From 20e92f4ae95387637e5158c80090d1bbde8e455b Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Tue, 7 Jun 2022 12:26:43 -0500 Subject: [PATCH] Adding Catalog3 file from discovery run 6/6/22 * Work dir: /home/mwyczalk_test/Projects/Catalog3/discovery/13.CPTAC3-20220606 --- Catalog3/CPTAC3.Catalog3.tsv | 23154 ++++++++++++++++++--------------- 1 file changed, 12856 insertions(+), 10298 deletions(-) diff --git a/Catalog3/CPTAC3.Catalog3.tsv b/Catalog3/CPTAC3.Catalog3.tsv index 06a0b5b..17a0094 100644 --- a/Catalog3/CPTAC3.Catalog3.tsv +++ b/Catalog3/CPTAC3.Catalog3.tsv @@ -5,8 +5,8 @@ dataset_name case disease experimental_strategy sample_type specimen_name filena 11LU013.miRNA-Seq.T.hg38 11LU013 LUAD miRNA-Seq tumor CPT0053040007 c99f30c5-cdd0-47b7-be22-b271c6c02124_mirnaseq_gdc_realn.bam 219234487 BAM harmonized CPTAC3 5cfe8c2c-6be5-4091-8997-3e0faf62ed83 4771396f8ed6db49384bbff636cc42d1 { 'aliquot_tag': 'ALQ_a2b7857', 'gdc_sample_type': 'Primary Tumor' } 11LU013.RNA-Seq.chimeric.T.hg38 11LU013 LUAD RNA-Seq tumor CPT0053040007 e50a994e-ffc1-4059-b103-34c6aa5a6c67.rna_seq.chimeric.gdc_realn.bam 254406270 BAM chimeric harmonized CPTAC3 55246224-11c0-415d-bd2f-06fd7cb53a16 f8a8550f7963d18257fdb8f5794976e7 { 'aliquot_tag': 'ALQ_a2b7857', 'gdc_sample_type': 'Primary Tumor' } 11LU013.RNA-Seq.genomic.T.hg38 11LU013 LUAD RNA-Seq tumor CPT0053040007 e50a994e-ffc1-4059-b103-34c6aa5a6c67.rna_seq.genomic.gdc_realn.bam 8729271900 BAM genomic harmonized CPTAC3 f4b41880-7801-486f-add7-651abe8201fb e931fc8cda5a76149e1649e7dbd57915 { 'aliquot_tag': 'ALQ_a2b7857', 'gdc_sample_type': 'Primary Tumor' } -11LU013.RNA-Seq.R1_L005.T 11LU013 LUAD RNA-Seq tumor CPT0053040007 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTTGA_S20_L005_R1_001.fastq.gz 4303659823 FASTQ R1_L005 unaligned CPTAC3 c01167e5-f61b-4816-8910-97d5f225122d 02f9a9654c38233f5db3e233042b4a9a { 'aliquot_tag': 'ALQ_a2b7857', 'gdc_sample_type': 'Primary Tumor' } -11LU013.RNA-Seq.R2_L005.T 11LU013 LUAD RNA-Seq tumor CPT0053040007 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTTGA_S20_L005_R2_001.fastq.gz 4658332238 FASTQ R2_L005 unaligned CPTAC3 94a49466-5947-4dce-b1cb-616d50b84046 2a1ce1585265097c8591930b4431ec8f { 'aliquot_tag': 'ALQ_a2b7857', 'gdc_sample_type': 'Primary Tumor' } +11LU013.RNA-Seq.R1_L005.T 11LU013 LUAD RNA-Seq tumor CPT0053040007 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTTGA_S20_L005_R1_001.fastq.gz 4303659823 FASTQ R1_L005 unaligned CPTAC3 c01167e5-f61b-4816-8910-97d5f225122d 02f9a9654c38233f5db3e233042b4a9a { 'aliquot_tag': 'ALQ_a2b7857', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +11LU013.RNA-Seq.R2_L005.T 11LU013 LUAD RNA-Seq tumor CPT0053040007 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTTGA_S20_L005_R2_001.fastq.gz 4658332238 FASTQ R2_L005 unaligned CPTAC3 94a49466-5947-4dce-b1cb-616d50b84046 2a1ce1585265097c8591930b4431ec8f { 'aliquot_tag': 'ALQ_a2b7857', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } 11LU013.RNA-Seq.transcriptome.T.hg38 11LU013 LUAD RNA-Seq tumor CPT0053040007 e50a994e-ffc1-4059-b103-34c6aa5a6c67.rna_seq.transcriptome.gdc_realn.bam 11774516982 BAM transcriptome harmonized CPTAC3 273e17dd-68b8-4930-8946-52b721114171 0c90eff0db42aa32269980d45822ba0a { 'aliquot_tag': 'ALQ_a2b7857', 'gdc_sample_type': 'Primary Tumor' } 11LU013.WGS.N 11LU013 LUAD WGS blood_normal CPT0040210002 CPT0040210002.WholeGenome.RP-1303.bam 63400815626 BAM aligned CPTAC3 44a17830-c27e-4c78-8754-0c0aa33ac33a 9f0120b2113fd9041bca569fe2462a87 { 'aliquot_tag': 'ALQ_22bb8a0', 'gdc_sample_type': 'Blood Derived Normal' } 11LU013.WGS.N.hg38 11LU013 LUAD WGS blood_normal CPT0040210002 e04e7004-0cc8-42d0-9276-a290b24940ce_gdc_realn.bam 96565337883 BAM harmonized CPTAC3 89783e46-3269-42ad-8b4a-6b3de3fd47dc e71dbb924769e7145f4c80760b953d05 { 'aliquot_tag': 'ALQ_22bb8a0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -21,9 +21,9 @@ dataset_name case disease experimental_strategy sample_type specimen_name filena 11LU016.miRNA-Seq.T 11LU016 LUAD miRNA-Seq tumor CPT0052940014 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L006_R1_001.unaln.bam 243245867 BAM unaligned CPTAC3 d06b0f25-a5c1-4619-ada7-0e0ce91dc057 cf1f077583b09baa2ddf3a7f16ca3666 { 'aliquot_tag': 'ALQ_b4142d0', 'gdc_sample_type': 'Primary Tumor' } 11LU016.miRNA-Seq.T.hg38 11LU016 LUAD miRNA-Seq tumor CPT0052940014 fafce980-56e2-410d-b7ba-90dc0cba86d8_mirnaseq_gdc_realn.bam 266210538 BAM harmonized CPTAC3 ec8e6421-9f91-4a0b-a7cc-48ab55014c77 35898fe85e397f065fad089be49762e3 { 'aliquot_tag': 'ALQ_b4142d0', 'gdc_sample_type': 'Primary Tumor' } 11LU016.RNA-Seq.chimeric.T.hg38 11LU016 LUAD RNA-Seq tumor CPT0052940014 17488f1e-ff21-486e-bc32-5aa1379672ae.rna_seq.chimeric.gdc_realn.bam 59702054 BAM chimeric harmonized CPTAC3 d77e1d7a-c044-4132-aff0-bc40609cc581 7df7eb745b8ce3b7936ff553f0c7999f { 'aliquot_tag': 'ALQ_b4142d0', 'gdc_sample_type': 'Primary Tumor' } -11LU016.RNA-Seq.genomic.T.hg38 11LU016 LUAD RNA-Seq tumor CPT0052940014 17488f1e-ff21-486e-bc32-5aa1379672ae.rna_seq.genomic.gdc_realn.bam 9227315114 BAM genomic harmonized CPTAC3 9a8354b8-45f7-471b-a1f9-ee14f21f4d20 69d3a869a930406f4d08e8d374c26c57 { 'aliquot_tag': 'ALQ_b4142d0', 'gdc_sample_type': 'Primary Tumor' } -11LU016.RNA-Seq.R1_L006.T 11LU016 LUAD RNA-Seq tumor CPT0052940014 170908_UNC31-K00269_0080_BHLJ52BBXX_ATGTCA_S21_L006_R1_001.fastq.gz 4031595548 FASTQ R1_L006 unaligned CPTAC3 4c8f74a2-3b16-46cc-b859-a9ecf7b9a621 3b423efa3ffcfc25a5dfc57525867af6 { 'aliquot_tag': 'ALQ_b4142d0', 'gdc_sample_type': 'Primary Tumor' } -11LU016.RNA-Seq.R2_L006.T 11LU016 LUAD RNA-Seq tumor CPT0052940014 170908_UNC31-K00269_0080_BHLJ52BBXX_ATGTCA_S21_L006_R2_001.fastq.gz 4399145149 FASTQ R2_L006 unaligned CPTAC3 7dbc18b1-12d7-4ba2-a87a-45c1e24d1e87 d52c47587cceea6adaf26d20ffdde53d { 'aliquot_tag': 'ALQ_b4142d0', 'gdc_sample_type': 'Primary Tumor' } +11LU016.RNA-Seq.genomic.T.hg38 11LU016 LUAD RNA-Seq tumor CPT0052940014 17488f1e-ff21-486e-bc32-5aa1379672ae.rna_seq.genomic.gdc_realn.bam 9227315114 BAM genomic harmonized CPTAC3 6eee333f-eb7f-41a9-96e2-e090b6ad2a9c 69d3a869a930406f4d08e8d374c26c57 { 'aliquot_tag': 'ALQ_b4142d0', 'gdc_sample_type': 'Primary Tumor' } +11LU016.RNA-Seq.R1_L006.T 11LU016 LUAD RNA-Seq tumor CPT0052940014 170908_UNC31-K00269_0080_BHLJ52BBXX_ATGTCA_S21_L006_R1_001.fastq.gz 4031595548 FASTQ R1_L006 unaligned CPTAC3 4c8f74a2-3b16-46cc-b859-a9ecf7b9a621 3b423efa3ffcfc25a5dfc57525867af6 { 'aliquot_tag': 'ALQ_b4142d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +11LU016.RNA-Seq.R2_L006.T 11LU016 LUAD RNA-Seq tumor CPT0052940014 170908_UNC31-K00269_0080_BHLJ52BBXX_ATGTCA_S21_L006_R2_001.fastq.gz 4399145149 FASTQ R2_L006 unaligned CPTAC3 7dbc18b1-12d7-4ba2-a87a-45c1e24d1e87 d52c47587cceea6adaf26d20ffdde53d { 'aliquot_tag': 'ALQ_b4142d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } 11LU016.RNA-Seq.transcriptome.T.hg38 11LU016 LUAD RNA-Seq tumor CPT0052940014 17488f1e-ff21-486e-bc32-5aa1379672ae.rna_seq.transcriptome.gdc_realn.bam 10083402963 BAM transcriptome harmonized CPTAC3 9b37937d-4cf6-456b-9f8c-010a4862304a e62715c19874557102307db1c18e7c9b { 'aliquot_tag': 'ALQ_b4142d0', 'gdc_sample_type': 'Primary Tumor' } 11LU016.WGS.N 11LU016 LUAD WGS blood_normal CPT0037120002 CPT0037120002.WholeGenome.RP-1303.bam 65076536281 BAM aligned CPTAC3 aefcda0c-0224-4091-a489-f65fd1bb84a7 09b64fbeb7288371e7a90e1f590997f7 { 'aliquot_tag': 'ALQ_c7d8749', 'gdc_sample_type': 'Blood Derived Normal' } 11LU016.WGS.N.hg38 11LU016 LUAD WGS blood_normal CPT0037120002 b200ba63-b414-4169-8712-eb726c784613_gdc_realn.bam 96485032091 BAM harmonized CPTAC3 e7d08220-93aa-4182-a19f-6ea9267b6ce8 35bd20a9b59b84b78df97b776d71ec69 { 'aliquot_tag': 'ALQ_c7d8749', 'gdc_sample_type': 'Blood Derived Normal' } @@ -38,9 +38,9 @@ dataset_name case disease experimental_strategy sample_type specimen_name filena 11LU022.miRNA-Seq.T 11LU022 LUAD miRNA-Seq tumor CPT0052170014 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L006_R1_001.unaln.bam 275659119 BAM unaligned CPTAC3 396f9bae-72c6-445d-89fb-332a9b023628 458e971e86f11d9ed56a95ec04ff85b5 { 'aliquot_tag': 'ALQ_a0b2ba6d', 'gdc_sample_type': 'Primary Tumor' } 11LU022.miRNA-Seq.T.hg38 11LU022 LUAD miRNA-Seq tumor CPT0052170014 aba40a2f-6d06-4f27-88e5-132f94e4b169_mirnaseq_gdc_realn.bam 299307293 BAM harmonized CPTAC3 0a7d4109-2998-480d-8f40-10d3093d63ee dc3709c42057ccc566d941ba49c677d0 { 'aliquot_tag': 'ALQ_a0b2ba6d', 'gdc_sample_type': 'Primary Tumor' } 11LU022.RNA-Seq.chimeric.T.hg38 11LU022 LUAD RNA-Seq tumor CPT0052170014 cfc4c1bf-3dc2-495a-bb51-ad49c4137a21.rna_seq.chimeric.gdc_realn.bam 46108124 BAM chimeric harmonized CPTAC3 10c840ad-128a-4902-9b06-506ac4d77b25 fb9dc71e6dd6d2d68c7f51165533216e { 'aliquot_tag': 'ALQ_a0b2ba6d', 'gdc_sample_type': 'Primary Tumor' } -11LU022.RNA-Seq.genomic.T.hg38 11LU022 LUAD RNA-Seq tumor CPT0052170014 cfc4c1bf-3dc2-495a-bb51-ad49c4137a21.rna_seq.genomic.gdc_realn.bam 9052031834 BAM genomic harmonized CPTAC3 4fa74a58-832a-4504-983f-9eaff8079878 93d0ebe91f162ca62f547779990e16ee { 'aliquot_tag': 'ALQ_a0b2ba6d', 'gdc_sample_type': 'Primary Tumor' } -11LU022.RNA-Seq.R1_L006.T 11LU022 LUAD RNA-Seq tumor CPT0052170014 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 4126753330 FASTQ R1_L006 unaligned CPTAC3 34d25352-c90a-4cf6-b61a-5d2f4666fa52 9971f48e1eef7d42debe3d1e7e54b095 { 'aliquot_tag': 'ALQ_a0b2ba6d', 'gdc_sample_type': 'Primary Tumor' } -11LU022.RNA-Seq.R2_L006.T 11LU022 LUAD RNA-Seq tumor CPT0052170014 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 4493136826 FASTQ R2_L006 unaligned CPTAC3 f0b0ceaf-55a7-4f73-839b-f9ff940eefdc d3b1e90b40bb3a647be0e9bb49002fba { 'aliquot_tag': 'ALQ_a0b2ba6d', 'gdc_sample_type': 'Primary Tumor' } +11LU022.RNA-Seq.genomic.T.hg38 11LU022 LUAD RNA-Seq tumor CPT0052170014 cfc4c1bf-3dc2-495a-bb51-ad49c4137a21.rna_seq.genomic.gdc_realn.bam 9052031834 BAM genomic harmonized CPTAC3 0af6d9c6-c205-4b2f-9fd2-949dcd9e9f77 93d0ebe91f162ca62f547779990e16ee { 'aliquot_tag': 'ALQ_a0b2ba6d', 'gdc_sample_type': 'Primary Tumor' } +11LU022.RNA-Seq.R1_L006.T 11LU022 LUAD RNA-Seq tumor CPT0052170014 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 4126753330 FASTQ R1_L006 unaligned CPTAC3 34d25352-c90a-4cf6-b61a-5d2f4666fa52 9971f48e1eef7d42debe3d1e7e54b095 { 'aliquot_tag': 'ALQ_a0b2ba6d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +11LU022.RNA-Seq.R2_L006.T 11LU022 LUAD RNA-Seq tumor CPT0052170014 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 4493136826 FASTQ R2_L006 unaligned CPTAC3 f0b0ceaf-55a7-4f73-839b-f9ff940eefdc d3b1e90b40bb3a647be0e9bb49002fba { 'aliquot_tag': 'ALQ_a0b2ba6d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } 11LU022.RNA-Seq.transcriptome.T.hg38 11LU022 LUAD RNA-Seq tumor CPT0052170014 cfc4c1bf-3dc2-495a-bb51-ad49c4137a21.rna_seq.transcriptome.gdc_realn.bam 10587229256 BAM transcriptome harmonized CPTAC3 8677e614-683a-41e8-8486-aea5896632b9 9871b60a3869ba0c8c411b1913d1a0b9 { 'aliquot_tag': 'ALQ_a0b2ba6d', 'gdc_sample_type': 'Primary Tumor' } 11LU022.WGS.N 11LU022 LUAD WGS blood_normal CPT0038140002 CPT0038140002.WholeGenome.RP-1303.bam 63381145020 BAM aligned CPTAC3 368aff0a-d15f-49bd-b9d1-bb8583f037e7 76532fc386663ff7cc02ee8eeb196ac0 { 'aliquot_tag': 'ALQ_75750200', 'gdc_sample_type': 'Blood Derived Normal' } 11LU022.WGS.N.hg38 11LU022 LUAD WGS blood_normal CPT0038140002 db4e039f-71a5-4b7b-814c-bcf90189c650_gdc_realn.bam 95326322818 BAM harmonized CPTAC3 43393979-50c9-44e3-b75c-6792b1a20300 f7fd1ed4e5527727e41947713516a6eb { 'aliquot_tag': 'ALQ_75750200', 'gdc_sample_type': 'Blood Derived Normal' } @@ -51,14 +51,15 @@ dataset_name case disease experimental_strategy sample_type specimen_name filena 11LU022.WXS.T 11LU022 LUAD WXS tumor CPT0052170010 CPT0052170010.WholeExome.RP-1303.bam 28330934233 BAM aligned CPTAC3 c16296d2-2905-4ffd-a2ae-78e633da41b8 7705d783ff3553286142e89c33f813f3 { 'aliquot_tag': 'ALQ_a7df7e74', 'gdc_sample_type': 'Primary Tumor' } 11LU022.WXS.T.hg38 11LU022 LUAD WXS tumor CPT0052170010 1c70d264-927f-4bb7-b896-3c68c0ba3fa7_gdc_realn.bam 38175893642 BAM harmonized CPTAC3 8466e786-5981-421d-ab9a-a6553c5c8285 2e1c2e90519444ded5273a5a969a8407 { 'aliquot_tag': 'ALQ_a7df7e74', 'gdc_sample_type': 'Primary Tumor' } 11LU035.DUP_2bb40b73.WGS.T 11LU035 LUAD WGS tumor CPT0051690010_2 CPT0051690010_2.WholeGenome.RP-2158.bam 107449354085 BAM aligned CPTAC3 c3048554-b61b-44a3-9181-617a9739d7a5 a5f11fc3bddd1bf1dc6fe3c4e526931d { 'aliquot_tag': 'DUP_2bb40b73', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters' } +11LU035.DUP_2bb40b73.WGS.T.hg38 11LU035 LUAD WGS tumor CPT0051690010_2 110eb74d-e6e2-476a-9ffc-cec129158e93_wgs_gdc_realn.bam 326718766704 BAM harmonized CPTAC3 2407f091-fd44-42a0-bf38-9440d9767b41 8d13b616ef49d9c85c77cc73d7388424 { 'aliquot_tag': 'DUP_2bb40b73', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters' } 11LU035.MethArray.Green.T 11LU035 LUAD Methylation Array tumor CPT0051690010 202178770083_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 25cc7309-ee8a-48d8-8fbb-70cd964f6a1d 522d9ff949793e9570ffc3ce07f0297b { 'aliquot_tag': 'ALQ_3402ea30', 'gdc_sample_type': 'Primary Tumor' } 11LU035.MethArray.Red.T 11LU035 LUAD Methylation Array tumor CPT0051690010 202178770083_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 6b3c3944-68ae-40fd-b2ba-fdd81987c209 89a9dd12542058b29e141aee46a28f1c { 'aliquot_tag': 'ALQ_3402ea30', 'gdc_sample_type': 'Primary Tumor' } 11LU035.miRNA-Seq.T 11LU035 LUAD miRNA-Seq tumor CPT0051690007 181012_UNC32-K00270_0124_AH223CBBXY_ACTTGA_S29_L007_R1_001.unaln.bam 205078054 BAM unaligned CPTAC3 cc308aa7-1870-40e8-bb76-17dc251cae90 ddb4ac28d86cb306dfa20ad9dd6ee61d { 'aliquot_tag': 'ALQ_b37d4ed2', 'gdc_sample_type': 'Primary Tumor' } 11LU035.miRNA-Seq.T.hg38 11LU035 LUAD miRNA-Seq tumor CPT0051690007 834f8510-5890-4124-912e-192ee6bb31ea_mirnaseq_gdc_realn.bam 228321743 BAM harmonized CPTAC3 638ed836-c7f7-4610-9e1f-d4ee8311cb41 526a56bc331a315c14cab88dbbe3eba6 { 'aliquot_tag': 'ALQ_b37d4ed2', 'gdc_sample_type': 'Primary Tumor' } 11LU035.RNA-Seq.chimeric.T.hg38 11LU035 LUAD RNA-Seq tumor CPT0051690007 dba7da5c-6c63-4ba6-a485-fd3259a35a2b.rna_seq.chimeric.gdc_realn.bam 314558536 BAM chimeric harmonized CPTAC3 83fbf7d4-dc37-478f-b0b4-e6d42bbc6446 a034e575ea3a0699b6b378793772f185 { 'aliquot_tag': 'ALQ_b37d4ed2', 'gdc_sample_type': 'Primary Tumor' } 11LU035.RNA-Seq.genomic.T.hg38 11LU035 LUAD RNA-Seq tumor CPT0051690007 dba7da5c-6c63-4ba6-a485-fd3259a35a2b.rna_seq.genomic.gdc_realn.bam 6826942393 BAM genomic harmonized CPTAC3 581198f7-a5bb-48a1-8d3b-9178e2acc76e cb2e443afe10b015ca2edb3b5828bc8f { 'aliquot_tag': 'ALQ_b37d4ed2', 'gdc_sample_type': 'Primary Tumor' } -11LU035.RNA-Seq.R1_L006.T 11LU035 LUAD RNA-Seq tumor CPT0051690007 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L006_R1_001.fastq.gz 3301808869 FASTQ R1_L006 unaligned CPTAC3 a4928a2b-40a7-4b3b-9215-6c18d7837f81 d6293df171e9d5fa20250fd11ebd3ce6 { 'aliquot_tag': 'ALQ_b37d4ed2', 'gdc_sample_type': 'Primary Tumor' } -11LU035.RNA-Seq.R2_L006.T 11LU035 LUAD RNA-Seq tumor CPT0051690007 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L006_R2_001.fastq.gz 3590554117 FASTQ R2_L006 unaligned CPTAC3 927e1a09-f4ff-462b-a771-23f82da02ac1 c90ea00f8e66514d41f005e20adf1de5 { 'aliquot_tag': 'ALQ_b37d4ed2', 'gdc_sample_type': 'Primary Tumor' } +11LU035.RNA-Seq.R1_L006.T 11LU035 LUAD RNA-Seq tumor CPT0051690007 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L006_R1_001.fastq.gz 3301808869 FASTQ R1_L006 unaligned CPTAC3 a4928a2b-40a7-4b3b-9215-6c18d7837f81 d6293df171e9d5fa20250fd11ebd3ce6 { 'aliquot_tag': 'ALQ_b37d4ed2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +11LU035.RNA-Seq.R2_L006.T 11LU035 LUAD RNA-Seq tumor CPT0051690007 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L006_R2_001.fastq.gz 3590554117 FASTQ R2_L006 unaligned CPTAC3 927e1a09-f4ff-462b-a771-23f82da02ac1 c90ea00f8e66514d41f005e20adf1de5 { 'aliquot_tag': 'ALQ_b37d4ed2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } 11LU035.RNA-Seq.transcriptome.T.hg38 11LU035 LUAD RNA-Seq tumor CPT0051690007 dba7da5c-6c63-4ba6-a485-fd3259a35a2b.rna_seq.transcriptome.gdc_realn.bam 9284220107 BAM transcriptome harmonized CPTAC3 426ec756-7bc8-4167-8024-ddd61fc3af03 411c36fe376e951d98e0ecfd33f1cfd0 { 'aliquot_tag': 'ALQ_b37d4ed2', 'gdc_sample_type': 'Primary Tumor' } 11LU035.WGS.N 11LU035 LUAD WGS blood_normal CPT0034540002 CPT0034540002.WholeGenome.RP-1303.bam 63978250331 BAM aligned CPTAC3 09e8a72a-fa82-407e-b236-d3b502d695b6 1aa49f631002f8912a2a6f9988ecb0a0 { 'aliquot_tag': 'ALQ_29442a62', 'gdc_sample_type': 'Blood Derived Normal' } 11LU035.WGS.N.hg38 11LU035 LUAD WGS blood_normal CPT0034540002 b1e06458-62ca-4c7d-8c9b-09e24185678d_gdc_realn.bam 97616909143 BAM harmonized CPTAC3 051bf441-b940-4e4b-95a9-86f8f892090c 32790a3f4a9a5734fa765782c4bc1a42 { 'aliquot_tag': 'ALQ_29442a62', 'gdc_sample_type': 'Blood Derived Normal' } @@ -71,443 +72,835 @@ dataset_name case disease experimental_strategy sample_type specimen_name filena C1230738.DUP_eb44394c.MethArray.Green.T C1230738 GBM Methylation Array tumor 7316UP-2837 205707890073_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6a93a1a5-d1e4-44fd-911f-e0ec24aba2f7 f285f94bd015d1bca9869e6bce52c1d9 { 'aliquot_tag': 'DUP_eb44394c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C1230738.DUP_eb44394c.MethArray.Red.T C1230738 GBM Methylation Array tumor 7316UP-2837 205707890073_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 ac35ebec-0748-4db0-a74d-1fecfae94bef b7ac056caac1e124cd2cad3e10c1e398 { 'aliquot_tag': 'DUP_eb44394c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C1230738.DUP_eb44394c.WGS.T C1230738 GBM WGS tumor 7316UP-2837 7316UP-2837.WholeGenome.RP-2158.bam 69746897192 BAM aligned CPTAC3 f35a206c-e451-4218-9c40-07dd239012b8 aac0b7f9c5c1cdc413ff818d5f79cfe3 { 'aliquot_tag': 'DUP_eb44394c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C1230738.DUP_eb44394c.WGS.T.hg38 C1230738 GBM WGS tumor 7316UP-2837 062a4cb7-1a73-4382-9f16-fdd891218a97_wgs_gdc_realn.bam 201008105730 BAM harmonized CPTAC3 49344d55-2c3a-412b-910b-1faebfcea48d 5dc96a48b2b4f9f17fa5fc7b1e4560f5 { 'aliquot_tag': 'DUP_eb44394c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C1230738.DUP_eb44394c.WXS.T C1230738 GBM WXS tumor 7316UP-2837 7316UP-2837.WholeExome.RP-1303.bam 25636693051 BAM aligned CPTAC3 f1e8f2ec-063c-4de6-9ed2-86f00ad6d39e 7634a3d954df41c984b2399f460868bf { 'aliquot_tag': 'DUP_eb44394c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C1230738.DUP_eb44394c.WXS.T.hg38 C1230738 GBM WXS tumor 7316UP-2837 062a4cb7-1a73-4382-9f16-fdd891218a97_wxs_gdc_realn.bam 34561898412 BAM harmonized CPTAC3 f6c72dde-4426-4a98-9716-e4490b425df3 78f96737a8281fb8640fc18810963790 { 'aliquot_tag': 'DUP_eb44394c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C1230738.DUP_fe862ae6.MethArray.Green.R C1230738 GBM Methylation Array recurrent_tumor 7316UP-3741 205705520083_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 c0969500-6f4e-4238-828a-79c4f1479b75 152fe8be73d3340d64c202ae82754c7b { 'aliquot_tag': 'DUP_fe862ae6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C1230738.DUP_fe862ae6.MethArray.Red.R C1230738 GBM Methylation Array recurrent_tumor 7316UP-3741 205705520083_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 bf3e1d3e-5796-47b1-866e-741021885bf1 08b96ccca58779e6d203477cd04704f1 { 'aliquot_tag': 'DUP_fe862ae6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C1230738.DUP_fe862ae6.WGS.R C1230738 GBM WGS recurrent_tumor 7316UP-3741 7316UP-3741.WholeGenome.RP-2158.bam 50417576165 BAM aligned CPTAC3 dd3fd775-330c-43c8-bfbc-5e0ab6dff59a b2adb45bf2f29c1d498bf730f5db9950 { 'aliquot_tag': 'DUP_fe862ae6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C1230738.DUP_fe862ae6.WGS.R.hg38 C1230738 GBM WGS recurrent_tumor 7316UP-3741 b8ffd3e5-14a9-4f6e-b750-9de2206ac247_wgs_gdc_realn.bam 152793323610 BAM harmonized CPTAC3 2bcaca05-b511-49e8-ac08-b3496d3823f6 5112b6db93081efce8bdf4be1e53cd47 { 'aliquot_tag': 'DUP_fe862ae6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C1230738.DUP_fe862ae6.WXS.R C1230738 GBM WXS recurrent_tumor 7316UP-3741 7316UP-3741.WholeExome.RP-1303.bam 28694893121 BAM aligned CPTAC3 1d9c4ae4-85b5-4f7c-96d9-b0cf9ac46c84 508547b0d43977b0b8899528ce7c5155 { 'aliquot_tag': 'DUP_fe862ae6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C1230738.DUP_fe862ae6.WXS.R.hg38 C1230738 GBM WXS recurrent_tumor 7316UP-3741 b8ffd3e5-14a9-4f6e-b750-9de2206ac247_wxs_gdc_realn.bam 38762633340 BAM harmonized CPTAC3 12adff22-d44c-42eb-bbfc-717e1e007fdc 5801c76b4fe444be84096b8c37a4fd19 { 'aliquot_tag': 'DUP_fe862ae6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C1230738.miRNA-Seq.R C1230738 GBM miRNA-Seq recurrent_tumor 7316UP-3741-1104759 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGGCC_S20_L001_R1_001.unaln.bam 148674938 BAM unaligned CPTAC3 75b31b5b-5e92-4c02-b477-2a372ee0ace1 44d6d72feeb2b3f78c77eec3c2fc474f { 'aliquot_tag': 'ALQ_d584ef16', 'gdc_sample_type': 'Recurrent Tumor' } +C1230738.miRNA-Seq.R.hg38 C1230738 GBM miRNA-Seq recurrent_tumor 7316UP-3741-1104759 ca58d064-dbe4-4aff-aab1-a9e088d0b437_mirnaseq_gdc_realn.bam 170341951 BAM harmonized CPTAC3 43127eb1-0cb9-490e-b41a-be211f9f2c14 845f3a27a60b7695db365340b8e105ef { 'aliquot_tag': 'ALQ_d584ef16', 'gdc_sample_type': 'Recurrent Tumor' } C1230738.miRNA-Seq.T C1230738 GBM miRNA-Seq tumor 7316UP-2837-1104818 210817_UNC31-K00269_0302_AHLCTHBBXY_CACGAT_S6_L003_R1_001.unaln.bam 343545469 BAM unaligned CPTAC3 36541208-7a9e-4320-bc15-c46bb9f0f472 e6a1251e8ab524a477e467c69f86b31b { 'aliquot_tag': 'ALQ_542887e3', 'gdc_sample_type': 'Primary Tumor' } -C1230738.RNA-Seq.R1_L004.R C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R1_001.fastq.gz 3719032466 FASTQ R1_L004 unaligned CPTAC3 a0573c53-73bc-4841-8fb6-e5ae0bf87740 d4af0cbb6491f7ca2f9d04d7eae96f00 { 'aliquot_tag': 'ALQ_d584ef16', 'gdc_sample_type': 'Recurrent Tumor' } -C1230738.RNA-Seq.R1_L006.T C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R1_001.fastq.gz 3446087771 FASTQ R1_L006 unaligned CPTAC3 bcedfbaa-90dd-4081-8704-a1cb34ec9275 232051111d19440ee5851807edaf351c { 'aliquot_tag': 'ALQ_542887e3', 'gdc_sample_type': 'Primary Tumor' } -C1230738.RNA-Seq.R2_L004.R C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R2_001.fastq.gz 4079189731 FASTQ R2_L004 unaligned CPTAC3 eb68c408-9b99-4474-a4aa-8e8282e65874 145c7446121fca6bc55785db95e22245 { 'aliquot_tag': 'ALQ_d584ef16', 'gdc_sample_type': 'Recurrent Tumor' } -C1230738.RNA-Seq.R2_L006.T C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R2_001.fastq.gz 3752803777 FASTQ R2_L006 unaligned CPTAC3 455058a8-b378-4ffa-9f8f-0726862855e4 b562d3358ba8bb38d56a2002bd651b26 { 'aliquot_tag': 'ALQ_542887e3', 'gdc_sample_type': 'Primary Tumor' } +C1230738.miRNA-Seq.T.hg38 C1230738 GBM miRNA-Seq tumor 7316UP-2837-1104818 d5e99f68-1f9f-4206-83cf-d3d07f211362_mirnaseq_gdc_realn.bam 391240415 BAM harmonized CPTAC3 a06b121d-b515-4282-a75b-2928ebf75b52 69317c5d14c14e7b99ef1b657c87b8ca { 'aliquot_tag': 'ALQ_542887e3', 'gdc_sample_type': 'Primary Tumor' } +C1230738.RNA-Seq.chimeric.R.hg38 C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 58b46c1f-1c42-4329-a011-532c631ffbfd.rna_seq.chimeric.gdc_realn.bam 95280051 BAM chimeric harmonized CPTAC3 2ae2966e-3642-4051-a775-6bb81f8aca1c d46625616304afc319565c88ef68a372 { 'aliquot_tag': 'ALQ_d584ef16', 'gdc_sample_type': 'Recurrent Tumor' } +C1230738.RNA-Seq.chimeric.T.hg38 C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 2db02604-00dd-4978-b6cc-72cd94021cda.rna_seq.chimeric.gdc_realn.bam 71224577 BAM chimeric harmonized CPTAC3 d259f7fe-98e4-4650-9f9b-084a3335a069 90fb1b0cd29b0ddfb6342f71921660f4 { 'aliquot_tag': 'ALQ_542887e3', 'gdc_sample_type': 'Primary Tumor' } +C1230738.RNA-Seq.genomic.R.hg38 C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 58b46c1f-1c42-4329-a011-532c631ffbfd.rna_seq.genomic.gdc_realn.bam 7653991217 BAM genomic harmonized CPTAC3 9d98c7a5-8279-40d9-9eb2-180fbe9a1393 2043e52c870ba6df76b366db67e8dd29 { 'aliquot_tag': 'ALQ_d584ef16', 'gdc_sample_type': 'Recurrent Tumor' } +C1230738.RNA-Seq.genomic.T.hg38 C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 2db02604-00dd-4978-b6cc-72cd94021cda.rna_seq.genomic.gdc_realn.bam 7822256033 BAM genomic harmonized CPTAC3 5b01e091-a339-4f18-b246-8998deb25060 2a1cbcf816b58b7450790b8eee2f1143 { 'aliquot_tag': 'ALQ_542887e3', 'gdc_sample_type': 'Primary Tumor' } +C1230738.RNA-Seq.R1_L004.R C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R1_001.fastq.gz 3719032466 FASTQ R1_L004 unaligned CPTAC3 a0573c53-73bc-4841-8fb6-e5ae0bf87740 d4af0cbb6491f7ca2f9d04d7eae96f00 { 'aliquot_tag': 'ALQ_d584ef16', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L004' } +C1230738.RNA-Seq.R1_L006.T C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R1_001.fastq.gz 3446087771 FASTQ R1_L006 unaligned CPTAC3 bcedfbaa-90dd-4081-8704-a1cb34ec9275 232051111d19440ee5851807edaf351c { 'aliquot_tag': 'ALQ_542887e3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C1230738.RNA-Seq.R2_L004.R C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 210713_UNC32-K00270_0291_AHLK5VBBXY_CGGCGTGA-GCGCCTGT_S14_L004_R2_001.fastq.gz 4079189731 FASTQ R2_L004 unaligned CPTAC3 eb68c408-9b99-4474-a4aa-8e8282e65874 145c7446121fca6bc55785db95e22245 { 'aliquot_tag': 'ALQ_d584ef16', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L004' } +C1230738.RNA-Seq.R2_L006.T C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 210811_UNC31-K00269_0301_AHLLC5BBXY_CCATTCGA-GTTGTCCG_S21_L006_R2_001.fastq.gz 3752803777 FASTQ R2_L006 unaligned CPTAC3 455058a8-b378-4ffa-9f8f-0726862855e4 b562d3358ba8bb38d56a2002bd651b26 { 'aliquot_tag': 'ALQ_542887e3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C1230738.RNA-Seq.transcriptome.R.hg38 C1230738 GBM RNA-Seq recurrent_tumor 7316UP-3741-1104759 58b46c1f-1c42-4329-a011-532c631ffbfd.rna_seq.transcriptome.gdc_realn.bam 13606920308 BAM transcriptome harmonized CPTAC3 194a9653-8758-4751-9efc-c6b3c36d412a ac98c00524ac9a8732c9dc1f7155e0b4 { 'aliquot_tag': 'ALQ_d584ef16', 'gdc_sample_type': 'Recurrent Tumor' } +C1230738.RNA-Seq.transcriptome.T.hg38 C1230738 GBM RNA-Seq tumor 7316UP-2837-1104818 2db02604-00dd-4978-b6cc-72cd94021cda.rna_seq.transcriptome.gdc_realn.bam 11279278020 BAM transcriptome harmonized CPTAC3 ca011220-cb7d-4464-8263-53450eb3f42f 4a3f94d5f5123ab9e1f143b96c6a2699 { 'aliquot_tag': 'ALQ_542887e3', 'gdc_sample_type': 'Primary Tumor' } C1230738.WGS.N C1230738 GBM WGS blood_normal 7316UP-2837-1105281 7316UP-2837-1105281.WholeGenome.RP-2158.bam 49814298292 BAM aligned CPTAC3 a9630601-73b3-4447-bcaf-0ef5d48a7afd 0623cc8c784793913037eae198a764e8 { 'aliquot_tag': 'ALQ_491d66bd', 'gdc_sample_type': 'Blood Derived Normal' } +C1230738.WGS.N.hg38 C1230738 GBM WGS blood_normal 7316UP-2837-1105281 50a02e53-a4d7-4e01-9505-1321cc9f0e32_wgs_gdc_realn.bam 145688610322 BAM harmonized CPTAC3 91fdb084-280b-4301-a2dd-9ebd845f862c e2087e6e30b5a27eb836770fa5f53611 { 'aliquot_tag': 'ALQ_491d66bd', 'gdc_sample_type': 'Blood Derived Normal' } C1230738.WGS.T C1230738 GBM WGS tumor 7316UP-2837-1105198 7316UP-2837-1105198.WholeGenome.RP-2158.bam 63902215677 BAM aligned CPTAC3 49dc59e8-8e4b-4ee7-8da5-c8741457b41b ccdc01fe3bae129c5221dea16cd37526 { 'aliquot_tag': 'ALQ_2b9c5101', 'gdc_sample_type': 'Primary Tumor' } +C1230738.WGS.T.hg38 C1230738 GBM WGS tumor 7316UP-2837-1105198 aee72b24-81c3-47b5-856d-35ff22208f84_wgs_gdc_realn.bam 187148349528 BAM harmonized CPTAC3 4f59cd18-e160-40bc-b20f-d9b6d6b2a828 0ee0bcfcdbf5558a7e7f940cd7d57fc8 { 'aliquot_tag': 'ALQ_2b9c5101', 'gdc_sample_type': 'Primary Tumor' } C1230738.WXS.N C1230738 GBM WXS blood_normal 7316UP-2837-1105281 7316UP-2837-1105281.WholeExome.RP-1303.bam 24752739546 BAM aligned CPTAC3 7c45e702-2e8c-4706-8e0a-f0c5a02d8883 6097b06f8e45394823438e12bf5abba6 { 'aliquot_tag': 'ALQ_491d66bd', 'gdc_sample_type': 'Blood Derived Normal' } +C1230738.WXS.N.hg38 C1230738 GBM WXS blood_normal 7316UP-2837-1105281 50a02e53-a4d7-4e01-9505-1321cc9f0e32_wxs_gdc_realn.bam 33591352572 BAM harmonized CPTAC3 55926090-7cd6-4cf3-b401-206767350691 2e85996c8fe1d3cd2479378893753e45 { 'aliquot_tag': 'ALQ_491d66bd', 'gdc_sample_type': 'Blood Derived Normal' } C1230738.WXS.T C1230738 GBM WXS tumor 7316UP-2837-1105198 7316UP-2837-1105198.WholeExome.RP-1303.bam 25663974485 BAM aligned CPTAC3 1dfde80e-ad35-4698-8708-833ed9db67b4 e93bb4dfc367431c05478c8e10a3ac2c { 'aliquot_tag': 'ALQ_2b9c5101', 'gdc_sample_type': 'Primary Tumor' } +C1230738.WXS.T.hg38 C1230738 GBM WXS tumor 7316UP-2837-1105198 aee72b24-81c3-47b5-856d-35ff22208f84_wxs_gdc_realn.bam 34971128893 BAM harmonized CPTAC3 b06c50fe-383f-4cce-a9b0-9f70f118d5e0 b68b3a59d8e6701a491f122a7771841a { 'aliquot_tag': 'ALQ_2b9c5101', 'gdc_sample_type': 'Primary Tumor' } C1245129.DUP_bede5e24.MethArray.Green.R C1245129 GBM Methylation Array recurrent_tumor 7316UP-3639 205854140168_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 729f75e3-173c-4573-a673-93b8ec3f9dd8 2d82e384b86dd99d081acae15155165d { 'aliquot_tag': 'DUP_bede5e24', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C1245129.DUP_bede5e24.MethArray.Red.R C1245129 GBM Methylation Array recurrent_tumor 7316UP-3639 205854140168_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 eef47373-b2a6-4bad-bafe-96fb3b8d1be2 c0decb4b2ff29ef67bfbcfd2f6b87860 { 'aliquot_tag': 'DUP_bede5e24', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C1245129.DUP_bede5e24.WGS.R C1245129 GBM WGS recurrent_tumor 7316UP-3639 7316UP-3639.WholeGenome.RP-2158.bam 54503635300 BAM aligned CPTAC3 bde92380-6a06-432a-8937-9558526363bd fcf78917dfc26a68ec0d369fd4ae64d3 { 'aliquot_tag': 'DUP_bede5e24', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C1245129.DUP_bede5e24.WGS.R.hg38 C1245129 GBM WGS recurrent_tumor 7316UP-3639 aae8553d-f3af-44ff-a229-af238c3646a9_wgs_gdc_realn.bam 163737938502 BAM harmonized CPTAC3 7ecdf616-2ad4-454c-bbac-5ebe26cfe88e 695ece41ede6417f77b7e37cb61c7d82 { 'aliquot_tag': 'DUP_bede5e24', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C1245129.DUP_bede5e24.WXS.R C1245129 GBM WXS recurrent_tumor 7316UP-3639 7316UP-3639.WholeExome.RP-1303.bam 33535885886 BAM aligned CPTAC3 67022a09-c8a0-42f2-8a24-975f86875723 e5d125c5c765b8003ae640b7bd930b11 { 'aliquot_tag': 'DUP_bede5e24', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C1245129.DUP_bede5e24.WXS.R.hg38 C1245129 GBM WXS recurrent_tumor 7316UP-3639 aae8553d-f3af-44ff-a229-af238c3646a9_wxs_gdc_realn.bam 45396231257 BAM harmonized CPTAC3 aaa8082f-1261-406c-a1a2-cee82991b186 fda1ed76057e788d18c3e3ca4920ddb6 { 'aliquot_tag': 'DUP_bede5e24', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C1245129.DUP_f4f0a623.MethArray.Green.T C1245129 GBM Methylation Array tumor 7316UP-2923 205705520055_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 29018c15-545a-40ad-a61a-afb48a872f13 cdc4611636222a5d3113d3a2cd0599fd { 'aliquot_tag': 'DUP_f4f0a623', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C1245129.DUP_f4f0a623.MethArray.Red.T C1245129 GBM Methylation Array tumor 7316UP-2923 205705520055_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 0e0d494c-fbb4-4174-9243-04f3da23d763 9cd8ef47603503a149d443bc8d61967c { 'aliquot_tag': 'DUP_f4f0a623', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C1245129.DUP_f4f0a623.WGS.T C1245129 GBM WGS tumor 7316UP-2923 7316UP-2923.WholeGenome.RP-2158.bam 68310898527 BAM aligned CPTAC3 9ea042b4-5220-487e-90c0-8b5fb62d514f a6c72432b14b5314b02d5c8c954c0d41 { 'aliquot_tag': 'DUP_f4f0a623', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C1245129.DUP_f4f0a623.WGS.T.hg38 C1245129 GBM WGS tumor 7316UP-2923 5b739159-0dff-476e-932e-8198cb3c76e4_wgs_gdc_realn.bam 207756327142 BAM harmonized CPTAC3 f3c78e93-c869-4b25-b43b-eb115a89b242 7c377d8a6d5704601e24c58d20e27558 { 'aliquot_tag': 'DUP_f4f0a623', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C1245129.DUP_f4f0a623.WXS.T C1245129 GBM WXS tumor 7316UP-2923 7316UP-2923.WholeExome.RP-1303.bam 27658601868 BAM aligned CPTAC3 758f7bab-339d-4faa-882d-9bde7a947266 04368db0063df5781c5c208155946f11 { 'aliquot_tag': 'DUP_f4f0a623', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C1245129.DUP_f4f0a623.WXS.T.hg38 C1245129 GBM WXS tumor 7316UP-2923 5b739159-0dff-476e-932e-8198cb3c76e4_wxs_gdc_realn.bam 37402084587 BAM harmonized CPTAC3 9e05a653-da61-49f4-b2a7-b58f4781e760 7bec7856621541c16a5ef928197fec98 { 'aliquot_tag': 'DUP_f4f0a623', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C1245129.miRNA-Seq.T C1245129 GBM miRNA-Seq tumor 7316UP-2923-1104788 210817_UNC31-K00269_0302_AHLCTHBBXY_ATCACG_S25_L002_R1_001.unaln.bam 170850244 BAM unaligned CPTAC3 4c6f9c29-cffd-4122-9105-749f5f157cbf d6b5cf48ec736a8c0b3ba8b4cea74bc2 { 'aliquot_tag': 'ALQ_fd169e65', 'gdc_sample_type': 'Primary Tumor' } -C1245129.RNA-Seq.R1_L002.T C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4113617678 FASTQ R1_L002 unaligned CPTAC3 9146c2dd-2d86-4d94-8fc4-b913e7ad8216 4886899a6f2dd2b1dcf557ce3b7e98ff { 'aliquot_tag': 'ALQ_fd169e65', 'gdc_sample_type': 'Primary Tumor' } -C1245129.RNA-Seq.R2_L002.T C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4453892311 FASTQ R2_L002 unaligned CPTAC3 8f848e37-a739-4737-82e9-8773182905fa c6c2a80a3e779d7abedf6589df2750dc { 'aliquot_tag': 'ALQ_fd169e65', 'gdc_sample_type': 'Primary Tumor' } +C1245129.miRNA-Seq.T.hg38 C1245129 GBM miRNA-Seq tumor 7316UP-2923-1104788 84c32801-ffb5-4041-afc7-b5d3d0d2662c_mirnaseq_gdc_realn.bam 199065248 BAM harmonized CPTAC3 6c761508-f62b-42c9-9d63-ade01e856e12 5275486da0bfc9fc0cf618650b754f6a { 'aliquot_tag': 'ALQ_fd169e65', 'gdc_sample_type': 'Primary Tumor' } +C1245129.RNA-Seq.chimeric.T.hg38 C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 802e0622-e392-49f2-bb57-4d1e13983467.rna_seq.chimeric.gdc_realn.bam 119660118 BAM chimeric harmonized CPTAC3 dad645e8-a9e1-4869-8815-29bcee15350a 3c1984a4f0a7dea71ea76ba4b1f7a8db { 'aliquot_tag': 'ALQ_fd169e65', 'gdc_sample_type': 'Primary Tumor' } +C1245129.RNA-Seq.genomic.T.hg38 C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 802e0622-e392-49f2-bb57-4d1e13983467.rna_seq.genomic.gdc_realn.bam 8972721168 BAM genomic harmonized CPTAC3 dba372d2-a95c-4f22-b47a-eb7be11c2041 28451c204fd1f145d8bfb1911b5e86ef { 'aliquot_tag': 'ALQ_fd169e65', 'gdc_sample_type': 'Primary Tumor' } +C1245129.RNA-Seq.R1_L002.T C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4113617678 FASTQ R1_L002 unaligned CPTAC3 9146c2dd-2d86-4d94-8fc4-b913e7ad8216 4886899a6f2dd2b1dcf557ce3b7e98ff { 'aliquot_tag': 'ALQ_fd169e65', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C1245129.RNA-Seq.R2_L002.T C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 210713_UNC32-K00270_0291_AHLK5VBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4453892311 FASTQ R2_L002 unaligned CPTAC3 8f848e37-a739-4737-82e9-8773182905fa c6c2a80a3e779d7abedf6589df2750dc { 'aliquot_tag': 'ALQ_fd169e65', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C1245129.RNA-Seq.transcriptome.T.hg38 C1245129 GBM RNA-Seq tumor 7316UP-2923-1104788 802e0622-e392-49f2-bb57-4d1e13983467.rna_seq.transcriptome.gdc_realn.bam 19705646268 BAM transcriptome harmonized CPTAC3 8e7327de-3be5-4c40-8956-c72db85c5097 23b41c6100ce50bc120f7b2bc2cddf11 { 'aliquot_tag': 'ALQ_fd169e65', 'gdc_sample_type': 'Primary Tumor' } C1245129.WGS.N C1245129 GBM WGS blood_normal 7316UP-2923-1105282 7316UP-2923-1105282.WholeGenome.RP-2158.bam 48169949339 BAM aligned CPTAC3 b4c0b12c-e914-477c-a18e-ab5053ec2576 54ebe62fa736119316354b00a9f89dc6 { 'aliquot_tag': 'ALQ_a3b4d2f5', 'gdc_sample_type': 'Blood Derived Normal' } +C1245129.WGS.N.hg38 C1245129 GBM WGS blood_normal 7316UP-2923-1105282 20c88342-81c8-4764-9735-20ad94c112dc_wgs_gdc_realn.bam 133936311434 BAM harmonized CPTAC3 d016185e-cf6e-4b21-9841-554ef3d18e7a 1557ae68c0a5250a68848461daba5399 { 'aliquot_tag': 'ALQ_a3b4d2f5', 'gdc_sample_type': 'Blood Derived Normal' } C1245129.WGS.T C1245129 GBM WGS tumor 7316UP-2923-1105251 7316UP-2923-1105251.WholeGenome.RP-2158.bam 62969913054 BAM aligned CPTAC3 ff7d7322-8f44-4cca-a899-bc04dbf62e37 1db7d752ce00873db0601bf84c662060 { 'aliquot_tag': 'ALQ_8f13fd02', 'gdc_sample_type': 'Primary Tumor' } +C1245129.WGS.T.hg38 C1245129 GBM WGS tumor 7316UP-2923-1105251 fb858b07-76dc-48b4-9096-adb0aed38c31_wgs_gdc_realn.bam 182853426065 BAM harmonized CPTAC3 c12354a1-3d98-4407-b4c3-17e3acf05bf4 b94d52f3320ae92bd3e05f4f38eb43a0 { 'aliquot_tag': 'ALQ_8f13fd02', 'gdc_sample_type': 'Primary Tumor' } C1245129.WXS.N C1245129 GBM WXS blood_normal 7316UP-2923-1105282 7316UP-2923-1105282.WholeExome.RP-1303.bam 27679924367 BAM aligned CPTAC3 334eab09-2429-4ae9-9af9-293d49f76501 7d7a86c6c917c358db9576262890de67 { 'aliquot_tag': 'ALQ_a3b4d2f5', 'gdc_sample_type': 'Blood Derived Normal' } +C1245129.WXS.N.hg38 C1245129 GBM WXS blood_normal 7316UP-2923-1105282 20c88342-81c8-4764-9735-20ad94c112dc_wxs_gdc_realn.bam 37470562835 BAM harmonized CPTAC3 db118e85-6218-469d-8655-42d3bf3b75ef c3f2de02733894527425f39467432a13 { 'aliquot_tag': 'ALQ_a3b4d2f5', 'gdc_sample_type': 'Blood Derived Normal' } C1245129.WXS.R C1245129 GBM WXS recurrent_tumor 7316UP-3639-1105256 7316UP-3639-1105256.WholeExome.RP-1303.bam 27204369067 BAM aligned CPTAC3 acb1e32e-2c88-4584-b71a-846497512ffd 2b0d84e73cb5774aff2cc45ab1a53135 { 'aliquot_tag': 'ALQ_63c631a8', 'gdc_sample_type': 'Recurrent Tumor' } +C1245129.WXS.R.hg38 C1245129 GBM WXS recurrent_tumor 7316UP-3639-1105256 b08780d1-2e5b-4dd7-86b3-f49441486e5f_wxs_gdc_realn.bam 36724219417 BAM harmonized CPTAC3 66a0d8b1-6281-4cdc-a867-8727a76e7962 77d34f1105314cafca557a26b8c127d7 { 'aliquot_tag': 'ALQ_63c631a8', 'gdc_sample_type': 'Recurrent Tumor' } C1245129.WXS.T C1245129 GBM WXS tumor 7316UP-2923-1105251 7316UP-2923-1105251.WholeExome.RP-1303.bam 28736155132 BAM aligned CPTAC3 da97bd44-e486-4792-a8ec-76f714fdda25 c4588eb5fefc18bc280d869ae76ccf96 { 'aliquot_tag': 'ALQ_8f13fd02', 'gdc_sample_type': 'Primary Tumor' } +C1245129.WXS.T.hg38 C1245129 GBM WXS tumor 7316UP-2923-1105251 fb858b07-76dc-48b4-9096-adb0aed38c31_wxs_gdc_realn.bam 39273198570 BAM harmonized CPTAC3 923cea70-4973-4a54-ad99-151028fe7669 13416529cba9464b6534908edfad00a7 { 'aliquot_tag': 'ALQ_8f13fd02', 'gdc_sample_type': 'Primary Tumor' } C204057.DUP_4a62de3d.miRNA-Seq.R C204057 GBM miRNA-Seq recurrent_tumor 7316UP-662-1104774 210817_UNC31-K00269_0302_AHLCTHBBXY_CATTTT_S10_L001_R1_001.unaln.bam 521415951 BAM unaligned CPTAC3 8526c4eb-aaa0-4bb3-8812-56020639eb8b 5b7f1d2cfcbedc57992709d47484c72a { 'aliquot_tag': 'DUP_4a62de3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } -C204057.DUP_4a62de3d.RNA-Seq.R1_L003.R C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R1_001.fastq.gz 3677881669 FASTQ R1_L003 unaligned CPTAC3 0e05465c-1a40-4992-b207-86b0751b0fed 1c1742725730066771d56ceb3cd1f302 { 'aliquot_tag': 'DUP_4a62de3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } -C204057.DUP_4a62de3d.RNA-Seq.R2_L003.R C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R2_001.fastq.gz 3967445180 FASTQ R2_L003 unaligned CPTAC3 68b5d360-095b-4ca6-9658-6d780328b56f 54737ba751891af24d40b67fee0fec85 { 'aliquot_tag': 'DUP_4a62de3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C204057.DUP_4a62de3d.miRNA-Seq.R.hg38 C204057 GBM miRNA-Seq recurrent_tumor 7316UP-662-1104774 60f1f3f8-fef8-45b2-beab-36c9291569e8_mirnaseq_gdc_realn.bam 606525934 BAM harmonized CPTAC3 d8dd1512-16f2-4b2d-81a2-b563e73cb9a4 00cbbda3a9d04359959c684b54bf7dae { 'aliquot_tag': 'DUP_4a62de3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C204057.DUP_4a62de3d.RNA-Seq.chimeric.R.hg38 C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 69ab9294-e6f5-43cd-9fb8-fea6dcb55d8d.rna_seq.chimeric.gdc_realn.bam 101149130 BAM chimeric harmonized CPTAC3 f3cd4119-98cb-42d8-afd3-baf748aba113 69b68f372286292349146ffc08014616 { 'aliquot_tag': 'DUP_4a62de3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C204057.DUP_4a62de3d.RNA-Seq.genomic.R.hg38 C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 69ab9294-e6f5-43cd-9fb8-fea6dcb55d8d.rna_seq.genomic.gdc_realn.bam 8538882691 BAM genomic harmonized CPTAC3 2f69044c-80a0-4124-bcfa-77b65f6d2147 8f919ebf3674bb4667f5fa6171a8a35a { 'aliquot_tag': 'DUP_4a62de3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C204057.DUP_4a62de3d.RNA-Seq.R1_L003.R C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R1_001.fastq.gz 3677881669 FASTQ R1_L003 unaligned CPTAC3 0e05465c-1a40-4992-b207-86b0751b0fed 1c1742725730066771d56ceb3cd1f302 { 'aliquot_tag': 'DUP_4a62de3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot', 'read': 'R1', 'lane': 'L003' } +C204057.DUP_4a62de3d.RNA-Seq.R2_L003.R C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCTCTA-GCTCCGAC_S11_L003_R2_001.fastq.gz 3967445180 FASTQ R2_L003 unaligned CPTAC3 68b5d360-095b-4ca6-9658-6d780328b56f 54737ba751891af24d40b67fee0fec85 { 'aliquot_tag': 'DUP_4a62de3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot', 'read': 'R2', 'lane': 'L003' } +C204057.DUP_4a62de3d.RNA-Seq.transcriptome.R.hg38 C204057 GBM RNA-Seq recurrent_tumor 7316UP-662-1104774 69ab9294-e6f5-43cd-9fb8-fea6dcb55d8d.rna_seq.transcriptome.gdc_realn.bam 13237889741 BAM transcriptome harmonized CPTAC3 4b4b9a02-c1b9-4cc6-98e1-4be67f886c24 d101ba55cd060e00ce9c8708068490ff { 'aliquot_tag': 'DUP_4a62de3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } C204057.DUP_970ef0d.WGS.R C204057 GBM WGS recurrent_tumor 7316UP-662-1105237 7316UP-662-1105237.WholeGenome.RP-2158.bam 50399269668 BAM aligned CPTAC3 79cfad83-3cab-4f9a-9d9d-df2bc48e331f 229958594d27f7254f9dec482a2d7e4d { 'aliquot_tag': 'DUP_970ef0d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C204057.DUP_970ef0d.WGS.R.hg38 C204057 GBM WGS recurrent_tumor 7316UP-662-1105237 3465d400-3fc4-410a-b8ba-df88867c8746_wgs_gdc_realn.bam 151816440796 BAM harmonized CPTAC3 abd63736-34f5-4b4c-85fb-337bc843b718 7d40faeafebc5e1ddbea600d30f9daf6 { 'aliquot_tag': 'DUP_970ef0d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C204057.DUP_970ef0d.WXS.R C204057 GBM WXS recurrent_tumor 7316UP-662-1105237 7316UP-662-1105237.WholeExome.RP-1303.bam 22253872234 BAM aligned CPTAC3 ba464092-6b3e-4c16-9ae5-b57c4cd4b9db b751f66d8a0940dc4aa1ff12a0a05616 { 'aliquot_tag': 'DUP_970ef0d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C204057.DUP_970ef0d.WXS.R.hg38 C204057 GBM WXS recurrent_tumor 7316UP-662-1105237 3465d400-3fc4-410a-b8ba-df88867c8746_wxs_gdc_realn.bam 30036095166 BAM harmonized CPTAC3 f37d39a7-a7ad-4c33-a814-680141a6239f b50a855a58a38cfd164f8d07dbd28348 { 'aliquot_tag': 'DUP_970ef0d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C204057.DUP_abe8b610.MethArray.Green.R C204057 GBM Methylation Array recurrent_tumor 7316UP-662 205555380040_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b8cabc20-fe7d-49bc-8f84-8cf4b686eadb 071e228dcf30aa7e5e017e8518d906d7 { 'aliquot_tag': 'DUP_abe8b610', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C204057.DUP_abe8b610.MethArray.Red.R C204057 GBM Methylation Array recurrent_tumor 7316UP-662 205555380040_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 e5a0ec82-28df-4167-9ca1-8b10f616c777 de9ab024a1d7857561dd629748efe052 { 'aliquot_tag': 'DUP_abe8b610', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C204057.DUP_abe8b610.WGS.R C204057 GBM WGS recurrent_tumor 7316UP-662 7316UP-662.WholeGenome.RP-2158.bam 53133400430 BAM aligned CPTAC3 e6e7d712-5903-433f-8773-05a95164edd4 089467a5cca96d4323fa8041906f002f { 'aliquot_tag': 'DUP_abe8b610', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } +C204057.DUP_abe8b610.WGS.R.hg38 C204057 GBM WGS recurrent_tumor 7316UP-662 7a8212fb-e9ec-4fd6-a169-7e943ce00917_wgs_gdc_realn.bam 157725120601 BAM harmonized CPTAC3 5d04ac45-7cb4-4c31-a169-fa49f15ff49b 9ffa39c134aec763b8230d503b3577b2 { 'aliquot_tag': 'DUP_abe8b610', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C204057.DUP_abe8b610.WXS.R C204057 GBM WXS recurrent_tumor 7316UP-662 7316UP-662.WholeExome.RP-1303.bam 13295977421 BAM aligned CPTAC3 940f4454-bee3-47bd-ae39-72c2b13c0ca8 19ee3e35dcca8e5720463f0e508fcae7 { 'aliquot_tag': 'DUP_abe8b610', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } +C204057.DUP_abe8b610.WXS.R.hg38 C204057 GBM WXS recurrent_tumor 7316UP-662 7a8212fb-e9ec-4fd6-a169-7e943ce00917_wxs_gdc_realn.bam 18177857084 BAM harmonized CPTAC3 647e7ef3-b315-4885-b6eb-952d56aa1429 ac154d0d05621b157aa2b0475577ce77 { 'aliquot_tag': 'DUP_abe8b610', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C204057.DUP_fb79d37d.MethArray.Green.T C204057 GBM Methylation Array tumor 7316UP-302 205854150169_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9f1ca366-1265-475f-97c9-48b62502632d 946ffa94c50b57644f39a44d81ac8398 { 'aliquot_tag': 'DUP_fb79d37d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C204057.DUP_fb79d37d.MethArray.Red.T C204057 GBM Methylation Array tumor 7316UP-302 205854150169_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 d11a04a3-1094-4ba1-92b1-55e4e101485b 3d55405504538e7af602fc5faa60742b { 'aliquot_tag': 'DUP_fb79d37d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C204057.DUP_fb79d37d.WGS.T C204057 GBM WGS tumor 7316UP-302 7316UP-302.WholeGenome.RP-2158.bam 63043564130 BAM aligned CPTAC3 1a331d7c-1fdf-465a-8e6f-f0ea3e83c361 9f81c4d8a556b7dd7651381184fa2798 { 'aliquot_tag': 'DUP_fb79d37d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C204057.DUP_fb79d37d.WGS.T.hg38 C204057 GBM WGS tumor 7316UP-302 b1b62bc9-91c7-416b-92c8-35f6e197980a_wgs_gdc_realn.bam 188708361770 BAM harmonized CPTAC3 589369f6-0b4f-4252-87e1-bdc4aa0a235d 8bad76a8e5cdaa5ee4dff62c9b86ecc7 { 'aliquot_tag': 'DUP_fb79d37d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C204057.DUP_fb79d37d.WXS.T C204057 GBM WXS tumor 7316UP-302 7316UP-302.WholeExome.RP-1303.bam 26620556360 BAM aligned CPTAC3 fcdbdf5e-1e17-41ad-a0a0-1e91613c2e20 5b55167488303a570a6fe332955414ee { 'aliquot_tag': 'DUP_fb79d37d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C204057.DUP_fb79d37d.WXS.T.hg38 C204057 GBM WXS tumor 7316UP-302 b1b62bc9-91c7-416b-92c8-35f6e197980a_wxs_gdc_realn.bam 36138400689 BAM harmonized CPTAC3 6a93dee0-802a-47cc-90a5-37f686a9aebf 4b02bda3ae09d43d5883c49bcfc720f6 { 'aliquot_tag': 'DUP_fb79d37d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C204057.miRNA-Seq.T C204057 GBM miRNA-Seq tumor 7316UP-302-1104767 210817_UNC31-K00269_0302_AHLCTHBBXY_CAAAAG_S3_L001_R1_001.unaln.bam 509744176 BAM unaligned CPTAC3 12cf72af-38ef-4d78-b56d-b92e82aa0f22 0dbd1e59b93dbb8604b58a45f7a3d254 { 'aliquot_tag': 'ALQ_b63962c3', 'gdc_sample_type': 'Primary Tumor' } -C204057.RNA-Seq.R1_L008.T C204057 GBM RNA-Seq tumor 7316UP-302-1104767 210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R1_001.fastq.gz 3528309965 FASTQ R1_L008 unaligned CPTAC3 64bde2bf-7ccb-4c66-b3a0-8e3c9c5b2b37 20ac0424955a7467b7fadccdcc466f33 { 'aliquot_tag': 'ALQ_b63962c3', 'gdc_sample_type': 'Primary Tumor' } -C204057.RNA-Seq.R2_L008.T C204057 GBM RNA-Seq tumor 7316UP-302-1104767 210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R2_001.fastq.gz 3876277963 FASTQ R2_L008 unaligned CPTAC3 8e892ebf-f748-4b16-b9fb-bad025c61d0b 3d8aa0695e65046ba351a65e72285d8b { 'aliquot_tag': 'ALQ_b63962c3', 'gdc_sample_type': 'Primary Tumor' } +C204057.miRNA-Seq.T.hg38 C204057 GBM miRNA-Seq tumor 7316UP-302-1104767 c54cbbf3-bc52-456c-b6a8-983443eb9293_mirnaseq_gdc_realn.bam 582705856 BAM harmonized CPTAC3 023c8b7c-be32-4652-a82a-c9ad989327f8 d462fc3608c74e8888d022648d383c49 { 'aliquot_tag': 'ALQ_b63962c3', 'gdc_sample_type': 'Primary Tumor' } +C204057.RNA-Seq.chimeric.T.hg38 C204057 GBM RNA-Seq tumor 7316UP-302-1104767 8f499d98-c8f8-4eb7-8248-04a1f170ab61.rna_seq.chimeric.gdc_realn.bam 55525337 BAM chimeric harmonized CPTAC3 06f6e7eb-34b7-4119-8702-c03923b9ce1d fc708895f2bdc73179660bdec669b844 { 'aliquot_tag': 'ALQ_b63962c3', 'gdc_sample_type': 'Primary Tumor' } +C204057.RNA-Seq.genomic.T.hg38 C204057 GBM RNA-Seq tumor 7316UP-302-1104767 8f499d98-c8f8-4eb7-8248-04a1f170ab61.rna_seq.genomic.gdc_realn.bam 9177202279 BAM genomic harmonized CPTAC3 049ce0cf-c9c6-40e6-83e1-a52724f9426a 2398a3473950bb4854e9ae005610c3c0 { 'aliquot_tag': 'ALQ_b63962c3', 'gdc_sample_type': 'Primary Tumor' } +C204057.RNA-Seq.R1_L008.T C204057 GBM RNA-Seq tumor 7316UP-302-1104767 210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R1_001.fastq.gz 3528309965 FASTQ R1_L008 unaligned CPTAC3 64bde2bf-7ccb-4c66-b3a0-8e3c9c5b2b37 20ac0424955a7467b7fadccdcc466f33 { 'aliquot_tag': 'ALQ_b63962c3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C204057.RNA-Seq.R2_L008.T C204057 GBM RNA-Seq tumor 7316UP-302-1104767 210713_UNC32-K00270_0291_AHLK5VBBXY_GGACTTGG-CGCAGACG_S31_L008_R2_001.fastq.gz 3876277963 FASTQ R2_L008 unaligned CPTAC3 8e892ebf-f748-4b16-b9fb-bad025c61d0b 3d8aa0695e65046ba351a65e72285d8b { 'aliquot_tag': 'ALQ_b63962c3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C204057.RNA-Seq.transcriptome.T.hg38 C204057 GBM RNA-Seq tumor 7316UP-302-1104767 8f499d98-c8f8-4eb7-8248-04a1f170ab61.rna_seq.transcriptome.gdc_realn.bam 14324601436 BAM transcriptome harmonized CPTAC3 5a8fdf6e-4cd1-4b7d-be7c-6dd79cbf286a 47eec3014922df7c5ef61caedd4655cc { 'aliquot_tag': 'ALQ_b63962c3', 'gdc_sample_type': 'Primary Tumor' } C204057.WGS.N C204057 GBM WGS blood_normal 7316UP-302-1105284 7316UP-302-1105284.WholeGenome.RP-2158.bam 51382775991 BAM aligned CPTAC3 4fcea472-64ed-4e2a-ad0b-832dd6fba527 8a2cd1f84171daff22db4280eb748a97 { 'aliquot_tag': 'ALQ_fc4bb79', 'gdc_sample_type': 'Blood Derived Normal' } +C204057.WGS.N.hg38 C204057 GBM WGS blood_normal 7316UP-302-1105284 881dda1b-14e9-4952-875d-033de239cc69_wgs_gdc_realn.bam 156336585636 BAM harmonized CPTAC3 355b4d9c-302a-4ac1-a27f-8f6c38ab51b1 3262c4134467a2b4675c0dd3ced1ee2f { 'aliquot_tag': 'ALQ_fc4bb79', 'gdc_sample_type': 'Blood Derived Normal' } C204057.WGS.T C204057 GBM WGS tumor 7316UP-302-1105230 7316UP-302-1105230.WholeGenome.RP-2158.bam 49458426510 BAM aligned CPTAC3 d4819119-dcc7-45f5-8c8e-70624744ed84 5d733d33aaea6ad5b973cc65e66a45ce { 'aliquot_tag': 'ALQ_eb5da6ab', 'gdc_sample_type': 'Primary Tumor' } +C204057.WGS.T.hg38 C204057 GBM WGS tumor 7316UP-302-1105230 73fbc689-0c62-4ccb-8aaf-6d3697fc06e1_wgs_gdc_realn.bam 148956827638 BAM harmonized CPTAC3 f1b9b874-d882-4b5b-9573-0bae4430d09b c07ed50271de01db0438a70627500071 { 'aliquot_tag': 'ALQ_eb5da6ab', 'gdc_sample_type': 'Primary Tumor' } C204057.WXS.N C204057 GBM WXS blood_normal 7316UP-302-1105284 7316UP-302-1105284.WholeExome.RP-1303.bam 23573196077 BAM aligned CPTAC3 8564b3ee-d4dc-4ba1-9752-4ecd0fdb35af df125056956ed2568efd200039ac6237 { 'aliquot_tag': 'ALQ_fc4bb79', 'gdc_sample_type': 'Blood Derived Normal' } +C204057.WXS.N.hg38 C204057 GBM WXS blood_normal 7316UP-302-1105284 881dda1b-14e9-4952-875d-033de239cc69_wxs_gdc_realn.bam 32070630898 BAM harmonized CPTAC3 0c1806b6-b54a-45ab-8f07-881b500abb78 cfb6f5816d8280e3eab16b93e8bd1f78 { 'aliquot_tag': 'ALQ_fc4bb79', 'gdc_sample_type': 'Blood Derived Normal' } C204057.WXS.R C204057 GBM WXS recurrent_tumor 7316UP-662-1105227 7316UP-662-1105227.WholeExome.RP-1303.bam 27949418001 BAM aligned CPTAC3 79856ba8-1268-4a1f-b2c6-728e2191df5f 71cca779179fc942f22a0d4a871bd001 { 'aliquot_tag': 'ALQ_106bde4c', 'gdc_sample_type': 'Recurrent Tumor' } +C204057.WXS.R.hg38 C204057 GBM WXS recurrent_tumor 7316UP-662-1105227 0f5d2f2b-4a5d-4e6f-bb16-f6e6775e77de_wxs_gdc_realn.bam 37856594228 BAM harmonized CPTAC3 87c465ee-3126-4912-a605-014c6495376e 15f5c8e13eef42d401e71828171b0cf2 { 'aliquot_tag': 'ALQ_106bde4c', 'gdc_sample_type': 'Recurrent Tumor' } C204057.WXS.T C204057 GBM WXS tumor 7316UP-302-1105230 7316UP-302-1105230.WholeExome.RP-1303.bam 21477886080 BAM aligned CPTAC3 c42d58e9-87d7-434d-86d9-a8365d4d6f91 81d2e1d633bfe9d2321f7861e5e4d48f { 'aliquot_tag': 'ALQ_eb5da6ab', 'gdc_sample_type': 'Primary Tumor' } +C204057.WXS.T.hg38 C204057 GBM WXS tumor 7316UP-302-1105230 73fbc689-0c62-4ccb-8aaf-6d3697fc06e1_wxs_gdc_realn.bam 29244557440 BAM harmonized CPTAC3 a3e622c4-b84b-41a3-810a-97bf521ba9a9 edb94b33da4781e99805e56a2b15e3de { 'aliquot_tag': 'ALQ_eb5da6ab', 'gdc_sample_type': 'Primary Tumor' } C207624.DUP_39bda097.MethArray.Green.R C207624 GBM Methylation Array recurrent_tumor 7316UP-961 205705530002_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 55a73a6f-675b-45e4-8c6d-8d001ef6dcf7 38556dc7fa206d58684e1f6213c05659 { 'aliquot_tag': 'DUP_39bda097', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C207624.DUP_39bda097.MethArray.Red.R C207624 GBM Methylation Array recurrent_tumor 7316UP-961 205705530002_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 62e0eeb7-8d76-43c5-8383-c29d50644825 7fa0ebd2c193192003cb9af7b4c55f95 { 'aliquot_tag': 'DUP_39bda097', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C207624.DUP_39bda097.WGS.R C207624 GBM WGS recurrent_tumor 7316UP-961 7316UP-961.WholeGenome.RP-2158.bam 48539159794 BAM aligned CPTAC3 daec3268-ea08-44c8-856f-f42bff316c6b f6638cdd41f767130800eedcb7e57caf { 'aliquot_tag': 'DUP_39bda097', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C207624.DUP_39bda097.WGS.R.hg38 C207624 GBM WGS recurrent_tumor 7316UP-961 432a45a0-ae46-4a33-a465-0d3434e6093a_wgs_gdc_realn.bam 147035556436 BAM harmonized CPTAC3 e7077c1b-99cb-4498-9dfa-306b2f5415eb b2ac66692816068c3957d24ff573f6ed { 'aliquot_tag': 'DUP_39bda097', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C207624.DUP_39bda097.WXS.R C207624 GBM WXS recurrent_tumor 7316UP-961 7316UP-961.WholeExome.RP-1303.bam 31458355354 BAM aligned CPTAC3 82200a05-7175-45ac-b33a-023baec9c206 8d4741c4c8279ecd037b63d68ada06ee { 'aliquot_tag': 'DUP_39bda097', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C207624.DUP_39bda097.WXS.R.hg38 C207624 GBM WXS recurrent_tumor 7316UP-961 432a45a0-ae46-4a33-a465-0d3434e6093a_wxs_gdc_realn.bam 42379057118 BAM harmonized CPTAC3 e0c0f08d-5dac-4e2d-a50c-baa692a6d650 61dbc889ea21f421770ad9fd394c7573 { 'aliquot_tag': 'DUP_39bda097', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C207624.DUP_8ab52100.MethArray.Green.T C207624 GBM Methylation Array tumor 7316UP-603 205707890115_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 c1ce334d-2013-4766-bd07-27c9185511b9 bbad0355210ece1fe5696263ebf42038 { 'aliquot_tag': 'DUP_8ab52100', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C207624.DUP_8ab52100.MethArray.Red.T C207624 GBM Methylation Array tumor 7316UP-603 205707890115_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 608cb82b-4b05-44d7-b633-39965a9b2f9e 65669e8deaa5dd2247df0914fcf55467 { 'aliquot_tag': 'DUP_8ab52100', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C207624.DUP_8ab52100.WGS.T C207624 GBM WGS tumor 7316UP-603 7316UP-603.WholeGenome.RP-2158.bam 44572387735 BAM aligned CPTAC3 6672f7c2-cdfc-4b49-a4a2-7c6268af8e3f 10674ff683bc6dd56de7f7763652142b { 'aliquot_tag': 'DUP_8ab52100', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C207624.DUP_8ab52100.WGS.T.hg38 C207624 GBM WGS tumor 7316UP-603 fd0af1cc-2bd5-4433-b288-a8f95f0f4eb9_wgs_gdc_realn.bam 374013516593 BAM harmonized CPTAC3 4640f446-9179-43cd-b41c-5c5ef7251c59 d5e80e251cb012ced49804ef05a7a3ad { 'aliquot_tag': 'DUP_8ab52100', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C207624.DUP_8ab52100.WXS.T C207624 GBM WXS tumor 7316UP-603 7316UP-603.WholeExome.RP-1303.bam 23500383490 BAM aligned CPTAC3 21f27e5a-f142-436a-b61f-acd923395bde e8246c5d1764e772adce1746ac746b68 { 'aliquot_tag': 'DUP_8ab52100', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C207624.DUP_8ab52100.WXS.T.hg38 C207624 GBM WXS tumor 7316UP-603 fd0af1cc-2bd5-4433-b288-a8f95f0f4eb9_wxs_gdc_realn.bam 31950446410 BAM harmonized CPTAC3 370da836-9a04-4ad5-9b4f-11270f994e3c 7cb72144dfb577eb84955687b43f85df { 'aliquot_tag': 'DUP_8ab52100', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C207624.miRNA-Seq.R C207624 GBM miRNA-Seq recurrent_tumor 7316UP-961-1104765 210817_UNC31-K00269_0302_AHLCTHBBXY_ATGAGC_S1_L001_R1_001.unaln.bam 304375832 BAM unaligned CPTAC3 d0e95499-39a8-4dd2-826d-ae5806ddeb02 3709435a958c3b08e12f848edfc4c50f { 'aliquot_tag': 'ALQ_8e0b17e9', 'gdc_sample_type': 'Recurrent Tumor' } +C207624.miRNA-Seq.R.hg38 C207624 GBM miRNA-Seq recurrent_tumor 7316UP-961-1104765 0c86d4ea-afa3-4129-8d63-928a637fc1ca_mirnaseq_gdc_realn.bam 337684567 BAM harmonized CPTAC3 38e154d0-8876-49b3-b54b-62f03e25303f e82e4d6b7e82a6c01de1f5b707312f3f { 'aliquot_tag': 'ALQ_8e0b17e9', 'gdc_sample_type': 'Recurrent Tumor' } C207624.miRNA-Seq.T C207624 GBM miRNA-Seq tumor 7316UP-603-1104773 220125_UNC32-K00270_0311_AHMNYYBBXY_CCAACA_S8_L002_R1_001.unaln.bam 210809739 BAM unaligned CPTAC3 b164fd3d-fae8-41e6-8616-7751408cef41 0194a737c2b426c6dc998aae583fe7a5 { 'aliquot_tag': 'ALQ_ce632f9a', 'gdc_sample_type': 'Primary Tumor' } -C207624.RNA-Seq.R1_L002.R C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R1_001.fastq.gz 3805401120 FASTQ R1_L002 unaligned CPTAC3 3f6a1a61-d46d-4ec0-9635-1501d10f1e92 c440a9bc1ce5b24d6eef6b8108d63c77 { 'aliquot_tag': 'ALQ_8e0b17e9', 'gdc_sample_type': 'Recurrent Tumor' } -C207624.RNA-Seq.R1_L006.T C207624 GBM RNA-Seq tumor 7316UP-603-1104773 210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R1_001.fastq.gz 4159870756 FASTQ R1_L006 unaligned CPTAC3 851d1582-47e3-4694-a4ce-54b4f0ca7865 11fce1b39c68ad5a90fe8c12b6dbb44f { 'aliquot_tag': 'ALQ_ce632f9a', 'gdc_sample_type': 'Primary Tumor' } -C207624.RNA-Seq.R2_L002.R C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R2_001.fastq.gz 4104689026 FASTQ R2_L002 unaligned CPTAC3 2b27d4e4-a94c-47e7-92d3-f317938b113c 1c0e87382af67ba51c6fb226195f4a86 { 'aliquot_tag': 'ALQ_8e0b17e9', 'gdc_sample_type': 'Recurrent Tumor' } -C207624.RNA-Seq.R2_L006.T C207624 GBM RNA-Seq tumor 7316UP-603-1104773 210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R2_001.fastq.gz 4566212973 FASTQ R2_L006 unaligned CPTAC3 e3e4c767-7287-4451-9f1c-8b00cd2f8dd1 6b9ab39deed7cf5f8de14be482b5a544 { 'aliquot_tag': 'ALQ_ce632f9a', 'gdc_sample_type': 'Primary Tumor' } +C207624.miRNA-Seq.T.hg38 C207624 GBM miRNA-Seq tumor 7316UP-603-1104773 218558d0-28d6-49d4-bb9a-64ac1fb77cb7_mirnaseq_gdc_realn.bam 248178964 BAM harmonized CPTAC3 12e8682c-6e14-40f3-9a72-51fde1c95fdb 07b8a41b78d2b7890b8d8d0d2b52ad57 { 'aliquot_tag': 'ALQ_ce632f9a', 'gdc_sample_type': 'Primary Tumor' } +C207624.RNA-Seq.chimeric.R.hg38 C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 ca15c78e-f808-4173-85a2-fc3e1243a523.rna_seq.chimeric.gdc_realn.bam 60234867 BAM chimeric harmonized CPTAC3 461747d9-96d8-40f6-afe7-d9be0c7ecf2e 9df1d8fb1f3c9b6edb8fea12e1c44d0e { 'aliquot_tag': 'ALQ_8e0b17e9', 'gdc_sample_type': 'Recurrent Tumor' } +C207624.RNA-Seq.chimeric.T.hg38 C207624 GBM RNA-Seq tumor 7316UP-603-1104773 3afd536f-bd5e-431b-8524-a9f5fb0c9d7c.rna_seq.chimeric.gdc_realn.bam 119564683 BAM chimeric harmonized CPTAC3 57a68cca-2a51-4d43-b548-82013fcdad76 add78b09b0ff0b3d7085d6da5edfb955 { 'aliquot_tag': 'ALQ_ce632f9a', 'gdc_sample_type': 'Primary Tumor' } +C207624.RNA-Seq.genomic.R.hg38 C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 ca15c78e-f808-4173-85a2-fc3e1243a523.rna_seq.genomic.gdc_realn.bam 8812826716 BAM genomic harmonized CPTAC3 9886fc0f-f118-47a7-a890-ae83f1754079 6f776a4b6c0b5a0e4e290a9c7c9cb8b0 { 'aliquot_tag': 'ALQ_8e0b17e9', 'gdc_sample_type': 'Recurrent Tumor' } +C207624.RNA-Seq.genomic.T.hg38 C207624 GBM RNA-Seq tumor 7316UP-603-1104773 3afd536f-bd5e-431b-8524-a9f5fb0c9d7c.rna_seq.genomic.gdc_realn.bam 8906386377 BAM genomic harmonized CPTAC3 ecf3e22c-87fa-4521-b475-9f51005d3c57 b27847e36933c3cb51be9763ae5b4452 { 'aliquot_tag': 'ALQ_ce632f9a', 'gdc_sample_type': 'Primary Tumor' } +C207624.RNA-Seq.R1_L002.R C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R1_001.fastq.gz 3805401120 FASTQ R1_L002 unaligned CPTAC3 3f6a1a61-d46d-4ec0-9635-1501d10f1e92 c440a9bc1ce5b24d6eef6b8108d63c77 { 'aliquot_tag': 'ALQ_8e0b17e9', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L002' } +C207624.RNA-Seq.R1_L006.T C207624 GBM RNA-Seq tumor 7316UP-603-1104773 210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R1_001.fastq.gz 4159870756 FASTQ R1_L006 unaligned CPTAC3 851d1582-47e3-4694-a4ce-54b4f0ca7865 11fce1b39c68ad5a90fe8c12b6dbb44f { 'aliquot_tag': 'ALQ_ce632f9a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C207624.RNA-Seq.R2_L002.R C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 210713_UNC32-K00270_0291_AHLK5VBBXY_CTTGGTAT-CCAAGTCC_S7_L002_R2_001.fastq.gz 4104689026 FASTQ R2_L002 unaligned CPTAC3 2b27d4e4-a94c-47e7-92d3-f317938b113c 1c0e87382af67ba51c6fb226195f4a86 { 'aliquot_tag': 'ALQ_8e0b17e9', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L002' } +C207624.RNA-Seq.R2_L006.T C207624 GBM RNA-Seq tumor 7316UP-603-1104773 210811_UNC31-K00269_0301_AHLLC5BBXY_TTGCCTAG-ACCACTTA_S24_L006_R2_001.fastq.gz 4566212973 FASTQ R2_L006 unaligned CPTAC3 e3e4c767-7287-4451-9f1c-8b00cd2f8dd1 6b9ab39deed7cf5f8de14be482b5a544 { 'aliquot_tag': 'ALQ_ce632f9a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C207624.RNA-Seq.transcriptome.R.hg38 C207624 GBM RNA-Seq recurrent_tumor 7316UP-961-1104765 ca15c78e-f808-4173-85a2-fc3e1243a523.rna_seq.transcriptome.gdc_realn.bam 17709819823 BAM transcriptome harmonized CPTAC3 04953bce-c19e-4182-9e06-a54f0c3ff368 2141573c0f2880890d0b6e030a41bb50 { 'aliquot_tag': 'ALQ_8e0b17e9', 'gdc_sample_type': 'Recurrent Tumor' } +C207624.RNA-Seq.transcriptome.T.hg38 C207624 GBM RNA-Seq tumor 7316UP-603-1104773 3afd536f-bd5e-431b-8524-a9f5fb0c9d7c.rna_seq.transcriptome.gdc_realn.bam 15949289625 BAM transcriptome harmonized CPTAC3 4cf455f3-03b8-4c5e-8972-679bd4dbe32c 663502bdb532d157a1672fbf243999b9 { 'aliquot_tag': 'ALQ_ce632f9a', 'gdc_sample_type': 'Primary Tumor' } C207624.WGS.N C207624 GBM WGS blood_normal 7316UP-603-1105207 7316UP-603-1105207.WholeGenome.RP-2158.bam 48365906283 BAM aligned CPTAC3 5d553f09-86f8-4815-8cea-4173bcf82b4d 597298ebb33213e2bc64e8e294c03d3f { 'aliquot_tag': 'ALQ_3838d8ca', 'gdc_sample_type': 'Blood Derived Normal' } +C207624.WGS.N.hg38 C207624 GBM WGS blood_normal 7316UP-603-1105207 6b62ddb3-3254-4be1-a8b9-f4bdf604084f_wgs_gdc_realn.bam 147386095799 BAM harmonized CPTAC3 60ee616b-34ea-4cb4-a7b9-ee547438873e 69c52914a18e6b89770303afbb414cc5 { 'aliquot_tag': 'ALQ_3838d8ca', 'gdc_sample_type': 'Blood Derived Normal' } C207624.WGS.R C207624 GBM WGS recurrent_tumor 7316UP-961-1105228 7316UP-961-1105228.WholeGenome.RP-2158.bam 51892018820 BAM aligned CPTAC3 86a56d79-40ac-47fe-8c62-7f854fa6fc68 22210c926a27db709a47b8da5c5df378 { 'aliquot_tag': 'ALQ_2aa10bde', 'gdc_sample_type': 'Recurrent Tumor' } +C207624.WGS.R.hg38 C207624 GBM WGS recurrent_tumor 7316UP-961-1105228 5ca71d91-4680-43ff-bd33-c3d8fa14a225_wgs_gdc_realn.bam 154953390320 BAM harmonized CPTAC3 7c11efdf-e845-4f94-a953-cb56dcd035bc 9ce8d219856560048b098f739cf35ad3 { 'aliquot_tag': 'ALQ_2aa10bde', 'gdc_sample_type': 'Recurrent Tumor' } C207624.WXS.N C207624 GBM WXS blood_normal 7316UP-603-1105207 7316UP-603-1105207.WholeExome.RP-1303.bam 22981380825 BAM aligned CPTAC3 f5130800-4b65-43c8-a053-2b6e914c590b cb00ec231ffaa2f0905a240437480173 { 'aliquot_tag': 'ALQ_3838d8ca', 'gdc_sample_type': 'Blood Derived Normal' } +C207624.WXS.N.hg38 C207624 GBM WXS blood_normal 7316UP-603-1105207 6b62ddb3-3254-4be1-a8b9-f4bdf604084f_wxs_gdc_realn.bam 31201072361 BAM harmonized CPTAC3 79625f39-4daa-494d-8913-7ed53fc923a8 ad4fb03b09afb1d1e9156a25eb396faa { 'aliquot_tag': 'ALQ_3838d8ca', 'gdc_sample_type': 'Blood Derived Normal' } C207624.WXS.R C207624 GBM WXS recurrent_tumor 7316UP-961-1105228 7316UP-961-1105228.WholeExome.RP-1303.bam 26058311240 BAM aligned CPTAC3 8845f830-2f50-42de-94fb-2f0a30ab221e 6f20b9db6058f7910af131aa19da6310 { 'aliquot_tag': 'ALQ_2aa10bde', 'gdc_sample_type': 'Recurrent Tumor' } +C207624.WXS.R.hg38 C207624 GBM WXS recurrent_tumor 7316UP-961-1105228 5ca71d91-4680-43ff-bd33-c3d8fa14a225_wxs_gdc_realn.bam 35272049609 BAM harmonized CPTAC3 ef71d6a1-7f85-4bd4-8377-9d47ac79cd42 2473249ccd19449acc4e90e0a0f6ec23 { 'aliquot_tag': 'ALQ_2aa10bde', 'gdc_sample_type': 'Recurrent Tumor' } C207624.WXS.T C207624 GBM WXS tumor 7316UP-603-1105236 7316UP-603-1105236.WholeExome.RP-1303.bam 21605528792 BAM aligned CPTAC3 22146368-cc6c-4e49-9e71-1447474fd49a d160d7fc288281652e2fb8c080522473 { 'aliquot_tag': 'ALQ_6412bb9f', 'gdc_sample_type': 'Primary Tumor' } +C207624.WXS.T.hg38 C207624 GBM WXS tumor 7316UP-603-1105236 0af3abb3-d73f-47f4-9f8a-9ac41d230bca_wxs_gdc_realn.bam 29550234938 BAM harmonized CPTAC3 1252d351-fbb5-4716-b862-028f33399922 30c91c33118c9261f9509eb0c5165d3a { 'aliquot_tag': 'ALQ_6412bb9f', 'gdc_sample_type': 'Primary Tumor' } C208854.DUP_15b44502.WGS.T C208854 GBM WGS tumor 7316UP-613-1105231 7316UP-613-1105231.WholeGenome.RP-2158.bam 53280267937 BAM aligned CPTAC3 8567ce1f-6929-4a83-b435-515b66d20482 fecadcabd3805c78f4c8058849d33403 { 'aliquot_tag': 'DUP_15b44502', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C208854.DUP_15b44502.WGS.T.hg38 C208854 GBM WGS tumor 7316UP-613-1105231 eb327532-25bd-4c10-a414-185474bdb7ef_wgs_gdc_realn.bam 154892466395 BAM harmonized CPTAC3 ce084882-0179-4eff-8700-3f917d1a9f5f ef075ada7471d8b75fdb42aff21894e9 { 'aliquot_tag': 'DUP_15b44502', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C208854.DUP_15b44502.WXS.T C208854 GBM WXS tumor 7316UP-613-1105231 7316UP-613-1105231.WholeExome.RP-1303.bam 23980456638 BAM aligned CPTAC3 590d290b-2003-4d87-b61f-4b6ad5d5b241 375876a5012e7a1e191e88ffaeff4528 { 'aliquot_tag': 'DUP_15b44502', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C208854.DUP_15b44502.WXS.T.hg38 C208854 GBM WXS tumor 7316UP-613-1105231 eb327532-25bd-4c10-a414-185474bdb7ef_wxs_gdc_realn.bam 33178156314 BAM harmonized CPTAC3 18f09f19-5cc3-413d-968f-a574a8a6084d f6abe07ddf1a37a12ec488389acfc2c3 { 'aliquot_tag': 'DUP_15b44502', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C208854.DUP_2e7d19e4.MethArray.Green.R C208854 GBM Methylation Array recurrent_tumor 7316UP-979 205705520023_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 27b06d69-8b8b-4c5b-b107-c5e32fd34da5 97be70c79ad40d2c8a267bd69268ef48 { 'aliquot_tag': 'DUP_2e7d19e4', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C208854.DUP_2e7d19e4.MethArray.Red.R C208854 GBM Methylation Array recurrent_tumor 7316UP-979 205705520023_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 b6538f9f-5cef-4150-8cc0-b0b860a5b4f9 4d9e84f77a171c9d2958611aec756b05 { 'aliquot_tag': 'DUP_2e7d19e4', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C208854.DUP_2e7d19e4.WGS.R C208854 GBM WGS recurrent_tumor 7316UP-979 7316UP-979.WholeGenome.RP-2158.bam 55074581506 BAM aligned CPTAC3 78df3313-e73b-4af5-9f48-b6355a6a92d9 ad09713853c02104c8b8b13e20ce08e2 { 'aliquot_tag': 'DUP_2e7d19e4', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C208854.DUP_2e7d19e4.WGS.R.hg38 C208854 GBM WGS recurrent_tumor 7316UP-979 4a081753-34c5-425c-834b-a58bf7f6852a_wgs_gdc_realn.bam 164232072640 BAM harmonized CPTAC3 1a3d7f15-88b2-4db5-8ee9-5165f73e6c95 f59b28067d3116019a8d36026559aa1d { 'aliquot_tag': 'DUP_2e7d19e4', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C208854.DUP_2e7d19e4.WXS.R C208854 GBM WXS recurrent_tumor 7316UP-979 7316UP-979.WholeExome.RP-1303.bam 31361921312 BAM aligned CPTAC3 aa0cc5f9-9b08-4f3a-b55c-1db2b68f82db 0ad32e6dc8343e6dad27b661e87c1a1e { 'aliquot_tag': 'DUP_2e7d19e4', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C208854.DUP_2e7d19e4.WXS.R.hg38 C208854 GBM WXS recurrent_tumor 7316UP-979 4a081753-34c5-425c-834b-a58bf7f6852a_wxs_gdc_realn.bam 43685335710 BAM harmonized CPTAC3 ee614c68-b0f8-4e3b-ac11-408cb4bc95ad 38cc108f534accd6814235ca15b0813c { 'aliquot_tag': 'DUP_2e7d19e4', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C208854.DUP_93ae1041.MethArray.Green.T C208854 GBM Methylation Array tumor 7316UP-613 205854140169_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 753dca8a-c538-4461-bbc9-6f428acf886e 47d2f3b2fcb8d627639ee5b02967915f { 'aliquot_tag': 'DUP_93ae1041', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot' } C208854.DUP_93ae1041.MethArray.Red.T C208854 GBM Methylation Array tumor 7316UP-613 205854140169_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 42ef4394-bca9-4f06-b2c1-ee5917845ab2 1bc919e6626a14af3781cec9532dbad7 { 'aliquot_tag': 'DUP_93ae1041', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot' } C208854.DUP_93ae1041.WGS.T C208854 GBM WGS tumor 7316UP-613 7316UP-613.WholeGenome.RP-2158.bam 51528547167 BAM aligned CPTAC3 27997ad0-1509-45b0-b324-54b37ae66cde f556e6fabac000b143bd95ec3517bcf9 { 'aliquot_tag': 'DUP_93ae1041', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot' } +C208854.DUP_93ae1041.WGS.T.hg38 C208854 GBM WGS tumor 7316UP-613 9c504d59-e2a4-492c-ae3a-993e3f802cef_wgs_gdc_realn.bam 150118668478 BAM harmonized CPTAC3 a3290f46-6977-427f-8c5b-0f3f02d4e85f ea26602504e929f820651ed2ef442f33 { 'aliquot_tag': 'DUP_93ae1041', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot' } C208854.DUP_93ae1041.WXS.T C208854 GBM WXS tumor 7316UP-613 7316UP-613.WholeExome.RP-1303.bam 21743058805 BAM aligned CPTAC3 192f3f34-7cb3-489a-a136-46c1257a12d5 75b9bb757b9ef9b49c1cb54f80a4c066 { 'aliquot_tag': 'DUP_93ae1041', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot' } +C208854.DUP_93ae1041.WXS.T.hg38 C208854 GBM WXS tumor 7316UP-613 9c504d59-e2a4-492c-ae3a-993e3f802cef_wxs_gdc_realn.bam 29608380930 BAM harmonized CPTAC3 af9ba009-d30c-4629-98a5-80c96e605e94 6940fb901cfdb81d96801b9797288018 { 'aliquot_tag': 'DUP_93ae1041', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Primary Tumor DNA Aliquot' } C208854.DUP_af68ac6d.miRNA-Seq.T C208854 GBM miRNA-Seq tumor 7316UP-613-1104768 210817_UNC31-K00269_0302_AHLCTHBBXY_CAACTA_S4_L001_R1_001.unaln.bam 319124792 BAM unaligned CPTAC3 96ae0e23-3609-4e92-8cce-73a084757155 000e987907995d7fd1b2e7a145e9feea { 'aliquot_tag': 'DUP_af68ac6d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot' } -C208854.DUP_af68ac6d.RNA-Seq.R1_L004.T C208854 GBM RNA-Seq tumor 7316UP-613-1104768 210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R1_001.fastq.gz 3590219283 FASTQ R1_L004 unaligned CPTAC3 182139b3-ba15-4e62-b4c8-572f6aa6937c d4b703f1ea765e87cf8d1b211b2aa324 { 'aliquot_tag': 'DUP_af68ac6d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot' } -C208854.DUP_af68ac6d.RNA-Seq.R2_L004.T C208854 GBM RNA-Seq tumor 7316UP-613-1104768 210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R2_001.fastq.gz 3900126651 FASTQ R2_L004 unaligned CPTAC3 977243c2-78c9-4409-ba05-1a11d89b52d6 b546600dc9ba21a85e161dce03332352 { 'aliquot_tag': 'DUP_af68ac6d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot' } +C208854.DUP_af68ac6d.miRNA-Seq.T.hg38 C208854 GBM miRNA-Seq tumor 7316UP-613-1104768 1ea38c56-1c4e-4b22-9384-c644f7f1107a_mirnaseq_gdc_realn.bam 370736800 BAM harmonized CPTAC3 b9141a66-07a2-43ba-911d-f233eadc77c6 f937d7d7814cd0d462091b1471adf7c8 { 'aliquot_tag': 'DUP_af68ac6d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot' } +C208854.DUP_af68ac6d.RNA-Seq.chimeric.T.hg38 C208854 GBM RNA-Seq tumor 7316UP-613-1104768 4b42ae00-7d74-4b51-894d-fcdd522805a9.rna_seq.chimeric.gdc_realn.bam 41387195 BAM chimeric harmonized CPTAC3 68cf86b4-f579-4b01-81f9-0c40f0b201d0 8b0bf8812debbf9d55af6c33dce4540e { 'aliquot_tag': 'DUP_af68ac6d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot' } +C208854.DUP_af68ac6d.RNA-Seq.genomic.T.hg38 C208854 GBM RNA-Seq tumor 7316UP-613-1104768 4b42ae00-7d74-4b51-894d-fcdd522805a9.rna_seq.genomic.gdc_realn.bam 8963599820 BAM genomic harmonized CPTAC3 4dcbea11-1c0b-4af5-991c-61daa3d739d7 de62feb74f4c0d811f1f405ecf573b50 { 'aliquot_tag': 'DUP_af68ac6d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot' } +C208854.DUP_af68ac6d.RNA-Seq.R1_L004.T C208854 GBM RNA-Seq tumor 7316UP-613-1104768 210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R1_001.fastq.gz 3590219283 FASTQ R1_L004 unaligned CPTAC3 182139b3-ba15-4e62-b4c8-572f6aa6937c d4b703f1ea765e87cf8d1b211b2aa324 { 'aliquot_tag': 'DUP_af68ac6d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot', 'read': 'R1', 'lane': 'L004' } +C208854.DUP_af68ac6d.RNA-Seq.R2_L004.T C208854 GBM RNA-Seq tumor 7316UP-613-1104768 210811_UNC31-K00269_0301_AHLLC5BBXY_AGGCAGAG-AGAATGCC_S13_L004_R2_001.fastq.gz 3900126651 FASTQ R2_L004 unaligned CPTAC3 977243c2-78c9-4409-ba05-1a11d89b52d6 b546600dc9ba21a85e161dce03332352 { 'aliquot_tag': 'DUP_af68ac6d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot', 'read': 'R2', 'lane': 'L004' } +C208854.DUP_af68ac6d.RNA-Seq.transcriptome.T.hg38 C208854 GBM RNA-Seq tumor 7316UP-613-1104768 4b42ae00-7d74-4b51-894d-fcdd522805a9.rna_seq.transcriptome.gdc_realn.bam 12833670943 BAM transcriptome harmonized CPTAC3 1e6a2353-ac07-41b8-a3e3-5d021c4f3e0c be387d3286327c25dc8d29a43ad133e1 { 'aliquot_tag': 'DUP_af68ac6d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor RNA Aliquot' } C208854.WGS.N C208854 GBM WGS blood_normal 7316UP-613-1105214 7316UP-613-1105214.WholeGenome.RP-2158.bam 50706461361 BAM aligned CPTAC3 72887f40-c864-4a38-943f-6bc9a23839c4 81fe6743c9a38180722f248082183268 { 'aliquot_tag': 'ALQ_57e8d30f', 'gdc_sample_type': 'Blood Derived Normal' } +C208854.WGS.N.hg38 C208854 GBM WGS blood_normal 7316UP-613-1105214 440c4098-c44d-412d-b0d1-217347a7a683_wgs_gdc_realn.bam 148979882282 BAM harmonized CPTAC3 27863cbe-e9e0-42ff-9e34-06102194bfdb 2e0d5552fd421494c582142a63ef433a { 'aliquot_tag': 'ALQ_57e8d30f', 'gdc_sample_type': 'Blood Derived Normal' } C208854.WGS.R C208854 GBM WGS recurrent_tumor 7316UP-979-1105201 7316UP-979-1105201.WholeGenome.RP-2158.bam 48370888424 BAM aligned CPTAC3 8bcc6a08-0ddb-4227-b24a-f7d23929dd3f 7324b544174e1cbf714dcf200ff57d05 { 'aliquot_tag': 'ALQ_355118de', 'gdc_sample_type': 'Recurrent Tumor' } +C208854.WGS.R.hg38 C208854 GBM WGS recurrent_tumor 7316UP-979-1105201 ed410371-455e-4995-ad53-4f8193379aff_wgs_gdc_realn.bam 137547923224 BAM harmonized CPTAC3 cf4ad53c-33ca-4a7e-9603-1e00fd5a5bf8 63f7489229bddfdc49c91bdf42463599 { 'aliquot_tag': 'ALQ_355118de', 'gdc_sample_type': 'Recurrent Tumor' } C208854.WGS.T C208854 GBM WGS tumor 7316UP-613-1105226 7316UP-613-1105226.WholeGenome.RP-2158.bam 46609557127 BAM aligned CPTAC3 fbecca03-1af4-4d30-8a2c-57d07c87feb4 f71dcb57813b35f8dbbaf134191ea679 { 'aliquot_tag': 'ALQ_92cbe1e0', 'gdc_sample_type': 'Primary Tumor' } +C208854.WGS.T.hg38 C208854 GBM WGS tumor 7316UP-613-1105226 39d0b9dc-ead3-409f-87fc-484fee59f592_wgs_gdc_realn.bam 135875851954 BAM harmonized CPTAC3 36aac09f-30e3-4464-a20e-33c90605fe83 044fa8f1136748bb5090c38121cec123 { 'aliquot_tag': 'ALQ_92cbe1e0', 'gdc_sample_type': 'Primary Tumor' } C208854.WXS.N C208854 GBM WXS blood_normal 7316UP-613-1105214 7316UP-613-1105214.WholeExome.RP-1303.bam 26660154490 BAM aligned CPTAC3 754d5b7a-f637-46e2-a5e7-e58d62a1b43e 975865c45dd70776e36e2ba7f66f7b6c { 'aliquot_tag': 'ALQ_57e8d30f', 'gdc_sample_type': 'Blood Derived Normal' } +C208854.WXS.N.hg38 C208854 GBM WXS blood_normal 7316UP-613-1105214 440c4098-c44d-412d-b0d1-217347a7a683_wxs_gdc_realn.bam 36329064168 BAM harmonized CPTAC3 58560d7d-dc88-405c-ac9c-7a5af669cbcc b7fda3172d1f7ce9a7d3c834d3c729f4 { 'aliquot_tag': 'ALQ_57e8d30f', 'gdc_sample_type': 'Blood Derived Normal' } C208854.WXS.R C208854 GBM WXS recurrent_tumor 7316UP-979-1105201 7316UP-979-1105201.WholeExome.RP-1303.bam 26993568783 BAM aligned CPTAC3 96bb342a-acb5-4474-9c48-b3e0274aec8c 2ba8d86df49e8f60212310530ec8996f { 'aliquot_tag': 'ALQ_355118de', 'gdc_sample_type': 'Recurrent Tumor' } +C208854.WXS.R.hg38 C208854 GBM WXS recurrent_tumor 7316UP-979-1105201 ed410371-455e-4995-ad53-4f8193379aff_wxs_gdc_realn.bam 36170830486 BAM harmonized CPTAC3 db570295-2e88-4c1b-8707-cb7a7845a333 ece46867e053f705c7a4090c01e7ee08 { 'aliquot_tag': 'ALQ_355118de', 'gdc_sample_type': 'Recurrent Tumor' } C208854.WXS.T C208854 GBM WXS tumor 7316UP-613-1105226 7316UP-613-1105226.WholeExome.RP-1303.bam 21215977915 BAM aligned CPTAC3 3b0a87eb-969e-45f3-bdda-a2cdf407801b c2060b256cbcfc2d14eb033e4f0d242a { 'aliquot_tag': 'ALQ_92cbe1e0', 'gdc_sample_type': 'Primary Tumor' } +C208854.WXS.T.hg38 C208854 GBM WXS tumor 7316UP-613-1105226 39d0b9dc-ead3-409f-87fc-484fee59f592_wxs_gdc_realn.bam 28593895334 BAM harmonized CPTAC3 20773aad-0e5f-4b6d-8542-6981c9bf31a9 ec3d2b0754bcf3be4ad2391336fc1e6f { 'aliquot_tag': 'ALQ_92cbe1e0', 'gdc_sample_type': 'Primary Tumor' } C217710.DUP_e91fb26d.MethArray.Green.T C217710 GBM Methylation Array tumor 7316UP-19 205828590001_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 548a5d6b-1bc0-4166-8778-d53f6df4d1c4 ec5e61e9d039ae0390ebec509f5a6ae4 { 'aliquot_tag': 'DUP_e91fb26d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C217710.DUP_e91fb26d.MethArray.Red.T C217710 GBM Methylation Array tumor 7316UP-19 205828590001_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 94bfa561-795f-4d14-89bb-010777414cc0 f74d110c0655caa899f0c2bcdd673487 { 'aliquot_tag': 'DUP_e91fb26d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C217710.DUP_e91fb26d.WGS.T C217710 GBM WGS tumor 7316UP-19 7316UP-19.WholeGenome.RP-2158.bam 52811565719 BAM aligned CPTAC3 63c71c95-7bf7-46cc-b049-5163af8dc1c6 ce37eebc60678844629443a0bde61899 { 'aliquot_tag': 'DUP_e91fb26d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C217710.DUP_e91fb26d.WGS.T.hg38 C217710 GBM WGS tumor 7316UP-19 cdfb6ee2-5d43-478c-8f60-80c3c5ef589e_wgs_gdc_realn.bam 156499832002 BAM harmonized CPTAC3 0c89d6fb-4969-4d9d-8d68-05a42e533868 909e9448f77fd07fcaaa733b011b1a6d { 'aliquot_tag': 'DUP_e91fb26d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C217710.DUP_e91fb26d.WXS.T C217710 GBM WXS tumor 7316UP-19 7316UP-19.WholeExome.RP-1303.bam 43873823632 BAM aligned CPTAC3 870d14bf-8aaf-494a-81fe-947dfa11787d 9d057509664a0689ef71657720d6ad12 { 'aliquot_tag': 'DUP_e91fb26d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C217710.DUP_e91fb26d.WXS.T.hg38 C217710 GBM WXS tumor 7316UP-19 cdfb6ee2-5d43-478c-8f60-80c3c5ef589e_wxs_gdc_realn.bam 60153137014 BAM harmonized CPTAC3 8bbd9c83-206a-4547-93fb-1dbc329c4128 91df9202899a6864590d162d20c1a3c2 { 'aliquot_tag': 'DUP_e91fb26d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C217710.MethArray.Green.R C217710 GBM Methylation Array recurrent_tumor 7316UP-1534 205707890105_R01C01_Grn.idat 13677915 IDAT Green NA CPTAC3 074ff276-a07e-43a9-8713-65dd020df158 9728aa6ab902b42e8b53e47ee538e75e { 'aliquot_tag': 'ALQ_6820544b', 'gdc_sample_type': 'Recurrent Tumor' } C217710.MethArray.Red.R C217710 GBM Methylation Array recurrent_tumor 7316UP-1534 205707890105_R01C01_Red.idat 13677915 IDAT Red NA CPTAC3 9093e6cd-83e4-474a-9031-b055f7d793ca fd622fa63dc80f4c8bfc1df7cf85220b { 'aliquot_tag': 'ALQ_6820544b', 'gdc_sample_type': 'Recurrent Tumor' } C217710.miRNA-Seq.T C217710 GBM miRNA-Seq tumor 7316UP-19-1104782 210817_UNC31-K00269_0302_AHLCTHBBXY_TACAGC_S34_L002_R1_001.unaln.bam 345645442 BAM unaligned CPTAC3 2790ed60-cbc8-45e5-9163-ef8019d37857 f1bd90e904143056332314d26e16da55 { 'aliquot_tag': 'ALQ_cd27e51d', 'gdc_sample_type': 'Primary Tumor' } -C217710.RNA-Seq.R1_L004.T C217710 GBM RNA-Seq tumor 7316UP-19-1104782 210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R1_001.fastq.gz 3640299302 FASTQ R1_L004 unaligned CPTAC3 4b6817fd-a951-4eb0-bdac-687b93cf4b88 504b6c07619eca6f9337027810fa773f { 'aliquot_tag': 'ALQ_cd27e51d', 'gdc_sample_type': 'Primary Tumor' } -C217710.RNA-Seq.R2_L004.T C217710 GBM RNA-Seq tumor 7316UP-19-1104782 210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R2_001.fastq.gz 3908136926 FASTQ R2_L004 unaligned CPTAC3 4650c90e-4e22-48a5-942f-48a9cd2b854d 7b1e22caaeebf8d40e741a37c00f7fa1 { 'aliquot_tag': 'ALQ_cd27e51d', 'gdc_sample_type': 'Primary Tumor' } +C217710.miRNA-Seq.T.hg38 C217710 GBM miRNA-Seq tumor 7316UP-19-1104782 6e87f138-74dd-46c7-915a-6ce609ca29a6_mirnaseq_gdc_realn.bam 396118233 BAM harmonized CPTAC3 746414a8-6c70-4dba-86a6-93bc3e699c0a ecf6caea7cac78566a2d41fba779d823 { 'aliquot_tag': 'ALQ_cd27e51d', 'gdc_sample_type': 'Primary Tumor' } +C217710.RNA-Seq.chimeric.T.hg38 C217710 GBM RNA-Seq tumor 7316UP-19-1104782 3ca0e4ec-2b04-42a6-9250-47de76be50e2.rna_seq.chimeric.gdc_realn.bam 61467451 BAM chimeric harmonized CPTAC3 82aaf8d3-749f-4ba4-9ebd-988daf8fbd8e 9698a626e612f984acc5b8096c4b0a2c { 'aliquot_tag': 'ALQ_cd27e51d', 'gdc_sample_type': 'Primary Tumor' } +C217710.RNA-Seq.genomic.T.hg38 C217710 GBM RNA-Seq tumor 7316UP-19-1104782 3ca0e4ec-2b04-42a6-9250-47de76be50e2.rna_seq.genomic.gdc_realn.bam 7636439461 BAM genomic harmonized CPTAC3 94288feb-dfc3-4639-98d5-effc4eb9920f dfac69da0fe353aa0992c1c813ef286b { 'aliquot_tag': 'ALQ_cd27e51d', 'gdc_sample_type': 'Primary Tumor' } +C217710.RNA-Seq.R1_L004.T C217710 GBM RNA-Seq tumor 7316UP-19-1104782 210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R1_001.fastq.gz 3640299302 FASTQ R1_L004 unaligned CPTAC3 4b6817fd-a951-4eb0-bdac-687b93cf4b88 504b6c07619eca6f9337027810fa773f { 'aliquot_tag': 'ALQ_cd27e51d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C217710.RNA-Seq.R2_L004.T C217710 GBM RNA-Seq tumor 7316UP-19-1104782 210713_UNC32-K00270_0291_AHLK5VBBXY_TAATACAG-ATATTCAC_S16_L004_R2_001.fastq.gz 3908136926 FASTQ R2_L004 unaligned CPTAC3 4650c90e-4e22-48a5-942f-48a9cd2b854d 7b1e22caaeebf8d40e741a37c00f7fa1 { 'aliquot_tag': 'ALQ_cd27e51d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C217710.RNA-Seq.transcriptome.T.hg38 C217710 GBM RNA-Seq tumor 7316UP-19-1104782 3ca0e4ec-2b04-42a6-9250-47de76be50e2.rna_seq.transcriptome.gdc_realn.bam 14787508544 BAM transcriptome harmonized CPTAC3 4f07515b-4fee-4733-a45a-a8a22e614394 e6b2c95083fbf84ff4be06db948ca955 { 'aliquot_tag': 'ALQ_cd27e51d', 'gdc_sample_type': 'Primary Tumor' } C217710.WGS.N C217710 GBM WGS blood_normal 7316UP-1534-1105276 7316UP-1534-1105276.WholeGenome.RP-2158.bam 42699047182 BAM aligned CPTAC3 3b672292-d46c-47d9-8a16-820be2a1df27 0904f3af943819db329520fd69fbd768 { 'aliquot_tag': 'ALQ_d5664ce3', 'gdc_sample_type': 'Blood Derived Normal' } +C217710.WGS.N.hg38 C217710 GBM WGS blood_normal 7316UP-1534-1105276 8bd03e60-c7e2-4f21-8618-3bbfbab14e0f_wgs_gdc_realn.bam 121781435218 BAM harmonized CPTAC3 8e4974c6-65c8-4808-ac4a-530f6da8f875 01ae5df8c4fdbaf429dd513672318bb8 { 'aliquot_tag': 'ALQ_d5664ce3', 'gdc_sample_type': 'Blood Derived Normal' } C217710.WGS.R C217710 GBM WGS recurrent_tumor 7316UP-1534 7316UP-1534.WholeGenome.RP-2158.bam 52402219420 BAM aligned CPTAC3 646c8302-ec6c-4ae5-a4d6-f52e2ca0d427 7fcdbcb20ae688519a12ecc36571ebef { 'aliquot_tag': 'ALQ_6820544b', 'gdc_sample_type': 'Recurrent Tumor' } +C217710.WGS.R.hg38 C217710 GBM WGS recurrent_tumor 7316UP-1534 6fb6d874-58c7-4ece-afce-575d4231a62e_wgs_gdc_realn.bam 157037230451 BAM harmonized CPTAC3 0b49269a-f716-4dda-8dd4-8c7fc370e9d1 353f71c7b68e2fb6fdfef394fa07b920 { 'aliquot_tag': 'ALQ_6820544b', 'gdc_sample_type': 'Recurrent Tumor' } C217710.WXS.N C217710 GBM WXS blood_normal 7316UP-1534-1105276 7316UP-1534-1105276.WholeExome.RP-1303.bam 28868330979 BAM aligned CPTAC3 4dd64fa5-6f9b-4fd5-90d7-d035a8671553 5675c85b2f625af9769b02a848ac62af { 'aliquot_tag': 'ALQ_d5664ce3', 'gdc_sample_type': 'Blood Derived Normal' } +C217710.WXS.N.hg38 C217710 GBM WXS blood_normal 7316UP-1534-1105276 8bd03e60-c7e2-4f21-8618-3bbfbab14e0f_wxs_gdc_realn.bam 39176044019 BAM harmonized CPTAC3 21d37f10-b599-4797-b425-f15427444632 eafb54a7a9f7d21b0dbca89d1cbc4066 { 'aliquot_tag': 'ALQ_d5664ce3', 'gdc_sample_type': 'Blood Derived Normal' } C217710.WXS.R C217710 GBM WXS recurrent_tumor 7316UP-1534 7316UP-1534.WholeExome.RP-1303.bam 25203950308 BAM aligned CPTAC3 566329d7-f198-4924-bf01-6cdd00d692a8 08e4d0b6e868277ba65d5c289c1f1fa6 { 'aliquot_tag': 'ALQ_6820544b', 'gdc_sample_type': 'Recurrent Tumor' } +C217710.WXS.R.hg38 C217710 GBM WXS recurrent_tumor 7316UP-1534 6fb6d874-58c7-4ece-afce-575d4231a62e_wxs_gdc_realn.bam 34120833987 BAM harmonized CPTAC3 419f929c-e711-431e-bb23-a3a84f54c9bf e52bbe777d993096e10d151447aff4d3 { 'aliquot_tag': 'ALQ_6820544b', 'gdc_sample_type': 'Recurrent Tumor' } C217710.WXS.T C217710 GBM WXS tumor 7316UP-19-1105245 7316UP-19-1105245.WholeExome.RP-1303.bam 22589791817 BAM aligned CPTAC3 87b51d25-9339-49ab-920f-ab8cecd367e5 ab4ce8b229b7648690e1887995435e07 { 'aliquot_tag': 'ALQ_41819a3c', 'gdc_sample_type': 'Primary Tumor' } +C217710.WXS.T.hg38 C217710 GBM WXS tumor 7316UP-19-1105245 49aea928-c7da-432e-aa39-ec92de5d9f00_wxs_gdc_realn.bam 30329595462 BAM harmonized CPTAC3 1d5ad431-811e-436c-8f11-dc1badb61be6 270bd4c6171cc57b31517e57572b1b3b { 'aliquot_tag': 'ALQ_41819a3c', 'gdc_sample_type': 'Primary Tumor' } C219555.DUP_3937258b.MethArray.Green.R C219555 GBM Methylation Array recurrent_tumor 7316UP-334 205707890073_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 8bc6c249-f73a-4625-8894-11c9596a944b 7dadbfb438a60b2b40584a2082214f59 { 'aliquot_tag': 'DUP_3937258b', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C219555.DUP_3937258b.MethArray.Red.R C219555 GBM Methylation Array recurrent_tumor 7316UP-334 205707890073_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 dd59ad96-eb19-422d-8076-b92099136c03 ad6ee965047fccdd0ce3950d68b50274 { 'aliquot_tag': 'DUP_3937258b', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C219555.DUP_3937258b.WGS.R C219555 GBM WGS recurrent_tumor 7316UP-334 7316UP-334.WholeGenome.RP-2158.bam 58828061146 BAM aligned CPTAC3 882cde8a-9ed0-4fcf-84c5-4e5717afd1a7 0a98c904b0bf15dfbc619670b4a420c4 { 'aliquot_tag': 'DUP_3937258b', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C219555.DUP_3937258b.WGS.R.hg38 C219555 GBM WGS recurrent_tumor 7316UP-334 dabfaa11-3cce-47d8-a945-c85d5c40a6a7_wgs_gdc_realn.bam 177402486286 BAM harmonized CPTAC3 8ae9de4a-75fa-4dfb-8c50-ff32c7cd8aa1 0d2596fd4a943e5e51af47a0d93fb81f { 'aliquot_tag': 'DUP_3937258b', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C219555.DUP_3937258b.WXS.R C219555 GBM WXS recurrent_tumor 7316UP-334 7316UP-334.WholeExome.RP-1303.bam 30187741761 BAM aligned CPTAC3 8672a141-dd74-4e0e-ab12-6ae1ea12d83a cbc3eb75d2d9d87e9bf45730d1dc655b { 'aliquot_tag': 'DUP_3937258b', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C219555.DUP_3937258b.WXS.R.hg38 C219555 GBM WXS recurrent_tumor 7316UP-334 dabfaa11-3cce-47d8-a945-c85d5c40a6a7_wxs_gdc_realn.bam 40425836799 BAM harmonized CPTAC3 f33c138f-4700-492b-a2ed-83c90af51614 65607677f1d267a17da977684ef77cc4 { 'aliquot_tag': 'DUP_3937258b', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C219555.DUP_d29f9cc4.MethArray.Green.T C219555 GBM Methylation Array tumor 7316UP-35 205854140144_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 0098bf4f-cf5e-40ea-a6e2-6fa1a85ab19b 5d3b53e33ad753c495fdd175ee0d3e94 { 'aliquot_tag': 'DUP_d29f9cc4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C219555.DUP_d29f9cc4.MethArray.Red.T C219555 GBM Methylation Array tumor 7316UP-35 205854140144_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a8b205bd-6ad7-40b0-8fb0-66bbe3041542 96cf5276b64dde5168bbf68a660b4141 { 'aliquot_tag': 'DUP_d29f9cc4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C219555.miRNA-Seq.R C219555 GBM miRNA-Seq recurrent_tumor 7316UP-334-1104785 220125_UNC32-K00270_0311_AHMNYYBBXY_CTATAC_S12_L002_R1_001.unaln.bam 231707571 BAM unaligned CPTAC3 edce9c26-b973-45a8-bf27-2ff3e76b3bd8 b2a68eae9357e9dfdb8c738d300137fe { 'aliquot_tag': 'ALQ_5e99ece8', 'gdc_sample_type': 'Recurrent Tumor' } -C219555.RNA-Seq.R1_L006.R C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R1_001.fastq.gz 4651016359 FASTQ R1_L006 unaligned CPTAC3 ddde0a66-c5c5-4aa0-8021-f4c5039e1adf c51ff4e283343f5e95d6e196be14f6e2 { 'aliquot_tag': 'ALQ_5e99ece8', 'gdc_sample_type': 'Recurrent Tumor' } -C219555.RNA-Seq.R2_L006.R C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R2_001.fastq.gz 5060489472 FASTQ R2_L006 unaligned CPTAC3 1871abee-0aa8-4766-b001-d9c3b0c8ff27 ce12fe866e58d02be49343030d28825e { 'aliquot_tag': 'ALQ_5e99ece8', 'gdc_sample_type': 'Recurrent Tumor' } +C219555.miRNA-Seq.R.hg38 C219555 GBM miRNA-Seq recurrent_tumor 7316UP-334-1104785 005136d4-8e1f-46b0-ba15-fb85ac76ce9a_mirnaseq_gdc_realn.bam 270599952 BAM harmonized CPTAC3 54f0a5f9-245f-43ed-9b41-c95021fe3e4b f9c8cfde1fa303d3004fe9a27390c509 { 'aliquot_tag': 'ALQ_5e99ece8', 'gdc_sample_type': 'Recurrent Tumor' } +C219555.RNA-Seq.chimeric.R.hg38 C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 c21f6eeb-e014-4a5e-90fd-930e6225e693.rna_seq.chimeric.gdc_realn.bam 163579955 BAM chimeric harmonized CPTAC3 3fc385bf-967b-4874-9a94-c564719270b7 cf3e156c005262f1c5984f50120e0b48 { 'aliquot_tag': 'ALQ_5e99ece8', 'gdc_sample_type': 'Recurrent Tumor' } +C219555.RNA-Seq.genomic.R.hg38 C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 c21f6eeb-e014-4a5e-90fd-930e6225e693.rna_seq.genomic.gdc_realn.bam 10356729173 BAM genomic harmonized CPTAC3 247c5814-1fd5-4768-b249-75e4f069dbfd 0ca0134bae7a3031a97043505ed2bab9 { 'aliquot_tag': 'ALQ_5e99ece8', 'gdc_sample_type': 'Recurrent Tumor' } +C219555.RNA-Seq.R1_L006.R C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R1_001.fastq.gz 4651016359 FASTQ R1_L006 unaligned CPTAC3 ddde0a66-c5c5-4aa0-8021-f4c5039e1adf c51ff4e283343f5e95d6e196be14f6e2 { 'aliquot_tag': 'ALQ_5e99ece8', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L006' } +C219555.RNA-Seq.R2_L006.R C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 210811_UNC31-K00269_0301_AHLLC5BBXY_TAAGGTCA-TGTCGTAG_S23_L006_R2_001.fastq.gz 5060489472 FASTQ R2_L006 unaligned CPTAC3 1871abee-0aa8-4766-b001-d9c3b0c8ff27 ce12fe866e58d02be49343030d28825e { 'aliquot_tag': 'ALQ_5e99ece8', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L006' } +C219555.RNA-Seq.transcriptome.R.hg38 C219555 GBM RNA-Seq recurrent_tumor 7316UP-334-1104785 c21f6eeb-e014-4a5e-90fd-930e6225e693.rna_seq.transcriptome.gdc_realn.bam 17756769933 BAM transcriptome harmonized CPTAC3 d9bc6712-c73c-49c9-9fd2-bb7a9ce5c333 51a4d96f7e7e86169fe619887514cdfe { 'aliquot_tag': 'ALQ_5e99ece8', 'gdc_sample_type': 'Recurrent Tumor' } C219555.WGS.N C219555 GBM WGS blood_normal 7316UP-334-1105285 7316UP-334-1105285.WholeGenome.RP-2158.bam 68621543980 BAM aligned CPTAC3 8ab71475-b793-47d1-b19b-ed65b1ddd041 3c5c94a59bd9e5fd10c4de71fde732af { 'aliquot_tag': 'ALQ_e0ee4966', 'gdc_sample_type': 'Blood Derived Normal' } +C219555.WGS.N.hg38 C219555 GBM WGS blood_normal 7316UP-334-1105285 244e6c1e-b17a-4bec-ac27-4a2765b149f7_wgs_gdc_realn.bam 206388670880 BAM harmonized CPTAC3 d2a01326-0fde-420b-8a11-23df57892a50 ed25c32d9211835f48ea1ec01ee01fbb { 'aliquot_tag': 'ALQ_e0ee4966', 'gdc_sample_type': 'Blood Derived Normal' } C219555.WGS.R C219555 GBM WGS recurrent_tumor 7316UP-334-1105248 7316UP-334-1105248.WholeGenome.RP-2158.bam 71429152493 BAM aligned CPTAC3 8f0e725e-7d31-48ac-8a04-c1526e8edeac 2e28d375752ba773f7d62ac1539ac13e { 'aliquot_tag': 'ALQ_32ea7ad7', 'gdc_sample_type': 'Recurrent Tumor' } +C219555.WGS.R.hg38 C219555 GBM WGS recurrent_tumor 7316UP-334-1105248 2fd672f1-2ae2-4ad7-832c-343cf9c0dc72_wgs_gdc_realn.bam 213545190846 BAM harmonized CPTAC3 873d00c3-e72a-4710-8cf7-728864c2eb28 0bd5563fb3823547caf37dda43ccc1a8 { 'aliquot_tag': 'ALQ_32ea7ad7', 'gdc_sample_type': 'Recurrent Tumor' } C219555.WGS.T C219555 GBM WGS tumor 7316UP-35-1105259 7316UP-35-1105259.WholeGenome.RP-2158.bam 51612850770 BAM aligned CPTAC3 919b5f49-39de-41bb-abd9-6c04952e500d 67b88addfe5a45e13daa454928d625bc { 'aliquot_tag': 'ALQ_b3edc47f', 'gdc_sample_type': 'Primary Tumor' } +C219555.WGS.T.hg38 C219555 GBM WGS tumor 7316UP-35-1105259 b8cc75d6-b8c2-4e04-8808-9c99797b2115_wgs_gdc_realn.bam 154831970957 BAM harmonized CPTAC3 6715f699-6a80-427d-b2c8-07a09f0682ca 1d4a6fefb3649c8e0e840fef1b6de1a6 { 'aliquot_tag': 'ALQ_b3edc47f', 'gdc_sample_type': 'Primary Tumor' } C219555.WXS.N C219555 GBM WXS blood_normal 7316UP-334-1105285 7316UP-334-1105285.WholeExome.RP-1303.bam 32358444473 BAM aligned CPTAC3 a05ce773-9b47-43c5-a3b7-95f94c23e6a3 8cab5397421be7e2824cf4eb16f92b5c { 'aliquot_tag': 'ALQ_e0ee4966', 'gdc_sample_type': 'Blood Derived Normal' } +C219555.WXS.N.hg38 C219555 GBM WXS blood_normal 7316UP-334-1105285 244e6c1e-b17a-4bec-ac27-4a2765b149f7_wxs_gdc_realn.bam 43938591482 BAM harmonized CPTAC3 6c88f523-a5c3-411d-9915-73415a0c6c10 d69eb0b38e756f5104da619d4d9df56d { 'aliquot_tag': 'ALQ_e0ee4966', 'gdc_sample_type': 'Blood Derived Normal' } C219555.WXS.R C219555 GBM WXS recurrent_tumor 7316UP-334-1105248 7316UP-334-1105248.WholeExome.RP-1303.bam 25559525369 BAM aligned CPTAC3 7fbb52ea-e534-4842-a4e4-b732b66a7606 3bf6f503087985b2f93ea61f74a52a6b { 'aliquot_tag': 'ALQ_32ea7ad7', 'gdc_sample_type': 'Recurrent Tumor' } +C219555.WXS.R.hg38 C219555 GBM WXS recurrent_tumor 7316UP-334-1105248 2fd672f1-2ae2-4ad7-832c-343cf9c0dc72_wxs_gdc_realn.bam 35015525938 BAM harmonized CPTAC3 e12410da-6165-46b0-bde6-6da7de7906f7 6fdf76109958da2814c41bf8f8195cd9 { 'aliquot_tag': 'ALQ_32ea7ad7', 'gdc_sample_type': 'Recurrent Tumor' } C219555.WXS.T C219555 GBM WXS tumor 7316UP-35-1105259 7316UP-35-1105259.WholeExome.RP-1303.bam 23960204308 BAM aligned CPTAC3 869a1730-a19a-4fc9-98e7-077f14452b5b 99852b1ff85731f9126c5411f8a8aed5 { 'aliquot_tag': 'ALQ_b3edc47f', 'gdc_sample_type': 'Primary Tumor' } +C219555.WXS.T.hg38 C219555 GBM WXS tumor 7316UP-35-1105259 b8cc75d6-b8c2-4e04-8808-9c99797b2115_wxs_gdc_realn.bam 33230013329 BAM harmonized CPTAC3 1d6f28a8-c2fe-4259-b1ed-b59d4b65d934 d43238f7cbb4c60e1360c31503ea396c { 'aliquot_tag': 'ALQ_b3edc47f', 'gdc_sample_type': 'Primary Tumor' } C223491.DUP_41e87f66.MethArray.Green.R C223491 GBM Methylation Array recurrent_tumor 7316UP-483 205705520154_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9d9ff60a-1502-4e8c-a193-7bddf0ab3bbd aa971c7175a9c1163d0b4de7585e31c7 { 'aliquot_tag': 'DUP_41e87f66', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C223491.DUP_41e87f66.MethArray.Red.R C223491 GBM Methylation Array recurrent_tumor 7316UP-483 205705520154_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 323b52cf-9e89-460c-9375-cb6f575b87f9 6eb0da419d54fecc35102fedd5ff85c6 { 'aliquot_tag': 'DUP_41e87f66', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C223491.DUP_41e87f66.WGS.R C223491 GBM WGS recurrent_tumor 7316UP-483 7316UP-483.WholeGenome.RP-2158.bam 48571709354 BAM aligned CPTAC3 b737472a-27fd-4458-81e1-b6951939289b 76c548d4af0f2e32f325ada5f4d79d88 { 'aliquot_tag': 'DUP_41e87f66', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C223491.DUP_41e87f66.WGS.R.hg38 C223491 GBM WGS recurrent_tumor 7316UP-483 522b9088-599b-4b9f-8508-bf4e7c39e09d_wgs_gdc_realn.bam 146855438705 BAM harmonized CPTAC3 53f52c5e-9e16-4b4f-80bb-d5cf3488bb7f 09b2565ff51feabc40a05315729ce04c { 'aliquot_tag': 'DUP_41e87f66', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C223491.DUP_41e87f66.WXS.R C223491 GBM WXS recurrent_tumor 7316UP-483 7316UP-483.WholeExome.RP-1303.bam 30751621621 BAM aligned CPTAC3 8fb10564-d2e3-409b-9a06-042169259b88 9c43dda87e49a102bab58208a5a39247 { 'aliquot_tag': 'DUP_41e87f66', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C223491.DUP_41e87f66.WXS.R.hg38 C223491 GBM WXS recurrent_tumor 7316UP-483 522b9088-599b-4b9f-8508-bf4e7c39e09d_wxs_gdc_realn.bam 41630615778 BAM harmonized CPTAC3 beb5a8d2-4ca2-4beb-90d3-68bff12b16ce d2631a4c8a5f2add80eac93d4e54085e { 'aliquot_tag': 'DUP_41e87f66', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C223491.miRNA-Seq.R C223491 GBM miRNA-Seq recurrent_tumor 7316UP-483-1104812 210817_UNC31-K00269_0302_AHLCTHBBXY_ACTGAT_S43_L003_R1_001.unaln.bam 361925118 BAM unaligned CPTAC3 eaef7f8f-75b6-4467-b88e-0e5422639d63 081c88f5d0f73a5611bfa0d07d85c323 { 'aliquot_tag': 'ALQ_afd90682', 'gdc_sample_type': 'Recurrent Tumor' } -C223491.RNA-Seq.R1_L005.R C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R1_001.fastq.gz 4037245471 FASTQ R1_L005 unaligned CPTAC3 1c436956-9492-4126-8ed6-160d0909e49e 9ffa94c73af728fd8eb0ebd074099352 { 'aliquot_tag': 'ALQ_afd90682', 'gdc_sample_type': 'Recurrent Tumor' } -C223491.RNA-Seq.R2_L005.R C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R2_001.fastq.gz 4283501940 FASTQ R2_L005 unaligned CPTAC3 a46bf346-0896-46e7-a3c2-ca63e1e137a0 bfa5879e591fba0a64a7405513531247 { 'aliquot_tag': 'ALQ_afd90682', 'gdc_sample_type': 'Recurrent Tumor' } +C223491.miRNA-Seq.R.hg38 C223491 GBM miRNA-Seq recurrent_tumor 7316UP-483-1104812 aa2e8ef0-daae-48d4-9c37-59a4963dbff7_mirnaseq_gdc_realn.bam 403474199 BAM harmonized CPTAC3 72fc4bc7-6e69-4845-b074-95c067fa8275 52b9db6072480bcfeb009a1030999025 { 'aliquot_tag': 'ALQ_afd90682', 'gdc_sample_type': 'Recurrent Tumor' } +C223491.RNA-Seq.chimeric.R.hg38 C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 76dea8e4-38ae-4c50-85a0-00f161cc3793.rna_seq.chimeric.gdc_realn.bam 36655213 BAM chimeric harmonized CPTAC3 499e0d3c-b835-473b-83d0-17875ce1fc6f 8d8971605bd70b7787854631d4287455 { 'aliquot_tag': 'ALQ_afd90682', 'gdc_sample_type': 'Recurrent Tumor' } +C223491.RNA-Seq.genomic.R.hg38 C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 76dea8e4-38ae-4c50-85a0-00f161cc3793.rna_seq.genomic.gdc_realn.bam 11405701389 BAM genomic harmonized CPTAC3 9df33640-601a-45cc-8889-20e6a483224f 269513a67aadc54bd11d677cd104a4e7 { 'aliquot_tag': 'ALQ_afd90682', 'gdc_sample_type': 'Recurrent Tumor' } +C223491.RNA-Seq.R1_L005.R C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R1_001.fastq.gz 4037245471 FASTQ R1_L005 unaligned CPTAC3 1c436956-9492-4126-8ed6-160d0909e49e 9ffa94c73af728fd8eb0ebd074099352 { 'aliquot_tag': 'ALQ_afd90682', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L005' } +C223491.RNA-Seq.R2_L005.R C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 210713_UNC32-K00270_0291_AHLK5VBBXY_TGGATCGA-GTGCGATA_S19_L005_R2_001.fastq.gz 4283501940 FASTQ R2_L005 unaligned CPTAC3 a46bf346-0896-46e7-a3c2-ca63e1e137a0 bfa5879e591fba0a64a7405513531247 { 'aliquot_tag': 'ALQ_afd90682', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L005' } +C223491.RNA-Seq.transcriptome.R.hg38 C223491 GBM RNA-Seq recurrent_tumor 7316UP-483-1104812 76dea8e4-38ae-4c50-85a0-00f161cc3793.rna_seq.transcriptome.gdc_realn.bam 17383707923 BAM transcriptome harmonized CPTAC3 535d00cf-915f-415e-a3a6-589456b31e1c bd761465cec00429ac5150c16189c2e4 { 'aliquot_tag': 'ALQ_afd90682', 'gdc_sample_type': 'Recurrent Tumor' } C223491.WGS.R C223491 GBM WGS recurrent_tumor 7316UP-483-1105191 7316UP-483-1105191.WholeGenome.RP-2158.bam 52692734505 BAM aligned CPTAC3 7fc1bd1b-2147-44ed-91d9-cf53b966f700 8841250ca3857d6c82ddd15f240e9209 { 'aliquot_tag': 'ALQ_496481da', 'gdc_sample_type': 'Recurrent Tumor' } +C223491.WGS.R.hg38 C223491 GBM WGS recurrent_tumor 7316UP-483-1105191 d235c25d-bb95-4dc9-a1b3-128f850fd737_wgs_gdc_realn.bam 158218502480 BAM harmonized CPTAC3 3618f1c0-bc30-4f7e-ae8c-b3e91d478cec d27dcd351a7166a98b261ca3a12319a0 { 'aliquot_tag': 'ALQ_496481da', 'gdc_sample_type': 'Recurrent Tumor' } C223491.WGS.T C223491 GBM WGS tumor 7316UP-99 7316UP-99.WholeGenome.RP-2158.bam 49865930928 BAM aligned CPTAC3 cf5efe80-b78b-452d-8f15-b60678ac0fa8 f6ed1c9218fbcd62dae4e622cf245062 { 'aliquot_tag': 'ALQ_21c63865', 'gdc_sample_type': 'Primary Tumor' } +C223491.WGS.T.hg38 C223491 GBM WGS tumor 7316UP-99 7980012c-6c74-4d70-8946-86a3479417c0_wgs_gdc_realn.bam 432727220691 BAM harmonized CPTAC3 412e0e3f-8c87-4641-9204-126bc09e68ac f93c506e1db1d708fe3ffcdc4e57cb22 { 'aliquot_tag': 'ALQ_21c63865', 'gdc_sample_type': 'Primary Tumor' } C223491.WXS.N C223491 GBM WXS blood_normal 7316UP-483-1105289 7316UP-483-1105289.WholeExome.RP-1303.bam 20512771626 BAM aligned CPTAC3 367f70e0-fa2a-4680-bc61-984611e74928 7932b754fb2c0bd80ccc9a514dd6f8ab { 'aliquot_tag': 'ALQ_5ce286f0', 'gdc_sample_type': 'Blood Derived Normal' } +C223491.WXS.N.hg38 C223491 GBM WXS blood_normal 7316UP-483-1105289 49dcce64-3419-4987-952e-55d7cbd236e4_wxs_gdc_realn.bam 28176936824 BAM harmonized CPTAC3 6930c8e7-67ee-4f60-9feb-a4ea5410ffb7 387507faa86e14be753f0b81241db44d { 'aliquot_tag': 'ALQ_5ce286f0', 'gdc_sample_type': 'Blood Derived Normal' } C223491.WXS.R C223491 GBM WXS recurrent_tumor 7316UP-483-1105191 7316UP-483-1105191.WholeExome.RP-1303.bam 15164145344 BAM aligned CPTAC3 fd8663d4-c762-4db2-b8a0-031382dc3666 20dee35180874ce7ded6069ea7c7aeba { 'aliquot_tag': 'ALQ_496481da', 'gdc_sample_type': 'Recurrent Tumor' } +C223491.WXS.R.hg38 C223491 GBM WXS recurrent_tumor 7316UP-483-1105191 d235c25d-bb95-4dc9-a1b3-128f850fd737_wxs_gdc_realn.bam 20687623019 BAM harmonized CPTAC3 48495898-8b43-46dc-8dd4-da3253772b14 1ca886c2e3e1df682089cae43f0a453c { 'aliquot_tag': 'ALQ_496481da', 'gdc_sample_type': 'Recurrent Tumor' } C224106.DUP_4208c7cd.WGS.T C224106 GBM WGS tumor 7316UP-287 7316UP-287.WholeGenome.RP-2158.bam 57941003136 BAM aligned CPTAC3 14a6ce1c-24ce-4888-bbac-7115538ed5fa 99d73dc54dd42710a392b852d8f89a9b { 'aliquot_tag': 'DUP_4208c7cd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C224106.DUP_4208c7cd.WGS.T.hg38 C224106 GBM WGS tumor 7316UP-287 03758b31-f5e1-4bea-8001-a5147945dafa_wgs_gdc_realn.bam 169657009041 BAM harmonized CPTAC3 0c382407-5002-43eb-832a-57e8a14d039e 46d02d8f3e011c06c608fa192a5c7789 { 'aliquot_tag': 'DUP_4208c7cd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C224106.DUP_4208c7cd.WXS.T C224106 GBM WXS tumor 7316UP-287 7316UP-287.WholeExome.RP-1303.bam 26187586378 BAM aligned CPTAC3 4e2edbeb-e029-4333-9431-a9d342ee7bff 533b74a6248fe294c445c8a905a140cf { 'aliquot_tag': 'DUP_4208c7cd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C224106.DUP_4208c7cd.WXS.T.hg38 C224106 GBM WXS tumor 7316UP-287 03758b31-f5e1-4bea-8001-a5147945dafa_wxs_gdc_realn.bam 35883300355 BAM harmonized CPTAC3 68b960fe-389d-45f1-a5b1-4500a8670c48 8779d986550dac51903c0c6d53991808 { 'aliquot_tag': 'DUP_4208c7cd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C224106.DUP_b88a1276.MethArray.Green.R C224106 GBM Methylation Array recurrent_tumor 7316UP-895 205555380005_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ee637352-7622-4e78-8f49-4cb6f331c81d 80dec5d35eebcaa1deb4e5bb7606bd47 { 'aliquot_tag': 'DUP_b88a1276', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C224106.DUP_b88a1276.MethArray.Red.R C224106 GBM Methylation Array recurrent_tumor 7316UP-895 205555380005_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 d9924715-fa6d-4c08-b850-4512b5933c34 b995417ecc9afd4ecd1c21cdb1c9b668 { 'aliquot_tag': 'DUP_b88a1276', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C224106.DUP_b88a1276.WGS.R C224106 GBM WGS recurrent_tumor 7316UP-895 7316UP-895.WholeGenome.RP-2158.bam 56580658686 BAM aligned CPTAC3 bff5850e-413d-4144-9d2a-d86b489b09d5 b195758db70019dabe68ab3f3df6934a { 'aliquot_tag': 'DUP_b88a1276', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C224106.DUP_b88a1276.WGS.R.hg38 C224106 GBM WGS recurrent_tumor 7316UP-895 cad5e2fe-1eac-4c95-9778-6936f202f45f_wgs_gdc_realn.bam 166463595508 BAM harmonized CPTAC3 2eea8e90-93af-4c4b-b5c5-dc7d0df38c79 0ec20d1521963c813506924172ab5972 { 'aliquot_tag': 'DUP_b88a1276', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C224106.DUP_b88a1276.WXS.R C224106 GBM WXS recurrent_tumor 7316UP-895 7316UP-895.WholeExome.RP-1303.bam 31935073467 BAM aligned CPTAC3 fad3c698-2343-44c6-964a-bc3ef345becc 10954a95e1303d746ae1dd550acf104b { 'aliquot_tag': 'DUP_b88a1276', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C224106.DUP_b88a1276.WXS.R.hg38 C224106 GBM WXS recurrent_tumor 7316UP-895 cad5e2fe-1eac-4c95-9778-6936f202f45f_wxs_gdc_realn.bam 43570399546 BAM harmonized CPTAC3 fac107b0-84b9-43d3-9b61-b427d765c21e 2f1d414544357541c339f38282346855 { 'aliquot_tag': 'DUP_b88a1276', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C224106.miRNA-Seq.R C224106 GBM miRNA-Seq recurrent_tumor 7316UP-895-1104770 210817_UNC31-K00269_0302_AHLCTHBBXY_CACGAT_S6_L001_R1_001.unaln.bam 427802412 BAM unaligned CPTAC3 295ba69a-2716-4ae2-b09e-198a6b014b76 5ecf4f1b00db068f403e38a85d3eb67a { 'aliquot_tag': 'ALQ_8a130766', 'gdc_sample_type': 'Recurrent Tumor' } +C224106.miRNA-Seq.R.hg38 C224106 GBM miRNA-Seq recurrent_tumor 7316UP-895-1104770 10425193-5847-4cf7-a5ca-17100f107991_mirnaseq_gdc_realn.bam 480265592 BAM harmonized CPTAC3 460a3629-f722-4776-85dc-1869bf024432 28fb3354a3fa3b29081f8b52c82a1424 { 'aliquot_tag': 'ALQ_8a130766', 'gdc_sample_type': 'Recurrent Tumor' } C224106.miRNA-Seq.T C224106 GBM miRNA-Seq tumor 7316UP-287-1104813 210817_UNC31-K00269_0302_AHLCTHBBXY_ATGAGC_S1_L003_R1_001.unaln.bam 256591520 BAM unaligned CPTAC3 943ff38d-a88f-4765-9d04-c8c525f3bfdd d6fd5d6e4dcf39d72fb4b256220a770f { 'aliquot_tag': 'ALQ_6d87ad5b', 'gdc_sample_type': 'Primary Tumor' } -C224106.RNA-Seq.R1_L001.R C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R1_001.fastq.gz 4455928117 FASTQ R1_L001 unaligned CPTAC3 c5dcc7b5-5fe5-4ba1-80e0-0522e3b2c45e 513da73b88e9f6b073b04630e292ccfc { 'aliquot_tag': 'ALQ_8a130766', 'gdc_sample_type': 'Recurrent Tumor' } -C224106.RNA-Seq.R1_L005.T C224106 GBM RNA-Seq tumor 7316UP-287-1104813 210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R1_001.fastq.gz 4345500965 FASTQ R1_L005 unaligned CPTAC3 286d824a-e222-4b66-a50f-83ba2dfb89f4 3f69ffb8ffe4ff268f2bdff3e571eef2 { 'aliquot_tag': 'ALQ_6d87ad5b', 'gdc_sample_type': 'Primary Tumor' } -C224106.RNA-Seq.R2_L001.R C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R2_001.fastq.gz 5140415733 FASTQ R2_L001 unaligned CPTAC3 6dddfa45-9731-416b-b47f-be884511bc5b 595bdff955d047f1f467300fc23eb2ea { 'aliquot_tag': 'ALQ_8a130766', 'gdc_sample_type': 'Recurrent Tumor' } -C224106.RNA-Seq.R2_L005.T C224106 GBM RNA-Seq tumor 7316UP-287-1104813 210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R2_001.fastq.gz 4825520697 FASTQ R2_L005 unaligned CPTAC3 1f9ffd59-cfe7-4040-9d6a-68c01075fe7a ab1d7f7d4fdac2ccb0a2153afc3699d1 { 'aliquot_tag': 'ALQ_6d87ad5b', 'gdc_sample_type': 'Primary Tumor' } +C224106.miRNA-Seq.T.hg38 C224106 GBM miRNA-Seq tumor 7316UP-287-1104813 95379e20-dd9e-495e-be1c-ea43f37a3966_mirnaseq_gdc_realn.bam 285805780 BAM harmonized CPTAC3 f36ab729-410a-49cc-97b9-cf6b3b4bc706 08494ef2977d8fa82bde8cbd8ccbdb2c { 'aliquot_tag': 'ALQ_6d87ad5b', 'gdc_sample_type': 'Primary Tumor' } +C224106.RNA-Seq.chimeric.R.hg38 C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 903c0f4f-afe7-4fde-ab65-6622de9ce76c.rna_seq.chimeric.gdc_realn.bam 82318793 BAM chimeric harmonized CPTAC3 8645fca5-9ceb-4d95-9f1f-1a5ade5e8725 8117bd6d73b80010fb48210bfc98e3fb { 'aliquot_tag': 'ALQ_8a130766', 'gdc_sample_type': 'Recurrent Tumor' } +C224106.RNA-Seq.chimeric.T.hg38 C224106 GBM RNA-Seq tumor 7316UP-287-1104813 bb77a730-1483-4764-906c-b67a65cd5398.rna_seq.chimeric.gdc_realn.bam 107879322 BAM chimeric harmonized CPTAC3 5cb73372-7217-4891-87c0-ad66e130ffc0 6a90be9bd1bdd8da16eb604beddaa434 { 'aliquot_tag': 'ALQ_6d87ad5b', 'gdc_sample_type': 'Primary Tumor' } +C224106.RNA-Seq.genomic.R.hg38 C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 903c0f4f-afe7-4fde-ab65-6622de9ce76c.rna_seq.genomic.gdc_realn.bam 11315891908 BAM genomic harmonized CPTAC3 2ae0fcc0-fe9d-4c71-a3e8-b8062afe1710 c0cb175bbd9b33c9677e3b5c69b293c4 { 'aliquot_tag': 'ALQ_8a130766', 'gdc_sample_type': 'Recurrent Tumor' } +C224106.RNA-Seq.genomic.T.hg38 C224106 GBM RNA-Seq tumor 7316UP-287-1104813 bb77a730-1483-4764-906c-b67a65cd5398.rna_seq.genomic.gdc_realn.bam 9924215225 BAM genomic harmonized CPTAC3 d99f2d51-7f71-4145-bf9a-bd028efe6e6b 974b875a1479a3ed3fa56a3b60d6c24a { 'aliquot_tag': 'ALQ_6d87ad5b', 'gdc_sample_type': 'Primary Tumor' } +C224106.RNA-Seq.R1_L001.R C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R1_001.fastq.gz 4455928117 FASTQ R1_L001 unaligned CPTAC3 c5dcc7b5-5fe5-4ba1-80e0-0522e3b2c45e 513da73b88e9f6b073b04630e292ccfc { 'aliquot_tag': 'ALQ_8a130766', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L001' } +C224106.RNA-Seq.R1_L005.T C224106 GBM RNA-Seq tumor 7316UP-287-1104813 210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R1_001.fastq.gz 4345500965 FASTQ R1_L005 unaligned CPTAC3 286d824a-e222-4b66-a50f-83ba2dfb89f4 3f69ffb8ffe4ff268f2bdff3e571eef2 { 'aliquot_tag': 'ALQ_6d87ad5b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C224106.RNA-Seq.R2_L001.R C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 210811_UNC31-K00269_0301_AHLLC5BBXY_AAGATACT-ACTTACAT_S1_L001_R2_001.fastq.gz 5140415733 FASTQ R2_L001 unaligned CPTAC3 6dddfa45-9731-416b-b47f-be884511bc5b 595bdff955d047f1f467300fc23eb2ea { 'aliquot_tag': 'ALQ_8a130766', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L001' } +C224106.RNA-Seq.R2_L005.T C224106 GBM RNA-Seq tumor 7316UP-287-1104813 210811_UNC31-K00269_0301_AHLLC5BBXY_TGCGGCGT-CCTCGGTA_S20_L005_R2_001.fastq.gz 4825520697 FASTQ R2_L005 unaligned CPTAC3 1f9ffd59-cfe7-4040-9d6a-68c01075fe7a ab1d7f7d4fdac2ccb0a2153afc3699d1 { 'aliquot_tag': 'ALQ_6d87ad5b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C224106.RNA-Seq.transcriptome.R.hg38 C224106 GBM RNA-Seq recurrent_tumor 7316UP-895-1104770 903c0f4f-afe7-4fde-ab65-6622de9ce76c.rna_seq.transcriptome.gdc_realn.bam 14515844936 BAM transcriptome harmonized CPTAC3 506bbf6b-7e4f-48a7-b0be-6d6014dd591a c322cf33e0acac48ec8b13b529d511f6 { 'aliquot_tag': 'ALQ_8a130766', 'gdc_sample_type': 'Recurrent Tumor' } +C224106.RNA-Seq.transcriptome.T.hg38 C224106 GBM RNA-Seq tumor 7316UP-287-1104813 bb77a730-1483-4764-906c-b67a65cd5398.rna_seq.transcriptome.gdc_realn.bam 19283757877 BAM transcriptome harmonized CPTAC3 48880a9f-0675-4e53-86d4-ae4c66b78062 c07dc7bbed242b2c10734d5e225fd511 { 'aliquot_tag': 'ALQ_6d87ad5b', 'gdc_sample_type': 'Primary Tumor' } C224106.WGS.N C224106 GBM WGS blood_normal 7316UP-287-1105215 7316UP-287-1105215.WholeGenome.RP-2158.bam 60059311186 BAM aligned CPTAC3 e16365a8-367a-4945-a052-9125915293c1 4dee19ced6e06c643291f05488cf14f8 { 'aliquot_tag': 'ALQ_31cfeadd', 'gdc_sample_type': 'Blood Derived Normal' } +C224106.WGS.N.hg38 C224106 GBM WGS blood_normal 7316UP-287-1105215 e7e95603-5344-4c1c-9521-c6170cd21afc_wgs_gdc_realn.bam 177393500318 BAM harmonized CPTAC3 27b129be-59e4-45b6-a760-37f62e4febe4 c557a9f2c0ff0e3e212174075315ca94 { 'aliquot_tag': 'ALQ_31cfeadd', 'gdc_sample_type': 'Blood Derived Normal' } C224106.WGS.R C224106 GBM WGS recurrent_tumor 7316UP-895-1105233 7316UP-895-1105233.WholeGenome.RP-2158.bam 65179748190 BAM aligned CPTAC3 ca7f9da0-0679-4be0-933f-f117d49d5089 b6ef7970c6c47d5b27832b599cce0fc3 { 'aliquot_tag': 'ALQ_c9013656', 'gdc_sample_type': 'Recurrent Tumor' } +C224106.WGS.R.hg38 C224106 GBM WGS recurrent_tumor 7316UP-895-1105233 3a5851ea-4c01-4e59-9b77-648f9049b8f5_wgs_gdc_realn.bam 190836116792 BAM harmonized CPTAC3 48289e74-5ce6-4ae3-879b-2e43605f75a8 b4776e0e7a1926310180c3859d1defc8 { 'aliquot_tag': 'ALQ_c9013656', 'gdc_sample_type': 'Recurrent Tumor' } C224106.WGS.T C224106 GBM WGS tumor 7316UP-287-1105192 7316UP-287-1105192.WholeGenome.RP-2158.bam 49517781076 BAM aligned CPTAC3 fa03d5a2-d2cc-4688-bf42-61bec824f21c 050897226624b750777a305bdb623838 { 'aliquot_tag': 'ALQ_65344b2f', 'gdc_sample_type': 'Primary Tumor' } +C224106.WGS.T.hg38 C224106 GBM WGS tumor 7316UP-287-1105192 a5fb9d82-568c-4f92-9d20-ff80d6bce284_wgs_gdc_realn.bam 142815256943 BAM harmonized CPTAC3 4b8621c8-b515-46b2-be8b-6ae003ea0291 57928ee84391098ae6aff62ab601e720 { 'aliquot_tag': 'ALQ_65344b2f', 'gdc_sample_type': 'Primary Tumor' } C224106.WXS.N C224106 GBM WXS blood_normal 7316UP-287-1105215 7316UP-287-1105215.WholeExome.RP-1303.bam 28440047682 BAM aligned CPTAC3 33ee6834-8406-45cc-ac7c-2f50544151bc aed1e3168ad3e0b30c4ec492cac763d0 { 'aliquot_tag': 'ALQ_31cfeadd', 'gdc_sample_type': 'Blood Derived Normal' } +C224106.WXS.N.hg38 C224106 GBM WXS blood_normal 7316UP-287-1105215 e7e95603-5344-4c1c-9521-c6170cd21afc_wxs_gdc_realn.bam 38658005464 BAM harmonized CPTAC3 027df754-bfba-4dd3-a19e-66052fdfd928 daa060fafa614ee597a7886c022014b9 { 'aliquot_tag': 'ALQ_31cfeadd', 'gdc_sample_type': 'Blood Derived Normal' } C224106.WXS.R C224106 GBM WXS recurrent_tumor 7316UP-895-1105233 7316UP-895-1105233.WholeExome.RP-1303.bam 20933872946 BAM aligned CPTAC3 597f884b-d907-4300-8505-658bee55f16f c60da75d2d6c71982090f7b645d81df0 { 'aliquot_tag': 'ALQ_c9013656', 'gdc_sample_type': 'Recurrent Tumor' } +C224106.WXS.R.hg38 C224106 GBM WXS recurrent_tumor 7316UP-895-1105233 3a5851ea-4c01-4e59-9b77-648f9049b8f5_wxs_gdc_realn.bam 28402074341 BAM harmonized CPTAC3 867233a4-8efd-4dbe-8ec6-bdd9c988c603 09855f3fbfdd7f14f90189c28a957821 { 'aliquot_tag': 'ALQ_c9013656', 'gdc_sample_type': 'Recurrent Tumor' } C224106.WXS.T C224106 GBM WXS tumor 7316UP-287-1105192 7316UP-287-1105192.WholeExome.RP-1303.bam 19953957842 BAM aligned CPTAC3 3bf37e1a-b64b-422e-9a8e-615a7be715d1 bd66881d33a80743296fbe8bfaee4c8e { 'aliquot_tag': 'ALQ_65344b2f', 'gdc_sample_type': 'Primary Tumor' } +C224106.WXS.T.hg38 C224106 GBM WXS tumor 7316UP-287-1105192 a5fb9d82-568c-4f92-9d20-ff80d6bce284_wxs_gdc_realn.bam 27371401350 BAM harmonized CPTAC3 3345bb07-d0be-4306-be6e-ea632f8c5fc8 df80116e4bc22f698838a88d49993f27 { 'aliquot_tag': 'ALQ_65344b2f', 'gdc_sample_type': 'Primary Tumor' } C224967.DUP_97671269.MethArray.Green.R C224967 GBM Methylation Array recurrent_tumor 7316UP-1273 205828590069_R02C01_Grn.idat 13677905 IDAT Green NA CPTAC3 4002cea1-cf8f-4e48-a219-cf7e1964c589 cd9f6a2ddcba09c12a31ea8f77faa598 { 'aliquot_tag': 'DUP_97671269', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C224967.DUP_97671269.MethArray.Red.R C224967 GBM Methylation Array recurrent_tumor 7316UP-1273 205828590069_R02C01_Red.idat 13677905 IDAT Red NA CPTAC3 6d0d0709-3af1-4c8b-9500-49585579b21e 45dac0ea9d2079cd44bdcede08d04511 { 'aliquot_tag': 'DUP_97671269', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C224967.DUP_97671269.WXS.R C224967 GBM WXS recurrent_tumor 7316UP-1273 7316UP-1273.WholeExome.RP-1303.bam 27413593642 BAM aligned CPTAC3 f5a8ace0-8716-4e5d-af37-d12769d3edc6 e2741b38c4d431dfbaeb72013ed8aa51 { 'aliquot_tag': 'DUP_97671269', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C224967.DUP_97671269.WXS.R.hg38 C224967 GBM WXS recurrent_tumor 7316UP-1273 c520a681-f3c5-4157-8b67-364ad4104265_wxs_gdc_realn.bam 37149938502 BAM harmonized CPTAC3 e72af532-2544-456c-beb7-03e7c6285da4 dbd50a58144863afffb399615af92024 { 'aliquot_tag': 'DUP_97671269', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C224967.DUP_ef1b8e33.MethArray.Green.T C224967 GBM Methylation Array tumor 7316UP-743 205705520055_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b500a541-9378-4e4c-88ab-66da85c4df36 79e729c911ac2d984e47d38769907d1b { 'aliquot_tag': 'DUP_ef1b8e33', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C224967.DUP_ef1b8e33.MethArray.Red.T C224967 GBM Methylation Array tumor 7316UP-743 205705520055_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 2a4b881c-fbf2-4238-98a4-bd221e822821 f87bb0fe3dc909a45dfa8c8974b2b490 { 'aliquot_tag': 'DUP_ef1b8e33', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C224967.DUP_ef1b8e33.WGS.T C224967 GBM WGS tumor 7316UP-743 7316UP-743.WholeGenome.RP-2158.bam 58240269975 BAM aligned CPTAC3 4578becb-41cf-4fc7-b259-ee6f44f09eaa aade7bc9761d2e3465391e09307baeff { 'aliquot_tag': 'DUP_ef1b8e33', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C224967.DUP_ef1b8e33.WGS.T.hg38 C224967 GBM WGS tumor 7316UP-743 75069e02-ca1b-4e5d-bd9a-7e0996430dec_wgs_gdc_realn.bam 165788884307 BAM harmonized CPTAC3 fda005d3-c221-4963-8290-3cf5beadeb01 3c4dcb78ffde05188f0f602019a9bebe { 'aliquot_tag': 'DUP_ef1b8e33', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C224967.DUP_ef1b8e33.WXS.T C224967 GBM WXS tumor 7316UP-743 7316UP-743.WholeExome.RP-1303.bam 31009431067 BAM aligned CPTAC3 dc44ea94-f178-4e1b-858b-a0f67cca2112 7e7177cc1a11ab3d1d8aa31148f43e5c { 'aliquot_tag': 'DUP_ef1b8e33', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C224967.DUP_ef1b8e33.WXS.T.hg38 C224967 GBM WXS tumor 7316UP-743 75069e02-ca1b-4e5d-bd9a-7e0996430dec_wxs_gdc_realn.bam 109072739431 BAM harmonized CPTAC3 406c1599-e9aa-41f3-95d8-3126dece3c82 2d9000c96bf9f08e036ecb2cd60dd29c { 'aliquot_tag': 'DUP_ef1b8e33', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C224967.miRNA-Seq.R C224967 GBM miRNA-Seq recurrent_tumor 7316UP-1273-1104786 210817_UNC31-K00269_0302_AHLCTHBBXY_TCGAAG_S39_L002_R1_001.unaln.bam 236059410 BAM unaligned CPTAC3 3df7ec78-3abf-45d4-8ac4-8a098c64eb96 6d4c2ff744f1e41dfa6b467eda5daebf { 'aliquot_tag': 'ALQ_a8382d92', 'gdc_sample_type': 'Recurrent Tumor' } +C224967.miRNA-Seq.R.hg38 C224967 GBM miRNA-Seq recurrent_tumor 7316UP-1273-1104786 83ba4279-220e-4b18-9b10-8685b9f3632c_mirnaseq_gdc_realn.bam 257329223 BAM harmonized CPTAC3 5203d565-a9f5-4627-aa5f-a7cad0cb9b99 6c3ee52eb0e13f62771fccf56afde2e2 { 'aliquot_tag': 'ALQ_a8382d92', 'gdc_sample_type': 'Recurrent Tumor' } C224967.miRNA-Seq.T C224967 GBM miRNA-Seq tumor 7316UP-743-1104807 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGGCC_S20_L003_R1_001.unaln.bam 172958302 BAM unaligned CPTAC3 8ae6c6ac-748f-4128-8d10-da7b703c9372 a06f15f14946a73288679000d92852a5 { 'aliquot_tag': 'ALQ_457645c3', 'gdc_sample_type': 'Primary Tumor' } -C224967.RNA-Seq.R1_L001.T C224967 GBM RNA-Seq tumor 7316UP-743-1104807 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R1_001.fastq.gz 3216445001 FASTQ R1_L001 unaligned CPTAC3 10469910-29ac-4d88-bc8c-42a9bd4cedf1 467e08a3038933a37fd6b3889602d72a { 'aliquot_tag': 'ALQ_457645c3', 'gdc_sample_type': 'Primary Tumor' } -C224967.RNA-Seq.R1_L008.R C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 3738509596 FASTQ R1_L008 unaligned CPTAC3 1d32b16a-7a2b-49dc-b7b1-0e75d8d6806c e6b731b3f4fe3e5e4f97863922b138d2 { 'aliquot_tag': 'ALQ_a8382d92', 'gdc_sample_type': 'Recurrent Tumor' } -C224967.RNA-Seq.R2_L001.T C224967 GBM RNA-Seq tumor 7316UP-743-1104807 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R2_001.fastq.gz 3726614863 FASTQ R2_L001 unaligned CPTAC3 e408bab8-2f30-42ba-9eeb-cc5c74ccfa0c b4887b93df864da46fa378a4374ab08e { 'aliquot_tag': 'ALQ_457645c3', 'gdc_sample_type': 'Primary Tumor' } -C224967.RNA-Seq.R2_L008.R C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4177127662 FASTQ R2_L008 unaligned CPTAC3 f544bc29-8e0c-4054-b284-10d737bbf7fa b157aee2da7fad0c0a0bb826f0f7bfb9 { 'aliquot_tag': 'ALQ_a8382d92', 'gdc_sample_type': 'Recurrent Tumor' } +C224967.miRNA-Seq.T.hg38 C224967 GBM miRNA-Seq tumor 7316UP-743-1104807 4a7a1f43-b4f6-44af-bf0e-7b839d7ada84_mirnaseq_gdc_realn.bam 193530803 BAM harmonized CPTAC3 de37781b-ef07-4921-8f08-cabea685470c 7209c129ce4abb3658b033b1471973ca { 'aliquot_tag': 'ALQ_457645c3', 'gdc_sample_type': 'Primary Tumor' } +C224967.RNA-Seq.chimeric.R.hg38 C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 c48c1c6c-25c0-467c-bd1d-22e0b7f20106.rna_seq.chimeric.gdc_realn.bam 30323269 BAM chimeric harmonized CPTAC3 364f4faa-f00e-49ef-970b-37b841ef8b35 51d631323f2820e8f88b9744e122b220 { 'aliquot_tag': 'ALQ_a8382d92', 'gdc_sample_type': 'Recurrent Tumor' } +C224967.RNA-Seq.chimeric.T.hg38 C224967 GBM RNA-Seq tumor 7316UP-743-1104807 843c7cdd-ec6e-4ca1-bcc4-55b6e43f2962.rna_seq.chimeric.gdc_realn.bam 68534413 BAM chimeric harmonized CPTAC3 c3170a42-816c-4778-80c3-02858a103744 765e0827faa846346d0c3fbd4c142eea { 'aliquot_tag': 'ALQ_457645c3', 'gdc_sample_type': 'Primary Tumor' } +C224967.RNA-Seq.genomic.R.hg38 C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 c48c1c6c-25c0-467c-bd1d-22e0b7f20106.rna_seq.genomic.gdc_realn.bam 10839337672 BAM genomic harmonized CPTAC3 acbd502e-6250-448e-86a7-fdb7b3eb3ce7 74b3b2983ccbcd8eb18299bc2ba233dc { 'aliquot_tag': 'ALQ_a8382d92', 'gdc_sample_type': 'Recurrent Tumor' } +C224967.RNA-Seq.genomic.T.hg38 C224967 GBM RNA-Seq tumor 7316UP-743-1104807 843c7cdd-ec6e-4ca1-bcc4-55b6e43f2962.rna_seq.genomic.gdc_realn.bam 10096056490 BAM genomic harmonized CPTAC3 fc2459b2-3b27-4621-b7f6-523d85a24427 ffcba4d32fc9f9338b25ab46a9392413 { 'aliquot_tag': 'ALQ_457645c3', 'gdc_sample_type': 'Primary Tumor' } +C224967.RNA-Seq.R1_L001.T C224967 GBM RNA-Seq tumor 7316UP-743-1104807 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R1_001.fastq.gz 3216445001 FASTQ R1_L001 unaligned CPTAC3 10469910-29ac-4d88-bc8c-42a9bd4cedf1 467e08a3038933a37fd6b3889602d72a { 'aliquot_tag': 'ALQ_457645c3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C224967.RNA-Seq.R1_L008.R C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 3738509596 FASTQ R1_L008 unaligned CPTAC3 1d32b16a-7a2b-49dc-b7b1-0e75d8d6806c e6b731b3f4fe3e5e4f97863922b138d2 { 'aliquot_tag': 'ALQ_a8382d92', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L008' } +C224967.RNA-Seq.R2_L001.T C224967 GBM RNA-Seq tumor 7316UP-743-1104807 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATGGAT-CTGTATTA_S2_L001_R2_001.fastq.gz 3726614863 FASTQ R2_L001 unaligned CPTAC3 e408bab8-2f30-42ba-9eeb-cc5c74ccfa0c b4887b93df864da46fa378a4374ab08e { 'aliquot_tag': 'ALQ_457645c3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C224967.RNA-Seq.R2_L008.R C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4177127662 FASTQ R2_L008 unaligned CPTAC3 f544bc29-8e0c-4054-b284-10d737bbf7fa b157aee2da7fad0c0a0bb826f0f7bfb9 { 'aliquot_tag': 'ALQ_a8382d92', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L008' } +C224967.RNA-Seq.transcriptome.R.hg38 C224967 GBM RNA-Seq recurrent_tumor 7316UP-1273-1104786 c48c1c6c-25c0-467c-bd1d-22e0b7f20106.rna_seq.transcriptome.gdc_realn.bam 14270529357 BAM transcriptome harmonized CPTAC3 480838d5-3629-40fd-9a36-7e76fc4a1616 c3a7810d475dffac045842130b0dd8dd { 'aliquot_tag': 'ALQ_a8382d92', 'gdc_sample_type': 'Recurrent Tumor' } +C224967.RNA-Seq.transcriptome.T.hg38 C224967 GBM RNA-Seq tumor 7316UP-743-1104807 843c7cdd-ec6e-4ca1-bcc4-55b6e43f2962.rna_seq.transcriptome.gdc_realn.bam 9732982069 BAM transcriptome harmonized CPTAC3 99b32129-2c2b-477b-bda2-938c9d72c35a 9472de58eda5e23228c617ed54d6d4ab { 'aliquot_tag': 'ALQ_457645c3', 'gdc_sample_type': 'Primary Tumor' } C224967.WGS.R C224967 GBM WGS recurrent_tumor 7316UP-1273-1105249 7316UP-1273-1105249.WholeGenome.RP-2158.bam 45552404417 BAM aligned CPTAC3 44bc125a-5a87-4639-be3a-23e0d55a33cd 78c6125ab72d5a8d2f9714c84c9617c0 { 'aliquot_tag': 'ALQ_2a45da81', 'gdc_sample_type': 'Recurrent Tumor' } +C224967.WGS.R.hg38 C224967 GBM WGS recurrent_tumor 7316UP-1273-1105249 8147fe67-4eaa-416d-b5cd-88979695055e_wgs_gdc_realn.bam 131842304442 BAM harmonized CPTAC3 fb85341b-132c-487f-b999-2ca9bcd90f2f 6b78aad0b7e9308d92f34eb696f712e6 { 'aliquot_tag': 'ALQ_2a45da81', 'gdc_sample_type': 'Recurrent Tumor' } C224967.WXS.N C224967 GBM WXS blood_normal 7316UP-743-1105291 7316UP-743-1105291.WholeExome.RP-1303.bam 26575645784 BAM aligned CPTAC3 9d3f989c-48b1-449b-9552-e9f9c47fd3be a62b4c12bea5582bb8552bb220518bb7 { 'aliquot_tag': 'ALQ_c8fcb90c', 'gdc_sample_type': 'Blood Derived Normal' } +C224967.WXS.N.hg38 C224967 GBM WXS blood_normal 7316UP-743-1105291 de2d3f21-8506-44b5-b2d4-194b8393dffa_wxs_gdc_realn.bam 36031479017 BAM harmonized CPTAC3 d02d8d09-e626-45ba-b5d5-a1910e38405f 9f2d73f961840586b098a2f2a47fa6be { 'aliquot_tag': 'ALQ_c8fcb90c', 'gdc_sample_type': 'Blood Derived Normal' } C224967.WXS.R C224967 GBM WXS recurrent_tumor 7316UP-1273-1105249 7316UP-1273-1105249.WholeExome.RP-1303.bam 21705660534 BAM aligned CPTAC3 399d85bf-b1d9-4b95-bef3-dc2eea0211c5 38fc15dc9b25761a83a4c9b9561126e7 { 'aliquot_tag': 'ALQ_2a45da81', 'gdc_sample_type': 'Recurrent Tumor' } +C224967.WXS.R.hg38 C224967 GBM WXS recurrent_tumor 7316UP-1273-1105249 8147fe67-4eaa-416d-b5cd-88979695055e_wxs_gdc_realn.bam 29632840126 BAM harmonized CPTAC3 3d802adb-e376-49a5-815e-6eaaab1b1acd c24aeb6189e9dbfd03fcbecc59320d0c { 'aliquot_tag': 'ALQ_2a45da81', 'gdc_sample_type': 'Recurrent Tumor' } C224967.WXS.T C224967 GBM WXS tumor 7316UP-743-1105199 7316UP-743-1105199.WholeExome.RP-1303.bam 25027597697 BAM aligned CPTAC3 4099c82e-80c2-44c2-935b-44c9ded7faae 861fcc1589cfb9b045ba18b016b949cf { 'aliquot_tag': 'ALQ_c4618f67', 'gdc_sample_type': 'Primary Tumor' } +C224967.WXS.T.hg38 C224967 GBM WXS tumor 7316UP-743-1105199 aac08359-e9fe-4cf7-b5e1-12cc6dfa6cf4_wxs_gdc_realn.bam 33904639770 BAM harmonized CPTAC3 63f77087-cd4f-4b87-a777-57a55abe245f e8e1c40752d291ee6756e5ca3ae00d69 { 'aliquot_tag': 'ALQ_c4618f67', 'gdc_sample_type': 'Primary Tumor' } C229764.DUP_48c7f5e2.MethArray.Green.R C229764 GBM Methylation Array recurrent_tumor 7316UP-2110 205705520162_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 08f543cf-ce57-48bc-89c6-7b5051512dc1 b4be3e822496aa84c80a03a5ca68cf94 { 'aliquot_tag': 'DUP_48c7f5e2', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C229764.DUP_48c7f5e2.MethArray.Red.R C229764 GBM Methylation Array recurrent_tumor 7316UP-2110 205705520162_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a03c58df-4dd2-41f7-8304-884fa6247a34 d650a3dd44d60aa7e78cf1d679363114 { 'aliquot_tag': 'DUP_48c7f5e2', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C229764.DUP_48c7f5e2.WGS.R C229764 GBM WGS recurrent_tumor 7316UP-2110 7316UP-2110.WholeGenome.RP-2158.bam 48573711632 BAM aligned CPTAC3 8fa375f8-bd23-40c7-98b1-7f120b10f23c 7ba18414fc18d12a46b4d05a3e3eeb64 { 'aliquot_tag': 'DUP_48c7f5e2', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C229764.DUP_48c7f5e2.WGS.R.hg38 C229764 GBM WGS recurrent_tumor 7316UP-2110 95dbfbd1-8615-4dc6-bae8-046c386d254b_wgs_gdc_realn.bam 144409383521 BAM harmonized CPTAC3 57f3f9b0-e62f-4314-9797-0f674d15c40f 0d639daa07fbea46f25c8e0d357b76a2 { 'aliquot_tag': 'DUP_48c7f5e2', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C229764.DUP_48c7f5e2.WXS.R C229764 GBM WXS recurrent_tumor 7316UP-2110 7316UP-2110.WholeExome.RP-1303.bam 24570787243 BAM aligned CPTAC3 efe58f46-f317-4800-8c7c-bf88eae7ee03 f2fee4a072bc7f5bfba52f7016bd838c { 'aliquot_tag': 'DUP_48c7f5e2', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C229764.DUP_48c7f5e2.WXS.R.hg38 C229764 GBM WXS recurrent_tumor 7316UP-2110 95dbfbd1-8615-4dc6-bae8-046c386d254b_wxs_gdc_realn.bam 33106683650 BAM harmonized CPTAC3 8e1d0018-334e-42c4-89de-8f59de3b608a 89990717ccc6bf754176683548238638 { 'aliquot_tag': 'DUP_48c7f5e2', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C229764.miRNA-Seq.R C229764 GBM miRNA-Seq recurrent_tumor 7316UP-2110-1104776 210817_UNC31-K00269_0302_AHLCTHBBXY_CGGAAT_S12_L001_R1_001.unaln.bam 301422328 BAM unaligned CPTAC3 107a7e23-4b45-431a-808f-f24ff8bfd125 e96783b1b540c2fd9a3012479e67afa4 { 'aliquot_tag': 'ALQ_f54fc92e', 'gdc_sample_type': 'Recurrent Tumor' } +C229764.miRNA-Seq.R.hg38 C229764 GBM miRNA-Seq recurrent_tumor 7316UP-2110-1104776 b3193f92-588e-49d1-9ef3-5516f775b677_mirnaseq_gdc_realn.bam 335094068 BAM harmonized CPTAC3 eb2eec14-d46f-40b7-b0ef-095c418130f0 4665a796ea51addca039778cf5455feb { 'aliquot_tag': 'ALQ_f54fc92e', 'gdc_sample_type': 'Recurrent Tumor' } C229764.miRNA-Seq.T C229764 GBM miRNA-Seq tumor 7316UP-109-1104779 210817_UNC31-K00269_0302_AHLCTHBBXY_CTCAGA_S15_L001_R1_001.unaln.bam 234792723 BAM unaligned CPTAC3 fbc18909-5047-49b6-b0b4-575bf1147844 6aed41a40f6789c5c6e499bb19a26447 { 'aliquot_tag': 'ALQ_92a35999', 'gdc_sample_type': 'Primary Tumor' } -C229764.RNA-Seq.R1_L003.R C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R1_001.fastq.gz 3252755048 FASTQ R1_L003 unaligned CPTAC3 c530183b-3935-4d0a-a887-aa028b77f774 a39446603df4a6096eddf88efb543341 { 'aliquot_tag': 'ALQ_f54fc92e', 'gdc_sample_type': 'Recurrent Tumor' } -C229764.RNA-Seq.R1_L003.T C229764 GBM RNA-Seq tumor 7316UP-109-1104779 210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R1_001.fastq.gz 4111525485 FASTQ R1_L003 unaligned CPTAC3 32c3d5c1-3381-4ec0-b60d-414d6275cbf0 695953ee28e4d63be93336ca22fe364f { 'aliquot_tag': 'ALQ_92a35999', 'gdc_sample_type': 'Primary Tumor' } -C229764.RNA-Seq.R2_L003.R C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R2_001.fastq.gz 3465575112 FASTQ R2_L003 unaligned CPTAC3 d5fbc2da-be05-466a-9433-309fcd49c80e 9035d0f028ee3596d830327f8e5eb75b { 'aliquot_tag': 'ALQ_f54fc92e', 'gdc_sample_type': 'Recurrent Tumor' } -C229764.RNA-Seq.R2_L003.T C229764 GBM RNA-Seq tumor 7316UP-109-1104779 210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R2_001.fastq.gz 4429273944 FASTQ R2_L003 unaligned CPTAC3 fda85eb9-8e12-427b-87f4-72c840b59a49 2c91fc7eafa8b73bef772fb316b27f41 { 'aliquot_tag': 'ALQ_92a35999', 'gdc_sample_type': 'Primary Tumor' } +C229764.miRNA-Seq.T.hg38 C229764 GBM miRNA-Seq tumor 7316UP-109-1104779 d8a8ed73-29de-4eb0-93b6-b19f0634c0f0_mirnaseq_gdc_realn.bam 272723935 BAM harmonized CPTAC3 ee020aff-f14e-4e47-b639-41a927d9d037 0c98af92d9e600ceb4cb12711ef3bc65 { 'aliquot_tag': 'ALQ_92a35999', 'gdc_sample_type': 'Primary Tumor' } +C229764.RNA-Seq.chimeric.R.hg38 C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 5133f0f8-a82d-4120-95ee-36c4a9e32984.rna_seq.chimeric.gdc_realn.bam 41099436 BAM chimeric harmonized CPTAC3 8524b6c4-5cfd-4339-aad2-b5643be343c7 2ab92d76d71267e1510ea69afc5bc8b1 { 'aliquot_tag': 'ALQ_f54fc92e', 'gdc_sample_type': 'Recurrent Tumor' } +C229764.RNA-Seq.chimeric.T.hg38 C229764 GBM RNA-Seq tumor 7316UP-109-1104779 27c9188b-2840-4286-b197-cecc854b5899.rna_seq.chimeric.gdc_realn.bam 55566293 BAM chimeric harmonized CPTAC3 d4f71f9c-c2fc-410c-8207-9bc3665f33d1 9e2e8273f38235b9c134d162ae098bc7 { 'aliquot_tag': 'ALQ_92a35999', 'gdc_sample_type': 'Primary Tumor' } +C229764.RNA-Seq.genomic.R.hg38 C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 5133f0f8-a82d-4120-95ee-36c4a9e32984.rna_seq.genomic.gdc_realn.bam 6839473839 BAM genomic harmonized CPTAC3 84b8535b-d50c-4972-9a69-834b0c496868 55d1be4ec81cd6e50ff701dc177c2d18 { 'aliquot_tag': 'ALQ_f54fc92e', 'gdc_sample_type': 'Recurrent Tumor' } +C229764.RNA-Seq.genomic.T.hg38 C229764 GBM RNA-Seq tumor 7316UP-109-1104779 27c9188b-2840-4286-b197-cecc854b5899.rna_seq.genomic.gdc_realn.bam 8876149296 BAM genomic harmonized CPTAC3 10e482d1-5af7-4a99-bce4-eb0341dfa3ed 936974b06774a305f77a3421636966ae { 'aliquot_tag': 'ALQ_92a35999', 'gdc_sample_type': 'Primary Tumor' } +C229764.RNA-Seq.R1_L003.R C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R1_001.fastq.gz 3252755048 FASTQ R1_L003 unaligned CPTAC3 c530183b-3935-4d0a-a887-aa028b77f774 a39446603df4a6096eddf88efb543341 { 'aliquot_tag': 'ALQ_f54fc92e', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L003' } +C229764.RNA-Seq.R1_L003.T C229764 GBM RNA-Seq tumor 7316UP-109-1104779 210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R1_001.fastq.gz 4111525485 FASTQ R1_L003 unaligned CPTAC3 32c3d5c1-3381-4ec0-b60d-414d6275cbf0 695953ee28e4d63be93336ca22fe364f { 'aliquot_tag': 'ALQ_92a35999', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C229764.RNA-Seq.R2_L003.R C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 210713_UNC32-K00270_0291_AHLK5VBBXY_AACGTTCC-GGAGTACT_S9_L003_R2_001.fastq.gz 3465575112 FASTQ R2_L003 unaligned CPTAC3 d5fbc2da-be05-466a-9433-309fcd49c80e 9035d0f028ee3596d830327f8e5eb75b { 'aliquot_tag': 'ALQ_f54fc92e', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L003' } +C229764.RNA-Seq.R2_L003.T C229764 GBM RNA-Seq tumor 7316UP-109-1104779 210713_UNC32-K00270_0291_AHLK5VBBXY_GCAGAATT-ACCGGCCA_S11_L003_R2_001.fastq.gz 4429273944 FASTQ R2_L003 unaligned CPTAC3 fda85eb9-8e12-427b-87f4-72c840b59a49 2c91fc7eafa8b73bef772fb316b27f41 { 'aliquot_tag': 'ALQ_92a35999', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C229764.RNA-Seq.transcriptome.R.hg38 C229764 GBM RNA-Seq recurrent_tumor 7316UP-2110-1104776 5133f0f8-a82d-4120-95ee-36c4a9e32984.rna_seq.transcriptome.gdc_realn.bam 15046438368 BAM transcriptome harmonized CPTAC3 d6b35596-8b2e-47b4-93c4-15ce78106712 06e8e91c9c46a13bc8b6568f55156b7a { 'aliquot_tag': 'ALQ_f54fc92e', 'gdc_sample_type': 'Recurrent Tumor' } +C229764.RNA-Seq.transcriptome.T.hg38 C229764 GBM RNA-Seq tumor 7316UP-109-1104779 27c9188b-2840-4286-b197-cecc854b5899.rna_seq.transcriptome.gdc_realn.bam 19591889660 BAM transcriptome harmonized CPTAC3 f4434914-5527-4693-a117-71220abe2e40 a45ca7726ee04f2009d145eee43b7158 { 'aliquot_tag': 'ALQ_92a35999', 'gdc_sample_type': 'Primary Tumor' } C229764.WGS.N C229764 GBM WGS blood_normal 7316UP-1359-1105275 7316UP-1359-1105275.WholeGenome.RP-2158.bam 53215888402 BAM aligned CPTAC3 b9ba5b0f-051d-4473-a57f-ce4c49cfd25e 96ebd239c14cb582fcd4ec7574b6dd86 { 'aliquot_tag': 'ALQ_588b400a', 'gdc_sample_type': 'Blood Derived Normal' } +C229764.WGS.N.hg38 C229764 GBM WGS blood_normal 7316UP-1359-1105275 7733096d-86eb-4bc6-b8a6-95b571be3af6_wgs_gdc_realn.bam 156335496900 BAM harmonized CPTAC3 3f00fbf7-325a-4da0-b5bc-307b35475f41 14a63a441b8e3be7186fa01c9ef47098 { 'aliquot_tag': 'ALQ_588b400a', 'gdc_sample_type': 'Blood Derived Normal' } C229764.WGS.R C229764 GBM WGS recurrent_tumor 7316UP-2110-1105239 7316UP-2110-1105239.WholeGenome.RP-2158.bam 69328226067 BAM aligned CPTAC3 469debd9-3972-41fa-b086-a3f552d60a0a e90361cb358d4070175f584d720920ef { 'aliquot_tag': 'ALQ_bfebb435', 'gdc_sample_type': 'Recurrent Tumor' } +C229764.WGS.R.hg38 C229764 GBM WGS recurrent_tumor 7316UP-2110-1105239 bd5d6c5d-8def-4f58-a5c6-a9b29d75deee_wgs_gdc_realn.bam 197192726740 BAM harmonized CPTAC3 9c8669b6-ad42-4dd7-828e-b4e6cf6f227e 8a8acd9e330b6438b700f44928dfbbe9 { 'aliquot_tag': 'ALQ_bfebb435', 'gdc_sample_type': 'Recurrent Tumor' } C229764.WGS.T C229764 GBM WGS tumor 7316UP-109-1105242 7316UP-109-1105242.WholeGenome.RP-2158.bam 50355188086 BAM aligned CPTAC3 4d268b30-5092-4aa4-a709-49ceb721bf33 0fd9b2d4d618dba2bef0f4624985a881 { 'aliquot_tag': 'ALQ_902b765c', 'gdc_sample_type': 'Primary Tumor' } +C229764.WGS.T.hg38 C229764 GBM WGS tumor 7316UP-109-1105242 ac8d4e2a-cbf6-4679-b022-ab0518e1ae21_wgs_gdc_realn.bam 153712017045 BAM harmonized CPTAC3 91eeaff0-8519-4a8f-9860-bddad9f65edc cf29132d69dd3f72d2bd741579bc5844 { 'aliquot_tag': 'ALQ_902b765c', 'gdc_sample_type': 'Primary Tumor' } C229764.WXS.N C229764 GBM WXS blood_normal 7316UP-1359-1105275 7316UP-1359-1105275.WholeExome.RP-1303.bam 26629160944 BAM aligned CPTAC3 ba1c0111-e1d0-412a-b58a-ba69241486f7 1aa2fa4ce21dd64c0fc1c3d5947788c0 { 'aliquot_tag': 'ALQ_588b400a', 'gdc_sample_type': 'Blood Derived Normal' } +C229764.WXS.N.hg38 C229764 GBM WXS blood_normal 7316UP-1359-1105275 7733096d-86eb-4bc6-b8a6-95b571be3af6_wxs_gdc_realn.bam 36069064590 BAM harmonized CPTAC3 b39d806b-6907-4b17-b822-b9f17b2d8be2 e5656236bbf156f7efeba41bd7f76bc3 { 'aliquot_tag': 'ALQ_588b400a', 'gdc_sample_type': 'Blood Derived Normal' } C229764.WXS.R C229764 GBM WXS recurrent_tumor 7316UP-2110-1105239 7316UP-2110-1105239.WholeExome.RP-1303.bam 32693049354 BAM aligned CPTAC3 9443852b-2959-4d43-8e1f-4e88b44427bd 67142e1828686f7de45067b876d9dd39 { 'aliquot_tag': 'ALQ_bfebb435', 'gdc_sample_type': 'Recurrent Tumor' } +C229764.WXS.R.hg38 C229764 GBM WXS recurrent_tumor 7316UP-2110-1105239 bd5d6c5d-8def-4f58-a5c6-a9b29d75deee_wxs_gdc_realn.bam 44015856796 BAM harmonized CPTAC3 b4845ff0-b4f1-4eaf-8157-904e149293a7 4f03f98f942e8a7d260ab3a47cbc87ba { 'aliquot_tag': 'ALQ_bfebb435', 'gdc_sample_type': 'Recurrent Tumor' } C229764.WXS.T C229764 GBM WXS tumor 7316UP-109-1105242 7316UP-109-1105242.WholeExome.RP-1303.bam 29536235729 BAM aligned CPTAC3 0483328a-3997-42e0-b9a3-b05d5c0b3caa dc050ffac908ccc496dab85013be2c25 { 'aliquot_tag': 'ALQ_902b765c', 'gdc_sample_type': 'Primary Tumor' } +C229764.WXS.T.hg38 C229764 GBM WXS tumor 7316UP-109-1105242 ac8d4e2a-cbf6-4679-b022-ab0518e1ae21_wxs_gdc_realn.bam 40270433118 BAM harmonized CPTAC3 0858e1ec-6d27-4654-9a9d-ac8d08173e1a c86dea33b23533eb22572c0dabbd7507 { 'aliquot_tag': 'ALQ_902b765c', 'gdc_sample_type': 'Primary Tumor' } C231855.DUP_40a9c1b9.MethArray.Green.T C231855 GBM Methylation Array tumor 7316UP-160 205707890106_R01C01_Grn.idat 13677901 IDAT Green NA CPTAC3 0901786f-574b-4f04-b20f-757e7f2faf74 6e05a44e895b04ec3f8e5ccb721ed8c2 { 'aliquot_tag': 'DUP_40a9c1b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C231855.DUP_40a9c1b9.MethArray.Red.T C231855 GBM Methylation Array tumor 7316UP-160 205707890106_R01C01_Red.idat 13677901 IDAT Red NA CPTAC3 a5d3cfa1-7532-41cf-bcd2-143b08da96f2 a5ed924d837365764d706b862619dc05 { 'aliquot_tag': 'DUP_40a9c1b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C231855.DUP_40a9c1b9.WGS.T C231855 GBM WGS tumor 7316UP-160 7316UP-160.WholeGenome.RP-2158.bam 52825456796 BAM aligned CPTAC3 f0e32f34-00b0-429a-b9fc-697388a7c224 63b095da1dde6e564e64d109d7bd66b4 { 'aliquot_tag': 'DUP_40a9c1b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C231855.DUP_40a9c1b9.WGS.T.hg38 C231855 GBM WGS tumor 7316UP-160 8b5d164f-881e-476b-ad10-84e8b23a9601_wgs_gdc_realn.bam 161707686407 BAM harmonized CPTAC3 2ff2adc1-3b80-4db3-99ab-edb05cd0e375 16bea488d8e0569c670cb10a19a6980a { 'aliquot_tag': 'DUP_40a9c1b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C231855.DUP_40a9c1b9.WXS.T C231855 GBM WXS tumor 7316UP-160 7316UP-160.WholeExome.RP-1303.bam 22236292610 BAM aligned CPTAC3 11d145b2-db2c-459a-aceb-db63d81a4a5e 1e9410e4143f1673a6d51d68c543d85d { 'aliquot_tag': 'DUP_40a9c1b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C231855.DUP_40a9c1b9.WXS.T.hg38 C231855 GBM WXS tumor 7316UP-160 8b5d164f-881e-476b-ad10-84e8b23a9601_wxs_gdc_realn.bam 30332109330 BAM harmonized CPTAC3 aea7e706-e796-4b1f-bb99-40a333b400e9 e2d8ec7eb8780e225fc375bb47f9175b { 'aliquot_tag': 'DUP_40a9c1b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C231855.miRNA-Seq.R C231855 GBM miRNA-Seq recurrent_tumor 7316UP-421-1104795 210817_UNC31-K00269_0302_AHLCTHBBXY_ACTTGA_S23_L002_R1_001.unaln.bam 168987687 BAM unaligned CPTAC3 06659363-cbdb-4a45-b54f-69521e2def39 b75a10cdd03feb013a83b8c074bfa780 { 'aliquot_tag': 'ALQ_cbece65b', 'gdc_sample_type': 'Recurrent Tumor' } +C231855.miRNA-Seq.R.hg38 C231855 GBM miRNA-Seq recurrent_tumor 7316UP-421-1104795 f2d89a7e-919f-44da-af58-f12a713869e9_mirnaseq_gdc_realn.bam 192906602 BAM harmonized CPTAC3 ecb6a23b-da26-42db-81d2-af65b3cc26c4 56152873e6ee151d34b5790b27fe20cb { 'aliquot_tag': 'ALQ_cbece65b', 'gdc_sample_type': 'Recurrent Tumor' } C231855.miRNA-Seq.T C231855 GBM miRNA-Seq tumor 7316UP-160-1104784 220125_UNC32-K00270_0311_AHMNYYBBXY_CTAGCT_S11_L002_R1_001.unaln.bam 307910922 BAM unaligned CPTAC3 2873f023-f443-477c-8520-be60df760482 e35100b6aeabb9d3a4c83c7f838f9e68 { 'aliquot_tag': 'ALQ_ca37fff7', 'gdc_sample_type': 'Primary Tumor' } -C231855.RNA-Seq.R1_L001.R C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R1_001.fastq.gz 3391269224 FASTQ R1_L001 unaligned CPTAC3 5b018459-1fb0-458c-8d4b-40d6ace7089e ce026a24fc6e1bbe4c13f441f94f55da { 'aliquot_tag': 'ALQ_cbece65b', 'gdc_sample_type': 'Recurrent Tumor' } -C231855.RNA-Seq.R1_L003.T C231855 GBM RNA-Seq tumor 7316UP-160-1104784 210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R1_001.fastq.gz 4752824534 FASTQ R1_L003 unaligned CPTAC3 6a569c62-2dfe-4109-803d-dab5026bfec2 b78042be5bd11ead6f84cfc811983fd3 { 'aliquot_tag': 'ALQ_ca37fff7', 'gdc_sample_type': 'Primary Tumor' } -C231855.RNA-Seq.R2_L001.R C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R2_001.fastq.gz 3882186982 FASTQ R2_L001 unaligned CPTAC3 9d90d560-17cb-4038-a922-8e5f8d738b82 44abf091804b24627965df3cf9e17648 { 'aliquot_tag': 'ALQ_cbece65b', 'gdc_sample_type': 'Recurrent Tumor' } -C231855.RNA-Seq.R2_L003.T C231855 GBM RNA-Seq tumor 7316UP-160-1104784 210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R2_001.fastq.gz 5069843304 FASTQ R2_L003 unaligned CPTAC3 e487d435-f110-46da-9ed6-58814f3d33c4 8d70933e52650efd4db13d48eac69199 { 'aliquot_tag': 'ALQ_ca37fff7', 'gdc_sample_type': 'Primary Tumor' } +C231855.miRNA-Seq.T.hg38 C231855 GBM miRNA-Seq tumor 7316UP-160-1104784 7458187d-8cc9-4c51-9ff8-e1a981b7b656_mirnaseq_gdc_realn.bam 355835909 BAM harmonized CPTAC3 1e7f70bd-a31e-4f0c-891b-e272aa2fbc16 33b5b1335e080c26ec4ac2249d3ffea2 { 'aliquot_tag': 'ALQ_ca37fff7', 'gdc_sample_type': 'Primary Tumor' } +C231855.RNA-Seq.chimeric.R.hg38 C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 fb115f60-9ee3-4c94-bca8-464e6fd5f31a.rna_seq.chimeric.gdc_realn.bam 66296900 BAM chimeric harmonized CPTAC3 b0a9653e-ea87-44f0-bc39-006de70245a0 eeb8ff6a619a6ce74cf864b6691679d0 { 'aliquot_tag': 'ALQ_cbece65b', 'gdc_sample_type': 'Recurrent Tumor' } +C231855.RNA-Seq.chimeric.T.hg38 C231855 GBM RNA-Seq tumor 7316UP-160-1104784 eb51e7b1-db5f-405d-9b1e-0b123dfd97e6.rna_seq.chimeric.gdc_realn.bam 74542577 BAM chimeric harmonized CPTAC3 3230e199-e328-4dfe-81c3-1dffe38d3f24 ded2738ecbe906ccc61480fed64d91a0 { 'aliquot_tag': 'ALQ_ca37fff7', 'gdc_sample_type': 'Primary Tumor' } +C231855.RNA-Seq.genomic.R.hg38 C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 fb115f60-9ee3-4c94-bca8-464e6fd5f31a.rna_seq.genomic.gdc_realn.bam 8833797711 BAM genomic harmonized CPTAC3 6bcf1557-1dfe-44cb-a005-536aadf106be 731372c496b7bd8794a416a062e597d2 { 'aliquot_tag': 'ALQ_cbece65b', 'gdc_sample_type': 'Recurrent Tumor' } +C231855.RNA-Seq.genomic.T.hg38 C231855 GBM RNA-Seq tumor 7316UP-160-1104784 eb51e7b1-db5f-405d-9b1e-0b123dfd97e6.rna_seq.genomic.gdc_realn.bam 10544458404 BAM genomic harmonized CPTAC3 d78dc8a2-5618-4c76-93c8-05c1ff4a893a d2f1d5a4dba4f633c5294c26d11561cf { 'aliquot_tag': 'ALQ_ca37fff7', 'gdc_sample_type': 'Primary Tumor' } +C231855.RNA-Seq.R1_L001.R C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R1_001.fastq.gz 3391269224 FASTQ R1_L001 unaligned CPTAC3 5b018459-1fb0-458c-8d4b-40d6ace7089e ce026a24fc6e1bbe4c13f441f94f55da { 'aliquot_tag': 'ALQ_cbece65b', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L001' } +C231855.RNA-Seq.R1_L003.T C231855 GBM RNA-Seq tumor 7316UP-160-1104784 210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R1_001.fastq.gz 4752824534 FASTQ R1_L003 unaligned CPTAC3 6a569c62-2dfe-4109-803d-dab5026bfec2 b78042be5bd11ead6f84cfc811983fd3 { 'aliquot_tag': 'ALQ_ca37fff7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C231855.RNA-Seq.R2_L001.R C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 210811_UNC31-K00269_0301_AHLLC5BBXY_GCGCAAGC-TCACGCCG_S3_L001_R2_001.fastq.gz 3882186982 FASTQ R2_L001 unaligned CPTAC3 9d90d560-17cb-4038-a922-8e5f8d738b82 44abf091804b24627965df3cf9e17648 { 'aliquot_tag': 'ALQ_cbece65b', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L001' } +C231855.RNA-Seq.R2_L003.T C231855 GBM RNA-Seq tumor 7316UP-160-1104784 210811_UNC31-K00269_0301_AHLLC5BBXY_AACAGGTT-ATACCAAG_S9_L003_R2_001.fastq.gz 5069843304 FASTQ R2_L003 unaligned CPTAC3 e487d435-f110-46da-9ed6-58814f3d33c4 8d70933e52650efd4db13d48eac69199 { 'aliquot_tag': 'ALQ_ca37fff7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C231855.RNA-Seq.transcriptome.R.hg38 C231855 GBM RNA-Seq recurrent_tumor 7316UP-421-1104795 fb115f60-9ee3-4c94-bca8-464e6fd5f31a.rna_seq.transcriptome.gdc_realn.bam 9492637133 BAM transcriptome harmonized CPTAC3 ffb5246f-3957-4b18-bcd8-3c26805809d6 e8e082d79c8bca6322c8dc24caab1137 { 'aliquot_tag': 'ALQ_cbece65b', 'gdc_sample_type': 'Recurrent Tumor' } +C231855.RNA-Seq.transcriptome.T.hg38 C231855 GBM RNA-Seq tumor 7316UP-160-1104784 eb51e7b1-db5f-405d-9b1e-0b123dfd97e6.rna_seq.transcriptome.gdc_realn.bam 14972339378 BAM transcriptome harmonized CPTAC3 4cf0db20-dff2-4549-b0b9-ae91e8307fce a1942cccb63ec600136bc3a23a4a1747 { 'aliquot_tag': 'ALQ_ca37fff7', 'gdc_sample_type': 'Primary Tumor' } C231855.WGS.R C231855 GBM WGS recurrent_tumor 7316UP-421-1105260 7316UP-421-1105260.WholeGenome.RP-2158.bam 71075559854 BAM aligned CPTAC3 d3f53b40-80ff-4eb2-bbba-451850dcd22b 08eba3c821f43a3e34f3c5853b0cda05 { 'aliquot_tag': 'ALQ_8269ab95', 'gdc_sample_type': 'Recurrent Tumor' } +C231855.WGS.R.hg38 C231855 GBM WGS recurrent_tumor 7316UP-421-1105260 0a571249-9aa4-462a-97bc-b7e5ff23877c_wgs_gdc_realn.bam 210393794712 BAM harmonized CPTAC3 f57977b1-d154-4977-83a8-40a159f17710 fc48472567b8950e24723b0809ea2b87 { 'aliquot_tag': 'ALQ_8269ab95', 'gdc_sample_type': 'Recurrent Tumor' } C231855.WXS.N C231855 GBM WXS blood_normal 7316UP-421-1105288 7316UP-421-1105288.WholeExome.RP-1303.bam 20989442407 BAM aligned CPTAC3 a5f3e504-6c0f-4d0a-87a1-3d084a2f2734 b3327cf39590ba0487c935545ebd4238 { 'aliquot_tag': 'ALQ_12310e29', 'gdc_sample_type': 'Blood Derived Normal' } +C231855.WXS.N.hg38 C231855 GBM WXS blood_normal 7316UP-421-1105288 3fe163be-784a-408f-b167-9b1f65f2221e_wxs_gdc_realn.bam 28435638577 BAM harmonized CPTAC3 d03b4742-4fce-4819-8017-5644f76432ac 414556d35f7f730a2041b0ff93670c9a { 'aliquot_tag': 'ALQ_12310e29', 'gdc_sample_type': 'Blood Derived Normal' } C231855.WXS.R C231855 GBM WXS recurrent_tumor 7316UP-421-1105260 7316UP-421-1105260.WholeExome.RP-1303.bam 27632790176 BAM aligned CPTAC3 cf798c5b-546f-48b6-ac81-c41d4bf465a0 22481c96d46b469c8a3953bcc8afa9dc { 'aliquot_tag': 'ALQ_8269ab95', 'gdc_sample_type': 'Recurrent Tumor' } +C231855.WXS.R.hg38 C231855 GBM WXS recurrent_tumor 7316UP-421-1105260 0a571249-9aa4-462a-97bc-b7e5ff23877c_wxs_gdc_realn.bam 37396260309 BAM harmonized CPTAC3 c1fafb36-a4b7-4d78-9e52-11ad1f7d350f 6bd4353a2744383b64e96a16116fe204 { 'aliquot_tag': 'ALQ_8269ab95', 'gdc_sample_type': 'Recurrent Tumor' } C231855.WXS.T C231855 GBM WXS tumor 7316UP-160-1105247 7316UP-160-1105247.WholeExome.RP-1303.bam 23334674687 BAM aligned CPTAC3 379396e7-9602-4738-a39c-05ba14b6b2d8 7e8015254903fead24fa6d7edea66100 { 'aliquot_tag': 'ALQ_41fc44cf', 'gdc_sample_type': 'Primary Tumor' } +C231855.WXS.T.hg38 C231855 GBM WXS tumor 7316UP-160-1105247 ca322924-b07a-4fbb-8634-78e26e197671_wxs_gdc_realn.bam 32063571055 BAM harmonized CPTAC3 f12a807d-d1e9-4c32-a4ac-798ff0359c82 d47422753e5092d8f1b139f6aede15c0 { 'aliquot_tag': 'ALQ_41fc44cf', 'gdc_sample_type': 'Primary Tumor' } C234192.DUP_27ea3fbd.WGS.R C234192 GBM WGS recurrent_tumor 7316UP-1206-1105262 7316UP-1206-1105262.WholeGenome.RP-2158.bam 76244971420 BAM aligned CPTAC3 aa9a65b4-2314-476e-900f-53f5982d3ae4 735e0c01070a39b3ecca8bc118111c2d { 'aliquot_tag': 'DUP_27ea3fbd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C234192.DUP_27ea3fbd.WGS.R.hg38 C234192 GBM WGS recurrent_tumor 7316UP-1206-1105262 cc53cc56-d2d1-4e0d-9abb-fdebc31cfefb_wgs_gdc_realn.bam 233125734014 BAM harmonized CPTAC3 43a2c88a-f40a-46dc-a8ff-31e4865e89ae bba708aef1f6e6fa807f4644f51dfed0 { 'aliquot_tag': 'DUP_27ea3fbd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C234192.DUP_27ea3fbd.WXS.R C234192 GBM WXS recurrent_tumor 7316UP-1206-1105262 7316UP-1206-1105262.WholeExome.RP-1303.bam 31598002776 BAM aligned CPTAC3 8486ea12-0703-402e-98fe-20dc5fe589ae 7846bc703606e7a3d76f523668914855 { 'aliquot_tag': 'DUP_27ea3fbd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C234192.DUP_27ea3fbd.WXS.R.hg38 C234192 GBM WXS recurrent_tumor 7316UP-1206-1105262 cc53cc56-d2d1-4e0d-9abb-fdebc31cfefb_wxs_gdc_realn.bam 43324496713 BAM harmonized CPTAC3 55283a5b-910b-4090-a30b-3cab97864ea2 39523c20b3470c0fdb633ecf8730020a { 'aliquot_tag': 'DUP_27ea3fbd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C234192.DUP_34cd9d6c.MethArray.Green.R C234192 GBM Methylation Array recurrent_tumor 7316UP-386 205854140148_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b5a41b87-53b1-4836-a68e-b450b02d2f05 fb61820aaf852ce65f1276cafe4accc3 { 'aliquot_tag': 'DUP_34cd9d6c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C234192.DUP_34cd9d6c.MethArray.Red.R C234192 GBM Methylation Array recurrent_tumor 7316UP-386 205854140148_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 b0c6a30e-810a-46c3-bdcb-9391383b91b9 a22e676d136207cd14470f2255ad7f06 { 'aliquot_tag': 'DUP_34cd9d6c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C234192.DUP_34cd9d6c.WGS.R C234192 GBM WGS recurrent_tumor 7316UP-386 7316UP-386.WholeGenome.RP-2158.bam 47559885675 BAM aligned CPTAC3 cf5bb143-0b74-4d0d-a847-0eb11c1ca7a1 745bef1e90150ca2b3396edc36ef0aa9 { 'aliquot_tag': 'DUP_34cd9d6c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } +C234192.DUP_34cd9d6c.WGS.R.hg38 C234192 GBM WGS recurrent_tumor 7316UP-386 718fac36-5644-4dff-a838-c2722578ac31_wgs_gdc_realn.bam 139319538853 BAM harmonized CPTAC3 fa6f4cf6-3d89-48d3-8505-765cfdf77f96 eb0fbbfd2ffd7b38175d84bea23c3065 { 'aliquot_tag': 'DUP_34cd9d6c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C234192.DUP_34cd9d6c.WXS.R C234192 GBM WXS recurrent_tumor 7316UP-386 7316UP-386.WholeExome.RP-1303.bam 22730648817 BAM aligned CPTAC3 443f69b6-ca13-48ca-934b-a1a8e5b89703 221351910a8a5d5bde697e227d49498a { 'aliquot_tag': 'DUP_34cd9d6c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } +C234192.DUP_34cd9d6c.WXS.R.hg38 C234192 GBM WXS recurrent_tumor 7316UP-386 718fac36-5644-4dff-a838-c2722578ac31_wxs_gdc_realn.bam 30881439246 BAM harmonized CPTAC3 3a5e6d4c-ea90-43d6-8f40-c8f954c75eef 76e6f6472697d9236c6dbc6d0f2e99bc { 'aliquot_tag': 'DUP_34cd9d6c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C234192.DUP_35bb8e11.miRNA-Seq.R C234192 GBM miRNA-Seq recurrent_tumor 7316UP-386-1104808 210817_UNC31-K00269_0302_AHLCTHBBXY_GTTTCG_S21_L003_R1_001.unaln.bam 210647428 BAM unaligned CPTAC3 3c87754d-a3ec-49f7-99d8-93c5db1e5e67 4c4c10cad82d6465c4fb6d309880e984 { 'aliquot_tag': 'DUP_35bb8e11', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } -C234192.DUP_35bb8e11.RNA-Seq.R1_L008.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 3276824441 FASTQ R1_L008 unaligned CPTAC3 7d500c68-fbb2-4d68-b501-7cca903b17cf 0cc8ed8d553275159584e75a2ebe6d27 { 'aliquot_tag': 'DUP_35bb8e11', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } -C234192.DUP_35bb8e11.RNA-Seq.R2_L008.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R2_001.fastq.gz 3631457607 FASTQ R2_L008 unaligned CPTAC3 6df26d5c-8487-48eb-aa55-66cb6c2b7da0 4bfd931358597f98ebded555d321642d { 'aliquot_tag': 'DUP_35bb8e11', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C234192.DUP_35bb8e11.miRNA-Seq.R.hg38 C234192 GBM miRNA-Seq recurrent_tumor 7316UP-386-1104808 e1a91e29-39a5-4a32-aac4-d926ddd3db07_mirnaseq_gdc_realn.bam 231162912 BAM harmonized CPTAC3 dcb136eb-e500-4a94-99e6-46f5cb0454e5 a2123427afbb9e65c18b0eabc9acad53 { 'aliquot_tag': 'DUP_35bb8e11', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C234192.DUP_35bb8e11.RNA-Seq.chimeric.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 289e0c97-ef33-4e86-8255-ad09bf3f44cd.rna_seq.chimeric.gdc_realn.bam 31769534 BAM chimeric harmonized CPTAC3 42eef9de-27b5-4b71-b183-3d9e68cb99aa 4b9446aec5b78898a2d22281cdc99a76 { 'aliquot_tag': 'DUP_35bb8e11', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C234192.DUP_35bb8e11.RNA-Seq.genomic.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 289e0c97-ef33-4e86-8255-ad09bf3f44cd.rna_seq.genomic.gdc_realn.bam 10506958714 BAM genomic harmonized CPTAC3 c57c71d3-45fc-4889-a770-d67120fd12d2 415a222ba9ae8213add79f8242f7fca4 { 'aliquot_tag': 'DUP_35bb8e11', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C234192.DUP_35bb8e11.RNA-Seq.R1_L008.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 3276824441 FASTQ R1_L008 unaligned CPTAC3 7d500c68-fbb2-4d68-b501-7cca903b17cf 0cc8ed8d553275159584e75a2ebe6d27 { 'aliquot_tag': 'DUP_35bb8e11', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot', 'read': 'R1', 'lane': 'L008' } +C234192.DUP_35bb8e11.RNA-Seq.R2_L008.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 210713_UNC32-K00270_0291_AHLK5VBBXY_TTATAACC-GATATCGA_S32_L008_R2_001.fastq.gz 3631457607 FASTQ R2_L008 unaligned CPTAC3 6df26d5c-8487-48eb-aa55-66cb6c2b7da0 4bfd931358597f98ebded555d321642d { 'aliquot_tag': 'DUP_35bb8e11', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot', 'read': 'R2', 'lane': 'L008' } +C234192.DUP_35bb8e11.RNA-Seq.transcriptome.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-386-1104808 289e0c97-ef33-4e86-8255-ad09bf3f44cd.rna_seq.transcriptome.gdc_realn.bam 13160264268 BAM transcriptome harmonized CPTAC3 30296540-b3cb-40be-a6c2-5b5f7acf8fdd 35c7f8930ea1ef638db2441e276fdca1 { 'aliquot_tag': 'DUP_35bb8e11', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } C234192.DUP_a92ddca1.MethArray.Green.T C234192 GBM Methylation Array tumor 7316UP-181 205705520023_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9087bd0c-870f-4f08-a08a-7b09d07ee992 6663b656283a87a3e3307ed37ab14b35 { 'aliquot_tag': 'DUP_a92ddca1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C234192.DUP_a92ddca1.MethArray.Red.T C234192 GBM Methylation Array tumor 7316UP-181 205705520023_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 986b983e-2949-4203-8176-2dc0c973c368 5469b4f417044838242b046b3b69921d { 'aliquot_tag': 'DUP_a92ddca1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C234192.DUP_a92ddca1.WGS.T C234192 GBM WGS tumor 7316UP-181 7316UP-181.WholeGenome.RP-2158.bam 56435788273 BAM aligned CPTAC3 9b1b261c-695e-4a48-a3ad-9d7ec0a8f963 2c55f98e0ec18b4b558106797bcbaf38 { 'aliquot_tag': 'DUP_a92ddca1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C234192.DUP_a92ddca1.WGS.T.hg38 C234192 GBM WGS tumor 7316UP-181 4eae5599-7c20-444f-8253-fc4a0195d96f_wgs_gdc_realn.bam 171448754175 BAM harmonized CPTAC3 9d005027-e1bb-44f6-9d63-70a019164acd f544e25249f474a9084bac6a3c8240e1 { 'aliquot_tag': 'DUP_a92ddca1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C234192.DUP_a92ddca1.WXS.T C234192 GBM WXS tumor 7316UP-181 7316UP-181.WholeExome.RP-1303.bam 22982636961 BAM aligned CPTAC3 4474df2a-caa8-4b06-898a-397c1ac6da64 2c5d61ed98dbb5fa832eee0c6954eb41 { 'aliquot_tag': 'DUP_a92ddca1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C234192.DUP_a92ddca1.WXS.T.hg38 C234192 GBM WXS tumor 7316UP-181 4eae5599-7c20-444f-8253-fc4a0195d96f_wxs_gdc_realn.bam 31626617554 BAM harmonized CPTAC3 391bf1c9-43e5-4e52-b602-a8014c059dbc 76722e1a544e5627eccf19f801801a39 { 'aliquot_tag': 'DUP_a92ddca1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C234192.miRNA-Seq.R C234192 GBM miRNA-Seq recurrent_tumor 7316UP-1206-1104797 210817_UNC31-K00269_0302_AHLCTHBBXY_TAGCTT_S35_L002_R1_001.unaln.bam 337424563 BAM unaligned CPTAC3 da2d041c-64f8-43f6-a183-bd7e72cbf810 74ab7b7629739583f329f94ccc219e2e { 'aliquot_tag': 'ALQ_6e6f7273', 'gdc_sample_type': 'Recurrent Tumor' } +C234192.miRNA-Seq.R.hg38 C234192 GBM miRNA-Seq recurrent_tumor 7316UP-1206-1104797 48be9f1d-0af2-4679-bc13-5c2929c33e70_mirnaseq_gdc_realn.bam 396603027 BAM harmonized CPTAC3 cb180774-a0fd-4bc7-ac91-f39af7f22073 a136d3732bd08aecfc28bd6fe994c3e1 { 'aliquot_tag': 'ALQ_6e6f7273', 'gdc_sample_type': 'Recurrent Tumor' } C234192.miRNA-Seq.T C234192 GBM miRNA-Seq tumor 7316UP-181-1104815 210817_UNC31-K00269_0302_AHLCTHBBXY_CAAAAG_S3_L003_R1_001.unaln.bam 364681995 BAM unaligned CPTAC3 5a67cf00-8cc1-44c0-ae73-eea18f081b02 ae10d60d23e649c6352a416d05322297 { 'aliquot_tag': 'ALQ_6e1c17e5', 'gdc_sample_type': 'Primary Tumor' } -C234192.RNA-Seq.R1_L003.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R1_001.fastq.gz 3736027921 FASTQ R1_L003 unaligned CPTAC3 c50ba18b-ea56-4579-a48e-bc82936d96c8 0f714076ff8ce7e1a1fdb40ff2c8f93d { 'aliquot_tag': 'ALQ_6e6f7273', 'gdc_sample_type': 'Recurrent Tumor' } -C234192.RNA-Seq.R1_L008.T C234192 GBM RNA-Seq tumor 7316UP-181-1104815 210713_UNC32-K00270_0291_AHLK5VBBXY_AAGTCCAA-TATGAGTA_S29_L008_R1_001.fastq.gz 3615865895 FASTQ R1_L008 unaligned CPTAC3 928d940f-3a8a-43aa-894f-792e0d1d5468 cbc162fede09e521a538235c9ea9d4e6 { 'aliquot_tag': 'ALQ_6e1c17e5', 'gdc_sample_type': 'Primary Tumor' } -C234192.RNA-Seq.R2_L003.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R2_001.fastq.gz 4022993051 FASTQ R2_L003 unaligned CPTAC3 e1e78f00-8882-40ae-aba4-7ccfd12a4996 e55040492dc7e715c3103a443343026f { 'aliquot_tag': 'ALQ_6e6f7273', 'gdc_sample_type': 'Recurrent Tumor' } -C234192.RNA-Seq.R2_L008.T C234192 GBM RNA-Seq tumor 7316UP-181-1104815 210713_UNC32-K00270_0291_AHLK5VBBXY_AAGTCCAA-TATGAGTA_S29_L008_R2_001.fastq.gz 3963289098 FASTQ R2_L008 unaligned CPTAC3 f419b308-3b44-43cd-8515-43e351c9b2a9 00b70bc3b175d5dcbc54737be6bc11ea { 'aliquot_tag': 'ALQ_6e1c17e5', 'gdc_sample_type': 'Primary Tumor' } +C234192.miRNA-Seq.T.hg38 C234192 GBM miRNA-Seq tumor 7316UP-181-1104815 0e75fd15-2035-496d-9d58-9c7d3fc8b62b_mirnaseq_gdc_realn.bam 415908166 BAM harmonized CPTAC3 a204c481-32de-4cb2-a68e-79dc9a33d63a a520cc79b05f2e27019a745dac2114d9 { 'aliquot_tag': 'ALQ_6e1c17e5', 'gdc_sample_type': 'Primary Tumor' } +C234192.RNA-Seq.chimeric.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 5b9e8a2b-ebe5-4caf-9144-ec6d3ea6c4cd.rna_seq.chimeric.gdc_realn.bam 64226114 BAM chimeric harmonized CPTAC3 ca080da5-cc19-424e-92b4-2d71120af556 fe5c53ed91086e9539aab2b94d418407 { 'aliquot_tag': 'ALQ_6e6f7273', 'gdc_sample_type': 'Recurrent Tumor' } +C234192.RNA-Seq.chimeric.T.hg38 C234192 GBM RNA-Seq tumor 7316UP-181-1104815 87c80914-6a9f-405c-a143-01ccb2423759.rna_seq.chimeric.gdc_realn.bam 51744846 BAM chimeric harmonized CPTAC3 28deee9d-5c29-41a3-b0a5-ce3789712717 4d490bc5350b7eb5bda84c82e339072e { 'aliquot_tag': 'ALQ_6e1c17e5', 'gdc_sample_type': 'Primary Tumor' } +C234192.RNA-Seq.genomic.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 5b9e8a2b-ebe5-4caf-9144-ec6d3ea6c4cd.rna_seq.genomic.gdc_realn.bam 8269927080 BAM genomic harmonized CPTAC3 158def60-2226-4585-a3e7-e68c551de793 2c7f5366754af856bfc9c5350e0668f1 { 'aliquot_tag': 'ALQ_6e6f7273', 'gdc_sample_type': 'Recurrent Tumor' } +C234192.RNA-Seq.genomic.T.hg38 C234192 GBM RNA-Seq tumor 7316UP-181-1104815 87c80914-6a9f-405c-a143-01ccb2423759.rna_seq.genomic.gdc_realn.bam 9553842168 BAM genomic harmonized CPTAC3 0acda018-6eab-45bb-ac39-40f65cecdcd7 3413c73d3058ad4f0e65d19f7f1ef856 { 'aliquot_tag': 'ALQ_6e1c17e5', 'gdc_sample_type': 'Primary Tumor' } +C234192.RNA-Seq.R1_L003.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R1_001.fastq.gz 3736027921 FASTQ R1_L003 unaligned CPTAC3 c50ba18b-ea56-4579-a48e-bc82936d96c8 0f714076ff8ce7e1a1fdb40ff2c8f93d { 'aliquot_tag': 'ALQ_6e6f7273', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L003' } +C234192.RNA-Seq.R1_L008.T C234192 GBM RNA-Seq tumor 7316UP-181-1104815 210713_UNC32-K00270_0291_AHLK5VBBXY_AAGTCCAA-TATGAGTA_S29_L008_R1_001.fastq.gz 3615865895 FASTQ R1_L008 unaligned CPTAC3 928d940f-3a8a-43aa-894f-792e0d1d5468 cbc162fede09e521a538235c9ea9d4e6 { 'aliquot_tag': 'ALQ_6e1c17e5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C234192.RNA-Seq.R2_L003.R C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 210811_UNC31-K00269_0301_AHLLC5BBXY_GGTGAACC-GCGTTGGA_S12_L003_R2_001.fastq.gz 4022993051 FASTQ R2_L003 unaligned CPTAC3 e1e78f00-8882-40ae-aba4-7ccfd12a4996 e55040492dc7e715c3103a443343026f { 'aliquot_tag': 'ALQ_6e6f7273', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L003' } +C234192.RNA-Seq.R2_L008.T C234192 GBM RNA-Seq tumor 7316UP-181-1104815 210713_UNC32-K00270_0291_AHLK5VBBXY_AAGTCCAA-TATGAGTA_S29_L008_R2_001.fastq.gz 3963289098 FASTQ R2_L008 unaligned CPTAC3 f419b308-3b44-43cd-8515-43e351c9b2a9 00b70bc3b175d5dcbc54737be6bc11ea { 'aliquot_tag': 'ALQ_6e1c17e5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C234192.RNA-Seq.transcriptome.R.hg38 C234192 GBM RNA-Seq recurrent_tumor 7316UP-1206-1104797 5b9e8a2b-ebe5-4caf-9144-ec6d3ea6c4cd.rna_seq.transcriptome.gdc_realn.bam 13720404909 BAM transcriptome harmonized CPTAC3 479bb3b7-d7f0-4de3-b9ba-7d3da1d21516 d7a00bb07d8960f49a8c454651aa1379 { 'aliquot_tag': 'ALQ_6e6f7273', 'gdc_sample_type': 'Recurrent Tumor' } +C234192.RNA-Seq.transcriptome.T.hg38 C234192 GBM RNA-Seq tumor 7316UP-181-1104815 87c80914-6a9f-405c-a143-01ccb2423759.rna_seq.transcriptome.gdc_realn.bam 15348891760 BAM transcriptome harmonized CPTAC3 1377c10c-a411-47af-9326-0de1286ffd71 fc9288ca4f4cf94df3f60b643a7af441 { 'aliquot_tag': 'ALQ_6e1c17e5', 'gdc_sample_type': 'Primary Tumor' } C234192.WXS.N C234192 GBM WXS blood_normal 7316UP-386-1105286 7316UP-386-1105286.WholeExome.RP-1303.bam 24199574526 BAM aligned CPTAC3 f7aa4be1-0506-4b92-ab15-2c6aa8e84e10 a76ba70df3378021a952eaf51dd21279 { 'aliquot_tag': 'ALQ_aff1cbad', 'gdc_sample_type': 'Blood Derived Normal' } +C234192.WXS.N.hg38 C234192 GBM WXS blood_normal 7316UP-386-1105286 d8eaf68c-8262-4df9-86f0-853fe53f50da_wxs_gdc_realn.bam 32914041533 BAM harmonized CPTAC3 a4bab68e-9662-4e8a-8b06-8db9204db099 c7322cd652b839f68ee53126ca73de06 { 'aliquot_tag': 'ALQ_aff1cbad', 'gdc_sample_type': 'Blood Derived Normal' } C234192.WXS.R C234192 GBM WXS recurrent_tumor 7316UP-386-1105200 7316UP-386-1105200.WholeExome.RP-1303.bam 20806055854 BAM aligned CPTAC3 7da8daf1-63dc-454c-beae-7c7ddd6a8500 daa94493f545d94e1f2811ebc4522d34 { 'aliquot_tag': 'ALQ_8e4be490', 'gdc_sample_type': 'Recurrent Tumor' } +C234192.WXS.R.hg38 C234192 GBM WXS recurrent_tumor 7316UP-386-1105200 627c4b60-2f6f-4fbf-aed9-2d2d85c7bf5e_wxs_gdc_realn.bam 28225214010 BAM harmonized CPTAC3 a1d7b018-9c49-4102-9ddc-e9dbc8849188 090bdd835c10172092c05858f7790938 { 'aliquot_tag': 'ALQ_8e4be490', 'gdc_sample_type': 'Recurrent Tumor' } C234192.WXS.T C234192 GBM WXS tumor 7316UP-181-1105194 7316UP-181-1105194.WholeExome.RP-1303.bam 25971653894 BAM aligned CPTAC3 b6c516d7-ef12-420e-8bf5-bde06419732f 6c206fd9b0e7b3d6819cd203cea7f2d5 { 'aliquot_tag': 'ALQ_66aff191', 'gdc_sample_type': 'Primary Tumor' } +C234192.WXS.T.hg38 C234192 GBM WXS tumor 7316UP-181-1105194 d774c07e-df68-4037-983e-1b21d267226b_wxs_gdc_realn.bam 35443786397 BAM harmonized CPTAC3 00d428d0-e8fc-4662-a0fa-cabc09e83c20 1aaf8e61a78f3f0f3751fa2e5c9b703e { 'aliquot_tag': 'ALQ_66aff191', 'gdc_sample_type': 'Primary Tumor' } C2415597.DUP_6b347d64.WGS.T C2415597 GBM WGS tumor 7316UP-3213 7316UP-3213.WholeGenome.RP-2158.bam 46717989960 BAM aligned CPTAC3 6d9c3282-901f-4e5d-b88d-83dcb8420cf5 6af921d98ab4e2a69de87a906e701282 { 'aliquot_tag': 'DUP_6b347d64', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C2415597.DUP_6b347d64.WGS.T.hg38 C2415597 GBM WGS tumor 7316UP-3213 756fcc28-8e14-4f0e-8bf7-183faf9eac38_wgs_gdc_realn.bam 125043248439 BAM harmonized CPTAC3 80a726e3-4517-48d1-ae34-183300dc3541 1f617c5562eaf117d5cdc534fdf5aab6 { 'aliquot_tag': 'DUP_6b347d64', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C2415597.DUP_9de3473e.MethArray.Green.R C2415597 GBM Methylation Array recurrent_tumor 7316UP-3301 205854120012_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 761bb9fa-b650-47b4-b493-c99cee85e208 2e05a5f0c43a60872a00d9b838abc221 { 'aliquot_tag': 'DUP_9de3473e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C2415597.DUP_9de3473e.MethArray.Red.R C2415597 GBM Methylation Array recurrent_tumor 7316UP-3301 205854120012_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 2d4a84dc-f721-4129-97a9-a5c795530243 58cf9a92852a304891bfa66e2e8053dd { 'aliquot_tag': 'DUP_9de3473e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C2415597.DUP_9de3473e.WGS.R C2415597 GBM WGS recurrent_tumor 7316UP-3301 7316UP-3301.WholeGenome.RP-2158.bam 40445705826 BAM aligned CPTAC3 5653b18d-31d5-42b5-95f8-94f92d8a9534 13df5b4dca993f2a65df41e61a738b78 { 'aliquot_tag': 'DUP_9de3473e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C2415597.DUP_9de3473e.WGS.R.hg38 C2415597 GBM WGS recurrent_tumor 7316UP-3301 f8beab6f-a02c-4808-9525-1f031d13e85d_wgs_gdc_realn.bam 123926313636 BAM harmonized CPTAC3 da2fff2b-dc60-4c30-a008-70f698887d99 e5f2dfd9a39022a1645ade71c3d743fe { 'aliquot_tag': 'DUP_9de3473e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C2415597.DUP_9de3473e.WXS.R C2415597 GBM WXS recurrent_tumor 7316UP-3301 7316UP-3301.WholeExome.RP-1303.bam 24074428846 BAM aligned CPTAC3 f020ea7e-b765-4680-bb04-a5d01cbb7445 fe3f5c635c9bb25c77c6e6c578813929 { 'aliquot_tag': 'DUP_9de3473e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C2415597.DUP_9de3473e.WXS.R.hg38 C2415597 GBM WXS recurrent_tumor 7316UP-3301 f8beab6f-a02c-4808-9525-1f031d13e85d_wxs_gdc_realn.bam 32493296590 BAM harmonized CPTAC3 aeff0d2c-a961-4604-a89b-00568dd205d5 8c535ab1fbb64a874d9fa5d0babb0c1c { 'aliquot_tag': 'DUP_9de3473e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C2415597.miRNA-Seq.R C2415597 GBM miRNA-Seq recurrent_tumor 7316UP-3301-1104810 210817_UNC31-K00269_0302_AHLCTHBBXY_GAGTGG_S16_L003_R1_001.unaln.bam 261418307 BAM unaligned CPTAC3 7fc389da-b7fc-4765-8e7b-78427f94fb81 422729d1f363c41e592fc0d92b09c7e5 { 'aliquot_tag': 'ALQ_7a5a0673', 'gdc_sample_type': 'Recurrent Tumor' } +C2415597.miRNA-Seq.R.hg38 C2415597 GBM miRNA-Seq recurrent_tumor 7316UP-3301-1104810 cc7c9eed-29f3-4a25-864d-4cd6f8071e96_mirnaseq_gdc_realn.bam 299239405 BAM harmonized CPTAC3 52ea6f91-1b1c-4c5a-b03e-81daa41ef9c0 772343054668900601a8cd5249c5e0ae { 'aliquot_tag': 'ALQ_7a5a0673', 'gdc_sample_type': 'Recurrent Tumor' } C2415597.miRNA-Seq.T C2415597 GBM miRNA-Seq tumor 7316UP-3213-1104802 210817_UNC31-K00269_0302_AHLCTHBBXY_ATGTCA_S45_L003_R1_001.unaln.bam 221800320 BAM unaligned CPTAC3 8246c90e-8b94-45c1-b838-4e352e69693a 0a1226bc33395cd83cf79a7b62c24796 { 'aliquot_tag': 'ALQ_8df5ca66', 'gdc_sample_type': 'Primary Tumor' } -C2415597.RNA-Seq.R1_L004.T C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R1_001.fastq.gz 4016813028 FASTQ R1_L004 unaligned CPTAC3 65a4c75a-7f0b-440c-92db-a907010614d1 2ea4eaa426378eb26463e947e5b887eb { 'aliquot_tag': 'ALQ_8df5ca66', 'gdc_sample_type': 'Primary Tumor' } -C2415597.RNA-Seq.R2_L004.T C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R2_001.fastq.gz 4342338020 FASTQ R2_L004 unaligned CPTAC3 bb7aa747-60b6-4342-aaa4-f076f360b67d 846577caa92152b93354ad27ef5579b6 { 'aliquot_tag': 'ALQ_8df5ca66', 'gdc_sample_type': 'Primary Tumor' } +C2415597.miRNA-Seq.T.hg38 C2415597 GBM miRNA-Seq tumor 7316UP-3213-1104802 356c884a-2197-4da2-89eb-88f60c882772_mirnaseq_gdc_realn.bam 252996886 BAM harmonized CPTAC3 a5e2090f-65d3-4ba3-adff-47f4294e7c92 9b8bd399dcb13d3afdad40bb58350b76 { 'aliquot_tag': 'ALQ_8df5ca66', 'gdc_sample_type': 'Primary Tumor' } +C2415597.RNA-Seq.chimeric.T.hg38 C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 38b1cd29-bfb1-4cb0-8f12-ae08d7791858.rna_seq.chimeric.gdc_realn.bam 51464968 BAM chimeric harmonized CPTAC3 259f1515-9d2f-40a8-ac50-3739e6673220 21881365e78583ef786aa00948af7f53 { 'aliquot_tag': 'ALQ_8df5ca66', 'gdc_sample_type': 'Primary Tumor' } +C2415597.RNA-Seq.genomic.T.hg38 C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 38b1cd29-bfb1-4cb0-8f12-ae08d7791858.rna_seq.genomic.gdc_realn.bam 9463100178 BAM genomic harmonized CPTAC3 81dcb229-7581-4325-a20f-08e0b18337d8 2964a452cf11a7077bbd99c19bd352c6 { 'aliquot_tag': 'ALQ_8df5ca66', 'gdc_sample_type': 'Primary Tumor' } +C2415597.RNA-Seq.R1_L004.T C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R1_001.fastq.gz 4016813028 FASTQ R1_L004 unaligned CPTAC3 65a4c75a-7f0b-440c-92db-a907010614d1 2ea4eaa426378eb26463e947e5b887eb { 'aliquot_tag': 'ALQ_8df5ca66', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C2415597.RNA-Seq.R2_L004.T C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 210811_UNC31-K00269_0301_AHLLC5BBXY_GAATGAGA-GAGGCATT_S15_L004_R2_001.fastq.gz 4342338020 FASTQ R2_L004 unaligned CPTAC3 bb7aa747-60b6-4342-aaa4-f076f360b67d 846577caa92152b93354ad27ef5579b6 { 'aliquot_tag': 'ALQ_8df5ca66', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C2415597.RNA-Seq.transcriptome.T.hg38 C2415597 GBM RNA-Seq tumor 7316UP-3213-1104802 38b1cd29-bfb1-4cb0-8f12-ae08d7791858.rna_seq.transcriptome.gdc_realn.bam 15629869679 BAM transcriptome harmonized CPTAC3 300ed4b2-5404-485b-bc6d-343f79caa015 2bdfc7ed2d2664edecb9ae74a1f921b1 { 'aliquot_tag': 'ALQ_8df5ca66', 'gdc_sample_type': 'Primary Tumor' } C2415597.WGS.N C2415597 GBM WGS blood_normal 7316UP-3213-1105205 7316UP-3213-1105205.WholeGenome.RP-2158.bam 50217161109 BAM aligned CPTAC3 0624d075-1b65-4bab-b6f2-1c9e0a21b6b4 81e1fe5d38e97c7e4c065c12a2fe6c45 { 'aliquot_tag': 'ALQ_a6babd76', 'gdc_sample_type': 'Blood Derived Normal' } +C2415597.WGS.N.hg38 C2415597 GBM WGS blood_normal 7316UP-3213-1105205 919d4703-3f74-4005-8527-b799c88af446_wgs_gdc_realn.bam 151891127132 BAM harmonized CPTAC3 81a1a51b-92a2-4934-b3c7-21d141f6e0c3 f432f85771335baa303dbae8b0665782 { 'aliquot_tag': 'ALQ_a6babd76', 'gdc_sample_type': 'Blood Derived Normal' } C2415597.WGS.R C2415597 GBM WGS recurrent_tumor 7316UP-3301-1105203 7316UP-3301-1105203.WholeGenome.RP-2158.bam 55818050597 BAM aligned CPTAC3 e18c60c3-d0db-4475-ae0d-4c9908273151 76953b913614937c1c73ce8772320fbc { 'aliquot_tag': 'ALQ_4f63843b', 'gdc_sample_type': 'Recurrent Tumor' } +C2415597.WGS.R.hg38 C2415597 GBM WGS recurrent_tumor 7316UP-3301-1105203 a2b4abb1-839e-4763-aa82-c754f118b220_wgs_gdc_realn.bam 167438335099 BAM harmonized CPTAC3 6ca6bc61-c0ba-40ab-b75f-a5bb2602af39 3279499b425a35ba86b1f2ee34922f9f { 'aliquot_tag': 'ALQ_4f63843b', 'gdc_sample_type': 'Recurrent Tumor' } C2415597.WXS.N C2415597 GBM WXS blood_normal 7316UP-3213-1105205 7316UP-3213-1105205.WholeExome.RP-1303.bam 26839308775 BAM aligned CPTAC3 00118ebe-547b-43c0-b0ef-8fd023ad31cd 645c7a2b32506b9b20217d48cf506f36 { 'aliquot_tag': 'ALQ_a6babd76', 'gdc_sample_type': 'Blood Derived Normal' } +C2415597.WXS.N.hg38 C2415597 GBM WXS blood_normal 7316UP-3213-1105205 919d4703-3f74-4005-8527-b799c88af446_wxs_gdc_realn.bam 36750876656 BAM harmonized CPTAC3 dce2d5b9-9319-4e33-8a41-b9ead0147389 293c62a82a1a6e3e665cc6d5500e38de { 'aliquot_tag': 'ALQ_a6babd76', 'gdc_sample_type': 'Blood Derived Normal' } C2415597.WXS.R C2415597 GBM WXS recurrent_tumor 7316UP-3301-1105203 7316UP-3301-1105203.WholeExome.RP-1303.bam 24495516950 BAM aligned CPTAC3 bf176280-c535-4b55-b936-21e7fedcb5de 92171bf6ca581390405d7ada7010b3e6 { 'aliquot_tag': 'ALQ_4f63843b', 'gdc_sample_type': 'Recurrent Tumor' } +C2415597.WXS.R.hg38 C2415597 GBM WXS recurrent_tumor 7316UP-3301-1105203 a2b4abb1-839e-4763-aa82-c754f118b220_wxs_gdc_realn.bam 33287969940 BAM harmonized CPTAC3 40466bdf-bea3-4d9a-92de-729418cd7304 bb271aa6e6c20f2606d25f0eef82c8bf { 'aliquot_tag': 'ALQ_4f63843b', 'gdc_sample_type': 'Recurrent Tumor' } C2415597.WXS.T C2415597 GBM WXS tumor 7316UP-3213-1105267 7316UP-3213-1105267.WholeExome.RP-1303.bam 22767710482 BAM aligned CPTAC3 0abd93c6-12d9-44b5-8d34-77397cbce77f 2d1d773c3bfee1ef5b9471f8f0714c50 { 'aliquot_tag': 'ALQ_1eee7bdc', 'gdc_sample_type': 'Primary Tumor' } +C2415597.WXS.T.hg38 C2415597 GBM WXS tumor 7316UP-3213-1105267 bc166e0c-63e2-409c-a09f-7100fc4d0399_wxs_gdc_realn.bam 30930941832 BAM harmonized CPTAC3 d7016be0-b5fd-4b35-bfcb-b9f68116a669 727548c240b744043835255b03c65b9b { 'aliquot_tag': 'ALQ_1eee7bdc', 'gdc_sample_type': 'Primary Tumor' } C243048.DUP_94a7b89d.MethArray.Green.T C243048 GBM Methylation Array tumor 7316UP-213 205555380040_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 52b82f22-4b5b-42a6-9fc3-77dd32a3f8f7 bb109d79b16ccdaccb28ac0e25dc0a28 { 'aliquot_tag': 'DUP_94a7b89d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C243048.DUP_94a7b89d.MethArray.Red.T C243048 GBM Methylation Array tumor 7316UP-213 205555380040_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 685bb2b2-efbd-4687-b197-07900da31d53 9c96e31e74e37d97a3f3045190d6bce7 { 'aliquot_tag': 'DUP_94a7b89d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C243048.DUP_94a7b89d.WGS.T C243048 GBM WGS tumor 7316UP-213 7316UP-213.WholeGenome.RP-2158.bam 61469132170 BAM aligned CPTAC3 f60141d2-88a5-4976-9b89-ab2648c18585 321bfdce2e3950202d1dce683a9d22d5 { 'aliquot_tag': 'DUP_94a7b89d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C243048.DUP_94a7b89d.WGS.T.hg38 C243048 GBM WGS tumor 7316UP-213 e4e6f65e-c590-48d7-8fba-1bfc0f10d029_wgs_gdc_realn.bam 186367798316 BAM harmonized CPTAC3 fc5d3bd7-69e2-435f-b278-290e6237aa47 d796aafe8acba81e478c8ead8868d9f8 { 'aliquot_tag': 'DUP_94a7b89d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C243048.DUP_94a7b89d.WXS.T C243048 GBM WXS tumor 7316UP-213 7316UP-213.WholeExome.RP-1303.bam 23332361777 BAM aligned CPTAC3 952c667a-4096-42a6-892b-d0e81731560f d59403f95ea36fb092e55b68f82e9278 { 'aliquot_tag': 'DUP_94a7b89d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C243048.DUP_94a7b89d.WXS.T.hg38 C243048 GBM WXS tumor 7316UP-213 e4e6f65e-c590-48d7-8fba-1bfc0f10d029_wxs_gdc_realn.bam 31637926754 BAM harmonized CPTAC3 ba5c13e9-a560-4436-90f2-011d77ee7531 55f5ee36af09a09db0b8b44f2809c2e8 { 'aliquot_tag': 'DUP_94a7b89d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C243048.miRNA-Seq.R C243048 GBM miRNA-Seq recurrent_tumor 7316UP-1282-1104796 220125_UNC32-K00270_0311_AHMNYYBBXY_CTCAGA_S13_L002_R1_001.unaln.bam 283713764 BAM unaligned CPTAC3 03d33d85-051a-47ae-9c8b-b89b78fd4193 e1a8739e309877b12cafb4bcc0635e69 { 'aliquot_tag': 'ALQ_5753531d', 'gdc_sample_type': 'Recurrent Tumor' } +C243048.miRNA-Seq.R.hg38 C243048 GBM miRNA-Seq recurrent_tumor 7316UP-1282-1104796 d05db3d5-b6be-4234-a3d2-7082bf8fa3d1_mirnaseq_gdc_realn.bam 322382405 BAM harmonized CPTAC3 b2965833-263a-4522-8383-619c45de06de c3f9e5b4f3657c05e5d8061cea10507b { 'aliquot_tag': 'ALQ_5753531d', 'gdc_sample_type': 'Recurrent Tumor' } C243048.miRNA-Seq.T C243048 GBM miRNA-Seq tumor 7316UP-213-1104783 210817_UNC31-K00269_0302_AHLCTHBBXY_TATAAT_S36_L002_R1_001.unaln.bam 247388747 BAM unaligned CPTAC3 596d52ea-e0db-433d-a082-0ea1d6919f9b 9da4910950727769133ad013195fddd9 { 'aliquot_tag': 'ALQ_16e02be9', 'gdc_sample_type': 'Primary Tumor' } -C243048.RNA-Seq.R1_L003.R C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R1_001.fastq.gz 3441784538 FASTQ R1_L003 unaligned CPTAC3 363afde2-4960-4b58-9fb5-783487373231 93559bf7620c9800fea14ec277199af0 { 'aliquot_tag': 'ALQ_5753531d', 'gdc_sample_type': 'Recurrent Tumor' } -C243048.RNA-Seq.R1_L007.T C243048 GBM RNA-Seq tumor 7316UP-213-1104783 210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R1_001.fastq.gz 4481092171 FASTQ R1_L007 unaligned CPTAC3 098febb3-ede7-4533-b9f9-043c8d664e30 90390ef8dce83b1459486e2e9262deca { 'aliquot_tag': 'ALQ_16e02be9', 'gdc_sample_type': 'Primary Tumor' } -C243048.RNA-Seq.R2_L003.R C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R2_001.fastq.gz 3779949435 FASTQ R2_L003 unaligned CPTAC3 94c8d23c-057f-4075-9b03-ebddc6c46e7c 3f85268ab56b70853e9635c77985f37c { 'aliquot_tag': 'ALQ_5753531d', 'gdc_sample_type': 'Recurrent Tumor' } -C243048.RNA-Seq.R2_L007.T C243048 GBM RNA-Seq tumor 7316UP-213-1104783 210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R2_001.fastq.gz 4627017636 FASTQ R2_L007 unaligned CPTAC3 c7aab69b-f720-4820-9589-e1e033ef3ee3 2b427354fd9539ad44c24001b3e06ef1 { 'aliquot_tag': 'ALQ_16e02be9', 'gdc_sample_type': 'Primary Tumor' } +C243048.miRNA-Seq.T.hg38 C243048 GBM miRNA-Seq tumor 7316UP-213-1104783 5a9c3046-135c-42ca-87c0-9e0456e85741_mirnaseq_gdc_realn.bam 276549197 BAM harmonized CPTAC3 d4df28d9-e66c-43a3-b2ae-a570abb38f71 3e54ecac5930fa3621dddc1de38368b4 { 'aliquot_tag': 'ALQ_16e02be9', 'gdc_sample_type': 'Primary Tumor' } +C243048.RNA-Seq.chimeric.R.hg38 C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 dfa2f000-a25f-4fba-a811-ecda0f6e82ee.rna_seq.chimeric.gdc_realn.bam 118922839 BAM chimeric harmonized CPTAC3 ccea4c60-5922-42dc-975c-9ab3d4ae1b6e d0e2e69c4b7621f9ed5cf2c926c8da49 { 'aliquot_tag': 'ALQ_5753531d', 'gdc_sample_type': 'Recurrent Tumor' } +C243048.RNA-Seq.chimeric.T.hg38 C243048 GBM RNA-Seq tumor 7316UP-213-1104783 ce2fdfbf-dbf4-44df-a57e-4b55dc211462.rna_seq.chimeric.gdc_realn.bam 150848868 BAM chimeric harmonized CPTAC3 fcea2879-a76b-4382-bff1-6ee2e8f2a204 0aaef53ddd596db7d8f2eacfc809ff5e { 'aliquot_tag': 'ALQ_16e02be9', 'gdc_sample_type': 'Primary Tumor' } +C243048.RNA-Seq.genomic.R.hg38 C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 dfa2f000-a25f-4fba-a811-ecda0f6e82ee.rna_seq.genomic.gdc_realn.bam 8787059735 BAM genomic harmonized CPTAC3 2d6b8c8a-4796-4ae3-a41a-8c406f5f01dd 2aa4ff0e257c08aa8d657c441a29697e { 'aliquot_tag': 'ALQ_5753531d', 'gdc_sample_type': 'Recurrent Tumor' } +C243048.RNA-Seq.genomic.T.hg38 C243048 GBM RNA-Seq tumor 7316UP-213-1104783 ce2fdfbf-dbf4-44df-a57e-4b55dc211462.rna_seq.genomic.gdc_realn.bam 9759936611 BAM genomic harmonized CPTAC3 822ba9f2-f945-486f-b42a-3e644ed48a6f 7a95e0fb48216a429726d96bf6752d02 { 'aliquot_tag': 'ALQ_16e02be9', 'gdc_sample_type': 'Primary Tumor' } +C243048.RNA-Seq.R1_L003.R C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R1_001.fastq.gz 3441784538 FASTQ R1_L003 unaligned CPTAC3 363afde2-4960-4b58-9fb5-783487373231 93559bf7620c9800fea14ec277199af0 { 'aliquot_tag': 'ALQ_5753531d', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L003' } +C243048.RNA-Seq.R1_L007.T C243048 GBM RNA-Seq tumor 7316UP-213-1104783 210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R1_001.fastq.gz 4481092171 FASTQ R1_L007 unaligned CPTAC3 098febb3-ede7-4533-b9f9-043c8d664e30 90390ef8dce83b1459486e2e9262deca { 'aliquot_tag': 'ALQ_16e02be9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C243048.RNA-Seq.R2_L003.R C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 210811_UNC31-K00269_0301_AHLLC5BBXY_ATATCTCG-ATCTTAGT_S10_L003_R2_001.fastq.gz 3779949435 FASTQ R2_L003 unaligned CPTAC3 94c8d23c-057f-4075-9b03-ebddc6c46e7c 3f85268ab56b70853e9635c77985f37c { 'aliquot_tag': 'ALQ_5753531d', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L003' } +C243048.RNA-Seq.R2_L007.T C243048 GBM RNA-Seq tumor 7316UP-213-1104783 210713_UNC32-K00270_0291_AHLK5VBBXY_CCAAGTCT-AAGGATGA_S28_L007_R2_001.fastq.gz 4627017636 FASTQ R2_L007 unaligned CPTAC3 c7aab69b-f720-4820-9589-e1e033ef3ee3 2b427354fd9539ad44c24001b3e06ef1 { 'aliquot_tag': 'ALQ_16e02be9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C243048.RNA-Seq.transcriptome.R.hg38 C243048 GBM RNA-Seq recurrent_tumor 7316UP-1282-1104796 dfa2f000-a25f-4fba-a811-ecda0f6e82ee.rna_seq.transcriptome.gdc_realn.bam 9875620470 BAM transcriptome harmonized CPTAC3 90a85fcb-025e-46eb-9afc-22cf1846d9a3 9fd822ea75aad294c3d89acc88f0ce2b { 'aliquot_tag': 'ALQ_5753531d', 'gdc_sample_type': 'Recurrent Tumor' } +C243048.RNA-Seq.transcriptome.T.hg38 C243048 GBM RNA-Seq tumor 7316UP-213-1104783 ce2fdfbf-dbf4-44df-a57e-4b55dc211462.rna_seq.transcriptome.gdc_realn.bam 16610767095 BAM transcriptome harmonized CPTAC3 53c57a7e-e839-47be-bf28-ab94eb0bcb4f cb28b5b4f516a8414de224c1eccc16ef { 'aliquot_tag': 'ALQ_16e02be9', 'gdc_sample_type': 'Primary Tumor' } C243048.WGS.N C243048 GBM WGS blood_normal 7316UP-1282-1105206 7316UP-1282-1105206.WholeGenome.RP-2158.bam 45626778138 BAM aligned CPTAC3 27ab3f0c-0f11-47a1-a9db-7d4672351791 22e72368489fa70abf16f8c73b729136 { 'aliquot_tag': 'ALQ_38e64dda', 'gdc_sample_type': 'Blood Derived Normal' } +C243048.WGS.N.hg38 C243048 GBM WGS blood_normal 7316UP-1282-1105206 09888360-288f-45c9-9786-c44e6b9d9b58_wgs_gdc_realn.bam 138983449186 BAM harmonized CPTAC3 f5977d12-989d-4216-a674-474170a62e63 ca24f9765b5b07acf1d5554a81a4eb31 { 'aliquot_tag': 'ALQ_38e64dda', 'gdc_sample_type': 'Blood Derived Normal' } C243048.WGS.R C243048 GBM WGS recurrent_tumor 7316UP-1282-1105261 7316UP-1282-1105261.WholeGenome.RP-2158.bam 42877964474 BAM aligned CPTAC3 72db3c9f-efad-4791-b6d5-eec918651a42 28c94287dfe51f64cb70f4b7cccccd6a { 'aliquot_tag': 'ALQ_f0d87fff', 'gdc_sample_type': 'Recurrent Tumor' } +C243048.WGS.R.hg38 C243048 GBM WGS recurrent_tumor 7316UP-1282-1105261 7a0bdee2-9e09-4c49-b4bb-34e1b8ca7d0c_wgs_gdc_realn.bam 123519800289 BAM harmonized CPTAC3 d38bdf35-5960-4c0c-963e-00dd73d155ef 6bb3fe974f58278c9b24b2dbfa6194e0 { 'aliquot_tag': 'ALQ_f0d87fff', 'gdc_sample_type': 'Recurrent Tumor' } C243048.WGS.T C243048 GBM WGS tumor 7316UP-213-1105246 7316UP-213-1105246.WholeGenome.RP-2158.bam 52268981914 BAM aligned CPTAC3 142d30eb-d2e2-4c33-8414-f2e9c84866ed 0d322df9cea5e94661c1167f487c7ecb { 'aliquot_tag': 'ALQ_744835e4', 'gdc_sample_type': 'Primary Tumor' } +C243048.WGS.T.hg38 C243048 GBM WGS tumor 7316UP-213-1105246 6c5fd8de-99ba-4d63-8dd6-7587d7e72478_wgs_gdc_realn.bam 151231520143 BAM harmonized CPTAC3 e7f1591c-6ecb-4af1-a23d-5a38754f57b9 18e114022f5d853343634563f5008c82 { 'aliquot_tag': 'ALQ_744835e4', 'gdc_sample_type': 'Primary Tumor' } C243048.WXS.N C243048 GBM WXS blood_normal 7316UP-1282-1105206 7316UP-1282-1105206.WholeExome.RP-1303.bam 20741894205 BAM aligned CPTAC3 115a4ff0-cdd2-416e-95a5-1d5cf3fc1fb8 eca3dbe940600a2c789d0e3be9e93d3d { 'aliquot_tag': 'ALQ_38e64dda', 'gdc_sample_type': 'Blood Derived Normal' } +C243048.WXS.N.hg38 C243048 GBM WXS blood_normal 7316UP-1282-1105206 09888360-288f-45c9-9786-c44e6b9d9b58_wxs_gdc_realn.bam 28402330953 BAM harmonized CPTAC3 8a82aa6f-8b08-4afa-8518-9a26dd06c832 2452f459bd2df60492cbba0c8d19887c { 'aliquot_tag': 'ALQ_38e64dda', 'gdc_sample_type': 'Blood Derived Normal' } C243048.WXS.R C243048 GBM WXS recurrent_tumor 7316UP-1282-1105261 7316UP-1282-1105261.WholeExome.RP-1303.bam 25962713150 BAM aligned CPTAC3 cbd7c1e2-4e4a-42d8-9344-eb10d2c05922 4f05bbdb3b13dd01e751614a274e12ae { 'aliquot_tag': 'ALQ_f0d87fff', 'gdc_sample_type': 'Recurrent Tumor' } +C243048.WXS.R.hg38 C243048 GBM WXS recurrent_tumor 7316UP-1282-1105261 7a0bdee2-9e09-4c49-b4bb-34e1b8ca7d0c_wxs_gdc_realn.bam 35071713175 BAM harmonized CPTAC3 52e8d865-92af-463f-8d7e-5c5580d8b31f 0e7c44d3c37b05aead22814ddbb5fa68 { 'aliquot_tag': 'ALQ_f0d87fff', 'gdc_sample_type': 'Recurrent Tumor' } C243048.WXS.T C243048 GBM WXS tumor 7316UP-213-1105246 7316UP-213-1105246.WholeExome.RP-1303.bam 29270789494 BAM aligned CPTAC3 13cd0048-3145-4c19-be89-24bde2ca1da6 3d5ce2dab2f7a3db785e00a38c6a7b62 { 'aliquot_tag': 'ALQ_744835e4', 'gdc_sample_type': 'Primary Tumor' } +C243048.WXS.T.hg38 C243048 GBM WXS tumor 7316UP-213-1105246 6c5fd8de-99ba-4d63-8dd6-7587d7e72478_wxs_gdc_realn.bam 39637473887 BAM harmonized CPTAC3 8bdfe531-ae92-49f4-87c0-02ee2ad09779 43befd5e6a5d038398510680d7bd10b5 { 'aliquot_tag': 'ALQ_744835e4', 'gdc_sample_type': 'Primary Tumor' } C243909.DUP_74725183.MethArray.Green.T C243909 GBM Methylation Array tumor 7316UP-219 205705520032_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6e3cf174-072b-459b-9eda-bff7d753af77 86b3ef18a85c1b9017470f67d5b9ac87 { 'aliquot_tag': 'DUP_74725183', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C243909.DUP_74725183.MethArray.Red.T C243909 GBM Methylation Array tumor 7316UP-219 205705520032_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 0fbba5f6-90e0-47b5-96af-27f89ed93727 10000caf15718550a3869d169e189168 { 'aliquot_tag': 'DUP_74725183', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C243909.DUP_74725183.WGS.T C243909 GBM WGS tumor 7316UP-219 7316UP-219.WholeGenome.RP-2158.bam 52714327427 BAM aligned CPTAC3 c5ffcd00-ea30-4616-8b67-a26c7fea6802 e28ddb74754aaa304a972daebc9b6f05 { 'aliquot_tag': 'DUP_74725183', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C243909.DUP_74725183.WGS.T.hg38 C243909 GBM WGS tumor 7316UP-219 d013c55d-d3bd-488f-95cd-6c6e9228d817_wgs_gdc_realn.bam 154834136196 BAM harmonized CPTAC3 17a9a485-58c1-4724-a7ca-62cdbceabac0 520bd3d14a159061e99e55308130745c { 'aliquot_tag': 'DUP_74725183', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C243909.DUP_74725183.WXS.T C243909 GBM WXS tumor 7316UP-219 7316UP-219.WholeExome.RP-1303.bam 27485029046 BAM aligned CPTAC3 65aea2ff-8477-463c-91eb-14b62c217e27 1f55e2e7a4d0da953e44275b63f1d071 { 'aliquot_tag': 'DUP_74725183', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C243909.DUP_74725183.WXS.T.hg38 C243909 GBM WXS tumor 7316UP-219 d013c55d-d3bd-488f-95cd-6c6e9228d817_wxs_gdc_realn.bam 37111751144 BAM harmonized CPTAC3 fff94d78-afc1-4c90-9e46-7d90e2f05b5f 0b4982a9759a847be66a9571c3a911af { 'aliquot_tag': 'DUP_74725183', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C243909.DUP_a88bda53.MethArray.Green.R C243909 GBM Methylation Array recurrent_tumor 7316UP-485 205854150029_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 34c8c910-6b6c-4c28-99b9-b40ec9783c89 28ebf2522af1a8d5d69904acda1cc70d { 'aliquot_tag': 'DUP_a88bda53', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C243909.DUP_a88bda53.MethArray.Red.R C243909 GBM Methylation Array recurrent_tumor 7316UP-485 205854150029_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 53f3efef-5605-48f6-9ec1-e5bccfb0c938 a9cd7bc80b05ac7c912d1105f4112a97 { 'aliquot_tag': 'DUP_a88bda53', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C243909.DUP_a88bda53.WGS.R C243909 GBM WGS recurrent_tumor 7316UP-485 7316UP-485.WholeGenome.RP-2158.bam 56426148983 BAM aligned CPTAC3 e62472d9-0680-4d19-be0f-59087d3ae5d8 77ee92da66a3ddd288a209ebfbc82a85 { 'aliquot_tag': 'DUP_a88bda53', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C243909.DUP_a88bda53.WGS.R.hg38 C243909 GBM WGS recurrent_tumor 7316UP-485 1dec43db-5c7f-401c-a558-bb9ba1bbec31_wgs_gdc_realn.bam 169112842557 BAM harmonized CPTAC3 50e449fa-badd-4c24-9f55-27d5ee51f76d bf739d1963fddfbb8fa5c3ff980a3fc2 { 'aliquot_tag': 'DUP_a88bda53', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C243909.DUP_a88bda53.WXS.R C243909 GBM WXS recurrent_tumor 7316UP-485 7316UP-485.WholeExome.RP-1303.bam 14857742498 BAM aligned CPTAC3 1df0c862-5d9b-4eef-948d-684bd79c2ffb eb3b8d7d6c31c06329fbca0add2a2928 { 'aliquot_tag': 'DUP_a88bda53', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C243909.DUP_a88bda53.WXS.R.hg38 C243909 GBM WXS recurrent_tumor 7316UP-485 1dec43db-5c7f-401c-a558-bb9ba1bbec31_wxs_gdc_realn.bam 20832210812 BAM harmonized CPTAC3 deabc5a0-a029-492c-ad8a-ee4a70087d40 efefa8ca6213f004af7e64ae8d832345 { 'aliquot_tag': 'DUP_a88bda53', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C243909.miRNA-Seq.R C243909 GBM miRNA-Seq recurrent_tumor 7316UP-485-1104772 210817_UNC31-K00269_0302_AHLCTHBBXY_CAGGCG_S8_L001_R1_001.unaln.bam 299105296 BAM unaligned CPTAC3 fd7b50a5-0baa-47c1-806e-57a047867d69 d35f4485d829746c2cf806489f48a013 { 'aliquot_tag': 'ALQ_81c59fb3', 'gdc_sample_type': 'Recurrent Tumor' } +C243909.miRNA-Seq.R.hg38 C243909 GBM miRNA-Seq recurrent_tumor 7316UP-485-1104772 9c13cdcc-aaa0-4d11-92a0-c625ed228c94_mirnaseq_gdc_realn.bam 341848089 BAM harmonized CPTAC3 cc79e105-6d2b-45a1-8089-e59ed173e222 079add719e971dff6333e5332f064d80 { 'aliquot_tag': 'ALQ_81c59fb3', 'gdc_sample_type': 'Recurrent Tumor' } C243909.miRNA-Seq.T C243909 GBM miRNA-Seq tumor 7316UP-219-1104778 210817_UNC31-K00269_0302_AHLCTHBBXY_CTATAC_S14_L001_R1_001.unaln.bam 178291052 BAM unaligned CPTAC3 1f9bdb50-0ce4-4b83-8374-4ba3e3283372 c65997746e5f7504bab4be6708c94591 { 'aliquot_tag': 'ALQ_93846430', 'gdc_sample_type': 'Primary Tumor' } -C243909.RNA-Seq.R1_L006.T C243909 GBM RNA-Seq tumor 7316UP-219-1104778 210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R1_001.fastq.gz 3996224097 FASTQ R1_L006 unaligned CPTAC3 8bfdab73-70f3-4d2b-8e02-8080bd13b2e9 895870b0856ed5f1a61597cf0351caec { 'aliquot_tag': 'ALQ_93846430', 'gdc_sample_type': 'Primary Tumor' } -C243909.RNA-Seq.R1_L007.R C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R1_001.fastq.gz 3937677388 FASTQ R1_L007 unaligned CPTAC3 b70c2c1b-2b9b-4a2b-99b9-da9e0735ee4d a97f8bdf42ac59123583f8489d8390be { 'aliquot_tag': 'ALQ_81c59fb3', 'gdc_sample_type': 'Recurrent Tumor' } -C243909.RNA-Seq.R2_L006.T C243909 GBM RNA-Seq tumor 7316UP-219-1104778 210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R2_001.fastq.gz 4320994288 FASTQ R2_L006 unaligned CPTAC3 88b1f7e9-068a-472e-bfd3-7b557881e6f9 afa333c33141fb786ee55df2d19d2ab7 { 'aliquot_tag': 'ALQ_93846430', 'gdc_sample_type': 'Primary Tumor' } -C243909.RNA-Seq.R2_L007.R C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R2_001.fastq.gz 4036597415 FASTQ R2_L007 unaligned CPTAC3 71ed75b3-d868-4335-b995-535c8d4f07c0 f1ef4a273848085f7986a3ee478a88c4 { 'aliquot_tag': 'ALQ_81c59fb3', 'gdc_sample_type': 'Recurrent Tumor' } +C243909.miRNA-Seq.T.hg38 C243909 GBM miRNA-Seq tumor 7316UP-219-1104778 d01c8619-4be8-4420-ada0-60392a580e7f_mirnaseq_gdc_realn.bam 192115100 BAM harmonized CPTAC3 1d12e2ba-27ce-4f32-995c-67b4d1410c50 1ae9b4f88f8fc6b7e903b0454c8cec91 { 'aliquot_tag': 'ALQ_93846430', 'gdc_sample_type': 'Primary Tumor' } +C243909.RNA-Seq.chimeric.R.hg38 C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 272607b5-073b-4a68-bc64-d5ab45fa66f4.rna_seq.chimeric.gdc_realn.bam 25850563 BAM chimeric harmonized CPTAC3 c577721e-485b-4e20-9d07-919ac8871392 6cacec3c4c69963a6152edd6c6c53d92 { 'aliquot_tag': 'ALQ_81c59fb3', 'gdc_sample_type': 'Recurrent Tumor' } +C243909.RNA-Seq.chimeric.T.hg38 C243909 GBM RNA-Seq tumor 7316UP-219-1104778 e2012f7a-527f-479f-86b7-0c62e05f81f8.rna_seq.chimeric.gdc_realn.bam 85465820 BAM chimeric harmonized CPTAC3 47567744-d950-4cb5-9047-5f4c20a11578 3a7c9b0d25232c0cfe7d4c542a2f4e08 { 'aliquot_tag': 'ALQ_93846430', 'gdc_sample_type': 'Primary Tumor' } +C243909.RNA-Seq.genomic.R.hg38 C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 272607b5-073b-4a68-bc64-d5ab45fa66f4.rna_seq.genomic.gdc_realn.bam 9096132246 BAM genomic harmonized CPTAC3 2561c9e4-45b1-4167-90ff-893804ca1fc4 562ce5ad3b1553f607872b82e4c40cd3 { 'aliquot_tag': 'ALQ_81c59fb3', 'gdc_sample_type': 'Recurrent Tumor' } +C243909.RNA-Seq.genomic.T.hg38 C243909 GBM RNA-Seq tumor 7316UP-219-1104778 e2012f7a-527f-479f-86b7-0c62e05f81f8.rna_seq.genomic.gdc_realn.bam 8596757364 BAM genomic harmonized CPTAC3 a973f0e9-1f4b-480d-8417-4a6d90b8ebd3 462ca65a1cb3796f571508c8b87e3406 { 'aliquot_tag': 'ALQ_93846430', 'gdc_sample_type': 'Primary Tumor' } +C243909.RNA-Seq.R1_L006.T C243909 GBM RNA-Seq tumor 7316UP-219-1104778 210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R1_001.fastq.gz 3996224097 FASTQ R1_L006 unaligned CPTAC3 8bfdab73-70f3-4d2b-8e02-8080bd13b2e9 895870b0856ed5f1a61597cf0351caec { 'aliquot_tag': 'ALQ_93846430', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C243909.RNA-Seq.R1_L007.R C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R1_001.fastq.gz 3937677388 FASTQ R1_L007 unaligned CPTAC3 b70c2c1b-2b9b-4a2b-99b9-da9e0735ee4d a97f8bdf42ac59123583f8489d8390be { 'aliquot_tag': 'ALQ_81c59fb3', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L007' } +C243909.RNA-Seq.R2_L006.T C243909 GBM RNA-Seq tumor 7316UP-219-1104778 210713_UNC32-K00270_0291_AHLK5VBBXY_TCTCTACT-CGCGGTTC_S24_L006_R2_001.fastq.gz 4320994288 FASTQ R2_L006 unaligned CPTAC3 88b1f7e9-068a-472e-bfd3-7b557881e6f9 afa333c33141fb786ee55df2d19d2ab7 { 'aliquot_tag': 'ALQ_93846430', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C243909.RNA-Seq.R2_L007.R C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 210713_UNC32-K00270_0291_AHLK5VBBXY_CAAGCTAG-ACATAGCG_S27_L007_R2_001.fastq.gz 4036597415 FASTQ R2_L007 unaligned CPTAC3 71ed75b3-d868-4335-b995-535c8d4f07c0 f1ef4a273848085f7986a3ee478a88c4 { 'aliquot_tag': 'ALQ_81c59fb3', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L007' } +C243909.RNA-Seq.transcriptome.R.hg38 C243909 GBM RNA-Seq recurrent_tumor 7316UP-485-1104772 272607b5-073b-4a68-bc64-d5ab45fa66f4.rna_seq.transcriptome.gdc_realn.bam 16642488599 BAM transcriptome harmonized CPTAC3 b6fdc7c6-91e2-4ad7-bc08-03b6e3cead5e 1f1d7db0c196ef043ca1199ba88fdc5a { 'aliquot_tag': 'ALQ_81c59fb3', 'gdc_sample_type': 'Recurrent Tumor' } +C243909.RNA-Seq.transcriptome.T.hg38 C243909 GBM RNA-Seq tumor 7316UP-219-1104778 e2012f7a-527f-479f-86b7-0c62e05f81f8.rna_seq.transcriptome.gdc_realn.bam 16797632365 BAM transcriptome harmonized CPTAC3 baac4c10-b397-46eb-a867-83372eee2d55 d4940a1a62c747d142b1e8ae0ed9c208 { 'aliquot_tag': 'ALQ_93846430', 'gdc_sample_type': 'Primary Tumor' } C243909.WGS.T C243909 GBM WGS tumor 7316UP-219-1105241 7316UP-219-1105241.WholeGenome.RP-2158.bam 56915003249 BAM aligned CPTAC3 54da4592-2a1c-4696-87e4-a0b8f2b0eaed 1f6438cd41793624a477b9365b64e503 { 'aliquot_tag': 'ALQ_7f022ad9', 'gdc_sample_type': 'Primary Tumor' } +C243909.WGS.T.hg38 C243909 GBM WGS tumor 7316UP-219-1105241 87b93eca-6649-48fe-8311-56853e65a862_wgs_gdc_realn.bam 169274155921 BAM harmonized CPTAC3 71a00fb2-0e73-4980-88e1-ef84aaa36967 7928cb710bf51a4f89d4e849a94f0bea { 'aliquot_tag': 'ALQ_7f022ad9', 'gdc_sample_type': 'Primary Tumor' } C243909.WXS.N C243909 GBM WXS blood_normal 7316UP-219-1105279 7316UP-219-1105279.WholeExome.RP-1303.bam 28502225983 BAM aligned CPTAC3 d290276a-8306-4336-921a-16e61bdc4ead edcb9ca772b5efa4d7e7aa98e9bdcecc { 'aliquot_tag': 'ALQ_5af4f128', 'gdc_sample_type': 'Blood Derived Normal' } +C243909.WXS.N.hg38 C243909 GBM WXS blood_normal 7316UP-219-1105279 20ba330f-7c79-4384-b682-3ba33e885f88_wxs_gdc_realn.bam 38598238526 BAM harmonized CPTAC3 3dd2f03b-0318-4a8e-b8b6-531f33492686 91ad87884e692a1fa85f4d1c93380edc { 'aliquot_tag': 'ALQ_5af4f128', 'gdc_sample_type': 'Blood Derived Normal' } C243909.WXS.R C243909 GBM WXS recurrent_tumor 7316UP-485-1105235 7316UP-485-1105235.WholeExome.RP-1303.bam 23297906342 BAM aligned CPTAC3 abe1406a-385e-4b82-bbe8-aac969c91966 0c2c2a852f2fab6e971960bc9f11754e { 'aliquot_tag': 'ALQ_c5ba6a9a', 'gdc_sample_type': 'Recurrent Tumor' } +C243909.WXS.R.hg38 C243909 GBM WXS recurrent_tumor 7316UP-485-1105235 5f67efbe-9bae-4857-9fd4-bb841ba534b4_wxs_gdc_realn.bam 31929269201 BAM harmonized CPTAC3 0d7be0a5-6d05-4f07-aad8-e54e2cf4d39e 12f99601414ba1401ff7177df87c3395 { 'aliquot_tag': 'ALQ_c5ba6a9a', 'gdc_sample_type': 'Recurrent Tumor' } C243909.WXS.T C243909 GBM WXS tumor 7316UP-219-1105241 7316UP-219-1105241.WholeExome.RP-1303.bam 22953350618 BAM aligned CPTAC3 96c59667-865e-40c1-8dd9-cd08e128daeb 1f248af4f100a25c1ade22e8163687fc { 'aliquot_tag': 'ALQ_7f022ad9', 'gdc_sample_type': 'Primary Tumor' } +C243909.WXS.T.hg38 C243909 GBM WXS tumor 7316UP-219-1105241 87b93eca-6649-48fe-8311-56853e65a862_wxs_gdc_realn.bam 31562155891 BAM harmonized CPTAC3 c7bd5850-d12c-44e5-ab30-20b39a264488 ebe20581b4419d4c68f836313e136391 { 'aliquot_tag': 'ALQ_7f022ad9', 'gdc_sample_type': 'Primary Tumor' } C247230.DUP_aa190bd.MethArray.Green.T C247230 GBM Methylation Array tumor 7316UP-8 205854150029_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 597a93d3-033b-4efc-b7c7-7b7628f9d4c7 c936ea2788968a5d6e68c2f32854e1fb { 'aliquot_tag': 'DUP_aa190bd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C247230.DUP_aa190bd.MethArray.Red.T C247230 GBM Methylation Array tumor 7316UP-8 205854150029_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 223ccfec-3713-4643-9c25-d02ff6f18c30 90fe9700ed81d0ee0361f4287b865bea { 'aliquot_tag': 'DUP_aa190bd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C247230.DUP_aa190bd.WGS.T C247230 GBM WGS tumor 7316UP-8 7316UP-8.WholeGenome.RP-2158.bam 53905269524 BAM aligned CPTAC3 65b28340-14d4-4169-a018-5edd58793a32 9aa1a40a87adf1df7f02a06060b6ddfe { 'aliquot_tag': 'DUP_aa190bd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C247230.DUP_aa190bd.WGS.T.hg38 C247230 GBM WGS tumor 7316UP-8 44d33820-4b25-4059-b10b-6f7b9038ed39_wgs_gdc_realn.bam 159958839057 BAM harmonized CPTAC3 a32f7c17-1eca-4dcd-92e8-f5b8068d72e7 c191e5bbb6a84be5bec8aaa8f04f1417 { 'aliquot_tag': 'DUP_aa190bd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C247230.DUP_aa190bd.WXS.T C247230 GBM WXS tumor 7316UP-8 7316UP-8.WholeExome.RP-1303.bam 27601184521 BAM aligned CPTAC3 ab95e72b-3a52-4b01-ab35-ac257492f4e9 201390b516a565baebba7e7d213fe036 { 'aliquot_tag': 'DUP_aa190bd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C247230.DUP_aa190bd.WXS.T.hg38 C247230 GBM WXS tumor 7316UP-8 44d33820-4b25-4059-b10b-6f7b9038ed39_wxs_gdc_realn.bam 37400388874 BAM harmonized CPTAC3 f79420a5-f8b3-4853-85e4-8103a56fc3f9 e68ed6aa02a67e4ddfa67d28b6809670 { 'aliquot_tag': 'DUP_aa190bd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C247230.DUP_e9d04cd8.MethArray.Green.R C247230 GBM Methylation Array recurrent_tumor 7316UP-243 205705520056_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d7e68fbf-2764-46c9-80b6-ca329aa55bb8 7da17e3377f4bbf318eee4d289a72aea { 'aliquot_tag': 'DUP_e9d04cd8', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C247230.DUP_e9d04cd8.MethArray.Red.R C247230 GBM Methylation Array recurrent_tumor 7316UP-243 205705520056_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 42ef7b01-295b-480b-8609-5318ea68939a 4218880e132a549e17caabd5b827537b { 'aliquot_tag': 'DUP_e9d04cd8', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C247230.DUP_e9d04cd8.WGS.R C247230 GBM WGS recurrent_tumor 7316UP-243 7316UP-243.WholeGenome.RP-2158.bam 47459738308 BAM aligned CPTAC3 8058370c-7e94-45d2-9131-6ff34cce28ed 897785648732aeff71efb9fc43d61849 { 'aliquot_tag': 'DUP_e9d04cd8', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C247230.DUP_e9d04cd8.WGS.R.hg38 C247230 GBM WGS recurrent_tumor 7316UP-243 a16f7d3f-200b-49db-9909-c361c50a90c8_wgs_gdc_realn.bam 142694777571 BAM harmonized CPTAC3 6e46a682-eb97-4ac2-8d28-4726cae9a0b6 69fb984b60940e3dc29927d1ea3c5ad6 { 'aliquot_tag': 'DUP_e9d04cd8', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C247230.DUP_e9d04cd8.WXS.R C247230 GBM WXS recurrent_tumor 7316UP-243 7316UP-243.WholeExome.RP-1303.bam 22789049179 BAM aligned CPTAC3 9ce277ba-4d70-49f1-9a79-517b1a0abde6 221dd5ca5dce51353687da7f99ec893d { 'aliquot_tag': 'DUP_e9d04cd8', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C247230.DUP_e9d04cd8.WXS.R.hg38 C247230 GBM WXS recurrent_tumor 7316UP-243 a16f7d3f-200b-49db-9909-c361c50a90c8_wxs_gdc_realn.bam 31063908626 BAM harmonized CPTAC3 1e18a44f-e868-400d-bc06-212bb7f6d66a 6d0c6df460bbd54230cf217c8a87feda { 'aliquot_tag': 'DUP_e9d04cd8', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C247230.miRNA-Seq.R C247230 GBM miRNA-Seq recurrent_tumor 7316UP-243-1104766 210817_UNC31-K00269_0302_AHLCTHBBXY_ATTCCT_S2_L001_R1_001.unaln.bam 448212917 BAM unaligned CPTAC3 aceea17e-293a-4fc7-8147-5579c2bde608 3bfd1d0aa3e1677901645211a608928f { 'aliquot_tag': 'ALQ_1e2039ac', 'gdc_sample_type': 'Recurrent Tumor' } +C247230.miRNA-Seq.R.hg38 C247230 GBM miRNA-Seq recurrent_tumor 7316UP-243-1104766 41832d73-f951-447d-964c-51645d636268_mirnaseq_gdc_realn.bam 503338290 BAM harmonized CPTAC3 b875033d-eb38-4314-a95a-0e22cb57b14a 9653a8ae06d0cee9f20f27cc9315fdf4 { 'aliquot_tag': 'ALQ_1e2039ac', 'gdc_sample_type': 'Recurrent Tumor' } C247230.miRNA-Seq.T C247230 GBM miRNA-Seq tumor 7316UP-8-1104780 210817_UNC31-K00269_0302_AHLCTHBBXY_GACGAC_S29_L002_R1_001.unaln.bam 213631329 BAM unaligned CPTAC3 9d7396dc-8425-4efc-b911-f5ec4c08beae 4bef82499534e2579dbf913c3e5cce2c { 'aliquot_tag': 'ALQ_32a21592', 'gdc_sample_type': 'Primary Tumor' } -C247230.RNA-Seq.R1_L002.R C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R1_001.fastq.gz 3300405304 FASTQ R1_L002 unaligned CPTAC3 982111f4-0501-4138-a072-3243d58dd670 3afa847dc8c859a8e4c76d6df90be1a3 { 'aliquot_tag': 'ALQ_1e2039ac', 'gdc_sample_type': 'Recurrent Tumor' } -C247230.RNA-Seq.R1_L006.T C247230 GBM RNA-Seq tumor 7316UP-8-1104780 210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R1_001.fastq.gz 3837839898 FASTQ R1_L006 unaligned CPTAC3 4c52701e-f9d9-4fbf-9530-2d8e420b5078 6225a9ed63e76e993d364df634351f64 { 'aliquot_tag': 'ALQ_32a21592', 'gdc_sample_type': 'Primary Tumor' } -C247230.RNA-Seq.R2_L002.R C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R2_001.fastq.gz 3601477757 FASTQ R2_L002 unaligned CPTAC3 25e17967-5374-45f3-a76c-1d236667a8b2 19ae8c3aa7e21f1b44a8e9dc35127b0f { 'aliquot_tag': 'ALQ_1e2039ac', 'gdc_sample_type': 'Recurrent Tumor' } -C247230.RNA-Seq.R2_L006.T C247230 GBM RNA-Seq tumor 7316UP-8-1104780 210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R2_001.fastq.gz 4058273725 FASTQ R2_L006 unaligned CPTAC3 bd9ebef7-47a0-4365-a921-12a36feb035b a5e0407cc240f2db02daaf9a2406be4c { 'aliquot_tag': 'ALQ_32a21592', 'gdc_sample_type': 'Primary Tumor' } +C247230.miRNA-Seq.T.hg38 C247230 GBM miRNA-Seq tumor 7316UP-8-1104780 12e7bd82-0f76-49f3-ad81-19fde19d043f_mirnaseq_gdc_realn.bam 243425608 BAM harmonized CPTAC3 fcbacfb3-fd33-4485-a01f-5b58d2facb90 2d47dd93db6475358e362352c79b156f { 'aliquot_tag': 'ALQ_32a21592', 'gdc_sample_type': 'Primary Tumor' } +C247230.RNA-Seq.chimeric.R.hg38 C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 340464ee-c62d-42a7-9e87-351b570d1491.rna_seq.chimeric.gdc_realn.bam 40127402 BAM chimeric harmonized CPTAC3 a15555ad-244b-4796-bdea-b9a8da90d4ff 5034e933823c50808cfc44d1df8f0521 { 'aliquot_tag': 'ALQ_1e2039ac', 'gdc_sample_type': 'Recurrent Tumor' } +C247230.RNA-Seq.chimeric.T.hg38 C247230 GBM RNA-Seq tumor 7316UP-8-1104780 44a5dbf8-1ad4-4f4b-ad4e-9e688e0e670d.rna_seq.chimeric.gdc_realn.bam 111055787 BAM chimeric harmonized CPTAC3 f5f3341f-37fe-473d-9481-0d59ae5ecff1 6ebd155a4239a6436978c16b68491ab8 { 'aliquot_tag': 'ALQ_32a21592', 'gdc_sample_type': 'Primary Tumor' } +C247230.RNA-Seq.genomic.R.hg38 C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 340464ee-c62d-42a7-9e87-351b570d1491.rna_seq.genomic.gdc_realn.bam 8685326882 BAM genomic harmonized CPTAC3 2e81b543-8da5-402d-bcc7-15ad86bcbf80 4abe0a2acb85bd15c8c651f033ae30b0 { 'aliquot_tag': 'ALQ_1e2039ac', 'gdc_sample_type': 'Recurrent Tumor' } +C247230.RNA-Seq.genomic.T.hg38 C247230 GBM RNA-Seq tumor 7316UP-8-1104780 44a5dbf8-1ad4-4f4b-ad4e-9e688e0e670d.rna_seq.genomic.gdc_realn.bam 8834657872 BAM genomic harmonized CPTAC3 5479baec-5c9c-4c5d-b85c-23e24ddef741 fcdd729b6fbd50290e53309438f83ee6 { 'aliquot_tag': 'ALQ_32a21592', 'gdc_sample_type': 'Primary Tumor' } +C247230.RNA-Seq.R1_L002.R C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R1_001.fastq.gz 3300405304 FASTQ R1_L002 unaligned CPTAC3 982111f4-0501-4138-a072-3243d58dd670 3afa847dc8c859a8e4c76d6df90be1a3 { 'aliquot_tag': 'ALQ_1e2039ac', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L002' } +C247230.RNA-Seq.R1_L006.T C247230 GBM RNA-Seq tumor 7316UP-8-1104780 210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R1_001.fastq.gz 3837839898 FASTQ R1_L006 unaligned CPTAC3 4c52701e-f9d9-4fbf-9530-2d8e420b5078 6225a9ed63e76e993d364df634351f64 { 'aliquot_tag': 'ALQ_32a21592', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C247230.RNA-Seq.R2_L002.R C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 210811_UNC31-K00269_0301_AHLLC5BBXY_GCAATGCA-GGAACGTT_S7_L002_R2_001.fastq.gz 3601477757 FASTQ R2_L002 unaligned CPTAC3 25e17967-5374-45f3-a76c-1d236667a8b2 19ae8c3aa7e21f1b44a8e9dc35127b0f { 'aliquot_tag': 'ALQ_1e2039ac', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L002' } +C247230.RNA-Seq.R2_L006.T C247230 GBM RNA-Seq tumor 7316UP-8-1104780 210713_UNC32-K00270_0291_AHLK5VBBXY_GACCTGAA-TTGGTGAG_S22_L006_R2_001.fastq.gz 4058273725 FASTQ R2_L006 unaligned CPTAC3 bd9ebef7-47a0-4365-a921-12a36feb035b a5e0407cc240f2db02daaf9a2406be4c { 'aliquot_tag': 'ALQ_32a21592', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C247230.RNA-Seq.transcriptome.R.hg38 C247230 GBM RNA-Seq recurrent_tumor 7316UP-243-1104766 340464ee-c62d-42a7-9e87-351b570d1491.rna_seq.transcriptome.gdc_realn.bam 12827689325 BAM transcriptome harmonized CPTAC3 fce0ad04-a793-4b5b-8ea8-a89ff03a7b56 7a98ec94084b660cbfb39c5b55859322 { 'aliquot_tag': 'ALQ_1e2039ac', 'gdc_sample_type': 'Recurrent Tumor' } +C247230.RNA-Seq.transcriptome.T.hg38 C247230 GBM RNA-Seq tumor 7316UP-8-1104780 44a5dbf8-1ad4-4f4b-ad4e-9e688e0e670d.rna_seq.transcriptome.gdc_realn.bam 14686014418 BAM transcriptome harmonized CPTAC3 ff2b3c82-7af6-469c-8d20-c866442b349c b63a76606e44298d41defe537def782f { 'aliquot_tag': 'ALQ_32a21592', 'gdc_sample_type': 'Primary Tumor' } C247230.WGS.N C247230 GBM WGS blood_normal 7316UP-243-1105280 7316UP-243-1105280.WholeGenome.RP-2158.bam 57314256084 BAM aligned CPTAC3 58a2b1ac-1bcf-4c3f-a404-678d5503f37a 621d9c9991da3c7be4cef6abbb190723 { 'aliquot_tag': 'ALQ_d7b71499', 'gdc_sample_type': 'Blood Derived Normal' } +C247230.WGS.N.hg38 C247230 GBM WGS blood_normal 7316UP-243-1105280 bafee300-6a7f-4e2a-b45d-0ae8e53655db_wgs_gdc_realn.bam 166548205017 BAM harmonized CPTAC3 af1de814-a89b-4044-9f65-925fe40aaf42 cf49c9f6f8635eaf50a6f9439182a354 { 'aliquot_tag': 'ALQ_d7b71499', 'gdc_sample_type': 'Blood Derived Normal' } C247230.WXS.N C247230 GBM WXS blood_normal 7316UP-243-1105280 7316UP-243-1105280.WholeExome.RP-1303.bam 25993398731 BAM aligned CPTAC3 9b772baf-d183-401e-a925-bf90c0717c52 677cad82b6859274a120195b86169063 { 'aliquot_tag': 'ALQ_d7b71499', 'gdc_sample_type': 'Blood Derived Normal' } +C247230.WXS.N.hg38 C247230 GBM WXS blood_normal 7316UP-243-1105280 bafee300-6a7f-4e2a-b45d-0ae8e53655db_wxs_gdc_realn.bam 35512038256 BAM harmonized CPTAC3 086861a1-1e33-4c25-b509-38a0c0f4b1e6 c0cb3531811f0cdca9c143a6a2cdda29 { 'aliquot_tag': 'ALQ_d7b71499', 'gdc_sample_type': 'Blood Derived Normal' } C247230.WXS.R C247230 GBM WXS recurrent_tumor 7316UP-243-1105229 7316UP-243-1105229.WholeExome.RP-1303.bam 22180737177 BAM aligned CPTAC3 b8807cca-8f0f-4399-861a-7a14e01a97f2 9a67b576423d633aab96f2e0cf9f723e { 'aliquot_tag': 'ALQ_548444b7', 'gdc_sample_type': 'Recurrent Tumor' } +C247230.WXS.R.hg38 C247230 GBM WXS recurrent_tumor 7316UP-243-1105229 98f71749-a68e-4bd9-930f-224f65a1bf8e_wxs_gdc_realn.bam 30087935083 BAM harmonized CPTAC3 92fc25a5-3390-42f3-93e8-117df6356e29 4225fa937d0669355ef887fed6fe109b { 'aliquot_tag': 'ALQ_548444b7', 'gdc_sample_type': 'Recurrent Tumor' } C247230.WXS.T C247230 GBM WXS tumor 7316UP-8-1105243 7316UP-8-1105243.WholeExome.RP-1303.bam 27341900884 BAM aligned CPTAC3 dcba1f63-8aa5-4a23-8eae-e1c3b13a7335 8df0bbe77f7474d674effcd334ba7018 { 'aliquot_tag': 'ALQ_b969aeaa', 'gdc_sample_type': 'Primary Tumor' } +C247230.WXS.T.hg38 C247230 GBM WXS tumor 7316UP-8-1105243 eafce93e-0fd9-44bb-942d-7820b6f68744_wxs_gdc_realn.bam 37210403279 BAM harmonized CPTAC3 94b2e77b-dacb-475b-bbef-febab3c064c2 c59b6e07e6379b603c8034be6df2aaab { 'aliquot_tag': 'ALQ_b969aeaa', 'gdc_sample_type': 'Primary Tumor' } C259161.DUP_5c7e3295.MethArray.Green.T C259161 GBM Methylation Array tumor 7316UP-293 205828590001_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 7620dc30-1581-4eb7-9cca-395334fb9aef f3ee23f2699b880db0cd9d5a408cef92 { 'aliquot_tag': 'DUP_5c7e3295', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C259161.DUP_5c7e3295.MethArray.Red.T C259161 GBM Methylation Array tumor 7316UP-293 205828590001_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 d0e798e0-177c-4322-91bc-89928658380f f39c188f4affb12fec70c49ccfb99bec { 'aliquot_tag': 'DUP_5c7e3295', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C259161.DUP_5c7e3295.WGS.T C259161 GBM WGS tumor 7316UP-293 7316UP-293.WholeGenome.RP-2158.bam 51492350207 BAM aligned CPTAC3 b9dd5682-e558-42df-b76f-56dffe1d3e63 add9f5ad40c48a6ba4fe48fa34ea842a { 'aliquot_tag': 'DUP_5c7e3295', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C259161.DUP_5c7e3295.WGS.T.hg38 C259161 GBM WGS tumor 7316UP-293 71aff02e-d6dd-4292-8627-d33c7d95fea5_wgs_gdc_realn.bam 147762673467 BAM harmonized CPTAC3 88db0eef-aadc-4e7b-b6e9-20df18940bf3 806cf54a700a596a2fecbd4300aabc1b { 'aliquot_tag': 'DUP_5c7e3295', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C259161.DUP_5c7e3295.WXS.T C259161 GBM WXS tumor 7316UP-293 7316UP-293.WholeExome.RP-1303.bam 21468924973 BAM aligned CPTAC3 c06021b5-0843-46e8-a2f7-9bbdd7275f57 9afe38d231ab4feb975539d480fe835a { 'aliquot_tag': 'DUP_5c7e3295', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C259161.DUP_5c7e3295.WXS.T.hg38 C259161 GBM WXS tumor 7316UP-293 71aff02e-d6dd-4292-8627-d33c7d95fea5_wxs_gdc_realn.bam 29087943502 BAM harmonized CPTAC3 942805cd-2142-4c93-b3d2-a8980b14e829 710cabcd82da98962a19b73a0c963dd3 { 'aliquot_tag': 'DUP_5c7e3295', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C259161.miRNA-Seq.R C259161 GBM miRNA-Seq recurrent_tumor 7316UP-349-1104793 210817_UNC31-K00269_0302_AHLCTHBBXY_GCCAAT_S31_L002_R1_001.unaln.bam 464236046 BAM unaligned CPTAC3 e4bdd6d6-4248-414d-8170-525e360aa9c1 041723ba253799cd799629f1abd061e0 { 'aliquot_tag': 'ALQ_bd7284b2', 'gdc_sample_type': 'Recurrent Tumor' } +C259161.miRNA-Seq.R.hg38 C259161 GBM miRNA-Seq recurrent_tumor 7316UP-349-1104793 28655cf0-3804-4657-abec-5cd024c18dc8_mirnaseq_gdc_realn.bam 539482740 BAM harmonized CPTAC3 99ce1cb7-e4c5-4231-b9a1-75933d5f6bb6 43fa79eff936e35a08298c3cab36f268 { 'aliquot_tag': 'ALQ_bd7284b2', 'gdc_sample_type': 'Recurrent Tumor' } C259161.miRNA-Seq.T C259161 GBM miRNA-Seq tumor 7316UP-293-1104787 210817_UNC31-K00269_0302_AHLCTHBBXY_TCGGCA_S40_L002_R1_001.unaln.bam 330508572 BAM unaligned CPTAC3 5f0cd3b6-67e2-460b-b629-26c99919328b 285da821920368a666e7806cc43c1235 { 'aliquot_tag': 'ALQ_25aaf04', 'gdc_sample_type': 'Primary Tumor' } -C259161.RNA-Seq.R1_L004.R C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R1_001.fastq.gz 3933839190 FASTQ R1_L004 unaligned CPTAC3 04492d6a-768d-408d-8491-a3421e3d7fb1 2b1841386be1aaf0864d2ba5d322e649 { 'aliquot_tag': 'ALQ_bd7284b2', 'gdc_sample_type': 'Recurrent Tumor' } -C259161.RNA-Seq.R1_L006.T C259161 GBM RNA-Seq tumor 7316UP-293-1104787 210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R1_001.fastq.gz 4076185110 FASTQ R1_L006 unaligned CPTAC3 99e448a9-f393-41a2-9c6a-46ed6a453a25 b0b53e1ae2abad3ee3d440aa67dff5a0 { 'aliquot_tag': 'ALQ_25aaf04', 'gdc_sample_type': 'Primary Tumor' } -C259161.RNA-Seq.R2_L004.R C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R2_001.fastq.gz 4236168874 FASTQ R2_L004 unaligned CPTAC3 66fc2918-baf1-4cce-951f-423eec4d3e30 12a10f749c89a2806297926dc66a83b3 { 'aliquot_tag': 'ALQ_bd7284b2', 'gdc_sample_type': 'Recurrent Tumor' } -C259161.RNA-Seq.R2_L006.T C259161 GBM RNA-Seq tumor 7316UP-293-1104787 210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R2_001.fastq.gz 4363507516 FASTQ R2_L006 unaligned CPTAC3 ef415675-ebd8-43c7-94ea-63da5ebf9db3 1dd021d1a775ec867da4cbf019b515c3 { 'aliquot_tag': 'ALQ_25aaf04', 'gdc_sample_type': 'Primary Tumor' } +C259161.miRNA-Seq.T.hg38 C259161 GBM miRNA-Seq tumor 7316UP-293-1104787 7091f748-633c-46ec-8ac6-19145dd1d5c0_mirnaseq_gdc_realn.bam 374385566 BAM harmonized CPTAC3 08dda8da-4c64-4913-8687-59e6961d514a 25c47af7f29f3d9fa0682a0ecdc3cc8d { 'aliquot_tag': 'ALQ_25aaf04', 'gdc_sample_type': 'Primary Tumor' } +C259161.RNA-Seq.chimeric.R.hg38 C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 56f0c57e-8469-49ee-b015-01e2ab4d2be7.rna_seq.chimeric.gdc_realn.bam 53445744 BAM chimeric harmonized CPTAC3 13904bc4-8e3d-42a1-ae74-c1effec4b272 9927918acc4ba48190c619b86e1667eb { 'aliquot_tag': 'ALQ_bd7284b2', 'gdc_sample_type': 'Recurrent Tumor' } +C259161.RNA-Seq.chimeric.T.hg38 C259161 GBM RNA-Seq tumor 7316UP-293-1104787 96641f1b-da02-4490-9f79-67991abd1f5c.rna_seq.chimeric.gdc_realn.bam 102727780 BAM chimeric harmonized CPTAC3 f7a4c4a5-df6a-4d3c-b004-bc1a579a37fc 4a0c322388b96d98563903bfeead603c { 'aliquot_tag': 'ALQ_25aaf04', 'gdc_sample_type': 'Primary Tumor' } +C259161.RNA-Seq.genomic.R.hg38 C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 56f0c57e-8469-49ee-b015-01e2ab4d2be7.rna_seq.genomic.gdc_realn.bam 9556689537 BAM genomic harmonized CPTAC3 e0abe08b-c62c-4134-aa63-cfb21cfde381 54b04b340af667b159fde66107177188 { 'aliquot_tag': 'ALQ_bd7284b2', 'gdc_sample_type': 'Recurrent Tumor' } +C259161.RNA-Seq.genomic.T.hg38 C259161 GBM RNA-Seq tumor 7316UP-293-1104787 96641f1b-da02-4490-9f79-67991abd1f5c.rna_seq.genomic.gdc_realn.bam 9477389368 BAM genomic harmonized CPTAC3 0185bf58-ee9b-44d5-89d1-a40b4cebf3a4 bf8ec446be511d11226c3b8b8b13cd79 { 'aliquot_tag': 'ALQ_25aaf04', 'gdc_sample_type': 'Primary Tumor' } +C259161.RNA-Seq.R1_L004.R C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R1_001.fastq.gz 3933839190 FASTQ R1_L004 unaligned CPTAC3 04492d6a-768d-408d-8491-a3421e3d7fb1 2b1841386be1aaf0864d2ba5d322e649 { 'aliquot_tag': 'ALQ_bd7284b2', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L004' } +C259161.RNA-Seq.R1_L006.T C259161 GBM RNA-Seq tumor 7316UP-293-1104787 210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R1_001.fastq.gz 4076185110 FASTQ R1_L006 unaligned CPTAC3 99e448a9-f393-41a2-9c6a-46ed6a453a25 b0b53e1ae2abad3ee3d440aa67dff5a0 { 'aliquot_tag': 'ALQ_25aaf04', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C259161.RNA-Seq.R2_L004.R C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 210811_UNC31-K00269_0301_AHLLC5BBXY_TGGTGGCA-TCCTGTAA_S16_L004_R2_001.fastq.gz 4236168874 FASTQ R2_L004 unaligned CPTAC3 66fc2918-baf1-4cce-951f-423eec4d3e30 12a10f749c89a2806297926dc66a83b3 { 'aliquot_tag': 'ALQ_bd7284b2', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L004' } +C259161.RNA-Seq.R2_L006.T C259161 GBM RNA-Seq tumor 7316UP-293-1104787 210713_UNC32-K00270_0291_AHLK5VBBXY_CTCTCGTC-TATAACCT_S21_L006_R2_001.fastq.gz 4363507516 FASTQ R2_L006 unaligned CPTAC3 ef415675-ebd8-43c7-94ea-63da5ebf9db3 1dd021d1a775ec867da4cbf019b515c3 { 'aliquot_tag': 'ALQ_25aaf04', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C259161.RNA-Seq.transcriptome.R.hg38 C259161 GBM RNA-Seq recurrent_tumor 7316UP-349-1104793 56f0c57e-8469-49ee-b015-01e2ab4d2be7.rna_seq.transcriptome.gdc_realn.bam 15103656042 BAM transcriptome harmonized CPTAC3 e852e168-d979-445a-be59-d32afa63ebd4 c6f2848df594dd6262f54142fa0d894d { 'aliquot_tag': 'ALQ_bd7284b2', 'gdc_sample_type': 'Recurrent Tumor' } +C259161.RNA-Seq.transcriptome.T.hg38 C259161 GBM RNA-Seq tumor 7316UP-293-1104787 96641f1b-da02-4490-9f79-67991abd1f5c.rna_seq.transcriptome.gdc_realn.bam 16376632344 BAM transcriptome harmonized CPTAC3 8dbf338d-1e5d-4937-bc86-33a7ede035b0 dfc9fe5cdbc2141fdbcb33640a0563c9 { 'aliquot_tag': 'ALQ_25aaf04', 'gdc_sample_type': 'Primary Tumor' } C259161.WGS.N C259161 GBM WGS blood_normal 7316UP-293-1105283 7316UP-293-1105283.WholeGenome.RP-2158.bam 57896176406 BAM aligned CPTAC3 3da278c9-b808-4a2e-af20-5ba92f403ab0 19be2d8cdb31387309514ec0d57cf365 { 'aliquot_tag': 'ALQ_bb40ce93', 'gdc_sample_type': 'Blood Derived Normal' } +C259161.WGS.N.hg38 C259161 GBM WGS blood_normal 7316UP-293-1105283 603ac742-ade4-40ab-8520-057a0e4f8ecb_wgs_gdc_realn.bam 170408183425 BAM harmonized CPTAC3 957eecd3-4344-4afa-9bf2-b2af7d954a5e 12867c9c06bffa66e40949a6e653c86c { 'aliquot_tag': 'ALQ_bb40ce93', 'gdc_sample_type': 'Blood Derived Normal' } C259161.WGS.R C259161 GBM WGS recurrent_tumor 7316UP-349-1105257 7316UP-349-1105257.WholeGenome.RP-2158.bam 50639596227 BAM aligned CPTAC3 9acde03d-85af-45b6-850f-fa97cc0c7340 0ef07a74f7de9c04f55f9c3bfaa25648 { 'aliquot_tag': 'ALQ_a8ddaa29', 'gdc_sample_type': 'Recurrent Tumor' } C259161.WGS.T C259161 GBM WGS tumor 7316UP-293-1105250 7316UP-293-1105250.WholeGenome.RP-2158.bam 57788463110 BAM aligned CPTAC3 74371bec-c399-456a-b912-e49ef8cf7290 893770295090e3ebf3c290994a74922f { 'aliquot_tag': 'ALQ_97e7e164', 'gdc_sample_type': 'Primary Tumor' } +C259161.WGS.T.hg38 C259161 GBM WGS tumor 7316UP-293-1105250 c72c1846-16af-4899-a429-9f5b7c954a58_wgs_gdc_realn.bam 168293940872 BAM harmonized CPTAC3 389e91a8-3b5c-4d4a-9e58-7f45e2698503 36c7d16cf5ee62c0c4f45ff16c4e50b2 { 'aliquot_tag': 'ALQ_97e7e164', 'gdc_sample_type': 'Primary Tumor' } C259161.WXS.N C259161 GBM WXS blood_normal 7316UP-293-1105283 7316UP-293-1105283.WholeExome.RP-1303.bam 25717997268 BAM aligned CPTAC3 5fe5e6d3-0f58-49cf-b0f2-861cc836f83b 4eaed368a3d54ad6e801c0f1f467c88b { 'aliquot_tag': 'ALQ_bb40ce93', 'gdc_sample_type': 'Blood Derived Normal' } +C259161.WXS.N.hg38 C259161 GBM WXS blood_normal 7316UP-293-1105283 603ac742-ade4-40ab-8520-057a0e4f8ecb_wxs_gdc_realn.bam 34903240457 BAM harmonized CPTAC3 a5ab0154-a15f-43d2-971f-55ba37282546 eecea6a4090405c7cf77a06792fd8c75 { 'aliquot_tag': 'ALQ_bb40ce93', 'gdc_sample_type': 'Blood Derived Normal' } C259161.WXS.R C259161 GBM WXS recurrent_tumor 7316UP-349-1105257 7316UP-349-1105257.WholeExome.RP-1303.bam 29700714795 BAM aligned CPTAC3 f12b0fa6-8ad9-4f0b-a9e6-e27e6e26bec5 ea4f85779c10bb585a5e94dec29a171a { 'aliquot_tag': 'ALQ_a8ddaa29', 'gdc_sample_type': 'Recurrent Tumor' } +C259161.WXS.R.hg38 C259161 GBM WXS recurrent_tumor 7316UP-349-1105257 9d818652-ee59-4e8b-84f0-d25532dd38cf_wxs_gdc_realn.bam 40707347912 BAM harmonized CPTAC3 eb83d8e6-500f-4e99-82ac-fc4e079b3fb8 1b878d210610df8150929f6a221fdcae { 'aliquot_tag': 'ALQ_a8ddaa29', 'gdc_sample_type': 'Recurrent Tumor' } C259161.WXS.T C259161 GBM WXS tumor 7316UP-293-1105250 7316UP-293-1105250.WholeExome.RP-1303.bam 29802893632 BAM aligned CPTAC3 f16c354e-4c82-4248-a6d1-2d52ed2aaf13 626cd0ab2494875a3491416c19c1eb74 { 'aliquot_tag': 'ALQ_97e7e164', 'gdc_sample_type': 'Primary Tumor' } +C259161.WXS.T.hg38 C259161 GBM WXS tumor 7316UP-293-1105250 c72c1846-16af-4899-a429-9f5b7c954a58_wxs_gdc_realn.bam 40738250391 BAM harmonized CPTAC3 2fe9a9b8-b5c4-4e72-8fb7-71cac06dd773 fa2861e171552221e417540fa05b640b { 'aliquot_tag': 'ALQ_97e7e164', 'gdc_sample_type': 'Primary Tumor' } C266664.DUP_5dbc58a2.MethArray.Green.T C266664 GBM Methylation Array tumor 7316UP-393 205707890106_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a32c7219-318d-484b-8563-d9d3423acafc e353cda16efd4bf59828fecada5ed772 { 'aliquot_tag': 'DUP_5dbc58a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C266664.DUP_5dbc58a2.MethArray.Red.T C266664 GBM Methylation Array tumor 7316UP-393 205707890106_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 54fe2299-ad7e-4f6e-8309-3a0cd4713a35 0757f5170e984f025a74818a4003dfe4 { 'aliquot_tag': 'DUP_5dbc58a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C266664.DUP_5dbc58a2.WGS.T C266664 GBM WGS tumor 7316UP-393 7316UP-393.WholeGenome.RP-2158.bam 61362965684 BAM aligned CPTAC3 455c35ce-ea41-4b99-bb0a-46816906b859 2209a014757265b8f731e786c2459948 { 'aliquot_tag': 'DUP_5dbc58a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C266664.DUP_5dbc58a2.WGS.T.hg38 C266664 GBM WGS tumor 7316UP-393 670c02b3-383c-4ca4-9a0d-2fc479296d0c_wgs_gdc_realn.bam 177904424104 BAM harmonized CPTAC3 e04b8d09-5776-4725-b3f5-db58cd62f8f6 abcafa3a38b34a21bf0865858d3c647e { 'aliquot_tag': 'DUP_5dbc58a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C266664.DUP_5dbc58a2.WXS.T C266664 GBM WXS tumor 7316UP-393 7316UP-393.WholeExome.RP-1303.bam 32889072571 BAM aligned CPTAC3 1b809ed9-7f11-4a12-9402-43c8f12c93c8 bd066a01085fa2594c1f047c7332b76f { 'aliquot_tag': 'DUP_5dbc58a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C266664.DUP_5dbc58a2.WXS.T.hg38 C266664 GBM WXS tumor 7316UP-393 670c02b3-383c-4ca4-9a0d-2fc479296d0c_wxs_gdc_realn.bam 45112910713 BAM harmonized CPTAC3 ad1b5b7b-5c70-44e1-aa5c-f1e397fbb55a 7193b6a00c7e7379ccdfd63d14b0958b { 'aliquot_tag': 'DUP_5dbc58a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C266664.DUP_f5846b1c.MethArray.Green.R C266664 GBM Methylation Array recurrent_tumor 7316UP-553 205705520056_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a5c8ec4f-e9b9-4dab-9777-b85dea6cd258 d513d197146776d07e147cd631af2cf4 { 'aliquot_tag': 'DUP_f5846b1c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C266664.DUP_f5846b1c.MethArray.Red.R C266664 GBM Methylation Array recurrent_tumor 7316UP-553 205705520056_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 7fa9d505-f189-484a-90f6-3444297d0f05 867eb7e3c5a8d1321e1e8705fb50fd7c { 'aliquot_tag': 'DUP_f5846b1c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C266664.DUP_f5846b1c.WGS.R C266664 GBM WGS recurrent_tumor 7316UP-553 7316UP-553.WholeGenome.RP-2158.bam 54234643027 BAM aligned CPTAC3 2ac25df6-1097-47be-ba43-a53283235015 1affa8e36e43be345ed26e06ad276e51 { 'aliquot_tag': 'DUP_f5846b1c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C266664.DUP_f5846b1c.WGS.R.hg38 C266664 GBM WGS recurrent_tumor 7316UP-553 76189e22-96ba-4eb1-8901-b9655aafb241_wgs_gdc_realn.bam 166973550960 BAM harmonized CPTAC3 3576132e-1814-4928-b431-292d202259ae d71b1f0b8a08561e2ef5826e16582575 { 'aliquot_tag': 'DUP_f5846b1c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C266664.DUP_f5846b1c.WXS.R C266664 GBM WXS recurrent_tumor 7316UP-553 7316UP-553.WholeExome.RP-1303.bam 24922371326 BAM aligned CPTAC3 11bcff0f-cb87-409b-b58e-ff8859203502 78f9623b2248c4ea51ec63398690b1ca { 'aliquot_tag': 'DUP_f5846b1c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C266664.DUP_f5846b1c.WXS.R.hg38 C266664 GBM WXS recurrent_tumor 7316UP-553 76189e22-96ba-4eb1-8901-b9655aafb241_wxs_gdc_realn.bam 85867672951 BAM harmonized CPTAC3 c61e7ef0-1f5b-4b8a-8d31-0f7fd0b03141 afe556b9a173b78e4ffe03ebe49c9a84 { 'aliquot_tag': 'DUP_f5846b1c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C266664.miRNA-Seq.R C266664 GBM miRNA-Seq recurrent_tumor 7316UP-553-1104771 210817_UNC31-K00269_0302_AHLCTHBBXY_CACTCA_S7_L001_R1_001.unaln.bam 134303715 BAM unaligned CPTAC3 846ccca6-b823-4daa-81b1-3aaaba6e38d8 ece599e1b740f80b0e55f163122143a5 { 'aliquot_tag': 'ALQ_5fa6e3f3', 'gdc_sample_type': 'Recurrent Tumor' } +C266664.miRNA-Seq.R.hg38 C266664 GBM miRNA-Seq recurrent_tumor 7316UP-553-1104771 3d0007d9-d52a-4daa-ba33-f6d5aea63443_mirnaseq_gdc_realn.bam 156242375 BAM harmonized CPTAC3 d94ead59-6712-4b0e-9e4d-f8f9318c04b1 e210e7a7af0313702a2851c1f78b86fd { 'aliquot_tag': 'ALQ_5fa6e3f3', 'gdc_sample_type': 'Recurrent Tumor' } C266664.miRNA-Seq.T C266664 GBM miRNA-Seq tumor 7316UP-393-1104804 210817_UNC31-K00269_0302_AHLCTHBBXY_GTAGAG_S17_L003_R1_001.unaln.bam 168626022 BAM unaligned CPTAC3 a21dc826-feca-410d-9393-6ce5bb8ff9d6 cb4d3471b1842e3071474312b4f0a267 { 'aliquot_tag': 'ALQ_9958ec4b', 'gdc_sample_type': 'Primary Tumor' } -C266664.RNA-Seq.R1_L001.T C266664 GBM RNA-Seq tumor 7316UP-393-1104804 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R1_001.fastq.gz 3742428699 FASTQ R1_L001 unaligned CPTAC3 d47ac642-9204-45da-a0b5-ea6a80d65139 597db318e3525ed903694fc8a8d25200 { 'aliquot_tag': 'ALQ_9958ec4b', 'gdc_sample_type': 'Primary Tumor' } -C266664.RNA-Seq.R2_L001.T C266664 GBM RNA-Seq tumor 7316UP-393-1104804 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R2_001.fastq.gz 4195942259 FASTQ R2_L001 unaligned CPTAC3 1671b3e1-6b22-4326-bf41-49312e3c6829 a77eced373b4b2ff82f3ce70b5856e2b { 'aliquot_tag': 'ALQ_9958ec4b', 'gdc_sample_type': 'Primary Tumor' } +C266664.miRNA-Seq.T.hg38 C266664 GBM miRNA-Seq tumor 7316UP-393-1104804 5151925a-52f2-4dbf-83ce-fff860e41e3d_mirnaseq_gdc_realn.bam 202471637 BAM harmonized CPTAC3 597ee29b-d771-4ad0-bcf9-19227dd4f906 d9d49260d93302fad8121e68a25c64d9 { 'aliquot_tag': 'ALQ_9958ec4b', 'gdc_sample_type': 'Primary Tumor' } +C266664.RNA-Seq.chimeric.T.hg38 C266664 GBM RNA-Seq tumor 7316UP-393-1104804 9421c1ee-c730-4566-8d12-eefd7ffb5759.rna_seq.chimeric.gdc_realn.bam 79986402 BAM chimeric harmonized CPTAC3 083418d6-1b20-437f-b366-197418ec4056 bb25f03ff841586b027f1fd86c748260 { 'aliquot_tag': 'ALQ_9958ec4b', 'gdc_sample_type': 'Primary Tumor' } +C266664.RNA-Seq.genomic.T.hg38 C266664 GBM RNA-Seq tumor 7316UP-393-1104804 9421c1ee-c730-4566-8d12-eefd7ffb5759.rna_seq.genomic.gdc_realn.bam 8262571082 BAM genomic harmonized CPTAC3 d58ecb4b-0513-41e1-9875-924f338eb487 4ecd120adb68fa070ab77e353d4a8ab3 { 'aliquot_tag': 'ALQ_9958ec4b', 'gdc_sample_type': 'Primary Tumor' } +C266664.RNA-Seq.R1_L001.T C266664 GBM RNA-Seq tumor 7316UP-393-1104804 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R1_001.fastq.gz 3742428699 FASTQ R1_L001 unaligned CPTAC3 d47ac642-9204-45da-a0b5-ea6a80d65139 597db318e3525ed903694fc8a8d25200 { 'aliquot_tag': 'ALQ_9958ec4b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C266664.RNA-Seq.R2_L001.T C266664 GBM RNA-Seq tumor 7316UP-393-1104804 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCATTCT-CTAGCTTG_S2_L001_R2_001.fastq.gz 4195942259 FASTQ R2_L001 unaligned CPTAC3 1671b3e1-6b22-4326-bf41-49312e3c6829 a77eced373b4b2ff82f3ce70b5856e2b { 'aliquot_tag': 'ALQ_9958ec4b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C266664.RNA-Seq.transcriptome.T.hg38 C266664 GBM RNA-Seq tumor 7316UP-393-1104804 9421c1ee-c730-4566-8d12-eefd7ffb5759.rna_seq.transcriptome.gdc_realn.bam 17009612181 BAM transcriptome harmonized CPTAC3 d765be70-b7b0-4f23-872e-8f50c16f3119 e961fae7f6b2f5f83e282c571f5023bd { 'aliquot_tag': 'ALQ_9958ec4b', 'gdc_sample_type': 'Primary Tumor' } C266664.WGS.N C266664 GBM WGS blood_normal 7316UP-393-1105287 7316UP-393-1105287.WholeGenome.RP-2158.bam 59038265208 BAM aligned CPTAC3 4933d676-52c9-43fe-8946-9946412334c6 095f26fa61ffec9eef27ad927a4a2acb { 'aliquot_tag': 'ALQ_7da3d54a', 'gdc_sample_type': 'Blood Derived Normal' } +C266664.WGS.N.hg38 C266664 GBM WGS blood_normal 7316UP-393-1105287 183166cb-a3d2-40ed-879f-4c904682b10c_wgs_gdc_realn.bam 172857422135 BAM harmonized CPTAC3 f92426ea-9a03-45c1-bece-4af8fc16d4b0 be071ef8353e08f2737e78363c8498b7 { 'aliquot_tag': 'ALQ_7da3d54a', 'gdc_sample_type': 'Blood Derived Normal' } C266664.WGS.R C266664 GBM WGS recurrent_tumor 7316UP-553-1105234 7316UP-553-1105234.WholeGenome.RP-2158.bam 66530087101 BAM aligned CPTAC3 9c7c70af-1d81-42d2-859e-3b613a2c0d93 30b1c57fec53b1c25996f3a096ab49df { 'aliquot_tag': 'ALQ_f5d777f6', 'gdc_sample_type': 'Recurrent Tumor' } +C266664.WGS.R.hg38 C266664 GBM WGS recurrent_tumor 7316UP-553-1105234 01ea1502-dd69-45cb-907b-cd10df01c80f_wgs_gdc_realn.bam 200097554810 BAM harmonized CPTAC3 a3ccc1c4-ddd9-49eb-9d70-10f4458808c0 05ef187e9b05fa3a334870ef54e78792 { 'aliquot_tag': 'ALQ_f5d777f6', 'gdc_sample_type': 'Recurrent Tumor' } C266664.WXS.N C266664 GBM WXS blood_normal 7316UP-393-1105287 7316UP-393-1105287.WholeExome.RP-1303.bam 20596651439 BAM aligned CPTAC3 d2dd83e7-1770-4ffa-bf6b-41ba9814306c 6c211d9fabce2892cf5da12bfb4abd5d { 'aliquot_tag': 'ALQ_7da3d54a', 'gdc_sample_type': 'Blood Derived Normal' } +C266664.WXS.N.hg38 C266664 GBM WXS blood_normal 7316UP-393-1105287 183166cb-a3d2-40ed-879f-4c904682b10c_wxs_gdc_realn.bam 27685143779 BAM harmonized CPTAC3 71300e5d-68de-495d-ba73-68637b1ff049 0a78bfc818e8e71956350c4fcc4e2d53 { 'aliquot_tag': 'ALQ_7da3d54a', 'gdc_sample_type': 'Blood Derived Normal' } C266664.WXS.R C266664 GBM WXS recurrent_tumor 7316UP-553-1105234 7316UP-553-1105234.WholeExome.RP-1303.bam 24219633494 BAM aligned CPTAC3 16f314d3-9c0d-4227-8af9-67e9e5027f8e 2c303e1557bd8d84beab270927f52e31 { 'aliquot_tag': 'ALQ_f5d777f6', 'gdc_sample_type': 'Recurrent Tumor' } +C266664.WXS.R.hg38 C266664 GBM WXS recurrent_tumor 7316UP-553-1105234 01ea1502-dd69-45cb-907b-cd10df01c80f_wxs_gdc_realn.bam 32896304820 BAM harmonized CPTAC3 93d9c6eb-04ed-488c-92db-d2e329cc4ed6 fdd12eb16d639e0c44a6b6753cc22a6a { 'aliquot_tag': 'ALQ_f5d777f6', 'gdc_sample_type': 'Recurrent Tumor' } C266664.WXS.T C266664 GBM WXS tumor 7316UP-393-1105269 7316UP-393-1105269.WholeExome.RP-1303.bam 31877144001 BAM aligned CPTAC3 0b7af748-7592-49d9-957e-44e63c0f6e26 913e998c980dfa73b834dd0651a06704 { 'aliquot_tag': 'ALQ_498d5c3', 'gdc_sample_type': 'Primary Tumor' } +C266664.WXS.T.hg38 C266664 GBM WXS tumor 7316UP-393-1105269 3af09701-86aa-4741-aa59-9aed8b02f2bf_wxs_gdc_realn.bam 43507973790 BAM harmonized CPTAC3 7fa81b59-b344-463c-91a7-3bf91763635f df7122d0f7d1b182e5150b184946e4f8 { 'aliquot_tag': 'ALQ_498d5c3', 'gdc_sample_type': 'Primary Tumor' } C283515.DUP_16970afa.MethArray.Green.T C283515 GBM Methylation Array tumor 7316UP-504 205705520096_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d1433262-16e0-4b67-af26-d9bea0b7ab43 9b42994a87b1b31c26290ff2c5cc1b26 { 'aliquot_tag': 'DUP_16970afa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C283515.DUP_16970afa.MethArray.Red.T C283515 GBM Methylation Array tumor 7316UP-504 205705520096_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 3463d5d7-e0f6-4adb-b6b5-77299c6dd438 973980c1830fdb1d968701bbf9122cd9 { 'aliquot_tag': 'DUP_16970afa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C283515.DUP_16970afa.WGS.T C283515 GBM WGS tumor 7316UP-504 7316UP-504.WholeGenome.RP-2158.bam 55266574890 BAM aligned CPTAC3 a2c6a65f-2824-4857-bee9-62b24c49d7de f9169f14213c88b33c991571fd353074 { 'aliquot_tag': 'DUP_16970afa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C283515.DUP_16970afa.WGS.T.hg38 C283515 GBM WGS tumor 7316UP-504 2a1d8b76-daf0-4068-8ad2-61c163e545a3_wgs_gdc_realn.bam 166572784981 BAM harmonized CPTAC3 f01f616f-baae-41c6-bc30-d7baa888fca2 ba236a69e0e00fc1e2eeb70a5765cebd { 'aliquot_tag': 'DUP_16970afa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C283515.DUP_16970afa.WXS.T C283515 GBM WXS tumor 7316UP-504 7316UP-504.WholeExome.RP-1303.bam 29107187041 BAM aligned CPTAC3 5c844fd6-1972-4f54-947f-9e802fba0a0c 6e2d29f1cdfc6bd359f87c98c9f0e68a { 'aliquot_tag': 'DUP_16970afa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C283515.DUP_16970afa.WXS.T.hg38 C283515 GBM WXS tumor 7316UP-504 2a1d8b76-daf0-4068-8ad2-61c163e545a3_wxs_gdc_realn.bam 39488745732 BAM harmonized CPTAC3 fb59bee7-446d-4669-bd78-6234196d0153 48d0752142b31493c2e37ec0c14e59eb { 'aliquot_tag': 'DUP_16970afa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C283515.DUP_d7547996.MethArray.Green.R C283515 GBM Methylation Array recurrent_tumor 7316UP-984 205707890172_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 9e3e7693-3b73-467b-8b4d-d3b39fd64d19 6201b7856c280184cdeaa69f198c00f2 { 'aliquot_tag': 'DUP_d7547996', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C283515.DUP_d7547996.MethArray.Red.R C283515 GBM Methylation Array recurrent_tumor 7316UP-984 205707890172_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 df1526d9-b8f9-4cbd-b2f6-3902c29d113e f98589d46cfc67ef0bb21db8c552a788 { 'aliquot_tag': 'DUP_d7547996', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C283515.DUP_d7547996.WGS.R C283515 GBM WGS recurrent_tumor 7316UP-984 7316UP-984.WholeGenome.RP-2158.bam 57538611032 BAM aligned CPTAC3 03347b56-bd16-41d2-aa03-41d9bc0948e8 c00da0da73319343d312d409ceb16601 { 'aliquot_tag': 'DUP_d7547996', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C283515.DUP_d7547996.WGS.R.hg38 C283515 GBM WGS recurrent_tumor 7316UP-984 e6afe946-db00-4032-bb12-f2e7776820a8_wgs_gdc_realn.bam 505434638875 BAM harmonized CPTAC3 6c868a5b-4408-40cf-86d7-aa6815f01158 47cb295a9306e8f54bcd2bc93ec1bcd7 { 'aliquot_tag': 'DUP_d7547996', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C283515.DUP_d7547996.WXS.R C283515 GBM WXS recurrent_tumor 7316UP-984 7316UP-984.WholeExome.RP-1303.bam 41783529224 BAM aligned CPTAC3 2fa033b4-2cb4-4201-9f32-5b1f9bf295c8 273b984187750f3633d12b43c04e2c6a { 'aliquot_tag': 'DUP_d7547996', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C283515.DUP_d7547996.WXS.R.hg38 C283515 GBM WXS recurrent_tumor 7316UP-984 e6afe946-db00-4032-bb12-f2e7776820a8_wxs_gdc_realn.bam 57797248604 BAM harmonized CPTAC3 ebb8e701-0bcd-4507-b17e-bcffcd66a4f7 5fa425aaa027280c11b419006d5c72b7 { 'aliquot_tag': 'DUP_d7547996', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C283515.miRNA-Seq.R C283515 GBM miRNA-Seq recurrent_tumor 7316UP-984-1104775 210817_UNC31-K00269_0302_AHLCTHBBXY_CCAACA_S11_L001_R1_001.unaln.bam 139003163 BAM unaligned CPTAC3 05ba2a84-bc05-4050-ad97-13ee22e23931 2c578aa7018fcd6f18e68c0faea323e6 { 'aliquot_tag': 'ALQ_c34e5354', 'gdc_sample_type': 'Recurrent Tumor' } +C283515.miRNA-Seq.R.hg38 C283515 GBM miRNA-Seq recurrent_tumor 7316UP-984-1104775 d52b65ea-506a-4ebf-a64c-0055cdb439d6_mirnaseq_gdc_realn.bam 159660973 BAM harmonized CPTAC3 77450024-c5c6-4398-bc39-7168fd9f72ae 70db5849e2a0ebc4bb35df3354b98cdb { 'aliquot_tag': 'ALQ_c34e5354', 'gdc_sample_type': 'Recurrent Tumor' } C283515.miRNA-Seq.T C283515 GBM miRNA-Seq tumor 7316UP-504-1104814 210817_UNC31-K00269_0302_AHLCTHBBXY_ATTCCT_S2_L003_R1_001.unaln.bam 468397806 BAM unaligned CPTAC3 daffe531-d4de-49d7-a035-b56a098b7c89 d76d4f76d4b05a3e5b106b6923cdec21 { 'aliquot_tag': 'ALQ_f082514a', 'gdc_sample_type': 'Primary Tumor' } -C283515.RNA-Seq.R1_L003.R C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R1_001.fastq.gz 4296068185 FASTQ R1_L003 unaligned CPTAC3 543f557f-1beb-4456-a0fd-cec8d084ff20 cabfd9546a058e1d4982e38e22d6a325 { 'aliquot_tag': 'ALQ_c34e5354', 'gdc_sample_type': 'Recurrent Tumor' } -C283515.RNA-Seq.R1_L004.T C283515 GBM RNA-Seq tumor 7316UP-504-1104814 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R1_001.fastq.gz 4256039693 FASTQ R1_L004 unaligned CPTAC3 788421a7-7d30-4bc6-b77a-688289cf5778 7e85eef9e8d32b12bc0aa9269e902593 { 'aliquot_tag': 'ALQ_f082514a', 'gdc_sample_type': 'Primary Tumor' } -C283515.RNA-Seq.R2_L003.R C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R2_001.fastq.gz 4586968183 FASTQ R2_L003 unaligned CPTAC3 43aa9185-30e8-46cc-81ff-279a1e9f2350 7a52b03690b60a686b194eba8e775014 { 'aliquot_tag': 'ALQ_c34e5354', 'gdc_sample_type': 'Recurrent Tumor' } -C283515.RNA-Seq.R2_L004.T C283515 GBM RNA-Seq tumor 7316UP-504-1104814 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R2_001.fastq.gz 4571169592 FASTQ R2_L004 unaligned CPTAC3 5bccff6e-1343-4834-b5ce-71abd40aa308 ba4d13962dfdcebd31aa1283c7283a1d { 'aliquot_tag': 'ALQ_f082514a', 'gdc_sample_type': 'Primary Tumor' } +C283515.miRNA-Seq.T.hg38 C283515 GBM miRNA-Seq tumor 7316UP-504-1104814 cd9ddde9-a159-46ac-890a-e289dc221559_mirnaseq_gdc_realn.bam 577165282 BAM harmonized CPTAC3 c2a4f903-52c4-4110-a4a1-22ae072b0f3a 9784dd911262a70b2e9d9ff138b25762 { 'aliquot_tag': 'ALQ_f082514a', 'gdc_sample_type': 'Primary Tumor' } +C283515.RNA-Seq.chimeric.R.hg38 C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 fea88ec9-ffbb-4461-b61b-248f52c8d9e7.rna_seq.chimeric.gdc_realn.bam 52068135 BAM chimeric harmonized CPTAC3 c49e3472-835c-4b19-9228-be22252f68b2 3ae1076b4bc66f5e6a854d32e9d6633a { 'aliquot_tag': 'ALQ_c34e5354', 'gdc_sample_type': 'Recurrent Tumor' } +C283515.RNA-Seq.chimeric.T.hg38 C283515 GBM RNA-Seq tumor 7316UP-504-1104814 0ddbbaae-9242-4ded-a7fd-b6d12c4b12b6.rna_seq.chimeric.gdc_realn.bam 42435047 BAM chimeric harmonized CPTAC3 8b7d8ba7-f2e1-4a63-9e6b-2837cd66ca51 455afe0399f25fcc9306c3974a6a57df { 'aliquot_tag': 'ALQ_f082514a', 'gdc_sample_type': 'Primary Tumor' } +C283515.RNA-Seq.genomic.R.hg38 C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 fea88ec9-ffbb-4461-b61b-248f52c8d9e7.rna_seq.genomic.gdc_realn.bam 8996805447 BAM genomic harmonized CPTAC3 1f87bca4-8222-4279-85de-17b7fc809348 fe1699437bb946b9e5d35e68532044c3 { 'aliquot_tag': 'ALQ_c34e5354', 'gdc_sample_type': 'Recurrent Tumor' } +C283515.RNA-Seq.genomic.T.hg38 C283515 GBM RNA-Seq tumor 7316UP-504-1104814 0ddbbaae-9242-4ded-a7fd-b6d12c4b12b6.rna_seq.genomic.gdc_realn.bam 9269250037 BAM genomic harmonized CPTAC3 7c5a7f1f-7309-4643-b673-ae16e1e917f0 9effa10e394f583b4c7bcb7332ac06de { 'aliquot_tag': 'ALQ_f082514a', 'gdc_sample_type': 'Primary Tumor' } +C283515.RNA-Seq.R1_L003.R C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R1_001.fastq.gz 4296068185 FASTQ R1_L003 unaligned CPTAC3 543f557f-1beb-4456-a0fd-cec8d084ff20 cabfd9546a058e1d4982e38e22d6a325 { 'aliquot_tag': 'ALQ_c34e5354', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L003' } +C283515.RNA-Seq.R1_L004.T C283515 GBM RNA-Seq tumor 7316UP-504-1104814 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R1_001.fastq.gz 4256039693 FASTQ R1_L004 unaligned CPTAC3 788421a7-7d30-4bc6-b77a-688289cf5778 7e85eef9e8d32b12bc0aa9269e902593 { 'aliquot_tag': 'ALQ_f082514a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C283515.RNA-Seq.R2_L003.R C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGAGGCC-GTTAATTG_S10_L003_R2_001.fastq.gz 4586968183 FASTQ R2_L003 unaligned CPTAC3 43aa9185-30e8-46cc-81ff-279a1e9f2350 7a52b03690b60a686b194eba8e775014 { 'aliquot_tag': 'ALQ_c34e5354', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L003' } +C283515.RNA-Seq.R2_L004.T C283515 GBM RNA-Seq tumor 7316UP-504-1104814 210713_UNC32-K00270_0291_AHLK5VBBXY_ATGTAAGT-ACTCTATG_S13_L004_R2_001.fastq.gz 4571169592 FASTQ R2_L004 unaligned CPTAC3 5bccff6e-1343-4834-b5ce-71abd40aa308 ba4d13962dfdcebd31aa1283c7283a1d { 'aliquot_tag': 'ALQ_f082514a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C283515.RNA-Seq.transcriptome.R.hg38 C283515 GBM RNA-Seq recurrent_tumor 7316UP-984-1104775 fea88ec9-ffbb-4461-b61b-248f52c8d9e7.rna_seq.transcriptome.gdc_realn.bam 18773302545 BAM transcriptome harmonized CPTAC3 e72b850a-f46a-47b5-b330-f3f7e563ad6d f056dd13e6da918510ac013d62a66b9e { 'aliquot_tag': 'ALQ_c34e5354', 'gdc_sample_type': 'Recurrent Tumor' } +C283515.RNA-Seq.transcriptome.T.hg38 C283515 GBM RNA-Seq tumor 7316UP-504-1104814 0ddbbaae-9242-4ded-a7fd-b6d12c4b12b6.rna_seq.transcriptome.gdc_realn.bam 19716562028 BAM transcriptome harmonized CPTAC3 832d14ca-506e-4b78-93b2-1fa4d857ba90 9d384715b4e781467ad51bc34c0b195b { 'aliquot_tag': 'ALQ_f082514a', 'gdc_sample_type': 'Primary Tumor' } C283515.WGS.N C283515 GBM WGS blood_normal 7316UP-504-1105290 7316UP-504-1105290.WholeGenome.RP-2158.bam 62174322060 BAM aligned CPTAC3 7055e943-91d1-49a2-9191-e55ab3342d77 f131f1eafa114d3fb6290627ae38941f { 'aliquot_tag': 'ALQ_8a1dfde8', 'gdc_sample_type': 'Blood Derived Normal' } +C283515.WGS.N.hg38 C283515 GBM WGS blood_normal 7316UP-504-1105290 da35ca10-4e9e-4188-9b4e-ca18d4fa1471_wgs_gdc_realn.bam 189605242037 BAM harmonized CPTAC3 64ff8172-9477-49e2-aab6-53ed112aa73c 8631a0fc11e7da3cbf6e12372b5dddbb { 'aliquot_tag': 'ALQ_8a1dfde8', 'gdc_sample_type': 'Blood Derived Normal' } C283515.WGS.R C283515 GBM WGS recurrent_tumor 7316UP-984-1105238 7316UP-984-1105238.WholeGenome.RP-2158.bam 52101605944 BAM aligned CPTAC3 02afa2ed-7278-4978-828d-79cc756ab420 44bdf05312430f53b2a3db3e035eb1aa { 'aliquot_tag': 'ALQ_67e44f63', 'gdc_sample_type': 'Recurrent Tumor' } +C283515.WGS.R.hg38 C283515 GBM WGS recurrent_tumor 7316UP-984-1105238 a2d2d8dc-08c5-4deb-8129-51b2cfc557fd_wgs_gdc_realn.bam 156734344990 BAM harmonized CPTAC3 d3eb1721-73d8-4f03-a305-0751b0da55ca 69930aa1e1727d71dc45833cd2ab330f { 'aliquot_tag': 'ALQ_67e44f63', 'gdc_sample_type': 'Recurrent Tumor' } C283515.WXS.N C283515 GBM WXS blood_normal 7316UP-504-1105290 7316UP-504-1105290.WholeExome.RP-1303.bam 30160128143 BAM aligned CPTAC3 57eb649b-72ad-45ff-81a0-def3c0c38505 fc4b503aefc35200b0d5bd0cf28e6603 { 'aliquot_tag': 'ALQ_8a1dfde8', 'gdc_sample_type': 'Blood Derived Normal' } +C283515.WXS.N.hg38 C283515 GBM WXS blood_normal 7316UP-504-1105290 da35ca10-4e9e-4188-9b4e-ca18d4fa1471_wxs_gdc_realn.bam 40814897842 BAM harmonized CPTAC3 679408e2-ec25-4d10-add0-74685052f3f9 8b5ff6d930c2c4a45565ccc5ce6fabc2 { 'aliquot_tag': 'ALQ_8a1dfde8', 'gdc_sample_type': 'Blood Derived Normal' } C283515.WXS.R C283515 GBM WXS recurrent_tumor 7316UP-984-1105238 7316UP-984-1105238.WholeExome.RP-1303.bam 23037540650 BAM aligned CPTAC3 ced68fb8-edc5-4d38-9719-92d95bc271e2 859bc500872b17eb12a8f526187a918c { 'aliquot_tag': 'ALQ_67e44f63', 'gdc_sample_type': 'Recurrent Tumor' } +C283515.WXS.R.hg38 C283515 GBM WXS recurrent_tumor 7316UP-984-1105238 a2d2d8dc-08c5-4deb-8129-51b2cfc557fd_wxs_gdc_realn.bam 31071829645 BAM harmonized CPTAC3 fea11175-c790-4201-9d99-141f860b9db7 61b3c9bc3a9a18a8e00e8ac245e930c7 { 'aliquot_tag': 'ALQ_67e44f63', 'gdc_sample_type': 'Recurrent Tumor' } C283515.WXS.T C283515 GBM WXS tumor 7316UP-504-1105193 7316UP-504-1105193.WholeExome.RP-1303.bam 20800549103 BAM aligned CPTAC3 87308625-5842-4300-9202-99ba70be896c 2a7feccbefc6149e138f275c9ed84120 { 'aliquot_tag': 'ALQ_1152120b', 'gdc_sample_type': 'Primary Tumor' } +C283515.WXS.T.hg38 C283515 GBM WXS tumor 7316UP-504-1105193 e251ee1d-1c35-4852-89fe-50fc2a4ac948_wxs_gdc_realn.bam 28429320980 BAM harmonized CPTAC3 5aa549bf-6059-4691-9a1a-dc2e334019b0 9c1e35a723770f901d91c9ff8f526175 { 'aliquot_tag': 'ALQ_1152120b', 'gdc_sample_type': 'Primary Tumor' } C287328.DUP_182ecc01.WGS.R C287328 GBM WGS recurrent_tumor 7316UP-1135 7316UP-1135.WholeGenome.RP-2158.bam 53870261548 BAM aligned CPTAC3 027df95d-7ce1-400b-bfbd-cc83e17b3d36 a64b2c596f6b949358c720da3bc13709 { 'aliquot_tag': 'DUP_182ecc01', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C287328.DUP_182ecc01.WGS.R.hg38 C287328 GBM WGS recurrent_tumor 7316UP-1135 60ab3dbf-0ea9-415f-b3f9-ece94aa19527_wgs_gdc_realn.bam 150326239194 BAM harmonized CPTAC3 ac862633-7552-4aeb-87be-e495530b4d2a ac3319b04d60c3806e2c8d6928310364 { 'aliquot_tag': 'DUP_182ecc01', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C287328.DUP_3dba5939.MethArray.Green.T C287328 GBM Methylation Array tumor 7316UP-534 205854140169_R07C01_Grn.idat 13677901 IDAT Green NA CPTAC3 4b16a4f5-e3d9-4e0f-ba76-8958d4bdbb1d 31184fd8c96812e40ed5edbb55695e95 { 'aliquot_tag': 'DUP_3dba5939', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C287328.DUP_3dba5939.MethArray.Red.T C287328 GBM Methylation Array tumor 7316UP-534 205854140169_R07C01_Red.idat 13677901 IDAT Red NA CPTAC3 49f15721-6812-4e14-9501-6f457865857e 72f7da59a1b554faa9e67f8308a8ef6b { 'aliquot_tag': 'DUP_3dba5939', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C287328.miRNA-Seq.R C287328 GBM miRNA-Seq recurrent_tumor 7316UP-1135-1104790 210817_UNC31-K00269_0302_AHLCTHBBXY_TTAGGC_S42_L002_R1_001.unaln.bam 319199191 BAM unaligned CPTAC3 2fa9a70d-1712-496a-9d14-4e6f844aa5e6 d6c1e358d22ebe37c6b9535913b9a776 { 'aliquot_tag': 'ALQ_bb530617', 'gdc_sample_type': 'Recurrent Tumor' } +C287328.miRNA-Seq.R.hg38 C287328 GBM miRNA-Seq recurrent_tumor 7316UP-1135-1104790 777da03c-ca29-4efd-b7c2-4649e0ec4077_mirnaseq_gdc_realn.bam 369364097 BAM harmonized CPTAC3 39f3d534-e8b3-4249-89dd-f3a39a6046aa 9d96509c88b6b9dbf5486fc1c2c7d647 { 'aliquot_tag': 'ALQ_bb530617', 'gdc_sample_type': 'Recurrent Tumor' } C287328.miRNA-Seq.T C287328 GBM miRNA-Seq tumor 7316UP-534-1104760 210817_UNC31-K00269_0302_AHLCTHBBXY_GTTTCG_S21_L001_R1_001.unaln.bam 184222286 BAM unaligned CPTAC3 18e06801-e85c-4849-be82-e07ac019cad0 9f9fc54c80582aea95011acf17584bc7 { 'aliquot_tag': 'ALQ_58c5ffaa', 'gdc_sample_type': 'Primary Tumor' } -C287328.RNA-Seq.R1_L001.R C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R1_001.fastq.gz 3650680707 FASTQ R1_L001 unaligned CPTAC3 1500544e-8a1a-4d0d-a855-c856fd31993b 229fc5ee36a221a91f1159576d80a1ee { 'aliquot_tag': 'ALQ_bb530617', 'gdc_sample_type': 'Recurrent Tumor' } -C287328.RNA-Seq.R1_L001.T C287328 GBM RNA-Seq tumor 7316UP-534-1104760 210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R1_001.fastq.gz 4021895606 FASTQ R1_L001 unaligned CPTAC3 fc4ea868-9a1a-4f67-b490-3bdf3c5f6f57 58b126fcbf37c33292d56137155292c3 { 'aliquot_tag': 'ALQ_58c5ffaa', 'gdc_sample_type': 'Primary Tumor' } -C287328.RNA-Seq.R2_L001.R C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R2_001.fastq.gz 4282999398 FASTQ R2_L001 unaligned CPTAC3 60d74915-2063-4467-930b-7845844fbd7b cb3087afa930b32fd23922a9c623fadf { 'aliquot_tag': 'ALQ_bb530617', 'gdc_sample_type': 'Recurrent Tumor' } -C287328.RNA-Seq.R2_L001.T C287328 GBM RNA-Seq tumor 7316UP-534-1104760 210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R2_001.fastq.gz 4377680066 FASTQ R2_L001 unaligned CPTAC3 7bd1a599-d790-46ba-8d41-5c9532d1d232 ba61722d8b1b8d6d26596de4f1ef9a95 { 'aliquot_tag': 'ALQ_58c5ffaa', 'gdc_sample_type': 'Primary Tumor' } +C287328.miRNA-Seq.T.hg38 C287328 GBM miRNA-Seq tumor 7316UP-534-1104760 9b407be1-010b-4c13-be84-c2dbacb91487_mirnaseq_gdc_realn.bam 213128225 BAM harmonized CPTAC3 960726d8-2892-4644-a503-cd3db12b5264 2a2cfb79f30162f33200e30fdcd83405 { 'aliquot_tag': 'ALQ_58c5ffaa', 'gdc_sample_type': 'Primary Tumor' } +C287328.RNA-Seq.chimeric.R.hg38 C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 2b789888-42a5-44e2-90b9-76bf9f99b99d.rna_seq.chimeric.gdc_realn.bam 60013403 BAM chimeric harmonized CPTAC3 7ba8b976-b83f-43da-b05f-cb77b0b32c3a a773957cabcb5a859ded9e69a9845dd1 { 'aliquot_tag': 'ALQ_bb530617', 'gdc_sample_type': 'Recurrent Tumor' } +C287328.RNA-Seq.chimeric.T.hg38 C287328 GBM RNA-Seq tumor 7316UP-534-1104760 d88e1ef5-3e4b-4c03-8da0-dfec2ee1b5b6.rna_seq.chimeric.gdc_realn.bam 154629104 BAM chimeric harmonized CPTAC3 03258bd7-d683-4dc8-bd6e-e6d1ee6e7e13 5ebb5aa37fb2e67342713c1b1b495db4 { 'aliquot_tag': 'ALQ_58c5ffaa', 'gdc_sample_type': 'Primary Tumor' } +C287328.RNA-Seq.genomic.R.hg38 C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 2b789888-42a5-44e2-90b9-76bf9f99b99d.rna_seq.genomic.gdc_realn.bam 10333048636 BAM genomic harmonized CPTAC3 da1d494b-44f0-4d5a-8782-4747759fb8be ce300bb3dcb2859d7f6cfd7e18251278 { 'aliquot_tag': 'ALQ_bb530617', 'gdc_sample_type': 'Recurrent Tumor' } +C287328.RNA-Seq.genomic.T.hg38 C287328 GBM RNA-Seq tumor 7316UP-534-1104760 d88e1ef5-3e4b-4c03-8da0-dfec2ee1b5b6.rna_seq.genomic.gdc_realn.bam 8476784443 BAM genomic harmonized CPTAC3 aaf5ce71-ec46-4424-a311-501e099d4b44 2e1c4bd66980dd615a5f87e1dfe121ea { 'aliquot_tag': 'ALQ_58c5ffaa', 'gdc_sample_type': 'Primary Tumor' } +C287328.RNA-Seq.R1_L001.R C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R1_001.fastq.gz 3650680707 FASTQ R1_L001 unaligned CPTAC3 1500544e-8a1a-4d0d-a855-c856fd31993b 229fc5ee36a221a91f1159576d80a1ee { 'aliquot_tag': 'ALQ_bb530617', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L001' } +C287328.RNA-Seq.R1_L001.T C287328 GBM RNA-Seq tumor 7316UP-534-1104760 210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R1_001.fastq.gz 4021895606 FASTQ R1_L001 unaligned CPTAC3 fc4ea868-9a1a-4f67-b490-3bdf3c5f6f57 58b126fcbf37c33292d56137155292c3 { 'aliquot_tag': 'ALQ_58c5ffaa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C287328.RNA-Seq.R2_L001.R C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 210811_UNC31-K00269_0301_AHLLC5BBXY_GGAGCGTC-GTCCGTGC_S4_L001_R2_001.fastq.gz 4282999398 FASTQ R2_L001 unaligned CPTAC3 60d74915-2063-4467-930b-7845844fbd7b cb3087afa930b32fd23922a9c623fadf { 'aliquot_tag': 'ALQ_bb530617', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L001' } +C287328.RNA-Seq.R2_L001.T C287328 GBM RNA-Seq tumor 7316UP-534-1104760 210713_UNC32-K00270_0291_AHLK5VBBXY_TTACAGGA-TGACAAGC_S4_L001_R2_001.fastq.gz 4377680066 FASTQ R2_L001 unaligned CPTAC3 7bd1a599-d790-46ba-8d41-5c9532d1d232 ba61722d8b1b8d6d26596de4f1ef9a95 { 'aliquot_tag': 'ALQ_58c5ffaa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C287328.RNA-Seq.transcriptome.R.hg38 C287328 GBM RNA-Seq recurrent_tumor 7316UP-1135-1104790 2b789888-42a5-44e2-90b9-76bf9f99b99d.rna_seq.transcriptome.gdc_realn.bam 12437782701 BAM transcriptome harmonized CPTAC3 c27b66ae-17a0-433b-932f-95f65c86ed75 090f806dd83c1e9e88cf8261c680d5c3 { 'aliquot_tag': 'ALQ_bb530617', 'gdc_sample_type': 'Recurrent Tumor' } +C287328.RNA-Seq.transcriptome.T.hg38 C287328 GBM RNA-Seq tumor 7316UP-534-1104760 d88e1ef5-3e4b-4c03-8da0-dfec2ee1b5b6.rna_seq.transcriptome.gdc_realn.bam 16569774458 BAM transcriptome harmonized CPTAC3 11a248ab-ba9d-4dbb-8a94-05c70d9dd30a e212c6e224c05f133352edc8766ad938 { 'aliquot_tag': 'ALQ_58c5ffaa', 'gdc_sample_type': 'Primary Tumor' } C287328.WGS.T C287328 GBM WGS tumor 7316UP-534-1105223 7316UP-534-1105223.WholeGenome.RP-2158.bam 61841060561 BAM aligned CPTAC3 2f8bfbdb-c5ab-49f7-a398-3130a8a0f9ff 710f86254a1a9e9a702ceaaa9309c532 { 'aliquot_tag': 'ALQ_1bd7ce9a', 'gdc_sample_type': 'Primary Tumor' } +C287328.WGS.T.hg38 C287328 GBM WGS tumor 7316UP-534-1105223 198d468f-807f-4fbc-80c3-db5d8d0b859f_wgs_gdc_realn.bam 182584284428 BAM harmonized CPTAC3 a3bcdd86-6bcb-408f-ba68-c4e56a8110ba 6510f6f33772d6d2c099f6216b400a88 { 'aliquot_tag': 'ALQ_1bd7ce9a', 'gdc_sample_type': 'Primary Tumor' } C287328.WXS.N C287328 GBM WXS blood_normal 7316UP-534-1105211 7316UP-534-1105211.WholeExome.RP-1303.bam 26048801345 BAM aligned CPTAC3 aa55c9e6-5f54-4642-a1f3-aa5110440f74 5dca536e5e11f8efadaadb3d771773d0 { 'aliquot_tag': 'ALQ_def4fc75', 'gdc_sample_type': 'Blood Derived Normal' } +C287328.WXS.N.hg38 C287328 GBM WXS blood_normal 7316UP-534-1105211 45e6c90a-cad9-48e8-825c-524447251d9d_wxs_gdc_realn.bam 35548163635 BAM harmonized CPTAC3 15e46e1d-5773-424e-9e9b-3707fd58322a 5f0b304e25a5054dcd3d2f02eb26b297 { 'aliquot_tag': 'ALQ_def4fc75', 'gdc_sample_type': 'Blood Derived Normal' } C287328.WXS.R C287328 GBM WXS recurrent_tumor 7316UP-1135-1105253 7316UP-1135-1105253.WholeExome.RP-1303.bam 23940352912 BAM aligned CPTAC3 3c2e153d-dd81-4764-b6fd-a067c9a47d00 aa015c300f779af99554699383c99e68 { 'aliquot_tag': 'ALQ_3098bd2f', 'gdc_sample_type': 'Recurrent Tumor' } +C287328.WXS.R.hg38 C287328 GBM WXS recurrent_tumor 7316UP-1135-1105253 d95e214e-46ad-4a63-b086-330764303d0d_wxs_gdc_realn.bam 32463143532 BAM harmonized CPTAC3 0767b6c1-462b-482e-ae62-eead44df14b1 b27b580825b0ad97623eb1450a0f4573 { 'aliquot_tag': 'ALQ_3098bd2f', 'gdc_sample_type': 'Recurrent Tumor' } C287328.WXS.T C287328 GBM WXS tumor 7316UP-534-1105223 7316UP-534-1105223.WholeExome.RP-1303.bam 22424204561 BAM aligned CPTAC3 0a3a21a5-e572-44f0-ad0b-3adcd908f5c9 95beb26fb18fa9b6d5521c618c2fd0c5 { 'aliquot_tag': 'ALQ_1bd7ce9a', 'gdc_sample_type': 'Primary Tumor' } +C287328.WXS.T.hg38 C287328 GBM WXS tumor 7316UP-534-1105223 198d468f-807f-4fbc-80c3-db5d8d0b859f_wxs_gdc_realn.bam 30300912433 BAM harmonized CPTAC3 bc0a38db-f504-49c1-b50f-25b1cc7af943 617d9b9a27b328d30a365d63c5b8039f { 'aliquot_tag': 'ALQ_1bd7ce9a', 'gdc_sample_type': 'Primary Tumor' } C289419.DUP_4747d148.MethArray.Green.R C289419 GBM Methylation Array recurrent_tumor 7316UP-587 205705520096_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 583ac14a-de77-42ed-8d3f-6baf457b0e47 b846053f197573329034273b1aa86a4e { 'aliquot_tag': 'DUP_4747d148', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C289419.DUP_4747d148.MethArray.Red.R C289419 GBM Methylation Array recurrent_tumor 7316UP-587 205705520096_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 3323405a-948f-4042-80d5-2378ea7dedb7 02449a07c8599bc956fea32a0df1c222 { 'aliquot_tag': 'DUP_4747d148', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C289419.DUP_4747d148.WGS.R C289419 GBM WGS recurrent_tumor 7316UP-587 7316UP-587.WholeGenome.RP-2158.bam 55102241327 BAM aligned CPTAC3 78c622ca-de9d-4208-9ee5-7c5be7e50bcd c51145d3c43b87a842dddf9679f9f666 { 'aliquot_tag': 'DUP_4747d148', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C289419.DUP_4747d148.WGS.R.hg38 C289419 GBM WGS recurrent_tumor 7316UP-587 475005fe-89ac-4683-9abc-a6b861063f3d_wgs_gdc_realn.bam 163224253840 BAM harmonized CPTAC3 fdce7121-072b-4afc-bb06-141ac3a6abc3 31ed465910ff2a44bc04e0cdd258790e { 'aliquot_tag': 'DUP_4747d148', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C289419.DUP_4747d148.WXS.R C289419 GBM WXS recurrent_tumor 7316UP-587 7316UP-587.WholeExome.RP-1303.bam 25018513643 BAM aligned CPTAC3 77a7e8d5-aa0f-4598-891a-4bd243f8d40d b7dc79e71b7b53f82af6dcb4cbb2ee22 { 'aliquot_tag': 'DUP_4747d148', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C289419.DUP_4747d148.WXS.R.hg38 C289419 GBM WXS recurrent_tumor 7316UP-587 475005fe-89ac-4683-9abc-a6b861063f3d_wxs_gdc_realn.bam 86608571475 BAM harmonized CPTAC3 161cc500-79dd-44f1-a3be-d36f93361df7 1e7dd8bc3b0ed243891bc86fd7c0f2fe { 'aliquot_tag': 'DUP_4747d148', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C289419.DUP_ebf29e44.MethArray.Green.T C289419 GBM Methylation Array tumor 7316UP-547 205555380097_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ed9668f6-8b96-4536-975f-51fc578f4702 ff7166a175272594659db42e8fbf97ad { 'aliquot_tag': 'DUP_ebf29e44', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C289419.DUP_ebf29e44.MethArray.Red.T C289419 GBM Methylation Array tumor 7316UP-547 205555380097_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 06ca8f2e-4333-44c5-992a-44533882b195 8174e4829fdc0d2f4c083428d2a0bfd0 { 'aliquot_tag': 'DUP_ebf29e44', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C289419.DUP_ebf29e44.WGS.T C289419 GBM WGS tumor 7316UP-547 7316UP-547.WholeGenome.RP-2158.bam 54186350616 BAM aligned CPTAC3 fb931cb0-6b32-4e8f-b0b9-8bc0f8097750 597eddbc14f6e0d0f7df3b8918a88b3d { 'aliquot_tag': 'DUP_ebf29e44', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C289419.DUP_ebf29e44.WGS.T.hg38 C289419 GBM WGS tumor 7316UP-547 4d704111-c691-4670-b26a-c087157c5729_wgs_gdc_realn.bam 162941984332 BAM harmonized CPTAC3 87df8153-1621-45ef-84f6-475e6b344c45 86d0f1ae54c3427fe8bcb74c8ba3630d { 'aliquot_tag': 'DUP_ebf29e44', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C289419.DUP_ebf29e44.WXS.T C289419 GBM WXS tumor 7316UP-547 7316UP-547.WholeExome.RP-1303.bam 41078607528 BAM aligned CPTAC3 cc5a2977-b9a0-4292-9f2e-7e2fc2f183da 1773a62155a9c13ed4f01b9dd9af3c63 { 'aliquot_tag': 'DUP_ebf29e44', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C289419.DUP_ebf29e44.WXS.T.hg38 C289419 GBM WXS tumor 7316UP-547 4d704111-c691-4670-b26a-c087157c5729_wxs_gdc_realn.bam 57598635661 BAM harmonized CPTAC3 56d4c848-6cf4-4228-ad97-d3ab5056812d 1d2468e27f9d57ec272c6106350b1131 { 'aliquot_tag': 'DUP_ebf29e44', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C289419.miRNA-Seq.R C289419 GBM miRNA-Seq recurrent_tumor 7316UP-587-1104762 210817_UNC31-K00269_0302_AHLCTHBBXY_GAGTGG_S16_L001_R1_001.unaln.bam 358193007 BAM unaligned CPTAC3 5c73e592-f5eb-461c-99c2-99d834cf8749 02e20b5d1c54f84a5eb198af8bdd6cf3 { 'aliquot_tag': 'ALQ_77a659b4', 'gdc_sample_type': 'Recurrent Tumor' } +C289419.miRNA-Seq.R.hg38 C289419 GBM miRNA-Seq recurrent_tumor 7316UP-587-1104762 8f969309-dc45-40b0-b623-00f7d7895b73_mirnaseq_gdc_realn.bam 420583627 BAM harmonized CPTAC3 2515679a-16a4-4c48-8e7c-27778bccf3ec 057ff54cef6050a312dd966d33054057 { 'aliquot_tag': 'ALQ_77a659b4', 'gdc_sample_type': 'Recurrent Tumor' } C289419.miRNA-Seq.T C289419 GBM miRNA-Seq tumor 7316UP-547-1104805 210817_UNC31-K00269_0302_AHLCTHBBXY_GTCCGC_S18_L003_R1_001.unaln.bam 189609311 BAM unaligned CPTAC3 03b0c8c5-4ebc-43dc-b603-8b14995f8831 934836fc337e4e87305a531b0d5d8628 { 'aliquot_tag': 'ALQ_aef8cc22', 'gdc_sample_type': 'Primary Tumor' } -C289419.RNA-Seq.R1_L005.T C289419 GBM RNA-Seq tumor 7316UP-547-1104805 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R1_001.fastq.gz 3682036039 FASTQ R1_L005 unaligned CPTAC3 31e45219-fd63-4028-9ca3-e3fa1ca82f60 c4ac7bb02c993a73d08b25f155dd0b73 { 'aliquot_tag': 'ALQ_aef8cc22', 'gdc_sample_type': 'Primary Tumor' } -C289419.RNA-Seq.R2_L005.T C289419 GBM RNA-Seq tumor 7316UP-547-1104805 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R2_001.fastq.gz 3881768353 FASTQ R2_L005 unaligned CPTAC3 cd0e07cb-3358-4e26-88fa-5cc0839cda33 daa166c1651c07a9f6cbb173c0f67278 { 'aliquot_tag': 'ALQ_aef8cc22', 'gdc_sample_type': 'Primary Tumor' } +C289419.miRNA-Seq.T.hg38 C289419 GBM miRNA-Seq tumor 7316UP-547-1104805 38fa8f97-9447-4e3e-b7bf-6fa003e798bc_mirnaseq_gdc_realn.bam 217779080 BAM harmonized CPTAC3 c5b80362-7fad-4c2b-a7ac-83abe32e9c3f 3e701c905cb6921fe6730cfe887ab932 { 'aliquot_tag': 'ALQ_aef8cc22', 'gdc_sample_type': 'Primary Tumor' } +C289419.RNA-Seq.chimeric.T.hg38 C289419 GBM RNA-Seq tumor 7316UP-547-1104805 afb84018-67dd-49c4-9dea-c79ade77b3ab.rna_seq.chimeric.gdc_realn.bam 72317694 BAM chimeric harmonized CPTAC3 11b3a88b-5a03-4efb-95e7-d9a67cb204c4 bc548b3fbea02a43d4f0c3cfc61a91f3 { 'aliquot_tag': 'ALQ_aef8cc22', 'gdc_sample_type': 'Primary Tumor' } +C289419.RNA-Seq.genomic.T.hg38 C289419 GBM RNA-Seq tumor 7316UP-547-1104805 afb84018-67dd-49c4-9dea-c79ade77b3ab.rna_seq.genomic.gdc_realn.bam 7955591268 BAM genomic harmonized CPTAC3 ae9fdcdd-bfb0-402d-9231-fb9cd8ec8544 916faea0ceea9e3e3235b423c701de64 { 'aliquot_tag': 'ALQ_aef8cc22', 'gdc_sample_type': 'Primary Tumor' } +C289419.RNA-Seq.R1_L005.T C289419 GBM RNA-Seq tumor 7316UP-547-1104805 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R1_001.fastq.gz 3682036039 FASTQ R1_L005 unaligned CPTAC3 31e45219-fd63-4028-9ca3-e3fa1ca82f60 c4ac7bb02c993a73d08b25f155dd0b73 { 'aliquot_tag': 'ALQ_aef8cc22', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C289419.RNA-Seq.R2_L005.T C289419 GBM RNA-Seq tumor 7316UP-547-1104805 210713_UNC32-K00270_0291_AHLK5VBBXY_GGCTTAAG-TCGTGACC_S18_L005_R2_001.fastq.gz 3881768353 FASTQ R2_L005 unaligned CPTAC3 cd0e07cb-3358-4e26-88fa-5cc0839cda33 daa166c1651c07a9f6cbb173c0f67278 { 'aliquot_tag': 'ALQ_aef8cc22', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C289419.RNA-Seq.transcriptome.T.hg38 C289419 GBM RNA-Seq tumor 7316UP-547-1104805 afb84018-67dd-49c4-9dea-c79ade77b3ab.rna_seq.transcriptome.gdc_realn.bam 15674380411 BAM transcriptome harmonized CPTAC3 a8417476-7393-4f8f-9daa-215648417fa7 1153c3c1da2acca1bd8ad4069a7e6acf { 'aliquot_tag': 'ALQ_aef8cc22', 'gdc_sample_type': 'Primary Tumor' } C289419.WGS.N C289419 GBM WGS blood_normal 7316UP-587-1105213 7316UP-587-1105213.WholeGenome.RP-2158.bam 52502221675 BAM aligned CPTAC3 e90c2130-4037-4410-8cb5-da284867906a d56b3b3bb5560ba9fe58e74871ce6f12 { 'aliquot_tag': 'ALQ_f1975a6b', 'gdc_sample_type': 'Blood Derived Normal' } +C289419.WGS.N.hg38 C289419 GBM WGS blood_normal 7316UP-587-1105213 6d9ca0ff-6baf-4667-aada-5fc3f89a2cc0_wgs_gdc_realn.bam 152202150533 BAM harmonized CPTAC3 3206bc3b-648f-40f0-90d4-3914a2173ae6 23fd00960729f7e47d97f48dac532e06 { 'aliquot_tag': 'ALQ_f1975a6b', 'gdc_sample_type': 'Blood Derived Normal' } C289419.WGS.R C289419 GBM WGS recurrent_tumor 7316UP-587-1105225 7316UP-587-1105225.WholeGenome.RP-2158.bam 56534424736 BAM aligned CPTAC3 3ae88dfc-f9c8-465c-8f37-74196b627a80 70f5e0df7a795a4db9ea993fc3f5f8f6 { 'aliquot_tag': 'ALQ_33d9ac9d', 'gdc_sample_type': 'Recurrent Tumor' } +C289419.WGS.R.hg38 C289419 GBM WGS recurrent_tumor 7316UP-587-1105225 cc0ee50b-2361-4e4a-ba62-b66137405b80_wgs_gdc_realn.bam 159336122594 BAM harmonized CPTAC3 387f2766-5e69-4ca0-a98f-76ea8bac00a3 b4bb791e43434adfbe8bbde7b56139b6 { 'aliquot_tag': 'ALQ_33d9ac9d', 'gdc_sample_type': 'Recurrent Tumor' } C289419.WGS.T C289419 GBM WGS tumor 7316UP-547-1105270 7316UP-547-1105270.WholeGenome.RP-2158.bam 54527158005 BAM aligned CPTAC3 849c3fa9-d265-4a34-b1c5-a6130045cb7a 1f87f8293ae9164dbbe959327d6cf54e { 'aliquot_tag': 'ALQ_24f84cd9', 'gdc_sample_type': 'Primary Tumor' } +C289419.WGS.T.hg38 C289419 GBM WGS tumor 7316UP-547-1105270 1db3a7f3-a22c-4898-82e3-8957c1238080_wgs_gdc_realn.bam 158317583519 BAM harmonized CPTAC3 66088cb3-52d4-4923-80d8-c9f6467076ab 0af2da871705865d2ed9bbbfd873dcb0 { 'aliquot_tag': 'ALQ_24f84cd9', 'gdc_sample_type': 'Primary Tumor' } C289419.WXS.N C289419 GBM WXS blood_normal 7316UP-587-1105213 7316UP-587-1105213.WholeExome.RP-1303.bam 25496316378 BAM aligned CPTAC3 d0e8eefb-202d-4629-9acd-a94b4e1864a9 f0e7da22f9e92d614643f3de6a965016 { 'aliquot_tag': 'ALQ_f1975a6b', 'gdc_sample_type': 'Blood Derived Normal' } +C289419.WXS.N.hg38 C289419 GBM WXS blood_normal 7316UP-587-1105213 6d9ca0ff-6baf-4667-aada-5fc3f89a2cc0_wxs_gdc_realn.bam 34647910087 BAM harmonized CPTAC3 2d7988a7-00be-41aa-89f9-05b70794185e 8e6c36a0088904377baa04a3b34e4c45 { 'aliquot_tag': 'ALQ_f1975a6b', 'gdc_sample_type': 'Blood Derived Normal' } C289419.WXS.R C289419 GBM WXS recurrent_tumor 7316UP-587-1105225 7316UP-587-1105225.WholeExome.RP-1303.bam 22476273863 BAM aligned CPTAC3 39fd310f-e21d-484e-8764-95478d310803 be5b306cd0b545b5d3e9b9423d825f0d { 'aliquot_tag': 'ALQ_33d9ac9d', 'gdc_sample_type': 'Recurrent Tumor' } +C289419.WXS.R.hg38 C289419 GBM WXS recurrent_tumor 7316UP-587-1105225 cc0ee50b-2361-4e4a-ba62-b66137405b80_wxs_gdc_realn.bam 30749277855 BAM harmonized CPTAC3 a3be227a-3efb-49fb-b435-1885f567a6e5 9e3a772df0d6106592442d4fdd8faabc { 'aliquot_tag': 'ALQ_33d9ac9d', 'gdc_sample_type': 'Recurrent Tumor' } C289419.WXS.T C289419 GBM WXS tumor 7316UP-547-1105270 7316UP-547-1105270.WholeExome.RP-1303.bam 27840699156 BAM aligned CPTAC3 a28c6ed4-40bd-415b-b9c7-590a62ec8555 4f192acbc7a33bd084063a0e6de9ab52 { 'aliquot_tag': 'ALQ_24f84cd9', 'gdc_sample_type': 'Primary Tumor' } +C289419.WXS.T.hg38 C289419 GBM WXS tumor 7316UP-547-1105270 1db3a7f3-a22c-4898-82e3-8957c1238080_wxs_gdc_realn.bam 38434530527 BAM harmonized CPTAC3 7ca5f822-55be-4e81-81e4-5542cf2b6fe1 415deb3fc0d9dedd75888f8d951c99d6 { 'aliquot_tag': 'ALQ_24f84cd9', 'gdc_sample_type': 'Primary Tumor' } C298152.DUP_59d69c3d.MethArray.Green.R C298152 GBM Methylation Array recurrent_tumor 7316UP-574 205555380064_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 edaada5d-7321-4231-ad85-c55ca06dd1f0 fc651c84f9143e9d3cb969da5084bacd { 'aliquot_tag': 'DUP_59d69c3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C298152.DUP_59d69c3d.MethArray.Red.R C298152 GBM Methylation Array recurrent_tumor 7316UP-574 205555380064_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 23407a16-a55f-4ac6-9250-7ce0718eca1f 786c81259392e0ac00b88d4feb94457f { 'aliquot_tag': 'DUP_59d69c3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C298152.DUP_59d69c3d.WGS.R C298152 GBM WGS recurrent_tumor 7316UP-574 7316UP-574.WholeGenome.RP-2158.bam 63229930879 BAM aligned CPTAC3 28e504fa-7e48-49d6-84bd-6f5ab234a166 1a2d41be9ed8fdd547ea211146b54333 { 'aliquot_tag': 'DUP_59d69c3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C298152.DUP_59d69c3d.WGS.R.hg38 C298152 GBM WGS recurrent_tumor 7316UP-574 7130d870-9836-4df0-a895-94a82a91781a_wgs_gdc_realn.bam 190684301834 BAM harmonized CPTAC3 e7c01984-0f48-489b-8644-5e8b61780d1a b2e6e1c7569b79655ee53130d3aa5d8a { 'aliquot_tag': 'DUP_59d69c3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C298152.DUP_59d69c3d.WXS.R C298152 GBM WXS recurrent_tumor 7316UP-574 7316UP-574.WholeExome.RP-1303.bam 22111980929 BAM aligned CPTAC3 39dcc1cd-5629-4b3b-9842-e60f92135a92 d0e7aa642f1dcfb5ab6cdf5567663ed4 { 'aliquot_tag': 'DUP_59d69c3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C298152.DUP_59d69c3d.WXS.R.hg38 C298152 GBM WXS recurrent_tumor 7316UP-574 7130d870-9836-4df0-a895-94a82a91781a_wxs_gdc_realn.bam 30062262908 BAM harmonized CPTAC3 2f2efdd7-991e-4ea9-96e0-e166ec2aa41b 5e1ca43bf089a5b7eaa0a1c6000622b1 { 'aliquot_tag': 'DUP_59d69c3d', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C298152.DUP_cb6d6363.MethArray.Green.T C298152 GBM Methylation Array tumor 7316UP-426 205854150030_R01C01_Grn.idat 13677903 IDAT Green NA CPTAC3 67b08732-3e8e-443c-a0ff-890c3d056538 d23037edf01388fa9b3628ff39337e42 { 'aliquot_tag': 'DUP_cb6d6363', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C298152.DUP_cb6d6363.MethArray.Red.T C298152 GBM Methylation Array tumor 7316UP-426 205854150030_R01C01_Red.idat 13677903 IDAT Red NA CPTAC3 84143f71-2af0-4fb1-84df-83d52574634d 6754a885a5cb2dbfdf33354c0df6e3ee { 'aliquot_tag': 'DUP_cb6d6363', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C298152.DUP_cb6d6363.WGS.T C298152 GBM WGS tumor 7316UP-426 7316UP-426.WholeGenome.RP-2158.bam 58796212790 BAM aligned CPTAC3 6cce2775-8b95-4d16-9214-9c8ea3941e00 ba0ee3e9e28eaaaf258434659d568a9f { 'aliquot_tag': 'DUP_cb6d6363', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C298152.DUP_cb6d6363.WGS.T.hg38 C298152 GBM WGS tumor 7316UP-426 2359e710-f546-4a7d-9b12-c9c3028c8b92_wgs_gdc_realn.bam 175199001890 BAM harmonized CPTAC3 fddc2fe2-8b91-4754-bf9c-cb63b03f66ae 88598256707fd8a08dbfc78aa78c8e5d { 'aliquot_tag': 'DUP_cb6d6363', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C298152.DUP_cb6d6363.WXS.T C298152 GBM WXS tumor 7316UP-426 7316UP-426.WholeExome.RP-1303.bam 29302896556 BAM aligned CPTAC3 7d0482ee-89c1-4be6-80d5-b182cac71f87 84f5f9e3cb5183ba0a37b845535cdf96 { 'aliquot_tag': 'DUP_cb6d6363', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C298152.DUP_cb6d6363.WXS.T.hg38 C298152 GBM WXS tumor 7316UP-426 2359e710-f546-4a7d-9b12-c9c3028c8b92_wxs_gdc_realn.bam 39654770362 BAM harmonized CPTAC3 96617688-1ee2-4e4a-b128-6e170cee9966 8e7d71c36ad0999daad8eb8ea266fe65 { 'aliquot_tag': 'DUP_cb6d6363', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C298152.miRNA-Seq.R C298152 GBM miRNA-Seq recurrent_tumor 7316UP-574-1104761 210817_UNC31-K00269_0302_AHLCTHBBXY_CGTACG_S13_L001_R1_001.unaln.bam 259115918 BAM unaligned CPTAC3 9dcdfaea-d092-42e1-a687-95d151494b95 ce3ef63625f6f336770eea431e71dc86 { 'aliquot_tag': 'ALQ_26296f46', 'gdc_sample_type': 'Recurrent Tumor' } +C298152.miRNA-Seq.R.hg38 C298152 GBM miRNA-Seq recurrent_tumor 7316UP-574-1104761 a7688766-868f-4b62-b5e8-34c2a5d55256_mirnaseq_gdc_realn.bam 299273196 BAM harmonized CPTAC3 91799c2b-02c3-4303-9427-3dd47f4acaf1 3ca45c3c34aa1585baf25c847e1a166d { 'aliquot_tag': 'ALQ_26296f46', 'gdc_sample_type': 'Recurrent Tumor' } C298152.miRNA-Seq.T C298152 GBM miRNA-Seq tumor 7316UP-426-1104798 210817_UNC31-K00269_0302_AHLCTHBBXY_GGCTAC_S32_L002_R1_001.unaln.bam 323725172 BAM unaligned CPTAC3 13875ba7-959b-4cf8-950a-80da1a1fce6c e00929cd3417534f37b281689e6dccd3 { 'aliquot_tag': 'ALQ_d13cf72f', 'gdc_sample_type': 'Primary Tumor' } -C298152.RNA-Seq.R1_L002.R C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3775818479 FASTQ R1_L002 unaligned CPTAC3 cc854351-5e28-4fa1-ba76-ab67e8069f29 a1efd734093839f29919f5946bf12066 { 'aliquot_tag': 'ALQ_26296f46', 'gdc_sample_type': 'Recurrent Tumor' } -C298152.RNA-Seq.R1_L005.T C298152 GBM RNA-Seq tumor 7316UP-426-1104798 210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R1_001.fastq.gz 4161951146 FASTQ R1_L005 unaligned CPTAC3 dbcc610d-609b-4631-a7fb-ce1d9879e0a1 d6288d6b5fc855cf5d326a658a70c4c6 { 'aliquot_tag': 'ALQ_d13cf72f', 'gdc_sample_type': 'Primary Tumor' } -C298152.RNA-Seq.R2_L002.R C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R2_001.fastq.gz 4074073377 FASTQ R2_L002 unaligned CPTAC3 114ff49b-5eae-4fa1-8beb-1f4ae9cd8638 e349aa1bad948aafbbb6f63629cc8078 { 'aliquot_tag': 'ALQ_26296f46', 'gdc_sample_type': 'Recurrent Tumor' } -C298152.RNA-Seq.R2_L005.T C298152 GBM RNA-Seq tumor 7316UP-426-1104798 210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R2_001.fastq.gz 4490884067 FASTQ R2_L005 unaligned CPTAC3 96a07c32-d50d-48da-b9da-fdd6b37eac1c 45cf661e35c8c83818097b8cc6ff1945 { 'aliquot_tag': 'ALQ_d13cf72f', 'gdc_sample_type': 'Primary Tumor' } +C298152.miRNA-Seq.T.hg38 C298152 GBM miRNA-Seq tumor 7316UP-426-1104798 3a90dd24-dab0-492d-b2a5-aef0575221ce_mirnaseq_gdc_realn.bam 379104263 BAM harmonized CPTAC3 f6d87ff9-7cf0-45b9-b81e-4f0643ef93ff 6634fdbdc3ad6400852be5d3d6c8e0e7 { 'aliquot_tag': 'ALQ_d13cf72f', 'gdc_sample_type': 'Primary Tumor' } +C298152.RNA-Seq.chimeric.R.hg38 C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 5bbc662c-9cad-4613-914e-41801669d647.rna_seq.chimeric.gdc_realn.bam 57710791 BAM chimeric harmonized CPTAC3 4f6eee50-b75d-4cb5-850d-6e5d1c0935a4 6d5e30c4321ec01e1b4e6cda8fac3e62 { 'aliquot_tag': 'ALQ_26296f46', 'gdc_sample_type': 'Recurrent Tumor' } +C298152.RNA-Seq.chimeric.T.hg38 C298152 GBM RNA-Seq tumor 7316UP-426-1104798 a37a71d0-a7d4-4a12-8be7-02b24311261f.rna_seq.chimeric.gdc_realn.bam 138598553 BAM chimeric harmonized CPTAC3 433783fb-5b4d-41bd-9d2b-11e1aa75f5bd 9059407aee331cc59efa70c633e2f0d7 { 'aliquot_tag': 'ALQ_d13cf72f', 'gdc_sample_type': 'Primary Tumor' } +C298152.RNA-Seq.genomic.R.hg38 C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 5bbc662c-9cad-4613-914e-41801669d647.rna_seq.genomic.gdc_realn.bam 8402037730 BAM genomic harmonized CPTAC3 a95076f7-665f-4db1-bd24-92df0fab9f9d 81d677a79efa836e021742c99ff0ca2e { 'aliquot_tag': 'ALQ_26296f46', 'gdc_sample_type': 'Recurrent Tumor' } +C298152.RNA-Seq.genomic.T.hg38 C298152 GBM RNA-Seq tumor 7316UP-426-1104798 a37a71d0-a7d4-4a12-8be7-02b24311261f.rna_seq.genomic.gdc_realn.bam 9092434487 BAM genomic harmonized CPTAC3 d550de2a-003c-4124-93d9-ecb3bc8ae815 5b34f2a1f44db529a2416d34f0156765 { 'aliquot_tag': 'ALQ_d13cf72f', 'gdc_sample_type': 'Primary Tumor' } +C298152.RNA-Seq.R1_L002.R C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3775818479 FASTQ R1_L002 unaligned CPTAC3 cc854351-5e28-4fa1-ba76-ab67e8069f29 a1efd734093839f29919f5946bf12066 { 'aliquot_tag': 'ALQ_26296f46', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L002' } +C298152.RNA-Seq.R1_L005.T C298152 GBM RNA-Seq tumor 7316UP-426-1104798 210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R1_001.fastq.gz 4161951146 FASTQ R1_L005 unaligned CPTAC3 dbcc610d-609b-4631-a7fb-ce1d9879e0a1 d6288d6b5fc855cf5d326a658a70c4c6 { 'aliquot_tag': 'ALQ_d13cf72f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C298152.RNA-Seq.R2_L002.R C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 210713_UNC32-K00270_0291_AHLK5VBBXY_TCCAACGC-TTGGACTT_S8_L002_R2_001.fastq.gz 4074073377 FASTQ R2_L002 unaligned CPTAC3 114ff49b-5eae-4fa1-8beb-1f4ae9cd8638 e349aa1bad948aafbbb6f63629cc8078 { 'aliquot_tag': 'ALQ_26296f46', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L002' } +C298152.RNA-Seq.R2_L005.T C298152 GBM RNA-Seq tumor 7316UP-426-1104798 210811_UNC31-K00269_0301_AHLLC5BBXY_GATCTATC-ATGAGGCT_S19_L005_R2_001.fastq.gz 4490884067 FASTQ R2_L005 unaligned CPTAC3 96a07c32-d50d-48da-b9da-fdd6b37eac1c 45cf661e35c8c83818097b8cc6ff1945 { 'aliquot_tag': 'ALQ_d13cf72f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C298152.RNA-Seq.transcriptome.R.hg38 C298152 GBM RNA-Seq recurrent_tumor 7316UP-574-1104761 5bbc662c-9cad-4613-914e-41801669d647.rna_seq.transcriptome.gdc_realn.bam 17759110838 BAM transcriptome harmonized CPTAC3 c8a10008-2b2b-40e5-b0ed-1b56073ab93f d68cf029185bebcbc508e9d0a71befe8 { 'aliquot_tag': 'ALQ_26296f46', 'gdc_sample_type': 'Recurrent Tumor' } +C298152.RNA-Seq.transcriptome.T.hg38 C298152 GBM RNA-Seq tumor 7316UP-426-1104798 a37a71d0-a7d4-4a12-8be7-02b24311261f.rna_seq.transcriptome.gdc_realn.bam 16035355872 BAM transcriptome harmonized CPTAC3 3e7aee56-96b3-4835-a10c-b08ee18db184 ac3790e2ea90a1ced79981a5a7ffd77d { 'aliquot_tag': 'ALQ_d13cf72f', 'gdc_sample_type': 'Primary Tumor' } C298152.WGS.N C298152 GBM WGS blood_normal 7316UP-426-1105208 7316UP-426-1105208.WholeGenome.RP-2158.bam 52239643037 BAM aligned CPTAC3 9ff18167-b8d3-4e22-9eb1-629b71ec9e77 a15b0b8109d677e2370d43cb3fb6333e { 'aliquot_tag': 'ALQ_be89e9e8', 'gdc_sample_type': 'Blood Derived Normal' } +C298152.WGS.N.hg38 C298152 GBM WGS blood_normal 7316UP-426-1105208 d4007c3c-2941-40e3-a88d-57c532441433_wgs_gdc_realn.bam 152595568147 BAM harmonized CPTAC3 d58f2823-1d0b-4d87-a8cf-60d3880cad66 a8921378597d2f8871525aa2b2847aa7 { 'aliquot_tag': 'ALQ_be89e9e8', 'gdc_sample_type': 'Blood Derived Normal' } C298152.WGS.R C298152 GBM WGS recurrent_tumor 7316UP-574-1105224 7316UP-574-1105224.WholeGenome.RP-2158.bam 41014723398 BAM aligned CPTAC3 c820d71e-45d9-42a5-afb5-f663772bf93d 082d90ab89f83e5c7d1ada5af831b00e { 'aliquot_tag': 'ALQ_8c58fb43', 'gdc_sample_type': 'Recurrent Tumor' } +C298152.WGS.R.hg38 C298152 GBM WGS recurrent_tumor 7316UP-574-1105224 5474e855-4847-4ff2-a327-8538e6c5b855_wgs_gdc_realn.bam 120088532371 BAM harmonized CPTAC3 d90a6d1d-8815-4c36-bf25-7ac3437c9dc7 b83c3e505aeb361609c124d5af7edcf0 { 'aliquot_tag': 'ALQ_8c58fb43', 'gdc_sample_type': 'Recurrent Tumor' } C298152.WGS.T C298152 GBM WGS tumor 7316UP-426-1105263 7316UP-426-1105263.WholeGenome.RP-2158.bam 49286697852 BAM aligned CPTAC3 deecc9f5-4d5e-4279-8878-4dcf92b9cfee bf1510636c4b5b3ff54cfe5b7c7d406c { 'aliquot_tag': 'ALQ_7f0197e6', 'gdc_sample_type': 'Primary Tumor' } +C298152.WGS.T.hg38 C298152 GBM WGS tumor 7316UP-426-1105263 45164d3a-0a7f-498f-a025-eae34981591f_wgs_gdc_realn.bam 144012196964 BAM harmonized CPTAC3 32e43bb8-4fb5-4435-99b0-f09f6f817dd0 e51d20ce4d30ade18f4081a28ea3c014 { 'aliquot_tag': 'ALQ_7f0197e6', 'gdc_sample_type': 'Primary Tumor' } C298152.WXS.N C298152 GBM WXS blood_normal 7316UP-426-1105208 7316UP-426-1105208.WholeExome.RP-1303.bam 25672742169 BAM aligned CPTAC3 7d887a99-c66a-4607-90ca-bb8dfd2859f6 e7f60cbe275f19228a27c22a4b43cd23 { 'aliquot_tag': 'ALQ_be89e9e8', 'gdc_sample_type': 'Blood Derived Normal' } +C298152.WXS.N.hg38 C298152 GBM WXS blood_normal 7316UP-426-1105208 d4007c3c-2941-40e3-a88d-57c532441433_wxs_gdc_realn.bam 34782271499 BAM harmonized CPTAC3 353a8df5-cb48-4786-81c4-74d7ad90a33d b50a53536c98c19fc5dc6bc0a008e3c8 { 'aliquot_tag': 'ALQ_be89e9e8', 'gdc_sample_type': 'Blood Derived Normal' } C298152.WXS.R C298152 GBM WXS recurrent_tumor 7316UP-574-1105224 7316UP-574-1105224.WholeExome.RP-1303.bam 22495865946 BAM aligned CPTAC3 f94f3fac-a780-4952-9e78-6e1ef8bbec9d 0e68bc03268af8b4b48bc603833bea35 { 'aliquot_tag': 'ALQ_8c58fb43', 'gdc_sample_type': 'Recurrent Tumor' } +C298152.WXS.R.hg38 C298152 GBM WXS recurrent_tumor 7316UP-574-1105224 5474e855-4847-4ff2-a327-8538e6c5b855_wxs_gdc_realn.bam 30187839362 BAM harmonized CPTAC3 4931cd9f-a5c7-4482-9a7f-702b8eda4ab6 93b1439363e56482638b808097c0f8a2 { 'aliquot_tag': 'ALQ_8c58fb43', 'gdc_sample_type': 'Recurrent Tumor' } C298152.WXS.T C298152 GBM WXS tumor 7316UP-426-1105263 7316UP-426-1105263.WholeExome.RP-1303.bam 23507037727 BAM aligned CPTAC3 df9aa884-5b5b-4f19-89e3-732c4a4a45f3 d9b5e1d6e45d8acc274a4be19ac51d4a { 'aliquot_tag': 'ALQ_7f0197e6', 'gdc_sample_type': 'Primary Tumor' } +C298152.WXS.T.hg38 C298152 GBM WXS tumor 7316UP-426-1105263 45164d3a-0a7f-498f-a025-eae34981591f_wxs_gdc_realn.bam 31745175469 BAM harmonized CPTAC3 83633780-d4aa-48d6-bf32-90efafb8eb91 6a3cf55a938afe32619c18e1acbbf2c7 { 'aliquot_tag': 'ALQ_7f0197e6', 'gdc_sample_type': 'Primary Tumor' } C317832.DUP_4b7f0398.MethArray.Green.T C317832 GBM Methylation Array tumor 7316UP-435 205705520087_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d3bee606-2dd4-4825-8aaf-62a416cbdc44 3f48c6a17d87a4953d197e1ffd0fa080 { 'aliquot_tag': 'DUP_4b7f0398', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C317832.DUP_4b7f0398.MethArray.Red.T C317832 GBM Methylation Array tumor 7316UP-435 205705520087_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 3917878c-105b-473b-bca9-10ebb2572b6e 27747077b0dc4bebc0038a9316758c48 { 'aliquot_tag': 'DUP_4b7f0398', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C317832.DUP_4b7f0398.WGS.T C317832 GBM WGS tumor 7316UP-435 7316UP-435.WholeGenome.RP-2158.bam 53288759776 BAM aligned CPTAC3 e46c08f7-a93d-4c16-b65a-040c13d4e967 5268fb201438283101da1715c0a3d98d { 'aliquot_tag': 'DUP_4b7f0398', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C317832.DUP_4b7f0398.WGS.T.hg38 C317832 GBM WGS tumor 7316UP-435 a8de32a7-4eaf-498c-8b3f-17a2c36aba44_wgs_gdc_realn.bam 160872598512 BAM harmonized CPTAC3 90d89778-ba90-4096-b585-894a2c7a81f2 1b8e6214b88cb7b9ce576374d831cd7b { 'aliquot_tag': 'DUP_4b7f0398', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C317832.DUP_4b7f0398.WXS.T C317832 GBM WXS tumor 7316UP-435 7316UP-435.WholeExome.RP-1303.bam 28697889466 BAM aligned CPTAC3 f7cc3fc4-a124-47a5-8153-75799ffb0d7b 1cf98d6fe9f802bc2e960d58c29c3d8a { 'aliquot_tag': 'DUP_4b7f0398', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C317832.DUP_4b7f0398.WXS.T.hg38 C317832 GBM WXS tumor 7316UP-435 a8de32a7-4eaf-498c-8b3f-17a2c36aba44_wxs_gdc_realn.bam 38774843412 BAM harmonized CPTAC3 5b5d151b-3c7f-423a-9684-a301d78e9be5 04fd3a018e77c40cae34efe02bd3c072 { 'aliquot_tag': 'DUP_4b7f0398', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C317832.MethArray.Green.R C317832 GBM Methylation Array recurrent_tumor 7316UP-1110 205707890105_R02C01_Grn.idat 13677915 IDAT Green NA CPTAC3 c1a97839-5772-45fa-91e7-426e00766c41 1d3cf81fbea33c2bdfe529ca75754a4e { 'aliquot_tag': 'ALQ_5a725a0c', 'gdc_sample_type': 'Recurrent Tumor' } C317832.MethArray.Red.R C317832 GBM Methylation Array recurrent_tumor 7316UP-1110 205707890105_R02C01_Red.idat 13677915 IDAT Red NA CPTAC3 3710e0b6-75b9-466e-ba27-ee1120dca7e5 b4dc0f7f1242031ec281e7599ef03dda { 'aliquot_tag': 'ALQ_5a725a0c', 'gdc_sample_type': 'Recurrent Tumor' } C317832.WGS.N C317832 GBM WGS blood_normal 7316UP-435-1105209 7316UP-435-1105209.WholeGenome.RP-2158.bam 50849044617 BAM aligned CPTAC3 91c2215c-9340-4ea4-a15e-783589faf7b6 5f75808e11126920dfc3de0631e194bd { 'aliquot_tag': 'ALQ_1fc18e85', 'gdc_sample_type': 'Blood Derived Normal' } +C317832.WGS.N.hg38 C317832 GBM WGS blood_normal 7316UP-435-1105209 304f74bd-879e-4f3c-bdb4-46d22910393e_wgs_gdc_realn.bam 153978766927 BAM harmonized CPTAC3 0fa25367-cd71-4bee-a9ce-c0487935bf1a 78ead454bfe95122ee9c6cef48b94146 { 'aliquot_tag': 'ALQ_1fc18e85', 'gdc_sample_type': 'Blood Derived Normal' } C317832.WGS.R C317832 GBM WGS recurrent_tumor 7316UP-1110 7316UP-1110.WholeGenome.RP-2158.bam 56423818859 BAM aligned CPTAC3 02482033-178d-4b98-a21e-18bcd9afb7b1 3975b29b666a7d917f8fb6c2078c99a0 { 'aliquot_tag': 'ALQ_5a725a0c', 'gdc_sample_type': 'Recurrent Tumor' } +C317832.WGS.R.hg38 C317832 GBM WGS recurrent_tumor 7316UP-1110 3c191d52-d917-4258-97ff-2dabca4cf093_wgs_gdc_realn.bam 173377160966 BAM harmonized CPTAC3 b5586575-0b82-4089-9cc3-20236ae7f701 98ab8f4e1d4bc72f0b1c5b40a6a78ceb { 'aliquot_tag': 'ALQ_5a725a0c', 'gdc_sample_type': 'Recurrent Tumor' } C317832.WGS.T C317832 GBM WGS tumor 7316UP-435-1105196 7316UP-435-1105196.WholeGenome.RP-2158.bam 44958525818 BAM aligned CPTAC3 84e61057-d0fb-4f04-b775-d961860a52f4 07cce07c15dcefaa9c313ada9d20d0f1 { 'aliquot_tag': 'ALQ_5cfa9604', 'gdc_sample_type': 'Primary Tumor' } +C317832.WGS.T.hg38 C317832 GBM WGS tumor 7316UP-435-1105196 88fc297c-04d4-4bbe-885c-794e65593177_wgs_gdc_realn.bam 133085101660 BAM harmonized CPTAC3 6c345d12-741e-4e98-abfd-337cc774d958 1282fec44ab93ffbcdd71fa7814eac82 { 'aliquot_tag': 'ALQ_5cfa9604', 'gdc_sample_type': 'Primary Tumor' } C317832.WXS.N C317832 GBM WXS blood_normal 7316UP-435-1105209 7316UP-435-1105209.WholeExome.RP-1303.bam 26556342235 BAM aligned CPTAC3 dcb115cc-591d-4eb6-a360-64d4b9d86ef8 31456f5e09f8ed511edbdd6a0646c2ce { 'aliquot_tag': 'ALQ_1fc18e85', 'gdc_sample_type': 'Blood Derived Normal' } +C317832.WXS.N.hg38 C317832 GBM WXS blood_normal 7316UP-435-1105209 304f74bd-879e-4f3c-bdb4-46d22910393e_wxs_gdc_realn.bam 36135119685 BAM harmonized CPTAC3 2c9924aa-a2fe-4497-ad2d-c730d2f900b5 c7ff4648bf118a492abf66395a7adef8 { 'aliquot_tag': 'ALQ_1fc18e85', 'gdc_sample_type': 'Blood Derived Normal' } C317832.WXS.R C317832 GBM WXS recurrent_tumor 7316UP-1110 7316UP-1110.WholeExome.RP-1303.bam 27081556019 BAM aligned CPTAC3 e447bddd-4fa5-4877-993f-40f7483e19ee 1f7687a300143d6162d55f88efeae176 { 'aliquot_tag': 'ALQ_5a725a0c', 'gdc_sample_type': 'Recurrent Tumor' } +C317832.WXS.R.hg38 C317832 GBM WXS recurrent_tumor 7316UP-1110 3c191d52-d917-4258-97ff-2dabca4cf093_wxs_gdc_realn.bam 36664412702 BAM harmonized CPTAC3 00db774a-2523-429b-9601-fdae463fcf73 c54f6f333989b0f6b41f7ec2c68c69a4 { 'aliquot_tag': 'ALQ_5a725a0c', 'gdc_sample_type': 'Recurrent Tumor' } C317832.WXS.T C317832 GBM WXS tumor 7316UP-435-1105196 7316UP-435-1105196.WholeExome.RP-1303.bam 27481233727 BAM aligned CPTAC3 e02a9123-6688-4178-8677-89fd8134cc3d 9facaec81129600431524af4a6ec85f7 { 'aliquot_tag': 'ALQ_5cfa9604', 'gdc_sample_type': 'Primary Tumor' } +C317832.WXS.T.hg38 C317832 GBM WXS tumor 7316UP-435-1105196 88fc297c-04d4-4bbe-885c-794e65593177_wxs_gdc_realn.bam 37645362593 BAM harmonized CPTAC3 a3eb79f6-7744-45d2-b66f-8ab2c0a4a670 26392d603ca5f88c08f64f445a8a3141 { 'aliquot_tag': 'ALQ_5cfa9604', 'gdc_sample_type': 'Primary Tumor' } C330255.DUP_cf2197af.MethArray.Green.R C330255 GBM Methylation Array recurrent_tumor 7316UP-498 205555380064_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 f056898d-a62b-41cf-8f41-e1f747de335a 44606b8afb25eef11bd58a01f2683361 { 'aliquot_tag': 'DUP_cf2197af', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C330255.DUP_cf2197af.MethArray.Red.R C330255 GBM Methylation Array recurrent_tumor 7316UP-498 205555380064_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 ef26f124-b6ed-42f6-8513-fba0981a6ffa 3db0ae3d87767243ed30bac608b469aa { 'aliquot_tag': 'DUP_cf2197af', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C330255.DUP_cf2197af.WGS.R C330255 GBM WGS recurrent_tumor 7316UP-498 7316UP-498.WholeGenome.RP-2158.bam 50663364089 BAM aligned CPTAC3 1a97001f-3f96-4ab2-bafd-7f78447b6c12 6b11c21a0d16e74fe97ddd71179977f4 { 'aliquot_tag': 'DUP_cf2197af', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C330255.DUP_cf2197af.WGS.R.hg38 C330255 GBM WGS recurrent_tumor 7316UP-498 cb5aa7cc-7710-4fdd-8180-2cf07fe00743_wgs_gdc_realn.bam 152493800449 BAM harmonized CPTAC3 34ec7de0-79a0-48e5-b5f1-1665a77af068 c5ed7a9e54e74fc4e058b297bce8821c { 'aliquot_tag': 'DUP_cf2197af', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C330255.DUP_cf2197af.WXS.R C330255 GBM WXS recurrent_tumor 7316UP-498 7316UP-498.WholeExome.RP-1303.bam 26484461682 BAM aligned CPTAC3 876d22c5-5f4b-4d94-809c-6dab7df175e2 458841e0faa96bc69c5c974c2184b6dc { 'aliquot_tag': 'DUP_cf2197af', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C330255.DUP_cf2197af.WXS.R.hg38 C330255 GBM WXS recurrent_tumor 7316UP-498 cb5aa7cc-7710-4fdd-8180-2cf07fe00743_wxs_gdc_realn.bam 36005302764 BAM harmonized CPTAC3 b563109a-5b09-47e5-b33e-f23abc5582f9 57ce2f0c321240879802212bf3fc665a { 'aliquot_tag': 'DUP_cf2197af', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C330255.MethArray.Green.T C330255 GBM Methylation Array tumor 7316UP-361 205828590014_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 64be93e0-6886-4934-8215-1862791c5289 ca3f840a220234545df0e6700047cd9c { 'aliquot_tag': 'ALQ_342a2541', 'gdc_sample_type': 'Primary Tumor' } C330255.MethArray.Red.T C330255 GBM Methylation Array tumor 7316UP-361 205828590014_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 b781886f-f6d3-460f-96ba-f4bd9a8ae3ab 548700e0ab84223a9b30cab09345804f { 'aliquot_tag': 'ALQ_342a2541', 'gdc_sample_type': 'Primary Tumor' } C330255.miRNA-Seq.R C330255 GBM miRNA-Seq recurrent_tumor 7316UP-498-1104769 210817_UNC31-K00269_0302_AHLCTHBBXY_CACCGG_S5_L001_R1_001.unaln.bam 70142423 BAM unaligned CPTAC3 8528346e-31c6-4861-bbca-ffa7da3dceb4 4e984059155327af142c59e423bd886c { 'aliquot_tag': 'ALQ_1181fb13', 'gdc_sample_type': 'Recurrent Tumor' } -C330255.RNA-Seq.R1_L003.R C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R1_001.fastq.gz 3725717285 FASTQ R1_L003 unaligned CPTAC3 ecde968c-8d85-48f1-9b99-adf4c4f9c39c 127d378f32cb62f791b7c600c1a1d704 { 'aliquot_tag': 'ALQ_1181fb13', 'gdc_sample_type': 'Recurrent Tumor' } -C330255.RNA-Seq.R2_L003.R C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R2_001.fastq.gz 3991687450 FASTQ R2_L003 unaligned CPTAC3 7d238885-5196-4422-9eed-12e61f4703be e4d93028a0615706eb24a91adebefa20 { 'aliquot_tag': 'ALQ_1181fb13', 'gdc_sample_type': 'Recurrent Tumor' } +C330255.miRNA-Seq.R.hg38 C330255 GBM miRNA-Seq recurrent_tumor 7316UP-498-1104769 11cbdb74-6fe6-4d57-b070-ec7470bed595_mirnaseq_gdc_realn.bam 79795498 BAM harmonized CPTAC3 b7949a06-9676-4f42-963a-c589cd811445 a243d0d81f66eb91727a4b731a9ef13f { 'aliquot_tag': 'ALQ_1181fb13', 'gdc_sample_type': 'Recurrent Tumor' } +C330255.RNA-Seq.chimeric.R.hg38 C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 45b0d6c6-78a6-4f3c-b528-9e61eaf5488b.rna_seq.chimeric.gdc_realn.bam 55456025 BAM chimeric harmonized CPTAC3 7842c4ec-cfa3-4461-a175-a49490a49bb9 3de373548a51fc3c5a5dff3e425a0f35 { 'aliquot_tag': 'ALQ_1181fb13', 'gdc_sample_type': 'Recurrent Tumor' } +C330255.RNA-Seq.genomic.R.hg38 C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 45b0d6c6-78a6-4f3c-b528-9e61eaf5488b.rna_seq.genomic.gdc_realn.bam 7897525386 BAM genomic harmonized CPTAC3 f8c38202-af21-4e32-8b8f-0f39f4596057 1123c3095a6c764f0df7d5db38111047 { 'aliquot_tag': 'ALQ_1181fb13', 'gdc_sample_type': 'Recurrent Tumor' } +C330255.RNA-Seq.R1_L003.R C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R1_001.fastq.gz 3725717285 FASTQ R1_L003 unaligned CPTAC3 ecde968c-8d85-48f1-9b99-adf4c4f9c39c 127d378f32cb62f791b7c600c1a1d704 { 'aliquot_tag': 'ALQ_1181fb13', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L003' } +C330255.RNA-Seq.R2_L003.R C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 210713_UNC32-K00270_0291_AHLK5VBBXY_GGTACCTT-AAGACGTC_S12_L003_R2_001.fastq.gz 3991687450 FASTQ R2_L003 unaligned CPTAC3 7d238885-5196-4422-9eed-12e61f4703be e4d93028a0615706eb24a91adebefa20 { 'aliquot_tag': 'ALQ_1181fb13', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L003' } +C330255.RNA-Seq.transcriptome.R.hg38 C330255 GBM RNA-Seq recurrent_tumor 7316UP-498-1104769 45b0d6c6-78a6-4f3c-b528-9e61eaf5488b.rna_seq.transcriptome.gdc_realn.bam 16547318557 BAM transcriptome harmonized CPTAC3 9d8eba1e-f23a-4be4-b161-3492044fb7ef 91a95ba03572d2c12f45eeb72ef3a3d6 { 'aliquot_tag': 'ALQ_1181fb13', 'gdc_sample_type': 'Recurrent Tumor' } C330255.WGS.N C330255 GBM WGS blood_normal 7316UP-361-1105212 7316UP-361-1105212.WholeGenome.RP-2158.bam 52965115662 BAM aligned CPTAC3 9a9eccce-70b8-4e66-85ab-24ec1508dee3 a4475bc46c1d95e0ba198b380171a8c2 { 'aliquot_tag': 'ALQ_3f6e987', 'gdc_sample_type': 'Blood Derived Normal' } +C330255.WGS.N.hg38 C330255 GBM WGS blood_normal 7316UP-361-1105212 bd2a9034-9ef8-4f68-a2e7-cde91706a385_wgs_gdc_realn.bam 159124658027 BAM harmonized CPTAC3 417d7c29-a3f8-4a79-b384-d053f4b7051f 7653112000dea1c8a144b5ac92037e25 { 'aliquot_tag': 'ALQ_3f6e987', 'gdc_sample_type': 'Blood Derived Normal' } C330255.WGS.R C330255 GBM WGS recurrent_tumor 7316UP-498-1105232 7316UP-498-1105232.WholeGenome.RP-2158.bam 74755089697 BAM aligned CPTAC3 b958b9b4-1eff-4e71-ad0a-4c94548031bd 3577cd298869d9ba1cc20b817d9f6929 { 'aliquot_tag': 'ALQ_45537350', 'gdc_sample_type': 'Recurrent Tumor' } +C330255.WGS.R.hg38 C330255 GBM WGS recurrent_tumor 7316UP-498-1105232 13c5f1a2-7dd1-4951-a439-0901fb185e09_wgs_gdc_realn.bam 219426984821 BAM harmonized CPTAC3 89cbb37f-6652-4958-bf54-c796ac87b1f2 5414826ef41319e279cb42b74d13b701 { 'aliquot_tag': 'ALQ_45537350', 'gdc_sample_type': 'Recurrent Tumor' } C330255.WGS.T C330255 GBM WGS tumor 7316UP-361 7316UP-361.WholeGenome.RP-2158.bam 58000841700 BAM aligned CPTAC3 c9c95e92-ea1e-4469-b76e-fadaab18848e 95d987bc52732f9878887fe72ceb0c5c { 'aliquot_tag': 'ALQ_342a2541', 'gdc_sample_type': 'Primary Tumor' } +C330255.WGS.T.hg38 C330255 GBM WGS tumor 7316UP-361 cad8ffba-1e4f-4f8f-9378-0bd507f2444a_wgs_gdc_realn.bam 171243999389 BAM harmonized CPTAC3 e809e615-2a38-4ebb-bb20-51d162b52ce6 ff4655cd31b5daec55c1c5175ffc0ec1 { 'aliquot_tag': 'ALQ_342a2541', 'gdc_sample_type': 'Primary Tumor' } C330255.WXS.N C330255 GBM WXS blood_normal 7316UP-361-1105212 7316UP-361-1105212.WholeExome.RP-1303.bam 25256547678 BAM aligned CPTAC3 0a15376d-7a40-4bdb-a9b1-df6a0096be32 e8fb639a3aab2e4cad717bd947e4e349 { 'aliquot_tag': 'ALQ_3f6e987', 'gdc_sample_type': 'Blood Derived Normal' } +C330255.WXS.N.hg38 C330255 GBM WXS blood_normal 7316UP-361-1105212 bd2a9034-9ef8-4f68-a2e7-cde91706a385_wxs_gdc_realn.bam 34450311649 BAM harmonized CPTAC3 79e34d08-036d-433f-97da-111f791d1978 4d156f82e05baa2099bdc144ce2fee7f { 'aliquot_tag': 'ALQ_3f6e987', 'gdc_sample_type': 'Blood Derived Normal' } C330255.WXS.R C330255 GBM WXS recurrent_tumor 7316UP-498-1105232 7316UP-498-1105232.WholeExome.RP-1303.bam 22564329011 BAM aligned CPTAC3 083f8ddc-75e5-4195-a088-65c614df023a e3fede748f5077274fc1d7a362c9041f { 'aliquot_tag': 'ALQ_45537350', 'gdc_sample_type': 'Recurrent Tumor' } +C330255.WXS.R.hg38 C330255 GBM WXS recurrent_tumor 7316UP-498-1105232 13c5f1a2-7dd1-4951-a439-0901fb185e09_wxs_gdc_realn.bam 30638579982 BAM harmonized CPTAC3 b071f1a3-9555-4530-8a58-09b927aa0b31 05e88fe9c38b53e561b5554f7870d4ca { 'aliquot_tag': 'ALQ_45537350', 'gdc_sample_type': 'Recurrent Tumor' } C330255.WXS.T C330255 GBM WXS tumor 7316UP-361 7316UP-361.WholeExome.RP-1303.bam 47917286279 BAM aligned CPTAC3 2dac6b52-9e5f-4b31-a1b8-aa596110be2e 9b52545903db1810d4a91d365e782e6e { 'aliquot_tag': 'ALQ_342a2541', 'gdc_sample_type': 'Primary Tumor' } +C330255.WXS.T.hg38 C330255 GBM WXS tumor 7316UP-361 cad8ffba-1e4f-4f8f-9378-0bd507f2444a_wxs_gdc_realn.bam 66332593745 BAM harmonized CPTAC3 1342f51b-95be-4e96-9d04-5ce16089b486 98c59a5ed555083d5b491c8f51a9d065 { 'aliquot_tag': 'ALQ_342a2541', 'gdc_sample_type': 'Primary Tumor' } C383391.DUP_4db2e37f.MethArray.Green.T C383391 GBM Methylation Array tumor 7316UP-1108 205854150030_R02C01_Grn.idat 13677903 IDAT Green NA CPTAC3 3521889e-78ca-4e4a-98e7-8c6dd724c00c bcbab84275accce45a336e3e74a66fc2 { 'aliquot_tag': 'DUP_4db2e37f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C383391.DUP_4db2e37f.MethArray.Red.T C383391 GBM Methylation Array tumor 7316UP-1108 205854150030_R02C01_Red.idat 13677903 IDAT Red NA CPTAC3 b9e8aade-469f-46c6-90b2-da1f3c8b802b 21e0f82d171a142997fa16d2290d4299 { 'aliquot_tag': 'DUP_4db2e37f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C383391.DUP_4db2e37f.WGS.T C383391 GBM WGS tumor 7316UP-1108 7316UP-1108.WholeGenome.RP-2158.bam 53823725687 BAM aligned CPTAC3 f06a9ad7-dbaf-432e-bca3-733aa9a56f20 95186712ff2e1473fd0b89c378b46c42 { 'aliquot_tag': 'DUP_4db2e37f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C383391.DUP_4db2e37f.WGS.T.hg38 C383391 GBM WGS tumor 7316UP-1108 0d5862af-2f59-42b9-b6d8-5c1d84d662e9_wgs_gdc_realn.bam 161247811251 BAM harmonized CPTAC3 e8b33610-74f2-4b5b-b067-8128fe7c1d6d d8342c01d821c368d4043f6d265d75db { 'aliquot_tag': 'DUP_4db2e37f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C383391.DUP_4db2e37f.WXS.T C383391 GBM WXS tumor 7316UP-1108 7316UP-1108.WholeExome.RP-1303.bam 27298437644 BAM aligned CPTAC3 48566235-21fb-426d-aca8-c2940c9ff1a4 406338888942b347473a0421bff14c2b { 'aliquot_tag': 'DUP_4db2e37f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C383391.DUP_4db2e37f.WXS.T.hg38 C383391 GBM WXS tumor 7316UP-1108 0d5862af-2f59-42b9-b6d8-5c1d84d662e9_wxs_gdc_realn.bam 36902746545 BAM harmonized CPTAC3 7341902c-8501-419d-a4a6-d88859d9a8d8 3ba39e451bf89be39753b44ac5dd78a9 { 'aliquot_tag': 'DUP_4db2e37f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C383391.DUP_7418231a.miRNA-Seq.R C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1581-1104800 210817_UNC31-K00269_0302_AHLCTHBBXY_AGTCAA_S24_L002_R1_001.unaln.bam 477694077 BAM unaligned CPTAC3 01516117-25ed-48be-8247-f7b972bc9f10 3ccc03623424745c080912bdf78c07ae { 'aliquot_tag': 'DUP_7418231a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } -C383391.DUP_7418231a.RNA-Seq.R1_L004.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R1_001.fastq.gz 4172474327 FASTQ R1_L004 unaligned CPTAC3 02d0d950-c97c-4179-8150-9154a973d456 f6ffbdef7d1b0d9dd73086215cceabe9 { 'aliquot_tag': 'DUP_7418231a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } -C383391.DUP_7418231a.RNA-Seq.R2_L004.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R2_001.fastq.gz 4496680542 FASTQ R2_L004 unaligned CPTAC3 1d3003c2-2047-421b-9d96-18dd27804338 fc40324bfc2e65ab2507d87ee34ae194 { 'aliquot_tag': 'DUP_7418231a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C383391.DUP_7418231a.miRNA-Seq.R.hg38 C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1581-1104800 f72cb349-3949-4734-bbf7-1635337c9418_mirnaseq_gdc_realn.bam 547134343 BAM harmonized CPTAC3 505d5214-da5f-4d92-9c1f-ef10757af546 e48f89f2ee8f65ec6d03b06f2c1bb144 { 'aliquot_tag': 'DUP_7418231a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C383391.DUP_7418231a.RNA-Seq.chimeric.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 481fa577-2de1-4a49-9ee3-ad86b26a7fb5.rna_seq.chimeric.gdc_realn.bam 125167966 BAM chimeric harmonized CPTAC3 4230ea7e-deca-4550-a718-9ecdd8ae6690 e2f85fe93f8c8cc1558c21a4ded5ccc9 { 'aliquot_tag': 'DUP_7418231a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C383391.DUP_7418231a.RNA-Seq.genomic.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 481fa577-2de1-4a49-9ee3-ad86b26a7fb5.rna_seq.genomic.gdc_realn.bam 10428848178 BAM genomic harmonized CPTAC3 152f351f-be9f-4c2d-823a-aeb5fb792399 0eab7fa79449dafc1de6a137cd438aa6 { 'aliquot_tag': 'DUP_7418231a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C383391.DUP_7418231a.RNA-Seq.R1_L004.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R1_001.fastq.gz 4172474327 FASTQ R1_L004 unaligned CPTAC3 02d0d950-c97c-4179-8150-9154a973d456 f6ffbdef7d1b0d9dd73086215cceabe9 { 'aliquot_tag': 'DUP_7418231a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot', 'read': 'R1', 'lane': 'L004' } +C383391.DUP_7418231a.RNA-Seq.R2_L004.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 210713_UNC32-K00270_0291_AHLK5VBBXY_GCACGGAC-GTCTCGCA_S15_L004_R2_001.fastq.gz 4496680542 FASTQ R2_L004 unaligned CPTAC3 1d3003c2-2047-421b-9d96-18dd27804338 fc40324bfc2e65ab2507d87ee34ae194 { 'aliquot_tag': 'DUP_7418231a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot', 'read': 'R2', 'lane': 'L004' } +C383391.DUP_7418231a.RNA-Seq.transcriptome.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1581-1104800 481fa577-2de1-4a49-9ee3-ad86b26a7fb5.rna_seq.transcriptome.gdc_realn.bam 16034224270 BAM transcriptome harmonized CPTAC3 081659c6-8e1f-4173-9841-57ecc2fb2664 25dff08435a7074c6542df368daffb74 { 'aliquot_tag': 'DUP_7418231a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } C383391.DUP_e70392a0.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1581-1105265 7316UP-1581-1105265.WholeGenome.RP-2158.bam 58288588843 BAM aligned CPTAC3 10a5d77e-713b-43a6-93d5-a6e26be1aa59 efd43215c8ba00aa19ee89ee2768172f { 'aliquot_tag': 'DUP_e70392a0', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C383391.DUP_e70392a0.WGS.R.hg38 C383391 GBM WGS recurrent_tumor 7316UP-1581-1105265 4ca00115-595c-4479-b2fc-65fc8f019098_wgs_gdc_realn.bam 163302965467 BAM harmonized CPTAC3 6fad7247-7b54-4d01-bfc4-a7317a7e89a2 6d1d7ad0dc491a00aa8fa5b765431391 { 'aliquot_tag': 'DUP_e70392a0', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C383391.DUP_e70392a0.WXS.R C383391 GBM WXS recurrent_tumor 7316UP-1581-1105265 7316UP-1581-1105265.WholeExome.RP-1303.bam 26619962510 BAM aligned CPTAC3 7904fa5e-78b1-420f-bf6a-1c2297bc7895 a6c1f69cfc343d3053d10fb67a4aadcd { 'aliquot_tag': 'DUP_e70392a0', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C383391.DUP_e70392a0.WXS.R.hg38 C383391 GBM WXS recurrent_tumor 7316UP-1581-1105265 4ca00115-595c-4479-b2fc-65fc8f019098_wxs_gdc_realn.bam 35998073077 BAM harmonized CPTAC3 9787a83d-885f-49df-a7b3-b9ab787174bd a07c127be80b13ed9c58d919053d2449 { 'aliquot_tag': 'DUP_e70392a0', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C383391.DUP_f8dd154c.MethArray.Green.R C383391 GBM Methylation Array recurrent_tumor 7316UP-1766 205705520154_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 dc711e37-2e4a-43c1-ad79-978e25d89615 02640c824fc98eeae20683755f9f8524 { 'aliquot_tag': 'DUP_f8dd154c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C383391.DUP_f8dd154c.MethArray.Red.R C383391 GBM Methylation Array recurrent_tumor 7316UP-1766 205705520154_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 2ec4977d-65bf-435b-acfb-142e5a9199eb 108fd44f259fc9136975baa5e1065574 { 'aliquot_tag': 'DUP_f8dd154c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C383391.DUP_f8dd154c.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1766 7316UP-1766.WholeGenome.RP-2158.bam 57388875090 BAM aligned CPTAC3 75d29a76-a9e8-4a57-b231-22c907d64783 f91acf3d6e5fbabf998e426aaae34369 { 'aliquot_tag': 'DUP_f8dd154c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C383391.DUP_f8dd154c.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1766 7316UP-1766.WholeGenome.RP-2158.bam 57388875090 BAM aligned CPTAC3 92903bf8-833a-4614-a6ea-00fcbb929ffd f91acf3d6e5fbabf998e426aaae34369 { 'aliquot_tag': 'DUP_f8dd154c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C383391.DUP_f8dd154c.WXS.R C383391 GBM WXS recurrent_tumor 7316UP-1766 7316UP-1766.WholeExome.RP-1303.bam 25087107391 BAM aligned CPTAC3 f63db56a-cf7f-49d6-b7ae-e112a8716197 16a5d8357e4fba2670e3901e3eb08093 { 'aliquot_tag': 'DUP_f8dd154c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } +C383391.DUP_f8dd154c.WXS.R.hg38 C383391 GBM WXS recurrent_tumor 7316UP-1766 6b0b63d6-27fe-4b00-b98f-9797af281bca_wxs_gdc_realn.bam 34195042714 BAM harmonized CPTAC3 63475f5d-5f4d-4ec8-9ba0-25c3097029c8 abfc2bf71b43fa2fd024f9c779f5bc13 { 'aliquot_tag': 'DUP_f8dd154c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C383391.miRNA-Seq.R C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1766-1104799 210817_UNC31-K00269_0302_AHLCTHBBXY_CTTGTA_S28_L002_R1_001.unaln.bam 254499278 BAM unaligned CPTAC3 05fbc1ab-b459-443c-a7db-0e45167454f8 42808419f3287876e1fbbe088b7d6766 { 'aliquot_tag': 'ALQ_f59e8371', 'gdc_sample_type': 'Recurrent Tumor' } +C383391.miRNA-Seq.R.hg38 C383391 GBM miRNA-Seq recurrent_tumor 7316UP-1766-1104799 421ed8c5-aeaa-4370-99c0-80cf131453a2_mirnaseq_gdc_realn.bam 298959459 BAM harmonized CPTAC3 9e2d6b7a-f24b-454d-a429-3f1d0ba3455c cc2bab0c22e41825ba522e1cb4d38f18 { 'aliquot_tag': 'ALQ_f59e8371', 'gdc_sample_type': 'Recurrent Tumor' } C383391.miRNA-Seq.T C383391 GBM miRNA-Seq tumor 7316UP-1108-1104809 210817_UNC31-K00269_0302_AHLCTHBBXY_CGTACG_S13_L003_R1_001.unaln.bam 233137947 BAM unaligned CPTAC3 b1b8898e-a098-4374-b71b-ed0554a4e9b9 7ff277f5e6b519f5687b9a0f360ffed9 { 'aliquot_tag': 'ALQ_2691e93', 'gdc_sample_type': 'Primary Tumor' } -C383391.RNA-Seq.R1_L002.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R1_001.fastq.gz 3361626903 FASTQ R1_L002 unaligned CPTAC3 67f1d243-6790-4916-8e93-e9712739d6d2 6464b69d7216ae3c9c480b3d15ffe329 { 'aliquot_tag': 'ALQ_f59e8371', 'gdc_sample_type': 'Recurrent Tumor' } -C383391.RNA-Seq.R1_L007.T C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 210713_UNC32-K00270_0291_AHLK5VBBXY_ATCCACTG-AGGTGCGT_S26_L007_R1_001.fastq.gz 3545435152 FASTQ R1_L007 unaligned CPTAC3 a1cdfb94-8758-4d2b-92bf-db1bac25b7e9 97b9961eb892c507cdddcce58647ee5e { 'aliquot_tag': 'ALQ_2691e93', 'gdc_sample_type': 'Primary Tumor' } -C383391.RNA-Seq.R2_L002.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R2_001.fastq.gz 3793927938 FASTQ R2_L002 unaligned CPTAC3 79a1e05d-5544-4bb7-8d1b-0eb7ba887f43 c885a074cf3689694ee4cc000e8e5aad { 'aliquot_tag': 'ALQ_f59e8371', 'gdc_sample_type': 'Recurrent Tumor' } -C383391.RNA-Seq.R2_L007.T C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 210713_UNC32-K00270_0291_AHLK5VBBXY_ATCCACTG-AGGTGCGT_S26_L007_R2_001.fastq.gz 3726226989 FASTQ R2_L007 unaligned CPTAC3 e25981ec-ac52-4a07-a09e-f82495748135 f5022ed351e414de6244c3b55af62566 { 'aliquot_tag': 'ALQ_2691e93', 'gdc_sample_type': 'Primary Tumor' } +C383391.miRNA-Seq.T.hg38 C383391 GBM miRNA-Seq tumor 7316UP-1108-1104809 a2a41043-2045-469e-96fb-c3b847f0e947_mirnaseq_gdc_realn.bam 263453620 BAM harmonized CPTAC3 5fc9a290-d656-4257-af23-7bf7de94806e 10fc80ac302e0ce288d12a1ddf8ff18d { 'aliquot_tag': 'ALQ_2691e93', 'gdc_sample_type': 'Primary Tumor' } +C383391.RNA-Seq.chimeric.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 c09b1389-568a-4033-9505-e64e0cea4d00.rna_seq.chimeric.gdc_realn.bam 40534685 BAM chimeric harmonized CPTAC3 bf43135f-2c23-4375-beac-54696a80190f 5d8f5a82c786b3922fa0fe82ae220635 { 'aliquot_tag': 'ALQ_f59e8371', 'gdc_sample_type': 'Recurrent Tumor' } +C383391.RNA-Seq.chimeric.T.hg38 C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 98c25ff6-5826-4956-87ca-fc3f89595d09.rna_seq.chimeric.gdc_realn.bam 28904609 BAM chimeric harmonized CPTAC3 56e879f5-098d-4695-bc49-52b8b39aecc3 78dc60c9b9778829eefa31c0dc4b3a29 { 'aliquot_tag': 'ALQ_2691e93', 'gdc_sample_type': 'Primary Tumor' } +C383391.RNA-Seq.genomic.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 c09b1389-568a-4033-9505-e64e0cea4d00.rna_seq.genomic.gdc_realn.bam 9875883138 BAM genomic harmonized CPTAC3 b82c95dc-d7e1-4bfb-9da7-491bfd6d7151 1cd35cf267835c0a0585b261264b3b4f { 'aliquot_tag': 'ALQ_f59e8371', 'gdc_sample_type': 'Recurrent Tumor' } +C383391.RNA-Seq.genomic.T.hg38 C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 98c25ff6-5826-4956-87ca-fc3f89595d09.rna_seq.genomic.gdc_realn.bam 9968773736 BAM genomic harmonized CPTAC3 1deaf9de-16fd-4555-b5c4-f32e6a712ae0 cb012cdd47038dfa5b7870bdcbc628d7 { 'aliquot_tag': 'ALQ_2691e93', 'gdc_sample_type': 'Primary Tumor' } +C383391.RNA-Seq.R1_L002.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R1_001.fastq.gz 3361626903 FASTQ R1_L002 unaligned CPTAC3 67f1d243-6790-4916-8e93-e9712739d6d2 6464b69d7216ae3c9c480b3d15ffe329 { 'aliquot_tag': 'ALQ_f59e8371', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L002' } +C383391.RNA-Seq.R1_L007.T C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 210713_UNC32-K00270_0291_AHLK5VBBXY_ATCCACTG-AGGTGCGT_S26_L007_R1_001.fastq.gz 3545435152 FASTQ R1_L007 unaligned CPTAC3 a1cdfb94-8758-4d2b-92bf-db1bac25b7e9 97b9961eb892c507cdddcce58647ee5e { 'aliquot_tag': 'ALQ_2691e93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C383391.RNA-Seq.R2_L002.R C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 210811_UNC31-K00269_0301_AHLLC5BBXY_ATGGCATG-AAGGTACC_S6_L002_R2_001.fastq.gz 3793927938 FASTQ R2_L002 unaligned CPTAC3 79a1e05d-5544-4bb7-8d1b-0eb7ba887f43 c885a074cf3689694ee4cc000e8e5aad { 'aliquot_tag': 'ALQ_f59e8371', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L002' } +C383391.RNA-Seq.R2_L007.T C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 210713_UNC32-K00270_0291_AHLK5VBBXY_ATCCACTG-AGGTGCGT_S26_L007_R2_001.fastq.gz 3726226989 FASTQ R2_L007 unaligned CPTAC3 e25981ec-ac52-4a07-a09e-f82495748135 f5022ed351e414de6244c3b55af62566 { 'aliquot_tag': 'ALQ_2691e93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C383391.RNA-Seq.transcriptome.R.hg38 C383391 GBM RNA-Seq recurrent_tumor 7316UP-1766-1104799 c09b1389-568a-4033-9505-e64e0cea4d00.rna_seq.transcriptome.gdc_realn.bam 10918153358 BAM transcriptome harmonized CPTAC3 9a41e91a-db60-4c09-9473-1b1ab9c80354 73ecdfd6053f5f9c40d7e64b2195edd6 { 'aliquot_tag': 'ALQ_f59e8371', 'gdc_sample_type': 'Recurrent Tumor' } +C383391.RNA-Seq.transcriptome.T.hg38 C383391 GBM RNA-Seq tumor 7316UP-1108-1104809 98c25ff6-5826-4956-87ca-fc3f89595d09.rna_seq.transcriptome.gdc_realn.bam 15135652948 BAM transcriptome harmonized CPTAC3 7c7f83a8-638f-4f16-849c-5731f693a351 9b679a9c88471ca42194aec4bea213d6 { 'aliquot_tag': 'ALQ_2691e93', 'gdc_sample_type': 'Primary Tumor' } C383391.WGS.R C383391 GBM WGS recurrent_tumor 7316UP-1766-1105264 7316UP-1766-1105264.WholeGenome.RP-2158.bam 56126633437 BAM aligned CPTAC3 7894b548-1983-4d54-85b5-1641d3af56d7 c6e855af105c24ad350bddb5a272a24b { 'aliquot_tag': 'ALQ_b2c0468d', 'gdc_sample_type': 'Recurrent Tumor' } +C383391.WGS.R.hg38 C383391 GBM WGS recurrent_tumor 7316UP-1766-1105264 9898f83f-88c5-4800-b493-492972f33ed4_wgs_gdc_realn.bam 163724138183 BAM harmonized CPTAC3 f5415289-d4cd-4a4d-943f-10e3ce3aa9fb be465c656ccbd21e673dd7468ebb0424 { 'aliquot_tag': 'ALQ_b2c0468d', 'gdc_sample_type': 'Recurrent Tumor' } C383391.WXS.N C383391 GBM WXS blood_normal 7316UP-1108-1105272 7316UP-1108-1105272.WholeExome.RP-1303.bam 24745797287 BAM aligned CPTAC3 c0487dd4-37f2-4c32-93b6-0d0de66c547a afbd0aeb14c30296d4c6493f14e4b2fb { 'aliquot_tag': 'ALQ_6fd1b36f', 'gdc_sample_type': 'Blood Derived Normal' } +C383391.WXS.N.hg38 C383391 GBM WXS blood_normal 7316UP-1108-1105272 64ed74c9-b20e-45aa-85c1-760c4f44451f_wxs_gdc_realn.bam 33659971750 BAM harmonized CPTAC3 5ddee6c2-988a-4b6a-9594-ffc03d9da680 e9d22f28667ef836ab8facfcd18ca399 { 'aliquot_tag': 'ALQ_6fd1b36f', 'gdc_sample_type': 'Blood Derived Normal' } C383391.WXS.R C383391 GBM WXS recurrent_tumor 7316UP-1766-1105264 7316UP-1766-1105264.WholeExome.RP-1303.bam 29360557443 BAM aligned CPTAC3 6dab5b5b-d531-4577-99ae-34db7950f86f 81c59fcd899e2ee779778160b3afc61d { 'aliquot_tag': 'ALQ_b2c0468d', 'gdc_sample_type': 'Recurrent Tumor' } +C383391.WXS.R.hg38 C383391 GBM WXS recurrent_tumor 7316UP-1766-1105264 9898f83f-88c5-4800-b493-492972f33ed4_wxs_gdc_realn.bam 39967648544 BAM harmonized CPTAC3 b621007c-7a1b-48ee-b428-7fb6164b3cec 306a7e09a3dc526b8ce96178fa137f24 { 'aliquot_tag': 'ALQ_b2c0468d', 'gdc_sample_type': 'Recurrent Tumor' } C383391.WXS.T C383391 GBM WXS tumor 7316UP-1108-1105202 7316UP-1108-1105202.WholeExome.RP-1303.bam 27655982134 BAM aligned CPTAC3 49c281c9-1066-4546-828f-5e20879f0238 88fc1d8a859c9730a8b85e90465104d3 { 'aliquot_tag': 'ALQ_209025a8', 'gdc_sample_type': 'Primary Tumor' } +C383391.WXS.T.hg38 C383391 GBM WXS tumor 7316UP-1108-1105202 f7d2db47-e553-4569-b883-51d139f98ef5_wxs_gdc_realn.bam 37962672248 BAM harmonized CPTAC3 cff641f8-776b-4b10-8983-71008ed827f4 7e0c404c1e50d0ab862ab9e6e3cc518a { 'aliquot_tag': 'ALQ_209025a8', 'gdc_sample_type': 'Primary Tumor' } C3L-00001.MethArray.Green.A C3L-00001 LUAD Methylation Array tissue_normal CPT0001590008 203027390118_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 df1ce98e-8ee2-4c56-beb4-0129824b2033 0641f2a152b850b53b2c7cc5dcf34425 { 'aliquot_tag': 'ALQ_edb62f89', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00001.MethArray.Green.T C3L-00001 LUAD Methylation Array tumor CPT0001580165 201557560005_R01C01_Grn.idat 13676234 IDAT Green NA CPTAC3 c41ca2cf-b388-443c-9ca6-b51e9db97b45 739e69d1e358d4bdb485a2e1c8cbc531 { 'aliquot_tag': 'ALQ_f9ffb735', 'gdc_sample_type': 'Primary Tumor' } C3L-00001.MethArray.Red.A C3L-00001 LUAD Methylation Array tissue_normal CPT0001590008 203027390118_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 b5971ca7-ad14-4c3a-9b33-eee83bd40ae3 9e53192a72676c77abb15cd0a508dfbc { 'aliquot_tag': 'ALQ_edb62f89', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -518,12 +911,12 @@ C3L-00001.miRNA-Seq.T C3L-00001 LUAD miRNA-Seq tumor CPT0001580164 181113_UNC31- C3L-00001.miRNA-Seq.T.hg38 C3L-00001 LUAD miRNA-Seq tumor CPT0001580164 5c89811b-9851-41e7-a0c2-a0e5e3090a54_mirnaseq_gdc_realn.bam 216661805 BAM harmonized CPTAC3 61ec239b-7461-44fb-bdb5-24bfe37dc7bd cca923dc83d2bc6598802a48fa22ca63 { 'aliquot_tag': 'ALQ_8ef887a3', 'gdc_sample_type': 'Primary Tumor' } C3L-00001.RNA-Seq.chimeric.A.hg38 C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 a2e1d7d9-0770-4526-90ad-e7e604591758.rna_seq.chimeric.gdc_realn.bam 63975785 BAM chimeric harmonized CPTAC3 85013de0-5d4c-40b2-b83d-611fa037ee0a e1af18c3bb4aae36040a8e1fc30c81d2 { 'aliquot_tag': 'ALQ_93075334', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00001.RNA-Seq.chimeric.T.hg38 C3L-00001 LUAD RNA-Seq tumor CPT0001580164 11b92d63-a1ae-41b3-b4d2-e5fade78d5e7.rna_seq.chimeric.gdc_realn.bam 70180049 BAM chimeric harmonized CPTAC3 7bebe96f-ec5a-4e67-8d0c-9e251ad9c68b 7c924fa5ec507286d56bc32a9d9d4ae2 { 'aliquot_tag': 'ALQ_8ef887a3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00001.RNA-Seq.genomic.A.hg38 C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 a2e1d7d9-0770-4526-90ad-e7e604591758.rna_seq.genomic.gdc_realn.bam 6565001896 BAM genomic harmonized CPTAC3 5dd10769-7bad-4c28-a0a7-ef74f21b6993 42265ab0abc521564a0f3165f6b1707e { 'aliquot_tag': 'ALQ_93075334', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00001.RNA-Seq.genomic.T.hg38 C3L-00001 LUAD RNA-Seq tumor CPT0001580164 11b92d63-a1ae-41b3-b4d2-e5fade78d5e7.rna_seq.genomic.gdc_realn.bam 7865654140 BAM genomic harmonized CPTAC3 47085ad9-55d4-4ed4-9b0f-8c1f295f1290 1579e9b7951d18a0b838ddd28765d47e { 'aliquot_tag': 'ALQ_8ef887a3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00001.RNA-Seq.R1_L004.A C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 171215_UNC32-K00270_0072_AHN3THBBXX_GAGTGG_S12_L004_R1_001.fastq.gz 3170333423 FASTQ R1_L004 unaligned CPTAC3 6f1bf159-5c80-41dc-87c4-593ace9987d6 a4fe58f08f8c0e386d20ef46ffc21158 { 'aliquot_tag': 'ALQ_93075334', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00001.RNA-Seq.R1_L006.T C3L-00001 LUAD RNA-Seq tumor CPT0001580164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L006_R1_001.fastq.gz 3467940463 FASTQ R1_L006 unaligned CPTAC3 8db05676-b96a-466a-bdbc-71db64e64c08 e603da80da9520f6f8f301fc50a344a3 { 'aliquot_tag': 'ALQ_8ef887a3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00001.RNA-Seq.R2_L004.A C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 171215_UNC32-K00270_0072_AHN3THBBXX_GAGTGG_S12_L004_R2_001.fastq.gz 3377969387 FASTQ R2_L004 unaligned CPTAC3 a1647619-4448-4ea8-aa7e-6968fd2f61ad 33b752dd8aee17f45a4d3d22681e88ba { 'aliquot_tag': 'ALQ_93075334', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00001.RNA-Seq.R2_L006.T C3L-00001 LUAD RNA-Seq tumor CPT0001580164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L006_R2_001.fastq.gz 3786676689 FASTQ R2_L006 unaligned CPTAC3 593e3888-d805-403e-813d-c10c9a34d539 015da0c7e5c477ca695055587c288e62 { 'aliquot_tag': 'ALQ_8ef887a3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00001.RNA-Seq.genomic.A.hg38 C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 a2e1d7d9-0770-4526-90ad-e7e604591758.rna_seq.genomic.gdc_realn.bam 6565001896 BAM genomic harmonized CPTAC3 3776ea90-7e8f-4531-886f-d91fd56407a7 42265ab0abc521564a0f3165f6b1707e { 'aliquot_tag': 'ALQ_93075334', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00001.RNA-Seq.genomic.T.hg38 C3L-00001 LUAD RNA-Seq tumor CPT0001580164 11b92d63-a1ae-41b3-b4d2-e5fade78d5e7.rna_seq.genomic.gdc_realn.bam 7865654140 BAM genomic harmonized CPTAC3 bb209fc6-e49c-4dbf-aafd-935fae61ac6f 1579e9b7951d18a0b838ddd28765d47e { 'aliquot_tag': 'ALQ_8ef887a3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00001.RNA-Seq.R1_L004.A C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 171215_UNC32-K00270_0072_AHN3THBBXX_GAGTGG_S12_L004_R1_001.fastq.gz 3170333423 FASTQ R1_L004 unaligned CPTAC3 6f1bf159-5c80-41dc-87c4-593ace9987d6 a4fe58f08f8c0e386d20ef46ffc21158 { 'aliquot_tag': 'ALQ_93075334', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00001.RNA-Seq.R1_L006.T C3L-00001 LUAD RNA-Seq tumor CPT0001580164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L006_R1_001.fastq.gz 3467940463 FASTQ R1_L006 unaligned CPTAC3 8db05676-b96a-466a-bdbc-71db64e64c08 e603da80da9520f6f8f301fc50a344a3 { 'aliquot_tag': 'ALQ_8ef887a3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00001.RNA-Seq.R2_L004.A C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 171215_UNC32-K00270_0072_AHN3THBBXX_GAGTGG_S12_L004_R2_001.fastq.gz 3377969387 FASTQ R2_L004 unaligned CPTAC3 a1647619-4448-4ea8-aa7e-6968fd2f61ad 33b752dd8aee17f45a4d3d22681e88ba { 'aliquot_tag': 'ALQ_93075334', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-00001.RNA-Seq.R2_L006.T C3L-00001 LUAD RNA-Seq tumor CPT0001580164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L006_R2_001.fastq.gz 3786676689 FASTQ R2_L006 unaligned CPTAC3 593e3888-d805-403e-813d-c10c9a34d539 015da0c7e5c477ca695055587c288e62 { 'aliquot_tag': 'ALQ_8ef887a3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-00001.RNA-Seq.transcriptome.A.hg38 C3L-00001 LUAD RNA-Seq tissue_normal CPT0001590005 a2e1d7d9-0770-4526-90ad-e7e604591758.rna_seq.transcriptome.gdc_realn.bam 7891830831 BAM transcriptome harmonized CPTAC3 2253f085-844e-4512-ad3a-190f020bb6fd 9c12d7b15f0fa790224238a87cafba24 { 'aliquot_tag': 'ALQ_93075334', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00001.RNA-Seq.transcriptome.T.hg38 C3L-00001 LUAD RNA-Seq tumor CPT0001580164 11b92d63-a1ae-41b3-b4d2-e5fade78d5e7.rna_seq.transcriptome.gdc_realn.bam 8019945759 BAM transcriptome harmonized CPTAC3 28435e4b-f1a9-4668-ad9d-48247105f822 0adcce03060eadacfe861cf76a348a81 { 'aliquot_tag': 'ALQ_8ef887a3', 'gdc_sample_type': 'Primary Tumor' } C3L-00001.WGS.A C3L-00001 LUAD WGS tissue_normal CPT0001590008 CPT0001590008.WholeGenome.RP-1303.bam 59764413161 BAM aligned CPTAC3 34d01163-72b1-4008-8bd7-33380906edff a66d553a599cd431ec3b6108fd4d8464 { 'aliquot_tag': 'ALQ_edb62f89', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -548,12 +941,12 @@ C3L-00004.miRNA-Seq.T C3L-00004 CCRCC miRNA-Seq tumor CPT0001540164 181113_UNC31 C3L-00004.miRNA-Seq.T.hg38 C3L-00004 CCRCC miRNA-Seq tumor CPT0001540164 02fc9aea-63e7-4918-b494-82ab3ac41599_mirnaseq_gdc_realn.bam 196798551 BAM harmonized CPTAC3 f4df9261-f178-417c-a95c-b08ed5d5d965 a476b35219ca786fe90d17ad67fa407d { 'aliquot_tag': 'ALQ_4b086aa2', 'gdc_sample_type': 'Primary Tumor' } C3L-00004.RNA-Seq.chimeric.A.hg38 C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 5a649b06-079e-4810-b5fb-0abf87d99a6f.rna_seq.chimeric.gdc_realn.bam 68660391 BAM chimeric harmonized CPTAC3 01b90b29-15d2-482d-8a27-fc3f70432df6 b28a1f8ea44450b0c72fe1f24a357d48 { 'aliquot_tag': 'ALQ_cffeef8f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00004.RNA-Seq.chimeric.T.hg38 C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 34226159-5237-455f-ac9b-2713eba4d87e.rna_seq.chimeric.gdc_realn.bam 91352854 BAM chimeric harmonized CPTAC3 7154c769-3d34-42b8-857b-5d14bd8ea2b2 e5801a02e63c454e88fd4362dde092df { 'aliquot_tag': 'ALQ_4b086aa2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00004.RNA-Seq.genomic.A.hg38 C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 5a649b06-079e-4810-b5fb-0abf87d99a6f.rna_seq.genomic.gdc_realn.bam 8198531197 BAM genomic harmonized CPTAC3 3b22ad04-0963-42ad-8891-0e3195cf9d54 4ed88ed7191ba9f8e14c801c71904ec2 { 'aliquot_tag': 'ALQ_cffeef8f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00004.RNA-Seq.genomic.T.hg38 C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 34226159-5237-455f-ac9b-2713eba4d87e.rna_seq.genomic.gdc_realn.bam 8003736717 BAM genomic harmonized CPTAC3 1636dc4f-838a-4f01-a3ff-b7bebfd3c0bf b58b740e672ce92e0e26896ed02d3944 { 'aliquot_tag': 'ALQ_4b086aa2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00004.RNA-Seq.R1_L004.T C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 170802_UNC31-K00269_0072_AHK3GVBBXX_GATCAG_S14_L004_R1_001.fastq.gz 3583768830 FASTQ R1_L004 unaligned CPTAC3 287dfdf2-9db1-4216-bffb-1b0a91d91a18 938ee1cce13b5fb162d745e2728b4a76 { 'aliquot_tag': 'ALQ_4b086aa2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00004.RNA-Seq.R1_L008.A C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 171208_UNC32-K00270_0071_BHN7K5BBXX_GAGTGG_S57_L008_R1_001.fastq.gz 3956827023 FASTQ R1_L008 unaligned CPTAC3 804bc1fd-f191-4415-985f-7572e367ccbb b645b63047f98ea399ccc89e945ffdb4 { 'aliquot_tag': 'ALQ_cffeef8f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00004.RNA-Seq.R2_L004.T C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 170802_UNC31-K00269_0072_AHK3GVBBXX_GATCAG_S14_L004_R2_001.fastq.gz 4011873670 FASTQ R2_L004 unaligned CPTAC3 b9e72d51-f52d-43b0-99fa-25c184f27a92 82f5aca80e5debf65d53c3ff985cfa2b { 'aliquot_tag': 'ALQ_4b086aa2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00004.RNA-Seq.R2_L008.A C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 171208_UNC32-K00270_0071_BHN7K5BBXX_GAGTGG_S57_L008_R2_001.fastq.gz 4122366105 FASTQ R2_L008 unaligned CPTAC3 eb0369b6-5af2-4066-a2b3-41f4d4a93719 4c3078869f5081425ce645dc23dcaeea { 'aliquot_tag': 'ALQ_cffeef8f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00004.RNA-Seq.genomic.A.hg38 C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 5a649b06-079e-4810-b5fb-0abf87d99a6f.rna_seq.genomic.gdc_realn.bam 8198531197 BAM genomic harmonized CPTAC3 6a829605-540c-4742-a7a5-b270dc137c45 4ed88ed7191ba9f8e14c801c71904ec2 { 'aliquot_tag': 'ALQ_cffeef8f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00004.RNA-Seq.genomic.T.hg38 C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 34226159-5237-455f-ac9b-2713eba4d87e.rna_seq.genomic.gdc_realn.bam 8003736717 BAM genomic harmonized CPTAC3 d4c152be-e48a-40b9-8b2d-afc1f4e7ca6d b58b740e672ce92e0e26896ed02d3944 { 'aliquot_tag': 'ALQ_4b086aa2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00004.RNA-Seq.R1_L004.T C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 170802_UNC31-K00269_0072_AHK3GVBBXX_GATCAG_S14_L004_R1_001.fastq.gz 3583768830 FASTQ R1_L004 unaligned CPTAC3 287dfdf2-9db1-4216-bffb-1b0a91d91a18 938ee1cce13b5fb162d745e2728b4a76 { 'aliquot_tag': 'ALQ_4b086aa2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00004.RNA-Seq.R1_L008.A C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 171208_UNC32-K00270_0071_BHN7K5BBXX_GAGTGG_S57_L008_R1_001.fastq.gz 3956827023 FASTQ R1_L008 unaligned CPTAC3 804bc1fd-f191-4415-985f-7572e367ccbb b645b63047f98ea399ccc89e945ffdb4 { 'aliquot_tag': 'ALQ_cffeef8f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00004.RNA-Seq.R2_L004.T C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 170802_UNC31-K00269_0072_AHK3GVBBXX_GATCAG_S14_L004_R2_001.fastq.gz 4011873670 FASTQ R2_L004 unaligned CPTAC3 b9e72d51-f52d-43b0-99fa-25c184f27a92 82f5aca80e5debf65d53c3ff985cfa2b { 'aliquot_tag': 'ALQ_4b086aa2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00004.RNA-Seq.R2_L008.A C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 171208_UNC32-K00270_0071_BHN7K5BBXX_GAGTGG_S57_L008_R2_001.fastq.gz 4122366105 FASTQ R2_L008 unaligned CPTAC3 eb0369b6-5af2-4066-a2b3-41f4d4a93719 4c3078869f5081425ce645dc23dcaeea { 'aliquot_tag': 'ALQ_cffeef8f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00004.RNA-Seq.transcriptome.A.hg38 C3L-00004 CCRCC RNA-Seq tissue_normal CPT0001550006 5a649b06-079e-4810-b5fb-0abf87d99a6f.rna_seq.transcriptome.gdc_realn.bam 10571004205 BAM transcriptome harmonized CPTAC3 edd40709-83f2-40ff-a8d5-d5731f062785 97123e89ecc8f647e09f9da38a31af53 { 'aliquot_tag': 'ALQ_cffeef8f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00004.RNA-Seq.transcriptome.T.hg38 C3L-00004 CCRCC RNA-Seq tumor CPT0001540164 34226159-5237-455f-ac9b-2713eba4d87e.rna_seq.transcriptome.gdc_realn.bam 10413867184 BAM transcriptome harmonized CPTAC3 7057ea6a-7aa4-4472-baad-215642ad7fc1 1bfcab8bb976d6aac1ca0df1a35dc7b2 { 'aliquot_tag': 'ALQ_4b086aa2', 'gdc_sample_type': 'Primary Tumor' } C3L-00004.WGS.A C3L-00004 CCRCC WGS tissue_normal CPT0001550009 CPT0001550009.WholeGenome.RP-1303.bam 63270315022 BAM aligned CPTAC3 376bb37b-520f-4ac4-a035-1fdeb489fc4e ed48599f4986741b3bd1d47a7f003860 { 'aliquot_tag': 'ALQ_5f41f21e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -576,16 +969,19 @@ C3L-00006.miRNA-Seq.T C3L-00006 UCEC miRNA-Seq tumor CPT0001460164 181113_UNC31- C3L-00006.miRNA-Seq.T.hg38 C3L-00006 UCEC miRNA-Seq tumor CPT0001460164 fe67dd2b-fd0a-4918-b7f3-ebf2f10f6063_mirnaseq_gdc_realn.bam 202747726 BAM harmonized CPTAC3 67c467d3-fe50-4e94-aa91-4b4439224362 5d0c0966bb46ffa66b03aaf6e5730dbb { 'aliquot_tag': 'ALQ_fa94ea67', 'gdc_sample_type': 'Primary Tumor' } C3L-00006.RNA-Seq.chimeric.A.hg38 C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 bcf0210d-fc43-42f3-89b4-36dd533fd719.rna_seq.chimeric.gdc_realn.bam 152631450 BAM chimeric harmonized CPTAC3 8c2f844a-76b3-4905-becd-e89798735152 d94abf26d37b1347a7268509f8a65fc2 { 'aliquot_tag': 'ALQ_7e626f4a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00006.RNA-Seq.chimeric.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0001460164 457d1cb9-9e01-4fdf-9768-1450902335b5.rna_seq.chimeric.gdc_realn.bam 131557006 BAM chimeric harmonized CPTAC3 6f0b7990-0d6b-4e71-b033-51c7ae0e222c 8fbfb865f508c1a950cae4c95f02e799 { 'aliquot_tag': 'ALQ_fa94ea67', 'gdc_sample_type': 'Primary Tumor' } -C3L-00006.RNA-Seq.genomic.A.hg38 C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 bcf0210d-fc43-42f3-89b4-36dd533fd719.rna_seq.genomic.gdc_realn.bam 7664521391 BAM genomic harmonized CPTAC3 0192bd52-2e5a-4c05-b241-0cda52f1210d 16f7371ba893134ffa891c5f47a7f1cf { 'aliquot_tag': 'ALQ_7e626f4a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00006.RNA-Seq.chimeric.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0349370001 dba03287-2a39-4e10-afc0-4ac466c38bba.rna_seq.chimeric.gdc_realn.bam 166551731 BAM chimeric harmonized CPTAC3 2da30e2a-eb43-4dfd-9e10-98100fcdc954 37522f6bccf6cd159e45a8b9928516d9 { 'aliquot_tag': 'ALQ_732bb609', 'gdc_sample_type': 'Primary Tumor' } +C3L-00006.RNA-Seq.genomic.A.hg38 C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 bcf0210d-fc43-42f3-89b4-36dd533fd719.rna_seq.genomic.gdc_realn.bam 7664521391 BAM genomic harmonized CPTAC3 a60f01e3-f87e-4fb1-af2d-be6f707a1583 16f7371ba893134ffa891c5f47a7f1cf { 'aliquot_tag': 'ALQ_7e626f4a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00006.RNA-Seq.genomic.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0001460164 457d1cb9-9e01-4fdf-9768-1450902335b5.rna_seq.genomic.gdc_realn.bam 7863180104 BAM genomic harmonized CPTAC3 32b121fd-d4b3-4a4d-85c8-8070f950314d e42687975b40fee286dc7666de7734f6 { 'aliquot_tag': 'ALQ_fa94ea67', 'gdc_sample_type': 'Primary Tumor' } -C3L-00006.RNA-Seq.R1_L005.T C3L-00006 UCEC RNA-Seq tumor CPT0001460164 170802_UNC31-K00269_0072_AHK3GVBBXX_TAGCTT_S17_L005_R1_001.fastq.gz 3875867464 FASTQ R1_L005 unaligned CPTAC3 8a1efc47-1c29-417f-a425-cdbd09565dcb 220251611f5168663d5273deffa65203 { 'aliquot_tag': 'ALQ_fa94ea67', 'gdc_sample_type': 'Primary Tumor' } -C3L-00006.RNA-Seq.R1_L007.A C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 180313_UNC32-K00270_0085_BHT2MGBBXX_CCGTCC_S39_L007_R1_001.fastq.gz 3462455668 FASTQ R1_L007 unaligned CPTAC3 caea5e0c-f3be-4db4-8837-c3f5d89ac4a6 550f9dad913fb3cd970519800eb930d0 { 'aliquot_tag': 'ALQ_7e626f4a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00006.RNA-Seq.R1_.T C3L-00006 UCEC RNA-Seq tumor CPT0349370001 20210714_P1_F5_WB7988_plate1_S65_R1_001.fastq.gz 5552900008 FASTQ R1_ unaligned CPTAC3 cdee2b7c-feac-42d4-9138-3f79952769ea 6233ac946dc6a8cb34fb65b817f41489 { 'aliquot_tag': 'ALQ_732bb609', 'gdc_sample_type': 'Primary Tumor' } -C3L-00006.RNA-Seq.R2_L005.T C3L-00006 UCEC RNA-Seq tumor CPT0001460164 170802_UNC31-K00269_0072_AHK3GVBBXX_TAGCTT_S17_L005_R2_001.fastq.gz 4295485553 FASTQ R2_L005 unaligned CPTAC3 8c3fe9b7-7acd-4867-8d9c-a8e5d1516eda e651d3e28763687d67f1427d288681d1 { 'aliquot_tag': 'ALQ_fa94ea67', 'gdc_sample_type': 'Primary Tumor' } -C3L-00006.RNA-Seq.R2_L007.A C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 180313_UNC32-K00270_0085_BHT2MGBBXX_CCGTCC_S39_L007_R2_001.fastq.gz 3728425524 FASTQ R2_L007 unaligned CPTAC3 d5b2b761-e82a-4829-8aab-a78d87cde2a1 c1a3c67d59e19c0875b3d75400dd8b61 { 'aliquot_tag': 'ALQ_7e626f4a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00006.RNA-Seq.R2_.T C3L-00006 UCEC RNA-Seq tumor CPT0349370001 20210714_P1_F5_WB7988_plate1_S65_R2_001.fastq.gz 5759284017 FASTQ R2_ unaligned CPTAC3 66f24dcc-d4fc-482a-bef2-8252fc3537ca a6520e0879b241ef6e06f85b52cfba52 { 'aliquot_tag': 'ALQ_732bb609', 'gdc_sample_type': 'Primary Tumor' } +C3L-00006.RNA-Seq.genomic.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0349370001 dba03287-2a39-4e10-afc0-4ac466c38bba.rna_seq.genomic.gdc_realn.bam 8961910969 BAM genomic harmonized CPTAC3 0c60f4e6-2c87-4578-b073-886f8e7d6f28 26059fbea54352c8affe719d06b9f843 { 'aliquot_tag': 'ALQ_732bb609', 'gdc_sample_type': 'Primary Tumor' } +C3L-00006.RNA-Seq.R1_L005.T C3L-00006 UCEC RNA-Seq tumor CPT0001460164 170802_UNC31-K00269_0072_AHK3GVBBXX_TAGCTT_S17_L005_R1_001.fastq.gz 3875867464 FASTQ R1_L005 unaligned CPTAC3 8a1efc47-1c29-417f-a425-cdbd09565dcb 220251611f5168663d5273deffa65203 { 'aliquot_tag': 'ALQ_fa94ea67', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00006.RNA-Seq.R1_L007.A C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 180313_UNC32-K00270_0085_BHT2MGBBXX_CCGTCC_S39_L007_R1_001.fastq.gz 3462455668 FASTQ R1_L007 unaligned CPTAC3 caea5e0c-f3be-4db4-8837-c3f5d89ac4a6 550f9dad913fb3cd970519800eb930d0 { 'aliquot_tag': 'ALQ_7e626f4a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00006.RNA-Seq.R2_L005.T C3L-00006 UCEC RNA-Seq tumor CPT0001460164 170802_UNC31-K00269_0072_AHK3GVBBXX_TAGCTT_S17_L005_R2_001.fastq.gz 4295485553 FASTQ R2_L005 unaligned CPTAC3 8c3fe9b7-7acd-4867-8d9c-a8e5d1516eda e651d3e28763687d67f1427d288681d1 { 'aliquot_tag': 'ALQ_fa94ea67', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-00006.RNA-Seq.R2_L007.A C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 180313_UNC32-K00270_0085_BHT2MGBBXX_CCGTCC_S39_L007_R2_001.fastq.gz 3728425524 FASTQ R2_L007 unaligned CPTAC3 d5b2b761-e82a-4829-8aab-a78d87cde2a1 c1a3c67d59e19c0875b3d75400dd8b61 { 'aliquot_tag': 'ALQ_7e626f4a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-00006.RNA-Seq.T C3L-00006 UCEC RNA-Seq tumor CPT0349370001 20210714_P1_F5_WB7988_plate1_S65_R1_001.fastq.gz 5552900008 FASTQ unaligned CPTAC3 cdee2b7c-feac-42d4-9138-3f79952769ea 6233ac946dc6a8cb34fb65b817f41489 +C3L-00006.RNA-Seq.T C3L-00006 UCEC RNA-Seq tumor CPT0349370001 20210714_P1_F5_WB7988_plate1_S65_R2_001.fastq.gz 5759284017 FASTQ unaligned CPTAC3 66f24dcc-d4fc-482a-bef2-8252fc3537ca a6520e0879b241ef6e06f85b52cfba52 C3L-00006.RNA-Seq.transcriptome.A.hg38 C3L-00006 UCEC RNA-Seq tissue_normal CPT0001470006 bcf0210d-fc43-42f3-89b4-36dd533fd719.rna_seq.transcriptome.gdc_realn.bam 8054263551 BAM transcriptome harmonized CPTAC3 1bf96578-4352-48ca-b131-c77f4095744a 988984a1394d31e9fe747e30884d84d3 { 'aliquot_tag': 'ALQ_7e626f4a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00006.RNA-Seq.transcriptome.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0001460164 457d1cb9-9e01-4fdf-9768-1450902335b5.rna_seq.transcriptome.gdc_realn.bam 11243039828 BAM transcriptome harmonized CPTAC3 a522211c-1a38-477a-a725-e6b1bfa39e9f cef80bad497b0393e7b05e8fb6429f8a { 'aliquot_tag': 'ALQ_fa94ea67', 'gdc_sample_type': 'Primary Tumor' } +C3L-00006.RNA-Seq.transcriptome.T.hg38 C3L-00006 UCEC RNA-Seq tumor CPT0349370001 dba03287-2a39-4e10-afc0-4ac466c38bba.rna_seq.transcriptome.gdc_realn.bam 5602032600 BAM transcriptome harmonized CPTAC3 239b6173-9be4-4d4a-aaa7-f61d4b25759e 714c6523c1a163b9a20d149226532f79 { 'aliquot_tag': 'ALQ_732bb609', 'gdc_sample_type': 'Primary Tumor' } C3L-00006.WGS.A C3L-00006 UCEC WGS tissue_normal CPT0001470009 CPT0001470009.WholeGenome.RP-1303.bam 60673545385 BAM aligned CPTAC3 79bc45b0-4936-49db-b54d-462280db83e2 9d2bb378f89f0d21859762f7d6f8fb16 { 'aliquot_tag': 'ALQ_eedd72db', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00006.WGS.A.hg38 C3L-00006 UCEC WGS tissue_normal CPT0001470009 cb385c27-1157-4877-b1ff-a06076715303_wgs_gdc_realn.bam 88996659007 BAM harmonized CPTAC3 8c74f9dc-e295-4db2-bc29-c25e896d7947 4bf38f3505d1860bdd14a20ad4baadef { 'aliquot_tag': 'ALQ_eedd72db', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00006.WGS.N C3L-00006 UCEC WGS blood_normal CPT0000120163 CPT0000120163.WholeGenome.RP-1303.bam 151985198519 BAM aligned CPTAC3 14c0cb14-71e4-4f26-89f1-349ce26f0bf9 fe6d49f2c01725954df1fe15016c214a { 'aliquot_tag': 'ALQ_67ca4303', 'gdc_sample_type': 'Blood Derived Normal' } @@ -603,9 +999,9 @@ C3L-00008.MethArray.Red.T C3L-00008 UCEC Methylation Array tumor CPT0001300005 2 C3L-00008.miRNA-Seq.T C3L-00008 UCEC miRNA-Seq tumor CPT0001300164 181113_UNC31-K00269_0164_AH23NNBBXY_CACGAT_S7_L001_R1_001.unaln.bam 229697943 BAM unaligned CPTAC3 6cbb3340-95dc-4d9d-8fd1-275534f4750f 454ede5d467756fb7508e10f3550ef8d { 'aliquot_tag': 'ALQ_68d12f7f', 'gdc_sample_type': 'Primary Tumor' } C3L-00008.miRNA-Seq.T.hg38 C3L-00008 UCEC miRNA-Seq tumor CPT0001300164 5ae6dc75-0ab0-4f22-bfde-8bdfcd09fe6c_mirnaseq_gdc_realn.bam 252462534 BAM harmonized CPTAC3 07c7f8c4-85be-4fde-b51b-5dea44a9204a 7fe1ec4b4e079f99fb0fdf50ea64d0da { 'aliquot_tag': 'ALQ_68d12f7f', 'gdc_sample_type': 'Primary Tumor' } C3L-00008.RNA-Seq.chimeric.T.hg38 C3L-00008 UCEC RNA-Seq tumor CPT0001300164 fa84f7da-7937-49c1-aa80-0bd186964e8b.rna_seq.chimeric.gdc_realn.bam 91709053 BAM chimeric harmonized CPTAC3 1cfa6fb9-2c16-4cbb-8876-d4b3c383d4d1 b3bbaf1f96c1a955632bbc86853eedf6 { 'aliquot_tag': 'ALQ_68d12f7f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00008.RNA-Seq.genomic.T.hg38 C3L-00008 UCEC RNA-Seq tumor CPT0001300164 fa84f7da-7937-49c1-aa80-0bd186964e8b.rna_seq.genomic.gdc_realn.bam 8027989531 BAM genomic harmonized CPTAC3 1e3f3bd2-e0af-43ff-9bef-ec69f7738fd8 b667aaf9b59d2f5eeb2782f11d07f98f { 'aliquot_tag': 'ALQ_68d12f7f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00008.RNA-Seq.R1_L007.T C3L-00008 UCEC RNA-Seq tumor CPT0001300164 170802_UNC31-K00269_0072_AHK3GVBBXX_GGCTAC_S22_L007_R1_001.fastq.gz 3737217002 FASTQ R1_L007 unaligned CPTAC3 555725e8-cba5-4676-9b0a-80100cbf9f47 05fe45687d115a7f053b31ece92174db { 'aliquot_tag': 'ALQ_68d12f7f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00008.RNA-Seq.R2_L007.T C3L-00008 UCEC RNA-Seq tumor CPT0001300164 170802_UNC31-K00269_0072_AHK3GVBBXX_GGCTAC_S22_L007_R2_001.fastq.gz 4246440834 FASTQ R2_L007 unaligned CPTAC3 15235b12-b67a-4678-acc4-ed03d642bd5e c582fc995be2c3e9b3b93c65b025e917 { 'aliquot_tag': 'ALQ_68d12f7f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00008.RNA-Seq.genomic.T.hg38 C3L-00008 UCEC RNA-Seq tumor CPT0001300164 fa84f7da-7937-49c1-aa80-0bd186964e8b.rna_seq.genomic.gdc_realn.bam 8027989531 BAM genomic harmonized CPTAC3 00f51241-f59f-471f-a3e9-a833ec21ecd6 b667aaf9b59d2f5eeb2782f11d07f98f { 'aliquot_tag': 'ALQ_68d12f7f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00008.RNA-Seq.R1_L007.T C3L-00008 UCEC RNA-Seq tumor CPT0001300164 170802_UNC31-K00269_0072_AHK3GVBBXX_GGCTAC_S22_L007_R1_001.fastq.gz 3737217002 FASTQ R1_L007 unaligned CPTAC3 555725e8-cba5-4676-9b0a-80100cbf9f47 05fe45687d115a7f053b31ece92174db { 'aliquot_tag': 'ALQ_68d12f7f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00008.RNA-Seq.R2_L007.T C3L-00008 UCEC RNA-Seq tumor CPT0001300164 170802_UNC31-K00269_0072_AHK3GVBBXX_GGCTAC_S22_L007_R2_001.fastq.gz 4246440834 FASTQ R2_L007 unaligned CPTAC3 15235b12-b67a-4678-acc4-ed03d642bd5e c582fc995be2c3e9b3b93c65b025e917 { 'aliquot_tag': 'ALQ_68d12f7f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-00008.RNA-Seq.transcriptome.T.hg38 C3L-00008 UCEC RNA-Seq tumor CPT0001300164 fa84f7da-7937-49c1-aa80-0bd186964e8b.rna_seq.transcriptome.gdc_realn.bam 12876827464 BAM transcriptome harmonized CPTAC3 b385f3d1-700b-4f49-887f-79f651fc3662 8a2e755af8a7d0f99a7c35ac910e4c56 { 'aliquot_tag': 'ALQ_68d12f7f', 'gdc_sample_type': 'Primary Tumor' } C3L-00008.WGS.N C3L-00008 UCEC WGS blood_normal CPT0000080163 CPT0000080163.WholeGenome.RP-1303.bam 140546547792 BAM aligned CPTAC3 65f1564f-5dd7-4fc5-ae7c-8522602435d9 c71568df169ce9daf86c6f148bfc9352 { 'aliquot_tag': 'ALQ_e6268807', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00008.WGS.N.hg38 C3L-00008 UCEC WGS blood_normal CPT0000080163 243bfb3c-d06b-4de5-a6c3-7fa7e2c5fb74_gdc_realn.bam 204714582211 BAM harmonized CPTAC3 846bf455-89b4-4840-b113-e529ffa13277 1df7341fbedeaec7cfd70438deb6107f { 'aliquot_tag': 'ALQ_e6268807', 'gdc_sample_type': 'Blood Derived Normal' } @@ -625,12 +1021,12 @@ C3L-00009.miRNA-Seq.T C3L-00009 LUAD miRNA-Seq tumor CPT0001380164 181113_UNC31- C3L-00009.miRNA-Seq.T.hg38 C3L-00009 LUAD miRNA-Seq tumor CPT0001380164 296a7602-6d26-4bde-80aa-b3d2002dfe9b_mirnaseq_gdc_realn.bam 231050217 BAM harmonized CPTAC3 fc1d256a-776e-4b68-b8ad-92e9e7d73a68 c33a273b62862dcfd24370858a1c7161 { 'aliquot_tag': 'ALQ_58a164be', 'gdc_sample_type': 'Primary Tumor' } C3L-00009.RNA-Seq.chimeric.A.hg38 C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 045a0c44-f401-4e16-bbfb-27583dcd8d1e.rna_seq.chimeric.gdc_realn.bam 123702031 BAM chimeric harmonized CPTAC3 6ac290fa-5404-4c83-bfff-7c3509af9d60 7306acabc5d8a8019615e2c6e7c352d3 { 'aliquot_tag': 'ALQ_b526245d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00009.RNA-Seq.chimeric.T.hg38 C3L-00009 LUAD RNA-Seq tumor CPT0001380164 ec7bea27-8f74-48cd-903b-6ec3c071eb6c.rna_seq.chimeric.gdc_realn.bam 76255951 BAM chimeric harmonized CPTAC3 7e933af3-e1c7-4825-bcba-9826a3124890 28dacd861e41352938a1fd3cc8a57478 { 'aliquot_tag': 'ALQ_58a164be', 'gdc_sample_type': 'Primary Tumor' } -C3L-00009.RNA-Seq.genomic.A.hg38 C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 045a0c44-f401-4e16-bbfb-27583dcd8d1e.rna_seq.genomic.gdc_realn.bam 9297385735 BAM genomic harmonized CPTAC3 c331e615-eba3-4e5a-91f0-1a086880c009 88d2f7b9ab6bcdd4e4ef45f1408ccd34 { 'aliquot_tag': 'ALQ_b526245d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00009.RNA-Seq.genomic.T.hg38 C3L-00009 LUAD RNA-Seq tumor CPT0001380164 ec7bea27-8f74-48cd-903b-6ec3c071eb6c.rna_seq.genomic.gdc_realn.bam 8563651123 BAM genomic harmonized CPTAC3 a6abe80e-33ea-4a4b-97e1-e6b9719bf003 22209ed390b94e16d24eb557c5111f59 { 'aliquot_tag': 'ALQ_58a164be', 'gdc_sample_type': 'Primary Tumor' } -C3L-00009.RNA-Seq.R1_L003.A C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L003_R1_001.fastq.gz 4585414783 FASTQ R1_L003 unaligned CPTAC3 efaa698c-4015-4478-80ae-f13272b9adc7 583dfe6563a36065ef2bfc386888e974 { 'aliquot_tag': 'ALQ_b526245d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00009.RNA-Seq.R1_L007.T C3L-00009 LUAD RNA-Seq tumor CPT0001380164 170802_UNC31-K00269_0072_AHK3GVBBXX_CTTGTA_S23_L007_R1_001.fastq.gz 4042964948 FASTQ R1_L007 unaligned CPTAC3 3b80e84e-5031-4d2c-b05d-d4cbb0559a37 4c44c82a1ec01a0ca194e9ab54bcafa1 { 'aliquot_tag': 'ALQ_58a164be', 'gdc_sample_type': 'Primary Tumor' } -C3L-00009.RNA-Seq.R2_L003.A C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L003_R2_001.fastq.gz 4422468276 FASTQ R2_L003 unaligned CPTAC3 cb333933-3aec-4350-b5ea-ec92a896c339 95ed5fb2995fefbc7e0b69a6b25525d4 { 'aliquot_tag': 'ALQ_b526245d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00009.RNA-Seq.R2_L007.T C3L-00009 LUAD RNA-Seq tumor CPT0001380164 170802_UNC31-K00269_0072_AHK3GVBBXX_CTTGTA_S23_L007_R2_001.fastq.gz 4378806570 FASTQ R2_L007 unaligned CPTAC3 5b06320e-6066-4ff2-a03f-dc2382327b61 187d9e60c600625f71f07790835a211d { 'aliquot_tag': 'ALQ_58a164be', 'gdc_sample_type': 'Primary Tumor' } +C3L-00009.RNA-Seq.genomic.A.hg38 C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 045a0c44-f401-4e16-bbfb-27583dcd8d1e.rna_seq.genomic.gdc_realn.bam 9297385735 BAM genomic harmonized CPTAC3 0960ebb9-18b2-4a68-9690-cc60abb4cc9c 88d2f7b9ab6bcdd4e4ef45f1408ccd34 { 'aliquot_tag': 'ALQ_b526245d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00009.RNA-Seq.genomic.T.hg38 C3L-00009 LUAD RNA-Seq tumor CPT0001380164 ec7bea27-8f74-48cd-903b-6ec3c071eb6c.rna_seq.genomic.gdc_realn.bam 8563651123 BAM genomic harmonized CPTAC3 50fd5e8a-0e34-483d-9596-34ce0b2467e9 22209ed390b94e16d24eb557c5111f59 { 'aliquot_tag': 'ALQ_58a164be', 'gdc_sample_type': 'Primary Tumor' } +C3L-00009.RNA-Seq.R1_L003.A C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L003_R1_001.fastq.gz 4585414783 FASTQ R1_L003 unaligned CPTAC3 efaa698c-4015-4478-80ae-f13272b9adc7 583dfe6563a36065ef2bfc386888e974 { 'aliquot_tag': 'ALQ_b526245d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-00009.RNA-Seq.R1_L007.T C3L-00009 LUAD RNA-Seq tumor CPT0001380164 170802_UNC31-K00269_0072_AHK3GVBBXX_CTTGTA_S23_L007_R1_001.fastq.gz 4042964948 FASTQ R1_L007 unaligned CPTAC3 3b80e84e-5031-4d2c-b05d-d4cbb0559a37 4c44c82a1ec01a0ca194e9ab54bcafa1 { 'aliquot_tag': 'ALQ_58a164be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00009.RNA-Seq.R2_L003.A C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L003_R2_001.fastq.gz 4422468276 FASTQ R2_L003 unaligned CPTAC3 cb333933-3aec-4350-b5ea-ec92a896c339 95ed5fb2995fefbc7e0b69a6b25525d4 { 'aliquot_tag': 'ALQ_b526245d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-00009.RNA-Seq.R2_L007.T C3L-00009 LUAD RNA-Seq tumor CPT0001380164 170802_UNC31-K00269_0072_AHK3GVBBXX_CTTGTA_S23_L007_R2_001.fastq.gz 4378806570 FASTQ R2_L007 unaligned CPTAC3 5b06320e-6066-4ff2-a03f-dc2382327b61 187d9e60c600625f71f07790835a211d { 'aliquot_tag': 'ALQ_58a164be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-00009.RNA-Seq.transcriptome.A.hg38 C3L-00009 LUAD RNA-Seq tissue_normal CPT0001390013 045a0c44-f401-4e16-bbfb-27583dcd8d1e.rna_seq.transcriptome.gdc_realn.bam 10819981592 BAM transcriptome harmonized CPTAC3 8279d729-f50f-4ea4-84c5-880791ad2df0 b89b349c175fe91ca59cc1d74164d2ef { 'aliquot_tag': 'ALQ_b526245d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00009.RNA-Seq.transcriptome.T.hg38 C3L-00009 LUAD RNA-Seq tumor CPT0001380164 ec7bea27-8f74-48cd-903b-6ec3c071eb6c.rna_seq.transcriptome.gdc_realn.bam 11450323150 BAM transcriptome harmonized CPTAC3 4acbd5af-996f-4803-ad69-a408baae5a74 6b1fe457f98fb844e93d6e1cfa0222eb { 'aliquot_tag': 'ALQ_58a164be', 'gdc_sample_type': 'Primary Tumor' } C3L-00009.WGS.A C3L-00009 LUAD WGS tissue_normal CPT0001390009 CPT0001390009.WholeGenome.RP-1303.bam 61674000927 BAM aligned CPTAC3 920307a7-8475-4380-98e6-5418204783b7 56dc82e1b85294761b2b6d2281a1aede { 'aliquot_tag': 'ALQ_4ce8fc02', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -657,10 +1053,10 @@ C3L-00010.RNA-Seq.chimeric.A.hg38 C3L-00010 CCRCC RNA-Seq tissue_normal CPT00012 C3L-00010.RNA-Seq.chimeric.T.hg38 C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 d7fa7d14-7477-4229-83da-a6af5c0ba63f.rna_seq.chimeric.gdc_realn.bam 123920973 BAM chimeric harmonized CPTAC3 f94a9111-d42e-47fd-be95-94bce16d4864 65edf98cbfc05cb8efac5e3d9eb113cf { 'aliquot_tag': 'ALQ_d94dafba', 'gdc_sample_type': 'Primary Tumor' } C3L-00010.RNA-Seq.genomic.A.hg38 C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 fa45d98c-d8ef-4382-9e6f-d8225ec37aa5.rna_seq.genomic.gdc_realn.bam 8429928591 BAM genomic harmonized CPTAC3 19c437b4-f1c4-483a-a7f6-d147a72f6b12 48abd0fb2c13728ee7ff05e11debf571 { 'aliquot_tag': 'ALQ_5dbb2a97', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00010.RNA-Seq.genomic.T.hg38 C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 d7fa7d14-7477-4229-83da-a6af5c0ba63f.rna_seq.genomic.gdc_realn.bam 9473523842 BAM genomic harmonized CPTAC3 5a0b3885-1bff-415f-aad8-1741d0d29d44 e9dbea8afe32bff1ea15409c96847821 { 'aliquot_tag': 'ALQ_d94dafba', 'gdc_sample_type': 'Primary Tumor' } -C3L-00010.RNA-Seq.R1_L006.A C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTGGCC_S32_L006_R1_001.fastq.gz 4362594256 FASTQ R1_L006 unaligned CPTAC3 d7dc0a9b-5d44-494e-89b2-0bf8591cef68 717ee4c5c48244b65f2b68bfa9e1b8b1 { 'aliquot_tag': 'ALQ_5dbb2a97', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00010.RNA-Seq.R1_L006.T C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTCAA_S20_L006_R1_001.fastq.gz 4528605062 FASTQ R1_L006 unaligned CPTAC3 15ae9b4c-fdc6-4698-b6cc-36a13a5b418f d72bd8978738fc9b51e9221c119b6073 { 'aliquot_tag': 'ALQ_d94dafba', 'gdc_sample_type': 'Primary Tumor' } -C3L-00010.RNA-Seq.R2_L006.A C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTGGCC_S32_L006_R2_001.fastq.gz 4773363521 FASTQ R2_L006 unaligned CPTAC3 35d3cc70-0727-46c0-8146-3c51ae013279 9c7e511ba27dbd6ba6c25ad4241a1009 { 'aliquot_tag': 'ALQ_5dbb2a97', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00010.RNA-Seq.R2_L006.T C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTCAA_S20_L006_R2_001.fastq.gz 4949848179 FASTQ R2_L006 unaligned CPTAC3 f02d442c-e43b-47a5-aac4-f2e422e24927 e0145074be56a89ad9575d00a012db49 { 'aliquot_tag': 'ALQ_d94dafba', 'gdc_sample_type': 'Primary Tumor' } +C3L-00010.RNA-Seq.R1_L006.A C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTGGCC_S32_L006_R1_001.fastq.gz 4362594256 FASTQ R1_L006 unaligned CPTAC3 d7dc0a9b-5d44-494e-89b2-0bf8591cef68 717ee4c5c48244b65f2b68bfa9e1b8b1 { 'aliquot_tag': 'ALQ_5dbb2a97', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-00010.RNA-Seq.R1_L006.T C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTCAA_S20_L006_R1_001.fastq.gz 4528605062 FASTQ R1_L006 unaligned CPTAC3 15ae9b4c-fdc6-4698-b6cc-36a13a5b418f d72bd8978738fc9b51e9221c119b6073 { 'aliquot_tag': 'ALQ_d94dafba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00010.RNA-Seq.R2_L006.A C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTGGCC_S32_L006_R2_001.fastq.gz 4773363521 FASTQ R2_L006 unaligned CPTAC3 35d3cc70-0727-46c0-8146-3c51ae013279 9c7e511ba27dbd6ba6c25ad4241a1009 { 'aliquot_tag': 'ALQ_5dbb2a97', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-00010.RNA-Seq.R2_L006.T C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTCAA_S20_L006_R2_001.fastq.gz 4949848179 FASTQ R2_L006 unaligned CPTAC3 f02d442c-e43b-47a5-aac4-f2e422e24927 e0145074be56a89ad9575d00a012db49 { 'aliquot_tag': 'ALQ_d94dafba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-00010.RNA-Seq.transcriptome.A.hg38 C3L-00010 CCRCC RNA-Seq tissue_normal CPT0001230006 fa45d98c-d8ef-4382-9e6f-d8225ec37aa5.rna_seq.transcriptome.gdc_realn.bam 11728815747 BAM transcriptome harmonized CPTAC3 30c7bf3a-6965-4f13-85a1-f9aa263a4f31 98eb4b5ce138ede5c975bf52cb5cc8f2 { 'aliquot_tag': 'ALQ_5dbb2a97', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00010.RNA-Seq.transcriptome.T.hg38 C3L-00010 CCRCC RNA-Seq tumor CPT0001220164 d7fa7d14-7477-4229-83da-a6af5c0ba63f.rna_seq.transcriptome.gdc_realn.bam 12871973727 BAM transcriptome harmonized CPTAC3 ebc24c17-4d8c-4057-b632-ce5357e00a43 776450c35940e3b9c335f7ded10c63c5 { 'aliquot_tag': 'ALQ_d94dafba', 'gdc_sample_type': 'Primary Tumor' } C3L-00010.WGS.A C3L-00010 CCRCC WGS tissue_normal CPT0001230009 CPT0001230009.WholeGenome.RP-1303.bam 66170860688 BAM aligned CPTAC3 d6b039cb-4b4a-406d-ab6b-cb1f465c86b0 6c684546dd013110cc3cb459212e9f4b { 'aliquot_tag': 'ALQ_cd043706', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -685,12 +1081,12 @@ C3L-00011.miRNA-Seq.T C3L-00011 CCRCC miRNA-Seq tumor CPT0001340164 181119_UNC31 C3L-00011.miRNA-Seq.T.hg38 C3L-00011 CCRCC miRNA-Seq tumor CPT0001340164 ae175b52-c84d-415a-99c2-c30182ad6c99_mirnaseq_gdc_realn.bam 207460413 BAM harmonized CPTAC3 04d17f0d-2784-49b3-b339-ade6c6ff42f3 b641daf7d3afb6d1b9e00152ee94c766 { 'aliquot_tag': 'ALQ_9d5189bf', 'gdc_sample_type': 'Primary Tumor' } C3L-00011.RNA-Seq.chimeric.A.hg38 C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 e8e82b00-3690-4dbd-a159-a3669f2eebef.rna_seq.chimeric.gdc_realn.bam 93920816 BAM chimeric harmonized CPTAC3 cde8b397-b14d-4551-887c-68ab73529cc8 a8f215fad0e55258fe22fe88fed798c2 { 'aliquot_tag': 'ALQ_19a70c92', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00011.RNA-Seq.chimeric.T.hg38 C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 84c6e8e2-714e-4c11-992d-0e36bb01d83a.rna_seq.chimeric.gdc_realn.bam 76207014 BAM chimeric harmonized CPTAC3 3b99edfd-51f3-4015-9c35-b450b1a5e57c 4213dd6e1fa6419880aef4445ba52026 { 'aliquot_tag': 'ALQ_9d5189bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-00011.RNA-Seq.genomic.A.hg38 C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 e8e82b00-3690-4dbd-a159-a3669f2eebef.rna_seq.genomic.gdc_realn.bam 8481564508 BAM genomic harmonized CPTAC3 a1cbbb99-2448-4fef-894b-ce24ee897d6c aeaab4651a6dab15dc0aa83cafd93a92 { 'aliquot_tag': 'ALQ_19a70c92', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00011.RNA-Seq.genomic.T.hg38 C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 84c6e8e2-714e-4c11-992d-0e36bb01d83a.rna_seq.genomic.gdc_realn.bam 9218028419 BAM genomic harmonized CPTAC3 1f59e790-bf8a-43a6-bf0b-fd84c281510f 26946328f944a5713ef0b0dcd691b08f { 'aliquot_tag': 'ALQ_9d5189bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-00011.RNA-Seq.R1_L002.T C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTTCC_S5_L002_R1_001.fastq.gz 4527861646 FASTQ R1_L002 unaligned CPTAC3 d252be0f-df6b-49c5-899a-ff49ae494734 48d02ecafb894ce49c96a5e6c8e08f90 { 'aliquot_tag': 'ALQ_9d5189bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-00011.RNA-Seq.R1_L008.A C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATTCCT_S59_L008_R1_001.fastq.gz 4229587764 FASTQ R1_L008 unaligned CPTAC3 a75e662a-1759-4c8d-a41a-ee2d0e37156b f88867fb6fe2bd6f526bc85105acd41c { 'aliquot_tag': 'ALQ_19a70c92', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00011.RNA-Seq.R2_L002.T C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTTCC_S5_L002_R2_001.fastq.gz 5020359841 FASTQ R2_L002 unaligned CPTAC3 ec72b0a4-24ba-49e4-9b07-36302c576165 68175725cba52c59195e2bcbbc0803a9 { 'aliquot_tag': 'ALQ_9d5189bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-00011.RNA-Seq.R2_L008.A C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATTCCT_S59_L008_R2_001.fastq.gz 4450162125 FASTQ R2_L008 unaligned CPTAC3 5fb7500f-aafe-4cf3-b932-cbb5894ca6ea 5c7959f56b1e8be2afaaba669c8ceead { 'aliquot_tag': 'ALQ_19a70c92', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00011.RNA-Seq.genomic.A.hg38 C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 e8e82b00-3690-4dbd-a159-a3669f2eebef.rna_seq.genomic.gdc_realn.bam 8481564508 BAM genomic harmonized CPTAC3 28109c75-2874-4466-89b3-01623efb8918 aeaab4651a6dab15dc0aa83cafd93a92 { 'aliquot_tag': 'ALQ_19a70c92', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00011.RNA-Seq.genomic.T.hg38 C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 84c6e8e2-714e-4c11-992d-0e36bb01d83a.rna_seq.genomic.gdc_realn.bam 9218028419 BAM genomic harmonized CPTAC3 d2d422f1-d398-4e60-b572-adfa9bd756e4 26946328f944a5713ef0b0dcd691b08f { 'aliquot_tag': 'ALQ_9d5189bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-00011.RNA-Seq.R1_L002.T C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTTCC_S5_L002_R1_001.fastq.gz 4527861646 FASTQ R1_L002 unaligned CPTAC3 d252be0f-df6b-49c5-899a-ff49ae494734 48d02ecafb894ce49c96a5e6c8e08f90 { 'aliquot_tag': 'ALQ_9d5189bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00011.RNA-Seq.R1_L008.A C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATTCCT_S59_L008_R1_001.fastq.gz 4229587764 FASTQ R1_L008 unaligned CPTAC3 a75e662a-1759-4c8d-a41a-ee2d0e37156b f88867fb6fe2bd6f526bc85105acd41c { 'aliquot_tag': 'ALQ_19a70c92', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00011.RNA-Seq.R2_L002.T C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 170802_UNC31-K00269_0072_AHK3GVBBXX_AGTTCC_S5_L002_R2_001.fastq.gz 5020359841 FASTQ R2_L002 unaligned CPTAC3 ec72b0a4-24ba-49e4-9b07-36302c576165 68175725cba52c59195e2bcbbc0803a9 { 'aliquot_tag': 'ALQ_9d5189bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00011.RNA-Seq.R2_L008.A C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATTCCT_S59_L008_R2_001.fastq.gz 4450162125 FASTQ R2_L008 unaligned CPTAC3 5fb7500f-aafe-4cf3-b932-cbb5894ca6ea 5c7959f56b1e8be2afaaba669c8ceead { 'aliquot_tag': 'ALQ_19a70c92', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00011.RNA-Seq.transcriptome.A.hg38 C3L-00011 CCRCC RNA-Seq tissue_normal CPT0001350006 e8e82b00-3690-4dbd-a159-a3669f2eebef.rna_seq.transcriptome.gdc_realn.bam 10575132510 BAM transcriptome harmonized CPTAC3 1b5715fb-31f3-46c3-82a0-9a3363d1ca33 61835de0c1a85dc320fd7ac9fd7f4f00 { 'aliquot_tag': 'ALQ_19a70c92', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00011.RNA-Seq.transcriptome.T.hg38 C3L-00011 CCRCC RNA-Seq tumor CPT0001340164 84c6e8e2-714e-4c11-992d-0e36bb01d83a.rna_seq.transcriptome.gdc_realn.bam 14532670630 BAM transcriptome harmonized CPTAC3 13b2f844-a209-4255-925b-a3aa2231fb41 22a5be919d155cf915235ab3b60915c1 { 'aliquot_tag': 'ALQ_9d5189bf', 'gdc_sample_type': 'Primary Tumor' } C3L-00011.WGS.A C3L-00011 CCRCC WGS tissue_normal CPT0001350009 CPT0001350009.WholeGenome.RP-1303.bam 63843661770 BAM aligned CPTAC3 e3a74633-2d2a-4ab4-bd6f-9b2ef354fa30 f825d81f1b7a871608c7423b0589a3b3 { 'aliquot_tag': 'ALQ_89181103', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -709,11 +1105,11 @@ C3L-00016.MethArray.Green.T C3L-00016 GBM Methylation Array tumor CPT0000160003 C3L-00016.MethArray.Red.T C3L-00016 GBM Methylation Array tumor CPT0000160003 202176290116_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 13b7fc78-234a-4239-bc28-a890b0753355 f0bbec1282bb8b928cc0f5bd7d9e0e06 { 'aliquot_tag': 'ALQ_c5d22872', 'gdc_sample_type': 'Primary Tumor' } C3L-00016.miRNA-Seq.T C3L-00016 GBM miRNA-Seq tumor CPT0000160009 181012_UNC32-K00270_0124_AH223CBBXY_GATCAG_S30_L002_R1_001.unaln.bam 221975879 BAM unaligned CPTAC3 3e737b61-f962-4802-8a06-c1700f66b349 4239df47e9d0407453b6dd3ac9de124b { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor' } C3L-00016.miRNA-Seq.T.hg38 C3L-00016 GBM miRNA-Seq tumor CPT0000160009 150c39c8-9fc8-4e39-b4cd-60107c069c55_mirnaseq_gdc_realn.bam 244553837 BAM harmonized CPTAC3 cf8be618-3d9e-4f2e-90e6-0acaa0e890e6 b69ed86871405103b680b773ae8d441f { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00016.RNA-Seq.chimeric.T.hg38 C3L-00016 GBM RNA-Seq tumor CPT0000160009 db99b367-2037-4810-8f6a-d0dc3df56838.rna_seq.chimeric.gdc_realn.bam 154882980 BAM chimeric harmonized CPTAC3 59e68d05-cb6e-449e-a97a-20be3b6bfcf2 ee0413ac0be07bd35af14407378e423c { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00016.RNA-Seq.genomic.T.hg38 C3L-00016 GBM RNA-Seq tumor CPT0000160009 db99b367-2037-4810-8f6a-d0dc3df56838.rna_seq.genomic.gdc_realn.bam 7532896114 BAM genomic harmonized CPTAC3 6695623f-881e-4c0b-8f46-adb8c89161c2 b6b11c3f9946bb8f5ce12ba22c44d8af { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00016.RNA-Seq.R1_L004.T C3L-00016 GBM RNA-Seq tumor CPT0000160009 170818_UNC32-K00270_0050_AHL2FHBBXX_TAGCTT_S15_L004_R1_001.fastq.gz 3913028223 FASTQ R1_L004 unaligned CPTAC3 b9a867a6-3d0e-4ae3-9255-b14de2da0bc0 44800753a6eba14930f1948a8dcea606 { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00016.RNA-Seq.R2_L004.T C3L-00016 GBM RNA-Seq tumor CPT0000160009 170818_UNC32-K00270_0050_AHL2FHBBXX_TAGCTT_S15_L004_R2_001.fastq.gz 4252326429 FASTQ R2_L004 unaligned CPTAC3 9be64798-0704-4670-98e6-14d37e34d359 a2b43c4c526080760a2cc05e5f2678f9 { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00016.RNA-Seq.transcriptome.T.hg38 C3L-00016 GBM RNA-Seq tumor CPT0000160009 db99b367-2037-4810-8f6a-d0dc3df56838.rna_seq.transcriptome.gdc_realn.bam 9095166129 BAM transcriptome harmonized CPTAC3 c7ad45ba-8b43-4392-acad-85223bd77261 f6db2e95c6569f752e2cddd7a06360a1 { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00016.RNA-Seq.chimeric.T.hg38 C3L-00016 GBM RNA-Seq tumor CPT0000160009 62e8d8fe-4229-4721-aa04-dc6b8121670b.rna_seq.chimeric.gdc_realn.bam 154831679 BAM chimeric harmonized CPTAC3 5854b169-212c-464a-9e8d-c96a943e5a49 449b12b8fd4ce000d67daa91c94b3323 { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00016.RNA-Seq.genomic.T.hg38 C3L-00016 GBM RNA-Seq tumor CPT0000160009 62e8d8fe-4229-4721-aa04-dc6b8121670b.rna_seq.genomic.gdc_realn.bam 7533971382 BAM genomic harmonized CPTAC3 fc56c01f-4d64-4a0e-81a8-dca8a6f7d9f9 45dd593d543fe3163955a1213057a546 { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00016.RNA-Seq.R1_L004.T C3L-00016 GBM RNA-Seq tumor CPT0000160009 170818_UNC32-K00270_0050_AHL2FHBBXX_TAGCTT_S15_L004_R1_001.fastq.gz 3913028223 FASTQ R1_L004 unaligned CPTAC3 b9a867a6-3d0e-4ae3-9255-b14de2da0bc0 44800753a6eba14930f1948a8dcea606 { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00016.RNA-Seq.R2_L004.T C3L-00016 GBM RNA-Seq tumor CPT0000160009 170818_UNC32-K00270_0050_AHL2FHBBXX_TAGCTT_S15_L004_R2_001.fastq.gz 4252326429 FASTQ R2_L004 unaligned CPTAC3 9be64798-0704-4670-98e6-14d37e34d359 a2b43c4c526080760a2cc05e5f2678f9 { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00016.RNA-Seq.transcriptome.T.hg38 C3L-00016 GBM RNA-Seq tumor CPT0000160009 62e8d8fe-4229-4721-aa04-dc6b8121670b.rna_seq.transcriptome.gdc_realn.bam 10429668835 BAM transcriptome harmonized CPTAC3 bdfd31e2-ee6a-4982-b506-549dcf92d140 76c7251810e4b7caefff5e7f08bf6cd6 { 'aliquot_tag': 'ALQ_2507c16c', 'gdc_sample_type': 'Primary Tumor' } C3L-00016.WGS.N C3L-00016 GBM WGS blood_normal CPT0000560002 CPT0000560002.WholeGenome.RP-1303.bam 65872139991 BAM aligned CPTAC3 a9c08dcc-0df0-459b-a608-308b3c018030 d7afba4b719da09166d891ed997ff477 { 'aliquot_tag': 'ALQ_29445af2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00016.WGS.N.hg38 C3L-00016 GBM WGS blood_normal CPT0000560002 65158bcf-b42e-4e35-aa37-aad195b41e03_gdc_realn.bam 97699854646 BAM harmonized CPTAC3 7afe875f-ea77-47f6-a840-2b6f5ac8d749 00fdebecb8df92150d58c24b8f67925c { 'aliquot_tag': 'ALQ_29445af2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00016.WGS.T C3L-00016 GBM WGS tumor CPT0000160003 CPT0000160003.WholeGenome.RP-1303.bam 59650983098 BAM aligned CPTAC3 3758ca28-0fb7-4970-a11d-c4b98a5a82d6 8986bba774e64dced8c8e87bccadd7db { 'aliquot_tag': 'ALQ_c5d22872', 'gdc_sample_type': 'Primary Tumor' } @@ -732,12 +1128,12 @@ C3L-00017.miRNA-Seq.T C3L-00017 PDA miRNA-Seq tumor CPT0000250008 181012_UNC32-K C3L-00017.miRNA-Seq.T.hg38 C3L-00017 PDA miRNA-Seq tumor CPT0000250008 2ef609a6-cc14-4705-b02a-fb080fb25796_mirnaseq_gdc_realn.bam 342883849 BAM harmonized CPTAC3 bcdb1f0b-bbe9-4606-a0f6-29a116719508 9e7902427780f7dea55569106a11dc70 { 'aliquot_tag': 'ALQ_9334f984', 'gdc_sample_type': 'Primary Tumor' } C3L-00017.RNA-Seq.chimeric.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 b6fa7c32-8223-4504-b2ba-ad9501078c78.rna_seq.chimeric.gdc_realn.bam 139214517 BAM chimeric harmonized CPTAC3 143f0d4b-922f-4765-aa64-bc67a31ab800 8a88b166a19aae523f9ac3fcb2f1f57e { 'aliquot_tag': 'ALQ_e4c87e3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00017.RNA-Seq.chimeric.T.hg38 C3L-00017 PDA RNA-Seq tumor CPT0000250008 7a936c08-37bd-4b05-8c63-f54217a79e1a.rna_seq.chimeric.gdc_realn.bam 142374120 BAM chimeric harmonized CPTAC3 8326ad43-5805-4851-be31-c2861e6c9564 31de717431230667cccfff5136cea035 { 'aliquot_tag': 'ALQ_9334f984', 'gdc_sample_type': 'Primary Tumor' } -C3L-00017.RNA-Seq.genomic.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 b6fa7c32-8223-4504-b2ba-ad9501078c78.rna_seq.genomic.gdc_realn.bam 9982605016 BAM genomic harmonized CPTAC3 c00524fb-6d51-4747-a46c-d111696c442b 986d14f57362a146f385d443ace2db4b { 'aliquot_tag': 'ALQ_e4c87e3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00017.RNA-Seq.genomic.T.hg38 C3L-00017 PDA RNA-Seq tumor CPT0000250008 7a936c08-37bd-4b05-8c63-f54217a79e1a.rna_seq.genomic.gdc_realn.bam 7422416912 BAM genomic harmonized CPTAC3 b8852935-3423-460d-91c9-6e7d1525cf01 6c0c18c9b39ea991cab51953849e8a2c { 'aliquot_tag': 'ALQ_9334f984', 'gdc_sample_type': 'Primary Tumor' } -C3L-00017.RNA-Seq.R1_L004.T C3L-00017 PDA RNA-Seq tumor CPT0000250008 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L004_R1_001.fastq.gz 3555365035 FASTQ R1_L004 unaligned CPTAC3 d2b5f6b3-828b-4320-9e4d-4b2eaa4e7e6f 74d89675af92eec43b7f5347e678c16a { 'aliquot_tag': 'ALQ_9334f984', 'gdc_sample_type': 'Primary Tumor' } -C3L-00017.RNA-Seq.R1_L007.A C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 180508_UNC31-K00269_0127_AHTV7YBBXX_ACTGAT_S59_L007_R1_001.fastq.gz 4470007340 FASTQ R1_L007 unaligned CPTAC3 7829f978-5fd7-436a-9ec2-2e58a7bcb1f7 82a71a50e8f0a2225e76b1edb78e1eae { 'aliquot_tag': 'ALQ_e4c87e3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00017.RNA-Seq.R2_L004.T C3L-00017 PDA RNA-Seq tumor CPT0000250008 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L004_R2_001.fastq.gz 4020489440 FASTQ R2_L004 unaligned CPTAC3 4f7a1cdc-e30a-407f-927d-3eb0e4185534 cab2fec0f481139de189358c73230131 { 'aliquot_tag': 'ALQ_9334f984', 'gdc_sample_type': 'Primary Tumor' } -C3L-00017.RNA-Seq.R2_L007.A C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 180508_UNC31-K00269_0127_AHTV7YBBXX_ACTGAT_S59_L007_R2_001.fastq.gz 4682486832 FASTQ R2_L007 unaligned CPTAC3 8f7d0b77-134e-4216-9d8d-411f0d7ed0ed 41c922b894a8950361f502647b659222 { 'aliquot_tag': 'ALQ_e4c87e3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00017.RNA-Seq.genomic.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 b6fa7c32-8223-4504-b2ba-ad9501078c78.rna_seq.genomic.gdc_realn.bam 9982605016 BAM genomic harmonized CPTAC3 5ab6faef-c481-4d0c-92f9-5944b7dfd039 986d14f57362a146f385d443ace2db4b { 'aliquot_tag': 'ALQ_e4c87e3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00017.RNA-Seq.genomic.T.hg38 C3L-00017 PDA RNA-Seq tumor CPT0000250008 7a936c08-37bd-4b05-8c63-f54217a79e1a.rna_seq.genomic.gdc_realn.bam 7422416912 BAM genomic harmonized CPTAC3 1ba99f67-3232-4c24-99d1-6e0e25129e33 6c0c18c9b39ea991cab51953849e8a2c { 'aliquot_tag': 'ALQ_9334f984', 'gdc_sample_type': 'Primary Tumor' } +C3L-00017.RNA-Seq.R1_L004.T C3L-00017 PDA RNA-Seq tumor CPT0000250008 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L004_R1_001.fastq.gz 3555365035 FASTQ R1_L004 unaligned CPTAC3 d2b5f6b3-828b-4320-9e4d-4b2eaa4e7e6f 74d89675af92eec43b7f5347e678c16a { 'aliquot_tag': 'ALQ_9334f984', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00017.RNA-Seq.R1_L007.A C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 180508_UNC31-K00269_0127_AHTV7YBBXX_ACTGAT_S59_L007_R1_001.fastq.gz 4470007340 FASTQ R1_L007 unaligned CPTAC3 7829f978-5fd7-436a-9ec2-2e58a7bcb1f7 82a71a50e8f0a2225e76b1edb78e1eae { 'aliquot_tag': 'ALQ_e4c87e3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00017.RNA-Seq.R2_L004.T C3L-00017 PDA RNA-Seq tumor CPT0000250008 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L004_R2_001.fastq.gz 4020489440 FASTQ R2_L004 unaligned CPTAC3 4f7a1cdc-e30a-407f-927d-3eb0e4185534 cab2fec0f481139de189358c73230131 { 'aliquot_tag': 'ALQ_9334f984', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00017.RNA-Seq.R2_L007.A C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 180508_UNC31-K00269_0127_AHTV7YBBXX_ACTGAT_S59_L007_R2_001.fastq.gz 4682486832 FASTQ R2_L007 unaligned CPTAC3 8f7d0b77-134e-4216-9d8d-411f0d7ed0ed 41c922b894a8950361f502647b659222 { 'aliquot_tag': 'ALQ_e4c87e3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-00017.RNA-Seq.transcriptome.A.hg38 C3L-00017 PDA RNA-Seq tissue_normal CPT0000270006 b6fa7c32-8223-4504-b2ba-ad9501078c78.rna_seq.transcriptome.gdc_realn.bam 11565402806 BAM transcriptome harmonized CPTAC3 61e5bc4d-5850-4b8d-a324-9ab1101fec80 383c8a2a1900b8fbab791774f096fbbd { 'aliquot_tag': 'ALQ_e4c87e3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00017.RNA-Seq.transcriptome.T.hg38 C3L-00017 PDA RNA-Seq tumor CPT0000250008 7a936c08-37bd-4b05-8c63-f54217a79e1a.rna_seq.transcriptome.gdc_realn.bam 10322547280 BAM transcriptome harmonized CPTAC3 da0d3a7a-7e22-4a23-9111-7a2070097da3 3f2ccdf0a555de7c2640e255e8be5cc2 { 'aliquot_tag': 'ALQ_9334f984', 'gdc_sample_type': 'Primary Tumor' } C3L-00017.Targeted.T C3L-00017 PDA Targeted Sequencing tumor CPT0000250005_1 CPT0000250005_1.CustomSelection.RP-1303.PDO-18786.bam 5165621997 BAM aligned CPTAC3 30e70748-ade6-4d8e-a4a3-52abe0007a5d fd9ab30598aafba43c7f420a69828ad6 { 'aliquot_tag': 'ALQ_be7244ce', 'gdc_sample_type': 'Primary Tumor' } @@ -760,11 +1156,11 @@ C3L-00019.MethArray.Green.T C3L-00019 GBM Methylation Array tumor CPT0017430007 C3L-00019.MethArray.Red.T C3L-00019 GBM Methylation Array tumor CPT0017430007 202176300039_R07C01_Red.idat 13676224 IDAT Red NA CPTAC3 84cab415-df9e-4327-8131-5e23e7f56605 c4de49c5a3408557f7d7d7e43a6305b0 { 'aliquot_tag': 'ALQ_539fccb8', 'gdc_sample_type': 'Primary Tumor' } C3L-00019.miRNA-Seq.T C3L-00019 GBM miRNA-Seq tumor CPT0017430010 181012_UNC32-K00270_0124_AH223CBBXY_CCGTCC_S37_L004_R1_001.unaln.bam 264088211 BAM unaligned CPTAC3 44f1bd93-573b-47d3-bb99-0520b569a493 a142fc04542ba593cf7b8cba5fcec06d { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor' } C3L-00019.miRNA-Seq.T.hg38 C3L-00019 GBM miRNA-Seq tumor CPT0017430010 e0b00f82-20c3-45ee-ae64-f194146b8f3f_mirnaseq_gdc_realn.bam 297729849 BAM harmonized CPTAC3 7697c569-2851-4037-86d1-9f9d3de3cb4c 097c32b4b6582a11864a5a7299adb7df { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00019.RNA-Seq.chimeric.T.hg38 C3L-00019 GBM RNA-Seq tumor CPT0017430010 781899c2-5da0-4d45-a187-e2a34dfd4e3e.rna_seq.chimeric.gdc_realn.bam 122163446 BAM chimeric harmonized CPTAC3 6902fb79-759a-4625-b42f-d308e20cf4bb 6f2497b873bd6eb18821c2fed491fb88 { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00019.RNA-Seq.genomic.T.hg38 C3L-00019 GBM RNA-Seq tumor CPT0017430010 781899c2-5da0-4d45-a187-e2a34dfd4e3e.rna_seq.genomic.gdc_realn.bam 6795905186 BAM genomic harmonized CPTAC3 146c76d9-b5d6-44af-a828-c623bbb59d17 7af498e891fb272f41aba5d0e1e5e416 { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00019.RNA-Seq.R1_L004.T C3L-00019 GBM RNA-Seq tumor CPT0017430010 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L004_R1_001.fastq.gz 3551739616 FASTQ R1_L004 unaligned CPTAC3 7ae23e9f-db8a-4d48-9221-2e904d412114 dc14a43a902a5977812c3d1919208664 { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00019.RNA-Seq.R2_L004.T C3L-00019 GBM RNA-Seq tumor CPT0017430010 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L004_R2_001.fastq.gz 3845745206 FASTQ R2_L004 unaligned CPTAC3 dd80bb19-be20-4406-8aa8-f0761672fd0d 1ff76a2f452077f9efe6feb0a9352a17 { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00019.RNA-Seq.transcriptome.T.hg38 C3L-00019 GBM RNA-Seq tumor CPT0017430010 781899c2-5da0-4d45-a187-e2a34dfd4e3e.rna_seq.transcriptome.gdc_realn.bam 7605674446 BAM transcriptome harmonized CPTAC3 eec1a9b0-0634-4db6-8127-c30d8e5842b9 d4dd2f3eafd22d4e3ba44121044d07ff { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00019.RNA-Seq.chimeric.T.hg38 C3L-00019 GBM RNA-Seq tumor CPT0017430010 1d7b2f2a-5812-430e-a71c-45094a3286d8.rna_seq.chimeric.gdc_realn.bam 122130421 BAM chimeric harmonized CPTAC3 21132092-cc82-4d24-bd69-9079ef88cb99 c97e2cc8407438da737bb4ce8eb989a8 { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00019.RNA-Seq.genomic.T.hg38 C3L-00019 GBM RNA-Seq tumor CPT0017430010 1d7b2f2a-5812-430e-a71c-45094a3286d8.rna_seq.genomic.gdc_realn.bam 6796368612 BAM genomic harmonized CPTAC3 b2931683-5dca-4f8c-86b2-c427f7e7cdda 6b2ce0371d4c6de1f4007ead74a4c8f6 { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00019.RNA-Seq.R1_L004.T C3L-00019 GBM RNA-Seq tumor CPT0017430010 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L004_R1_001.fastq.gz 3551739616 FASTQ R1_L004 unaligned CPTAC3 7ae23e9f-db8a-4d48-9221-2e904d412114 dc14a43a902a5977812c3d1919208664 { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00019.RNA-Seq.R2_L004.T C3L-00019 GBM RNA-Seq tumor CPT0017430010 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L004_R2_001.fastq.gz 3845745206 FASTQ R2_L004 unaligned CPTAC3 dd80bb19-be20-4406-8aa8-f0761672fd0d 1ff76a2f452077f9efe6feb0a9352a17 { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00019.RNA-Seq.transcriptome.T.hg38 C3L-00019 GBM RNA-Seq tumor CPT0017430010 1d7b2f2a-5812-430e-a71c-45094a3286d8.rna_seq.transcriptome.gdc_realn.bam 8900250796 BAM transcriptome harmonized CPTAC3 566679d6-ffee-45d4-98e9-7c0f39229d82 c00f9a072bae1925367df20315d1bb0c { 'aliquot_tag': 'ALQ_d4e0685a', 'gdc_sample_type': 'Primary Tumor' } C3L-00019.WGS.N C3L-00019 GBM WGS blood_normal CPT0015360002 CPT0015360002.WholeGenome.RP-1303.bam 84629196931 BAM aligned CPTAC3 6a04ff8a-1715-4227-9e22-8741e30667ba 05ab217f7ff24b348271e1008f666dbb { 'aliquot_tag': 'ALQ_618f96d6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00019.WGS.N.hg38 C3L-00019 GBM WGS blood_normal CPT0015360002 383c9539-9c57-47c4-90f3-c0453068ff6f_gdc_realn.bam 130962659926 BAM harmonized CPTAC3 2aa44cc1-38d3-49c3-a03c-c6396c979491 e56990b770b4e9a85342d86a177ebc59 { 'aliquot_tag': 'ALQ_618f96d6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00019.WGS.T C3L-00019 GBM WGS tumor CPT0017430007 CPT0017430007.WholeGenome.RP-1303.bam 80024112915 BAM aligned CPTAC3 4e087f50-76a6-45cd-9f47-bbffe624739d ce415eb217eaa57a7111310b543de405 { 'aliquot_tag': 'ALQ_539fccb8', 'gdc_sample_type': 'Primary Tumor' } @@ -784,11 +1180,11 @@ C3L-00026.miRNA-Seq.T.hg38 C3L-00026 CCRCC miRNA-Seq tumor CPT0001500164 fe2247e C3L-00026.RNA-Seq.chimeric.A.hg38 C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 aea8ab5f-acbb-47a7-b209-3c8ce9edf308.rna_seq.chimeric.gdc_realn.bam 70484774 BAM chimeric harmonized CPTAC3 c323dc33-9c51-4ecc-9548-17fe3ebc43dd c5f028e6b75eba2f2db38e40683155f0 { 'aliquot_tag': 'ALQ_3a7e494f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00026.RNA-Seq.chimeric.T.hg38 C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 59ba3c66-521b-4224-ace6-62e7a2c89a65.rna_seq.chimeric.gdc_realn.bam 74899587 BAM chimeric harmonized CPTAC3 6999cb2d-3519-414b-a9bb-4caefca18b8c d182038f21995655d0c6aecf7ee1c753 { 'aliquot_tag': 'ALQ_be88cc62', 'gdc_sample_type': 'Primary Tumor' } C3L-00026.RNA-Seq.genomic.A.hg38 C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 aea8ab5f-acbb-47a7-b209-3c8ce9edf308.rna_seq.genomic.gdc_realn.bam 8641894267 BAM genomic harmonized CPTAC3 c4b806cb-9ab2-406f-9347-b3b1a71d3eaa 51ca6cf6cb38f2cb247f7015fa3fc768 { 'aliquot_tag': 'ALQ_3a7e494f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00026.RNA-Seq.genomic.T.hg38 C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 59ba3c66-521b-4224-ace6-62e7a2c89a65.rna_seq.genomic.gdc_realn.bam 8797894258 BAM genomic harmonized CPTAC3 8a8a7dea-b9c0-4c1a-a4d7-e113baa7f37e 9f9e22ddd9d1b6bbb0f7c659e699e8c5 { 'aliquot_tag': 'ALQ_be88cc62', 'gdc_sample_type': 'Primary Tumor' } -C3L-00026.RNA-Seq.R1_L005.T C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 170802_UNC31-K00269_0072_AHK3GVBBXX_ATGTCA_S16_L005_R1_001.fastq.gz 4211339697 FASTQ R1_L005 unaligned CPTAC3 aa4fa0b3-1708-4638-8bab-55b0ba3f5248 c080508a0dc489706dbf54f7ddfd08cd { 'aliquot_tag': 'ALQ_be88cc62', 'gdc_sample_type': 'Primary Tumor' } -C3L-00026.RNA-Seq.R1_L008.A C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATCACG_S58_L008_R1_001.fastq.gz 4302255408 FASTQ R1_L008 unaligned CPTAC3 4f85aa59-7db7-49dc-aa05-7b6b027b2791 c892c90f42d872f030f21f6ed7dbb631 { 'aliquot_tag': 'ALQ_3a7e494f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00026.RNA-Seq.R2_L005.T C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 170802_UNC31-K00269_0072_AHK3GVBBXX_ATGTCA_S16_L005_R2_001.fastq.gz 4627325177 FASTQ R2_L005 unaligned CPTAC3 b25a3a34-58ce-4d86-9e1b-c21a39ee91e4 390dd7454a32b452d70d6cc7b8028f3f { 'aliquot_tag': 'ALQ_be88cc62', 'gdc_sample_type': 'Primary Tumor' } -C3L-00026.RNA-Seq.R2_L008.A C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATCACG_S58_L008_R2_001.fastq.gz 4209761756 FASTQ R2_L008 unaligned CPTAC3 9648977f-b52a-4043-9b7a-04ecc1647e98 1ab4fdab8936f80704d22e59942ed13d { 'aliquot_tag': 'ALQ_3a7e494f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00026.RNA-Seq.genomic.T.hg38 C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 59ba3c66-521b-4224-ace6-62e7a2c89a65.rna_seq.genomic.gdc_realn.bam 8797894258 BAM genomic harmonized CPTAC3 755caff9-dc86-4e8e-bfdb-72a195611e5e 9f9e22ddd9d1b6bbb0f7c659e699e8c5 { 'aliquot_tag': 'ALQ_be88cc62', 'gdc_sample_type': 'Primary Tumor' } +C3L-00026.RNA-Seq.R1_L005.T C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 170802_UNC31-K00269_0072_AHK3GVBBXX_ATGTCA_S16_L005_R1_001.fastq.gz 4211339697 FASTQ R1_L005 unaligned CPTAC3 aa4fa0b3-1708-4638-8bab-55b0ba3f5248 c080508a0dc489706dbf54f7ddfd08cd { 'aliquot_tag': 'ALQ_be88cc62', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00026.RNA-Seq.R1_L008.A C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATCACG_S58_L008_R1_001.fastq.gz 4302255408 FASTQ R1_L008 unaligned CPTAC3 4f85aa59-7db7-49dc-aa05-7b6b027b2791 c892c90f42d872f030f21f6ed7dbb631 { 'aliquot_tag': 'ALQ_3a7e494f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00026.RNA-Seq.R2_L005.T C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 170802_UNC31-K00269_0072_AHK3GVBBXX_ATGTCA_S16_L005_R2_001.fastq.gz 4627325177 FASTQ R2_L005 unaligned CPTAC3 b25a3a34-58ce-4d86-9e1b-c21a39ee91e4 390dd7454a32b452d70d6cc7b8028f3f { 'aliquot_tag': 'ALQ_be88cc62', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-00026.RNA-Seq.R2_L008.A C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATCACG_S58_L008_R2_001.fastq.gz 4209761756 FASTQ R2_L008 unaligned CPTAC3 9648977f-b52a-4043-9b7a-04ecc1647e98 1ab4fdab8936f80704d22e59942ed13d { 'aliquot_tag': 'ALQ_3a7e494f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00026.RNA-Seq.transcriptome.A.hg38 C3L-00026 CCRCC RNA-Seq tissue_normal CPT0001510006 aea8ab5f-acbb-47a7-b209-3c8ce9edf308.rna_seq.transcriptome.gdc_realn.bam 11270808038 BAM transcriptome harmonized CPTAC3 611def6f-a25a-4df0-8965-17c63547d3c2 4a5501aed8e4afff1b5999cc55da77df { 'aliquot_tag': 'ALQ_3a7e494f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00026.RNA-Seq.transcriptome.T.hg38 C3L-00026 CCRCC RNA-Seq tumor CPT0001500164 59ba3c66-521b-4224-ace6-62e7a2c89a65.rna_seq.transcriptome.gdc_realn.bam 12490368435 BAM transcriptome harmonized CPTAC3 3552cc9a-e3b0-484b-862f-742d61253817 2997bde8d8afa17f7cb9b536d44c3995 { 'aliquot_tag': 'ALQ_be88cc62', 'gdc_sample_type': 'Primary Tumor' } C3L-00026.WGS.A C3L-00026 CCRCC WGS tissue_normal CPT0001510009 CPT0001510009.WholeGenome.RP-1303.bam 56827082574 BAM aligned CPTAC3 06d06fdd-e16f-4652-879b-9034a91626b7 6f39be937d7b1f47d32e3e3fc85374cb { 'aliquot_tag': 'ALQ_aac154de', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -807,11 +1203,11 @@ C3L-00029.MethArray.Green.T C3L-00029 SAR Methylation Array tumor CPT0001000005 C3L-00029.MethArray.Red.T C3L-00029 SAR Methylation Array tumor CPT0001000005 202184990066_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 29720c1c-ae42-4df2-a28a-3cc78c9fe7bb d2f3e118eb3263a12230b3b66e4e09a6 { 'aliquot_tag': 'ALQ_cedaa0f6', 'gdc_sample_type': 'Primary Tumor' } C3L-00029.miRNA-Seq.T C3L-00029 SAR miRNA-Seq tumor CPT0001000164 181113_UNC31-K00269_0164_AH23NNBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 320594561 BAM unaligned CPTAC3 981a34d1-38e1-4799-848f-de4fa4add2ca 79005404e980e57165072deb2465aced { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor' } C3L-00029.miRNA-Seq.T.hg38 C3L-00029 SAR miRNA-Seq tumor CPT0001000164 5cebba2b-2399-4d25-ad36-a2cb54cf99df_mirnaseq_gdc_realn.bam 360391898 BAM harmonized CPTAC3 dfe79d0c-2cbf-41d4-95bb-7ff56135ae29 faf3413376ce2f3682c6980ad4aaa637 { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00029.RNA-Seq.chimeric.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 6ee3a836-32f7-4ae8-9fdd-7e7f6ec20626.rna_seq.chimeric.gdc_realn.bam 77058801 BAM chimeric harmonized CPTAC3 554f58d9-c391-4613-afd5-9b2186905bca 15aff46a0bd698518732b2ca10302f78 { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00029.RNA-Seq.genomic.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 6ee3a836-32f7-4ae8-9fdd-7e7f6ec20626.rna_seq.genomic.gdc_realn.bam 7796186674 BAM genomic harmonized CPTAC3 da94021e-d10f-44a8-b061-c9f37ebff416 36895328be8833fa58fffb1afb43918d { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00029.RNA-Seq.R1_L005.T C3L-00029 SAR RNA-Seq tumor CPT0001000164 170802_UNC31-K00269_0072_AHK3GVBBXX_CCGTCC_S15_L005_R1_001.fastq.gz 3711574784 FASTQ R1_L005 unaligned CPTAC3 75f83913-b8dc-4d06-b26b-d9f3f8358054 8556730781b046f1090197d315e2b7c1 { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00029.RNA-Seq.R2_L005.T C3L-00029 SAR RNA-Seq tumor CPT0001000164 170802_UNC31-K00269_0072_AHK3GVBBXX_CCGTCC_S15_L005_R2_001.fastq.gz 4058006716 FASTQ R2_L005 unaligned CPTAC3 9f8cd923-494c-45f8-9519-4fb29f424b33 8bbf8654bfd2ac08513f24cf0bdadee2 { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00029.RNA-Seq.transcriptome.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 6ee3a836-32f7-4ae8-9fdd-7e7f6ec20626.rna_seq.transcriptome.gdc_realn.bam 8712867811 BAM transcriptome harmonized CPTAC3 aa8b27f5-06e1-4553-becd-086ca3da51ab a678a0eae1d2dfc5efb34643251babb9 { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00029.RNA-Seq.chimeric.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 e6692486-f91a-43de-906c-e00f469d224f.rna_seq.chimeric.gdc_realn.bam 77023763 BAM chimeric harmonized CPTAC3 20c1cdba-eb9a-4cac-b6d4-de8ff07b6ae9 48086539c6e88e7a22e14e7b1f1e6677 { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00029.RNA-Seq.genomic.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 e6692486-f91a-43de-906c-e00f469d224f.rna_seq.genomic.gdc_realn.bam 7796614883 BAM genomic harmonized CPTAC3 307e1b0f-dcf7-4390-bb9a-1e04815080ce 39dfef6e55d7c67b780d7aa32b64ae34 { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00029.RNA-Seq.R1_L005.T C3L-00029 SAR RNA-Seq tumor CPT0001000164 170802_UNC31-K00269_0072_AHK3GVBBXX_CCGTCC_S15_L005_R1_001.fastq.gz 3711574784 FASTQ R1_L005 unaligned CPTAC3 75f83913-b8dc-4d06-b26b-d9f3f8358054 8556730781b046f1090197d315e2b7c1 { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00029.RNA-Seq.R2_L005.T C3L-00029 SAR RNA-Seq tumor CPT0001000164 170802_UNC31-K00269_0072_AHK3GVBBXX_CCGTCC_S15_L005_R2_001.fastq.gz 4058006716 FASTQ R2_L005 unaligned CPTAC3 9f8cd923-494c-45f8-9519-4fb29f424b33 8bbf8654bfd2ac08513f24cf0bdadee2 { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-00029.RNA-Seq.transcriptome.T.hg38 C3L-00029 SAR RNA-Seq tumor CPT0001000164 e6692486-f91a-43de-906c-e00f469d224f.rna_seq.transcriptome.gdc_realn.bam 9886389928 BAM transcriptome harmonized CPTAC3 6dc883a5-4f0b-4327-a973-9e51a1932162 7d461994e396dc9b849101fd416a3df4 { 'aliquot_tag': 'ALQ_ee455dd1', 'gdc_sample_type': 'Primary Tumor' } C3L-00029.WGS.N C3L-00029 SAR WGS blood_normal CPT0000000163 CPT0000000163.WholeGenome.RP-1303.bam 79156050194 BAM aligned CPTAC3 7c9d3332-8812-4d65-a49b-aa48580f8575 21088a933be9c92ec769ccd7c563e849 { 'aliquot_tag': 'ALQ_d656c3c6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00029.WGS.N.hg38 C3L-00029 SAR WGS blood_normal CPT0000000163 78e3baaf-7223-45a7-9126-5f5694c4e36a_gdc_realn.bam 121288730501 BAM harmonized CPTAC3 54554926-c19a-43cb-9bf6-896a1a6d6765 c95fdd97e2e7185ccef4f3c627c53cd1 { 'aliquot_tag': 'ALQ_d656c3c6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00029.WGS.T C3L-00029 SAR WGS tumor CPT0001000005 CPT0001000005.WholeGenome.RP-1303.bam 75787194275 BAM aligned CPTAC3 95a6ffce-ecea-4832-96bc-945f36da4aeb ded2ee7994319804eacef38a5a00e8ef { 'aliquot_tag': 'ALQ_cedaa0f6', 'gdc_sample_type': 'Primary Tumor' } @@ -825,12 +1221,15 @@ C3L-00032.MethArray.Red.T C3L-00032 UCEC Methylation Array tumor CPT0001420005 2 C3L-00032.miRNA-Seq.T C3L-00032 UCEC miRNA-Seq tumor CPT0001420164 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L001_R1_001.unaln.bam 225139167 BAM unaligned CPTAC3 3b3e6020-a967-493f-b19b-86b14b28ee50 9c580bb8aac952f54ff62811b1bff4dc { 'aliquot_tag': 'ALQ_f144ca7', 'gdc_sample_type': 'Primary Tumor' } C3L-00032.miRNA-Seq.T.hg38 C3L-00032 UCEC miRNA-Seq tumor CPT0001420164 f4a5b588-dee4-48b0-880a-e2ac2a5c87d7_mirnaseq_gdc_realn.bam 246200924 BAM harmonized CPTAC3 f7e768cd-245f-4f33-ac75-e874907d92a6 cfce7326413875bcf7eac441197588d2 { 'aliquot_tag': 'ALQ_f144ca7', 'gdc_sample_type': 'Primary Tumor' } C3L-00032.RNA-Seq.chimeric.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0001420164 f8d01853-9249-4385-840f-a008345120f0.rna_seq.chimeric.gdc_realn.bam 67237437 BAM chimeric harmonized CPTAC3 9a75895a-fbc9-464d-abab-4e4fd167d332 40ca6387bed0591d562b13ce1d920fbc { 'aliquot_tag': 'ALQ_f144ca7', 'gdc_sample_type': 'Primary Tumor' } +C3L-00032.RNA-Seq.chimeric.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0349380001 b9484de9-3308-4eb9-8837-8625d4929b58.rna_seq.chimeric.gdc_realn.bam 160872272 BAM chimeric harmonized CPTAC3 809fec11-69ae-498e-bc60-3f7da2d62afd b17dd31d3553a1fa2a0d93206bb58d37 { 'aliquot_tag': 'ALQ_f17b21d8', 'gdc_sample_type': 'Primary Tumor' } C3L-00032.RNA-Seq.genomic.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0001420164 f8d01853-9249-4385-840f-a008345120f0.rna_seq.genomic.gdc_realn.bam 8489533560 BAM genomic harmonized CPTAC3 adba109d-cb97-4da2-a002-8c7c83e4dcfe 7102c0e1e214948bf602c4b5549f661b { 'aliquot_tag': 'ALQ_f144ca7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00032.RNA-Seq.R1_L005.T C3L-00032 UCEC RNA-Seq tumor CPT0001420164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3824767824 FASTQ R1_L005 unaligned CPTAC3 9ae968f3-691d-4db3-9977-1ab3e5af9085 42601b29cb4c2d6a64cec25a7575ba62 { 'aliquot_tag': 'ALQ_f144ca7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00032.RNA-Seq.R1_.T C3L-00032 UCEC RNA-Seq tumor CPT0349380001 20210714_P1_G9_WB7988_plate1_S80_R1_001.fastq.gz 5571302043 FASTQ R1_ unaligned CPTAC3 bfcd83b0-f3bc-4d11-93a9-d207bdddc1ff 3300d0aac581bbe35103d0af6ec8b811 { 'aliquot_tag': 'ALQ_f17b21d8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00032.RNA-Seq.R2_L005.T C3L-00032 UCEC RNA-Seq tumor CPT0001420164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4237608778 FASTQ R2_L005 unaligned CPTAC3 423b6b09-02aa-4f47-9241-f75c1dad1161 ba4d70b682cafb918c62b01756e4e3f4 { 'aliquot_tag': 'ALQ_f144ca7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00032.RNA-Seq.R2_.T C3L-00032 UCEC RNA-Seq tumor CPT0349380001 20210714_P1_G9_WB7988_plate1_S80_R2_001.fastq.gz 5840340576 FASTQ R2_ unaligned CPTAC3 d225c652-9193-4847-b2e0-cd4c88b77fbe 3471561b2096aa5ae3d2efaa52b52f71 { 'aliquot_tag': 'ALQ_f17b21d8', 'gdc_sample_type': 'Primary Tumor' } +C3L-00032.RNA-Seq.genomic.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0349380001 b9484de9-3308-4eb9-8837-8625d4929b58.rna_seq.genomic.gdc_realn.bam 8946329719 BAM genomic harmonized CPTAC3 2aea5b0a-4ab2-485f-88ae-624907c35405 414425ee8b26d75a559b25edd8a9abd0 { 'aliquot_tag': 'ALQ_f17b21d8', 'gdc_sample_type': 'Primary Tumor' } +C3L-00032.RNA-Seq.R1_L005.T C3L-00032 UCEC RNA-Seq tumor CPT0001420164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3824767824 FASTQ R1_L005 unaligned CPTAC3 9ae968f3-691d-4db3-9977-1ab3e5af9085 42601b29cb4c2d6a64cec25a7575ba62 { 'aliquot_tag': 'ALQ_f144ca7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00032.RNA-Seq.R2_L005.T C3L-00032 UCEC RNA-Seq tumor CPT0001420164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4237608778 FASTQ R2_L005 unaligned CPTAC3 423b6b09-02aa-4f47-9241-f75c1dad1161 ba4d70b682cafb918c62b01756e4e3f4 { 'aliquot_tag': 'ALQ_f144ca7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-00032.RNA-Seq.T C3L-00032 UCEC RNA-Seq tumor CPT0349380001 20210714_P1_G9_WB7988_plate1_S80_R1_001.fastq.gz 5571302043 FASTQ unaligned CPTAC3 bfcd83b0-f3bc-4d11-93a9-d207bdddc1ff 3300d0aac581bbe35103d0af6ec8b811 +C3L-00032.RNA-Seq.T C3L-00032 UCEC RNA-Seq tumor CPT0349380001 20210714_P1_G9_WB7988_plate1_S80_R2_001.fastq.gz 5840340576 FASTQ unaligned CPTAC3 d225c652-9193-4847-b2e0-cd4c88b77fbe 3471561b2096aa5ae3d2efaa52b52f71 C3L-00032.RNA-Seq.transcriptome.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0001420164 f8d01853-9249-4385-840f-a008345120f0.rna_seq.transcriptome.gdc_realn.bam 13224813437 BAM transcriptome harmonized CPTAC3 55be32c8-1226-4687-aa83-b45c3ee263f0 c29651b9e6c5f0871279256ef4783833 { 'aliquot_tag': 'ALQ_f144ca7', 'gdc_sample_type': 'Primary Tumor' } +C3L-00032.RNA-Seq.transcriptome.T.hg38 C3L-00032 UCEC RNA-Seq tumor CPT0349380001 b9484de9-3308-4eb9-8837-8625d4929b58.rna_seq.transcriptome.gdc_realn.bam 5730478956 BAM transcriptome harmonized CPTAC3 335a15c1-eee8-4b2b-821a-7844d4cc1781 edec900ff65ac7db32d0348142699f31 { 'aliquot_tag': 'ALQ_f17b21d8', 'gdc_sample_type': 'Primary Tumor' } C3L-00032.WGS.N C3L-00032 UCEC WGS blood_normal CPT0000110163 CPT0000110163.WholeGenome.RP-1303.bam 126838678733 BAM aligned CPTAC3 27091176-c4d5-46a5-816c-ef22cf26f96c e4cfad074a9219c667a370468f9d82f8 { 'aliquot_tag': 'ALQ_206a39d3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00032.WGS.N.hg38 C3L-00032 UCEC WGS blood_normal CPT0000110163 97e153c1-7be4-4d7b-9d30-9545b56e6ddb_gdc_realn.bam 185157776977 BAM harmonized CPTAC3 a16b07d8-46c1-4fd9-8204-4f866aacfbec 70e523db56d68067e75bd952f710ce36 { 'aliquot_tag': 'ALQ_206a39d3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00032.WGS.T C3L-00032 UCEC WGS tumor CPT0001420005 CPT0001420005.WholeGenome.RP-1303.bam 131629095092 BAM aligned CPTAC3 4b7eee33-2cb9-4c54-b5e7-f8f72536f062 d7af1c291d9eb90b2644aaaa479dae48 { 'aliquot_tag': 'ALQ_2f8bb180', 'gdc_sample_type': 'Primary Tumor' } @@ -845,16 +1244,16 @@ C3L-00035.miRNA-Seq.A C3L-00035 SAR miRNA-Seq tissue_normal CPT0001110006 181113 C3L-00035.miRNA-Seq.A.hg38 C3L-00035 SAR miRNA-Seq tissue_normal CPT0001110006 2eb73a27-f6b8-4f65-a2b5-b16d7924a1d0_mirnaseq_gdc_realn.bam 395686770 BAM harmonized CPTAC3 cdc020a9-c7d3-4c69-b64f-872485f411e2 8ae9dc7bf70db994a1b4a1da31dcd1f8 { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00035.miRNA-Seq.T C3L-00035 SAR miRNA-Seq tumor CPT0001100164 181113_UNC31-K00269_0164_AH23NNBBXY_CAACTA_S5_L001_R1_001.unaln.bam 219852901 BAM unaligned CPTAC3 60908000-3d5c-4a19-b2cb-8bf29dfda9f3 9f2bdffa360ea2fb826f066e7870dd13 { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor' } C3L-00035.miRNA-Seq.T.hg38 C3L-00035 SAR miRNA-Seq tumor CPT0001100164 de1398ba-55b8-4db1-8b25-b16550168058_mirnaseq_gdc_realn.bam 241476818 BAM harmonized CPTAC3 6815f7be-12b8-4bbd-a2b3-5629764cc8b8 379fd4a8f12998801cc5103c2f5d46df { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor' } -C3L-00035.RNA-Seq.chimeric.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 6d91424a-9062-41e8-a399-107716f2dbe9.rna_seq.chimeric.gdc_realn.bam 53524684 BAM chimeric harmonized CPTAC3 c78c9691-8056-4b56-908d-359dc19e53b7 a7338697f2d61717ca5729763a4bcd7b { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00035.RNA-Seq.chimeric.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 dbf0b696-a535-4bba-895c-c329139c7b56.rna_seq.chimeric.gdc_realn.bam 88888170 BAM chimeric harmonized CPTAC3 737be408-f8df-4809-af15-2809edf837a1 a93a13c1be92c1aad3009bf87991fe95 { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor' } -C3L-00035.RNA-Seq.genomic.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 6d91424a-9062-41e8-a399-107716f2dbe9.rna_seq.genomic.gdc_realn.bam 9452815370 BAM genomic harmonized CPTAC3 30b589ea-207d-4886-ac90-7d9c700ba283 a94a270298f5a87e55bbc7a0ec3c23d8 { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00035.RNA-Seq.genomic.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 dbf0b696-a535-4bba-895c-c329139c7b56.rna_seq.genomic.gdc_realn.bam 8619774819 BAM genomic harmonized CPTAC3 31529425-9937-4fdb-ae01-053555af0a10 c689be2efc8217e86cf80a1e14e7cf64 { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor' } -C3L-00035.RNA-Seq.R1_L004.T C3L-00035 SAR RNA-Seq tumor CPT0001100164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGAAA_S13_L004_R1_001.fastq.gz 4056843805 FASTQ R1_L004 unaligned CPTAC3 cbda050b-36e2-456a-a463-18a053c72b35 7ec3ebe7703206ed61cc502024c4a55f { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor' } -C3L-00035.RNA-Seq.R1_L007.A C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4378527741 FASTQ R1_L007 unaligned CPTAC3 b0438f96-71ec-49c0-9969-068f201232b0 9f0f748a7f55049d9b9621b38c7eaa0b { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00035.RNA-Seq.R2_L004.T C3L-00035 SAR RNA-Seq tumor CPT0001100164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGAAA_S13_L004_R2_001.fastq.gz 4458423808 FASTQ R2_L004 unaligned CPTAC3 49de624d-41e8-48fc-a604-13c0567799af 1564c0e58f06407845e9b1a52caf93e7 { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor' } -C3L-00035.RNA-Seq.R2_L007.A C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4714952191 FASTQ R2_L007 unaligned CPTAC3 177c4c24-764b-42ee-9af8-6ec5825562f4 00372e7ed0a1b41176a2f06a62023eae { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00035.RNA-Seq.transcriptome.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 6d91424a-9062-41e8-a399-107716f2dbe9.rna_seq.transcriptome.gdc_realn.bam 9841796976 BAM transcriptome harmonized CPTAC3 c349144f-ab17-4382-a8e2-7f809f601278 8ff7de393cbb42bdf60f49dc5a06ba25 { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00035.RNA-Seq.transcriptome.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 dbf0b696-a535-4bba-895c-c329139c7b56.rna_seq.transcriptome.gdc_realn.bam 9081439890 BAM transcriptome harmonized CPTAC3 b17caec5-f1d7-4a63-92c9-e379a9287ef3 1da3a396b230554094dfc3c45a0835be { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor' } +C3L-00035.RNA-Seq.chimeric.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 0b4a4047-db45-4131-a960-b7b83fca4b99.rna_seq.chimeric.gdc_realn.bam 53495188 BAM chimeric harmonized CPTAC3 c1b80a3a-f004-4f8b-ab2d-c1951bc89c06 89e294c3aaf17caad82ce99f51eaaa2f { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00035.RNA-Seq.chimeric.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 79d733a0-97a4-41a6-adde-3dacb159bb42.rna_seq.chimeric.gdc_realn.bam 88862855 BAM chimeric harmonized CPTAC3 f9ce9f83-d141-485a-8eb1-c18c84ee815d 6c5d1e35a6dbcacdd34bb0738ba7a7fe { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor' } +C3L-00035.RNA-Seq.genomic.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 0b4a4047-db45-4131-a960-b7b83fca4b99.rna_seq.genomic.gdc_realn.bam 9453697706 BAM genomic harmonized CPTAC3 34b695d6-3877-4fb0-a8d9-0bec90b82667 3811cae77fa9086429b0d5b6049c8275 { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00035.RNA-Seq.genomic.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 79d733a0-97a4-41a6-adde-3dacb159bb42.rna_seq.genomic.gdc_realn.bam 8620653265 BAM genomic harmonized CPTAC3 458ffbe0-84b0-45bb-93a3-38832937e064 823f5edc397da0a11a20e14d5987c679 { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor' } +C3L-00035.RNA-Seq.R1_L004.T C3L-00035 SAR RNA-Seq tumor CPT0001100164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGAAA_S13_L004_R1_001.fastq.gz 4056843805 FASTQ R1_L004 unaligned CPTAC3 cbda050b-36e2-456a-a463-18a053c72b35 7ec3ebe7703206ed61cc502024c4a55f { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00035.RNA-Seq.R1_L007.A C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4378527741 FASTQ R1_L007 unaligned CPTAC3 b0438f96-71ec-49c0-9969-068f201232b0 9f0f748a7f55049d9b9621b38c7eaa0b { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00035.RNA-Seq.R2_L004.T C3L-00035 SAR RNA-Seq tumor CPT0001100164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGAAA_S13_L004_R2_001.fastq.gz 4458423808 FASTQ R2_L004 unaligned CPTAC3 49de624d-41e8-48fc-a604-13c0567799af 1564c0e58f06407845e9b1a52caf93e7 { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00035.RNA-Seq.R2_L007.A C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4714952191 FASTQ R2_L007 unaligned CPTAC3 177c4c24-764b-42ee-9af8-6ec5825562f4 00372e7ed0a1b41176a2f06a62023eae { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-00035.RNA-Seq.transcriptome.A.hg38 C3L-00035 SAR RNA-Seq tissue_normal CPT0001110006 0b4a4047-db45-4131-a960-b7b83fca4b99.rna_seq.transcriptome.gdc_realn.bam 11367309490 BAM transcriptome harmonized CPTAC3 b34e0f4e-7283-4120-83a6-0b3dd824f6aa e7fa11f0e5ab6257193ee925a2b35894 { 'aliquot_tag': 'ALQ_a1ef0b59', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00035.RNA-Seq.transcriptome.T.hg38 C3L-00035 SAR RNA-Seq tumor CPT0001100164 79d733a0-97a4-41a6-adde-3dacb159bb42.rna_seq.transcriptome.gdc_realn.bam 10483984278 BAM transcriptome harmonized CPTAC3 fae81c19-860c-4f28-a876-c7b72ad8f1ec 42abe89025173286b7ac40b11eeb391d { 'aliquot_tag': 'ALQ_25198e74', 'gdc_sample_type': 'Primary Tumor' } C3L-00035.WGS.A C3L-00035 SAR WGS tissue_normal CPT0001110009 CPT0001110009.WholeGenome.RP-1303.bam 60212243664 BAM aligned CPTAC3 3628cafc-ce00-40c1-a364-3f1a8ca449e7 e5a4d13d9e2f7dbdf5fcdf4e468538eb { 'aliquot_tag': 'ALQ_315016c8', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00035.WGS.A.hg38 C3L-00035 SAR WGS tissue_normal CPT0001110009 5b4f85ae-83e1-4911-b8a6-4dc07423dc41_wgs_gdc_realn.bam 87903887799 BAM harmonized CPTAC3 311a7aa0-a35f-4601-a6b7-cd1be6936913 90b8caa080ff1068f12d664328604528 { 'aliquot_tag': 'ALQ_315016c8', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00035.WGS.N C3L-00035 SAR WGS blood_normal CPT0000030163 CPT0000030163.WholeGenome.RP-1303.bam 84386892225 BAM aligned CPTAC3 a39fa45b-2a0a-4a0b-8157-42169bd6dfac 23ced97a5fa0b46043f1a71bc4fbe723 { 'aliquot_tag': 'ALQ_91f6b916', 'gdc_sample_type': 'Blood Derived Normal' } @@ -878,11 +1277,11 @@ C3L-00079.miRNA-Seq.T.hg38 C3L-00079 CCRCC miRNA-Seq tumor CPT0001260164 9836769 C3L-00079.RNA-Seq.chimeric.A.hg38 C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 0f709910-bda7-49ee-ac17-eed7477f79f1.rna_seq.chimeric.gdc_realn.bam 70075995 BAM chimeric harmonized CPTAC3 885db1d9-b636-4882-96cd-c41a503885fb 48508146230988713244d1894733fce8 { 'aliquot_tag': 'ALQ_a83b8c57', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00079.RNA-Seq.chimeric.T.hg38 C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 24314fd5-f34b-417f-862b-98988c2a92b1.rna_seq.chimeric.gdc_realn.bam 227050579 BAM chimeric harmonized CPTAC3 38c7bb30-383e-4103-b93b-5ce4161b0950 edf3fba316a8c971d97a8335424273f0 { 'aliquot_tag': 'ALQ_2ccd097a', 'gdc_sample_type': 'Primary Tumor' } C3L-00079.RNA-Seq.genomic.A.hg38 C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 0f709910-bda7-49ee-ac17-eed7477f79f1.rna_seq.genomic.gdc_realn.bam 7938074317 BAM genomic harmonized CPTAC3 ef4131fa-9339-445d-89b8-2233f29252d9 1a4fc065ec2ab1f4487a49e8f7bf24f6 { 'aliquot_tag': 'ALQ_a83b8c57', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00079.RNA-Seq.genomic.T.hg38 C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 24314fd5-f34b-417f-862b-98988c2a92b1.rna_seq.genomic.gdc_realn.bam 7790430116 BAM genomic harmonized CPTAC3 410a2aac-0175-4ea6-9bc2-9548eb769a14 e5a7476bea5e23427b20d2ac8f701dc2 { 'aliquot_tag': 'ALQ_2ccd097a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00079.RNA-Seq.R1_L007.T C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGGCC_S24_L007_R1_001.fastq.gz 3940760935 FASTQ R1_L007 unaligned CPTAC3 e328d98d-fa50-475e-a1b0-b9df37891c4e ff6181d9102864bf12b78a67c03570a3 { 'aliquot_tag': 'ALQ_2ccd097a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00079.RNA-Seq.R1_L008.A C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 171208_UNC32-K00270_0071_BHN7K5BBXX_CGATGT_S60_L008_R1_001.fastq.gz 3853474075 FASTQ R1_L008 unaligned CPTAC3 90767875-a3ca-41b8-9528-a9728f3ca8ec cbcb67e23abbe576ddb4757922ae47cd { 'aliquot_tag': 'ALQ_a83b8c57', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00079.RNA-Seq.R2_L007.T C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGGCC_S24_L007_R2_001.fastq.gz 4337346188 FASTQ R2_L007 unaligned CPTAC3 8dc8eb7a-c5f2-4bfd-a190-d62f38d82ada 2680b3778eaad97464eda1a61a1ae574 { 'aliquot_tag': 'ALQ_2ccd097a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00079.RNA-Seq.R2_L008.A C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 171208_UNC32-K00270_0071_BHN7K5BBXX_CGATGT_S60_L008_R2_001.fastq.gz 4192267366 FASTQ R2_L008 unaligned CPTAC3 28d7f941-8d68-4955-a8ef-0a0d9c2b67ac cbac527244e14a14bb0ae30a07c52c19 { 'aliquot_tag': 'ALQ_a83b8c57', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00079.RNA-Seq.genomic.T.hg38 C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 24314fd5-f34b-417f-862b-98988c2a92b1.rna_seq.genomic.gdc_realn.bam 7790430116 BAM genomic harmonized CPTAC3 3a7f21e6-a20c-4541-b7ef-dbd16a17a092 e5a7476bea5e23427b20d2ac8f701dc2 { 'aliquot_tag': 'ALQ_2ccd097a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00079.RNA-Seq.R1_L007.T C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGGCC_S24_L007_R1_001.fastq.gz 3940760935 FASTQ R1_L007 unaligned CPTAC3 e328d98d-fa50-475e-a1b0-b9df37891c4e ff6181d9102864bf12b78a67c03570a3 { 'aliquot_tag': 'ALQ_2ccd097a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00079.RNA-Seq.R1_L008.A C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 171208_UNC32-K00270_0071_BHN7K5BBXX_CGATGT_S60_L008_R1_001.fastq.gz 3853474075 FASTQ R1_L008 unaligned CPTAC3 90767875-a3ca-41b8-9528-a9728f3ca8ec cbcb67e23abbe576ddb4757922ae47cd { 'aliquot_tag': 'ALQ_a83b8c57', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00079.RNA-Seq.R2_L007.T C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTGGCC_S24_L007_R2_001.fastq.gz 4337346188 FASTQ R2_L007 unaligned CPTAC3 8dc8eb7a-c5f2-4bfd-a190-d62f38d82ada 2680b3778eaad97464eda1a61a1ae574 { 'aliquot_tag': 'ALQ_2ccd097a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-00079.RNA-Seq.R2_L008.A C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 171208_UNC32-K00270_0071_BHN7K5BBXX_CGATGT_S60_L008_R2_001.fastq.gz 4192267366 FASTQ R2_L008 unaligned CPTAC3 28d7f941-8d68-4955-a8ef-0a0d9c2b67ac cbac527244e14a14bb0ae30a07c52c19 { 'aliquot_tag': 'ALQ_a83b8c57', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00079.RNA-Seq.transcriptome.A.hg38 C3L-00079 CCRCC RNA-Seq tissue_normal CPT0001270006 0f709910-bda7-49ee-ac17-eed7477f79f1.rna_seq.transcriptome.gdc_realn.bam 10037580390 BAM transcriptome harmonized CPTAC3 321d038f-86b1-4899-b168-80121e52a8c9 d683745c677a12cd61bc7210ff905ecf { 'aliquot_tag': 'ALQ_a83b8c57', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00079.RNA-Seq.transcriptome.T.hg38 C3L-00079 CCRCC RNA-Seq tumor CPT0001260164 24314fd5-f34b-417f-862b-98988c2a92b1.rna_seq.transcriptome.gdc_realn.bam 11312942767 BAM transcriptome harmonized CPTAC3 d130ff4e-24f5-4fac-b5aa-622de9aa6e43 f366d5a534f5c57ca58bf43ccbbaeee1 { 'aliquot_tag': 'ALQ_2ccd097a', 'gdc_sample_type': 'Primary Tumor' } C3L-00079.WGS.A C3L-00079 CCRCC WGS tissue_normal CPT0001270009 CPT0001270009.WholeGenome.RP-1303.bam 54535504797 BAM aligned CPTAC3 fda8e552-9732-45cc-8c81-51ea6dceab92 c68d57c401181279f045ca0f33f137ac { 'aliquot_tag': 'ALQ_388491c6', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -907,12 +1306,12 @@ C3L-00080.miRNA-Seq.T C3L-00080 LUAD miRNA-Seq tumor CPT0001060164 181113_UNC31- C3L-00080.miRNA-Seq.T.hg38 C3L-00080 LUAD miRNA-Seq tumor CPT0001060164 d06c2bcf-456a-4837-abe8-82c5ac7813cb_mirnaseq_gdc_realn.bam 307074111 BAM harmonized CPTAC3 fd9fc68c-db05-4978-914c-6b983431f86e 0c25309ef384afd393fff6e6f0cda22f { 'aliquot_tag': 'ALQ_6105a871', 'gdc_sample_type': 'Primary Tumor' } C3L-00080.RNA-Seq.chimeric.A.hg38 C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 c30f726b-4a8f-4bcc-918f-84cdf88755e1.rna_seq.chimeric.gdc_realn.bam 47170794 BAM chimeric harmonized CPTAC3 320a1fa4-0064-4823-a65e-a05e9effa70e 2f23ca9eaa4bd31d532b54314298ab86 { 'aliquot_tag': 'ALQ_e5f32d5c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00080.RNA-Seq.chimeric.T.hg38 C3L-00080 LUAD RNA-Seq tumor CPT0001060164 3042f983-b8b0-4808-a25e-289a777664e6.rna_seq.chimeric.gdc_realn.bam 101277625 BAM chimeric harmonized CPTAC3 626bb6d6-0208-4320-862d-c7f3255659c9 274e0088acbbd88c247997d9c966d7d3 { 'aliquot_tag': 'ALQ_6105a871', 'gdc_sample_type': 'Primary Tumor' } -C3L-00080.RNA-Seq.genomic.A.hg38 C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 c30f726b-4a8f-4bcc-918f-84cdf88755e1.rna_seq.genomic.gdc_realn.bam 7880695095 BAM genomic harmonized CPTAC3 51404694-4372-4719-a176-da96eedf646b 5f9a08e9e64e342fcc9b12e146a1cbf5 { 'aliquot_tag': 'ALQ_e5f32d5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00080.RNA-Seq.genomic.T.hg38 C3L-00080 LUAD RNA-Seq tumor CPT0001060164 3042f983-b8b0-4808-a25e-289a777664e6.rna_seq.genomic.gdc_realn.bam 8365092954 BAM genomic harmonized CPTAC3 705e8805-dba9-46f5-9cce-b5646a0fa03b f4ce533c16f1dbcd799a068713227b36 { 'aliquot_tag': 'ALQ_6105a871', 'gdc_sample_type': 'Primary Tumor' } -C3L-00080.RNA-Seq.R1_L003.A C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 171215_UNC32-K00270_0072_AHN3THBBXX_ATTCCT_S8_L003_R1_001.fastq.gz 3788888230 FASTQ R1_L003 unaligned CPTAC3 e3b3eb09-d63a-405e-a75c-3f702efa99b5 8adc24bb5a64f3f5cca5a4087d7412b6 { 'aliquot_tag': 'ALQ_e5f32d5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00080.RNA-Seq.R1_L003.T C3L-00080 LUAD RNA-Seq tumor CPT0001060164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTTTCG_S9_L003_R1_001.fastq.gz 3470721198 FASTQ R1_L003 unaligned CPTAC3 5f907873-df4e-4a39-8a9d-93ac9dc6b092 94d499e0aab28e26d1086b484ac95020 { 'aliquot_tag': 'ALQ_6105a871', 'gdc_sample_type': 'Primary Tumor' } -C3L-00080.RNA-Seq.R2_L003.A C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 171215_UNC32-K00270_0072_AHN3THBBXX_ATTCCT_S8_L003_R2_001.fastq.gz 3994850528 FASTQ R2_L003 unaligned CPTAC3 24c67435-65d7-40b6-9797-98c2cff545a8 9a10a3a59aa4d54b7f007e8703f378f4 { 'aliquot_tag': 'ALQ_e5f32d5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00080.RNA-Seq.R2_L003.T C3L-00080 LUAD RNA-Seq tumor CPT0001060164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTTTCG_S9_L003_R2_001.fastq.gz 3858897033 FASTQ R2_L003 unaligned CPTAC3 8e3ee723-f497-403e-bdef-b8740041fcb2 f7c97492250d184db634ccfdb63368f0 { 'aliquot_tag': 'ALQ_6105a871', 'gdc_sample_type': 'Primary Tumor' } +C3L-00080.RNA-Seq.genomic.A.hg38 C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 c30f726b-4a8f-4bcc-918f-84cdf88755e1.rna_seq.genomic.gdc_realn.bam 7880695095 BAM genomic harmonized CPTAC3 0862eb68-daeb-4f61-8eb2-b41a8a99d0ef 5f9a08e9e64e342fcc9b12e146a1cbf5 { 'aliquot_tag': 'ALQ_e5f32d5c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00080.RNA-Seq.genomic.T.hg38 C3L-00080 LUAD RNA-Seq tumor CPT0001060164 3042f983-b8b0-4808-a25e-289a777664e6.rna_seq.genomic.gdc_realn.bam 8365092954 BAM genomic harmonized CPTAC3 5cb3859a-bcd6-42f9-b243-c4987a9d5425 f4ce533c16f1dbcd799a068713227b36 { 'aliquot_tag': 'ALQ_6105a871', 'gdc_sample_type': 'Primary Tumor' } +C3L-00080.RNA-Seq.R1_L003.A C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 171215_UNC32-K00270_0072_AHN3THBBXX_ATTCCT_S8_L003_R1_001.fastq.gz 3788888230 FASTQ R1_L003 unaligned CPTAC3 e3b3eb09-d63a-405e-a75c-3f702efa99b5 8adc24bb5a64f3f5cca5a4087d7412b6 { 'aliquot_tag': 'ALQ_e5f32d5c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-00080.RNA-Seq.R1_L003.T C3L-00080 LUAD RNA-Seq tumor CPT0001060164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTTTCG_S9_L003_R1_001.fastq.gz 3470721198 FASTQ R1_L003 unaligned CPTAC3 5f907873-df4e-4a39-8a9d-93ac9dc6b092 94d499e0aab28e26d1086b484ac95020 { 'aliquot_tag': 'ALQ_6105a871', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00080.RNA-Seq.R2_L003.A C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 171215_UNC32-K00270_0072_AHN3THBBXX_ATTCCT_S8_L003_R2_001.fastq.gz 3994850528 FASTQ R2_L003 unaligned CPTAC3 24c67435-65d7-40b6-9797-98c2cff545a8 9a10a3a59aa4d54b7f007e8703f378f4 { 'aliquot_tag': 'ALQ_e5f32d5c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-00080.RNA-Seq.R2_L003.T C3L-00080 LUAD RNA-Seq tumor CPT0001060164 170802_UNC31-K00269_0072_AHK3GVBBXX_GTTTCG_S9_L003_R2_001.fastq.gz 3858897033 FASTQ R2_L003 unaligned CPTAC3 8e3ee723-f497-403e-bdef-b8740041fcb2 f7c97492250d184db634ccfdb63368f0 { 'aliquot_tag': 'ALQ_6105a871', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-00080.RNA-Seq.transcriptome.A.hg38 C3L-00080 LUAD RNA-Seq tissue_normal CPT0001070006 c30f726b-4a8f-4bcc-918f-84cdf88755e1.rna_seq.transcriptome.gdc_realn.bam 9682153173 BAM transcriptome harmonized CPTAC3 a9798e6c-60e3-4eda-8b64-705e4662a6e5 361a906340bbba92d9614aa8909eb8be { 'aliquot_tag': 'ALQ_e5f32d5c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00080.RNA-Seq.transcriptome.T.hg38 C3L-00080 LUAD RNA-Seq tumor CPT0001060164 3042f983-b8b0-4808-a25e-289a777664e6.rna_seq.transcriptome.gdc_realn.bam 8178279137 BAM transcriptome harmonized CPTAC3 52ddd213-2ad9-452f-b7c2-4065c106c94c 6cb015c120ed9e368216fff57ae33368 { 'aliquot_tag': 'ALQ_6105a871', 'gdc_sample_type': 'Primary Tumor' } C3L-00080.WGS.A C3L-00080 LUAD WGS tissue_normal CPT0001070009 CPT0001070009.WholeGenome.RP-1303.bam 81206900517 BAM aligned CPTAC3 081a8d4d-792e-4a5b-af7a-8bd1d2e0963d afaea3669492bd7548772a2257c2a672 { 'aliquot_tag': 'ALQ_754c30cd', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -937,12 +1336,12 @@ C3L-00081.miRNA-Seq.T C3L-00081 LSCC miRNA-Seq tumor CPT0001020164 181119_UNC31- C3L-00081.miRNA-Seq.T.hg38 C3L-00081 LSCC miRNA-Seq tumor CPT0001020164 fab1e2b2-6cdf-4c57-bcb5-a471707cded4_mirnaseq_gdc_realn.bam 264975107 BAM harmonized CPTAC3 4e533072-0f76-49f6-a9a7-35cc549f3b2a 7c7f0b5382e9b99f5c374dad5ad398c4 { 'aliquot_tag': 'ALQ_94850eb1', 'gdc_sample_type': 'Primary Tumor' } C3L-00081.RNA-Seq.chimeric.A.hg38 C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 d84af806-b1fd-412f-b9d3-38933cc6212c.rna_seq.chimeric.gdc_realn.bam 40154720 BAM chimeric harmonized CPTAC3 e2497a1b-9ce0-437a-af72-5931bf3365a0 fd59a502b286a5cc1ed424af706a0e0d { 'aliquot_tag': 'ALQ_80cc960d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00081.RNA-Seq.chimeric.T.hg38 C3L-00081 LSCC RNA-Seq tumor CPT0001020164 fa46d4bc-7aa8-4868-938b-404fc2d30a1a.rna_seq.chimeric.gdc_realn.bam 90588319 BAM chimeric harmonized CPTAC3 fef44227-e37d-4475-9f7e-9b9d1f67a959 1eec1a997cfd8db67d2cf92e8d9af339 { 'aliquot_tag': 'ALQ_94850eb1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00081.RNA-Seq.genomic.A.hg38 C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 d84af806-b1fd-412f-b9d3-38933cc6212c.rna_seq.genomic.gdc_realn.bam 7538796519 BAM genomic harmonized CPTAC3 41964a3a-043c-4901-bef3-a08bfeab87c2 9ae288caa90b448ca5f4f9078b6b3791 { 'aliquot_tag': 'ALQ_80cc960d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00081.RNA-Seq.genomic.T.hg38 C3L-00081 LSCC RNA-Seq tumor CPT0001020164 fa46d4bc-7aa8-4868-938b-404fc2d30a1a.rna_seq.genomic.gdc_realn.bam 8439583099 BAM genomic harmonized CPTAC3 098b47e5-ae8b-413e-a18a-8dbef046b0e7 59f694ee679475388d00345d8bb38d31 { 'aliquot_tag': 'ALQ_94850eb1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00081.RNA-Seq.R1_L003.T C3L-00081 LSCC RNA-Seq tumor CPT0001020164 170802_UNC31-K00269_0072_AHK3GVBBXX_CGTACG_S11_L003_R1_001.fastq.gz 3939456591 FASTQ R1_L003 unaligned CPTAC3 3421ad64-9741-4c1a-8566-1ed87be793ed 9208224ed41c98ee20b39ca69eaaf50b { 'aliquot_tag': 'ALQ_94850eb1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00081.RNA-Seq.R1_L005.A C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 180516_UNC32-K00270_0095_AHTY5LBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 3654893099 FASTQ R1_L005 unaligned CPTAC3 c6af85e7-26e8-4b47-b8af-dde2bec71986 fa7b748c426c7c571a2b2680d9a99a90 { 'aliquot_tag': 'ALQ_80cc960d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00081.RNA-Seq.R2_L003.T C3L-00081 LSCC RNA-Seq tumor CPT0001020164 170802_UNC31-K00269_0072_AHK3GVBBXX_CGTACG_S11_L003_R2_001.fastq.gz 4356640891 FASTQ R2_L003 unaligned CPTAC3 5bbe2459-83d0-4ec4-af3d-349c07dd3ef6 fd7b61a3b8f36f69582676b21d4b1df6 { 'aliquot_tag': 'ALQ_94850eb1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00081.RNA-Seq.R2_L005.A C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 180516_UNC32-K00270_0095_AHTY5LBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 3975945919 FASTQ R2_L005 unaligned CPTAC3 baa8c044-0465-4621-ad86-59a7fc812b9f 32105850f51c90749cdfe503156e32d7 { 'aliquot_tag': 'ALQ_80cc960d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00081.RNA-Seq.genomic.A.hg38 C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 d84af806-b1fd-412f-b9d3-38933cc6212c.rna_seq.genomic.gdc_realn.bam 7538796519 BAM genomic harmonized CPTAC3 dc3b683c-5afe-48e8-bc0d-2db0168438b1 9ae288caa90b448ca5f4f9078b6b3791 { 'aliquot_tag': 'ALQ_80cc960d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00081.RNA-Seq.genomic.T.hg38 C3L-00081 LSCC RNA-Seq tumor CPT0001020164 fa46d4bc-7aa8-4868-938b-404fc2d30a1a.rna_seq.genomic.gdc_realn.bam 8439583099 BAM genomic harmonized CPTAC3 07efac59-ec65-41cc-91de-de2db3e51c95 59f694ee679475388d00345d8bb38d31 { 'aliquot_tag': 'ALQ_94850eb1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00081.RNA-Seq.R1_L003.T C3L-00081 LSCC RNA-Seq tumor CPT0001020164 170802_UNC31-K00269_0072_AHK3GVBBXX_CGTACG_S11_L003_R1_001.fastq.gz 3939456591 FASTQ R1_L003 unaligned CPTAC3 3421ad64-9741-4c1a-8566-1ed87be793ed 9208224ed41c98ee20b39ca69eaaf50b { 'aliquot_tag': 'ALQ_94850eb1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00081.RNA-Seq.R1_L005.A C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 180516_UNC32-K00270_0095_AHTY5LBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 3654893099 FASTQ R1_L005 unaligned CPTAC3 c6af85e7-26e8-4b47-b8af-dde2bec71986 fa7b748c426c7c571a2b2680d9a99a90 { 'aliquot_tag': 'ALQ_80cc960d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00081.RNA-Seq.R2_L003.T C3L-00081 LSCC RNA-Seq tumor CPT0001020164 170802_UNC31-K00269_0072_AHK3GVBBXX_CGTACG_S11_L003_R2_001.fastq.gz 4356640891 FASTQ R2_L003 unaligned CPTAC3 5bbe2459-83d0-4ec4-af3d-349c07dd3ef6 fd7b61a3b8f36f69582676b21d4b1df6 { 'aliquot_tag': 'ALQ_94850eb1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00081.RNA-Seq.R2_L005.A C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 180516_UNC32-K00270_0095_AHTY5LBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 3975945919 FASTQ R2_L005 unaligned CPTAC3 baa8c044-0465-4621-ad86-59a7fc812b9f 32105850f51c90749cdfe503156e32d7 { 'aliquot_tag': 'ALQ_80cc960d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-00081.RNA-Seq.transcriptome.A.hg38 C3L-00081 LSCC RNA-Seq tissue_normal CPT0001030009 d84af806-b1fd-412f-b9d3-38933cc6212c.rna_seq.transcriptome.gdc_realn.bam 9853763645 BAM transcriptome harmonized CPTAC3 0e640400-21fb-421d-895e-29167dae72ca 3315fcafdff0a40df0dd5cc65bfe51f0 { 'aliquot_tag': 'ALQ_80cc960d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00081.RNA-Seq.transcriptome.T.hg38 C3L-00081 LSCC RNA-Seq tumor CPT0001020164 fa46d4bc-7aa8-4868-938b-404fc2d30a1a.rna_seq.transcriptome.gdc_realn.bam 11092790707 BAM transcriptome harmonized CPTAC3 ebf3c06f-092e-465e-9f47-5a20dc208640 11fe9019b59a6bcfe595434af0db72fb { 'aliquot_tag': 'ALQ_94850eb1', 'gdc_sample_type': 'Primary Tumor' } C3L-00081.WGS.A C3L-00081 LSCC WGS tissue_normal CPT0001030006 CPT0001030006.WholeGenome.RP-1303.bam 62530201240 BAM aligned CPTAC3 fd9c0561-e0b3-40c7-9adc-47a733e3e602 f2c086f7bf42366b2592b7a3490f2583 { 'aliquot_tag': 'ALQ_10738b9c', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -967,12 +1366,12 @@ C3L-00083.miRNA-Seq.T C3L-00083 LUAD miRNA-Seq tumor CPT0091860006 180828_UNC32- C3L-00083.miRNA-Seq.T.hg38 C3L-00083 LUAD miRNA-Seq tumor CPT0091860006 af1a7521-0fcd-4b95-a4ac-eb5250f78b5f_mirnaseq_gdc_realn.bam 234458225 BAM harmonized CPTAC3 862b8f68-36c9-4926-babc-5f3fcdc0f2e7 97a09bf11ff240f4e9074f6b9a417e02 { 'aliquot_tag': 'ALQ_2b8f9daa', 'gdc_sample_type': 'Primary Tumor' } C3L-00083.RNA-Seq.chimeric.A.hg38 C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 4ce575bc-77b0-4390-b27c-6f60ebd099a9.rna_seq.chimeric.gdc_realn.bam 40485528 BAM chimeric harmonized CPTAC3 8369df40-4495-4385-adf6-5b6b9625d6af eed157666e65803d583cb5970cf395ef { 'aliquot_tag': 'ALQ_16efb41a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00083.RNA-Seq.chimeric.T.hg38 C3L-00083 LUAD RNA-Seq tumor CPT0091860006 a22f3311-3ca0-4a22-986a-63b802fa8683.rna_seq.chimeric.gdc_realn.bam 25066864 BAM chimeric harmonized CPTAC3 701fda35-1f6a-4b46-a55e-06fe71be9ac5 9fde023653449ca754e945e7a8af0221 { 'aliquot_tag': 'ALQ_2b8f9daa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00083.RNA-Seq.genomic.A.hg38 C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 4ce575bc-77b0-4390-b27c-6f60ebd099a9.rna_seq.genomic.gdc_realn.bam 6926438730 BAM genomic harmonized CPTAC3 72e9c5ea-cadb-482b-b091-3107e5d78d12 dcbb5f05e37d03e184c24d91f2b13c9d { 'aliquot_tag': 'ALQ_16efb41a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00083.RNA-Seq.genomic.A.hg38 C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 4ce575bc-77b0-4390-b27c-6f60ebd099a9.rna_seq.genomic.gdc_realn.bam 6926438730 BAM genomic harmonized CPTAC3 5272ec5e-96fb-496d-9218-6057ccd7003f dcbb5f05e37d03e184c24d91f2b13c9d { 'aliquot_tag': 'ALQ_16efb41a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00083.RNA-Seq.genomic.T.hg38 C3L-00083 LUAD RNA-Seq tumor CPT0091860006 a22f3311-3ca0-4a22-986a-63b802fa8683.rna_seq.genomic.gdc_realn.bam 9498180816 BAM genomic harmonized CPTAC3 2c30bab8-1ecd-4fbc-8469-adfb8244b54e 76d8c783b8b3f6f8634817f294c33d11 { 'aliquot_tag': 'ALQ_2b8f9daa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00083.RNA-Seq.R1_L006.A C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGAAA_S23_L006_R1_001.fastq.gz 3073545641 FASTQ R1_L006 unaligned CPTAC3 547747fd-bc4e-48f7-9b6d-cbd97b09c44a 98aeed38e3184adcbc4915e5e73b18cf { 'aliquot_tag': 'ALQ_16efb41a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00083.RNA-Seq.R1_L008.T C3L-00083 LUAD RNA-Seq tumor CPT0091860006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L008_R1_001.fastq.gz 3238569706 FASTQ R1_L008 unaligned CPTAC3 2c84bd2a-e9a9-4217-add6-56698c1c2a4f ac0a4d00d8b2a5ef0948a7341628bb59 { 'aliquot_tag': 'ALQ_2b8f9daa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00083.RNA-Seq.R2_L006.A C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGAAA_S23_L006_R2_001.fastq.gz 3050945016 FASTQ R2_L006 unaligned CPTAC3 9eb82bcc-2f71-42bd-b81c-dcce5574e105 dcb98f613af8764bf818240691a868f5 { 'aliquot_tag': 'ALQ_16efb41a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00083.RNA-Seq.R2_L008.T C3L-00083 LUAD RNA-Seq tumor CPT0091860006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L008_R2_001.fastq.gz 3504350542 FASTQ R2_L008 unaligned CPTAC3 869eced6-9373-4cf5-92f9-a3dc8cad7110 b25f8190cc6991bac89871d02ced1794 { 'aliquot_tag': 'ALQ_2b8f9daa', 'gdc_sample_type': 'Primary Tumor' } +C3L-00083.RNA-Seq.R1_L006.A C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGAAA_S23_L006_R1_001.fastq.gz 3073545641 FASTQ R1_L006 unaligned CPTAC3 547747fd-bc4e-48f7-9b6d-cbd97b09c44a 98aeed38e3184adcbc4915e5e73b18cf { 'aliquot_tag': 'ALQ_16efb41a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-00083.RNA-Seq.R1_L008.T C3L-00083 LUAD RNA-Seq tumor CPT0091860006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L008_R1_001.fastq.gz 3238569706 FASTQ R1_L008 unaligned CPTAC3 2c84bd2a-e9a9-4217-add6-56698c1c2a4f ac0a4d00d8b2a5ef0948a7341628bb59 { 'aliquot_tag': 'ALQ_2b8f9daa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00083.RNA-Seq.R2_L006.A C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGAAA_S23_L006_R2_001.fastq.gz 3050945016 FASTQ R2_L006 unaligned CPTAC3 9eb82bcc-2f71-42bd-b81c-dcce5574e105 dcb98f613af8764bf818240691a868f5 { 'aliquot_tag': 'ALQ_16efb41a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-00083.RNA-Seq.R2_L008.T C3L-00083 LUAD RNA-Seq tumor CPT0091860006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L008_R2_001.fastq.gz 3504350542 FASTQ R2_L008 unaligned CPTAC3 869eced6-9373-4cf5-92f9-a3dc8cad7110 b25f8190cc6991bac89871d02ced1794 { 'aliquot_tag': 'ALQ_2b8f9daa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-00083.RNA-Seq.transcriptome.A.hg38 C3L-00083 LUAD RNA-Seq tissue_normal CPT0091870006 4ce575bc-77b0-4390-b27c-6f60ebd099a9.rna_seq.transcriptome.gdc_realn.bam 6789029029 BAM transcriptome harmonized CPTAC3 bfdce880-dd1c-4447-bcac-60f622493b6c e2fbb2f0d8d49a3cf5b0d688e44f8436 { 'aliquot_tag': 'ALQ_16efb41a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00083.RNA-Seq.transcriptome.T.hg38 C3L-00083 LUAD RNA-Seq tumor CPT0091860006 a22f3311-3ca0-4a22-986a-63b802fa8683.rna_seq.transcriptome.gdc_realn.bam 6992588266 BAM transcriptome harmonized CPTAC3 53f5a336-e4fe-4de8-9cbf-5d04413a9b5f 0b2f92a28043dd370a80f1f73d9037c7 { 'aliquot_tag': 'ALQ_2b8f9daa', 'gdc_sample_type': 'Primary Tumor' } C3L-00083.WGS.A C3L-00083 LUAD WGS tissue_normal CPT0091870009 CPT0091870009.WholeGenome.RP-1303.bam 59141030706 BAM aligned CPTAC3 08a47d22-0245-4c34-9fd1-aaf65df2c403 e117a98905fad9e3c1f62fa77b8c537c { 'aliquot_tag': 'ALQ_8650a98b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -991,11 +1390,11 @@ C3L-00084.MethArray.Green.T C3L-00084 UCEC Methylation Array tumor CPT0000820005 C3L-00084.MethArray.Red.T C3L-00084 UCEC Methylation Array tumor CPT0000820005 201557560056_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 c1a8f4a6-4acd-45da-a196-37bedc53fe81 f306ecef1374a1a6e7e997a3913911be { 'aliquot_tag': 'ALQ_fe3e7a4f', 'gdc_sample_type': 'Primary Tumor' } C3L-00084.miRNA-Seq.T C3L-00084 UCEC miRNA-Seq tumor CPT0000820008 181012_UNC32-K00270_0124_AH223CBBXY_ATCACG_S22_L002_R1_001.unaln.bam 193779151 BAM unaligned CPTAC3 ad107ad9-5bf9-4aec-a8b8-2ac68a859bcf 8909ecfb466c93ff7ccaf2e15988f719 { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor' } C3L-00084.miRNA-Seq.T.hg38 C3L-00084 UCEC miRNA-Seq tumor CPT0000820008 a8d6311a-0d73-429a-8e65-1c40116892a4_mirnaseq_gdc_realn.bam 213551415 BAM harmonized CPTAC3 11d6da3d-c5f6-4b04-b79e-89a0668e5ea1 cf53074e48692389034d99b3aa11818b { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00084.RNA-Seq.chimeric.T.hg38 C3L-00084 UCEC RNA-Seq tumor CPT0000820008 79a802dd-cbe0-478d-b695-3ebbf361b73b.rna_seq.chimeric.gdc_realn.bam 146823455 BAM chimeric harmonized CPTAC3 2491bbc3-9c69-48b3-b22f-f28b03ffe3dd 86dd7334acfa33173e011d54a4fb04cf { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00084.RNA-Seq.genomic.T.hg38 C3L-00084 UCEC RNA-Seq tumor CPT0000820008 79a802dd-cbe0-478d-b695-3ebbf361b73b.rna_seq.genomic.gdc_realn.bam 7117949132 BAM genomic harmonized CPTAC3 3b7d4638-9bc4-41d0-bc82-781d0bbc6c78 a7bde692e4bc5a1dda7e2828ee73ca86 { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00084.RNA-Seq.R1_L002.T C3L-00084 UCEC RNA-Seq tumor CPT0000820008 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L002_R1_001.fastq.gz 3463534382 FASTQ R1_L002 unaligned CPTAC3 b0a7cdf2-2ad8-4442-91b0-548ea4975554 1bb222621c073fde3b7cabdd8e4ae0b0 { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00084.RNA-Seq.R2_L002.T C3L-00084 UCEC RNA-Seq tumor CPT0000820008 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L002_R2_001.fastq.gz 3578027014 FASTQ R2_L002 unaligned CPTAC3 c83987a5-1c13-4af4-b46c-218fe5f60c34 5e2de48f0ee1fee78ae57f1362ba0151 { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00084.RNA-Seq.transcriptome.T.hg38 C3L-00084 UCEC RNA-Seq tumor CPT0000820008 79a802dd-cbe0-478d-b695-3ebbf361b73b.rna_seq.transcriptome.gdc_realn.bam 7158728698 BAM transcriptome harmonized CPTAC3 f3d33471-ddae-4dec-8dcb-0eac4a94c57d 3f39d673e6d79642e1d01cd0d53e76e2 { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00084.RNA-Seq.chimeric.T.hg38 C3L-00084 UCEC RNA-Seq tumor CPT0000820008 12bb3339-5a04-4675-8ca8-3f4eda2b10db.rna_seq.chimeric.gdc_realn.bam 146783115 BAM chimeric harmonized CPTAC3 c0aa1264-34f9-498e-a229-04dec8566253 17c9ae568082a91a4f16bc0e1bbdb562 { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00084.RNA-Seq.genomic.T.hg38 C3L-00084 UCEC RNA-Seq tumor CPT0000820008 12bb3339-5a04-4675-8ca8-3f4eda2b10db.rna_seq.genomic.gdc_realn.bam 7118566916 BAM genomic harmonized CPTAC3 7ff211fd-8e48-4222-b258-7fd4f74697c6 e2f20f42b0ef00544e783b0eefcb6db0 { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00084.RNA-Seq.R1_L002.T C3L-00084 UCEC RNA-Seq tumor CPT0000820008 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L002_R1_001.fastq.gz 3463534382 FASTQ R1_L002 unaligned CPTAC3 b0a7cdf2-2ad8-4442-91b0-548ea4975554 1bb222621c073fde3b7cabdd8e4ae0b0 { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00084.RNA-Seq.R2_L002.T C3L-00084 UCEC RNA-Seq tumor CPT0000820008 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L002_R2_001.fastq.gz 3578027014 FASTQ R2_L002 unaligned CPTAC3 c83987a5-1c13-4af4-b46c-218fe5f60c34 5e2de48f0ee1fee78ae57f1362ba0151 { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00084.RNA-Seq.transcriptome.T.hg38 C3L-00084 UCEC RNA-Seq tumor CPT0000820008 12bb3339-5a04-4675-8ca8-3f4eda2b10db.rna_seq.transcriptome.gdc_realn.bam 8149947669 BAM transcriptome harmonized CPTAC3 3d745cb1-7b59-4cc8-85be-fd6d3fdb4232 26133fdbc4dad796dca3a1a771802bb7 { 'aliquot_tag': 'ALQ_808f06f2', 'gdc_sample_type': 'Primary Tumor' } C3L-00084.WGS.N C3L-00084 UCEC WGS blood_normal CPT0003880002 CPT0003880002.WholeGenome.RP-1303.bam 139304445976 BAM aligned CPTAC3 9986965d-3fb8-4479-be4b-cc565180e4b9 ee3b17375e9316d25c743932abe4587e { 'aliquot_tag': 'ALQ_1b02edd0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00084.WGS.N.hg38 C3L-00084 UCEC WGS blood_normal CPT0003880002 b0c06553-0088-41fd-a0de-fecc9bb6574a_gdc_realn.bam 203220813830 BAM harmonized CPTAC3 edc0e018-cb28-4bf3-b1ff-39490924e401 c953daa5c444b419c7c706e2bb6d1561 { 'aliquot_tag': 'ALQ_1b02edd0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00084.WGS.T C3L-00084 UCEC WGS tumor CPT0000820005 CPT0000820005.WholeGenome.RP-1303.bam 139008147447 BAM aligned CPTAC3 24ff3308-16da-4ba9-b05f-7b2d475e09bc 91f50522fa02805ac302ade888740e53 { 'aliquot_tag': 'ALQ_fe3e7a4f', 'gdc_sample_type': 'Primary Tumor' } @@ -1008,11 +1407,11 @@ C3L-00086.MethArray.Green.T C3L-00086 UCEC Methylation Array tumor CPT0092460009 C3L-00086.MethArray.Red.T C3L-00086 UCEC Methylation Array tumor CPT0092460009 202234380064_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 45573c0d-dcf2-4ccc-a349-8eccefabcde2 28aeec7520ee22ef04551f8abc1f1e7c { 'aliquot_tag': 'ALQ_fd1a5add', 'gdc_sample_type': 'Primary Tumor' } C3L-00086.miRNA-Seq.T C3L-00086 UCEC miRNA-Seq tumor CPT0092460006 180724_UNC32-K00270_0106_BHWK3MBBXX_CATTTT_S11_L007_R1_001.unaln.bam 225683753 BAM unaligned CPTAC3 f65c15fb-bfbd-46dc-8419-a358ccd647bf de9a591aeab42b85dfe67131a67504b6 { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor' } C3L-00086.miRNA-Seq.T.hg38 C3L-00086 UCEC miRNA-Seq tumor CPT0092460006 413bfaf5-6d1f-4a6b-8963-1225aff596b8_mirnaseq_gdc_realn.bam 244045794 BAM harmonized CPTAC3 e4b723b7-48a5-4d16-983e-381d38aab3be 7274089c3619eb0fc93ee9d89fc4d503 { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00086.RNA-Seq.chimeric.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 0d4a5c65-d805-401f-83a9-cffdf559d1ba.rna_seq.chimeric.gdc_realn.bam 43485423 BAM chimeric harmonized CPTAC3 4a0b12f1-7e91-4a2e-80c8-36a1cf842ef0 d4ffb77367ed2dad688d62db2e544d52 { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00086.RNA-Seq.genomic.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 0d4a5c65-d805-401f-83a9-cffdf559d1ba.rna_seq.genomic.gdc_realn.bam 9339699429 BAM genomic harmonized CPTAC3 fd5facea-7317-4f82-8cc1-bc6c953d1650 c5771b24ebb8fb6f8fe935fe605b31bd { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00086.RNA-Seq.R1_L005.T C3L-00086 UCEC RNA-Seq tumor CPT0092460006 171129_UNC32-K00270_0066_AHM25VBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4232488401 FASTQ R1_L005 unaligned CPTAC3 22637e03-59ca-4f1d-9b27-8fd59c36a403 f34884fc23fb7a4bf6044b725adc9cfa { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00086.RNA-Seq.R2_L005.T C3L-00086 UCEC RNA-Seq tumor CPT0092460006 171129_UNC32-K00270_0066_AHM25VBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4836114269 FASTQ R2_L005 unaligned CPTAC3 a7f4b09e-21e5-4cff-b9ca-65af1932bf52 ac60929b8028f142898547c42ee3c5d8 { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00086.RNA-Seq.transcriptome.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 0d4a5c65-d805-401f-83a9-cffdf559d1ba.rna_seq.transcriptome.gdc_realn.bam 9611047801 BAM transcriptome harmonized CPTAC3 ec120055-a41c-4c18-b2fb-b88db279c45d 0997cbc5bcb85c720228abc35a1f6cfa { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00086.RNA-Seq.chimeric.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 8d417705-afcf-477b-965e-cd301e46a01c.rna_seq.chimeric.gdc_realn.bam 43467899 BAM chimeric harmonized CPTAC3 8eea6359-4603-41a5-8091-25d7f1a08178 af9ba6fb8aa490410f00e324b5b8d875 { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00086.RNA-Seq.genomic.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 8d417705-afcf-477b-965e-cd301e46a01c.rna_seq.genomic.gdc_realn.bam 9340732260 BAM genomic harmonized CPTAC3 db6c9174-014c-41a0-bd95-8b8ca31f5b11 cf7c34261c5856d3240dd33cdacf0a2d { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00086.RNA-Seq.R1_L005.T C3L-00086 UCEC RNA-Seq tumor CPT0092460006 171129_UNC32-K00270_0066_AHM25VBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4232488401 FASTQ R1_L005 unaligned CPTAC3 22637e03-59ca-4f1d-9b27-8fd59c36a403 f34884fc23fb7a4bf6044b725adc9cfa { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00086.RNA-Seq.R2_L005.T C3L-00086 UCEC RNA-Seq tumor CPT0092460006 171129_UNC32-K00270_0066_AHM25VBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4836114269 FASTQ R2_L005 unaligned CPTAC3 a7f4b09e-21e5-4cff-b9ca-65af1932bf52 ac60929b8028f142898547c42ee3c5d8 { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-00086.RNA-Seq.transcriptome.T.hg38 C3L-00086 UCEC RNA-Seq tumor CPT0092460006 8d417705-afcf-477b-965e-cd301e46a01c.rna_seq.transcriptome.gdc_realn.bam 10967522496 BAM transcriptome harmonized CPTAC3 a9e406ba-64d5-4463-9f2a-fef78f742a2b 9badc039019bf5abfdf9ca130be648c4 { 'aliquot_tag': 'ALQ_6da5474c', 'gdc_sample_type': 'Primary Tumor' } C3L-00086.WGS.N C3L-00086 UCEC WGS blood_normal CPT0093790002 CPT0093790002.WholeGenome.RP-1303.bam 62749203339 BAM aligned CPTAC3 8967dbcf-5b6b-4b39-a1d7-956b2af1546c 0353b6cc47c6174f3b9b0f0e53472194 { 'aliquot_tag': 'ALQ_c87b6d9e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00086.WGS.N.hg38 C3L-00086 UCEC WGS blood_normal CPT0093790002 8fc6c425-9cb5-49f4-86da-ea1361e7a692_wgs_gdc_realn.bam 92368698049 BAM harmonized CPTAC3 5001f32e-96d1-4307-82d2-5eea376f4c5c bffa423070913bc443f9907877aa7286 { 'aliquot_tag': 'ALQ_c87b6d9e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00086.WGS.T C3L-00086 UCEC WGS tumor CPT0092460009 CPT0092460009.WholeGenome.RP-1303.bam 62461041923 BAM aligned CPTAC3 d11bb755-9622-4be1-95f0-39d4fcc9574e b87abbed624c53ac9c555635e59e3114 { 'aliquot_tag': 'ALQ_fd1a5add', 'gdc_sample_type': 'Primary Tumor' } @@ -1031,12 +1430,12 @@ C3L-00088.miRNA-Seq.T C3L-00088 CCRCC miRNA-Seq tumor CPT0000870008 181113_UNC31 C3L-00088.miRNA-Seq.T.hg38 C3L-00088 CCRCC miRNA-Seq tumor CPT0000870008 2572e684-0287-4944-8956-cf2e2fd5b8c6_mirnaseq_gdc_realn.bam 323712065 BAM harmonized CPTAC3 2822be11-83da-4549-9745-a152a251b43f 41abe68bea7c6090842bc5ac081cee84 { 'aliquot_tag': 'ALQ_486f8982', 'gdc_sample_type': 'Primary Tumor' } C3L-00088.RNA-Seq.chimeric.A.hg38 C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 bad77ea5-49c8-4bbe-ae33-f403c978911e.rna_seq.chimeric.gdc_realn.bam 81939442 BAM chimeric harmonized CPTAC3 2586eaa0-1e9c-4dd5-a985-57589a9be41c 4d6e1d508962643c043297c7b75bfeb0 { 'aliquot_tag': 'ALQ_10e71ae4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00088.RNA-Seq.chimeric.T.hg38 C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 8d00622b-242e-4181-93e0-dac7ace53a14.rna_seq.chimeric.gdc_realn.bam 182374354 BAM chimeric harmonized CPTAC3 22bf8200-96fa-41b3-b972-7601b76da9fa a0533b217bb2469cc1f8363a386ad5ef { 'aliquot_tag': 'ALQ_486f8982', 'gdc_sample_type': 'Primary Tumor' } -C3L-00088.RNA-Seq.genomic.A.hg38 C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 bad77ea5-49c8-4bbe-ae33-f403c978911e.rna_seq.genomic.gdc_realn.bam 7380540524 BAM genomic harmonized CPTAC3 cd8462f1-25a1-475b-8c54-40dbce32b477 b9490d89eb15bffc9e419d1e910a5622 { 'aliquot_tag': 'ALQ_10e71ae4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00088.RNA-Seq.genomic.T.hg38 C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 8d00622b-242e-4181-93e0-dac7ace53a14.rna_seq.genomic.gdc_realn.bam 8489368431 BAM genomic harmonized CPTAC3 a4581457-6ee2-48f7-ba1d-7b80b019bd43 ce58aed9319414eb2108a57b4d36e7a5 { 'aliquot_tag': 'ALQ_486f8982', 'gdc_sample_type': 'Primary Tumor' } -C3L-00088.RNA-Seq.R1_L002.T C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4092217558 FASTQ R1_L002 unaligned CPTAC3 d4bd8d64-d651-43d3-b970-c91274b7526e ff6f617fd3d58d93b437b6e115f921c1 { 'aliquot_tag': 'ALQ_486f8982', 'gdc_sample_type': 'Primary Tumor' } -C3L-00088.RNA-Seq.R1_L007.A C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L007_R1_001.fastq.gz 3646165486 FASTQ R1_L007 unaligned CPTAC3 b48eaeba-39e6-408e-8e4a-6e003e5d945a 6fe1d01d2d7027b3f0844290b0d11d91 { 'aliquot_tag': 'ALQ_10e71ae4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00088.RNA-Seq.R2_L002.T C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4594406093 FASTQ R2_L002 unaligned CPTAC3 894c40bf-32d7-470e-9f19-36a62b7e32ba ceeaae5306e39f5c53ea0d85c07e8244 { 'aliquot_tag': 'ALQ_486f8982', 'gdc_sample_type': 'Primary Tumor' } -C3L-00088.RNA-Seq.R2_L007.A C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L007_R2_001.fastq.gz 3863267802 FASTQ R2_L007 unaligned CPTAC3 28922cc1-1760-4c38-9380-2e9ee349d1c4 d9fac49caf7018d47254cebe6f1a8334 { 'aliquot_tag': 'ALQ_10e71ae4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00088.RNA-Seq.genomic.A.hg38 C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 bad77ea5-49c8-4bbe-ae33-f403c978911e.rna_seq.genomic.gdc_realn.bam 7380540524 BAM genomic harmonized CPTAC3 2a90a484-cbbf-4b5a-b842-b4f5d0fe89cd b9490d89eb15bffc9e419d1e910a5622 { 'aliquot_tag': 'ALQ_10e71ae4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00088.RNA-Seq.genomic.T.hg38 C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 8d00622b-242e-4181-93e0-dac7ace53a14.rna_seq.genomic.gdc_realn.bam 8489368431 BAM genomic harmonized CPTAC3 d887e09e-3c02-4610-aaac-65fe046d72e2 ce58aed9319414eb2108a57b4d36e7a5 { 'aliquot_tag': 'ALQ_486f8982', 'gdc_sample_type': 'Primary Tumor' } +C3L-00088.RNA-Seq.R1_L002.T C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4092217558 FASTQ R1_L002 unaligned CPTAC3 d4bd8d64-d651-43d3-b970-c91274b7526e ff6f617fd3d58d93b437b6e115f921c1 { 'aliquot_tag': 'ALQ_486f8982', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00088.RNA-Seq.R1_L007.A C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L007_R1_001.fastq.gz 3646165486 FASTQ R1_L007 unaligned CPTAC3 b48eaeba-39e6-408e-8e4a-6e003e5d945a 6fe1d01d2d7027b3f0844290b0d11d91 { 'aliquot_tag': 'ALQ_10e71ae4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00088.RNA-Seq.R2_L002.T C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4594406093 FASTQ R2_L002 unaligned CPTAC3 894c40bf-32d7-470e-9f19-36a62b7e32ba ceeaae5306e39f5c53ea0d85c07e8244 { 'aliquot_tag': 'ALQ_486f8982', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00088.RNA-Seq.R2_L007.A C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L007_R2_001.fastq.gz 3863267802 FASTQ R2_L007 unaligned CPTAC3 28922cc1-1760-4c38-9380-2e9ee349d1c4 d9fac49caf7018d47254cebe6f1a8334 { 'aliquot_tag': 'ALQ_10e71ae4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-00088.RNA-Seq.transcriptome.A.hg38 C3L-00088 CCRCC RNA-Seq tissue_normal CPT0000890006 bad77ea5-49c8-4bbe-ae33-f403c978911e.rna_seq.transcriptome.gdc_realn.bam 8926608929 BAM transcriptome harmonized CPTAC3 3f852cab-27aa-43e3-8e0c-76239b6273f8 a7880e9462c979af4b7b389127679d85 { 'aliquot_tag': 'ALQ_10e71ae4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00088.RNA-Seq.transcriptome.T.hg38 C3L-00088 CCRCC RNA-Seq tumor CPT0000870008 8d00622b-242e-4181-93e0-dac7ace53a14.rna_seq.transcriptome.gdc_realn.bam 10544530884 BAM transcriptome harmonized CPTAC3 d0b2f263-874b-486c-a896-2e419c7c6c13 cc5751e021c3b936209c84dcf9a53ade { 'aliquot_tag': 'ALQ_486f8982', 'gdc_sample_type': 'Primary Tumor' } C3L-00088.WGS.A C3L-00088 CCRCC WGS tissue_normal CPT0000890009 CPT0000890009.WholeGenome.RP-1303.bam 52451092032 BAM aligned CPTAC3 7cbadd0f-b100-4301-99b8-a3ee39999bd5 4ec51dd79d390096839afbf7e8da6740 { 'aliquot_tag': 'ALQ_80580775', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1056,12 +1455,15 @@ C3L-00090.MethArray.Red.T C3L-00090 UCEC Methylation Array tumor CPT0001140005 2 C3L-00090.miRNA-Seq.T C3L-00090 UCEC miRNA-Seq tumor CPT0001140164 181113_UNC31-K00269_0164_AH23NNBBXY_TTAGGC_S27_L004_R1_001.unaln.bam 207505667 BAM unaligned CPTAC3 407b0ef1-2759-43ef-b9cf-39520e5122d3 c353ac360b9fc7a795d2ceab46d79092 { 'aliquot_tag': 'ALQ_d09928b4', 'gdc_sample_type': 'Primary Tumor' } C3L-00090.miRNA-Seq.T.hg38 C3L-00090 UCEC miRNA-Seq tumor CPT0001140164 021faa88-c804-417e-841e-63ff35e1db2b_mirnaseq_gdc_realn.bam 229454835 BAM harmonized CPTAC3 7b65a140-e65e-47ae-b105-e5490b5fec71 be003779e722a749254850b5d994f6da { 'aliquot_tag': 'ALQ_d09928b4', 'gdc_sample_type': 'Primary Tumor' } C3L-00090.RNA-Seq.chimeric.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0001140164 15e41740-5e37-41fc-a5c0-8e472ecdfce4.rna_seq.chimeric.gdc_realn.bam 85462736 BAM chimeric harmonized CPTAC3 ddbcd435-effe-43f2-a9fc-ec1029627905 84a6a7947a1bd0b2cdf77d1f9b2adbef { 'aliquot_tag': 'ALQ_d09928b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00090.RNA-Seq.genomic.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0001140164 15e41740-5e37-41fc-a5c0-8e472ecdfce4.rna_seq.genomic.gdc_realn.bam 8171374218 BAM genomic harmonized CPTAC3 9482e35c-854b-454c-a527-a2ba34b2e635 523d931f2706117af3460e52eaaeb0b9 { 'aliquot_tag': 'ALQ_d09928b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00090.RNA-Seq.R1_L003.T C3L-00090 UCEC RNA-Seq tumor CPT0001140164 170802_UNC31-K00269_0072_AHK3GVBBXX_GAGTGG_S10_L003_R1_001.fastq.gz 4036659089 FASTQ R1_L003 unaligned CPTAC3 8ce5618d-9ff6-40f9-aeea-8d8e1633ae38 cc0e201ebbf5750cb68dff7f5cf1fb53 { 'aliquot_tag': 'ALQ_d09928b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00090.RNA-Seq.R1_.T C3L-00090 UCEC RNA-Seq tumor CPT0349390001 20210729_P3_C4_WB7988-Plate3_S28_R1_001.fastq.gz 8350920829 FASTQ R1_ unaligned CPTAC3 fd744fdd-b608-466d-89c0-ac69b4ee336e b6ce9a3d2c0857b115de5bf37eb2e031 { 'aliquot_tag': 'ALQ_cc1b0868', 'gdc_sample_type': 'Primary Tumor' } -C3L-00090.RNA-Seq.R2_L003.T C3L-00090 UCEC RNA-Seq tumor CPT0001140164 170802_UNC31-K00269_0072_AHK3GVBBXX_GAGTGG_S10_L003_R2_001.fastq.gz 4410794510 FASTQ R2_L003 unaligned CPTAC3 06d3fd4a-a623-4146-8500-4f1f17235253 bccc1a8ca98b1774c680967caea81e18 { 'aliquot_tag': 'ALQ_d09928b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00090.RNA-Seq.R2_.T C3L-00090 UCEC RNA-Seq tumor CPT0349390001 20210729_P3_C4_WB7988-Plate3_S28_R2_001.fastq.gz 8717993624 FASTQ R2_ unaligned CPTAC3 9509ef16-9764-4c6d-8927-3cf065b2ec9c de00adb86b1f10ec8f0426a2ed4683e6 { 'aliquot_tag': 'ALQ_cc1b0868', 'gdc_sample_type': 'Primary Tumor' } +C3L-00090.RNA-Seq.chimeric.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0349390001 8e549471-eb49-4f0c-970b-1980853b9afc.rna_seq.chimeric.gdc_realn.bam 309612395 BAM chimeric harmonized CPTAC3 453a7729-afda-4e12-bac4-e1941e46b03e f629f9cbca77e7a0a3e88190d9ac4790 { 'aliquot_tag': 'ALQ_cc1b0868', 'gdc_sample_type': 'Primary Tumor' } +C3L-00090.RNA-Seq.genomic.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0001140164 15e41740-5e37-41fc-a5c0-8e472ecdfce4.rna_seq.genomic.gdc_realn.bam 8171374218 BAM genomic harmonized CPTAC3 20e50197-5136-4359-94f9-36a4bd5e3869 523d931f2706117af3460e52eaaeb0b9 { 'aliquot_tag': 'ALQ_d09928b4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00090.RNA-Seq.genomic.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0349390001 8e549471-eb49-4f0c-970b-1980853b9afc.rna_seq.genomic.gdc_realn.bam 14384877946 BAM genomic harmonized CPTAC3 417e9641-a165-4b26-a93e-38092e8a078f d18b4d43145e1df60a27066c64e44100 { 'aliquot_tag': 'ALQ_cc1b0868', 'gdc_sample_type': 'Primary Tumor' } +C3L-00090.RNA-Seq.R1_L003.T C3L-00090 UCEC RNA-Seq tumor CPT0001140164 170802_UNC31-K00269_0072_AHK3GVBBXX_GAGTGG_S10_L003_R1_001.fastq.gz 4036659089 FASTQ R1_L003 unaligned CPTAC3 8ce5618d-9ff6-40f9-aeea-8d8e1633ae38 cc0e201ebbf5750cb68dff7f5cf1fb53 { 'aliquot_tag': 'ALQ_d09928b4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00090.RNA-Seq.R2_L003.T C3L-00090 UCEC RNA-Seq tumor CPT0001140164 170802_UNC31-K00269_0072_AHK3GVBBXX_GAGTGG_S10_L003_R2_001.fastq.gz 4410794510 FASTQ R2_L003 unaligned CPTAC3 06d3fd4a-a623-4146-8500-4f1f17235253 bccc1a8ca98b1774c680967caea81e18 { 'aliquot_tag': 'ALQ_d09928b4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00090.RNA-Seq.T C3L-00090 UCEC RNA-Seq tumor CPT0349390001 20210729_P3_C4_WB7988-Plate3_S28_R1_001.fastq.gz 8350920829 FASTQ unaligned CPTAC3 fd744fdd-b608-466d-89c0-ac69b4ee336e b6ce9a3d2c0857b115de5bf37eb2e031 +C3L-00090.RNA-Seq.T C3L-00090 UCEC RNA-Seq tumor CPT0349390001 20210729_P3_C4_WB7988-Plate3_S28_R2_001.fastq.gz 8717993624 FASTQ unaligned CPTAC3 9509ef16-9764-4c6d-8927-3cf065b2ec9c de00adb86b1f10ec8f0426a2ed4683e6 C3L-00090.RNA-Seq.transcriptome.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0001140164 15e41740-5e37-41fc-a5c0-8e472ecdfce4.rna_seq.transcriptome.gdc_realn.bam 10890734409 BAM transcriptome harmonized CPTAC3 5749aacf-4c29-44af-9319-85592d90686e a5fa5bdd469706f7c02f9e4c686b729b { 'aliquot_tag': 'ALQ_d09928b4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00090.RNA-Seq.transcriptome.T.hg38 C3L-00090 UCEC RNA-Seq tumor CPT0349390001 8e549471-eb49-4f0c-970b-1980853b9afc.rna_seq.transcriptome.gdc_realn.bam 7560715137 BAM transcriptome harmonized CPTAC3 612946e1-cf35-436b-aad9-e11649bce532 f5a8b970ca342424afd9173cd76d3209 { 'aliquot_tag': 'ALQ_cc1b0868', 'gdc_sample_type': 'Primary Tumor' } C3L-00090.WGS.N C3L-00090 UCEC WGS blood_normal CPT0000040163 CPT0000040163.WholeGenome.RP-1303.bam 150089355874 BAM aligned CPTAC3 ddb9ef12-d297-4868-a9d6-192874ce63d2 ba935e9828a5b9b5115e5903960284fb { 'aliquot_tag': 'ALQ_23d66506', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00090.WGS.N.hg38 C3L-00090 UCEC WGS blood_normal CPT0000040163 7959d3f4-80cb-45f5-99ea-248ac2059877_gdc_realn.bam 220754997092 BAM harmonized CPTAC3 833145ed-db94-4cb2-8429-df062a71bd8a de12ab4ba4f59524c4bb67c536a69bf3 { 'aliquot_tag': 'ALQ_23d66506', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00090.WGS.T C3L-00090 UCEC WGS tumor CPT0001140005 CPT0001140005.WholeGenome.RP-1303.bam 167494737156 BAM aligned CPTAC3 2fc76a58-9c13-4726-bbb9-3034c381ea5a 95982fb150b254215f49425f5103d173 { 'aliquot_tag': 'ALQ_f006d593', 'gdc_sample_type': 'Primary Tumor' } @@ -1081,11 +1483,11 @@ C3L-00093.miRNA-Seq.T.hg38 C3L-00093 LUAD miRNA-Seq tumor CPT0086310006 58e9ac0f C3L-00093.RNA-Seq.chimeric.A.hg38 C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 7ae7c765-7c51-40ea-a149-7102d8ff2789.rna_seq.chimeric.gdc_realn.bam 104409662 BAM chimeric harmonized CPTAC3 a35673bd-94d3-4467-9640-1a0a0d562fd4 132223df74185645990e9c12857f47bb { 'aliquot_tag': 'ALQ_bdc5f5b9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00093.RNA-Seq.chimeric.T.hg38 C3L-00093 LUAD RNA-Seq tumor CPT0086310006 4884f6f1-0e60-4c60-be89-5cacd0cea337.rna_seq.chimeric.gdc_realn.bam 33631134 BAM chimeric harmonized CPTAC3 c09ea0e7-cd82-4c04-b808-e4832f242476 0b4c4a75f225405212dc8271c690b6c1 { 'aliquot_tag': 'ALQ_fa658f69', 'gdc_sample_type': 'Primary Tumor' } C3L-00093.RNA-Seq.genomic.A.hg38 C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 7ae7c765-7c51-40ea-a149-7102d8ff2789.rna_seq.genomic.gdc_realn.bam 7790988728 BAM genomic harmonized CPTAC3 294385e2-5b06-4b04-a267-fd5051a49897 6659faf984f3b9be562b30bffccf4134 { 'aliquot_tag': 'ALQ_bdc5f5b9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00093.RNA-Seq.genomic.T.hg38 C3L-00093 LUAD RNA-Seq tumor CPT0086310006 4884f6f1-0e60-4c60-be89-5cacd0cea337.rna_seq.genomic.gdc_realn.bam 8143415019 BAM genomic harmonized CPTAC3 e5abe2ab-ae12-4e98-94c9-f9b92b13343b 964a3ce5884d16433dcf11468bd89d9f { 'aliquot_tag': 'ALQ_fa658f69', 'gdc_sample_type': 'Primary Tumor' } -C3L-00093.RNA-Seq.R1_L002.T C3L-00093 LUAD RNA-Seq tumor CPT0086310006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L002_R1_001.fastq.gz 3969360844 FASTQ R1_L002 unaligned CPTAC3 50f03452-ea50-4a54-91e0-95acdff6f0cb 1f81174054de52607625c1be705e0609 { 'aliquot_tag': 'ALQ_fa658f69', 'gdc_sample_type': 'Primary Tumor' } -C3L-00093.RNA-Seq.R1_L003.A C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 171205_UNC32-K00270_0069_BHN2HGBBXX_TAGCTT_S9_L003_R1_001.fastq.gz 4144511696 FASTQ R1_L003 unaligned CPTAC3 99fb67eb-2ca7-414e-ae01-911a4f5e79b3 8b45d4a18da7b3fe80c6f7a48cee1d05 { 'aliquot_tag': 'ALQ_bdc5f5b9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00093.RNA-Seq.R2_L002.T C3L-00093 LUAD RNA-Seq tumor CPT0086310006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L002_R2_001.fastq.gz 4350518019 FASTQ R2_L002 unaligned CPTAC3 79f2bde6-3fe1-4311-92bd-94ae03050ea3 1437799c416c416e07dac4eca2f79a9d { 'aliquot_tag': 'ALQ_fa658f69', 'gdc_sample_type': 'Primary Tumor' } -C3L-00093.RNA-Seq.R2_L003.A C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 171205_UNC32-K00270_0069_BHN2HGBBXX_TAGCTT_S9_L003_R2_001.fastq.gz 4398493874 FASTQ R2_L003 unaligned CPTAC3 408f76e2-86c8-4b9f-b7d5-dbfbbfc73f8a 1298163cae708da92ec173fa4a707398 { 'aliquot_tag': 'ALQ_bdc5f5b9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00093.RNA-Seq.genomic.T.hg38 C3L-00093 LUAD RNA-Seq tumor CPT0086310006 4884f6f1-0e60-4c60-be89-5cacd0cea337.rna_seq.genomic.gdc_realn.bam 8143415019 BAM genomic harmonized CPTAC3 d4069ad7-276f-4425-8633-0d700fe39c0b 964a3ce5884d16433dcf11468bd89d9f { 'aliquot_tag': 'ALQ_fa658f69', 'gdc_sample_type': 'Primary Tumor' } +C3L-00093.RNA-Seq.R1_L002.T C3L-00093 LUAD RNA-Seq tumor CPT0086310006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L002_R1_001.fastq.gz 3969360844 FASTQ R1_L002 unaligned CPTAC3 50f03452-ea50-4a54-91e0-95acdff6f0cb 1f81174054de52607625c1be705e0609 { 'aliquot_tag': 'ALQ_fa658f69', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00093.RNA-Seq.R1_L003.A C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 171205_UNC32-K00270_0069_BHN2HGBBXX_TAGCTT_S9_L003_R1_001.fastq.gz 4144511696 FASTQ R1_L003 unaligned CPTAC3 99fb67eb-2ca7-414e-ae01-911a4f5e79b3 8b45d4a18da7b3fe80c6f7a48cee1d05 { 'aliquot_tag': 'ALQ_bdc5f5b9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-00093.RNA-Seq.R2_L002.T C3L-00093 LUAD RNA-Seq tumor CPT0086310006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L002_R2_001.fastq.gz 4350518019 FASTQ R2_L002 unaligned CPTAC3 79f2bde6-3fe1-4311-92bd-94ae03050ea3 1437799c416c416e07dac4eca2f79a9d { 'aliquot_tag': 'ALQ_fa658f69', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00093.RNA-Seq.R2_L003.A C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 171205_UNC32-K00270_0069_BHN2HGBBXX_TAGCTT_S9_L003_R2_001.fastq.gz 4398493874 FASTQ R2_L003 unaligned CPTAC3 408f76e2-86c8-4b9f-b7d5-dbfbbfc73f8a 1298163cae708da92ec173fa4a707398 { 'aliquot_tag': 'ALQ_bdc5f5b9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3L-00093.RNA-Seq.transcriptome.A.hg38 C3L-00093 LUAD RNA-Seq tissue_normal CPT0086320006 7ae7c765-7c51-40ea-a149-7102d8ff2789.rna_seq.transcriptome.gdc_realn.bam 9604153244 BAM transcriptome harmonized CPTAC3 c705a219-ac4f-4e45-af11-fe67c53d9d96 b060dac5e8ef66195210ee037df82377 { 'aliquot_tag': 'ALQ_bdc5f5b9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00093.RNA-Seq.transcriptome.T.hg38 C3L-00093 LUAD RNA-Seq tumor CPT0086310006 4884f6f1-0e60-4c60-be89-5cacd0cea337.rna_seq.transcriptome.gdc_realn.bam 11989541712 BAM transcriptome harmonized CPTAC3 c17d5f94-b91d-4fa5-b9f1-ce31f7e3c7a0 6acb08e75f37cdacca2338bbdc1b3204 { 'aliquot_tag': 'ALQ_fa658f69', 'gdc_sample_type': 'Primary Tumor' } C3L-00093.WGS.A C3L-00093 LUAD WGS tissue_normal CPT0086320009 CPT0086320009.WholeGenome.RP-1303.bam 58829759928 BAM aligned CPTAC3 17b6f5c7-3348-43ed-b08d-08ba79cbdd01 754daa9820384f109ef58a8713aa0686 { 'aliquot_tag': 'ALQ_2d7ae828', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1110,12 +1512,12 @@ C3L-00094.miRNA-Seq.T C3L-00094 LUAD miRNA-Seq tumor CPT0000920012 181012_UNC32- C3L-00094.miRNA-Seq.T.hg38 C3L-00094 LUAD miRNA-Seq tumor CPT0000920012 4cd8df3f-175e-4c8a-bf32-dfc9490fb54b_mirnaseq_gdc_realn.bam 242962264 BAM harmonized CPTAC3 85a21e7e-dbbf-4092-bf9d-f0b1655b6f82 c7023e2c0dc1a531a8cb8f0f2b984023 { 'aliquot_tag': 'ALQ_b21d0d08', 'gdc_sample_type': 'Primary Tumor' } C3L-00094.RNA-Seq.chimeric.A.hg38 C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 3939a76d-8c96-4259-9162-90f50265da85.rna_seq.chimeric.gdc_realn.bam 95346629 BAM chimeric harmonized CPTAC3 f4ac9fb5-d25d-41f2-8bcb-d7681cc3e441 489bfabe483cb054e143f55ae40d13b5 { 'aliquot_tag': 'ALQ_910bd1e0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00094.RNA-Seq.chimeric.T.hg38 C3L-00094 LUAD RNA-Seq tumor CPT0000920012 68ccf11f-f940-441e-965b-e8c3ad858421.rna_seq.chimeric.gdc_realn.bam 113806740 BAM chimeric harmonized CPTAC3 0a8a85df-a671-4bf0-b32c-250b11e8ff78 adc1cb586de0605a76ebdd106561c8d2 { 'aliquot_tag': 'ALQ_b21d0d08', 'gdc_sample_type': 'Primary Tumor' } -C3L-00094.RNA-Seq.genomic.A.hg38 C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 3939a76d-8c96-4259-9162-90f50265da85.rna_seq.genomic.gdc_realn.bam 8640444843 BAM genomic harmonized CPTAC3 bb6673e1-f19e-4bce-9a7a-acb970a773dd a3289060dfca393b7afba2172272098e { 'aliquot_tag': 'ALQ_910bd1e0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00094.RNA-Seq.genomic.T.hg38 C3L-00094 LUAD RNA-Seq tumor CPT0000920012 68ccf11f-f940-441e-965b-e8c3ad858421.rna_seq.genomic.gdc_realn.bam 8829381866 BAM genomic harmonized CPTAC3 277f6c66-ac14-4c20-a33c-a6a80c813ba7 ba279bf2237c957ccadff9fe6fe2b5eb { 'aliquot_tag': 'ALQ_b21d0d08', 'gdc_sample_type': 'Primary Tumor' } -C3L-00094.RNA-Seq.R1_L001.T C3L-00094 LUAD RNA-Seq tumor CPT0000920012 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L001_R1_001.fastq.gz 3882737829 FASTQ R1_L001 unaligned CPTAC3 637c9c2b-25a7-484f-8c9e-b289ccb92ca0 1902d6751a2997b1fc862df5bb53bae6 { 'aliquot_tag': 'ALQ_b21d0d08', 'gdc_sample_type': 'Primary Tumor' } -C3L-00094.RNA-Seq.R1_L003.A C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 171215_UNC32-K00270_0072_AHN3THBBXX_CGATGT_S9_L003_R1_001.fastq.gz 4219590338 FASTQ R1_L003 unaligned CPTAC3 c38ccbc9-b426-4508-b494-0a9029f7ea4a 327e491bc904a0f99fe2b2c6d1e8ae56 { 'aliquot_tag': 'ALQ_910bd1e0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00094.RNA-Seq.R2_L001.T C3L-00094 LUAD RNA-Seq tumor CPT0000920012 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L001_R2_001.fastq.gz 4264164416 FASTQ R2_L001 unaligned CPTAC3 44f555cb-1abe-4062-acd5-83afe55fc8e4 89048493887faf90018f5308c9b4b1bd { 'aliquot_tag': 'ALQ_b21d0d08', 'gdc_sample_type': 'Primary Tumor' } -C3L-00094.RNA-Seq.R2_L003.A C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 171215_UNC32-K00270_0072_AHN3THBBXX_CGATGT_S9_L003_R2_001.fastq.gz 4537164488 FASTQ R2_L003 unaligned CPTAC3 b36c367b-dfd3-4390-b75c-96004aed8468 750383a193dea4394818c435f1e1e4bb { 'aliquot_tag': 'ALQ_910bd1e0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00094.RNA-Seq.genomic.A.hg38 C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 3939a76d-8c96-4259-9162-90f50265da85.rna_seq.genomic.gdc_realn.bam 8640444843 BAM genomic harmonized CPTAC3 e7a5ddcf-ae66-4efc-9a1a-b70d0c715ecd a3289060dfca393b7afba2172272098e { 'aliquot_tag': 'ALQ_910bd1e0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00094.RNA-Seq.genomic.T.hg38 C3L-00094 LUAD RNA-Seq tumor CPT0000920012 68ccf11f-f940-441e-965b-e8c3ad858421.rna_seq.genomic.gdc_realn.bam 8829381866 BAM genomic harmonized CPTAC3 f7c8b80f-a532-4190-92e2-391b359d5410 ba279bf2237c957ccadff9fe6fe2b5eb { 'aliquot_tag': 'ALQ_b21d0d08', 'gdc_sample_type': 'Primary Tumor' } +C3L-00094.RNA-Seq.R1_L001.T C3L-00094 LUAD RNA-Seq tumor CPT0000920012 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L001_R1_001.fastq.gz 3882737829 FASTQ R1_L001 unaligned CPTAC3 637c9c2b-25a7-484f-8c9e-b289ccb92ca0 1902d6751a2997b1fc862df5bb53bae6 { 'aliquot_tag': 'ALQ_b21d0d08', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00094.RNA-Seq.R1_L003.A C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 171215_UNC32-K00270_0072_AHN3THBBXX_CGATGT_S9_L003_R1_001.fastq.gz 4219590338 FASTQ R1_L003 unaligned CPTAC3 c38ccbc9-b426-4508-b494-0a9029f7ea4a 327e491bc904a0f99fe2b2c6d1e8ae56 { 'aliquot_tag': 'ALQ_910bd1e0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-00094.RNA-Seq.R2_L001.T C3L-00094 LUAD RNA-Seq tumor CPT0000920012 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L001_R2_001.fastq.gz 4264164416 FASTQ R2_L001 unaligned CPTAC3 44f555cb-1abe-4062-acd5-83afe55fc8e4 89048493887faf90018f5308c9b4b1bd { 'aliquot_tag': 'ALQ_b21d0d08', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00094.RNA-Seq.R2_L003.A C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 171215_UNC32-K00270_0072_AHN3THBBXX_CGATGT_S9_L003_R2_001.fastq.gz 4537164488 FASTQ R2_L003 unaligned CPTAC3 b36c367b-dfd3-4390-b75c-96004aed8468 750383a193dea4394818c435f1e1e4bb { 'aliquot_tag': 'ALQ_910bd1e0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3L-00094.RNA-Seq.transcriptome.A.hg38 C3L-00094 LUAD RNA-Seq tissue_normal CPT0000930006 3939a76d-8c96-4259-9162-90f50265da85.rna_seq.transcriptome.gdc_realn.bam 10456265799 BAM transcriptome harmonized CPTAC3 c5612d70-5f71-4d2a-9cf1-ec4b114fbd24 9c9a72133dd7c6cd2cb6418edc020acb { 'aliquot_tag': 'ALQ_910bd1e0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00094.RNA-Seq.transcriptome.T.hg38 C3L-00094 LUAD RNA-Seq tumor CPT0000920012 68ccf11f-f940-441e-965b-e8c3ad858421.rna_seq.transcriptome.gdc_realn.bam 9808994110 BAM transcriptome harmonized CPTAC3 933f0419-f937-4132-b93e-2db584fe916c 9d97aa07fe2ae8a94fac2275e0f443b0 { 'aliquot_tag': 'ALQ_b21d0d08', 'gdc_sample_type': 'Primary Tumor' } C3L-00094.WGS.A C3L-00094 LUAD WGS tissue_normal CPT0000930009 CPT0000930009.WholeGenome.RP-1303.bam 59287011064 BAM aligned CPTAC3 79c0deec-ba69-47eb-8f0a-431da754ce18 6e13c7fb99e79d75604127e716ec4a45 { 'aliquot_tag': 'ALQ_1b4cc71', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1130,7 +1532,8 @@ C3L-00094.WXS.N C3L-00094 LUAD WXS blood_normal CPT0003900002 CPT0003900002.Whol C3L-00094.WXS.N.hg38 C3L-00094 LUAD WXS blood_normal CPT0003900002 ef7e9196-9b2c-41cf-b589-841beb0f209f_gdc_realn.bam 39049896925 BAM harmonized CPTAC3 328bd359-d972-4bbc-9fc7-541d883db07d 44d519fd30898915b33eab5686535926 { 'aliquot_tag': 'ALQ_e02e75b4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00094.WXS.T C3L-00094 LUAD WXS tumor CPT0000920005 CPT0000920005.WholeExome.RP-1303.bam 33346843527 BAM aligned CPTAC3 7e42e5ac-ad12-4448-93f0-f20886330c14 db544ea830b6415d3ffeef608a12de2c { 'aliquot_tag': 'ALQ_3562a9ea', 'gdc_sample_type': 'Primary Tumor' } C3L-00094.WXS.T.hg38 C3L-00094 LUAD WXS tumor CPT0000920005 f4ce09d1-5d07-486d-9571-594f91df3a2c_gdc_realn.bam 45847939308 BAM harmonized CPTAC3 3f162dd1-53ca-4295-ad07-cd7a796d8d3d 687180fb35d9cb9a1a9c21ea1c16d4a4 { 'aliquot_tag': 'ALQ_3562a9ea', 'gdc_sample_type': 'Primary Tumor' } -C3L-00095.DUP_85a21550.WGS.T C3L-00095 LUAD WGS tumor CPT0001660005_2 CPT0001660005_2.WholeGenome.RP-2158.bam 131674753278 BAM aligned CPTAC3 56cfe2fb-3b77-4894-b411-11ca701c9abd f9177c8bd62b421e4ea92df42af5d5c6 { 'aliquot_tag': 'DUP_85a21550', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot' } +C3L-00095.DUP_85a21550.WGS.T C3L-00095 LUAD WGS tumor CPT0001660005_2 CPT0001660005_2.WholeGenome.RP-2158.bam 131674753278 BAM aligned CPTAC3 56cfe2fb-3b77-4894-b411-11ca701c9abd f9177c8bd62b421e4ea92df42af5d5c6 { 'aliquot_tag': 'DUP_85a21550', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters' } +C3L-00095.DUP_85a21550.WGS.T.hg38 C3L-00095 LUAD WGS tumor CPT0001660005_2 a324e39d-5d35-42a7-b300-09b632b5e8eb_wgs_gdc_realn.bam 404742902068 BAM harmonized CPTAC3 77a55ac2-193b-4d75-917f-f2e6c5b3f917 4bb719a316029bb11a5517ee97c61fa7 { 'aliquot_tag': 'DUP_85a21550', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters' } C3L-00095.MethArray.Green.A C3L-00095 LUAD Methylation Array tissue_normal CPT0001690009 203027390073_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 4f198590-798f-4499-95c8-c45fccd0a879 ffce288a3d37a981972557f097e4bdfc { 'aliquot_tag': 'ALQ_1c256db1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00095.MethArray.Green.T C3L-00095 LUAD Methylation Array tumor CPT0001660005 201557540007_R05C01_Grn.idat 13676222 IDAT Green NA CPTAC3 d3890b3d-a816-4613-ad1f-0c270067e7bd f2ce7466c0e6dde209b3e11f3a4ed345 { 'aliquot_tag': 'ALQ_97c3b64b', 'gdc_sample_type': 'Primary Tumor' } C3L-00095.MethArray.Red.A C3L-00095 LUAD Methylation Array tissue_normal CPT0001690009 203027390073_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 6a9689b1-9866-4771-93c7-05618d8714db 1439bc006cca0047ed73cdd2a74f94da { 'aliquot_tag': 'ALQ_1c256db1', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1141,12 +1544,12 @@ C3L-00095.miRNA-Seq.T C3L-00095 LUAD miRNA-Seq tumor CPT0001660008 181012_UNC32- C3L-00095.miRNA-Seq.T.hg38 C3L-00095 LUAD miRNA-Seq tumor CPT0001660008 c289b80b-bb9e-4d22-8e82-0dc5dc24fcde_mirnaseq_gdc_realn.bam 233378893 BAM harmonized CPTAC3 585e4df7-d12e-4ef0-a77b-fc914e7649ff c15148c3d9cd0b079d5f205a5a2771a7 { 'aliquot_tag': 'ALQ_e972caf6', 'gdc_sample_type': 'Primary Tumor' } C3L-00095.RNA-Seq.chimeric.A.hg38 C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 a97bb267-27a9-4c2e-a502-b048492e9c70.rna_seq.chimeric.gdc_realn.bam 128555111 BAM chimeric harmonized CPTAC3 fffc7dad-b234-49a4-a020-f39078dcc2dd 1e689b26b4b7f59921ed10227e244fd9 { 'aliquot_tag': 'ALQ_8c9a7020', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00095.RNA-Seq.chimeric.T.hg38 C3L-00095 LUAD RNA-Seq tumor CPT0001660008 0e617045-2251-4635-813b-8f55f9527424.rna_seq.chimeric.gdc_realn.bam 66326939 BAM chimeric harmonized CPTAC3 ec7f6788-c89a-45c7-9a3e-f0030c858e12 b0279528666ceab317a31575f15f4418 { 'aliquot_tag': 'ALQ_e972caf6', 'gdc_sample_type': 'Primary Tumor' } -C3L-00095.RNA-Seq.genomic.A.hg38 C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 a97bb267-27a9-4c2e-a502-b048492e9c70.rna_seq.genomic.gdc_realn.bam 7604501464 BAM genomic harmonized CPTAC3 e465dd71-6a0c-42b5-a3fa-abfc1a27b57c ca93b7aed10553067455bfd503c3dd17 { 'aliquot_tag': 'ALQ_8c9a7020', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00095.RNA-Seq.genomic.T.hg38 C3L-00095 LUAD RNA-Seq tumor CPT0001660008 0e617045-2251-4635-813b-8f55f9527424.rna_seq.genomic.gdc_realn.bam 8022260193 BAM genomic harmonized CPTAC3 f32701d2-7229-4ab7-bcf7-34451f68b868 329fe5cfc58340b8ec001404e6b1f7aa { 'aliquot_tag': 'ALQ_e972caf6', 'gdc_sample_type': 'Primary Tumor' } -C3L-00095.RNA-Seq.R1_L002.T C3L-00095 LUAD RNA-Seq tumor CPT0001660008 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L002_R1_001.fastq.gz 3710372720 FASTQ R1_L002 unaligned CPTAC3 7e020a14-2e15-4e88-b8d8-14f8e6e01cbe 3bc13e64396280f25d3702836e00ae08 { 'aliquot_tag': 'ALQ_e972caf6', 'gdc_sample_type': 'Primary Tumor' } -C3L-00095.RNA-Seq.R1_L003.A C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 171215_UNC32-K00270_0072_AHN3THBBXX_TTAGGC_S11_L003_R1_001.fastq.gz 3646684986 FASTQ R1_L003 unaligned CPTAC3 e1a8bf73-5ae2-45b8-a9ed-4c5381346902 81f18182db340bbf52930a96dd8323ff { 'aliquot_tag': 'ALQ_8c9a7020', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00095.RNA-Seq.R2_L002.T C3L-00095 LUAD RNA-Seq tumor CPT0001660008 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4100936080 FASTQ R2_L002 unaligned CPTAC3 35cf770b-a392-4a21-b7cc-707a3aa5092c a8a45b7c2e426539eb1f580ab47c2d40 { 'aliquot_tag': 'ALQ_e972caf6', 'gdc_sample_type': 'Primary Tumor' } -C3L-00095.RNA-Seq.R2_L003.A C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 171215_UNC32-K00270_0072_AHN3THBBXX_TTAGGC_S11_L003_R2_001.fastq.gz 3966899842 FASTQ R2_L003 unaligned CPTAC3 283a503b-f739-49f4-84e9-16216878381a 709c53cfed79cd6a41a3719ec89d5a14 { 'aliquot_tag': 'ALQ_8c9a7020', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00095.RNA-Seq.genomic.A.hg38 C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 a97bb267-27a9-4c2e-a502-b048492e9c70.rna_seq.genomic.gdc_realn.bam 7604501464 BAM genomic harmonized CPTAC3 07a91b77-8385-4a47-9d5c-204284488e34 ca93b7aed10553067455bfd503c3dd17 { 'aliquot_tag': 'ALQ_8c9a7020', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00095.RNA-Seq.genomic.T.hg38 C3L-00095 LUAD RNA-Seq tumor CPT0001660008 0e617045-2251-4635-813b-8f55f9527424.rna_seq.genomic.gdc_realn.bam 8022260193 BAM genomic harmonized CPTAC3 ff3e9462-796a-4405-872b-2ad51acfe0ee 329fe5cfc58340b8ec001404e6b1f7aa { 'aliquot_tag': 'ALQ_e972caf6', 'gdc_sample_type': 'Primary Tumor' } +C3L-00095.RNA-Seq.R1_L002.T C3L-00095 LUAD RNA-Seq tumor CPT0001660008 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L002_R1_001.fastq.gz 3710372720 FASTQ R1_L002 unaligned CPTAC3 7e020a14-2e15-4e88-b8d8-14f8e6e01cbe 3bc13e64396280f25d3702836e00ae08 { 'aliquot_tag': 'ALQ_e972caf6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00095.RNA-Seq.R1_L003.A C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 171215_UNC32-K00270_0072_AHN3THBBXX_TTAGGC_S11_L003_R1_001.fastq.gz 3646684986 FASTQ R1_L003 unaligned CPTAC3 e1a8bf73-5ae2-45b8-a9ed-4c5381346902 81f18182db340bbf52930a96dd8323ff { 'aliquot_tag': 'ALQ_8c9a7020', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-00095.RNA-Seq.R2_L002.T C3L-00095 LUAD RNA-Seq tumor CPT0001660008 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4100936080 FASTQ R2_L002 unaligned CPTAC3 35cf770b-a392-4a21-b7cc-707a3aa5092c a8a45b7c2e426539eb1f580ab47c2d40 { 'aliquot_tag': 'ALQ_e972caf6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00095.RNA-Seq.R2_L003.A C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 171215_UNC32-K00270_0072_AHN3THBBXX_TTAGGC_S11_L003_R2_001.fastq.gz 3966899842 FASTQ R2_L003 unaligned CPTAC3 283a503b-f739-49f4-84e9-16216878381a 709c53cfed79cd6a41a3719ec89d5a14 { 'aliquot_tag': 'ALQ_8c9a7020', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3L-00095.RNA-Seq.transcriptome.A.hg38 C3L-00095 LUAD RNA-Seq tissue_normal CPT0001690006 a97bb267-27a9-4c2e-a502-b048492e9c70.rna_seq.transcriptome.gdc_realn.bam 9355054145 BAM transcriptome harmonized CPTAC3 769ef4a5-9b5e-4c91-bb3f-3aaf4686a230 a9a42fad48babd17c58e8ca313b13597 { 'aliquot_tag': 'ALQ_8c9a7020', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00095.RNA-Seq.transcriptome.T.hg38 C3L-00095 LUAD RNA-Seq tumor CPT0001660008 0e617045-2251-4635-813b-8f55f9527424.rna_seq.transcriptome.gdc_realn.bam 10141946868 BAM transcriptome harmonized CPTAC3 f785e31a-1cdd-43cd-84a6-76d857f32e3e 762d27554dc1b3537befdb5139b929b2 { 'aliquot_tag': 'ALQ_e972caf6', 'gdc_sample_type': 'Primary Tumor' } C3L-00095.WGS.A C3L-00095 LUAD WGS tissue_normal CPT0001690009 CPT0001690009.WholeGenome.RP-1303.bam 56181467899 BAM aligned CPTAC3 9285b91a-9cc5-4501-a1ab-dabcbc20f91c e0785f5f8ff4df9509532cc68b1eef50 { 'aliquot_tag': 'ALQ_1c256db1', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1171,12 +1574,12 @@ C3L-00096.miRNA-Seq.T C3L-00096 CCRCC miRNA-Seq tumor CPT0001180164 181113_UNC31 C3L-00096.miRNA-Seq.T.hg38 C3L-00096 CCRCC miRNA-Seq tumor CPT0001180164 b5ef2feb-6549-432b-a628-8250b520d2cf_mirnaseq_gdc_realn.bam 199587198 BAM harmonized CPTAC3 da7ebade-e4ea-49b5-b272-f1bdd504040b f69e3e82df3f08914f0320251e40915c { 'aliquot_tag': 'ALQ_1569c5b5', 'gdc_sample_type': 'Primary Tumor' } C3L-00096.RNA-Seq.chimeric.A.hg38 C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 54e53ca5-764f-4c06-8b91-353e8c304021.rna_seq.chimeric.gdc_realn.bam 67692167 BAM chimeric harmonized CPTAC3 d2ff2306-5912-4d22-ac7c-da4e05742f1e eff37ba26b4ad358684ad3fc2139b410 { 'aliquot_tag': 'ALQ_919f4098', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00096.RNA-Seq.chimeric.T.hg38 C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 d8cf8943-bfbd-40db-9aa3-47d4125d7e98.rna_seq.chimeric.gdc_realn.bam 82634280 BAM chimeric harmonized CPTAC3 dab8ad89-89ab-479b-b851-0ea8739aeda7 5c6ebfe8cbea1d1beb16d9d2f87a7f22 { 'aliquot_tag': 'ALQ_1569c5b5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00096.RNA-Seq.genomic.A.hg38 C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 54e53ca5-764f-4c06-8b91-353e8c304021.rna_seq.genomic.gdc_realn.bam 8903811157 BAM genomic harmonized CPTAC3 d5111241-54e0-4872-ad8b-fbef5e98e414 60d2ca5571de4c02e75f876b769dd054 { 'aliquot_tag': 'ALQ_919f4098', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00096.RNA-Seq.genomic.T.hg38 C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 d8cf8943-bfbd-40db-9aa3-47d4125d7e98.rna_seq.genomic.gdc_realn.bam 8094021973 BAM genomic harmonized CPTAC3 3c36bb11-1a03-47c1-a06e-611c424edf1f 0445d4b7b59bf1f244448c8cca4a22bc { 'aliquot_tag': 'ALQ_1569c5b5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00096.RNA-Seq.R1_L003.T C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L003_R1_001.fastq.gz 3934187560 FASTQ R1_L003 unaligned CPTAC3 1fc59c06-7a5e-4273-b073-bddfa348fc5f 7b8be9dd298c3687df82dbc6e0e4cb1f { 'aliquot_tag': 'ALQ_1569c5b5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00096.RNA-Seq.R1_L007.A C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 171208_UNC32-K00270_0071_BHN7K5BBXX_TTAGGC_S54_L007_R1_001.fastq.gz 4229200870 FASTQ R1_L007 unaligned CPTAC3 05b22361-64fa-4d7c-b888-fbfb1a9497e7 1275cae63cc7a947dd153d33233da4fc { 'aliquot_tag': 'ALQ_919f4098', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00096.RNA-Seq.R2_L003.T C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L003_R2_001.fastq.gz 4273651772 FASTQ R2_L003 unaligned CPTAC3 baac50d4-1206-4e90-939e-0d9f286b75b1 7e680fd356291a9055f66e3d57a36386 { 'aliquot_tag': 'ALQ_1569c5b5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00096.RNA-Seq.R2_L007.A C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 171208_UNC32-K00270_0071_BHN7K5BBXX_TTAGGC_S54_L007_R2_001.fastq.gz 4608215924 FASTQ R2_L007 unaligned CPTAC3 2710d6dc-f819-4609-a304-f11578f515bf 7007a39cafe51e02692a79d284a8a788 { 'aliquot_tag': 'ALQ_919f4098', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00096.RNA-Seq.genomic.A.hg38 C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 54e53ca5-764f-4c06-8b91-353e8c304021.rna_seq.genomic.gdc_realn.bam 8903811157 BAM genomic harmonized CPTAC3 7d1b3868-a378-484b-b9cc-91f34c3a4843 60d2ca5571de4c02e75f876b769dd054 { 'aliquot_tag': 'ALQ_919f4098', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00096.RNA-Seq.genomic.T.hg38 C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 d8cf8943-bfbd-40db-9aa3-47d4125d7e98.rna_seq.genomic.gdc_realn.bam 8094021973 BAM genomic harmonized CPTAC3 3492d4e2-3b65-4f60-ae21-2084541a75af 0445d4b7b59bf1f244448c8cca4a22bc { 'aliquot_tag': 'ALQ_1569c5b5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00096.RNA-Seq.R1_L003.T C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L003_R1_001.fastq.gz 3934187560 FASTQ R1_L003 unaligned CPTAC3 1fc59c06-7a5e-4273-b073-bddfa348fc5f 7b8be9dd298c3687df82dbc6e0e4cb1f { 'aliquot_tag': 'ALQ_1569c5b5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00096.RNA-Seq.R1_L007.A C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 171208_UNC32-K00270_0071_BHN7K5BBXX_TTAGGC_S54_L007_R1_001.fastq.gz 4229200870 FASTQ R1_L007 unaligned CPTAC3 05b22361-64fa-4d7c-b888-fbfb1a9497e7 1275cae63cc7a947dd153d33233da4fc { 'aliquot_tag': 'ALQ_919f4098', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00096.RNA-Seq.R2_L003.T C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L003_R2_001.fastq.gz 4273651772 FASTQ R2_L003 unaligned CPTAC3 baac50d4-1206-4e90-939e-0d9f286b75b1 7e680fd356291a9055f66e3d57a36386 { 'aliquot_tag': 'ALQ_1569c5b5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00096.RNA-Seq.R2_L007.A C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 171208_UNC32-K00270_0071_BHN7K5BBXX_TTAGGC_S54_L007_R2_001.fastq.gz 4608215924 FASTQ R2_L007 unaligned CPTAC3 2710d6dc-f819-4609-a304-f11578f515bf 7007a39cafe51e02692a79d284a8a788 { 'aliquot_tag': 'ALQ_919f4098', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-00096.RNA-Seq.transcriptome.A.hg38 C3L-00096 CCRCC RNA-Seq tissue_normal CPT0001190006 54e53ca5-764f-4c06-8b91-353e8c304021.rna_seq.transcriptome.gdc_realn.bam 11002737747 BAM transcriptome harmonized CPTAC3 556163f5-82c3-4578-8f1a-3301eccd7e8a 3c273bfae6ffa1c8b16bff47fc4a36ab { 'aliquot_tag': 'ALQ_919f4098', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00096.RNA-Seq.transcriptome.T.hg38 C3L-00096 CCRCC RNA-Seq tumor CPT0001180164 d8cf8943-bfbd-40db-9aa3-47d4125d7e98.rna_seq.transcriptome.gdc_realn.bam 12439367049 BAM transcriptome harmonized CPTAC3 d9053e6c-fd29-4349-a188-153977637e0a 1b0c3412e03c1c6c8c6d425894a2ba7c { 'aliquot_tag': 'ALQ_1569c5b5', 'gdc_sample_type': 'Primary Tumor' } C3L-00096.WGS.A C3L-00096 CCRCC WGS tissue_normal CPT0001190009 CPT0001190009.WholeGenome.RP-1303.bam 49655475100 BAM aligned CPTAC3 b8cc1af2-6169-4a55-9fab-c787da5eae88 ba7110894d1afccde38b0b18891b861e { 'aliquot_tag': 'ALQ_1205d09', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1199,12 +1602,12 @@ C3L-00097.miRNA-Seq.T C3L-00097 CCRCC miRNA-Seq tumor CPT0000780008 181113_UNC31 C3L-00097.miRNA-Seq.T.hg38 C3L-00097 CCRCC miRNA-Seq tumor CPT0000780008 5c85a222-d95f-406a-b092-bd4e0ffa25e3_mirnaseq_gdc_realn.bam 250549538 BAM harmonized CPTAC3 8e519958-8088-4566-b02e-c1855018f77e 8b9d816db9aecdda7abac33d32bced0a { 'aliquot_tag': 'ALQ_3b69ac86', 'gdc_sample_type': 'Primary Tumor' } C3L-00097.RNA-Seq.chimeric.A.hg38 C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 a36ea5c6-c608-47b5-b2be-6a3e4235d132.rna_seq.chimeric.gdc_realn.bam 78263645 BAM chimeric harmonized CPTAC3 9db869a4-ff77-4733-9294-267c5238d9e1 037f08d1dec2586a480ef777724c85f7 { 'aliquot_tag': 'ALQ_e1b1a831', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00097.RNA-Seq.chimeric.T.hg38 C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 77e2a7e2-90f7-4262-8ea1-0332d9de7e8d.rna_seq.chimeric.gdc_realn.bam 77406668 BAM chimeric harmonized CPTAC3 dc32b0e4-0697-4774-8a7c-930cb80bf29f 964ffddcfc7aa0cb79a330f73f0075ec { 'aliquot_tag': 'ALQ_3b69ac86', 'gdc_sample_type': 'Primary Tumor' } -C3L-00097.RNA-Seq.genomic.A.hg38 C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 a36ea5c6-c608-47b5-b2be-6a3e4235d132.rna_seq.genomic.gdc_realn.bam 8581234203 BAM genomic harmonized CPTAC3 05df10e7-a49b-4838-8dc1-9429aaf6b6b4 d946319ecea2e74bdc138b0882f4fec0 { 'aliquot_tag': 'ALQ_e1b1a831', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00097.RNA-Seq.genomic.T.hg38 C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 77e2a7e2-90f7-4262-8ea1-0332d9de7e8d.rna_seq.genomic.gdc_realn.bam 7881393716 BAM genomic harmonized CPTAC3 4d6291e3-7659-4d64-aa33-5db4c39d4448 334c77202c1d43e402661dd9ebf44944 { 'aliquot_tag': 'ALQ_3b69ac86', 'gdc_sample_type': 'Primary Tumor' } -C3L-00097.RNA-Seq.R1_L002.T C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L002_R1_001.fastq.gz 4042629868 FASTQ R1_L002 unaligned CPTAC3 571dd95a-2c63-4c72-83a5-69539b2aa695 6744def6ff0c4113d3a268ee7c9a7010 { 'aliquot_tag': 'ALQ_3b69ac86', 'gdc_sample_type': 'Primary Tumor' } -C3L-00097.RNA-Seq.R1_L007.A C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 171208_UNC32-K00270_0071_BHN7K5BBXX_TGACCA_S55_L007_R1_001.fastq.gz 4179767101 FASTQ R1_L007 unaligned CPTAC3 60970db8-5749-434f-90fc-1719fd5f0e51 68baf44c9f1d096a18f9e6c2dc4a4317 { 'aliquot_tag': 'ALQ_e1b1a831', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00097.RNA-Seq.R2_L002.T C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L002_R2_001.fastq.gz 4453379412 FASTQ R2_L002 unaligned CPTAC3 89f65d1c-ba11-4ab8-8f06-16d32be9f046 06df2896bb1d9facb5934349fc428261 { 'aliquot_tag': 'ALQ_3b69ac86', 'gdc_sample_type': 'Primary Tumor' } -C3L-00097.RNA-Seq.R2_L007.A C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 171208_UNC32-K00270_0071_BHN7K5BBXX_TGACCA_S55_L007_R2_001.fastq.gz 4400479017 FASTQ R2_L007 unaligned CPTAC3 5adf9903-68ab-4d57-b95f-0dd015b64107 2b28d556bee0a0e3081572e2f06615f0 { 'aliquot_tag': 'ALQ_e1b1a831', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00097.RNA-Seq.genomic.A.hg38 C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 a36ea5c6-c608-47b5-b2be-6a3e4235d132.rna_seq.genomic.gdc_realn.bam 8581234203 BAM genomic harmonized CPTAC3 f96ae298-74b9-4833-9cc4-8edc1769e909 d946319ecea2e74bdc138b0882f4fec0 { 'aliquot_tag': 'ALQ_e1b1a831', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00097.RNA-Seq.genomic.T.hg38 C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 77e2a7e2-90f7-4262-8ea1-0332d9de7e8d.rna_seq.genomic.gdc_realn.bam 7881393716 BAM genomic harmonized CPTAC3 b056f6dd-17eb-41a5-9bc0-e8767eea1f11 334c77202c1d43e402661dd9ebf44944 { 'aliquot_tag': 'ALQ_3b69ac86', 'gdc_sample_type': 'Primary Tumor' } +C3L-00097.RNA-Seq.R1_L002.T C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L002_R1_001.fastq.gz 4042629868 FASTQ R1_L002 unaligned CPTAC3 571dd95a-2c63-4c72-83a5-69539b2aa695 6744def6ff0c4113d3a268ee7c9a7010 { 'aliquot_tag': 'ALQ_3b69ac86', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00097.RNA-Seq.R1_L007.A C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 171208_UNC32-K00270_0071_BHN7K5BBXX_TGACCA_S55_L007_R1_001.fastq.gz 4179767101 FASTQ R1_L007 unaligned CPTAC3 60970db8-5749-434f-90fc-1719fd5f0e51 68baf44c9f1d096a18f9e6c2dc4a4317 { 'aliquot_tag': 'ALQ_e1b1a831', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00097.RNA-Seq.R2_L002.T C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L002_R2_001.fastq.gz 4453379412 FASTQ R2_L002 unaligned CPTAC3 89f65d1c-ba11-4ab8-8f06-16d32be9f046 06df2896bb1d9facb5934349fc428261 { 'aliquot_tag': 'ALQ_3b69ac86', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00097.RNA-Seq.R2_L007.A C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 171208_UNC32-K00270_0071_BHN7K5BBXX_TGACCA_S55_L007_R2_001.fastq.gz 4400479017 FASTQ R2_L007 unaligned CPTAC3 5adf9903-68ab-4d57-b95f-0dd015b64107 2b28d556bee0a0e3081572e2f06615f0 { 'aliquot_tag': 'ALQ_e1b1a831', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-00097.RNA-Seq.transcriptome.A.hg38 C3L-00097 CCRCC RNA-Seq tissue_normal CPT0000790006 a36ea5c6-c608-47b5-b2be-6a3e4235d132.rna_seq.transcriptome.gdc_realn.bam 10805118483 BAM transcriptome harmonized CPTAC3 fa1fd22f-f405-4ec4-9008-131eb4066ed4 b1c9d20b1300a94facdd36608738a34b { 'aliquot_tag': 'ALQ_e1b1a831', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00097.RNA-Seq.transcriptome.T.hg38 C3L-00097 CCRCC RNA-Seq tumor CPT0000780008 77e2a7e2-90f7-4262-8ea1-0332d9de7e8d.rna_seq.transcriptome.gdc_realn.bam 10624318545 BAM transcriptome harmonized CPTAC3 42392459-08b6-44a9-bce0-8e26d0bd795a 9e5d75aef87ddf7019e99e780e3248a6 { 'aliquot_tag': 'ALQ_3b69ac86', 'gdc_sample_type': 'Primary Tumor' } C3L-00097.WGS.A C3L-00097 CCRCC WGS tissue_normal CPT0000790009 CPT0000790009.WholeGenome.RP-1303.bam 59809713640 BAM aligned CPTAC3 8faa0733-ddb1-4ad5-a73f-fa578084cdee c78cd4a787145429925235add821af84 { 'aliquot_tag': 'ALQ_710eb5a0', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1224,12 +1627,15 @@ C3L-00098.MethArray.Red.T C3L-00098 UCEC Methylation Array tumor CPT0000980005 2 C3L-00098.miRNA-Seq.T C3L-00098 UCEC miRNA-Seq tumor CPT0000980008 181012_UNC32-K00270_0124_AH223CBBXY_CGATGT_S23_L002_R1_001.unaln.bam 226813996 BAM unaligned CPTAC3 ee5705ae-5929-4a94-9097-150ae4aec4a0 08e4cb7ab60af5703efe7c41a4f462ba { 'aliquot_tag': 'ALQ_163cdf6', 'gdc_sample_type': 'Primary Tumor' } C3L-00098.miRNA-Seq.T.hg38 C3L-00098 UCEC miRNA-Seq tumor CPT0000980008 4ed6514b-c3af-40ad-bc76-335362e9e910_mirnaseq_gdc_realn.bam 246051874 BAM harmonized CPTAC3 6bd195ba-3421-41e1-b9f2-19b8157cfbc6 4cccaa7d2cb85bd3766070be2f7fa430 { 'aliquot_tag': 'ALQ_163cdf6', 'gdc_sample_type': 'Primary Tumor' } C3L-00098.RNA-Seq.chimeric.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0000980008 7bd5a7a0-3193-421b-8426-2d2c7c1218a1.rna_seq.chimeric.gdc_realn.bam 89471173 BAM chimeric harmonized CPTAC3 69d23c44-50f9-4595-addf-c8d4b41638a0 8f866ba20c0fd85b0f17a12e560a1ca4 { 'aliquot_tag': 'ALQ_163cdf6', 'gdc_sample_type': 'Primary Tumor' } +C3L-00098.RNA-Seq.chimeric.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0349410001 3b5dcf63-c267-4867-9886-2a0e79f6c3d1.rna_seq.chimeric.gdc_realn.bam 158981237 BAM chimeric harmonized CPTAC3 6b4bf932-37fa-42d9-ba11-7e8dc25337e2 7ea36228f151e758ee05983d1ae6446d { 'aliquot_tag': 'ALQ_e16e7311', 'gdc_sample_type': 'Primary Tumor' } C3L-00098.RNA-Seq.genomic.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0000980008 7bd5a7a0-3193-421b-8426-2d2c7c1218a1.rna_seq.genomic.gdc_realn.bam 6832199181 BAM genomic harmonized CPTAC3 58d19e37-dbb9-4b31-b59c-24171d22ead4 0b57b235c415ec7af02f1f1a83ad6d7a { 'aliquot_tag': 'ALQ_163cdf6', 'gdc_sample_type': 'Primary Tumor' } -C3L-00098.RNA-Seq.R1_L002.T C3L-00098 UCEC RNA-Seq tumor CPT0000980008 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3242317433 FASTQ R1_L002 unaligned CPTAC3 31252ba9-e052-4b77-809a-f936379ae00c d12bc29c9f283bfe877878c9fe7a4f8f { 'aliquot_tag': 'ALQ_163cdf6', 'gdc_sample_type': 'Primary Tumor' } -C3L-00098.RNA-Seq.R1_.T C3L-00098 UCEC RNA-Seq tumor CPT0349410001 20210729_P3_E1_WB7988-Plate3_S49_R1_001.fastq.gz 5378348437 FASTQ R1_ unaligned CPTAC3 abf7cbc1-260e-44e6-a0c8-0aa0cc62e80d 29083cfa93b403547d4fed2f4b405e3e { 'aliquot_tag': 'ALQ_e16e7311', 'gdc_sample_type': 'Primary Tumor' } -C3L-00098.RNA-Seq.R2_L002.T C3L-00098 UCEC RNA-Seq tumor CPT0000980008 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 3679125276 FASTQ R2_L002 unaligned CPTAC3 23be22ae-de50-4d74-a7c0-c890adbc662a 91261da7c4c761e5090993746de3e419 { 'aliquot_tag': 'ALQ_163cdf6', 'gdc_sample_type': 'Primary Tumor' } -C3L-00098.RNA-Seq.R2_.T C3L-00098 UCEC RNA-Seq tumor CPT0349410001 20210729_P3_E1_WB7988-Plate3_S49_R2_001.fastq.gz 5567821485 FASTQ R2_ unaligned CPTAC3 0d616095-baa8-4e12-a6ad-20182be762fb 8d40e10abc743b62aa0c96adbc25ca8a { 'aliquot_tag': 'ALQ_e16e7311', 'gdc_sample_type': 'Primary Tumor' } +C3L-00098.RNA-Seq.genomic.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0349410001 3b5dcf63-c267-4867-9886-2a0e79f6c3d1.rna_seq.genomic.gdc_realn.bam 7475631078 BAM genomic harmonized CPTAC3 792c3c1a-2cbc-4272-a41e-69084b5ee635 f5c874f198f8943044b8bfba76d65623 { 'aliquot_tag': 'ALQ_e16e7311', 'gdc_sample_type': 'Primary Tumor' } +C3L-00098.RNA-Seq.R1_L002.T C3L-00098 UCEC RNA-Seq tumor CPT0000980008 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3242317433 FASTQ R1_L002 unaligned CPTAC3 31252ba9-e052-4b77-809a-f936379ae00c d12bc29c9f283bfe877878c9fe7a4f8f { 'aliquot_tag': 'ALQ_163cdf6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00098.RNA-Seq.R2_L002.T C3L-00098 UCEC RNA-Seq tumor CPT0000980008 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 3679125276 FASTQ R2_L002 unaligned CPTAC3 23be22ae-de50-4d74-a7c0-c890adbc662a 91261da7c4c761e5090993746de3e419 { 'aliquot_tag': 'ALQ_163cdf6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00098.RNA-Seq.T C3L-00098 UCEC RNA-Seq tumor CPT0349410001 20210729_P3_E1_WB7988-Plate3_S49_R1_001.fastq.gz 5378348437 FASTQ unaligned CPTAC3 abf7cbc1-260e-44e6-a0c8-0aa0cc62e80d 29083cfa93b403547d4fed2f4b405e3e +C3L-00098.RNA-Seq.T C3L-00098 UCEC RNA-Seq tumor CPT0349410001 20210729_P3_E1_WB7988-Plate3_S49_R2_001.fastq.gz 5567821485 FASTQ unaligned CPTAC3 0d616095-baa8-4e12-a6ad-20182be762fb 8d40e10abc743b62aa0c96adbc25ca8a C3L-00098.RNA-Seq.transcriptome.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0000980008 7bd5a7a0-3193-421b-8426-2d2c7c1218a1.rna_seq.transcriptome.gdc_realn.bam 9909890732 BAM transcriptome harmonized CPTAC3 4100aed3-8776-45f6-bfcd-067a87ee2692 f86f6ff154da3d03505666b9f412e077 { 'aliquot_tag': 'ALQ_163cdf6', 'gdc_sample_type': 'Primary Tumor' } +C3L-00098.RNA-Seq.transcriptome.T.hg38 C3L-00098 UCEC RNA-Seq tumor CPT0349410001 3b5dcf63-c267-4867-9886-2a0e79f6c3d1.rna_seq.transcriptome.gdc_realn.bam 4506420849 BAM transcriptome harmonized CPTAC3 81cca721-b45a-4f6a-b739-73e5f104e239 1c3e922cc87392c1b9558d59cc076db8 { 'aliquot_tag': 'ALQ_e16e7311', 'gdc_sample_type': 'Primary Tumor' } C3L-00098.WGS.N C3L-00098 UCEC WGS blood_normal CPT0003930002 CPT0003930002.WholeGenome.RP-1303.bam 134189724250 BAM aligned CPTAC3 4e396754-9ddd-446e-ba62-da919ae9346d 0a096fe6186ad9a33c2271a430c889a5 { 'aliquot_tag': 'ALQ_a78e0f64', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00098.WGS.N.hg38 C3L-00098 UCEC WGS blood_normal CPT0003930002 0f46b9b0-6bff-4156-b505-669d72cc9428_gdc_realn.bam 196155902904 BAM harmonized CPTAC3 385cdfe0-fbae-486f-b333-4a88d1209afb e54a0eeb5225ccdacbc5fcf66680e271 { 'aliquot_tag': 'ALQ_a78e0f64', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00098.WGS.T C3L-00098 UCEC WGS tumor CPT0000980005 CPT0000980005.WholeGenome.RP-1303.bam 148178993129 BAM aligned CPTAC3 113891b2-abb7-49a4-b0ce-6638a3a6a803 5eee33956e07eefd69d2e8745fe78e69 { 'aliquot_tag': 'ALQ_7fd2b14b', 'gdc_sample_type': 'Primary Tumor' } @@ -1249,11 +1655,11 @@ C3L-00102.miRNA-Seq.T.hg38 C3L-00102 PDA miRNA-Seq tumor CPT0001730008 bc3b9beb- C3L-00102.RNA-Seq.chimeric.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 aa274968-d69e-4e77-aae9-fee9c28a1b5b.rna_seq.chimeric.gdc_realn.bam 104705092 BAM chimeric harmonized CPTAC3 91c303ba-b5ed-4f99-a38c-a3b8b46a410f 727963cc0b882fd84244f8e1f0f2b685 { 'aliquot_tag': 'ALQ_82364e84', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00102.RNA-Seq.chimeric.T.hg38 C3L-00102 PDA RNA-Seq tumor CPT0001730008 5f9e5b5a-d6bb-4d6c-b069-b871decfd5c7.rna_seq.chimeric.gdc_realn.bam 83795294 BAM chimeric harmonized CPTAC3 b4b32485-98ff-4b4a-b0ba-c61cbcfc432a ad1ceeca816d15357f5be1cfbf93d145 { 'aliquot_tag': 'ALQ_eace9623', 'gdc_sample_type': 'Primary Tumor' } C3L-00102.RNA-Seq.genomic.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 aa274968-d69e-4e77-aae9-fee9c28a1b5b.rna_seq.genomic.gdc_realn.bam 8957352819 BAM genomic harmonized CPTAC3 40379d81-a9bf-4007-9473-e4f61e16ffd0 7ae55470bb0004176d1d2924dd989ed7 { 'aliquot_tag': 'ALQ_82364e84', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00102.RNA-Seq.genomic.T.hg38 C3L-00102 PDA RNA-Seq tumor CPT0001730008 5f9e5b5a-d6bb-4d6c-b069-b871decfd5c7.rna_seq.genomic.gdc_realn.bam 7910671087 BAM genomic harmonized CPTAC3 2c220dde-b7bb-4d97-91cf-e8c4a7c7ef8b 72a77a8fe8d5c99f2885954c2d7d04b1 { 'aliquot_tag': 'ALQ_eace9623', 'gdc_sample_type': 'Primary Tumor' } -C3L-00102.RNA-Seq.R1_L001.T C3L-00102 PDA RNA-Seq tumor CPT0001730008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3735627356 FASTQ R1_L001 unaligned CPTAC3 5002990e-a20d-4114-93ea-c5c09f148fed 6ccfcbbda9048c6855fd04cf631e2b32 { 'aliquot_tag': 'ALQ_eace9623', 'gdc_sample_type': 'Primary Tumor' } -C3L-00102.RNA-Seq.R1_L007.A C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATCACG_S57_L007_R1_001.fastq.gz 4097212793 FASTQ R1_L007 unaligned CPTAC3 893b0db2-7d98-4d74-af8c-93039af57455 73bdc2cd750d59951b8f3dc1d84a5e75 { 'aliquot_tag': 'ALQ_82364e84', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00102.RNA-Seq.R2_L001.T C3L-00102 PDA RNA-Seq tumor CPT0001730008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4168581145 FASTQ R2_L001 unaligned CPTAC3 2090faff-ade5-48df-a986-2d0902b1ee27 cd50fc4e06775135eaad276fa22335dc { 'aliquot_tag': 'ALQ_eace9623', 'gdc_sample_type': 'Primary Tumor' } -C3L-00102.RNA-Seq.R2_L007.A C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATCACG_S57_L007_R2_001.fastq.gz 4030560886 FASTQ R2_L007 unaligned CPTAC3 f51f3a38-4291-448f-a064-3215b323e437 3422dbd2446fe4fedee4c76a772425e8 { 'aliquot_tag': 'ALQ_82364e84', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00102.RNA-Seq.genomic.T.hg38 C3L-00102 PDA RNA-Seq tumor CPT0001730008 5f9e5b5a-d6bb-4d6c-b069-b871decfd5c7.rna_seq.genomic.gdc_realn.bam 7910671087 BAM genomic harmonized CPTAC3 76df7299-0d2b-469c-9f26-1cb15bd287ae 72a77a8fe8d5c99f2885954c2d7d04b1 { 'aliquot_tag': 'ALQ_eace9623', 'gdc_sample_type': 'Primary Tumor' } +C3L-00102.RNA-Seq.R1_L001.T C3L-00102 PDA RNA-Seq tumor CPT0001730008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3735627356 FASTQ R1_L001 unaligned CPTAC3 5002990e-a20d-4114-93ea-c5c09f148fed 6ccfcbbda9048c6855fd04cf631e2b32 { 'aliquot_tag': 'ALQ_eace9623', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00102.RNA-Seq.R1_L007.A C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATCACG_S57_L007_R1_001.fastq.gz 4097212793 FASTQ R1_L007 unaligned CPTAC3 893b0db2-7d98-4d74-af8c-93039af57455 73bdc2cd750d59951b8f3dc1d84a5e75 { 'aliquot_tag': 'ALQ_82364e84', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00102.RNA-Seq.R2_L001.T C3L-00102 PDA RNA-Seq tumor CPT0001730008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4168581145 FASTQ R2_L001 unaligned CPTAC3 2090faff-ade5-48df-a986-2d0902b1ee27 cd50fc4e06775135eaad276fa22335dc { 'aliquot_tag': 'ALQ_eace9623', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00102.RNA-Seq.R2_L007.A C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATCACG_S57_L007_R2_001.fastq.gz 4030560886 FASTQ R2_L007 unaligned CPTAC3 f51f3a38-4291-448f-a064-3215b323e437 3422dbd2446fe4fedee4c76a772425e8 { 'aliquot_tag': 'ALQ_82364e84', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-00102.RNA-Seq.transcriptome.A.hg38 C3L-00102 PDA RNA-Seq tissue_normal CPT0001750006 aa274968-d69e-4e77-aae9-fee9c28a1b5b.rna_seq.transcriptome.gdc_realn.bam 10158982956 BAM transcriptome harmonized CPTAC3 84c7bb0f-c886-46bd-aff9-3bca2ba705ed df7265cce92a9d7ea821396ab4e7fd1f { 'aliquot_tag': 'ALQ_82364e84', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00102.RNA-Seq.transcriptome.T.hg38 C3L-00102 PDA RNA-Seq tumor CPT0001730008 5f9e5b5a-d6bb-4d6c-b069-b871decfd5c7.rna_seq.transcriptome.gdc_realn.bam 10482851004 BAM transcriptome harmonized CPTAC3 96eaabfd-4722-4dc1-b09a-cbd966daed5d 260be76070cb9d55435d5f09a510e608 { 'aliquot_tag': 'ALQ_eace9623', 'gdc_sample_type': 'Primary Tumor' } C3L-00102.Targeted.T C3L-00102 PDA Targeted Sequencing tumor CPT0001730005_1 CPT0001730005_1.CustomSelection.RP-1303.PDO-18786.bam 4268012966 BAM aligned CPTAC3 1c61d872-d871-49aa-9984-438fbe98f2cb 66c9ae2df5a9d136514351be27592a40 { 'aliquot_tag': 'ALQ_82396bd3', 'gdc_sample_type': 'Primary Tumor' } @@ -1281,9 +1687,9 @@ C3L-00103.DUP_605d6335.WXS.T.hg38 C3L-00103 CCRCC WXS tumor CPT0000630006 3990af C3L-00103.DUP_8a5bb92.miRNA-Seq.T C3L-00103 CCRCC miRNA-Seq tumor CPT0000650008 200526_UNC32-K00270_0248_BHH7WFBBXY_GTTTCG_S34_L002_R1_001.unaln.bam 261660434 BAM unaligned CPTAC3 73d38500-a837-4cf8-80f8-8e61a7b49a51 ad297c8c923db7437f27b05bf2f25ec0 { 'aliquot_tag': 'DUP_8a5bb92', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00103.DUP_8a5bb92.miRNA-Seq.T.hg38 C3L-00103 CCRCC miRNA-Seq tumor CPT0000650008 827db034-8884-434e-b7a2-02e3ada31709_mirnaseq_gdc_realn.bam 297445843 BAM harmonized CPTAC3 399cee47-430f-4e12-987a-756b8023b6bd 2702ef33f20b37932762147bdaa1511a { 'aliquot_tag': 'DUP_8a5bb92', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00103.DUP_8a5bb92.RNA-Seq.chimeric.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 5481a331-e2be-43e9-9985-425f3a0c08f9.rna_seq.chimeric.gdc_realn.bam 68654935 BAM chimeric harmonized CPTAC3 16f7ccee-2955-4f90-b7b2-1c388c84b8f3 b2125d752c86cc3801dc5fb861a066c7 { 'aliquot_tag': 'DUP_8a5bb92', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00103.DUP_8a5bb92.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 5481a331-e2be-43e9-9985-425f3a0c08f9.rna_seq.genomic.gdc_realn.bam 7897833348 BAM genomic harmonized CPTAC3 40199195-9527-4f8a-8d90-7f20ccad062c 0d658952661819bee94dc205bc563ba9 { 'aliquot_tag': 'DUP_8a5bb92', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00103.DUP_8a5bb92.RNA-Seq.R1_L005.T C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R1_001.fastq.gz 3714824575 FASTQ R1_L005 unaligned CPTAC3 4c0823f5-5c3b-4dff-9ae1-40a8210c1fc3 90f1b27ac35446f74e735895beabe104 { 'aliquot_tag': 'DUP_8a5bb92', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00103.DUP_8a5bb92.RNA-Seq.R2_L005.T C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R2_001.fastq.gz 4342999494 FASTQ R2_L005 unaligned CPTAC3 fad68f1e-fa0e-4d25-a822-600c8a10afbb 61c15974438a5117c6d1c536bb60d3b8 { 'aliquot_tag': 'DUP_8a5bb92', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00103.DUP_8a5bb92.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 5481a331-e2be-43e9-9985-425f3a0c08f9.rna_seq.genomic.gdc_realn.bam 7897833348 BAM genomic harmonized CPTAC3 e17249a9-6cc6-4c11-8514-85095964fa6d 0d658952661819bee94dc205bc563ba9 { 'aliquot_tag': 'DUP_8a5bb92', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00103.DUP_8a5bb92.RNA-Seq.R1_L005.T C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R1_001.fastq.gz 3714824575 FASTQ R1_L005 unaligned CPTAC3 4c0823f5-5c3b-4dff-9ae1-40a8210c1fc3 90f1b27ac35446f74e735895beabe104 { 'aliquot_tag': 'DUP_8a5bb92', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3L-00103.DUP_8a5bb92.RNA-Seq.R2_L005.T C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R2_001.fastq.gz 4342999494 FASTQ R2_L005 unaligned CPTAC3 fad68f1e-fa0e-4d25-a822-600c8a10afbb 61c15974438a5117c6d1c536bb60d3b8 { 'aliquot_tag': 'DUP_8a5bb92', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3L-00103.DUP_8a5bb92.RNA-Seq.transcriptome.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000650008 5481a331-e2be-43e9-9985-425f3a0c08f9.rna_seq.transcriptome.gdc_realn.bam 9700070197 BAM transcriptome harmonized CPTAC3 1895731f-76b8-4ff8-bf35-ad6b31e86054 a3314ebcdd616581488cc465da4570a3 { 'aliquot_tag': 'DUP_8a5bb92', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00103.DUP_ef1d9695.MethArray.Green.T C3L-00103 CCRCC Methylation Array tumor CPT0000650006 204367490030_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1c3e5948-a555-47cc-821c-6ba3f483cda1 1726b54053742517a8a435761183e849 { 'aliquot_tag': 'DUP_ef1d9695', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00103.DUP_ef1d9695.MethArray.Red.T C3L-00103 CCRCC Methylation Array tumor CPT0000650006 204367490030_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 236d7ab1-b6c7-466f-b39a-296ef1f3aa74 5785ed159188887f3851d3b2031e3cc2 { 'aliquot_tag': 'DUP_ef1d9695', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -1294,9 +1700,9 @@ C3L-00103.DUP_ef1d9695.WXS.T.hg38 C3L-00103 CCRCC WXS tumor CPT0000650006 6961ae C3L-00103.DUP_f0e27ea4.miRNA-Seq.T C3L-00103 CCRCC miRNA-Seq tumor CPT0000630009 201209_UNC32-K00270_0265_AHJ55WBBXY_ATCACG_S2_L006_R1_001.unaln.bam 351081478 BAM unaligned CPTAC3 267cdf14-4d04-4ebf-96a2-0e851d84846b 44659ea4f601d2e23cc090ff49e0f33a { 'aliquot_tag': 'DUP_f0e27ea4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00103.DUP_f0e27ea4.miRNA-Seq.T.hg38 C3L-00103 CCRCC miRNA-Seq tumor CPT0000630009 ef153bbc-c4a8-4364-930e-4d81d66878d2_mirnaseq_gdc_realn.bam 385914460 BAM harmonized CPTAC3 0a7a342a-b203-41a2-bf34-47edf859fe66 60305608aab6683698615d9917517070 { 'aliquot_tag': 'DUP_f0e27ea4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00103.DUP_f0e27ea4.RNA-Seq.chimeric.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 a7d61b74-94fc-49c0-845f-7cb51b43e274.rna_seq.chimeric.gdc_realn.bam 175081205 BAM chimeric harmonized CPTAC3 2351b299-dd15-4471-bf13-60c794e52a40 6b3497cc29b2875f8db8f11aad84fbff { 'aliquot_tag': 'DUP_f0e27ea4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00103.DUP_f0e27ea4.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 a7d61b74-94fc-49c0-845f-7cb51b43e274.rna_seq.genomic.gdc_realn.bam 11771985515 BAM genomic harmonized CPTAC3 9030fadc-547a-43f0-8de0-242b9342683e c0bc882bc7500de8f06c84fc0ee8fa9c { 'aliquot_tag': 'DUP_f0e27ea4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00103.DUP_f0e27ea4.RNA-Seq.R1_L004.T C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R1_001.fastq.gz 5570232704 FASTQ R1_L004 unaligned CPTAC3 7dbef68a-aff2-402b-9665-24668fab5908 e8ebfe940dbeb0bb503f4e77fa52aabf { 'aliquot_tag': 'DUP_f0e27ea4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00103.DUP_f0e27ea4.RNA-Seq.R2_L004.T C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R2_001.fastq.gz 6449461194 FASTQ R2_L004 unaligned CPTAC3 7f6794c3-542b-481f-9bfe-dd4781ec781c 2a7d5c3fbce2fb1963a8e8aeca20b1ea { 'aliquot_tag': 'DUP_f0e27ea4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00103.DUP_f0e27ea4.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 a7d61b74-94fc-49c0-845f-7cb51b43e274.rna_seq.genomic.gdc_realn.bam 11771985515 BAM genomic harmonized CPTAC3 d7630516-45ab-4c5c-ab0f-50d6baf7e076 c0bc882bc7500de8f06c84fc0ee8fa9c { 'aliquot_tag': 'DUP_f0e27ea4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00103.DUP_f0e27ea4.RNA-Seq.R1_L004.T C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R1_001.fastq.gz 5570232704 FASTQ R1_L004 unaligned CPTAC3 7dbef68a-aff2-402b-9665-24668fab5908 e8ebfe940dbeb0bb503f4e77fa52aabf { 'aliquot_tag': 'DUP_f0e27ea4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3L-00103.DUP_f0e27ea4.RNA-Seq.R2_L004.T C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R2_001.fastq.gz 6449461194 FASTQ R2_L004 unaligned CPTAC3 7f6794c3-542b-481f-9bfe-dd4781ec781c 2a7d5c3fbce2fb1963a8e8aeca20b1ea { 'aliquot_tag': 'DUP_f0e27ea4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3L-00103.DUP_f0e27ea4.RNA-Seq.transcriptome.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000630009 a7d61b74-94fc-49c0-845f-7cb51b43e274.rna_seq.transcriptome.gdc_realn.bam 14801677590 BAM transcriptome harmonized CPTAC3 551fb0b4-0289-4679-bd68-1337c7812345 016a906d5a57315d9dd5bec128198b8c { 'aliquot_tag': 'DUP_f0e27ea4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00103.MethArray.Green.A C3L-00103 CCRCC Methylation Array tissue_normal CPT0000660014 204930640120_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 3ca87442-f422-4dde-9b07-344f30a6c71f 78816ccd18d772fa3f6e542cb90817a4 { 'aliquot_tag': 'ALQ_5fa8bc28', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00103.MethArray.Green.T C3L-00103 CCRCC Methylation Array tumor CPT0000640008 202184990069_R01C01_Grn.idat 13676226 IDAT Green NA CPTAC3 e5910ae5-bb8f-46c6-a1e8-b8da04dcbbc6 5bc97fd5c55b0cae9549144093da10f3 { 'aliquot_tag': 'ALQ_35c59222', 'gdc_sample_type': 'Primary Tumor' } @@ -1308,12 +1714,12 @@ C3L-00103.miRNA-Seq.T C3L-00103 CCRCC miRNA-Seq tumor CPT0000640005 181113_UNC31 C3L-00103.miRNA-Seq.T.hg38 C3L-00103 CCRCC miRNA-Seq tumor CPT0000640005 ac4fb97a-7871-49d7-a46c-28033dff66af_mirnaseq_gdc_realn.bam 207346466 BAM harmonized CPTAC3 93fe19d1-56af-4f1b-8a4a-af3201a20654 71b06296a692b4e8885f316645cfe559 { 'aliquot_tag': 'ALQ_4b74ee9f', 'gdc_sample_type': 'Primary Tumor' } C3L-00103.RNA-Seq.chimeric.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 b38a2e07-9a29-4893-a2c4-ce5c07799c48.rna_seq.chimeric.gdc_realn.bam 76593002 BAM chimeric harmonized CPTAC3 8714f2bb-8baf-49d0-8a69-302ccd0ec3fb 2dc750fed6e00387c39b6dacd961dbbe { 'aliquot_tag': 'ALQ_a8bdec45', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00103.RNA-Seq.chimeric.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 8f1fd232-59b3-4045-aab4-3441be6bc2f2.rna_seq.chimeric.gdc_realn.bam 98645682 BAM chimeric harmonized CPTAC3 d4f2978b-042b-45bc-a95a-8f6c693461cb c72e5584de5295d70ff3a9de144196e6 { 'aliquot_tag': 'ALQ_4b74ee9f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00103.RNA-Seq.genomic.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 b38a2e07-9a29-4893-a2c4-ce5c07799c48.rna_seq.genomic.gdc_realn.bam 7554731421 BAM genomic harmonized CPTAC3 ecab6489-cd62-4d83-a513-c6ebac6f9b3c 5cd48106a89b724b56a9d21329671c5f { 'aliquot_tag': 'ALQ_a8bdec45', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00103.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 8f1fd232-59b3-4045-aab4-3441be6bc2f2.rna_seq.genomic.gdc_realn.bam 9216583164 BAM genomic harmonized CPTAC3 7dad4ede-9a94-4970-9ac2-98ad58c2c119 f391d7a608f10b4349c465ff36f720a5 { 'aliquot_tag': 'ALQ_4b74ee9f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00103.RNA-Seq.R1_L002.T C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 4211540733 FASTQ R1_L002 unaligned CPTAC3 0432802d-9155-45bd-90b8-8472a758eaa1 bd8f9e5aaa9f273eb3809656319ab627 { 'aliquot_tag': 'ALQ_4b74ee9f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00103.RNA-Seq.R1_L007.A C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 171208_UNC32-K00270_0071_BHN7K5BBXX_GCCAAT_S56_L007_R1_001.fastq.gz 3754354855 FASTQ R1_L007 unaligned CPTAC3 7583c79b-d6d8-4669-b558-0aba2ba67054 bf840fc5bdff84842dce0e0b4fcb06cc { 'aliquot_tag': 'ALQ_a8bdec45', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00103.RNA-Seq.R2_L002.T C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 4462888273 FASTQ R2_L002 unaligned CPTAC3 a37d45d8-1c52-4fd2-906f-d70282c859ec 7a58098bfcbf3697639cd568dd0d3b8e { 'aliquot_tag': 'ALQ_4b74ee9f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00103.RNA-Seq.R2_L007.A C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 171208_UNC32-K00270_0071_BHN7K5BBXX_GCCAAT_S56_L007_R2_001.fastq.gz 4014415458 FASTQ R2_L007 unaligned CPTAC3 de108ae0-884f-4c53-a4ab-40681988ef5c 709f0274b47d76dce3281d7bd07dadb3 { 'aliquot_tag': 'ALQ_a8bdec45', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00103.RNA-Seq.genomic.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 b38a2e07-9a29-4893-a2c4-ce5c07799c48.rna_seq.genomic.gdc_realn.bam 7554731421 BAM genomic harmonized CPTAC3 bed49e6e-f261-496a-9048-1344983fa8d0 5cd48106a89b724b56a9d21329671c5f { 'aliquot_tag': 'ALQ_a8bdec45', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00103.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 8f1fd232-59b3-4045-aab4-3441be6bc2f2.rna_seq.genomic.gdc_realn.bam 9216583164 BAM genomic harmonized CPTAC3 14cf0a4f-2608-4401-9a59-5a8a6b4c3337 f391d7a608f10b4349c465ff36f720a5 { 'aliquot_tag': 'ALQ_4b74ee9f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00103.RNA-Seq.R1_L002.T C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 4211540733 FASTQ R1_L002 unaligned CPTAC3 0432802d-9155-45bd-90b8-8472a758eaa1 bd8f9e5aaa9f273eb3809656319ab627 { 'aliquot_tag': 'ALQ_4b74ee9f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00103.RNA-Seq.R1_L007.A C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 171208_UNC32-K00270_0071_BHN7K5BBXX_GCCAAT_S56_L007_R1_001.fastq.gz 3754354855 FASTQ R1_L007 unaligned CPTAC3 7583c79b-d6d8-4669-b558-0aba2ba67054 bf840fc5bdff84842dce0e0b4fcb06cc { 'aliquot_tag': 'ALQ_a8bdec45', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00103.RNA-Seq.R2_L002.T C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 4462888273 FASTQ R2_L002 unaligned CPTAC3 a37d45d8-1c52-4fd2-906f-d70282c859ec 7a58098bfcbf3697639cd568dd0d3b8e { 'aliquot_tag': 'ALQ_4b74ee9f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00103.RNA-Seq.R2_L007.A C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 171208_UNC32-K00270_0071_BHN7K5BBXX_GCCAAT_S56_L007_R2_001.fastq.gz 4014415458 FASTQ R2_L007 unaligned CPTAC3 de108ae0-884f-4c53-a4ab-40681988ef5c 709f0274b47d76dce3281d7bd07dadb3 { 'aliquot_tag': 'ALQ_a8bdec45', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-00103.RNA-Seq.transcriptome.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal CPT0000660006 b38a2e07-9a29-4893-a2c4-ce5c07799c48.rna_seq.transcriptome.gdc_realn.bam 8856601514 BAM transcriptome harmonized CPTAC3 694339b8-6cf4-4955-adf0-ef4f125c4400 8680231f395525b04f707122b7c4e16e { 'aliquot_tag': 'ALQ_a8bdec45', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00103.RNA-Seq.transcriptome.T.hg38 C3L-00103 CCRCC RNA-Seq tumor CPT0000640005 8f1fd232-59b3-4045-aab4-3441be6bc2f2.rna_seq.transcriptome.gdc_realn.bam 10480913434 BAM transcriptome harmonized CPTAC3 63ce5123-4400-4aa1-a277-a5d6ce5cc6dd 7afea0aa2fd511333c1c7f04bcf3c6d0 { 'aliquot_tag': 'ALQ_4b74ee9f', 'gdc_sample_type': 'Primary Tumor' } C3L-00103.WGS.A C3L-00103 CCRCC WGS tissue_normal CPT0000660009 CPT0000660009.WholeGenome.RP-1303.bam 54363989068 BAM aligned CPTAC3 b9e66dbc-c399-4024-acdf-8491a493dfe9 309ac08e7b1b007766d90b45ed14046a { 'aliquot_tag': 'ALQ_3802f1d4', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1333,9 +1739,9 @@ C3L-00104.MethArray.Red.T C3L-00104 GBM Methylation Array tumor CPT0092440009 20 C3L-00104.miRNA-Seq.T C3L-00104 GBM miRNA-Seq tumor CPT0092440006 180724_UNC32-K00270_0106_BHWK3MBBXX_CATGGC_S10_L007_R1_001.unaln.bam 267308905 BAM unaligned CPTAC3 7efe0301-9ab5-4db5-9d92-6f0f4a564277 a632b5e01e4d74e47153e950a63085e1 { 'aliquot_tag': 'ALQ_1765142c', 'gdc_sample_type': 'Primary Tumor' } C3L-00104.miRNA-Seq.T.hg38 C3L-00104 GBM miRNA-Seq tumor CPT0092440006 9d826494-858e-442a-ab02-cada2c0339fe_mirnaseq_gdc_realn.bam 306396698 BAM harmonized CPTAC3 b9664e75-7a85-4fa3-8a26-58a6468b3f78 e0c824397189b1894afc0b15d47ec89f { 'aliquot_tag': 'ALQ_1765142c', 'gdc_sample_type': 'Primary Tumor' } C3L-00104.RNA-Seq.chimeric.T.hg38 C3L-00104 GBM RNA-Seq tumor CPT0092440006 1fbd55b4-c08b-44b8-940e-6538cc79ef68.rna_seq.chimeric.gdc_realn.bam 59604666 BAM chimeric harmonized CPTAC3 75b03c0d-de34-4c81-a33c-cef6b5401a93 678a6ae5078629d093ee238a8d1d4b47 { 'aliquot_tag': 'ALQ_1765142c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00104.RNA-Seq.genomic.T.hg38 C3L-00104 GBM RNA-Seq tumor CPT0092440006 1fbd55b4-c08b-44b8-940e-6538cc79ef68.rna_seq.genomic.gdc_realn.bam 10833956033 BAM genomic harmonized CPTAC3 63a1cca7-65b4-4873-a03f-2bf3097c398b 23dd61a3b6546156e19a2097a2060eb2 { 'aliquot_tag': 'ALQ_1765142c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00104.RNA-Seq.R1_L005.T C3L-00104 GBM RNA-Seq tumor CPT0092440006 171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4795357750 FASTQ R1_L005 unaligned CPTAC3 a140b753-b805-40f4-90c0-25f726357d04 d1b67d538688145dc8dc7067843e6044 { 'aliquot_tag': 'ALQ_1765142c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00104.RNA-Seq.R2_L005.T C3L-00104 GBM RNA-Seq tumor CPT0092440006 171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 5281943263 FASTQ R2_L005 unaligned CPTAC3 ebd6b26a-bbec-485a-9700-9a26cd0c2402 6342a9ca11a2c8a3a20381683539e56c { 'aliquot_tag': 'ALQ_1765142c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00104.RNA-Seq.genomic.T.hg38 C3L-00104 GBM RNA-Seq tumor CPT0092440006 1fbd55b4-c08b-44b8-940e-6538cc79ef68.rna_seq.genomic.gdc_realn.bam 10833956033 BAM genomic harmonized CPTAC3 964b3452-2c6d-4b43-b091-8692fcfc39b5 23dd61a3b6546156e19a2097a2060eb2 { 'aliquot_tag': 'ALQ_1765142c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00104.RNA-Seq.R1_L005.T C3L-00104 GBM RNA-Seq tumor CPT0092440006 171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4795357750 FASTQ R1_L005 unaligned CPTAC3 a140b753-b805-40f4-90c0-25f726357d04 d1b67d538688145dc8dc7067843e6044 { 'aliquot_tag': 'ALQ_1765142c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00104.RNA-Seq.R2_L005.T C3L-00104 GBM RNA-Seq tumor CPT0092440006 171129_UNC32-K00270_0066_AHM25VBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 5281943263 FASTQ R2_L005 unaligned CPTAC3 ebd6b26a-bbec-485a-9700-9a26cd0c2402 6342a9ca11a2c8a3a20381683539e56c { 'aliquot_tag': 'ALQ_1765142c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-00104.RNA-Seq.transcriptome.T.hg38 C3L-00104 GBM RNA-Seq tumor CPT0092440006 1fbd55b4-c08b-44b8-940e-6538cc79ef68.rna_seq.transcriptome.gdc_realn.bam 11125515114 BAM transcriptome harmonized CPTAC3 0ce6ab22-36f3-4622-a67c-83722a1cc526 8cc801d8986a4ef43487205d7afa371b { 'aliquot_tag': 'ALQ_1765142c', 'gdc_sample_type': 'Primary Tumor' } C3L-00104.WGS.N C3L-00104 GBM WGS blood_normal CPT0093800002 CPT0093800002.WholeGenome.RP-1303.bam 66334077045 BAM aligned CPTAC3 73826e51-96a5-4216-aaf6-ae08fb5c3b49 e64d09a7a550f06482cbdaae9e80cd55 { 'aliquot_tag': 'ALQ_343dbd3a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00104.WGS.N.hg38 C3L-00104 GBM WGS blood_normal CPT0093800002 27b12d40-946d-4fc4-b336-b0edd9bcaa3c_wgs_gdc_realn.bam 96242353366 BAM harmonized CPTAC3 b671161a-35d8-41ec-af05-22e5d61df42a fc7cce96191e17bfba8c2104f1a931b8 { 'aliquot_tag': 'ALQ_343dbd3a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -1350,12 +1756,15 @@ C3L-00136.MethArray.Red.T C3L-00136 UCEC Methylation Array tumor CPT0000730008 2 C3L-00136.miRNA-Seq.T C3L-00136 UCEC miRNA-Seq tumor CPT0000730005 181012_UNC32-K00270_0124_AH223CBBXY_AGTCAA_S34_L002_R1_001.unaln.bam 244139774 BAM unaligned CPTAC3 da03388e-40db-4ed3-bb7e-50c3b2306c16 978ab4784a5681d60629d8f057f66f85 { 'aliquot_tag': 'ALQ_3208e12a', 'gdc_sample_type': 'Primary Tumor' } C3L-00136.miRNA-Seq.T.hg38 C3L-00136 UCEC miRNA-Seq tumor CPT0000730005 4369c1ee-e3bb-4298-9fe1-827c0fba9686_mirnaseq_gdc_realn.bam 268710737 BAM harmonized CPTAC3 504ca518-486f-41f1-b5de-cbae8b527af9 90e2927043f89d4d2d90faeb3444346d { 'aliquot_tag': 'ALQ_3208e12a', 'gdc_sample_type': 'Primary Tumor' } C3L-00136.RNA-Seq.chimeric.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0000730005 70298d42-f2da-4630-8808-b28ea38242ba.rna_seq.chimeric.gdc_realn.bam 175666620 BAM chimeric harmonized CPTAC3 a98b98a7-bc10-4e73-9865-4124fb75cbd2 8a6c6f0ab116748c822bf664832a0048 { 'aliquot_tag': 'ALQ_3208e12a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00136.RNA-Seq.genomic.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0000730005 70298d42-f2da-4630-8808-b28ea38242ba.rna_seq.genomic.gdc_realn.bam 9272924749 BAM genomic harmonized CPTAC3 b38ee37f-0c7a-4585-9d15-4625f515c25f 2adea2f36c6dc07086db2a0257060e2d { 'aliquot_tag': 'ALQ_3208e12a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00136.RNA-Seq.R1_L003.T C3L-00136 UCEC RNA-Seq tumor CPT0000730005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R1_001.fastq.gz 4224214315 FASTQ R1_L003 unaligned CPTAC3 df0e2942-c702-4135-81a0-fbec4439d753 10ec1edb237bcdf561196c4ad4af50eb { 'aliquot_tag': 'ALQ_3208e12a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00136.RNA-Seq.R1_.T C3L-00136 UCEC RNA-Seq tumor CPT0349440001 20210714_P1_D8_WB7988_plate1_S44_R1_001.fastq.gz 6629829146 FASTQ R1_ unaligned CPTAC3 1553b506-f502-4b5b-a7c9-e40af087a0b2 49a91f2118739b0e4e432a6ae53b318b { 'aliquot_tag': 'ALQ_298efc61', 'gdc_sample_type': 'Primary Tumor' } -C3L-00136.RNA-Seq.R2_L003.T C3L-00136 UCEC RNA-Seq tumor CPT0000730005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R2_001.fastq.gz 4672327244 FASTQ R2_L003 unaligned CPTAC3 4e1ad404-4646-4828-91b9-e3c35a4ce505 be0593f8b1d1d93f0bf703554a40a6af { 'aliquot_tag': 'ALQ_3208e12a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00136.RNA-Seq.R2_.T C3L-00136 UCEC RNA-Seq tumor CPT0349440001 20210714_P1_D8_WB7988_plate1_S44_R2_001.fastq.gz 6881683965 FASTQ R2_ unaligned CPTAC3 6565b68d-d783-4345-8e65-399ddce5cd26 8bfa5fe786c8871f07846699459692d4 { 'aliquot_tag': 'ALQ_298efc61', 'gdc_sample_type': 'Primary Tumor' } +C3L-00136.RNA-Seq.chimeric.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0349440001 d5de14af-ed60-4f85-9fc2-8844f0894166.rna_seq.chimeric.gdc_realn.bam 269598174 BAM chimeric harmonized CPTAC3 78842188-850d-4e2d-93b3-0dd82060768b 6a6aca5dd8b153970dcdb995a173da2a { 'aliquot_tag': 'ALQ_298efc61', 'gdc_sample_type': 'Primary Tumor' } +C3L-00136.RNA-Seq.genomic.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0000730005 70298d42-f2da-4630-8808-b28ea38242ba.rna_seq.genomic.gdc_realn.bam 9272924749 BAM genomic harmonized CPTAC3 53fc9e31-2468-418b-8c98-fdb7666e6054 2adea2f36c6dc07086db2a0257060e2d { 'aliquot_tag': 'ALQ_3208e12a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00136.RNA-Seq.genomic.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0349440001 d5de14af-ed60-4f85-9fc2-8844f0894166.rna_seq.genomic.gdc_realn.bam 11235437711 BAM genomic harmonized CPTAC3 30306281-27ff-49fc-8bf7-7e3b3cf6b838 68ead6d0cc1b9bd23eff4cb807b454f5 { 'aliquot_tag': 'ALQ_298efc61', 'gdc_sample_type': 'Primary Tumor' } +C3L-00136.RNA-Seq.R1_L003.T C3L-00136 UCEC RNA-Seq tumor CPT0000730005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R1_001.fastq.gz 4224214315 FASTQ R1_L003 unaligned CPTAC3 df0e2942-c702-4135-81a0-fbec4439d753 10ec1edb237bcdf561196c4ad4af50eb { 'aliquot_tag': 'ALQ_3208e12a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00136.RNA-Seq.R2_L003.T C3L-00136 UCEC RNA-Seq tumor CPT0000730005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L003_R2_001.fastq.gz 4672327244 FASTQ R2_L003 unaligned CPTAC3 4e1ad404-4646-4828-91b9-e3c35a4ce505 be0593f8b1d1d93f0bf703554a40a6af { 'aliquot_tag': 'ALQ_3208e12a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00136.RNA-Seq.T C3L-00136 UCEC RNA-Seq tumor CPT0349440001 20210714_P1_D8_WB7988_plate1_S44_R1_001.fastq.gz 6629829146 FASTQ unaligned CPTAC3 1553b506-f502-4b5b-a7c9-e40af087a0b2 49a91f2118739b0e4e432a6ae53b318b +C3L-00136.RNA-Seq.T C3L-00136 UCEC RNA-Seq tumor CPT0349440001 20210714_P1_D8_WB7988_plate1_S44_R2_001.fastq.gz 6881683965 FASTQ unaligned CPTAC3 6565b68d-d783-4345-8e65-399ddce5cd26 8bfa5fe786c8871f07846699459692d4 C3L-00136.RNA-Seq.transcriptome.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0000730005 70298d42-f2da-4630-8808-b28ea38242ba.rna_seq.transcriptome.gdc_realn.bam 9940078016 BAM transcriptome harmonized CPTAC3 685522d2-ca12-44de-8ead-63ad2bff0b24 b89a9f0885347cd89891d129447ceacc { 'aliquot_tag': 'ALQ_3208e12a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00136.RNA-Seq.transcriptome.T.hg38 C3L-00136 UCEC RNA-Seq tumor CPT0349440001 d5de14af-ed60-4f85-9fc2-8844f0894166.rna_seq.transcriptome.gdc_realn.bam 7793206924 BAM transcriptome harmonized CPTAC3 09f381fa-96f3-41bd-9793-9106df966350 0925fde68037946778a2abc6a9234d52 { 'aliquot_tag': 'ALQ_298efc61', 'gdc_sample_type': 'Primary Tumor' } C3L-00136.WGS.N C3L-00136 UCEC WGS blood_normal CPT0003860002 CPT0003860002.WholeGenome.RP-1303.bam 62399756235 BAM aligned CPTAC3 5a4abbc1-e0fb-441b-9d0a-1d52ba000b9a 6cd815872e7347b4c49ad5d52dbfbe59 { 'aliquot_tag': 'ALQ_a43253b1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00136.WGS.N.hg38 C3L-00136 UCEC WGS blood_normal CPT0003860002 2a17380f-bcb1-4de3-8934-af1d4b914892_gdc_realn.bam 90461500957 BAM harmonized CPTAC3 df7dc177-6120-49ae-9046-fffbeed04583 0dcfadb09e3d2a15cb225497de5bba76 { 'aliquot_tag': 'ALQ_a43253b1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00136.WGS.T C3L-00136 UCEC WGS tumor CPT0000730008 CPT0000730008.WholeGenome.RP-1303.bam 68745944247 BAM aligned CPTAC3 04d5974a-d29b-44f0-a707-11fa0c67e3b0 698ae074161617677e28efbffb8e2b95 { 'aliquot_tag': 'ALQ_4cb99d97', 'gdc_sample_type': 'Primary Tumor' } @@ -1369,12 +1778,15 @@ C3L-00137.MethArray.Red.T C3L-00137 UCEC Methylation Array tumor CPT0002010008 2 C3L-00137.miRNA-Seq.T C3L-00137 UCEC miRNA-Seq tumor CPT0002010005 181012_UNC32-K00270_0124_AH223CBBXY_AGTTCC_S35_L002_R1_001.unaln.bam 284600384 BAM unaligned CPTAC3 4644ebff-133e-4c08-a7ee-a57888d4acf0 f95a96deccc91a13cebe2cd72b736c7d { 'aliquot_tag': 'ALQ_c25293db', 'gdc_sample_type': 'Primary Tumor' } C3L-00137.miRNA-Seq.T.hg38 C3L-00137 UCEC miRNA-Seq tumor CPT0002010005 75ac0619-947a-427b-a53f-71e121a7ec8f_mirnaseq_gdc_realn.bam 310978156 BAM harmonized CPTAC3 436ca6d8-561c-4ac3-8077-30d1aa510e0d cdd53adfa9360f2c9e524156c1700b14 { 'aliquot_tag': 'ALQ_c25293db', 'gdc_sample_type': 'Primary Tumor' } C3L-00137.RNA-Seq.chimeric.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0002010005 02f204de-780f-4854-aab1-1dc003163d2e.rna_seq.chimeric.gdc_realn.bam 111661327 BAM chimeric harmonized CPTAC3 c0c4168b-aa72-43d4-bd3b-88448f1bc2a9 3b8b17c9ece1cc2da127c458e94c9928 { 'aliquot_tag': 'ALQ_c25293db', 'gdc_sample_type': 'Primary Tumor' } -C3L-00137.RNA-Seq.genomic.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0002010005 02f204de-780f-4854-aab1-1dc003163d2e.rna_seq.genomic.gdc_realn.bam 7612430365 BAM genomic harmonized CPTAC3 1dafe668-cd58-453c-89dc-9d7d7e200018 e8483ebe6c8c82c6f2033e8e66990e97 { 'aliquot_tag': 'ALQ_c25293db', 'gdc_sample_type': 'Primary Tumor' } -C3L-00137.RNA-Seq.R1_L003.T C3L-00137 UCEC RNA-Seq tumor CPT0002010005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGAAA_S12_L003_R1_001.fastq.gz 3659451903 FASTQ R1_L003 unaligned CPTAC3 8fcdd6a1-a7c7-41b5-8b44-e41f2237b236 c009ef4a718199e56b76b314b6252819 { 'aliquot_tag': 'ALQ_c25293db', 'gdc_sample_type': 'Primary Tumor' } -C3L-00137.RNA-Seq.R1_.T C3L-00137 UCEC RNA-Seq tumor CPT0349450001 20210723_P2_H8_WB7988-plate2_S92_R1_001.fastq.gz 2473873691 FASTQ R1_ unaligned CPTAC3 4bb31dc9-9c0d-4032-a05c-10997413d28d 5d551e696736fb3eb8b398cccf421ff6 { 'aliquot_tag': 'ALQ_14eed5d1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00137.RNA-Seq.R2_L003.T C3L-00137 UCEC RNA-Seq tumor CPT0002010005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGAAA_S12_L003_R2_001.fastq.gz 3840298846 FASTQ R2_L003 unaligned CPTAC3 2bea607d-6eb2-4583-90d7-7823a3d8a572 7264544de78960e1773bb35f652fb4bf { 'aliquot_tag': 'ALQ_c25293db', 'gdc_sample_type': 'Primary Tumor' } -C3L-00137.RNA-Seq.R2_.T C3L-00137 UCEC RNA-Seq tumor CPT0349450001 20210723_P2_H8_WB7988-plate2_S92_R2_001.fastq.gz 2521759872 FASTQ R2_ unaligned CPTAC3 b3448565-fb30-4f54-a941-ecae99962a3c 9af4e5313ae1916bf0b5975ed14387a1 { 'aliquot_tag': 'ALQ_14eed5d1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00137.RNA-Seq.chimeric.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0349450001 437791c8-3239-4983-8f7c-b05de583e0f4.rna_seq.chimeric.gdc_realn.bam 90356480 BAM chimeric harmonized CPTAC3 28b1e297-b833-40fd-8185-a477c4d05d93 e7be30e5ab401c8017e94af84cc2a48b { 'aliquot_tag': 'ALQ_14eed5d1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00137.RNA-Seq.genomic.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0002010005 02f204de-780f-4854-aab1-1dc003163d2e.rna_seq.genomic.gdc_realn.bam 7612430365 BAM genomic harmonized CPTAC3 cf4cc61c-5abc-4329-bad3-fd4fcca47f5c e8483ebe6c8c82c6f2033e8e66990e97 { 'aliquot_tag': 'ALQ_c25293db', 'gdc_sample_type': 'Primary Tumor' } +C3L-00137.RNA-Seq.genomic.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0349450001 437791c8-3239-4983-8f7c-b05de583e0f4.rna_seq.genomic.gdc_realn.bam 4523089566 BAM genomic harmonized CPTAC3 46e4de25-8450-4523-89b0-df1c6c38385f d76ff2e2c50320a3e09b7ee107d93a5e { 'aliquot_tag': 'ALQ_14eed5d1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00137.RNA-Seq.R1_L003.T C3L-00137 UCEC RNA-Seq tumor CPT0002010005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGAAA_S12_L003_R1_001.fastq.gz 3659451903 FASTQ R1_L003 unaligned CPTAC3 8fcdd6a1-a7c7-41b5-8b44-e41f2237b236 c009ef4a718199e56b76b314b6252819 { 'aliquot_tag': 'ALQ_c25293db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00137.RNA-Seq.R2_L003.T C3L-00137 UCEC RNA-Seq tumor CPT0002010005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGAAA_S12_L003_R2_001.fastq.gz 3840298846 FASTQ R2_L003 unaligned CPTAC3 2bea607d-6eb2-4583-90d7-7823a3d8a572 7264544de78960e1773bb35f652fb4bf { 'aliquot_tag': 'ALQ_c25293db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00137.RNA-Seq.T C3L-00137 UCEC RNA-Seq tumor CPT0349450001 20210723_P2_H8_WB7988-plate2_S92_R1_001.fastq.gz 2473873691 FASTQ unaligned CPTAC3 4bb31dc9-9c0d-4032-a05c-10997413d28d 5d551e696736fb3eb8b398cccf421ff6 +C3L-00137.RNA-Seq.T C3L-00137 UCEC RNA-Seq tumor CPT0349450001 20210723_P2_H8_WB7988-plate2_S92_R2_001.fastq.gz 2521759872 FASTQ unaligned CPTAC3 b3448565-fb30-4f54-a941-ecae99962a3c 9af4e5313ae1916bf0b5975ed14387a1 C3L-00137.RNA-Seq.transcriptome.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0002010005 02f204de-780f-4854-aab1-1dc003163d2e.rna_seq.transcriptome.gdc_realn.bam 8146343649 BAM transcriptome harmonized CPTAC3 5ef83376-8d2d-4e0a-b00e-2d91055b9e28 a38961ce7edc46a01dc2802243d5c7c0 { 'aliquot_tag': 'ALQ_c25293db', 'gdc_sample_type': 'Primary Tumor' } +C3L-00137.RNA-Seq.transcriptome.T.hg38 C3L-00137 UCEC RNA-Seq tumor CPT0349450001 437791c8-3239-4983-8f7c-b05de583e0f4.rna_seq.transcriptome.gdc_realn.bam 2109065484 BAM transcriptome harmonized CPTAC3 ff0ded32-92b7-496e-b118-6629dd80e594 9c177dc1784db7bf3cb4e31827b9078b { 'aliquot_tag': 'ALQ_14eed5d1', 'gdc_sample_type': 'Primary Tumor' } C3L-00137.WGS.N C3L-00137 UCEC WGS blood_normal CPT0003870002 CPT0003870002.WholeGenome.RP-1303.bam 59288908302 BAM aligned CPTAC3 1dc96ac6-f13c-421b-8cc6-68d58d4e740c 67c64d41efaf035653e96fbae2319415 { 'aliquot_tag': 'ALQ_99527a01', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00137.WGS.N.hg38 C3L-00137 UCEC WGS blood_normal CPT0003870002 552d7534-1fd1-490b-8751-9dff1bf55569_gdc_realn.bam 86049366669 BAM harmonized CPTAC3 3183b3b5-5fdf-4f74-928e-7493bd04c1eb 412f5e349680da4215538cf003320448 { 'aliquot_tag': 'ALQ_99527a01', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00137.WGS.T C3L-00137 UCEC WGS tumor CPT0002010008 CPT0002010008.WholeGenome.RP-1303.bam 63923614074 BAM aligned CPTAC3 09368818-a40e-486e-9fa4-789a50ea0afd 77c613ebbee6db766b556aa5fb904a05 { 'aliquot_tag': 'ALQ_bce3ef66', 'gdc_sample_type': 'Primary Tumor' } @@ -1388,12 +1800,15 @@ C3L-00139.MethArray.Red.T C3L-00139 UCEC Methylation Array tumor CPT0001850005 2 C3L-00139.miRNA-Seq.T C3L-00139 UCEC miRNA-Seq tumor CPT0001850008 181012_UNC32-K00270_0124_AH223CBBXY_GCCAAT_S27_L002_R1_001.unaln.bam 289948718 BAM unaligned CPTAC3 df7fd901-8ef2-4d72-9e1b-108dbf4d1c39 7efc9cd0865709ff73c3aa42bed2e969 { 'aliquot_tag': 'ALQ_94d8d156', 'gdc_sample_type': 'Primary Tumor' } C3L-00139.miRNA-Seq.T.hg38 C3L-00139 UCEC miRNA-Seq tumor CPT0001850008 c11f3a98-b4e3-4323-882a-10ca43c5bbef_mirnaseq_gdc_realn.bam 313021111 BAM harmonized CPTAC3 1ec286c9-2013-489e-955b-ca46f413f278 1619bf13678b2fdd27da45224bf43b46 { 'aliquot_tag': 'ALQ_94d8d156', 'gdc_sample_type': 'Primary Tumor' } C3L-00139.RNA-Seq.chimeric.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0001850008 b69edb6d-71e5-4461-98d5-c03424cb4958.rna_seq.chimeric.gdc_realn.bam 107371273 BAM chimeric harmonized CPTAC3 0ddfbffa-bc3f-4443-b29e-86af7d423392 629e90443a81de28c7c571b51740bb64 { 'aliquot_tag': 'ALQ_94d8d156', 'gdc_sample_type': 'Primary Tumor' } -C3L-00139.RNA-Seq.genomic.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0001850008 b69edb6d-71e5-4461-98d5-c03424cb4958.rna_seq.genomic.gdc_realn.bam 8354592829 BAM genomic harmonized CPTAC3 4b3824b7-6442-45ae-8eb7-daaea8d2535c 18c52f45717f8ef16caa2bd4d275f5f5 { 'aliquot_tag': 'ALQ_94d8d156', 'gdc_sample_type': 'Primary Tumor' } -C3L-00139.RNA-Seq.R1_L001.T C3L-00139 UCEC RNA-Seq tumor CPT0001850008 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L001_R1_001.fastq.gz 4174922373 FASTQ R1_L001 unaligned CPTAC3 7785d5a1-a60d-41f9-86f3-e4ebc100704c 685efdd279536e1199088a3dda3f9e9a { 'aliquot_tag': 'ALQ_94d8d156', 'gdc_sample_type': 'Primary Tumor' } -C3L-00139.RNA-Seq.R1_.T C3L-00139 UCEC RNA-Seq tumor CPT0349470001 20210723_P2_C8_WB7988-plate2_S32_R1_001.fastq.gz 6140390107 FASTQ R1_ unaligned CPTAC3 39beb660-c454-472e-ba02-0cd8b7fa200c b0bee4991162326e9fae8d0b44039007 { 'aliquot_tag': 'ALQ_6e2e86b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00139.RNA-Seq.R2_L001.T C3L-00139 UCEC RNA-Seq tumor CPT0001850008 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L001_R2_001.fastq.gz 4628430585 FASTQ R2_L001 unaligned CPTAC3 90ced367-0342-4739-93b2-4b1a4af800c4 160e900b66558d503da084fd6a46d424 { 'aliquot_tag': 'ALQ_94d8d156', 'gdc_sample_type': 'Primary Tumor' } -C3L-00139.RNA-Seq.R2_.T C3L-00139 UCEC RNA-Seq tumor CPT0349470001 20210723_P2_C8_WB7988-plate2_S32_R2_001.fastq.gz 6349933131 FASTQ R2_ unaligned CPTAC3 408d7d83-438d-4766-843d-7675fc0860ea d317bc0847480fe86036b4a090cf9a84 { 'aliquot_tag': 'ALQ_6e2e86b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00139.RNA-Seq.chimeric.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0349470001 8ad84e83-5204-4144-8f98-a245b5eeddcf.rna_seq.chimeric.gdc_realn.bam 240722743 BAM chimeric harmonized CPTAC3 69123dcb-aa0e-41ab-a0db-a4a36e9fd3ca 23c1658888e971f244b4b7204995dabb { 'aliquot_tag': 'ALQ_6e2e86b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00139.RNA-Seq.genomic.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0001850008 b69edb6d-71e5-4461-98d5-c03424cb4958.rna_seq.genomic.gdc_realn.bam 8354592829 BAM genomic harmonized CPTAC3 3e33dc26-ec91-497e-8e25-c3ceb2b49b72 18c52f45717f8ef16caa2bd4d275f5f5 { 'aliquot_tag': 'ALQ_94d8d156', 'gdc_sample_type': 'Primary Tumor' } +C3L-00139.RNA-Seq.genomic.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0349470001 8ad84e83-5204-4144-8f98-a245b5eeddcf.rna_seq.genomic.gdc_realn.bam 11072108238 BAM genomic harmonized CPTAC3 cabe9716-5bae-452c-ae7b-da0166a75f28 e9875cc63f4483ea49638e23e2622519 { 'aliquot_tag': 'ALQ_6e2e86b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00139.RNA-Seq.R1_L001.T C3L-00139 UCEC RNA-Seq tumor CPT0001850008 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L001_R1_001.fastq.gz 4174922373 FASTQ R1_L001 unaligned CPTAC3 7785d5a1-a60d-41f9-86f3-e4ebc100704c 685efdd279536e1199088a3dda3f9e9a { 'aliquot_tag': 'ALQ_94d8d156', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00139.RNA-Seq.R2_L001.T C3L-00139 UCEC RNA-Seq tumor CPT0001850008 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L001_R2_001.fastq.gz 4628430585 FASTQ R2_L001 unaligned CPTAC3 90ced367-0342-4739-93b2-4b1a4af800c4 160e900b66558d503da084fd6a46d424 { 'aliquot_tag': 'ALQ_94d8d156', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00139.RNA-Seq.T C3L-00139 UCEC RNA-Seq tumor CPT0349470001 20210723_P2_C8_WB7988-plate2_S32_R1_001.fastq.gz 6140390107 FASTQ unaligned CPTAC3 39beb660-c454-472e-ba02-0cd8b7fa200c b0bee4991162326e9fae8d0b44039007 +C3L-00139.RNA-Seq.T C3L-00139 UCEC RNA-Seq tumor CPT0349470001 20210723_P2_C8_WB7988-plate2_S32_R2_001.fastq.gz 6349933131 FASTQ unaligned CPTAC3 408d7d83-438d-4766-843d-7675fc0860ea d317bc0847480fe86036b4a090cf9a84 C3L-00139.RNA-Seq.transcriptome.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0001850008 b69edb6d-71e5-4461-98d5-c03424cb4958.rna_seq.transcriptome.gdc_realn.bam 9728983723 BAM transcriptome harmonized CPTAC3 1ceb9e47-84ff-4b0e-9bcc-aaff32d03022 86321e186a34b9c554d072eec520f84d { 'aliquot_tag': 'ALQ_94d8d156', 'gdc_sample_type': 'Primary Tumor' } +C3L-00139.RNA-Seq.transcriptome.T.hg38 C3L-00139 UCEC RNA-Seq tumor CPT0349470001 8ad84e83-5204-4144-8f98-a245b5eeddcf.rna_seq.transcriptome.gdc_realn.bam 5026049957 BAM transcriptome harmonized CPTAC3 fbbfebbf-ae9a-4bc7-acf7-ecfd9758bde9 45eef9f4884db1410eedaf26902a0c43 { 'aliquot_tag': 'ALQ_6e2e86b1', 'gdc_sample_type': 'Primary Tumor' } C3L-00139.WGS.N C3L-00139 UCEC WGS blood_normal CPT0003950002 CPT0003950002.WholeGenome.RP-1303.bam 136523255484 BAM aligned CPTAC3 c2c55bf8-07d6-4aeb-9170-e1cc2d2d62b5 0d514f28a8fbf15fce7d56ed39937aaa { 'aliquot_tag': 'ALQ_28cefac4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00139.WGS.N.hg38 C3L-00139 UCEC WGS blood_normal CPT0003950002 f72de443-e927-4cbf-a81d-3c906af657db_gdc_realn.bam 196412539714 BAM harmonized CPTAC3 eaab07a2-6162-4605-a1ba-8ff3a0bebb60 961dccc950b8be247a26dfa2246aa50c { 'aliquot_tag': 'ALQ_28cefac4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00139.WGS.T C3L-00139 UCEC WGS tumor CPT0001850005 CPT0001850005.WholeGenome.RP-1303.bam 136209044545 BAM aligned CPTAC3 e61d5d13-7a19-4187-981e-18c1afcd1a85 2b3748571fad2a48f4adbc2d9f9923c1 { 'aliquot_tag': 'ALQ_ea69adeb', 'gdc_sample_type': 'Primary Tumor' } @@ -1412,12 +1827,12 @@ C3L-00140.miRNA-Seq.T C3L-00140 LUAD miRNA-Seq tumor CPT0001800008 181012_UNC32- C3L-00140.miRNA-Seq.T.hg38 C3L-00140 LUAD miRNA-Seq tumor CPT0001800008 3f67f903-8a57-48c9-aa0e-893412ed7cbb_mirnaseq_gdc_realn.bam 260201510 BAM harmonized CPTAC3 9df1d4ed-80aa-45d3-a0db-dfbc1c021a6a 9a2631ced61503f080e0e4a8486d6c10 { 'aliquot_tag': 'ALQ_5c385e26', 'gdc_sample_type': 'Primary Tumor' } C3L-00140.RNA-Seq.chimeric.A.hg38 C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 42108400-02cf-410d-a900-0e58d8573b71.rna_seq.chimeric.gdc_realn.bam 117389400 BAM chimeric harmonized CPTAC3 b7920d02-c9a1-4ca5-8e50-087fb93d372b e74bf0fd22d6f5e41b69860a72c6ea34 { 'aliquot_tag': 'ALQ_86e05a91', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00140.RNA-Seq.chimeric.T.hg38 C3L-00140 LUAD RNA-Seq tumor CPT0001800008 5b68fb35-1fff-4960-aaf6-82c7555dab56.rna_seq.chimeric.gdc_realn.bam 75470455 BAM chimeric harmonized CPTAC3 0f76a2e8-989c-450d-8600-5127c7fcc773 8eb563c994adfd9951a8250fc1d4a608 { 'aliquot_tag': 'ALQ_5c385e26', 'gdc_sample_type': 'Primary Tumor' } -C3L-00140.RNA-Seq.genomic.A.hg38 C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 42108400-02cf-410d-a900-0e58d8573b71.rna_seq.genomic.gdc_realn.bam 7301326470 BAM genomic harmonized CPTAC3 33a416d1-bc67-4b48-bed5-4e9e82c1f698 efede67a5bcc5458735c5fba81841194 { 'aliquot_tag': 'ALQ_86e05a91', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00140.RNA-Seq.genomic.T.hg38 C3L-00140 LUAD RNA-Seq tumor CPT0001800008 5b68fb35-1fff-4960-aaf6-82c7555dab56.rna_seq.genomic.gdc_realn.bam 8138447938 BAM genomic harmonized CPTAC3 04656094-89d6-46b8-8074-3319adc5148e 139f1c404f329a93d9732bd3804cc7e7 { 'aliquot_tag': 'ALQ_5c385e26', 'gdc_sample_type': 'Primary Tumor' } -C3L-00140.RNA-Seq.R1_L001.T C3L-00140 LUAD RNA-Seq tumor CPT0001800008 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 3960123527 FASTQ R1_L001 unaligned CPTAC3 84aeb05a-3f3e-4ef9-9ef5-85bd7a955626 0105a3319f5b8fb0ded08e10ad7ef8db { 'aliquot_tag': 'ALQ_5c385e26', 'gdc_sample_type': 'Primary Tumor' } -C3L-00140.RNA-Seq.R1_L002.A C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L002_R1_001.fastq.gz 3535142168 FASTQ R1_L002 unaligned CPTAC3 c22122d5-c707-4b0a-873b-03bafa9d6373 9c9e92db4f169af477887e07c19feab9 { 'aliquot_tag': 'ALQ_86e05a91', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00140.RNA-Seq.R2_L001.T C3L-00140 LUAD RNA-Seq tumor CPT0001800008 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 4439192184 FASTQ R2_L001 unaligned CPTAC3 7bd80abf-7ebf-475a-a875-e75809deada5 3c2483b293b6b483331fdcb7b6d5a91a { 'aliquot_tag': 'ALQ_5c385e26', 'gdc_sample_type': 'Primary Tumor' } -C3L-00140.RNA-Seq.R2_L002.A C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L002_R2_001.fastq.gz 3822989925 FASTQ R2_L002 unaligned CPTAC3 48e9e1aa-da46-4ef8-8bb3-849c1e096850 889a044f9506aa166fed6d97523748e5 { 'aliquot_tag': 'ALQ_86e05a91', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00140.RNA-Seq.genomic.A.hg38 C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 42108400-02cf-410d-a900-0e58d8573b71.rna_seq.genomic.gdc_realn.bam 7301326470 BAM genomic harmonized CPTAC3 c3cfc7fb-bca6-44e5-98d3-4155b1cb83c0 efede67a5bcc5458735c5fba81841194 { 'aliquot_tag': 'ALQ_86e05a91', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00140.RNA-Seq.genomic.T.hg38 C3L-00140 LUAD RNA-Seq tumor CPT0001800008 5b68fb35-1fff-4960-aaf6-82c7555dab56.rna_seq.genomic.gdc_realn.bam 8138447938 BAM genomic harmonized CPTAC3 149a23ec-044f-472c-8ec1-97c4567135c9 139f1c404f329a93d9732bd3804cc7e7 { 'aliquot_tag': 'ALQ_5c385e26', 'gdc_sample_type': 'Primary Tumor' } +C3L-00140.RNA-Seq.R1_L001.T C3L-00140 LUAD RNA-Seq tumor CPT0001800008 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 3960123527 FASTQ R1_L001 unaligned CPTAC3 84aeb05a-3f3e-4ef9-9ef5-85bd7a955626 0105a3319f5b8fb0ded08e10ad7ef8db { 'aliquot_tag': 'ALQ_5c385e26', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00140.RNA-Seq.R1_L002.A C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L002_R1_001.fastq.gz 3535142168 FASTQ R1_L002 unaligned CPTAC3 c22122d5-c707-4b0a-873b-03bafa9d6373 9c9e92db4f169af477887e07c19feab9 { 'aliquot_tag': 'ALQ_86e05a91', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-00140.RNA-Seq.R2_L001.T C3L-00140 LUAD RNA-Seq tumor CPT0001800008 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 4439192184 FASTQ R2_L001 unaligned CPTAC3 7bd80abf-7ebf-475a-a875-e75809deada5 3c2483b293b6b483331fdcb7b6d5a91a { 'aliquot_tag': 'ALQ_5c385e26', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00140.RNA-Seq.R2_L002.A C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L002_R2_001.fastq.gz 3822989925 FASTQ R2_L002 unaligned CPTAC3 48e9e1aa-da46-4ef8-8bb3-849c1e096850 889a044f9506aa166fed6d97523748e5 { 'aliquot_tag': 'ALQ_86e05a91', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } C3L-00140.RNA-Seq.transcriptome.A.hg38 C3L-00140 LUAD RNA-Seq tissue_normal CPT0001810006 42108400-02cf-410d-a900-0e58d8573b71.rna_seq.transcriptome.gdc_realn.bam 9271734756 BAM transcriptome harmonized CPTAC3 accd7efa-5523-4480-a8bc-1fd3163368fc 5ba4bbc7190789d01393edab64ed1a7d { 'aliquot_tag': 'ALQ_86e05a91', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00140.RNA-Seq.transcriptome.T.hg38 C3L-00140 LUAD RNA-Seq tumor CPT0001800008 5b68fb35-1fff-4960-aaf6-82c7555dab56.rna_seq.transcriptome.gdc_realn.bam 11583695064 BAM transcriptome harmonized CPTAC3 f10d0d29-2675-419c-b5b6-37fc19a2e310 eac5b541283b97a5f100ee77934cb129 { 'aliquot_tag': 'ALQ_5c385e26', 'gdc_sample_type': 'Primary Tumor' } C3L-00140.WGS.A C3L-00140 LUAD WGS tissue_normal CPT0001810009 CPT0001810009.WholeGenome.RP-1303.bam 52698744240 BAM aligned CPTAC3 d64d4ac4-c440-4bcf-8a64-4f7eeae51bbd 64dbbd61d8fa6f6f22796665570170e9 { 'aliquot_tag': 'ALQ_165f4700', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1437,12 +1852,15 @@ C3L-00143.MethArray.Red.T C3L-00143 UCEC Methylation Array tumor CPT0001910012 2 C3L-00143.miRNA-Seq.T C3L-00143 UCEC miRNA-Seq tumor CPT0001910008 181012_UNC32-K00270_0124_AH223CBBXY_CAGATC_S28_L002_R1_001.unaln.bam 249275022 BAM unaligned CPTAC3 f2254efa-2cbc-4b04-b8bb-e9bb070e2f31 63ac8d415b094a3db4e010fd59ba084e { 'aliquot_tag': 'ALQ_aa04a433', 'gdc_sample_type': 'Primary Tumor' } C3L-00143.miRNA-Seq.T.hg38 C3L-00143 UCEC miRNA-Seq tumor CPT0001910008 861eae2d-bd5e-403c-babf-f7555093434d_mirnaseq_gdc_realn.bam 280086138 BAM harmonized CPTAC3 b340f64d-954f-4d24-9a84-b191d7811a4b 921fdf3c0c18d50f927390f2e8da8b53 { 'aliquot_tag': 'ALQ_aa04a433', 'gdc_sample_type': 'Primary Tumor' } C3L-00143.RNA-Seq.chimeric.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0001910008 b1827d34-b574-4d96-9096-9f364ceffb75.rna_seq.chimeric.gdc_realn.bam 51352905 BAM chimeric harmonized CPTAC3 34b84b15-62e6-4122-92f5-d99a5d017e2f ea9cf55871025d1e4a2385f0c1680d47 { 'aliquot_tag': 'ALQ_aa04a433', 'gdc_sample_type': 'Primary Tumor' } -C3L-00143.RNA-Seq.genomic.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0001910008 b1827d34-b574-4d96-9096-9f364ceffb75.rna_seq.genomic.gdc_realn.bam 7045068204 BAM genomic harmonized CPTAC3 7a64f7c3-0039-4bb6-a248-4cfa03db835c ab4d6f65d6b03ca7c2272a856435237f { 'aliquot_tag': 'ALQ_aa04a433', 'gdc_sample_type': 'Primary Tumor' } -C3L-00143.RNA-Seq.R1_L001.T C3L-00143 UCEC RNA-Seq tumor CPT0001910008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 3552566535 FASTQ R1_L001 unaligned CPTAC3 6412838b-2f70-4b14-a6ee-3c7baca09fb0 1ddb4365965318c7d264d91d7d67860b { 'aliquot_tag': 'ALQ_aa04a433', 'gdc_sample_type': 'Primary Tumor' } -C3L-00143.RNA-Seq.R1_.T C3L-00143 UCEC RNA-Seq tumor CPT0349490001 20210729_P3_G7_WB7988-Plate3_S79_R1_001.fastq.gz 7457668481 FASTQ R1_ unaligned CPTAC3 01750b81-0d8b-4e20-97c8-5f0b9187fb22 b45c11f5e6e4654a9d65025c33f9276f { 'aliquot_tag': 'ALQ_d11e38d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-00143.RNA-Seq.R2_L001.T C3L-00143 UCEC RNA-Seq tumor CPT0001910008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 3901719535 FASTQ R2_L001 unaligned CPTAC3 5d0a26e0-2739-4f38-9350-c685b44911d3 5477ff74d86c35fea3c93c1f862e1b8b { 'aliquot_tag': 'ALQ_aa04a433', 'gdc_sample_type': 'Primary Tumor' } -C3L-00143.RNA-Seq.R2_.T C3L-00143 UCEC RNA-Seq tumor CPT0349490001 20210729_P3_G7_WB7988-Plate3_S79_R2_001.fastq.gz 7778507933 FASTQ R2_ unaligned CPTAC3 28cd52a0-bd1f-498b-a9f3-e8127475b8bd 393f2fc66b4598f5324e1cfe4e57475f { 'aliquot_tag': 'ALQ_d11e38d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-00143.RNA-Seq.chimeric.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0349490001 c4a225df-d431-43ab-aabc-41ca5fc64560.rna_seq.chimeric.gdc_realn.bam 261111897 BAM chimeric harmonized CPTAC3 f10dfb3b-9686-41f9-a8cd-7301eb9f4ede 299b6d38b4e028ef48d859c46b876c94 { 'aliquot_tag': 'ALQ_d11e38d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-00143.RNA-Seq.genomic.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0001910008 b1827d34-b574-4d96-9096-9f364ceffb75.rna_seq.genomic.gdc_realn.bam 7045068204 BAM genomic harmonized CPTAC3 2f222b61-da36-4714-bc07-031f55557c67 ab4d6f65d6b03ca7c2272a856435237f { 'aliquot_tag': 'ALQ_aa04a433', 'gdc_sample_type': 'Primary Tumor' } +C3L-00143.RNA-Seq.genomic.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0349490001 c4a225df-d431-43ab-aabc-41ca5fc64560.rna_seq.genomic.gdc_realn.bam 11869301324 BAM genomic harmonized CPTAC3 b5b88846-22aa-4d49-b490-79b77807abbe cb02fa95d3bde1311a098890bd138b0e { 'aliquot_tag': 'ALQ_d11e38d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-00143.RNA-Seq.R1_L001.T C3L-00143 UCEC RNA-Seq tumor CPT0001910008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 3552566535 FASTQ R1_L001 unaligned CPTAC3 6412838b-2f70-4b14-a6ee-3c7baca09fb0 1ddb4365965318c7d264d91d7d67860b { 'aliquot_tag': 'ALQ_aa04a433', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00143.RNA-Seq.R2_L001.T C3L-00143 UCEC RNA-Seq tumor CPT0001910008 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 3901719535 FASTQ R2_L001 unaligned CPTAC3 5d0a26e0-2739-4f38-9350-c685b44911d3 5477ff74d86c35fea3c93c1f862e1b8b { 'aliquot_tag': 'ALQ_aa04a433', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00143.RNA-Seq.T C3L-00143 UCEC RNA-Seq tumor CPT0349490001 20210729_P3_G7_WB7988-Plate3_S79_R1_001.fastq.gz 7457668481 FASTQ unaligned CPTAC3 01750b81-0d8b-4e20-97c8-5f0b9187fb22 b45c11f5e6e4654a9d65025c33f9276f +C3L-00143.RNA-Seq.T C3L-00143 UCEC RNA-Seq tumor CPT0349490001 20210729_P3_G7_WB7988-Plate3_S79_R2_001.fastq.gz 7778507933 FASTQ unaligned CPTAC3 28cd52a0-bd1f-498b-a9f3-e8127475b8bd 393f2fc66b4598f5324e1cfe4e57475f C3L-00143.RNA-Seq.transcriptome.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0001910008 b1827d34-b574-4d96-9096-9f364ceffb75.rna_seq.transcriptome.gdc_realn.bam 8263952666 BAM transcriptome harmonized CPTAC3 18404ddf-3ff3-4e0c-a4b3-fd80ff89373f fad98e7a896fc01fe6e8e8711c2df657 { 'aliquot_tag': 'ALQ_aa04a433', 'gdc_sample_type': 'Primary Tumor' } +C3L-00143.RNA-Seq.transcriptome.T.hg38 C3L-00143 UCEC RNA-Seq tumor CPT0349490001 c4a225df-d431-43ab-aabc-41ca5fc64560.rna_seq.transcriptome.gdc_realn.bam 6161381906 BAM transcriptome harmonized CPTAC3 3a6787f9-2ba0-4e35-9633-8eef881efa00 7ed7a3c85e98b74ba8a16b3582df00db { 'aliquot_tag': 'ALQ_d11e38d0', 'gdc_sample_type': 'Primary Tumor' } C3L-00143.WGS.N C3L-00143 UCEC WGS blood_normal CPT0003970002 CPT0003970002.WholeGenome.RP-1303.bam 138410437612 BAM aligned CPTAC3 686e9641-ea5a-490c-b3ca-4373e0e6a76b 476cb8af9a6ffa7f48972486618caa1a { 'aliquot_tag': 'ALQ_520ea9a4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00143.WGS.N.hg38 C3L-00143 UCEC WGS blood_normal CPT0003970002 c043b586-b3c2-4a81-a4f3-ccc22a2ec00d_gdc_realn.bam 200359369959 BAM harmonized CPTAC3 d4c330b5-d7f2-4f29-9002-e10479caa5ad e306de77507c37f3872e79ec7664c427 { 'aliquot_tag': 'ALQ_520ea9a4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00143.WGS.T C3L-00143 UCEC WGS tumor CPT0001910012 CPT0001910012.WholeGenome.RP-1303.bam 128638627228 BAM aligned CPTAC3 f9ce1adc-bd1f-4a2e-89b2-5f30c1a76ac8 e61e966ed26bcd3b8492b1941807a647 { 'aliquot_tag': 'ALQ_53ca7c6c', 'gdc_sample_type': 'Primary Tumor' } @@ -1461,12 +1879,12 @@ C3L-00144.miRNA-Seq.T C3L-00144 LUAD miRNA-Seq tumor CPT0001960008 181012_UNC32- C3L-00144.miRNA-Seq.T.hg38 C3L-00144 LUAD miRNA-Seq tumor CPT0001960008 7dd724fb-ad0a-4d76-adfc-ecccf45752bc_mirnaseq_gdc_realn.bam 264972717 BAM harmonized CPTAC3 139f48fc-cfb2-4876-adfc-264eea88e74a c0fe54405eba3dd655316380fee1b017 { 'aliquot_tag': 'ALQ_18247823', 'gdc_sample_type': 'Primary Tumor' } C3L-00144.RNA-Seq.chimeric.A.hg38 C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 4cc002a7-d565-4ba3-940b-0c8eee65d985.rna_seq.chimeric.gdc_realn.bam 100871369 BAM chimeric harmonized CPTAC3 3ded4e49-7c01-40d5-b443-9a3b3cab9663 863bc8c7c1d3670bddda8d3ad0f4478f { 'aliquot_tag': 'ALQ_c2fc7c94', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00144.RNA-Seq.chimeric.T.hg38 C3L-00144 LUAD RNA-Seq tumor CPT0001960008 be0f2790-ed0e-48b4-b989-380c8e49df0f.rna_seq.chimeric.gdc_realn.bam 114006005 BAM chimeric harmonized CPTAC3 da8024b3-3e22-4bf7-8ee4-193fb095020c ded7164ce2269bc1309da46027c44f69 { 'aliquot_tag': 'ALQ_18247823', 'gdc_sample_type': 'Primary Tumor' } -C3L-00144.RNA-Seq.genomic.A.hg38 C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 4cc002a7-d565-4ba3-940b-0c8eee65d985.rna_seq.genomic.gdc_realn.bam 6655943379 BAM genomic harmonized CPTAC3 88f7605c-f20f-42a9-95e8-ecf3c0cd9e85 1af60ea42c7122c84d115094c484514a { 'aliquot_tag': 'ALQ_c2fc7c94', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00144.RNA-Seq.genomic.T.hg38 C3L-00144 LUAD RNA-Seq tumor CPT0001960008 be0f2790-ed0e-48b4-b989-380c8e49df0f.rna_seq.genomic.gdc_realn.bam 8564131775 BAM genomic harmonized CPTAC3 66bbc7f6-0bfb-443d-a750-fc4fa0f20c24 ba7afdac0b78eeffb2d7a34421a31556 { 'aliquot_tag': 'ALQ_18247823', 'gdc_sample_type': 'Primary Tumor' } -C3L-00144.RNA-Seq.R1_L002.A C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L002_R1_001.fastq.gz 2962348349 FASTQ R1_L002 unaligned CPTAC3 28a0f947-13c5-4516-bf1f-5f19964a78fa 34dcc56269a61dc0274d1dee29d2c0cb { 'aliquot_tag': 'ALQ_c2fc7c94', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00144.RNA-Seq.R1_L003.T C3L-00144 LUAD RNA-Seq tumor CPT0001960008 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L003_R1_001.fastq.gz 3544821982 FASTQ R1_L003 unaligned CPTAC3 e54b8655-54e3-4933-9ad2-5a09910426fd 2313681b18e646152debb07a68c4f100 { 'aliquot_tag': 'ALQ_18247823', 'gdc_sample_type': 'Primary Tumor' } -C3L-00144.RNA-Seq.R2_L002.A C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L002_R2_001.fastq.gz 3226200962 FASTQ R2_L002 unaligned CPTAC3 61ddf30e-431b-4e87-b774-8ae1070bc7fe 00a9e8853ddc534b37bae5067162e6d3 { 'aliquot_tag': 'ALQ_c2fc7c94', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00144.RNA-Seq.R2_L003.T C3L-00144 LUAD RNA-Seq tumor CPT0001960008 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L003_R2_001.fastq.gz 3887899247 FASTQ R2_L003 unaligned CPTAC3 6357ac54-9bdc-4da6-960b-0acd8769b0ee d5424c031c15b5dedd67f4626e7b5393 { 'aliquot_tag': 'ALQ_18247823', 'gdc_sample_type': 'Primary Tumor' } +C3L-00144.RNA-Seq.genomic.A.hg38 C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 4cc002a7-d565-4ba3-940b-0c8eee65d985.rna_seq.genomic.gdc_realn.bam 6655943379 BAM genomic harmonized CPTAC3 671e72d6-fa5e-4dc0-a8ee-7119a73d13c4 1af60ea42c7122c84d115094c484514a { 'aliquot_tag': 'ALQ_c2fc7c94', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00144.RNA-Seq.genomic.T.hg38 C3L-00144 LUAD RNA-Seq tumor CPT0001960008 be0f2790-ed0e-48b4-b989-380c8e49df0f.rna_seq.genomic.gdc_realn.bam 8564131775 BAM genomic harmonized CPTAC3 3feaeb70-1588-48cc-b0fe-e7ae3c4bb37b ba7afdac0b78eeffb2d7a34421a31556 { 'aliquot_tag': 'ALQ_18247823', 'gdc_sample_type': 'Primary Tumor' } +C3L-00144.RNA-Seq.R1_L002.A C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L002_R1_001.fastq.gz 2962348349 FASTQ R1_L002 unaligned CPTAC3 28a0f947-13c5-4516-bf1f-5f19964a78fa 34dcc56269a61dc0274d1dee29d2c0cb { 'aliquot_tag': 'ALQ_c2fc7c94', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-00144.RNA-Seq.R1_L003.T C3L-00144 LUAD RNA-Seq tumor CPT0001960008 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L003_R1_001.fastq.gz 3544821982 FASTQ R1_L003 unaligned CPTAC3 e54b8655-54e3-4933-9ad2-5a09910426fd 2313681b18e646152debb07a68c4f100 { 'aliquot_tag': 'ALQ_18247823', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00144.RNA-Seq.R2_L002.A C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L002_R2_001.fastq.gz 3226200962 FASTQ R2_L002 unaligned CPTAC3 61ddf30e-431b-4e87-b774-8ae1070bc7fe 00a9e8853ddc534b37bae5067162e6d3 { 'aliquot_tag': 'ALQ_c2fc7c94', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-00144.RNA-Seq.R2_L003.T C3L-00144 LUAD RNA-Seq tumor CPT0001960008 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L003_R2_001.fastq.gz 3887899247 FASTQ R2_L003 unaligned CPTAC3 6357ac54-9bdc-4da6-960b-0acd8769b0ee d5424c031c15b5dedd67f4626e7b5393 { 'aliquot_tag': 'ALQ_18247823', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-00144.RNA-Seq.transcriptome.A.hg38 C3L-00144 LUAD RNA-Seq tissue_normal CPT0001970006 4cc002a7-d565-4ba3-940b-0c8eee65d985.rna_seq.transcriptome.gdc_realn.bam 7179348975 BAM transcriptome harmonized CPTAC3 a2f79991-45cc-4e93-b89f-03dfd1900ffb 0d2722c44a3352ba7caa14735b7d77fe { 'aliquot_tag': 'ALQ_c2fc7c94', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00144.RNA-Seq.transcriptome.T.hg38 C3L-00144 LUAD RNA-Seq tumor CPT0001960008 be0f2790-ed0e-48b4-b989-380c8e49df0f.rna_seq.transcriptome.gdc_realn.bam 8594160186 BAM transcriptome harmonized CPTAC3 d09135b5-ac0a-4868-8bc7-cb56166044ca 1e2e1fdc1e51a8a44d3986a5d6883ff1 { 'aliquot_tag': 'ALQ_18247823', 'gdc_sample_type': 'Primary Tumor' } C3L-00144.Targeted.T C3L-00144 LUAD Targeted Sequencing tumor CPT0001960012 CPT0001960012.CustomSelection.RP-1303.PDO-18786.bam 4481877861 BAM aligned CPTAC3 21651781-960c-4a4a-9351-4242240d62f0 2c090902ae0dac5aa3c38b217296d010 { 'aliquot_tag': 'ALQ_e1eaa07c', 'gdc_sample_type': 'Primary Tumor' } @@ -1488,12 +1906,15 @@ C3L-00145.MethArray.Red.T C3L-00145 UCEC Methylation Array tumor CPT0002630009 2 C3L-00145.miRNA-Seq.T C3L-00145 UCEC miRNA-Seq tumor CPT0002630006 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L005_R1_001.unaln.bam 243627542 BAM unaligned CPTAC3 35c93f3e-930a-4658-ba59-6e71efca8a88 579223c53b0772c4a6e46825806fa86b { 'aliquot_tag': 'ALQ_f7c2721c', 'gdc_sample_type': 'Primary Tumor' } C3L-00145.miRNA-Seq.T.hg38 C3L-00145 UCEC miRNA-Seq tumor CPT0002630006 2aa1a7c3-626f-4c8a-9717-4c101ce92488_mirnaseq_gdc_realn.bam 267471215 BAM harmonized CPTAC3 55dd35be-653a-4264-9e05-8d76e5f48ac2 e84c96315ae154d2e10ec3b9c966d774 { 'aliquot_tag': 'ALQ_f7c2721c', 'gdc_sample_type': 'Primary Tumor' } C3L-00145.RNA-Seq.chimeric.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0002630006 4e22718d-479f-4de9-991b-40c08ab98ed0.rna_seq.chimeric.gdc_realn.bam 58395710 BAM chimeric harmonized CPTAC3 6b60c10d-bbc9-4c50-96f1-9e9254fed33e 5d4b4360c2a8d5508b6a09b6656c6f05 { 'aliquot_tag': 'ALQ_f7c2721c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00145.RNA-Seq.genomic.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0002630006 4e22718d-479f-4de9-991b-40c08ab98ed0.rna_seq.genomic.gdc_realn.bam 7803407511 BAM genomic harmonized CPTAC3 3a9d952b-2186-42a1-ba1e-4c6b1f464f7b 8a793556abbef128133ba019e38185a5 { 'aliquot_tag': 'ALQ_f7c2721c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00145.RNA-Seq.R1_L005.T C3L-00145 UCEC RNA-Seq tumor CPT0002630006 170823_UNC31-K00269_0075_AHLCW5BBXX_GAGTGG_S19_L005_R1_001.fastq.gz 3740187142 FASTQ R1_L005 unaligned CPTAC3 1f5e3577-dbc5-46f7-8615-86887337a97e 484030a7cb73d048b6ecb091260c81d6 { 'aliquot_tag': 'ALQ_f7c2721c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00145.RNA-Seq.R1_.T C3L-00145 UCEC RNA-Seq tumor CPT0349520001 20210723_P2_H4_WB7988-plate2_S88_R1_001.fastq.gz 1981326537 FASTQ R1_ unaligned CPTAC3 80557067-49bd-4bd8-a44a-e919497268c7 e978c7283516463c702547d497a5dd21 { 'aliquot_tag': 'ALQ_6d92da64', 'gdc_sample_type': 'Primary Tumor' } -C3L-00145.RNA-Seq.R2_L005.T C3L-00145 UCEC RNA-Seq tumor CPT0002630006 170823_UNC31-K00269_0075_AHLCW5BBXX_GAGTGG_S19_L005_R2_001.fastq.gz 3942541227 FASTQ R2_L005 unaligned CPTAC3 1c7f3fd1-e321-45b0-8e70-7ecad29c0558 8ecc8f9dbb15c787054ed43bbedccf3a { 'aliquot_tag': 'ALQ_f7c2721c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00145.RNA-Seq.R2_.T C3L-00145 UCEC RNA-Seq tumor CPT0349520001 20210723_P2_H4_WB7988-plate2_S88_R2_001.fastq.gz 2006846413 FASTQ R2_ unaligned CPTAC3 18fd6f3b-dab4-40ae-8d60-b7cd1f40630c 75595d5bd74e85a61e10df775a59a9cf { 'aliquot_tag': 'ALQ_6d92da64', 'gdc_sample_type': 'Primary Tumor' } +C3L-00145.RNA-Seq.chimeric.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0349520001 f71229d0-d648-46db-833d-f72192a54d32.rna_seq.chimeric.gdc_realn.bam 82564088 BAM chimeric harmonized CPTAC3 b4472987-ea37-47d6-af91-cfa94a88f9a2 61bfa50ea190b17a6fc0d9e5620666fd { 'aliquot_tag': 'ALQ_6d92da64', 'gdc_sample_type': 'Primary Tumor' } +C3L-00145.RNA-Seq.genomic.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0002630006 4e22718d-479f-4de9-991b-40c08ab98ed0.rna_seq.genomic.gdc_realn.bam 7803407511 BAM genomic harmonized CPTAC3 a6470d86-374c-473d-89de-d6962e349a2f 8a793556abbef128133ba019e38185a5 { 'aliquot_tag': 'ALQ_f7c2721c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00145.RNA-Seq.genomic.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0349520001 f71229d0-d648-46db-833d-f72192a54d32.rna_seq.genomic.gdc_realn.bam 3957129161 BAM genomic harmonized CPTAC3 3a1f66ea-6e19-4df6-b8f4-39c09b17fffa 720c71bbbd7fa6d13b47103bce893f11 { 'aliquot_tag': 'ALQ_6d92da64', 'gdc_sample_type': 'Primary Tumor' } +C3L-00145.RNA-Seq.R1_L005.T C3L-00145 UCEC RNA-Seq tumor CPT0002630006 170823_UNC31-K00269_0075_AHLCW5BBXX_GAGTGG_S19_L005_R1_001.fastq.gz 3740187142 FASTQ R1_L005 unaligned CPTAC3 1f5e3577-dbc5-46f7-8615-86887337a97e 484030a7cb73d048b6ecb091260c81d6 { 'aliquot_tag': 'ALQ_f7c2721c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00145.RNA-Seq.R2_L005.T C3L-00145 UCEC RNA-Seq tumor CPT0002630006 170823_UNC31-K00269_0075_AHLCW5BBXX_GAGTGG_S19_L005_R2_001.fastq.gz 3942541227 FASTQ R2_L005 unaligned CPTAC3 1c7f3fd1-e321-45b0-8e70-7ecad29c0558 8ecc8f9dbb15c787054ed43bbedccf3a { 'aliquot_tag': 'ALQ_f7c2721c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-00145.RNA-Seq.T C3L-00145 UCEC RNA-Seq tumor CPT0349520001 20210723_P2_H4_WB7988-plate2_S88_R1_001.fastq.gz 1981326537 FASTQ unaligned CPTAC3 80557067-49bd-4bd8-a44a-e919497268c7 e978c7283516463c702547d497a5dd21 +C3L-00145.RNA-Seq.T C3L-00145 UCEC RNA-Seq tumor CPT0349520001 20210723_P2_H4_WB7988-plate2_S88_R2_001.fastq.gz 2006846413 FASTQ unaligned CPTAC3 18fd6f3b-dab4-40ae-8d60-b7cd1f40630c 75595d5bd74e85a61e10df775a59a9cf C3L-00145.RNA-Seq.transcriptome.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0002630006 4e22718d-479f-4de9-991b-40c08ab98ed0.rna_seq.transcriptome.gdc_realn.bam 9643676586 BAM transcriptome harmonized CPTAC3 89a55d41-0845-4ae3-af77-71332c8f0439 5ef30bac9c03eeb20f60984c24e49503 { 'aliquot_tag': 'ALQ_f7c2721c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00145.RNA-Seq.transcriptome.T.hg38 C3L-00145 UCEC RNA-Seq tumor CPT0349520001 f71229d0-d648-46db-833d-f72192a54d32.rna_seq.transcriptome.gdc_realn.bam 1690175994 BAM transcriptome harmonized CPTAC3 7f7f5aa7-6adb-4d26-a93f-63dc1fc32d7e 0ae39af3cea1b56379c0505d45a4526f { 'aliquot_tag': 'ALQ_6d92da64', 'gdc_sample_type': 'Primary Tumor' } C3L-00145.WGS.N C3L-00145 UCEC WGS blood_normal CPT0007990002 CPT0007990002.WholeGenome.RP-1303.bam 73827837704 BAM aligned CPTAC3 1515821d-e980-4795-a258-2e1e59a319d9 f25869629024f240ade1096f784d4d85 { 'aliquot_tag': 'ALQ_197133d6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00145.WGS.N.hg38 C3L-00145 UCEC WGS blood_normal CPT0007990002 2a8535dc-eb5a-4517-a7be-6d52d87a4233_gdc_realn.bam 108256083425 BAM harmonized CPTAC3 f0c2d7a9-4236-4c49-84bc-2c02169339dd 457fc2f840d99e8b669ec4ceee002fb6 { 'aliquot_tag': 'ALQ_197133d6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00145.WGS.T C3L-00145 UCEC WGS tumor CPT0002630009 CPT0002630009.WholeGenome.RP-1303.bam 66801846019 BAM aligned CPTAC3 aae699b2-cff6-4ec0-a1ea-6ce71f6938f0 aeef4b290a3103de1563386752e8d9b6 { 'aliquot_tag': 'ALQ_677d6f8d', 'gdc_sample_type': 'Primary Tumor' } @@ -1507,12 +1928,15 @@ C3L-00156.MethArray.Red.T C3L-00156 UCEC Methylation Array tumor CPT0002080008 2 C3L-00156.miRNA-Seq.T C3L-00156 UCEC miRNA-Seq tumor CPT0002080005 181012_UNC32-K00270_0124_AH223CBBXY_ATGTCA_S36_L002_R1_001.unaln.bam 211426620 BAM unaligned CPTAC3 b4fdcc29-5a4e-4c6b-b551-c367014c0e18 4cbbff5e427d5620b9d43201505dfd89 { 'aliquot_tag': 'ALQ_cf42f1aa', 'gdc_sample_type': 'Primary Tumor' } C3L-00156.miRNA-Seq.T.hg38 C3L-00156 UCEC miRNA-Seq tumor CPT0002080005 2c10a2cf-1c4e-4111-a771-a7bbbead738a_mirnaseq_gdc_realn.bam 230696492 BAM harmonized CPTAC3 b4cfa8a8-b8d2-4869-bd7d-8781e67f3ce0 d29fa73fd73f8f66a60af7e8e47e9fd7 { 'aliquot_tag': 'ALQ_cf42f1aa', 'gdc_sample_type': 'Primary Tumor' } C3L-00156.RNA-Seq.chimeric.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0002080005 a30fbe4d-3d15-46e6-acba-58a35c22965b.rna_seq.chimeric.gdc_realn.bam 112082522 BAM chimeric harmonized CPTAC3 69f98007-da86-4db7-bf22-7aefe7b7181c 797b5a2f6f2ea4784d181b89fdeffc78 { 'aliquot_tag': 'ALQ_cf42f1aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-00156.RNA-Seq.chimeric.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0349540001 c329e10b-efa3-4caa-a792-18a4df50fc8c.rna_seq.chimeric.gdc_realn.bam 110716280 BAM chimeric harmonized CPTAC3 db78ec5c-802d-49f1-b998-d01777f5f648 75c9a87b4556c9471145188d7c91597e { 'aliquot_tag': 'ALQ_e2d22fc4', 'gdc_sample_type': 'Primary Tumor' } C3L-00156.RNA-Seq.genomic.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0002080005 a30fbe4d-3d15-46e6-acba-58a35c22965b.rna_seq.genomic.gdc_realn.bam 10561241753 BAM genomic harmonized CPTAC3 7306c0f3-d6e9-4173-8442-e6813a64ec38 c1396dd8504b7d7c7cb3f2350197bac4 { 'aliquot_tag': 'ALQ_cf42f1aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00156.RNA-Seq.R1_L004.T C3L-00156 UCEC RNA-Seq tumor CPT0002080005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGGCC_S16_L004_R1_001.fastq.gz 4437257327 FASTQ R1_L004 unaligned CPTAC3 e1abab26-3582-4e7c-bbea-7cadbd0e36e5 48caf33885a7d3a87b5acc4083377d02 { 'aliquot_tag': 'ALQ_cf42f1aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00156.RNA-Seq.R1_.T C3L-00156 UCEC RNA-Seq tumor CPT0349540001 20210723_P2_D5_WB7988-plate2_S41_R1_001.fastq.gz 3527121504 FASTQ R1_ unaligned CPTAC3 4329d865-b7eb-4a69-81c6-ad985d3d8903 9f2f9f3386d71dc6b034f56bbe3fa235 { 'aliquot_tag': 'ALQ_e2d22fc4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00156.RNA-Seq.R2_L004.T C3L-00156 UCEC RNA-Seq tumor CPT0002080005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGGCC_S16_L004_R2_001.fastq.gz 4884637755 FASTQ R2_L004 unaligned CPTAC3 b92610bf-9bcd-4f26-948d-448f963586de b483162d57628860eed6a9f135a94c01 { 'aliquot_tag': 'ALQ_cf42f1aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00156.RNA-Seq.R2_.T C3L-00156 UCEC RNA-Seq tumor CPT0349540001 20210723_P2_D5_WB7988-plate2_S41_R2_001.fastq.gz 3566698561 FASTQ R2_ unaligned CPTAC3 bab3f4fd-3c7b-4243-bb17-d654045d57e8 39c4e15b74a2257424b7530bb0a158b4 { 'aliquot_tag': 'ALQ_e2d22fc4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00156.RNA-Seq.genomic.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0349540001 c329e10b-efa3-4caa-a792-18a4df50fc8c.rna_seq.genomic.gdc_realn.bam 6292376760 BAM genomic harmonized CPTAC3 c0948887-e85e-431a-81a3-e3e92132f4c9 3fc3425935f673e9c31ae5f2ac13bb0e { 'aliquot_tag': 'ALQ_e2d22fc4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00156.RNA-Seq.R1_L004.T C3L-00156 UCEC RNA-Seq tumor CPT0002080005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGGCC_S16_L004_R1_001.fastq.gz 4437257327 FASTQ R1_L004 unaligned CPTAC3 e1abab26-3582-4e7c-bbea-7cadbd0e36e5 48caf33885a7d3a87b5acc4083377d02 { 'aliquot_tag': 'ALQ_cf42f1aa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00156.RNA-Seq.R2_L004.T C3L-00156 UCEC RNA-Seq tumor CPT0002080005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTGGCC_S16_L004_R2_001.fastq.gz 4884637755 FASTQ R2_L004 unaligned CPTAC3 b92610bf-9bcd-4f26-948d-448f963586de b483162d57628860eed6a9f135a94c01 { 'aliquot_tag': 'ALQ_cf42f1aa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00156.RNA-Seq.T C3L-00156 UCEC RNA-Seq tumor CPT0349540001 20210723_P2_D5_WB7988-plate2_S41_R1_001.fastq.gz 3527121504 FASTQ unaligned CPTAC3 4329d865-b7eb-4a69-81c6-ad985d3d8903 9f2f9f3386d71dc6b034f56bbe3fa235 +C3L-00156.RNA-Seq.T C3L-00156 UCEC RNA-Seq tumor CPT0349540001 20210723_P2_D5_WB7988-plate2_S41_R2_001.fastq.gz 3566698561 FASTQ unaligned CPTAC3 bab3f4fd-3c7b-4243-bb17-d654045d57e8 39c4e15b74a2257424b7530bb0a158b4 C3L-00156.RNA-Seq.transcriptome.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0002080005 a30fbe4d-3d15-46e6-acba-58a35c22965b.rna_seq.transcriptome.gdc_realn.bam 10205256389 BAM transcriptome harmonized CPTAC3 00276494-28e3-4f1e-85e0-0e855aba0c68 6e9636d90137e19a2377084d527d55ef { 'aliquot_tag': 'ALQ_cf42f1aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-00156.RNA-Seq.transcriptome.T.hg38 C3L-00156 UCEC RNA-Seq tumor CPT0349540001 c329e10b-efa3-4caa-a792-18a4df50fc8c.rna_seq.transcriptome.gdc_realn.bam 3028439459 BAM transcriptome harmonized CPTAC3 697d309e-54f6-42b8-a399-4a4f6e828068 eabb5e6153cf2209285c60d9dbe51758 { 'aliquot_tag': 'ALQ_e2d22fc4', 'gdc_sample_type': 'Primary Tumor' } C3L-00156.WGS.N C3L-00156 UCEC WGS blood_normal CPT0004340002 CPT0004340002.WholeGenome.RP-1303.bam 64458479411 BAM aligned CPTAC3 e9941a9d-81c4-4a22-a8aa-b7a1adb43156 35594b8cdb9e5ec5d6a99cd5dad28f5b { 'aliquot_tag': 'ALQ_7192ce9c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00156.WGS.N.hg38 C3L-00156 UCEC WGS blood_normal CPT0004340002 ee8e3dc1-6ec7-44fe-9e3e-a7455e9920ac_gdc_realn.bam 92962148927 BAM harmonized CPTAC3 75786b70-9e4a-42a8-892a-29812f7b0e20 601a4c556a29bfb9cfecd253f92d9d69 { 'aliquot_tag': 'ALQ_7192ce9c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00156.WGS.T C3L-00156 UCEC WGS tumor CPT0002080008 CPT0002080008.WholeGenome.RP-1303.bam 62963631276 BAM aligned CPTAC3 537b957d-4f95-4ad5-b28e-744db945d383 2d882bf397c3b1790da6b6a534a9051f { 'aliquot_tag': 'ALQ_b1f38d17', 'gdc_sample_type': 'Primary Tumor' } @@ -1526,9 +1950,9 @@ C3L-00157.MethArray.Red.T C3L-00157 UCEC Methylation Array tumor CPT0002560009 2 C3L-00157.miRNA-Seq.T C3L-00157 UCEC miRNA-Seq tumor CPT0002560006 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L005_R1_001.unaln.bam 202820559 BAM unaligned CPTAC3 f42b0e6b-1e37-4212-a152-2462ef8c955b 1e81da7ab4910d2a25db82a5674fb14d { 'aliquot_tag': 'ALQ_b9b68fc2', 'gdc_sample_type': 'Primary Tumor' } C3L-00157.miRNA-Seq.T.hg38 C3L-00157 UCEC miRNA-Seq tumor CPT0002560006 9d3713aa-1a35-4fb2-a27d-3fb86e7d9bc2_mirnaseq_gdc_realn.bam 238921381 BAM harmonized CPTAC3 132d4d66-6d64-421f-9ab6-69cedeac8534 3b98268049877f142e4b77a95c4ec690 { 'aliquot_tag': 'ALQ_b9b68fc2', 'gdc_sample_type': 'Primary Tumor' } C3L-00157.RNA-Seq.chimeric.T.hg38 C3L-00157 UCEC RNA-Seq tumor CPT0002560006 c8468f07-8fb7-491e-921d-702810c25656.rna_seq.chimeric.gdc_realn.bam 47268822 BAM chimeric harmonized CPTAC3 1a5bccc4-cfca-4c36-9a39-2b916471e74b 3fa7e84703b1c1d9605564e76ae49eec { 'aliquot_tag': 'ALQ_b9b68fc2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00157.RNA-Seq.genomic.T.hg38 C3L-00157 UCEC RNA-Seq tumor CPT0002560006 c8468f07-8fb7-491e-921d-702810c25656.rna_seq.genomic.gdc_realn.bam 8627951661 BAM genomic harmonized CPTAC3 5d84f21b-845b-4386-861a-17ea87ffd065 5744079ff4be1f9110f13a45f51c7703 { 'aliquot_tag': 'ALQ_b9b68fc2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00157.RNA-Seq.R1_L005.T C3L-00157 UCEC RNA-Seq tumor CPT0002560006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGTACG_S17_L005_R1_001.fastq.gz 3814953845 FASTQ R1_L005 unaligned CPTAC3 ea887db4-6dcb-4e75-b57f-5a0211fb4ba6 d7e9b2f56f5b5e69aa62f487307d7ce0 { 'aliquot_tag': 'ALQ_b9b68fc2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00157.RNA-Seq.R2_L005.T C3L-00157 UCEC RNA-Seq tumor CPT0002560006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGTACG_S17_L005_R2_001.fastq.gz 4116740879 FASTQ R2_L005 unaligned CPTAC3 9dd491c3-794c-4f2d-8010-512c90360b1b fc2f0a6bee442fd9b05968d573b1d857 { 'aliquot_tag': 'ALQ_b9b68fc2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00157.RNA-Seq.genomic.T.hg38 C3L-00157 UCEC RNA-Seq tumor CPT0002560006 c8468f07-8fb7-491e-921d-702810c25656.rna_seq.genomic.gdc_realn.bam 8627951661 BAM genomic harmonized CPTAC3 d80aa7d8-88e0-4ab7-b34c-e30326ccc253 5744079ff4be1f9110f13a45f51c7703 { 'aliquot_tag': 'ALQ_b9b68fc2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00157.RNA-Seq.R1_L005.T C3L-00157 UCEC RNA-Seq tumor CPT0002560006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGTACG_S17_L005_R1_001.fastq.gz 3814953845 FASTQ R1_L005 unaligned CPTAC3 ea887db4-6dcb-4e75-b57f-5a0211fb4ba6 d7e9b2f56f5b5e69aa62f487307d7ce0 { 'aliquot_tag': 'ALQ_b9b68fc2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00157.RNA-Seq.R2_L005.T C3L-00157 UCEC RNA-Seq tumor CPT0002560006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGTACG_S17_L005_R2_001.fastq.gz 4116740879 FASTQ R2_L005 unaligned CPTAC3 9dd491c3-794c-4f2d-8010-512c90360b1b fc2f0a6bee442fd9b05968d573b1d857 { 'aliquot_tag': 'ALQ_b9b68fc2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-00157.RNA-Seq.transcriptome.T.hg38 C3L-00157 UCEC RNA-Seq tumor CPT0002560006 c8468f07-8fb7-491e-921d-702810c25656.rna_seq.transcriptome.gdc_realn.bam 12180357979 BAM transcriptome harmonized CPTAC3 79a571cb-a6a3-40e7-8281-d0961e68cfc1 ca52263291ba490e3cc2fef897f00a3c { 'aliquot_tag': 'ALQ_b9b68fc2', 'gdc_sample_type': 'Primary Tumor' } C3L-00157.WGS.N C3L-00157 UCEC WGS blood_normal CPT0008040002 CPT0008040002.WholeGenome.RP-1303.bam 59993449555 BAM aligned CPTAC3 37c97c6f-16a9-49fd-b229-51906e952b33 16404cea8037b10973f3faa6c7c3e3ee { 'aliquot_tag': 'ALQ_30a6d646', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00157.WGS.N.hg38 C3L-00157 UCEC WGS blood_normal CPT0008040002 8e4d5871-709e-49fa-aa5c-ab5e9060fca3_gdc_realn.bam 87407497914 BAM harmonized CPTAC3 4679e568-2b87-4f05-a67c-9d52f0143e05 fe81d6c5d2a21142600676627c4d0fdb { 'aliquot_tag': 'ALQ_30a6d646', 'gdc_sample_type': 'Blood Derived Normal' } @@ -1543,12 +1967,15 @@ C3L-00161.MethArray.Red.T C3L-00161 UCEC Methylation Array tumor CPT0070380007 2 C3L-00161.miRNA-Seq.T C3L-00161 UCEC miRNA-Seq tumor CPT0070380010 181012_UNC32-K00270_0124_AH223CBBXY_CAACTA_S48_L008_R1_001.unaln.bam 246787224 BAM unaligned CPTAC3 9532979f-9a23-423a-b904-341f8bcb4d9d 11e9d4efddd42798a09776554b2c486a { 'aliquot_tag': 'ALQ_bdfd5efa', 'gdc_sample_type': 'Primary Tumor' } C3L-00161.miRNA-Seq.T.hg38 C3L-00161 UCEC miRNA-Seq tumor CPT0070380010 bc9b2cdc-e66c-4b21-93a4-f83a2f61c5e2_mirnaseq_gdc_realn.bam 274065847 BAM harmonized CPTAC3 f584b14f-36cc-495c-895b-3d7b0c2ff1ee 9df5f3564aa5f5ba22ea7a8492376f86 { 'aliquot_tag': 'ALQ_bdfd5efa', 'gdc_sample_type': 'Primary Tumor' } C3L-00161.RNA-Seq.chimeric.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070380010 241cd472-0a64-4149-ae3c-fb3675bffb9b.rna_seq.chimeric.gdc_realn.bam 178156830 BAM chimeric harmonized CPTAC3 454cf1f1-2367-479e-9f36-0e7862ca9aad b5701cdbae5c2c32fb9208a9bbfdf2ba { 'aliquot_tag': 'ALQ_bdfd5efa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00161.RNA-Seq.genomic.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070380010 241cd472-0a64-4149-ae3c-fb3675bffb9b.rna_seq.genomic.gdc_realn.bam 8293221158 BAM genomic harmonized CPTAC3 2f148e1c-bf5f-4b1e-b7f8-4df7fb87a454 1b6a6afc42c8350ba2f80b3ea899e230 { 'aliquot_tag': 'ALQ_bdfd5efa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00161.RNA-Seq.R1_L008.T C3L-00161 UCEC RNA-Seq tumor CPT0070380010 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4123381187 FASTQ R1_L008 unaligned CPTAC3 9e12b685-c46a-431b-bb9e-a90c6f7892ee 02437f3da56bd74fbe3cd4f416b6be0a { 'aliquot_tag': 'ALQ_bdfd5efa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00161.RNA-Seq.R1_.T C3L-00161 UCEC RNA-Seq tumor CPT0070620001 20210729_P3_H9_WB7988-Plate3_S93_R1_001.fastq.gz 3660244988 FASTQ R1_ unaligned CPTAC3 a0ee2093-06c0-4ed6-a6f0-077b500b16e7 139a38001c31221ae95a235fcf4d0a4c { 'aliquot_tag': 'ALQ_c99cd63f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00161.RNA-Seq.R2_L008.T C3L-00161 UCEC RNA-Seq tumor CPT0070380010 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4394831604 FASTQ R2_L008 unaligned CPTAC3 787253e0-0877-4bfa-98f5-9a258f8e1b57 b59dd2025a6ca6dfe94fe19fe9954808 { 'aliquot_tag': 'ALQ_bdfd5efa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00161.RNA-Seq.R2_.T C3L-00161 UCEC RNA-Seq tumor CPT0070620001 20210729_P3_H9_WB7988-Plate3_S93_R2_001.fastq.gz 3782759768 FASTQ R2_ unaligned CPTAC3 e9b68d40-d4ac-45b2-9c77-f5dd93260f41 96fc8c70018cfcdca028a20df00f4ead { 'aliquot_tag': 'ALQ_c99cd63f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00161.RNA-Seq.chimeric.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070620001 2735acf3-1b64-4b92-94db-e567c424e27a.rna_seq.chimeric.gdc_realn.bam 111594232 BAM chimeric harmonized CPTAC3 0deea618-b027-4361-b094-3fb55211668a 0f86c811ab74f5f57a3d980f66676eda { 'aliquot_tag': 'ALQ_c99cd63f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00161.RNA-Seq.genomic.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070380010 241cd472-0a64-4149-ae3c-fb3675bffb9b.rna_seq.genomic.gdc_realn.bam 8293221158 BAM genomic harmonized CPTAC3 8c445589-5fd8-4445-a173-7554b817752e 1b6a6afc42c8350ba2f80b3ea899e230 { 'aliquot_tag': 'ALQ_bdfd5efa', 'gdc_sample_type': 'Primary Tumor' } +C3L-00161.RNA-Seq.genomic.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070620001 2735acf3-1b64-4b92-94db-e567c424e27a.rna_seq.genomic.gdc_realn.bam 5294697129 BAM genomic harmonized CPTAC3 b9f11bf3-e1da-47c4-ad3a-58f9db4320ed be614c65715c42642816a0a5d1c5f1c0 { 'aliquot_tag': 'ALQ_c99cd63f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00161.RNA-Seq.R1_L008.T C3L-00161 UCEC RNA-Seq tumor CPT0070380010 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4123381187 FASTQ R1_L008 unaligned CPTAC3 9e12b685-c46a-431b-bb9e-a90c6f7892ee 02437f3da56bd74fbe3cd4f416b6be0a { 'aliquot_tag': 'ALQ_bdfd5efa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00161.RNA-Seq.R2_L008.T C3L-00161 UCEC RNA-Seq tumor CPT0070380010 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4394831604 FASTQ R2_L008 unaligned CPTAC3 787253e0-0877-4bfa-98f5-9a258f8e1b57 b59dd2025a6ca6dfe94fe19fe9954808 { 'aliquot_tag': 'ALQ_bdfd5efa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-00161.RNA-Seq.T C3L-00161 UCEC RNA-Seq tumor CPT0070620001 20210729_P3_H9_WB7988-Plate3_S93_R1_001.fastq.gz 3660244988 FASTQ unaligned CPTAC3 a0ee2093-06c0-4ed6-a6f0-077b500b16e7 139a38001c31221ae95a235fcf4d0a4c +C3L-00161.RNA-Seq.T C3L-00161 UCEC RNA-Seq tumor CPT0070620001 20210729_P3_H9_WB7988-Plate3_S93_R2_001.fastq.gz 3782759768 FASTQ unaligned CPTAC3 e9b68d40-d4ac-45b2-9c77-f5dd93260f41 96fc8c70018cfcdca028a20df00f4ead C3L-00161.RNA-Seq.transcriptome.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070380010 241cd472-0a64-4149-ae3c-fb3675bffb9b.rna_seq.transcriptome.gdc_realn.bam 11207030390 BAM transcriptome harmonized CPTAC3 e9753bfd-edd8-4b90-94c8-aa5b3c8e73c8 e5a56fe1c57163bae5f834696b638440 { 'aliquot_tag': 'ALQ_bdfd5efa', 'gdc_sample_type': 'Primary Tumor' } +C3L-00161.RNA-Seq.transcriptome.T.hg38 C3L-00161 UCEC RNA-Seq tumor CPT0070620001 2735acf3-1b64-4b92-94db-e567c424e27a.rna_seq.transcriptome.gdc_realn.bam 4085358595 BAM transcriptome harmonized CPTAC3 308f2c10-e27d-4e24-96a9-e9665f1972e8 dccf6663327634eb067797fc665de665 { 'aliquot_tag': 'ALQ_c99cd63f', 'gdc_sample_type': 'Primary Tumor' } C3L-00161.WGS.N C3L-00161 UCEC WGS blood_normal CPT0070970002 CPT0070970002.WholeGenome.RP-1303.bam 56251859993 BAM aligned CPTAC3 ac0f1a57-086b-4668-8f3f-0f549d2f5e6b 73db9c5ef334869a8b556d609dbcbf83 { 'aliquot_tag': 'ALQ_6923ba20', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00161.WGS.N.hg38 C3L-00161 UCEC WGS blood_normal CPT0070970002 86fb70f6-d13a-4fdf-80eb-a744902cbec2_gdc_realn.bam 84199931615 BAM harmonized CPTAC3 e8353960-b692-41e4-b7c3-007b1d54f4a2 769a1fecb953500eb6387685fb9f0cda { 'aliquot_tag': 'ALQ_6923ba20', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00161.WGS.T C3L-00161 UCEC WGS tumor CPT0070380007 CPT0070380007.WholeGenome.RP-1303.bam 58857967742 BAM aligned CPTAC3 b52e923b-79c8-4d2f-9b82-a81758ddd036 098f34e8fbb6e71c5ed8746128b65478 { 'aliquot_tag': 'ALQ_3a82fa18', 'gdc_sample_type': 'Primary Tumor' } @@ -1565,16 +1992,16 @@ C3L-00165.miRNA-Seq.A C3L-00165 CCRCC miRNA-Seq tissue_normal CPT0186410009 1902 C3L-00165.miRNA-Seq.A.hg38 C3L-00165 CCRCC miRNA-Seq tissue_normal CPT0186410009 6a4f21ea-1d2f-47f3-8e0a-bad1b0cc214d_mirnaseq_gdc_realn.bam 231389323 BAM harmonized CPTAC3 ab9343c6-4a1c-4b25-874c-b93cbf5345bd 2530a597eeffc6b3b75e52299399f622 { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00165.miRNA-Seq.T C3L-00165 CCRCC miRNA-Seq tumor CPT0186400009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTAGCT_S38_L005_R1_001.unaln.bam 218806146 BAM unaligned CPTAC3 fe303846-577a-4997-8d8d-ba40ba3ec256 d5ed397d23d2c838a6af94de55c7c847 { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor' } C3L-00165.miRNA-Seq.T.hg38 C3L-00165 CCRCC miRNA-Seq tumor CPT0186400009 cfc7eb08-5492-4b10-9145-d08790666fa7_mirnaseq_gdc_realn.bam 240007072 BAM harmonized CPTAC3 5d09a045-e956-46bb-bf9f-f6e9ea439f97 c72ec3b28eca2a2660752aeed00d3557 { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00165.RNA-Seq.chimeric.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 7f7d58e6-f881-4c0a-ab0a-677ba98edb57.rna_seq.chimeric.gdc_realn.bam 157486086 BAM chimeric harmonized CPTAC3 26d6cdd9-b576-4063-8c01-b367955bdac5 c9b77b5613e29cf728599e04989d92e7 { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00165.RNA-Seq.chimeric.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 46436faf-bfe5-4be2-a1a7-6daa3ef4f46a.rna_seq.chimeric.gdc_realn.bam 31550397 BAM chimeric harmonized CPTAC3 9e0dd54b-808a-41bb-86b5-30252e9977fd 5a274ad39c7aed07e83204c8ccdcec44 { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00165.RNA-Seq.genomic.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 7f7d58e6-f881-4c0a-ab0a-677ba98edb57.rna_seq.genomic.gdc_realn.bam 9572879041 BAM genomic harmonized CPTAC3 18bbaad9-b618-4a12-b0e7-93286fd89fe2 68bfc31c8ffe8827919b364aba8478ba { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00165.RNA-Seq.genomic.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 46436faf-bfe5-4be2-a1a7-6daa3ef4f46a.rna_seq.genomic.gdc_realn.bam 7412700086 BAM genomic harmonized CPTAC3 02c2cc0b-03c1-4a9c-ba93-e2844152a31d 6d3c5d5d5e9a19d7e1d630ea54e6c029 { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00165.RNA-Seq.R1_L001.A C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 190205_UNC32-K00270_0144_BH3M3NBBXY_GTCCGC_S1_L001_R1_001.fastq.gz 4271712663 FASTQ R1_L001 unaligned CPTAC3 1ca1d1d3-5991-4813-a874-ad3c597e8cb1 a935c54fd36ee7a5e4d518849da0ff98 { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00165.RNA-Seq.R1_L008.T C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L008_R1_001.fastq.gz 3497861052 FASTQ R1_L008 unaligned CPTAC3 93af45b2-ef87-426d-90f3-0ba6a49db2cd 6412ad1ee7772ae607e24f7b3d91695c { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00165.RNA-Seq.R2_L001.A C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 190205_UNC32-K00270_0144_BH3M3NBBXY_GTCCGC_S1_L001_R2_001.fastq.gz 4809428838 FASTQ R2_L001 unaligned CPTAC3 91571914-4ac2-43d9-a36d-da56a6f6302f 6b051ce295c2dde90a8a1c61a70b7ba0 { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00165.RNA-Seq.R2_L008.T C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L008_R2_001.fastq.gz 3737441772 FASTQ R2_L008 unaligned CPTAC3 5c3699a8-1547-4721-afd1-ce7b6b255bae a8a2631e2754fd61805d4ef268a9f1ef { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00165.RNA-Seq.transcriptome.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 7f7d58e6-f881-4c0a-ab0a-677ba98edb57.rna_seq.transcriptome.gdc_realn.bam 8732723050 BAM transcriptome harmonized CPTAC3 c01d8e8f-4bd2-467b-87f7-fdcc775e309f 54496ba29e258c9811940ab8de963162 { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00165.RNA-Seq.transcriptome.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 46436faf-bfe5-4be2-a1a7-6daa3ef4f46a.rna_seq.transcriptome.gdc_realn.bam 8631711896 BAM transcriptome harmonized CPTAC3 5c88380f-5ef6-42fb-91a4-ea4170408a46 0fd5b38e2ecfa2c0692ae1cc4587f3aa { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00165.RNA-Seq.chimeric.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 47a435f2-662d-48be-a538-fef00ed3b3d6.rna_seq.chimeric.gdc_realn.bam 157463378 BAM chimeric harmonized CPTAC3 2cc5bd56-bfec-425c-a471-5d6bb129774e 45401e1ec45208818e29fd658f0aa575 { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00165.RNA-Seq.chimeric.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 150f691d-a261-4176-8045-c72866666f38.rna_seq.chimeric.gdc_realn.bam 31536693 BAM chimeric harmonized CPTAC3 dacfe6af-56da-457b-9c5d-691c0ae66d99 6b25b7c4ef8827e2a8c3e52c3ea481b3 { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00165.RNA-Seq.genomic.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 47a435f2-662d-48be-a538-fef00ed3b3d6.rna_seq.genomic.gdc_realn.bam 9574666143 BAM genomic harmonized CPTAC3 4a841075-15aa-43de-898b-8916af9ae108 f8799d18b4da9dc48a9a2a3ff56ef7fb { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00165.RNA-Seq.genomic.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 150f691d-a261-4176-8045-c72866666f38.rna_seq.genomic.gdc_realn.bam 7414171794 BAM genomic harmonized CPTAC3 06192d88-a249-4cd5-9db5-76fa9ab44985 0d5f22fdf53a97af10fb81005354adf0 { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00165.RNA-Seq.R1_L001.A C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 190205_UNC32-K00270_0144_BH3M3NBBXY_GTCCGC_S1_L001_R1_001.fastq.gz 4271712663 FASTQ R1_L001 unaligned CPTAC3 1ca1d1d3-5991-4813-a874-ad3c597e8cb1 a935c54fd36ee7a5e4d518849da0ff98 { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-00165.RNA-Seq.R1_L008.T C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L008_R1_001.fastq.gz 3497861052 FASTQ R1_L008 unaligned CPTAC3 93af45b2-ef87-426d-90f3-0ba6a49db2cd 6412ad1ee7772ae607e24f7b3d91695c { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00165.RNA-Seq.R2_L001.A C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 190205_UNC32-K00270_0144_BH3M3NBBXY_GTCCGC_S1_L001_R2_001.fastq.gz 4809428838 FASTQ R2_L001 unaligned CPTAC3 91571914-4ac2-43d9-a36d-da56a6f6302f 6b051ce295c2dde90a8a1c61a70b7ba0 { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-00165.RNA-Seq.R2_L008.T C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L008_R2_001.fastq.gz 3737441772 FASTQ R2_L008 unaligned CPTAC3 5c3699a8-1547-4721-afd1-ce7b6b255bae a8a2631e2754fd61805d4ef268a9f1ef { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-00165.RNA-Seq.transcriptome.A.hg38 C3L-00165 CCRCC RNA-Seq tissue_normal CPT0186410009 47a435f2-662d-48be-a538-fef00ed3b3d6.rna_seq.transcriptome.gdc_realn.bam 9931131741 BAM transcriptome harmonized CPTAC3 d1c44201-d707-4909-9d36-c1f6f7ee0148 38f96d2f99e9050a7487b4f36eb44224 { 'aliquot_tag': 'ALQ_60a4b603', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00165.RNA-Seq.transcriptome.T.hg38 C3L-00165 CCRCC RNA-Seq tumor CPT0186400009 150f691d-a261-4176-8045-c72866666f38.rna_seq.transcriptome.gdc_realn.bam 9731555944 BAM transcriptome harmonized CPTAC3 7a7839ee-a10d-400b-a4ff-f6d675bfb181 f0ddb882ce2d2436116a4866b4471202 { 'aliquot_tag': 'ALQ_5dc49fb3', 'gdc_sample_type': 'Primary Tumor' } C3L-00165.WGS.A C3L-00165 CCRCC WGS tissue_normal CPT0186410006 CPT0186410006.WholeGenome.RP-1303.bam 62757108017 BAM aligned CPTAC3 496a1cb5-14c0-483b-aa7f-a6efca09ac3a bd28e18de2f245a1110479d239edbfe1 { 'aliquot_tag': 'ALQ_f01bab92', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00165.WGS.A.hg38 C3L-00165 CCRCC WGS tissue_normal CPT0186410006 845de1bc-c19d-4e79-b659-8e94c54d890a_wgs_gdc_realn.bam 91595051026 BAM harmonized CPTAC3 deabddfe-8b5e-4228-be53-aeb271aad4f6 80d67c1bdef0e5ec76a833119f720ad2 { 'aliquot_tag': 'ALQ_f01bab92', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00165.WGS.N C3L-00165 CCRCC WGS blood_normal CPT0186540002 CPT0186540002.WholeGenome.RP-1303.bam 58444025148 BAM aligned CPTAC3 59a8677f-9a0a-45f1-9549-f65fe30ae060 657fee98f9946c677924070fefe6b741 { 'aliquot_tag': 'ALQ_f4ca335e', 'gdc_sample_type': 'Blood Derived Normal' } @@ -1592,9 +2019,9 @@ C3L-00183.MethArray.Red.T C3L-00183 CCRCC Methylation Array tumor CPT0066470010 C3L-00183.miRNA-Seq.T C3L-00183 CCRCC miRNA-Seq tumor CPT0066470007 181113_UNC31-K00269_0164_AH23NNBBXY_ACTTGA_S32_L004_R1_001.unaln.bam 310938237 BAM unaligned CPTAC3 c03341ef-04e3-49c4-b043-68512e1d634d 7c9f6830374ecce72d9506d04005015e { 'aliquot_tag': 'ALQ_aad68d5', 'gdc_sample_type': 'Primary Tumor' } C3L-00183.miRNA-Seq.T.hg38 C3L-00183 CCRCC miRNA-Seq tumor CPT0066470007 16fb7b4b-f3b6-4346-b6cd-d1699bcdfbee_mirnaseq_gdc_realn.bam 346567455 BAM harmonized CPTAC3 6d7e26fb-a0ef-4642-bee7-fdb666c3e459 6b779674376c106242e4e1a0e47a541b { 'aliquot_tag': 'ALQ_aad68d5', 'gdc_sample_type': 'Primary Tumor' } C3L-00183.RNA-Seq.chimeric.T.hg38 C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 f2faa9f8-8660-4cad-8e8a-e6450e807200.rna_seq.chimeric.gdc_realn.bam 27766425 BAM chimeric harmonized CPTAC3 26c0e9c9-d919-4dcd-8aed-6fead9be65a6 cc07c8e0a759827bf8b8c1ec93cffa6b { 'aliquot_tag': 'ALQ_aad68d5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00183.RNA-Seq.genomic.T.hg38 C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 f2faa9f8-8660-4cad-8e8a-e6450e807200.rna_seq.genomic.gdc_realn.bam 6978350735 BAM genomic harmonized CPTAC3 cd0c1128-b450-4caf-9a92-3c56488e0556 2ef73e8222d8dd05bf3595b9764cef2d { 'aliquot_tag': 'ALQ_aad68d5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00183.RNA-Seq.R1_L004.T C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 170830_UNC31-K00269_0078_AHLCVMBBXX_GTTTCG_S16_L004_R1_001.fastq.gz 3350745323 FASTQ R1_L004 unaligned CPTAC3 27bf8e37-426b-496f-8d9c-6ccc7c80b2f6 7ca067b09ef0dc310312523956720b0d { 'aliquot_tag': 'ALQ_aad68d5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00183.RNA-Seq.R2_L004.T C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 170830_UNC31-K00269_0078_AHLCVMBBXX_GTTTCG_S16_L004_R2_001.fastq.gz 3625849342 FASTQ R2_L004 unaligned CPTAC3 96db17cb-b531-47b3-98fc-a86921831781 f104151b9ec6f535fd1d8f2910359a20 { 'aliquot_tag': 'ALQ_aad68d5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00183.RNA-Seq.genomic.T.hg38 C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 f2faa9f8-8660-4cad-8e8a-e6450e807200.rna_seq.genomic.gdc_realn.bam 6978350735 BAM genomic harmonized CPTAC3 c729c68a-1ff5-45af-8f8a-5d48e944553e 2ef73e8222d8dd05bf3595b9764cef2d { 'aliquot_tag': 'ALQ_aad68d5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00183.RNA-Seq.R1_L004.T C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 170830_UNC31-K00269_0078_AHLCVMBBXX_GTTTCG_S16_L004_R1_001.fastq.gz 3350745323 FASTQ R1_L004 unaligned CPTAC3 27bf8e37-426b-496f-8d9c-6ccc7c80b2f6 7ca067b09ef0dc310312523956720b0d { 'aliquot_tag': 'ALQ_aad68d5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00183.RNA-Seq.R2_L004.T C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 170830_UNC31-K00269_0078_AHLCVMBBXX_GTTTCG_S16_L004_R2_001.fastq.gz 3625849342 FASTQ R2_L004 unaligned CPTAC3 96db17cb-b531-47b3-98fc-a86921831781 f104151b9ec6f535fd1d8f2910359a20 { 'aliquot_tag': 'ALQ_aad68d5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-00183.RNA-Seq.transcriptome.T.hg38 C3L-00183 CCRCC RNA-Seq tumor CPT0066470007 f2faa9f8-8660-4cad-8e8a-e6450e807200.rna_seq.transcriptome.gdc_realn.bam 8568426428 BAM transcriptome harmonized CPTAC3 833314d6-355a-4c72-8cde-4c16dcfac66d a07437671bfdf7fb9594c877cc512533 { 'aliquot_tag': 'ALQ_aad68d5', 'gdc_sample_type': 'Primary Tumor' } C3L-00183.WGS.N C3L-00183 CCRCC WGS blood_normal CPT0070990002 CPT0070990002.WholeGenome.RP-1303.bam 67564483904 BAM aligned CPTAC3 b0c161c6-6fba-44be-bd64-1c31546075cb 4b10017086437fd5b4bfbd843224dd27 { 'aliquot_tag': 'ALQ_d6130441', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00183.WGS.N.hg38 C3L-00183 CCRCC WGS blood_normal CPT0070990002 dc74a374-6b12-4fd0-a4c4-4c261d93d256_gdc_realn.bam 100466078962 BAM harmonized CPTAC3 27c6f904-4480-4061-a7a0-fcbc39769da3 202891f935103696da57109962b1ce13 { 'aliquot_tag': 'ALQ_d6130441', 'gdc_sample_type': 'Blood Derived Normal' } @@ -1609,9 +2036,9 @@ C3L-00189.MethArray.Red.T C3L-00189 PDA Methylation Array tumor CPT0081060010 20 C3L-00189.miRNA-Seq.T C3L-00189 PDA miRNA-Seq tumor CPT0081060007 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L001_R1_001.unaln.bam 264208048 BAM unaligned CPTAC3 7e8d49fc-bf8d-457a-8510-f0dc6d9218a6 4253d56d758376a14d98deb8c216db18 { 'aliquot_tag': 'ALQ_7c712fcf', 'gdc_sample_type': 'Primary Tumor' } C3L-00189.miRNA-Seq.T.hg38 C3L-00189 PDA miRNA-Seq tumor CPT0081060007 abf4b7e1-0639-49f1-afcb-a7bbaba06766_mirnaseq_gdc_realn.bam 290752183 BAM harmonized CPTAC3 96d11e31-189a-41cb-b974-fe1bb58e8abf 8be7815b33db224be98e67b14c1677e9 { 'aliquot_tag': 'ALQ_7c712fcf', 'gdc_sample_type': 'Primary Tumor' } C3L-00189.RNA-Seq.chimeric.T.hg38 C3L-00189 PDA RNA-Seq tumor CPT0081060007 8432c558-85ad-47cc-8e0e-e1751589ab9c.rna_seq.chimeric.gdc_realn.bam 88435931 BAM chimeric harmonized CPTAC3 33a1e39e-d01d-421d-bfa4-eb3e05a25375 0c10dec13f40c1fc87b77a8bbe673198 { 'aliquot_tag': 'ALQ_7c712fcf', 'gdc_sample_type': 'Primary Tumor' } -C3L-00189.RNA-Seq.genomic.T.hg38 C3L-00189 PDA RNA-Seq tumor CPT0081060007 8432c558-85ad-47cc-8e0e-e1751589ab9c.rna_seq.genomic.gdc_realn.bam 8642159963 BAM genomic harmonized CPTAC3 1a4dfe19-9ad3-41c3-ba3d-72b671d5ee5d d8bb0ed9589f3cef2a5168e91847e7ae { 'aliquot_tag': 'ALQ_7c712fcf', 'gdc_sample_type': 'Primary Tumor' } -C3L-00189.RNA-Seq.R1_L003.T C3L-00189 PDA RNA-Seq tumor CPT0081060007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3733769690 FASTQ R1_L003 unaligned CPTAC3 beef0b1b-6b54-455b-914f-d774ee730e7b 60287ca7e875ea27b0336dd634563e8a { 'aliquot_tag': 'ALQ_7c712fcf', 'gdc_sample_type': 'Primary Tumor' } -C3L-00189.RNA-Seq.R2_L003.T C3L-00189 PDA RNA-Seq tumor CPT0081060007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3871559073 FASTQ R2_L003 unaligned CPTAC3 5f5f8487-0642-4731-8db7-e1e194bdb9f5 d272028dbe7ba96625b19448a02c1e89 { 'aliquot_tag': 'ALQ_7c712fcf', 'gdc_sample_type': 'Primary Tumor' } +C3L-00189.RNA-Seq.genomic.T.hg38 C3L-00189 PDA RNA-Seq tumor CPT0081060007 8432c558-85ad-47cc-8e0e-e1751589ab9c.rna_seq.genomic.gdc_realn.bam 8642159963 BAM genomic harmonized CPTAC3 75aad7c3-5b10-416a-874a-9d5ef40c8d96 d8bb0ed9589f3cef2a5168e91847e7ae { 'aliquot_tag': 'ALQ_7c712fcf', 'gdc_sample_type': 'Primary Tumor' } +C3L-00189.RNA-Seq.R1_L003.T C3L-00189 PDA RNA-Seq tumor CPT0081060007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3733769690 FASTQ R1_L003 unaligned CPTAC3 beef0b1b-6b54-455b-914f-d774ee730e7b 60287ca7e875ea27b0336dd634563e8a { 'aliquot_tag': 'ALQ_7c712fcf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00189.RNA-Seq.R2_L003.T C3L-00189 PDA RNA-Seq tumor CPT0081060007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3871559073 FASTQ R2_L003 unaligned CPTAC3 5f5f8487-0642-4731-8db7-e1e194bdb9f5 d272028dbe7ba96625b19448a02c1e89 { 'aliquot_tag': 'ALQ_7c712fcf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-00189.RNA-Seq.transcriptome.T.hg38 C3L-00189 PDA RNA-Seq tumor CPT0081060007 8432c558-85ad-47cc-8e0e-e1751589ab9c.rna_seq.transcriptome.gdc_realn.bam 9734664026 BAM transcriptome harmonized CPTAC3 aa5ebc03-8d2c-4c5a-81bd-d750d11bc477 3dd5e2eaeb280c6ba87db48a98d83d0e { 'aliquot_tag': 'ALQ_7c712fcf', 'gdc_sample_type': 'Primary Tumor' } C3L-00189.Targeted.T C3L-00189 PDA Targeted Sequencing tumor CPT0081060010_1 CPT0081060010_1.CustomSelection.RP-1303.PDO-18786.bam 4649483802 BAM aligned CPTAC3 8c86649e-f00a-42c1-bc6a-9c9dd4052771 10a3267819ca05ad155ba7f1733493fc { 'aliquot_tag': 'ALQ_7764a817', 'gdc_sample_type': 'Primary Tumor' } C3L-00189.Targeted.T.hg38 C3L-00189 PDA Targeted Sequencing tumor CPT0081060010_1 9cb5b887-76b0-4202-8db8-b144665dc0e9_targetedsequencing_gdc_realn.bam 6707736616 BAM harmonized CPTAC3 cfece7cf-0ffd-4328-a9ba-30d718b088e2 3ee5d64106dbc536bc2640a2ea552aff { 'aliquot_tag': 'ALQ_7764a817', 'gdc_sample_type': 'Primary Tumor' } @@ -1636,11 +2063,11 @@ C3L-00263.miRNA-Seq.T.hg38 C3L-00263 LUAD miRNA-Seq tumor CPT0011710010 9016621d C3L-00263.RNA-Seq.chimeric.A.hg38 C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 ef9b35f0-230c-422c-bf23-12c59863ab5b.rna_seq.chimeric.gdc_realn.bam 68561378 BAM chimeric harmonized CPTAC3 b05578d5-6fac-48d2-8a9b-fed9d64c7aea 0081659b064ec7c6485064bd83050c31 { 'aliquot_tag': 'ALQ_d7951fa0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00263.RNA-Seq.chimeric.T.hg38 C3L-00263 LUAD RNA-Seq tumor CPT0011710010 2a331ed3-5e34-43bf-9c02-16788f5d8872.rna_seq.chimeric.gdc_realn.bam 100568975 BAM chimeric harmonized CPTAC3 5f7fbca8-a43f-47fa-9faf-da89e8f24e15 5ba6f2495754014bc740a0fc2bbb17b6 { 'aliquot_tag': 'ALQ_4b647cae', 'gdc_sample_type': 'Primary Tumor' } C3L-00263.RNA-Seq.genomic.A.hg38 C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 ef9b35f0-230c-422c-bf23-12c59863ab5b.rna_seq.genomic.gdc_realn.bam 8110047094 BAM genomic harmonized CPTAC3 22e9cd27-64a8-4be8-b0ce-443f10110e14 bf34ef5b9b71e6a4bd79576c5c9bc146 { 'aliquot_tag': 'ALQ_d7951fa0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00263.RNA-Seq.genomic.T.hg38 C3L-00263 LUAD RNA-Seq tumor CPT0011710010 2a331ed3-5e34-43bf-9c02-16788f5d8872.rna_seq.genomic.gdc_realn.bam 9633453397 BAM genomic harmonized CPTAC3 82fbdebc-4582-41c5-b505-871d640873c5 5975e67f094a8263c2fde07ecffb3ab6 { 'aliquot_tag': 'ALQ_4b647cae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00263.RNA-Seq.R1_L001.T C3L-00263 LUAD RNA-Seq tumor CPT0011710010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTCCGC_S2_L001_R1_001.fastq.gz 4314730041 FASTQ R1_L001 unaligned CPTAC3 cc6bf841-0601-4903-9874-3baf8b90095d 6ec53e8709f56b3ce1e655c8be9c57eb { 'aliquot_tag': 'ALQ_4b647cae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00263.RNA-Seq.R1_L007.A C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L007_R1_001.fastq.gz 3923290884 FASTQ R1_L007 unaligned CPTAC3 15b13260-897a-49f8-bcd4-e36d00b01952 7fda6d83453116a1457fc6b53f38b5b3 { 'aliquot_tag': 'ALQ_d7951fa0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00263.RNA-Seq.R2_L001.T C3L-00263 LUAD RNA-Seq tumor CPT0011710010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTCCGC_S2_L001_R2_001.fastq.gz 4671472175 FASTQ R2_L001 unaligned CPTAC3 57cef113-2cda-4f74-b94c-08e9a2c79a4d fa8fd1fe146225ee1673bf8436233b7c { 'aliquot_tag': 'ALQ_4b647cae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00263.RNA-Seq.R2_L007.A C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L007_R2_001.fastq.gz 4323645507 FASTQ R2_L007 unaligned CPTAC3 5aba71bd-ce6b-45fc-a93f-9609d7dd8d36 727fb2e4f2872db09a224769db6c8ef4 { 'aliquot_tag': 'ALQ_d7951fa0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00263.RNA-Seq.genomic.T.hg38 C3L-00263 LUAD RNA-Seq tumor CPT0011710010 2a331ed3-5e34-43bf-9c02-16788f5d8872.rna_seq.genomic.gdc_realn.bam 9633453397 BAM genomic harmonized CPTAC3 184bb0ec-a71a-426e-8fa4-86a3860fc7ff 5975e67f094a8263c2fde07ecffb3ab6 { 'aliquot_tag': 'ALQ_4b647cae', 'gdc_sample_type': 'Primary Tumor' } +C3L-00263.RNA-Seq.R1_L001.T C3L-00263 LUAD RNA-Seq tumor CPT0011710010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTCCGC_S2_L001_R1_001.fastq.gz 4314730041 FASTQ R1_L001 unaligned CPTAC3 cc6bf841-0601-4903-9874-3baf8b90095d 6ec53e8709f56b3ce1e655c8be9c57eb { 'aliquot_tag': 'ALQ_4b647cae', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00263.RNA-Seq.R1_L007.A C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L007_R1_001.fastq.gz 3923290884 FASTQ R1_L007 unaligned CPTAC3 15b13260-897a-49f8-bcd4-e36d00b01952 7fda6d83453116a1457fc6b53f38b5b3 { 'aliquot_tag': 'ALQ_d7951fa0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00263.RNA-Seq.R2_L001.T C3L-00263 LUAD RNA-Seq tumor CPT0011710010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTCCGC_S2_L001_R2_001.fastq.gz 4671472175 FASTQ R2_L001 unaligned CPTAC3 57cef113-2cda-4f74-b94c-08e9a2c79a4d fa8fd1fe146225ee1673bf8436233b7c { 'aliquot_tag': 'ALQ_4b647cae', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00263.RNA-Seq.R2_L007.A C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L007_R2_001.fastq.gz 4323645507 FASTQ R2_L007 unaligned CPTAC3 5aba71bd-ce6b-45fc-a93f-9609d7dd8d36 727fb2e4f2872db09a224769db6c8ef4 { 'aliquot_tag': 'ALQ_d7951fa0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-00263.RNA-Seq.transcriptome.A.hg38 C3L-00263 LUAD RNA-Seq tissue_normal CPT0011750005 ef9b35f0-230c-422c-bf23-12c59863ab5b.rna_seq.transcriptome.gdc_realn.bam 11070459868 BAM transcriptome harmonized CPTAC3 ce03d437-ab00-4ef4-8057-38ad9488a6f9 bebaa710cbc98b1dc74f4323bda3bcba { 'aliquot_tag': 'ALQ_d7951fa0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00263.RNA-Seq.transcriptome.T.hg38 C3L-00263 LUAD RNA-Seq tumor CPT0011710010 2a331ed3-5e34-43bf-9c02-16788f5d8872.rna_seq.transcriptome.gdc_realn.bam 11568792638 BAM transcriptome harmonized CPTAC3 593c1d8c-8838-4292-93d2-4b4501bd79a3 ae702d4f1e9c0f22c39fc2e81b197159 { 'aliquot_tag': 'ALQ_4b647cae', 'gdc_sample_type': 'Primary Tumor' } C3L-00263.WGS.N C3L-00263 LUAD WGS blood_normal CPT0012420002 CPT0012420002.WholeGenome.RP-1303.bam 57732601088 BAM aligned CPTAC3 9bea6d11-641b-4bc7-ac05-d6a3ab0f5258 f1ac4b7e0b364f5241038f8f7c7456a5 { 'aliquot_tag': 'ALQ_4cad3e20', 'gdc_sample_type': 'Blood Derived Normal' } @@ -1657,11 +2084,11 @@ C3L-00265.MethArray.Green.T C3L-00265 GBM Methylation Array tumor CPT0011440007 C3L-00265.MethArray.Red.T C3L-00265 GBM Methylation Array tumor CPT0011440007 202176290047_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 8a445b31-c3d2-423e-9fc5-d5865e249f46 69e52f3377163bdc21e08e39a6b49db9 { 'aliquot_tag': 'ALQ_826f2592', 'gdc_sample_type': 'Primary Tumor' } C3L-00265.miRNA-Seq.T C3L-00265 GBM miRNA-Seq tumor CPT0011440010 181012_UNC32-K00270_0124_AH223CBBXY_GTGGCC_S40_L004_R1_001.unaln.bam 264945923 BAM unaligned CPTAC3 fc8c426a-ad65-4db0-843b-aa0a48d2785f cac71633b91a309ff1dc239a39af31ba { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor' } C3L-00265.miRNA-Seq.T.hg38 C3L-00265 GBM miRNA-Seq tumor CPT0011440010 e8d52b7c-4ede-439f-8d7e-07effde162e7_mirnaseq_gdc_realn.bam 296073120 BAM harmonized CPTAC3 2aac854c-5e86-434f-8934-abec19c5047f eed0494f93cc19baa32ca82adb39c96b { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor' } -C3L-00265.RNA-Seq.chimeric.T.hg38 C3L-00265 GBM RNA-Seq tumor CPT0011440010 aaf67aaa-d7a8-4c7b-a592-5f68bf1d4c24.rna_seq.chimeric.gdc_realn.bam 79656139 BAM chimeric harmonized CPTAC3 7d5c61f2-8ebf-454a-9264-b872796d4da8 b49fb9a841736e19d1387f00878c3152 { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor' } -C3L-00265.RNA-Seq.genomic.T.hg38 C3L-00265 GBM RNA-Seq tumor CPT0011440010 aaf67aaa-d7a8-4c7b-a592-5f68bf1d4c24.rna_seq.genomic.gdc_realn.bam 8675920928 BAM genomic harmonized CPTAC3 0ff3bb9f-a27e-4277-a231-d7f60c120f3a 1a9c7d4dcf206cbdd42fb3be46c35239 { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor' } -C3L-00265.RNA-Seq.R1_L001.T C3L-00265 GBM RNA-Seq tumor CPT0011440010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L001_R1_001.fastq.gz 3737193939 FASTQ R1_L001 unaligned CPTAC3 02ff01eb-0972-4d0a-85b5-b4b099fc1854 7a4594ad7067384e680062a193c03e6c { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor' } -C3L-00265.RNA-Seq.R2_L001.T C3L-00265 GBM RNA-Seq tumor CPT0011440010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L001_R2_001.fastq.gz 3890014097 FASTQ R2_L001 unaligned CPTAC3 060e65f9-e379-4618-865d-3b10bf8fbbad 056450f39caec3cbb97a5f883987dca3 { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor' } -C3L-00265.RNA-Seq.transcriptome.T.hg38 C3L-00265 GBM RNA-Seq tumor CPT0011440010 aaf67aaa-d7a8-4c7b-a592-5f68bf1d4c24.rna_seq.transcriptome.gdc_realn.bam 11073306109 BAM transcriptome harmonized CPTAC3 7bdf48ef-f6cd-44bb-be99-eeb92995c687 0e3aa11dadcb0e8cd58fda2c75d3c376 { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor' } +C3L-00265.RNA-Seq.chimeric.T.hg38 C3L-00265 GBM RNA-Seq tumor CPT0011440010 097c15d9-d3d1-4a30-b836-7e03ae78e2ff.rna_seq.chimeric.gdc_realn.bam 79606763 BAM chimeric harmonized CPTAC3 1c8e3f4d-188f-47b1-98fb-74b3f1812f66 04600fee80c9b067cb7bb3d3bb96c2cb { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor' } +C3L-00265.RNA-Seq.genomic.T.hg38 C3L-00265 GBM RNA-Seq tumor CPT0011440010 097c15d9-d3d1-4a30-b836-7e03ae78e2ff.rna_seq.genomic.gdc_realn.bam 8677131539 BAM genomic harmonized CPTAC3 ab7a5c3b-1c30-4cdf-b0a6-55816e3f46e7 ef9e2867210a164e81331f49c72abbc8 { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor' } +C3L-00265.RNA-Seq.R1_L001.T C3L-00265 GBM RNA-Seq tumor CPT0011440010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L001_R1_001.fastq.gz 3737193939 FASTQ R1_L001 unaligned CPTAC3 02ff01eb-0972-4d0a-85b5-b4b099fc1854 7a4594ad7067384e680062a193c03e6c { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00265.RNA-Seq.R2_L001.T C3L-00265 GBM RNA-Seq tumor CPT0011440010 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L001_R2_001.fastq.gz 3890014097 FASTQ R2_L001 unaligned CPTAC3 060e65f9-e379-4618-865d-3b10bf8fbbad 056450f39caec3cbb97a5f883987dca3 { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00265.RNA-Seq.transcriptome.T.hg38 C3L-00265 GBM RNA-Seq tumor CPT0011440010 097c15d9-d3d1-4a30-b836-7e03ae78e2ff.rna_seq.transcriptome.gdc_realn.bam 12706651949 BAM transcriptome harmonized CPTAC3 3e0dda72-25fc-47cc-8cc1-df1de96b4594 38c088c3623b50eddfd6c81f99f1c555 { 'aliquot_tag': 'ALQ_5108170', 'gdc_sample_type': 'Primary Tumor' } C3L-00265.WGS.N C3L-00265 GBM WGS blood_normal CPT0012430002 CPT0012430002.WholeGenome.RP-1303.bam 72080622489 BAM aligned CPTAC3 1cc9db02-a4a4-42dd-bc03-d441310da2f8 8ebf4bb674d939afb2444c126d0cbe42 { 'aliquot_tag': 'ALQ_71cd1790', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00265.WGS.N.hg38 C3L-00265 GBM WGS blood_normal CPT0012430002 6a73f3b9-56b8-4007-ad6f-7dbc00f85a4c_gdc_realn.bam 108566070050 BAM harmonized CPTAC3 49abd759-c4f2-4a40-8f59-153c9bb19170 9fc30ad0aae9bd0f858cacdffe08136d { 'aliquot_tag': 'ALQ_71cd1790', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00265.WGS.T C3L-00265 GBM WGS tumor CPT0011440007 CPT0011440007.WholeGenome.RP-1303.bam 62644753965 BAM aligned CPTAC3 6ff3323b-e156-4fdc-9694-0331c08d53f8 7a3e2677199f92887fda7aab57bfb491 { 'aliquot_tag': 'ALQ_826f2592', 'gdc_sample_type': 'Primary Tumor' } @@ -1674,11 +2101,11 @@ C3L-00275.MethArray.Green.T C3L-00275 CM Methylation Array tumor CPT0000370006 2 C3L-00275.MethArray.Red.T C3L-00275 CM Methylation Array tumor CPT0000370006 202234380024_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 c352bfd5-8576-4fd1-80d8-0711c44ea7ae fb63a1433e3a11a96cd0c55b6ec0ac82 { 'aliquot_tag': 'ALQ_c5105446', 'gdc_sample_type': 'Primary Tumor' } C3L-00275.miRNA-Seq.T C3L-00275 CM miRNA-Seq tumor CPT0000370009 190828_UNC32-K00270_0200_BH7GVJBBXY_CACTCA_S141_L008_R1_001.unaln.bam 213057023 BAM unaligned CPTAC3 b7b3c278-21f1-4b31-bbf4-4a9b816cfb03 0dd1e373ed3f3d7b9b1d730aaf26b30e { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor' } C3L-00275.miRNA-Seq.T.hg38 C3L-00275 CM miRNA-Seq tumor CPT0000370009 2207a8f1-0a0e-4778-8e4b-a5739c396a60_mirnaseq_gdc_realn.bam 233282438 BAM harmonized CPTAC3 b9ba0ea7-e892-493b-9e4b-33ca32c4d1dd 22afdf4018176030439527215228979d { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00275.RNA-Seq.chimeric.T.hg38 C3L-00275 CM RNA-Seq tumor CPT0000370009 e07720bc-05c1-4ce3-af1d-8a21c28cb9db.rna_seq.chimeric.gdc_realn.bam 103779993 BAM chimeric harmonized CPTAC3 fc06171a-f6a1-4a75-bdc9-78e0548faed5 01f1f27a51d6a493b1d6158b8dd5df23 { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00275.RNA-Seq.genomic.T.hg38 C3L-00275 CM RNA-Seq tumor CPT0000370009 e07720bc-05c1-4ce3-af1d-8a21c28cb9db.rna_seq.genomic.gdc_realn.bam 10428444431 BAM genomic harmonized CPTAC3 6aa536fa-6e80-4e33-a29d-66837225fd02 a574649cb7d22e0cab1e29584a4296c1 { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00275.RNA-Seq.R1_L001.T C3L-00275 CM RNA-Seq tumor CPT0000370009 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4637357806 FASTQ R1_L001 unaligned CPTAC3 310fdc25-f963-4ce6-b5a3-e2f046bf12d0 9a184b268b11510f928b4a79e035ecf0 { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00275.RNA-Seq.R2_L001.T C3L-00275 CM RNA-Seq tumor CPT0000370009 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5279806733 FASTQ R2_L001 unaligned CPTAC3 a69bce17-00f5-45e4-8f3d-344b6d0734de 8b2d9c908326bc3587c2331317be943b { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00275.RNA-Seq.transcriptome.T.hg38 C3L-00275 CM RNA-Seq tumor CPT0000370009 e07720bc-05c1-4ce3-af1d-8a21c28cb9db.rna_seq.transcriptome.gdc_realn.bam 11728429548 BAM transcriptome harmonized CPTAC3 8b6d492b-af5f-47da-a6c9-27b9ae74cdef c207ddc1acad61d9662dc674d2397b27 { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor' } +C3L-00275.RNA-Seq.chimeric.T.hg38 C3L-00275 CM RNA-Seq tumor CPT0000370009 d2a75fa4-d62a-4f34-aeca-a00013c68af5.rna_seq.chimeric.gdc_realn.bam 103756589 BAM chimeric harmonized CPTAC3 893e3f8e-1e63-4899-a2eb-9d0c84fb0869 29c2b5eb515ebf51c91f291ecb09e09f { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor' } +C3L-00275.RNA-Seq.genomic.T.hg38 C3L-00275 CM RNA-Seq tumor CPT0000370009 d2a75fa4-d62a-4f34-aeca-a00013c68af5.rna_seq.genomic.gdc_realn.bam 10430102843 BAM genomic harmonized CPTAC3 547aeacb-8a47-4de1-b397-119dc26ff2a3 7783fc1344c1dcd9e7aec10767bd70d4 { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor' } +C3L-00275.RNA-Seq.R1_L001.T C3L-00275 CM RNA-Seq tumor CPT0000370009 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4637357806 FASTQ R1_L001 unaligned CPTAC3 310fdc25-f963-4ce6-b5a3-e2f046bf12d0 9a184b268b11510f928b4a79e035ecf0 { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00275.RNA-Seq.R2_L001.T C3L-00275 CM RNA-Seq tumor CPT0000370009 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5279806733 FASTQ R2_L001 unaligned CPTAC3 a69bce17-00f5-45e4-8f3d-344b6d0734de 8b2d9c908326bc3587c2331317be943b { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00275.RNA-Seq.transcriptome.T.hg38 C3L-00275 CM RNA-Seq tumor CPT0000370009 d2a75fa4-d62a-4f34-aeca-a00013c68af5.rna_seq.transcriptome.gdc_realn.bam 13669822380 BAM transcriptome harmonized CPTAC3 97b3417c-31eb-4e84-9cb8-b0c1af7c612f 5a8df7315d906bc620f11bd2ecf2017c { 'aliquot_tag': 'ALQ_55af49d7', 'gdc_sample_type': 'Primary Tumor' } C3L-00275.WGS.N C3L-00275 CM WGS blood_normal CPT0000590002 CPT0000590002.WholeGenome.RP-1303.bam 66786276638 BAM aligned CPTAC3 fc6ed4e8-5e1b-479a-9485-2bb129246520 0614968d30e515e600f95a59fd0ae58f { 'aliquot_tag': 'ALQ_ab14cd23', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00275.WGS.N.hg38 C3L-00275 CM WGS blood_normal CPT0000590002 e2b95b95-f73e-413c-81be-140996dc3212_wgs_gdc_realn.bam 96647760322 BAM harmonized CPTAC3 ae430219-2c8a-4a1e-8a00-2f5074ea0521 5c03e775568aaf6233cf7dddcf06fe8d { 'aliquot_tag': 'ALQ_ab14cd23', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00275.WGS.T C3L-00275 CM WGS tumor CPT0000370006 CPT0000370006.WholeGenome.RP-1303.bam 69699562445 BAM aligned CPTAC3 e803819e-dfdc-48de-8dad-86abef237136 acd3ea3bc9f07f626b39e1f37155d7e7 { 'aliquot_tag': 'ALQ_c5105446', 'gdc_sample_type': 'Primary Tumor' } @@ -1694,9 +2121,9 @@ C3L-00277.MethArray.Red.T C3L-00277 PDA Methylation Array tumor CPT0011520006 20 C3L-00277.miRNA-Seq.T C3L-00277 PDA miRNA-Seq tumor CPT0011520009 181113_UNC31-K00269_0164_AH23NNBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 235999101 BAM unaligned CPTAC3 316afba4-7e72-4cc3-bd61-a97f446cf36f 5ddb9ce7afb6201d719d0acec39425d4 { 'aliquot_tag': 'ALQ_21cb2e90', 'gdc_sample_type': 'Primary Tumor' } C3L-00277.miRNA-Seq.T.hg38 C3L-00277 PDA miRNA-Seq tumor CPT0011520009 fcaf45f4-732b-403f-8aec-6bc44e26e703_mirnaseq_gdc_realn.bam 265445646 BAM harmonized CPTAC3 71b322f7-3927-4b7c-9562-c716c03dbb01 085f0243f294831a430a0dd4a7573ce8 { 'aliquot_tag': 'ALQ_21cb2e90', 'gdc_sample_type': 'Primary Tumor' } C3L-00277.RNA-Seq.chimeric.T.hg38 C3L-00277 PDA RNA-Seq tumor CPT0011520009 10923ee3-4b64-46f9-b197-3e44af7f24f3.rna_seq.chimeric.gdc_realn.bam 93911055 BAM chimeric harmonized CPTAC3 fec42229-3b29-4790-81d7-70bef0c4e8a4 27d386a3be683fe7bf0e88a3b583e638 { 'aliquot_tag': 'ALQ_21cb2e90', 'gdc_sample_type': 'Primary Tumor' } -C3L-00277.RNA-Seq.genomic.T.hg38 C3L-00277 PDA RNA-Seq tumor CPT0011520009 10923ee3-4b64-46f9-b197-3e44af7f24f3.rna_seq.genomic.gdc_realn.bam 8057632753 BAM genomic harmonized CPTAC3 7b44e1e7-b118-4fd5-a9a4-c140669c1e88 8784ac32632b7c7affa3eaad56d48637 { 'aliquot_tag': 'ALQ_21cb2e90', 'gdc_sample_type': 'Primary Tumor' } -C3L-00277.RNA-Seq.R1_L001.T C3L-00277 PDA RNA-Seq tumor CPT0011520009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L001_R1_001.fastq.gz 4216556912 FASTQ R1_L001 unaligned CPTAC3 a08adf4b-e3f8-4377-869e-aa7ce258cbdf 3d5fd4700bf1158d192bfb0832f9f352 { 'aliquot_tag': 'ALQ_21cb2e90', 'gdc_sample_type': 'Primary Tumor' } -C3L-00277.RNA-Seq.R2_L001.T C3L-00277 PDA RNA-Seq tumor CPT0011520009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L001_R2_001.fastq.gz 4554252121 FASTQ R2_L001 unaligned CPTAC3 12732716-1c43-41b3-9def-bffbe95e960b 99c464003b2810b5ee1da3ea33e7f40c { 'aliquot_tag': 'ALQ_21cb2e90', 'gdc_sample_type': 'Primary Tumor' } +C3L-00277.RNA-Seq.genomic.T.hg38 C3L-00277 PDA RNA-Seq tumor CPT0011520009 10923ee3-4b64-46f9-b197-3e44af7f24f3.rna_seq.genomic.gdc_realn.bam 8057632753 BAM genomic harmonized CPTAC3 ed801705-746b-40d4-bb6d-44493abae816 8784ac32632b7c7affa3eaad56d48637 { 'aliquot_tag': 'ALQ_21cb2e90', 'gdc_sample_type': 'Primary Tumor' } +C3L-00277.RNA-Seq.R1_L001.T C3L-00277 PDA RNA-Seq tumor CPT0011520009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L001_R1_001.fastq.gz 4216556912 FASTQ R1_L001 unaligned CPTAC3 a08adf4b-e3f8-4377-869e-aa7ce258cbdf 3d5fd4700bf1158d192bfb0832f9f352 { 'aliquot_tag': 'ALQ_21cb2e90', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00277.RNA-Seq.R2_L001.T C3L-00277 PDA RNA-Seq tumor CPT0011520009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L001_R2_001.fastq.gz 4554252121 FASTQ R2_L001 unaligned CPTAC3 12732716-1c43-41b3-9def-bffbe95e960b 99c464003b2810b5ee1da3ea33e7f40c { 'aliquot_tag': 'ALQ_21cb2e90', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-00277.RNA-Seq.transcriptome.T.hg38 C3L-00277 PDA RNA-Seq tumor CPT0011520009 10923ee3-4b64-46f9-b197-3e44af7f24f3.rna_seq.transcriptome.gdc_realn.bam 11688766873 BAM transcriptome harmonized CPTAC3 650938b7-16ef-4e23-8cd6-e416fe51d5de b9baea6918ed486476e1476560118817 { 'aliquot_tag': 'ALQ_21cb2e90', 'gdc_sample_type': 'Primary Tumor' } C3L-00277.Targeted.T C3L-00277 PDA Targeted Sequencing tumor CPT0011520006_1 CPT0011520006_1.CustomSelection.RP-1303.PDO-18786.bam 3986545820 BAM aligned CPTAC3 90a6040d-6b8f-4e6e-9b92-cd0f1af9024b f7b72f2f15fa4dd808292ee191a02fb3 { 'aliquot_tag': 'ALQ_8befb27d', 'gdc_sample_type': 'Primary Tumor' } C3L-00277.Targeted.T.hg38 C3L-00277 PDA Targeted Sequencing tumor CPT0011520006_1 58cdfc92-0d6b-46b3-94dd-28f1a5a247dd_targetedsequencing_gdc_realn.bam 5721713322 BAM harmonized CPTAC3 3d53590b-be46-4b35-906f-071f1156ce0a 4f495977eb19ea1d37a6c2a8d3bc551e { 'aliquot_tag': 'ALQ_8befb27d', 'gdc_sample_type': 'Primary Tumor' } @@ -1718,11 +2145,11 @@ C3L-00278.MethArray.Green.T C3L-00278 GBM Methylation Array tumor CPT0000430002 C3L-00278.MethArray.Red.T C3L-00278 GBM Methylation Array tumor CPT0000430002 202184990052_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 8a4c4b6f-3046-4e45-a658-b2ea12e92ed2 14370fb4c78c178272d40ec071729fcc { 'aliquot_tag': 'ALQ_2af80627', 'gdc_sample_type': 'Primary Tumor' } C3L-00278.miRNA-Seq.T C3L-00278 GBM miRNA-Seq tumor CPT0000430008 181012_UNC32-K00270_0124_AH223CBBXY_GGCTAC_S32_L002_R1_001.unaln.bam 254899906 BAM unaligned CPTAC3 fc74dee6-efdf-4b55-bfb2-969e447ea5fa 80e6de9f7ef9429a9cb30b69aa027fff { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor' } C3L-00278.miRNA-Seq.T.hg38 C3L-00278 GBM miRNA-Seq tumor CPT0000430008 29d2678c-fbce-4cc9-acce-057e56966139_mirnaseq_gdc_realn.bam 282329723 BAM harmonized CPTAC3 73e8c962-1a05-4de6-8c69-9574c6b8fd52 0ad2982e366801c50e93ee9a624a028a { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor' } -C3L-00278.RNA-Seq.chimeric.T.hg38 C3L-00278 GBM RNA-Seq tumor CPT0000430008 4876389c-4c76-4261-ab4e-bcec93a46982.rna_seq.chimeric.gdc_realn.bam 119938439 BAM chimeric harmonized CPTAC3 e25e1b03-f852-4700-a550-0aff1fa61659 aed02f49f5c2813c08a7ff114f84f44b { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor' } -C3L-00278.RNA-Seq.genomic.T.hg38 C3L-00278 GBM RNA-Seq tumor CPT0000430008 4876389c-4c76-4261-ab4e-bcec93a46982.rna_seq.genomic.gdc_realn.bam 8421645252 BAM genomic harmonized CPTAC3 04f32a49-8b55-4e0e-9784-8ddf32bf26d8 ebf4789b5b47a50998e7c7446b2d66dd { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor' } -C3L-00278.RNA-Seq.R1_L003.T C3L-00278 GBM RNA-Seq tumor CPT0000430008 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L003_R1_001.fastq.gz 3807428132 FASTQ R1_L003 unaligned CPTAC3 8602e4ce-ab89-4841-aad5-97737a5dc01e 1ba061ebaa32446efa675ef85590c32e { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor' } -C3L-00278.RNA-Seq.R2_L003.T C3L-00278 GBM RNA-Seq tumor CPT0000430008 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L003_R2_001.fastq.gz 4097790684 FASTQ R2_L003 unaligned CPTAC3 3b826fe0-20cd-43f8-b81e-a8a38e7c8d01 468fee694ea2b02c8237c4a1de572e93 { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor' } -C3L-00278.RNA-Seq.transcriptome.T.hg38 C3L-00278 GBM RNA-Seq tumor CPT0000430008 4876389c-4c76-4261-ab4e-bcec93a46982.rna_seq.transcriptome.gdc_realn.bam 7199989688 BAM transcriptome harmonized CPTAC3 0eef88a6-5f16-4326-85ed-e79b99a766ac 187c4f4ea608e86d0203ad6bbdd37f5a { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor' } +C3L-00278.RNA-Seq.chimeric.T.hg38 C3L-00278 GBM RNA-Seq tumor CPT0000430008 69706fd1-eef0-46cb-bd99-d279cc4c5012.rna_seq.chimeric.gdc_realn.bam 119911281 BAM chimeric harmonized CPTAC3 e2f04b5e-0312-465c-9767-96336fcb0b20 789ccdd50350c02c70952db1080c3f9c { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor' } +C3L-00278.RNA-Seq.genomic.T.hg38 C3L-00278 GBM RNA-Seq tumor CPT0000430008 69706fd1-eef0-46cb-bd99-d279cc4c5012.rna_seq.genomic.gdc_realn.bam 8422431264 BAM genomic harmonized CPTAC3 ae7fd217-6e78-45d3-baf0-18fb46a143f6 31bba17b51beb606ab44b457b5106167 { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor' } +C3L-00278.RNA-Seq.R1_L003.T C3L-00278 GBM RNA-Seq tumor CPT0000430008 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L003_R1_001.fastq.gz 3807428132 FASTQ R1_L003 unaligned CPTAC3 8602e4ce-ab89-4841-aad5-97737a5dc01e 1ba061ebaa32446efa675ef85590c32e { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00278.RNA-Seq.R2_L003.T C3L-00278 GBM RNA-Seq tumor CPT0000430008 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L003_R2_001.fastq.gz 4097790684 FASTQ R2_L003 unaligned CPTAC3 3b826fe0-20cd-43f8-b81e-a8a38e7c8d01 468fee694ea2b02c8237c4a1de572e93 { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00278.RNA-Seq.transcriptome.T.hg38 C3L-00278 GBM RNA-Seq tumor CPT0000430008 69706fd1-eef0-46cb-bd99-d279cc4c5012.rna_seq.transcriptome.gdc_realn.bam 8306611498 BAM transcriptome harmonized CPTAC3 4adf03ca-765d-4c26-aa1f-c697c239f588 1c3c9c529e7af1e721bfafdb47e3340d { 'aliquot_tag': 'ALQ_ca2def39', 'gdc_sample_type': 'Primary Tumor' } C3L-00278.WGS.N C3L-00278 GBM WGS blood_normal CPT0000600002 CPT0000600002.WholeGenome.RP-1303.bam 77124375336 BAM aligned CPTAC3 f4e6a159-946e-4db4-aa2e-b0e2a6d9e46d bcf50f496c5174ace2ca61aeb58d9086 { 'aliquot_tag': 'ALQ_2090ddfc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00278.WGS.N.hg38 C3L-00278 GBM WGS blood_normal CPT0000600002 d4bac28e-6b0d-4f9b-8bb6-9785ccd8d8ec_gdc_realn.bam 115293749793 BAM harmonized CPTAC3 d799361e-0e2c-478f-a3b8-4e371dd47ea3 122ed6eb96112d0a4fd06a68e37b6ee2 { 'aliquot_tag': 'ALQ_2090ddfc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00278.WGS.T C3L-00278 GBM WGS tumor CPT0000430002 CPT0000430002.WholeGenome.RP-1303.bam 73086590689 BAM aligned CPTAC3 8fbc42cb-c98d-47d5-95b0-46286fdc6949 2784d8b2803ae0cb2f1e14e24d05eec7 { 'aliquot_tag': 'ALQ_2af80627', 'gdc_sample_type': 'Primary Tumor' } @@ -1741,12 +2168,12 @@ C3L-00279.miRNA-Seq.T C3L-00279 LUAD miRNA-Seq tumor CPT0082740007 181012_UNC32- C3L-00279.miRNA-Seq.T.hg38 C3L-00279 LUAD miRNA-Seq tumor CPT0082740007 192a1051-da95-41d3-9ca7-f2704c857f5d_mirnaseq_gdc_realn.bam 234785839 BAM harmonized CPTAC3 b36d884a-fa3c-4cab-ab28-d9fe444d32fd 86c7952b5e9670b9726b9be5f6f9970b { 'aliquot_tag': 'ALQ_2a5c568a', 'gdc_sample_type': 'Primary Tumor' } C3L-00279.RNA-Seq.chimeric.A.hg38 C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 26b67dc4-ea6e-4680-909c-49617b8ddf0f.rna_seq.chimeric.gdc_realn.bam 83062208 BAM chimeric harmonized CPTAC3 f5f62921-e2aa-4436-a7e8-60850f31affc cd2abe9d5049da5e9b433b255779e377 { 'aliquot_tag': 'ALQ_1afb1ccc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00279.RNA-Seq.chimeric.T.hg38 C3L-00279 LUAD RNA-Seq tumor CPT0082740007 c593be99-b0a6-4bb3-945a-932f2f60ab62.rna_seq.chimeric.gdc_realn.bam 100666935 BAM chimeric harmonized CPTAC3 33dd46e5-df91-4f8f-9e5e-c42bc33f5cc5 d03048da366074f5236f23d34f883984 { 'aliquot_tag': 'ALQ_2a5c568a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00279.RNA-Seq.genomic.A.hg38 C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 26b67dc4-ea6e-4680-909c-49617b8ddf0f.rna_seq.genomic.gdc_realn.bam 7580237623 BAM genomic harmonized CPTAC3 e63117d6-1932-48b8-a521-16b019646997 45489e68f8d747277b389a26a073f719 { 'aliquot_tag': 'ALQ_1afb1ccc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00279.RNA-Seq.genomic.T.hg38 C3L-00279 LUAD RNA-Seq tumor CPT0082740007 c593be99-b0a6-4bb3-945a-932f2f60ab62.rna_seq.genomic.gdc_realn.bam 9379188414 BAM genomic harmonized CPTAC3 c0915fa0-97a4-438d-b858-a4feb4d7f46e f0c9fc25fcb6f2641ce5650a69771719 { 'aliquot_tag': 'ALQ_2a5c568a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00279.RNA-Seq.R1_L003.T C3L-00279 LUAD RNA-Seq tumor CPT0082740007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 3888955869 FASTQ R1_L003 unaligned CPTAC3 d2e501fe-3f46-4ec5-9e88-6ac1ebb6cac7 3071b4e394db6d1eac51244b89afe4e0 { 'aliquot_tag': 'ALQ_2a5c568a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00279.RNA-Seq.R1_L005.A C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 171215_UNC32-K00270_0073_BHN3NFBBXX_TGACCA_S18_L005_R1_001.fastq.gz 3747727741 FASTQ R1_L005 unaligned CPTAC3 98db05ee-1271-42bc-84d4-5e6e88aa7a38 d00cf09e6305a2c7fdad358e0331d485 { 'aliquot_tag': 'ALQ_1afb1ccc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00279.RNA-Seq.R2_L003.T C3L-00279 LUAD RNA-Seq tumor CPT0082740007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 4222879215 FASTQ R2_L003 unaligned CPTAC3 2a89b090-c1d9-42a7-b163-5e7b9569b885 de1ddd51f4e424075a8b79c9fd051f37 { 'aliquot_tag': 'ALQ_2a5c568a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00279.RNA-Seq.R2_L005.A C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 171215_UNC32-K00270_0073_BHN3NFBBXX_TGACCA_S18_L005_R2_001.fastq.gz 4128870042 FASTQ R2_L005 unaligned CPTAC3 9d2b72b2-fcc1-4ab9-9f05-57bbd64646d9 6c06c2d73c84403ee106a7a9359e8241 { 'aliquot_tag': 'ALQ_1afb1ccc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00279.RNA-Seq.genomic.A.hg38 C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 26b67dc4-ea6e-4680-909c-49617b8ddf0f.rna_seq.genomic.gdc_realn.bam 7580237623 BAM genomic harmonized CPTAC3 12397568-ded5-4062-8efe-53a261cb21a5 45489e68f8d747277b389a26a073f719 { 'aliquot_tag': 'ALQ_1afb1ccc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00279.RNA-Seq.genomic.T.hg38 C3L-00279 LUAD RNA-Seq tumor CPT0082740007 c593be99-b0a6-4bb3-945a-932f2f60ab62.rna_seq.genomic.gdc_realn.bam 9379188414 BAM genomic harmonized CPTAC3 f8b4a8b9-b839-40bc-ac42-2c640d7e2ebf f0c9fc25fcb6f2641ce5650a69771719 { 'aliquot_tag': 'ALQ_2a5c568a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00279.RNA-Seq.R1_L003.T C3L-00279 LUAD RNA-Seq tumor CPT0082740007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 3888955869 FASTQ R1_L003 unaligned CPTAC3 d2e501fe-3f46-4ec5-9e88-6ac1ebb6cac7 3071b4e394db6d1eac51244b89afe4e0 { 'aliquot_tag': 'ALQ_2a5c568a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00279.RNA-Seq.R1_L005.A C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 171215_UNC32-K00270_0073_BHN3NFBBXX_TGACCA_S18_L005_R1_001.fastq.gz 3747727741 FASTQ R1_L005 unaligned CPTAC3 98db05ee-1271-42bc-84d4-5e6e88aa7a38 d00cf09e6305a2c7fdad358e0331d485 { 'aliquot_tag': 'ALQ_1afb1ccc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00279.RNA-Seq.R2_L003.T C3L-00279 LUAD RNA-Seq tumor CPT0082740007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 4222879215 FASTQ R2_L003 unaligned CPTAC3 2a89b090-c1d9-42a7-b163-5e7b9569b885 de1ddd51f4e424075a8b79c9fd051f37 { 'aliquot_tag': 'ALQ_2a5c568a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00279.RNA-Seq.R2_L005.A C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 171215_UNC32-K00270_0073_BHN3NFBBXX_TGACCA_S18_L005_R2_001.fastq.gz 4128870042 FASTQ R2_L005 unaligned CPTAC3 9d2b72b2-fcc1-4ab9-9f05-57bbd64646d9 6c06c2d73c84403ee106a7a9359e8241 { 'aliquot_tag': 'ALQ_1afb1ccc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-00279.RNA-Seq.transcriptome.A.hg38 C3L-00279 LUAD RNA-Seq tissue_normal CPT0082770006 26b67dc4-ea6e-4680-909c-49617b8ddf0f.rna_seq.transcriptome.gdc_realn.bam 10466754934 BAM transcriptome harmonized CPTAC3 ed7c6441-9e9a-4274-89eb-d4b226f5c5b2 bc1ae606fcc1a5c5881360755bbe0e95 { 'aliquot_tag': 'ALQ_1afb1ccc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00279.RNA-Seq.transcriptome.T.hg38 C3L-00279 LUAD RNA-Seq tumor CPT0082740007 c593be99-b0a6-4bb3-945a-932f2f60ab62.rna_seq.transcriptome.gdc_realn.bam 10361892037 BAM transcriptome harmonized CPTAC3 001c022d-cc33-42ac-82a5-f27163f80e1c e394db813ed07eb2b6a718bc944bbbf7 { 'aliquot_tag': 'ALQ_2a5c568a', 'gdc_sample_type': 'Primary Tumor' } C3L-00279.WGS.A C3L-00279 LUAD WGS tissue_normal CPT0082770009 CPT0082770009.WholeGenome.RP-1303.bam 56073138564 BAM aligned CPTAC3 822f400f-0476-4e58-bfb5-fd796b3ef982 ef854be8bfd311bf79101178f62da7aa { 'aliquot_tag': 'ALQ_8a44015d', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1765,11 +2192,11 @@ C3L-00349.MethArray.Green.T C3L-00349 GBM Methylation Array tumor CPT0000490007 C3L-00349.MethArray.Red.T C3L-00349 GBM Methylation Array tumor CPT0000490007 202184900128_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 91d1aa67-5e2a-42b5-8aab-baa8cfab493f 67659026d020c41b74940ee3de64b858 { 'aliquot_tag': 'ALQ_1022ea09', 'gdc_sample_type': 'Primary Tumor' } C3L-00349.miRNA-Seq.T C3L-00349 GBM miRNA-Seq tumor CPT0000490005 181113_UNC31-K00269_0164_AH23NNBBXY_CTATAC_S15_L001_R1_001.unaln.bam 253757619 BAM unaligned CPTAC3 c301ca06-334d-418d-9fa5-2e870de7a449 ddb6fc0148a502939e54ce67910c03a9 { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor' } C3L-00349.miRNA-Seq.T.hg38 C3L-00349 GBM miRNA-Seq tumor CPT0000490005 24cd1e35-88a1-44e5-89ce-62a99e8e775e_mirnaseq_gdc_realn.bam 278459513 BAM harmonized CPTAC3 cb875f66-89d2-48fd-9a3a-c9d98684952c e63314959f5bd04184c3062283591d3b { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor' } -C3L-00349.RNA-Seq.chimeric.T.hg38 C3L-00349 GBM RNA-Seq tumor CPT0000490005 43c9672b-18e0-4291-890c-5d8f609a9a5b.rna_seq.chimeric.gdc_realn.bam 68591590 BAM chimeric harmonized CPTAC3 2bce672a-ae1e-47fe-a3c2-5dab63ffebd0 579bbb08cdf4f0755199dc5d1c00c073 { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor' } -C3L-00349.RNA-Seq.genomic.T.hg38 C3L-00349 GBM RNA-Seq tumor CPT0000490005 43c9672b-18e0-4291-890c-5d8f609a9a5b.rna_seq.genomic.gdc_realn.bam 8747944029 BAM genomic harmonized CPTAC3 9083be41-d68a-461f-b988-87dce67e20a3 3380e14823defc442ca9e1ddd5dc5abd { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor' } -C3L-00349.RNA-Seq.R1_L005.T C3L-00349 GBM RNA-Seq tumor CPT0000490005 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L005_R1_001.fastq.gz 4085911014 FASTQ R1_L005 unaligned CPTAC3 511be7f0-f8ca-4a44-adef-caae528c002f 5a47974de771ea5e7c5572ec54bb902a { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor' } -C3L-00349.RNA-Seq.R2_L005.T C3L-00349 GBM RNA-Seq tumor CPT0000490005 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L005_R2_001.fastq.gz 4385424889 FASTQ R2_L005 unaligned CPTAC3 68b7a3ef-5a6b-4272-ae90-aa9b8dd30f42 3afe0074e1e6f54846a2c2a11df9748c { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor' } -C3L-00349.RNA-Seq.transcriptome.T.hg38 C3L-00349 GBM RNA-Seq tumor CPT0000490005 43c9672b-18e0-4291-890c-5d8f609a9a5b.rna_seq.transcriptome.gdc_realn.bam 10583468303 BAM transcriptome harmonized CPTAC3 16fc0925-a4a7-4302-9ed0-2d4027343d08 7dc7c3048f361db40521613315f1ccdf { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor' } +C3L-00349.RNA-Seq.chimeric.T.hg38 C3L-00349 GBM RNA-Seq tumor CPT0000490005 74f970c0-fe45-4596-9dcb-cbb12220a5d4.rna_seq.chimeric.gdc_realn.bam 68567006 BAM chimeric harmonized CPTAC3 7a6eaf7c-d9fd-4082-b6a0-3e76dd70a7e7 db91fd7ae15ab7a9c41032d400161118 { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor' } +C3L-00349.RNA-Seq.genomic.T.hg38 C3L-00349 GBM RNA-Seq tumor CPT0000490005 74f970c0-fe45-4596-9dcb-cbb12220a5d4.rna_seq.genomic.gdc_realn.bam 8749396957 BAM genomic harmonized CPTAC3 f041a2a3-6c40-498c-8113-ed2e4534cbef ef0acf33acc153fd8452932736ee1bbb { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor' } +C3L-00349.RNA-Seq.R1_L005.T C3L-00349 GBM RNA-Seq tumor CPT0000490005 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L005_R1_001.fastq.gz 4085911014 FASTQ R1_L005 unaligned CPTAC3 511be7f0-f8ca-4a44-adef-caae528c002f 5a47974de771ea5e7c5572ec54bb902a { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00349.RNA-Seq.R2_L005.T C3L-00349 GBM RNA-Seq tumor CPT0000490005 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L005_R2_001.fastq.gz 4385424889 FASTQ R2_L005 unaligned CPTAC3 68b7a3ef-5a6b-4272-ae90-aa9b8dd30f42 3afe0074e1e6f54846a2c2a11df9748c { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-00349.RNA-Seq.transcriptome.T.hg38 C3L-00349 GBM RNA-Seq tumor CPT0000490005 74f970c0-fe45-4596-9dcb-cbb12220a5d4.rna_seq.transcriptome.gdc_realn.bam 12231566487 BAM transcriptome harmonized CPTAC3 8fd6386f-5197-44c4-bf3c-ddfa6ca088e3 c5b2f0e64dee3a9a94d48ebc67646593 { 'aliquot_tag': 'ALQ_fe2c8b25', 'gdc_sample_type': 'Primary Tumor' } C3L-00349.WGS.N C3L-00349 GBM WGS blood_normal CPT0000620002 CPT0000620002.WholeGenome.RP-1303.bam 58247756770 BAM aligned CPTAC3 f379500b-0b1d-44c3-9e9c-ed79ebb99117 9a6528cbd42e219bf268709704ab4ee7 { 'aliquot_tag': 'ALQ_5a508e9c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00349.WGS.N.hg38 C3L-00349 GBM WGS blood_normal CPT0000620002 5996a9d5-3f37-40fd-8c62-32549e1189fb_gdc_realn.bam 88572225867 BAM harmonized CPTAC3 4b66d491-66d9-463b-8def-7f9ce1152199 b2bf92695072cc0762969a89290a00dd { 'aliquot_tag': 'ALQ_5a508e9c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00349.WGS.T C3L-00349 GBM WGS tumor CPT0000490007 CPT0000490007.WholeGenome.RP-1303.bam 79082672786 BAM aligned CPTAC3 9a06dc6c-cb5f-461f-a1f4-cabddac38cd4 772c07573dbb4a9feca3d9d179046533 { 'aliquot_tag': 'ALQ_1022ea09', 'gdc_sample_type': 'Primary Tumor' } @@ -1783,9 +2210,9 @@ C3L-00356.ADD_eac742a4.miRNA-Seq.T.hg38 C3L-00356 UCEC miRNA-Seq tumor CPT000213 C3L-00356.MethArray.Green.T C3L-00356 UCEC Methylation Array tumor CPT0002130009 202178770100_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 01f9e9ac-db9c-4837-90ba-75355af366a7 f2afb3a50b1b8ef9fe91e7110e61ddc7 { 'aliquot_tag': 'ALQ_7a785f35', 'gdc_sample_type': 'Primary Tumor' } C3L-00356.MethArray.Red.T C3L-00356 UCEC Methylation Array tumor CPT0002130009 202178770100_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 4837df20-40a4-4d73-8c5c-2a14cd71cb0a d304a18a6fe94182844258a201119f83 { 'aliquot_tag': 'ALQ_7a785f35', 'gdc_sample_type': 'Primary Tumor' } C3L-00356.RNA-Seq.chimeric.T.hg38 C3L-00356 UCEC RNA-Seq tumor CPT0002130013 5eb959a6-6128-4461-8789-c7c96077f79b.rna_seq.chimeric.gdc_realn.bam 104640104 BAM chimeric harmonized CPTAC3 9ddb2b73-9be2-48e1-a16e-5344c4ad3024 10b07d21d2659886b8f647c0370fca6d { 'aliquot_tag': 'ALQ_83b6876a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00356.RNA-Seq.genomic.T.hg38 C3L-00356 UCEC RNA-Seq tumor CPT0002130013 5eb959a6-6128-4461-8789-c7c96077f79b.rna_seq.genomic.gdc_realn.bam 13582643997 BAM genomic harmonized CPTAC3 f8f0a766-2370-46f6-83d8-3d21f04df960 87a4ddf5cb17c31ee3ed03fa4b6f4caa { 'aliquot_tag': 'ALQ_83b6876a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00356.RNA-Seq.R1_L004.T C3L-00356 UCEC RNA-Seq tumor CPT0002130013 171011_UNC31-K00269_0086_AHLJLCBBXX_CGATGT_S11_L004_R1_001.fastq.gz 5604511930 FASTQ R1_L004 unaligned CPTAC3 4b2a33c2-3d9a-405c-9d10-049bed615f1d 09115960c3f3635f2ee6960cfa86f8b8 { 'aliquot_tag': 'ALQ_83b6876a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00356.RNA-Seq.R2_L004.T C3L-00356 UCEC RNA-Seq tumor CPT0002130013 171011_UNC31-K00269_0086_AHLJLCBBXX_CGATGT_S11_L004_R2_001.fastq.gz 6002121294 FASTQ R2_L004 unaligned CPTAC3 2e91202d-2403-4619-8111-5f26fdf879b1 b0da9f1e031dd59cc019bcc05eaad954 { 'aliquot_tag': 'ALQ_83b6876a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00356.RNA-Seq.genomic.T.hg38 C3L-00356 UCEC RNA-Seq tumor CPT0002130013 5eb959a6-6128-4461-8789-c7c96077f79b.rna_seq.genomic.gdc_realn.bam 13582643997 BAM genomic harmonized CPTAC3 2ee1a0a4-cfe5-4f08-a856-4dda30d08cb1 87a4ddf5cb17c31ee3ed03fa4b6f4caa { 'aliquot_tag': 'ALQ_83b6876a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00356.RNA-Seq.R1_L004.T C3L-00356 UCEC RNA-Seq tumor CPT0002130013 171011_UNC31-K00269_0086_AHLJLCBBXX_CGATGT_S11_L004_R1_001.fastq.gz 5604511930 FASTQ R1_L004 unaligned CPTAC3 4b2a33c2-3d9a-405c-9d10-049bed615f1d 09115960c3f3635f2ee6960cfa86f8b8 { 'aliquot_tag': 'ALQ_83b6876a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00356.RNA-Seq.R2_L004.T C3L-00356 UCEC RNA-Seq tumor CPT0002130013 171011_UNC31-K00269_0086_AHLJLCBBXX_CGATGT_S11_L004_R2_001.fastq.gz 6002121294 FASTQ R2_L004 unaligned CPTAC3 2e91202d-2403-4619-8111-5f26fdf879b1 b0da9f1e031dd59cc019bcc05eaad954 { 'aliquot_tag': 'ALQ_83b6876a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-00356.RNA-Seq.transcriptome.T.hg38 C3L-00356 UCEC RNA-Seq tumor CPT0002130013 5eb959a6-6128-4461-8789-c7c96077f79b.rna_seq.transcriptome.gdc_realn.bam 11120549827 BAM transcriptome harmonized CPTAC3 d2404a74-0221-4f69-ad88-eb2f5298a439 af7d6f69bbd420873811f88343cb35ec { 'aliquot_tag': 'ALQ_83b6876a', 'gdc_sample_type': 'Primary Tumor' } C3L-00356.WGS.N C3L-00356 UCEC WGS blood_normal CPT0004350002 CPT0004350002.WholeGenome.RP-1303.bam 60372526845 BAM aligned CPTAC3 33cb8f29-0dd7-407b-9ca2-a361b0ecaab7 df40edaaa1c6d8c3a95b610eef8ef255 { 'aliquot_tag': 'ALQ_4cf2e72c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00356.WGS.N.hg38 C3L-00356 UCEC WGS blood_normal CPT0004350002 0d1a19ed-b1f4-4d0f-9eff-5922afcb6cbe_gdc_realn.bam 87764016454 BAM harmonized CPTAC3 8b2d66ef-8fc7-47b4-9717-2dc51259c0a6 808b584f1416372c7fdd76f3baed4b97 { 'aliquot_tag': 'ALQ_4cf2e72c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -1800,12 +2227,15 @@ C3L-00358.MethArray.Red.T C3L-00358 UCEC Methylation Array tumor CPT0002210008 2 C3L-00358.miRNA-Seq.T C3L-00358 UCEC miRNA-Seq tumor CPT0002210005 181012_UNC32-K00270_0124_AH223CBBXY_CCGTCC_S37_L002_R1_001.unaln.bam 221821577 BAM unaligned CPTAC3 32ab23db-669b-4c4f-83e0-dd2394439677 6779356f6ad79bd5b3cfc85fe30ba9e6 { 'aliquot_tag': 'ALQ_8f9a32d0', 'gdc_sample_type': 'Primary Tumor' } C3L-00358.miRNA-Seq.T.hg38 C3L-00358 UCEC miRNA-Seq tumor CPT0002210005 79817c85-0532-476f-808f-7898a666d88e_mirnaseq_gdc_realn.bam 240296343 BAM harmonized CPTAC3 b698d69a-25d6-42e5-a6f0-1126e960daab c81cc2012c5647af4ffc31d2b139ded9 { 'aliquot_tag': 'ALQ_8f9a32d0', 'gdc_sample_type': 'Primary Tumor' } C3L-00358.RNA-Seq.chimeric.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0002210005 fcc5e873-e31f-4d0f-88af-081bb08a4bcb.rna_seq.chimeric.gdc_realn.bam 174960065 BAM chimeric harmonized CPTAC3 9f3d0be2-4644-4560-8e45-82643657157b 40d9d238ce6b1c8a2ac409860a302553 { 'aliquot_tag': 'ALQ_8f9a32d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-00358.RNA-Seq.genomic.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0002210005 fcc5e873-e31f-4d0f-88af-081bb08a4bcb.rna_seq.genomic.gdc_realn.bam 7795991252 BAM genomic harmonized CPTAC3 75800a54-ca3a-489b-bdb0-88df94a3de5b b15e8ed0baf632c089d93d1d23de422d { 'aliquot_tag': 'ALQ_8f9a32d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-00358.RNA-Seq.R1_L001.T C3L-00358 UCEC RNA-Seq tumor CPT0002210005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTTTCG_S2_L001_R1_001.fastq.gz 3627523273 FASTQ R1_L001 unaligned CPTAC3 9cb3b6ce-7b2a-4225-b0e7-d32d47171740 8b45aa836ca5d2eb4c9973f35f084ceb { 'aliquot_tag': 'ALQ_8f9a32d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-00358.RNA-Seq.R1_.T C3L-00358 UCEC RNA-Seq tumor CPT0349590001 20210714_P1_E2_WB7988_plate1_S50_R1_001.fastq.gz 8061916888 FASTQ R1_ unaligned CPTAC3 66b6b1d6-7e9d-492f-8570-d85868a65f2b 733a6c82b4e61adc47619b4ad40af325 { 'aliquot_tag': 'ALQ_1a42eb75', 'gdc_sample_type': 'Primary Tumor' } -C3L-00358.RNA-Seq.R2_L001.T C3L-00358 UCEC RNA-Seq tumor CPT0002210005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTTTCG_S2_L001_R2_001.fastq.gz 4010917518 FASTQ R2_L001 unaligned CPTAC3 e9a087df-10b2-498e-90d3-cd60747088b8 61239bd1607ed0691c3e77b6b8b4cf69 { 'aliquot_tag': 'ALQ_8f9a32d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-00358.RNA-Seq.R2_.T C3L-00358 UCEC RNA-Seq tumor CPT0349590001 20210714_P1_E2_WB7988_plate1_S50_R2_001.fastq.gz 8453682484 FASTQ R2_ unaligned CPTAC3 d8b10f25-cf80-40cc-a3fe-e742556dfbd3 f9a993f886d3a439bcedb2ba34287223 { 'aliquot_tag': 'ALQ_1a42eb75', 'gdc_sample_type': 'Primary Tumor' } +C3L-00358.RNA-Seq.chimeric.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0349590001 abfa033a-c014-4be4-823b-a542f8639487.rna_seq.chimeric.gdc_realn.bam 225422123 BAM chimeric harmonized CPTAC3 ebe80478-0721-4dfc-a87a-ad3af1900e20 dd0eee63ac242092ce28af63745a8768 { 'aliquot_tag': 'ALQ_1a42eb75', 'gdc_sample_type': 'Primary Tumor' } +C3L-00358.RNA-Seq.genomic.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0002210005 fcc5e873-e31f-4d0f-88af-081bb08a4bcb.rna_seq.genomic.gdc_realn.bam 7795991252 BAM genomic harmonized CPTAC3 7a112595-0e41-48b1-9116-98230107f6e9 b15e8ed0baf632c089d93d1d23de422d { 'aliquot_tag': 'ALQ_8f9a32d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-00358.RNA-Seq.genomic.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0349590001 abfa033a-c014-4be4-823b-a542f8639487.rna_seq.genomic.gdc_realn.bam 12651700339 BAM genomic harmonized CPTAC3 b703471a-e131-4d58-843d-cf842c52f046 5c7783de6480b794de9487fc210465c9 { 'aliquot_tag': 'ALQ_1a42eb75', 'gdc_sample_type': 'Primary Tumor' } +C3L-00358.RNA-Seq.R1_L001.T C3L-00358 UCEC RNA-Seq tumor CPT0002210005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTTTCG_S2_L001_R1_001.fastq.gz 3627523273 FASTQ R1_L001 unaligned CPTAC3 9cb3b6ce-7b2a-4225-b0e7-d32d47171740 8b45aa836ca5d2eb4c9973f35f084ceb { 'aliquot_tag': 'ALQ_8f9a32d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00358.RNA-Seq.R2_L001.T C3L-00358 UCEC RNA-Seq tumor CPT0002210005 170818_UNC32-K00270_0050_AHL2FHBBXX_GTTTCG_S2_L001_R2_001.fastq.gz 4010917518 FASTQ R2_L001 unaligned CPTAC3 e9a087df-10b2-498e-90d3-cd60747088b8 61239bd1607ed0691c3e77b6b8b4cf69 { 'aliquot_tag': 'ALQ_8f9a32d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00358.RNA-Seq.T C3L-00358 UCEC RNA-Seq tumor CPT0349590001 20210714_P1_E2_WB7988_plate1_S50_R1_001.fastq.gz 8061916888 FASTQ unaligned CPTAC3 66b6b1d6-7e9d-492f-8570-d85868a65f2b 733a6c82b4e61adc47619b4ad40af325 +C3L-00358.RNA-Seq.T C3L-00358 UCEC RNA-Seq tumor CPT0349590001 20210714_P1_E2_WB7988_plate1_S50_R2_001.fastq.gz 8453682484 FASTQ unaligned CPTAC3 d8b10f25-cf80-40cc-a3fe-e742556dfbd3 f9a993f886d3a439bcedb2ba34287223 C3L-00358.RNA-Seq.transcriptome.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0002210005 fcc5e873-e31f-4d0f-88af-081bb08a4bcb.rna_seq.transcriptome.gdc_realn.bam 7751677585 BAM transcriptome harmonized CPTAC3 8de1e515-c337-4ce1-9747-d4257e0f6ed9 ca2a53a402e536e103b733de21ded148 { 'aliquot_tag': 'ALQ_8f9a32d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-00358.RNA-Seq.transcriptome.T.hg38 C3L-00358 UCEC RNA-Seq tumor CPT0349590001 abfa033a-c014-4be4-823b-a542f8639487.rna_seq.transcriptome.gdc_realn.bam 8266821493 BAM transcriptome harmonized CPTAC3 6431c0af-6fd1-4d01-9cdb-0defdc5c8d5d f7e53e39ba5869e4d89b42e3aa1c9e93 { 'aliquot_tag': 'ALQ_1a42eb75', 'gdc_sample_type': 'Primary Tumor' } C3L-00358.WGS.N C3L-00358 UCEC WGS blood_normal CPT0004360002 CPT0004360002.WholeGenome.RP-1303.bam 57760979190 BAM aligned CPTAC3 d9717e6e-907b-43b2-be30-373b71c15f45 53e48324486fb3d19a579e5a187275f6 { 'aliquot_tag': 'ALQ_b529dfc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00358.WGS.N.hg38 C3L-00358 UCEC WGS blood_normal CPT0004360002 8927cd25-7348-4319-8a9b-248fc0bc8e56_gdc_realn.bam 82314231902 BAM harmonized CPTAC3 bb62f2d2-b146-490a-bc13-b209c265d28d 836ee3fb801a75e299dd150fd9cb9fb5 { 'aliquot_tag': 'ALQ_b529dfc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00358.WGS.T C3L-00358 UCEC WGS tumor CPT0002210008 CPT0002210008.WholeGenome.RP-1303.bam 63609725003 BAM aligned CPTAC3 02106d84-e6b8-465a-a063-a4e0e156d8c0 9b17dd421f56ac06ae0b1d844618b857 { 'aliquot_tag': 'ALQ_f12b4e6d', 'gdc_sample_type': 'Primary Tumor' } @@ -1820,8 +2250,8 @@ C3L-00359.miRNA-Seq.T C3L-00359 CCRCC miRNA-Seq tumor CPT0002270005 181012_UNC32 C3L-00359.miRNA-Seq.T.hg38 C3L-00359 CCRCC miRNA-Seq tumor CPT0002270005 7208770e-fb7d-4ba3-8fe9-f457970e5a93_mirnaseq_gdc_realn.bam 206009268 BAM harmonized CPTAC3 650ac773-2699-4276-8545-6d688853fe1b f3ae69bbe4b864e45fcf5bc34689c983 { 'aliquot_tag': 'ALQ_dac770', 'gdc_sample_type': 'Primary Tumor' } C3L-00359.RNA-Seq.chimeric.T.hg38 C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 7cb20089-aa6f-43ba-99d9-17b2a06382b9.rna_seq.chimeric.gdc_realn.bam 165366678 BAM chimeric harmonized CPTAC3 40f3b415-51a0-4663-8538-1283aaefe8f9 42c8e6dc2bd48b1e987a86567a7cdfc2 { 'aliquot_tag': 'ALQ_dac770', 'gdc_sample_type': 'Primary Tumor' } C3L-00359.RNA-Seq.genomic.T.hg38 C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 7cb20089-aa6f-43ba-99d9-17b2a06382b9.rna_seq.genomic.gdc_realn.bam 8466214599 BAM genomic harmonized CPTAC3 cf3e24cf-45bc-4202-8c95-392fceaacd63 9737b1ef704b8c09ffde2c2ea7625ead { 'aliquot_tag': 'ALQ_dac770', 'gdc_sample_type': 'Primary Tumor' } -C3L-00359.RNA-Seq.R1_L001.T C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 170818_UNC32-K00270_0050_AHL2FHBBXX_CGTACG_S1_L001_R1_001.fastq.gz 4039086396 FASTQ R1_L001 unaligned CPTAC3 c073cb50-b34c-44c9-9cd8-8f208cead367 6c29c74f79ce54494d283377e1397496 { 'aliquot_tag': 'ALQ_dac770', 'gdc_sample_type': 'Primary Tumor' } -C3L-00359.RNA-Seq.R2_L001.T C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 170818_UNC32-K00270_0050_AHL2FHBBXX_CGTACG_S1_L001_R2_001.fastq.gz 4454016060 FASTQ R2_L001 unaligned CPTAC3 031a45c7-e9b4-40e1-b98c-b8beed82aceb cd054cad63ab3c3e232d253d89d8a078 { 'aliquot_tag': 'ALQ_dac770', 'gdc_sample_type': 'Primary Tumor' } +C3L-00359.RNA-Seq.R1_L001.T C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 170818_UNC32-K00270_0050_AHL2FHBBXX_CGTACG_S1_L001_R1_001.fastq.gz 4039086396 FASTQ R1_L001 unaligned CPTAC3 c073cb50-b34c-44c9-9cd8-8f208cead367 6c29c74f79ce54494d283377e1397496 { 'aliquot_tag': 'ALQ_dac770', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00359.RNA-Seq.R2_L001.T C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 170818_UNC32-K00270_0050_AHL2FHBBXX_CGTACG_S1_L001_R2_001.fastq.gz 4454016060 FASTQ R2_L001 unaligned CPTAC3 031a45c7-e9b4-40e1-b98c-b8beed82aceb cd054cad63ab3c3e232d253d89d8a078 { 'aliquot_tag': 'ALQ_dac770', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-00359.RNA-Seq.transcriptome.T.hg38 C3L-00359 CCRCC RNA-Seq tumor CPT0002270005 7cb20089-aa6f-43ba-99d9-17b2a06382b9.rna_seq.transcriptome.gdc_realn.bam 11666861023 BAM transcriptome harmonized CPTAC3 4647ae5d-25a5-48e5-8f15-0c3d444a6386 8c9ba466d86dd1f968d95059f5f8b70a { 'aliquot_tag': 'ALQ_dac770', 'gdc_sample_type': 'Primary Tumor' } C3L-00359.WGS.N C3L-00359 CCRCC WGS blood_normal CPT0004370002 CPT0004370002.WholeGenome.RP-1303.bam 57925172115 BAM aligned CPTAC3 e04ccac1-20a8-4b59-9734-8faa65a50ec4 8499ddb19b7b7bed443def520446675f { 'aliquot_tag': 'ALQ_3632b44c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00359.WGS.N.hg38 C3L-00359 CCRCC WGS blood_normal CPT0004370002 20ce17ce-fd19-4ec9-b64a-e95dd78aa155_gdc_realn.bam 84679395846 BAM harmonized CPTAC3 933fff32-75ec-45f1-a2d4-8ac2a99fdd60 2dcf143dc2534b72d14f4a88253f42d1 { 'aliquot_tag': 'ALQ_3632b44c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -1841,12 +2271,12 @@ C3L-00360.miRNA-Seq.T C3L-00360 CCRCC miRNA-Seq tumor CPT0002350005 181012_UNC32 C3L-00360.miRNA-Seq.T.hg38 C3L-00360 CCRCC miRNA-Seq tumor CPT0002350005 8cb2643c-ddee-478d-91cc-62e00ad4cfad_mirnaseq_gdc_realn.bam 276311003 BAM harmonized CPTAC3 76e65f35-c7fe-4b13-8458-910c428b7fc0 fb225c0db2f1522e2cc4b07d132e6802 { 'aliquot_tag': 'ALQ_b14647b5', 'gdc_sample_type': 'Primary Tumor' } C3L-00360.RNA-Seq.chimeric.A.hg38 C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 cd09fa78-1bef-4525-a541-d392cdb41619.rna_seq.chimeric.gdc_realn.bam 67214306 BAM chimeric harmonized CPTAC3 566dc661-0b18-4cac-abc7-97553b9edbe8 85c3f46f649931972d1e18bbc03ca2d9 { 'aliquot_tag': 'ALQ_528f456f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00360.RNA-Seq.chimeric.T.hg38 C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 87873a4c-ed8b-4ebe-b917-d32dc7fdffc4.rna_seq.chimeric.gdc_realn.bam 108781022 BAM chimeric harmonized CPTAC3 6e14be8a-c0a6-475c-9920-63e63c221e8c 182014c2fed45a19b4a521c6796fa78e { 'aliquot_tag': 'ALQ_b14647b5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00360.RNA-Seq.genomic.A.hg38 C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 cd09fa78-1bef-4525-a541-d392cdb41619.rna_seq.genomic.gdc_realn.bam 6503036850 BAM genomic harmonized CPTAC3 eee5c86b-e5b3-4f53-be5f-3929d2d54c63 83eaff064e52da658ecede7ca76fed81 { 'aliquot_tag': 'ALQ_528f456f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00360.RNA-Seq.genomic.T.hg38 C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 87873a4c-ed8b-4ebe-b917-d32dc7fdffc4.rna_seq.genomic.gdc_realn.bam 8256258590 BAM genomic harmonized CPTAC3 5b4ad5ca-6c4a-4982-b0f4-e9ea9fbd20e8 7e0296ebc3da5695c52a347e9f77b6a9 { 'aliquot_tag': 'ALQ_b14647b5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00360.RNA-Seq.R1_L001.T C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 170818_UNC32-K00270_0050_AHL2FHBBXX_GAGTGG_S4_L001_R1_001.fastq.gz 4047258213 FASTQ R1_L001 unaligned CPTAC3 612b312e-cad7-4343-a5de-70aa004a2f76 6f2a787d860058409cb0e7ef613f145a { 'aliquot_tag': 'ALQ_b14647b5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00360.RNA-Seq.R1_L006.A C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 171208_UNC32-K00270_0071_BHN7K5BBXX_CAGATC_S50_L006_R1_001.fastq.gz 3411320093 FASTQ R1_L006 unaligned CPTAC3 c828fde4-aec4-4a4c-8f3b-40850c03004e d236c97e9b2ef882ef81ad12ae94bd47 { 'aliquot_tag': 'ALQ_528f456f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00360.RNA-Seq.R2_L001.T C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 170818_UNC32-K00270_0050_AHL2FHBBXX_GAGTGG_S4_L001_R2_001.fastq.gz 4427141226 FASTQ R2_L001 unaligned CPTAC3 a51b7537-6e96-4915-a318-2635338a0c86 775817174fe529fa7c17bb437491daf1 { 'aliquot_tag': 'ALQ_b14647b5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00360.RNA-Seq.R2_L006.A C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 171208_UNC32-K00270_0071_BHN7K5BBXX_CAGATC_S50_L006_R2_001.fastq.gz 3647868189 FASTQ R2_L006 unaligned CPTAC3 b6786e42-a506-498d-9978-99028e70cf73 3b459cb22134a2ef1e5b1743be6b6ec1 { 'aliquot_tag': 'ALQ_528f456f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00360.RNA-Seq.genomic.A.hg38 C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 cd09fa78-1bef-4525-a541-d392cdb41619.rna_seq.genomic.gdc_realn.bam 6503036850 BAM genomic harmonized CPTAC3 82f30976-bcf5-4152-848f-6fa1a687873f 83eaff064e52da658ecede7ca76fed81 { 'aliquot_tag': 'ALQ_528f456f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00360.RNA-Seq.genomic.T.hg38 C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 87873a4c-ed8b-4ebe-b917-d32dc7fdffc4.rna_seq.genomic.gdc_realn.bam 8256258590 BAM genomic harmonized CPTAC3 e4a85fd2-101f-43ca-a2d8-dc5e20dad70a 7e0296ebc3da5695c52a347e9f77b6a9 { 'aliquot_tag': 'ALQ_b14647b5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00360.RNA-Seq.R1_L001.T C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 170818_UNC32-K00270_0050_AHL2FHBBXX_GAGTGG_S4_L001_R1_001.fastq.gz 4047258213 FASTQ R1_L001 unaligned CPTAC3 612b312e-cad7-4343-a5de-70aa004a2f76 6f2a787d860058409cb0e7ef613f145a { 'aliquot_tag': 'ALQ_b14647b5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00360.RNA-Seq.R1_L006.A C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 171208_UNC32-K00270_0071_BHN7K5BBXX_CAGATC_S50_L006_R1_001.fastq.gz 3411320093 FASTQ R1_L006 unaligned CPTAC3 c828fde4-aec4-4a4c-8f3b-40850c03004e d236c97e9b2ef882ef81ad12ae94bd47 { 'aliquot_tag': 'ALQ_528f456f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-00360.RNA-Seq.R2_L001.T C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 170818_UNC32-K00270_0050_AHL2FHBBXX_GAGTGG_S4_L001_R2_001.fastq.gz 4427141226 FASTQ R2_L001 unaligned CPTAC3 a51b7537-6e96-4915-a318-2635338a0c86 775817174fe529fa7c17bb437491daf1 { 'aliquot_tag': 'ALQ_b14647b5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00360.RNA-Seq.R2_L006.A C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 171208_UNC32-K00270_0071_BHN7K5BBXX_CAGATC_S50_L006_R2_001.fastq.gz 3647868189 FASTQ R2_L006 unaligned CPTAC3 b6786e42-a506-498d-9978-99028e70cf73 3b459cb22134a2ef1e5b1743be6b6ec1 { 'aliquot_tag': 'ALQ_528f456f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3L-00360.RNA-Seq.transcriptome.A.hg38 C3L-00360 CCRCC RNA-Seq tissue_normal CPT0002370006 cd09fa78-1bef-4525-a541-d392cdb41619.rna_seq.transcriptome.gdc_realn.bam 7964194482 BAM transcriptome harmonized CPTAC3 f5cf43a4-ae4a-4cd1-9d2f-7a42715095fe df966c7a565b89ed846cc62b123d3b95 { 'aliquot_tag': 'ALQ_528f456f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00360.RNA-Seq.transcriptome.T.hg38 C3L-00360 CCRCC RNA-Seq tumor CPT0002350005 87873a4c-ed8b-4ebe-b917-d32dc7fdffc4.rna_seq.transcriptome.gdc_realn.bam 10523403055 BAM transcriptome harmonized CPTAC3 df64cd3c-c39b-4b85-9b47-463b5b38555c b320006d620da8b11ca611b2c75ff5ee { 'aliquot_tag': 'ALQ_b14647b5', 'gdc_sample_type': 'Primary Tumor' } C3L-00360.WGS.A C3L-00360 CCRCC WGS tissue_normal CPT0002370009 CPT0002370009.WholeGenome.RP-1303.bam 54772091219 BAM aligned CPTAC3 205e6833-4e12-4b82-88ac-9dc08bbad304 d4a99bf0f238c043858c82cc060486b1 { 'aliquot_tag': 'ALQ_c23058fe', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1869,16 +2299,19 @@ C3L-00361.miRNA-Seq.T C3L-00361 UCEC miRNA-Seq tumor CPT0002430005 181113_UNC31- C3L-00361.miRNA-Seq.T.hg38 C3L-00361 UCEC miRNA-Seq tumor CPT0002430005 702cf184-69e8-49dd-a676-8928674e9e30_mirnaseq_gdc_realn.bam 241346400 BAM harmonized CPTAC3 4c39a2c1-330e-4f47-9147-9b8e48971ac0 3e726552f754405a72a5d4c103d59075 { 'aliquot_tag': 'ALQ_230382ad', 'gdc_sample_type': 'Primary Tumor' } C3L-00361.RNA-Seq.chimeric.A.hg38 C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 fbc0e240-4531-4aee-bd35-b2aa4bcc926b.rna_seq.chimeric.gdc_realn.bam 83181310 BAM chimeric harmonized CPTAC3 7e21bfab-1f32-4b0c-86c3-9af2f9fea9a3 9dd36e3ee13b1beeec44be7ca845937d { 'aliquot_tag': 'ALQ_354a26b7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00361.RNA-Seq.chimeric.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0002430005 85990901-db98-4a0f-8942-0285ee687462.rna_seq.chimeric.gdc_realn.bam 72068577 BAM chimeric harmonized CPTAC3 64bde912-869f-465d-821c-cfe8a17cb9d0 ae6c0469bf828f4e4dcab0b6c192dd21 { 'aliquot_tag': 'ALQ_230382ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-00361.RNA-Seq.genomic.A.hg38 C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 fbc0e240-4531-4aee-bd35-b2aa4bcc926b.rna_seq.genomic.gdc_realn.bam 8318240035 BAM genomic harmonized CPTAC3 93f206f3-3c19-480b-8b5b-08802062699b 2b85d4ee144f79a9cbebb8b34d5ef825 { 'aliquot_tag': 'ALQ_354a26b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00361.RNA-Seq.genomic.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0002430005 85990901-db98-4a0f-8942-0285ee687462.rna_seq.genomic.gdc_realn.bam 8835704503 BAM genomic harmonized CPTAC3 ee1956be-abad-4404-8006-0f7b86c55d3e 17cd2af7d782459757c71503c5ddf879 { 'aliquot_tag': 'ALQ_230382ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-00361.RNA-Seq.R1_L002.A C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L002_R1_001.fastq.gz 3814374193 FASTQ R1_L002 unaligned CPTAC3 2bb0bf8f-ed23-4cc6-aaa6-f36f1d0811ab eccbf7dbf3be976626a875da5632c951 { 'aliquot_tag': 'ALQ_354a26b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00361.RNA-Seq.R1_L004.T C3L-00361 UCEC RNA-Seq tumor CPT0002430005 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4230350271 FASTQ R1_L004 unaligned CPTAC3 d1c64f6f-aa85-463a-8773-69513cad82a7 50e7dbeb7f8ca22ed5b486b70bbebada { 'aliquot_tag': 'ALQ_230382ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-00361.RNA-Seq.R1_.T C3L-00361 UCEC RNA-Seq tumor CPT0349610001 20210723_P2_B7_WB7988-plate2_S19_R1_001.fastq.gz 4966495044 FASTQ R1_ unaligned CPTAC3 cf665016-f9e0-4318-a158-97e8aeab1ff0 b8e4e9893d5ed174534bb70d6500ba6c { 'aliquot_tag': 'ALQ_aca6d21a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00361.RNA-Seq.R2_L002.A C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L002_R2_001.fastq.gz 4351412567 FASTQ R2_L002 unaligned CPTAC3 6c30343e-37cb-40c2-898e-44c3125b5afd 1a1afe17633f93fb71d116972cf3db60 { 'aliquot_tag': 'ALQ_354a26b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00361.RNA-Seq.R2_L004.T C3L-00361 UCEC RNA-Seq tumor CPT0002430005 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4666475221 FASTQ R2_L004 unaligned CPTAC3 c0cbd504-5d93-4f9d-bb5a-1cbe602f2a3d d0372523440b4b20434bab5697e1ada2 { 'aliquot_tag': 'ALQ_230382ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-00361.RNA-Seq.R2_.T C3L-00361 UCEC RNA-Seq tumor CPT0349610001 20210723_P2_B7_WB7988-plate2_S19_R2_001.fastq.gz 5103386752 FASTQ R2_ unaligned CPTAC3 f70c4768-08e0-419f-a833-30374e1d6383 63c1034f1c028645d11ce50b8a5ba760 { 'aliquot_tag': 'ALQ_aca6d21a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00361.RNA-Seq.chimeric.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0349610001 bda3031d-69cd-4f60-886b-ddd4d9c7a46c.rna_seq.chimeric.gdc_realn.bam 150511531 BAM chimeric harmonized CPTAC3 c8b7bac9-d98b-473b-b300-69a3812cff50 01fca99505c2147d20d6565066cfccb3 { 'aliquot_tag': 'ALQ_aca6d21a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00361.RNA-Seq.genomic.A.hg38 C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 fbc0e240-4531-4aee-bd35-b2aa4bcc926b.rna_seq.genomic.gdc_realn.bam 8318240035 BAM genomic harmonized CPTAC3 78585552-9475-4781-b81a-95c1af3ba105 2b85d4ee144f79a9cbebb8b34d5ef825 { 'aliquot_tag': 'ALQ_354a26b7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00361.RNA-Seq.genomic.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0002430005 85990901-db98-4a0f-8942-0285ee687462.rna_seq.genomic.gdc_realn.bam 8835704503 BAM genomic harmonized CPTAC3 19bff5fc-d2dd-405e-9c30-731608412cda 17cd2af7d782459757c71503c5ddf879 { 'aliquot_tag': 'ALQ_230382ad', 'gdc_sample_type': 'Primary Tumor' } +C3L-00361.RNA-Seq.genomic.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0349610001 bda3031d-69cd-4f60-886b-ddd4d9c7a46c.rna_seq.genomic.gdc_realn.bam 7958982536 BAM genomic harmonized CPTAC3 5918f830-d949-411b-b0b4-419963827a45 45c69980e829863bede655610a69c9af { 'aliquot_tag': 'ALQ_aca6d21a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00361.RNA-Seq.R1_L002.A C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L002_R1_001.fastq.gz 3814374193 FASTQ R1_L002 unaligned CPTAC3 2bb0bf8f-ed23-4cc6-aaa6-f36f1d0811ab eccbf7dbf3be976626a875da5632c951 { 'aliquot_tag': 'ALQ_354a26b7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-00361.RNA-Seq.R1_L004.T C3L-00361 UCEC RNA-Seq tumor CPT0002430005 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4230350271 FASTQ R1_L004 unaligned CPTAC3 d1c64f6f-aa85-463a-8773-69513cad82a7 50e7dbeb7f8ca22ed5b486b70bbebada { 'aliquot_tag': 'ALQ_230382ad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00361.RNA-Seq.R2_L002.A C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L002_R2_001.fastq.gz 4351412567 FASTQ R2_L002 unaligned CPTAC3 6c30343e-37cb-40c2-898e-44c3125b5afd 1a1afe17633f93fb71d116972cf3db60 { 'aliquot_tag': 'ALQ_354a26b7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-00361.RNA-Seq.R2_L004.T C3L-00361 UCEC RNA-Seq tumor CPT0002430005 170802_UNC31-K00269_0072_AHK3GVBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4666475221 FASTQ R2_L004 unaligned CPTAC3 c0cbd504-5d93-4f9d-bb5a-1cbe602f2a3d d0372523440b4b20434bab5697e1ada2 { 'aliquot_tag': 'ALQ_230382ad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00361.RNA-Seq.T C3L-00361 UCEC RNA-Seq tumor CPT0349610001 20210723_P2_B7_WB7988-plate2_S19_R1_001.fastq.gz 4966495044 FASTQ unaligned CPTAC3 cf665016-f9e0-4318-a158-97e8aeab1ff0 b8e4e9893d5ed174534bb70d6500ba6c +C3L-00361.RNA-Seq.T C3L-00361 UCEC RNA-Seq tumor CPT0349610001 20210723_P2_B7_WB7988-plate2_S19_R2_001.fastq.gz 5103386752 FASTQ unaligned CPTAC3 f70c4768-08e0-419f-a833-30374e1d6383 63c1034f1c028645d11ce50b8a5ba760 C3L-00361.RNA-Seq.transcriptome.A.hg38 C3L-00361 UCEC RNA-Seq tissue_normal CPT0002450006 fbc0e240-4531-4aee-bd35-b2aa4bcc926b.rna_seq.transcriptome.gdc_realn.bam 10337354686 BAM transcriptome harmonized CPTAC3 48050869-89a2-4715-bdda-78eb8e4d564f 5f62bc3fce229ff416e1c74bcc543429 { 'aliquot_tag': 'ALQ_354a26b7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00361.RNA-Seq.transcriptome.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0002430005 85990901-db98-4a0f-8942-0285ee687462.rna_seq.transcriptome.gdc_realn.bam 9857137428 BAM transcriptome harmonized CPTAC3 fcfa21a6-2bac-4e5e-9522-b1036c472920 3330c854c76d966b3b0cc949d51020df { 'aliquot_tag': 'ALQ_230382ad', 'gdc_sample_type': 'Primary Tumor' } +C3L-00361.RNA-Seq.transcriptome.T.hg38 C3L-00361 UCEC RNA-Seq tumor CPT0349610001 bda3031d-69cd-4f60-886b-ddd4d9c7a46c.rna_seq.transcriptome.gdc_realn.bam 4028673360 BAM transcriptome harmonized CPTAC3 7cc8c798-d143-4c5f-a020-9b0b53db2187 7752dd842c2e9352057f51370939de48 { 'aliquot_tag': 'ALQ_aca6d21a', 'gdc_sample_type': 'Primary Tumor' } C3L-00361.WGS.A C3L-00361 UCEC WGS tissue_normal CPT0002450009 CPT0002450009.WholeGenome.RP-1303.bam 62097807058 BAM aligned CPTAC3 b8f00e54-fe4d-4eaf-bef3-26929ab348b3 44139d09951ae5d8d32fe7cd0df21786 { 'aliquot_tag': 'ALQ_a5f53b26', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00361.WGS.A.hg38 C3L-00361 UCEC WGS tissue_normal CPT0002450009 c2d3b52e-1e55-4d90-9dba-1b608de38b9b_wgs_gdc_realn.bam 92790473045 BAM harmonized CPTAC3 627dd9e0-a5a8-4744-a3e8-fcc6958021d7 d624f13a6979f94032c9259008b422b3 { 'aliquot_tag': 'ALQ_a5f53b26', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00361.WGS.N C3L-00361 UCEC WGS blood_normal CPT0004400002 CPT0004400002.WholeGenome.RP-1303.bam 62927689569 BAM aligned CPTAC3 32e51e53-9a3f-4f71-8517-2313f006ffc8 9991c982dcea99a3089c9c445a16db99 { 'aliquot_tag': 'ALQ_991758e4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -1896,12 +2329,15 @@ C3L-00362.MethArray.Red.T C3L-00362 UCEC Methylation Array tumor CPT0002500008 2 C3L-00362.miRNA-Seq.T C3L-00362 UCEC miRNA-Seq tumor CPT0002500005 181012_UNC32-K00270_0124_AH223CBBXY_GTGGCC_S40_L002_R1_001.unaln.bam 174299045 BAM unaligned CPTAC3 ef5fddd1-3051-4ff8-94d0-2e6eca045fba c503beebe8980ab9fd3049e4ea66eb41 { 'aliquot_tag': 'ALQ_afff2bd8', 'gdc_sample_type': 'Primary Tumor' } C3L-00362.miRNA-Seq.T.hg38 C3L-00362 UCEC miRNA-Seq tumor CPT0002500005 95c249fb-5a5b-4d79-93a6-f06938b7d0c0_mirnaseq_gdc_realn.bam 187844656 BAM harmonized CPTAC3 44575c0d-66ab-47d3-bbde-63dcfebea759 c73fddc48729fdf140283ad480853b42 { 'aliquot_tag': 'ALQ_afff2bd8', 'gdc_sample_type': 'Primary Tumor' } C3L-00362.RNA-Seq.chimeric.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0002500005 4ba838f4-c8ce-4511-b740-0f4f91ec9cf5.rna_seq.chimeric.gdc_realn.bam 115514849 BAM chimeric harmonized CPTAC3 aa95fa92-06a2-4ac9-b3bf-82bf17e0aa3a 265b9330d3b33d661d095ef0538c1639 { 'aliquot_tag': 'ALQ_afff2bd8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00362.RNA-Seq.genomic.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0002500005 4ba838f4-c8ce-4511-b740-0f4f91ec9cf5.rna_seq.genomic.gdc_realn.bam 7441586660 BAM genomic harmonized CPTAC3 cdae0bba-847b-4b81-a8ca-b5c5284d70eb 565a3f70b242de7a00bb6e4556d5c110 { 'aliquot_tag': 'ALQ_afff2bd8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00362.RNA-Seq.R1_L004.T C3L-00362 UCEC RNA-Seq tumor CPT0002500005 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L004_R1_001.fastq.gz 3723944064 FASTQ R1_L004 unaligned CPTAC3 638dd879-a5ee-437c-9f30-c97dcfa19a09 713eaba1f82c2f8be83e77110ac94e69 { 'aliquot_tag': 'ALQ_afff2bd8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00362.RNA-Seq.R1_.T C3L-00362 UCEC RNA-Seq tumor CPT0349640001 20210714_P1_F2_WB7988_plate1_S62_R1_001.fastq.gz 6810927312 FASTQ R1_ unaligned CPTAC3 437dd343-d1c5-4221-93d4-a6267458b716 b2189a4f48b2ca509fde512d0981eb21 { 'aliquot_tag': 'ALQ_64465d6a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00362.RNA-Seq.R2_L004.T C3L-00362 UCEC RNA-Seq tumor CPT0002500005 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L004_R2_001.fastq.gz 4179158272 FASTQ R2_L004 unaligned CPTAC3 a02f460b-1cbd-4c92-a5ef-9928088c8c1e 5c299c57ea2cf59ecc87209391d5608c { 'aliquot_tag': 'ALQ_afff2bd8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00362.RNA-Seq.R2_.T C3L-00362 UCEC RNA-Seq tumor CPT0349640001 20210714_P1_F2_WB7988_plate1_S62_R2_001.fastq.gz 7074047662 FASTQ R2_ unaligned CPTAC3 87ec48f8-0fb1-47c9-a167-e4559e4b3203 1f7544aa1343eb90d5be7490f108a8ad { 'aliquot_tag': 'ALQ_64465d6a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00362.RNA-Seq.chimeric.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0349640001 00871caf-3f63-499e-a152-5a6b19834bf7.rna_seq.chimeric.gdc_realn.bam 184232820 BAM chimeric harmonized CPTAC3 4cbccd6c-4072-4f0d-8ea5-a4363c6bab6f 71ab8e3d033744da522c6573f1fa2a44 { 'aliquot_tag': 'ALQ_64465d6a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00362.RNA-Seq.genomic.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0002500005 4ba838f4-c8ce-4511-b740-0f4f91ec9cf5.rna_seq.genomic.gdc_realn.bam 7441586660 BAM genomic harmonized CPTAC3 c9b3ea0a-21c2-415b-b0c6-4e2776c22184 565a3f70b242de7a00bb6e4556d5c110 { 'aliquot_tag': 'ALQ_afff2bd8', 'gdc_sample_type': 'Primary Tumor' } +C3L-00362.RNA-Seq.genomic.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0349640001 00871caf-3f63-499e-a152-5a6b19834bf7.rna_seq.genomic.gdc_realn.bam 10452182682 BAM genomic harmonized CPTAC3 3b1fed78-3e04-4a94-9510-0e223fece498 34aa58ce199855ce29e24a9ed9706e62 { 'aliquot_tag': 'ALQ_64465d6a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00362.RNA-Seq.R1_L004.T C3L-00362 UCEC RNA-Seq tumor CPT0002500005 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L004_R1_001.fastq.gz 3723944064 FASTQ R1_L004 unaligned CPTAC3 638dd879-a5ee-437c-9f30-c97dcfa19a09 713eaba1f82c2f8be83e77110ac94e69 { 'aliquot_tag': 'ALQ_afff2bd8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00362.RNA-Seq.R2_L004.T C3L-00362 UCEC RNA-Seq tumor CPT0002500005 170802_UNC31-K00269_0072_AHK3GVBBXX_ATTCCT_S6_L004_R2_001.fastq.gz 4179158272 FASTQ R2_L004 unaligned CPTAC3 a02f460b-1cbd-4c92-a5ef-9928088c8c1e 5c299c57ea2cf59ecc87209391d5608c { 'aliquot_tag': 'ALQ_afff2bd8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00362.RNA-Seq.T C3L-00362 UCEC RNA-Seq tumor CPT0349640001 20210714_P1_F2_WB7988_plate1_S62_R1_001.fastq.gz 6810927312 FASTQ unaligned CPTAC3 437dd343-d1c5-4221-93d4-a6267458b716 b2189a4f48b2ca509fde512d0981eb21 +C3L-00362.RNA-Seq.T C3L-00362 UCEC RNA-Seq tumor CPT0349640001 20210714_P1_F2_WB7988_plate1_S62_R2_001.fastq.gz 7074047662 FASTQ unaligned CPTAC3 87ec48f8-0fb1-47c9-a167-e4559e4b3203 1f7544aa1343eb90d5be7490f108a8ad C3L-00362.RNA-Seq.transcriptome.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0002500005 4ba838f4-c8ce-4511-b740-0f4f91ec9cf5.rna_seq.transcriptome.gdc_realn.bam 8468250505 BAM transcriptome harmonized CPTAC3 5e7cef2b-4931-4255-a748-4e3f4c9e9c82 868059ae6c8ad98de4af392481e5dc03 { 'aliquot_tag': 'ALQ_afff2bd8', 'gdc_sample_type': 'Primary Tumor' } +C3L-00362.RNA-Seq.transcriptome.T.hg38 C3L-00362 UCEC RNA-Seq tumor CPT0349640001 00871caf-3f63-499e-a152-5a6b19834bf7.rna_seq.transcriptome.gdc_realn.bam 5939483357 BAM transcriptome harmonized CPTAC3 6456abc0-9881-44fe-9112-497d2e1e5e7f 86a117791657af9c1ba91627af1d561a { 'aliquot_tag': 'ALQ_64465d6a', 'gdc_sample_type': 'Primary Tumor' } C3L-00362.WGS.N C3L-00362 UCEC WGS blood_normal CPT0002850002 CPT0002850002.WholeGenome.RP-1303.bam 63124633407 BAM aligned CPTAC3 0e98f024-52ac-4b53-9d4d-24d10982e0cc 4f66b04676a626c00576bdc3489db389 { 'aliquot_tag': 'ALQ_45e522d5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00362.WGS.N.hg38 C3L-00362 UCEC WGS blood_normal CPT0002850002 fabf7d4a-34b3-4c27-8921-035cace2795b_gdc_realn.bam 91996324718 BAM harmonized CPTAC3 40d09165-a271-453d-9bd0-1f6056b7b83d 6055763a132ca42fe3b194bdd3729e9e { 'aliquot_tag': 'ALQ_45e522d5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00362.WGS.T C3L-00362 UCEC WGS tumor CPT0002500008 CPT0002500008.WholeGenome.RP-1303.bam 71327810996 BAM aligned CPTAC3 1d04a0bc-d3f9-4b46-9328-7d8ca2e18176 f338de6c989d1cafd4fa0c7207a8dae3 { 'aliquot_tag': 'ALQ_d14e5765', 'gdc_sample_type': 'Primary Tumor' } @@ -1915,9 +2351,9 @@ C3L-00365.MethArray.Red.T C3L-00365 GBM Methylation Array tumor CPT0002410008 20 C3L-00365.miRNA-Seq.T C3L-00365 GBM miRNA-Seq tumor CPT0002410013 181012_UNC32-K00270_0124_AH223CBBXY_CAAAAG_S2_L003_R1_001.unaln.bam 323705739 BAM unaligned CPTAC3 a2b8dfda-39b4-442f-830a-424f7b5deac9 ce1ffd3167006d515cb3850f5d980f4a { 'aliquot_tag': 'ALQ_a9bb45b9', 'gdc_sample_type': 'Primary Tumor' } C3L-00365.miRNA-Seq.T.hg38 C3L-00365 GBM miRNA-Seq tumor CPT0002410013 12930ba9-7a07-49a0-b399-419c7f2e972f_mirnaseq_gdc_realn.bam 364603447 BAM harmonized CPTAC3 9fc84e89-b538-4439-ba11-e9e81d9f78dc 6e822ae662e19f6a01e951a88266922d { 'aliquot_tag': 'ALQ_a9bb45b9', 'gdc_sample_type': 'Primary Tumor' } C3L-00365.RNA-Seq.chimeric.T.hg38 C3L-00365 GBM RNA-Seq tumor CPT0002410013 b7effa07-1b05-412a-a1ef-54d52d795c90.rna_seq.chimeric.gdc_realn.bam 134764796 BAM chimeric harmonized CPTAC3 f5d7855a-dc89-4580-913f-8b081ba5619f aa61fa388d39a9b0ff84d4efaac5ba33 { 'aliquot_tag': 'ALQ_a9bb45b9', 'gdc_sample_type': 'Primary Tumor' } -C3L-00365.RNA-Seq.genomic.T.hg38 C3L-00365 GBM RNA-Seq tumor CPT0002410013 b7effa07-1b05-412a-a1ef-54d52d795c90.rna_seq.genomic.gdc_realn.bam 9238517517 BAM genomic harmonized CPTAC3 64db7bcf-4465-4aac-9998-e02a6f4422a2 ec1529ec7003043a828289da95b6faf3 { 'aliquot_tag': 'ALQ_a9bb45b9', 'gdc_sample_type': 'Primary Tumor' } -C3L-00365.RNA-Seq.R1_L006.T C3L-00365 GBM RNA-Seq tumor CPT0002410013 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R1_001.fastq.gz 4305229627 FASTQ R1_L006 unaligned CPTAC3 c44ed7f2-1622-46de-804c-9611500c3fc0 058c5ec317bc0f07be1ed923b76bab1f { 'aliquot_tag': 'ALQ_a9bb45b9', 'gdc_sample_type': 'Primary Tumor' } -C3L-00365.RNA-Seq.R2_L006.T C3L-00365 GBM RNA-Seq tumor CPT0002410013 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R2_001.fastq.gz 4633365552 FASTQ R2_L006 unaligned CPTAC3 1d5f90ed-8c7c-4482-a0fc-79d8520ef8ce e856937adfb077b937ca1e202a6dddd8 { 'aliquot_tag': 'ALQ_a9bb45b9', 'gdc_sample_type': 'Primary Tumor' } +C3L-00365.RNA-Seq.genomic.T.hg38 C3L-00365 GBM RNA-Seq tumor CPT0002410013 b7effa07-1b05-412a-a1ef-54d52d795c90.rna_seq.genomic.gdc_realn.bam 9238517517 BAM genomic harmonized CPTAC3 0630b56c-7dc4-453a-ac77-6b7871bf6fc0 ec1529ec7003043a828289da95b6faf3 { 'aliquot_tag': 'ALQ_a9bb45b9', 'gdc_sample_type': 'Primary Tumor' } +C3L-00365.RNA-Seq.R1_L006.T C3L-00365 GBM RNA-Seq tumor CPT0002410013 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R1_001.fastq.gz 4305229627 FASTQ R1_L006 unaligned CPTAC3 c44ed7f2-1622-46de-804c-9611500c3fc0 058c5ec317bc0f07be1ed923b76bab1f { 'aliquot_tag': 'ALQ_a9bb45b9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00365.RNA-Seq.R2_L006.T C3L-00365 GBM RNA-Seq tumor CPT0002410013 170818_UNC32-K00270_0050_AHL2FHBBXX_GATCAG_S9_L006_R2_001.fastq.gz 4633365552 FASTQ R2_L006 unaligned CPTAC3 1d5f90ed-8c7c-4482-a0fc-79d8520ef8ce e856937adfb077b937ca1e202a6dddd8 { 'aliquot_tag': 'ALQ_a9bb45b9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-00365.RNA-Seq.transcriptome.T.hg38 C3L-00365 GBM RNA-Seq tumor CPT0002410013 b7effa07-1b05-412a-a1ef-54d52d795c90.rna_seq.transcriptome.gdc_realn.bam 10531131546 BAM transcriptome harmonized CPTAC3 3f7a96f5-7cf3-4865-9d77-596dc181c697 19842b89cfa9da71effdc7e2fd947b02 { 'aliquot_tag': 'ALQ_a9bb45b9', 'gdc_sample_type': 'Primary Tumor' } C3L-00365.WGS.N C3L-00365 GBM WGS blood_normal CPT0004390002 CPT0004390002.WholeGenome.RP-1303.bam 84728590605 BAM aligned CPTAC3 68cf4fa0-f1a1-4a08-aeb8-793af612f3aa 08ff7689a75e149393259ff5bab7f816 { 'aliquot_tag': 'ALQ_89020a2d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00365.WGS.N.hg38 C3L-00365 GBM WGS blood_normal CPT0004390002 1ed64831-3495-49f5-a860-b775ad3586e9_gdc_realn.bam 125945749891 BAM harmonized CPTAC3 4d6b2cf2-0e59-4d7e-8189-7ce030358a1e eb54f7be7de7ec32c383815dc26e68f0 { 'aliquot_tag': 'ALQ_89020a2d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -1939,10 +2375,10 @@ C3L-00368.RNA-Seq.chimeric.A.hg38 C3L-00368 LUAD RNA-Seq tissue_normal CPT006375 C3L-00368.RNA-Seq.chimeric.T.hg38 C3L-00368 LUAD RNA-Seq tumor CPT0063730009 2a20ed91-2a8e-42a6-8909-62d21d48f06e.rna_seq.chimeric.gdc_realn.bam 29752863 BAM chimeric harmonized CPTAC3 81247107-fe31-41c3-a037-f1fa313a01ad be16f674cfc670810fc09a3f59415937 { 'aliquot_tag': 'ALQ_cc39be1b', 'gdc_sample_type': 'Primary Tumor' } C3L-00368.RNA-Seq.genomic.A.hg38 C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 ac158cec-32cb-45a0-911d-7dec3811fd74.rna_seq.genomic.gdc_realn.bam 5491966389 BAM genomic harmonized CPTAC3 d938d19c-4d5c-4387-9400-591569fcec9a 861911a8fdcd2006a3c352b1207a8417 { 'aliquot_tag': 'ALQ_d3c6562a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00368.RNA-Seq.genomic.T.hg38 C3L-00368 LUAD RNA-Seq tumor CPT0063730009 2a20ed91-2a8e-42a6-8909-62d21d48f06e.rna_seq.genomic.gdc_realn.bam 8878353190 BAM genomic harmonized CPTAC3 9f2aed97-36c5-4c3e-a87c-da4908409163 c94521b636766655f9657ceb1392516a { 'aliquot_tag': 'ALQ_cc39be1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00368.RNA-Seq.R1_L007.A C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R1_001.fastq.gz 2812587486 FASTQ R1_L007 unaligned CPTAC3 bc417a64-b28b-4b98-bceb-72290423edab 426ca13ff6c5d52900ecd4b1b2e34f45 { 'aliquot_tag': 'ALQ_d3c6562a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00368.RNA-Seq.R1_L008.T C3L-00368 LUAD RNA-Seq tumor CPT0063730009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R1_001.fastq.gz 4191973381 FASTQ R1_L008 unaligned CPTAC3 bb8ea747-c1e3-4688-951e-2003f19d54ed ff0ba3fa3ac7e8f7d4d74043988036a3 { 'aliquot_tag': 'ALQ_cc39be1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00368.RNA-Seq.R2_L007.A C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R2_001.fastq.gz 2954299519 FASTQ R2_L007 unaligned CPTAC3 d2677613-eac0-454b-bae2-d617f4d4499d b5570f80060e787e5bd976119c3dc60c { 'aliquot_tag': 'ALQ_d3c6562a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00368.RNA-Seq.R2_L008.T C3L-00368 LUAD RNA-Seq tumor CPT0063730009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R2_001.fastq.gz 4616759031 FASTQ R2_L008 unaligned CPTAC3 92f50d80-ee03-419b-bb18-47cb4c997113 de1192c95f1df4f098bfc5091a941e87 { 'aliquot_tag': 'ALQ_cc39be1b', 'gdc_sample_type': 'Primary Tumor' } +C3L-00368.RNA-Seq.R1_L007.A C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R1_001.fastq.gz 2812587486 FASTQ R1_L007 unaligned CPTAC3 bc417a64-b28b-4b98-bceb-72290423edab 426ca13ff6c5d52900ecd4b1b2e34f45 { 'aliquot_tag': 'ALQ_d3c6562a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00368.RNA-Seq.R1_L008.T C3L-00368 LUAD RNA-Seq tumor CPT0063730009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R1_001.fastq.gz 4191973381 FASTQ R1_L008 unaligned CPTAC3 bb8ea747-c1e3-4688-951e-2003f19d54ed ff0ba3fa3ac7e8f7d4d74043988036a3 { 'aliquot_tag': 'ALQ_cc39be1b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00368.RNA-Seq.R2_L007.A C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L007_R2_001.fastq.gz 2954299519 FASTQ R2_L007 unaligned CPTAC3 d2677613-eac0-454b-bae2-d617f4d4499d b5570f80060e787e5bd976119c3dc60c { 'aliquot_tag': 'ALQ_d3c6562a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-00368.RNA-Seq.R2_L008.T C3L-00368 LUAD RNA-Seq tumor CPT0063730009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R2_001.fastq.gz 4616759031 FASTQ R2_L008 unaligned CPTAC3 92f50d80-ee03-419b-bb18-47cb4c997113 de1192c95f1df4f098bfc5091a941e87 { 'aliquot_tag': 'ALQ_cc39be1b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-00368.RNA-Seq.transcriptome.A.hg38 C3L-00368 LUAD RNA-Seq tissue_normal CPT0063750006 ac158cec-32cb-45a0-911d-7dec3811fd74.rna_seq.transcriptome.gdc_realn.bam 6886798926 BAM transcriptome harmonized CPTAC3 d7ba9fa7-edf4-4765-ab93-04cb16d38a92 74fe8cb98630e929e78494df1a1777db { 'aliquot_tag': 'ALQ_d3c6562a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00368.RNA-Seq.transcriptome.T.hg38 C3L-00368 LUAD RNA-Seq tumor CPT0063730009 2a20ed91-2a8e-42a6-8909-62d21d48f06e.rna_seq.transcriptome.gdc_realn.bam 11669083365 BAM transcriptome harmonized CPTAC3 c38af7d9-f51e-4248-81d7-b54e1d6c73e9 ab865476fa3d567bbcd9f13164c0675f { 'aliquot_tag': 'ALQ_cc39be1b', 'gdc_sample_type': 'Primary Tumor' } C3L-00368.WGS.A C3L-00368 LUAD WGS tissue_normal CPT0063750009 CPT0063750009.WholeGenome.RP-1303.bam 58946484941 BAM aligned CPTAC3 33927298-2a7f-48cb-a9e9-221a3ae7a983 45ba3cb2c5a9a6513791ba739cc37920 { 'aliquot_tag': 'ALQ_43794bbb', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -1966,16 +2402,16 @@ C3L-00369.DUP_28c61080.WXS.T.hg38 C3L-00369 CCRCC WXS tumor CPT0006520009 5b2ddf C3L-00369.DUP_5c7d7cc3.miRNA-Seq.T C3L-00369 CCRCC miRNA-Seq tumor CPT0006470008 200526_UNC32-K00270_0248_BHH7WFBBXY_GAGTGG_S30_L002_R1_001.unaln.bam 362120248 BAM unaligned CPTAC3 cb5085da-d0c5-479f-9a08-7ce9b20811de 067afb3ad069178de41242ef2b293982 { 'aliquot_tag': 'DUP_5c7d7cc3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00369.DUP_5c7d7cc3.miRNA-Seq.T.hg38 C3L-00369 CCRCC miRNA-Seq tumor CPT0006470008 6006cd1b-a544-401d-9e26-53e8883cfd57_mirnaseq_gdc_realn.bam 407563343 BAM harmonized CPTAC3 3f146d2a-25b7-4096-bf90-b4b83a7a6616 8519fab28046a2e977eec769948bd36b { 'aliquot_tag': 'DUP_5c7d7cc3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00369.DUP_5c7d7cc3.RNA-Seq.chimeric.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 aba46246-1ae9-4f36-9dc3-eaebad5df426.rna_seq.chimeric.gdc_realn.bam 82082378 BAM chimeric harmonized CPTAC3 4a0c09ed-4921-44f2-82fc-df17cac0a312 548ba24d457dd7281510a5cec7d022f9 { 'aliquot_tag': 'DUP_5c7d7cc3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00369.DUP_5c7d7cc3.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 aba46246-1ae9-4f36-9dc3-eaebad5df426.rna_seq.genomic.gdc_realn.bam 8759173161 BAM genomic harmonized CPTAC3 e57e00db-c4ed-4159-a217-bf19cab03e34 5b7915a106578c35ca6c75da71414dbb { 'aliquot_tag': 'DUP_5c7d7cc3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00369.DUP_5c7d7cc3.RNA-Seq.R1_L005.T C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R1_001.fastq.gz 4333385636 FASTQ R1_L005 unaligned CPTAC3 0d8beac8-1680-43c5-aa5d-5420c89ba6ac 63228665471662aabac114c10e187bb9 { 'aliquot_tag': 'DUP_5c7d7cc3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00369.DUP_5c7d7cc3.RNA-Seq.R2_L005.T C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R2_001.fastq.gz 4951122606 FASTQ R2_L005 unaligned CPTAC3 ca658797-2345-433f-8617-c14524027bba 14ed1ae3c587f6f678e0df6b1756e597 { 'aliquot_tag': 'DUP_5c7d7cc3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00369.DUP_5c7d7cc3.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 aba46246-1ae9-4f36-9dc3-eaebad5df426.rna_seq.genomic.gdc_realn.bam 8759173161 BAM genomic harmonized CPTAC3 58bbb2e0-ebe8-4cf4-9c1e-f27e6c79777a 5b7915a106578c35ca6c75da71414dbb { 'aliquot_tag': 'DUP_5c7d7cc3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00369.DUP_5c7d7cc3.RNA-Seq.R1_L005.T C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R1_001.fastq.gz 4333385636 FASTQ R1_L005 unaligned CPTAC3 0d8beac8-1680-43c5-aa5d-5420c89ba6ac 63228665471662aabac114c10e187bb9 { 'aliquot_tag': 'DUP_5c7d7cc3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3L-00369.DUP_5c7d7cc3.RNA-Seq.R2_L005.T C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R2_001.fastq.gz 4951122606 FASTQ R2_L005 unaligned CPTAC3 ca658797-2345-433f-8617-c14524027bba 14ed1ae3c587f6f678e0df6b1756e597 { 'aliquot_tag': 'DUP_5c7d7cc3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3L-00369.DUP_5c7d7cc3.RNA-Seq.transcriptome.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006470008 aba46246-1ae9-4f36-9dc3-eaebad5df426.rna_seq.transcriptome.gdc_realn.bam 11372129895 BAM transcriptome harmonized CPTAC3 006d661e-098c-4fa6-93c0-3cfb012a570c b48a6d002df7d2416e6a3da117364976 { 'aliquot_tag': 'DUP_5c7d7cc3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00369.DUP_b8790d11.miRNA-Seq.T C3L-00369 CCRCC miRNA-Seq tumor CPT0006520006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L002_R1_001.unaln.bam 315804563 BAM unaligned CPTAC3 7cc1d94f-2d93-4563-bf32-6b36af1fa5dc b9bd45a0c03d682de9193636c4683152 { 'aliquot_tag': 'DUP_b8790d11', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00369.DUP_b8790d11.miRNA-Seq.T.hg38 C3L-00369 CCRCC miRNA-Seq tumor CPT0006520006 525f293d-47c9-4af3-b005-4da102c6d2dc_mirnaseq_gdc_realn.bam 354053785 BAM harmonized CPTAC3 b2398259-0678-4d41-a029-b7bb3bfa56f2 5fc2628ac0f318c04a7959121639aaa0 { 'aliquot_tag': 'DUP_b8790d11', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00369.DUP_b8790d11.RNA-Seq.chimeric.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 95e491d8-9453-4108-8a6a-2eef15257b98.rna_seq.chimeric.gdc_realn.bam 73296706 BAM chimeric harmonized CPTAC3 406b33b7-b759-4693-bc13-c2a6d593d9c9 6b4000583afb12ee6978a3d5d7ff871c { 'aliquot_tag': 'DUP_b8790d11', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00369.DUP_b8790d11.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 95e491d8-9453-4108-8a6a-2eef15257b98.rna_seq.genomic.gdc_realn.bam 9478777306 BAM genomic harmonized CPTAC3 eb2eeff1-7c1d-4cb6-a568-f8db07cc90a4 8d0ae70245f33fc80498986e4458432b { 'aliquot_tag': 'DUP_b8790d11', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00369.DUP_b8790d11.RNA-Seq.R1_L006.T C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R1_001.fastq.gz 4559357071 FASTQ R1_L006 unaligned CPTAC3 0d4df7a3-0bc0-433a-b512-9693dcca677d e9471aa89498944c7ad52662062a54fb { 'aliquot_tag': 'DUP_b8790d11', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00369.DUP_b8790d11.RNA-Seq.R2_L006.T C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R2_001.fastq.gz 5300994968 FASTQ R2_L006 unaligned CPTAC3 27a5d8ca-2413-4978-ac91-a446d558c6a5 2e154f68371eba5f05feca9bf23d21e0 { 'aliquot_tag': 'DUP_b8790d11', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00369.DUP_b8790d11.RNA-Seq.R1_L006.T C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R1_001.fastq.gz 4559357071 FASTQ R1_L006 unaligned CPTAC3 0d4df7a3-0bc0-433a-b512-9693dcca677d e9471aa89498944c7ad52662062a54fb { 'aliquot_tag': 'DUP_b8790d11', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3L-00369.DUP_b8790d11.RNA-Seq.R2_L006.T C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R2_001.fastq.gz 5300994968 FASTQ R2_L006 unaligned CPTAC3 27a5d8ca-2413-4978-ac91-a446d558c6a5 2e154f68371eba5f05feca9bf23d21e0 { 'aliquot_tag': 'DUP_b8790d11', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3L-00369.DUP_b8790d11.RNA-Seq.transcriptome.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006520006 95e491d8-9453-4108-8a6a-2eef15257b98.rna_seq.transcriptome.gdc_realn.bam 14282881347 BAM transcriptome harmonized CPTAC3 d1cba7e0-cf47-4a55-a78b-0c556bdb6ea0 1d81d6f276ea7265a8a0b19be8b60a26 { 'aliquot_tag': 'DUP_b8790d11', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00369.DUP_bbc551c4.MethArray.Green.T C3L-00369 CCRCC Methylation Array tumor CPT0006470006 204372030161_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 27e06e8e-4c71-4681-a329-88e8305d4c94 a90e8c1535b85e232ee2ac5cb8c1aa2e { 'aliquot_tag': 'DUP_bbc551c4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00369.DUP_bbc551c4.MethArray.Red.T C3L-00369 CCRCC Methylation Array tumor CPT0006470006 204372030161_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 2e740af2-85d3-4aa1-9c41-64c3b4b8a057 0e2e40ce76968db8bc38ac7424d4141c { 'aliquot_tag': 'DUP_bbc551c4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -1994,11 +2430,11 @@ C3L-00369.miRNA-Seq.T.hg38 C3L-00369 CCRCC miRNA-Seq tumor CPT0006440006 61568aa C3L-00369.RNA-Seq.chimeric.A.hg38 C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 ed6e7cf6-058e-4717-b17a-75d712981db5.rna_seq.chimeric.gdc_realn.bam 87208501 BAM chimeric harmonized CPTAC3 64a01db0-a325-4562-aa0d-613aff5af7d5 279797b1d93185e40c7080223b52903e { 'aliquot_tag': 'ALQ_851924a1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00369.RNA-Seq.chimeric.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 39719133-93be-4d44-b151-42942a4a29d0.rna_seq.chimeric.gdc_realn.bam 83007770 BAM chimeric harmonized CPTAC3 5773d4e1-9a55-40b1-9a9f-71092e73cd7a 3d1c3028e3b84009f62d665718929bad { 'aliquot_tag': 'ALQ_fc652b14', 'gdc_sample_type': 'Primary Tumor' } C3L-00369.RNA-Seq.genomic.A.hg38 C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 ed6e7cf6-058e-4717-b17a-75d712981db5.rna_seq.genomic.gdc_realn.bam 9141677465 BAM genomic harmonized CPTAC3 bead6e04-d70c-4590-b80c-57c3fc123704 88f15e7dd76a65759ce4b27ce5e39708 { 'aliquot_tag': 'ALQ_851924a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00369.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 39719133-93be-4d44-b151-42942a4a29d0.rna_seq.genomic.gdc_realn.bam 8930209326 BAM genomic harmonized CPTAC3 f667cf60-b57a-4be4-a068-cec25ebf7422 9fd3f2f19063a95e7e1a1ea3fce0564f { 'aliquot_tag': 'ALQ_fc652b14', 'gdc_sample_type': 'Primary Tumor' } -C3L-00369.RNA-Seq.R1_L004.T C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R1_001.fastq.gz 4385949568 FASTQ R1_L004 unaligned CPTAC3 ee01ad02-6971-4ec8-acd6-dd2c4b58b90e a107b01c30a2d6d45bda17df1faa5264 { 'aliquot_tag': 'ALQ_fc652b14', 'gdc_sample_type': 'Primary Tumor' } -C3L-00369.RNA-Seq.R1_L005.A C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 171208_UNC32-K00270_0071_BHN7K5BBXX_GGCTAC_S46_L005_R1_001.fastq.gz 4378813042 FASTQ R1_L005 unaligned CPTAC3 b4164ae8-fc6e-483a-962e-d069d7b7a6fa 8bbb53fd2b9445beff0b3e611daeda0d { 'aliquot_tag': 'ALQ_851924a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00369.RNA-Seq.R2_L004.T C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R2_001.fastq.gz 4589565712 FASTQ R2_L004 unaligned CPTAC3 21c6bcae-8c89-403c-942e-e017be8fcb22 b0c7fd309ab57f07800aa87151b1fd88 { 'aliquot_tag': 'ALQ_fc652b14', 'gdc_sample_type': 'Primary Tumor' } -C3L-00369.RNA-Seq.R2_L005.A C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 171208_UNC32-K00270_0071_BHN7K5BBXX_GGCTAC_S46_L005_R2_001.fastq.gz 4912455712 FASTQ R2_L005 unaligned CPTAC3 88a62ef5-b642-4fbf-a2b5-06b61fb3e50a 2d206a373543db81f057b3e0321c8820 { 'aliquot_tag': 'ALQ_851924a1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00369.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 39719133-93be-4d44-b151-42942a4a29d0.rna_seq.genomic.gdc_realn.bam 8930209326 BAM genomic harmonized CPTAC3 58e37c20-2e25-4d3d-a1e3-06b59707fa6d 9fd3f2f19063a95e7e1a1ea3fce0564f { 'aliquot_tag': 'ALQ_fc652b14', 'gdc_sample_type': 'Primary Tumor' } +C3L-00369.RNA-Seq.R1_L004.T C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R1_001.fastq.gz 4385949568 FASTQ R1_L004 unaligned CPTAC3 ee01ad02-6971-4ec8-acd6-dd2c4b58b90e a107b01c30a2d6d45bda17df1faa5264 { 'aliquot_tag': 'ALQ_fc652b14', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00369.RNA-Seq.R1_L005.A C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 171208_UNC32-K00270_0071_BHN7K5BBXX_GGCTAC_S46_L005_R1_001.fastq.gz 4378813042 FASTQ R1_L005 unaligned CPTAC3 b4164ae8-fc6e-483a-962e-d069d7b7a6fa 8bbb53fd2b9445beff0b3e611daeda0d { 'aliquot_tag': 'ALQ_851924a1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00369.RNA-Seq.R2_L004.T C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R2_001.fastq.gz 4589565712 FASTQ R2_L004 unaligned CPTAC3 21c6bcae-8c89-403c-942e-e017be8fcb22 b0c7fd309ab57f07800aa87151b1fd88 { 'aliquot_tag': 'ALQ_fc652b14', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00369.RNA-Seq.R2_L005.A C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 171208_UNC32-K00270_0071_BHN7K5BBXX_GGCTAC_S46_L005_R2_001.fastq.gz 4912455712 FASTQ R2_L005 unaligned CPTAC3 88a62ef5-b642-4fbf-a2b5-06b61fb3e50a 2d206a373543db81f057b3e0321c8820 { 'aliquot_tag': 'ALQ_851924a1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-00369.RNA-Seq.transcriptome.A.hg38 C3L-00369 CCRCC RNA-Seq tissue_normal CPT0006530006 ed6e7cf6-058e-4717-b17a-75d712981db5.rna_seq.transcriptome.gdc_realn.bam 11631459383 BAM transcriptome harmonized CPTAC3 d77cedfa-becc-4962-8ae1-a3602ce843f9 d16144e62332fed1ec781941d60f8054 { 'aliquot_tag': 'ALQ_851924a1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00369.RNA-Seq.transcriptome.T.hg38 C3L-00369 CCRCC RNA-Seq tumor CPT0006440006 39719133-93be-4d44-b151-42942a4a29d0.rna_seq.transcriptome.gdc_realn.bam 13529570135 BAM transcriptome harmonized CPTAC3 4eddd9e9-0f69-4baf-909a-3e55daf9faa0 ad1d7442e074910530972557f776dad6 { 'aliquot_tag': 'ALQ_fc652b14', 'gdc_sample_type': 'Primary Tumor' } C3L-00369.WGS.A C3L-00369 CCRCC WGS tissue_normal CPT0006530009 CPT0006530009.WholeGenome.RP-1303.bam 53812280342 BAM aligned CPTAC3 1897be88-4247-4f91-b7fc-d8d131a05162 f03f132600ff37aa1938eb4a413a2ad2 { 'aliquot_tag': 'ALQ_15a63930', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2019,16 +2455,16 @@ C3L-00395.miRNA-Seq.A C3L-00395 PDA miRNA-Seq tissue_normal CPT0019230006 181108 C3L-00395.miRNA-Seq.A.hg38 C3L-00395 PDA miRNA-Seq tissue_normal CPT0019230006 ba9dcc2f-fdb1-476c-858c-b4b7c2efc1a3_mirnaseq_gdc_realn.bam 169090918 BAM harmonized CPTAC3 572d478f-cfbf-499d-9a22-a6731d54706c 113279af98b38e768551de2f04eeff1d { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00395.miRNA-Seq.T C3L-00395 PDA miRNA-Seq tumor CPT0010020007 181012_UNC32-K00270_0124_AH223CBBXY_ATCACG_S22_L004_R1_001.unaln.bam 256935267 BAM unaligned CPTAC3 c1f2cfc7-c79b-4e50-8a90-73c80e85d1cd 3f79a4136d45f5ca4fbce513edaed736 { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor' } C3L-00395.miRNA-Seq.T.hg38 C3L-00395 PDA miRNA-Seq tumor CPT0010020007 94654452-5c3a-461c-b21d-5fd3a9507db5_mirnaseq_gdc_realn.bam 292282611 BAM harmonized CPTAC3 efe7344b-c458-4e01-895c-98dae9b97004 891b80041c738ce9d0eee1484704d8e3 { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor' } -C3L-00395.RNA-Seq.chimeric.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 3b4f8139-2d72-4ff7-910a-cfd233b67c6b.rna_seq.chimeric.gdc_realn.bam 143592142 BAM chimeric harmonized CPTAC3 6dada4f5-d636-421b-8880-46e79b96663a 6c4783f4ae1744d12e2ebdf08f0f9071 { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00395.RNA-Seq.chimeric.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 ad6bd250-1110-46cb-addb-a5066749fe24.rna_seq.chimeric.gdc_realn.bam 108727243 BAM chimeric harmonized CPTAC3 6b6185a3-c1ff-485a-a4b7-e92cc58adec8 b1d9c40ab613d652a726f61a7c035f95 { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor' } -C3L-00395.RNA-Seq.genomic.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 3b4f8139-2d72-4ff7-910a-cfd233b67c6b.rna_seq.genomic.gdc_realn.bam 9146584176 BAM genomic harmonized CPTAC3 68478b4b-f188-4bde-91b7-5f65df9f3551 420116901913266a0cd9c0b63d6636b6 { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00395.RNA-Seq.genomic.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 ad6bd250-1110-46cb-addb-a5066749fe24.rna_seq.genomic.gdc_realn.bam 9060089388 BAM genomic harmonized CPTAC3 4d4e9a22-c614-40da-b130-c230a07eb8eb b5200ed1a3868b854abe2f51764c1d16 { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor' } -C3L-00395.RNA-Seq.R1_L005.T C3L-00395 PDA RNA-Seq tumor CPT0010020007 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L005_R1_001.fastq.gz 4821204983 FASTQ R1_L005 unaligned CPTAC3 ad5886c9-bb87-453c-bf23-854d27a5db90 ce3cc1e66f548312042dd66eaa7f199c { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor' } -C3L-00395.RNA-Seq.R1_L007.A C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATTCCT_S58_L007_R1_001.fastq.gz 4051028052 FASTQ R1_L007 unaligned CPTAC3 60af23f1-4a28-4fbe-a9da-547a52f9ae40 65be6133f09f239c920dc47135fc8e09 { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00395.RNA-Seq.R2_L005.T C3L-00395 PDA RNA-Seq tumor CPT0010020007 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L005_R2_001.fastq.gz 5136961470 FASTQ R2_L005 unaligned CPTAC3 d43755e1-f5c2-4d7c-acd5-c860b264a4a2 231b46cc721c716dbd16ea9ab4320e3a { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor' } -C3L-00395.RNA-Seq.R2_L007.A C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATTCCT_S58_L007_R2_001.fastq.gz 4304355992 FASTQ R2_L007 unaligned CPTAC3 b61189fc-f6bf-4922-bbab-20cbc75ddcbe 95e86e73a1901ca19531d55eef87f457 { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00395.RNA-Seq.transcriptome.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 3b4f8139-2d72-4ff7-910a-cfd233b67c6b.rna_seq.transcriptome.gdc_realn.bam 10676898626 BAM transcriptome harmonized CPTAC3 18c22172-1d7d-4731-a3d3-625fccb7873c 77bb1179c325abcd7724908c7258c456 { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00395.RNA-Seq.transcriptome.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 ad6bd250-1110-46cb-addb-a5066749fe24.rna_seq.transcriptome.gdc_realn.bam 12110806649 BAM transcriptome harmonized CPTAC3 a04da21f-5e99-4629-a83d-2d6accfc9654 746432e8c83fdcfadd345d8a66b5cdd1 { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor' } +C3L-00395.RNA-Seq.chimeric.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 5c6c86d1-ccf6-4771-aadf-0dc539e7116c.rna_seq.chimeric.gdc_realn.bam 143632907 BAM chimeric harmonized CPTAC3 bf320102-13e5-4c03-9880-a80741169cf0 a54907a7cd7240bc1ca9e4e5e6aebcce { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00395.RNA-Seq.chimeric.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 d966e81b-b23e-47f8-b1b3-40ee70775096.rna_seq.chimeric.gdc_realn.bam 108697458 BAM chimeric harmonized CPTAC3 79286d24-2db3-4187-a49a-7d19180ae31b cb7e9fd5a53523df66b095cf45fb8f01 { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor' } +C3L-00395.RNA-Seq.genomic.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 5c6c86d1-ccf6-4771-aadf-0dc539e7116c.rna_seq.genomic.gdc_realn.bam 9148775730 BAM genomic harmonized CPTAC3 598c4675-b578-4a30-ac4d-2998eb2deee3 d34be33fb2518362aef3229cf59cc50a { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00395.RNA-Seq.genomic.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 d966e81b-b23e-47f8-b1b3-40ee70775096.rna_seq.genomic.gdc_realn.bam 9061163097 BAM genomic harmonized CPTAC3 a394c60a-d6d9-4b36-adf8-6d5691800b97 f5f414ea994813f6b4d741318aa20d1e { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor' } +C3L-00395.RNA-Seq.R1_L005.T C3L-00395 PDA RNA-Seq tumor CPT0010020007 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L005_R1_001.fastq.gz 4821204983 FASTQ R1_L005 unaligned CPTAC3 ad5886c9-bb87-453c-bf23-854d27a5db90 ce3cc1e66f548312042dd66eaa7f199c { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00395.RNA-Seq.R1_L007.A C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATTCCT_S58_L007_R1_001.fastq.gz 4051028052 FASTQ R1_L007 unaligned CPTAC3 60af23f1-4a28-4fbe-a9da-547a52f9ae40 65be6133f09f239c920dc47135fc8e09 { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00395.RNA-Seq.R2_L005.T C3L-00395 PDA RNA-Seq tumor CPT0010020007 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L005_R2_001.fastq.gz 5136961470 FASTQ R2_L005 unaligned CPTAC3 d43755e1-f5c2-4d7c-acd5-c860b264a4a2 231b46cc721c716dbd16ea9ab4320e3a { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-00395.RNA-Seq.R2_L007.A C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 180508_UNC31-K00269_0127_AHTV7YBBXX_ATTCCT_S58_L007_R2_001.fastq.gz 4304355992 FASTQ R2_L007 unaligned CPTAC3 b61189fc-f6bf-4922-bbab-20cbc75ddcbe 95e86e73a1901ca19531d55eef87f457 { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-00395.RNA-Seq.transcriptome.A.hg38 C3L-00395 PDA RNA-Seq tissue_normal CPT0019230006 5c6c86d1-ccf6-4771-aadf-0dc539e7116c.rna_seq.transcriptome.gdc_realn.bam 11989906168 BAM transcriptome harmonized CPTAC3 31f0a9de-98d4-418a-af13-807e9b3c0967 ebe3cd80a8046fdcf0758982e5978988 { 'aliquot_tag': 'ALQ_a2fe646e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00395.RNA-Seq.transcriptome.T.hg38 C3L-00395 PDA RNA-Seq tumor CPT0010020007 d966e81b-b23e-47f8-b1b3-40ee70775096.rna_seq.transcriptome.gdc_realn.bam 13680904031 BAM transcriptome harmonized CPTAC3 90f593d6-bc7f-43c2-9bba-628636509d21 6a603a92519462f4df0650753522a39b { 'aliquot_tag': 'ALQ_30c99990', 'gdc_sample_type': 'Primary Tumor' } C3L-00395.Targeted.T C3L-00395 PDA Targeted Sequencing tumor CPT0010020010_1 CPT0010020010_1.CustomSelection.RP-1303.PDO-18786.bam 5203736509 BAM aligned CPTAC3 8856957a-cc82-49cb-9f53-9802d4e84818 14fe7961f1781df1d449f151d38801a0 { 'aliquot_tag': 'ALQ_6845b38d', 'gdc_sample_type': 'Primary Tumor' } C3L-00395.Targeted.T.hg38 C3L-00395 PDA Targeted Sequencing tumor CPT0010020010_1 4b9596de-e4e8-4623-a83c-fa87759929d3_targetedsequencing_gdc_realn.bam 7255399917 BAM harmonized CPTAC3 d568922c-87b3-48dd-b38a-52a22d2c0ae8 7e478aba9e0c2c56a37fddac651f199b { 'aliquot_tag': 'ALQ_6845b38d', 'gdc_sample_type': 'Primary Tumor' } C3L-00395.WGS.N C3L-00395 PDA WGS blood_normal CPT0019280002 CPT0019280002.WholeGenome.RP-1303.bam 63333471823 BAM aligned CPTAC3 f22e6234-f0cd-44d9-b25e-7c9eba750448 5ab09ecc18e2e61880e71abebcaf8c0d { 'aliquot_tag': 'ALQ_d2439166', 'gdc_sample_type': 'Blood Derived Normal' } @@ -2046,9 +2482,9 @@ C3L-00401.MethArray.Red.T C3L-00401 PDA Methylation Array tumor CPT0019300010 20 C3L-00401.miRNA-Seq.T C3L-00401 PDA miRNA-Seq tumor CPT0019300007 181012_UNC32-K00270_0124_AH223CBBXY_GCCAAT_S27_L004_R1_001.unaln.bam 251182047 BAM unaligned CPTAC3 b4717929-7e6d-4b4b-acc5-868415eb743c 2d28403f24c5fdd80444c42fc5a71f93 { 'aliquot_tag': 'ALQ_5905fd8d', 'gdc_sample_type': 'Primary Tumor' } C3L-00401.miRNA-Seq.T.hg38 C3L-00401 PDA miRNA-Seq tumor CPT0019300007 1f5cd054-cbfa-431d-b707-c5b85c43b3ba_mirnaseq_gdc_realn.bam 276651158 BAM harmonized CPTAC3 87a834d0-99fe-4e42-8068-87c172a69968 d6985dfd482209937fae9a3bba9d386c { 'aliquot_tag': 'ALQ_5905fd8d', 'gdc_sample_type': 'Primary Tumor' } C3L-00401.RNA-Seq.chimeric.T.hg38 C3L-00401 PDA RNA-Seq tumor CPT0019300007 63838c66-4547-41ba-ae50-6a11bbd9dbe5.rna_seq.chimeric.gdc_realn.bam 73491888 BAM chimeric harmonized CPTAC3 65cc94c0-a3f2-4999-b436-4f8814c7e740 29fcf2c86997c63ca32ecc9052e5e63a { 'aliquot_tag': 'ALQ_5905fd8d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00401.RNA-Seq.genomic.T.hg38 C3L-00401 PDA RNA-Seq tumor CPT0019300007 63838c66-4547-41ba-ae50-6a11bbd9dbe5.rna_seq.genomic.gdc_realn.bam 6659507845 BAM genomic harmonized CPTAC3 a4c5596b-bf3b-4797-a022-e2308b71fa04 f57cc9b4bf8dcedcf4fcf48705f25338 { 'aliquot_tag': 'ALQ_5905fd8d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00401.RNA-Seq.R1_L005.T C3L-00401 PDA RNA-Seq tumor CPT0019300007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATTCCT_S17_L005_R1_001.fastq.gz 3189467493 FASTQ R1_L005 unaligned CPTAC3 64ca103c-f18f-44de-b8b1-123784233175 10adbfc1871badc04af9bba5add83438 { 'aliquot_tag': 'ALQ_5905fd8d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00401.RNA-Seq.R2_L005.T C3L-00401 PDA RNA-Seq tumor CPT0019300007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATTCCT_S17_L005_R2_001.fastq.gz 3457497108 FASTQ R2_L005 unaligned CPTAC3 65b84802-756a-4188-8cee-262aac9e0685 c51f136a249f42b92cbd06c103986cb4 { 'aliquot_tag': 'ALQ_5905fd8d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00401.RNA-Seq.genomic.T.hg38 C3L-00401 PDA RNA-Seq tumor CPT0019300007 63838c66-4547-41ba-ae50-6a11bbd9dbe5.rna_seq.genomic.gdc_realn.bam 6659507845 BAM genomic harmonized CPTAC3 eded2a3f-f0c8-42b8-9570-fc901b05d5d9 f57cc9b4bf8dcedcf4fcf48705f25338 { 'aliquot_tag': 'ALQ_5905fd8d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00401.RNA-Seq.R1_L005.T C3L-00401 PDA RNA-Seq tumor CPT0019300007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATTCCT_S17_L005_R1_001.fastq.gz 3189467493 FASTQ R1_L005 unaligned CPTAC3 64ca103c-f18f-44de-b8b1-123784233175 10adbfc1871badc04af9bba5add83438 { 'aliquot_tag': 'ALQ_5905fd8d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00401.RNA-Seq.R2_L005.T C3L-00401 PDA RNA-Seq tumor CPT0019300007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATTCCT_S17_L005_R2_001.fastq.gz 3457497108 FASTQ R2_L005 unaligned CPTAC3 65b84802-756a-4188-8cee-262aac9e0685 c51f136a249f42b92cbd06c103986cb4 { 'aliquot_tag': 'ALQ_5905fd8d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-00401.RNA-Seq.transcriptome.T.hg38 C3L-00401 PDA RNA-Seq tumor CPT0019300007 63838c66-4547-41ba-ae50-6a11bbd9dbe5.rna_seq.transcriptome.gdc_realn.bam 9884280601 BAM transcriptome harmonized CPTAC3 18dc05c1-f25b-462f-8a33-514fa0458d1b 8219b48df175dc4b81a6bdc2f4e8ea51 { 'aliquot_tag': 'ALQ_5905fd8d', 'gdc_sample_type': 'Primary Tumor' } C3L-00401.Targeted.T C3L-00401 PDA Targeted Sequencing tumor CPT0019300010_1 CPT0019300010_1.CustomSelection.RP-1303.PDO-18786.bam 4033825505 BAM aligned CPTAC3 d71359fd-38e4-406f-aac4-4bb5d3ac5a8f 6b80ae1948f012fbc305f2f1a8b28ce2 { 'aliquot_tag': 'ALQ_ddf6131c', 'gdc_sample_type': 'Primary Tumor' } C3L-00401.Targeted.T.hg38 C3L-00401 PDA Targeted Sequencing tumor CPT0019300010_1 53031bb7-6216-4ea9-a7fd-86390fb1af88_targetedsequencing_gdc_realn.bam 5723151036 BAM harmonized CPTAC3 2472e2ee-f790-4f1c-a6fa-8a042c427208 a7d2dd5ce1659f341ea892ef770bd87e { 'aliquot_tag': 'ALQ_ddf6131c', 'gdc_sample_type': 'Primary Tumor' } @@ -2072,12 +2508,12 @@ C3L-00412.miRNA-Seq.A C3L-00412 LUAD miRNA-Seq tissue_normal CPT0023320006 18110 C3L-00412.miRNA-Seq.A.hg38 C3L-00412 LUAD miRNA-Seq tissue_normal CPT0023320006 70098b82-d1c1-4d35-b466-cc950280cf8c_mirnaseq_gdc_realn.bam 224130132 BAM harmonized CPTAC3 68645745-d20f-4983-b31a-520b29f74d49 d40746da015ec06b0ad086e1e048c6aa { 'aliquot_tag': 'ALQ_7e3dc6d6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00412.RNA-Seq.chimeric.A.hg38 C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 aed7472c-3fc6-4bc1-a837-bc3ed0ee0634.rna_seq.chimeric.gdc_realn.bam 34048652 BAM chimeric harmonized CPTAC3 e30159c8-dc15-49a8-ad3c-ad7a58c4772b 7a25796947971e98b00bb0cabdbbf786 { 'aliquot_tag': 'ALQ_7e3dc6d6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00412.RNA-Seq.chimeric.T.hg38 C3L-00412 LUAD RNA-Seq tumor CPT0023310013 42249195-1bac-4fe7-b64c-9e2646ad06ff.rna_seq.chimeric.gdc_realn.bam 74415639 BAM chimeric harmonized CPTAC3 1f3d1efa-bb27-4221-935b-aa235eb083a4 238ff15381be787dfe84866453bca078 { 'aliquot_tag': 'ALQ_50ec79c8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00412.RNA-Seq.genomic.A.hg38 C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 aed7472c-3fc6-4bc1-a837-bc3ed0ee0634.rna_seq.genomic.gdc_realn.bam 6069837862 BAM genomic harmonized CPTAC3 788a78ca-4dfb-4c0f-8f5f-929e10359f88 58e1fb744db99d1c3f5f9c9857105749 { 'aliquot_tag': 'ALQ_7e3dc6d6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00412.RNA-Seq.genomic.A.hg38 C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 aed7472c-3fc6-4bc1-a837-bc3ed0ee0634.rna_seq.genomic.gdc_realn.bam 6069837862 BAM genomic harmonized CPTAC3 13691e74-e95b-43f0-9a95-9704f21f0163 58e1fb744db99d1c3f5f9c9857105749 { 'aliquot_tag': 'ALQ_7e3dc6d6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00412.RNA-Seq.genomic.T.hg38 C3L-00412 LUAD RNA-Seq tumor CPT0023310013 42249195-1bac-4fe7-b64c-9e2646ad06ff.rna_seq.genomic.gdc_realn.bam 11536304849 BAM genomic harmonized CPTAC3 a2053cb6-0649-44b8-ab7c-c6abc798bf4f 6c7dc14d5cb1ca14e170938b1815f37c { 'aliquot_tag': 'ALQ_50ec79c8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00412.RNA-Seq.R1_L004.T C3L-00412 LUAD RNA-Seq tumor CPT0023310013 171011_UNC31-K00269_0086_AHLJLCBBXX_CAGATC_S12_L004_R1_001.fastq.gz 4738712256 FASTQ R1_L004 unaligned CPTAC3 b950f8d9-f501-4715-86b8-1eafd595e548 18072ca6685be2b85dea21871794ace1 { 'aliquot_tag': 'ALQ_50ec79c8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00412.RNA-Seq.R1_L007.A C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L007_R1_001.fastq.gz 2707979121 FASTQ R1_L007 unaligned CPTAC3 7a8c5c0f-4635-499c-a8cf-a2ecd6bfc5a9 3e0e963fd07a56f152a1c516ffc5f68b { 'aliquot_tag': 'ALQ_7e3dc6d6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00412.RNA-Seq.R2_L004.T C3L-00412 LUAD RNA-Seq tumor CPT0023310013 171011_UNC31-K00269_0086_AHLJLCBBXX_CAGATC_S12_L004_R2_001.fastq.gz 5066567221 FASTQ R2_L004 unaligned CPTAC3 0e36cba6-2ded-4e79-a7ec-10ad7c1904f7 2897e6c316ed07ebcce8ac9c56dbe9f3 { 'aliquot_tag': 'ALQ_50ec79c8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00412.RNA-Seq.R2_L007.A C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L007_R2_001.fastq.gz 3043817258 FASTQ R2_L007 unaligned CPTAC3 16d35297-a6f6-4651-b0b2-fad1ca63e804 0c73625e1ddff7b92e34ffe9679f0b62 { 'aliquot_tag': 'ALQ_7e3dc6d6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00412.RNA-Seq.R1_L004.T C3L-00412 LUAD RNA-Seq tumor CPT0023310013 171011_UNC31-K00269_0086_AHLJLCBBXX_CAGATC_S12_L004_R1_001.fastq.gz 4738712256 FASTQ R1_L004 unaligned CPTAC3 b950f8d9-f501-4715-86b8-1eafd595e548 18072ca6685be2b85dea21871794ace1 { 'aliquot_tag': 'ALQ_50ec79c8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00412.RNA-Seq.R1_L007.A C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L007_R1_001.fastq.gz 2707979121 FASTQ R1_L007 unaligned CPTAC3 7a8c5c0f-4635-499c-a8cf-a2ecd6bfc5a9 3e0e963fd07a56f152a1c516ffc5f68b { 'aliquot_tag': 'ALQ_7e3dc6d6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00412.RNA-Seq.R2_L004.T C3L-00412 LUAD RNA-Seq tumor CPT0023310013 171011_UNC31-K00269_0086_AHLJLCBBXX_CAGATC_S12_L004_R2_001.fastq.gz 5066567221 FASTQ R2_L004 unaligned CPTAC3 0e36cba6-2ded-4e79-a7ec-10ad7c1904f7 2897e6c316ed07ebcce8ac9c56dbe9f3 { 'aliquot_tag': 'ALQ_50ec79c8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00412.RNA-Seq.R2_L007.A C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L007_R2_001.fastq.gz 3043817258 FASTQ R2_L007 unaligned CPTAC3 16d35297-a6f6-4651-b0b2-fad1ca63e804 0c73625e1ddff7b92e34ffe9679f0b62 { 'aliquot_tag': 'ALQ_7e3dc6d6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-00412.RNA-Seq.transcriptome.A.hg38 C3L-00412 LUAD RNA-Seq tissue_normal CPT0023320006 aed7472c-3fc6-4bc1-a837-bc3ed0ee0634.rna_seq.transcriptome.gdc_realn.bam 6720907953 BAM transcriptome harmonized CPTAC3 7c2c257c-cd1f-4891-9d1b-25c5e3e2da03 26051fbaf503a284a7f9f054af8ce683 { 'aliquot_tag': 'ALQ_7e3dc6d6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00412.RNA-Seq.transcriptome.T.hg38 C3L-00412 LUAD RNA-Seq tumor CPT0023310013 42249195-1bac-4fe7-b64c-9e2646ad06ff.rna_seq.transcriptome.gdc_realn.bam 10490668218 BAM transcriptome harmonized CPTAC3 c4caf75b-d199-4050-a29d-d03d09b37b7c e27087db0f34d6b7afa6100091a5d3b8 { 'aliquot_tag': 'ALQ_50ec79c8', 'gdc_sample_type': 'Primary Tumor' } C3L-00412.WGS.A C3L-00412 LUAD WGS tissue_normal CPT0023320009 CPT0023320009.WholeGenome.RP-1303.bam 60587993939 BAM aligned CPTAC3 6ffb1fc9-a512-40a9-b369-3f2e4f4dc4a5 d8695569b445735c60a7c37833a4ed2a { 'aliquot_tag': 'ALQ_ee82db47', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2097,12 +2533,15 @@ C3L-00413.MethArray.Red.T C3L-00413 UCEC Methylation Array tumor CPT0009980006 2 C3L-00413.miRNA-Seq.T C3L-00413 UCEC miRNA-Seq tumor CPT0009980009 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L003_R1_001.unaln.bam 251069247 BAM unaligned CPTAC3 7a303066-7bd3-4824-923d-f4506de6f969 ccf0c0e4902104a1b32f578619783acf { 'aliquot_tag': 'ALQ_e3fcb8b3', 'gdc_sample_type': 'Primary Tumor' } C3L-00413.miRNA-Seq.T.hg38 C3L-00413 UCEC miRNA-Seq tumor CPT0009980009 db2cda3a-7b8d-491a-b908-1a37bd9590a9_mirnaseq_gdc_realn.bam 273180278 BAM harmonized CPTAC3 067a65f4-8f74-4a74-875a-d43bbbea1dcc 2d1e1986fe05b69b0729e772072b1335 { 'aliquot_tag': 'ALQ_e3fcb8b3', 'gdc_sample_type': 'Primary Tumor' } C3L-00413.RNA-Seq.chimeric.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0009980009 b13b2626-0127-4087-811e-5f4b103935ec.rna_seq.chimeric.gdc_realn.bam 154588183 BAM chimeric harmonized CPTAC3 b841f579-7837-4882-9d87-d5f30664c063 e35ca2cdd5c1c531151651c183a9ae58 { 'aliquot_tag': 'ALQ_e3fcb8b3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00413.RNA-Seq.genomic.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0009980009 b13b2626-0127-4087-811e-5f4b103935ec.rna_seq.genomic.gdc_realn.bam 9222740317 BAM genomic harmonized CPTAC3 06b2b663-aa46-4153-973c-201cd97db7e2 c6de244a27448c7d06bebae77d671abe { 'aliquot_tag': 'ALQ_e3fcb8b3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00413.RNA-Seq.R1_L006.T C3L-00413 UCEC RNA-Seq tumor CPT0009980009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L006_R1_001.fastq.gz 4560838380 FASTQ R1_L006 unaligned CPTAC3 e46aae2a-0162-443c-9f2d-7f95cd2f132e 2bd22863df9cc960c017db0b9373d562 { 'aliquot_tag': 'ALQ_e3fcb8b3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00413.RNA-Seq.R1_.T C3L-00413 UCEC RNA-Seq tumor CPT0349650001 20210723_P2_E2_WB7988-plate2_S50_R1_001.fastq.gz 4600956944 FASTQ R1_ unaligned CPTAC3 b1d02ba1-b318-4e37-afd5-0f71255be116 0824a04b3574d7ccb735dcbd688aad7a { 'aliquot_tag': 'ALQ_592674da', 'gdc_sample_type': 'Primary Tumor' } -C3L-00413.RNA-Seq.R2_L006.T C3L-00413 UCEC RNA-Seq tumor CPT0009980009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L006_R2_001.fastq.gz 4758626872 FASTQ R2_L006 unaligned CPTAC3 05b8da1e-d495-4023-9aca-b71417350ee1 03112225a37f051ba49f3b11df819282 { 'aliquot_tag': 'ALQ_e3fcb8b3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00413.RNA-Seq.R2_.T C3L-00413 UCEC RNA-Seq tumor CPT0349650001 20210723_P2_E2_WB7988-plate2_S50_R2_001.fastq.gz 4698611451 FASTQ R2_ unaligned CPTAC3 25a81b26-0732-4579-b846-46aa6439dcbd 79403ef590fbdec5559912b6fdb03d32 { 'aliquot_tag': 'ALQ_592674da', 'gdc_sample_type': 'Primary Tumor' } +C3L-00413.RNA-Seq.chimeric.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0349650001 7472f815-529d-4c2b-815b-be731c9ff4b9.rna_seq.chimeric.gdc_realn.bam 110013338 BAM chimeric harmonized CPTAC3 da4eb599-553c-46f5-8774-c10e66949cd2 e66ce6cf1c4f94c6560cad1c9fd3e13b { 'aliquot_tag': 'ALQ_592674da', 'gdc_sample_type': 'Primary Tumor' } +C3L-00413.RNA-Seq.genomic.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0009980009 b13b2626-0127-4087-811e-5f4b103935ec.rna_seq.genomic.gdc_realn.bam 9222740317 BAM genomic harmonized CPTAC3 e8811547-39e4-4ca2-a9f8-35ebdd95091e c6de244a27448c7d06bebae77d671abe { 'aliquot_tag': 'ALQ_e3fcb8b3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00413.RNA-Seq.genomic.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0349650001 7472f815-529d-4c2b-815b-be731c9ff4b9.rna_seq.genomic.gdc_realn.bam 7841772084 BAM genomic harmonized CPTAC3 1865e331-f1ac-45ae-b0d7-8703cdd66009 93fa34a7b1e69a68f2e24daa206d8c53 { 'aliquot_tag': 'ALQ_592674da', 'gdc_sample_type': 'Primary Tumor' } +C3L-00413.RNA-Seq.R1_L006.T C3L-00413 UCEC RNA-Seq tumor CPT0009980009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L006_R1_001.fastq.gz 4560838380 FASTQ R1_L006 unaligned CPTAC3 e46aae2a-0162-443c-9f2d-7f95cd2f132e 2bd22863df9cc960c017db0b9373d562 { 'aliquot_tag': 'ALQ_e3fcb8b3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00413.RNA-Seq.R2_L006.T C3L-00413 UCEC RNA-Seq tumor CPT0009980009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGAAA_S1_L006_R2_001.fastq.gz 4758626872 FASTQ R2_L006 unaligned CPTAC3 05b8da1e-d495-4023-9aca-b71417350ee1 03112225a37f051ba49f3b11df819282 { 'aliquot_tag': 'ALQ_e3fcb8b3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-00413.RNA-Seq.T C3L-00413 UCEC RNA-Seq tumor CPT0349650001 20210723_P2_E2_WB7988-plate2_S50_R1_001.fastq.gz 4600956944 FASTQ unaligned CPTAC3 b1d02ba1-b318-4e37-afd5-0f71255be116 0824a04b3574d7ccb735dcbd688aad7a +C3L-00413.RNA-Seq.T C3L-00413 UCEC RNA-Seq tumor CPT0349650001 20210723_P2_E2_WB7988-plate2_S50_R2_001.fastq.gz 4698611451 FASTQ unaligned CPTAC3 25a81b26-0732-4579-b846-46aa6439dcbd 79403ef590fbdec5559912b6fdb03d32 C3L-00413.RNA-Seq.transcriptome.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0009980009 b13b2626-0127-4087-811e-5f4b103935ec.rna_seq.transcriptome.gdc_realn.bam 12036275147 BAM transcriptome harmonized CPTAC3 a2368177-78f5-4957-945e-e7b901cb17d3 5f0b8312bd8828849f5558e373120775 { 'aliquot_tag': 'ALQ_e3fcb8b3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00413.RNA-Seq.transcriptome.T.hg38 C3L-00413 UCEC RNA-Seq tumor CPT0349650001 7472f815-529d-4c2b-815b-be731c9ff4b9.rna_seq.transcriptome.gdc_realn.bam 4727373058 BAM transcriptome harmonized CPTAC3 afd60849-9ab4-4523-898a-f110d7c29cee b068a3de0f389cc68d30105fd3edbb6a { 'aliquot_tag': 'ALQ_592674da', 'gdc_sample_type': 'Primary Tumor' } C3L-00413.WGS.N C3L-00413 UCEC WGS blood_normal CPT0019850002 CPT0019850002.WholeGenome.RP-1303.bam 70009069294 BAM aligned CPTAC3 da80dcfd-41b5-4dc9-9c39-0e8c55ce7f7c ae16b8cad65b87212e0c7b7acb99bfd2 { 'aliquot_tag': 'ALQ_8b4876b1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00413.WGS.N.hg38 C3L-00413 UCEC WGS blood_normal CPT0019850002 92bebf14-5fd0-453e-99a3-c7041b9cde22_gdc_realn.bam 100033312069 BAM harmonized CPTAC3 22c5648f-e238-4e98-b2d5-32d41ab94314 cd9d46c8e526305379aaf42a0b219bc0 { 'aliquot_tag': 'ALQ_8b4876b1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00413.WGS.T C3L-00413 UCEC WGS tumor CPT0009980006 CPT0009980006.WholeGenome.RP-1303.bam 57534242825 BAM aligned CPTAC3 514c9e6e-510d-4f2e-871d-8876b8a91c4e b34cbf546578eb4fec9f960a5180ec08 { 'aliquot_tag': 'ALQ_7343a522', 'gdc_sample_type': 'Primary Tumor' } @@ -2121,12 +2560,12 @@ C3L-00415.miRNA-Seq.T C3L-00415 LSCC miRNA-Seq tumor CPT0010050009 181012_UNC32- C3L-00415.miRNA-Seq.T.hg38 C3L-00415 LSCC miRNA-Seq tumor CPT0010050009 9f719a4a-a9b0-4a83-82b3-b1e1178dade5_mirnaseq_gdc_realn.bam 218047899 BAM harmonized CPTAC3 255eea37-2692-45c8-84cf-15fa9e7ff0ea 5b4f53c8b44b8773db58f48427ad278d { 'aliquot_tag': 'ALQ_65516887', 'gdc_sample_type': 'Primary Tumor' } C3L-00415.RNA-Seq.chimeric.A.hg38 C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 b1e4760c-7fd9-435a-9ba4-e37826e8af10.rna_seq.chimeric.gdc_realn.bam 39453112 BAM chimeric harmonized CPTAC3 1b784dfa-f950-4018-a2e0-849b13d67960 41189350674453aa071289cae59182af { 'aliquot_tag': 'ALQ_22f11257', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00415.RNA-Seq.chimeric.T.hg38 C3L-00415 LSCC RNA-Seq tumor CPT0010050009 88d1b643-9da5-4213-8863-e0439615bc2c.rna_seq.chimeric.gdc_realn.bam 137800946 BAM chimeric harmonized CPTAC3 dee732dd-0d32-4c93-ac07-d04e479697e2 cddff14ad6dd368000bdea9a2072e901 { 'aliquot_tag': 'ALQ_65516887', 'gdc_sample_type': 'Primary Tumor' } -C3L-00415.RNA-Seq.genomic.A.hg38 C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 b1e4760c-7fd9-435a-9ba4-e37826e8af10.rna_seq.genomic.gdc_realn.bam 7539237893 BAM genomic harmonized CPTAC3 07f4fe41-0277-4ddc-92bd-5c498aea03a9 090a34bd90f3358a0a51b2d399774031 { 'aliquot_tag': 'ALQ_22f11257', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00415.RNA-Seq.genomic.T.hg38 C3L-00415 LSCC RNA-Seq tumor CPT0010050009 88d1b643-9da5-4213-8863-e0439615bc2c.rna_seq.genomic.gdc_realn.bam 7562413996 BAM genomic harmonized CPTAC3 e001112d-3e79-434e-89cf-e379a39ae093 1c9745ad6af05f11728b83184ff00f78 { 'aliquot_tag': 'ALQ_65516887', 'gdc_sample_type': 'Primary Tumor' } -C3L-00415.RNA-Seq.R1_L004.A C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 180516_UNC32-K00270_0095_AHTY5LBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 3647270243 FASTQ R1_L004 unaligned CPTAC3 8100a0ca-c430-4b33-85cf-3abe321fb359 31bd5bc98c869ec965c2ad2f9bd5fb52 { 'aliquot_tag': 'ALQ_22f11257', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00415.RNA-Seq.R1_L006.T C3L-00415 LSCC RNA-Seq tumor CPT0010050009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L006_R1_001.fastq.gz 3765173950 FASTQ R1_L006 unaligned CPTAC3 49738f7f-2551-46ea-83e9-c36f55a2d3cb b6a35eecb42be2131547a5c3821bd9a6 { 'aliquot_tag': 'ALQ_65516887', 'gdc_sample_type': 'Primary Tumor' } -C3L-00415.RNA-Seq.R2_L004.A C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 180516_UNC32-K00270_0095_AHTY5LBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 3753832644 FASTQ R2_L004 unaligned CPTAC3 dc450c88-d669-4441-a21f-5acc6150c721 19ee760a4cd348b15f5f52870352f024 { 'aliquot_tag': 'ALQ_22f11257', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00415.RNA-Seq.R2_L006.T C3L-00415 LSCC RNA-Seq tumor CPT0010050009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L006_R2_001.fastq.gz 4094701287 FASTQ R2_L006 unaligned CPTAC3 b04807f8-ed2a-4bba-8647-feb8bd679a10 f853d808443d3b17c63f134499ac1bf8 { 'aliquot_tag': 'ALQ_65516887', 'gdc_sample_type': 'Primary Tumor' } +C3L-00415.RNA-Seq.genomic.A.hg38 C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 b1e4760c-7fd9-435a-9ba4-e37826e8af10.rna_seq.genomic.gdc_realn.bam 7539237893 BAM genomic harmonized CPTAC3 341e6ec1-fbed-4439-b762-da0b7fe11488 090a34bd90f3358a0a51b2d399774031 { 'aliquot_tag': 'ALQ_22f11257', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00415.RNA-Seq.genomic.T.hg38 C3L-00415 LSCC RNA-Seq tumor CPT0010050009 88d1b643-9da5-4213-8863-e0439615bc2c.rna_seq.genomic.gdc_realn.bam 7562413996 BAM genomic harmonized CPTAC3 96821645-887e-4362-b647-d3a28c813597 1c9745ad6af05f11728b83184ff00f78 { 'aliquot_tag': 'ALQ_65516887', 'gdc_sample_type': 'Primary Tumor' } +C3L-00415.RNA-Seq.R1_L004.A C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 180516_UNC32-K00270_0095_AHTY5LBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 3647270243 FASTQ R1_L004 unaligned CPTAC3 8100a0ca-c430-4b33-85cf-3abe321fb359 31bd5bc98c869ec965c2ad2f9bd5fb52 { 'aliquot_tag': 'ALQ_22f11257', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00415.RNA-Seq.R1_L006.T C3L-00415 LSCC RNA-Seq tumor CPT0010050009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L006_R1_001.fastq.gz 3765173950 FASTQ R1_L006 unaligned CPTAC3 49738f7f-2551-46ea-83e9-c36f55a2d3cb b6a35eecb42be2131547a5c3821bd9a6 { 'aliquot_tag': 'ALQ_65516887', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00415.RNA-Seq.R2_L004.A C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 180516_UNC32-K00270_0095_AHTY5LBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 3753832644 FASTQ R2_L004 unaligned CPTAC3 dc450c88-d669-4441-a21f-5acc6150c721 19ee760a4cd348b15f5f52870352f024 { 'aliquot_tag': 'ALQ_22f11257', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-00415.RNA-Seq.R2_L006.T C3L-00415 LSCC RNA-Seq tumor CPT0010050009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTGGCC_S4_L006_R2_001.fastq.gz 4094701287 FASTQ R2_L006 unaligned CPTAC3 b04807f8-ed2a-4bba-8647-feb8bd679a10 f853d808443d3b17c63f134499ac1bf8 { 'aliquot_tag': 'ALQ_65516887', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-00415.RNA-Seq.transcriptome.A.hg38 C3L-00415 LSCC RNA-Seq tissue_normal CPT0010060009 b1e4760c-7fd9-435a-9ba4-e37826e8af10.rna_seq.transcriptome.gdc_realn.bam 9440510215 BAM transcriptome harmonized CPTAC3 ffdf9074-4efd-4507-94a1-98601bb6627e 27410ab14ba2d44a3d886e71b381c3dd { 'aliquot_tag': 'ALQ_22f11257', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00415.RNA-Seq.transcriptome.T.hg38 C3L-00415 LSCC RNA-Seq tumor CPT0010050009 88d1b643-9da5-4213-8863-e0439615bc2c.rna_seq.transcriptome.gdc_realn.bam 10288975537 BAM transcriptome harmonized CPTAC3 a17cefd9-50c3-4ceb-95d2-8fc5ba6aa7ac 91e56e65d0d991a74dd8f1ce20c6287e { 'aliquot_tag': 'ALQ_65516887', 'gdc_sample_type': 'Primary Tumor' } C3L-00415.WGS.A C3L-00415 LSCC WGS tissue_normal CPT0010060006 CPT0010060006.WholeGenome.RP-1303.bam 56653408842 BAM aligned CPTAC3 3d5af375-53b4-4bd2-81ba-8d2fe82e3c0d 42a8deb9d43d03bc1e04127b4ed6f306 { 'aliquot_tag': 'ALQ_b24e0fc6', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2151,12 +2590,12 @@ C3L-00416.miRNA-Seq.T C3L-00416 CCRCC miRNA-Seq tumor CPT0010110009 181012_UNC32 C3L-00416.miRNA-Seq.T.hg38 C3L-00416 CCRCC miRNA-Seq tumor CPT0010110009 bd92802d-9e7d-4dd6-bf53-243b2d4a4421_mirnaseq_gdc_realn.bam 241424959 BAM harmonized CPTAC3 0f7cd17a-47f0-4096-862a-a839a2ece81a 43869dd7beb2b733526ff91f672283fc { 'aliquot_tag': 'ALQ_5b8d1de2', 'gdc_sample_type': 'Primary Tumor' } C3L-00416.RNA-Seq.chimeric.A.hg38 C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 48eb23b7-2288-4ff8-bf4f-9a7620bf35e8.rna_seq.chimeric.gdc_realn.bam 82424783 BAM chimeric harmonized CPTAC3 7c18dcb1-8f59-4b71-ba57-bb0be19132b3 0bc8ade8005632cfb592822d9eada4c9 { 'aliquot_tag': 'ALQ_8c927aa3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00416.RNA-Seq.chimeric.T.hg38 C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 83cebb3d-12be-483c-aa6f-3d69146c6620.rna_seq.chimeric.gdc_realn.bam 103205184 BAM chimeric harmonized CPTAC3 9d818be3-95e7-4ddc-838d-97a3d39995d0 8ae9db32a089e263504c4853759a6be1 { 'aliquot_tag': 'ALQ_5b8d1de2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00416.RNA-Seq.genomic.A.hg38 C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 48eb23b7-2288-4ff8-bf4f-9a7620bf35e8.rna_seq.genomic.gdc_realn.bam 8861154512 BAM genomic harmonized CPTAC3 1aeb7903-938d-4315-b4ad-b05d9347f9d4 70cbcbcc718ffa51ce50007e92fcb80d { 'aliquot_tag': 'ALQ_8c927aa3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00416.RNA-Seq.genomic.T.hg38 C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 83cebb3d-12be-483c-aa6f-3d69146c6620.rna_seq.genomic.gdc_realn.bam 7075074193 BAM genomic harmonized CPTAC3 a59da27f-5340-44e7-bd47-622e2fc70b41 10d03f0a7674dda878d52ac686041e3e { 'aliquot_tag': 'ALQ_5b8d1de2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00416.RNA-Seq.R1_L004.A C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGGCC_S45_L004_R1_001.fastq.gz 4155676499 FASTQ R1_L004 unaligned CPTAC3 3b4d239a-0a2d-426c-916d-d3a8a92b5573 6e8e90e689298ad85e0568fef8a125f7 { 'aliquot_tag': 'ALQ_8c927aa3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00416.RNA-Seq.R1_L006.T C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTTTCG_S21_L006_R1_001.fastq.gz 3776319086 FASTQ R1_L006 unaligned CPTAC3 2cb1f65c-8544-4a2e-8e53-72184f472a1a 4bbe25de640e3edb7e66600e87da6ab2 { 'aliquot_tag': 'ALQ_5b8d1de2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00416.RNA-Seq.R2_L004.A C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGGCC_S45_L004_R2_001.fastq.gz 4301948352 FASTQ R2_L004 unaligned CPTAC3 bc1b8613-80a4-4b79-ab7d-479448188861 4c686133dbd6213e5210f4071a527d31 { 'aliquot_tag': 'ALQ_8c927aa3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00416.RNA-Seq.R2_L006.T C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTTTCG_S21_L006_R2_001.fastq.gz 4118298802 FASTQ R2_L006 unaligned CPTAC3 ad8325a4-34b9-473f-946e-1a779f0bf08b 8a0499fcd68ec53c276c76dd8460749a { 'aliquot_tag': 'ALQ_5b8d1de2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00416.RNA-Seq.genomic.A.hg38 C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 48eb23b7-2288-4ff8-bf4f-9a7620bf35e8.rna_seq.genomic.gdc_realn.bam 8861154512 BAM genomic harmonized CPTAC3 0a904b33-982e-4502-a09e-5708c724239f 70cbcbcc718ffa51ce50007e92fcb80d { 'aliquot_tag': 'ALQ_8c927aa3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00416.RNA-Seq.genomic.T.hg38 C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 83cebb3d-12be-483c-aa6f-3d69146c6620.rna_seq.genomic.gdc_realn.bam 7075074193 BAM genomic harmonized CPTAC3 de2604b3-678a-4b6f-a9a2-3cfc60549b0d 10d03f0a7674dda878d52ac686041e3e { 'aliquot_tag': 'ALQ_5b8d1de2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00416.RNA-Seq.R1_L004.A C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGGCC_S45_L004_R1_001.fastq.gz 4155676499 FASTQ R1_L004 unaligned CPTAC3 3b4d239a-0a2d-426c-916d-d3a8a92b5573 6e8e90e689298ad85e0568fef8a125f7 { 'aliquot_tag': 'ALQ_8c927aa3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00416.RNA-Seq.R1_L006.T C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTTTCG_S21_L006_R1_001.fastq.gz 3776319086 FASTQ R1_L006 unaligned CPTAC3 2cb1f65c-8544-4a2e-8e53-72184f472a1a 4bbe25de640e3edb7e66600e87da6ab2 { 'aliquot_tag': 'ALQ_5b8d1de2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00416.RNA-Seq.R2_L004.A C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGGCC_S45_L004_R2_001.fastq.gz 4301948352 FASTQ R2_L004 unaligned CPTAC3 bc1b8613-80a4-4b79-ab7d-479448188861 4c686133dbd6213e5210f4071a527d31 { 'aliquot_tag': 'ALQ_8c927aa3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-00416.RNA-Seq.R2_L006.T C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 170818_UNC32-K00270_0051_BHLCCHBBXX_GTTTCG_S21_L006_R2_001.fastq.gz 4118298802 FASTQ R2_L006 unaligned CPTAC3 ad8325a4-34b9-473f-946e-1a779f0bf08b 8a0499fcd68ec53c276c76dd8460749a { 'aliquot_tag': 'ALQ_5b8d1de2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-00416.RNA-Seq.transcriptome.A.hg38 C3L-00416 CCRCC RNA-Seq tissue_normal CPT0010120006 48eb23b7-2288-4ff8-bf4f-9a7620bf35e8.rna_seq.transcriptome.gdc_realn.bam 9710188396 BAM transcriptome harmonized CPTAC3 0fe65e04-9be9-42dd-aa6e-d4cedb07e4e8 eee66291e1325fca04020df23334b40c { 'aliquot_tag': 'ALQ_8c927aa3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00416.RNA-Seq.transcriptome.T.hg38 C3L-00416 CCRCC RNA-Seq tumor CPT0010110009 83cebb3d-12be-483c-aa6f-3d69146c6620.rna_seq.transcriptome.gdc_realn.bam 10505420732 BAM transcriptome harmonized CPTAC3 2267b4d1-bda2-433a-a91f-bd24b9b5eb37 f4663cd02bbb95dbb8a85d55a838f3c2 { 'aliquot_tag': 'ALQ_5b8d1de2', 'gdc_sample_type': 'Primary Tumor' } C3L-00416.WGS.A C3L-00416 CCRCC WGS tissue_normal CPT0010120009 CPT0010120009.WholeGenome.RP-1303.bam 52231401379 BAM aligned CPTAC3 a3691232-f058-4e5b-9aca-ab8756a1cd82 e143204308a81d1630dde547bc22b254 { 'aliquot_tag': 'ALQ_1c2d6732', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2187,15 +2626,15 @@ C3L-00418.DUP_b1ad8a1f.miRNA-Seq.T C3L-00418 CCRCC miRNA-Seq tumor CPT0006640006 C3L-00418.DUP_b1ad8a1f.miRNA-Seq.T.hg38 C3L-00418 CCRCC miRNA-Seq tumor CPT0006640006 d20c75ec-7738-49fd-bc04-5aecbb640490_mirnaseq_gdc_realn.bam 322795809 BAM harmonized CPTAC3 15af38d6-1b6c-47ec-905b-7cf6b6fba7bc 6463cb6312704a8be646fe1acbc3b4a4 { 'aliquot_tag': 'DUP_b1ad8a1f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00418.DUP_b1ad8a1f.RNA-Seq.chimeric.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 012832a5-c876-473b-a162-6748fdc75560.rna_seq.chimeric.gdc_realn.bam 45408799 BAM chimeric harmonized CPTAC3 b1b55e04-de3e-438b-82bd-67bfb34a5389 13a387070e7520d66e4661e1e52470aa { 'aliquot_tag': 'DUP_b1ad8a1f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00418.DUP_b1ad8a1f.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 012832a5-c876-473b-a162-6748fdc75560.rna_seq.genomic.gdc_realn.bam 7396376926 BAM genomic harmonized CPTAC3 0874e000-1854-475a-b8cb-af856d2a63ab 88e5410f2c566e8aba1dbe5263f65723 { 'aliquot_tag': 'DUP_b1ad8a1f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00418.DUP_b1ad8a1f.RNA-Seq.R1_L006.T C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 200519_UNC31-K00269_0280_BHHKGNBBXY_GACGTCTT-GGTTCACC_S23_L006_R1_001.fastq.gz 3456249727 FASTQ R1_L006 unaligned CPTAC3 f86a8aa3-2366-4dec-81b2-bd0ac65a29f4 c2724b55d4115b06469f124d6120eaa7 { 'aliquot_tag': 'DUP_b1ad8a1f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00418.DUP_b1ad8a1f.RNA-Seq.R2_L006.T C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 200519_UNC31-K00269_0280_BHHKGNBBXY_GACGTCTT-GGTTCACC_S23_L006_R2_001.fastq.gz 3947205801 FASTQ R2_L006 unaligned CPTAC3 998539bc-b93c-4779-b240-b7fd479bde71 fa3bfe113af2f158143009f248613980 { 'aliquot_tag': 'DUP_b1ad8a1f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00418.DUP_b1ad8a1f.RNA-Seq.R1_L006.T C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 200519_UNC31-K00269_0280_BHHKGNBBXY_GACGTCTT-GGTTCACC_S23_L006_R1_001.fastq.gz 3456249727 FASTQ R1_L006 unaligned CPTAC3 f86a8aa3-2366-4dec-81b2-bd0ac65a29f4 c2724b55d4115b06469f124d6120eaa7 { 'aliquot_tag': 'DUP_b1ad8a1f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3L-00418.DUP_b1ad8a1f.RNA-Seq.R2_L006.T C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 200519_UNC31-K00269_0280_BHHKGNBBXY_GACGTCTT-GGTTCACC_S23_L006_R2_001.fastq.gz 3947205801 FASTQ R2_L006 unaligned CPTAC3 998539bc-b93c-4779-b240-b7fd479bde71 fa3bfe113af2f158143009f248613980 { 'aliquot_tag': 'DUP_b1ad8a1f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3L-00418.DUP_b1ad8a1f.RNA-Seq.transcriptome.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006640006 012832a5-c876-473b-a162-6748fdc75560.rna_seq.transcriptome.gdc_realn.bam 10420873871 BAM transcriptome harmonized CPTAC3 a536a5c0-f912-4540-a3b1-75411bad868a 14ccc067b19a1e3900f07ffe4dbd929b { 'aliquot_tag': 'DUP_b1ad8a1f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00418.DUP_f60df0cf.miRNA-Seq.T C3L-00418 CCRCC miRNA-Seq tumor CPT0006670006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAACTA_S24_L002_R1_001.unaln.bam 423544457 BAM unaligned CPTAC3 5a82f5a1-bcc8-4e7c-a660-100f26372508 ad8edad50aa6c7eeba2f81e3f7fb094d { 'aliquot_tag': 'DUP_f60df0cf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00418.DUP_f60df0cf.miRNA-Seq.T.hg38 C3L-00418 CCRCC miRNA-Seq tumor CPT0006670006 99d7de39-a684-4871-9642-fa73ff1a33fa_mirnaseq_gdc_realn.bam 466240308 BAM harmonized CPTAC3 aef293e7-838b-4947-8f8f-9529091e2d2c 28ec4a0b8e619bb9e4231407eaf61cad { 'aliquot_tag': 'DUP_f60df0cf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00418.DUP_f60df0cf.RNA-Seq.chimeric.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 2a716096-3c8a-4882-9bef-2ceb16db6993.rna_seq.chimeric.gdc_realn.bam 69517678 BAM chimeric harmonized CPTAC3 3c6366fa-cfcc-44c1-9f9b-a68fd5eb09df 0e118c5528cc246314613adf524eefcb { 'aliquot_tag': 'DUP_f60df0cf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00418.DUP_f60df0cf.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 2a716096-3c8a-4882-9bef-2ceb16db6993.rna_seq.genomic.gdc_realn.bam 8021560633 BAM genomic harmonized CPTAC3 89751688-3c90-4f0c-8356-c4d796ad597c 6d2872bc8cb9bf2a33d9a8fd27f88485 { 'aliquot_tag': 'DUP_f60df0cf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00418.DUP_f60df0cf.RNA-Seq.R1_L002.T C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 200608_UNC31-K00269_0281_AHH5NFBBXY_TGCGAGAC-CATTGTTG_S5_L002_R1_001.fastq.gz 3828295281 FASTQ R1_L002 unaligned CPTAC3 7976d875-054b-4336-83eb-2a71d65f8d01 d40b59135e3c30024bddeeeda56ea6d1 { 'aliquot_tag': 'DUP_f60df0cf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00418.DUP_f60df0cf.RNA-Seq.R2_L002.T C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 200608_UNC31-K00269_0281_AHH5NFBBXY_TGCGAGAC-CATTGTTG_S5_L002_R2_001.fastq.gz 4380437830 FASTQ R2_L002 unaligned CPTAC3 d69436e3-48bf-48d3-b5b3-67fde49da61a 399363a6a726b4b1b373c351ee40ac5c { 'aliquot_tag': 'DUP_f60df0cf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00418.DUP_f60df0cf.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 2a716096-3c8a-4882-9bef-2ceb16db6993.rna_seq.genomic.gdc_realn.bam 8021560633 BAM genomic harmonized CPTAC3 bb26ddae-e83e-4492-b864-acff2028b900 6d2872bc8cb9bf2a33d9a8fd27f88485 { 'aliquot_tag': 'DUP_f60df0cf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00418.DUP_f60df0cf.RNA-Seq.R1_L002.T C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 200608_UNC31-K00269_0281_AHH5NFBBXY_TGCGAGAC-CATTGTTG_S5_L002_R1_001.fastq.gz 3828295281 FASTQ R1_L002 unaligned CPTAC3 7976d875-054b-4336-83eb-2a71d65f8d01 d40b59135e3c30024bddeeeda56ea6d1 { 'aliquot_tag': 'DUP_f60df0cf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3L-00418.DUP_f60df0cf.RNA-Seq.R2_L002.T C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 200608_UNC31-K00269_0281_AHH5NFBBXY_TGCGAGAC-CATTGTTG_S5_L002_R2_001.fastq.gz 4380437830 FASTQ R2_L002 unaligned CPTAC3 d69436e3-48bf-48d3-b5b3-67fde49da61a 399363a6a726b4b1b373c351ee40ac5c { 'aliquot_tag': 'DUP_f60df0cf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3L-00418.DUP_f60df0cf.RNA-Seq.transcriptome.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006670006 2a716096-3c8a-4882-9bef-2ceb16db6993.rna_seq.transcriptome.gdc_realn.bam 11204754864 BAM transcriptome harmonized CPTAC3 429ca441-fb99-40d2-882c-d55a88e17139 4987b3db76f66a10b1f69c72ff36b656 { 'aliquot_tag': 'DUP_f60df0cf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00418.MethArray.Green.A C3L-00418 CCRCC Methylation Array tissue_normal CPT0006730014 204930640051_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 73a1b9b9-7cdc-4790-b1f2-07edee1545bd 1b24aec57f707adb63329f00cc1cf5e6 { 'aliquot_tag': 'ALQ_3fc4d5c7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00418.MethArray.Green.T C3L-00418 CCRCC Methylation Array tumor CPT0006630009 202178770008_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 8ec5886e-540b-4c06-9d6e-18cab5bd7a91 1b8b51a4f9e29580ca66c78476e50583 { 'aliquot_tag': 'ALQ_93324b9e', 'gdc_sample_type': 'Primary Tumor' } @@ -2209,10 +2648,10 @@ C3L-00418.RNA-Seq.chimeric.A.hg38 C3L-00418 CCRCC RNA-Seq tissue_normal CPT00067 C3L-00418.RNA-Seq.chimeric.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 a006a822-9537-4baa-af94-e7c318150867.rna_seq.chimeric.gdc_realn.bam 66170138 BAM chimeric harmonized CPTAC3 19813f2e-0c87-4fca-8a09-a3be000dd7d5 bf07ba9a201db96e0de34b1e09dd9b34 { 'aliquot_tag': 'ALQ_38d560f', 'gdc_sample_type': 'Primary Tumor' } C3L-00418.RNA-Seq.genomic.A.hg38 C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 d238c106-26c3-475a-af64-62bc29b012cc.rna_seq.genomic.gdc_realn.bam 8333248725 BAM genomic harmonized CPTAC3 cfac19df-712a-48d6-b5ff-85efe0f53ef2 bad1877ca134a2ff97f257681b21f577 { 'aliquot_tag': 'ALQ_c8d185aa', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00418.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 a006a822-9537-4baa-af94-e7c318150867.rna_seq.genomic.gdc_realn.bam 6986256136 BAM genomic harmonized CPTAC3 24e959fe-5b8d-49e2-a105-d3b23452835b 6ad12e0f5a99f92e0bc0ac42c7a2ec87 { 'aliquot_tag': 'ALQ_38d560f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00418.RNA-Seq.R1_L004.T C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATTCCT_S14_L004_R1_001.fastq.gz 3223751307 FASTQ R1_L004 unaligned CPTAC3 b67fdb10-3928-4421-894e-628861348b6c f01fe22ecf1155623af3c3f117c9bd01 { 'aliquot_tag': 'ALQ_38d560f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00418.RNA-Seq.R1_L007.A C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTTTCG_S36_L007_R1_001.fastq.gz 4038425068 FASTQ R1_L007 unaligned CPTAC3 e75e4811-3a6a-4467-a0d1-a0282b439dc1 ea76d279b70687eb7711ac703ac26975 { 'aliquot_tag': 'ALQ_c8d185aa', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00418.RNA-Seq.R2_L004.T C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATTCCT_S14_L004_R2_001.fastq.gz 3402799451 FASTQ R2_L004 unaligned CPTAC3 a3a77dde-7a40-43fa-b991-10fa842d7115 aaf6b0054d2da887bdcef86bd0c1205c { 'aliquot_tag': 'ALQ_38d560f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00418.RNA-Seq.R2_L007.A C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTTTCG_S36_L007_R2_001.fastq.gz 4475052648 FASTQ R2_L007 unaligned CPTAC3 aeb417bd-16a8-4c0b-85ad-7b361d4a701f bddd330f3c6e36078e79b9451201a657 { 'aliquot_tag': 'ALQ_c8d185aa', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00418.RNA-Seq.R1_L004.T C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATTCCT_S14_L004_R1_001.fastq.gz 3223751307 FASTQ R1_L004 unaligned CPTAC3 b67fdb10-3928-4421-894e-628861348b6c f01fe22ecf1155623af3c3f117c9bd01 { 'aliquot_tag': 'ALQ_38d560f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00418.RNA-Seq.R1_L007.A C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTTTCG_S36_L007_R1_001.fastq.gz 4038425068 FASTQ R1_L007 unaligned CPTAC3 e75e4811-3a6a-4467-a0d1-a0282b439dc1 ea76d279b70687eb7711ac703ac26975 { 'aliquot_tag': 'ALQ_c8d185aa', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00418.RNA-Seq.R2_L004.T C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATTCCT_S14_L004_R2_001.fastq.gz 3402799451 FASTQ R2_L004 unaligned CPTAC3 a3a77dde-7a40-43fa-b991-10fa842d7115 aaf6b0054d2da887bdcef86bd0c1205c { 'aliquot_tag': 'ALQ_38d560f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00418.RNA-Seq.R2_L007.A C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 180313_UNC32-K00270_0085_BHT2MGBBXX_GTTTCG_S36_L007_R2_001.fastq.gz 4475052648 FASTQ R2_L007 unaligned CPTAC3 aeb417bd-16a8-4c0b-85ad-7b361d4a701f bddd330f3c6e36078e79b9451201a657 { 'aliquot_tag': 'ALQ_c8d185aa', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-00418.RNA-Seq.transcriptome.A.hg38 C3L-00418 CCRCC RNA-Seq tissue_normal CPT0006730006 d238c106-26c3-475a-af64-62bc29b012cc.rna_seq.transcriptome.gdc_realn.bam 9392721163 BAM transcriptome harmonized CPTAC3 d66c7add-6e8a-430a-bdcc-408e3d211a56 3baf094bf02c2d082c957e031a377a01 { 'aliquot_tag': 'ALQ_c8d185aa', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00418.RNA-Seq.transcriptome.T.hg38 C3L-00418 CCRCC RNA-Seq tumor CPT0006630006 a006a822-9537-4baa-af94-e7c318150867.rna_seq.transcriptome.gdc_realn.bam 9616156958 BAM transcriptome harmonized CPTAC3 7b56318d-01cb-462a-a98e-43a8794d2782 90516e740bd5d8c591f4df44370c7935 { 'aliquot_tag': 'ALQ_38d560f', 'gdc_sample_type': 'Primary Tumor' } C3L-00418.WGS.A C3L-00418 CCRCC WGS tissue_normal CPT0006730009 CPT0006730009.WholeGenome.RP-1303.bam 50879281885 BAM aligned CPTAC3 08697189-84ba-4286-aab4-91ece3a64da1 fcb000ac2f6b8a92b7c358bdaf69b91b { 'aliquot_tag': 'ALQ_586e983b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2237,12 +2676,12 @@ C3L-00422.miRNA-Seq.T C3L-00422 LUAD miRNA-Seq tumor CPT0082850007 181012_UNC32- C3L-00422.miRNA-Seq.T.hg38 C3L-00422 LUAD miRNA-Seq tumor CPT0082850007 56141fbf-9f28-49f5-be3b-4b85cabcca1e_mirnaseq_gdc_realn.bam 248304381 BAM harmonized CPTAC3 78cb47f4-8e43-4cc9-a66b-ed24982c1af0 5211a43833c1fe9ea4fec5fd3c577d73 { 'aliquot_tag': 'ALQ_e66acdef', 'gdc_sample_type': 'Primary Tumor' } C3L-00422.RNA-Seq.chimeric.A.hg38 C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 df1b9a53-dd03-410d-a2df-2c19126448de.rna_seq.chimeric.gdc_realn.bam 106898647 BAM chimeric harmonized CPTAC3 41edd814-dab1-4bd4-a187-b0701664b52f 48f0b0373afd516ba9a7c8959eef66a5 { 'aliquot_tag': 'ALQ_549d1078', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00422.RNA-Seq.chimeric.T.hg38 C3L-00422 LUAD RNA-Seq tumor CPT0082850007 55d85ac1-210a-4d6e-9ffc-f07e42456dcd.rna_seq.chimeric.gdc_realn.bam 51467745 BAM chimeric harmonized CPTAC3 696b9a53-6482-4e05-84e9-74312c0bcbfc 3d5933c901bc5d6c9c9a7925e7530ced { 'aliquot_tag': 'ALQ_e66acdef', 'gdc_sample_type': 'Primary Tumor' } -C3L-00422.RNA-Seq.genomic.A.hg38 C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 df1b9a53-dd03-410d-a2df-2c19126448de.rna_seq.genomic.gdc_realn.bam 8494366100 BAM genomic harmonized CPTAC3 cd081f16-d784-401f-9081-21f7606a0d12 944db3dec650d2618ce701bc95f65b37 { 'aliquot_tag': 'ALQ_549d1078', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00422.RNA-Seq.genomic.T.hg38 C3L-00422 LUAD RNA-Seq tumor CPT0082850007 55d85ac1-210a-4d6e-9ffc-f07e42456dcd.rna_seq.genomic.gdc_realn.bam 10117344163 BAM genomic harmonized CPTAC3 cd7b7447-91ec-4e99-bc3a-0d92fe98fea2 6da68742e0601d49268f9533a8edea87 { 'aliquot_tag': 'ALQ_e66acdef', 'gdc_sample_type': 'Primary Tumor' } -C3L-00422.RNA-Seq.R1_L003.T C3L-00422 LUAD RNA-Seq tumor CPT0082850007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3939767531 FASTQ R1_L003 unaligned CPTAC3 2e2c1c3d-c88d-4da0-831b-64c75634c028 0f020142ccc60cac81885eed3aceef62 { 'aliquot_tag': 'ALQ_e66acdef', 'gdc_sample_type': 'Primary Tumor' } -C3L-00422.RNA-Seq.R1_L005.A C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L005_R1_001.fastq.gz 4141870363 FASTQ R1_L005 unaligned CPTAC3 b30ea0f2-faf1-4078-b0cd-40ed56bb3a94 403b72634b293f4334654a163ac61931 { 'aliquot_tag': 'ALQ_549d1078', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00422.RNA-Seq.R2_L003.T C3L-00422 LUAD RNA-Seq tumor CPT0082850007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 4292587036 FASTQ R2_L003 unaligned CPTAC3 ff0c14f2-d588-418c-aee7-cde1c2d0626d 895c75a3c93cf973581b6ede2d7a2b70 { 'aliquot_tag': 'ALQ_e66acdef', 'gdc_sample_type': 'Primary Tumor' } -C3L-00422.RNA-Seq.R2_L005.A C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L005_R2_001.fastq.gz 4602244724 FASTQ R2_L005 unaligned CPTAC3 689d2a3b-e398-4784-99c8-313b41a8a86d ca7949e245de4ab1dc992694fa82100c { 'aliquot_tag': 'ALQ_549d1078', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00422.RNA-Seq.genomic.A.hg38 C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 df1b9a53-dd03-410d-a2df-2c19126448de.rna_seq.genomic.gdc_realn.bam 8494366100 BAM genomic harmonized CPTAC3 6d849088-933c-4df8-9c07-556555ace5d6 944db3dec650d2618ce701bc95f65b37 { 'aliquot_tag': 'ALQ_549d1078', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00422.RNA-Seq.genomic.T.hg38 C3L-00422 LUAD RNA-Seq tumor CPT0082850007 55d85ac1-210a-4d6e-9ffc-f07e42456dcd.rna_seq.genomic.gdc_realn.bam 10117344163 BAM genomic harmonized CPTAC3 35c4a4ad-40de-4345-b26b-cfbccbca07ae 6da68742e0601d49268f9533a8edea87 { 'aliquot_tag': 'ALQ_e66acdef', 'gdc_sample_type': 'Primary Tumor' } +C3L-00422.RNA-Seq.R1_L003.T C3L-00422 LUAD RNA-Seq tumor CPT0082850007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3939767531 FASTQ R1_L003 unaligned CPTAC3 2e2c1c3d-c88d-4da0-831b-64c75634c028 0f020142ccc60cac81885eed3aceef62 { 'aliquot_tag': 'ALQ_e66acdef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00422.RNA-Seq.R1_L005.A C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L005_R1_001.fastq.gz 4141870363 FASTQ R1_L005 unaligned CPTAC3 b30ea0f2-faf1-4078-b0cd-40ed56bb3a94 403b72634b293f4334654a163ac61931 { 'aliquot_tag': 'ALQ_549d1078', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00422.RNA-Seq.R2_L003.T C3L-00422 LUAD RNA-Seq tumor CPT0082850007 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 4292587036 FASTQ R2_L003 unaligned CPTAC3 ff0c14f2-d588-418c-aee7-cde1c2d0626d 895c75a3c93cf973581b6ede2d7a2b70 { 'aliquot_tag': 'ALQ_e66acdef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00422.RNA-Seq.R2_L005.A C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L005_R2_001.fastq.gz 4602244724 FASTQ R2_L005 unaligned CPTAC3 689d2a3b-e398-4784-99c8-313b41a8a86d ca7949e245de4ab1dc992694fa82100c { 'aliquot_tag': 'ALQ_549d1078', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-00422.RNA-Seq.transcriptome.A.hg38 C3L-00422 LUAD RNA-Seq tissue_normal CPT0082890006 df1b9a53-dd03-410d-a2df-2c19126448de.rna_seq.transcriptome.gdc_realn.bam 10540194402 BAM transcriptome harmonized CPTAC3 3553d147-84de-4d9b-a5b9-4f2ebacec1ea 377e4115ac2d81dd360b90194f3ffe74 { 'aliquot_tag': 'ALQ_549d1078', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00422.RNA-Seq.transcriptome.T.hg38 C3L-00422 LUAD RNA-Seq tumor CPT0082850007 55d85ac1-210a-4d6e-9ffc-f07e42456dcd.rna_seq.transcriptome.gdc_realn.bam 10750414035 BAM transcriptome harmonized CPTAC3 3c0fef25-cd43-41b5-aeaa-9d4a10efdee0 6c38f046bd7e392d43c77f631addfa7f { 'aliquot_tag': 'ALQ_e66acdef', 'gdc_sample_type': 'Primary Tumor' } C3L-00422.WGS.A C3L-00422 LUAD WGS tissue_normal CPT0082890009 CPT0082890009.WholeGenome.RP-1303.bam 61601457533 BAM aligned CPTAC3 f421f40a-4209-4a54-b26a-e6f1c1cbe562 401c366c6e58188b1a4189376f5a56a5 { 'aliquot_tag': 'ALQ_c4220de9', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2261,11 +2700,11 @@ C3L-00424.MethArray.Green.T C3L-00424 GBM Methylation Array tumor CPT0011630007 C3L-00424.MethArray.Red.T C3L-00424 GBM Methylation Array tumor CPT0011630007 202163550115_R05C01_Red.idat 13676230 IDAT Red NA CPTAC3 08dbc76b-d208-4987-8b2d-3a63f58d8005 80024e117924bb98108152d001163273 { 'aliquot_tag': 'ALQ_7d875889', 'gdc_sample_type': 'Primary Tumor' } C3L-00424.miRNA-Seq.T C3L-00424 GBM miRNA-Seq tumor CPT0011630010 181012_UNC32-K00270_0124_AH223CBBXY_CGTACG_S42_L005_R1_001.unaln.bam 193222319 BAM unaligned CPTAC3 c454fe71-cc63-4e8d-8aad-3a944a7a48a3 ae41927f54d4a132599933d4c939a29e { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor' } C3L-00424.miRNA-Seq.T.hg38 C3L-00424 GBM miRNA-Seq tumor CPT0011630010 9c541b07-3b67-4dae-b53f-f93ce9d9b291_mirnaseq_gdc_realn.bam 212874119 BAM harmonized CPTAC3 a824ca32-83ab-4c7e-bc6c-657dfb3d5b37 1c03eed78d61f4ef67e927c36a3e42c3 { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00424.RNA-Seq.chimeric.T.hg38 C3L-00424 GBM RNA-Seq tumor CPT0011630010 8c517eeb-2c7a-4ffb-a94d-c662e6d9a76d.rna_seq.chimeric.gdc_realn.bam 90383755 BAM chimeric harmonized CPTAC3 ab910a78-cc9c-4d16-ab07-c814f7ddee82 e578e01e041cd3837f892b4ace70291e { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00424.RNA-Seq.genomic.T.hg38 C3L-00424 GBM RNA-Seq tumor CPT0011630010 8c517eeb-2c7a-4ffb-a94d-c662e6d9a76d.rna_seq.genomic.gdc_realn.bam 6780010506 BAM genomic harmonized CPTAC3 7bf91a44-8d05-4256-84e6-6b613290dbf4 5a2f96e57910cf67d6cb51f94ce0f46f { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00424.RNA-Seq.R1_L007.T C3L-00424 GBM RNA-Seq tumor CPT0011630010 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L007_R1_001.fastq.gz 3270540906 FASTQ R1_L007 unaligned CPTAC3 cab0cc6e-c6f3-469a-8753-fe98accd0ac0 e911536c83e485f4c271ef9eae85af02 { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00424.RNA-Seq.R2_L007.T C3L-00424 GBM RNA-Seq tumor CPT0011630010 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L007_R2_001.fastq.gz 3504235058 FASTQ R2_L007 unaligned CPTAC3 b7457e33-86b2-4f72-b0b0-2bc2740d92a7 102348196716bed1b04cf83ce63878e0 { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00424.RNA-Seq.transcriptome.T.hg38 C3L-00424 GBM RNA-Seq tumor CPT0011630010 8c517eeb-2c7a-4ffb-a94d-c662e6d9a76d.rna_seq.transcriptome.gdc_realn.bam 6739696532 BAM transcriptome harmonized CPTAC3 0ef63a06-eb90-4843-bd5d-e53bac975e39 46065c8fc9d54614df015b85817ba1e6 { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor' } +C3L-00424.RNA-Seq.chimeric.T.hg38 C3L-00424 GBM RNA-Seq tumor CPT0011630010 8a3c6edc-7b93-44fa-a3bb-6fac1aa3510a.rna_seq.chimeric.gdc_realn.bam 90362092 BAM chimeric harmonized CPTAC3 b11bc027-5cda-475b-9c82-cd03ff76a362 b21778ae2aec830ae747bc376fa7d38e { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor' } +C3L-00424.RNA-Seq.genomic.T.hg38 C3L-00424 GBM RNA-Seq tumor CPT0011630010 8a3c6edc-7b93-44fa-a3bb-6fac1aa3510a.rna_seq.genomic.gdc_realn.bam 6781046126 BAM genomic harmonized CPTAC3 4911995d-399c-4910-bcec-06b989111717 d03dfb0a1d313f68ad3a64a7edc42822 { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor' } +C3L-00424.RNA-Seq.R1_L007.T C3L-00424 GBM RNA-Seq tumor CPT0011630010 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L007_R1_001.fastq.gz 3270540906 FASTQ R1_L007 unaligned CPTAC3 cab0cc6e-c6f3-469a-8753-fe98accd0ac0 e911536c83e485f4c271ef9eae85af02 { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00424.RNA-Seq.R2_L007.T C3L-00424 GBM RNA-Seq tumor CPT0011630010 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L007_R2_001.fastq.gz 3504235058 FASTQ R2_L007 unaligned CPTAC3 b7457e33-86b2-4f72-b0b0-2bc2740d92a7 102348196716bed1b04cf83ce63878e0 { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-00424.RNA-Seq.transcriptome.T.hg38 C3L-00424 GBM RNA-Seq tumor CPT0011630010 8a3c6edc-7b93-44fa-a3bb-6fac1aa3510a.rna_seq.transcriptome.gdc_realn.bam 7716201428 BAM transcriptome harmonized CPTAC3 9ce3ea86-f643-47a1-a6bd-abaa628b0615 63a93535a0a411980ad75225eca542ce { 'aliquot_tag': 'ALQ_faf8fc6b', 'gdc_sample_type': 'Primary Tumor' } C3L-00424.WGS.N C3L-00424 GBM WGS blood_normal CPT0012470002 CPT0012470002.WholeGenome.RP-1303.bam 72731613088 BAM aligned CPTAC3 0e71c6fc-f9ba-4cd0-af5b-6c0b804af71c c5605b0ed5147b94491098b48301e70d { 'aliquot_tag': 'ALQ_844db150', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00424.WGS.N.hg38 C3L-00424 GBM WGS blood_normal CPT0012470002 ab02af11-b8e9-479f-9bf0-1a422709018b_gdc_realn.bam 108115628265 BAM harmonized CPTAC3 6c0a76f1-62b3-4989-b052-d7c1b998d3b5 eb8b428b2c6e8c373ad33b405c50bbb4 { 'aliquot_tag': 'ALQ_844db150', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00424.WGS.T C3L-00424 GBM WGS tumor CPT0011630007 CPT0011630007.WholeGenome.RP-1303.bam 65646379929 BAM aligned CPTAC3 385ec886-88fb-4e70-8a87-d0ab926137cd 030c4e985b8010689e55a43c78d6c7c9 { 'aliquot_tag': 'ALQ_7d875889', 'gdc_sample_type': 'Primary Tumor' } @@ -2278,11 +2717,11 @@ C3L-00429.MethArray.Green.T C3L-00429 GBM Methylation Array tumor CPT0011840007 C3L-00429.MethArray.Red.T C3L-00429 GBM Methylation Array tumor CPT0011840007 202184990013_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 2ed6597f-fa92-4b03-aafc-a3bf786ef73a a814308fb37aea1f67daa26d99e607fb { 'aliquot_tag': 'ALQ_f5ade5e9', 'gdc_sample_type': 'Primary Tumor' } C3L-00429.miRNA-Seq.T C3L-00429 GBM miRNA-Seq tumor CPT0011840014 180924_UNC31-K00269_0154_AHWTMLBBXX_CAGGCG_S38_L002_R1_001.unaln.bam 261701263 BAM unaligned CPTAC3 ad0fa403-d918-4641-bc0b-75433cfe2c96 02355d2c1b8bb85858dd76e6f9b316b4 { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor' } C3L-00429.miRNA-Seq.T.hg38 C3L-00429 GBM miRNA-Seq tumor CPT0011840014 221377b4-e095-47ec-a4a2-2ee5bb1c8124_mirnaseq_gdc_realn.bam 294727531 BAM harmonized CPTAC3 c7f09159-f5de-47d6-b21b-857391e8e4db dd3c14ee0509c901ef2a34c579942d82 { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor' } -C3L-00429.RNA-Seq.chimeric.T.hg38 C3L-00429 GBM RNA-Seq tumor CPT0011840014 9aac269b-4901-4bb7-9e79-7930d04568c9.rna_seq.chimeric.gdc_realn.bam 113957627 BAM chimeric harmonized CPTAC3 bfb68b85-b14b-478f-aa49-fe38ee625110 2cd326952417ed9b3c01926d26ef610a { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor' } -C3L-00429.RNA-Seq.genomic.T.hg38 C3L-00429 GBM RNA-Seq tumor CPT0011840014 9aac269b-4901-4bb7-9e79-7930d04568c9.rna_seq.genomic.gdc_realn.bam 7412078773 BAM genomic harmonized CPTAC3 b5811833-d5f9-4410-871f-d2e9c736d198 bbb1e02b79703f8b7a66571d71dd0582 { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor' } -C3L-00429.RNA-Seq.R1_L007.T C3L-00429 GBM RNA-Seq tumor CPT0011840014 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L007_R1_001.fastq.gz 3781352130 FASTQ R1_L007 unaligned CPTAC3 c8aea007-296c-4c5f-9a05-f37a17f71fb7 a55b7a3f6845283bdcb9d794e63f998e { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor' } -C3L-00429.RNA-Seq.R2_L007.T C3L-00429 GBM RNA-Seq tumor CPT0011840014 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L007_R2_001.fastq.gz 4057092623 FASTQ R2_L007 unaligned CPTAC3 174b78e2-8f90-4bd3-b3e6-33e1ac6c973f 133333741cae1077d3f3d3b89fb00ce6 { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor' } -C3L-00429.RNA-Seq.transcriptome.T.hg38 C3L-00429 GBM RNA-Seq tumor CPT0011840014 9aac269b-4901-4bb7-9e79-7930d04568c9.rna_seq.transcriptome.gdc_realn.bam 6730771810 BAM transcriptome harmonized CPTAC3 be20b3b7-0a4e-41e9-bfc4-16b397f01eb5 18bd3533128526d62bccd50ebb6c7588 { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor' } +C3L-00429.RNA-Seq.chimeric.T.hg38 C3L-00429 GBM RNA-Seq tumor CPT0011840014 3c1c535e-3046-4595-ac8b-370435eab9eb.rna_seq.chimeric.gdc_realn.bam 113932743 BAM chimeric harmonized CPTAC3 a43ab35e-375b-4bc5-9ab4-4e88a1e3e1e9 f7fd58a2c137714f5cd1dfdcf2c4ca09 { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor' } +C3L-00429.RNA-Seq.genomic.T.hg38 C3L-00429 GBM RNA-Seq tumor CPT0011840014 3c1c535e-3046-4595-ac8b-370435eab9eb.rna_seq.genomic.gdc_realn.bam 7412791587 BAM genomic harmonized CPTAC3 42135463-ca15-472a-bcc9-ce998e2cc38b af18036efe252bdfd364266fc6f26e66 { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor' } +C3L-00429.RNA-Seq.R1_L007.T C3L-00429 GBM RNA-Seq tumor CPT0011840014 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L007_R1_001.fastq.gz 3781352130 FASTQ R1_L007 unaligned CPTAC3 c8aea007-296c-4c5f-9a05-f37a17f71fb7 a55b7a3f6845283bdcb9d794e63f998e { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00429.RNA-Seq.R2_L007.T C3L-00429 GBM RNA-Seq tumor CPT0011840014 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L007_R2_001.fastq.gz 4057092623 FASTQ R2_L007 unaligned CPTAC3 174b78e2-8f90-4bd3-b3e6-33e1ac6c973f 133333741cae1077d3f3d3b89fb00ce6 { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-00429.RNA-Seq.transcriptome.T.hg38 C3L-00429 GBM RNA-Seq tumor CPT0011840014 3c1c535e-3046-4595-ac8b-370435eab9eb.rna_seq.transcriptome.gdc_realn.bam 7735620846 BAM transcriptome harmonized CPTAC3 ed7a2788-7a06-4a34-b916-de005aad27c3 7326e3c57b1577cf1f2fe0706be3be27 { 'aliquot_tag': 'ALQ_75bf8512', 'gdc_sample_type': 'Primary Tumor' } C3L-00429.WGS.N C3L-00429 GBM WGS blood_normal CPT0012480002 CPT0012480002.WholeGenome.RP-1303.bam 72583138461 BAM aligned CPTAC3 2cf6e7bd-dd2f-4e7c-8c48-93c80e794157 cb08b85f3b6eb3e4b0be40e84513e955 { 'aliquot_tag': 'ALQ_61d2681', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00429.WGS.N.hg38 C3L-00429 GBM WGS blood_normal CPT0012480002 c4fd9692-30a3-4f34-a8ae-8f320c4a0050_gdc_realn.bam 108275397437 BAM harmonized CPTAC3 88056b8b-09dd-4be2-871b-1c23ea05c0cf 370169ae66e0a9f9c327eeb7a2094ff6 { 'aliquot_tag': 'ALQ_61d2681', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00429.WGS.T C3L-00429 GBM WGS tumor CPT0011840007 CPT0011840007.WholeGenome.RP-1303.bam 61842546792 BAM aligned CPTAC3 68b9136d-9776-4b1d-b340-794cd672b087 4c8b9db9c439dac1660fd86dc8c08a7b { 'aliquot_tag': 'ALQ_f5ade5e9', 'gdc_sample_type': 'Primary Tumor' } @@ -2299,16 +2738,16 @@ C3L-00444.miRNA-Seq.A C3L-00444 LUAD miRNA-Seq tissue_normal CPT0130570009 19013 C3L-00444.miRNA-Seq.A.hg38 C3L-00444 LUAD miRNA-Seq tissue_normal CPT0130570009 ffab4bae-4ef2-4832-a194-52bef09b380c_mirnaseq_gdc_realn.bam 282031841 BAM harmonized CPTAC3 302b6318-7bfb-4c09-a0d3-a3833790c81c 8db076b9041f6893dd5e0ec2d5883709 { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00444.miRNA-Seq.T C3L-00444 LUAD miRNA-Seq tumor CPT0130600009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGGAAT_S37_L007_R1_001.unaln.bam 238012107 BAM unaligned CPTAC3 4b5495c1-01a4-4503-a68d-949f4832688e ef6d9d995ec3ad1d02b92b7ec71fe3a9 { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor' } C3L-00444.miRNA-Seq.T.hg38 C3L-00444 LUAD miRNA-Seq tumor CPT0130600009 3bef9438-f83c-451b-be66-749023f11e7a_mirnaseq_gdc_realn.bam 263817728 BAM harmonized CPTAC3 84c65ec5-a8bd-417b-ad23-9f456cad5b34 d6260a651892eee55ea6ed0da96e9e41 { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00444.RNA-Seq.chimeric.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 0f360083-a575-47f7-9dac-e274f78d394f.rna_seq.chimeric.gdc_realn.bam 33768518 BAM chimeric harmonized CPTAC3 e7fff53a-0a35-4c4c-b791-bc29ff3ff947 b120d9154c2341cd1f730509b3cf8b77 { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00444.RNA-Seq.chimeric.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 a1a87051-6900-448e-a09e-67faf646d27e.rna_seq.chimeric.gdc_realn.bam 46542342 BAM chimeric harmonized CPTAC3 caeb5eb4-525e-425f-9630-22ea6009bb65 d845d139d0c048bc071254abffb8fd11 { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00444.RNA-Seq.genomic.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 0f360083-a575-47f7-9dac-e274f78d394f.rna_seq.genomic.gdc_realn.bam 7764925123 BAM genomic harmonized CPTAC3 2bd72ff4-1872-4717-b241-33f8b9b73a74 571005f7e11836f1a07c51c80921d85c { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00444.RNA-Seq.genomic.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 a1a87051-6900-448e-a09e-67faf646d27e.rna_seq.genomic.gdc_realn.bam 9299851812 BAM genomic harmonized CPTAC3 d266ca40-83db-425a-88c9-7c5665dc381e 38e9fd7784233c8e634b3d1f7e25cf98 { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00444.RNA-Seq.R1_L002.A C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L002_R1_001.fastq.gz 3670326581 FASTQ R1_L002 unaligned CPTAC3 331f7d00-b768-43d2-98ed-aa61ed897322 48eeecab45b4bf293ab6c531e71ba33d { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00444.RNA-Seq.R1_L004.T C3L-00444 LUAD RNA-Seq tumor CPT0130600009 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTCAA_S13_L004_R1_001.fastq.gz 4036401107 FASTQ R1_L004 unaligned CPTAC3 b6490610-1ed9-4419-ba29-bf212c549bf2 a03be3480e50456a3dbf1334031e5383 { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00444.RNA-Seq.R2_L002.A C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L002_R2_001.fastq.gz 3948621402 FASTQ R2_L002 unaligned CPTAC3 155744ac-8c8c-4c44-bf98-dad598363c9e 204626595559b98a908c723dc7e05a2f { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00444.RNA-Seq.R2_L004.T C3L-00444 LUAD RNA-Seq tumor CPT0130600009 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTCAA_S13_L004_R2_001.fastq.gz 4421338294 FASTQ R2_L004 unaligned CPTAC3 1ac9bf23-6370-44fd-8861-57ccb30bb6d0 d63287897bdb5f08c7454ee02f12670c { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00444.RNA-Seq.transcriptome.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 0f360083-a575-47f7-9dac-e274f78d394f.rna_seq.transcriptome.gdc_realn.bam 8427868401 BAM transcriptome harmonized CPTAC3 ff962033-5043-40c0-b1d1-73c56a47e674 fced8e7110a6e98185817fd1e98a0e75 { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00444.RNA-Seq.transcriptome.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 a1a87051-6900-448e-a09e-67faf646d27e.rna_seq.transcriptome.gdc_realn.bam 7964229557 BAM transcriptome harmonized CPTAC3 27cdaef7-210f-4e88-bb90-30f8526433be 865cc11c82671fa692c83ea61ca24cf0 { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00444.RNA-Seq.chimeric.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 e52546e6-d491-490e-b3c7-d23978901128.rna_seq.chimeric.gdc_realn.bam 33747280 BAM chimeric harmonized CPTAC3 39ce72a0-2e18-46c6-a823-50e5a6bf2a03 2bf9f160fa2941fa07b40c6bc4c6dccf { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00444.RNA-Seq.chimeric.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 8eec6d8c-c12d-4944-9b57-92f4dc51c6e8.rna_seq.chimeric.gdc_realn.bam 46533687 BAM chimeric harmonized CPTAC3 453997eb-0ad1-45c5-84d3-fce40cb7c22c c82c1c2f291bf2753e93d8967193fc14 { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00444.RNA-Seq.genomic.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 e52546e6-d491-490e-b3c7-d23978901128.rna_seq.genomic.gdc_realn.bam 7765672002 BAM genomic harmonized CPTAC3 36b34e03-8d9f-4bc3-bbac-04a741ad8073 561be81362e51de649074c5dde1b65a2 { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00444.RNA-Seq.genomic.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 8eec6d8c-c12d-4944-9b57-92f4dc51c6e8.rna_seq.genomic.gdc_realn.bam 9300700164 BAM genomic harmonized CPTAC3 0493f327-f60c-4002-ab36-2a1b4ffbcc92 cfea4be5f51aa732bc32ac827950ea0a { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00444.RNA-Seq.R1_L002.A C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L002_R1_001.fastq.gz 3670326581 FASTQ R1_L002 unaligned CPTAC3 331f7d00-b768-43d2-98ed-aa61ed897322 48eeecab45b4bf293ab6c531e71ba33d { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-00444.RNA-Seq.R1_L004.T C3L-00444 LUAD RNA-Seq tumor CPT0130600009 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTCAA_S13_L004_R1_001.fastq.gz 4036401107 FASTQ R1_L004 unaligned CPTAC3 b6490610-1ed9-4419-ba29-bf212c549bf2 a03be3480e50456a3dbf1334031e5383 { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00444.RNA-Seq.R2_L002.A C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTTCC_S6_L002_R2_001.fastq.gz 3948621402 FASTQ R2_L002 unaligned CPTAC3 155744ac-8c8c-4c44-bf98-dad598363c9e 204626595559b98a908c723dc7e05a2f { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-00444.RNA-Seq.R2_L004.T C3L-00444 LUAD RNA-Seq tumor CPT0130600009 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTCAA_S13_L004_R2_001.fastq.gz 4421338294 FASTQ R2_L004 unaligned CPTAC3 1ac9bf23-6370-44fd-8861-57ccb30bb6d0 d63287897bdb5f08c7454ee02f12670c { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00444.RNA-Seq.transcriptome.A.hg38 C3L-00444 LUAD RNA-Seq tissue_normal CPT0130570009 e52546e6-d491-490e-b3c7-d23978901128.rna_seq.transcriptome.gdc_realn.bam 9595016465 BAM transcriptome harmonized CPTAC3 0bf65306-7851-4d30-a143-1aebd393f317 e9679239832bb956a159f6f9c98c7a3d { 'aliquot_tag': 'ALQ_1a02b96a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00444.RNA-Seq.transcriptome.T.hg38 C3L-00444 LUAD RNA-Seq tumor CPT0130600009 8eec6d8c-c12d-4944-9b57-92f4dc51c6e8.rna_seq.transcriptome.gdc_realn.bam 8968804196 BAM transcriptome harmonized CPTAC3 97224e73-39e0-40a7-88c3-33351cbcf878 ed460c9858e8e340962eac9be8f6859a { 'aliquot_tag': 'ALQ_2eb617d4', 'gdc_sample_type': 'Primary Tumor' } C3L-00444.WGS.A C3L-00444 LUAD WGS tissue_normal CPT0130570006 CPT0130570006.WholeGenome.RP-1303.bam 55210446209 BAM aligned CPTAC3 79b224e0-a014-4040-828c-68b58c672ce2 353503fe828c36b6fce8873891facd19 { 'aliquot_tag': 'ALQ_8abda4fb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00444.WGS.A.hg38 C3L-00444 LUAD WGS tissue_normal CPT0130570006 207dfc06-0684-4fb5-b41e-b086e29ed031_wgs_gdc_realn.bam 80353184323 BAM harmonized CPTAC3 52849fba-9ad9-4809-b5e3-7ecd13c8fe47 4ef1bb60cacdc2aec936d630613ea62d { 'aliquot_tag': 'ALQ_8abda4fb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00444.WGS.N C3L-00444 LUAD WGS blood_normal CPT0130670001 CPT0130670001.WholeGenome.RP-1303.bam 61867552537 BAM aligned CPTAC3 f23e66f5-b0e5-401e-aa9a-bca9890eb875 a2a140affea4b96187f0608077681adc { 'aliquot_tag': 'ALQ_924d43f6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -2331,12 +2770,12 @@ C3L-00445.miRNA-Seq.T C3L-00445 LSCC miRNA-Seq tumor CPT0130410006 181219_UNC31- C3L-00445.miRNA-Seq.T.hg38 C3L-00445 LSCC miRNA-Seq tumor CPT0130410006 525aa0a6-4323-442d-bf53-fd0458e5c174_mirnaseq_gdc_realn.bam 277882210 BAM harmonized CPTAC3 3ef8a762-8800-432f-aeb8-92988f49004d c2be7af2352f95f2aa8eaf72c3b7e1a1 { 'aliquot_tag': 'ALQ_cea182fe', 'gdc_sample_type': 'Primary Tumor' } C3L-00445.RNA-Seq.chimeric.A.hg38 C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 78c7671c-ee86-40bc-93ac-c28812fbb713.rna_seq.chimeric.gdc_realn.bam 28371098 BAM chimeric harmonized CPTAC3 73fb63cd-84f8-4383-ae88-fe56f730b05e 778b92ebf83c5d74bb823ca022fb4169 { 'aliquot_tag': 'ALQ_f63999fa', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00445.RNA-Seq.chimeric.T.hg38 C3L-00445 LSCC RNA-Seq tumor CPT0130410006 0ab8f315-bca0-43f8-8027-3f8ea94b371c.rna_seq.chimeric.gdc_realn.bam 27998406 BAM chimeric harmonized CPTAC3 5aa38bbf-064c-4b7c-adfb-dc62624315dc 69dc44b3e7995e1d6d8b1a25cd40175d { 'aliquot_tag': 'ALQ_cea182fe', 'gdc_sample_type': 'Primary Tumor' } -C3L-00445.RNA-Seq.genomic.A.hg38 C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 78c7671c-ee86-40bc-93ac-c28812fbb713.rna_seq.genomic.gdc_realn.bam 8828821078 BAM genomic harmonized CPTAC3 559b197f-bae9-40e0-8c1e-8563e139e323 6a4cfe98e93a51c5077c142a4426b634 { 'aliquot_tag': 'ALQ_f63999fa', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00445.RNA-Seq.genomic.T.hg38 C3L-00445 LSCC RNA-Seq tumor CPT0130410006 0ab8f315-bca0-43f8-8027-3f8ea94b371c.rna_seq.genomic.gdc_realn.bam 8054442925 BAM genomic harmonized CPTAC3 e1f800b6-dd26-47f7-aa30-042229887cbe 5e6ecaed670b6779051b3dafa51e7600 { 'aliquot_tag': 'ALQ_cea182fe', 'gdc_sample_type': 'Primary Tumor' } -C3L-00445.RNA-Seq.R1_L001.T C3L-00445 LSCC RNA-Seq tumor CPT0130410006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 3582948269 FASTQ R1_L001 unaligned CPTAC3 fe878db6-3333-4bca-9757-acca87223d7d b533a94727d3bf9727b8415e56f72159 { 'aliquot_tag': 'ALQ_cea182fe', 'gdc_sample_type': 'Primary Tumor' } -C3L-00445.RNA-Seq.R1_L003.A C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 180926_UNC31-K00269_0155_AHWN7WBBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3969350594 FASTQ R1_L003 unaligned CPTAC3 adcf873e-8068-482d-86f6-c45269581947 6e01d754d63841208b1cad9bfc07630e { 'aliquot_tag': 'ALQ_f63999fa', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00445.RNA-Seq.R2_L001.T C3L-00445 LSCC RNA-Seq tumor CPT0130410006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 3993491560 FASTQ R2_L001 unaligned CPTAC3 ce3eb190-137f-44cc-8ee9-5427aa689226 23c7f0c5555ef4c90acc7948756e62e1 { 'aliquot_tag': 'ALQ_cea182fe', 'gdc_sample_type': 'Primary Tumor' } -C3L-00445.RNA-Seq.R2_L003.A C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 180926_UNC31-K00269_0155_AHWN7WBBXX_TTAGGC_S10_L003_R2_001.fastq.gz 4181183944 FASTQ R2_L003 unaligned CPTAC3 a0e1915a-e37d-43c9-9057-a6ceb942130e 982c8009c6024ea1752513ae9c365b73 { 'aliquot_tag': 'ALQ_f63999fa', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00445.RNA-Seq.genomic.A.hg38 C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 78c7671c-ee86-40bc-93ac-c28812fbb713.rna_seq.genomic.gdc_realn.bam 8828821078 BAM genomic harmonized CPTAC3 c9927615-1f3e-4fdd-b6ee-1856de5dc4be 6a4cfe98e93a51c5077c142a4426b634 { 'aliquot_tag': 'ALQ_f63999fa', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00445.RNA-Seq.genomic.T.hg38 C3L-00445 LSCC RNA-Seq tumor CPT0130410006 0ab8f315-bca0-43f8-8027-3f8ea94b371c.rna_seq.genomic.gdc_realn.bam 8054442925 BAM genomic harmonized CPTAC3 a1c9522f-1281-40dc-a1a9-60c74dcebe79 5e6ecaed670b6779051b3dafa51e7600 { 'aliquot_tag': 'ALQ_cea182fe', 'gdc_sample_type': 'Primary Tumor' } +C3L-00445.RNA-Seq.R1_L001.T C3L-00445 LSCC RNA-Seq tumor CPT0130410006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 3582948269 FASTQ R1_L001 unaligned CPTAC3 fe878db6-3333-4bca-9757-acca87223d7d b533a94727d3bf9727b8415e56f72159 { 'aliquot_tag': 'ALQ_cea182fe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00445.RNA-Seq.R1_L003.A C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 180926_UNC31-K00269_0155_AHWN7WBBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3969350594 FASTQ R1_L003 unaligned CPTAC3 adcf873e-8068-482d-86f6-c45269581947 6e01d754d63841208b1cad9bfc07630e { 'aliquot_tag': 'ALQ_f63999fa', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-00445.RNA-Seq.R2_L001.T C3L-00445 LSCC RNA-Seq tumor CPT0130410006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 3993491560 FASTQ R2_L001 unaligned CPTAC3 ce3eb190-137f-44cc-8ee9-5427aa689226 23c7f0c5555ef4c90acc7948756e62e1 { 'aliquot_tag': 'ALQ_cea182fe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00445.RNA-Seq.R2_L003.A C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 180926_UNC31-K00269_0155_AHWN7WBBXX_TTAGGC_S10_L003_R2_001.fastq.gz 4181183944 FASTQ R2_L003 unaligned CPTAC3 a0e1915a-e37d-43c9-9057-a6ceb942130e 982c8009c6024ea1752513ae9c365b73 { 'aliquot_tag': 'ALQ_f63999fa', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3L-00445.RNA-Seq.transcriptome.A.hg38 C3L-00445 LSCC RNA-Seq tissue_normal CPT0130440010 78c7671c-ee86-40bc-93ac-c28812fbb713.rna_seq.transcriptome.gdc_realn.bam 11810084243 BAM transcriptome harmonized CPTAC3 80ee4b0b-7df0-4556-b4f0-26c5afc6beca f972682fe6d259274cff556af2589650 { 'aliquot_tag': 'ALQ_f63999fa', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00445.RNA-Seq.transcriptome.T.hg38 C3L-00445 LSCC RNA-Seq tumor CPT0130410006 0ab8f315-bca0-43f8-8027-3f8ea94b371c.rna_seq.transcriptome.gdc_realn.bam 9801766325 BAM transcriptome harmonized CPTAC3 82b187bc-93d5-4696-8b40-75fe2f72cd8b c9fe25709f872b963e24408a6beba3b9 { 'aliquot_tag': 'ALQ_cea182fe', 'gdc_sample_type': 'Primary Tumor' } C3L-00445.WGS.A C3L-00445 LSCC WGS tissue_normal CPT0130440007 CPT0130440007.WholeGenome.RP-1303.bam 53123947589 BAM aligned CPTAC3 fc9c7dd2-24a7-4dc1-bd5c-4af36ee8fffd e5cc1aacc23be319f5e0a0327e653e7e { 'aliquot_tag': 'ALQ_71463d18', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2359,16 +2798,16 @@ C3L-00446.miRNA-Seq.A C3L-00446 LUAD miRNA-Seq tissue_normal CPT0129790009 19013 C3L-00446.miRNA-Seq.A.hg38 C3L-00446 LUAD miRNA-Seq tissue_normal CPT0129790009 39f8d9cf-6a27-4a7b-8186-3d3cde93f184_mirnaseq_gdc_realn.bam 251490691 BAM harmonized CPTAC3 f137a364-3997-4b3a-91d9-9856502775c1 5f0f7a44a5477c298d905e1dd062591d { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00446.miRNA-Seq.T C3L-00446 LUAD miRNA-Seq tumor CPT0129030009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTAGAG_S18_L006_R1_001.unaln.bam 173612857 BAM unaligned CPTAC3 68497aea-6170-4e14-9f69-ba138758b38f 71441cd1201245d8f225f42b30de5ffb { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor' } C3L-00446.miRNA-Seq.T.hg38 C3L-00446 LUAD miRNA-Seq tumor CPT0129030009 3d4e48fb-e1d8-4924-807e-e21825aab250_mirnaseq_gdc_realn.bam 190825628 BAM harmonized CPTAC3 5acc5aed-a59b-4989-b650-3a27d9560154 8156e6fbb7749d97ebfd08d783265a41 { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor' } -C3L-00446.RNA-Seq.chimeric.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 4298fc42-8720-4532-abcc-3d2bbd7efc62.rna_seq.chimeric.gdc_realn.bam 398620099 BAM chimeric harmonized CPTAC3 f7b7a0f4-6b6d-4914-a4a0-0436bc7132a0 b7ce651cac7e217faf7f8d69f24d9f06 { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00446.RNA-Seq.chimeric.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 3697970d-3cb0-4a0e-ae1a-2ff964c1a2e8.rna_seq.chimeric.gdc_realn.bam 53930390 BAM chimeric harmonized CPTAC3 693e243f-911a-4178-b82a-53cb1c3e0d16 8b6cccb946049dbd8329f7527a0078cd { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor' } -C3L-00446.RNA-Seq.genomic.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 4298fc42-8720-4532-abcc-3d2bbd7efc62.rna_seq.genomic.gdc_realn.bam 8961200111 BAM genomic harmonized CPTAC3 d2b2471e-4251-4e4c-bd37-57329a921578 a7dc33e3f7e8cba6c6668a1c173336bc { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00446.RNA-Seq.genomic.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 3697970d-3cb0-4a0e-ae1a-2ff964c1a2e8.rna_seq.genomic.gdc_realn.bam 11442575567 BAM genomic harmonized CPTAC3 0f2e8015-f3fb-426a-bf6c-4b133456c2c6 796553ba35fb1f4a794668ad7c208395 { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor' } -C3L-00446.RNA-Seq.R1_L006.T C3L-00446 LUAD RNA-Seq tumor CPT0129030009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTCCGC_S20_L006_R1_001.fastq.gz 5082749836 FASTQ R1_L006 unaligned CPTAC3 6dc12a76-42da-4bb6-a37c-e7b2600633f0 116ffc92ade2da42358c167c56532627 { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor' } -C3L-00446.RNA-Seq.R1_L007.A C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L007_R1_001.fastq.gz 4029820827 FASTQ R1_L007 unaligned CPTAC3 d5219752-cb3f-4079-bef2-b7e0401b1cb9 d929713ddcafdc9a16763fb42dec783d { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00446.RNA-Seq.R2_L006.T C3L-00446 LUAD RNA-Seq tumor CPT0129030009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTCCGC_S20_L006_R2_001.fastq.gz 5819146639 FASTQ R2_L006 unaligned CPTAC3 7c60aa89-72b4-4919-b828-99f4a5a033e2 1f43bebe62f95497f6d1c268482b6473 { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor' } -C3L-00446.RNA-Seq.R2_L007.A C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L007_R2_001.fastq.gz 4205733924 FASTQ R2_L007 unaligned CPTAC3 e720a590-dbd9-4648-9c4c-80155cfecff4 4378f03865d8fb92cd7812b4a2f458c3 { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00446.RNA-Seq.transcriptome.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 4298fc42-8720-4532-abcc-3d2bbd7efc62.rna_seq.transcriptome.gdc_realn.bam 7837417012 BAM transcriptome harmonized CPTAC3 6dc61993-c58e-475f-b0a9-ecb0faa2cc95 6f74a46d60b25a5cb34cd80961745a16 { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00446.RNA-Seq.transcriptome.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 3697970d-3cb0-4a0e-ae1a-2ff964c1a2e8.rna_seq.transcriptome.gdc_realn.bam 11522996487 BAM transcriptome harmonized CPTAC3 c5aa6d78-d625-4c2a-b63e-b2af54b16887 41297fe1912ca6a52c2d14afc273e885 { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor' } +C3L-00446.RNA-Seq.chimeric.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 6de456bc-5ef7-4c0c-9c9c-b7e9b38d0ecd.rna_seq.chimeric.gdc_realn.bam 398598616 BAM chimeric harmonized CPTAC3 5bc5b475-e014-40de-b403-3e8c9f711fd0 c80539fba3adcdd1ca5f6e611d18b81a { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00446.RNA-Seq.chimeric.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 e318ead8-bfc1-451d-94c2-7e4211e217d6.rna_seq.chimeric.gdc_realn.bam 53943736 BAM chimeric harmonized CPTAC3 fbe1df05-8c7a-446b-be06-0df7fd0b3054 166f576843c6b8c6b94d545331631885 { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor' } +C3L-00446.RNA-Seq.genomic.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 6de456bc-5ef7-4c0c-9c9c-b7e9b38d0ecd.rna_seq.genomic.gdc_realn.bam 8962548599 BAM genomic harmonized CPTAC3 8ea927fc-f5fb-4264-b33e-12eb0a193dff 431c3b0c45b658dc716097f691a9ef9e { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00446.RNA-Seq.genomic.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 e318ead8-bfc1-451d-94c2-7e4211e217d6.rna_seq.genomic.gdc_realn.bam 11445245281 BAM genomic harmonized CPTAC3 565bb203-0fcb-42e6-bcb9-d9986ee8745b 886bcf45c04dffb6ffadc5eb17cb80bb { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor' } +C3L-00446.RNA-Seq.R1_L006.T C3L-00446 LUAD RNA-Seq tumor CPT0129030009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTCCGC_S20_L006_R1_001.fastq.gz 5082749836 FASTQ R1_L006 unaligned CPTAC3 6dc12a76-42da-4bb6-a37c-e7b2600633f0 116ffc92ade2da42358c167c56532627 { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00446.RNA-Seq.R1_L007.A C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L007_R1_001.fastq.gz 4029820827 FASTQ R1_L007 unaligned CPTAC3 d5219752-cb3f-4079-bef2-b7e0401b1cb9 d929713ddcafdc9a16763fb42dec783d { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-00446.RNA-Seq.R2_L006.T C3L-00446 LUAD RNA-Seq tumor CPT0129030009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTCCGC_S20_L006_R2_001.fastq.gz 5819146639 FASTQ R2_L006 unaligned CPTAC3 7c60aa89-72b4-4919-b828-99f4a5a033e2 1f43bebe62f95497f6d1c268482b6473 { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-00446.RNA-Seq.R2_L007.A C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L007_R2_001.fastq.gz 4205733924 FASTQ R2_L007 unaligned CPTAC3 e720a590-dbd9-4648-9c4c-80155cfecff4 4378f03865d8fb92cd7812b4a2f458c3 { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-00446.RNA-Seq.transcriptome.A.hg38 C3L-00446 LUAD RNA-Seq tissue_normal CPT0129790009 6de456bc-5ef7-4c0c-9c9c-b7e9b38d0ecd.rna_seq.transcriptome.gdc_realn.bam 8836701859 BAM transcriptome harmonized CPTAC3 7e01347b-f720-4ba6-8bc4-d25562f6bebd ea783a8213a35f877ece07ca323c5047 { 'aliquot_tag': 'ALQ_b1c8e34d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00446.RNA-Seq.transcriptome.T.hg38 C3L-00446 LUAD RNA-Seq tumor CPT0129030009 e318ead8-bfc1-451d-94c2-7e4211e217d6.rna_seq.transcriptome.gdc_realn.bam 12910183351 BAM transcriptome harmonized CPTAC3 8ae9c2c3-9bbf-4533-b2f6-a84f6c48b311 2540fab33e80bfe10d1544c3db8a1181 { 'aliquot_tag': 'ALQ_e67dcb54', 'gdc_sample_type': 'Primary Tumor' } C3L-00446.WGS.A C3L-00446 LUAD WGS tissue_normal CPT0129790006 CPT0129790006.WholeGenome.RP-1303.bam 57633000886 BAM aligned CPTAC3 6473b6f8-f5a0-42ef-9443-54414c9b7daf 7e70541d01e8444e758112da4fa60211 { 'aliquot_tag': 'ALQ_2177fedc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00446.WGS.A.hg38 C3L-00446 LUAD WGS tissue_normal CPT0129790006 75048cfb-71f1-4fdf-b78c-aa86369f3619_wgs_gdc_realn.bam 84118607107 BAM harmonized CPTAC3 47fd5108-15bb-4eeb-9810-6a7a9a4ff02b 45eed63bc3a86879422a1a0db5cb4839 { 'aliquot_tag': 'ALQ_2177fedc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00446.WGS.N C3L-00446 LUAD WGS blood_normal CPT0129890002 CPT0129890002.WholeGenome.RP-1303.bam 54829670427 BAM aligned CPTAC3 9b2acfe7-2ce3-452a-a5b2-95a5e3b1d546 c894d5cb1570601c74daabd4c7f7be11 { 'aliquot_tag': 'ALQ_d74c8810', 'gdc_sample_type': 'Blood Derived Normal' } @@ -2397,15 +2836,15 @@ C3L-00447.DUP_881bb7ba.miRNA-Seq.T C3L-00447 CCRCC miRNA-Seq tumor CPT0006910006 C3L-00447.DUP_881bb7ba.miRNA-Seq.T.hg38 C3L-00447 CCRCC miRNA-Seq tumor CPT0006910006 4a4937df-521c-4d92-8bef-ed029f4f5f4a_mirnaseq_gdc_realn.bam 502929455 BAM harmonized CPTAC3 c678e232-a714-4b57-bfd1-1247329c8a8f dd2f98545ca0347d61d5487451cf6b10 { 'aliquot_tag': 'DUP_881bb7ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00447.DUP_881bb7ba.RNA-Seq.chimeric.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 4dd3f950-f0eb-4d2d-b0d1-589bfbb31fd3.rna_seq.chimeric.gdc_realn.bam 74371764 BAM chimeric harmonized CPTAC3 e7ad69ec-c0aa-4312-9b5a-57e99579d4fc d0fc1162bff5ab8e1eea5bb88a97d18c { 'aliquot_tag': 'DUP_881bb7ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00447.DUP_881bb7ba.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 4dd3f950-f0eb-4d2d-b0d1-589bfbb31fd3.rna_seq.genomic.gdc_realn.bam 8344558021 BAM genomic harmonized CPTAC3 76792916-3f4e-457b-a37d-cf8cdafcbb81 d079814d7d83b124d280167183855e6e { 'aliquot_tag': 'DUP_881bb7ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00447.DUP_881bb7ba.RNA-Seq.R1_L002.T C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 200608_UNC31-K00269_0281_AHH5NFBBXY_ACAGGCGC-CTCTGCCT_S7_L002_R1_001.fastq.gz 3933557689 FASTQ R1_L002 unaligned CPTAC3 e11e8977-2f36-41fa-89b5-ce5d4071ef1c 30c85b9af3d32f90ea0b640f216a0ca9 { 'aliquot_tag': 'DUP_881bb7ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00447.DUP_881bb7ba.RNA-Seq.R2_L002.T C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 200608_UNC31-K00269_0281_AHH5NFBBXY_ACAGGCGC-CTCTGCCT_S7_L002_R2_001.fastq.gz 4568321600 FASTQ R2_L002 unaligned CPTAC3 0e933d02-8f5a-4490-af96-56d3d88d7c2f dee9ca9a943eeeca1fea3f1f0517f8bd { 'aliquot_tag': 'DUP_881bb7ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00447.DUP_881bb7ba.RNA-Seq.R1_L002.T C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 200608_UNC31-K00269_0281_AHH5NFBBXY_ACAGGCGC-CTCTGCCT_S7_L002_R1_001.fastq.gz 3933557689 FASTQ R1_L002 unaligned CPTAC3 e11e8977-2f36-41fa-89b5-ce5d4071ef1c 30c85b9af3d32f90ea0b640f216a0ca9 { 'aliquot_tag': 'DUP_881bb7ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3L-00447.DUP_881bb7ba.RNA-Seq.R2_L002.T C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 200608_UNC31-K00269_0281_AHH5NFBBXY_ACAGGCGC-CTCTGCCT_S7_L002_R2_001.fastq.gz 4568321600 FASTQ R2_L002 unaligned CPTAC3 0e933d02-8f5a-4490-af96-56d3d88d7c2f dee9ca9a943eeeca1fea3f1f0517f8bd { 'aliquot_tag': 'DUP_881bb7ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3L-00447.DUP_881bb7ba.RNA-Seq.transcriptome.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006910006 4dd3f950-f0eb-4d2d-b0d1-589bfbb31fd3.rna_seq.transcriptome.gdc_realn.bam 11237389246 BAM transcriptome harmonized CPTAC3 2856e914-5a6c-4757-821a-36c824a825c1 50676ededab49eb09264654043d70f73 { 'aliquot_tag': 'DUP_881bb7ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00447.DUP_f167b80f.miRNA-Seq.T C3L-00447 CCRCC miRNA-Seq tumor CPT0006860006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L002_R1_001.unaln.bam 281773618 BAM unaligned CPTAC3 1517c841-4eeb-4d80-8b70-a6ac61b7fde2 515b6b7f16a0737fd38cb9284f85f7ec { 'aliquot_tag': 'DUP_f167b80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00447.DUP_f167b80f.miRNA-Seq.T.hg38 C3L-00447 CCRCC miRNA-Seq tumor CPT0006860006 f06b2a06-4874-418f-ac56-445c1553c9d2_mirnaseq_gdc_realn.bam 312853517 BAM harmonized CPTAC3 0ececd7e-cc13-4e78-bb59-75bc51439270 9bc772ccc6bba69fd0879c1fc09d97f1 { 'aliquot_tag': 'DUP_f167b80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00447.DUP_f167b80f.RNA-Seq.chimeric.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 737c2d77-e5dc-4dda-8bb3-755e2012b1bc.rna_seq.chimeric.gdc_realn.bam 64438220 BAM chimeric harmonized CPTAC3 52dcc0d3-49ee-4aec-8d32-06f3e4a92f5a 604b0077fb9748662a250c9e5a00e8b0 { 'aliquot_tag': 'DUP_f167b80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00447.DUP_f167b80f.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 737c2d77-e5dc-4dda-8bb3-755e2012b1bc.rna_seq.genomic.gdc_realn.bam 7828047599 BAM genomic harmonized CPTAC3 42c2af11-e10e-42d3-bf27-20821f1ce962 efebd75a51a22d0f7d3f71c2dbd61d0a { 'aliquot_tag': 'DUP_f167b80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00447.DUP_f167b80f.RNA-Seq.R1_L002.T C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 200608_UNC31-K00269_0281_AHH5NFBBXY_CATAGAGT-TGCCACCA_S6_L002_R1_001.fastq.gz 3734743600 FASTQ R1_L002 unaligned CPTAC3 274c496d-765e-4014-aa7a-d298cace23eb 98c2084c5b5c039ac465246c6d97ce6c { 'aliquot_tag': 'DUP_f167b80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00447.DUP_f167b80f.RNA-Seq.R2_L002.T C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 200608_UNC31-K00269_0281_AHH5NFBBXY_CATAGAGT-TGCCACCA_S6_L002_R2_001.fastq.gz 4225260777 FASTQ R2_L002 unaligned CPTAC3 6ca2d9b8-2ef8-4a01-a7a7-c62215ea68fd d68f04908a78bcdf6e6cd51e76578be0 { 'aliquot_tag': 'DUP_f167b80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00447.DUP_f167b80f.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 737c2d77-e5dc-4dda-8bb3-755e2012b1bc.rna_seq.genomic.gdc_realn.bam 7828047599 BAM genomic harmonized CPTAC3 3cc33ac0-ad9e-4d90-b519-9628790e9309 efebd75a51a22d0f7d3f71c2dbd61d0a { 'aliquot_tag': 'DUP_f167b80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00447.DUP_f167b80f.RNA-Seq.R1_L002.T C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 200608_UNC31-K00269_0281_AHH5NFBBXY_CATAGAGT-TGCCACCA_S6_L002_R1_001.fastq.gz 3734743600 FASTQ R1_L002 unaligned CPTAC3 274c496d-765e-4014-aa7a-d298cace23eb 98c2084c5b5c039ac465246c6d97ce6c { 'aliquot_tag': 'DUP_f167b80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3L-00447.DUP_f167b80f.RNA-Seq.R2_L002.T C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 200608_UNC31-K00269_0281_AHH5NFBBXY_CATAGAGT-TGCCACCA_S6_L002_R2_001.fastq.gz 4225260777 FASTQ R2_L002 unaligned CPTAC3 6ca2d9b8-2ef8-4a01-a7a7-c62215ea68fd d68f04908a78bcdf6e6cd51e76578be0 { 'aliquot_tag': 'DUP_f167b80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3L-00447.DUP_f167b80f.RNA-Seq.transcriptome.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006860006 737c2d77-e5dc-4dda-8bb3-755e2012b1bc.rna_seq.transcriptome.gdc_realn.bam 10106412268 BAM transcriptome harmonized CPTAC3 61c431dd-48da-4717-8804-2c8c7578ef35 bd5dcc5c867566e405e7393e51863ffa { 'aliquot_tag': 'DUP_f167b80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00447.MethArray.Green.A C3L-00447 CCRCC Methylation Array tissue_normal CPT0006950014 204930630084_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 be349024-ec31-4e8c-bf5e-1207e8b254ea d16de51045a5a83cd1d3d1c8866f772c { 'aliquot_tag': 'ALQ_8a8e4117', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00447.MethArray.Green.T C3L-00447 CCRCC Methylation Array tumor CPT0006900009 202163550072_R02C01_Grn.idat 13676236 IDAT Green NA CPTAC3 90dcff0b-8ea6-48cc-aa80-468c8d008295 308280c02bf7993326e61bafc9eae6f2 { 'aliquot_tag': 'ALQ_25c4839b', 'gdc_sample_type': 'Primary Tumor' } @@ -2419,10 +2858,10 @@ C3L-00447.RNA-Seq.chimeric.A.hg38 C3L-00447 CCRCC RNA-Seq tissue_normal CPT00069 C3L-00447.RNA-Seq.chimeric.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 7519e7c2-c27f-4da2-9e0a-e091ff1e0136.rna_seq.chimeric.gdc_realn.bam 68008806 BAM chimeric harmonized CPTAC3 390c490d-f090-446c-96ff-36b313532938 66851ec8d5b001479d92074af0ef2487 { 'aliquot_tag': 'ALQ_b57b9e0a', 'gdc_sample_type': 'Primary Tumor' } C3L-00447.RNA-Seq.genomic.A.hg38 C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 b6457ad7-5901-4cc1-8d1f-a42bda073961.rna_seq.genomic.gdc_realn.bam 6208589454 BAM genomic harmonized CPTAC3 6c268e9f-ea29-4d66-976b-a5b54351443f 01ea9ab2a9fd1106fa5fa308ad3106f8 { 'aliquot_tag': 'ALQ_7d9b117a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00447.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 7519e7c2-c27f-4da2-9e0a-e091ff1e0136.rna_seq.genomic.gdc_realn.bam 8040630704 BAM genomic harmonized CPTAC3 f9b4a6ed-4c5c-45d0-9b34-7276c2975cbc ca29289b04c566f99fd743e5318e6abe { 'aliquot_tag': 'ALQ_b57b9e0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00447.RNA-Seq.R1_L004.T C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATCACG_S13_L004_R1_001.fastq.gz 3819481651 FASTQ R1_L004 unaligned CPTAC3 a408e8ca-1132-4cbf-bf67-5c76b012a2b7 2ebd59f8005dc4222e71005d293a9b86 { 'aliquot_tag': 'ALQ_b57b9e0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00447.RNA-Seq.R1_L005.A C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATGTCA_S48_L005_R1_001.fastq.gz 3268525725 FASTQ R1_L005 unaligned CPTAC3 2b47995f-8175-4d08-96ac-f52a5bc41aa5 24f670a190e51197348450229a4015fa { 'aliquot_tag': 'ALQ_7d9b117a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00447.RNA-Seq.R2_L004.T C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATCACG_S13_L004_R2_001.fastq.gz 3892291967 FASTQ R2_L004 unaligned CPTAC3 4690c1e9-6e9e-4f8f-b36a-e88f0fc5eb44 ae8f79377081648b4e22ae70e18f3013 { 'aliquot_tag': 'ALQ_b57b9e0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00447.RNA-Seq.R2_L005.A C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATGTCA_S48_L005_R2_001.fastq.gz 3459761848 FASTQ R2_L005 unaligned CPTAC3 e0807d28-39f2-4c6c-bd40-371a132840a8 87667a71505a8e833e20817dec9110a8 { 'aliquot_tag': 'ALQ_7d9b117a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00447.RNA-Seq.R1_L004.T C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATCACG_S13_L004_R1_001.fastq.gz 3819481651 FASTQ R1_L004 unaligned CPTAC3 a408e8ca-1132-4cbf-bf67-5c76b012a2b7 2ebd59f8005dc4222e71005d293a9b86 { 'aliquot_tag': 'ALQ_b57b9e0a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00447.RNA-Seq.R1_L005.A C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATGTCA_S48_L005_R1_001.fastq.gz 3268525725 FASTQ R1_L005 unaligned CPTAC3 2b47995f-8175-4d08-96ac-f52a5bc41aa5 24f670a190e51197348450229a4015fa { 'aliquot_tag': 'ALQ_7d9b117a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00447.RNA-Seq.R2_L004.T C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 170823_UNC31-K00269_0075_AHLCW5BBXX_ATCACG_S13_L004_R2_001.fastq.gz 3892291967 FASTQ R2_L004 unaligned CPTAC3 4690c1e9-6e9e-4f8f-b36a-e88f0fc5eb44 ae8f79377081648b4e22ae70e18f3013 { 'aliquot_tag': 'ALQ_b57b9e0a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00447.RNA-Seq.R2_L005.A C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 171208_UNC32-K00270_0071_BHN7K5BBXX_ATGTCA_S48_L005_R2_001.fastq.gz 3459761848 FASTQ R2_L005 unaligned CPTAC3 e0807d28-39f2-4c6c-bd40-371a132840a8 87667a71505a8e833e20817dec9110a8 { 'aliquot_tag': 'ALQ_7d9b117a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-00447.RNA-Seq.transcriptome.A.hg38 C3L-00447 CCRCC RNA-Seq tissue_normal CPT0006950006 b6457ad7-5901-4cc1-8d1f-a42bda073961.rna_seq.transcriptome.gdc_realn.bam 8094615375 BAM transcriptome harmonized CPTAC3 d0dbdc7c-d428-4e10-b7cc-c280ba6c4ffc df6ac44df30d4abb54cae96417afd433 { 'aliquot_tag': 'ALQ_7d9b117a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00447.RNA-Seq.transcriptome.T.hg38 C3L-00447 CCRCC RNA-Seq tumor CPT0006900006 7519e7c2-c27f-4da2-9e0a-e091ff1e0136.rna_seq.transcriptome.gdc_realn.bam 10052022014 BAM transcriptome harmonized CPTAC3 deae93bf-2d6b-4164-a140-c0324af3d95d 671ac1fa9aa9e77cbf8010b755a16ec0 { 'aliquot_tag': 'ALQ_b57b9e0a', 'gdc_sample_type': 'Primary Tumor' } C3L-00447.WGS.A C3L-00447 CCRCC WGS tissue_normal CPT0006950009 CPT0006950009.WholeGenome.RP-1303.bam 60240452401 BAM aligned CPTAC3 f3e6620b-16da-4707-be82-5b9be904677c b5f2ce9ecc1c05464409d264858889e8 { 'aliquot_tag': 'ALQ_ed240ceb', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2447,12 +2886,12 @@ C3L-00448.miRNA-Seq.T C3L-00448 CCRCC miRNA-Seq tumor CPT0010160009 181012_UNC32 C3L-00448.miRNA-Seq.T.hg38 C3L-00448 CCRCC miRNA-Seq tumor CPT0010160009 1f02511f-4274-47d0-aa08-8d6ad7b1e363_mirnaseq_gdc_realn.bam 245351635 BAM harmonized CPTAC3 1cd59866-09fa-46f6-be9a-70f79234b508 6a51d9599ca2b70a34da3d7acf2bf5d4 { 'aliquot_tag': 'ALQ_e9adc1f2', 'gdc_sample_type': 'Primary Tumor' } C3L-00448.RNA-Seq.chimeric.A.hg38 C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 6fea9367-e004-4337-89f8-0897d3d96af9.rna_seq.chimeric.gdc_realn.bam 92397272 BAM chimeric harmonized CPTAC3 3cd56efb-c2da-4541-9cf9-7a049daf672d 8c5f9b1920a6ee35739bd9fef9839ed2 { 'aliquot_tag': 'ALQ_4472f5d3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00448.RNA-Seq.chimeric.T.hg38 C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 d54185d1-5a70-4491-92f5-ab8587ccd6e4.rna_seq.chimeric.gdc_realn.bam 136401882 BAM chimeric harmonized CPTAC3 c1b3b543-38b4-4529-9ba6-1ae0993cb508 9b2d5e163af3f5c4abb2209815555e5f { 'aliquot_tag': 'ALQ_e9adc1f2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00448.RNA-Seq.genomic.A.hg38 C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 6fea9367-e004-4337-89f8-0897d3d96af9.rna_seq.genomic.gdc_realn.bam 8013111817 BAM genomic harmonized CPTAC3 4e609d4f-1156-4bc1-b3aa-aac412820bbe 8908c4a404b9496f11ae6fd498dfde4d { 'aliquot_tag': 'ALQ_4472f5d3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00448.RNA-Seq.genomic.A.hg38 C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 6fea9367-e004-4337-89f8-0897d3d96af9.rna_seq.genomic.gdc_realn.bam 8013111817 BAM genomic harmonized CPTAC3 6e148aff-5aba-42a2-b5ff-5f81f3d7d5da 8908c4a404b9496f11ae6fd498dfde4d { 'aliquot_tag': 'ALQ_4472f5d3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00448.RNA-Seq.genomic.T.hg38 C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 d54185d1-5a70-4491-92f5-ab8587ccd6e4.rna_seq.genomic.gdc_realn.bam 7211488627 BAM genomic harmonized CPTAC3 f9fa4f23-f59a-4e0c-8f68-f06b3f7d6119 0bee55218b03db2c07945397556ebeec { 'aliquot_tag': 'ALQ_e9adc1f2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00448.RNA-Seq.R1_L006.T C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L006_R1_001.fastq.gz 3754468444 FASTQ R1_L006 unaligned CPTAC3 d1a97b50-e454-4328-9721-c42b5b0fbf77 6db9e5ea09fc22134621e23ab91ae7d1 { 'aliquot_tag': 'ALQ_e9adc1f2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00448.RNA-Seq.R1_L008.A C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L008_R1_001.fastq.gz 3512494128 FASTQ R1_L008 unaligned CPTAC3 6e349078-0a09-424f-b71a-8b7828baef69 d1af5af64060798f4cc11fad695b034d { 'aliquot_tag': 'ALQ_4472f5d3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00448.RNA-Seq.R2_L006.T C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L006_R2_001.fastq.gz 4057485300 FASTQ R2_L006 unaligned CPTAC3 f8cb4da2-4715-47ba-b2ce-6ca381286e33 d3b3c4616803057ecc473ebba596db7a { 'aliquot_tag': 'ALQ_e9adc1f2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00448.RNA-Seq.R2_L008.A C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L008_R2_001.fastq.gz 3947658167 FASTQ R2_L008 unaligned CPTAC3 155f1043-34af-4c84-8f61-0f31e6d74e78 068eb50eb8f964eea3c9c9a76c04811a { 'aliquot_tag': 'ALQ_4472f5d3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00448.RNA-Seq.R1_L006.T C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L006_R1_001.fastq.gz 3754468444 FASTQ R1_L006 unaligned CPTAC3 d1a97b50-e454-4328-9721-c42b5b0fbf77 6db9e5ea09fc22134621e23ab91ae7d1 { 'aliquot_tag': 'ALQ_e9adc1f2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00448.RNA-Seq.R1_L008.A C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L008_R1_001.fastq.gz 3512494128 FASTQ R1_L008 unaligned CPTAC3 6e349078-0a09-424f-b71a-8b7828baef69 d1af5af64060798f4cc11fad695b034d { 'aliquot_tag': 'ALQ_4472f5d3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00448.RNA-Seq.R2_L006.T C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGTACG_S22_L006_R2_001.fastq.gz 4057485300 FASTQ R2_L006 unaligned CPTAC3 f8cb4da2-4715-47ba-b2ce-6ca381286e33 d3b3c4616803057ecc473ebba596db7a { 'aliquot_tag': 'ALQ_e9adc1f2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-00448.RNA-Seq.R2_L008.A C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L008_R2_001.fastq.gz 3947658167 FASTQ R2_L008 unaligned CPTAC3 155f1043-34af-4c84-8f61-0f31e6d74e78 068eb50eb8f964eea3c9c9a76c04811a { 'aliquot_tag': 'ALQ_4472f5d3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00448.RNA-Seq.transcriptome.A.hg38 C3L-00448 CCRCC RNA-Seq tissue_normal CPT0010170006 6fea9367-e004-4337-89f8-0897d3d96af9.rna_seq.transcriptome.gdc_realn.bam 8662135619 BAM transcriptome harmonized CPTAC3 def89b91-aeaf-4d43-99e4-b40fb67c5660 f114a9d431f16cdfb32e539cbf61b1fc { 'aliquot_tag': 'ALQ_4472f5d3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00448.RNA-Seq.transcriptome.T.hg38 C3L-00448 CCRCC RNA-Seq tumor CPT0010160009 d54185d1-5a70-4491-92f5-ab8587ccd6e4.rna_seq.transcriptome.gdc_realn.bam 10339706680 BAM transcriptome harmonized CPTAC3 a1a3add0-730d-4140-b98a-2581416c1e99 0cbab83304425a22c425d728fb143529 { 'aliquot_tag': 'ALQ_e9adc1f2', 'gdc_sample_type': 'Primary Tumor' } C3L-00448.WGS.A C3L-00448 CCRCC WGS tissue_normal CPT0010170009 CPT0010170009.WholeGenome.RP-1303.bam 67511754016 BAM aligned CPTAC3 29fb0150-46f1-4dab-9623-f02ced83a3a1 d1ced1b8f153f1b08c46ad3592343a82 { 'aliquot_tag': 'ALQ_d4cde842', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2472,12 +2911,15 @@ C3L-00449.MethArray.Red.T C3L-00449 UCEC Methylation Array tumor CPT0007100009 2 C3L-00449.miRNA-Seq.T C3L-00449 UCEC miRNA-Seq tumor CPT0007100006 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L005_R1_001.unaln.bam 214438051 BAM unaligned CPTAC3 e88f8cbc-1200-4154-94e7-7c16a5abaecb c55f9b2c507087c5ca63140d9e4674c0 { 'aliquot_tag': 'ALQ_ff5f17d3', 'gdc_sample_type': 'Primary Tumor' } C3L-00449.miRNA-Seq.T.hg38 C3L-00449 UCEC miRNA-Seq tumor CPT0007100006 3cc09b8a-a2cf-4fe4-a333-f9f10fb7cee6_mirnaseq_gdc_realn.bam 237632892 BAM harmonized CPTAC3 73a3b68e-4cb7-4291-ad9a-63a975773791 85bc82d68a0828c714d34a5f258e5d7e { 'aliquot_tag': 'ALQ_ff5f17d3', 'gdc_sample_type': 'Primary Tumor' } C3L-00449.RNA-Seq.chimeric.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0007100006 74e4cad1-e75a-4ab4-a79e-d3ca48d77b60.rna_seq.chimeric.gdc_realn.bam 88485323 BAM chimeric harmonized CPTAC3 587ef1a4-dc28-4d53-a81e-c53df6c0108c 38e4df5f3326a22602ce4d1811aed978 { 'aliquot_tag': 'ALQ_ff5f17d3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00449.RNA-Seq.genomic.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0007100006 74e4cad1-e75a-4ab4-a79e-d3ca48d77b60.rna_seq.genomic.gdc_realn.bam 8284152182 BAM genomic harmonized CPTAC3 9dff4736-323f-4300-937d-529b731699b1 35749b6a79f0a700b9b7a0604db5e913 { 'aliquot_tag': 'ALQ_ff5f17d3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00449.RNA-Seq.R1_L004.T C3L-00449 UCEC RNA-Seq tumor CPT0007100006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGATGT_S16_L004_R1_001.fastq.gz 3891984320 FASTQ R1_L004 unaligned CPTAC3 f77c5bff-f9df-4a57-a2e9-391fcd5a6ba2 4103f8be23739f9355b27a84122672cd { 'aliquot_tag': 'ALQ_ff5f17d3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00449.RNA-Seq.R1_.T C3L-00449 UCEC RNA-Seq tumor CPT0349670001 20210723_P2_D4_WB7988-plate2_S40_R1_001.fastq.gz 4197933703 FASTQ R1_ unaligned CPTAC3 ed0bf20a-e2ae-4473-a73a-dab717bbd173 84ae2ddb5700c0d64a416ba0cb8ceea1 { 'aliquot_tag': 'ALQ_23e627ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-00449.RNA-Seq.R2_L004.T C3L-00449 UCEC RNA-Seq tumor CPT0007100006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGATGT_S16_L004_R2_001.fastq.gz 4249237550 FASTQ R2_L004 unaligned CPTAC3 1faa1af4-b72b-4267-a86a-893fa2f67d7f 6b08d6e0720c2963040e16ffd6db3f7c { 'aliquot_tag': 'ALQ_ff5f17d3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00449.RNA-Seq.R2_.T C3L-00449 UCEC RNA-Seq tumor CPT0349670001 20210723_P2_D4_WB7988-plate2_S40_R2_001.fastq.gz 4350501314 FASTQ R2_ unaligned CPTAC3 88876704-973d-4605-b97f-b3dd61e4a2a1 0c11987b303fd4b8599005e92b18bbf1 { 'aliquot_tag': 'ALQ_23e627ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-00449.RNA-Seq.chimeric.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0349670001 c95bda6d-fe74-4503-b94f-0dc33693d4fa.rna_seq.chimeric.gdc_realn.bam 153084134 BAM chimeric harmonized CPTAC3 bb85598a-0292-4dde-9036-84a9a7a4db72 c259ff72e1a885cbfec1a3501910be6e { 'aliquot_tag': 'ALQ_23e627ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-00449.RNA-Seq.genomic.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0007100006 74e4cad1-e75a-4ab4-a79e-d3ca48d77b60.rna_seq.genomic.gdc_realn.bam 8284152182 BAM genomic harmonized CPTAC3 7e293398-10dc-4689-a8e0-6a5567150eae 35749b6a79f0a700b9b7a0604db5e913 { 'aliquot_tag': 'ALQ_ff5f17d3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00449.RNA-Seq.genomic.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0349670001 c95bda6d-fe74-4503-b94f-0dc33693d4fa.rna_seq.genomic.gdc_realn.bam 7470227648 BAM genomic harmonized CPTAC3 ecd3fe52-ea4c-4791-8a9c-e2c6f34acb23 1671d352267e2f2c6e8eeac84650f75a { 'aliquot_tag': 'ALQ_23e627ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-00449.RNA-Seq.R1_L004.T C3L-00449 UCEC RNA-Seq tumor CPT0007100006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGATGT_S16_L004_R1_001.fastq.gz 3891984320 FASTQ R1_L004 unaligned CPTAC3 f77c5bff-f9df-4a57-a2e9-391fcd5a6ba2 4103f8be23739f9355b27a84122672cd { 'aliquot_tag': 'ALQ_ff5f17d3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00449.RNA-Seq.R2_L004.T C3L-00449 UCEC RNA-Seq tumor CPT0007100006 170823_UNC31-K00269_0075_AHLCW5BBXX_CGATGT_S16_L004_R2_001.fastq.gz 4249237550 FASTQ R2_L004 unaligned CPTAC3 1faa1af4-b72b-4267-a86a-893fa2f67d7f 6b08d6e0720c2963040e16ffd6db3f7c { 'aliquot_tag': 'ALQ_ff5f17d3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00449.RNA-Seq.T C3L-00449 UCEC RNA-Seq tumor CPT0349670001 20210723_P2_D4_WB7988-plate2_S40_R1_001.fastq.gz 4197933703 FASTQ unaligned CPTAC3 ed0bf20a-e2ae-4473-a73a-dab717bbd173 84ae2ddb5700c0d64a416ba0cb8ceea1 +C3L-00449.RNA-Seq.T C3L-00449 UCEC RNA-Seq tumor CPT0349670001 20210723_P2_D4_WB7988-plate2_S40_R2_001.fastq.gz 4350501314 FASTQ unaligned CPTAC3 88876704-973d-4605-b97f-b3dd61e4a2a1 0c11987b303fd4b8599005e92b18bbf1 C3L-00449.RNA-Seq.transcriptome.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0007100006 74e4cad1-e75a-4ab4-a79e-d3ca48d77b60.rna_seq.transcriptome.gdc_realn.bam 11653781607 BAM transcriptome harmonized CPTAC3 d82c17aa-52cc-4f9c-a9d5-be2ddffda9af 70493903f32fb5d0f9b773660e0dd01d { 'aliquot_tag': 'ALQ_ff5f17d3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00449.RNA-Seq.transcriptome.T.hg38 C3L-00449 UCEC RNA-Seq tumor CPT0349670001 c95bda6d-fe74-4503-b94f-0dc33693d4fa.rna_seq.transcriptome.gdc_realn.bam 3770838634 BAM transcriptome harmonized CPTAC3 6f6f8d4a-065e-4ffe-a8a8-aa99d4a13240 7cd4b7bd4bf92e30117fe6411ecf8e7d { 'aliquot_tag': 'ALQ_23e627ba', 'gdc_sample_type': 'Primary Tumor' } C3L-00449.WGS.N C3L-00449 UCEC WGS blood_normal CPT0002770002 CPT0002770002.WholeGenome.RP-1303.bam 81149681684 BAM aligned CPTAC3 dbc49891-a7fd-4ef3-8c4e-f4edc7a5024d 9173f9205964fba9b71dde665ba05631 { 'aliquot_tag': 'ALQ_ce73c360', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00449.WGS.N.hg38 C3L-00449 UCEC WGS blood_normal CPT0002770002 5a75740b-ad5b-4f29-8b9e-1d011f50aac7_gdc_realn.bam 118804355054 BAM harmonized CPTAC3 688ef886-6324-46d5-89ee-11be2c3c3b8b 607a412c98955474a9c9e3d47b33cbbb { 'aliquot_tag': 'ALQ_ce73c360', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00449.WGS.T C3L-00449 UCEC WGS tumor CPT0007100009 CPT0007100009.WholeGenome.RP-1303.bam 73060765257 BAM aligned CPTAC3 08044ed5-cb84-4e26-a145-702633db7ba7 6047a6151dad8e619fbca70c75a9a616 { 'aliquot_tag': 'ALQ_6fe00a42', 'gdc_sample_type': 'Primary Tumor' } @@ -2490,11 +2932,11 @@ C3L-00452.MethArray.Green.Tbm C3L-00452 AML Methylation Array tumor_bone_marrow C3L-00452.MethArray.Red.Tbm C3L-00452 AML Methylation Array tumor_bone_marrow CPT0018070002 202234380024_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 a27cf150-1ded-489e-9971-0d934c6679ae 9d048321c4c56d52e62c8a4e736cf2c3 { 'aliquot_tag': 'ALQ_bbacac08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00452.miRNA-Seq.Tbm C3L-00452 AML miRNA-Seq tumor_bone_marrow CPT0018040002 180724_UNC32-K00270_0106_BHWK3MBBXX_ATCACG_S25_L008_R1_001.unaln.bam 254108921 BAM unaligned CPTAC3 2d23609d-8720-40fd-b7ae-670be8d711c2 52851784909a78a98a19bd92b645161d { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00452.miRNA-Seq.Tbm.hg38 C3L-00452 AML miRNA-Seq tumor_bone_marrow CPT0018040002 8d705e15-d3cc-4cd6-a738-7e446393c1bd_mirnaseq_gdc_realn.bam 267589800 BAM harmonized CPTAC3 1e7d9791-3b5e-4cc1-8590-ce666d8633e1 207387a83ce8d373b305a24c0ad91e1e { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00452.RNA-Seq.chimeric.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 8b60b628-fe2e-4ebc-9cfb-7e8551449861.rna_seq.chimeric.gdc_realn.bam 59172519 BAM chimeric harmonized CPTAC3 46ebbb43-4933-4540-addd-06573a7f5555 8e7c247ee3a1f49bcdc8a8b11d9a67a6 { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00452.RNA-Seq.genomic.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 8b60b628-fe2e-4ebc-9cfb-7e8551449861.rna_seq.genomic.gdc_realn.bam 9422337242 BAM genomic harmonized CPTAC3 d458ad28-fe03-4af0-9da4-570e9bffe556 222203195bcf31fc65ccf37b28e23e43 { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00452.RNA-Seq.R1_L005.Tbm C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 171116_UNC31-K00269_0093_BHMFKJBBXX_ATCACG_S18_L005_R1_001.fastq.gz 4094003394 FASTQ R1_L005 unaligned CPTAC3 e3bcf26f-ee7e-479e-b957-e5ade5eca769 06954934d1fe26bbebfb2e67ad38166b { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00452.RNA-Seq.R2_L005.Tbm C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 171116_UNC31-K00269_0093_BHMFKJBBXX_ATCACG_S18_L005_R2_001.fastq.gz 4032209570 FASTQ R2_L005 unaligned CPTAC3 5505543b-e537-4d2a-b0f3-3eef15780673 eb0d2cce7bab9d5b272724cb8cb1f033 { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00452.RNA-Seq.transcriptome.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 8b60b628-fe2e-4ebc-9cfb-7e8551449861.rna_seq.transcriptome.gdc_realn.bam 8545074783 BAM transcriptome harmonized CPTAC3 7550e84d-c364-4bc0-8ae9-dc1ebe2d7498 f76f7a7b249273281359ac4d9aa665c0 { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00452.RNA-Seq.chimeric.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 3d75b671-0b0f-47af-ab1e-5be248a19f6f.rna_seq.chimeric.gdc_realn.bam 59155781 BAM chimeric harmonized CPTAC3 b4ccc9bd-fb70-4bcb-bb30-37bd1becfbce f5e3e72099d18c116e49cca47a51477f { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00452.RNA-Seq.genomic.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 3d75b671-0b0f-47af-ab1e-5be248a19f6f.rna_seq.genomic.gdc_realn.bam 9490961278 BAM genomic harmonized CPTAC3 255db370-3dec-4150-958c-84bb88ba10ae 79a2dfcdba8d4eda13d18a402cc478de { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00452.RNA-Seq.R1_L005.Tbm C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 171116_UNC31-K00269_0093_BHMFKJBBXX_ATCACG_S18_L005_R1_001.fastq.gz 4094003394 FASTQ R1_L005 unaligned CPTAC3 e3bcf26f-ee7e-479e-b957-e5ade5eca769 06954934d1fe26bbebfb2e67ad38166b { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-00452.RNA-Seq.R2_L005.Tbm C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 171116_UNC31-K00269_0093_BHMFKJBBXX_ATCACG_S18_L005_R2_001.fastq.gz 4032209570 FASTQ R2_L005 unaligned CPTAC3 5505543b-e537-4d2a-b0f3-3eef15780673 eb0d2cce7bab9d5b272724cb8cb1f033 { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-00452.RNA-Seq.transcriptome.Tbm.hg38 C3L-00452 AML RNA-Seq tumor_bone_marrow CPT0018040002 3d75b671-0b0f-47af-ab1e-5be248a19f6f.rna_seq.transcriptome.gdc_realn.bam 9657092178 BAM transcriptome harmonized CPTAC3 bceafe6a-4d5b-4ab5-b7e7-bf7f84a3775f 82ee5df8beab9936babc3c8f58c6dc20 { 'aliquot_tag': 'ALQ_fc0cd6d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00452.WGS.Tbm C3L-00452 AML WGS tumor_bone_marrow CPT0018070002 CPT0018070002.WholeGenome.RP-1303.bam 58958754833 BAM aligned CPTAC3 44b514c5-97cb-4380-9e8e-80be4c0c6519 febf425e09ac752d3344a86e793c83cb { 'aliquot_tag': 'ALQ_bbacac08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00452.WGS.Tbm.hg38 C3L-00452 AML WGS tumor_bone_marrow CPT0018070002 c6810a58-cb12-4f26-9a07-0cba34cf62a8_wgs_gdc_realn.bam 86060336124 BAM harmonized CPTAC3 4b990fbb-c678-4006-b5ff-860c9e6fd6d0 5726e50aa44847e5ec8b635a6d831688 { 'aliquot_tag': 'ALQ_bbacac08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00452.WXS.Tbm C3L-00452 AML WXS tumor_bone_marrow CPT0018070002 CPT0018070002.WholeExome.RP-1303.bam 53756994754 BAM aligned CPTAC3 9b012fcc-5cf8-47d6-9470-00a73d8cce4a b267ad0dc19a006916298049b3829aff { 'aliquot_tag': 'ALQ_bbacac08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -2503,11 +2945,11 @@ C3L-00453.MethArray.Green.Tbm C3L-00453 AML Methylation Array tumor_bone_marrow C3L-00453.MethArray.Red.Tbm C3L-00453 AML Methylation Array tumor_bone_marrow CPT0054620002 202234370093_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 3f216486-99cd-4f94-87b1-33d152f5ff37 2c49def6e5889d3c8494853c5a0af02f { 'aliquot_tag': 'ALQ_e6ffa4eb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00453.miRNA-Seq.Tbm C3L-00453 AML miRNA-Seq tumor_bone_marrow CPT0054580002 180724_UNC32-K00270_0106_BHWK3MBBXX_ACTTGA_S31_L008_R1_001.unaln.bam 267558881 BAM unaligned CPTAC3 f9ad2dbe-0e23-48e0-9f2f-d3509131436e 5cc143dda4869191bf808352fbe1b490 { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00453.miRNA-Seq.Tbm.hg38 C3L-00453 AML miRNA-Seq tumor_bone_marrow CPT0054580002 97c43712-4905-4115-a4fa-d0094bd3ef95_mirnaseq_gdc_realn.bam 278902804 BAM harmonized CPTAC3 a365c8be-f1ea-4e39-b113-5742d1a9bc15 c440058fc797698efdd5fbfbf41a42ef { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00453.RNA-Seq.chimeric.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 42162558-6cb5-4c16-8fea-1095d216b7fb.rna_seq.chimeric.gdc_realn.bam 40651259 BAM chimeric harmonized CPTAC3 06207091-f4fb-4c39-ae6e-8a0bb06afe6b 1c9cbadbb3e6c2859b8d1545b33fb8ef { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00453.RNA-Seq.genomic.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 42162558-6cb5-4c16-8fea-1095d216b7fb.rna_seq.genomic.gdc_realn.bam 7074593821 BAM genomic harmonized CPTAC3 dac71cac-6e35-4071-983d-c460b3f93819 64747d5cc4fab702465b7da3053277a9 { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00453.RNA-Seq.R1_L004.Tbm C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTTGA_S15_L004_R1_001.fastq.gz 3513795167 FASTQ R1_L004 unaligned CPTAC3 cee5ec12-9d91-4a34-b9e0-82664a162d63 f8030ec35bfebf7354a69f6befc19760 { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00453.RNA-Seq.R2_L004.Tbm C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTTGA_S15_L004_R2_001.fastq.gz 3898658561 FASTQ R2_L004 unaligned CPTAC3 391e6f40-e618-47c5-a577-2f1c49aa7f67 5b46cc6847db94def23bab46dedcc029 { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00453.RNA-Seq.transcriptome.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 42162558-6cb5-4c16-8fea-1095d216b7fb.rna_seq.transcriptome.gdc_realn.bam 8816046448 BAM transcriptome harmonized CPTAC3 2fe435ac-53b3-4f24-b711-b6687b330df3 be594a42ee254b9cff683f62460cb1c1 { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00453.RNA-Seq.chimeric.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 287fbd0d-0b3a-40b8-9cc6-3f721f3380bd.rna_seq.chimeric.gdc_realn.bam 40627112 BAM chimeric harmonized CPTAC3 c394c92b-7574-4b0b-a43b-3d0b1dbc258d 01e0d940b1a9f7492e1cda2e14c42dce { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00453.RNA-Seq.genomic.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 287fbd0d-0b3a-40b8-9cc6-3f721f3380bd.rna_seq.genomic.gdc_realn.bam 7074959042 BAM genomic harmonized CPTAC3 daa5c985-518e-4067-85f6-a9e5b2303c68 c864bef975acc627c661c86b4d60fe7f { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00453.RNA-Seq.R1_L004.Tbm C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTTGA_S15_L004_R1_001.fastq.gz 3513795167 FASTQ R1_L004 unaligned CPTAC3 cee5ec12-9d91-4a34-b9e0-82664a162d63 f8030ec35bfebf7354a69f6befc19760 { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-00453.RNA-Seq.R2_L004.Tbm C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTTGA_S15_L004_R2_001.fastq.gz 3898658561 FASTQ R2_L004 unaligned CPTAC3 391e6f40-e618-47c5-a577-2f1c49aa7f67 5b46cc6847db94def23bab46dedcc029 { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-00453.RNA-Seq.transcriptome.Tbm.hg38 C3L-00453 AML RNA-Seq tumor_bone_marrow CPT0054580002 287fbd0d-0b3a-40b8-9cc6-3f721f3380bd.rna_seq.transcriptome.gdc_realn.bam 10050460210 BAM transcriptome harmonized CPTAC3 28efe605-7567-4f9b-9b6e-ebe12995bc5f 047f8aa92ec3ac940e3e25abe6c9c67c { 'aliquot_tag': 'ALQ_2adbcee4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00453.WGS.Nbc C3L-00453 AML WGS buccal_normal CPT0054690005 CPT0054690005.WholeGenome.RP-1303.bam 61651871560 BAM aligned CPTAC3 d58d2353-a50e-4e4f-8635-bc82cabcfd67 7fb23178fe08d18d9d4f9901044ea148 { 'aliquot_tag': 'ALQ_f4b0059', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00453.WGS.Nbc.hg38 C3L-00453 AML WGS buccal_normal CPT0054690005 f98a5d79-749c-4429-89c1-9d3851f5bf83_wgs_gdc_realn.bam 93094661051 BAM harmonized CPTAC3 81c4a2f0-222a-44be-94be-54b1c8095f79 1247bc31d676a154e871d12226590e2b { 'aliquot_tag': 'ALQ_f4b0059', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00453.WGS.Tbm C3L-00453 AML WGS tumor_bone_marrow CPT0054620002 CPT0054620002.WholeGenome.RP-1303.bam 60288249137 BAM aligned CPTAC3 0f0ba2c8-dff7-4237-849a-e6ad1a93594f e4a3f80a0f4e3248222e9ccf1e877382 { 'aliquot_tag': 'ALQ_e6ffa4eb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -2520,11 +2962,11 @@ C3L-00455.MethArray.Green.Tbm C3L-00455 AML Methylation Array tumor_bone_marrow C3L-00455.MethArray.Red.Tbm C3L-00455 AML Methylation Array tumor_bone_marrow CPT0054500002 202176290105_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 8b35ecbd-b2e6-4e54-9a01-c38778c7de36 f7e103cccaf6b845b2893f37ddc77d08 { 'aliquot_tag': 'ALQ_1aab8525', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00455.miRNA-Seq.Tbm C3L-00455 AML miRNA-Seq tumor_bone_marrow CPT0054530002 180924_UNC31-K00269_0154_AHWTMLBBXX_TCCCGA_S26_L002_R1_001.unaln.bam 215904033 BAM unaligned CPTAC3 6fe85f9c-b40f-4c6e-bda0-9281bfedd113 33013e9f05c0551a002daf2fa3b8055f { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00455.miRNA-Seq.Tbm.hg38 C3L-00455 AML miRNA-Seq tumor_bone_marrow CPT0054530002 f401a998-3c9a-43e0-98b3-cb4c6f71a0a8_mirnaseq_gdc_realn.bam 228472783 BAM harmonized CPTAC3 491dddaa-5b75-48ad-bdab-6f8868570129 1a0e68714c104303cb9be9e1a63fb5b9 { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00455.RNA-Seq.chimeric.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 ea5f0a55-ffb7-4b13-a62c-8da36ace11fe.rna_seq.chimeric.gdc_realn.bam 44548231 BAM chimeric harmonized CPTAC3 0905c81e-54fb-4b97-9000-5d7654731c36 c52b925f206275d320131bf4ae1df633 { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00455.RNA-Seq.genomic.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 ea5f0a55-ffb7-4b13-a62c-8da36ace11fe.rna_seq.genomic.gdc_realn.bam 11107096486 BAM genomic harmonized CPTAC3 d864bd21-ee90-461f-9ddd-bfe9a53d9e4f f8853697f4f3c875e0d7dbb716e2b6a1 { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00455.RNA-Seq.R1_L004.Tbm C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTTGA_S14_L004_R1_001.fastq.gz 4469739392 FASTQ R1_L004 unaligned CPTAC3 f0783087-c82a-4b61-aa63-73e600fc9795 8567b031328d5f0581e06f78647d7ff8 { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00455.RNA-Seq.R2_L004.Tbm C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTTGA_S14_L004_R2_001.fastq.gz 4899302775 FASTQ R2_L004 unaligned CPTAC3 755b832b-3ed5-413b-b62b-8dd8ed6079b7 72f1e5fc9528c1dde7eed27dc107f61d { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00455.RNA-Seq.transcriptome.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 ea5f0a55-ffb7-4b13-a62c-8da36ace11fe.rna_seq.transcriptome.gdc_realn.bam 10947571718 BAM transcriptome harmonized CPTAC3 26410230-6350-443a-b4ca-d3c74326f184 ff33a69d631366f95e1e8b0feb3ae425 { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00455.RNA-Seq.chimeric.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 6f7306d8-f1e2-4cd7-9e57-f75382c7a32c.rna_seq.chimeric.gdc_realn.bam 44533448 BAM chimeric harmonized CPTAC3 4e1a6357-16a0-4eb2-8600-a35f05e243f8 cd86bb066f2456c678dd553f44e645f2 { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00455.RNA-Seq.genomic.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 6f7306d8-f1e2-4cd7-9e57-f75382c7a32c.rna_seq.genomic.gdc_realn.bam 11108676516 BAM genomic harmonized CPTAC3 dfdb4164-fe88-4631-8073-e68ee040fdc9 d55c9f0ecef45e1659295e9e8b2acce3 { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00455.RNA-Seq.R1_L004.Tbm C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTTGA_S14_L004_R1_001.fastq.gz 4469739392 FASTQ R1_L004 unaligned CPTAC3 f0783087-c82a-4b61-aa63-73e600fc9795 8567b031328d5f0581e06f78647d7ff8 { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-00455.RNA-Seq.R2_L004.Tbm C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTTGA_S14_L004_R2_001.fastq.gz 4899302775 FASTQ R2_L004 unaligned CPTAC3 755b832b-3ed5-413b-b62b-8dd8ed6079b7 72f1e5fc9528c1dde7eed27dc107f61d { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-00455.RNA-Seq.transcriptome.Tbm.hg38 C3L-00455 AML RNA-Seq tumor_bone_marrow CPT0054530002 6f7306d8-f1e2-4cd7-9e57-f75382c7a32c.rna_seq.transcriptome.gdc_realn.bam 12418844716 BAM transcriptome harmonized CPTAC3 246e55bd-01f6-4955-ab9c-cde5673b0177 d138c9801546d93ba667cfaf0a15587b { 'aliquot_tag': 'ALQ_5d0bfff5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00455.WGS.Nbc C3L-00455 AML WGS buccal_normal CPT0054550002 CPT0054550002.WholeGenome.RP-1303.bam 73069954598 BAM aligned CPTAC3 7146aec8-2c3d-43cc-891d-68dd6a9e2f16 339111a6162fa7f200c0f15375f662dd { 'aliquot_tag': 'ALQ_d24b0a55', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00455.WGS.Nbc.hg38 C3L-00455 AML WGS buccal_normal CPT0054550002 53b178ad-5458-411b-9495-2e35e186f2a3_gdc_realn.bam 110303377443 BAM harmonized CPTAC3 1210073b-32e5-4acf-a539-58eceab95e18 6bbfc03e5a9f2813dca66291460db5de { 'aliquot_tag': 'ALQ_d24b0a55', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00455.WGS.Tbm C3L-00455 AML WGS tumor_bone_marrow CPT0054500002 CPT0054500002.WholeGenome.RP-1303.bam 93285274251 BAM aligned CPTAC3 eeb5756a-d421-46bc-8f58-1f92a835e2c3 0223411553f70db90bc279c19d0c1207 { 'aliquot_tag': 'ALQ_1aab8525', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -2541,11 +2983,11 @@ C3L-00457.MethArray.Green.Tbm C3L-00457 AML Methylation Array tumor_bone_marrow C3L-00457.MethArray.Red.Tbm C3L-00457 AML Methylation Array tumor_bone_marrow CPT0054850002 202234380064_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 abc0671f-cdbd-42fd-a021-468d4122a939 ab0d11b8e8a5a3d17ab13a110c61d7e3 { 'aliquot_tag': 'ALQ_6ed5198b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00457.miRNA-Seq.Tbm C3L-00457 AML miRNA-Seq tumor_bone_marrow CPT0054830002 180828_UNC32-K00270_0112_AHWTLNBBXX_ATCACG_S23_L006_R1_001.unaln.bam 224690054 BAM unaligned CPTAC3 18da77a0-292f-4e78-9b17-b9eb7afdfe09 0c9d3b515e4fbe840a32de1d2b70d16b { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00457.miRNA-Seq.Tbm.hg38 C3L-00457 AML miRNA-Seq tumor_bone_marrow CPT0054830002 7054e982-11d1-40cc-8a0f-bfd8dbcb2405_mirnaseq_gdc_realn.bam 241966461 BAM harmonized CPTAC3 deeecc20-3528-4881-bf5f-47a8bd845b20 01b36ca3f31d210a35d0c89b8d50fbc7 { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00457.RNA-Seq.chimeric.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 bce9b61d-29ae-412b-aed2-b7d56e861bb1.rna_seq.chimeric.gdc_realn.bam 50325642 BAM chimeric harmonized CPTAC3 3138c5df-c43d-46ad-8fb8-5e33a5453fad c67d6234ca798df87ced93d8ee1bbdf0 { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00457.RNA-Seq.genomic.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 bce9b61d-29ae-412b-aed2-b7d56e861bb1.rna_seq.genomic.gdc_realn.bam 10862547891 BAM genomic harmonized CPTAC3 7d9370a0-942a-4531-a8ef-1d527d0348f5 b2ef8261b22d11f80643411b6cfd1ef9 { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00457.RNA-Seq.R1_L002.Tbm C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L002_R1_001.fastq.gz 5237946882 FASTQ R1_L002 unaligned CPTAC3 7fbb57ea-ce5f-460f-926c-bcd3c497d48e a33def0b3a04518a9c29bfa98ba43292 { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00457.RNA-Seq.R2_L002.Tbm C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L002_R2_001.fastq.gz 5266271358 FASTQ R2_L002 unaligned CPTAC3 c2c12512-899d-403d-8eee-2bb9b031489b 7d0266cc7ee64672f0a6e36841e7aaa7 { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00457.RNA-Seq.transcriptome.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 bce9b61d-29ae-412b-aed2-b7d56e861bb1.rna_seq.transcriptome.gdc_realn.bam 12648983141 BAM transcriptome harmonized CPTAC3 d519a498-47d6-4c52-b07c-5f69f318653e 4064e15c40fe85930e4a70b5459f65e9 { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00457.RNA-Seq.chimeric.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 30f9ccd0-546e-42eb-9c4b-761b2b3c9b6a.rna_seq.chimeric.gdc_realn.bam 50298528 BAM chimeric harmonized CPTAC3 fb91945d-a6e3-4c54-a96d-a949573e233c 80af84ad865ba479c62db74747e35718 { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00457.RNA-Seq.genomic.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 30f9ccd0-546e-42eb-9c4b-761b2b3c9b6a.rna_seq.genomic.gdc_realn.bam 10861561464 BAM genomic harmonized CPTAC3 d96884b3-5acb-431a-8691-eea2f024e3e7 6b97c5361a7aa78b36762d01ceb7b353 { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00457.RNA-Seq.R1_L002.Tbm C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L002_R1_001.fastq.gz 5237946882 FASTQ R1_L002 unaligned CPTAC3 7fbb57ea-ce5f-460f-926c-bcd3c497d48e a33def0b3a04518a9c29bfa98ba43292 { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-00457.RNA-Seq.R2_L002.Tbm C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L002_R2_001.fastq.gz 5266271358 FASTQ R2_L002 unaligned CPTAC3 c2c12512-899d-403d-8eee-2bb9b031489b 7d0266cc7ee64672f0a6e36841e7aaa7 { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-00457.RNA-Seq.transcriptome.Tbm.hg38 C3L-00457 AML RNA-Seq tumor_bone_marrow CPT0054830002 30f9ccd0-546e-42eb-9c4b-761b2b3c9b6a.rna_seq.transcriptome.gdc_realn.bam 14406441392 BAM transcriptome harmonized CPTAC3 61e915b2-53d0-4fda-9358-33f963c1a6e0 ab27bdc887ff9d937b154ef90e9bf48f { 'aliquot_tag': 'ALQ_e195ec2b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00457.WGS.Tbm C3L-00457 AML WGS tumor_bone_marrow CPT0054850002 CPT0054850002.WholeGenome.RP-1303.bam 56262061965 BAM aligned CPTAC3 86f2966f-8004-4a17-a5c8-acbba5e47bd7 67ce2d33cbc3af62d8c6439564023da8 { 'aliquot_tag': 'ALQ_6ed5198b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00457.WGS.Tbm.hg38 C3L-00457 AML WGS tumor_bone_marrow CPT0054850002 6a3c7519-742a-4459-9abb-5c9a43c8d3f8_wgs_gdc_realn.bam 82332121109 BAM harmonized CPTAC3 34d5947e-1b54-49b7-a505-93fe5511f669 671b6e89cb2d352ea4947cb831476c54 { 'aliquot_tag': 'ALQ_6ed5198b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00457.WXS.Tbm C3L-00457 AML WXS tumor_bone_marrow CPT0054850002 CPT0054850002.WholeExome.RP-1303.bam 34186082977 BAM aligned CPTAC3 f5d8c6aa-ebab-4d81-89ec-82b9621b1d35 288540238740efeb4114faba2b8b6979 { 'aliquot_tag': 'ALQ_6ed5198b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -2554,11 +2996,11 @@ C3L-00458.MethArray.Green.Tbm C3L-00458 AML Methylation Array tumor_bone_marrow C3L-00458.MethArray.Red.Tbm C3L-00458 AML Methylation Array tumor_bone_marrow CPT0054750002 202176290087_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 696ecd16-72eb-4a38-b07f-5db23b46500d 8fde17be218c4de99f61f02f33cfd653 { 'aliquot_tag': 'ALQ_9f83ab5e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00458.miRNA-Seq.Tbm C3L-00458 AML miRNA-Seq tumor_bone_marrow CPT0054770002 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L001_R1_001.unaln.bam 151314497 BAM unaligned CPTAC3 af0a24c9-59f1-4096-b9c8-33304ed5c4ff 55468369d6ffa5d5aa1bd5b35c56b44b { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00458.miRNA-Seq.Tbm.hg38 C3L-00458 AML miRNA-Seq tumor_bone_marrow CPT0054770002 adb5deb5-63a4-4682-800f-00b930679fa2_mirnaseq_gdc_realn.bam 170858505 BAM harmonized CPTAC3 af7ec801-2b30-43fb-b8cd-d9bf7ce7997b 1c7335f481b089ba197d29b755497017 { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00458.RNA-Seq.chimeric.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 5efec888-8927-46e1-a675-7b5678466f60.rna_seq.chimeric.gdc_realn.bam 78550342 BAM chimeric harmonized CPTAC3 4a022837-bd20-4ae7-a4b7-990e95da37f2 a0aa0594bceea7deb795e51fa391b9f0 { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00458.RNA-Seq.genomic.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 5efec888-8927-46e1-a675-7b5678466f60.rna_seq.genomic.gdc_realn.bam 8646552067 BAM genomic harmonized CPTAC3 48ecd1f0-cbe7-4a32-aea7-c083ab745bfb 2442dfb8186b5058ab61d8aa668a5695 { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00458.RNA-Seq.R1_L006.Tbm C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 170906_UNC32-K00270_0058_BHLJ7FBBXX_CAGATC_S21_L006_R1_001.fastq.gz 3829956645 FASTQ R1_L006 unaligned CPTAC3 b2975393-27f8-41e8-a678-07b90a3911b2 5d25526bb5ac03f6e70d11a607e7a050 { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00458.RNA-Seq.R2_L006.Tbm C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 170906_UNC32-K00270_0058_BHLJ7FBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4180610952 FASTQ R2_L006 unaligned CPTAC3 62eeaa76-736b-45c8-892d-67587a27288b 5ef5c0b17f1031291ce2bc21033649ee { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00458.RNA-Seq.transcriptome.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 5efec888-8927-46e1-a675-7b5678466f60.rna_seq.transcriptome.gdc_realn.bam 7122379908 BAM transcriptome harmonized CPTAC3 9fa46e97-b90c-4e79-be2c-e798bcdeab0d dd227209450a02d801ff246a71ca814e { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00458.RNA-Seq.chimeric.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 6c809cbe-3bfc-4622-9f5e-c5cddcf45e68.rna_seq.chimeric.gdc_realn.bam 78541356 BAM chimeric harmonized CPTAC3 3c9b3fbd-b06e-4d3f-a6fa-15f2695ebeb0 3d2ebed2d01b78ecd59e29a7729d3711 { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00458.RNA-Seq.genomic.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 6c809cbe-3bfc-4622-9f5e-c5cddcf45e68.rna_seq.genomic.gdc_realn.bam 8644201287 BAM genomic harmonized CPTAC3 b8e034fb-56b2-44da-b961-587335bcf501 e2971592687f0955d7bff9ba33fef1e7 { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00458.RNA-Seq.R1_L006.Tbm C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 170906_UNC32-K00270_0058_BHLJ7FBBXX_CAGATC_S21_L006_R1_001.fastq.gz 3829956645 FASTQ R1_L006 unaligned CPTAC3 b2975393-27f8-41e8-a678-07b90a3911b2 5d25526bb5ac03f6e70d11a607e7a050 { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-00458.RNA-Seq.R2_L006.Tbm C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 170906_UNC32-K00270_0058_BHLJ7FBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4180610952 FASTQ R2_L006 unaligned CPTAC3 62eeaa76-736b-45c8-892d-67587a27288b 5ef5c0b17f1031291ce2bc21033649ee { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-00458.RNA-Seq.transcriptome.Tbm.hg38 C3L-00458 AML RNA-Seq tumor_bone_marrow CPT0054770002 6c809cbe-3bfc-4622-9f5e-c5cddcf45e68.rna_seq.transcriptome.gdc_realn.bam 8045728661 BAM transcriptome harmonized CPTAC3 d8314fb8-1523-4c4e-adc1-303093441281 e74ce001081c125ff3f10ad794289691 { 'aliquot_tag': 'ALQ_e543f83e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00458.WGS.Nbc C3L-00458 AML WGS buccal_normal CPT0054800005 CPT0054800005.WholeGenome.RP-1303.bam 77742196684 BAM aligned CPTAC3 7f076ba7-def6-48f5-ab33-526f4b6d709f d09c92df5c2ec64ab3ba77db3d09ca34 { 'aliquot_tag': 'ALQ_38510358', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00458.WGS.Nbc.hg38 C3L-00458 AML WGS buccal_normal CPT0054800005 06571337-83f2-4bf5-bf4b-bf2bcf13aa60_gdc_realn.bam 121033703970 BAM harmonized CPTAC3 32240eef-9d20-4d0d-b2c1-05600a4784d7 0836b2c48812bc69535f5c7afb6a40e1 { 'aliquot_tag': 'ALQ_38510358', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00458.WGS.Tbm C3L-00458 AML WGS tumor_bone_marrow CPT0054750002 CPT0054750002.WholeGenome.RP-1303.bam 64315378512 BAM aligned CPTAC3 3be05a64-ff2e-45d7-9140-43ee8005d06e d7e036189048e26a80b2606e9290bf48 { 'aliquot_tag': 'ALQ_9f83ab5e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -2571,11 +3013,11 @@ C3L-00459.MethArray.Green.Tbm C3L-00459 AML Methylation Array tumor_bone_marrow C3L-00459.MethArray.Red.Tbm C3L-00459 AML Methylation Array tumor_bone_marrow CPT0054960002 202234370079_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 169904d8-6b75-4e75-a9f7-4a0bec4ad37a 3b04660d626db0a67a808aa85f918736 { 'aliquot_tag': 'ALQ_e229b0fe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00459.miRNA-Seq.Tbm C3L-00459 AML miRNA-Seq tumor_bone_marrow CPT0054940002 180724_UNC32-K00270_0106_BHWK3MBBXX_CGATGT_S45_L008_R1_001.unaln.bam 254001543 BAM unaligned CPTAC3 c3e98187-c19f-49e6-8f4c-eaff3a00c8f7 5b4857e25762095c2dd0c214c973c0bf { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00459.miRNA-Seq.Tbm.hg38 C3L-00459 AML miRNA-Seq tumor_bone_marrow CPT0054940002 434b0798-2ca1-4fa1-9e11-8c37cb399965_mirnaseq_gdc_realn.bam 264738806 BAM harmonized CPTAC3 ef2e3342-ee47-4dfe-9368-59ad16d8dce1 6a4d1ae8bc85083646625f9346a76249 { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00459.RNA-Seq.chimeric.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 70f8e2e0-bc53-49bc-bd8c-dd91f0c1022a.rna_seq.chimeric.gdc_realn.bam 34715858 BAM chimeric harmonized CPTAC3 17675f1b-1e6d-44a8-ae8e-1f4ea59dcfd7 35db60ac687d57ea1f9bdf14609a0b6b { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00459.RNA-Seq.genomic.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 70f8e2e0-bc53-49bc-bd8c-dd91f0c1022a.rna_seq.genomic.gdc_realn.bam 12525961516 BAM genomic harmonized CPTAC3 c7ae5420-9a00-4f02-a30d-b019f70db8a3 bedcdd9ea5ee4fd719f80c7f7b958e58 { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00459.RNA-Seq.R1_L005.Tbm C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 171116_UNC31-K00269_0093_BHMFKJBBXX_CGATGT_S17_L005_R1_001.fastq.gz 3836207363 FASTQ R1_L005 unaligned CPTAC3 61333545-45a2-4cfd-b5c8-b95fbbbb875b 6d8309bc5abe4d5e815c68715007d420 { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00459.RNA-Seq.R2_L005.Tbm C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 171116_UNC31-K00269_0093_BHMFKJBBXX_CGATGT_S17_L005_R2_001.fastq.gz 4242868726 FASTQ R2_L005 unaligned CPTAC3 22d6579a-2e1c-4606-b175-e79e8b4d96f6 f4a8a445a82e329d96f9e73023262d3c { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00459.RNA-Seq.transcriptome.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 70f8e2e0-bc53-49bc-bd8c-dd91f0c1022a.rna_seq.transcriptome.gdc_realn.bam 9510563173 BAM transcriptome harmonized CPTAC3 0a022716-0394-4866-9fae-3905600cfef7 89e5d555bf9dca0e7eee47949f692188 { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00459.RNA-Seq.chimeric.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 117a50a0-02cc-477f-9919-afefbf129335.rna_seq.chimeric.gdc_realn.bam 34704169 BAM chimeric harmonized CPTAC3 a461f574-b1be-4a77-b6ad-8b7b8f86a34d c896782e96045ef5ac005a1445702d3d { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00459.RNA-Seq.genomic.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 117a50a0-02cc-477f-9919-afefbf129335.rna_seq.genomic.gdc_realn.bam 12522127592 BAM genomic harmonized CPTAC3 1b8eee01-1f5b-4e21-9dc8-197a7dbc041b 7bc3cd188e2766e0569e32e03b0816e4 { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00459.RNA-Seq.R1_L005.Tbm C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 171116_UNC31-K00269_0093_BHMFKJBBXX_CGATGT_S17_L005_R1_001.fastq.gz 3836207363 FASTQ R1_L005 unaligned CPTAC3 61333545-45a2-4cfd-b5c8-b95fbbbb875b 6d8309bc5abe4d5e815c68715007d420 { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-00459.RNA-Seq.R2_L005.Tbm C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 171116_UNC31-K00269_0093_BHMFKJBBXX_CGATGT_S17_L005_R2_001.fastq.gz 4242868726 FASTQ R2_L005 unaligned CPTAC3 22d6579a-2e1c-4606-b175-e79e8b4d96f6 f4a8a445a82e329d96f9e73023262d3c { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-00459.RNA-Seq.transcriptome.Tbm.hg38 C3L-00459 AML RNA-Seq tumor_bone_marrow CPT0054940002 117a50a0-02cc-477f-9919-afefbf129335.rna_seq.transcriptome.gdc_realn.bam 10347940267 BAM transcriptome harmonized CPTAC3 b909f2c6-a858-43e5-9005-b5b1b19d6236 cc0cde24afa50abcb9ee2e83400dfdce { 'aliquot_tag': 'ALQ_98e9e39e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00459.WGS.Nbc C3L-00459 AML WGS buccal_normal CPT0054990002 CPT0054990002.WholeGenome.RP-1303.bam 56985933744 BAM aligned CPTAC3 6536db8c-f6e6-480b-817e-4407282925a0 f0f47d316ec63e392e984ca6a5ccada9 { 'aliquot_tag': 'ALQ_6079272f', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00459.WGS.Nbc.hg38 C3L-00459 AML WGS buccal_normal CPT0054990002 d7b806ba-b895-44e0-bbad-29203621615f_wgs_gdc_realn.bam 84608866721 BAM harmonized CPTAC3 8e608d7f-19fc-4ab3-86fa-61e96ce384bb 1ee0ef5b2c29f86a6fa8a16bfa138c1e { 'aliquot_tag': 'ALQ_6079272f', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00459.WGS.Tbm C3L-00459 AML WGS tumor_bone_marrow CPT0054960002 CPT0054960002.WholeGenome.RP-1303.bam 65478911353 BAM aligned CPTAC3 fd02a2ed-221b-4fcd-b036-87dc04b552fc 7ae9c294b63086f4e143908eecda4365 { 'aliquot_tag': 'ALQ_e229b0fe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -2588,11 +3030,11 @@ C3L-00460.MethArray.Green.Tbm C3L-00460 AML Methylation Array tumor_bone_marrow C3L-00460.MethArray.Red.Tbm C3L-00460 AML Methylation Array tumor_bone_marrow CPT0054410002 202184900148_R07C01_Red.idat 13676246 IDAT Red NA CPTAC3 646990a2-b29f-4911-a566-8dd143dea98b 37886503c963d0a6471c57d69c836ce2 { 'aliquot_tag': 'ALQ_ec977f30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00460.miRNA-Seq.Tbm C3L-00460 AML miRNA-Seq tumor_bone_marrow CPT0054420002 181119_UNC31-K00269_0165_AH27WCBBXY_TCATTC_S21_L005_R1_001.unaln.bam 180642004 BAM unaligned CPTAC3 89695c8a-380c-423f-9abe-d9e4b3090f20 2702b93644d437ba3c0bbfb3934bae9b { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00460.miRNA-Seq.Tbm.hg38 C3L-00460 AML miRNA-Seq tumor_bone_marrow CPT0054420002 36ad3608-0b85-42d9-af68-65a437632a2f_mirnaseq_gdc_realn.bam 189740401 BAM harmonized CPTAC3 1ddaacb8-0ded-41c1-93f5-d5070a9f6984 447c4be6cb269a1e8b418aba1fc9baac { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00460.RNA-Seq.chimeric.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 4c0decbd-2589-4c9d-be6e-64d8213d69ca.rna_seq.chimeric.gdc_realn.bam 43422248 BAM chimeric harmonized CPTAC3 e64a866d-0b99-483d-b397-b1eb44651d6a 54fa149173a2b1f93177c80753b556be { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00460.RNA-Seq.genomic.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 4c0decbd-2589-4c9d-be6e-64d8213d69ca.rna_seq.genomic.gdc_realn.bam 9101611251 BAM genomic harmonized CPTAC3 e8b4bac6-0ea9-4a98-bd22-5545b0854f02 a67c170bf1b323593be17092ac933cfb { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00460.RNA-Seq.R1_L007.Tbm C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L007_R1_001.fastq.gz 3602480988 FASTQ R1_L007 unaligned CPTAC3 d5771179-7a98-4d85-aea4-eba182579f7f 27d1a72deef34885cf2594fec2aa37dd { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00460.RNA-Seq.R2_L007.Tbm C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L007_R2_001.fastq.gz 3932864558 FASTQ R2_L007 unaligned CPTAC3 dad7c54b-cfc7-44c4-887c-9804c31dbb37 071c5f4c748ec82aad8133fa91446e77 { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00460.RNA-Seq.transcriptome.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 4c0decbd-2589-4c9d-be6e-64d8213d69ca.rna_seq.transcriptome.gdc_realn.bam 7909912412 BAM transcriptome harmonized CPTAC3 3d53d7f2-7b1e-4e08-9128-ec57cbf2791a e3305d989f92313d42b3c1e71fb36728 { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00460.RNA-Seq.chimeric.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 1d7bdcf4-083b-4981-8e47-b8047f7084f2.rna_seq.chimeric.gdc_realn.bam 43407353 BAM chimeric harmonized CPTAC3 0d81ad10-8566-4031-a647-f5b6b2338a31 1407ccfced583853746d73e4955bb679 { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00460.RNA-Seq.genomic.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 1d7bdcf4-083b-4981-8e47-b8047f7084f2.rna_seq.genomic.gdc_realn.bam 9099967971 BAM genomic harmonized CPTAC3 b77f512e-c30a-453d-a900-8a7d2a94a45c b67cf63cc5ec9e51e27727745675ac6a { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00460.RNA-Seq.R1_L007.Tbm C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L007_R1_001.fastq.gz 3602480988 FASTQ R1_L007 unaligned CPTAC3 d5771179-7a98-4d85-aea4-eba182579f7f 27d1a72deef34885cf2594fec2aa37dd { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-00460.RNA-Seq.R2_L007.Tbm C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L007_R2_001.fastq.gz 3932864558 FASTQ R2_L007 unaligned CPTAC3 dad7c54b-cfc7-44c4-887c-9804c31dbb37 071c5f4c748ec82aad8133fa91446e77 { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-00460.RNA-Seq.transcriptome.Tbm.hg38 C3L-00460 AML RNA-Seq tumor_bone_marrow CPT0054420002 1d7bdcf4-083b-4981-8e47-b8047f7084f2.rna_seq.transcriptome.gdc_realn.bam 8799287004 BAM transcriptome harmonized CPTAC3 6d9a5057-eaa5-44f2-9a5d-5eb66c7fefb0 32e30014824a5e8583a9567eaf19e49e { 'aliquot_tag': 'ALQ_ab3705e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00460.WGS.Nbc C3L-00460 AML WGS buccal_normal CPT0054450005 CPT0054450005.WholeGenome.RP-1303.bam 90462971647 BAM aligned CPTAC3 b9909725-552a-4ce8-a7a1-7f395d1b490a a3203c6819b6f7629af112db2f5eb353 { 'aliquot_tag': 'ALQ_87734c53', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00460.WGS.Nbc.hg38 C3L-00460 AML WGS buccal_normal CPT0054450005 36a133d1-3595-458b-bee7-074e8fde8f1a_gdc_realn.bam 145024505936 BAM harmonized CPTAC3 51d9eed2-d9fc-44cd-9bc3-dbe4a78c417e 89007bb4b0a423c96ca68a3ea4f2361e { 'aliquot_tag': 'ALQ_87734c53', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00460.WGS.Tbm C3L-00460 AML WGS tumor_bone_marrow CPT0054410002 CPT0054410002.WholeGenome.RP-1303.bam 62271791506 BAM aligned CPTAC3 d6b01114-9ea3-43d5-abad-09ee9ad8b4c7 72d79e7eb3f8f56423b00b76930bf6b6 { 'aliquot_tag': 'ALQ_ec977f30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -2617,11 +3059,11 @@ C3L-00465.MethArray.Green.Tbm C3L-00465 AML Methylation Array tumor_bone_marrow C3L-00465.MethArray.Red.Tbm C3L-00465 AML Methylation Array tumor_bone_marrow CPT0055020002 202178770045_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 46fc25ef-fec8-4b16-bb7d-ee312af388a8 779108c49bbeb2792832895f633470d6 { 'aliquot_tag': 'ALQ_96d14c42', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00465.miRNA-Seq.Tbm C3L-00465 AML miRNA-Seq tumor_bone_marrow CPT0055050002 181012_UNC32-K00270_0124_AH223CBBXY_ATGTCA_S36_L004_R1_001.unaln.bam 235671604 BAM unaligned CPTAC3 d632cbcd-9f6c-46ab-b1ba-5b1640d46cf7 a6f04b061b4306f41fd717e38f0760ff { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00465.miRNA-Seq.Tbm.hg38 C3L-00465 AML miRNA-Seq tumor_bone_marrow CPT0055050002 ff44f7dc-b87c-4bdc-b53f-6504dfea6e27_mirnaseq_gdc_realn.bam 263974054 BAM harmonized CPTAC3 8d2c7576-d2dc-42f2-af38-ed35aedec990 7d3767d98aceeae461f419d02ef73af6 { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00465.RNA-Seq.chimeric.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 467e8cff-28fd-41f4-a351-132ac610d0dd.rna_seq.chimeric.gdc_realn.bam 55169368 BAM chimeric harmonized CPTAC3 bb78b535-5ca8-4b76-bbb7-14adea63ebd0 62b1fe10f51e4b19bccf8e63d92c9621 { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00465.RNA-Seq.genomic.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 467e8cff-28fd-41f4-a351-132ac610d0dd.rna_seq.genomic.gdc_realn.bam 9884996666 BAM genomic harmonized CPTAC3 d22f032e-e683-4a02-ad78-ded993bf0a4c 81ec6a2486bacfb7f3592d9318f4d60d { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00465.RNA-Seq.R1_L007.Tbm C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L007_R1_001.fastq.gz 3935574971 FASTQ R1_L007 unaligned CPTAC3 c8af9b99-a55b-454f-a8fe-1804577dc952 378ffb032b41bc82dffac57022c5a364 { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00465.RNA-Seq.R2_L007.Tbm C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L007_R2_001.fastq.gz 4372469194 FASTQ R2_L007 unaligned CPTAC3 9ed627c4-2979-4ec1-80c6-b42bf6b79455 924609ab82ee0007af3ea966a6ce9ee0 { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00465.RNA-Seq.transcriptome.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 467e8cff-28fd-41f4-a351-132ac610d0dd.rna_seq.transcriptome.gdc_realn.bam 7925520667 BAM transcriptome harmonized CPTAC3 dce95e7e-1317-4d99-87ca-3501bf28f2ae 65748d2436adea3838776198b31664e5 { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00465.RNA-Seq.chimeric.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 646df7ce-5c08-43b7-ae5d-ac0d95be4fb4.rna_seq.chimeric.gdc_realn.bam 55156691 BAM chimeric harmonized CPTAC3 9060661b-2d53-405e-bf85-e86b9b818d0f b15e8fc5beb50c97c80632469be90d59 { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00465.RNA-Seq.genomic.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 646df7ce-5c08-43b7-ae5d-ac0d95be4fb4.rna_seq.genomic.gdc_realn.bam 9886467188 BAM genomic harmonized CPTAC3 493b0c87-f3f4-47d2-a001-68e4714ba78e b02c677c740bd8cffa6bddc71618173c { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00465.RNA-Seq.R1_L007.Tbm C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L007_R1_001.fastq.gz 3935574971 FASTQ R1_L007 unaligned CPTAC3 c8af9b99-a55b-454f-a8fe-1804577dc952 378ffb032b41bc82dffac57022c5a364 { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-00465.RNA-Seq.R2_L007.Tbm C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L007_R2_001.fastq.gz 4372469194 FASTQ R2_L007 unaligned CPTAC3 9ed627c4-2979-4ec1-80c6-b42bf6b79455 924609ab82ee0007af3ea966a6ce9ee0 { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-00465.RNA-Seq.transcriptome.Tbm.hg38 C3L-00465 AML RNA-Seq tumor_bone_marrow CPT0055050002 646df7ce-5c08-43b7-ae5d-ac0d95be4fb4.rna_seq.transcriptome.gdc_realn.bam 8917954549 BAM transcriptome harmonized CPTAC3 fe495860-df5c-4714-9af8-0ca843a63c23 b37beead8fd7b088cabbc1e2a30c3360 { 'aliquot_tag': 'ALQ_24f19052', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00465.WGS.Nbc C3L-00465 AML WGS buccal_normal CPT0055070005 CPT0055070005.WholeGenome.RP-1303.bam 82399325119 BAM aligned CPTAC3 2afc1b9d-df1e-4edf-9ae6-7a7810fa37e3 e93923f75c962db5e31423a7282bfd4d { 'aliquot_tag': 'ALQ_c0555691', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00465.WGS.Nbc.hg38 C3L-00465 AML WGS buccal_normal CPT0055070005 9abef38d-b25c-45ce-aafd-86137db0e665_gdc_realn.bam 123716099969 BAM harmonized CPTAC3 888bd4f0-4d76-40f5-be2b-30f4a3f60e30 9f0874cd903a23e0ad5537115dc64a65 { 'aliquot_tag': 'ALQ_c0555691', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00465.WGS.Tbm C3L-00465 AML WGS tumor_bone_marrow CPT0055020002 CPT0055020002.WholeGenome.RP-1303.bam 76742860275 BAM aligned CPTAC3 10135270-7616-4c7b-9ea0-111b8faccbb5 4837281ecd0d6ef7c86c573386ce87a6 { 'aliquot_tag': 'ALQ_96d14c42', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -2638,16 +3080,16 @@ C3L-00503.miRNA-Seq.A C3L-00503 LSCC miRNA-Seq tissue_normal CPT0083010007 18111 C3L-00503.miRNA-Seq.A.hg38 C3L-00503 LSCC miRNA-Seq tissue_normal CPT0083010007 99c65475-b1a2-45d4-a7cf-7d3d1b4a2671_mirnaseq_gdc_realn.bam 290357523 BAM harmonized CPTAC3 fb27f02c-9b46-4683-8068-7c587b77280b 3cdfb15f22087647871573073bb9d487 { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00503.miRNA-Seq.T C3L-00503 LSCC miRNA-Seq tumor CPT0082970007 181012_UNC32-K00270_0124_AH223CBBXY_TCGAAG_S20_L001_R1_001.unaln.bam 171813239 BAM unaligned CPTAC3 ef78e8d3-9ceb-4a4c-a7e0-1e2291d881ea a88df740c9af83ef9182254b37d6d9e0 { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor' } C3L-00503.miRNA-Seq.T.hg38 C3L-00503 LSCC miRNA-Seq tumor CPT0082970007 b3582bbd-11e1-44c4-842a-47b2ad632d31_mirnaseq_gdc_realn.bam 194835662 BAM harmonized CPTAC3 bd228905-c785-4856-9a71-0542be612807 d89376a16632a8c1f997baa7bf1ac8c3 { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00503.RNA-Seq.chimeric.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 5ccbdca0-d0f0-4b58-917f-6e452051cc2a.rna_seq.chimeric.gdc_realn.bam 27859339 BAM chimeric harmonized CPTAC3 07d8b045-d8b6-4798-95d9-04fe5cb05f80 dca180b85582ca42af6239ac0a98028b { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00503.RNA-Seq.chimeric.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 18b0ed3e-d42b-49ea-a2b4-40fcd2e674c5.rna_seq.chimeric.gdc_realn.bam 55139399 BAM chimeric harmonized CPTAC3 bc077d61-29ce-4250-8767-685093f2e6bf 3ded22e763068a6447e0e17c37cef53f { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00503.RNA-Seq.genomic.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 5ccbdca0-d0f0-4b58-917f-6e452051cc2a.rna_seq.genomic.gdc_realn.bam 7775448748 BAM genomic harmonized CPTAC3 8eca0a75-943d-42a6-bd5a-57dcf391a0e8 cf8de92270b2f06c366df22754ed0983 { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00503.RNA-Seq.genomic.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 18b0ed3e-d42b-49ea-a2b4-40fcd2e674c5.rna_seq.genomic.gdc_realn.bam 9602766866 BAM genomic harmonized CPTAC3 915dba62-76ea-4c12-a91a-cfb8f99a43a9 e31afdccc3ef391197468014961c29a2 { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00503.RNA-Seq.R1_L001.A C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L001_R1_001.fastq.gz 3728782598 FASTQ R1_L001 unaligned CPTAC3 fdce22ee-161a-4432-ae86-7feb24ae101a 89beabaeca5f8f8e458eec0665ef9cd8 { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00503.RNA-Seq.R1_L002.T C3L-00503 LSCC RNA-Seq tumor CPT0082970007 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3874576899 FASTQ R1_L002 unaligned CPTAC3 d417ab83-b7a3-4d1f-a449-c5ef3dd1c622 39032deb230d45feb9f1b909f5bd0fd4 { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00503.RNA-Seq.R2_L001.A C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L001_R2_001.fastq.gz 3619344215 FASTQ R2_L001 unaligned CPTAC3 6eb0643b-579d-457a-838a-81f9f2dc72b7 3b93b5ee5b591123c3206a2b2a99acd3 { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00503.RNA-Seq.R2_L002.T C3L-00503 LSCC RNA-Seq tumor CPT0082970007 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L002_R2_001.fastq.gz 4268795449 FASTQ R2_L002 unaligned CPTAC3 4cc1e5db-b9b9-4181-9e63-e1b63e9de28c b7ab28d7bf2f20160472bf5a3f7f83aa { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00503.RNA-Seq.transcriptome.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 5ccbdca0-d0f0-4b58-917f-6e452051cc2a.rna_seq.transcriptome.gdc_realn.bam 8413406565 BAM transcriptome harmonized CPTAC3 3908d673-f5b4-4d94-91db-6905efea7fca eb867aeff31438616a4de961c05077a4 { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00503.RNA-Seq.transcriptome.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 18b0ed3e-d42b-49ea-a2b4-40fcd2e674c5.rna_seq.transcriptome.gdc_realn.bam 9121945294 BAM transcriptome harmonized CPTAC3 c49bcfd4-50cb-4978-84ae-1a5432e97a9a 9de738bcaaa02f0da16e21053bb610af { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00503.RNA-Seq.chimeric.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 1394c779-c4a7-445c-b9f7-5e3ff3f01d71.rna_seq.chimeric.gdc_realn.bam 27849690 BAM chimeric harmonized CPTAC3 8ea6a1e1-f88b-4986-ab93-fa4fbe37e43c 68df87a04183a590b6300ea057cc94d9 { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00503.RNA-Seq.chimeric.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 0c55126c-9735-4d53-a785-3d5f5bcf1ee3.rna_seq.chimeric.gdc_realn.bam 55133432 BAM chimeric harmonized CPTAC3 ffe3618f-5580-40d3-af1d-69a26db75170 c034c1dc2c24209782f2dd994ad1a204 { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00503.RNA-Seq.genomic.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 1394c779-c4a7-445c-b9f7-5e3ff3f01d71.rna_seq.genomic.gdc_realn.bam 7776632564 BAM genomic harmonized CPTAC3 190aee81-b1b9-45e8-ac1c-6fc86d7b1331 4c5e32953440d002172f5a56f5d1860a { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00503.RNA-Seq.genomic.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 0c55126c-9735-4d53-a785-3d5f5bcf1ee3.rna_seq.genomic.gdc_realn.bam 9603932757 BAM genomic harmonized CPTAC3 38be4f0e-28b7-4d72-af5e-c9358f154683 65e4913dd2c42ba23e70f1a269699da7 { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00503.RNA-Seq.R1_L001.A C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L001_R1_001.fastq.gz 3728782598 FASTQ R1_L001 unaligned CPTAC3 fdce22ee-161a-4432-ae86-7feb24ae101a 89beabaeca5f8f8e458eec0665ef9cd8 { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-00503.RNA-Seq.R1_L002.T C3L-00503 LSCC RNA-Seq tumor CPT0082970007 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3874576899 FASTQ R1_L002 unaligned CPTAC3 d417ab83-b7a3-4d1f-a449-c5ef3dd1c622 39032deb230d45feb9f1b909f5bd0fd4 { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00503.RNA-Seq.R2_L001.A C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L001_R2_001.fastq.gz 3619344215 FASTQ R2_L001 unaligned CPTAC3 6eb0643b-579d-457a-838a-81f9f2dc72b7 3b93b5ee5b591123c3206a2b2a99acd3 { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-00503.RNA-Seq.R2_L002.T C3L-00503 LSCC RNA-Seq tumor CPT0082970007 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L002_R2_001.fastq.gz 4268795449 FASTQ R2_L002 unaligned CPTAC3 4cc1e5db-b9b9-4181-9e63-e1b63e9de28c b7ab28d7bf2f20160472bf5a3f7f83aa { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00503.RNA-Seq.transcriptome.A.hg38 C3L-00503 LSCC RNA-Seq tissue_normal CPT0083010007 1394c779-c4a7-445c-b9f7-5e3ff3f01d71.rna_seq.transcriptome.gdc_realn.bam 9565474829 BAM transcriptome harmonized CPTAC3 45f28a88-0173-45de-ac76-d39dc650c21f df62e49be7b5cc189ee9b428df299152 { 'aliquot_tag': 'ALQ_59cee2f6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00503.RNA-Seq.transcriptome.T.hg38 C3L-00503 LSCC RNA-Seq tumor CPT0082970007 0c55126c-9735-4d53-a785-3d5f5bcf1ee3.rna_seq.transcriptome.gdc_realn.bam 10287037669 BAM transcriptome harmonized CPTAC3 189f7ecf-ede8-46c9-b3c9-3501642a72e6 cfe5a10a385bd04dd7641d3da802b98a { 'aliquot_tag': 'ALQ_57f64d2a', 'gdc_sample_type': 'Primary Tumor' } C3L-00503.WGS.N C3L-00503 LSCC WGS blood_normal CPT0081750001 CPT0081750001.WholeGenome.RP-1303.bam 74321480641 BAM aligned CPTAC3 0667fd6a-6acf-4a08-9021-dc3eda87bede b044c4973c57e9efe0fc07d8939cc704 { 'aliquot_tag': 'ALQ_cfb7c092', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00503.WGS.N.hg38 C3L-00503 LSCC WGS blood_normal CPT0081750001 9b1d1a96-4652-4b71-961a-1159746b2e10_gdc_realn.bam 114729660774 BAM harmonized CPTAC3 a8b7beaf-0808-4e2b-99ad-4981c2fca5c7 701e74d59b43e7398f39a4c09a2d452a { 'aliquot_tag': 'ALQ_cfb7c092', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00503.WGS.T C3L-00503 LSCC WGS tumor CPT0082970010 CPT0082970010.WholeGenome.RP-1303.bam 66101775183 BAM aligned CPTAC3 9f4baf4d-a9b9-428e-b0d9-b72c5ee00c85 c29d63a82269762e45aaef59e28aabdf { 'aliquot_tag': 'ALQ_d089e9c8', 'gdc_sample_type': 'Primary Tumor' } @@ -2662,11 +3104,11 @@ C3L-00506.MethArray.Green.T C3L-00506 GBM Methylation Array tumor CPT0017560018 C3L-00506.MethArray.Red.T C3L-00506 GBM Methylation Array tumor CPT0017560018 202184990069_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 04b23542-44cf-4a79-98d7-5e5e7e5406ce c145ed8dd9af906ae4c232e783b712cb { 'aliquot_tag': 'ALQ_d987bcbd', 'gdc_sample_type': 'Primary Tumor' } C3L-00506.miRNA-Seq.T C3L-00506 GBM miRNA-Seq tumor CPT0017560020 181113_UNC31-K00269_0164_AH23NNBBXY_CATTTT_S11_L003_R1_001.unaln.bam 205712759 BAM unaligned CPTAC3 0e63b005-6cc2-49f9-aa1c-4c267f10e0a3 365c05638ecdca2220bf77a65858ca30 { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor' } C3L-00506.miRNA-Seq.T.hg38 C3L-00506 GBM miRNA-Seq tumor CPT0017560020 2a08f6a5-788d-4861-8305-128cfb21e77f_mirnaseq_gdc_realn.bam 236920582 BAM harmonized CPTAC3 380782fd-a8eb-4c04-b21f-1dfb6299cf6f a950d28497a0a5c9e2c56e70f794382a { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00506.RNA-Seq.chimeric.T.hg38 C3L-00506 GBM RNA-Seq tumor CPT0017560020 cfdf6b41-4431-404e-adec-1b8db6b87f80.rna_seq.chimeric.gdc_realn.bam 64573904 BAM chimeric harmonized CPTAC3 ae1a09e2-244b-4775-b70b-bc97d7519eb0 f84e1026da8490829711423f37da1e7e { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00506.RNA-Seq.genomic.T.hg38 C3L-00506 GBM RNA-Seq tumor CPT0017560020 cfdf6b41-4431-404e-adec-1b8db6b87f80.rna_seq.genomic.gdc_realn.bam 8788569990 BAM genomic harmonized CPTAC3 d535556d-7097-463c-b899-10b52cbf5c5b 3e855fb7a862bddbf8ebfabc150b548d { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00506.RNA-Seq.R1_L002.T C3L-00506 GBM RNA-Seq tumor CPT0017560020 170823_UNC31-K00269_0076_BHLCTFBBXX_TGACCA_S8_L002_R1_001.fastq.gz 3980671399 FASTQ R1_L002 unaligned CPTAC3 c87ff577-885e-4b58-8ae5-01c87a77337a f7326fc37e9812fe2ee501ab2453ff19 { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00506.RNA-Seq.R2_L002.T C3L-00506 GBM RNA-Seq tumor CPT0017560020 170823_UNC31-K00269_0076_BHLCTFBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4277886224 FASTQ R2_L002 unaligned CPTAC3 3f3fd006-cee8-494e-ba71-98e6134ffdff 7d93c833a64fddc4a2c03b23f2034e3c { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00506.RNA-Seq.transcriptome.T.hg38 C3L-00506 GBM RNA-Seq tumor CPT0017560020 cfdf6b41-4431-404e-adec-1b8db6b87f80.rna_seq.transcriptome.gdc_realn.bam 10149661904 BAM transcriptome harmonized CPTAC3 715d4c98-a4d4-44cb-8a75-d2d01113f172 9d41e307e60fdfdb0dac648e015c3323 { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00506.RNA-Seq.chimeric.T.hg38 C3L-00506 GBM RNA-Seq tumor CPT0017560020 40cc7340-94f8-4781-9161-db8b60ebec59.rna_seq.chimeric.gdc_realn.bam 64551714 BAM chimeric harmonized CPTAC3 eec47748-dd76-4bb7-9a13-e67ed76bc861 6197a00556d3754856f32edacf631203 { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00506.RNA-Seq.genomic.T.hg38 C3L-00506 GBM RNA-Seq tumor CPT0017560020 40cc7340-94f8-4781-9161-db8b60ebec59.rna_seq.genomic.gdc_realn.bam 8790012373 BAM genomic harmonized CPTAC3 0f3999e9-0ebc-4584-8ed3-5afc775f2819 78df32516dfa79bbd0943de7bddf8a77 { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00506.RNA-Seq.R1_L002.T C3L-00506 GBM RNA-Seq tumor CPT0017560020 170823_UNC31-K00269_0076_BHLCTFBBXX_TGACCA_S8_L002_R1_001.fastq.gz 3980671399 FASTQ R1_L002 unaligned CPTAC3 c87ff577-885e-4b58-8ae5-01c87a77337a f7326fc37e9812fe2ee501ab2453ff19 { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00506.RNA-Seq.R2_L002.T C3L-00506 GBM RNA-Seq tumor CPT0017560020 170823_UNC31-K00269_0076_BHLCTFBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4277886224 FASTQ R2_L002 unaligned CPTAC3 3f3fd006-cee8-494e-ba71-98e6134ffdff 7d93c833a64fddc4a2c03b23f2034e3c { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00506.RNA-Seq.transcriptome.T.hg38 C3L-00506 GBM RNA-Seq tumor CPT0017560020 40cc7340-94f8-4781-9161-db8b60ebec59.rna_seq.transcriptome.gdc_realn.bam 11441265912 BAM transcriptome harmonized CPTAC3 b614a925-8b1e-4703-b6e5-a46470626e38 a6534da4e66ffdaaabc899d6808673ba { 'aliquot_tag': 'ALQ_fc71674c', 'gdc_sample_type': 'Primary Tumor' } C3L-00506.WGS.N C3L-00506 GBM WGS blood_normal CPT0015370002 CPT0015370002.WholeGenome.RP-1303.bam 70587283650 BAM aligned CPTAC3 2016b89d-ce79-4c3f-a79e-c2a37ba26f0a f26e4481d9f0998bf66d97318436a302 { 'aliquot_tag': 'ALQ_5cefbf66', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00506.WGS.N.hg38 C3L-00506 GBM WGS blood_normal CPT0015370002 7caabded-768a-4faf-b164-e646657c0a08_gdc_realn.bam 111357006675 BAM harmonized CPTAC3 eccb55ab-88b8-404d-bd51-a31496496a73 a255d9b9ea9e67e9b3f87992484212ab { 'aliquot_tag': 'ALQ_5cefbf66', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00506.WGS.T C3L-00506 GBM WGS tumor CPT0017560018 CPT0017560018.WholeGenome.RP-1303.bam 80445712855 BAM aligned CPTAC3 9f5fbbda-8782-40c7-902c-1f014e55ac91 8aacf9abaa00152453c9f8e3b16167ca { 'aliquot_tag': 'ALQ_d987bcbd', 'gdc_sample_type': 'Primary Tumor' } @@ -2685,12 +3127,12 @@ C3L-00510.miRNA-Seq.T C3L-00510 LUAD miRNA-Seq tumor CPT0011910014 180924_UNC31- C3L-00510.miRNA-Seq.T.hg38 C3L-00510 LUAD miRNA-Seq tumor CPT0011910014 4ceda2f2-f727-4a1f-8adb-415fcc72cf77_mirnaseq_gdc_realn.bam 274000358 BAM harmonized CPTAC3 b9e883cb-d1d9-44ae-acf5-6d8fea09fabf 951cdb9b1843873234866d13f016cc84 { 'aliquot_tag': 'ALQ_7603d9c7', 'gdc_sample_type': 'Primary Tumor' } C3L-00510.RNA-Seq.chimeric.A.hg38 C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 17e5b97a-3642-4ce6-b5bb-f05728e13c53.rna_seq.chimeric.gdc_realn.bam 134699087 BAM chimeric harmonized CPTAC3 e15b954f-cd66-4f93-824f-193b5eb3aae4 40cc30efa0a61c315f34339e0a90afdc { 'aliquot_tag': 'ALQ_fbd6daca', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00510.RNA-Seq.chimeric.T.hg38 C3L-00510 LUAD RNA-Seq tumor CPT0011910014 7e3a4a04-345b-4c37-aac2-6198710efe7b.rna_seq.chimeric.gdc_realn.bam 48580010 BAM chimeric harmonized CPTAC3 d8045c48-181f-4a6f-b259-20fb48797068 f2626f87b4fbea73aeaec285d7bc5d1a { 'aliquot_tag': 'ALQ_7603d9c7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00510.RNA-Seq.genomic.A.hg38 C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 17e5b97a-3642-4ce6-b5bb-f05728e13c53.rna_seq.genomic.gdc_realn.bam 7142644479 BAM genomic harmonized CPTAC3 6627c285-c6fc-43bd-94b4-0b2955038a5c ae6366f7d5a25c2d13435fd1af5f11ff { 'aliquot_tag': 'ALQ_fbd6daca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00510.RNA-Seq.genomic.T.hg38 C3L-00510 LUAD RNA-Seq tumor CPT0011910014 7e3a4a04-345b-4c37-aac2-6198710efe7b.rna_seq.genomic.gdc_realn.bam 7658600162 BAM genomic harmonized CPTAC3 793f1296-f8a0-4230-92cf-86375d0201c1 4935bab3d235911edfe676780189bff8 { 'aliquot_tag': 'ALQ_7603d9c7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00510.RNA-Seq.R1_L001.T C3L-00510 LUAD RNA-Seq tumor CPT0011910014 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTGAT_S2_L001_R1_001.fastq.gz 3775735399 FASTQ R1_L001 unaligned CPTAC3 3c707e3d-ecc0-4eb2-9041-0d7049f7051d 908163235aaa9f53d3bab3ca40f53da3 { 'aliquot_tag': 'ALQ_7603d9c7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00510.RNA-Seq.R1_L002.A C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L002_R1_001.fastq.gz 3384513131 FASTQ R1_L002 unaligned CPTAC3 03153020-a522-499f-b21c-8f591e4deac1 c6976d5f53715f7e2b048c26ee8ab5f8 { 'aliquot_tag': 'ALQ_fbd6daca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00510.RNA-Seq.R2_L001.T C3L-00510 LUAD RNA-Seq tumor CPT0011910014 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTGAT_S2_L001_R2_001.fastq.gz 4003271781 FASTQ R2_L001 unaligned CPTAC3 a47c1f9b-609e-4918-a421-2c0f025238f7 0aced7941cc0f05cc0a437609d04cc81 { 'aliquot_tag': 'ALQ_7603d9c7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00510.RNA-Seq.R2_L002.A C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L002_R2_001.fastq.gz 3690033007 FASTQ R2_L002 unaligned CPTAC3 bfd181a1-c5f3-40d6-946f-584b4640650a a8c2e98e7b3e2d1143e59a9e425dd1f7 { 'aliquot_tag': 'ALQ_fbd6daca', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00510.RNA-Seq.genomic.A.hg38 C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 17e5b97a-3642-4ce6-b5bb-f05728e13c53.rna_seq.genomic.gdc_realn.bam 7142644479 BAM genomic harmonized CPTAC3 9d609eb1-ae04-4f60-8048-aae0e3d0063b ae6366f7d5a25c2d13435fd1af5f11ff { 'aliquot_tag': 'ALQ_fbd6daca', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00510.RNA-Seq.genomic.T.hg38 C3L-00510 LUAD RNA-Seq tumor CPT0011910014 7e3a4a04-345b-4c37-aac2-6198710efe7b.rna_seq.genomic.gdc_realn.bam 7658600162 BAM genomic harmonized CPTAC3 61e388dc-d8f4-419b-a322-4b42cf00ddb9 4935bab3d235911edfe676780189bff8 { 'aliquot_tag': 'ALQ_7603d9c7', 'gdc_sample_type': 'Primary Tumor' } +C3L-00510.RNA-Seq.R1_L001.T C3L-00510 LUAD RNA-Seq tumor CPT0011910014 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTGAT_S2_L001_R1_001.fastq.gz 3775735399 FASTQ R1_L001 unaligned CPTAC3 3c707e3d-ecc0-4eb2-9041-0d7049f7051d 908163235aaa9f53d3bab3ca40f53da3 { 'aliquot_tag': 'ALQ_7603d9c7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00510.RNA-Seq.R1_L002.A C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L002_R1_001.fastq.gz 3384513131 FASTQ R1_L002 unaligned CPTAC3 03153020-a522-499f-b21c-8f591e4deac1 c6976d5f53715f7e2b048c26ee8ab5f8 { 'aliquot_tag': 'ALQ_fbd6daca', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-00510.RNA-Seq.R2_L001.T C3L-00510 LUAD RNA-Seq tumor CPT0011910014 170823_UNC31-K00269_0076_BHLCTFBBXX_ACTGAT_S2_L001_R2_001.fastq.gz 4003271781 FASTQ R2_L001 unaligned CPTAC3 a47c1f9b-609e-4918-a421-2c0f025238f7 0aced7941cc0f05cc0a437609d04cc81 { 'aliquot_tag': 'ALQ_7603d9c7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00510.RNA-Seq.R2_L002.A C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L002_R2_001.fastq.gz 3690033007 FASTQ R2_L002 unaligned CPTAC3 bfd181a1-c5f3-40d6-946f-584b4640650a a8c2e98e7b3e2d1143e59a9e425dd1f7 { 'aliquot_tag': 'ALQ_fbd6daca', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } C3L-00510.RNA-Seq.transcriptome.A.hg38 C3L-00510 LUAD RNA-Seq tissue_normal CPT0011930006 17e5b97a-3642-4ce6-b5bb-f05728e13c53.rna_seq.transcriptome.gdc_realn.bam 8863331752 BAM transcriptome harmonized CPTAC3 e1d26824-f324-43df-b4bd-98edaa4d6d68 1e646bdc453dd548d2fd4b1bb5923d9e { 'aliquot_tag': 'ALQ_fbd6daca', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00510.RNA-Seq.transcriptome.T.hg38 C3L-00510 LUAD RNA-Seq tumor CPT0011910014 7e3a4a04-345b-4c37-aac2-6198710efe7b.rna_seq.transcriptome.gdc_realn.bam 8999938425 BAM transcriptome harmonized CPTAC3 a87d08d4-d1ea-4068-a003-aaa3337836be aa198475277f85902e0e97996a36338a { 'aliquot_tag': 'ALQ_7603d9c7', 'gdc_sample_type': 'Primary Tumor' } C3L-00510.WGS.A C3L-00510 LUAD WGS tissue_normal CPT0011930009 CPT0011930009.WholeGenome.RP-1303.bam 55555268188 BAM aligned CPTAC3 0f850a83-9853-463e-b9b9-446ddb348621 50f29aca0ca87deee5889fa1c6b924b3 { 'aliquot_tag': 'ALQ_6b69c75b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2709,11 +3151,11 @@ C3L-00528.MethArray.Green.T C3L-00528 GBM Methylation Array tumor CPT0017670007 C3L-00528.MethArray.Red.T C3L-00528 GBM Methylation Array tumor CPT0017670007 202184990063_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 bd6d6b05-7260-47f0-a7cb-4445dc387c2e d876a6fa7212b063d7f1062fddb0f0e7 { 'aliquot_tag': 'ALQ_ebd7cb73', 'gdc_sample_type': 'Primary Tumor' } C3L-00528.miRNA-Seq.T C3L-00528 GBM miRNA-Seq tumor CPT0017670010 181113_UNC31-K00269_0164_AH23NNBBXY_GTCCGC_S42_L002_R1_001.unaln.bam 263379773 BAM unaligned CPTAC3 11dba221-2cf0-4381-ab63-d655a85e2cf5 1992ea6f93ed115c1d9756956bbe2690 { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor' } C3L-00528.miRNA-Seq.T.hg38 C3L-00528 GBM miRNA-Seq tumor CPT0017670010 97fa3ca1-5dc7-4fec-9bfc-4781ef0a780d_mirnaseq_gdc_realn.bam 294050293 BAM harmonized CPTAC3 4f2be8fc-bdd0-4417-bcef-08e2a1570a46 66576ad3d9819dbad73c1f930f6bd7a4 { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor' } -C3L-00528.RNA-Seq.chimeric.T.hg38 C3L-00528 GBM RNA-Seq tumor CPT0017670010 526b2ee3-ba82-40af-a3b4-0bd355d2337c.rna_seq.chimeric.gdc_realn.bam 116650700 BAM chimeric harmonized CPTAC3 5870fcda-afc8-4937-b8af-e5c65b59f911 9d4a7c72b65de9e0c16816504f6c09e5 { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor' } -C3L-00528.RNA-Seq.genomic.T.hg38 C3L-00528 GBM RNA-Seq tumor CPT0017670010 526b2ee3-ba82-40af-a3b4-0bd355d2337c.rna_seq.genomic.gdc_realn.bam 8119736545 BAM genomic harmonized CPTAC3 9071c3c0-22b4-4d0c-ba9d-d23e4f2cffed 973b60c000c02999028d8d67aeb054c1 { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor' } -C3L-00528.RNA-Seq.R1_L002.T C3L-00528 GBM RNA-Seq tumor CPT0017670010 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L002_R1_001.fastq.gz 3888668776 FASTQ R1_L002 unaligned CPTAC3 09588a09-bf91-4c35-977b-bc7d02d7de13 c00f2b3d0f500956a1202ecae8ffd1a6 { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor' } -C3L-00528.RNA-Seq.R2_L002.T C3L-00528 GBM RNA-Seq tumor CPT0017670010 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L002_R2_001.fastq.gz 4258505619 FASTQ R2_L002 unaligned CPTAC3 7b3935ea-c2e1-4ebe-8839-772b6d131fea 44d69e087bf6218b59bc06fefa8ba9c5 { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor' } -C3L-00528.RNA-Seq.transcriptome.T.hg38 C3L-00528 GBM RNA-Seq tumor CPT0017670010 526b2ee3-ba82-40af-a3b4-0bd355d2337c.rna_seq.transcriptome.gdc_realn.bam 7635735882 BAM transcriptome harmonized CPTAC3 fd8c7752-b00c-4dc4-b19c-b15040bcab7e 7d1f09e4d7739c6f0d13a055c2dad1c5 { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor' } +C3L-00528.RNA-Seq.chimeric.T.hg38 C3L-00528 GBM RNA-Seq tumor CPT0017670010 6990cffe-2a72-4cd4-ab4d-ee20c3746c30.rna_seq.chimeric.gdc_realn.bam 116627419 BAM chimeric harmonized CPTAC3 3b10ad07-3c3c-451c-833b-0cc0f5d0893f 6216b951a02513cf49775bb6751dcac0 { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor' } +C3L-00528.RNA-Seq.genomic.T.hg38 C3L-00528 GBM RNA-Seq tumor CPT0017670010 6990cffe-2a72-4cd4-ab4d-ee20c3746c30.rna_seq.genomic.gdc_realn.bam 8120578526 BAM genomic harmonized CPTAC3 dc8bc9cf-a816-45d4-a36f-694568771b90 05bd2fb5f0c170d6b15838e6c306d96c { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor' } +C3L-00528.RNA-Seq.R1_L002.T C3L-00528 GBM RNA-Seq tumor CPT0017670010 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L002_R1_001.fastq.gz 3888668776 FASTQ R1_L002 unaligned CPTAC3 09588a09-bf91-4c35-977b-bc7d02d7de13 c00f2b3d0f500956a1202ecae8ffd1a6 { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00528.RNA-Seq.R2_L002.T C3L-00528 GBM RNA-Seq tumor CPT0017670010 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L002_R2_001.fastq.gz 4258505619 FASTQ R2_L002 unaligned CPTAC3 7b3935ea-c2e1-4ebe-8839-772b6d131fea 44d69e087bf6218b59bc06fefa8ba9c5 { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00528.RNA-Seq.transcriptome.T.hg38 C3L-00528 GBM RNA-Seq tumor CPT0017670010 6990cffe-2a72-4cd4-ab4d-ee20c3746c30.rna_seq.transcriptome.gdc_realn.bam 8869448960 BAM transcriptome harmonized CPTAC3 964c9b11-9521-4f6c-8810-d655c8e294a4 884101f9fa50c91ebc8ffd5047d2920a { 'aliquot_tag': 'ALQ_6ca86f91', 'gdc_sample_type': 'Primary Tumor' } C3L-00528.WGS.N C3L-00528 GBM WGS blood_normal CPT0015500002 CPT0015500002.WholeGenome.RP-1303.bam 68493639722 BAM aligned CPTAC3 95158903-a80e-444d-b870-960a3d5205a6 170a3a16a85b300a2152b7ed55f4e8dc { 'aliquot_tag': 'ALQ_3896806b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00528.WGS.N.hg38 C3L-00528 GBM WGS blood_normal CPT0015500002 19d40ca7-57bd-4396-990b-08df765b0ea5_gdc_realn.bam 107915085965 BAM harmonized CPTAC3 cd82f611-4074-4cef-be9e-78dc06a720fc 47d89ae7f4f058b078c418d12b42e41e { 'aliquot_tag': 'ALQ_3896806b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00528.WGS.T C3L-00528 GBM WGS tumor CPT0017670007 CPT0017670007.WholeGenome.RP-1303.bam 76517587193 BAM aligned CPTAC3 ec64c90b-342a-417e-abe2-4d00b472362b 8407ffb3929a787df38e12a2df5ede24 { 'aliquot_tag': 'ALQ_ebd7cb73', 'gdc_sample_type': 'Primary Tumor' } @@ -2726,11 +3168,11 @@ C3L-00540.MethArray.Green.Tpb C3L-00540 AML Methylation Array tumor_peripheral_b C3L-00540.MethArray.Red.Tpb C3L-00540 AML Methylation Array tumor_peripheral_blood CPT0100710002 203561450073_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 33fe8b6c-3189-47bb-a451-bbd771af5f3f 8cd52e7acdb994155f4c036140b3c2e9 { 'aliquot_tag': 'ALQ_c1d733aa', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00540.miRNA-Seq.Tpb C3L-00540 AML miRNA-Seq tumor_peripheral_blood CPT0100720002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTAGAG_S17_L001_R1_001.unaln.bam 160283483 BAM unaligned CPTAC3 c17bc6d5-2127-401d-8b53-f1b3f2a13d00 2d15c543bc106fced059886415887022 { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00540.miRNA-Seq.Tpb.hg38 C3L-00540 AML miRNA-Seq tumor_peripheral_blood CPT0100720002 2c428451-78bd-4dc5-9ea6-309e8635838b_mirnaseq_gdc_realn.bam 180745404 BAM harmonized CPTAC3 27e21ccd-54f9-4487-bf6d-c1d9932efb40 a03bce595bafd85f81a52cde31fa62e6 { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00540.RNA-Seq.chimeric.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 efbf05f3-ce0f-4971-9a09-b0d7113d3d3a.rna_seq.chimeric.gdc_realn.bam 19364111 BAM chimeric harmonized CPTAC3 92bf5410-1269-49ba-ba0c-e78800df590c 224e302c1ffb27a770291460fd467390 { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00540.RNA-Seq.genomic.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 efbf05f3-ce0f-4971-9a09-b0d7113d3d3a.rna_seq.genomic.gdc_realn.bam 18799451612 BAM genomic harmonized CPTAC3 8ffdf381-d99c-46ea-bf61-957aafa37e95 07fccf4cb30faf145ef0ccc14c5d1ce4 { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00540.RNA-Seq.R1_L006.Tpb C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 190522_UNC31-K00269_0217_AH7F5MBBXY_TAATACAG-ATATTCAC_S36_L006_R1_001.fastq.gz 4580057381 FASTQ R1_L006 unaligned CPTAC3 41832e8e-3b03-4d30-9712-f64608fcbc7d ca3f2a03f31ced8dd5b08c0af9b3fe55 { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00540.RNA-Seq.R2_L006.Tpb C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 190522_UNC31-K00269_0217_AH7F5MBBXY_TAATACAG-ATATTCAC_S36_L006_R2_001.fastq.gz 5231080146 FASTQ R2_L006 unaligned CPTAC3 132a48bf-35fb-44f6-b5c3-e3ca27975431 bbf27a139ae0d3a05f6ce52332b53b56 { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00540.RNA-Seq.transcriptome.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 efbf05f3-ce0f-4971-9a09-b0d7113d3d3a.rna_seq.transcriptome.gdc_realn.bam 8359205175 BAM transcriptome harmonized CPTAC3 f073ead7-1b62-4404-b141-c231043a7bed 8f9727255a129cb74480ab97e123c14b { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00540.RNA-Seq.chimeric.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 b4a43a03-d32d-4858-8378-ca0ffc47f8b7.rna_seq.chimeric.gdc_realn.bam 19356422 BAM chimeric harmonized CPTAC3 bebfd95a-2c70-4a97-bfa2-1d69eb4380a8 8591fd90f61aacd265bd743d357d0da4 { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00540.RNA-Seq.genomic.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 b4a43a03-d32d-4858-8378-ca0ffc47f8b7.rna_seq.genomic.gdc_realn.bam 18800119622 BAM genomic harmonized CPTAC3 deab4d03-2e34-4813-8b83-371814281496 b9bdb9fd6c7955a4e906976b19d2ec0c { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00540.RNA-Seq.R1_L006.Tpb C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 190522_UNC31-K00269_0217_AH7F5MBBXY_TAATACAG-ATATTCAC_S36_L006_R1_001.fastq.gz 4580057381 FASTQ R1_L006 unaligned CPTAC3 41832e8e-3b03-4d30-9712-f64608fcbc7d ca3f2a03f31ced8dd5b08c0af9b3fe55 { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L006' } +C3L-00540.RNA-Seq.R2_L006.Tpb C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 190522_UNC31-K00269_0217_AH7F5MBBXY_TAATACAG-ATATTCAC_S36_L006_R2_001.fastq.gz 5231080146 FASTQ R2_L006 unaligned CPTAC3 132a48bf-35fb-44f6-b5c3-e3ca27975431 bbf27a139ae0d3a05f6ce52332b53b56 { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L006' } +C3L-00540.RNA-Seq.transcriptome.Tpb.hg38 C3L-00540 AML RNA-Seq tumor_peripheral_blood CPT0100720002 b4a43a03-d32d-4858-8378-ca0ffc47f8b7.rna_seq.transcriptome.gdc_realn.bam 8988812424 BAM transcriptome harmonized CPTAC3 bcbf0136-93a9-44fe-a0dd-fb22b0995789 ba730093c6247f8cd0b7062fa8cb0a21 { 'aliquot_tag': 'ALQ_8677497a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00540.WGS.Tpb C3L-00540 AML WGS tumor_peripheral_blood CPT0100710002 CPT0100710002.WholeGenome.RP-1303.bam 24415754014 BAM aligned CPTAC3 927912f8-65b3-4c01-a1f9-6352e835c5f0 ca59651a3efb3ed8d85899900d370851 { 'aliquot_tag': 'ALQ_c1d733aa', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00540.WGS.Tpb.hg38 C3L-00540 AML WGS tumor_peripheral_blood CPT0100710002 3b978803-576d-458a-8e00-13b5e8935843_wgs_gdc_realn.bam 34323783240 BAM harmonized CPTAC3 6016e946-78ca-4212-b063-bc3a8556f11b e256fb3c89709c597b5eb90bf802c510 { 'aliquot_tag': 'ALQ_c1d733aa', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00540.WXS.Nbc C3L-00540 AML WXS buccal_normal CPT0100630003 CPT0100630003.WholeExome.RP-1303.bam 16868710548 BAM aligned CPTAC3 181d72d8-36f3-40ae-8408-7f6e0b5efd18 b6fae0edeeac9d30ece4110c4bdd1870 { 'aliquot_tag': 'ALQ_74c83f9', 'gdc_sample_type': 'Buccal Cell Normal' } @@ -2745,12 +3187,12 @@ C3L-00561.miRNA-Seq.T C3L-00561 CCRCC miRNA-Seq tumor CPT0023350009 181012_UNC32 C3L-00561.miRNA-Seq.T.hg38 C3L-00561 CCRCC miRNA-Seq tumor CPT0023350009 da873fe0-1299-471c-9020-c61bd9b507dd_mirnaseq_gdc_realn.bam 200454944 BAM harmonized CPTAC3 07a0ae4d-ea22-4879-a010-3605fa3c7f7f 11949b57e842c347001845945ae1f260 { 'aliquot_tag': 'ALQ_5ca20757', 'gdc_sample_type': 'Primary Tumor' } C3L-00561.RNA-Seq.chimeric.A.hg38 C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 85fd2f59-4a1f-4d2b-8957-c6e2705f326b.rna_seq.chimeric.gdc_realn.bam 64741239 BAM chimeric harmonized CPTAC3 d291e3a8-e7e1-441e-947a-4ec27cadec6c b8ee9a0e30cfc3b2d1f868e45e0d28c1 { 'aliquot_tag': 'ALQ_8bbd6016', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00561.RNA-Seq.chimeric.T.hg38 C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 e29a7b73-5f63-45f2-993b-57766f0bd38a.rna_seq.chimeric.gdc_realn.bam 123801852 BAM chimeric harmonized CPTAC3 44c95e41-f49c-46dd-bab2-5e177164b2be 57aa2c81e55248fba47cdc1245ec2ad2 { 'aliquot_tag': 'ALQ_5ca20757', 'gdc_sample_type': 'Primary Tumor' } -C3L-00561.RNA-Seq.genomic.A.hg38 C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 85fd2f59-4a1f-4d2b-8957-c6e2705f326b.rna_seq.genomic.gdc_realn.bam 6796733061 BAM genomic harmonized CPTAC3 eaf7cc42-47f6-48c9-8185-76689e651912 6b5f87edce1a6696edbe8c6459cc60af { 'aliquot_tag': 'ALQ_8bbd6016', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00561.RNA-Seq.genomic.T.hg38 C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 e29a7b73-5f63-45f2-993b-57766f0bd38a.rna_seq.genomic.gdc_realn.bam 7758350409 BAM genomic harmonized CPTAC3 a66cb74e-b3ce-4f0f-bafb-dfe055654872 7a0b24d455c200c5b92e7f79d3b0f35b { 'aliquot_tag': 'ALQ_5ca20757', 'gdc_sample_type': 'Primary Tumor' } -C3L-00561.RNA-Seq.R1_L006.A C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L006_R1_001.fastq.gz 3268340762 FASTQ R1_L006 unaligned CPTAC3 a3b123c4-9bdf-44b7-86b9-018ce64c95bb f5d04d063edde8bf5afc6fb9e030008a { 'aliquot_tag': 'ALQ_8bbd6016', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00561.RNA-Seq.R1_L007.T C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L007_R1_001.fastq.gz 4208571272 FASTQ R1_L007 unaligned CPTAC3 35c6b8a4-6a15-4e50-9dab-da1c77c77c74 5b4571cb31d8e1f3d58826b348cc03ca { 'aliquot_tag': 'ALQ_5ca20757', 'gdc_sample_type': 'Primary Tumor' } -C3L-00561.RNA-Seq.R2_L006.A C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L006_R2_001.fastq.gz 3686578827 FASTQ R2_L006 unaligned CPTAC3 1a515eb3-e212-43d9-8bd4-89e3c259bf3a d40ac1112c80cbb189d650768a82d929 { 'aliquot_tag': 'ALQ_8bbd6016', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00561.RNA-Seq.R2_L007.T C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L007_R2_001.fastq.gz 4515097532 FASTQ R2_L007 unaligned CPTAC3 cf3c559c-9edf-464a-984b-14d4977ccfe5 bb0f5c6431281e22093fe58eca15971e { 'aliquot_tag': 'ALQ_5ca20757', 'gdc_sample_type': 'Primary Tumor' } +C3L-00561.RNA-Seq.genomic.A.hg38 C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 85fd2f59-4a1f-4d2b-8957-c6e2705f326b.rna_seq.genomic.gdc_realn.bam 6796733061 BAM genomic harmonized CPTAC3 3f107234-dc11-4e96-ab7c-07af9204b58c 6b5f87edce1a6696edbe8c6459cc60af { 'aliquot_tag': 'ALQ_8bbd6016', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00561.RNA-Seq.genomic.T.hg38 C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 e29a7b73-5f63-45f2-993b-57766f0bd38a.rna_seq.genomic.gdc_realn.bam 7758350409 BAM genomic harmonized CPTAC3 947fbc52-5128-471f-b4e4-b243b1f7b92a 7a0b24d455c200c5b92e7f79d3b0f35b { 'aliquot_tag': 'ALQ_5ca20757', 'gdc_sample_type': 'Primary Tumor' } +C3L-00561.RNA-Seq.R1_L006.A C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L006_R1_001.fastq.gz 3268340762 FASTQ R1_L006 unaligned CPTAC3 a3b123c4-9bdf-44b7-86b9-018ce64c95bb f5d04d063edde8bf5afc6fb9e030008a { 'aliquot_tag': 'ALQ_8bbd6016', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-00561.RNA-Seq.R1_L007.T C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L007_R1_001.fastq.gz 4208571272 FASTQ R1_L007 unaligned CPTAC3 35c6b8a4-6a15-4e50-9dab-da1c77c77c74 5b4571cb31d8e1f3d58826b348cc03ca { 'aliquot_tag': 'ALQ_5ca20757', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00561.RNA-Seq.R2_L006.A C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L006_R2_001.fastq.gz 3686578827 FASTQ R2_L006 unaligned CPTAC3 1a515eb3-e212-43d9-8bd4-89e3c259bf3a d40ac1112c80cbb189d650768a82d929 { 'aliquot_tag': 'ALQ_8bbd6016', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-00561.RNA-Seq.R2_L007.T C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L007_R2_001.fastq.gz 4515097532 FASTQ R2_L007 unaligned CPTAC3 cf3c559c-9edf-464a-984b-14d4977ccfe5 bb0f5c6431281e22093fe58eca15971e { 'aliquot_tag': 'ALQ_5ca20757', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-00561.RNA-Seq.transcriptome.A.hg38 C3L-00561 CCRCC RNA-Seq tissue_normal CPT0023360006 85fd2f59-4a1f-4d2b-8957-c6e2705f326b.rna_seq.transcriptome.gdc_realn.bam 8335079307 BAM transcriptome harmonized CPTAC3 e4657a9e-70c1-44ac-8fbe-46915b3808c2 e798e7405455d6bf9c131b83abb1aeba { 'aliquot_tag': 'ALQ_8bbd6016', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00561.RNA-Seq.transcriptome.T.hg38 C3L-00561 CCRCC RNA-Seq tumor CPT0023350009 e29a7b73-5f63-45f2-993b-57766f0bd38a.rna_seq.transcriptome.gdc_realn.bam 11606147516 BAM transcriptome harmonized CPTAC3 1e587d74-506e-4c84-a0fa-67442580fff7 b0957fd7750031629048e0a4340d9d54 { 'aliquot_tag': 'ALQ_5ca20757', 'gdc_sample_type': 'Primary Tumor' } C3L-00561.WGS.A C3L-00561 CCRCC WGS tissue_normal CPT0023360009 CPT0023360009.WholeGenome.RP-1303.bam 55449726555 BAM aligned CPTAC3 ef4150b5-203a-4eeb-b181-fc68cbc07714 0c7772c8c0524ec928e6f21c6970baec { 'aliquot_tag': 'ALQ_1b027d87', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2770,12 +3212,15 @@ C3L-00563.MethArray.Red.T C3L-00563 UCEC Methylation Array tumor CPT0063250009 2 C3L-00563.miRNA-Seq.T C3L-00563 UCEC miRNA-Seq tumor CPT0063250006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATGTCA_S16_L003_R1_001.unaln.bam 231283210 BAM unaligned CPTAC3 827f6a12-1cf5-4cd1-a7b8-d3f89ee207d5 d5c47f139f72f8d6af5a507f93fb2544 { 'aliquot_tag': 'ALQ_830bc799', 'gdc_sample_type': 'Primary Tumor' } C3L-00563.miRNA-Seq.T.hg38 C3L-00563 UCEC miRNA-Seq tumor CPT0063250006 5bf7c495-ea4a-47fc-8de1-f5692ef9e25d_mirnaseq_gdc_realn.bam 254741872 BAM harmonized CPTAC3 a53fc6c7-56a1-45b6-9e40-4446042cedbb aaf8a80e04d872c5251d088906e91ea5 { 'aliquot_tag': 'ALQ_830bc799', 'gdc_sample_type': 'Primary Tumor' } C3L-00563.RNA-Seq.chimeric.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0063250006 f1bfbced-7b76-4cba-98d5-59d02ebb1a52.rna_seq.chimeric.gdc_realn.bam 33591624 BAM chimeric harmonized CPTAC3 48d674db-e9bb-4fd0-82e6-55647a1c58eb 42761b6ce036ae8185edea3ef7543501 { 'aliquot_tag': 'ALQ_830bc799', 'gdc_sample_type': 'Primary Tumor' } -C3L-00563.RNA-Seq.genomic.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0063250006 f1bfbced-7b76-4cba-98d5-59d02ebb1a52.rna_seq.genomic.gdc_realn.bam 9578391817 BAM genomic harmonized CPTAC3 206908a1-e83f-4f83-877a-26b04fe9920f ca99b4f200e8be4a0a80cae5b02215c9 { 'aliquot_tag': 'ALQ_830bc799', 'gdc_sample_type': 'Primary Tumor' } -C3L-00563.RNA-Seq.R1_L002.T C3L-00563 UCEC RNA-Seq tumor CPT0063250006 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L002_R1_001.fastq.gz 4620585758 FASTQ R1_L002 unaligned CPTAC3 8b076b0a-e1a0-4215-ab01-2aa7e0a0d947 881f23dce41beb2fad34eb3e77d7a032 { 'aliquot_tag': 'ALQ_830bc799', 'gdc_sample_type': 'Primary Tumor' } -C3L-00563.RNA-Seq.R1_.T C3L-00563 UCEC RNA-Seq tumor CPT0349700001 20210729_P3_B2_WB7988-Plate3_S14_R1_001.fastq.gz 6381253574 FASTQ R1_ unaligned CPTAC3 fecefe79-a533-43c0-b94b-876fcc3a85d9 81ccaafbab86f7a848461e09c4557b02 { 'aliquot_tag': 'ALQ_5a9a280f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00563.RNA-Seq.R2_L002.T C3L-00563 UCEC RNA-Seq tumor CPT0063250006 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4894573355 FASTQ R2_L002 unaligned CPTAC3 9c892a88-3d18-4757-8c0c-ae75966102c7 62a29338ac7805962ae73a94c7b29a72 { 'aliquot_tag': 'ALQ_830bc799', 'gdc_sample_type': 'Primary Tumor' } -C3L-00563.RNA-Seq.R2_.T C3L-00563 UCEC RNA-Seq tumor CPT0349700001 20210729_P3_B2_WB7988-Plate3_S14_R2_001.fastq.gz 6502247363 FASTQ R2_ unaligned CPTAC3 01efb671-0dd5-48a9-9deb-54713c876e19 6aaa05f572f1a551cc8228afe0a3e83b { 'aliquot_tag': 'ALQ_5a9a280f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00563.RNA-Seq.chimeric.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0349700001 b9a5de02-bff2-4304-9359-4c2fb7ddb006.rna_seq.chimeric.gdc_realn.bam 288454715 BAM chimeric harmonized CPTAC3 b8f7920b-6b31-46ba-b5c6-df90676c0a66 3e7889f020a367fa88d9cb82eeccd63d { 'aliquot_tag': 'ALQ_5a9a280f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00563.RNA-Seq.genomic.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0063250006 f1bfbced-7b76-4cba-98d5-59d02ebb1a52.rna_seq.genomic.gdc_realn.bam 9578391817 BAM genomic harmonized CPTAC3 8f691e22-deb4-4e9e-ad1b-6654b9e5be17 ca99b4f200e8be4a0a80cae5b02215c9 { 'aliquot_tag': 'ALQ_830bc799', 'gdc_sample_type': 'Primary Tumor' } +C3L-00563.RNA-Seq.genomic.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0349700001 b9a5de02-bff2-4304-9359-4c2fb7ddb006.rna_seq.genomic.gdc_realn.bam 10763665344 BAM genomic harmonized CPTAC3 214f3768-2ea5-45ee-b754-8380e36c49f5 22485f5319509772a89accd39f4eb7cd { 'aliquot_tag': 'ALQ_5a9a280f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00563.RNA-Seq.R1_L002.T C3L-00563 UCEC RNA-Seq tumor CPT0063250006 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L002_R1_001.fastq.gz 4620585758 FASTQ R1_L002 unaligned CPTAC3 8b076b0a-e1a0-4215-ab01-2aa7e0a0d947 881f23dce41beb2fad34eb3e77d7a032 { 'aliquot_tag': 'ALQ_830bc799', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00563.RNA-Seq.R2_L002.T C3L-00563 UCEC RNA-Seq tumor CPT0063250006 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4894573355 FASTQ R2_L002 unaligned CPTAC3 9c892a88-3d18-4757-8c0c-ae75966102c7 62a29338ac7805962ae73a94c7b29a72 { 'aliquot_tag': 'ALQ_830bc799', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00563.RNA-Seq.T C3L-00563 UCEC RNA-Seq tumor CPT0349700001 20210729_P3_B2_WB7988-Plate3_S14_R1_001.fastq.gz 6381253574 FASTQ unaligned CPTAC3 fecefe79-a533-43c0-b94b-876fcc3a85d9 81ccaafbab86f7a848461e09c4557b02 +C3L-00563.RNA-Seq.T C3L-00563 UCEC RNA-Seq tumor CPT0349700001 20210729_P3_B2_WB7988-Plate3_S14_R2_001.fastq.gz 6502247363 FASTQ unaligned CPTAC3 01efb671-0dd5-48a9-9deb-54713c876e19 6aaa05f572f1a551cc8228afe0a3e83b C3L-00563.RNA-Seq.transcriptome.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0063250006 f1bfbced-7b76-4cba-98d5-59d02ebb1a52.rna_seq.transcriptome.gdc_realn.bam 10986344753 BAM transcriptome harmonized CPTAC3 08a9a1cc-ab3b-4be9-8a92-ae1211a50b2e 395a1f81a3af168fbcd55a1e1acc2cfd { 'aliquot_tag': 'ALQ_830bc799', 'gdc_sample_type': 'Primary Tumor' } +C3L-00563.RNA-Seq.transcriptome.T.hg38 C3L-00563 UCEC RNA-Seq tumor CPT0349700001 b9a5de02-bff2-4304-9359-4c2fb7ddb006.rna_seq.transcriptome.gdc_realn.bam 6486101873 BAM transcriptome harmonized CPTAC3 c0c95b71-f700-4106-b2d5-5f45410877b4 074d638c8f067db1a167f6493d215a84 { 'aliquot_tag': 'ALQ_5a9a280f', 'gdc_sample_type': 'Primary Tumor' } C3L-00563.WGS.N C3L-00563 UCEC WGS blood_normal CPT0065230002 CPT0065230002.WholeGenome.RP-1303.bam 68342694247 BAM aligned CPTAC3 11a6ba88-8c79-4c97-9661-341fd024746d de9088aabfacb8543f8a4bcf797838d6 { 'aliquot_tag': 'ALQ_68f6c31a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00563.WGS.N.hg38 C3L-00563 UCEC WGS blood_normal CPT0065230002 f38738f1-ed43-4824-9c84-b23a66d122b2_gdc_realn.bam 102537189019 BAM harmonized CPTAC3 611aab51-5e8b-42a5-a07c-0f263c5b99cb 4158eb5a091433e280d999c30ce8ab34 { 'aliquot_tag': 'ALQ_68f6c31a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00563.WGS.T C3L-00563 UCEC WGS tumor CPT0063250009 CPT0063250009.WholeGenome.RP-1303.bam 69042667663 BAM aligned CPTAC3 ea8c25ae-f685-4c9d-89b0-a74524e05571 03ce3a253ecb03df2a424fe8b76f5f6b { 'aliquot_tag': 'ALQ_13b4da08', 'gdc_sample_type': 'Primary Tumor' } @@ -2788,11 +3233,11 @@ C3L-00564.MethArray.Green.T C3L-00564 SAR Methylation Array tumor CPT0023550012 C3L-00564.MethArray.Red.T C3L-00564 SAR Methylation Array tumor CPT0023550012 202184900128_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 077e8387-0ff6-4c15-a76c-ca4b3079d8b1 65454232ee57a51563e16f5fda13f876 { 'aliquot_tag': 'ALQ_4320c83', 'gdc_sample_type': 'Primary Tumor' } C3L-00564.miRNA-Seq.T C3L-00564 SAR miRNA-Seq tumor CPT0023550009 181012_UNC32-K00270_0124_AH223CBBXY_GGTAGC_S44_L005_R1_001.unaln.bam 245149214 BAM unaligned CPTAC3 c69d5c43-a996-4d54-b0a3-b7fe1c1a9729 f33e55477eed9009b6362318bf3e9e47 { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor' } C3L-00564.miRNA-Seq.T.hg38 C3L-00564 SAR miRNA-Seq tumor CPT0023550009 0115218d-3598-4e17-bf95-d1863d84027e_mirnaseq_gdc_realn.bam 272636439 BAM harmonized CPTAC3 a4cb4653-427b-43cf-8f7f-0045a1c4e7e6 2ae19821245ffd83558b3f5e0200c7eb { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00564.RNA-Seq.chimeric.T.hg38 C3L-00564 SAR RNA-Seq tumor CPT0023550009 049d5c72-5387-4cb2-8ba6-7d0f570926dc.rna_seq.chimeric.gdc_realn.bam 113172326 BAM chimeric harmonized CPTAC3 f271ad2a-7fba-43b7-81ef-6fa7ced20678 6157de06dcdd14d7046ba96c650676f1 { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00564.RNA-Seq.genomic.T.hg38 C3L-00564 SAR RNA-Seq tumor CPT0023550009 049d5c72-5387-4cb2-8ba6-7d0f570926dc.rna_seq.genomic.gdc_realn.bam 8949937488 BAM genomic harmonized CPTAC3 45cebae4-06be-45c1-a50f-6c2d5cbe3af5 887fa47207c011f9e74b1db090c69d79 { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00564.RNA-Seq.R1_L007.T C3L-00564 SAR RNA-Seq tumor CPT0023550009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L007_R1_001.fastq.gz 4446405326 FASTQ R1_L007 unaligned CPTAC3 ca605625-0441-4e99-beb6-fede014f79b0 2bc7c8029f0d3d3b0c0d08227880bdb5 { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00564.RNA-Seq.R2_L007.T C3L-00564 SAR RNA-Seq tumor CPT0023550009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L007_R2_001.fastq.gz 4758035681 FASTQ R2_L007 unaligned CPTAC3 eee79e70-7134-4f37-b588-122d951282a1 7e348c3e2f38e5b03cd2bb1055145bfd { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00564.RNA-Seq.transcriptome.T.hg38 C3L-00564 SAR RNA-Seq tumor CPT0023550009 049d5c72-5387-4cb2-8ba6-7d0f570926dc.rna_seq.transcriptome.gdc_realn.bam 11513211245 BAM transcriptome harmonized CPTAC3 12dc1497-d8f8-46a2-a6bd-b20c1f6791f3 3eb4c17c63f17d8053a093a13fec8be5 { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00564.RNA-Seq.chimeric.T.hg38 C3L-00564 SAR RNA-Seq tumor CPT0023550009 c576ac8a-c04c-47ef-96a3-b1f8dedb1265.rna_seq.chimeric.gdc_realn.bam 113121868 BAM chimeric harmonized CPTAC3 eb3e6d5e-92a6-4477-a450-9e7573f4667c fa5d1d512c55fa6aa9717f10248048c3 { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00564.RNA-Seq.genomic.T.hg38 C3L-00564 SAR RNA-Seq tumor CPT0023550009 c576ac8a-c04c-47ef-96a3-b1f8dedb1265.rna_seq.genomic.gdc_realn.bam 8950961999 BAM genomic harmonized CPTAC3 bb743eee-2c25-4db0-8cd9-64a9e2710f40 dcbeddbab4b1ea0c80c868511192aaa1 { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00564.RNA-Seq.R1_L007.T C3L-00564 SAR RNA-Seq tumor CPT0023550009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L007_R1_001.fastq.gz 4446405326 FASTQ R1_L007 unaligned CPTAC3 ca605625-0441-4e99-beb6-fede014f79b0 2bc7c8029f0d3d3b0c0d08227880bdb5 { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00564.RNA-Seq.R2_L007.T C3L-00564 SAR RNA-Seq tumor CPT0023550009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACTGAT_S18_L007_R2_001.fastq.gz 4758035681 FASTQ R2_L007 unaligned CPTAC3 eee79e70-7134-4f37-b588-122d951282a1 7e348c3e2f38e5b03cd2bb1055145bfd { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-00564.RNA-Seq.transcriptome.T.hg38 C3L-00564 SAR RNA-Seq tumor CPT0023550009 c576ac8a-c04c-47ef-96a3-b1f8dedb1265.rna_seq.transcriptome.gdc_realn.bam 12907338874 BAM transcriptome harmonized CPTAC3 f4dc1e90-8583-4d9c-8663-21920992e739 9a9580fbe384c1da062c68ff5872af79 { 'aliquot_tag': 'ALQ_8afbe44a', 'gdc_sample_type': 'Primary Tumor' } C3L-00564.WGS.N C3L-00564 SAR WGS blood_normal CPT0024580002 CPT0024580002.WholeGenome.RP-1303.bam 86430350394 BAM aligned CPTAC3 15a69264-55b4-4511-8379-a3bccd15a5c3 b671079def00544a3d84b5e074f81343 { 'aliquot_tag': 'ALQ_201ec7fd', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00564.WGS.N.hg38 C3L-00564 SAR WGS blood_normal CPT0024580002 170f510c-9b0d-402b-a926-a2c2ad7ea363_gdc_realn.bam 128549962804 BAM harmonized CPTAC3 bef1a4e4-6b79-44ae-9846-f9f5c771b385 1af9fdea9544eb3a1b74a0e1384b921d { 'aliquot_tag': 'ALQ_201ec7fd', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00564.WGS.T C3L-00564 SAR WGS tumor CPT0023550012 CPT0023550012.WholeGenome.RP-1303.bam 82073676790 BAM aligned CPTAC3 b4724fb8-6790-430e-b3eb-748dc7078902 4dfebb01a9adda420fc573512af80223 { 'aliquot_tag': 'ALQ_4320c83', 'gdc_sample_type': 'Primary Tumor' } @@ -2807,16 +3252,16 @@ C3L-00567.miRNA-Seq.A C3L-00567 SAR miRNA-Seq tissue_normal CPT0023420006 181113 C3L-00567.miRNA-Seq.A.hg38 C3L-00567 SAR miRNA-Seq tissue_normal CPT0023420006 bcbff315-fa88-40a0-9b3e-2f1e6d38cbbc_mirnaseq_gdc_realn.bam 207845992 BAM harmonized CPTAC3 3ce2cc02-bd76-422e-a0e0-57207722ad98 6c1cee4651265e27b1c8926b9376d31b { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00567.miRNA-Seq.T C3L-00567 SAR miRNA-Seq tumor CPT0023390009 181012_UNC32-K00270_0124_AH223CBBXY_ATGAGC_S46_L005_R1_001.unaln.bam 301364396 BAM unaligned CPTAC3 988f93f5-a0dd-4e1b-9f5d-789bb5888e00 6c66bc584715bdc47e82c48dfb965119 { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor' } C3L-00567.miRNA-Seq.T.hg38 C3L-00567 SAR miRNA-Seq tumor CPT0023390009 5856698e-cf59-4db3-83ba-0bde006fd6f3_mirnaseq_gdc_realn.bam 330878418 BAM harmonized CPTAC3 4761d7f9-f160-4457-ac30-de5692c9e31b e92119ebe18756861f0fd988eafacad1 { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor' } -C3L-00567.RNA-Seq.chimeric.A.hg38 C3L-00567 SAR RNA-Seq tissue_normal CPT0023420006 cceb83a3-63fa-439d-b7b4-f269e4c06cb9.rna_seq.chimeric.gdc_realn.bam 49866392 BAM chimeric harmonized CPTAC3 8f34a982-9927-4e5e-82f5-f4389d1b5758 13dfca615c331141e81b9c9836248d8f { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00567.RNA-Seq.chimeric.T.hg38 C3L-00567 SAR RNA-Seq tumor CPT0023390009 428d98cf-babf-4011-8324-92d8d5a2ba3b.rna_seq.chimeric.gdc_realn.bam 74954239 BAM chimeric harmonized CPTAC3 aca846b9-a2e8-43a3-8752-686a08452d5d 5e771adebc6e8310a15ee71244260f4a { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor' } -C3L-00567.RNA-Seq.genomic.A.hg38 C3L-00567 SAR RNA-Seq tissue_normal CPT0023420006 cceb83a3-63fa-439d-b7b4-f269e4c06cb9.rna_seq.genomic.gdc_realn.bam 9102559371 BAM genomic harmonized CPTAC3 51d2444b-8e94-4c92-b529-1f5c9b6aa3b3 3616186b123456bcd09d86d4618cfae3 { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00567.RNA-Seq.genomic.T.hg38 C3L-00567 SAR RNA-Seq tumor CPT0023390009 428d98cf-babf-4011-8324-92d8d5a2ba3b.rna_seq.genomic.gdc_realn.bam 8591605515 BAM genomic harmonized CPTAC3 197c6ba0-0a14-4c91-b1d6-9a2d431aac83 e5f6a12561cd379b1436fbf2e8277f44 { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor' } -C3L-00567.RNA-Seq.R1_L006.A C3L-00567 SAR RNA-Seq tissue_normal CPT0023420006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACAGTG_S23_L006_R1_001.fastq.gz 4259444478 FASTQ R1_L006 unaligned CPTAC3 cfb5551a-cf8d-4454-b5ec-b19e393a0e47 742163408c72f573c3f834804ce00900 { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00567.RNA-Seq.R1_L008.T C3L-00567 SAR RNA-Seq tumor CPT0023390009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L008_R1_001.fastq.gz 3464542155 FASTQ R1_L008 unaligned CPTAC3 68a142c5-fa2d-416e-a78c-a92e9727b9c2 446211d860eeec1810ed9de6d15b2d92 { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor' } -C3L-00567.RNA-Seq.R2_L006.A C3L-00567 SAR RNA-Seq tissue_normal CPT0023420006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACAGTG_S23_L006_R2_001.fastq.gz 4718625388 FASTQ R2_L006 unaligned CPTAC3 2904c08e-e826-4c0b-9492-f1efec16c312 077417973109c9052d2814d53bdc7de7 { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00567.RNA-Seq.R2_L008.T C3L-00567 SAR RNA-Seq tumor CPT0023390009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L008_R2_001.fastq.gz 3811509771 FASTQ R2_L008 unaligned CPTAC3 64ed2c35-8b82-4df9-a91f-0e80db88dfa2 ddf0893a79a2a04d9bf348ef2abcb23a { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor' } -C3L-00567.RNA-Seq.transcriptome.A.hg38 C3L-00567 SAR RNA-Seq tissue_normal CPT0023420006 cceb83a3-63fa-439d-b7b4-f269e4c06cb9.rna_seq.transcriptome.gdc_realn.bam 10413213653 BAM transcriptome harmonized CPTAC3 a78c2c64-79ab-4504-86cf-22cf2cfdc402 69202050bb320e36482cfd4c2d06dfd2 { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00567.RNA-Seq.transcriptome.T.hg38 C3L-00567 SAR RNA-Seq tumor CPT0023390009 428d98cf-babf-4011-8324-92d8d5a2ba3b.rna_seq.transcriptome.gdc_realn.bam 8656083963 BAM transcriptome harmonized CPTAC3 0c3f3124-acaf-49b3-84ae-5950deee77e0 4f5e1a6cf481485300496ceef41d58a9 { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor' } +C3L-00567.RNA-Seq.chimeric.A.hg38 C3L-00567 SAR RNA-Seq tissue_normal CPT0023420006 16c3a9eb-b7b0-479b-bfc4-834d2488481a.rna_seq.chimeric.gdc_realn.bam 49855459 BAM chimeric harmonized CPTAC3 f83e0f8f-0b46-4354-9efd-4c169e6d9705 6a46a61e938979f0df5d9cc82964d985 { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00567.RNA-Seq.chimeric.T.hg38 C3L-00567 SAR RNA-Seq tumor CPT0023390009 753cd659-e42d-4e84-8b4c-02670198f63a.rna_seq.chimeric.gdc_realn.bam 74927392 BAM chimeric harmonized CPTAC3 e3d1e22c-071d-48ef-a143-02d653fa6d3b ae4c131b3ebbed19dedd7f4475fbac01 { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor' } +C3L-00567.RNA-Seq.genomic.A.hg38 C3L-00567 SAR RNA-Seq tissue_normal CPT0023420006 16c3a9eb-b7b0-479b-bfc4-834d2488481a.rna_seq.genomic.gdc_realn.bam 9103761972 BAM genomic harmonized CPTAC3 063451a9-73f6-47a9-8e93-04cf3ee9771f eb458d3f68fd38480f496f40a6ae6fb5 { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00567.RNA-Seq.genomic.T.hg38 C3L-00567 SAR RNA-Seq tumor CPT0023390009 753cd659-e42d-4e84-8b4c-02670198f63a.rna_seq.genomic.gdc_realn.bam 8593337508 BAM genomic harmonized CPTAC3 fc8e77c7-146e-487f-b0b3-46ee6f895e8e 11b19f5da97f969ece96708fe1fedaad { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor' } +C3L-00567.RNA-Seq.R1_L006.A C3L-00567 SAR RNA-Seq tissue_normal CPT0023420006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACAGTG_S23_L006_R1_001.fastq.gz 4259444478 FASTQ R1_L006 unaligned CPTAC3 cfb5551a-cf8d-4454-b5ec-b19e393a0e47 742163408c72f573c3f834804ce00900 { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-00567.RNA-Seq.R1_L008.T C3L-00567 SAR RNA-Seq tumor CPT0023390009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L008_R1_001.fastq.gz 3464542155 FASTQ R1_L008 unaligned CPTAC3 68a142c5-fa2d-416e-a78c-a92e9727b9c2 446211d860eeec1810ed9de6d15b2d92 { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00567.RNA-Seq.R2_L006.A C3L-00567 SAR RNA-Seq tissue_normal CPT0023420006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACAGTG_S23_L006_R2_001.fastq.gz 4718625388 FASTQ R2_L006 unaligned CPTAC3 2904c08e-e826-4c0b-9492-f1efec16c312 077417973109c9052d2814d53bdc7de7 { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-00567.RNA-Seq.R2_L008.T C3L-00567 SAR RNA-Seq tumor CPT0023390009 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L008_R2_001.fastq.gz 3811509771 FASTQ R2_L008 unaligned CPTAC3 64ed2c35-8b82-4df9-a91f-0e80db88dfa2 ddf0893a79a2a04d9bf348ef2abcb23a { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-00567.RNA-Seq.transcriptome.A.hg38 C3L-00567 SAR RNA-Seq tissue_normal CPT0023420006 16c3a9eb-b7b0-479b-bfc4-834d2488481a.rna_seq.transcriptome.gdc_realn.bam 11958515535 BAM transcriptome harmonized CPTAC3 47a64284-9d00-4537-88e0-1730d2f2eea8 d68ef2a7fcf0744180621cc2451e979e { 'aliquot_tag': 'ALQ_6338f66e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00567.RNA-Seq.transcriptome.T.hg38 C3L-00567 SAR RNA-Seq tumor CPT0023390009 753cd659-e42d-4e84-8b4c-02670198f63a.rna_seq.transcriptome.gdc_realn.bam 9849131344 BAM transcriptome harmonized CPTAC3 52fdcdc1-3c89-4d97-94e9-7714180617d2 4e529caa9fc3bd7c31edfe99e2768816 { 'aliquot_tag': 'ALQ_9952ea56', 'gdc_sample_type': 'Primary Tumor' } C3L-00567.WGS.A C3L-00567 SAR WGS tissue_normal CPT0023420009 CPT0023420009.WholeGenome.RP-1303.bam 61081997658 BAM aligned CPTAC3 9b3c7ce8-afb3-46b9-9b1d-4ceb883431fd 8df8a6c902fd2a4776e456a2e0e44712 { 'aliquot_tag': 'ALQ_f387ebff', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00567.WGS.A.hg38 C3L-00567 SAR WGS tissue_normal CPT0023420009 ccc4bd5c-9dff-4e46-b5c0-e80309d95787_wgs_gdc_realn.bam 89466513387 BAM harmonized CPTAC3 6843081b-d7c9-452a-a1a1-adebe2189da8 5ee4616d04efff6aabcaa235da15cc35 { 'aliquot_tag': 'ALQ_f387ebff', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00567.WGS.N C3L-00567 SAR WGS blood_normal CPT0024560002 CPT0024560002.WholeGenome.RP-1303.bam 78265278053 BAM aligned CPTAC3 59aac559-707a-436a-a0ee-6a38383e05dd 6bee5160f1f07526fa66761e341cdc54 { 'aliquot_tag': 'ALQ_9f2e799c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -2840,11 +3285,11 @@ C3L-00568.miRNA-Seq.T.hg38 C3L-00568 LSCC miRNA-Seq tumor CPT0023470008 6325c528 C3L-00568.RNA-Seq.chimeric.A.hg38 C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 4db80f60-30fe-4ca2-a810-a10bb339c21a.rna_seq.chimeric.gdc_realn.bam 27407910 BAM chimeric harmonized CPTAC3 71b7c70d-ce05-4912-aefb-fbe6c5df702f 875478df05ee5304c8e4eebaddbc5c0d { 'aliquot_tag': 'ALQ_421b6b3a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00568.RNA-Seq.chimeric.T.hg38 C3L-00568 LSCC RNA-Seq tumor CPT0023470008 3ce6ef22-14fb-4b17-b27d-21894e3d06ca.rna_seq.chimeric.gdc_realn.bam 58041655 BAM chimeric harmonized CPTAC3 818715f1-43a0-4194-9328-e9b1665b7a18 0062ff6068fe03a6c057501c0042572b { 'aliquot_tag': 'ALQ_4c605419', 'gdc_sample_type': 'Primary Tumor' } C3L-00568.RNA-Seq.genomic.A.hg38 C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 4db80f60-30fe-4ca2-a810-a10bb339c21a.rna_seq.genomic.gdc_realn.bam 9430125143 BAM genomic harmonized CPTAC3 a0d2d1b1-95fe-4a10-aee6-58c222acb979 46fa876edc1e78b3a9dc328f881d6816 { 'aliquot_tag': 'ALQ_421b6b3a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00568.RNA-Seq.genomic.T.hg38 C3L-00568 LSCC RNA-Seq tumor CPT0023470008 3ce6ef22-14fb-4b17-b27d-21894e3d06ca.rna_seq.genomic.gdc_realn.bam 8397048862 BAM genomic harmonized CPTAC3 b804ad88-9332-4655-8fe9-b4ed92928c7b 099a00d93fff3b6e5958625f018ba9a2 { 'aliquot_tag': 'ALQ_4c605419', 'gdc_sample_type': 'Primary Tumor' } -C3L-00568.RNA-Seq.R1_L003.A C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 3555174352 FASTQ R1_L003 unaligned CPTAC3 71964440-fe3e-4d98-aa81-e03b1f107ef2 76794c2f107aa1eb16ba872ac0fffe92 { 'aliquot_tag': 'ALQ_421b6b3a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00568.RNA-Seq.R1_L008.T C3L-00568 LSCC RNA-Seq tumor CPT0023470008 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L008_R1_001.fastq.gz 3525236638 FASTQ R1_L008 unaligned CPTAC3 703dcfe1-5b06-436f-aa6e-95e945ee9dcc 87b722d04c56b1ed8eef9478625780d4 { 'aliquot_tag': 'ALQ_4c605419', 'gdc_sample_type': 'Primary Tumor' } -C3L-00568.RNA-Seq.R2_L003.A C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 3943839493 FASTQ R2_L003 unaligned CPTAC3 799d7ef2-c594-44cd-93c5-d2644bd53034 7113549fca3d9cf138970e6f58228e4e { 'aliquot_tag': 'ALQ_421b6b3a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00568.RNA-Seq.R2_L008.T C3L-00568 LSCC RNA-Seq tumor CPT0023470008 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L008_R2_001.fastq.gz 3776890380 FASTQ R2_L008 unaligned CPTAC3 0bbd7e2e-fdaf-4465-bfa2-a40946256805 8dee08deb306bce2cea8ad97681ba060 { 'aliquot_tag': 'ALQ_4c605419', 'gdc_sample_type': 'Primary Tumor' } +C3L-00568.RNA-Seq.genomic.T.hg38 C3L-00568 LSCC RNA-Seq tumor CPT0023470008 3ce6ef22-14fb-4b17-b27d-21894e3d06ca.rna_seq.genomic.gdc_realn.bam 8397048862 BAM genomic harmonized CPTAC3 50db6d69-1727-4ee7-9eda-666507fa16c4 099a00d93fff3b6e5958625f018ba9a2 { 'aliquot_tag': 'ALQ_4c605419', 'gdc_sample_type': 'Primary Tumor' } +C3L-00568.RNA-Seq.R1_L003.A C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 3555174352 FASTQ R1_L003 unaligned CPTAC3 71964440-fe3e-4d98-aa81-e03b1f107ef2 76794c2f107aa1eb16ba872ac0fffe92 { 'aliquot_tag': 'ALQ_421b6b3a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-00568.RNA-Seq.R1_L008.T C3L-00568 LSCC RNA-Seq tumor CPT0023470008 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L008_R1_001.fastq.gz 3525236638 FASTQ R1_L008 unaligned CPTAC3 703dcfe1-5b06-436f-aa6e-95e945ee9dcc 87b722d04c56b1ed8eef9478625780d4 { 'aliquot_tag': 'ALQ_4c605419', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00568.RNA-Seq.R2_L003.A C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 3943839493 FASTQ R2_L003 unaligned CPTAC3 799d7ef2-c594-44cd-93c5-d2644bd53034 7113549fca3d9cf138970e6f58228e4e { 'aliquot_tag': 'ALQ_421b6b3a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-00568.RNA-Seq.R2_L008.T C3L-00568 LSCC RNA-Seq tumor CPT0023470008 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L008_R2_001.fastq.gz 3776890380 FASTQ R2_L008 unaligned CPTAC3 0bbd7e2e-fdaf-4465-bfa2-a40946256805 8dee08deb306bce2cea8ad97681ba060 { 'aliquot_tag': 'ALQ_4c605419', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-00568.RNA-Seq.transcriptome.A.hg38 C3L-00568 LSCC RNA-Seq tissue_normal CPT0023500009 4db80f60-30fe-4ca2-a810-a10bb339c21a.rna_seq.transcriptome.gdc_realn.bam 9985252039 BAM transcriptome harmonized CPTAC3 230a5b13-aa7d-41a0-8c2d-271dd756dbdc 0e99a2700182e0c2df64496de782aa6e { 'aliquot_tag': 'ALQ_421b6b3a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00568.RNA-Seq.transcriptome.T.hg38 C3L-00568 LSCC RNA-Seq tumor CPT0023470008 3ce6ef22-14fb-4b17-b27d-21894e3d06ca.rna_seq.transcriptome.gdc_realn.bam 8580749282 BAM transcriptome harmonized CPTAC3 b6ffeac0-dda0-4c75-ac76-51ad91274ec9 423eeb9b141108ada0453538bc3ac3a1 { 'aliquot_tag': 'ALQ_4c605419', 'gdc_sample_type': 'Primary Tumor' } C3L-00568.WGS.A C3L-00568 LSCC WGS tissue_normal CPT0023500006 CPT0023500006.WholeGenome.RP-1303.bam 64731420005 BAM aligned CPTAC3 0b36ee5f-f074-4c5e-97f4-5f9b34419934 d928805e2ee42655312c67a50eef1658 { 'aliquot_tag': 'ALQ_d2a476ab', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2875,15 +3320,15 @@ C3L-00581.DUP_92f2afd0.miRNA-Seq.T C3L-00581 CCRCC miRNA-Seq tumor CPT0007410006 C3L-00581.DUP_92f2afd0.miRNA-Seq.T.hg38 C3L-00581 CCRCC miRNA-Seq tumor CPT0007410006 773f7ad4-601e-4cd8-b980-fc247390ce86_mirnaseq_gdc_realn.bam 290074511 BAM harmonized CPTAC3 b28e9fd3-ecdb-4710-a57e-1b6f5385d60c 315dae76d8fe64f5c44e4735222b0cd0 { 'aliquot_tag': 'DUP_92f2afd0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00581.DUP_92f2afd0.RNA-Seq.chimeric.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 2c4100ae-37e2-44aa-849c-69ee683abb1e.rna_seq.chimeric.gdc_realn.bam 30936631 BAM chimeric harmonized CPTAC3 048f9ad5-096c-4054-b514-eb8f7917fe71 2bd2382368c0583cc763a7ab045410c3 { 'aliquot_tag': 'DUP_92f2afd0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00581.DUP_92f2afd0.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 2c4100ae-37e2-44aa-849c-69ee683abb1e.rna_seq.genomic.gdc_realn.bam 7045977940 BAM genomic harmonized CPTAC3 fc731756-9681-4dd2-83d6-11c046cf6b25 02afa27eff134b26b4ce630b4d3ad106 { 'aliquot_tag': 'DUP_92f2afd0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00581.DUP_92f2afd0.RNA-Seq.R1_L008.T C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTGAACC-GCGTTGGA_S32_L008_R1_001.fastq.gz 3267825908 FASTQ R1_L008 unaligned CPTAC3 c270b0a2-869d-47f9-b418-39a5fc471781 557a9b4274b0ae876133285e1a3f7c54 { 'aliquot_tag': 'DUP_92f2afd0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00581.DUP_92f2afd0.RNA-Seq.R2_L008.T C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTGAACC-GCGTTGGA_S32_L008_R2_001.fastq.gz 3872896238 FASTQ R2_L008 unaligned CPTAC3 758ec05b-4bf7-4841-a92a-63dd823807df 8c4c721ce8b765c5e2a088b7ead00c8f { 'aliquot_tag': 'DUP_92f2afd0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00581.DUP_92f2afd0.RNA-Seq.R1_L008.T C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTGAACC-GCGTTGGA_S32_L008_R1_001.fastq.gz 3267825908 FASTQ R1_L008 unaligned CPTAC3 c270b0a2-869d-47f9-b418-39a5fc471781 557a9b4274b0ae876133285e1a3f7c54 { 'aliquot_tag': 'DUP_92f2afd0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3L-00581.DUP_92f2afd0.RNA-Seq.R2_L008.T C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTGAACC-GCGTTGGA_S32_L008_R2_001.fastq.gz 3872896238 FASTQ R2_L008 unaligned CPTAC3 758ec05b-4bf7-4841-a92a-63dd823807df 8c4c721ce8b765c5e2a088b7ead00c8f { 'aliquot_tag': 'DUP_92f2afd0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3L-00581.DUP_92f2afd0.RNA-Seq.transcriptome.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007410006 2c4100ae-37e2-44aa-849c-69ee683abb1e.rna_seq.transcriptome.gdc_realn.bam 9111468254 BAM transcriptome harmonized CPTAC3 78bddf73-79ea-421b-bd14-1dc21c30e97f 67cbd2fa2c79a836ad67b8175f3fc9d3 { 'aliquot_tag': 'DUP_92f2afd0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00581.DUP_f537cc08.miRNA-Seq.T C3L-00581 CCRCC miRNA-Seq tumor CPT0007330006 201209_UNC32-K00270_0265_AHJ55WBBXY_TCGGCA_S21_L006_R1_001.unaln.bam 240886166 BAM unaligned CPTAC3 f764d1a9-e933-45fd-9471-668e7239288d 6c892445c1e6e3efb40a0cbb0c0d37bc { 'aliquot_tag': 'DUP_f537cc08', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00581.DUP_f537cc08.miRNA-Seq.T.hg38 C3L-00581 CCRCC miRNA-Seq tumor CPT0007330006 b47317d1-3276-4937-9eef-e6ffb7da72f1_mirnaseq_gdc_realn.bam 263587127 BAM harmonized CPTAC3 7993ff5f-98f2-4f10-a36b-d332e0a737c6 db80c70e137c02209f0ed72b3b905fdd { 'aliquot_tag': 'DUP_f537cc08', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00581.DUP_f537cc08.RNA-Seq.chimeric.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 7c1231be-3ec1-43a3-9ab0-9902e00adfa9.rna_seq.chimeric.gdc_realn.bam 42820477 BAM chimeric harmonized CPTAC3 208a8192-331b-4c00-81d9-305520ae73a4 b66b351daf03540da08da09f8b90d340 { 'aliquot_tag': 'DUP_f537cc08', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00581.DUP_f537cc08.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 7c1231be-3ec1-43a3-9ab0-9902e00adfa9.rna_seq.genomic.gdc_realn.bam 8672788874 BAM genomic harmonized CPTAC3 5d83ff7c-b9df-45eb-a827-35bb3cd0f0da 7208e5c6036a925cce0f9c70e677be82 { 'aliquot_tag': 'DUP_f537cc08', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00581.DUP_f537cc08.RNA-Seq.R1_L008.T C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCTCTA-GCTCCGAC_S31_L008_R1_001.fastq.gz 4121114773 FASTQ R1_L008 unaligned CPTAC3 72c54741-3962-47fe-bd92-4f15eb675c54 5ae8594dd70dfd6ea5bd49b933afc7ce { 'aliquot_tag': 'DUP_f537cc08', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00581.DUP_f537cc08.RNA-Seq.R2_L008.T C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCTCTA-GCTCCGAC_S31_L008_R2_001.fastq.gz 4740809569 FASTQ R2_L008 unaligned CPTAC3 43b5c2c0-f3fb-4e36-bc50-a86a0f1af22f 1a7b550e7abfca70a5be2e59b83b589d { 'aliquot_tag': 'DUP_f537cc08', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00581.DUP_f537cc08.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 7c1231be-3ec1-43a3-9ab0-9902e00adfa9.rna_seq.genomic.gdc_realn.bam 8672788874 BAM genomic harmonized CPTAC3 aa457f88-fca8-4a20-b777-c7d413f2cb9f 7208e5c6036a925cce0f9c70e677be82 { 'aliquot_tag': 'DUP_f537cc08', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00581.DUP_f537cc08.RNA-Seq.R1_L008.T C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCTCTA-GCTCCGAC_S31_L008_R1_001.fastq.gz 4121114773 FASTQ R1_L008 unaligned CPTAC3 72c54741-3962-47fe-bd92-4f15eb675c54 5ae8594dd70dfd6ea5bd49b933afc7ce { 'aliquot_tag': 'DUP_f537cc08', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3L-00581.DUP_f537cc08.RNA-Seq.R2_L008.T C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCTCTA-GCTCCGAC_S31_L008_R2_001.fastq.gz 4740809569 FASTQ R2_L008 unaligned CPTAC3 43b5c2c0-f3fb-4e36-bc50-a86a0f1af22f 1a7b550e7abfca70a5be2e59b83b589d { 'aliquot_tag': 'DUP_f537cc08', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3L-00581.DUP_f537cc08.RNA-Seq.transcriptome.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007330006 7c1231be-3ec1-43a3-9ab0-9902e00adfa9.rna_seq.transcriptome.gdc_realn.bam 11562295471 BAM transcriptome harmonized CPTAC3 0f244c75-0418-4f25-8c11-e3d3d0153ea9 d609e250bbe23d581c910fdf9f91540a { 'aliquot_tag': 'DUP_f537cc08', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00581.MethArray.Green.A C3L-00581 CCRCC Methylation Array tissue_normal CPT0007470009 204930640011_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e4624fea-a14e-4105-9f04-9d4d34c2a99e 62c980742a231d69cefbfcc90d24302a { 'aliquot_tag': 'ALQ_8d0d47e1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00581.MethArray.Green.T C3L-00581 CCRCC Methylation Array tumor CPT0007320009 202184990069_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 5e73e331-8d68-4aaa-ad4c-1b3d191049e7 9d504313344a14351de6aabce08c8fa0 { 'aliquot_tag': 'ALQ_58e8f829', 'gdc_sample_type': 'Primary Tumor' } @@ -2895,12 +3340,12 @@ C3L-00581.miRNA-Seq.T C3L-00581 CCRCC miRNA-Seq tumor CPT0007320006 181012_UNC32 C3L-00581.miRNA-Seq.T.hg38 C3L-00581 CCRCC miRNA-Seq tumor CPT0007320006 49001195-cda0-4c86-bdcc-1be1769e1206_mirnaseq_gdc_realn.bam 233410776 BAM harmonized CPTAC3 2f61908d-1e05-4b73-a1aa-cdbbb5666e93 0ffde20b2ccfdbaeec64f7e9595a3d6d { 'aliquot_tag': 'ALQ_c857e5b8', 'gdc_sample_type': 'Primary Tumor' } C3L-00581.RNA-Seq.chimeric.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 bccfaeca-2948-41b8-8492-49712aa34516.rna_seq.chimeric.gdc_realn.bam 77030163 BAM chimeric harmonized CPTAC3 ad10fbea-861b-4a9d-8576-2e32f7c7462f f94b6810368ef1fb0615ac55033939e4 { 'aliquot_tag': 'ALQ_1db25a70', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00581.RNA-Seq.chimeric.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 ba75b55b-c4f7-4cfe-97d7-8adf57f646ae.rna_seq.chimeric.gdc_realn.bam 87550110 BAM chimeric harmonized CPTAC3 fec1a19b-048c-4c75-8fbc-35d8e3862d35 cf65411006538336f2f589522c612f04 { 'aliquot_tag': 'ALQ_c857e5b8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00581.RNA-Seq.genomic.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 bccfaeca-2948-41b8-8492-49712aa34516.rna_seq.genomic.gdc_realn.bam 9267981335 BAM genomic harmonized CPTAC3 d02e61d3-4372-4ade-a560-d2225f9bcb49 499a2d1b1b03115dbe09cbc05e9a1dc2 { 'aliquot_tag': 'ALQ_1db25a70', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00581.RNA-Seq.genomic.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 bccfaeca-2948-41b8-8492-49712aa34516.rna_seq.genomic.gdc_realn.bam 9267981335 BAM genomic harmonized CPTAC3 1b849705-0426-4ac2-9d4b-c35af0b9098a 499a2d1b1b03115dbe09cbc05e9a1dc2 { 'aliquot_tag': 'ALQ_1db25a70', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00581.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 ba75b55b-c4f7-4cfe-97d7-8adf57f646ae.rna_seq.genomic.gdc_realn.bam 10470128420 BAM genomic harmonized CPTAC3 61d3c350-b42d-49bc-9006-4effc1335172 4b90437522455c150a258880cf644e35 { 'aliquot_tag': 'ALQ_c857e5b8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00581.RNA-Seq.R1_L003.T C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 170823_UNC31-K00269_0075_AHLCW5BBXX_TTAGGC_S9_L003_R1_001.fastq.gz 5032213698 FASTQ R1_L003 unaligned CPTAC3 dcb8323b-2167-4006-b110-77be5dc764f2 b63a627569f61690073d8c9d4b46f9ff { 'aliquot_tag': 'ALQ_c857e5b8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00581.RNA-Seq.R1_L004.A C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTCCGC_S44_L004_R1_001.fastq.gz 4482778225 FASTQ R1_L004 unaligned CPTAC3 f761dab3-3ff1-4a49-9474-8036d27c9280 2659fecee1adbb3419bb2b1f24924b8e { 'aliquot_tag': 'ALQ_1db25a70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00581.RNA-Seq.R2_L003.T C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 170823_UNC31-K00269_0075_AHLCW5BBXX_TTAGGC_S9_L003_R2_001.fastq.gz 5480544572 FASTQ R2_L003 unaligned CPTAC3 9a5a64fa-d904-4a25-be8b-3ba527e2b306 bcba8db1fe5a531d42eb6957b6682fb4 { 'aliquot_tag': 'ALQ_c857e5b8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00581.RNA-Seq.R2_L004.A C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTCCGC_S44_L004_R2_001.fastq.gz 4732494986 FASTQ R2_L004 unaligned CPTAC3 d3811f1e-b92a-4957-8381-aff5be4e16fe 00ede637a9549119d3153c28e75d4b75 { 'aliquot_tag': 'ALQ_1db25a70', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00581.RNA-Seq.R1_L003.T C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 170823_UNC31-K00269_0075_AHLCW5BBXX_TTAGGC_S9_L003_R1_001.fastq.gz 5032213698 FASTQ R1_L003 unaligned CPTAC3 dcb8323b-2167-4006-b110-77be5dc764f2 b63a627569f61690073d8c9d4b46f9ff { 'aliquot_tag': 'ALQ_c857e5b8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00581.RNA-Seq.R1_L004.A C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTCCGC_S44_L004_R1_001.fastq.gz 4482778225 FASTQ R1_L004 unaligned CPTAC3 f761dab3-3ff1-4a49-9474-8036d27c9280 2659fecee1adbb3419bb2b1f24924b8e { 'aliquot_tag': 'ALQ_1db25a70', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00581.RNA-Seq.R2_L003.T C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 170823_UNC31-K00269_0075_AHLCW5BBXX_TTAGGC_S9_L003_R2_001.fastq.gz 5480544572 FASTQ R2_L003 unaligned CPTAC3 9a5a64fa-d904-4a25-be8b-3ba527e2b306 bcba8db1fe5a531d42eb6957b6682fb4 { 'aliquot_tag': 'ALQ_c857e5b8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00581.RNA-Seq.R2_L004.A C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTCCGC_S44_L004_R2_001.fastq.gz 4732494986 FASTQ R2_L004 unaligned CPTAC3 d3811f1e-b92a-4957-8381-aff5be4e16fe 00ede637a9549119d3153c28e75d4b75 { 'aliquot_tag': 'ALQ_1db25a70', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-00581.RNA-Seq.transcriptome.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal CPT0007470006 bccfaeca-2948-41b8-8492-49712aa34516.rna_seq.transcriptome.gdc_realn.bam 10853877875 BAM transcriptome harmonized CPTAC3 1ed4301d-d4a4-45fc-9854-025749708b12 81449eab8315f0250438c49aa4ea81c5 { 'aliquot_tag': 'ALQ_1db25a70', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00581.RNA-Seq.transcriptome.T.hg38 C3L-00581 CCRCC RNA-Seq tumor CPT0007320006 ba75b55b-c4f7-4cfe-97d7-8adf57f646ae.rna_seq.transcriptome.gdc_realn.bam 14499440378 BAM transcriptome harmonized CPTAC3 06c2c69a-b7f4-4bb2-a126-9354d98e3ead 301cfe25270522c0c1bb1d72315f1727 { 'aliquot_tag': 'ALQ_c857e5b8', 'gdc_sample_type': 'Primary Tumor' } C3L-00581.WGS.A C3L-00581 CCRCC WGS tissue_normal CPT0007470009 CPT0007470009.WholeGenome.RP-1303.bam 63419664252 BAM aligned CPTAC3 e3c15a95-5d39-48ce-97ea-b7e2d4ae593c d7657c733c4c1418e9b170cdf41c4375 { 'aliquot_tag': 'ALQ_8d0d47e1', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2930,16 +3375,16 @@ C3L-00583.DUP_6f5d741.WXS.T.hg38 C3L-00583 CCRCC WXS tumor CPT0019140009 d199a60 C3L-00583.DUP_964acad0.miRNA-Seq.T C3L-00583 CCRCC miRNA-Seq tumor CPT0019140006 200526_UNC32-K00270_0248_BHH7WFBBXY_GCCAAT_S42_L003_R1_001.unaln.bam 246108794 BAM unaligned CPTAC3 16f5c677-61be-478c-8e3e-5d658758b0b0 6e76a0a72139ccc3aa4a3fa600efbf3e { 'aliquot_tag': 'DUP_964acad0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00583.DUP_964acad0.miRNA-Seq.T.hg38 C3L-00583 CCRCC miRNA-Seq tumor CPT0019140006 9757abf8-c157-46d7-aeee-dee1c9c1f003_mirnaseq_gdc_realn.bam 275161502 BAM harmonized CPTAC3 9be2e859-6707-4097-918f-8feb8aa4cf97 621437246a1505f35d859a40a7d21473 { 'aliquot_tag': 'DUP_964acad0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00583.DUP_964acad0.RNA-Seq.chimeric.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 c877da23-ac01-4bec-83a2-fdb29aed5bed.rna_seq.chimeric.gdc_realn.bam 149458493 BAM chimeric harmonized CPTAC3 4b263828-9b49-4d95-ab22-685511f79e4f 88dc5b299aba7c7f40a3b8619a4449fc { 'aliquot_tag': 'DUP_964acad0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00583.DUP_964acad0.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 c877da23-ac01-4bec-83a2-fdb29aed5bed.rna_seq.genomic.gdc_realn.bam 8812068645 BAM genomic harmonized CPTAC3 44155604-ea05-40d7-8bd5-4013911c7a3b 7dcfb94547a6c772528c14623f724f3c { 'aliquot_tag': 'DUP_964acad0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00583.DUP_964acad0.RNA-Seq.R1_L001.T C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGTGGCA-TCCTGTAA_S4_L001_R1_001.fastq.gz 4048728879 FASTQ R1_L001 unaligned CPTAC3 7f6e3889-42d1-4447-bf21-d3f2c94ebbb6 33ea3660cb0e30f15fb30486eda4793e { 'aliquot_tag': 'DUP_964acad0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00583.DUP_964acad0.RNA-Seq.R2_L001.T C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGTGGCA-TCCTGTAA_S4_L001_R2_001.fastq.gz 4821507032 FASTQ R2_L001 unaligned CPTAC3 11afe406-9c2c-4e80-bc9e-999e5496cb66 97cb6315a4eea5078ce7b8ca4c39f198 { 'aliquot_tag': 'DUP_964acad0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00583.DUP_964acad0.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 c877da23-ac01-4bec-83a2-fdb29aed5bed.rna_seq.genomic.gdc_realn.bam 8812068645 BAM genomic harmonized CPTAC3 a1695654-9841-488f-bd5a-59b881865e6a 7dcfb94547a6c772528c14623f724f3c { 'aliquot_tag': 'DUP_964acad0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00583.DUP_964acad0.RNA-Seq.R1_L001.T C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGTGGCA-TCCTGTAA_S4_L001_R1_001.fastq.gz 4048728879 FASTQ R1_L001 unaligned CPTAC3 7f6e3889-42d1-4447-bf21-d3f2c94ebbb6 33ea3660cb0e30f15fb30486eda4793e { 'aliquot_tag': 'DUP_964acad0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3L-00583.DUP_964acad0.RNA-Seq.R2_L001.T C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGTGGCA-TCCTGTAA_S4_L001_R2_001.fastq.gz 4821507032 FASTQ R2_L001 unaligned CPTAC3 11afe406-9c2c-4e80-bc9e-999e5496cb66 97cb6315a4eea5078ce7b8ca4c39f198 { 'aliquot_tag': 'DUP_964acad0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3L-00583.DUP_964acad0.RNA-Seq.transcriptome.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019140006 c877da23-ac01-4bec-83a2-fdb29aed5bed.rna_seq.transcriptome.gdc_realn.bam 10659953048 BAM transcriptome harmonized CPTAC3 0329fde9-2871-4394-a1b3-6b11821427e3 3dca72b4bea6f4a38bd56fb698064bc7 { 'aliquot_tag': 'DUP_964acad0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00583.DUP_ab2ae360.miRNA-Seq.T C3L-00583 CCRCC miRNA-Seq tumor CPT0019150006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGATC_S40_L003_R1_001.unaln.bam 277857726 BAM unaligned CPTAC3 374be261-8f0a-4a0b-8ae2-b969a0c2b6d2 e84109a9baca5d637d042769b998d914 { 'aliquot_tag': 'DUP_ab2ae360', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00583.DUP_ab2ae360.miRNA-Seq.T.hg38 C3L-00583 CCRCC miRNA-Seq tumor CPT0019150006 8f9416f7-24c8-4625-b035-bfcdc7c5daa0_mirnaseq_gdc_realn.bam 304615087 BAM harmonized CPTAC3 63ed9909-c01e-4889-b050-d7e975578b7e 8b6edc962c879f545d5670d2a5629c6c { 'aliquot_tag': 'DUP_ab2ae360', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00583.DUP_ab2ae360.RNA-Seq.chimeric.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 8c63008b-4b01-40c1-9cde-3f4385b99380.rna_seq.chimeric.gdc_realn.bam 96418205 BAM chimeric harmonized CPTAC3 e86d067d-5f63-44c8-8cac-c4e94ac9c962 74f87ffc6829d40748ef3229d0413348 { 'aliquot_tag': 'DUP_ab2ae360', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00583.DUP_ab2ae360.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 8c63008b-4b01-40c1-9cde-3f4385b99380.rna_seq.genomic.gdc_realn.bam 7754072494 BAM genomic harmonized CPTAC3 2a24a34f-8f94-438e-9c80-122aac9d5e92 2f3a020b372a653f43fe1771850ab74e { 'aliquot_tag': 'DUP_ab2ae360', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00583.DUP_ab2ae360.RNA-Seq.R1_L001.T C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 3425522215 FASTQ R1_L001 unaligned CPTAC3 d82386c1-ec69-4e98-a2f7-c25a703e1ce5 939af7cdbcdef5a099294735758deb93 { 'aliquot_tag': 'DUP_ab2ae360', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00583.DUP_ab2ae360.RNA-Seq.R2_L001.T C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 4130070234 FASTQ R2_L001 unaligned CPTAC3 001a222e-33a9-4117-a953-f7aa168ca968 8c0691f41290dc89209c91c462b86027 { 'aliquot_tag': 'DUP_ab2ae360', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00583.DUP_ab2ae360.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 8c63008b-4b01-40c1-9cde-3f4385b99380.rna_seq.genomic.gdc_realn.bam 7754072494 BAM genomic harmonized CPTAC3 891630fd-e853-4dcc-8bb8-a68fadec7a6b 2f3a020b372a653f43fe1771850ab74e { 'aliquot_tag': 'DUP_ab2ae360', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00583.DUP_ab2ae360.RNA-Seq.R1_L001.T C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 3425522215 FASTQ R1_L001 unaligned CPTAC3 d82386c1-ec69-4e98-a2f7-c25a703e1ce5 939af7cdbcdef5a099294735758deb93 { 'aliquot_tag': 'DUP_ab2ae360', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3L-00583.DUP_ab2ae360.RNA-Seq.R2_L001.T C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 4130070234 FASTQ R2_L001 unaligned CPTAC3 001a222e-33a9-4117-a953-f7aa168ca968 8c0691f41290dc89209c91c462b86027 { 'aliquot_tag': 'DUP_ab2ae360', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3L-00583.DUP_ab2ae360.RNA-Seq.transcriptome.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019150006 8c63008b-4b01-40c1-9cde-3f4385b99380.rna_seq.transcriptome.gdc_realn.bam 9834417639 BAM transcriptome harmonized CPTAC3 742f20cc-5f72-4bea-a6b5-9f2015de4745 699a77a86db019dee2ffcbfcc721471a { 'aliquot_tag': 'DUP_ab2ae360', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00583.MethArray.Green.A C3L-00583 CCRCC Methylation Array tissue_normal CPT0019160009 204930640042_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 e89e2788-674a-42ac-a292-0ce4179eefd5 8357e3905cc4b13b1c279f7cf94b4e87 { 'aliquot_tag': 'ALQ_7c358421', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00583.MethArray.Green.T C3L-00583 CCRCC Methylation Array tumor CPT0019130006 202178770109_R01C01_Grn.idat 13676233 IDAT Green NA CPTAC3 aa57cb7a-fd7f-48cf-bed7-97aa62cd11a5 ee9a74dd1f66a6d50e00f045b0bc2f0b { 'aliquot_tag': 'ALQ_246a16c0', 'gdc_sample_type': 'Primary Tumor' } @@ -2951,12 +3396,12 @@ C3L-00583.miRNA-Seq.T C3L-00583 CCRCC miRNA-Seq tumor CPT0019130009 181012_UNC32 C3L-00583.miRNA-Seq.T.hg38 C3L-00583 CCRCC miRNA-Seq tumor CPT0019130009 4f9f39c4-3d9a-4195-b6da-062c6869ea6f_mirnaseq_gdc_realn.bam 225848387 BAM harmonized CPTAC3 fecf2330-db5c-4a44-9943-9c23f9ccb4ff a8c9f8b1bbbaacd5f57d8e2a689c1d75 { 'aliquot_tag': 'ALQ_b4d50b51', 'gdc_sample_type': 'Primary Tumor' } C3L-00583.RNA-Seq.chimeric.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 8fafe7f7-907b-41e3-acaa-34e44b7e8055.rna_seq.chimeric.gdc_realn.bam 114921560 BAM chimeric harmonized CPTAC3 8a82f76a-18bf-4bae-8530-89f6fe04a9d9 54145ddee3982281fdbbb8dfdac816cd { 'aliquot_tag': 'ALQ_ec8a99b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00583.RNA-Seq.chimeric.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 5c293c28-5fd7-4637-9b52-c80d760461e4.rna_seq.chimeric.gdc_realn.bam 131311013 BAM chimeric harmonized CPTAC3 807eca27-b105-4d9b-800b-8be148151901 72ec0e118193b466a7e2cf091ecdb718 { 'aliquot_tag': 'ALQ_b4d50b51', 'gdc_sample_type': 'Primary Tumor' } -C3L-00583.RNA-Seq.genomic.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 8fafe7f7-907b-41e3-acaa-34e44b7e8055.rna_seq.genomic.gdc_realn.bam 7261744127 BAM genomic harmonized CPTAC3 895aebe8-a331-4901-b461-cda100bf9df9 2d3ff311eb9c6d30a1de31b7dd42dac2 { 'aliquot_tag': 'ALQ_ec8a99b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00583.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 5c293c28-5fd7-4637-9b52-c80d760461e4.rna_seq.genomic.gdc_realn.bam 7589276581 BAM genomic harmonized CPTAC3 81d1e033-c928-4ab9-a1d0-3e90613666a5 3934cc22fdddc955298de417bb154529 { 'aliquot_tag': 'ALQ_b4d50b51', 'gdc_sample_type': 'Primary Tumor' } -C3L-00583.RNA-Seq.R1_L005.T C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L005_R1_001.fastq.gz 4073385982 FASTQ R1_L005 unaligned CPTAC3 3a6ea7b6-610e-4afa-9c10-d9019533a96b 520f1dce87b9651df7edad2c7c17b4eb { 'aliquot_tag': 'ALQ_b4d50b51', 'gdc_sample_type': 'Primary Tumor' } -C3L-00583.RNA-Seq.R1_L008.A C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L008_R1_001.fastq.gz 3519064040 FASTQ R1_L008 unaligned CPTAC3 5864effa-7bb3-434f-84ab-b726d8db1631 6407caaf67fd48f8a93e442e04c672a4 { 'aliquot_tag': 'ALQ_ec8a99b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00583.RNA-Seq.R2_L005.T C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L005_R2_001.fastq.gz 4392441326 FASTQ R2_L005 unaligned CPTAC3 0bb2dca8-6956-4024-ae6c-1a26c1fbf9f8 d3c9881903c1617289b4d94e3b7e6f9d { 'aliquot_tag': 'ALQ_b4d50b51', 'gdc_sample_type': 'Primary Tumor' } -C3L-00583.RNA-Seq.R2_L008.A C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L008_R2_001.fastq.gz 3934223727 FASTQ R2_L008 unaligned CPTAC3 bd0af26a-a13b-44ab-ae7d-26b25afd8513 bd92d11a61286f57347c96255d234a80 { 'aliquot_tag': 'ALQ_ec8a99b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00583.RNA-Seq.genomic.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 8fafe7f7-907b-41e3-acaa-34e44b7e8055.rna_seq.genomic.gdc_realn.bam 7261744127 BAM genomic harmonized CPTAC3 2827be6f-1597-4bb0-866c-81aea91ddd5e 2d3ff311eb9c6d30a1de31b7dd42dac2 { 'aliquot_tag': 'ALQ_ec8a99b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00583.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 5c293c28-5fd7-4637-9b52-c80d760461e4.rna_seq.genomic.gdc_realn.bam 7589276581 BAM genomic harmonized CPTAC3 95dbe33a-0639-47bb-9049-19879f488840 3934cc22fdddc955298de417bb154529 { 'aliquot_tag': 'ALQ_b4d50b51', 'gdc_sample_type': 'Primary Tumor' } +C3L-00583.RNA-Seq.R1_L005.T C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L005_R1_001.fastq.gz 4073385982 FASTQ R1_L005 unaligned CPTAC3 3a6ea7b6-610e-4afa-9c10-d9019533a96b 520f1dce87b9651df7edad2c7c17b4eb { 'aliquot_tag': 'ALQ_b4d50b51', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00583.RNA-Seq.R1_L008.A C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L008_R1_001.fastq.gz 3519064040 FASTQ R1_L008 unaligned CPTAC3 5864effa-7bb3-434f-84ab-b726d8db1631 6407caaf67fd48f8a93e442e04c672a4 { 'aliquot_tag': 'ALQ_ec8a99b0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00583.RNA-Seq.R2_L005.T C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L005_R2_001.fastq.gz 4392441326 FASTQ R2_L005 unaligned CPTAC3 0bb2dca8-6956-4024-ae6c-1a26c1fbf9f8 d3c9881903c1617289b4d94e3b7e6f9d { 'aliquot_tag': 'ALQ_b4d50b51', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-00583.RNA-Seq.R2_L008.A C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L008_R2_001.fastq.gz 3934223727 FASTQ R2_L008 unaligned CPTAC3 bd0af26a-a13b-44ab-ae7d-26b25afd8513 bd92d11a61286f57347c96255d234a80 { 'aliquot_tag': 'ALQ_ec8a99b0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00583.RNA-Seq.transcriptome.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal CPT0019160006 8fafe7f7-907b-41e3-acaa-34e44b7e8055.rna_seq.transcriptome.gdc_realn.bam 8486065405 BAM transcriptome harmonized CPTAC3 28c945cc-0059-43ff-829c-21176eddb47c 86b88dbd57f82af0eb7701dbca89af1f { 'aliquot_tag': 'ALQ_ec8a99b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00583.RNA-Seq.transcriptome.T.hg38 C3L-00583 CCRCC RNA-Seq tumor CPT0019130009 5c293c28-5fd7-4637-9b52-c80d760461e4.rna_seq.transcriptome.gdc_realn.bam 10339106718 BAM transcriptome harmonized CPTAC3 bec9103d-ed3d-4dc7-8651-8332221bd91c f2fdf8380ea79d348053bc288c6d082f { 'aliquot_tag': 'ALQ_b4d50b51', 'gdc_sample_type': 'Primary Tumor' } C3L-00583.WGS.A C3L-00583 CCRCC WGS tissue_normal CPT0019160009 CPT0019160009.WholeGenome.RP-1303.bam 76664662790 BAM aligned CPTAC3 2d7d2c03-e0a9-4020-be02-31a21d2118b7 842c1d69e581e83f778aa5158f292737 { 'aliquot_tag': 'ALQ_7c358421', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -2979,16 +3424,19 @@ C3L-00586.miRNA-Seq.T C3L-00586 UCEC miRNA-Seq tumor CPT0023630009 181113_UNC31- C3L-00586.miRNA-Seq.T.hg38 C3L-00586 UCEC miRNA-Seq tumor CPT0023630009 66c5443c-007d-42ff-9e84-68e6473416b1_mirnaseq_gdc_realn.bam 335633123 BAM harmonized CPTAC3 55f401cd-35a4-4de7-b73f-dd597cfd1b42 132dd65025fd08fdec666abb4baca5ea { 'aliquot_tag': 'ALQ_832f6344', 'gdc_sample_type': 'Primary Tumor' } C3L-00586.RNA-Seq.chimeric.A.hg38 C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 714a804d-cf2e-41a2-9763-ecf617ea3061.rna_seq.chimeric.gdc_realn.bam 168393348 BAM chimeric harmonized CPTAC3 d6a53639-3df2-48b4-8430-ac4bfa41ed01 6834b22a164047a4f0fe5eede5f5e837 { 'aliquot_tag': 'ALQ_a1b0a2c5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00586.RNA-Seq.chimeric.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0023630009 6cbe403c-5c2c-4cb7-8f8c-37424f2917a2.rna_seq.chimeric.gdc_realn.bam 103948340 BAM chimeric harmonized CPTAC3 5b44a7ab-546e-40c0-aad5-5dd4029d6845 b9a7becce210d89c78aa3eeeb7598531 { 'aliquot_tag': 'ALQ_832f6344', 'gdc_sample_type': 'Primary Tumor' } +C3L-00586.RNA-Seq.chimeric.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0349730001 3c05c010-995e-4576-a4a6-8843ecc67368.rna_seq.chimeric.gdc_realn.bam 121934112 BAM chimeric harmonized CPTAC3 dc825739-c43e-4b9a-be2c-1a8d34cb159e ab3e99a3a18e8baccfa59cd2bf858c6d { 'aliquot_tag': 'ALQ_1d3a52df', 'gdc_sample_type': 'Primary Tumor' } C3L-00586.RNA-Seq.genomic.A.hg38 C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 714a804d-cf2e-41a2-9763-ecf617ea3061.rna_seq.genomic.gdc_realn.bam 9073448496 BAM genomic harmonized CPTAC3 31baf514-c47c-4ebe-9fe3-f00b350b3193 4ec7675e89120d7c789c25fbf807a535 { 'aliquot_tag': 'ALQ_a1b0a2c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00586.RNA-Seq.genomic.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0023630009 6cbe403c-5c2c-4cb7-8f8c-37424f2917a2.rna_seq.genomic.gdc_realn.bam 11724071805 BAM genomic harmonized CPTAC3 c6660c00-e3d1-4e46-8aba-5e97b7bb63ca 85fb4266d79abae44c3135d2aa1d74e3 { 'aliquot_tag': 'ALQ_832f6344', 'gdc_sample_type': 'Primary Tumor' } -C3L-00586.RNA-Seq.R1_L002.A C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 180109_UNC31-K00269_0107_AHNHY2BBXX_GCCAAT_S7_L002_R1_001.fastq.gz 4142046687 FASTQ R1_L002 unaligned CPTAC3 52d135b5-6065-44c4-abc4-8245ce9694dd d380b254083dc3daad6ab5c8f32c91c5 { 'aliquot_tag': 'ALQ_a1b0a2c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00586.RNA-Seq.R1_L008.T C3L-00586 UCEC RNA-Seq tumor CPT0023630009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACAGTG_S23_L008_R1_001.fastq.gz 5533994865 FASTQ R1_L008 unaligned CPTAC3 20fcc809-dcdf-46c5-b40d-c1aa39c6791c 1f1a892b356db123b29f304287a4c339 { 'aliquot_tag': 'ALQ_832f6344', 'gdc_sample_type': 'Primary Tumor' } -C3L-00586.RNA-Seq.R1_.T C3L-00586 UCEC RNA-Seq tumor CPT0349730001 20210723_P2_A3_WB7988-plate2_S3_R1_001.fastq.gz 3653714781 FASTQ R1_ unaligned CPTAC3 dde1a646-97dc-4db7-9765-daffe2080a3b a26d5f1b63e9c3926b60494c67287416 { 'aliquot_tag': 'ALQ_1d3a52df', 'gdc_sample_type': 'Primary Tumor' } -C3L-00586.RNA-Seq.R2_L002.A C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 180109_UNC31-K00269_0107_AHNHY2BBXX_GCCAAT_S7_L002_R2_001.fastq.gz 4623538411 FASTQ R2_L002 unaligned CPTAC3 9509bda6-905c-4583-b31a-debc0d5afc82 55b3285d91c377c273a68685fc969b29 { 'aliquot_tag': 'ALQ_a1b0a2c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00586.RNA-Seq.R2_L008.T C3L-00586 UCEC RNA-Seq tumor CPT0023630009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACAGTG_S23_L008_R2_001.fastq.gz 5988626529 FASTQ R2_L008 unaligned CPTAC3 e731e945-44ae-4179-9672-a2a6a1fb2d94 81acbdadeb4a5aa1ae3674a58a26d710 { 'aliquot_tag': 'ALQ_832f6344', 'gdc_sample_type': 'Primary Tumor' } -C3L-00586.RNA-Seq.R2_.T C3L-00586 UCEC RNA-Seq tumor CPT0349730001 20210723_P2_A3_WB7988-plate2_S3_R2_001.fastq.gz 3775461393 FASTQ R2_ unaligned CPTAC3 8d4f92c4-9b34-48a5-ba92-c6f42ee61a11 821bda2fe423a3a5f8663065e34a05a7 { 'aliquot_tag': 'ALQ_1d3a52df', 'gdc_sample_type': 'Primary Tumor' } +C3L-00586.RNA-Seq.genomic.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0023630009 6cbe403c-5c2c-4cb7-8f8c-37424f2917a2.rna_seq.genomic.gdc_realn.bam 11724071805 BAM genomic harmonized CPTAC3 fe18b968-a91e-4eb3-bcba-8dd78c0c36d0 85fb4266d79abae44c3135d2aa1d74e3 { 'aliquot_tag': 'ALQ_832f6344', 'gdc_sample_type': 'Primary Tumor' } +C3L-00586.RNA-Seq.genomic.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0349730001 3c05c010-995e-4576-a4a6-8843ecc67368.rna_seq.genomic.gdc_realn.bam 6416251513 BAM genomic harmonized CPTAC3 28f4ad82-e1ac-4968-b9af-3bd1aeaedabd 5683010182dda572ee0e7c40e2126bb5 { 'aliquot_tag': 'ALQ_1d3a52df', 'gdc_sample_type': 'Primary Tumor' } +C3L-00586.RNA-Seq.R1_L002.A C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 180109_UNC31-K00269_0107_AHNHY2BBXX_GCCAAT_S7_L002_R1_001.fastq.gz 4142046687 FASTQ R1_L002 unaligned CPTAC3 52d135b5-6065-44c4-abc4-8245ce9694dd d380b254083dc3daad6ab5c8f32c91c5 { 'aliquot_tag': 'ALQ_a1b0a2c5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-00586.RNA-Seq.R1_L008.T C3L-00586 UCEC RNA-Seq tumor CPT0023630009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACAGTG_S23_L008_R1_001.fastq.gz 5533994865 FASTQ R1_L008 unaligned CPTAC3 20fcc809-dcdf-46c5-b40d-c1aa39c6791c 1f1a892b356db123b29f304287a4c339 { 'aliquot_tag': 'ALQ_832f6344', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00586.RNA-Seq.R2_L002.A C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 180109_UNC31-K00269_0107_AHNHY2BBXX_GCCAAT_S7_L002_R2_001.fastq.gz 4623538411 FASTQ R2_L002 unaligned CPTAC3 9509bda6-905c-4583-b31a-debc0d5afc82 55b3285d91c377c273a68685fc969b29 { 'aliquot_tag': 'ALQ_a1b0a2c5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-00586.RNA-Seq.R2_L008.T C3L-00586 UCEC RNA-Seq tumor CPT0023630009 170818_UNC32-K00270_0051_BHLCCHBBXX_ACAGTG_S23_L008_R2_001.fastq.gz 5988626529 FASTQ R2_L008 unaligned CPTAC3 e731e945-44ae-4179-9672-a2a6a1fb2d94 81acbdadeb4a5aa1ae3674a58a26d710 { 'aliquot_tag': 'ALQ_832f6344', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-00586.RNA-Seq.T C3L-00586 UCEC RNA-Seq tumor CPT0349730001 20210723_P2_A3_WB7988-plate2_S3_R1_001.fastq.gz 3653714781 FASTQ unaligned CPTAC3 dde1a646-97dc-4db7-9765-daffe2080a3b a26d5f1b63e9c3926b60494c67287416 +C3L-00586.RNA-Seq.T C3L-00586 UCEC RNA-Seq tumor CPT0349730001 20210723_P2_A3_WB7988-plate2_S3_R2_001.fastq.gz 3775461393 FASTQ unaligned CPTAC3 8d4f92c4-9b34-48a5-ba92-c6f42ee61a11 821bda2fe423a3a5f8663065e34a05a7 C3L-00586.RNA-Seq.transcriptome.A.hg38 C3L-00586 UCEC RNA-Seq tissue_normal CPT0023640006 714a804d-cf2e-41a2-9763-ecf617ea3061.rna_seq.transcriptome.gdc_realn.bam 11122359889 BAM transcriptome harmonized CPTAC3 8db5bd40-0272-44b1-89f6-e2303b3f37f2 6ff54b978098d89227e5a78917b1ff02 { 'aliquot_tag': 'ALQ_a1b0a2c5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00586.RNA-Seq.transcriptome.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0023630009 6cbe403c-5c2c-4cb7-8f8c-37424f2917a2.rna_seq.transcriptome.gdc_realn.bam 14974390499 BAM transcriptome harmonized CPTAC3 9bf7478e-be0d-4f4b-b630-ed80ed56c5ac 70fba5c453c409e4e75f8c2b65d27772 { 'aliquot_tag': 'ALQ_832f6344', 'gdc_sample_type': 'Primary Tumor' } +C3L-00586.RNA-Seq.transcriptome.T.hg38 C3L-00586 UCEC RNA-Seq tumor CPT0349730001 3c05c010-995e-4576-a4a6-8843ecc67368.rna_seq.transcriptome.gdc_realn.bam 3369515099 BAM transcriptome harmonized CPTAC3 770ab7f5-1730-4b63-bf9f-198462a38a36 f972f0ca027903947182874767a63b71 { 'aliquot_tag': 'ALQ_1d3a52df', 'gdc_sample_type': 'Primary Tumor' } C3L-00586.WGS.A C3L-00586 UCEC WGS tissue_normal CPT0023640009 CPT0023640009.WholeGenome.RP-1303.bam 50162386928 BAM aligned CPTAC3 ad055a5d-4a2d-476d-8945-6e83f747e9dc a8eabb88294b5f2ff805893f08c6d914 { 'aliquot_tag': 'ALQ_310fbf54', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00586.WGS.A.hg38 C3L-00586 UCEC WGS tissue_normal CPT0023640009 6e12c1b5-5971-498b-b545-11e58f92afb9_wgs_gdc_realn.bam 74648740747 BAM harmonized CPTAC3 9f9384d6-fd9c-474b-82bb-db9843d45ba9 8b2451a2ddd87865a42da069c1c788ba { 'aliquot_tag': 'ALQ_310fbf54', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00586.WGS.N C3L-00586 UCEC WGS blood_normal CPT0024590002 CPT0024590002.WholeGenome.RP-1303.bam 59347229383 BAM aligned CPTAC3 e6c394c5-bd99-43eb-9173-e887562dfef5 157e483d8e1e98f1316bc2ad48eb620b { 'aliquot_tag': 'ALQ_1d7eee4d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3011,12 +3459,12 @@ C3L-00589.miRNA-Seq.T C3L-00589 PDA miRNA-Seq tumor CPT0063970010 180924_UNC31-K C3L-00589.miRNA-Seq.T.hg38 C3L-00589 PDA miRNA-Seq tumor CPT0063970010 65ddf445-e8d9-4c52-8e5c-67db9f898552_mirnaseq_gdc_realn.bam 338589852 BAM harmonized CPTAC3 bda3f741-1069-4724-beeb-0157e95cea10 ef390fbce4128deebba58dc56b4b5321 { 'aliquot_tag': 'ALQ_6374f04e', 'gdc_sample_type': 'Primary Tumor' } C3L-00589.RNA-Seq.chimeric.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 5f288ded-b67d-45f9-bc13-1c901330743f.rna_seq.chimeric.gdc_realn.bam 117160477 BAM chimeric harmonized CPTAC3 0ab98563-88c6-4552-9039-d5b9fcec8b31 51536bf993dfa57169146437310b49df { 'aliquot_tag': 'ALQ_2c3cda5b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00589.RNA-Seq.chimeric.T.hg38 C3L-00589 PDA RNA-Seq tumor CPT0063970010 15f47711-9168-4f5d-b2ab-110b32747071.rna_seq.chimeric.gdc_realn.bam 30370816 BAM chimeric harmonized CPTAC3 57b40172-2518-41af-88f3-f6bca7dd0a38 8bb8f17093d93ad67409eb15f023ec6b { 'aliquot_tag': 'ALQ_6374f04e', 'gdc_sample_type': 'Primary Tumor' } -C3L-00589.RNA-Seq.genomic.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 5f288ded-b67d-45f9-bc13-1c901330743f.rna_seq.genomic.gdc_realn.bam 11076734966 BAM genomic harmonized CPTAC3 04146aec-9a88-408a-ae46-c741ce43f6ab 941d45c8bbd0b1c965875858015c366a { 'aliquot_tag': 'ALQ_2c3cda5b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00589.RNA-Seq.genomic.T.hg38 C3L-00589 PDA RNA-Seq tumor CPT0063970010 15f47711-9168-4f5d-b2ab-110b32747071.rna_seq.genomic.gdc_realn.bam 7969424398 BAM genomic harmonized CPTAC3 f692d0d9-280d-4c4f-b715-76803d2ad85c e0118a31cde7ae57ea5804e977d8ddee { 'aliquot_tag': 'ALQ_6374f04e', 'gdc_sample_type': 'Primary Tumor' } -C3L-00589.RNA-Seq.R1_L007.T C3L-00589 PDA RNA-Seq tumor CPT0063970010 170828_UNC31-K00269_0077_AHLF33BBXX_ATGTCA_S24_L007_R1_001.fastq.gz 3920592967 FASTQ R1_L007 unaligned CPTAC3 9568d5b0-fb1c-47bc-bd22-e13e816f7a8d aa64764cda2e8edd6d9fa870090b7eca { 'aliquot_tag': 'ALQ_6374f04e', 'gdc_sample_type': 'Primary Tumor' } -C3L-00589.RNA-Seq.R1_L008.A C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L008_R1_001.fastq.gz 5066238960 FASTQ R1_L008 unaligned CPTAC3 20d32d65-582a-4620-9c43-d2c7c245f584 f635942b6249b75a9667b01cf0c4dbd6 { 'aliquot_tag': 'ALQ_2c3cda5b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00589.RNA-Seq.R2_L007.T C3L-00589 PDA RNA-Seq tumor CPT0063970010 170828_UNC31-K00269_0077_AHLF33BBXX_ATGTCA_S24_L007_R2_001.fastq.gz 4141977042 FASTQ R2_L007 unaligned CPTAC3 da2c3763-55e0-4d4b-91d0-d0af716be826 6bbc74adb697094eeec86537597a25a6 { 'aliquot_tag': 'ALQ_6374f04e', 'gdc_sample_type': 'Primary Tumor' } -C3L-00589.RNA-Seq.R2_L008.A C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L008_R2_001.fastq.gz 5740435397 FASTQ R2_L008 unaligned CPTAC3 e4b1dbfa-3713-4c5e-9087-bbbcc1a51f54 5d0bdccf6ce6d88047dd5dff816a49c8 { 'aliquot_tag': 'ALQ_2c3cda5b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00589.RNA-Seq.genomic.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 5f288ded-b67d-45f9-bc13-1c901330743f.rna_seq.genomic.gdc_realn.bam 11076734966 BAM genomic harmonized CPTAC3 844b9e56-f9d2-4cad-aceb-80901eb74db8 941d45c8bbd0b1c965875858015c366a { 'aliquot_tag': 'ALQ_2c3cda5b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00589.RNA-Seq.genomic.T.hg38 C3L-00589 PDA RNA-Seq tumor CPT0063970010 15f47711-9168-4f5d-b2ab-110b32747071.rna_seq.genomic.gdc_realn.bam 7969424398 BAM genomic harmonized CPTAC3 646b57e8-9099-4970-96f3-6bb438efed46 e0118a31cde7ae57ea5804e977d8ddee { 'aliquot_tag': 'ALQ_6374f04e', 'gdc_sample_type': 'Primary Tumor' } +C3L-00589.RNA-Seq.R1_L007.T C3L-00589 PDA RNA-Seq tumor CPT0063970010 170828_UNC31-K00269_0077_AHLF33BBXX_ATGTCA_S24_L007_R1_001.fastq.gz 3920592967 FASTQ R1_L007 unaligned CPTAC3 9568d5b0-fb1c-47bc-bd22-e13e816f7a8d aa64764cda2e8edd6d9fa870090b7eca { 'aliquot_tag': 'ALQ_6374f04e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00589.RNA-Seq.R1_L008.A C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L008_R1_001.fastq.gz 5066238960 FASTQ R1_L008 unaligned CPTAC3 20d32d65-582a-4620-9c43-d2c7c245f584 f635942b6249b75a9667b01cf0c4dbd6 { 'aliquot_tag': 'ALQ_2c3cda5b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00589.RNA-Seq.R2_L007.T C3L-00589 PDA RNA-Seq tumor CPT0063970010 170828_UNC31-K00269_0077_AHLF33BBXX_ATGTCA_S24_L007_R2_001.fastq.gz 4141977042 FASTQ R2_L007 unaligned CPTAC3 da2c3763-55e0-4d4b-91d0-d0af716be826 6bbc74adb697094eeec86537597a25a6 { 'aliquot_tag': 'ALQ_6374f04e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-00589.RNA-Seq.R2_L008.A C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L008_R2_001.fastq.gz 5740435397 FASTQ R2_L008 unaligned CPTAC3 e4b1dbfa-3713-4c5e-9087-bbbcc1a51f54 5d0bdccf6ce6d88047dd5dff816a49c8 { 'aliquot_tag': 'ALQ_2c3cda5b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00589.RNA-Seq.transcriptome.A.hg38 C3L-00589 PDA RNA-Seq tissue_normal CPT0063990006 5f288ded-b67d-45f9-bc13-1c901330743f.rna_seq.transcriptome.gdc_realn.bam 12734282428 BAM transcriptome harmonized CPTAC3 8e0d9431-8e80-4b20-98ec-9df468109050 a0ff6bb2ca57373daacc797f5c83cd58 { 'aliquot_tag': 'ALQ_2c3cda5b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00589.RNA-Seq.transcriptome.T.hg38 C3L-00589 PDA RNA-Seq tumor CPT0063970010 15f47711-9168-4f5d-b2ab-110b32747071.rna_seq.transcriptome.gdc_realn.bam 11273775063 BAM transcriptome harmonized CPTAC3 32c47da8-0a84-496c-b4d9-4406b0be1964 7acadc097c55c05c75dd33688023a0d3 { 'aliquot_tag': 'ALQ_6374f04e', 'gdc_sample_type': 'Primary Tumor' } C3L-00589.Targeted.T C3L-00589 PDA Targeted Sequencing tumor CPT0063970007_1 CPT0063970007_1.CustomSelection.RP-1303.PDO-18786.bam 3329150514 BAM aligned CPTAC3 e429d415-c23f-4f61-bedc-18b5abb254ca 5643d6379852be7e6b11f629252ae5a3 { 'aliquot_tag': 'ALQ_4390d15d', 'gdc_sample_type': 'Primary Tumor' } @@ -3039,11 +3487,11 @@ C3L-00591.MethArray.Green.T C3L-00591 GBM Methylation Array tumor CPT0017810007 C3L-00591.MethArray.Red.T C3L-00591 GBM Methylation Array tumor CPT0017810007 202176300111_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 2698ecd0-c6d3-4a19-a249-0f1548b022e2 e547301bc2a0513256e5d94d866f7d74 { 'aliquot_tag': 'ALQ_5e9d5fa3', 'gdc_sample_type': 'Primary Tumor' } C3L-00591.miRNA-Seq.T C3L-00591 GBM miRNA-Seq tumor CPT0017810010 181113_UNC31-K00269_0164_AH23NNBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 307995687 BAM unaligned CPTAC3 dd35b7f0-3f19-4b02-95d7-ff095cc593f1 ee77f1f691dad0bb8ebe71e7d02c7170 { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor' } C3L-00591.miRNA-Seq.T.hg38 C3L-00591 GBM miRNA-Seq tumor CPT0017810010 2d0dc5f0-e002-430c-8540-a6b9e4277098_mirnaseq_gdc_realn.bam 341819129 BAM harmonized CPTAC3 bdd4ade9-50ca-4a54-9264-36f9d0bfa5fd 04002e8ecc278db31cad88b12746f918 { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor' } -C3L-00591.RNA-Seq.chimeric.T.hg38 C3L-00591 GBM RNA-Seq tumor CPT0017810010 116dc1ac-26e8-47b4-92aa-5c0ff0a50907.rna_seq.chimeric.gdc_realn.bam 98174857 BAM chimeric harmonized CPTAC3 7d509114-0eb9-4082-a79b-98b75595de6a e043b24095b7265422fffb5ad5962e20 { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor' } -C3L-00591.RNA-Seq.genomic.T.hg38 C3L-00591 GBM RNA-Seq tumor CPT0017810010 116dc1ac-26e8-47b4-92aa-5c0ff0a50907.rna_seq.genomic.gdc_realn.bam 8105450284 BAM genomic harmonized CPTAC3 c70a8728-fdd2-47e0-a4dc-af9bdbbfd987 b9af83f9cf1363389149bf40fc38f2f4 { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor' } -C3L-00591.RNA-Seq.R1_L004.T C3L-00591 GBM RNA-Seq tumor CPT0017810010 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L004_R1_001.fastq.gz 3754191459 FASTQ R1_L004 unaligned CPTAC3 05139df5-3a85-4380-bdc1-efbfe764d1a9 f3309072205116a88d9dcb85a33ca75c { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor' } -C3L-00591.RNA-Seq.R2_L004.T C3L-00591 GBM RNA-Seq tumor CPT0017810010 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L004_R2_001.fastq.gz 4077879362 FASTQ R2_L004 unaligned CPTAC3 eae7cd2c-46b0-448b-9666-56871463002c 0d6b384354ee5c5b43fcbdf408c9ccfb { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor' } -C3L-00591.RNA-Seq.transcriptome.T.hg38 C3L-00591 GBM RNA-Seq tumor CPT0017810010 116dc1ac-26e8-47b4-92aa-5c0ff0a50907.rna_seq.transcriptome.gdc_realn.bam 8068441363 BAM transcriptome harmonized CPTAC3 2c532a63-e72e-42ea-a83b-0d8a59ca44f2 aab00e4f6ee2475d5731afa6a9d36b45 { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor' } +C3L-00591.RNA-Seq.chimeric.T.hg38 C3L-00591 GBM RNA-Seq tumor CPT0017810010 521c21e6-c49e-4113-bb42-4b700ea5ed1a.rna_seq.chimeric.gdc_realn.bam 98137750 BAM chimeric harmonized CPTAC3 de23d55c-661a-44e2-bbfb-67a98c402e58 fee3c0c2f02cd07d712f7b9af4f6b1ee { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor' } +C3L-00591.RNA-Seq.genomic.T.hg38 C3L-00591 GBM RNA-Seq tumor CPT0017810010 521c21e6-c49e-4113-bb42-4b700ea5ed1a.rna_seq.genomic.gdc_realn.bam 8106992696 BAM genomic harmonized CPTAC3 5e3012fa-3ba4-4d7f-9b17-30d57281332e 4c903e25568e5d96026ed7572b7ad270 { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor' } +C3L-00591.RNA-Seq.R1_L004.T C3L-00591 GBM RNA-Seq tumor CPT0017810010 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L004_R1_001.fastq.gz 3754191459 FASTQ R1_L004 unaligned CPTAC3 05139df5-3a85-4380-bdc1-efbfe764d1a9 f3309072205116a88d9dcb85a33ca75c { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00591.RNA-Seq.R2_L004.T C3L-00591 GBM RNA-Seq tumor CPT0017810010 170818_UNC32-K00270_0051_BHLCCHBBXX_TGACCA_S13_L004_R2_001.fastq.gz 4077879362 FASTQ R2_L004 unaligned CPTAC3 eae7cd2c-46b0-448b-9666-56871463002c 0d6b384354ee5c5b43fcbdf408c9ccfb { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00591.RNA-Seq.transcriptome.T.hg38 C3L-00591 GBM RNA-Seq tumor CPT0017810010 521c21e6-c49e-4113-bb42-4b700ea5ed1a.rna_seq.transcriptome.gdc_realn.bam 9287683438 BAM transcriptome harmonized CPTAC3 198b2591-4b21-4878-a50b-db9b08f4ed71 f96e312073fe20ab72828de22050f379 { 'aliquot_tag': 'ALQ_d9e2fb41', 'gdc_sample_type': 'Primary Tumor' } C3L-00591.WGS.N C3L-00591 GBM WGS blood_normal CPT0015570002 CPT0015570002.WholeGenome.RP-1303.bam 98123262059 BAM aligned CPTAC3 9cd2b59e-ac01-4725-a71e-a454b7c77327 36ae87eeed4f46c1c088f738445e7b4f { 'aliquot_tag': 'ALQ_8ab65c7b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00591.WGS.N.hg38 C3L-00591 GBM WGS blood_normal CPT0015570002 3632d20f-f2f9-4939-878b-1037c915cea6_gdc_realn.bam 153973639303 BAM harmonized CPTAC3 48514219-2827-49a3-a3a2-8278595707e2 a03bc854c224f42bb1cb0d820e23b41a { 'aliquot_tag': 'ALQ_8ab65c7b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00591.WGS.T C3L-00591 GBM WGS tumor CPT0017810007 CPT0017810007.WholeGenome.RP-1303.bam 68543415344 BAM aligned CPTAC3 85ccca4b-e84a-4a0e-abab-f4db75cf4920 1d80b3d5501c4bc44f2345e2ece2aedf { 'aliquot_tag': 'ALQ_5e9d5fa3', 'gdc_sample_type': 'Primary Tumor' } @@ -3062,8 +3510,8 @@ C3L-00598.miRNA-Seq.T C3L-00598 PDA miRNA-Seq tumor CPT0019410007 181012_UNC32-K C3L-00598.miRNA-Seq.T.hg38 C3L-00598 PDA miRNA-Seq tumor CPT0019410007 dd5f8bd8-28d2-4fa0-bb1c-a1ceb26dfd16_mirnaseq_gdc_realn.bam 241100929 BAM harmonized CPTAC3 aa0de3bf-a63e-47fa-a199-f7aedd595e78 9b395544649c5638c2ef24a3f51138b2 { 'aliquot_tag': 'ALQ_7960e485', 'gdc_sample_type': 'Primary Tumor' } C3L-00598.RNA-Seq.chimeric.T.hg38 C3L-00598 PDA RNA-Seq tumor CPT0019410007 aef2534a-1cd0-479a-88b4-9f9f402fe27f.rna_seq.chimeric.gdc_realn.bam 149022815 BAM chimeric harmonized CPTAC3 2f7ac88a-ff1d-4a8c-927d-8a436bd1782d c6973a67ccbb54eda116966fbda722e1 { 'aliquot_tag': 'ALQ_7960e485', 'gdc_sample_type': 'Primary Tumor' } C3L-00598.RNA-Seq.genomic.T.hg38 C3L-00598 PDA RNA-Seq tumor CPT0019410007 aef2534a-1cd0-479a-88b4-9f9f402fe27f.rna_seq.genomic.gdc_realn.bam 8756876389 BAM genomic harmonized CPTAC3 acf7d2f3-3a7a-4939-a445-cf292d6822cf c45a25d3beb3f6479547d588b2c89e71 { 'aliquot_tag': 'ALQ_7960e485', 'gdc_sample_type': 'Primary Tumor' } -C3L-00598.RNA-Seq.R1_L005.T C3L-00598 PDA RNA-Seq tumor CPT0019410007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L005_R1_001.fastq.gz 3989517240 FASTQ R1_L005 unaligned CPTAC3 b478f334-dfb5-454c-86c3-bd69233ba106 633a83d0222cf18da91a12013650618c { 'aliquot_tag': 'ALQ_7960e485', 'gdc_sample_type': 'Primary Tumor' } -C3L-00598.RNA-Seq.R2_L005.T C3L-00598 PDA RNA-Seq tumor CPT0019410007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L005_R2_001.fastq.gz 4073723122 FASTQ R2_L005 unaligned CPTAC3 53a54935-e290-42a5-89c8-d983987b1fc3 059b3e94d876321111b7d7d071eac367 { 'aliquot_tag': 'ALQ_7960e485', 'gdc_sample_type': 'Primary Tumor' } +C3L-00598.RNA-Seq.R1_L005.T C3L-00598 PDA RNA-Seq tumor CPT0019410007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L005_R1_001.fastq.gz 3989517240 FASTQ R1_L005 unaligned CPTAC3 b478f334-dfb5-454c-86c3-bd69233ba106 633a83d0222cf18da91a12013650618c { 'aliquot_tag': 'ALQ_7960e485', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00598.RNA-Seq.R2_L005.T C3L-00598 PDA RNA-Seq tumor CPT0019410007 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L005_R2_001.fastq.gz 4073723122 FASTQ R2_L005 unaligned CPTAC3 53a54935-e290-42a5-89c8-d983987b1fc3 059b3e94d876321111b7d7d071eac367 { 'aliquot_tag': 'ALQ_7960e485', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-00598.RNA-Seq.transcriptome.T.hg38 C3L-00598 PDA RNA-Seq tumor CPT0019410007 aef2534a-1cd0-479a-88b4-9f9f402fe27f.rna_seq.transcriptome.gdc_realn.bam 10459971965 BAM transcriptome harmonized CPTAC3 b71a8aba-8323-4cf3-89c8-6333ef777bbf eecf94b05ccb03fde23a22ccd49250bf { 'aliquot_tag': 'ALQ_7960e485', 'gdc_sample_type': 'Primary Tumor' } C3L-00598.Targeted.T C3L-00598 PDA Targeted Sequencing tumor CPT0019410010_1 CPT0019410010_1.CustomSelection.RP-1303.PDO-18786.bam 5006116430 BAM aligned CPTAC3 fe200a18-cf92-48b3-a015-fb15ef6cae61 49d691358a4694ef1782fa70d2c39ae8 { 'aliquot_tag': 'ALQ_714411b1', 'gdc_sample_type': 'Primary Tumor' } C3L-00598.Targeted.T.hg38 C3L-00598 PDA Targeted Sequencing tumor CPT0019410010_1 c9763f30-8938-4c73-92a6-5e77b6085e89_targetedsequencing_gdc_realn.bam 7121502495 BAM harmonized CPTAC3 31c7d17c-43b4-494b-a69e-b058ac2e159f c686fb9ca477836c80f722b549949b9f { 'aliquot_tag': 'ALQ_714411b1', 'gdc_sample_type': 'Primary Tumor' } @@ -3078,9 +3526,9 @@ C3L-00599.MethArray.Red.T C3L-00599 PDA Methylation Array tumor CPT0081260007 20 C3L-00599.miRNA-Seq.T C3L-00599 PDA miRNA-Seq tumor CPT0081260010 181012_UNC32-K00270_0124_AH223CBBXY_CAACTA_S48_L006_R1_001.unaln.bam 271321177 BAM unaligned CPTAC3 20a1ef7f-a834-47cc-ae3d-169c44b255b9 226793fcef93be5b8dde15d858b4b217 { 'aliquot_tag': 'ALQ_b6c62a26', 'gdc_sample_type': 'Primary Tumor' } C3L-00599.miRNA-Seq.T.hg38 C3L-00599 PDA miRNA-Seq tumor CPT0081260010 ed4847ac-5fc9-4b1d-81bb-b798ce90451a_mirnaseq_gdc_realn.bam 298462902 BAM harmonized CPTAC3 1db9c07f-db5c-4576-9343-e1b51aeafe00 34282c71c83ab78d260836d30794ddb3 { 'aliquot_tag': 'ALQ_b6c62a26', 'gdc_sample_type': 'Primary Tumor' } C3L-00599.RNA-Seq.chimeric.T.hg38 C3L-00599 PDA RNA-Seq tumor CPT0081260010 a6c2fdb2-4a59-451b-9c06-bb1ac70bb625.rna_seq.chimeric.gdc_realn.bam 44165885 BAM chimeric harmonized CPTAC3 db3f8e3e-0c30-4800-bd24-7ea7c62b4c28 76ea7903175e79712240279b0063c844 { 'aliquot_tag': 'ALQ_b6c62a26', 'gdc_sample_type': 'Primary Tumor' } -C3L-00599.RNA-Seq.genomic.T.hg38 C3L-00599 PDA RNA-Seq tumor CPT0081260010 a6c2fdb2-4a59-451b-9c06-bb1ac70bb625.rna_seq.genomic.gdc_realn.bam 9799687205 BAM genomic harmonized CPTAC3 26ca1bd7-284a-4e59-9374-c95327df0abd fb759cc0f8e29e90dfd24e28ddc360e4 { 'aliquot_tag': 'ALQ_b6c62a26', 'gdc_sample_type': 'Primary Tumor' } -C3L-00599.RNA-Seq.R1_L001.T C3L-00599 PDA RNA-Seq tumor CPT0081260010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L001_R1_001.fastq.gz 3985199647 FASTQ R1_L001 unaligned CPTAC3 1670ad87-2708-4ed6-998a-782e7b346522 8ada48b6960e0e7ddf8f9e33d8705724 { 'aliquot_tag': 'ALQ_b6c62a26', 'gdc_sample_type': 'Primary Tumor' } -C3L-00599.RNA-Seq.R2_L001.T C3L-00599 PDA RNA-Seq tumor CPT0081260010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L001_R2_001.fastq.gz 3906051021 FASTQ R2_L001 unaligned CPTAC3 fe9a475f-851e-4d88-be9e-cf0ef2922c26 6a8d0943dae3931916b9d96153b0a965 { 'aliquot_tag': 'ALQ_b6c62a26', 'gdc_sample_type': 'Primary Tumor' } +C3L-00599.RNA-Seq.genomic.T.hg38 C3L-00599 PDA RNA-Seq tumor CPT0081260010 a6c2fdb2-4a59-451b-9c06-bb1ac70bb625.rna_seq.genomic.gdc_realn.bam 9799687205 BAM genomic harmonized CPTAC3 ae55d6c0-8741-4174-a264-8c5cf58be624 fb759cc0f8e29e90dfd24e28ddc360e4 { 'aliquot_tag': 'ALQ_b6c62a26', 'gdc_sample_type': 'Primary Tumor' } +C3L-00599.RNA-Seq.R1_L001.T C3L-00599 PDA RNA-Seq tumor CPT0081260010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L001_R1_001.fastq.gz 3985199647 FASTQ R1_L001 unaligned CPTAC3 1670ad87-2708-4ed6-998a-782e7b346522 8ada48b6960e0e7ddf8f9e33d8705724 { 'aliquot_tag': 'ALQ_b6c62a26', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00599.RNA-Seq.R2_L001.T C3L-00599 PDA RNA-Seq tumor CPT0081260010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L001_R2_001.fastq.gz 3906051021 FASTQ R2_L001 unaligned CPTAC3 fe9a475f-851e-4d88-be9e-cf0ef2922c26 6a8d0943dae3931916b9d96153b0a965 { 'aliquot_tag': 'ALQ_b6c62a26', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-00599.RNA-Seq.transcriptome.T.hg38 C3L-00599 PDA RNA-Seq tumor CPT0081260010 a6c2fdb2-4a59-451b-9c06-bb1ac70bb625.rna_seq.transcriptome.gdc_realn.bam 9831050625 BAM transcriptome harmonized CPTAC3 a7688bd4-e8e6-4195-91f9-3ea5bf837f71 d9abef8f784d6885cce0384407c44d72 { 'aliquot_tag': 'ALQ_b6c62a26', 'gdc_sample_type': 'Primary Tumor' } C3L-00599.Targeted.T C3L-00599 PDA Targeted Sequencing tumor CPT0081260007_1 CPT0081260007_1.CustomSelection.RP-1303.PDO-18786.bam 4218438220 BAM aligned CPTAC3 4df464fc-bc8c-425a-949b-9b58fe143232 b2db3fbd382174d3cb180d7be6e322af { 'aliquot_tag': 'ALQ_88b2de8a', 'gdc_sample_type': 'Primary Tumor' } C3L-00599.Targeted.T.hg38 C3L-00599 PDA Targeted Sequencing tumor CPT0081260007_1 4c871aba-34a3-4b82-b9b7-7c7222835d7e_targetedsequencing_gdc_realn.bam 6094548138 BAM harmonized CPTAC3 26914441-5bef-4c50-93be-105befa27651 64826df31873d5bbc9cb985c30f596f6 { 'aliquot_tag': 'ALQ_88b2de8a', 'gdc_sample_type': 'Primary Tumor' } @@ -3102,16 +3550,19 @@ C3L-00601.miRNA-Seq.T C3L-00601 UCEC miRNA-Seq tumor CPT0007600006 181113_UNC31- C3L-00601.miRNA-Seq.T.hg38 C3L-00601 UCEC miRNA-Seq tumor CPT0007600006 d80b23ed-a7f0-43d1-8a9e-4de509d98f35_mirnaseq_gdc_realn.bam 213328191 BAM harmonized CPTAC3 e0388603-863a-4448-a1db-be4bdcc2950c 3e538817c7b9dbebf292b12a6b1d1587 { 'aliquot_tag': 'ALQ_e25a276b', 'gdc_sample_type': 'Primary Tumor' } C3L-00601.RNA-Seq.chimeric.A.hg38 C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 063eb81b-ea56-4c6d-b011-a024f971cb1c.rna_seq.chimeric.gdc_realn.bam 138542319 BAM chimeric harmonized CPTAC3 e7ae3bfb-9e89-493e-8ef4-37f9072c584d f415bc5bebd47138dc214b3ded6004e5 { 'aliquot_tag': 'ALQ_6d1ad2cb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00601.RNA-Seq.chimeric.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0007600006 ca9ca606-cb39-4d39-a098-a3f444719200.rna_seq.chimeric.gdc_realn.bam 107771724 BAM chimeric harmonized CPTAC3 ff51f8ff-5e04-4cf2-89aa-674768ba7acf 48ef2f36b2f10af65a6ef2779b8f812b { 'aliquot_tag': 'ALQ_e25a276b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00601.RNA-Seq.genomic.A.hg38 C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 063eb81b-ea56-4c6d-b011-a024f971cb1c.rna_seq.genomic.gdc_realn.bam 8386612191 BAM genomic harmonized CPTAC3 228be8a5-bf9b-4a70-b9a1-b85444c58276 d1c9a3bfd4488cc2e9b20f877b72c105 { 'aliquot_tag': 'ALQ_6d1ad2cb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00601.RNA-Seq.genomic.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0007600006 ca9ca606-cb39-4d39-a098-a3f444719200.rna_seq.genomic.gdc_realn.bam 9429485148 BAM genomic harmonized CPTAC3 5efd4398-3c6d-488c-b413-f8ccde311563 c23021a489b01ecd6f2ce0222d873532 { 'aliquot_tag': 'ALQ_e25a276b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00601.RNA-Seq.R1_L001.T C3L-00601 UCEC RNA-Seq tumor CPT0007600006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 4913164581 FASTQ R1_L001 unaligned CPTAC3 01b9fd20-8317-4067-84cf-e73dd8f92572 450ddc92bde3596b8317a5694b57ca0c { 'aliquot_tag': 'ALQ_e25a276b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00601.RNA-Seq.R1_L002.A C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L002_R1_001.fastq.gz 3897339245 FASTQ R1_L002 unaligned CPTAC3 15a20d32-beec-4388-9408-480db8a1ae5c 198f7d591856745d7a7d9660bb53aa5b { 'aliquot_tag': 'ALQ_6d1ad2cb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00601.RNA-Seq.R1_.T C3L-00601 UCEC RNA-Seq tumor CPT0349750001 20210714_P1_C4_WB7988_plate1_S28_R1_001.fastq.gz 8307203143 FASTQ R1_ unaligned CPTAC3 efdad6a9-6787-4090-9eb6-40245601335e 7409f60a570095ae3578cfdfb440a81d { 'aliquot_tag': 'ALQ_927aa77f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00601.RNA-Seq.R2_L001.T C3L-00601 UCEC RNA-Seq tumor CPT0007600006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 5086037699 FASTQ R2_L001 unaligned CPTAC3 5efbd40c-4225-4a7f-9920-71357ccf41f0 1c90821349388d77a2d021e3d0410ce6 { 'aliquot_tag': 'ALQ_e25a276b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00601.RNA-Seq.R2_L002.A C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L002_R2_001.fastq.gz 4367574210 FASTQ R2_L002 unaligned CPTAC3 0a6f5a3c-53aa-41bc-8c68-7292e1e6b059 93ec51764c583ad7281bc1af97329dcb { 'aliquot_tag': 'ALQ_6d1ad2cb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00601.RNA-Seq.R2_.T C3L-00601 UCEC RNA-Seq tumor CPT0349750001 20210714_P1_C4_WB7988_plate1_S28_R2_001.fastq.gz 8825931211 FASTQ R2_ unaligned CPTAC3 d770eafb-e72c-4d56-8fa6-cc53765fa121 aff055cd0e9b730f9b407d86cb0c1973 { 'aliquot_tag': 'ALQ_927aa77f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00601.RNA-Seq.chimeric.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0349750001 b794f773-0759-4192-a509-2fd9970b3cf1.rna_seq.chimeric.gdc_realn.bam 257658952 BAM chimeric harmonized CPTAC3 e015c3a0-200c-4312-bae8-39088a1993a5 a1e90150a19cc8a4eea7cc8915427f20 { 'aliquot_tag': 'ALQ_927aa77f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00601.RNA-Seq.genomic.A.hg38 C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 063eb81b-ea56-4c6d-b011-a024f971cb1c.rna_seq.genomic.gdc_realn.bam 8386612191 BAM genomic harmonized CPTAC3 5d961309-ae14-4228-a315-0c04b8005a9e d1c9a3bfd4488cc2e9b20f877b72c105 { 'aliquot_tag': 'ALQ_6d1ad2cb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00601.RNA-Seq.genomic.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0007600006 ca9ca606-cb39-4d39-a098-a3f444719200.rna_seq.genomic.gdc_realn.bam 9429485148 BAM genomic harmonized CPTAC3 a22a032f-103c-4026-8393-569d7d56e4ff c23021a489b01ecd6f2ce0222d873532 { 'aliquot_tag': 'ALQ_e25a276b', 'gdc_sample_type': 'Primary Tumor' } +C3L-00601.RNA-Seq.genomic.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0349750001 b794f773-0759-4192-a509-2fd9970b3cf1.rna_seq.genomic.gdc_realn.bam 13435270649 BAM genomic harmonized CPTAC3 ff63675f-842e-4157-bd94-bc780dd55259 af873bd1657c0bc656b5450f4d3ea616 { 'aliquot_tag': 'ALQ_927aa77f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00601.RNA-Seq.R1_L001.T C3L-00601 UCEC RNA-Seq tumor CPT0007600006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 4913164581 FASTQ R1_L001 unaligned CPTAC3 01b9fd20-8317-4067-84cf-e73dd8f92572 450ddc92bde3596b8317a5694b57ca0c { 'aliquot_tag': 'ALQ_e25a276b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00601.RNA-Seq.R1_L002.A C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L002_R1_001.fastq.gz 3897339245 FASTQ R1_L002 unaligned CPTAC3 15a20d32-beec-4388-9408-480db8a1ae5c 198f7d591856745d7a7d9660bb53aa5b { 'aliquot_tag': 'ALQ_6d1ad2cb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-00601.RNA-Seq.R2_L001.T C3L-00601 UCEC RNA-Seq tumor CPT0007600006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 5086037699 FASTQ R2_L001 unaligned CPTAC3 5efbd40c-4225-4a7f-9920-71357ccf41f0 1c90821349388d77a2d021e3d0410ce6 { 'aliquot_tag': 'ALQ_e25a276b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00601.RNA-Seq.R2_L002.A C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L002_R2_001.fastq.gz 4367574210 FASTQ R2_L002 unaligned CPTAC3 0a6f5a3c-53aa-41bc-8c68-7292e1e6b059 93ec51764c583ad7281bc1af97329dcb { 'aliquot_tag': 'ALQ_6d1ad2cb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-00601.RNA-Seq.T C3L-00601 UCEC RNA-Seq tumor CPT0349750001 20210714_P1_C4_WB7988_plate1_S28_R1_001.fastq.gz 8307203143 FASTQ unaligned CPTAC3 efdad6a9-6787-4090-9eb6-40245601335e 7409f60a570095ae3578cfdfb440a81d +C3L-00601.RNA-Seq.T C3L-00601 UCEC RNA-Seq tumor CPT0349750001 20210714_P1_C4_WB7988_plate1_S28_R2_001.fastq.gz 8825931211 FASTQ unaligned CPTAC3 d770eafb-e72c-4d56-8fa6-cc53765fa121 aff055cd0e9b730f9b407d86cb0c1973 C3L-00601.RNA-Seq.transcriptome.A.hg38 C3L-00601 UCEC RNA-Seq tissue_normal CPT0007660006 063eb81b-ea56-4c6d-b011-a024f971cb1c.rna_seq.transcriptome.gdc_realn.bam 9753659626 BAM transcriptome harmonized CPTAC3 90ce20bf-da8b-4842-a2ad-2b4e7da06bc1 1c989897a2107477d2440a38a2d19414 { 'aliquot_tag': 'ALQ_6d1ad2cb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00601.RNA-Seq.transcriptome.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0007600006 ca9ca606-cb39-4d39-a098-a3f444719200.rna_seq.transcriptome.gdc_realn.bam 13528075856 BAM transcriptome harmonized CPTAC3 30b2de31-566e-459f-bdc5-cb078fc15f25 b59592731839207cb58bdc31e514d3c4 { 'aliquot_tag': 'ALQ_e25a276b', 'gdc_sample_type': 'Primary Tumor' } +C3L-00601.RNA-Seq.transcriptome.T.hg38 C3L-00601 UCEC RNA-Seq tumor CPT0349750001 b794f773-0759-4192-a509-2fd9970b3cf1.rna_seq.transcriptome.gdc_realn.bam 8731304008 BAM transcriptome harmonized CPTAC3 55b1b78d-6322-406c-9a97-6b99e0490fde c5237fa65aba83e7c7e036a502f1122b { 'aliquot_tag': 'ALQ_927aa77f', 'gdc_sample_type': 'Primary Tumor' } C3L-00601.WGS.A C3L-00601 UCEC WGS tissue_normal CPT0007660009 CPT0007660009.WholeGenome.RP-1303.bam 65241355364 BAM aligned CPTAC3 92df9e4d-bf90-4d35-ab50-f64891082576 ab0573cde3749647d7d271b4db9f5f4f { 'aliquot_tag': 'ALQ_fda5cf5a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00601.WGS.A.hg38 C3L-00601 UCEC WGS tissue_normal CPT0007660009 babcb183-1b5a-4b68-b09f-636e02e71030_wgs_gdc_realn.bam 94440078384 BAM harmonized CPTAC3 1563405d-7781-4421-a33d-07a7a7b786a5 ed4e49de9d640dacce7a311e9eb11295 { 'aliquot_tag': 'ALQ_fda5cf5a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00601.WGS.N C3L-00601 UCEC WGS blood_normal CPT0002900002 CPT0002900002.WholeGenome.RP-1303.bam 68273223071 BAM aligned CPTAC3 b169fcff-1091-4d23-beac-c0c65f00ca3b a6665cc731f7d5d0bfbba98a7b677ba7 { 'aliquot_tag': 'ALQ_46597e00', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3135,11 +3586,11 @@ C3L-00603.miRNA-Seq.T.hg38 C3L-00603 LSCC miRNA-Seq tumor CPT0064040009 0d922fb6 C3L-00603.RNA-Seq.chimeric.A.hg38 C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 596a9081-dc16-42b6-b58b-d418c3a30d76.rna_seq.chimeric.gdc_realn.bam 41461935 BAM chimeric harmonized CPTAC3 f3c3292b-a903-4ec5-a89f-3847df5e9d26 8905e7cccee9b586576d3b6c2f2cb9ef { 'aliquot_tag': 'ALQ_ecdc751b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00603.RNA-Seq.chimeric.T.hg38 C3L-00603 LSCC RNA-Seq tumor CPT0064040009 ed0bf573-b29d-4cce-b149-d55a51171237.rna_seq.chimeric.gdc_realn.bam 26188212 BAM chimeric harmonized CPTAC3 cf34df7b-6a44-482f-9f78-e529e575608b 6af2f175855a383a4edb285008643d76 { 'aliquot_tag': 'ALQ_a6bb6c3d', 'gdc_sample_type': 'Primary Tumor' } C3L-00603.RNA-Seq.genomic.A.hg38 C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 596a9081-dc16-42b6-b58b-d418c3a30d76.rna_seq.genomic.gdc_realn.bam 8200830182 BAM genomic harmonized CPTAC3 06905783-17eb-4236-9812-4c3fa13ec96a 23e2056ec6cecbc5c48abf5aa5050ba8 { 'aliquot_tag': 'ALQ_ecdc751b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00603.RNA-Seq.genomic.T.hg38 C3L-00603 LSCC RNA-Seq tumor CPT0064040009 ed0bf573-b29d-4cce-b149-d55a51171237.rna_seq.genomic.gdc_realn.bam 7429993065 BAM genomic harmonized CPTAC3 335dce67-aae1-4e68-8f15-39c706386399 98900a19207da2e516453ff207cd01c8 { 'aliquot_tag': 'ALQ_a6bb6c3d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00603.RNA-Seq.R1_L002.A C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 3835017783 FASTQ R1_L002 unaligned CPTAC3 73708fbb-5e14-4ca1-9560-e6e5cb912924 4718e447b824572ea597a3a0de48bcc0 { 'aliquot_tag': 'ALQ_ecdc751b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00603.RNA-Seq.R1_L007.T C3L-00603 LSCC RNA-Seq tumor CPT0064040009 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L007_R1_001.fastq.gz 3679179574 FASTQ R1_L007 unaligned CPTAC3 6da4e491-3134-4e63-bec0-2cf5c58e0e93 85684c46e8a20607be0f235de3fe41f9 { 'aliquot_tag': 'ALQ_a6bb6c3d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00603.RNA-Seq.R2_L002.A C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4240580558 FASTQ R2_L002 unaligned CPTAC3 b44f5c79-6a5d-4639-ba5e-5111379cff8a bb9d7f25a6b78743b57b580adf7b6acd { 'aliquot_tag': 'ALQ_ecdc751b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00603.RNA-Seq.R2_L007.T C3L-00603 LSCC RNA-Seq tumor CPT0064040009 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L007_R2_001.fastq.gz 3790870120 FASTQ R2_L007 unaligned CPTAC3 5481f05c-19c7-4ecc-803b-8e18a2e9aa0e 80abcba7c54824bdbbcd4e199f0cce5c { 'aliquot_tag': 'ALQ_a6bb6c3d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00603.RNA-Seq.genomic.T.hg38 C3L-00603 LSCC RNA-Seq tumor CPT0064040009 ed0bf573-b29d-4cce-b149-d55a51171237.rna_seq.genomic.gdc_realn.bam 7429993065 BAM genomic harmonized CPTAC3 a2235e4f-a3d9-4963-9dff-8950500a01b8 98900a19207da2e516453ff207cd01c8 { 'aliquot_tag': 'ALQ_a6bb6c3d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00603.RNA-Seq.R1_L002.A C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 3835017783 FASTQ R1_L002 unaligned CPTAC3 73708fbb-5e14-4ca1-9560-e6e5cb912924 4718e447b824572ea597a3a0de48bcc0 { 'aliquot_tag': 'ALQ_ecdc751b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-00603.RNA-Seq.R1_L007.T C3L-00603 LSCC RNA-Seq tumor CPT0064040009 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L007_R1_001.fastq.gz 3679179574 FASTQ R1_L007 unaligned CPTAC3 6da4e491-3134-4e63-bec0-2cf5c58e0e93 85684c46e8a20607be0f235de3fe41f9 { 'aliquot_tag': 'ALQ_a6bb6c3d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00603.RNA-Seq.R2_L002.A C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4240580558 FASTQ R2_L002 unaligned CPTAC3 b44f5c79-6a5d-4639-ba5e-5111379cff8a bb9d7f25a6b78743b57b580adf7b6acd { 'aliquot_tag': 'ALQ_ecdc751b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-00603.RNA-Seq.R2_L007.T C3L-00603 LSCC RNA-Seq tumor CPT0064040009 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L007_R2_001.fastq.gz 3790870120 FASTQ R2_L007 unaligned CPTAC3 5481f05c-19c7-4ecc-803b-8e18a2e9aa0e 80abcba7c54824bdbbcd4e199f0cce5c { 'aliquot_tag': 'ALQ_a6bb6c3d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-00603.RNA-Seq.transcriptome.A.hg38 C3L-00603 LSCC RNA-Seq tissue_normal CPT0064050008 596a9081-dc16-42b6-b58b-d418c3a30d76.rna_seq.transcriptome.gdc_realn.bam 9760775911 BAM transcriptome harmonized CPTAC3 58f321bf-4c20-4f71-99e9-b6c59a77c9ab 9d59c6ce72b92190876e4b529a7f0246 { 'aliquot_tag': 'ALQ_ecdc751b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00603.RNA-Seq.transcriptome.T.hg38 C3L-00603 LSCC RNA-Seq tumor CPT0064040009 ed0bf573-b29d-4cce-b149-d55a51171237.rna_seq.transcriptome.gdc_realn.bam 9258228899 BAM transcriptome harmonized CPTAC3 297dad74-85be-497b-881d-44b82d8ec0ed e28e626695c4e2d0271ebb70c0faea8f { 'aliquot_tag': 'ALQ_a6bb6c3d', 'gdc_sample_type': 'Primary Tumor' } C3L-00603.WGS.A C3L-00603 LSCC WGS tissue_normal CPT0064050006 CPT0064050006.WholeGenome.RP-1303.bam 55338774934 BAM aligned CPTAC3 7c330c81-95f4-4935-998d-309923ba5806 9173d9386e60e9d85f622d7e8b92f234 { 'aliquot_tag': 'ALQ_b64581c', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -3164,12 +3615,12 @@ C3L-00604.miRNA-Seq.T C3L-00604 LUAD miRNA-Seq tumor CPT0063810009 180924_UNC31- C3L-00604.miRNA-Seq.T.hg38 C3L-00604 LUAD miRNA-Seq tumor CPT0063810009 b9761e98-e2a9-4256-8820-4d33050d97f9_mirnaseq_gdc_realn.bam 311491986 BAM harmonized CPTAC3 0095f685-ff26-47ee-a0b8-aef15ec4218e a2f6fea4a2627b8562c1e143671c9f2c { 'aliquot_tag': 'ALQ_47af5fae', 'gdc_sample_type': 'Primary Tumor' } C3L-00604.RNA-Seq.chimeric.A.hg38 C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 23335b40-60c0-4971-89eb-e28500534cf4.rna_seq.chimeric.gdc_realn.bam 40562664 BAM chimeric harmonized CPTAC3 2c23a036-def4-4fba-a8ce-d19f0fa32e29 a11687fed784d46c2d611871be555fc4 { 'aliquot_tag': 'ALQ_1ff0cd4f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00604.RNA-Seq.chimeric.T.hg38 C3L-00604 LUAD RNA-Seq tumor CPT0063810009 964bf13e-725c-4d38-9240-ced27b2100d9.rna_seq.chimeric.gdc_realn.bam 23259039 BAM chimeric harmonized CPTAC3 f173ba80-7513-462f-bdf5-f84e7726498a db3583b47e4a412218dc54c7837fdcc2 { 'aliquot_tag': 'ALQ_47af5fae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00604.RNA-Seq.genomic.A.hg38 C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 23335b40-60c0-4971-89eb-e28500534cf4.rna_seq.genomic.gdc_realn.bam 6488680978 BAM genomic harmonized CPTAC3 c5bb28bd-8bdb-4897-a90e-25fb44d4b927 8425f6870000976e09a81f34ceb8bfdb { 'aliquot_tag': 'ALQ_1ff0cd4f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00604.RNA-Seq.genomic.T.hg38 C3L-00604 LUAD RNA-Seq tumor CPT0063810009 964bf13e-725c-4d38-9240-ced27b2100d9.rna_seq.genomic.gdc_realn.bam 7975043210 BAM genomic harmonized CPTAC3 3772036c-c814-4979-9938-4d9a452b1ec7 235de44aefe3e1e3c9de72657550fabc { 'aliquot_tag': 'ALQ_47af5fae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00604.RNA-Seq.R1_L006.A C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 171215_UNC32-K00270_0072_AHN3THBBXX_CTTGTA_S22_L006_R1_001.fastq.gz 3279709309 FASTQ R1_L006 unaligned CPTAC3 a0a9cadd-f144-4e0c-853a-8b0abbc263cb f3356a80ba0af9d3ce20762e9a478390 { 'aliquot_tag': 'ALQ_1ff0cd4f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00604.RNA-Seq.R1_L007.T C3L-00604 LUAD RNA-Seq tumor CPT0063810009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L007_R1_001.fastq.gz 3718960922 FASTQ R1_L007 unaligned CPTAC3 cddf0288-f8e6-4567-861e-c89f00177e9e e1d1369096e133aa3e50999dd099aa7b { 'aliquot_tag': 'ALQ_47af5fae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00604.RNA-Seq.R2_L006.A C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 171215_UNC32-K00270_0072_AHN3THBBXX_CTTGTA_S22_L006_R2_001.fastq.gz 3473897504 FASTQ R2_L006 unaligned CPTAC3 3c2dfe71-2560-439a-b977-5455f44a0947 10aa0489cd2fa537600459d15bf8a7de { 'aliquot_tag': 'ALQ_1ff0cd4f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00604.RNA-Seq.R2_L007.T C3L-00604 LUAD RNA-Seq tumor CPT0063810009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L007_R2_001.fastq.gz 3883610547 FASTQ R2_L007 unaligned CPTAC3 334c4106-ba70-4db1-94eb-4d7138a069bc e74ce0d733148feb4066d680c7ae4f07 { 'aliquot_tag': 'ALQ_47af5fae', 'gdc_sample_type': 'Primary Tumor' } +C3L-00604.RNA-Seq.genomic.A.hg38 C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 23335b40-60c0-4971-89eb-e28500534cf4.rna_seq.genomic.gdc_realn.bam 6488680978 BAM genomic harmonized CPTAC3 5f750b49-c0de-45f4-9665-a3ce85f4bacf 8425f6870000976e09a81f34ceb8bfdb { 'aliquot_tag': 'ALQ_1ff0cd4f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00604.RNA-Seq.genomic.T.hg38 C3L-00604 LUAD RNA-Seq tumor CPT0063810009 964bf13e-725c-4d38-9240-ced27b2100d9.rna_seq.genomic.gdc_realn.bam 7975043210 BAM genomic harmonized CPTAC3 0c2efc1e-e0e4-43b7-b6b5-98137148e2e1 235de44aefe3e1e3c9de72657550fabc { 'aliquot_tag': 'ALQ_47af5fae', 'gdc_sample_type': 'Primary Tumor' } +C3L-00604.RNA-Seq.R1_L006.A C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 171215_UNC32-K00270_0072_AHN3THBBXX_CTTGTA_S22_L006_R1_001.fastq.gz 3279709309 FASTQ R1_L006 unaligned CPTAC3 a0a9cadd-f144-4e0c-853a-8b0abbc263cb f3356a80ba0af9d3ce20762e9a478390 { 'aliquot_tag': 'ALQ_1ff0cd4f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-00604.RNA-Seq.R1_L007.T C3L-00604 LUAD RNA-Seq tumor CPT0063810009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L007_R1_001.fastq.gz 3718960922 FASTQ R1_L007 unaligned CPTAC3 cddf0288-f8e6-4567-861e-c89f00177e9e e1d1369096e133aa3e50999dd099aa7b { 'aliquot_tag': 'ALQ_47af5fae', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00604.RNA-Seq.R2_L006.A C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 171215_UNC32-K00270_0072_AHN3THBBXX_CTTGTA_S22_L006_R2_001.fastq.gz 3473897504 FASTQ R2_L006 unaligned CPTAC3 3c2dfe71-2560-439a-b977-5455f44a0947 10aa0489cd2fa537600459d15bf8a7de { 'aliquot_tag': 'ALQ_1ff0cd4f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-00604.RNA-Seq.R2_L007.T C3L-00604 LUAD RNA-Seq tumor CPT0063810009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L007_R2_001.fastq.gz 3883610547 FASTQ R2_L007 unaligned CPTAC3 334c4106-ba70-4db1-94eb-4d7138a069bc e74ce0d733148feb4066d680c7ae4f07 { 'aliquot_tag': 'ALQ_47af5fae', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-00604.RNA-Seq.transcriptome.A.hg38 C3L-00604 LUAD RNA-Seq tissue_normal CPT0063840006 23335b40-60c0-4971-89eb-e28500534cf4.rna_seq.transcriptome.gdc_realn.bam 7630674522 BAM transcriptome harmonized CPTAC3 76ef5b1f-33d3-4e68-8e96-635d51ea9c7e e24b0595fc85a8f970f78e48b2ac86ec { 'aliquot_tag': 'ALQ_1ff0cd4f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00604.RNA-Seq.transcriptome.T.hg38 C3L-00604 LUAD RNA-Seq tumor CPT0063810009 964bf13e-725c-4d38-9240-ced27b2100d9.rna_seq.transcriptome.gdc_realn.bam 10748389675 BAM transcriptome harmonized CPTAC3 f7ab1789-3212-4abd-9c34-02288b31cc4c fb7b52aef9fdfabd9e283d8ee05d22ed { 'aliquot_tag': 'ALQ_47af5fae', 'gdc_sample_type': 'Primary Tumor' } C3L-00604.WGS.A C3L-00604 LUAD WGS tissue_normal CPT0063840009 CPT0063840009.WholeGenome.RP-1303.bam 57695442688 BAM aligned CPTAC3 b54c2d6c-cdbe-44d8-a1b2-0b22ba5a20fa 09a03d8410301c6cb7fe9b3220102a73 { 'aliquot_tag': 'ALQ_8f4fd0de', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -3189,12 +3640,15 @@ C3L-00605.MethArray.Red.T C3L-00605 UCEC Methylation Array tumor CPT0063890006 2 C3L-00605.miRNA-Seq.T C3L-00605 UCEC miRNA-Seq tumor CPT0063890009 180924_UNC31-K00269_0154_AHWTMLBBXX_GGTAGC_S7_L003_R1_001.unaln.bam 193487607 BAM unaligned CPTAC3 323821c6-8c52-4939-ab11-0157414cfcb4 581d81dae32c46c8ab2d32ba438d2b83 { 'aliquot_tag': 'ALQ_77df146f', 'gdc_sample_type': 'Primary Tumor' } C3L-00605.miRNA-Seq.T.hg38 C3L-00605 UCEC miRNA-Seq tumor CPT0063890009 e9da758a-8f43-411d-8d6d-b0b58207f539_mirnaseq_gdc_realn.bam 214888088 BAM harmonized CPTAC3 6d273d51-1d22-4f71-8a64-39b1b6c4fd57 cd62d794fdd04f9dd79205b51468dbac { 'aliquot_tag': 'ALQ_77df146f', 'gdc_sample_type': 'Primary Tumor' } C3L-00605.RNA-Seq.chimeric.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0063890009 dc644a23-b141-42bc-b380-0b99ff5b3e14.rna_seq.chimeric.gdc_realn.bam 28767632 BAM chimeric harmonized CPTAC3 552566d9-44ec-4bcb-98f6-b8a6a1da22fd 25b9fdb5c3bc5fe53fe682dc264cb463 { 'aliquot_tag': 'ALQ_77df146f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00605.RNA-Seq.chimeric.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0349770001 e06d03bf-f690-495f-b131-57ae563af95e.rna_seq.chimeric.gdc_realn.bam 139549793 BAM chimeric harmonized CPTAC3 707108e4-5f9a-456d-b3db-df64e863c6c4 466320a184cb0a4bbfe8e8952cde8f1f { 'aliquot_tag': 'ALQ_e8baf41f', 'gdc_sample_type': 'Primary Tumor' } C3L-00605.RNA-Seq.genomic.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0063890009 dc644a23-b141-42bc-b380-0b99ff5b3e14.rna_seq.genomic.gdc_realn.bam 8893378244 BAM genomic harmonized CPTAC3 43bda321-b87d-4c61-8410-16f3632842c4 f381bdca52c057377fd34794f0771500 { 'aliquot_tag': 'ALQ_77df146f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00605.RNA-Seq.R1_L006.T C3L-00605 UCEC RNA-Seq tumor CPT0063890009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 4308786861 FASTQ R1_L006 unaligned CPTAC3 2ef7f6a7-6298-4cd2-a38b-9b810905ab57 5179bb1dd99d937435b46a2854c0b82a { 'aliquot_tag': 'ALQ_77df146f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00605.RNA-Seq.R1_.T C3L-00605 UCEC RNA-Seq tumor CPT0349770001 20210723_P2_G11_WB7988-plate2_S83_R1_001.fastq.gz 3385320872 FASTQ R1_ unaligned CPTAC3 f1ae59e2-f920-46aa-a78a-c3a726995937 6d9e3c24dec1128565def27208f53802 { 'aliquot_tag': 'ALQ_e8baf41f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00605.RNA-Seq.R2_L006.T C3L-00605 UCEC RNA-Seq tumor CPT0063890009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 4625219569 FASTQ R2_L006 unaligned CPTAC3 7056adfe-ff91-4228-91b4-9954ba0148dd 09e4b09c6e0a73586b432bde5addca07 { 'aliquot_tag': 'ALQ_77df146f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00605.RNA-Seq.R2_.T C3L-00605 UCEC RNA-Seq tumor CPT0349770001 20210723_P2_G11_WB7988-plate2_S83_R2_001.fastq.gz 3495649700 FASTQ R2_ unaligned CPTAC3 de78178b-7053-420d-a2a5-b20065363be4 4e7ef53f82d27b4f474dce5143bd7c67 { 'aliquot_tag': 'ALQ_e8baf41f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00605.RNA-Seq.genomic.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0349770001 e06d03bf-f690-495f-b131-57ae563af95e.rna_seq.genomic.gdc_realn.bam 6495962704 BAM genomic harmonized CPTAC3 465589e6-4bbe-40fe-ba94-7a04d63354e3 bc2a0a6d5d4b0b0d64d8d31b86e67d69 { 'aliquot_tag': 'ALQ_e8baf41f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00605.RNA-Seq.R1_L006.T C3L-00605 UCEC RNA-Seq tumor CPT0063890009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 4308786861 FASTQ R1_L006 unaligned CPTAC3 2ef7f6a7-6298-4cd2-a38b-9b810905ab57 5179bb1dd99d937435b46a2854c0b82a { 'aliquot_tag': 'ALQ_77df146f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00605.RNA-Seq.R2_L006.T C3L-00605 UCEC RNA-Seq tumor CPT0063890009 170828_UNC31-K00269_0077_AHLF33BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 4625219569 FASTQ R2_L006 unaligned CPTAC3 7056adfe-ff91-4228-91b4-9954ba0148dd 09e4b09c6e0a73586b432bde5addca07 { 'aliquot_tag': 'ALQ_77df146f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-00605.RNA-Seq.T C3L-00605 UCEC RNA-Seq tumor CPT0349770001 20210723_P2_G11_WB7988-plate2_S83_R1_001.fastq.gz 3385320872 FASTQ unaligned CPTAC3 f1ae59e2-f920-46aa-a78a-c3a726995937 6d9e3c24dec1128565def27208f53802 +C3L-00605.RNA-Seq.T C3L-00605 UCEC RNA-Seq tumor CPT0349770001 20210723_P2_G11_WB7988-plate2_S83_R2_001.fastq.gz 3495649700 FASTQ unaligned CPTAC3 de78178b-7053-420d-a2a5-b20065363be4 4e7ef53f82d27b4f474dce5143bd7c67 C3L-00605.RNA-Seq.transcriptome.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0063890009 dc644a23-b141-42bc-b380-0b99ff5b3e14.rna_seq.transcriptome.gdc_realn.bam 11369339348 BAM transcriptome harmonized CPTAC3 fff6a6ec-a254-4703-8405-49b725b4cd9f b060095e9a102e14bcee582002df0bfc { 'aliquot_tag': 'ALQ_77df146f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00605.RNA-Seq.transcriptome.T.hg38 C3L-00605 UCEC RNA-Seq tumor CPT0349770001 e06d03bf-f690-495f-b131-57ae563af95e.rna_seq.transcriptome.gdc_realn.bam 2820957856 BAM transcriptome harmonized CPTAC3 5362883c-7255-4f85-8a87-e98071ee09c8 e1b8a3a4055b4946184d75007d9d2a97 { 'aliquot_tag': 'ALQ_e8baf41f', 'gdc_sample_type': 'Primary Tumor' } C3L-00605.WGS.N C3L-00605 UCEC WGS blood_normal CPT0065340002 CPT0065340002.WholeGenome.RP-1303.bam 103126627116 BAM aligned CPTAC3 e60ba070-a4f5-4479-9eda-e259a62aa017 020fa3852fa060d397eaa67d1713c6ed { 'aliquot_tag': 'ALQ_118accaf', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00605.WGS.N.hg38 C3L-00605 UCEC WGS blood_normal CPT0065340002 9c7363c2-750a-408e-aa11-1bfaae41e7d0_gdc_realn.bam 160012713673 BAM harmonized CPTAC3 8f0c137b-dc5d-43c6-81e8-d728d8a1c5a8 a81cf67291109449a59197c14f7c79e0 { 'aliquot_tag': 'ALQ_118accaf', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00605.WGS.T C3L-00605 UCEC WGS tumor CPT0063890006 CPT0063890006.WholeGenome.RP-1303.bam 98055462108 BAM aligned CPTAC3 9c1798df-913b-40e8-aebd-f7864f01e283 4e75d2eefc503aa204a9f56682c1629e { 'aliquot_tag': 'ALQ_e76009fe', 'gdc_sample_type': 'Primary Tumor' } @@ -3206,16 +3660,16 @@ C3L-00605.WXS.T.hg38 C3L-00605 UCEC WXS tumor CPT0063890006 d9a888d9-211a-4a13-b C3L-00606.DUP_13415cf8.miRNA-Seq.T C3L-00606 CCRCC miRNA-Seq tumor CPT0079280006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACAGTG_S35_L003_R1_001.unaln.bam 244651016 BAM unaligned CPTAC3 ed840d13-64bd-4ed5-8416-ec7c2579bbc5 641987ac305b47bc20d878b067392faf { 'aliquot_tag': 'DUP_13415cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00606.DUP_13415cf8.miRNA-Seq.T.hg38 C3L-00606 CCRCC miRNA-Seq tumor CPT0079280006 a770c4ec-a4fe-4278-9784-c9269ddab9b7_mirnaseq_gdc_realn.bam 272216507 BAM harmonized CPTAC3 3c8bb34a-9486-4808-a4e0-75193ace261c 283841a6092b5624a4b3baff76578469 { 'aliquot_tag': 'DUP_13415cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00606.DUP_13415cf8.RNA-Seq.chimeric.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 92f61f67-a832-4070-881f-bad59c711b34.rna_seq.chimeric.gdc_realn.bam 137124607 BAM chimeric harmonized CPTAC3 9a8ce6f4-87ff-4803-a1f1-ae454e88c79b 8ab6e16439111d3c888b27192795ef83 { 'aliquot_tag': 'DUP_13415cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00606.DUP_13415cf8.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 92f61f67-a832-4070-881f-bad59c711b34.rna_seq.genomic.gdc_realn.bam 7649688030 BAM genomic harmonized CPTAC3 fdef575b-2582-444e-bda7-eda4a6fcdb40 8d343860277c085d363c0935d1347a65 { 'aliquot_tag': 'DUP_13415cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00606.DUP_13415cf8.RNA-Seq.R1_L001.T C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 200519_UNC31-K00269_0280_BHHKGNBBXY_CAACAATG-CTTCACGG_S2_L001_R1_001.fastq.gz 3161018660 FASTQ R1_L001 unaligned CPTAC3 09b97952-9927-4705-95f5-70dfc575427e b6756fa2265714870d117101977cc225 { 'aliquot_tag': 'DUP_13415cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00606.DUP_13415cf8.RNA-Seq.R2_L001.T C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 200519_UNC31-K00269_0280_BHHKGNBBXY_CAACAATG-CTTCACGG_S2_L001_R2_001.fastq.gz 3815255893 FASTQ R2_L001 unaligned CPTAC3 a024c126-7dca-4417-9a95-60649b9384b2 8eae2d6d3447fe57d3ff36b990cde612 { 'aliquot_tag': 'DUP_13415cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00606.DUP_13415cf8.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 92f61f67-a832-4070-881f-bad59c711b34.rna_seq.genomic.gdc_realn.bam 7649688030 BAM genomic harmonized CPTAC3 01c7609e-633d-4571-aa01-b42a00d0a353 8d343860277c085d363c0935d1347a65 { 'aliquot_tag': 'DUP_13415cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00606.DUP_13415cf8.RNA-Seq.R1_L001.T C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 200519_UNC31-K00269_0280_BHHKGNBBXY_CAACAATG-CTTCACGG_S2_L001_R1_001.fastq.gz 3161018660 FASTQ R1_L001 unaligned CPTAC3 09b97952-9927-4705-95f5-70dfc575427e b6756fa2265714870d117101977cc225 { 'aliquot_tag': 'DUP_13415cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3L-00606.DUP_13415cf8.RNA-Seq.R2_L001.T C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 200519_UNC31-K00269_0280_BHHKGNBBXY_CAACAATG-CTTCACGG_S2_L001_R2_001.fastq.gz 3815255893 FASTQ R2_L001 unaligned CPTAC3 a024c126-7dca-4417-9a95-60649b9384b2 8eae2d6d3447fe57d3ff36b990cde612 { 'aliquot_tag': 'DUP_13415cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3L-00606.DUP_13415cf8.RNA-Seq.transcriptome.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079280006 92f61f67-a832-4070-881f-bad59c711b34.rna_seq.transcriptome.gdc_realn.bam 9545346936 BAM transcriptome harmonized CPTAC3 66d7a9f5-3565-4f42-aa56-66a6336b6707 31356088d6af74a92e190b49193bd340 { 'aliquot_tag': 'DUP_13415cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00606.DUP_2e217548.miRNA-Seq.T C3L-00606 CCRCC miRNA-Seq tumor CPT0079290006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTTGA_S36_L003_R1_001.unaln.bam 258462014 BAM unaligned CPTAC3 14369cde-31ea-471c-b2cf-cac30a449f59 2b209e704d465ba453fe54a51123ae3f { 'aliquot_tag': 'DUP_2e217548', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00606.DUP_2e217548.miRNA-Seq.T.hg38 C3L-00606 CCRCC miRNA-Seq tumor CPT0079290006 e373db0f-f8a1-47a2-8a0e-ad812fac0621_mirnaseq_gdc_realn.bam 288617248 BAM harmonized CPTAC3 f7affb97-b962-4a5b-9617-200af34c07ff 33ae974b4288627d74db3d006e938a6e { 'aliquot_tag': 'DUP_2e217548', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00606.DUP_2e217548.RNA-Seq.chimeric.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 de74f389-cdce-49c2-904f-63736c13dc2d.rna_seq.chimeric.gdc_realn.bam 93673355 BAM chimeric harmonized CPTAC3 c2770117-e211-4f05-8b38-5e6a796ce1f0 694aee2e5f5ce62a9da10424f9468bd4 { 'aliquot_tag': 'DUP_2e217548', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00606.DUP_2e217548.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 de74f389-cdce-49c2-904f-63736c13dc2d.rna_seq.genomic.gdc_realn.bam 10760326638 BAM genomic harmonized CPTAC3 d501a752-470f-40ea-8063-97846aa49f14 03be0fc0115670d09f472d2ae62d4f29 { 'aliquot_tag': 'DUP_2e217548', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00606.DUP_2e217548.RNA-Seq.R1_L001.T C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAATGAGA-GAGGCATT_S3_L001_R1_001.fastq.gz 4766794011 FASTQ R1_L001 unaligned CPTAC3 35a41cff-30e6-444b-8e79-5ed6bcd0c649 713a5e045db17aff3327a2380796e673 { 'aliquot_tag': 'DUP_2e217548', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00606.DUP_2e217548.RNA-Seq.R2_L001.T C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAATGAGA-GAGGCATT_S3_L001_R2_001.fastq.gz 5664402490 FASTQ R2_L001 unaligned CPTAC3 5f052edd-5f06-49f4-b792-f02153f1f13a 429523355c4f63e0f856bac11b41ad7e { 'aliquot_tag': 'DUP_2e217548', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00606.DUP_2e217548.RNA-Seq.R1_L001.T C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAATGAGA-GAGGCATT_S3_L001_R1_001.fastq.gz 4766794011 FASTQ R1_L001 unaligned CPTAC3 35a41cff-30e6-444b-8e79-5ed6bcd0c649 713a5e045db17aff3327a2380796e673 { 'aliquot_tag': 'DUP_2e217548', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3L-00606.DUP_2e217548.RNA-Seq.R2_L001.T C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAATGAGA-GAGGCATT_S3_L001_R2_001.fastq.gz 5664402490 FASTQ R2_L001 unaligned CPTAC3 5f052edd-5f06-49f4-b792-f02153f1f13a 429523355c4f63e0f856bac11b41ad7e { 'aliquot_tag': 'DUP_2e217548', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3L-00606.DUP_2e217548.RNA-Seq.transcriptome.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079290006 de74f389-cdce-49c2-904f-63736c13dc2d.rna_seq.transcriptome.gdc_realn.bam 13976095062 BAM transcriptome harmonized CPTAC3 ab37dafb-9237-4130-b7a9-2a39a57f9ed1 1d360e4b4505e3a67b20a1b4606106c2 { 'aliquot_tag': 'DUP_2e217548', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00606.DUP_83fe4169.MethArray.Green.T C3L-00606 CCRCC Methylation Array tumor CPT0079280009 204372030161_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 55abf0fc-a0a8-421e-b091-7547b1e9148e 034f38e559527475976685a2fef4ecf0 { 'aliquot_tag': 'DUP_83fe4169', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00606.DUP_83fe4169.MethArray.Red.T C3L-00606 CCRCC Methylation Array tumor CPT0079280009 204372030161_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 d13a71a2-7aab-4182-9325-209cc33aea89 e519daa975a4ca095480e04b229d46df { 'aliquot_tag': 'DUP_83fe4169', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -3240,19 +3694,19 @@ C3L-00606.miRNA-Seq.T.hg38 C3L-00606 CCRCC miRNA-Seq tumor CPT0079270006 d98c99f C3L-00606.RNA-Seq.chimeric.A.hg38 C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 55731cdc-3348-4cfd-8bf1-d5a296057110.rna_seq.chimeric.gdc_realn.bam 80680422 BAM chimeric harmonized CPTAC3 616007a7-db93-4b39-90db-2ca841917eac 7d67b3739a1d5a0f056f566b4571b85e { 'aliquot_tag': 'ALQ_e86dc49c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00606.RNA-Seq.chimeric.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 172b0694-5c6a-4e37-ac2b-5e6600bb16a0.rna_seq.chimeric.gdc_realn.bam 213153686 BAM chimeric harmonized CPTAC3 ac33693a-b0cb-443e-a715-dea9cba11e5b 99535a43b88750c8be149d975d931ec6 { 'aliquot_tag': 'ALQ_9111cb29', 'gdc_sample_type': 'Primary Tumor' } C3L-00606.RNA-Seq.genomic.A.hg38 C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 55731cdc-3348-4cfd-8bf1-d5a296057110.rna_seq.genomic.gdc_realn.bam 8732457205 BAM genomic harmonized CPTAC3 c3d45eb9-892d-43b7-8c30-180c79c76d84 b5203beb962c504a4d72cd9a7fd07504 { 'aliquot_tag': 'ALQ_e86dc49c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00606.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 172b0694-5c6a-4e37-ac2b-5e6600bb16a0.rna_seq.genomic.gdc_realn.bam 8206599368 BAM genomic harmonized CPTAC3 2fb6c69a-4a2f-4e03-b95f-9d052089c973 51952f991dc1e6297b51e2abb14f1d62 { 'aliquot_tag': 'ALQ_9111cb29', 'gdc_sample_type': 'Primary Tumor' } -C3L-00606.RNA-Seq.R1_L004.T C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGATGT_S14_L004_R1_001.fastq.gz 4073068847 FASTQ R1_L004 unaligned CPTAC3 c609497c-f015-409f-9cf7-3b466a1dd9e4 eddc2c5c057c54b5b21cc51105b88b7c { 'aliquot_tag': 'ALQ_9111cb29', 'gdc_sample_type': 'Primary Tumor' } -C3L-00606.RNA-Seq.R1_L008.A C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L008_R1_001.fastq.gz 4236947704 FASTQ R1_L008 unaligned CPTAC3 17763b60-3901-4f7f-8074-d075ec244076 702ea37e9267d8eb6e1ff246694978f8 { 'aliquot_tag': 'ALQ_e86dc49c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00606.RNA-Seq.R2_L004.T C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGATGT_S14_L004_R2_001.fastq.gz 4450605623 FASTQ R2_L004 unaligned CPTAC3 0f88b422-2196-4cc5-a77b-f48806ec407f 1923295b2cc2351e568326d497406712 { 'aliquot_tag': 'ALQ_9111cb29', 'gdc_sample_type': 'Primary Tumor' } -C3L-00606.RNA-Seq.R2_L008.A C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L008_R2_001.fastq.gz 4683728721 FASTQ R2_L008 unaligned CPTAC3 e298efe4-16f4-46ec-af52-d098a306ee1d 45dff2f22f0c58a6acd3c30d959b4ba9 { 'aliquot_tag': 'ALQ_e86dc49c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00606.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 172b0694-5c6a-4e37-ac2b-5e6600bb16a0.rna_seq.genomic.gdc_realn.bam 8206599368 BAM genomic harmonized CPTAC3 58a55672-a230-4a86-a79f-f990131d3457 51952f991dc1e6297b51e2abb14f1d62 { 'aliquot_tag': 'ALQ_9111cb29', 'gdc_sample_type': 'Primary Tumor' } +C3L-00606.RNA-Seq.R1_L004.T C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGATGT_S14_L004_R1_001.fastq.gz 4073068847 FASTQ R1_L004 unaligned CPTAC3 c609497c-f015-409f-9cf7-3b466a1dd9e4 eddc2c5c057c54b5b21cc51105b88b7c { 'aliquot_tag': 'ALQ_9111cb29', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00606.RNA-Seq.R1_L008.A C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L008_R1_001.fastq.gz 4236947704 FASTQ R1_L008 unaligned CPTAC3 17763b60-3901-4f7f-8074-d075ec244076 702ea37e9267d8eb6e1ff246694978f8 { 'aliquot_tag': 'ALQ_e86dc49c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00606.RNA-Seq.R2_L004.T C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGATGT_S14_L004_R2_001.fastq.gz 4450605623 FASTQ R2_L004 unaligned CPTAC3 0f88b422-2196-4cc5-a77b-f48806ec407f 1923295b2cc2351e568326d497406712 { 'aliquot_tag': 'ALQ_9111cb29', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00606.RNA-Seq.R2_L008.A C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L008_R2_001.fastq.gz 4683728721 FASTQ R2_L008 unaligned CPTAC3 e298efe4-16f4-46ec-af52-d098a306ee1d 45dff2f22f0c58a6acd3c30d959b4ba9 { 'aliquot_tag': 'ALQ_e86dc49c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00606.RNA-Seq.transcriptome.A.hg38 C3L-00606 CCRCC RNA-Seq tissue_normal CPT0079300006 55731cdc-3348-4cfd-8bf1-d5a296057110.rna_seq.transcriptome.gdc_realn.bam 10708518017 BAM transcriptome harmonized CPTAC3 e20fe32a-3eba-41cd-a315-6f970d4347e2 19e4a435291acc76b03aeb7954dc7441 { 'aliquot_tag': 'ALQ_e86dc49c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00606.RNA-Seq.transcriptome.T.hg38 C3L-00606 CCRCC RNA-Seq tumor CPT0079270006 172b0694-5c6a-4e37-ac2b-5e6600bb16a0.rna_seq.transcriptome.gdc_realn.bam 12563184875 BAM transcriptome harmonized CPTAC3 ef24f8c1-661a-4dee-af08-b8eeb4f41fd2 1d6fb2a726b17a5f6678b4b360e446a7 { 'aliquot_tag': 'ALQ_9111cb29', 'gdc_sample_type': 'Primary Tumor' } -C3L-00606.scRNA-Seq.R1_L001.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 20210514_WUSTL_TWGD-CPT0079270013-XBn1_1_ACTTTACGTG+TGAACGCCCT_S1_L001_R1_001.fastq.gz 5909535316 FASTQ R1_L001 unaligned CPTAC3 35f5df89-97ce-42bb-b877-b5895897264c e0e04b5a75fa7ac55f4cbe5958707e76 { 'aliquot_tag': 'ALQ_f8600ee7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00606.scRNA-Seq.R1_L003.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 20210515_WUSTL_TWFU-CPT0079290013-Y1N1Z1_1Bn1_1_CGAAGTATAC+GAACTTGGAG_S1_L003_R1_001.fastq.gz 7006974487 FASTQ R1_L003 unaligned CPTAC3 8e887aa1-f154-4df2-857c-3bdca0b7c9c6 6570d8dc19731d2c838493b57941e119 { 'aliquot_tag': 'ALQ_4750b086', 'gdc_sample_type': 'Primary Tumor' } -C3L-00606.scRNA-Seq.R1_L004.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 20210520_WUSTL_TWCE-CPT0079280013-Y1N1Z1_1Bn1_1_TCCCAAGGGT+AAAGGTAGTA_S1_L004_R1_001.fastq.gz 9757383027 FASTQ R1_L004 unaligned CPTAC3 28c6d96c-f9f7-4ceb-939d-fcd71cb40b97 994d4fef04770427c28ee90c5bd09903 { 'aliquot_tag': 'ALQ_7a309936', 'gdc_sample_type': 'Primary Tumor' } -C3L-00606.scRNA-Seq.R2_L001.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 20210514_WUSTL_TWGD-CPT0079270013-XBn1_1_ACTTTACGTG+TGAACGCCCT_S1_L001_R2_001.fastq.gz 20536180766 FASTQ R2_L001 unaligned CPTAC3 de34e27a-d64a-41a1-a883-d9ef33055b9f e668e6fa36aa61fd8dc615a657a642d0 { 'aliquot_tag': 'ALQ_f8600ee7', 'gdc_sample_type': 'Primary Tumor' } -C3L-00606.scRNA-Seq.R2_L003.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 20210515_WUSTL_TWFU-CPT0079290013-Y1N1Z1_1Bn1_1_CGAAGTATAC+GAACTTGGAG_S1_L003_R2_001.fastq.gz 25485703292 FASTQ R2_L003 unaligned CPTAC3 423b2131-85be-4a3e-a8e3-7fd0a153c2db 9cc7e14fd80755b6c860e0e831b0a64f { 'aliquot_tag': 'ALQ_4750b086', 'gdc_sample_type': 'Primary Tumor' } -C3L-00606.scRNA-Seq.R2_L004.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 20210520_WUSTL_TWCE-CPT0079280013-Y1N1Z1_1Bn1_1_TCCCAAGGGT+AAAGGTAGTA_S1_L004_R2_001.fastq.gz 21071134741 FASTQ R2_L004 unaligned CPTAC3 0601ec15-081d-418f-a6dd-510ed23c5337 0abc388faaf4746c1f3f363bf2a6cf67 { 'aliquot_tag': 'ALQ_7a309936', 'gdc_sample_type': 'Primary Tumor' } +C3L-00606.scRNA-Seq.R1_L001.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 20210514_WUSTL_TWGD-CPT0079270013-XBn1_1_ACTTTACGTG+TGAACGCCCT_S1_L001_R1_001.fastq.gz 5909535316 FASTQ R1_L001 unaligned CPTAC3 35f5df89-97ce-42bb-b877-b5895897264c e0e04b5a75fa7ac55f4cbe5958707e76 { 'aliquot_tag': 'ALQ_f8600ee7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00606.scRNA-Seq.R1_L003.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 20210515_WUSTL_TWFU-CPT0079290013-Y1N1Z1_1Bn1_1_CGAAGTATAC+GAACTTGGAG_S1_L003_R1_001.fastq.gz 7006974487 FASTQ R1_L003 unaligned CPTAC3 8e887aa1-f154-4df2-857c-3bdca0b7c9c6 6570d8dc19731d2c838493b57941e119 { 'aliquot_tag': 'ALQ_4750b086', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00606.scRNA-Seq.R1_L004.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 20210520_WUSTL_TWCE-CPT0079280013-Y1N1Z1_1Bn1_1_TCCCAAGGGT+AAAGGTAGTA_S1_L004_R1_001.fastq.gz 9757383027 FASTQ R1_L004 unaligned CPTAC3 28c6d96c-f9f7-4ceb-939d-fcd71cb40b97 994d4fef04770427c28ee90c5bd09903 { 'aliquot_tag': 'ALQ_7a309936', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00606.scRNA-Seq.R2_L001.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079270013 20210514_WUSTL_TWGD-CPT0079270013-XBn1_1_ACTTTACGTG+TGAACGCCCT_S1_L001_R2_001.fastq.gz 20536180766 FASTQ R2_L001 unaligned CPTAC3 de34e27a-d64a-41a1-a883-d9ef33055b9f e668e6fa36aa61fd8dc615a657a642d0 { 'aliquot_tag': 'ALQ_f8600ee7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00606.scRNA-Seq.R2_L003.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079290013 20210515_WUSTL_TWFU-CPT0079290013-Y1N1Z1_1Bn1_1_CGAAGTATAC+GAACTTGGAG_S1_L003_R2_001.fastq.gz 25485703292 FASTQ R2_L003 unaligned CPTAC3 423b2131-85be-4a3e-a8e3-7fd0a153c2db 9cc7e14fd80755b6c860e0e831b0a64f { 'aliquot_tag': 'ALQ_4750b086', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00606.scRNA-Seq.R2_L004.T C3L-00606 CCRCC scRNA-Seq tumor CPT0079280013 20210520_WUSTL_TWCE-CPT0079280013-Y1N1Z1_1Bn1_1_TCCCAAGGGT+AAAGGTAGTA_S1_L004_R2_001.fastq.gz 21071134741 FASTQ R2_L004 unaligned CPTAC3 0601ec15-081d-418f-a6dd-510ed23c5337 0abc388faaf4746c1f3f363bf2a6cf67 { 'aliquot_tag': 'ALQ_7a309936', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-00606.WGS.A C3L-00606 CCRCC WGS tissue_normal CPT0079300009 CPT0079300009.WholeGenome.RP-1303.bam 64686378157 BAM aligned CPTAC3 33590b57-3b79-4b8c-8774-5d2b1f0f0aec 7e7ced207601d653d781a16875370022 { 'aliquot_tag': 'ALQ_78d2d90d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00606.WGS.A.hg38 C3L-00606 CCRCC WGS tissue_normal CPT0079300009 e037f72e-e7a4-424c-b007-234c10e41d24_wgs_gdc_realn.bam 95254866972 BAM harmonized CPTAC3 352f0caa-a6cf-49be-8476-de93adaa9b94 5a864ef7d922fdfceff3da1f1d776d52 { 'aliquot_tag': 'ALQ_78d2d90d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00606.WGS.N C3L-00606 CCRCC WGS blood_normal CPT0080110002 CPT0080110002.WholeGenome.RP-1303.bam 62412835946 BAM aligned CPTAC3 66aa336c-f58c-4f03-a35f-93ade7810bda 820acfa47dc66cba54ea9db6a2fbc832 { 'aliquot_tag': 'ALQ_d310df41', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3275,12 +3729,12 @@ C3L-00607.miRNA-Seq.T C3L-00607 CCRCC miRNA-Seq tumor CPT0025050006 180924_UNC31 C3L-00607.miRNA-Seq.T.hg38 C3L-00607 CCRCC miRNA-Seq tumor CPT0025050006 a00a647a-d53e-463a-8ea2-a2e2bb529866_mirnaseq_gdc_realn.bam 173595676 BAM harmonized CPTAC3 757ebf79-90fe-412c-8400-d0a00eb953e4 ff3c945a07a3e333de339bcfb0282d0e { 'aliquot_tag': 'ALQ_29595d52', 'gdc_sample_type': 'Primary Tumor' } C3L-00607.RNA-Seq.chimeric.A.hg38 C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 ddc9f20d-bc4a-4584-bb50-542bb6cead38.rna_seq.chimeric.gdc_realn.bam 32728424 BAM chimeric harmonized CPTAC3 d2541e8d-73c0-4f1b-b1ee-ba3ce58a6ca7 62a54aa9655bbd6013f153b1725d597b { 'aliquot_tag': 'ALQ_6ef92782', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00607.RNA-Seq.chimeric.T.hg38 C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 bd6d2009-8b51-420d-9976-09d60de5d01e.rna_seq.chimeric.gdc_realn.bam 64712169 BAM chimeric harmonized CPTAC3 b6043c1c-01ec-49e0-9ff5-efabd488dc39 c7eb6d34cca227f0ecc9be1fa362222e { 'aliquot_tag': 'ALQ_29595d52', 'gdc_sample_type': 'Primary Tumor' } -C3L-00607.RNA-Seq.genomic.A.hg38 C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 ddc9f20d-bc4a-4584-bb50-542bb6cead38.rna_seq.genomic.gdc_realn.bam 7429344445 BAM genomic harmonized CPTAC3 c9bda9ff-5151-42a5-996b-a5a0c5a87046 009acd5ca8bca2844aa7c1cc22c47522 { 'aliquot_tag': 'ALQ_6ef92782', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00607.RNA-Seq.genomic.T.hg38 C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 bd6d2009-8b51-420d-9976-09d60de5d01e.rna_seq.genomic.gdc_realn.bam 7228486066 BAM genomic harmonized CPTAC3 ea33a66d-9f0b-4310-aad1-7a54fdd1f92f a4fbd701bc51fe1f565e2a0cd8a8d925 { 'aliquot_tag': 'ALQ_29595d52', 'gdc_sample_type': 'Primary Tumor' } -C3L-00607.RNA-Seq.R1_L001.T C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L001_R1_001.fastq.gz 3565751071 FASTQ R1_L001 unaligned CPTAC3 1029d950-d46f-4ee3-adc7-fcedfaaa9934 5e87225e4eed403e981a7353bb7817d2 { 'aliquot_tag': 'ALQ_29595d52', 'gdc_sample_type': 'Primary Tumor' } -C3L-00607.RNA-Seq.R1_L005.A C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTTGA_S18_L005_R1_001.fastq.gz 3654075527 FASTQ R1_L005 unaligned CPTAC3 9d6e4b39-0d25-48da-bffe-f3df9ba5c2ee 8c620947f2147e50cd4eca7a44fe294e { 'aliquot_tag': 'ALQ_6ef92782', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00607.RNA-Seq.R2_L001.T C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L001_R2_001.fastq.gz 3902396964 FASTQ R2_L001 unaligned CPTAC3 971e3386-6c90-4819-9eda-78abf0bd8792 678d02298f5419eabdef034520a146f4 { 'aliquot_tag': 'ALQ_29595d52', 'gdc_sample_type': 'Primary Tumor' } -C3L-00607.RNA-Seq.R2_L005.A C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTTGA_S18_L005_R2_001.fastq.gz 4031773432 FASTQ R2_L005 unaligned CPTAC3 4779af1c-584c-481b-90a0-b28c94879c8d 43cb877296159079221dec6d1917dca2 { 'aliquot_tag': 'ALQ_6ef92782', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00607.RNA-Seq.genomic.A.hg38 C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 ddc9f20d-bc4a-4584-bb50-542bb6cead38.rna_seq.genomic.gdc_realn.bam 7429344445 BAM genomic harmonized CPTAC3 d80a6bb0-dece-4eed-ba33-183cb0715938 009acd5ca8bca2844aa7c1cc22c47522 { 'aliquot_tag': 'ALQ_6ef92782', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00607.RNA-Seq.genomic.T.hg38 C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 bd6d2009-8b51-420d-9976-09d60de5d01e.rna_seq.genomic.gdc_realn.bam 7228486066 BAM genomic harmonized CPTAC3 186f46c2-77a3-4327-a4f3-27f42df0ca33 a4fbd701bc51fe1f565e2a0cd8a8d925 { 'aliquot_tag': 'ALQ_29595d52', 'gdc_sample_type': 'Primary Tumor' } +C3L-00607.RNA-Seq.R1_L001.T C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L001_R1_001.fastq.gz 3565751071 FASTQ R1_L001 unaligned CPTAC3 1029d950-d46f-4ee3-adc7-fcedfaaa9934 5e87225e4eed403e981a7353bb7817d2 { 'aliquot_tag': 'ALQ_29595d52', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00607.RNA-Seq.R1_L005.A C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTTGA_S18_L005_R1_001.fastq.gz 3654075527 FASTQ R1_L005 unaligned CPTAC3 9d6e4b39-0d25-48da-bffe-f3df9ba5c2ee 8c620947f2147e50cd4eca7a44fe294e { 'aliquot_tag': 'ALQ_6ef92782', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00607.RNA-Seq.R2_L001.T C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L001_R2_001.fastq.gz 3902396964 FASTQ R2_L001 unaligned CPTAC3 971e3386-6c90-4819-9eda-78abf0bd8792 678d02298f5419eabdef034520a146f4 { 'aliquot_tag': 'ALQ_29595d52', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00607.RNA-Seq.R2_L005.A C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTTGA_S18_L005_R2_001.fastq.gz 4031773432 FASTQ R2_L005 unaligned CPTAC3 4779af1c-584c-481b-90a0-b28c94879c8d 43cb877296159079221dec6d1917dca2 { 'aliquot_tag': 'ALQ_6ef92782', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-00607.RNA-Seq.transcriptome.A.hg38 C3L-00607 CCRCC RNA-Seq tissue_normal CPT0025060006 ddc9f20d-bc4a-4584-bb50-542bb6cead38.rna_seq.transcriptome.gdc_realn.bam 9296205585 BAM transcriptome harmonized CPTAC3 42f89af5-081f-4b1f-aab6-7a27bfd8a7e4 06b0446c565b2daf1d44c11927824d12 { 'aliquot_tag': 'ALQ_6ef92782', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00607.RNA-Seq.transcriptome.T.hg38 C3L-00607 CCRCC RNA-Seq tumor CPT0025050006 bd6d2009-8b51-420d-9976-09d60de5d01e.rna_seq.transcriptome.gdc_realn.bam 9809788419 BAM transcriptome harmonized CPTAC3 e4fb7776-1eb4-4224-afa8-1f1b99cbfbbd 4a3bfb02baabb672de934d93cf25de28 { 'aliquot_tag': 'ALQ_29595d52', 'gdc_sample_type': 'Primary Tumor' } C3L-00607.WGS.A C3L-00607 CCRCC WGS tissue_normal CPT0025060009 CPT0025060009.WholeGenome.RP-1303.bam 60196224520 BAM aligned CPTAC3 ecbe26b8-e7db-43d2-bed3-e26fb65e0076 74c3173267f678a5f911dac8c63b7525 { 'aliquot_tag': 'ALQ_fe463a13', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -3299,11 +3753,11 @@ C3L-00608.MethArray.Green.T C3L-00608 CCRCC Methylation Array tumor CPT039048000 C3L-00608.MethArray.Red.T C3L-00608 CCRCC Methylation Array tumor CPT0390480006 205549610123_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 7c20a1e5-ca93-488d-ad31-bc922a0ba436 84abe10501d8f84d9df57fc87e3935f6 { 'aliquot_tag': 'ALQ_7c87d4c1', 'gdc_sample_type': 'Primary Tumor' } C3L-00608.miRNA-Seq.T C3L-00608 CCRCC miRNA-Seq tumor CPT0390480009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCATTC_S35_L002_R1_001.unaln.bam 296089951 BAM unaligned CPTAC3 d25b1aad-c220-44e8-b8a4-8c77b7f14b70 5b8aa93ae0455ad6fcc1b890d2be6318 { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor' } C3L-00608.miRNA-Seq.T.hg38 C3L-00608 CCRCC miRNA-Seq tumor CPT0390480009 a5bef58a-6114-4f0d-a71a-0e62b6178dc9_mirnaseq_gdc_realn.bam 313775746 BAM harmonized CPTAC3 48cebf52-ad49-4413-8d5e-b306a03db662 3af76ec5f4cdc6ddd7236740b7953f64 { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor' } -C3L-00608.RNA-Seq.chimeric.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 594d4366-b95e-4418-ab38-69e60dcc4e56.rna_seq.chimeric.gdc_realn.bam 368365722 BAM chimeric harmonized CPTAC3 8ad353c4-5510-473e-991d-e0fab595a91f ff73e9f3dd7db249ee2a781dadaa1e6f { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor' } -C3L-00608.RNA-Seq.genomic.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 594d4366-b95e-4418-ab38-69e60dcc4e56.rna_seq.genomic.gdc_realn.bam 8400531318 BAM genomic harmonized CPTAC3 549e9c07-4e42-43dd-96eb-8ad7188e19ba c2116449f974f5f0b215035e264653fd { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor' } -C3L-00608.RNA-Seq.R1_L006.T C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATGGCATG-AAGGTACC_S19_L006_R1_001.fastq.gz 3965218141 FASTQ R1_L006 unaligned CPTAC3 fdcd0f9b-f5b3-48b2-9237-c3bf94ad1dc7 afbb9fe697f6e9681e4c193b91b135d0 { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor' } -C3L-00608.RNA-Seq.R2_L006.T C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATGGCATG-AAGGTACC_S19_L006_R2_001.fastq.gz 4487009468 FASTQ R2_L006 unaligned CPTAC3 8ff2ace2-2f50-4d0d-a54e-adf709e8c2b1 09cd5aea9268bcd1f91856f302e2f25f { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor' } -C3L-00608.RNA-Seq.transcriptome.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 594d4366-b95e-4418-ab38-69e60dcc4e56.rna_seq.transcriptome.gdc_realn.bam 8464404045 BAM transcriptome harmonized CPTAC3 be1b4d2f-1579-43c3-8299-2859a53556ec 3d99d33761ed926340d64b53f6ff0c5d { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor' } +C3L-00608.RNA-Seq.chimeric.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 d9418940-6d94-4826-9cfb-644825555adf.rna_seq.chimeric.gdc_realn.bam 368342961 BAM chimeric harmonized CPTAC3 96c68208-626b-43f9-9c24-5c32a8c52813 b8afe0a99eefbaf9e2d72aa4411aefb8 { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor' } +C3L-00608.RNA-Seq.genomic.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 d9418940-6d94-4826-9cfb-644825555adf.rna_seq.genomic.gdc_realn.bam 8407644954 BAM genomic harmonized CPTAC3 67c9747a-81cd-402e-949a-fa6a20a1aa77 3587ee382f5b36add7a782d1b19c8d3a { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor' } +C3L-00608.RNA-Seq.R1_L006.T C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATGGCATG-AAGGTACC_S19_L006_R1_001.fastq.gz 3965218141 FASTQ R1_L006 unaligned CPTAC3 fdcd0f9b-f5b3-48b2-9237-c3bf94ad1dc7 afbb9fe697f6e9681e4c193b91b135d0 { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00608.RNA-Seq.R2_L006.T C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATGGCATG-AAGGTACC_S19_L006_R2_001.fastq.gz 4487009468 FASTQ R2_L006 unaligned CPTAC3 8ff2ace2-2f50-4d0d-a54e-adf709e8c2b1 09cd5aea9268bcd1f91856f302e2f25f { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-00608.RNA-Seq.transcriptome.T.hg38 C3L-00608 CCRCC RNA-Seq tumor CPT0390480009 d9418940-6d94-4826-9cfb-644825555adf.rna_seq.transcriptome.gdc_realn.bam 9687433773 BAM transcriptome harmonized CPTAC3 34162df4-7490-4af1-8dff-ba2f42a6b067 23b4e5b68894649e72793a9498cc0c50 { 'aliquot_tag': 'ALQ_ec38c950', 'gdc_sample_type': 'Primary Tumor' } C3L-00608.WGS.N C3L-00608 CCRCC WGS blood_normal CPT0390540002 CPT0390540002.WholeGenome.RP-2158.bam 22546245686 BAM aligned CPTAC3 d2e5b96d-d209-4a5f-9dfe-87bd9e63b3b4 e7f83cb4c3f31732961461507cb92fd4 { 'aliquot_tag': 'ALQ_75462e7c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00608.WGS.N.hg38 C3L-00608 CCRCC WGS blood_normal CPT0390540002 8b563fdb-c01d-42e1-85c6-1e182545288b_wgs_gdc_realn.bam 70509286066 BAM harmonized CPTAC3 2b26c5d3-d8f9-47bf-8110-b7d21e25b580 7489e9fca5b258c44c69802e2b05b177 { 'aliquot_tag': 'ALQ_75462e7c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00608.WGS.T C3L-00608 CCRCC WGS tumor CPT0390480006 CPT0390480006.WholeGenome.RP-2158.bam 21625592296 BAM aligned CPTAC3 46dbc208-0865-4f44-ad9c-5b89f0d0bbf5 a429100567b01415205e9749d2e39f73 { 'aliquot_tag': 'ALQ_7c87d4c1', 'gdc_sample_type': 'Primary Tumor' } @@ -3317,9 +3771,9 @@ C3L-00610.MethArray.Red.T C3L-00610 CCRCC Methylation Array tumor CPT0025110009 C3L-00610.miRNA-Seq.T C3L-00610 CCRCC miRNA-Seq tumor CPT0025110006 180924_UNC31-K00269_0154_AHWTMLBBXX_CAGATC_S20_L001_R1_001.unaln.bam 258818398 BAM unaligned CPTAC3 33a94643-d0ae-44d5-ad58-6adceb3387a8 cfceab7a5f5c88db39c8dd744bedcefa { 'aliquot_tag': 'ALQ_17852837', 'gdc_sample_type': 'Primary Tumor' } C3L-00610.miRNA-Seq.T.hg38 C3L-00610 CCRCC miRNA-Seq tumor CPT0025110006 a326b125-78d5-4634-bab5-2fe733b4d68e_mirnaseq_gdc_realn.bam 291852118 BAM harmonized CPTAC3 25af5d47-4d77-4855-b905-359d8aef121a d7854887d3f833ba3dbb48d2ffb2e4d2 { 'aliquot_tag': 'ALQ_17852837', 'gdc_sample_type': 'Primary Tumor' } C3L-00610.RNA-Seq.chimeric.T.hg38 C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 c721d9ec-12e0-441c-8314-0d32994d1610.rna_seq.chimeric.gdc_realn.bam 71756286 BAM chimeric harmonized CPTAC3 4f84d918-ca4c-42b0-a36d-bdabc399406b 3018fa680aff9805d7f721695966c42d { 'aliquot_tag': 'ALQ_17852837', 'gdc_sample_type': 'Primary Tumor' } -C3L-00610.RNA-Seq.genomic.T.hg38 C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 c721d9ec-12e0-441c-8314-0d32994d1610.rna_seq.genomic.gdc_realn.bam 8475367775 BAM genomic harmonized CPTAC3 5ab66039-7227-4007-b971-fb83804c46c3 167f9a3b5c126bcff3b67862a153234e { 'aliquot_tag': 'ALQ_17852837', 'gdc_sample_type': 'Primary Tumor' } -C3L-00610.RNA-Seq.R1_L008.T C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S10_L008_R1_001.fastq.gz 3968452040 FASTQ R1_L008 unaligned CPTAC3 c0b30aa7-5d95-40a0-aea3-07e351caa9ec 8e66721b0056538073a37e704aaa00fb { 'aliquot_tag': 'ALQ_17852837', 'gdc_sample_type': 'Primary Tumor' } -C3L-00610.RNA-Seq.R2_L008.T C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S10_L008_R2_001.fastq.gz 4244509339 FASTQ R2_L008 unaligned CPTAC3 f82c169d-d8f8-4e98-8664-330850a873ce 2b4f0df69b7b2e3309b8d498db315bbc { 'aliquot_tag': 'ALQ_17852837', 'gdc_sample_type': 'Primary Tumor' } +C3L-00610.RNA-Seq.genomic.T.hg38 C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 c721d9ec-12e0-441c-8314-0d32994d1610.rna_seq.genomic.gdc_realn.bam 8475367775 BAM genomic harmonized CPTAC3 c63c95ea-90c1-4ac6-b67f-d1451302d010 167f9a3b5c126bcff3b67862a153234e { 'aliquot_tag': 'ALQ_17852837', 'gdc_sample_type': 'Primary Tumor' } +C3L-00610.RNA-Seq.R1_L008.T C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S10_L008_R1_001.fastq.gz 3968452040 FASTQ R1_L008 unaligned CPTAC3 c0b30aa7-5d95-40a0-aea3-07e351caa9ec 8e66721b0056538073a37e704aaa00fb { 'aliquot_tag': 'ALQ_17852837', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00610.RNA-Seq.R2_L008.T C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S10_L008_R2_001.fastq.gz 4244509339 FASTQ R2_L008 unaligned CPTAC3 f82c169d-d8f8-4e98-8664-330850a873ce 2b4f0df69b7b2e3309b8d498db315bbc { 'aliquot_tag': 'ALQ_17852837', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-00610.RNA-Seq.transcriptome.T.hg38 C3L-00610 CCRCC RNA-Seq tumor CPT0025110006 c721d9ec-12e0-441c-8314-0d32994d1610.rna_seq.transcriptome.gdc_realn.bam 10933765625 BAM transcriptome harmonized CPTAC3 df377a95-b492-4da4-a0aa-67615b852ccf 1d84c5757e0142e51382fd5b675599b6 { 'aliquot_tag': 'ALQ_17852837', 'gdc_sample_type': 'Primary Tumor' } C3L-00610.WGS.N C3L-00610 CCRCC WGS blood_normal CPT0029410002 CPT0029410002.WholeGenome.RP-1303.bam 62433229820 BAM aligned CPTAC3 2641c950-f284-4ebb-8fd8-ee6812dbef19 f98f414e271fa393fc7b654bd9d7ca76 { 'aliquot_tag': 'ALQ_878517e9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00610.WGS.N.hg38 C3L-00610 CCRCC WGS blood_normal CPT0029410002 1306f9b0-9606-4058-8e52-3c55f55459fb_gdc_realn.bam 91350155166 BAM harmonized CPTAC3 cf1f561b-bcc6-4e40-b09b-d57b1b9b6c70 896f7e0553de406f4d837006d140b1a4 { 'aliquot_tag': 'ALQ_878517e9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3333,11 +3787,11 @@ C3L-00614.MethArray.Green.Tpb C3L-00614 AML Methylation Array tumor_peripheral_b C3L-00614.MethArray.Red.Tpb C3L-00614 AML Methylation Array tumor_peripheral_blood CPT0100860002 203561620040_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 2254c51f-b519-43bb-9322-66eb77712179 1d68b6b921fe7575a6cfd3069c80a03b { 'aliquot_tag': 'ALQ_82a15d6f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00614.miRNA-Seq.Tpb C3L-00614 AML miRNA-Seq tumor_peripheral_blood CPT0100820002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGAAA_S19_L001_R1_001.unaln.bam 245076521 BAM unaligned CPTAC3 4f344299-d412-49c0-af90-7d638f18ea03 cc5e3f404474e12da25b37c2fa39a574 { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00614.miRNA-Seq.Tpb.hg38 C3L-00614 AML miRNA-Seq tumor_peripheral_blood CPT0100820002 a5b9642f-7fb4-4c33-ae12-d762869424dd_mirnaseq_gdc_realn.bam 263823776 BAM harmonized CPTAC3 2bc8c941-d543-41f7-b470-3f9b3ef61bb2 2cbe9f9a7967b9f8b0332ccca2689187 { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00614.RNA-Seq.chimeric.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 3875b5f1-209c-4ec1-815e-3dd69d22a6da.rna_seq.chimeric.gdc_realn.bam 30546087 BAM chimeric harmonized CPTAC3 0bdbd8f3-692f-49b0-9438-89804f9193c9 1c5272f58d1f573f5c9f34fc81c3c7c4 { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00614.RNA-Seq.genomic.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 3875b5f1-209c-4ec1-815e-3dd69d22a6da.rna_seq.genomic.gdc_realn.bam 8528640871 BAM genomic harmonized CPTAC3 d3af11bf-6b89-44ec-a48e-0bab4dc92fe1 559f19ad67cbdda6858928ed48bbe42b { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00614.RNA-Seq.R1_L006.Tpb C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGTAAGT-ACTCTATG_S38_L006_R1_001.fastq.gz 4135328135 FASTQ R1_L006 unaligned CPTAC3 2bf8703d-5fed-4b22-b691-88cfb6878a75 19d0801147e8f62b84957502c20da50b { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00614.RNA-Seq.R2_L006.Tpb C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGTAAGT-ACTCTATG_S38_L006_R2_001.fastq.gz 4804140710 FASTQ R2_L006 unaligned CPTAC3 08bf4689-a42c-4109-a788-26b0d2b9b71f a645ef8c930dbf06eb9c0be3a1c920d4 { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00614.RNA-Seq.transcriptome.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 3875b5f1-209c-4ec1-815e-3dd69d22a6da.rna_seq.transcriptome.gdc_realn.bam 11104914245 BAM transcriptome harmonized CPTAC3 28f96d8f-2b1f-47a3-b278-57e8eb6bafd3 ef37511d246021cfdfd22126d5595ab7 { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00614.RNA-Seq.chimeric.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 8cda5045-16f7-4ccb-b8b7-a9b2b1dadbc6.rna_seq.chimeric.gdc_realn.bam 30522074 BAM chimeric harmonized CPTAC3 0fc68c4c-2a33-4196-9710-8956d5412518 0940c957a768e6d70bad140c06e49dab { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00614.RNA-Seq.genomic.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 8cda5045-16f7-4ccb-b8b7-a9b2b1dadbc6.rna_seq.genomic.gdc_realn.bam 8528536865 BAM genomic harmonized CPTAC3 94d79d00-012d-4628-a6c2-08efbacac471 6c43beed2c6efa960eabb72169e9ab00 { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00614.RNA-Seq.R1_L006.Tpb C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGTAAGT-ACTCTATG_S38_L006_R1_001.fastq.gz 4135328135 FASTQ R1_L006 unaligned CPTAC3 2bf8703d-5fed-4b22-b691-88cfb6878a75 19d0801147e8f62b84957502c20da50b { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L006' } +C3L-00614.RNA-Seq.R2_L006.Tpb C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGTAAGT-ACTCTATG_S38_L006_R2_001.fastq.gz 4804140710 FASTQ R2_L006 unaligned CPTAC3 08bf4689-a42c-4109-a788-26b0d2b9b71f a645ef8c930dbf06eb9c0be3a1c920d4 { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L006' } +C3L-00614.RNA-Seq.transcriptome.Tpb.hg38 C3L-00614 AML RNA-Seq tumor_peripheral_blood CPT0100820002 8cda5045-16f7-4ccb-b8b7-a9b2b1dadbc6.rna_seq.transcriptome.gdc_realn.bam 12600962689 BAM transcriptome harmonized CPTAC3 a483be44-186b-4bc7-99e4-6580d164a2c7 642ac11ce02c38531d0145414a186a9e { 'aliquot_tag': 'ALQ_7721fbaf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00614.WGS.Nbc C3L-00614 AML WGS buccal_normal CPT0100780003 CPT0100780003.WholeGenome.RP-1303.bam 77844032437 BAM aligned CPTAC3 a11349ce-adc8-4f25-97ca-ce379191b64e 7709d0467634fd44d6573d106b974603 { 'aliquot_tag': 'ALQ_bbc0614d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00614.WGS.Nbc.hg38 C3L-00614 AML WGS buccal_normal CPT0100780003 982cbe51-15db-4db8-a0d3-fbedac2e1964_wgs_gdc_realn.bam 111429457255 BAM harmonized CPTAC3 a8b1aad9-afac-494b-a513-91889fe8be96 d84fadc9b1ed394ccd79c8d896ef8ebf { 'aliquot_tag': 'ALQ_bbc0614d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00614.WGS.Tpb C3L-00614 AML WGS tumor_peripheral_blood CPT0100860002 CPT0100860002.WholeGenome.RP-1303.bam 71597308162 BAM aligned CPTAC3 3db4f1be-37be-4292-92e6-953df83b6050 d2c34417819bae264ff575d480c3c098 { 'aliquot_tag': 'ALQ_82a15d6f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } @@ -3349,15 +3803,20 @@ C3L-00614.WXS.Tpb.hg38 C3L-00614 AML WXS tumor_peripheral_blood CPT0100860002 d7 C3L-00617.MethArray.Green.Tbm C3L-00617 AML Methylation Array tumor_bone_marrow CPT0325330002 205555390174_R08C01_Grn.idat 13677965 IDAT Green NA CPTAC3 ec2153a6-4b78-43f3-86d0-14c6c964a51a 8c907d8e2273c2d4c22def19c4a31c64 { 'aliquot_tag': 'ALQ_1e6d2280', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00617.MethArray.Red.Tbm C3L-00617 AML Methylation Array tumor_bone_marrow CPT0325330002 205555390174_R08C01_Red.idat 13677965 IDAT Red NA CPTAC3 ac763702-5267-414c-aaa0-5c917bc1f409 2e8cbe8882dfbd1143eaf4dff34d0ffb { 'aliquot_tag': 'ALQ_1e6d2280', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00617.miRNA-Seq.Tbm C3L-00617 AML miRNA-Seq tumor_bone_marrow CPT0325340002 210702_UNC32-K00270_0289_AHKJ22BBXY_CCGTCC_S8_L001_R1_001.unaln.bam 333211425 BAM unaligned CPTAC3 7e113971-7604-4219-8f6c-966af249b834 917932c3d9dd714756686711c585c270 { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00617.RNA-Seq.chimeric.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 33e42108-e72c-4dc4-9822-925bdaac7de8.rna_seq.chimeric.gdc_realn.bam 141144661 BAM chimeric harmonized CPTAC3 ee40b861-c9b1-400a-9c26-65151dfdf7fd 58622bcf319f9d1137e191d417892e81 { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00617.RNA-Seq.genomic.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 33e42108-e72c-4dc4-9822-925bdaac7de8.rna_seq.genomic.gdc_realn.bam 8521585036 BAM genomic harmonized CPTAC3 709c8d53-60ae-4459-8cf6-bb0a64603ce5 5d9bb42a3146bd7940536e8c8659f3f9 { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00617.RNA-Seq.R1_L005.Tbm C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 210319_UNC31-K00269_0296_AHKT37BBXY_CCATTCGA-GTTGTCCG_S17_L005_R1_001.fastq.gz 4548910658 FASTQ R1_L005 unaligned CPTAC3 4481a421-93e2-4023-ab56-355dd1c209e4 75a42dcb6a2c27df4c3bc3136199a64e { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00617.RNA-Seq.R2_L005.Tbm C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 210319_UNC31-K00269_0296_AHKT37BBXY_CCATTCGA-GTTGTCCG_S17_L005_R2_001.fastq.gz 4846840395 FASTQ R2_L005 unaligned CPTAC3 38596d93-afca-4dea-b256-bc13577c67a5 ab0d509c400799b8576d09dfc989d5b2 { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-00617.RNA-Seq.transcriptome.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 33e42108-e72c-4dc4-9822-925bdaac7de8.rna_seq.transcriptome.gdc_realn.bam 12434330322 BAM transcriptome harmonized CPTAC3 04248f3f-6a04-4ec1-b633-f63fcbc1dcd7 499f973878512e6ed038f25cf7f1c8fb { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00617.miRNA-Seq.Tbm.hg38 C3L-00617 AML miRNA-Seq tumor_bone_marrow CPT0325340002 5e68f287-7c56-4d45-aa85-3c130e8a250d_mirnaseq_gdc_realn.bam 361802466 BAM harmonized CPTAC3 f7e6b5f9-670b-4954-9703-0e2bd2e9c9cd a407dcbf9432d54ca00c5a0fa7498dc5 { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00617.RNA-Seq.chimeric.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 eee09c44-0e51-4dbb-be95-06bb8dc1e8fc.rna_seq.chimeric.gdc_realn.bam 141154956 BAM chimeric harmonized CPTAC3 6ec9393a-3873-4dbe-b686-34b5bbb031bd cf4896c829410b9504220a065b993f5d { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00617.RNA-Seq.genomic.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 eee09c44-0e51-4dbb-be95-06bb8dc1e8fc.rna_seq.genomic.gdc_realn.bam 8532145032 BAM genomic harmonized CPTAC3 ae3ab3e8-067b-46aa-b848-aada1942c5d7 1469c04181c8982918ca2374b7786f6f { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00617.RNA-Seq.R1_L005.Tbm C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 210319_UNC31-K00269_0296_AHKT37BBXY_CCATTCGA-GTTGTCCG_S17_L005_R1_001.fastq.gz 4548910658 FASTQ R1_L005 unaligned CPTAC3 4481a421-93e2-4023-ab56-355dd1c209e4 75a42dcb6a2c27df4c3bc3136199a64e { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-00617.RNA-Seq.R2_L005.Tbm C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 210319_UNC31-K00269_0296_AHKT37BBXY_CCATTCGA-GTTGTCCG_S17_L005_R2_001.fastq.gz 4846840395 FASTQ R2_L005 unaligned CPTAC3 38596d93-afca-4dea-b256-bc13577c67a5 ab0d509c400799b8576d09dfc989d5b2 { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-00617.RNA-Seq.transcriptome.Tbm.hg38 C3L-00617 AML RNA-Seq tumor_bone_marrow CPT0325340002 eee09c44-0e51-4dbb-be95-06bb8dc1e8fc.rna_seq.transcriptome.gdc_realn.bam 14591943825 BAM transcriptome harmonized CPTAC3 778f0d2b-4800-4dd1-a1a5-6b07db75b890 29af8a0c74655ed460fef3bceb110af7 { 'aliquot_tag': 'ALQ_ac4dfe90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00617.WGS.Nbc C3L-00617 AML WGS buccal_normal CPT0325360003 CPT0325360003.WholeGenome.RP-2158.bam 59907711900 BAM aligned CPTAC3 a199503b-401c-4823-8bfb-db4fa01fc84e 3f97328dc174e8b9bd20d314edbf2f2c { 'aliquot_tag': 'ALQ_a18a9d66', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-00617.WGS.Nbc.hg38 C3L-00617 AML WGS buccal_normal CPT0325360003 a4794da6-1610-49ca-a3c9-b703572c2990_wgs_gdc_realn.bam 211054240907 BAM harmonized CPTAC3 4fe3fee3-b27e-4159-9dc8-088f09e974f5 0fad9eb32ed40412541406f46c0b3f0c { 'aliquot_tag': 'ALQ_a18a9d66', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00617.WGS.Tbm C3L-00617 AML WGS tumor_bone_marrow CPT0325330002 CPT0325330002.WholeGenome.RP-2158.bam 58236728537 BAM aligned CPTAC3 49d38d6a-f48d-484b-9ce2-40fff8f8110b 8cbecb676f9b966bfd1e48911c7e5578 { 'aliquot_tag': 'ALQ_1e6d2280', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00617.WGS.Tbm.hg38 C3L-00617 AML WGS tumor_bone_marrow CPT0325330002 8889a993-7ee4-4bca-9883-0b3c3a7d3fb6_wgs_gdc_realn.bam 164255332846 BAM harmonized CPTAC3 98eaebef-92a8-4da4-96f8-21ef7564d427 518768f551539b7a1823442ffb7e7d40 { 'aliquot_tag': 'ALQ_1e6d2280', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00617.WXS.Nbc C3L-00617 AML WXS buccal_normal CPT0325360003 CPT0325360003.WholeExome.RP-1303.bam 28022105365 BAM aligned CPTAC3 55803aaa-b8b3-498e-8358-a701f570a515 c11f4e2e9b39fe21bd23f8a2e5b5d9dd { 'aliquot_tag': 'ALQ_a18a9d66', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-00617.WXS.Nbc.hg38 C3L-00617 AML WXS buccal_normal CPT0325360003 a4794da6-1610-49ca-a3c9-b703572c2990_wxs_gdc_realn.bam 37483160612 BAM harmonized CPTAC3 330d8216-962d-487b-9f5b-c57c7ffb7706 cb6baf43df330f79eef32a28d7cdf086 { 'aliquot_tag': 'ALQ_a18a9d66', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00617.WXS.Tbm C3L-00617 AML WXS tumor_bone_marrow CPT0325330002 CPT0325330002.WholeExome.RP-1303.bam 24132715634 BAM aligned CPTAC3 d63ff93d-2633-4955-a867-891d78cb13ac 2d95831874cb348232d4ce7932460e0f { 'aliquot_tag': 'ALQ_1e6d2280', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-00617.WXS.Tbm.hg38 C3L-00617 AML WXS tumor_bone_marrow CPT0325330002 8889a993-7ee4-4bca-9883-0b3c3a7d3fb6_wxs_gdc_realn.bam 33271906056 BAM harmonized CPTAC3 39e6f6b4-818a-422f-8ffe-543ff935c9c2 00e7d8404f8b659168f12cd29ccd42b0 { 'aliquot_tag': 'ALQ_1e6d2280', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-00622.MethArray.Green.T C3L-00622 PDA Methylation Array tumor CPT0081360007 202184990008_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 6b6be9d3-137b-44b5-b042-61225f851152 a70fd682c14535b650498540b8bb3587 { 'aliquot_tag': 'ALQ_fae55d61', 'gdc_sample_type': 'Primary Tumor' } C3L-00622.MethArray.Red.T C3L-00622 PDA Methylation Array tumor CPT0081360007 202184990008_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 a022ac28-5dda-41d3-8be3-f8550e900121 988adceb0cd0c47fe2ee2057014ae79c { 'aliquot_tag': 'ALQ_fae55d61', 'gdc_sample_type': 'Primary Tumor' } C3L-00622.miRNA-Seq.A C3L-00622 PDA miRNA-Seq tissue_normal CPT0081390006 181108_UNC31-K00269_0162_AH255GBBXY_CAACTA_S5_L001_R1_001.unaln.bam 188653161 BAM unaligned CPTAC3 383a8f83-fe88-4901-bf49-94f1bae48e2e fce6215ed915c4b2a7188ff19f14eccc { 'aliquot_tag': 'ALQ_fb2fa26', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -3368,10 +3827,10 @@ C3L-00622.RNA-Seq.chimeric.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal CPT0081390 C3L-00622.RNA-Seq.chimeric.T.hg38 C3L-00622 PDA RNA-Seq tumor CPT0081360010 5c75bab7-2a69-41c9-b11b-d5174c399ab7.rna_seq.chimeric.gdc_realn.bam 68534286 BAM chimeric harmonized CPTAC3 b7e8128a-1005-43e9-b241-15cdb1be4786 e2276cd0acf9fe90fc4ecba9f2139763 { 'aliquot_tag': 'ALQ_7d9af983', 'gdc_sample_type': 'Primary Tumor' } C3L-00622.RNA-Seq.genomic.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 27bf0c1e-d087-49fe-8137-c8c733090d3a.rna_seq.genomic.gdc_realn.bam 8441057751 BAM genomic harmonized CPTAC3 b79f6597-a4be-4a2a-9aa8-86017f4946ad 15e11f9b9f0a87720cfda55c7044ac7b { 'aliquot_tag': 'ALQ_fb2fa26', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00622.RNA-Seq.genomic.T.hg38 C3L-00622 PDA RNA-Seq tumor CPT0081360010 5c75bab7-2a69-41c9-b11b-d5174c399ab7.rna_seq.genomic.gdc_realn.bam 9986173536 BAM genomic harmonized CPTAC3 fd760bc3-b653-4fdd-8d81-f1b1143b0950 52f30a0c6d92de64dcabf4df61b4248d { 'aliquot_tag': 'ALQ_7d9af983', 'gdc_sample_type': 'Primary Tumor' } -C3L-00622.RNA-Seq.R1_L001.T C3L-00622 PDA RNA-Seq tumor CPT0081360010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4356844919 FASTQ R1_L001 unaligned CPTAC3 49777911-e523-49e1-b3cd-8c9c7691a5d2 fb0833a672566e5cd72991c4f45da7d6 { 'aliquot_tag': 'ALQ_7d9af983', 'gdc_sample_type': 'Primary Tumor' } -C3L-00622.RNA-Seq.R1_L008.A C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3332254867 FASTQ R1_L008 unaligned CPTAC3 ee0d436f-ad91-401e-9b1a-8b0633bbbfe9 74744a18b76304579abf0227c7c79666 { 'aliquot_tag': 'ALQ_fb2fa26', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00622.RNA-Seq.R2_L001.T C3L-00622 PDA RNA-Seq tumor CPT0081360010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L001_R2_001.fastq.gz 4718562450 FASTQ R2_L001 unaligned CPTAC3 c273c1af-0c01-462a-baf6-6503fc50bbec 9d19362e9bb8655b84ad125925940952 { 'aliquot_tag': 'ALQ_7d9af983', 'gdc_sample_type': 'Primary Tumor' } -C3L-00622.RNA-Seq.R2_L008.A C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R2_001.fastq.gz 3763713751 FASTQ R2_L008 unaligned CPTAC3 a511911a-2894-4e73-bd51-e368bafbff63 b526082dbba6fec3ca36fc4274f7d615 { 'aliquot_tag': 'ALQ_fb2fa26', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00622.RNA-Seq.R1_L001.T C3L-00622 PDA RNA-Seq tumor CPT0081360010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4356844919 FASTQ R1_L001 unaligned CPTAC3 49777911-e523-49e1-b3cd-8c9c7691a5d2 fb0833a672566e5cd72991c4f45da7d6 { 'aliquot_tag': 'ALQ_7d9af983', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00622.RNA-Seq.R1_L008.A C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3332254867 FASTQ R1_L008 unaligned CPTAC3 ee0d436f-ad91-401e-9b1a-8b0633bbbfe9 74744a18b76304579abf0227c7c79666 { 'aliquot_tag': 'ALQ_fb2fa26', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00622.RNA-Seq.R2_L001.T C3L-00622 PDA RNA-Seq tumor CPT0081360010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L001_R2_001.fastq.gz 4718562450 FASTQ R2_L001 unaligned CPTAC3 c273c1af-0c01-462a-baf6-6503fc50bbec 9d19362e9bb8655b84ad125925940952 { 'aliquot_tag': 'ALQ_7d9af983', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00622.RNA-Seq.R2_L008.A C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L008_R2_001.fastq.gz 3763713751 FASTQ R2_L008 unaligned CPTAC3 a511911a-2894-4e73-bd51-e368bafbff63 b526082dbba6fec3ca36fc4274f7d615 { 'aliquot_tag': 'ALQ_fb2fa26', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00622.RNA-Seq.transcriptome.A.hg38 C3L-00622 PDA RNA-Seq tissue_normal CPT0081390006 27bf0c1e-d087-49fe-8137-c8c733090d3a.rna_seq.transcriptome.gdc_realn.bam 9094546256 BAM transcriptome harmonized CPTAC3 9a51f989-7ef5-482a-9c5e-fa1e3791d4ac 479e070d5715fac28fd4e80989a624cd { 'aliquot_tag': 'ALQ_fb2fa26', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00622.RNA-Seq.transcriptome.T.hg38 C3L-00622 PDA RNA-Seq tumor CPT0081360010 5c75bab7-2a69-41c9-b11b-d5174c399ab7.rna_seq.transcriptome.gdc_realn.bam 11342145682 BAM transcriptome harmonized CPTAC3 abb26467-2647-45a1-81a9-f1f96c65a4b6 cace5dcaacb3f2156ed0cf19a33ce666 { 'aliquot_tag': 'ALQ_7d9af983', 'gdc_sample_type': 'Primary Tumor' } C3L-00622.Targeted.T C3L-00622 PDA Targeted Sequencing tumor CPT0081360007_1 CPT0081360007_1.CustomSelection.RP-1303.PDO-18786.bam 5958499527 BAM aligned CPTAC3 940f5482-3c2b-473b-a0bc-7d0255567628 cbb1dcaad04a272b6e44f71b1893278b { 'aliquot_tag': 'ALQ_4418de14', 'gdc_sample_type': 'Primary Tumor' } @@ -3393,9 +3852,9 @@ C3L-00625.MethArray.Red.T C3L-00625 PDA Methylation Array tumor CPT0081470007 20 C3L-00625.miRNA-Seq.T C3L-00625 PDA miRNA-Seq tumor CPT0081470010 181113_UNC31-K00269_0164_AH23NNBBXY_TATAAT_S20_L001_R1_001.unaln.bam 261216042 BAM unaligned CPTAC3 81385cdc-dacc-4e70-825f-be2e84d1e46f 55570112a1ae7592c7e36a9d7b221684 { 'aliquot_tag': 'ALQ_5dffe08b', 'gdc_sample_type': 'Primary Tumor' } C3L-00625.miRNA-Seq.T.hg38 C3L-00625 PDA miRNA-Seq tumor CPT0081470010 cefb842d-0eee-4a00-8ccb-541a4655d842_mirnaseq_gdc_realn.bam 287470974 BAM harmonized CPTAC3 ea0a3383-e4b2-4cfa-b2e3-ba930473d1b3 0fd3c5751e37ef298ed9d468998959c0 { 'aliquot_tag': 'ALQ_5dffe08b', 'gdc_sample_type': 'Primary Tumor' } C3L-00625.RNA-Seq.chimeric.T.hg38 C3L-00625 PDA RNA-Seq tumor CPT0081470010 c2a3c84b-8b90-45c0-88b9-00cf3999e2b0.rna_seq.chimeric.gdc_realn.bam 40055294 BAM chimeric harmonized CPTAC3 2d69979a-35f7-4b4d-8b19-493a41330948 873e70376e244db0b05eab9e5302a44d { 'aliquot_tag': 'ALQ_5dffe08b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00625.RNA-Seq.genomic.T.hg38 C3L-00625 PDA RNA-Seq tumor CPT0081470010 c2a3c84b-8b90-45c0-88b9-00cf3999e2b0.rna_seq.genomic.gdc_realn.bam 9261751336 BAM genomic harmonized CPTAC3 39b1c80d-4616-4ca6-87f6-61bf8a389391 e8299e90e8070f3cc1b66c8ed0aa88a6 { 'aliquot_tag': 'ALQ_5dffe08b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00625.RNA-Seq.R1_L001.T C3L-00625 PDA RNA-Seq tumor CPT0081470010 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3611516224 FASTQ R1_L001 unaligned CPTAC3 637a1123-2d19-4fb8-8c2b-62b5244519c7 a64ac1353e2b3dd303b2e4ab64aac463 { 'aliquot_tag': 'ALQ_5dffe08b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00625.RNA-Seq.R2_L001.T C3L-00625 PDA RNA-Seq tumor CPT0081470010 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 3919468106 FASTQ R2_L001 unaligned CPTAC3 cc431b64-163e-4e98-a110-cb5692802d83 a99a010e9102f83437abee79861afbc5 { 'aliquot_tag': 'ALQ_5dffe08b', 'gdc_sample_type': 'Primary Tumor' } +C3L-00625.RNA-Seq.genomic.T.hg38 C3L-00625 PDA RNA-Seq tumor CPT0081470010 c2a3c84b-8b90-45c0-88b9-00cf3999e2b0.rna_seq.genomic.gdc_realn.bam 9261751336 BAM genomic harmonized CPTAC3 24ebd715-743a-4e7b-8a74-8772d7ada81c e8299e90e8070f3cc1b66c8ed0aa88a6 { 'aliquot_tag': 'ALQ_5dffe08b', 'gdc_sample_type': 'Primary Tumor' } +C3L-00625.RNA-Seq.R1_L001.T C3L-00625 PDA RNA-Seq tumor CPT0081470010 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3611516224 FASTQ R1_L001 unaligned CPTAC3 637a1123-2d19-4fb8-8c2b-62b5244519c7 a64ac1353e2b3dd303b2e4ab64aac463 { 'aliquot_tag': 'ALQ_5dffe08b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00625.RNA-Seq.R2_L001.T C3L-00625 PDA RNA-Seq tumor CPT0081470010 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 3919468106 FASTQ R2_L001 unaligned CPTAC3 cc431b64-163e-4e98-a110-cb5692802d83 a99a010e9102f83437abee79861afbc5 { 'aliquot_tag': 'ALQ_5dffe08b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-00625.RNA-Seq.transcriptome.T.hg38 C3L-00625 PDA RNA-Seq tumor CPT0081470010 c2a3c84b-8b90-45c0-88b9-00cf3999e2b0.rna_seq.transcriptome.gdc_realn.bam 9052602368 BAM transcriptome harmonized CPTAC3 951f536d-b743-4497-9555-113a6a4edc19 fc71a4c086c2fc267db9b51c4cd63ad9 { 'aliquot_tag': 'ALQ_5dffe08b', 'gdc_sample_type': 'Primary Tumor' } C3L-00625.Targeted.T C3L-00625 PDA Targeted Sequencing tumor CPT0081470007_1 CPT0081470007_1.CustomSelection.RP-1303.PDO-18786.bam 6419961426 BAM aligned CPTAC3 e6b40928-551e-427f-9b54-5e97c72fb0dc dffc15ba072a185875679a104b831795 { 'aliquot_tag': 'ALQ_e8aadcb9', 'gdc_sample_type': 'Primary Tumor' } C3L-00625.Targeted.T.hg38 C3L-00625 PDA Targeted Sequencing tumor CPT0081470007_1 e9f04d79-6cd2-4618-98ae-f75b2bf403bc_targetedsequencing_gdc_realn.bam 8980121130 BAM harmonized CPTAC3 88d073f8-53af-489c-bb3e-cf9ace8467b8 b9b2a455e3b0b6f4a43967309ed3fc74 { 'aliquot_tag': 'ALQ_e8aadcb9', 'gdc_sample_type': 'Primary Tumor' } @@ -3417,11 +3876,11 @@ C3L-00629.ADD_8df97ee7.miRNA-Seq.T C3L-00629 CM miRNA-Seq tumor CPT0017250010 18 C3L-00629.ADD_8df97ee7.miRNA-Seq.T.hg38 C3L-00629 CM miRNA-Seq tumor CPT0017250010 a98e11a7-b08e-4453-abd5-49c7dff19f53_mirnaseq_gdc_realn.bam 124123039 BAM harmonized CPTAC3 ecf19dd9-e32f-49f4-a80f-af585e904d59 2b163f8ed04eaabf70010a706cbd474c { 'aliquot_tag': 'ADD_8df97ee7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested' } C3L-00629.MethArray.Green.T C3L-00629 CM Methylation Array tumor CPT0017250007 202184990008_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0892796a-fc76-4af3-a325-6ac1c72ca01f c0481b068205815d3d743c8a4e1a9fed { 'aliquot_tag': 'ALQ_a86da05', 'gdc_sample_type': 'Primary Tumor' } C3L-00629.MethArray.Red.T C3L-00629 CM Methylation Array tumor CPT0017250007 202184990008_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 8b4324ba-25a1-4025-a0f0-76495502d34a 7b7f8d0323f4b2f25ebb572967e0e867 { 'aliquot_tag': 'ALQ_a86da05', 'gdc_sample_type': 'Primary Tumor' } -C3L-00629.RNA-Seq.chimeric.T.hg38 C3L-00629 CM RNA-Seq tumor CPT0017250014 119443df-0c3e-49ea-bdef-f4dfa0c1f2f7.rna_seq.chimeric.gdc_realn.bam 52556801 BAM chimeric harmonized CPTAC3 c22213c4-7c0c-44cb-ab0f-3300cfda24bf 8c088d319833d9ed6593910db46a5e03 { 'aliquot_tag': 'ALQ_8a94bafe', 'gdc_sample_type': 'Primary Tumor' } -C3L-00629.RNA-Seq.genomic.T.hg38 C3L-00629 CM RNA-Seq tumor CPT0017250014 119443df-0c3e-49ea-bdef-f4dfa0c1f2f7.rna_seq.genomic.gdc_realn.bam 12626118670 BAM genomic harmonized CPTAC3 19487b43-4d42-496d-a845-5617f470a7b6 3d634114d35898fefa1479450554097f { 'aliquot_tag': 'ALQ_8a94bafe', 'gdc_sample_type': 'Primary Tumor' } -C3L-00629.RNA-Seq.R1_L004.T C3L-00629 CM RNA-Seq tumor CPT0017250014 171011_UNC31-K00269_0086_AHLJLCBBXX_TAGCTT_S13_L004_R1_001.fastq.gz 5321994380 FASTQ R1_L004 unaligned CPTAC3 dc60c8bd-59ca-4f9f-b6ad-ea12fcec0691 950f1a93cebc317546638b16f9b2f85b { 'aliquot_tag': 'ALQ_8a94bafe', 'gdc_sample_type': 'Primary Tumor' } -C3L-00629.RNA-Seq.R2_L004.T C3L-00629 CM RNA-Seq tumor CPT0017250014 171011_UNC31-K00269_0086_AHLJLCBBXX_TAGCTT_S13_L004_R2_001.fastq.gz 5675144981 FASTQ R2_L004 unaligned CPTAC3 64b1a836-2617-417e-99be-e78fb00fd641 36c21f0aead3467409aafd8a4eec5e4c { 'aliquot_tag': 'ALQ_8a94bafe', 'gdc_sample_type': 'Primary Tumor' } -C3L-00629.RNA-Seq.transcriptome.T.hg38 C3L-00629 CM RNA-Seq tumor CPT0017250014 119443df-0c3e-49ea-bdef-f4dfa0c1f2f7.rna_seq.transcriptome.gdc_realn.bam 11886699684 BAM transcriptome harmonized CPTAC3 fbfb60a2-3f64-4ffe-9737-73925171e691 af2792c48bd90f14e1fa7793e145e4e5 { 'aliquot_tag': 'ALQ_8a94bafe', 'gdc_sample_type': 'Primary Tumor' } +C3L-00629.RNA-Seq.chimeric.T.hg38 C3L-00629 CM RNA-Seq tumor CPT0017250014 21bd2073-aac0-42cb-bf98-4c9eb9b7ca62.rna_seq.chimeric.gdc_realn.bam 52555538 BAM chimeric harmonized CPTAC3 f8fb2258-0937-44cc-a92e-1e7c4869766a 49493c801458629a2af100b1debf71ab { 'aliquot_tag': 'ALQ_8a94bafe', 'gdc_sample_type': 'Primary Tumor' } +C3L-00629.RNA-Seq.genomic.T.hg38 C3L-00629 CM RNA-Seq tumor CPT0017250014 21bd2073-aac0-42cb-bf98-4c9eb9b7ca62.rna_seq.genomic.gdc_realn.bam 12610340300 BAM genomic harmonized CPTAC3 95126a35-f30c-4fbe-8a76-0f0b1a5951c6 9043cbac599bc477d2139d5d2f36b729 { 'aliquot_tag': 'ALQ_8a94bafe', 'gdc_sample_type': 'Primary Tumor' } +C3L-00629.RNA-Seq.R1_L004.T C3L-00629 CM RNA-Seq tumor CPT0017250014 171011_UNC31-K00269_0086_AHLJLCBBXX_TAGCTT_S13_L004_R1_001.fastq.gz 5321994380 FASTQ R1_L004 unaligned CPTAC3 dc60c8bd-59ca-4f9f-b6ad-ea12fcec0691 950f1a93cebc317546638b16f9b2f85b { 'aliquot_tag': 'ALQ_8a94bafe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00629.RNA-Seq.R2_L004.T C3L-00629 CM RNA-Seq tumor CPT0017250014 171011_UNC31-K00269_0086_AHLJLCBBXX_TAGCTT_S13_L004_R2_001.fastq.gz 5675144981 FASTQ R2_L004 unaligned CPTAC3 64b1a836-2617-417e-99be-e78fb00fd641 36c21f0aead3467409aafd8a4eec5e4c { 'aliquot_tag': 'ALQ_8a94bafe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00629.RNA-Seq.transcriptome.T.hg38 C3L-00629 CM RNA-Seq tumor CPT0017250014 21bd2073-aac0-42cb-bf98-4c9eb9b7ca62.rna_seq.transcriptome.gdc_realn.bam 13117413155 BAM transcriptome harmonized CPTAC3 c7f7c15a-a086-4df6-b9d5-a4f79a7a7b83 3ae35ed971bdb4c7f0024a2fef064b65 { 'aliquot_tag': 'ALQ_8a94bafe', 'gdc_sample_type': 'Primary Tumor' } C3L-00629.WGS.N C3L-00629 CM WGS blood_normal CPT0015350002 CPT0015350002.WholeGenome.RP-1303.bam 86960616885 BAM aligned CPTAC3 85d3e257-1d23-42e4-847e-e6a286e261ee 36c4b2bf5a848f5d328a2f23aefe4171 { 'aliquot_tag': 'ALQ_262fec06', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00629.WGS.N.hg38 C3L-00629 CM WGS blood_normal CPT0015350002 d2ba11cc-9d03-42d9-9c81-67137c29652f_gdc_realn.bam 136984362715 BAM harmonized CPTAC3 27c298c4-200e-40af-b5bc-6495cddef868 bb7a5b9c40ea51c0c56826a0897a8f00 { 'aliquot_tag': 'ALQ_262fec06', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00629.WGS.T C3L-00629 CM WGS tumor CPT0017250007 CPT0017250007.WholeGenome.RP-1303.bam 71599847598 BAM aligned CPTAC3 dd7d3552-65fb-4c27-bdfa-aeaccb8b0cae 54e7290fabca5db6fef027143af458a9 { 'aliquot_tag': 'ALQ_a86da05', 'gdc_sample_type': 'Primary Tumor' } @@ -3434,11 +3893,11 @@ C3L-00631.MethArray.Green.T C3L-00631 GBM Methylation Array tumor CPT0017910007 C3L-00631.MethArray.Red.T C3L-00631 GBM Methylation Array tumor CPT0017910007 202178770111_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 82f032cc-59a7-4dd4-892e-b8d36e027cd9 3df7d87822f8172e0b51e474778fd700 { 'aliquot_tag': 'ALQ_95c18c06', 'gdc_sample_type': 'Primary Tumor' } C3L-00631.miRNA-Seq.T C3L-00631 GBM miRNA-Seq tumor CPT0017910010 181012_UNC32-K00270_0124_AH223CBBXY_GTCCGC_S39_L004_R1_001.unaln.bam 216421854 BAM unaligned CPTAC3 72606440-5b14-4b81-b4b3-3b3773e79ffd 8bb5bf4fb7ce264b0f0d9fd087b66dbc { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor' } C3L-00631.miRNA-Seq.T.hg38 C3L-00631 GBM miRNA-Seq tumor CPT0017910010 b438d773-ed89-49e3-878a-c1564556108f_mirnaseq_gdc_realn.bam 243800298 BAM harmonized CPTAC3 0cca7129-9ee5-4c6f-9fa9-a30c3fd2f00e 3351beac97b9b0d4a8f665080104d3fb { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00631.RNA-Seq.chimeric.T.hg38 C3L-00631 GBM RNA-Seq tumor CPT0017910010 931c3d78-0f54-4792-8df5-1f12516ebebe.rna_seq.chimeric.gdc_realn.bam 110803886 BAM chimeric harmonized CPTAC3 4a423ad2-01c1-44bb-909e-ce6db5eec925 765b4eb5e7686e523985afa3f580549d { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00631.RNA-Seq.genomic.T.hg38 C3L-00631 GBM RNA-Seq tumor CPT0017910010 931c3d78-0f54-4792-8df5-1f12516ebebe.rna_seq.genomic.gdc_realn.bam 9227715665 BAM genomic harmonized CPTAC3 203b829b-2aa2-45ba-8f53-c6fd40ad6c29 fec1af77bdd68782487969eb7792d358 { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00631.RNA-Seq.R1_L003.T C3L-00631 GBM RNA-Seq tumor CPT0017910010 170818_UNC32-K00270_0051_BHLCCHBBXX_GATCAG_S11_L003_R1_001.fastq.gz 4260788061 FASTQ R1_L003 unaligned CPTAC3 dc56f593-4b2c-43a3-8510-eb5fd3c5a636 a74be937472c3d93997ddc25f956f6a3 { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00631.RNA-Seq.R2_L003.T C3L-00631 GBM RNA-Seq tumor CPT0017910010 170818_UNC32-K00270_0051_BHLCCHBBXX_GATCAG_S11_L003_R2_001.fastq.gz 4563328441 FASTQ R2_L003 unaligned CPTAC3 f07fda88-50e4-419c-a63e-495af06950f9 a14ac68374e73764fa2f146ab3b32fda { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00631.RNA-Seq.transcriptome.T.hg38 C3L-00631 GBM RNA-Seq tumor CPT0017910010 931c3d78-0f54-4792-8df5-1f12516ebebe.rna_seq.transcriptome.gdc_realn.bam 9461620383 BAM transcriptome harmonized CPTAC3 95b3ab2c-d7da-4add-8d42-e23bfd54c76b 7d3fabe1fbd3ce9f1e9fcb99b7be4aa7 { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00631.RNA-Seq.chimeric.T.hg38 C3L-00631 GBM RNA-Seq tumor CPT0017910010 6d13d995-ea2d-4943-8f56-e48645dab265.rna_seq.chimeric.gdc_realn.bam 110768172 BAM chimeric harmonized CPTAC3 42022a60-ba15-4050-8086-19790ad5cd57 bf8f83f42fb4a6cc4a377d66fddc0629 { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00631.RNA-Seq.genomic.T.hg38 C3L-00631 GBM RNA-Seq tumor CPT0017910010 6d13d995-ea2d-4943-8f56-e48645dab265.rna_seq.genomic.gdc_realn.bam 9229116221 BAM genomic harmonized CPTAC3 6586c146-4a70-417f-8bf4-14eaef610660 962d16e96bb6e6e5a17b438992d5af88 { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00631.RNA-Seq.R1_L003.T C3L-00631 GBM RNA-Seq tumor CPT0017910010 170818_UNC32-K00270_0051_BHLCCHBBXX_GATCAG_S11_L003_R1_001.fastq.gz 4260788061 FASTQ R1_L003 unaligned CPTAC3 dc56f593-4b2c-43a3-8510-eb5fd3c5a636 a74be937472c3d93997ddc25f956f6a3 { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00631.RNA-Seq.R2_L003.T C3L-00631 GBM RNA-Seq tumor CPT0017910010 170818_UNC32-K00270_0051_BHLCCHBBXX_GATCAG_S11_L003_R2_001.fastq.gz 4563328441 FASTQ R2_L003 unaligned CPTAC3 f07fda88-50e4-419c-a63e-495af06950f9 a14ac68374e73764fa2f146ab3b32fda { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00631.RNA-Seq.transcriptome.T.hg38 C3L-00631 GBM RNA-Seq tumor CPT0017910010 6d13d995-ea2d-4943-8f56-e48645dab265.rna_seq.transcriptome.gdc_realn.bam 10891791562 BAM transcriptome harmonized CPTAC3 968f44f8-9f47-42c7-b838-ede90e208c2b cf53be04dec84384fdd7677764c45dd8 { 'aliquot_tag': 'ALQ_12be28e4', 'gdc_sample_type': 'Primary Tumor' } C3L-00631.WGS.N C3L-00631 GBM WGS blood_normal CPT0015580002 CPT0015580002.WholeGenome.RP-1303.bam 84709549868 BAM aligned CPTAC3 b27fa888-5b67-45f2-9b83-6c6da383a8a1 031e59a9ad4d80a83f8ee53b7a555f13 { 'aliquot_tag': 'ALQ_8e6cbaa', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00631.WGS.N.hg38 C3L-00631 GBM WGS blood_normal CPT0015580002 ba314412-f2aa-4afc-a303-f484d4d6475b_gdc_realn.bam 134087049398 BAM harmonized CPTAC3 7c125c1d-248b-4df3-a9f8-83a889bd5d56 b2c76613f9b8ba32c68ef853ca570817 { 'aliquot_tag': 'ALQ_8e6cbaa', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00631.WGS.T C3L-00631 GBM WGS tumor CPT0017910007 CPT0017910007.WholeGenome.RP-1303.bam 66754726054 BAM aligned CPTAC3 fec7e1a5-cff2-44cc-b8bd-b4a574fc5be1 1b408e6bfa46e7392fa975632c40f912 { 'aliquot_tag': 'ALQ_95c18c06', 'gdc_sample_type': 'Primary Tumor' } @@ -3457,12 +3916,12 @@ C3L-00640.miRNA-Seq.T C3L-00640 PDA miRNA-Seq tumor CPT0064520007 181108_UNC31-K C3L-00640.miRNA-Seq.T.hg38 C3L-00640 PDA miRNA-Seq tumor CPT0064520007 8e057a91-a53b-4e85-bdf9-3a8bd834f4b5_mirnaseq_gdc_realn.bam 216877342 BAM harmonized CPTAC3 47d0e081-f2e3-4f35-9c81-1516fe07dd8f a97f1c95ec2729455db0529caf76b5a6 { 'aliquot_tag': 'ALQ_9e8e2529', 'gdc_sample_type': 'Primary Tumor' } C3L-00640.RNA-Seq.chimeric.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 382c05bd-dcf4-426f-890c-f00b2fc45e72.rna_seq.chimeric.gdc_realn.bam 134305622 BAM chimeric harmonized CPTAC3 6f62f766-236c-4a05-b2ab-f473fffe6c4f 23b091067beaf6e8c6d41286c2f2a209 { 'aliquot_tag': 'ALQ_21699acf', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00640.RNA-Seq.chimeric.T.hg38 C3L-00640 PDA RNA-Seq tumor CPT0064520007 07a7e1a7-582a-455a-976e-8afc6a38ac2c.rna_seq.chimeric.gdc_realn.bam 51723158 BAM chimeric harmonized CPTAC3 d3b590f2-568e-4659-8d30-19cd6ae7ba99 68d033c8a3fcd84f3dcad83dd790a469 { 'aliquot_tag': 'ALQ_9e8e2529', 'gdc_sample_type': 'Primary Tumor' } -C3L-00640.RNA-Seq.genomic.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 382c05bd-dcf4-426f-890c-f00b2fc45e72.rna_seq.genomic.gdc_realn.bam 8486025625 BAM genomic harmonized CPTAC3 559718c2-5550-4643-8414-5502c5b1c22a 3bede5f6063622cd6b1b18aeefb5f1e7 { 'aliquot_tag': 'ALQ_21699acf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00640.RNA-Seq.genomic.T.hg38 C3L-00640 PDA RNA-Seq tumor CPT0064520007 07a7e1a7-582a-455a-976e-8afc6a38ac2c.rna_seq.genomic.gdc_realn.bam 6470793023 BAM genomic harmonized CPTAC3 400c5102-022e-4e11-b2d9-845359b3ca69 ac1a026859f5b849e4245158454ee8d6 { 'aliquot_tag': 'ALQ_9e8e2529', 'gdc_sample_type': 'Primary Tumor' } -C3L-00640.RNA-Seq.R1_L003.T C3L-00640 PDA RNA-Seq tumor CPT0064520007 170823_UNC31-K00269_0076_BHLCTFBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 2855966677 FASTQ R1_L003 unaligned CPTAC3 33806087-ff71-44e1-86ac-67e5e48af603 b076f55b38e4cfc909761c6e6765e54d { 'aliquot_tag': 'ALQ_9e8e2529', 'gdc_sample_type': 'Primary Tumor' } -C3L-00640.RNA-Seq.R1_L008.A C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L008_R1_001.fastq.gz 3689683237 FASTQ R1_L008 unaligned CPTAC3 6cc3e251-b039-4f7a-9f24-f013c999082e 6ae014b2ae3de4b2e6e3b079baa1f4a6 { 'aliquot_tag': 'ALQ_21699acf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00640.RNA-Seq.R2_L003.T C3L-00640 PDA RNA-Seq tumor CPT0064520007 170823_UNC31-K00269_0076_BHLCTFBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 3207024272 FASTQ R2_L003 unaligned CPTAC3 1aae486e-75c6-44a9-a69a-56459137c071 33fd77ce5f4979fd79b6c434e7e0fa5e { 'aliquot_tag': 'ALQ_9e8e2529', 'gdc_sample_type': 'Primary Tumor' } -C3L-00640.RNA-Seq.R2_L008.A C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L008_R2_001.fastq.gz 4124785029 FASTQ R2_L008 unaligned CPTAC3 1dad8c71-f547-4abf-bfeb-4c82d1f0a3a9 afa49be09a1c4b8a3839816bcd6c8033 { 'aliquot_tag': 'ALQ_21699acf', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00640.RNA-Seq.genomic.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 382c05bd-dcf4-426f-890c-f00b2fc45e72.rna_seq.genomic.gdc_realn.bam 8486025625 BAM genomic harmonized CPTAC3 9b857ade-e233-41cf-9075-1b03eb78bd0e 3bede5f6063622cd6b1b18aeefb5f1e7 { 'aliquot_tag': 'ALQ_21699acf', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00640.RNA-Seq.genomic.T.hg38 C3L-00640 PDA RNA-Seq tumor CPT0064520007 07a7e1a7-582a-455a-976e-8afc6a38ac2c.rna_seq.genomic.gdc_realn.bam 6470793023 BAM genomic harmonized CPTAC3 f2232260-0ac5-4572-9555-afc79d89a817 ac1a026859f5b849e4245158454ee8d6 { 'aliquot_tag': 'ALQ_9e8e2529', 'gdc_sample_type': 'Primary Tumor' } +C3L-00640.RNA-Seq.R1_L003.T C3L-00640 PDA RNA-Seq tumor CPT0064520007 170823_UNC31-K00269_0076_BHLCTFBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 2855966677 FASTQ R1_L003 unaligned CPTAC3 33806087-ff71-44e1-86ac-67e5e48af603 b076f55b38e4cfc909761c6e6765e54d { 'aliquot_tag': 'ALQ_9e8e2529', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00640.RNA-Seq.R1_L008.A C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L008_R1_001.fastq.gz 3689683237 FASTQ R1_L008 unaligned CPTAC3 6cc3e251-b039-4f7a-9f24-f013c999082e 6ae014b2ae3de4b2e6e3b079baa1f4a6 { 'aliquot_tag': 'ALQ_21699acf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00640.RNA-Seq.R2_L003.T C3L-00640 PDA RNA-Seq tumor CPT0064520007 170823_UNC31-K00269_0076_BHLCTFBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 3207024272 FASTQ R2_L003 unaligned CPTAC3 1aae486e-75c6-44a9-a69a-56459137c071 33fd77ce5f4979fd79b6c434e7e0fa5e { 'aliquot_tag': 'ALQ_9e8e2529', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00640.RNA-Seq.R2_L008.A C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L008_R2_001.fastq.gz 4124785029 FASTQ R2_L008 unaligned CPTAC3 1dad8c71-f547-4abf-bfeb-4c82d1f0a3a9 afa49be09a1c4b8a3839816bcd6c8033 { 'aliquot_tag': 'ALQ_21699acf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00640.RNA-Seq.transcriptome.A.hg38 C3L-00640 PDA RNA-Seq tissue_normal CPT0064570006 382c05bd-dcf4-426f-890c-f00b2fc45e72.rna_seq.transcriptome.gdc_realn.bam 10522513183 BAM transcriptome harmonized CPTAC3 a6aac9d9-ac79-44ba-8472-f08c2a04cd48 5015c37df4c7b6a89c6e5854cf92bf5c { 'aliquot_tag': 'ALQ_21699acf', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00640.RNA-Seq.transcriptome.T.hg38 C3L-00640 PDA RNA-Seq tumor CPT0064520007 07a7e1a7-582a-455a-976e-8afc6a38ac2c.rna_seq.transcriptome.gdc_realn.bam 8085496375 BAM transcriptome harmonized CPTAC3 b009c09e-96fc-4787-8eb5-ce53724d3806 5cd4da70ad4dfe0134ae05ed5bde248b { 'aliquot_tag': 'ALQ_9e8e2529', 'gdc_sample_type': 'Primary Tumor' } C3L-00640.Targeted.T C3L-00640 PDA Targeted Sequencing tumor CPT0064520010_1 CPT0064520010_1.CustomSelection.RP-1303.PDO-18786.bam 5235727527 BAM aligned CPTAC3 8f62a0d4-8d30-4371-88dc-992d7e461b9c cfb819810b19ea8390d146a455d569bb { 'aliquot_tag': 'ALQ_9f95f79c', 'gdc_sample_type': 'Primary Tumor' } @@ -3485,11 +3944,11 @@ C3L-00671.MethArray.Green.T C3L-00671 GBM Methylation Array tumor CPT0064450010 C3L-00671.MethArray.Red.T C3L-00671 GBM Methylation Array tumor CPT0064450010 202163550072_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 a3d5fa26-98a5-4a98-8966-b9daa6571a75 43e09a9a8069f7d6112e764b01abdef5 { 'aliquot_tag': 'ALQ_608d8e7e', 'gdc_sample_type': 'Primary Tumor' } C3L-00671.miRNA-Seq.T C3L-00671 GBM miRNA-Seq tumor CPT0064450007 181108_UNC31-K00269_0163_BH23TVBBXY_TGACCA_S4_L001_R1_001.unaln.bam 212390119 BAM unaligned CPTAC3 399e1b57-9879-44e6-a54c-0a5a762908d3 cea2a548bb563b6893a432a9afbfa5e2 { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor' } C3L-00671.miRNA-Seq.T.hg38 C3L-00671 GBM miRNA-Seq tumor CPT0064450007 72a55a41-653a-4d06-b7eb-9a719a1e95ea_mirnaseq_gdc_realn.bam 234616373 BAM harmonized CPTAC3 f3bf2f8a-15ae-4871-b5ad-4f7f14a527dc c31a711404799cd355cbca7608d86031 { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00671.RNA-Seq.chimeric.T.hg38 C3L-00671 GBM RNA-Seq tumor CPT0064450007 1c751169-0574-4860-af7f-b033bc36abd6.rna_seq.chimeric.gdc_realn.bam 95004166 BAM chimeric harmonized CPTAC3 ac1047fd-2697-4ea7-91c6-0795ddf72cb6 f526392f2a85acc1b6a2f0535abc4ab6 { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00671.RNA-Seq.genomic.T.hg38 C3L-00671 GBM RNA-Seq tumor CPT0064450007 1c751169-0574-4860-af7f-b033bc36abd6.rna_seq.genomic.gdc_realn.bam 8863704175 BAM genomic harmonized CPTAC3 c6c3e874-4646-41da-b882-80dbcbe4d3ce 94034cc1415568ff27a1813f7ca3dc42 { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00671.RNA-Seq.R1_L003.T C3L-00671 GBM RNA-Seq tumor CPT0064450007 170823_UNC31-K00269_0076_BHLCTFBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4172993945 FASTQ R1_L003 unaligned CPTAC3 2756606c-5c75-49f9-95d2-6d016582c20b dbadbfd38f729a1b5e22fec03c75695e { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00671.RNA-Seq.R2_L003.T C3L-00671 GBM RNA-Seq tumor CPT0064450007 170823_UNC31-K00269_0076_BHLCTFBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 4484440615 FASTQ R2_L003 unaligned CPTAC3 a27bde88-b3d1-436b-ac01-0887eab16663 e31be052619702d8fd94a72c91058f9a { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00671.RNA-Seq.transcriptome.T.hg38 C3L-00671 GBM RNA-Seq tumor CPT0064450007 1c751169-0574-4860-af7f-b033bc36abd6.rna_seq.transcriptome.gdc_realn.bam 8345854018 BAM transcriptome harmonized CPTAC3 7be2bea1-5a0a-45c7-ade8-924f9c549dd1 164248117cf3387c16dcff4682720fb8 { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00671.RNA-Seq.chimeric.T.hg38 C3L-00671 GBM RNA-Seq tumor CPT0064450007 57f4476e-a918-474a-a7f3-13ffc4411f73.rna_seq.chimeric.gdc_realn.bam 94986655 BAM chimeric harmonized CPTAC3 c3045cd6-a628-4732-97d9-34e746f0b83b b36a03f2d63df03998a28f91b212dc11 { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00671.RNA-Seq.genomic.T.hg38 C3L-00671 GBM RNA-Seq tumor CPT0064450007 57f4476e-a918-474a-a7f3-13ffc4411f73.rna_seq.genomic.gdc_realn.bam 8864477519 BAM genomic harmonized CPTAC3 c83c02ab-0c88-4e97-ad56-df5ea4f84e14 f1926438d8927d31f1f1ec6194966c41 { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00671.RNA-Seq.R1_L003.T C3L-00671 GBM RNA-Seq tumor CPT0064450007 170823_UNC31-K00269_0076_BHLCTFBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4172993945 FASTQ R1_L003 unaligned CPTAC3 2756606c-5c75-49f9-95d2-6d016582c20b dbadbfd38f729a1b5e22fec03c75695e { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00671.RNA-Seq.R2_L003.T C3L-00671 GBM RNA-Seq tumor CPT0064450007 170823_UNC31-K00269_0076_BHLCTFBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 4484440615 FASTQ R2_L003 unaligned CPTAC3 a27bde88-b3d1-436b-ac01-0887eab16663 e31be052619702d8fd94a72c91058f9a { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00671.RNA-Seq.transcriptome.T.hg38 C3L-00671 GBM RNA-Seq tumor CPT0064450007 57f4476e-a918-474a-a7f3-13ffc4411f73.rna_seq.transcriptome.gdc_realn.bam 9544598564 BAM transcriptome harmonized CPTAC3 6c8eafbf-d054-4334-a61a-630dca997fd5 b1937874bce815a5b75d270466febb88 { 'aliquot_tag': 'ALQ_e7f22a9c', 'gdc_sample_type': 'Primary Tumor' } C3L-00671.WGS.N C3L-00671 GBM WGS blood_normal CPT0066650002 CPT0066650002.WholeGenome.RP-1303.bam 74977824124 BAM aligned CPTAC3 925c59a1-8604-4958-a005-0ef88faf84ad 88388d37b63bbd5a064383ba3a574797 { 'aliquot_tag': 'ALQ_4dcf6e31', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00671.WGS.N.hg38 C3L-00671 GBM WGS blood_normal CPT0066650002 48fc7b46-f9a5-4936-9ac5-d76e81657ec8_gdc_realn.bam 112723889609 BAM harmonized CPTAC3 ead64768-7a50-4e91-99ac-cbd78dd958d4 b54640315914936d6564bc7c5b7f02a5 { 'aliquot_tag': 'ALQ_4dcf6e31', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00671.WGS.T C3L-00671 GBM WGS tumor CPT0064450010 CPT0064450010.WholeGenome.RP-1303.bam 72134336559 BAM aligned CPTAC3 4b13b4b4-a1c9-4dbe-8f5e-98a5e547c1b5 31983b69eef659672e49153784373892 { 'aliquot_tag': 'ALQ_608d8e7e', 'gdc_sample_type': 'Primary Tumor' } @@ -3503,9 +3962,9 @@ C3L-00674.MethArray.Red.T C3L-00674 GBM Methylation Array tumor CPT0064650009 20 C3L-00674.miRNA-Seq.T C3L-00674 GBM miRNA-Seq tumor CPT0064650006 181113_UNC31-K00269_0164_AH23NNBBXY_TACAGC_S19_L001_R1_001.unaln.bam 190407441 BAM unaligned CPTAC3 871bc308-0400-45f3-8938-afca148bc753 668e27b4ab24f296cdf907fd31127615 { 'aliquot_tag': 'ALQ_dd3dbb01', 'gdc_sample_type': 'Primary Tumor' } C3L-00674.miRNA-Seq.T.hg38 C3L-00674 GBM miRNA-Seq tumor CPT0064650006 30e4ac2a-bd5f-4644-a3d4-573cccac81f2_mirnaseq_gdc_realn.bam 211611405 BAM harmonized CPTAC3 a3f87ee0-718d-48c8-90b5-e79220afcb9d cb4a14fdf1700a0ec42429ef7b48f0aa { 'aliquot_tag': 'ALQ_dd3dbb01', 'gdc_sample_type': 'Primary Tumor' } C3L-00674.RNA-Seq.chimeric.T.hg38 C3L-00674 GBM RNA-Seq tumor CPT0064650006 166baf7b-6f56-4108-b9b2-191a623f6092.rna_seq.chimeric.gdc_realn.bam 33800023 BAM chimeric harmonized CPTAC3 de076b7d-5570-47ce-9db2-e3b16c68d6e2 eb2ddf749418c1b9376729819cc0a93e { 'aliquot_tag': 'ALQ_dd3dbb01', 'gdc_sample_type': 'Primary Tumor' } -C3L-00674.RNA-Seq.genomic.T.hg38 C3L-00674 GBM RNA-Seq tumor CPT0064650006 166baf7b-6f56-4108-b9b2-191a623f6092.rna_seq.genomic.gdc_realn.bam 9280943548 BAM genomic harmonized CPTAC3 2d5a9e21-d9ff-43bd-83b8-b4337d6c58e7 6d9e1f3aa013532f797b609847dd01dd { 'aliquot_tag': 'ALQ_dd3dbb01', 'gdc_sample_type': 'Primary Tumor' } -C3L-00674.RNA-Seq.R1_L003.T C3L-00674 GBM RNA-Seq tumor CPT0064650006 170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R1_001.fastq.gz 4303463091 FASTQ R1_L003 unaligned CPTAC3 7e77417b-9b2c-4504-827c-af04a22624be 1090ca720babee6564cc6a44c5226cc4 { 'aliquot_tag': 'ALQ_dd3dbb01', 'gdc_sample_type': 'Primary Tumor' } -C3L-00674.RNA-Seq.R2_L003.T C3L-00674 GBM RNA-Seq tumor CPT0064650006 170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R2_001.fastq.gz 4600073376 FASTQ R2_L003 unaligned CPTAC3 eaf91490-e4f5-470e-83fd-9df23bc5a93a e690d2d973a92790da8975f1bb2ed9d6 { 'aliquot_tag': 'ALQ_dd3dbb01', 'gdc_sample_type': 'Primary Tumor' } +C3L-00674.RNA-Seq.genomic.T.hg38 C3L-00674 GBM RNA-Seq tumor CPT0064650006 166baf7b-6f56-4108-b9b2-191a623f6092.rna_seq.genomic.gdc_realn.bam 9280943548 BAM genomic harmonized CPTAC3 38b70c75-2f50-497c-8cba-35b3ef485f52 6d9e1f3aa013532f797b609847dd01dd { 'aliquot_tag': 'ALQ_dd3dbb01', 'gdc_sample_type': 'Primary Tumor' } +C3L-00674.RNA-Seq.R1_L003.T C3L-00674 GBM RNA-Seq tumor CPT0064650006 170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R1_001.fastq.gz 4303463091 FASTQ R1_L003 unaligned CPTAC3 7e77417b-9b2c-4504-827c-af04a22624be 1090ca720babee6564cc6a44c5226cc4 { 'aliquot_tag': 'ALQ_dd3dbb01', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00674.RNA-Seq.R2_L003.T C3L-00674 GBM RNA-Seq tumor CPT0064650006 170830_UNC31-K00269_0078_AHLCVMBBXX_GAGTGG_S11_L003_R2_001.fastq.gz 4600073376 FASTQ R2_L003 unaligned CPTAC3 eaf91490-e4f5-470e-83fd-9df23bc5a93a e690d2d973a92790da8975f1bb2ed9d6 { 'aliquot_tag': 'ALQ_dd3dbb01', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-00674.RNA-Seq.transcriptome.T.hg38 C3L-00674 GBM RNA-Seq tumor CPT0064650006 166baf7b-6f56-4108-b9b2-191a623f6092.rna_seq.transcriptome.gdc_realn.bam 10733575831 BAM transcriptome harmonized CPTAC3 ac186626-d75d-4762-8615-31bd9bc75028 98af3812ca44421254bc9e6c5cabd793 { 'aliquot_tag': 'ALQ_dd3dbb01', 'gdc_sample_type': 'Primary Tumor' } C3L-00674.WGS.N C3L-00674 GBM WGS blood_normal CPT0066670002 CPT0066670002.WholeGenome.RP-1303.bam 78380437858 BAM aligned CPTAC3 eb6ec959-77c9-4c70-8bbd-726817a98b17 fefd1a15233b2e7d9f9bbd3b121bea2c { 'aliquot_tag': 'ALQ_370f3d51', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00674.WGS.N.hg38 C3L-00674 GBM WGS blood_normal CPT0066670002 7a56ec48-005d-401e-b8fc-30a60472483d_gdc_realn.bam 117728414212 BAM harmonized CPTAC3 8eb43b54-434f-4d96-884d-0f1d3a9cdc7b 99d0c1701c0627cbcaba4e9c1a2c0037 { 'aliquot_tag': 'ALQ_370f3d51', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3520,9 +3979,9 @@ C3L-00677.MethArray.Red.T C3L-00677 GBM Methylation Array tumor CPT0071100006 20 C3L-00677.miRNA-Seq.T C3L-00677 GBM miRNA-Seq tumor CPT0071100009 181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L006_R1_001.unaln.bam 209563675 BAM unaligned CPTAC3 ae052b15-588d-4596-af58-46662b3e852a e3cf384ff3306531dae0642a8ef564c7 { 'aliquot_tag': 'ALQ_6f53661', 'gdc_sample_type': 'Primary Tumor' } C3L-00677.miRNA-Seq.T.hg38 C3L-00677 GBM miRNA-Seq tumor CPT0071100009 d7481d68-fcff-4ec1-a2d5-1c837aada39a_mirnaseq_gdc_realn.bam 233302361 BAM harmonized CPTAC3 e4ff461b-7daf-4037-9290-4ddab4fb139d 172fe0fc7da7a4287b9cebedc7feac3d { 'aliquot_tag': 'ALQ_6f53661', 'gdc_sample_type': 'Primary Tumor' } C3L-00677.RNA-Seq.chimeric.T.hg38 C3L-00677 GBM RNA-Seq tumor CPT0071100009 b2d1e197-8003-4751-8d87-448fbdd1c597.rna_seq.chimeric.gdc_realn.bam 49364752 BAM chimeric harmonized CPTAC3 9e78092c-adea-46cc-97ee-14f67043faed 510701c2d7d05c76a187371623036b6c { 'aliquot_tag': 'ALQ_6f53661', 'gdc_sample_type': 'Primary Tumor' } -C3L-00677.RNA-Seq.genomic.T.hg38 C3L-00677 GBM RNA-Seq tumor CPT0071100009 b2d1e197-8003-4751-8d87-448fbdd1c597.rna_seq.genomic.gdc_realn.bam 9224989980 BAM genomic harmonized CPTAC3 34a71469-7796-46de-adbc-613750aedbe6 346abb978df452b60b6ed624401766fd { 'aliquot_tag': 'ALQ_6f53661', 'gdc_sample_type': 'Primary Tumor' } -C3L-00677.RNA-Seq.R1_L007.T C3L-00677 GBM RNA-Seq tumor CPT0071100009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R1_001.fastq.gz 4173547985 FASTQ R1_L007 unaligned CPTAC3 304fea20-f8c8-4481-b569-d4f292f18ac7 488157bf931467293d12358ef83a4bb5 { 'aliquot_tag': 'ALQ_6f53661', 'gdc_sample_type': 'Primary Tumor' } -C3L-00677.RNA-Seq.R2_L007.T C3L-00677 GBM RNA-Seq tumor CPT0071100009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4396146449 FASTQ R2_L007 unaligned CPTAC3 792f7658-8838-4de8-956f-b0680b8609eb 044db6c08036f03955215ebde642d940 { 'aliquot_tag': 'ALQ_6f53661', 'gdc_sample_type': 'Primary Tumor' } +C3L-00677.RNA-Seq.genomic.T.hg38 C3L-00677 GBM RNA-Seq tumor CPT0071100009 b2d1e197-8003-4751-8d87-448fbdd1c597.rna_seq.genomic.gdc_realn.bam 9224989980 BAM genomic harmonized CPTAC3 1d031db5-efff-4ec6-af8e-7855b32cf89e 346abb978df452b60b6ed624401766fd { 'aliquot_tag': 'ALQ_6f53661', 'gdc_sample_type': 'Primary Tumor' } +C3L-00677.RNA-Seq.R1_L007.T C3L-00677 GBM RNA-Seq tumor CPT0071100009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R1_001.fastq.gz 4173547985 FASTQ R1_L007 unaligned CPTAC3 304fea20-f8c8-4481-b569-d4f292f18ac7 488157bf931467293d12358ef83a4bb5 { 'aliquot_tag': 'ALQ_6f53661', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00677.RNA-Seq.R2_L007.T C3L-00677 GBM RNA-Seq tumor CPT0071100009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4396146449 FASTQ R2_L007 unaligned CPTAC3 792f7658-8838-4de8-956f-b0680b8609eb 044db6c08036f03955215ebde642d940 { 'aliquot_tag': 'ALQ_6f53661', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-00677.RNA-Seq.transcriptome.T.hg38 C3L-00677 GBM RNA-Seq tumor CPT0071100009 b2d1e197-8003-4751-8d87-448fbdd1c597.rna_seq.transcriptome.gdc_realn.bam 9050301878 BAM transcriptome harmonized CPTAC3 8872e6dd-cce4-43d4-ad39-419250d91479 83fabfa483431eb349ad6d85369e1cb4 { 'aliquot_tag': 'ALQ_6f53661', 'gdc_sample_type': 'Primary Tumor' } C3L-00677.WGS.N C3L-00677 GBM WGS blood_normal CPT0071960002 CPT0071960002.WholeGenome.RP-1303.bam 62320693548 BAM aligned CPTAC3 2bb7a42a-27a8-427d-98de-306a282eeabf 1febf3d5b690c27f5a87239397bd63ef { 'aliquot_tag': 'ALQ_f2349824', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00677.WGS.N.hg38 C3L-00677 GBM WGS blood_normal CPT0071960002 5cee818c-61e8-4441-bd9a-5c984cde9c6b_gdc_realn.bam 94179524762 BAM harmonized CPTAC3 3c36b7bb-4d3d-4702-94f1-4618d96cbe82 f69151043c0d0fd2cf73ae839fddbcfc { 'aliquot_tag': 'ALQ_f2349824', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3537,9 +3996,9 @@ C3L-00765.MethArray.Red.T C3L-00765 CCRCC Methylation Array tumor CPT0015910006 C3L-00765.miRNA-Seq.T C3L-00765 CCRCC miRNA-Seq tumor CPT0015910008 181113_UNC31-K00269_0164_AH23NNBBXY_CATGGC_S10_L003_R1_001.unaln.bam 271893346 BAM unaligned CPTAC3 daf7c5f2-42a6-4133-9f30-6d4efedc70cc b5efef11720d9c179e96b26eabd9ace0 { 'aliquot_tag': 'ALQ_92e180be', 'gdc_sample_type': 'Primary Tumor' } C3L-00765.miRNA-Seq.T.hg38 C3L-00765 CCRCC miRNA-Seq tumor CPT0015910008 7106fd9b-ff19-427f-abec-4d9bb2dbce09_mirnaseq_gdc_realn.bam 309300392 BAM harmonized CPTAC3 b019bf27-084f-4150-a277-8d588282123f 1e350a8573cfa2446dde0449154808e7 { 'aliquot_tag': 'ALQ_92e180be', 'gdc_sample_type': 'Primary Tumor' } C3L-00765.RNA-Seq.chimeric.T.hg38 C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 75896b58-0375-49c8-961b-662c5495ceca.rna_seq.chimeric.gdc_realn.bam 91205230 BAM chimeric harmonized CPTAC3 0c43f2a9-fc46-40c0-9361-50f0ae2990ff 25a9a4f2999e566717b236e5ee63b51b { 'aliquot_tag': 'ALQ_92e180be', 'gdc_sample_type': 'Primary Tumor' } -C3L-00765.RNA-Seq.genomic.T.hg38 C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 75896b58-0375-49c8-961b-662c5495ceca.rna_seq.genomic.gdc_realn.bam 7661869384 BAM genomic harmonized CPTAC3 21d0803b-795a-48f8-8afa-2aa6a9c16c8a fc7d5b35a2e68da1d0c6b21e75b13f82 { 'aliquot_tag': 'ALQ_92e180be', 'gdc_sample_type': 'Primary Tumor' } -C3L-00765.RNA-Seq.R1_L002.T C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3650442725 FASTQ R1_L002 unaligned CPTAC3 d87a8aa1-7a2a-4637-9b19-543b5bc959b2 04aae6c1231999eb788ed942c820bae8 { 'aliquot_tag': 'ALQ_92e180be', 'gdc_sample_type': 'Primary Tumor' } -C3L-00765.RNA-Seq.R2_L002.T C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4016717982 FASTQ R2_L002 unaligned CPTAC3 3b56ffa0-2871-4d85-b663-d6c666343b72 47fcf06657f37f6ef5abfcda7b59571f { 'aliquot_tag': 'ALQ_92e180be', 'gdc_sample_type': 'Primary Tumor' } +C3L-00765.RNA-Seq.genomic.T.hg38 C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 75896b58-0375-49c8-961b-662c5495ceca.rna_seq.genomic.gdc_realn.bam 7661869384 BAM genomic harmonized CPTAC3 462f7b46-4438-4602-97b1-8e12fe2a785c fc7d5b35a2e68da1d0c6b21e75b13f82 { 'aliquot_tag': 'ALQ_92e180be', 'gdc_sample_type': 'Primary Tumor' } +C3L-00765.RNA-Seq.R1_L002.T C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3650442725 FASTQ R1_L002 unaligned CPTAC3 d87a8aa1-7a2a-4637-9b19-543b5bc959b2 04aae6c1231999eb788ed942c820bae8 { 'aliquot_tag': 'ALQ_92e180be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00765.RNA-Seq.R2_L002.T C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 170823_UNC31-K00269_0076_BHLCTFBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4016717982 FASTQ R2_L002 unaligned CPTAC3 3b56ffa0-2871-4d85-b663-d6c666343b72 47fcf06657f37f6ef5abfcda7b59571f { 'aliquot_tag': 'ALQ_92e180be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-00765.RNA-Seq.transcriptome.T.hg38 C3L-00765 CCRCC RNA-Seq tumor CPT0015910008 75896b58-0375-49c8-961b-662c5495ceca.rna_seq.transcriptome.gdc_realn.bam 8730220593 BAM transcriptome harmonized CPTAC3 9cb7b9c0-9fbc-4f7b-94da-c0bfe2a64d5b 8df68a250501e62d2d9fdda0048ee55f { 'aliquot_tag': 'ALQ_92e180be', 'gdc_sample_type': 'Primary Tumor' } C3L-00765.WGS.N C3L-00765 CCRCC WGS blood_normal CPT0018310001 CPT0018310001.WholeGenome.RP-1303.bam 66991096444 BAM aligned CPTAC3 5d99c71e-0455-4d03-b145-c41209857978 e7f441a7f12daec7c30b9ce3c14a4259 { 'aliquot_tag': 'ALQ_2b717abc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00765.WGS.N.hg38 C3L-00765 CCRCC WGS blood_normal CPT0018310001 309ea7b2-acb9-483e-b522-14e1bcc1518f_gdc_realn.bam 100395994243 BAM harmonized CPTAC3 2da471be-93f2-4674-82d7-93c868ab4faa 23aeb79bd19d828bdff83d6be85040fc { 'aliquot_tag': 'ALQ_2b717abc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3554,9 +4013,9 @@ C3L-00766.MethArray.Red.T C3L-00766 CCRCC Methylation Array tumor CPT0025170009 C3L-00766.miRNA-Seq.T C3L-00766 CCRCC miRNA-Seq tumor CPT0025170006 181113_UNC31-K00269_0164_AH23NNBBXY_ATTCCT_S3_L003_R1_001.unaln.bam 277923704 BAM unaligned CPTAC3 ff007739-de65-4113-b468-e75bb802de5d a0560ffc50c7569738975453f76a4884 { 'aliquot_tag': 'ALQ_98c5dd97', 'gdc_sample_type': 'Primary Tumor' } C3L-00766.miRNA-Seq.T.hg38 C3L-00766 CCRCC miRNA-Seq tumor CPT0025170006 ec13b3c7-3d76-44fd-985d-de6545a78064_mirnaseq_gdc_realn.bam 305366484 BAM harmonized CPTAC3 2e47f06e-082a-44c9-88b4-a7ee0a71a1ed a080ab8ff34220d85b0cba29ec852920 { 'aliquot_tag': 'ALQ_98c5dd97', 'gdc_sample_type': 'Primary Tumor' } C3L-00766.RNA-Seq.chimeric.T.hg38 C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 6ddc8f58-2c55-46da-a59e-b5081e6e2063.rna_seq.chimeric.gdc_realn.bam 67050574 BAM chimeric harmonized CPTAC3 de104199-26d3-4ba1-85fe-fe31ca2522cd 477de5ca2dbfd9f3a0cf240e9f9f83d3 { 'aliquot_tag': 'ALQ_98c5dd97', 'gdc_sample_type': 'Primary Tumor' } -C3L-00766.RNA-Seq.genomic.T.hg38 C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 6ddc8f58-2c55-46da-a59e-b5081e6e2063.rna_seq.genomic.gdc_realn.bam 9701576714 BAM genomic harmonized CPTAC3 36e1be4b-ffed-487b-85e3-a1d53eb66f03 23ffb65ccedcefa3c20af6fa201ed9bb { 'aliquot_tag': 'ALQ_98c5dd97', 'gdc_sample_type': 'Primary Tumor' } -C3L-00766.RNA-Seq.R1_L008.T C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTCCGC_S13_L008_R1_001.fastq.gz 4618158717 FASTQ R1_L008 unaligned CPTAC3 440a7243-ea6e-46a5-99ac-cc1602d1d0de 1cd3bc6d5f805cc8fb484b58b5a713ee { 'aliquot_tag': 'ALQ_98c5dd97', 'gdc_sample_type': 'Primary Tumor' } -C3L-00766.RNA-Seq.R2_L008.T C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTCCGC_S13_L008_R2_001.fastq.gz 5124550137 FASTQ R2_L008 unaligned CPTAC3 698425b6-73ab-4bb5-a2c1-6e1cdeb6b719 7cc4270b6e1c60fd9df0ac0f858d1bb3 { 'aliquot_tag': 'ALQ_98c5dd97', 'gdc_sample_type': 'Primary Tumor' } +C3L-00766.RNA-Seq.genomic.T.hg38 C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 6ddc8f58-2c55-46da-a59e-b5081e6e2063.rna_seq.genomic.gdc_realn.bam 9701576714 BAM genomic harmonized CPTAC3 0c37a3ce-3851-4636-acfd-55357f1514d1 23ffb65ccedcefa3c20af6fa201ed9bb { 'aliquot_tag': 'ALQ_98c5dd97', 'gdc_sample_type': 'Primary Tumor' } +C3L-00766.RNA-Seq.R1_L008.T C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTCCGC_S13_L008_R1_001.fastq.gz 4618158717 FASTQ R1_L008 unaligned CPTAC3 440a7243-ea6e-46a5-99ac-cc1602d1d0de 1cd3bc6d5f805cc8fb484b58b5a713ee { 'aliquot_tag': 'ALQ_98c5dd97', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00766.RNA-Seq.R2_L008.T C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTCCGC_S13_L008_R2_001.fastq.gz 5124550137 FASTQ R2_L008 unaligned CPTAC3 698425b6-73ab-4bb5-a2c1-6e1cdeb6b719 7cc4270b6e1c60fd9df0ac0f858d1bb3 { 'aliquot_tag': 'ALQ_98c5dd97', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-00766.RNA-Seq.transcriptome.T.hg38 C3L-00766 CCRCC RNA-Seq tumor CPT0025170006 6ddc8f58-2c55-46da-a59e-b5081e6e2063.rna_seq.transcriptome.gdc_realn.bam 12007593326 BAM transcriptome harmonized CPTAC3 49ac173f-8bfd-4362-a511-d1aabaf40b98 17c111b1b5c55c3a9cde346a7064faa5 { 'aliquot_tag': 'ALQ_98c5dd97', 'gdc_sample_type': 'Primary Tumor' } C3L-00766.WGS.N C3L-00766 CCRCC WGS blood_normal CPT0029430002 CPT0029430002.WholeGenome.RP-1303.bam 68238309334 BAM aligned CPTAC3 d1ac49e7-e991-45a4-9c54-29efd43be065 f685b7185a9c765c12279c6785eddf46 { 'aliquot_tag': 'ALQ_fd454489', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00766.WGS.N.hg38 C3L-00766 CCRCC WGS blood_normal CPT0029430002 83ea1247-e8c1-4bfc-a980-ff6559c85880_gdc_realn.bam 98180727025 BAM harmonized CPTAC3 1803562e-4a8e-44e0-a4f7-dba1b397b9bd 161652ca2dc1c697e880fc0596246bf4 { 'aliquot_tag': 'ALQ_fd454489', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3569,14 +4028,17 @@ C3L-00766.WXS.T.hg38 C3L-00766 CCRCC WXS tumor CPT0025170009 00e60ad6-4363-47ae- C3L-00767.ADD_c60f079.miRNA-Seq.T C3L-00767 UCEC miRNA-Seq tumor CPT0026430006 180924_UNC31-K00269_0154_AHWTMLBBXX_CGTACG_S9_L001_R1_001.unaln.bam 214810997 BAM unaligned CPTAC3 1bd8a552-1204-4e63-9c90-6667da726b21 7bb11989f43ee9d491e7b9b992095df6 { 'aliquot_tag': 'ADD_c60f079', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested' } C3L-00767.ADD_c60f079.miRNA-Seq.T.hg38 C3L-00767 UCEC miRNA-Seq tumor CPT0026430006 0ebbce9f-8bc0-4f19-8b09-642abd559498_mirnaseq_gdc_realn.bam 244027324 BAM harmonized CPTAC3 447c423d-bcb4-4bf9-bf07-44fdb98d3564 45c0d8b4b428618ed7526ac455b8a29f { 'aliquot_tag': 'ADD_c60f079', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested' } C3L-00767.ADD_c60f079.RNA-Seq.chimeric.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026430006 cec2d27e-cffc-425c-bbc5-8fda77eaa9b7.rna_seq.chimeric.gdc_realn.bam 75486033 BAM chimeric harmonized CPTAC3 45154a1d-82d6-4285-b704-dd904f5cbbb2 e49329b8133f60d5b58802087b783428 { 'aliquot_tag': 'ADD_c60f079', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested' } -C3L-00767.ADD_c60f079.RNA-Seq.genomic.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026430006 cec2d27e-cffc-425c-bbc5-8fda77eaa9b7.rna_seq.genomic.gdc_realn.bam 9707034661 BAM genomic harmonized CPTAC3 84e43a54-18a2-4b57-827f-30b95e3a7383 63f21c1ff247f5237f82b2e1cdfa2519 { 'aliquot_tag': 'ADD_c60f079', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested' } -C3L-00767.ADD_c60f079.RNA-Seq.R1_L004.T C3L-00767 UCEC RNA-Seq tumor CPT0026430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CAGATC_S15_L004_R1_001.fastq.gz 4544135726 FASTQ R1_L004 unaligned CPTAC3 398b396a-17ba-4210-a645-a0f049b6e01e f9a76468eaf9fc4d899e61790c5f33a4 { 'aliquot_tag': 'ADD_c60f079', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested' } -C3L-00767.ADD_c60f079.RNA-Seq.R2_L004.T C3L-00767 UCEC RNA-Seq tumor CPT0026430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CAGATC_S15_L004_R2_001.fastq.gz 5025015263 FASTQ R2_L004 unaligned CPTAC3 b906f8b8-457b-4eed-bcc9-e9fb458b8bfa f0011b33a0727cc97b7c7ae3ee1524a3 { 'aliquot_tag': 'ADD_c60f079', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested' } +C3L-00767.ADD_c60f079.RNA-Seq.genomic.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026430006 cec2d27e-cffc-425c-bbc5-8fda77eaa9b7.rna_seq.genomic.gdc_realn.bam 9707034661 BAM genomic harmonized CPTAC3 e0579e3f-adcb-4f52-a6ba-89303f2f2bd2 63f21c1ff247f5237f82b2e1cdfa2519 { 'aliquot_tag': 'ADD_c60f079', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested' } +C3L-00767.ADD_c60f079.RNA-Seq.R1_L004.T C3L-00767 UCEC RNA-Seq tumor CPT0026430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CAGATC_S15_L004_R1_001.fastq.gz 4544135726 FASTQ R1_L004 unaligned CPTAC3 398b396a-17ba-4210-a645-a0f049b6e01e f9a76468eaf9fc4d899e61790c5f33a4 { 'aliquot_tag': 'ADD_c60f079', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested', 'read': 'R1', 'lane': 'L004' } +C3L-00767.ADD_c60f079.RNA-Seq.R2_L004.T C3L-00767 UCEC RNA-Seq tumor CPT0026430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CAGATC_S15_L004_R2_001.fastq.gz 5025015263 FASTQ R2_L004 unaligned CPTAC3 b906f8b8-457b-4eed-bcc9-e9fb458b8bfa f0011b33a0727cc97b7c7ae3ee1524a3 { 'aliquot_tag': 'ADD_c60f079', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested', 'read': 'R2', 'lane': 'L004' } C3L-00767.ADD_c60f079.RNA-Seq.transcriptome.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026430006 cec2d27e-cffc-425c-bbc5-8fda77eaa9b7.rna_seq.transcriptome.gdc_realn.bam 10921961536 BAM transcriptome harmonized CPTAC3 bb933eb5-68d0-4011-8056-d8b84c6e6adf d53e6b9dca6be1469fe2409ae1571fff { 'aliquot_tag': 'ADD_c60f079', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional RNA requested' } C3L-00767.MethArray.Green.T C3L-00767 UCEC Methylation Array tumor CPT0026430009 202184900148_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 a9416b12-9b20-49ee-b8d0-dc2e5344a34a 99c3e0302c956615da71f3e2519f45b6 { 'aliquot_tag': 'ALQ_9cdfede8', 'gdc_sample_type': 'Primary Tumor' } C3L-00767.MethArray.Red.T C3L-00767 UCEC Methylation Array tumor CPT0026430009 202184900148_R01C01_Red.idat 13676246 IDAT Red NA CPTAC3 a33dbc52-6727-4876-b5ca-6870e9429740 43c92e06568a994b0d030436bdc9e00c { 'aliquot_tag': 'ALQ_9cdfede8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00767.RNA-Seq.R1_.T C3L-00767 UCEC RNA-Seq tumor CPT0026450001 20210714_P1_B2_WB7988_plate1_S14_R1_001.fastq.gz 12540854338 FASTQ R1_ unaligned CPTAC3 601208b3-7ac6-4498-823a-6f210bbcf1c3 b8a1bf2642243b41d045a11ae26b2071 { 'aliquot_tag': 'ALQ_1d44907a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00767.RNA-Seq.R2_.T C3L-00767 UCEC RNA-Seq tumor CPT0026450001 20210714_P1_B2_WB7988_plate1_S14_R2_001.fastq.gz 13069973825 FASTQ R2_ unaligned CPTAC3 58677cc5-5e2b-44d3-a7c4-14089345548a 5208ad73ed8c68c377395cd80cf56c88 { 'aliquot_tag': 'ALQ_1d44907a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00767.RNA-Seq.chimeric.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026450001 b4aa381f-9895-4bdc-818b-6deec03782bf.rna_seq.chimeric.gdc_realn.bam 394827161 BAM chimeric harmonized CPTAC3 fbd770e0-ac4e-4587-8427-020071f1a0d4 6a2e0d83d921f548a13496c21a867b72 { 'aliquot_tag': 'ALQ_1d44907a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00767.RNA-Seq.genomic.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026450001 b4aa381f-9895-4bdc-818b-6deec03782bf.rna_seq.genomic.gdc_realn.bam 19015397301 BAM genomic harmonized CPTAC3 b80a98cc-1bea-4ef5-9d18-020ababd0aac cb8acdb6976afba819f847af5c5150bd { 'aliquot_tag': 'ALQ_1d44907a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00767.RNA-Seq.T C3L-00767 UCEC RNA-Seq tumor CPT0026450001 20210714_P1_B2_WB7988_plate1_S14_R1_001.fastq.gz 12540854338 FASTQ unaligned CPTAC3 601208b3-7ac6-4498-823a-6f210bbcf1c3 b8a1bf2642243b41d045a11ae26b2071 +C3L-00767.RNA-Seq.T C3L-00767 UCEC RNA-Seq tumor CPT0026450001 20210714_P1_B2_WB7988_plate1_S14_R2_001.fastq.gz 13069973825 FASTQ unaligned CPTAC3 58677cc5-5e2b-44d3-a7c4-14089345548a 5208ad73ed8c68c377395cd80cf56c88 +C3L-00767.RNA-Seq.transcriptome.T.hg38 C3L-00767 UCEC RNA-Seq tumor CPT0026450001 b4aa381f-9895-4bdc-818b-6deec03782bf.rna_seq.transcriptome.gdc_realn.bam 11354200616 BAM transcriptome harmonized CPTAC3 c3e3e645-8713-48c9-93da-656c9467ad0a 38921c401c1bebef2dfcab3d2faaa551 { 'aliquot_tag': 'ALQ_1d44907a', 'gdc_sample_type': 'Primary Tumor' } C3L-00767.WGS.N C3L-00767 UCEC WGS blood_normal CPT0026490002 CPT0026490002.WholeGenome.RP-1303.bam 62340321709 BAM aligned CPTAC3 ac0f0450-8a1b-4289-bddb-a9355d1930bf 56c8691ff162c5337f71d74475a540e6 { 'aliquot_tag': 'ALQ_41bd2cc1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00767.WGS.N.hg38 C3L-00767 UCEC WGS blood_normal CPT0026490002 7993ec03-5c3f-4f2a-920d-33dbf262d40a_gdc_realn.bam 89893607496 BAM harmonized CPTAC3 d859af69-ac8f-4a4a-a376-9a6af50c07f3 872ffd61ff2bb19f8bf9c3765d93b700 { 'aliquot_tag': 'ALQ_41bd2cc1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00767.WGS.T C3L-00767 UCEC WGS tumor CPT0026430009 CPT0026430009.WholeGenome.RP-1303.bam 61485896986 BAM aligned CPTAC3 4d067b52-b0b1-4b49-9d8e-e7af4777913b 54c0a47e8bcce16af3acb2ecb7f4d113 { 'aliquot_tag': 'ALQ_9cdfede8', 'gdc_sample_type': 'Primary Tumor' } @@ -3590,12 +4052,15 @@ C3L-00769.MethArray.Red.T C3L-00769 UCEC Methylation Array tumor CPT0026530009 2 C3L-00769.miRNA-Seq.T C3L-00769 UCEC miRNA-Seq tumor CPT0026530006 180924_UNC31-K00269_0154_AHWTMLBBXX_GAGTGG_S8_L001_R1_001.unaln.bam 216444782 BAM unaligned CPTAC3 e1acca7e-e5ed-4af2-a65b-992f575aee8c 29ab4d5d9db36a681b7343574927e4d1 { 'aliquot_tag': 'ALQ_c73c23dc', 'gdc_sample_type': 'Primary Tumor' } C3L-00769.miRNA-Seq.T.hg38 C3L-00769 UCEC miRNA-Seq tumor CPT0026530006 5bfa1a75-40ed-44b5-bf39-eb1ba3dc4ba7_mirnaseq_gdc_realn.bam 237465745 BAM harmonized CPTAC3 0940f627-2764-47c3-a4c1-d169ab9ebb40 5970490273e998e7d146e90237a69e83 { 'aliquot_tag': 'ALQ_c73c23dc', 'gdc_sample_type': 'Primary Tumor' } C3L-00769.RNA-Seq.chimeric.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026530006 a315cfa7-3adf-4451-ae61-258d3a82cfbf.rna_seq.chimeric.gdc_realn.bam 77376353 BAM chimeric harmonized CPTAC3 01dc5eae-43e9-4388-9339-b59ec85885a6 24d85e902c063233d12604b98f600d7c { 'aliquot_tag': 'ALQ_c73c23dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-00769.RNA-Seq.genomic.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026530006 a315cfa7-3adf-4451-ae61-258d3a82cfbf.rna_seq.genomic.gdc_realn.bam 9433071307 BAM genomic harmonized CPTAC3 399dcd24-83ee-47d7-bf8a-3512d35ceb87 4095614d60da97bc65a9bea6a0b149cf { 'aliquot_tag': 'ALQ_c73c23dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-00769.RNA-Seq.R1_L004.T C3L-00769 UCEC RNA-Seq tumor CPT0026530006 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L004_R1_001.fastq.gz 4643837806 FASTQ R1_L004 unaligned CPTAC3 b279cd43-c02c-42f0-8c35-aaf3a15d1d3d 322fd12b424c284c802fad37f8a6598f { 'aliquot_tag': 'ALQ_c73c23dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-00769.RNA-Seq.R1_.T C3L-00769 UCEC RNA-Seq tumor CPT0026550001 20210714_P1_F6_WB7988_plate1_S66_R1_001.fastq.gz 8184559425 FASTQ R1_ unaligned CPTAC3 7e487c86-29a5-49b1-b338-55e7cd72a05c 7bece81738a9255579effa6b1363e75d { 'aliquot_tag': 'ALQ_d61843df', 'gdc_sample_type': 'Primary Tumor' } -C3L-00769.RNA-Seq.R2_L004.T C3L-00769 UCEC RNA-Seq tumor CPT0026530006 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L004_R2_001.fastq.gz 5109670711 FASTQ R2_L004 unaligned CPTAC3 89545c45-58a9-44f7-a03e-f0c0cf2a901f 1e53b36b0310c85debee24514f152407 { 'aliquot_tag': 'ALQ_c73c23dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-00769.RNA-Seq.R2_.T C3L-00769 UCEC RNA-Seq tumor CPT0026550001 20210714_P1_F6_WB7988_plate1_S66_R2_001.fastq.gz 8474620961 FASTQ R2_ unaligned CPTAC3 9fec309f-a1cf-4f7c-a7ea-56ab202f59c8 d07372a00c2aaca4e6ac43dd9c40af06 { 'aliquot_tag': 'ALQ_d61843df', 'gdc_sample_type': 'Primary Tumor' } +C3L-00769.RNA-Seq.chimeric.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026550001 885565bd-ab8a-4270-8c9e-f34a028c4ffc.rna_seq.chimeric.gdc_realn.bam 323928308 BAM chimeric harmonized CPTAC3 2d9986ac-a556-479e-9bbb-7045bbcac19b c5a97a20a82881d0c9144ed658a24b56 { 'aliquot_tag': 'ALQ_d61843df', 'gdc_sample_type': 'Primary Tumor' } +C3L-00769.RNA-Seq.genomic.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026530006 a315cfa7-3adf-4451-ae61-258d3a82cfbf.rna_seq.genomic.gdc_realn.bam 9433071307 BAM genomic harmonized CPTAC3 6bfd49fd-0d01-438a-9ff7-16b4096e80cf 4095614d60da97bc65a9bea6a0b149cf { 'aliquot_tag': 'ALQ_c73c23dc', 'gdc_sample_type': 'Primary Tumor' } +C3L-00769.RNA-Seq.genomic.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026550001 885565bd-ab8a-4270-8c9e-f34a028c4ffc.rna_seq.genomic.gdc_realn.bam 12926231069 BAM genomic harmonized CPTAC3 dcce8499-d25c-4d11-8d69-016b63054533 303fafb132b57d99f567dd9d8486d0b9 { 'aliquot_tag': 'ALQ_d61843df', 'gdc_sample_type': 'Primary Tumor' } +C3L-00769.RNA-Seq.R1_L004.T C3L-00769 UCEC RNA-Seq tumor CPT0026530006 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L004_R1_001.fastq.gz 4643837806 FASTQ R1_L004 unaligned CPTAC3 b279cd43-c02c-42f0-8c35-aaf3a15d1d3d 322fd12b424c284c802fad37f8a6598f { 'aliquot_tag': 'ALQ_c73c23dc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00769.RNA-Seq.R2_L004.T C3L-00769 UCEC RNA-Seq tumor CPT0026530006 170912_UNC31-K00269_0081_AHL3YKBBXX_ACTTGA_S14_L004_R2_001.fastq.gz 5109670711 FASTQ R2_L004 unaligned CPTAC3 89545c45-58a9-44f7-a03e-f0c0cf2a901f 1e53b36b0310c85debee24514f152407 { 'aliquot_tag': 'ALQ_c73c23dc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00769.RNA-Seq.T C3L-00769 UCEC RNA-Seq tumor CPT0026550001 20210714_P1_F6_WB7988_plate1_S66_R1_001.fastq.gz 8184559425 FASTQ unaligned CPTAC3 7e487c86-29a5-49b1-b338-55e7cd72a05c 7bece81738a9255579effa6b1363e75d +C3L-00769.RNA-Seq.T C3L-00769 UCEC RNA-Seq tumor CPT0026550001 20210714_P1_F6_WB7988_plate1_S66_R2_001.fastq.gz 8474620961 FASTQ unaligned CPTAC3 9fec309f-a1cf-4f7c-a7ea-56ab202f59c8 d07372a00c2aaca4e6ac43dd9c40af06 C3L-00769.RNA-Seq.transcriptome.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026530006 a315cfa7-3adf-4451-ae61-258d3a82cfbf.rna_seq.transcriptome.gdc_realn.bam 12940117831 BAM transcriptome harmonized CPTAC3 bd49e87f-dd54-4fe4-a22a-ebc4552bc3d8 4e93eadd30747b8496fee3cd7b457ed9 { 'aliquot_tag': 'ALQ_c73c23dc', 'gdc_sample_type': 'Primary Tumor' } +C3L-00769.RNA-Seq.transcriptome.T.hg38 C3L-00769 UCEC RNA-Seq tumor CPT0026550001 885565bd-ab8a-4270-8c9e-f34a028c4ffc.rna_seq.transcriptome.gdc_realn.bam 6697533387 BAM transcriptome harmonized CPTAC3 c5f858c8-b710-4918-bb85-2f14bd6b7f3d 2fbadbb76a77708f4e2527812f9b8d06 { 'aliquot_tag': 'ALQ_d61843df', 'gdc_sample_type': 'Primary Tumor' } C3L-00769.WGS.N C3L-00769 UCEC WGS blood_normal CPT0026590002 CPT0026590002.WholeGenome.RP-1303.bam 68636298310 BAM aligned CPTAC3 39ac855d-fd71-48d7-a2ca-21fe1b5c8b20 41adcffc4ee0863e80e3245b2fd5f5bb { 'aliquot_tag': 'ALQ_8ae1ff64', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00769.WGS.N.hg38 C3L-00769 UCEC WGS blood_normal CPT0026590002 4f90dd58-4dc8-4338-95ae-ce993e9370e4_gdc_realn.bam 99025304511 BAM harmonized CPTAC3 3a884473-fe8a-45e8-ae2d-eaaeaae500da 38d41bb26ad359044a1ce6f964f18e00 { 'aliquot_tag': 'ALQ_8ae1ff64', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00769.WGS.T C3L-00769 UCEC WGS tumor CPT0026530009 CPT0026530009.WholeGenome.RP-1303.bam 71018112728 BAM aligned CPTAC3 35ad67d5-eb77-40a1-b79b-b2d29a582f22 977461a151497a80090dca22c3cc62a1 { 'aliquot_tag': 'ALQ_57833e4d', 'gdc_sample_type': 'Primary Tumor' } @@ -3609,12 +4074,15 @@ C3L-00770.MethArray.Red.T C3L-00770 UCEC Methylation Array tumor CPT0026650009 2 C3L-00770.miRNA-Seq.T C3L-00770 UCEC miRNA-Seq tumor CPT0026650006 180924_UNC31-K00269_0154_AHWTMLBBXX_GGTAGC_S7_L001_R1_001.unaln.bam 177436684 BAM unaligned CPTAC3 8c69637c-46f1-4ef6-ab98-1a0aa42d28d3 d28b5146685c5bb265271f2ad0f673f4 { 'aliquot_tag': 'ALQ_cee8a4d2', 'gdc_sample_type': 'Primary Tumor' } C3L-00770.miRNA-Seq.T.hg38 C3L-00770 UCEC miRNA-Seq tumor CPT0026650006 9b7b6856-9ba1-461c-b8b5-a9aa8815e9ed_mirnaseq_gdc_realn.bam 193518630 BAM harmonized CPTAC3 c13f62b3-51d5-4c6c-a2d0-1224f34ab987 ba3e985aa3b8391571f507d65534d156 { 'aliquot_tag': 'ALQ_cee8a4d2', 'gdc_sample_type': 'Primary Tumor' } C3L-00770.RNA-Seq.chimeric.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026650006 96bbaa9e-f354-4778-8b0f-b02bb169d728.rna_seq.chimeric.gdc_realn.bam 98350728 BAM chimeric harmonized CPTAC3 96c33386-a857-4bd5-ab24-f264d1c29f71 c15fed709c57de8721d0c0f1686be2bc { 'aliquot_tag': 'ALQ_cee8a4d2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00770.RNA-Seq.chimeric.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026670001 64be61be-941f-4bb5-a06a-d281c3d4883f.rna_seq.chimeric.gdc_realn.bam 259951023 BAM chimeric harmonized CPTAC3 9545c789-0ae7-45ab-b0da-d297207571d2 af63c89b3343ede1066f341c29a6e9e5 { 'aliquot_tag': 'ALQ_2a4c6211', 'gdc_sample_type': 'Primary Tumor' } C3L-00770.RNA-Seq.genomic.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026650006 96bbaa9e-f354-4778-8b0f-b02bb169d728.rna_seq.genomic.gdc_realn.bam 6726406648 BAM genomic harmonized CPTAC3 da2d5579-ad0a-477d-a7d3-ebbafb7aef53 ca85ee4091530a89ae0dfe341f1d63ba { 'aliquot_tag': 'ALQ_cee8a4d2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00770.RNA-Seq.R1_L003.T C3L-00770 UCEC RNA-Seq tumor CPT0026650006 170912_UNC31-K00269_0081_AHL3YKBBXX_GATCAG_S11_L003_R1_001.fastq.gz 3210855581 FASTQ R1_L003 unaligned CPTAC3 866a0af4-d611-4690-89f7-a6bd28807494 2b0d8c2841c710d214b480f4e783dc0d { 'aliquot_tag': 'ALQ_cee8a4d2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00770.RNA-Seq.R1_.T C3L-00770 UCEC RNA-Seq tumor CPT0026670001 20210714_P1_C2_WB7988_plate1_S26_R1_001.fastq.gz 8514648651 FASTQ R1_ unaligned CPTAC3 45945e5a-1afb-495d-8656-0b7775a335f8 768353d108bb130daa8269c1ca9135b2 { 'aliquot_tag': 'ALQ_2a4c6211', 'gdc_sample_type': 'Primary Tumor' } -C3L-00770.RNA-Seq.R2_L003.T C3L-00770 UCEC RNA-Seq tumor CPT0026650006 170912_UNC31-K00269_0081_AHL3YKBBXX_GATCAG_S11_L003_R2_001.fastq.gz 3533356604 FASTQ R2_L003 unaligned CPTAC3 f5bbe1ad-856b-4c71-bd70-e538c2b1898e 054d58bbb400b02266092663d9ce74e0 { 'aliquot_tag': 'ALQ_cee8a4d2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00770.RNA-Seq.R2_.T C3L-00770 UCEC RNA-Seq tumor CPT0026670001 20210714_P1_C2_WB7988_plate1_S26_R2_001.fastq.gz 8870217673 FASTQ R2_ unaligned CPTAC3 8531e973-c902-4900-98f4-bed7378c7f2d feed2cc7f725f8a5929f4e0a53f8a0eb { 'aliquot_tag': 'ALQ_2a4c6211', 'gdc_sample_type': 'Primary Tumor' } +C3L-00770.RNA-Seq.genomic.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026670001 64be61be-941f-4bb5-a06a-d281c3d4883f.rna_seq.genomic.gdc_realn.bam 13725926085 BAM genomic harmonized CPTAC3 0ab620f5-5d54-4f14-9714-23df0fa84f16 7e101cd17a553b508cdbd2661849f0ac { 'aliquot_tag': 'ALQ_2a4c6211', 'gdc_sample_type': 'Primary Tumor' } +C3L-00770.RNA-Seq.R1_L003.T C3L-00770 UCEC RNA-Seq tumor CPT0026650006 170912_UNC31-K00269_0081_AHL3YKBBXX_GATCAG_S11_L003_R1_001.fastq.gz 3210855581 FASTQ R1_L003 unaligned CPTAC3 866a0af4-d611-4690-89f7-a6bd28807494 2b0d8c2841c710d214b480f4e783dc0d { 'aliquot_tag': 'ALQ_cee8a4d2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00770.RNA-Seq.R2_L003.T C3L-00770 UCEC RNA-Seq tumor CPT0026650006 170912_UNC31-K00269_0081_AHL3YKBBXX_GATCAG_S11_L003_R2_001.fastq.gz 3533356604 FASTQ R2_L003 unaligned CPTAC3 f5bbe1ad-856b-4c71-bd70-e538c2b1898e 054d58bbb400b02266092663d9ce74e0 { 'aliquot_tag': 'ALQ_cee8a4d2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00770.RNA-Seq.T C3L-00770 UCEC RNA-Seq tumor CPT0026670001 20210714_P1_C2_WB7988_plate1_S26_R1_001.fastq.gz 8514648651 FASTQ unaligned CPTAC3 45945e5a-1afb-495d-8656-0b7775a335f8 768353d108bb130daa8269c1ca9135b2 +C3L-00770.RNA-Seq.T C3L-00770 UCEC RNA-Seq tumor CPT0026670001 20210714_P1_C2_WB7988_plate1_S26_R2_001.fastq.gz 8870217673 FASTQ unaligned CPTAC3 8531e973-c902-4900-98f4-bed7378c7f2d feed2cc7f725f8a5929f4e0a53f8a0eb C3L-00770.RNA-Seq.transcriptome.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026650006 96bbaa9e-f354-4778-8b0f-b02bb169d728.rna_seq.transcriptome.gdc_realn.bam 8717596652 BAM transcriptome harmonized CPTAC3 08706e07-c04d-4884-abf3-d49e065dbd38 980d30fd7c7b62205b1c08e74e0edcf0 { 'aliquot_tag': 'ALQ_cee8a4d2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00770.RNA-Seq.transcriptome.T.hg38 C3L-00770 UCEC RNA-Seq tumor CPT0026670001 64be61be-941f-4bb5-a06a-d281c3d4883f.rna_seq.transcriptome.gdc_realn.bam 8139116770 BAM transcriptome harmonized CPTAC3 5f29f19d-eafb-4031-936e-be11ecd972ba ae1400064405b24e36b960573e69ad4d { 'aliquot_tag': 'ALQ_2a4c6211', 'gdc_sample_type': 'Primary Tumor' } C3L-00770.WGS.N C3L-00770 UCEC WGS blood_normal CPT0026710002 CPT0026710002.WholeGenome.RP-1303.bam 65695085940 BAM aligned CPTAC3 d55d3120-8759-48e2-81e6-b86614d51a92 6d8853743b6ee3dbaec8d2764c6bfee7 { 'aliquot_tag': 'ALQ_f75915ae', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00770.WGS.N.hg38 C3L-00770 UCEC WGS blood_normal CPT0026710002 330d5168-11d4-4bd3-924c-00a48a2e77f6_gdc_realn.bam 95365597650 BAM harmonized CPTAC3 ee622934-1e17-44f8-8d8d-41011cc7e50e da43568284f052e6caa6411875e4fe80 { 'aliquot_tag': 'ALQ_f75915ae', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00770.WGS.T C3L-00770 UCEC WGS tumor CPT0026650009 CPT0026650009.WholeGenome.RP-1303.bam 63965991515 BAM aligned CPTAC3 abb63dbc-2305-4844-88bc-3cd1a40551c7 996d3d12d383f23c9380c13c67b47d11 { 'aliquot_tag': 'ALQ_5e57b943', 'gdc_sample_type': 'Primary Tumor' } @@ -3628,12 +4096,15 @@ C3L-00771.MethArray.Red.T C3L-00771 UCEC Methylation Array tumor CPT0026770009 2 C3L-00771.miRNA-Seq.T C3L-00771 UCEC miRNA-Seq tumor CPT0026770006 180924_UNC31-K00269_0154_AHWTMLBBXX_ACTGAT_S6_L001_R1_001.unaln.bam 432174685 BAM unaligned CPTAC3 76022649-a402-48a3-99e1-00fa16269af7 dbe3c86d0c8785a113b5495518f1f0be { 'aliquot_tag': 'ALQ_7f742417', 'gdc_sample_type': 'Primary Tumor' } C3L-00771.miRNA-Seq.T.hg38 C3L-00771 UCEC miRNA-Seq tumor CPT0026770006 4198cf25-ebbc-4c0d-85b8-0a80244da6d4_mirnaseq_gdc_realn.bam 475189502 BAM harmonized CPTAC3 ebf8fb51-88d0-4930-a4f1-115c4c183918 d89157175fc0c6a719dcc63b849fa128 { 'aliquot_tag': 'ALQ_7f742417', 'gdc_sample_type': 'Primary Tumor' } C3L-00771.RNA-Seq.chimeric.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026770006 7df5668f-1dd8-438f-bbf9-2c531ecd65b8.rna_seq.chimeric.gdc_realn.bam 88741331 BAM chimeric harmonized CPTAC3 d870b4dc-2fc9-4872-b20f-503b04afce34 d365c85faa7f7ae4e39cc74091b4138b { 'aliquot_tag': 'ALQ_7f742417', 'gdc_sample_type': 'Primary Tumor' } -C3L-00771.RNA-Seq.genomic.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026770006 7df5668f-1dd8-438f-bbf9-2c531ecd65b8.rna_seq.genomic.gdc_realn.bam 9944518528 BAM genomic harmonized CPTAC3 d38fcb79-4aa2-4b93-b3dd-5114cbca6198 64f8a73cee3908b479b7832be6cab379 { 'aliquot_tag': 'ALQ_7f742417', 'gdc_sample_type': 'Primary Tumor' } -C3L-00771.RNA-Seq.R1_L003.T C3L-00771 UCEC RNA-Seq tumor CPT0026770006 170912_UNC31-K00269_0081_AHL3YKBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4604348415 FASTQ R1_L003 unaligned CPTAC3 a6fab0ab-ce4b-44cb-bf38-b9db4caa2e70 965d78f080bfd9143a57c00b68165303 { 'aliquot_tag': 'ALQ_7f742417', 'gdc_sample_type': 'Primary Tumor' } -C3L-00771.RNA-Seq.R1_.T C3L-00771 UCEC RNA-Seq tumor CPT0026790001 20210714_P1_C6_WB7988_plate1_S30_R1_001.fastq.gz 5048975062 FASTQ R1_ unaligned CPTAC3 f3d56bee-b335-4134-9011-cde4ad2af5a4 bb1e7d3a70c09edc5c47934e384ac2a8 { 'aliquot_tag': 'ALQ_5e200fd5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00771.RNA-Seq.R2_L003.T C3L-00771 UCEC RNA-Seq tumor CPT0026770006 170912_UNC31-K00269_0081_AHL3YKBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 5028202029 FASTQ R2_L003 unaligned CPTAC3 8a6ab525-f78c-4814-89f3-4b487a4a847c 1d547bb9642d1b46c48ab12c8231ffeb { 'aliquot_tag': 'ALQ_7f742417', 'gdc_sample_type': 'Primary Tumor' } -C3L-00771.RNA-Seq.R2_.T C3L-00771 UCEC RNA-Seq tumor CPT0026790001 20210714_P1_C6_WB7988_plate1_S30_R2_001.fastq.gz 5265782827 FASTQ R2_ unaligned CPTAC3 7c4721c6-6937-45a9-8adc-48940035dfd7 c79856c213517e63623ae39f28241867 { 'aliquot_tag': 'ALQ_5e200fd5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00771.RNA-Seq.chimeric.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026790001 43d39f8d-3fc9-4e76-9502-75fbbcf1b859.rna_seq.chimeric.gdc_realn.bam 146132743 BAM chimeric harmonized CPTAC3 3b4cd5cd-6bb7-4627-a9bf-3db67505a309 80806bfe68607e30336059933ad5802f { 'aliquot_tag': 'ALQ_5e200fd5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00771.RNA-Seq.genomic.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026770006 7df5668f-1dd8-438f-bbf9-2c531ecd65b8.rna_seq.genomic.gdc_realn.bam 9944518528 BAM genomic harmonized CPTAC3 454ff995-5066-45ea-a081-4cf8d412d854 64f8a73cee3908b479b7832be6cab379 { 'aliquot_tag': 'ALQ_7f742417', 'gdc_sample_type': 'Primary Tumor' } +C3L-00771.RNA-Seq.genomic.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026790001 43d39f8d-3fc9-4e76-9502-75fbbcf1b859.rna_seq.genomic.gdc_realn.bam 7783018799 BAM genomic harmonized CPTAC3 d1a3f6d5-f277-44d3-b594-96d43d376f26 b84c8db45a0f62d70533cd1454f02dab { 'aliquot_tag': 'ALQ_5e200fd5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00771.RNA-Seq.R1_L003.T C3L-00771 UCEC RNA-Seq tumor CPT0026770006 170912_UNC31-K00269_0081_AHL3YKBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4604348415 FASTQ R1_L003 unaligned CPTAC3 a6fab0ab-ce4b-44cb-bf38-b9db4caa2e70 965d78f080bfd9143a57c00b68165303 { 'aliquot_tag': 'ALQ_7f742417', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00771.RNA-Seq.R2_L003.T C3L-00771 UCEC RNA-Seq tumor CPT0026770006 170912_UNC31-K00269_0081_AHL3YKBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 5028202029 FASTQ R2_L003 unaligned CPTAC3 8a6ab525-f78c-4814-89f3-4b487a4a847c 1d547bb9642d1b46c48ab12c8231ffeb { 'aliquot_tag': 'ALQ_7f742417', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00771.RNA-Seq.T C3L-00771 UCEC RNA-Seq tumor CPT0026790001 20210714_P1_C6_WB7988_plate1_S30_R1_001.fastq.gz 5048975062 FASTQ unaligned CPTAC3 f3d56bee-b335-4134-9011-cde4ad2af5a4 bb1e7d3a70c09edc5c47934e384ac2a8 +C3L-00771.RNA-Seq.T C3L-00771 UCEC RNA-Seq tumor CPT0026790001 20210714_P1_C6_WB7988_plate1_S30_R2_001.fastq.gz 5265782827 FASTQ unaligned CPTAC3 7c4721c6-6937-45a9-8adc-48940035dfd7 c79856c213517e63623ae39f28241867 C3L-00771.RNA-Seq.transcriptome.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026770006 7df5668f-1dd8-438f-bbf9-2c531ecd65b8.rna_seq.transcriptome.gdc_realn.bam 11630073946 BAM transcriptome harmonized CPTAC3 60cc01c3-f236-47a4-b372-edc914c7f544 0ee302e37a6036cfeed85a555a5bfaf6 { 'aliquot_tag': 'ALQ_7f742417', 'gdc_sample_type': 'Primary Tumor' } +C3L-00771.RNA-Seq.transcriptome.T.hg38 C3L-00771 UCEC RNA-Seq tumor CPT0026790001 43d39f8d-3fc9-4e76-9502-75fbbcf1b859.rna_seq.transcriptome.gdc_realn.bam 6306927230 BAM transcriptome harmonized CPTAC3 665262e9-7d16-4f16-8057-87494c351150 b7de8f8669f3f68a62260a8512d44267 { 'aliquot_tag': 'ALQ_5e200fd5', 'gdc_sample_type': 'Primary Tumor' } C3L-00771.WGS.N C3L-00771 UCEC WGS blood_normal CPT0026830002 CPT0026830002.WholeGenome.RP-1303.bam 61742891656 BAM aligned CPTAC3 a40b90b2-42f6-433b-8481-4d51c7b89547 de385d5717220e2f18debc4279732c5c { 'aliquot_tag': 'ALQ_7ccff41b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00771.WGS.N.hg38 C3L-00771 UCEC WGS blood_normal CPT0026830002 2bbab210-8789-4844-9de7-509231db0e6c_gdc_realn.bam 89972848085 BAM harmonized CPTAC3 4b0f79f5-6bce-4af8-a6eb-a52a896cfe48 cb5b9293fe08b024f785eecc991f7c70 { 'aliquot_tag': 'ALQ_7ccff41b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00771.WGS.T C3L-00771 UCEC WGS tumor CPT0026770009 CPT0026770009.WholeGenome.RP-1303.bam 63721913030 BAM aligned CPTAC3 f40669d0-1780-47a6-a351-c7cdf1b0c837 ebfe62fddc9cd2091512af90ff5d3b90 { 'aliquot_tag': 'ALQ_efcb3986', 'gdc_sample_type': 'Primary Tumor' } @@ -3648,8 +4119,8 @@ C3L-00780.miRNA-Seq.T C3L-00780 UCEC miRNA-Seq tumor CPT0070330007 181012_UNC32- C3L-00780.miRNA-Seq.T.hg38 C3L-00780 UCEC miRNA-Seq tumor CPT0070330007 dfbaf280-c587-45b8-ba12-a6ca72623a22_mirnaseq_gdc_realn.bam 188536458 BAM harmonized CPTAC3 5689272f-448d-41fe-b1a9-68177ffd4a66 42014c0764bf8f4453f9185c5396b118 { 'aliquot_tag': 'ALQ_4d52cb09', 'gdc_sample_type': 'Primary Tumor' } C3L-00780.RNA-Seq.chimeric.T.hg38 C3L-00780 UCEC RNA-Seq tumor CPT0070330007 7594e728-c296-4729-ad2c-89422d8bd9d5.rna_seq.chimeric.gdc_realn.bam 53256049 BAM chimeric harmonized CPTAC3 527afb00-8ccb-4bf9-bd2a-7c56d381f14b c7c37121f19da539b00937eacbb2fdc2 { 'aliquot_tag': 'ALQ_4d52cb09', 'gdc_sample_type': 'Primary Tumor' } C3L-00780.RNA-Seq.genomic.T.hg38 C3L-00780 UCEC RNA-Seq tumor CPT0070330007 7594e728-c296-4729-ad2c-89422d8bd9d5.rna_seq.genomic.gdc_realn.bam 8650767163 BAM genomic harmonized CPTAC3 7a7a291b-7a43-4e4e-a9cf-a9f3b6a5c39d 29386b5c59ddd28783321d23df6470be { 'aliquot_tag': 'ALQ_4d52cb09', 'gdc_sample_type': 'Primary Tumor' } -C3L-00780.RNA-Seq.R1_L006.T C3L-00780 UCEC RNA-Seq tumor CPT0070330007 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L006_R1_001.fastq.gz 4149226403 FASTQ R1_L006 unaligned CPTAC3 433f4fc5-843a-4a1b-b993-dd413244a03f b61cde914849aace27fc2f8722612662 { 'aliquot_tag': 'ALQ_4d52cb09', 'gdc_sample_type': 'Primary Tumor' } -C3L-00780.RNA-Seq.R2_L006.T C3L-00780 UCEC RNA-Seq tumor CPT0070330007 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L006_R2_001.fastq.gz 4444671341 FASTQ R2_L006 unaligned CPTAC3 0ad8238f-6db6-42c0-ae96-4d7a5f0e7e7b 278093ac8c4d98aa4e7641beed7d9b7d { 'aliquot_tag': 'ALQ_4d52cb09', 'gdc_sample_type': 'Primary Tumor' } +C3L-00780.RNA-Seq.R1_L006.T C3L-00780 UCEC RNA-Seq tumor CPT0070330007 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L006_R1_001.fastq.gz 4149226403 FASTQ R1_L006 unaligned CPTAC3 433f4fc5-843a-4a1b-b993-dd413244a03f b61cde914849aace27fc2f8722612662 { 'aliquot_tag': 'ALQ_4d52cb09', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00780.RNA-Seq.R2_L006.T C3L-00780 UCEC RNA-Seq tumor CPT0070330007 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L006_R2_001.fastq.gz 4444671341 FASTQ R2_L006 unaligned CPTAC3 0ad8238f-6db6-42c0-ae96-4d7a5f0e7e7b 278093ac8c4d98aa4e7641beed7d9b7d { 'aliquot_tag': 'ALQ_4d52cb09', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-00780.RNA-Seq.transcriptome.T.hg38 C3L-00780 UCEC RNA-Seq tumor CPT0070330007 7594e728-c296-4729-ad2c-89422d8bd9d5.rna_seq.transcriptome.gdc_realn.bam 10943566038 BAM transcriptome harmonized CPTAC3 8b4afef4-f65f-4553-b635-abccc540b042 ac2a5272c64565909eaabcf107dd88a9 { 'aliquot_tag': 'ALQ_4d52cb09', 'gdc_sample_type': 'Primary Tumor' } C3L-00780.WGS.N C3L-00780 UCEC WGS blood_normal CPT0071010002 CPT0071010002.WholeGenome.RP-1303.bam 74194572417 BAM aligned CPTAC3 21301d06-4d64-4205-9ad8-613998b0e5b7 7143defc8b08a9ff4fc4a21821bf19d7 { 'aliquot_tag': 'ALQ_671b15fc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00780.WGS.N.hg38 C3L-00780 UCEC WGS blood_normal CPT0071010002 5b8ab142-f4da-4643-8c68-db13cfd072b2_gdc_realn.bam 110619360206 BAM harmonized CPTAC3 30d98464-2799-4a96-ac54-29b14e1512cc 53e7c9991a6a583bf6448c8273ced620 { 'aliquot_tag': 'ALQ_671b15fc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3664,12 +4135,15 @@ C3L-00781.MethArray.Red.T C3L-00781 UCEC Methylation Array tumor CPT0070260009 2 C3L-00781.miRNA-Seq.T C3L-00781 UCEC miRNA-Seq tumor CPT0070260006 181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L001_R1_001.unaln.bam 212368435 BAM unaligned CPTAC3 9b016aeb-1877-4ca3-a4ef-13453361ce14 73410e463b6adff27b41f4db9a103c37 { 'aliquot_tag': 'ALQ_39e9a74a', 'gdc_sample_type': 'Primary Tumor' } C3L-00781.miRNA-Seq.T.hg38 C3L-00781 UCEC miRNA-Seq tumor CPT0070260006 16c70fb3-9961-4d76-b7de-ddcab4904e92_mirnaseq_gdc_realn.bam 240387591 BAM harmonized CPTAC3 5a2e27da-e780-473a-bfa3-a19d506257b5 bf5aaaa444700fdbc18e89152762acf5 { 'aliquot_tag': 'ALQ_39e9a74a', 'gdc_sample_type': 'Primary Tumor' } C3L-00781.RNA-Seq.chimeric.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070260006 6f749d26-5008-4c14-b761-2d5362224a9c.rna_seq.chimeric.gdc_realn.bam 28195554 BAM chimeric harmonized CPTAC3 745e57a9-b464-416e-acc8-e9b34f788f1b 5c3d64d2fcfc001182522644a4ebefd2 { 'aliquot_tag': 'ALQ_39e9a74a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00781.RNA-Seq.chimeric.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070560001 746a7795-5408-4d8a-b323-28b7eebbb08c.rna_seq.chimeric.gdc_realn.bam 282982914 BAM chimeric harmonized CPTAC3 ba8b9c3e-9bd2-454f-9d70-2b773a32b18e 9009d997387208df09562c96ccd37011 { 'aliquot_tag': 'ALQ_ba880251', 'gdc_sample_type': 'Primary Tumor' } C3L-00781.RNA-Seq.genomic.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070260006 6f749d26-5008-4c14-b761-2d5362224a9c.rna_seq.genomic.gdc_realn.bam 8243971457 BAM genomic harmonized CPTAC3 1d2a5ae7-0f95-45a7-b532-56db7f5ee886 cdb5d156ca9cc5389abc44c585b2215b { 'aliquot_tag': 'ALQ_39e9a74a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00781.RNA-Seq.R1_L003.T C3L-00781 UCEC RNA-Seq tumor CPT0070260006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGTACG_S9_L003_R1_001.fastq.gz 3804671211 FASTQ R1_L003 unaligned CPTAC3 0de24a9c-ebaa-45df-8405-9c753dce28b2 471bfdb06e9b5b3f5c9cf3c166134ce3 { 'aliquot_tag': 'ALQ_39e9a74a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00781.RNA-Seq.R1_.T C3L-00781 UCEC RNA-Seq tumor CPT0070560001 20210723_P2_G6_WB7988-plate2_S78_R1_001.fastq.gz 7512681971 FASTQ R1_ unaligned CPTAC3 f2fd1066-0297-4db5-ac1d-cfb1f112b621 1dec72c0ba58db0fa222dcdc96728fac { 'aliquot_tag': 'ALQ_ba880251', 'gdc_sample_type': 'Primary Tumor' } -C3L-00781.RNA-Seq.R2_L003.T C3L-00781 UCEC RNA-Seq tumor CPT0070260006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGTACG_S9_L003_R2_001.fastq.gz 4098934685 FASTQ R2_L003 unaligned CPTAC3 8fe73704-391c-40df-b4ed-7ddab091670b db856df64751866496d961064ac5bd6b { 'aliquot_tag': 'ALQ_39e9a74a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00781.RNA-Seq.R2_.T C3L-00781 UCEC RNA-Seq tumor CPT0070560001 20210723_P2_G6_WB7988-plate2_S78_R2_001.fastq.gz 7669099669 FASTQ R2_ unaligned CPTAC3 f85377c2-8c07-46f7-aa32-f185e85b2027 1f606dea998b03b79b4a97c4742c18c9 { 'aliquot_tag': 'ALQ_ba880251', 'gdc_sample_type': 'Primary Tumor' } +C3L-00781.RNA-Seq.genomic.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070560001 746a7795-5408-4d8a-b323-28b7eebbb08c.rna_seq.genomic.gdc_realn.bam 12648938511 BAM genomic harmonized CPTAC3 9f27f7a8-f073-43d3-b51d-8fde9a6bc352 39470d2afcc1c629936c427f6ec67e98 { 'aliquot_tag': 'ALQ_ba880251', 'gdc_sample_type': 'Primary Tumor' } +C3L-00781.RNA-Seq.R1_L003.T C3L-00781 UCEC RNA-Seq tumor CPT0070260006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGTACG_S9_L003_R1_001.fastq.gz 3804671211 FASTQ R1_L003 unaligned CPTAC3 0de24a9c-ebaa-45df-8405-9c753dce28b2 471bfdb06e9b5b3f5c9cf3c166134ce3 { 'aliquot_tag': 'ALQ_39e9a74a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00781.RNA-Seq.R2_L003.T C3L-00781 UCEC RNA-Seq tumor CPT0070260006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGTACG_S9_L003_R2_001.fastq.gz 4098934685 FASTQ R2_L003 unaligned CPTAC3 8fe73704-391c-40df-b4ed-7ddab091670b db856df64751866496d961064ac5bd6b { 'aliquot_tag': 'ALQ_39e9a74a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00781.RNA-Seq.T C3L-00781 UCEC RNA-Seq tumor CPT0070560001 20210723_P2_G6_WB7988-plate2_S78_R1_001.fastq.gz 7512681971 FASTQ unaligned CPTAC3 f2fd1066-0297-4db5-ac1d-cfb1f112b621 1dec72c0ba58db0fa222dcdc96728fac +C3L-00781.RNA-Seq.T C3L-00781 UCEC RNA-Seq tumor CPT0070560001 20210723_P2_G6_WB7988-plate2_S78_R2_001.fastq.gz 7669099669 FASTQ unaligned CPTAC3 f85377c2-8c07-46f7-aa32-f185e85b2027 1f606dea998b03b79b4a97c4742c18c9 C3L-00781.RNA-Seq.transcriptome.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070260006 6f749d26-5008-4c14-b761-2d5362224a9c.rna_seq.transcriptome.gdc_realn.bam 9858641230 BAM transcriptome harmonized CPTAC3 4502652f-9bcb-451f-a175-c6006ca2967e 3effbe59924585f0272a70f99237a8e7 { 'aliquot_tag': 'ALQ_39e9a74a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00781.RNA-Seq.transcriptome.T.hg38 C3L-00781 UCEC RNA-Seq tumor CPT0070560001 746a7795-5408-4d8a-b323-28b7eebbb08c.rna_seq.transcriptome.gdc_realn.bam 8486219451 BAM transcriptome harmonized CPTAC3 bb4f39ca-6a9b-487a-8450-814abb7b8d66 ac5aab64d25fd7ae36b6d0fb502cfcc1 { 'aliquot_tag': 'ALQ_ba880251', 'gdc_sample_type': 'Primary Tumor' } C3L-00781.WGS.N C3L-00781 UCEC WGS blood_normal CPT0071030002 CPT0071030002.WholeGenome.RP-1303.bam 76522999929 BAM aligned CPTAC3 327fb993-6554-45a4-b193-65d43fb3c42b d8d4ce4472f11aedcf72cbe65bda3e09 { 'aliquot_tag': 'ALQ_1ddb469c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00781.WGS.N.hg38 C3L-00781 UCEC WGS blood_normal CPT0071030002 f66e9c98-6bf9-401d-908e-6647373ab6ec_gdc_realn.bam 114863684048 BAM harmonized CPTAC3 a0b19c7e-733f-460c-969d-2e6954549afb 138fea9a86f7a09a7d0818998c45ef0e { 'aliquot_tag': 'ALQ_1ddb469c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00781.WGS.T C3L-00781 UCEC WGS tumor CPT0070260009 CPT0070260009.WholeGenome.RP-1303.bam 61713544130 BAM aligned CPTAC3 cfbec75e-6ba8-4141-8613-097815a13b49 e08bcaf607f5c15c4f2e535c068c05e0 { 'aliquot_tag': 'ALQ_a956badb', 'gdc_sample_type': 'Primary Tumor' } @@ -3682,11 +4156,11 @@ C3L-00789.MethArray.Green.T C3L-00789 CCRCC Methylation Array tumor CPT001603001 C3L-00789.MethArray.Red.T C3L-00789 CCRCC Methylation Array tumor CPT0016030017 202184900127_R08C01_Red.idat 13676248 IDAT Red NA CPTAC3 57aeddb4-886d-4b50-a400-6398e0fa5852 ddfed4fb7bf9dc0cdd154f49d24f3367 { 'aliquot_tag': 'ALQ_7762b45b', 'gdc_sample_type': 'Primary Tumor' } C3L-00789.miRNA-Seq.T C3L-00789 CCRCC miRNA-Seq tumor CPT0016030014 180924_UNC31-K00269_0154_AHWTMLBBXX_TCGAAG_S25_L002_R1_001.unaln.bam 261982729 BAM unaligned CPTAC3 d8ba475d-0704-4194-b079-f8f4ea57bfaf 1378c6ac9fd93aaa7aa0665702f7ac08 { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor' } C3L-00789.miRNA-Seq.T.hg38 C3L-00789 CCRCC miRNA-Seq tumor CPT0016030014 932e1b51-4093-4066-a97b-b1da465a8ded_mirnaseq_gdc_realn.bam 291421997 BAM harmonized CPTAC3 6583572e-16d7-4612-bfff-06ee418fb4ac e530c197808b5180ee8a011d4412c9c1 { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00789.RNA-Seq.chimeric.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 c915a1d7-7ef2-45dc-a5b0-76cd1d7a0f0a.rna_seq.chimeric.gdc_realn.bam 94092182 BAM chimeric harmonized CPTAC3 f2b2f28f-c47c-4871-94c4-5e3b615c4d30 c6ee1ff50fb610fcfae20da88eff00fa { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00789.RNA-Seq.genomic.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 c915a1d7-7ef2-45dc-a5b0-76cd1d7a0f0a.rna_seq.genomic.gdc_realn.bam 9470727762 BAM genomic harmonized CPTAC3 d8776b8f-2984-42a1-9c96-039b3edc442c e241d4fd414d0744c745f78b7c62ab47 { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00789.RNA-Seq.R1_L003.T C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 170823_UNC31-K00269_0076_BHLCTFBBXX_GATCAG_S11_L003_R1_001.fastq.gz 4725773409 FASTQ R1_L003 unaligned CPTAC3 21363c94-8e2c-4e7a-bcce-f2de1c193ca0 5cb34ccb175a341b22a5d9f6b484ce9b { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00789.RNA-Seq.R2_L003.T C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 170823_UNC31-K00269_0076_BHLCTFBBXX_GATCAG_S11_L003_R2_001.fastq.gz 5105086963 FASTQ R2_L003 unaligned CPTAC3 f0ad7dbf-4e74-4255-834d-45fe2ad1cf3d 409251892f28fc20ea45f31fdd6c5cb2 { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00789.RNA-Seq.transcriptome.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 c915a1d7-7ef2-45dc-a5b0-76cd1d7a0f0a.rna_seq.transcriptome.gdc_realn.bam 11188275855 BAM transcriptome harmonized CPTAC3 206eda50-fc4b-4757-93f8-9ffebe1c46f0 f49e0fba33b11ecba2a2ab1bd137ce44 { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00789.RNA-Seq.chimeric.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 05c28ba3-07f7-4fd5-b3a5-8dfb44f27b84.rna_seq.chimeric.gdc_realn.bam 94063903 BAM chimeric harmonized CPTAC3 31a31e53-1649-4068-8af3-b2839d2c844e 29c15e779257ef7351df05cd67e7dc2e { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00789.RNA-Seq.genomic.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 05c28ba3-07f7-4fd5-b3a5-8dfb44f27b84.rna_seq.genomic.gdc_realn.bam 9471814083 BAM genomic harmonized CPTAC3 238eebab-bc5e-4b3d-a93a-37080a14684e addbf2238029522ea7a2cc1d1ce2ca13 { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00789.RNA-Seq.R1_L003.T C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 170823_UNC31-K00269_0076_BHLCTFBBXX_GATCAG_S11_L003_R1_001.fastq.gz 4725773409 FASTQ R1_L003 unaligned CPTAC3 21363c94-8e2c-4e7a-bcce-f2de1c193ca0 5cb34ccb175a341b22a5d9f6b484ce9b { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00789.RNA-Seq.R2_L003.T C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 170823_UNC31-K00269_0076_BHLCTFBBXX_GATCAG_S11_L003_R2_001.fastq.gz 5105086963 FASTQ R2_L003 unaligned CPTAC3 f0ad7dbf-4e74-4255-834d-45fe2ad1cf3d 409251892f28fc20ea45f31fdd6c5cb2 { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00789.RNA-Seq.transcriptome.T.hg38 C3L-00789 CCRCC RNA-Seq tumor CPT0016030014 05c28ba3-07f7-4fd5-b3a5-8dfb44f27b84.rna_seq.transcriptome.gdc_realn.bam 12738859942 BAM transcriptome harmonized CPTAC3 34e36b40-1780-4d7e-bd4d-74dc5db21255 a2761dbaedd6dd62a7fe55f72d8a2812 { 'aliquot_tag': 'ALQ_ee6be5e1', 'gdc_sample_type': 'Primary Tumor' } C3L-00789.WGS.N C3L-00789 CCRCC WGS blood_normal CPT0018330002 CPT0018330002.WholeGenome.RP-1303.bam 82716651874 BAM aligned CPTAC3 bb42ca23-3c85-4856-81c4-4d65860bd11c 119bfe0b4dc03f4e24540e42514c00bb { 'aliquot_tag': 'ALQ_c8b87866', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00789.WGS.N.hg38 C3L-00789 CCRCC WGS blood_normal CPT0018330002 ff246444-2891-4a80-938b-cf5062af1a48_gdc_realn.bam 129442613107 BAM harmonized CPTAC3 34b9834d-1f0d-40e6-ab43-1950a3b78fdb 597cedeec95e5180e3a6c710e6a10a0b { 'aliquot_tag': 'ALQ_c8b87866', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00789.WGS.T C3L-00789 CCRCC WGS tumor CPT0016030017 CPT0016030017.WholeGenome.RP-1303.bam 82557681660 BAM aligned CPTAC3 fe731431-7a47-4b96-aca4-2310c2c8171c b95190e82959c488f4968ab8b105bbe6 { 'aliquot_tag': 'ALQ_7762b45b', 'gdc_sample_type': 'Primary Tumor' } @@ -3701,8 +4175,8 @@ C3L-00790.miRNA-Seq.T C3L-00790 CCRCC miRNA-Seq tumor CPT0065690006 181108_UNC31 C3L-00790.miRNA-Seq.T.hg38 C3L-00790 CCRCC miRNA-Seq tumor CPT0065690006 fd1efbfd-2a8f-44c5-bcc9-f18374d178ef_mirnaseq_gdc_realn.bam 272473846 BAM harmonized CPTAC3 a1d075d8-11df-47bd-bb9a-1a2fd16d4e3e f55ddc578d5accf9dbea3074deffa175 { 'aliquot_tag': 'ALQ_beba5db4', 'gdc_sample_type': 'Primary Tumor' } C3L-00790.RNA-Seq.chimeric.T.hg38 C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 e05cbdf9-cef5-40d4-83bd-339964205476.rna_seq.chimeric.gdc_realn.bam 35063478 BAM chimeric harmonized CPTAC3 cde4ca04-8951-4837-90fc-0d795dd25a2e 95a6f63b218df2e1c8abf8a4c7a462d5 { 'aliquot_tag': 'ALQ_beba5db4', 'gdc_sample_type': 'Primary Tumor' } C3L-00790.RNA-Seq.genomic.T.hg38 C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 e05cbdf9-cef5-40d4-83bd-339964205476.rna_seq.genomic.gdc_realn.bam 8104226435 BAM genomic harmonized CPTAC3 ab59bdd1-aa9c-4950-a966-7818068a6ad1 b8772cb405a5c650686332227aabec40 { 'aliquot_tag': 'ALQ_beba5db4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00790.RNA-Seq.R1_L002.T C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L002_R1_001.fastq.gz 3979549623 FASTQ R1_L002 unaligned CPTAC3 972efe5e-789a-4322-abc9-54d270c2529d 312664197ad286db9cc29e042e61a6e1 { 'aliquot_tag': 'ALQ_beba5db4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00790.RNA-Seq.R2_L002.T C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L002_R2_001.fastq.gz 4230683498 FASTQ R2_L002 unaligned CPTAC3 5fe9ea2b-9e26-4437-8b2c-594d7c523abe 671d625060a8c06a362539b7a66438bf { 'aliquot_tag': 'ALQ_beba5db4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00790.RNA-Seq.R1_L002.T C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L002_R1_001.fastq.gz 3979549623 FASTQ R1_L002 unaligned CPTAC3 972efe5e-789a-4322-abc9-54d270c2529d 312664197ad286db9cc29e042e61a6e1 { 'aliquot_tag': 'ALQ_beba5db4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00790.RNA-Seq.R2_L002.T C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L002_R2_001.fastq.gz 4230683498 FASTQ R2_L002 unaligned CPTAC3 5fe9ea2b-9e26-4437-8b2c-594d7c523abe 671d625060a8c06a362539b7a66438bf { 'aliquot_tag': 'ALQ_beba5db4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-00790.RNA-Seq.transcriptome.T.hg38 C3L-00790 CCRCC RNA-Seq tumor CPT0065690006 e05cbdf9-cef5-40d4-83bd-339964205476.rna_seq.transcriptome.gdc_realn.bam 9729050387 BAM transcriptome harmonized CPTAC3 f760d5ae-2f9c-480e-b439-797461a974da f75313e188faa4f3ec2467e235fa6cea { 'aliquot_tag': 'ALQ_beba5db4', 'gdc_sample_type': 'Primary Tumor' } C3L-00790.WGS.N C3L-00790 CCRCC WGS blood_normal CPT0067650002 CPT0067650002.WholeGenome.RP-1303.bam 78244877560 BAM aligned CPTAC3 71ea60b9-caff-4226-a26b-0e287c2c8a50 1eed2a9378eb7a8d18dfab8d84eaa27e { 'aliquot_tag': 'ALQ_ebb86585', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00790.WGS.N.hg38 C3L-00790 CCRCC WGS blood_normal CPT0067650002 cbeac8df-cedf-4e5a-9bbc-c16131c07ff6_gdc_realn.bam 123197442724 BAM harmonized CPTAC3 b29fae35-80ac-4cfb-8f2f-28396e2b3665 865bcd43601cb13276a4aced9e6caf0a { 'aliquot_tag': 'ALQ_ebb86585', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3717,9 +4191,9 @@ C3L-00791.MethArray.Red.T C3L-00791 CCRCC Methylation Array tumor CPT0026410009 C3L-00791.miRNA-Seq.T C3L-00791 CCRCC miRNA-Seq tumor CPT0026410006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTTTCG_S10_L001_R1_001.unaln.bam 228587952 BAM unaligned CPTAC3 b3285815-ef1b-41da-b812-8a377a84af64 6524d1700565fbcd33ff8724a5ea5836 { 'aliquot_tag': 'ALQ_76a0a319', 'gdc_sample_type': 'Primary Tumor' } C3L-00791.miRNA-Seq.T.hg38 C3L-00791 CCRCC miRNA-Seq tumor CPT0026410006 d27767bf-3f96-4dfb-a538-e7b72eb5aaa8_mirnaseq_gdc_realn.bam 253208220 BAM harmonized CPTAC3 3f28babb-e7ae-4508-ac9d-3bdc373db1e7 e8965c924f368d703a67d2f0e0387c54 { 'aliquot_tag': 'ALQ_76a0a319', 'gdc_sample_type': 'Primary Tumor' } C3L-00791.RNA-Seq.chimeric.T.hg38 C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 187a99f2-9848-4c7b-baa0-624bc1987e77.rna_seq.chimeric.gdc_realn.bam 77148667 BAM chimeric harmonized CPTAC3 f1e4d839-c438-4246-a512-dc26769f4d55 4e0cbc81e812e2fbffb6066aaecda4ea { 'aliquot_tag': 'ALQ_76a0a319', 'gdc_sample_type': 'Primary Tumor' } -C3L-00791.RNA-Seq.genomic.T.hg38 C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 187a99f2-9848-4c7b-baa0-624bc1987e77.rna_seq.genomic.gdc_realn.bam 8935972151 BAM genomic harmonized CPTAC3 ca5a1746-2d66-4f12-b0a0-f06e978da2b0 f52edd36a4001431d78b7b4f30cbca54 { 'aliquot_tag': 'ALQ_76a0a319', 'gdc_sample_type': 'Primary Tumor' } -C3L-00791.RNA-Seq.R1_L003.T C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L003_R1_001.fastq.gz 4300418853 FASTQ R1_L003 unaligned CPTAC3 6ddce4ca-3b32-4573-b613-e588b9b34b87 fa39c02805b59066fb2e13c89b3d65c0 { 'aliquot_tag': 'ALQ_76a0a319', 'gdc_sample_type': 'Primary Tumor' } -C3L-00791.RNA-Seq.R2_L003.T C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L003_R2_001.fastq.gz 4714136255 FASTQ R2_L003 unaligned CPTAC3 846dd412-1ec5-420d-8961-dcdc94f110ba 9f626d4e474d5bf403a93be091751db3 { 'aliquot_tag': 'ALQ_76a0a319', 'gdc_sample_type': 'Primary Tumor' } +C3L-00791.RNA-Seq.genomic.T.hg38 C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 187a99f2-9848-4c7b-baa0-624bc1987e77.rna_seq.genomic.gdc_realn.bam 8935972151 BAM genomic harmonized CPTAC3 07edb122-6acd-4436-a6aa-eb3a587538f6 f52edd36a4001431d78b7b4f30cbca54 { 'aliquot_tag': 'ALQ_76a0a319', 'gdc_sample_type': 'Primary Tumor' } +C3L-00791.RNA-Seq.R1_L003.T C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L003_R1_001.fastq.gz 4300418853 FASTQ R1_L003 unaligned CPTAC3 6ddce4ca-3b32-4573-b613-e588b9b34b87 fa39c02805b59066fb2e13c89b3d65c0 { 'aliquot_tag': 'ALQ_76a0a319', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00791.RNA-Seq.R2_L003.T C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L003_R2_001.fastq.gz 4714136255 FASTQ R2_L003 unaligned CPTAC3 846dd412-1ec5-420d-8961-dcdc94f110ba 9f626d4e474d5bf403a93be091751db3 { 'aliquot_tag': 'ALQ_76a0a319', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-00791.RNA-Seq.transcriptome.T.hg38 C3L-00791 CCRCC RNA-Seq tumor CPT0026410006 187a99f2-9848-4c7b-baa0-624bc1987e77.rna_seq.transcriptome.gdc_realn.bam 12896173617 BAM transcriptome harmonized CPTAC3 72f81126-be40-491d-9896-cfb45ea4b16d c854cf906e0faa2c67572d856059646a { 'aliquot_tag': 'ALQ_76a0a319', 'gdc_sample_type': 'Primary Tumor' } C3L-00791.WGS.N C3L-00791 CCRCC WGS blood_normal CPT0029500002 CPT0029500002.WholeGenome.RP-1303.bam 70104973680 BAM aligned CPTAC3 7af0d581-f94f-4b0e-b1bf-78d0eff14506 8c588a46837bd6eef9f6ab8382dba3f1 { 'aliquot_tag': 'ALQ_71b9edfc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00791.WGS.N.hg38 C3L-00791 CCRCC WGS blood_normal CPT0029500002 03f0c034-cfab-4864-bfcf-fcdeabec1493_gdc_realn.bam 101621896998 BAM harmonized CPTAC3 4b23c136-5d2a-4cd0-8df6-a89b4f0fd28d 5187ecbde68c37031028b23b75c21c35 { 'aliquot_tag': 'ALQ_71b9edfc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3734,9 +4208,9 @@ C3L-00792.MethArray.Red.T C3L-00792 CCRCC Methylation Array tumor CPT0015730006 C3L-00792.miRNA-Seq.T C3L-00792 CCRCC miRNA-Seq tumor CPT0015730009 180924_UNC31-K00269_0154_AHWTMLBBXX_CTATAC_S33_L002_R1_001.unaln.bam 286415302 BAM unaligned CPTAC3 534db37f-36d2-473f-9e3b-a8a24f80ed3c 7d82320f857dcde49db7fdea492b785b { 'aliquot_tag': 'ALQ_a52c8238', 'gdc_sample_type': 'Primary Tumor' } C3L-00792.miRNA-Seq.T.hg38 C3L-00792 CCRCC miRNA-Seq tumor CPT0015730009 91926337-d909-4f0a-8631-204cb3371bb7_mirnaseq_gdc_realn.bam 313583836 BAM harmonized CPTAC3 93be8f91-ad86-492c-8e2f-b1d64e950062 00defc2e05377f1f830f63122b07d440 { 'aliquot_tag': 'ALQ_a52c8238', 'gdc_sample_type': 'Primary Tumor' } C3L-00792.RNA-Seq.chimeric.T.hg38 C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 cd88c124-11aa-4c65-b7db-43d4a269decc.rna_seq.chimeric.gdc_realn.bam 91996674 BAM chimeric harmonized CPTAC3 6850ecc8-6a66-4df8-8d92-4b371644a019 32b32470065c9c8abd2be32339ac9edd { 'aliquot_tag': 'ALQ_a52c8238', 'gdc_sample_type': 'Primary Tumor' } -C3L-00792.RNA-Seq.genomic.T.hg38 C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 cd88c124-11aa-4c65-b7db-43d4a269decc.rna_seq.genomic.gdc_realn.bam 9587669259 BAM genomic harmonized CPTAC3 a5d6aa08-f87a-4d24-856f-d428f31c201b 04650b1f3ab6f5e0f795842c3b476d0b { 'aliquot_tag': 'ALQ_a52c8238', 'gdc_sample_type': 'Primary Tumor' } -C3L-00792.RNA-Seq.R1_L002.T C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTTCC_S8_L002_R1_001.fastq.gz 4724301911 FASTQ R1_L002 unaligned CPTAC3 418b4a44-7b5c-4d1a-b591-58e9bc0b2057 45529a36ef1468a1be8192f61ef0da54 { 'aliquot_tag': 'ALQ_a52c8238', 'gdc_sample_type': 'Primary Tumor' } -C3L-00792.RNA-Seq.R2_L002.T C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTTCC_S8_L002_R2_001.fastq.gz 5148534146 FASTQ R2_L002 unaligned CPTAC3 d48b1dd6-ab67-46ea-b1c7-0620df168c0c 543955e15dfe9624f89d06c40f365988 { 'aliquot_tag': 'ALQ_a52c8238', 'gdc_sample_type': 'Primary Tumor' } +C3L-00792.RNA-Seq.genomic.T.hg38 C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 cd88c124-11aa-4c65-b7db-43d4a269decc.rna_seq.genomic.gdc_realn.bam 9587669259 BAM genomic harmonized CPTAC3 701595ac-dbbb-4bc9-a824-d7db1e11b6f5 04650b1f3ab6f5e0f795842c3b476d0b { 'aliquot_tag': 'ALQ_a52c8238', 'gdc_sample_type': 'Primary Tumor' } +C3L-00792.RNA-Seq.R1_L002.T C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTTCC_S8_L002_R1_001.fastq.gz 4724301911 FASTQ R1_L002 unaligned CPTAC3 418b4a44-7b5c-4d1a-b591-58e9bc0b2057 45529a36ef1468a1be8192f61ef0da54 { 'aliquot_tag': 'ALQ_a52c8238', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00792.RNA-Seq.R2_L002.T C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTTCC_S8_L002_R2_001.fastq.gz 5148534146 FASTQ R2_L002 unaligned CPTAC3 d48b1dd6-ab67-46ea-b1c7-0620df168c0c 543955e15dfe9624f89d06c40f365988 { 'aliquot_tag': 'ALQ_a52c8238', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-00792.RNA-Seq.transcriptome.T.hg38 C3L-00792 CCRCC RNA-Seq tumor CPT0015730009 cd88c124-11aa-4c65-b7db-43d4a269decc.rna_seq.transcriptome.gdc_realn.bam 12933075148 BAM transcriptome harmonized CPTAC3 0f544acc-e1e3-43d4-b3d5-740b77df3237 e909bf5c99e578a22b306442e57c876e { 'aliquot_tag': 'ALQ_a52c8238', 'gdc_sample_type': 'Primary Tumor' } C3L-00792.WGS.N C3L-00792 CCRCC WGS blood_normal CPT0018270002 CPT0018270002.WholeGenome.RP-1303.bam 69328786507 BAM aligned CPTAC3 804253ff-772b-4bff-827f-6e3e71c65778 b9d17ae042e3b0c716c2401517dd6ae2 { 'aliquot_tag': 'ALQ_f6640d03', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00792.WGS.N.hg38 C3L-00792 CCRCC WGS blood_normal CPT0018270002 401e7be3-c452-497d-8b39-8e935cbd9717_gdc_realn.bam 102365948134 BAM harmonized CPTAC3 04c2befc-0ce9-49f9-8502-375f912c7e42 b79c47dd7e0d993281c597d9fbb28e28 { 'aliquot_tag': 'ALQ_f6640d03', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3752,16 +4226,16 @@ C3L-00795.miRNA-Seq.A C3L-00795 CCRCC miRNA-Seq tissue_normal CPT0390410005 2101 C3L-00795.miRNA-Seq.A.hg38 C3L-00795 CCRCC miRNA-Seq tissue_normal CPT0390410005 2314f6b4-b677-4aec-b0fb-1db76a89ffed_mirnaseq_gdc_realn.bam 238913478 BAM harmonized CPTAC3 f0e70095-58b1-4a77-b047-8b14bfccf657 f037eb64118ba083f96442a930ae1edb { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00795.miRNA-Seq.T C3L-00795 CCRCC miRNA-Seq tumor CPT0390400009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TATAAT_S34_L002_R1_001.unaln.bam 291501428 BAM unaligned CPTAC3 e13aa51d-bb66-433f-b04c-0906333bc1a7 6accaaa449154a2247c681d08a001663 { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor' } C3L-00795.miRNA-Seq.T.hg38 C3L-00795 CCRCC miRNA-Seq tumor CPT0390400009 62c7350c-4c81-4740-8a8f-1f87aa165372_mirnaseq_gdc_realn.bam 307543489 BAM harmonized CPTAC3 a02620b4-4aa9-400e-8bcf-e92291c583a8 23bb0f0fe9215dea6042ed5cc8572df4 { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor' } -C3L-00795.RNA-Seq.chimeric.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 e250a2f3-1cd9-4bbf-89b8-32f9db64d4fb.rna_seq.chimeric.gdc_realn.bam 304655671 BAM chimeric harmonized CPTAC3 0facf7e3-99e4-4a99-9827-3446264c537b 34592bfac614cc3c3a46d702a42a540a { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00795.RNA-Seq.chimeric.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 17317246-10b4-47aa-a5a1-7fc2e0f22cfd.rna_seq.chimeric.gdc_realn.bam 462643293 BAM chimeric harmonized CPTAC3 dad5f5fe-a018-487b-99af-f36de786537c 95ec4d0b672ddf636dfb3f359bdab9ed { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor' } -C3L-00795.RNA-Seq.genomic.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 e250a2f3-1cd9-4bbf-89b8-32f9db64d4fb.rna_seq.genomic.gdc_realn.bam 8275613363 BAM genomic harmonized CPTAC3 4148da03-9858-4f5e-a539-5776c5b84324 6eb52bfdec6b1c77ef548e4d7c18378e { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00795.RNA-Seq.genomic.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 17317246-10b4-47aa-a5a1-7fc2e0f22cfd.rna_seq.genomic.gdc_realn.bam 7989925418 BAM genomic harmonized CPTAC3 de4f5a58-6437-49c7-8d52-398804b7b9be 1fbf8eca7091510f2983d42017680a58 { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor' } -C3L-00795.RNA-Seq.R1_L007.T C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGAGCGTC-GTCCGTGC_S25_L007_R1_001.fastq.gz 3803721233 FASTQ R1_L007 unaligned CPTAC3 d8c01c7d-aae7-4d23-a437-15b0457b2291 1a4ec24c816e4656037343e989082e0e { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor' } -C3L-00795.RNA-Seq.R1_L008.A C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 210105_UNC32-K00270_0268_AHK7HMBBXY_TAAGTGGT-CTTAAGCC_S28_L008_R1_001.fastq.gz 3749868315 FASTQ R1_L008 unaligned CPTAC3 60da8d69-0096-4500-8d40-963b42393608 29cd37cd5a7a97b21a22d8750133d661 { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00795.RNA-Seq.R2_L007.T C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGAGCGTC-GTCCGTGC_S25_L007_R2_001.fastq.gz 4333563120 FASTQ R2_L007 unaligned CPTAC3 22e60829-f5a8-4b30-963e-dd6b19069950 8f5d0783d62899c2c5de2471ab4af6f6 { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor' } -C3L-00795.RNA-Seq.R2_L008.A C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 210105_UNC32-K00270_0268_AHK7HMBBXY_TAAGTGGT-CTTAAGCC_S28_L008_R2_001.fastq.gz 4344051452 FASTQ R2_L008 unaligned CPTAC3 0acef3b0-f83f-4558-ae54-1f6658fed925 1fbc5b5d00af59bd97928fa7d8cb6a92 { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00795.RNA-Seq.transcriptome.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 e250a2f3-1cd9-4bbf-89b8-32f9db64d4fb.rna_seq.transcriptome.gdc_realn.bam 8589887814 BAM transcriptome harmonized CPTAC3 45758e8f-c642-41e8-8dee-4db6ed72f438 80b6f88d4e41a7f96a1d4ebe6ad5f14e { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00795.RNA-Seq.transcriptome.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 17317246-10b4-47aa-a5a1-7fc2e0f22cfd.rna_seq.transcriptome.gdc_realn.bam 7549971230 BAM transcriptome harmonized CPTAC3 7a0640fa-7281-468d-931d-172ba270f2cb fd6f88f5298307853fe76ae723d24260 { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor' } +C3L-00795.RNA-Seq.chimeric.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 9c9404e4-ca1c-48c5-a121-65d75c5b7316.rna_seq.chimeric.gdc_realn.bam 304646200 BAM chimeric harmonized CPTAC3 4e23a54e-3838-4d5b-be3a-44498a37d071 ef340fbe194457c9da4218c57f9d9fd5 { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00795.RNA-Seq.chimeric.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 caf24cdb-2616-4551-ad22-c87b532c714a.rna_seq.chimeric.gdc_realn.bam 462636042 BAM chimeric harmonized CPTAC3 769b59df-52f5-42d5-a967-dcdbb0800063 9c6e8e0e25da2a0f7f943a8dbf9debab { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor' } +C3L-00795.RNA-Seq.genomic.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 9c9404e4-ca1c-48c5-a121-65d75c5b7316.rna_seq.genomic.gdc_realn.bam 8283598547 BAM genomic harmonized CPTAC3 bf57d7e1-34cf-4d60-86ec-fa021329db57 5e8e7f96e4a7cf6e94d2904fe670abbc { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00795.RNA-Seq.genomic.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 caf24cdb-2616-4551-ad22-c87b532c714a.rna_seq.genomic.gdc_realn.bam 7995674794 BAM genomic harmonized CPTAC3 d8338ba0-e107-45ef-b449-14ea19c0cc1b 900eeb532de21a46c36bdc7ac15ff05c { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor' } +C3L-00795.RNA-Seq.R1_L007.T C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGAGCGTC-GTCCGTGC_S25_L007_R1_001.fastq.gz 3803721233 FASTQ R1_L007 unaligned CPTAC3 d8c01c7d-aae7-4d23-a437-15b0457b2291 1a4ec24c816e4656037343e989082e0e { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00795.RNA-Seq.R1_L008.A C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 210105_UNC32-K00270_0268_AHK7HMBBXY_TAAGTGGT-CTTAAGCC_S28_L008_R1_001.fastq.gz 3749868315 FASTQ R1_L008 unaligned CPTAC3 60da8d69-0096-4500-8d40-963b42393608 29cd37cd5a7a97b21a22d8750133d661 { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00795.RNA-Seq.R2_L007.T C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGAGCGTC-GTCCGTGC_S25_L007_R2_001.fastq.gz 4333563120 FASTQ R2_L007 unaligned CPTAC3 22e60829-f5a8-4b30-963e-dd6b19069950 8f5d0783d62899c2c5de2471ab4af6f6 { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-00795.RNA-Seq.R2_L008.A C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 210105_UNC32-K00270_0268_AHK7HMBBXY_TAAGTGGT-CTTAAGCC_S28_L008_R2_001.fastq.gz 4344051452 FASTQ R2_L008 unaligned CPTAC3 0acef3b0-f83f-4558-ae54-1f6658fed925 1fbc5b5d00af59bd97928fa7d8cb6a92 { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-00795.RNA-Seq.transcriptome.A.hg38 C3L-00795 CCRCC RNA-Seq tissue_normal CPT0390410005 9c9404e4-ca1c-48c5-a121-65d75c5b7316.rna_seq.transcriptome.gdc_realn.bam 9771607477 BAM transcriptome harmonized CPTAC3 9eda9824-88b1-4959-8e60-18faa81214ad 5eefd7dc27e7b3f7d5c61f4c96f4eb7e { 'aliquot_tag': 'ALQ_e89ee70a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00795.RNA-Seq.transcriptome.T.hg38 C3L-00795 CCRCC RNA-Seq tumor CPT0390400009 caf24cdb-2616-4551-ad22-c87b532c714a.rna_seq.transcriptome.gdc_realn.bam 8668082954 BAM transcriptome harmonized CPTAC3 1eb2ddbd-92cc-445e-a43a-aa0b9de63219 3908c3ac7aab4f6284baf47388e247fe { 'aliquot_tag': 'ALQ_dc488291', 'gdc_sample_type': 'Primary Tumor' } C3L-00795.WGS.N C3L-00795 CCRCC WGS blood_normal CPT0390460002 CPT0390460002.WholeGenome.RP-2158.bam 21458217924 BAM aligned CPTAC3 ecab0bd2-3f38-4371-a9af-493c780372de 6bbd3b9a319b3726a3b610f78f1f3878 { 'aliquot_tag': 'ALQ_c4daaeb9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00795.WGS.N.hg38 C3L-00795 CCRCC WGS blood_normal CPT0390460002 9446dc9c-5b27-485b-9a28-8d42137fb140_wgs_gdc_realn.bam 64722217360 BAM harmonized CPTAC3 4562b7fe-e382-4a9b-8bb4-628d45bfadbf 2049f2ec76a808e2be8cd826de2c6e45 { 'aliquot_tag': 'ALQ_c4daaeb9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00795.WGS.T C3L-00795 CCRCC WGS tumor CPT0390400006 CPT0390400006.WholeGenome.RP-2158.bam 23686428322 BAM aligned CPTAC3 d9386648-669f-4d93-a317-6e0a59a55e7b 7e8edc0d8a4d74f95b3c94790ed403ff { 'aliquot_tag': 'ALQ_4cf79f00', 'gdc_sample_type': 'Primary Tumor' } @@ -3776,8 +4250,8 @@ C3L-00796.miRNA-Seq.T C3L-00796 CCRCC miRNA-Seq tumor CPT0065750006 181113_UNC31 C3L-00796.miRNA-Seq.T.hg38 C3L-00796 CCRCC miRNA-Seq tumor CPT0065750006 7d00c1eb-9dc9-430a-93e6-dcef4d869fca_mirnaseq_gdc_realn.bam 219148533 BAM harmonized CPTAC3 fbd0dfb8-40b8-4587-aeed-642c8eb0ab1b c209f4f55220fa21c1490e2d5189acad { 'aliquot_tag': 'ALQ_b0166310', 'gdc_sample_type': 'Primary Tumor' } C3L-00796.RNA-Seq.chimeric.T.hg38 C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 bf40cf03-51f9-4f27-baa0-0812ec044f2d.rna_seq.chimeric.gdc_realn.bam 25085483 BAM chimeric harmonized CPTAC3 00ca68d2-a1cb-489d-9e18-aa55763f0306 6762b77ea81f50ed815594f5d22ba116 { 'aliquot_tag': 'ALQ_b0166310', 'gdc_sample_type': 'Primary Tumor' } C3L-00796.RNA-Seq.genomic.T.hg38 C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 bf40cf03-51f9-4f27-baa0-0812ec044f2d.rna_seq.genomic.gdc_realn.bam 7213439475 BAM genomic harmonized CPTAC3 42f8ee7e-aff7-4e7a-a9cf-fa04d6926c42 7305c84b717f5168875ccd4e76ac75c1 { 'aliquot_tag': 'ALQ_b0166310', 'gdc_sample_type': 'Primary Tumor' } -C3L-00796.RNA-Seq.R1_L001.T C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L001_R1_001.fastq.gz 3647739042 FASTQ R1_L001 unaligned CPTAC3 b85c5a99-7f85-4c3b-bb05-186d0a4b4dbc dce9a92f7368c36a9ac9bf382e5444b2 { 'aliquot_tag': 'ALQ_b0166310', 'gdc_sample_type': 'Primary Tumor' } -C3L-00796.RNA-Seq.R2_L001.T C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L001_R2_001.fastq.gz 3877592392 FASTQ R2_L001 unaligned CPTAC3 f624070c-7dde-4481-afb4-c2b17f00d0db 6b73fbad230321c283c932346a9e128b { 'aliquot_tag': 'ALQ_b0166310', 'gdc_sample_type': 'Primary Tumor' } +C3L-00796.RNA-Seq.R1_L001.T C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L001_R1_001.fastq.gz 3647739042 FASTQ R1_L001 unaligned CPTAC3 b85c5a99-7f85-4c3b-bb05-186d0a4b4dbc dce9a92f7368c36a9ac9bf382e5444b2 { 'aliquot_tag': 'ALQ_b0166310', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00796.RNA-Seq.R2_L001.T C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 170828_UNC31-K00269_0077_AHLF33BBXX_AGTCAA_S3_L001_R2_001.fastq.gz 3877592392 FASTQ R2_L001 unaligned CPTAC3 f624070c-7dde-4481-afb4-c2b17f00d0db 6b73fbad230321c283c932346a9e128b { 'aliquot_tag': 'ALQ_b0166310', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-00796.RNA-Seq.transcriptome.T.hg38 C3L-00796 CCRCC RNA-Seq tumor CPT0065750006 bf40cf03-51f9-4f27-baa0-0812ec044f2d.rna_seq.transcriptome.gdc_realn.bam 9704683776 BAM transcriptome harmonized CPTAC3 fea91530-3577-4a70-998a-8da1cafc97f0 cd97fcc8ef5bca645ef1975b137aee4f { 'aliquot_tag': 'ALQ_b0166310', 'gdc_sample_type': 'Primary Tumor' } C3L-00796.WGS.N C3L-00796 CCRCC WGS blood_normal CPT0067670002 CPT0067670002.WholeGenome.RP-1303.bam 76610002151 BAM aligned CPTAC3 e88b9810-f079-404e-b530-39e3180769bc bef134487350d135fd5ba0617e872d8e { 'aliquot_tag': 'ALQ_917836e5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00796.WGS.N.hg38 C3L-00796 CCRCC WGS blood_normal CPT0067670002 84092027-a164-403e-9910-428f99097697_gdc_realn.bam 116014166470 BAM harmonized CPTAC3 09da6812-c956-4b0a-8197-22750ad5fe22 beb9292b8d6e66d462fa160af817d1ba { 'aliquot_tag': 'ALQ_917836e5', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3792,9 +4266,9 @@ C3L-00799.MethArray.Red.T C3L-00799 CCRCC Methylation Array tumor CPT0025230009 C3L-00799.miRNA-Seq.T C3L-00799 CCRCC miRNA-Seq tumor CPT0025230006 180924_UNC31-K00269_0154_AHWTMLBBXX_GATCAG_S19_L001_R1_001.unaln.bam 232714153 BAM unaligned CPTAC3 4cd3f600-db95-44ee-aeaa-23fe5be8bd90 705f5fd507ba2f77778bcaf44b7d44fb { 'aliquot_tag': 'ALQ_ebd109f9', 'gdc_sample_type': 'Primary Tumor' } C3L-00799.miRNA-Seq.T.hg38 C3L-00799 CCRCC miRNA-Seq tumor CPT0025230006 b97d1a52-3605-4daa-a7fa-247b05699086_mirnaseq_gdc_realn.bam 253452078 BAM harmonized CPTAC3 e36313e1-ff0d-4ddf-88ba-8fd349ed4725 17055b29f459ca39f4bb12e6038e9efc { 'aliquot_tag': 'ALQ_ebd109f9', 'gdc_sample_type': 'Primary Tumor' } C3L-00799.RNA-Seq.chimeric.T.hg38 C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 ef9fa055-3072-4a61-90bb-c3373d9a606b.rna_seq.chimeric.gdc_realn.bam 89190442 BAM chimeric harmonized CPTAC3 48a067c5-7bd3-4012-8af6-539d8a27473d 73bedfe701d440c651d6eba6b438b724 { 'aliquot_tag': 'ALQ_ebd109f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-00799.RNA-Seq.genomic.T.hg38 C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 ef9fa055-3072-4a61-90bb-c3373d9a606b.rna_seq.genomic.gdc_realn.bam 8898103423 BAM genomic harmonized CPTAC3 d8531b0b-13e6-4a0b-a39f-b72a8edc757b b9e34d8294317221654a8767e036820f { 'aliquot_tag': 'ALQ_ebd109f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-00799.RNA-Seq.R1_L007.T C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTGAAA_S16_L007_R1_001.fastq.gz 4340817274 FASTQ R1_L007 unaligned CPTAC3 6909bf98-cfab-4785-94df-39493636749c 935ac003bc9de2ee577a554f451f0117 { 'aliquot_tag': 'ALQ_ebd109f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-00799.RNA-Seq.R2_L007.T C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTGAAA_S16_L007_R2_001.fastq.gz 4586496523 FASTQ R2_L007 unaligned CPTAC3 8640020d-5e63-47cb-a682-379ef0c43911 073bd722ba008c5e943654b3d72ce097 { 'aliquot_tag': 'ALQ_ebd109f9', 'gdc_sample_type': 'Primary Tumor' } +C3L-00799.RNA-Seq.genomic.T.hg38 C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 ef9fa055-3072-4a61-90bb-c3373d9a606b.rna_seq.genomic.gdc_realn.bam 8898103423 BAM genomic harmonized CPTAC3 930ff244-9aaf-4df1-82b7-c4efa9da77da b9e34d8294317221654a8767e036820f { 'aliquot_tag': 'ALQ_ebd109f9', 'gdc_sample_type': 'Primary Tumor' } +C3L-00799.RNA-Seq.R1_L007.T C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTGAAA_S16_L007_R1_001.fastq.gz 4340817274 FASTQ R1_L007 unaligned CPTAC3 6909bf98-cfab-4785-94df-39493636749c 935ac003bc9de2ee577a554f451f0117 { 'aliquot_tag': 'ALQ_ebd109f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00799.RNA-Seq.R2_L007.T C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTGAAA_S16_L007_R2_001.fastq.gz 4586496523 FASTQ R2_L007 unaligned CPTAC3 8640020d-5e63-47cb-a682-379ef0c43911 073bd722ba008c5e943654b3d72ce097 { 'aliquot_tag': 'ALQ_ebd109f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-00799.RNA-Seq.transcriptome.T.hg38 C3L-00799 CCRCC RNA-Seq tumor CPT0025230006 ef9fa055-3072-4a61-90bb-c3373d9a606b.rna_seq.transcriptome.gdc_realn.bam 11869499232 BAM transcriptome harmonized CPTAC3 b7f6be2b-ac37-4121-8672-5f6201770835 2aa685a70a4b91146170f95af28535c5 { 'aliquot_tag': 'ALQ_ebd109f9', 'gdc_sample_type': 'Primary Tumor' } C3L-00799.WGS.N C3L-00799 CCRCC WGS blood_normal CPT0029440002 CPT0029440002.WholeGenome.RP-1303.bam 65751060077 BAM aligned CPTAC3 da8ed29c-ecaa-41e1-acd8-2311fb4fdf07 2b49ae3a02bd092df735c51cfa0e8218 { 'aliquot_tag': 'ALQ_4f659899', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00799.WGS.N.hg38 C3L-00799 CCRCC WGS blood_normal CPT0029440002 d621aff7-2313-4cf3-b903-47e3694c13e5_gdc_realn.bam 95506295695 BAM harmonized CPTAC3 159b4afe-b1e0-4e35-8645-02057350c16c db758732436214f6a8ddeb52dad9be4b { 'aliquot_tag': 'ALQ_4f659899', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3809,9 +4283,9 @@ C3L-00800.MethArray.Red.T C3L-00800 CCRCC Methylation Array tumor CPT0025290009 C3L-00800.miRNA-Seq.T C3L-00800 CCRCC miRNA-Seq tumor CPT0025290006 181113_UNC31-K00269_0164_AH23NNBBXY_CAAAAG_S4_L003_R1_001.unaln.bam 228444479 BAM unaligned CPTAC3 6ac9f63f-8162-49e1-9961-2415fd56f30d 3661ba9799a9ae9f1dbb46570eaff4be { 'aliquot_tag': 'ALQ_a1611158', 'gdc_sample_type': 'Primary Tumor' } C3L-00800.miRNA-Seq.T.hg38 C3L-00800 CCRCC miRNA-Seq tumor CPT0025290006 244f0e46-7475-4cfb-a38c-002a96971108_mirnaseq_gdc_realn.bam 251011501 BAM harmonized CPTAC3 ba96ac4c-6cea-4f45-8665-1ef148c97da3 57e7e6d0e280f440719ef62c11dc505b { 'aliquot_tag': 'ALQ_a1611158', 'gdc_sample_type': 'Primary Tumor' } C3L-00800.RNA-Seq.chimeric.T.hg38 C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 0150766b-320a-400a-a6e6-6f74dec37b1d.rna_seq.chimeric.gdc_realn.bam 99963060 BAM chimeric harmonized CPTAC3 8ceeeba1-a02b-442d-b32c-b068d64a860b ea63bb20c9bb8071437e26bd87fdf332 { 'aliquot_tag': 'ALQ_a1611158', 'gdc_sample_type': 'Primary Tumor' } -C3L-00800.RNA-Seq.genomic.T.hg38 C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 0150766b-320a-400a-a6e6-6f74dec37b1d.rna_seq.genomic.gdc_realn.bam 9738450300 BAM genomic harmonized CPTAC3 2bf651d4-274e-43fb-8006-95fec6fb006f 44db48e22a80ce968ebfab920973a29c { 'aliquot_tag': 'ALQ_a1611158', 'gdc_sample_type': 'Primary Tumor' } -C3L-00800.RNA-Seq.R1_L001.T C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L001_R1_001.fastq.gz 4662823186 FASTQ R1_L001 unaligned CPTAC3 85a4efc7-01aa-438e-b67c-9a1329b3ee90 6a04593f5aaa43bdc823c83e3941ddf0 { 'aliquot_tag': 'ALQ_a1611158', 'gdc_sample_type': 'Primary Tumor' } -C3L-00800.RNA-Seq.R2_L001.T C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L001_R2_001.fastq.gz 5118016100 FASTQ R2_L001 unaligned CPTAC3 571b76da-154b-46a3-9d5e-e65eec367ce8 2a2cde4da616bdd92a98643001236c22 { 'aliquot_tag': 'ALQ_a1611158', 'gdc_sample_type': 'Primary Tumor' } +C3L-00800.RNA-Seq.genomic.T.hg38 C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 0150766b-320a-400a-a6e6-6f74dec37b1d.rna_seq.genomic.gdc_realn.bam 9738450300 BAM genomic harmonized CPTAC3 5c41ce48-f87a-44b0-86ef-a7c6663f0ec6 44db48e22a80ce968ebfab920973a29c { 'aliquot_tag': 'ALQ_a1611158', 'gdc_sample_type': 'Primary Tumor' } +C3L-00800.RNA-Seq.R1_L001.T C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L001_R1_001.fastq.gz 4662823186 FASTQ R1_L001 unaligned CPTAC3 85a4efc7-01aa-438e-b67c-9a1329b3ee90 6a04593f5aaa43bdc823c83e3941ddf0 { 'aliquot_tag': 'ALQ_a1611158', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00800.RNA-Seq.R2_L001.T C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGGCC_S4_L001_R2_001.fastq.gz 5118016100 FASTQ R2_L001 unaligned CPTAC3 571b76da-154b-46a3-9d5e-e65eec367ce8 2a2cde4da616bdd92a98643001236c22 { 'aliquot_tag': 'ALQ_a1611158', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-00800.RNA-Seq.transcriptome.T.hg38 C3L-00800 CCRCC RNA-Seq tumor CPT0025290006 0150766b-320a-400a-a6e6-6f74dec37b1d.rna_seq.transcriptome.gdc_realn.bam 12379856707 BAM transcriptome harmonized CPTAC3 e454d907-96a1-4127-98b8-65f35dad9468 e2b9272c5d89ac2dadc0c0dbccc921e7 { 'aliquot_tag': 'ALQ_a1611158', 'gdc_sample_type': 'Primary Tumor' } C3L-00800.WGS.N C3L-00800 CCRCC WGS blood_normal CPT0029460002 CPT0029460002.WholeGenome.RP-1303.bam 60806556141 BAM aligned CPTAC3 f4e34d62-76d7-445b-a97c-52ae65438301 c31fa45c1316afd538f8e87b64e312d2 { 'aliquot_tag': 'ALQ_35a5cbf9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00800.WGS.N.hg38 C3L-00800 CCRCC WGS blood_normal CPT0029460002 315ae7de-a352-42c6-84df-468470b72af9_gdc_realn.bam 89799621222 BAM harmonized CPTAC3 0beccacb-bc6e-4118-af83-5c807c3aae8f b787319093521f3b32248c3d1dcc1272 { 'aliquot_tag': 'ALQ_35a5cbf9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3825,11 +4299,11 @@ C3L-00807.MethArray.Green.Tpb C3L-00807 AML Methylation Array tumor_peripheral_b C3L-00807.MethArray.Red.Tpb C3L-00807 AML Methylation Array tumor_peripheral_blood CPT0262160002 203561450006_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 9850a500-269c-432d-904e-739307380342 19751057e1268af936916108dfbba2d0 { 'aliquot_tag': 'ALQ_cdd328cc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00807.miRNA-Seq.Tpb C3L-00807 AML miRNA-Seq tumor_peripheral_blood CPT0262170002 190813_UNC32-K00270_0196_AH5MCWBBXY_GAGTGG_S8_L004_R1_001.unaln.bam 167813813 BAM unaligned CPTAC3 39758953-6c41-49d8-bda2-ff1447bb0f94 e1994ca6e692dce9cf954ca550d97c4a { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00807.miRNA-Seq.Tpb.hg38 C3L-00807 AML miRNA-Seq tumor_peripheral_blood CPT0262170002 62e606e2-f304-4820-9096-2302b3b8adb3_mirnaseq_gdc_realn.bam 196363962 BAM harmonized CPTAC3 a735b069-fdb8-4013-8878-496dc5492c50 4be4610840c5267c9c6e5f4a800a762f { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00807.RNA-Seq.chimeric.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 390dd381-8bd3-4ffd-8bd4-7e4cd600d3e6.rna_seq.chimeric.gdc_realn.bam 26923382 BAM chimeric harmonized CPTAC3 41467111-a8f8-49a8-b8e2-1dcd51b6c32b 21e9f1ca43d4923cf219ab67a9f74d02 { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00807.RNA-Seq.genomic.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 390dd381-8bd3-4ffd-8bd4-7e4cd600d3e6.rna_seq.genomic.gdc_realn.bam 6896255158 BAM genomic harmonized CPTAC3 8d2d1ec4-6a70-4028-a747-a0f9c9755456 be917e3ad1f6669c611b3264250a01fa { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00807.RNA-Seq.R1_L003.Tpb C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 190702_UNC32-K00270_0187_AH7FK2BBXY_CTCTCGTC-TATAACCT_S9_L003_R1_001.fastq.gz 3247473070 FASTQ R1_L003 unaligned CPTAC3 8a747393-0639-4d97-ac15-1707590bb135 2dbe4aad3ae30c444d920353c1dc0085 { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00807.RNA-Seq.R2_L003.Tpb C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 190702_UNC32-K00270_0187_AH7FK2BBXY_CTCTCGTC-TATAACCT_S9_L003_R2_001.fastq.gz 3560938323 FASTQ R2_L003 unaligned CPTAC3 c116d373-027e-4a79-a055-94b61358e8a3 06e1067c45d56e4a6e085e65272ae156 { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00807.RNA-Seq.transcriptome.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 390dd381-8bd3-4ffd-8bd4-7e4cd600d3e6.rna_seq.transcriptome.gdc_realn.bam 5624199463 BAM transcriptome harmonized CPTAC3 7e332425-20ce-4e2a-b7de-d05c996c7a43 db43c1dd77b0ec2419a3f0dc16c9af51 { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00807.RNA-Seq.chimeric.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 203c6ab3-33b5-497d-89c6-c86ee341d92f.rna_seq.chimeric.gdc_realn.bam 26913190 BAM chimeric harmonized CPTAC3 39535f49-fd42-405f-92ac-6894b66a960e b1b4748ae031388a009b1d0af56817eb { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00807.RNA-Seq.genomic.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 203c6ab3-33b5-497d-89c6-c86ee341d92f.rna_seq.genomic.gdc_realn.bam 6896604411 BAM genomic harmonized CPTAC3 2ffffb00-947a-4ea4-acff-5b494edd200f aeddebcd07bfe9ef91394b0c5e8b07d2 { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00807.RNA-Seq.R1_L003.Tpb C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 190702_UNC32-K00270_0187_AH7FK2BBXY_CTCTCGTC-TATAACCT_S9_L003_R1_001.fastq.gz 3247473070 FASTQ R1_L003 unaligned CPTAC3 8a747393-0639-4d97-ac15-1707590bb135 2dbe4aad3ae30c444d920353c1dc0085 { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L003' } +C3L-00807.RNA-Seq.R2_L003.Tpb C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 190702_UNC32-K00270_0187_AH7FK2BBXY_CTCTCGTC-TATAACCT_S9_L003_R2_001.fastq.gz 3560938323 FASTQ R2_L003 unaligned CPTAC3 c116d373-027e-4a79-a055-94b61358e8a3 06e1067c45d56e4a6e085e65272ae156 { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L003' } +C3L-00807.RNA-Seq.transcriptome.Tpb.hg38 C3L-00807 AML RNA-Seq tumor_peripheral_blood CPT0262170002 203c6ab3-33b5-497d-89c6-c86ee341d92f.rna_seq.transcriptome.gdc_realn.bam 6363558457 BAM transcriptome harmonized CPTAC3 c36e4031-a022-4172-bca2-fee36c561b00 9ab41c93bd0347bdafdf004164ef78c1 { 'aliquot_tag': 'ALQ_f0b3017c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00807.WGS.Nbc C3L-00807 AML WGS buccal_normal CPT0262150002 CPT0262150002.WholeGenome.RP-1303.bam 75552605388 BAM aligned CPTAC3 a4b6dd61-cd08-4d49-bbf2-d0a99323dca6 320ab01cca65a1d94a9d049816148cb0 { 'aliquot_tag': 'ALQ_8a73521c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00807.WGS.Nbc.hg38 C3L-00807 AML WGS buccal_normal CPT0262150002 479d2c1e-82ce-44c1-8ac1-1bb7c4435048_wgs_gdc_realn.bam 110378245946 BAM harmonized CPTAC3 701200bb-b981-401f-8c0f-60733974b257 950cc96697d0d3aaf1f5fa72b09b3b14 { 'aliquot_tag': 'ALQ_8a73521c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00807.WGS.Tpb C3L-00807 AML WGS tumor_peripheral_blood CPT0262160002 CPT0262160002.WholeGenome.RP-1303.bam 71785925582 BAM aligned CPTAC3 42fa2d10-0798-4450-99f9-5523b1dacaf3 f8b8557832c1becb0f0a02c9d0ef4e4d { 'aliquot_tag': 'ALQ_cdd328cc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } @@ -3842,11 +4316,11 @@ C3L-00810.MethArray.Green.Tpb C3L-00810 AML Methylation Array tumor_peripheral_b C3L-00810.MethArray.Red.Tpb C3L-00810 AML Methylation Array tumor_peripheral_blood CPT0262010002 203561450020_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 dfec6065-90ed-45f0-82c2-bdeb2d62d830 8f6e76ecd74d3ef3fe9b2580227d90de { 'aliquot_tag': 'ALQ_b4af2779', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00810.miRNA-Seq.Tpb C3L-00810 AML miRNA-Seq tumor_peripheral_blood CPT0262020002 190813_UNC32-K00270_0196_AH5MCWBBXY_CGTACG_S7_L004_R1_001.unaln.bam 166691946 BAM unaligned CPTAC3 b7eaa002-a923-4f17-ab4b-7c30ea1ea83f 7c98cd13e3c5f7eab37a5ad0adee4019 { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00810.miRNA-Seq.Tpb.hg38 C3L-00810 AML miRNA-Seq tumor_peripheral_blood CPT0262020002 fb63b178-fa49-40b5-b159-3829a22d3891_mirnaseq_gdc_realn.bam 193044938 BAM harmonized CPTAC3 3900303f-44f5-476d-b2c8-ba8cac4389c7 6abf7286d1f62af5c6eba4670d787baa { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00810.RNA-Seq.chimeric.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 f20605a1-0cbd-42dc-b012-cbbfa78f610a.rna_seq.chimeric.gdc_realn.bam 33797829 BAM chimeric harmonized CPTAC3 4cf15be9-98b4-4e75-807f-7528f7aaa2f0 9a52e74c696857b0ef9c81361ba8445f { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00810.RNA-Seq.genomic.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 f20605a1-0cbd-42dc-b012-cbbfa78f610a.rna_seq.genomic.gdc_realn.bam 6057568928 BAM genomic harmonized CPTAC3 999dad27-951c-49d7-9672-fa81956a7b3b 20324b6596eb5fb299021901ea7a746d { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00810.RNA-Seq.R1_L004.Tpb C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 190715_UNC31-K00269_0232_BH7H7CBBXY_TCTCTACT-CGCGGTTC_S16_L004_R1_001.fastq.gz 2913159678 FASTQ R1_L004 unaligned CPTAC3 bfe8cb7e-970f-4949-ae57-48159f412d82 86a1fa8c6e44654622856f61fdfee4b6 { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00810.RNA-Seq.R2_L004.Tpb C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 190715_UNC31-K00269_0232_BH7H7CBBXY_TCTCTACT-CGCGGTTC_S16_L004_R2_001.fastq.gz 3160832095 FASTQ R2_L004 unaligned CPTAC3 59239c3a-eb53-418a-9c4d-45f19dfa72d6 4b1435e26eccc4c7cfaae6d530b19ab2 { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-00810.RNA-Seq.transcriptome.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 f20605a1-0cbd-42dc-b012-cbbfa78f610a.rna_seq.transcriptome.gdc_realn.bam 4033031671 BAM transcriptome harmonized CPTAC3 60c5547f-39e6-43e6-b4a8-7e756ae87b04 b0f07c279dcae8369f0b8bd5981eda7d { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00810.RNA-Seq.chimeric.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 ce940bef-94f9-4224-b9a0-47b40157aab5.rna_seq.chimeric.gdc_realn.bam 33784209 BAM chimeric harmonized CPTAC3 5c37ff33-2e10-48d9-972a-e603591f037a b808e0ba937ef5c93ad0b2478cffd724 { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00810.RNA-Seq.genomic.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 ce940bef-94f9-4224-b9a0-47b40157aab5.rna_seq.genomic.gdc_realn.bam 6058300861 BAM genomic harmonized CPTAC3 bfca4bd8-f71a-4221-9c8d-ce5f91c4ed48 9d90974c0fc397a1832478b1701cfc9f { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-00810.RNA-Seq.R1_L004.Tpb C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 190715_UNC31-K00269_0232_BH7H7CBBXY_TCTCTACT-CGCGGTTC_S16_L004_R1_001.fastq.gz 2913159678 FASTQ R1_L004 unaligned CPTAC3 bfe8cb7e-970f-4949-ae57-48159f412d82 86a1fa8c6e44654622856f61fdfee4b6 { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L004' } +C3L-00810.RNA-Seq.R2_L004.Tpb C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 190715_UNC31-K00269_0232_BH7H7CBBXY_TCTCTACT-CGCGGTTC_S16_L004_R2_001.fastq.gz 3160832095 FASTQ R2_L004 unaligned CPTAC3 59239c3a-eb53-418a-9c4d-45f19dfa72d6 4b1435e26eccc4c7cfaae6d530b19ab2 { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L004' } +C3L-00810.RNA-Seq.transcriptome.Tpb.hg38 C3L-00810 AML RNA-Seq tumor_peripheral_blood CPT0262020002 ce940bef-94f9-4224-b9a0-47b40157aab5.rna_seq.transcriptome.gdc_realn.bam 4573701080 BAM transcriptome harmonized CPTAC3 6a8159e8-5c33-4ed1-b363-1b49efcd2ba7 5df28e559088399a3035ef82dc8ac7b7 { 'aliquot_tag': 'ALQ_f30f5da9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-00810.WGS.Nbc C3L-00810 AML WGS buccal_normal CPT0262000002 CPT0262000002.WholeGenome.RP-1303.bam 80588637814 BAM aligned CPTAC3 d7cf7b44-30e6-476c-bb34-d428a5974d5a 3504cc7a6253e5f83710a5158f502f47 { 'aliquot_tag': 'ALQ_89cf0ec9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00810.WGS.Nbc.hg38 C3L-00810 AML WGS buccal_normal CPT0262000002 a98b51e2-67be-4afb-8bfa-ff5c19ed0b8c_wgs_gdc_realn.bam 117141414310 BAM harmonized CPTAC3 0fad2924-7c7b-4dfe-92b0-bde428f1823a 763cfcf43cf5e5fb07a85490fc245943 { 'aliquot_tag': 'ALQ_89cf0ec9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-00810.WGS.Tpb C3L-00810 AML WGS tumor_peripheral_blood CPT0262010002 CPT0262010002.WholeGenome.RP-1303.bam 72142513624 BAM aligned CPTAC3 de0973e4-f656-4983-b48c-2141bb0ce061 4f7ebedee9ada0487c970a0190cf5745 { 'aliquot_tag': 'ALQ_b4af2779', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } @@ -3860,9 +4334,9 @@ C3L-00812.MethArray.Red.T C3L-00812 CCRCC Methylation Array tumor CPT0025350009 C3L-00812.miRNA-Seq.T C3L-00812 CCRCC miRNA-Seq tumor CPT0025350006 181113_UNC31-K00269_0164_AH23NNBBXY_CAACTA_S5_L003_R1_001.unaln.bam 250037965 BAM unaligned CPTAC3 fa22b9bf-14a8-40e4-a9a9-586049f1f3f1 57374c28a0d78d1e02e911b85eb4d234 { 'aliquot_tag': 'ALQ_afcd2ffc', 'gdc_sample_type': 'Primary Tumor' } C3L-00812.miRNA-Seq.T.hg38 C3L-00812 CCRCC miRNA-Seq tumor CPT0025350006 94abf4fb-3d8f-49c5-94ba-fede597f1f03_mirnaseq_gdc_realn.bam 279250047 BAM harmonized CPTAC3 2121ec54-c1fb-44b5-bbd2-6aab2b5525a8 d774296caa08c50572ac9c20b46e16e1 { 'aliquot_tag': 'ALQ_afcd2ffc', 'gdc_sample_type': 'Primary Tumor' } C3L-00812.RNA-Seq.chimeric.T.hg38 C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 965a22b3-61c6-4e03-ad12-026e1b399bd8.rna_seq.chimeric.gdc_realn.bam 66262745 BAM chimeric harmonized CPTAC3 c16178d5-8570-4140-868b-3ff2d5095149 b37d1fb2e49512e306bf32e8da2f853f { 'aliquot_tag': 'ALQ_afcd2ffc', 'gdc_sample_type': 'Primary Tumor' } -C3L-00812.RNA-Seq.genomic.T.hg38 C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 965a22b3-61c6-4e03-ad12-026e1b399bd8.rna_seq.genomic.gdc_realn.bam 8200783169 BAM genomic harmonized CPTAC3 fec27e0a-6da7-4c95-853f-d7935be7ff74 28e76aa3fbd287ad95fccd9b3422279d { 'aliquot_tag': 'ALQ_afcd2ffc', 'gdc_sample_type': 'Primary Tumor' } -C3L-00812.RNA-Seq.R1_L007.T C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTTTCG_S5_L007_R1_001.fastq.gz 3612405094 FASTQ R1_L007 unaligned CPTAC3 abf42781-c4d0-4a52-b329-8de564805f8b a5cc76493fc2cdcd2eff8488b2fe4de2 { 'aliquot_tag': 'ALQ_afcd2ffc', 'gdc_sample_type': 'Primary Tumor' } -C3L-00812.RNA-Seq.R2_L007.T C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTTTCG_S5_L007_R2_001.fastq.gz 3957100302 FASTQ R2_L007 unaligned CPTAC3 e3515d50-bb69-4fb5-89f7-441d3db64a27 046424cf21232c1d12431dc25ed7d571 { 'aliquot_tag': 'ALQ_afcd2ffc', 'gdc_sample_type': 'Primary Tumor' } +C3L-00812.RNA-Seq.genomic.T.hg38 C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 965a22b3-61c6-4e03-ad12-026e1b399bd8.rna_seq.genomic.gdc_realn.bam 8200783169 BAM genomic harmonized CPTAC3 610fc761-4059-4aa4-92e4-6697715ffe32 28e76aa3fbd287ad95fccd9b3422279d { 'aliquot_tag': 'ALQ_afcd2ffc', 'gdc_sample_type': 'Primary Tumor' } +C3L-00812.RNA-Seq.R1_L007.T C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTTTCG_S5_L007_R1_001.fastq.gz 3612405094 FASTQ R1_L007 unaligned CPTAC3 abf42781-c4d0-4a52-b329-8de564805f8b a5cc76493fc2cdcd2eff8488b2fe4de2 { 'aliquot_tag': 'ALQ_afcd2ffc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00812.RNA-Seq.R2_L007.T C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 170823_UNC31-K00269_0076_BHLCTFBBXX_GTTTCG_S5_L007_R2_001.fastq.gz 3957100302 FASTQ R2_L007 unaligned CPTAC3 e3515d50-bb69-4fb5-89f7-441d3db64a27 046424cf21232c1d12431dc25ed7d571 { 'aliquot_tag': 'ALQ_afcd2ffc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-00812.RNA-Seq.transcriptome.T.hg38 C3L-00812 CCRCC RNA-Seq tumor CPT0025350006 965a22b3-61c6-4e03-ad12-026e1b399bd8.rna_seq.transcriptome.gdc_realn.bam 9358430075 BAM transcriptome harmonized CPTAC3 3a4e0cef-744e-424a-a447-bfdf72b7d0b4 bc6828684cd576dd61881d97999432ec { 'aliquot_tag': 'ALQ_afcd2ffc', 'gdc_sample_type': 'Primary Tumor' } C3L-00812.WGS.N C3L-00812 CCRCC WGS blood_normal CPT0029480002 CPT0029480002.WholeGenome.RP-1303.bam 59951874176 BAM aligned CPTAC3 317bf541-ff75-4160-b7a3-3f40e0a6dba1 020d386009ba09c7bce6a4aee221f382 { 'aliquot_tag': 'ALQ_8a957598', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00812.WGS.N.hg38 C3L-00812 CCRCC WGS blood_normal CPT0029480002 eef37503-1d13-474e-a21e-14f85891bfb6_gdc_realn.bam 86532498944 BAM harmonized CPTAC3 7ee344ee-0ee5-450d-a98f-59ea2d43bfed c0c38aead18e3f88730766f46ac26bba { 'aliquot_tag': 'ALQ_8a957598', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3877,9 +4351,9 @@ C3L-00813.MethArray.Red.T C3L-00813 CCRCC Methylation Array tumor CPT0015810013 C3L-00813.miRNA-Seq.T C3L-00813 CCRCC miRNA-Seq tumor CPT0015810009 181113_UNC31-K00269_0164_AH23NNBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 224887107 BAM unaligned CPTAC3 8d127064-4c1c-4121-a39e-6548377381f7 4fd52da108f6d198ad26f9ccb6d6f676 { 'aliquot_tag': 'ALQ_2eba638d', 'gdc_sample_type': 'Primary Tumor' } C3L-00813.miRNA-Seq.T.hg38 C3L-00813 CCRCC miRNA-Seq tumor CPT0015810009 96e347cf-b5c6-46af-a8c6-8ffc8cb0288e_mirnaseq_gdc_realn.bam 254067251 BAM harmonized CPTAC3 6af3875d-53e6-41dd-af28-77921b289be5 d17892b1c4da0cc381cf0c5c5b1abea2 { 'aliquot_tag': 'ALQ_2eba638d', 'gdc_sample_type': 'Primary Tumor' } C3L-00813.RNA-Seq.chimeric.T.hg38 C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 200f0281-642a-4841-a785-558c83dee285.rna_seq.chimeric.gdc_realn.bam 61593527 BAM chimeric harmonized CPTAC3 04200873-03c3-482f-b737-a2701fdc6561 2d21053528fb9290e7d442837b8e9d81 { 'aliquot_tag': 'ALQ_2eba638d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00813.RNA-Seq.genomic.T.hg38 C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 200f0281-642a-4841-a785-558c83dee285.rna_seq.genomic.gdc_realn.bam 7978272108 BAM genomic harmonized CPTAC3 df02eb09-93b9-4692-8de6-9232bbe1cd28 5b5d3df5048092e6ea8977365a70cb1c { 'aliquot_tag': 'ALQ_2eba638d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00813.RNA-Seq.R1_L002.T C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 170818_UNC32-K00270_0051_BHLCCHBBXX_ATGTCA_S7_L002_R1_001.fastq.gz 3946073267 FASTQ R1_L002 unaligned CPTAC3 a117dea5-d8bb-459c-bc39-6f343d8d5b72 8a35a64608d5091d5f0740620827b370 { 'aliquot_tag': 'ALQ_2eba638d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00813.RNA-Seq.R2_L002.T C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 170818_UNC32-K00270_0051_BHLCCHBBXX_ATGTCA_S7_L002_R2_001.fastq.gz 4283241334 FASTQ R2_L002 unaligned CPTAC3 834c6145-bfcf-4387-9477-668190a210d3 1a3e6cd526c49d49c885118989e9f974 { 'aliquot_tag': 'ALQ_2eba638d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00813.RNA-Seq.genomic.T.hg38 C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 200f0281-642a-4841-a785-558c83dee285.rna_seq.genomic.gdc_realn.bam 7978272108 BAM genomic harmonized CPTAC3 fc92ce18-2a1d-44f7-bd47-b01a9b0440ca 5b5d3df5048092e6ea8977365a70cb1c { 'aliquot_tag': 'ALQ_2eba638d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00813.RNA-Seq.R1_L002.T C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 170818_UNC32-K00270_0051_BHLCCHBBXX_ATGTCA_S7_L002_R1_001.fastq.gz 3946073267 FASTQ R1_L002 unaligned CPTAC3 a117dea5-d8bb-459c-bc39-6f343d8d5b72 8a35a64608d5091d5f0740620827b370 { 'aliquot_tag': 'ALQ_2eba638d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00813.RNA-Seq.R2_L002.T C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 170818_UNC32-K00270_0051_BHLCCHBBXX_ATGTCA_S7_L002_R2_001.fastq.gz 4283241334 FASTQ R2_L002 unaligned CPTAC3 834c6145-bfcf-4387-9477-668190a210d3 1a3e6cd526c49d49c885118989e9f974 { 'aliquot_tag': 'ALQ_2eba638d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-00813.RNA-Seq.transcriptome.T.hg38 C3L-00813 CCRCC RNA-Seq tumor CPT0015810009 200f0281-642a-4841-a785-558c83dee285.rna_seq.transcriptome.gdc_realn.bam 11836945306 BAM transcriptome harmonized CPTAC3 040ea4d1-2c07-4980-acbc-22b349903c5d 9906dd195631e15ac92e98a1f28fe47f { 'aliquot_tag': 'ALQ_2eba638d', 'gdc_sample_type': 'Primary Tumor' } C3L-00813.WGS.N C3L-00813 CCRCC WGS blood_normal CPT0018370002 CPT0018370002.WholeGenome.RP-1303.bam 70121087469 BAM aligned CPTAC3 d30961cd-9174-4858-8fcb-90a118c0db08 fbc3766fc88cf1e4cc89ac74eb05528d { 'aliquot_tag': 'ALQ_3d38dea6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00813.WGS.N.hg38 C3L-00813 CCRCC WGS blood_normal CPT0018370002 0bbc61b3-23ba-496e-a17b-742f0fd3c780_gdc_realn.bam 111257920827 BAM harmonized CPTAC3 792744c0-d9c5-4271-a6a7-8fe408482ff2 9224c85a13f920c3564420ede78b14df { 'aliquot_tag': 'ALQ_3d38dea6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3900,11 +4374,11 @@ C3L-00814.miRNA-Seq.T.hg38 C3L-00814 CCRCC miRNA-Seq tumor CPT0065810006 511b4c0 C3L-00814.RNA-Seq.chimeric.A.hg38 C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 0476562e-e1f1-4864-b711-76e5ff5431d4.rna_seq.chimeric.gdc_realn.bam 41540068 BAM chimeric harmonized CPTAC3 6eeba53f-ec0f-4fc1-91aa-fb85346b9a88 ffe100853daf8804c84348754aa44ac7 { 'aliquot_tag': 'ALQ_f3600dd5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00814.RNA-Seq.chimeric.T.hg38 C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 88c1f2a6-3ee7-48f0-862f-5930df1804c3.rna_seq.chimeric.gdc_realn.bam 31329232 BAM chimeric harmonized CPTAC3 6810b495-6b67-433b-9663-5243b3c05fb0 5c8b28f79e0846fe23779fdf7d764641 { 'aliquot_tag': 'ALQ_b4c07705', 'gdc_sample_type': 'Primary Tumor' } C3L-00814.RNA-Seq.genomic.A.hg38 C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 0476562e-e1f1-4864-b711-76e5ff5431d4.rna_seq.genomic.gdc_realn.bam 7499589853 BAM genomic harmonized CPTAC3 ebd9749b-c0fd-4e43-8ce7-0ca8e93bda45 3cd956357872c81f5d13472c42edef51 { 'aliquot_tag': 'ALQ_f3600dd5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00814.RNA-Seq.genomic.T.hg38 C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 88c1f2a6-3ee7-48f0-862f-5930df1804c3.rna_seq.genomic.gdc_realn.bam 7535796418 BAM genomic harmonized CPTAC3 36152147-0f80-4d95-bd45-e80d318fba6f ec1e065f6c087585a6f4941a7bc2537e { 'aliquot_tag': 'ALQ_b4c07705', 'gdc_sample_type': 'Primary Tumor' } -C3L-00814.RNA-Seq.R1_L004.T C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L004_R1_001.fastq.gz 3709278929 FASTQ R1_L004 unaligned CPTAC3 39918e6c-f138-416c-b920-ad55050089e9 2d0ffb776bf851cdd877b22544693fa7 { 'aliquot_tag': 'ALQ_b4c07705', 'gdc_sample_type': 'Primary Tumor' } -C3L-00814.RNA-Seq.R1_L005.A C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L005_R1_001.fastq.gz 3652042216 FASTQ R1_L005 unaligned CPTAC3 37f96ce9-71ea-4623-821b-3a70e23ca2ec 1a42796668b7be956c9b7680e8cba0c4 { 'aliquot_tag': 'ALQ_f3600dd5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00814.RNA-Seq.R2_L004.T C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L004_R2_001.fastq.gz 3989624906 FASTQ R2_L004 unaligned CPTAC3 de1b355e-e95d-4d9e-b78d-1158f45d334a 4496183825d92ca20d99c72709954e39 { 'aliquot_tag': 'ALQ_b4c07705', 'gdc_sample_type': 'Primary Tumor' } -C3L-00814.RNA-Seq.R2_L005.A C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L005_R2_001.fastq.gz 4004692485 FASTQ R2_L005 unaligned CPTAC3 9af9f0fe-0a10-4b2d-90fc-74d26a2c4766 7b7cccb26aeb1bb3285119cdd20b8b41 { 'aliquot_tag': 'ALQ_f3600dd5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00814.RNA-Seq.genomic.T.hg38 C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 88c1f2a6-3ee7-48f0-862f-5930df1804c3.rna_seq.genomic.gdc_realn.bam 7535796418 BAM genomic harmonized CPTAC3 59c383ee-a015-484b-9533-97e868305503 ec1e065f6c087585a6f4941a7bc2537e { 'aliquot_tag': 'ALQ_b4c07705', 'gdc_sample_type': 'Primary Tumor' } +C3L-00814.RNA-Seq.R1_L004.T C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L004_R1_001.fastq.gz 3709278929 FASTQ R1_L004 unaligned CPTAC3 39918e6c-f138-416c-b920-ad55050089e9 2d0ffb776bf851cdd877b22544693fa7 { 'aliquot_tag': 'ALQ_b4c07705', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00814.RNA-Seq.R1_L005.A C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L005_R1_001.fastq.gz 3652042216 FASTQ R1_L005 unaligned CPTAC3 37f96ce9-71ea-4623-821b-3a70e23ca2ec 1a42796668b7be956c9b7680e8cba0c4 { 'aliquot_tag': 'ALQ_f3600dd5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00814.RNA-Seq.R2_L004.T C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L004_R2_001.fastq.gz 3989624906 FASTQ R2_L004 unaligned CPTAC3 de1b355e-e95d-4d9e-b78d-1158f45d334a 4496183825d92ca20d99c72709954e39 { 'aliquot_tag': 'ALQ_b4c07705', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00814.RNA-Seq.R2_L005.A C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L005_R2_001.fastq.gz 4004692485 FASTQ R2_L005 unaligned CPTAC3 9af9f0fe-0a10-4b2d-90fc-74d26a2c4766 7b7cccb26aeb1bb3285119cdd20b8b41 { 'aliquot_tag': 'ALQ_f3600dd5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-00814.RNA-Seq.transcriptome.A.hg38 C3L-00814 CCRCC RNA-Seq tissue_normal CPT0065820006 0476562e-e1f1-4864-b711-76e5ff5431d4.rna_seq.transcriptome.gdc_realn.bam 9173524185 BAM transcriptome harmonized CPTAC3 979c4778-1ba1-43ba-b6d8-f82184438e92 d30be2ed04c71c24842684371f584183 { 'aliquot_tag': 'ALQ_f3600dd5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00814.RNA-Seq.transcriptome.T.hg38 C3L-00814 CCRCC RNA-Seq tumor CPT0065810006 88c1f2a6-3ee7-48f0-862f-5930df1804c3.rna_seq.transcriptome.gdc_realn.bam 10398097711 BAM transcriptome harmonized CPTAC3 9a1eef21-784f-4a54-88e7-4e7732fe9575 fdb48bd768465f6a4f9393c87980a1e0 { 'aliquot_tag': 'ALQ_b4c07705', 'gdc_sample_type': 'Primary Tumor' } C3L-00814.WGS.A C3L-00814 CCRCC WGS tissue_normal CPT0065820009 CPT0065820009.WholeGenome.RP-1303.bam 58881456077 BAM aligned CPTAC3 1c3c83d8-d68f-4fa9-8d02-6085ba865e71 b30c628f7965a3f1a6ee7c634d1ac326 { 'aliquot_tag': 'ALQ_63df1044', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -3923,11 +4397,11 @@ C3L-00815.MethArray.Green.T C3L-00815 CCRCC Methylation Array tumor CPT008573000 C3L-00815.MethArray.Red.T C3L-00815 CCRCC Methylation Array tumor CPT0085730009 202176290095_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 3f604877-5694-4114-a757-3893ac4e135f 1fa7d1976c637e255826ceb62daa6ae3 { 'aliquot_tag': 'ALQ_ba639913', 'gdc_sample_type': 'Primary Tumor' } C3L-00815.miRNA-Seq.T C3L-00815 CCRCC miRNA-Seq tumor CPT0085730006 181108_UNC31-K00269_0163_BH23TVBBXY_TGACCA_S4_L008_R1_001.unaln.bam 227973893 BAM unaligned CPTAC3 e6c9171d-7dc0-43e9-93fe-7d0b98ef6d6b 4bd69a5e4a66d9846b5acb39814c5ff9 { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor' } C3L-00815.miRNA-Seq.T.hg38 C3L-00815 CCRCC miRNA-Seq tumor CPT0085730006 12c50653-4b54-401e-bb6b-fc87aad92208_mirnaseq_gdc_realn.bam 244333825 BAM harmonized CPTAC3 4c3b43b3-da00-493c-a7d0-94ac6258a23d b721b0ec69cfd00aac2489120db8707a { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor' } -C3L-00815.RNA-Seq.chimeric.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 fe0c5ea3-4615-40cf-ba12-9b36b995e39e.rna_seq.chimeric.gdc_realn.bam 42902098 BAM chimeric harmonized CPTAC3 71e7fcea-c80f-46a5-aaab-7a430188b79b 19f64ad24cc543f61653a32b1b11abdf { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor' } -C3L-00815.RNA-Seq.genomic.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 fe0c5ea3-4615-40cf-ba12-9b36b995e39e.rna_seq.genomic.gdc_realn.bam 9765729303 BAM genomic harmonized CPTAC3 67ffc392-d03a-4ef4-b2ed-19e7aa5f0cb2 5a7253a6a19cd2f037c4bfbf9129767f { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor' } -C3L-00815.RNA-Seq.R1_L002.T C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L002_R1_001.fastq.gz 4856376651 FASTQ R1_L002 unaligned CPTAC3 2ff4b902-07d3-45ad-a880-5808b1b9d437 d9180e8304f2ba38ebe776d72e69d946 { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor' } -C3L-00815.RNA-Seq.R2_L002.T C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L002_R2_001.fastq.gz 5336892992 FASTQ R2_L002 unaligned CPTAC3 1e009da5-b71d-4d50-80e6-f002f6ccd12e 25b2f70e5c1df404322ff8c12f304026 { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor' } -C3L-00815.RNA-Seq.transcriptome.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 fe0c5ea3-4615-40cf-ba12-9b36b995e39e.rna_seq.transcriptome.gdc_realn.bam 12369937224 BAM transcriptome harmonized CPTAC3 a2af1fa5-69cd-4c8c-80b3-c1125d95e3f3 85dc7c03ad2482ced8a43607299ff8aa { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor' } +C3L-00815.RNA-Seq.chimeric.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 a9402f33-f2de-4bb4-a5f3-ce275af0554f.rna_seq.chimeric.gdc_realn.bam 42879216 BAM chimeric harmonized CPTAC3 328186b1-03a3-47ea-a5f9-41f0119bee9b 6266caabf77cf098069c94358a708284 { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor' } +C3L-00815.RNA-Seq.genomic.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 a9402f33-f2de-4bb4-a5f3-ce275af0554f.rna_seq.genomic.gdc_realn.bam 9766323011 BAM genomic harmonized CPTAC3 a9dd1414-1baf-4974-975b-9fe3f288e02f f8f3cfa3c8dbc8451994c162ecbc42ea { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor' } +C3L-00815.RNA-Seq.R1_L002.T C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L002_R1_001.fastq.gz 4856376651 FASTQ R1_L002 unaligned CPTAC3 2ff4b902-07d3-45ad-a880-5808b1b9d437 d9180e8304f2ba38ebe776d72e69d946 { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00815.RNA-Seq.R2_L002.T C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L002_R2_001.fastq.gz 5336892992 FASTQ R2_L002 unaligned CPTAC3 1e009da5-b71d-4d50-80e6-f002f6ccd12e 25b2f70e5c1df404322ff8c12f304026 { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00815.RNA-Seq.transcriptome.T.hg38 C3L-00815 CCRCC RNA-Seq tumor CPT0085730006 a9402f33-f2de-4bb4-a5f3-ce275af0554f.rna_seq.transcriptome.gdc_realn.bam 14061603448 BAM transcriptome harmonized CPTAC3 cc671560-e75a-46d2-b915-1f10bf645d43 62d0f8f17a32159a1908de22cc2bb4fa { 'aliquot_tag': 'ALQ_2adc8482', 'gdc_sample_type': 'Primary Tumor' } C3L-00815.WGS.N C3L-00815 CCRCC WGS blood_normal CPT0086630002 CPT0086630002.WholeGenome.RP-1303.bam 85458167247 BAM aligned CPTAC3 cac10480-9df6-408b-8523-430d5ad8a090 4c6b22f38e31cd67694673fb2388e30d { 'aliquot_tag': 'ALQ_d70589a3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00815.WGS.N.hg38 C3L-00815 CCRCC WGS blood_normal CPT0086630002 ddeb7283-32f0-4c57-82df-5ab00872ee85_gdc_realn.bam 127875515573 BAM harmonized CPTAC3 8818b1b6-0755-4b63-a605-3bc287c78736 23575c65dab0a9d364ffcb3731a885cf { 'aliquot_tag': 'ALQ_d70589a3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00815.WGS.T C3L-00815 CCRCC WGS tumor CPT0085730009 CPT0085730009.WholeGenome.RP-1303.bam 66865376825 BAM aligned CPTAC3 a32ab6f5-3ac7-4b24-9f2e-667e738b906b 4d17141e93021e60d7ac8fa971e1aebc { 'aliquot_tag': 'ALQ_ba639913', 'gdc_sample_type': 'Primary Tumor' } @@ -3941,9 +4415,9 @@ C3L-00817.MethArray.Red.T C3L-00817 CCRCC Methylation Array tumor CPT0065870009 C3L-00817.miRNA-Seq.T C3L-00817 CCRCC miRNA-Seq tumor CPT0065870006 181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L001_R1_001.unaln.bam 193820422 BAM unaligned CPTAC3 cb545abc-4114-4447-a42f-f050bd961856 2e0da21febf7952fdd7142daf229f1eb { 'aliquot_tag': 'ALQ_3b8082a5', 'gdc_sample_type': 'Primary Tumor' } C3L-00817.miRNA-Seq.T.hg38 C3L-00817 CCRCC miRNA-Seq tumor CPT0065870006 ed31bdbf-f13f-4d3a-bd4c-e6ed56bcda7a_mirnaseq_gdc_realn.bam 214421811 BAM harmonized CPTAC3 e9758466-aebc-45ad-b315-00db376791fe c2571cab51d546f409c6a98bd03f624e { 'aliquot_tag': 'ALQ_3b8082a5', 'gdc_sample_type': 'Primary Tumor' } C3L-00817.RNA-Seq.chimeric.T.hg38 C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 38d8b84b-64ab-4793-a1f4-d841ef45d4ce.rna_seq.chimeric.gdc_realn.bam 30121023 BAM chimeric harmonized CPTAC3 664e5354-9e87-410b-9ccc-1819c5f48061 52d029fecfdb7686438be0fc199cb092 { 'aliquot_tag': 'ALQ_3b8082a5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00817.RNA-Seq.genomic.T.hg38 C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 38d8b84b-64ab-4793-a1f4-d841ef45d4ce.rna_seq.genomic.gdc_realn.bam 7843937519 BAM genomic harmonized CPTAC3 4777866b-3d51-450e-872e-858ad2a536fb 5e8b723fa086487918a07efc9d7dd4e8 { 'aliquot_tag': 'ALQ_3b8082a5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00817.RNA-Seq.R1_L004.T C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L004_R1_001.fastq.gz 3900525958 FASTQ R1_L004 unaligned CPTAC3 62cf4129-5b75-4b79-b8b8-1a6419447193 b22e173e5615aa92300bf86e163afcd1 { 'aliquot_tag': 'ALQ_3b8082a5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00817.RNA-Seq.R2_L004.T C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L004_R2_001.fastq.gz 4207616546 FASTQ R2_L004 unaligned CPTAC3 a50f0fbc-6696-4221-87c8-5189b3b668e0 eca75bf307831c9d48d1bb3a8867e04b { 'aliquot_tag': 'ALQ_3b8082a5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00817.RNA-Seq.genomic.T.hg38 C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 38d8b84b-64ab-4793-a1f4-d841ef45d4ce.rna_seq.genomic.gdc_realn.bam 7843937519 BAM genomic harmonized CPTAC3 7cfee693-b15f-4961-bf83-b53b804d1ca5 5e8b723fa086487918a07efc9d7dd4e8 { 'aliquot_tag': 'ALQ_3b8082a5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00817.RNA-Seq.R1_L004.T C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L004_R1_001.fastq.gz 3900525958 FASTQ R1_L004 unaligned CPTAC3 62cf4129-5b75-4b79-b8b8-1a6419447193 b22e173e5615aa92300bf86e163afcd1 { 'aliquot_tag': 'ALQ_3b8082a5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00817.RNA-Seq.R2_L004.T C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L004_R2_001.fastq.gz 4207616546 FASTQ R2_L004 unaligned CPTAC3 a50f0fbc-6696-4221-87c8-5189b3b668e0 eca75bf307831c9d48d1bb3a8867e04b { 'aliquot_tag': 'ALQ_3b8082a5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-00817.RNA-Seq.transcriptome.T.hg38 C3L-00817 CCRCC RNA-Seq tumor CPT0065870006 38d8b84b-64ab-4793-a1f4-d841ef45d4ce.rna_seq.transcriptome.gdc_realn.bam 10130355545 BAM transcriptome harmonized CPTAC3 ec8da02d-9626-4c16-882f-e85330146dc2 be106d148dee5347698ea0fda36b2436 { 'aliquot_tag': 'ALQ_3b8082a5', 'gdc_sample_type': 'Primary Tumor' } C3L-00817.WGS.N C3L-00817 CCRCC WGS blood_normal CPT0067710002 CPT0067710002.WholeGenome.RP-1303.bam 74356696274 BAM aligned CPTAC3 468234ba-5e33-40f9-820b-25fbea5d3638 0f5078147712598d77a0ef9408c1bf61 { 'aliquot_tag': 'ALQ_d56410e0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00817.WGS.N.hg38 C3L-00817 CCRCC WGS blood_normal CPT0067710002 cb8f35b5-827c-471e-8b72-b9430f2df9a7_gdc_realn.bam 112200297661 BAM harmonized CPTAC3 02393fcd-7994-41be-abc4-28cf5c63d384 36d6dac6266fc6ee6c6022a462209a46 { 'aliquot_tag': 'ALQ_d56410e0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -3963,12 +4437,12 @@ C3L-00819.miRNA-Seq.T C3L-00819 PDA miRNA-Seq tumor CPT0064090009 181012_UNC32-K C3L-00819.miRNA-Seq.T.hg38 C3L-00819 PDA miRNA-Seq tumor CPT0064090009 83b73a69-429c-4bcd-a1a3-b10278a2bbaa_mirnaseq_gdc_realn.bam 287605283 BAM harmonized CPTAC3 482a084e-1b7c-454d-a2f1-3d750ca9b21e a3a430091246c131c32f9c49996ee2ee { 'aliquot_tag': 'ALQ_5e2ba88c', 'gdc_sample_type': 'Primary Tumor' } C3L-00819.RNA-Seq.chimeric.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 b2e836bd-b943-474d-8dfb-ae136f78f762.rna_seq.chimeric.gdc_realn.bam 112422623 BAM chimeric harmonized CPTAC3 79f1cc17-4a16-47b6-9574-6d7921c58cd0 0ef310deddbc4519a8bb94108fe12567 { 'aliquot_tag': 'ALQ_35b82d79', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00819.RNA-Seq.chimeric.T.hg38 C3L-00819 PDA RNA-Seq tumor CPT0064090009 32717bd5-9c6f-48f4-bf35-8be425d2cc08.rna_seq.chimeric.gdc_realn.bam 33273642 BAM chimeric harmonized CPTAC3 cb78cfff-2e67-46ad-af4a-00972028b93f b45cef61a588963c90615e57300742c8 { 'aliquot_tag': 'ALQ_5e2ba88c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00819.RNA-Seq.genomic.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 b2e836bd-b943-474d-8dfb-ae136f78f762.rna_seq.genomic.gdc_realn.bam 8365765141 BAM genomic harmonized CPTAC3 60d85889-9b3b-41d6-ac42-1cdb21b4f915 d9a3dd903584bfc3a607a9c2da848f04 { 'aliquot_tag': 'ALQ_35b82d79', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00819.RNA-Seq.genomic.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 b2e836bd-b943-474d-8dfb-ae136f78f762.rna_seq.genomic.gdc_realn.bam 8365765141 BAM genomic harmonized CPTAC3 bb19aa2d-af49-4925-b0d8-a4e2f4168ebf d9a3dd903584bfc3a607a9c2da848f04 { 'aliquot_tag': 'ALQ_35b82d79', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00819.RNA-Seq.genomic.T.hg38 C3L-00819 PDA RNA-Seq tumor CPT0064090009 32717bd5-9c6f-48f4-bf35-8be425d2cc08.rna_seq.genomic.gdc_realn.bam 8581491176 BAM genomic harmonized CPTAC3 ee03dd97-2d6d-4f60-977d-f9694141cc88 480ee434035214cd608f45b69e218074 { 'aliquot_tag': 'ALQ_5e2ba88c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00819.RNA-Seq.R1_L006.T C3L-00819 PDA RNA-Seq tumor CPT0064090009 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L006_R1_001.fastq.gz 4041893731 FASTQ R1_L006 unaligned CPTAC3 314fa25c-3fa1-406b-a83e-184923a9a843 c274b755280b79070cb4cb06b8c52dad { 'aliquot_tag': 'ALQ_5e2ba88c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00819.RNA-Seq.R1_L008.A C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L008_R1_001.fastq.gz 3659327584 FASTQ R1_L008 unaligned CPTAC3 75647260-8a87-4afb-80d6-c24bceee3d65 007731421183be2dec77f7bd8dde346d { 'aliquot_tag': 'ALQ_35b82d79', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00819.RNA-Seq.R2_L006.T C3L-00819 PDA RNA-Seq tumor CPT0064090009 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L006_R2_001.fastq.gz 4418417585 FASTQ R2_L006 unaligned CPTAC3 b181b107-249a-4136-954f-0a3022387edc b257678e46388ae27a9a63dad2475307 { 'aliquot_tag': 'ALQ_5e2ba88c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00819.RNA-Seq.R2_L008.A C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L008_R2_001.fastq.gz 4213337668 FASTQ R2_L008 unaligned CPTAC3 dbabf608-5e8b-4202-916e-d6ed4b3015d2 2e8cef57f6756131748974946f465167 { 'aliquot_tag': 'ALQ_35b82d79', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00819.RNA-Seq.R1_L006.T C3L-00819 PDA RNA-Seq tumor CPT0064090009 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L006_R1_001.fastq.gz 4041893731 FASTQ R1_L006 unaligned CPTAC3 314fa25c-3fa1-406b-a83e-184923a9a843 c274b755280b79070cb4cb06b8c52dad { 'aliquot_tag': 'ALQ_5e2ba88c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00819.RNA-Seq.R1_L008.A C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L008_R1_001.fastq.gz 3659327584 FASTQ R1_L008 unaligned CPTAC3 75647260-8a87-4afb-80d6-c24bceee3d65 007731421183be2dec77f7bd8dde346d { 'aliquot_tag': 'ALQ_35b82d79', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00819.RNA-Seq.R2_L006.T C3L-00819 PDA RNA-Seq tumor CPT0064090009 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L006_R2_001.fastq.gz 4418417585 FASTQ R2_L006 unaligned CPTAC3 b181b107-249a-4136-954f-0a3022387edc b257678e46388ae27a9a63dad2475307 { 'aliquot_tag': 'ALQ_5e2ba88c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-00819.RNA-Seq.R2_L008.A C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L008_R2_001.fastq.gz 4213337668 FASTQ R2_L008 unaligned CPTAC3 dbabf608-5e8b-4202-916e-d6ed4b3015d2 2e8cef57f6756131748974946f465167 { 'aliquot_tag': 'ALQ_35b82d79', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-00819.RNA-Seq.transcriptome.A.hg38 C3L-00819 PDA RNA-Seq tissue_normal CPT0064110006 b2e836bd-b943-474d-8dfb-ae136f78f762.rna_seq.transcriptome.gdc_realn.bam 10340402864 BAM transcriptome harmonized CPTAC3 713edd23-5b9b-4512-9553-d0bb628d7aa1 d7a6508cb10620048f00f637c021d1c0 { 'aliquot_tag': 'ALQ_35b82d79', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00819.RNA-Seq.transcriptome.T.hg38 C3L-00819 PDA RNA-Seq tumor CPT0064090009 32717bd5-9c6f-48f4-bf35-8be425d2cc08.rna_seq.transcriptome.gdc_realn.bam 12652726539 BAM transcriptome harmonized CPTAC3 6f32276a-992e-468a-9819-afdcd14ba8a4 fe77d890850062198c74170cea6994d0 { 'aliquot_tag': 'ALQ_5e2ba88c', 'gdc_sample_type': 'Primary Tumor' } C3L-00819.Targeted.T C3L-00819 PDA Targeted Sequencing tumor CPT0064090006_1 CPT0064090006_1.CustomSelection.RP-1303.PDO-18786.bam 4221294593 BAM aligned CPTAC3 c6cbcd24-61f5-4991-82ce-3f4f2c9c2801 805fa5999bd513094faf18572ea64c51 { 'aliquot_tag': 'ALQ_6943b6d5', 'gdc_sample_type': 'Primary Tumor' } @@ -3994,9 +4468,9 @@ C3L-00881.MethArray.Red.T C3L-00881 PDA Methylation Array tumor CPT0017040007 20 C3L-00881.miRNA-Seq.T C3L-00881 PDA miRNA-Seq tumor CPT0017040010 180924_UNC31-K00269_0154_AHWTMLBBXX_CTAGCT_S34_L002_R1_001.unaln.bam 310191925 BAM unaligned CPTAC3 cf7231b4-66b9-4278-bef8-03bf63def1cf a5b63a2361f14ba268c1ad4e40ae6c53 { 'aliquot_tag': 'ALQ_fd51f65c', 'gdc_sample_type': 'Primary Tumor' } C3L-00881.miRNA-Seq.T.hg38 C3L-00881 PDA miRNA-Seq tumor CPT0017040010 226b9c1a-2f7b-49c7-92ff-c7d7b485d135_mirnaseq_gdc_realn.bam 342136754 BAM harmonized CPTAC3 1202a48e-468d-471f-9c95-99318507407d 81aa90063dc452ae9898f55558edeb43 { 'aliquot_tag': 'ALQ_fd51f65c', 'gdc_sample_type': 'Primary Tumor' } C3L-00881.RNA-Seq.chimeric.T.hg38 C3L-00881 PDA RNA-Seq tumor CPT0017040010 276223b0-8c8c-444a-a721-3ef8b9d9b9e6.rna_seq.chimeric.gdc_realn.bam 148038164 BAM chimeric harmonized CPTAC3 5e79c1cc-4bed-40ff-8fda-f5badb3f1a3c 21f8bf457c94aa587d9903c2d8a6700e { 'aliquot_tag': 'ALQ_fd51f65c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00881.RNA-Seq.genomic.T.hg38 C3L-00881 PDA RNA-Seq tumor CPT0017040010 276223b0-8c8c-444a-a721-3ef8b9d9b9e6.rna_seq.genomic.gdc_realn.bam 8446089318 BAM genomic harmonized CPTAC3 f0443efb-9c33-4cab-9965-0a15e79cedc7 db51b1a54cc23b2c4c68646b3d9c278b { 'aliquot_tag': 'ALQ_fd51f65c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00881.RNA-Seq.R1_L003.T C3L-00881 PDA RNA-Seq tumor CPT0017040010 170818_UNC32-K00270_0051_BHLCCHBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 3945688574 FASTQ R1_L003 unaligned CPTAC3 061532ad-114c-49c6-bb96-1c35ce0849e6 3e7ecde932c35908a7d749bfa30c355f { 'aliquot_tag': 'ALQ_fd51f65c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00881.RNA-Seq.R2_L003.T C3L-00881 PDA RNA-Seq tumor CPT0017040010 170818_UNC32-K00270_0051_BHLCCHBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 4400702461 FASTQ R2_L003 unaligned CPTAC3 0715a7e9-7782-4a70-893f-3b504345a2c7 d62486ff23a7cbafe28dc56ff49e8d5e { 'aliquot_tag': 'ALQ_fd51f65c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00881.RNA-Seq.genomic.T.hg38 C3L-00881 PDA RNA-Seq tumor CPT0017040010 276223b0-8c8c-444a-a721-3ef8b9d9b9e6.rna_seq.genomic.gdc_realn.bam 8446089318 BAM genomic harmonized CPTAC3 43dc629e-c53b-4bf0-b493-468f4289de00 db51b1a54cc23b2c4c68646b3d9c278b { 'aliquot_tag': 'ALQ_fd51f65c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00881.RNA-Seq.R1_L003.T C3L-00881 PDA RNA-Seq tumor CPT0017040010 170818_UNC32-K00270_0051_BHLCCHBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 3945688574 FASTQ R1_L003 unaligned CPTAC3 061532ad-114c-49c6-bb96-1c35ce0849e6 3e7ecde932c35908a7d749bfa30c355f { 'aliquot_tag': 'ALQ_fd51f65c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00881.RNA-Seq.R2_L003.T C3L-00881 PDA RNA-Seq tumor CPT0017040010 170818_UNC32-K00270_0051_BHLCCHBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 4400702461 FASTQ R2_L003 unaligned CPTAC3 0715a7e9-7782-4a70-893f-3b504345a2c7 d62486ff23a7cbafe28dc56ff49e8d5e { 'aliquot_tag': 'ALQ_fd51f65c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-00881.RNA-Seq.transcriptome.T.hg38 C3L-00881 PDA RNA-Seq tumor CPT0017040010 276223b0-8c8c-444a-a721-3ef8b9d9b9e6.rna_seq.transcriptome.gdc_realn.bam 10274496037 BAM transcriptome harmonized CPTAC3 5520129d-a834-45c6-885a-531b0bd49d57 5b4e00f153763a173b2edb483b5f2db4 { 'aliquot_tag': 'ALQ_fd51f65c', 'gdc_sample_type': 'Primary Tumor' } C3L-00881.Targeted.T C3L-00881 PDA Targeted Sequencing tumor CPT0017040007_1 CPT0017040007_1.CustomSelection.RP-1303.PDO-18786.bam 5041708878 BAM aligned CPTAC3 83a7c2e4-431d-425e-b052-c1373209d1bb d856aee3f726585861d057044c8770a5 { 'aliquot_tag': 'ALQ_d2079a9e', 'gdc_sample_type': 'Primary Tumor' } C3L-00881.Targeted.T.hg38 C3L-00881 PDA Targeted Sequencing tumor CPT0017040007_1 91520624-6be3-4d93-9269-6fce7a30d3c5_targetedsequencing_gdc_realn.bam 7149007745 BAM harmonized CPTAC3 fdcbaa06-a8c3-47da-be7d-28ba600a156b 73cd662d1a76807ca341984a12ed2bd8 { 'aliquot_tag': 'ALQ_d2079a9e', 'gdc_sample_type': 'Primary Tumor' } @@ -4018,11 +4492,11 @@ C3L-00885.MethArray.Green.T C3L-00885 PDA Methylation Array tumor CPT0064720010 C3L-00885.MethArray.Red.T C3L-00885 PDA Methylation Array tumor CPT0064720010 202184900104_R04C01_Red.idat 13676256 IDAT Red NA CPTAC3 83349bd6-5a59-493c-9048-e593015ebb15 6a2ea1545682b2df33347eb8b10b7921 { 'aliquot_tag': 'ALQ_543920c0', 'gdc_sample_type': 'Primary Tumor' } C3L-00885.miRNA-Seq.T C3L-00885 PDA miRNA-Seq tumor CPT0064720007 181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L001_R1_001.unaln.bam 246438084 BAM unaligned CPTAC3 abc2d05b-8c01-49be-bbf0-711c6318eb61 a5a9202330906a6b5780fc1e0cf2a29b { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor' } C3L-00885.miRNA-Seq.T.hg38 C3L-00885 PDA miRNA-Seq tumor CPT0064720007 dbb49abe-c651-419b-8df2-19bc9609c21c_mirnaseq_gdc_realn.bam 270064748 BAM harmonized CPTAC3 6f3b209e-f4d2-4801-8c96-73266c57397a 63c67826baeb2deac52a9cef7ecd60af { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor' } -C3L-00885.RNA-Seq.chimeric.T.hg38 C3L-00885 PDA RNA-Seq tumor CPT0064720007 68efa763-2fbd-4846-87e7-05554062c147.rna_seq.chimeric.gdc_realn.bam 29617740 BAM chimeric harmonized CPTAC3 b4bd7458-2377-4132-968f-5b6c9319c168 5269d49062d60d2fe761a258eef17a8a { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor' } -C3L-00885.RNA-Seq.genomic.T.hg38 C3L-00885 PDA RNA-Seq tumor CPT0064720007 68efa763-2fbd-4846-87e7-05554062c147.rna_seq.genomic.gdc_realn.bam 8447436791 BAM genomic harmonized CPTAC3 08b35111-c037-489c-b050-baaffa2f6615 6d01d48545a867d29211db74a112e099 { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor' } -C3L-00885.RNA-Seq.R1_L003.T C3L-00885 PDA RNA-Seq tumor CPT0064720007 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4089473425 FASTQ R1_L003 unaligned CPTAC3 53c1e06a-8602-4a75-934c-c08b309cf189 3bec29bf77773fb31b9e8a398eed8fb3 { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor' } -C3L-00885.RNA-Seq.R2_L003.T C3L-00885 PDA RNA-Seq tumor CPT0064720007 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4338399311 FASTQ R2_L003 unaligned CPTAC3 b232ae8e-de8d-4846-96d6-e62606971408 754be7379ca59c530ae7aba4c33a0838 { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor' } -C3L-00885.RNA-Seq.transcriptome.T.hg38 C3L-00885 PDA RNA-Seq tumor CPT0064720007 68efa763-2fbd-4846-87e7-05554062c147.rna_seq.transcriptome.gdc_realn.bam 9933995781 BAM transcriptome harmonized CPTAC3 5e96d8fb-2818-4620-9ee5-a65d281227f6 f20246ce0060ccd92a6773eec84c0caa { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor' } +C3L-00885.RNA-Seq.chimeric.T.hg38 C3L-00885 PDA RNA-Seq tumor CPT0064720007 ad7bd7bb-a4d8-419f-ab6e-ed6e23dedb51.rna_seq.chimeric.gdc_realn.bam 29607524 BAM chimeric harmonized CPTAC3 6f8b5f9f-7779-4143-8a4e-bc760559886b 2e656617207f72916f3f7fb1d349587c { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor' } +C3L-00885.RNA-Seq.genomic.T.hg38 C3L-00885 PDA RNA-Seq tumor CPT0064720007 ad7bd7bb-a4d8-419f-ab6e-ed6e23dedb51.rna_seq.genomic.gdc_realn.bam 8448476141 BAM genomic harmonized CPTAC3 86f19d86-4cd6-4a50-9019-1e805f4e1b45 d589065282da2b0db8e3a6aec92a824b { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor' } +C3L-00885.RNA-Seq.R1_L003.T C3L-00885 PDA RNA-Seq tumor CPT0064720007 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4089473425 FASTQ R1_L003 unaligned CPTAC3 53c1e06a-8602-4a75-934c-c08b309cf189 3bec29bf77773fb31b9e8a398eed8fb3 { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00885.RNA-Seq.R2_L003.T C3L-00885 PDA RNA-Seq tumor CPT0064720007 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4338399311 FASTQ R2_L003 unaligned CPTAC3 b232ae8e-de8d-4846-96d6-e62606971408 754be7379ca59c530ae7aba4c33a0838 { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00885.RNA-Seq.transcriptome.T.hg38 C3L-00885 PDA RNA-Seq tumor CPT0064720007 ad7bd7bb-a4d8-419f-ab6e-ed6e23dedb51.rna_seq.transcriptome.gdc_realn.bam 11254935820 BAM transcriptome harmonized CPTAC3 536f4528-1827-49fd-9659-ba42bab808f3 a41b146a60ab9e4d003cbf7ff5fc0061 { 'aliquot_tag': 'ALQ_d3468422', 'gdc_sample_type': 'Primary Tumor' } C3L-00885.Targeted.T C3L-00885 PDA Targeted Sequencing tumor CPT0064720010 CPT0064720010.CustomSelection.RP-1303.PDO-18786.bam 4970271541 BAM aligned CPTAC3 54c80f64-c223-414d-9309-2261c4a7b2c9 1167b3f1d007d783b5410fa89af7c3d5 { 'aliquot_tag': 'ALQ_543920c0', 'gdc_sample_type': 'Primary Tumor' } C3L-00885.Targeted.T.hg38 C3L-00885 PDA Targeted Sequencing tumor CPT0064720010 d98f794d-a36a-4c2b-8f82-9d4302f04e06_targetedsequencing_gdc_realn.bam 6824881507 BAM harmonized CPTAC3 7f53aa4a-3792-40fe-bb64-31a614e52214 85359de51960c058d716b68c3f202e00 { 'aliquot_tag': 'ALQ_543920c0', 'gdc_sample_type': 'Primary Tumor' } C3L-00885.WGS.N C3L-00885 PDA WGS blood_normal CPT0066680002 CPT0066680002.WholeGenome.RP-1303.bam 67598193267 BAM aligned CPTAC3 958b74e7-04be-4dc2-9689-2c2d98e0f9ae ab0d6c785707c0ebcbf90b602c0e191b { 'aliquot_tag': 'ALQ_b55faa80', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4043,12 +4517,12 @@ C3L-00893.miRNA-Seq.T C3L-00893 LUAD miRNA-Seq tumor CPT0083100006 181012_UNC32- C3L-00893.miRNA-Seq.T.hg38 C3L-00893 LUAD miRNA-Seq tumor CPT0083100006 bc3063e0-2ca9-44e1-858f-13fb74d8dfcf_mirnaseq_gdc_realn.bam 243932470 BAM harmonized CPTAC3 4acd9725-90c1-42e7-b611-c4e3c79e1467 9d660dab6485f5d08544f4657cf8d4d7 { 'aliquot_tag': 'ALQ_d8f52875', 'gdc_sample_type': 'Primary Tumor' } C3L-00893.RNA-Seq.chimeric.A.hg38 C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 1998d605-e58d-481b-9bde-8c7b2bd3c894.rna_seq.chimeric.gdc_realn.bam 112918676 BAM chimeric harmonized CPTAC3 77da31b2-8e19-4b61-b5ca-22ec7fa2b8c2 0b0e4c7a7c97eb6ba8c6d6f136f8c722 { 'aliquot_tag': 'ALQ_2d758eb5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00893.RNA-Seq.chimeric.T.hg38 C3L-00893 LUAD RNA-Seq tumor CPT0083100006 6995e888-1c8f-4121-96dd-94430fa2f73b.rna_seq.chimeric.gdc_realn.bam 56390524 BAM chimeric harmonized CPTAC3 7bd87519-87f1-4d89-a89c-f61440512af3 c8ed8a5a17de0871e51f0a28be3e0e85 { 'aliquot_tag': 'ALQ_d8f52875', 'gdc_sample_type': 'Primary Tumor' } -C3L-00893.RNA-Seq.genomic.A.hg38 C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 1998d605-e58d-481b-9bde-8c7b2bd3c894.rna_seq.genomic.gdc_realn.bam 9009882323 BAM genomic harmonized CPTAC3 5aa999ef-8d5e-4b26-9130-c7ec475cb78d b04e3b3376641c1fec692985b318d805 { 'aliquot_tag': 'ALQ_2d758eb5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00893.RNA-Seq.genomic.A.hg38 C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 1998d605-e58d-481b-9bde-8c7b2bd3c894.rna_seq.genomic.gdc_realn.bam 9009882323 BAM genomic harmonized CPTAC3 df9dea58-a308-4bbf-84d7-593da5713273 b04e3b3376641c1fec692985b318d805 { 'aliquot_tag': 'ALQ_2d758eb5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00893.RNA-Seq.genomic.T.hg38 C3L-00893 LUAD RNA-Seq tumor CPT0083100006 6995e888-1c8f-4121-96dd-94430fa2f73b.rna_seq.genomic.gdc_realn.bam 9907751154 BAM genomic harmonized CPTAC3 3f152507-ee28-442b-a91d-f4a57eab5fc6 e6ac581a9ddfb63aa7031cffb90aa257 { 'aliquot_tag': 'ALQ_d8f52875', 'gdc_sample_type': 'Primary Tumor' } -C3L-00893.RNA-Seq.R1_L002.T C3L-00893 LUAD RNA-Seq tumor CPT0083100006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 4240500605 FASTQ R1_L002 unaligned CPTAC3 eb47292d-387e-404a-a89d-c8fe3f247112 f068d342ab97a4fef0f33270de6b2ae0 { 'aliquot_tag': 'ALQ_d8f52875', 'gdc_sample_type': 'Primary Tumor' } -C3L-00893.RNA-Seq.R1_L005.A C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 171215_UNC32-K00270_0073_BHN3NFBBXX_GCCAAT_S17_L005_R1_001.fastq.gz 4401515590 FASTQ R1_L005 unaligned CPTAC3 48c56ccb-774e-4b7d-92cb-701679ef1560 4bfff3be82c03a71ed3cd697cdd116f7 { 'aliquot_tag': 'ALQ_2d758eb5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00893.RNA-Seq.R2_L002.T C3L-00893 LUAD RNA-Seq tumor CPT0083100006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4628651253 FASTQ R2_L002 unaligned CPTAC3 0b9baab7-6603-4477-9086-ae8e5deebad8 85678114bb1c49b70eeb85283da49d13 { 'aliquot_tag': 'ALQ_d8f52875', 'gdc_sample_type': 'Primary Tumor' } -C3L-00893.RNA-Seq.R2_L005.A C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 171215_UNC32-K00270_0073_BHN3NFBBXX_GCCAAT_S17_L005_R2_001.fastq.gz 4891480539 FASTQ R2_L005 unaligned CPTAC3 9c6b9a75-9890-48b5-9776-5ea84e1bf64d 1e1f56185072a2f2f07600538a387e4e { 'aliquot_tag': 'ALQ_2d758eb5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00893.RNA-Seq.R1_L002.T C3L-00893 LUAD RNA-Seq tumor CPT0083100006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 4240500605 FASTQ R1_L002 unaligned CPTAC3 eb47292d-387e-404a-a89d-c8fe3f247112 f068d342ab97a4fef0f33270de6b2ae0 { 'aliquot_tag': 'ALQ_d8f52875', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00893.RNA-Seq.R1_L005.A C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 171215_UNC32-K00270_0073_BHN3NFBBXX_GCCAAT_S17_L005_R1_001.fastq.gz 4401515590 FASTQ R1_L005 unaligned CPTAC3 48c56ccb-774e-4b7d-92cb-701679ef1560 4bfff3be82c03a71ed3cd697cdd116f7 { 'aliquot_tag': 'ALQ_2d758eb5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00893.RNA-Seq.R2_L002.T C3L-00893 LUAD RNA-Seq tumor CPT0083100006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4628651253 FASTQ R2_L002 unaligned CPTAC3 0b9baab7-6603-4477-9086-ae8e5deebad8 85678114bb1c49b70eeb85283da49d13 { 'aliquot_tag': 'ALQ_d8f52875', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00893.RNA-Seq.R2_L005.A C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 171215_UNC32-K00270_0073_BHN3NFBBXX_GCCAAT_S17_L005_R2_001.fastq.gz 4891480539 FASTQ R2_L005 unaligned CPTAC3 9c6b9a75-9890-48b5-9776-5ea84e1bf64d 1e1f56185072a2f2f07600538a387e4e { 'aliquot_tag': 'ALQ_2d758eb5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-00893.RNA-Seq.transcriptome.A.hg38 C3L-00893 LUAD RNA-Seq tissue_normal CPT0083140006 1998d605-e58d-481b-9bde-8c7b2bd3c894.rna_seq.transcriptome.gdc_realn.bam 11551227790 BAM transcriptome harmonized CPTAC3 94631469-19c9-4c8a-9700-6acab9d910cd 38e56cb5f6d1a29a8daf3ee7770181bd { 'aliquot_tag': 'ALQ_2d758eb5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00893.RNA-Seq.transcriptome.T.hg38 C3L-00893 LUAD RNA-Seq tumor CPT0083100006 6995e888-1c8f-4121-96dd-94430fa2f73b.rna_seq.transcriptome.gdc_realn.bam 9110919598 BAM transcriptome harmonized CPTAC3 130aca1e-f8e8-43ec-b72e-1eed796ebfc1 a50a00ef6190fc7fcebab82e5a4f9de0 { 'aliquot_tag': 'ALQ_d8f52875', 'gdc_sample_type': 'Primary Tumor' } C3L-00893.WGS.A C3L-00893 LUAD WGS tissue_normal CPT0083140009 CPT0083140009.WholeGenome.RP-1303.bam 61042797031 BAM aligned CPTAC3 e65030a9-be65-438e-a7f2-3906a97f24df 1475dd98fe6dbd0885f7f76190f50c2f { 'aliquot_tag': 'ALQ_bdca9324', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4064,17 +4538,21 @@ C3L-00893.WXS.N.hg38 C3L-00893 LUAD WXS blood_normal CPT0081760002 b686ec16-3532 C3L-00893.WXS.T C3L-00893 LUAD WXS tumor CPT0083100009 CPT0083100009.WholeExome.RP-1303.bam 35943652683 BAM aligned CPTAC3 c8470aba-106d-48f3-ad68-ad0d8fb8b98a b9377fc5395aa8ef197719da600303a3 { 'aliquot_tag': 'ALQ_484a35e4', 'gdc_sample_type': 'Primary Tumor' } C3L-00893.WXS.T.hg38 C3L-00893 LUAD WXS tumor CPT0083100009 0815b3bb-c9ee-4804-9f51-05014a8e5fbe_gdc_realn.bam 49062295437 BAM harmonized CPTAC3 a0116323-3a81-4e30-8fda-42ef92d0b231 f28e52952a79caab7b126a66958e8538 { 'aliquot_tag': 'ALQ_484a35e4', 'gdc_sample_type': 'Primary Tumor' } C3L-00898.DUP_132682c9.WGS.N C3L-00898 UCEC WGS blood_normal CPT0172430002_1 CPT0172430002_1.WholeGenome.RP-1303.bam 64392514987 BAM aligned CPTAC3 6017b281-cd44-48d1-a891-18acf653c42f e79104d93f778cf363f256afb3f02b9c { 'aliquot_tag': 'DUP_132682c9', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } +C3L-00898.DUP_132682c9.WGS.N.hg38 C3L-00898 UCEC WGS blood_normal CPT0172430002_1 33f58282-84bc-49ef-9122-2f2765e6b392_wgs_gdc_realn.bam 91754531420 BAM harmonized CPTAC3 65a09d23-1b89-492f-a17d-49fcc4365290 e1ef81d859d38a841ea0fb0d9415e051 { 'aliquot_tag': 'DUP_132682c9', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } C3L-00898.MethArray.Green.T C3L-00898 UCEC Methylation Array tumor CPT0172200011 203561450008_R04C01_Grn.idat 13676221 IDAT Green NA CPTAC3 edcd5bd3-6733-4bd0-844d-7bd54a7a88db c46cc948bad963d998dd9f159cbde71f { 'aliquot_tag': 'ALQ_b132f362', 'gdc_sample_type': 'Primary Tumor' } C3L-00898.MethArray.Red.T C3L-00898 UCEC Methylation Array tumor CPT0172200011 203561450008_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 e1c8ea38-78d3-4e36-aa29-fbc4d0ecd4bd 6d829bc3138787db9ae1b02cf72c1efb { 'aliquot_tag': 'ALQ_b132f362', 'gdc_sample_type': 'Primary Tumor' } C3L-00898.miRNA-Seq.T C3L-00898 UCEC miRNA-Seq tumor CPT0172200017 190508_UNC31-K00269_0215_BH7FYKBBXY_GACGAC_S41_L004_R1_001.unaln.bam 159712108 BAM unaligned CPTAC3 8edb4b1d-6cfd-4d0a-a1bf-02ba972e9834 0523213fdc88d85fb37ae5cfc97a3845 { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor' } C3L-00898.miRNA-Seq.T.hg38 C3L-00898 UCEC miRNA-Seq tumor CPT0172200017 01d9c7c1-092f-41d9-948a-f8f5851a70b1_mirnaseq_gdc_realn.bam 176218513 BAM harmonized CPTAC3 64346efc-9a69-45a9-a7a7-ca279f41ee66 86db75e9c0f5aa59892c173773f48d1e { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor' } -C3L-00898.RNA-Seq.chimeric.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 da1f4b3b-1abc-4d36-8683-cc3e69c7183c.rna_seq.chimeric.gdc_realn.bam 50701904 BAM chimeric harmonized CPTAC3 0c0dd3e2-f0e2-4a84-b8aa-0efa889579cb 5bb3e8effa5cad78a73e7ed9c3ba18cb { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor' } -C3L-00898.RNA-Seq.genomic.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 da1f4b3b-1abc-4d36-8683-cc3e69c7183c.rna_seq.genomic.gdc_realn.bam 10927997840 BAM genomic harmonized CPTAC3 7f092f05-4f67-4c5c-b78e-3c5ed54aefe9 e11c3f8528e54049ff52429c15864f8b { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor' } -C3L-00898.RNA-Seq.R1_L003.T C3L-00898 UCEC RNA-Seq tumor CPT0172200017 190604_UNC32-K00270_0177_AH7F5VBBXY_TATCGCAC-CTTAGTGT_S9_L003_R1_001.fastq.gz 5187718239 FASTQ R1_L003 unaligned CPTAC3 86f179d9-4c0f-4695-a5b9-9c1451edb1c1 7cf3b5c36c46219db87107dafce69e4c { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor' } -C3L-00898.RNA-Seq.R1_.T C3L-00898 UCEC RNA-Seq tumor CPT0172280001 20210723_P2_A9_WB7988-plate2_S9_R1_001.fastq.gz 3035053534 FASTQ R1_ unaligned CPTAC3 da4bde3d-79c5-4b90-a498-41d570e47e04 0832d21c91e851c140a9695052dfb3df { 'aliquot_tag': 'ALQ_985989e2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00898.RNA-Seq.R2_L003.T C3L-00898 UCEC RNA-Seq tumor CPT0172200017 190604_UNC32-K00270_0177_AH7F5VBBXY_TATCGCAC-CTTAGTGT_S9_L003_R2_001.fastq.gz 5955392897 FASTQ R2_L003 unaligned CPTAC3 29ec5877-3a1c-4187-b46b-02690a5bb354 b72dfe0e06ba49ae5260a1ed117d6cc5 { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor' } -C3L-00898.RNA-Seq.R2_.T C3L-00898 UCEC RNA-Seq tumor CPT0172280001 20210723_P2_A9_WB7988-plate2_S9_R2_001.fastq.gz 3108167528 FASTQ R2_ unaligned CPTAC3 6099cd8d-c4e9-4e6d-aeed-eff21a86bc4e 8ec904c537b10427dbea56d4818dbff4 { 'aliquot_tag': 'ALQ_985989e2', 'gdc_sample_type': 'Primary Tumor' } -C3L-00898.RNA-Seq.transcriptome.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 da1f4b3b-1abc-4d36-8683-cc3e69c7183c.rna_seq.transcriptome.gdc_realn.bam 10012738525 BAM transcriptome harmonized CPTAC3 2fe9f138-5dd8-41b0-912c-d51fe63d79cf f8afa282f9bc3be4fe46da9f35d6ac9f { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor' } +C3L-00898.RNA-Seq.chimeric.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 008cda25-bccf-4566-934f-4821a9c35168.rna_seq.chimeric.gdc_realn.bam 50684832 BAM chimeric harmonized CPTAC3 8a3105c3-2c08-4b84-8cef-745066bc6d61 b91f47fcb9209aa11300b6881f03af13 { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor' } +C3L-00898.RNA-Seq.chimeric.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172280001 ea47dde6-981a-4b46-8876-2af7c7f3747f.rna_seq.chimeric.gdc_realn.bam 118439231 BAM chimeric harmonized CPTAC3 c45e866a-6f8a-4eff-8657-7bf7cd1fcbcf cc71d9754f871022cdf897b8c3b2813d { 'aliquot_tag': 'ALQ_985989e2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00898.RNA-Seq.genomic.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 008cda25-bccf-4566-934f-4821a9c35168.rna_seq.genomic.gdc_realn.bam 10929379469 BAM genomic harmonized CPTAC3 dc959e48-0485-4f7f-8bea-10016dc9134e 67a2de3ebd24ec1f511f6844676a3bae { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor' } +C3L-00898.RNA-Seq.genomic.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172280001 ea47dde6-981a-4b46-8876-2af7c7f3747f.rna_seq.genomic.gdc_realn.bam 5512946461 BAM genomic harmonized CPTAC3 1a22c46d-cda1-4781-a002-73d0f0bd69e2 e79b0b1caa7d93deb38b6ce6d78020a7 { 'aliquot_tag': 'ALQ_985989e2', 'gdc_sample_type': 'Primary Tumor' } +C3L-00898.RNA-Seq.R1_L003.T C3L-00898 UCEC RNA-Seq tumor CPT0172200017 190604_UNC32-K00270_0177_AH7F5VBBXY_TATCGCAC-CTTAGTGT_S9_L003_R1_001.fastq.gz 5187718239 FASTQ R1_L003 unaligned CPTAC3 86f179d9-4c0f-4695-a5b9-9c1451edb1c1 7cf3b5c36c46219db87107dafce69e4c { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00898.RNA-Seq.R2_L003.T C3L-00898 UCEC RNA-Seq tumor CPT0172200017 190604_UNC32-K00270_0177_AH7F5VBBXY_TATCGCAC-CTTAGTGT_S9_L003_R2_001.fastq.gz 5955392897 FASTQ R2_L003 unaligned CPTAC3 29ec5877-3a1c-4187-b46b-02690a5bb354 b72dfe0e06ba49ae5260a1ed117d6cc5 { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00898.RNA-Seq.T C3L-00898 UCEC RNA-Seq tumor CPT0172280001 20210723_P2_A9_WB7988-plate2_S9_R1_001.fastq.gz 3035053534 FASTQ unaligned CPTAC3 da4bde3d-79c5-4b90-a498-41d570e47e04 0832d21c91e851c140a9695052dfb3df +C3L-00898.RNA-Seq.T C3L-00898 UCEC RNA-Seq tumor CPT0172280001 20210723_P2_A9_WB7988-plate2_S9_R2_001.fastq.gz 3108167528 FASTQ unaligned CPTAC3 6099cd8d-c4e9-4e6d-aeed-eff21a86bc4e 8ec904c537b10427dbea56d4818dbff4 +C3L-00898.RNA-Seq.transcriptome.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172200017 008cda25-bccf-4566-934f-4821a9c35168.rna_seq.transcriptome.gdc_realn.bam 11430072706 BAM transcriptome harmonized CPTAC3 9b202a97-8e71-4f96-ab4a-27e7f918b66c 5c454c70b1cf9a587979b5a240a82385 { 'aliquot_tag': 'ALQ_58515657', 'gdc_sample_type': 'Primary Tumor' } +C3L-00898.RNA-Seq.transcriptome.T.hg38 C3L-00898 UCEC RNA-Seq tumor CPT0172280001 ea47dde6-981a-4b46-8876-2af7c7f3747f.rna_seq.transcriptome.gdc_realn.bam 2811211711 BAM transcriptome harmonized CPTAC3 a2c55288-9c38-4b8b-9e90-2b54797ae8e0 8cd18d695f6c761374c64e3d1af1b282 { 'aliquot_tag': 'ALQ_985989e2', 'gdc_sample_type': 'Primary Tumor' } C3L-00898.WGS.N C3L-00898 UCEC WGS blood_normal CPT0172430002 CPT0172430002.WholeGenome.RP-1303.bam 21007836542 BAM aligned CPTAC3 25c292bc-6ae5-4331-90d5-6183ed40082d 6c69a49f68ed7507479825dbb98de57c { 'aliquot_tag': 'ALQ_a0d90a54', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00898.WGS.N.hg38 C3L-00898 UCEC WGS blood_normal CPT0172430002 7e0ba421-e26e-4869-8c26-a4e464b8c5a7_wgs_gdc_realn.bam 28837418601 BAM harmonized CPTAC3 7a0392d8-d5f1-4f26-9589-887b70da45c1 f2d7b48d7845d52f8bc31101033fbb4d { 'aliquot_tag': 'ALQ_a0d90a54', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00898.WGS.T C3L-00898 UCEC WGS tumor CPT0172200011 CPT0172200011.WholeGenome.RP-1303.bam 65983164800 BAM aligned CPTAC3 75c4b0fe-6834-47c7-88dc-1c6cb29100f9 7f8fbd13cef41bb2bf6573fff8eb3c1c { 'aliquot_tag': 'ALQ_b132f362', 'gdc_sample_type': 'Primary Tumor' } @@ -4095,10 +4573,10 @@ C3L-00902.RNA-Seq.chimeric.A.hg38 C3L-00902 CCRCC RNA-Seq tissue_normal CPT00633 C3L-00902.RNA-Seq.chimeric.T.hg38 C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 d8a05f1a-4f12-4136-b72e-4371d591b342.rna_seq.chimeric.gdc_realn.bam 38323353 BAM chimeric harmonized CPTAC3 0a9c9b1e-12b4-48e0-acff-dd9d1254c74b db378e7f8ef70ce66a572e5e20fde437 { 'aliquot_tag': 'ALQ_637e9996', 'gdc_sample_type': 'Primary Tumor' } C3L-00902.RNA-Seq.genomic.A.hg38 C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 0f6ac35a-de0b-4495-86f8-53840b2fba2b.rna_seq.genomic.gdc_realn.bam 6423979907 BAM genomic harmonized CPTAC3 d59247dd-094b-4760-8083-74cf9a0960d6 a6ede082cd167412f07ef1f87e34714b { 'aliquot_tag': 'ALQ_c717e19c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00902.RNA-Seq.genomic.T.hg38 C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 d8a05f1a-4f12-4136-b72e-4371d591b342.rna_seq.genomic.gdc_realn.bam 7883566909 BAM genomic harmonized CPTAC3 0ece7793-f954-4fe0-8dfa-bf1876db7d70 c35d6cffeb2240500e3f780c05383e4e { 'aliquot_tag': 'ALQ_637e9996', 'gdc_sample_type': 'Primary Tumor' } -C3L-00902.RNA-Seq.R1_L001.T C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3901575779 FASTQ R1_L001 unaligned CPTAC3 f005f1f9-a95f-4535-8188-f7193cb8ea9a d5d4d3c67970e6b2b27ba3128343b06f { 'aliquot_tag': 'ALQ_637e9996', 'gdc_sample_type': 'Primary Tumor' } -C3L-00902.RNA-Seq.R1_L004.A C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 171208_UNC32-K00270_0071_BHN7K5BBXX_CCGTCC_S42_L004_R1_001.fastq.gz 3385998758 FASTQ R1_L004 unaligned CPTAC3 03cff90c-7629-42c0-a7e2-177f233d0735 9abcc0b543ae0aabdf7e4c26136a8dc1 { 'aliquot_tag': 'ALQ_c717e19c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00902.RNA-Seq.R2_L001.T C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4198357331 FASTQ R2_L001 unaligned CPTAC3 8035f7d9-434d-419a-84b8-72f10ef4ef14 48ee3412b295994b74c3e92a0fafab6d { 'aliquot_tag': 'ALQ_637e9996', 'gdc_sample_type': 'Primary Tumor' } -C3L-00902.RNA-Seq.R2_L004.A C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 171208_UNC32-K00270_0071_BHN7K5BBXX_CCGTCC_S42_L004_R2_001.fastq.gz 3417553994 FASTQ R2_L004 unaligned CPTAC3 1a425e40-5d58-422a-8b44-3cc975f4153c 10c3ed47effb67a3b97dbc0ae05eac9d { 'aliquot_tag': 'ALQ_c717e19c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00902.RNA-Seq.R1_L001.T C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3901575779 FASTQ R1_L001 unaligned CPTAC3 f005f1f9-a95f-4535-8188-f7193cb8ea9a d5d4d3c67970e6b2b27ba3128343b06f { 'aliquot_tag': 'ALQ_637e9996', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00902.RNA-Seq.R1_L004.A C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 171208_UNC32-K00270_0071_BHN7K5BBXX_CCGTCC_S42_L004_R1_001.fastq.gz 3385998758 FASTQ R1_L004 unaligned CPTAC3 03cff90c-7629-42c0-a7e2-177f233d0735 9abcc0b543ae0aabdf7e4c26136a8dc1 { 'aliquot_tag': 'ALQ_c717e19c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00902.RNA-Seq.R2_L001.T C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4198357331 FASTQ R2_L001 unaligned CPTAC3 8035f7d9-434d-419a-84b8-72f10ef4ef14 48ee3412b295994b74c3e92a0fafab6d { 'aliquot_tag': 'ALQ_637e9996', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00902.RNA-Seq.R2_L004.A C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 171208_UNC32-K00270_0071_BHN7K5BBXX_CCGTCC_S42_L004_R2_001.fastq.gz 3417553994 FASTQ R2_L004 unaligned CPTAC3 1a425e40-5d58-422a-8b44-3cc975f4153c 10c3ed47effb67a3b97dbc0ae05eac9d { 'aliquot_tag': 'ALQ_c717e19c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-00902.RNA-Seq.transcriptome.A.hg38 C3L-00902 CCRCC RNA-Seq tissue_normal CPT0063330006 0f6ac35a-de0b-4495-86f8-53840b2fba2b.rna_seq.transcriptome.gdc_realn.bam 8491249659 BAM transcriptome harmonized CPTAC3 a79b45b9-6b08-4aff-9ae2-2981868de263 f0c502069c61c59ec8408581515777da { 'aliquot_tag': 'ALQ_c717e19c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00902.RNA-Seq.transcriptome.T.hg38 C3L-00902 CCRCC RNA-Seq tumor CPT0063320005 d8a05f1a-4f12-4136-b72e-4371d591b342.rna_seq.transcriptome.gdc_realn.bam 10895775979 BAM transcriptome harmonized CPTAC3 bc4cfafc-4a3f-40a1-a69d-5d7f095137ba 71dd46fa58087cc225db0ccecbb7058c { 'aliquot_tag': 'ALQ_637e9996', 'gdc_sample_type': 'Primary Tumor' } C3L-00902.WGS.A C3L-00902 CCRCC WGS tissue_normal CPT0063330009 CPT0063330009.WholeGenome.RP-1303.bam 63962526544 BAM aligned CPTAC3 a6f53632-4a1d-4ad7-855e-6e1eaf41b414 8ecb57077bd8991c50386d1ba8a261ef { 'aliquot_tag': 'ALQ_57a8fc0d', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4123,12 +4601,12 @@ C3L-00904.miRNA-Seq.T C3L-00904 LSCC miRNA-Seq tumor CPT0007740006 181012_UNC32- C3L-00904.miRNA-Seq.T.hg38 C3L-00904 LSCC miRNA-Seq tumor CPT0007740006 fc2abf5c-a300-4149-bfb8-bc4f6bc83f83_mirnaseq_gdc_realn.bam 256755826 BAM harmonized CPTAC3 b74b5168-6e97-4520-b9e7-c9564cbe6e54 4ed98bb7906e236e8a1f229f9e4086a8 { 'aliquot_tag': 'ALQ_dc86520e', 'gdc_sample_type': 'Primary Tumor' } C3L-00904.RNA-Seq.chimeric.A.hg38 C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 21466df8-e5a3-4100-b288-952d50a4f0af.rna_seq.chimeric.gdc_realn.bam 33820208 BAM chimeric harmonized CPTAC3 6ee74ee0-1251-4707-b58c-79ab783b547d 63ee042a93904e7322eaaa2a3a3af773 { 'aliquot_tag': 'ALQ_36f91cff', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00904.RNA-Seq.chimeric.T.hg38 C3L-00904 LSCC RNA-Seq tumor CPT0007740006 f07536ba-3ffb-4e8f-aa4c-ced459dda974.rna_seq.chimeric.gdc_realn.bam 41884459 BAM chimeric harmonized CPTAC3 b852209f-9607-42ab-b926-7f94f18feee2 a767502348120eba3de0357022d6172e { 'aliquot_tag': 'ALQ_dc86520e', 'gdc_sample_type': 'Primary Tumor' } -C3L-00904.RNA-Seq.genomic.A.hg38 C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 21466df8-e5a3-4100-b288-952d50a4f0af.rna_seq.genomic.gdc_realn.bam 9099740154 BAM genomic harmonized CPTAC3 4e57936c-2a98-4788-b789-2c22d1187f36 35448fd9e8662be0ca4d7bc112426a31 { 'aliquot_tag': 'ALQ_36f91cff', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00904.RNA-Seq.genomic.A.hg38 C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 21466df8-e5a3-4100-b288-952d50a4f0af.rna_seq.genomic.gdc_realn.bam 9099740154 BAM genomic harmonized CPTAC3 688e61b5-032e-45f4-af46-e97d1d6db861 35448fd9e8662be0ca4d7bc112426a31 { 'aliquot_tag': 'ALQ_36f91cff', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00904.RNA-Seq.genomic.T.hg38 C3L-00904 LSCC RNA-Seq tumor CPT0007740006 f07536ba-3ffb-4e8f-aa4c-ced459dda974.rna_seq.genomic.gdc_realn.bam 6120898859 BAM genomic harmonized CPTAC3 9051f596-46ea-42a5-a182-8503da184523 ca36dc5960183b12db02ff15a1bafebd { 'aliquot_tag': 'ALQ_dc86520e', 'gdc_sample_type': 'Primary Tumor' } -C3L-00904.RNA-Seq.R1_L003.T C3L-00904 LSCC RNA-Seq tumor CPT0007740006 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L003_R1_001.fastq.gz 2727114433 FASTQ R1_L003 unaligned CPTAC3 9dd16445-d61f-49cf-b3e9-4cb91784328d 8b0d04ea27a07635ef7bc23caaac9e73 { 'aliquot_tag': 'ALQ_dc86520e', 'gdc_sample_type': 'Primary Tumor' } -C3L-00904.RNA-Seq.R1_L004.A C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 3861950975 FASTQ R1_L004 unaligned CPTAC3 f9a108ec-99ab-458e-9584-4dbc4b407ef6 fcbb0db89c18c94cbea3410b15b97c4c { 'aliquot_tag': 'ALQ_36f91cff', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00904.RNA-Seq.R2_L003.T C3L-00904 LSCC RNA-Seq tumor CPT0007740006 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L003_R2_001.fastq.gz 2940186419 FASTQ R2_L003 unaligned CPTAC3 be15c178-1d81-4dc3-b11e-e8864691aac8 184492704686ab8c9c8c4bd0d6e06354 { 'aliquot_tag': 'ALQ_dc86520e', 'gdc_sample_type': 'Primary Tumor' } -C3L-00904.RNA-Seq.R2_L004.A C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4211599234 FASTQ R2_L004 unaligned CPTAC3 31cf3e68-7d16-4aa7-831e-b90a31a3c991 e99cccc9fa9fddcfe7e928a298e7e841 { 'aliquot_tag': 'ALQ_36f91cff', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00904.RNA-Seq.R1_L003.T C3L-00904 LSCC RNA-Seq tumor CPT0007740006 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L003_R1_001.fastq.gz 2727114433 FASTQ R1_L003 unaligned CPTAC3 9dd16445-d61f-49cf-b3e9-4cb91784328d 8b0d04ea27a07635ef7bc23caaac9e73 { 'aliquot_tag': 'ALQ_dc86520e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00904.RNA-Seq.R1_L004.A C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 3861950975 FASTQ R1_L004 unaligned CPTAC3 f9a108ec-99ab-458e-9584-4dbc4b407ef6 fcbb0db89c18c94cbea3410b15b97c4c { 'aliquot_tag': 'ALQ_36f91cff', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00904.RNA-Seq.R2_L003.T C3L-00904 LSCC RNA-Seq tumor CPT0007740006 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L003_R2_001.fastq.gz 2940186419 FASTQ R2_L003 unaligned CPTAC3 be15c178-1d81-4dc3-b11e-e8864691aac8 184492704686ab8c9c8c4bd0d6e06354 { 'aliquot_tag': 'ALQ_dc86520e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00904.RNA-Seq.R2_L004.A C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4211599234 FASTQ R2_L004 unaligned CPTAC3 31cf3e68-7d16-4aa7-831e-b90a31a3c991 e99cccc9fa9fddcfe7e928a298e7e841 { 'aliquot_tag': 'ALQ_36f91cff', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-00904.RNA-Seq.transcriptome.A.hg38 C3L-00904 LSCC RNA-Seq tissue_normal CPT0007760009 21466df8-e5a3-4100-b288-952d50a4f0af.rna_seq.transcriptome.gdc_realn.bam 10547513577 BAM transcriptome harmonized CPTAC3 26dbff98-9da7-4751-915a-16ec723a5a8f 169a6e5404c2de9377916444f0c6768b { 'aliquot_tag': 'ALQ_36f91cff', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00904.RNA-Seq.transcriptome.T.hg38 C3L-00904 LSCC RNA-Seq tumor CPT0007740006 f07536ba-3ffb-4e8f-aa4c-ced459dda974.rna_seq.transcriptome.gdc_realn.bam 7147040902 BAM transcriptome harmonized CPTAC3 1355f188-f019-4347-812b-c6c18ce1b0e5 8daf2a6d63da284c2799796819d7cf5d { 'aliquot_tag': 'ALQ_dc86520e', 'gdc_sample_type': 'Primary Tumor' } C3L-00904.WGS.A C3L-00904 LSCC WGS tissue_normal CPT0007760006 CPT0007760006.WholeGenome.RP-1303.bam 53190749844 BAM aligned CPTAC3 fffe6c73-7d0b-4600-9a90-2e92ffe2653e 0161e445308c13df6a5e37749ff784dd { 'aliquot_tag': 'ALQ_a646016e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4148,12 +4626,15 @@ C3L-00905.MethArray.Red.T C3L-00905 UCEC Methylation Array tumor CPT0063380009 2 C3L-00905.miRNA-Seq.T C3L-00905 UCEC miRNA-Seq tumor CPT0063380006 180924_UNC31-K00269_0154_AHWTMLBBXX_CCGTCC_S15_L003_R1_001.unaln.bam 176942130 BAM unaligned CPTAC3 2c13ec78-1664-4361-80c4-c5ab987b3fc3 1e33be868fc5f8db2a7eb6d09bcdb854 { 'aliquot_tag': 'ALQ_b0c7d08d', 'gdc_sample_type': 'Primary Tumor' } C3L-00905.miRNA-Seq.T.hg38 C3L-00905 UCEC miRNA-Seq tumor CPT0063380006 e3a9cb39-7876-43e0-a669-66479a9c979b_mirnaseq_gdc_realn.bam 192164908 BAM harmonized CPTAC3 25b5df8f-16ae-40ab-ade1-d6f5faf037b8 d4f7e13b575f09f25b371b2356522cfc { 'aliquot_tag': 'ALQ_b0c7d08d', 'gdc_sample_type': 'Primary Tumor' } C3L-00905.RNA-Seq.chimeric.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0063380006 a7f6758e-0ead-4d1a-bd39-17c6596ee5fe.rna_seq.chimeric.gdc_realn.bam 35656142 BAM chimeric harmonized CPTAC3 ddea5f5b-d102-4d1e-88ae-b3bcd13e718d 13faa286d880d2661a29be6a75dca02e { 'aliquot_tag': 'ALQ_b0c7d08d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00905.RNA-Seq.genomic.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0063380006 a7f6758e-0ead-4d1a-bd39-17c6596ee5fe.rna_seq.genomic.gdc_realn.bam 9415295543 BAM genomic harmonized CPTAC3 6fa15fa9-daa2-4558-950f-a08153ecddee 05386e284f1cf2b823568ba2fbf67b53 { 'aliquot_tag': 'ALQ_b0c7d08d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00905.RNA-Seq.R1_L001.T C3L-00905 UCEC RNA-Seq tumor CPT0063380006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 4353715474 FASTQ R1_L001 unaligned CPTAC3 f8d21c9d-a65c-4aba-9cae-71eadbe611ff 3b04d0003a8e2d2e9c6cd16880d6a1d9 { 'aliquot_tag': 'ALQ_b0c7d08d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00905.RNA-Seq.R1_.T C3L-00905 UCEC RNA-Seq tumor CPT0349790001 20210714_P1_E8_WB7988_plate1_S56_R1_001.fastq.gz 7819556652 FASTQ R1_ unaligned CPTAC3 5a30bf74-cc23-4321-9d8a-ae2c550cda4c e98dd564429aceb5e8b0d5c46bc4e018 { 'aliquot_tag': 'ALQ_578a4a7e', 'gdc_sample_type': 'Primary Tumor' } -C3L-00905.RNA-Seq.R2_L001.T C3L-00905 UCEC RNA-Seq tumor CPT0063380006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 4698026762 FASTQ R2_L001 unaligned CPTAC3 b84dc177-6c03-40d2-ae16-83bb9e772349 7cca988f91f0effbc11250c8ea6d5115 { 'aliquot_tag': 'ALQ_b0c7d08d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00905.RNA-Seq.R2_.T C3L-00905 UCEC RNA-Seq tumor CPT0349790001 20210714_P1_E8_WB7988_plate1_S56_R2_001.fastq.gz 8127817898 FASTQ R2_ unaligned CPTAC3 da43598b-38df-4f50-815b-de5cea1e0172 23b5829f23c3c611f0a83a842580d28d { 'aliquot_tag': 'ALQ_578a4a7e', 'gdc_sample_type': 'Primary Tumor' } +C3L-00905.RNA-Seq.chimeric.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0349790001 d311ad49-8e5a-4f9f-b587-1773b9332346.rna_seq.chimeric.gdc_realn.bam 233099082 BAM chimeric harmonized CPTAC3 a200218e-a911-41eb-ada8-40ccb25fcabe 0e1f0d84d95c1de847c3e2bf784a5480 { 'aliquot_tag': 'ALQ_578a4a7e', 'gdc_sample_type': 'Primary Tumor' } +C3L-00905.RNA-Seq.genomic.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0063380006 a7f6758e-0ead-4d1a-bd39-17c6596ee5fe.rna_seq.genomic.gdc_realn.bam 9415295543 BAM genomic harmonized CPTAC3 9d918c73-afd0-4ed6-8545-9803bd9cc2da 05386e284f1cf2b823568ba2fbf67b53 { 'aliquot_tag': 'ALQ_b0c7d08d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00905.RNA-Seq.genomic.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0349790001 d311ad49-8e5a-4f9f-b587-1773b9332346.rna_seq.genomic.gdc_realn.bam 12312818817 BAM genomic harmonized CPTAC3 5118e854-6106-40d1-ba51-6707c87a2ff2 d13832c01bde08aff4f9c35d8b85aa62 { 'aliquot_tag': 'ALQ_578a4a7e', 'gdc_sample_type': 'Primary Tumor' } +C3L-00905.RNA-Seq.R1_L001.T C3L-00905 UCEC RNA-Seq tumor CPT0063380006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 4353715474 FASTQ R1_L001 unaligned CPTAC3 f8d21c9d-a65c-4aba-9cae-71eadbe611ff 3b04d0003a8e2d2e9c6cd16880d6a1d9 { 'aliquot_tag': 'ALQ_b0c7d08d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00905.RNA-Seq.R2_L001.T C3L-00905 UCEC RNA-Seq tumor CPT0063380006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 4698026762 FASTQ R2_L001 unaligned CPTAC3 b84dc177-6c03-40d2-ae16-83bb9e772349 7cca988f91f0effbc11250c8ea6d5115 { 'aliquot_tag': 'ALQ_b0c7d08d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00905.RNA-Seq.T C3L-00905 UCEC RNA-Seq tumor CPT0349790001 20210714_P1_E8_WB7988_plate1_S56_R1_001.fastq.gz 7819556652 FASTQ unaligned CPTAC3 5a30bf74-cc23-4321-9d8a-ae2c550cda4c e98dd564429aceb5e8b0d5c46bc4e018 +C3L-00905.RNA-Seq.T C3L-00905 UCEC RNA-Seq tumor CPT0349790001 20210714_P1_E8_WB7988_plate1_S56_R2_001.fastq.gz 8127817898 FASTQ unaligned CPTAC3 da43598b-38df-4f50-815b-de5cea1e0172 23b5829f23c3c611f0a83a842580d28d C3L-00905.RNA-Seq.transcriptome.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0063380006 a7f6758e-0ead-4d1a-bd39-17c6596ee5fe.rna_seq.transcriptome.gdc_realn.bam 12317201178 BAM transcriptome harmonized CPTAC3 1acfadcb-28d3-4a48-b3c5-f86abc5ecf5f b33cb13405ce54f72d6c540254d6f9ac { 'aliquot_tag': 'ALQ_b0c7d08d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00905.RNA-Seq.transcriptome.T.hg38 C3L-00905 UCEC RNA-Seq tumor CPT0349790001 d311ad49-8e5a-4f9f-b587-1773b9332346.rna_seq.transcriptome.gdc_realn.bam 7700146006 BAM transcriptome harmonized CPTAC3 3f8f94c8-ca1b-4a92-b08b-ded6169dfc1e 63b8493a2ba304f7cc2f01c75818555e { 'aliquot_tag': 'ALQ_578a4a7e', 'gdc_sample_type': 'Primary Tumor' } C3L-00905.WGS.N C3L-00905 UCEC WGS blood_normal CPT0065250002 CPT0065250002.WholeGenome.RP-1303.bam 85081215327 BAM aligned CPTAC3 f804af1b-448e-4337-8ede-071f7c20dec1 d0c1cc0f3d050e2e9704d811a167ec2d { 'aliquot_tag': 'ALQ_e7b636ba', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00905.WGS.N.hg38 C3L-00905 UCEC WGS blood_normal CPT0065250002 609e24b7-042b-4088-a100-b55d5f0beaf5_gdc_realn.bam 130867023487 BAM harmonized CPTAC3 8db9ff3a-558c-4fdb-88e7-310c92350b3b b1dae9b03045d133a510fb724ec6e5c5 { 'aliquot_tag': 'ALQ_e7b636ba', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00905.WGS.T C3L-00905 UCEC WGS tumor CPT0063380009 CPT0063380009.WholeGenome.RP-1303.bam 77862105677 BAM aligned CPTAC3 b6580310-d583-46dc-ae4a-ad324d67abd7 d1274c00f9b2aca0248bb89479b9321e { 'aliquot_tag': 'ALQ_2078cd1c', 'gdc_sample_type': 'Primary Tumor' } @@ -4165,16 +4646,16 @@ C3L-00905.WXS.T.hg38 C3L-00905 UCEC WXS tumor CPT0063380009 d678d221-9dbd-4e9f-8 C3L-00907.DUP_4800c7b3.miRNA-Seq.T C3L-00907 CCRCC miRNA-Seq tumor CPT0064390006 200526_UNC32-K00270_0248_BHH7WFBBXY_TGACCA_S46_L005_R1_001.unaln.bam 210415246 BAM unaligned CPTAC3 8e67a76b-8ab6-42e9-aa05-80c273d239fb 3553fa22fb259e75de8318f63fa8120e { 'aliquot_tag': 'DUP_4800c7b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00907.DUP_4800c7b3.miRNA-Seq.T.hg38 C3L-00907 CCRCC miRNA-Seq tumor CPT0064390006 35f9aacb-ffa9-4ec3-bbd7-e4e7f6087b73_mirnaseq_gdc_realn.bam 234059849 BAM harmonized CPTAC3 37d610e4-68c9-472b-9691-6a13bf1f6fe5 4baf645764070d0aaa2c1f3b7c7ab8eb { 'aliquot_tag': 'DUP_4800c7b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00907.DUP_4800c7b3.RNA-Seq.chimeric.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 caab8af2-cd19-4468-828a-be29af9cefe2.rna_seq.chimeric.gdc_realn.bam 159872582 BAM chimeric harmonized CPTAC3 a58fbc89-5abc-4991-82ae-55904834ab94 c0cc72f57cf391ce402b306a8c6dd3f4 { 'aliquot_tag': 'DUP_4800c7b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00907.DUP_4800c7b3.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 caab8af2-cd19-4468-828a-be29af9cefe2.rna_seq.genomic.gdc_realn.bam 6564599358 BAM genomic harmonized CPTAC3 3ab2cfa1-7f90-4013-9285-647a9bcaeff6 8b12f64e38a24dee6bd5c4f89c3a4ed4 { 'aliquot_tag': 'DUP_4800c7b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00907.DUP_4800c7b3.RNA-Seq.R1_L004.T C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 200518_UNC32-K00270_0247_AHH573BBXY_AAGTCCAA-TATGAGTA_S28_L004_R1_001.fastq.gz 2953592785 FASTQ R1_L004 unaligned CPTAC3 355dd7a7-51a6-45e8-994d-ab93fc4e99d7 606116e17c7f259a78022e253870d868 { 'aliquot_tag': 'DUP_4800c7b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00907.DUP_4800c7b3.RNA-Seq.R2_L004.T C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 200518_UNC32-K00270_0247_AHH573BBXY_AAGTCCAA-TATGAGTA_S28_L004_R2_001.fastq.gz 3482612086 FASTQ R2_L004 unaligned CPTAC3 d14ba0d0-db53-4b1a-8b2a-08d713dec9b2 455b041d2dfbd31acfd041986f77e413 { 'aliquot_tag': 'DUP_4800c7b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00907.DUP_4800c7b3.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 caab8af2-cd19-4468-828a-be29af9cefe2.rna_seq.genomic.gdc_realn.bam 6564599358 BAM genomic harmonized CPTAC3 bfb7339d-aa5c-4936-a8fa-92050d326e89 8b12f64e38a24dee6bd5c4f89c3a4ed4 { 'aliquot_tag': 'DUP_4800c7b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00907.DUP_4800c7b3.RNA-Seq.R1_L004.T C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 200518_UNC32-K00270_0247_AHH573BBXY_AAGTCCAA-TATGAGTA_S28_L004_R1_001.fastq.gz 2953592785 FASTQ R1_L004 unaligned CPTAC3 355dd7a7-51a6-45e8-994d-ab93fc4e99d7 606116e17c7f259a78022e253870d868 { 'aliquot_tag': 'DUP_4800c7b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3L-00907.DUP_4800c7b3.RNA-Seq.R2_L004.T C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 200518_UNC32-K00270_0247_AHH573BBXY_AAGTCCAA-TATGAGTA_S28_L004_R2_001.fastq.gz 3482612086 FASTQ R2_L004 unaligned CPTAC3 d14ba0d0-db53-4b1a-8b2a-08d713dec9b2 455b041d2dfbd31acfd041986f77e413 { 'aliquot_tag': 'DUP_4800c7b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3L-00907.DUP_4800c7b3.RNA-Seq.transcriptome.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064390006 caab8af2-cd19-4468-828a-be29af9cefe2.rna_seq.transcriptome.gdc_realn.bam 8188327581 BAM transcriptome harmonized CPTAC3 10edba28-0451-466a-bf85-9555f0f07efb 3d2eadccb52007ebd723f6745fe7ca8e { 'aliquot_tag': 'DUP_4800c7b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00907.DUP_7560ee03.miRNA-Seq.T C3L-00907 CCRCC miRNA-Seq tumor CPT0064380006 200526_UNC32-K00270_0248_BHH7WFBBXY_TTAGGC_S47_L005_R1_001.unaln.bam 191519127 BAM unaligned CPTAC3 9d07b5de-5ebb-4127-9dd5-9a8c7fc5df1c f5a6c5458a79c6d903f762380add573c { 'aliquot_tag': 'DUP_7560ee03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00907.DUP_7560ee03.miRNA-Seq.T.hg38 C3L-00907 CCRCC miRNA-Seq tumor CPT0064380006 9101a748-ac4f-4aa3-8abd-c6e4a3691619_mirnaseq_gdc_realn.bam 213798651 BAM harmonized CPTAC3 9816537d-3f5a-43a7-8e43-059f4f68d35a 1f9e4daf18948106d67bb08388d1b572 { 'aliquot_tag': 'DUP_7560ee03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00907.DUP_7560ee03.RNA-Seq.chimeric.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 64f818f1-06ff-4111-91ba-09612ab6e258.rna_seq.chimeric.gdc_realn.bam 94438029 BAM chimeric harmonized CPTAC3 52c36b7a-c3c9-489a-862d-e85c6482a31c 7819bf41e81720f650eb6308ad91e4b0 { 'aliquot_tag': 'DUP_7560ee03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00907.DUP_7560ee03.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 64f818f1-06ff-4111-91ba-09612ab6e258.rna_seq.genomic.gdc_realn.bam 8535126053 BAM genomic harmonized CPTAC3 f31fb85f-491b-4455-a279-2606bc3754ba 0f488a4f07905e84f0c86d2350b9b775 { 'aliquot_tag': 'DUP_7560ee03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00907.DUP_7560ee03.RNA-Seq.R1_L004.T C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 200518_UNC32-K00270_0247_AHH573BBXY_GGACTTGG-CGCAGACG_S30_L004_R1_001.fastq.gz 3901703095 FASTQ R1_L004 unaligned CPTAC3 26820d22-be01-42dd-a1a1-748d7932a7a8 caba787a84a06364298a07eda2b886c9 { 'aliquot_tag': 'DUP_7560ee03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-00907.DUP_7560ee03.RNA-Seq.R2_L004.T C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 200518_UNC32-K00270_0247_AHH573BBXY_GGACTTGG-CGCAGACG_S30_L004_R2_001.fastq.gz 4614033820 FASTQ R2_L004 unaligned CPTAC3 bdea7f13-83db-4fc4-93ff-f770fd4f0859 5d3ee7df4f3514b0bd4d281beb3ed2f7 { 'aliquot_tag': 'DUP_7560ee03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00907.DUP_7560ee03.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 64f818f1-06ff-4111-91ba-09612ab6e258.rna_seq.genomic.gdc_realn.bam 8535126053 BAM genomic harmonized CPTAC3 cb9423d8-22e7-423c-ab08-0d13d05f4507 0f488a4f07905e84f0c86d2350b9b775 { 'aliquot_tag': 'DUP_7560ee03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-00907.DUP_7560ee03.RNA-Seq.R1_L004.T C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 200518_UNC32-K00270_0247_AHH573BBXY_GGACTTGG-CGCAGACG_S30_L004_R1_001.fastq.gz 3901703095 FASTQ R1_L004 unaligned CPTAC3 26820d22-be01-42dd-a1a1-748d7932a7a8 caba787a84a06364298a07eda2b886c9 { 'aliquot_tag': 'DUP_7560ee03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3L-00907.DUP_7560ee03.RNA-Seq.R2_L004.T C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 200518_UNC32-K00270_0247_AHH573BBXY_GGACTTGG-CGCAGACG_S30_L004_R2_001.fastq.gz 4614033820 FASTQ R2_L004 unaligned CPTAC3 bdea7f13-83db-4fc4-93ff-f770fd4f0859 5d3ee7df4f3514b0bd4d281beb3ed2f7 { 'aliquot_tag': 'DUP_7560ee03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3L-00907.DUP_7560ee03.RNA-Seq.transcriptome.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064380006 64f818f1-06ff-4111-91ba-09612ab6e258.rna_seq.transcriptome.gdc_realn.bam 11884504071 BAM transcriptome harmonized CPTAC3 a2ea7b64-7cb5-4a08-8b58-666f8bf1170b 1b07c9bf516a50e902194a35043a444b { 'aliquot_tag': 'DUP_7560ee03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00907.DUP_d8bfda22.MethArray.Green.T C3L-00907 CCRCC Methylation Array tumor CPT0064390009 204367460011_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6da1c805-b648-4d6d-881c-f05953da1760 899bd7010562363fd8d1b0828ffa20ad { 'aliquot_tag': 'DUP_d8bfda22', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-00907.DUP_d8bfda22.MethArray.Red.T C3L-00907 CCRCC Methylation Array tumor CPT0064390009 204367460011_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 82484ee2-aadf-4c2c-8b92-5cb15a76c2c3 8e6deba29866e52e23ec0b7dbd0e1bbd { 'aliquot_tag': 'DUP_d8bfda22', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -4198,12 +4679,12 @@ C3L-00907.miRNA-Seq.T C3L-00907 CCRCC miRNA-Seq tumor CPT0064370009 181113_UNC31 C3L-00907.miRNA-Seq.T.hg38 C3L-00907 CCRCC miRNA-Seq tumor CPT0064370009 925ef109-71f3-481f-9ced-2381347c7acf_mirnaseq_gdc_realn.bam 217482390 BAM harmonized CPTAC3 e46a663f-66ee-4999-b00b-c6a80637e657 0d002596b826807586f23aa3bea8d19e { 'aliquot_tag': 'ALQ_678f6443', 'gdc_sample_type': 'Primary Tumor' } C3L-00907.RNA-Seq.chimeric.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 1a3728a3-8fd5-4286-a3ac-cca2f8401fcc.rna_seq.chimeric.gdc_realn.bam 68201596 BAM chimeric harmonized CPTAC3 ac6952a8-6c86-4b80-ab6f-02bc718abaaa c34695384e85e0c473d16f5c56c437be { 'aliquot_tag': 'ALQ_5815957a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00907.RNA-Seq.chimeric.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 96d1f63c-660f-46b0-94d7-47be15b7d707.rna_seq.chimeric.gdc_realn.bam 28869846 BAM chimeric harmonized CPTAC3 f525d3db-5657-4c2d-a54f-1f1938005a71 51e9bcf572a9d460937c46a72fa082f8 { 'aliquot_tag': 'ALQ_678f6443', 'gdc_sample_type': 'Primary Tumor' } -C3L-00907.RNA-Seq.genomic.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 1a3728a3-8fd5-4286-a3ac-cca2f8401fcc.rna_seq.genomic.gdc_realn.bam 7977871036 BAM genomic harmonized CPTAC3 f28216cf-6c94-4691-8ce9-e395f440e8fb bc83a72903f38f9e811542a63df5af86 { 'aliquot_tag': 'ALQ_5815957a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00907.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 96d1f63c-660f-46b0-94d7-47be15b7d707.rna_seq.genomic.gdc_realn.bam 7938993537 BAM genomic harmonized CPTAC3 ed96280d-22da-497d-b6e3-cf80d38512a1 71fe80d94bf973c356a87ba1499724b8 { 'aliquot_tag': 'ALQ_678f6443', 'gdc_sample_type': 'Primary Tumor' } -C3L-00907.RNA-Seq.R1_L005.T C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 170828_UNC31-K00269_0077_AHLF33BBXX_CGTACG_S19_L005_R1_001.fastq.gz 3806635927 FASTQ R1_L005 unaligned CPTAC3 feff905e-00f6-45d8-a067-6d887961203d ab9709335139fcdb2bf7bb6c1523b380 { 'aliquot_tag': 'ALQ_678f6443', 'gdc_sample_type': 'Primary Tumor' } -C3L-00907.RNA-Seq.R1_L006.A C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 171212_UNC31-K00269_0102_AHN5MMBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4116509305 FASTQ R1_L006 unaligned CPTAC3 91e9deed-abfa-4e77-b5d0-771da7e6042c 4ab19a6ec5ecb68b7ddb4310aa5dfd64 { 'aliquot_tag': 'ALQ_5815957a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00907.RNA-Seq.R2_L005.T C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 170828_UNC31-K00269_0077_AHLF33BBXX_CGTACG_S19_L005_R2_001.fastq.gz 4134224462 FASTQ R2_L005 unaligned CPTAC3 1ba5d8a7-958c-40af-958c-4d7c070debe4 00b0f359b42308f1f4fe23b44abc8dd3 { 'aliquot_tag': 'ALQ_678f6443', 'gdc_sample_type': 'Primary Tumor' } -C3L-00907.RNA-Seq.R2_L006.A C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 171212_UNC31-K00269_0102_AHN5MMBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4550943116 FASTQ R2_L006 unaligned CPTAC3 fb84b43b-fbda-42e2-a32a-9f031db8feff 3405b30fc9b9d748d43adfef6c94adfc { 'aliquot_tag': 'ALQ_5815957a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00907.RNA-Seq.genomic.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 1a3728a3-8fd5-4286-a3ac-cca2f8401fcc.rna_seq.genomic.gdc_realn.bam 7977871036 BAM genomic harmonized CPTAC3 10ca97a7-9252-45ec-b052-b485d660a8a5 bc83a72903f38f9e811542a63df5af86 { 'aliquot_tag': 'ALQ_5815957a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00907.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 96d1f63c-660f-46b0-94d7-47be15b7d707.rna_seq.genomic.gdc_realn.bam 7938993537 BAM genomic harmonized CPTAC3 7a09c5b9-3e7b-4ecc-80c2-0ed177908e7a 71fe80d94bf973c356a87ba1499724b8 { 'aliquot_tag': 'ALQ_678f6443', 'gdc_sample_type': 'Primary Tumor' } +C3L-00907.RNA-Seq.R1_L005.T C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 170828_UNC31-K00269_0077_AHLF33BBXX_CGTACG_S19_L005_R1_001.fastq.gz 3806635927 FASTQ R1_L005 unaligned CPTAC3 feff905e-00f6-45d8-a067-6d887961203d ab9709335139fcdb2bf7bb6c1523b380 { 'aliquot_tag': 'ALQ_678f6443', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00907.RNA-Seq.R1_L006.A C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 171212_UNC31-K00269_0102_AHN5MMBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4116509305 FASTQ R1_L006 unaligned CPTAC3 91e9deed-abfa-4e77-b5d0-771da7e6042c 4ab19a6ec5ecb68b7ddb4310aa5dfd64 { 'aliquot_tag': 'ALQ_5815957a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-00907.RNA-Seq.R2_L005.T C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 170828_UNC31-K00269_0077_AHLF33BBXX_CGTACG_S19_L005_R2_001.fastq.gz 4134224462 FASTQ R2_L005 unaligned CPTAC3 1ba5d8a7-958c-40af-958c-4d7c070debe4 00b0f359b42308f1f4fe23b44abc8dd3 { 'aliquot_tag': 'ALQ_678f6443', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-00907.RNA-Seq.R2_L006.A C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 171212_UNC31-K00269_0102_AHN5MMBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4550943116 FASTQ R2_L006 unaligned CPTAC3 fb84b43b-fbda-42e2-a32a-9f031db8feff 3405b30fc9b9d748d43adfef6c94adfc { 'aliquot_tag': 'ALQ_5815957a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3L-00907.RNA-Seq.transcriptome.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal CPT0064400006 1a3728a3-8fd5-4286-a3ac-cca2f8401fcc.rna_seq.transcriptome.gdc_realn.bam 10693311581 BAM transcriptome harmonized CPTAC3 29b23fdc-51a9-49b0-a335-613a8d46b86d 90cc1ed9c4b8df53d0ca48505d1f0f62 { 'aliquot_tag': 'ALQ_5815957a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00907.RNA-Seq.transcriptome.T.hg38 C3L-00907 CCRCC RNA-Seq tumor CPT0064370009 96d1f63c-660f-46b0-94d7-47be15b7d707.rna_seq.transcriptome.gdc_realn.bam 10885847771 BAM transcriptome harmonized CPTAC3 ef975ef0-8011-4c55-bc34-97f88b4a5248 dcdc1474825ef9bb40a9ed9f2a3d3680 { 'aliquot_tag': 'ALQ_678f6443', 'gdc_sample_type': 'Primary Tumor' } C3L-00907.WGS.A C3L-00907 CCRCC WGS tissue_normal CPT0064400009 CPT0064400009.WholeGenome.RP-1303.bam 50519355214 BAM aligned CPTAC3 fa85506d-33dc-4156-9e80-46997b4d3de7 e91cbd580f8b719ee439b2da79bc870c { 'aliquot_tag': 'ALQ_c8aa88eb', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4228,23 +4709,23 @@ C3L-00908.REP_9f5a3438.miRNA-Seq.T C3L-00908 CCRCC miRNA-Seq tumor CPT0086350009 C3L-00908.REP_9f5a3438.miRNA-Seq.T.hg38 C3L-00908 CCRCC miRNA-Seq tumor CPT0086350009 33c921ea-b743-4d32-9c56-875de6028c71_mirnaseq_gdc_realn.bam 179925405 BAM harmonized CPTAC3 35b76590-bc93-4d51-86cc-58ea39c678b1 d9bb5104e97c611b1218318f1e27ea16 { 'aliquot_tag': 'REP_9f5a3438', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3L-00908.REP_9f5a3438.RNA-Seq.chimeric.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.chimeric.gdc_realn.bam 45129040 BAM chimeric harmonized CPTAC3 a6b2589f-1f32-4752-87b9-ac13b6d33182 3c245f4afa68d0aed264b220dcfb34db { 'aliquot_tag': 'REP_9f5a3438', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3L-00908.REP_9f5a3438.RNA-Seq.genomic.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.genomic.gdc_realn.bam 9460036479 BAM genomic harmonized CPTAC3 efedb251-7150-41ca-a7c7-cff5d9a558b3 f3607f5b80b51e4568f518bf7e8991cf { 'aliquot_tag': 'REP_9f5a3438', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3L-00908.REP_9f5a3438.RNA-Seq.R1_L007.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R1_001.fastq.gz 4497335523 FASTQ R1_L007 unaligned CPTAC3 7b04f1ce-15c3-43d2-9286-7a6d1f15e302 c0eb97ce345891af6daf78e0298b2701 { 'aliquot_tag': 'REP_9f5a3438', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3L-00908.REP_9f5a3438.RNA-Seq.R2_L007.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R2_001.fastq.gz 4812306259 FASTQ R2_L007 unaligned CPTAC3 4ba00e47-13e7-4f56-b8c4-77d73ba76363 13c2d5dd46289aeb707903a147444417 { 'aliquot_tag': 'REP_9f5a3438', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3L-00908.REP_9f5a3438.RNA-Seq.R1_L007.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R1_001.fastq.gz 4497335523 FASTQ R1_L007 unaligned CPTAC3 7b04f1ce-15c3-43d2-9286-7a6d1f15e302 c0eb97ce345891af6daf78e0298b2701 { 'aliquot_tag': 'REP_9f5a3438', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R1', 'lane': 'L007' } +C3L-00908.REP_9f5a3438.RNA-Seq.R2_L007.T C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 180606_UNC32-K00270_0097_AHVCKFBBXX_TAGCTT_S25_L007_R2_001.fastq.gz 4812306259 FASTQ R2_L007 unaligned CPTAC3 4ba00e47-13e7-4f56-b8c4-77d73ba76363 13c2d5dd46289aeb707903a147444417 { 'aliquot_tag': 'REP_9f5a3438', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R2', 'lane': 'L007' } C3L-00908.REP_9f5a3438.RNA-Seq.transcriptome.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086350009 6f0598b2-b16b-435d-86b4-d08fc01d25de.rna_seq.transcriptome.gdc_realn.bam 13467018138 BAM transcriptome harmonized CPTAC3 a45675b4-d9dd-434e-bf60-1f1ba99bb365 0ef4e483876a03dc88f363f98b2ed0a0 { 'aliquot_tag': 'REP_9f5a3438', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3L-00908.REP_fe529a9.MethArray.Green.T C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed' } -C3L-00908.REP_fe529a9.MethArray.Red.T C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed' } -C3L-00908.REP_fe529a9.WGS.T C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM aligned CPTAC3 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed' } -C3L-00908.REP_fe529a9.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM harmonized CPTAC3 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed' } -C3L-00908.REP_fe529a9.WXS.T C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM aligned CPTAC3 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed' } -C3L-00908.REP_fe529a9.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM harmonized CPTAC3 c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Additional DNA Distribution - Additional aliquot;Duplicate item: Replacement DNA Distribution - original aliquot failed' } +C3L-00908.REP_fe529a9.MethArray.Green.T C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 3013b22a-439d-4497-ac9f-bf75810cd989 af7026f23787ddba6aa7f2ed6f5405aa { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot' } +C3L-00908.REP_fe529a9.MethArray.Red.T C3L-00908 CCRCC Methylation Array tumor CPT0086350006 203027390040_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 55c95b2e-0d7a-4c86-b2a8-5ee825a8512b 834f64fee4447329482d2358dbf4145a { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot' } +C3L-00908.REP_fe529a9.WGS.T C3L-00908 CCRCC WGS tumor CPT0086350006 CPT0086350006.WholeGenome.RP-1303.bam 55596248074 BAM aligned CPTAC3 745fe17e-baa3-4d88-bda4-e79e2ddbbda8 de15f508c7474a1e2b97f56a29e16528 { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot' } +C3L-00908.REP_fe529a9.WGS.T.hg38 C3L-00908 CCRCC WGS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wgs_gdc_realn.bam 81274335964 BAM harmonized CPTAC3 1da02c03-85b9-4039-8111-845895d9c3e1 f0a7e773469b0f20ea0b97c5a5448f3b { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot' } +C3L-00908.REP_fe529a9.WXS.T C3L-00908 CCRCC WXS tumor CPT0086350006 CPT0086350006.WholeExome.RP-1303.bam 27152855614 BAM aligned CPTAC3 09a2ea3e-93ba-499d-86b8-7e4ca639de66 527bd417b2de02d4b46010f801d38318 { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot' } +C3L-00908.REP_fe529a9.WXS.T.hg38 C3L-00908 CCRCC WXS tumor CPT0086350006 bbc3e5fa-d872-4922-912a-bfc9acdb58bb_wxs_gdc_realn.bam 36474134197 BAM harmonized CPTAC3 c10f8658-5a5b-4417-b979-4612c5a593a9 2b7fb5096a83be473b6effe3c1e5dd7f { 'aliquot_tag': 'REP_fe529a9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed;Additional DNA Distribution - Additional aliquot' } C3L-00908.RNA-Seq.chimeric.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.chimeric.gdc_realn.bam 81729999 BAM chimeric harmonized CPTAC3 15e54e5d-8151-45de-bedf-5c5b377f8cd1 2dbd687ffb1b37045ce45d0aaac7a94a { 'aliquot_tag': 'ALQ_75257ac9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00908.RNA-Seq.chimeric.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.chimeric.gdc_realn.bam 41299237 BAM chimeric harmonized CPTAC3 27290952-fff8-42ed-a3aa-1876caa8dd40 0fde308c07c0790ad4c285ac0f4451ba { 'aliquot_tag': 'ALQ_48455379', 'gdc_sample_type': 'Primary Tumor' } -C3L-00908.RNA-Seq.genomic.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.genomic.gdc_realn.bam 6920830541 BAM genomic harmonized CPTAC3 975e2969-0301-42f0-9a89-fa9a2f0168c0 e8aebf888d077c9b4dc6a3e6aca0e56b { 'aliquot_tag': 'ALQ_75257ac9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00908.RNA-Seq.genomic.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.genomic.gdc_realn.bam 6920830541 BAM genomic harmonized CPTAC3 1358f298-f323-4428-ab6c-4c9c0d1a1c36 e8aebf888d077c9b4dc6a3e6aca0e56b { 'aliquot_tag': 'ALQ_75257ac9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00908.RNA-Seq.genomic.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.genomic.gdc_realn.bam 8713498273 BAM genomic harmonized CPTAC3 d6a6daab-f92b-4280-aef4-5754730368fd 403e5a66072f7c810ca03ffbb9afe13a { 'aliquot_tag': 'ALQ_48455379', 'gdc_sample_type': 'Primary Tumor' } -C3L-00908.RNA-Seq.R1_L003.A C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTCAA_S12_L003_R1_001.fastq.gz 3538178356 FASTQ R1_L003 unaligned CPTAC3 d7f5f1c4-4092-45ab-95f7-571f2aeb4b58 3be4f172a7798a029e44faabab7e5aec { 'aliquot_tag': 'ALQ_75257ac9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00908.RNA-Seq.R1_L006.T C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L006_R1_001.fastq.gz 4675518805 FASTQ R1_L006 unaligned CPTAC3 afd5ee0e-563c-4238-876a-a1f103037d5b 18912a5c516d47a67af05aebd310cb6b { 'aliquot_tag': 'ALQ_48455379', 'gdc_sample_type': 'Primary Tumor' } -C3L-00908.RNA-Seq.R2_L003.A C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTCAA_S12_L003_R2_001.fastq.gz 3745507489 FASTQ R2_L003 unaligned CPTAC3 d69e6d8c-0db1-43d0-817e-71306ba1e0b6 f9a0af7c4a60f562e361e9d71128b85f { 'aliquot_tag': 'ALQ_75257ac9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00908.RNA-Seq.R2_L006.T C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L006_R2_001.fastq.gz 5005750144 FASTQ R2_L006 unaligned CPTAC3 0e355758-ba51-4012-8001-df2c458e6742 2266ab7b0e9619b251438371ca3c2118 { 'aliquot_tag': 'ALQ_48455379', 'gdc_sample_type': 'Primary Tumor' } +C3L-00908.RNA-Seq.R1_L003.A C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTCAA_S12_L003_R1_001.fastq.gz 3538178356 FASTQ R1_L003 unaligned CPTAC3 d7f5f1c4-4092-45ab-95f7-571f2aeb4b58 3be4f172a7798a029e44faabab7e5aec { 'aliquot_tag': 'ALQ_75257ac9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-00908.RNA-Seq.R1_L006.T C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L006_R1_001.fastq.gz 4675518805 FASTQ R1_L006 unaligned CPTAC3 afd5ee0e-563c-4238-876a-a1f103037d5b 18912a5c516d47a67af05aebd310cb6b { 'aliquot_tag': 'ALQ_48455379', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00908.RNA-Seq.R2_L003.A C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTCAA_S12_L003_R2_001.fastq.gz 3745507489 FASTQ R2_L003 unaligned CPTAC3 d69e6d8c-0db1-43d0-817e-71306ba1e0b6 f9a0af7c4a60f562e361e9d71128b85f { 'aliquot_tag': 'ALQ_75257ac9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-00908.RNA-Seq.R2_L006.T C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L006_R2_001.fastq.gz 5005750144 FASTQ R2_L006 unaligned CPTAC3 0e355758-ba51-4012-8001-df2c458e6742 2266ab7b0e9619b251438371ca3c2118 { 'aliquot_tag': 'ALQ_48455379', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-00908.RNA-Seq.transcriptome.A.hg38 C3L-00908 CCRCC RNA-Seq tissue_normal CPT0086370006 022396e9-30da-4818-8706-61b721f1bfa6.rna_seq.transcriptome.gdc_realn.bam 8745017212 BAM transcriptome harmonized CPTAC3 d74134a6-43a0-4785-a963-2aa9076ae796 53bbccb224fcbd94a1ec370d6cee8cf8 { 'aliquot_tag': 'ALQ_75257ac9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00908.RNA-Seq.transcriptome.T.hg38 C3L-00908 CCRCC RNA-Seq tumor CPT0086360006 45aac17f-748d-4e45-9868-a92c7a080a65.rna_seq.transcriptome.gdc_realn.bam 10307359310 BAM transcriptome harmonized CPTAC3 50c099e3-f37b-4e62-bf61-9f3730126961 96e93b8900ad9d3dc3ec5f7bdf06768b { 'aliquot_tag': 'ALQ_48455379', 'gdc_sample_type': 'Primary Tumor' } C3L-00908.WGS.A C3L-00908 CCRCC WGS tissue_normal CPT0086370009 CPT0086370009.WholeGenome.RP-1303.bam 55614160288 BAM aligned CPTAC3 cfc1cfce-10fe-4132-8a7d-f0c17f9769dc d53670a31e44a2b09fffee26ada8728e { 'aliquot_tag': 'ALQ_e59a6758', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4269,12 +4750,12 @@ C3L-00910.miRNA-Seq.T C3L-00910 CCRCC miRNA-Seq tumor CPT0007860006 181012_UNC32 C3L-00910.miRNA-Seq.T.hg38 C3L-00910 CCRCC miRNA-Seq tumor CPT0007860006 c1279fe0-477e-4cd6-a74b-8bafe92fa5ac_mirnaseq_gdc_realn.bam 220116694 BAM harmonized CPTAC3 9d91442b-8805-4b04-8ccf-17a01e1ee523 82dfb686ef393a717826d2d0e211699a { 'aliquot_tag': 'ALQ_5710b3bb', 'gdc_sample_type': 'Primary Tumor' } C3L-00910.RNA-Seq.chimeric.A.hg38 C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 ff3e7799-5284-49a6-9d8b-3456a60ec890.rna_seq.chimeric.gdc_realn.bam 95399916 BAM chimeric harmonized CPTAC3 78d37770-7c21-478c-a132-29966cc2f161 3f1c82364c1c1f7002ad013ef80a868b { 'aliquot_tag': 'ALQ_6a709a0b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00910.RNA-Seq.chimeric.T.hg38 C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 a175ceab-b7cc-4def-b7dc-32be5051526b.rna_seq.chimeric.gdc_realn.bam 83131684 BAM chimeric harmonized CPTAC3 d77172d2-cf31-4c33-865a-d089e8bb0fa5 d28a80d58082e0ad9c9c2c750a13eaa4 { 'aliquot_tag': 'ALQ_5710b3bb', 'gdc_sample_type': 'Primary Tumor' } -C3L-00910.RNA-Seq.genomic.A.hg38 C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 ff3e7799-5284-49a6-9d8b-3456a60ec890.rna_seq.genomic.gdc_realn.bam 7908935065 BAM genomic harmonized CPTAC3 d1911103-1fca-4f47-9cc3-b83d5a74ecad 690643d8fe0fe6faa196d1c70ed2b42e { 'aliquot_tag': 'ALQ_6a709a0b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00910.RNA-Seq.genomic.T.hg38 C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 a175ceab-b7cc-4def-b7dc-32be5051526b.rna_seq.genomic.gdc_realn.bam 10518278293 BAM genomic harmonized CPTAC3 7fad6bed-5ccb-4d94-99ca-1e9fdd9a4502 dff01841d5195bea110c3d8da7843c54 { 'aliquot_tag': 'ALQ_5710b3bb', 'gdc_sample_type': 'Primary Tumor' } -C3L-00910.RNA-Seq.R1_L002.T C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L002_R1_001.fastq.gz 5135403695 FASTQ R1_L002 unaligned CPTAC3 0a8bfa04-4555-4df3-9b8c-6b889b56e524 4b4d3f2f9ceffcedbeb21b9278fa5521 { 'aliquot_tag': 'ALQ_5710b3bb', 'gdc_sample_type': 'Primary Tumor' } -C3L-00910.RNA-Seq.R1_L004.A C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGAAA_S43_L004_R1_001.fastq.gz 4001058274 FASTQ R1_L004 unaligned CPTAC3 3730b063-50d4-4a07-aecc-38fa8c8cb9d7 87ee7cc241a1ae8d6989f2fc8d4465a7 { 'aliquot_tag': 'ALQ_6a709a0b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00910.RNA-Seq.R2_L002.T C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L002_R2_001.fastq.gz 5573420983 FASTQ R2_L002 unaligned CPTAC3 9fcf3a6b-36d5-487e-b884-ed8fd820cef1 b2b252b6f29be49cc56c00116848e710 { 'aliquot_tag': 'ALQ_5710b3bb', 'gdc_sample_type': 'Primary Tumor' } -C3L-00910.RNA-Seq.R2_L004.A C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGAAA_S43_L004_R2_001.fastq.gz 4005216188 FASTQ R2_L004 unaligned CPTAC3 d2dc565a-5504-487a-bcf8-76a09155b440 5867f39f14427ba58e0f5146f1e4aaab { 'aliquot_tag': 'ALQ_6a709a0b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00910.RNA-Seq.genomic.A.hg38 C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 ff3e7799-5284-49a6-9d8b-3456a60ec890.rna_seq.genomic.gdc_realn.bam 7908935065 BAM genomic harmonized CPTAC3 0e814afa-6f21-491a-a029-ae264e9bc6d7 690643d8fe0fe6faa196d1c70ed2b42e { 'aliquot_tag': 'ALQ_6a709a0b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00910.RNA-Seq.genomic.T.hg38 C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 a175ceab-b7cc-4def-b7dc-32be5051526b.rna_seq.genomic.gdc_realn.bam 10518278293 BAM genomic harmonized CPTAC3 f005ebf1-b806-4ec5-ae90-6cdd4a4499c2 dff01841d5195bea110c3d8da7843c54 { 'aliquot_tag': 'ALQ_5710b3bb', 'gdc_sample_type': 'Primary Tumor' } +C3L-00910.RNA-Seq.R1_L002.T C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L002_R1_001.fastq.gz 5135403695 FASTQ R1_L002 unaligned CPTAC3 0a8bfa04-4555-4df3-9b8c-6b889b56e524 4b4d3f2f9ceffcedbeb21b9278fa5521 { 'aliquot_tag': 'ALQ_5710b3bb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00910.RNA-Seq.R1_L004.A C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGAAA_S43_L004_R1_001.fastq.gz 4001058274 FASTQ R1_L004 unaligned CPTAC3 3730b063-50d4-4a07-aecc-38fa8c8cb9d7 87ee7cc241a1ae8d6989f2fc8d4465a7 { 'aliquot_tag': 'ALQ_6a709a0b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00910.RNA-Seq.R2_L002.T C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L002_R2_001.fastq.gz 5573420983 FASTQ R2_L002 unaligned CPTAC3 9fcf3a6b-36d5-487e-b884-ed8fd820cef1 b2b252b6f29be49cc56c00116848e710 { 'aliquot_tag': 'ALQ_5710b3bb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00910.RNA-Seq.R2_L004.A C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 171208_UNC32-K00270_0071_BHN7K5BBXX_GTGAAA_S43_L004_R2_001.fastq.gz 4005216188 FASTQ R2_L004 unaligned CPTAC3 d2dc565a-5504-487a-bcf8-76a09155b440 5867f39f14427ba58e0f5146f1e4aaab { 'aliquot_tag': 'ALQ_6a709a0b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-00910.RNA-Seq.transcriptome.A.hg38 C3L-00910 CCRCC RNA-Seq tissue_normal CPT0007870006 ff3e7799-5284-49a6-9d8b-3456a60ec890.rna_seq.transcriptome.gdc_realn.bam 9815764250 BAM transcriptome harmonized CPTAC3 7144c502-5db2-47d5-b185-6eac8513758e b2c8cf5ee63de27c5084fe79f3b7244d { 'aliquot_tag': 'ALQ_6a709a0b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00910.RNA-Seq.transcriptome.T.hg38 C3L-00910 CCRCC RNA-Seq tumor CPT0007860006 a175ceab-b7cc-4def-b7dc-32be5051526b.rna_seq.transcriptome.gdc_realn.bam 14513257300 BAM transcriptome harmonized CPTAC3 a37bcda9-2d50-4030-89f7-b2a496979ff7 1f35bc3fc8776b2fa125e09ae340aff0 { 'aliquot_tag': 'ALQ_5710b3bb', 'gdc_sample_type': 'Primary Tumor' } C3L-00910.WGS.A C3L-00910 CCRCC WGS tissue_normal CPT0007870009 CPT0007870009.WholeGenome.RP-1303.bam 60782507590 BAM aligned CPTAC3 78ec418d-7830-4f16-8159-04d973c573b8 fb0e39710ace281073c4d0b46e3ec50f { 'aliquot_tag': 'ALQ_facf879a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4299,12 +4780,12 @@ C3L-00913.miRNA-Seq.T C3L-00913 LUAD miRNA-Seq tumor CPT0106110006 181108_UNC31- C3L-00913.miRNA-Seq.T.hg38 C3L-00913 LUAD miRNA-Seq tumor CPT0106110006 f9312019-a312-4c83-b179-ce0a3bac8624_mirnaseq_gdc_realn.bam 197483472 BAM harmonized CPTAC3 aa7890fa-113f-4b8c-a989-c2434e60991b 551ba297c9a37d6fcb87f1868d5d820b { 'aliquot_tag': 'ALQ_73332194', 'gdc_sample_type': 'Primary Tumor' } C3L-00913.RNA-Seq.chimeric.A.hg38 C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 33109d30-4b90-46eb-8963-f544bee2bd9e.rna_seq.chimeric.gdc_realn.bam 94964374 BAM chimeric harmonized CPTAC3 37bfaf8a-7416-4385-b40f-88fb06c45f87 5bfd8db8624594bfc866dbfdb92fac43 { 'aliquot_tag': 'ALQ_4e530824', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00913.RNA-Seq.chimeric.T.hg38 C3L-00913 LUAD RNA-Seq tumor CPT0106110006 c4b2c7c0-823a-413e-9ae5-e9c80a7844d4.rna_seq.chimeric.gdc_realn.bam 35924762 BAM chimeric harmonized CPTAC3 974cb715-8c29-4e2f-a4c8-19beb2bf43e1 80b79bf9bc19c237b302bc951f088851 { 'aliquot_tag': 'ALQ_73332194', 'gdc_sample_type': 'Primary Tumor' } -C3L-00913.RNA-Seq.genomic.A.hg38 C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 33109d30-4b90-46eb-8963-f544bee2bd9e.rna_seq.genomic.gdc_realn.bam 8270843262 BAM genomic harmonized CPTAC3 2ee0ac63-cc2e-4cd5-8a2d-fe745740d082 0798306b74c27ee46509527f1e0a16ed { 'aliquot_tag': 'ALQ_4e530824', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00913.RNA-Seq.genomic.A.hg38 C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 33109d30-4b90-46eb-8963-f544bee2bd9e.rna_seq.genomic.gdc_realn.bam 8270843262 BAM genomic harmonized CPTAC3 e1dff40e-5128-4d74-a0a6-715ea7967504 0798306b74c27ee46509527f1e0a16ed { 'aliquot_tag': 'ALQ_4e530824', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00913.RNA-Seq.genomic.T.hg38 C3L-00913 LUAD RNA-Seq tumor CPT0106110006 c4b2c7c0-823a-413e-9ae5-e9c80a7844d4.rna_seq.genomic.gdc_realn.bam 8283900773 BAM genomic harmonized CPTAC3 f37213f9-6f72-4684-84c8-487854b332d6 4762e17fc08cf653e20e5f6120e0694c { 'aliquot_tag': 'ALQ_73332194', 'gdc_sample_type': 'Primary Tumor' } -C3L-00913.RNA-Seq.R1_L003.A C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L003_R1_001.fastq.gz 4198775387 FASTQ R1_L003 unaligned CPTAC3 ca975c52-262a-4714-acaa-fc16d9c42fe8 8c5a0684028d94b51b317d40f0ddb225 { 'aliquot_tag': 'ALQ_4e530824', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00913.RNA-Seq.R1_L005.T C3L-00913 LUAD RNA-Seq tumor CPT0106110006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L005_R1_001.fastq.gz 3513974649 FASTQ R1_L005 unaligned CPTAC3 8bd0cbdd-4252-47f9-9abe-b62369d87078 755591d5785a65391bb22e66cfdfa0d5 { 'aliquot_tag': 'ALQ_73332194', 'gdc_sample_type': 'Primary Tumor' } -C3L-00913.RNA-Seq.R2_L003.A C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L003_R2_001.fastq.gz 4651665309 FASTQ R2_L003 unaligned CPTAC3 b5734aa7-9f6b-43f4-b1db-2bae2c858440 17a73b0372abaa7477c7b37882313cf1 { 'aliquot_tag': 'ALQ_4e530824', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00913.RNA-Seq.R2_L005.T C3L-00913 LUAD RNA-Seq tumor CPT0106110006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L005_R2_001.fastq.gz 3932200443 FASTQ R2_L005 unaligned CPTAC3 768234aa-5b23-49f2-a44e-c51d7fad1ba8 c74d3e24b12310885a72a84660bece7f { 'aliquot_tag': 'ALQ_73332194', 'gdc_sample_type': 'Primary Tumor' } +C3L-00913.RNA-Seq.R1_L003.A C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L003_R1_001.fastq.gz 4198775387 FASTQ R1_L003 unaligned CPTAC3 ca975c52-262a-4714-acaa-fc16d9c42fe8 8c5a0684028d94b51b317d40f0ddb225 { 'aliquot_tag': 'ALQ_4e530824', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-00913.RNA-Seq.R1_L005.T C3L-00913 LUAD RNA-Seq tumor CPT0106110006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L005_R1_001.fastq.gz 3513974649 FASTQ R1_L005 unaligned CPTAC3 8bd0cbdd-4252-47f9-9abe-b62369d87078 755591d5785a65391bb22e66cfdfa0d5 { 'aliquot_tag': 'ALQ_73332194', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-00913.RNA-Seq.R2_L003.A C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L003_R2_001.fastq.gz 4651665309 FASTQ R2_L003 unaligned CPTAC3 b5734aa7-9f6b-43f4-b1db-2bae2c858440 17a73b0372abaa7477c7b37882313cf1 { 'aliquot_tag': 'ALQ_4e530824', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-00913.RNA-Seq.R2_L005.T C3L-00913 LUAD RNA-Seq tumor CPT0106110006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L005_R2_001.fastq.gz 3932200443 FASTQ R2_L005 unaligned CPTAC3 768234aa-5b23-49f2-a44e-c51d7fad1ba8 c74d3e24b12310885a72a84660bece7f { 'aliquot_tag': 'ALQ_73332194', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-00913.RNA-Seq.transcriptome.A.hg38 C3L-00913 LUAD RNA-Seq tissue_normal CPT0106100006 33109d30-4b90-46eb-8963-f544bee2bd9e.rna_seq.transcriptome.gdc_realn.bam 10624508966 BAM transcriptome harmonized CPTAC3 53a4c409-846c-4d4e-bf25-c70065f47a5f 13c60f454f1e24492ab38fd4c6cbf4ed { 'aliquot_tag': 'ALQ_4e530824', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00913.RNA-Seq.transcriptome.T.hg38 C3L-00913 LUAD RNA-Seq tumor CPT0106110006 c4b2c7c0-823a-413e-9ae5-e9c80a7844d4.rna_seq.transcriptome.gdc_realn.bam 10418999370 BAM transcriptome harmonized CPTAC3 02459e8f-2abe-412d-affa-46cb665ab3d1 9ba500efdb66ff7fd34fbab3d686f155 { 'aliquot_tag': 'ALQ_73332194', 'gdc_sample_type': 'Primary Tumor' } C3L-00913.WGS.A C3L-00913 LUAD WGS tissue_normal CPT0106100008 CPT0106100008.WholeGenome.RP-1303.bam 57899224769 BAM aligned CPTAC3 9c1f4a13-9395-4399-9cf6-e3cef8c7996b 03e5d24386042b1cb59efe4899d09cb5 { 'aliquot_tag': 'ALQ_a9eb2523', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4329,12 +4810,12 @@ C3L-00917.miRNA-Seq.T C3L-00917 CCRCC miRNA-Seq tumor CPT0023690009 181113_UNC31 C3L-00917.miRNA-Seq.T.hg38 C3L-00917 CCRCC miRNA-Seq tumor CPT0023690009 12d298f2-5f27-4c87-888c-2ee9f6d11062_mirnaseq_gdc_realn.bam 202177662 BAM harmonized CPTAC3 6a475c9c-bfd8-4ba9-a21f-507e6a3b344c b55852efddb82e9d1cb023a1f99a53c2 { 'aliquot_tag': 'ALQ_c99f7be5', 'gdc_sample_type': 'Primary Tumor' } C3L-00917.RNA-Seq.chimeric.A.hg38 C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 d416256e-6d61-442d-b82d-e66decf8122d.rna_seq.chimeric.gdc_realn.bam 59891779 BAM chimeric harmonized CPTAC3 eeda21d1-e364-41fb-aef5-09cbea506248 6f4dda04fc3a7cdad73c79bbad29157e { 'aliquot_tag': 'ALQ_a20cfe10', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00917.RNA-Seq.chimeric.T.hg38 C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 c7838400-9200-44a8-a17b-929dd86733a5.rna_seq.chimeric.gdc_realn.bam 50591479 BAM chimeric harmonized CPTAC3 650e7638-3a47-45a8-9f38-b9203d3d8a87 4a0778659f4f350cd82e6bb07d9089c2 { 'aliquot_tag': 'ALQ_c99f7be5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00917.RNA-Seq.genomic.A.hg38 C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 d416256e-6d61-442d-b82d-e66decf8122d.rna_seq.genomic.gdc_realn.bam 7589080173 BAM genomic harmonized CPTAC3 4c506f35-f9c6-4d87-b9e2-b200f6a88822 aca73a1c18d87797a1c1821647276cef { 'aliquot_tag': 'ALQ_a20cfe10', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00917.RNA-Seq.genomic.T.hg38 C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 c7838400-9200-44a8-a17b-929dd86733a5.rna_seq.genomic.gdc_realn.bam 6841282923 BAM genomic harmonized CPTAC3 f8fa10d5-4bc2-4554-b214-b5e2291138f1 7b27edad141e7cda9b99788a8008891a { 'aliquot_tag': 'ALQ_c99f7be5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00917.RNA-Seq.R1_L006.A C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 171212_UNC31-K00269_0102_AHN5MMBBXX_TGACCA_S21_L006_R1_001.fastq.gz 3859648612 FASTQ R1_L006 unaligned CPTAC3 22c8d9e9-33e6-4d4b-beaa-b4f1dfcc58ae 4b975fd02e5a59ea986772428e19ccb9 { 'aliquot_tag': 'ALQ_a20cfe10', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00917.RNA-Seq.R1_L008.T C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L008_R1_001.fastq.gz 3118278132 FASTQ R1_L008 unaligned CPTAC3 1ed2a869-4360-4d55-bd87-c57a892bc3f3 00deeae1442e1c427fec97538998270d { 'aliquot_tag': 'ALQ_c99f7be5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00917.RNA-Seq.R2_L006.A C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 171212_UNC31-K00269_0102_AHN5MMBBXX_TGACCA_S21_L006_R2_001.fastq.gz 4263783129 FASTQ R2_L006 unaligned CPTAC3 c146ca79-3096-425f-ad59-0c5fe7967560 2a95304b5d3139787fdebf0def84b20a { 'aliquot_tag': 'ALQ_a20cfe10', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00917.RNA-Seq.R2_L008.T C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L008_R2_001.fastq.gz 3416970953 FASTQ R2_L008 unaligned CPTAC3 03e6f81f-9409-49d1-ba62-339159496523 2c695063e80464d6b3d8fb1fd2da49b3 { 'aliquot_tag': 'ALQ_c99f7be5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00917.RNA-Seq.genomic.A.hg38 C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 d416256e-6d61-442d-b82d-e66decf8122d.rna_seq.genomic.gdc_realn.bam 7589080173 BAM genomic harmonized CPTAC3 21105199-9c22-40b7-bbe2-2afdaff7df6a aca73a1c18d87797a1c1821647276cef { 'aliquot_tag': 'ALQ_a20cfe10', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00917.RNA-Seq.genomic.T.hg38 C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 c7838400-9200-44a8-a17b-929dd86733a5.rna_seq.genomic.gdc_realn.bam 6841282923 BAM genomic harmonized CPTAC3 8e4c6f57-04d1-463d-b956-84b9af13b922 7b27edad141e7cda9b99788a8008891a { 'aliquot_tag': 'ALQ_c99f7be5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00917.RNA-Seq.R1_L006.A C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 171212_UNC31-K00269_0102_AHN5MMBBXX_TGACCA_S21_L006_R1_001.fastq.gz 3859648612 FASTQ R1_L006 unaligned CPTAC3 22c8d9e9-33e6-4d4b-beaa-b4f1dfcc58ae 4b975fd02e5a59ea986772428e19ccb9 { 'aliquot_tag': 'ALQ_a20cfe10', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-00917.RNA-Seq.R1_L008.T C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L008_R1_001.fastq.gz 3118278132 FASTQ R1_L008 unaligned CPTAC3 1ed2a869-4360-4d55-bd87-c57a892bc3f3 00deeae1442e1c427fec97538998270d { 'aliquot_tag': 'ALQ_c99f7be5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00917.RNA-Seq.R2_L006.A C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 171212_UNC31-K00269_0102_AHN5MMBBXX_TGACCA_S21_L006_R2_001.fastq.gz 4263783129 FASTQ R2_L006 unaligned CPTAC3 c146ca79-3096-425f-ad59-0c5fe7967560 2a95304b5d3139787fdebf0def84b20a { 'aliquot_tag': 'ALQ_a20cfe10', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-00917.RNA-Seq.R2_L008.T C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 170823_UNC31-K00269_0075_AHLCW5BBXX_GCCAAT_S12_L008_R2_001.fastq.gz 3416970953 FASTQ R2_L008 unaligned CPTAC3 03e6f81f-9409-49d1-ba62-339159496523 2c695063e80464d6b3d8fb1fd2da49b3 { 'aliquot_tag': 'ALQ_c99f7be5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-00917.RNA-Seq.transcriptome.A.hg38 C3L-00917 CCRCC RNA-Seq tissue_normal CPT0023710006 d416256e-6d61-442d-b82d-e66decf8122d.rna_seq.transcriptome.gdc_realn.bam 9865971585 BAM transcriptome harmonized CPTAC3 9cbc32b2-07c1-4b3a-9384-41542a6cfd8a 663abbb3afebbf4280d5367c299e7500 { 'aliquot_tag': 'ALQ_a20cfe10', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00917.RNA-Seq.transcriptome.T.hg38 C3L-00917 CCRCC RNA-Seq tumor CPT0023690009 c7838400-9200-44a8-a17b-929dd86733a5.rna_seq.transcriptome.gdc_realn.bam 8285211558 BAM transcriptome harmonized CPTAC3 b90bc3f2-aca8-4167-aa9d-6b0e4cfc8083 7b410e0ea3cea322bfdb996e2ef7a0bd { 'aliquot_tag': 'ALQ_c99f7be5', 'gdc_sample_type': 'Primary Tumor' } C3L-00917.WGS.A C3L-00917 CCRCC WGS tissue_normal CPT0023710009 CPT0023710009.WholeGenome.RP-1303.bam 64447326962 BAM aligned CPTAC3 5cbc0f98-0158-473e-94a4-fa97231d503a ffd51e3a65e29578bfda0abecf411e5c { 'aliquot_tag': 'ALQ_32b3e381', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4354,9 +4835,9 @@ C3L-00918.MethArray.Red.T C3L-00918 UCEC Methylation Array tumor CPT0063790006 2 C3L-00918.miRNA-Seq.T C3L-00918 UCEC miRNA-Seq tumor CPT0063790009 180924_UNC31-K00269_0154_AHWTMLBBXX_CGTACG_S9_L003_R1_001.unaln.bam 160340862 BAM unaligned CPTAC3 1da37b31-2a59-420e-b06f-e1d2f968f0f3 5614070dfbd976de1be45760feb33591 { 'aliquot_tag': 'ALQ_8689a6ba', 'gdc_sample_type': 'Primary Tumor' } C3L-00918.miRNA-Seq.T.hg38 C3L-00918 UCEC miRNA-Seq tumor CPT0063790009 37e43244-d726-4ce9-b0e3-b7f3491f30b1_mirnaseq_gdc_realn.bam 176368410 BAM harmonized CPTAC3 73dc29a5-63ea-4b2e-88ba-8e62702b9c4b 35f7cdae02eb2d1b9f3370b42bfe3e1a { 'aliquot_tag': 'ALQ_8689a6ba', 'gdc_sample_type': 'Primary Tumor' } C3L-00918.RNA-Seq.chimeric.T.hg38 C3L-00918 UCEC RNA-Seq tumor CPT0063790009 4b85e420-b151-4231-9894-8a60eceb0929.rna_seq.chimeric.gdc_realn.bam 27457584 BAM chimeric harmonized CPTAC3 d3fed3a7-c320-4efc-ad5e-6a72fd6c3607 8a6e4b0e51ff2754b7f7839ab7313301 { 'aliquot_tag': 'ALQ_8689a6ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-00918.RNA-Seq.genomic.T.hg38 C3L-00918 UCEC RNA-Seq tumor CPT0063790009 4b85e420-b151-4231-9894-8a60eceb0929.rna_seq.genomic.gdc_realn.bam 8762291204 BAM genomic harmonized CPTAC3 52b16700-6b03-4904-abce-a6cd5dce180b 1580e516534f1ac43b833e12f2d39568 { 'aliquot_tag': 'ALQ_8689a6ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-00918.RNA-Seq.R1_L008.T C3L-00918 UCEC RNA-Seq tumor CPT0063790009 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L008_R1_001.fastq.gz 4242039089 FASTQ R1_L008 unaligned CPTAC3 3d47af04-fe23-4f4d-8ec2-66420dd82fef 1a8666ab9cfac332927285822c8d2098 { 'aliquot_tag': 'ALQ_8689a6ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-00918.RNA-Seq.R2_L008.T C3L-00918 UCEC RNA-Seq tumor CPT0063790009 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L008_R2_001.fastq.gz 4500612852 FASTQ R2_L008 unaligned CPTAC3 83a66e82-d19f-4dcd-bf04-33397c2160a9 feb25e2ab02df40ea16d2708d0086b64 { 'aliquot_tag': 'ALQ_8689a6ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-00918.RNA-Seq.genomic.T.hg38 C3L-00918 UCEC RNA-Seq tumor CPT0063790009 4b85e420-b151-4231-9894-8a60eceb0929.rna_seq.genomic.gdc_realn.bam 8762291204 BAM genomic harmonized CPTAC3 d30d9a23-8eb8-4b4b-9599-da8bd63d182a 1580e516534f1ac43b833e12f2d39568 { 'aliquot_tag': 'ALQ_8689a6ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-00918.RNA-Seq.R1_L008.T C3L-00918 UCEC RNA-Seq tumor CPT0063790009 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L008_R1_001.fastq.gz 4242039089 FASTQ R1_L008 unaligned CPTAC3 3d47af04-fe23-4f4d-8ec2-66420dd82fef 1a8666ab9cfac332927285822c8d2098 { 'aliquot_tag': 'ALQ_8689a6ba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00918.RNA-Seq.R2_L008.T C3L-00918 UCEC RNA-Seq tumor CPT0063790009 170828_UNC31-K00269_0077_AHLF33BBXX_CTTGTA_S7_L008_R2_001.fastq.gz 4500612852 FASTQ R2_L008 unaligned CPTAC3 83a66e82-d19f-4dcd-bf04-33397c2160a9 feb25e2ab02df40ea16d2708d0086b64 { 'aliquot_tag': 'ALQ_8689a6ba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-00918.RNA-Seq.transcriptome.T.hg38 C3L-00918 UCEC RNA-Seq tumor CPT0063790009 4b85e420-b151-4231-9894-8a60eceb0929.rna_seq.transcriptome.gdc_realn.bam 11919775610 BAM transcriptome harmonized CPTAC3 d955648a-ee6d-4bda-89f7-0c9fc4044875 624f5d3242d8622b99fecf3ecaa92567 { 'aliquot_tag': 'ALQ_8689a6ba', 'gdc_sample_type': 'Primary Tumor' } C3L-00918.WGS.N C3L-00918 UCEC WGS blood_normal CPT0065320002 CPT0065320002.WholeGenome.RP-1303.bam 78838790842 BAM aligned CPTAC3 c3ee861e-3b26-4c51-9575-01f0f1973a6a 39067f406b2e2c07ce9a8aba12c2271e { 'aliquot_tag': 'ALQ_9eca390f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00918.WGS.N.hg38 C3L-00918 UCEC WGS blood_normal CPT0065320002 58bc0d8e-4cae-4a40-bc4a-2025637ff81d_gdc_realn.bam 122382006922 BAM harmonized CPTAC3 c04969da-c28a-4e6b-9b1a-cec0d56df395 f858811d394f1e75cc7fb715b6bb1114 { 'aliquot_tag': 'ALQ_9eca390f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4371,12 +4852,15 @@ C3L-00921.ADD_30401fcd.miRNA-Seq.T.hg38 C3L-00921 UCEC miRNA-Seq tumor CPT006415 C3L-00921.MethArray.Green.T C3L-00921 UCEC Methylation Array tumor CPT0064150007 202184990057_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 1ef8c0c1-a75d-4a93-a5cb-e2fe55858fbd 27b4956ae0ece26a38447f50018deb6f { 'aliquot_tag': 'ALQ_b73fbb2f', 'gdc_sample_type': 'Primary Tumor' } C3L-00921.MethArray.Red.T C3L-00921 UCEC Methylation Array tumor CPT0064150007 202184990057_R08C01_Red.idat 13676216 IDAT Red NA CPTAC3 ec5b4e0e-9dcf-4431-82bc-ac86de5e6929 77738d0f37ad2827171c4862fa5f0a98 { 'aliquot_tag': 'ALQ_b73fbb2f', 'gdc_sample_type': 'Primary Tumor' } C3L-00921.RNA-Seq.chimeric.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0064150014 84d759d7-2c22-44b0-8a6e-7e2e2a5a57a3.rna_seq.chimeric.gdc_realn.bam 63624121 BAM chimeric harmonized CPTAC3 05e91977-049d-455b-8c2d-4ffb3f83af8b 33516c0c4a14245db8238e010518c9f3 { 'aliquot_tag': 'ALQ_372ddbd4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00921.RNA-Seq.genomic.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0064150014 84d759d7-2c22-44b0-8a6e-7e2e2a5a57a3.rna_seq.genomic.gdc_realn.bam 8017495229 BAM genomic harmonized CPTAC3 9b8c60b2-98dc-4641-a46b-a886894c7a25 66f064f64bf01d676153fe88abbb0082 { 'aliquot_tag': 'ALQ_372ddbd4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00921.RNA-Seq.R1_L003.T C3L-00921 UCEC RNA-Seq tumor CPT0064150014 171011_UNC31-K00269_0086_AHLJLCBBXX_CTTGTA_S7_L003_R1_001.fastq.gz 3584191981 FASTQ R1_L003 unaligned CPTAC3 c8ac958e-2e20-4379-9568-7cc508e311de cd93965ee5b94e1f26b660f265784c4a { 'aliquot_tag': 'ALQ_372ddbd4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00921.RNA-Seq.R1_.T C3L-00921 UCEC RNA-Seq tumor CPT0349820001 20210723_P2_D11_WB7988-plate2_S47_R1_001.fastq.gz 4407530940 FASTQ R1_ unaligned CPTAC3 8a82365e-f5b9-4c4b-a9e1-901c71b6e37e c361dcf7ba6f61da6e6463345021a88c { 'aliquot_tag': 'ALQ_d10cc9ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-00921.RNA-Seq.R2_L003.T C3L-00921 UCEC RNA-Seq tumor CPT0064150014 171011_UNC31-K00269_0086_AHLJLCBBXX_CTTGTA_S7_L003_R2_001.fastq.gz 3766771238 FASTQ R2_L003 unaligned CPTAC3 e292b646-ce77-45a1-a535-cb0dd26898e8 237962fbcb5e9e07fd8b865bfe4379e9 { 'aliquot_tag': 'ALQ_372ddbd4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00921.RNA-Seq.R2_.T C3L-00921 UCEC RNA-Seq tumor CPT0349820001 20210723_P2_D11_WB7988-plate2_S47_R2_001.fastq.gz 4493903995 FASTQ R2_ unaligned CPTAC3 b44e884b-0b39-4fdc-bbad-5ff5c3b2a386 ace8ece2fa59d36a83229fda2a21c4a4 { 'aliquot_tag': 'ALQ_d10cc9ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-00921.RNA-Seq.chimeric.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0349820001 18ac1331-430d-4a0c-bd27-ca4da34fb000.rna_seq.chimeric.gdc_realn.bam 143318674 BAM chimeric harmonized CPTAC3 595c6e54-a5c2-4934-93f4-ec912de3348d 4de7f4d889df7069afcece6d7b9a85f3 { 'aliquot_tag': 'ALQ_d10cc9ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-00921.RNA-Seq.genomic.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0064150014 84d759d7-2c22-44b0-8a6e-7e2e2a5a57a3.rna_seq.genomic.gdc_realn.bam 8017495229 BAM genomic harmonized CPTAC3 d3a11e83-7421-4b6f-97fc-5fd979326040 66f064f64bf01d676153fe88abbb0082 { 'aliquot_tag': 'ALQ_372ddbd4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00921.RNA-Seq.genomic.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0349820001 18ac1331-430d-4a0c-bd27-ca4da34fb000.rna_seq.genomic.gdc_realn.bam 7397003899 BAM genomic harmonized CPTAC3 249c366f-fd14-4068-b350-e7350e238f19 c34a06ace33f9e73ae52bbb3a34d6194 { 'aliquot_tag': 'ALQ_d10cc9ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-00921.RNA-Seq.R1_L003.T C3L-00921 UCEC RNA-Seq tumor CPT0064150014 171011_UNC31-K00269_0086_AHLJLCBBXX_CTTGTA_S7_L003_R1_001.fastq.gz 3584191981 FASTQ R1_L003 unaligned CPTAC3 c8ac958e-2e20-4379-9568-7cc508e311de cd93965ee5b94e1f26b660f265784c4a { 'aliquot_tag': 'ALQ_372ddbd4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00921.RNA-Seq.R2_L003.T C3L-00921 UCEC RNA-Seq tumor CPT0064150014 171011_UNC31-K00269_0086_AHLJLCBBXX_CTTGTA_S7_L003_R2_001.fastq.gz 3766771238 FASTQ R2_L003 unaligned CPTAC3 e292b646-ce77-45a1-a535-cb0dd26898e8 237962fbcb5e9e07fd8b865bfe4379e9 { 'aliquot_tag': 'ALQ_372ddbd4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00921.RNA-Seq.T C3L-00921 UCEC RNA-Seq tumor CPT0349820001 20210723_P2_D11_WB7988-plate2_S47_R1_001.fastq.gz 4407530940 FASTQ unaligned CPTAC3 8a82365e-f5b9-4c4b-a9e1-901c71b6e37e c361dcf7ba6f61da6e6463345021a88c +C3L-00921.RNA-Seq.T C3L-00921 UCEC RNA-Seq tumor CPT0349820001 20210723_P2_D11_WB7988-plate2_S47_R2_001.fastq.gz 4493903995 FASTQ unaligned CPTAC3 b44e884b-0b39-4fdc-bbad-5ff5c3b2a386 ace8ece2fa59d36a83229fda2a21c4a4 C3L-00921.RNA-Seq.transcriptome.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0064150014 84d759d7-2c22-44b0-8a6e-7e2e2a5a57a3.rna_seq.transcriptome.gdc_realn.bam 6083886466 BAM transcriptome harmonized CPTAC3 4d19d87a-c449-462f-90aa-c5c5de468de7 313524262219902b6935c23a260e22dc { 'aliquot_tag': 'ALQ_372ddbd4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00921.RNA-Seq.transcriptome.T.hg38 C3L-00921 UCEC RNA-Seq tumor CPT0349820001 18ac1331-430d-4a0c-bd27-ca4da34fb000.rna_seq.transcriptome.gdc_realn.bam 3108352788 BAM transcriptome harmonized CPTAC3 59c97a9a-ff51-45aa-b0b6-61c80b4ff46d 71f37f9f8ee038ca729a2069219ae6da { 'aliquot_tag': 'ALQ_d10cc9ba', 'gdc_sample_type': 'Primary Tumor' } C3L-00921.WGS.N C3L-00921 UCEC WGS blood_normal CPT0065390002 CPT0065390002.WholeGenome.RP-1303.bam 74478942121 BAM aligned CPTAC3 04f2f715-5b80-41ac-ba2e-9c59a18b1a73 002f6b742ec792990b0dc6d96fd37743 { 'aliquot_tag': 'ALQ_e91a081e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00921.WGS.N.hg38 C3L-00921 UCEC WGS blood_normal CPT0065390002 5af0168b-bb1a-4771-a478-cb4f8ec8fde8_gdc_realn.bam 116281837995 BAM harmonized CPTAC3 4d726701-04ed-4a0a-bcab-495568a316e5 b865bf1bac6d0899f2292b787b4800c8 { 'aliquot_tag': 'ALQ_e91a081e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00921.WGS.T C3L-00921 UCEC WGS tumor CPT0064150007 CPT0064150007.WholeGenome.RP-1303.bam 66982886372 BAM aligned CPTAC3 046967f9-2fa5-4bc0-b032-9dec4caf1cad 95084754cecbe5ac36c052415c7b0bb0 { 'aliquot_tag': 'ALQ_b73fbb2f', 'gdc_sample_type': 'Primary Tumor' } @@ -4395,12 +4879,12 @@ C3L-00923.miRNA-Seq.T C3L-00923 LSCC miRNA-Seq tumor CPT0063430006 180924_UNC31- C3L-00923.miRNA-Seq.T.hg38 C3L-00923 LSCC miRNA-Seq tumor CPT0063430006 8b92affc-6c61-42fd-84ef-13b076d67b90_mirnaseq_gdc_realn.bam 230685844 BAM harmonized CPTAC3 4d5a7ed5-66d8-48fb-95f8-596d85ef10a3 43f272fa0171451254a1b6548cf26cc4 { 'aliquot_tag': 'ALQ_da12d124', 'gdc_sample_type': 'Primary Tumor' } C3L-00923.RNA-Seq.chimeric.A.hg38 C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 4548f3fc-9d9c-43b8-aaa2-9270934900a5.rna_seq.chimeric.gdc_realn.bam 33315321 BAM chimeric harmonized CPTAC3 8fd531d1-6066-49a1-8d4a-54f8ef731e4a a36503387037b9c40b1f54debeed46e1 { 'aliquot_tag': 'ALQ_f88d10a5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00923.RNA-Seq.chimeric.T.hg38 C3L-00923 LSCC RNA-Seq tumor CPT0063430006 cb07a404-6c54-439d-bfa8-b0fccaf4bf8a.rna_seq.chimeric.gdc_realn.bam 26768539 BAM chimeric harmonized CPTAC3 deb7e3eb-e397-4f71-83c9-b0024aa123b7 2359d5c2ae5b46b466b9f9009b3ae2e3 { 'aliquot_tag': 'ALQ_da12d124', 'gdc_sample_type': 'Primary Tumor' } -C3L-00923.RNA-Seq.genomic.A.hg38 C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 4548f3fc-9d9c-43b8-aaa2-9270934900a5.rna_seq.genomic.gdc_realn.bam 9185614731 BAM genomic harmonized CPTAC3 08fcdaec-1792-465d-926f-aff574f60f3e f3866ae276b113ad4e609a2b269a7a87 { 'aliquot_tag': 'ALQ_f88d10a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00923.RNA-Seq.genomic.T.hg38 C3L-00923 LSCC RNA-Seq tumor CPT0063430006 cb07a404-6c54-439d-bfa8-b0fccaf4bf8a.rna_seq.genomic.gdc_realn.bam 7323439249 BAM genomic harmonized CPTAC3 23ad4a9c-e1cb-4bc5-9919-03109dadd796 9781f9aab4a97503fac761e0f692b122 { 'aliquot_tag': 'ALQ_da12d124', 'gdc_sample_type': 'Primary Tumor' } -C3L-00923.RNA-Seq.R1_L001.T C3L-00923 LSCC RNA-Seq tumor CPT0063430006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L001_R1_001.fastq.gz 3401781752 FASTQ R1_L001 unaligned CPTAC3 c5e03418-2572-4583-995b-9f5d154a3c5b bdce6159c7d1321f76cd53ddbc2dece8 { 'aliquot_tag': 'ALQ_da12d124', 'gdc_sample_type': 'Primary Tumor' } -C3L-00923.RNA-Seq.R1_L004.A C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3964127226 FASTQ R1_L004 unaligned CPTAC3 80bee658-8280-48cb-9ace-c7a990192093 caf1af1c39d580c4175c8e410272cc32 { 'aliquot_tag': 'ALQ_f88d10a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00923.RNA-Seq.R2_L001.T C3L-00923 LSCC RNA-Seq tumor CPT0063430006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L001_R2_001.fastq.gz 3664390440 FASTQ R2_L001 unaligned CPTAC3 160068e2-67b7-400f-9626-5cc7f21ac002 12811d7295a344183a4332ce3d0d0e8f { 'aliquot_tag': 'ALQ_da12d124', 'gdc_sample_type': 'Primary Tumor' } -C3L-00923.RNA-Seq.R2_L004.A C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4270849254 FASTQ R2_L004 unaligned CPTAC3 8ebfb07d-48ff-4371-a25a-d32d0acda130 5a5a7351f8be4dbd849d1488c6359c68 { 'aliquot_tag': 'ALQ_f88d10a5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00923.RNA-Seq.genomic.A.hg38 C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 4548f3fc-9d9c-43b8-aaa2-9270934900a5.rna_seq.genomic.gdc_realn.bam 9185614731 BAM genomic harmonized CPTAC3 8a30910a-d091-48f5-9e62-bba53e345ae6 f3866ae276b113ad4e609a2b269a7a87 { 'aliquot_tag': 'ALQ_f88d10a5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00923.RNA-Seq.genomic.T.hg38 C3L-00923 LSCC RNA-Seq tumor CPT0063430006 cb07a404-6c54-439d-bfa8-b0fccaf4bf8a.rna_seq.genomic.gdc_realn.bam 7323439249 BAM genomic harmonized CPTAC3 f43bd82c-94bf-42a7-95f7-1dbf10139938 9781f9aab4a97503fac761e0f692b122 { 'aliquot_tag': 'ALQ_da12d124', 'gdc_sample_type': 'Primary Tumor' } +C3L-00923.RNA-Seq.R1_L001.T C3L-00923 LSCC RNA-Seq tumor CPT0063430006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L001_R1_001.fastq.gz 3401781752 FASTQ R1_L001 unaligned CPTAC3 c5e03418-2572-4583-995b-9f5d154a3c5b bdce6159c7d1321f76cd53ddbc2dece8 { 'aliquot_tag': 'ALQ_da12d124', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00923.RNA-Seq.R1_L004.A C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3964127226 FASTQ R1_L004 unaligned CPTAC3 80bee658-8280-48cb-9ace-c7a990192093 caf1af1c39d580c4175c8e410272cc32 { 'aliquot_tag': 'ALQ_f88d10a5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00923.RNA-Seq.R2_L001.T C3L-00923 LSCC RNA-Seq tumor CPT0063430006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L001_R2_001.fastq.gz 3664390440 FASTQ R2_L001 unaligned CPTAC3 160068e2-67b7-400f-9626-5cc7f21ac002 12811d7295a344183a4332ce3d0d0e8f { 'aliquot_tag': 'ALQ_da12d124', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00923.RNA-Seq.R2_L004.A C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 180516_UNC32-K00270_0095_AHTY5LBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4270849254 FASTQ R2_L004 unaligned CPTAC3 8ebfb07d-48ff-4371-a25a-d32d0acda130 5a5a7351f8be4dbd849d1488c6359c68 { 'aliquot_tag': 'ALQ_f88d10a5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-00923.RNA-Seq.transcriptome.A.hg38 C3L-00923 LSCC RNA-Seq tissue_normal CPT0063440009 4548f3fc-9d9c-43b8-aaa2-9270934900a5.rna_seq.transcriptome.gdc_realn.bam 10742569675 BAM transcriptome harmonized CPTAC3 810bfaec-273c-4b1d-9ca1-3ef6470fafd2 1f473ee433e7028498b83179beebaa69 { 'aliquot_tag': 'ALQ_f88d10a5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00923.RNA-Seq.transcriptome.T.hg38 C3L-00923 LSCC RNA-Seq tumor CPT0063430006 cb07a404-6c54-439d-bfa8-b0fccaf4bf8a.rna_seq.transcriptome.gdc_realn.bam 9008398539 BAM transcriptome harmonized CPTAC3 bbaea97c-0ce1-4e9f-9e19-0d6ed35e1410 83f8fe5a9c3b172df89af541683d4b43 { 'aliquot_tag': 'ALQ_da12d124', 'gdc_sample_type': 'Primary Tumor' } C3L-00923.WGS.A C3L-00923 LSCC WGS tissue_normal CPT0063440006 CPT0063440006.WholeGenome.RP-1303.bam 63456923319 BAM aligned CPTAC3 2746a3e8-ca4b-48b0-8fd2-34e1fe7e306d 2e4046edfc4eaf229767854457aba989 { 'aliquot_tag': 'ALQ_68320d34', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4426,11 +4910,11 @@ C3L-00927.miRNA-Seq.T.hg38 C3L-00927 LSCC miRNA-Seq tumor CPT0063480006 1b177121 C3L-00927.RNA-Seq.chimeric.A.hg38 C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 9a6e38ca-e729-4826-b207-22ec88dc19a0.rna_seq.chimeric.gdc_realn.bam 39049047 BAM chimeric harmonized CPTAC3 339e48ac-e51b-4a2c-a91d-5aa6d09befe5 a410ba42bd08c7582530503414d08057 { 'aliquot_tag': 'ALQ_c65165c0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00927.RNA-Seq.chimeric.T.hg38 C3L-00927 LSCC RNA-Seq tumor CPT0063480006 56e2e134-21bd-4d6e-ac2f-f6a6312328a5.rna_seq.chimeric.gdc_realn.bam 30853424 BAM chimeric harmonized CPTAC3 59ab7776-2eea-4759-bac7-e8c38bdc9658 6b14aed3ca34eaa8300f54e92a4009df { 'aliquot_tag': 'ALQ_adc2e035', 'gdc_sample_type': 'Primary Tumor' } C3L-00927.RNA-Seq.genomic.A.hg38 C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 9a6e38ca-e729-4826-b207-22ec88dc19a0.rna_seq.genomic.gdc_realn.bam 8952118275 BAM genomic harmonized CPTAC3 44954497-1630-4392-b613-579d65f0fa1b 0969c4d20abcf80f581a9d70fb603441 { 'aliquot_tag': 'ALQ_c65165c0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00927.RNA-Seq.genomic.T.hg38 C3L-00927 LSCC RNA-Seq tumor CPT0063480006 56e2e134-21bd-4d6e-ac2f-f6a6312328a5.rna_seq.genomic.gdc_realn.bam 7871752266 BAM genomic harmonized CPTAC3 32089bb5-3bbd-4ae8-8282-a341031eb4f9 11a22f2b6df04c0aa1bfc19a3b852748 { 'aliquot_tag': 'ALQ_adc2e035', 'gdc_sample_type': 'Primary Tumor' } -C3L-00927.RNA-Seq.R1_L001.T C3L-00927 LSCC RNA-Seq tumor CPT0063480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 3710780116 FASTQ R1_L001 unaligned CPTAC3 45c4199e-9f5e-4059-a802-a1c6e62655e0 f7f2465b974e14f97bb3626628783812 { 'aliquot_tag': 'ALQ_adc2e035', 'gdc_sample_type': 'Primary Tumor' } -C3L-00927.RNA-Seq.R1_L004.A C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 180516_UNC32-K00270_0095_AHTY5LBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 4086185678 FASTQ R1_L004 unaligned CPTAC3 d59edba7-cf24-4806-a08e-2b737b0860d6 5b0b0fd4c2be303ec11a7b8a1f5ced1b { 'aliquot_tag': 'ALQ_c65165c0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00927.RNA-Seq.R2_L001.T C3L-00927 LSCC RNA-Seq tumor CPT0063480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 3999654743 FASTQ R2_L001 unaligned CPTAC3 aed7d802-d0a4-4422-a402-c0ea057d51bc 789857a3956d305a6cee021ae0a10eb4 { 'aliquot_tag': 'ALQ_adc2e035', 'gdc_sample_type': 'Primary Tumor' } -C3L-00927.RNA-Seq.R2_L004.A C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 180516_UNC32-K00270_0095_AHTY5LBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4470037308 FASTQ R2_L004 unaligned CPTAC3 114a806a-0150-4c9f-a94d-e1176503c96a 96d99c9c21e4ff76d1d9a29a48fce88c { 'aliquot_tag': 'ALQ_c65165c0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00927.RNA-Seq.genomic.T.hg38 C3L-00927 LSCC RNA-Seq tumor CPT0063480006 56e2e134-21bd-4d6e-ac2f-f6a6312328a5.rna_seq.genomic.gdc_realn.bam 7871752266 BAM genomic harmonized CPTAC3 1f6cb7cb-c0b0-40cb-bd7d-fcac050a27b0 11a22f2b6df04c0aa1bfc19a3b852748 { 'aliquot_tag': 'ALQ_adc2e035', 'gdc_sample_type': 'Primary Tumor' } +C3L-00927.RNA-Seq.R1_L001.T C3L-00927 LSCC RNA-Seq tumor CPT0063480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 3710780116 FASTQ R1_L001 unaligned CPTAC3 45c4199e-9f5e-4059-a802-a1c6e62655e0 f7f2465b974e14f97bb3626628783812 { 'aliquot_tag': 'ALQ_adc2e035', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00927.RNA-Seq.R1_L004.A C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 180516_UNC32-K00270_0095_AHTY5LBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 4086185678 FASTQ R1_L004 unaligned CPTAC3 d59edba7-cf24-4806-a08e-2b737b0860d6 5b0b0fd4c2be303ec11a7b8a1f5ced1b { 'aliquot_tag': 'ALQ_c65165c0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00927.RNA-Seq.R2_L001.T C3L-00927 LSCC RNA-Seq tumor CPT0063480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 3999654743 FASTQ R2_L001 unaligned CPTAC3 aed7d802-d0a4-4422-a402-c0ea057d51bc 789857a3956d305a6cee021ae0a10eb4 { 'aliquot_tag': 'ALQ_adc2e035', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00927.RNA-Seq.R2_L004.A C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 180516_UNC32-K00270_0095_AHTY5LBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4470037308 FASTQ R2_L004 unaligned CPTAC3 114a806a-0150-4c9f-a94d-e1176503c96a 96d99c9c21e4ff76d1d9a29a48fce88c { 'aliquot_tag': 'ALQ_c65165c0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-00927.RNA-Seq.transcriptome.A.hg38 C3L-00927 LSCC RNA-Seq tissue_normal CPT0063500009 9a6e38ca-e729-4826-b207-22ec88dc19a0.rna_seq.transcriptome.gdc_realn.bam 11223351816 BAM transcriptome harmonized CPTAC3 39235af9-f191-4760-aeba-b8783fdb3581 875f64dc28b8342125bb400b4b6c4a39 { 'aliquot_tag': 'ALQ_c65165c0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00927.RNA-Seq.transcriptome.T.hg38 C3L-00927 LSCC RNA-Seq tumor CPT0063480006 56e2e134-21bd-4d6e-ac2f-f6a6312328a5.rna_seq.transcriptome.gdc_realn.bam 11412343519 BAM transcriptome harmonized CPTAC3 c905ac3e-fd59-439e-bbee-96a6190f6868 ef0ad316790468be61317cebce0cdad8 { 'aliquot_tag': 'ALQ_adc2e035', 'gdc_sample_type': 'Primary Tumor' } C3L-00927.WGS.A C3L-00927 LSCC WGS tissue_normal CPT0063500006 CPT0063500006.WholeGenome.RP-1303.bam 70608489871 BAM aligned CPTAC3 04e5bcd9-6e98-4ca4-9917-f1eb712e5595 0a7b88a7f3b9c3154843e1738c7fbeb0 { 'aliquot_tag': 'ALQ_56ee7851', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4452,9 +4936,9 @@ C3L-00928.MethArray.Red.T C3L-00928 PDA Methylation Array tumor CPT0063570009 20 C3L-00928.miRNA-Seq.T C3L-00928 PDA miRNA-Seq tumor CPT0063570006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTGAAA_S12_L003_R1_001.unaln.bam 326389033 BAM unaligned CPTAC3 3713d65b-aa72-4e81-bc17-dcba312e3b9a 1374d0c4bdeebc3d2a7e9b2c33627b52 { 'aliquot_tag': 'ALQ_e4cea441', 'gdc_sample_type': 'Primary Tumor' } C3L-00928.miRNA-Seq.T.hg38 C3L-00928 PDA miRNA-Seq tumor CPT0063570006 edc64397-dd53-46a9-a3db-b0fc2853e9df_mirnaseq_gdc_realn.bam 362867737 BAM harmonized CPTAC3 cf12de48-ec42-4d2c-8329-301b9c760e06 d09f39223714648abe2070dacb994928 { 'aliquot_tag': 'ALQ_e4cea441', 'gdc_sample_type': 'Primary Tumor' } C3L-00928.RNA-Seq.chimeric.T.hg38 C3L-00928 PDA RNA-Seq tumor CPT0063570006 116a2618-9c1a-4942-b64a-b269d87d6422.rna_seq.chimeric.gdc_realn.bam 53456513 BAM chimeric harmonized CPTAC3 feefeb71-0102-4985-8154-f4a7d5ae3889 7257b26e8202af3b78c5906d2aa0cf41 { 'aliquot_tag': 'ALQ_e4cea441', 'gdc_sample_type': 'Primary Tumor' } -C3L-00928.RNA-Seq.genomic.T.hg38 C3L-00928 PDA RNA-Seq tumor CPT0063570006 116a2618-9c1a-4942-b64a-b269d87d6422.rna_seq.genomic.gdc_realn.bam 6476440452 BAM genomic harmonized CPTAC3 4fffb3ab-735c-48d8-8ceb-bec34748dd8f 7fa7117870fb628705ff798e943f8b5d { 'aliquot_tag': 'ALQ_e4cea441', 'gdc_sample_type': 'Primary Tumor' } -C3L-00928.RNA-Seq.R1_L008.T C3L-00928 PDA RNA-Seq tumor CPT0063570006 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L008_R1_001.fastq.gz 3117828591 FASTQ R1_L008 unaligned CPTAC3 b8776601-597c-4419-ab0e-c770b20442a4 7d0ddde0d011d7963de6a1ac5c370e42 { 'aliquot_tag': 'ALQ_e4cea441', 'gdc_sample_type': 'Primary Tumor' } -C3L-00928.RNA-Seq.R2_L008.T C3L-00928 PDA RNA-Seq tumor CPT0063570006 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L008_R2_001.fastq.gz 3383277976 FASTQ R2_L008 unaligned CPTAC3 34286639-b4c7-4600-9fe2-49fe02c4fd10 e219d6410d48ff238d7bad7a92731fea { 'aliquot_tag': 'ALQ_e4cea441', 'gdc_sample_type': 'Primary Tumor' } +C3L-00928.RNA-Seq.genomic.T.hg38 C3L-00928 PDA RNA-Seq tumor CPT0063570006 116a2618-9c1a-4942-b64a-b269d87d6422.rna_seq.genomic.gdc_realn.bam 6476440452 BAM genomic harmonized CPTAC3 e5ecefe4-349b-41e0-a282-fbdb146b2d41 7fa7117870fb628705ff798e943f8b5d { 'aliquot_tag': 'ALQ_e4cea441', 'gdc_sample_type': 'Primary Tumor' } +C3L-00928.RNA-Seq.R1_L008.T C3L-00928 PDA RNA-Seq tumor CPT0063570006 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L008_R1_001.fastq.gz 3117828591 FASTQ R1_L008 unaligned CPTAC3 b8776601-597c-4419-ab0e-c770b20442a4 7d0ddde0d011d7963de6a1ac5c370e42 { 'aliquot_tag': 'ALQ_e4cea441', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00928.RNA-Seq.R2_L008.T C3L-00928 PDA RNA-Seq tumor CPT0063570006 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L008_R2_001.fastq.gz 3383277976 FASTQ R2_L008 unaligned CPTAC3 34286639-b4c7-4600-9fe2-49fe02c4fd10 e219d6410d48ff238d7bad7a92731fea { 'aliquot_tag': 'ALQ_e4cea441', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-00928.RNA-Seq.transcriptome.T.hg38 C3L-00928 PDA RNA-Seq tumor CPT0063570006 116a2618-9c1a-4942-b64a-b269d87d6422.rna_seq.transcriptome.gdc_realn.bam 8552602745 BAM transcriptome harmonized CPTAC3 44e17d16-a8b0-4c9b-bc3b-8884d8dbee84 c9a0c63606c61b09b7a9c2828c95e862 { 'aliquot_tag': 'ALQ_e4cea441', 'gdc_sample_type': 'Primary Tumor' } C3L-00928.Targeted.T C3L-00928 PDA Targeted Sequencing tumor CPT0063570009_1 CPT0063570009_1.CustomSelection.RP-1303.PDO-18786.bam 4040420667 BAM aligned CPTAC3 04602530-f401-4c21-aa13-79f3b667507c 2c688204e4118def99033ca03d4f31dd { 'aliquot_tag': 'ALQ_1ea1e918', 'gdc_sample_type': 'Primary Tumor' } C3L-00928.Targeted.T.hg38 C3L-00928 PDA Targeted Sequencing tumor CPT0063570009_1 bd1adbbd-9936-40c2-8a9e-83f1b1078106_targetedsequencing_gdc_realn.bam 5536450301 BAM harmonized CPTAC3 9f61c2ae-c71b-4e10-bda8-7b77e29ab4d9 6b6639ae3e86292f685671efe4d4c165 { 'aliquot_tag': 'ALQ_1ea1e918', 'gdc_sample_type': 'Primary Tumor' } @@ -4478,8 +4962,8 @@ C3L-00930.miRNA-Seq.T C3L-00930 UCEC miRNA-Seq tumor CPT0027010006 190828_UNC32- C3L-00930.miRNA-Seq.T.hg38 C3L-00930 UCEC miRNA-Seq tumor CPT0027010006 226a1ba5-1e36-4797-b566-396c3b631020_mirnaseq_gdc_realn.bam 306484725 BAM harmonized CPTAC3 de75cafd-363a-4102-8ef2-2b900cf5bfa1 de9d91ee736c9c8635996ccefc3d4961 { 'aliquot_tag': 'ALQ_4b46eabb', 'gdc_sample_type': 'Primary Tumor' } C3L-00930.RNA-Seq.chimeric.T.hg38 C3L-00930 UCEC RNA-Seq tumor CPT0027010006 667adff8-9c3a-4e8c-a742-cea5ba422d29.rna_seq.chimeric.gdc_realn.bam 60681891 BAM chimeric harmonized CPTAC3 aa8a4c08-543c-4774-9292-d50291388162 1c4854f6e7fabeab4a759c9dd4b3814f { 'aliquot_tag': 'ALQ_4b46eabb', 'gdc_sample_type': 'Primary Tumor' } C3L-00930.RNA-Seq.genomic.T.hg38 C3L-00930 UCEC RNA-Seq tumor CPT0027010006 667adff8-9c3a-4e8c-a742-cea5ba422d29.rna_seq.genomic.gdc_realn.bam 8441421981 BAM genomic harmonized CPTAC3 5b610db7-096f-41d8-845c-9d59ca95069c 60becbd5f46dae9fad14254ab235eac2 { 'aliquot_tag': 'ALQ_4b46eabb', 'gdc_sample_type': 'Primary Tumor' } -C3L-00930.RNA-Seq.R1_L003.T C3L-00930 UCEC RNA-Seq tumor CPT0027010006 170912_UNC31-K00269_0081_AHL3YKBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 3772691344 FASTQ R1_L003 unaligned CPTAC3 752ef154-292d-4b3a-8dcf-37cf3498ecb8 83a78aeec081bd0a4864ff3b2b33233a { 'aliquot_tag': 'ALQ_4b46eabb', 'gdc_sample_type': 'Primary Tumor' } -C3L-00930.RNA-Seq.R2_L003.T C3L-00930 UCEC RNA-Seq tumor CPT0027010006 170912_UNC31-K00269_0081_AHL3YKBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 4242501442 FASTQ R2_L003 unaligned CPTAC3 6f63b400-405c-4fa4-ae13-ec4166bc4d0f e620794c7799b32d6ac271738bbbed7c { 'aliquot_tag': 'ALQ_4b46eabb', 'gdc_sample_type': 'Primary Tumor' } +C3L-00930.RNA-Seq.R1_L003.T C3L-00930 UCEC RNA-Seq tumor CPT0027010006 170912_UNC31-K00269_0081_AHL3YKBBXX_GGCTAC_S12_L003_R1_001.fastq.gz 3772691344 FASTQ R1_L003 unaligned CPTAC3 752ef154-292d-4b3a-8dcf-37cf3498ecb8 83a78aeec081bd0a4864ff3b2b33233a { 'aliquot_tag': 'ALQ_4b46eabb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00930.RNA-Seq.R2_L003.T C3L-00930 UCEC RNA-Seq tumor CPT0027010006 170912_UNC31-K00269_0081_AHL3YKBBXX_GGCTAC_S12_L003_R2_001.fastq.gz 4242501442 FASTQ R2_L003 unaligned CPTAC3 6f63b400-405c-4fa4-ae13-ec4166bc4d0f e620794c7799b32d6ac271738bbbed7c { 'aliquot_tag': 'ALQ_4b46eabb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-00930.RNA-Seq.transcriptome.T.hg38 C3L-00930 UCEC RNA-Seq tumor CPT0027010006 667adff8-9c3a-4e8c-a742-cea5ba422d29.rna_seq.transcriptome.gdc_realn.bam 8992734092 BAM transcriptome harmonized CPTAC3 1e5448d8-97af-4495-b22b-26b57d4e5c5f a50226fc852959d27032ecf5ec83e876 { 'aliquot_tag': 'ALQ_4b46eabb', 'gdc_sample_type': 'Primary Tumor' } C3L-00930.WGS.N C3L-00930 UCEC WGS blood_normal CPT0027070002 CPT0027070002.WholeGenome.RP-1303.bam 59740846028 BAM aligned CPTAC3 d9cea9b7-6c63-4405-915d-8c62734f94df 572524d364da5e8829180a92faf85e3a { 'aliquot_tag': 'ALQ_c36bdb02', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00930.WGS.N.hg38 C3L-00930 UCEC WGS blood_normal CPT0027070002 5708aec3-d858-4356-8fae-69eb52a5f8ce_gdc_realn.bam 85913008913 BAM harmonized CPTAC3 6eae4de5-f622-4da6-a903-277839115653 e6ed1a886cb4d5d5a70e88dee15c028e { 'aliquot_tag': 'ALQ_c36bdb02', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4497,16 +4981,19 @@ C3L-00932.miRNA-Seq.T C3L-00932 UCEC miRNA-Seq tumor CPT0027120006 180924_UNC31- C3L-00932.miRNA-Seq.T.hg38 C3L-00932 UCEC miRNA-Seq tumor CPT0027120006 cbc4e222-8b77-43d9-8991-2ad9365e88a9_mirnaseq_gdc_realn.bam 353491131 BAM harmonized CPTAC3 f67c082b-f590-494e-9b4e-69cdecb64684 440682db7c0d526257559a24dab72ca5 { 'aliquot_tag': 'ALQ_c7ba43ce', 'gdc_sample_type': 'Primary Tumor' } C3L-00932.RNA-Seq.chimeric.A.hg38 C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 58c5ea3b-47b0-45c7-a05e-b957f1de9cd1.rna_seq.chimeric.gdc_realn.bam 121751845 BAM chimeric harmonized CPTAC3 80237dd7-1563-4577-8f65-1272e8441be9 cef1521ee5207f8072a1491230d71f07 { 'aliquot_tag': 'ALQ_fada6a7e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00932.RNA-Seq.chimeric.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027120006 e67b86d8-5f65-43fd-8e6b-d5379fc3121e.rna_seq.chimeric.gdc_realn.bam 68129413 BAM chimeric harmonized CPTAC3 7e934827-ab90-4444-85c1-3e49c4150fb2 1da24c76f8b054beaddcd837d3802b0e { 'aliquot_tag': 'ALQ_c7ba43ce', 'gdc_sample_type': 'Primary Tumor' } -C3L-00932.RNA-Seq.genomic.A.hg38 C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 58c5ea3b-47b0-45c7-a05e-b957f1de9cd1.rna_seq.genomic.gdc_realn.bam 8239682827 BAM genomic harmonized CPTAC3 a1b71bd4-9c49-4a3f-8b39-efdb373e1ca2 5eab7ba73c654aeb7ac712e9a599a3c9 { 'aliquot_tag': 'ALQ_fada6a7e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00932.RNA-Seq.genomic.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027120006 e67b86d8-5f65-43fd-8e6b-d5379fc3121e.rna_seq.genomic.gdc_realn.bam 6678600354 BAM genomic harmonized CPTAC3 611e93c0-e0a4-420f-805e-e899725213a4 16a23bc257c6a455fb896abc6881963c { 'aliquot_tag': 'ALQ_c7ba43ce', 'gdc_sample_type': 'Primary Tumor' } -C3L-00932.RNA-Seq.R1_L001.A C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L001_R1_001.fastq.gz 3903358995 FASTQ R1_L001 unaligned CPTAC3 db54b077-a421-4528-9067-5fdc52ee5366 d0abb28786e6e4c58e724c1f62539bdd { 'aliquot_tag': 'ALQ_fada6a7e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00932.RNA-Seq.R1_L004.T C3L-00932 UCEC RNA-Seq tumor CPT0027120006 170912_UNC31-K00269_0081_AHL3YKBBXX_CTTGTA_S13_L004_R1_001.fastq.gz 3180273949 FASTQ R1_L004 unaligned CPTAC3 dd5354a9-7c2a-48a3-8381-96ed8ee9ea08 eb18f81d5c1f76a728419059e4f50067 { 'aliquot_tag': 'ALQ_c7ba43ce', 'gdc_sample_type': 'Primary Tumor' } -C3L-00932.RNA-Seq.R1_.T C3L-00932 UCEC RNA-Seq tumor CPT0027140001 20210723_P2_G2_WB7988-plate2_S74_R1_001.fastq.gz 8404847400 FASTQ R1_ unaligned CPTAC3 34d82b78-5f6f-46cd-aae7-ef8249ddbd81 e880eb8bd8c202aef6035803e3119eae { 'aliquot_tag': 'ALQ_d69e23cd', 'gdc_sample_type': 'Primary Tumor' } -C3L-00932.RNA-Seq.R2_L001.A C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L001_R2_001.fastq.gz 4432981778 FASTQ R2_L001 unaligned CPTAC3 1d2625d3-cb72-4722-aee4-b522a30139e0 c913df384d4455f3379e6a6146ddb28e { 'aliquot_tag': 'ALQ_fada6a7e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00932.RNA-Seq.R2_L004.T C3L-00932 UCEC RNA-Seq tumor CPT0027120006 170912_UNC31-K00269_0081_AHL3YKBBXX_CTTGTA_S13_L004_R2_001.fastq.gz 3523214854 FASTQ R2_L004 unaligned CPTAC3 14fc8a67-8464-475b-9c69-0ab40757f0d7 7391742e9e5224d3133e6ffb940d1c1d { 'aliquot_tag': 'ALQ_c7ba43ce', 'gdc_sample_type': 'Primary Tumor' } -C3L-00932.RNA-Seq.R2_.T C3L-00932 UCEC RNA-Seq tumor CPT0027140001 20210723_P2_G2_WB7988-plate2_S74_R2_001.fastq.gz 8495375424 FASTQ R2_ unaligned CPTAC3 aae7f0ef-68aa-4bd1-86da-060e264ba3ab d643bc71eb36240b2fdc7a4bf98c3937 { 'aliquot_tag': 'ALQ_d69e23cd', 'gdc_sample_type': 'Primary Tumor' } +C3L-00932.RNA-Seq.chimeric.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027140001 3db324de-f2b3-4e31-9074-eca6ba7c6a17.rna_seq.chimeric.gdc_realn.bam 295720641 BAM chimeric harmonized CPTAC3 3dcea495-8df3-49c2-a2d5-da3638a68b9d f7ec8d209bf46ac5eeb479851fb0a393 { 'aliquot_tag': 'ALQ_d69e23cd', 'gdc_sample_type': 'Primary Tumor' } +C3L-00932.RNA-Seq.genomic.A.hg38 C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 58c5ea3b-47b0-45c7-a05e-b957f1de9cd1.rna_seq.genomic.gdc_realn.bam 8239682827 BAM genomic harmonized CPTAC3 8725e3cd-0431-4c02-8670-d7717104d239 5eab7ba73c654aeb7ac712e9a599a3c9 { 'aliquot_tag': 'ALQ_fada6a7e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00932.RNA-Seq.genomic.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027120006 e67b86d8-5f65-43fd-8e6b-d5379fc3121e.rna_seq.genomic.gdc_realn.bam 6678600354 BAM genomic harmonized CPTAC3 f4ffb295-e382-4fe3-ba99-aae10d3130bb 16a23bc257c6a455fb896abc6881963c { 'aliquot_tag': 'ALQ_c7ba43ce', 'gdc_sample_type': 'Primary Tumor' } +C3L-00932.RNA-Seq.genomic.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027140001 3db324de-f2b3-4e31-9074-eca6ba7c6a17.rna_seq.genomic.gdc_realn.bam 13402278524 BAM genomic harmonized CPTAC3 f1146142-d36e-4752-ac19-acf6ef70bfe2 fd7de9ffc2e1a0e8387702310fe8c8be { 'aliquot_tag': 'ALQ_d69e23cd', 'gdc_sample_type': 'Primary Tumor' } +C3L-00932.RNA-Seq.R1_L001.A C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L001_R1_001.fastq.gz 3903358995 FASTQ R1_L001 unaligned CPTAC3 db54b077-a421-4528-9067-5fdc52ee5366 d0abb28786e6e4c58e724c1f62539bdd { 'aliquot_tag': 'ALQ_fada6a7e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-00932.RNA-Seq.R1_L004.T C3L-00932 UCEC RNA-Seq tumor CPT0027120006 170912_UNC31-K00269_0081_AHL3YKBBXX_CTTGTA_S13_L004_R1_001.fastq.gz 3180273949 FASTQ R1_L004 unaligned CPTAC3 dd5354a9-7c2a-48a3-8381-96ed8ee9ea08 eb18f81d5c1f76a728419059e4f50067 { 'aliquot_tag': 'ALQ_c7ba43ce', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00932.RNA-Seq.R2_L001.A C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L001_R2_001.fastq.gz 4432981778 FASTQ R2_L001 unaligned CPTAC3 1d2625d3-cb72-4722-aee4-b522a30139e0 c913df384d4455f3379e6a6146ddb28e { 'aliquot_tag': 'ALQ_fada6a7e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-00932.RNA-Seq.R2_L004.T C3L-00932 UCEC RNA-Seq tumor CPT0027120006 170912_UNC31-K00269_0081_AHL3YKBBXX_CTTGTA_S13_L004_R2_001.fastq.gz 3523214854 FASTQ R2_L004 unaligned CPTAC3 14fc8a67-8464-475b-9c69-0ab40757f0d7 7391742e9e5224d3133e6ffb940d1c1d { 'aliquot_tag': 'ALQ_c7ba43ce', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00932.RNA-Seq.T C3L-00932 UCEC RNA-Seq tumor CPT0027140001 20210723_P2_G2_WB7988-plate2_S74_R1_001.fastq.gz 8404847400 FASTQ unaligned CPTAC3 34d82b78-5f6f-46cd-aae7-ef8249ddbd81 e880eb8bd8c202aef6035803e3119eae +C3L-00932.RNA-Seq.T C3L-00932 UCEC RNA-Seq tumor CPT0027140001 20210723_P2_G2_WB7988-plate2_S74_R2_001.fastq.gz 8495375424 FASTQ unaligned CPTAC3 aae7f0ef-68aa-4bd1-86da-060e264ba3ab d643bc71eb36240b2fdc7a4bf98c3937 C3L-00932.RNA-Seq.transcriptome.A.hg38 C3L-00932 UCEC RNA-Seq tissue_normal CPT0027130006 58c5ea3b-47b0-45c7-a05e-b957f1de9cd1.rna_seq.transcriptome.gdc_realn.bam 9665728375 BAM transcriptome harmonized CPTAC3 a2c7f35a-1010-49ad-9f2c-bf7ec4bc2b9d 9b814e067d86f0f2f2385b2e3c0b2611 { 'aliquot_tag': 'ALQ_fada6a7e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00932.RNA-Seq.transcriptome.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027120006 e67b86d8-5f65-43fd-8e6b-d5379fc3121e.rna_seq.transcriptome.gdc_realn.bam 8913668661 BAM transcriptome harmonized CPTAC3 06212c20-4c1f-4032-955c-9ef86960e54e 5b348ed747d48782a4001feba33b9156 { 'aliquot_tag': 'ALQ_c7ba43ce', 'gdc_sample_type': 'Primary Tumor' } +C3L-00932.RNA-Seq.transcriptome.T.hg38 C3L-00932 UCEC RNA-Seq tumor CPT0027140001 3db324de-f2b3-4e31-9074-eca6ba7c6a17.rna_seq.transcriptome.gdc_realn.bam 7898797823 BAM transcriptome harmonized CPTAC3 25be226f-4468-4dc4-ac4c-428cd91a91cb 8406921bb15497bb23229ffa6cf91c90 { 'aliquot_tag': 'ALQ_d69e23cd', 'gdc_sample_type': 'Primary Tumor' } C3L-00932.WGS.A C3L-00932 UCEC WGS tissue_normal CPT0027130009 CPT0027130009.WholeGenome.RP-1303.bam 56354902148 BAM aligned CPTAC3 03167521-c05a-4895-b1e0-254f06812837 1f5a6d5b7d7f9a3c00cebc4d902b98e3 { 'aliquot_tag': 'ALQ_6a6577ef', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00932.WGS.A.hg38 C3L-00932 UCEC WGS tissue_normal CPT0027130009 b79e342b-9467-45ba-8e99-d467ddfc6747_wgs_gdc_realn.bam 81594243258 BAM harmonized CPTAC3 c111a067-1178-4466-a0c4-0c3dec761db2 6385fc88d8ed2d7435a43ae960705083 { 'aliquot_tag': 'ALQ_6a6577ef', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00932.WGS.N C3L-00932 UCEC WGS blood_normal CPT0027180002 CPT0027180002.WholeGenome.RP-1303.bam 62695472060 BAM aligned CPTAC3 2180b05a-5913-4416-8645-6b802ab705f0 679a012766a12849307ef8c14929e6b1 { 'aliquot_tag': 'ALQ_8a679f76', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4525,16 +5012,16 @@ C3L-00935.miRNA-Seq.A C3L-00935 UCEC miRNA-Seq tissue_normal CPT0027230006 18110 C3L-00935.miRNA-Seq.A.hg38 C3L-00935 UCEC miRNA-Seq tissue_normal CPT0027230006 40621d44-4374-4778-9aa8-203addb3a8e2_mirnaseq_gdc_realn.bam 274888060 BAM harmonized CPTAC3 fb800b1b-caca-4cd3-8feb-98b502c26e0f 73ab5aa9967e03859192a3810d907635 { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00935.miRNA-Seq.T C3L-00935 UCEC miRNA-Seq tumor CPT0027220013 181012_UNC32-K00270_0124_AH223CBBXY_CGATGT_S23_L004_R1_001.unaln.bam 262645305 BAM unaligned CPTAC3 4865126d-9932-47c4-9f21-11ec2e8d7755 e47bcca464bdeb93def8d3a09db8984f { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor' } C3L-00935.miRNA-Seq.T.hg38 C3L-00935 UCEC miRNA-Seq tumor CPT0027220013 2a95c562-d2ed-414e-aa62-05534332a93a_mirnaseq_gdc_realn.bam 291083435 BAM harmonized CPTAC3 0eccff8a-2d64-44c3-8339-49481cde73ac eb78752a46472dac87f7d2cb4777275f { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00935.RNA-Seq.chimeric.A.hg38 C3L-00935 UCEC RNA-Seq tissue_normal CPT0027230006 3c722dbb-2e8b-46dc-92da-99bd991568e0.rna_seq.chimeric.gdc_realn.bam 161988589 BAM chimeric harmonized CPTAC3 f5a00af0-d227-47a2-9588-15b072e49b25 44d663576a62f99d16be5c3c4a11edb8 { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00935.RNA-Seq.chimeric.T.hg38 C3L-00935 UCEC RNA-Seq tumor CPT0027220013 35c7131c-209a-4edf-8d46-520ad1dbee9a.rna_seq.chimeric.gdc_realn.bam 55156580 BAM chimeric harmonized CPTAC3 6149f46f-4bf6-44f2-b7b1-5b59d45fc403 a62c2b568546a0672e923866a9ce9ef9 { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00935.RNA-Seq.genomic.A.hg38 C3L-00935 UCEC RNA-Seq tissue_normal CPT0027230006 3c722dbb-2e8b-46dc-92da-99bd991568e0.rna_seq.genomic.gdc_realn.bam 9528489775 BAM genomic harmonized CPTAC3 0b2fad41-5d67-46bc-b1ee-97f4d62a3c6c 72403d25f91306d4977607d1f4561ab4 { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00935.RNA-Seq.genomic.T.hg38 C3L-00935 UCEC RNA-Seq tumor CPT0027220013 35c7131c-209a-4edf-8d46-520ad1dbee9a.rna_seq.genomic.gdc_realn.bam 8067316137 BAM genomic harmonized CPTAC3 406d591c-de8b-4d87-a6fc-a3c7072a92c4 2f1b6d166a964f8a896fa9a826b22a7d { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00935.RNA-Seq.R1_L001.A C3L-00935 UCEC RNA-Seq tissue_normal CPT0027230006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L001_R1_001.fastq.gz 4410023854 FASTQ R1_L001 unaligned CPTAC3 0c5dacc7-1965-44c4-8864-b3cfed6e7ae6 45e397597808b7cedabd3e5dd14c84be { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00935.RNA-Seq.R1_L004.T C3L-00935 UCEC RNA-Seq tumor CPT0027220013 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3536146701 FASTQ R1_L004 unaligned CPTAC3 042146c9-1d4e-4351-a3d0-43c16ff82f41 39e62098d14d891b8f8a903903dbb10a { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00935.RNA-Seq.R2_L001.A C3L-00935 UCEC RNA-Seq tissue_normal CPT0027230006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L001_R2_001.fastq.gz 4987811936 FASTQ R2_L001 unaligned CPTAC3 1ac17d45-b695-4b0c-a71c-5fc529eb7c16 e7a2d0c0d0cec86feba30ad91d0af600 { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00935.RNA-Seq.R2_L004.T C3L-00935 UCEC RNA-Seq tumor CPT0027220013 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 3947060523 FASTQ R2_L004 unaligned CPTAC3 6d4a7c47-3360-4676-aa9e-66ded7ac3000 bb1c583d6f340f5ac00cc4ad83e602dc { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor' } -C3L-00935.RNA-Seq.transcriptome.A.hg38 C3L-00935 UCEC RNA-Seq tissue_normal CPT0027230006 3c722dbb-2e8b-46dc-92da-99bd991568e0.rna_seq.transcriptome.gdc_realn.bam 10260671090 BAM transcriptome harmonized CPTAC3 9be396e1-9cd7-49a7-853f-db34a1569197 e19b1c3b51d003f4407d2526fd98833f { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00935.RNA-Seq.transcriptome.T.hg38 C3L-00935 UCEC RNA-Seq tumor CPT0027220013 35c7131c-209a-4edf-8d46-520ad1dbee9a.rna_seq.transcriptome.gdc_realn.bam 8412571680 BAM transcriptome harmonized CPTAC3 ea74ccf3-d771-4044-a153-0ffe5e8d9ba3 0efb65554b686cc98d7035913352a2da { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor' } +C3L-00935.RNA-Seq.chimeric.A.hg38 C3L-00935 UCEC RNA-Seq tissue_normal CPT0027230006 a7b721b0-1a17-42c6-bc05-f0ff7bd5003f.rna_seq.chimeric.gdc_realn.bam 161958738 BAM chimeric harmonized CPTAC3 3527ee4c-6952-432b-ad66-91d92b829dbe 4f417ad27b699eb2324d87dc3659454e { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00935.RNA-Seq.chimeric.T.hg38 C3L-00935 UCEC RNA-Seq tumor CPT0027220013 a95ce7ec-828f-499d-970f-9355239be85c.rna_seq.chimeric.gdc_realn.bam 55137765 BAM chimeric harmonized CPTAC3 5da28c22-17ad-4ae5-8fc7-f97da488cde2 7c9f1f9484d1c71401cd69432e1ba880 { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor' } +C3L-00935.RNA-Seq.genomic.A.hg38 C3L-00935 UCEC RNA-Seq tissue_normal CPT0027230006 a7b721b0-1a17-42c6-bc05-f0ff7bd5003f.rna_seq.genomic.gdc_realn.bam 9529338219 BAM genomic harmonized CPTAC3 491dc107-62c9-4d0a-961c-d815885c8b72 819a360a5d99b0d3c85bab030d2d7667 { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00935.RNA-Seq.genomic.T.hg38 C3L-00935 UCEC RNA-Seq tumor CPT0027220013 a95ce7ec-828f-499d-970f-9355239be85c.rna_seq.genomic.gdc_realn.bam 8067932130 BAM genomic harmonized CPTAC3 eb50f33d-9f47-4807-a04f-20eb4b4b0d78 6ef781e2c408de36cc970bfd41c3d9ba { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor' } +C3L-00935.RNA-Seq.R1_L001.A C3L-00935 UCEC RNA-Seq tissue_normal CPT0027230006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L001_R1_001.fastq.gz 4410023854 FASTQ R1_L001 unaligned CPTAC3 0c5dacc7-1965-44c4-8864-b3cfed6e7ae6 45e397597808b7cedabd3e5dd14c84be { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-00935.RNA-Seq.R1_L004.T C3L-00935 UCEC RNA-Seq tumor CPT0027220013 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3536146701 FASTQ R1_L004 unaligned CPTAC3 042146c9-1d4e-4351-a3d0-43c16ff82f41 39e62098d14d891b8f8a903903dbb10a { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00935.RNA-Seq.R2_L001.A C3L-00935 UCEC RNA-Seq tissue_normal CPT0027230006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L001_R2_001.fastq.gz 4987811936 FASTQ R2_L001 unaligned CPTAC3 1ac17d45-b695-4b0c-a71c-5fc529eb7c16 e7a2d0c0d0cec86feba30ad91d0af600 { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-00935.RNA-Seq.R2_L004.T C3L-00935 UCEC RNA-Seq tumor CPT0027220013 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 3947060523 FASTQ R2_L004 unaligned CPTAC3 6d4a7c47-3360-4676-aa9e-66ded7ac3000 bb1c583d6f340f5ac00cc4ad83e602dc { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00935.RNA-Seq.transcriptome.A.hg38 C3L-00935 UCEC RNA-Seq tissue_normal CPT0027230006 a7b721b0-1a17-42c6-bc05-f0ff7bd5003f.rna_seq.transcriptome.gdc_realn.bam 11831519354 BAM transcriptome harmonized CPTAC3 781211a1-a288-4540-98ac-41149f48652d 2e387f4b7a80a967c50ec3e3e4c5e1a4 { 'aliquot_tag': 'ALQ_7c4e18d0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00935.RNA-Seq.transcriptome.T.hg38 C3L-00935 UCEC RNA-Seq tumor CPT0027220013 a95ce7ec-828f-499d-970f-9355239be85c.rna_seq.transcriptome.gdc_realn.bam 9558380307 BAM transcriptome harmonized CPTAC3 fa01042b-54d4-40de-b6cf-767952d5ade8 00d0762f4d92d1d902cc969b74725c5d { 'aliquot_tag': 'ALQ_285ff4ae', 'gdc_sample_type': 'Primary Tumor' } C3L-00935.WGS.A C3L-00935 UCEC WGS tissue_normal CPT0027230009 CPT0027230009.WholeGenome.RP-1303.bam 53125099105 BAM aligned CPTAC3 3bfe2725-93f2-420f-86cb-1c3a70fad0bb 01518a399f6ddacccd449ef744e9fddc { 'aliquot_tag': 'ALQ_ecf10541', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00935.WGS.A.hg38 C3L-00935 UCEC WGS tissue_normal CPT0027230009 821fdf87-30a0-4dd1-9a9d-3d3bb7efbab0_wgs_gdc_realn.bam 77015541916 BAM harmonized CPTAC3 088efaf5-f1ef-44d1-a675-f7b03464e169 6f4218bf3175425656de167805d16f54 { 'aliquot_tag': 'ALQ_ecf10541', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00935.WGS.N C3L-00935 UCEC WGS blood_normal CPT0027280002 CPT0027280002.WholeGenome.RP-1303.bam 70082199132 BAM aligned CPTAC3 c2eb1a15-5ed5-4351-9df5-e169743f656c 0e7d84c5c33fec87983c58982f2e28a0 { 'aliquot_tag': 'ALQ_cf3edd8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4552,12 +5039,15 @@ C3L-00938.MethArray.Red.T C3L-00938 UCEC Methylation Array tumor CPT0016260006 2 C3L-00938.miRNA-Seq.T C3L-00938 UCEC miRNA-Seq tumor CPT0016260009 180924_UNC31-K00269_0154_AHWTMLBBXX_CTCAGA_S32_L002_R1_001.unaln.bam 307830642 BAM unaligned CPTAC3 ef1cfd7c-3e08-4cb3-8321-2927e3f0741e edf3db4a4042bb76abf044e7c5de9c7d { 'aliquot_tag': 'ALQ_ce98666', 'gdc_sample_type': 'Primary Tumor' } C3L-00938.miRNA-Seq.T.hg38 C3L-00938 UCEC miRNA-Seq tumor CPT0016260009 dffd83fd-efde-4b43-9544-eb226f1c4186_mirnaseq_gdc_realn.bam 347228868 BAM harmonized CPTAC3 c0964842-3204-4180-9eed-223c597697f3 b500ca8c307d1f10509c25831b5bd5cd { 'aliquot_tag': 'ALQ_ce98666', 'gdc_sample_type': 'Primary Tumor' } C3L-00938.RNA-Seq.chimeric.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016260009 d8469b08-24f1-468d-b56d-be0137af664c.rna_seq.chimeric.gdc_realn.bam 54848196 BAM chimeric harmonized CPTAC3 ebf23fd0-5fd1-4a04-8af0-f777e1ca09b1 f541b5035b93b7d24eaac2905d8a38ec { 'aliquot_tag': 'ALQ_ce98666', 'gdc_sample_type': 'Primary Tumor' } -C3L-00938.RNA-Seq.genomic.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016260009 d8469b08-24f1-468d-b56d-be0137af664c.rna_seq.genomic.gdc_realn.bam 7384677369 BAM genomic harmonized CPTAC3 24d36cf2-243a-45d6-8c86-c2fb63e474b8 2067df00570a1502fdf17b9b7d4e7f19 { 'aliquot_tag': 'ALQ_ce98666', 'gdc_sample_type': 'Primary Tumor' } -C3L-00938.RNA-Seq.R1_L001.T C3L-00938 UCEC RNA-Seq tumor CPT0016260009 170818_UNC32-K00270_0051_BHLCCHBBXX_CCGTCC_S3_L001_R1_001.fastq.gz 3539868300 FASTQ R1_L001 unaligned CPTAC3 893adafa-41f8-4469-9c19-4b3c91b82e20 a948e6ab716698a9f4663533687c1ad7 { 'aliquot_tag': 'ALQ_ce98666', 'gdc_sample_type': 'Primary Tumor' } -C3L-00938.RNA-Seq.R1_.T C3L-00938 UCEC RNA-Seq tumor CPT0016280001 20210714_P1_A2_WB7988_plate1_S2_R1_001.fastq.gz 6623175677 FASTQ R1_ unaligned CPTAC3 5dd1c5e5-3c23-4f23-af78-4352f0117659 7869b1643a8dfc599e8f56dbc7e46ef4 { 'aliquot_tag': 'ALQ_bd02b035', 'gdc_sample_type': 'Primary Tumor' } -C3L-00938.RNA-Seq.R2_L001.T C3L-00938 UCEC RNA-Seq tumor CPT0016260009 170818_UNC32-K00270_0051_BHLCCHBBXX_CCGTCC_S3_L001_R2_001.fastq.gz 3696913766 FASTQ R2_L001 unaligned CPTAC3 aafe7ff3-0502-4175-a4a9-887ae8c2ec5b 839cb9653b389fe1ffac5b9bbb0d27eb { 'aliquot_tag': 'ALQ_ce98666', 'gdc_sample_type': 'Primary Tumor' } -C3L-00938.RNA-Seq.R2_.T C3L-00938 UCEC RNA-Seq tumor CPT0016280001 20210714_P1_A2_WB7988_plate1_S2_R2_001.fastq.gz 6889280939 FASTQ R2_ unaligned CPTAC3 fa6757e1-5383-4cf1-997e-22520a884d18 311b4350733824c87ecf391290b85183 { 'aliquot_tag': 'ALQ_bd02b035', 'gdc_sample_type': 'Primary Tumor' } +C3L-00938.RNA-Seq.chimeric.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016280001 d2181202-c737-48a2-828c-ca9c4b3b1b81.rna_seq.chimeric.gdc_realn.bam 207605213 BAM chimeric harmonized CPTAC3 5671c417-c941-41a4-8160-8f9397da3407 9b7531e9868b73bdd758c4721f5fb603 { 'aliquot_tag': 'ALQ_bd02b035', 'gdc_sample_type': 'Primary Tumor' } +C3L-00938.RNA-Seq.genomic.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016260009 d8469b08-24f1-468d-b56d-be0137af664c.rna_seq.genomic.gdc_realn.bam 7384677369 BAM genomic harmonized CPTAC3 4d42a9f7-c633-445a-922a-97dcca5f118d 2067df00570a1502fdf17b9b7d4e7f19 { 'aliquot_tag': 'ALQ_ce98666', 'gdc_sample_type': 'Primary Tumor' } +C3L-00938.RNA-Seq.genomic.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016280001 d2181202-c737-48a2-828c-ca9c4b3b1b81.rna_seq.genomic.gdc_realn.bam 9777313866 BAM genomic harmonized CPTAC3 942c2caa-277e-4d46-890d-1d4ee07ed79e 669e6a001eee062271ff0c734cf1d3fa { 'aliquot_tag': 'ALQ_bd02b035', 'gdc_sample_type': 'Primary Tumor' } +C3L-00938.RNA-Seq.R1_L001.T C3L-00938 UCEC RNA-Seq tumor CPT0016260009 170818_UNC32-K00270_0051_BHLCCHBBXX_CCGTCC_S3_L001_R1_001.fastq.gz 3539868300 FASTQ R1_L001 unaligned CPTAC3 893adafa-41f8-4469-9c19-4b3c91b82e20 a948e6ab716698a9f4663533687c1ad7 { 'aliquot_tag': 'ALQ_ce98666', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00938.RNA-Seq.R2_L001.T C3L-00938 UCEC RNA-Seq tumor CPT0016260009 170818_UNC32-K00270_0051_BHLCCHBBXX_CCGTCC_S3_L001_R2_001.fastq.gz 3696913766 FASTQ R2_L001 unaligned CPTAC3 aafe7ff3-0502-4175-a4a9-887ae8c2ec5b 839cb9653b389fe1ffac5b9bbb0d27eb { 'aliquot_tag': 'ALQ_ce98666', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00938.RNA-Seq.T C3L-00938 UCEC RNA-Seq tumor CPT0016280001 20210714_P1_A2_WB7988_plate1_S2_R1_001.fastq.gz 6623175677 FASTQ unaligned CPTAC3 5dd1c5e5-3c23-4f23-af78-4352f0117659 7869b1643a8dfc599e8f56dbc7e46ef4 +C3L-00938.RNA-Seq.T C3L-00938 UCEC RNA-Seq tumor CPT0016280001 20210714_P1_A2_WB7988_plate1_S2_R2_001.fastq.gz 6889280939 FASTQ unaligned CPTAC3 fa6757e1-5383-4cf1-997e-22520a884d18 311b4350733824c87ecf391290b85183 C3L-00938.RNA-Seq.transcriptome.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016260009 d8469b08-24f1-468d-b56d-be0137af664c.rna_seq.transcriptome.gdc_realn.bam 10828986762 BAM transcriptome harmonized CPTAC3 afe2b31c-280f-4eb1-9a25-cd618ff5c0b0 43d518f9f8b6fb8afdf5cbfcfa2939b0 { 'aliquot_tag': 'ALQ_ce98666', 'gdc_sample_type': 'Primary Tumor' } +C3L-00938.RNA-Seq.transcriptome.T.hg38 C3L-00938 UCEC RNA-Seq tumor CPT0016280001 d2181202-c737-48a2-828c-ca9c4b3b1b81.rna_seq.transcriptome.gdc_realn.bam 5155121958 BAM transcriptome harmonized CPTAC3 666360c0-b2e5-4bc7-8a01-60a54cd7c6e7 bc864c3b0a5728f18354943d35ec7b39 { 'aliquot_tag': 'ALQ_bd02b035', 'gdc_sample_type': 'Primary Tumor' } C3L-00938.WGS.N C3L-00938 UCEC WGS blood_normal CPT0016330002 CPT0016330002.WholeGenome.RP-1303.bam 72234854172 BAM aligned CPTAC3 bbedd5fa-dc3f-4e76-91bc-01924c74d8e9 e4e1a4028572549a10ddb1c9ae1e9b9a { 'aliquot_tag': 'ALQ_9887033b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00938.WGS.N.hg38 C3L-00938 UCEC WGS blood_normal CPT0016330002 354aacf4-4f9f-4177-8882-d3f996822ad9_gdc_realn.bam 105008388487 BAM harmonized CPTAC3 382e74bf-0a8c-439e-95c7-88d8d22024fc 038db377db1f2f1a497942e48aabdd21 { 'aliquot_tag': 'ALQ_9887033b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00938.WGS.T C3L-00938 UCEC WGS tumor CPT0016260006 CPT0016260006.WholeGenome.RP-1303.bam 61957211213 BAM aligned CPTAC3 3f25525d-4230-4c07-8d73-73907f1d3dec d8ad87fb0178341dc62671f83a012402 { 'aliquot_tag': 'ALQ_9c569bf7', 'gdc_sample_type': 'Primary Tumor' } @@ -4571,12 +5061,15 @@ C3L-00942.MethArray.Red.T C3L-00942 UCEC Methylation Array tumor CPT0016830006 2 C3L-00942.miRNA-Seq.T C3L-00942 UCEC miRNA-Seq tumor CPT0016830009 180924_UNC31-K00269_0154_AHWTMLBBXX_GACGAC_S31_L002_R1_001.unaln.bam 206696570 BAM unaligned CPTAC3 d4a5b4f8-3430-4899-b34d-44f0871a1b3e 9c7894a5ee3bd31b83f470e616f764a8 { 'aliquot_tag': 'ALQ_65922a70', 'gdc_sample_type': 'Primary Tumor' } C3L-00942.miRNA-Seq.T.hg38 C3L-00942 UCEC miRNA-Seq tumor CPT0016830009 c92c29f2-7d8f-4e69-93f0-9b70035e1852_mirnaseq_gdc_realn.bam 230553897 BAM harmonized CPTAC3 642099d3-d13e-40a4-8f83-fb7fefa2f8fa 5f01a976eae785d908292405a72a2328 { 'aliquot_tag': 'ALQ_65922a70', 'gdc_sample_type': 'Primary Tumor' } C3L-00942.RNA-Seq.chimeric.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016830009 cf24ef2a-3ada-4db5-8405-99fcf08e69bd.rna_seq.chimeric.gdc_realn.bam 59797038 BAM chimeric harmonized CPTAC3 4c06fc88-57f0-4704-b27c-3c8a3863a46d c727a146985af3eeb43815a979b59d7d { 'aliquot_tag': 'ALQ_65922a70', 'gdc_sample_type': 'Primary Tumor' } -C3L-00942.RNA-Seq.genomic.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016830009 cf24ef2a-3ada-4db5-8405-99fcf08e69bd.rna_seq.genomic.gdc_realn.bam 6378649257 BAM genomic harmonized CPTAC3 43ce687c-e99e-46f9-a43c-abb4c83104ea 0d4b2b5cd4219e1f96b4adf7d5eaaf50 { 'aliquot_tag': 'ALQ_65922a70', 'gdc_sample_type': 'Primary Tumor' } -C3L-00942.RNA-Seq.R1_L008.T C3L-00942 UCEC RNA-Seq tumor CPT0016830009 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L008_R1_001.fastq.gz 2896353667 FASTQ R1_L008 unaligned CPTAC3 34b5b547-c104-4c3b-b809-8c5fc7bf841d 1ad17193bed47fd521691cdd5039d879 { 'aliquot_tag': 'ALQ_65922a70', 'gdc_sample_type': 'Primary Tumor' } -C3L-00942.RNA-Seq.R1_.T C3L-00942 UCEC RNA-Seq tumor CPT0016870001 20210714_P1_H7_WB7988_plate1_S90_R1_001.fastq.gz 5974470498 FASTQ R1_ unaligned CPTAC3 c60ad6c9-1351-437e-943a-a9cd15498bb0 d6c4c360a49a1aa1354d5da8312ad7a4 { 'aliquot_tag': 'ALQ_9ec90482', 'gdc_sample_type': 'Primary Tumor' } -C3L-00942.RNA-Seq.R2_L008.T C3L-00942 UCEC RNA-Seq tumor CPT0016830009 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L008_R2_001.fastq.gz 3169457788 FASTQ R2_L008 unaligned CPTAC3 54fe3f69-db4c-4bb1-bfe6-957aab9aaf4b e3ad151853b6a56504b10b014ee3bbe4 { 'aliquot_tag': 'ALQ_65922a70', 'gdc_sample_type': 'Primary Tumor' } -C3L-00942.RNA-Seq.R2_.T C3L-00942 UCEC RNA-Seq tumor CPT0016870001 20210714_P1_H7_WB7988_plate1_S90_R2_001.fastq.gz 6247733754 FASTQ R2_ unaligned CPTAC3 ce02755a-7232-4c6f-a022-9db0389308c5 7c9005ed067e8f64d18789fa005b801a { 'aliquot_tag': 'ALQ_9ec90482', 'gdc_sample_type': 'Primary Tumor' } +C3L-00942.RNA-Seq.chimeric.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016870001 4d152490-edc9-42df-8917-6205ebba7fda.rna_seq.chimeric.gdc_realn.bam 247514354 BAM chimeric harmonized CPTAC3 0b581312-6e69-4eed-80a4-ab576baa5191 e60fc701eea6f35d49dea831df408f4c { 'aliquot_tag': 'ALQ_9ec90482', 'gdc_sample_type': 'Primary Tumor' } +C3L-00942.RNA-Seq.genomic.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016830009 cf24ef2a-3ada-4db5-8405-99fcf08e69bd.rna_seq.genomic.gdc_realn.bam 6378649257 BAM genomic harmonized CPTAC3 c6d643ec-26da-41e8-a5e4-672cb791ed9f 0d4b2b5cd4219e1f96b4adf7d5eaaf50 { 'aliquot_tag': 'ALQ_65922a70', 'gdc_sample_type': 'Primary Tumor' } +C3L-00942.RNA-Seq.genomic.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016870001 4d152490-edc9-42df-8917-6205ebba7fda.rna_seq.genomic.gdc_realn.bam 9832406211 BAM genomic harmonized CPTAC3 8f11b9d5-71f5-47b4-87fe-1baf46ddefad 3799f86cfba8ccdef3320a8d141a3f40 { 'aliquot_tag': 'ALQ_9ec90482', 'gdc_sample_type': 'Primary Tumor' } +C3L-00942.RNA-Seq.R1_L008.T C3L-00942 UCEC RNA-Seq tumor CPT0016830009 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L008_R1_001.fastq.gz 2896353667 FASTQ R1_L008 unaligned CPTAC3 34b5b547-c104-4c3b-b809-8c5fc7bf841d 1ad17193bed47fd521691cdd5039d879 { 'aliquot_tag': 'ALQ_65922a70', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00942.RNA-Seq.R2_L008.T C3L-00942 UCEC RNA-Seq tumor CPT0016830009 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L008_R2_001.fastq.gz 3169457788 FASTQ R2_L008 unaligned CPTAC3 54fe3f69-db4c-4bb1-bfe6-957aab9aaf4b e3ad151853b6a56504b10b014ee3bbe4 { 'aliquot_tag': 'ALQ_65922a70', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-00942.RNA-Seq.T C3L-00942 UCEC RNA-Seq tumor CPT0016870001 20210714_P1_H7_WB7988_plate1_S90_R1_001.fastq.gz 5974470498 FASTQ unaligned CPTAC3 c60ad6c9-1351-437e-943a-a9cd15498bb0 d6c4c360a49a1aa1354d5da8312ad7a4 +C3L-00942.RNA-Seq.T C3L-00942 UCEC RNA-Seq tumor CPT0016870001 20210714_P1_H7_WB7988_plate1_S90_R2_001.fastq.gz 6247733754 FASTQ unaligned CPTAC3 ce02755a-7232-4c6f-a022-9db0389308c5 7c9005ed067e8f64d18789fa005b801a C3L-00942.RNA-Seq.transcriptome.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016830009 cf24ef2a-3ada-4db5-8405-99fcf08e69bd.rna_seq.transcriptome.gdc_realn.bam 7517137242 BAM transcriptome harmonized CPTAC3 52f06d64-9236-4b15-8644-6479d2deeb15 a6692ac855c5012c06515edc0397b3dd { 'aliquot_tag': 'ALQ_65922a70', 'gdc_sample_type': 'Primary Tumor' } +C3L-00942.RNA-Seq.transcriptome.T.hg38 C3L-00942 UCEC RNA-Seq tumor CPT0016870001 4d152490-edc9-42df-8917-6205ebba7fda.rna_seq.transcriptome.gdc_realn.bam 4125085670 BAM transcriptome harmonized CPTAC3 e37f60b9-63f1-4a6d-9752-f0876f6dc322 5c2ecd5519aa189a160947cb5be2a0c9 { 'aliquot_tag': 'ALQ_9ec90482', 'gdc_sample_type': 'Primary Tumor' } C3L-00942.WGS.N C3L-00942 UCEC WGS blood_normal CPT0016970001 CPT0016970001.WholeGenome.RP-1303.bam 94045928911 BAM aligned CPTAC3 699cb50e-8973-4018-b27f-e5ce28faf4c4 671945127ca0494db87ac9a84274d88a { 'aliquot_tag': 'ALQ_5595d727', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00942.WGS.N.hg38 C3L-00942 UCEC WGS blood_normal CPT0016970001 3bf4671c-36c5-4987-a7f4-7afefe6422cf_gdc_realn.bam 138875632087 BAM harmonized CPTAC3 e1b5b9a4-609d-4bb6-a61e-c0c9e499f9ef 88564a3c2759e1788fb02a580df25cb3 { 'aliquot_tag': 'ALQ_5595d727', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00942.WGS.T C3L-00942 UCEC WGS tumor CPT0016830006 CPT0016830006.WholeGenome.RP-1303.bam 76115022922 BAM aligned CPTAC3 6c9a46b8-8e19-48dc-baa2-4822c8d913a4 2ee0e72b196a2fe05c30898071969460 { 'aliquot_tag': 'ALQ_f52d37e1', 'gdc_sample_type': 'Primary Tumor' } @@ -4589,13 +5082,16 @@ C3L-00943.MethArray.Green.T C3L-00943 UCEC Methylation Array tumor CPT0086090009 C3L-00943.MethArray.Red.T C3L-00943 UCEC Methylation Array tumor CPT0086090009 202234380058_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 5627ddc3-7600-4858-a215-dbcb4b1bccdb 690a1326d272150b7c0ae8aa1f36023e { 'aliquot_tag': 'ALQ_dc3eab97', 'gdc_sample_type': 'Primary Tumor' } C3L-00943.miRNA-Seq.T C3L-00943 UCEC miRNA-Seq tumor CPT0086090006 180724_UNC32-K00270_0106_BHWK3MBBXX_GATCAG_S32_L008_R1_001.unaln.bam 255536402 BAM unaligned CPTAC3 3c917f5b-8192-4e22-97d3-1ae1cd15285f 2d49a8d111dcb0d70d8fb01752e6b26a { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor' } C3L-00943.miRNA-Seq.T.hg38 C3L-00943 UCEC miRNA-Seq tumor CPT0086090006 07fdaf0d-a052-477e-ad56-a585a813b0c9_mirnaseq_gdc_realn.bam 276430120 BAM harmonized CPTAC3 8b3fe42a-3875-4754-b748-c84ed8d3c4db 2dcf6ccbb04c35baf02e816b2eed0309 { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor' } -C3L-00943.RNA-Seq.chimeric.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 fe18b5c0-ebf4-4144-ab93-c37d63e13a66.rna_seq.chimeric.gdc_realn.bam 70315850 BAM chimeric harmonized CPTAC3 5b7f0704-90b5-4cd0-93af-b0bcdcbcfa93 6f021189d5edefc0236f16303b0f7373 { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor' } -C3L-00943.RNA-Seq.genomic.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 fe18b5c0-ebf4-4144-ab93-c37d63e13a66.rna_seq.genomic.gdc_realn.bam 7144363953 BAM genomic harmonized CPTAC3 098b7523-ffd5-45e3-8fc8-04a87074e194 5f57ed73862477cdfb779bdfce4443e8 { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor' } -C3L-00943.RNA-Seq.R1_L003.T C3L-00943 UCEC RNA-Seq tumor CPT0086090006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L003_R1_001.fastq.gz 3588825985 FASTQ R1_L003 unaligned CPTAC3 4e6d387e-8645-431c-b5ff-74e4a39bed90 d947dcc47a7d44183ec92821415e8123 { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor' } -C3L-00943.RNA-Seq.R1_.T C3L-00943 UCEC RNA-Seq tumor CPT0086070001 20210729_P3_G8_WB7988-Plate3_S80_R1_001.fastq.gz 7371117167 FASTQ R1_ unaligned CPTAC3 12c5191b-bf12-4fa8-9e15-497e520d35dd b0b230b12c9a6d5f3c3737f91a596341 { 'aliquot_tag': 'ALQ_6dd59dc4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00943.RNA-Seq.R2_L003.T C3L-00943 UCEC RNA-Seq tumor CPT0086090006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L003_R2_001.fastq.gz 3982335018 FASTQ R2_L003 unaligned CPTAC3 61c01c7a-0467-4ea4-ab1f-6f572386b121 3524ee9720bb38bdcac9020fec5816bf { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor' } -C3L-00943.RNA-Seq.R2_.T C3L-00943 UCEC RNA-Seq tumor CPT0086070001 20210729_P3_G8_WB7988-Plate3_S80_R2_001.fastq.gz 7602330886 FASTQ R2_ unaligned CPTAC3 00c92a65-49da-4f88-b983-6262fcb6f5cf a691e643e85cddfe82cf54adb0ad8d8d { 'aliquot_tag': 'ALQ_6dd59dc4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00943.RNA-Seq.transcriptome.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 fe18b5c0-ebf4-4144-ab93-c37d63e13a66.rna_seq.transcriptome.gdc_realn.bam 8302207876 BAM transcriptome harmonized CPTAC3 bbe1a1d0-248a-44f8-a857-14428a35d8cb 1bc8319c10db99601e07471071d5c787 { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor' } +C3L-00943.RNA-Seq.chimeric.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086070001 22752644-b54f-4e64-a2ba-494f9bf5871c.rna_seq.chimeric.gdc_realn.bam 327480248 BAM chimeric harmonized CPTAC3 d3088620-dc05-4a60-a55f-baec5770e4f0 a6ffc6370dce0f3a6f47fdf897f86b8f { 'aliquot_tag': 'ALQ_6dd59dc4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00943.RNA-Seq.chimeric.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 bc0734c2-7509-4ced-b49e-ef77f510ecd4.rna_seq.chimeric.gdc_realn.bam 70305438 BAM chimeric harmonized CPTAC3 c721f5f5-cd6b-4d48-8be9-4d1e50eae3d9 df6ac955f904a79c477c80326002d106 { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor' } +C3L-00943.RNA-Seq.genomic.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086070001 22752644-b54f-4e64-a2ba-494f9bf5871c.rna_seq.genomic.gdc_realn.bam 11251318137 BAM genomic harmonized CPTAC3 5e9e74e3-9d5c-4d02-8bbe-be948424c2cf 577b468e7a5c0636b2813f9466674700 { 'aliquot_tag': 'ALQ_6dd59dc4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00943.RNA-Seq.genomic.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 bc0734c2-7509-4ced-b49e-ef77f510ecd4.rna_seq.genomic.gdc_realn.bam 7145458617 BAM genomic harmonized CPTAC3 b2d8644b-9bf6-43a3-8285-e274b405f3f7 8bd11af06d6d4820142d41c1c57507ae { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor' } +C3L-00943.RNA-Seq.R1_L003.T C3L-00943 UCEC RNA-Seq tumor CPT0086090006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L003_R1_001.fastq.gz 3588825985 FASTQ R1_L003 unaligned CPTAC3 4e6d387e-8645-431c-b5ff-74e4a39bed90 d947dcc47a7d44183ec92821415e8123 { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00943.RNA-Seq.R2_L003.T C3L-00943 UCEC RNA-Seq tumor CPT0086090006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L003_R2_001.fastq.gz 3982335018 FASTQ R2_L003 unaligned CPTAC3 61c01c7a-0467-4ea4-ab1f-6f572386b121 3524ee9720bb38bdcac9020fec5816bf { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00943.RNA-Seq.T C3L-00943 UCEC RNA-Seq tumor CPT0086070001 20210729_P3_G8_WB7988-Plate3_S80_R1_001.fastq.gz 7371117167 FASTQ unaligned CPTAC3 12c5191b-bf12-4fa8-9e15-497e520d35dd b0b230b12c9a6d5f3c3737f91a596341 +C3L-00943.RNA-Seq.T C3L-00943 UCEC RNA-Seq tumor CPT0086070001 20210729_P3_G8_WB7988-Plate3_S80_R2_001.fastq.gz 7602330886 FASTQ unaligned CPTAC3 00c92a65-49da-4f88-b983-6262fcb6f5cf a691e643e85cddfe82cf54adb0ad8d8d +C3L-00943.RNA-Seq.transcriptome.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086070001 22752644-b54f-4e64-a2ba-494f9bf5871c.rna_seq.transcriptome.gdc_realn.bam 4781371295 BAM transcriptome harmonized CPTAC3 334fbce9-812f-4e83-8fd0-d5c0840bcc66 c8141661700e47cad6fed5ae3fc15f72 { 'aliquot_tag': 'ALQ_6dd59dc4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00943.RNA-Seq.transcriptome.T.hg38 C3L-00943 UCEC RNA-Seq tumor CPT0086090006 bc0734c2-7509-4ced-b49e-ef77f510ecd4.rna_seq.transcriptome.gdc_realn.bam 9567662221 BAM transcriptome harmonized CPTAC3 169779ad-bb4e-406e-8ed0-a02fed44ca1a b673816d80602bdedd951dc1402e9ef3 { 'aliquot_tag': 'ALQ_4c81b606', 'gdc_sample_type': 'Primary Tumor' } C3L-00943.WGS.N C3L-00943 UCEC WGS blood_normal CPT0086140002 CPT0086140002.WholeGenome.RP-1303.bam 62746150540 BAM aligned CPTAC3 97384739-e8d4-40a9-a50f-33874596b8a3 47e47f94b292a067d2167c8615ddc2fc { 'aliquot_tag': 'ALQ_7820650b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00943.WGS.N.hg38 C3L-00943 UCEC WGS blood_normal CPT0086140002 9a358cdb-35b4-4339-8210-04b5286ab070_wgs_gdc_realn.bam 92031799752 BAM harmonized CPTAC3 af343e31-2784-4d31-bc05-9d3b53d1f04e f717ef7c28413fad94af630edec6a9f2 { 'aliquot_tag': 'ALQ_7820650b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00943.WGS.T C3L-00943 UCEC WGS tumor CPT0086090009 CPT0086090009.WholeGenome.RP-1303.bam 55812238224 BAM aligned CPTAC3 07a4aa7f-17c6-4e24-a832-43f97963fd35 616a31583d860e5e9af5a2f247d35f85 { 'aliquot_tag': 'ALQ_dc3eab97', 'gdc_sample_type': 'Primary Tumor' } @@ -4609,12 +5105,15 @@ C3L-00946.MethArray.Red.T C3L-00946 UCEC Methylation Array tumor CPT0027520009 2 C3L-00946.miRNA-Seq.T C3L-00946 UCEC miRNA-Seq tumor CPT0027520006 180924_UNC31-K00269_0154_AHWTMLBBXX_CCGTCC_S15_L001_R1_001.unaln.bam 209047356 BAM unaligned CPTAC3 7cd5384f-0fd0-4407-a9f7-2cdbdfdca618 33b90713d991e24f3ad38e7e616dc537 { 'aliquot_tag': 'ALQ_5c2b01d8', 'gdc_sample_type': 'Primary Tumor' } C3L-00946.miRNA-Seq.T.hg38 C3L-00946 UCEC miRNA-Seq tumor CPT0027520006 0540fe96-6ec6-45a9-a48c-6675ca9f47a6_mirnaseq_gdc_realn.bam 233739284 BAM harmonized CPTAC3 31e8c244-42b6-4ceb-b328-683034cf8d8b e24539950342a52c1e40952e136fa66e { 'aliquot_tag': 'ALQ_5c2b01d8', 'gdc_sample_type': 'Primary Tumor' } C3L-00946.RNA-Seq.chimeric.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027520006 f63cdc37-8e7a-4d68-93c5-7bd3dddd8794.rna_seq.chimeric.gdc_realn.bam 135103244 BAM chimeric harmonized CPTAC3 939cd22e-4d5b-4dab-a1b1-78aae8f7cb1f 0bf5878120207867d44c2c1a634ba02e { 'aliquot_tag': 'ALQ_5c2b01d8', 'gdc_sample_type': 'Primary Tumor' } +C3L-00946.RNA-Seq.chimeric.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027540001 e158abd0-6fdc-4e06-89cb-824a123e88b7.rna_seq.chimeric.gdc_realn.bam 283930672 BAM chimeric harmonized CPTAC3 39b99730-da5e-4432-8089-bd8d4f656890 7f236a2f57b6ccb809d3004d66bce08c { 'aliquot_tag': 'ALQ_4d0f61db', 'gdc_sample_type': 'Primary Tumor' } C3L-00946.RNA-Seq.genomic.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027520006 f63cdc37-8e7a-4d68-93c5-7bd3dddd8794.rna_seq.genomic.gdc_realn.bam 11524076004 BAM genomic harmonized CPTAC3 cca4f58c-0f22-4a5b-9abb-6cc752be7630 a16cfd4d09eedd559abff78f67387a2a { 'aliquot_tag': 'ALQ_5c2b01d8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00946.RNA-Seq.R1_L001.T C3L-00946 UCEC RNA-Seq tumor CPT0027520006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATCACG_S2_L001_R1_001.fastq.gz 5950419367 FASTQ R1_L001 unaligned CPTAC3 dd5912cb-695c-487b-9267-291f8ebb54bb 1fcff343eead4d530f98ef15b90def44 { 'aliquot_tag': 'ALQ_5c2b01d8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00946.RNA-Seq.R1_.T C3L-00946 UCEC RNA-Seq tumor CPT0027540001 20210723_P2_H5_WB7988-plate2_S89_R1_001.fastq.gz 6505326446 FASTQ R1_ unaligned CPTAC3 ac52d771-37f1-4899-9e00-0a6248c37e33 c2053969ea9fd6dbddc07d805fff56ea { 'aliquot_tag': 'ALQ_4d0f61db', 'gdc_sample_type': 'Primary Tumor' } -C3L-00946.RNA-Seq.R2_L001.T C3L-00946 UCEC RNA-Seq tumor CPT0027520006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATCACG_S2_L001_R2_001.fastq.gz 5558684265 FASTQ R2_L001 unaligned CPTAC3 39a421b8-2826-44af-8ee6-af72e9a27cfa c96c6726f5d433105231d268e6354252 { 'aliquot_tag': 'ALQ_5c2b01d8', 'gdc_sample_type': 'Primary Tumor' } -C3L-00946.RNA-Seq.R2_.T C3L-00946 UCEC RNA-Seq tumor CPT0027540001 20210723_P2_H5_WB7988-plate2_S89_R2_001.fastq.gz 6663983224 FASTQ R2_ unaligned CPTAC3 21b6d4b8-a3e8-47e3-8970-0eec3c5f3c9b f47cc602429af43bf8870aa28490c0f6 { 'aliquot_tag': 'ALQ_4d0f61db', 'gdc_sample_type': 'Primary Tumor' } +C3L-00946.RNA-Seq.genomic.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027540001 e158abd0-6fdc-4e06-89cb-824a123e88b7.rna_seq.genomic.gdc_realn.bam 11664465795 BAM genomic harmonized CPTAC3 17b47546-cb1e-4c0a-b695-578e947f7816 86f4eb86d027855941b6d273da2396f9 { 'aliquot_tag': 'ALQ_4d0f61db', 'gdc_sample_type': 'Primary Tumor' } +C3L-00946.RNA-Seq.R1_L001.T C3L-00946 UCEC RNA-Seq tumor CPT0027520006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATCACG_S2_L001_R1_001.fastq.gz 5950419367 FASTQ R1_L001 unaligned CPTAC3 dd5912cb-695c-487b-9267-291f8ebb54bb 1fcff343eead4d530f98ef15b90def44 { 'aliquot_tag': 'ALQ_5c2b01d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00946.RNA-Seq.R2_L001.T C3L-00946 UCEC RNA-Seq tumor CPT0027520006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATCACG_S2_L001_R2_001.fastq.gz 5558684265 FASTQ R2_L001 unaligned CPTAC3 39a421b8-2826-44af-8ee6-af72e9a27cfa c96c6726f5d433105231d268e6354252 { 'aliquot_tag': 'ALQ_5c2b01d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00946.RNA-Seq.T C3L-00946 UCEC RNA-Seq tumor CPT0027540001 20210723_P2_H5_WB7988-plate2_S89_R1_001.fastq.gz 6505326446 FASTQ unaligned CPTAC3 ac52d771-37f1-4899-9e00-0a6248c37e33 c2053969ea9fd6dbddc07d805fff56ea +C3L-00946.RNA-Seq.T C3L-00946 UCEC RNA-Seq tumor CPT0027540001 20210723_P2_H5_WB7988-plate2_S89_R2_001.fastq.gz 6663983224 FASTQ unaligned CPTAC3 21b6d4b8-a3e8-47e3-8970-0eec3c5f3c9b f47cc602429af43bf8870aa28490c0f6 C3L-00946.RNA-Seq.transcriptome.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027520006 f63cdc37-8e7a-4d68-93c5-7bd3dddd8794.rna_seq.transcriptome.gdc_realn.bam 14962275384 BAM transcriptome harmonized CPTAC3 20fd7b28-1286-41c8-a07a-1b884cae5f24 d8c8ca1f3fe591e0da371d5016885466 { 'aliquot_tag': 'ALQ_5c2b01d8', 'gdc_sample_type': 'Primary Tumor' } +C3L-00946.RNA-Seq.transcriptome.T.hg38 C3L-00946 UCEC RNA-Seq tumor CPT0027540001 e158abd0-6fdc-4e06-89cb-824a123e88b7.rna_seq.transcriptome.gdc_realn.bam 4921456850 BAM transcriptome harmonized CPTAC3 baba9c67-4a3a-47d5-849e-b839006756e3 d22f70473b7354c49a9ccbc9bca4bcb1 { 'aliquot_tag': 'ALQ_4d0f61db', 'gdc_sample_type': 'Primary Tumor' } C3L-00946.WGS.N C3L-00946 UCEC WGS blood_normal CPT0027580002 CPT0027580002.WholeGenome.RP-1303.bam 62247276419 BAM aligned CPTAC3 b4dc461c-f9ee-4508-8954-382337fa1a8f 5faf1bb33ea21fcb9a9c7d4f0cca93ea { 'aliquot_tag': 'ALQ_11f6dd60', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00946.WGS.N.hg38 C3L-00946 UCEC WGS blood_normal CPT0027580002 e1096e9c-9941-455a-861b-af3afbfaf88d_gdc_realn.bam 90120362745 BAM harmonized CPTAC3 8b361ca4-6848-4ba3-9c16-5c2cf1872ff4 3736cb1ffe412e727aef25d4b76f04ce { 'aliquot_tag': 'ALQ_11f6dd60', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00946.WGS.T C3L-00946 UCEC WGS tumor CPT0027520009 CPT0027520009.WholeGenome.RP-1303.bam 57202953682 BAM aligned CPTAC3 4d5b4aee-3c6b-4dae-967e-72ca14c3a78c eaac5ce633ba3d7862b174ae91515c06 { 'aliquot_tag': 'ALQ_cc941c49', 'gdc_sample_type': 'Primary Tumor' } @@ -4628,12 +5127,15 @@ C3L-00947.MethArray.Red.T C3L-00947 UCEC Methylation Array tumor CPT0027420009 2 C3L-00947.miRNA-Seq.T C3L-00947 UCEC miRNA-Seq tumor CPT0027420006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATGTCA_S16_L001_R1_001.unaln.bam 172293814 BAM unaligned CPTAC3 aedbde74-6381-44dd-af70-4db06ef78383 f1ca742369d6d9faecf70b042e3816da { 'aliquot_tag': 'ALQ_9777d27d', 'gdc_sample_type': 'Primary Tumor' } C3L-00947.miRNA-Seq.T.hg38 C3L-00947 UCEC miRNA-Seq tumor CPT0027420006 916e0ee6-ebc5-4440-9998-f1a50281dc0e_mirnaseq_gdc_realn.bam 184179227 BAM harmonized CPTAC3 669d0afd-483a-4933-9259-5abb6d5ff387 8712f94ccc7381b720921112de89bf58 { 'aliquot_tag': 'ALQ_9777d27d', 'gdc_sample_type': 'Primary Tumor' } C3L-00947.RNA-Seq.chimeric.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027420006 3925a63a-fe3f-4aea-a45e-cab2790ed53e.rna_seq.chimeric.gdc_realn.bam 82170474 BAM chimeric harmonized CPTAC3 04ae95bc-a285-46b0-b94c-94956caf568d 1c357b02b8526c0f574db5aa160c9a89 { 'aliquot_tag': 'ALQ_9777d27d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00947.RNA-Seq.genomic.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027420006 3925a63a-fe3f-4aea-a45e-cab2790ed53e.rna_seq.genomic.gdc_realn.bam 9257848676 BAM genomic harmonized CPTAC3 30cb7f7f-bdea-4fbc-b367-a92749168682 c97b42fbc31ed71820532b34ed91cf71 { 'aliquot_tag': 'ALQ_9777d27d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00947.RNA-Seq.R1_L002.T C3L-00947 UCEC RNA-Seq tumor CPT0027420006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L002_R1_001.fastq.gz 5110657108 FASTQ R1_L002 unaligned CPTAC3 989082f5-abb2-4d47-a6b3-e3560b9b38d3 53c6cad957e16ec901de39e21bd50995 { 'aliquot_tag': 'ALQ_9777d27d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00947.RNA-Seq.R1_.T C3L-00947 UCEC RNA-Seq tumor CPT0027440001 20210723_P2_E7_WB7988-plate2_S55_R1_001.fastq.gz 6552628601 FASTQ R1_ unaligned CPTAC3 2464f4dd-d975-48f9-9c70-0d01c8325476 a3d52214d4925dc08ca2716f6ddeebe6 { 'aliquot_tag': 'ALQ_8653b27e', 'gdc_sample_type': 'Primary Tumor' } -C3L-00947.RNA-Seq.R2_L002.T C3L-00947 UCEC RNA-Seq tumor CPT0027420006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L002_R2_001.fastq.gz 5411220746 FASTQ R2_L002 unaligned CPTAC3 8d9b3ee8-b37d-4e67-856c-149dcd51f602 9a91285ca4406c7a3e01b672836d086f { 'aliquot_tag': 'ALQ_9777d27d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00947.RNA-Seq.R2_.T C3L-00947 UCEC RNA-Seq tumor CPT0027440001 20210723_P2_E7_WB7988-plate2_S55_R2_001.fastq.gz 6669345606 FASTQ R2_ unaligned CPTAC3 19e6b95f-827c-403d-bf30-e22dd7f47708 06570160bf4ca5db527d04df11fceeb9 { 'aliquot_tag': 'ALQ_8653b27e', 'gdc_sample_type': 'Primary Tumor' } +C3L-00947.RNA-Seq.chimeric.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027440001 5b5ae19f-dd3c-4569-98a7-6e713fa6a08b.rna_seq.chimeric.gdc_realn.bam 259508630 BAM chimeric harmonized CPTAC3 4f2bb531-e3aa-402a-9289-03a9ebcf9ba3 99b8b0fa721521b7749deae98a905a69 { 'aliquot_tag': 'ALQ_8653b27e', 'gdc_sample_type': 'Primary Tumor' } +C3L-00947.RNA-Seq.genomic.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027420006 3925a63a-fe3f-4aea-a45e-cab2790ed53e.rna_seq.genomic.gdc_realn.bam 9257848676 BAM genomic harmonized CPTAC3 73b1e3f2-d5ec-43b4-9648-b33c056bdb38 c97b42fbc31ed71820532b34ed91cf71 { 'aliquot_tag': 'ALQ_9777d27d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00947.RNA-Seq.genomic.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027440001 5b5ae19f-dd3c-4569-98a7-6e713fa6a08b.rna_seq.genomic.gdc_realn.bam 11209530702 BAM genomic harmonized CPTAC3 c35cc2ab-4e32-4383-b8a0-c6058a4d0f2d 44c9a834ec5d4a0d2a7e07fca8ca7f1b { 'aliquot_tag': 'ALQ_8653b27e', 'gdc_sample_type': 'Primary Tumor' } +C3L-00947.RNA-Seq.R1_L002.T C3L-00947 UCEC RNA-Seq tumor CPT0027420006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L002_R1_001.fastq.gz 5110657108 FASTQ R1_L002 unaligned CPTAC3 989082f5-abb2-4d47-a6b3-e3560b9b38d3 53c6cad957e16ec901de39e21bd50995 { 'aliquot_tag': 'ALQ_9777d27d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00947.RNA-Seq.R2_L002.T C3L-00947 UCEC RNA-Seq tumor CPT0027420006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L002_R2_001.fastq.gz 5411220746 FASTQ R2_L002 unaligned CPTAC3 8d9b3ee8-b37d-4e67-856c-149dcd51f602 9a91285ca4406c7a3e01b672836d086f { 'aliquot_tag': 'ALQ_9777d27d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00947.RNA-Seq.T C3L-00947 UCEC RNA-Seq tumor CPT0027440001 20210723_P2_E7_WB7988-plate2_S55_R1_001.fastq.gz 6552628601 FASTQ unaligned CPTAC3 2464f4dd-d975-48f9-9c70-0d01c8325476 a3d52214d4925dc08ca2716f6ddeebe6 +C3L-00947.RNA-Seq.T C3L-00947 UCEC RNA-Seq tumor CPT0027440001 20210723_P2_E7_WB7988-plate2_S55_R2_001.fastq.gz 6669345606 FASTQ unaligned CPTAC3 19e6b95f-827c-403d-bf30-e22dd7f47708 06570160bf4ca5db527d04df11fceeb9 C3L-00947.RNA-Seq.transcriptome.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027420006 3925a63a-fe3f-4aea-a45e-cab2790ed53e.rna_seq.transcriptome.gdc_realn.bam 12966401715 BAM transcriptome harmonized CPTAC3 01f4bf07-f31f-4b48-86e7-7189950d8ee0 9b5b1f6cf0c441314b6b78cca789def8 { 'aliquot_tag': 'ALQ_9777d27d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00947.RNA-Seq.transcriptome.T.hg38 C3L-00947 UCEC RNA-Seq tumor CPT0027440001 5b5ae19f-dd3c-4569-98a7-6e713fa6a08b.rna_seq.transcriptome.gdc_realn.bam 4667227382 BAM transcriptome harmonized CPTAC3 0f0f845a-3e2f-4240-a4b4-32661325fd31 ff6af52a19fb217fdc616f686fd12b2f { 'aliquot_tag': 'ALQ_8653b27e', 'gdc_sample_type': 'Primary Tumor' } C3L-00947.WGS.N C3L-00947 UCEC WGS blood_normal CPT0027480002 CPT0027480002.WholeGenome.RP-1303.bam 55317293102 BAM aligned CPTAC3 19785a4b-f66f-4abd-8cc2-ab14e8109fc2 8bfd398a91d172f5cf0c7ac09c4fdedc { 'aliquot_tag': 'ALQ_daaa0ec5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00947.WGS.N.hg38 C3L-00947 UCEC WGS blood_normal CPT0027480002 151447ea-0a29-4f5b-b2b5-c844ecd8e530_gdc_realn.bam 81089926362 BAM harmonized CPTAC3 f09df81d-7521-4c7f-ade2-c7c64f7f6146 0c837c6492f13ace6cff1668c62e8d2c { 'aliquot_tag': 'ALQ_daaa0ec5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00947.WGS.T C3L-00947 UCEC WGS tumor CPT0027420009 CPT0027420009.WholeGenome.RP-1303.bam 63014999039 BAM aligned CPTAC3 df70395e-da71-4a02-87ce-e79bb382caa2 2b6f280fb11e3b7ee43da06384b5d2e0 { 'aliquot_tag': 'ALQ_7c8cfec', 'gdc_sample_type': 'Primary Tumor' } @@ -4647,9 +5149,9 @@ C3L-00949.MethArray.Red.T C3L-00949 UCEC Methylation Array tumor CPT0016370006 2 C3L-00949.miRNA-Seq.T C3L-00949 UCEC miRNA-Seq tumor CPT0016370009 180924_UNC31-K00269_0154_AHWTMLBBXX_TAATCG_S30_L002_R1_001.unaln.bam 221452962 BAM unaligned CPTAC3 529c7573-c354-4f1c-9147-141fd25186df eb5882cf07a7579000a512feef51d7f0 { 'aliquot_tag': 'ALQ_fad57c73', 'gdc_sample_type': 'Primary Tumor' } C3L-00949.miRNA-Seq.T.hg38 C3L-00949 UCEC miRNA-Seq tumor CPT0016370009 d5d13eda-ff6a-438a-af78-ac34964bf567_mirnaseq_gdc_realn.bam 244702440 BAM harmonized CPTAC3 2bb636e5-2fce-4e76-b9b1-470455d37f81 500dd257ba1d3533f0c8c12097957b74 { 'aliquot_tag': 'ALQ_fad57c73', 'gdc_sample_type': 'Primary Tumor' } C3L-00949.RNA-Seq.chimeric.T.hg38 C3L-00949 UCEC RNA-Seq tumor CPT0016370009 161a4d97-48cf-46c4-b33b-315501a4c2fb.rna_seq.chimeric.gdc_realn.bam 51855651 BAM chimeric harmonized CPTAC3 029d1552-cd3b-4f2a-8e11-3be02d934820 3db3eabb8616e5a12973f106cb5970b3 { 'aliquot_tag': 'ALQ_fad57c73', 'gdc_sample_type': 'Primary Tumor' } -C3L-00949.RNA-Seq.genomic.T.hg38 C3L-00949 UCEC RNA-Seq tumor CPT0016370009 161a4d97-48cf-46c4-b33b-315501a4c2fb.rna_seq.genomic.gdc_realn.bam 6944574659 BAM genomic harmonized CPTAC3 5815987c-86db-43c2-90d2-6e431428f256 03da8998a24e400e10d3ed7d9120846a { 'aliquot_tag': 'ALQ_fad57c73', 'gdc_sample_type': 'Primary Tumor' } -C3L-00949.RNA-Seq.R1_L008.T C3L-00949 UCEC RNA-Seq tumor CPT0016370009 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L008_R1_001.fastq.gz 3317808630 FASTQ R1_L008 unaligned CPTAC3 acc81064-08f0-457b-9629-1bb742e4ceb6 cec89f2c90023f22c7b5a5578fb1c8f8 { 'aliquot_tag': 'ALQ_fad57c73', 'gdc_sample_type': 'Primary Tumor' } -C3L-00949.RNA-Seq.R2_L008.T C3L-00949 UCEC RNA-Seq tumor CPT0016370009 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L008_R2_001.fastq.gz 3611007600 FASTQ R2_L008 unaligned CPTAC3 1e750be5-488d-4a05-9c08-928700638328 2699aec1b8188078122714e85a954337 { 'aliquot_tag': 'ALQ_fad57c73', 'gdc_sample_type': 'Primary Tumor' } +C3L-00949.RNA-Seq.genomic.T.hg38 C3L-00949 UCEC RNA-Seq tumor CPT0016370009 161a4d97-48cf-46c4-b33b-315501a4c2fb.rna_seq.genomic.gdc_realn.bam 6944574659 BAM genomic harmonized CPTAC3 cd43b890-f398-4ec0-ade6-e517484509eb 03da8998a24e400e10d3ed7d9120846a { 'aliquot_tag': 'ALQ_fad57c73', 'gdc_sample_type': 'Primary Tumor' } +C3L-00949.RNA-Seq.R1_L008.T C3L-00949 UCEC RNA-Seq tumor CPT0016370009 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L008_R1_001.fastq.gz 3317808630 FASTQ R1_L008 unaligned CPTAC3 acc81064-08f0-457b-9629-1bb742e4ceb6 cec89f2c90023f22c7b5a5578fb1c8f8 { 'aliquot_tag': 'ALQ_fad57c73', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-00949.RNA-Seq.R2_L008.T C3L-00949 UCEC RNA-Seq tumor CPT0016370009 170823_UNC31-K00269_0075_AHLCW5BBXX_CAGATC_S5_L008_R2_001.fastq.gz 3611007600 FASTQ R2_L008 unaligned CPTAC3 1e750be5-488d-4a05-9c08-928700638328 2699aec1b8188078122714e85a954337 { 'aliquot_tag': 'ALQ_fad57c73', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-00949.RNA-Seq.transcriptome.T.hg38 C3L-00949 UCEC RNA-Seq tumor CPT0016370009 161a4d97-48cf-46c4-b33b-315501a4c2fb.rna_seq.transcriptome.gdc_realn.bam 8138050527 BAM transcriptome harmonized CPTAC3 64f4d299-38ab-4bea-8f8b-df361e54fbe3 5a7bb78b378bf2c253d99d1ae2265c60 { 'aliquot_tag': 'ALQ_fad57c73', 'gdc_sample_type': 'Primary Tumor' } C3L-00949.WGS.N C3L-00949 UCEC WGS blood_normal CPT0016440002 CPT0016440002.WholeGenome.RP-1303.bam 82245907149 BAM aligned CPTAC3 da40b327-c2d2-4b9b-9f0a-643e9705a431 6094f3ad0f6fb4d3d436c91b87260b4d { 'aliquot_tag': 'ALQ_37a2ef93', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00949.WGS.N.hg38 C3L-00949 UCEC WGS blood_normal CPT0016440002 ff9ecfd3-1cb1-4fbc-b644-7060d84c4df2_gdc_realn.bam 123260864011 BAM harmonized CPTAC3 bb4ccd90-f05f-48bc-b1bf-31420ea52bff 750639949f023e4a2d73b24ada90c7c1 { 'aliquot_tag': 'ALQ_37a2ef93', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4664,12 +5166,15 @@ C3L-00961.MethArray.Red.T C3L-00961 UCEC Methylation Array tumor CPT0027320009 2 C3L-00961.miRNA-Seq.T C3L-00961 UCEC miRNA-Seq tumor CPT0027320006 180924_UNC31-K00269_0154_AHWTMLBBXX_AGTTCC_S17_L001_R1_001.unaln.bam 212988736 BAM unaligned CPTAC3 8099e457-9d97-4562-901f-9684a0c2f382 547eebcd321b149879498ce1922f5b8a { 'aliquot_tag': 'ALQ_8a72e2c5', 'gdc_sample_type': 'Primary Tumor' } C3L-00961.miRNA-Seq.T.hg38 C3L-00961 UCEC miRNA-Seq tumor CPT0027320006 fe9075dd-a20e-4b0b-8af4-e964e6d13057_mirnaseq_gdc_realn.bam 235008497 BAM harmonized CPTAC3 eefb9752-6654-44b7-9870-6f955c1515d8 07572d5f05fe5d8bb7a92808ac740c6f { 'aliquot_tag': 'ALQ_8a72e2c5', 'gdc_sample_type': 'Primary Tumor' } C3L-00961.RNA-Seq.chimeric.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027320006 1178a292-fd1e-48f0-9004-ad2f0c7f2818.rna_seq.chimeric.gdc_realn.bam 71262395 BAM chimeric harmonized CPTAC3 06be8c4e-f81a-45ad-ad1b-2fffb4bedf5f 5ae922c5588e8fc27832cf1fb8bded2e { 'aliquot_tag': 'ALQ_8a72e2c5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00961.RNA-Seq.genomic.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027320006 1178a292-fd1e-48f0-9004-ad2f0c7f2818.rna_seq.genomic.gdc_realn.bam 8547994668 BAM genomic harmonized CPTAC3 87edee91-f537-4c4d-b534-281f462333cc 7f82499df2cdaa638b77a4ce2e54cf46 { 'aliquot_tag': 'ALQ_8a72e2c5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00961.RNA-Seq.R1_L002.T C3L-00961 UCEC RNA-Seq tumor CPT0027320006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L002_R1_001.fastq.gz 4938190260 FASTQ R1_L002 unaligned CPTAC3 339ad507-4d3e-4c9e-ae1c-5a207645cf9b 4d3b7b6a99a762b8ba3ccb26346f49cf { 'aliquot_tag': 'ALQ_8a72e2c5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00961.RNA-Seq.R1_.T C3L-00961 UCEC RNA-Seq tumor CPT0027340001 20210714_P1_D2_WB7988_plate1_S38_R1_001.fastq.gz 5095479961 FASTQ R1_ unaligned CPTAC3 f9cae9a1-a916-4a89-9381-65360e61bbcb e1d12fdb9868dc208bb94cd854871b24 { 'aliquot_tag': 'ALQ_9b5682c6', 'gdc_sample_type': 'Primary Tumor' } -C3L-00961.RNA-Seq.R2_L002.T C3L-00961 UCEC RNA-Seq tumor CPT0027320006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L002_R2_001.fastq.gz 5192890639 FASTQ R2_L002 unaligned CPTAC3 6af2d835-4e67-4d59-9cf9-da8f0d197f44 7b9d93fe7b35fde68b0b14b2e72c7705 { 'aliquot_tag': 'ALQ_8a72e2c5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00961.RNA-Seq.R2_.T C3L-00961 UCEC RNA-Seq tumor CPT0027340001 20210714_P1_D2_WB7988_plate1_S38_R2_001.fastq.gz 5294472018 FASTQ R2_ unaligned CPTAC3 1c4d29fb-ba85-44b4-bda6-e6873ba2e6a9 6be5584577c27c241e073e2c4c1baed2 { 'aliquot_tag': 'ALQ_9b5682c6', 'gdc_sample_type': 'Primary Tumor' } +C3L-00961.RNA-Seq.chimeric.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027340001 d3a0bf07-ecf1-45ae-aedd-82886e5ecf52.rna_seq.chimeric.gdc_realn.bam 179475928 BAM chimeric harmonized CPTAC3 7635e40c-1c63-42ba-998b-f90265dd952f d614407377218ee35e914ea085653cc0 { 'aliquot_tag': 'ALQ_9b5682c6', 'gdc_sample_type': 'Primary Tumor' } +C3L-00961.RNA-Seq.genomic.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027320006 1178a292-fd1e-48f0-9004-ad2f0c7f2818.rna_seq.genomic.gdc_realn.bam 8547994668 BAM genomic harmonized CPTAC3 d4945a21-7218-4289-8e9f-c1ec6890ac71 7f82499df2cdaa638b77a4ce2e54cf46 { 'aliquot_tag': 'ALQ_8a72e2c5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00961.RNA-Seq.genomic.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027340001 d3a0bf07-ecf1-45ae-aedd-82886e5ecf52.rna_seq.genomic.gdc_realn.bam 8192626608 BAM genomic harmonized CPTAC3 d22b0369-37e8-45ea-86df-d1db2591f637 ef35a414f02889c984513814efd74203 { 'aliquot_tag': 'ALQ_9b5682c6', 'gdc_sample_type': 'Primary Tumor' } +C3L-00961.RNA-Seq.R1_L002.T C3L-00961 UCEC RNA-Seq tumor CPT0027320006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L002_R1_001.fastq.gz 4938190260 FASTQ R1_L002 unaligned CPTAC3 339ad507-4d3e-4c9e-ae1c-5a207645cf9b 4d3b7b6a99a762b8ba3ccb26346f49cf { 'aliquot_tag': 'ALQ_8a72e2c5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00961.RNA-Seq.R2_L002.T C3L-00961 UCEC RNA-Seq tumor CPT0027320006 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L002_R2_001.fastq.gz 5192890639 FASTQ R2_L002 unaligned CPTAC3 6af2d835-4e67-4d59-9cf9-da8f0d197f44 7b9d93fe7b35fde68b0b14b2e72c7705 { 'aliquot_tag': 'ALQ_8a72e2c5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00961.RNA-Seq.T C3L-00961 UCEC RNA-Seq tumor CPT0027340001 20210714_P1_D2_WB7988_plate1_S38_R1_001.fastq.gz 5095479961 FASTQ unaligned CPTAC3 f9cae9a1-a916-4a89-9381-65360e61bbcb e1d12fdb9868dc208bb94cd854871b24 +C3L-00961.RNA-Seq.T C3L-00961 UCEC RNA-Seq tumor CPT0027340001 20210714_P1_D2_WB7988_plate1_S38_R2_001.fastq.gz 5294472018 FASTQ unaligned CPTAC3 1c4d29fb-ba85-44b4-bda6-e6873ba2e6a9 6be5584577c27c241e073e2c4c1baed2 C3L-00961.RNA-Seq.transcriptome.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027320006 1178a292-fd1e-48f0-9004-ad2f0c7f2818.rna_seq.transcriptome.gdc_realn.bam 13186227979 BAM transcriptome harmonized CPTAC3 92083679-d782-4662-bcf6-ef2f368d86aa 9b5819b1bb375c7b133d2db77d353047 { 'aliquot_tag': 'ALQ_8a72e2c5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00961.RNA-Seq.transcriptome.T.hg38 C3L-00961 UCEC RNA-Seq tumor CPT0027340001 d3a0bf07-ecf1-45ae-aedd-82886e5ecf52.rna_seq.transcriptome.gdc_realn.bam 3953062528 BAM transcriptome harmonized CPTAC3 94ca974c-9019-4bd0-9a21-757e1f996d9b ac97877a8cf06ee89db5df8e267f5251 { 'aliquot_tag': 'ALQ_9b5682c6', 'gdc_sample_type': 'Primary Tumor' } C3L-00961.WGS.N C3L-00961 UCEC WGS blood_normal CPT0027380002 CPT0027380002.WholeGenome.RP-1303.bam 57575239957 BAM aligned CPTAC3 653769e1-f0d2-4dce-a6a9-50e1cc4e8eb8 32c2d8185dd0f7405711be3d65cc820a { 'aliquot_tag': 'ALQ_c7af3e7d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00961.WGS.N.hg38 C3L-00961 UCEC WGS blood_normal CPT0027380002 2ebebf6f-5324-4914-b811-16b21e534c86_gdc_realn.bam 84725365572 BAM harmonized CPTAC3 7ede6f1d-f31a-4122-b9a4-efec55776a69 9df0331b6048403d2ec6d346daae70fc { 'aliquot_tag': 'ALQ_c7af3e7d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00961.WGS.T C3L-00961 UCEC WGS tumor CPT0027320009 CPT0027320009.WholeGenome.RP-1303.bam 66266176258 BAM aligned CPTAC3 03e4932b-6f46-45ab-a6f2-332ecb7fdfc4 681ab60530c0556a57d31816bb6e64a9 { 'aliquot_tag': 'ALQ_1acdff54', 'gdc_sample_type': 'Primary Tumor' } @@ -4680,22 +5185,25 @@ C3L-00961.WXS.T C3L-00961 UCEC WXS tumor CPT0027320009 CPT0027320009.WholeExome. C3L-00961.WXS.T.hg38 C3L-00961 UCEC WXS tumor CPT0027320009 56a0a87f-0053-436e-be1c-a0a3c975e19e_gdc_realn.bam 34761278162 BAM harmonized CPTAC3 266c147a-cbf1-4b6d-8bb7-2497f2ad9013 13663d7f7ced023c1dcb82a841ab8b63 { 'aliquot_tag': 'ALQ_1acdff54', 'gdc_sample_type': 'Primary Tumor' } C3L-00962.miRNA-Seq.T C3L-00962 UCEC miRNA-Seq tumor CPT0016680021 190508_UNC31-K00269_0215_BH7FYKBBXY_CTAGCT_S38_L002_R1_001.unaln.bam 386861758 BAM unaligned CPTAC3 1730f0aa-3cb4-43c6-920a-f097760e35c7 b563f4ceb25ce01a68d30eac065747bf { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor' } C3L-00962.miRNA-Seq.T.hg38 C3L-00962 UCEC miRNA-Seq tumor CPT0016680021 f5d78104-3d2f-4211-b445-4407c4eb18bd_mirnaseq_gdc_realn.bam 443899159 BAM harmonized CPTAC3 61c78bc2-2199-465f-b1b7-aaa1213defe6 6c15ef2423e2c10049037844cabff57f { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00962.RNA-Seq.chimeric.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 a7338241-a97c-493d-92b1-9efc086c120a.rna_seq.chimeric.gdc_realn.bam 37558583 BAM chimeric harmonized CPTAC3 d1630cee-082f-40b6-a4de-d5b3c3a175c1 4ea09ebe4b1363f131c2a663a99c142f { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00962.RNA-Seq.genomic.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 a7338241-a97c-493d-92b1-9efc086c120a.rna_seq.genomic.gdc_realn.bam 8032073904 BAM genomic harmonized CPTAC3 cef84c87-5971-479a-8d3b-96ecbdc17031 6d2bc23673edeba0ac8df0c5c3ec1d4a { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00962.RNA-Seq.R1_L006.T C3L-00962 UCEC RNA-Seq tumor CPT0016680021 190501_UNC31-K00269_0213_BH5JYFBBXY_CTACGACA-GAGTCCAA_S24_L006_R1_001.fastq.gz 3871623999 FASTQ R1_L006 unaligned CPTAC3 8b61732b-9c39-47e9-bdb2-944ac0f2c32d d184dd1b169d6f224d35113760b29a82 { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00962.RNA-Seq.R2_L006.T C3L-00962 UCEC RNA-Seq tumor CPT0016680021 190501_UNC31-K00269_0213_BH5JYFBBXY_CTACGACA-GAGTCCAA_S24_L006_R2_001.fastq.gz 4329264982 FASTQ R2_L006 unaligned CPTAC3 e7278e12-717f-48e4-a8ea-b52d1f793018 4d5626be2773cda2241f2cf41657e34b { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor' } -C3L-00962.RNA-Seq.transcriptome.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 a7338241-a97c-493d-92b1-9efc086c120a.rna_seq.transcriptome.gdc_realn.bam 9188045085 BAM transcriptome harmonized CPTAC3 37802bc3-0290-4f5b-bc9c-f551d7827192 274fe42ebf16b729843e0165d8193eb4 { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00962.RNA-Seq.chimeric.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 cc2e0059-df01-4744-97c6-75e378ca00ef.rna_seq.chimeric.gdc_realn.bam 37530634 BAM chimeric harmonized CPTAC3 d021d1ea-12e2-4b0a-ba31-e4424d58cf8d 29a7515773ff9d0b2fcd09dbce9cc1c1 { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00962.RNA-Seq.genomic.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 cc2e0059-df01-4744-97c6-75e378ca00ef.rna_seq.genomic.gdc_realn.bam 8033278072 BAM genomic harmonized CPTAC3 1388d22d-2b34-4d1d-a8e6-aba74f9f4b00 0c4b20e607fc1490398dba44ea819959 { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor' } +C3L-00962.RNA-Seq.R1_L006.T C3L-00962 UCEC RNA-Seq tumor CPT0016680021 190501_UNC31-K00269_0213_BH5JYFBBXY_CTACGACA-GAGTCCAA_S24_L006_R1_001.fastq.gz 3871623999 FASTQ R1_L006 unaligned CPTAC3 8b61732b-9c39-47e9-bdb2-944ac0f2c32d d184dd1b169d6f224d35113760b29a82 { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00962.RNA-Seq.R2_L006.T C3L-00962 UCEC RNA-Seq tumor CPT0016680021 190501_UNC31-K00269_0213_BH5JYFBBXY_CTACGACA-GAGTCCAA_S24_L006_R2_001.fastq.gz 4329264982 FASTQ R2_L006 unaligned CPTAC3 e7278e12-717f-48e4-a8ea-b52d1f793018 4d5626be2773cda2241f2cf41657e34b { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-00962.RNA-Seq.transcriptome.T.hg38 C3L-00962 UCEC RNA-Seq tumor CPT0016680021 cc2e0059-df01-4744-97c6-75e378ca00ef.rna_seq.transcriptome.gdc_realn.bam 10598535450 BAM transcriptome harmonized CPTAC3 0e578f05-cf30-4a1a-b694-b72196ffa961 2ed785f63c0673ab8bf147404dc01320 { 'aliquot_tag': 'ALQ_14a590a1', 'gdc_sample_type': 'Primary Tumor' } C3L-00963.MethArray.Green.T C3L-00963 UCEC Methylation Array tumor CPT0016490006 202163550007_R02C01_Grn.idat 13676228 IDAT Green NA CPTAC3 eefcb0a2-3e9f-403e-b957-1869dc3205c0 0627ebc13840e3fc60462d43290aea51 { 'aliquot_tag': 'ALQ_c85fef3b', 'gdc_sample_type': 'Primary Tumor' } C3L-00963.MethArray.Red.T C3L-00963 UCEC Methylation Array tumor CPT0016490006 202163550007_R02C01_Red.idat 13676228 IDAT Red NA CPTAC3 f9fe6baf-fddd-4b17-a545-198c6717e92a 348745e27ff737e41398af0c5ed36594 { 'aliquot_tag': 'ALQ_c85fef3b', 'gdc_sample_type': 'Primary Tumor' } C3L-00963.miRNA-Seq.T C3L-00963 UCEC miRNA-Seq tumor CPT0016490009 180924_UNC31-K00269_0154_AHWTMLBBXX_TACAGC_S29_L002_R1_001.unaln.bam 310633478 BAM unaligned CPTAC3 0646f0bb-c0e5-4311-9d4a-e202a1b037cb c5a0b24c3b989b3eacccd4f2aaeaa223 { 'aliquot_tag': 'ALQ_58e0f2aa', 'gdc_sample_type': 'Primary Tumor' } C3L-00963.miRNA-Seq.T.hg38 C3L-00963 UCEC miRNA-Seq tumor CPT0016490009 88aa1c93-b21b-4c2a-989e-e7f1368ebed7_mirnaseq_gdc_realn.bam 339423165 BAM harmonized CPTAC3 c72873ad-9dbd-4969-911f-b48f1f1ef185 c30e3f1d4ca7ade863255eb9c5a06714 { 'aliquot_tag': 'ALQ_58e0f2aa', 'gdc_sample_type': 'Primary Tumor' } C3L-00963.RNA-Seq.chimeric.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016490009 09d4e092-9582-405d-a053-1fa9200df0bc.rna_seq.chimeric.gdc_realn.bam 60165141 BAM chimeric harmonized CPTAC3 24ff4bbc-4124-4607-8927-5fe91f7e996f 9c2e96c1f6ffed0f1853d17edf9f4dba { 'aliquot_tag': 'ALQ_58e0f2aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00963.RNA-Seq.genomic.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016490009 09d4e092-9582-405d-a053-1fa9200df0bc.rna_seq.genomic.gdc_realn.bam 8452431023 BAM genomic harmonized CPTAC3 30ce9631-eb30-49fa-9263-4dd324da60dd fa581f5dec9a482863774fc3e422ed49 { 'aliquot_tag': 'ALQ_58e0f2aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00963.RNA-Seq.R1_L007.T C3L-00963 UCEC RNA-Seq tumor CPT0016490009 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L007_R1_001.fastq.gz 3797154043 FASTQ R1_L007 unaligned CPTAC3 1041d695-f7af-49a9-a30c-b81115bd4ea7 3da454cb1e8393c1765a51dd6bc8b68c { 'aliquot_tag': 'ALQ_58e0f2aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00963.RNA-Seq.R1_.T C3L-00963 UCEC RNA-Seq tumor CPT0016540001 20210729_P3_B5_WB7988-Plate3_S17_R1_001.fastq.gz 5716287588 FASTQ R1_ unaligned CPTAC3 c61ccb46-6090-460c-9c41-b170f803b8f4 fad8cfe1057f4e64f5b9cb54172760df { 'aliquot_tag': 'ALQ_65f76d8c', 'gdc_sample_type': 'Primary Tumor' } -C3L-00963.RNA-Seq.R2_L007.T C3L-00963 UCEC RNA-Seq tumor CPT0016490009 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L007_R2_001.fastq.gz 4039874386 FASTQ R2_L007 unaligned CPTAC3 dfa1ae1e-a25a-483a-8e30-29a16c5d9939 c7236fd8c2c13c39b2312bdf3855b650 { 'aliquot_tag': 'ALQ_58e0f2aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-00963.RNA-Seq.R2_.T C3L-00963 UCEC RNA-Seq tumor CPT0016540001 20210729_P3_B5_WB7988-Plate3_S17_R2_001.fastq.gz 5940140719 FASTQ R2_ unaligned CPTAC3 c805f186-cdd7-4009-99a2-7366db342610 fc429bb3f22b13a7782c62637c6570a9 { 'aliquot_tag': 'ALQ_65f76d8c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00963.RNA-Seq.chimeric.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016540001 2b9d6115-cc2a-4f89-8e8e-52bf0f15e898.rna_seq.chimeric.gdc_realn.bam 209802031 BAM chimeric harmonized CPTAC3 f2187924-4aa3-4a59-8fdd-24555170eac8 10c51e6485e59c4ede28a8d266033128 { 'aliquot_tag': 'ALQ_65f76d8c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00963.RNA-Seq.genomic.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016490009 09d4e092-9582-405d-a053-1fa9200df0bc.rna_seq.genomic.gdc_realn.bam 8452431023 BAM genomic harmonized CPTAC3 14d998a3-3299-4006-9509-09df67e2ebd9 fa581f5dec9a482863774fc3e422ed49 { 'aliquot_tag': 'ALQ_58e0f2aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-00963.RNA-Seq.genomic.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016540001 2b9d6115-cc2a-4f89-8e8e-52bf0f15e898.rna_seq.genomic.gdc_realn.bam 9869329856 BAM genomic harmonized CPTAC3 3dcc8471-0832-429d-a9d6-3da5557e85f1 d9d915891d82e8d8816c4a5ceccdb580 { 'aliquot_tag': 'ALQ_65f76d8c', 'gdc_sample_type': 'Primary Tumor' } +C3L-00963.RNA-Seq.R1_L007.T C3L-00963 UCEC RNA-Seq tumor CPT0016490009 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L007_R1_001.fastq.gz 3797154043 FASTQ R1_L007 unaligned CPTAC3 1041d695-f7af-49a9-a30c-b81115bd4ea7 3da454cb1e8393c1765a51dd6bc8b68c { 'aliquot_tag': 'ALQ_58e0f2aa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-00963.RNA-Seq.R2_L007.T C3L-00963 UCEC RNA-Seq tumor CPT0016490009 170823_UNC31-K00269_0075_AHLCW5BBXX_CTTGTA_S2_L007_R2_001.fastq.gz 4039874386 FASTQ R2_L007 unaligned CPTAC3 dfa1ae1e-a25a-483a-8e30-29a16c5d9939 c7236fd8c2c13c39b2312bdf3855b650 { 'aliquot_tag': 'ALQ_58e0f2aa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-00963.RNA-Seq.T C3L-00963 UCEC RNA-Seq tumor CPT0016540001 20210729_P3_B5_WB7988-Plate3_S17_R1_001.fastq.gz 5716287588 FASTQ unaligned CPTAC3 c61ccb46-6090-460c-9c41-b170f803b8f4 fad8cfe1057f4e64f5b9cb54172760df +C3L-00963.RNA-Seq.T C3L-00963 UCEC RNA-Seq tumor CPT0016540001 20210729_P3_B5_WB7988-Plate3_S17_R2_001.fastq.gz 5940140719 FASTQ unaligned CPTAC3 c805f186-cdd7-4009-99a2-7366db342610 fc429bb3f22b13a7782c62637c6570a9 C3L-00963.RNA-Seq.transcriptome.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016490009 09d4e092-9582-405d-a053-1fa9200df0bc.rna_seq.transcriptome.gdc_realn.bam 9363329659 BAM transcriptome harmonized CPTAC3 79cd168b-089b-4aac-aa54-226be23b304c 54b78452e5a1219c7ba4971739f63f97 { 'aliquot_tag': 'ALQ_58e0f2aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-00963.RNA-Seq.transcriptome.T.hg38 C3L-00963 UCEC RNA-Seq tumor CPT0016540001 2b9d6115-cc2a-4f89-8e8e-52bf0f15e898.rna_seq.transcriptome.gdc_realn.bam 5524432082 BAM transcriptome harmonized CPTAC3 99bd4a65-0c5b-44ba-adbe-3e83c64cb525 90db3f02873bedd7c404b224d1d9a3af { 'aliquot_tag': 'ALQ_65f76d8c', 'gdc_sample_type': 'Primary Tumor' } C3L-00963.WGS.N C3L-00963 UCEC WGS blood_normal CPT0016580002 CPT0016580002.WholeGenome.RP-1303.bam 60363727193 BAM aligned CPTAC3 fd16df5e-b67d-403c-ae08-940c67f7e5ff 267aab00104a26f562ca4d576d4d7ecf { 'aliquot_tag': 'ALQ_390ed137', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00963.WGS.N.hg38 C3L-00963 UCEC WGS blood_normal CPT0016580002 6bf834f1-56da-43d9-98d1-6430d3011f86_gdc_realn.bam 88258777385 BAM harmonized CPTAC3 1fc95228-bfef-4385-8139-e212a669da09 ce879ca6271c285b11743d20fad69954 { 'aliquot_tag': 'ALQ_390ed137', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00963.WGS.T C3L-00963 UCEC WGS tumor CPT0016490006 CPT0016490006.WholeGenome.RP-1303.bam 73735451887 BAM aligned CPTAC3 b69e38c7-928b-4f01-82c8-ec8858b478b8 0b88c93e421d4f48ec93a6c76123b8bb { 'aliquot_tag': 'ALQ_c85fef3b', 'gdc_sample_type': 'Primary Tumor' } @@ -4709,9 +5217,9 @@ C3L-00965.MethArray.Red.T C3L-00965 LSCC Methylation Array tumor CPT0101130009 2 C3L-00965.miRNA-Seq.T C3L-00965 LSCC miRNA-Seq tumor CPT0101130006 181113_UNC31-K00269_0164_AH23NNBBXY_TGACCA_S28_L002_R1_001.unaln.bam 205935743 BAM unaligned CPTAC3 da2d8c25-c2d7-4adb-b33a-3f04472a2256 d39a79917a2593429a1e67543a9f3316 { 'aliquot_tag': 'ALQ_cc544c7a', 'gdc_sample_type': 'Primary Tumor' } C3L-00965.miRNA-Seq.T.hg38 C3L-00965 LSCC miRNA-Seq tumor CPT0101130006 bfe72a51-c186-42dc-b528-ba4c78d4797d_mirnaseq_gdc_realn.bam 223610232 BAM harmonized CPTAC3 feb74597-8032-4d6c-b535-dd82c8af5641 eefd46bbc6f9a6ebb68c941e6ea33539 { 'aliquot_tag': 'ALQ_cc544c7a', 'gdc_sample_type': 'Primary Tumor' } C3L-00965.RNA-Seq.chimeric.T.hg38 C3L-00965 LSCC RNA-Seq tumor CPT0101130006 f142890f-6340-440c-a59d-73ab8267e810.rna_seq.chimeric.gdc_realn.bam 40063747 BAM chimeric harmonized CPTAC3 becfbf52-c050-4acd-92e2-742f71e4264f 0274c6bbba4abe9fd5946480ef4e53c4 { 'aliquot_tag': 'ALQ_cc544c7a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00965.RNA-Seq.genomic.T.hg38 C3L-00965 LSCC RNA-Seq tumor CPT0101130006 f142890f-6340-440c-a59d-73ab8267e810.rna_seq.genomic.gdc_realn.bam 8029246621 BAM genomic harmonized CPTAC3 5aa268a1-b430-4673-a95e-9d68ead91e10 5c0b39e09b6629fffc5e5ab80468a011 { 'aliquot_tag': 'ALQ_cc544c7a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00965.RNA-Seq.R1_L003.T C3L-00965 LSCC RNA-Seq tumor CPT0101130006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3866276780 FASTQ R1_L003 unaligned CPTAC3 0020d643-33e0-4d2f-bbbe-ac2b1d7be8af f4f7205be9d06502d325754024c3a8b4 { 'aliquot_tag': 'ALQ_cc544c7a', 'gdc_sample_type': 'Primary Tumor' } -C3L-00965.RNA-Seq.R2_L003.T C3L-00965 LSCC RNA-Seq tumor CPT0101130006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 4009720420 FASTQ R2_L003 unaligned CPTAC3 3b6c31b7-7ef7-4306-81ae-f568f7a8bbba 7fed5e595cf2c40340627f3bf452d648 { 'aliquot_tag': 'ALQ_cc544c7a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00965.RNA-Seq.genomic.T.hg38 C3L-00965 LSCC RNA-Seq tumor CPT0101130006 f142890f-6340-440c-a59d-73ab8267e810.rna_seq.genomic.gdc_realn.bam 8029246621 BAM genomic harmonized CPTAC3 5851f61d-fc25-451e-b54d-9c341bffa7b1 5c0b39e09b6629fffc5e5ab80468a011 { 'aliquot_tag': 'ALQ_cc544c7a', 'gdc_sample_type': 'Primary Tumor' } +C3L-00965.RNA-Seq.R1_L003.T C3L-00965 LSCC RNA-Seq tumor CPT0101130006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3866276780 FASTQ R1_L003 unaligned CPTAC3 0020d643-33e0-4d2f-bbbe-ac2b1d7be8af f4f7205be9d06502d325754024c3a8b4 { 'aliquot_tag': 'ALQ_cc544c7a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00965.RNA-Seq.R2_L003.T C3L-00965 LSCC RNA-Seq tumor CPT0101130006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 4009720420 FASTQ R2_L003 unaligned CPTAC3 3b6c31b7-7ef7-4306-81ae-f568f7a8bbba 7fed5e595cf2c40340627f3bf452d648 { 'aliquot_tag': 'ALQ_cc544c7a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-00965.RNA-Seq.transcriptome.T.hg38 C3L-00965 LSCC RNA-Seq tumor CPT0101130006 f142890f-6340-440c-a59d-73ab8267e810.rna_seq.transcriptome.gdc_realn.bam 10174284530 BAM transcriptome harmonized CPTAC3 b24aa827-35aa-44fe-ba36-284fffbfc6c5 52cfbbc114c39a43b6b19f4d0e97f56d { 'aliquot_tag': 'ALQ_cc544c7a', 'gdc_sample_type': 'Primary Tumor' } C3L-00965.WGS.N C3L-00965 LSCC WGS blood_normal CPT0100930002 CPT0100930002.WholeGenome.RP-1303.bam 63111872939 BAM aligned CPTAC3 d5bc519c-4660-47c5-b386-e423496cd875 10d61df0fcb2244a3c16b5102bb9f4f0 { 'aliquot_tag': 'ALQ_811d01ba', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00965.WGS.N.hg38 C3L-00965 LSCC WGS blood_normal CPT0100930002 fb9fa687-6ff7-445d-8f04-b7831151cb3b_wgs_gdc_realn.bam 93380029224 BAM harmonized CPTAC3 178064bc-5caa-486d-a646-d6cb4dcb1eda e5ad8f5512f0f96700ff0f8c591ccfc4 { 'aliquot_tag': 'ALQ_811d01ba', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4729,16 +5237,16 @@ C3L-00966.miRNA-Seq.A C3L-00966 CCRCC miRNA-Seq tissue_normal CPT0101350009 1811 C3L-00966.miRNA-Seq.A.hg38 C3L-00966 CCRCC miRNA-Seq tissue_normal CPT0101350009 eeadf540-b8fb-44b6-8396-aed8fbb188b3_mirnaseq_gdc_realn.bam 202213923 BAM harmonized CPTAC3 1d83c6a2-e74d-4c1d-a154-3eac6b0088d5 9b837dee17c71a1c96448c017087a7fd { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00966.miRNA-Seq.T C3L-00966 CCRCC miRNA-Seq tumor CPT0101310006 181113_UNC31-K00269_0164_AH23NNBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 193289668 BAM unaligned CPTAC3 1bf4951c-cb13-45a1-b1f0-f8c1b368327c 9f36d32285955d166372748b5b0f7251 { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor' } C3L-00966.miRNA-Seq.T.hg38 C3L-00966 CCRCC miRNA-Seq tumor CPT0101310006 29114b93-e2f5-4465-a98e-583d4e4b41f3_mirnaseq_gdc_realn.bam 214305707 BAM harmonized CPTAC3 6ce08308-9cf5-478a-9ff5-830befeeef54 a55b45a63091acf232458e5fc4a7f0da { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor' } -C3L-00966.RNA-Seq.chimeric.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 8f209c59-ac18-44e8-b278-b24ca1061784.rna_seq.chimeric.gdc_realn.bam 38710128 BAM chimeric harmonized CPTAC3 0b0f11e4-1a39-49e4-a23f-631c6b079096 89ca9923a0b431f04ce0914e392fe3c5 { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00966.RNA-Seq.chimeric.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 051e058c-0471-4016-b640-265b82b158ae.rna_seq.chimeric.gdc_realn.bam 47249420 BAM chimeric harmonized CPTAC3 402d8212-8290-452b-b924-61ea3ce14847 ff39dfdb7b65b59cf88e7c446171e172 { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor' } -C3L-00966.RNA-Seq.genomic.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 8f209c59-ac18-44e8-b278-b24ca1061784.rna_seq.genomic.gdc_realn.bam 9256342079 BAM genomic harmonized CPTAC3 fead7a6e-3d3a-46e6-9db3-01a38e36b183 94df28fe3bbbede57c05227ff607928c { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00966.RNA-Seq.genomic.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 051e058c-0471-4016-b640-265b82b158ae.rna_seq.genomic.gdc_realn.bam 9161143340 BAM genomic harmonized CPTAC3 a41c4ab5-5e0a-4f4d-b95c-f6f132cd4409 97aec90f21cf92e9406f1fc300a7586d { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor' } -C3L-00966.RNA-Seq.R1_L002.A C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L002_R1_001.fastq.gz 4370927479 FASTQ R1_L002 unaligned CPTAC3 3edfa9a1-3ee2-4193-9f85-465eb53d860c 816b76b8742e6afeea0bcb655b6d6804 { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00966.RNA-Seq.R1_L003.T C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 4398111732 FASTQ R1_L003 unaligned CPTAC3 59d5dee9-9811-432f-89b6-0ac178febae1 51f483b8268085b0d226855bb70d6062 { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor' } -C3L-00966.RNA-Seq.R2_L002.A C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L002_R2_001.fastq.gz 4880561349 FASTQ R2_L002 unaligned CPTAC3 d88fb2f1-ad91-4ecc-ab43-f8cca98dcb13 212c6d1b529d1566036df648c6ed162b { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00966.RNA-Seq.R2_L003.T C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 4776142266 FASTQ R2_L003 unaligned CPTAC3 0a7e3be2-b23c-41b9-965a-c84966ab661a 2b5ef0232e88aaa30074283c96856123 { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor' } -C3L-00966.RNA-Seq.transcriptome.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 8f209c59-ac18-44e8-b278-b24ca1061784.rna_seq.transcriptome.gdc_realn.bam 10454770688 BAM transcriptome harmonized CPTAC3 50101539-46bf-4fce-a8a5-39b37d449618 22b7553fee9ab1d773a99aacd0d39dd5 { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00966.RNA-Seq.transcriptome.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 051e058c-0471-4016-b640-265b82b158ae.rna_seq.transcriptome.gdc_realn.bam 11083957900 BAM transcriptome harmonized CPTAC3 60316e2c-c794-45cf-bdc4-277ce4f7f5a3 7bfa64529a671a035e19ac572fc1668a { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor' } +C3L-00966.RNA-Seq.chimeric.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 f07c1a17-8986-4fc0-94e5-aaf2541b097f.rna_seq.chimeric.gdc_realn.bam 38687143 BAM chimeric harmonized CPTAC3 7851cae6-9328-4c96-914b-d1e36de82ed1 61039463e6ae3c7b7689385f5e893406 { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00966.RNA-Seq.chimeric.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 67624292-fd1c-4e48-bd04-aaba940d2c84.rna_seq.chimeric.gdc_realn.bam 47217173 BAM chimeric harmonized CPTAC3 a3dc2e8e-1c60-4bb1-bf81-7286d0361c27 2004ad771420e52966b6db56a34c636c { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor' } +C3L-00966.RNA-Seq.genomic.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 f07c1a17-8986-4fc0-94e5-aaf2541b097f.rna_seq.genomic.gdc_realn.bam 9257768115 BAM genomic harmonized CPTAC3 589948a1-4285-473d-bf58-fb7fd8edf228 0f9a1065ca7fd4596edda31c0c0815dd { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00966.RNA-Seq.genomic.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 67624292-fd1c-4e48-bd04-aaba940d2c84.rna_seq.genomic.gdc_realn.bam 9161683533 BAM genomic harmonized CPTAC3 931d8e81-db84-4160-99bd-ef5e6f60d9e9 7ac9298c32e21febbaf0ab62c8860aed { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor' } +C3L-00966.RNA-Seq.R1_L002.A C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L002_R1_001.fastq.gz 4370927479 FASTQ R1_L002 unaligned CPTAC3 3edfa9a1-3ee2-4193-9f85-465eb53d860c 816b76b8742e6afeea0bcb655b6d6804 { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-00966.RNA-Seq.R1_L003.T C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 4398111732 FASTQ R1_L003 unaligned CPTAC3 59d5dee9-9811-432f-89b6-0ac178febae1 51f483b8268085b0d226855bb70d6062 { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00966.RNA-Seq.R2_L002.A C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L002_R2_001.fastq.gz 4880561349 FASTQ R2_L002 unaligned CPTAC3 d88fb2f1-ad91-4ecc-ab43-f8cca98dcb13 212c6d1b529d1566036df648c6ed162b { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-00966.RNA-Seq.R2_L003.T C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 4776142266 FASTQ R2_L003 unaligned CPTAC3 0a7e3be2-b23c-41b9-965a-c84966ab661a 2b5ef0232e88aaa30074283c96856123 { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00966.RNA-Seq.transcriptome.A.hg38 C3L-00966 CCRCC RNA-Seq tissue_normal CPT0101350009 f07c1a17-8986-4fc0-94e5-aaf2541b097f.rna_seq.transcriptome.gdc_realn.bam 12039267077 BAM transcriptome harmonized CPTAC3 b95b6769-5aea-4147-99c4-4562ffe25a95 97a45f1395b536ff61a2f73dd251e000 { 'aliquot_tag': 'ALQ_9e630540', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00966.RNA-Seq.transcriptome.T.hg38 C3L-00966 CCRCC RNA-Seq tumor CPT0101310006 67624292-fd1c-4e48-bd04-aaba940d2c84.rna_seq.transcriptome.gdc_realn.bam 12692578325 BAM transcriptome harmonized CPTAC3 b6c72d32-7ebd-46b9-889c-bca4f0da54fe 1836757a5dc43983d9523b75d97dfc6a { 'aliquot_tag': 'ALQ_fb5cbe11', 'gdc_sample_type': 'Primary Tumor' } C3L-00966.WGS.A C3L-00966 CCRCC WGS tissue_normal CPT0101350006 CPT0101350006.WholeGenome.RP-1303.bam 63170432043 BAM aligned CPTAC3 869d1ba0-df18-45b0-a73e-c72be914db9a 12a049daef305ea73478bc31dccc4ad1 { 'aliquot_tag': 'ALQ_edc18d1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00966.WGS.A.hg38 C3L-00966 CCRCC WGS tissue_normal CPT0101350006 20b0ba65-fa9c-49ad-850d-d9f3e644a617_wgs_gdc_realn.bam 94012045685 BAM harmonized CPTAC3 133a9d5f-bfdc-4fd2-901c-ab3b32aa4758 4a39d08a5a40d1454739864552d6b5fd { 'aliquot_tag': 'ALQ_edc18d1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00966.WGS.N C3L-00966 CCRCC WGS blood_normal CPT0100950002 CPT0100950002.WholeGenome.RP-1303.bam 61571459125 BAM aligned CPTAC3 e369dfe9-986e-4ead-937a-57312c164f01 758852865163076aeaa5672ff58158fa { 'aliquot_tag': 'ALQ_e5df41a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4759,16 +5267,16 @@ C3L-00968.miRNA-Seq.A C3L-00968 CCRCC miRNA-Seq tissue_normal CPT0101740009 1811 C3L-00968.miRNA-Seq.A.hg38 C3L-00968 CCRCC miRNA-Seq tissue_normal CPT0101740009 f90cadf2-bfb9-4f16-aaf5-47e8fed1b7a0_mirnaseq_gdc_realn.bam 247004353 BAM harmonized CPTAC3 63177da8-2ff0-4c5e-9cf5-bc0734af7730 ec488034242a3fadfeb0d4e217e0c923 { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00968.miRNA-Seq.T C3L-00968 CCRCC miRNA-Seq tumor CPT0101710006 181113_UNC31-K00269_0164_AH23NNBBXY_GCCAAT_S30_L002_R1_001.unaln.bam 211803055 BAM unaligned CPTAC3 a0e35251-59e8-418e-8473-329edb85840f 53e870be247594f0772346c5693928f3 { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor' } C3L-00968.miRNA-Seq.T.hg38 C3L-00968 CCRCC miRNA-Seq tumor CPT0101710006 51d0bb48-1228-43c8-a28d-e59389184d55_mirnaseq_gdc_realn.bam 227413825 BAM harmonized CPTAC3 5df763c2-3928-44d2-83d2-0cca7dfb93a9 a46d4e1075333a48baadd021df78f1bc { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor' } -C3L-00968.RNA-Seq.chimeric.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 cbb800f0-1a96-4f7d-b7a6-2c3631ffd3a7.rna_seq.chimeric.gdc_realn.bam 31576059 BAM chimeric harmonized CPTAC3 a32ed8af-73ad-47b3-9833-e9e65a04e7ef 07945ca47d15c91b681003a90aa8fab4 { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00968.RNA-Seq.chimeric.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 4174d9fd-7f46-4840-8dd0-16dc3ad0f63d.rna_seq.chimeric.gdc_realn.bam 29923617 BAM chimeric harmonized CPTAC3 c671ce29-13e7-4c55-bbd3-ae086e5ddc30 b1e471984629e922f294f5467d936e0c { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor' } -C3L-00968.RNA-Seq.genomic.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 cbb800f0-1a96-4f7d-b7a6-2c3631ffd3a7.rna_seq.genomic.gdc_realn.bam 8281792080 BAM genomic harmonized CPTAC3 5d7ac776-5ae3-4dfc-821d-05eb696dbdc8 20e3b831b3aea141a0108b775dfff891 { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00968.RNA-Seq.genomic.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 4174d9fd-7f46-4840-8dd0-16dc3ad0f63d.rna_seq.genomic.gdc_realn.bam 7512733735 BAM genomic harmonized CPTAC3 d86e54cb-700a-4df2-b5e0-afc7ce573603 8224f8cbb1920ee6eac65d9a1896c736 { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor' } -C3L-00968.RNA-Seq.R1_L001.A C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L001_R1_001.fastq.gz 3713275274 FASTQ R1_L001 unaligned CPTAC3 7ae1bd60-dbef-45c0-85d7-e1d774293b68 0a27abd9e0d80b422f2a221ff20ee690 { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00968.RNA-Seq.R1_L003.T C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3575855610 FASTQ R1_L003 unaligned CPTAC3 f25b9f8f-5e30-4124-afe0-729d77b3d245 edf6699fd96b019720bae13ca2ea7b58 { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor' } -C3L-00968.RNA-Seq.R2_L001.A C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L001_R2_001.fastq.gz 4213712821 FASTQ R2_L001 unaligned CPTAC3 63d85413-58af-4f8d-a1ad-6b3ddd79769e 8e35d753c5eee96e9dd89aaadbd15d5d { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00968.RNA-Seq.R2_L003.T C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 3924284333 FASTQ R2_L003 unaligned CPTAC3 2f1c5a8f-a3c4-4da6-ae04-a15168219c03 ffcddcd03fac5afa4ca5b7b3674cf1a8 { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor' } -C3L-00968.RNA-Seq.transcriptome.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 cbb800f0-1a96-4f7d-b7a6-2c3631ffd3a7.rna_seq.transcriptome.gdc_realn.bam 8930243886 BAM transcriptome harmonized CPTAC3 d6148063-70c5-425a-a693-3e3b1aeaa016 e0d6a9c6a6d862302d0d359ba69202c6 { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00968.RNA-Seq.transcriptome.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 4174d9fd-7f46-4840-8dd0-16dc3ad0f63d.rna_seq.transcriptome.gdc_realn.bam 10271253041 BAM transcriptome harmonized CPTAC3 09643beb-7102-46de-9e38-0df41d74e411 3f567bb6ec84459dd8249e1ec2fffccf { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor' } +C3L-00968.RNA-Seq.chimeric.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 4dd8bbd4-5b51-4fbb-b47d-98afe9a4b057.rna_seq.chimeric.gdc_realn.bam 31571200 BAM chimeric harmonized CPTAC3 e5666130-248d-46fc-a1d5-dcb91e304ad3 d4994640645bb9616cccf6e87255f9e5 { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00968.RNA-Seq.chimeric.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 db7189dc-5c4f-4974-b007-bd68df864f7d.rna_seq.chimeric.gdc_realn.bam 29913692 BAM chimeric harmonized CPTAC3 ce0fe8d6-e327-4044-834d-b5be266445e4 a40ff7c1be0619d8a389beebafdd6601 { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor' } +C3L-00968.RNA-Seq.genomic.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 4dd8bbd4-5b51-4fbb-b47d-98afe9a4b057.rna_seq.genomic.gdc_realn.bam 8282559979 BAM genomic harmonized CPTAC3 f7123d95-e1c2-4493-9fae-14b392a62249 82c109e55966fc1b927b64d10a71328b { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00968.RNA-Seq.genomic.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 db7189dc-5c4f-4974-b007-bd68df864f7d.rna_seq.genomic.gdc_realn.bam 7513282715 BAM genomic harmonized CPTAC3 5c30d6cb-bb0d-4c72-906f-4076718518b1 01bf6aae3ab6089d7761763fd6a9a72d { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor' } +C3L-00968.RNA-Seq.R1_L001.A C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L001_R1_001.fastq.gz 3713275274 FASTQ R1_L001 unaligned CPTAC3 7ae1bd60-dbef-45c0-85d7-e1d774293b68 0a27abd9e0d80b422f2a221ff20ee690 { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-00968.RNA-Seq.R1_L003.T C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3575855610 FASTQ R1_L003 unaligned CPTAC3 f25b9f8f-5e30-4124-afe0-729d77b3d245 edf6699fd96b019720bae13ca2ea7b58 { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00968.RNA-Seq.R2_L001.A C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L001_R2_001.fastq.gz 4213712821 FASTQ R2_L001 unaligned CPTAC3 63d85413-58af-4f8d-a1ad-6b3ddd79769e 8e35d753c5eee96e9dd89aaadbd15d5d { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-00968.RNA-Seq.R2_L003.T C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 3924284333 FASTQ R2_L003 unaligned CPTAC3 2f1c5a8f-a3c4-4da6-ae04-a15168219c03 ffcddcd03fac5afa4ca5b7b3674cf1a8 { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00968.RNA-Seq.transcriptome.A.hg38 C3L-00968 CCRCC RNA-Seq tissue_normal CPT0101740009 4dd8bbd4-5b51-4fbb-b47d-98afe9a4b057.rna_seq.transcriptome.gdc_realn.bam 10250163686 BAM transcriptome harmonized CPTAC3 70de3055-793f-4938-9a9a-87f2123a8ce9 f174738c90a813724815cbfb4d9c3c2f { 'aliquot_tag': 'ALQ_38926ee6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00968.RNA-Seq.transcriptome.T.hg38 C3L-00968 CCRCC RNA-Seq tumor CPT0101710006 db7189dc-5c4f-4974-b007-bd68df864f7d.rna_seq.transcriptome.gdc_realn.bam 11916801924 BAM transcriptome harmonized CPTAC3 67844d0f-b68b-49e6-8984-de7b4a343fff 35702d2c1f7180807a072b34a999d066 { 'aliquot_tag': 'ALQ_60cdfc07', 'gdc_sample_type': 'Primary Tumor' } C3L-00968.WGS.A C3L-00968 CCRCC WGS tissue_normal CPT0101740006 CPT0101740006.WholeGenome.RP-1303.bam 64142342151 BAM aligned CPTAC3 8df5d7c8-7ce6-413b-8677-fd9d8b05a5e3 7edcd9272a53a65904aa5baff044f1ca { 'aliquot_tag': 'ALQ_a82d7377', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00968.WGS.A.hg38 C3L-00968 CCRCC WGS tissue_normal CPT0101740006 19f28427-afc9-4483-8b66-c9593725b3c4_wgs_gdc_realn.bam 93567774209 BAM harmonized CPTAC3 cd580ac5-9490-4f80-9df4-e6b4dffafafd 99d68718ab415395cb89b7641b8d284f { 'aliquot_tag': 'ALQ_a82d7377', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00968.WGS.N C3L-00968 CCRCC WGS blood_normal CPT0100990002 CPT0100990002.WholeGenome.RP-1303.bam 62557230591 BAM aligned CPTAC3 e8bf7eed-0992-4ca6-98e8-398383296d38 0d770e60779329c04469b572325ec29b { 'aliquot_tag': 'ALQ_cbad191b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4789,16 +5297,16 @@ C3L-00969.miRNA-Seq.A C3L-00969 CCRCC miRNA-Seq tissue_normal CPT0102070009 1811 C3L-00969.miRNA-Seq.A.hg38 C3L-00969 CCRCC miRNA-Seq tissue_normal CPT0102070009 314cf241-dd1b-4ba7-b766-b0e5aebf580a_mirnaseq_gdc_realn.bam 334939539 BAM harmonized CPTAC3 f82b516a-0b97-431e-a142-d5c04679213b 6edd687e2fc7fa178c3624b877786997 { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00969.miRNA-Seq.T C3L-00969 CCRCC miRNA-Seq tumor CPT0102010006 181113_UNC31-K00269_0164_AH23NNBBXY_CAGATC_S31_L002_R1_001.unaln.bam 202629795 BAM unaligned CPTAC3 8876b598-a49e-48a8-a442-a3dff5e22382 2f667b9dde90408d45ff9265db56a579 { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor' } C3L-00969.miRNA-Seq.T.hg38 C3L-00969 CCRCC miRNA-Seq tumor CPT0102010006 246f1ea6-1f65-4e69-b2c0-a20b857add8e_mirnaseq_gdc_realn.bam 221832152 BAM harmonized CPTAC3 97d80874-3688-4bed-a230-82dfff16a264 3d050c54b2382378607a10dbe5728570 { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor' } -C3L-00969.RNA-Seq.chimeric.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 804e61c8-25e8-4544-b5c6-5556cfbb12c9.rna_seq.chimeric.gdc_realn.bam 42546201 BAM chimeric harmonized CPTAC3 37d9f110-3aed-4f1f-bd2d-8eda5c435b01 35516f48bc247804599a9b4ff1585efe { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00969.RNA-Seq.chimeric.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 2e0364c7-6086-4647-814b-9234305d56e2.rna_seq.chimeric.gdc_realn.bam 34806275 BAM chimeric harmonized CPTAC3 8d79d0a3-c36b-48ea-a6eb-f8f36d97c050 bb343b63688dc3c9896caf835890db70 { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor' } -C3L-00969.RNA-Seq.genomic.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 804e61c8-25e8-4544-b5c6-5556cfbb12c9.rna_seq.genomic.gdc_realn.bam 10939684090 BAM genomic harmonized CPTAC3 7d9e618d-e659-4cd0-867e-05efeae53bbc 47b8b8b5ede91a9b0bc70c8aec6889fe { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00969.RNA-Seq.genomic.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 2e0364c7-6086-4647-814b-9234305d56e2.rna_seq.genomic.gdc_realn.bam 7892216699 BAM genomic harmonized CPTAC3 84387ab8-35d4-45f1-a75b-8300556bd4f4 69ba9954fe3f4cd2cec79111cfdf7091 { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor' } -C3L-00969.RNA-Seq.R1_L001.A C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4811687033 FASTQ R1_L001 unaligned CPTAC3 d71baec0-9645-4ba4-b0d4-beeeca043e61 a10de27f8c708243c5e9c6a2ecbf2465 { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00969.RNA-Seq.R1_L002.T C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3585790853 FASTQ R1_L002 unaligned CPTAC3 8191da59-7fb9-4d92-ab19-e29a27ff7618 955b1f2950215aa77673aa69540314e6 { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor' } -C3L-00969.RNA-Seq.R2_L001.A C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5410316871 FASTQ R2_L001 unaligned CPTAC3 b14bd60b-7a02-408b-94fe-8ac900127f90 b44a9ebac612944e58dccb8614169988 { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00969.RNA-Seq.R2_L002.T C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L002_R2_001.fastq.gz 3975192505 FASTQ R2_L002 unaligned CPTAC3 86cbda91-e68a-44a8-9843-b4058c8dd7cf 9464d30a6406808ef9bf13f0f747dae8 { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor' } -C3L-00969.RNA-Seq.transcriptome.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 804e61c8-25e8-4544-b5c6-5556cfbb12c9.rna_seq.transcriptome.gdc_realn.bam 11440154635 BAM transcriptome harmonized CPTAC3 814e7816-8bdc-4ad9-a806-86f96958bf09 6aea65b0c65f4297102662c26ae49d6b { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00969.RNA-Seq.transcriptome.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 2e0364c7-6086-4647-814b-9234305d56e2.rna_seq.transcriptome.gdc_realn.bam 9600045873 BAM transcriptome harmonized CPTAC3 f023b9a1-dc68-4d41-9d41-9dc2a19e780b 67d40e238cd588246229149efd0e49ff { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor' } +C3L-00969.RNA-Seq.chimeric.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 288c86b4-8516-4df8-8f97-2ec6d37834ce.rna_seq.chimeric.gdc_realn.bam 42524755 BAM chimeric harmonized CPTAC3 95f819c0-3b31-4885-a9ac-bffa5c5c225f 6fbdb0e989382006a0bdfad13ce6a0d8 { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00969.RNA-Seq.chimeric.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 79a8b66b-d0b8-42f5-b70c-4f052d63590b.rna_seq.chimeric.gdc_realn.bam 34791597 BAM chimeric harmonized CPTAC3 54c198d0-e61b-4183-a574-148aae7b17a4 e0bbcecef72b44bc4dad1cc3ade072bf { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor' } +C3L-00969.RNA-Seq.genomic.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 288c86b4-8516-4df8-8f97-2ec6d37834ce.rna_seq.genomic.gdc_realn.bam 10941203631 BAM genomic harmonized CPTAC3 3d43c9f0-42f6-4a20-aa92-3e1fa18bc28a 7f2fe87026538bff840bc17dd9c8dab5 { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00969.RNA-Seq.genomic.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 79a8b66b-d0b8-42f5-b70c-4f052d63590b.rna_seq.genomic.gdc_realn.bam 7892654597 BAM genomic harmonized CPTAC3 760d3675-ca15-4273-8250-23cd9f942b75 5b5099867570634ef26696dc428d2bc2 { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor' } +C3L-00969.RNA-Seq.R1_L001.A C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4811687033 FASTQ R1_L001 unaligned CPTAC3 d71baec0-9645-4ba4-b0d4-beeeca043e61 a10de27f8c708243c5e9c6a2ecbf2465 { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-00969.RNA-Seq.R1_L002.T C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3585790853 FASTQ R1_L002 unaligned CPTAC3 8191da59-7fb9-4d92-ab19-e29a27ff7618 955b1f2950215aa77673aa69540314e6 { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00969.RNA-Seq.R2_L001.A C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5410316871 FASTQ R2_L001 unaligned CPTAC3 b14bd60b-7a02-408b-94fe-8ac900127f90 b44a9ebac612944e58dccb8614169988 { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-00969.RNA-Seq.R2_L002.T C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L002_R2_001.fastq.gz 3975192505 FASTQ R2_L002 unaligned CPTAC3 86cbda91-e68a-44a8-9843-b4058c8dd7cf 9464d30a6406808ef9bf13f0f747dae8 { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00969.RNA-Seq.transcriptome.A.hg38 C3L-00969 CCRCC RNA-Seq tissue_normal CPT0102070009 288c86b4-8516-4df8-8f97-2ec6d37834ce.rna_seq.transcriptome.gdc_realn.bam 13070353075 BAM transcriptome harmonized CPTAC3 550e9268-9515-411e-884e-a99f265f4ad3 e25ba5ae90d2677a6176de0eb650d797 { 'aliquot_tag': 'ALQ_53df3e13', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00969.RNA-Seq.transcriptome.T.hg38 C3L-00969 CCRCC RNA-Seq tumor CPT0102010006 79a8b66b-d0b8-42f5-b70c-4f052d63590b.rna_seq.transcriptome.gdc_realn.bam 10800068983 BAM transcriptome harmonized CPTAC3 885f4961-a198-4610-a1ac-7409e715d73e 964ce6a885d058f0cc7888efc056ee1d { 'aliquot_tag': 'ALQ_4c20d622', 'gdc_sample_type': 'Primary Tumor' } C3L-00969.WGS.A C3L-00969 CCRCC WGS tissue_normal CPT0102070006 CPT0102070006.WholeGenome.RP-1303.bam 54316001799 BAM aligned CPTAC3 15587d85-160e-4f50-aeca-10533661811c a8c8809691f83ddd9c323361f7359c89 { 'aliquot_tag': 'ALQ_c3602382', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00969.WGS.A.hg38 C3L-00969 CCRCC WGS tissue_normal CPT0102070006 5a206a66-23fe-4f18-a875-9f36ee98058a_wgs_gdc_realn.bam 78647664150 BAM harmonized CPTAC3 c959ca04-34c3-46b8-8326-bb8d625e9f53 1f4923fbbb105ae368bfc47a37e756c9 { 'aliquot_tag': 'ALQ_c3602382', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00969.WGS.N C3L-00969 CCRCC WGS blood_normal CPT0101010002 CPT0101010002.WholeGenome.RP-1303.bam 67580610441 BAM aligned CPTAC3 c78869ef-6540-4d9d-82cc-412b3ba1626e f4582d48e9707fecb553a1989c569362 { 'aliquot_tag': 'ALQ_7aa508a6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4819,16 +5327,16 @@ C3L-00970.miRNA-Seq.A C3L-00970 CCRCC miRNA-Seq tissue_normal CPT0102280009 1811 C3L-00970.miRNA-Seq.A.hg38 C3L-00970 CCRCC miRNA-Seq tissue_normal CPT0102280009 8f5ed2ae-3b7e-458d-8295-c5a0b4bc3686_mirnaseq_gdc_realn.bam 316468477 BAM harmonized CPTAC3 8dcc72ff-7332-4f47-8f45-aed9b76ac4ac f0bf32a860415e13bb9bf78653e91a57 { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00970.miRNA-Seq.T C3L-00970 CCRCC miRNA-Seq tumor CPT0102240006 181113_UNC31-K00269_0164_AH23NNBBXY_CTCAGA_S16_L003_R1_001.unaln.bam 221501923 BAM unaligned CPTAC3 c250f932-1279-4482-ba5e-1d42498e6df2 34b5c6e42659e29081c6a783a0b91df2 { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor' } C3L-00970.miRNA-Seq.T.hg38 C3L-00970 CCRCC miRNA-Seq tumor CPT0102240006 3700ab0e-8fc8-49c0-af61-d0a6164cd3c8_mirnaseq_gdc_realn.bam 250267244 BAM harmonized CPTAC3 4f12ce47-19d4-46a0-b5bf-3c161bd7948d 1f2a2d809abefae8a96006b5d2c7dc1b { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor' } -C3L-00970.RNA-Seq.chimeric.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 4b82b0bd-1aae-4f34-b986-a689b8fd518f.rna_seq.chimeric.gdc_realn.bam 36292783 BAM chimeric harmonized CPTAC3 068938cf-ca55-44b8-9e4f-a3b29a8db3de 62a84d2d7aebb391d48c3d399de12ae9 { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00970.RNA-Seq.chimeric.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 b637e31f-87e1-4189-b8cb-70cf0c534b45.rna_seq.chimeric.gdc_realn.bam 31480264 BAM chimeric harmonized CPTAC3 006cda23-e3cc-4580-93b1-c06967620387 2c2a127fd1e48486244ceaf1a686c5b1 { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor' } -C3L-00970.RNA-Seq.genomic.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 4b82b0bd-1aae-4f34-b986-a689b8fd518f.rna_seq.genomic.gdc_realn.bam 10255692364 BAM genomic harmonized CPTAC3 c371f026-063c-4a5c-a1a5-3970206b2dd6 fd95d41b6265b6eea369133b0fae2798 { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00970.RNA-Seq.genomic.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 b637e31f-87e1-4189-b8cb-70cf0c534b45.rna_seq.genomic.gdc_realn.bam 8403515684 BAM genomic harmonized CPTAC3 8d5cd4d7-d04b-401d-a5c5-10aa6036f843 1c2aa06d2b1855fd47c98213b5751d87 { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor' } -C3L-00970.RNA-Seq.R1_L001.A C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4103117952 FASTQ R1_L001 unaligned CPTAC3 c72b97fd-e051-471e-a83c-37674479d7e8 21723dc9204ae71b3ee585708221d5cf { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00970.RNA-Seq.R1_L002.T C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 3904880581 FASTQ R1_L002 unaligned CPTAC3 eee4375e-6405-43a0-9df9-dd7c1dc7a590 74195878379f842127951832ba71646a { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor' } -C3L-00970.RNA-Seq.R2_L001.A C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4789445691 FASTQ R2_L001 unaligned CPTAC3 2388d568-7a9a-41db-93db-8e173548c323 883fccf9a035e9876b0ef7a9a18eb67a { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00970.RNA-Seq.R2_L002.T C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4363680591 FASTQ R2_L002 unaligned CPTAC3 eb10a154-b057-416d-ba22-2d8e09b5ba67 ef2b610e9d0cf943bf23ad068d6e00c6 { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor' } -C3L-00970.RNA-Seq.transcriptome.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 4b82b0bd-1aae-4f34-b986-a689b8fd518f.rna_seq.transcriptome.gdc_realn.bam 9448574433 BAM transcriptome harmonized CPTAC3 7eab0504-2dc0-408a-b726-9c237ed340ff a771e304f4f170b5d4956bc676c0af6d { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00970.RNA-Seq.transcriptome.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 b637e31f-87e1-4189-b8cb-70cf0c534b45.rna_seq.transcriptome.gdc_realn.bam 9468741345 BAM transcriptome harmonized CPTAC3 8d6040b6-a799-48b3-b0fd-f754abe8b408 69e31239c202ca027faea7d820f0e132 { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor' } +C3L-00970.RNA-Seq.chimeric.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 b0b957e2-0f35-4268-ac00-44065949eeaa.rna_seq.chimeric.gdc_realn.bam 36258165 BAM chimeric harmonized CPTAC3 1e5971c9-ebee-4497-ae12-c153010f3003 b7b37e2d9613ac25dbf9ad63de45f3ac { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00970.RNA-Seq.chimeric.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 3e2af7c6-ef4a-40e6-9b88-2f7eefb8e5d8.rna_seq.chimeric.gdc_realn.bam 31458537 BAM chimeric harmonized CPTAC3 5116e40f-3d11-488f-8a57-07e4fa9c7dee 17d2e306cda25b2e655820c68823aeed { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor' } +C3L-00970.RNA-Seq.genomic.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 b0b957e2-0f35-4268-ac00-44065949eeaa.rna_seq.genomic.gdc_realn.bam 10256570338 BAM genomic harmonized CPTAC3 2bc7677d-d44a-408e-8e14-81fa7e18da87 fb45123c43a430bb266743ab4526d393 { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00970.RNA-Seq.genomic.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 3e2af7c6-ef4a-40e6-9b88-2f7eefb8e5d8.rna_seq.genomic.gdc_realn.bam 8404271926 BAM genomic harmonized CPTAC3 394817ae-5d79-426e-8689-e056772dcaee 2cab4e4a751ab69e17f34298ee3ca5cf { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor' } +C3L-00970.RNA-Seq.R1_L001.A C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4103117952 FASTQ R1_L001 unaligned CPTAC3 c72b97fd-e051-471e-a83c-37674479d7e8 21723dc9204ae71b3ee585708221d5cf { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-00970.RNA-Seq.R1_L002.T C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 3904880581 FASTQ R1_L002 unaligned CPTAC3 eee4375e-6405-43a0-9df9-dd7c1dc7a590 74195878379f842127951832ba71646a { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00970.RNA-Seq.R2_L001.A C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4789445691 FASTQ R2_L001 unaligned CPTAC3 2388d568-7a9a-41db-93db-8e173548c323 883fccf9a035e9876b0ef7a9a18eb67a { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-00970.RNA-Seq.R2_L002.T C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4363680591 FASTQ R2_L002 unaligned CPTAC3 eb10a154-b057-416d-ba22-2d8e09b5ba67 ef2b610e9d0cf943bf23ad068d6e00c6 { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00970.RNA-Seq.transcriptome.A.hg38 C3L-00970 CCRCC RNA-Seq tissue_normal CPT0102280009 b0b957e2-0f35-4268-ac00-44065949eeaa.rna_seq.transcriptome.gdc_realn.bam 10779807311 BAM transcriptome harmonized CPTAC3 11379878-7d32-4248-a1bd-5cb168aab363 a6eaf1080ef1082e66b1ce283a80c010 { 'aliquot_tag': 'ALQ_9c4708c9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00970.RNA-Seq.transcriptome.T.hg38 C3L-00970 CCRCC RNA-Seq tumor CPT0102240006 3e2af7c6-ef4a-40e6-9b88-2f7eefb8e5d8.rna_seq.transcriptome.gdc_realn.bam 10838156962 BAM transcriptome harmonized CPTAC3 aef26d2e-3fa0-45f1-a774-34c95182d436 21c77edad21d781679011e0cb20247fa { 'aliquot_tag': 'ALQ_c908f859', 'gdc_sample_type': 'Primary Tumor' } C3L-00970.WGS.A C3L-00970 CCRCC WGS tissue_normal CPT0102280006 CPT0102280006.WholeGenome.RP-1303.bam 61604359960 BAM aligned CPTAC3 2bd25292-8fcf-4f09-b252-13a378b310e8 c6aecf4d1995b5512e3708d260bdfea0 { 'aliquot_tag': 'ALQ_cf81558', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00970.WGS.A.hg38 C3L-00970 CCRCC WGS tissue_normal CPT0102280006 2b440467-5dea-4683-8499-db738bd1eba9_wgs_gdc_realn.bam 89305971491 BAM harmonized CPTAC3 f230596d-752e-4c3e-875a-275b904eddc7 a9aaf5ae97db9bed067d9252b8a44196 { 'aliquot_tag': 'ALQ_cf81558', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00970.WGS.N C3L-00970 CCRCC WGS blood_normal CPT0101030002 CPT0101030002.WholeGenome.RP-1303.bam 56917246510 BAM aligned CPTAC3 2f4ce378-9e82-49bc-b041-cd5e15812b2c cab80dfedb96bb66e0dfaa365818bdb4 { 'aliquot_tag': 'ALQ_655bc6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4851,12 +5359,12 @@ C3L-00973.miRNA-Seq.T C3L-00973 LUAD miRNA-Seq tumor CPT0102450006 181113_UNC31- C3L-00973.miRNA-Seq.T.hg38 C3L-00973 LUAD miRNA-Seq tumor CPT0102450006 53d196ae-c941-42cb-ab49-b231ae30842e_mirnaseq_gdc_realn.bam 223681438 BAM harmonized CPTAC3 34fe47a5-d41f-48a6-8c2d-0efeeb6e1d31 8ab08a032207065c16c69b8c5c79a437 { 'aliquot_tag': 'ALQ_223132f4', 'gdc_sample_type': 'Primary Tumor' } C3L-00973.RNA-Seq.chimeric.A.hg38 C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 8c0be93f-de25-4bfe-abb3-ae3840bc40c2.rna_seq.chimeric.gdc_realn.bam 38606310 BAM chimeric harmonized CPTAC3 7fad1b0b-1a71-4373-a8eb-554755c2b5e1 ea4f20f87bfced1418034848de24b5bb { 'aliquot_tag': 'ALQ_daa1f645', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00973.RNA-Seq.chimeric.T.hg38 C3L-00973 LUAD RNA-Seq tumor CPT0102450006 38eeb9a9-221f-4360-8000-8264f8919b4c.rna_seq.chimeric.gdc_realn.bam 30242420 BAM chimeric harmonized CPTAC3 846dac18-82ef-4259-9b12-e5b7e1cf3010 03852364f8a4feb286b9364d2e8ab24f { 'aliquot_tag': 'ALQ_223132f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00973.RNA-Seq.genomic.A.hg38 C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 8c0be93f-de25-4bfe-abb3-ae3840bc40c2.rna_seq.genomic.gdc_realn.bam 6629267678 BAM genomic harmonized CPTAC3 defc6691-7b01-42ec-bc76-91a4509ed514 5307f351af35e059f51ade024850cc56 { 'aliquot_tag': 'ALQ_daa1f645', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00973.RNA-Seq.genomic.T.hg38 C3L-00973 LUAD RNA-Seq tumor CPT0102450006 38eeb9a9-221f-4360-8000-8264f8919b4c.rna_seq.genomic.gdc_realn.bam 8909848053 BAM genomic harmonized CPTAC3 b60d8059-170b-4bd8-b621-e365cbe8cb6b 7163c60ef4834d15d3bcb057a349d056 { 'aliquot_tag': 'ALQ_223132f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00973.RNA-Seq.R1_L002.T C3L-00973 LUAD RNA-Seq tumor CPT0102450006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 4080024026 FASTQ R1_L002 unaligned CPTAC3 dde76172-11ea-42ed-b376-abb20a41fcbd c5539a84f7a8f742be3ecf56853efe39 { 'aliquot_tag': 'ALQ_223132f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00973.RNA-Seq.R1_L005.A C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGGCC_S19_L005_R1_001.fastq.gz 3382647784 FASTQ R1_L005 unaligned CPTAC3 6afb7982-855b-4f29-8cb9-65348024e16b 602079e37788350e38b4dd1f574d2c3b { 'aliquot_tag': 'ALQ_daa1f645', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00973.RNA-Seq.R2_L002.T C3L-00973 LUAD RNA-Seq tumor CPT0102450006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4508756621 FASTQ R2_L002 unaligned CPTAC3 f5ac887f-57cc-4f16-97af-b2bc03591d05 5542f1f80c8a85261d325eac3170bb78 { 'aliquot_tag': 'ALQ_223132f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00973.RNA-Seq.R2_L005.A C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGGCC_S19_L005_R2_001.fastq.gz 3570586126 FASTQ R2_L005 unaligned CPTAC3 8a6f24e8-d172-4d34-a3a5-34aaf06cc554 deccf68219918a1b8decc2ec33daff32 { 'aliquot_tag': 'ALQ_daa1f645', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00973.RNA-Seq.genomic.A.hg38 C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 8c0be93f-de25-4bfe-abb3-ae3840bc40c2.rna_seq.genomic.gdc_realn.bam 6629267678 BAM genomic harmonized CPTAC3 9f751729-e50f-4f16-8ba8-cde05b7ea90f 5307f351af35e059f51ade024850cc56 { 'aliquot_tag': 'ALQ_daa1f645', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00973.RNA-Seq.genomic.T.hg38 C3L-00973 LUAD RNA-Seq tumor CPT0102450006 38eeb9a9-221f-4360-8000-8264f8919b4c.rna_seq.genomic.gdc_realn.bam 8909848053 BAM genomic harmonized CPTAC3 24217a82-e4dd-4444-893b-4f88e3035383 7163c60ef4834d15d3bcb057a349d056 { 'aliquot_tag': 'ALQ_223132f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00973.RNA-Seq.R1_L002.T C3L-00973 LUAD RNA-Seq tumor CPT0102450006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 4080024026 FASTQ R1_L002 unaligned CPTAC3 dde76172-11ea-42ed-b376-abb20a41fcbd c5539a84f7a8f742be3ecf56853efe39 { 'aliquot_tag': 'ALQ_223132f4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00973.RNA-Seq.R1_L005.A C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGGCC_S19_L005_R1_001.fastq.gz 3382647784 FASTQ R1_L005 unaligned CPTAC3 6afb7982-855b-4f29-8cb9-65348024e16b 602079e37788350e38b4dd1f574d2c3b { 'aliquot_tag': 'ALQ_daa1f645', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00973.RNA-Seq.R2_L002.T C3L-00973 LUAD RNA-Seq tumor CPT0102450006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4508756621 FASTQ R2_L002 unaligned CPTAC3 f5ac887f-57cc-4f16-97af-b2bc03591d05 5542f1f80c8a85261d325eac3170bb78 { 'aliquot_tag': 'ALQ_223132f4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00973.RNA-Seq.R2_L005.A C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 171215_UNC32-K00270_0072_AHN3THBBXX_GTGGCC_S19_L005_R2_001.fastq.gz 3570586126 FASTQ R2_L005 unaligned CPTAC3 8a6f24e8-d172-4d34-a3a5-34aaf06cc554 deccf68219918a1b8decc2ec33daff32 { 'aliquot_tag': 'ALQ_daa1f645', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-00973.RNA-Seq.transcriptome.A.hg38 C3L-00973 LUAD RNA-Seq tissue_normal CPT0102480006 8c0be93f-de25-4bfe-abb3-ae3840bc40c2.rna_seq.transcriptome.gdc_realn.bam 8169214512 BAM transcriptome harmonized CPTAC3 80e20b9a-73da-44f4-b028-c9163eb81fbe b39444c52e3876a5b6c5081a93427007 { 'aliquot_tag': 'ALQ_daa1f645', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00973.RNA-Seq.transcriptome.T.hg38 C3L-00973 LUAD RNA-Seq tumor CPT0102450006 38eeb9a9-221f-4360-8000-8264f8919b4c.rna_seq.transcriptome.gdc_realn.bam 10761312468 BAM transcriptome harmonized CPTAC3 0bbe28e7-e2fa-4073-8a52-1d8be82c899f cbd8ad736e4794fe5e82ebfa162d0f91 { 'aliquot_tag': 'ALQ_223132f4', 'gdc_sample_type': 'Primary Tumor' } C3L-00973.WGS.A C3L-00973 LUAD WGS tissue_normal CPT0102480009 CPT0102480009.WholeGenome.RP-1303.bam 62289238241 BAM aligned CPTAC3 2ec77b83-b306-4799-a3a5-59f553416ea3 96b90b77e40958d11241780486bc651d { 'aliquot_tag': 'ALQ_4a1eebd4', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -4877,16 +5385,16 @@ C3L-00976.MethArray.Red.A C3L-00976 CCRCC Methylation Array tissue_normal CPT016 C3L-00976.MethArray.Red.T C3L-00976 CCRCC Methylation Array tumor CPT0169530006 203219670180_R04C01_Red.idat 13676241 IDAT Red NA CPTAC3 cc37f90f-3e9e-4c95-ba3b-32fdc5eee367 bea1dee857d019f91174c582192392a1 { 'aliquot_tag': 'ALQ_a245498c', 'gdc_sample_type': 'Primary Tumor' } C3L-00976.miRNA-Seq.A C3L-00976 CCRCC miRNA-Seq tissue_normal CPT0169550009 190130_UNC31-K00269_0188_BH2FGCBBXY_AGTTCC_S15_L002_R1_001.unaln.bam 230806608 BAM unaligned CPTAC3 9ab665e7-0f7a-4638-8a58-12ecfac17a45 fcc17fde43dbf4ce561774eaa68f4ca6 { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00976.miRNA-Seq.A.hg38 C3L-00976 CCRCC miRNA-Seq tissue_normal CPT0169550009 74470bc5-dd47-4fe4-ad5a-fea836abe0cf_mirnaseq_gdc_realn.bam 250763002 BAM harmonized CPTAC3 f6e90b1d-7d87-401e-a1f6-a6a2e846420f a8081b1c31a8c54dceebd66454caf6a7 { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00976.RNA-Seq.chimeric.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 cf632b0d-66da-4210-aad8-471da2b79f39.rna_seq.chimeric.gdc_realn.bam 130707395 BAM chimeric harmonized CPTAC3 37f86aa0-ba36-4672-a86f-1a789336f693 ee5cbeeb21859d6a42857daa485e1109 { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00976.RNA-Seq.chimeric.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 ff647705-83a1-4391-abcc-b4a4fb4c0d57.rna_seq.chimeric.gdc_realn.bam 26664530 BAM chimeric harmonized CPTAC3 22daf103-36ca-4be8-a27c-d24faea6a7f6 14dac1c1c224ec6274fa3410c3441d11 { 'aliquot_tag': 'ALQ_32fa541d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00976.RNA-Seq.genomic.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 cf632b0d-66da-4210-aad8-471da2b79f39.rna_seq.genomic.gdc_realn.bam 9860612859 BAM genomic harmonized CPTAC3 dd8a0f7c-5d6a-4bdc-a55a-04e47cc41c17 ee0693356ea9ccfec51860bc57a59065 { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00976.RNA-Seq.genomic.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 ff647705-83a1-4391-abcc-b4a4fb4c0d57.rna_seq.genomic.gdc_realn.bam 6006192207 BAM genomic harmonized CPTAC3 0c14750c-2846-42f5-94b3-417b084d9297 12a0028c882e46034f30194a5af5ca83 { 'aliquot_tag': 'ALQ_32fa541d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00976.RNA-Seq.R1_L003.T C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGGCC_S10_L003_R1_001.fastq.gz 3081439503 FASTQ R1_L003 unaligned CPTAC3 8a2053e0-f076-466e-b4f4-d543d905dab2 7790b01c910f96e4cfe33efd8f7ee851 { 'aliquot_tag': 'ALQ_32fa541d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00976.RNA-Seq.R1_L006.A C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTTCC_S14_L006_R1_001.fastq.gz 4347968784 FASTQ R1_L006 unaligned CPTAC3 1a199184-989d-43da-b65f-0465fd0cb533 e306418eb5e8ecc117e0256197bbee0f { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00976.RNA-Seq.R2_L003.T C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGGCC_S10_L003_R2_001.fastq.gz 3227003334 FASTQ R2_L003 unaligned CPTAC3 e1950e0d-42f3-46c4-8263-22f695311fab 2a7061e876114259268c6b268f69b562 { 'aliquot_tag': 'ALQ_32fa541d', 'gdc_sample_type': 'Primary Tumor' } -C3L-00976.RNA-Seq.R2_L006.A C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTTCC_S14_L006_R2_001.fastq.gz 4723750748 FASTQ R2_L006 unaligned CPTAC3 7358fbaa-cace-45ef-9ee9-6c16db5ad038 c5bcb5e02a6904776da704d22c3fa7c7 { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00976.RNA-Seq.transcriptome.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 cf632b0d-66da-4210-aad8-471da2b79f39.rna_seq.transcriptome.gdc_realn.bam 9543597934 BAM transcriptome harmonized CPTAC3 a1b93e7a-541e-4ae5-8c78-cb86e52e385f b177f3899e0ead7e778fb97d82d86a79 { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00976.RNA-Seq.transcriptome.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 ff647705-83a1-4391-abcc-b4a4fb4c0d57.rna_seq.transcriptome.gdc_realn.bam 7467812171 BAM transcriptome harmonized CPTAC3 3febf3be-0c66-4310-842b-c70203197d46 36135aa72a775939fde5e5759db8daeb { 'aliquot_tag': 'ALQ_32fa541d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00976.RNA-Seq.chimeric.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 e7b10522-0ee7-414e-a799-9b61ade2d5f9.rna_seq.chimeric.gdc_realn.bam 130694466 BAM chimeric harmonized CPTAC3 4829958d-2b27-42c4-be06-49b712bb2a22 0b9e3eda36462fb4ba268cc1b222c82c { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00976.RNA-Seq.chimeric.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 0ede4ee2-3896-4038-a523-b9559e8c86e2.rna_seq.chimeric.gdc_realn.bam 26652714 BAM chimeric harmonized CPTAC3 14d03110-7a33-44fe-9b93-5c3ed7fc4f39 78afc6df01a842c65c28d8edad09aa0f { 'aliquot_tag': 'ALQ_32fa541d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00976.RNA-Seq.genomic.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 e7b10522-0ee7-414e-a799-9b61ade2d5f9.rna_seq.genomic.gdc_realn.bam 9861345934 BAM genomic harmonized CPTAC3 8f9f35a1-ad88-44ae-b825-72831cd9f353 9a6f421cb3c44647a2691157c3bb33a3 { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00976.RNA-Seq.genomic.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 0ede4ee2-3896-4038-a523-b9559e8c86e2.rna_seq.genomic.gdc_realn.bam 6007219957 BAM genomic harmonized CPTAC3 eaf2fb8f-a701-46e2-bb0f-51153e72e7f4 264ed2db2f3436b533f7d3fe4b7d5d52 { 'aliquot_tag': 'ALQ_32fa541d', 'gdc_sample_type': 'Primary Tumor' } +C3L-00976.RNA-Seq.R1_L003.T C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGGCC_S10_L003_R1_001.fastq.gz 3081439503 FASTQ R1_L003 unaligned CPTAC3 8a2053e0-f076-466e-b4f4-d543d905dab2 7790b01c910f96e4cfe33efd8f7ee851 { 'aliquot_tag': 'ALQ_32fa541d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-00976.RNA-Seq.R1_L006.A C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTTCC_S14_L006_R1_001.fastq.gz 4347968784 FASTQ R1_L006 unaligned CPTAC3 1a199184-989d-43da-b65f-0465fd0cb533 e306418eb5e8ecc117e0256197bbee0f { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-00976.RNA-Seq.R2_L003.T C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGGCC_S10_L003_R2_001.fastq.gz 3227003334 FASTQ R2_L003 unaligned CPTAC3 e1950e0d-42f3-46c4-8263-22f695311fab 2a7061e876114259268c6b268f69b562 { 'aliquot_tag': 'ALQ_32fa541d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-00976.RNA-Seq.R2_L006.A C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTTCC_S14_L006_R2_001.fastq.gz 4723750748 FASTQ R2_L006 unaligned CPTAC3 7358fbaa-cace-45ef-9ee9-6c16db5ad038 c5bcb5e02a6904776da704d22c3fa7c7 { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-00976.RNA-Seq.transcriptome.A.hg38 C3L-00976 CCRCC RNA-Seq tissue_normal CPT0169550009 e7b10522-0ee7-414e-a799-9b61ade2d5f9.rna_seq.transcriptome.gdc_realn.bam 10906745804 BAM transcriptome harmonized CPTAC3 2edea369-f9ed-4def-8ff0-19270acda64d 98af7358fd40e7558cb4af9bd534fdb9 { 'aliquot_tag': 'ALQ_bdbaa1bd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00976.RNA-Seq.transcriptome.T.hg38 C3L-00976 CCRCC RNA-Seq tumor CPT0169530009 0ede4ee2-3896-4038-a523-b9559e8c86e2.rna_seq.transcriptome.gdc_realn.bam 8513342764 BAM transcriptome harmonized CPTAC3 5db823b1-523b-45a0-9c94-60c505c7af34 50ad5117c67851794e703e0f324c29ff { 'aliquot_tag': 'ALQ_32fa541d', 'gdc_sample_type': 'Primary Tumor' } C3L-00976.WGS.A C3L-00976 CCRCC WGS tissue_normal CPT0169550006 CPT0169550006.WholeGenome.RP-1303.bam 60104283764 BAM aligned CPTAC3 4585ff5a-8aab-417a-ba31-6f05adcebadc 9c60ce4ea5986550712f4f3991952090 { 'aliquot_tag': 'ALQ_2d05bc2c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00976.WGS.A.hg38 C3L-00976 CCRCC WGS tissue_normal CPT0169550006 12b82e88-1e23-48e6-8d3d-e180d3d952be_wgs_gdc_realn.bam 87834237905 BAM harmonized CPTAC3 963033ca-b255-486d-80bc-854752529110 1030202bc8e2afae98c6b00c8510add8 { 'aliquot_tag': 'ALQ_2d05bc2c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00976.WGS.N C3L-00976 CCRCC WGS blood_normal CPT0167130002 CPT0167130002.WholeGenome.RP-1303.bam 55013882431 BAM aligned CPTAC3 e61e0379-f61b-4a88-af05-638b3bce2256 edeb86d81a4acc7bd107eaf6a894f747 { 'aliquot_tag': 'ALQ_6e86b4de', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4909,16 +5417,19 @@ C3L-00977.miRNA-Seq.T C3L-00977 HNSCC miRNA-Seq tumor CPT0169640009 190228_UNC32 C3L-00977.miRNA-Seq.T.hg38 C3L-00977 HNSCC miRNA-Seq tumor CPT0169640009 0992ab07-5423-4e81-8a70-f97ace23d8e7_mirnaseq_gdc_realn.bam 303737852 BAM harmonized CPTAC3 596b3c93-1e7b-44e1-9df6-add41ec22dad a7dae07e528c85c12fb66ad6eb636ded { 'aliquot_tag': 'ALQ_64efaa3', 'gdc_sample_type': 'Primary Tumor' } C3L-00977.RNA-Seq.chimeric.A.hg38 C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 4f5e3ac2-4ea7-41bd-bec6-ed1a75ff0519.rna_seq.chimeric.gdc_realn.bam 55928106 BAM chimeric harmonized CPTAC3 57f2bd66-6fd0-4e77-b76b-450cf306797a b7d08bfcdbfff1a560b6c4de63bf0651 { 'aliquot_tag': 'ALQ_4c29e385', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00977.RNA-Seq.chimeric.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 5c0438ae-eb68-4613-bb06-1254a28f4570.rna_seq.chimeric.gdc_realn.bam 107431441 BAM chimeric harmonized CPTAC3 2cb0f4eb-fe24-422c-b593-f46a9f70cda4 1fe0c2154843a4313b50c9ff15223e28 { 'aliquot_tag': 'ALQ_64efaa3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00977.RNA-Seq.chimeric.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 b4641ae8-8896-4167-9d60-03b614fb3908.rna_seq.chimeric.gdc_realn.bam 296388281 BAM chimeric harmonized CPTAC3 1546a2f1-4c1c-46e8-af5d-77db2626ba52 95cac5489ddbc2d6a8412df728edfb6a { 'aliquot_tag': 'ALQ_6b4e10b0', 'gdc_sample_type': 'Primary Tumor' } C3L-00977.RNA-Seq.genomic.A.hg38 C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 4f5e3ac2-4ea7-41bd-bec6-ed1a75ff0519.rna_seq.genomic.gdc_realn.bam 10466619322 BAM genomic harmonized CPTAC3 2b88edaf-1573-4db7-853c-f252f99dc340 3a99d43d85b83bd55fb785797763afd1 { 'aliquot_tag': 'ALQ_4c29e385', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00977.RNA-Seq.genomic.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 5c0438ae-eb68-4613-bb06-1254a28f4570.rna_seq.genomic.gdc_realn.bam 6019043954 BAM genomic harmonized CPTAC3 06054f58-94f6-4d37-9634-f61231cd81ce 5ef919f48c586c4284eac6e26ea8f29a { 'aliquot_tag': 'ALQ_64efaa3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00977.RNA-Seq.R1_L004.A C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 190405_UNC32-K00270_0161_BH55FNBBXY_CCGTCC_S22_L004_R1_001.fastq.gz 3381706751 FASTQ R1_L004 unaligned CPTAC3 4a048fad-1dbb-459b-a65a-fc8ee83ab8e6 75842975ea7b232240639150eca17540 { 'aliquot_tag': 'ALQ_4c29e385', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00977.RNA-Seq.R1_L006.T C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 190219_UNC31-K00269_0194_AH3V53BBXY_CTTGTA_S13_L006_R1_001.fastq.gz 2863764169 FASTQ R1_L006 unaligned CPTAC3 c245d3cc-c13b-4994-b900-6245c3e884be 2fc9cc8335b762d15410b50b13929aeb { 'aliquot_tag': 'ALQ_64efaa3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00977.RNA-Seq.R1_.T C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 20210723_P2_F2_WB7988-plate2_S62_R1_001.fastq.gz 8382418397 FASTQ R1_ unaligned CPTAC3 707bfb28-545e-4216-b52a-d0d46a339a48 9fd29cba26dcc7dbcf0243c1687ab3fa { 'aliquot_tag': 'ALQ_6b4e10b0', 'gdc_sample_type': 'Primary Tumor' } -C3L-00977.RNA-Seq.R2_L004.A C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 190405_UNC32-K00270_0161_BH55FNBBXY_CCGTCC_S22_L004_R2_001.fastq.gz 3624735725 FASTQ R2_L004 unaligned CPTAC3 f18369ea-04a4-40be-9170-fda75c86bf23 57cac5526792bf55f1aed88dab6b4195 { 'aliquot_tag': 'ALQ_4c29e385', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00977.RNA-Seq.R2_L006.T C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 190219_UNC31-K00269_0194_AH3V53BBXY_CTTGTA_S13_L006_R2_001.fastq.gz 3033744251 FASTQ R2_L006 unaligned CPTAC3 92811538-48b6-40b2-b1ba-2a103a3df2ce 1a35feabe8c2a8bafd3a5ec691ba3a31 { 'aliquot_tag': 'ALQ_64efaa3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00977.RNA-Seq.R2_.T C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 20210723_P2_F2_WB7988-plate2_S62_R2_001.fastq.gz 8646625499 FASTQ R2_ unaligned CPTAC3 753c36a3-366e-495f-82c6-c08d38947b86 5b854d95d85e07b08972c5875ddd2e22 { 'aliquot_tag': 'ALQ_6b4e10b0', 'gdc_sample_type': 'Primary Tumor' } +C3L-00977.RNA-Seq.genomic.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 5c0438ae-eb68-4613-bb06-1254a28f4570.rna_seq.genomic.gdc_realn.bam 6019043954 BAM genomic harmonized CPTAC3 af70ae99-c234-4ed3-a914-e7bcd908457d 5ef919f48c586c4284eac6e26ea8f29a { 'aliquot_tag': 'ALQ_64efaa3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00977.RNA-Seq.genomic.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 b4641ae8-8896-4167-9d60-03b614fb3908.rna_seq.genomic.gdc_realn.bam 13455538795 BAM genomic harmonized CPTAC3 a93e1421-41fa-432f-a74a-c0ce9ac46c23 1b79c33b60d4e33860ae56fc3185a9a8 { 'aliquot_tag': 'ALQ_6b4e10b0', 'gdc_sample_type': 'Primary Tumor' } +C3L-00977.RNA-Seq.R1_L004.A C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 190405_UNC32-K00270_0161_BH55FNBBXY_CCGTCC_S22_L004_R1_001.fastq.gz 3381706751 FASTQ R1_L004 unaligned CPTAC3 4a048fad-1dbb-459b-a65a-fc8ee83ab8e6 75842975ea7b232240639150eca17540 { 'aliquot_tag': 'ALQ_4c29e385', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00977.RNA-Seq.R1_L006.T C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 190219_UNC31-K00269_0194_AH3V53BBXY_CTTGTA_S13_L006_R1_001.fastq.gz 2863764169 FASTQ R1_L006 unaligned CPTAC3 c245d3cc-c13b-4994-b900-6245c3e884be 2fc9cc8335b762d15410b50b13929aeb { 'aliquot_tag': 'ALQ_64efaa3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00977.RNA-Seq.R2_L004.A C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 190405_UNC32-K00270_0161_BH55FNBBXY_CCGTCC_S22_L004_R2_001.fastq.gz 3624735725 FASTQ R2_L004 unaligned CPTAC3 f18369ea-04a4-40be-9170-fda75c86bf23 57cac5526792bf55f1aed88dab6b4195 { 'aliquot_tag': 'ALQ_4c29e385', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-00977.RNA-Seq.R2_L006.T C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 190219_UNC31-K00269_0194_AH3V53BBXY_CTTGTA_S13_L006_R2_001.fastq.gz 3033744251 FASTQ R2_L006 unaligned CPTAC3 92811538-48b6-40b2-b1ba-2a103a3df2ce 1a35feabe8c2a8bafd3a5ec691ba3a31 { 'aliquot_tag': 'ALQ_64efaa3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-00977.RNA-Seq.T C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 20210723_P2_F2_WB7988-plate2_S62_R1_001.fastq.gz 8382418397 FASTQ unaligned CPTAC3 707bfb28-545e-4216-b52a-d0d46a339a48 9fd29cba26dcc7dbcf0243c1687ab3fa +C3L-00977.RNA-Seq.T C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 20210723_P2_F2_WB7988-plate2_S62_R2_001.fastq.gz 8646625499 FASTQ unaligned CPTAC3 753c36a3-366e-495f-82c6-c08d38947b86 5b854d95d85e07b08972c5875ddd2e22 C3L-00977.RNA-Seq.transcriptome.A.hg38 C3L-00977 HNSCC RNA-Seq tissue_normal CPT0169650008 4f5e3ac2-4ea7-41bd-bec6-ed1a75ff0519.rna_seq.transcriptome.gdc_realn.bam 12347170732 BAM transcriptome harmonized CPTAC3 4da12269-3f3d-4061-b7d5-786c27f32161 8fcbe90a4b7b79661a311defdb256231 { 'aliquot_tag': 'ALQ_4c29e385', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00977.RNA-Seq.transcriptome.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169640009 5c0438ae-eb68-4613-bb06-1254a28f4570.rna_seq.transcriptome.gdc_realn.bam 9166232245 BAM transcriptome harmonized CPTAC3 a53ceb32-2c67-4c2c-a854-c4f5050f9dc0 1f0c5bd3ba1d7eb0908c8caf5025f937 { 'aliquot_tag': 'ALQ_64efaa3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00977.RNA-Seq.transcriptome.T.hg38 C3L-00977 HNSCC RNA-Seq tumor CPT0169660011 b4641ae8-8896-4167-9d60-03b614fb3908.rna_seq.transcriptome.gdc_realn.bam 8766445937 BAM transcriptome harmonized CPTAC3 fba31566-ad62-4241-b287-860adeee7ec8 9164202b970ec371dea87ebf67d2046f { 'aliquot_tag': 'ALQ_6b4e10b0', 'gdc_sample_type': 'Primary Tumor' } C3L-00977.WGS.N C3L-00977 HNSCC WGS blood_normal CPT0167150002 CPT0167150002.WholeGenome.RP-1303.bam 60919079201 BAM aligned CPTAC3 1cf1c5ec-8888-474a-ab1f-08733b376fd3 a440e488ebfadf32770d809ff7ecb27a { 'aliquot_tag': 'ALQ_e1c6417e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00977.WGS.N.hg38 C3L-00977 HNSCC WGS blood_normal CPT0167150002 2339475d-cf4f-45bb-adba-cadfb3acca30_wgs_gdc_realn.bam 89539320285 BAM harmonized CPTAC3 dd3fd04d-7f8b-4a9b-a5b6-441eec97d3cb 5cfdcffe609e91997388d1b11ea4d9c4 { 'aliquot_tag': 'ALQ_e1c6417e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00977.WGS.T C3L-00977 HNSCC WGS tumor CPT0169640006 CPT0169640006.WholeGenome.RP-1303.bam 62239156267 BAM aligned CPTAC3 1d634f27-00ac-4bec-b1fa-1ea4eabb3829 339457a58bf1bf53b58e1fad16d3e2db { 'aliquot_tag': 'ALQ_96f1e732', 'gdc_sample_type': 'Primary Tumor' } @@ -4937,16 +5448,16 @@ C3L-00980.miRNA-Seq.A C3L-00980 CCRCC miRNA-Seq tissue_normal CPT0122670009 1901 C3L-00980.miRNA-Seq.A.hg38 C3L-00980 CCRCC miRNA-Seq tissue_normal CPT0122670009 168108b3-17e7-46e2-96fe-faa6052a6b5a_mirnaseq_gdc_realn.bam 187386491 BAM harmonized CPTAC3 04276a67-a665-44eb-8112-f14bbe3eb473 3d756345090a27685bc82ae229c0fa42 { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00980.miRNA-Seq.T C3L-00980 CCRCC miRNA-Seq tumor CPT0122660006 190108_UNC31-K00269_0176_AHYGLVBBXX_CATGGC_S34_L003_R1_001.unaln.bam 211465288 BAM unaligned CPTAC3 8dbb5ff8-eacb-47b7-af44-11b945762777 63f8afe0ed09a8d0c15cc729755deda0 { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor' } C3L-00980.miRNA-Seq.T.hg38 C3L-00980 CCRCC miRNA-Seq tumor CPT0122660006 2218d3e1-0267-4650-828b-ee8a9ac8689a_mirnaseq_gdc_realn.bam 230926310 BAM harmonized CPTAC3 fd90a5e7-f84f-483c-9caf-cff8dd9fc305 88338f854dbc15bfadfe0b7ccd028a95 { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor' } -C3L-00980.RNA-Seq.chimeric.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 3420a405-e676-47bf-a663-f3cf1e6196ca.rna_seq.chimeric.gdc_realn.bam 124240983 BAM chimeric harmonized CPTAC3 8fd5e8b2-8835-432b-9b2c-2d4d67ba59d2 3a777001e9600702c7d75bf3dd057cae { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00980.RNA-Seq.chimeric.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 b540a932-9e86-42ea-93ba-62de64a8290f.rna_seq.chimeric.gdc_realn.bam 34491031 BAM chimeric harmonized CPTAC3 6da64484-e1de-4e50-b9f1-724b2f7712a2 a701c498d6ba7e696df09306eddb4dfa { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor' } -C3L-00980.RNA-Seq.genomic.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 3420a405-e676-47bf-a663-f3cf1e6196ca.rna_seq.genomic.gdc_realn.bam 9606494161 BAM genomic harmonized CPTAC3 0c726da9-b9a5-4b63-8653-d1e28e9d5461 498969f0d8327843d31b0ae486f06d2a { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00980.RNA-Seq.genomic.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 b540a932-9e86-42ea-93ba-62de64a8290f.rna_seq.genomic.gdc_realn.bam 9171745602 BAM genomic harmonized CPTAC3 164bb152-976e-4efb-8be9-10fdbb3b7446 013c45fa39506d11f124a83aad40a6bc { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor' } -C3L-00980.RNA-Seq.R1_L002.T C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 4220398038 FASTQ R1_L002 unaligned CPTAC3 dad5c72a-177a-41be-a022-08ae25920b5b e632fd8ccfb615781b0f320d1837ad6a { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor' } -C3L-00980.RNA-Seq.R1_L008.A C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 190117_UNC31-K00269_0180_AH35VKBBXY_CGTACG_S21_L008_R1_001.fastq.gz 3897154563 FASTQ R1_L008 unaligned CPTAC3 5cd302e9-3738-470e-b604-9c8f04952960 1e156989623a03f2ebc49943661345d9 { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00980.RNA-Seq.R2_L002.T C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 4591618438 FASTQ R2_L002 unaligned CPTAC3 b3f276fe-dc9f-4064-b313-a2699d1556dd d02225402b05a2508b62bd5864a8e04f { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor' } -C3L-00980.RNA-Seq.R2_L008.A C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 190117_UNC31-K00269_0180_AH35VKBBXY_CGTACG_S21_L008_R2_001.fastq.gz 4383426143 FASTQ R2_L008 unaligned CPTAC3 7cd4aeb6-87df-4a6a-9b5f-b10da78930a6 df32756f263dce4065b606dc8ff55ad3 { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00980.RNA-Seq.transcriptome.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 3420a405-e676-47bf-a663-f3cf1e6196ca.rna_seq.transcriptome.gdc_realn.bam 8346452279 BAM transcriptome harmonized CPTAC3 4d548da4-3b26-49b0-b6db-4b30dfe8bea1 f2364d47b1622e730986b483455812c4 { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00980.RNA-Seq.transcriptome.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 b540a932-9e86-42ea-93ba-62de64a8290f.rna_seq.transcriptome.gdc_realn.bam 10359889189 BAM transcriptome harmonized CPTAC3 7cfeff62-7da3-4dc4-bb54-490f0ab61dc0 ae5cc89e1b813635712c4762ef111687 { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor' } +C3L-00980.RNA-Seq.chimeric.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 91ccdd60-fb0e-431c-aad0-477fe203c8de.rna_seq.chimeric.gdc_realn.bam 124217789 BAM chimeric harmonized CPTAC3 993c8779-425b-4d08-b211-daaeb4222c3d bff97abaf327d2c116ce8c6e6684aef8 { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00980.RNA-Seq.chimeric.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 d6b8b589-f12d-49e8-8e59-01efd973a626.rna_seq.chimeric.gdc_realn.bam 34489858 BAM chimeric harmonized CPTAC3 f639bbd5-6d6a-4117-ae39-7b4e3ad31fbd 94c11bf5e1f40471d12c1d8a4d9aeef9 { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor' } +C3L-00980.RNA-Seq.genomic.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 91ccdd60-fb0e-431c-aad0-477fe203c8de.rna_seq.genomic.gdc_realn.bam 9607400096 BAM genomic harmonized CPTAC3 4f007e54-9d2d-4832-a12d-431ab805e66e 261347685580831cb79f3158b774f783 { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00980.RNA-Seq.genomic.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 d6b8b589-f12d-49e8-8e59-01efd973a626.rna_seq.genomic.gdc_realn.bam 9173298602 BAM genomic harmonized CPTAC3 c000f5f5-e01f-403e-8b5d-2f001a24554b e39717bbc0f9fce4f22e6ff4fc971e3a { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor' } +C3L-00980.RNA-Seq.R1_L002.T C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 4220398038 FASTQ R1_L002 unaligned CPTAC3 dad5c72a-177a-41be-a022-08ae25920b5b e632fd8ccfb615781b0f320d1837ad6a { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00980.RNA-Seq.R1_L008.A C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 190117_UNC31-K00269_0180_AH35VKBBXY_CGTACG_S21_L008_R1_001.fastq.gz 3897154563 FASTQ R1_L008 unaligned CPTAC3 5cd302e9-3738-470e-b604-9c8f04952960 1e156989623a03f2ebc49943661345d9 { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00980.RNA-Seq.R2_L002.T C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 4591618438 FASTQ R2_L002 unaligned CPTAC3 b3f276fe-dc9f-4064-b313-a2699d1556dd d02225402b05a2508b62bd5864a8e04f { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00980.RNA-Seq.R2_L008.A C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 190117_UNC31-K00269_0180_AH35VKBBXY_CGTACG_S21_L008_R2_001.fastq.gz 4383426143 FASTQ R2_L008 unaligned CPTAC3 7cd4aeb6-87df-4a6a-9b5f-b10da78930a6 df32756f263dce4065b606dc8ff55ad3 { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-00980.RNA-Seq.transcriptome.A.hg38 C3L-00980 CCRCC RNA-Seq tissue_normal CPT0122670009 91ccdd60-fb0e-431c-aad0-477fe203c8de.rna_seq.transcriptome.gdc_realn.bam 9532588099 BAM transcriptome harmonized CPTAC3 9c5e868c-c22b-47c9-8e63-2a1a798971ab 336e762a5dc1ac9c9dd6417f72312037 { 'aliquot_tag': 'ALQ_c7a3da73', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00980.RNA-Seq.transcriptome.T.hg38 C3L-00980 CCRCC RNA-Seq tumor CPT0122660006 d6b8b589-f12d-49e8-8e59-01efd973a626.rna_seq.transcriptome.gdc_realn.bam 11562950211 BAM transcriptome harmonized CPTAC3 3715a0b7-0a45-4659-9141-121f2a8d66b7 56af81cd3cee38ea3d3cbdb388f5c417 { 'aliquot_tag': 'ALQ_6a7cee52', 'gdc_sample_type': 'Primary Tumor' } C3L-00980.WGS.A C3L-00980 CCRCC WGS tissue_normal CPT0122670006 CPT0122670006.WholeGenome.RP-1303.bam 51481052168 BAM aligned CPTAC3 296c4494-34b0-4733-8a7a-d74897aa8664 7ae17b00df51ff4c514646efc91ac33a { 'aliquot_tag': 'ALQ_571cc7e2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00980.WGS.A.hg38 C3L-00980 CCRCC WGS tissue_normal CPT0122670006 7e05bf2c-1413-4148-abaa-7ead4aaa8419_wgs_gdc_realn.bam 74893150523 BAM harmonized CPTAC3 4e21269a-e2bc-48c5-8cb6-25af9a7872f5 1f6876fa892cdba474f83c6024f10b20 { 'aliquot_tag': 'ALQ_571cc7e2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00980.WGS.N C3L-00980 CCRCC WGS blood_normal CPT0124660002 CPT0124660002.WholeGenome.RP-1303.bam 53540831918 BAM aligned CPTAC3 a57d308e-c71c-4856-9d5b-656f26b4c609 10aef80848efd1f9ad61f9918d8e7de3 { 'aliquot_tag': 'ALQ_ec11f71', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4967,16 +5478,16 @@ C3L-00981.miRNA-Seq.A C3L-00981 CCRCC miRNA-Seq tissue_normal CPT0122730008 1901 C3L-00981.miRNA-Seq.A.hg38 C3L-00981 CCRCC miRNA-Seq tissue_normal CPT0122730008 c659aa75-e18f-4eba-9cb7-e3cdf58ed5cc_mirnaseq_gdc_realn.bam 250763845 BAM harmonized CPTAC3 2a8637b8-54f4-4f3b-8879-414b901a77f5 bd67f39f06e9080dbd21382faf414330 { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00981.miRNA-Seq.T C3L-00981 CCRCC miRNA-Seq tumor CPT0122720006 190108_UNC31-K00269_0176_AHYGLVBBXX_CATTTT_S35_L003_R1_001.unaln.bam 209078400 BAM unaligned CPTAC3 bc622217-25aa-48f4-9829-90d68614aaf3 07ef6213ab4744457ec996116861c2cd { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor' } C3L-00981.miRNA-Seq.T.hg38 C3L-00981 CCRCC miRNA-Seq tumor CPT0122720006 63cfaa5b-9db2-4be6-a21e-ce71341cddba_mirnaseq_gdc_realn.bam 222858407 BAM harmonized CPTAC3 52cda274-970f-4ba7-ae48-0652eebb0c3d e9bec1da6cb5425f53077128a211c3eb { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor' } -C3L-00981.RNA-Seq.chimeric.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 5610a3e4-8fb0-4707-8884-d809f36951e1.rna_seq.chimeric.gdc_realn.bam 132799271 BAM chimeric harmonized CPTAC3 4299d3b3-2073-466a-bc70-ea61965a1c9b 37c5ce3f3535d0ec50c0ae3438558bbf { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00981.RNA-Seq.chimeric.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 4b5e3d92-c81d-4617-a5da-b11212b39f1a.rna_seq.chimeric.gdc_realn.bam 30428108 BAM chimeric harmonized CPTAC3 b5130cd7-2f2c-4889-997f-d5ca3a7cd388 26217f0286a1408829e16b1de872d9db { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor' } -C3L-00981.RNA-Seq.genomic.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 5610a3e4-8fb0-4707-8884-d809f36951e1.rna_seq.genomic.gdc_realn.bam 11426987367 BAM genomic harmonized CPTAC3 b0fddee2-7f0d-47b4-b789-0d05cb34b498 3e5849610e97e7b8753f63c6d86dbd0e { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00981.RNA-Seq.genomic.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 4b5e3d92-c81d-4617-a5da-b11212b39f1a.rna_seq.genomic.gdc_realn.bam 9587502510 BAM genomic harmonized CPTAC3 f8c58abf-6ebf-44f3-8bb9-07cc8baea9f7 d80919e8af74dcc4dde63305bbb37258 { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor' } -C3L-00981.RNA-Seq.R1_L002.T C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 4291633654 FASTQ R1_L002 unaligned CPTAC3 6327b471-3bc6-40e4-bc9a-616f9ab3961c 621b6c236bfc44a55969ddfe0308719d { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor' } -C3L-00981.RNA-Seq.R1_L008.A C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 190117_UNC31-K00269_0180_AH35VKBBXY_GAGTGG_S22_L008_R1_001.fastq.gz 4007834300 FASTQ R1_L008 unaligned CPTAC3 f8d14556-7d50-49c6-9374-0703df20e889 01fd6a70ddac8cc82b756f52c5281534 { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00981.RNA-Seq.R2_L002.T C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 4809071727 FASTQ R2_L002 unaligned CPTAC3 7b19eb0c-2d5c-4580-9073-3d5a69e74b4c 57006cfa7a2dbf91cadc5640bd8e139a { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor' } -C3L-00981.RNA-Seq.R2_L008.A C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 190117_UNC31-K00269_0180_AH35VKBBXY_GAGTGG_S22_L008_R2_001.fastq.gz 4416298272 FASTQ R2_L008 unaligned CPTAC3 414fcc44-18a7-422e-a5a9-23dd315d3684 38e0d7b7214892f04b69f6fed3bb3245 { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00981.RNA-Seq.transcriptome.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 5610a3e4-8fb0-4707-8884-d809f36951e1.rna_seq.transcriptome.gdc_realn.bam 7578920223 BAM transcriptome harmonized CPTAC3 c881f479-5734-40a3-83c8-d67a8352663d d13ed1bec39b7014f6087f6dc8bba4f3 { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00981.RNA-Seq.transcriptome.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 4b5e3d92-c81d-4617-a5da-b11212b39f1a.rna_seq.transcriptome.gdc_realn.bam 9560549717 BAM transcriptome harmonized CPTAC3 4496b49e-dd21-44bd-a4c9-774e4dcbbfb3 2fc125f5d722974ebed5d64c4679fd50 { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor' } +C3L-00981.RNA-Seq.chimeric.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 453cac2c-f45d-4a2c-ac5f-b93934249d44.rna_seq.chimeric.gdc_realn.bam 132781401 BAM chimeric harmonized CPTAC3 f99aebe3-7921-4cde-8171-1cec61c289d6 0c22b9a6b5866f087566f75ef048fcf9 { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00981.RNA-Seq.chimeric.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 43d155bc-badd-4445-a8f3-e9ea706a35a7.rna_seq.chimeric.gdc_realn.bam 30424804 BAM chimeric harmonized CPTAC3 8e0c5af0-5f11-4b81-9d97-9d4184577fe6 c04dc3dd003530d6a9c987b820216144 { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor' } +C3L-00981.RNA-Seq.genomic.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 453cac2c-f45d-4a2c-ac5f-b93934249d44.rna_seq.genomic.gdc_realn.bam 11428268122 BAM genomic harmonized CPTAC3 bca92fed-dd71-4183-b37c-62a1251de672 1d34abe35fd22a401017021a0650038a { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00981.RNA-Seq.genomic.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 43d155bc-badd-4445-a8f3-e9ea706a35a7.rna_seq.genomic.gdc_realn.bam 9589469035 BAM genomic harmonized CPTAC3 e51cbe25-6da2-43f6-900f-be082a7ed2aa 1b499051e039a3ac0c1528154080fcf2 { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor' } +C3L-00981.RNA-Seq.R1_L002.T C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 4291633654 FASTQ R1_L002 unaligned CPTAC3 6327b471-3bc6-40e4-bc9a-616f9ab3961c 621b6c236bfc44a55969ddfe0308719d { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00981.RNA-Seq.R1_L008.A C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 190117_UNC31-K00269_0180_AH35VKBBXY_GAGTGG_S22_L008_R1_001.fastq.gz 4007834300 FASTQ R1_L008 unaligned CPTAC3 f8d14556-7d50-49c6-9374-0703df20e889 01fd6a70ddac8cc82b756f52c5281534 { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00981.RNA-Seq.R2_L002.T C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 4809071727 FASTQ R2_L002 unaligned CPTAC3 7b19eb0c-2d5c-4580-9073-3d5a69e74b4c 57006cfa7a2dbf91cadc5640bd8e139a { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00981.RNA-Seq.R2_L008.A C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 190117_UNC31-K00269_0180_AH35VKBBXY_GAGTGG_S22_L008_R2_001.fastq.gz 4416298272 FASTQ R2_L008 unaligned CPTAC3 414fcc44-18a7-422e-a5a9-23dd315d3684 38e0d7b7214892f04b69f6fed3bb3245 { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-00981.RNA-Seq.transcriptome.A.hg38 C3L-00981 CCRCC RNA-Seq tissue_normal CPT0122730008 453cac2c-f45d-4a2c-ac5f-b93934249d44.rna_seq.transcriptome.gdc_realn.bam 8473834516 BAM transcriptome harmonized CPTAC3 e90a37d0-1118-4359-9c18-87e218bda402 801dea9fc6527a6e885a5b7d13792782 { 'aliquot_tag': 'ALQ_8e789f80', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00981.RNA-Seq.transcriptome.T.hg38 C3L-00981 CCRCC RNA-Seq tumor CPT0122720006 43d155bc-badd-4445-a8f3-e9ea706a35a7.rna_seq.transcriptome.gdc_realn.bam 10668031609 BAM transcriptome harmonized CPTAC3 1fcf84f0-6e32-4189-97bd-824eb0c2b233 735926986f91d3496669542609b8ff30 { 'aliquot_tag': 'ALQ_54a09b37', 'gdc_sample_type': 'Primary Tumor' } C3L-00981.WGS.A C3L-00981 CCRCC WGS tissue_normal CPT0122730005 CPT0122730005.WholeGenome.RP-1303.bam 55047052121 BAM aligned CPTAC3 e7dd30ef-612e-45da-acea-917eab9a6588 48420a272a3a8b3e189438b97e605e9a { 'aliquot_tag': 'ALQ_f0c9e33d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00981.WGS.A.hg38 C3L-00981 CCRCC WGS tissue_normal CPT0122730005 2c0c4eae-a2e7-4de1-a18c-3445e2dac4e1_wgs_gdc_realn.bam 80053245255 BAM harmonized CPTAC3 56701e56-f395-4dec-8f12-b88421351250 0f1ab15eb55561ff0fcd6bcf31799840 { 'aliquot_tag': 'ALQ_f0c9e33d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00981.WGS.N C3L-00981 CCRCC WGS blood_normal CPT0124680002 CPT0124680002.WholeGenome.RP-1303.bam 52665215353 BAM aligned CPTAC3 9ad4daa3-ea60-48d2-a7f6-cddfe59d94bc aa5f84108a479941f4c9007f670d380f { 'aliquot_tag': 'ALQ_b1f1a110', 'gdc_sample_type': 'Blood Derived Normal' } @@ -4997,16 +5508,16 @@ C3L-00982.miRNA-Seq.A C3L-00982 CCRCC miRNA-Seq tissue_normal CPT0126920009 1901 C3L-00982.miRNA-Seq.A.hg38 C3L-00982 CCRCC miRNA-Seq tissue_normal CPT0126920009 68fe19aa-9f42-458e-b414-560ee02dfe4b_mirnaseq_gdc_realn.bam 191881013 BAM harmonized CPTAC3 6ea1add4-5023-4c72-86e9-b47209878868 49da40aaa653c11d6a19e32df721b965 { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00982.miRNA-Seq.T C3L-00982 CCRCC miRNA-Seq tumor CPT0124160009 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTTCC_S14_L004_R1_001.unaln.bam 266325487 BAM unaligned CPTAC3 b8f6b883-26e0-4869-b58d-f4204e5fb9e3 8faddb2e101a2a9080ed58c05a51924d { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor' } C3L-00982.miRNA-Seq.T.hg38 C3L-00982 CCRCC miRNA-Seq tumor CPT0124160009 589f51f3-65d8-4a7e-8e2d-4c66174293cb_mirnaseq_gdc_realn.bam 289429534 BAM harmonized CPTAC3 a55a1b90-dcf9-4f53-84a3-562380a22aa3 1e94ea4e56d8c070b05ee33f610fe962 { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor' } -C3L-00982.RNA-Seq.chimeric.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 25eedaab-230a-4c05-9f67-eb8a3687912e.rna_seq.chimeric.gdc_realn.bam 130648570 BAM chimeric harmonized CPTAC3 1e1e3642-f5db-450e-a631-a1ae774fac84 69c11ce17b403951cb1e0fd71baeecef { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00982.RNA-Seq.chimeric.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 3a5d2a82-7f8b-476a-9724-530124661c30.rna_seq.chimeric.gdc_realn.bam 46885717 BAM chimeric harmonized CPTAC3 1aa53090-9c40-4141-98e4-b0c72117f877 55e38c90fad5252b53d2a21677e4dce5 { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor' } -C3L-00982.RNA-Seq.genomic.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 25eedaab-230a-4c05-9f67-eb8a3687912e.rna_seq.genomic.gdc_realn.bam 9145723228 BAM genomic harmonized CPTAC3 0d3bc122-7b9a-40af-9aa0-53a62943adcd d22571a259f2cbaa68db92c585f32c4e { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00982.RNA-Seq.genomic.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 3a5d2a82-7f8b-476a-9724-530124661c30.rna_seq.genomic.gdc_realn.bam 10643786767 BAM genomic harmonized CPTAC3 5320f50f-2f34-44c9-b146-dceffb4bab1a a6266707508bd2606b3650abcb784cda { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor' } -C3L-00982.RNA-Seq.R1_L004.T C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 190115_UNC31-K00269_0179_BH357YBBXY_AGTTCC_S10_L004_R1_001.fastq.gz 4528048033 FASTQ R1_L004 unaligned CPTAC3 e10d235c-59e2-4665-91d7-37b2e882385c a6d8553da3a838c4408f5d4d4be6c785 { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor' } -C3L-00982.RNA-Seq.R1_L005.A C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L005_R1_001.fastq.gz 4161300881 FASTQ R1_L005 unaligned CPTAC3 cc3f49ba-2f48-40ef-ad20-6bed1d96942f c348fb2bb1189d01e5f93bb42e456c2b { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00982.RNA-Seq.R2_L004.T C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 190115_UNC31-K00269_0179_BH357YBBXY_AGTTCC_S10_L004_R2_001.fastq.gz 4922189461 FASTQ R2_L004 unaligned CPTAC3 51b9b038-236c-42f8-a09f-4d447dbdf7c3 184ff57769c6ee959a9f5a4f719ba081 { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor' } -C3L-00982.RNA-Seq.R2_L005.A C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L005_R2_001.fastq.gz 4332346638 FASTQ R2_L005 unaligned CPTAC3 c22b6562-57d3-4cdb-b4d1-6ae71d4bc48d f567fa5a355a98e801f14cf14816abaa { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00982.RNA-Seq.transcriptome.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 25eedaab-230a-4c05-9f67-eb8a3687912e.rna_seq.transcriptome.gdc_realn.bam 9441546921 BAM transcriptome harmonized CPTAC3 912c36d1-1cc7-4a4b-9e06-a12b752d0afd 2fb77b0ab22ce671b9d83bd18785c605 { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00982.RNA-Seq.transcriptome.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 3a5d2a82-7f8b-476a-9724-530124661c30.rna_seq.transcriptome.gdc_realn.bam 10934249396 BAM transcriptome harmonized CPTAC3 a7fae064-a778-4e6b-9a7c-03cd7cd70a83 1ea9a974b5759edac05db678ddc48c88 { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor' } +C3L-00982.RNA-Seq.chimeric.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 f672903f-a597-4a0f-8cfd-a6c90b623a62.rna_seq.chimeric.gdc_realn.bam 130625464 BAM chimeric harmonized CPTAC3 1d0180a3-55b2-4048-9651-733aaabdeed1 0d0107d437cae9d8cbbe7acdb39aa76d { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00982.RNA-Seq.chimeric.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 f8cf768b-4125-48f2-b5cb-ec62f7ca7126.rna_seq.chimeric.gdc_realn.bam 46879905 BAM chimeric harmonized CPTAC3 404b41ef-217d-4782-aa5f-efa76c7623bb 101da4dacd67fcfdb36d7518584b005e { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor' } +C3L-00982.RNA-Seq.genomic.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 f672903f-a597-4a0f-8cfd-a6c90b623a62.rna_seq.genomic.gdc_realn.bam 9146962599 BAM genomic harmonized CPTAC3 6b4153d3-2efc-4a51-a9e2-c496fe028eda 28c69de8019d69725f36ea2b1b3f1e9f { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00982.RNA-Seq.genomic.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 f8cf768b-4125-48f2-b5cb-ec62f7ca7126.rna_seq.genomic.gdc_realn.bam 10645538607 BAM genomic harmonized CPTAC3 d7061043-5b89-4a80-91d7-de59e806cd67 4c3e81460e530076ed45e9f4dce3bf04 { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor' } +C3L-00982.RNA-Seq.R1_L004.T C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 190115_UNC31-K00269_0179_BH357YBBXY_AGTTCC_S10_L004_R1_001.fastq.gz 4528048033 FASTQ R1_L004 unaligned CPTAC3 e10d235c-59e2-4665-91d7-37b2e882385c a6d8553da3a838c4408f5d4d4be6c785 { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00982.RNA-Seq.R1_L005.A C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L005_R1_001.fastq.gz 4161300881 FASTQ R1_L005 unaligned CPTAC3 cc3f49ba-2f48-40ef-ad20-6bed1d96942f c348fb2bb1189d01e5f93bb42e456c2b { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00982.RNA-Seq.R2_L004.T C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 190115_UNC31-K00269_0179_BH357YBBXY_AGTTCC_S10_L004_R2_001.fastq.gz 4922189461 FASTQ R2_L004 unaligned CPTAC3 51b9b038-236c-42f8-a09f-4d447dbdf7c3 184ff57769c6ee959a9f5a4f719ba081 { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00982.RNA-Seq.R2_L005.A C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L005_R2_001.fastq.gz 4332346638 FASTQ R2_L005 unaligned CPTAC3 c22b6562-57d3-4cdb-b4d1-6ae71d4bc48d f567fa5a355a98e801f14cf14816abaa { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-00982.RNA-Seq.transcriptome.A.hg38 C3L-00982 CCRCC RNA-Seq tissue_normal CPT0126920009 f672903f-a597-4a0f-8cfd-a6c90b623a62.rna_seq.transcriptome.gdc_realn.bam 10816873856 BAM transcriptome harmonized CPTAC3 b40d4b25-1554-4f04-9a0e-4993eef39fef 7fd5a4a5dd4b333065aa5ad824d8fd1d { 'aliquot_tag': 'ALQ_a5ac3c5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00982.RNA-Seq.transcriptome.T.hg38 C3L-00982 CCRCC RNA-Seq tumor CPT0124160009 f8cf768b-4125-48f2-b5cb-ec62f7ca7126.rna_seq.transcriptome.gdc_realn.bam 12281404272 BAM transcriptome harmonized CPTAC3 4cd43330-e55f-4d4e-b1ad-de36eb29e9c4 b5d169f9370ad9c2390fbc024c48e343 { 'aliquot_tag': 'ALQ_8416f641', 'gdc_sample_type': 'Primary Tumor' } C3L-00982.WGS.A C3L-00982 CCRCC WGS tissue_normal CPT0126920006 CPT0126920006.WholeGenome.RP-1303.bam 60546605674 BAM aligned CPTAC3 ea7bc515-b171-47bd-8790-85f63ded1798 784f95caff10ead628652f02b45e5dd8 { 'aliquot_tag': 'ALQ_9ae5de54', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00982.WGS.A.hg38 C3L-00982 CCRCC WGS tissue_normal CPT0126920006 0340c8df-bdc2-48fe-8415-056a4dc10d4f_wgs_gdc_realn.bam 88845324612 BAM harmonized CPTAC3 d91cb755-8625-4324-9779-408c49da2978 67d7b902409a6c15940da8f6c181befa { 'aliquot_tag': 'ALQ_9ae5de54', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00982.WGS.N C3L-00982 CCRCC WGS blood_normal CPT0128480002 CPT0128480002.WholeGenome.RP-1303.bam 53329214688 BAM aligned CPTAC3 c96c3bf2-5a11-424a-90ee-1f70083487dd ca56656c9ae9a446715857a99fedf8a4 { 'aliquot_tag': 'ALQ_3b996a6f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5024,12 +5535,15 @@ C3L-00987.MethArray.Red.T C3L-00987 HNSCC Methylation Array tumor CPT0127050006 C3L-00987.miRNA-Seq.T C3L-00987 HNSCC miRNA-Seq tumor CPT0127050009 190228_UNC32-K00270_0151_AHYLY3BBXX_GCCAAT_S6_L001_R1_001.unaln.bam 260071189 BAM unaligned CPTAC3 0fbb8f21-fb34-4299-a384-6e41a0f7e9a7 02a28c02a1c6ac834d13c0b9250da671 { 'aliquot_tag': 'ALQ_390245a9', 'gdc_sample_type': 'Primary Tumor' } C3L-00987.miRNA-Seq.T.hg38 C3L-00987 HNSCC miRNA-Seq tumor CPT0127050009 62114f12-269e-4bba-9f39-95746b6fd550_mirnaseq_gdc_realn.bam 285804174 BAM harmonized CPTAC3 5b9b8f8b-e58e-4512-a33d-e7d240244506 c53cd941403953324d78513b0bf294fb { 'aliquot_tag': 'ALQ_390245a9', 'gdc_sample_type': 'Primary Tumor' } C3L-00987.RNA-Seq.chimeric.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 35c40966-c556-4848-8738-bca58081217c.rna_seq.chimeric.gdc_realn.bam 296619401 BAM chimeric harmonized CPTAC3 9de51fc5-1ace-4e5c-94d1-3c8d539df983 620591d7fb41589606853671740f1007 { 'aliquot_tag': 'ALQ_390245a9', 'gdc_sample_type': 'Primary Tumor' } -C3L-00987.RNA-Seq.genomic.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 35c40966-c556-4848-8738-bca58081217c.rna_seq.genomic.gdc_realn.bam 8697626433 BAM genomic harmonized CPTAC3 61cf9c79-ef68-488d-bea7-861ce49f372a 52e1f2097d50dcc9927fdd98ccaf1434 { 'aliquot_tag': 'ALQ_390245a9', 'gdc_sample_type': 'Primary Tumor' } -C3L-00987.RNA-Seq.R1_L002.T C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4130454898 FASTQ R1_L002 unaligned CPTAC3 20884bd2-15d1-4e47-8c38-797daa6c002b c374929b934ed298dfa09153d089eae2 { 'aliquot_tag': 'ALQ_390245a9', 'gdc_sample_type': 'Primary Tumor' } -C3L-00987.RNA-Seq.R1_.T C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 20210714_P1_F3_WB7988_plate1_S63_R1_001.fastq.gz 6763131204 FASTQ R1_ unaligned CPTAC3 0afb49f7-b185-4364-83e8-8dd278265bb6 a171659dbcfbf46ddc8e16ae7b74fc36 { 'aliquot_tag': 'ALQ_e59e2f7f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00987.RNA-Seq.R2_L002.T C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4567521275 FASTQ R2_L002 unaligned CPTAC3 85b3c3d8-903d-463d-94bf-0443bae53c57 8fa5abf9bbe7232b146062c981f87afe { 'aliquot_tag': 'ALQ_390245a9', 'gdc_sample_type': 'Primary Tumor' } -C3L-00987.RNA-Seq.R2_.T C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 20210714_P1_F3_WB7988_plate1_S63_R2_001.fastq.gz 6946642256 FASTQ R2_ unaligned CPTAC3 7d16f3ea-2079-49c1-9522-e17e6edfc217 0c378ae5299b8caef9e7584e271256c2 { 'aliquot_tag': 'ALQ_e59e2f7f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00987.RNA-Seq.chimeric.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 948198fa-f7da-4dfa-b632-052bee55f41e.rna_seq.chimeric.gdc_realn.bam 193987319 BAM chimeric harmonized CPTAC3 0fa9b8cd-d024-4e33-b4da-6776ffb77d0a b1f497c5c5a2f5d2328fc1e0fa1b2d46 { 'aliquot_tag': 'ALQ_e59e2f7f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00987.RNA-Seq.genomic.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 35c40966-c556-4848-8738-bca58081217c.rna_seq.genomic.gdc_realn.bam 8697626433 BAM genomic harmonized CPTAC3 eef95d52-f97b-412b-9dc7-ad876edb7f89 52e1f2097d50dcc9927fdd98ccaf1434 { 'aliquot_tag': 'ALQ_390245a9', 'gdc_sample_type': 'Primary Tumor' } +C3L-00987.RNA-Seq.genomic.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 948198fa-f7da-4dfa-b632-052bee55f41e.rna_seq.genomic.gdc_realn.bam 10427410648 BAM genomic harmonized CPTAC3 7722501e-ecce-4afc-8b78-76bc8144d1a4 c56391a3f67a2564ee36e485c34eb780 { 'aliquot_tag': 'ALQ_e59e2f7f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00987.RNA-Seq.R1_L002.T C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4130454898 FASTQ R1_L002 unaligned CPTAC3 20884bd2-15d1-4e47-8c38-797daa6c002b c374929b934ed298dfa09153d089eae2 { 'aliquot_tag': 'ALQ_390245a9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00987.RNA-Seq.R2_L002.T C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4567521275 FASTQ R2_L002 unaligned CPTAC3 85b3c3d8-903d-463d-94bf-0443bae53c57 8fa5abf9bbe7232b146062c981f87afe { 'aliquot_tag': 'ALQ_390245a9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00987.RNA-Seq.T C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 20210714_P1_F3_WB7988_plate1_S63_R1_001.fastq.gz 6763131204 FASTQ unaligned CPTAC3 0afb49f7-b185-4364-83e8-8dd278265bb6 a171659dbcfbf46ddc8e16ae7b74fc36 +C3L-00987.RNA-Seq.T C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 20210714_P1_F3_WB7988_plate1_S63_R2_001.fastq.gz 6946642256 FASTQ unaligned CPTAC3 7d16f3ea-2079-49c1-9522-e17e6edfc217 0c378ae5299b8caef9e7584e271256c2 C3L-00987.RNA-Seq.transcriptome.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127050009 35c40966-c556-4848-8738-bca58081217c.rna_seq.transcriptome.gdc_realn.bam 11064885083 BAM transcriptome harmonized CPTAC3 18e0c4c2-f24d-4583-993b-6c52db9e85be 230cd9463db7a43aadb4d7fbc27a60d0 { 'aliquot_tag': 'ALQ_390245a9', 'gdc_sample_type': 'Primary Tumor' } +C3L-00987.RNA-Seq.transcriptome.T.hg38 C3L-00987 HNSCC RNA-Seq tumor CPT0127150011 948198fa-f7da-4dfa-b632-052bee55f41e.rna_seq.transcriptome.gdc_realn.bam 6330216976 BAM transcriptome harmonized CPTAC3 896a6653-5e9f-4a74-a7a1-4dbcd3f62522 19e9b59f9fba47a02dd1b371e6b8fe17 { 'aliquot_tag': 'ALQ_e59e2f7f', 'gdc_sample_type': 'Primary Tumor' } C3L-00987.WGS.N C3L-00987 HNSCC WGS blood_normal CPT0128500002 CPT0128500002.WholeGenome.RP-1303.bam 75967541992 BAM aligned CPTAC3 e46e023c-8f43-4435-94f2-39d8d1fb3a0d 754073ad55667e6c37b3c553374a8778 { 'aliquot_tag': 'ALQ_c0b5f20b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00987.WGS.N.hg38 C3L-00987 HNSCC WGS blood_normal CPT0128500002 3dcd0253-ff02-4908-b27c-128e54c93560_wgs_gdc_realn.bam 112696502067 BAM harmonized CPTAC3 8f414a09-7ec3-4247-a058-0ec60a8bad7f db12501c2173ac071d4d8cf5b20fbc52 { 'aliquot_tag': 'ALQ_c0b5f20b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00987.WGS.T C3L-00987 HNSCC WGS tumor CPT0127050006 CPT0127050006.WholeGenome.RP-1303.bam 60978252350 BAM aligned CPTAC3 90f03ea3-b2bd-4053-aab7-48cf5199e3bf afc3f5d9f0bc7d4dedc138a6736c3b04 { 'aliquot_tag': 'ALQ_a9bd5838', 'gdc_sample_type': 'Primary Tumor' } @@ -5046,16 +5560,16 @@ C3L-00991.miRNA-Seq.A C3L-00991 CCRCC miRNA-Seq tissue_normal CPT0123030009 1901 C3L-00991.miRNA-Seq.A.hg38 C3L-00991 CCRCC miRNA-Seq tissue_normal CPT0123030009 ec90ac3c-7a32-4480-8393-b446c32f01ad_mirnaseq_gdc_realn.bam 239198742 BAM harmonized CPTAC3 4d706cfc-b101-4277-a20a-217009768348 f687a956442fc680c12b89407d583282 { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00991.miRNA-Seq.T C3L-00991 CCRCC miRNA-Seq tumor CPT0122990006 190108_UNC31-K00269_0176_AHYGLVBBXX_CCAACA_S36_L003_R1_001.unaln.bam 260086874 BAM unaligned CPTAC3 bc6e200a-529b-40b7-a608-ae912254e0fb fd47694cfec1892bda667783e398a228 { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor' } C3L-00991.miRNA-Seq.T.hg38 C3L-00991 CCRCC miRNA-Seq tumor CPT0122990006 d837bccb-3af6-4351-91e1-8762f2a03cff_mirnaseq_gdc_realn.bam 282861768 BAM harmonized CPTAC3 d4e8bcfd-03ca-4bae-a0eb-5ef9b81b505e 4a59736d55bb7f0d51f577094c04f5dc { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor' } -C3L-00991.RNA-Seq.chimeric.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 80498339-267b-413a-a50a-92bb5e0d77c1.rna_seq.chimeric.gdc_realn.bam 89348922 BAM chimeric harmonized CPTAC3 5eb1ef8f-fe63-4cc3-8151-d01fb66ffd88 492b414d05ccfa0b1652d3b5ab65bbdf { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00991.RNA-Seq.chimeric.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 0b43d3f1-fef2-4e74-a8b4-581c74a34a5d.rna_seq.chimeric.gdc_realn.bam 28884634 BAM chimeric harmonized CPTAC3 040644a7-9c46-4ffb-9eea-f95d80465ceb 1219968706876b0c2f559adc7208e7be { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor' } -C3L-00991.RNA-Seq.genomic.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 80498339-267b-413a-a50a-92bb5e0d77c1.rna_seq.genomic.gdc_realn.bam 8678735035 BAM genomic harmonized CPTAC3 f20a5988-595b-4b38-ba6e-c95fcf64f337 6d415196cb8fb3491dd70227c281daa6 { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00991.RNA-Seq.genomic.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 0b43d3f1-fef2-4e74-a8b4-581c74a34a5d.rna_seq.genomic.gdc_realn.bam 8297912797 BAM genomic harmonized CPTAC3 53076db5-718c-47cc-a9dd-9a85b459d1bf 6c1730d64a9952736afefca5ffa1d424 { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor' } -C3L-00991.RNA-Seq.R1_L002.T C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L002_R1_001.fastq.gz 3858780381 FASTQ R1_L002 unaligned CPTAC3 39d58648-1c5a-4633-8a93-db1ca405a8ad 4f25c17760159304d766cfc6ed26f398 { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor' } -C3L-00991.RNA-Seq.R1_L008.A C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTGAT_S23_L008_R1_001.fastq.gz 3591976132 FASTQ R1_L008 unaligned CPTAC3 549226f6-346a-4c61-b085-5d74c4622f80 6bca4d32d1ccab451642d1435ec6468f { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00991.RNA-Seq.R2_L002.T C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L002_R2_001.fastq.gz 4187342036 FASTQ R2_L002 unaligned CPTAC3 e67c30fb-f01c-48c7-9e96-9d57d6cd4080 92873608b4c85be3f5f5080ec19efc00 { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor' } -C3L-00991.RNA-Seq.R2_L008.A C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTGAT_S23_L008_R2_001.fastq.gz 3959759959 FASTQ R2_L008 unaligned CPTAC3 eda73d8e-4803-4257-87c9-184b83c50146 08fee1810eeec07b3227098282726a15 { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00991.RNA-Seq.transcriptome.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 80498339-267b-413a-a50a-92bb5e0d77c1.rna_seq.transcriptome.gdc_realn.bam 8548996008 BAM transcriptome harmonized CPTAC3 2b3f7097-0066-49e6-8e86-bbd120347219 c14f3553c33ecf4d1d611cfa0391061c { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00991.RNA-Seq.transcriptome.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 0b43d3f1-fef2-4e74-a8b4-581c74a34a5d.rna_seq.transcriptome.gdc_realn.bam 9527131553 BAM transcriptome harmonized CPTAC3 93f0fcf2-6f2a-472d-8674-68a9e3195a16 735afd74cb5632a4a950c35b84255f1a { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor' } +C3L-00991.RNA-Seq.chimeric.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 a042e775-7569-46ce-96a5-e6e7058c322a.rna_seq.chimeric.gdc_realn.bam 89337729 BAM chimeric harmonized CPTAC3 75389fc1-8934-4fc9-be90-297aa03da8d4 4117b01d19eaa0b654df11eefc0255f7 { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00991.RNA-Seq.chimeric.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 eb61a20c-f65e-47d3-81d3-1241f176ee1a.rna_seq.chimeric.gdc_realn.bam 28854809 BAM chimeric harmonized CPTAC3 39e40bf8-34a6-433b-9c26-a84f683f8eda a94d62d60fcb6c7912be342085544635 { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor' } +C3L-00991.RNA-Seq.genomic.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 a042e775-7569-46ce-96a5-e6e7058c322a.rna_seq.genomic.gdc_realn.bam 8679998034 BAM genomic harmonized CPTAC3 449daecd-4a76-4af7-adc7-f1e22964de70 f65928e2553ef996dfc3d15a5cec1cd5 { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00991.RNA-Seq.genomic.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 eb61a20c-f65e-47d3-81d3-1241f176ee1a.rna_seq.genomic.gdc_realn.bam 8299406564 BAM genomic harmonized CPTAC3 b269464f-cecf-4825-8d41-18e793d874ab c67004f8243ea1689824981970e187bb { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor' } +C3L-00991.RNA-Seq.R1_L002.T C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L002_R1_001.fastq.gz 3858780381 FASTQ R1_L002 unaligned CPTAC3 39d58648-1c5a-4633-8a93-db1ca405a8ad 4f25c17760159304d766cfc6ed26f398 { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00991.RNA-Seq.R1_L008.A C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTGAT_S23_L008_R1_001.fastq.gz 3591976132 FASTQ R1_L008 unaligned CPTAC3 549226f6-346a-4c61-b085-5d74c4622f80 6bca4d32d1ccab451642d1435ec6468f { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-00991.RNA-Seq.R2_L002.T C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L002_R2_001.fastq.gz 4187342036 FASTQ R2_L002 unaligned CPTAC3 e67c30fb-f01c-48c7-9e96-9d57d6cd4080 92873608b4c85be3f5f5080ec19efc00 { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-00991.RNA-Seq.R2_L008.A C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTGAT_S23_L008_R2_001.fastq.gz 3959759959 FASTQ R2_L008 unaligned CPTAC3 eda73d8e-4803-4257-87c9-184b83c50146 08fee1810eeec07b3227098282726a15 { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-00991.RNA-Seq.transcriptome.A.hg38 C3L-00991 CCRCC RNA-Seq tissue_normal CPT0123030009 a042e775-7569-46ce-96a5-e6e7058c322a.rna_seq.transcriptome.gdc_realn.bam 9708481350 BAM transcriptome harmonized CPTAC3 e47f9176-5fc4-48a6-aaa9-bf9c63ae6729 cc7828a84d1bd9f5e2616e9f8a8ea9cd { 'aliquot_tag': 'ALQ_420d941a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00991.RNA-Seq.transcriptome.T.hg38 C3L-00991 CCRCC RNA-Seq tumor CPT0122990006 eb61a20c-f65e-47d3-81d3-1241f176ee1a.rna_seq.transcriptome.gdc_realn.bam 10886684443 BAM transcriptome harmonized CPTAC3 5c3b50c2-5280-41c4-b938-13c25a4e59b6 0d27ed4281a3d00119a47a6595bd5cec { 'aliquot_tag': 'ALQ_197acb56', 'gdc_sample_type': 'Primary Tumor' } C3L-00991.WGS.A C3L-00991 CCRCC WGS tissue_normal CPT0123030006 CPT0123030006.WholeGenome.RP-1303.bam 55842017460 BAM aligned CPTAC3 eb3a2ba7-79ea-4def-b470-b46a57286fff 605e297c16f529f82a4e0e5f1371bce0 { 'aliquot_tag': 'ALQ_d2b2898b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00991.WGS.A.hg38 C3L-00991 CCRCC WGS tissue_normal CPT0123030006 ec283004-af44-4c9e-a7dd-b612be07284b_wgs_gdc_realn.bam 82372480584 BAM harmonized CPTAC3 cf49c113-1eb3-460c-b6a0-2589250bcb81 7230215b4cbed86168689c162ae74f1d { 'aliquot_tag': 'ALQ_d2b2898b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00991.WGS.N C3L-00991 CCRCC WGS blood_normal CPT0124740002 CPT0124740002.WholeGenome.RP-1303.bam 66166571178 BAM aligned CPTAC3 c09e75ff-f8f9-4255-8456-3a3f0f5cc736 f5e534dd32b101b220ce09b0180e25bd { 'aliquot_tag': 'ALQ_bf5d9fb4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5078,12 +5592,12 @@ C3L-00993.miRNA-Seq.T C3L-00993 LSCC miRNA-Seq tumor CPT0102790006 181113_UNC31- C3L-00993.miRNA-Seq.T.hg38 C3L-00993 LSCC miRNA-Seq tumor CPT0102790006 c9bb1cb0-b7d4-4d7e-af14-df2a429ada87_mirnaseq_gdc_realn.bam 202991666 BAM harmonized CPTAC3 4b1aae6a-2c5f-4f68-8bb1-46486625fce2 75424d08bdd82c2049ba64eba230aeb7 { 'aliquot_tag': 'ALQ_6155ad5b', 'gdc_sample_type': 'Primary Tumor' } C3L-00993.RNA-Seq.chimeric.A.hg38 C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 ab9082ac-ed27-4092-88ea-829b45a70903.rna_seq.chimeric.gdc_realn.bam 35525076 BAM chimeric harmonized CPTAC3 c6d46788-d48c-4607-be4e-67f3dec07f69 b59f0d92c06d8f3e493c7ef2629423fd { 'aliquot_tag': 'ALQ_f82cc6ae', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00993.RNA-Seq.chimeric.T.hg38 C3L-00993 LSCC RNA-Seq tumor CPT0102790006 387329d1-8200-4a2b-a17d-d9d4b1b66d8e.rna_seq.chimeric.gdc_realn.bam 37687079 BAM chimeric harmonized CPTAC3 7aac7099-fedf-48e4-b686-8eeb8539fa76 87eadd49282b56b10a00ae0679f47b8d { 'aliquot_tag': 'ALQ_6155ad5b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00993.RNA-Seq.genomic.A.hg38 C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 ab9082ac-ed27-4092-88ea-829b45a70903.rna_seq.genomic.gdc_realn.bam 9079085742 BAM genomic harmonized CPTAC3 39f6775a-3f01-4c6b-96b9-f4a2d37e9b3e f1023d32324824df1770e111372f4c04 { 'aliquot_tag': 'ALQ_f82cc6ae', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00993.RNA-Seq.genomic.T.hg38 C3L-00993 LSCC RNA-Seq tumor CPT0102790006 387329d1-8200-4a2b-a17d-d9d4b1b66d8e.rna_seq.genomic.gdc_realn.bam 9204798768 BAM genomic harmonized CPTAC3 39b99547-b8ef-41e4-9f76-cabc32ea4191 00a28fa922072aadcb0c24e082b51b83 { 'aliquot_tag': 'ALQ_6155ad5b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00993.RNA-Seq.R1_L002.A C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3706316344 FASTQ R1_L002 unaligned CPTAC3 637b3574-f585-443c-b572-ed4666ea9cd0 5a724cf8f18e1b66e1eddbe07a3cd99b { 'aliquot_tag': 'ALQ_f82cc6ae', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00993.RNA-Seq.R1_L002.T C3L-00993 LSCC RNA-Seq tumor CPT0102790006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 4197150006 FASTQ R1_L002 unaligned CPTAC3 e494363c-c751-4544-a3de-9c0312e0c932 b46b822aadd3c3318ae9cdc54f690704 { 'aliquot_tag': 'ALQ_6155ad5b', 'gdc_sample_type': 'Primary Tumor' } -C3L-00993.RNA-Seq.R2_L002.A C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L002_R2_001.fastq.gz 4169140451 FASTQ R2_L002 unaligned CPTAC3 b9971ca9-1778-4bef-8cee-f8bf3ac70d3f 13e9812e6f73a6f1cd1f19ea9b5cb82d { 'aliquot_tag': 'ALQ_f82cc6ae', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00993.RNA-Seq.R2_L002.T C3L-00993 LSCC RNA-Seq tumor CPT0102790006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4629977018 FASTQ R2_L002 unaligned CPTAC3 b0317768-74e0-455b-9a99-694fda26d085 2a6cdee89b7462705c553b3f8f33f8ea { 'aliquot_tag': 'ALQ_6155ad5b', 'gdc_sample_type': 'Primary Tumor' } +C3L-00993.RNA-Seq.genomic.A.hg38 C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 ab9082ac-ed27-4092-88ea-829b45a70903.rna_seq.genomic.gdc_realn.bam 9079085742 BAM genomic harmonized CPTAC3 df3b7c54-052d-4a18-91ff-3365e54bf533 f1023d32324824df1770e111372f4c04 { 'aliquot_tag': 'ALQ_f82cc6ae', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00993.RNA-Seq.genomic.T.hg38 C3L-00993 LSCC RNA-Seq tumor CPT0102790006 387329d1-8200-4a2b-a17d-d9d4b1b66d8e.rna_seq.genomic.gdc_realn.bam 9204798768 BAM genomic harmonized CPTAC3 2de6a69b-c230-42bd-af91-befe2bfcdfd4 00a28fa922072aadcb0c24e082b51b83 { 'aliquot_tag': 'ALQ_6155ad5b', 'gdc_sample_type': 'Primary Tumor' } +C3L-00993.RNA-Seq.R1_L002.A C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3706316344 FASTQ R1_L002 unaligned CPTAC3 637b3574-f585-443c-b572-ed4666ea9cd0 5a724cf8f18e1b66e1eddbe07a3cd99b { 'aliquot_tag': 'ALQ_f82cc6ae', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-00993.RNA-Seq.R1_L002.T C3L-00993 LSCC RNA-Seq tumor CPT0102790006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 4197150006 FASTQ R1_L002 unaligned CPTAC3 e494363c-c751-4544-a3de-9c0312e0c932 b46b822aadd3c3318ae9cdc54f690704 { 'aliquot_tag': 'ALQ_6155ad5b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-00993.RNA-Seq.R2_L002.A C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L002_R2_001.fastq.gz 4169140451 FASTQ R2_L002 unaligned CPTAC3 b9971ca9-1778-4bef-8cee-f8bf3ac70d3f 13e9812e6f73a6f1cd1f19ea9b5cb82d { 'aliquot_tag': 'ALQ_f82cc6ae', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-00993.RNA-Seq.R2_L002.T C3L-00993 LSCC RNA-Seq tumor CPT0102790006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4629977018 FASTQ R2_L002 unaligned CPTAC3 b0317768-74e0-455b-9a99-694fda26d085 2a6cdee89b7462705c553b3f8f33f8ea { 'aliquot_tag': 'ALQ_6155ad5b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-00993.RNA-Seq.transcriptome.A.hg38 C3L-00993 LSCC RNA-Seq tissue_normal CPT0102840009 ab9082ac-ed27-4092-88ea-829b45a70903.rna_seq.transcriptome.gdc_realn.bam 10480542526 BAM transcriptome harmonized CPTAC3 c0640328-71cb-41b0-95ab-76cc4e8abf0e 909105a1630fac087e88ac51c9e85d77 { 'aliquot_tag': 'ALQ_f82cc6ae', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00993.RNA-Seq.transcriptome.T.hg38 C3L-00993 LSCC RNA-Seq tumor CPT0102790006 387329d1-8200-4a2b-a17d-d9d4b1b66d8e.rna_seq.transcriptome.gdc_realn.bam 12574905571 BAM transcriptome harmonized CPTAC3 9f811fda-fd08-44d0-89f2-40e808054b86 04d89d7e06388984a2eabccc53812b7d { 'aliquot_tag': 'ALQ_6155ad5b', 'gdc_sample_type': 'Primary Tumor' } C3L-00993.WGS.A C3L-00993 LSCC WGS tissue_normal CPT0102840006 CPT0102840006.WholeGenome.RP-1303.bam 61579664372 BAM aligned CPTAC3 cc337913-ce02-4643-930e-c535498c308f 1b7a3105e362c16d83979f33bfa75652 { 'aliquot_tag': 'ALQ_6893db3f', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -5108,16 +5622,19 @@ C3L-00994.miRNA-Seq.T C3L-00994 HNSCC miRNA-Seq tumor CPT0169730009 190228_UNC32 C3L-00994.miRNA-Seq.T.hg38 C3L-00994 HNSCC miRNA-Seq tumor CPT0169730009 f68e23ce-f8c2-40af-a8f2-0fb851d699dd_mirnaseq_gdc_realn.bam 424262120 BAM harmonized CPTAC3 6d8be5bb-a629-45b0-bd4d-7db45639ed57 32a8a26e4ce8069d9bceecc1a9c229a0 { 'aliquot_tag': 'ALQ_7f32f516', 'gdc_sample_type': 'Primary Tumor' } C3L-00994.RNA-Seq.chimeric.A.hg38 C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 2a73af06-3e0e-48fa-89c0-5e16179d06dc.rna_seq.chimeric.gdc_realn.bam 196006791 BAM chimeric harmonized CPTAC3 084f2b1a-f7fc-4d11-999e-a3a33bfdc27e efbd12db4b77501d374745fd91b6c23c { 'aliquot_tag': 'ALQ_f07200b6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00994.RNA-Seq.chimeric.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 49145bae-112a-4932-bed6-b91545ff29c2.rna_seq.chimeric.gdc_realn.bam 314836841 BAM chimeric harmonized CPTAC3 d7cc85a4-9751-470b-8a02-33b557513b64 c40c5686b27113cc147e0663905a7792 { 'aliquot_tag': 'ALQ_7f32f516', 'gdc_sample_type': 'Primary Tumor' } -C3L-00994.RNA-Seq.genomic.A.hg38 C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 2a73af06-3e0e-48fa-89c0-5e16179d06dc.rna_seq.genomic.gdc_realn.bam 8505972456 BAM genomic harmonized CPTAC3 e625b70f-6760-4fbf-bc19-63a9c5019f12 8de9d081898c40702ebfaa803f8aeb59 { 'aliquot_tag': 'ALQ_f07200b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00994.RNA-Seq.genomic.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 49145bae-112a-4932-bed6-b91545ff29c2.rna_seq.genomic.gdc_realn.bam 6397735944 BAM genomic harmonized CPTAC3 f79120fe-080e-4abd-a990-95226cada46c 495368fe9a137f9a65dfbcdc4064be5a { 'aliquot_tag': 'ALQ_7f32f516', 'gdc_sample_type': 'Primary Tumor' } -C3L-00994.RNA-Seq.R1_L004.A C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGAAA_S16_L004_R1_001.fastq.gz 4217012607 FASTQ R1_L004 unaligned CPTAC3 b337afe8-58ea-45c3-8bd5-9ef868ded7ac 335145046fa9ad17e9b884c2907f141e { 'aliquot_tag': 'ALQ_f07200b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00994.RNA-Seq.R1_L006.T C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 190219_UNC31-K00269_0194_AH3V53BBXY_AGTCAA_S15_L006_R1_001.fastq.gz 2961714196 FASTQ R1_L006 unaligned CPTAC3 e244d40f-dc82-4b79-8b15-3718db683b05 4298da6093d4ee3247849123c9f64ace { 'aliquot_tag': 'ALQ_7f32f516', 'gdc_sample_type': 'Primary Tumor' } -C3L-00994.RNA-Seq.R1_.T C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 20210714_P1_E4_WB7988_plate1_S52_R1_001.fastq.gz 3746814112 FASTQ R1_ unaligned CPTAC3 940b307f-9b3c-4731-9590-a4789bff91c0 6abff3cca169f78d2e52c2816d969826 { 'aliquot_tag': 'ALQ_224254c4', 'gdc_sample_type': 'Primary Tumor' } -C3L-00994.RNA-Seq.R2_L004.A C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGAAA_S16_L004_R2_001.fastq.gz 4193730244 FASTQ R2_L004 unaligned CPTAC3 d24d1924-a1df-48fc-8ab9-746672bce798 090cf8be2c85d5b5d82dff2aeaabe9ca { 'aliquot_tag': 'ALQ_f07200b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00994.RNA-Seq.R2_L006.T C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 190219_UNC31-K00269_0194_AH3V53BBXY_AGTCAA_S15_L006_R2_001.fastq.gz 3137682375 FASTQ R2_L006 unaligned CPTAC3 ebb0beb1-26e0-4250-8a86-f82f9caa3ad7 4e2bddd939fd51d48b542f5a587025c3 { 'aliquot_tag': 'ALQ_7f32f516', 'gdc_sample_type': 'Primary Tumor' } -C3L-00994.RNA-Seq.R2_.T C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 20210714_P1_E4_WB7988_plate1_S52_R2_001.fastq.gz 3865482261 FASTQ R2_ unaligned CPTAC3 f0141521-60b6-41fc-ab98-9ec99250a71c 994c91fea2318c0f6f9a5c3db3e8bd56 { 'aliquot_tag': 'ALQ_224254c4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00994.RNA-Seq.chimeric.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 c889976b-ac2a-4dda-a21c-422722dc59a2.rna_seq.chimeric.gdc_realn.bam 61614622 BAM chimeric harmonized CPTAC3 748288ad-ef82-4371-880e-66e107afb011 8cea7f6371973515441a224ac317252d { 'aliquot_tag': 'ALQ_224254c4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00994.RNA-Seq.genomic.A.hg38 C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 2a73af06-3e0e-48fa-89c0-5e16179d06dc.rna_seq.genomic.gdc_realn.bam 8505972456 BAM genomic harmonized CPTAC3 a1227660-6d93-4e70-9623-cb73d9aad442 8de9d081898c40702ebfaa803f8aeb59 { 'aliquot_tag': 'ALQ_f07200b6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00994.RNA-Seq.genomic.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 49145bae-112a-4932-bed6-b91545ff29c2.rna_seq.genomic.gdc_realn.bam 6397735944 BAM genomic harmonized CPTAC3 a6c3ede7-97d1-4c46-82e8-79c7ae5b4a81 495368fe9a137f9a65dfbcdc4064be5a { 'aliquot_tag': 'ALQ_7f32f516', 'gdc_sample_type': 'Primary Tumor' } +C3L-00994.RNA-Seq.genomic.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 c889976b-ac2a-4dda-a21c-422722dc59a2.rna_seq.genomic.gdc_realn.bam 5915856923 BAM genomic harmonized CPTAC3 ef02eb00-c97b-423e-8113-386e7f25bfac b842cd673dcb7908f49470e3c6abc975 { 'aliquot_tag': 'ALQ_224254c4', 'gdc_sample_type': 'Primary Tumor' } +C3L-00994.RNA-Seq.R1_L004.A C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGAAA_S16_L004_R1_001.fastq.gz 4217012607 FASTQ R1_L004 unaligned CPTAC3 b337afe8-58ea-45c3-8bd5-9ef868ded7ac 335145046fa9ad17e9b884c2907f141e { 'aliquot_tag': 'ALQ_f07200b6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00994.RNA-Seq.R1_L006.T C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 190219_UNC31-K00269_0194_AH3V53BBXY_AGTCAA_S15_L006_R1_001.fastq.gz 2961714196 FASTQ R1_L006 unaligned CPTAC3 e244d40f-dc82-4b79-8b15-3718db683b05 4298da6093d4ee3247849123c9f64ace { 'aliquot_tag': 'ALQ_7f32f516', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-00994.RNA-Seq.R2_L004.A C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGAAA_S16_L004_R2_001.fastq.gz 4193730244 FASTQ R2_L004 unaligned CPTAC3 d24d1924-a1df-48fc-8ab9-746672bce798 090cf8be2c85d5b5d82dff2aeaabe9ca { 'aliquot_tag': 'ALQ_f07200b6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-00994.RNA-Seq.R2_L006.T C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 190219_UNC31-K00269_0194_AH3V53BBXY_AGTCAA_S15_L006_R2_001.fastq.gz 3137682375 FASTQ R2_L006 unaligned CPTAC3 ebb0beb1-26e0-4250-8a86-f82f9caa3ad7 4e2bddd939fd51d48b542f5a587025c3 { 'aliquot_tag': 'ALQ_7f32f516', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-00994.RNA-Seq.T C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 20210714_P1_E4_WB7988_plate1_S52_R1_001.fastq.gz 3746814112 FASTQ unaligned CPTAC3 940b307f-9b3c-4731-9590-a4789bff91c0 6abff3cca169f78d2e52c2816d969826 +C3L-00994.RNA-Seq.T C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 20210714_P1_E4_WB7988_plate1_S52_R2_001.fastq.gz 3865482261 FASTQ unaligned CPTAC3 f0141521-60b6-41fc-ab98-9ec99250a71c 994c91fea2318c0f6f9a5c3db3e8bd56 C3L-00994.RNA-Seq.transcriptome.A.hg38 C3L-00994 HNSCC RNA-Seq tissue_normal CPT0169750009 2a73af06-3e0e-48fa-89c0-5e16179d06dc.rna_seq.transcriptome.gdc_realn.bam 11929725435 BAM transcriptome harmonized CPTAC3 c4477800-81c1-4144-858e-2ef31f051ad2 eae99bc93ca5bde4155323df456283e3 { 'aliquot_tag': 'ALQ_f07200b6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00994.RNA-Seq.transcriptome.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169730009 49145bae-112a-4932-bed6-b91545ff29c2.rna_seq.transcriptome.gdc_realn.bam 8645692363 BAM transcriptome harmonized CPTAC3 6f549774-6abc-469c-b4a5-2f0b99d0ad84 eb8f506b18063ba1a44d2eefc259ead8 { 'aliquot_tag': 'ALQ_7f32f516', 'gdc_sample_type': 'Primary Tumor' } +C3L-00994.RNA-Seq.transcriptome.T.hg38 C3L-00994 HNSCC RNA-Seq tumor CPT0169790011 c889976b-ac2a-4dda-a21c-422722dc59a2.rna_seq.transcriptome.gdc_realn.bam 4029279110 BAM transcriptome harmonized CPTAC3 4aa6ba32-1a8f-4f90-a2cd-28ed5e0760c2 396c00844fba5445ecf3ba42e5c5e18b { 'aliquot_tag': 'ALQ_224254c4', 'gdc_sample_type': 'Primary Tumor' } C3L-00994.WGS.N C3L-00994 HNSCC WGS blood_normal CPT0167170002 CPT0167170002.WholeGenome.RP-1303.bam 59024863551 BAM aligned CPTAC3 d428871e-0688-4547-ac0d-a03ae50c8712 6581cd39092de8a590be4a4de7c9a794 { 'aliquot_tag': 'ALQ_9b06121e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00994.WGS.N.hg38 C3L-00994 HNSCC WGS blood_normal CPT0167170002 822985be-35ff-4ffe-a7d7-0a85c7a5fe75_wgs_gdc_realn.bam 85957923457 BAM harmonized CPTAC3 858d63f6-daf4-4edc-a5fc-e9ff916949f9 22b8b2318c8092781a5e65edaad78f98 { 'aliquot_tag': 'ALQ_9b06121e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00994.WGS.T C3L-00994 HNSCC WGS tumor CPT0169730006 CPT0169730006.WholeGenome.RP-1303.bam 60918189969 BAM aligned CPTAC3 118f0c2b-a602-4881-803c-768495bfdd12 07073baf7d6f536f56f0ac8dbf192dff { 'aliquot_tag': 'ALQ_ef8de887', 'gdc_sample_type': 'Primary Tumor' } @@ -5138,16 +5655,19 @@ C3L-00995.miRNA-Seq.T C3L-00995 HNSCC miRNA-Seq tumor CPT0169890009 190228_UNC32 C3L-00995.miRNA-Seq.T.hg38 C3L-00995 HNSCC miRNA-Seq tumor CPT0169890009 56281c94-e3c5-411f-8b46-bb226dd7c05d_mirnaseq_gdc_realn.bam 199670875 BAM harmonized CPTAC3 8412d8e6-2c54-4f36-a495-8f0cd706507f 0ca0075d0b4adb9d0a5d3fec119b74d1 { 'aliquot_tag': 'ALQ_c4d45f62', 'gdc_sample_type': 'Primary Tumor' } C3L-00995.RNA-Seq.chimeric.A.hg38 C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 7de3d059-5571-409c-8e13-de935ac8c252.rna_seq.chimeric.gdc_realn.bam 221554086 BAM chimeric harmonized CPTAC3 985764a7-2efd-445b-bdec-bd4dacc134e1 4a53d639b5d89ae5805380227682a478 { 'aliquot_tag': 'ALQ_7858bdd6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00995.RNA-Seq.chimeric.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 af9c7410-952e-4b53-bcb7-7d0f519c9fce.rna_seq.chimeric.gdc_realn.bam 145630119 BAM chimeric harmonized CPTAC3 98f8463b-8fde-4028-9382-ec405c9fddbe ab6988686d62614d10492bbc52be590f { 'aliquot_tag': 'ALQ_c4d45f62', 'gdc_sample_type': 'Primary Tumor' } -C3L-00995.RNA-Seq.genomic.A.hg38 C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 7de3d059-5571-409c-8e13-de935ac8c252.rna_seq.genomic.gdc_realn.bam 8938218625 BAM genomic harmonized CPTAC3 6dd5fffa-bdbe-458e-bcbe-9d0e6f63731d adb1fc0a3169666aa3b37c0741ee30fa { 'aliquot_tag': 'ALQ_7858bdd6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00995.RNA-Seq.genomic.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 af9c7410-952e-4b53-bcb7-7d0f519c9fce.rna_seq.genomic.gdc_realn.bam 8285061305 BAM genomic harmonized CPTAC3 01bd5311-18fb-4203-bfa8-bf2d158d4f71 9efb6422ab491d9ca82918f71bd7e345 { 'aliquot_tag': 'ALQ_c4d45f62', 'gdc_sample_type': 'Primary Tumor' } -C3L-00995.RNA-Seq.R1_L004.T C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 190405_UNC32-K00270_0161_BH55FNBBXY_AGTTCC_S19_L004_R1_001.fastq.gz 3727644853 FASTQ R1_L004 unaligned CPTAC3 90a2979f-da7f-4f3a-a98b-4c7b755dc644 5159361960c03e18a455db775cae9f9f { 'aliquot_tag': 'ALQ_c4d45f62', 'gdc_sample_type': 'Primary Tumor' } -C3L-00995.RNA-Seq.R1_L005.A C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGGCC_S17_L005_R1_001.fastq.gz 4299287502 FASTQ R1_L005 unaligned CPTAC3 d0bbae3e-1e20-4d97-9a66-e366b90dff85 fed91d4c7c7d95cd49325845b5b6d160 { 'aliquot_tag': 'ALQ_7858bdd6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00995.RNA-Seq.R1_.T C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 20210714_P1_A8_WB7988_plate1_S8_R1_001.fastq.gz 4414270538 FASTQ R1_ unaligned CPTAC3 b155dbb0-3dc1-4731-b673-04c5f8a90f97 8e13dcd2d3907c9b06d30881014e6845 { 'aliquot_tag': 'ALQ_ddb8d8b5', 'gdc_sample_type': 'Primary Tumor' } -C3L-00995.RNA-Seq.R2_L004.T C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 190405_UNC32-K00270_0161_BH55FNBBXY_AGTTCC_S19_L004_R2_001.fastq.gz 4118706214 FASTQ R2_L004 unaligned CPTAC3 066d4958-eb61-4cdc-bae4-2eb44cf13186 68360d56dea8b89a5bb7e5d70189c3fe { 'aliquot_tag': 'ALQ_c4d45f62', 'gdc_sample_type': 'Primary Tumor' } -C3L-00995.RNA-Seq.R2_L005.A C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGGCC_S17_L005_R2_001.fastq.gz 4566648611 FASTQ R2_L005 unaligned CPTAC3 ce96da42-476f-476d-be5a-b92165f58e40 1108b82d873cf489c50328cbb6d16b92 { 'aliquot_tag': 'ALQ_7858bdd6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00995.RNA-Seq.R2_.T C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 20210714_P1_A8_WB7988_plate1_S8_R2_001.fastq.gz 4816856524 FASTQ R2_ unaligned CPTAC3 cf720689-f11f-4d47-9b22-3b7f7026f43d 09f2f9144964118937d030c19ab1924d { 'aliquot_tag': 'ALQ_ddb8d8b5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00995.RNA-Seq.chimeric.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 ed80d59e-8f5c-4b32-b6f4-3b8e4badd5d5.rna_seq.chimeric.gdc_realn.bam 58375583 BAM chimeric harmonized CPTAC3 9cc5a715-8ef5-4172-8fb4-a70a3f00b268 1f61173699ac767036da723a7aa35068 { 'aliquot_tag': 'ALQ_ddb8d8b5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00995.RNA-Seq.genomic.A.hg38 C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 7de3d059-5571-409c-8e13-de935ac8c252.rna_seq.genomic.gdc_realn.bam 8938218625 BAM genomic harmonized CPTAC3 d3f4c17a-a5a4-4af4-a72e-9ea52bfd58af adb1fc0a3169666aa3b37c0741ee30fa { 'aliquot_tag': 'ALQ_7858bdd6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00995.RNA-Seq.genomic.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 af9c7410-952e-4b53-bcb7-7d0f519c9fce.rna_seq.genomic.gdc_realn.bam 8285061305 BAM genomic harmonized CPTAC3 4f87e75b-6334-4dfe-81d9-24cc8233b4de 9efb6422ab491d9ca82918f71bd7e345 { 'aliquot_tag': 'ALQ_c4d45f62', 'gdc_sample_type': 'Primary Tumor' } +C3L-00995.RNA-Seq.genomic.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 ed80d59e-8f5c-4b32-b6f4-3b8e4badd5d5.rna_seq.genomic.gdc_realn.bam 7947243908 BAM genomic harmonized CPTAC3 03d9218c-f24c-4373-a678-d6be47169bb2 fbf8b3c03cf9882106c1eaca5a7e72b0 { 'aliquot_tag': 'ALQ_ddb8d8b5', 'gdc_sample_type': 'Primary Tumor' } +C3L-00995.RNA-Seq.R1_L004.T C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 190405_UNC32-K00270_0161_BH55FNBBXY_AGTTCC_S19_L004_R1_001.fastq.gz 3727644853 FASTQ R1_L004 unaligned CPTAC3 90a2979f-da7f-4f3a-a98b-4c7b755dc644 5159361960c03e18a455db775cae9f9f { 'aliquot_tag': 'ALQ_c4d45f62', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-00995.RNA-Seq.R1_L005.A C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGGCC_S17_L005_R1_001.fastq.gz 4299287502 FASTQ R1_L005 unaligned CPTAC3 d0bbae3e-1e20-4d97-9a66-e366b90dff85 fed91d4c7c7d95cd49325845b5b6d160 { 'aliquot_tag': 'ALQ_7858bdd6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-00995.RNA-Seq.R2_L004.T C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 190405_UNC32-K00270_0161_BH55FNBBXY_AGTTCC_S19_L004_R2_001.fastq.gz 4118706214 FASTQ R2_L004 unaligned CPTAC3 066d4958-eb61-4cdc-bae4-2eb44cf13186 68360d56dea8b89a5bb7e5d70189c3fe { 'aliquot_tag': 'ALQ_c4d45f62', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-00995.RNA-Seq.R2_L005.A C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTGGCC_S17_L005_R2_001.fastq.gz 4566648611 FASTQ R2_L005 unaligned CPTAC3 ce96da42-476f-476d-be5a-b92165f58e40 1108b82d873cf489c50328cbb6d16b92 { 'aliquot_tag': 'ALQ_7858bdd6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-00995.RNA-Seq.T C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 20210714_P1_A8_WB7988_plate1_S8_R1_001.fastq.gz 4414270538 FASTQ unaligned CPTAC3 b155dbb0-3dc1-4731-b673-04c5f8a90f97 8e13dcd2d3907c9b06d30881014e6845 +C3L-00995.RNA-Seq.T C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 20210714_P1_A8_WB7988_plate1_S8_R2_001.fastq.gz 4816856524 FASTQ unaligned CPTAC3 cf720689-f11f-4d47-9b22-3b7f7026f43d 09f2f9144964118937d030c19ab1924d C3L-00995.RNA-Seq.transcriptome.A.hg38 C3L-00995 HNSCC RNA-Seq tissue_normal CPT0169920009 7de3d059-5571-409c-8e13-de935ac8c252.rna_seq.transcriptome.gdc_realn.bam 14899315227 BAM transcriptome harmonized CPTAC3 a03df94b-b19d-46d4-b3bc-30ffe32451ae fad134891462c822fd622d5e4fcd656b { 'aliquot_tag': 'ALQ_7858bdd6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00995.RNA-Seq.transcriptome.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169890009 af9c7410-952e-4b53-bcb7-7d0f519c9fce.rna_seq.transcriptome.gdc_realn.bam 9815105765 BAM transcriptome harmonized CPTAC3 f026fb0e-96cc-4471-9da5-9b02454ed580 05af477a65a69011cc247a7b16b6b8c6 { 'aliquot_tag': 'ALQ_c4d45f62', 'gdc_sample_type': 'Primary Tumor' } +C3L-00995.RNA-Seq.transcriptome.T.hg38 C3L-00995 HNSCC RNA-Seq tumor CPT0169950011 ed80d59e-8f5c-4b32-b6f4-3b8e4badd5d5.rna_seq.transcriptome.gdc_realn.bam 5071105679 BAM transcriptome harmonized CPTAC3 c7cd18c3-c92b-44d0-85fd-74765cbf1988 03800c7dfeed42e4d0ae8ab62d7819e6 { 'aliquot_tag': 'ALQ_ddb8d8b5', 'gdc_sample_type': 'Primary Tumor' } C3L-00995.WGS.N C3L-00995 HNSCC WGS blood_normal CPT0167190002 CPT0167190002.WholeGenome.RP-1303.bam 65106845144 BAM aligned CPTAC3 d048bced-1b1c-4aa9-b252-ff0569ecba94 b2b6ba5342e6676921eab55ac0f7c3a6 { 'aliquot_tag': 'ALQ_2436ac7f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00995.WGS.N.hg38 C3L-00995 HNSCC WGS blood_normal CPT0167190002 bc308dfe-70e7-4a18-932d-5364e9fd4277_wgs_gdc_realn.bam 94454936875 BAM harmonized CPTAC3 da1895a5-e4ba-4b9f-ac70-93112be64086 ae2b9f11ca07ac171e90aa26da895a1b { 'aliquot_tag': 'ALQ_2436ac7f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00995.WGS.T C3L-00995 HNSCC WGS tumor CPT0169890006 CPT0169890006.WholeGenome.RP-1303.bam 67106050453 BAM aligned CPTAC3 e9a133b1-91d3-4965-a6f1-41acbd891748 762d0c978f28bd31aaccf799888ef8a6 { 'aliquot_tag': 'ALQ_546b42f3', 'gdc_sample_type': 'Primary Tumor' } @@ -5168,16 +5688,19 @@ C3L-00997.miRNA-Seq.T C3L-00997 HNSCC miRNA-Seq tumor CPT0123180006 190228_UNC32 C3L-00997.miRNA-Seq.T.hg38 C3L-00997 HNSCC miRNA-Seq tumor CPT0123180006 f62af030-f3fc-4074-a870-c4d7a1c2ef6a_mirnaseq_gdc_realn.bam 276759940 BAM harmonized CPTAC3 d5cb05ad-b9c3-44f0-82cd-5089f3ceab03 89dced2df143f9c1af97641724989992 { 'aliquot_tag': 'ALQ_6e3e6b3f', 'gdc_sample_type': 'Primary Tumor' } C3L-00997.RNA-Seq.chimeric.A.hg38 C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 8f6c3f2a-d3bd-4c2f-9060-0989cc88f62a.rna_seq.chimeric.gdc_realn.bam 254757366 BAM chimeric harmonized CPTAC3 5924a67e-f0ac-4df4-b817-540cf45bc77c d1be4743a2fc1a88f55f5521e97c409e { 'aliquot_tag': 'ALQ_c3e15f1e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00997.RNA-Seq.chimeric.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 59800e51-9cea-4c5e-ad55-ead51bb98d04.rna_seq.chimeric.gdc_realn.bam 194798415 BAM chimeric harmonized CPTAC3 37a380c3-db77-4512-8b1d-d59c291cf806 604be24e40a007f8e1f0defc270b005b { 'aliquot_tag': 'ALQ_6e3e6b3f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00997.RNA-Seq.genomic.A.hg38 C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 8f6c3f2a-d3bd-4c2f-9060-0989cc88f62a.rna_seq.genomic.gdc_realn.bam 7663241469 BAM genomic harmonized CPTAC3 d5c20880-dd6c-4046-9677-a870f47a7ade 7baee70c5b1912682e1377660ff09322 { 'aliquot_tag': 'ALQ_c3e15f1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00997.RNA-Seq.genomic.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 59800e51-9cea-4c5e-ad55-ead51bb98d04.rna_seq.genomic.gdc_realn.bam 9992095331 BAM genomic harmonized CPTAC3 f3c2602e-5547-4db1-84dd-8275d7c832d2 aadffbe64ee5a6b8b726fb2e6aa9e809 { 'aliquot_tag': 'ALQ_6e3e6b3f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00997.RNA-Seq.R1_L001.T C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L001_R1_001.fastq.gz 4736766213 FASTQ R1_L001 unaligned CPTAC3 ecf832e9-e81b-4dfa-8ab3-d97644678800 35d7c875ff514764d81bc90813f869fe { 'aliquot_tag': 'ALQ_6e3e6b3f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00997.RNA-Seq.R1_L004.A C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 190215_UNC32-K00270_0147_AH3VGHBBXY_CTTGTA_S15_L004_R1_001.fastq.gz 3484526883 FASTQ R1_L004 unaligned CPTAC3 f0707248-e2d8-4937-a79c-f20c13e7782c 0df32523c667a511dd7cea49bc6a5d1d { 'aliquot_tag': 'ALQ_c3e15f1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00997.RNA-Seq.R1_.T C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 20210723_P2_C2_WB7988-plate2_S26_R1_001.fastq.gz 3098836931 FASTQ R1_ unaligned CPTAC3 432f3505-e901-4f8e-9b4e-09f93d4394e9 4e5198458ce2eb1ebe477e4c2fb7986d { 'aliquot_tag': 'ALQ_62c5df02', 'gdc_sample_type': 'Primary Tumor' } -C3L-00997.RNA-Seq.R2_L001.T C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L001_R2_001.fastq.gz 5164997370 FASTQ R2_L001 unaligned CPTAC3 edfdf8c7-5c05-41a7-a9ac-156d17ed29b8 019211054f0e133b73c9d14d922a1764 { 'aliquot_tag': 'ALQ_6e3e6b3f', 'gdc_sample_type': 'Primary Tumor' } -C3L-00997.RNA-Seq.R2_L004.A C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 190215_UNC32-K00270_0147_AH3VGHBBXY_CTTGTA_S15_L004_R2_001.fastq.gz 3807487833 FASTQ R2_L004 unaligned CPTAC3 6e7b46a9-26db-4a37-be5f-ee0231a4f4a9 cbcf5d8d3df3c31e3871696a638db43f { 'aliquot_tag': 'ALQ_c3e15f1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00997.RNA-Seq.R2_.T C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 20210723_P2_C2_WB7988-plate2_S26_R2_001.fastq.gz 3235165857 FASTQ R2_ unaligned CPTAC3 44b39e6a-efa0-41d6-887d-0d38e600640b cf806bbe4c51979f880db77b754c334f { 'aliquot_tag': 'ALQ_62c5df02', 'gdc_sample_type': 'Primary Tumor' } +C3L-00997.RNA-Seq.chimeric.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 23786d14-710e-4671-bff4-da3cf5af9f73.rna_seq.chimeric.gdc_realn.bam 75855906 BAM chimeric harmonized CPTAC3 ecddbc67-110c-4a45-8f9c-efbd627197f0 44701f7d11c93e484fe93f5536749d13 { 'aliquot_tag': 'ALQ_62c5df02', 'gdc_sample_type': 'Primary Tumor' } +C3L-00997.RNA-Seq.genomic.A.hg38 C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 8f6c3f2a-d3bd-4c2f-9060-0989cc88f62a.rna_seq.genomic.gdc_realn.bam 7663241469 BAM genomic harmonized CPTAC3 aeb41b7e-9b4a-4a9e-975f-4703a28089dc 7baee70c5b1912682e1377660ff09322 { 'aliquot_tag': 'ALQ_c3e15f1e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00997.RNA-Seq.genomic.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 59800e51-9cea-4c5e-ad55-ead51bb98d04.rna_seq.genomic.gdc_realn.bam 9992095331 BAM genomic harmonized CPTAC3 8b331167-4527-4b17-a06f-ba09b797d589 aadffbe64ee5a6b8b726fb2e6aa9e809 { 'aliquot_tag': 'ALQ_6e3e6b3f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00997.RNA-Seq.genomic.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 23786d14-710e-4671-bff4-da3cf5af9f73.rna_seq.genomic.gdc_realn.bam 5471374481 BAM genomic harmonized CPTAC3 f19434ac-e240-4efd-8204-5bb10671c2b0 95e48db7c47b6e58401aea7b062e0532 { 'aliquot_tag': 'ALQ_62c5df02', 'gdc_sample_type': 'Primary Tumor' } +C3L-00997.RNA-Seq.R1_L001.T C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L001_R1_001.fastq.gz 4736766213 FASTQ R1_L001 unaligned CPTAC3 ecf832e9-e81b-4dfa-8ab3-d97644678800 35d7c875ff514764d81bc90813f869fe { 'aliquot_tag': 'ALQ_6e3e6b3f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00997.RNA-Seq.R1_L004.A C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 190215_UNC32-K00270_0147_AH3VGHBBXY_CTTGTA_S15_L004_R1_001.fastq.gz 3484526883 FASTQ R1_L004 unaligned CPTAC3 f0707248-e2d8-4937-a79c-f20c13e7782c 0df32523c667a511dd7cea49bc6a5d1d { 'aliquot_tag': 'ALQ_c3e15f1e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-00997.RNA-Seq.R2_L001.T C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L001_R2_001.fastq.gz 5164997370 FASTQ R2_L001 unaligned CPTAC3 edfdf8c7-5c05-41a7-a9ac-156d17ed29b8 019211054f0e133b73c9d14d922a1764 { 'aliquot_tag': 'ALQ_6e3e6b3f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00997.RNA-Seq.R2_L004.A C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 190215_UNC32-K00270_0147_AH3VGHBBXY_CTTGTA_S15_L004_R2_001.fastq.gz 3807487833 FASTQ R2_L004 unaligned CPTAC3 6e7b46a9-26db-4a37-be5f-ee0231a4f4a9 cbcf5d8d3df3c31e3871696a638db43f { 'aliquot_tag': 'ALQ_c3e15f1e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-00997.RNA-Seq.T C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 20210723_P2_C2_WB7988-plate2_S26_R1_001.fastq.gz 3098836931 FASTQ unaligned CPTAC3 432f3505-e901-4f8e-9b4e-09f93d4394e9 4e5198458ce2eb1ebe477e4c2fb7986d +C3L-00997.RNA-Seq.T C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 20210723_P2_C2_WB7988-plate2_S26_R2_001.fastq.gz 3235165857 FASTQ unaligned CPTAC3 44b39e6a-efa0-41d6-887d-0d38e600640b cf806bbe4c51979f880db77b754c334f C3L-00997.RNA-Seq.transcriptome.A.hg38 C3L-00997 HNSCC RNA-Seq tissue_normal CPT0123190009 8f6c3f2a-d3bd-4c2f-9060-0989cc88f62a.rna_seq.transcriptome.gdc_realn.bam 9856931868 BAM transcriptome harmonized CPTAC3 ea83c9b8-0062-40fc-8b68-193f7c2ced7d e3590e3d87655a0f8e3eda602366e91c { 'aliquot_tag': 'ALQ_c3e15f1e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00997.RNA-Seq.transcriptome.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123180006 59800e51-9cea-4c5e-ad55-ead51bb98d04.rna_seq.transcriptome.gdc_realn.bam 13125928254 BAM transcriptome harmonized CPTAC3 5f893703-b6df-4b34-a3bd-7ac96f394337 c2f8ff78ea2b1f9052a4ace9af50b948 { 'aliquot_tag': 'ALQ_6e3e6b3f', 'gdc_sample_type': 'Primary Tumor' } +C3L-00997.RNA-Seq.transcriptome.T.hg38 C3L-00997 HNSCC RNA-Seq tumor CPT0123210011 23786d14-710e-4671-bff4-da3cf5af9f73.rna_seq.transcriptome.gdc_realn.bam 2049994455 BAM transcriptome harmonized CPTAC3 9ff88287-ad08-496c-8226-91b39f87d868 d28f1d7d052922220fda08ef222beaee { 'aliquot_tag': 'ALQ_62c5df02', 'gdc_sample_type': 'Primary Tumor' } C3L-00997.WGS.N C3L-00997 HNSCC WGS blood_normal CPT0124760002 CPT0124760002.WholeGenome.RP-1303.bam 60254780382 BAM aligned CPTAC3 fc38aa9c-e395-4060-b519-a28e277483d5 f5c06d6418788f1baa328c5100287fba { 'aliquot_tag': 'ALQ_c59dccd4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00997.WGS.N.hg38 C3L-00997 HNSCC WGS blood_normal CPT0124760002 92aa3418-7075-4520-ae3b-21a3ebbe0b27_wgs_gdc_realn.bam 87076793354 BAM harmonized CPTAC3 74db5359-40ee-4ae9-b386-3e6b79800f6e a978e5ad8595706c0ef11e2d481115b7 { 'aliquot_tag': 'ALQ_c59dccd4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00997.WGS.T C3L-00997 HNSCC WGS tumor CPT0123180009 CPT0123180009.WholeGenome.RP-1303.bam 56145305636 BAM aligned CPTAC3 c9c33913-d553-4fbb-b527-0929fc2e4afe 0db402d433be9178eae3a7642ac1fb14 { 'aliquot_tag': 'ALQ_fe8176ae', 'gdc_sample_type': 'Primary Tumor' } @@ -5198,16 +5721,19 @@ C3L-00999.miRNA-Seq.T C3L-00999 HNSCC miRNA-Seq tumor CPT0123260006 190228_UNC32 C3L-00999.miRNA-Seq.T.hg38 C3L-00999 HNSCC miRNA-Seq tumor CPT0123260006 381a8e67-2de2-4837-b7a9-98378c91c6f8_mirnaseq_gdc_realn.bam 234271060 BAM harmonized CPTAC3 cff6fd71-8897-48c9-a471-f45f031e0db1 ece753ad9a21e0100291d0fdbbf4aa3f { 'aliquot_tag': 'ALQ_579aa7f0', 'gdc_sample_type': 'Primary Tumor' } C3L-00999.RNA-Seq.chimeric.A.hg38 C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 2544d900-8e7b-41ef-b716-8936707cbabe.rna_seq.chimeric.gdc_realn.bam 140187098 BAM chimeric harmonized CPTAC3 6739ce5f-fe50-4d8a-8ea7-33ee85371043 9510fe0d3cf3105d8a221b5a05731144 { 'aliquot_tag': 'ALQ_78150400', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00999.RNA-Seq.chimeric.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 210ba0b2-c35d-4e42-b5ed-28e5b65bb727.rna_seq.chimeric.gdc_realn.bam 262651946 BAM chimeric harmonized CPTAC3 a23575d6-877a-4f63-92ce-c01feabeb44b 929b3939cfccc12154f1d2fb76c474a8 { 'aliquot_tag': 'ALQ_579aa7f0', 'gdc_sample_type': 'Primary Tumor' } -C3L-00999.RNA-Seq.genomic.A.hg38 C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 2544d900-8e7b-41ef-b716-8936707cbabe.rna_seq.genomic.gdc_realn.bam 8257335894 BAM genomic harmonized CPTAC3 c136fd74-d70a-44be-b64a-c6aeedb51195 311dd2f2a6a9a9235456ac7f59380615 { 'aliquot_tag': 'ALQ_78150400', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00999.RNA-Seq.genomic.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 210ba0b2-c35d-4e42-b5ed-28e5b65bb727.rna_seq.genomic.gdc_realn.bam 7997407135 BAM genomic harmonized CPTAC3 3a9e5314-8bc8-4780-8516-b2c57fd38ed2 6c3316742d5677589a7654fed405e8c5 { 'aliquot_tag': 'ALQ_579aa7f0', 'gdc_sample_type': 'Primary Tumor' } -C3L-00999.RNA-Seq.R1_L001.A C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 190219_UNC31-K00269_0194_AH3V53BBXY_GTCCGC_S4_L001_R1_001.fastq.gz 3767723611 FASTQ R1_L001 unaligned CPTAC3 95ea98d0-3858-4fb3-808a-c1ead8fcb4e6 6a630e20fd727a48aab6c1d71c4a2f2a { 'aliquot_tag': 'ALQ_78150400', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00999.RNA-Seq.R1_L001.T C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L001_R1_001.fastq.gz 3602337799 FASTQ R1_L001 unaligned CPTAC3 14ecbf5e-c51a-43e9-9b63-bb84351fde6b 2e042203720deb4df207d8cb1202b2bf { 'aliquot_tag': 'ALQ_579aa7f0', 'gdc_sample_type': 'Primary Tumor' } -C3L-00999.RNA-Seq.R1_.T C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 20210806_P4_1_WB7988-plate4_S26_R1_001.fastq.gz 5986804492 FASTQ R1_ unaligned CPTAC3 0c36ce5c-ad53-4928-a55c-e2a256d211d6 362e02d2c2fb69dded0466c1c68d84ce { 'aliquot_tag': 'ALQ_52b594c3', 'gdc_sample_type': 'Primary Tumor' } -C3L-00999.RNA-Seq.R2_L001.A C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 190219_UNC31-K00269_0194_AH3V53BBXY_GTCCGC_S4_L001_R2_001.fastq.gz 4296533978 FASTQ R2_L001 unaligned CPTAC3 c04fed22-64f2-4f6d-80de-e10160ddef1f 480ccf50a7cf70c815b7806f5fabc218 { 'aliquot_tag': 'ALQ_78150400', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-00999.RNA-Seq.R2_L001.T C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L001_R2_001.fastq.gz 3982917594 FASTQ R2_L001 unaligned CPTAC3 5e996749-5d5a-455f-9bf5-ca45e9d5da48 3c82b0ffe38f86f4911fdd1a32c54755 { 'aliquot_tag': 'ALQ_579aa7f0', 'gdc_sample_type': 'Primary Tumor' } -C3L-00999.RNA-Seq.R2_.T C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 20210806_P4_1_WB7988-plate4_S26_R2_001.fastq.gz 5838493414 FASTQ R2_ unaligned CPTAC3 b50ef8cf-0b84-48a5-8a5e-5ba00ab97f46 ea53c22b118abee045e3ae7fc7e0df6d { 'aliquot_tag': 'ALQ_52b594c3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00999.RNA-Seq.chimeric.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 34242a6b-7196-4c6f-b74c-83c0c2d81c2a.rna_seq.chimeric.gdc_realn.bam 50079793 BAM chimeric harmonized CPTAC3 f9bef0e9-efd3-44e2-9a12-70a220251f4e 425771ec3edac2b99bebb6689e076f04 { 'aliquot_tag': 'ALQ_52b594c3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00999.RNA-Seq.genomic.A.hg38 C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 2544d900-8e7b-41ef-b716-8936707cbabe.rna_seq.genomic.gdc_realn.bam 8257335894 BAM genomic harmonized CPTAC3 f360f6f7-1035-4c20-82ea-be95f440322d 311dd2f2a6a9a9235456ac7f59380615 { 'aliquot_tag': 'ALQ_78150400', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-00999.RNA-Seq.genomic.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 210ba0b2-c35d-4e42-b5ed-28e5b65bb727.rna_seq.genomic.gdc_realn.bam 7997407135 BAM genomic harmonized CPTAC3 7ac9f8d0-7fdf-4108-88c0-d54a03a2add2 6c3316742d5677589a7654fed405e8c5 { 'aliquot_tag': 'ALQ_579aa7f0', 'gdc_sample_type': 'Primary Tumor' } +C3L-00999.RNA-Seq.genomic.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 34242a6b-7196-4c6f-b74c-83c0c2d81c2a.rna_seq.genomic.gdc_realn.bam 30378571373 BAM genomic harmonized CPTAC3 f8500269-6ebd-4f90-9be6-289de1adbb32 f72d3a529d8c83bf848094bde579edfd { 'aliquot_tag': 'ALQ_52b594c3', 'gdc_sample_type': 'Primary Tumor' } +C3L-00999.RNA-Seq.R1_L001.A C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 190219_UNC31-K00269_0194_AH3V53BBXY_GTCCGC_S4_L001_R1_001.fastq.gz 3767723611 FASTQ R1_L001 unaligned CPTAC3 95ea98d0-3858-4fb3-808a-c1ead8fcb4e6 6a630e20fd727a48aab6c1d71c4a2f2a { 'aliquot_tag': 'ALQ_78150400', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-00999.RNA-Seq.R1_L001.T C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L001_R1_001.fastq.gz 3602337799 FASTQ R1_L001 unaligned CPTAC3 14ecbf5e-c51a-43e9-9b63-bb84351fde6b 2e042203720deb4df207d8cb1202b2bf { 'aliquot_tag': 'ALQ_579aa7f0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-00999.RNA-Seq.R2_L001.A C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 190219_UNC31-K00269_0194_AH3V53BBXY_GTCCGC_S4_L001_R2_001.fastq.gz 4296533978 FASTQ R2_L001 unaligned CPTAC3 c04fed22-64f2-4f6d-80de-e10160ddef1f 480ccf50a7cf70c815b7806f5fabc218 { 'aliquot_tag': 'ALQ_78150400', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-00999.RNA-Seq.R2_L001.T C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L001_R2_001.fastq.gz 3982917594 FASTQ R2_L001 unaligned CPTAC3 5e996749-5d5a-455f-9bf5-ca45e9d5da48 3c82b0ffe38f86f4911fdd1a32c54755 { 'aliquot_tag': 'ALQ_579aa7f0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-00999.RNA-Seq.T C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 20210806_P4_1_WB7988-plate4_S26_R1_001.fastq.gz 5986804492 FASTQ unaligned CPTAC3 0c36ce5c-ad53-4928-a55c-e2a256d211d6 362e02d2c2fb69dded0466c1c68d84ce +C3L-00999.RNA-Seq.T C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 20210806_P4_1_WB7988-plate4_S26_R2_001.fastq.gz 5838493414 FASTQ unaligned CPTAC3 b50ef8cf-0b84-48a5-8a5e-5ba00ab97f46 ea53c22b118abee045e3ae7fc7e0df6d C3L-00999.RNA-Seq.transcriptome.A.hg38 C3L-00999 HNSCC RNA-Seq tissue_normal CPT0123280009 2544d900-8e7b-41ef-b716-8936707cbabe.rna_seq.transcriptome.gdc_realn.bam 12308461069 BAM transcriptome harmonized CPTAC3 1e6b1678-ee8b-485f-97ab-6bd547829fad a9f21c3c103d9ca9efdab64d7ac84cfe { 'aliquot_tag': 'ALQ_78150400', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-00999.RNA-Seq.transcriptome.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123260006 210ba0b2-c35d-4e42-b5ed-28e5b65bb727.rna_seq.transcriptome.gdc_realn.bam 9764784210 BAM transcriptome harmonized CPTAC3 a68da4aa-466b-492e-b033-f85bfd2025bc 090bd5627a274ab109e751bd5d023a95 { 'aliquot_tag': 'ALQ_579aa7f0', 'gdc_sample_type': 'Primary Tumor' } +C3L-00999.RNA-Seq.transcriptome.T.hg38 C3L-00999 HNSCC RNA-Seq tumor CPT0123290011 34242a6b-7196-4c6f-b74c-83c0c2d81c2a.rna_seq.transcriptome.gdc_realn.bam 4492905466 BAM transcriptome harmonized CPTAC3 89076a3b-2a25-4498-bf64-f53952f87fd2 030cf9f329e0ba517ed2299130f4b2de { 'aliquot_tag': 'ALQ_52b594c3', 'gdc_sample_type': 'Primary Tumor' } C3L-00999.WGS.N C3L-00999 HNSCC WGS blood_normal CPT0124780002 CPT0124780002.WholeGenome.RP-1303.bam 61102256664 BAM aligned CPTAC3 45384f8b-7271-44cc-8188-e6e24235becd e1455436fc1292edc0ab798a480bc4ac { 'aliquot_tag': 'ALQ_7aad72b5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00999.WGS.N.hg38 C3L-00999 HNSCC WGS blood_normal CPT0124780002 a78e438f-2565-4383-b625-43310079ac32_wgs_gdc_realn.bam 88876590392 BAM harmonized CPTAC3 03d51c99-8605-4ad4-8427-0e0c40a00af6 45312d18ec85ac4d06425a4bbcca2c8e { 'aliquot_tag': 'ALQ_7aad72b5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-00999.WGS.T C3L-00999 HNSCC WGS tumor CPT0123260009 CPT0123260009.WholeGenome.RP-1303.bam 57573204745 BAM aligned CPTAC3 67dd609a-95b4-4cf6-9c89-4376a8904f63 a2ff8d83e6d3e93ad624ac60144afd3b { 'aliquot_tag': 'ALQ_c725ba61', 'gdc_sample_type': 'Primary Tumor' } @@ -5228,12 +5754,12 @@ C3L-01000.miRNA-Seq.T C3L-01000 LSCC miRNA-Seq tumor CPT0123350006 181219_UNC31- C3L-01000.miRNA-Seq.T.hg38 C3L-01000 LSCC miRNA-Seq tumor CPT0123350006 779d5564-8d58-415c-afe5-20565a018e30_mirnaseq_gdc_realn.bam 255553070 BAM harmonized CPTAC3 5d9ebe83-4420-4257-8139-f1a0d85194be a322a78c20f9e7b708c883a6eded3e20 { 'aliquot_tag': 'ALQ_db660e85', 'gdc_sample_type': 'Primary Tumor' } C3L-01000.RNA-Seq.chimeric.A.hg38 C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 e17f48eb-185f-4045-b650-8c760d37f9a1.rna_seq.chimeric.gdc_realn.bam 36279625 BAM chimeric harmonized CPTAC3 6a30ff94-5ed4-471d-9e0b-d359112c9395 b70d95ee2828b8432f66c0eccdc37044 { 'aliquot_tag': 'ALQ_31194074', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01000.RNA-Seq.chimeric.T.hg38 C3L-01000 LSCC RNA-Seq tumor CPT0123350006 7c7ed348-b6bb-4ae2-a682-eab5e4dc38c5.rna_seq.chimeric.gdc_realn.bam 40232863 BAM chimeric harmonized CPTAC3 1775fda5-e51f-4e2b-8dc7-93762dc3c621 9b9fcf37a469ce33701a96f60f46dd9d { 'aliquot_tag': 'ALQ_db660e85', 'gdc_sample_type': 'Primary Tumor' } -C3L-01000.RNA-Seq.genomic.A.hg38 C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 e17f48eb-185f-4045-b650-8c760d37f9a1.rna_seq.genomic.gdc_realn.bam 9974367835 BAM genomic harmonized CPTAC3 4b193b54-08f4-44f0-8da0-e2edf629527f 4197ff36aab8d755b7d8146079200443 { 'aliquot_tag': 'ALQ_31194074', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01000.RNA-Seq.genomic.T.hg38 C3L-01000 LSCC RNA-Seq tumor CPT0123350006 7c7ed348-b6bb-4ae2-a682-eab5e4dc38c5.rna_seq.genomic.gdc_realn.bam 9093928103 BAM genomic harmonized CPTAC3 d7ddfe1b-ab2e-49a1-b462-1807587556a2 86faf7722df51a352f731c9ebd45a90f { 'aliquot_tag': 'ALQ_db660e85', 'gdc_sample_type': 'Primary Tumor' } -C3L-01000.RNA-Seq.R1_L003.A C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGATGT_S11_L003_R1_001.fastq.gz 4738534771 FASTQ R1_L003 unaligned CPTAC3 84652f9c-24e8-4689-806b-b782c8223291 983add528c7229b541481549bf8d6d1c { 'aliquot_tag': 'ALQ_31194074', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01000.RNA-Seq.R1_L006.T C3L-01000 LSCC RNA-Seq tumor CPT0123350006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACTTGA_S24_L006_R1_001.fastq.gz 4155612489 FASTQ R1_L006 unaligned CPTAC3 d36bfa58-2428-4e27-9746-0edb7b070682 5af94a04acca392a8e2fe2acc82584c7 { 'aliquot_tag': 'ALQ_db660e85', 'gdc_sample_type': 'Primary Tumor' } -C3L-01000.RNA-Seq.R2_L003.A C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGATGT_S11_L003_R2_001.fastq.gz 5002039235 FASTQ R2_L003 unaligned CPTAC3 d5b739c6-d2b8-48ef-be80-dbeb2933596a ddf33b50efdad5fce677a5c0f128d170 { 'aliquot_tag': 'ALQ_31194074', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01000.RNA-Seq.R2_L006.T C3L-01000 LSCC RNA-Seq tumor CPT0123350006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACTTGA_S24_L006_R2_001.fastq.gz 4399334101 FASTQ R2_L006 unaligned CPTAC3 b1f9fcb7-9569-49ed-a5c4-10d7f4ba73fa 7c0ff3b69f6b17a25be73ce9a87e008a { 'aliquot_tag': 'ALQ_db660e85', 'gdc_sample_type': 'Primary Tumor' } +C3L-01000.RNA-Seq.genomic.A.hg38 C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 e17f48eb-185f-4045-b650-8c760d37f9a1.rna_seq.genomic.gdc_realn.bam 9974367835 BAM genomic harmonized CPTAC3 4ec53294-5416-421d-b8e9-e7cbb6e2a75c 4197ff36aab8d755b7d8146079200443 { 'aliquot_tag': 'ALQ_31194074', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01000.RNA-Seq.genomic.T.hg38 C3L-01000 LSCC RNA-Seq tumor CPT0123350006 7c7ed348-b6bb-4ae2-a682-eab5e4dc38c5.rna_seq.genomic.gdc_realn.bam 9093928103 BAM genomic harmonized CPTAC3 683cd9f3-dcc4-409f-a29c-edbb3c0a6e3e 86faf7722df51a352f731c9ebd45a90f { 'aliquot_tag': 'ALQ_db660e85', 'gdc_sample_type': 'Primary Tumor' } +C3L-01000.RNA-Seq.R1_L003.A C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGATGT_S11_L003_R1_001.fastq.gz 4738534771 FASTQ R1_L003 unaligned CPTAC3 84652f9c-24e8-4689-806b-b782c8223291 983add528c7229b541481549bf8d6d1c { 'aliquot_tag': 'ALQ_31194074', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-01000.RNA-Seq.R1_L006.T C3L-01000 LSCC RNA-Seq tumor CPT0123350006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACTTGA_S24_L006_R1_001.fastq.gz 4155612489 FASTQ R1_L006 unaligned CPTAC3 d36bfa58-2428-4e27-9746-0edb7b070682 5af94a04acca392a8e2fe2acc82584c7 { 'aliquot_tag': 'ALQ_db660e85', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01000.RNA-Seq.R2_L003.A C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGATGT_S11_L003_R2_001.fastq.gz 5002039235 FASTQ R2_L003 unaligned CPTAC3 d5b739c6-d2b8-48ef-be80-dbeb2933596a ddf33b50efdad5fce677a5c0f128d170 { 'aliquot_tag': 'ALQ_31194074', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-01000.RNA-Seq.R2_L006.T C3L-01000 LSCC RNA-Seq tumor CPT0123350006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACTTGA_S24_L006_R2_001.fastq.gz 4399334101 FASTQ R2_L006 unaligned CPTAC3 b1f9fcb7-9569-49ed-a5c4-10d7f4ba73fa 7c0ff3b69f6b17a25be73ce9a87e008a { 'aliquot_tag': 'ALQ_db660e85', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-01000.RNA-Seq.transcriptome.A.hg38 C3L-01000 LSCC RNA-Seq tissue_normal CPT0123370009 e17f48eb-185f-4045-b650-8c760d37f9a1.rna_seq.transcriptome.gdc_realn.bam 12524703182 BAM transcriptome harmonized CPTAC3 806c269a-3304-4f8a-90cf-fdce3f74a6eb e49cec3d44b1aa0916782a58521a4e6f { 'aliquot_tag': 'ALQ_31194074', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01000.RNA-Seq.transcriptome.T.hg38 C3L-01000 LSCC RNA-Seq tumor CPT0123350006 7c7ed348-b6bb-4ae2-a682-eab5e4dc38c5.rna_seq.transcriptome.gdc_realn.bam 10419126278 BAM transcriptome harmonized CPTAC3 1ed09984-d83f-47a8-8d13-e91e812d7d13 fa2755d164b87398296ad91a21a47926 { 'aliquot_tag': 'ALQ_db660e85', 'gdc_sample_type': 'Primary Tumor' } C3L-01000.WGS.A C3L-01000 LSCC WGS tissue_normal CPT0123370006 CPT0123370006.WholeGenome.RP-1303.bam 58108600663 BAM aligned CPTAC3 191a5c8c-1380-4b7c-b754-419066421ad1 9d7b3e1aee2428c2d21fa24e8a832b4c { 'aliquot_tag': 'ALQ_a1a65de5', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -5255,9 +5781,9 @@ C3L-01031.MethArray.Red.T C3L-01031 PDA Methylation Array tumor CPT0127270006 20 C3L-01031.miRNA-Seq.T C3L-01031 PDA miRNA-Seq tumor CPT0127270009 181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 227915261 BAM unaligned CPTAC3 1aa17a45-f236-4e1a-8aac-2cc50045a892 c8385ee061a7d348f828403668a3f7c5 { 'aliquot_tag': 'ALQ_e0ab7c2', 'gdc_sample_type': 'Primary Tumor' } C3L-01031.miRNA-Seq.T.hg38 C3L-01031 PDA miRNA-Seq tumor CPT0127270009 721c9c8a-a3bd-45c3-a48f-4deca349a523_mirnaseq_gdc_realn.bam 249699282 BAM harmonized CPTAC3 df290789-88d2-40c9-8cd2-7b45e1503108 c7862d2e5212fa1a78a8be73d64bfc35 { 'aliquot_tag': 'ALQ_e0ab7c2', 'gdc_sample_type': 'Primary Tumor' } C3L-01031.RNA-Seq.chimeric.T.hg38 C3L-01031 PDA RNA-Seq tumor CPT0127270009 a3356e9e-4919-41cd-a0f1-246c533e4883.rna_seq.chimeric.gdc_realn.bam 114485904 BAM chimeric harmonized CPTAC3 dedd8a89-b9a6-4962-a44d-feff733a6b12 03e8335099081fbeaff6d540e2c9b0ea { 'aliquot_tag': 'ALQ_e0ab7c2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01031.RNA-Seq.genomic.T.hg38 C3L-01031 PDA RNA-Seq tumor CPT0127270009 a3356e9e-4919-41cd-a0f1-246c533e4883.rna_seq.genomic.gdc_realn.bam 8725779320 BAM genomic harmonized CPTAC3 1257bc5f-a415-4643-951a-9702e5f0bcf6 372a77f200d986e940f0fb1b7a4699cc { 'aliquot_tag': 'ALQ_e0ab7c2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01031.RNA-Seq.R1_L007.T C3L-01031 PDA RNA-Seq tumor CPT0127270009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R1_001.fastq.gz 4124718224 FASTQ R1_L007 unaligned CPTAC3 a26dd3d2-e43c-4e14-a1ed-3bfdf45e8a1a d76b0c3d24fc8fbaeb967716cf219c86 { 'aliquot_tag': 'ALQ_e0ab7c2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01031.RNA-Seq.R2_L007.T C3L-01031 PDA RNA-Seq tumor CPT0127270009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R2_001.fastq.gz 4413825785 FASTQ R2_L007 unaligned CPTAC3 91301da0-ce18-46c8-af66-e47970a76390 ea35c50ac27801d429e0129ff5b85b95 { 'aliquot_tag': 'ALQ_e0ab7c2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01031.RNA-Seq.genomic.T.hg38 C3L-01031 PDA RNA-Seq tumor CPT0127270009 a3356e9e-4919-41cd-a0f1-246c533e4883.rna_seq.genomic.gdc_realn.bam 8725779320 BAM genomic harmonized CPTAC3 5841f0bd-509d-4d70-841d-d6248b0afdcb 372a77f200d986e940f0fb1b7a4699cc { 'aliquot_tag': 'ALQ_e0ab7c2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01031.RNA-Seq.R1_L007.T C3L-01031 PDA RNA-Seq tumor CPT0127270009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R1_001.fastq.gz 4124718224 FASTQ R1_L007 unaligned CPTAC3 a26dd3d2-e43c-4e14-a1ed-3bfdf45e8a1a d76b0c3d24fc8fbaeb967716cf219c86 { 'aliquot_tag': 'ALQ_e0ab7c2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01031.RNA-Seq.R2_L007.T C3L-01031 PDA RNA-Seq tumor CPT0127270009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R2_001.fastq.gz 4413825785 FASTQ R2_L007 unaligned CPTAC3 91301da0-ce18-46c8-af66-e47970a76390 ea35c50ac27801d429e0129ff5b85b95 { 'aliquot_tag': 'ALQ_e0ab7c2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-01031.RNA-Seq.transcriptome.T.hg38 C3L-01031 PDA RNA-Seq tumor CPT0127270009 a3356e9e-4919-41cd-a0f1-246c533e4883.rna_seq.transcriptome.gdc_realn.bam 12564205246 BAM transcriptome harmonized CPTAC3 f26b581f-deba-4e09-8140-fc915beb3844 d83e4cd6e5aece283b727fd645c6fd13 { 'aliquot_tag': 'ALQ_e0ab7c2', 'gdc_sample_type': 'Primary Tumor' } C3L-01031.Targeted.T C3L-01031 PDA Targeted Sequencing tumor CPT0127270006_1 CPT0127270006_1.CustomSelection.RP-1303.PDO-18786.bam 5045331329 BAM aligned CPTAC3 9297de8f-2235-468f-bda8-39a96769338c 62bbea559cf4dd21d2a9bbf6cfb9da4a { 'aliquot_tag': 'ALQ_8ab1898a', 'gdc_sample_type': 'Primary Tumor' } C3L-01031.Targeted.T.hg38 C3L-01031 PDA Targeted Sequencing tumor CPT0127270006_1 00638581-641f-489f-b9a7-e3977e1f205a_targetedsequencing_gdc_realn.bam 7031936170 BAM harmonized CPTAC3 16db0593-aa61-4760-9a5f-7e7e45335e30 f3cda9152aeb15ace714b0965c027b67 { 'aliquot_tag': 'ALQ_8ab1898a', 'gdc_sample_type': 'Primary Tumor' } @@ -5287,11 +5813,11 @@ C3L-01032.DUP_b3813d23.WXS.T C3L-01032 PDA WXS tumor CPT0170510026 CPT0170510026 C3L-01032.DUP_b3813d23.WXS.T.hg38 C3L-01032 PDA WXS tumor CPT0170510026 b2031366-1cc1-48f4-a4d2-8754ad806cb6_wxs_gdc_realn.bam 63667596295 BAM harmonized CPTAC3 e31e9424-a0b1-41c1-b75c-f3af979cc6f0 438e2c980054b4a65e3528fa4c5f954c { 'aliquot_tag': 'DUP_b3813d23', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA Pilot - bulk-derived DNA' } C3L-01032.miRNA-Seq.T C3L-01032 PDA miRNA-Seq tumor CPT0170510016 190108_UNC31-K00269_0176_AHYGLVBBXX_ACAGTG_S5_L002_R1_001.unaln.bam 202131610 BAM unaligned CPTAC3 97f69125-efcc-4e5a-9416-5510fff2fd5a 8522ffb627d0623e984b028cca8d2a55 { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor' } C3L-01032.miRNA-Seq.T.hg38 C3L-01032 PDA miRNA-Seq tumor CPT0170510016 89b8448a-02ed-45c9-9838-b41e58a9dfbe_mirnaseq_gdc_realn.bam 223690190 BAM harmonized CPTAC3 532ec148-d2c3-42df-8d24-b9a4a378fb83 041f9c1c038cc4a0b7866e5014d68830 { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01032.RNA-Seq.chimeric.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 196e93f1-0a02-45f5-838a-2d60eb18695c.rna_seq.chimeric.gdc_realn.bam 23892892 BAM chimeric harmonized CPTAC3 d3576bf1-0570-4868-a70c-6f6763660e94 ccddca618ac1d6b1d84bc2f16196dec2 { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01032.RNA-Seq.genomic.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 196e93f1-0a02-45f5-838a-2d60eb18695c.rna_seq.genomic.gdc_realn.bam 17035648553 BAM genomic harmonized CPTAC3 b0c75e59-e3ae-4f50-ab57-508ff8470d25 2b8f4965ea14826bdc17b30318399454 { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01032.RNA-Seq.R1_L001.T C3L-01032 PDA RNA-Seq tumor CPT0170510016 190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4897431197 FASTQ R1_L001 unaligned CPTAC3 7a970896-a786-4466-8b48-f0fc47eb3573 9b6ddcb70a653398f6933d4ba2185b9e { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01032.RNA-Seq.R2_L001.T C3L-01032 PDA RNA-Seq tumor CPT0170510016 190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 5416472857 FASTQ R2_L001 unaligned CPTAC3 178f804a-0edc-4761-9125-5104b06a2443 308e5b22074d74b762d68cc3523e63da { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01032.RNA-Seq.transcriptome.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 196e93f1-0a02-45f5-838a-2d60eb18695c.rna_seq.transcriptome.gdc_realn.bam 10916791958 BAM transcriptome harmonized CPTAC3 c2caa46b-1283-4ca6-ab9d-4e581a3380df 9a7eec8fd93fe3e5fa158c34dd6aee48 { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor' } +C3L-01032.RNA-Seq.chimeric.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 2e0ecddb-3b5a-4b71-a183-5ffc49c3aaae.rna_seq.chimeric.gdc_realn.bam 23880671 BAM chimeric harmonized CPTAC3 e908fecf-8666-4795-b2f6-655b6c20e2a0 77a7bed59ae28d41102bded1f6b1bcbc { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor' } +C3L-01032.RNA-Seq.genomic.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 2e0ecddb-3b5a-4b71-a183-5ffc49c3aaae.rna_seq.genomic.gdc_realn.bam 17036357259 BAM genomic harmonized CPTAC3 435b8294-0b07-4ee7-a327-0b9780e9212d 70c99b79aad0bff32cdaad40e35a2088 { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor' } +C3L-01032.RNA-Seq.R1_L001.T C3L-01032 PDA RNA-Seq tumor CPT0170510016 190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4897431197 FASTQ R1_L001 unaligned CPTAC3 7a970896-a786-4466-8b48-f0fc47eb3573 9b6ddcb70a653398f6933d4ba2185b9e { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01032.RNA-Seq.R2_L001.T C3L-01032 PDA RNA-Seq tumor CPT0170510016 190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 5416472857 FASTQ R2_L001 unaligned CPTAC3 178f804a-0edc-4761-9125-5104b06a2443 308e5b22074d74b762d68cc3523e63da { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01032.RNA-Seq.transcriptome.T.hg38 C3L-01032 PDA RNA-Seq tumor CPT0170510016 2e0ecddb-3b5a-4b71-a183-5ffc49c3aaae.rna_seq.transcriptome.gdc_realn.bam 11875234210 BAM transcriptome harmonized CPTAC3 54a5d162-6269-4b2b-a882-b1578b1ee6b9 656c51283fa8df3364c6e33b89b0e81f { 'aliquot_tag': 'ALQ_98ac6ee0', 'gdc_sample_type': 'Primary Tumor' } C3L-01032.WGS.N C3L-01032 PDA WGS blood_normal CPT0167270002 CPT0167270002.WholeGenome.RP-1303.bam 59559164807 BAM aligned CPTAC3 ec689404-8366-4793-aa48-7d7faacc975f b6156467e3763b1c39238fdb86bfd9ab { 'aliquot_tag': 'ALQ_1d9260b0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01032.WGS.N.hg38 C3L-01032 PDA WGS blood_normal CPT0167270002 39fbddfe-218a-4a59-865e-4e4d45f136f7_wgs_gdc_realn.bam 87485264872 BAM harmonized CPTAC3 fd2f7033-bbf5-4123-8239-e441e0142ef6 e1d24bcd2aa88684e95827a5c8540617 { 'aliquot_tag': 'ALQ_1d9260b0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01032.WXS.N C3L-01032 PDA WXS blood_normal CPT0167270002 CPT0167270002.WholeExome.RP-1303.bam 29254406550 BAM aligned CPTAC3 6f5110f3-ee1b-4870-846a-e4a07daaf8c7 7a98e97bea7a0b25e892afd9bb57eec9 { 'aliquot_tag': 'ALQ_1d9260b0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5302,11 +5828,11 @@ C3L-01033.MethArray.Red.A C3L-01033 CCRCC Methylation Array tissue_normal CPT017 C3L-01033.MethArray.Red.T C3L-01033 CCRCC Methylation Array tumor CPT0170070006 203219670117_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 72ccf6d5-df17-4ed4-8b87-b4f8111d1b10 a35f5f79c831c40816b23bc24da0ff8f { 'aliquot_tag': 'ALQ_5e3a3bb2', 'gdc_sample_type': 'Primary Tumor' } C3L-01033.miRNA-Seq.T C3L-01033 CCRCC miRNA-Seq tumor CPT0170070009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L004_R1_001.unaln.bam 180494762 BAM unaligned CPTAC3 ae1f5daf-b9de-413f-a7ab-b43744eb7076 20a4192b9759a32fac43129e31f7b5df { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor' } C3L-01033.miRNA-Seq.T.hg38 C3L-01033 CCRCC miRNA-Seq tumor CPT0170070009 6ee3b524-eec5-451d-b5ba-c8e7b3862ceb_mirnaseq_gdc_realn.bam 204821721 BAM harmonized CPTAC3 e598e820-da3f-4d73-bb7f-665c07693337 e02347ddf297303698f41eb11891180d { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor' } -C3L-01033.RNA-Seq.chimeric.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 86a59a0e-9b43-4316-8e0b-4ca40b504295.rna_seq.chimeric.gdc_realn.bam 24378373 BAM chimeric harmonized CPTAC3 40f272f0-5725-4849-bb02-2d3cb9acab57 e754e45bcc2f6c925650a064ef4ac250 { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor' } -C3L-01033.RNA-Seq.genomic.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 86a59a0e-9b43-4316-8e0b-4ca40b504295.rna_seq.genomic.gdc_realn.bam 7120702019 BAM genomic harmonized CPTAC3 75e0fa0b-2b5a-4e31-a3e8-ffb5174b2a41 2b0e424612199dea6daf0c1dd95cda24 { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor' } -C3L-01033.RNA-Seq.R1_L003.T C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTTTCG_S12_L003_R1_001.fastq.gz 2451910737 FASTQ R1_L003 unaligned CPTAC3 e38b3802-04bf-4acb-a507-5398bd0c38d6 058413bfd5e42c4a39e20abda7b64583 { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor' } -C3L-01033.RNA-Seq.R2_L003.T C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTTTCG_S12_L003_R2_001.fastq.gz 2532703481 FASTQ R2_L003 unaligned CPTAC3 101f387e-adb0-41c3-b47b-697ed9e6c824 1e889409e07ca374018c18197bf13692 { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor' } -C3L-01033.RNA-Seq.transcriptome.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 86a59a0e-9b43-4316-8e0b-4ca40b504295.rna_seq.transcriptome.gdc_realn.bam 4110044088 BAM transcriptome harmonized CPTAC3 ed1d1ef5-dd4c-4284-8ce0-d4148e0a0ba2 8e7cd5a97b5ea9675255e367a5960732 { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor' } +C3L-01033.RNA-Seq.chimeric.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 0b9d3a05-1c4b-48ee-aca0-6b8e34dcc45b.rna_seq.chimeric.gdc_realn.bam 24375190 BAM chimeric harmonized CPTAC3 3887c181-c6ec-47a0-8ebc-bf25d516ad25 67897cd688b144f41a295ffc7ee796d9 { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor' } +C3L-01033.RNA-Seq.genomic.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 0b9d3a05-1c4b-48ee-aca0-6b8e34dcc45b.rna_seq.genomic.gdc_realn.bam 7121413280 BAM genomic harmonized CPTAC3 d404661f-3dbc-4573-8446-474faa57c529 ec326118c4c461ed641cfcddbeb9818f { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor' } +C3L-01033.RNA-Seq.R1_L003.T C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTTTCG_S12_L003_R1_001.fastq.gz 2451910737 FASTQ R1_L003 unaligned CPTAC3 e38b3802-04bf-4acb-a507-5398bd0c38d6 058413bfd5e42c4a39e20abda7b64583 { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01033.RNA-Seq.R2_L003.T C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTTTCG_S12_L003_R2_001.fastq.gz 2532703481 FASTQ R2_L003 unaligned CPTAC3 101f387e-adb0-41c3-b47b-697ed9e6c824 1e889409e07ca374018c18197bf13692 { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01033.RNA-Seq.transcriptome.T.hg38 C3L-01033 CCRCC RNA-Seq tumor CPT0170070009 0b9d3a05-1c4b-48ee-aca0-6b8e34dcc45b.rna_seq.transcriptome.gdc_realn.bam 4536007255 BAM transcriptome harmonized CPTAC3 a457d146-0fc1-48e0-9d07-2b94c8395fe7 4a5f62234ed37183d35d7baa7cce2778 { 'aliquot_tag': 'ALQ_ce852623', 'gdc_sample_type': 'Primary Tumor' } C3L-01033.WGS.A C3L-01033 CCRCC WGS tissue_normal CPT0170080006 CPT0170080006.WholeGenome.RP-1303.bam 53352077053 BAM aligned CPTAC3 9d567de8-7b59-4bde-8905-de41261a16c8 dfbddb130de96bf994c9f07493309a82 { 'aliquot_tag': 'ALQ_dc6aac63', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01033.WGS.A.hg38 C3L-01033 CCRCC WGS tissue_normal CPT0170080006 def2791d-a9ad-4d15-bc61-270a0c65c93d_wgs_gdc_realn.bam 79050022509 BAM harmonized CPTAC3 15b580b3-c8b4-4ec9-9811-6a4b5f86547d 05d6a71a348ed27d1c7b381b464c2bbd { 'aliquot_tag': 'ALQ_dc6aac63', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01033.WGS.N C3L-01033 CCRCC WGS blood_normal CPT0167210002 CPT0167210002.WholeGenome.RP-1303.bam 55979296355 BAM aligned CPTAC3 ae674e66-66f8-41ae-ba48-f8ed10b21000 f7f76364427f4d5e8b8cf5feea20f669 { 'aliquot_tag': 'ALQ_92d29510', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5325,11 +5851,11 @@ C3L-01034.MethArray.Red.A C3L-01034 CCRCC Methylation Array tissue_normal CPT017 C3L-01034.MethArray.Red.T C3L-01034 CCRCC Methylation Array tumor CPT0170150006 203219640102_R04C01_Red.idat 13676220 IDAT Red NA CPTAC3 4d6dd61f-c8c4-44f5-af6a-ac55be663715 b6efd4e976d203f12ae1e840e0c36a89 { 'aliquot_tag': 'ALQ_efa6bb77', 'gdc_sample_type': 'Primary Tumor' } C3L-01034.miRNA-Seq.T C3L-01034 CCRCC miRNA-Seq tumor CPT0170150009 190228_UNC32-K00270_0151_AHYLY3BBXX_TACAGC_S43_L008_R1_001.unaln.bam 202897670 BAM unaligned CPTAC3 2d97c31e-2179-4a86-901d-bd5e86a1f66f 28d461d8ec28b45d4dc7cb25652703e1 { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor' } C3L-01034.miRNA-Seq.T.hg38 C3L-01034 CCRCC miRNA-Seq tumor CPT0170150009 e1781859-e635-43e6-863e-f20117458466_mirnaseq_gdc_realn.bam 222681790 BAM harmonized CPTAC3 791d25a6-6275-4cdc-9eb4-3b59e2d7c43a d246698fce6a12bef529c0984f5b4ae1 { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01034.RNA-Seq.chimeric.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 7e6fc02d-1351-48b0-ac2e-2dfcb40f938e.rna_seq.chimeric.gdc_realn.bam 93709393 BAM chimeric harmonized CPTAC3 c67b03b9-b134-4bd6-9bb5-b17337f1f62d 942e3c5a1ad8bde10cd62e9de257d3ae { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01034.RNA-Seq.genomic.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 7e6fc02d-1351-48b0-ac2e-2dfcb40f938e.rna_seq.genomic.gdc_realn.bam 17659284684 BAM genomic harmonized CPTAC3 4cf13c4d-2a49-446b-9f10-6f647d70a708 92a247dea02bd23fc24bd6bb141bb52e { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01034.RNA-Seq.R1_L005.T C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L005_R1_001.fastq.gz 6080726118 FASTQ R1_L005 unaligned CPTAC3 8c012fbf-51f4-47cc-b6f5-a7b3a12f036d 062c207b63e32d77c4bee167e3d7db8c { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01034.RNA-Seq.R2_L005.T C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L005_R2_001.fastq.gz 6700154478 FASTQ R2_L005 unaligned CPTAC3 3f9aa847-0e4b-4f04-98b6-c9ae16cc5353 a669bb7aa43354029eb425ac985980f0 { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01034.RNA-Seq.transcriptome.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 7e6fc02d-1351-48b0-ac2e-2dfcb40f938e.rna_seq.transcriptome.gdc_realn.bam 13197000900 BAM transcriptome harmonized CPTAC3 4f5bdd4b-701d-4020-b0c9-6188a1218350 125217afffc68f95c87dbed96bc8c4f7 { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor' } +C3L-01034.RNA-Seq.chimeric.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 3807463a-8d75-49ae-b89e-d5b25d6bbc24.rna_seq.chimeric.gdc_realn.bam 93685922 BAM chimeric harmonized CPTAC3 a75d144b-8203-40c4-8fee-fa9fe3042978 0e71ff0756a6bc106bf470caebeb66ad { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor' } +C3L-01034.RNA-Seq.genomic.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 3807463a-8d75-49ae-b89e-d5b25d6bbc24.rna_seq.genomic.gdc_realn.bam 17660128092 BAM genomic harmonized CPTAC3 325a7a28-0498-4d38-8c5e-563eab23727d 05b117fbd53bd917d63b5802c02e578a { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor' } +C3L-01034.RNA-Seq.R1_L005.T C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L005_R1_001.fastq.gz 6080726118 FASTQ R1_L005 unaligned CPTAC3 8c012fbf-51f4-47cc-b6f5-a7b3a12f036d 062c207b63e32d77c4bee167e3d7db8c { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01034.RNA-Seq.R2_L005.T C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L005_R2_001.fastq.gz 6700154478 FASTQ R2_L005 unaligned CPTAC3 3f9aa847-0e4b-4f04-98b6-c9ae16cc5353 a669bb7aa43354029eb425ac985980f0 { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01034.RNA-Seq.transcriptome.T.hg38 C3L-01034 CCRCC RNA-Seq tumor CPT0170150009 3807463a-8d75-49ae-b89e-d5b25d6bbc24.rna_seq.transcriptome.gdc_realn.bam 14175252882 BAM transcriptome harmonized CPTAC3 1bbd4d91-5bbd-406a-8d7a-b739a6964b64 de99ccf852bb192529df8df0415ecba0 { 'aliquot_tag': 'ALQ_7f19a6e6', 'gdc_sample_type': 'Primary Tumor' } C3L-01034.WGS.A C3L-01034 CCRCC WGS tissue_normal CPT0170170006 CPT0170170006.WholeGenome.RP-1303.bam 57533202244 BAM aligned CPTAC3 72bd9590-888e-495a-bfc3-da45925fa3c9 7f3eb13f749c0bca659f2fd425efad2f { 'aliquot_tag': 'ALQ_9566e817', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01034.WGS.A.hg38 C3L-01034 CCRCC WGS tissue_normal CPT0170170006 9705577c-f81b-4343-aee5-5569cc25fa7b_wgs_gdc_realn.bam 83907377011 BAM harmonized CPTAC3 e553eb5a-0c45-4152-9d79-106a0a1ad9d3 ead8d7ebadf629defb58473dab7c30e5 { 'aliquot_tag': 'ALQ_9566e817', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01034.WGS.N C3L-01034 CCRCC WGS blood_normal CPT0167220002 CPT0167220002.WholeGenome.RP-1303.bam 52770253632 BAM aligned CPTAC3 9d3e244b-fe48-4903-93a9-b553c18f0779 fb6d84756754cb77322b9544d517bb3c { 'aliquot_tag': 'ALQ_d572efc0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5350,8 +5876,8 @@ C3L-01036.miRNA-Seq.T C3L-01036 PDA miRNA-Seq tumor CPT0123440009 181119_UNC31-K C3L-01036.miRNA-Seq.T.hg38 C3L-01036 PDA miRNA-Seq tumor CPT0123440009 61c7f248-2692-4cef-82c8-bdbeaf1b2c98_mirnaseq_gdc_realn.bam 241469725 BAM harmonized CPTAC3 1e2e2400-a414-438a-abba-2694928fe06e c0a2093e0883f82d8cf190f42d3863a4 { 'aliquot_tag': 'ALQ_6bbc0a1c', 'gdc_sample_type': 'Primary Tumor' } C3L-01036.RNA-Seq.chimeric.T.hg38 C3L-01036 PDA RNA-Seq tumor CPT0123440009 c5354146-13df-4ca6-a266-e985fdf2f192.rna_seq.chimeric.gdc_realn.bam 30434923 BAM chimeric harmonized CPTAC3 f4991f5d-168e-4233-a226-a5236a0b686e 0ffbc5294de8b5871ab4f2ada3b08eba { 'aliquot_tag': 'ALQ_6bbc0a1c', 'gdc_sample_type': 'Primary Tumor' } C3L-01036.RNA-Seq.genomic.T.hg38 C3L-01036 PDA RNA-Seq tumor CPT0123440009 c5354146-13df-4ca6-a266-e985fdf2f192.rna_seq.genomic.gdc_realn.bam 11521885212 BAM genomic harmonized CPTAC3 23342272-c1a8-42bb-87ea-dff20adb5831 cfa9beecd45f3d189926a17e0b490ec3 { 'aliquot_tag': 'ALQ_6bbc0a1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01036.RNA-Seq.R1_L004.T C3L-01036 PDA RNA-Seq tumor CPT0123440009 180516_UNC31-K00269_0130_BHV22JBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 4073317106 FASTQ R1_L004 unaligned CPTAC3 d03e3533-6c67-48c2-a635-ec324bc96beb 885acb514a9e33553efa34223e5020e3 { 'aliquot_tag': 'ALQ_6bbc0a1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01036.RNA-Seq.R2_L004.T C3L-01036 PDA RNA-Seq tumor CPT0123440009 180516_UNC31-K00269_0130_BHV22JBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4452262134 FASTQ R2_L004 unaligned CPTAC3 a78acbaf-7957-4de1-a5e0-a1bd7aad774e 200a651297b1365cfce41f111c63eebb { 'aliquot_tag': 'ALQ_6bbc0a1c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01036.RNA-Seq.R1_L004.T C3L-01036 PDA RNA-Seq tumor CPT0123440009 180516_UNC31-K00269_0130_BHV22JBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 4073317106 FASTQ R1_L004 unaligned CPTAC3 d03e3533-6c67-48c2-a635-ec324bc96beb 885acb514a9e33553efa34223e5020e3 { 'aliquot_tag': 'ALQ_6bbc0a1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01036.RNA-Seq.R2_L004.T C3L-01036 PDA RNA-Seq tumor CPT0123440009 180516_UNC31-K00269_0130_BHV22JBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4452262134 FASTQ R2_L004 unaligned CPTAC3 a78acbaf-7957-4de1-a5e0-a1bd7aad774e 200a651297b1365cfce41f111c63eebb { 'aliquot_tag': 'ALQ_6bbc0a1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01036.RNA-Seq.transcriptome.T.hg38 C3L-01036 PDA RNA-Seq tumor CPT0123440009 c5354146-13df-4ca6-a266-e985fdf2f192.rna_seq.transcriptome.gdc_realn.bam 8524552389 BAM transcriptome harmonized CPTAC3 58e7db4c-d018-48b2-83f3-3b83b33f4363 e9783eed330d9cc58d8e480e1cb3500e { 'aliquot_tag': 'ALQ_6bbc0a1c', 'gdc_sample_type': 'Primary Tumor' } C3L-01036.WGS.A C3L-01036 PDA WGS tissue_normal CPT0123460006 CPT0123460006.WholeGenome.RP-1303.bam 54847673805 BAM aligned CPTAC3 9b726a7c-f420-4dbd-881e-38004d05a608 4f77a7a290dd3a478e0bb200af80944d { 'aliquot_tag': 'ALQ_81c344ed', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01036.WGS.A.hg38 C3L-01036 PDA WGS tissue_normal CPT0123460006 601671fe-f66b-46bc-b927-b10d29a4fa86_wgs_gdc_realn.bam 79993139965 BAM harmonized CPTAC3 85559fe7-569f-41bf-a1b3-cb6b4b073cff 3288901116a1ee779f60b52ce4b3c129 { 'aliquot_tag': 'ALQ_81c344ed', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -5375,8 +5901,8 @@ C3L-01037.miRNA-Seq.T C3L-01037 PDA miRNA-Seq tumor CPT0170240010 190712_UNC32-K C3L-01037.miRNA-Seq.T.hg38 C3L-01037 PDA miRNA-Seq tumor CPT0170240010 94cf66d7-3b58-430d-a806-a583536c2c03_mirnaseq_gdc_realn.bam 202211778 BAM harmonized CPTAC3 97d6d853-4ca0-496e-819c-c3a632002b70 d588326158afc00a9d44654ce4ef962a { 'aliquot_tag': 'ALQ_a42a741d', 'gdc_sample_type': 'Primary Tumor' } C3L-01037.RNA-Seq.chimeric.T.hg38 C3L-01037 PDA RNA-Seq tumor CPT0170240010 5d62f4eb-867f-4d87-af2d-95e4bf998cf7.rna_seq.chimeric.gdc_realn.bam 49166409 BAM chimeric harmonized CPTAC3 22f733b1-2436-485b-b2c8-42a14f5c34b6 2d36f48f59314739f8cd61339b2473a8 { 'aliquot_tag': 'ALQ_a42a741d', 'gdc_sample_type': 'Primary Tumor' } C3L-01037.RNA-Seq.genomic.T.hg38 C3L-01037 PDA RNA-Seq tumor CPT0170240010 5d62f4eb-867f-4d87-af2d-95e4bf998cf7.rna_seq.genomic.gdc_realn.bam 11191249005 BAM genomic harmonized CPTAC3 6c8ad372-41d8-486e-aa4b-8213f8a483e8 cc9bc2f463ad9fa06ba9385e080aba9b { 'aliquot_tag': 'ALQ_a42a741d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01037.RNA-Seq.R1_L004.T C3L-01037 PDA RNA-Seq tumor CPT0170240010 190614_UNC32-K00270_0182_BH7777BBXY_TAAGTGGT-CTTAAGCC_S16_L004_R1_001.fastq.gz 4300142452 FASTQ R1_L004 unaligned CPTAC3 0b07e406-3fb4-48ad-82cf-b98ced8f6506 c597076e4dd2080b4db4df0e391e5ba3 { 'aliquot_tag': 'ALQ_a42a741d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01037.RNA-Seq.R2_L004.T C3L-01037 PDA RNA-Seq tumor CPT0170240010 190614_UNC32-K00270_0182_BH7777BBXY_TAAGTGGT-CTTAAGCC_S16_L004_R2_001.fastq.gz 4860566795 FASTQ R2_L004 unaligned CPTAC3 5f1ee857-f891-4c24-b22a-6af08f1adf46 ac462e3786d8f531275f39ee4b3f5fd6 { 'aliquot_tag': 'ALQ_a42a741d', 'gdc_sample_type': 'Primary Tumor' } +C3L-01037.RNA-Seq.R1_L004.T C3L-01037 PDA RNA-Seq tumor CPT0170240010 190614_UNC32-K00270_0182_BH7777BBXY_TAAGTGGT-CTTAAGCC_S16_L004_R1_001.fastq.gz 4300142452 FASTQ R1_L004 unaligned CPTAC3 0b07e406-3fb4-48ad-82cf-b98ced8f6506 c597076e4dd2080b4db4df0e391e5ba3 { 'aliquot_tag': 'ALQ_a42a741d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01037.RNA-Seq.R2_L004.T C3L-01037 PDA RNA-Seq tumor CPT0170240010 190614_UNC32-K00270_0182_BH7777BBXY_TAAGTGGT-CTTAAGCC_S16_L004_R2_001.fastq.gz 4860566795 FASTQ R2_L004 unaligned CPTAC3 5f1ee857-f891-4c24-b22a-6af08f1adf46 ac462e3786d8f531275f39ee4b3f5fd6 { 'aliquot_tag': 'ALQ_a42a741d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01037.RNA-Seq.transcriptome.T.hg38 C3L-01037 PDA RNA-Seq tumor CPT0170240010 5d62f4eb-867f-4d87-af2d-95e4bf998cf7.rna_seq.transcriptome.gdc_realn.bam 11873752722 BAM transcriptome harmonized CPTAC3 ee6306cd-93ee-42dc-a39c-4a5d0476836b 49e4feeef1755c8e5a2a20d60415a74d { 'aliquot_tag': 'ALQ_a42a741d', 'gdc_sample_type': 'Primary Tumor' } C3L-01037.Targeted.T C3L-01037 PDA Targeted Sequencing tumor CPT0170240007 CPT0170240007.CustomSelection.RP-1303.PDO-18786.bam 4768677801 BAM aligned CPTAC3 7774f8e0-2d87-4602-acb8-7629b8f9d35f 0e741d0f6427a5e2965015fbe5c6d9d5 { 'aliquot_tag': 'ALQ_2355d0ff', 'gdc_sample_type': 'Primary Tumor' } C3L-01037.Targeted.T.hg38 C3L-01037 PDA Targeted Sequencing tumor CPT0170240007 b75965f9-6de3-4257-9f86-ff21ca24c9f1_targetedsequencing_gdc_realn.bam 6557863924 BAM harmonized CPTAC3 eeb23c1d-2d13-4da0-a3d3-4452350f66dd 6f6c0e2569b19cf5e50a2133b5799c8c { 'aliquot_tag': 'ALQ_2355d0ff', 'gdc_sample_type': 'Primary Tumor' } @@ -5390,35 +5916,47 @@ C3L-01037.WXS.N C3L-01037 PDA WXS blood_normal CPT0167230002 CPT0167230002.Whole C3L-01037.WXS.N.hg38 C3L-01037 PDA WXS blood_normal CPT0167230002 52ceffda-2a7b-4682-a7fe-3adfa2a3c703_wxs_gdc_realn.bam 38308740048 BAM harmonized CPTAC3 d226760d-70d7-48be-a71f-14e4d5b6b65d 02008cfb97a45624a013a7f108af84bd { 'aliquot_tag': 'ALQ_e812c670', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01037.WXS.T C3L-01037 PDA WXS tumor CPT0170240007 CPT0170240007.WholeExome.RP-1303.bam 46916744201 BAM aligned CPTAC3 887b4768-2410-4457-9d7d-a5c5ea3348f1 d56f5ab857cc0437a879896439b68b45 { 'aliquot_tag': 'ALQ_2355d0ff', 'gdc_sample_type': 'Primary Tumor' } C3L-01037.WXS.T.hg38 C3L-01037 PDA WXS tumor CPT0170240007 b75965f9-6de3-4257-9f86-ff21ca24c9f1_wxs_gdc_realn.bam 64811583822 BAM harmonized CPTAC3 e9428ff1-b9b0-4d71-bac4-ad733aa7dab8 63f5435ff5f94ccd72454e2816c46b07 { 'aliquot_tag': 'ALQ_2355d0ff', 'gdc_sample_type': 'Primary Tumor' } -C3L-01039.ANN_2a47f5ac.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 b89a1f41-a9b7-4126-bd35-de7866156603.rna_seq.chimeric.gdc_realn.bam 207289167 BAM chimeric harmonized CPTAC3 847419de-88be-41b6-8471-750fec749537 be08dca09f4da398e5055fbebb74a640 { 'aliquot_tag': 'ANN_2a47f5ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-01039.ANN_2a47f5ac.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 b89a1f41-a9b7-4126-bd35-de7866156603.rna_seq.genomic.gdc_realn.bam 9396708284 BAM genomic harmonized CPTAC3 f93f723e-4b61-4498-a8d7-22c46f370613 609d44dcd2c7f2f2b9650d566b2dd879 { 'aliquot_tag': 'ANN_2a47f5ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-01039.ANN_2a47f5ac.RNA-Seq.R1_L006.T C3L-01039 PDA RNA-Seq tumor CPT0170340031 200807_UNC32-K00270_0255_AHHY2WBBXY_TGGCCGGT-TAGAGCGC_S7_L006_R1_001.fastq.gz 3261916364 FASTQ R1_L006 unaligned CPTAC3 42a2998d-a333-4029-a3bb-140902ba6638 90fa6a68d5808cfb203a1c6e33c3b649 { 'aliquot_tag': 'ANN_2a47f5ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-01039.ANN_2a47f5ac.RNA-Seq.R2_L006.T C3L-01039 PDA RNA-Seq tumor CPT0170340031 200807_UNC32-K00270_0255_AHHY2WBBXY_TGGCCGGT-TAGAGCGC_S7_L006_R2_001.fastq.gz 3658194729 FASTQ R2_L006 unaligned CPTAC3 98741507-9f87-456c-8803-a2e4472b65e0 fc3204195784878fa93c30866a2d96f5 { 'aliquot_tag': 'ANN_2a47f5ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-01039.ANN_2a47f5ac.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 b89a1f41-a9b7-4126-bd35-de7866156603.rna_seq.transcriptome.gdc_realn.bam 6135509850 BAM transcriptome harmonized CPTAC3 08cab5d1-6409-4279-9650-951af51b0f4f 62c1386ad2f4db6cf93888543d5d11d3 { 'aliquot_tag': 'ANN_2a47f5ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-01039.ANN_2a47f5ac.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 f4d82734-17f3-4e86-9eab-99acc9d8416c.rna_seq.chimeric.gdc_realn.bam 207291912 BAM chimeric harmonized CPTAC3 4474ef2f-184c-49c7-8b95-bd2587088d58 e228644556ff943741cd930c1014a3ff { 'aliquot_tag': 'ANN_2a47f5ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-01039.ANN_2a47f5ac.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 f4d82734-17f3-4e86-9eab-99acc9d8416c.rna_seq.genomic.gdc_realn.bam 9416347355 BAM genomic harmonized CPTAC3 e5cc20a7-c3d3-42fa-bab2-844ac2c53983 ad2b61322fb7c05e9ad0820179f0c871 { 'aliquot_tag': 'ANN_2a47f5ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-01039.ANN_2a47f5ac.RNA-Seq.R1_L006.T C3L-01039 PDA RNA-Seq tumor CPT0170340031 200807_UNC32-K00270_0255_AHHY2WBBXY_TGGCCGGT-TAGAGCGC_S7_L006_R1_001.fastq.gz 3261916364 FASTQ R1_L006 unaligned CPTAC3 42a2998d-a333-4029-a3bb-140902ba6638 90fa6a68d5808cfb203a1c6e33c3b649 { 'aliquot_tag': 'ANN_2a47f5ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L006' } +C3L-01039.ANN_2a47f5ac.RNA-Seq.R2_L006.T C3L-01039 PDA RNA-Seq tumor CPT0170340031 200807_UNC32-K00270_0255_AHHY2WBBXY_TGGCCGGT-TAGAGCGC_S7_L006_R2_001.fastq.gz 3658194729 FASTQ R2_L006 unaligned CPTAC3 98741507-9f87-456c-8803-a2e4472b65e0 fc3204195784878fa93c30866a2d96f5 { 'aliquot_tag': 'ANN_2a47f5ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L006' } +C3L-01039.ANN_2a47f5ac.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340031 f4d82734-17f3-4e86-9eab-99acc9d8416c.rna_seq.transcriptome.gdc_realn.bam 6871342205 BAM transcriptome harmonized CPTAC3 488d1935-f3a2-4789-adad-1ac5819b78d1 1fffba7ac010a65280948dd072953d62 { 'aliquot_tag': 'ANN_2a47f5ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } C3L-01039.DUP_2d2a31b5.WXS.T C3L-01039 PDA WXS tumor CPT0170340035 CPT0170340035.WholeExome.RP-1303.bam 30516946825 BAM aligned CPTAC3 df6d849d-4e3b-4746-8958-9df41e86a551 11f1206021a88e2c2ea5581ac904a541 { 'aliquot_tag': 'DUP_2d2a31b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-01039.DUP_2d2a31b5.WXS.T.hg38 C3L-01039 PDA WXS tumor CPT0170340035 a13a2bb2-ee5e-4079-8ac8-0f24b1a6c0be_wxs_gdc_realn.bam 41850552115 BAM harmonized CPTAC3 8a834e96-c126-45c4-91d1-a55ac01ecf42 4e8691b47d1d74a3547d1af8232d1249 { 'aliquot_tag': 'DUP_2d2a31b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3L-01039.DUP_2f617a4d.RNA-Seq.chimeric.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 37791378-64e1-4140-88aa-6a9064164f9e.rna_seq.chimeric.gdc_realn.bam 124272541 BAM chimeric harmonized CPTAC3 7adb0387-2d40-4670-93e2-37f733ba2b67 1d15063cbfde0c254bc3b07ee2e57b0d { 'aliquot_tag': 'DUP_2f617a4d', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-01039.DUP_2f617a4d.RNA-Seq.genomic.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 37791378-64e1-4140-88aa-6a9064164f9e.rna_seq.genomic.gdc_realn.bam 12433296896 BAM genomic harmonized CPTAC3 4815809e-bd63-4ff7-8704-df0e7ea3df67 7b25ef134499540c9193b02b6a760182 { 'aliquot_tag': 'DUP_2f617a4d', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-01039.DUP_2f617a4d.RNA-Seq.R1_L001.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 220126_UNC32-K00270_0314_AHMVJ7BBXY_CAAGCTAG-ACATAGCG_S2_L001_R1_001.fastq.gz 3972095998 FASTQ R1_L001 unaligned CPTAC3 948663db-655e-404c-bad1-9f173b3f66fb 3691eef2d97f9f8f9a0d0b16a029ef2a { 'aliquot_tag': 'DUP_2f617a4d', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L001' } +C3L-01039.DUP_2f617a4d.RNA-Seq.R2_L001.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 220126_UNC32-K00270_0314_AHMVJ7BBXY_CAAGCTAG-ACATAGCG_S2_L001_R2_001.fastq.gz 4594486433 FASTQ R2_L001 unaligned CPTAC3 e598b3c9-60b8-4676-88f4-cdb8890d0b65 1ac00656d1158ec823cb2b736a56f9f6 { 'aliquot_tag': 'DUP_2f617a4d', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L001' } +C3L-01039.DUP_2f617a4d.RNA-Seq.transcriptome.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 37791378-64e1-4140-88aa-6a9064164f9e.rna_seq.transcriptome.gdc_realn.bam 8799967350 BAM transcriptome harmonized CPTAC3 20d8c8a6-735a-4384-a9ff-bdd5ff8ff7ed 14ededcb44b853977124c71adbda76d2 { 'aliquot_tag': 'DUP_2f617a4d', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3L-01039.DUP_5a2d0123.WXS.T C3L-01039 PDA WXS tumor CPT0170340034 CPT0170340034.WholeExome.RP-1303.bam 27497673579 BAM aligned CPTAC3 a4a6fa41-09d6-4dcd-ba05-d45ee6b0c47f 1fcb486b82b41731a998485462d766cf { 'aliquot_tag': 'DUP_5a2d0123', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-01039.DUP_5a2d0123.WXS.T.hg38 C3L-01039 PDA WXS tumor CPT0170340034 eaffb165-64c1-40c2-a368-9a6791c8a11d_wxs_gdc_realn.bam 37717698204 BAM harmonized CPTAC3 d1bc5688-1af4-49ca-9b19-cad9a7cdc45c c33f4057fa14ddfd1dcbe506913279c6 { 'aliquot_tag': 'DUP_5a2d0123', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-01039.DUP_5a321a60.WXS.N C3L-01039 PDA WXS blood_normal CPT0167240002 CPT0167240002.WholeExome.RP-1303.bam 26241879069 BAM aligned CPTAC3 3fb2c2c7-ea70-408c-aacb-964a08477bf5 d5087319fab0561f73f6436e1b464a68 { 'aliquot_tag': 'DUP_5a321a60', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-01039.DUP_5a321a60.WXS.N.hg38 C3L-01039 PDA WXS blood_normal CPT0167240002 e1e83029-f44d-49b3-9c90-9b7b42934974_wxs_gdc_realn.bam 36998045601 BAM harmonized CPTAC3 3d9d35d6-5d4c-4585-bdd9-7fd46867519f 86baa17e36813663f7245cb4dc9abad9 { 'aliquot_tag': 'DUP_5a321a60', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3L-01039.DUP_626ba772.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340045 18eddaa5-3cc5-4209-939b-8d3e2cf40430.rna_seq.chimeric.gdc_realn.bam 499986198 BAM chimeric harmonized CPTAC3 ec6fcf79-fa9b-4c3f-9c19-3bc0066468c3 d7038b7a2d72c8b09e394aed5c140297 { 'aliquot_tag': 'DUP_626ba772', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-01039.DUP_626ba772.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340045 18eddaa5-3cc5-4209-939b-8d3e2cf40430.rna_seq.genomic.gdc_realn.bam 11620625604 BAM genomic harmonized CPTAC3 8fe59329-7913-4b64-a043-babfb59db171 6df43e6791cca593130944ee10b3bf62 { 'aliquot_tag': 'DUP_626ba772', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-01039.DUP_626ba772.RNA-Seq.R1_L008.T C3L-01039 PDA RNA-Seq tumor CPT0170340045 220114_UNC32-K00270_0310_AHMWT5BBXY_CTTGGTAT-CCAAGTCC_S26_L008_R1_001.fastq.gz 4555787969 FASTQ R1_L008 unaligned CPTAC3 5d248abd-d856-44e6-a1ef-9f1ef862b4c3 d572667b4b546670fe6f373138b0df39 { 'aliquot_tag': 'DUP_626ba772', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L008' } +C3L-01039.DUP_626ba772.RNA-Seq.R2_L008.T C3L-01039 PDA RNA-Seq tumor CPT0170340045 220114_UNC32-K00270_0310_AHMWT5BBXY_CTTGGTAT-CCAAGTCC_S26_L008_R2_001.fastq.gz 5082040632 FASTQ R2_L008 unaligned CPTAC3 388511d0-bfc8-402d-9559-93dbd45bbbf9 2bbc0f604abf2ce26fcb5e654d3a8d54 { 'aliquot_tag': 'DUP_626ba772', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L008' } +C3L-01039.DUP_626ba772.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340045 18eddaa5-3cc5-4209-939b-8d3e2cf40430.rna_seq.transcriptome.gdc_realn.bam 12516431251 BAM transcriptome harmonized CPTAC3 2cea3948-55f8-445d-aa45-7a95fdc4dd3d 80353a011c1c05441470d70d115dbc15 { 'aliquot_tag': 'DUP_626ba772', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3L-01039.DUP_b423600f.WXS.T C3L-01039 PDA WXS tumor CPT0170340036 CPT0170340036.WholeExome.RP-1303.bam 22556838103 BAM aligned CPTAC3 2d3cd8f9-8839-4079-b317-662471472b13 b4872754d55a0c09b1cc10fb8766aaa2 { 'aliquot_tag': 'DUP_b423600f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-01039.DUP_b423600f.WXS.T.hg38 C3L-01039 PDA WXS tumor CPT0170340036 7c37f754-0d9c-4a21-a84c-38978e8f57a4_wxs_gdc_realn.bam 30465875706 BAM harmonized CPTAC3 cb8ecc77-fd9d-439b-b0ab-ae2a0450768d 3b835c0dc3c6fdcd74dd9beadcf6cfa9 { 'aliquot_tag': 'DUP_b423600f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3L-01039.RNA-Seq.R1_L001.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 220126_UNC32-K00270_0314_AHMVJ7BBXY_CAAGCTAG-ACATAGCG_S2_L001_R1_001.fastq.gz 3972095998 FASTQ R1_L001 unaligned CPTAC3 948663db-655e-404c-bad1-9f173b3f66fb 3691eef2d97f9f8f9a0d0b16a029ef2a { 'aliquot_tag': 'ALQ_2f617a4d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01039.RNA-Seq.R1_L001.T C3L-01039 PDA RNA-Seq tumor CPT0170340042 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCTTGTCA-GAACATAC_S3_L001_R1_001.fastq.gz 3699419632 FASTQ R1_L001 unaligned CPTAC3 4c40895f-fc34-4160-836f-3aac7e1442ce 40d10a04e15ca2783b63f5389eadc04a { 'aliquot_tag': 'ALQ_fc0f32d1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01039.RNA-Seq.R1_L008.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 220114_UNC32-K00270_0310_AHMWT5BBXY_TCCAACGC-TTGGACTT_S28_L008_R1_001.fastq.gz 4342609058 FASTQ R1_L008 unaligned CPTAC3 92607562-3a29-4eed-8216-6a50a98744d8 8e04e79ba528fa0c3abe55850d35ab7b { 'aliquot_tag': 'ALQ_b6682bf7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01039.RNA-Seq.R1_L008.T C3L-01039 PDA RNA-Seq tumor CPT0170340045 220114_UNC32-K00270_0310_AHMWT5BBXY_CTTGGTAT-CCAAGTCC_S26_L008_R1_001.fastq.gz 4555787969 FASTQ R1_L008 unaligned CPTAC3 5d248abd-d856-44e6-a1ef-9f1ef862b4c3 d572667b4b546670fe6f373138b0df39 { 'aliquot_tag': 'ALQ_626ba772', 'gdc_sample_type': 'Primary Tumor' } -C3L-01039.RNA-Seq.R2_L001.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350040 220126_UNC32-K00270_0314_AHMVJ7BBXY_CAAGCTAG-ACATAGCG_S2_L001_R2_001.fastq.gz 4594486433 FASTQ R2_L001 unaligned CPTAC3 e598b3c9-60b8-4676-88f4-cdb8890d0b65 1ac00656d1158ec823cb2b736a56f9f6 { 'aliquot_tag': 'ALQ_2f617a4d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01039.RNA-Seq.R2_L001.T C3L-01039 PDA RNA-Seq tumor CPT0170340042 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCTTGTCA-GAACATAC_S3_L001_R2_001.fastq.gz 4183122327 FASTQ R2_L001 unaligned CPTAC3 2d98122a-4dd8-47f4-b5e1-56599339abb5 fe4c422b6b78796ec272a0080ec13505 { 'aliquot_tag': 'ALQ_fc0f32d1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01039.RNA-Seq.R2_L008.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 220114_UNC32-K00270_0310_AHMWT5BBXY_TCCAACGC-TTGGACTT_S28_L008_R2_001.fastq.gz 5183019633 FASTQ R2_L008 unaligned CPTAC3 6f553b66-19ae-4806-9119-d1754ea0631e 749286eec5118d2b9ec33f1e6dd1575d { 'aliquot_tag': 'ALQ_b6682bf7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01039.RNA-Seq.R2_L008.T C3L-01039 PDA RNA-Seq tumor CPT0170340045 220114_UNC32-K00270_0310_AHMWT5BBXY_CTTGGTAT-CCAAGTCC_S26_L008_R2_001.fastq.gz 5082040632 FASTQ R2_L008 unaligned CPTAC3 388511d0-bfc8-402d-9559-93dbd45bbbf9 2bbc0f604abf2ce26fcb5e654d3a8d54 { 'aliquot_tag': 'ALQ_626ba772', 'gdc_sample_type': 'Primary Tumor' } +C3L-01039.DUP_b6682bf7.RNA-Seq.chimeric.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 1968920e-7a85-404c-87c8-d313f2165440.rna_seq.chimeric.gdc_realn.bam 42451664 BAM chimeric harmonized CPTAC3 55988630-c1da-4993-bcea-f420fe12da24 0d7d096050ee7b514bf9dc8a65a92cae { 'aliquot_tag': 'DUP_b6682bf7', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-01039.DUP_b6682bf7.RNA-Seq.genomic.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 1968920e-7a85-404c-87c8-d313f2165440.rna_seq.genomic.gdc_realn.bam 21240819041 BAM genomic harmonized CPTAC3 7db42090-b0b4-4f50-bfc7-f779c5e651ec 8119707e4848d312610cb19ca77cbbd0 { 'aliquot_tag': 'DUP_b6682bf7', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-01039.DUP_b6682bf7.RNA-Seq.R1_L008.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 220114_UNC32-K00270_0310_AHMWT5BBXY_TCCAACGC-TTGGACTT_S28_L008_R1_001.fastq.gz 4342609058 FASTQ R1_L008 unaligned CPTAC3 92607562-3a29-4eed-8216-6a50a98744d8 8e04e79ba528fa0c3abe55850d35ab7b { 'aliquot_tag': 'DUP_b6682bf7', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L008' } +C3L-01039.DUP_b6682bf7.RNA-Seq.R2_L008.A C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 220114_UNC32-K00270_0310_AHMWT5BBXY_TCCAACGC-TTGGACTT_S28_L008_R2_001.fastq.gz 5183019633 FASTQ R2_L008 unaligned CPTAC3 6f553b66-19ae-4806-9119-d1754ea0631e 749286eec5118d2b9ec33f1e6dd1575d { 'aliquot_tag': 'DUP_b6682bf7', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L008' } +C3L-01039.DUP_b6682bf7.RNA-Seq.transcriptome.A.hg38 C3L-01039 PDA RNA-Seq tissue_normal CPT0170350043 1968920e-7a85-404c-87c8-d313f2165440.rna_seq.transcriptome.gdc_realn.bam 11772859789 BAM transcriptome harmonized CPTAC3 e6b85898-0b14-47fb-83a6-bb06cbd453fe c7283b111797dffe064c0c3ef8ef1e75 { 'aliquot_tag': 'DUP_b6682bf7', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-01039.DUP_fc0f32d1.RNA-Seq.chimeric.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340042 5ae2250b-2468-4e09-9b7c-1dbf2fa278d5.rna_seq.chimeric.gdc_realn.bam 249298102 BAM chimeric harmonized CPTAC3 5e604064-378e-4c48-a083-be60e05f56cf ad95f8c3f2c87aa7c81d206b7756bd86 { 'aliquot_tag': 'DUP_fc0f32d1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-01039.DUP_fc0f32d1.RNA-Seq.genomic.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340042 5ae2250b-2468-4e09-9b7c-1dbf2fa278d5.rna_seq.genomic.gdc_realn.bam 9440433214 BAM genomic harmonized CPTAC3 5bd7420d-f3ec-44c0-9b31-e32b25cce299 56bec64de3c825b6b539a051215df87e { 'aliquot_tag': 'DUP_fc0f32d1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-01039.DUP_fc0f32d1.RNA-Seq.R1_L001.T C3L-01039 PDA RNA-Seq tumor CPT0170340042 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCTTGTCA-GAACATAC_S3_L001_R1_001.fastq.gz 3699419632 FASTQ R1_L001 unaligned CPTAC3 4c40895f-fc34-4160-836f-3aac7e1442ce 40d10a04e15ca2783b63f5389eadc04a { 'aliquot_tag': 'DUP_fc0f32d1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L001' } +C3L-01039.DUP_fc0f32d1.RNA-Seq.R2_L001.T C3L-01039 PDA RNA-Seq tumor CPT0170340042 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCTTGTCA-GAACATAC_S3_L001_R2_001.fastq.gz 4183122327 FASTQ R2_L001 unaligned CPTAC3 2d98122a-4dd8-47f4-b5e1-56599339abb5 fe4c422b6b78796ec272a0080ec13505 { 'aliquot_tag': 'DUP_fc0f32d1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L001' } +C3L-01039.DUP_fc0f32d1.RNA-Seq.transcriptome.T.hg38 C3L-01039 PDA RNA-Seq tumor CPT0170340042 5ae2250b-2468-4e09-9b7c-1dbf2fa278d5.rna_seq.transcriptome.gdc_realn.bam 9029569895 BAM transcriptome harmonized CPTAC3 687f0583-b55d-49dd-a916-5b7ff04e6563 dec58bc1def552a275f433bcdaa4d5fb { 'aliquot_tag': 'DUP_fc0f32d1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3L-01040.MethArray.Green.T C3L-01040 GBM Methylation Array tumor CPT0171580011 203027390028_R06C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7561727f-2db5-4d54-9e80-3dbec1e10bd6 38257262072b97dc7e7eae8db1206955 { 'aliquot_tag': 'ALQ_adaf9286', 'gdc_sample_type': 'Primary Tumor' } C3L-01040.MethArray.Red.T C3L-01040 GBM Methylation Array tumor CPT0171580011 203027390028_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 ff017231-75df-49ff-a006-59a6d68b665d b6e358cfd565bc881e7c3e9f03e38ad9 { 'aliquot_tag': 'ALQ_adaf9286', 'gdc_sample_type': 'Primary Tumor' } C3L-01040.miRNA-Seq.T C3L-01040 GBM miRNA-Seq tumor CPT0171580014 181119_UNC31-K00269_0165_AH27WCBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 276089687 BAM unaligned CPTAC3 81cef73b-464c-4fda-ba9f-d4300b045a3b 1014fa18be9388a12bcdc0f8b8503cd1 { 'aliquot_tag': 'ALQ_ddc56609', 'gdc_sample_type': 'Primary Tumor' } C3L-01040.miRNA-Seq.T.hg38 C3L-01040 GBM miRNA-Seq tumor CPT0171580014 9b5c6c8d-687c-4ffb-b2a7-acd3bddafab5_mirnaseq_gdc_realn.bam 311212639 BAM harmonized CPTAC3 b4fc18c5-8c94-413a-bb7a-1033dbbe55b6 cae01bccea351997e5f29efb0193fc42 { 'aliquot_tag': 'ALQ_ddc56609', 'gdc_sample_type': 'Primary Tumor' } C3L-01040.RNA-Seq.chimeric.T.hg38 C3L-01040 GBM RNA-Seq tumor CPT0171580014 31ea1196-cc47-497c-b003-d97e27bd7db6.rna_seq.chimeric.gdc_realn.bam 30312050 BAM chimeric harmonized CPTAC3 c286d70d-80ab-4011-b72b-1ca10ac0595b ffd18856d82ed2cab83a3ed6512ea1cd { 'aliquot_tag': 'ALQ_ddc56609', 'gdc_sample_type': 'Primary Tumor' } C3L-01040.RNA-Seq.genomic.T.hg38 C3L-01040 GBM RNA-Seq tumor CPT0171580014 31ea1196-cc47-497c-b003-d97e27bd7db6.rna_seq.genomic.gdc_realn.bam 7289994249 BAM genomic harmonized CPTAC3 1a437fda-91bc-4bcb-8896-37243fe041c3 8b366375b0402434360cf06e53876512 { 'aliquot_tag': 'ALQ_ddc56609', 'gdc_sample_type': 'Primary Tumor' } -C3L-01040.RNA-Seq.R1_L007.T C3L-01040 GBM RNA-Seq tumor CPT0171580014 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3363074490 FASTQ R1_L007 unaligned CPTAC3 c8a6c392-49e3-4c4f-8713-3c6d44123580 e418a2487af982eec5356b237c0a0513 { 'aliquot_tag': 'ALQ_ddc56609', 'gdc_sample_type': 'Primary Tumor' } -C3L-01040.RNA-Seq.R2_L007.T C3L-01040 GBM RNA-Seq tumor CPT0171580014 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 3630546908 FASTQ R2_L007 unaligned CPTAC3 ff922fb1-2b12-4723-ad48-e33ab23fdbab 44c68228bc8a94bc35068b70c642058e { 'aliquot_tag': 'ALQ_ddc56609', 'gdc_sample_type': 'Primary Tumor' } +C3L-01040.RNA-Seq.R1_L007.T C3L-01040 GBM RNA-Seq tumor CPT0171580014 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3363074490 FASTQ R1_L007 unaligned CPTAC3 c8a6c392-49e3-4c4f-8713-3c6d44123580 e418a2487af982eec5356b237c0a0513 { 'aliquot_tag': 'ALQ_ddc56609', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01040.RNA-Seq.R2_L007.T C3L-01040 GBM RNA-Seq tumor CPT0171580014 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 3630546908 FASTQ R2_L007 unaligned CPTAC3 ff922fb1-2b12-4723-ad48-e33ab23fdbab 44c68228bc8a94bc35068b70c642058e { 'aliquot_tag': 'ALQ_ddc56609', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-01040.RNA-Seq.transcriptome.T.hg38 C3L-01040 GBM RNA-Seq tumor CPT0171580014 31ea1196-cc47-497c-b003-d97e27bd7db6.rna_seq.transcriptome.gdc_realn.bam 8024284595 BAM transcriptome harmonized CPTAC3 c019e3db-d405-446b-b77b-67138c367aca 27422530be51d4daed1000ecaceff666 { 'aliquot_tag': 'ALQ_ddc56609', 'gdc_sample_type': 'Primary Tumor' } C3L-01040.WGS.N C3L-01040 GBM WGS blood_normal CPT0171540002 CPT0171540002.WholeGenome.RP-1303.bam 60117320334 BAM aligned CPTAC3 aeedc25a-2e51-4a78-8ef3-f84eabeb3126 1f4ede43087665746c76cc2b5ac97089 { 'aliquot_tag': 'ALQ_e84d1f7c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01040.WGS.N.hg38 C3L-01040 GBM WGS blood_normal CPT0171540002 30d0d5fe-c267-4b3a-b5a0-b634438c5f22_wgs_gdc_realn.bam 88428000831 BAM harmonized CPTAC3 3c45f433-c594-4e0f-90e0-e7533a606720 72dea06187f1710a77e53b7c43b58497 { 'aliquot_tag': 'ALQ_e84d1f7c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5433,9 +5971,9 @@ C3L-01043.MethArray.Red.T C3L-01043 GBM Methylation Array tumor CPT0127420006 20 C3L-01043.miRNA-Seq.T C3L-01043 GBM miRNA-Seq tumor CPT0127420009 181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 242251931 BAM unaligned CPTAC3 c73a90b5-7d20-4ef1-ac2c-f02707e080c6 df9121f79f9997cb323357fad8274c86 { 'aliquot_tag': 'ALQ_10b3dbaf', 'gdc_sample_type': 'Primary Tumor' } C3L-01043.miRNA-Seq.T.hg38 C3L-01043 GBM miRNA-Seq tumor CPT0127420009 54f04b84-723b-444e-a180-46cb20c66670_mirnaseq_gdc_realn.bam 270837958 BAM harmonized CPTAC3 48895769-328c-4c55-9fb7-a72c16cb40ce 4ebdfe6d57781f5ba30cb2a15427431f { 'aliquot_tag': 'ALQ_10b3dbaf', 'gdc_sample_type': 'Primary Tumor' } C3L-01043.RNA-Seq.chimeric.T.hg38 C3L-01043 GBM RNA-Seq tumor CPT0127420009 c25a3ea3-a975-441e-a9ac-d4f3d970d914.rna_seq.chimeric.gdc_realn.bam 137852159 BAM chimeric harmonized CPTAC3 35071519-7704-4a72-876a-013521847174 b0e15661746833239005d8b308340f28 { 'aliquot_tag': 'ALQ_10b3dbaf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01043.RNA-Seq.genomic.T.hg38 C3L-01043 GBM RNA-Seq tumor CPT0127420009 c25a3ea3-a975-441e-a9ac-d4f3d970d914.rna_seq.genomic.gdc_realn.bam 8515582394 BAM genomic harmonized CPTAC3 ec0217aa-9f7d-4d3b-b7d7-6d123e7a1172 ee3a0f1927465f7f4069c2aea051fcaa { 'aliquot_tag': 'ALQ_10b3dbaf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01043.RNA-Seq.R1_L008.T C3L-01043 GBM RNA-Seq tumor CPT0127420009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTTTCG_S61_L008_R1_001.fastq.gz 3865603145 FASTQ R1_L008 unaligned CPTAC3 36ad73db-0ba7-4485-9c22-3ea0b8e4e6bf 55143397b69ea49a41e7ee84f5730969 { 'aliquot_tag': 'ALQ_10b3dbaf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01043.RNA-Seq.R2_L008.T C3L-01043 GBM RNA-Seq tumor CPT0127420009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTTTCG_S61_L008_R2_001.fastq.gz 4224633366 FASTQ R2_L008 unaligned CPTAC3 ac0dfa9c-403e-4bc5-a36a-e06c5504187a cfe41dc389b8968ccf998ccd66ea4fc0 { 'aliquot_tag': 'ALQ_10b3dbaf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01043.RNA-Seq.genomic.T.hg38 C3L-01043 GBM RNA-Seq tumor CPT0127420009 c25a3ea3-a975-441e-a9ac-d4f3d970d914.rna_seq.genomic.gdc_realn.bam 8515582394 BAM genomic harmonized CPTAC3 1b07260c-8e40-42cc-9aa2-fe5a5381fef4 ee3a0f1927465f7f4069c2aea051fcaa { 'aliquot_tag': 'ALQ_10b3dbaf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01043.RNA-Seq.R1_L008.T C3L-01043 GBM RNA-Seq tumor CPT0127420009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTTTCG_S61_L008_R1_001.fastq.gz 3865603145 FASTQ R1_L008 unaligned CPTAC3 36ad73db-0ba7-4485-9c22-3ea0b8e4e6bf 55143397b69ea49a41e7ee84f5730969 { 'aliquot_tag': 'ALQ_10b3dbaf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01043.RNA-Seq.R2_L008.T C3L-01043 GBM RNA-Seq tumor CPT0127420009 180508_UNC31-K00269_0127_AHTV7YBBXX_GTTTCG_S61_L008_R2_001.fastq.gz 4224633366 FASTQ R2_L008 unaligned CPTAC3 ac0dfa9c-403e-4bc5-a36a-e06c5504187a cfe41dc389b8968ccf998ccd66ea4fc0 { 'aliquot_tag': 'ALQ_10b3dbaf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-01043.RNA-Seq.transcriptome.T.hg38 C3L-01043 GBM RNA-Seq tumor CPT0127420009 c25a3ea3-a975-441e-a9ac-d4f3d970d914.rna_seq.transcriptome.gdc_realn.bam 10632696788 BAM transcriptome harmonized CPTAC3 f2cef2ea-e008-4ae3-a190-0c51eb979882 043cf9cdb957d35f0247da871df5d671 { 'aliquot_tag': 'ALQ_10b3dbaf', 'gdc_sample_type': 'Primary Tumor' } C3L-01043.WGS.N C3L-01043 GBM WGS blood_normal CPT0128550002 CPT0128550002.WholeGenome.RP-1303.bam 63355745989 BAM aligned CPTAC3 ddb6b503-bdde-443e-b66a-d9c91e1b125c 61a1d41ba1875e4615c54edbbf162e7a { 'aliquot_tag': 'ALQ_8557d7b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01043.WGS.N.hg38 C3L-01043 GBM WGS blood_normal CPT0128550002 a79dbdd5-f75c-475d-9779-9b789365a607_wgs_gdc_realn.bam 92189444626 BAM harmonized CPTAC3 44c2286d-e07c-4871-9f20-b4bcca0adba6 e2f3be0992ac9a7ce6986edf88a4cf47 { 'aliquot_tag': 'ALQ_8557d7b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5450,9 +5988,9 @@ C3L-01045.MethArray.Red.T C3L-01045 GBM Methylation Array tumor CPT0123530009 20 C3L-01045.miRNA-Seq.T C3L-01045 GBM miRNA-Seq tumor CPT0123530006 181108_UNC31-K00269_0162_AH255GBBXY_GTCCGC_S42_L004_R1_001.unaln.bam 226873124 BAM unaligned CPTAC3 c8282e06-79d9-4740-9329-39a350ba9142 6ba2a14d50cfe6727e00759a77697cd8 { 'aliquot_tag': 'ALQ_827f1838', 'gdc_sample_type': 'Primary Tumor' } C3L-01045.miRNA-Seq.T.hg38 C3L-01045 GBM miRNA-Seq tumor CPT0123530006 52412cf8-e6db-4630-b01d-0e0d34b84780_mirnaseq_gdc_realn.bam 262084693 BAM harmonized CPTAC3 0e9a344a-195f-480d-8b60-4bcf8ba40140 db275f7f4fb02d638eb6bd13d737e383 { 'aliquot_tag': 'ALQ_827f1838', 'gdc_sample_type': 'Primary Tumor' } C3L-01045.RNA-Seq.chimeric.T.hg38 C3L-01045 GBM RNA-Seq tumor CPT0123530006 6dcbddc4-d2c7-4af3-a1e8-cfe0489d6645.rna_seq.chimeric.gdc_realn.bam 55852122 BAM chimeric harmonized CPTAC3 63bc410a-62a8-4f6f-b0cb-33328d4a4e5d f9453bf239177de9594130839dbe10ad { 'aliquot_tag': 'ALQ_827f1838', 'gdc_sample_type': 'Primary Tumor' } -C3L-01045.RNA-Seq.genomic.T.hg38 C3L-01045 GBM RNA-Seq tumor CPT0123530006 6dcbddc4-d2c7-4af3-a1e8-cfe0489d6645.rna_seq.genomic.gdc_realn.bam 8833936145 BAM genomic harmonized CPTAC3 db0d54b3-3fae-407c-8f4b-bacc1de3c41e bbccc842394d9c95e9dae9be4cee9c61 { 'aliquot_tag': 'ALQ_827f1838', 'gdc_sample_type': 'Primary Tumor' } -C3L-01045.RNA-Seq.R1_L004.T C3L-01045 GBM RNA-Seq tumor CPT0123530006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGAAA_S14_L004_R1_001.fastq.gz 3756365950 FASTQ R1_L004 unaligned CPTAC3 cf9158dd-fc4c-494a-a933-1eb497bfa401 99466af112260f9d85b0a46eada02b02 { 'aliquot_tag': 'ALQ_827f1838', 'gdc_sample_type': 'Primary Tumor' } -C3L-01045.RNA-Seq.R2_L004.T C3L-01045 GBM RNA-Seq tumor CPT0123530006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGAAA_S14_L004_R2_001.fastq.gz 3835368061 FASTQ R2_L004 unaligned CPTAC3 bfc91f64-f77a-4aca-a218-bd14e6152eaa f24b68fe34c8b5123535932f9f52262a { 'aliquot_tag': 'ALQ_827f1838', 'gdc_sample_type': 'Primary Tumor' } +C3L-01045.RNA-Seq.genomic.T.hg38 C3L-01045 GBM RNA-Seq tumor CPT0123530006 6dcbddc4-d2c7-4af3-a1e8-cfe0489d6645.rna_seq.genomic.gdc_realn.bam 8833936145 BAM genomic harmonized CPTAC3 6b1cf0a9-cfca-45d7-ac89-d41f525f541b bbccc842394d9c95e9dae9be4cee9c61 { 'aliquot_tag': 'ALQ_827f1838', 'gdc_sample_type': 'Primary Tumor' } +C3L-01045.RNA-Seq.R1_L004.T C3L-01045 GBM RNA-Seq tumor CPT0123530006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGAAA_S14_L004_R1_001.fastq.gz 3756365950 FASTQ R1_L004 unaligned CPTAC3 cf9158dd-fc4c-494a-a933-1eb497bfa401 99466af112260f9d85b0a46eada02b02 { 'aliquot_tag': 'ALQ_827f1838', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01045.RNA-Seq.R2_L004.T C3L-01045 GBM RNA-Seq tumor CPT0123530006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGAAA_S14_L004_R2_001.fastq.gz 3835368061 FASTQ R2_L004 unaligned CPTAC3 bfc91f64-f77a-4aca-a218-bd14e6152eaa f24b68fe34c8b5123535932f9f52262a { 'aliquot_tag': 'ALQ_827f1838', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01045.RNA-Seq.transcriptome.T.hg38 C3L-01045 GBM RNA-Seq tumor CPT0123530006 6dcbddc4-d2c7-4af3-a1e8-cfe0489d6645.rna_seq.transcriptome.gdc_realn.bam 8822593820 BAM transcriptome harmonized CPTAC3 6faa6cd7-9135-429a-85a1-f115774888af b3fe60ccd69825527a1d330158285396 { 'aliquot_tag': 'ALQ_827f1838', 'gdc_sample_type': 'Primary Tumor' } C3L-01045.WGS.N C3L-01045 GBM WGS blood_normal CPT0124830002 CPT0124830002.WholeGenome.RP-1303.bam 56031587983 BAM aligned CPTAC3 e8bf7a9c-6b7a-4139-9b31-9b6feedfe9b6 be660084ecacdbe62fb1c8dd4ab93a8b { 'aliquot_tag': 'ALQ_fc2bf171', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01045.WGS.N.hg38 C3L-01045 GBM WGS blood_normal CPT0124830002 ba98100e-1c34-4d68-8b1a-f5f5114d6d7f_wgs_gdc_realn.bam 82160164266 BAM harmonized CPTAC3 18051194-5341-4e37-8c41-52ebb75a1c10 e5df46ddd707a9708078212aa14c1a40 { 'aliquot_tag': 'ALQ_fc2bf171', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5468,8 +6006,8 @@ C3L-01046.miRNA-Seq.T C3L-01046 GBM miRNA-Seq tumor CPT0127480010 181108_UNC31-K C3L-01046.miRNA-Seq.T.hg38 C3L-01046 GBM miRNA-Seq tumor CPT0127480010 16f58f3b-7a0a-460b-9d3d-3c4e8188c33b_mirnaseq_gdc_realn.bam 264137937 BAM harmonized CPTAC3 fe98d6a4-fd75-4175-afcd-847a1c1bcfe6 37f864197390822f44ca146af53cb008 { 'aliquot_tag': 'ALQ_3ac44aeb', 'gdc_sample_type': 'Primary Tumor' } C3L-01046.RNA-Seq.chimeric.T.hg38 C3L-01046 GBM RNA-Seq tumor CPT0127480010 f413e336-c424-42a8-9350-83f3dd151889.rna_seq.chimeric.gdc_realn.bam 103005764 BAM chimeric harmonized CPTAC3 3b92d885-2426-4650-b63a-f7576eb17015 ee75fd209291560b0516f8d56bc0d85d { 'aliquot_tag': 'ALQ_3ac44aeb', 'gdc_sample_type': 'Primary Tumor' } C3L-01046.RNA-Seq.genomic.T.hg38 C3L-01046 GBM RNA-Seq tumor CPT0127480010 f413e336-c424-42a8-9350-83f3dd151889.rna_seq.genomic.gdc_realn.bam 9101666864 BAM genomic harmonized CPTAC3 fba8c096-7004-4db4-98f1-e041089229cc 33513a84aece751e07a6cd2e0e55d9af { 'aliquot_tag': 'ALQ_3ac44aeb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01046.RNA-Seq.R1_L008.T C3L-01046 GBM RNA-Seq tumor CPT0127480010 180508_UNC31-K00269_0127_AHTV7YBBXX_CGTACG_S60_L008_R1_001.fastq.gz 3915392286 FASTQ R1_L008 unaligned CPTAC3 17f3f9f8-56ce-4669-bd4c-870295c951d5 415d6601e65602a38312a1bf70e73179 { 'aliquot_tag': 'ALQ_3ac44aeb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01046.RNA-Seq.R2_L008.T C3L-01046 GBM RNA-Seq tumor CPT0127480010 180508_UNC31-K00269_0127_AHTV7YBBXX_CGTACG_S60_L008_R2_001.fastq.gz 4262863355 FASTQ R2_L008 unaligned CPTAC3 430cad38-35cd-4fb6-b511-eac776b17c2a a318f0b25bf6f78f9523e11692c1a5d7 { 'aliquot_tag': 'ALQ_3ac44aeb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01046.RNA-Seq.R1_L008.T C3L-01046 GBM RNA-Seq tumor CPT0127480010 180508_UNC31-K00269_0127_AHTV7YBBXX_CGTACG_S60_L008_R1_001.fastq.gz 3915392286 FASTQ R1_L008 unaligned CPTAC3 17f3f9f8-56ce-4669-bd4c-870295c951d5 415d6601e65602a38312a1bf70e73179 { 'aliquot_tag': 'ALQ_3ac44aeb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01046.RNA-Seq.R2_L008.T C3L-01046 GBM RNA-Seq tumor CPT0127480010 180508_UNC31-K00269_0127_AHTV7YBBXX_CGTACG_S60_L008_R2_001.fastq.gz 4262863355 FASTQ R2_L008 unaligned CPTAC3 430cad38-35cd-4fb6-b511-eac776b17c2a a318f0b25bf6f78f9523e11692c1a5d7 { 'aliquot_tag': 'ALQ_3ac44aeb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-01046.RNA-Seq.transcriptome.T.hg38 C3L-01046 GBM RNA-Seq tumor CPT0127480010 f413e336-c424-42a8-9350-83f3dd151889.rna_seq.transcriptome.gdc_realn.bam 10920664590 BAM transcriptome harmonized CPTAC3 f7052fcd-aba3-46e9-a846-ed2a3489fec5 4b8d5588d18aed2de742773e4872baa8 { 'aliquot_tag': 'ALQ_3ac44aeb', 'gdc_sample_type': 'Primary Tumor' } C3L-01046.WGS.N C3L-01046 GBM WGS blood_normal CPT0128570002 CPT0128570002.WholeGenome.RP-1303.bam 52816280424 BAM aligned CPTAC3 a03caad0-1a0c-4bf8-8b59-02b55bb142e8 9850ea7a6ca2164004835b775b863921 { 'aliquot_tag': 'ALQ_72952e1b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01046.WGS.N.hg38 C3L-01046 GBM WGS blood_normal CPT0128570002 1cd7030a-e45b-4933-a33a-8b9695c7f05d_wgs_gdc_realn.bam 77049093776 BAM harmonized CPTAC3 ebb12c39-da23-41fa-a0a0-5acef3da13d2 056426862a51a2f27d3b834aa3a00b95 { 'aliquot_tag': 'ALQ_72952e1b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5485,8 +6023,8 @@ C3L-01048.miRNA-Seq.T C3L-01048 GBM miRNA-Seq tumor CPT0217190009 190228_UNC32-K C3L-01048.miRNA-Seq.T.hg38 C3L-01048 GBM miRNA-Seq tumor CPT0217190009 6e9382f6-62a8-4d40-8655-6dca5034c3d2_mirnaseq_gdc_realn.bam 295833382 BAM harmonized CPTAC3 94b064b1-4113-4f1a-8f01-9a2b0ae2e724 ac9ba3a3eece5ddcacceeae3f59fecb9 { 'aliquot_tag': 'ALQ_80ac402b', 'gdc_sample_type': 'Primary Tumor' } C3L-01048.RNA-Seq.chimeric.T.hg38 C3L-01048 GBM RNA-Seq tumor CPT0217190009 2671b18f-f4b9-4235-974c-3410ae043726.rna_seq.chimeric.gdc_realn.bam 41047462 BAM chimeric harmonized CPTAC3 890637b9-ed1f-4d2c-aaa8-f216b59b5428 30566c0c90fe03106a8a3fabc3795919 { 'aliquot_tag': 'ALQ_80ac402b', 'gdc_sample_type': 'Primary Tumor' } C3L-01048.RNA-Seq.genomic.T.hg38 C3L-01048 GBM RNA-Seq tumor CPT0217190009 2671b18f-f4b9-4235-974c-3410ae043726.rna_seq.genomic.gdc_realn.bam 8457256253 BAM genomic harmonized CPTAC3 55b9eeb2-9e4c-4f2c-a9cb-7462e97639a0 eae375941f4b73b4f555b809a22b9f7d { 'aliquot_tag': 'ALQ_80ac402b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01048.RNA-Seq.R1_L007.T C3L-01048 GBM RNA-Seq tumor CPT0217190009 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTCAA_S9_L007_R1_001.fastq.gz 3999600510 FASTQ R1_L007 unaligned CPTAC3 027d5266-ce0a-4a61-bcc4-5afd0b31ea6b 4956b7f1ca26616f39758340b12e6090 { 'aliquot_tag': 'ALQ_80ac402b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01048.RNA-Seq.R2_L007.T C3L-01048 GBM RNA-Seq tumor CPT0217190009 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTCAA_S9_L007_R2_001.fastq.gz 4137948301 FASTQ R2_L007 unaligned CPTAC3 1c544c27-8c98-451e-9a9f-0027fda725f9 32ed3b01530c33f9bedc4d8322dcb80b { 'aliquot_tag': 'ALQ_80ac402b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01048.RNA-Seq.R1_L007.T C3L-01048 GBM RNA-Seq tumor CPT0217190009 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTCAA_S9_L007_R1_001.fastq.gz 3999600510 FASTQ R1_L007 unaligned CPTAC3 027d5266-ce0a-4a61-bcc4-5afd0b31ea6b 4956b7f1ca26616f39758340b12e6090 { 'aliquot_tag': 'ALQ_80ac402b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01048.RNA-Seq.R2_L007.T C3L-01048 GBM RNA-Seq tumor CPT0217190009 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTCAA_S9_L007_R2_001.fastq.gz 4137948301 FASTQ R2_L007 unaligned CPTAC3 1c544c27-8c98-451e-9a9f-0027fda725f9 32ed3b01530c33f9bedc4d8322dcb80b { 'aliquot_tag': 'ALQ_80ac402b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-01048.RNA-Seq.transcriptome.T.hg38 C3L-01048 GBM RNA-Seq tumor CPT0217190009 2671b18f-f4b9-4235-974c-3410ae043726.rna_seq.transcriptome.gdc_realn.bam 9239831720 BAM transcriptome harmonized CPTAC3 f91140bf-5960-40ba-af89-4e7b8a06175f e1970e6d7d6c50de178c346560274b6b { 'aliquot_tag': 'ALQ_80ac402b', 'gdc_sample_type': 'Primary Tumor' } C3L-01048.WGS.N C3L-01048 GBM WGS blood_normal CPT0220100002 CPT0220100002.WholeGenome.RP-1303.bam 64064878335 BAM aligned CPTAC3 5de49997-9916-4e86-9452-e4b289b10023 fe50d8c56a13609c31d97813356acbd7 { 'aliquot_tag': 'ALQ_5146c2bf', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01048.WGS.N.hg38 C3L-01048 GBM WGS blood_normal CPT0220100002 9866d68b-ff3e-47b2-9d84-30ce5a8cfdf4_wgs_gdc_realn.bam 91768712836 BAM harmonized CPTAC3 db210706-5e05-4ef3-b3e7-9d61b6338696 eaa455f10411d23aecf97b2433ce8592 { 'aliquot_tag': 'ALQ_5146c2bf', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5501,9 +6039,9 @@ C3L-01049.MethArray.Red.T C3L-01049 GBM Methylation Array tumor CPT0217430011 20 C3L-01049.miRNA-Seq.T C3L-01049 GBM miRNA-Seq tumor CPT0217430014 190228_UNC32-K00270_0151_AHYLY3BBXX_GAGTGG_S23_L008_R1_001.unaln.bam 333071684 BAM unaligned CPTAC3 6ea23d36-8a17-42f7-9688-eff19f71602b 97ff17e95b09cc1e3ab6700438813271 { 'aliquot_tag': 'ALQ_fd7b84c5', 'gdc_sample_type': 'Primary Tumor' } C3L-01049.miRNA-Seq.T.hg38 C3L-01049 GBM miRNA-Seq tumor CPT0217430014 1d611dfb-8fc5-45f5-a9a9-784c88828539_mirnaseq_gdc_realn.bam 372486917 BAM harmonized CPTAC3 3e18b753-091b-4411-9a60-523b280d07fc 0d2df50b223ddfbbdca4d2ca44fbdd79 { 'aliquot_tag': 'ALQ_fd7b84c5', 'gdc_sample_type': 'Primary Tumor' } C3L-01049.RNA-Seq.chimeric.T.hg38 C3L-01049 GBM RNA-Seq tumor CPT0217430014 0f1b8440-4376-4861-a4fd-62511a819a97.rna_seq.chimeric.gdc_realn.bam 31309129 BAM chimeric harmonized CPTAC3 f69d9d0e-eab0-4cf8-b7ce-a562fa1d0416 da8828d5e37994491475de7b95d2f078 { 'aliquot_tag': 'ALQ_fd7b84c5', 'gdc_sample_type': 'Primary Tumor' } -C3L-01049.RNA-Seq.genomic.T.hg38 C3L-01049 GBM RNA-Seq tumor CPT0217430014 0f1b8440-4376-4861-a4fd-62511a819a97.rna_seq.genomic.gdc_realn.bam 7826198976 BAM genomic harmonized CPTAC3 9b646468-7987-4ae6-9ccd-66d59f93be9c 2ee21bad4e28297bd714f9dad956d41e { 'aliquot_tag': 'ALQ_fd7b84c5', 'gdc_sample_type': 'Primary Tumor' } -C3L-01049.RNA-Seq.R1_L007.T C3L-01049 GBM RNA-Seq tumor CPT0217430014 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTTCC_S11_L007_R1_001.fastq.gz 3664572534 FASTQ R1_L007 unaligned CPTAC3 61ee058b-1a61-4d46-baf4-be7ade0664e7 fbc77c4f9b23efeed20fc12d1610b92a { 'aliquot_tag': 'ALQ_fd7b84c5', 'gdc_sample_type': 'Primary Tumor' } -C3L-01049.RNA-Seq.R2_L007.T C3L-01049 GBM RNA-Seq tumor CPT0217430014 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTTCC_S11_L007_R2_001.fastq.gz 3808741372 FASTQ R2_L007 unaligned CPTAC3 c72c7346-e3c9-48f2-be17-8a9c7fc649de 154f6606ec2a44d48e19306c4b6c9c51 { 'aliquot_tag': 'ALQ_fd7b84c5', 'gdc_sample_type': 'Primary Tumor' } +C3L-01049.RNA-Seq.genomic.T.hg38 C3L-01049 GBM RNA-Seq tumor CPT0217430014 0f1b8440-4376-4861-a4fd-62511a819a97.rna_seq.genomic.gdc_realn.bam 7826198976 BAM genomic harmonized CPTAC3 46d91cb7-b2e5-4719-b7e0-1bc465bab407 2ee21bad4e28297bd714f9dad956d41e { 'aliquot_tag': 'ALQ_fd7b84c5', 'gdc_sample_type': 'Primary Tumor' } +C3L-01049.RNA-Seq.R1_L007.T C3L-01049 GBM RNA-Seq tumor CPT0217430014 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTTCC_S11_L007_R1_001.fastq.gz 3664572534 FASTQ R1_L007 unaligned CPTAC3 61ee058b-1a61-4d46-baf4-be7ade0664e7 fbc77c4f9b23efeed20fc12d1610b92a { 'aliquot_tag': 'ALQ_fd7b84c5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01049.RNA-Seq.R2_L007.T C3L-01049 GBM RNA-Seq tumor CPT0217430014 180918_UNC31-K00269_0152_AHWNJTBBXX_AGTTCC_S11_L007_R2_001.fastq.gz 3808741372 FASTQ R2_L007 unaligned CPTAC3 c72c7346-e3c9-48f2-be17-8a9c7fc649de 154f6606ec2a44d48e19306c4b6c9c51 { 'aliquot_tag': 'ALQ_fd7b84c5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-01049.RNA-Seq.transcriptome.T.hg38 C3L-01049 GBM RNA-Seq tumor CPT0217430014 0f1b8440-4376-4861-a4fd-62511a819a97.rna_seq.transcriptome.gdc_realn.bam 10768110944 BAM transcriptome harmonized CPTAC3 093e1a07-81d6-48f4-833c-34587b0c5e2d 2bc61a3a8352f29f96bb1f9ab9a753b0 { 'aliquot_tag': 'ALQ_fd7b84c5', 'gdc_sample_type': 'Primary Tumor' } C3L-01049.WGS.N C3L-01049 GBM WGS blood_normal CPT0220120002 CPT0220120002.WholeGenome.RP-1303.bam 62955891917 BAM aligned CPTAC3 d118e7e1-8e32-48d8-a87a-7a1a3e38247c 7caf47880e139d4f656adb4eb3727376 { 'aliquot_tag': 'ALQ_2b8691df', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01049.WGS.N.hg38 C3L-01049 GBM WGS blood_normal CPT0220120002 6166ddc6-db74-45c1-a5cc-d3514c4ae107_wgs_gdc_realn.bam 90939929389 BAM harmonized CPTAC3 c8e3c1a8-998c-4c1e-a46d-a79800017fdb 2851a6e9eb3b91992c8e2f7b39827940 { 'aliquot_tag': 'ALQ_2b8691df', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5520,9 +6058,9 @@ C3L-01051.MethArray.Red.T C3L-01051 PDA Methylation Array tumor CPT0123650009 20 C3L-01051.miRNA-Seq.T C3L-01051 PDA miRNA-Seq tumor CPT0123650006 181108_UNC31-K00269_0162_AH255GBBXY_GTGAAA_S43_L004_R1_001.unaln.bam 237231392 BAM unaligned CPTAC3 e2e76107-273e-44c7-ad07-f4a2912ccbd2 fe2d13778aff8f71cdf05bca25656f98 { 'aliquot_tag': 'ALQ_8bab9f36', 'gdc_sample_type': 'Primary Tumor' } C3L-01051.miRNA-Seq.T.hg38 C3L-01051 PDA miRNA-Seq tumor CPT0123650006 d2c5b88f-3965-46b5-af3f-e3bfbb3a22f0_mirnaseq_gdc_realn.bam 264400126 BAM harmonized CPTAC3 6bcd9512-1f8c-4c94-baa2-0fe0b7d6bf3b c104d24918e27458a3275342aab672ec { 'aliquot_tag': 'ALQ_8bab9f36', 'gdc_sample_type': 'Primary Tumor' } C3L-01051.RNA-Seq.chimeric.T.hg38 C3L-01051 PDA RNA-Seq tumor CPT0123650006 103acc08-1709-44a3-bb93-262d7d50e1f0.rna_seq.chimeric.gdc_realn.bam 58388385 BAM chimeric harmonized CPTAC3 1519019a-d955-4bb4-a230-400976db64cb fc3bced24516077a8f35a9b5562dfd7c { 'aliquot_tag': 'ALQ_8bab9f36', 'gdc_sample_type': 'Primary Tumor' } -C3L-01051.RNA-Seq.genomic.T.hg38 C3L-01051 PDA RNA-Seq tumor CPT0123650006 103acc08-1709-44a3-bb93-262d7d50e1f0.rna_seq.genomic.gdc_realn.bam 9011577543 BAM genomic harmonized CPTAC3 9388e2eb-2863-4df0-bd6b-fa2809e61a55 a02c6bfaea65f83afc29bf8f9da8451b { 'aliquot_tag': 'ALQ_8bab9f36', 'gdc_sample_type': 'Primary Tumor' } -C3L-01051.RNA-Seq.R1_L003.T C3L-01051 PDA RNA-Seq tumor CPT0123650006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGGCC_S9_L003_R1_001.fastq.gz 3851822716 FASTQ R1_L003 unaligned CPTAC3 ebe96da7-8ff0-44df-972f-a39af48988fc 458286664c4f0f037c1364bb8b123fb6 { 'aliquot_tag': 'ALQ_8bab9f36', 'gdc_sample_type': 'Primary Tumor' } -C3L-01051.RNA-Seq.R2_L003.T C3L-01051 PDA RNA-Seq tumor CPT0123650006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGGCC_S9_L003_R2_001.fastq.gz 4221160862 FASTQ R2_L003 unaligned CPTAC3 f960daa9-575a-4dbd-9361-7d39ac4d98ee 0fa6d8d5bcc1f4610c3139104243b486 { 'aliquot_tag': 'ALQ_8bab9f36', 'gdc_sample_type': 'Primary Tumor' } +C3L-01051.RNA-Seq.genomic.T.hg38 C3L-01051 PDA RNA-Seq tumor CPT0123650006 103acc08-1709-44a3-bb93-262d7d50e1f0.rna_seq.genomic.gdc_realn.bam 9011577543 BAM genomic harmonized CPTAC3 4763601c-e7be-4879-9961-9ff2a6591b87 a02c6bfaea65f83afc29bf8f9da8451b { 'aliquot_tag': 'ALQ_8bab9f36', 'gdc_sample_type': 'Primary Tumor' } +C3L-01051.RNA-Seq.R1_L003.T C3L-01051 PDA RNA-Seq tumor CPT0123650006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGGCC_S9_L003_R1_001.fastq.gz 3851822716 FASTQ R1_L003 unaligned CPTAC3 ebe96da7-8ff0-44df-972f-a39af48988fc 458286664c4f0f037c1364bb8b123fb6 { 'aliquot_tag': 'ALQ_8bab9f36', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01051.RNA-Seq.R2_L003.T C3L-01051 PDA RNA-Seq tumor CPT0123650006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTGGCC_S9_L003_R2_001.fastq.gz 4221160862 FASTQ R2_L003 unaligned CPTAC3 f960daa9-575a-4dbd-9361-7d39ac4d98ee 0fa6d8d5bcc1f4610c3139104243b486 { 'aliquot_tag': 'ALQ_8bab9f36', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-01051.RNA-Seq.transcriptome.T.hg38 C3L-01051 PDA RNA-Seq tumor CPT0123650006 103acc08-1709-44a3-bb93-262d7d50e1f0.rna_seq.transcriptome.gdc_realn.bam 10910056002 BAM transcriptome harmonized CPTAC3 3f62fd10-e9e2-4e26-a06d-88cace567816 7807d6e6d009d7b5a1a77ff15483a89d { 'aliquot_tag': 'ALQ_8bab9f36', 'gdc_sample_type': 'Primary Tumor' } C3L-01051.Targeted.T C3L-01051 PDA Targeted Sequencing tumor CPT0123650009_1 CPT0123650009_1.CustomSelection.RP-1303.PDO-18786.bam 4491199262 BAM aligned CPTAC3 89fe3652-aafe-4f66-8c25-d9203156f908 178b48cdc2859dd8463f88ac24095be2 { 'aliquot_tag': 'ALQ_cfd48068', 'gdc_sample_type': 'Primary Tumor' } C3L-01051.Targeted.T.hg38 C3L-01051 PDA Targeted Sequencing tumor CPT0123650009_1 a295bcde-bfa0-492b-99ad-3fa2b7a8c6ec_targetedsequencing_gdc_realn.bam 6498004543 BAM harmonized CPTAC3 135f45bf-729a-41ef-9cb9-85b0697cf11e f62df71f3187ac1d1a1b12bde7a86b82 { 'aliquot_tag': 'ALQ_cfd48068', 'gdc_sample_type': 'Primary Tumor' } @@ -5547,9 +6085,9 @@ C3L-01052.MethArray.Red.T C3L-01052 PDA Methylation Array tumor CPT0123750006 20 C3L-01052.miRNA-Seq.T C3L-01052 PDA miRNA-Seq tumor CPT0123750009 181119_UNC31-K00269_0165_AH27WCBBXY_CACGAT_S7_L001_R1_001.unaln.bam 263435489 BAM unaligned CPTAC3 dabaad35-3eb7-4bc7-b044-6527769c7727 049a001857674cfc2842b82d3d1fa55d { 'aliquot_tag': 'ALQ_d0485102', 'gdc_sample_type': 'Primary Tumor' } C3L-01052.miRNA-Seq.T.hg38 C3L-01052 PDA miRNA-Seq tumor CPT0123750009 e30bdd9b-fb52-4072-9d55-f7ec866497c6_mirnaseq_gdc_realn.bam 291425399 BAM harmonized CPTAC3 54b65e26-16ba-4eec-86c0-3be0b363b559 c848f3091382fcbb12914d4da0caefd5 { 'aliquot_tag': 'ALQ_d0485102', 'gdc_sample_type': 'Primary Tumor' } C3L-01052.RNA-Seq.chimeric.T.hg38 C3L-01052 PDA RNA-Seq tumor CPT0123750009 aefc84ef-6f90-4a13-ada1-964a25d30468.rna_seq.chimeric.gdc_realn.bam 27728126 BAM chimeric harmonized CPTAC3 e34e194e-40be-412d-9388-abfbe95889ae ae354ba80158db64d3639bff8cf0694d { 'aliquot_tag': 'ALQ_d0485102', 'gdc_sample_type': 'Primary Tumor' } -C3L-01052.RNA-Seq.genomic.T.hg38 C3L-01052 PDA RNA-Seq tumor CPT0123750009 aefc84ef-6f90-4a13-ada1-964a25d30468.rna_seq.genomic.gdc_realn.bam 9050051212 BAM genomic harmonized CPTAC3 6632c4c6-e054-4f30-9ced-d833d5c14618 138c7c5cd6f7059987e7540867618c2f { 'aliquot_tag': 'ALQ_d0485102', 'gdc_sample_type': 'Primary Tumor' } -C3L-01052.RNA-Seq.R1_L004.T C3L-01052 PDA RNA-Seq tumor CPT0123750009 180516_UNC31-K00269_0130_BHV22JBBXX_CAGATC_S13_L004_R1_001.fastq.gz 3824714033 FASTQ R1_L004 unaligned CPTAC3 d9a41fa8-0081-4609-92ee-7c2b2279a26e b3d6198b6165a0d8de828ce30212faa9 { 'aliquot_tag': 'ALQ_d0485102', 'gdc_sample_type': 'Primary Tumor' } -C3L-01052.RNA-Seq.R2_L004.T C3L-01052 PDA RNA-Seq tumor CPT0123750009 180516_UNC31-K00269_0130_BHV22JBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4182715612 FASTQ R2_L004 unaligned CPTAC3 04e48ed4-f66d-4f12-b305-2115e55f0c4d 4033563896912edd370c9595a6c261a8 { 'aliquot_tag': 'ALQ_d0485102', 'gdc_sample_type': 'Primary Tumor' } +C3L-01052.RNA-Seq.genomic.T.hg38 C3L-01052 PDA RNA-Seq tumor CPT0123750009 aefc84ef-6f90-4a13-ada1-964a25d30468.rna_seq.genomic.gdc_realn.bam 9050051212 BAM genomic harmonized CPTAC3 57f9faeb-2682-455b-a7b6-379a23256c69 138c7c5cd6f7059987e7540867618c2f { 'aliquot_tag': 'ALQ_d0485102', 'gdc_sample_type': 'Primary Tumor' } +C3L-01052.RNA-Seq.R1_L004.T C3L-01052 PDA RNA-Seq tumor CPT0123750009 180516_UNC31-K00269_0130_BHV22JBBXX_CAGATC_S13_L004_R1_001.fastq.gz 3824714033 FASTQ R1_L004 unaligned CPTAC3 d9a41fa8-0081-4609-92ee-7c2b2279a26e b3d6198b6165a0d8de828ce30212faa9 { 'aliquot_tag': 'ALQ_d0485102', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01052.RNA-Seq.R2_L004.T C3L-01052 PDA RNA-Seq tumor CPT0123750009 180516_UNC31-K00269_0130_BHV22JBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4182715612 FASTQ R2_L004 unaligned CPTAC3 04e48ed4-f66d-4f12-b305-2115e55f0c4d 4033563896912edd370c9595a6c261a8 { 'aliquot_tag': 'ALQ_d0485102', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01052.RNA-Seq.transcriptome.T.hg38 C3L-01052 PDA RNA-Seq tumor CPT0123750009 aefc84ef-6f90-4a13-ada1-964a25d30468.rna_seq.transcriptome.gdc_realn.bam 11593992511 BAM transcriptome harmonized CPTAC3 031c30c7-cdda-4bb3-9374-2f21e60a6636 510d3c93409345c45cc86500b8346d7c { 'aliquot_tag': 'ALQ_d0485102', 'gdc_sample_type': 'Primary Tumor' } C3L-01052.Targeted.T C3L-01052 PDA Targeted Sequencing tumor CPT0123750006_1 CPT0123750006_1.CustomSelection.RP-1303.PDO-18786.bam 4757345248 BAM aligned CPTAC3 2dd8da54-f233-4eee-a270-08cdbe522cda 864f930c77491330e1c5cb654335aab2 { 'aliquot_tag': 'ALQ_822c7cb', 'gdc_sample_type': 'Primary Tumor' } C3L-01052.Targeted.T.hg38 C3L-01052 PDA Targeted Sequencing tumor CPT0123750006_1 cb7c42f5-cf99-4123-8a5d-fbdd71717020_targetedsequencing_gdc_realn.bam 6642237150 BAM harmonized CPTAC3 e6c9309a-9bae-4a8f-abf3-7d367f5852ea 50917290e701df9039c284dcf796b0a9 { 'aliquot_tag': 'ALQ_822c7cb', 'gdc_sample_type': 'Primary Tumor' } @@ -5574,9 +6112,9 @@ C3L-01053.MethArray.Red.T C3L-01053 PDA Methylation Array tumor CPT0123860009 20 C3L-01053.miRNA-Seq.T C3L-01053 PDA miRNA-Seq tumor CPT0123860006 181108_UNC31-K00269_0162_AH255GBBXY_GTGGCC_S44_L004_R1_001.unaln.bam 247830813 BAM unaligned CPTAC3 17493bc9-781b-4e63-9401-8f5ebf85fa5b 30c9ba07d6f65acd6a40b290405f0a08 { 'aliquot_tag': 'ALQ_f6018496', 'gdc_sample_type': 'Primary Tumor' } C3L-01053.miRNA-Seq.T.hg38 C3L-01053 PDA miRNA-Seq tumor CPT0123860006 85694142-7852-4d41-aaa5-615c4ad67ae8_mirnaseq_gdc_realn.bam 282270192 BAM harmonized CPTAC3 da7d969a-78ad-4fec-a296-248fe46a2f73 e5b5a47a3799073e08b67e876823b91f { 'aliquot_tag': 'ALQ_f6018496', 'gdc_sample_type': 'Primary Tumor' } C3L-01053.RNA-Seq.chimeric.T.hg38 C3L-01053 PDA RNA-Seq tumor CPT0123860006 5dde233b-37cb-4bcb-9c09-fd9464e0fd27.rna_seq.chimeric.gdc_realn.bam 59064682 BAM chimeric harmonized CPTAC3 c055be0f-965f-4e20-847a-b45aed6bc9fa 9b75338cf93e96cdadfe1ec0acf7f97b { 'aliquot_tag': 'ALQ_f6018496', 'gdc_sample_type': 'Primary Tumor' } -C3L-01053.RNA-Seq.genomic.T.hg38 C3L-01053 PDA RNA-Seq tumor CPT0123860006 5dde233b-37cb-4bcb-9c09-fd9464e0fd27.rna_seq.genomic.gdc_realn.bam 9471469221 BAM genomic harmonized CPTAC3 6c99929c-648d-40b1-8553-6aab75fba075 f0826e8978e3f8934257695620c197a0 { 'aliquot_tag': 'ALQ_f6018496', 'gdc_sample_type': 'Primary Tumor' } -C3L-01053.RNA-Seq.R1_L004.T C3L-01053 PDA RNA-Seq tumor CPT0123860006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTTTCG_S13_L004_R1_001.fastq.gz 4191047540 FASTQ R1_L004 unaligned CPTAC3 cbb94b79-ed5d-42e8-989a-a66d75de8aa3 8799d6e44c5e1691a2a9d1b3373be2ac { 'aliquot_tag': 'ALQ_f6018496', 'gdc_sample_type': 'Primary Tumor' } -C3L-01053.RNA-Seq.R2_L004.T C3L-01053 PDA RNA-Seq tumor CPT0123860006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTTTCG_S13_L004_R2_001.fastq.gz 4568537065 FASTQ R2_L004 unaligned CPTAC3 020b2b6d-f3b9-4fd8-94b2-29ab99d7550d 9bc83a56bb84631d081ac86a064910a3 { 'aliquot_tag': 'ALQ_f6018496', 'gdc_sample_type': 'Primary Tumor' } +C3L-01053.RNA-Seq.genomic.T.hg38 C3L-01053 PDA RNA-Seq tumor CPT0123860006 5dde233b-37cb-4bcb-9c09-fd9464e0fd27.rna_seq.genomic.gdc_realn.bam 9471469221 BAM genomic harmonized CPTAC3 e1db1cae-3065-4591-af7a-6f3434526e92 f0826e8978e3f8934257695620c197a0 { 'aliquot_tag': 'ALQ_f6018496', 'gdc_sample_type': 'Primary Tumor' } +C3L-01053.RNA-Seq.R1_L004.T C3L-01053 PDA RNA-Seq tumor CPT0123860006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTTTCG_S13_L004_R1_001.fastq.gz 4191047540 FASTQ R1_L004 unaligned CPTAC3 cbb94b79-ed5d-42e8-989a-a66d75de8aa3 8799d6e44c5e1691a2a9d1b3373be2ac { 'aliquot_tag': 'ALQ_f6018496', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01053.RNA-Seq.R2_L004.T C3L-01053 PDA RNA-Seq tumor CPT0123860006 180508_UNC31-K00269_0128_BHTY7KBBXX_GTTTCG_S13_L004_R2_001.fastq.gz 4568537065 FASTQ R2_L004 unaligned CPTAC3 020b2b6d-f3b9-4fd8-94b2-29ab99d7550d 9bc83a56bb84631d081ac86a064910a3 { 'aliquot_tag': 'ALQ_f6018496', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01053.RNA-Seq.transcriptome.T.hg38 C3L-01053 PDA RNA-Seq tumor CPT0123860006 5dde233b-37cb-4bcb-9c09-fd9464e0fd27.rna_seq.transcriptome.gdc_realn.bam 12623593859 BAM transcriptome harmonized CPTAC3 2cb3e951-6aca-4118-b3df-6d057e4b8d6a 1a5d156160d6da1989bee14aa71b620e { 'aliquot_tag': 'ALQ_f6018496', 'gdc_sample_type': 'Primary Tumor' } C3L-01053.Targeted.T C3L-01053 PDA Targeted Sequencing tumor CPT0123860009_1 CPT0123860009_1.CustomSelection.RP-1303.PDO-18786.bam 4166814508 BAM aligned CPTAC3 9203c7c3-ba09-475e-8fd8-ef87d8de2e88 cfaf212a05f9e6eedf4ba43e42c50547 { 'aliquot_tag': 'ALQ_ebb688c7', 'gdc_sample_type': 'Primary Tumor' } C3L-01053.Targeted.T.hg38 C3L-01053 PDA Targeted Sequencing tumor CPT0123860009_1 85a52aa4-9a42-4110-9983-0b9394f9b34d_targetedsequencing_gdc_realn.bam 5819188749 BAM harmonized CPTAC3 52a71ae9-cddb-47bb-addc-1eda6e714a3b d22f3ff72354bdec330d15de17bc2ece { 'aliquot_tag': 'ALQ_ebb688c7', 'gdc_sample_type': 'Primary Tumor' } @@ -5601,9 +6139,9 @@ C3L-01054.MethArray.Red.T C3L-01054 PDA Methylation Array tumor CPT0123990009 20 C3L-01054.miRNA-Seq.T C3L-01054 PDA miRNA-Seq tumor CPT0123990006 181108_UNC31-K00269_0162_AH255GBBXY_GTTTCG_S45_L004_R1_001.unaln.bam 186836891 BAM unaligned CPTAC3 709f007c-0e3c-4eb2-8f05-076f621cf56b 81133c1fcc3f06a4d296cd86acae9ac8 { 'aliquot_tag': 'ALQ_bf0dc0e2', 'gdc_sample_type': 'Primary Tumor' } C3L-01054.miRNA-Seq.T.hg38 C3L-01054 PDA miRNA-Seq tumor CPT0123990006 a08a48e3-77f1-41b7-b958-73a210dce709_mirnaseq_gdc_realn.bam 209682332 BAM harmonized CPTAC3 30a3b9f9-0b6c-49c3-abd6-47ea295a56d7 8c599614ca39c036a58cc380df0d57e0 { 'aliquot_tag': 'ALQ_bf0dc0e2', 'gdc_sample_type': 'Primary Tumor' } C3L-01054.RNA-Seq.chimeric.T.hg38 C3L-01054 PDA RNA-Seq tumor CPT0123990006 e492afcd-ac57-4f64-a6ba-bf14dde00848.rna_seq.chimeric.gdc_realn.bam 95092841 BAM chimeric harmonized CPTAC3 b04f1e73-d007-4faa-a05b-301f73a7bfb3 ec42361026f55b04b9313dfcbbd6eb4b { 'aliquot_tag': 'ALQ_bf0dc0e2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01054.RNA-Seq.genomic.T.hg38 C3L-01054 PDA RNA-Seq tumor CPT0123990006 e492afcd-ac57-4f64-a6ba-bf14dde00848.rna_seq.genomic.gdc_realn.bam 9726168176 BAM genomic harmonized CPTAC3 46bad620-9695-4af7-866c-b55c9ba53980 b543118be5bdebb9ac4b5febfdd10ada { 'aliquot_tag': 'ALQ_bf0dc0e2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01054.RNA-Seq.R1_L004.T C3L-01054 PDA RNA-Seq tumor CPT0123990006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGTACG_S16_L004_R1_001.fastq.gz 4313520630 FASTQ R1_L004 unaligned CPTAC3 3961ed21-b1d8-4af8-9383-6254a76b29bf d68d25d7eb25da341bf946b71fe922dd { 'aliquot_tag': 'ALQ_bf0dc0e2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01054.RNA-Seq.R2_L004.T C3L-01054 PDA RNA-Seq tumor CPT0123990006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGTACG_S16_L004_R2_001.fastq.gz 4704123667 FASTQ R2_L004 unaligned CPTAC3 29aeea9d-75f1-4897-82d9-de9d1d348270 d08ac772ad7d394613a5ffc3fb5345fb { 'aliquot_tag': 'ALQ_bf0dc0e2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01054.RNA-Seq.genomic.T.hg38 C3L-01054 PDA RNA-Seq tumor CPT0123990006 e492afcd-ac57-4f64-a6ba-bf14dde00848.rna_seq.genomic.gdc_realn.bam 9726168176 BAM genomic harmonized CPTAC3 50d79e4a-806a-40f9-b963-bc65ce09369d b543118be5bdebb9ac4b5febfdd10ada { 'aliquot_tag': 'ALQ_bf0dc0e2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01054.RNA-Seq.R1_L004.T C3L-01054 PDA RNA-Seq tumor CPT0123990006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGTACG_S16_L004_R1_001.fastq.gz 4313520630 FASTQ R1_L004 unaligned CPTAC3 3961ed21-b1d8-4af8-9383-6254a76b29bf d68d25d7eb25da341bf946b71fe922dd { 'aliquot_tag': 'ALQ_bf0dc0e2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01054.RNA-Seq.R2_L004.T C3L-01054 PDA RNA-Seq tumor CPT0123990006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGTACG_S16_L004_R2_001.fastq.gz 4704123667 FASTQ R2_L004 unaligned CPTAC3 29aeea9d-75f1-4897-82d9-de9d1d348270 d08ac772ad7d394613a5ffc3fb5345fb { 'aliquot_tag': 'ALQ_bf0dc0e2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01054.RNA-Seq.transcriptome.T.hg38 C3L-01054 PDA RNA-Seq tumor CPT0123990006 e492afcd-ac57-4f64-a6ba-bf14dde00848.rna_seq.transcriptome.gdc_realn.bam 13180705491 BAM transcriptome harmonized CPTAC3 b2b7e424-05c2-407a-824d-6d98d3800e66 9c0dafbaf76391d57d788a43bd0884b2 { 'aliquot_tag': 'ALQ_bf0dc0e2', 'gdc_sample_type': 'Primary Tumor' } C3L-01054.Targeted.T C3L-01054 PDA Targeted Sequencing tumor CPT0123990009_1 CPT0123990009_1.CustomSelection.RP-1303.PDO-18786.bam 4683548101 BAM aligned CPTAC3 f399b246-a8e2-4edb-8d82-a3213d724941 91462903ddebd6e11e9fa3eadb6a9f76 { 'aliquot_tag': 'ALQ_d154f8b0', 'gdc_sample_type': 'Primary Tumor' } C3L-01054.Targeted.T.hg38 C3L-01054 PDA Targeted Sequencing tumor CPT0123990009_1 41d322a3-5478-4793-a2a7-3886912a57d6_targetedsequencing_gdc_realn.bam 6739467167 BAM harmonized CPTAC3 2d005188-75b0-4c53-8c13-33a2897f2d79 86b613e9d0f2435a09759ee12fcbb8b0 { 'aliquot_tag': 'ALQ_d154f8b0', 'gdc_sample_type': 'Primary Tumor' } @@ -5626,9 +6164,9 @@ C3L-01061.MethArray.Red.T C3L-01061 GBM Methylation Array tumor CPT0217710011 20 C3L-01061.miRNA-Seq.T C3L-01061 GBM miRNA-Seq tumor CPT0217710014 190228_UNC32-K00270_0151_AHYLY3BBXX_GGTAGC_S24_L008_R1_001.unaln.bam 334003471 BAM unaligned CPTAC3 fde4a079-68f5-432d-affc-1e280fe18aad 161b10d476680f21f7ad40ff2b337c81 { 'aliquot_tag': 'ALQ_12fa50b', 'gdc_sample_type': 'Primary Tumor' } C3L-01061.miRNA-Seq.T.hg38 C3L-01061 GBM miRNA-Seq tumor CPT0217710014 096fc590-7c82-45a9-96f2-a5d1dbe37560_mirnaseq_gdc_realn.bam 381318696 BAM harmonized CPTAC3 9103f978-63c6-493a-b31f-ded6a6dfd383 1432cdebcdf3bed1464c6d91eee69d32 { 'aliquot_tag': 'ALQ_12fa50b', 'gdc_sample_type': 'Primary Tumor' } C3L-01061.RNA-Seq.chimeric.T.hg38 C3L-01061 GBM RNA-Seq tumor CPT0217710014 d793e185-2b3b-4780-a43e-f8cbb0543be8.rna_seq.chimeric.gdc_realn.bam 35738517 BAM chimeric harmonized CPTAC3 a8592d49-58bf-4320-90a7-458d0bc5b935 198df90d61c569abe72653df72404705 { 'aliquot_tag': 'ALQ_12fa50b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01061.RNA-Seq.genomic.T.hg38 C3L-01061 GBM RNA-Seq tumor CPT0217710014 d793e185-2b3b-4780-a43e-f8cbb0543be8.rna_seq.genomic.gdc_realn.bam 8748684141 BAM genomic harmonized CPTAC3 9203ad5d-b4ca-4df5-bb59-546572e52a55 63c741ccb0dbc6b7a89b3fdca8576ca5 { 'aliquot_tag': 'ALQ_12fa50b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01061.RNA-Seq.R1_L007.T C3L-01061 GBM RNA-Seq tumor CPT0217710014 180918_UNC31-K00269_0152_AHWNJTBBXX_ATGTCA_S10_L007_R1_001.fastq.gz 3999682712 FASTQ R1_L007 unaligned CPTAC3 ffb5df03-6c34-4b8f-90cb-eb3acb1f5c5e 1da0a5547bfcd230367c2d65eab19005 { 'aliquot_tag': 'ALQ_12fa50b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01061.RNA-Seq.R2_L007.T C3L-01061 GBM RNA-Seq tumor CPT0217710014 180918_UNC31-K00269_0152_AHWNJTBBXX_ATGTCA_S10_L007_R2_001.fastq.gz 4169173074 FASTQ R2_L007 unaligned CPTAC3 b6dd7a62-bb7b-4b6d-b9c8-f4058ce4609e 333748ef344708ab090aec0ea16f11ae { 'aliquot_tag': 'ALQ_12fa50b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01061.RNA-Seq.genomic.T.hg38 C3L-01061 GBM RNA-Seq tumor CPT0217710014 d793e185-2b3b-4780-a43e-f8cbb0543be8.rna_seq.genomic.gdc_realn.bam 8748684141 BAM genomic harmonized CPTAC3 70bbd906-338d-4e91-ab88-318a4c4870e3 63c741ccb0dbc6b7a89b3fdca8576ca5 { 'aliquot_tag': 'ALQ_12fa50b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01061.RNA-Seq.R1_L007.T C3L-01061 GBM RNA-Seq tumor CPT0217710014 180918_UNC31-K00269_0152_AHWNJTBBXX_ATGTCA_S10_L007_R1_001.fastq.gz 3999682712 FASTQ R1_L007 unaligned CPTAC3 ffb5df03-6c34-4b8f-90cb-eb3acb1f5c5e 1da0a5547bfcd230367c2d65eab19005 { 'aliquot_tag': 'ALQ_12fa50b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01061.RNA-Seq.R2_L007.T C3L-01061 GBM RNA-Seq tumor CPT0217710014 180918_UNC31-K00269_0152_AHWNJTBBXX_ATGTCA_S10_L007_R2_001.fastq.gz 4169173074 FASTQ R2_L007 unaligned CPTAC3 b6dd7a62-bb7b-4b6d-b9c8-f4058ce4609e 333748ef344708ab090aec0ea16f11ae { 'aliquot_tag': 'ALQ_12fa50b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-01061.RNA-Seq.transcriptome.T.hg38 C3L-01061 GBM RNA-Seq tumor CPT0217710014 d793e185-2b3b-4780-a43e-f8cbb0543be8.rna_seq.transcriptome.gdc_realn.bam 10506971302 BAM transcriptome harmonized CPTAC3 c4c2db40-0310-4908-8876-b7debce75ae6 2b18985e7c15e89a358dcb91f2bfd9d0 { 'aliquot_tag': 'ALQ_12fa50b', 'gdc_sample_type': 'Primary Tumor' } C3L-01061.WGS.N C3L-01061 GBM WGS blood_normal CPT0220160002 CPT0220160002.WholeGenome.RP-1303.bam 63410960366 BAM aligned CPTAC3 d8b8c72d-2e59-4139-9746-21a256a8b688 61fdf1def52a7151bca9aa591abda5e0 { 'aliquot_tag': 'ALQ_de06371f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01061.WGS.N.hg38 C3L-01061 GBM WGS blood_normal CPT0220160002 a33bef57-71c4-434e-8a4c-24b1ed593dd1_wgs_gdc_realn.bam 90566363330 BAM harmonized CPTAC3 5920915c-87e0-407e-a422-02d3f8803b68 0f9575294f2bffe621085626b90c3a11 { 'aliquot_tag': 'ALQ_de06371f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5642,13 +6180,16 @@ C3L-01064.MethArray.Green.T C3L-01064 UCEC Methylation Array tumor CPT0113430010 C3L-01064.MethArray.Red.T C3L-01064 UCEC Methylation Array tumor CPT0113430010 203219670147_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 1bcb2750-06d0-4b20-b9ba-135877abc877 45bd52288486e8f805c4661c007e4abd { 'aliquot_tag': 'ALQ_37d4580a', 'gdc_sample_type': 'Primary Tumor' } C3L-01064.miRNA-Seq.T C3L-01064 UCEC miRNA-Seq tumor CPT0113430007 190108_UNC31-K00269_0176_AHYGLVBBXX_CGTACG_S22_L002_R1_001.unaln.bam 264217578 BAM unaligned CPTAC3 05a6be11-eb40-49fb-9115-826064a9a5a6 e451c65b34491d3ac145d728ae990dfa { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor' } C3L-01064.miRNA-Seq.T.hg38 C3L-01064 UCEC miRNA-Seq tumor CPT0113430007 ff0aaa9f-d2ce-412c-b63b-d54b8e12183f_mirnaseq_gdc_realn.bam 282572116 BAM harmonized CPTAC3 8ac3cc6e-3457-48cb-a7d4-df087e11c418 576d3acaf0f270caecafa8e620f0c39e { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor' } -C3L-01064.RNA-Seq.chimeric.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 2e32679b-bfc5-4719-a0ba-6af8d587bea1.rna_seq.chimeric.gdc_realn.bam 29580020 BAM chimeric harmonized CPTAC3 652e27aa-09cf-48a9-a647-4669b8a28ed9 6c18ecdae856008c20cfbf8a12870a32 { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor' } -C3L-01064.RNA-Seq.genomic.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 2e32679b-bfc5-4719-a0ba-6af8d587bea1.rna_seq.genomic.gdc_realn.bam 9200158708 BAM genomic harmonized CPTAC3 24cf6970-bc45-4608-b47e-543d21504208 c2fff84ec95108242c28acb69cbd988f { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor' } -C3L-01064.RNA-Seq.R1_L005.T C3L-01064 UCEC RNA-Seq tumor CPT0113430007 181207_UNC32-K00270_0137_BH2LYCBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 3922335259 FASTQ R1_L005 unaligned CPTAC3 28100153-4171-4e1e-91d2-b0ad0baef05c 5d2a22eff38f2e1ea65e1498ef3538f2 { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor' } -C3L-01064.RNA-Seq.R1_.T C3L-01064 UCEC RNA-Seq tumor CPT0336780001 20210729_P3_D8_WB7988-Plate3_S44_R1_001.fastq.gz 6098681542 FASTQ R1_ unaligned CPTAC3 37632942-0a23-4d71-95cb-eabc0462d5b9 bb84c8d0357b2c23cdd88f6666cc404c { 'aliquot_tag': 'ALQ_96671a3e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01064.RNA-Seq.R2_L005.T C3L-01064 UCEC RNA-Seq tumor CPT0113430007 181207_UNC32-K00270_0137_BH2LYCBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4254448836 FASTQ R2_L005 unaligned CPTAC3 66b69b3d-3ab0-4b3f-834d-4413c1321080 5d42b0b30ef0631cdf4ffb66dcd56ab6 { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor' } -C3L-01064.RNA-Seq.R2_.T C3L-01064 UCEC RNA-Seq tumor CPT0336780001 20210729_P3_D8_WB7988-Plate3_S44_R2_001.fastq.gz 6297394584 FASTQ R2_ unaligned CPTAC3 93e373e6-d716-4957-bb10-f4c9fb53a2f0 b44d81e584514293d1d4390b4796615f { 'aliquot_tag': 'ALQ_96671a3e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01064.RNA-Seq.transcriptome.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 2e32679b-bfc5-4719-a0ba-6af8d587bea1.rna_seq.transcriptome.gdc_realn.bam 9725485090 BAM transcriptome harmonized CPTAC3 1cce8bdb-bef0-4f89-8c70-476202c0b4f5 e81466a55321d6c240440a28d6d80126 { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor' } +C3L-01064.RNA-Seq.chimeric.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 4fd9ac19-b4d8-47d7-832c-0043c2e18a19.rna_seq.chimeric.gdc_realn.bam 29571147 BAM chimeric harmonized CPTAC3 37a514c4-2cdb-44ce-9004-f09ff8d27ef3 7b49232e1094321450ce489b3603bbcd { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor' } +C3L-01064.RNA-Seq.chimeric.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0336780001 5ee66b2f-a4a5-43ae-8baa-b8f5024abed1.rna_seq.chimeric.gdc_realn.bam 302057748 BAM chimeric harmonized CPTAC3 527e2753-cd42-4b1a-95a6-559db32f4393 5bf539154e45077f6d3cd6e70f102e82 { 'aliquot_tag': 'ALQ_96671a3e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01064.RNA-Seq.genomic.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 4fd9ac19-b4d8-47d7-832c-0043c2e18a19.rna_seq.genomic.gdc_realn.bam 9201880615 BAM genomic harmonized CPTAC3 156bb8a8-0c9d-4d7d-8dac-d5c2f0932603 7f817b6b25d14f1be0fd94ee65b4ac29 { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor' } +C3L-01064.RNA-Seq.genomic.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0336780001 5ee66b2f-a4a5-43ae-8baa-b8f5024abed1.rna_seq.genomic.gdc_realn.bam 10877720163 BAM genomic harmonized CPTAC3 f1766caf-a5a6-417a-a4e7-fdf6ad21a1bd ba8f84309af5411c5aa22c79e71e454a { 'aliquot_tag': 'ALQ_96671a3e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01064.RNA-Seq.R1_L005.T C3L-01064 UCEC RNA-Seq tumor CPT0113430007 181207_UNC32-K00270_0137_BH2LYCBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 3922335259 FASTQ R1_L005 unaligned CPTAC3 28100153-4171-4e1e-91d2-b0ad0baef05c 5d2a22eff38f2e1ea65e1498ef3538f2 { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01064.RNA-Seq.R2_L005.T C3L-01064 UCEC RNA-Seq tumor CPT0113430007 181207_UNC32-K00270_0137_BH2LYCBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4254448836 FASTQ R2_L005 unaligned CPTAC3 66b69b3d-3ab0-4b3f-834d-4413c1321080 5d42b0b30ef0631cdf4ffb66dcd56ab6 { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01064.RNA-Seq.T C3L-01064 UCEC RNA-Seq tumor CPT0336780001 20210729_P3_D8_WB7988-Plate3_S44_R1_001.fastq.gz 6098681542 FASTQ unaligned CPTAC3 37632942-0a23-4d71-95cb-eabc0462d5b9 bb84c8d0357b2c23cdd88f6666cc404c +C3L-01064.RNA-Seq.T C3L-01064 UCEC RNA-Seq tumor CPT0336780001 20210729_P3_D8_WB7988-Plate3_S44_R2_001.fastq.gz 6297394584 FASTQ unaligned CPTAC3 93e373e6-d716-4957-bb10-f4c9fb53a2f0 b44d81e584514293d1d4390b4796615f +C3L-01064.RNA-Seq.transcriptome.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0113430007 4fd9ac19-b4d8-47d7-832c-0043c2e18a19.rna_seq.transcriptome.gdc_realn.bam 11062682128 BAM transcriptome harmonized CPTAC3 b0f3890e-03db-46c0-a227-559cea486ee4 ff0190488a935fa00a06ff87bafab542 { 'aliquot_tag': 'ALQ_b0abfce8', 'gdc_sample_type': 'Primary Tumor' } +C3L-01064.RNA-Seq.transcriptome.T.hg38 C3L-01064 UCEC RNA-Seq tumor CPT0336780001 5ee66b2f-a4a5-43ae-8baa-b8f5024abed1.rna_seq.transcriptome.gdc_realn.bam 4527275225 BAM transcriptome harmonized CPTAC3 6d1f29c6-bda1-417b-a401-38e900cc5c00 b32da0182a1843673dd79e20e32a4559 { 'aliquot_tag': 'ALQ_96671a3e', 'gdc_sample_type': 'Primary Tumor' } C3L-01064.WGS.N C3L-01064 UCEC WGS blood_normal CPT0114370002 CPT0114370002.WholeGenome.RP-1303.bam 55958152470 BAM aligned CPTAC3 6c503586-a88c-47d0-8741-d069acda8628 01b5c2494b48378538814bf2f0611583 { 'aliquot_tag': 'ALQ_ede3a091', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01064.WGS.N.hg38 C3L-01064 UCEC WGS blood_normal CPT0114370002 81727297-3a76-417c-8eef-b40e0a9619eb_wgs_gdc_realn.bam 80325381252 BAM harmonized CPTAC3 fdc4ca59-46ac-4d19-a43a-6221686dba54 0c1e578f2af968f8d0b6e891cf5cdd27 { 'aliquot_tag': 'ALQ_ede3a091', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01064.WGS.T C3L-01064 UCEC WGS tumor CPT0113430010 CPT0113430010.WholeGenome.RP-1303.bam 55036132160 BAM aligned CPTAC3 a6846445-701e-4826-a4d3-54792334d242 c46aedba383deffb9eedb39bac0b0534 { 'aliquot_tag': 'ALQ_37d4580a', 'gdc_sample_type': 'Primary Tumor' } @@ -5665,16 +6206,16 @@ C3L-01102.miRNA-Seq.A C3L-01102 CCRCC miRNA-Seq tissue_normal CPT0124090012 1901 C3L-01102.miRNA-Seq.A.hg38 C3L-01102 CCRCC miRNA-Seq tissue_normal CPT0124090012 bb0d457c-1c6d-41be-a228-deddeef11a82_mirnaseq_gdc_realn.bam 290050846 BAM harmonized CPTAC3 eea389f1-bfa5-4243-9a56-2a2982e19fec ca803c116c9f0b446f85c343fd0ceac6 { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01102.miRNA-Seq.T C3L-01102 CCRCC miRNA-Seq tumor CPT0124070010 190108_UNC31-K00269_0176_AHYGLVBBXX_CGGAAT_S37_L003_R1_001.unaln.bam 313437565 BAM unaligned CPTAC3 8dae7e2f-446b-4da1-b004-1af5f887e64e cf8a35db06f8746f7608e24ec6511b3d { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor' } C3L-01102.miRNA-Seq.T.hg38 C3L-01102 CCRCC miRNA-Seq tumor CPT0124070010 d2027cde-2dcb-4c5b-9614-35edbd6dc5e1_mirnaseq_gdc_realn.bam 346493685 BAM harmonized CPTAC3 5f06abfc-6744-4614-bea9-53d035e8c8be 007bf775ef9b35ff83db00fd7c7b6df0 { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01102.RNA-Seq.chimeric.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 f636ca23-c503-45f9-a076-f374c4e08288.rna_seq.chimeric.gdc_realn.bam 37013994 BAM chimeric harmonized CPTAC3 89fb6036-5c25-4b3d-8798-453c07847554 2f977104e92ea162ef0146b0381a3abd { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01102.RNA-Seq.chimeric.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 4537766a-a879-4afe-804c-a02ff0a3b037.rna_seq.chimeric.gdc_realn.bam 31999479 BAM chimeric harmonized CPTAC3 9ed11ba8-f8cd-4ced-bc84-a70e8463a9ba 6414862a84e6bf6ac13d8d9ca330f31b { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01102.RNA-Seq.genomic.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 f636ca23-c503-45f9-a076-f374c4e08288.rna_seq.genomic.gdc_realn.bam 8714127917 BAM genomic harmonized CPTAC3 e4b79f64-512f-4cb2-9165-ab067f31247e 644853b05d3bec39491d3c784a794938 { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01102.RNA-Seq.genomic.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 4537766a-a879-4afe-804c-a02ff0a3b037.rna_seq.genomic.gdc_realn.bam 9562029995 BAM genomic harmonized CPTAC3 1e0e14de-d15a-4e59-95a6-9e427358a8aa af0ab04343fa8625df26eb19c5f3e2bd { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01102.RNA-Seq.R1_L001.A C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3977448493 FASTQ R1_L001 unaligned CPTAC3 15c6d436-2531-4144-ad44-2d9cea6f4cfb ec4a053e2f5fea2fe0fb4cb63a4f0be1 { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01102.RNA-Seq.R1_L001.T C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L001_R1_001.fastq.gz 4114621517 FASTQ R1_L001 unaligned CPTAC3 5bab197d-6934-4b22-9e53-ccb4a5ac7f9c c60dda1109d94d38c77aec101af37109 { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01102.RNA-Seq.R2_L001.A C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4267594053 FASTQ R2_L001 unaligned CPTAC3 3928a34d-4197-4ab2-8070-59aa0efaa5c6 711f734e2aac3a968933a0af700ce73f { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01102.RNA-Seq.R2_L001.T C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L001_R2_001.fastq.gz 4436265795 FASTQ R2_L001 unaligned CPTAC3 ce713796-8952-4fb0-a57b-fb24597957d8 9ac83ee47093fd3103191f552a62a21d { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01102.RNA-Seq.transcriptome.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 f636ca23-c503-45f9-a076-f374c4e08288.rna_seq.transcriptome.gdc_realn.bam 9512252751 BAM transcriptome harmonized CPTAC3 02caad1f-03c2-4e64-bc9f-50ed472bcae4 33b5ee6be59a8cf1ed0eb5313eb96715 { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01102.RNA-Seq.transcriptome.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 4537766a-a879-4afe-804c-a02ff0a3b037.rna_seq.transcriptome.gdc_realn.bam 9444538488 BAM transcriptome harmonized CPTAC3 de85c541-aa86-4178-b299-c5ac2380a1c5 bd4376dc20aad729f64b1e3de9f98939 { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01102.RNA-Seq.chimeric.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 6dcd6cc5-d6ec-46b3-9960-a33cc31806ec.rna_seq.chimeric.gdc_realn.bam 36986673 BAM chimeric harmonized CPTAC3 8a17c6b8-540a-40ac-b7c6-51a8a51cfcfb e67cb50fd3152599200447bb85f8a5df { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01102.RNA-Seq.chimeric.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 aa9fc9a4-47de-4a41-a563-aba1c986f3b0.rna_seq.chimeric.gdc_realn.bam 31998066 BAM chimeric harmonized CPTAC3 f4578bdc-7e5c-4a33-9b8a-47a4fd8f2144 0a20d570593a773b557fa871294fee98 { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01102.RNA-Seq.genomic.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 6dcd6cc5-d6ec-46b3-9960-a33cc31806ec.rna_seq.genomic.gdc_realn.bam 8715175503 BAM genomic harmonized CPTAC3 8b6e137b-d0ff-4fd3-87c5-f903c58135ea 5eb15b5be9c90fd930b0698811948583 { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01102.RNA-Seq.genomic.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 aa9fc9a4-47de-4a41-a563-aba1c986f3b0.rna_seq.genomic.gdc_realn.bam 9563355114 BAM genomic harmonized CPTAC3 7f954625-cdac-402e-a356-a59b43fffc49 112ad668a756857e0464568f768e5a9f { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01102.RNA-Seq.R1_L001.A C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3977448493 FASTQ R1_L001 unaligned CPTAC3 15c6d436-2531-4144-ad44-2d9cea6f4cfb ec4a053e2f5fea2fe0fb4cb63a4f0be1 { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-01102.RNA-Seq.R1_L001.T C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L001_R1_001.fastq.gz 4114621517 FASTQ R1_L001 unaligned CPTAC3 5bab197d-6934-4b22-9e53-ccb4a5ac7f9c c60dda1109d94d38c77aec101af37109 { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01102.RNA-Seq.R2_L001.A C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4267594053 FASTQ R2_L001 unaligned CPTAC3 3928a34d-4197-4ab2-8070-59aa0efaa5c6 711f734e2aac3a968933a0af700ce73f { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-01102.RNA-Seq.R2_L001.T C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L001_R2_001.fastq.gz 4436265795 FASTQ R2_L001 unaligned CPTAC3 ce713796-8952-4fb0-a57b-fb24597957d8 9ac83ee47093fd3103191f552a62a21d { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01102.RNA-Seq.transcriptome.A.hg38 C3L-01102 CCRCC RNA-Seq tissue_normal CPT0124090012 6dcd6cc5-d6ec-46b3-9960-a33cc31806ec.rna_seq.transcriptome.gdc_realn.bam 10909384897 BAM transcriptome harmonized CPTAC3 2378848c-e766-4c48-baab-e85a8a27f112 0c5631a283ded16e2c74a4b0533bd557 { 'aliquot_tag': 'ALQ_43d35afc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01102.RNA-Seq.transcriptome.T.hg38 C3L-01102 CCRCC RNA-Seq tumor CPT0124070010 aa9fc9a4-47de-4a41-a563-aba1c986f3b0.rna_seq.transcriptome.gdc_realn.bam 10697134943 BAM transcriptome harmonized CPTAC3 01223823-0396-4a60-86ef-18a18ba24473 95b1201c1fa970c54d99878f0335954a { 'aliquot_tag': 'ALQ_12ed85b1', 'gdc_sample_type': 'Primary Tumor' } C3L-01102.WGS.A C3L-01102 CCRCC WGS tissue_normal CPT0124090006 CPT0124090006.WholeGenome.RP-1303.bam 64575505733 BAM aligned CPTAC3 647894e1-c594-478b-8e26-9b7cafa182a4 cce30a87dd9d543630c1a7b7f9b84009 { 'aliquot_tag': 'ALQ_5da5afa4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01102.WGS.A.hg38 C3L-01102 CCRCC WGS tissue_normal CPT0124090006 924bf40d-ea3b-4aa8-8197-a3a373492211_wgs_gdc_realn.bam 94064630023 BAM harmonized CPTAC3 0b5bdcfa-a0dc-4027-9e8a-245800a46269 485f8507fc4874f2ee0601c27237d9d5 { 'aliquot_tag': 'ALQ_5da5afa4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01102.WGS.N C3L-01102 CCRCC WGS blood_normal CPT0124930002 CPT0124930002.WholeGenome.RP-1303.bam 52285725912 BAM aligned CPTAC3 7d6e38d1-493f-4391-a730-2a86d99d958d 14a5b852036e418d8d603499da714672 { 'aliquot_tag': 'ALQ_377722d4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5695,16 +6236,16 @@ C3L-01106.miRNA-Seq.A C3L-01106 CCRCC miRNA-Seq tissue_normal CPT0127560009 1901 C3L-01106.miRNA-Seq.A.hg38 C3L-01106 CCRCC miRNA-Seq tissue_normal CPT0127560009 e6f73fe8-adf7-4ea1-a3c5-1e3cee8758f9_mirnaseq_gdc_realn.bam 309292566 BAM harmonized CPTAC3 81732bf0-44c2-4be3-ae2f-53d254c0c3ea a3d764bbd90c3d46d259f1d4310a321f { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01106.miRNA-Seq.T C3L-01106 CCRCC miRNA-Seq tumor CPT0127540010 190108_UNC31-K00269_0176_AHYGLVBBXX_GTCCGC_S18_L004_R1_001.unaln.bam 211791575 BAM unaligned CPTAC3 100cdc4f-4148-4f16-bcc1-d18b1c256fa1 3555e524b5ca404327bf96c3d16007e9 { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor' } C3L-01106.miRNA-Seq.T.hg38 C3L-01106 CCRCC miRNA-Seq tumor CPT0127540010 9ae51e96-97ba-4091-a19a-1f4b6a409753_mirnaseq_gdc_realn.bam 229601716 BAM harmonized CPTAC3 c0d79f69-a4c3-4548-9271-23f49a89dbeb 56ad7f5ea224f8c858b7889f2ed10378 { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01106.RNA-Seq.chimeric.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 d6b978b6-8c64-426c-ac8f-13b29f43956d.rna_seq.chimeric.gdc_realn.bam 242344927 BAM chimeric harmonized CPTAC3 933b91c9-04d0-4f6c-b195-30106a9e13c6 638b17dfba5a4814b64cdb359548add2 { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01106.RNA-Seq.chimeric.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 68ad1063-cd81-4828-a9ff-30563e811fdb.rna_seq.chimeric.gdc_realn.bam 149311739 BAM chimeric harmonized CPTAC3 707662bd-cf49-4c50-98b8-1547f3363697 de6cee4d6e327e55fe09cf2ece37c562 { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01106.RNA-Seq.genomic.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 d6b978b6-8c64-426c-ac8f-13b29f43956d.rna_seq.genomic.gdc_realn.bam 8752799083 BAM genomic harmonized CPTAC3 4b5c4d0d-9f9b-468a-a99b-4e3125f7f43e 349646d5a9dd7eca218e60bef480f308 { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01106.RNA-Seq.genomic.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 68ad1063-cd81-4828-a9ff-30563e811fdb.rna_seq.genomic.gdc_realn.bam 8969333040 BAM genomic harmonized CPTAC3 75444276-9516-4287-a395-ef68ae34bff1 105ff3c5779da8cb9e75c384b76afa8f { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01106.RNA-Seq.R1_L004.A C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L004_R1_001.fastq.gz 3645256312 FASTQ R1_L004 unaligned CPTAC3 1f45622f-4621-4a65-a293-39d333d45578 114e174595490dac74ffd12cc27b8a62 { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01106.RNA-Seq.R1_L005.T C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 190115_UNC31-K00269_0179_BH357YBBXY_GTGAAA_S14_L005_R1_001.fastq.gz 3719343077 FASTQ R1_L005 unaligned CPTAC3 87d37919-909f-4599-8b5a-fa783c56971e c39a6288b1128abfd597319e8ba21e9a { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01106.RNA-Seq.R2_L004.A C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L004_R2_001.fastq.gz 4142286117 FASTQ R2_L004 unaligned CPTAC3 6142a971-a49e-4090-a077-a8e5d34727a6 443332cfdaf02b01b9f6e266b55171e9 { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01106.RNA-Seq.R2_L005.T C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 190115_UNC31-K00269_0179_BH357YBBXY_GTGAAA_S14_L005_R2_001.fastq.gz 3839056192 FASTQ R2_L005 unaligned CPTAC3 466ffb31-b95e-47d9-b0b8-a4dfbfe0ed51 77142614cb9c7bba97b233ac937cac16 { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01106.RNA-Seq.transcriptome.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 d6b978b6-8c64-426c-ac8f-13b29f43956d.rna_seq.transcriptome.gdc_realn.bam 8331071368 BAM transcriptome harmonized CPTAC3 24763b08-dea2-4763-8aab-3fb40d0eb8ae 2b3ce559710b4558e1bd2b132c4c3be3 { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01106.RNA-Seq.transcriptome.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 68ad1063-cd81-4828-a9ff-30563e811fdb.rna_seq.transcriptome.gdc_realn.bam 8931974641 BAM transcriptome harmonized CPTAC3 d780da4a-0fef-403d-92bb-c6472e5ee95d 5be923193eb72c304e806a35a0c9f8e6 { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01106.RNA-Seq.chimeric.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 868a2bc8-4c9d-4ff8-b8a7-158b960323be.rna_seq.chimeric.gdc_realn.bam 242326235 BAM chimeric harmonized CPTAC3 e259ae29-f95f-4154-8824-05ccdf8ead9e 4f623bc38f41d6bbb93caa88c7361560 { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01106.RNA-Seq.chimeric.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 1c827b37-3e39-4f79-8e8d-b8d51e731e66.rna_seq.chimeric.gdc_realn.bam 149274133 BAM chimeric harmonized CPTAC3 5bbe0022-c4b4-4b34-968c-b28051503c7f 901b38d24bc5b421c076ab655ff177c3 { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01106.RNA-Seq.genomic.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 868a2bc8-4c9d-4ff8-b8a7-158b960323be.rna_seq.genomic.gdc_realn.bam 8753843433 BAM genomic harmonized CPTAC3 d4a845d5-cd90-4bdf-80c0-6b6c9cdc20dc efc246265482f0d6e07c0657d96757f2 { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01106.RNA-Seq.genomic.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 1c827b37-3e39-4f79-8e8d-b8d51e731e66.rna_seq.genomic.gdc_realn.bam 8970359014 BAM genomic harmonized CPTAC3 257fe451-6068-4690-a269-877ddc9fa67c fb8f4b4e6576b1de4f1dfe7264dc4002 { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01106.RNA-Seq.R1_L004.A C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L004_R1_001.fastq.gz 3645256312 FASTQ R1_L004 unaligned CPTAC3 1f45622f-4621-4a65-a293-39d333d45578 114e174595490dac74ffd12cc27b8a62 { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-01106.RNA-Seq.R1_L005.T C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 190115_UNC31-K00269_0179_BH357YBBXY_GTGAAA_S14_L005_R1_001.fastq.gz 3719343077 FASTQ R1_L005 unaligned CPTAC3 87d37919-909f-4599-8b5a-fa783c56971e c39a6288b1128abfd597319e8ba21e9a { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01106.RNA-Seq.R2_L004.A C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L004_R2_001.fastq.gz 4142286117 FASTQ R2_L004 unaligned CPTAC3 6142a971-a49e-4090-a077-a8e5d34727a6 443332cfdaf02b01b9f6e266b55171e9 { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-01106.RNA-Seq.R2_L005.T C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 190115_UNC31-K00269_0179_BH357YBBXY_GTGAAA_S14_L005_R2_001.fastq.gz 3839056192 FASTQ R2_L005 unaligned CPTAC3 466ffb31-b95e-47d9-b0b8-a4dfbfe0ed51 77142614cb9c7bba97b233ac937cac16 { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01106.RNA-Seq.transcriptome.A.hg38 C3L-01106 CCRCC RNA-Seq tissue_normal CPT0127560009 868a2bc8-4c9d-4ff8-b8a7-158b960323be.rna_seq.transcriptome.gdc_realn.bam 9510027754 BAM transcriptome harmonized CPTAC3 5663bb71-a5a7-45af-bf65-b15fce4b9e78 08d449ca473d807d706cfb87bcc6088a { 'aliquot_tag': 'ALQ_2e6faeca', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01106.RNA-Seq.transcriptome.T.hg38 C3L-01106 CCRCC RNA-Seq tumor CPT0127540010 1c827b37-3e39-4f79-8e8d-b8d51e731e66.rna_seq.transcriptome.gdc_realn.bam 10102732524 BAM transcriptome harmonized CPTAC3 5f741bab-2c68-47c0-a871-ba5e4e50046a f6c7b3a2c1673b4b2f25c82d9aba9528 { 'aliquot_tag': 'ALQ_3468744f', 'gdc_sample_type': 'Primary Tumor' } C3L-01106.WGS.A C3L-01106 CCRCC WGS tissue_normal CPT0127560006 CPT0127560006.WholeGenome.RP-1303.bam 63750521126 BAM aligned CPTAC3 0629d538-5b82-4639-9b77-e6e581fea8a9 cd0d9187de5f645a00120b3183967629 { 'aliquot_tag': 'ALQ_bed0b35b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01106.WGS.A.hg38 C3L-01106 CCRCC WGS tissue_normal CPT0127560006 86515b8e-a388-4458-9ffd-0029a990e22c_wgs_gdc_realn.bam 92913603357 BAM harmonized CPTAC3 a53a8442-903b-4713-895f-9063244469ad 5779d8ea7ea55bcb2546e09f502999ae { 'aliquot_tag': 'ALQ_bed0b35b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01106.WGS.N C3L-01106 CCRCC WGS blood_normal CPT0128590002 CPT0128590002.WholeGenome.RP-1303.bam 100045212935 BAM aligned CPTAC3 c6d37ac1-316c-45db-aad5-c344e23aa741 d53c93eec2b85ce852ed95b12b13281b { 'aliquot_tag': 'ALQ_cda5907a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5725,16 +6266,16 @@ C3L-01107.miRNA-Seq.A C3L-01107 CCRCC miRNA-Seq tissue_normal CPT0128220009 1901 C3L-01107.miRNA-Seq.A.hg38 C3L-01107 CCRCC miRNA-Seq tissue_normal CPT0128220009 b7e341b4-3318-4ebd-a8c6-689d7bef03c4_mirnaseq_gdc_realn.bam 224872362 BAM harmonized CPTAC3 d79a6ea7-8091-4dac-976d-a379f6838984 353e6f3319b1632a79c314a5efbd08e2 { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01107.miRNA-Seq.T C3L-01107 CCRCC miRNA-Seq tumor CPT0128200009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGAAA_S19_L004_R1_001.unaln.bam 299467308 BAM unaligned CPTAC3 edd94b7d-368c-4ff5-9dc8-28fd14b2e2f6 8d59ef71f5efdd4038dfaac4933ba4bb { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor' } C3L-01107.miRNA-Seq.T.hg38 C3L-01107 CCRCC miRNA-Seq tumor CPT0128200009 bf6f1cc2-d9d6-4476-8e44-57bc52f22fb6_mirnaseq_gdc_realn.bam 327583224 BAM harmonized CPTAC3 d610852e-9f88-4501-9c93-b907d829b59d 488aeddbcbe6666ff37635264e0d4cf5 { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01107.RNA-Seq.chimeric.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 6266daf6-897f-4442-b27b-ec2da394640b.rna_seq.chimeric.gdc_realn.bam 178469258 BAM chimeric harmonized CPTAC3 1581c8ac-7ba2-44da-b1be-e7ef6704fd38 550b036a097f597dbb7a31b91e55ca17 { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01107.RNA-Seq.chimeric.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 72920b98-e109-4e79-beac-f5532ab2f28f.rna_seq.chimeric.gdc_realn.bam 299459643 BAM chimeric harmonized CPTAC3 241c07eb-8eeb-4108-9e94-ef7d7a31c86c 0d2537d07e1cd80c6c121d22e949540c { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01107.RNA-Seq.genomic.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 6266daf6-897f-4442-b27b-ec2da394640b.rna_seq.genomic.gdc_realn.bam 9555914941 BAM genomic harmonized CPTAC3 a78220cb-c922-45a6-9b1f-96bfefc835f7 217f3390e2f285e794a2cdd9e3d3c45f { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01107.RNA-Seq.genomic.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 72920b98-e109-4e79-beac-f5532ab2f28f.rna_seq.genomic.gdc_realn.bam 9794617878 BAM genomic harmonized CPTAC3 2aff4c32-b7ed-4c8f-992b-1c5acad3855a 05ff414f34fd7b9dc266f108208c5d59 { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01107.RNA-Seq.R1_L004.A C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L004_R1_001.fastq.gz 4056775217 FASTQ R1_L004 unaligned CPTAC3 f3dc1ccc-d860-4956-9913-ffe18bb92a04 1fbb996178e9a011d2a82c5dd1c3476f { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01107.RNA-Seq.R1_L005.T C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 190115_UNC31-K00269_0179_BH357YBBXY_GTGGCC_S16_L005_R1_001.fastq.gz 4285834213 FASTQ R1_L005 unaligned CPTAC3 32bb4c82-91e8-486a-aef8-abc7dba1ead8 166a102e34b7b04ff78666b1cb7d9418 { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01107.RNA-Seq.R2_L004.A C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L004_R2_001.fastq.gz 4406269700 FASTQ R2_L004 unaligned CPTAC3 20f6261f-79e8-44ad-8b11-38fafb6099c0 5894100c33d5006a4abd7e52b9c26a1a { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01107.RNA-Seq.R2_L005.T C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 190115_UNC31-K00269_0179_BH357YBBXY_GTGGCC_S16_L005_R2_001.fastq.gz 4794507671 FASTQ R2_L005 unaligned CPTAC3 fe116b10-f7df-46ac-8bc5-6d74f714a258 e3703894aa8f09856ca27fbd654b1b91 { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01107.RNA-Seq.transcriptome.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 6266daf6-897f-4442-b27b-ec2da394640b.rna_seq.transcriptome.gdc_realn.bam 8577728489 BAM transcriptome harmonized CPTAC3 4f0861de-c20d-402b-a4c9-c65ee9c0c343 b7b06d561954136447b49e0af5797a1d { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01107.RNA-Seq.transcriptome.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 72920b98-e109-4e79-beac-f5532ab2f28f.rna_seq.transcriptome.gdc_realn.bam 8537737569 BAM transcriptome harmonized CPTAC3 895f9902-fcd0-4a9d-9bcf-2cdb60566a19 f286b601a1b42a2437647d0baba93e50 { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01107.RNA-Seq.chimeric.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 0318827f-9da0-474c-b7e2-23ffa97c6308.rna_seq.chimeric.gdc_realn.bam 178455688 BAM chimeric harmonized CPTAC3 0660560e-60e4-4a2e-8da8-9ea4adabde17 91bff53ab8bfa3914efcda89b7b1bfd3 { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01107.RNA-Seq.chimeric.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 1b41b2cd-ac25-4e4d-9a06-0c78f875848d.rna_seq.chimeric.gdc_realn.bam 299457948 BAM chimeric harmonized CPTAC3 a85f52c8-d02d-4f3e-9b86-1bb6a693722f 3a7af14b56ee5b803decc574dae4abca { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01107.RNA-Seq.genomic.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 0318827f-9da0-474c-b7e2-23ffa97c6308.rna_seq.genomic.gdc_realn.bam 9556818666 BAM genomic harmonized CPTAC3 31880cb7-f309-4803-8bfd-70e46e9a64f9 21c08546c54f3ce908203692c604a1b2 { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01107.RNA-Seq.genomic.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 1b41b2cd-ac25-4e4d-9a06-0c78f875848d.rna_seq.genomic.gdc_realn.bam 9795322559 BAM genomic harmonized CPTAC3 1e24632e-0a4e-48a8-8e1b-713a0f10f022 8a63fecdf3bb409f7045a4d513e08166 { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01107.RNA-Seq.R1_L004.A C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L004_R1_001.fastq.gz 4056775217 FASTQ R1_L004 unaligned CPTAC3 f3dc1ccc-d860-4956-9913-ffe18bb92a04 1fbb996178e9a011d2a82c5dd1c3476f { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-01107.RNA-Seq.R1_L005.T C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 190115_UNC31-K00269_0179_BH357YBBXY_GTGGCC_S16_L005_R1_001.fastq.gz 4285834213 FASTQ R1_L005 unaligned CPTAC3 32bb4c82-91e8-486a-aef8-abc7dba1ead8 166a102e34b7b04ff78666b1cb7d9418 { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01107.RNA-Seq.R2_L004.A C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L004_R2_001.fastq.gz 4406269700 FASTQ R2_L004 unaligned CPTAC3 20f6261f-79e8-44ad-8b11-38fafb6099c0 5894100c33d5006a4abd7e52b9c26a1a { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-01107.RNA-Seq.R2_L005.T C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 190115_UNC31-K00269_0179_BH357YBBXY_GTGGCC_S16_L005_R2_001.fastq.gz 4794507671 FASTQ R2_L005 unaligned CPTAC3 fe116b10-f7df-46ac-8bc5-6d74f714a258 e3703894aa8f09856ca27fbd654b1b91 { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01107.RNA-Seq.transcriptome.A.hg38 C3L-01107 CCRCC RNA-Seq tissue_normal CPT0128220009 0318827f-9da0-474c-b7e2-23ffa97c6308.rna_seq.transcriptome.gdc_realn.bam 9714805768 BAM transcriptome harmonized CPTAC3 d933f4a8-fea7-48bc-88c4-624200cf703d d3558c5449502eeb46ea760007e139d5 { 'aliquot_tag': 'ALQ_30a2485b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01107.RNA-Seq.transcriptome.T.hg38 C3L-01107 CCRCC RNA-Seq tumor CPT0128200009 1b41b2cd-ac25-4e4d-9a06-0c78f875848d.rna_seq.transcriptome.gdc_realn.bam 9653012184 BAM transcriptome harmonized CPTAC3 f877c0d2-8cee-4c9f-b55d-a43c5c194f18 8369ce524113993d56ad01d579a2a41d { 'aliquot_tag': 'ALQ_4a621b3b', 'gdc_sample_type': 'Primary Tumor' } C3L-01107.WGS.A C3L-01107 CCRCC WGS tissue_normal CPT0128220006 CPT0128220006.WholeGenome.RP-1303.bam 57950576185 BAM aligned CPTAC3 0ac806f4-7541-4a2e-a997-0a8c013c956e c09605546f14800b17c09c3ae450a33a { 'aliquot_tag': 'ALQ_a01d55ca', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01107.WGS.A.hg38 C3L-01107 CCRCC WGS tissue_normal CPT0128220006 9484c82f-51d6-4a28-91ed-c2cddd51d56f_wgs_gdc_realn.bam 83482721157 BAM harmonized CPTAC3 bea0d5f9-81dc-4ceb-a1ba-de66a4592802 4d5d07f61f80716a2a87160e5b8cf1ed { 'aliquot_tag': 'ALQ_a01d55ca', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01107.WGS.N C3L-01107 CCRCC WGS blood_normal CPT0128600002 CPT0128600002.WholeGenome.RP-1303.bam 59861252316 BAM aligned CPTAC3 e7c83446-9419-4ab6-a3ad-a90d0f66dab8 6ce8062d5d7bd46ca0cbe28d42b34bf0 { 'aliquot_tag': 'ALQ_462180a5', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5752,9 +6293,9 @@ C3L-01124.MethArray.Red.A C3L-01124 PDA Methylation Array tissue_normal CPT02182 C3L-01124.miRNA-Seq.T C3L-01124 PDA miRNA-Seq tumor CPT0218200010 190712_UNC32-K00270_0192_BH7HL3BBXY_CATTTT_S11_L004_R1_001.unaln.bam 237728064 BAM unaligned CPTAC3 083f9e15-2e46-464c-a823-e0ee4801319b 9c922e952b0b7a19ca6252a12eb1f127 { 'aliquot_tag': 'ALQ_9da7a9f8', 'gdc_sample_type': 'Primary Tumor' } C3L-01124.miRNA-Seq.T.hg38 C3L-01124 PDA miRNA-Seq tumor CPT0218200010 9e9a91c6-6afb-41e2-856a-b8da7f41b36d_mirnaseq_gdc_realn.bam 268526312 BAM harmonized CPTAC3 6dec9110-8399-4520-b914-92abe16c6c99 9a60e1e985a376777b0c9bc80d198e8b { 'aliquot_tag': 'ALQ_9da7a9f8', 'gdc_sample_type': 'Primary Tumor' } C3L-01124.RNA-Seq.chimeric.T.hg38 C3L-01124 PDA RNA-Seq tumor CPT0218200010 037d4b7e-4721-42d1-8a21-e99c6007ca15.rna_seq.chimeric.gdc_realn.bam 30521533 BAM chimeric harmonized CPTAC3 f898eec7-152d-4fcf-8a0c-88ae631ce6ea bccb472ba13bda56a5c24eb77a647ee9 { 'aliquot_tag': 'ALQ_9da7a9f8', 'gdc_sample_type': 'Primary Tumor' } -C3L-01124.RNA-Seq.genomic.T.hg38 C3L-01124 PDA RNA-Seq tumor CPT0218200010 037d4b7e-4721-42d1-8a21-e99c6007ca15.rna_seq.genomic.gdc_realn.bam 7761088890 BAM genomic harmonized CPTAC3 9a58436b-a6e8-4085-931f-a5184edfe64e e98efd43d1ad8972257d6e08d8fedc72 { 'aliquot_tag': 'ALQ_9da7a9f8', 'gdc_sample_type': 'Primary Tumor' } -C3L-01124.RNA-Seq.R1_L001.T C3L-01124 PDA RNA-Seq tumor CPT0218200010 190621_UNC32-K00270_0185_BH7G72BBXY_CTGCTTCC-GATAGATC_S4_L001_R1_001.fastq.gz 3634837869 FASTQ R1_L001 unaligned CPTAC3 34e81818-13cd-4293-8928-7b2ccf25029e f30cd0593ca08a1bb79312a919c99385 { 'aliquot_tag': 'ALQ_9da7a9f8', 'gdc_sample_type': 'Primary Tumor' } -C3L-01124.RNA-Seq.R2_L001.T C3L-01124 PDA RNA-Seq tumor CPT0218200010 190621_UNC32-K00270_0185_BH7G72BBXY_CTGCTTCC-GATAGATC_S4_L001_R2_001.fastq.gz 3980733627 FASTQ R2_L001 unaligned CPTAC3 96f94f29-ca45-4603-98e8-22d9374e57c7 b40d8e58dadd51b51df3d67c5d4b1e70 { 'aliquot_tag': 'ALQ_9da7a9f8', 'gdc_sample_type': 'Primary Tumor' } +C3L-01124.RNA-Seq.genomic.T.hg38 C3L-01124 PDA RNA-Seq tumor CPT0218200010 037d4b7e-4721-42d1-8a21-e99c6007ca15.rna_seq.genomic.gdc_realn.bam 7761088890 BAM genomic harmonized CPTAC3 4703d5af-4821-4cf4-a0a1-e475d1075f84 e98efd43d1ad8972257d6e08d8fedc72 { 'aliquot_tag': 'ALQ_9da7a9f8', 'gdc_sample_type': 'Primary Tumor' } +C3L-01124.RNA-Seq.R1_L001.T C3L-01124 PDA RNA-Seq tumor CPT0218200010 190621_UNC32-K00270_0185_BH7G72BBXY_CTGCTTCC-GATAGATC_S4_L001_R1_001.fastq.gz 3634837869 FASTQ R1_L001 unaligned CPTAC3 34e81818-13cd-4293-8928-7b2ccf25029e f30cd0593ca08a1bb79312a919c99385 { 'aliquot_tag': 'ALQ_9da7a9f8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01124.RNA-Seq.R2_L001.T C3L-01124 PDA RNA-Seq tumor CPT0218200010 190621_UNC32-K00270_0185_BH7G72BBXY_CTGCTTCC-GATAGATC_S4_L001_R2_001.fastq.gz 3980733627 FASTQ R2_L001 unaligned CPTAC3 96f94f29-ca45-4603-98e8-22d9374e57c7 b40d8e58dadd51b51df3d67c5d4b1e70 { 'aliquot_tag': 'ALQ_9da7a9f8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-01124.RNA-Seq.transcriptome.T.hg38 C3L-01124 PDA RNA-Seq tumor CPT0218200010 037d4b7e-4721-42d1-8a21-e99c6007ca15.rna_seq.transcriptome.gdc_realn.bam 9465846694 BAM transcriptome harmonized CPTAC3 81f74fa9-b630-4803-a0fa-1b7645958820 d1c1aa84083583abf425806af5dbe2a6 { 'aliquot_tag': 'ALQ_9da7a9f8', 'gdc_sample_type': 'Primary Tumor' } C3L-01124.WGS.N C3L-01124 PDA WGS blood_normal CPT0220240002 CPT0220240002.WholeGenome.RP-1303.bam 66538715820 BAM aligned CPTAC3 b81ac938-96bc-4ef4-b90c-c79c20ab61dc d541cd218b80e5cd840b0c78dda5f4b5 { 'aliquot_tag': 'ALQ_225216d1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01124.WGS.N.hg38 C3L-01124 PDA WGS blood_normal CPT0220240002 8b168954-0caa-4c8b-8c1f-0521f4da89ec_wgs_gdc_realn.bam 95701406517 BAM harmonized CPTAC3 1fbe8af1-8b73-4ad2-99eb-43fb406d4331 1413e11fcb3546698ec8fda545457868 { 'aliquot_tag': 'ALQ_225216d1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5776,16 +6317,19 @@ C3L-01138.miRNA-Seq.T C3L-01138 HNSCC miRNA-Seq tumor CPT0199700009 190228_UNC32 C3L-01138.miRNA-Seq.T.hg38 C3L-01138 HNSCC miRNA-Seq tumor CPT0199700009 c5e57c44-c650-466a-a82f-e42445cfd4c0_mirnaseq_gdc_realn.bam 319207444 BAM harmonized CPTAC3 d41b9b5f-973f-4a69-abff-147e4c719703 4cee68c414676cc995faf8795a9fab01 { 'aliquot_tag': 'ALQ_e1b29d6a', 'gdc_sample_type': 'Primary Tumor' } C3L-01138.RNA-Seq.chimeric.A.hg38 C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 831aaf71-5956-4783-93df-c4ac628ce7a5.rna_seq.chimeric.gdc_realn.bam 175019185 BAM chimeric harmonized CPTAC3 50e3f844-0234-4b28-b16b-13178fd6336f a538d8d08a410f5c2af439029ad447c0 { 'aliquot_tag': 'ALQ_dcd2b4da', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01138.RNA-Seq.chimeric.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 6ca74d98-86ba-43a9-bd85-f8a097202ce9.rna_seq.chimeric.gdc_realn.bam 364114353 BAM chimeric harmonized CPTAC3 e7f4aaa7-e8b2-49ab-943f-64566063607a 2e2881fb7a4d3f7a8440ad1fb2735e82 { 'aliquot_tag': 'ALQ_e1b29d6a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01138.RNA-Seq.genomic.A.hg38 C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 831aaf71-5956-4783-93df-c4ac628ce7a5.rna_seq.genomic.gdc_realn.bam 8212393467 BAM genomic harmonized CPTAC3 8ba4cdc7-db15-41bb-a8ed-530a71d5e8c2 33584fb87768ac36f54688a676c38709 { 'aliquot_tag': 'ALQ_dcd2b4da', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01138.RNA-Seq.genomic.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 6ca74d98-86ba-43a9-bd85-f8a097202ce9.rna_seq.genomic.gdc_realn.bam 9048925675 BAM genomic harmonized CPTAC3 c172ce57-23e8-4852-a563-0fbc7e46c9b4 44766b3bc7a377f272e17b0417267d4e { 'aliquot_tag': 'ALQ_e1b29d6a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01138.RNA-Seq.R1_L002.T C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 190405_UNC32-K00270_0161_BH55FNBBXY_TGACCA_S5_L002_R1_001.fastq.gz 4269875054 FASTQ R1_L002 unaligned CPTAC3 87b6c3bd-006e-4541-8788-e6fe36fb4bc0 9e46cfefd601e26d91016c1d87b8a49d { 'aliquot_tag': 'ALQ_e1b29d6a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01138.RNA-Seq.R1_L007.A C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L007_R1_001.fastq.gz 3671894922 FASTQ R1_L007 unaligned CPTAC3 7385e76e-77e3-42c8-bffa-6512ac6f1c7f e2b1df6b8b388012fc49ca7f2972f9c8 { 'aliquot_tag': 'ALQ_dcd2b4da', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01138.RNA-Seq.R1_.T C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 20210714_P1_A10_WB7988_plate1_S10_R1_001.fastq.gz 3262539991 FASTQ R1_ unaligned CPTAC3 7ac9df57-5261-4e4d-97d0-f89ebe26e2bc 727dfae420e8bef9a73295f6dbba4740 { 'aliquot_tag': 'ALQ_8cb27779', 'gdc_sample_type': 'Primary Tumor' } -C3L-01138.RNA-Seq.R2_L002.T C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 190405_UNC32-K00270_0161_BH55FNBBXY_TGACCA_S5_L002_R2_001.fastq.gz 4674041813 FASTQ R2_L002 unaligned CPTAC3 f88801c9-0c9b-4504-8766-7fb28da9af70 94e855fce1170ccef102b33f749782c4 { 'aliquot_tag': 'ALQ_e1b29d6a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01138.RNA-Seq.R2_L007.A C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L007_R2_001.fastq.gz 4034713163 FASTQ R2_L007 unaligned CPTAC3 274a4d30-85cd-45be-a44a-92b9bbad39e4 24ef7e84f816653a899756e2d6cd2149 { 'aliquot_tag': 'ALQ_dcd2b4da', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01138.RNA-Seq.R2_.T C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 20210714_P1_A10_WB7988_plate1_S10_R2_001.fastq.gz 3525874971 FASTQ R2_ unaligned CPTAC3 44574794-ab0a-4ff0-b924-2e211433a67e a704da6730f1d1d68de240a690b92cbb { 'aliquot_tag': 'ALQ_8cb27779', 'gdc_sample_type': 'Primary Tumor' } +C3L-01138.RNA-Seq.chimeric.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 719dd013-5dcc-4da9-8305-90924f68c106.rna_seq.chimeric.gdc_realn.bam 54851581 BAM chimeric harmonized CPTAC3 09743d32-814c-4199-a7ef-c9377929d734 e0e1cbd42b38fffe9ce7b5471827c7c0 { 'aliquot_tag': 'ALQ_8cb27779', 'gdc_sample_type': 'Primary Tumor' } +C3L-01138.RNA-Seq.genomic.A.hg38 C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 831aaf71-5956-4783-93df-c4ac628ce7a5.rna_seq.genomic.gdc_realn.bam 8212393467 BAM genomic harmonized CPTAC3 7e69c9b6-049c-4d7a-8484-ed180d891b1e 33584fb87768ac36f54688a676c38709 { 'aliquot_tag': 'ALQ_dcd2b4da', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01138.RNA-Seq.genomic.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 6ca74d98-86ba-43a9-bd85-f8a097202ce9.rna_seq.genomic.gdc_realn.bam 9048925675 BAM genomic harmonized CPTAC3 80a66e75-5568-40d0-a2e1-18af7c74029b 44766b3bc7a377f272e17b0417267d4e { 'aliquot_tag': 'ALQ_e1b29d6a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01138.RNA-Seq.genomic.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 719dd013-5dcc-4da9-8305-90924f68c106.rna_seq.genomic.gdc_realn.bam 6264169674 BAM genomic harmonized CPTAC3 96734a75-38a3-4ee8-8c8d-1f76fa126096 f14b112d4d45a1a95eccc59578db1e60 { 'aliquot_tag': 'ALQ_8cb27779', 'gdc_sample_type': 'Primary Tumor' } +C3L-01138.RNA-Seq.R1_L002.T C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 190405_UNC32-K00270_0161_BH55FNBBXY_TGACCA_S5_L002_R1_001.fastq.gz 4269875054 FASTQ R1_L002 unaligned CPTAC3 87b6c3bd-006e-4541-8788-e6fe36fb4bc0 9e46cfefd601e26d91016c1d87b8a49d { 'aliquot_tag': 'ALQ_e1b29d6a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01138.RNA-Seq.R1_L007.A C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L007_R1_001.fastq.gz 3671894922 FASTQ R1_L007 unaligned CPTAC3 7385e76e-77e3-42c8-bffa-6512ac6f1c7f e2b1df6b8b388012fc49ca7f2972f9c8 { 'aliquot_tag': 'ALQ_dcd2b4da', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-01138.RNA-Seq.R2_L002.T C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 190405_UNC32-K00270_0161_BH55FNBBXY_TGACCA_S5_L002_R2_001.fastq.gz 4674041813 FASTQ R2_L002 unaligned CPTAC3 f88801c9-0c9b-4504-8766-7fb28da9af70 94e855fce1170ccef102b33f749782c4 { 'aliquot_tag': 'ALQ_e1b29d6a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01138.RNA-Seq.R2_L007.A C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L007_R2_001.fastq.gz 4034713163 FASTQ R2_L007 unaligned CPTAC3 274a4d30-85cd-45be-a44a-92b9bbad39e4 24ef7e84f816653a899756e2d6cd2149 { 'aliquot_tag': 'ALQ_dcd2b4da', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-01138.RNA-Seq.T C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 20210714_P1_A10_WB7988_plate1_S10_R1_001.fastq.gz 3262539991 FASTQ unaligned CPTAC3 7ac9df57-5261-4e4d-97d0-f89ebe26e2bc 727dfae420e8bef9a73295f6dbba4740 +C3L-01138.RNA-Seq.T C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 20210714_P1_A10_WB7988_plate1_S10_R2_001.fastq.gz 3525874971 FASTQ unaligned CPTAC3 44574794-ab0a-4ff0-b924-2e211433a67e a704da6730f1d1d68de240a690b92cbb C3L-01138.RNA-Seq.transcriptome.A.hg38 C3L-01138 HNSCC RNA-Seq tissue_normal CPT0199710009 831aaf71-5956-4783-93df-c4ac628ce7a5.rna_seq.transcriptome.gdc_realn.bam 9978171313 BAM transcriptome harmonized CPTAC3 df8bdf5c-4048-4978-9bd0-41b451a3e739 06f39c400304f24ce45594928677c2df { 'aliquot_tag': 'ALQ_dcd2b4da', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01138.RNA-Seq.transcriptome.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199700009 6ca74d98-86ba-43a9-bd85-f8a097202ce9.rna_seq.transcriptome.gdc_realn.bam 11425020060 BAM transcriptome harmonized CPTAC3 c2698e12-de0f-426a-9efa-6eee95660f39 2154bfa4f33ad95f0a339ff26dc474f6 { 'aliquot_tag': 'ALQ_e1b29d6a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01138.RNA-Seq.transcriptome.T.hg38 C3L-01138 HNSCC RNA-Seq tumor CPT0199720011 719dd013-5dcc-4da9-8305-90924f68c106.rna_seq.transcriptome.gdc_realn.bam 3889752068 BAM transcriptome harmonized CPTAC3 b99b7bfe-86bd-470e-bcfd-2768a18fea06 3448565d0c3bc6593834815ab79ed36c { 'aliquot_tag': 'ALQ_8cb27779', 'gdc_sample_type': 'Primary Tumor' } C3L-01138.WGS.N C3L-01138 HNSCC WGS blood_normal CPT0200380002 CPT0200380002.WholeGenome.RP-1303.bam 61869468074 BAM aligned CPTAC3 5b6736d9-5077-4616-99ec-ffbdfa828a1c 3d437144be6df81fdc6bc10bf3483356 { 'aliquot_tag': 'ALQ_6edb2f08', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01138.WGS.N.hg38 C3L-01138 HNSCC WGS blood_normal CPT0200380002 90e939ef-35e2-4b4c-98a8-0f6e22d7e0dc_wgs_gdc_realn.bam 89572705207 BAM harmonized CPTAC3 56b144c0-61e4-4cf6-bce8-bc633c8a0a3c 6eee5b3720adfbc33728e0a987a81e27 { 'aliquot_tag': 'ALQ_6edb2f08', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01138.WGS.T C3L-01138 HNSCC WGS tumor CPT0199700006 CPT0199700006.WholeGenome.RP-1303.bam 60823750266 BAM aligned CPTAC3 745955ab-97a7-421f-90a0-d7bd1441be61 e3d35d8f02b9cdc62471f359342f7889 { 'aliquot_tag': 'ALQ_710d80fb', 'gdc_sample_type': 'Primary Tumor' } @@ -5801,9 +6345,9 @@ C3L-01142.MethArray.Red.T C3L-01142 GBM Methylation Array tumor CPT0218330007 20 C3L-01142.miRNA-Seq.T C3L-01142 GBM miRNA-Seq tumor CPT0218330010 190828_UNC32-K00270_0200_BH7GVJBBXY_ACTGAT_S161_L008_R1_001.unaln.bam 349353716 BAM unaligned CPTAC3 a63900ea-f195-4548-97f1-850b5d92ce5a 37cb68a049b8abce9b98ff2a3a13a9ac { 'aliquot_tag': 'ALQ_115b008d', 'gdc_sample_type': 'Primary Tumor' } C3L-01142.miRNA-Seq.T.hg38 C3L-01142 GBM miRNA-Seq tumor CPT0218330010 9adba7d6-14f0-462c-a00c-7e7b5b1dbb95_mirnaseq_gdc_realn.bam 382838184 BAM harmonized CPTAC3 a0c7caa5-f562-42ad-aa27-a6f91756f27c 755bbe959ff2ec2392ba0a20068da487 { 'aliquot_tag': 'ALQ_115b008d', 'gdc_sample_type': 'Primary Tumor' } C3L-01142.RNA-Seq.chimeric.T.hg38 C3L-01142 GBM RNA-Seq tumor CPT0218330010 8302cb96-bb39-4394-a2dd-45e38d5a536e.rna_seq.chimeric.gdc_realn.bam 41795427 BAM chimeric harmonized CPTAC3 50a2f654-a2fd-4e92-820e-66f41a7ff96b 6c8c9e2a8493bf645ca17c4028973a40 { 'aliquot_tag': 'ALQ_115b008d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01142.RNA-Seq.genomic.T.hg38 C3L-01142 GBM RNA-Seq tumor CPT0218330010 8302cb96-bb39-4394-a2dd-45e38d5a536e.rna_seq.genomic.gdc_realn.bam 9076364435 BAM genomic harmonized CPTAC3 82fc2d8b-7e71-42f2-81bf-c7770f3b3fd2 3a60bf9277ff74de1b1da0513782ade4 { 'aliquot_tag': 'ALQ_115b008d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01142.RNA-Seq.R1_L007.T C3L-01142 GBM RNA-Seq tumor CPT0218330010 180918_UNC31-K00269_0152_AHWNJTBBXX_CCGTCC_S12_L007_R1_001.fastq.gz 3877177502 FASTQ R1_L007 unaligned CPTAC3 715d946d-0833-4686-b27c-4328f177eb3a 72e71f6fafe8aeb6dc2bd68f17ad84a0 { 'aliquot_tag': 'ALQ_115b008d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01142.RNA-Seq.R2_L007.T C3L-01142 GBM RNA-Seq tumor CPT0218330010 180918_UNC31-K00269_0152_AHWNJTBBXX_CCGTCC_S12_L007_R2_001.fastq.gz 3984707975 FASTQ R2_L007 unaligned CPTAC3 4d99975d-30c1-4664-b97e-5fc047d1e034 0b7ff7ae791bd42dc14e245cea13a260 { 'aliquot_tag': 'ALQ_115b008d', 'gdc_sample_type': 'Primary Tumor' } +C3L-01142.RNA-Seq.genomic.T.hg38 C3L-01142 GBM RNA-Seq tumor CPT0218330010 8302cb96-bb39-4394-a2dd-45e38d5a536e.rna_seq.genomic.gdc_realn.bam 9076364435 BAM genomic harmonized CPTAC3 1e9a6446-8dad-4efd-8641-7e56a007a11c 3a60bf9277ff74de1b1da0513782ade4 { 'aliquot_tag': 'ALQ_115b008d', 'gdc_sample_type': 'Primary Tumor' } +C3L-01142.RNA-Seq.R1_L007.T C3L-01142 GBM RNA-Seq tumor CPT0218330010 180918_UNC31-K00269_0152_AHWNJTBBXX_CCGTCC_S12_L007_R1_001.fastq.gz 3877177502 FASTQ R1_L007 unaligned CPTAC3 715d946d-0833-4686-b27c-4328f177eb3a 72e71f6fafe8aeb6dc2bd68f17ad84a0 { 'aliquot_tag': 'ALQ_115b008d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01142.RNA-Seq.R2_L007.T C3L-01142 GBM RNA-Seq tumor CPT0218330010 180918_UNC31-K00269_0152_AHWNJTBBXX_CCGTCC_S12_L007_R2_001.fastq.gz 3984707975 FASTQ R2_L007 unaligned CPTAC3 4d99975d-30c1-4664-b97e-5fc047d1e034 0b7ff7ae791bd42dc14e245cea13a260 { 'aliquot_tag': 'ALQ_115b008d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-01142.RNA-Seq.transcriptome.T.hg38 C3L-01142 GBM RNA-Seq tumor CPT0218330010 8302cb96-bb39-4394-a2dd-45e38d5a536e.rna_seq.transcriptome.gdc_realn.bam 9702009127 BAM transcriptome harmonized CPTAC3 505951df-f743-40e1-bcee-e5931893923c 1e0c93e6c644322263d32891485b8675 { 'aliquot_tag': 'ALQ_115b008d', 'gdc_sample_type': 'Primary Tumor' } C3L-01142.WGS.N C3L-01142 GBM WGS blood_normal CPT0220250002 CPT0220250002.WholeGenome.RP-1303.bam 55787583476 BAM aligned CPTAC3 7263c993-9921-4057-ab49-fc22479b3e39 3176ca815514ef507d12a64055965974 { 'aliquot_tag': 'ALQ_1f323f61', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01142.WGS.N.hg38 C3L-01142 GBM WGS blood_normal CPT0220250002 25d298e0-e9cb-4417-967b-e12bd47aed51_wgs_gdc_realn.bam 80145635598 BAM harmonized CPTAC3 3d8c241d-0d89-43e9-b612-0b8ebd6f56d8 6efa5b17715c71720150d84ac7f03281 { 'aliquot_tag': 'ALQ_1f323f61', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5816,9 +6360,9 @@ C3L-01142.WXS.T.hg38 C3L-01142 GBM WXS tumor CPT0218330007 89c5f9a8-85a9-4834-8b C3L-01146.miRNA-Seq.T C3L-01146 GBM miRNA-Seq tumor CPT0218690010 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L008_R1_001.unaln.bam 155751630 BAM unaligned CPTAC3 b07808cc-ac0c-43b2-9f43-3a3032f32c8a b4163176b312cc72e433ad44ef28be26 { 'aliquot_tag': 'ALQ_b26899f', 'gdc_sample_type': 'Primary Tumor' } C3L-01146.miRNA-Seq.T.hg38 C3L-01146 GBM miRNA-Seq tumor CPT0218690010 62a24bf2-715e-42b4-8738-7a7c3fe9da72_mirnaseq_gdc_realn.bam 180320865 BAM harmonized CPTAC3 9b19d6b4-2c06-4592-a201-f6189d715ae3 69f8242581f67f14bb40627fe735e9dd { 'aliquot_tag': 'ALQ_b26899f', 'gdc_sample_type': 'Primary Tumor' } C3L-01146.RNA-Seq.chimeric.T.hg38 C3L-01146 GBM RNA-Seq tumor CPT0218690010 fdaad4b3-332b-4187-8e0d-c2f639add45c.rna_seq.chimeric.gdc_realn.bam 33068431 BAM chimeric harmonized CPTAC3 7da0cf40-ae43-4cc0-95b5-27864fe0eb0c 9eb9d942ebf5213cafad694bc51078f2 { 'aliquot_tag': 'ALQ_b26899f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01146.RNA-Seq.genomic.T.hg38 C3L-01146 GBM RNA-Seq tumor CPT0218690010 fdaad4b3-332b-4187-8e0d-c2f639add45c.rna_seq.genomic.gdc_realn.bam 9296103786 BAM genomic harmonized CPTAC3 81366454-57db-4166-947f-3e72b8ab4c79 0c85ca323d464e81ea551e3e0ad3e2b2 { 'aliquot_tag': 'ALQ_b26899f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01146.RNA-Seq.R1_L008.T C3L-01146 GBM RNA-Seq tumor CPT0218690010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTCCGC_S17_L008_R1_001.fastq.gz 3810099551 FASTQ R1_L008 unaligned CPTAC3 7ee15def-b3f5-4f9f-876a-d5b5d58db477 3fe567036d72189bb6288d65bc76b492 { 'aliquot_tag': 'ALQ_b26899f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01146.RNA-Seq.R2_L008.T C3L-01146 GBM RNA-Seq tumor CPT0218690010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTCCGC_S17_L008_R2_001.fastq.gz 3989925929 FASTQ R2_L008 unaligned CPTAC3 4c23a61a-de61-41ba-99e8-23400a3f9234 e1d60990962ad440c491a14a5652d57b { 'aliquot_tag': 'ALQ_b26899f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01146.RNA-Seq.genomic.T.hg38 C3L-01146 GBM RNA-Seq tumor CPT0218690010 fdaad4b3-332b-4187-8e0d-c2f639add45c.rna_seq.genomic.gdc_realn.bam 9296103786 BAM genomic harmonized CPTAC3 dece33e2-6f3b-4e7d-a1cc-35b0f412328c 0c85ca323d464e81ea551e3e0ad3e2b2 { 'aliquot_tag': 'ALQ_b26899f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01146.RNA-Seq.R1_L008.T C3L-01146 GBM RNA-Seq tumor CPT0218690010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTCCGC_S17_L008_R1_001.fastq.gz 3810099551 FASTQ R1_L008 unaligned CPTAC3 7ee15def-b3f5-4f9f-876a-d5b5d58db477 3fe567036d72189bb6288d65bc76b492 { 'aliquot_tag': 'ALQ_b26899f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01146.RNA-Seq.R2_L008.T C3L-01146 GBM RNA-Seq tumor CPT0218690010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTCCGC_S17_L008_R2_001.fastq.gz 3989925929 FASTQ R2_L008 unaligned CPTAC3 4c23a61a-de61-41ba-99e8-23400a3f9234 e1d60990962ad440c491a14a5652d57b { 'aliquot_tag': 'ALQ_b26899f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-01146.RNA-Seq.transcriptome.T.hg38 C3L-01146 GBM RNA-Seq tumor CPT0218690010 fdaad4b3-332b-4187-8e0d-c2f639add45c.rna_seq.transcriptome.gdc_realn.bam 10846646271 BAM transcriptome harmonized CPTAC3 347bf7b8-f195-4505-aad0-60f16ca806aa 4dd7b7f585edb1b2c798bb43b57db833 { 'aliquot_tag': 'ALQ_b26899f', 'gdc_sample_type': 'Primary Tumor' } C3L-01146.WGS.N C3L-01146 GBM WGS blood_normal CPT0220330002 CPT0220330002.WholeGenome.RP-1303.bam 56384831654 BAM aligned CPTAC3 3c6b675e-92c2-45c4-9862-bc4ac9546252 425ad7bb0c9a2f73ba64fe3525a630de { 'aliquot_tag': 'ALQ_5b2e1964', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01146.WGS.N.hg38 C3L-01146 GBM WGS blood_normal CPT0220330002 222678a1-f4f8-4082-991a-ebd1f9181d29_wgs_gdc_realn.bam 80924153122 BAM harmonized CPTAC3 a48a7d58-0369-4a39-afaf-8eefb1a4fcfb edba4150e2fefb9d61d136700cf1f6d1 { 'aliquot_tag': 'ALQ_5b2e1964', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5833,9 +6377,9 @@ C3L-01149.MethArray.Red.T C3L-01149 GBM Methylation Array tumor CPT0218770006 20 C3L-01149.miRNA-Seq.T C3L-01149 GBM miRNA-Seq tumor CPT0218770009 190828_UNC32-K00270_0200_BH7GVJBBXY_ATTCCT_S149_L008_R1_001.unaln.bam 321003796 BAM unaligned CPTAC3 41f3cc14-bb45-4bb7-af50-1ffbf2148458 6e27eb90f5f1c624c6b9040c59d37daa { 'aliquot_tag': 'ALQ_1f8d6dbe', 'gdc_sample_type': 'Primary Tumor' } C3L-01149.miRNA-Seq.T.hg38 C3L-01149 GBM miRNA-Seq tumor CPT0218770009 809a4d7b-851b-4e75-a804-ea7f22491064_mirnaseq_gdc_realn.bam 365282860 BAM harmonized CPTAC3 0190e19a-11ed-46c2-a133-06de89fe8c32 34be33b317bbc8115dfa488e841b53f9 { 'aliquot_tag': 'ALQ_1f8d6dbe', 'gdc_sample_type': 'Primary Tumor' } C3L-01149.RNA-Seq.chimeric.T.hg38 C3L-01149 GBM RNA-Seq tumor CPT0218770009 afb49d12-b739-4e85-9ea9-24f23bd1036d.rna_seq.chimeric.gdc_realn.bam 38765553 BAM chimeric harmonized CPTAC3 795a75fe-009f-484b-8aa4-e3d6f808fada 62ddb49125ee746984cba86c69e7349a { 'aliquot_tag': 'ALQ_1f8d6dbe', 'gdc_sample_type': 'Primary Tumor' } -C3L-01149.RNA-Seq.genomic.T.hg38 C3L-01149 GBM RNA-Seq tumor CPT0218770009 afb49d12-b739-4e85-9ea9-24f23bd1036d.rna_seq.genomic.gdc_realn.bam 8407495391 BAM genomic harmonized CPTAC3 9addbb5d-56f7-486f-a02d-f6d2ca464311 6e648a30102c3f27333cac69ececa8e0 { 'aliquot_tag': 'ALQ_1f8d6dbe', 'gdc_sample_type': 'Primary Tumor' } -C3L-01149.RNA-Seq.R1_L008.T C3L-01149 GBM RNA-Seq tumor CPT0218770009 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGAAA_S18_L008_R1_001.fastq.gz 3863346811 FASTQ R1_L008 unaligned CPTAC3 0c930cce-77e8-4ebd-b0bd-bc7cfa4473be f72e1db3d8c26cb88fe11804fcdb1b29 { 'aliquot_tag': 'ALQ_1f8d6dbe', 'gdc_sample_type': 'Primary Tumor' } -C3L-01149.RNA-Seq.R2_L008.T C3L-01149 GBM RNA-Seq tumor CPT0218770009 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGAAA_S18_L008_R2_001.fastq.gz 3971137906 FASTQ R2_L008 unaligned CPTAC3 c28cab64-66d0-4d12-a7d3-d7005c4886ef 37263fea70dc1c8a7561b78b44de3170 { 'aliquot_tag': 'ALQ_1f8d6dbe', 'gdc_sample_type': 'Primary Tumor' } +C3L-01149.RNA-Seq.genomic.T.hg38 C3L-01149 GBM RNA-Seq tumor CPT0218770009 afb49d12-b739-4e85-9ea9-24f23bd1036d.rna_seq.genomic.gdc_realn.bam 8407495391 BAM genomic harmonized CPTAC3 4abbebf3-def3-46ff-ad15-d0a936e2a69d 6e648a30102c3f27333cac69ececa8e0 { 'aliquot_tag': 'ALQ_1f8d6dbe', 'gdc_sample_type': 'Primary Tumor' } +C3L-01149.RNA-Seq.R1_L008.T C3L-01149 GBM RNA-Seq tumor CPT0218770009 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGAAA_S18_L008_R1_001.fastq.gz 3863346811 FASTQ R1_L008 unaligned CPTAC3 0c930cce-77e8-4ebd-b0bd-bc7cfa4473be f72e1db3d8c26cb88fe11804fcdb1b29 { 'aliquot_tag': 'ALQ_1f8d6dbe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01149.RNA-Seq.R2_L008.T C3L-01149 GBM RNA-Seq tumor CPT0218770009 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGAAA_S18_L008_R2_001.fastq.gz 3971137906 FASTQ R2_L008 unaligned CPTAC3 c28cab64-66d0-4d12-a7d3-d7005c4886ef 37263fea70dc1c8a7561b78b44de3170 { 'aliquot_tag': 'ALQ_1f8d6dbe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-01149.RNA-Seq.transcriptome.T.hg38 C3L-01149 GBM RNA-Seq tumor CPT0218770009 afb49d12-b739-4e85-9ea9-24f23bd1036d.rna_seq.transcriptome.gdc_realn.bam 8479716847 BAM transcriptome harmonized CPTAC3 db261598-764d-4940-b0cf-bacb81de1210 3f7bc025e8a6ffdbe15960f4503ed668 { 'aliquot_tag': 'ALQ_1f8d6dbe', 'gdc_sample_type': 'Primary Tumor' } C3L-01149.WGS.N C3L-01149 GBM WGS blood_normal CPT0220350002 CPT0220350002.WholeGenome.RP-1303.bam 69210422044 BAM aligned CPTAC3 09a8205e-ea2b-4465-aa6f-747e5dcbf078 05d4b9d32ebeabffe1fbf7ce1234e409 { 'aliquot_tag': 'ALQ_d46eecc4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01149.WGS.N.hg38 C3L-01149 GBM WGS blood_normal CPT0220350002 28c09c40-a98f-4641-af84-2405ce473f60_wgs_gdc_realn.bam 99593736756 BAM harmonized CPTAC3 9f432dfa-d7d8-4d94-a885-2a60769ebcc4 a6342af0a6ba0246b1eba3caa0cf6efd { 'aliquot_tag': 'ALQ_d46eecc4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5850,9 +6394,9 @@ C3L-01154.MethArray.Red.T C3L-01154 GBM Methylation Array tumor CPT0218830007 20 C3L-01154.miRNA-Seq.T C3L-01154 GBM miRNA-Seq tumor CPT0218830010 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L008_R1_001.unaln.bam 199070786 BAM unaligned CPTAC3 99885ab8-6dfb-422e-bd76-45f997ef5e4d 71e38aced63a2fe8c954b274a6d5a48f { 'aliquot_tag': 'ALQ_7b9cf04e', 'gdc_sample_type': 'Primary Tumor' } C3L-01154.miRNA-Seq.T.hg38 C3L-01154 GBM miRNA-Seq tumor CPT0218830010 47cf00e8-baba-4301-b699-54e933962e88_mirnaseq_gdc_realn.bam 225908043 BAM harmonized CPTAC3 a8cb9240-cf12-4de4-8706-79c8dee51891 a8aa92ce324cf5a8e3ed4dbef578ce02 { 'aliquot_tag': 'ALQ_7b9cf04e', 'gdc_sample_type': 'Primary Tumor' } C3L-01154.RNA-Seq.chimeric.T.hg38 C3L-01154 GBM RNA-Seq tumor CPT0218830010 dc8f7dea-e281-4648-9487-e99b9a48d871.rna_seq.chimeric.gdc_realn.bam 36811277 BAM chimeric harmonized CPTAC3 51037884-0310-4419-9d36-dd2b2ee1623b bdfa81ffc351eaffc715e0142153fcba { 'aliquot_tag': 'ALQ_7b9cf04e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01154.RNA-Seq.genomic.T.hg38 C3L-01154 GBM RNA-Seq tumor CPT0218830010 dc8f7dea-e281-4648-9487-e99b9a48d871.rna_seq.genomic.gdc_realn.bam 8986583163 BAM genomic harmonized CPTAC3 f6631861-ebd2-4bdc-a196-8eb2f4c10694 e08b8e4c8b1a351c84de2153d15e66a6 { 'aliquot_tag': 'ALQ_7b9cf04e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01154.RNA-Seq.R1_L008.T C3L-01154 GBM RNA-Seq tumor CPT0218830010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGGCC_S19_L008_R1_001.fastq.gz 4182412620 FASTQ R1_L008 unaligned CPTAC3 60583fa7-45f0-40c0-97db-2d5320e7decf 3fdf3e2fa6428af994b30a5873b71216 { 'aliquot_tag': 'ALQ_7b9cf04e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01154.RNA-Seq.R2_L008.T C3L-01154 GBM RNA-Seq tumor CPT0218830010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGGCC_S19_L008_R2_001.fastq.gz 4348545918 FASTQ R2_L008 unaligned CPTAC3 5832bc32-dfa3-484e-b142-cfdf7230220d f28e8e869d805eca8d889ed587060dc2 { 'aliquot_tag': 'ALQ_7b9cf04e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01154.RNA-Seq.genomic.T.hg38 C3L-01154 GBM RNA-Seq tumor CPT0218830010 dc8f7dea-e281-4648-9487-e99b9a48d871.rna_seq.genomic.gdc_realn.bam 8986583163 BAM genomic harmonized CPTAC3 034a07e2-2dfb-4c94-8c5a-7dcea3321e79 e08b8e4c8b1a351c84de2153d15e66a6 { 'aliquot_tag': 'ALQ_7b9cf04e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01154.RNA-Seq.R1_L008.T C3L-01154 GBM RNA-Seq tumor CPT0218830010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGGCC_S19_L008_R1_001.fastq.gz 4182412620 FASTQ R1_L008 unaligned CPTAC3 60583fa7-45f0-40c0-97db-2d5320e7decf 3fdf3e2fa6428af994b30a5873b71216 { 'aliquot_tag': 'ALQ_7b9cf04e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01154.RNA-Seq.R2_L008.T C3L-01154 GBM RNA-Seq tumor CPT0218830010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTGGCC_S19_L008_R2_001.fastq.gz 4348545918 FASTQ R2_L008 unaligned CPTAC3 5832bc32-dfa3-484e-b142-cfdf7230220d f28e8e869d805eca8d889ed587060dc2 { 'aliquot_tag': 'ALQ_7b9cf04e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-01154.RNA-Seq.transcriptome.T.hg38 C3L-01154 GBM RNA-Seq tumor CPT0218830010 dc8f7dea-e281-4648-9487-e99b9a48d871.rna_seq.transcriptome.gdc_realn.bam 11293531194 BAM transcriptome harmonized CPTAC3 279f022e-9e25-4132-b4cb-8492bce9f594 1b298ba0f1ee5e705a33f2ce91a6efc4 { 'aliquot_tag': 'ALQ_7b9cf04e', 'gdc_sample_type': 'Primary Tumor' } C3L-01154.WGS.N C3L-01154 GBM WGS blood_normal CPT0220370002 CPT0220370002.WholeGenome.RP-1303.bam 54192901483 BAM aligned CPTAC3 b7267ba6-8f3b-438d-a26a-509a259829a5 f20840127e097056f2b5ea429d518983 { 'aliquot_tag': 'ALQ_aeaebfa4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01154.WGS.N.hg38 C3L-01154 GBM WGS blood_normal CPT0220370002 c3419dee-0a62-41b8-934c-b713bc7f713b_wgs_gdc_realn.bam 77363570233 BAM harmonized CPTAC3 c073a2bc-7cd9-47f2-a35f-bc52103a704c c638ded3a0e33021ea861b7b199fcc23 { 'aliquot_tag': 'ALQ_aeaebfa4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5867,9 +6411,9 @@ C3L-01155.MethArray.Red.T C3L-01155 GBM Methylation Array tumor CPT0218890007 20 C3L-01155.miRNA-Seq.T C3L-01155 GBM miRNA-Seq tumor CPT0218890010 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L008_R1_001.unaln.bam 156401444 BAM unaligned CPTAC3 36b26a13-5142-4de1-b985-235ddc0b93e3 08a85acc579f03d24b1e3fbbf30942ee { 'aliquot_tag': 'ALQ_312ce8ef', 'gdc_sample_type': 'Primary Tumor' } C3L-01155.miRNA-Seq.T.hg38 C3L-01155 GBM miRNA-Seq tumor CPT0218890010 090b9b60-2c19-48a1-bce3-09650174e989_mirnaseq_gdc_realn.bam 179917307 BAM harmonized CPTAC3 a0a9d0af-d92b-4e92-b250-a6a636bd60ab 70edcc04989d3209da6c092161e25744 { 'aliquot_tag': 'ALQ_312ce8ef', 'gdc_sample_type': 'Primary Tumor' } C3L-01155.RNA-Seq.chimeric.T.hg38 C3L-01155 GBM RNA-Seq tumor CPT0218890010 4a867a48-5798-45d8-8406-c3f294cc9ee7.rna_seq.chimeric.gdc_realn.bam 30991552 BAM chimeric harmonized CPTAC3 6e65aec2-3f07-4f24-9cf1-0f08b236987f 7017fd65594747f398fdf690bd3d1fd7 { 'aliquot_tag': 'ALQ_312ce8ef', 'gdc_sample_type': 'Primary Tumor' } -C3L-01155.RNA-Seq.genomic.T.hg38 C3L-01155 GBM RNA-Seq tumor CPT0218890010 4a867a48-5798-45d8-8406-c3f294cc9ee7.rna_seq.genomic.gdc_realn.bam 8068721698 BAM genomic harmonized CPTAC3 8e6c4c4c-00f7-4406-b770-e5a77f427a0d b5a18d738627d224e6c4606b6fd34aae { 'aliquot_tag': 'ALQ_312ce8ef', 'gdc_sample_type': 'Primary Tumor' } -C3L-01155.RNA-Seq.R1_L008.T C3L-01155 GBM RNA-Seq tumor CPT0218890010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTTTCG_S20_L008_R1_001.fastq.gz 3502370250 FASTQ R1_L008 unaligned CPTAC3 d71d8418-991d-4703-927e-878e1ea001f6 052b626e8053a49f2f6c554b5d2665d9 { 'aliquot_tag': 'ALQ_312ce8ef', 'gdc_sample_type': 'Primary Tumor' } -C3L-01155.RNA-Seq.R2_L008.T C3L-01155 GBM RNA-Seq tumor CPT0218890010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTTTCG_S20_L008_R2_001.fastq.gz 3655076132 FASTQ R2_L008 unaligned CPTAC3 e0720488-9d71-4fea-94a6-9cc46b89a41c 95e729570b607c411ce3733484530c09 { 'aliquot_tag': 'ALQ_312ce8ef', 'gdc_sample_type': 'Primary Tumor' } +C3L-01155.RNA-Seq.genomic.T.hg38 C3L-01155 GBM RNA-Seq tumor CPT0218890010 4a867a48-5798-45d8-8406-c3f294cc9ee7.rna_seq.genomic.gdc_realn.bam 8068721698 BAM genomic harmonized CPTAC3 56b88a54-e69f-402d-9d71-81ab8e469f36 b5a18d738627d224e6c4606b6fd34aae { 'aliquot_tag': 'ALQ_312ce8ef', 'gdc_sample_type': 'Primary Tumor' } +C3L-01155.RNA-Seq.R1_L008.T C3L-01155 GBM RNA-Seq tumor CPT0218890010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTTTCG_S20_L008_R1_001.fastq.gz 3502370250 FASTQ R1_L008 unaligned CPTAC3 d71d8418-991d-4703-927e-878e1ea001f6 052b626e8053a49f2f6c554b5d2665d9 { 'aliquot_tag': 'ALQ_312ce8ef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01155.RNA-Seq.R2_L008.T C3L-01155 GBM RNA-Seq tumor CPT0218890010 180918_UNC31-K00269_0152_AHWNJTBBXX_GTTTCG_S20_L008_R2_001.fastq.gz 3655076132 FASTQ R2_L008 unaligned CPTAC3 e0720488-9d71-4fea-94a6-9cc46b89a41c 95e729570b607c411ce3733484530c09 { 'aliquot_tag': 'ALQ_312ce8ef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-01155.RNA-Seq.transcriptome.T.hg38 C3L-01155 GBM RNA-Seq tumor CPT0218890010 4a867a48-5798-45d8-8406-c3f294cc9ee7.rna_seq.transcriptome.gdc_realn.bam 9189011863 BAM transcriptome harmonized CPTAC3 0bbf7ebf-c71a-47e6-953a-e066c3bc57cf 146a81d009400d6d3f344cb7d271858d { 'aliquot_tag': 'ALQ_312ce8ef', 'gdc_sample_type': 'Primary Tumor' } C3L-01155.WGS.N C3L-01155 GBM WGS blood_normal CPT0220390002 CPT0220390002.WholeGenome.RP-1303.bam 56404646991 BAM aligned CPTAC3 20d670db-fa04-4af2-a354-c8dc2e617f57 4dca9c66aa4fd55fb6a62714da7e0693 { 'aliquot_tag': 'ALQ_119e01c5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01155.WGS.N.hg38 C3L-01155 GBM WGS blood_normal CPT0220390002 48de787e-f39f-4052-920f-45a36255ba7b_wgs_gdc_realn.bam 81369207898 BAM harmonized CPTAC3 c4bced1d-cb6c-4837-b4eb-dad1507de56a 899c4fecfaa86449234d5ea64755e986 { 'aliquot_tag': 'ALQ_119e01c5', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5884,9 +6428,9 @@ C3L-01156.MethArray.Red.T C3L-01156 GBM Methylation Array tumor CPT0218960006 20 C3L-01156.miRNA-Seq.T C3L-01156 GBM miRNA-Seq tumor CPT0218960010 190228_UNC32-K00270_0151_AHYLY3BBXX_CACCGG_S30_L008_R1_001.unaln.bam 199293552 BAM unaligned CPTAC3 89a80b73-715e-4411-9e76-ab0f8068677c 036a985f07cbddae5b5888051288913f { 'aliquot_tag': 'ALQ_7820ac9b', 'gdc_sample_type': 'Primary Tumor' } C3L-01156.miRNA-Seq.T.hg38 C3L-01156 GBM miRNA-Seq tumor CPT0218960010 8995e2de-85d8-41ac-be42-74c2dca76894_mirnaseq_gdc_realn.bam 226123858 BAM harmonized CPTAC3 a51a049a-baed-4a38-979f-9c89750522b7 e721112d98c8accc4d439b96e3edded1 { 'aliquot_tag': 'ALQ_7820ac9b', 'gdc_sample_type': 'Primary Tumor' } C3L-01156.RNA-Seq.chimeric.T.hg38 C3L-01156 GBM RNA-Seq tumor CPT0218960010 8b798cfc-2040-4709-9089-fdc7c83b4b51.rna_seq.chimeric.gdc_realn.bam 35379215 BAM chimeric harmonized CPTAC3 ed233da3-8575-4bd3-9119-09c1328e689a f921c0a42513f641c1dc6652273d8bfd { 'aliquot_tag': 'ALQ_7820ac9b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01156.RNA-Seq.genomic.T.hg38 C3L-01156 GBM RNA-Seq tumor CPT0218960010 8b798cfc-2040-4709-9089-fdc7c83b4b51.rna_seq.genomic.gdc_realn.bam 7883382580 BAM genomic harmonized CPTAC3 d447a32a-e7c4-4bd8-b506-ca796f53de3d 2aae05cd7744a9f62cbc6c7b02e64951 { 'aliquot_tag': 'ALQ_7820ac9b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01156.RNA-Seq.R1_L008.T C3L-01156 GBM RNA-Seq tumor CPT0218960010 180918_UNC31-K00269_0153_BHWNFCBBXX_CGTACG_S29_L008_R1_001.fastq.gz 3528330279 FASTQ R1_L008 unaligned CPTAC3 c8f2ee66-29ac-4764-aa67-7e2ecd91ce3a b313e3afbdfdf7f7583c173dd291cfd9 { 'aliquot_tag': 'ALQ_7820ac9b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01156.RNA-Seq.R2_L008.T C3L-01156 GBM RNA-Seq tumor CPT0218960010 180918_UNC31-K00269_0153_BHWNFCBBXX_CGTACG_S29_L008_R2_001.fastq.gz 3828609242 FASTQ R2_L008 unaligned CPTAC3 052af4e4-ac86-48ea-8da0-a47bc581918f 63819791cd1762b5061e6ebc471c5f78 { 'aliquot_tag': 'ALQ_7820ac9b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01156.RNA-Seq.genomic.T.hg38 C3L-01156 GBM RNA-Seq tumor CPT0218960010 8b798cfc-2040-4709-9089-fdc7c83b4b51.rna_seq.genomic.gdc_realn.bam 7883382580 BAM genomic harmonized CPTAC3 59578824-6d48-44eb-ade3-4e5255e01626 2aae05cd7744a9f62cbc6c7b02e64951 { 'aliquot_tag': 'ALQ_7820ac9b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01156.RNA-Seq.R1_L008.T C3L-01156 GBM RNA-Seq tumor CPT0218960010 180918_UNC31-K00269_0153_BHWNFCBBXX_CGTACG_S29_L008_R1_001.fastq.gz 3528330279 FASTQ R1_L008 unaligned CPTAC3 c8f2ee66-29ac-4764-aa67-7e2ecd91ce3a b313e3afbdfdf7f7583c173dd291cfd9 { 'aliquot_tag': 'ALQ_7820ac9b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01156.RNA-Seq.R2_L008.T C3L-01156 GBM RNA-Seq tumor CPT0218960010 180918_UNC31-K00269_0153_BHWNFCBBXX_CGTACG_S29_L008_R2_001.fastq.gz 3828609242 FASTQ R2_L008 unaligned CPTAC3 052af4e4-ac86-48ea-8da0-a47bc581918f 63819791cd1762b5061e6ebc471c5f78 { 'aliquot_tag': 'ALQ_7820ac9b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-01156.RNA-Seq.transcriptome.T.hg38 C3L-01156 GBM RNA-Seq tumor CPT0218960010 8b798cfc-2040-4709-9089-fdc7c83b4b51.rna_seq.transcriptome.gdc_realn.bam 9327551476 BAM transcriptome harmonized CPTAC3 ef5bb1d1-43f9-4406-be71-b88ef1a154e7 aac5cfa0f4394e95a8b1e8bda6a00645 { 'aliquot_tag': 'ALQ_7820ac9b', 'gdc_sample_type': 'Primary Tumor' } C3L-01156.WGS.N C3L-01156 GBM WGS blood_normal CPT0220410002 CPT0220410002.WholeGenome.RP-1303.bam 53662836231 BAM aligned CPTAC3 bbc10dd1-8fc4-4ad6-a0bc-aaf15a1fe21b a1702ae08bab6e483dacd0070add2891 { 'aliquot_tag': 'ALQ_3ceb7abc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01156.WGS.N.hg38 C3L-01156 GBM WGS blood_normal CPT0220410002 27f1a6ae-b936-4581-8779-c3fa551c1650_wgs_gdc_realn.bam 76810545077 BAM harmonized CPTAC3 f9c7d2a9-08af-4b2c-b473-cbd25a09e5d8 828730be71f1dc4c60218562f1493cb9 { 'aliquot_tag': 'ALQ_3ceb7abc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5901,9 +6445,9 @@ C3L-01157.MethArray.Red.T C3L-01157 GBM Methylation Array tumor CPT0199770006 20 C3L-01157.miRNA-Seq.T C3L-01157 GBM miRNA-Seq tumor CPT0199770009 181219_UNC31-K00269_0173_BHYGJJBBXX_CTATAC_S38_L004_R1_001.unaln.bam 309033588 BAM unaligned CPTAC3 9f76f86c-e302-4c89-ab78-1a6d70b491c7 94b3e5aea7f318468ea2e0f239d4e0c4 { 'aliquot_tag': 'ALQ_5392417a', 'gdc_sample_type': 'Primary Tumor' } C3L-01157.miRNA-Seq.T.hg38 C3L-01157 GBM miRNA-Seq tumor CPT0199770009 75bee588-b666-4c4e-9561-44b468392f94_mirnaseq_gdc_realn.bam 342668233 BAM harmonized CPTAC3 5ed674b4-7728-413e-9025-13c5c07cca2b 2010acf6d0a49a6b80f633af1095060b { 'aliquot_tag': 'ALQ_5392417a', 'gdc_sample_type': 'Primary Tumor' } C3L-01157.RNA-Seq.chimeric.T.hg38 C3L-01157 GBM RNA-Seq tumor CPT0199770009 c0a30779-85f7-4c94-8902-14aea9cda83f.rna_seq.chimeric.gdc_realn.bam 138899945 BAM chimeric harmonized CPTAC3 3b73be6d-da58-49eb-9f98-3d3cd30a7cb1 e1f14425b8282adf56c2e83173a892d9 { 'aliquot_tag': 'ALQ_5392417a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01157.RNA-Seq.genomic.T.hg38 C3L-01157 GBM RNA-Seq tumor CPT0199770009 c0a30779-85f7-4c94-8902-14aea9cda83f.rna_seq.genomic.gdc_realn.bam 6263357662 BAM genomic harmonized CPTAC3 c2f52da3-d82e-456f-a040-7ccb27c1f1c9 88767002a2dfe7e8f9d3d19a09c99dda { 'aliquot_tag': 'ALQ_5392417a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01157.RNA-Seq.R1_L003.T C3L-01157 GBM RNA-Seq tumor CPT0199770009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R1_001.fastq.gz 2746501963 FASTQ R1_L003 unaligned CPTAC3 7e17f145-b0f4-4db5-8739-87119b0d9500 4ceb14bb56c9758debb290628dfdb78e { 'aliquot_tag': 'ALQ_5392417a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01157.RNA-Seq.R2_L003.T C3L-01157 GBM RNA-Seq tumor CPT0199770009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R2_001.fastq.gz 2884065208 FASTQ R2_L003 unaligned CPTAC3 f9a967f9-6406-40e3-8843-662f83c5f38d 7d9ab6671af4af8f9134b42e377be9b2 { 'aliquot_tag': 'ALQ_5392417a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01157.RNA-Seq.genomic.T.hg38 C3L-01157 GBM RNA-Seq tumor CPT0199770009 c0a30779-85f7-4c94-8902-14aea9cda83f.rna_seq.genomic.gdc_realn.bam 6263357662 BAM genomic harmonized CPTAC3 bd70d52d-8d95-4df2-b59c-5c0486c5aaa0 88767002a2dfe7e8f9d3d19a09c99dda { 'aliquot_tag': 'ALQ_5392417a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01157.RNA-Seq.R1_L003.T C3L-01157 GBM RNA-Seq tumor CPT0199770009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R1_001.fastq.gz 2746501963 FASTQ R1_L003 unaligned CPTAC3 7e17f145-b0f4-4db5-8739-87119b0d9500 4ceb14bb56c9758debb290628dfdb78e { 'aliquot_tag': 'ALQ_5392417a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01157.RNA-Seq.R2_L003.T C3L-01157 GBM RNA-Seq tumor CPT0199770009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R2_001.fastq.gz 2884065208 FASTQ R2_L003 unaligned CPTAC3 f9a967f9-6406-40e3-8843-662f83c5f38d 7d9ab6671af4af8f9134b42e377be9b2 { 'aliquot_tag': 'ALQ_5392417a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-01157.RNA-Seq.transcriptome.T.hg38 C3L-01157 GBM RNA-Seq tumor CPT0199770009 c0a30779-85f7-4c94-8902-14aea9cda83f.rna_seq.transcriptome.gdc_realn.bam 6390703144 BAM transcriptome harmonized CPTAC3 d3f2edc5-6400-49c5-87e1-2ba173c74919 69ced2aa37bdae93e87cef6397e821c7 { 'aliquot_tag': 'ALQ_5392417a', 'gdc_sample_type': 'Primary Tumor' } C3L-01157.WGS.N C3L-01157 GBM WGS blood_normal CPT0200400002 CPT0200400002.WholeGenome.RP-1303.bam 62002874799 BAM aligned CPTAC3 285ca7b1-1d00-43db-a2cf-62c62859b02b 5f54a1e824d383af84f481f6ff89f26d { 'aliquot_tag': 'ALQ_43ae5471', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01157.WGS.N.hg38 C3L-01157 GBM WGS blood_normal CPT0200400002 c3b0e158-5c09-4c05-9fb8-32f6b08c8b63_wgs_gdc_realn.bam 87977564481 BAM harmonized CPTAC3 656415e5-82ea-4184-8840-8dfb1cfa8c75 e6227bb570e2f65d0ffd43bfa4262a41 { 'aliquot_tag': 'ALQ_43ae5471', 'gdc_sample_type': 'Blood Derived Normal' } @@ -5931,11 +6475,11 @@ C3L-01158.MethArray.Green.A C3L-01158 PDA Methylation Array tissue_normal CPT017 C3L-01158.MethArray.Red.A C3L-01158 PDA Methylation Array tissue_normal CPT0171650055 203561620153_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 5cf053e3-3e92-4953-8783-a9ad3517e4ee 41b1219fb0eb58583c059c8daca9c11a { 'aliquot_tag': 'ALQ_b0aa2584', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01158.miRNA-Seq.T C3L-01158 PDA miRNA-Seq tumor CPT0171630017 190108_UNC31-K00269_0176_AHYGLVBBXX_ATCACG_S1_L002_R1_001.unaln.bam 167468804 BAM unaligned CPTAC3 31e8c10f-13ab-47a2-9e10-ed7187e28df0 e0663ca80e250032ea26c2c0b4267e70 { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor' } C3L-01158.miRNA-Seq.T.hg38 C3L-01158 PDA miRNA-Seq tumor CPT0171630017 390f11e4-d8d0-41ba-8e37-b4ceceb124f4_mirnaseq_gdc_realn.bam 187473717 BAM harmonized CPTAC3 9ab97b2e-880d-4227-87d9-68f84972e2bf eb249f93efbf5796e833c1ad441887e7 { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01158.RNA-Seq.chimeric.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8055c386-be6b-42c3-af1c-a6378e36b04f.rna_seq.chimeric.gdc_realn.bam 32770665 BAM chimeric harmonized CPTAC3 7933b77b-7cde-4ee3-ac57-a4b0055817f0 d3af687762126870a58a405f52171271 { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01158.RNA-Seq.genomic.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8055c386-be6b-42c3-af1c-a6378e36b04f.rna_seq.genomic.gdc_realn.bam 12188572936 BAM genomic harmonized CPTAC3 d7890766-18d3-427d-a2c8-2277f4ea91ed e9422ea6479cddaccf4c312d677ee23e { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01158.RNA-Seq.R1_L002.T C3L-01158 PDA RNA-Seq tumor CPT0171630017 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R1_001.fastq.gz 4754861470 FASTQ R1_L002 unaligned CPTAC3 ece270eb-efc7-440c-9a45-8c8000ba796c 8faa449e5cf9a16a7b19da3b82f0291e { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01158.RNA-Seq.R2_L002.T C3L-01158 PDA RNA-Seq tumor CPT0171630017 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R2_001.fastq.gz 4535272581 FASTQ R2_L002 unaligned CPTAC3 cc148b01-aa6a-40cf-ac6c-75d6bbedd59b da1dd6c3a66dda928dcc199d64c8dc64 { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01158.RNA-Seq.transcriptome.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8055c386-be6b-42c3-af1c-a6378e36b04f.rna_seq.transcriptome.gdc_realn.bam 10135311044 BAM transcriptome harmonized CPTAC3 5649b48f-6546-464e-872f-2eec6deb84b8 0d69a55edd899b5f0ffed4bc00243583 { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01158.RNA-Seq.chimeric.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8d10d891-8405-41eb-9068-67c3e5e2316c.rna_seq.chimeric.gdc_realn.bam 32806523 BAM chimeric harmonized CPTAC3 185743d3-1be8-4521-ad84-7cc1a154c145 86f19f8ce147d5cd426df03bb7af6dd4 { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01158.RNA-Seq.genomic.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8d10d891-8405-41eb-9068-67c3e5e2316c.rna_seq.genomic.gdc_realn.bam 12190257066 BAM genomic harmonized CPTAC3 cb20a257-7164-436b-b223-1fa8fed27ca1 0f6b3a14f336a7601115e4c5fbd89dce { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01158.RNA-Seq.R1_L002.T C3L-01158 PDA RNA-Seq tumor CPT0171630017 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R1_001.fastq.gz 4754861470 FASTQ R1_L002 unaligned CPTAC3 ece270eb-efc7-440c-9a45-8c8000ba796c 8faa449e5cf9a16a7b19da3b82f0291e { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01158.RNA-Seq.R2_L002.T C3L-01158 PDA RNA-Seq tumor CPT0171630017 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R2_001.fastq.gz 4535272581 FASTQ R2_L002 unaligned CPTAC3 cc148b01-aa6a-40cf-ac6c-75d6bbedd59b da1dd6c3a66dda928dcc199d64c8dc64 { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01158.RNA-Seq.transcriptome.T.hg38 C3L-01158 PDA RNA-Seq tumor CPT0171630017 8d10d891-8405-41eb-9068-67c3e5e2316c.rna_seq.transcriptome.gdc_realn.bam 11045165290 BAM transcriptome harmonized CPTAC3 4c0e48ec-5528-4754-a11a-acd621e5515a 2624bbe2737aa5714ade3097e889f8d8 { 'aliquot_tag': 'ALQ_b588740c', 'gdc_sample_type': 'Primary Tumor' } C3L-01158.WGS.N C3L-01158 PDA WGS blood_normal CPT0171560002 CPT0171560002.WholeGenome.RP-1303.bam 60515833377 BAM aligned CPTAC3 301ba45f-36aa-44d0-a7de-d3b450ca4f2e 10ebe6de3cefc7cbc144f9941165eb1e { 'aliquot_tag': 'ALQ_928d4c1c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01158.WGS.N.hg38 C3L-01158 PDA WGS blood_normal CPT0171560002 81ae0d3c-0a91-4f41-9d28-b0c866abac8e_wgs_gdc_realn.bam 87190218525 BAM harmonized CPTAC3 4b59a227-4b74-463b-b8c6-964f07c841b7 474da798a5c01d369023b994496dd8a6 { 'aliquot_tag': 'ALQ_928d4c1c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01158.WXS.A C3L-01158 PDA WXS tissue_normal CPT0171650055 CPT0171650055.WholeExome.RP-1303.bam 39910866153 BAM aligned CPTAC3 f6b0e467-6f94-47b2-975d-e6a11ec14ad7 b756fa7b81328859d82c0f4eeff048ce { 'aliquot_tag': 'ALQ_b0aa2584', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -5958,67 +6502,88 @@ C3L-01160.DUP_e67b0711.WXS.T C3L-01160 PDA WXS tumor CPT0170600024 CPT0170600024 C3L-01160.DUP_e67b0711.WXS.T.hg38 C3L-01160 PDA WXS tumor CPT0170600024 2df2e6e8-e52d-44fe-8fa0-b2fb6a0f37cf_wxs_gdc_realn.bam 80069242436 BAM harmonized CPTAC3 ad37577b-d536-4929-9cbc-cb39d4bb9969 7a58e168809bef442c484ba5f55020b2 { 'aliquot_tag': 'DUP_e67b0711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA Pilot - bulk-derived DNA' } C3L-01160.miRNA-Seq.T C3L-01160 PDA miRNA-Seq tumor CPT0170600015 190108_UNC31-K00269_0176_AHYGLVBBXX_CGATGT_S2_L002_R1_001.unaln.bam 221634763 BAM unaligned CPTAC3 e3473974-ec7c-4133-b635-1ca02d4721c9 85eea2ca93ffcd5d5695ed13c472576e { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor' } C3L-01160.miRNA-Seq.T.hg38 C3L-01160 PDA miRNA-Seq tumor CPT0170600015 fad624ff-e1cb-4c9f-a5fd-4c771225127d_mirnaseq_gdc_realn.bam 241614413 BAM harmonized CPTAC3 313d4c80-9294-44eb-b9a3-a782d4529e2b 687f82ec4c1361fbfe46948ca80e5cdc { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor' } -C3L-01160.RNA-Seq.chimeric.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 45ee9cab-619e-404f-8d91-32fa6a0f2e60.rna_seq.chimeric.gdc_realn.bam 33480621 BAM chimeric harmonized CPTAC3 be5f89fe-35b6-4b4f-951c-9bdb5a18937d 1527b9307b54f7953fd3c230e9309f45 { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor' } -C3L-01160.RNA-Seq.genomic.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 45ee9cab-619e-404f-8d91-32fa6a0f2e60.rna_seq.genomic.gdc_realn.bam 13460468845 BAM genomic harmonized CPTAC3 76ec29c6-fbcf-48a7-96ae-0d3adee6f52c 01a6ca7fe4b39141273c814a54d137d5 { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor' } -C3L-01160.RNA-Seq.R1_L002.T C3L-01160 PDA RNA-Seq tumor CPT0170600015 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4360439785 FASTQ R1_L002 unaligned CPTAC3 f65ed51b-3ffb-4d6d-8b3b-4cc508e8e68b 7438c37cc32841ff81f6c2df1ddb69d0 { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor' } -C3L-01160.RNA-Seq.R2_L002.T C3L-01160 PDA RNA-Seq tumor CPT0170600015 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4741609485 FASTQ R2_L002 unaligned CPTAC3 20a9db35-056d-43aa-b71d-dea448930ef0 be78f4274c931011a1fcdb9a22845c67 { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor' } -C3L-01160.RNA-Seq.transcriptome.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 45ee9cab-619e-404f-8d91-32fa6a0f2e60.rna_seq.transcriptome.gdc_realn.bam 9169790876 BAM transcriptome harmonized CPTAC3 2bdffa7b-e204-499f-88b3-087ed1f1f04b cf795a3f5e8baa0969f12055d8b5f7a0 { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor' } +C3L-01160.RNA-Seq.chimeric.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 c2e91b7e-2c7b-4f69-98fa-276e884f9c32.rna_seq.chimeric.gdc_realn.bam 33464846 BAM chimeric harmonized CPTAC3 b2322eef-0e56-43c9-89fe-13fe52c61fc1 851c54dccde689630c014b17724744bc { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor' } +C3L-01160.RNA-Seq.genomic.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 c2e91b7e-2c7b-4f69-98fa-276e884f9c32.rna_seq.genomic.gdc_realn.bam 13484325163 BAM genomic harmonized CPTAC3 76085a29-ab12-480b-b221-6e936e8fc759 4d3159a5259a0069062acfa1f693f9d7 { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor' } +C3L-01160.RNA-Seq.R1_L002.T C3L-01160 PDA RNA-Seq tumor CPT0170600015 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4360439785 FASTQ R1_L002 unaligned CPTAC3 f65ed51b-3ffb-4d6d-8b3b-4cc508e8e68b 7438c37cc32841ff81f6c2df1ddb69d0 { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01160.RNA-Seq.R2_L002.T C3L-01160 PDA RNA-Seq tumor CPT0170600015 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4741609485 FASTQ R2_L002 unaligned CPTAC3 20a9db35-056d-43aa-b71d-dea448930ef0 be78f4274c931011a1fcdb9a22845c67 { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01160.RNA-Seq.transcriptome.T.hg38 C3L-01160 PDA RNA-Seq tumor CPT0170600015 c2e91b7e-2c7b-4f69-98fa-276e884f9c32.rna_seq.transcriptome.gdc_realn.bam 10090542222 BAM transcriptome harmonized CPTAC3 b5657438-0e30-4433-b161-390a1aedcd35 1b1e7117d4c9f3976b748c3ba7295a52 { 'aliquot_tag': 'ALQ_ba516444', 'gdc_sample_type': 'Primary Tumor' } C3L-01160.WGS.N C3L-01160 PDA WGS blood_normal CPT0167290002 CPT0167290002.WholeGenome.RP-1303.bam 64378887116 BAM aligned CPTAC3 3bc55e0a-e5f9-498b-9516-e25f1b171625 6a31044e1774ec0f6a28050718155cd5 { 'aliquot_tag': 'ALQ_a2a2ded1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01160.WGS.N.hg38 C3L-01160 PDA WGS blood_normal CPT0167290002 07384100-195f-4071-a266-1ba880b66180_wgs_gdc_realn.bam 92607286794 BAM harmonized CPTAC3 159ed349-6664-4f63-a807-2c0ec490012b f33f7b553e8b8abcc48964a03f773c99 { 'aliquot_tag': 'ALQ_a2a2ded1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01160.WXS.N C3L-01160 PDA WXS blood_normal CPT0167290002 CPT0167290002.WholeExome.RP-1303.bam 24421148529 BAM aligned CPTAC3 afa7c130-3731-41ca-a718-fbdf0600a69a d111ad4dc20f7c2bd14b5f08e61f54e6 { 'aliquot_tag': 'ALQ_a2a2ded1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01160.WXS.N.hg38 C3L-01160 PDA WXS blood_normal CPT0167290002 07384100-195f-4071-a266-1ba880b66180_wxs_gdc_realn.bam 33237579668 BAM harmonized CPTAC3 3cde2ea0-7e8b-4f0d-afc2-c0cb05a56245 8f69626d2497a615179f52cf6589d1b6 { 'aliquot_tag': 'ALQ_a2a2ded1', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-01182.MethArray.Green.Tpb C3L-01182 AML Methylation Array tumor_peripheral_blood CPT0338160001 205707890143_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e5428025-e008-40fe-9537-e0748fe03957 9627f2fbd75c66f1a19c6dfcd9a254db { 'aliquot_tag': 'ALQ_af313c1f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01182.MethArray.Red.Tpb C3L-01182 AML Methylation Array tumor_peripheral_blood CPT0338160001 205707890143_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 2356c956-4851-4e4f-b0d6-c52da5b2c3c1 1be172b40339f9431643eefcd6bc25cc { 'aliquot_tag': 'ALQ_af313c1f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01182.miRNA-Seq.Tpb C3L-01182 AML miRNA-Seq tumor_peripheral_blood CPT0338140004 220125_UNC32-K00270_0311_AHMNYYBBXY_TGACCA_S22_L001_R1_001.unaln.bam 318733137 BAM unaligned CPTAC3 fa6fc1c3-ff21-4339-84c4-8566715d6a19 dac3a5718cd1fa4aec3ab39f8c440df0 { 'aliquot_tag': 'ALQ_a59b9bf0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-01182.RNA-Seq.R1_L008.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R1_001.fastq.gz 2683736462 FASTQ R1_L008 unaligned CPTAC3 3364d291-2534-49ae-b9e4-536ea85d6c47 f5e6873856eb9d9565d38a4343804916 { 'aliquot_tag': 'ALQ_a59b9bf0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-01182.RNA-Seq.R2_L008.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R2_001.fastq.gz 2896718250 FASTQ R2_L008 unaligned CPTAC3 22838a11-4def-4406-a04d-b9cfdfee17d2 a08725d2efc48ee9599d2e866c1483fb { 'aliquot_tag': 'ALQ_a59b9bf0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01182.miRNA-Seq.Tpb.hg38 C3L-01182 AML miRNA-Seq tumor_peripheral_blood CPT0338140004 c3b964ae-40af-4dbe-b2c2-0eda709dd565_mirnaseq_gdc_realn.bam 364034201 BAM harmonized CPTAC3 1ee59aa3-3d19-464d-8236-d88b0e2c31b4 cb995f374208280f8d51ad400f8c85e0 { 'aliquot_tag': 'ALQ_a59b9bf0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01182.RNA-Seq.chimeric.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.chimeric.gdc_realn.bam 223102924 BAM chimeric harmonized CPTAC3 18d6fcdc-5d27-4490-9eb5-7af91ede22f7 fdbd6a14f06ef240edd4baafb6fdeff8 { 'aliquot_tag': 'ALQ_a59b9bf0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01182.RNA-Seq.genomic.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.genomic.gdc_realn.bam 5572543578 BAM genomic harmonized CPTAC3 4689e2e4-10aa-472a-b7b0-897370f61311 77b3a953a442e7dad921686c77edcfe7 { 'aliquot_tag': 'ALQ_a59b9bf0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01182.RNA-Seq.R1_L008.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R1_001.fastq.gz 2683736462 FASTQ R1_L008 unaligned CPTAC3 3364d291-2534-49ae-b9e4-536ea85d6c47 f5e6873856eb9d9565d38a4343804916 { 'aliquot_tag': 'ALQ_a59b9bf0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L008' } +C3L-01182.RNA-Seq.R2_L008.Tpb C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 211207_UNC32-K00270_0305_AHMW37BBXY_AACGTTCC-GGAGTACT_S29_L008_R2_001.fastq.gz 2896718250 FASTQ R2_L008 unaligned CPTAC3 22838a11-4def-4406-a04d-b9cfdfee17d2 a08725d2efc48ee9599d2e866c1483fb { 'aliquot_tag': 'ALQ_a59b9bf0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L008' } +C3L-01182.RNA-Seq.transcriptome.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood CPT0338140004 2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.transcriptome.gdc_realn.bam 4297487254 BAM transcriptome harmonized CPTAC3 9b295ada-4f40-424b-b26e-1e89960bf526 e9d005081f333ca887a3e2f0671c0023 { 'aliquot_tag': 'ALQ_a59b9bf0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01182.WGS.Nbc C3L-01182 AML WGS buccal_normal CPT0338180003 CPT0338180003.WholeGenome.RP-2158.bam 49209749471 BAM aligned CPTAC3 3086d82e-74c9-4bba-a245-98cf41b540dd fee5a8fa4379875c9aa7052a0f9b4bb7 { 'aliquot_tag': 'ALQ_fe0fe352', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01182.WGS.Nbc.hg38 C3L-01182 AML WGS buccal_normal CPT0338180003 a3d7c356-f06c-42e9-86d5-945264790f85_wgs_gdc_realn.bam 166664638598 BAM harmonized CPTAC3 d7132b30-16af-41cd-a0be-7ed4971b0d12 70013bbe24fc361615e7cc2eed287f95 { 'aliquot_tag': 'ALQ_fe0fe352', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01182.WGS.Tpb C3L-01182 AML WGS tumor_peripheral_blood CPT0338160001 CPT0338160001.WholeGenome.RP-2158.bam 41162131471 BAM aligned CPTAC3 7457b708-7968-445d-92b4-77f9294e1f8b f174c0b511291e33a5ec38f124172ac4 { 'aliquot_tag': 'ALQ_af313c1f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01182.WGS.Tpb.hg38 C3L-01182 AML WGS tumor_peripheral_blood CPT0338160001 204def57-8086-4ef1-b2e8-1eec67459146_wgs_gdc_realn.bam 118587662579 BAM harmonized CPTAC3 9203d3b3-eb05-4923-989d-1c8abb8a42ea d08994bb9daa2c53ad35f9d54350887b { 'aliquot_tag': 'ALQ_af313c1f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01182.WXS.Nbc C3L-01182 AML WXS buccal_normal CPT0338180003 CPT0338180003.WholeExome.RP-1303.bam 19894836681 BAM aligned CPTAC3 9c4439c5-4676-4a10-b988-b46075f1174e 2bdbc35672ab27cd2a1058f9af984fe0 { 'aliquot_tag': 'ALQ_fe0fe352', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01182.WXS.Nbc.hg38 C3L-01182 AML WXS buccal_normal CPT0338180003 a3d7c356-f06c-42e9-86d5-945264790f85_wxs_gdc_realn.bam 27428631714 BAM harmonized CPTAC3 22ab3498-8a5a-40a2-ae0d-5a1c43a40b3e 2180cc91bc81295bc527d220d1268e39 { 'aliquot_tag': 'ALQ_fe0fe352', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01182.WXS.Tpb C3L-01182 AML WXS tumor_peripheral_blood CPT0338160001 CPT0338160001.WholeExome.RP-1303.bam 28816819387 BAM aligned CPTAC3 017cd4a9-15f2-4e98-b6aa-b98512225763 e93d2ece70c157dfb8bf00d6c71d551f { 'aliquot_tag': 'ALQ_af313c1f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01182.WXS.Tpb.hg38 C3L-01182 AML WXS tumor_peripheral_blood CPT0338160001 204def57-8086-4ef1-b2e8-1eec67459146_wxs_gdc_realn.bam 39867603059 BAM harmonized CPTAC3 785e0821-0b17-45c6-bd0b-669c180df2fc 5d527931c13ffc3a059c57ec085bcd96 { 'aliquot_tag': 'ALQ_af313c1f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01187.MethArray.Green.Tbm C3L-01187 AML Methylation Array tumor_bone_marrow CPT0338430002 205555390128_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 c2e662b9-310e-4962-aa84-1ec287040472 b89172c2372c1dca44f03966f295332e { 'aliquot_tag': 'ALQ_ae157366', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01187.MethArray.Red.Tbm C3L-01187 AML Methylation Array tumor_bone_marrow CPT0338430002 205555390128_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 e3428ba2-22b9-4a68-9dba-3f948a7b2c24 2e0bd190d81f9b9eb0ffcff2089e3b89 { 'aliquot_tag': 'ALQ_ae157366', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01187.miRNA-Seq.Tbm C3L-01187 AML miRNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCATTC_S29_L007_R1_001.unaln.bam 312695347 BAM unaligned CPTAC3 868e5fcb-7d24-4d1a-803d-b0226a570ff5 0d348ddcfd8341266194b4976890563a { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01187.miRNA-Seq.Tbm.hg38 C3L-01187 AML miRNA-Seq tumor_bone_marrow CPT0338420002 88f604d7-a73b-4c2c-8ecd-033cf6ae804b_mirnaseq_gdc_realn.bam 339311267 BAM harmonized CPTAC3 487793ef-e987-409e-9305-f6cbd65c7566 b2431e8cbdddac7b72d702f6034502a4 { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01187.RNA-Seq.chimeric.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.chimeric.gdc_realn.bam 101722919 BAM chimeric harmonized CPTAC3 0fe7640f-0e13-4466-b83c-0fad35806f6e bff44ad986fbbe867297cf834333f029 { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01187.RNA-Seq.genomic.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.genomic.gdc_realn.bam 7315628890 BAM genomic harmonized CPTAC3 7ce6e03b-5705-4007-b432-200984d1ce38 b649309c87ff09c570223d858f528ea1 { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01187.RNA-Seq.R1_L004.Tbm C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC32-K00270_0278_AHL3YTBBXY_TACTCATA-CCTGTGGC_S15_L004_R1_001.fastq.gz 3753235852 FASTQ R1_L004 unaligned CPTAC3 36a6daf5-34a1-4963-b49d-99fedf970fb3 1a4ea75c3b533461ca692906319f11e0 { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01187.RNA-Seq.R2_L004.Tbm C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC32-K00270_0278_AHL3YTBBXY_TACTCATA-CCTGTGGC_S15_L004_R2_001.fastq.gz 4042840966 FASTQ R2_L004 unaligned CPTAC3 b0aace93-074d-4c07-9e93-9c9e28d62cd3 4cfd0c04ff16b563c7e11b6d15595e12 { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01187.RNA-Seq.transcriptome.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.transcriptome.gdc_realn.bam 9775894952 BAM transcriptome harmonized CPTAC3 9bdb66d0-0788-4966-8cfe-bc0f09430120 29b1923ade6b7bb80c11b5c58c6b9d6c { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01187.RNA-Seq.chimeric.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.chimeric.gdc_realn.bam 101722919 BAM chimeric harmonized CPTAC3 771ce5b4-6775-4d0b-b121-650de0c6bba1 bff44ad986fbbe867297cf834333f029 { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01187.RNA-Seq.genomic.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.genomic.gdc_realn.bam 7315628890 BAM genomic harmonized CPTAC3 9c5d12b5-97f0-419e-82bf-f2efc4f298e7 b649309c87ff09c570223d858f528ea1 { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01187.RNA-Seq.R1_L004.Tbm C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC32-K00270_0278_AHL3YTBBXY_TACTCATA-CCTGTGGC_S15_L004_R1_001.fastq.gz 3753235852 FASTQ R1_L004 unaligned CPTAC3 36a6daf5-34a1-4963-b49d-99fedf970fb3 1a4ea75c3b533461ca692906319f11e0 { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-01187.RNA-Seq.R2_L004.Tbm C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 210331_UNC32-K00270_0278_AHL3YTBBXY_TACTCATA-CCTGTGGC_S15_L004_R2_001.fastq.gz 4042840966 FASTQ R2_L004 unaligned CPTAC3 b0aace93-074d-4c07-9e93-9c9e28d62cd3 4cfd0c04ff16b563c7e11b6d15595e12 { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-01187.RNA-Seq.transcriptome.Tbm.hg38 C3L-01187 AML RNA-Seq tumor_bone_marrow CPT0338420002 a016fd0a-6a84-4d16-8ed2-cf757d6ecf5b.rna_seq.transcriptome.gdc_realn.bam 9775894952 BAM transcriptome harmonized CPTAC3 eb15d193-e667-4e5a-b06f-b653db49fc92 29b1923ade6b7bb80c11b5c58c6b9d6c { 'aliquot_tag': 'ALQ_93755ad6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01187.WGS.Tbm C3L-01187 AML WGS tumor_bone_marrow CPT0338430002 CPT0338430002.WholeGenome.RP-2158.bam 43790738502 BAM aligned CPTAC3 1a0e092d-c61e-4f76-95e0-20bb2377ad0a 839a1b10357a233811e0a8f44811f824 { 'aliquot_tag': 'ALQ_ae157366', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01187.WGS.Tbm.hg38 C3L-01187 AML WGS tumor_bone_marrow CPT0338430002 1863f9ce-3290-488b-9291-8325fe6a6608_wgs_gdc_realn.bam 126568595557 BAM harmonized CPTAC3 7d3e6c79-f869-4a7a-a1d6-fb496853d8e8 ee4178624b4ec3ca4f521b4ba2aecbf0 { 'aliquot_tag': 'ALQ_ae157366', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01187.WXS.Nbc C3L-01187 AML WXS buccal_normal CPT0338440004 CPT0338440004.WholeExome.RP-1303.bam 26631554741 BAM aligned CPTAC3 c758d3d2-48c8-45ed-baee-38459fa1b9dd 492171df2f5ffe3075e3685b9521d7c2 { 'aliquot_tag': 'ALQ_f5560a43', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01187.WXS.Nbc.hg38 C3L-01187 AML WXS buccal_normal CPT0338440004 0511313c-45b8-4efc-ada5-2ba9a2cc67a3_wxs_gdc_realn.bam 35989060288 BAM harmonized CPTAC3 ec6f0fdb-2025-4824-8be4-aea9c55ebb72 430a24383d3fd8b4d29b285fb91e1ceb { 'aliquot_tag': 'ALQ_f5560a43', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01187.WXS.Tbm C3L-01187 AML WXS tumor_bone_marrow CPT0338430002 CPT0338430002.WholeExome.RP-1303.bam 30138786215 BAM aligned CPTAC3 9b909215-8af2-4abd-bc19-aa8ab6cc55b6 5c7dc01877c0d62944f24ec340ebd76c { 'aliquot_tag': 'ALQ_ae157366', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01187.WXS.Tbm.hg38 C3L-01187 AML WXS tumor_bone_marrow CPT0338430002 1863f9ce-3290-488b-9291-8325fe6a6608_wxs_gdc_realn.bam 41773581801 BAM harmonized CPTAC3 921dcbd0-ce38-4af9-aea5-8c31b4105cce 5585d5e2ca8ecd94230dd3bdcee29173 { 'aliquot_tag': 'ALQ_ae157366', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01188.MethArray.Green.Tbm C3L-01188 AML Methylation Array tumor_bone_marrow CPT0338510002 205589740003_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a627a14e-bb18-49a0-bb48-0da69eb679f3 87f0ad020cd6a9352c067c05dc409b5a { 'aliquot_tag': 'ALQ_1f89f3a3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01188.MethArray.Red.Tbm C3L-01188 AML Methylation Array tumor_bone_marrow CPT0338510002 205589740003_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 87350985-31e0-4a03-8095-a430e169f6b4 80306902795351d65009b3ec6116e330 { 'aliquot_tag': 'ALQ_1f89f3a3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01188.miRNA-Seq.Tbm C3L-01188 AML miRNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCCCGA_S30_L007_R1_001.unaln.bam 250272970 BAM unaligned CPTAC3 98da385e-768d-4444-9f28-cea94bb1e460 bfd13b6fc1fb4e9af5766d74482ae844 { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01188.miRNA-Seq.Tbm.hg38 C3L-01188 AML miRNA-Seq tumor_bone_marrow CPT0338480002 7fc7f4c0-1683-4b62-be1e-d3b1e56cb736_mirnaseq_gdc_realn.bam 265557404 BAM harmonized CPTAC3 c226ddd7-e030-4a51-accf-a0b774d321e2 b5a0ed88ed6bf6fec5ad4690dc6e8a59 { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01188.RNA-Seq.chimeric.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 c4ccddac-6605-48f1-9033-c3b0cec321bc.rna_seq.chimeric.gdc_realn.bam 78292869 BAM chimeric harmonized CPTAC3 0f935763-3f13-473c-91c5-5176e5356544 d7657f1f8523164303b909ac22faa8cf { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01188.RNA-Seq.genomic.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 c4ccddac-6605-48f1-9033-c3b0cec321bc.rna_seq.genomic.gdc_realn.bam 7688234249 BAM genomic harmonized CPTAC3 6d0d43e2-9964-4108-8ddf-9c117d0ebca3 e6f3990ce10749cc90efb8ea927dc697 { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01188.RNA-Seq.R1_L004.Tbm C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGTCTGCG-TTCACAAT_S13_L004_R1_001.fastq.gz 3897699936 FASTQ R1_L004 unaligned CPTAC3 65a13af0-794a-4f67-954b-26d8b22325fe bf6c28a5ff3561252a6dcade63632f54 { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01188.RNA-Seq.R2_L004.Tbm C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGTCTGCG-TTCACAAT_S13_L004_R2_001.fastq.gz 4168713236 FASTQ R2_L004 unaligned CPTAC3 716b4d9b-71cf-41ad-828b-d289d663f9bc eedbe4404faf802761e0a0f7af59f46a { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01188.RNA-Seq.transcriptome.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 c4ccddac-6605-48f1-9033-c3b0cec321bc.rna_seq.transcriptome.gdc_realn.bam 9542779459 BAM transcriptome harmonized CPTAC3 f630eeb8-b5bb-4813-98d8-02f9bba028c1 4548f44ce081a6f815a3d3681bcf6283 { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01188.RNA-Seq.chimeric.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 811151d8-e83a-4a01-beda-fc030803b2b9.rna_seq.chimeric.gdc_realn.bam 78291770 BAM chimeric harmonized CPTAC3 f6d2dea8-8d00-4100-829d-f6118be15db9 0b7427e92237825e4791c14c9f00ab06 { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01188.RNA-Seq.genomic.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 811151d8-e83a-4a01-beda-fc030803b2b9.rna_seq.genomic.gdc_realn.bam 7695454826 BAM genomic harmonized CPTAC3 5654dad6-c513-4469-b5ab-9b4ea7d44b4f 92f4eff4953a144a166827407e51e7da { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01188.RNA-Seq.R1_L004.Tbm C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGTCTGCG-TTCACAAT_S13_L004_R1_001.fastq.gz 3897699936 FASTQ R1_L004 unaligned CPTAC3 65a13af0-794a-4f67-954b-26d8b22325fe bf6c28a5ff3561252a6dcade63632f54 { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-01188.RNA-Seq.R2_L004.Tbm C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGTCTGCG-TTCACAAT_S13_L004_R2_001.fastq.gz 4168713236 FASTQ R2_L004 unaligned CPTAC3 716b4d9b-71cf-41ad-828b-d289d663f9bc eedbe4404faf802761e0a0f7af59f46a { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-01188.RNA-Seq.transcriptome.Tbm.hg38 C3L-01188 AML RNA-Seq tumor_bone_marrow CPT0338480002 811151d8-e83a-4a01-beda-fc030803b2b9.rna_seq.transcriptome.gdc_realn.bam 11090586487 BAM transcriptome harmonized CPTAC3 7984b743-45a7-44b8-8832-89be083c290c f6faf59c526937348257172c9aeb0a19 { 'aliquot_tag': 'ALQ_d9c54277', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01188.WGS.Nbc C3L-01188 AML WGS buccal_normal CPT0338520002 CPT0338520002.WholeGenome.RP-2158.bam 49609623456 BAM aligned CPTAC3 9422e5ad-348f-40cd-a879-d8c6f0a9a302 4a9722d2a6d63a8296dc03ba21ac4cf0 { 'aliquot_tag': 'ALQ_58298973', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01188.WGS.Nbc.hg38 C3L-01188 AML WGS buccal_normal CPT0338520002 3bdffbda-35b4-4a13-a102-3979d363b53d_wgs_gdc_realn.bam 147582359097 BAM harmonized CPTAC3 f50beef2-41e8-4cab-828a-3d2adc6d21eb 86f513926e55d6650a76d0c8325b0277 { 'aliquot_tag': 'ALQ_58298973', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01188.WGS.Tbm C3L-01188 AML WGS tumor_bone_marrow CPT0338510002 CPT0338510002.WholeGenome.RP-2158.bam 49742579452 BAM aligned CPTAC3 fbf77026-e596-45fa-9ca6-9d851fde1ec7 1a65f4de79e172f851a016b2a80ec690 { 'aliquot_tag': 'ALQ_1f89f3a3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01188.WGS.Tbm.hg38 C3L-01188 AML WGS tumor_bone_marrow CPT0338510002 52d511e6-0272-45e6-a597-06aae5d26918_wgs_gdc_realn.bam 151199148802 BAM harmonized CPTAC3 443d5fcc-56db-4bb1-8765-0b2ae5399577 cb608e06ba219880bd6b43c26ce96ddc { 'aliquot_tag': 'ALQ_1f89f3a3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01188.WXS.Nbc C3L-01188 AML WXS buccal_normal CPT0338520002 CPT0338520002.WholeExome.RP-1303.bam 20317600042 BAM aligned CPTAC3 f37ee0e5-4b23-4a2f-bf96-333435ef3ea2 6add0a75b800b2fb442511c02b0d8cbe { 'aliquot_tag': 'ALQ_58298973', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01188.WXS.Nbc.hg38 C3L-01188 AML WXS buccal_normal CPT0338520002 3bdffbda-35b4-4a13-a102-3979d363b53d_wxs_gdc_realn.bam 27611894401 BAM harmonized CPTAC3 ff371b49-e65e-4800-bbe1-788160cc302d 04c86f103ae901f0a16f1e5f5b84ce47 { 'aliquot_tag': 'ALQ_58298973', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01188.WXS.Tbm C3L-01188 AML WXS tumor_bone_marrow CPT0338510002 CPT0338510002.WholeExome.RP-1303.bam 21800123676 BAM aligned CPTAC3 96328a39-5c15-45ab-bed0-86402faf7893 9145b511fb9791cbefb1cbc856c8b864 { 'aliquot_tag': 'ALQ_1f89f3a3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01188.WXS.Tbm.hg38 C3L-01188 AML WXS tumor_bone_marrow CPT0338510002 52d511e6-0272-45e6-a597-06aae5d26918_wxs_gdc_realn.bam 29793720760 BAM harmonized CPTAC3 f56befc9-9d5c-4c40-8602-a1cd336fbb93 527dab6e7665e461a19c18b9b4f197d6 { 'aliquot_tag': 'ALQ_1f89f3a3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01201.MethArray.Green.Tbm C3L-01201 AML Methylation Array tumor_bone_marrow CPT0325890002 205555380136_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fc91136f-88dd-45f7-b8a3-99da25f997a5 31dd9db67e75561365d165f9d0ba23f6 { 'aliquot_tag': 'ALQ_3e1acae2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01201.MethArray.Red.Tbm C3L-01201 AML Methylation Array tumor_bone_marrow CPT0325890002 205555380136_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 489fcf92-cd4a-4d7b-9bd3-f7e9dba97221 aa51471d278fe4915769157b7abf2147 { 'aliquot_tag': 'ALQ_3e1acae2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01201.miRNA-Seq.Tbm C3L-01201 AML miRNA-Seq tumor_bone_marrow CPT0325900002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTAGAG_S14_L001_R1_001.unaln.bam 359438691 BAM unaligned CPTAC3 a082c4d8-77aa-4cde-95cd-71bb441de330 3bfd471b3a4d4cff7876012eac3826dd { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01201.RNA-Seq.chimeric.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.chimeric.gdc_realn.bam 111970743 BAM chimeric harmonized CPTAC3 7806c357-1784-400e-a42d-8b72723db90e 7b8ef01095acdbb6f6115768eabf4732 { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01201.RNA-Seq.genomic.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.genomic.gdc_realn.bam 7486083855 BAM genomic harmonized CPTAC3 7bb80ab7-6993-408b-ad66-121a94b4094e 557d24bf4e61660cc5f4f288310fc382 { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01201.RNA-Seq.R1_L004.Tbm C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 210319_UNC31-K00269_0296_AHKT37BBXY_ACACTAAG-ATCCATAT_S13_L004_R1_001.fastq.gz 3769469819 FASTQ R1_L004 unaligned CPTAC3 1ee6cfbe-280d-411c-bf00-f541cc3ff6db 3fe22e7f0d3d31675aa26029e7ad09fd { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01201.RNA-Seq.R2_L004.Tbm C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 210319_UNC31-K00269_0296_AHKT37BBXY_ACACTAAG-ATCCATAT_S13_L004_R2_001.fastq.gz 3999973406 FASTQ R2_L004 unaligned CPTAC3 02d60360-a6a6-409f-bf80-438b462b4daf 5231906217fed12fa6b697f3117e4b70 { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01201.RNA-Seq.transcriptome.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.transcriptome.gdc_realn.bam 9225521000 BAM transcriptome harmonized CPTAC3 dea2ac49-384e-4541-9b3d-a0145020c2f2 6b7fb6626141775db5e7995b908f6a5f { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01201.miRNA-Seq.Tbm.hg38 C3L-01201 AML miRNA-Seq tumor_bone_marrow CPT0325900002 3e12d953-0f85-4566-852e-fcb6f9e0b131_mirnaseq_gdc_realn.bam 377852908 BAM harmonized CPTAC3 8d6e447d-2937-48e2-969f-52c9b29a07f1 1dce1ded02dba5a1104f50c9924d4df1 { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01201.RNA-Seq.chimeric.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.chimeric.gdc_realn.bam 111970743 BAM chimeric harmonized CPTAC3 e5eab3cf-25fe-4c70-893c-19a4b7826949 7b8ef01095acdbb6f6115768eabf4732 { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01201.RNA-Seq.genomic.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.genomic.gdc_realn.bam 7486083855 BAM genomic harmonized CPTAC3 68b2ccb5-2e54-4666-b93b-27c8bd0e1eb2 557d24bf4e61660cc5f4f288310fc382 { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01201.RNA-Seq.R1_L004.Tbm C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 210319_UNC31-K00269_0296_AHKT37BBXY_ACACTAAG-ATCCATAT_S13_L004_R1_001.fastq.gz 3769469819 FASTQ R1_L004 unaligned CPTAC3 1ee6cfbe-280d-411c-bf00-f541cc3ff6db 3fe22e7f0d3d31675aa26029e7ad09fd { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-01201.RNA-Seq.R2_L004.Tbm C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 210319_UNC31-K00269_0296_AHKT37BBXY_ACACTAAG-ATCCATAT_S13_L004_R2_001.fastq.gz 3999973406 FASTQ R2_L004 unaligned CPTAC3 02d60360-a6a6-409f-bf80-438b462b4daf 5231906217fed12fa6b697f3117e4b70 { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-01201.RNA-Seq.transcriptome.Tbm.hg38 C3L-01201 AML RNA-Seq tumor_bone_marrow CPT0325900002 8f2b2b68-7de4-4ad7-b356-167af7c49ba6.rna_seq.transcriptome.gdc_realn.bam 9225521000 BAM transcriptome harmonized CPTAC3 83e0ba3a-6c81-4aa5-9dfe-c118c39cff23 6b7fb6626141775db5e7995b908f6a5f { 'aliquot_tag': 'ALQ_f8567b36', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01201.WGS.Tbm C3L-01201 AML WGS tumor_bone_marrow CPT0325890002 CPT0325890002.WholeGenome.RP-2158.bam 51898633882 BAM aligned CPTAC3 e2abcbb2-9bb3-43ed-90dc-8503740d56d8 34e304e13b731b5b861a0163192c9203 { 'aliquot_tag': 'ALQ_3e1acae2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01201.WGS.Tbm.hg38 C3L-01201 AML WGS tumor_bone_marrow CPT0325890002 21f6264c-abd6-4c1f-9874-2b8fffda42c9_wgs_gdc_realn.bam 155628477659 BAM harmonized CPTAC3 5127a5c1-38bf-47ea-82da-200b0fb36795 c20fab3db3a39a0c8989fd182ff140c0 { 'aliquot_tag': 'ALQ_3e1acae2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01201.WXS.Nbc C3L-01201 AML WXS buccal_normal CPT0325970003 CPT0325970003.WholeExome.RP-1303.bam 24228241310 BAM aligned CPTAC3 c4a364ad-618c-4685-a2e1-cd988655c576 ac8017b0ce7e6d064f6d56903ab09fd8 { 'aliquot_tag': 'ALQ_3d7197b0', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01201.WXS.Nbc.hg38 C3L-01201 AML WXS buccal_normal CPT0325970003 04a42e33-ba61-4888-9dc5-0b8abd04d924_wxs_gdc_realn.bam 33562656252 BAM harmonized CPTAC3 606c41b0-38ac-411d-81a7-5cb0ab967a8e 430cd31d3df995155d6bc119fcc2955c { 'aliquot_tag': 'ALQ_3d7197b0', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01201.WXS.Tbm C3L-01201 AML WXS tumor_bone_marrow CPT0325890002 CPT0325890002.WholeExome.RP-1303.bam 21901032174 BAM aligned CPTAC3 68682607-d80c-4590-8a6b-d98d6a061931 45fc365b1c435df4a2440f90d5edf5b2 { 'aliquot_tag': 'ALQ_3e1acae2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01201.WXS.Tbm.hg38 C3L-01201 AML WXS tumor_bone_marrow CPT0325890002 21f6264c-abd6-4c1f-9874-2b8fffda42c9_wxs_gdc_realn.bam 30710997531 BAM harmonized CPTAC3 34f6ef17-ed26-477a-bc53-301f862bd5bd 9cdeced8d69b40c75e8a9382eae31945 { 'aliquot_tag': 'ALQ_3e1acae2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01202.MethArray.Green.Tbm C3L-01202 AML Methylation Array tumor_bone_marrow CPT0165960002 203561450027_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 62175ef4-cfcd-4364-8e2c-37184338e00b 81fc5e9bc94d063007e4d4d5418b5cd8 { 'aliquot_tag': 'ALQ_ddaaa8ea', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01202.MethArray.Red.Tbm C3L-01202 AML Methylation Array tumor_bone_marrow CPT0165960002 203561450027_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 c3f19b2b-2f81-4cc7-9858-c6497256b3b5 e0fb1f3bd9170c56cc3c1eef06cb84e1 { 'aliquot_tag': 'ALQ_ddaaa8ea', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01202.miRNA-Seq.Tbm C3L-01202 AML miRNA-Seq tumor_bone_marrow CPT0165970002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGGCC_S20_L001_R1_001.unaln.bam 178549955 BAM unaligned CPTAC3 e4e9be38-fe77-43fd-b134-d38b87ee7fae 006034522f39f43e180a70fff60bef3b { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01202.miRNA-Seq.Tbm.hg38 C3L-01202 AML miRNA-Seq tumor_bone_marrow CPT0165970002 698980c1-3c87-457e-8702-d7201948ffa8_mirnaseq_gdc_realn.bam 198988702 BAM harmonized CPTAC3 6d8f0390-9547-4a31-ae2b-7fc8c064ad52 268c6384e8a09296cbeadf6e74628da3 { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01202.RNA-Seq.chimeric.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 5909e34b-4205-40ad-92b0-c972a0e22c38.rna_seq.chimeric.gdc_realn.bam 31893672 BAM chimeric harmonized CPTAC3 dc1851e6-b83f-4a41-b5de-1b5cc6d6ab40 faec8ee239840f9e3e42face43d0bdcb { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01202.RNA-Seq.genomic.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 5909e34b-4205-40ad-92b0-c972a0e22c38.rna_seq.genomic.gdc_realn.bam 8475587318 BAM genomic harmonized CPTAC3 29c613f3-0157-4f75-bc67-60369104757c 472468db55fd4188cb55bf6a5d3adde7 { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01202.RNA-Seq.R1_L006.Tbm C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCACGGAC-GTCTCGCA_S35_L006_R1_001.fastq.gz 4009177377 FASTQ R1_L006 unaligned CPTAC3 671428b2-fc87-432e-9bbc-d2690fea4ec0 fa097c1134dea83e06b4cebb1e22cde2 { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01202.RNA-Seq.R2_L006.Tbm C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCACGGAC-GTCTCGCA_S35_L006_R2_001.fastq.gz 4733260248 FASTQ R2_L006 unaligned CPTAC3 ca4c00d1-c8a6-4326-8e11-c02894955b93 df65615b341165f0068200216b709488 { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01202.RNA-Seq.transcriptome.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 5909e34b-4205-40ad-92b0-c972a0e22c38.rna_seq.transcriptome.gdc_realn.bam 8171507095 BAM transcriptome harmonized CPTAC3 2babca51-bd4a-4ef0-b15e-7a70d85b7afc e5906428769d7a314b239f8d5d3376f1 { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01202.RNA-Seq.chimeric.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 14b7cb4f-bd00-4c14-8bcf-6070fb6f45c4.rna_seq.chimeric.gdc_realn.bam 31884098 BAM chimeric harmonized CPTAC3 0b0fcf3d-7e8a-4dc6-856e-6c86f129ef7c 8cf19f3f038a2c6c6334b566426f7b04 { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01202.RNA-Seq.genomic.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 14b7cb4f-bd00-4c14-8bcf-6070fb6f45c4.rna_seq.genomic.gdc_realn.bam 8476261747 BAM genomic harmonized CPTAC3 14b0cfaa-c6e7-4ee9-84b6-b4c7efe91ae1 c7e367bd3d7559020a497371f6e55b46 { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01202.RNA-Seq.R1_L006.Tbm C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCACGGAC-GTCTCGCA_S35_L006_R1_001.fastq.gz 4009177377 FASTQ R1_L006 unaligned CPTAC3 671428b2-fc87-432e-9bbc-d2690fea4ec0 fa097c1134dea83e06b4cebb1e22cde2 { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-01202.RNA-Seq.R2_L006.Tbm C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCACGGAC-GTCTCGCA_S35_L006_R2_001.fastq.gz 4733260248 FASTQ R2_L006 unaligned CPTAC3 ca4c00d1-c8a6-4326-8e11-c02894955b93 df65615b341165f0068200216b709488 { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-01202.RNA-Seq.transcriptome.Tbm.hg38 C3L-01202 AML RNA-Seq tumor_bone_marrow CPT0165970002 14b7cb4f-bd00-4c14-8bcf-6070fb6f45c4.rna_seq.transcriptome.gdc_realn.bam 9295673688 BAM transcriptome harmonized CPTAC3 afd7c1e9-b6b1-4010-ae3c-5a4484476c62 d711dc1bac7c4c558fd0526fbfe82071 { 'aliquot_tag': 'ALQ_e0ca815a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01202.WGS.Nbc C3L-01202 AML WGS buccal_normal CPT0166020003 CPT0166020003.WholeGenome.RP-1303.bam 71226752030 BAM aligned CPTAC3 212831ff-a243-416b-8d61-46dd8cdbcb8a 3aebfbd36374b266376d5ef29c29bc81 { 'aliquot_tag': 'ALQ_49ca75e9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01202.WGS.Nbc.hg38 C3L-01202 AML WGS buccal_normal CPT0166020003 1bb452c0-b720-4f49-a565-b4aae0d35af8_wgs_gdc_realn.bam 105629343475 BAM harmonized CPTAC3 dc06e74b-457a-466a-96eb-bae0b949c050 101c9835a06e028bad900c5d27d41870 { 'aliquot_tag': 'ALQ_49ca75e9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01202.WGS.Tbm C3L-01202 AML WGS tumor_bone_marrow CPT0165960002 CPT0165960002.WholeGenome.RP-1303.bam 66510350843 BAM aligned CPTAC3 edeaa0f0-0b05-4fa0-86c2-18f3ca66753e eed6ff9ce3099c5583156f0c660d7fd2 { 'aliquot_tag': 'ALQ_ddaaa8ea', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -6031,11 +6596,11 @@ C3L-01205.MethArray.Green.Tbm C3L-01205 AML Methylation Array tumor_bone_marrow C3L-01205.MethArray.Red.Tbm C3L-01205 AML Methylation Array tumor_bone_marrow CPT0166060002 203561450020_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 8c24098b-aa96-4bee-8f5b-a25f970d2a0a 5518c59ba65114de794c0bde6ee1ab70 { 'aliquot_tag': 'ALQ_cb4de3bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01205.miRNA-Seq.Tbm C3L-01205 AML miRNA-Seq tumor_bone_marrow CPT0166070002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTTTCG_S21_L001_R1_001.unaln.bam 149405344 BAM unaligned CPTAC3 3785387e-4d09-4f75-aa0c-231f7e6f687c 8c5516987f8a77a2b25ad10f4c3814c0 { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01205.miRNA-Seq.Tbm.hg38 C3L-01205 AML miRNA-Seq tumor_bone_marrow CPT0166070002 98e6da3e-258a-4ed5-97e6-d569372a7ee3_mirnaseq_gdc_realn.bam 167273187 BAM harmonized CPTAC3 0a970929-4ebc-45cb-ad12-5b7b5f8448d6 8a888b4514c1b6b0ee8cf7892cb48bf9 { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01205.RNA-Seq.chimeric.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 cc257500-14b4-4b81-a7e1-dbedeaa0d0cc.rna_seq.chimeric.gdc_realn.bam 30319165 BAM chimeric harmonized CPTAC3 2c4d3acc-fa49-49ce-b51e-4f4b3e284cb6 7f8fd1d9cc817a2bd6342b0f3f6591a7 { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01205.RNA-Seq.genomic.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 cc257500-14b4-4b81-a7e1-dbedeaa0d0cc.rna_seq.genomic.gdc_realn.bam 9912114874 BAM genomic harmonized CPTAC3 45a95835-3e7a-4bd5-8e4b-d70a6b4cc314 1e92d4ffb7e19a43728e2891003efabe { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01205.RNA-Seq.R1_L007.Tbm C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 190522_UNC31-K00269_0217_AH7F5MBBXY_GGTACCTT-AAGACGTC_S39_L007_R1_001.fastq.gz 4121313094 FASTQ R1_L007 unaligned CPTAC3 ea097e68-4b09-4511-b477-a23aba708ea8 bf258dd5f35bd10ca355d6c697401a10 { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01205.RNA-Seq.R2_L007.Tbm C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 190522_UNC31-K00269_0217_AH7F5MBBXY_GGTACCTT-AAGACGTC_S39_L007_R2_001.fastq.gz 4699564011 FASTQ R2_L007 unaligned CPTAC3 204844aa-3ac0-4c3d-9e14-df05ac393091 15c740f7583e9bd77ce98c2077c00971 { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01205.RNA-Seq.transcriptome.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 cc257500-14b4-4b81-a7e1-dbedeaa0d0cc.rna_seq.transcriptome.gdc_realn.bam 8838013254 BAM transcriptome harmonized CPTAC3 e0340b76-a3e4-4123-9acd-5434635675aa 4a510f8f7a00992600bf850d7bc49c13 { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01205.RNA-Seq.chimeric.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 5fc25390-a17a-42a2-a4a2-5bbceb97c9fa.rna_seq.chimeric.gdc_realn.bam 30297795 BAM chimeric harmonized CPTAC3 d156b2f0-8607-48e2-a571-a36cffea66e1 c98bd925e01c0523c72c8b3a0aa91300 { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01205.RNA-Seq.genomic.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 5fc25390-a17a-42a2-a4a2-5bbceb97c9fa.rna_seq.genomic.gdc_realn.bam 9912729752 BAM genomic harmonized CPTAC3 6590ba57-8695-4126-924c-6e9d488f990a b986eed777248df1a93b270ecd3c5add { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01205.RNA-Seq.R1_L007.Tbm C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 190522_UNC31-K00269_0217_AH7F5MBBXY_GGTACCTT-AAGACGTC_S39_L007_R1_001.fastq.gz 4121313094 FASTQ R1_L007 unaligned CPTAC3 ea097e68-4b09-4511-b477-a23aba708ea8 bf258dd5f35bd10ca355d6c697401a10 { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-01205.RNA-Seq.R2_L007.Tbm C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 190522_UNC31-K00269_0217_AH7F5MBBXY_GGTACCTT-AAGACGTC_S39_L007_R2_001.fastq.gz 4699564011 FASTQ R2_L007 unaligned CPTAC3 204844aa-3ac0-4c3d-9e14-df05ac393091 15c740f7583e9bd77ce98c2077c00971 { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-01205.RNA-Seq.transcriptome.Tbm.hg38 C3L-01205 AML RNA-Seq tumor_bone_marrow CPT0166070002 5fc25390-a17a-42a2-a4a2-5bbceb97c9fa.rna_seq.transcriptome.gdc_realn.bam 10093508801 BAM transcriptome harmonized CPTAC3 2e96b365-7865-4aa8-a3d6-e9bbacf340b5 2e63c7017b08e4640ee7a98bbed66844 { 'aliquot_tag': 'ALQ_f62dca0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01205.WGS.Nbc C3L-01205 AML WGS buccal_normal CPT0166100002 CPT0166100002.WholeGenome.RP-1303.bam 92186318736 BAM aligned CPTAC3 a5bffa45-3250-4de7-a007-40c26069060d 2ee73e5ca5aebc0ad28fd602b32d28d0 { 'aliquot_tag': 'ALQ_8f51c5ba', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01205.WGS.Nbc.hg38 C3L-01205 AML WGS buccal_normal CPT0166100002 63ed98ef-951d-4914-b17f-d6728cb962f3_wgs_gdc_realn.bam 181015257320 BAM harmonized CPTAC3 78af2650-07ba-4252-853f-22a0e4f310d5 d21259e224e8fb6d5d92e094ca01d0af { 'aliquot_tag': 'ALQ_8f51c5ba', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01205.WGS.Tbm C3L-01205 AML WGS tumor_bone_marrow CPT0166060002 CPT0166060002.WholeGenome.RP-1303.bam 65860631035 BAM aligned CPTAC3 fd90b68b-d860-4e1d-9fef-f706b5b514e8 9693b703b858e4181c3e63529295753e { 'aliquot_tag': 'ALQ_cb4de3bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -6048,11 +6613,11 @@ C3L-01210.MethArray.Green.Tbm C3L-01210 AML Methylation Array tumor_bone_marrow C3L-01210.MethArray.Red.Tbm C3L-01210 AML Methylation Array tumor_bone_marrow CPT0166140002 203561450106_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 47bb6375-8859-4fab-b190-62737a6bf05c b7863d9d3a9c05a8691c4e816aa48acd { 'aliquot_tag': 'ALQ_7ad1637a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01210.miRNA-Seq.Tbm C3L-01210 AML miRNA-Seq tumor_bone_marrow CPT0166150002 190508_UNC31-K00269_0215_BH7FYKBBXY_CGTACG_S22_L001_R1_001.unaln.bam 192662894 BAM unaligned CPTAC3 de24c088-fdd7-4713-99a7-63cfe077d51e 6116c5d190917008c67a6961820419a1 { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01210.miRNA-Seq.Tbm.hg38 C3L-01210 AML miRNA-Seq tumor_bone_marrow CPT0166150002 cd251c3c-9410-471b-a3fe-d52bba236230_mirnaseq_gdc_realn.bam 214569311 BAM harmonized CPTAC3 ce541b35-86af-467f-9d50-bbf0d5276ebd 5f975b0c449b0287826db3f98b0af0ae { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01210.RNA-Seq.chimeric.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 8eb26617-0c7c-4733-9cf4-3a974a33cae1.rna_seq.chimeric.gdc_realn.bam 26126849 BAM chimeric harmonized CPTAC3 3ef2a559-fffc-4172-9f0d-ca531eda6ee0 fd1c9dec4b1aa691c8dd322fb7fc2c18 { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01210.RNA-Seq.genomic.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 8eb26617-0c7c-4733-9cf4-3a974a33cae1.rna_seq.genomic.gdc_realn.bam 6664226532 BAM genomic harmonized CPTAC3 448a4532-2b90-4c34-8437-7d7a08873b10 85c9d6b49001e50ba8083dfd5e4e0f07 { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01210.RNA-Seq.R1_L007.Tbm C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 190522_UNC31-K00269_0217_AH7F5MBBXY_AACGTTCC-GGAGTACT_S40_L007_R1_001.fastq.gz 3096308737 FASTQ R1_L007 unaligned CPTAC3 ee4ac6f0-8979-4910-89d3-2ce3de279076 bf329ee1ac4dc3d56d30ee1020274794 { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01210.RNA-Seq.R2_L007.Tbm C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 190522_UNC31-K00269_0217_AH7F5MBBXY_AACGTTCC-GGAGTACT_S40_L007_R2_001.fastq.gz 3567220988 FASTQ R2_L007 unaligned CPTAC3 23dd19d7-e29c-458d-b8fb-fc639375381d 28fe84bb1afedb1313b5611cb734f29c { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01210.RNA-Seq.transcriptome.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 8eb26617-0c7c-4733-9cf4-3a974a33cae1.rna_seq.transcriptome.gdc_realn.bam 7460634011 BAM transcriptome harmonized CPTAC3 f8fac82a-326b-4a0b-b05d-99790d8081fe 03f50fccee2421fd5363a76380a5a121 { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01210.RNA-Seq.chimeric.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 158c1b5c-7004-47e2-adc6-14ec0231db17.rna_seq.chimeric.gdc_realn.bam 26113404 BAM chimeric harmonized CPTAC3 a88f9953-f024-4fdb-a677-1df1ec4f353c 97ddce89bd1f6f781ae34256a2b74c31 { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01210.RNA-Seq.genomic.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 158c1b5c-7004-47e2-adc6-14ec0231db17.rna_seq.genomic.gdc_realn.bam 6664865158 BAM genomic harmonized CPTAC3 18a2cc49-e01f-46dc-81ae-84d7b780c122 e25b5c6d4d5c997ba26944ef1236e878 { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01210.RNA-Seq.R1_L007.Tbm C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 190522_UNC31-K00269_0217_AH7F5MBBXY_AACGTTCC-GGAGTACT_S40_L007_R1_001.fastq.gz 3096308737 FASTQ R1_L007 unaligned CPTAC3 ee4ac6f0-8979-4910-89d3-2ce3de279076 bf329ee1ac4dc3d56d30ee1020274794 { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-01210.RNA-Seq.R2_L007.Tbm C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 190522_UNC31-K00269_0217_AH7F5MBBXY_AACGTTCC-GGAGTACT_S40_L007_R2_001.fastq.gz 3567220988 FASTQ R2_L007 unaligned CPTAC3 23dd19d7-e29c-458d-b8fb-fc639375381d 28fe84bb1afedb1313b5611cb734f29c { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-01210.RNA-Seq.transcriptome.Tbm.hg38 C3L-01210 AML RNA-Seq tumor_bone_marrow CPT0166150002 158c1b5c-7004-47e2-adc6-14ec0231db17.rna_seq.transcriptome.gdc_realn.bam 8462795790 BAM transcriptome harmonized CPTAC3 a78e6e64-5256-4509-a4bd-cd0937f33733 c79a0968ef0640e4fac77ef664660e24 { 'aliquot_tag': 'ALQ_47b14aca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01210.WGS.Nbc C3L-01210 AML WGS buccal_normal CPT0166180003 CPT0166180003.WholeGenome.RP-1303.bam 95970148092 BAM aligned CPTAC3 0584d4d3-1164-4b64-80ca-86ebc698e668 a6b7cc95a4aba6a9d0bb0b4e36a50268 { 'aliquot_tag': 'ALQ_c826beed', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01210.WGS.Nbc.hg38 C3L-01210 AML WGS buccal_normal CPT0166180003 d211af53-0fe2-4296-986b-b469767aa8d4_wgs_gdc_realn.bam 147740708513 BAM harmonized CPTAC3 158d759d-6b3c-4dc3-a3d7-59930a885d0a 60b8162c037ac9d4746ea4f1ee525beb { 'aliquot_tag': 'ALQ_c826beed', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01210.WGS.Tbm C3L-01210 AML WGS tumor_bone_marrow CPT0166140002 CPT0166140002.WholeGenome.RP-1303.bam 71802167729 BAM aligned CPTAC3 3f642c86-8145-4b69-bec5-a1a769cfd6f9 0891f7206b110fca79fa206926d4e7bc { 'aliquot_tag': 'ALQ_7ad1637a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -6066,11 +6631,11 @@ C3L-01232.MethArray.Red.T C3L-01232 GBM Methylation Array tumor CPT0239440006 20 C3L-01232.miRNA-Seq.T C3L-01232 GBM miRNA-Seq tumor CPT0239440013 200403_UNC31-K00269_0274_AHCF7GBBXY_TCATTC_S21_L001_R1_001.unaln.bam 178837862 BAM unaligned CPTAC3 8bd3ce56-9e85-4c4c-a91c-d38d324cdcdc 8fcb897efbc5f2b729c1ba23854bdeef { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } C3L-01232.miRNA-Seq.T C3L-01232 GBM miRNA-Seq tumor CPT0239440013 200526_UNC32-K00270_0248_BHH7WFBBXY_TCATTC_S18_L001_R1_001.unaln.bam 221470799 BAM unaligned CPTAC3 b69ad4d2-7b40-4777-8d11-b5aa1a525c36 6d53a2b2d6a7c1f97432fc15d6f1437d { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } C3L-01232.miRNA-Seq.T.hg38 C3L-01232 GBM miRNA-Seq tumor CPT0239440013 d7d2ec7d-2dd5-4495-a268-59b938e3b56a_mirnaseq_gdc_realn.bam 448941138 BAM harmonized CPTAC3 44b43e7e-3843-4584-9693-3992f1243359 404f58d97dd3fc86c55bebc9538d1c9a { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } -C3L-01232.RNA-Seq.chimeric.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 8506b8cb-e38d-4c37-8ab5-a2d8667967b8.rna_seq.chimeric.gdc_realn.bam 25159354 BAM chimeric harmonized CPTAC3 aaf3f9b6-04ae-49d0-888a-be5e2d0d5be6 193130aae47a50c2d0d604e1ce3fcc03 { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } -C3L-01232.RNA-Seq.genomic.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 8506b8cb-e38d-4c37-8ab5-a2d8667967b8.rna_seq.genomic.gdc_realn.bam 7909474308 BAM genomic harmonized CPTAC3 01737134-1c8b-48aa-8cba-defbd0548e5f 9fabba85043e3f372478cfad03340059 { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } -C3L-01232.RNA-Seq.R1_L005.T C3L-01232 GBM RNA-Seq tumor CPT0239440013 200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R1_001.fastq.gz 3741665722 FASTQ R1_L005 unaligned CPTAC3 1b412bf7-dfe6-46ce-8351-540dfc2698d5 ca430e7624c7f4e9558a2dfedf55dc57 { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } -C3L-01232.RNA-Seq.R2_L005.T C3L-01232 GBM RNA-Seq tumor CPT0239440013 200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R2_001.fastq.gz 4101913109 FASTQ R2_L005 unaligned CPTAC3 64276f84-695c-4a6a-bde8-0b0378f17656 1d8674b8ac8a9674ea77abd5d143bf6a { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } -C3L-01232.RNA-Seq.transcriptome.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 8506b8cb-e38d-4c37-8ab5-a2d8667967b8.rna_seq.transcriptome.gdc_realn.bam 8255756368 BAM transcriptome harmonized CPTAC3 c496e637-80ae-47fc-8fd2-efe304533cb1 35cd53ac5a8358feb99dac19e87f62d6 { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } +C3L-01232.RNA-Seq.chimeric.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 4442ed8c-7c3a-423c-9f23-6c5233070aad.rna_seq.chimeric.gdc_realn.bam 25146666 BAM chimeric harmonized CPTAC3 e14a8f1b-705a-4e70-a4c0-e7b1e071e3ae 3566bac8655a02ec6107fee365f5ec75 { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } +C3L-01232.RNA-Seq.genomic.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 4442ed8c-7c3a-423c-9f23-6c5233070aad.rna_seq.genomic.gdc_realn.bam 7910483374 BAM genomic harmonized CPTAC3 e41c6d41-29dc-478d-b421-d6e3cbe45ab9 cdc55996c4547a7a6823d69cee1f2242 { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } +C3L-01232.RNA-Seq.R1_L005.T C3L-01232 GBM RNA-Seq tumor CPT0239440013 200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R1_001.fastq.gz 3741665722 FASTQ R1_L005 unaligned CPTAC3 1b412bf7-dfe6-46ce-8351-540dfc2698d5 ca430e7624c7f4e9558a2dfedf55dc57 { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01232.RNA-Seq.R2_L005.T C3L-01232 GBM RNA-Seq tumor CPT0239440013 200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R2_001.fastq.gz 4101913109 FASTQ R2_L005 unaligned CPTAC3 64276f84-695c-4a6a-bde8-0b0378f17656 1d8674b8ac8a9674ea77abd5d143bf6a { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01232.RNA-Seq.transcriptome.T.hg38 C3L-01232 GBM RNA-Seq tumor CPT0239440013 4442ed8c-7c3a-423c-9f23-6c5233070aad.rna_seq.transcriptome.gdc_realn.bam 9488608876 BAM transcriptome harmonized CPTAC3 0fd36f42-f9b2-4db8-8a91-1f5a8fe88e90 ce7b4c7693637e6e23dd0998cc9b5afe { 'aliquot_tag': 'ALQ_c325b156', 'gdc_sample_type': 'Primary Tumor' } C3L-01232.WGS.N C3L-01232 GBM WGS blood_normal CPT0240430002 CPT0240430002.WholeGenome.RP-2158.bam 23484726875 BAM aligned CPTAC3 c3630728-631d-4c32-b3b8-4d764a9edc96 0501a0a077c2879fc992c60b8710eed5 { 'aliquot_tag': 'ALQ_8044205b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01232.WGS.N.hg38 C3L-01232 GBM WGS blood_normal CPT0240430002 54352f31-de32-4a52-b0c0-1ab882496fc3_wgs_gdc_realn.bam 67565943172 BAM harmonized CPTAC3 c7777e0c-2447-4d47-aa47-e65bed9a8e47 9d4d7f696d14065132ceb994591df7fd { 'aliquot_tag': 'ALQ_8044205b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01232.WGS.T C3L-01232 GBM WGS tumor CPT0239440006 CPT0239440006.WholeGenome.RP-2158.bam 25689260792 BAM aligned CPTAC3 62c0cb54-b429-4b6d-b1ef-4f0217a50eb0 6a8016adbd37a06820918b2e009b4f90 { 'aliquot_tag': 'ALQ_aa547498', 'gdc_sample_type': 'Primary Tumor' } @@ -6089,16 +6654,19 @@ C3L-01237.miRNA-Seq.T C3L-01237 HNSCC miRNA-Seq tumor CPT0199820009 190228_UNC32 C3L-01237.miRNA-Seq.T.hg38 C3L-01237 HNSCC miRNA-Seq tumor CPT0199820009 eac8c70e-50cf-4c55-84da-0b782bb9d4b9_mirnaseq_gdc_realn.bam 212777769 BAM harmonized CPTAC3 a0451139-539c-4c25-a84a-fdcbeb2aeb47 5490fdea59b3bad28ad91b989cef5f83 { 'aliquot_tag': 'ALQ_6a247cdf', 'gdc_sample_type': 'Primary Tumor' } C3L-01237.RNA-Seq.chimeric.A.hg38 C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 bc8dc68b-f754-45d6-b9a2-6e679a11a030.rna_seq.chimeric.gdc_realn.bam 175136593 BAM chimeric harmonized CPTAC3 e1f68fc9-ac06-41b8-830b-6a6a1f1fc57f b8166404a55dc1c2a3c8b6a3f973bea9 { 'aliquot_tag': 'ALQ_5744556f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01237.RNA-Seq.chimeric.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 c3c7f008-08ce-4b39-98d2-1c0734b76dc2.rna_seq.chimeric.gdc_realn.bam 312811256 BAM chimeric harmonized CPTAC3 f474f41d-cc65-46da-b2c6-c5bc3e9fcca2 34f94dfc013bb0c4656cd0f95e6f246f { 'aliquot_tag': 'ALQ_6a247cdf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01237.RNA-Seq.genomic.A.hg38 C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 bc8dc68b-f754-45d6-b9a2-6e679a11a030.rna_seq.genomic.gdc_realn.bam 7925658616 BAM genomic harmonized CPTAC3 7ed08676-7fe8-4e52-873b-99b043ee8625 cec675ee5d95f1bccfaa60558efba72e { 'aliquot_tag': 'ALQ_5744556f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01237.RNA-Seq.genomic.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 c3c7f008-08ce-4b39-98d2-1c0734b76dc2.rna_seq.genomic.gdc_realn.bam 7458178489 BAM genomic harmonized CPTAC3 2b669a05-09b2-49cf-ae86-6498ad279858 6ce3fd60140a68c7d382bd3ed67cd9b0 { 'aliquot_tag': 'ALQ_6a247cdf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01237.RNA-Seq.R1_L001.T C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 190405_UNC32-K00270_0161_BH55FNBBXY_ACAGTG_S1_L001_R1_001.fastq.gz 3478633298 FASTQ R1_L001 unaligned CPTAC3 752226f3-1c80-431f-b226-0255a510059c 73986fcf62470ac6f72f0a2b8d037398 { 'aliquot_tag': 'ALQ_6a247cdf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01237.RNA-Seq.R1_L006.A C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTTCC_S23_L006_R1_001.fastq.gz 3867848237 FASTQ R1_L006 unaligned CPTAC3 ba80215c-4900-4015-9279-3f316050e22e 0ca0d04a04a479b71dea4f8d835d3401 { 'aliquot_tag': 'ALQ_5744556f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01237.RNA-Seq.R1_.T C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 20210714_P1_F9_WB7988_plate1_S69_R1_001.fastq.gz 6419510492 FASTQ R1_ unaligned CPTAC3 5ea19e8e-ebfc-490f-beac-c742feca0bfc 439bfc1b0885f432e985a29bda7034b3 { 'aliquot_tag': 'ALQ_f2a4300c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01237.RNA-Seq.R2_L001.T C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 190405_UNC32-K00270_0161_BH55FNBBXY_ACAGTG_S1_L001_R2_001.fastq.gz 3961895738 FASTQ R2_L001 unaligned CPTAC3 a071a665-427a-42db-9a57-085a46c8ff32 2ac2c2cd39b6d8c2a77e2d998899fc30 { 'aliquot_tag': 'ALQ_6a247cdf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01237.RNA-Seq.R2_L006.A C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTTCC_S23_L006_R2_001.fastq.gz 4208634306 FASTQ R2_L006 unaligned CPTAC3 ed2d3b8d-4c33-4ae2-8372-37435993da2c ee1c651d045e92af7384f69897af498e { 'aliquot_tag': 'ALQ_5744556f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01237.RNA-Seq.R2_.T C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 20210714_P1_F9_WB7988_plate1_S69_R2_001.fastq.gz 6672477808 FASTQ R2_ unaligned CPTAC3 246ab387-5a7d-4d72-83f5-537cf75f7b7a 517a0c5ce253b7544be9fd489c9f5b1f { 'aliquot_tag': 'ALQ_f2a4300c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01237.RNA-Seq.chimeric.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 961e8468-a0fb-45c2-8362-8c2218eced1c.rna_seq.chimeric.gdc_realn.bam 197864069 BAM chimeric harmonized CPTAC3 194e33b5-2d21-48e0-9611-f9c412df4047 f196e63030557521a4fe6c5ee1bb18ac { 'aliquot_tag': 'ALQ_f2a4300c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01237.RNA-Seq.genomic.A.hg38 C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 bc8dc68b-f754-45d6-b9a2-6e679a11a030.rna_seq.genomic.gdc_realn.bam 7925658616 BAM genomic harmonized CPTAC3 593e9aa8-e42a-4cca-a447-fddeb351d809 cec675ee5d95f1bccfaa60558efba72e { 'aliquot_tag': 'ALQ_5744556f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01237.RNA-Seq.genomic.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 c3c7f008-08ce-4b39-98d2-1c0734b76dc2.rna_seq.genomic.gdc_realn.bam 7458178489 BAM genomic harmonized CPTAC3 e7d4b40f-3c5a-4c61-a5e2-05e56ff8387a 6ce3fd60140a68c7d382bd3ed67cd9b0 { 'aliquot_tag': 'ALQ_6a247cdf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01237.RNA-Seq.genomic.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 961e8468-a0fb-45c2-8362-8c2218eced1c.rna_seq.genomic.gdc_realn.bam 10169150739 BAM genomic harmonized CPTAC3 9cbede46-1a61-4938-ba77-27a07dd51f80 c352ef3421557838cad300e8985fa12b { 'aliquot_tag': 'ALQ_f2a4300c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01237.RNA-Seq.R1_L001.T C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 190405_UNC32-K00270_0161_BH55FNBBXY_ACAGTG_S1_L001_R1_001.fastq.gz 3478633298 FASTQ R1_L001 unaligned CPTAC3 752226f3-1c80-431f-b226-0255a510059c 73986fcf62470ac6f72f0a2b8d037398 { 'aliquot_tag': 'ALQ_6a247cdf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01237.RNA-Seq.R1_L006.A C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTTCC_S23_L006_R1_001.fastq.gz 3867848237 FASTQ R1_L006 unaligned CPTAC3 ba80215c-4900-4015-9279-3f316050e22e 0ca0d04a04a479b71dea4f8d835d3401 { 'aliquot_tag': 'ALQ_5744556f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-01237.RNA-Seq.R2_L001.T C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 190405_UNC32-K00270_0161_BH55FNBBXY_ACAGTG_S1_L001_R2_001.fastq.gz 3961895738 FASTQ R2_L001 unaligned CPTAC3 a071a665-427a-42db-9a57-085a46c8ff32 2ac2c2cd39b6d8c2a77e2d998899fc30 { 'aliquot_tag': 'ALQ_6a247cdf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01237.RNA-Seq.R2_L006.A C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTTCC_S23_L006_R2_001.fastq.gz 4208634306 FASTQ R2_L006 unaligned CPTAC3 ed2d3b8d-4c33-4ae2-8372-37435993da2c ee1c651d045e92af7384f69897af498e { 'aliquot_tag': 'ALQ_5744556f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-01237.RNA-Seq.T C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 20210714_P1_F9_WB7988_plate1_S69_R1_001.fastq.gz 6419510492 FASTQ unaligned CPTAC3 5ea19e8e-ebfc-490f-beac-c742feca0bfc 439bfc1b0885f432e985a29bda7034b3 +C3L-01237.RNA-Seq.T C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 20210714_P1_F9_WB7988_plate1_S69_R2_001.fastq.gz 6672477808 FASTQ unaligned CPTAC3 246ab387-5a7d-4d72-83f5-537cf75f7b7a 517a0c5ce253b7544be9fd489c9f5b1f C3L-01237.RNA-Seq.transcriptome.A.hg38 C3L-01237 HNSCC RNA-Seq tissue_normal CPT0199830009 bc8dc68b-f754-45d6-b9a2-6e679a11a030.rna_seq.transcriptome.gdc_realn.bam 11581709075 BAM transcriptome harmonized CPTAC3 239a5ecd-0799-4b3d-9a84-5c2fa95f37e9 082af2ffd7fd53ac46320f10e147eaa3 { 'aliquot_tag': 'ALQ_5744556f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01237.RNA-Seq.transcriptome.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199820009 c3c7f008-08ce-4b39-98d2-1c0734b76dc2.rna_seq.transcriptome.gdc_realn.bam 9541506776 BAM transcriptome harmonized CPTAC3 bf5d4594-5826-43d0-8b7d-f8bfaa8f224f 39f3d83aa92bb1c65782ac5e6c6d6628 { 'aliquot_tag': 'ALQ_6a247cdf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01237.RNA-Seq.transcriptome.T.hg38 C3L-01237 HNSCC RNA-Seq tumor CPT0199840011 961e8468-a0fb-45c2-8362-8c2218eced1c.rna_seq.transcriptome.gdc_realn.bam 6774165353 BAM transcriptome harmonized CPTAC3 cc499595-87f2-41ae-ac0f-6ab1e6f8a2f0 90a76829a3615aba21250843341abc5c { 'aliquot_tag': 'ALQ_f2a4300c', 'gdc_sample_type': 'Primary Tumor' } C3L-01237.WGS.N C3L-01237 HNSCC WGS blood_normal CPT0200410002 CPT0200410002.WholeGenome.RP-1303.bam 60530526355 BAM aligned CPTAC3 286fbb40-44ae-4b3f-8c20-baa1d9f3163d c754682142c9d7fb9dc3c30814bd45bb { 'aliquot_tag': 'ALQ_7ece7dc1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01237.WGS.N.hg38 C3L-01237 HNSCC WGS blood_normal CPT0200410002 ca8c763c-557a-4aa1-a964-de58741b0d53_wgs_gdc_realn.bam 91797654199 BAM harmonized CPTAC3 41d7d80d-8a51-4bd3-a74d-774a81f7d260 d78e4289662a66c0381a80b8256d2f15 { 'aliquot_tag': 'ALQ_7ece7dc1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01237.WGS.T C3L-01237 HNSCC WGS tumor CPT0199820006 CPT0199820006.WholeGenome.RP-1303.bam 72153751219 BAM aligned CPTAC3 d84bf169-4d32-430a-b32f-eae75dd09cf4 1bc27cccbbe013671cdc43ef95baf234 { 'aliquot_tag': 'ALQ_fa9b614e', 'gdc_sample_type': 'Primary Tumor' } @@ -6113,12 +6681,15 @@ C3L-01246.MethArray.Green.T C3L-01246 UCEC Methylation Array tumor CPT0080980009 C3L-01246.MethArray.Red.T C3L-01246 UCEC Methylation Array tumor CPT0080980009 202176300111_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 8c35ae7b-2ce1-4db5-b51c-1a280a017120 2ab8a2338f06f4ecea3ce37a6ea64c9d { 'aliquot_tag': 'ALQ_a581e6d5', 'gdc_sample_type': 'Primary Tumor' } C3L-01246.miRNA-Seq.T C3L-01246 UCEC miRNA-Seq tumor CPT0080980006 181113_UNC31-K00269_0164_AH23NNBBXY_TAGCTT_S34_L004_R1_001.unaln.bam 319432738 BAM unaligned CPTAC3 f2788ac3-b71d-4165-beb8-2a9c6c38d27b 5bb15590615ad0c13010709110bfd648 { 'aliquot_tag': 'ALQ_353efb44', 'gdc_sample_type': 'Primary Tumor' } C3L-01246.miRNA-Seq.T.hg38 C3L-01246 UCEC miRNA-Seq tumor CPT0080980006 ae6e918a-4d40-4f1b-b20e-01979b47a301_mirnaseq_gdc_realn.bam 355271067 BAM harmonized CPTAC3 bcc59900-98ac-48d6-b8d8-3a7a1f93406e a691160698e59645476c37a0e03231e4 { 'aliquot_tag': 'ALQ_353efb44', 'gdc_sample_type': 'Primary Tumor' } +C3L-01246.RNA-Seq.chimeric.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080960005 8ad72938-7434-47ec-9d1a-1a8d910d7ce3.rna_seq.chimeric.gdc_realn.bam 253405436 BAM chimeric harmonized CPTAC3 01341863-e08b-48af-9a19-08724dbabcac 4614d408a0bab49dcf713a653a1a4723 { 'aliquot_tag': 'ALQ_1307149f', 'gdc_sample_type': 'Primary Tumor' } C3L-01246.RNA-Seq.chimeric.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080980006 44e2d762-1413-48b7-a996-496ed71e4f96.rna_seq.chimeric.gdc_realn.bam 59133488 BAM chimeric harmonized CPTAC3 0fe31849-e387-4e8a-adfc-0a8b042d3af4 f2a52af636ddb0f5b00a8a966e978aa3 { 'aliquot_tag': 'ALQ_353efb44', 'gdc_sample_type': 'Primary Tumor' } -C3L-01246.RNA-Seq.genomic.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080980006 44e2d762-1413-48b7-a996-496ed71e4f96.rna_seq.genomic.gdc_realn.bam 9778289174 BAM genomic harmonized CPTAC3 0b78faa0-b957-4ead-be8b-876af9342131 a7fb33e8c7d0182f2338517b90420cce { 'aliquot_tag': 'ALQ_353efb44', 'gdc_sample_type': 'Primary Tumor' } -C3L-01246.RNA-Seq.R1_L005.T C3L-01246 UCEC RNA-Seq tumor CPT0080980006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 4167982014 FASTQ R1_L005 unaligned CPTAC3 150efab8-0b73-4f1e-be49-e317b0d739ee a90d25cadf0d348bf0564667cda252d5 { 'aliquot_tag': 'ALQ_353efb44', 'gdc_sample_type': 'Primary Tumor' } -C3L-01246.RNA-Seq.R1_.T C3L-01246 UCEC RNA-Seq tumor CPT0080960005 20210729_P3_A10_WB7988-Plate3_S10_R1_001.fastq.gz 6159434659 FASTQ R1_ unaligned CPTAC3 8e4de314-c539-430b-8db6-0b930a1da13a 5bc646ffdaa34ad7d30a0995a9ff9c0a { 'aliquot_tag': 'ALQ_1307149f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01246.RNA-Seq.R2_L005.T C3L-01246 UCEC RNA-Seq tumor CPT0080980006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 4523805912 FASTQ R2_L005 unaligned CPTAC3 f5b7c2a1-9ed4-451e-880b-9ad37fda8ddb 57c86be853c9aae1c8023a7c4916b63b { 'aliquot_tag': 'ALQ_353efb44', 'gdc_sample_type': 'Primary Tumor' } -C3L-01246.RNA-Seq.R2_.T C3L-01246 UCEC RNA-Seq tumor CPT0080960005 20210729_P3_A10_WB7988-Plate3_S10_R2_001.fastq.gz 6427382071 FASTQ R2_ unaligned CPTAC3 9a421c93-4a5c-4612-835d-0eeffcbb0097 223f71f9ee30cd33215a0e8939db2e40 { 'aliquot_tag': 'ALQ_1307149f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01246.RNA-Seq.genomic.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080960005 8ad72938-7434-47ec-9d1a-1a8d910d7ce3.rna_seq.genomic.gdc_realn.bam 10593869149 BAM genomic harmonized CPTAC3 315374fa-c01d-4eb1-9cc9-dca18969c40a 4ecbc3dbb98388928f66596db636b342 { 'aliquot_tag': 'ALQ_1307149f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01246.RNA-Seq.genomic.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080980006 44e2d762-1413-48b7-a996-496ed71e4f96.rna_seq.genomic.gdc_realn.bam 9778289174 BAM genomic harmonized CPTAC3 98adea27-0226-4877-b5dc-36bb65ee6101 a7fb33e8c7d0182f2338517b90420cce { 'aliquot_tag': 'ALQ_353efb44', 'gdc_sample_type': 'Primary Tumor' } +C3L-01246.RNA-Seq.R1_L005.T C3L-01246 UCEC RNA-Seq tumor CPT0080980006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 4167982014 FASTQ R1_L005 unaligned CPTAC3 150efab8-0b73-4f1e-be49-e317b0d739ee a90d25cadf0d348bf0564667cda252d5 { 'aliquot_tag': 'ALQ_353efb44', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01246.RNA-Seq.R2_L005.T C3L-01246 UCEC RNA-Seq tumor CPT0080980006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 4523805912 FASTQ R2_L005 unaligned CPTAC3 f5b7c2a1-9ed4-451e-880b-9ad37fda8ddb 57c86be853c9aae1c8023a7c4916b63b { 'aliquot_tag': 'ALQ_353efb44', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01246.RNA-Seq.T C3L-01246 UCEC RNA-Seq tumor CPT0080960005 20210729_P3_A10_WB7988-Plate3_S10_R1_001.fastq.gz 6159434659 FASTQ unaligned CPTAC3 8e4de314-c539-430b-8db6-0b930a1da13a 5bc646ffdaa34ad7d30a0995a9ff9c0a +C3L-01246.RNA-Seq.T C3L-01246 UCEC RNA-Seq tumor CPT0080960005 20210729_P3_A10_WB7988-Plate3_S10_R2_001.fastq.gz 6427382071 FASTQ unaligned CPTAC3 9a421c93-4a5c-4612-835d-0eeffcbb0097 223f71f9ee30cd33215a0e8939db2e40 +C3L-01246.RNA-Seq.transcriptome.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080960005 8ad72938-7434-47ec-9d1a-1a8d910d7ce3.rna_seq.transcriptome.gdc_realn.bam 7451176205 BAM transcriptome harmonized CPTAC3 27cb0e05-5942-46f4-a4ea-484c8616f032 fe18b5ca4dce68781a83e95ccf70c508 { 'aliquot_tag': 'ALQ_1307149f', 'gdc_sample_type': 'Primary Tumor' } C3L-01246.RNA-Seq.transcriptome.T.hg38 C3L-01246 UCEC RNA-Seq tumor CPT0080980006 44e2d762-1413-48b7-a996-496ed71e4f96.rna_seq.transcriptome.gdc_realn.bam 10935857645 BAM transcriptome harmonized CPTAC3 24d2ddaa-4d05-4658-b4da-d6d6c04e6352 a1e89d851b8e94eb22919a99ab6a1faf { 'aliquot_tag': 'ALQ_353efb44', 'gdc_sample_type': 'Primary Tumor' } C3L-01246.WGS.N C3L-01246 UCEC WGS blood_normal CPT0081030002 CPT0081030002.WholeGenome.RP-1303.bam 64234276853 BAM aligned CPTAC3 cdcde9e9-8922-4b0e-b36b-9d445b4b67cd a7d34f0dfc3a824e9a8c7941be50b080 { 'aliquot_tag': 'ALQ_c4fb5430', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01246.WGS.N.hg38 C3L-01246 UCEC WGS blood_normal CPT0081030002 69f5bb55-732f-438f-bd16-8a465e97d464_gdc_realn.bam 96605874864 BAM harmonized CPTAC3 2dac5fa1-c56c-4425-ba61-8270014816ca 4115a8d017852db6a1438074e2956768 { 'aliquot_tag': 'ALQ_c4fb5430', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6133,9 +6704,9 @@ C3L-01247.MethArray.Red.T C3L-01247 UCEC Methylation Array tumor CPT0080700009 2 C3L-01247.miRNA-Seq.T C3L-01247 UCEC miRNA-Seq tumor CPT0080700006 181012_UNC32-K00270_0124_AH223CBBXY_CGGAAT_S10_L001_R1_001.unaln.bam 330031240 BAM unaligned CPTAC3 3112196e-5604-4c28-b3f1-861cd110a85c c0d7079a977c1297bb6bcf69f2adbd11 { 'aliquot_tag': 'ALQ_3f44d1f5', 'gdc_sample_type': 'Primary Tumor' } C3L-01247.miRNA-Seq.T.hg38 C3L-01247 UCEC miRNA-Seq tumor CPT0080700006 a025ecc5-b0de-4d11-b983-72db1443df67_mirnaseq_gdc_realn.bam 376859508 BAM harmonized CPTAC3 b7ff4e1c-7ef1-4b8e-b2b2-ad311d5ecd46 9631344185d37ac5bf3458a7ebf9a34f { 'aliquot_tag': 'ALQ_3f44d1f5', 'gdc_sample_type': 'Primary Tumor' } C3L-01247.RNA-Seq.chimeric.T.hg38 C3L-01247 UCEC RNA-Seq tumor CPT0080700006 20cb9e65-fa74-43f3-920d-24c1d835328a.rna_seq.chimeric.gdc_realn.bam 73723520 BAM chimeric harmonized CPTAC3 daa49622-d7cb-4fcf-a3ee-b325ce3008a6 faea94bfbe9c2a08f465a7e1edffd4b3 { 'aliquot_tag': 'ALQ_3f44d1f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-01247.RNA-Seq.genomic.T.hg38 C3L-01247 UCEC RNA-Seq tumor CPT0080700006 20cb9e65-fa74-43f3-920d-24c1d835328a.rna_seq.genomic.gdc_realn.bam 10011589989 BAM genomic harmonized CPTAC3 3a7ffe26-0596-42e3-a895-97ccdefd6b57 c82664543be70869ceec11999a367d25 { 'aliquot_tag': 'ALQ_3f44d1f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-01247.RNA-Seq.R1_L005.T C3L-01247 UCEC RNA-Seq tumor CPT0080700006 170906_UNC32-K00270_0058_BHLJ7FBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4439511718 FASTQ R1_L005 unaligned CPTAC3 20f8e780-92e0-43e6-b7a4-6e84f39235c8 00dff419075951f9894a19708c4a94bd { 'aliquot_tag': 'ALQ_3f44d1f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-01247.RNA-Seq.R2_L005.T C3L-01247 UCEC RNA-Seq tumor CPT0080700006 170906_UNC32-K00270_0058_BHLJ7FBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4823429751 FASTQ R2_L005 unaligned CPTAC3 340e18d4-ab3f-4a19-8efa-19a46955ea2f 56e8d20e4f9af8cc49dc39f53d26c6b2 { 'aliquot_tag': 'ALQ_3f44d1f5', 'gdc_sample_type': 'Primary Tumor' } +C3L-01247.RNA-Seq.genomic.T.hg38 C3L-01247 UCEC RNA-Seq tumor CPT0080700006 20cb9e65-fa74-43f3-920d-24c1d835328a.rna_seq.genomic.gdc_realn.bam 10011589989 BAM genomic harmonized CPTAC3 42f3d3e5-ffec-4314-a9b6-4d09df5d17e5 c82664543be70869ceec11999a367d25 { 'aliquot_tag': 'ALQ_3f44d1f5', 'gdc_sample_type': 'Primary Tumor' } +C3L-01247.RNA-Seq.R1_L005.T C3L-01247 UCEC RNA-Seq tumor CPT0080700006 170906_UNC32-K00270_0058_BHLJ7FBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4439511718 FASTQ R1_L005 unaligned CPTAC3 20f8e780-92e0-43e6-b7a4-6e84f39235c8 00dff419075951f9894a19708c4a94bd { 'aliquot_tag': 'ALQ_3f44d1f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01247.RNA-Seq.R2_L005.T C3L-01247 UCEC RNA-Seq tumor CPT0080700006 170906_UNC32-K00270_0058_BHLJ7FBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4823429751 FASTQ R2_L005 unaligned CPTAC3 340e18d4-ab3f-4a19-8efa-19a46955ea2f 56e8d20e4f9af8cc49dc39f53d26c6b2 { 'aliquot_tag': 'ALQ_3f44d1f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-01247.RNA-Seq.transcriptome.T.hg38 C3L-01247 UCEC RNA-Seq tumor CPT0080700006 20cb9e65-fa74-43f3-920d-24c1d835328a.rna_seq.transcriptome.gdc_realn.bam 10926972606 BAM transcriptome harmonized CPTAC3 07729ccc-3096-498b-8b2c-f019df1a56a6 218bae9b316a8b3f0ab19761a3bd8635 { 'aliquot_tag': 'ALQ_3f44d1f5', 'gdc_sample_type': 'Primary Tumor' } C3L-01247.WGS.N C3L-01247 UCEC WGS blood_normal CPT0080800002 CPT0080800002.WholeGenome.RP-1303.bam 67754672037 BAM aligned CPTAC3 bad4aa98-ea70-474a-988b-da532dc8b98b 6a0443389c9b8c5e858e86376cc733bf { 'aliquot_tag': 'ALQ_c97fa739', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01247.WGS.N.hg38 C3L-01247 UCEC WGS blood_normal CPT0080800002 75350a75-f96e-4de2-a8df-44298992a35d_gdc_realn.bam 103329625643 BAM harmonized CPTAC3 9a71ebf5-d978-4980-8894-e3b597321b3f 88bb68283cc9bab95a50cceacdc8eeac { 'aliquot_tag': 'ALQ_c97fa739', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6149,12 +6720,15 @@ C3L-01248.MethArray.Green.T C3L-01248 UCEC Methylation Array tumor CPT0080300006 C3L-01248.MethArray.Red.T C3L-01248 UCEC Methylation Array tumor CPT0080300006 202176300039_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 93e53802-e409-4f85-aa0f-f91acddefe3b 465b6ca75d1a8e2642d371e338df219f { 'aliquot_tag': 'ALQ_a4d593e3', 'gdc_sample_type': 'Primary Tumor' } C3L-01248.miRNA-Seq.T C3L-01248 UCEC miRNA-Seq tumor CPT0080300009 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L006_R1_001.unaln.bam 257802616 BAM unaligned CPTAC3 64e6b0d9-4419-4c88-8aa9-0c3cc1a7951b d07b8326331751194c40df1bc0f15c64 { 'aliquot_tag': 'ALQ_346a8e72', 'gdc_sample_type': 'Primary Tumor' } C3L-01248.miRNA-Seq.T.hg38 C3L-01248 UCEC miRNA-Seq tumor CPT0080300009 5019e699-3871-4164-91c8-19d0db444516_mirnaseq_gdc_realn.bam 292439770 BAM harmonized CPTAC3 148b1b55-582d-4dd2-8e74-32bde1376918 d5847959be90e291396f14cc8db58e0c { 'aliquot_tag': 'ALQ_346a8e72', 'gdc_sample_type': 'Primary Tumor' } +C3L-01248.RNA-Seq.chimeric.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080280001 8e5c0cd1-d7e9-4217-8a43-45a9a7545a36.rna_seq.chimeric.gdc_realn.bam 134273161 BAM chimeric harmonized CPTAC3 fb368ce1-bf7e-4c42-abd7-50402cd229d0 b247fc000c82ffa6a4ff299e78760e3b { 'aliquot_tag': 'ALQ_c19d9e24', 'gdc_sample_type': 'Primary Tumor' } C3L-01248.RNA-Seq.chimeric.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080300009 994208c0-90d0-4b33-a83c-21eff5fe712f.rna_seq.chimeric.gdc_realn.bam 37652055 BAM chimeric harmonized CPTAC3 e1ca580e-59e6-4a2f-82b5-96bf1f3249fe d6fa913b532a5d0630e15908f46d184a { 'aliquot_tag': 'ALQ_346a8e72', 'gdc_sample_type': 'Primary Tumor' } -C3L-01248.RNA-Seq.genomic.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080300009 994208c0-90d0-4b33-a83c-21eff5fe712f.rna_seq.genomic.gdc_realn.bam 9607548448 BAM genomic harmonized CPTAC3 7d62994a-5887-4ac2-b50e-aaaac0ff860d a3627405cb8e38ed509a866cbbab385f { 'aliquot_tag': 'ALQ_346a8e72', 'gdc_sample_type': 'Primary Tumor' } -C3L-01248.RNA-Seq.R1_L006.T C3L-01248 UCEC RNA-Seq tumor CPT0080300009 170908_UNC31-K00269_0080_BHLJ52BBXX_CCGTCC_S24_L006_R1_001.fastq.gz 4011901122 FASTQ R1_L006 unaligned CPTAC3 f19a6801-b116-4e0d-b755-5f72f604f648 50c29a95b28c6f7462b867aa0c65af7f { 'aliquot_tag': 'ALQ_346a8e72', 'gdc_sample_type': 'Primary Tumor' } -C3L-01248.RNA-Seq.R1_.T C3L-01248 UCEC RNA-Seq tumor CPT0080280001 20210723_P2_E3_WB7988-plate2_S51_R1_001.fastq.gz 5200763996 FASTQ R1_ unaligned CPTAC3 93ce543e-b959-4850-8a56-834233adbb89 5f3374f08623680080bc752408eabd1d { 'aliquot_tag': 'ALQ_c19d9e24', 'gdc_sample_type': 'Primary Tumor' } -C3L-01248.RNA-Seq.R2_L006.T C3L-01248 UCEC RNA-Seq tumor CPT0080300009 170908_UNC31-K00269_0080_BHLJ52BBXX_CCGTCC_S24_L006_R2_001.fastq.gz 4207615645 FASTQ R2_L006 unaligned CPTAC3 848dfac4-6067-4a87-8e2c-887b5e4a3272 68df1714ba940d7ddff0150fddaa71a1 { 'aliquot_tag': 'ALQ_346a8e72', 'gdc_sample_type': 'Primary Tumor' } -C3L-01248.RNA-Seq.R2_.T C3L-01248 UCEC RNA-Seq tumor CPT0080280001 20210723_P2_E3_WB7988-plate2_S51_R2_001.fastq.gz 5328946655 FASTQ R2_ unaligned CPTAC3 189e1a4a-71bc-4175-9118-531dc6ceef62 294e27a543d2d4985c9aa2dcc798fe47 { 'aliquot_tag': 'ALQ_c19d9e24', 'gdc_sample_type': 'Primary Tumor' } +C3L-01248.RNA-Seq.genomic.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080280001 8e5c0cd1-d7e9-4217-8a43-45a9a7545a36.rna_seq.genomic.gdc_realn.bam 7340244385 BAM genomic harmonized CPTAC3 b4ea4663-634d-45bf-a0e2-50b25355c922 e9724059e48a8914925a6f74e0d0a650 { 'aliquot_tag': 'ALQ_c19d9e24', 'gdc_sample_type': 'Primary Tumor' } +C3L-01248.RNA-Seq.genomic.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080300009 994208c0-90d0-4b33-a83c-21eff5fe712f.rna_seq.genomic.gdc_realn.bam 9607548448 BAM genomic harmonized CPTAC3 28e3d8d7-cabd-49be-9109-a1a894916fb0 a3627405cb8e38ed509a866cbbab385f { 'aliquot_tag': 'ALQ_346a8e72', 'gdc_sample_type': 'Primary Tumor' } +C3L-01248.RNA-Seq.R1_L006.T C3L-01248 UCEC RNA-Seq tumor CPT0080300009 170908_UNC31-K00269_0080_BHLJ52BBXX_CCGTCC_S24_L006_R1_001.fastq.gz 4011901122 FASTQ R1_L006 unaligned CPTAC3 f19a6801-b116-4e0d-b755-5f72f604f648 50c29a95b28c6f7462b867aa0c65af7f { 'aliquot_tag': 'ALQ_346a8e72', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01248.RNA-Seq.R2_L006.T C3L-01248 UCEC RNA-Seq tumor CPT0080300009 170908_UNC31-K00269_0080_BHLJ52BBXX_CCGTCC_S24_L006_R2_001.fastq.gz 4207615645 FASTQ R2_L006 unaligned CPTAC3 848dfac4-6067-4a87-8e2c-887b5e4a3272 68df1714ba940d7ddff0150fddaa71a1 { 'aliquot_tag': 'ALQ_346a8e72', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01248.RNA-Seq.T C3L-01248 UCEC RNA-Seq tumor CPT0080280001 20210723_P2_E3_WB7988-plate2_S51_R1_001.fastq.gz 5200763996 FASTQ unaligned CPTAC3 93ce543e-b959-4850-8a56-834233adbb89 5f3374f08623680080bc752408eabd1d +C3L-01248.RNA-Seq.T C3L-01248 UCEC RNA-Seq tumor CPT0080280001 20210723_P2_E3_WB7988-plate2_S51_R2_001.fastq.gz 5328946655 FASTQ unaligned CPTAC3 189e1a4a-71bc-4175-9118-531dc6ceef62 294e27a543d2d4985c9aa2dcc798fe47 +C3L-01248.RNA-Seq.transcriptome.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080280001 8e5c0cd1-d7e9-4217-8a43-45a9a7545a36.rna_seq.transcriptome.gdc_realn.bam 5147730555 BAM transcriptome harmonized CPTAC3 2333a8df-892e-4c67-b833-f6e2da61e5dc a1d166374431af06fbaf4a5e4dda530b { 'aliquot_tag': 'ALQ_c19d9e24', 'gdc_sample_type': 'Primary Tumor' } C3L-01248.RNA-Seq.transcriptome.T.hg38 C3L-01248 UCEC RNA-Seq tumor CPT0080300009 994208c0-90d0-4b33-a83c-21eff5fe712f.rna_seq.transcriptome.gdc_realn.bam 11269096203 BAM transcriptome harmonized CPTAC3 1cd59efe-8e81-46f3-9ecd-75d7c987774b ebe55204c98120161f4d0f80e3379d30 { 'aliquot_tag': 'ALQ_346a8e72', 'gdc_sample_type': 'Primary Tumor' } C3L-01248.WGS.N C3L-01248 UCEC WGS blood_normal CPT0080340001 CPT0080340001.WholeGenome.RP-1303.bam 79987862462 BAM aligned CPTAC3 25a020c8-6c7c-482f-89ef-a5782cf926d0 332b3c2d92ff0bbb5318e7144d9feff7 { 'aliquot_tag': 'ALQ_cf31a080', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01248.WGS.N.hg38 C3L-01248 UCEC WGS blood_normal CPT0080340001 4524e78f-96c8-41f1-a6a8-e96abbd54c27_gdc_realn.bam 119266584582 BAM harmonized CPTAC3 9aae580f-d6ae-4920-8e2f-a249be96c57f 46f69fbe05a286462854f1d532731546 { 'aliquot_tag': 'ALQ_cf31a080', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6168,12 +6742,15 @@ C3L-01249.MethArray.Green.T C3L-01249 UCEC Methylation Array tumor CPT0080880009 C3L-01249.MethArray.Red.T C3L-01249 UCEC Methylation Array tumor CPT0080880009 202176290087_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 959a6d62-520c-4488-bef8-04f0bc93280e 5cc68c39fc15cb574beb8742600e960d { 'aliquot_tag': 'ALQ_6edd3570', 'gdc_sample_type': 'Primary Tumor' } C3L-01249.miRNA-Seq.T C3L-01249 UCEC miRNA-Seq tumor CPT0080880006 181119_UNC31-K00269_0165_AH27WCBBXY_CTAGCT_S14_L005_R1_001.unaln.bam 210911662 BAM unaligned CPTAC3 f8c868fc-848d-4614-9c91-20bbb327e8cc b9731b2f811ea1249ed75a136799b135 { 'aliquot_tag': 'ALQ_fe6228e1', 'gdc_sample_type': 'Primary Tumor' } C3L-01249.miRNA-Seq.T.hg38 C3L-01249 UCEC miRNA-Seq tumor CPT0080880006 89ace656-6665-44bf-8fe3-9d0e425565e5_mirnaseq_gdc_realn.bam 226570494 BAM harmonized CPTAC3 d00f1386-e3dd-4d60-97f5-5c0f8248589e 5d004562f19ea0e420fd12cbaf9b18da { 'aliquot_tag': 'ALQ_fe6228e1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01249.RNA-Seq.chimeric.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080860001 2e57efcb-8c7f-4e6a-bc4d-364e6e28e339.rna_seq.chimeric.gdc_realn.bam 178842707 BAM chimeric harmonized CPTAC3 9c1847bd-8033-4597-aaf5-a3b8e63f8f9e 1abe6286546f2fbd78ab42e26c227b69 { 'aliquot_tag': 'ALQ_df360323', 'gdc_sample_type': 'Primary Tumor' } C3L-01249.RNA-Seq.chimeric.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080880006 5c8d7831-b773-4068-bb6c-fa27242e2889.rna_seq.chimeric.gdc_realn.bam 57854177 BAM chimeric harmonized CPTAC3 3e444495-b96f-46b5-b75c-5fc26876f792 201ecccd88d33bea2d3a8016256f6a16 { 'aliquot_tag': 'ALQ_fe6228e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01249.RNA-Seq.genomic.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080880006 5c8d7831-b773-4068-bb6c-fa27242e2889.rna_seq.genomic.gdc_realn.bam 10982393783 BAM genomic harmonized CPTAC3 d66a1435-91b1-4ac8-8732-40f63d2fe06d 7fdb61bf2f73957aa03e63c25baf41f8 { 'aliquot_tag': 'ALQ_fe6228e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01249.RNA-Seq.R1_L005.T C3L-01249 UCEC RNA-Seq tumor CPT0080880006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4071816231 FASTQ R1_L005 unaligned CPTAC3 5bdc0383-216a-479a-b641-502eed2b241a 7edca60bb008ac919de7f6f6ce6be663 { 'aliquot_tag': 'ALQ_fe6228e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01249.RNA-Seq.R1_.T C3L-01249 UCEC RNA-Seq tumor CPT0080860001 20210714_P1_C3_WB7988_plate1_S27_R1_001.fastq.gz 5458667756 FASTQ R1_ unaligned CPTAC3 1d4175fb-198a-4096-bcbc-bc419aa0339a d437fa122b94283e8e210bbc0af50396 { 'aliquot_tag': 'ALQ_df360323', 'gdc_sample_type': 'Primary Tumor' } -C3L-01249.RNA-Seq.R2_L005.T C3L-01249 UCEC RNA-Seq tumor CPT0080880006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4558825534 FASTQ R2_L005 unaligned CPTAC3 1e55bad8-2e97-4693-9859-81d5834c997f a05b68dac5618c6b0d3a230d5dad71a7 { 'aliquot_tag': 'ALQ_fe6228e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01249.RNA-Seq.R2_.T C3L-01249 UCEC RNA-Seq tumor CPT0080860001 20210714_P1_C3_WB7988_plate1_S27_R2_001.fastq.gz 5640350978 FASTQ R2_ unaligned CPTAC3 3adfd2e8-60a7-428d-9bf1-a587d087adf4 39af81948c62b326e6afaa4028703c47 { 'aliquot_tag': 'ALQ_df360323', 'gdc_sample_type': 'Primary Tumor' } +C3L-01249.RNA-Seq.genomic.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080860001 2e57efcb-8c7f-4e6a-bc4d-364e6e28e339.rna_seq.genomic.gdc_realn.bam 8693213991 BAM genomic harmonized CPTAC3 ea260d31-bdec-4e72-8425-61c3f2346c6f 0b1040f7f781161d9d8a58f37110470e { 'aliquot_tag': 'ALQ_df360323', 'gdc_sample_type': 'Primary Tumor' } +C3L-01249.RNA-Seq.genomic.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080880006 5c8d7831-b773-4068-bb6c-fa27242e2889.rna_seq.genomic.gdc_realn.bam 10982393783 BAM genomic harmonized CPTAC3 31927cca-d2a1-4852-a3b8-1997e191ecf3 7fdb61bf2f73957aa03e63c25baf41f8 { 'aliquot_tag': 'ALQ_fe6228e1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01249.RNA-Seq.R1_L005.T C3L-01249 UCEC RNA-Seq tumor CPT0080880006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4071816231 FASTQ R1_L005 unaligned CPTAC3 5bdc0383-216a-479a-b641-502eed2b241a 7edca60bb008ac919de7f6f6ce6be663 { 'aliquot_tag': 'ALQ_fe6228e1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01249.RNA-Seq.R2_L005.T C3L-01249 UCEC RNA-Seq tumor CPT0080880006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4558825534 FASTQ R2_L005 unaligned CPTAC3 1e55bad8-2e97-4693-9859-81d5834c997f a05b68dac5618c6b0d3a230d5dad71a7 { 'aliquot_tag': 'ALQ_fe6228e1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01249.RNA-Seq.T C3L-01249 UCEC RNA-Seq tumor CPT0080860001 20210714_P1_C3_WB7988_plate1_S27_R1_001.fastq.gz 5458667756 FASTQ unaligned CPTAC3 1d4175fb-198a-4096-bcbc-bc419aa0339a d437fa122b94283e8e210bbc0af50396 +C3L-01249.RNA-Seq.T C3L-01249 UCEC RNA-Seq tumor CPT0080860001 20210714_P1_C3_WB7988_plate1_S27_R2_001.fastq.gz 5640350978 FASTQ unaligned CPTAC3 3adfd2e8-60a7-428d-9bf1-a587d087adf4 39af81948c62b326e6afaa4028703c47 +C3L-01249.RNA-Seq.transcriptome.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080860001 2e57efcb-8c7f-4e6a-bc4d-364e6e28e339.rna_seq.transcriptome.gdc_realn.bam 6538790482 BAM transcriptome harmonized CPTAC3 a46ad20f-1760-4cb2-bb2d-3b50dc7b1e98 1708f0aac657f0907d5a7fa8f06eae5e { 'aliquot_tag': 'ALQ_df360323', 'gdc_sample_type': 'Primary Tumor' } C3L-01249.RNA-Seq.transcriptome.T.hg38 C3L-01249 UCEC RNA-Seq tumor CPT0080880006 5c8d7831-b773-4068-bb6c-fa27242e2889.rna_seq.transcriptome.gdc_realn.bam 9997713022 BAM transcriptome harmonized CPTAC3 aed58eb1-f945-4791-b63f-9d1cbab8c7db 48502fefdf49e239cb171c5c021db1dc { 'aliquot_tag': 'ALQ_fe6228e1', 'gdc_sample_type': 'Primary Tumor' } C3L-01249.WGS.N C3L-01249 UCEC WGS blood_normal CPT0080920002 CPT0080920002.WholeGenome.RP-1303.bam 69641060479 BAM aligned CPTAC3 ad5d34b4-11e4-41b5-97c4-f55c899dd358 cb9d272e13f9a213cb313ef3f7fad48e { 'aliquot_tag': 'ALQ_78e327fc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01249.WGS.N.hg38 C3L-01249 UCEC WGS blood_normal CPT0080920002 a9dfb9b8-ccc8-4c7f-8658-9bc8098e270e_gdc_realn.bam 108062107807 BAM harmonized CPTAC3 04c9b457-112e-4e52-ac06-eac47fa8a994 18ba9fd14b64e9124ffa559c5652a3d8 { 'aliquot_tag': 'ALQ_78e327fc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6187,12 +6764,15 @@ C3L-01252.MethArray.Green.T C3L-01252 UCEC Methylation Array tumor CPT0080610009 C3L-01252.MethArray.Red.T C3L-01252 UCEC Methylation Array tumor CPT0080610009 202184900111_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 10514250-40d1-483e-a501-fa4eec5399cf 7359237721159c2e14646e516e8f0a28 { 'aliquot_tag': 'ALQ_59c73671', 'gdc_sample_type': 'Primary Tumor' } C3L-01252.miRNA-Seq.T C3L-01252 UCEC miRNA-Seq tumor CPT0080610006 181012_UNC32-K00270_0124_AH223CBBXY_CCAACA_S9_L001_R1_001.unaln.bam 251820717 BAM unaligned CPTAC3 9a2d5576-502d-4d16-a488-c33670ed521b 0e954d6b646c35edb93b6a46ba389dae { 'aliquot_tag': 'ALQ_c9782be0', 'gdc_sample_type': 'Primary Tumor' } C3L-01252.miRNA-Seq.T.hg38 C3L-01252 UCEC miRNA-Seq tumor CPT0080610006 f9adcd01-545e-4802-8164-4691fd1237c8_mirnaseq_gdc_realn.bam 283330891 BAM harmonized CPTAC3 20593497-5cf9-4cd0-a99d-b6a531d813f8 2eae90d921fbce9699eebac811eae602 { 'aliquot_tag': 'ALQ_c9782be0', 'gdc_sample_type': 'Primary Tumor' } +C3L-01252.RNA-Seq.chimeric.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080590001 d6a3012c-0c7b-4b54-81e0-cb3be6c0892c.rna_seq.chimeric.gdc_realn.bam 157905783 BAM chimeric harmonized CPTAC3 0a57b77a-1051-4da7-a6e3-b8c7211f2c41 411f44c76debb096eba4cbf949a3cae8 { 'aliquot_tag': 'ALQ_e1f8872c', 'gdc_sample_type': 'Primary Tumor' } C3L-01252.RNA-Seq.chimeric.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080610006 8629fce1-dc79-4c75-a431-60c811f1717d.rna_seq.chimeric.gdc_realn.bam 38694690 BAM chimeric harmonized CPTAC3 50d19882-897a-4652-90a9-efa495e7b8be 80063419b46128b84b59735463571018 { 'aliquot_tag': 'ALQ_c9782be0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01252.RNA-Seq.genomic.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080610006 8629fce1-dc79-4c75-a431-60c811f1717d.rna_seq.genomic.gdc_realn.bam 7111648119 BAM genomic harmonized CPTAC3 2ac45674-3698-40bc-878c-9ca8868e2db5 b20a1882b242ff51f9ce71d47064167b { 'aliquot_tag': 'ALQ_c9782be0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01252.RNA-Seq.R1_L005.T C3L-01252 UCEC RNA-Seq tumor CPT0080610006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3161984688 FASTQ R1_L005 unaligned CPTAC3 d36d42d2-afb4-4098-bac2-2c0d503c2f67 dba1d6c262220e1371b36688618bce98 { 'aliquot_tag': 'ALQ_c9782be0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01252.RNA-Seq.R1_.T C3L-01252 UCEC RNA-Seq tumor CPT0080590001 20210723_P2_F11_WB7988-plate2_S71_R1_001.fastq.gz 3972718635 FASTQ R1_ unaligned CPTAC3 e78da239-1ee6-4300-b765-3645b33c77c3 4faa2ad97e139e14bf5c344555f07a32 { 'aliquot_tag': 'ALQ_e1f8872c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01252.RNA-Seq.R2_L005.T C3L-01252 UCEC RNA-Seq tumor CPT0080610006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3432877942 FASTQ R2_L005 unaligned CPTAC3 992384ee-8c0e-4c30-8732-561df93e281a 2e391643618800eccaf568786060e977 { 'aliquot_tag': 'ALQ_c9782be0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01252.RNA-Seq.R2_.T C3L-01252 UCEC RNA-Seq tumor CPT0080590001 20210723_P2_F11_WB7988-plate2_S71_R2_001.fastq.gz 4065574970 FASTQ R2_ unaligned CPTAC3 e0c4ba9d-44ae-4f26-81d3-a8b1c715fa2f 4d8183b3278042304eaf984cdb8cd0b7 { 'aliquot_tag': 'ALQ_e1f8872c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01252.RNA-Seq.genomic.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080590001 d6a3012c-0c7b-4b54-81e0-cb3be6c0892c.rna_seq.genomic.gdc_realn.bam 7032996467 BAM genomic harmonized CPTAC3 312ab9c6-0597-46e7-a156-d6a0c4a5070f 08e371c9e63b9c02a2698195cf45c09e { 'aliquot_tag': 'ALQ_e1f8872c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01252.RNA-Seq.genomic.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080610006 8629fce1-dc79-4c75-a431-60c811f1717d.rna_seq.genomic.gdc_realn.bam 7111648119 BAM genomic harmonized CPTAC3 f90a0c31-ab89-4454-8a94-e7ee3331fbab b20a1882b242ff51f9ce71d47064167b { 'aliquot_tag': 'ALQ_c9782be0', 'gdc_sample_type': 'Primary Tumor' } +C3L-01252.RNA-Seq.R1_L005.T C3L-01252 UCEC RNA-Seq tumor CPT0080610006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3161984688 FASTQ R1_L005 unaligned CPTAC3 d36d42d2-afb4-4098-bac2-2c0d503c2f67 dba1d6c262220e1371b36688618bce98 { 'aliquot_tag': 'ALQ_c9782be0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01252.RNA-Seq.R2_L005.T C3L-01252 UCEC RNA-Seq tumor CPT0080610006 170906_UNC32-K00270_0058_BHLJ7FBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3432877942 FASTQ R2_L005 unaligned CPTAC3 992384ee-8c0e-4c30-8732-561df93e281a 2e391643618800eccaf568786060e977 { 'aliquot_tag': 'ALQ_c9782be0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01252.RNA-Seq.T C3L-01252 UCEC RNA-Seq tumor CPT0080590001 20210723_P2_F11_WB7988-plate2_S71_R1_001.fastq.gz 3972718635 FASTQ unaligned CPTAC3 e78da239-1ee6-4300-b765-3645b33c77c3 4faa2ad97e139e14bf5c344555f07a32 +C3L-01252.RNA-Seq.T C3L-01252 UCEC RNA-Seq tumor CPT0080590001 20210723_P2_F11_WB7988-plate2_S71_R2_001.fastq.gz 4065574970 FASTQ unaligned CPTAC3 e0c4ba9d-44ae-4f26-81d3-a8b1c715fa2f 4d8183b3278042304eaf984cdb8cd0b7 +C3L-01252.RNA-Seq.transcriptome.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080590001 d6a3012c-0c7b-4b54-81e0-cb3be6c0892c.rna_seq.transcriptome.gdc_realn.bam 3091923725 BAM transcriptome harmonized CPTAC3 3e794f69-c637-4c3d-afdb-9c38bb7aff9c 52dd5c25794ee1dd924db3d608c15b75 { 'aliquot_tag': 'ALQ_e1f8872c', 'gdc_sample_type': 'Primary Tumor' } C3L-01252.RNA-Seq.transcriptome.T.hg38 C3L-01252 UCEC RNA-Seq tumor CPT0080610006 8629fce1-dc79-4c75-a431-60c811f1717d.rna_seq.transcriptome.gdc_realn.bam 7475567129 BAM transcriptome harmonized CPTAC3 ab817c77-d856-4e08-9600-b429d549cdc6 0a9d7f047655c0c4b688af20ce72d1ec { 'aliquot_tag': 'ALQ_c9782be0', 'gdc_sample_type': 'Primary Tumor' } C3L-01252.WGS.N C3L-01252 UCEC WGS blood_normal CPT0080660002 CPT0080660002.WholeGenome.RP-1303.bam 63347976899 BAM aligned CPTAC3 c48c0495-bdfc-4133-9094-e61a2ad71eb2 35812c1b2e69cab30d6a7ec03381988a { 'aliquot_tag': 'ALQ_7c3533e9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01252.WGS.N.hg38 C3L-01252 UCEC WGS blood_normal CPT0080660002 a7a105df-d4f7-4bef-87b3-01819d8bcf0b_gdc_realn.bam 94343461651 BAM harmonized CPTAC3 b738031e-17f5-4a3d-b10e-963d5cc0eab8 0d153e4b04e65d59af2be4ed86456169 { 'aliquot_tag': 'ALQ_7c3533e9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6208,8 +6788,8 @@ C3L-01253.miRNA-Seq.T C3L-01253 UCEC miRNA-Seq tumor CPT0080400006 181012_UNC32- C3L-01253.miRNA-Seq.T.hg38 C3L-01253 UCEC miRNA-Seq tumor CPT0080400006 16a16f75-33a5-4160-9435-92686a4dc20d_mirnaseq_gdc_realn.bam 606421909 BAM harmonized CPTAC3 5d696a15-b436-4a0f-8be4-8e0feba3f69e e6281ea1548657cec57423a7f3204f3e { 'aliquot_tag': 'ALQ_b9d0a35b', 'gdc_sample_type': 'Primary Tumor' } C3L-01253.RNA-Seq.chimeric.T.hg38 C3L-01253 UCEC RNA-Seq tumor CPT0080400006 6df3b80e-317c-478a-b69e-9fa8aa48e402.rna_seq.chimeric.gdc_realn.bam 52348636 BAM chimeric harmonized CPTAC3 f85dd2ee-2fd8-4e0f-ae74-6b6e0161d9d4 8dbbe5e3c7afff9996de6113c0bcf515 { 'aliquot_tag': 'ALQ_b9d0a35b', 'gdc_sample_type': 'Primary Tumor' } C3L-01253.RNA-Seq.genomic.T.hg38 C3L-01253 UCEC RNA-Seq tumor CPT0080400006 6df3b80e-317c-478a-b69e-9fa8aa48e402.rna_seq.genomic.gdc_realn.bam 8544852998 BAM genomic harmonized CPTAC3 9a8e751d-8788-4764-bbd9-adc0952709d4 4099ba7972aad850851eabd0536687ea { 'aliquot_tag': 'ALQ_b9d0a35b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01253.RNA-Seq.R1_L006.T C3L-01253 UCEC RNA-Seq tumor CPT0080400006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTTGA_S24_L006_R1_001.fastq.gz 3839033718 FASTQ R1_L006 unaligned CPTAC3 947060cd-6c80-47b7-8330-3b0d802d9d50 bbc181db753aeea14e4faa9662211276 { 'aliquot_tag': 'ALQ_b9d0a35b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01253.RNA-Seq.R2_L006.T C3L-01253 UCEC RNA-Seq tumor CPT0080400006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTTGA_S24_L006_R2_001.fastq.gz 4206420875 FASTQ R2_L006 unaligned CPTAC3 430e7fee-c564-4b6d-9c18-3249e79c57d1 ed47e1d2b44c6f028bb619bb1a4dffc5 { 'aliquot_tag': 'ALQ_b9d0a35b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01253.RNA-Seq.R1_L006.T C3L-01253 UCEC RNA-Seq tumor CPT0080400006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTTGA_S24_L006_R1_001.fastq.gz 3839033718 FASTQ R1_L006 unaligned CPTAC3 947060cd-6c80-47b7-8330-3b0d802d9d50 bbc181db753aeea14e4faa9662211276 { 'aliquot_tag': 'ALQ_b9d0a35b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01253.RNA-Seq.R2_L006.T C3L-01253 UCEC RNA-Seq tumor CPT0080400006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTTGA_S24_L006_R2_001.fastq.gz 4206420875 FASTQ R2_L006 unaligned CPTAC3 430e7fee-c564-4b6d-9c18-3249e79c57d1 ed47e1d2b44c6f028bb619bb1a4dffc5 { 'aliquot_tag': 'ALQ_b9d0a35b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-01253.RNA-Seq.transcriptome.T.hg38 C3L-01253 UCEC RNA-Seq tumor CPT0080400006 6df3b80e-317c-478a-b69e-9fa8aa48e402.rna_seq.transcriptome.gdc_realn.bam 9606319162 BAM transcriptome harmonized CPTAC3 e206cca9-3ff7-4d3d-a21d-a31d8a92c251 8fed546c5f20713295b0641a03701b6b { 'aliquot_tag': 'ALQ_b9d0a35b', 'gdc_sample_type': 'Primary Tumor' } C3L-01253.WGS.N C3L-01253 UCEC WGS blood_normal CPT0080440002 CPT0080440002.WholeGenome.RP-1303.bam 82233081012 BAM aligned CPTAC3 f454962f-9d2b-4adc-8462-874506a367b6 330ff46fad8665b0e9034b54000ccf41 { 'aliquot_tag': 'ALQ_4b3dc182', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01253.WGS.N.hg38 C3L-01253 UCEC WGS blood_normal CPT0080440002 0ccc9616-79cc-4ff5-b33b-2eac15b4078d_gdc_realn.bam 124998072987 BAM harmonized CPTAC3 b5ce9048-1883-4704-9b11-e8ac3738a5e9 daa0f972fdb2d8e83800866ef8fef88b { 'aliquot_tag': 'ALQ_4b3dc182', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6223,12 +6803,15 @@ C3L-01256.MethArray.Green.T C3L-01256 UCEC Methylation Array tumor CPT0073450009 C3L-01256.MethArray.Red.T C3L-01256 UCEC Methylation Array tumor CPT0073450009 202184990013_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 0ae65b57-e706-4671-8699-99e009975589 5112c0ad07a8de2e342ec67d0632b09b { 'aliquot_tag': 'ALQ_947398b', 'gdc_sample_type': 'Primary Tumor' } C3L-01256.miRNA-Seq.T C3L-01256 UCEC miRNA-Seq tumor CPT0073450006 181012_UNC32-K00270_0124_AH223CBBXY_AGTTCC_S35_L007_R1_001.unaln.bam 252718413 BAM unaligned CPTAC3 a060cd8c-a085-4f78-a248-18a246871bce cc09d4e29333e78868113fa688afd7fc { 'aliquot_tag': 'ALQ_99f8241a', 'gdc_sample_type': 'Primary Tumor' } C3L-01256.miRNA-Seq.T.hg38 C3L-01256 UCEC miRNA-Seq tumor CPT0073450006 26fb9ce8-40d6-458a-9571-7c14764c6710_mirnaseq_gdc_realn.bam 284445834 BAM harmonized CPTAC3 c8d26989-1990-46b1-bfb0-e70a00622e0a 5a80dfeaf014d1b3d132dfc2bf98dcd9 { 'aliquot_tag': 'ALQ_99f8241a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01256.RNA-Seq.chimeric.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073410001 15538621-fff6-403a-afa9-1957d03452b7.rna_seq.chimeric.gdc_realn.bam 177920071 BAM chimeric harmonized CPTAC3 1dd2c3fb-15af-471d-8fc5-094e9ff42795 0f675952a207290c3e48fa8b4df74ee9 { 'aliquot_tag': 'ALQ_f21c1779', 'gdc_sample_type': 'Primary Tumor' } C3L-01256.RNA-Seq.chimeric.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073450006 54f36520-7f10-4156-84af-915a8ea9cf0a.rna_seq.chimeric.gdc_realn.bam 192235173 BAM chimeric harmonized CPTAC3 4d12ffd5-b78d-4c65-95bf-d3918e26b82f 0fcae649d067a6274874f0abaa711a2e { 'aliquot_tag': 'ALQ_99f8241a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01256.RNA-Seq.genomic.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073450006 54f36520-7f10-4156-84af-915a8ea9cf0a.rna_seq.genomic.gdc_realn.bam 7390728914 BAM genomic harmonized CPTAC3 26b985bd-8aae-448e-9ea3-7adf8e560a5f 13a78fa40fb0f42e42c885df6a63de39 { 'aliquot_tag': 'ALQ_99f8241a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01256.RNA-Seq.R1_L007.T C3L-01256 UCEC RNA-Seq tumor CPT0073450006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATGTCA_S23_L007_R1_001.fastq.gz 3761318240 FASTQ R1_L007 unaligned CPTAC3 aafd76a4-f0d2-4e99-bc97-34a7f2c06846 b2195e17b5f26f35a28a0f9ed7bc62b5 { 'aliquot_tag': 'ALQ_99f8241a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01256.RNA-Seq.R1_.T C3L-01256 UCEC RNA-Seq tumor CPT0073410001 20210729_P3_D2_WB7988-Plate3_S38_R1_001.fastq.gz 4634004887 FASTQ R1_ unaligned CPTAC3 a2286070-1ca0-4220-995d-4b52f21b7ac1 f07d157075a49ea9ffc6aa4ba68e01fb { 'aliquot_tag': 'ALQ_f21c1779', 'gdc_sample_type': 'Primary Tumor' } -C3L-01256.RNA-Seq.R2_L007.T C3L-01256 UCEC RNA-Seq tumor CPT0073450006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATGTCA_S23_L007_R2_001.fastq.gz 4072906223 FASTQ R2_L007 unaligned CPTAC3 9c0ad385-aa72-4df1-a53b-57f77602a7d7 547473f5a415e5355a94075df9067340 { 'aliquot_tag': 'ALQ_99f8241a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01256.RNA-Seq.R2_.T C3L-01256 UCEC RNA-Seq tumor CPT0073410001 20210729_P3_D2_WB7988-Plate3_S38_R2_001.fastq.gz 4805766274 FASTQ R2_ unaligned CPTAC3 23da0ca3-9d18-4cef-b71a-1bb7fcc09d40 f84d1f6edbf02c8f19e161fba380d0f5 { 'aliquot_tag': 'ALQ_f21c1779', 'gdc_sample_type': 'Primary Tumor' } +C3L-01256.RNA-Seq.genomic.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073410001 15538621-fff6-403a-afa9-1957d03452b7.rna_seq.genomic.gdc_realn.bam 7428031802 BAM genomic harmonized CPTAC3 69eb43cc-231b-4cee-a5ae-a6d887940ea4 8faf2cccc8a49a2f237ce39ee252e6f5 { 'aliquot_tag': 'ALQ_f21c1779', 'gdc_sample_type': 'Primary Tumor' } +C3L-01256.RNA-Seq.genomic.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073450006 54f36520-7f10-4156-84af-915a8ea9cf0a.rna_seq.genomic.gdc_realn.bam 7390728914 BAM genomic harmonized CPTAC3 648d8dc2-262f-4de9-ad8e-fc0e0fe8c28d 13a78fa40fb0f42e42c885df6a63de39 { 'aliquot_tag': 'ALQ_99f8241a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01256.RNA-Seq.R1_L007.T C3L-01256 UCEC RNA-Seq tumor CPT0073450006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATGTCA_S23_L007_R1_001.fastq.gz 3761318240 FASTQ R1_L007 unaligned CPTAC3 aafd76a4-f0d2-4e99-bc97-34a7f2c06846 b2195e17b5f26f35a28a0f9ed7bc62b5 { 'aliquot_tag': 'ALQ_99f8241a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01256.RNA-Seq.R2_L007.T C3L-01256 UCEC RNA-Seq tumor CPT0073450006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATGTCA_S23_L007_R2_001.fastq.gz 4072906223 FASTQ R2_L007 unaligned CPTAC3 9c0ad385-aa72-4df1-a53b-57f77602a7d7 547473f5a415e5355a94075df9067340 { 'aliquot_tag': 'ALQ_99f8241a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-01256.RNA-Seq.T C3L-01256 UCEC RNA-Seq tumor CPT0073410001 20210729_P3_D2_WB7988-Plate3_S38_R1_001.fastq.gz 4634004887 FASTQ unaligned CPTAC3 a2286070-1ca0-4220-995d-4b52f21b7ac1 f07d157075a49ea9ffc6aa4ba68e01fb +C3L-01256.RNA-Seq.T C3L-01256 UCEC RNA-Seq tumor CPT0073410001 20210729_P3_D2_WB7988-Plate3_S38_R2_001.fastq.gz 4805766274 FASTQ unaligned CPTAC3 23da0ca3-9d18-4cef-b71a-1bb7fcc09d40 f84d1f6edbf02c8f19e161fba380d0f5 +C3L-01256.RNA-Seq.transcriptome.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073410001 15538621-fff6-403a-afa9-1957d03452b7.rna_seq.transcriptome.gdc_realn.bam 3641956382 BAM transcriptome harmonized CPTAC3 e2c24711-513e-48fc-947a-4003a0c44409 331dee5df5599c00f349c35539a428aa { 'aliquot_tag': 'ALQ_f21c1779', 'gdc_sample_type': 'Primary Tumor' } C3L-01256.RNA-Seq.transcriptome.T.hg38 C3L-01256 UCEC RNA-Seq tumor CPT0073450006 54f36520-7f10-4156-84af-915a8ea9cf0a.rna_seq.transcriptome.gdc_realn.bam 9325669305 BAM transcriptome harmonized CPTAC3 f15ac041-7682-4434-9920-1247535ee939 f030c2ab9c1d2d8ef1477e3f10f569fe { 'aliquot_tag': 'ALQ_99f8241a', 'gdc_sample_type': 'Primary Tumor' } C3L-01256.WGS.N C3L-01256 UCEC WGS blood_normal CPT0073470002 CPT0073470002.WholeGenome.RP-1303.bam 84063332371 BAM aligned CPTAC3 710decdb-c33e-481e-845c-951c5833bcc7 514cd022db160a9b9599afc777672c1f { 'aliquot_tag': 'ALQ_e455b363', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01256.WGS.N.hg38 C3L-01256 UCEC WGS blood_normal CPT0073470002 2df1178d-478f-43e4-9bb3-69c9cb9bc38e_gdc_realn.bam 126776835461 BAM harmonized CPTAC3 01b7fb65-f024-4aaa-8f7c-ae8d5457633a ab00e86b8ac40e67c8503f749d6fb2b7 { 'aliquot_tag': 'ALQ_e455b363', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6243,12 +6826,15 @@ C3L-01257.MethArray.Red.T C3L-01257 UCEC Methylation Array tumor CPT0073520009 2 C3L-01257.miRNA-Seq.T C3L-01257 UCEC miRNA-Seq tumor CPT0073520013 181119_UNC31-K00269_0165_AH27WCBBXY_CTCAGA_S16_L005_R1_001.unaln.bam 215713343 BAM unaligned CPTAC3 b5d0b452-b17f-4b87-9dee-273f2fcb876b 1f82938289c696a780bdccec9cba7a3c { 'aliquot_tag': 'ALQ_89f5ee61', 'gdc_sample_type': 'Primary Tumor' } C3L-01257.miRNA-Seq.T.hg38 C3L-01257 UCEC miRNA-Seq tumor CPT0073520013 d72e1f5e-5cf3-4cee-8054-0599526852df_mirnaseq_gdc_realn.bam 231985536 BAM harmonized CPTAC3 ed635a3f-a4f4-42b8-acba-cca5db91866d 2cb1d52c9ee369c3d3a87b8d37fc2647 { 'aliquot_tag': 'ALQ_89f5ee61', 'gdc_sample_type': 'Primary Tumor' } C3L-01257.RNA-Seq.chimeric.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073520013 c284b2f4-f385-498e-a338-0ef9fbe80c4d.rna_seq.chimeric.gdc_realn.bam 44719522 BAM chimeric harmonized CPTAC3 0f2933f0-b3d1-4096-a356-fe6d17896036 8891bce0c06eb26ce2b1deaba53066be { 'aliquot_tag': 'ALQ_89f5ee61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01257.RNA-Seq.genomic.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073520013 c284b2f4-f385-498e-a338-0ef9fbe80c4d.rna_seq.genomic.gdc_realn.bam 8823544951 BAM genomic harmonized CPTAC3 7e690a2e-6857-40c8-aedd-72debf5e7419 a5b5791b5335353c0f4b4b56a6c064b9 { 'aliquot_tag': 'ALQ_89f5ee61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01257.RNA-Seq.R1_L004.T C3L-01257 UCEC RNA-Seq tumor CPT0073520013 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4063064419 FASTQ R1_L004 unaligned CPTAC3 7c9d4661-f204-4d60-b0da-9de70a2d29b7 4552109fe2428b3fc155d6a57682aaaf { 'aliquot_tag': 'ALQ_89f5ee61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01257.RNA-Seq.R1_.T C3L-01257 UCEC RNA-Seq tumor CPT0073540001 20210714_P1_G12_WB7988_plate1_S83_R1_001.fastq.gz 5281490822 FASTQ R1_ unaligned CPTAC3 785c0243-009c-49d7-b4c0-be4734323d54 c212748c4bd31b344f26ee789ad8241a { 'aliquot_tag': 'ALQ_f1a04bac', 'gdc_sample_type': 'Primary Tumor' } -C3L-01257.RNA-Seq.R2_L004.T C3L-01257 UCEC RNA-Seq tumor CPT0073520013 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4399535512 FASTQ R2_L004 unaligned CPTAC3 b802ec84-9a75-4c16-bf86-e3b4e2e29561 22e55e021e0dbae07b4935faf9bcf661 { 'aliquot_tag': 'ALQ_89f5ee61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01257.RNA-Seq.R2_.T C3L-01257 UCEC RNA-Seq tumor CPT0073540001 20210714_P1_G12_WB7988_plate1_S83_R2_001.fastq.gz 5478369987 FASTQ R2_ unaligned CPTAC3 22101653-18f1-4704-a537-6963329ab127 0b2957b1de3a8cac70a7d71aab820a33 { 'aliquot_tag': 'ALQ_f1a04bac', 'gdc_sample_type': 'Primary Tumor' } +C3L-01257.RNA-Seq.chimeric.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073540001 059f19d6-647a-4ae0-807a-42520fc946d1.rna_seq.chimeric.gdc_realn.bam 196067454 BAM chimeric harmonized CPTAC3 ebfe9851-1962-4704-8441-5a57bc1f1de8 df7348da07a8e7d7a7dde96fa02a564a { 'aliquot_tag': 'ALQ_f1a04bac', 'gdc_sample_type': 'Primary Tumor' } +C3L-01257.RNA-Seq.genomic.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073520013 c284b2f4-f385-498e-a338-0ef9fbe80c4d.rna_seq.genomic.gdc_realn.bam 8823544951 BAM genomic harmonized CPTAC3 76d94c5d-68d6-4627-a33c-f218eb5b1f68 a5b5791b5335353c0f4b4b56a6c064b9 { 'aliquot_tag': 'ALQ_89f5ee61', 'gdc_sample_type': 'Primary Tumor' } +C3L-01257.RNA-Seq.genomic.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073540001 059f19d6-647a-4ae0-807a-42520fc946d1.rna_seq.genomic.gdc_realn.bam 8826823183 BAM genomic harmonized CPTAC3 95da19fb-a5e1-4f8b-8b44-9b33f98a05c3 ab0a97cd868cca5fe0af7ac1dc6ba615 { 'aliquot_tag': 'ALQ_f1a04bac', 'gdc_sample_type': 'Primary Tumor' } +C3L-01257.RNA-Seq.R1_L004.T C3L-01257 UCEC RNA-Seq tumor CPT0073520013 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4063064419 FASTQ R1_L004 unaligned CPTAC3 7c9d4661-f204-4d60-b0da-9de70a2d29b7 4552109fe2428b3fc155d6a57682aaaf { 'aliquot_tag': 'ALQ_89f5ee61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01257.RNA-Seq.R2_L004.T C3L-01257 UCEC RNA-Seq tumor CPT0073520013 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4399535512 FASTQ R2_L004 unaligned CPTAC3 b802ec84-9a75-4c16-bf86-e3b4e2e29561 22e55e021e0dbae07b4935faf9bcf661 { 'aliquot_tag': 'ALQ_89f5ee61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-01257.RNA-Seq.T C3L-01257 UCEC RNA-Seq tumor CPT0073540001 20210714_P1_G12_WB7988_plate1_S83_R1_001.fastq.gz 5281490822 FASTQ unaligned CPTAC3 785c0243-009c-49d7-b4c0-be4734323d54 c212748c4bd31b344f26ee789ad8241a +C3L-01257.RNA-Seq.T C3L-01257 UCEC RNA-Seq tumor CPT0073540001 20210714_P1_G12_WB7988_plate1_S83_R2_001.fastq.gz 5478369987 FASTQ unaligned CPTAC3 22101653-18f1-4704-a537-6963329ab127 0b2957b1de3a8cac70a7d71aab820a33 C3L-01257.RNA-Seq.transcriptome.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073520013 c284b2f4-f385-498e-a338-0ef9fbe80c4d.rna_seq.transcriptome.gdc_realn.bam 10054871273 BAM transcriptome harmonized CPTAC3 098eba98-9539-4c22-af7e-e224fb708750 d6b24f9e4799070a131bdf0ce95e8c53 { 'aliquot_tag': 'ALQ_89f5ee61', 'gdc_sample_type': 'Primary Tumor' } +C3L-01257.RNA-Seq.transcriptome.T.hg38 C3L-01257 UCEC RNA-Seq tumor CPT0073540001 059f19d6-647a-4ae0-807a-42520fc946d1.rna_seq.transcriptome.gdc_realn.bam 4916961531 BAM transcriptome harmonized CPTAC3 d2779095-87a6-445a-a390-6fa7fa0820c2 024812a6324854f7224962c00cdaed42 { 'aliquot_tag': 'ALQ_f1a04bac', 'gdc_sample_type': 'Primary Tumor' } C3L-01257.WGS.N C3L-01257 UCEC WGS blood_normal CPT0073580002 CPT0073580002.WholeGenome.RP-1303.bam 65827543164 BAM aligned CPTAC3 3214d542-a601-4cb3-a721-456702e26547 e1944eba1e5d38f667e840796a43ac8f { 'aliquot_tag': 'ALQ_ad59f717', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01257.WGS.N.hg38 C3L-01257 UCEC WGS blood_normal CPT0073580002 3db8446e-2099-484b-8423-a49189910b49_gdc_realn.bam 98058524518 BAM harmonized CPTAC3 54d040a9-00d4-4a18-bad6-bdeaa1a758ba 40d4d3ca0557435218d6fb40cd8ceac9 { 'aliquot_tag': 'ALQ_ad59f717', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01257.WGS.T C3L-01257 UCEC WGS tumor CPT0073520009 CPT0073520009.WholeGenome.RP-1303.bam 70868851460 BAM aligned CPTAC3 c2dcc5f6-cf1b-4412-ace3-32e83634dbae 19bc11859a6429cabbfa2c8645d982bc { 'aliquot_tag': 'ALQ_703b363e', 'gdc_sample_type': 'Primary Tumor' } @@ -6261,13 +6847,16 @@ C3L-01274.MethArray.Green.T C3L-01274 UCEC Methylation Array tumor CPT0073630009 C3L-01274.MethArray.Red.T C3L-01274 UCEC Methylation Array tumor CPT0073630009 202176290047_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 5578bb07-2dfc-480c-97c4-eae213ec9da2 13632deb3184892a7239c5f798e70c54 { 'aliquot_tag': 'ALQ_cbcf6d20', 'gdc_sample_type': 'Primary Tumor' } C3L-01274.miRNA-Seq.T C3L-01274 UCEC miRNA-Seq tumor CPT0073630006 181119_UNC31-K00269_0165_AH27WCBBXY_GATCAG_S33_L005_R1_001.unaln.bam 173198260 BAM unaligned CPTAC3 9e983688-405e-4887-bf2d-527ebeb08657 cc62011da1687f1f6b7a10bcbc7d5708 { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor' } C3L-01274.miRNA-Seq.T.hg38 C3L-01274 UCEC miRNA-Seq tumor CPT0073630006 6649e770-5ea3-4a10-85ea-c3e169a97213_mirnaseq_gdc_realn.bam 193417284 BAM harmonized CPTAC3 bb060084-7061-40ee-9995-30354766cd92 3a8aa87addbdabeb17407f8ce45e0f83 { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01274.RNA-Seq.chimeric.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 d9bfcbf1-c763-4120-b2d0-ae5223b7d32a.rna_seq.chimeric.gdc_realn.bam 167711427 BAM chimeric harmonized CPTAC3 2f92f983-c281-40ef-ac9e-797948ffc8bd 356c36aa50d231d14ea32679c06e9420 { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01274.RNA-Seq.genomic.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 d9bfcbf1-c763-4120-b2d0-ae5223b7d32a.rna_seq.genomic.gdc_realn.bam 8721420453 BAM genomic harmonized CPTAC3 9799e37c-560a-496e-99cb-dd01c9868d08 b89539c5fc205b7cbb6a0a4701f51e9b { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01274.RNA-Seq.R1_L006.T C3L-01274 UCEC RNA-Seq tumor CPT0073630006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L006_R1_001.fastq.gz 4334850295 FASTQ R1_L006 unaligned CPTAC3 adabf69c-bc64-42c6-84cc-40e6c940bfc4 7fe44679100399223ba35cb066eeab6d { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01274.RNA-Seq.R1_.T C3L-01274 UCEC RNA-Seq tumor CPT0073640001 20210723_P2_A11_WB7988-plate2_S11_R1_001.fastq.gz 3944111426 FASTQ R1_ unaligned CPTAC3 5bf7b772-62ed-4b85-a451-550bf9543c19 39ec777b7d1f8072938ada17049cfc9f { 'aliquot_tag': 'ALQ_77343902', 'gdc_sample_type': 'Primary Tumor' } -C3L-01274.RNA-Seq.R2_L006.T C3L-01274 UCEC RNA-Seq tumor CPT0073630006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L006_R2_001.fastq.gz 4663453182 FASTQ R2_L006 unaligned CPTAC3 ddfc032c-927c-4358-b288-650e4f767de7 df35bb904dc8b430e0c15680be9cf6a0 { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01274.RNA-Seq.R2_.T C3L-01274 UCEC RNA-Seq tumor CPT0073640001 20210723_P2_A11_WB7988-plate2_S11_R2_001.fastq.gz 4117441845 FASTQ R2_ unaligned CPTAC3 03b7e483-eb54-4ae5-8c12-affc5515cafd c4fb5dfdc66d1814020201becaad00ea { 'aliquot_tag': 'ALQ_77343902', 'gdc_sample_type': 'Primary Tumor' } -C3L-01274.RNA-Seq.transcriptome.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 d9bfcbf1-c763-4120-b2d0-ae5223b7d32a.rna_seq.transcriptome.gdc_realn.bam 10870866964 BAM transcriptome harmonized CPTAC3 a12bb17c-6cd7-4a17-a83a-b1b2544bb999 05018e7780115f2d02e9a6557228aba1 { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01274.RNA-Seq.chimeric.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 1c25d21d-761a-4c5f-8602-967653719264.rna_seq.chimeric.gdc_realn.bam 167678268 BAM chimeric harmonized CPTAC3 a8487de5-e6bf-464a-9b04-713d42eb795d 2adaede6e6928bf3460ce4316506b557 { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01274.RNA-Seq.chimeric.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073640001 8e27ac15-32ff-467b-993d-b4d92c93e768.rna_seq.chimeric.gdc_realn.bam 76168275 BAM chimeric harmonized CPTAC3 e6659dd0-abee-4103-876f-102f24927342 cd8f15b1107b7dbee5c33b79095ccde2 { 'aliquot_tag': 'ALQ_77343902', 'gdc_sample_type': 'Primary Tumor' } +C3L-01274.RNA-Seq.genomic.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 1c25d21d-761a-4c5f-8602-967653719264.rna_seq.genomic.gdc_realn.bam 8721980831 BAM genomic harmonized CPTAC3 6e0bacc8-4b7e-4052-bd39-e92d5f142cf8 f0760f2604e9c12ce1652ef5a03b8422 { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01274.RNA-Seq.genomic.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073640001 8e27ac15-32ff-467b-993d-b4d92c93e768.rna_seq.genomic.gdc_realn.bam 7601166536 BAM genomic harmonized CPTAC3 2b76149b-7cab-4c01-a67a-dab19c3c8019 d7c734f60ab9239a4d820c5fbbb91898 { 'aliquot_tag': 'ALQ_77343902', 'gdc_sample_type': 'Primary Tumor' } +C3L-01274.RNA-Seq.R1_L006.T C3L-01274 UCEC RNA-Seq tumor CPT0073630006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L006_R1_001.fastq.gz 4334850295 FASTQ R1_L006 unaligned CPTAC3 adabf69c-bc64-42c6-84cc-40e6c940bfc4 7fe44679100399223ba35cb066eeab6d { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01274.RNA-Seq.R2_L006.T C3L-01274 UCEC RNA-Seq tumor CPT0073630006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L006_R2_001.fastq.gz 4663453182 FASTQ R2_L006 unaligned CPTAC3 ddfc032c-927c-4358-b288-650e4f767de7 df35bb904dc8b430e0c15680be9cf6a0 { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01274.RNA-Seq.T C3L-01274 UCEC RNA-Seq tumor CPT0073640001 20210723_P2_A11_WB7988-plate2_S11_R1_001.fastq.gz 3944111426 FASTQ unaligned CPTAC3 5bf7b772-62ed-4b85-a451-550bf9543c19 39ec777b7d1f8072938ada17049cfc9f +C3L-01274.RNA-Seq.T C3L-01274 UCEC RNA-Seq tumor CPT0073640001 20210723_P2_A11_WB7988-plate2_S11_R2_001.fastq.gz 4117441845 FASTQ unaligned CPTAC3 03b7e483-eb54-4ae5-8c12-affc5515cafd c4fb5dfdc66d1814020201becaad00ea +C3L-01274.RNA-Seq.transcriptome.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073630006 1c25d21d-761a-4c5f-8602-967653719264.rna_seq.transcriptome.gdc_realn.bam 12460186371 BAM transcriptome harmonized CPTAC3 37ecdcb4-60c8-4570-a92f-083c650f022c ed85e856d0ff3a1a336f9921235f0148 { 'aliquot_tag': 'ALQ_5b7070b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01274.RNA-Seq.transcriptome.T.hg38 C3L-01274 UCEC RNA-Seq tumor CPT0073640001 8e27ac15-32ff-467b-993d-b4d92c93e768.rna_seq.transcriptome.gdc_realn.bam 3970319237 BAM transcriptome harmonized CPTAC3 a2e89930-c87e-4a32-88fd-f2342efe6ac7 8f141ab25f2698ad6fcdb8c9584b0b2f { 'aliquot_tag': 'ALQ_77343902', 'gdc_sample_type': 'Primary Tumor' } C3L-01274.WGS.N C3L-01274 UCEC WGS blood_normal CPT0073650002 CPT0073650002.WholeGenome.RP-1303.bam 60948052243 BAM aligned CPTAC3 b1c0693f-e5ba-4d07-9d6f-f0f2cea3e4ae 14ce0518b46dcd5b8595152e62727c75 { 'aliquot_tag': 'ALQ_d35d4108', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01274.WGS.N.hg38 C3L-01274 UCEC WGS blood_normal CPT0073650002 a173b565-312c-4c20-bd59-afb066c1d7b3_gdc_realn.bam 90075253528 BAM harmonized CPTAC3 17108db7-3252-4f5f-a60a-79a9000ddb69 5aab335a7ee1357cf59ba1c86f843c77 { 'aliquot_tag': 'ALQ_d35d4108', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01274.WGS.T C3L-01274 UCEC WGS tumor CPT0073630009 CPT0073630009.WholeGenome.RP-1303.bam 77523757306 BAM aligned CPTAC3 2c8e5a8f-d394-4c0b-83a5-d71515148bfe e2ef4248cfc7157947b7ee068e239676 { 'aliquot_tag': 'ALQ_cbcf6d20', 'gdc_sample_type': 'Primary Tumor' } @@ -6280,12 +6869,15 @@ C3L-01275.MethArray.Green.T C3L-01275 UCEC Methylation Array tumor CPT0073730009 C3L-01275.MethArray.Red.T C3L-01275 UCEC Methylation Array tumor CPT0073730009 202178770006_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 b8ba33c7-9157-43cc-a81b-56c96fdc8dbe a38ca5dbf73585e34b3ddd5b4a0b457a { 'aliquot_tag': 'ALQ_93be85', 'gdc_sample_type': 'Primary Tumor' } C3L-01275.miRNA-Seq.T C3L-01275 UCEC miRNA-Seq tumor CPT0073730006 181012_UNC32-K00270_0124_AH223CBBXY_TAGCTT_S31_L007_R1_001.unaln.bam 252093420 BAM unaligned CPTAC3 7cd73eb0-8381-4c03-9354-953341045ba2 8694a7ae8b49f2a27f14d940238c67f1 { 'aliquot_tag': 'ALQ_902ca314', 'gdc_sample_type': 'Primary Tumor' } C3L-01275.miRNA-Seq.T.hg38 C3L-01275 UCEC miRNA-Seq tumor CPT0073730006 fc67a81a-e459-4391-b965-b3734bc593a3_mirnaseq_gdc_realn.bam 278918188 BAM harmonized CPTAC3 5f4112c3-dd69-4d1a-ad02-1d0a3a4faced 2da98d84f762ee363e86f5be006cd86d { 'aliquot_tag': 'ALQ_902ca314', 'gdc_sample_type': 'Primary Tumor' } +C3L-01275.RNA-Seq.chimeric.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073690001 b47cfdde-069c-44e0-87bb-48d83c744a78.rna_seq.chimeric.gdc_realn.bam 166745410 BAM chimeric harmonized CPTAC3 10915be1-d552-4c25-8f41-41c4765a6358 832d405c5cfb8ef354d6769bccb88d58 { 'aliquot_tag': 'ALQ_8fa4fdb3', 'gdc_sample_type': 'Primary Tumor' } C3L-01275.RNA-Seq.chimeric.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073730006 813e5846-10fb-4ba9-bcc9-03be00305d6e.rna_seq.chimeric.gdc_realn.bam 91827027 BAM chimeric harmonized CPTAC3 e2687044-cf34-4a95-9f5e-d08d8362b15b 36832a08ce0327390c5bdee5be72981c { 'aliquot_tag': 'ALQ_902ca314', 'gdc_sample_type': 'Primary Tumor' } -C3L-01275.RNA-Seq.genomic.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073730006 813e5846-10fb-4ba9-bcc9-03be00305d6e.rna_seq.genomic.gdc_realn.bam 8326569091 BAM genomic harmonized CPTAC3 655d3772-31c0-4563-913a-4757fffc3e2c 1470d85e8d2d9278e2d112e76320185f { 'aliquot_tag': 'ALQ_902ca314', 'gdc_sample_type': 'Primary Tumor' } -C3L-01275.RNA-Seq.R1_L006.T C3L-01275 UCEC RNA-Seq tumor CPT0073730006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L006_R1_001.fastq.gz 3988434359 FASTQ R1_L006 unaligned CPTAC3 4b44bd70-9e38-452a-878f-4875577eaa2c 3f6c5593444f3ae3799f8456de20316d { 'aliquot_tag': 'ALQ_902ca314', 'gdc_sample_type': 'Primary Tumor' } -C3L-01275.RNA-Seq.R1_.T C3L-01275 UCEC RNA-Seq tumor CPT0073690001 20210729_P3_D4_WB7988-Plate3_S40_R1_001.fastq.gz 5661768051 FASTQ R1_ unaligned CPTAC3 084e10ac-9706-41cc-961e-13473e82b21d 372ed36604bb3ae33e03e226cd6a863b { 'aliquot_tag': 'ALQ_8fa4fdb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01275.RNA-Seq.R2_L006.T C3L-01275 UCEC RNA-Seq tumor CPT0073730006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L006_R2_001.fastq.gz 4442041976 FASTQ R2_L006 unaligned CPTAC3 555f14f3-dae8-486d-8306-df6603731765 2562397a52a1f4ea004b767e8887713a { 'aliquot_tag': 'ALQ_902ca314', 'gdc_sample_type': 'Primary Tumor' } -C3L-01275.RNA-Seq.R2_.T C3L-01275 UCEC RNA-Seq tumor CPT0073690001 20210729_P3_D4_WB7988-Plate3_S40_R2_001.fastq.gz 5905290807 FASTQ R2_ unaligned CPTAC3 34921176-558d-46f8-9cf2-ed74cebffb7b b944db3781bb90a1ab66ae388e4f9e11 { 'aliquot_tag': 'ALQ_8fa4fdb3', 'gdc_sample_type': 'Primary Tumor' } +C3L-01275.RNA-Seq.genomic.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073690001 b47cfdde-069c-44e0-87bb-48d83c744a78.rna_seq.genomic.gdc_realn.bam 8758709819 BAM genomic harmonized CPTAC3 1cd02c63-89ed-4ded-94b6-1245219f3112 f2da1b905033856ad34ef099ac6ea5b6 { 'aliquot_tag': 'ALQ_8fa4fdb3', 'gdc_sample_type': 'Primary Tumor' } +C3L-01275.RNA-Seq.genomic.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073730006 813e5846-10fb-4ba9-bcc9-03be00305d6e.rna_seq.genomic.gdc_realn.bam 8326569091 BAM genomic harmonized CPTAC3 994f4781-3aff-4fac-bcc9-bf03c5d59609 1470d85e8d2d9278e2d112e76320185f { 'aliquot_tag': 'ALQ_902ca314', 'gdc_sample_type': 'Primary Tumor' } +C3L-01275.RNA-Seq.R1_L006.T C3L-01275 UCEC RNA-Seq tumor CPT0073730006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L006_R1_001.fastq.gz 3988434359 FASTQ R1_L006 unaligned CPTAC3 4b44bd70-9e38-452a-878f-4875577eaa2c 3f6c5593444f3ae3799f8456de20316d { 'aliquot_tag': 'ALQ_902ca314', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01275.RNA-Seq.R2_L006.T C3L-01275 UCEC RNA-Seq tumor CPT0073730006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L006_R2_001.fastq.gz 4442041976 FASTQ R2_L006 unaligned CPTAC3 555f14f3-dae8-486d-8306-df6603731765 2562397a52a1f4ea004b767e8887713a { 'aliquot_tag': 'ALQ_902ca314', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01275.RNA-Seq.T C3L-01275 UCEC RNA-Seq tumor CPT0073690001 20210729_P3_D4_WB7988-Plate3_S40_R1_001.fastq.gz 5661768051 FASTQ unaligned CPTAC3 084e10ac-9706-41cc-961e-13473e82b21d 372ed36604bb3ae33e03e226cd6a863b +C3L-01275.RNA-Seq.T C3L-01275 UCEC RNA-Seq tumor CPT0073690001 20210729_P3_D4_WB7988-Plate3_S40_R2_001.fastq.gz 5905290807 FASTQ unaligned CPTAC3 34921176-558d-46f8-9cf2-ed74cebffb7b b944db3781bb90a1ab66ae388e4f9e11 +C3L-01275.RNA-Seq.transcriptome.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073690001 b47cfdde-069c-44e0-87bb-48d83c744a78.rna_seq.transcriptome.gdc_realn.bam 4975839940 BAM transcriptome harmonized CPTAC3 169e8e1d-d016-49a9-9a8a-75200752f4bc ab0a78884707a3620496d2c06413655b { 'aliquot_tag': 'ALQ_8fa4fdb3', 'gdc_sample_type': 'Primary Tumor' } C3L-01275.RNA-Seq.transcriptome.T.hg38 C3L-01275 UCEC RNA-Seq tumor CPT0073730006 813e5846-10fb-4ba9-bcc9-03be00305d6e.rna_seq.transcriptome.gdc_realn.bam 11206180008 BAM transcriptome harmonized CPTAC3 ab655e77-80b7-4fe5-8014-538f00f27fe0 4b25a9c7d2f4586457825e9c8f2f4ac4 { 'aliquot_tag': 'ALQ_902ca314', 'gdc_sample_type': 'Primary Tumor' } C3L-01275.WGS.N C3L-01275 UCEC WGS blood_normal CPT0073760002 CPT0073760002.WholeGenome.RP-1303.bam 71113217665 BAM aligned CPTAC3 f76c6579-cf1d-4c7f-b9da-4f1c6b66c6df dba684d8f37b16c150b837d1edcd7fbb { 'aliquot_tag': 'ALQ_5fa1e87d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01275.WGS.N.hg38 C3L-01275 UCEC WGS blood_normal CPT0073760002 069a9d12-aaae-41f8-bcb3-4b2de10d0aec_gdc_realn.bam 105241008960 BAM harmonized CPTAC3 269d555e-a19b-42bf-81bf-4e0c26c978a4 4ef6c5da9891e5c0362335a7b2ef973d { 'aliquot_tag': 'ALQ_5fa1e87d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6301,18 +6893,21 @@ C3L-01277.miRNA-Seq.A C3L-01277 UCEC miRNA-Seq tissue_normal CPT0093180006 18111 C3L-01277.miRNA-Seq.A.hg38 C3L-01277 UCEC miRNA-Seq tissue_normal CPT0093180006 5af1a647-cc68-4174-b107-bbb8abbeb296_mirnaseq_gdc_realn.bam 333047883 BAM harmonized CPTAC3 0cdf7d00-7f77-4dfe-ba9f-0f6927394f21 e9cd00ea186f973c6bda77ae6a270701 { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01277.miRNA-Seq.T C3L-01277 UCEC miRNA-Seq tumor CPT0093170006 180724_UNC32-K00270_0106_BHWK3MBBXX_TCCCGA_S21_L007_R1_001.unaln.bam 197025026 BAM unaligned CPTAC3 99fcdb54-5c29-4a88-bee5-6e77f57e76f0 584a6bcc7449e0d9543a89b3fd561a18 { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor' } C3L-01277.miRNA-Seq.T.hg38 C3L-01277 UCEC miRNA-Seq tumor CPT0093170006 49236849-0f5c-4cbd-a4a6-80215dc69604_mirnaseq_gdc_realn.bam 207749386 BAM harmonized CPTAC3 450c193b-64d6-4465-afb4-7973f0bb8238 daff1337250a85cd6b585335a2e09b86 { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01277.RNA-Seq.chimeric.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 4c456c2b-3ee3-4298-89f1-e14f755dca07.rna_seq.chimeric.gdc_realn.bam 45286323 BAM chimeric harmonized CPTAC3 9d7360e6-c00f-4d58-b882-5c590260d28a 5dc90c16958430e9349b8406ffe4283a { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01277.RNA-Seq.chimeric.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 8ba80801-bbc2-4de0-afa7-ad1c78a47692.rna_seq.chimeric.gdc_realn.bam 71917987 BAM chimeric harmonized CPTAC3 a2399d78-42f0-4304-be20-73643eecdc52 1537fc445b8f5c0369452ebe471314ee { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01277.RNA-Seq.genomic.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 4c456c2b-3ee3-4298-89f1-e14f755dca07.rna_seq.genomic.gdc_realn.bam 8813323386 BAM genomic harmonized CPTAC3 a052b208-245c-4170-85a4-8a6dbd6f62d3 9e9fac49ab7a310100d631d2b2df7e96 { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01277.RNA-Seq.genomic.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 8ba80801-bbc2-4de0-afa7-ad1c78a47692.rna_seq.genomic.gdc_realn.bam 11022451314 BAM genomic harmonized CPTAC3 c99c5a0e-9d28-4f34-b894-f2dc99fafad6 a9c369f6e9ce2dbe9ca97115f77b63f8 { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01277.RNA-Seq.R1_L002.A C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 4011758070 FASTQ R1_L002 unaligned CPTAC3 17b6bccb-914a-478f-90f9-4058651af31f 4e55fd03effbd2517d6418ff0a76484e { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01277.RNA-Seq.R1_L006.T C3L-01277 UCEC RNA-Seq tumor CPT0093170006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L006_R1_001.fastq.gz 5322892009 FASTQ R1_L006 unaligned CPTAC3 63924d9c-a45f-4223-9e38-6970fea9b0d7 30f50f35f2e1590425d71e5ce8ff74d7 { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01277.RNA-Seq.R1_.T C3L-01277 UCEC RNA-Seq tumor CPT0093150001 20210723_P2_B5_WB7988-plate2_S17_R1_001.fastq.gz 6550911602 FASTQ R1_ unaligned CPTAC3 22f78b1b-1060-4f26-9f8a-05805179ede5 c7abaef3612ab638d26436cbfb291d74 { 'aliquot_tag': 'ALQ_42db3238', 'gdc_sample_type': 'Primary Tumor' } -C3L-01277.RNA-Seq.R2_L002.A C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4417437742 FASTQ R2_L002 unaligned CPTAC3 e84ff705-b0c1-4d60-80c5-2c343ff44b85 a650e62dc665e325a620c365120cc6af { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01277.RNA-Seq.R2_L006.T C3L-01277 UCEC RNA-Seq tumor CPT0093170006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L006_R2_001.fastq.gz 5627790362 FASTQ R2_L006 unaligned CPTAC3 48205079-1e88-4dba-a40b-04f5a828438b 3c282e6cb12748c6a9412001cee04238 { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01277.RNA-Seq.R2_.T C3L-01277 UCEC RNA-Seq tumor CPT0093150001 20210723_P2_B5_WB7988-plate2_S17_R2_001.fastq.gz 6658284782 FASTQ R2_ unaligned CPTAC3 e4971913-2357-4935-925d-992233dc2d90 bafbb7de3dbd33d0123489c52bb399cd { 'aliquot_tag': 'ALQ_42db3238', 'gdc_sample_type': 'Primary Tumor' } -C3L-01277.RNA-Seq.transcriptome.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 4c456c2b-3ee3-4298-89f1-e14f755dca07.rna_seq.transcriptome.gdc_realn.bam 9122888938 BAM transcriptome harmonized CPTAC3 f5d218a1-7c60-4966-b207-e396b91db485 7bc74cb97a5e652823d8fafebdf35b98 { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01277.RNA-Seq.transcriptome.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 8ba80801-bbc2-4de0-afa7-ad1c78a47692.rna_seq.transcriptome.gdc_realn.bam 10798151591 BAM transcriptome harmonized CPTAC3 72244d48-f5e5-4bf2-8f55-18213883b8e2 806d2538510b14676a84fe17874036b5 { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01277.RNA-Seq.chimeric.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 6f3499fe-81c6-4c4f-9f13-d41efbc2a119.rna_seq.chimeric.gdc_realn.bam 45253936 BAM chimeric harmonized CPTAC3 f912b67c-d2c7-425f-8985-cd13419859ad 61654022ef03ade4fce287ec0b5d96f6 { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01277.RNA-Seq.chimeric.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093150001 325cd823-5536-42b7-b445-f3ae05fe5846.rna_seq.chimeric.gdc_realn.bam 220263486 BAM chimeric harmonized CPTAC3 2fd1d141-4747-4143-bd80-7a4d323f51e8 7d2593e57b95dc7bccce8884effb2410 { 'aliquot_tag': 'ALQ_42db3238', 'gdc_sample_type': 'Primary Tumor' } +C3L-01277.RNA-Seq.chimeric.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 39dcb5cd-2514-4a7f-a8d2-e87de6a73dc4.rna_seq.chimeric.gdc_realn.bam 71902090 BAM chimeric harmonized CPTAC3 63d25305-dd52-4c32-b28b-840244a26b6e a39c4834ba1ca7bc7f3ffc23ad52a5dd { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01277.RNA-Seq.genomic.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 6f3499fe-81c6-4c4f-9f13-d41efbc2a119.rna_seq.genomic.gdc_realn.bam 8814124542 BAM genomic harmonized CPTAC3 18911020-a935-49cf-ad84-ccbe534b572b 2dfc23b8aa544193566b9e64cc20731a { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01277.RNA-Seq.genomic.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093150001 325cd823-5536-42b7-b445-f3ae05fe5846.rna_seq.genomic.gdc_realn.bam 10646099031 BAM genomic harmonized CPTAC3 d880a5d3-9b55-4e5a-ac52-7ee767cfc3f3 88cdee32b09c5573670bff234ab86f34 { 'aliquot_tag': 'ALQ_42db3238', 'gdc_sample_type': 'Primary Tumor' } +C3L-01277.RNA-Seq.genomic.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 39dcb5cd-2514-4a7f-a8d2-e87de6a73dc4.rna_seq.genomic.gdc_realn.bam 11023109274 BAM genomic harmonized CPTAC3 bec4273a-cba7-4f84-ba67-7036f06841af ac48e5d37618b1786b3a8b1600b79c1d { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01277.RNA-Seq.R1_L002.A C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 4011758070 FASTQ R1_L002 unaligned CPTAC3 17b6bccb-914a-478f-90f9-4058651af31f 4e55fd03effbd2517d6418ff0a76484e { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01277.RNA-Seq.R1_L006.T C3L-01277 UCEC RNA-Seq tumor CPT0093170006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L006_R1_001.fastq.gz 5322892009 FASTQ R1_L006 unaligned CPTAC3 63924d9c-a45f-4223-9e38-6970fea9b0d7 30f50f35f2e1590425d71e5ce8ff74d7 { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01277.RNA-Seq.R2_L002.A C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 4417437742 FASTQ R2_L002 unaligned CPTAC3 e84ff705-b0c1-4d60-80c5-2c343ff44b85 a650e62dc665e325a620c365120cc6af { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01277.RNA-Seq.R2_L006.T C3L-01277 UCEC RNA-Seq tumor CPT0093170006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L006_R2_001.fastq.gz 5627790362 FASTQ R2_L006 unaligned CPTAC3 48205079-1e88-4dba-a40b-04f5a828438b 3c282e6cb12748c6a9412001cee04238 { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01277.RNA-Seq.T C3L-01277 UCEC RNA-Seq tumor CPT0093150001 20210723_P2_B5_WB7988-plate2_S17_R1_001.fastq.gz 6550911602 FASTQ unaligned CPTAC3 22f78b1b-1060-4f26-9f8a-05805179ede5 c7abaef3612ab638d26436cbfb291d74 +C3L-01277.RNA-Seq.T C3L-01277 UCEC RNA-Seq tumor CPT0093150001 20210723_P2_B5_WB7988-plate2_S17_R2_001.fastq.gz 6658284782 FASTQ unaligned CPTAC3 e4971913-2357-4935-925d-992233dc2d90 bafbb7de3dbd33d0123489c52bb399cd +C3L-01277.RNA-Seq.transcriptome.A.hg38 C3L-01277 UCEC RNA-Seq tissue_normal CPT0093180006 6f3499fe-81c6-4c4f-9f13-d41efbc2a119.rna_seq.transcriptome.gdc_realn.bam 10530454755 BAM transcriptome harmonized CPTAC3 12f28388-aa08-4eaf-b273-01e85a939ea4 1b8990983173549bcc6d112881be80ec { 'aliquot_tag': 'ALQ_242f632a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01277.RNA-Seq.transcriptome.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093150001 325cd823-5536-42b7-b445-f3ae05fe5846.rna_seq.transcriptome.gdc_realn.bam 5162538711 BAM transcriptome harmonized CPTAC3 8fcbd240-efee-4550-8232-9da147340319 527eb346842dff88c2d1e159faeb5069 { 'aliquot_tag': 'ALQ_42db3238', 'gdc_sample_type': 'Primary Tumor' } +C3L-01277.RNA-Seq.transcriptome.T.hg38 C3L-01277 UCEC RNA-Seq tumor CPT0093170006 39dcb5cd-2514-4a7f-a8d2-e87de6a73dc4.rna_seq.transcriptome.gdc_realn.bam 12386909355 BAM transcriptome harmonized CPTAC3 0dceb543-1b4c-4091-a680-9bef508cb1a2 6b85539b48b296000eae70989f7e5480 { 'aliquot_tag': 'ALQ_a67ff4fb', 'gdc_sample_type': 'Primary Tumor' } C3L-01277.WGS.N C3L-01277 UCEC WGS blood_normal CPT0093220002 CPT0093220002.WholeGenome.RP-1303.bam 58733749970 BAM aligned CPTAC3 4889c188-fb41-42db-8018-99fe16ff5545 7f50e38fabdd8dd4f5a2716f4b19c87e { 'aliquot_tag': 'ALQ_ef66cd3c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01277.WGS.N.hg38 C3L-01277 UCEC WGS blood_normal CPT0093220002 3c638e9f-be3f-4094-81b6-f66e67e4ce03_wgs_gdc_realn.bam 84968599555 BAM harmonized CPTAC3 7aa49cd4-a2b8-4263-910d-bef68dade24d 9b2e49c2edbf90e008a88da24eb7d815 { 'aliquot_tag': 'ALQ_ef66cd3c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01277.WGS.T C3L-01277 UCEC WGS tumor CPT0093170009 CPT0093170009.WholeGenome.RP-1303.bam 76600796882 BAM aligned CPTAC3 2b16171b-081d-45e9-b06e-981f863c4a87 ae237973164a1a6e49869600931f02e3 { 'aliquot_tag': 'ALQ_36c0e96a', 'gdc_sample_type': 'Primary Tumor' } @@ -6329,16 +6924,16 @@ C3L-01279.miRNA-Seq.A C3L-01279 CCRCC miRNA-Seq tissue_normal CPT0104170009 1811 C3L-01279.miRNA-Seq.A.hg38 C3L-01279 CCRCC miRNA-Seq tissue_normal CPT0104170009 3e319e8a-911b-4d22-a27b-e9889f3c8f8f_mirnaseq_gdc_realn.bam 308417943 BAM harmonized CPTAC3 dc42a43d-7456-43f0-b2e7-beebe76bfa14 0fc04401cb67559d0d0400eeb7aeaa9e { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01279.miRNA-Seq.T C3L-01279 CCRCC miRNA-Seq tumor CPT0104160006 181108_UNC31-K00269_0163_BH23TVBBXY_CATGGC_S34_L007_R1_001.unaln.bam 165457148 BAM unaligned CPTAC3 9067e0e8-fc5e-4f77-ba22-41d4f2a0d353 4e47ac0f1e1044996c2f79509d4e733b { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor' } C3L-01279.miRNA-Seq.T.hg38 C3L-01279 CCRCC miRNA-Seq tumor CPT0104160006 4184687b-7cad-4881-a135-03bc99541f09_mirnaseq_gdc_realn.bam 178914838 BAM harmonized CPTAC3 10a85ba2-27d3-4c41-9b9e-42bc3cad5a40 4bca88e088464e077d3bae3aeb96e2ed { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor' } -C3L-01279.RNA-Seq.chimeric.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 f86c1d7f-8c13-45c7-bb6c-8e9fa9fcb985.rna_seq.chimeric.gdc_realn.bam 37421165 BAM chimeric harmonized CPTAC3 a0c21f9c-71e5-4647-8d7a-b742d58a3cc7 0757d44e4afb31fbf59fa3bcc8150cd8 { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01279.RNA-Seq.chimeric.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 37d4400d-e28b-4fd1-8588-73d33cbfe2fb.rna_seq.chimeric.gdc_realn.bam 32249742 BAM chimeric harmonized CPTAC3 dded045e-37f3-405d-97c8-af8c43874568 836f210bfba165b5accdf85f36c611c3 { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor' } -C3L-01279.RNA-Seq.genomic.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 f86c1d7f-8c13-45c7-bb6c-8e9fa9fcb985.rna_seq.genomic.gdc_realn.bam 7987090206 BAM genomic harmonized CPTAC3 d91a30b3-ebf4-44a5-8066-20fab087a57a 7d2b53190c7e47d6e6d9fb9acda4174a { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01279.RNA-Seq.genomic.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 37d4400d-e28b-4fd1-8588-73d33cbfe2fb.rna_seq.genomic.gdc_realn.bam 8750651846 BAM genomic harmonized CPTAC3 6d24f9ea-5577-4668-8a35-4c8a19a35aa1 178fd2a2ced2ca1943539524dd3b68e0 { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor' } -C3L-01279.RNA-Seq.R1_L001.A C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L001_R1_001.fastq.gz 3400040430 FASTQ R1_L001 unaligned CPTAC3 870735e3-75f8-488e-af4e-7a82e32779b9 b130ebf753bfadbf68933f6473e44853 { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01279.RNA-Seq.R1_L008.T C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4227581240 FASTQ R1_L008 unaligned CPTAC3 530e230a-03eb-4b12-9d82-26ddff07506f 82ea9c629def27c9075968c6262cb450 { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor' } -C3L-01279.RNA-Seq.R2_L001.A C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L001_R2_001.fastq.gz 3828397539 FASTQ R2_L001 unaligned CPTAC3 202b2906-4d82-4826-9f5a-3c346d5c472d 050c0a68c2161b5f9c7f5a17f8190a55 { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01279.RNA-Seq.R2_L008.T C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4627360370 FASTQ R2_L008 unaligned CPTAC3 66952eeb-be7d-4534-bf10-ca74c617ff26 fb4866af1384780e7ad4d0680f61f75b { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor' } -C3L-01279.RNA-Seq.transcriptome.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 f86c1d7f-8c13-45c7-bb6c-8e9fa9fcb985.rna_seq.transcriptome.gdc_realn.bam 7543215038 BAM transcriptome harmonized CPTAC3 8016f2ef-a9bb-4aff-9eee-9fa0aab28124 0952ab60993c902b3bde20321ff38f6c { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01279.RNA-Seq.transcriptome.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 37d4400d-e28b-4fd1-8588-73d33cbfe2fb.rna_seq.transcriptome.gdc_realn.bam 10101984193 BAM transcriptome harmonized CPTAC3 21a8498d-79e2-4874-8f2e-5895c11acefb 8db38d2764e6f638e9a46b06cb820ab9 { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor' } +C3L-01279.RNA-Seq.chimeric.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 fb68f2f9-3445-4cdc-90c6-bf4b5a87e963.rna_seq.chimeric.gdc_realn.bam 37390527 BAM chimeric harmonized CPTAC3 9451df8c-e07f-4330-b8dc-edf00f12d6f7 f1f28fec227d05d404c94f96f87f7fa4 { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01279.RNA-Seq.chimeric.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 622c7a82-5fac-45c4-a689-f58fb4f124e9.rna_seq.chimeric.gdc_realn.bam 32234199 BAM chimeric harmonized CPTAC3 5db9a400-b665-4d9a-a451-3e2ef9317d16 617a517900e02428590948975cfc6e7c { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor' } +C3L-01279.RNA-Seq.genomic.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 fb68f2f9-3445-4cdc-90c6-bf4b5a87e963.rna_seq.genomic.gdc_realn.bam 7988193379 BAM genomic harmonized CPTAC3 8980f50b-d5f9-4428-bb66-ad4bdcd1ab8f fc992719e0f6d44c3c3c3afb8e462ea7 { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01279.RNA-Seq.genomic.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 622c7a82-5fac-45c4-a689-f58fb4f124e9.rna_seq.genomic.gdc_realn.bam 8751377407 BAM genomic harmonized CPTAC3 61c93a62-8bae-4348-a552-6b4e7e68c4d3 1071f4f80c7cd7daf7e2c3fc3d3c4a35 { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor' } +C3L-01279.RNA-Seq.R1_L001.A C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L001_R1_001.fastq.gz 3400040430 FASTQ R1_L001 unaligned CPTAC3 870735e3-75f8-488e-af4e-7a82e32779b9 b130ebf753bfadbf68933f6473e44853 { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-01279.RNA-Seq.R1_L008.T C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4227581240 FASTQ R1_L008 unaligned CPTAC3 530e230a-03eb-4b12-9d82-26ddff07506f 82ea9c629def27c9075968c6262cb450 { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01279.RNA-Seq.R2_L001.A C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L001_R2_001.fastq.gz 3828397539 FASTQ R2_L001 unaligned CPTAC3 202b2906-4d82-4826-9f5a-3c346d5c472d 050c0a68c2161b5f9c7f5a17f8190a55 { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-01279.RNA-Seq.R2_L008.T C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4627360370 FASTQ R2_L008 unaligned CPTAC3 66952eeb-be7d-4534-bf10-ca74c617ff26 fb4866af1384780e7ad4d0680f61f75b { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-01279.RNA-Seq.transcriptome.A.hg38 C3L-01279 CCRCC RNA-Seq tissue_normal CPT0104170009 fb68f2f9-3445-4cdc-90c6-bf4b5a87e963.rna_seq.transcriptome.gdc_realn.bam 8631925290 BAM transcriptome harmonized CPTAC3 9b5ee0c6-1239-4a68-aa74-863eb49157c4 2a225a010f766e73913ff8920e6937a7 { 'aliquot_tag': 'ALQ_fb53d88c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01279.RNA-Seq.transcriptome.T.hg38 C3L-01279 CCRCC RNA-Seq tumor CPT0104160006 622c7a82-5fac-45c4-a689-f58fb4f124e9.rna_seq.transcriptome.gdc_realn.bam 11538013499 BAM transcriptome harmonized CPTAC3 d9054789-6efe-4791-99c8-4c7f42e5bb34 5c812fa0d2ec183b4afbf3a591b103dc { 'aliquot_tag': 'ALQ_568cecad', 'gdc_sample_type': 'Primary Tumor' } C3L-01279.WGS.A C3L-01279 CCRCC WGS tissue_normal CPT0104170006 CPT0104170006.WholeGenome.RP-1303.bam 54572911192 BAM aligned CPTAC3 05c884d8-efe8-4fd9-baa1-09ae55d49619 3ec2e75ccd8ed3536235b0d0206c6539 { 'aliquot_tag': 'ALQ_6becc51d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01279.WGS.A.hg38 C3L-01279 CCRCC WGS tissue_normal CPT0104170006 891b282e-7f35-4107-ab81-dd592aae747d_wgs_gdc_realn.bam 80028293427 BAM harmonized CPTAC3 87baf592-72d8-4c27-ae81-5c9a34b9df2d 41d352e3385f54c9ebc2a4d7c62a5c2f { 'aliquot_tag': 'ALQ_6becc51d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01279.WGS.N C3L-01279 CCRCC WGS blood_normal CPT0105080002 CPT0105080002.WholeGenome.RP-1303.bam 66683602118 BAM aligned CPTAC3 c8da66cb-698f-42c2-b656-2ddf0412c6e1 49d9cdaa466d90a7281d552814c98e53 { 'aliquot_tag': 'ALQ_83fa4ec4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6361,12 +6956,12 @@ C3L-01281.miRNA-Seq.T C3L-01281 CCRCC miRNA-Seq tumor CPT0079480006 181012_UNC32 C3L-01281.miRNA-Seq.T.hg38 C3L-01281 CCRCC miRNA-Seq tumor CPT0079480006 ddea8669-9eb1-4bbc-a9e5-649178e0ecb7_mirnaseq_gdc_realn.bam 228024609 BAM harmonized CPTAC3 7713735b-7304-482d-8ba8-6487c0c1f3c0 5c43f4563c8c02d2d5cda6b0fb7501c2 { 'aliquot_tag': 'ALQ_c518bfe5', 'gdc_sample_type': 'Primary Tumor' } C3L-01281.RNA-Seq.chimeric.A.hg38 C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 cf3ca833-9e5c-4ad4-812b-b342ecbc7523.rna_seq.chimeric.gdc_realn.bam 71283780 BAM chimeric harmonized CPTAC3 8d121a08-3e6e-4b95-90c6-25b22fa9cbdd 577ce2f4116322b6126929212e95d1ce { 'aliquot_tag': 'ALQ_3540e31', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01281.RNA-Seq.chimeric.T.hg38 C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 a9a490e8-09ea-44c6-9c70-896a9f1569da.rna_seq.chimeric.gdc_realn.bam 163461926 BAM chimeric harmonized CPTAC3 96e56b01-4c53-48de-95e6-bda491a1dbc9 2ab6c6493220c7b42f2e98a98e2c013d { 'aliquot_tag': 'ALQ_c518bfe5', 'gdc_sample_type': 'Primary Tumor' } -C3L-01281.RNA-Seq.genomic.A.hg38 C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 cf3ca833-9e5c-4ad4-812b-b342ecbc7523.rna_seq.genomic.gdc_realn.bam 8012830528 BAM genomic harmonized CPTAC3 6b0329a8-2a33-462f-8fed-f913854d13df 87d3cfd7d40b2ef947a7d7c7c5613fa5 { 'aliquot_tag': 'ALQ_3540e31', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01281.RNA-Seq.genomic.A.hg38 C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 cf3ca833-9e5c-4ad4-812b-b342ecbc7523.rna_seq.genomic.gdc_realn.bam 8012830528 BAM genomic harmonized CPTAC3 9b05f2b1-b83b-4baf-8c93-b0cd4202a813 87d3cfd7d40b2ef947a7d7c7c5613fa5 { 'aliquot_tag': 'ALQ_3540e31', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01281.RNA-Seq.genomic.T.hg38 C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 a9a490e8-09ea-44c6-9c70-896a9f1569da.rna_seq.genomic.gdc_realn.bam 6898729666 BAM genomic harmonized CPTAC3 2086af95-28ee-420f-a171-1926ac1648b8 963338855e86f9cc0b2fad6730487d00 { 'aliquot_tag': 'ALQ_c518bfe5', 'gdc_sample_type': 'Primary Tumor' } -C3L-01281.RNA-Seq.R1_L005.T C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACAGTG_S19_L005_R1_001.fastq.gz 3586263589 FASTQ R1_L005 unaligned CPTAC3 bb1a5e66-0f58-405f-892f-6734850101b3 9170f2f88db5ebbcc42d352ccc68184a { 'aliquot_tag': 'ALQ_c518bfe5', 'gdc_sample_type': 'Primary Tumor' } -C3L-01281.RNA-Seq.R1_L006.A C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L006_R1_001.fastq.gz 4049717564 FASTQ R1_L006 unaligned CPTAC3 87a20970-f166-43c5-9f58-37ab02eb9c3e 189459a22de3fc3bac09f59f550c33da { 'aliquot_tag': 'ALQ_3540e31', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01281.RNA-Seq.R2_L005.T C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACAGTG_S19_L005_R2_001.fastq.gz 3921737446 FASTQ R2_L005 unaligned CPTAC3 fff48a4b-fe3e-4a6b-aca4-1a6086a61d98 f8b7dbb40850bd5ea21faec09683d2a5 { 'aliquot_tag': 'ALQ_c518bfe5', 'gdc_sample_type': 'Primary Tumor' } -C3L-01281.RNA-Seq.R2_L006.A C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L006_R2_001.fastq.gz 4494267024 FASTQ R2_L006 unaligned CPTAC3 29346dc3-bac8-4a23-9e20-d435e4b8ba61 75bceeca2ec62c4aaab7e815f357ad2b { 'aliquot_tag': 'ALQ_3540e31', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01281.RNA-Seq.R1_L005.T C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACAGTG_S19_L005_R1_001.fastq.gz 3586263589 FASTQ R1_L005 unaligned CPTAC3 bb1a5e66-0f58-405f-892f-6734850101b3 9170f2f88db5ebbcc42d352ccc68184a { 'aliquot_tag': 'ALQ_c518bfe5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01281.RNA-Seq.R1_L006.A C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L006_R1_001.fastq.gz 4049717564 FASTQ R1_L006 unaligned CPTAC3 87a20970-f166-43c5-9f58-37ab02eb9c3e 189459a22de3fc3bac09f59f550c33da { 'aliquot_tag': 'ALQ_3540e31', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-01281.RNA-Seq.R2_L005.T C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACAGTG_S19_L005_R2_001.fastq.gz 3921737446 FASTQ R2_L005 unaligned CPTAC3 fff48a4b-fe3e-4a6b-aca4-1a6086a61d98 f8b7dbb40850bd5ea21faec09683d2a5 { 'aliquot_tag': 'ALQ_c518bfe5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01281.RNA-Seq.R2_L006.A C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L006_R2_001.fastq.gz 4494267024 FASTQ R2_L006 unaligned CPTAC3 29346dc3-bac8-4a23-9e20-d435e4b8ba61 75bceeca2ec62c4aaab7e815f357ad2b { 'aliquot_tag': 'ALQ_3540e31', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3L-01281.RNA-Seq.transcriptome.A.hg38 C3L-01281 CCRCC RNA-Seq tissue_normal CPT0079510006 cf3ca833-9e5c-4ad4-812b-b342ecbc7523.rna_seq.transcriptome.gdc_realn.bam 10159928168 BAM transcriptome harmonized CPTAC3 044dce65-de28-4ff3-8e7e-a36524f9d839 e2d83b1358690b31138ed4a99062799b { 'aliquot_tag': 'ALQ_3540e31', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01281.RNA-Seq.transcriptome.T.hg38 C3L-01281 CCRCC RNA-Seq tumor CPT0079480006 a9a490e8-09ea-44c6-9c70-896a9f1569da.rna_seq.transcriptome.gdc_realn.bam 9818117886 BAM transcriptome harmonized CPTAC3 5155350a-ec77-4133-83a8-bada87304689 a07b9f321a52f90c4b113754986dae0d { 'aliquot_tag': 'ALQ_c518bfe5', 'gdc_sample_type': 'Primary Tumor' } C3L-01281.WGS.A C3L-01281 CCRCC WGS tissue_normal CPT0079510009 CPT0079510009.WholeGenome.RP-1303.bam 53481861821 BAM aligned CPTAC3 a34e7c15-55ce-4a4c-9117-1a1eb6492963 a6958c699d447cf71e5fef76471e8b21 { 'aliquot_tag': 'ALQ_93eb13a0', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -6389,16 +6984,19 @@ C3L-01282.miRNA-Seq.T C3L-01282 UCEC miRNA-Seq tumor CPT0077650009 181012_UNC32- C3L-01282.miRNA-Seq.T.hg38 C3L-01282 UCEC miRNA-Seq tumor CPT0077650009 d0e7ff6f-5eeb-434d-b37f-1cc2b1974b7f_mirnaseq_gdc_realn.bam 222539338 BAM harmonized CPTAC3 30ef5cb4-256d-401c-a270-2ca009809f12 349118fe0d15cbe00c02958098a094fd { 'aliquot_tag': 'ALQ_b0c0bc93', 'gdc_sample_type': 'Primary Tumor' } C3L-01282.RNA-Seq.chimeric.A.hg38 C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 094ba3bd-d6fe-49b9-a36f-4f9bb327dc9f.rna_seq.chimeric.gdc_realn.bam 187886582 BAM chimeric harmonized CPTAC3 a48dac8c-8a3b-40f0-af46-31c715c645f5 7b081299555c4180c11958bdc9239be5 { 'aliquot_tag': 'ALQ_67dfdbd2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01282.RNA-Seq.chimeric.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0077650009 f4bec82c-853b-4046-bff9-ef431cfe3d33.rna_seq.chimeric.gdc_realn.bam 45155422 BAM chimeric harmonized CPTAC3 125c907f-6175-4772-b7f2-ad909f233b4b 72fe1ef384edf3749bc088f2618ecfe6 { 'aliquot_tag': 'ALQ_b0c0bc93', 'gdc_sample_type': 'Primary Tumor' } -C3L-01282.RNA-Seq.genomic.A.hg38 C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 094ba3bd-d6fe-49b9-a36f-4f9bb327dc9f.rna_seq.genomic.gdc_realn.bam 9190073298 BAM genomic harmonized CPTAC3 3c406cee-3d84-483b-bf80-810f5fd1f8be 38b864c4bc13c259310ac6d7c21105e5 { 'aliquot_tag': 'ALQ_67dfdbd2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01282.RNA-Seq.genomic.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0077650009 f4bec82c-853b-4046-bff9-ef431cfe3d33.rna_seq.genomic.gdc_realn.bam 8427907700 BAM genomic harmonized CPTAC3 139a8d79-c91d-4894-8751-4faf59d8137d efa8360760378ae58c2c47739d132463 { 'aliquot_tag': 'ALQ_b0c0bc93', 'gdc_sample_type': 'Primary Tumor' } -C3L-01282.RNA-Seq.R1_L003.A C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L003_R1_001.fastq.gz 4353349155 FASTQ R1_L003 unaligned CPTAC3 b75aa815-18fc-4f67-8bd8-e80d70bf58d7 94f2cc6fa1864f9fdc6ce48bf85a9a85 { 'aliquot_tag': 'ALQ_67dfdbd2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01282.RNA-Seq.R1_L006.T C3L-01282 UCEC RNA-Seq tumor CPT0077650009 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3941841299 FASTQ R1_L006 unaligned CPTAC3 1055a2ed-0ffd-4a47-b98d-31f79271fecc 98ad26388ca7d1c301c5c2cd64b3bc0c { 'aliquot_tag': 'ALQ_b0c0bc93', 'gdc_sample_type': 'Primary Tumor' } -C3L-01282.RNA-Seq.R1_.T C3L-01282 UCEC RNA-Seq tumor CPT0349830001 20210714_P1_A3_WB7988_plate1_S3_R1_001.fastq.gz 7280251156 FASTQ R1_ unaligned CPTAC3 363597da-f27e-4aca-86a4-13194b2e28c3 950005b7bba3d0d583dc5faf5a8b3f08 { 'aliquot_tag': 'ALQ_ec6ce00a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01282.RNA-Seq.R2_L003.A C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L003_R2_001.fastq.gz 4791112274 FASTQ R2_L003 unaligned CPTAC3 6c986f25-4352-4b8d-9f37-2de28762849a 820d743011d3bedb801b2963f942c7d3 { 'aliquot_tag': 'ALQ_67dfdbd2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01282.RNA-Seq.R2_L006.T C3L-01282 UCEC RNA-Seq tumor CPT0077650009 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTCAA_S23_L006_R2_001.fastq.gz 4245797200 FASTQ R2_L006 unaligned CPTAC3 0d5983fb-0657-4a02-8a14-3606ea81b0d8 a63cd802cfa3c3163d50caa400b91656 { 'aliquot_tag': 'ALQ_b0c0bc93', 'gdc_sample_type': 'Primary Tumor' } -C3L-01282.RNA-Seq.R2_.T C3L-01282 UCEC RNA-Seq tumor CPT0349830001 20210714_P1_A3_WB7988_plate1_S3_R2_001.fastq.gz 7567392704 FASTQ R2_ unaligned CPTAC3 7d678625-0da7-4b47-9c0e-bbd21840b73d cfa90c94e61605bfed7e153d6e50172d { 'aliquot_tag': 'ALQ_ec6ce00a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01282.RNA-Seq.chimeric.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0349830001 a48f4d61-414b-4824-b12c-63771323b4d3.rna_seq.chimeric.gdc_realn.bam 235181996 BAM chimeric harmonized CPTAC3 fdf7a2a9-e7f8-4b56-847a-b0b42f967fd2 cce56632b1a15ec5d9f3b0350e98066e { 'aliquot_tag': 'ALQ_ec6ce00a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01282.RNA-Seq.genomic.A.hg38 C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 094ba3bd-d6fe-49b9-a36f-4f9bb327dc9f.rna_seq.genomic.gdc_realn.bam 9190073298 BAM genomic harmonized CPTAC3 9e179bc4-884b-4ae8-b7d3-2afa329f7895 38b864c4bc13c259310ac6d7c21105e5 { 'aliquot_tag': 'ALQ_67dfdbd2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01282.RNA-Seq.genomic.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0077650009 f4bec82c-853b-4046-bff9-ef431cfe3d33.rna_seq.genomic.gdc_realn.bam 8427907700 BAM genomic harmonized CPTAC3 25175c36-6361-4908-997a-838eacef7bf5 efa8360760378ae58c2c47739d132463 { 'aliquot_tag': 'ALQ_b0c0bc93', 'gdc_sample_type': 'Primary Tumor' } +C3L-01282.RNA-Seq.genomic.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0349830001 a48f4d61-414b-4824-b12c-63771323b4d3.rna_seq.genomic.gdc_realn.bam 11489593331 BAM genomic harmonized CPTAC3 e7b90a57-4b21-4cd9-8ba4-7fa8f8a4021a 69e57383c3a32beef6e714767ab893bc { 'aliquot_tag': 'ALQ_ec6ce00a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01282.RNA-Seq.R1_L003.A C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L003_R1_001.fastq.gz 4353349155 FASTQ R1_L003 unaligned CPTAC3 b75aa815-18fc-4f67-8bd8-e80d70bf58d7 94f2cc6fa1864f9fdc6ce48bf85a9a85 { 'aliquot_tag': 'ALQ_67dfdbd2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-01282.RNA-Seq.R1_L006.T C3L-01282 UCEC RNA-Seq tumor CPT0077650009 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3941841299 FASTQ R1_L006 unaligned CPTAC3 1055a2ed-0ffd-4a47-b98d-31f79271fecc 98ad26388ca7d1c301c5c2cd64b3bc0c { 'aliquot_tag': 'ALQ_b0c0bc93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01282.RNA-Seq.R2_L003.A C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L003_R2_001.fastq.gz 4791112274 FASTQ R2_L003 unaligned CPTAC3 6c986f25-4352-4b8d-9f37-2de28762849a 820d743011d3bedb801b2963f942c7d3 { 'aliquot_tag': 'ALQ_67dfdbd2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-01282.RNA-Seq.R2_L006.T C3L-01282 UCEC RNA-Seq tumor CPT0077650009 170908_UNC31-K00269_0080_BHLJ52BBXX_AGTCAA_S23_L006_R2_001.fastq.gz 4245797200 FASTQ R2_L006 unaligned CPTAC3 0d5983fb-0657-4a02-8a14-3606ea81b0d8 a63cd802cfa3c3163d50caa400b91656 { 'aliquot_tag': 'ALQ_b0c0bc93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01282.RNA-Seq.T C3L-01282 UCEC RNA-Seq tumor CPT0349830001 20210714_P1_A3_WB7988_plate1_S3_R1_001.fastq.gz 7280251156 FASTQ unaligned CPTAC3 363597da-f27e-4aca-86a4-13194b2e28c3 950005b7bba3d0d583dc5faf5a8b3f08 +C3L-01282.RNA-Seq.T C3L-01282 UCEC RNA-Seq tumor CPT0349830001 20210714_P1_A3_WB7988_plate1_S3_R2_001.fastq.gz 7567392704 FASTQ unaligned CPTAC3 7d678625-0da7-4b47-9c0e-bbd21840b73d cfa90c94e61605bfed7e153d6e50172d C3L-01282.RNA-Seq.transcriptome.A.hg38 C3L-01282 UCEC RNA-Seq tissue_normal CPT0077660006 094ba3bd-d6fe-49b9-a36f-4f9bb327dc9f.rna_seq.transcriptome.gdc_realn.bam 11138518448 BAM transcriptome harmonized CPTAC3 9b173ff0-3d39-49b3-a29e-2ba275bb95e6 7bf3826eee47b1ae6a9bc1c0cbbcbaf6 { 'aliquot_tag': 'ALQ_67dfdbd2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01282.RNA-Seq.transcriptome.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0077650009 f4bec82c-853b-4046-bff9-ef431cfe3d33.rna_seq.transcriptome.gdc_realn.bam 8911439619 BAM transcriptome harmonized CPTAC3 8511d705-71c0-4633-bce6-feeb6414bde9 8d5c0639f8d7d25e0c65374c5ad1ca30 { 'aliquot_tag': 'ALQ_b0c0bc93', 'gdc_sample_type': 'Primary Tumor' } +C3L-01282.RNA-Seq.transcriptome.T.hg38 C3L-01282 UCEC RNA-Seq tumor CPT0349830001 a48f4d61-414b-4824-b12c-63771323b4d3.rna_seq.transcriptome.gdc_realn.bam 6443706109 BAM transcriptome harmonized CPTAC3 ec9bc92d-e0ec-4b75-9d13-0699cfb26b53 733a829ea73281df5045115e908b50ec { 'aliquot_tag': 'ALQ_ec6ce00a', 'gdc_sample_type': 'Primary Tumor' } C3L-01282.WGS.A C3L-01282 UCEC WGS tissue_normal CPT0077660009 CPT0077660009.WholeGenome.RP-1303.bam 62732216484 BAM aligned CPTAC3 cbcb4407-f6ba-411a-aeac-9dce5be9de95 9cec5c4cef03838759f3393ccda2e0fb { 'aliquot_tag': 'ALQ_f760c643', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01282.WGS.A.hg38 C3L-01282 UCEC WGS tissue_normal CPT0077660009 ecb5ce69-21c6-425d-bdb6-11324b8875f9_wgs_gdc_realn.bam 92021527934 BAM harmonized CPTAC3 b9bf3672-ae78-450d-a3e9-76ce6611866c b8dc4a536cc0a6e887f257e7fce741e7 { 'aliquot_tag': 'ALQ_f760c643', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01282.WGS.N C3L-01282 UCEC WGS blood_normal CPT0080070001 CPT0080070001.WholeGenome.RP-1303.bam 71596914409 BAM aligned CPTAC3 7fc79f05-0d6b-4279-82d2-d9730cbffef7 213513cf3c1644afde1daac0350fa9df { 'aliquot_tag': 'ALQ_e05a8fe', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6417,8 +7015,8 @@ C3L-01283.miRNA-Seq.T C3L-01283 CCRCC miRNA-Seq tumor CPT0079380006 181012_UNC32 C3L-01283.miRNA-Seq.T.hg38 C3L-01283 CCRCC miRNA-Seq tumor CPT0079380006 f2f944fa-496c-4caa-a09f-b9f4f91a264e_mirnaseq_gdc_realn.bam 253663718 BAM harmonized CPTAC3 ca111531-0ab0-4185-8157-58bc231d7545 0e4707a32faa2194978f6a4dcb52c2cf { 'aliquot_tag': 'ALQ_d81d8f5d', 'gdc_sample_type': 'Primary Tumor' } C3L-01283.RNA-Seq.chimeric.T.hg38 C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 41ac5f62-3016-426b-887b-4afd6575cd77.rna_seq.chimeric.gdc_realn.bam 134928172 BAM chimeric harmonized CPTAC3 22cc5a7b-bb23-452b-bad9-90eb3557d522 e692fab237da8bd2231eaa794cf00545 { 'aliquot_tag': 'ALQ_d81d8f5d', 'gdc_sample_type': 'Primary Tumor' } C3L-01283.RNA-Seq.genomic.T.hg38 C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 41ac5f62-3016-426b-887b-4afd6575cd77.rna_seq.genomic.gdc_realn.bam 7242651177 BAM genomic harmonized CPTAC3 cdd2074f-1d25-494e-8b0a-7d7dd0c21ffd 4fbd8f8a020da978327fe555254501ca { 'aliquot_tag': 'ALQ_d81d8f5d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01283.RNA-Seq.R1_L004.T C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 170905_UNC31-K00269_0079_AHLCF7BBXX_TTAGGC_S13_L004_R1_001.fastq.gz 3706511563 FASTQ R1_L004 unaligned CPTAC3 4cd023ec-9cf8-4808-a620-5ba0a21f54ae c8291f0af138ab346dbd453084d5cf4d { 'aliquot_tag': 'ALQ_d81d8f5d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01283.RNA-Seq.R2_L004.T C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 170905_UNC31-K00269_0079_AHLCF7BBXX_TTAGGC_S13_L004_R2_001.fastq.gz 3998841470 FASTQ R2_L004 unaligned CPTAC3 56176ec2-2e38-4022-b4aa-3bd26b8a9b89 5d15ad34118c975659b71dfcce824d32 { 'aliquot_tag': 'ALQ_d81d8f5d', 'gdc_sample_type': 'Primary Tumor' } +C3L-01283.RNA-Seq.R1_L004.T C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 170905_UNC31-K00269_0079_AHLCF7BBXX_TTAGGC_S13_L004_R1_001.fastq.gz 3706511563 FASTQ R1_L004 unaligned CPTAC3 4cd023ec-9cf8-4808-a620-5ba0a21f54ae c8291f0af138ab346dbd453084d5cf4d { 'aliquot_tag': 'ALQ_d81d8f5d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01283.RNA-Seq.R2_L004.T C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 170905_UNC31-K00269_0079_AHLCF7BBXX_TTAGGC_S13_L004_R2_001.fastq.gz 3998841470 FASTQ R2_L004 unaligned CPTAC3 56176ec2-2e38-4022-b4aa-3bd26b8a9b89 5d15ad34118c975659b71dfcce824d32 { 'aliquot_tag': 'ALQ_d81d8f5d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01283.RNA-Seq.transcriptome.T.hg38 C3L-01283 CCRCC RNA-Seq tumor CPT0079380006 41ac5f62-3016-426b-887b-4afd6575cd77.rna_seq.transcriptome.gdc_realn.bam 9784353976 BAM transcriptome harmonized CPTAC3 ccd88077-b72e-479f-8a95-5dd43f85398d 15743111e10a56f61d9313ae524ca13d { 'aliquot_tag': 'ALQ_d81d8f5d', 'gdc_sample_type': 'Primary Tumor' } C3L-01283.WGS.N C3L-01283 CCRCC WGS blood_normal CPT0080120001 CPT0080120001.WholeGenome.RP-1303.bam 76650176414 BAM aligned CPTAC3 56c3411f-c3e5-4c4f-8e1c-ec6937e6126f 94ea3254c7e686bc825415197e1ae523 { 'aliquot_tag': 'ALQ_db9f42b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01283.WGS.N.hg38 C3L-01283 CCRCC WGS blood_normal CPT0080120001 e8c358f4-8994-4b68-aa8a-521b69eee0f9_gdc_realn.bam 113942588506 BAM harmonized CPTAC3 897b6ee0-2fdb-4563-af8e-ff9ffed0170e 74ba4854ed4b884ed344b4ac2f07a9bc { 'aliquot_tag': 'ALQ_db9f42b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6432,11 +7030,11 @@ C3L-01284.MethArray.Green.T C3L-01284 UCEC Methylation Array tumor CPT0079570009 C3L-01284.MethArray.Red.T C3L-01284 UCEC Methylation Array tumor CPT0079570009 202178770008_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 e65f4a87-58b3-4009-b172-bc3496ee1408 ab3884e330ae8bfe448cfec32c613400 { 'aliquot_tag': 'ALQ_1cabe600', 'gdc_sample_type': 'Primary Tumor' } C3L-01284.miRNA-Seq.T C3L-01284 UCEC miRNA-Seq tumor CPT0079570006 181012_UNC32-K00270_0124_AH223CBBXY_CAGGCG_S6_L001_R1_001.unaln.bam 251345394 BAM unaligned CPTAC3 2986921b-38fb-4b5c-826a-d1e682792a79 eb6112b9ff175ac32aa96fdf921f3a0d { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor' } C3L-01284.miRNA-Seq.T.hg38 C3L-01284 UCEC miRNA-Seq tumor CPT0079570006 59ad2a6f-989e-4d1d-9490-80a87f3de906_mirnaseq_gdc_realn.bam 276339389 BAM harmonized CPTAC3 b86b6bc1-6941-44f0-99d8-d55ccdb8df74 b3f93c277879093e265a1b4427f4026f { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor' } -C3L-01284.RNA-Seq.chimeric.T.hg38 C3L-01284 UCEC RNA-Seq tumor CPT0079570006 9b8e8092-5d65-44df-8e91-fd1371673eea.rna_seq.chimeric.gdc_realn.bam 161824829 BAM chimeric harmonized CPTAC3 d23066e2-094e-4982-a552-2c5f9e981796 2a37b2d831a673dd10aa6dbed34558d7 { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor' } -C3L-01284.RNA-Seq.genomic.T.hg38 C3L-01284 UCEC RNA-Seq tumor CPT0079570006 9b8e8092-5d65-44df-8e91-fd1371673eea.rna_seq.genomic.gdc_realn.bam 8085138640 BAM genomic harmonized CPTAC3 262d769d-9fc4-40a3-a6b3-00aceb6471bd c5f535a3b240c2af07b5f23e16879d62 { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor' } -C3L-01284.RNA-Seq.R1_L005.T C3L-01284 UCEC RNA-Seq tumor CPT0079570006 170905_UNC31-K00269_0079_AHLCF7BBXX_GCCAAT_S18_L005_R1_001.fastq.gz 4125869804 FASTQ R1_L005 unaligned CPTAC3 60c35ad5-8f48-49d5-b0a1-fb2f195c929d 4d622f223b620aa1d3b808ecef784bf5 { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor' } -C3L-01284.RNA-Seq.R2_L005.T C3L-01284 UCEC RNA-Seq tumor CPT0079570006 170905_UNC31-K00269_0079_AHLCF7BBXX_GCCAAT_S18_L005_R2_001.fastq.gz 4484646584 FASTQ R2_L005 unaligned CPTAC3 d69c5f9f-e4a8-4596-82e9-53b579863bda bed9718b9655170b3805bca36d9fdb28 { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor' } -C3L-01284.RNA-Seq.transcriptome.T.hg38 C3L-01284 UCEC RNA-Seq tumor CPT0079570006 9b8e8092-5d65-44df-8e91-fd1371673eea.rna_seq.transcriptome.gdc_realn.bam 10379700913 BAM transcriptome harmonized CPTAC3 d40f62b8-f815-4c91-b3ef-b8175e3ab1ea 1d78b3610dfd8d1366ee2d1a77479272 { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor' } +C3L-01284.RNA-Seq.chimeric.T.hg38 C3L-01284 UCEC RNA-Seq tumor CPT0079570006 27e154f8-84cc-462f-885c-1a707baa8d2e.rna_seq.chimeric.gdc_realn.bam 161797285 BAM chimeric harmonized CPTAC3 7da894b7-2b4d-48ab-9d94-3ed0b3f277b3 309b8f19d0c42fcbc83b93f6f1cf55e5 { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor' } +C3L-01284.RNA-Seq.genomic.T.hg38 C3L-01284 UCEC RNA-Seq tumor CPT0079570006 27e154f8-84cc-462f-885c-1a707baa8d2e.rna_seq.genomic.gdc_realn.bam 8086277558 BAM genomic harmonized CPTAC3 13e89eb5-488e-4b9a-9042-c12564076f9e 1ca5e01522df2deac31a55de03289027 { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor' } +C3L-01284.RNA-Seq.R1_L005.T C3L-01284 UCEC RNA-Seq tumor CPT0079570006 170905_UNC31-K00269_0079_AHLCF7BBXX_GCCAAT_S18_L005_R1_001.fastq.gz 4125869804 FASTQ R1_L005 unaligned CPTAC3 60c35ad5-8f48-49d5-b0a1-fb2f195c929d 4d622f223b620aa1d3b808ecef784bf5 { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01284.RNA-Seq.R2_L005.T C3L-01284 UCEC RNA-Seq tumor CPT0079570006 170905_UNC31-K00269_0079_AHLCF7BBXX_GCCAAT_S18_L005_R2_001.fastq.gz 4484646584 FASTQ R2_L005 unaligned CPTAC3 d69c5f9f-e4a8-4596-82e9-53b579863bda bed9718b9655170b3805bca36d9fdb28 { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01284.RNA-Seq.transcriptome.T.hg38 C3L-01284 UCEC RNA-Seq tumor CPT0079570006 27e154f8-84cc-462f-885c-1a707baa8d2e.rna_seq.transcriptome.gdc_realn.bam 11882237423 BAM transcriptome harmonized CPTAC3 f5f0e85a-b5fe-4f7b-91bd-47f4f4a1e07a 75b3772e0b32dea202c634fca0320d04 { 'aliquot_tag': 'ALQ_8c14fb91', 'gdc_sample_type': 'Primary Tumor' } C3L-01284.WGS.N C3L-01284 UCEC WGS blood_normal CPT0080140002 CPT0080140002.WholeGenome.RP-1303.bam 71632230379 BAM aligned CPTAC3 49959845-e20f-4f53-a952-6485cf23c4fb c481341c25ab7f474d384961cb0ca32d { 'aliquot_tag': 'ALQ_1bf05031', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01284.WGS.N.hg38 C3L-01284 UCEC WGS blood_normal CPT0080140002 3d32ea57-7403-4d6e-ad7a-c86faa54393d_gdc_realn.bam 106717353602 BAM harmonized CPTAC3 bd10e94b-b778-44a2-a1af-3caf087d274f 9a70d3892606637188943e28fa6093e7 { 'aliquot_tag': 'ALQ_1bf05031', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01284.WGS.T C3L-01284 UCEC WGS tumor CPT0079570009 CPT0079570009.WholeGenome.RP-1303.bam 71650540814 BAM aligned CPTAC3 abeb70b7-02b3-415d-9fff-13c1665fc10f 26a73a2298bd5de707039cd02cdf7ab0 { 'aliquot_tag': 'ALQ_1cabe600', 'gdc_sample_type': 'Primary Tumor' } @@ -6459,12 +7057,12 @@ C3L-01285.miRNA-Seq.T C3L-01285 LSCC miRNA-Seq tumor CPT0087190006 180724_UNC32- C3L-01285.miRNA-Seq.T.hg38 C3L-01285 LSCC miRNA-Seq tumor CPT0087190006 7ee852f2-56c1-424a-9699-50528125019c_mirnaseq_gdc_realn.bam 242606284 BAM harmonized CPTAC3 31b811ec-b22e-41e1-8dec-8b518a373e0a a109a9a16eca8b60f8af92cbee457e99 { 'aliquot_tag': 'ALQ_21aa6e17', 'gdc_sample_type': 'Primary Tumor' } C3L-01285.RNA-Seq.chimeric.A.hg38 C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 0077102a-1ae7-45c1-b9e9-bdde042b6c69.rna_seq.chimeric.gdc_realn.bam 33247562 BAM chimeric harmonized CPTAC3 9bfb1269-2950-4f6b-8c51-04cac43d7ae1 aafb806e90a2a964cc0c6e9635bae515 { 'aliquot_tag': 'ALQ_7f14ae9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01285.RNA-Seq.chimeric.T.hg38 C3L-01285 LSCC RNA-Seq tumor CPT0087190006 47b0ec16-d440-4400-991f-81793639324f.rna_seq.chimeric.gdc_realn.bam 43576811 BAM chimeric harmonized CPTAC3 fec913ce-39ee-4da5-aaef-0f9d499f5dfa 04361fec1e400b0558014187b6cfc476 { 'aliquot_tag': 'ALQ_21aa6e17', 'gdc_sample_type': 'Primary Tumor' } -C3L-01285.RNA-Seq.genomic.A.hg38 C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 0077102a-1ae7-45c1-b9e9-bdde042b6c69.rna_seq.genomic.gdc_realn.bam 6565682993 BAM genomic harmonized CPTAC3 c4dc227f-daf1-4781-aae4-24761c02f957 a8ee808331beb93d15126f90769fc476 { 'aliquot_tag': 'ALQ_7f14ae9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01285.RNA-Seq.genomic.T.hg38 C3L-01285 LSCC RNA-Seq tumor CPT0087190006 47b0ec16-d440-4400-991f-81793639324f.rna_seq.genomic.gdc_realn.bam 7522829351 BAM genomic harmonized CPTAC3 834cbfbb-c607-41df-a798-dfc72941d1c2 e02c6601d2460dee118a6ad0b35cf420 { 'aliquot_tag': 'ALQ_21aa6e17', 'gdc_sample_type': 'Primary Tumor' } -C3L-01285.RNA-Seq.R1_L002.T C3L-01285 LSCC RNA-Seq tumor CPT0087190006 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 3722565553 FASTQ R1_L002 unaligned CPTAC3 6d178311-7b59-4974-b5e1-96e7944378e3 3d72470d99eac46e53d57200c6818315 { 'aliquot_tag': 'ALQ_21aa6e17', 'gdc_sample_type': 'Primary Tumor' } -C3L-01285.RNA-Seq.R1_L003.A C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3037892491 FASTQ R1_L003 unaligned CPTAC3 3580e292-7009-461f-87fe-52b973745274 39188ea5e46f2aaa9d93558ca5069897 { 'aliquot_tag': 'ALQ_7f14ae9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01285.RNA-Seq.R2_L002.T C3L-01285 LSCC RNA-Seq tumor CPT0087190006 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 3925972669 FASTQ R2_L002 unaligned CPTAC3 6b06b248-5a0e-4709-af77-0bfebc899a0a 7223fea0208e26b4f1e9b57215238f2b { 'aliquot_tag': 'ALQ_21aa6e17', 'gdc_sample_type': 'Primary Tumor' } -C3L-01285.RNA-Seq.R2_L003.A C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 3332813643 FASTQ R2_L003 unaligned CPTAC3 e3e636bb-f22b-4dca-8c05-1190386bd6d7 8b8db290f814c7e7c33961e9e14d8af9 { 'aliquot_tag': 'ALQ_7f14ae9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01285.RNA-Seq.genomic.A.hg38 C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 0077102a-1ae7-45c1-b9e9-bdde042b6c69.rna_seq.genomic.gdc_realn.bam 6565682993 BAM genomic harmonized CPTAC3 7b9c4a5c-337f-49dd-917c-d306bf11a7e9 a8ee808331beb93d15126f90769fc476 { 'aliquot_tag': 'ALQ_7f14ae9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01285.RNA-Seq.genomic.T.hg38 C3L-01285 LSCC RNA-Seq tumor CPT0087190006 47b0ec16-d440-4400-991f-81793639324f.rna_seq.genomic.gdc_realn.bam 7522829351 BAM genomic harmonized CPTAC3 1fe1f83f-9784-4356-90b2-c795609b32f5 e02c6601d2460dee118a6ad0b35cf420 { 'aliquot_tag': 'ALQ_21aa6e17', 'gdc_sample_type': 'Primary Tumor' } +C3L-01285.RNA-Seq.R1_L002.T C3L-01285 LSCC RNA-Seq tumor CPT0087190006 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 3722565553 FASTQ R1_L002 unaligned CPTAC3 6d178311-7b59-4974-b5e1-96e7944378e3 3d72470d99eac46e53d57200c6818315 { 'aliquot_tag': 'ALQ_21aa6e17', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01285.RNA-Seq.R1_L003.A C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 3037892491 FASTQ R1_L003 unaligned CPTAC3 3580e292-7009-461f-87fe-52b973745274 39188ea5e46f2aaa9d93558ca5069897 { 'aliquot_tag': 'ALQ_7f14ae9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-01285.RNA-Seq.R2_L002.T C3L-01285 LSCC RNA-Seq tumor CPT0087190006 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 3925972669 FASTQ R2_L002 unaligned CPTAC3 6b06b248-5a0e-4709-af77-0bfebc899a0a 7223fea0208e26b4f1e9b57215238f2b { 'aliquot_tag': 'ALQ_21aa6e17', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01285.RNA-Seq.R2_L003.A C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 3332813643 FASTQ R2_L003 unaligned CPTAC3 e3e636bb-f22b-4dca-8c05-1190386bd6d7 8b8db290f814c7e7c33961e9e14d8af9 { 'aliquot_tag': 'ALQ_7f14ae9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3L-01285.RNA-Seq.transcriptome.A.hg38 C3L-01285 LSCC RNA-Seq tissue_normal CPT0087210009 0077102a-1ae7-45c1-b9e9-bdde042b6c69.rna_seq.transcriptome.gdc_realn.bam 8235406334 BAM transcriptome harmonized CPTAC3 ab21406d-2a66-42c2-9080-d7428e8bfdbd 04f4db55060e4c79f72cda6638e249e0 { 'aliquot_tag': 'ALQ_7f14ae9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01285.RNA-Seq.transcriptome.T.hg38 C3L-01285 LSCC RNA-Seq tumor CPT0087190006 47b0ec16-d440-4400-991f-81793639324f.rna_seq.transcriptome.gdc_realn.bam 9630903231 BAM transcriptome harmonized CPTAC3 dc6debc2-7f99-4575-9836-99cf2dfb3b91 1272799b75cb2efb89437151b12f465f { 'aliquot_tag': 'ALQ_21aa6e17', 'gdc_sample_type': 'Primary Tumor' } C3L-01285.WGS.A C3L-01285 LSCC WGS tissue_normal CPT0087210006 CPT0087210006.WholeGenome.RP-1303.bam 60404295878 BAM aligned CPTAC3 9975e347-f468-4c4f-918f-e9e573902eec 061dd03e80c738ebca9c689f3f158454 { 'aliquot_tag': 'ALQ_974e5778', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -6490,16 +7088,16 @@ C3L-01286.DUP_79616d8e.WXS.T.hg38 C3L-01286 CCRCC WXS tumor CPT0086960009 020028 C3L-01286.DUP_931e237f.miRNA-Seq.T C3L-01286 CCRCC miRNA-Seq tumor CPT0086940006 200526_UNC32-K00270_0248_BHH7WFBBXY_GACGAC_S12_L004_R1_001.unaln.bam 183791928 BAM unaligned CPTAC3 12897640-8046-49f3-97d3-2141b7a0fbd7 fd9f3e2bd13a2f8ac92d16063760276c { 'aliquot_tag': 'DUP_931e237f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01286.DUP_931e237f.miRNA-Seq.T.hg38 C3L-01286 CCRCC miRNA-Seq tumor CPT0086940006 9e98a4b6-d3c1-4be6-abf7-8c3b23660024_mirnaseq_gdc_realn.bam 201336741 BAM harmonized CPTAC3 60675bcc-4a1f-491d-8d3c-f1d2255c5a7b 0957034e6a8916e3af766467e4576ab4 { 'aliquot_tag': 'DUP_931e237f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01286.DUP_931e237f.RNA-Seq.chimeric.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 ba1f715b-99d9-43f5-95b7-4ae12ae143c7.rna_seq.chimeric.gdc_realn.bam 208678659 BAM chimeric harmonized CPTAC3 ba6acc72-6c4b-4072-b477-e6bfe3618510 fdf5500d82a28f548b053e9c78f992dc { 'aliquot_tag': 'DUP_931e237f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01286.DUP_931e237f.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 ba1f715b-99d9-43f5-95b7-4ae12ae143c7.rna_seq.genomic.gdc_realn.bam 8016068559 BAM genomic harmonized CPTAC3 a7c6d302-3eae-4052-acb8-784025a4161c a552d649a301be7545d74e85b34111df { 'aliquot_tag': 'DUP_931e237f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01286.DUP_931e237f.RNA-Seq.R1_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATGGAT-CTGTATTA_S22_L006_R1_001.fastq.gz 3975358314 FASTQ R1_L006 unaligned CPTAC3 8cde48de-4e58-439a-8be7-9df3c665e913 b95083e19f5390ae9fe0128b3e29c77f { 'aliquot_tag': 'DUP_931e237f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01286.DUP_931e237f.RNA-Seq.R2_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATGGAT-CTGTATTA_S22_L006_R2_001.fastq.gz 4553952342 FASTQ R2_L006 unaligned CPTAC3 05abf494-6e36-49bc-82b0-c00d8d43bba4 b3ba7a79233838cb1a0bf5fc1da64ac3 { 'aliquot_tag': 'DUP_931e237f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01286.DUP_931e237f.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 ba1f715b-99d9-43f5-95b7-4ae12ae143c7.rna_seq.genomic.gdc_realn.bam 8016068559 BAM genomic harmonized CPTAC3 62455dc5-e7f4-47f9-a13d-be311c9ed9d2 a552d649a301be7545d74e85b34111df { 'aliquot_tag': 'DUP_931e237f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01286.DUP_931e237f.RNA-Seq.R1_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATGGAT-CTGTATTA_S22_L006_R1_001.fastq.gz 3975358314 FASTQ R1_L006 unaligned CPTAC3 8cde48de-4e58-439a-8be7-9df3c665e913 b95083e19f5390ae9fe0128b3e29c77f { 'aliquot_tag': 'DUP_931e237f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3L-01286.DUP_931e237f.RNA-Seq.R2_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATGGAT-CTGTATTA_S22_L006_R2_001.fastq.gz 4553952342 FASTQ R2_L006 unaligned CPTAC3 05abf494-6e36-49bc-82b0-c00d8d43bba4 b3ba7a79233838cb1a0bf5fc1da64ac3 { 'aliquot_tag': 'DUP_931e237f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3L-01286.DUP_931e237f.RNA-Seq.transcriptome.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086940006 ba1f715b-99d9-43f5-95b7-4ae12ae143c7.rna_seq.transcriptome.gdc_realn.bam 11555576846 BAM transcriptome harmonized CPTAC3 ea2f47a0-9eb0-4791-b3ee-a3ee6fc32348 6e1b1b97f8be4d4567db346f827dc200 { 'aliquot_tag': 'DUP_931e237f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01286.DUP_e9de701f.miRNA-Seq.T C3L-01286 CCRCC miRNA-Seq tumor CPT0086960006 200526_UNC32-K00270_0248_BHH7WFBBXY_TAATCG_S15_L004_R1_001.unaln.bam 251964153 BAM unaligned CPTAC3 9daa5cb1-886d-4531-9bf3-054ca6131646 3408905f3ec4a4de772b9b475f875255 { 'aliquot_tag': 'DUP_e9de701f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01286.DUP_e9de701f.miRNA-Seq.T.hg38 C3L-01286 CCRCC miRNA-Seq tumor CPT0086960006 9cb77589-64a9-4033-93a3-d92790f43def_mirnaseq_gdc_realn.bam 274032277 BAM harmonized CPTAC3 5479f99a-a7d4-453b-8367-77eb676a68fc 92549aa7e606c4e4132baec8dd889923 { 'aliquot_tag': 'DUP_e9de701f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01286.DUP_e9de701f.RNA-Seq.chimeric.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 0bf95a27-4d07-4500-961a-5dd27ab98434.rna_seq.chimeric.gdc_realn.bam 271581567 BAM chimeric harmonized CPTAC3 a9e60890-0667-4938-8ce2-dae95fc45b0d 95aa104702793b10519ba7957574634a { 'aliquot_tag': 'DUP_e9de701f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01286.DUP_e9de701f.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 0bf95a27-4d07-4500-961a-5dd27ab98434.rna_seq.genomic.gdc_realn.bam 7740888311 BAM genomic harmonized CPTAC3 1724bb46-bbc3-42a1-acd0-d0c2f93bfd47 609a78b1aff6e24a2f1e6a0aca71ada6 { 'aliquot_tag': 'DUP_e9de701f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01286.DUP_e9de701f.RNA-Seq.R1_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCAAGC-TCACGCCG_S23_L006_R1_001.fastq.gz 3713606868 FASTQ R1_L006 unaligned CPTAC3 13262c45-16ad-4c4d-8b2f-332613c9e5af bb7c9748587fc60489576a46895273a0 { 'aliquot_tag': 'DUP_e9de701f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01286.DUP_e9de701f.RNA-Seq.R2_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCAAGC-TCACGCCG_S23_L006_R2_001.fastq.gz 4364596156 FASTQ R2_L006 unaligned CPTAC3 d81807be-d2cb-4a97-83f0-6999d9282f5a 660cd4e0691f9d182fcac6a84897b527 { 'aliquot_tag': 'DUP_e9de701f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01286.DUP_e9de701f.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 0bf95a27-4d07-4500-961a-5dd27ab98434.rna_seq.genomic.gdc_realn.bam 7740888311 BAM genomic harmonized CPTAC3 962d235e-7805-4702-b4e2-f1da8cf96cee 609a78b1aff6e24a2f1e6a0aca71ada6 { 'aliquot_tag': 'DUP_e9de701f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01286.DUP_e9de701f.RNA-Seq.R1_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCAAGC-TCACGCCG_S23_L006_R1_001.fastq.gz 3713606868 FASTQ R1_L006 unaligned CPTAC3 13262c45-16ad-4c4d-8b2f-332613c9e5af bb7c9748587fc60489576a46895273a0 { 'aliquot_tag': 'DUP_e9de701f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3L-01286.DUP_e9de701f.RNA-Seq.R2_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCAAGC-TCACGCCG_S23_L006_R2_001.fastq.gz 4364596156 FASTQ R2_L006 unaligned CPTAC3 d81807be-d2cb-4a97-83f0-6999d9282f5a 660cd4e0691f9d182fcac6a84897b527 { 'aliquot_tag': 'DUP_e9de701f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3L-01286.DUP_e9de701f.RNA-Seq.transcriptome.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086960006 0bf95a27-4d07-4500-961a-5dd27ab98434.rna_seq.transcriptome.gdc_realn.bam 10500467641 BAM transcriptome harmonized CPTAC3 80c1e594-f077-41bd-a787-bc96f4f453cf b8ab4166b7e918205ee5b5cce0239e71 { 'aliquot_tag': 'DUP_e9de701f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01286.MethArray.Green.A C3L-01286 CCRCC Methylation Array tissue_normal CPT0086970009 203027390029_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 df2ff300-0973-4f0d-a656-9e7b855d5186 64f4d08a6330af43260e99f87aa4a2fc { 'aliquot_tag': 'ALQ_4401443e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01286.MethArray.Green.T C3L-01286 CCRCC Methylation Array tumor CPT0086950009 202176300001_R08C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0a817c99-ca6f-4012-9afa-f115ff0859e4 71f5e7158c7d9c2d63769e54a60cba16 { 'aliquot_tag': 'ALQ_3ec1175e', 'gdc_sample_type': 'Primary Tumor' } @@ -6511,12 +7109,12 @@ C3L-01286.miRNA-Seq.T C3L-01286 CCRCC miRNA-Seq tumor CPT0086950006 181113_UNC31 C3L-01286.miRNA-Seq.T.hg38 C3L-01286 CCRCC miRNA-Seq tumor CPT0086950006 57a78a5e-e720-45b9-a768-56f624f814b8_mirnaseq_gdc_realn.bam 252515829 BAM harmonized CPTAC3 d605c5e3-1362-4a41-89f6-8a132fb81df0 872decc857fa8982a12307da225c3d01 { 'aliquot_tag': 'ALQ_ae7e0acf', 'gdc_sample_type': 'Primary Tumor' } C3L-01286.RNA-Seq.chimeric.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 2d165f61-9941-4c84-a6d6-ad27d1a9ddba.rna_seq.chimeric.gdc_realn.bam 107978724 BAM chimeric harmonized CPTAC3 9a6d581b-4809-4a1a-aa47-0f265b8cce26 cdd6c0113dd21f51b298cef0fa531da3 { 'aliquot_tag': 'ALQ_d4be59af', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01286.RNA-Seq.chimeric.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 04adac60-d23f-4813-b722-009e4c21487e.rna_seq.chimeric.gdc_realn.bam 35282551 BAM chimeric harmonized CPTAC3 f64aef9a-e33f-4536-bae9-c5e164228100 3b30b81fb3059b15f4a3846ecc3eee64 { 'aliquot_tag': 'ALQ_ae7e0acf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01286.RNA-Seq.genomic.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 2d165f61-9941-4c84-a6d6-ad27d1a9ddba.rna_seq.genomic.gdc_realn.bam 8751369807 BAM genomic harmonized CPTAC3 214252ef-b165-4805-b3b7-8a3c5a19a3e1 cdf74474a0ff1614dfe37ca82774f550 { 'aliquot_tag': 'ALQ_d4be59af', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01286.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 04adac60-d23f-4813-b722-009e4c21487e.rna_seq.genomic.gdc_realn.bam 7522799887 BAM genomic harmonized CPTAC3 6a83ad81-9d2d-428b-8f80-476f938c21f4 78738c022396f00717123c8218812fea { 'aliquot_tag': 'ALQ_ae7e0acf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01286.RNA-Seq.R1_L002.A C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 171205_UNC32-K00270_0069_BHN2HGBBXX_CCGTCC_S8_L002_R1_001.fastq.gz 4256220377 FASTQ R1_L002 unaligned CPTAC3 7c03923c-a1f3-44cc-a70c-89a22a27f780 d29be8e3b9a01e412920400d1695d87b { 'aliquot_tag': 'ALQ_d4be59af', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01286.RNA-Seq.R1_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L006_R1_001.fastq.gz 3814402880 FASTQ R1_L006 unaligned CPTAC3 0d7011ca-0c48-43ef-8143-4c0b5e342cc8 c4459cd61fbc128c058245f75b23e434 { 'aliquot_tag': 'ALQ_ae7e0acf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01286.RNA-Seq.R2_L002.A C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 171205_UNC32-K00270_0069_BHN2HGBBXX_CCGTCC_S8_L002_R2_001.fastq.gz 4199001179 FASTQ R2_L002 unaligned CPTAC3 387efbbe-ed80-4e0d-a72d-bc8dad68a2e5 7fb35cffe86c84e18681d75baa58122e { 'aliquot_tag': 'ALQ_d4be59af', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01286.RNA-Seq.R2_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L006_R2_001.fastq.gz 4005785828 FASTQ R2_L006 unaligned CPTAC3 c07931d4-4634-4705-8c0f-f7c78ce8b017 cc8008b6ab1670339bb95d90e6cec480 { 'aliquot_tag': 'ALQ_ae7e0acf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01286.RNA-Seq.genomic.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 2d165f61-9941-4c84-a6d6-ad27d1a9ddba.rna_seq.genomic.gdc_realn.bam 8751369807 BAM genomic harmonized CPTAC3 76b4a2ac-6047-4cb9-8ad5-11f99d50316e cdf74474a0ff1614dfe37ca82774f550 { 'aliquot_tag': 'ALQ_d4be59af', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01286.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 04adac60-d23f-4813-b722-009e4c21487e.rna_seq.genomic.gdc_realn.bam 7522799887 BAM genomic harmonized CPTAC3 f5d18902-48ae-4f5e-9709-fc17291894ce 78738c022396f00717123c8218812fea { 'aliquot_tag': 'ALQ_ae7e0acf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01286.RNA-Seq.R1_L002.A C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 171205_UNC32-K00270_0069_BHN2HGBBXX_CCGTCC_S8_L002_R1_001.fastq.gz 4256220377 FASTQ R1_L002 unaligned CPTAC3 7c03923c-a1f3-44cc-a70c-89a22a27f780 d29be8e3b9a01e412920400d1695d87b { 'aliquot_tag': 'ALQ_d4be59af', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01286.RNA-Seq.R1_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L006_R1_001.fastq.gz 3814402880 FASTQ R1_L006 unaligned CPTAC3 0d7011ca-0c48-43ef-8143-4c0b5e342cc8 c4459cd61fbc128c058245f75b23e434 { 'aliquot_tag': 'ALQ_ae7e0acf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01286.RNA-Seq.R2_L002.A C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 171205_UNC32-K00270_0069_BHN2HGBBXX_CCGTCC_S8_L002_R2_001.fastq.gz 4199001179 FASTQ R2_L002 unaligned CPTAC3 387efbbe-ed80-4e0d-a72d-bc8dad68a2e5 7fb35cffe86c84e18681d75baa58122e { 'aliquot_tag': 'ALQ_d4be59af', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01286.RNA-Seq.R2_L006.T C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L006_R2_001.fastq.gz 4005785828 FASTQ R2_L006 unaligned CPTAC3 c07931d4-4634-4705-8c0f-f7c78ce8b017 cc8008b6ab1670339bb95d90e6cec480 { 'aliquot_tag': 'ALQ_ae7e0acf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-01286.RNA-Seq.transcriptome.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal CPT0086970006 2d165f61-9941-4c84-a6d6-ad27d1a9ddba.rna_seq.transcriptome.gdc_realn.bam 10000734072 BAM transcriptome harmonized CPTAC3 a7bdd739-52bd-40ef-adf5-3b3f24672ab6 77db7c9866ab21e249191bc88f9cf5e1 { 'aliquot_tag': 'ALQ_d4be59af', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01286.RNA-Seq.transcriptome.T.hg38 C3L-01286 CCRCC RNA-Seq tumor CPT0086950006 04adac60-d23f-4813-b722-009e4c21487e.rna_seq.transcriptome.gdc_realn.bam 11504963563 BAM transcriptome harmonized CPTAC3 80db8ae3-6e95-49e2-8819-f399d9364b79 75692990618d49f62c3fbac21d8ddf06 { 'aliquot_tag': 'ALQ_ae7e0acf', 'gdc_sample_type': 'Primary Tumor' } C3L-01286.WGS.A C3L-01286 CCRCC WGS tissue_normal CPT0086970009 CPT0086970009.WholeGenome.RP-1303.bam 53853615673 BAM aligned CPTAC3 7bfa8592-7045-45f3-8026-4fcb84a90abc 3a52d40c6e8f1cc59ff749087c207783 { 'aliquot_tag': 'ALQ_4401443e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -6534,16 +7132,16 @@ C3L-01286.WXS.T.hg38 C3L-01286 CCRCC WXS tumor CPT0086950009 055ee558-21d4-4aff- C3L-01287.DUP_1f17bad5.miRNA-Seq.T C3L-01287 CCRCC miRNA-Seq tumor CPT0079420009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGTCA_S22_L005_R1_001.unaln.bam 295681447 BAM unaligned CPTAC3 b415b5e9-0f18-40bc-a775-76ff89768368 1ba5b2ae546c368ed9bafe44b5d70844 { 'aliquot_tag': 'DUP_1f17bad5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01287.DUP_1f17bad5.miRNA-Seq.T.hg38 C3L-01287 CCRCC miRNA-Seq tumor CPT0079420009 b4f80031-9316-4c99-a31f-74effdca81ea_mirnaseq_gdc_realn.bam 323901188 BAM harmonized CPTAC3 c000d894-8dce-4352-bea2-16e204ddab90 6f02ab2aad9d509fc27cdc8d24b45b55 { 'aliquot_tag': 'DUP_1f17bad5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01287.DUP_1f17bad5.RNA-Seq.chimeric.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 318459f6-f4b2-4b18-8591-4158b6220d40.rna_seq.chimeric.gdc_realn.bam 234239446 BAM chimeric harmonized CPTAC3 aac9f80d-988a-4555-991c-85ff1a3db48f b75a81d2b06ef121a576afed0511512d { 'aliquot_tag': 'DUP_1f17bad5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01287.DUP_1f17bad5.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 318459f6-f4b2-4b18-8591-4158b6220d40.rna_seq.genomic.gdc_realn.bam 8212188292 BAM genomic harmonized CPTAC3 62e1db54-24a9-49fd-87d3-0bc26d4bb9b7 32607385d8f5dac0b3f29ea6378abe51 { 'aliquot_tag': 'DUP_1f17bad5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01287.DUP_1f17bad5.RNA-Seq.R1_L007.T C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 200518_UNC32-K00270_0247_AHH573BBXY_GGCTTAAG-TCGTGACC_S41_L007_R1_001.fastq.gz 3848758785 FASTQ R1_L007 unaligned CPTAC3 61a7995b-61cc-4d4c-a894-3cf34cf6428d d95e5224758e8daf721d3024190e3f9a { 'aliquot_tag': 'DUP_1f17bad5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01287.DUP_1f17bad5.RNA-Seq.R2_L007.T C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 200518_UNC32-K00270_0247_AHH573BBXY_GGCTTAAG-TCGTGACC_S41_L007_R2_001.fastq.gz 4414315910 FASTQ R2_L007 unaligned CPTAC3 0fae67c7-b141-487b-a4af-d45b25b6f81d bf0fca031df63f28a05f799f061f43e4 { 'aliquot_tag': 'DUP_1f17bad5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01287.DUP_1f17bad5.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 318459f6-f4b2-4b18-8591-4158b6220d40.rna_seq.genomic.gdc_realn.bam 8212188292 BAM genomic harmonized CPTAC3 1c29e8dc-0079-475f-b549-7a9fa011a9ba 32607385d8f5dac0b3f29ea6378abe51 { 'aliquot_tag': 'DUP_1f17bad5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01287.DUP_1f17bad5.RNA-Seq.R1_L007.T C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 200518_UNC32-K00270_0247_AHH573BBXY_GGCTTAAG-TCGTGACC_S41_L007_R1_001.fastq.gz 3848758785 FASTQ R1_L007 unaligned CPTAC3 61a7995b-61cc-4d4c-a894-3cf34cf6428d d95e5224758e8daf721d3024190e3f9a { 'aliquot_tag': 'DUP_1f17bad5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3L-01287.DUP_1f17bad5.RNA-Seq.R2_L007.T C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 200518_UNC32-K00270_0247_AHH573BBXY_GGCTTAAG-TCGTGACC_S41_L007_R2_001.fastq.gz 4414315910 FASTQ R2_L007 unaligned CPTAC3 0fae67c7-b141-487b-a4af-d45b25b6f81d bf0fca031df63f28a05f799f061f43e4 { 'aliquot_tag': 'DUP_1f17bad5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3L-01287.DUP_1f17bad5.RNA-Seq.transcriptome.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079420009 318459f6-f4b2-4b18-8591-4158b6220d40.rna_seq.transcriptome.gdc_realn.bam 10705082462 BAM transcriptome harmonized CPTAC3 e2354afd-1e54-4a8e-b078-531b6a0274b2 84116fa03c03a098cf08be910f282a99 { 'aliquot_tag': 'DUP_1f17bad5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01287.DUP_65d7e9b5.miRNA-Seq.T C3L-01287 CCRCC miRNA-Seq tumor CPT0079400009 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTTCC_S38_L005_R1_001.unaln.bam 313342157 BAM unaligned CPTAC3 098a5f29-49cd-4a32-ba63-c8488549e5e5 52ec2debd04b53ac113deb148916598a { 'aliquot_tag': 'DUP_65d7e9b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01287.DUP_65d7e9b5.miRNA-Seq.T.hg38 C3L-01287 CCRCC miRNA-Seq tumor CPT0079400009 89e836ab-cb30-435a-9c66-64939e3252d8_mirnaseq_gdc_realn.bam 349946578 BAM harmonized CPTAC3 1dab0cb1-8f81-4aff-919c-c1bb877657de 3bfa447290c82429c14b799c702c0413 { 'aliquot_tag': 'DUP_65d7e9b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01287.DUP_65d7e9b5.RNA-Seq.chimeric.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 c90eb28f-fac3-4c6c-bebf-456d0fe6e248.rna_seq.chimeric.gdc_realn.bam 167757996 BAM chimeric harmonized CPTAC3 cd28fae3-5efb-4259-abb4-2fa80181ccf2 7459f6235410d478edafc9cbc5cf9ec2 { 'aliquot_tag': 'DUP_65d7e9b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01287.DUP_65d7e9b5.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 c90eb28f-fac3-4c6c-bebf-456d0fe6e248.rna_seq.genomic.gdc_realn.bam 7929939281 BAM genomic harmonized CPTAC3 5df70caf-1787-44b6-8e47-c0e4302e1f1d 5537b5629098135a0edbd8bf2ba98fdb { 'aliquot_tag': 'DUP_65d7e9b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01287.DUP_65d7e9b5.RNA-Seq.R1_L007.T C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 200518_UNC32-K00270_0247_AHH573BBXY_TTGGACTC-GGAAGCAG_S42_L007_R1_001.fastq.gz 3684659898 FASTQ R1_L007 unaligned CPTAC3 d65261b4-8bde-4d0e-8575-7eaf615c6e5d 11d1a6c9f3b6bbe9b8bede163cafd22c { 'aliquot_tag': 'DUP_65d7e9b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01287.DUP_65d7e9b5.RNA-Seq.R2_L007.T C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 200518_UNC32-K00270_0247_AHH573BBXY_TTGGACTC-GGAAGCAG_S42_L007_R2_001.fastq.gz 4314615042 FASTQ R2_L007 unaligned CPTAC3 054227df-d99a-4fe5-a411-061ccb226e8c 11c53a4c81289676b26a7344a44b709f { 'aliquot_tag': 'DUP_65d7e9b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01287.DUP_65d7e9b5.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 c90eb28f-fac3-4c6c-bebf-456d0fe6e248.rna_seq.genomic.gdc_realn.bam 7929939281 BAM genomic harmonized CPTAC3 9057c15b-ceca-4d3e-b95e-71bcd30e893a 5537b5629098135a0edbd8bf2ba98fdb { 'aliquot_tag': 'DUP_65d7e9b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01287.DUP_65d7e9b5.RNA-Seq.R1_L007.T C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 200518_UNC32-K00270_0247_AHH573BBXY_TTGGACTC-GGAAGCAG_S42_L007_R1_001.fastq.gz 3684659898 FASTQ R1_L007 unaligned CPTAC3 d65261b4-8bde-4d0e-8575-7eaf615c6e5d 11d1a6c9f3b6bbe9b8bede163cafd22c { 'aliquot_tag': 'DUP_65d7e9b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3L-01287.DUP_65d7e9b5.RNA-Seq.R2_L007.T C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 200518_UNC32-K00270_0247_AHH573BBXY_TTGGACTC-GGAAGCAG_S42_L007_R2_001.fastq.gz 4314615042 FASTQ R2_L007 unaligned CPTAC3 054227df-d99a-4fe5-a411-061ccb226e8c 11c53a4c81289676b26a7344a44b709f { 'aliquot_tag': 'DUP_65d7e9b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3L-01287.DUP_65d7e9b5.RNA-Seq.transcriptome.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079400009 c90eb28f-fac3-4c6c-bebf-456d0fe6e248.rna_seq.transcriptome.gdc_realn.bam 11048732152 BAM transcriptome harmonized CPTAC3 c116682f-59a7-4e32-b863-3b7f3b4f3431 cca5331d0e4d0db892cb7e67951e741c { 'aliquot_tag': 'DUP_65d7e9b5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01287.DUP_91de521c.MethArray.Green.T C3L-01287 CCRCC Methylation Array tumor CPT0079420012 204367470127_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 3d25a9c8-5e6a-442f-92e0-1df43e0f6f01 f9983238c92621bba2ebc5be0320e141 { 'aliquot_tag': 'DUP_91de521c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01287.DUP_91de521c.MethArray.Red.T C3L-01287 CCRCC Methylation Array tumor CPT0079420012 204367470127_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 2f8ecc89-5f68-4dc8-aa7f-18098edd5edc cb0802801194fe570ba9fd95f3625815 { 'aliquot_tag': 'DUP_91de521c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -6565,18 +7163,18 @@ C3L-01287.miRNA-Seq.T C3L-01287 CCRCC miRNA-Seq tumor CPT0079410006 181012_UNC32 C3L-01287.miRNA-Seq.T.hg38 C3L-01287 CCRCC miRNA-Seq tumor CPT0079410006 3197d373-5a6f-4e45-bc8e-2f5a6c7186e8_mirnaseq_gdc_realn.bam 183581269 BAM harmonized CPTAC3 78cd47d3-01cf-40a0-846d-eb6712102401 72db28b2372e357e95b2685f51ce651d { 'aliquot_tag': 'ALQ_c808dd94', 'gdc_sample_type': 'Primary Tumor' } C3L-01287.RNA-Seq.chimeric.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 b053d9e7-3f2d-43b8-9f56-72d7ecfe0982.rna_seq.chimeric.gdc_realn.bam 86909169 BAM chimeric harmonized CPTAC3 1d5c7868-82bc-416a-8cd3-89142eae09bf b40cdb788fd12260713c718db7de7be1 { 'aliquot_tag': 'ALQ_b2c88ef4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01287.RNA-Seq.chimeric.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 94fdb121-b644-41c0-9552-3473e3e4fe9b.rna_seq.chimeric.gdc_realn.bam 151200069 BAM chimeric harmonized CPTAC3 eda17d6d-f9a0-4bb9-b779-a9888210400a b1760ba9aede3628a332e75d48c0e062 { 'aliquot_tag': 'ALQ_c808dd94', 'gdc_sample_type': 'Primary Tumor' } -C3L-01287.RNA-Seq.genomic.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 b053d9e7-3f2d-43b8-9f56-72d7ecfe0982.rna_seq.genomic.gdc_realn.bam 8770191947 BAM genomic harmonized CPTAC3 f94e2a06-0d8d-4b4a-98c7-17be42d33aa9 5dcdf5751b30d08701a4b44e369e0e59 { 'aliquot_tag': 'ALQ_b2c88ef4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01287.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 94fdb121-b644-41c0-9552-3473e3e4fe9b.rna_seq.genomic.gdc_realn.bam 7474290808 BAM genomic harmonized CPTAC3 4b8a83be-09a3-4222-8b31-b7d931a11df2 eb7929923b60290775650c2baf2783e2 { 'aliquot_tag': 'ALQ_c808dd94', 'gdc_sample_type': 'Primary Tumor' } -C3L-01287.RNA-Seq.R1_L004.T C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 170905_UNC31-K00269_0079_AHLCF7BBXX_TGACCA_S16_L004_R1_001.fastq.gz 3997328288 FASTQ R1_L004 unaligned CPTAC3 ffb43c31-d570-4796-8b3a-fcc3cd19c884 b7ffb509ade29296d2cd5e3aa4f5de09 { 'aliquot_tag': 'ALQ_c808dd94', 'gdc_sample_type': 'Primary Tumor' } -C3L-01287.RNA-Seq.R1_L007.A C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L007_R1_001.fastq.gz 4432088711 FASTQ R1_L007 unaligned CPTAC3 35c21dfb-4da7-4c62-961a-5724f2353fa6 93c66831374cb06dcbaad11e9fde49d4 { 'aliquot_tag': 'ALQ_b2c88ef4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01287.RNA-Seq.R2_L004.T C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 170905_UNC31-K00269_0079_AHLCF7BBXX_TGACCA_S16_L004_R2_001.fastq.gz 4217433923 FASTQ R2_L004 unaligned CPTAC3 123a7b3b-32f8-4460-910d-f05757a239a8 8dc222d65c0fe33bbe5890758209cca6 { 'aliquot_tag': 'ALQ_c808dd94', 'gdc_sample_type': 'Primary Tumor' } -C3L-01287.RNA-Seq.R2_L007.A C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L007_R2_001.fastq.gz 4684276351 FASTQ R2_L007 unaligned CPTAC3 e45e4ad2-c8e1-4c06-81e8-647f36e01b5d 64ae7dcfc12825e67f90bbafeb8399f1 { 'aliquot_tag': 'ALQ_b2c88ef4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01287.RNA-Seq.genomic.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 b053d9e7-3f2d-43b8-9f56-72d7ecfe0982.rna_seq.genomic.gdc_realn.bam 8770191947 BAM genomic harmonized CPTAC3 2bcc7552-a0f6-4edf-8b85-be8054074ed8 5dcdf5751b30d08701a4b44e369e0e59 { 'aliquot_tag': 'ALQ_b2c88ef4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01287.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 94fdb121-b644-41c0-9552-3473e3e4fe9b.rna_seq.genomic.gdc_realn.bam 7474290808 BAM genomic harmonized CPTAC3 16bdf1e7-f4e1-42cd-a958-23fb4e5681e4 eb7929923b60290775650c2baf2783e2 { 'aliquot_tag': 'ALQ_c808dd94', 'gdc_sample_type': 'Primary Tumor' } +C3L-01287.RNA-Seq.R1_L004.T C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 170905_UNC31-K00269_0079_AHLCF7BBXX_TGACCA_S16_L004_R1_001.fastq.gz 3997328288 FASTQ R1_L004 unaligned CPTAC3 ffb43c31-d570-4796-8b3a-fcc3cd19c884 b7ffb509ade29296d2cd5e3aa4f5de09 { 'aliquot_tag': 'ALQ_c808dd94', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01287.RNA-Seq.R1_L007.A C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L007_R1_001.fastq.gz 4432088711 FASTQ R1_L007 unaligned CPTAC3 35c21dfb-4da7-4c62-961a-5724f2353fa6 93c66831374cb06dcbaad11e9fde49d4 { 'aliquot_tag': 'ALQ_b2c88ef4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-01287.RNA-Seq.R2_L004.T C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 170905_UNC31-K00269_0079_AHLCF7BBXX_TGACCA_S16_L004_R2_001.fastq.gz 4217433923 FASTQ R2_L004 unaligned CPTAC3 123a7b3b-32f8-4460-910d-f05757a239a8 8dc222d65c0fe33bbe5890758209cca6 { 'aliquot_tag': 'ALQ_c808dd94', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-01287.RNA-Seq.R2_L007.A C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L007_R2_001.fastq.gz 4684276351 FASTQ R2_L007 unaligned CPTAC3 e45e4ad2-c8e1-4c06-81e8-647f36e01b5d 64ae7dcfc12825e67f90bbafeb8399f1 { 'aliquot_tag': 'ALQ_b2c88ef4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-01287.RNA-Seq.transcriptome.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal CPT0079430006 b053d9e7-3f2d-43b8-9f56-72d7ecfe0982.rna_seq.transcriptome.gdc_realn.bam 11724674064 BAM transcriptome harmonized CPTAC3 a7df5e56-90e7-44f1-82db-08b189b19547 801c3f3b70af1d8f23dd3db24601d839 { 'aliquot_tag': 'ALQ_b2c88ef4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01287.RNA-Seq.transcriptome.T.hg38 C3L-01287 CCRCC RNA-Seq tumor CPT0079410006 94fdb121-b644-41c0-9552-3473e3e4fe9b.rna_seq.transcriptome.gdc_realn.bam 11513130066 BAM transcriptome harmonized CPTAC3 3b6662df-abd1-4a97-84b0-4a2d1f3aab4d 14403efadc77dfd5c96a7b4fde712f2c { 'aliquot_tag': 'ALQ_c808dd94', 'gdc_sample_type': 'Primary Tumor' } -C3L-01287.scRNA-Seq.R1_L003.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 20210623_WUSTL_TWFU-CPT0079400003-XBn1_1_TCCGTTGGAT+ACGTTCTCGC_S2_L003_R1_001.fastq.gz 5772404933 FASTQ R1_L003 unaligned CPTAC3 c4ab83b0-c2ae-41b4-b8be-8e869ae4a29b aed9ea0bade87afdf697eb6dfe1f1260 { 'aliquot_tag': 'ALQ_850200ab', 'gdc_sample_type': 'Primary Tumor' } -C3L-01287.scRNA-Seq.R1_L003.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R1_001.fastq.gz 5310421935 FASTQ R1_L003 unaligned CPTAC3 17ae6831-89e0-48ac-9494-c0eef843ee1b 7a22317d94393a81ff10ce36a767b68a { 'aliquot_tag': 'ALQ_ffc253cb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01287.scRNA-Seq.R2_L003.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 20210623_WUSTL_TWFU-CPT0079400003-XBn1_1_TCCGTTGGAT+ACGTTCTCGC_S2_L003_R2_001.fastq.gz 20767153821 FASTQ R2_L003 unaligned CPTAC3 beb30d25-bd64-4eac-a89f-6994cc5c79e2 447d7709baeab287d036a97ad43168c6 { 'aliquot_tag': 'ALQ_850200ab', 'gdc_sample_type': 'Primary Tumor' } -C3L-01287.scRNA-Seq.R2_L003.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R2_001.fastq.gz 5310421935 FASTQ R2_L003 unaligned CPTAC3 c668590d-aa67-4384-bb99-bc7a84f99a5e 7a22317d94393a81ff10ce36a767b68a { 'aliquot_tag': 'ALQ_ffc253cb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01287.scRNA-Seq.R1_L003.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 20210623_WUSTL_TWFU-CPT0079400003-XBn1_1_TCCGTTGGAT+ACGTTCTCGC_S2_L003_R1_001.fastq.gz 5772404933 FASTQ R1_L003 unaligned CPTAC3 c4ab83b0-c2ae-41b4-b8be-8e869ae4a29b aed9ea0bade87afdf697eb6dfe1f1260 { 'aliquot_tag': 'ALQ_850200ab', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01287.scRNA-Seq.R1_L003.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R1_001.fastq.gz 5310421935 FASTQ R1_L003 unaligned CPTAC3 17ae6831-89e0-48ac-9494-c0eef843ee1b 7a22317d94393a81ff10ce36a767b68a { 'aliquot_tag': 'ALQ_ffc253cb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01287.scRNA-Seq.R2_L003.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079400003 20210623_WUSTL_TWFU-CPT0079400003-XBn1_1_TCCGTTGGAT+ACGTTCTCGC_S2_L003_R2_001.fastq.gz 20767153821 FASTQ R2_L003 unaligned CPTAC3 beb30d25-bd64-4eac-a89f-6994cc5c79e2 447d7709baeab287d036a97ad43168c6 { 'aliquot_tag': 'ALQ_850200ab', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01287.scRNA-Seq.R2_L003.T C3L-01287 CCRCC scRNA-Seq tumor CPT0079420003 20210623_WUSTL_TWFU-CPT0079420003-XBn1_1_ACGACTACCA+ACGACCCTAA_S1_L003_R2_001.fastq.gz 5310421935 FASTQ R2_L003 unaligned CPTAC3 c668590d-aa67-4384-bb99-bc7a84f99a5e 7a22317d94393a81ff10ce36a767b68a { 'aliquot_tag': 'ALQ_ffc253cb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-01287.WGS.A C3L-01287 CCRCC WGS tissue_normal CPT0079430009 CPT0079430009.WholeGenome.RP-1303.bam 56547235872 BAM aligned CPTAC3 db50ab6f-f97c-4f2e-8f50-5f2aa394cf58 6a9149181c133576f46c726ac5722b27 { 'aliquot_tag': 'ALQ_22779365', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01287.WGS.A.hg38 C3L-01287 CCRCC WGS tissue_normal CPT0079430009 3d55cf96-5355-4926-a2ad-a0d585794c90_wgs_gdc_realn.bam 82914064751 BAM harmonized CPTAC3 41dac961-197a-4e4e-a974-eb27f7be69a7 bfd9ded39444ac9e2ca459f8c9dd1782 { 'aliquot_tag': 'ALQ_22779365', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01287.WGS.N C3L-01287 CCRCC WGS blood_normal CPT0080130002 CPT0080130002.WholeGenome.RP-1303.bam 67898864269 BAM aligned CPTAC3 936e07f1-b6c0-4bf7-bff2-8deb40ae9cc6 19b4ebf9d9df52e3729a87a84dad1093 { 'aliquot_tag': 'ALQ_a9d08c21', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6594,9 +7192,9 @@ C3L-01288.MethArray.Red.T C3L-01288 CCRCC Methylation Array tumor CPT0079230009 C3L-01288.miRNA-Seq.T C3L-01288 CCRCC miRNA-Seq tumor CPT0079230006 181012_UNC32-K00270_0124_AH223CBBXY_TTAGGC_S24_L007_R1_001.unaln.bam 149132347 BAM unaligned CPTAC3 9a4d074f-077b-4b6a-b4af-9b2c9948d0b5 9474f28fe8007640b5bfe6f02d5d07a4 { 'aliquot_tag': 'ALQ_64916de9', 'gdc_sample_type': 'Primary Tumor' } C3L-01288.miRNA-Seq.T.hg38 C3L-01288 CCRCC miRNA-Seq tumor CPT0079230006 45d65852-13f3-4d05-99f0-a18e9c9174c7_mirnaseq_gdc_realn.bam 168793325 BAM harmonized CPTAC3 f45471c5-1cf4-4248-b242-8224d5517790 ecdd6e9b09d6bcfed39d7ef3fe5b634d { 'aliquot_tag': 'ALQ_64916de9', 'gdc_sample_type': 'Primary Tumor' } C3L-01288.RNA-Seq.chimeric.T.hg38 C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 a1695547-e5c1-428c-b2f6-b55efac7a23c.rna_seq.chimeric.gdc_realn.bam 52246743 BAM chimeric harmonized CPTAC3 eb10902a-f88a-4fc1-9a18-c3fff7f44050 90fc93d5b9750b1bb731123cbd815384 { 'aliquot_tag': 'ALQ_64916de9', 'gdc_sample_type': 'Primary Tumor' } -C3L-01288.RNA-Seq.genomic.T.hg38 C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 a1695547-e5c1-428c-b2f6-b55efac7a23c.rna_seq.genomic.gdc_realn.bam 11319138521 BAM genomic harmonized CPTAC3 7491c516-9e5d-4bcd-b1c2-83a112515ff0 3b08e91f498a195144bb81c5c27d6f86 { 'aliquot_tag': 'ALQ_64916de9', 'gdc_sample_type': 'Primary Tumor' } -C3L-01288.RNA-Seq.R1_L002.T C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L002_R1_001.fastq.gz 5509930403 FASTQ R1_L002 unaligned CPTAC3 f10b5dcd-3ffd-4d4c-972b-20ba92377a81 e91482cef71c9cc79b546c7c5aedc694 { 'aliquot_tag': 'ALQ_64916de9', 'gdc_sample_type': 'Primary Tumor' } -C3L-01288.RNA-Seq.R2_L002.T C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L002_R2_001.fastq.gz 6071919181 FASTQ R2_L002 unaligned CPTAC3 2209dd0f-5712-41c4-be2f-0ba58ab9e5fa 03f7b2df5e8c42352f5649f1be15c9e9 { 'aliquot_tag': 'ALQ_64916de9', 'gdc_sample_type': 'Primary Tumor' } +C3L-01288.RNA-Seq.genomic.T.hg38 C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 a1695547-e5c1-428c-b2f6-b55efac7a23c.rna_seq.genomic.gdc_realn.bam 11319138521 BAM genomic harmonized CPTAC3 7ad9fbcb-45ab-4151-9671-7ea590408cac 3b08e91f498a195144bb81c5c27d6f86 { 'aliquot_tag': 'ALQ_64916de9', 'gdc_sample_type': 'Primary Tumor' } +C3L-01288.RNA-Seq.R1_L002.T C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L002_R1_001.fastq.gz 5509930403 FASTQ R1_L002 unaligned CPTAC3 f10b5dcd-3ffd-4d4c-972b-20ba92377a81 e91482cef71c9cc79b546c7c5aedc694 { 'aliquot_tag': 'ALQ_64916de9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01288.RNA-Seq.R2_L002.T C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L002_R2_001.fastq.gz 6071919181 FASTQ R2_L002 unaligned CPTAC3 2209dd0f-5712-41c4-be2f-0ba58ab9e5fa 03f7b2df5e8c42352f5649f1be15c9e9 { 'aliquot_tag': 'ALQ_64916de9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-01288.RNA-Seq.transcriptome.T.hg38 C3L-01288 CCRCC RNA-Seq tumor CPT0079230006 a1695547-e5c1-428c-b2f6-b55efac7a23c.rna_seq.transcriptome.gdc_realn.bam 13006831595 BAM transcriptome harmonized CPTAC3 1bdc5f95-392b-45c8-9187-df01d6d04291 ae626de958844d044d88859650794360 { 'aliquot_tag': 'ALQ_64916de9', 'gdc_sample_type': 'Primary Tumor' } C3L-01288.WGS.N C3L-01288 CCRCC WGS blood_normal CPT0080100002 CPT0080100002.WholeGenome.RP-1303.bam 67692111209 BAM aligned CPTAC3 ef3d1579-93d0-4454-898e-e1e5f5be3404 da302559aa00b38746492c059389d197 { 'aliquot_tag': 'ALQ_ee70f6f1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01288.WGS.N.hg38 C3L-01288 CCRCC WGS blood_normal CPT0080100002 1e21fdd2-dd02-487f-abdb-65cb903a98a8_gdc_realn.bam 100846997469 BAM harmonized CPTAC3 96d483cc-1a1f-458b-a88f-6e118f623f95 266fdeab6895e3382c42835c9d92a1ab { 'aliquot_tag': 'ALQ_ee70f6f1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6610,11 +7208,11 @@ C3L-01291.MethArray.Green.Tbm C3L-01291 AML Methylation Array tumor_bone_marrow C3L-01291.MethArray.Red.Tbm C3L-01291 AML Methylation Array tumor_bone_marrow CPT0099810002 202234370079_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 16db58d2-c935-464b-9a9e-a45ebd7fc70a b19ec7798c66b91ec31fc4e97107d61c { 'aliquot_tag': 'ALQ_ad2dcbc4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01291.miRNA-Seq.Tbm C3L-01291 AML miRNA-Seq tumor_bone_marrow CPT0099790002 180828_UNC32-K00270_0112_AHWTLNBBXX_CAAAAG_S34_L007_R1_001.unaln.bam 164805317 BAM unaligned CPTAC3 4941b821-201b-49fb-a6fc-84edac279fea ebf5d6066ebf62dbb887a9bb071db61d { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01291.miRNA-Seq.Tbm.hg38 C3L-01291 AML miRNA-Seq tumor_bone_marrow CPT0099790002 27bfb728-b328-4fd1-bb28-074920b66f5b_mirnaseq_gdc_realn.bam 179499135 BAM harmonized CPTAC3 56a109fa-774d-46c1-8100-7b6d982b416d 84d1f9216bbedcebb6c50d4ed2ea4b1f { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01291.RNA-Seq.chimeric.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 49eb77be-d3db-480d-bf6c-8e441b885442.rna_seq.chimeric.gdc_realn.bam 30342693 BAM chimeric harmonized CPTAC3 9d27697e-66ad-4025-875d-c1772851cc38 cba9486eb0c07a4d01232b600605bc82 { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01291.RNA-Seq.genomic.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 49eb77be-d3db-480d-bf6c-8e441b885442.rna_seq.genomic.gdc_realn.bam 10736504227 BAM genomic harmonized CPTAC3 a5a89267-3fd2-4ebf-bd4b-0cc6310ae86e e93af9a8a71ed284016179dee0192831 { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01291.RNA-Seq.R1_L004.Tbm C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 171129_UNC32-K00270_0067_BHN2N5BBXX_TGACCA_S15_L004_R1_001.fastq.gz 4011534935 FASTQ R1_L004 unaligned CPTAC3 8b726895-9862-4f65-a913-2df01d1a57e0 78164f4784045199a0184fe99545ca24 { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01291.RNA-Seq.R2_L004.Tbm C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 171129_UNC32-K00270_0067_BHN2N5BBXX_TGACCA_S15_L004_R2_001.fastq.gz 4152938671 FASTQ R2_L004 unaligned CPTAC3 64d7172a-a162-4a19-99a4-9eadddc740ed d9d9ccd15045658b0f3017d958aa1cef { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01291.RNA-Seq.transcriptome.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 49eb77be-d3db-480d-bf6c-8e441b885442.rna_seq.transcriptome.gdc_realn.bam 7545363168 BAM transcriptome harmonized CPTAC3 76724cca-9fc7-4ef4-8856-738c3020f712 ad2e19c4dd86e67d85fdb7eeecdeab57 { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01291.RNA-Seq.chimeric.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 092871a1-45cc-4326-95c8-7098bb3b6259.rna_seq.chimeric.gdc_realn.bam 30330179 BAM chimeric harmonized CPTAC3 8ed5822a-0479-4bce-a9ea-447b77e0e912 4441efb70ab70c0c0cffb83b0c465b11 { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01291.RNA-Seq.genomic.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 092871a1-45cc-4326-95c8-7098bb3b6259.rna_seq.genomic.gdc_realn.bam 10736691195 BAM genomic harmonized CPTAC3 21ac8878-d58e-42e8-b79a-1e96c125d3ef e074cc07c30a81edcdc9dd47ee771c69 { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01291.RNA-Seq.R1_L004.Tbm C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 171129_UNC32-K00270_0067_BHN2N5BBXX_TGACCA_S15_L004_R1_001.fastq.gz 4011534935 FASTQ R1_L004 unaligned CPTAC3 8b726895-9862-4f65-a913-2df01d1a57e0 78164f4784045199a0184fe99545ca24 { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-01291.RNA-Seq.R2_L004.Tbm C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 171129_UNC32-K00270_0067_BHN2N5BBXX_TGACCA_S15_L004_R2_001.fastq.gz 4152938671 FASTQ R2_L004 unaligned CPTAC3 64d7172a-a162-4a19-99a4-9eadddc740ed d9d9ccd15045658b0f3017d958aa1cef { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-01291.RNA-Seq.transcriptome.Tbm.hg38 C3L-01291 AML RNA-Seq tumor_bone_marrow CPT0099790002 092871a1-45cc-4326-95c8-7098bb3b6259.rna_seq.transcriptome.gdc_realn.bam 8531366846 BAM transcriptome harmonized CPTAC3 a2f98dc9-4b60-49be-b841-53481b62f315 4d29376a661b9a40352489e1c7838db2 { 'aliquot_tag': 'ALQ_6c0b32d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01291.WGS.Nbc C3L-01291 AML WGS buccal_normal CPT0099850002 CPT0099850002.WholeGenome.RP-1303.bam 58351280119 BAM aligned CPTAC3 5a6b11d5-bf6f-4299-a58c-46f34444fe54 6ecf883ac6a248ea7af52306c464a262 { 'aliquot_tag': 'ALQ_58ad6d04', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01291.WGS.Nbc.hg38 C3L-01291 AML WGS buccal_normal CPT0099850002 b6a573c2-ac71-49ff-b6d8-37af02a19190_wgs_gdc_realn.bam 87081454542 BAM harmonized CPTAC3 64af057d-dddd-4424-910c-d04e4aa2254e acf20e5a59d8449a15191509c280f48e { 'aliquot_tag': 'ALQ_58ad6d04', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01291.WGS.Tbm C3L-01291 AML WGS tumor_bone_marrow CPT0099810002 CPT0099810002.WholeGenome.RP-1303.bam 61415592115 BAM aligned CPTAC3 da4a7ade-b8f0-4dbe-acfd-fb4705b4ff9e a46407a89046b399f9337cd03e41257a { 'aliquot_tag': 'ALQ_ad2dcbc4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -6627,13 +7225,14 @@ C3L-01295.MethArray.Green.Tbm C3L-01295 AML Methylation Array tumor_bone_marrow C3L-01295.MethArray.Red.Tbm C3L-01295 AML Methylation Array tumor_bone_marrow CPT0099560002 203561450041_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 60b3c41f-ba1e-4e6c-8dd5-fe906a72e9c7 09db68e9359f19cba46cbc7fb2f4f84f { 'aliquot_tag': 'ALQ_a393040a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01295.miRNA-Seq.Tbm C3L-01295 AML miRNA-Seq tumor_bone_marrow CPT0099620002 190508_UNC31-K00269_0215_BH7FYKBBXY_GTCCGC_S18_L001_R1_001.unaln.bam 223961762 BAM unaligned CPTAC3 6845511c-51d2-4798-8d85-605c81779be5 ad70d18887f8aae6fe9270a121c37119 { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01295.miRNA-Seq.Tbm.hg38 C3L-01295 AML miRNA-Seq tumor_bone_marrow CPT0099620002 31740841-2cf4-4c63-b232-5c92beac050e_mirnaseq_gdc_realn.bam 246973616 BAM harmonized CPTAC3 ba2e9140-1a3d-4d91-b2fa-36e18f3eed6c e0830ba2aef5c5bd1e347f6e36a4a542 { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01295.RNA-Seq.chimeric.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 d8100b17-db93-42b4-a04e-db6c82704ed5.rna_seq.chimeric.gdc_realn.bam 25452691 BAM chimeric harmonized CPTAC3 e49fbea9-a2c8-40dd-b887-2db76c6b0161 f9f8ed3c5f5da5f308a45c60196b2367 { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01295.RNA-Seq.genomic.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 d8100b17-db93-42b4-a04e-db6c82704ed5.rna_seq.genomic.gdc_realn.bam 7237579610 BAM genomic harmonized CPTAC3 a1b3e623-2432-4641-ad56-ac2c2f6481c7 3507727eb49980b416473038747a0529 { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01295.RNA-Seq.R1_L006.Tbm C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 190522_UNC31-K00269_0217_AH7F5MBBXY_CGGCGTGA-GCGCCTGT_S37_L006_R1_001.fastq.gz 3345270077 FASTQ R1_L006 unaligned CPTAC3 316b0d56-7a4e-4eea-967f-5f9121bcc64e a6050176a86af92bedf2fe46c11d0d40 { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01295.RNA-Seq.R2_L006.Tbm C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 190522_UNC31-K00269_0217_AH7F5MBBXY_CGGCGTGA-GCGCCTGT_S37_L006_R2_001.fastq.gz 3949844136 FASTQ R2_L006 unaligned CPTAC3 afdc6d9d-0099-4f29-8952-6be3a1bc0bbb 66c3990a6d1c039d6ab528a117241f8f { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01295.RNA-Seq.transcriptome.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 d8100b17-db93-42b4-a04e-db6c82704ed5.rna_seq.transcriptome.gdc_realn.bam 8594162682 BAM transcriptome harmonized CPTAC3 246982bc-a2b8-4b5b-88e9-0d11a483442c 3da3429fd119206f9185326cd7f6b4a9 { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01295.RNA-Seq.chimeric.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 fdb08da6-023e-4144-9d13-ffa5c767b982.rna_seq.chimeric.gdc_realn.bam 25448865 BAM chimeric harmonized CPTAC3 43cd3f1c-b5c1-4f37-bed3-d2347025c2e0 97384711a56566e36bff1ce63467edd9 { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01295.RNA-Seq.genomic.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 fdb08da6-023e-4144-9d13-ffa5c767b982.rna_seq.genomic.gdc_realn.bam 7236075199 BAM genomic harmonized CPTAC3 e2b99947-4d6f-4531-b351-8b943dc2a576 e8bf92b70978e9656152db713b68816f { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01295.RNA-Seq.R1_L006.Tbm C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 190522_UNC31-K00269_0217_AH7F5MBBXY_CGGCGTGA-GCGCCTGT_S37_L006_R1_001.fastq.gz 3345270077 FASTQ R1_L006 unaligned CPTAC3 316b0d56-7a4e-4eea-967f-5f9121bcc64e a6050176a86af92bedf2fe46c11d0d40 { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-01295.RNA-Seq.R2_L006.Tbm C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 190522_UNC31-K00269_0217_AH7F5MBBXY_CGGCGTGA-GCGCCTGT_S37_L006_R2_001.fastq.gz 3949844136 FASTQ R2_L006 unaligned CPTAC3 afdc6d9d-0099-4f29-8952-6be3a1bc0bbb 66c3990a6d1c039d6ab528a117241f8f { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-01295.RNA-Seq.transcriptome.Tbm.hg38 C3L-01295 AML RNA-Seq tumor_bone_marrow CPT0099620002 fdb08da6-023e-4144-9d13-ffa5c767b982.rna_seq.transcriptome.gdc_realn.bam 9797479170 BAM transcriptome harmonized CPTAC3 4cbf7064-6ceb-4594-8882-1ed2616518fc 84d7a548c5537492b6a65a03c7f42be0 { 'aliquot_tag': 'ALQ_d087d064', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01295.WGS.Nbc C3L-01295 AML WGS buccal_normal CPT0099640002 CPT0099640002.WholeGenome.RP-1303.bam 76761225904 BAM aligned CPTAC3 3bddb539-0a22-4d55-9a18-6c66904ab784 1cb0305de7784767c8970f1590c261fe { 'aliquot_tag': 'ALQ_5fc725c4', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01295.WGS.Nbc.hg38 C3L-01295 AML WGS buccal_normal CPT0099640002 d594d3a4-c362-45a5-9283-92b99a78469d_wgs_gdc_realn.bam 109628472544 BAM harmonized CPTAC3 c224d7f9-818d-4419-bfcc-ba20830a688d 7f4d5e8387cdcf37d720b9d7697d8a60 { 'aliquot_tag': 'ALQ_5fc725c4', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01295.WGS.Tbm C3L-01295 AML WGS tumor_bone_marrow CPT0099560002_1 CPT0099560002_1.WholeGenome.RP-1303.bam 68763622262 BAM aligned CPTAC3 078f15a6-9fab-4bb8-9138-0e57a1759319 31554b889b5d9f6db6d8dc43edf9eb87 { 'aliquot_tag': 'ALQ_d0a6dc5e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01295.WGS.Tbm C3L-01295 AML WGS tumor_bone_marrow CPT0099560002 CPT0099560002.WholeGenome.RP-1303.bam 23922175268 BAM aligned CPTAC3 a049a44a-1bf7-4741-bc21-66ace36d90a6 be7f66ebb2ca2193bc197fcebbe7a969 { 'aliquot_tag': 'ALQ_a393040a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01295.WGS.Tbm.hg38 C3L-01295 AML WGS tumor_bone_marrow CPT0099560002 fc805067-c5dc-4e24-85cc-f584a58b2728_wgs_gdc_realn.bam 34126293284 BAM harmonized CPTAC3 5d51ea11-528e-49dc-8ffd-d1b6f4d15a59 e165039de7a40b065eee395a87321bdb { 'aliquot_tag': 'ALQ_a393040a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01295.WXS.Nbc C3L-01295 AML WXS buccal_normal CPT0099640002 CPT0099640002.WholeExome.RP-1303.bam 22563264860 BAM aligned CPTAC3 2c75c437-a748-4e8d-a82a-900eec51eaf3 b1a2289886dd037e8573b9e3b2d510b2 { 'aliquot_tag': 'ALQ_5fc725c4', 'gdc_sample_type': 'Buccal Cell Normal' } @@ -6644,11 +7243,11 @@ C3L-01296.MethArray.Green.Tbm C3L-01296 AML Methylation Array tumor_bone_marrow C3L-01296.MethArray.Red.Tbm C3L-01296 AML Methylation Array tumor_bone_marrow CPT0099700002 202234360028_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 2ebb1b1c-a115-49e2-a32c-2f408ec94d59 4b7b84a516695178752030d59e6b1745 { 'aliquot_tag': 'ALQ_611b50a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01296.miRNA-Seq.Tbm C3L-01296 AML miRNA-Seq tumor_bone_marrow CPT0099680002 180828_UNC32-K00270_0112_AHWTLNBBXX_ATTCCT_S33_L007_R1_001.unaln.bam 204384371 BAM unaligned CPTAC3 eff0d314-1628-4c18-8ce1-5a906e53f873 c4f55634747facfb312f4a1ff2983a5a { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01296.miRNA-Seq.Tbm.hg38 C3L-01296 AML miRNA-Seq tumor_bone_marrow CPT0099680002 6e25f2a9-6a91-4373-86b5-39d92dd56b92_mirnaseq_gdc_realn.bam 228160966 BAM harmonized CPTAC3 e44a077d-e7dc-4b58-8428-bb1ea794037e 6bebc987d14515be12132c678b49f94a { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01296.RNA-Seq.chimeric.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 3552d408-9f7a-40af-94ef-dd1ec9b42e87.rna_seq.chimeric.gdc_realn.bam 40171863 BAM chimeric harmonized CPTAC3 b5ffadfd-7f0b-4e47-a2bc-a16a6594893d 3feb0acbf9ce023e8e23cc3e255c8f64 { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01296.RNA-Seq.genomic.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 3552d408-9f7a-40af-94ef-dd1ec9b42e87.rna_seq.genomic.gdc_realn.bam 9527966871 BAM genomic harmonized CPTAC3 83751dd8-6827-46b7-8b4c-8c320e97b628 321ef88c7911a6689ea4edc74d8d8f9f { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01296.RNA-Seq.R1_L004.Tbm C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 171129_UNC32-K00270_0067_BHN2N5BBXX_TTAGGC_S12_L004_R1_001.fastq.gz 4352150797 FASTQ R1_L004 unaligned CPTAC3 3dc35af9-cc1a-4e33-9653-245460e0ff17 6f12fb2f8e62b2d2dc1210163ae6cbd8 { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01296.RNA-Seq.R2_L004.Tbm C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 171129_UNC32-K00270_0067_BHN2N5BBXX_TTAGGC_S12_L004_R2_001.fastq.gz 4602841642 FASTQ R2_L004 unaligned CPTAC3 bf7675cf-0611-47f4-a8b5-ac33d7823daf 86b66306b85d3886b53892c6a246129b { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01296.RNA-Seq.transcriptome.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 3552d408-9f7a-40af-94ef-dd1ec9b42e87.rna_seq.transcriptome.gdc_realn.bam 7324795711 BAM transcriptome harmonized CPTAC3 cc906089-7da9-410e-95c2-bf8774295679 ff3ae5ef7df9629363bd5ca2f7cf82c2 { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01296.RNA-Seq.chimeric.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 6d23cc66-0e3d-4734-8786-7bb189ec4ffb.rna_seq.chimeric.gdc_realn.bam 40155333 BAM chimeric harmonized CPTAC3 71816ce7-6d4e-476a-aab8-7fd0776b22dc 9c2a01d1ae24bb10c55c135f0b91b329 { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01296.RNA-Seq.genomic.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 6d23cc66-0e3d-4734-8786-7bb189ec4ffb.rna_seq.genomic.gdc_realn.bam 9528587497 BAM genomic harmonized CPTAC3 bb82b0d7-38cf-4f81-9436-ec1edb2857be ae3dd1f3ac93d1ab677d628b6468c276 { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01296.RNA-Seq.R1_L004.Tbm C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 171129_UNC32-K00270_0067_BHN2N5BBXX_TTAGGC_S12_L004_R1_001.fastq.gz 4352150797 FASTQ R1_L004 unaligned CPTAC3 3dc35af9-cc1a-4e33-9653-245460e0ff17 6f12fb2f8e62b2d2dc1210163ae6cbd8 { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-01296.RNA-Seq.R2_L004.Tbm C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 171129_UNC32-K00270_0067_BHN2N5BBXX_TTAGGC_S12_L004_R2_001.fastq.gz 4602841642 FASTQ R2_L004 unaligned CPTAC3 bf7675cf-0611-47f4-a8b5-ac33d7823daf 86b66306b85d3886b53892c6a246129b { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-01296.RNA-Seq.transcriptome.Tbm.hg38 C3L-01296 AML RNA-Seq tumor_bone_marrow CPT0099680002 6d23cc66-0e3d-4734-8786-7bb189ec4ffb.rna_seq.transcriptome.gdc_realn.bam 8312413627 BAM transcriptome harmonized CPTAC3 d18a211d-5533-4dbc-b651-9b2b1bfc8a99 aa57f377ef2d05e27f797dc4d1598fe0 { 'aliquot_tag': 'ALQ_9a37c8c5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01296.WGS.Nbc C3L-01296 AML WGS buccal_normal CPT0099710002 CPT0099710002.WholeGenome.RP-1303.bam 64723290652 BAM aligned CPTAC3 ec32edcd-460e-45e1-8f04-a73377524120 605fa54479b288add03bb07bf4f87ddc { 'aliquot_tag': 'ALQ_5c7b7911', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01296.WGS.Nbc.hg38 C3L-01296 AML WGS buccal_normal CPT0099710002 31ff8266-efb4-40b9-a2a8-4ada70d0214b_wgs_gdc_realn.bam 101000745877 BAM harmonized CPTAC3 6119f941-dd13-4396-b18f-fcd7301ec242 52c846a6e87ddb67d6e73c34a3ace011 { 'aliquot_tag': 'ALQ_5c7b7911', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01296.WGS.Tbm C3L-01296 AML WGS tumor_bone_marrow CPT0099700002 CPT0099700002.WholeGenome.RP-1303.bam 60635436675 BAM aligned CPTAC3 bac22b68-25d3-42d5-bd60-97133cca97cd f2c15786da68d8879159fb10dc35a028 { 'aliquot_tag': 'ALQ_611b50a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -6667,12 +7266,12 @@ C3L-01302.miRNA-Seq.T C3L-01302 CCRCC miRNA-Seq tumor CPT0063630008 181113_UNC31 C3L-01302.miRNA-Seq.T.hg38 C3L-01302 CCRCC miRNA-Seq tumor CPT0063630008 429a0241-f773-4042-aaac-fc43c77e9446_mirnaseq_gdc_realn.bam 273796446 BAM harmonized CPTAC3 fce57a82-222a-46ed-9bd8-8b28253d54a4 54abbbb03bf050b1acc085e76c91e152 { 'aliquot_tag': 'ALQ_70625d28', 'gdc_sample_type': 'Primary Tumor' } C3L-01302.RNA-Seq.chimeric.A.hg38 C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 d3f91c12-b14f-42b0-bba7-403fa6557ec0.rna_seq.chimeric.gdc_realn.bam 82615566 BAM chimeric harmonized CPTAC3 2fed6653-4f54-4e23-ae92-d8249a05d549 dc781a131b487f2144ad24dd20e3ae1e { 'aliquot_tag': 'ALQ_25faac3f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01302.RNA-Seq.chimeric.T.hg38 C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 f3572d47-d476-41b3-b0dc-9e153260511f.rna_seq.chimeric.gdc_realn.bam 39680750 BAM chimeric harmonized CPTAC3 c2060b0e-83bb-4c85-abfb-60c9a4dae55c 5b3a39686144d4a4ee6364008f1f4027 { 'aliquot_tag': 'ALQ_70625d28', 'gdc_sample_type': 'Primary Tumor' } -C3L-01302.RNA-Seq.genomic.A.hg38 C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 d3f91c12-b14f-42b0-bba7-403fa6557ec0.rna_seq.genomic.gdc_realn.bam 9505579073 BAM genomic harmonized CPTAC3 3507838f-a10b-489d-a89c-9eb97dcc31eb 01001e015783cb902f6a334db05fce6e { 'aliquot_tag': 'ALQ_25faac3f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01302.RNA-Seq.genomic.T.hg38 C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 f3572d47-d476-41b3-b0dc-9e153260511f.rna_seq.genomic.gdc_realn.bam 8999034324 BAM genomic harmonized CPTAC3 8082dff1-f1c3-4005-b126-7b31de04bc9e 82c8165a32aa31bd4b73a74f5ecbcac8 { 'aliquot_tag': 'ALQ_70625d28', 'gdc_sample_type': 'Primary Tumor' } -C3L-01302.RNA-Seq.R1_L005.T C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 170828_UNC31-K00269_0077_AHLF33BBXX_GAGTGG_S18_L005_R1_001.fastq.gz 4463196137 FASTQ R1_L005 unaligned CPTAC3 1557a8aa-c6e9-4a10-8481-ef3e858bacc1 ca3906a4679aab622ef17bb0da32aae9 { 'aliquot_tag': 'ALQ_70625d28', 'gdc_sample_type': 'Primary Tumor' } -C3L-01302.RNA-Seq.R1_L008.A C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTGAT_S23_L008_R1_001.fastq.gz 4760766335 FASTQ R1_L008 unaligned CPTAC3 fdb44060-23a7-4e59-a702-a5283b8bee2d 834a24370ebae93d0a53955b20efd25e { 'aliquot_tag': 'ALQ_25faac3f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01302.RNA-Seq.R2_L005.T C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 170828_UNC31-K00269_0077_AHLF33BBXX_GAGTGG_S18_L005_R2_001.fastq.gz 4786222120 FASTQ R2_L005 unaligned CPTAC3 061c0b4a-2f52-49b7-8d34-fa4960c9bead 660f996c7f83a0024a95cd8ec5b399ab { 'aliquot_tag': 'ALQ_70625d28', 'gdc_sample_type': 'Primary Tumor' } -C3L-01302.RNA-Seq.R2_L008.A C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTGAT_S23_L008_R2_001.fastq.gz 5222034489 FASTQ R2_L008 unaligned CPTAC3 b22a8f99-90ba-40b6-9a43-dad2607758d8 d9958fc21931bcfc6164dcd664f9bcb8 { 'aliquot_tag': 'ALQ_25faac3f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01302.RNA-Seq.genomic.A.hg38 C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 d3f91c12-b14f-42b0-bba7-403fa6557ec0.rna_seq.genomic.gdc_realn.bam 9505579073 BAM genomic harmonized CPTAC3 77648444-c206-4e88-b6ea-674bff67941c 01001e015783cb902f6a334db05fce6e { 'aliquot_tag': 'ALQ_25faac3f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01302.RNA-Seq.genomic.T.hg38 C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 f3572d47-d476-41b3-b0dc-9e153260511f.rna_seq.genomic.gdc_realn.bam 8999034324 BAM genomic harmonized CPTAC3 f7bc271f-d936-4e7c-bdd3-995b0a951957 82c8165a32aa31bd4b73a74f5ecbcac8 { 'aliquot_tag': 'ALQ_70625d28', 'gdc_sample_type': 'Primary Tumor' } +C3L-01302.RNA-Seq.R1_L005.T C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 170828_UNC31-K00269_0077_AHLF33BBXX_GAGTGG_S18_L005_R1_001.fastq.gz 4463196137 FASTQ R1_L005 unaligned CPTAC3 1557a8aa-c6e9-4a10-8481-ef3e858bacc1 ca3906a4679aab622ef17bb0da32aae9 { 'aliquot_tag': 'ALQ_70625d28', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01302.RNA-Seq.R1_L008.A C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTGAT_S23_L008_R1_001.fastq.gz 4760766335 FASTQ R1_L008 unaligned CPTAC3 fdb44060-23a7-4e59-a702-a5283b8bee2d 834a24370ebae93d0a53955b20efd25e { 'aliquot_tag': 'ALQ_25faac3f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-01302.RNA-Seq.R2_L005.T C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 170828_UNC31-K00269_0077_AHLF33BBXX_GAGTGG_S18_L005_R2_001.fastq.gz 4786222120 FASTQ R2_L005 unaligned CPTAC3 061c0b4a-2f52-49b7-8d34-fa4960c9bead 660f996c7f83a0024a95cd8ec5b399ab { 'aliquot_tag': 'ALQ_70625d28', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01302.RNA-Seq.R2_L008.A C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACTGAT_S23_L008_R2_001.fastq.gz 5222034489 FASTQ R2_L008 unaligned CPTAC3 b22a8f99-90ba-40b6-9a43-dad2607758d8 d9958fc21931bcfc6164dcd664f9bcb8 { 'aliquot_tag': 'ALQ_25faac3f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-01302.RNA-Seq.transcriptome.A.hg38 C3L-01302 CCRCC RNA-Seq tissue_normal CPT0063640006 d3f91c12-b14f-42b0-bba7-403fa6557ec0.rna_seq.transcriptome.gdc_realn.bam 12684334705 BAM transcriptome harmonized CPTAC3 61078b84-26b0-4e00-9bc8-615df09c55c2 a45ab195a452f763f567b7f3184901fe { 'aliquot_tag': 'ALQ_25faac3f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01302.RNA-Seq.transcriptome.T.hg38 C3L-01302 CCRCC RNA-Seq tumor CPT0063630008 f3572d47-d476-41b3-b0dc-9e153260511f.rna_seq.transcriptome.gdc_realn.bam 11594598277 BAM transcriptome harmonized CPTAC3 607104a6-3b49-465c-b64e-b726ebac44c7 3878f1e80c1f1f9bbe815aa5748a1315 { 'aliquot_tag': 'ALQ_70625d28', 'gdc_sample_type': 'Primary Tumor' } C3L-01302.WGS.A C3L-01302 CCRCC WGS tissue_normal CPT0063640009 CPT0063640009.WholeGenome.RP-1303.bam 54531714605 BAM aligned CPTAC3 fce2654f-cc83-45fe-bbe4-88b9575e364d cdfd9b532ecf6085bdbb2e13fcad6f1b { 'aliquot_tag': 'ALQ_b545b1ae', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -6695,16 +7294,19 @@ C3L-01304.miRNA-Seq.T C3L-01304 UCEC miRNA-Seq tumor CPT0064210009 181113_UNC31- C3L-01304.miRNA-Seq.T.hg38 C3L-01304 UCEC miRNA-Seq tumor CPT0064210009 fa1301f4-557f-43d5-ad43-cbc52228f68b_mirnaseq_gdc_realn.bam 209807970 BAM harmonized CPTAC3 5d052749-1297-4a7a-a28d-e3b18fb87b8d 05c5737f7ddc990a003deecb5e266e5e { 'aliquot_tag': 'ALQ_23934246', 'gdc_sample_type': 'Primary Tumor' } C3L-01304.RNA-Seq.chimeric.A.hg38 C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 00c8b8e2-4093-49bc-9124-ca075a707571.rna_seq.chimeric.gdc_realn.bam 145502872 BAM chimeric harmonized CPTAC3 b36c9cda-1b7e-4de7-92a2-9173e8ae708d cb09ced6c80f9bafe939fd13846a95c8 { 'aliquot_tag': 'ALQ_7bccd0a7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01304.RNA-Seq.chimeric.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0064210009 48431b07-9e30-47cf-9419-5252f720d63f.rna_seq.chimeric.gdc_realn.bam 30617955 BAM chimeric harmonized CPTAC3 f34b20e4-c978-450b-b3b6-199776dfafd9 366841fb7e13eaa119021c0519eea234 { 'aliquot_tag': 'ALQ_23934246', 'gdc_sample_type': 'Primary Tumor' } +C3L-01304.RNA-Seq.chimeric.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0349840001 bdf7034a-9247-4a9d-8d6e-ffc6151edca9.rna_seq.chimeric.gdc_realn.bam 272050564 BAM chimeric harmonized CPTAC3 4533f48f-e2f4-4050-9487-c09395b09b55 9929050f29c6718c4f9716f22ba86550 { 'aliquot_tag': 'ALQ_5e4c3c1a', 'gdc_sample_type': 'Primary Tumor' } C3L-01304.RNA-Seq.genomic.A.hg38 C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 00c8b8e2-4093-49bc-9124-ca075a707571.rna_seq.genomic.gdc_realn.bam 9176137857 BAM genomic harmonized CPTAC3 bbe94b72-3cbc-4549-b696-917a0afd89af 134e951fce1976b6c1659d5aa00f12cd { 'aliquot_tag': 'ALQ_7bccd0a7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01304.RNA-Seq.genomic.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0064210009 48431b07-9e30-47cf-9419-5252f720d63f.rna_seq.genomic.gdc_realn.bam 8171274027 BAM genomic harmonized CPTAC3 7bf4aa8f-916b-4b5f-af38-184d26a65a51 2ae306d9ac1b245d64755969f2ddfc8a { 'aliquot_tag': 'ALQ_23934246', 'gdc_sample_type': 'Primary Tumor' } -C3L-01304.RNA-Seq.R1_L001.A C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L001_R1_001.fastq.gz 4128559320 FASTQ R1_L001 unaligned CPTAC3 fb12c9f3-e9e4-4234-b1ea-b652ea9e064d 1262f3df654e8927fa130cf296bddb36 { 'aliquot_tag': 'ALQ_7bccd0a7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01304.RNA-Seq.R1_L006.T C3L-01304 UCEC RNA-Seq tumor CPT0064210009 170828_UNC31-K00269_0077_AHLF33BBXX_GTGGCC_S21_L006_R1_001.fastq.gz 3796845587 FASTQ R1_L006 unaligned CPTAC3 2c0d1a81-0278-4dcf-99b1-8b846369e7a2 6f2201edc2b985abf0157fc34fb77f4c { 'aliquot_tag': 'ALQ_23934246', 'gdc_sample_type': 'Primary Tumor' } -C3L-01304.RNA-Seq.R1_.T C3L-01304 UCEC RNA-Seq tumor CPT0349840001 20210723_P2_D2_WB7988-plate2_S38_R1_001.fastq.gz 7713671923 FASTQ R1_ unaligned CPTAC3 c114febc-6ef4-4c4a-8058-afef0e30d834 38eab746c7cc22283e75c50f40c6e1a8 { 'aliquot_tag': 'ALQ_5e4c3c1a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01304.RNA-Seq.R2_L001.A C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L001_R2_001.fastq.gz 4712930558 FASTQ R2_L001 unaligned CPTAC3 9272b657-6b27-4628-adff-898271064f68 549196aad6f244bb99468d4b500d5068 { 'aliquot_tag': 'ALQ_7bccd0a7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01304.RNA-Seq.R2_L006.T C3L-01304 UCEC RNA-Seq tumor CPT0064210009 170828_UNC31-K00269_0077_AHLF33BBXX_GTGGCC_S21_L006_R2_001.fastq.gz 4071894153 FASTQ R2_L006 unaligned CPTAC3 06f5c317-1033-4c7a-b439-095b129762d6 44043ee45cc72e68674581e5dadda24b { 'aliquot_tag': 'ALQ_23934246', 'gdc_sample_type': 'Primary Tumor' } -C3L-01304.RNA-Seq.R2_.T C3L-01304 UCEC RNA-Seq tumor CPT0349840001 20210723_P2_D2_WB7988-plate2_S38_R2_001.fastq.gz 7866103332 FASTQ R2_ unaligned CPTAC3 e40e052c-bd9e-4551-8c7f-f0437c260e39 eb281d5c100ea9d34d4e279d2c196008 { 'aliquot_tag': 'ALQ_5e4c3c1a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01304.RNA-Seq.genomic.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0349840001 bdf7034a-9247-4a9d-8d6e-ffc6151edca9.rna_seq.genomic.gdc_realn.bam 13040293482 BAM genomic harmonized CPTAC3 4dde8489-0320-4f59-bc10-6f43ae92d581 8193132728d370a442a55b3800c09f1b { 'aliquot_tag': 'ALQ_5e4c3c1a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01304.RNA-Seq.R1_L001.A C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L001_R1_001.fastq.gz 4128559320 FASTQ R1_L001 unaligned CPTAC3 fb12c9f3-e9e4-4234-b1ea-b652ea9e064d 1262f3df654e8927fa130cf296bddb36 { 'aliquot_tag': 'ALQ_7bccd0a7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-01304.RNA-Seq.R1_L006.T C3L-01304 UCEC RNA-Seq tumor CPT0064210009 170828_UNC31-K00269_0077_AHLF33BBXX_GTGGCC_S21_L006_R1_001.fastq.gz 3796845587 FASTQ R1_L006 unaligned CPTAC3 2c0d1a81-0278-4dcf-99b1-8b846369e7a2 6f2201edc2b985abf0157fc34fb77f4c { 'aliquot_tag': 'ALQ_23934246', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01304.RNA-Seq.R2_L001.A C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L001_R2_001.fastq.gz 4712930558 FASTQ R2_L001 unaligned CPTAC3 9272b657-6b27-4628-adff-898271064f68 549196aad6f244bb99468d4b500d5068 { 'aliquot_tag': 'ALQ_7bccd0a7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-01304.RNA-Seq.R2_L006.T C3L-01304 UCEC RNA-Seq tumor CPT0064210009 170828_UNC31-K00269_0077_AHLF33BBXX_GTGGCC_S21_L006_R2_001.fastq.gz 4071894153 FASTQ R2_L006 unaligned CPTAC3 06f5c317-1033-4c7a-b439-095b129762d6 44043ee45cc72e68674581e5dadda24b { 'aliquot_tag': 'ALQ_23934246', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01304.RNA-Seq.T C3L-01304 UCEC RNA-Seq tumor CPT0349840001 20210723_P2_D2_WB7988-plate2_S38_R1_001.fastq.gz 7713671923 FASTQ unaligned CPTAC3 c114febc-6ef4-4c4a-8058-afef0e30d834 38eab746c7cc22283e75c50f40c6e1a8 +C3L-01304.RNA-Seq.T C3L-01304 UCEC RNA-Seq tumor CPT0349840001 20210723_P2_D2_WB7988-plate2_S38_R2_001.fastq.gz 7866103332 FASTQ unaligned CPTAC3 e40e052c-bd9e-4551-8c7f-f0437c260e39 eb281d5c100ea9d34d4e279d2c196008 C3L-01304.RNA-Seq.transcriptome.A.hg38 C3L-01304 UCEC RNA-Seq tissue_normal CPT0064240006 00c8b8e2-4093-49bc-9124-ca075a707571.rna_seq.transcriptome.gdc_realn.bam 10477901118 BAM transcriptome harmonized CPTAC3 fab9f52f-f2e6-438c-83b5-b4c76fef7fc9 2947cfa832c90c2b99277892b2a62bb0 { 'aliquot_tag': 'ALQ_7bccd0a7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01304.RNA-Seq.transcriptome.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0064210009 48431b07-9e30-47cf-9419-5252f720d63f.rna_seq.transcriptome.gdc_realn.bam 8746992454 BAM transcriptome harmonized CPTAC3 a00e97b8-eb7c-459a-9f3d-12f951ac2d29 b1b30244beca54b8e145d0831051c397 { 'aliquot_tag': 'ALQ_23934246', 'gdc_sample_type': 'Primary Tumor' } +C3L-01304.RNA-Seq.transcriptome.T.hg38 C3L-01304 UCEC RNA-Seq tumor CPT0349840001 bdf7034a-9247-4a9d-8d6e-ffc6151edca9.rna_seq.transcriptome.gdc_realn.bam 6270689646 BAM transcriptome harmonized CPTAC3 9fc830a3-969d-4fae-8ffe-184b2450750d 0ec57a02f6af2e88487b4ebaae5398c2 { 'aliquot_tag': 'ALQ_5e4c3c1a', 'gdc_sample_type': 'Primary Tumor' } C3L-01304.WGS.A C3L-01304 UCEC WGS tissue_normal CPT0064240009 CPT0064240009.WholeGenome.RP-1303.bam 51306084781 BAM aligned CPTAC3 dfd2667d-e4b4-4fe6-9cc4-39e87e65637a 827473cfd79b4d88b7697968f10ca7fe { 'aliquot_tag': 'ALQ_eb73cd36', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01304.WGS.A.hg38 C3L-01304 UCEC WGS tissue_normal CPT0064240009 fd423c83-6aaf-431a-8d73-d73f358928cb_wgs_gdc_realn.bam 77117474013 BAM harmonized CPTAC3 6c3358e5-f144-4dff-af39-440329b2eec6 3e5f0b3b2b45944f94802bad013512c3 { 'aliquot_tag': 'ALQ_eb73cd36', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01304.WGS.N C3L-01304 UCEC WGS blood_normal CPT0065400002 CPT0065400002.WholeGenome.RP-1303.bam 72928606541 BAM aligned CPTAC3 48de75d2-2757-494f-8280-98b81e98b4f9 39c2fb2f423443959f268084b31e0075 { 'aliquot_tag': 'ALQ_f90f5ad7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6725,16 +7327,19 @@ C3L-01307.miRNA-Seq.T C3L-01307 UCEC miRNA-Seq tumor CPT0064290010 181119_UNC31- C3L-01307.miRNA-Seq.T.hg38 C3L-01307 UCEC miRNA-Seq tumor CPT0064290010 ea57121d-52ad-4d55-9c0a-58036fc976dc_mirnaseq_gdc_realn.bam 263452475 BAM harmonized CPTAC3 37468c3c-69bd-45e0-9ca1-e6c8bce709df acce7c00e625252b6e4f1c0697c0e8da { 'aliquot_tag': 'ALQ_73248062', 'gdc_sample_type': 'Primary Tumor' } C3L-01307.RNA-Seq.chimeric.A.hg38 C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 e8f31f7d-5b9b-4b1d-934e-c9ab264cb81d.rna_seq.chimeric.gdc_realn.bam 51068073 BAM chimeric harmonized CPTAC3 606d940b-1b19-401f-ab37-61288b7ae517 44b63231c069221a87c2a7df33bd14bd { 'aliquot_tag': 'ALQ_3fd0f6a2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01307.RNA-Seq.chimeric.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0064290010 3a36c7b6-cca9-42f4-a531-8e40cf7399d1.rna_seq.chimeric.gdc_realn.bam 25818318 BAM chimeric harmonized CPTAC3 28cb6cd2-4790-4359-9974-133894caa5b5 ffedcf31a2a041121b3637b3834ec609 { 'aliquot_tag': 'ALQ_73248062', 'gdc_sample_type': 'Primary Tumor' } -C3L-01307.RNA-Seq.genomic.A.hg38 C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 e8f31f7d-5b9b-4b1d-934e-c9ab264cb81d.rna_seq.genomic.gdc_realn.bam 7629721973 BAM genomic harmonized CPTAC3 9fe61dc6-826d-447f-99e6-7c421ecb5a89 d9e99b0b97485db31002e36b8e1af71b { 'aliquot_tag': 'ALQ_3fd0f6a2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01307.RNA-Seq.genomic.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0064290010 3a36c7b6-cca9-42f4-a531-8e40cf7399d1.rna_seq.genomic.gdc_realn.bam 8504785377 BAM genomic harmonized CPTAC3 19b49083-babf-4778-b83e-eac9407d2493 10989975e146f21cce9f553f2297958e { 'aliquot_tag': 'ALQ_73248062', 'gdc_sample_type': 'Primary Tumor' } -C3L-01307.RNA-Seq.R1_L001.A C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L001_R1_001.fastq.gz 3555781101 FASTQ R1_L001 unaligned CPTAC3 636ef258-acbd-443f-99c4-8966ebf303af 56a95f391518662af36b081d90da9b64 { 'aliquot_tag': 'ALQ_3fd0f6a2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01307.RNA-Seq.R1_L006.T C3L-01307 UCEC RNA-Seq tumor CPT0064290010 170828_UNC31-K00269_0077_AHLF33BBXX_GTTTCG_S23_L006_R1_001.fastq.gz 3544549729 FASTQ R1_L006 unaligned CPTAC3 7eae300f-fe7f-4059-876c-659d575a8f34 d9083db11e8d95ed29853119c2840627 { 'aliquot_tag': 'ALQ_73248062', 'gdc_sample_type': 'Primary Tumor' } -C3L-01307.RNA-Seq.R1_.T C3L-01307 UCEC RNA-Seq tumor CPT0349890001 20210723_P2_A6_WB7988-plate2_S6_R1_001.fastq.gz 7130401343 FASTQ R1_ unaligned CPTAC3 12e75f64-1024-486b-a2f2-c5ac91f686a9 0aadaab03bdcfa6e190b3b2e14e258c7 { 'aliquot_tag': 'ALQ_a6dcf8ab', 'gdc_sample_type': 'Primary Tumor' } -C3L-01307.RNA-Seq.R2_L001.A C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L001_R2_001.fastq.gz 4035262942 FASTQ R2_L001 unaligned CPTAC3 8b68efdb-23b2-4936-8426-1d26933f64a5 926db222d273df86768252ab576ec3de { 'aliquot_tag': 'ALQ_3fd0f6a2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01307.RNA-Seq.R2_L006.T C3L-01307 UCEC RNA-Seq tumor CPT0064290010 170828_UNC31-K00269_0077_AHLF33BBXX_GTTTCG_S23_L006_R2_001.fastq.gz 3814839038 FASTQ R2_L006 unaligned CPTAC3 9ad113e3-3bed-4906-a9d0-adc6e81379b4 1165c13796ba9c5c61101ec5a399f029 { 'aliquot_tag': 'ALQ_73248062', 'gdc_sample_type': 'Primary Tumor' } -C3L-01307.RNA-Seq.R2_.T C3L-01307 UCEC RNA-Seq tumor CPT0349890001 20210723_P2_A6_WB7988-plate2_S6_R2_001.fastq.gz 7271813472 FASTQ R2_ unaligned CPTAC3 4c195d07-8889-4931-8640-43d82b4a8980 f9ed4fec112123140fdff1d1ad1ab8bc { 'aliquot_tag': 'ALQ_a6dcf8ab', 'gdc_sample_type': 'Primary Tumor' } +C3L-01307.RNA-Seq.chimeric.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0349890001 a1320733-a5cd-4545-9bdb-24151f10e5f1.rna_seq.chimeric.gdc_realn.bam 251487502 BAM chimeric harmonized CPTAC3 aa78218b-dd01-41ef-aea0-f00ea39387b2 35fa90dd5f6f0230296489176e0a3d18 { 'aliquot_tag': 'ALQ_a6dcf8ab', 'gdc_sample_type': 'Primary Tumor' } +C3L-01307.RNA-Seq.genomic.A.hg38 C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 e8f31f7d-5b9b-4b1d-934e-c9ab264cb81d.rna_seq.genomic.gdc_realn.bam 7629721973 BAM genomic harmonized CPTAC3 96239e4f-6e09-4866-8194-eab8bc3e3a50 d9e99b0b97485db31002e36b8e1af71b { 'aliquot_tag': 'ALQ_3fd0f6a2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01307.RNA-Seq.genomic.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0064290010 3a36c7b6-cca9-42f4-a531-8e40cf7399d1.rna_seq.genomic.gdc_realn.bam 8504785377 BAM genomic harmonized CPTAC3 4accf41b-0a00-45b2-b55b-bf1bd045c4f3 10989975e146f21cce9f553f2297958e { 'aliquot_tag': 'ALQ_73248062', 'gdc_sample_type': 'Primary Tumor' } +C3L-01307.RNA-Seq.genomic.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0349890001 a1320733-a5cd-4545-9bdb-24151f10e5f1.rna_seq.genomic.gdc_realn.bam 12715573127 BAM genomic harmonized CPTAC3 adc68649-9239-4234-a4b7-5cb87ed40680 03a846b05f576d305f8dcd2542614061 { 'aliquot_tag': 'ALQ_a6dcf8ab', 'gdc_sample_type': 'Primary Tumor' } +C3L-01307.RNA-Seq.R1_L001.A C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L001_R1_001.fastq.gz 3555781101 FASTQ R1_L001 unaligned CPTAC3 636ef258-acbd-443f-99c4-8966ebf303af 56a95f391518662af36b081d90da9b64 { 'aliquot_tag': 'ALQ_3fd0f6a2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-01307.RNA-Seq.R1_L006.T C3L-01307 UCEC RNA-Seq tumor CPT0064290010 170828_UNC31-K00269_0077_AHLF33BBXX_GTTTCG_S23_L006_R1_001.fastq.gz 3544549729 FASTQ R1_L006 unaligned CPTAC3 7eae300f-fe7f-4059-876c-659d575a8f34 d9083db11e8d95ed29853119c2840627 { 'aliquot_tag': 'ALQ_73248062', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01307.RNA-Seq.R2_L001.A C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L001_R2_001.fastq.gz 4035262942 FASTQ R2_L001 unaligned CPTAC3 8b68efdb-23b2-4936-8426-1d26933f64a5 926db222d273df86768252ab576ec3de { 'aliquot_tag': 'ALQ_3fd0f6a2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-01307.RNA-Seq.R2_L006.T C3L-01307 UCEC RNA-Seq tumor CPT0064290010 170828_UNC31-K00269_0077_AHLF33BBXX_GTTTCG_S23_L006_R2_001.fastq.gz 3814839038 FASTQ R2_L006 unaligned CPTAC3 9ad113e3-3bed-4906-a9d0-adc6e81379b4 1165c13796ba9c5c61101ec5a399f029 { 'aliquot_tag': 'ALQ_73248062', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01307.RNA-Seq.T C3L-01307 UCEC RNA-Seq tumor CPT0349890001 20210723_P2_A6_WB7988-plate2_S6_R1_001.fastq.gz 7130401343 FASTQ unaligned CPTAC3 12e75f64-1024-486b-a2f2-c5ac91f686a9 0aadaab03bdcfa6e190b3b2e14e258c7 +C3L-01307.RNA-Seq.T C3L-01307 UCEC RNA-Seq tumor CPT0349890001 20210723_P2_A6_WB7988-plate2_S6_R2_001.fastq.gz 7271813472 FASTQ unaligned CPTAC3 4c195d07-8889-4931-8640-43d82b4a8980 f9ed4fec112123140fdff1d1ad1ab8bc C3L-01307.RNA-Seq.transcriptome.A.hg38 C3L-01307 UCEC RNA-Seq tissue_normal CPT0064320006 e8f31f7d-5b9b-4b1d-934e-c9ab264cb81d.rna_seq.transcriptome.gdc_realn.bam 9810130636 BAM transcriptome harmonized CPTAC3 40cb9726-0b5d-4e15-96ca-40cd38f2eb7f 5cfed833d07790c09ac9714d6459de85 { 'aliquot_tag': 'ALQ_3fd0f6a2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01307.RNA-Seq.transcriptome.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0064290010 3a36c7b6-cca9-42f4-a531-8e40cf7399d1.rna_seq.transcriptome.gdc_realn.bam 8420796920 BAM transcriptome harmonized CPTAC3 a0a87df8-f7a9-4750-8bb0-97a63d55e5c3 3ed38774a505a86fae85e4031aaf5e79 { 'aliquot_tag': 'ALQ_73248062', 'gdc_sample_type': 'Primary Tumor' } +C3L-01307.RNA-Seq.transcriptome.T.hg38 C3L-01307 UCEC RNA-Seq tumor CPT0349890001 a1320733-a5cd-4545-9bdb-24151f10e5f1.rna_seq.transcriptome.gdc_realn.bam 6556240377 BAM transcriptome harmonized CPTAC3 206703f0-488e-4a8a-9d48-c902f9ec3989 a100f7ae1835e4c68847dd0080c40768 { 'aliquot_tag': 'ALQ_a6dcf8ab', 'gdc_sample_type': 'Primary Tumor' } C3L-01307.WGS.A C3L-01307 UCEC WGS tissue_normal CPT0064320009 CPT0064320009.WholeGenome.RP-1303.bam 68419765531 BAM aligned CPTAC3 79d6ad3c-2b59-462f-9757-5fa72f1c582c f571d62c265f86101014c297e4ea1a37 { 'aliquot_tag': 'ALQ_af6feb33', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01307.WGS.A.hg38 C3L-01307 UCEC WGS tissue_normal CPT0064320009 31bfb1b0-4534-4f58-ad1c-77ca6cd3ffbe_wgs_gdc_realn.bam 99278989048 BAM harmonized CPTAC3 414b2b53-2c2a-4fac-8822-d56bf42d8914 b6d194349edcde0027432c9aaa76581a { 'aliquot_tag': 'ALQ_af6feb33', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01307.WGS.N C3L-01307 UCEC WGS blood_normal CPT0065410002 CPT0065410002.WholeGenome.RP-1303.bam 82558697786 BAM aligned CPTAC3 11093004-4cec-48c3-9144-c14118e21192 66868665750d62465bf00abb7ec1c7d8 { 'aliquot_tag': 'ALQ_c46f7367', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6755,16 +7360,19 @@ C3L-01311.miRNA-Seq.T C3L-01311 UCEC miRNA-Seq tumor CPT0077770006 181012_UNC32- C3L-01311.miRNA-Seq.T.hg38 C3L-01311 UCEC miRNA-Seq tumor CPT0077770006 c4cec702-2a15-4315-8a3c-559d3c2243f8_mirnaseq_gdc_realn.bam 313353360 BAM harmonized CPTAC3 8a98ede5-315c-43e5-b16e-8ff4c80c7591 63f0e304526f9e4a2afde4e882d4ba0d { 'aliquot_tag': 'ALQ_91e321c7', 'gdc_sample_type': 'Primary Tumor' } C3L-01311.RNA-Seq.chimeric.A.hg38 C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 6c8e3af5-9adf-457d-a108-58ad5b57c6f4.rna_seq.chimeric.gdc_realn.bam 139650560 BAM chimeric harmonized CPTAC3 48afa087-478a-4c9f-bcc8-4cad98ebc34b b634de80285375b734d682d184e1a4cb { 'aliquot_tag': 'ALQ_13b3b616', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01311.RNA-Seq.chimeric.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0077770006 40520155-cef3-46d1-a6f4-9d6b7005a6de.rna_seq.chimeric.gdc_realn.bam 172410517 BAM chimeric harmonized CPTAC3 0c75c3cf-50e8-4eb6-b3ba-0dcf679c8a67 ff9efb36245c2f5b8701e6b1ad3021ef { 'aliquot_tag': 'ALQ_91e321c7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01311.RNA-Seq.genomic.A.hg38 C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 6c8e3af5-9adf-457d-a108-58ad5b57c6f4.rna_seq.genomic.gdc_realn.bam 8507029863 BAM genomic harmonized CPTAC3 92e815d0-8672-4e8a-b2c9-b6ff6140eb44 f43035ed5d7bd0a9c245eae51fd74b3a { 'aliquot_tag': 'ALQ_13b3b616', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01311.RNA-Seq.genomic.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0077770006 40520155-cef3-46d1-a6f4-9d6b7005a6de.rna_seq.genomic.gdc_realn.bam 8518332242 BAM genomic harmonized CPTAC3 71bcfafc-cd68-46af-8888-eacca980f5c5 f74b97aa9e1d50bc102d3d97cedea8aa { 'aliquot_tag': 'ALQ_91e321c7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01311.RNA-Seq.R1_L002.A C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L002_R1_001.fastq.gz 4055784418 FASTQ R1_L002 unaligned CPTAC3 46a9c137-590c-40f8-83a9-848a8d0437a5 68d00a6f09931f5e051fcb0d445ca958 { 'aliquot_tag': 'ALQ_13b3b616', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01311.RNA-Seq.R1_L003.T C3L-01311 UCEC RNA-Seq tumor CPT0077770006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATTCCT_S12_L003_R1_001.fastq.gz 4125388941 FASTQ R1_L003 unaligned CPTAC3 391b8dfd-1857-41ff-8af2-ea0830668f60 b4ed34ecfec57540151a185a7c998536 { 'aliquot_tag': 'ALQ_91e321c7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01311.RNA-Seq.R1_.T C3L-01311 UCEC RNA-Seq tumor CPT0349900001 20210729_P3_H4_WB7988-Plate3_S88_R1_001.fastq.gz 6177807684 FASTQ R1_ unaligned CPTAC3 f0441d62-5b57-436f-9024-09fdb1312f4a e722f1fadf82e8ad4c9c7226cfaeef34 { 'aliquot_tag': 'ALQ_6090497f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01311.RNA-Seq.R2_L002.A C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L002_R2_001.fastq.gz 4516971985 FASTQ R2_L002 unaligned CPTAC3 7bcd0306-0e63-4202-88b1-1ed2497e3547 6c5e7e0df2ed004d82923b6c5ef2d475 { 'aliquot_tag': 'ALQ_13b3b616', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01311.RNA-Seq.R2_L003.T C3L-01311 UCEC RNA-Seq tumor CPT0077770006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATTCCT_S12_L003_R2_001.fastq.gz 4477169908 FASTQ R2_L003 unaligned CPTAC3 5b4f8676-cead-4e7a-b932-58fb3d37f3a1 95fba85ae6b9d7d6548a736e8e8db3da { 'aliquot_tag': 'ALQ_91e321c7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01311.RNA-Seq.R2_.T C3L-01311 UCEC RNA-Seq tumor CPT0349900001 20210729_P3_H4_WB7988-Plate3_S88_R2_001.fastq.gz 6375668356 FASTQ R2_ unaligned CPTAC3 e64eac34-5a52-4ed5-a7c8-ab8841b16c69 5ce5f69c445db083389086c9d3d88c19 { 'aliquot_tag': 'ALQ_6090497f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01311.RNA-Seq.chimeric.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0349900001 ad1f66de-1ad0-406f-a093-e401d7402af4.rna_seq.chimeric.gdc_realn.bam 197448413 BAM chimeric harmonized CPTAC3 55f4ee24-73dc-44d2-992a-6886eba79056 c2c5ee04ac41814398bc68b0d63f2b2f { 'aliquot_tag': 'ALQ_6090497f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01311.RNA-Seq.genomic.A.hg38 C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 6c8e3af5-9adf-457d-a108-58ad5b57c6f4.rna_seq.genomic.gdc_realn.bam 8507029863 BAM genomic harmonized CPTAC3 f7b48b5f-af28-48b3-8dcf-21924924a42e f43035ed5d7bd0a9c245eae51fd74b3a { 'aliquot_tag': 'ALQ_13b3b616', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01311.RNA-Seq.genomic.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0077770006 40520155-cef3-46d1-a6f4-9d6b7005a6de.rna_seq.genomic.gdc_realn.bam 8518332242 BAM genomic harmonized CPTAC3 51ef905e-ffb6-4d76-8e88-d5216ddd2509 f74b97aa9e1d50bc102d3d97cedea8aa { 'aliquot_tag': 'ALQ_91e321c7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01311.RNA-Seq.genomic.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0349900001 ad1f66de-1ad0-406f-a093-e401d7402af4.rna_seq.genomic.gdc_realn.bam 9488373231 BAM genomic harmonized CPTAC3 6995645a-6603-4f9f-81dc-7be65068ed38 6dfc19bf7a0d883788fb886f68781943 { 'aliquot_tag': 'ALQ_6090497f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01311.RNA-Seq.R1_L002.A C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L002_R1_001.fastq.gz 4055784418 FASTQ R1_L002 unaligned CPTAC3 46a9c137-590c-40f8-83a9-848a8d0437a5 68d00a6f09931f5e051fcb0d445ca958 { 'aliquot_tag': 'ALQ_13b3b616', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01311.RNA-Seq.R1_L003.T C3L-01311 UCEC RNA-Seq tumor CPT0077770006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATTCCT_S12_L003_R1_001.fastq.gz 4125388941 FASTQ R1_L003 unaligned CPTAC3 391b8dfd-1857-41ff-8af2-ea0830668f60 b4ed34ecfec57540151a185a7c998536 { 'aliquot_tag': 'ALQ_91e321c7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01311.RNA-Seq.R2_L002.A C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L002_R2_001.fastq.gz 4516971985 FASTQ R2_L002 unaligned CPTAC3 7bcd0306-0e63-4202-88b1-1ed2497e3547 6c5e7e0df2ed004d82923b6c5ef2d475 { 'aliquot_tag': 'ALQ_13b3b616', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01311.RNA-Seq.R2_L003.T C3L-01311 UCEC RNA-Seq tumor CPT0077770006 170905_UNC31-K00269_0079_AHLCF7BBXX_ATTCCT_S12_L003_R2_001.fastq.gz 4477169908 FASTQ R2_L003 unaligned CPTAC3 5b4f8676-cead-4e7a-b932-58fb3d37f3a1 95fba85ae6b9d7d6548a736e8e8db3da { 'aliquot_tag': 'ALQ_91e321c7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01311.RNA-Seq.T C3L-01311 UCEC RNA-Seq tumor CPT0349900001 20210729_P3_H4_WB7988-Plate3_S88_R1_001.fastq.gz 6177807684 FASTQ unaligned CPTAC3 f0441d62-5b57-436f-9024-09fdb1312f4a e722f1fadf82e8ad4c9c7226cfaeef34 +C3L-01311.RNA-Seq.T C3L-01311 UCEC RNA-Seq tumor CPT0349900001 20210729_P3_H4_WB7988-Plate3_S88_R2_001.fastq.gz 6375668356 FASTQ unaligned CPTAC3 e64eac34-5a52-4ed5-a7c8-ab8841b16c69 5ce5f69c445db083389086c9d3d88c19 C3L-01311.RNA-Seq.transcriptome.A.hg38 C3L-01311 UCEC RNA-Seq tissue_normal CPT0077780006 6c8e3af5-9adf-457d-a108-58ad5b57c6f4.rna_seq.transcriptome.gdc_realn.bam 9840938984 BAM transcriptome harmonized CPTAC3 3f1a626b-5e02-497a-80ad-4ff633bc2911 90c0e2764a36319ee9f5690dbdbd497f { 'aliquot_tag': 'ALQ_13b3b616', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01311.RNA-Seq.transcriptome.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0077770006 40520155-cef3-46d1-a6f4-9d6b7005a6de.rna_seq.transcriptome.gdc_realn.bam 11280475073 BAM transcriptome harmonized CPTAC3 f0f40f39-a6da-4da1-8fad-8e9d7c9a9677 4fc3eab76c2b83e34625fbae5ec0d366 { 'aliquot_tag': 'ALQ_91e321c7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01311.RNA-Seq.transcriptome.T.hg38 C3L-01311 UCEC RNA-Seq tumor CPT0349900001 ad1f66de-1ad0-406f-a093-e401d7402af4.rna_seq.transcriptome.gdc_realn.bam 5060040897 BAM transcriptome harmonized CPTAC3 c956bd5f-c932-47f4-8b3c-acc87bdbf130 10550093ee493aca6e0936ad79cae2ba { 'aliquot_tag': 'ALQ_6090497f', 'gdc_sample_type': 'Primary Tumor' } C3L-01311.WGS.A C3L-01311 UCEC WGS tissue_normal CPT0077780009 CPT0077780009.WholeGenome.RP-1303.bam 51982784575 BAM aligned CPTAC3 f140760d-3c58-4cda-856d-334d58cfb2e2 73944346b013ec120e9fba76b8fb6c4f { 'aliquot_tag': 'ALQ_830cab87', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01311.WGS.A.hg38 C3L-01311 UCEC WGS tissue_normal CPT0077780009 86110805-316c-40e9-b3f6-1801b343cf7b_wgs_gdc_realn.bam 77353099444 BAM harmonized CPTAC3 4d910b82-92f6-42e4-a27f-2e134d0a894f 0881274e85ac6368006ada4220d24ae1 { 'aliquot_tag': 'ALQ_830cab87', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01311.WGS.N C3L-01311 UCEC WGS blood_normal CPT0080090002 CPT0080090002.WholeGenome.RP-1303.bam 63605626281 BAM aligned CPTAC3 663f16bf-4fc8-4e95-9a89-90facb986d7c 68a800564f7106404ed8e9c99c9b935f { 'aliquot_tag': 'ALQ_283c4725', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6782,12 +7390,15 @@ C3L-01312.MethArray.Red.T C3L-01312 UCEC Methylation Array tumor CPT0063670006 2 C3L-01312.miRNA-Seq.T C3L-01312 UCEC miRNA-Seq tumor CPT0063670009 180924_UNC31-K00269_0154_AHWTMLBBXX_GTGGCC_S11_L003_R1_001.unaln.bam 335971058 BAM unaligned CPTAC3 e7f4bba8-f1fe-44fd-a59e-b57367b586a6 d4d28e1ba7b6db1b3d3dec29e3573d59 { 'aliquot_tag': 'ALQ_f2e5cb7e', 'gdc_sample_type': 'Primary Tumor' } C3L-01312.miRNA-Seq.T.hg38 C3L-01312 UCEC miRNA-Seq tumor CPT0063670009 4d40f8e1-8327-4d33-bf81-ce287c04b086_mirnaseq_gdc_realn.bam 366281372 BAM harmonized CPTAC3 38d39888-62da-40fb-a17f-fd85c69ca7fa 6f72c44568bc7312877c7cd90b65b9ca { 'aliquot_tag': 'ALQ_f2e5cb7e', 'gdc_sample_type': 'Primary Tumor' } C3L-01312.RNA-Seq.chimeric.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0063670009 fa32d14e-a742-473f-920f-86b667cfe9cd.rna_seq.chimeric.gdc_realn.bam 35009826 BAM chimeric harmonized CPTAC3 dc958f85-338f-46da-866e-0c5be631351d cc5f3dc1e33a8a38ff6de25e3633b034 { 'aliquot_tag': 'ALQ_f2e5cb7e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01312.RNA-Seq.genomic.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0063670009 fa32d14e-a742-473f-920f-86b667cfe9cd.rna_seq.genomic.gdc_realn.bam 8806227526 BAM genomic harmonized CPTAC3 0b5b8ed1-067f-4813-8991-41f94efaa799 6cb8b0ff2f274e98e2e1508b074f9e3b { 'aliquot_tag': 'ALQ_f2e5cb7e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01312.RNA-Seq.R1_L008.T C3L-01312 UCEC RNA-Seq tumor CPT0063670009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L008_R1_001.fastq.gz 4294742113 FASTQ R1_L008 unaligned CPTAC3 bcbd006a-fd60-43db-905d-aa6e729f314a 1586574a96d8358b8d3a0adc95a5126a { 'aliquot_tag': 'ALQ_f2e5cb7e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01312.RNA-Seq.R1_.T C3L-01312 UCEC RNA-Seq tumor CPT0349910001 20210723_P2_H9_WB7988-plate2_S93_R1_001.fastq.gz 3293285610 FASTQ R1_ unaligned CPTAC3 1086fe42-7b9a-4e51-ae28-ad047ae45940 dcc7bba3d34e2615c1d40424bca060b6 { 'aliquot_tag': 'ALQ_5df060cf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01312.RNA-Seq.R2_L008.T C3L-01312 UCEC RNA-Seq tumor CPT0063670009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L008_R2_001.fastq.gz 4571900403 FASTQ R2_L008 unaligned CPTAC3 f3db77a2-db19-4942-8c2e-3b69f81a956b 94122c45f1902b6bb6e30b9a161ad66e { 'aliquot_tag': 'ALQ_f2e5cb7e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01312.RNA-Seq.R2_.T C3L-01312 UCEC RNA-Seq tumor CPT0349910001 20210723_P2_H9_WB7988-plate2_S93_R2_001.fastq.gz 3410281180 FASTQ R2_ unaligned CPTAC3 33574452-d1cb-4331-b99a-ce281a7fd7ec f5a8e12d1fbab56cfbadc84230a2755a { 'aliquot_tag': 'ALQ_5df060cf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01312.RNA-Seq.chimeric.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0349910001 8ed2a510-46fe-42b7-ad6d-5a95c8fd209a.rna_seq.chimeric.gdc_realn.bam 111928471 BAM chimeric harmonized CPTAC3 b831018b-5dea-4c27-bf10-b1bf04b8df0b 3a649323e2cb22c8c2550aa591019036 { 'aliquot_tag': 'ALQ_5df060cf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01312.RNA-Seq.genomic.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0063670009 fa32d14e-a742-473f-920f-86b667cfe9cd.rna_seq.genomic.gdc_realn.bam 8806227526 BAM genomic harmonized CPTAC3 5f2d09f6-084f-4623-983b-3dd81be032bb 6cb8b0ff2f274e98e2e1508b074f9e3b { 'aliquot_tag': 'ALQ_f2e5cb7e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01312.RNA-Seq.genomic.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0349910001 8ed2a510-46fe-42b7-ad6d-5a95c8fd209a.rna_seq.genomic.gdc_realn.bam 5934755667 BAM genomic harmonized CPTAC3 a3bb00e9-b296-4967-b002-151f861ca95e b8dc3c7393e43eb9da96dc7ae9bb9aab { 'aliquot_tag': 'ALQ_5df060cf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01312.RNA-Seq.R1_L008.T C3L-01312 UCEC RNA-Seq tumor CPT0063670009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L008_R1_001.fastq.gz 4294742113 FASTQ R1_L008 unaligned CPTAC3 bcbd006a-fd60-43db-905d-aa6e729f314a 1586574a96d8358b8d3a0adc95a5126a { 'aliquot_tag': 'ALQ_f2e5cb7e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01312.RNA-Seq.R2_L008.T C3L-01312 UCEC RNA-Seq tumor CPT0063670009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L008_R2_001.fastq.gz 4571900403 FASTQ R2_L008 unaligned CPTAC3 f3db77a2-db19-4942-8c2e-3b69f81a956b 94122c45f1902b6bb6e30b9a161ad66e { 'aliquot_tag': 'ALQ_f2e5cb7e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-01312.RNA-Seq.T C3L-01312 UCEC RNA-Seq tumor CPT0349910001 20210723_P2_H9_WB7988-plate2_S93_R1_001.fastq.gz 3293285610 FASTQ unaligned CPTAC3 1086fe42-7b9a-4e51-ae28-ad047ae45940 dcc7bba3d34e2615c1d40424bca060b6 +C3L-01312.RNA-Seq.T C3L-01312 UCEC RNA-Seq tumor CPT0349910001 20210723_P2_H9_WB7988-plate2_S93_R2_001.fastq.gz 3410281180 FASTQ unaligned CPTAC3 33574452-d1cb-4331-b99a-ce281a7fd7ec f5a8e12d1fbab56cfbadc84230a2755a C3L-01312.RNA-Seq.transcriptome.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0063670009 fa32d14e-a742-473f-920f-86b667cfe9cd.rna_seq.transcriptome.gdc_realn.bam 12044310676 BAM transcriptome harmonized CPTAC3 95656a10-6ddd-41f7-9053-32763798b318 8fc19ffdf24b498f42f6c37ae0f28cd1 { 'aliquot_tag': 'ALQ_f2e5cb7e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01312.RNA-Seq.transcriptome.T.hg38 C3L-01312 UCEC RNA-Seq tumor CPT0349910001 8ed2a510-46fe-42b7-ad6d-5a95c8fd209a.rna_seq.transcriptome.gdc_realn.bam 2839108855 BAM transcriptome harmonized CPTAC3 98dee3b4-f428-4f63-aa88-0e9c6b8093dd e5a14f8197ef3f1d0ab89e4e0b37aacc { 'aliquot_tag': 'ALQ_5df060cf', 'gdc_sample_type': 'Primary Tumor' } C3L-01312.WGS.N C3L-01312 UCEC WGS blood_normal CPT0065300002 CPT0065300002.WholeGenome.RP-1303.bam 63433344995 BAM aligned CPTAC3 2e824a60-afa4-4bce-b300-2704302d6be1 de910e770dd86d82247cbc588cd7c7ff { 'aliquot_tag': 'ALQ_e40a6a6f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01312.WGS.N.hg38 C3L-01312 UCEC WGS blood_normal CPT0065300002 21d6d362-118e-4dfe-9130-7aeb1bf82058_gdc_realn.bam 95091191377 BAM harmonized CPTAC3 76e906be-7778-4801-9ae9-6200be0649d4 ddca55caedf3485d6834c064c3a01297 { 'aliquot_tag': 'ALQ_e40a6a6f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01312.WGS.T C3L-01312 UCEC WGS tumor CPT0063670006 CPT0063670006.WholeGenome.RP-1303.bam 71881836416 BAM aligned CPTAC3 322484a4-e91b-494d-a6c1-c31c6c218369 ab463fd668cffdaeff5f1e0aa1a997cf { 'aliquot_tag': 'ALQ_625ad6ef', 'gdc_sample_type': 'Primary Tumor' } @@ -6806,12 +7417,12 @@ C3L-01313.miRNA-Seq.T C3L-01313 CCRCC miRNA-Seq tumor CPT0086820006 181108_UNC31 C3L-01313.miRNA-Seq.T.hg38 C3L-01313 CCRCC miRNA-Seq tumor CPT0086820006 a27e2d9d-f555-4914-af17-a0dc87ebb2bd_mirnaseq_gdc_realn.bam 217922284 BAM harmonized CPTAC3 7f271074-ce07-4dec-9c49-2b5d31494b29 acb91b5908c4bf12d3adc0d6230a82fa { 'aliquot_tag': 'ALQ_d702057a', 'gdc_sample_type': 'Primary Tumor' } C3L-01313.RNA-Seq.chimeric.A.hg38 C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 d4d369f1-ed9d-4429-8cc4-58939d240436.rna_seq.chimeric.gdc_realn.bam 100727254 BAM chimeric harmonized CPTAC3 48f4bf52-0191-4cb6-ad9b-7c9da13078c7 bc6b76bdaa18e0aae6410aa9988c9c2f { 'aliquot_tag': 'ALQ_ea622cca', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01313.RNA-Seq.chimeric.T.hg38 C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 ebefe30b-f161-414b-8fe4-02736ec93649.rna_seq.chimeric.gdc_realn.bam 33125804 BAM chimeric harmonized CPTAC3 ccaa2820-38f9-41f4-aef4-5e71acfccb0f 0e164daa4ffebb6c1a9f96118ba73273 { 'aliquot_tag': 'ALQ_d702057a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01313.RNA-Seq.genomic.A.hg38 C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 d4d369f1-ed9d-4429-8cc4-58939d240436.rna_seq.genomic.gdc_realn.bam 7524182379 BAM genomic harmonized CPTAC3 c8380f18-2225-4128-92a0-24ad8cf0d807 e40a34778bc048fadf2fae1594b42b78 { 'aliquot_tag': 'ALQ_ea622cca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01313.RNA-Seq.genomic.T.hg38 C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 ebefe30b-f161-414b-8fe4-02736ec93649.rna_seq.genomic.gdc_realn.bam 6936812821 BAM genomic harmonized CPTAC3 3589b243-b8fa-4f26-8dec-988dfe631ff6 7387ffddc74528b245aecea46dfa4100 { 'aliquot_tag': 'ALQ_d702057a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01313.RNA-Seq.R1_L002.A C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTTCC_S5_L002_R1_001.fastq.gz 3913365668 FASTQ R1_L002 unaligned CPTAC3 352bd1f3-e4b4-4883-8b16-2bca8faa3175 2ed8f09a9f96c899f50f9a71ac572b7e { 'aliquot_tag': 'ALQ_ea622cca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01313.RNA-Seq.R1_L006.T C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGAAA_S16_L006_R1_001.fastq.gz 3527851467 FASTQ R1_L006 unaligned CPTAC3 0138a8d4-1eda-45fc-9516-eee215e5cebc 678860e5bf2251e7dd80f8285266feb3 { 'aliquot_tag': 'ALQ_d702057a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01313.RNA-Seq.R2_L002.A C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTTCC_S5_L002_R2_001.fastq.gz 4071605231 FASTQ R2_L002 unaligned CPTAC3 c617733c-0b14-473b-a21d-fd0849bac86e 5203e7fc8ce62bc54478b6edb4ca477b { 'aliquot_tag': 'ALQ_ea622cca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01313.RNA-Seq.R2_L006.T C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGAAA_S16_L006_R2_001.fastq.gz 3424569482 FASTQ R2_L006 unaligned CPTAC3 d6018ec3-38ff-4147-9cac-d0a9fea156af 4be6aa54f97646399eaf46d8934344c5 { 'aliquot_tag': 'ALQ_d702057a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01313.RNA-Seq.genomic.A.hg38 C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 d4d369f1-ed9d-4429-8cc4-58939d240436.rna_seq.genomic.gdc_realn.bam 7524182379 BAM genomic harmonized CPTAC3 f90df0c9-b7fc-48cd-9fee-5219d4c1a7f2 e40a34778bc048fadf2fae1594b42b78 { 'aliquot_tag': 'ALQ_ea622cca', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01313.RNA-Seq.genomic.T.hg38 C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 ebefe30b-f161-414b-8fe4-02736ec93649.rna_seq.genomic.gdc_realn.bam 6936812821 BAM genomic harmonized CPTAC3 ea0c3adb-0bdd-46de-b8af-cc34683a7150 7387ffddc74528b245aecea46dfa4100 { 'aliquot_tag': 'ALQ_d702057a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01313.RNA-Seq.R1_L002.A C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTTCC_S5_L002_R1_001.fastq.gz 3913365668 FASTQ R1_L002 unaligned CPTAC3 352bd1f3-e4b4-4883-8b16-2bca8faa3175 2ed8f09a9f96c899f50f9a71ac572b7e { 'aliquot_tag': 'ALQ_ea622cca', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01313.RNA-Seq.R1_L006.T C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGAAA_S16_L006_R1_001.fastq.gz 3527851467 FASTQ R1_L006 unaligned CPTAC3 0138a8d4-1eda-45fc-9516-eee215e5cebc 678860e5bf2251e7dd80f8285266feb3 { 'aliquot_tag': 'ALQ_d702057a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01313.RNA-Seq.R2_L002.A C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 171205_UNC32-K00270_0069_BHN2HGBBXX_AGTTCC_S5_L002_R2_001.fastq.gz 4071605231 FASTQ R2_L002 unaligned CPTAC3 c617733c-0b14-473b-a21d-fd0849bac86e 5203e7fc8ce62bc54478b6edb4ca477b { 'aliquot_tag': 'ALQ_ea622cca', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01313.RNA-Seq.R2_L006.T C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGAAA_S16_L006_R2_001.fastq.gz 3424569482 FASTQ R2_L006 unaligned CPTAC3 d6018ec3-38ff-4147-9cac-d0a9fea156af 4be6aa54f97646399eaf46d8934344c5 { 'aliquot_tag': 'ALQ_d702057a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-01313.RNA-Seq.transcriptome.A.hg38 C3L-01313 CCRCC RNA-Seq tissue_normal CPT0086830006 d4d369f1-ed9d-4429-8cc4-58939d240436.rna_seq.transcriptome.gdc_realn.bam 9340158325 BAM transcriptome harmonized CPTAC3 50984d04-0e92-4100-9bac-ba5a765e0869 0ce81d51a9a5715c0063737f9531e6aa { 'aliquot_tag': 'ALQ_ea622cca', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01313.RNA-Seq.transcriptome.T.hg38 C3L-01313 CCRCC RNA-Seq tumor CPT0086820006 ebefe30b-f161-414b-8fe4-02736ec93649.rna_seq.transcriptome.gdc_realn.bam 8374258014 BAM transcriptome harmonized CPTAC3 5db23ec9-f508-4820-982d-a2e8be25acf3 6c33f92a46732421f9f3422111a5e9f4 { 'aliquot_tag': 'ALQ_d702057a', 'gdc_sample_type': 'Primary Tumor' } C3L-01313.WGS.A C3L-01313 CCRCC WGS tissue_normal CPT0086830009 CPT0086830009.WholeGenome.RP-1303.bam 59317828295 BAM aligned CPTAC3 93f2881a-6349-43e7-b3c2-1d931dec29ca 08d919ad65982f8c564d0b9ddb072ddf { 'aliquot_tag': 'ALQ_7add315b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -6832,8 +7443,8 @@ C3L-01327.miRNA-Seq.T C3L-01327 GBM miRNA-Seq tumor CPT0064890006 190813_UNC32-K C3L-01327.miRNA-Seq.T.hg38 C3L-01327 GBM miRNA-Seq tumor CPT0064890006 914c4fc7-6eea-4447-bf89-935a8413127f_mirnaseq_gdc_realn.bam 411930135 BAM harmonized CPTAC3 4557d3fc-d131-4113-95cb-b05b678df87c d02957605e56158d865b69df51bcc7ac { 'aliquot_tag': 'ALQ_22c73770', 'gdc_sample_type': 'Primary Tumor' } C3L-01327.RNA-Seq.chimeric.T.hg38 C3L-01327 GBM RNA-Seq tumor CPT0064890006 545ce631-7b55-4c89-9417-148763c4ab0c.rna_seq.chimeric.gdc_realn.bam 55092457 BAM chimeric harmonized CPTAC3 3e76f536-6c0e-424d-a2a8-db17f680ee49 0267da1562730ba06a41cb6221efaf0e { 'aliquot_tag': 'ALQ_22c73770', 'gdc_sample_type': 'Primary Tumor' } C3L-01327.RNA-Seq.genomic.T.hg38 C3L-01327 GBM RNA-Seq tumor CPT0064890006 545ce631-7b55-4c89-9417-148763c4ab0c.rna_seq.genomic.gdc_realn.bam 6675174478 BAM genomic harmonized CPTAC3 f733a605-f6bb-46c1-b8c6-8ede10e46469 5437ee79dce72a4389a87555945a5857 { 'aliquot_tag': 'ALQ_22c73770', 'gdc_sample_type': 'Primary Tumor' } -C3L-01327.RNA-Seq.R1_L004.T C3L-01327 GBM RNA-Seq tumor CPT0064890006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3051942729 FASTQ R1_L004 unaligned CPTAC3 2a69a48b-eeeb-473c-9ff9-9ea09cb43090 0226c8a27d40d95208f055973a0f713d { 'aliquot_tag': 'ALQ_22c73770', 'gdc_sample_type': 'Primary Tumor' } -C3L-01327.RNA-Seq.R2_L004.T C3L-01327 GBM RNA-Seq tumor CPT0064890006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 3385695454 FASTQ R2_L004 unaligned CPTAC3 00d4635f-27ee-4351-a39c-230ebb366fd7 c1a9850e5714332b6cc981d4bb245585 { 'aliquot_tag': 'ALQ_22c73770', 'gdc_sample_type': 'Primary Tumor' } +C3L-01327.RNA-Seq.R1_L004.T C3L-01327 GBM RNA-Seq tumor CPT0064890006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3051942729 FASTQ R1_L004 unaligned CPTAC3 2a69a48b-eeeb-473c-9ff9-9ea09cb43090 0226c8a27d40d95208f055973a0f713d { 'aliquot_tag': 'ALQ_22c73770', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01327.RNA-Seq.R2_L004.T C3L-01327 GBM RNA-Seq tumor CPT0064890006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 3385695454 FASTQ R2_L004 unaligned CPTAC3 00d4635f-27ee-4351-a39c-230ebb366fd7 c1a9850e5714332b6cc981d4bb245585 { 'aliquot_tag': 'ALQ_22c73770', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01327.RNA-Seq.transcriptome.T.hg38 C3L-01327 GBM RNA-Seq tumor CPT0064890006 545ce631-7b55-4c89-9417-148763c4ab0c.rna_seq.transcriptome.gdc_realn.bam 7317150938 BAM transcriptome harmonized CPTAC3 82f3738c-617d-4c62-990c-c9743bcc5050 5c6f769caf7578b29ac2d2f956ef4227 { 'aliquot_tag': 'ALQ_22c73770', 'gdc_sample_type': 'Primary Tumor' } C3L-01327.WGS.N C3L-01327 GBM WGS blood_normal CPT0066690002 CPT0066690002.WholeGenome.RP-1303.bam 82382827555 BAM aligned CPTAC3 d8c9db7c-5839-4683-9f24-281ca8833824 c33bc934a9e94ac32c05aac02e667c40 { 'aliquot_tag': 'ALQ_883f8330', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01327.WGS.N.hg38 C3L-01327 GBM WGS blood_normal CPT0066690002 d0dc9d75-a40c-4673-af55-912e85b82593_gdc_realn.bam 125494357631 BAM harmonized CPTAC3 dbe76591-1276-49d4-a0d5-22878b05c8f9 0e329b7f4aecdb45661fa05760ce5467 { 'aliquot_tag': 'ALQ_883f8330', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6853,12 +7464,12 @@ C3L-01328.miRNA-Seq.T C3L-01328 PDA miRNA-Seq tumor CPT0083270009 181012_UNC32-K C3L-01328.miRNA-Seq.T.hg38 C3L-01328 PDA miRNA-Seq tumor CPT0083270009 0dd6d435-ec09-4873-890a-8c250eee5961_mirnaseq_gdc_realn.bam 224339939 BAM harmonized CPTAC3 776ade15-0a7d-47ad-a266-abe67d006f65 90e6d5df791a5629db4edd551c15dba7 { 'aliquot_tag': 'ALQ_7cfe9b5a', 'gdc_sample_type': 'Primary Tumor' } C3L-01328.RNA-Seq.chimeric.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 03d012ac-20b7-4b78-aba1-d8eb765a4f0e.rna_seq.chimeric.gdc_realn.bam 45003326 BAM chimeric harmonized CPTAC3 45b4fd42-dc20-4e2b-b452-cc7fe8f4fcda deeddc0692c04349475fde14b8e97f48 { 'aliquot_tag': 'ALQ_c3ce253b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01328.RNA-Seq.chimeric.T.hg38 C3L-01328 PDA RNA-Seq tumor CPT0083270009 ba09b042-bef0-4abd-a17c-b076db7b4938.rna_seq.chimeric.gdc_realn.bam 48393175 BAM chimeric harmonized CPTAC3 fef0110f-d6af-482d-8640-ddba28f504fb 165c14d782fa82baf49e8fc304c12bd4 { 'aliquot_tag': 'ALQ_7cfe9b5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01328.RNA-Seq.genomic.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 03d012ac-20b7-4b78-aba1-d8eb765a4f0e.rna_seq.genomic.gdc_realn.bam 11355970334 BAM genomic harmonized CPTAC3 3598897d-e7e2-4b90-b144-69b63e07fd63 72b9a5a1fed8b9a3172f9e9203172dde { 'aliquot_tag': 'ALQ_c3ce253b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01328.RNA-Seq.genomic.T.hg38 C3L-01328 PDA RNA-Seq tumor CPT0083270009 ba09b042-bef0-4abd-a17c-b076db7b4938.rna_seq.genomic.gdc_realn.bam 9452358062 BAM genomic harmonized CPTAC3 a8fa2440-0e6e-4866-9578-f032fa0360e3 72ed694485df0f8a461397ee529b6244 { 'aliquot_tag': 'ALQ_7cfe9b5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01328.RNA-Seq.R1_L002.T C3L-01328 PDA RNA-Seq tumor CPT0083270009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 3929468307 FASTQ R1_L002 unaligned CPTAC3 50af033e-efd9-4223-9105-cec0998a7665 d489146b34a7bb64803dd33af8c197b4 { 'aliquot_tag': 'ALQ_7cfe9b5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01328.RNA-Seq.R1_L003.A C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R1_001.fastq.gz 4773594378 FASTQ R1_L003 unaligned CPTAC3 140c920a-1034-4bd0-b3ae-cda59eaf729d 3d5e5e2368c9c968e6e7cbec398b1757 { 'aliquot_tag': 'ALQ_c3ce253b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01328.RNA-Seq.R2_L002.T C3L-01328 PDA RNA-Seq tumor CPT0083270009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4292836821 FASTQ R2_L002 unaligned CPTAC3 f79a8648-7ffd-4985-9510-96f6275e7ba8 0006119e9f3531c97f6c70f3ba2fe190 { 'aliquot_tag': 'ALQ_7cfe9b5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01328.RNA-Seq.R2_L003.A C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R2_001.fastq.gz 5326317172 FASTQ R2_L003 unaligned CPTAC3 91373e81-5d8e-4e0e-b776-da23ccc8165e 22ffceec080d1fc3630ad454238b14cc { 'aliquot_tag': 'ALQ_c3ce253b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01328.RNA-Seq.genomic.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 03d012ac-20b7-4b78-aba1-d8eb765a4f0e.rna_seq.genomic.gdc_realn.bam 11355970334 BAM genomic harmonized CPTAC3 015d71b1-0bd1-4a19-a9e6-715d3af57314 72b9a5a1fed8b9a3172f9e9203172dde { 'aliquot_tag': 'ALQ_c3ce253b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01328.RNA-Seq.genomic.T.hg38 C3L-01328 PDA RNA-Seq tumor CPT0083270009 ba09b042-bef0-4abd-a17c-b076db7b4938.rna_seq.genomic.gdc_realn.bam 9452358062 BAM genomic harmonized CPTAC3 56ea54d2-2bf3-44ed-8650-8c269098d1e4 72ed694485df0f8a461397ee529b6244 { 'aliquot_tag': 'ALQ_7cfe9b5a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01328.RNA-Seq.R1_L002.T C3L-01328 PDA RNA-Seq tumor CPT0083270009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 3929468307 FASTQ R1_L002 unaligned CPTAC3 50af033e-efd9-4223-9105-cec0998a7665 d489146b34a7bb64803dd33af8c197b4 { 'aliquot_tag': 'ALQ_7cfe9b5a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01328.RNA-Seq.R1_L003.A C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R1_001.fastq.gz 4773594378 FASTQ R1_L003 unaligned CPTAC3 140c920a-1034-4bd0-b3ae-cda59eaf729d 3d5e5e2368c9c968e6e7cbec398b1757 { 'aliquot_tag': 'ALQ_c3ce253b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-01328.RNA-Seq.R2_L002.T C3L-01328 PDA RNA-Seq tumor CPT0083270009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4292836821 FASTQ R2_L002 unaligned CPTAC3 f79a8648-7ffd-4985-9510-96f6275e7ba8 0006119e9f3531c97f6c70f3ba2fe190 { 'aliquot_tag': 'ALQ_7cfe9b5a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01328.RNA-Seq.R2_L003.A C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGATGT_S11_L003_R2_001.fastq.gz 5326317172 FASTQ R2_L003 unaligned CPTAC3 91373e81-5d8e-4e0e-b776-da23ccc8165e 22ffceec080d1fc3630ad454238b14cc { 'aliquot_tag': 'ALQ_c3ce253b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3L-01328.RNA-Seq.transcriptome.A.hg38 C3L-01328 PDA RNA-Seq tissue_normal CPT0083290009 03d012ac-20b7-4b78-aba1-d8eb765a4f0e.rna_seq.transcriptome.gdc_realn.bam 14212831115 BAM transcriptome harmonized CPTAC3 3f040ad1-8c12-488c-8822-b3f15b60624b c8d15d2376b86ff3d691a8e15973152d { 'aliquot_tag': 'ALQ_c3ce253b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01328.RNA-Seq.transcriptome.T.hg38 C3L-01328 PDA RNA-Seq tumor CPT0083270009 ba09b042-bef0-4abd-a17c-b076db7b4938.rna_seq.transcriptome.gdc_realn.bam 11075845406 BAM transcriptome harmonized CPTAC3 f9cacae2-3526-4222-a87b-55ffceb8a6f0 e714a7323c657787bb565860762a1af3 { 'aliquot_tag': 'ALQ_7cfe9b5a', 'gdc_sample_type': 'Primary Tumor' } C3L-01328.Targeted.T C3L-01328 PDA Targeted Sequencing tumor CPT0083270006_1 CPT0083270006_1.CustomSelection.RP-1303.PDO-18786.bam 5323434123 BAM aligned CPTAC3 5bfb3cd8-1ec0-4ae2-849d-4c936eeaa99e 486676aef465fcff63495c3ea8d4d442 { 'aliquot_tag': 'ALQ_1f1978f', 'gdc_sample_type': 'Primary Tumor' } @@ -6889,10 +7500,10 @@ C3L-01330.RNA-Seq.chimeric.A.hg38 C3L-01330 LUAD RNA-Seq tissue_normal CPT008342 C3L-01330.RNA-Seq.chimeric.T.hg38 C3L-01330 LUAD RNA-Seq tumor CPT0083390010 156adfcd-b9fe-466d-8476-1c8c11656de0.rna_seq.chimeric.gdc_realn.bam 51268071 BAM chimeric harmonized CPTAC3 c3e97123-df6f-46f0-a19e-602e821942e0 193aabb71744adfadb82bf5d6ec2e8b5 { 'aliquot_tag': 'ALQ_68557f7b', 'gdc_sample_type': 'Primary Tumor' } C3L-01330.RNA-Seq.genomic.A.hg38 C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 0e3a446a-4ee8-4f45-ae16-67f1a8c6a3bd.rna_seq.genomic.gdc_realn.bam 8097589480 BAM genomic harmonized CPTAC3 167e253d-3971-4b0b-8280-9750d8429ca0 362fd09229cd64a815e50b38f64cf44b { 'aliquot_tag': 'ALQ_f2f8eaa6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01330.RNA-Seq.genomic.T.hg38 C3L-01330 LUAD RNA-Seq tumor CPT0083390010 156adfcd-b9fe-466d-8476-1c8c11656de0.rna_seq.genomic.gdc_realn.bam 7597482780 BAM genomic harmonized CPTAC3 6a70e252-3c2e-4a86-af4a-24347b7d96ff dba4970b248a9ffa0746ec35fbbe4fca { 'aliquot_tag': 'ALQ_68557f7b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01330.RNA-Seq.R1_L002.T C3L-01330 LUAD RNA-Seq tumor CPT0083390010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 3486312091 FASTQ R1_L002 unaligned CPTAC3 d6b0d5a1-ca0a-40f6-8339-8652aab7a234 9d74e88f66c1945a3598a0d599e0f8a2 { 'aliquot_tag': 'ALQ_68557f7b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01330.RNA-Seq.R1_L005.A C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 171215_UNC32-K00270_0073_BHN3NFBBXX_CAGATC_S19_L005_R1_001.fastq.gz 3906878362 FASTQ R1_L005 unaligned CPTAC3 2253d6b5-fa0e-423d-91f6-91a89072f35e 5c9527c46df65690ba274dff6d2d04cd { 'aliquot_tag': 'ALQ_f2f8eaa6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01330.RNA-Seq.R2_L002.T C3L-01330 LUAD RNA-Seq tumor CPT0083390010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 3818273723 FASTQ R2_L002 unaligned CPTAC3 15dc97a0-f911-4f6d-ad2d-97be1e037095 7b23e63fc3b0ec35faffe123d9dd189a { 'aliquot_tag': 'ALQ_68557f7b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01330.RNA-Seq.R2_L005.A C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 171215_UNC32-K00270_0073_BHN3NFBBXX_CAGATC_S19_L005_R2_001.fastq.gz 4345483539 FASTQ R2_L005 unaligned CPTAC3 b104ca9a-741d-4e71-b3bc-9a26a9cd6db1 7a4df832ce0d016c9fad40f19d41f4a8 { 'aliquot_tag': 'ALQ_f2f8eaa6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01330.RNA-Seq.R1_L002.T C3L-01330 LUAD RNA-Seq tumor CPT0083390010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 3486312091 FASTQ R1_L002 unaligned CPTAC3 d6b0d5a1-ca0a-40f6-8339-8652aab7a234 9d74e88f66c1945a3598a0d599e0f8a2 { 'aliquot_tag': 'ALQ_68557f7b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01330.RNA-Seq.R1_L005.A C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 171215_UNC32-K00270_0073_BHN3NFBBXX_CAGATC_S19_L005_R1_001.fastq.gz 3906878362 FASTQ R1_L005 unaligned CPTAC3 2253d6b5-fa0e-423d-91f6-91a89072f35e 5c9527c46df65690ba274dff6d2d04cd { 'aliquot_tag': 'ALQ_f2f8eaa6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-01330.RNA-Seq.R2_L002.T C3L-01330 LUAD RNA-Seq tumor CPT0083390010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 3818273723 FASTQ R2_L002 unaligned CPTAC3 15dc97a0-f911-4f6d-ad2d-97be1e037095 7b23e63fc3b0ec35faffe123d9dd189a { 'aliquot_tag': 'ALQ_68557f7b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01330.RNA-Seq.R2_L005.A C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 171215_UNC32-K00270_0073_BHN3NFBBXX_CAGATC_S19_L005_R2_001.fastq.gz 4345483539 FASTQ R2_L005 unaligned CPTAC3 b104ca9a-741d-4e71-b3bc-9a26a9cd6db1 7a4df832ce0d016c9fad40f19d41f4a8 { 'aliquot_tag': 'ALQ_f2f8eaa6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-01330.RNA-Seq.transcriptome.A.hg38 C3L-01330 LUAD RNA-Seq tissue_normal CPT0083420006 0e3a446a-4ee8-4f45-ae16-67f1a8c6a3bd.rna_seq.transcriptome.gdc_realn.bam 9274754717 BAM transcriptome harmonized CPTAC3 9491022f-4097-478f-b029-0c26078e61b9 351d3380f1e72ef7d73a3ee1c11e5975 { 'aliquot_tag': 'ALQ_f2f8eaa6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01330.RNA-Seq.transcriptome.T.hg38 C3L-01330 LUAD RNA-Seq tumor CPT0083390010 156adfcd-b9fe-466d-8476-1c8c11656de0.rna_seq.transcriptome.gdc_realn.bam 8622090820 BAM transcriptome harmonized CPTAC3 6426e075-6df1-473d-9478-dba0b016c769 3f41d46e5126bdbd8be615f428d5ad95 { 'aliquot_tag': 'ALQ_68557f7b', 'gdc_sample_type': 'Primary Tumor' } C3L-01330.WGS.A C3L-01330 LUAD WGS tissue_normal CPT0083420009 CPT0083420009.WholeGenome.RP-1303.bam 53911713193 BAM aligned CPTAC3 a3c71cce-a36b-4a68-8f44-d6c96d1a7e6d 76a5cc7bcabf49b4b50d5ac768f066d8 { 'aliquot_tag': 'ALQ_6247f737', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -6913,8 +7524,8 @@ C3L-01352.miRNA-Seq.T C3L-01352 CCRCC miRNA-Seq tumor CPT0071150007 181012_UNC32 C3L-01352.miRNA-Seq.T.hg38 C3L-01352 CCRCC miRNA-Seq tumor CPT0071150007 35f853c0-d953-4408-814c-72c5ef86ff9b_mirnaseq_gdc_realn.bam 300657639 BAM harmonized CPTAC3 9208dc62-31ea-4b18-95ba-74cd33acd407 87fe5d1140bd54de7fbefbbe5e3f7ddc { 'aliquot_tag': 'ALQ_29ad9416', 'gdc_sample_type': 'Primary Tumor' } C3L-01352.RNA-Seq.chimeric.T.hg38 C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 6d0bcf3c-1740-4527-8e15-b0c9c66158aa.rna_seq.chimeric.gdc_realn.bam 94465062 BAM chimeric harmonized CPTAC3 948b8676-dc41-42b0-9f89-a36897d45ee8 a25e69f8979ce44b200c4dd79bd18f0c { 'aliquot_tag': 'ALQ_29ad9416', 'gdc_sample_type': 'Primary Tumor' } C3L-01352.RNA-Seq.genomic.T.hg38 C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 6d0bcf3c-1740-4527-8e15-b0c9c66158aa.rna_seq.genomic.gdc_realn.bam 7861795197 BAM genomic harmonized CPTAC3 e031a800-6f71-460a-afa1-860ddc304a3b d6373c4e1c58d9bb3daccd97a6cdab3e { 'aliquot_tag': 'ALQ_29ad9416', 'gdc_sample_type': 'Primary Tumor' } -C3L-01352.RNA-Seq.R1_L007.T C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTCAA_S21_L007_R1_001.fastq.gz 4028105922 FASTQ R1_L007 unaligned CPTAC3 22ee7030-3274-461a-941b-04ab673308f8 d882364856508783318d3b707e693b30 { 'aliquot_tag': 'ALQ_29ad9416', 'gdc_sample_type': 'Primary Tumor' } -C3L-01352.RNA-Seq.R2_L007.T C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTCAA_S21_L007_R2_001.fastq.gz 4308194705 FASTQ R2_L007 unaligned CPTAC3 8d9def8e-edcc-46fe-ad1a-246d5e8d6e82 8ea359967697730c23a9d1299897159a { 'aliquot_tag': 'ALQ_29ad9416', 'gdc_sample_type': 'Primary Tumor' } +C3L-01352.RNA-Seq.R1_L007.T C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTCAA_S21_L007_R1_001.fastq.gz 4028105922 FASTQ R1_L007 unaligned CPTAC3 22ee7030-3274-461a-941b-04ab673308f8 d882364856508783318d3b707e693b30 { 'aliquot_tag': 'ALQ_29ad9416', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01352.RNA-Seq.R2_L007.T C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTCAA_S21_L007_R2_001.fastq.gz 4308194705 FASTQ R2_L007 unaligned CPTAC3 8d9def8e-edcc-46fe-ad1a-246d5e8d6e82 8ea359967697730c23a9d1299897159a { 'aliquot_tag': 'ALQ_29ad9416', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-01352.RNA-Seq.transcriptome.T.hg38 C3L-01352 CCRCC RNA-Seq tumor CPT0071150007 6d0bcf3c-1740-4527-8e15-b0c9c66158aa.rna_seq.transcriptome.gdc_realn.bam 11753340601 BAM transcriptome harmonized CPTAC3 9b3da46e-7754-4e3a-9d05-64739bc6b29c 8e6fa6bd261427e7def78007612fde4f { 'aliquot_tag': 'ALQ_29ad9416', 'gdc_sample_type': 'Primary Tumor' } C3L-01352.WGS.N C3L-01352 CCRCC WGS blood_normal CPT0071980002 CPT0071980002.WholeGenome.RP-1303.bam 61487552634 BAM aligned CPTAC3 8b3feb25-5077-4529-81ef-f1ea352c4c1d 5b8937b72c49da7a07a4a6ec5546844a { 'aliquot_tag': 'ALQ_4d042645', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01352.WGS.N.hg38 C3L-01352 CCRCC WGS blood_normal CPT0071980002 3268319a-ab4b-47bb-ad7f-bb2aa22d92c5_gdc_realn.bam 93021309930 BAM harmonized CPTAC3 e1794f91-7fab-4a26-a71f-500a69109dd8 74eb8801cacac0117494bd479096ea8a { 'aliquot_tag': 'ALQ_4d042645', 'gdc_sample_type': 'Blood Derived Normal' } @@ -6928,13 +7539,16 @@ C3L-01355.MethArray.Green.T C3L-01355 UCEC Methylation Array tumor CPT0083580006 C3L-01355.MethArray.Red.T C3L-01355 UCEC Methylation Array tumor CPT0083580006 202184900110_R08C01_Red.idat 13676256 IDAT Red NA CPTAC3 4442ddbb-827e-40e3-ae49-4c482a5b8469 b51ab62e6d3cad26d1e007f1a152e319 { 'aliquot_tag': 'ALQ_731421a2', 'gdc_sample_type': 'Primary Tumor' } C3L-01355.miRNA-Seq.T C3L-01355 UCEC miRNA-Seq tumor CPT0083580013 181108_UNC31-K00269_0163_BH23TVBBXY_GGCTAC_S11_L008_R1_001.unaln.bam 178699422 BAM unaligned CPTAC3 c8ee366b-11de-42f5-904b-b9bbb94a9aaf ddb3d51a56cf18ddb3805d7f3b8dde25 { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor' } C3L-01355.miRNA-Seq.T.hg38 C3L-01355 UCEC miRNA-Seq tumor CPT0083580013 7085c267-55fe-4e9f-8a05-b54de98594e6_mirnaseq_gdc_realn.bam 195925602 BAM harmonized CPTAC3 83e075a3-fc5f-4bf1-a719-74edeea36539 ef85b229d81fe1aeb39371d4f4cbd8f0 { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01355.RNA-Seq.chimeric.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 f490e543-6e2d-4526-b996-a22441464a8b.rna_seq.chimeric.gdc_realn.bam 36100207 BAM chimeric harmonized CPTAC3 004576ce-c142-4624-8639-4b2e6e7bd576 69cd2ce3c2ee549696fe462e40fd6f0c { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01355.RNA-Seq.genomic.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 f490e543-6e2d-4526-b996-a22441464a8b.rna_seq.genomic.gdc_realn.bam 7740854636 BAM genomic harmonized CPTAC3 aac17050-9cfb-470b-8e71-588e6e8e0543 165379a2b16511a72476f6fa5fce79f8 { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01355.RNA-Seq.R1_L007.T C3L-01355 UCEC RNA-Seq tumor CPT0083580013 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTTCC_S17_L007_R1_001.fastq.gz 4204285748 FASTQ R1_L007 unaligned CPTAC3 864ac672-b31c-41c7-a472-f6ca7977e107 923a7e9f350cc83d472ba8accf9ae0eb { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01355.RNA-Seq.R1_.T C3L-01355 UCEC RNA-Seq tumor CPT0083640001 20210723_P2_E8_WB7988-plate2_S56_R1_001.fastq.gz 2525735226 FASTQ R1_ unaligned CPTAC3 acd51a1a-6e7b-49ef-ac8b-80c28a6f3822 2efb6b4eb4ece9b9b05f5b1dd79b6c45 { 'aliquot_tag': 'ALQ_ae142bae', 'gdc_sample_type': 'Primary Tumor' } -C3L-01355.RNA-Seq.R2_L007.T C3L-01355 UCEC RNA-Seq tumor CPT0083580013 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTTCC_S17_L007_R2_001.fastq.gz 4378833707 FASTQ R2_L007 unaligned CPTAC3 aa9b3c1e-498b-4e3e-8bb3-1242ba69dac3 1e853117bc13d0518aa7bf8e14d8bfaf { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor' } -C3L-01355.RNA-Seq.R2_.T C3L-01355 UCEC RNA-Seq tumor CPT0083640001 20210723_P2_E8_WB7988-plate2_S56_R2_001.fastq.gz 2582486984 FASTQ R2_ unaligned CPTAC3 11d10042-d46f-4f41-a373-ff51eed11d6a e5195587823a70b3e0a90c061158173c { 'aliquot_tag': 'ALQ_ae142bae', 'gdc_sample_type': 'Primary Tumor' } -C3L-01355.RNA-Seq.transcriptome.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 f490e543-6e2d-4526-b996-a22441464a8b.rna_seq.transcriptome.gdc_realn.bam 9572140891 BAM transcriptome harmonized CPTAC3 e5217a4b-b12a-4f85-af0a-8c5f2ab48b15 72c08863eca48a4c22f8626ea1ab8f92 { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01355.RNA-Seq.chimeric.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 bc7800fb-a548-4e92-863d-be3c0c07dddf.rna_seq.chimeric.gdc_realn.bam 36090080 BAM chimeric harmonized CPTAC3 25b0264d-607a-4bd9-91b0-506015b2886d 74bae35b808b30d5fb44c026f7fc3369 { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01355.RNA-Seq.chimeric.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083640001 ffc973c5-5ec7-42d6-84a0-be067d93098f.rna_seq.chimeric.gdc_realn.bam 81495737 BAM chimeric harmonized CPTAC3 61505e17-4e3a-460b-9092-4c597ad72e31 192eccf81564230e55152d4a1e85c124 { 'aliquot_tag': 'ALQ_ae142bae', 'gdc_sample_type': 'Primary Tumor' } +C3L-01355.RNA-Seq.genomic.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 bc7800fb-a548-4e92-863d-be3c0c07dddf.rna_seq.genomic.gdc_realn.bam 7742458443 BAM genomic harmonized CPTAC3 5d1447a6-ebd3-4546-a05c-18e751ba6d05 e09ddfb88872f3fc0663f1631286507d { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01355.RNA-Seq.genomic.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083640001 ffc973c5-5ec7-42d6-84a0-be067d93098f.rna_seq.genomic.gdc_realn.bam 4437674831 BAM genomic harmonized CPTAC3 fd5f4068-db5e-4a8b-aef5-1a9c3637e4be eb274a60c0f745d50b9d9ebbfcb8061e { 'aliquot_tag': 'ALQ_ae142bae', 'gdc_sample_type': 'Primary Tumor' } +C3L-01355.RNA-Seq.R1_L007.T C3L-01355 UCEC RNA-Seq tumor CPT0083580013 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTTCC_S17_L007_R1_001.fastq.gz 4204285748 FASTQ R1_L007 unaligned CPTAC3 864ac672-b31c-41c7-a472-f6ca7977e107 923a7e9f350cc83d472ba8accf9ae0eb { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01355.RNA-Seq.R2_L007.T C3L-01355 UCEC RNA-Seq tumor CPT0083580013 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTTCC_S17_L007_R2_001.fastq.gz 4378833707 FASTQ R2_L007 unaligned CPTAC3 aa9b3c1e-498b-4e3e-8bb3-1242ba69dac3 1e853117bc13d0518aa7bf8e14d8bfaf { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-01355.RNA-Seq.T C3L-01355 UCEC RNA-Seq tumor CPT0083640001 20210723_P2_E8_WB7988-plate2_S56_R1_001.fastq.gz 2525735226 FASTQ unaligned CPTAC3 acd51a1a-6e7b-49ef-ac8b-80c28a6f3822 2efb6b4eb4ece9b9b05f5b1dd79b6c45 +C3L-01355.RNA-Seq.T C3L-01355 UCEC RNA-Seq tumor CPT0083640001 20210723_P2_E8_WB7988-plate2_S56_R2_001.fastq.gz 2582486984 FASTQ unaligned CPTAC3 11d10042-d46f-4f41-a373-ff51eed11d6a e5195587823a70b3e0a90c061158173c +C3L-01355.RNA-Seq.transcriptome.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083580013 bc7800fb-a548-4e92-863d-be3c0c07dddf.rna_seq.transcriptome.gdc_realn.bam 10997884589 BAM transcriptome harmonized CPTAC3 d93e1d6e-8e28-41a6-b3da-37b5990af0a3 5deb9fbda416e39c4b6b935a7a401d66 { 'aliquot_tag': 'ALQ_1a65e46c', 'gdc_sample_type': 'Primary Tumor' } +C3L-01355.RNA-Seq.transcriptome.T.hg38 C3L-01355 UCEC RNA-Seq tumor CPT0083640001 ffc973c5-5ec7-42d6-84a0-be067d93098f.rna_seq.transcriptome.gdc_realn.bam 1809595174 BAM transcriptome harmonized CPTAC3 378645e2-8fc0-4c8b-97fc-a3976bbb0484 1796d079ccac41edcab7ef6198aeaabb { 'aliquot_tag': 'ALQ_ae142bae', 'gdc_sample_type': 'Primary Tumor' } C3L-01355.WGS.N C3L-01355 UCEC WGS blood_normal CPT0081810002 CPT0081810002.WholeGenome.RP-1303.bam 72208884210 BAM aligned CPTAC3 a8a8600a-34d9-4693-865a-6ae8957ccbab 1110ae6806d1c7d6436864fc1a0d07c8 { 'aliquot_tag': 'ALQ_5268853d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01355.WGS.N.hg38 C3L-01355 UCEC WGS blood_normal CPT0081810002 38f93d50-f23b-4b2c-9add-b7a8b225357b_gdc_realn.bam 107263824204 BAM harmonized CPTAC3 c683c8b1-6683-46a0-b7a3-43c153a8ef5c b161a8c374d72975ca99366da3637c81 { 'aliquot_tag': 'ALQ_5268853d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01355.WGS.T C3L-01355 UCEC WGS tumor CPT0083580006 CPT0083580006.WholeGenome.RP-1303.bam 64473052121 BAM aligned CPTAC3 89fdecb0-51f2-45c5-bade-23f61f62b677 7f0fca1a7f0b0027344af085905b8658 { 'aliquot_tag': 'ALQ_731421a2', 'gdc_sample_type': 'Primary Tumor' } @@ -6946,29 +7560,54 @@ C3L-01355.WXS.T.hg38 C3L-01355 UCEC WXS tumor CPT0083580006 b11dd0cb-f42c-4c2e-8 C3L-01425.MethArray.Green.Tbm C3L-01425 AML Methylation Array tumor_bone_marrow CPT0274230002 205555380130_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fc129fa4-defc-41d9-9f13-baf89e165ebb 37482e01e07e920ff5c9121d031a4167 { 'aliquot_tag': 'ALQ_2cdde0b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01425.MethArray.Red.Tbm C3L-01425 AML Methylation Array tumor_bone_marrow CPT0274230002 205555380130_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 01a1a579-eae0-45d8-8a48-2db566a227b0 f8e81688a7346e00c3f4c5ddbef346a8 { 'aliquot_tag': 'ALQ_2cdde0b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01425.miRNA-Seq.Tbm C3L-01425 AML miRNA-Seq tumor_bone_marrow CPT0274240002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATCACG_S5_L001_R1_001.unaln.bam 192936481 BAM unaligned CPTAC3 9358392d-dfaf-40ef-b45c-94157adec7b7 8e817df7963ed0cbc03c24fe97f5ff99 { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01425.RNA-Seq.chimeric.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 69e51d95-69a9-4d6e-a1d8-b93dd0d1e65c.rna_seq.chimeric.gdc_realn.bam 51560109 BAM chimeric harmonized CPTAC3 9afc6bee-2e7b-4911-b154-50c052f9c1bc 01cf0f01c64fb1db6ad8498a2c9e067d { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01425.RNA-Seq.genomic.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 69e51d95-69a9-4d6e-a1d8-b93dd0d1e65c.rna_seq.genomic.gdc_realn.bam 8281507777 BAM genomic harmonized CPTAC3 82ff5495-cdf4-4f5d-b5c8-4838b9e5db03 608b202ef96255affff735ce1a702579 { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01425.RNA-Seq.R1_L008.Tbm C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 210318_UNC32-K00270_0277_AHKNTVBBXY_ATATCTCG-ATCTTAGT_S62_L008_R1_001.fastq.gz 3746499264 FASTQ R1_L008 unaligned CPTAC3 4d5c2e00-b36f-4fa5-8b86-888dce250da2 79a7c28e97103dbefa149b94c968bef7 { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01425.RNA-Seq.R2_L008.Tbm C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 210318_UNC32-K00270_0277_AHKNTVBBXY_ATATCTCG-ATCTTAGT_S62_L008_R2_001.fastq.gz 4281876354 FASTQ R2_L008 unaligned CPTAC3 e7d86046-cfb4-4b3b-b891-c28b1571226e ae2907da366c10ffeadf70ff7faf10d4 { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01425.RNA-Seq.transcriptome.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 69e51d95-69a9-4d6e-a1d8-b93dd0d1e65c.rna_seq.transcriptome.gdc_realn.bam 6714454143 BAM transcriptome harmonized CPTAC3 57c75a0e-1c44-4210-9516-9c1e00725071 38cd6e0ed996b69542e53c0b87720761 { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01425.miRNA-Seq.Tbm.hg38 C3L-01425 AML miRNA-Seq tumor_bone_marrow CPT0274240002 fb218c91-d107-49bb-ad62-a86b30f3517a_mirnaseq_gdc_realn.bam 212839610 BAM harmonized CPTAC3 0633e282-be72-4001-a15e-d59db46233b0 e95fc10c11508834b14b61ef22bf1b97 { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01425.RNA-Seq.chimeric.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 dbc072f9-0e54-4387-a8c9-0e4a858d05e3.rna_seq.chimeric.gdc_realn.bam 51555637 BAM chimeric harmonized CPTAC3 8f626e89-02bc-46c5-bacf-fd5febe43938 8d092dd8c546404eb3203d79add93125 { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01425.RNA-Seq.genomic.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 dbc072f9-0e54-4387-a8c9-0e4a858d05e3.rna_seq.genomic.gdc_realn.bam 8290250700 BAM genomic harmonized CPTAC3 35362d20-50a1-41df-8d01-2d6f7c8bcb93 b4b3ad13ecf52b4495870e72ad7a845c { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01425.RNA-Seq.R1_L008.Tbm C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 210318_UNC32-K00270_0277_AHKNTVBBXY_ATATCTCG-ATCTTAGT_S62_L008_R1_001.fastq.gz 3746499264 FASTQ R1_L008 unaligned CPTAC3 4d5c2e00-b36f-4fa5-8b86-888dce250da2 79a7c28e97103dbefa149b94c968bef7 { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-01425.RNA-Seq.R2_L008.Tbm C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 210318_UNC32-K00270_0277_AHKNTVBBXY_ATATCTCG-ATCTTAGT_S62_L008_R2_001.fastq.gz 4281876354 FASTQ R2_L008 unaligned CPTAC3 e7d86046-cfb4-4b3b-b891-c28b1571226e ae2907da366c10ffeadf70ff7faf10d4 { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-01425.RNA-Seq.transcriptome.Tbm.hg38 C3L-01425 AML RNA-Seq tumor_bone_marrow CPT0274240002 dbc072f9-0e54-4387-a8c9-0e4a858d05e3.rna_seq.transcriptome.gdc_realn.bam 7699137357 BAM transcriptome harmonized CPTAC3 14f8c8bc-e5de-4e34-ad81-8ee90d981a32 a13cb5a974dfe4f009e6309835f10dfe { 'aliquot_tag': 'ALQ_9efd3ca6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01425.WGS.Nbc C3L-01425 AML WGS buccal_normal CPT0274300002 CPT0274300002.WholeGenome.RP-2158.bam 62074873853 BAM aligned CPTAC3 d946a253-44d8-4c7b-bd21-0dc5960c0ec1 ef1735d4e54e9b849b72b0f205543fea { 'aliquot_tag': 'ALQ_a02149c3', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01425.WGS.Nbc.hg38 C3L-01425 AML WGS buccal_normal CPT0274300002 09ba7069-2fd4-4f8b-9d4b-d9d8f0618168_wgs_gdc_realn.bam 210091772785 BAM harmonized CPTAC3 3289b16b-0383-4ece-914c-5ae5fa903955 e949c9dd89b7c0c5fbbffcd96dfcda39 { 'aliquot_tag': 'ALQ_a02149c3', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01425.WGS.Tbm C3L-01425 AML WGS tumor_bone_marrow CPT0274230002 CPT0274230002.WholeGenome.RP-2158.bam 50386399339 BAM aligned CPTAC3 a1185370-8fe3-49e6-a4d3-358a846227a2 193be1b828217a4b61f3f226d733847a { 'aliquot_tag': 'ALQ_2cdde0b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01425.WGS.Tbm.hg38 C3L-01425 AML WGS tumor_bone_marrow CPT0274230002 e92b5f2a-b7bb-4111-bfa5-77d2fa1e1516_wgs_gdc_realn.bam 152059527928 BAM harmonized CPTAC3 3634e8ee-419e-422b-a492-b63f07b3840a 7836e6dad357bba9d57888eaf5a1535d { 'aliquot_tag': 'ALQ_2cdde0b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01425.WXS.Nbc C3L-01425 AML WXS buccal_normal CPT0274300002 CPT0274300002.WholeExome.RP-1303.bam 40847720232 BAM aligned CPTAC3 4993a91a-acfc-496b-b990-fa96274c1c66 8a2fcd56841da0c64adb88fa29bb8fff { 'aliquot_tag': 'ALQ_a02149c3', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01425.WXS.Nbc.hg38 C3L-01425 AML WXS buccal_normal CPT0274300002 09ba7069-2fd4-4f8b-9d4b-d9d8f0618168_wxs_gdc_realn.bam 56301198713 BAM harmonized CPTAC3 0beb5388-ac5c-42d6-afc4-478ba0a192d0 18b007c281a12b6ccdb209efc2080d23 { 'aliquot_tag': 'ALQ_a02149c3', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01425.WXS.Tbm C3L-01425 AML WXS tumor_bone_marrow CPT0274230002 CPT0274230002.WholeExome.RP-1303.bam 51575026777 BAM aligned CPTAC3 1b173ed7-cf59-4cd1-8bcc-c2508f4a44ef 99ef2003503a055f8e54e48a58967fde { 'aliquot_tag': 'ALQ_2cdde0b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01425.WXS.Tbm.hg38 C3L-01425 AML WXS tumor_bone_marrow CPT0274230002 e92b5f2a-b7bb-4111-bfa5-77d2fa1e1516_wxs_gdc_realn.bam 72395346430 BAM harmonized CPTAC3 1089fe15-b965-4a52-8fbe-c43ac6fdab80 6a25d25d47f51b089424dc71cf88b04a { 'aliquot_tag': 'ALQ_2cdde0b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01426.MethArray.Green.Tpb C3L-01426 AML Methylation Array tumor_peripheral_blood CPT0284650002 205987780094_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 cf4d30f0-f95d-4e99-b079-4f9cc4ed75ce cb22d08cb8868c30b3a40926555e6fba { 'aliquot_tag': 'ALQ_e12c45ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01426.MethArray.Red.Tpb C3L-01426 AML Methylation Array tumor_peripheral_blood CPT0284650002 205987780094_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 3119403c-fc14-4ee5-a1ca-bfb840a78d5e e2b34d647f7b4ed586fbd4374ec03094 { 'aliquot_tag': 'ALQ_e12c45ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01426.miRNA-Seq.Tpb C3L-01426 AML miRNA-Seq tumor_peripheral_blood CPT0284660002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAGGCG_S5_L001_R1_001.unaln.bam 226938523 BAM unaligned CPTAC3 9e900849-381e-47ea-8126-b12952f6ebd6 ee0173e9489a88dd82f9806a03fabf2e { 'aliquot_tag': 'ALQ_a68c3f7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-01426.RNA-Seq.R1_L001.Tpb C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L001_R1_001.fastq.gz 3181868063 FASTQ R1_L001 unaligned CPTAC3 8968ac3f-af34-49ac-bda9-abfc9b0e6373 ce02dffddecb3732cd3ae4b802013210 { 'aliquot_tag': 'ALQ_a68c3f7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-01426.RNA-Seq.R2_L001.Tpb C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L001_R2_001.fastq.gz 3581567319 FASTQ R2_L001 unaligned CPTAC3 fe29e9a1-2fc3-4f7d-a588-d6a803878000 36d7c0f424e6cd19c0dbc5e2af66a0ba { 'aliquot_tag': 'ALQ_a68c3f7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01426.miRNA-Seq.Tpb.hg38 C3L-01426 AML miRNA-Seq tumor_peripheral_blood CPT0284660002 58cdb69a-8732-4879-a59c-6c9cec72ecb2_mirnaseq_gdc_realn.bam 245138572 BAM harmonized CPTAC3 86be831c-6f39-46fa-a21d-4a7c191cdbf5 3d0b391a22aff5c3f98676274085c808 { 'aliquot_tag': 'ALQ_a68c3f7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01426.RNA-Seq.chimeric.Tpb.hg38 C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 a815beba-b529-45a4-b347-8383ce6ce478.rna_seq.chimeric.gdc_realn.bam 283168028 BAM chimeric harmonized CPTAC3 a13c6e4e-18e8-4d5c-8f33-7abe83673e81 515afb84d43dd67dea3e86b938c7e67d { 'aliquot_tag': 'ALQ_a68c3f7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01426.RNA-Seq.genomic.Tpb.hg38 C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 a815beba-b529-45a4-b347-8383ce6ce478.rna_seq.genomic.gdc_realn.bam 7504924340 BAM genomic harmonized CPTAC3 31d09381-5988-47a9-b430-6a91bd4d59b3 3ce6f241a844f4b8e4c9bb0c39a8bf3b { 'aliquot_tag': 'ALQ_a68c3f7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01426.RNA-Seq.R1_L001.Tpb C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L001_R1_001.fastq.gz 3181868063 FASTQ R1_L001 unaligned CPTAC3 8968ac3f-af34-49ac-bda9-abfc9b0e6373 ce02dffddecb3732cd3ae4b802013210 { 'aliquot_tag': 'ALQ_a68c3f7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L001' } +C3L-01426.RNA-Seq.R2_L001.Tpb C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L001_R2_001.fastq.gz 3581567319 FASTQ R2_L001 unaligned CPTAC3 fe29e9a1-2fc3-4f7d-a588-d6a803878000 36d7c0f424e6cd19c0dbc5e2af66a0ba { 'aliquot_tag': 'ALQ_a68c3f7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L001' } +C3L-01426.RNA-Seq.transcriptome.Tpb.hg38 C3L-01426 AML RNA-Seq tumor_peripheral_blood CPT0284660002 a815beba-b529-45a4-b347-8383ce6ce478.rna_seq.transcriptome.gdc_realn.bam 9573441156 BAM transcriptome harmonized CPTAC3 00c1d202-c4b5-483e-8c2f-59f53b5dd802 49923519a076f1ef8fe8133b64aacb7c { 'aliquot_tag': 'ALQ_a68c3f7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01426.WGS.Nbc C3L-01426 AML WGS buccal_normal CPT0284710001 CPT0284710001.WholeGenome.RP-2158.bam 50194555609 BAM aligned CPTAC3 4e0d3d0a-58e1-4a97-960f-ace505493569 54662c220d4adb94bf64c7e76aa7e201 { 'aliquot_tag': 'ALQ_46f96173', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01426.WGS.Nbc.hg38 C3L-01426 AML WGS buccal_normal CPT0284710001 d7d4d74c-a8d7-400c-850f-7fc74d0072c9_wgs_gdc_realn.bam 151915395331 BAM harmonized CPTAC3 d6162a5c-7200-4643-ad34-2f17276ad642 8cd265d2705abe514a772f4305a89a8a { 'aliquot_tag': 'ALQ_46f96173', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01426.WGS.Tpb C3L-01426 AML WGS tumor_peripheral_blood CPT0284650002 CPT0284650002.WholeGenome.RP-2158.bam 40851704572 BAM aligned CPTAC3 303de2ae-ea0b-4686-9934-409f3408e8a5 b36b3de45cff1c9f57ad34ec2cbfb533 { 'aliquot_tag': 'ALQ_e12c45ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01426.WGS.Tpb.hg38 C3L-01426 AML WGS tumor_peripheral_blood CPT0284650002 0cf0d6c0-c3d1-451a-bc54-d97be532b56a_wgs_gdc_realn.bam 123766292830 BAM harmonized CPTAC3 600534ec-3fd0-420d-9d39-45bf59abea96 9b3db6128aa8c6322111ebe55e60fe45 { 'aliquot_tag': 'ALQ_e12c45ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01426.WXS.Nbc C3L-01426 AML WXS buccal_normal CPT0284710001 CPT0284710001.WholeExome.RP-1303.bam 27252005698 BAM aligned CPTAC3 bc33252a-2427-4340-840e-321f869c4272 6ed100c19f1b48df69f42a7c0322468f { 'aliquot_tag': 'ALQ_46f96173', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01426.WXS.Nbc.hg38 C3L-01426 AML WXS buccal_normal CPT0284710001 d7d4d74c-a8d7-400c-850f-7fc74d0072c9_wxs_gdc_realn.bam 36774705127 BAM harmonized CPTAC3 fd8ed386-d649-451f-bc9d-c3f7122c67d4 aa59eed52efa807a72652a391637072f { 'aliquot_tag': 'ALQ_46f96173', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01426.WXS.Tpb C3L-01426 AML WXS tumor_peripheral_blood CPT0284650002 CPT0284650002.WholeExome.RP-1303.bam 25186131845 BAM aligned CPTAC3 c29afc3d-4702-4aff-8d7c-76e05dd9aaf6 21f7488a3e7fcc324dac5ecc6964765b { 'aliquot_tag': 'ALQ_e12c45ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01426.WXS.Tpb.hg38 C3L-01426 AML WXS tumor_peripheral_blood CPT0284650002 0cf0d6c0-c3d1-451a-bc54-d97be532b56a_wxs_gdc_realn.bam 34689978278 BAM harmonized CPTAC3 47de7679-eeae-4887-9f0d-948efbe6eb3e 70076f6f667b56045057a6ff48ee903a { 'aliquot_tag': 'ALQ_e12c45ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01427.MethArray.Green.Tpb C3L-01427 AML Methylation Array tumor_peripheral_blood CPT0275410002 205987780094_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e839fca1-4f3f-48d9-98a0-cd31e19d0fed f6c68eae91703cf3c3e238f1458e74e4 { 'aliquot_tag': 'ALQ_26335b7f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01427.MethArray.Red.Tpb C3L-01427 AML Methylation Array tumor_peripheral_blood CPT0275410002 205987780094_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 deb0eb13-4caf-4ff5-9501-9068f34b3699 351db33d6f26d0ba4c3f686484ecd99f { 'aliquot_tag': 'ALQ_26335b7f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01427.miRNA-Seq.Tpb C3L-01427 AML miRNA-Seq tumor_peripheral_blood CPT0275430002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATGGC_S6_L001_R1_001.unaln.bam 201593405 BAM unaligned CPTAC3 5c32f9dd-27ac-4985-a009-0b729eb323f0 2c012983a0ecc1d2cf1db655bc1d4d5b { 'aliquot_tag': 'ALQ_5cf3081f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-01427.RNA-Seq.R1_L001.Tpb C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L001_R1_001.fastq.gz 4438127361 FASTQ R1_L001 unaligned CPTAC3 7874f5f7-1f87-491e-9daa-b1367b31131e c7a65f6270a55da3a96ef29faf025c14 { 'aliquot_tag': 'ALQ_5cf3081f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-01427.RNA-Seq.R2_L001.Tpb C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L001_R2_001.fastq.gz 4801249773 FASTQ R2_L001 unaligned CPTAC3 28292aa9-7a99-4b48-9e8a-dcc7410d30f9 33b4ed659cfa735ca9caa916207f410e { 'aliquot_tag': 'ALQ_5cf3081f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01427.miRNA-Seq.Tpb.hg38 C3L-01427 AML miRNA-Seq tumor_peripheral_blood CPT0275430002 b5278fdd-0909-4723-95ca-71f8809bba4a_mirnaseq_gdc_realn.bam 216865124 BAM harmonized CPTAC3 11396689-7b80-4245-ac54-bc978ca7e9ed 854ae17acf817526d7e5e47379d25aa3 { 'aliquot_tag': 'ALQ_5cf3081f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01427.RNA-Seq.chimeric.Tpb.hg38 C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 13a58f29-b3b9-49d2-a034-f4c49ddce4f8.rna_seq.chimeric.gdc_realn.bam 554449558 BAM chimeric harmonized CPTAC3 e9655a39-6841-4039-b75f-e5d8023e6f49 0ff636ba1f22e2f87188f8688f99fcac { 'aliquot_tag': 'ALQ_5cf3081f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01427.RNA-Seq.genomic.Tpb.hg38 C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 13a58f29-b3b9-49d2-a034-f4c49ddce4f8.rna_seq.genomic.gdc_realn.bam 9362616231 BAM genomic harmonized CPTAC3 313c0d92-b237-4dd9-89d4-42b8c830c644 6b0277de6d346bf86093da49a5f7681e { 'aliquot_tag': 'ALQ_5cf3081f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01427.RNA-Seq.R1_L001.Tpb C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L001_R1_001.fastq.gz 4438127361 FASTQ R1_L001 unaligned CPTAC3 7874f5f7-1f87-491e-9daa-b1367b31131e c7a65f6270a55da3a96ef29faf025c14 { 'aliquot_tag': 'ALQ_5cf3081f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L001' } +C3L-01427.RNA-Seq.R2_L001.Tpb C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L001_R2_001.fastq.gz 4801249773 FASTQ R2_L001 unaligned CPTAC3 28292aa9-7a99-4b48-9e8a-dcc7410d30f9 33b4ed659cfa735ca9caa916207f410e { 'aliquot_tag': 'ALQ_5cf3081f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L001' } +C3L-01427.RNA-Seq.transcriptome.Tpb.hg38 C3L-01427 AML RNA-Seq tumor_peripheral_blood CPT0275430002 13a58f29-b3b9-49d2-a034-f4c49ddce4f8.rna_seq.transcriptome.gdc_realn.bam 10628196789 BAM transcriptome harmonized CPTAC3 e6fc1eb4-2ca4-4674-a344-01fe2f87451b 727b5dbdf6e5f46c79117cdbec9d648a { 'aliquot_tag': 'ALQ_5cf3081f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01427.WGS.Nbc C3L-01427 AML WGS buccal_normal CPT0274390002 CPT0274390002.WholeGenome.RP-2158.bam 47139336118 BAM aligned CPTAC3 b067252c-e827-48f8-8eca-642918057770 91a3881fc13ebbc6482ee67ed6414706 { 'aliquot_tag': 'ALQ_ad312bb2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01427.WGS.Nbc.hg38 C3L-01427 AML WGS buccal_normal CPT0274390002 3a131fec-e5c3-4f69-a650-79f405d9122f_wgs_gdc_realn.bam 145700879645 BAM harmonized CPTAC3 769c53ae-858c-4c6f-b0b5-4733b5d3be14 6370f08f7ef6f7d074ae7a5ef73b808f { 'aliquot_tag': 'ALQ_ad312bb2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01427.WGS.Tpb C3L-01427 AML WGS tumor_peripheral_blood CPT0275410002 CPT0275410002.WholeGenome.RP-2158.bam 44251140875 BAM aligned CPTAC3 d3705a16-00aa-4ab7-9bdb-3af2fe58efb2 8e1dd06cf44e467e9b6f5b037ff91e84 { 'aliquot_tag': 'ALQ_26335b7f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01427.WGS.Tpb.hg38 C3L-01427 AML WGS tumor_peripheral_blood CPT0275410002 cb6b4f5c-9dd8-4481-847a-aa9a1f3d73ba_wgs_gdc_realn.bam 130747771504 BAM harmonized CPTAC3 4e6e8a93-e0e6-4259-9227-345d4526b521 e1ca9dd3dd6e4a0691b82a52c89b9d31 { 'aliquot_tag': 'ALQ_26335b7f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01427.WXS.Nbc C3L-01427 AML WXS buccal_normal CPT0274390002 CPT0274390002.WholeExome.RP-1303.bam 23949907101 BAM aligned CPTAC3 3ee4eebd-452c-443a-91d9-600cf32edc43 3ce4f0337716e348a041e0f8539aafc2 { 'aliquot_tag': 'ALQ_ad312bb2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01427.WXS.Nbc.hg38 C3L-01427 AML WXS buccal_normal CPT0274390002 3a131fec-e5c3-4f69-a650-79f405d9122f_wxs_gdc_realn.bam 34638950956 BAM harmonized CPTAC3 c9de71de-5b62-4097-b051-80bc9e639eec 0c10ea3946e06e235ae0f545784ac495 { 'aliquot_tag': 'ALQ_ad312bb2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01427.WXS.Tpb C3L-01427 AML WXS tumor_peripheral_blood CPT0275410002 CPT0275410002.WholeExome.RP-1303.bam 26955710136 BAM aligned CPTAC3 1ffb9452-dd02-474e-b861-a4a979a17887 d33652c693820578bf9c7e7ec2d6edb2 { 'aliquot_tag': 'ALQ_26335b7f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01427.WXS.Tpb.hg38 C3L-01427 AML WXS tumor_peripheral_blood CPT0275410002 cb6b4f5c-9dd8-4481-847a-aa9a1f3d73ba_wxs_gdc_realn.bam 37273526505 BAM harmonized CPTAC3 272ef040-6001-45d8-8805-ae7028ab00ed 249653ad8393697d2c16fb1d01ec49c0 { 'aliquot_tag': 'ALQ_26335b7f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01453.ADD_de1eff5b.MethArray.Green.T C3L-01453 PDA Methylation Array tumor CPT0108400009 202234370119_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1761f611-bae6-46e7-b78a-08d3970f8efd ae863cf0469b9fa40261f6fc5a0d2566 { 'aliquot_tag': 'ADD_de1eff5b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional DNA for PDA Deep Sequencing' } C3L-01453.ADD_de1eff5b.MethArray.Red.T C3L-01453 PDA Methylation Array tumor CPT0108400009 202234370119_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 bfad5e5e-07eb-4e58-a472-2b436013f27e 3afcb931fcc347854e44236ce9f27e7e { 'aliquot_tag': 'ADD_de1eff5b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional DNA for PDA Deep Sequencing' } C3L-01453.ADD_de1eff5b.WGS.T C3L-01453 PDA WGS tumor CPT0108400009 CPT0108400009.WholeGenome.RP-1303.bam 68032391689 BAM aligned CPTAC3 fd9a1805-9250-4504-9779-f049675ed072 d68f211967ff6ba8fe3b05cc761f4a86 { 'aliquot_tag': 'ADD_de1eff5b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional DNA for PDA Deep Sequencing' } @@ -6983,10 +7622,10 @@ C3L-01453.RNA-Seq.chimeric.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal CPT0108410 C3L-01453.RNA-Seq.chimeric.T.hg38 C3L-01453 PDA RNA-Seq tumor CPT0108400006 faee6e8a-b1e0-4c8d-863e-06b86964ae76.rna_seq.chimeric.gdc_realn.bam 74228570 BAM chimeric harmonized CPTAC3 8ffc4f11-c5a8-4e5e-9896-db046f6f4bd1 2ad923cb4934338b130869eea7bc40bb { 'aliquot_tag': 'ALQ_4ea1e2ca', 'gdc_sample_type': 'Primary Tumor' } C3L-01453.RNA-Seq.genomic.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 1495d677-f4a4-4e51-bf97-097744053240.rna_seq.genomic.gdc_realn.bam 10071949725 BAM genomic harmonized CPTAC3 79ac452b-2c22-4e9d-95d7-fb67ff5e690d 0e12c743788f027a18cdf6e750420ee7 { 'aliquot_tag': 'ALQ_e37ed6eb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01453.RNA-Seq.genomic.T.hg38 C3L-01453 PDA RNA-Seq tumor CPT0108400006 faee6e8a-b1e0-4c8d-863e-06b86964ae76.rna_seq.genomic.gdc_realn.bam 8166968229 BAM genomic harmonized CPTAC3 c6bf43b8-0abc-4b1f-8538-a9267edc3b56 48144bfc5cb066abfccdb04aea6b3cc6 { 'aliquot_tag': 'ALQ_4ea1e2ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-01453.RNA-Seq.R1_L005.A C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R1_001.fastq.gz 4551298023 FASTQ R1_L005 unaligned CPTAC3 f6205c77-f737-451c-875e-f652c4e5512d ba0a445e7ff01b6f111fc11d00ed9659 { 'aliquot_tag': 'ALQ_e37ed6eb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01453.RNA-Seq.R1_L007.T C3L-01453 PDA RNA-Seq tumor CPT0108400006 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L007_R1_001.fastq.gz 3644119512 FASTQ R1_L007 unaligned CPTAC3 c281e89f-9c99-416f-acec-621a455321c1 3f74154189f79fada7f54e0f2fe5582d { 'aliquot_tag': 'ALQ_4ea1e2ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-01453.RNA-Seq.R2_L005.A C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R2_001.fastq.gz 5028019962 FASTQ R2_L005 unaligned CPTAC3 3c23d217-08a0-4c70-87d6-a8f654143a21 7bfea299988b310ed6f5376147b68b00 { 'aliquot_tag': 'ALQ_e37ed6eb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01453.RNA-Seq.R2_L007.T C3L-01453 PDA RNA-Seq tumor CPT0108400006 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4098243447 FASTQ R2_L007 unaligned CPTAC3 489b6a66-d9ad-4f86-8571-00e2aa811643 97f3e2d388a9b377512922fa23f5ffe9 { 'aliquot_tag': 'ALQ_4ea1e2ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-01453.RNA-Seq.R1_L005.A C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R1_001.fastq.gz 4551298023 FASTQ R1_L005 unaligned CPTAC3 f6205c77-f737-451c-875e-f652c4e5512d ba0a445e7ff01b6f111fc11d00ed9659 { 'aliquot_tag': 'ALQ_e37ed6eb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-01453.RNA-Seq.R1_L007.T C3L-01453 PDA RNA-Seq tumor CPT0108400006 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L007_R1_001.fastq.gz 3644119512 FASTQ R1_L007 unaligned CPTAC3 c281e89f-9c99-416f-acec-621a455321c1 3f74154189f79fada7f54e0f2fe5582d { 'aliquot_tag': 'ALQ_4ea1e2ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01453.RNA-Seq.R2_L005.A C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATGTCA_S18_L005_R2_001.fastq.gz 5028019962 FASTQ R2_L005 unaligned CPTAC3 3c23d217-08a0-4c70-87d6-a8f654143a21 7bfea299988b310ed6f5376147b68b00 { 'aliquot_tag': 'ALQ_e37ed6eb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-01453.RNA-Seq.R2_L007.T C3L-01453 PDA RNA-Seq tumor CPT0108400006 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4098243447 FASTQ R2_L007 unaligned CPTAC3 489b6a66-d9ad-4f86-8571-00e2aa811643 97f3e2d388a9b377512922fa23f5ffe9 { 'aliquot_tag': 'ALQ_4ea1e2ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-01453.RNA-Seq.transcriptome.A.hg38 C3L-01453 PDA RNA-Seq tissue_normal CPT0108410009 1495d677-f4a4-4e51-bf97-097744053240.rna_seq.transcriptome.gdc_realn.bam 10762405173 BAM transcriptome harmonized CPTAC3 5fdd330f-73c7-4051-9133-cf962306ba18 c9693e79568540242277780c7b5cd0f7 { 'aliquot_tag': 'ALQ_e37ed6eb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01453.RNA-Seq.transcriptome.T.hg38 C3L-01453 PDA RNA-Seq tumor CPT0108400006 faee6e8a-b1e0-4c8d-863e-06b86964ae76.rna_seq.transcriptome.gdc_realn.bam 9692242266 BAM transcriptome harmonized CPTAC3 e4058a97-b71e-489c-838d-dcd3367942b4 d2ee31dbd93d09d8c959cdf724acafc3 { 'aliquot_tag': 'ALQ_4ea1e2ca', 'gdc_sample_type': 'Primary Tumor' } C3L-01453.Targeted.T C3L-01453 PDA Targeted Sequencing tumor CPT0108400009_1 CPT0108400009_1.CustomSelection.RP-1303.PDO-18786.bam 4060470419 BAM aligned CPTAC3 78e1f9ea-e48e-455f-951f-1449e5cccf23 959b8afaa1703662d21e32ea7b2799ae { 'aliquot_tag': 'ALQ_5969e652', 'gdc_sample_type': 'Primary Tumor' } @@ -7011,12 +7650,12 @@ C3L-01455.miRNA-Seq.T C3L-01455 LSCC miRNA-Seq tumor CPT0108560006 181119_UNC31- C3L-01455.miRNA-Seq.T.hg38 C3L-01455 LSCC miRNA-Seq tumor CPT0108560006 d40aab85-d14e-4420-a7b6-8c87cffdf9bf_mirnaseq_gdc_realn.bam 231010181 BAM harmonized CPTAC3 d7f3b2fd-501f-463b-80f6-108b6ac988e8 8bd83c4b1811443e37fa6ab9bafef4ae { 'aliquot_tag': 'ALQ_abdc4cf', 'gdc_sample_type': 'Primary Tumor' } C3L-01455.RNA-Seq.chimeric.A.hg38 C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 7c28554b-6e0e-43c2-94eb-b59f99e088ce.rna_seq.chimeric.gdc_realn.bam 43187413 BAM chimeric harmonized CPTAC3 158430a1-3d24-407e-82b7-c10bfee1b6c3 88fdb659b69dc9903ee228ea2b28ae1a { 'aliquot_tag': 'ALQ_93d65e50', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01455.RNA-Seq.chimeric.T.hg38 C3L-01455 LSCC RNA-Seq tumor CPT0108560006 09813133-2421-425b-858f-d633765b52d8.rna_seq.chimeric.gdc_realn.bam 99210508 BAM chimeric harmonized CPTAC3 70d587de-64b4-49ec-8f83-bb6fdd4861bf 5d56a611ed5f6f93e93f0b62ec2568b9 { 'aliquot_tag': 'ALQ_abdc4cf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01455.RNA-Seq.genomic.A.hg38 C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 7c28554b-6e0e-43c2-94eb-b59f99e088ce.rna_seq.genomic.gdc_realn.bam 8576021050 BAM genomic harmonized CPTAC3 8a4c1536-6427-4f04-9f6a-587597244bdc 891c80c66ec858467bd1c97bd12d0641 { 'aliquot_tag': 'ALQ_93d65e50', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01455.RNA-Seq.genomic.T.hg38 C3L-01455 LSCC RNA-Seq tumor CPT0108560006 09813133-2421-425b-858f-d633765b52d8.rna_seq.genomic.gdc_realn.bam 9837935642 BAM genomic harmonized CPTAC3 214bd956-9748-4fe1-a02c-a44cb06f94dc ad76afb78f9f1d0518501c8e9d55301b { 'aliquot_tag': 'ALQ_abdc4cf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01455.RNA-Seq.R1_L002.A C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 3998696668 FASTQ R1_L002 unaligned CPTAC3 ee74ec6a-6226-4430-bf1b-f96aa946931d aaeb229421c05122c3714ebd8ea3fedd { 'aliquot_tag': 'ALQ_93d65e50', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01455.RNA-Seq.R1_L006.T C3L-01455 LSCC RNA-Seq tumor CPT0108560006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTCAA_S22_L006_R1_001.fastq.gz 4042577316 FASTQ R1_L006 unaligned CPTAC3 9f009ff0-5b5b-4355-9421-1d98b9d4310c e630217a5d49f66e1c9854fdb781d750 { 'aliquot_tag': 'ALQ_abdc4cf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01455.RNA-Seq.R2_L002.A C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4361133643 FASTQ R2_L002 unaligned CPTAC3 fad524b8-265f-4b7b-bcc9-d2cddba083c6 9d5d76a84fff086fcbbcd36b05ec5c1f { 'aliquot_tag': 'ALQ_93d65e50', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01455.RNA-Seq.R2_L006.T C3L-01455 LSCC RNA-Seq tumor CPT0108560006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTCAA_S22_L006_R2_001.fastq.gz 4516104896 FASTQ R2_L006 unaligned CPTAC3 b416578f-5d0e-49fc-be46-ad8150cfb1b9 a30a76295104381b122be5a7a5c33efb { 'aliquot_tag': 'ALQ_abdc4cf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01455.RNA-Seq.genomic.A.hg38 C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 7c28554b-6e0e-43c2-94eb-b59f99e088ce.rna_seq.genomic.gdc_realn.bam 8576021050 BAM genomic harmonized CPTAC3 3beb7749-6b69-491c-920a-67c57ced9685 891c80c66ec858467bd1c97bd12d0641 { 'aliquot_tag': 'ALQ_93d65e50', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01455.RNA-Seq.genomic.T.hg38 C3L-01455 LSCC RNA-Seq tumor CPT0108560006 09813133-2421-425b-858f-d633765b52d8.rna_seq.genomic.gdc_realn.bam 9837935642 BAM genomic harmonized CPTAC3 ba04ca77-3093-4e6a-8937-33c7dc072eae ad76afb78f9f1d0518501c8e9d55301b { 'aliquot_tag': 'ALQ_abdc4cf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01455.RNA-Seq.R1_L002.A C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 3998696668 FASTQ R1_L002 unaligned CPTAC3 ee74ec6a-6226-4430-bf1b-f96aa946931d aaeb229421c05122c3714ebd8ea3fedd { 'aliquot_tag': 'ALQ_93d65e50', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01455.RNA-Seq.R1_L006.T C3L-01455 LSCC RNA-Seq tumor CPT0108560006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTCAA_S22_L006_R1_001.fastq.gz 4042577316 FASTQ R1_L006 unaligned CPTAC3 9f009ff0-5b5b-4355-9421-1d98b9d4310c e630217a5d49f66e1c9854fdb781d750 { 'aliquot_tag': 'ALQ_abdc4cf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01455.RNA-Seq.R2_L002.A C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4361133643 FASTQ R2_L002 unaligned CPTAC3 fad524b8-265f-4b7b-bcc9-d2cddba083c6 9d5d76a84fff086fcbbcd36b05ec5c1f { 'aliquot_tag': 'ALQ_93d65e50', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01455.RNA-Seq.R2_L006.T C3L-01455 LSCC RNA-Seq tumor CPT0108560006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTCAA_S22_L006_R2_001.fastq.gz 4516104896 FASTQ R2_L006 unaligned CPTAC3 b416578f-5d0e-49fc-be46-ad8150cfb1b9 a30a76295104381b122be5a7a5c33efb { 'aliquot_tag': 'ALQ_abdc4cf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-01455.RNA-Seq.transcriptome.A.hg38 C3L-01455 LSCC RNA-Seq tissue_normal CPT0108600009 7c28554b-6e0e-43c2-94eb-b59f99e088ce.rna_seq.transcriptome.gdc_realn.bam 10753406411 BAM transcriptome harmonized CPTAC3 9f95629b-5e03-4b5f-a06a-3f75710feac3 ea14758e4a7b509283f99c0b73b00e22 { 'aliquot_tag': 'ALQ_93d65e50', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01455.RNA-Seq.transcriptome.T.hg38 C3L-01455 LSCC RNA-Seq tumor CPT0108560006 09813133-2421-425b-858f-d633765b52d8.rna_seq.transcriptome.gdc_realn.bam 10859607228 BAM transcriptome harmonized CPTAC3 6a25b28f-d43d-4481-a64e-64f18294590e 551bfce6687128be28f17cb7e9b85618 { 'aliquot_tag': 'ALQ_abdc4cf', 'gdc_sample_type': 'Primary Tumor' } C3L-01455.WGS.A C3L-01455 LSCC WGS tissue_normal CPT0108600006 CPT0108600006.WholeGenome.RP-1303.bam 59875554142 BAM aligned CPTAC3 9b8f7cfd-6b58-4b5a-9d42-2c6f71865400 40cf8c8cd3df93fa9a3cbc75dc9b048f { 'aliquot_tag': 'ALQ_36943c1', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -7035,11 +7674,11 @@ C3L-01458.MethArray.Green.T C3L-01458 CCRCC Methylation Array tumor CPT039017000 C3L-01458.MethArray.Red.T C3L-01458 CCRCC Methylation Array tumor CPT0390170006 205549610122_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 e1dcf797-6543-440f-93d5-e9c95424e87c a1cd6d81014723fa9808a81c3e193ff9 { 'aliquot_tag': 'ALQ_ae1ad2a3', 'gdc_sample_type': 'Primary Tumor' } C3L-01458.miRNA-Seq.T C3L-01458 CCRCC miRNA-Seq tumor CPT0390170009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GACGAC_S31_L002_R1_001.unaln.bam 217992675 BAM unaligned CPTAC3 5eb469ed-6035-4abd-a844-d267773d4872 3ceeb2c1b381c9f653d2b2ed7a136557 { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor' } C3L-01458.miRNA-Seq.T.hg38 C3L-01458 CCRCC miRNA-Seq tumor CPT0390170009 714cc837-dd3c-4cf3-8a4f-f0696f0c73cf_mirnaseq_gdc_realn.bam 233164726 BAM harmonized CPTAC3 5f58803d-6d53-4a44-9071-2138fc09ae95 4aefb3e8e3f5c2db61c963742ca9bb27 { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor' } -C3L-01458.RNA-Seq.chimeric.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c007c80c-15da-4c52-9f25-e4b5e8a36b4a.rna_seq.chimeric.gdc_realn.bam 445629586 BAM chimeric harmonized CPTAC3 f880f7b3-5f13-4333-bb26-2dc3ec3b49c8 a5403038590bd3a46caa7849449dd9f7 { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor' } -C3L-01458.RNA-Seq.genomic.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c007c80c-15da-4c52-9f25-e4b5e8a36b4a.rna_seq.genomic.gdc_realn.bam 9570913501 BAM genomic harmonized CPTAC3 10071a70-7ddb-4ada-8243-db8742b69e2d 9ad382a3d9e58227ff991e6f92d951ae { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor' } -C3L-01458.RNA-Seq.R1_L007.T C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATGGAT-CTGTATTA_S23_L007_R1_001.fastq.gz 4660415968 FASTQ R1_L007 unaligned CPTAC3 4bf103dd-9eae-436b-8760-fca54c6ac329 92167d0cc77257eaf73d5a6e62297c19 { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor' } -C3L-01458.RNA-Seq.R2_L007.T C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATGGAT-CTGTATTA_S23_L007_R2_001.fastq.gz 5178408148 FASTQ R2_L007 unaligned CPTAC3 3d08172e-06e8-43f7-a9ab-7df17eec4f52 d3324dad7730abe39030a5b61e5c2488 { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor' } -C3L-01458.RNA-Seq.transcriptome.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c007c80c-15da-4c52-9f25-e4b5e8a36b4a.rna_seq.transcriptome.gdc_realn.bam 9798297660 BAM transcriptome harmonized CPTAC3 b256badc-924c-4752-a50e-8759cfae475d 3eaafc25b084687b1b3bfc2d9e638a7c { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor' } +C3L-01458.RNA-Seq.chimeric.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c82d84a4-5224-4ada-8390-57b9ee6a0510.rna_seq.chimeric.gdc_realn.bam 445680814 BAM chimeric harmonized CPTAC3 93228a4e-ec5a-4079-8a88-d7a998c682aa c08f03f32b80d3245e2d64f33936cf30 { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor' } +C3L-01458.RNA-Seq.genomic.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c82d84a4-5224-4ada-8390-57b9ee6a0510.rna_seq.genomic.gdc_realn.bam 9578086078 BAM genomic harmonized CPTAC3 127d008c-6a01-4fca-89b8-750b8b2a2c83 052cc0242c0656f91f3c9f8d45073efe { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor' } +C3L-01458.RNA-Seq.R1_L007.T C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATGGAT-CTGTATTA_S23_L007_R1_001.fastq.gz 4660415968 FASTQ R1_L007 unaligned CPTAC3 4bf103dd-9eae-436b-8760-fca54c6ac329 92167d0cc77257eaf73d5a6e62297c19 { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01458.RNA-Seq.R2_L007.T C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATGGAT-CTGTATTA_S23_L007_R2_001.fastq.gz 5178408148 FASTQ R2_L007 unaligned CPTAC3 3d08172e-06e8-43f7-a9ab-7df17eec4f52 d3324dad7730abe39030a5b61e5c2488 { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-01458.RNA-Seq.transcriptome.T.hg38 C3L-01458 CCRCC RNA-Seq tumor CPT0390170009 c82d84a4-5224-4ada-8390-57b9ee6a0510.rna_seq.transcriptome.gdc_realn.bam 11216396346 BAM transcriptome harmonized CPTAC3 9b7d08cf-d205-4029-99c4-5cda2d363a0e 3f183859be479a64d5319d3ddd42aabf { 'aliquot_tag': 'ALQ_3ea5cf32', 'gdc_sample_type': 'Primary Tumor' } C3L-01458.WGS.N C3L-01458 CCRCC WGS blood_normal CPT0390230002 CPT0390230002.WholeGenome.RP-2158.bam 23037302434 BAM aligned CPTAC3 b1e67fc4-3b73-4f2b-a294-b9c4bd32e829 e6fdf358726d81efa2cf762b85fa2a2d { 'aliquot_tag': 'ALQ_da63c2d4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01458.WGS.N.hg38 C3L-01458 CCRCC WGS blood_normal CPT0390230002 d6925774-b5fa-4272-8e37-e92825c5af19_wgs_gdc_realn.bam 70652559004 BAM harmonized CPTAC3 2e2868ab-fdbf-44d2-a472-a0ca6a1cbc48 29ab65a6abf17f241a24bbb4560b0e79 { 'aliquot_tag': 'ALQ_da63c2d4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01458.WGS.T C3L-01458 CCRCC WGS tumor CPT0390170006 CPT0390170006.WholeGenome.RP-2158.bam 24529184603 BAM aligned CPTAC3 dd8e2cb5-9a0f-496e-972a-c8b452c1f121 290e7de644d28978308bdb50baba9f19 { 'aliquot_tag': 'ALQ_ae1ad2a3', 'gdc_sample_type': 'Primary Tumor' } @@ -7052,11 +7691,11 @@ C3L-01459.MethArray.Green.T C3L-01459 CCRCC Methylation Array tumor CPT008563000 C3L-01459.MethArray.Red.T C3L-01459 CCRCC Methylation Array tumor CPT0085630009 202176290147_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 b7156ac6-a374-4733-aea6-fd27041db955 6ef422c108c05372251a3f2fcb068649 { 'aliquot_tag': 'ALQ_713f4ab6', 'gdc_sample_type': 'Primary Tumor' } C3L-01459.miRNA-Seq.T C3L-01459 CCRCC miRNA-Seq tumor CPT0085630005 181113_UNC31-K00269_0164_AH23NNBBXY_CTTGTA_S36_L004_R1_001.unaln.bam 217477479 BAM unaligned CPTAC3 2145088f-9eb1-4a4f-a4a2-8d64aeea7b55 4a9db9ec82b67f336138f886d9c4079d { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor' } C3L-01459.miRNA-Seq.T.hg38 C3L-01459 CCRCC miRNA-Seq tumor CPT0085630005 a9eb74cd-1353-4747-9c64-7969dbfc41fc_mirnaseq_gdc_realn.bam 236675980 BAM harmonized CPTAC3 4f09e913-c72d-45d6-a480-a471e025c414 093b8abc6b908a04c80974a2062c9ae1 { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01459.RNA-Seq.chimeric.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 af745701-6a13-46cc-ad22-61d1dc9d4c8f.rna_seq.chimeric.gdc_realn.bam 43625910 BAM chimeric harmonized CPTAC3 d01f758b-d77b-4365-a37f-b744de8169fd 74ee2c1c7e617aa20ac82ee6c0fcf0d6 { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01459.RNA-Seq.genomic.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 af745701-6a13-46cc-ad22-61d1dc9d4c8f.rna_seq.genomic.gdc_realn.bam 8898639792 BAM genomic harmonized CPTAC3 1e075bff-f580-443f-b1ee-908f629c8005 9132cbf027a2cebd8794b1c8068c30d5 { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01459.RNA-Seq.R1_L005.T C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 170908_UNC31-K00269_0080_BHLJ52BBXX_GTCCGC_S19_L005_R1_001.fastq.gz 4146216879 FASTQ R1_L005 unaligned CPTAC3 fb9d15da-1e77-4e47-b202-e8240c7b9b60 e56f0368ab9e3e84a30e418a8a7f6b5f { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01459.RNA-Seq.R2_L005.T C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 170908_UNC31-K00269_0080_BHLJ52BBXX_GTCCGC_S19_L005_R2_001.fastq.gz 4542324144 FASTQ R2_L005 unaligned CPTAC3 88270c78-1ebe-4947-9bb6-7ac901ea33f7 0a6834455a345b77ca3ff0fadd33c6dd { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01459.RNA-Seq.transcriptome.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 af745701-6a13-46cc-ad22-61d1dc9d4c8f.rna_seq.transcriptome.gdc_realn.bam 9963012605 BAM transcriptome harmonized CPTAC3 ff45d89b-8f6b-4dd1-93fa-ae8586a72828 fe8d73fda60fe3bd3bb85830560fd4a5 { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor' } +C3L-01459.RNA-Seq.chimeric.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 4d0f380b-8a26-4708-afee-4b4c821b3809.rna_seq.chimeric.gdc_realn.bam 43606472 BAM chimeric harmonized CPTAC3 d0eb822d-f947-4cb5-beeb-c4cf3aef5092 a1e03805af5680719dd4b0826058f329 { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor' } +C3L-01459.RNA-Seq.genomic.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 4d0f380b-8a26-4708-afee-4b4c821b3809.rna_seq.genomic.gdc_realn.bam 8900532806 BAM genomic harmonized CPTAC3 19e9c84d-cf4e-40d5-af9b-0bad3d839402 cee1f2b392f5b40332878509d765e087 { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor' } +C3L-01459.RNA-Seq.R1_L005.T C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 170908_UNC31-K00269_0080_BHLJ52BBXX_GTCCGC_S19_L005_R1_001.fastq.gz 4146216879 FASTQ R1_L005 unaligned CPTAC3 fb9d15da-1e77-4e47-b202-e8240c7b9b60 e56f0368ab9e3e84a30e418a8a7f6b5f { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01459.RNA-Seq.R2_L005.T C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 170908_UNC31-K00269_0080_BHLJ52BBXX_GTCCGC_S19_L005_R2_001.fastq.gz 4542324144 FASTQ R2_L005 unaligned CPTAC3 88270c78-1ebe-4947-9bb6-7ac901ea33f7 0a6834455a345b77ca3ff0fadd33c6dd { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01459.RNA-Seq.transcriptome.T.hg38 C3L-01459 CCRCC RNA-Seq tumor CPT0085630005 4d0f380b-8a26-4708-afee-4b4c821b3809.rna_seq.transcriptome.gdc_realn.bam 11331639475 BAM transcriptome harmonized CPTAC3 156226cc-5d9c-42c8-b9cf-91200eeb1f5c 1483439f10b993963a4f96fc098ce1ab { 'aliquot_tag': 'ALQ_7889069d', 'gdc_sample_type': 'Primary Tumor' } C3L-01459.WGS.N C3L-01459 CCRCC WGS blood_normal CPT0086590002 CPT0086590002.WholeGenome.RP-1303.bam 73659720846 BAM aligned CPTAC3 ae717143-e888-47b6-81c0-8a07380ee8d6 f609f774bbe9a1f1abcfa914966af063 { 'aliquot_tag': 'ALQ_1b21e3ac', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01459.WGS.N.hg38 C3L-01459 CCRCC WGS blood_normal CPT0086590002 04b86eab-b41c-4b80-bf4f-ca867afe4c02_gdc_realn.bam 111782579047 BAM harmonized CPTAC3 c36ff144-2cea-4141-91a3-0d71ee37dcb7 c2c1944548d73706260e9aa1c2397dc6 { 'aliquot_tag': 'ALQ_1b21e3ac', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01459.WGS.T C3L-01459 CCRCC WGS tumor CPT0085630009 CPT0085630009.WholeGenome.RP-1303.bam 68012162148 BAM aligned CPTAC3 6a512ea4-a345-416a-8a52-da9501e3c5f0 3c866a13da74b6006700ef71c256bc82 { 'aliquot_tag': 'ALQ_713f4ab6', 'gdc_sample_type': 'Primary Tumor' } @@ -7069,11 +7708,11 @@ C3L-01460.MethArray.Green.T C3L-01460 CCRCC Methylation Array tumor CPT039025000 C3L-01460.MethArray.Red.T C3L-01460 CCRCC Methylation Array tumor CPT0390250006 205549610122_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 11713cbb-f4fc-4f15-9b1f-1088d7c0e9b6 7abdd1e581c2794c8e25c5c8b46879bc { 'aliquot_tag': 'ALQ_524ef36d', 'gdc_sample_type': 'Primary Tumor' } C3L-01460.miRNA-Seq.T C3L-01460 CCRCC miRNA-Seq tumor CPT0390250009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TAATCG_S32_L002_R1_001.unaln.bam 299349773 BAM unaligned CPTAC3 d3e59793-3c02-417b-bede-5bb6f94d3964 6660810d0f05557f6b4f8ca89745edc4 { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor' } C3L-01460.miRNA-Seq.T.hg38 C3L-01460 CCRCC miRNA-Seq tumor CPT0390250009 bf650281-c3ce-4239-9e5e-1a671946a345_mirnaseq_gdc_realn.bam 323150786 BAM harmonized CPTAC3 00ed8973-b493-431a-9b35-7944f52b0a7e 1997d84f0538b70af9b964e92d8f4cb0 { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor' } -C3L-01460.RNA-Seq.chimeric.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 e5f69cf9-3c1c-4594-b1f2-6a68b6ec9e16.rna_seq.chimeric.gdc_realn.bam 394440532 BAM chimeric harmonized CPTAC3 553ea62d-ead3-498c-bbaf-17058be1780a 3bb4f5f2ce57e8edb40889134980d606 { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor' } -C3L-01460.RNA-Seq.genomic.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 e5f69cf9-3c1c-4594-b1f2-6a68b6ec9e16.rna_seq.genomic.gdc_realn.bam 7587251193 BAM genomic harmonized CPTAC3 76d3c86e-14cf-47f3-acd0-0a23b47da843 d7d3dbbd6291490e905c7c5f7f9116d7 { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor' } -C3L-01460.RNA-Seq.R1_L007.T C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCAAGC-TCACGCCG_S24_L007_R1_001.fastq.gz 3574421309 FASTQ R1_L007 unaligned CPTAC3 fd69960a-6ac1-4877-9eb5-5c2bfcc295a0 0410834c24ab75685e0a64dba91f9f15 { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor' } -C3L-01460.RNA-Seq.R2_L007.T C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCAAGC-TCACGCCG_S24_L007_R2_001.fastq.gz 4062071642 FASTQ R2_L007 unaligned CPTAC3 725de49b-912a-41fb-8024-5525d5d1d883 fd277bf8d54d829e388d61f3ff56eb1d { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor' } -C3L-01460.RNA-Seq.transcriptome.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 e5f69cf9-3c1c-4594-b1f2-6a68b6ec9e16.rna_seq.transcriptome.gdc_realn.bam 8883959931 BAM transcriptome harmonized CPTAC3 8cffc63d-e7ad-4e77-9fa0-5bd5bad7f4db 96e6707b5615991bff966b233f7c72e6 { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor' } +C3L-01460.RNA-Seq.chimeric.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 ccd3da19-8741-4c99-b810-6fef49d91f4c.rna_seq.chimeric.gdc_realn.bam 394482866 BAM chimeric harmonized CPTAC3 8af9ba9d-5a1b-4c9c-b214-97692ceb9c6f f5ee6b0cb592ed8ecea6838dc2a69eeb { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor' } +C3L-01460.RNA-Seq.genomic.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 ccd3da19-8741-4c99-b810-6fef49d91f4c.rna_seq.genomic.gdc_realn.bam 7593381016 BAM genomic harmonized CPTAC3 a7f0dd8e-d8b9-4133-b59e-1e8f90131834 8c94303235e8e4778590058f73331f67 { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor' } +C3L-01460.RNA-Seq.R1_L007.T C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCAAGC-TCACGCCG_S24_L007_R1_001.fastq.gz 3574421309 FASTQ R1_L007 unaligned CPTAC3 fd69960a-6ac1-4877-9eb5-5c2bfcc295a0 0410834c24ab75685e0a64dba91f9f15 { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01460.RNA-Seq.R2_L007.T C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCAAGC-TCACGCCG_S24_L007_R2_001.fastq.gz 4062071642 FASTQ R2_L007 unaligned CPTAC3 725de49b-912a-41fb-8024-5525d5d1d883 fd277bf8d54d829e388d61f3ff56eb1d { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-01460.RNA-Seq.transcriptome.T.hg38 C3L-01460 CCRCC RNA-Seq tumor CPT0390250009 ccd3da19-8741-4c99-b810-6fef49d91f4c.rna_seq.transcriptome.gdc_realn.bam 10201743660 BAM transcriptome harmonized CPTAC3 ff3aeaaf-4f9a-4ff5-9920-e4f9122f6a9e 0cbe70b599957e8940272bf08550e599 { 'aliquot_tag': 'ALQ_c2f1eefc', 'gdc_sample_type': 'Primary Tumor' } C3L-01460.WGS.N C3L-01460 CCRCC WGS blood_normal CPT0390310002 CPT0390310002.WholeGenome.RP-2158.bam 24866628305 BAM aligned CPTAC3 5fd5900f-59d8-4c13-a25e-dc6a00adf09f 6aa71a683370cfdc8eee909210c4f83c { 'aliquot_tag': 'ALQ_6bff4211', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01460.WGS.N.hg38 C3L-01460 CCRCC WGS blood_normal CPT0390310002 795eb542-2268-44b0-b585-6d9d188d430d_wgs_gdc_realn.bam 76972115849 BAM harmonized CPTAC3 e4a6947d-14e6-4e28-b437-abb70a71835a b93d7a7f1bdcd6190d7005c8d2148588 { 'aliquot_tag': 'ALQ_6bff4211', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01460.WGS.T C3L-01460 CCRCC WGS tumor CPT0390250006 CPT0390250006.WholeGenome.RP-2158.bam 25988028703 BAM aligned CPTAC3 4026e525-20ac-4da4-b61d-5688fa74e610 ab5dfa3555addf17084f14a11533d013 { 'aliquot_tag': 'ALQ_524ef36d', 'gdc_sample_type': 'Primary Tumor' } @@ -7086,11 +7725,11 @@ C3L-01461.MethArray.Green.T C3L-01461 CCRCC Methylation Array tumor CPT039012000 C3L-01461.MethArray.Red.T C3L-01461 CCRCC Methylation Array tumor CPT0390120006 205589730117_R02C01_Red.idat 13677957 IDAT Red NA CPTAC3 c6ec4c77-afce-4c28-8f6a-457f84639947 1fd21c75d4a8d160215f16a0112d4708 { 'aliquot_tag': 'ALQ_66fa5dd3', 'gdc_sample_type': 'Primary Tumor' } C3L-01461.miRNA-Seq.T C3L-01461 CCRCC miRNA-Seq tumor CPT0390120009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CTCAGA_S30_L002_R1_001.unaln.bam 323140418 BAM unaligned CPTAC3 b5ccd7c5-2353-492d-8669-81f8235d80f4 0afbfc217a46b0ed7aadf170e12af736 { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor' } C3L-01461.miRNA-Seq.T.hg38 C3L-01461 CCRCC miRNA-Seq tumor CPT0390120009 04c565f1-c871-4aab-9060-222c76b3871e_mirnaseq_gdc_realn.bam 347007377 BAM harmonized CPTAC3 ae0cc7e9-27e4-4d76-844e-bf0fe1f8576b 5229110c9366ebbefb649228d04f8390 { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor' } -C3L-01461.RNA-Seq.chimeric.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 2fe3d247-3940-4364-a151-67ecf6204370.rna_seq.chimeric.gdc_realn.bam 188123532 BAM chimeric harmonized CPTAC3 479e4743-9408-499b-9249-e011ce1904c6 012cea8ba0ad4e02c67bfc24c645220d { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor' } -C3L-01461.RNA-Seq.genomic.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 2fe3d247-3940-4364-a151-67ecf6204370.rna_seq.genomic.gdc_realn.bam 10079356858 BAM genomic harmonized CPTAC3 d546a9e0-b1e7-4f07-b39b-b7fa7d7592f7 c7f720b3e11e787dfa1fcce6bc0a1270 { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor' } -C3L-01461.RNA-Seq.R1_L008.T C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 210105_UNC32-K00270_0268_AHK7HMBBXY_CGGACAAC-TCCGGATT_S26_L008_R1_001.fastq.gz 4612691095 FASTQ R1_L008 unaligned CPTAC3 f93d5186-f118-4b95-acc1-cfd33dd98295 caddad3386d9fb3ef80ef4a75e08b214 { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor' } -C3L-01461.RNA-Seq.R2_L008.T C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 210105_UNC32-K00270_0268_AHK7HMBBXY_CGGACAAC-TCCGGATT_S26_L008_R2_001.fastq.gz 5371389379 FASTQ R2_L008 unaligned CPTAC3 2f49c25f-4a47-447a-a280-8a7d960a5bcf 7de17d51fd78d0ad7f9774ffaefe8b84 { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor' } -C3L-01461.RNA-Seq.transcriptome.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 2fe3d247-3940-4364-a151-67ecf6204370.rna_seq.transcriptome.gdc_realn.bam 11417635020 BAM transcriptome harmonized CPTAC3 2056f22e-833e-4d99-b6c6-c3e2215cf2cd 2fa8e64dd6d0599c2254212bb90fbb80 { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor' } +C3L-01461.RNA-Seq.chimeric.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 be253974-ebfe-4198-954c-7e1db48f6b1a.rna_seq.chimeric.gdc_realn.bam 188127124 BAM chimeric harmonized CPTAC3 49dc05e7-f122-43a9-a1b0-fff178a8dcaa 4dfe01f39f699f996fe24da362307f2e { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor' } +C3L-01461.RNA-Seq.genomic.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 be253974-ebfe-4198-954c-7e1db48f6b1a.rna_seq.genomic.gdc_realn.bam 10090382210 BAM genomic harmonized CPTAC3 9ce9e638-56b7-4662-ae8a-d7da37a0618d 0af18631488e67cf3c98db4f5e7e0158 { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor' } +C3L-01461.RNA-Seq.R1_L008.T C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 210105_UNC32-K00270_0268_AHK7HMBBXY_CGGACAAC-TCCGGATT_S26_L008_R1_001.fastq.gz 4612691095 FASTQ R1_L008 unaligned CPTAC3 f93d5186-f118-4b95-acc1-cfd33dd98295 caddad3386d9fb3ef80ef4a75e08b214 { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01461.RNA-Seq.R2_L008.T C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 210105_UNC32-K00270_0268_AHK7HMBBXY_CGGACAAC-TCCGGATT_S26_L008_R2_001.fastq.gz 5371389379 FASTQ R2_L008 unaligned CPTAC3 2f49c25f-4a47-447a-a280-8a7d960a5bcf 7de17d51fd78d0ad7f9774ffaefe8b84 { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-01461.RNA-Seq.transcriptome.T.hg38 C3L-01461 CCRCC RNA-Seq tumor CPT0390120009 be253974-ebfe-4198-954c-7e1db48f6b1a.rna_seq.transcriptome.gdc_realn.bam 13077757305 BAM transcriptome harmonized CPTAC3 0ba97631-fea9-4dcf-8e63-36e12115f325 3de3bbe0ba018509ec8aebbbdc870622 { 'aliquot_tag': 'ALQ_f6454042', 'gdc_sample_type': 'Primary Tumor' } C3L-01461.WGS.N C3L-01461 CCRCC WGS blood_normal CPT0390150002 CPT0390150002.WholeGenome.RP-2158.bam 30115048116 BAM aligned CPTAC3 e1c7c94c-53d8-44b0-8c38-d19133acdef1 dc260b4737642f570dcc6b02b5986ee0 { 'aliquot_tag': 'ALQ_d3b745da', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01461.WGS.N.hg38 C3L-01461 CCRCC WGS blood_normal CPT0390150002 ca4a04a0-4e64-4d60-9f0f-fabe7756fdb3_wgs_gdc_realn.bam 91707793151 BAM harmonized CPTAC3 81901f2a-f293-4c5f-8af0-b7cd5481e3fe d64cda4e26b7539675a180454ede22c3 { 'aliquot_tag': 'ALQ_d3b745da', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01461.WGS.T C3L-01461 CCRCC WGS tumor CPT0390120006 CPT0390120006.WholeGenome.RP-2158.bam 42988952501 BAM aligned CPTAC3 ace67552-c0a4-461b-b2dd-76292ea8106e 031268e0fff39cb79559cc8c12bc661e { 'aliquot_tag': 'ALQ_66fa5dd3', 'gdc_sample_type': 'Primary Tumor' } @@ -7107,16 +7746,16 @@ C3L-01462.miRNA-Seq.A C3L-01462 CCRCC miRNA-Seq tissue_normal CPT0085920009 1811 C3L-01462.miRNA-Seq.A.hg38 C3L-01462 CCRCC miRNA-Seq tissue_normal CPT0085920009 91f2cf9c-a3bd-4cb0-816d-9bc85db47e5f_mirnaseq_gdc_realn.bam 290454430 BAM harmonized CPTAC3 1ac44bc3-897a-47c6-8883-b374d35763ee 9a6e55266cc9a52ff31b340a25299557 { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01462.miRNA-Seq.T C3L-01462 CCRCC miRNA-Seq tumor CPT0085910006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGATC_S7_L008_R1_001.unaln.bam 208347610 BAM unaligned CPTAC3 001169ab-0092-4b70-9b28-219ccbf41e91 153d9b28e255c5bf369f78a9d811e46c { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor' } C3L-01462.miRNA-Seq.T.hg38 C3L-01462 CCRCC miRNA-Seq tumor CPT0085910006 50c13503-4e56-4ddb-86ac-9e08bbbe7601_mirnaseq_gdc_realn.bam 232216587 BAM harmonized CPTAC3 020eca9b-f121-42c5-ba31-e19dd7aa7124 bae759fb572165d8588ff16a63bc3ee8 { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor' } -C3L-01462.RNA-Seq.chimeric.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 134b2e02-c68e-406a-950a-91852d23c88f.rna_seq.chimeric.gdc_realn.bam 32033327 BAM chimeric harmonized CPTAC3 fe7c009d-e3db-4547-9bce-91369efcb785 86acaaca05738f928a273ea16b3daad1 { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01462.RNA-Seq.chimeric.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 3d9fb641-d223-4780-82de-2f2e1cb9b771.rna_seq.chimeric.gdc_realn.bam 29197348 BAM chimeric harmonized CPTAC3 064725d1-494c-40c7-9869-7a61fd06aa5d a922faf5b583266e3fc5bc694f79d386 { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor' } -C3L-01462.RNA-Seq.genomic.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 134b2e02-c68e-406a-950a-91852d23c88f.rna_seq.genomic.gdc_realn.bam 8583965040 BAM genomic harmonized CPTAC3 0cbb6141-3bf8-457f-8d46-d670819aa024 130de0de398ab725992bb3f9ca295837 { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01462.RNA-Seq.genomic.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 3d9fb641-d223-4780-82de-2f2e1cb9b771.rna_seq.genomic.gdc_realn.bam 6150340142 BAM genomic harmonized CPTAC3 40e32a4e-a3c5-4ecc-9777-53df29740f37 e4f575f9e4c9f19d816671071a0bfd0a { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor' } -C3L-01462.RNA-Seq.R1_L001.T C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L001_R1_001.fastq.gz 3212761487 FASTQ R1_L001 unaligned CPTAC3 a8022275-c8f1-46ed-be4f-0421566af10f 177782413bda1c5604a4098108537834 { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor' } -C3L-01462.RNA-Seq.R1_L002.A C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L002_R1_001.fastq.gz 3861104781 FASTQ R1_L002 unaligned CPTAC3 f5114053-a779-46ef-a9b4-a54f9bd0e2cf 8163b7292ea6d408e4c2a8e8b0e54dc7 { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01462.RNA-Seq.R2_L001.T C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L001_R2_001.fastq.gz 3534510896 FASTQ R2_L001 unaligned CPTAC3 ee816a7e-c352-4b0c-9def-97ee54d8a321 8bc16895ad6f44d6543493fb120f0010 { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor' } -C3L-01462.RNA-Seq.R2_L002.A C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L002_R2_001.fastq.gz 4324001669 FASTQ R2_L002 unaligned CPTAC3 bce94f76-62a9-470e-80b7-d4dec77a27ac fa5e5b97e34b7c7d229f4487a450163c { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01462.RNA-Seq.transcriptome.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 134b2e02-c68e-406a-950a-91852d23c88f.rna_seq.transcriptome.gdc_realn.bam 9406255190 BAM transcriptome harmonized CPTAC3 6b60576d-d18e-459a-86c4-ead54ba40679 385d205b754933fce3095d6a56ca8ab5 { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01462.RNA-Seq.transcriptome.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 3d9fb641-d223-4780-82de-2f2e1cb9b771.rna_seq.transcriptome.gdc_realn.bam 7621769302 BAM transcriptome harmonized CPTAC3 8b43a7ec-87d7-4ef1-b90d-1a989d85ad74 6f15183c9d824b329ef4ba14c692821f { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor' } +C3L-01462.RNA-Seq.chimeric.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 ad7b40d9-56f6-4fd6-ac42-a2de587ddd61.rna_seq.chimeric.gdc_realn.bam 32018835 BAM chimeric harmonized CPTAC3 9a49be90-675c-4a89-8b9d-018164974e71 7ced1d268b45d884286d330c1abe2a78 { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01462.RNA-Seq.chimeric.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 6776be3b-c72e-4c40-9afc-cd750700bf5c.rna_seq.chimeric.gdc_realn.bam 29178606 BAM chimeric harmonized CPTAC3 5a371033-9b4b-4cd7-a1dc-e172cbe95b30 805f3d3befb1a342ad43a389c6fe6341 { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor' } +C3L-01462.RNA-Seq.genomic.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 ad7b40d9-56f6-4fd6-ac42-a2de587ddd61.rna_seq.genomic.gdc_realn.bam 8584848822 BAM genomic harmonized CPTAC3 65566e6e-c747-44a7-9843-5f802ff1415a 43bef0cf0c9e38c49721d7500ffbb613 { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01462.RNA-Seq.genomic.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 6776be3b-c72e-4c40-9afc-cd750700bf5c.rna_seq.genomic.gdc_realn.bam 6151467388 BAM genomic harmonized CPTAC3 f32a6c26-c4df-4a9a-b9e5-4c4b256ea7c6 35c3221afb3ceb79543b75647fad7f83 { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor' } +C3L-01462.RNA-Seq.R1_L001.T C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L001_R1_001.fastq.gz 3212761487 FASTQ R1_L001 unaligned CPTAC3 a8022275-c8f1-46ed-be4f-0421566af10f 177782413bda1c5604a4098108537834 { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01462.RNA-Seq.R1_L002.A C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L002_R1_001.fastq.gz 3861104781 FASTQ R1_L002 unaligned CPTAC3 f5114053-a779-46ef-a9b4-a54f9bd0e2cf 8163b7292ea6d408e4c2a8e8b0e54dc7 { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01462.RNA-Seq.R2_L001.T C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L001_R2_001.fastq.gz 3534510896 FASTQ R2_L001 unaligned CPTAC3 ee816a7e-c352-4b0c-9def-97ee54d8a321 8bc16895ad6f44d6543493fb120f0010 { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01462.RNA-Seq.R2_L002.A C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L002_R2_001.fastq.gz 4324001669 FASTQ R2_L002 unaligned CPTAC3 bce94f76-62a9-470e-80b7-d4dec77a27ac fa5e5b97e34b7c7d229f4487a450163c { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01462.RNA-Seq.transcriptome.A.hg38 C3L-01462 CCRCC RNA-Seq tissue_normal CPT0085920009 ad7b40d9-56f6-4fd6-ac42-a2de587ddd61.rna_seq.transcriptome.gdc_realn.bam 10778072042 BAM transcriptome harmonized CPTAC3 26faa851-47dc-4857-bf2f-e7816c70a5d8 1af46bbe4bf146f71d540fae0d65a184 { 'aliquot_tag': 'ALQ_bd09d1d3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01462.RNA-Seq.transcriptome.T.hg38 C3L-01462 CCRCC RNA-Seq tumor CPT0085910006 6776be3b-c72e-4c40-9afc-cd750700bf5c.rna_seq.transcriptome.gdc_realn.bam 8608448961 BAM transcriptome harmonized CPTAC3 56f2e984-4a86-481a-90dd-00de2aafb5dd 4a29b7492ed2ef1b7f8ad6621fe514b0 { 'aliquot_tag': 'ALQ_6a16b692', 'gdc_sample_type': 'Primary Tumor' } C3L-01462.WGS.A C3L-01462 CCRCC WGS tissue_normal CPT0085920006 CPT0085920006.WholeGenome.RP-1303.bam 68955077857 BAM aligned CPTAC3 8a8dae8d-e22b-42e3-9eef-e642fbd64da0 fa0d417303c1c93ca71a1172a26b8c3d { 'aliquot_tag': 'ALQ_2db6cc42', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01462.WGS.A.hg38 C3L-01462 CCRCC WGS tissue_normal CPT0085920006 cf413cfe-d871-4dc4-88b0-42d82a1aaea2_wgs_gdc_realn.bam 100860850101 BAM harmonized CPTAC3 0a54d990-6fe2-40ca-afc2-5df1c3f8ef65 268c9de26d10e2fb46bfcc6412c2b9c9 { 'aliquot_tag': 'ALQ_2db6cc42', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01462.WGS.N C3L-01462 CCRCC WGS blood_normal CPT0086690002 CPT0086690002.WholeGenome.RP-1303.bam 69593254605 BAM aligned CPTAC3 f7012e04-e836-4f8f-8f8b-8e625c7a3331 53d8019f77d502049b255ab1b007dbbe { 'aliquot_tag': 'ALQ_9db59102', 'gdc_sample_type': 'Blood Derived Normal' } @@ -7133,11 +7772,11 @@ C3L-01463.MethArray.Green.T C3L-01463 CCRCC Methylation Array tumor CPT038991000 C3L-01463.MethArray.Red.T C3L-01463 CCRCC Methylation Array tumor CPT0389910006 205549600088_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 07f2f382-60ae-4850-90c0-0bc3cb2ee998 d2f05630cbe1b662041742aee07d7e17 { 'aliquot_tag': 'ALQ_943be023', 'gdc_sample_type': 'Primary Tumor' } C3L-01463.miRNA-Seq.T C3L-01463 CCRCC miRNA-Seq tumor CPT0389910009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CATGGC_S24_L002_R1_001.unaln.bam 227444146 BAM unaligned CPTAC3 6f165cb3-c803-4a07-b597-e81c7496198d 060495a5b26a32ae00dc8004b920b00c { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor' } C3L-01463.miRNA-Seq.T.hg38 C3L-01463 CCRCC miRNA-Seq tumor CPT0389910009 3ed4f5fa-2dc6-42b3-afbf-c5b57dcb36f8_mirnaseq_gdc_realn.bam 242281242 BAM harmonized CPTAC3 727f5038-9b36-4715-80f2-659cb3bf5a45 54785c9329c1ebdd0c70f8b9377ca10a { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01463.RNA-Seq.chimeric.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 c9602820-11c4-4055-a6d2-f9ada3c9a8bc.rna_seq.chimeric.gdc_realn.bam 449394249 BAM chimeric harmonized CPTAC3 d4b30e43-1b11-4f56-83b9-db439e874e80 8ba5e849b84ad734ec3f0472ca5598a5 { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01463.RNA-Seq.genomic.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 c9602820-11c4-4055-a6d2-f9ada3c9a8bc.rna_seq.genomic.gdc_realn.bam 8480573140 BAM genomic harmonized CPTAC3 f6f9d133-1ef9-40f9-ad15-97f2f8d7d1b0 033181e1d8ae44afd50999fffbae002a { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01463.RNA-Seq.R1_L001.T C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 210105_UNC32-K00270_0269_BHKN5MBBXY_CGTTAGAA-TTCAGGTC_S2_L001_R1_001.fastq.gz 3991979989 FASTQ R1_L001 unaligned CPTAC3 5a7080ad-235d-4cec-9d79-7730f6d35e84 c532d4fcd52808ed04dba0149612d9a3 { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01463.RNA-Seq.R2_L001.T C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 210105_UNC32-K00270_0269_BHKN5MBBXY_CGTTAGAA-TTCAGGTC_S2_L001_R2_001.fastq.gz 4584028673 FASTQ R2_L001 unaligned CPTAC3 cd19d919-00ce-4cf7-b2a5-6e277a4f9cf4 60ae278e23693155793b7df348a41d6f { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01463.RNA-Seq.transcriptome.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 c9602820-11c4-4055-a6d2-f9ada3c9a8bc.rna_seq.transcriptome.gdc_realn.bam 9394164165 BAM transcriptome harmonized CPTAC3 0faaa619-354d-4962-b096-805c3d2fb3b2 d3c45f7e709250a8365a41477648a41e { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01463.RNA-Seq.chimeric.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 877307e4-e16f-481d-891d-6990b6acb1e6.rna_seq.chimeric.gdc_realn.bam 449451682 BAM chimeric harmonized CPTAC3 e2f2ea20-20cc-46f3-ad56-fe9bbde310e7 6f6598bb541d07523b245afbd80b58ac { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01463.RNA-Seq.genomic.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 877307e4-e16f-481d-891d-6990b6acb1e6.rna_seq.genomic.gdc_realn.bam 8487329424 BAM genomic harmonized CPTAC3 1c432eb1-b099-4d18-adc7-d41f71ee2726 2df6d79ee9459daa2b6096c54099c1ec { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01463.RNA-Seq.R1_L001.T C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 210105_UNC32-K00270_0269_BHKN5MBBXY_CGTTAGAA-TTCAGGTC_S2_L001_R1_001.fastq.gz 3991979989 FASTQ R1_L001 unaligned CPTAC3 5a7080ad-235d-4cec-9d79-7730f6d35e84 c532d4fcd52808ed04dba0149612d9a3 { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01463.RNA-Seq.R2_L001.T C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 210105_UNC32-K00270_0269_BHKN5MBBXY_CGTTAGAA-TTCAGGTC_S2_L001_R2_001.fastq.gz 4584028673 FASTQ R2_L001 unaligned CPTAC3 cd19d919-00ce-4cf7-b2a5-6e277a4f9cf4 60ae278e23693155793b7df348a41d6f { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01463.RNA-Seq.transcriptome.T.hg38 C3L-01463 CCRCC RNA-Seq tumor CPT0389910009 877307e4-e16f-481d-891d-6990b6acb1e6.rna_seq.transcriptome.gdc_realn.bam 10771862448 BAM transcriptome harmonized CPTAC3 bc2218e0-aeb9-4ea5-89c5-c49384c13720 945368986449e5e0a791f9de724b5d05 { 'aliquot_tag': 'ALQ_484fdb2', 'gdc_sample_type': 'Primary Tumor' } C3L-01463.WGS.N C3L-01463 CCRCC WGS blood_normal CPT0389940002 CPT0389940002.WholeGenome.RP-2158.bam 30188703362 BAM aligned CPTAC3 f395b1b2-c45a-486c-9309-52a2fd623ac2 2494f9d0212978537f2bb5f7355d5e2f { 'aliquot_tag': 'ALQ_5bb6ab4a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01463.WGS.N.hg38 C3L-01463 CCRCC WGS blood_normal CPT0389940002 a658bf66-1d71-4145-a226-364cde057592_wgs_gdc_realn.bam 91947223451 BAM harmonized CPTAC3 3e46fc89-f1a6-4e5b-90dc-3487fa9b40f3 53096321d158dde60c5e2795a7b17c7e { 'aliquot_tag': 'ALQ_5bb6ab4a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01463.WGS.T C3L-01463 CCRCC WGS tumor CPT0389910006 CPT0389910006.WholeGenome.RP-2158.bam 21643399483 BAM aligned CPTAC3 fec7d88b-4a6d-466a-9a84-7d6a97d34807 7c901270d365478fc6a1c9f870c28097 { 'aliquot_tag': 'ALQ_943be023', 'gdc_sample_type': 'Primary Tumor' } @@ -7152,16 +7791,16 @@ C3L-01464.miRNA-Seq.A C3L-01464 CCRCC miRNA-Seq tissue_normal CPT0085860009 1811 C3L-01464.miRNA-Seq.A.hg38 C3L-01464 CCRCC miRNA-Seq tissue_normal CPT0085860009 4bb5590a-11d4-4184-992a-f7358df31986_mirnaseq_gdc_realn.bam 280270146 BAM harmonized CPTAC3 04ed47e2-0ed4-4788-98c6-ffa575e82eb8 337c974285f746422a7348a300916b3c { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01464.miRNA-Seq.T C3L-01464 CCRCC miRNA-Seq tumor CPT0085850006 181108_UNC31-K00269_0163_BH23TVBBXY_GCCAAT_S6_L008_R1_001.unaln.bam 204616261 BAM unaligned CPTAC3 c8a88f19-1333-43ef-970d-ae2cf4c324af ae9aa70cde39bad74a0bfacc4eda42d0 { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor' } C3L-01464.miRNA-Seq.T.hg38 C3L-01464 CCRCC miRNA-Seq tumor CPT0085850006 597bbb20-01b4-482a-b1a0-446ca8aaf441_mirnaseq_gdc_realn.bam 228665363 BAM harmonized CPTAC3 22c178be-157b-483b-82c5-ba9057260b5f b0907e4b9a15d9222e4d95eb468f918e { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01464.RNA-Seq.chimeric.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 c9889d83-0d7e-4d72-b64a-62bcb932a128.rna_seq.chimeric.gdc_realn.bam 35610506 BAM chimeric harmonized CPTAC3 6896dcb9-55bb-4bde-9594-569973493d46 8479713f238e147c6b0b34690d1fcefd { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01464.RNA-Seq.chimeric.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 9f741fee-ced2-492b-b588-c3c95561399d.rna_seq.chimeric.gdc_realn.bam 31397406 BAM chimeric harmonized CPTAC3 55b7c902-fd2e-4096-920d-1cf5f2d63f95 1796fd333391ca0ef1defcb56c5b025e { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01464.RNA-Seq.genomic.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 c9889d83-0d7e-4d72-b64a-62bcb932a128.rna_seq.genomic.gdc_realn.bam 9470221664 BAM genomic harmonized CPTAC3 859e0d3b-3eb8-48f9-8480-0f8968f7989f 82fcf6672128cc107389e5785694acb9 { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01464.RNA-Seq.genomic.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 9f741fee-ced2-492b-b588-c3c95561399d.rna_seq.genomic.gdc_realn.bam 6768757421 BAM genomic harmonized CPTAC3 32b94132-4c41-40d0-980f-8ea0d6df97e9 062385cc10b05841ccde8400b963b0db { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01464.RNA-Seq.R1_L002.A C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L002_R1_001.fastq.gz 4352087275 FASTQ R1_L002 unaligned CPTAC3 fb0e7125-51da-4ad9-b07e-35cc204246d5 246fa6a4d862128dc9b4ab749a7495c7 { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01464.RNA-Seq.R1_L002.T C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L002_R1_001.fastq.gz 3433675698 FASTQ R1_L002 unaligned CPTAC3 9a39a5e4-189c-4f57-9095-2966a3eeb2ac 920386420aea91898d9aecab8637f4a2 { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01464.RNA-Seq.R2_L002.A C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L002_R2_001.fastq.gz 4861027895 FASTQ R2_L002 unaligned CPTAC3 9c383d87-d079-4963-aa4a-a0780b26f958 365c007f927af570e223f0e31df1541e { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01464.RNA-Seq.R2_L002.T C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L002_R2_001.fastq.gz 3793634944 FASTQ R2_L002 unaligned CPTAC3 267a5494-aa7e-40ba-9351-7ae0b2f86e48 cc4c51fa08288c4102fda5cc6e1abc7e { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01464.RNA-Seq.transcriptome.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 c9889d83-0d7e-4d72-b64a-62bcb932a128.rna_seq.transcriptome.gdc_realn.bam 10637228185 BAM transcriptome harmonized CPTAC3 8d8da5e0-1222-4149-b029-b38b2cae4f4b ed46c4413aa4c0a02eebea8559f55026 { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01464.RNA-Seq.transcriptome.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 9f741fee-ced2-492b-b588-c3c95561399d.rna_seq.transcriptome.gdc_realn.bam 8929541248 BAM transcriptome harmonized CPTAC3 b0742115-909d-4e30-a227-686919381ccb d9fd9c1c564d890a64cf0e7dd6600f41 { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01464.RNA-Seq.chimeric.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 4c6320c5-33ab-4333-aefb-def232fea69b.rna_seq.chimeric.gdc_realn.bam 35607866 BAM chimeric harmonized CPTAC3 e46ec14b-a29b-465e-b113-1dc9ad869817 b60395d998ecca159bf43345abc680f7 { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01464.RNA-Seq.chimeric.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 ebf543cb-675e-4347-ad5c-1454b959c056.rna_seq.chimeric.gdc_realn.bam 31387972 BAM chimeric harmonized CPTAC3 42035def-b36f-4fe8-ae71-54c4ca518073 4478167703a3aa71afbd25ad96ba92f3 { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01464.RNA-Seq.genomic.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 4c6320c5-33ab-4333-aefb-def232fea69b.rna_seq.genomic.gdc_realn.bam 9471288364 BAM genomic harmonized CPTAC3 ddaabd09-7a70-4dfd-9473-632f02a80b4a 3ba156da07543eaef456a92c93086b9d { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01464.RNA-Seq.genomic.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 ebf543cb-675e-4347-ad5c-1454b959c056.rna_seq.genomic.gdc_realn.bam 6769503083 BAM genomic harmonized CPTAC3 0c417f46-e5bd-4143-8cc9-828ffdb579f0 96bb51540b9e0bb9dee3958887943a2f { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01464.RNA-Seq.R1_L002.A C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L002_R1_001.fastq.gz 4352087275 FASTQ R1_L002 unaligned CPTAC3 fb0e7125-51da-4ad9-b07e-35cc204246d5 246fa6a4d862128dc9b4ab749a7495c7 { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01464.RNA-Seq.R1_L002.T C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L002_R1_001.fastq.gz 3433675698 FASTQ R1_L002 unaligned CPTAC3 9a39a5e4-189c-4f57-9095-2966a3eeb2ac 920386420aea91898d9aecab8637f4a2 { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01464.RNA-Seq.R2_L002.A C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L002_R2_001.fastq.gz 4861027895 FASTQ R2_L002 unaligned CPTAC3 9c383d87-d079-4963-aa4a-a0780b26f958 365c007f927af570e223f0e31df1541e { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01464.RNA-Seq.R2_L002.T C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L002_R2_001.fastq.gz 3793634944 FASTQ R2_L002 unaligned CPTAC3 267a5494-aa7e-40ba-9351-7ae0b2f86e48 cc4c51fa08288c4102fda5cc6e1abc7e { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01464.RNA-Seq.transcriptome.A.hg38 C3L-01464 CCRCC RNA-Seq tissue_normal CPT0085860009 4c6320c5-33ab-4333-aefb-def232fea69b.rna_seq.transcriptome.gdc_realn.bam 12179713533 BAM transcriptome harmonized CPTAC3 3f24d2df-e08e-4788-bf91-2f7949c69d0f 786e14af98bdc9247f02adc1d1d6913f { 'aliquot_tag': 'ALQ_83d5a4b6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01464.RNA-Seq.transcriptome.T.hg38 C3L-01464 CCRCC RNA-Seq tumor CPT0085850006 ebf543cb-675e-4347-ad5c-1454b959c056.rna_seq.transcriptome.gdc_realn.bam 10135239972 BAM transcriptome harmonized CPTAC3 6fe1e177-70d2-478a-8951-5d55bc8a4d3e e928a515ebaca6ee6dc9fbe51f84d1ff { 'aliquot_tag': 'ALQ_54cac3f7', 'gdc_sample_type': 'Primary Tumor' } C3L-01464.WGS.N C3L-01464 CCRCC WGS blood_normal CPT0086670002 CPT0086670002.WholeGenome.RP-1303.bam 72187580351 BAM aligned CPTAC3 5698916f-6992-45ef-ab48-6d2e39126e7c 0903aeccb08d1042c3095ed9b4d0b521 { 'aliquot_tag': 'ALQ_22852f63', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01464.WGS.N.hg38 C3L-01464 CCRCC WGS blood_normal CPT0086670002 49943e71-0b50-4e83-9188-24c2276c82b0_gdc_realn.bam 109870889316 BAM harmonized CPTAC3 1498828b-94e0-4ffe-a58b-e9dca8fedeb2 9c758c23f9a92ba1c053b598797f7d39 { 'aliquot_tag': 'ALQ_22852f63', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01464.WGS.T C3L-01464 CCRCC WGS tumor CPT0085850009 CPT0085850009.WholeGenome.RP-1303.bam 63899222677 BAM aligned CPTAC3 bdd2519e-8447-48f1-a4ff-ee9630f1667b 43504571019d6469d834bfc101dfd5bb { 'aliquot_tag': 'ALQ_c475de66', 'gdc_sample_type': 'Primary Tumor' } @@ -7174,11 +7813,11 @@ C3L-01465.MethArray.Green.T C3L-01465 CCRCC Methylation Array tumor CPT008579000 C3L-01465.MethArray.Red.T C3L-01465 CCRCC Methylation Array tumor CPT0085790009 202176290116_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 c61aa502-afbd-4b56-8551-7d111fa71a46 0c47fed04c6eaef3c9feb61d0accf61c { 'aliquot_tag': 'ALQ_f0d381b2', 'gdc_sample_type': 'Primary Tumor' } C3L-01465.miRNA-Seq.T C3L-01465 CCRCC miRNA-Seq tumor CPT0085790006 181108_UNC31-K00269_0163_BH23TVBBXY_ACAGTG_S5_L008_R1_001.unaln.bam 166602306 BAM unaligned CPTAC3 719561e5-8f90-44d4-bed1-9a1e6450a960 ee839f188cf5731c2ae257942f70bce7 { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor' } C3L-01465.miRNA-Seq.T.hg38 C3L-01465 CCRCC miRNA-Seq tumor CPT0085790006 b25d4c2b-2259-4c39-a55e-960823f1b8b2_mirnaseq_gdc_realn.bam 181743265 BAM harmonized CPTAC3 8ab15484-5389-4724-966a-b6f8e84668b7 22e10ab921428ef517c19bd23ee0c7bb { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor' } -C3L-01465.RNA-Seq.chimeric.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 c93f6657-c35c-444f-8fd0-6435bd78395c.rna_seq.chimeric.gdc_realn.bam 30456078 BAM chimeric harmonized CPTAC3 c1b5ca63-9ae9-47ac-a5c7-8f48d075bb58 bd1672950a6be3d71e3bcc3d1f695411 { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor' } -C3L-01465.RNA-Seq.genomic.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 c93f6657-c35c-444f-8fd0-6435bd78395c.rna_seq.genomic.gdc_realn.bam 7107326329 BAM genomic harmonized CPTAC3 9148b65f-0f5b-491b-8712-e524175caadc 3c36ab328f7e398049e1089fad24c7cf { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor' } -C3L-01465.RNA-Seq.R1_L002.T C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L002_R1_001.fastq.gz 3582870850 FASTQ R1_L002 unaligned CPTAC3 157eba3a-9261-4bc0-a5b6-778d0ef4015a 9419e25aaff5db7a3323ea91e9abee05 { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor' } -C3L-01465.RNA-Seq.R2_L002.T C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L002_R2_001.fastq.gz 3964297654 FASTQ R2_L002 unaligned CPTAC3 a125db0a-87a5-4799-b24e-87cd8a248114 e697eb5b3064587f3d8002686f712e14 { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor' } -C3L-01465.RNA-Seq.transcriptome.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 c93f6657-c35c-444f-8fd0-6435bd78395c.rna_seq.transcriptome.gdc_realn.bam 8880236460 BAM transcriptome harmonized CPTAC3 cc5d04c7-5180-4e1c-97ac-34479b7cd49d 741cc59b39484e43afa93e7bf8f06977 { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor' } +C3L-01465.RNA-Seq.chimeric.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 17253872-c862-40bf-8f9b-b2cad690ccd8.rna_seq.chimeric.gdc_realn.bam 30447079 BAM chimeric harmonized CPTAC3 d8c7e438-1547-49a7-9f49-f342855f2748 ea9098762fa0f99b811d7c66fac900d2 { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor' } +C3L-01465.RNA-Seq.genomic.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 17253872-c862-40bf-8f9b-b2cad690ccd8.rna_seq.genomic.gdc_realn.bam 7109623545 BAM genomic harmonized CPTAC3 e504fd4f-7542-498a-aa49-be26c2f7a243 46e7d5ccc475806174c0b5b9ab481ece { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor' } +C3L-01465.RNA-Seq.R1_L002.T C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L002_R1_001.fastq.gz 3582870850 FASTQ R1_L002 unaligned CPTAC3 157eba3a-9261-4bc0-a5b6-778d0ef4015a 9419e25aaff5db7a3323ea91e9abee05 { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01465.RNA-Seq.R2_L002.T C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L002_R2_001.fastq.gz 3964297654 FASTQ R2_L002 unaligned CPTAC3 a125db0a-87a5-4799-b24e-87cd8a248114 e697eb5b3064587f3d8002686f712e14 { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01465.RNA-Seq.transcriptome.T.hg38 C3L-01465 CCRCC RNA-Seq tumor CPT0085790006 17253872-c862-40bf-8f9b-b2cad690ccd8.rna_seq.transcriptome.gdc_realn.bam 9958219909 BAM transcriptome harmonized CPTAC3 42b91cac-15ad-4391-88d9-046808b23dfe 24dcf36b20961c423a79d234c8afecef { 'aliquot_tag': 'ALQ_606c9c23', 'gdc_sample_type': 'Primary Tumor' } C3L-01465.WGS.N C3L-01465 CCRCC WGS blood_normal CPT0086650002 CPT0086650002.WholeGenome.RP-1303.bam 71131354301 BAM aligned CPTAC3 b05dd77d-34ae-4616-a386-57e1ba2a9849 8ab3463e3a9c15795f5cfa55060776ec { 'aliquot_tag': 'ALQ_58457c03', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01465.WGS.N.hg38 C3L-01465 CCRCC WGS blood_normal CPT0086650002 7637521b-2766-41f0-a52a-ee21470742f8_gdc_realn.bam 107003199874 BAM harmonized CPTAC3 93b7d297-0402-49c4-9e9b-7d042bdf0835 734e53083a85c091640be007641ce3fe { 'aliquot_tag': 'ALQ_58457c03', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01465.WGS.T C3L-01465 CCRCC WGS tumor CPT0085790009 CPT0085790009.WholeGenome.RP-1303.bam 60889121893 BAM aligned CPTAC3 b7549863-fad3-4bcb-b025-5fbd91bbee87 9a4a60a8f9dabefbf88af51b678aba4c { 'aliquot_tag': 'ALQ_f0d381b2', 'gdc_sample_type': 'Primary Tumor' } @@ -7193,16 +7832,16 @@ C3L-01467.miRNA-Seq.A C3L-01467 CCRCC miRNA-Seq tissue_normal CPT0390050005 2101 C3L-01467.miRNA-Seq.A.hg38 C3L-01467 CCRCC miRNA-Seq tissue_normal CPT0390050005 0fdb2983-e3c7-45fe-b73b-b536aa47b225_mirnaseq_gdc_realn.bam 315260295 BAM harmonized CPTAC3 b8fe47f6-872a-40e0-937d-d37b2e71d22c fc48ee52509f428d13fe5578896250b5 { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01467.miRNA-Seq.T C3L-01467 CCRCC miRNA-Seq tumor CPT0390040009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CCAACA_S26_L002_R1_001.unaln.bam 195288244 BAM unaligned CPTAC3 6341bdc9-d815-46e0-96a5-c63b4525a4d2 2951c8d6598ad68b5061137b6311980b { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor' } C3L-01467.miRNA-Seq.T.hg38 C3L-01467 CCRCC miRNA-Seq tumor CPT0390040009 e3ef9cf7-a65f-4135-b87f-c23e9de7698d_mirnaseq_gdc_realn.bam 208245230 BAM harmonized CPTAC3 2b4f0c0c-3265-4cd2-98c4-a02a748d1bc3 541886a29903f1c24be8a004d35f2a18 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor' } -C3L-01467.RNA-Seq.chimeric.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 f9cd2b1c-4f6d-4d6e-b009-0debaa5db9f1.rna_seq.chimeric.gdc_realn.bam 142217224 BAM chimeric harmonized CPTAC3 3c62f5f0-a171-47ce-8005-ab5fc531085a ac791362efb37de9e66a633b49e120f1 { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01467.RNA-Seq.chimeric.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 13e4197a-22d4-4e59-9ec0-9f73a7009195.rna_seq.chimeric.gdc_realn.bam 276055543 BAM chimeric harmonized CPTAC3 a16a6dfe-f873-40da-b2f3-8b65ac889ec3 8051143254c9a3f9a4a33ca8b61b3597 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor' } -C3L-01467.RNA-Seq.genomic.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 f9cd2b1c-4f6d-4d6e-b009-0debaa5db9f1.rna_seq.genomic.gdc_realn.bam 7845309757 BAM genomic harmonized CPTAC3 db65c874-2302-43a1-a882-cb000449304b c2f843e2db32a42f87d07771b18e2252 { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01467.RNA-Seq.genomic.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 13e4197a-22d4-4e59-9ec0-9f73a7009195.rna_seq.genomic.gdc_realn.bam 6316558261 BAM genomic harmonized CPTAC3 c829302a-c189-46a1-a325-c8c336055ad1 1b4456014f7cf14aea9c72f2eec73042 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor' } -C3L-01467.RNA-Seq.R1_L001.T C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 210105_UNC32-K00270_0269_BHKN5MBBXY_GATTCTGC-GACGAGAG_S3_L001_R1_001.fastq.gz 3034562105 FASTQ R1_L001 unaligned CPTAC3 57e34763-07a5-43f4-ba53-dade7666af99 970d0cb99b1e5acae1cee63791ad4bd0 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor' } -C3L-01467.RNA-Seq.R1_L008.A C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 210105_UNC32-K00270_0268_AHK7HMBBXY_CTACGACA-GAGTCCAA_S27_L008_R1_001.fastq.gz 3268952339 FASTQ R1_L008 unaligned CPTAC3 3a0120b5-e773-43d4-8328-608c5be239f3 50805782a013a9cdf71598097f8d2249 { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01467.RNA-Seq.R2_L001.T C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 210105_UNC32-K00270_0269_BHKN5MBBXY_GATTCTGC-GACGAGAG_S3_L001_R2_001.fastq.gz 3413737915 FASTQ R2_L001 unaligned CPTAC3 7c5f4de5-8492-4b48-a285-86cfb5ec1c64 eed8622986b7cfa85b023bf933123d22 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor' } -C3L-01467.RNA-Seq.R2_L008.A C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 210105_UNC32-K00270_0268_AHK7HMBBXY_CTACGACA-GAGTCCAA_S27_L008_R2_001.fastq.gz 3821259301 FASTQ R2_L008 unaligned CPTAC3 b852f3ee-407f-4d93-b0a5-c9f0ab8ad7a9 870353d5da9bf80fd527b3e13da89bf9 { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01467.RNA-Seq.transcriptome.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 f9cd2b1c-4f6d-4d6e-b009-0debaa5db9f1.rna_seq.transcriptome.gdc_realn.bam 7568659001 BAM transcriptome harmonized CPTAC3 16e411b8-4e95-4bbc-a263-2f26619cb096 c9c1d21e0bc8d8fc49788cc8d787c49a { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01467.RNA-Seq.transcriptome.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 13e4197a-22d4-4e59-9ec0-9f73a7009195.rna_seq.transcriptome.gdc_realn.bam 6975517335 BAM transcriptome harmonized CPTAC3 73378491-20a0-4d2b-b38b-a33c184bf846 8ef1772cd8ea438f43671abf5f7e8040 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor' } +C3L-01467.RNA-Seq.chimeric.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 14fee8ec-3c9b-465d-94ae-d6cad38109fa.rna_seq.chimeric.gdc_realn.bam 142207145 BAM chimeric harmonized CPTAC3 3821acbb-c54d-4c11-9d94-9055b9c565fa 3c252fdfac499a96e513b92d5a3f6ff9 { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01467.RNA-Seq.chimeric.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 77fdb4c7-ad1f-4e94-a607-d716f9a790b5.rna_seq.chimeric.gdc_realn.bam 276061689 BAM chimeric harmonized CPTAC3 bbdcb953-4bb0-419b-b279-1ca4b5fa6ff5 9a6ed9527dcb1f68cf0d6edc34bc9635 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor' } +C3L-01467.RNA-Seq.genomic.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 14fee8ec-3c9b-465d-94ae-d6cad38109fa.rna_seq.genomic.gdc_realn.bam 7854810328 BAM genomic harmonized CPTAC3 90c2c56b-8957-4d56-9a5a-1bfdb058b22f 19ed9cb10f031dfb4dc7f08ed1874d10 { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01467.RNA-Seq.genomic.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 77fdb4c7-ad1f-4e94-a607-d716f9a790b5.rna_seq.genomic.gdc_realn.bam 6322300556 BAM genomic harmonized CPTAC3 ef8ce927-5591-495f-96be-0d71f0e89af3 f2e07ad85499701761453b99df544f15 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor' } +C3L-01467.RNA-Seq.R1_L001.T C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 210105_UNC32-K00270_0269_BHKN5MBBXY_GATTCTGC-GACGAGAG_S3_L001_R1_001.fastq.gz 3034562105 FASTQ R1_L001 unaligned CPTAC3 57e34763-07a5-43f4-ba53-dade7666af99 970d0cb99b1e5acae1cee63791ad4bd0 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01467.RNA-Seq.R1_L008.A C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 210105_UNC32-K00270_0268_AHK7HMBBXY_CTACGACA-GAGTCCAA_S27_L008_R1_001.fastq.gz 3268952339 FASTQ R1_L008 unaligned CPTAC3 3a0120b5-e773-43d4-8328-608c5be239f3 50805782a013a9cdf71598097f8d2249 { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-01467.RNA-Seq.R2_L001.T C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 210105_UNC32-K00270_0269_BHKN5MBBXY_GATTCTGC-GACGAGAG_S3_L001_R2_001.fastq.gz 3413737915 FASTQ R2_L001 unaligned CPTAC3 7c5f4de5-8492-4b48-a285-86cfb5ec1c64 eed8622986b7cfa85b023bf933123d22 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01467.RNA-Seq.R2_L008.A C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 210105_UNC32-K00270_0268_AHK7HMBBXY_CTACGACA-GAGTCCAA_S27_L008_R2_001.fastq.gz 3821259301 FASTQ R2_L008 unaligned CPTAC3 b852f3ee-407f-4d93-b0a5-c9f0ab8ad7a9 870353d5da9bf80fd527b3e13da89bf9 { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-01467.RNA-Seq.transcriptome.A.hg38 C3L-01467 CCRCC RNA-Seq tissue_normal CPT0390050005 14fee8ec-3c9b-465d-94ae-d6cad38109fa.rna_seq.transcriptome.gdc_realn.bam 8552369332 BAM transcriptome harmonized CPTAC3 7be9299c-dbf9-4fac-b5c4-81ec131df495 3bf1cedad1c6436fd56df023a178cbab { 'aliquot_tag': 'ALQ_868f03dc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01467.RNA-Seq.transcriptome.T.hg38 C3L-01467 CCRCC RNA-Seq tumor CPT0390040009 77fdb4c7-ad1f-4e94-a607-d716f9a790b5.rna_seq.transcriptome.gdc_realn.bam 7995471615 BAM transcriptome harmonized CPTAC3 2fbf54da-25fd-4837-a8eb-7445e012113b 3c0789dce8f71e1d18468e0446aede21 { 'aliquot_tag': 'ALQ_b2596647', 'gdc_sample_type': 'Primary Tumor' } C3L-01467.WGS.N C3L-01467 CCRCC WGS blood_normal CPT0390100002 CPT0390100002.WholeGenome.RP-2158.bam 23990076711 BAM aligned CPTAC3 8c86baec-7920-4697-93ea-433329756c00 420bbee15032655281670e7b1e71dcc9 { 'aliquot_tag': 'ALQ_1b57caaa', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01467.WGS.N.hg38 C3L-01467 CCRCC WGS blood_normal CPT0390100002 ef088a03-f3d5-4820-bc88-4836e07d98a4_wgs_gdc_realn.bam 73997069577 BAM harmonized CPTAC3 67827a64-47cf-4d3b-9c40-848baac6bce7 4c6cb4b7a61d691fc13ae8c3cbeb7d8b { 'aliquot_tag': 'ALQ_1b57caaa', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01467.WGS.T C3L-01467 CCRCC WGS tumor CPT0390040006 CPT0390040006.WholeGenome.RP-2158.bam 23708116710 BAM aligned CPTAC3 9f6cbe45-54a8-4b89-b4e7-f56634aff1a3 f4b1d1f59265922dfa5004373931e9f1 { 'aliquot_tag': 'ALQ_22e67bd6', 'gdc_sample_type': 'Primary Tumor' } @@ -7215,11 +7854,11 @@ C3L-01469.MethArray.Green.T C3L-01469 CCRCC Methylation Array tumor CPT038996000 C3L-01469.MethArray.Red.T C3L-01469 CCRCC Methylation Array tumor CPT0389960006 205555390118_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 bb3a613b-7585-497b-9126-5ebfbe237ebd e8bb1ead9ad41a34e6d8626695c7969d { 'aliquot_tag': 'ALQ_261b3c33', 'gdc_sample_type': 'Primary Tumor' } C3L-01469.miRNA-Seq.T C3L-01469 CCRCC miRNA-Seq tumor CPT0389960009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CATTTT_S25_L002_R1_001.unaln.bam 313865480 BAM unaligned CPTAC3 fb48fef1-a7e0-4bde-808a-c8816a4f42c9 af36f1abc6a8dfa0a21cb33d27bd6f6c { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor' } C3L-01469.miRNA-Seq.T.hg38 C3L-01469 CCRCC miRNA-Seq tumor CPT0389960009 53070b5a-b6ef-43cb-ae80-09ed97d059fa_mirnaseq_gdc_realn.bam 342368308 BAM harmonized CPTAC3 6ca7807a-e585-4fb0-ae94-c344e65fc34e 53caf9c0d6bd3c5cf2458ac61108b9d2 { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01469.RNA-Seq.chimeric.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 894c7593-00f9-49cd-bd26-ed404da18108.rna_seq.chimeric.gdc_realn.bam 349990298 BAM chimeric harmonized CPTAC3 1e8513bc-d18c-46cd-bdf1-eb2ce5c254f4 d4d6583604b16438f7078e6b5765bf0d { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01469.RNA-Seq.genomic.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 894c7593-00f9-49cd-bd26-ed404da18108.rna_seq.genomic.gdc_realn.bam 8712759605 BAM genomic harmonized CPTAC3 663e9b1b-1411-4d56-90f5-3dd35f71238f 444a5f83cac92e37b8b69ac3612a64cc { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01469.RNA-Seq.R1_L001.T C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 210105_UNC32-K00270_0269_BHKN5MBBXY_AGCCTCAT-AGTAGAGA_S1_L001_R1_001.fastq.gz 4226089393 FASTQ R1_L001 unaligned CPTAC3 faac51ac-ce75-4211-be32-823eccae23b7 d96f217fc43b7905a9e1d3a711fe1d09 { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01469.RNA-Seq.R2_L001.T C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 210105_UNC32-K00270_0269_BHKN5MBBXY_AGCCTCAT-AGTAGAGA_S1_L001_R2_001.fastq.gz 4704241839 FASTQ R2_L001 unaligned CPTAC3 50ffd64f-4028-4dd2-b0b4-1101ccfdbc75 6b33d1e85274580fab92a553fc8931c5 { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01469.RNA-Seq.transcriptome.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 894c7593-00f9-49cd-bd26-ed404da18108.rna_seq.transcriptome.gdc_realn.bam 10029084400 BAM transcriptome harmonized CPTAC3 a4327baf-37a7-4706-a794-621d516b9205 049a7018c4fedf9852105e88bb8c9fb6 { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01469.RNA-Seq.chimeric.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 7bbc5701-0687-41e9-b70a-c80988f21f3f.rna_seq.chimeric.gdc_realn.bam 350046696 BAM chimeric harmonized CPTAC3 91fcfdbb-c615-4bb4-ad40-b5a965d31b5d c776af278b888c7ece187c551c6d3ef9 { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01469.RNA-Seq.genomic.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 7bbc5701-0687-41e9-b70a-c80988f21f3f.rna_seq.genomic.gdc_realn.bam 8722053084 BAM genomic harmonized CPTAC3 40a1a365-79d3-4867-959e-3dad8a8ddd31 44a796bb6a4847d734fca5ead6498013 { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01469.RNA-Seq.R1_L001.T C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 210105_UNC32-K00270_0269_BHKN5MBBXY_AGCCTCAT-AGTAGAGA_S1_L001_R1_001.fastq.gz 4226089393 FASTQ R1_L001 unaligned CPTAC3 faac51ac-ce75-4211-be32-823eccae23b7 d96f217fc43b7905a9e1d3a711fe1d09 { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01469.RNA-Seq.R2_L001.T C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 210105_UNC32-K00270_0269_BHKN5MBBXY_AGCCTCAT-AGTAGAGA_S1_L001_R2_001.fastq.gz 4704241839 FASTQ R2_L001 unaligned CPTAC3 50ffd64f-4028-4dd2-b0b4-1101ccfdbc75 6b33d1e85274580fab92a553fc8931c5 { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01469.RNA-Seq.transcriptome.T.hg38 C3L-01469 CCRCC RNA-Seq tumor CPT0389960009 7bbc5701-0687-41e9-b70a-c80988f21f3f.rna_seq.transcriptome.gdc_realn.bam 11528882076 BAM transcriptome harmonized CPTAC3 51e4693f-214f-44ab-b9a5-326d4b59ec7c 2819c7f02416bafef124f421566f8a49 { 'aliquot_tag': 'ALQ_b6a421a2', 'gdc_sample_type': 'Primary Tumor' } C3L-01469.WGS.N C3L-01469 CCRCC WGS blood_normal CPT0390020002 CPT0390020002.WholeGenome.RP-2158.bam 32850453077 BAM aligned CPTAC3 d798d145-0d37-4cd7-a6ff-1a90178a7b20 de5df9b56ac85c47b4889a945f86e625 { 'aliquot_tag': 'ALQ_aacb4a6f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01469.WGS.N.hg38 C3L-01469 CCRCC WGS blood_normal CPT0390020002 c4919502-2b51-4cfa-9567-c6e3a211db9c_wgs_gdc_realn.bam 98876399452 BAM harmonized CPTAC3 ad9572e1-9b79-492c-b977-cc80307f7251 006e1c1f87a9dc18abe3be4791f44938 { 'aliquot_tag': 'ALQ_aacb4a6f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01469.WGS.T C3L-01469 CCRCC WGS tumor CPT0389960006 CPT0389960006.WholeGenome.RP-2158.bam 21520810421 BAM aligned CPTAC3 2853c525-61b4-46e9-8e02-8a0193ad8844 b1eff032f4c4c827d27b6b14218ff9cc { 'aliquot_tag': 'ALQ_261b3c33', 'gdc_sample_type': 'Primary Tumor' } @@ -7232,11 +7871,11 @@ C3L-01470.MethArray.Green.T C3L-01470 CCRCC Methylation Array tumor CPT008558000 C3L-01470.MethArray.Red.T C3L-01470 CCRCC Methylation Array tumor CPT0085580009 202184900148_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 6abd0a90-4a0a-4bbe-b5ce-cd823dd377bf 62c0cd4521cac6433ea44459704a1202 { 'aliquot_tag': 'ALQ_807b0909', 'gdc_sample_type': 'Primary Tumor' } C3L-01470.miRNA-Seq.T C3L-01470 CCRCC miRNA-Seq tumor CPT0085580006 181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L008_R1_001.unaln.bam 215195902 BAM unaligned CPTAC3 780f34d5-751b-445a-ab41-9710245248e5 c71ed73dd86181d4303ad3299be50bda { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor' } C3L-01470.miRNA-Seq.T.hg38 C3L-01470 CCRCC miRNA-Seq tumor CPT0085580006 7d2010ed-2a00-4b43-9842-55711f93dfca_mirnaseq_gdc_realn.bam 241866693 BAM harmonized CPTAC3 6d7d13d9-1c87-4e95-bc78-def1e64a702e 68f6deff5695d4dc28dd977d3643ed71 { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor' } -C3L-01470.RNA-Seq.chimeric.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 f4017aea-c804-48ef-824c-a103c5dc50a9.rna_seq.chimeric.gdc_realn.bam 38241370 BAM chimeric harmonized CPTAC3 012a595b-c75b-4bf5-bf6d-ebcc855551c1 4e46be9d513d34305153e1237d180d5c { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor' } -C3L-01470.RNA-Seq.genomic.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 f4017aea-c804-48ef-824c-a103c5dc50a9.rna_seq.genomic.gdc_realn.bam 7503372257 BAM genomic harmonized CPTAC3 5035bc08-7bfd-4ca4-942c-f08d1e91058e 03a970d1a97e67ec0953b6f77c95afdf { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor' } -C3L-01470.RNA-Seq.R1_L003.T C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 170908_UNC31-K00269_0080_BHLJ52BBXX_TGACCA_S12_L003_R1_001.fastq.gz 3744221386 FASTQ R1_L003 unaligned CPTAC3 9759d0b4-497d-49dc-8200-22451570cf81 3b7053905860a23cfd9b81485c9982dc { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor' } -C3L-01470.RNA-Seq.R2_L003.T C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 170908_UNC31-K00269_0080_BHLJ52BBXX_TGACCA_S12_L003_R2_001.fastq.gz 3972253455 FASTQ R2_L003 unaligned CPTAC3 f769572b-2a4b-4b8e-8ff6-7b0a8a404c62 ba19d9523882db3ecc2e4d2708cd989d { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor' } -C3L-01470.RNA-Seq.transcriptome.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 f4017aea-c804-48ef-824c-a103c5dc50a9.rna_seq.transcriptome.gdc_realn.bam 8593216160 BAM transcriptome harmonized CPTAC3 151e389d-43f4-497a-a0a7-a7966b467786 aacc83bea576cd64047f19c3267df7a9 { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor' } +C3L-01470.RNA-Seq.chimeric.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 bd4ca7de-b046-451a-8a07-722f9b913222.rna_seq.chimeric.gdc_realn.bam 38223622 BAM chimeric harmonized CPTAC3 8f2b6cd2-8680-4f9c-895a-af871e70704f d49d6949ab48055297d0ff5dbd82036f { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor' } +C3L-01470.RNA-Seq.genomic.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 bd4ca7de-b046-451a-8a07-722f9b913222.rna_seq.genomic.gdc_realn.bam 7504186886 BAM genomic harmonized CPTAC3 1bb96681-6ef7-41e0-8605-8a47ce88d99a 0497b5e3d958cfff7ca04c75f9041808 { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor' } +C3L-01470.RNA-Seq.R1_L003.T C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 170908_UNC31-K00269_0080_BHLJ52BBXX_TGACCA_S12_L003_R1_001.fastq.gz 3744221386 FASTQ R1_L003 unaligned CPTAC3 9759d0b4-497d-49dc-8200-22451570cf81 3b7053905860a23cfd9b81485c9982dc { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01470.RNA-Seq.R2_L003.T C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 170908_UNC31-K00269_0080_BHLJ52BBXX_TGACCA_S12_L003_R2_001.fastq.gz 3972253455 FASTQ R2_L003 unaligned CPTAC3 f769572b-2a4b-4b8e-8ff6-7b0a8a404c62 ba19d9523882db3ecc2e4d2708cd989d { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01470.RNA-Seq.transcriptome.T.hg38 C3L-01470 CCRCC RNA-Seq tumor CPT0085580006 bd4ca7de-b046-451a-8a07-722f9b913222.rna_seq.transcriptome.gdc_realn.bam 9803460582 BAM transcriptome harmonized CPTAC3 19e35587-48bc-4f78-acb9-d1d2adea67d2 f1df9f1008c4eda20e1440a7f14974c3 { 'aliquot_tag': 'ALQ_10c41498', 'gdc_sample_type': 'Primary Tumor' } C3L-01470.WGS.N C3L-01470 CCRCC WGS blood_normal CPT0086570002 CPT0086570002.WholeGenome.RP-1303.bam 65595805215 BAM aligned CPTAC3 e93011d0-0dbd-4ec8-9c16-0e3eb738b6fe ed2b3e22bbe6fe582213fffc4a8ec6ff { 'aliquot_tag': 'ALQ_a4115dcd', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01470.WGS.N.hg38 C3L-01470 CCRCC WGS blood_normal CPT0086570002 8de44709-a946-4db7-b5da-59703abe93b4_gdc_realn.bam 99349797270 BAM harmonized CPTAC3 55ed3ee4-ba5f-4347-83d4-98e7d1cabcad 8be281239022adac1276a0c4b6d44511 { 'aliquot_tag': 'ALQ_a4115dcd', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01470.WGS.T C3L-01470 CCRCC WGS tumor CPT0085580009 CPT0085580009.WholeGenome.RP-1303.bam 82740323787 BAM aligned CPTAC3 17aa60d9-0a28-4a9a-bde3-255a85fac974 7cfe30688fe069edb0017206f112a468 { 'aliquot_tag': 'ALQ_807b0909', 'gdc_sample_type': 'Primary Tumor' } @@ -7249,11 +7888,11 @@ C3L-01551.MethArray.Green.T C3L-01551 SAR Methylation Array tumor CPT0065990009 C3L-01551.MethArray.Red.T C3L-01551 SAR Methylation Array tumor CPT0065990009 202178770008_R04C01_Red.idat 13676232 IDAT Red NA CPTAC3 9506ddfc-f635-408b-b094-2bc3c1ddc429 6b98e1cd6ed04c27ee2844a5d88b3fba { 'aliquot_tag': 'ALQ_df53f2f0', 'gdc_sample_type': 'Primary Tumor' } C3L-01551.miRNA-Seq.T C3L-01551 SAR miRNA-Seq tumor CPT0065990006 181119_UNC31-K00269_0165_AH27WCBBXY_GGCTAC_S35_L005_R1_001.unaln.bam 206071346 BAM unaligned CPTAC3 260d7dd8-d8eb-4bce-a60e-d97c177a87a9 9f1f14b77917970b37e19afaed9f9bec { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor' } C3L-01551.miRNA-Seq.T.hg38 C3L-01551 SAR miRNA-Seq tumor CPT0065990006 0ebe5e8f-e3b8-414c-a1c5-8db2fe6c6d25_mirnaseq_gdc_realn.bam 226969041 BAM harmonized CPTAC3 44f83934-4f5e-45bf-9dc7-d18e7d478d95 2867f20f691b20a7aae6a33a625632d8 { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01551.RNA-Seq.chimeric.T.hg38 C3L-01551 SAR RNA-Seq tumor CPT0065990006 2ea43019-0e3b-4a37-80da-1d5aa4a09b8c.rna_seq.chimeric.gdc_realn.bam 39699144 BAM chimeric harmonized CPTAC3 87953b5e-49f1-4e46-8c5b-80077b0e67d9 fd4c8ab20d73bf72e520677f04a5afc6 { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01551.RNA-Seq.genomic.T.hg38 C3L-01551 SAR RNA-Seq tumor CPT0065990006 2ea43019-0e3b-4a37-80da-1d5aa4a09b8c.rna_seq.genomic.gdc_realn.bam 10553618961 BAM genomic harmonized CPTAC3 f78efffa-2459-482d-afd3-b5ab7372136b f36be360725571a2cbfe6500a28e260e { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01551.RNA-Seq.R1_L001.T C3L-01551 SAR RNA-Seq tumor CPT0065990006 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L001_R1_001.fastq.gz 5249888911 FASTQ R1_L001 unaligned CPTAC3 ff5e5708-365a-4927-83f7-70759aa89987 ccd11b28315d5edcfe6e2317a73c5fc1 { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01551.RNA-Seq.R2_L001.T C3L-01551 SAR RNA-Seq tumor CPT0065990006 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L001_R2_001.fastq.gz 5722134170 FASTQ R2_L001 unaligned CPTAC3 697563d0-0d9a-4c1c-905c-dc351229b32c 69d438bb42663f4534ae0505636b84bb { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01551.RNA-Seq.transcriptome.T.hg38 C3L-01551 SAR RNA-Seq tumor CPT0065990006 2ea43019-0e3b-4a37-80da-1d5aa4a09b8c.rna_seq.transcriptome.gdc_realn.bam 15186067477 BAM transcriptome harmonized CPTAC3 597dae1d-e675-46d4-9236-2934e1a4803b 16837ef612cabbf45b04b8e39d5171e5 { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor' } +C3L-01551.RNA-Seq.chimeric.T.hg38 C3L-01551 SAR RNA-Seq tumor CPT0065990006 f1ab168c-fbcb-466b-82fb-a1411ee0983f.rna_seq.chimeric.gdc_realn.bam 39688911 BAM chimeric harmonized CPTAC3 4f2e6e07-2641-4b3d-9e66-c3c28aa17353 2fe98e2f9569297fcdfef31c98128be6 { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor' } +C3L-01551.RNA-Seq.genomic.T.hg38 C3L-01551 SAR RNA-Seq tumor CPT0065990006 f1ab168c-fbcb-466b-82fb-a1411ee0983f.rna_seq.genomic.gdc_realn.bam 10554855914 BAM genomic harmonized CPTAC3 8cd055f3-7b9a-400f-ab6b-674bd9d1f3e4 d14bc27ef681bf8a9b74d59fa30005e1 { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor' } +C3L-01551.RNA-Seq.R1_L001.T C3L-01551 SAR RNA-Seq tumor CPT0065990006 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L001_R1_001.fastq.gz 5249888911 FASTQ R1_L001 unaligned CPTAC3 ff5e5708-365a-4927-83f7-70759aa89987 ccd11b28315d5edcfe6e2317a73c5fc1 { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01551.RNA-Seq.R2_L001.T C3L-01551 SAR RNA-Seq tumor CPT0065990006 170828_UNC31-K00269_0077_AHLF33BBXX_GTCCGC_S1_L001_R2_001.fastq.gz 5722134170 FASTQ R2_L001 unaligned CPTAC3 697563d0-0d9a-4c1c-905c-dc351229b32c 69d438bb42663f4534ae0505636b84bb { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01551.RNA-Seq.transcriptome.T.hg38 C3L-01551 SAR RNA-Seq tumor CPT0065990006 f1ab168c-fbcb-466b-82fb-a1411ee0983f.rna_seq.transcriptome.gdc_realn.bam 17205781929 BAM transcriptome harmonized CPTAC3 43834d02-1ab9-40c2-b2e5-f70ccdb60212 d2a70ffafcf8e00378087a3a2ec57d86 { 'aliquot_tag': 'ALQ_4fecef61', 'gdc_sample_type': 'Primary Tumor' } C3L-01551.WGS.N C3L-01551 SAR WGS blood_normal CPT0067750002 CPT0067750002.WholeGenome.RP-1303.bam 89363629879 BAM aligned CPTAC3 0460a4a7-9f3b-4a51-a162-da86ab64298d 84c43624b1c8e3414177fb450c090c64 { 'aliquot_tag': 'ALQ_20e4b620', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01551.WGS.N.hg38 C3L-01551 SAR WGS blood_normal CPT0067750002 3f0e69ef-470c-4468-af37-1ca53b0ace1d_gdc_realn.bam 133832689701 BAM harmonized CPTAC3 18682737-cd6e-48bc-b5e0-9479eaa5a4cb 4516f09f738491642ef31a3152ce5093 { 'aliquot_tag': 'ALQ_20e4b620', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01551.WGS.T C3L-01551 SAR WGS tumor CPT0065990009 CPT0065990009.WholeGenome.RP-1303.bam 84747014737 BAM aligned CPTAC3 1e3fe6ea-a184-47aa-90e8-335f4bf31f9a cef353db1e40d5a975603fafb9aa90f5 { 'aliquot_tag': 'ALQ_df53f2f0', 'gdc_sample_type': 'Primary Tumor' } @@ -7267,9 +7906,9 @@ C3L-01553.MethArray.Red.T C3L-01553 CCRCC Methylation Array tumor CPT0065930009 C3L-01553.miRNA-Seq.T C3L-01553 CCRCC miRNA-Seq tumor CPT0065930006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L001_R1_001.unaln.bam 215893831 BAM unaligned CPTAC3 6862d8f3-bfd6-4c78-b2a3-131c6de57de9 13e8433429f29ab94dac732d96e1658a { 'aliquot_tag': 'ALQ_55cf7c0', 'gdc_sample_type': 'Primary Tumor' } C3L-01553.miRNA-Seq.T.hg38 C3L-01553 CCRCC miRNA-Seq tumor CPT0065930006 cf3e0964-5b63-4083-88be-e6b111e7a110_mirnaseq_gdc_realn.bam 239044225 BAM harmonized CPTAC3 80b98e17-edae-4854-895f-8e6e7603ac15 88373e9e5a219f682b6cc05123dbe0cc { 'aliquot_tag': 'ALQ_55cf7c0', 'gdc_sample_type': 'Primary Tumor' } C3L-01553.RNA-Seq.chimeric.T.hg38 C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 a331d1a4-64b5-4f58-a291-b5657a70f02c.rna_seq.chimeric.gdc_realn.bam 22312832 BAM chimeric harmonized CPTAC3 65cc76d9-4003-4bff-9d87-2e1ab9409f5b b42954bf5d75515a2429a7346c92297a { 'aliquot_tag': 'ALQ_55cf7c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01553.RNA-Seq.genomic.T.hg38 C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 a331d1a4-64b5-4f58-a291-b5657a70f02c.rna_seq.genomic.gdc_realn.bam 6317313849 BAM genomic harmonized CPTAC3 527a27b8-a871-4445-a4ee-a6545badb52b c014c47b8d5fa2fcc0ed4a75b895b853 { 'aliquot_tag': 'ALQ_55cf7c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01553.RNA-Seq.R1_L001.T C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L001_R1_001.fastq.gz 2898004043 FASTQ R1_L001 unaligned CPTAC3 88f1547d-1fe2-4d7f-b9d9-0e31082648e4 455fa6275226b7092eb689e41fe67cf2 { 'aliquot_tag': 'ALQ_55cf7c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-01553.RNA-Seq.R2_L001.T C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L001_R2_001.fastq.gz 3031203940 FASTQ R2_L001 unaligned CPTAC3 b95d6272-2af8-4cdb-8af2-3e30c8cca1fc 1ea0adf66c4b42d4e613a23494afde89 { 'aliquot_tag': 'ALQ_55cf7c0', 'gdc_sample_type': 'Primary Tumor' } +C3L-01553.RNA-Seq.genomic.T.hg38 C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 a331d1a4-64b5-4f58-a291-b5657a70f02c.rna_seq.genomic.gdc_realn.bam 6317313849 BAM genomic harmonized CPTAC3 39839e30-dc84-4973-b222-94b7d6f96582 c014c47b8d5fa2fcc0ed4a75b895b853 { 'aliquot_tag': 'ALQ_55cf7c0', 'gdc_sample_type': 'Primary Tumor' } +C3L-01553.RNA-Seq.R1_L001.T C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L001_R1_001.fastq.gz 2898004043 FASTQ R1_L001 unaligned CPTAC3 88f1547d-1fe2-4d7f-b9d9-0e31082648e4 455fa6275226b7092eb689e41fe67cf2 { 'aliquot_tag': 'ALQ_55cf7c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01553.RNA-Seq.R2_L001.T C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 170828_UNC31-K00269_0077_AHLF33BBXX_CCGTCC_S2_L001_R2_001.fastq.gz 3031203940 FASTQ R2_L001 unaligned CPTAC3 b95d6272-2af8-4cdb-8af2-3e30c8cca1fc 1ea0adf66c4b42d4e613a23494afde89 { 'aliquot_tag': 'ALQ_55cf7c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-01553.RNA-Seq.transcriptome.T.hg38 C3L-01553 CCRCC RNA-Seq tumor CPT0065930006 a331d1a4-64b5-4f58-a291-b5657a70f02c.rna_seq.transcriptome.gdc_realn.bam 9391726705 BAM transcriptome harmonized CPTAC3 49c53332-89a7-4e08-8b11-a501ef82e231 d73d0454c12e66cabd005a950b30252a { 'aliquot_tag': 'ALQ_55cf7c0', 'gdc_sample_type': 'Primary Tumor' } C3L-01553.WGS.N C3L-01553 CCRCC WGS blood_normal CPT0067730002 CPT0067730002.WholeGenome.RP-1303.bam 62449487609 BAM aligned CPTAC3 de931e73-d1d6-401e-8ffb-6e7bab8792a6 9d6b2c4e332199544a071c6172f44d4c { 'aliquot_tag': 'ALQ_afa44380', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01553.WGS.N.hg38 C3L-01553 CCRCC WGS blood_normal CPT0067730002 f6acdb05-d0ca-4749-8b17-c1af50669ffd_gdc_realn.bam 95102968730 BAM harmonized CPTAC3 5701e656-f407-4a48-9540-92e70295ee88 95f4682dec0ce92351822a27c8284fa3 { 'aliquot_tag': 'ALQ_afa44380', 'gdc_sample_type': 'Blood Derived Normal' } @@ -7284,9 +7923,9 @@ C3L-01557.MethArray.Red.T C3L-01557 CCRCC Methylation Array tumor CPT0085670009 C3L-01557.miRNA-Seq.T C3L-01557 CCRCC miRNA-Seq tumor CPT0085670006 181108_UNC31-K00269_0163_BH23TVBBXY_TTAGGC_S3_L008_R1_001.unaln.bam 183355573 BAM unaligned CPTAC3 4ac0cee1-2bd2-4bb5-8816-c955b0482422 6e4dcd295e11592388ac8d8cd220c2b5 { 'aliquot_tag': 'ALQ_1400f1e7', 'gdc_sample_type': 'Primary Tumor' } C3L-01557.miRNA-Seq.T.hg38 C3L-01557 CCRCC miRNA-Seq tumor CPT0085670006 e411f73b-a242-423c-84bd-922e951d45c6_mirnaseq_gdc_realn.bam 201372835 BAM harmonized CPTAC3 e7264cdc-6baa-498b-aa94-e7e677528f22 20c9fea387c0bc74fcd9ac0e20bf65ff { 'aliquot_tag': 'ALQ_1400f1e7', 'gdc_sample_type': 'Primary Tumor' } C3L-01557.RNA-Seq.chimeric.T.hg38 C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 93fa7800-0489-4508-9d34-1357688db793.rna_seq.chimeric.gdc_realn.bam 38561353 BAM chimeric harmonized CPTAC3 f81c31fc-1820-4f05-98c1-bbe5b28724d5 8c88289721e8cb247392c873ae21f23f { 'aliquot_tag': 'ALQ_1400f1e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01557.RNA-Seq.genomic.T.hg38 C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 93fa7800-0489-4508-9d34-1357688db793.rna_seq.genomic.gdc_realn.bam 8109427041 BAM genomic harmonized CPTAC3 d9324fb8-4990-4516-ad1d-50fac4d91139 e9f7000e38f26bc8d38f74c067b77660 { 'aliquot_tag': 'ALQ_1400f1e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01557.RNA-Seq.R1_L002.T C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L002_R1_001.fastq.gz 4010965070 FASTQ R1_L002 unaligned CPTAC3 9737ca2e-f500-45d5-b19f-d14a424cb8af 254ca5607eaad506a2ffb799bd9be0a8 { 'aliquot_tag': 'ALQ_1400f1e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01557.RNA-Seq.R2_L002.T C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L002_R2_001.fastq.gz 4415237814 FASTQ R2_L002 unaligned CPTAC3 34d4bcaf-18d8-4e02-aeee-8e3c0e0aafac 579650b06a6816424e407d28b263454e { 'aliquot_tag': 'ALQ_1400f1e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01557.RNA-Seq.genomic.T.hg38 C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 93fa7800-0489-4508-9d34-1357688db793.rna_seq.genomic.gdc_realn.bam 8109427041 BAM genomic harmonized CPTAC3 ad9a640c-4ef0-4807-b39d-91681525d287 e9f7000e38f26bc8d38f74c067b77660 { 'aliquot_tag': 'ALQ_1400f1e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01557.RNA-Seq.R1_L002.T C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L002_R1_001.fastq.gz 4010965070 FASTQ R1_L002 unaligned CPTAC3 9737ca2e-f500-45d5-b19f-d14a424cb8af 254ca5607eaad506a2ffb799bd9be0a8 { 'aliquot_tag': 'ALQ_1400f1e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01557.RNA-Seq.R2_L002.T C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L002_R2_001.fastq.gz 4415237814 FASTQ R2_L002 unaligned CPTAC3 34d4bcaf-18d8-4e02-aeee-8e3c0e0aafac 579650b06a6816424e407d28b263454e { 'aliquot_tag': 'ALQ_1400f1e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-01557.RNA-Seq.transcriptome.T.hg38 C3L-01557 CCRCC RNA-Seq tumor CPT0085670006 93fa7800-0489-4508-9d34-1357688db793.rna_seq.transcriptome.gdc_realn.bam 11484970206 BAM transcriptome harmonized CPTAC3 7ad37908-042c-4aa5-a244-8a5f293bf210 3552a5544aaff5f0838fa8f2984bd204 { 'aliquot_tag': 'ALQ_1400f1e7', 'gdc_sample_type': 'Primary Tumor' } C3L-01557.WGS.N C3L-01557 CCRCC WGS blood_normal CPT0086610002 CPT0086610002.WholeGenome.RP-1303.bam 81848564729 BAM aligned CPTAC3 b5f15ceb-e464-40c3-ba3f-80b6a129bd86 0471f6a2497aa29292b3a416d2dc0aad { 'aliquot_tag': 'ALQ_adc5dac3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01557.WGS.N.hg38 C3L-01557 CCRCC WGS blood_normal CPT0086610002 61c4ce19-1344-4ae6-be82-de54cc998174_gdc_realn.bam 122945078992 BAM harmonized CPTAC3 ed4f7914-5f9c-4f7f-9cea-57c3509be67b 69dcf827e3a823db2a81690c9d44e06b { 'aliquot_tag': 'ALQ_adc5dac3', 'gdc_sample_type': 'Blood Derived Normal' } @@ -7300,11 +7939,11 @@ C3L-01558.MethArray.Green.T C3L-01558 CCRCC Methylation Array tumor CPT039033000 C3L-01558.MethArray.Red.T C3L-01558 CCRCC Methylation Array tumor CPT0390330006 205555380179_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 7328d370-0913-4e10-8d70-789d61ef625d 0fa7aee71ef39d924ba0d4934494f21b { 'aliquot_tag': 'ALQ_1652d568', 'gdc_sample_type': 'Primary Tumor' } C3L-01558.miRNA-Seq.T C3L-01558 CCRCC miRNA-Seq tumor CPT0390330009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TACAGC_S33_L002_R1_001.unaln.bam 321717925 BAM unaligned CPTAC3 2a1ecc42-c6a1-43d5-8cdd-a23fe6823867 7dd5bae1412d1417632476ecaba431cc { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor' } C3L-01558.miRNA-Seq.T.hg38 C3L-01558 CCRCC miRNA-Seq tumor CPT0390330009 83796f24-269d-454d-a138-462667cd5454_mirnaseq_gdc_realn.bam 339645710 BAM harmonized CPTAC3 a9933d44-40ef-4c50-9cc7-b223968846f7 5cad7a1ab5b67499497ad3f57826986c { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-01558.RNA-Seq.chimeric.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 1e8df28a-3860-462b-b466-cf0e9d51da5d.rna_seq.chimeric.gdc_realn.bam 472820055 BAM chimeric harmonized CPTAC3 76f875f1-7efd-4dcd-b735-dfe5e75a058e ddae004ed44e2371574ef52f94e4de1c { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-01558.RNA-Seq.genomic.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 1e8df28a-3860-462b-b466-cf0e9d51da5d.rna_seq.genomic.gdc_realn.bam 8092666886 BAM genomic harmonized CPTAC3 b3528354-6c89-4965-b748-1a3a81fb6acc 4bf4b41ac27274804055e2fb155b6f77 { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-01558.RNA-Seq.R1_L007.T C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 210105_UNC32-K00270_0268_AHK7HMBBXY_AAGATACT-ACTTACAT_S22_L007_R1_001.fastq.gz 3977878573 FASTQ R1_L007 unaligned CPTAC3 93c8433b-f362-440f-894a-3483f9ae9373 aa045fc124118949a1f6c3f3ef3d8d4e { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-01558.RNA-Seq.R2_L007.T C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 210105_UNC32-K00270_0268_AHK7HMBBXY_AAGATACT-ACTTACAT_S22_L007_R2_001.fastq.gz 4353477130 FASTQ R2_L007 unaligned CPTAC3 efd6bdca-6cde-4b15-9195-90190ed25cc9 d4921d2acf9d37367ab2358300f02831 { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-01558.RNA-Seq.transcriptome.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 1e8df28a-3860-462b-b466-cf0e9d51da5d.rna_seq.transcriptome.gdc_realn.bam 8629070360 BAM transcriptome harmonized CPTAC3 311362a8-47fa-4d81-9fef-873d1ac31016 53a10990f794f154327a9c734d17698a { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor' } +C3L-01558.RNA-Seq.chimeric.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 44106af5-5be6-40cc-950c-037f9340209e.rna_seq.chimeric.gdc_realn.bam 472896402 BAM chimeric harmonized CPTAC3 d74809bb-952a-473f-b60d-cd93e3e32dbc 9ed773f210c406f7ad5240f9534221dd { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor' } +C3L-01558.RNA-Seq.genomic.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 44106af5-5be6-40cc-950c-037f9340209e.rna_seq.genomic.gdc_realn.bam 8100669314 BAM genomic harmonized CPTAC3 24bca6a1-0fc7-45ec-b881-b587302e39d7 e94229a06334a06277b9c705dbac83e4 { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor' } +C3L-01558.RNA-Seq.R1_L007.T C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 210105_UNC32-K00270_0268_AHK7HMBBXY_AAGATACT-ACTTACAT_S22_L007_R1_001.fastq.gz 3977878573 FASTQ R1_L007 unaligned CPTAC3 93c8433b-f362-440f-894a-3483f9ae9373 aa045fc124118949a1f6c3f3ef3d8d4e { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01558.RNA-Seq.R2_L007.T C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 210105_UNC32-K00270_0268_AHK7HMBBXY_AAGATACT-ACTTACAT_S22_L007_R2_001.fastq.gz 4353477130 FASTQ R2_L007 unaligned CPTAC3 efd6bdca-6cde-4b15-9195-90190ed25cc9 d4921d2acf9d37367ab2358300f02831 { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-01558.RNA-Seq.transcriptome.T.hg38 C3L-01558 CCRCC RNA-Seq tumor CPT0390330009 44106af5-5be6-40cc-950c-037f9340209e.rna_seq.transcriptome.gdc_realn.bam 9955619486 BAM transcriptome harmonized CPTAC3 77b19519-4d0a-454b-9487-88d376098a81 53259e266364c1fa798c38a5da4989e7 { 'aliquot_tag': 'ALQ_86edc8f9', 'gdc_sample_type': 'Primary Tumor' } C3L-01558.WGS.N C3L-01558 CCRCC WGS blood_normal CPT0390390002 CPT0390390002.WholeGenome.RP-2158.bam 26076992044 BAM aligned CPTAC3 f49c8a56-2ff4-42a9-9777-bd288d6bf342 5d3e79cabe9257988332e823e8298ce4 { 'aliquot_tag': 'ALQ_5b8f09d0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01558.WGS.N.hg38 C3L-01558 CCRCC WGS blood_normal CPT0390390002 5a2482f4-c011-4f2f-80e5-dbfee08aae1b_wgs_gdc_realn.bam 80433406157 BAM harmonized CPTAC3 a0ed1560-7e6a-4e0a-8c70-b20982be37de b4940386e8933065a5a3082d9723c00a { 'aliquot_tag': 'ALQ_5b8f09d0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01558.WGS.T C3L-01558 CCRCC WGS tumor CPT0390330006 CPT0390330006.WholeGenome.RP-2158.bam 25751515320 BAM aligned CPTAC3 38182611-5069-4cd7-a7c7-6067da7af6b1 c08a993a0b5c74477566bd2534c70cfa { 'aliquot_tag': 'ALQ_1652d568', 'gdc_sample_type': 'Primary Tumor' } @@ -7319,8 +7958,8 @@ C3L-01560.miRNA-Seq.T C3L-01560 CCRCC miRNA-Seq tumor CPT0086030006 181113_UNC31 C3L-01560.miRNA-Seq.T.hg38 C3L-01560 CCRCC miRNA-Seq tumor CPT0086030006 3d506b8a-4f54-46eb-b3d6-6a793bec1640_mirnaseq_gdc_realn.bam 229601597 BAM harmonized CPTAC3 1781d3a0-f0d4-4258-aea9-5169b06806fe ef797b9b399a7f77674c467c505fb726 { 'aliquot_tag': 'ALQ_631aea7', 'gdc_sample_type': 'Primary Tumor' } C3L-01560.RNA-Seq.chimeric.T.hg38 C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 b0a3ffab-d05f-4b36-8fd2-8b92775e4c54.rna_seq.chimeric.gdc_realn.bam 44035878 BAM chimeric harmonized CPTAC3 288438a6-79f6-4806-86b1-2e3d4c32d27b cc5a9322d088f7c369612e3b2993be67 { 'aliquot_tag': 'ALQ_631aea7', 'gdc_sample_type': 'Primary Tumor' } C3L-01560.RNA-Seq.genomic.T.hg38 C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 b0a3ffab-d05f-4b36-8fd2-8b92775e4c54.rna_seq.genomic.gdc_realn.bam 9612780829 BAM genomic harmonized CPTAC3 9c2c397f-23fd-4643-b6f4-1e3af764f572 fe423768bc6788fbb820d636be2137a5 { 'aliquot_tag': 'ALQ_631aea7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01560.RNA-Seq.R1_L001.T C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4641575499 FASTQ R1_L001 unaligned CPTAC3 db9b8954-51ad-4c21-8c8e-3f2469dfa347 617f48e835b8d6f8ac012f596684d039 { 'aliquot_tag': 'ALQ_631aea7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01560.RNA-Seq.R2_L001.T C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5081432549 FASTQ R2_L001 unaligned CPTAC3 accf0284-6fcf-48c4-8438-5d31e3b84768 281f7e4ed4a8ae214b06162a4942fc7b { 'aliquot_tag': 'ALQ_631aea7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01560.RNA-Seq.R1_L001.T C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L001_R1_001.fastq.gz 4641575499 FASTQ R1_L001 unaligned CPTAC3 db9b8954-51ad-4c21-8c8e-3f2469dfa347 617f48e835b8d6f8ac012f596684d039 { 'aliquot_tag': 'ALQ_631aea7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01560.RNA-Seq.R2_L001.T C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 5081432549 FASTQ R2_L001 unaligned CPTAC3 accf0284-6fcf-48c4-8438-5d31e3b84768 281f7e4ed4a8ae214b06162a4942fc7b { 'aliquot_tag': 'ALQ_631aea7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-01560.RNA-Seq.transcriptome.T.hg38 C3L-01560 CCRCC RNA-Seq tumor CPT0086030006 b0a3ffab-d05f-4b36-8fd2-8b92775e4c54.rna_seq.transcriptome.gdc_realn.bam 12794964599 BAM transcriptome harmonized CPTAC3 9d601fb9-8ab9-4e6c-bf9f-8d7996b85094 b0400fbc0bff561f761f552ffe086ab4 { 'aliquot_tag': 'ALQ_631aea7', 'gdc_sample_type': 'Primary Tumor' } C3L-01560.WGS.N C3L-01560 CCRCC WGS blood_normal CPT0086720001 CPT0086720001.WholeGenome.RP-1303.bam 64782999863 BAM aligned CPTAC3 8548b067-86ed-4035-aecd-a144f09ba55d 12264e5b37e3075a152528c85119a39b { 'aliquot_tag': 'ALQ_b830220c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01560.WGS.N.hg38 C3L-01560 CCRCC WGS blood_normal CPT0086720001 91858a3e-1ed3-4dd8-ae19-b5cf5123ce6f_gdc_realn.bam 97760578671 BAM harmonized CPTAC3 0b520f15-e3fb-431e-bc04-bb471589cceb 51768fab5c2206c29a6fac253d644435 { 'aliquot_tag': 'ALQ_b830220c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -7342,8 +7981,8 @@ C3L-01598.miRNA-Seq.T C3L-01598 PDA miRNA-Seq tumor CPT0091660006 180828_UNC32-K C3L-01598.miRNA-Seq.T.hg38 C3L-01598 PDA miRNA-Seq tumor CPT0091660006 96fdce6d-82ff-4882-bd92-2156325ae4eb_mirnaseq_gdc_realn.bam 259370167 BAM harmonized CPTAC3 a0f984c1-b0eb-4061-b328-97194a630664 b9a2591cbb13d7fe85a1b3db3d3eecd2 { 'aliquot_tag': 'ALQ_1185fcda', 'gdc_sample_type': 'Primary Tumor' } C3L-01598.RNA-Seq.chimeric.T.hg38 C3L-01598 PDA RNA-Seq tumor CPT0091660006 c347d280-62e3-46bf-b442-0a6aaf73f44e.rna_seq.chimeric.gdc_realn.bam 43173440 BAM chimeric harmonized CPTAC3 ac6185fb-1287-4efd-bedd-1654533be2a2 9e6f2070d1ae298857c203ef958319dc { 'aliquot_tag': 'ALQ_1185fcda', 'gdc_sample_type': 'Primary Tumor' } C3L-01598.RNA-Seq.genomic.T.hg38 C3L-01598 PDA RNA-Seq tumor CPT0091660006 c347d280-62e3-46bf-b442-0a6aaf73f44e.rna_seq.genomic.gdc_realn.bam 9944112917 BAM genomic harmonized CPTAC3 18fd8c43-23d4-4f49-ae1f-ba2a698713cd 965e7dd258aa87725d978f0801173951 { 'aliquot_tag': 'ALQ_1185fcda', 'gdc_sample_type': 'Primary Tumor' } -C3L-01598.RNA-Seq.R1_L001.T C3L-01598 PDA RNA-Seq tumor CPT0091660006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 4147745309 FASTQ R1_L001 unaligned CPTAC3 db006b75-16be-4d3c-8eb1-7f37bb7992a5 89b5ab5a01bff50a67fd37db0e56143d { 'aliquot_tag': 'ALQ_1185fcda', 'gdc_sample_type': 'Primary Tumor' } -C3L-01598.RNA-Seq.R2_L001.T C3L-01598 PDA RNA-Seq tumor CPT0091660006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 4720778051 FASTQ R2_L001 unaligned CPTAC3 6a133ab8-8d0f-4a87-abde-f9e1fe9ac3bf 491359935c6df43908dab9c189901b74 { 'aliquot_tag': 'ALQ_1185fcda', 'gdc_sample_type': 'Primary Tumor' } +C3L-01598.RNA-Seq.R1_L001.T C3L-01598 PDA RNA-Seq tumor CPT0091660006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L001_R1_001.fastq.gz 4147745309 FASTQ R1_L001 unaligned CPTAC3 db006b75-16be-4d3c-8eb1-7f37bb7992a5 89b5ab5a01bff50a67fd37db0e56143d { 'aliquot_tag': 'ALQ_1185fcda', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01598.RNA-Seq.R2_L001.T C3L-01598 PDA RNA-Seq tumor CPT0091660006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L001_R2_001.fastq.gz 4720778051 FASTQ R2_L001 unaligned CPTAC3 6a133ab8-8d0f-4a87-abde-f9e1fe9ac3bf 491359935c6df43908dab9c189901b74 { 'aliquot_tag': 'ALQ_1185fcda', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-01598.RNA-Seq.transcriptome.T.hg38 C3L-01598 PDA RNA-Seq tumor CPT0091660006 c347d280-62e3-46bf-b442-0a6aaf73f44e.rna_seq.transcriptome.gdc_realn.bam 12140412834 BAM transcriptome harmonized CPTAC3 ccda1c8e-31f5-45dc-84f1-9bc3965ba9d9 99307777d31f6e3495da4be896b0428d { 'aliquot_tag': 'ALQ_1185fcda', 'gdc_sample_type': 'Primary Tumor' } C3L-01598.Targeted.T C3L-01598 PDA Targeted Sequencing tumor CPT0091660009_1 CPT0091660009_1.CustomSelection.RP-1303.PDO-18786.bam 5297055391 BAM aligned CPTAC3 036c4a6e-89f6-4723-a1d0-0d1dbe0965bc 1f4bc27f72b4ddba53f10b3cf596c1d9 { 'aliquot_tag': 'ALQ_e9a49644', 'gdc_sample_type': 'Primary Tumor' } C3L-01598.Targeted.T.hg38 C3L-01598 PDA Targeted Sequencing tumor CPT0091660009_1 15814773-2f11-40f1-a6fb-d14270400e3a_targetedsequencing_gdc_realn.bam 7432931261 BAM harmonized CPTAC3 255efabd-6585-4f44-b2c4-5dd0c810fe8c b02e12348e0bc5ed7a513844cd95677a { 'aliquot_tag': 'ALQ_e9a49644', 'gdc_sample_type': 'Primary Tumor' } @@ -7361,13 +8000,16 @@ C3L-01599.MethArray.Green.T C3L-01599 UCEC Methylation Array tumor CPT0087260009 C3L-01599.MethArray.Red.T C3L-01599 UCEC Methylation Array tumor CPT0087260009 202184900148_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 54f67752-b6c5-4243-ba79-e3bb1462c888 8e3cef59067945dc1617dfb8175c1741 { 'aliquot_tag': 'ALQ_b5d196f9', 'gdc_sample_type': 'Primary Tumor' } C3L-01599.miRNA-Seq.T C3L-01599 UCEC miRNA-Seq tumor CPT0087260006 181108_UNC31-K00269_0163_BH23TVBBXY_ATCACG_S1_L008_R1_001.unaln.bam 190013701 BAM unaligned CPTAC3 604485c8-d180-41f4-bff9-3e554b4888e0 2ae9b6e347ceb8e4662bca5351cc9d05 { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor' } C3L-01599.miRNA-Seq.T.hg38 C3L-01599 UCEC miRNA-Seq tumor CPT0087260006 606bc1eb-f5a2-4460-8bbe-22251e7afab4_mirnaseq_gdc_realn.bam 208376458 BAM harmonized CPTAC3 6fb0c4a5-f822-440f-b85c-61f911bc447f c504cccdfbd199c59f2f47ab9b0edad4 { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor' } -C3L-01599.RNA-Seq.chimeric.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 5420be16-a11a-4399-9933-90b42ad00d85.rna_seq.chimeric.gdc_realn.bam 27410645 BAM chimeric harmonized CPTAC3 e2f8a5b7-4fb4-41c9-bd1b-0e5a7130a27e 77104b052a0fdcbdd83227b1069300aa { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor' } -C3L-01599.RNA-Seq.genomic.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 5420be16-a11a-4399-9933-90b42ad00d85.rna_seq.genomic.gdc_realn.bam 7092255435 BAM genomic harmonized CPTAC3 a494eb6f-0a43-493e-b3b8-fd8916ae593d 718bccd7d29e6d81bf64c0ad536ae889 { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor' } -C3L-01599.RNA-Seq.R1_L003.T C3L-01599 UCEC RNA-Seq tumor CPT0087260006 170908_UNC31-K00269_0080_BHLJ52BBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3425773606 FASTQ R1_L003 unaligned CPTAC3 20741a92-c13e-4dfb-85e3-6726c46ad318 b353f22c29f4e1a2cbaffd5e1e9e4c5a { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor' } -C3L-01599.RNA-Seq.R1_.T C3L-01599 UCEC RNA-Seq tumor CPT0349930001 20210723_P2_E10_WB7988-plate2_S58_R1_001.fastq.gz 4969455566 FASTQ R1_ unaligned CPTAC3 09f10941-42fe-47bb-a170-3fa0970bead9 63820604b14480ed90179b176f2f94eb { 'aliquot_tag': 'ALQ_273033af', 'gdc_sample_type': 'Primary Tumor' } -C3L-01599.RNA-Seq.R2_L003.T C3L-01599 UCEC RNA-Seq tumor CPT0087260006 170908_UNC31-K00269_0080_BHLJ52BBXX_TTAGGC_S10_L003_R2_001.fastq.gz 3732759221 FASTQ R2_L003 unaligned CPTAC3 ed63223c-b578-4071-bdf8-178a21e5e032 ef1115825dff6c567a46fb27593dc62e { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor' } -C3L-01599.RNA-Seq.R2_.T C3L-01599 UCEC RNA-Seq tumor CPT0349930001 20210723_P2_E10_WB7988-plate2_S58_R2_001.fastq.gz 5158381706 FASTQ R2_ unaligned CPTAC3 22dae48f-7718-4bf3-93ad-607e94aa2e4d f551918aa0634f528968b0559d279da6 { 'aliquot_tag': 'ALQ_273033af', 'gdc_sample_type': 'Primary Tumor' } -C3L-01599.RNA-Seq.transcriptome.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 5420be16-a11a-4399-9933-90b42ad00d85.rna_seq.transcriptome.gdc_realn.bam 8266679473 BAM transcriptome harmonized CPTAC3 a92d7322-3783-4347-ab35-34fce15ced23 f4c9a743532c3f06faf69561f0b69514 { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor' } +C3L-01599.RNA-Seq.chimeric.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 1702f71c-9125-4f5d-8ec7-5470d89f0dde.rna_seq.chimeric.gdc_realn.bam 27404951 BAM chimeric harmonized CPTAC3 270d5218-fcc6-4902-b15e-ce9e8918f7b0 9483f52dfa868955f10ecd7d368993dc { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor' } +C3L-01599.RNA-Seq.chimeric.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0349930001 22185128-2259-45cf-9e1c-ebd61d15bed0.rna_seq.chimeric.gdc_realn.bam 148009597 BAM chimeric harmonized CPTAC3 b9773c17-d00d-4f87-9eca-1c93af409dd2 7d79c1abbfc46ba04d1897692d32e81f { 'aliquot_tag': 'ALQ_273033af', 'gdc_sample_type': 'Primary Tumor' } +C3L-01599.RNA-Seq.genomic.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 1702f71c-9125-4f5d-8ec7-5470d89f0dde.rna_seq.genomic.gdc_realn.bam 7093176807 BAM genomic harmonized CPTAC3 af6c1d49-05d2-4aa2-8495-5e5a0dc80b4b 1d5ca2e7c44b754ca000a6808c859359 { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor' } +C3L-01599.RNA-Seq.genomic.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0349930001 22185128-2259-45cf-9e1c-ebd61d15bed0.rna_seq.genomic.gdc_realn.bam 8270590150 BAM genomic harmonized CPTAC3 b1f37ba8-32ae-4acc-afb2-48b4e437cf85 3124ec34cbd83c50866be67d256ee53f { 'aliquot_tag': 'ALQ_273033af', 'gdc_sample_type': 'Primary Tumor' } +C3L-01599.RNA-Seq.R1_L003.T C3L-01599 UCEC RNA-Seq tumor CPT0087260006 170908_UNC31-K00269_0080_BHLJ52BBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3425773606 FASTQ R1_L003 unaligned CPTAC3 20741a92-c13e-4dfb-85e3-6726c46ad318 b353f22c29f4e1a2cbaffd5e1e9e4c5a { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01599.RNA-Seq.R2_L003.T C3L-01599 UCEC RNA-Seq tumor CPT0087260006 170908_UNC31-K00269_0080_BHLJ52BBXX_TTAGGC_S10_L003_R2_001.fastq.gz 3732759221 FASTQ R2_L003 unaligned CPTAC3 ed63223c-b578-4071-bdf8-178a21e5e032 ef1115825dff6c567a46fb27593dc62e { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01599.RNA-Seq.T C3L-01599 UCEC RNA-Seq tumor CPT0349930001 20210723_P2_E10_WB7988-plate2_S58_R1_001.fastq.gz 4969455566 FASTQ unaligned CPTAC3 09f10941-42fe-47bb-a170-3fa0970bead9 63820604b14480ed90179b176f2f94eb +C3L-01599.RNA-Seq.T C3L-01599 UCEC RNA-Seq tumor CPT0349930001 20210723_P2_E10_WB7988-plate2_S58_R2_001.fastq.gz 5158381706 FASTQ unaligned CPTAC3 22dae48f-7718-4bf3-93ad-607e94aa2e4d f551918aa0634f528968b0559d279da6 +C3L-01599.RNA-Seq.transcriptome.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0087260006 1702f71c-9125-4f5d-8ec7-5470d89f0dde.rna_seq.transcriptome.gdc_realn.bam 9422437080 BAM transcriptome harmonized CPTAC3 0468d872-7864-400b-a755-c198977095fe 188ca5ca6a1fa9f60a5ba741eaf6a58e { 'aliquot_tag': 'ALQ_256e8b68', 'gdc_sample_type': 'Primary Tumor' } +C3L-01599.RNA-Seq.transcriptome.T.hg38 C3L-01599 UCEC RNA-Seq tumor CPT0349930001 22185128-2259-45cf-9e1c-ebd61d15bed0.rna_seq.transcriptome.gdc_realn.bam 4512065970 BAM transcriptome harmonized CPTAC3 1036b394-d65f-4f93-bb2c-09d8642d0846 60e1531db0c6289cba1126a34d28832a { 'aliquot_tag': 'ALQ_273033af', 'gdc_sample_type': 'Primary Tumor' } C3L-01599.WGS.N C3L-01599 UCEC WGS blood_normal CPT0087490002 CPT0087490002.WholeGenome.RP-1303.bam 64880951881 BAM aligned CPTAC3 2e88df73-279b-4d95-b0c8-00f6976cac60 c45467e6d0bd3d3ffbd258da795a720d { 'aliquot_tag': 'ALQ_760a3bbd', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01599.WGS.N.hg38 C3L-01599 UCEC WGS blood_normal CPT0087490002 340897a3-7324-4f04-a62c-b558e04fe62f_gdc_realn.bam 98063789736 BAM harmonized CPTAC3 4f2b06b9-64f0-4dfd-8ca7-e999e3e29975 9fc79af32666fcd7f7d2863a1ca12d00 { 'aliquot_tag': 'ALQ_760a3bbd', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01599.WGS.T C3L-01599 UCEC WGS tumor CPT0087260009 CPT0087260009.WholeGenome.RP-1303.bam 77658358712 BAM aligned CPTAC3 8dc08441-35f4-4635-a111-3860af695f52 7548ba8a4177d90a57117f70f9b9c188 { 'aliquot_tag': 'ALQ_b5d196f9', 'gdc_sample_type': 'Primary Tumor' } @@ -7382,16 +8024,16 @@ C3L-01601.miRNA-Seq.A C3L-01601 SAR miRNA-Seq tissue_normal CPT0087130009 181113 C3L-01601.miRNA-Seq.A.hg38 C3L-01601 SAR miRNA-Seq tissue_normal CPT0087130009 b57c0c5a-0c59-4cd2-9004-9d63bd81e9a1_mirnaseq_gdc_realn.bam 207409118 BAM harmonized CPTAC3 cfd48c02-6c15-4249-82a4-bf0ab7629173 7ab6ded46df155d9c42274ae6da333f1 { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01601.miRNA-Seq.T C3L-01601 SAR miRNA-Seq tumor CPT0087120006 180724_UNC32-K00270_0106_BHWK3MBBXX_ATGTCA_S37_L008_R1_001.unaln.bam 258542822 BAM unaligned CPTAC3 801b0079-b8ff-4855-874c-f030d22b16c4 b930cc024f700bdc72a25affa0d6b56a { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor' } C3L-01601.miRNA-Seq.T.hg38 C3L-01601 SAR miRNA-Seq tumor CPT0087120006 9985e417-d960-446a-b62f-5aeccc6d9498_mirnaseq_gdc_realn.bam 281238757 BAM harmonized CPTAC3 fdc1963b-9410-4239-886e-c612b55305cb 4946bf68631c95fb5fea7ad6d63d16bb { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor' } -C3L-01601.RNA-Seq.chimeric.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 7a3d4538-200e-4f95-b985-d14e91006fd4.rna_seq.chimeric.gdc_realn.bam 31315050 BAM chimeric harmonized CPTAC3 5a0e66a6-fd0d-4be7-b72a-06eb8982615d 659d097419a6c72d8fb32d652d00dc89 { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01601.RNA-Seq.chimeric.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 93bbec1b-7a8b-4646-97a2-e1b0d1a839e7.rna_seq.chimeric.gdc_realn.bam 36472147 BAM chimeric harmonized CPTAC3 0637eb29-8a71-439a-aa4c-699a042eb8ad 9689c34e5a0c6106154e16b8f13d08e6 { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor' } -C3L-01601.RNA-Seq.genomic.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 7a3d4538-200e-4f95-b985-d14e91006fd4.rna_seq.genomic.gdc_realn.bam 9287220181 BAM genomic harmonized CPTAC3 12b5b380-4879-4cb2-86ae-52e9bd3ba2ab b8339a568c288442e17b07a0d6b8a4df { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01601.RNA-Seq.genomic.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 93bbec1b-7a8b-4646-97a2-e1b0d1a839e7.rna_seq.genomic.gdc_realn.bam 7341231691 BAM genomic harmonized CPTAC3 d2033364-ecb4-4bdd-8812-81e570ce01cc 1f7facb775fd860204e8ba4e88b450f7 { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor' } -C3L-01601.RNA-Seq.R1_L002.T C3L-01601 SAR RNA-Seq tumor CPT0087120006 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L002_R1_001.fastq.gz 3655471469 FASTQ R1_L002 unaligned CPTAC3 74bd7423-bd88-4774-b5af-1969b53a8aa8 5c486172ade84e6975ff680338cc0181 { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor' } -C3L-01601.RNA-Seq.R1_L004.A C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 180606_UNC32-K00270_0097_AHVCKFBBXX_CGTACG_S14_L004_R1_001.fastq.gz 3867660485 FASTQ R1_L004 unaligned CPTAC3 270ff7ed-03d6-482f-819d-c1192ac3dd79 62ba0c90a9c19fa0c6d8890c98f393b1 { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01601.RNA-Seq.R2_L002.T C3L-01601 SAR RNA-Seq tumor CPT0087120006 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L002_R2_001.fastq.gz 4038026134 FASTQ R2_L002 unaligned CPTAC3 7b9fccf0-a718-492b-8698-8a72a2c2a719 cee817b6927a12926e2612fbfa049790 { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor' } -C3L-01601.RNA-Seq.R2_L004.A C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 180606_UNC32-K00270_0097_AHVCKFBBXX_CGTACG_S14_L004_R2_001.fastq.gz 4348466857 FASTQ R2_L004 unaligned CPTAC3 79b04c28-861b-49c8-96d0-3deccc138236 7c2b634e47291234f8431254adc5b2f1 { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01601.RNA-Seq.transcriptome.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 7a3d4538-200e-4f95-b985-d14e91006fd4.rna_seq.transcriptome.gdc_realn.bam 8846841053 BAM transcriptome harmonized CPTAC3 347778a1-676f-41cf-9603-25642259283d 787bd3865a8b6734a0a962db0c56a750 { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01601.RNA-Seq.transcriptome.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 93bbec1b-7a8b-4646-97a2-e1b0d1a839e7.rna_seq.transcriptome.gdc_realn.bam 8006711644 BAM transcriptome harmonized CPTAC3 b3c5db71-0a0f-4144-9554-2088842ea1e1 9528d3d75e846e11ae5a9cdef7b67fe7 { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor' } +C3L-01601.RNA-Seq.chimeric.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 aa211895-58f2-474a-a875-1dca4f31c37f.rna_seq.chimeric.gdc_realn.bam 31309899 BAM chimeric harmonized CPTAC3 fa5ec2ad-5767-484c-8992-19902bb790f7 8c2c5b0d8ae3740e53bada6f343bb761 { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01601.RNA-Seq.chimeric.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 d80e838b-1c95-4afb-a3db-c6e82f0c895b.rna_seq.chimeric.gdc_realn.bam 36455540 BAM chimeric harmonized CPTAC3 9fe2a27b-fc47-4081-849e-d86fdae09e1d b1634046d670fce8421638180b0c8335 { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor' } +C3L-01601.RNA-Seq.genomic.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 aa211895-58f2-474a-a875-1dca4f31c37f.rna_seq.genomic.gdc_realn.bam 9287870555 BAM genomic harmonized CPTAC3 99e26486-825b-4120-b028-3ea2e35ad155 cab9ae140a27078088b7358f63df8d5d { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01601.RNA-Seq.genomic.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 d80e838b-1c95-4afb-a3db-c6e82f0c895b.rna_seq.genomic.gdc_realn.bam 7342315684 BAM genomic harmonized CPTAC3 458f9cef-37d0-4659-84ad-dc68f77061eb 9ee8628581e0462a432158de6f00011e { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor' } +C3L-01601.RNA-Seq.R1_L002.T C3L-01601 SAR RNA-Seq tumor CPT0087120006 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L002_R1_001.fastq.gz 3655471469 FASTQ R1_L002 unaligned CPTAC3 74bd7423-bd88-4774-b5af-1969b53a8aa8 5c486172ade84e6975ff680338cc0181 { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01601.RNA-Seq.R1_L004.A C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 180606_UNC32-K00270_0097_AHVCKFBBXX_CGTACG_S14_L004_R1_001.fastq.gz 3867660485 FASTQ R1_L004 unaligned CPTAC3 270ff7ed-03d6-482f-819d-c1192ac3dd79 62ba0c90a9c19fa0c6d8890c98f393b1 { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-01601.RNA-Seq.R2_L002.T C3L-01601 SAR RNA-Seq tumor CPT0087120006 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L002_R2_001.fastq.gz 4038026134 FASTQ R2_L002 unaligned CPTAC3 7b9fccf0-a718-492b-8698-8a72a2c2a719 cee817b6927a12926e2612fbfa049790 { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01601.RNA-Seq.R2_L004.A C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 180606_UNC32-K00270_0097_AHVCKFBBXX_CGTACG_S14_L004_R2_001.fastq.gz 4348466857 FASTQ R2_L004 unaligned CPTAC3 79b04c28-861b-49c8-96d0-3deccc138236 7c2b634e47291234f8431254adc5b2f1 { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-01601.RNA-Seq.transcriptome.A.hg38 C3L-01601 SAR RNA-Seq tissue_normal CPT0087130009 aa211895-58f2-474a-a875-1dca4f31c37f.rna_seq.transcriptome.gdc_realn.bam 10047655932 BAM transcriptome harmonized CPTAC3 528f5269-049c-4961-a57d-bb950e877dc1 f627d34749d4fab3e55201e32b72a122 { 'aliquot_tag': 'ALQ_fba56b27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01601.RNA-Seq.transcriptome.T.hg38 C3L-01601 SAR RNA-Seq tumor CPT0087120006 d80e838b-1c95-4afb-a3db-c6e82f0c895b.rna_seq.transcriptome.gdc_realn.bam 9223491278 BAM transcriptome harmonized CPTAC3 010643ad-1652-49b8-98ec-3d034274423b d67dd6bf1d760b4da49044002e46522e { 'aliquot_tag': 'ALQ_567a5f06', 'gdc_sample_type': 'Primary Tumor' } C3L-01601.WGS.A C3L-01601 SAR WGS tissue_normal CPT0087130006 CPT0087130006.WholeGenome.RP-1303.bam 64370288294 BAM aligned CPTAC3 31f40d4f-2521-436e-a794-6f96f61b37b6 8111331e637c564e39b1b9669f9b85f6 { 'aliquot_tag': 'ALQ_6b1a76b6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01601.WGS.A.hg38 C3L-01601 SAR WGS tissue_normal CPT0087130006 78f95fc8-6b51-4a22-936d-ed0ac5991af7_wgs_gdc_realn.bam 92673874222 BAM harmonized CPTAC3 11256f24-6f95-4715-80a0-ca88eddffeab d018c287df38c57ed1e1a3118b2bee95 { 'aliquot_tag': 'ALQ_6b1a76b6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01601.WGS.N C3L-01601 SAR WGS blood_normal CPT0087470002 CPT0087470002.WholeGenome.RP-1303.bam 56631961543 BAM aligned CPTAC3 0c7ed95e-c127-4a49-bee7-0202bdc1213a 579a1764fd125537bbb8dc93781f10cb { 'aliquot_tag': 'ALQ_c93a85dc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -7413,16 +8055,16 @@ C3L-01603.DUP_30f9b882.WXS.T.hg38 C3L-01603 CCRCC WXS tumor CPT0087030009 aaedab C3L-01603.DUP_9d268ca3.miRNA-Seq.T C3L-01603 CCRCC miRNA-Seq tumor CPT0087020006 200526_UNC32-K00270_0248_BHH7WFBBXY_TACAGC_S16_L003_R1_001.unaln.bam 384606700 BAM unaligned CPTAC3 2b19c8c6-da19-4267-a82c-a2d1e5662c47 59489140551a5b400a599c83c9899a0b { 'aliquot_tag': 'DUP_9d268ca3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01603.DUP_9d268ca3.miRNA-Seq.T.hg38 C3L-01603 CCRCC miRNA-Seq tumor CPT0087020006 0bcb4164-b4f9-44a5-b3bf-1fd03c033263_mirnaseq_gdc_realn.bam 427498345 BAM harmonized CPTAC3 95c24783-f0ce-462c-b0a8-789b74b60781 3469a82562a3fac48b8a9d8a8de1f338 { 'aliquot_tag': 'DUP_9d268ca3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01603.DUP_9d268ca3.RNA-Seq.chimeric.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 790730b0-3af3-4725-a0e1-c222aacce4a6.rna_seq.chimeric.gdc_realn.bam 364215582 BAM chimeric harmonized CPTAC3 ee0f5d21-bc3c-4b68-a40d-47aa32943716 be6d6d805d88f60cca964c90117468fb { 'aliquot_tag': 'DUP_9d268ca3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01603.DUP_9d268ca3.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 790730b0-3af3-4725-a0e1-c222aacce4a6.rna_seq.genomic.gdc_realn.bam 7987420674 BAM genomic harmonized CPTAC3 35ba342a-fef3-48bb-b266-ba16a2bb1d56 641034ccda33d62e90d0c67c2a5ebebd { 'aliquot_tag': 'DUP_9d268ca3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01603.DUP_9d268ca3.RNA-Seq.R1_L006.T C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 200519_UNC31-K00269_0279_AHH5VTBBXY_AAGATACT-ACTTACAT_S21_L006_R1_001.fastq.gz 3934128919 FASTQ R1_L006 unaligned CPTAC3 cb95c513-52ca-4641-aa21-ee16ecb9bf76 f56386f3d8fb504aed1ac65158a68ee0 { 'aliquot_tag': 'DUP_9d268ca3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01603.DUP_9d268ca3.RNA-Seq.R2_L006.T C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 200519_UNC31-K00269_0279_AHH5VTBBXY_AAGATACT-ACTTACAT_S21_L006_R2_001.fastq.gz 4490562842 FASTQ R2_L006 unaligned CPTAC3 dbfcd61d-13bd-434f-88f8-39a69e5c0460 8b19beb1eb3bfe6833994642280f021f { 'aliquot_tag': 'DUP_9d268ca3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01603.DUP_9d268ca3.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 790730b0-3af3-4725-a0e1-c222aacce4a6.rna_seq.genomic.gdc_realn.bam 7987420674 BAM genomic harmonized CPTAC3 66d0cb3f-8b8b-4147-87c3-39eb66ebc2c0 641034ccda33d62e90d0c67c2a5ebebd { 'aliquot_tag': 'DUP_9d268ca3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01603.DUP_9d268ca3.RNA-Seq.R1_L006.T C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 200519_UNC31-K00269_0279_AHH5VTBBXY_AAGATACT-ACTTACAT_S21_L006_R1_001.fastq.gz 3934128919 FASTQ R1_L006 unaligned CPTAC3 cb95c513-52ca-4641-aa21-ee16ecb9bf76 f56386f3d8fb504aed1ac65158a68ee0 { 'aliquot_tag': 'DUP_9d268ca3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3L-01603.DUP_9d268ca3.RNA-Seq.R2_L006.T C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 200519_UNC31-K00269_0279_AHH5VTBBXY_AAGATACT-ACTTACAT_S21_L006_R2_001.fastq.gz 4490562842 FASTQ R2_L006 unaligned CPTAC3 dbfcd61d-13bd-434f-88f8-39a69e5c0460 8b19beb1eb3bfe6833994642280f021f { 'aliquot_tag': 'DUP_9d268ca3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3L-01603.DUP_9d268ca3.RNA-Seq.transcriptome.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087020006 790730b0-3af3-4725-a0e1-c222aacce4a6.rna_seq.transcriptome.gdc_realn.bam 9324220490 BAM transcriptome harmonized CPTAC3 3fe76094-046d-4278-85c4-22b527cd9a81 78b03da328882256d22017833eedd577 { 'aliquot_tag': 'DUP_9d268ca3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01603.DUP_a046a513.miRNA-Seq.T C3L-01603 CCRCC miRNA-Seq tumor CPT0087030006 200526_UNC32-K00270_0248_BHH7WFBBXY_TATAAT_S17_L003_R1_001.unaln.bam 342183985 BAM unaligned CPTAC3 d2f2dee4-4830-4dea-adfd-0c59e72eebd5 e1f8edecafef59b24174e3b094cdd3e1 { 'aliquot_tag': 'DUP_a046a513', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01603.DUP_a046a513.miRNA-Seq.T.hg38 C3L-01603 CCRCC miRNA-Seq tumor CPT0087030006 f7f7bcd1-cbd2-402d-8190-57ec78f8bd44_mirnaseq_gdc_realn.bam 378581708 BAM harmonized CPTAC3 2f260463-6f6d-44e7-80f2-7004f5cac59d ae1f8fc40bcf69417cb618bbedf93f66 { 'aliquot_tag': 'DUP_a046a513', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01603.DUP_a046a513.RNA-Seq.chimeric.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 54e92824-8d82-483f-afaa-f49d06b74a97.rna_seq.chimeric.gdc_realn.bam 299806412 BAM chimeric harmonized CPTAC3 77bc937a-7d22-4491-ad45-2492cb49fa0f 454d1e7d0e9fb534c61d68a2781b3953 { 'aliquot_tag': 'DUP_a046a513', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01603.DUP_a046a513.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 54e92824-8d82-483f-afaa-f49d06b74a97.rna_seq.genomic.gdc_realn.bam 7989861670 BAM genomic harmonized CPTAC3 866fb19f-43c1-4370-806e-e32fc2741ec2 e60115da860e299d65d65212d8977419 { 'aliquot_tag': 'DUP_a046a513', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01603.DUP_a046a513.RNA-Seq.R1_L006.T C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGAGCGTC-GTCCGTGC_S24_L006_R1_001.fastq.gz 3759773869 FASTQ R1_L006 unaligned CPTAC3 8b099758-d7e9-4d93-8efb-f32ec126a22f 92d362c3dd39f1c97cef0f9fb74ce604 { 'aliquot_tag': 'DUP_a046a513', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01603.DUP_a046a513.RNA-Seq.R2_L006.T C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGAGCGTC-GTCCGTGC_S24_L006_R2_001.fastq.gz 4442281635 FASTQ R2_L006 unaligned CPTAC3 0d1f8769-7831-4527-9fad-7baeb5269902 a208dde55f923b1fe68b33769cd92021 { 'aliquot_tag': 'DUP_a046a513', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01603.DUP_a046a513.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 54e92824-8d82-483f-afaa-f49d06b74a97.rna_seq.genomic.gdc_realn.bam 7989861670 BAM genomic harmonized CPTAC3 6348e12d-44c3-4b85-8566-fd49c4352462 e60115da860e299d65d65212d8977419 { 'aliquot_tag': 'DUP_a046a513', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01603.DUP_a046a513.RNA-Seq.R1_L006.T C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGAGCGTC-GTCCGTGC_S24_L006_R1_001.fastq.gz 3759773869 FASTQ R1_L006 unaligned CPTAC3 8b099758-d7e9-4d93-8efb-f32ec126a22f 92d362c3dd39f1c97cef0f9fb74ce604 { 'aliquot_tag': 'DUP_a046a513', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3L-01603.DUP_a046a513.RNA-Seq.R2_L006.T C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGAGCGTC-GTCCGTGC_S24_L006_R2_001.fastq.gz 4442281635 FASTQ R2_L006 unaligned CPTAC3 0d1f8769-7831-4527-9fad-7baeb5269902 a208dde55f923b1fe68b33769cd92021 { 'aliquot_tag': 'DUP_a046a513', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3L-01603.DUP_a046a513.RNA-Seq.transcriptome.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087030006 54e92824-8d82-483f-afaa-f49d06b74a97.rna_seq.transcriptome.gdc_realn.bam 9884765044 BAM transcriptome harmonized CPTAC3 6c86fbd9-0579-442c-bbb4-bd45dd1e586b d602860fb3c218f9adc9b56016dd9122 { 'aliquot_tag': 'DUP_a046a513', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01603.DUP_d999132.MethArray.Green.T C3L-01603 CCRCC Methylation Array tumor CPT0087020009 204367470132_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 027f2f66-c51f-4876-9234-8c39721c605a f134a683d4f790e2e9494047664b89a1 { 'aliquot_tag': 'DUP_d999132', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01603.DUP_d999132.MethArray.Red.T C3L-01603 CCRCC Methylation Array tumor CPT0087020009 204367470132_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 3c154978-4a64-4756-add3-4600afc99de0 a227e27fa39ae3ca8eb5399e1a660276 { 'aliquot_tag': 'DUP_d999132', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -7440,12 +8082,12 @@ C3L-01603.miRNA-Seq.T C3L-01603 CCRCC miRNA-Seq tumor CPT0087040006 181108_UNC31 C3L-01603.miRNA-Seq.T.hg38 C3L-01603 CCRCC miRNA-Seq tumor CPT0087040006 99d67dc7-cbc4-4b62-a36f-73ef4819de16_mirnaseq_gdc_realn.bam 237606656 BAM harmonized CPTAC3 2e5f44ac-d682-4d51-a436-4647f8a0a67f b9214798234cf374674f1edf2cef51e9 { 'aliquot_tag': 'ALQ_12667903', 'gdc_sample_type': 'Primary Tumor' } C3L-01603.RNA-Seq.chimeric.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 16427572-3a4c-4035-a5f9-246e427653cc.rna_seq.chimeric.gdc_realn.bam 90081201 BAM chimeric harmonized CPTAC3 8f41e2eb-892b-4c05-bdf2-59aa9ee24538 eaccd3fb9e764d5d2cbbf33b3cefbb5d { 'aliquot_tag': 'ALQ_2f0650b3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01603.RNA-Seq.chimeric.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 0fc6103c-8bf1-47ca-b89a-344bf5346f80.rna_seq.chimeric.gdc_realn.bam 33819771 BAM chimeric harmonized CPTAC3 dd0be843-5aa8-4a2b-902b-2cceeffdbc98 68ea749895fa8ab0478f8ebd25977858 { 'aliquot_tag': 'ALQ_12667903', 'gdc_sample_type': 'Primary Tumor' } -C3L-01603.RNA-Seq.genomic.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 16427572-3a4c-4035-a5f9-246e427653cc.rna_seq.genomic.gdc_realn.bam 9736260643 BAM genomic harmonized CPTAC3 bea4e88b-3ebd-4420-bfe0-a8c4bd75d83b 5ebaf3b36a9c48f2f8d4bc5522e4c645 { 'aliquot_tag': 'ALQ_2f0650b3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01603.RNA-Seq.genomic.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 16427572-3a4c-4035-a5f9-246e427653cc.rna_seq.genomic.gdc_realn.bam 9736260643 BAM genomic harmonized CPTAC3 e6cbaffc-d26d-44a9-800e-5642fad52678 5ebaf3b36a9c48f2f8d4bc5522e4c645 { 'aliquot_tag': 'ALQ_2f0650b3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01603.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 0fc6103c-8bf1-47ca-b89a-344bf5346f80.rna_seq.genomic.gdc_realn.bam 6788163686 BAM genomic harmonized CPTAC3 51b8cd08-4b69-4563-86c4-398312b917d6 546b3fd65949d50ded4373b5577c89ca { 'aliquot_tag': 'ALQ_12667903', 'gdc_sample_type': 'Primary Tumor' } -C3L-01603.RNA-Seq.R1_L002.A C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L002_R1_001.fastq.gz 4805210218 FASTQ R1_L002 unaligned CPTAC3 e138348f-c1aa-4865-a8bc-1784557a4f89 b78996c2974732454a71b01d0bbc3993 { 'aliquot_tag': 'ALQ_2f0650b3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01603.RNA-Seq.R1_L005.T C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 171011_UNC31-K00269_0086_AHLJLCBBXX_CGTACG_S15_L005_R1_001.fastq.gz 3431472766 FASTQ R1_L005 unaligned CPTAC3 2fec763c-44ca-4f62-ac76-cf3f28d272c4 2a77623a01dd9519ecd8789144a45ce1 { 'aliquot_tag': 'ALQ_12667903', 'gdc_sample_type': 'Primary Tumor' } -C3L-01603.RNA-Seq.R2_L002.A C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L002_R2_001.fastq.gz 5008820276 FASTQ R2_L002 unaligned CPTAC3 23bf8a0e-ebc4-4f6a-978f-a04a170d9979 d914b98c27bc4ffb723f619c6e34f5ee { 'aliquot_tag': 'ALQ_2f0650b3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01603.RNA-Seq.R2_L005.T C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 171011_UNC31-K00269_0086_AHLJLCBBXX_CGTACG_S15_L005_R2_001.fastq.gz 3674265253 FASTQ R2_L005 unaligned CPTAC3 d09aa237-4266-4f20-b503-82f401998031 64ed16d58ca5fd37c3ffb016bc78e833 { 'aliquot_tag': 'ALQ_12667903', 'gdc_sample_type': 'Primary Tumor' } +C3L-01603.RNA-Seq.R1_L002.A C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L002_R1_001.fastq.gz 4805210218 FASTQ R1_L002 unaligned CPTAC3 e138348f-c1aa-4865-a8bc-1784557a4f89 b78996c2974732454a71b01d0bbc3993 { 'aliquot_tag': 'ALQ_2f0650b3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01603.RNA-Seq.R1_L005.T C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 171011_UNC31-K00269_0086_AHLJLCBBXX_CGTACG_S15_L005_R1_001.fastq.gz 3431472766 FASTQ R1_L005 unaligned CPTAC3 2fec763c-44ca-4f62-ac76-cf3f28d272c4 2a77623a01dd9519ecd8789144a45ce1 { 'aliquot_tag': 'ALQ_12667903', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01603.RNA-Seq.R2_L002.A C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L002_R2_001.fastq.gz 5008820276 FASTQ R2_L002 unaligned CPTAC3 23bf8a0e-ebc4-4f6a-978f-a04a170d9979 d914b98c27bc4ffb723f619c6e34f5ee { 'aliquot_tag': 'ALQ_2f0650b3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01603.RNA-Seq.R2_L005.T C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 171011_UNC31-K00269_0086_AHLJLCBBXX_CGTACG_S15_L005_R2_001.fastq.gz 3674265253 FASTQ R2_L005 unaligned CPTAC3 d09aa237-4266-4f20-b503-82f401998031 64ed16d58ca5fd37c3ffb016bc78e833 { 'aliquot_tag': 'ALQ_12667903', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-01603.RNA-Seq.transcriptome.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal CPT0087050006 16427572-3a4c-4035-a5f9-246e427653cc.rna_seq.transcriptome.gdc_realn.bam 11969381174 BAM transcriptome harmonized CPTAC3 d2a7d806-0c48-4784-b8a9-1bee7db7ca9a a5529929ea6fb2525da14c0d14d231df { 'aliquot_tag': 'ALQ_2f0650b3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01603.RNA-Seq.transcriptome.T.hg38 C3L-01603 CCRCC RNA-Seq tumor CPT0087040006 0fc6103c-8bf1-47ca-b89a-344bf5346f80.rna_seq.transcriptome.gdc_realn.bam 9765004309 BAM transcriptome harmonized CPTAC3 3299a8ff-578a-4d77-b479-83dc462a0ded bb5352e04e1a99cc026fdba81a3b3e97 { 'aliquot_tag': 'ALQ_12667903', 'gdc_sample_type': 'Primary Tumor' } C3L-01603.WGS.A C3L-01603 CCRCC WGS tissue_normal CPT0087050009 CPT0087050009.WholeGenome.RP-1303.bam 55672970227 BAM aligned CPTAC3 8e2132c0-346c-4a09-8519-6550d31b072e be9d4a19a5590a71cced5166f2b7a8ec { 'aliquot_tag': 'ALQ_bfb94d22', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -7464,11 +8106,11 @@ C3L-01604.MethArray.Green.T C3L-01604 UCEC Methylation Array tumor CPT0086410009 C3L-01604.MethArray.Red.T C3L-01604 UCEC Methylation Array tumor CPT0086410009 202176290105_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 04d1f4a6-3ecd-4a25-9645-89e8f8e9a7fd aa7e89b762ed07c7ecaf28d6558d5f4b { 'aliquot_tag': 'ALQ_77dfa240', 'gdc_sample_type': 'Primary Tumor' } C3L-01604.miRNA-Seq.T C3L-01604 UCEC miRNA-Seq tumor CPT0086410006 181012_UNC32-K00270_0124_AH223CBBXY_TCGAAG_S20_L006_R1_001.unaln.bam 178643289 BAM unaligned CPTAC3 94a75942-f76e-40cf-a313-d1678c67cd9e 7ade5c0fbaff224ba83883337029a43a { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor' } C3L-01604.miRNA-Seq.T.hg38 C3L-01604 UCEC miRNA-Seq tumor CPT0086410006 9f2715d0-bed5-418c-a8d1-a8eba4e4a33d_mirnaseq_gdc_realn.bam 193305638 BAM harmonized CPTAC3 2df97c6c-9582-442d-9af7-f2626d278a7c a10d4f0e2fb7be8f7139d77355f3d088 { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01604.RNA-Seq.chimeric.T.hg38 C3L-01604 UCEC RNA-Seq tumor CPT0086410006 5a5352e1-9e9c-4f10-8e54-a5b8290ed766.rna_seq.chimeric.gdc_realn.bam 36760410 BAM chimeric harmonized CPTAC3 a8e3c647-59de-4c98-80ca-931eedb97aa8 75cb92d32f0e999111beae39dfb2b7ac { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01604.RNA-Seq.genomic.T.hg38 C3L-01604 UCEC RNA-Seq tumor CPT0086410006 5a5352e1-9e9c-4f10-8e54-a5b8290ed766.rna_seq.genomic.gdc_realn.bam 9461203096 BAM genomic harmonized CPTAC3 9eaf6fb7-9379-4cfa-b0b8-2ad720a028e9 629d2cb733bb6312e28b4dbeb627805b { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01604.RNA-Seq.R1_L003.T C3L-01604 UCEC RNA-Seq tumor CPT0086410006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATCACG_S9_L003_R1_001.fastq.gz 4638349765 FASTQ R1_L003 unaligned CPTAC3 84c24cd9-3510-4745-9c98-8d3d9e208bb6 12fe761d82006d5999112eb7e7f2a1d4 { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01604.RNA-Seq.R2_L003.T C3L-01604 UCEC RNA-Seq tumor CPT0086410006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATCACG_S9_L003_R2_001.fastq.gz 4632559351 FASTQ R2_L003 unaligned CPTAC3 4e851cad-1fdf-4ea8-af7c-97f97b8827b9 b63eb69de0fb0df7edca26de45233e3b { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor' } -C3L-01604.RNA-Seq.transcriptome.T.hg38 C3L-01604 UCEC RNA-Seq tumor CPT0086410006 5a5352e1-9e9c-4f10-8e54-a5b8290ed766.rna_seq.transcriptome.gdc_realn.bam 9736217895 BAM transcriptome harmonized CPTAC3 ae8b9107-76a2-411c-9710-b513310ad0e3 6fcd4adbdd3cc384ebf4992b8a0f9c04 { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01604.RNA-Seq.chimeric.T.hg38 C3L-01604 UCEC RNA-Seq tumor CPT0086410006 56b21867-8512-49a5-b625-890f05c51e82.rna_seq.chimeric.gdc_realn.bam 36746918 BAM chimeric harmonized CPTAC3 03ca5e1d-0a78-450a-bda2-ad1fc2604542 c883418825f72e2bd4b3519f47325011 { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01604.RNA-Seq.genomic.T.hg38 C3L-01604 UCEC RNA-Seq tumor CPT0086410006 56b21867-8512-49a5-b625-890f05c51e82.rna_seq.genomic.gdc_realn.bam 9463004322 BAM genomic harmonized CPTAC3 44f93d83-8698-4a17-8222-969d5bb83c9f f6bf4043acfcb7ed954e96881b27e302 { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor' } +C3L-01604.RNA-Seq.R1_L003.T C3L-01604 UCEC RNA-Seq tumor CPT0086410006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATCACG_S9_L003_R1_001.fastq.gz 4638349765 FASTQ R1_L003 unaligned CPTAC3 84c24cd9-3510-4745-9c98-8d3d9e208bb6 12fe761d82006d5999112eb7e7f2a1d4 { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01604.RNA-Seq.R2_L003.T C3L-01604 UCEC RNA-Seq tumor CPT0086410006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATCACG_S9_L003_R2_001.fastq.gz 4632559351 FASTQ R2_L003 unaligned CPTAC3 4e851cad-1fdf-4ea8-af7c-97f97b8827b9 b63eb69de0fb0df7edca26de45233e3b { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01604.RNA-Seq.transcriptome.T.hg38 C3L-01604 UCEC RNA-Seq tumor CPT0086410006 56b21867-8512-49a5-b625-890f05c51e82.rna_seq.transcriptome.gdc_realn.bam 11054815581 BAM transcriptome harmonized CPTAC3 2d53bf5f-88e8-4dd8-aef4-f7da2927e6ba 769eabc78aafcd107dfd49010ce97473 { 'aliquot_tag': 'ALQ_e760bfd1', 'gdc_sample_type': 'Primary Tumor' } C3L-01604.WGS.N C3L-01604 UCEC WGS blood_normal CPT0087400002 CPT0087400002.WholeGenome.RP-1303.bam 65126664193 BAM aligned CPTAC3 0f7daca5-248c-4730-aa84-646fe5ce042f d7c9d1fa0b3a10ac6695853a63ec1e1e { 'aliquot_tag': 'ALQ_7b1a59cc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01604.WGS.N.hg38 C3L-01604 UCEC WGS blood_normal CPT0087400002 906fd915-ba9a-4efc-9783-e656e5bf0c3a_gdc_realn.bam 97598478509 BAM harmonized CPTAC3 202bb7e0-8cb6-42b8-879b-2f20b59d5b9b 062d10411c5e4566b91b9b422f897eaf { 'aliquot_tag': 'ALQ_7b1a59cc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01604.WGS.T C3L-01604 UCEC WGS tumor CPT0086410009 CPT0086410009.WholeGenome.RP-1303.bam 80910353358 BAM aligned CPTAC3 c91ed8c9-6cab-4612-8601-073bcab41ad1 cce11407b677cd6f66a25a6b9eefdc4d { 'aliquot_tag': 'ALQ_77dfa240', 'gdc_sample_type': 'Primary Tumor' } @@ -7487,12 +8129,12 @@ C3L-01606.miRNA-Seq.T C3L-01606 LSCC miRNA-Seq tumor CPT0086260006 180724_UNC32- C3L-01606.miRNA-Seq.T.hg38 C3L-01606 LSCC miRNA-Seq tumor CPT0086260006 f966dbf7-37a2-4484-ad14-d3af77efa634_mirnaseq_gdc_realn.bam 253899386 BAM harmonized CPTAC3 16174d89-5ba0-44e7-b183-550c2a23f894 79fc73c3db914fbc5ed47c88b75a3e94 { 'aliquot_tag': 'ALQ_831980dc', 'gdc_sample_type': 'Primary Tumor' } C3L-01606.RNA-Seq.chimeric.A.hg38 C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 7c6b0b12-2caf-4bff-8e9b-050f1f903a16.rna_seq.chimeric.gdc_realn.bam 68104428 BAM chimeric harmonized CPTAC3 431751d3-009c-4e46-b77f-603184b4e08b c8a80206945be970442ee7ffeba63608 { 'aliquot_tag': 'ALQ_2ec6b4fd', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01606.RNA-Seq.chimeric.T.hg38 C3L-01606 LSCC RNA-Seq tumor CPT0086260006 08463836-304d-4c01-870d-4cd8093119a1.rna_seq.chimeric.gdc_realn.bam 49434752 BAM chimeric harmonized CPTAC3 140454bd-9b93-473f-8dee-5009aea3778e 0f7089906935e901f2958a484f41a544 { 'aliquot_tag': 'ALQ_831980dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-01606.RNA-Seq.genomic.A.hg38 C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 7c6b0b12-2caf-4bff-8e9b-050f1f903a16.rna_seq.genomic.gdc_realn.bam 13213850824 BAM genomic harmonized CPTAC3 fc1f04a2-523c-48d1-9ecc-1eebaf60d2d8 8296ad0e45f867c87b5bf8fcad32bc57 { 'aliquot_tag': 'ALQ_2ec6b4fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01606.RNA-Seq.genomic.T.hg38 C3L-01606 LSCC RNA-Seq tumor CPT0086260006 08463836-304d-4c01-870d-4cd8093119a1.rna_seq.genomic.gdc_realn.bam 7864484823 BAM genomic harmonized CPTAC3 9ad2ab90-c683-4280-b743-c4747780779b f0dcd0df7f5d454e2300ae0366cf29cf { 'aliquot_tag': 'ALQ_831980dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-01606.RNA-Seq.R1_L003.A C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 5799637191 FASTQ R1_L003 unaligned CPTAC3 1931113f-9002-4201-ad55-f44a17b154c9 49ee978274a24c04fb493077ec3e45b8 { 'aliquot_tag': 'ALQ_2ec6b4fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01606.RNA-Seq.R1_L003.T C3L-01606 LSCC RNA-Seq tumor CPT0086260006 171116_UNC31-K00269_0093_BHMFKJBBXX_CTTGTA_S12_L003_R1_001.fastq.gz 3687206451 FASTQ R1_L003 unaligned CPTAC3 528c9b3b-16a5-43b4-b247-d51421959853 2766cdc423074162385abefccb1796e9 { 'aliquot_tag': 'ALQ_831980dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-01606.RNA-Seq.R2_L003.A C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 6356112632 FASTQ R2_L003 unaligned CPTAC3 9b575cdb-efc4-4b96-8ff9-7554429c7731 15a060e8801c4146d85868b514cbba54 { 'aliquot_tag': 'ALQ_2ec6b4fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01606.RNA-Seq.R2_L003.T C3L-01606 LSCC RNA-Seq tumor CPT0086260006 171116_UNC31-K00269_0093_BHMFKJBBXX_CTTGTA_S12_L003_R2_001.fastq.gz 4081591925 FASTQ R2_L003 unaligned CPTAC3 e741edb3-6ff0-457f-9cbe-4de09b7919f7 0e3c8008716009ea58bb0278c58c9575 { 'aliquot_tag': 'ALQ_831980dc', 'gdc_sample_type': 'Primary Tumor' } +C3L-01606.RNA-Seq.genomic.A.hg38 C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 7c6b0b12-2caf-4bff-8e9b-050f1f903a16.rna_seq.genomic.gdc_realn.bam 13213850824 BAM genomic harmonized CPTAC3 3acae410-e9ea-43dd-94fa-99be8461fe43 8296ad0e45f867c87b5bf8fcad32bc57 { 'aliquot_tag': 'ALQ_2ec6b4fd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01606.RNA-Seq.genomic.T.hg38 C3L-01606 LSCC RNA-Seq tumor CPT0086260006 08463836-304d-4c01-870d-4cd8093119a1.rna_seq.genomic.gdc_realn.bam 7864484823 BAM genomic harmonized CPTAC3 e9dfed0c-8b6a-48ef-bfd5-31633e3eaf32 f0dcd0df7f5d454e2300ae0366cf29cf { 'aliquot_tag': 'ALQ_831980dc', 'gdc_sample_type': 'Primary Tumor' } +C3L-01606.RNA-Seq.R1_L003.A C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 5799637191 FASTQ R1_L003 unaligned CPTAC3 1931113f-9002-4201-ad55-f44a17b154c9 49ee978274a24c04fb493077ec3e45b8 { 'aliquot_tag': 'ALQ_2ec6b4fd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-01606.RNA-Seq.R1_L003.T C3L-01606 LSCC RNA-Seq tumor CPT0086260006 171116_UNC31-K00269_0093_BHMFKJBBXX_CTTGTA_S12_L003_R1_001.fastq.gz 3687206451 FASTQ R1_L003 unaligned CPTAC3 528c9b3b-16a5-43b4-b247-d51421959853 2766cdc423074162385abefccb1796e9 { 'aliquot_tag': 'ALQ_831980dc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01606.RNA-Seq.R2_L003.A C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 6356112632 FASTQ R2_L003 unaligned CPTAC3 9b575cdb-efc4-4b96-8ff9-7554429c7731 15a060e8801c4146d85868b514cbba54 { 'aliquot_tag': 'ALQ_2ec6b4fd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-01606.RNA-Seq.R2_L003.T C3L-01606 LSCC RNA-Seq tumor CPT0086260006 171116_UNC31-K00269_0093_BHMFKJBBXX_CTTGTA_S12_L003_R2_001.fastq.gz 4081591925 FASTQ R2_L003 unaligned CPTAC3 e741edb3-6ff0-457f-9cbe-4de09b7919f7 0e3c8008716009ea58bb0278c58c9575 { 'aliquot_tag': 'ALQ_831980dc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-01606.RNA-Seq.transcriptome.A.hg38 C3L-01606 LSCC RNA-Seq tissue_normal CPT0086270009 7c6b0b12-2caf-4bff-8e9b-050f1f903a16.rna_seq.transcriptome.gdc_realn.bam 15342947586 BAM transcriptome harmonized CPTAC3 6ac96a4e-fdae-4280-891d-2448ec5a2e01 56288463329be6e79bf5cdf52ece9d94 { 'aliquot_tag': 'ALQ_2ec6b4fd', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01606.RNA-Seq.transcriptome.T.hg38 C3L-01606 LSCC RNA-Seq tumor CPT0086260006 08463836-304d-4c01-870d-4cd8093119a1.rna_seq.transcriptome.gdc_realn.bam 9073473362 BAM transcriptome harmonized CPTAC3 214cefdd-5fd7-4ec2-ba6a-00dbf3f9b9b4 defe0346e67def904253f2920dc04ff7 { 'aliquot_tag': 'ALQ_831980dc', 'gdc_sample_type': 'Primary Tumor' } C3L-01606.WGS.A C3L-01606 LSCC WGS tissue_normal CPT0086270006 CPT0086270006.WholeGenome.RP-1303.bam 53290753540 BAM aligned CPTAC3 27312ecd-da82-4fc6-8d47-f7b99851071c 7109f25120b550e320fdd1c84fcc47cf { 'aliquot_tag': 'ALQ_be79a96c', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -7516,9 +8158,9 @@ C3L-01607.DUP_12e7750f.WXS.T.hg38 C3L-01607 CCRCC WXS tumor CPT0092180009 9a22a7 C3L-01607.DUP_8ff4f.miRNA-Seq.T C3L-01607 CCRCC miRNA-Seq tumor CPT0092170006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCATTC_S18_L003_R1_001.unaln.bam 289966674 BAM unaligned CPTAC3 3fd361a6-5a7d-45f9-bea2-45fdce426b5d d488f18e64dead8901de6383750cc1eb { 'aliquot_tag': 'DUP_8ff4f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01607.DUP_8ff4f.miRNA-Seq.T.hg38 C3L-01607 CCRCC miRNA-Seq tumor CPT0092170006 a8f0aa9e-bac0-4c1e-9cfe-561107c699ef_mirnaseq_gdc_realn.bam 322983752 BAM harmonized CPTAC3 45cdfd0b-c214-454c-a16e-71bb1cb1a411 97e1d3501d102a9e510b9a645d27a6a8 { 'aliquot_tag': 'DUP_8ff4f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01607.DUP_8ff4f.RNA-Seq.chimeric.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 155e6d67-2aa5-4a49-8859-123f23097162.rna_seq.chimeric.gdc_realn.bam 251117851 BAM chimeric harmonized CPTAC3 b3be073a-1dfc-457f-ba86-a6c943163f84 ebd40a764dfbd62d880e7cb17c4ccb7b { 'aliquot_tag': 'DUP_8ff4f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01607.DUP_8ff4f.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 155e6d67-2aa5-4a49-8859-123f23097162.rna_seq.genomic.gdc_realn.bam 7339179496 BAM genomic harmonized CPTAC3 35cdd520-9a39-48ba-a3a3-f5afd3dc408b 9415506a3aae32c03194b0ccf3108d8c { 'aliquot_tag': 'DUP_8ff4f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01607.DUP_8ff4f.RNA-Seq.R1_L007.T C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGGCATG-AAGGTACC_S26_L007_R1_001.fastq.gz 3424823977 FASTQ R1_L007 unaligned CPTAC3 d7b825fc-a5a5-415e-bd76-2356d4df3d64 41c50f86e6ebcf768515e24c08a75a60 { 'aliquot_tag': 'DUP_8ff4f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01607.DUP_8ff4f.RNA-Seq.R2_L007.T C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGGCATG-AAGGTACC_S26_L007_R2_001.fastq.gz 4061944604 FASTQ R2_L007 unaligned CPTAC3 fc584b2b-cb19-41da-a8bd-fe57c972f412 1f5f4e75bdc1b2690a7aa502a8e687e3 { 'aliquot_tag': 'DUP_8ff4f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01607.DUP_8ff4f.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 155e6d67-2aa5-4a49-8859-123f23097162.rna_seq.genomic.gdc_realn.bam 7339179496 BAM genomic harmonized CPTAC3 6fcffcdb-798f-45f6-962b-f019488244c8 9415506a3aae32c03194b0ccf3108d8c { 'aliquot_tag': 'DUP_8ff4f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01607.DUP_8ff4f.RNA-Seq.R1_L007.T C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGGCATG-AAGGTACC_S26_L007_R1_001.fastq.gz 3424823977 FASTQ R1_L007 unaligned CPTAC3 d7b825fc-a5a5-415e-bd76-2356d4df3d64 41c50f86e6ebcf768515e24c08a75a60 { 'aliquot_tag': 'DUP_8ff4f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3L-01607.DUP_8ff4f.RNA-Seq.R2_L007.T C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGGCATG-AAGGTACC_S26_L007_R2_001.fastq.gz 4061944604 FASTQ R2_L007 unaligned CPTAC3 fc584b2b-cb19-41da-a8bd-fe57c972f412 1f5f4e75bdc1b2690a7aa502a8e687e3 { 'aliquot_tag': 'DUP_8ff4f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3L-01607.DUP_8ff4f.RNA-Seq.transcriptome.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092170006 155e6d67-2aa5-4a49-8859-123f23097162.rna_seq.transcriptome.gdc_realn.bam 8818792404 BAM transcriptome harmonized CPTAC3 ef4bd076-568b-456d-a282-db0584dee055 9204fb04f9521750af2e54601c04665d { 'aliquot_tag': 'DUP_8ff4f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01607.DUP_90b7e2de.MethArray.Green.T C3L-01607 CCRCC Methylation Array tumor CPT0092170009 204372030071_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 6a552b5f-0ba7-4469-a729-981ce12973bc 17aae55469e47ecfe65d831d255b27d5 { 'aliquot_tag': 'DUP_90b7e2de', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01607.DUP_90b7e2de.MethArray.Red.T C3L-01607 CCRCC Methylation Array tumor CPT0092170009 204372030071_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 4b5e8dc3-a4ee-4066-9c3a-06502aa123a2 a0ee2bb9b8830104f090aef70b5c1250 { 'aliquot_tag': 'DUP_90b7e2de', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -7529,9 +8171,9 @@ C3L-01607.DUP_90b7e2de.WXS.T.hg38 C3L-01607 CCRCC WXS tumor CPT0092170009 6374c0 C3L-01607.DUP_eb29ad50.miRNA-Seq.T C3L-01607 CCRCC miRNA-Seq tumor CPT0092180013 200526_UNC32-K00270_0248_BHH7WFBBXY_TATAAT_S17_L001_R1_001.unaln.bam 209689675 BAM unaligned CPTAC3 9a4d4eab-a784-41bc-af14-9f222a157562 f30b3b172328e96bd7a2dd8e5bd3fdae { 'aliquot_tag': 'DUP_eb29ad50', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01607.DUP_eb29ad50.miRNA-Seq.T.hg38 C3L-01607 CCRCC miRNA-Seq tumor CPT0092180013 32a27a3c-e117-4113-a61c-700353fa31ee_mirnaseq_gdc_realn.bam 235840984 BAM harmonized CPTAC3 45f1077a-9184-48a9-b14b-4b8d5ea99a16 ee6832e71cbca027c91f8fcab6740e2e { 'aliquot_tag': 'DUP_eb29ad50', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01607.DUP_eb29ad50.RNA-Seq.chimeric.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 ab0502c3-a757-4c0d-b647-be30615f627d.rna_seq.chimeric.gdc_realn.bam 56427916 BAM chimeric harmonized CPTAC3 4ceb66af-fb92-444a-a211-9c027df5adc9 0bf66247f8363211a7b70d4a98e77248 { 'aliquot_tag': 'DUP_eb29ad50', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01607.DUP_eb29ad50.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 ab0502c3-a757-4c0d-b647-be30615f627d.rna_seq.genomic.gdc_realn.bam 8938712235 BAM genomic harmonized CPTAC3 3cb5f5e9-ca40-4145-8ef5-76b0b023f5ad 6f5651f3ee80c57701d49c5545ceac5a { 'aliquot_tag': 'DUP_eb29ad50', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01607.DUP_eb29ad50.RNA-Seq.R1_L001.T C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 200608_UNC31-K00269_0281_AHH5NFBBXY_ACGCACCT-GGTGAAGG_S4_L001_R1_001.fastq.gz 4209730181 FASTQ R1_L001 unaligned CPTAC3 e028725b-d0c9-4181-8f50-fd1c079da914 4383ded30dc76421e5a4c844782c60bc { 'aliquot_tag': 'DUP_eb29ad50', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01607.DUP_eb29ad50.RNA-Seq.R2_L001.T C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 200608_UNC31-K00269_0281_AHH5NFBBXY_ACGCACCT-GGTGAAGG_S4_L001_R2_001.fastq.gz 5046398238 FASTQ R2_L001 unaligned CPTAC3 5613d162-73a9-4540-9011-1d9ae35f221d f6e0ace8886ef6d64e8b4e08718f6066 { 'aliquot_tag': 'DUP_eb29ad50', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01607.DUP_eb29ad50.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 ab0502c3-a757-4c0d-b647-be30615f627d.rna_seq.genomic.gdc_realn.bam 8938712235 BAM genomic harmonized CPTAC3 16b85f10-a4da-47d3-be5e-15baca5c1057 6f5651f3ee80c57701d49c5545ceac5a { 'aliquot_tag': 'DUP_eb29ad50', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01607.DUP_eb29ad50.RNA-Seq.R1_L001.T C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 200608_UNC31-K00269_0281_AHH5NFBBXY_ACGCACCT-GGTGAAGG_S4_L001_R1_001.fastq.gz 4209730181 FASTQ R1_L001 unaligned CPTAC3 e028725b-d0c9-4181-8f50-fd1c079da914 4383ded30dc76421e5a4c844782c60bc { 'aliquot_tag': 'DUP_eb29ad50', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3L-01607.DUP_eb29ad50.RNA-Seq.R2_L001.T C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 200608_UNC31-K00269_0281_AHH5NFBBXY_ACGCACCT-GGTGAAGG_S4_L001_R2_001.fastq.gz 5046398238 FASTQ R2_L001 unaligned CPTAC3 5613d162-73a9-4540-9011-1d9ae35f221d f6e0ace8886ef6d64e8b4e08718f6066 { 'aliquot_tag': 'DUP_eb29ad50', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3L-01607.DUP_eb29ad50.RNA-Seq.transcriptome.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092180013 ab0502c3-a757-4c0d-b647-be30615f627d.rna_seq.transcriptome.gdc_realn.bam 12406412615 BAM transcriptome harmonized CPTAC3 6468f73f-e77e-40ec-a78c-73fd506e5732 457f0e8766028b158e35654370d42ce2 { 'aliquot_tag': 'DUP_eb29ad50', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01607.MethArray.Green.A C3L-01607 CCRCC Methylation Array tissue_normal CPT0092190013 204930630078_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 853bc0e7-3685-4de3-9b7a-cba250a37598 e835313cfed0886b486593a99352da7c { 'aliquot_tag': 'ALQ_d64984e0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01607.MethArray.Green.T C3L-01607 CCRCC Methylation Array tumor CPT0092160009 202234380069_R04C01_Grn.idat 13676246 IDAT Green NA CPTAC3 f2629a18-c437-4c62-9f0f-f1c0ddd24ca1 2b2ee282b495ac554a2c50c37af09232 { 'aliquot_tag': 'ALQ_add7cb6e', 'gdc_sample_type': 'Primary Tumor' } @@ -7543,12 +8185,12 @@ C3L-01607.miRNA-Seq.T C3L-01607 CCRCC miRNA-Seq tumor CPT0092160006 180724_UNC32 C3L-01607.miRNA-Seq.T.hg38 C3L-01607 CCRCC miRNA-Seq tumor CPT0092160006 c856b4cb-1fe4-4390-9158-a520a64b47e8_mirnaseq_gdc_realn.bam 278056745 BAM harmonized CPTAC3 c207fcab-e82e-46cb-a603-ecb0798bee61 5094da17f3bbc4db5c3c5150864855f9 { 'aliquot_tag': 'ALQ_3d68d6ff', 'gdc_sample_type': 'Primary Tumor' } C3L-01607.RNA-Seq.chimeric.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 4d54009d-d480-44e2-baa3-6d64f8520095.rna_seq.chimeric.gdc_realn.bam 74029524 BAM chimeric harmonized CPTAC3 8e1b3c27-b517-4472-98d2-03818b5da016 b14f0b1fb13b65202895b666162c4229 { 'aliquot_tag': 'ALQ_bf38412e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01607.RNA-Seq.chimeric.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 5b33af04-44c5-442e-a57b-e80b92618333.rna_seq.chimeric.gdc_realn.bam 52200658 BAM chimeric harmonized CPTAC3 3313853c-bd8a-40fb-9490-9b7b52c642fc 81b5847310591108ae7423b6b1097ed6 { 'aliquot_tag': 'ALQ_3d68d6ff', 'gdc_sample_type': 'Primary Tumor' } -C3L-01607.RNA-Seq.genomic.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 4d54009d-d480-44e2-baa3-6d64f8520095.rna_seq.genomic.gdc_realn.bam 8936840514 BAM genomic harmonized CPTAC3 bc92a399-3d7e-4ca7-834f-90dcbe8fcdfc d875092aa76563186a331285a4181f9c { 'aliquot_tag': 'ALQ_bf38412e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01607.RNA-Seq.genomic.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 4d54009d-d480-44e2-baa3-6d64f8520095.rna_seq.genomic.gdc_realn.bam 8936840514 BAM genomic harmonized CPTAC3 fd4a3d86-92f3-4842-9ee7-ed69ec93d0f2 d875092aa76563186a331285a4181f9c { 'aliquot_tag': 'ALQ_bf38412e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01607.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 5b33af04-44c5-442e-a57b-e80b92618333.rna_seq.genomic.gdc_realn.bam 9458200955 BAM genomic harmonized CPTAC3 1366de85-d946-4fc8-96ad-9b0dfbc7b3de fbcd9407a6b997678e0fe46cc96aa052 { 'aliquot_tag': 'ALQ_3d68d6ff', 'gdc_sample_type': 'Primary Tumor' } -C3L-01607.RNA-Seq.R1_L001.A C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGAAA_S3_L001_R1_001.fastq.gz 4412072551 FASTQ R1_L001 unaligned CPTAC3 6c109f03-8177-45d3-a4a2-f19074ee4ed6 ebab80ce522598c42e935cac7151baa6 { 'aliquot_tag': 'ALQ_bf38412e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01607.RNA-Seq.R1_L006.T C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L006_R1_001.fastq.gz 4333613798 FASTQ R1_L006 unaligned CPTAC3 0cca5899-0e8e-48ad-86dd-613e61876cc8 65720f28e278fac21ca213bfcca00a30 { 'aliquot_tag': 'ALQ_3d68d6ff', 'gdc_sample_type': 'Primary Tumor' } -C3L-01607.RNA-Seq.R2_L001.A C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGAAA_S3_L001_R2_001.fastq.gz 4324449781 FASTQ R2_L001 unaligned CPTAC3 8c20a402-e741-42c8-9f58-d50da87cef25 1d6db40d0d4da9d28e097406d4000d1b { 'aliquot_tag': 'ALQ_bf38412e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01607.RNA-Seq.R2_L006.T C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L006_R2_001.fastq.gz 4832978770 FASTQ R2_L006 unaligned CPTAC3 ce2ab1d4-c67d-4eed-9a1a-66e753edff5b b9fe0d53ed8adcf4d869080224e7f7fc { 'aliquot_tag': 'ALQ_3d68d6ff', 'gdc_sample_type': 'Primary Tumor' } +C3L-01607.RNA-Seq.R1_L001.A C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGAAA_S3_L001_R1_001.fastq.gz 4412072551 FASTQ R1_L001 unaligned CPTAC3 6c109f03-8177-45d3-a4a2-f19074ee4ed6 ebab80ce522598c42e935cac7151baa6 { 'aliquot_tag': 'ALQ_bf38412e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-01607.RNA-Seq.R1_L006.T C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L006_R1_001.fastq.gz 4333613798 FASTQ R1_L006 unaligned CPTAC3 0cca5899-0e8e-48ad-86dd-613e61876cc8 65720f28e278fac21ca213bfcca00a30 { 'aliquot_tag': 'ALQ_3d68d6ff', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01607.RNA-Seq.R2_L001.A C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGAAA_S3_L001_R2_001.fastq.gz 4324449781 FASTQ R2_L001 unaligned CPTAC3 8c20a402-e741-42c8-9f58-d50da87cef25 1d6db40d0d4da9d28e097406d4000d1b { 'aliquot_tag': 'ALQ_bf38412e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-01607.RNA-Seq.R2_L006.T C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L006_R2_001.fastq.gz 4832978770 FASTQ R2_L006 unaligned CPTAC3 ce2ab1d4-c67d-4eed-9a1a-66e753edff5b b9fe0d53ed8adcf4d869080224e7f7fc { 'aliquot_tag': 'ALQ_3d68d6ff', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-01607.RNA-Seq.transcriptome.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal CPT0092190006 4d54009d-d480-44e2-baa3-6d64f8520095.rna_seq.transcriptome.gdc_realn.bam 10707839341 BAM transcriptome harmonized CPTAC3 da0435a2-0d93-4a66-9d52-f9de2ca38133 78d2d467f8198804fbce8480de295279 { 'aliquot_tag': 'ALQ_bf38412e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01607.RNA-Seq.transcriptome.T.hg38 C3L-01607 CCRCC RNA-Seq tumor CPT0092160006 5b33af04-44c5-442e-a57b-e80b92618333.rna_seq.transcriptome.gdc_realn.bam 10636384156 BAM transcriptome harmonized CPTAC3 05eb2c95-329c-4d9b-a8ee-72d991eb000f f58ea6b915530f4d50b9d3097c680bec { 'aliquot_tag': 'ALQ_3d68d6ff', 'gdc_sample_type': 'Primary Tumor' } C3L-01607.WGS.A C3L-01607 CCRCC WGS tissue_normal CPT0092190009 CPT0092190009.WholeGenome.RP-1303.bam 67316449992 BAM aligned CPTAC3 f01f2bf7-452f-4cbe-bf9d-dff68e34d85b abaa019e8fca4f995cdedfa95d595cf9 { 'aliquot_tag': 'ALQ_2f875cbf', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -7567,13 +8209,16 @@ C3L-01631.MethArray.Green.T C3L-01631 UCEC Methylation Array tumor CPT0091720009 C3L-01631.MethArray.Red.T C3L-01631 UCEC Methylation Array tumor CPT0091720009 202234380051_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 6c51a1b7-3ff1-4fcd-8d34-91bf052be2db 705481c9b73bfa4b1059ec4ab294b9bb { 'aliquot_tag': 'ALQ_bfe6942e', 'gdc_sample_type': 'Primary Tumor' } C3L-01631.miRNA-Seq.T C3L-01631 UCEC miRNA-Seq tumor CPT0091720006 180828_UNC32-K00270_0112_AHWTLNBBXX_GATCAG_S1_L006_R1_001.unaln.bam 199721113 BAM unaligned CPTAC3 9f1e509d-1e57-413f-8f8c-5615d31b0486 44f8cfd37888a3b019cca8ac0b48499c { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor' } C3L-01631.miRNA-Seq.T.hg38 C3L-01631 UCEC miRNA-Seq tumor CPT0091720006 be1ed6c4-0a9f-48bb-aec7-ec8f38f73059_mirnaseq_gdc_realn.bam 220292982 BAM harmonized CPTAC3 0f9d05aa-c597-4f2b-b2d7-7e0275cf54b3 a95e2f0aa75c98c64f63a7364384a054 { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01631.RNA-Seq.chimeric.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 70b920e8-25d7-4a11-b4de-f0388d60fdf3.rna_seq.chimeric.gdc_realn.bam 126798765 BAM chimeric harmonized CPTAC3 9bd4b1f4-b2f7-4a5b-a6dd-26662fb8c3f3 6739087cde25140ff8e2cfb12373df27 { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01631.RNA-Seq.genomic.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 70b920e8-25d7-4a11-b4de-f0388d60fdf3.rna_seq.genomic.gdc_realn.bam 9300341832 BAM genomic harmonized CPTAC3 a3094923-65eb-4e7c-88c3-11e645b91c80 1856b8cb2970587acdfac728271fde31 { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01631.RNA-Seq.R1_L008.T C3L-01631 UCEC RNA-Seq tumor CPT0091720006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L008_R1_001.fastq.gz 4370972526 FASTQ R1_L008 unaligned CPTAC3 0e012214-9883-4e4e-9d90-4ef8a046e5e8 a19bd3792ed583ebb024e21e47efefab { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01631.RNA-Seq.R1_.T C3L-01631 UCEC RNA-Seq tumor CPT0349950001 20210729_P3_D11_WB7988-Plate3_S47_R1_001.fastq.gz 3289724055 FASTQ R1_ unaligned CPTAC3 64a800c9-ba0d-455c-8252-c3adcfe79c20 1b5dca46e578b487d1ca25fc9c0ffc08 { 'aliquot_tag': 'ALQ_a870c60f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01631.RNA-Seq.R2_L008.T C3L-01631 UCEC RNA-Seq tumor CPT0091720006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L008_R2_001.fastq.gz 4766242841 FASTQ R2_L008 unaligned CPTAC3 9c8feb8a-c27d-4ffd-bb1c-352547902da7 426559d644521491bb2f5c34ae903852 { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01631.RNA-Seq.R2_.T C3L-01631 UCEC RNA-Seq tumor CPT0349950001 20210729_P3_D11_WB7988-Plate3_S47_R2_001.fastq.gz 3447026446 FASTQ R2_ unaligned CPTAC3 d3b7677d-3ed1-48d8-b582-b4f091ed5138 909caaef578847b982c8a496f9c059aa { 'aliquot_tag': 'ALQ_a870c60f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01631.RNA-Seq.transcriptome.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 70b920e8-25d7-4a11-b4de-f0388d60fdf3.rna_seq.transcriptome.gdc_realn.bam 10117592701 BAM transcriptome harmonized CPTAC3 4e6f8f6f-db63-4895-a61b-8f7b698d62a3 63ffd58ab09e354e778a92104c1fb585 { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01631.RNA-Seq.chimeric.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 35ce2929-b553-45cd-82ef-a6aa7d62975e.rna_seq.chimeric.gdc_realn.bam 126789377 BAM chimeric harmonized CPTAC3 b3d5d80b-4fa5-4413-b41b-4a8347423de0 927c6a7b292c0e344a3323ec34f4756f { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01631.RNA-Seq.chimeric.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0349950001 49208fec-9ba2-4235-b920-6ccb65c638eb.rna_seq.chimeric.gdc_realn.bam 64940527 BAM chimeric harmonized CPTAC3 d1962bc8-672c-44c6-9b57-62898d8a58c1 49cab8f3d231ea1ecff925a7f2797c27 { 'aliquot_tag': 'ALQ_a870c60f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01631.RNA-Seq.genomic.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 35ce2929-b553-45cd-82ef-a6aa7d62975e.rna_seq.genomic.gdc_realn.bam 9301532953 BAM genomic harmonized CPTAC3 e3664d14-0795-4f54-b9af-8767742dd695 4413be060442582fa6b510511c0e4f4e { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01631.RNA-Seq.genomic.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0349950001 49208fec-9ba2-4235-b920-6ccb65c638eb.rna_seq.genomic.gdc_realn.bam 5311578967 BAM genomic harmonized CPTAC3 7b72c326-1336-429a-a295-e14db153ff98 9616c6384bce12e27777da2f88544fd1 { 'aliquot_tag': 'ALQ_a870c60f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01631.RNA-Seq.R1_L008.T C3L-01631 UCEC RNA-Seq tumor CPT0091720006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L008_R1_001.fastq.gz 4370972526 FASTQ R1_L008 unaligned CPTAC3 0e012214-9883-4e4e-9d90-4ef8a046e5e8 a19bd3792ed583ebb024e21e47efefab { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01631.RNA-Seq.R2_L008.T C3L-01631 UCEC RNA-Seq tumor CPT0091720006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L008_R2_001.fastq.gz 4766242841 FASTQ R2_L008 unaligned CPTAC3 9c8feb8a-c27d-4ffd-bb1c-352547902da7 426559d644521491bb2f5c34ae903852 { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-01631.RNA-Seq.T C3L-01631 UCEC RNA-Seq tumor CPT0349950001 20210729_P3_D11_WB7988-Plate3_S47_R1_001.fastq.gz 3289724055 FASTQ unaligned CPTAC3 64a800c9-ba0d-455c-8252-c3adcfe79c20 1b5dca46e578b487d1ca25fc9c0ffc08 +C3L-01631.RNA-Seq.T C3L-01631 UCEC RNA-Seq tumor CPT0349950001 20210729_P3_D11_WB7988-Plate3_S47_R2_001.fastq.gz 3447026446 FASTQ unaligned CPTAC3 d3b7677d-3ed1-48d8-b582-b4f091ed5138 909caaef578847b982c8a496f9c059aa +C3L-01631.RNA-Seq.transcriptome.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0091720006 35ce2929-b553-45cd-82ef-a6aa7d62975e.rna_seq.transcriptome.gdc_realn.bam 11548739091 BAM transcriptome harmonized CPTAC3 916abc25-9de5-49a3-8d2e-a459a8279b58 e1a706dba16b09636401023cf71bf6b8 { 'aliquot_tag': 'ALQ_2f5989bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01631.RNA-Seq.transcriptome.T.hg38 C3L-01631 UCEC RNA-Seq tumor CPT0349950001 49208fec-9ba2-4235-b920-6ccb65c638eb.rna_seq.transcriptome.gdc_realn.bam 3203964968 BAM transcriptome harmonized CPTAC3 3c92465a-6cfd-484a-9b03-a2ee95de3f39 e52a1b2a2e65d0c38086802fab4aeaed { 'aliquot_tag': 'ALQ_a870c60f', 'gdc_sample_type': 'Primary Tumor' } C3L-01631.WGS.N C3L-01631 UCEC WGS blood_normal CPT0093650002 CPT0093650002.WholeGenome.RP-1303.bam 72888688170 BAM aligned CPTAC3 d461fece-090d-41ef-8a7b-06e67dca3b31 802d45a1b894df2b9652832ca69ea0b7 { 'aliquot_tag': 'ALQ_c6d7533a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01631.WGS.N.hg38 C3L-01631 UCEC WGS blood_normal CPT0093650002 b79a44e8-8e7c-49bb-9f8e-b16971f96338_wgs_gdc_realn.bam 106827500798 BAM harmonized CPTAC3 1a1e12a8-8bc5-45f0-9367-8f7cc32e5d97 fc6e456451a4556483fe93c0adf79ae6 { 'aliquot_tag': 'ALQ_c6d7533a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01631.WGS.T C3L-01631 UCEC WGS tumor CPT0091720009 CPT0091720009.WholeGenome.RP-1303.bam 65555996884 BAM aligned CPTAC3 0e4b564d-78c5-4765-9da3-97f050d4406d 8f83189be6a19baa42a1a48b88db9af0 { 'aliquot_tag': 'ALQ_bfe6942e', 'gdc_sample_type': 'Primary Tumor' } @@ -7592,12 +8237,12 @@ C3L-01632.miRNA-Seq.T C3L-01632 LUAD miRNA-Seq tumor CPT0086750006 180724_UNC32- C3L-01632.miRNA-Seq.T.hg38 C3L-01632 LUAD miRNA-Seq tumor CPT0086750006 8ade91d7-15cb-48ce-96dd-383a44f40dc2_mirnaseq_gdc_realn.bam 314633998 BAM harmonized CPTAC3 afdd682e-2f68-4781-ab72-1a164ac4d98d 90de9b1b57affa06f4d621c97c85f704 { 'aliquot_tag': 'ALQ_94746bbf', 'gdc_sample_type': 'Primary Tumor' } C3L-01632.RNA-Seq.chimeric.A.hg38 C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 5b831d4a-e3b9-4c64-ad8d-f5eca3519422.rna_seq.chimeric.gdc_realn.bam 41984843 BAM chimeric harmonized CPTAC3 f23935db-d7b7-4431-9d6b-e0a2ed7d8f0b c166d9cc89b91902bf1ca45b2e846bcc { 'aliquot_tag': 'ALQ_eeb438df', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01632.RNA-Seq.chimeric.T.hg38 C3L-01632 LUAD RNA-Seq tumor CPT0086750006 4113422e-e45d-42c2-8c19-4b6b9eaa7ad1.rna_seq.chimeric.gdc_realn.bam 33690784 BAM chimeric harmonized CPTAC3 ce1b8d6c-9df8-4b47-888f-502d4ab69baa 2a6eef6963d4f688ac86bb7672e639f8 { 'aliquot_tag': 'ALQ_94746bbf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01632.RNA-Seq.genomic.A.hg38 C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 5b831d4a-e3b9-4c64-ad8d-f5eca3519422.rna_seq.genomic.gdc_realn.bam 7978630316 BAM genomic harmonized CPTAC3 cda9793a-cf28-4c1a-ae8c-e59ecd756bfa cb65911a8260c37589b3945fbf0518f6 { 'aliquot_tag': 'ALQ_eeb438df', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01632.RNA-Seq.genomic.T.hg38 C3L-01632 LUAD RNA-Seq tumor CPT0086750006 4113422e-e45d-42c2-8c19-4b6b9eaa7ad1.rna_seq.genomic.gdc_realn.bam 9378195136 BAM genomic harmonized CPTAC3 2c949a7e-728e-4be3-8a2d-fc79b52a7332 515cb4670b3cac64fcc3cb6ba330c28b { 'aliquot_tag': 'ALQ_94746bbf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01632.RNA-Seq.R1_L002.T C3L-01632 LUAD RNA-Seq tumor CPT0086750006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L002_R1_001.fastq.gz 4446087855 FASTQ R1_L002 unaligned CPTAC3 4597a475-1afc-401c-a790-e2e641db12e8 560c00e727976be0a5cff70f16a03bcc { 'aliquot_tag': 'ALQ_94746bbf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01632.RNA-Seq.R1_L005.A C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 171215_UNC32-K00270_0072_AHN3THBBXX_GTCCGC_S16_L005_R1_001.fastq.gz 3797039600 FASTQ R1_L005 unaligned CPTAC3 239dc351-b231-4420-ad73-28f73918717c e4beff19033cea9201c3f1b354e7e641 { 'aliquot_tag': 'ALQ_eeb438df', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01632.RNA-Seq.R2_L002.T C3L-01632 LUAD RNA-Seq tumor CPT0086750006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L002_R2_001.fastq.gz 4965556419 FASTQ R2_L002 unaligned CPTAC3 7e688d8a-3506-4ff6-971c-3c1e5b717659 73a815bd039133773b8167edd9ac4a44 { 'aliquot_tag': 'ALQ_94746bbf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01632.RNA-Seq.R2_L005.A C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 171215_UNC32-K00270_0072_AHN3THBBXX_GTCCGC_S16_L005_R2_001.fastq.gz 4082882284 FASTQ R2_L005 unaligned CPTAC3 93f7e830-e290-4baa-8f75-e8d789413ca6 91c00a9e1ad893917a4a0fc4ccbfc872 { 'aliquot_tag': 'ALQ_eeb438df', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01632.RNA-Seq.genomic.A.hg38 C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 5b831d4a-e3b9-4c64-ad8d-f5eca3519422.rna_seq.genomic.gdc_realn.bam 7978630316 BAM genomic harmonized CPTAC3 4b2cb14d-cdfc-46d2-a477-a6529f5bb874 cb65911a8260c37589b3945fbf0518f6 { 'aliquot_tag': 'ALQ_eeb438df', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01632.RNA-Seq.genomic.T.hg38 C3L-01632 LUAD RNA-Seq tumor CPT0086750006 4113422e-e45d-42c2-8c19-4b6b9eaa7ad1.rna_seq.genomic.gdc_realn.bam 9378195136 BAM genomic harmonized CPTAC3 b7f76a51-ce8e-4c04-94b8-16b4a9a04f9f 515cb4670b3cac64fcc3cb6ba330c28b { 'aliquot_tag': 'ALQ_94746bbf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01632.RNA-Seq.R1_L002.T C3L-01632 LUAD RNA-Seq tumor CPT0086750006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L002_R1_001.fastq.gz 4446087855 FASTQ R1_L002 unaligned CPTAC3 4597a475-1afc-401c-a790-e2e641db12e8 560c00e727976be0a5cff70f16a03bcc { 'aliquot_tag': 'ALQ_94746bbf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01632.RNA-Seq.R1_L005.A C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 171215_UNC32-K00270_0072_AHN3THBBXX_GTCCGC_S16_L005_R1_001.fastq.gz 3797039600 FASTQ R1_L005 unaligned CPTAC3 239dc351-b231-4420-ad73-28f73918717c e4beff19033cea9201c3f1b354e7e641 { 'aliquot_tag': 'ALQ_eeb438df', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-01632.RNA-Seq.R2_L002.T C3L-01632 LUAD RNA-Seq tumor CPT0086750006 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L002_R2_001.fastq.gz 4965556419 FASTQ R2_L002 unaligned CPTAC3 7e688d8a-3506-4ff6-971c-3c1e5b717659 73a815bd039133773b8167edd9ac4a44 { 'aliquot_tag': 'ALQ_94746bbf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01632.RNA-Seq.R2_L005.A C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 171215_UNC32-K00270_0072_AHN3THBBXX_GTCCGC_S16_L005_R2_001.fastq.gz 4082882284 FASTQ R2_L005 unaligned CPTAC3 93f7e830-e290-4baa-8f75-e8d789413ca6 91c00a9e1ad893917a4a0fc4ccbfc872 { 'aliquot_tag': 'ALQ_eeb438df', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-01632.RNA-Seq.transcriptome.A.hg38 C3L-01632 LUAD RNA-Seq tissue_normal CPT0086770006 5b831d4a-e3b9-4c64-ad8d-f5eca3519422.rna_seq.transcriptome.gdc_realn.bam 9358861161 BAM transcriptome harmonized CPTAC3 c561992d-d50a-4af5-a6ef-b0678f395063 b366c243e2abad0b7090d830d7a6081a { 'aliquot_tag': 'ALQ_eeb438df', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01632.RNA-Seq.transcriptome.T.hg38 C3L-01632 LUAD RNA-Seq tumor CPT0086750006 4113422e-e45d-42c2-8c19-4b6b9eaa7ad1.rna_seq.transcriptome.gdc_realn.bam 15665397640 BAM transcriptome harmonized CPTAC3 ba0e999f-b01d-4c83-a145-85c39f631385 ee36502fcd48e8234e61c48b4d350abf { 'aliquot_tag': 'ALQ_94746bbf', 'gdc_sample_type': 'Primary Tumor' } C3L-01632.WGS.A C3L-01632 LUAD WGS tissue_normal CPT0086770009 CPT0086770009.WholeGenome.RP-1303.bam 64368846526 BAM aligned CPTAC3 6c6c6bef-9dbe-4f6a-a6f7-b340915d3caa 86466e046f2b9f8a63fda06b5f5a9c46 { 'aliquot_tag': 'ALQ_7e0b254e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -7616,13 +8261,16 @@ C3L-01633.MethArray.Green.T C3L-01633 UCEC Methylation Array tumor CPT0091910009 C3L-01633.MethArray.Red.T C3L-01633 UCEC Methylation Array tumor CPT0091910009 202234380062_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 b40d3abd-0bd1-45a5-a6a9-292f5163df77 97fc9c06c17f4922e14af23d4ca14408 { 'aliquot_tag': 'ALQ_c24c8f8e', 'gdc_sample_type': 'Primary Tumor' } C3L-01633.miRNA-Seq.T C3L-01633 UCEC miRNA-Seq tumor CPT0091910006 180828_UNC32-K00270_0112_AHWTLNBBXX_AGTCAA_S5_L006_R1_001.unaln.bam 240468549 BAM unaligned CPTAC3 374eb2c1-9edb-4afb-9c6f-78add2b0319e 449f507f10b8243d2f615493bb27d1ec { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor' } C3L-01633.miRNA-Seq.T.hg38 C3L-01633 UCEC miRNA-Seq tumor CPT0091910006 bb3b5934-335c-47e6-8c79-fba826085b93_mirnaseq_gdc_realn.bam 267277597 BAM harmonized CPTAC3 6bde9c8f-6e4d-4f03-9359-9b8876c52598 bef4633116c2e92c240bd78fd04ad6e0 { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01633.RNA-Seq.chimeric.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 e4cb7870-db24-44fa-a060-0a74a6d77a65.rna_seq.chimeric.gdc_realn.bam 37679774 BAM chimeric harmonized CPTAC3 4ba20d07-d5d4-4eb1-8fd1-16c84a669d90 dd1e4ab75bd0bb1700f34a28cec6051e { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01633.RNA-Seq.genomic.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 e4cb7870-db24-44fa-a060-0a74a6d77a65.rna_seq.genomic.gdc_realn.bam 9504166786 BAM genomic harmonized CPTAC3 0df84f9a-8c5f-4502-afe3-dd7db71c3ccf 11acf33eb035626194798988d3d0787a { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01633.RNA-Seq.R1_L007.T C3L-01633 UCEC RNA-Seq tumor CPT0091910006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L007_R1_001.fastq.gz 4452423395 FASTQ R1_L007 unaligned CPTAC3 ff305587-2591-40e3-83a9-fdd4cb6f7d0b c5ed0ba4d3e15378e2cb3a90ecc2dd83 { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01633.RNA-Seq.R1_.T C3L-01633 UCEC RNA-Seq tumor CPT0349970001 20210729_P3_H10_WB7988-Plate3_S94_R1_001.fastq.gz 6096845634 FASTQ R1_ unaligned CPTAC3 ffe93cac-8d42-4933-81ce-05d1f33a19e9 59afd75fb1ce83c4bb9c6fa2f46b6f0d { 'aliquot_tag': 'ALQ_d2b0956f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01633.RNA-Seq.R2_L007.T C3L-01633 UCEC RNA-Seq tumor CPT0091910006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L007_R2_001.fastq.gz 4766776796 FASTQ R2_L007 unaligned CPTAC3 9624b90f-a7c0-4a46-9317-a2a0cf016fe8 d00760341add419284aac35fe6bcd50b { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01633.RNA-Seq.R2_.T C3L-01633 UCEC RNA-Seq tumor CPT0349970001 20210729_P3_H10_WB7988-Plate3_S94_R2_001.fastq.gz 6348850234 FASTQ R2_ unaligned CPTAC3 8458ced5-99a4-4695-b82f-ab063ba599c8 2f4090fa76a735a89c3dc33cae5fe0da { 'aliquot_tag': 'ALQ_d2b0956f', 'gdc_sample_type': 'Primary Tumor' } -C3L-01633.RNA-Seq.transcriptome.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 e4cb7870-db24-44fa-a060-0a74a6d77a65.rna_seq.transcriptome.gdc_realn.bam 9166617998 BAM transcriptome harmonized CPTAC3 21c01025-7f26-4441-8e72-3cc1615ff153 c5833ac8e397a000db6e22324589ff59 { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01633.RNA-Seq.chimeric.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 04927de5-bd59-41c1-b17c-c5e634c28280.rna_seq.chimeric.gdc_realn.bam 37655641 BAM chimeric harmonized CPTAC3 f7a18eec-8087-4d66-9340-f09b9723546e 78bd65e2534b2353543bbfe7a5cb5767 { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01633.RNA-Seq.chimeric.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0349970001 80978d6b-7b1b-481b-9fa4-ff1ade7d80b9.rna_seq.chimeric.gdc_realn.bam 181743091 BAM chimeric harmonized CPTAC3 ca395e24-91f5-45d7-bb5d-7ced649b0b71 b412ed9312b779de2788b9742cd85289 { 'aliquot_tag': 'ALQ_d2b0956f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01633.RNA-Seq.genomic.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 04927de5-bd59-41c1-b17c-c5e634c28280.rna_seq.genomic.gdc_realn.bam 9504914517 BAM genomic harmonized CPTAC3 b5d8adf6-ef6a-40b1-a196-eaaa3c11d899 caf42b335f26ae526286b27833220f00 { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01633.RNA-Seq.genomic.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0349970001 80978d6b-7b1b-481b-9fa4-ff1ade7d80b9.rna_seq.genomic.gdc_realn.bam 9575192904 BAM genomic harmonized CPTAC3 5818adb7-1824-41eb-a95b-90e4415311c9 6e72ba76f17ac9d8bfc3be17b47587b1 { 'aliquot_tag': 'ALQ_d2b0956f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01633.RNA-Seq.R1_L007.T C3L-01633 UCEC RNA-Seq tumor CPT0091910006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L007_R1_001.fastq.gz 4452423395 FASTQ R1_L007 unaligned CPTAC3 ff305587-2591-40e3-83a9-fdd4cb6f7d0b c5ed0ba4d3e15378e2cb3a90ecc2dd83 { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01633.RNA-Seq.R2_L007.T C3L-01633 UCEC RNA-Seq tumor CPT0091910006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L007_R2_001.fastq.gz 4766776796 FASTQ R2_L007 unaligned CPTAC3 9624b90f-a7c0-4a46-9317-a2a0cf016fe8 d00760341add419284aac35fe6bcd50b { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-01633.RNA-Seq.T C3L-01633 UCEC RNA-Seq tumor CPT0349970001 20210729_P3_H10_WB7988-Plate3_S94_R1_001.fastq.gz 6096845634 FASTQ unaligned CPTAC3 ffe93cac-8d42-4933-81ce-05d1f33a19e9 59afd75fb1ce83c4bb9c6fa2f46b6f0d +C3L-01633.RNA-Seq.T C3L-01633 UCEC RNA-Seq tumor CPT0349970001 20210729_P3_H10_WB7988-Plate3_S94_R2_001.fastq.gz 6348850234 FASTQ unaligned CPTAC3 8458ced5-99a4-4695-b82f-ab063ba599c8 2f4090fa76a735a89c3dc33cae5fe0da +C3L-01633.RNA-Seq.transcriptome.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0091910006 04927de5-bd59-41c1-b17c-c5e634c28280.rna_seq.transcriptome.gdc_realn.bam 10465743240 BAM transcriptome harmonized CPTAC3 b26cb27a-e494-408e-a726-2886dc721618 1dbb3ce3a66a05a3ffdca5c857d7e61e { 'aliquot_tag': 'ALQ_52f3921f', 'gdc_sample_type': 'Primary Tumor' } +C3L-01633.RNA-Seq.transcriptome.T.hg38 C3L-01633 UCEC RNA-Seq tumor CPT0349970001 80978d6b-7b1b-481b-9fa4-ff1ade7d80b9.rna_seq.transcriptome.gdc_realn.bam 5011680619 BAM transcriptome harmonized CPTAC3 fe485078-a264-4a53-b094-cdd94fc404e0 9aa908f0fc6a7ebb5adf85aacbef3629 { 'aliquot_tag': 'ALQ_d2b0956f', 'gdc_sample_type': 'Primary Tumor' } C3L-01633.WGS.N C3L-01633 UCEC WGS blood_normal CPT0093690002 CPT0093690002.WholeGenome.RP-1303.bam 61130833842 BAM aligned CPTAC3 6c7812b2-1bb0-41c1-ae41-0668dc5cb7d7 ae89f70d4c240fdd0f80324e8bc44024 { 'aliquot_tag': 'ALQ_327be3b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01633.WGS.N.hg38 C3L-01633 UCEC WGS blood_normal CPT0093690002 642bdd21-0fca-4840-bc9d-17e7c8d1ae6c_wgs_gdc_realn.bam 88990464652 BAM harmonized CPTAC3 259d2e1b-0e58-4d98-b661-fb82f53fc01c 9ad70a37bbab501cb63eca9364f1dadd { 'aliquot_tag': 'ALQ_327be3b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01633.WGS.T C3L-01633 UCEC WGS tumor CPT0091910009 CPT0091910009.WholeGenome.RP-1303.bam 67725350566 BAM aligned CPTAC3 51b220e1-97ee-44e8-bac9-7de00d0bdb8c 55b9e37bb61272b7f2da669e443dc515 { 'aliquot_tag': 'ALQ_c24c8f8e', 'gdc_sample_type': 'Primary Tumor' } @@ -7645,12 +8293,12 @@ C3L-01637.miRNA-Seq.T C3L-01637 PDA miRNA-Seq tumor CPT0086190007 180724_UNC32-K C3L-01637.miRNA-Seq.T.hg38 C3L-01637 PDA miRNA-Seq tumor CPT0086190007 c3e06381-19cc-40d8-9d04-09863dd38aac_mirnaseq_gdc_realn.bam 316856389 BAM harmonized CPTAC3 f51c8113-8dc0-4b9e-983d-094063c6faaa ca57da6e487d3b739d3669d52040204f { 'aliquot_tag': 'ALQ_f0da5535', 'gdc_sample_type': 'Primary Tumor' } C3L-01637.RNA-Seq.chimeric.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 1d421a09-7f5e-4637-abba-3e71148e45ba.rna_seq.chimeric.gdc_realn.bam 128121013 BAM chimeric harmonized CPTAC3 55b6428e-de9b-4db3-8df5-6d85171abf71 8f47594d8e55902e554db4e04ae3e9ba { 'aliquot_tag': 'ALQ_a186415d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01637.RNA-Seq.chimeric.T.hg38 C3L-01637 PDA RNA-Seq tumor CPT0086190007 a86d2acb-7c35-4cad-906c-5cb64eeb542b.rna_seq.chimeric.gdc_realn.bam 31099964 BAM chimeric harmonized CPTAC3 c2044790-867b-4f46-bbf0-2f7a19238ddb 1dcb34920b7be27e04ac81a6fdb86e3c { 'aliquot_tag': 'ALQ_f0da5535', 'gdc_sample_type': 'Primary Tumor' } -C3L-01637.RNA-Seq.genomic.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 1d421a09-7f5e-4637-abba-3e71148e45ba.rna_seq.genomic.gdc_realn.bam 9875410016 BAM genomic harmonized CPTAC3 de245b32-8322-4dcc-9ddb-355b5223457f cefbdbde5e9002a57005d2c7ddc69be2 { 'aliquot_tag': 'ALQ_a186415d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01637.RNA-Seq.genomic.T.hg38 C3L-01637 PDA RNA-Seq tumor CPT0086190007 a86d2acb-7c35-4cad-906c-5cb64eeb542b.rna_seq.genomic.gdc_realn.bam 8927040724 BAM genomic harmonized CPTAC3 ebbfdceb-8612-47e9-8a0b-9207be9aed9b 6d0a8ada6ac1acb0a81309b9a460c6bd { 'aliquot_tag': 'ALQ_f0da5535', 'gdc_sample_type': 'Primary Tumor' } -C3L-01637.RNA-Seq.R1_L003.T C3L-01637 PDA RNA-Seq tumor CPT0086190007 171116_UNC31-K00269_0093_BHMFKJBBXX_GGCTAC_S10_L003_R1_001.fastq.gz 4127858067 FASTQ R1_L003 unaligned CPTAC3 e29fc9d5-e08c-44d7-9612-a6309a767e50 130f6f8abf5e4adac98b0f8539ff56e4 { 'aliquot_tag': 'ALQ_f0da5535', 'gdc_sample_type': 'Primary Tumor' } -C3L-01637.RNA-Seq.R1_L005.A C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 4055868945 FASTQ R1_L005 unaligned CPTAC3 e6168402-60ed-4ae8-8b31-78c510877930 ac0eb072deaadaf2370aad9e6e460696 { 'aliquot_tag': 'ALQ_a186415d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01637.RNA-Seq.R2_L003.T C3L-01637 PDA RNA-Seq tumor CPT0086190007 171116_UNC31-K00269_0093_BHMFKJBBXX_GGCTAC_S10_L003_R2_001.fastq.gz 4754292520 FASTQ R2_L003 unaligned CPTAC3 84cb105d-3e3d-42e5-a250-bb4aa20ce824 6412966593342f89fa54dc6c84ad04e2 { 'aliquot_tag': 'ALQ_f0da5535', 'gdc_sample_type': 'Primary Tumor' } -C3L-01637.RNA-Seq.R2_L005.A C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 4460444987 FASTQ R2_L005 unaligned CPTAC3 8047c467-d41a-4ecb-9698-1dd8007aa4a8 096e52b84b8e1dcb0470365352ed6854 { 'aliquot_tag': 'ALQ_a186415d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01637.RNA-Seq.genomic.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 1d421a09-7f5e-4637-abba-3e71148e45ba.rna_seq.genomic.gdc_realn.bam 9875410016 BAM genomic harmonized CPTAC3 8db0a3bd-7aa8-4aea-9fb8-eece18479eae cefbdbde5e9002a57005d2c7ddc69be2 { 'aliquot_tag': 'ALQ_a186415d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01637.RNA-Seq.genomic.T.hg38 C3L-01637 PDA RNA-Seq tumor CPT0086190007 a86d2acb-7c35-4cad-906c-5cb64eeb542b.rna_seq.genomic.gdc_realn.bam 8927040724 BAM genomic harmonized CPTAC3 2cc7fd2c-3a8e-4167-a5df-773a7d386f16 6d0a8ada6ac1acb0a81309b9a460c6bd { 'aliquot_tag': 'ALQ_f0da5535', 'gdc_sample_type': 'Primary Tumor' } +C3L-01637.RNA-Seq.R1_L003.T C3L-01637 PDA RNA-Seq tumor CPT0086190007 171116_UNC31-K00269_0093_BHMFKJBBXX_GGCTAC_S10_L003_R1_001.fastq.gz 4127858067 FASTQ R1_L003 unaligned CPTAC3 e29fc9d5-e08c-44d7-9612-a6309a767e50 130f6f8abf5e4adac98b0f8539ff56e4 { 'aliquot_tag': 'ALQ_f0da5535', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01637.RNA-Seq.R1_L005.A C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 4055868945 FASTQ R1_L005 unaligned CPTAC3 e6168402-60ed-4ae8-8b31-78c510877930 ac0eb072deaadaf2370aad9e6e460696 { 'aliquot_tag': 'ALQ_a186415d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-01637.RNA-Seq.R2_L003.T C3L-01637 PDA RNA-Seq tumor CPT0086190007 171116_UNC31-K00269_0093_BHMFKJBBXX_GGCTAC_S10_L003_R2_001.fastq.gz 4754292520 FASTQ R2_L003 unaligned CPTAC3 84cb105d-3e3d-42e5-a250-bb4aa20ce824 6412966593342f89fa54dc6c84ad04e2 { 'aliquot_tag': 'ALQ_f0da5535', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01637.RNA-Seq.R2_L005.A C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 4460444987 FASTQ R2_L005 unaligned CPTAC3 8047c467-d41a-4ecb-9698-1dd8007aa4a8 096e52b84b8e1dcb0470365352ed6854 { 'aliquot_tag': 'ALQ_a186415d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-01637.RNA-Seq.transcriptome.A.hg38 C3L-01637 PDA RNA-Seq tissue_normal CPT0086210009 1d421a09-7f5e-4637-abba-3e71148e45ba.rna_seq.transcriptome.gdc_realn.bam 10231142589 BAM transcriptome harmonized CPTAC3 636177a1-8569-4086-b582-4facf6af065e be4871b9f577e35dc71ba18ffa173885 { 'aliquot_tag': 'ALQ_a186415d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01637.RNA-Seq.transcriptome.T.hg38 C3L-01637 PDA RNA-Seq tumor CPT0086190007 a86d2acb-7c35-4cad-906c-5cb64eeb542b.rna_seq.transcriptome.gdc_realn.bam 13741567201 BAM transcriptome harmonized CPTAC3 85797a6c-9d70-4d55-8e57-0be3b2ad8d78 e8840be71eb72fdfb1908d9d0f188bfd { 'aliquot_tag': 'ALQ_f0da5535', 'gdc_sample_type': 'Primary Tumor' } C3L-01637.Targeted.T C3L-01637 PDA Targeted Sequencing tumor CPT0086190010_1 CPT0086190010_1.CustomSelection.RP-1303.PDO-18786.bam 6846991472 BAM aligned CPTAC3 c0dff626-aa16-4e58-b243-52617cedb920 5634e7ca7f4427e543b897dd0e89326a { 'aliquot_tag': 'ALQ_29e7b5a9', 'gdc_sample_type': 'Primary Tumor' } @@ -7671,18 +8319,21 @@ C3L-01639.miRNA-Seq.A C3L-01639 UCEC miRNA-Seq tissue_normal CPT0091790009 18111 C3L-01639.miRNA-Seq.A.hg38 C3L-01639 UCEC miRNA-Seq tissue_normal CPT0091790009 d1969a4c-7011-49d4-9d90-33986d5f5934_mirnaseq_gdc_realn.bam 301663258 BAM harmonized CPTAC3 5b7b6e7c-3e0c-4157-a152-a6b31f71d107 d24da330e53e0089783f95ef505f9119 { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01639.miRNA-Seq.T C3L-01639 UCEC miRNA-Seq tumor CPT0091780006 180828_UNC32-K00270_0112_AHWTLNBBXX_TAGCTT_S2_L006_R1_001.unaln.bam 256432667 BAM unaligned CPTAC3 b28c5abf-4076-4071-b444-e3771b21ed2a 52b7c625b1d96788eda84ca5a90a71ba { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor' } C3L-01639.miRNA-Seq.T.hg38 C3L-01639 UCEC miRNA-Seq tumor CPT0091780006 8564e10c-07b6-4a18-ba76-91445ed9d078_mirnaseq_gdc_realn.bam 282493696 BAM harmonized CPTAC3 5ce5a181-8386-4268-99af-b6f7af82999b cd38cf7bd1da4ef9fe6dde187090b93e { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01639.RNA-Seq.chimeric.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 bcee920f-4558-4a82-a014-11c4e1210022.rna_seq.chimeric.gdc_realn.bam 37917652 BAM chimeric harmonized CPTAC3 69d77f05-8635-48c6-86e3-53432f715093 189b8586fcabfc84d012c254d35d6fd0 { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01639.RNA-Seq.chimeric.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 8a7fb399-bf36-4d6d-ad56-5639d12f557f.rna_seq.chimeric.gdc_realn.bam 41182435 BAM chimeric harmonized CPTAC3 2c013b3a-8bc7-4b00-9628-deccb028d73e cb2bbc01ca015d2206f4510f30ebcfee { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01639.RNA-Seq.genomic.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 bcee920f-4558-4a82-a014-11c4e1210022.rna_seq.genomic.gdc_realn.bam 9802998922 BAM genomic harmonized CPTAC3 8e65f219-220f-4229-a664-64867876d826 845cf904259c415b396afa9633f0b25d { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01639.RNA-Seq.genomic.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 8a7fb399-bf36-4d6d-ad56-5639d12f557f.rna_seq.genomic.gdc_realn.bam 10608394622 BAM genomic harmonized CPTAC3 8e010586-4111-41f9-9d37-eed59a098273 cd95b90863dd0de97d111ec28da0fff4 { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01639.RNA-Seq.R1_L004.A C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 180606_UNC32-K00270_0097_AHVCKFBBXX_GAGTGG_S13_L004_R1_001.fastq.gz 4219194039 FASTQ R1_L004 unaligned CPTAC3 464f159b-5e28-455d-ad4c-e804d7891f38 915b5894e76d198e87707aeef5891151 { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01639.RNA-Seq.R1_L008.T C3L-01639 UCEC RNA-Seq tumor CPT0091780006 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L008_R1_001.fastq.gz 4893948768 FASTQ R1_L008 unaligned CPTAC3 816781bb-3b5f-46a9-9f46-c39afa6ff2e5 5e230b1960121e7212685d6177ecc616 { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01639.RNA-Seq.R1_.T C3L-01639 UCEC RNA-Seq tumor CPT0349990001 20210729_P3_H1_WB7988-Plate3_S85_R1_001.fastq.gz 6969742686 FASTQ R1_ unaligned CPTAC3 ae0bf109-1bd2-49b1-a4e0-190613a29dbb bd4fe80a32bb3df130f203d395756149 { 'aliquot_tag': 'ALQ_6d802b0e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01639.RNA-Seq.R2_L004.A C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 180606_UNC32-K00270_0097_AHVCKFBBXX_GAGTGG_S13_L004_R2_001.fastq.gz 4617092075 FASTQ R2_L004 unaligned CPTAC3 beb2f356-caaf-41d2-8bdb-3b7a63094247 39aeef49003dfde9dff244d6ae5de009 { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01639.RNA-Seq.R2_L008.T C3L-01639 UCEC RNA-Seq tumor CPT0091780006 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L008_R2_001.fastq.gz 5349775554 FASTQ R2_L008 unaligned CPTAC3 8d511897-c67c-4325-b924-c90d6d6b38d3 f30bfad0b41a56e4caa776685ecf0d1f { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01639.RNA-Seq.R2_.T C3L-01639 UCEC RNA-Seq tumor CPT0349990001 20210729_P3_H1_WB7988-Plate3_S85_R2_001.fastq.gz 7296880555 FASTQ R2_ unaligned CPTAC3 8b6b17e4-cffd-48ed-9db2-751bfdb8b22a af7be891a534056c0ca21f1bf5ab77a8 { 'aliquot_tag': 'ALQ_6d802b0e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01639.RNA-Seq.transcriptome.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 bcee920f-4558-4a82-a014-11c4e1210022.rna_seq.transcriptome.gdc_realn.bam 10307296078 BAM transcriptome harmonized CPTAC3 14e8223c-efe8-4a72-8048-dfc4fd499947 f6c7ba0933fe961064e0795dd459e978 { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01639.RNA-Seq.transcriptome.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 8a7fb399-bf36-4d6d-ad56-5639d12f557f.rna_seq.transcriptome.gdc_realn.bam 11673414848 BAM transcriptome harmonized CPTAC3 3d8a1273-5d4d-48cb-ab70-cc879f4d1a11 480fd0992374cc3d059d262d9a6e460e { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01639.RNA-Seq.chimeric.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 65c233b8-7451-4bb1-85e3-c9122d3c1fdc.rna_seq.chimeric.gdc_realn.bam 37892782 BAM chimeric harmonized CPTAC3 3942208c-033f-430a-a291-655bb6ce9977 f8f4e06caf18d414a6fd069def59337e { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01639.RNA-Seq.chimeric.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 6a74a2fd-65c4-470a-b93d-6833bd813f43.rna_seq.chimeric.gdc_realn.bam 41166393 BAM chimeric harmonized CPTAC3 1b0601ea-3e49-48da-bf76-8c267388d21a 7122ff4ec669892393e03381510d1ce6 { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01639.RNA-Seq.chimeric.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0349990001 ca433325-a8b8-4139-a1ff-9000e64bb842.rna_seq.chimeric.gdc_realn.bam 265210569 BAM chimeric harmonized CPTAC3 1a345f59-45c0-4ae7-a61c-b75ab7cab282 4fdcb8749b802da64679cec20fdc7c92 { 'aliquot_tag': 'ALQ_6d802b0e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01639.RNA-Seq.genomic.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 65c233b8-7451-4bb1-85e3-c9122d3c1fdc.rna_seq.genomic.gdc_realn.bam 9804456650 BAM genomic harmonized CPTAC3 e856f494-c144-4016-b657-2a9dba02fd01 e3823455665556dd532e02da6c9ec8ba { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01639.RNA-Seq.genomic.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 6a74a2fd-65c4-470a-b93d-6833bd813f43.rna_seq.genomic.gdc_realn.bam 10609031851 BAM genomic harmonized CPTAC3 db3fc1d7-6286-4cf3-9f3f-982cc185efe4 0d23f97acb6fdc575fe4bd58276e9f19 { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01639.RNA-Seq.genomic.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0349990001 ca433325-a8b8-4139-a1ff-9000e64bb842.rna_seq.genomic.gdc_realn.bam 11216178044 BAM genomic harmonized CPTAC3 cc771ecb-f4d3-4a70-ab3d-c91976ee4967 b2d3a3ded0781de29da28eb7c78fa36f { 'aliquot_tag': 'ALQ_6d802b0e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01639.RNA-Seq.R1_L004.A C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 180606_UNC32-K00270_0097_AHVCKFBBXX_GAGTGG_S13_L004_R1_001.fastq.gz 4219194039 FASTQ R1_L004 unaligned CPTAC3 464f159b-5e28-455d-ad4c-e804d7891f38 915b5894e76d198e87707aeef5891151 { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-01639.RNA-Seq.R1_L008.T C3L-01639 UCEC RNA-Seq tumor CPT0091780006 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L008_R1_001.fastq.gz 4893948768 FASTQ R1_L008 unaligned CPTAC3 816781bb-3b5f-46a9-9f46-c39afa6ff2e5 5e230b1960121e7212685d6177ecc616 { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01639.RNA-Seq.R2_L004.A C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 180606_UNC32-K00270_0097_AHVCKFBBXX_GAGTGG_S13_L004_R2_001.fastq.gz 4617092075 FASTQ R2_L004 unaligned CPTAC3 beb2f356-caaf-41d2-8bdb-3b7a63094247 39aeef49003dfde9dff244d6ae5de009 { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-01639.RNA-Seq.R2_L008.T C3L-01639 UCEC RNA-Seq tumor CPT0091780006 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L008_R2_001.fastq.gz 5349775554 FASTQ R2_L008 unaligned CPTAC3 8d511897-c67c-4325-b924-c90d6d6b38d3 f30bfad0b41a56e4caa776685ecf0d1f { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-01639.RNA-Seq.T C3L-01639 UCEC RNA-Seq tumor CPT0349990001 20210729_P3_H1_WB7988-Plate3_S85_R1_001.fastq.gz 6969742686 FASTQ unaligned CPTAC3 ae0bf109-1bd2-49b1-a4e0-190613a29dbb bd4fe80a32bb3df130f203d395756149 +C3L-01639.RNA-Seq.T C3L-01639 UCEC RNA-Seq tumor CPT0349990001 20210729_P3_H1_WB7988-Plate3_S85_R2_001.fastq.gz 7296880555 FASTQ unaligned CPTAC3 8b6b17e4-cffd-48ed-9db2-751bfdb8b22a af7be891a534056c0ca21f1bf5ab77a8 +C3L-01639.RNA-Seq.transcriptome.A.hg38 C3L-01639 UCEC RNA-Seq tissue_normal CPT0091790009 65c233b8-7451-4bb1-85e3-c9122d3c1fdc.rna_seq.transcriptome.gdc_realn.bam 11821399776 BAM transcriptome harmonized CPTAC3 22cde8be-57d4-4594-8434-db26bc40d5ff 02e457540023be95195459d93bd62b7d { 'aliquot_tag': 'ALQ_c836a53f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01639.RNA-Seq.transcriptome.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0091780006 6a74a2fd-65c4-470a-b93d-6833bd813f43.rna_seq.transcriptome.gdc_realn.bam 13379930032 BAM transcriptome harmonized CPTAC3 b82bb41a-6d7b-4d00-8ab2-f11c0a1e5f47 d0cf1488ae5a38ed155d87b9934ef3e5 { 'aliquot_tag': 'ALQ_65e9911e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01639.RNA-Seq.transcriptome.T.hg38 C3L-01639 UCEC RNA-Seq tumor CPT0349990001 ca433325-a8b8-4139-a1ff-9000e64bb842.rna_seq.transcriptome.gdc_realn.bam 6269449426 BAM transcriptome harmonized CPTAC3 04570948-2386-408d-86b3-66d9be1da42f 1add702d844d4c12038ac83f1e467328 { 'aliquot_tag': 'ALQ_6d802b0e', 'gdc_sample_type': 'Primary Tumor' } C3L-01639.WGS.A C3L-01639 UCEC WGS tissue_normal CPT0091790006 CPT0091790006.WholeGenome.RP-1303.bam 52934139541 BAM aligned CPTAC3 25e53d0a-437c-4c0c-9a8a-576453423932 401d8309cce17e665f0bbcb9e235b94f { 'aliquot_tag': 'ALQ_5889b8ae', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01639.WGS.A.hg38 C3L-01639 UCEC WGS tissue_normal CPT0091790006 1ab11a59-3815-4127-9b4c-4dc9f026aec9_wgs_gdc_realn.bam 78213779820 BAM harmonized CPTAC3 0a22bbdd-efb0-4918-84c3-ec98a5bafa9b 6c2b0928d6936072eb960ad8f15ed28b { 'aliquot_tag': 'ALQ_5889b8ae', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01639.WGS.N C3L-01639 UCEC WGS blood_normal CPT0093660002 CPT0093660002.WholeGenome.RP-1303.bam 67527712837 BAM aligned CPTAC3 7eaa3e77-d329-4721-842c-1c18597e24f5 615e92a02df31231eccd2d57f38bde11 { 'aliquot_tag': 'ALQ_817729ea', 'gdc_sample_type': 'Blood Derived Normal' } @@ -7701,8 +8352,8 @@ C3L-01662.miRNA-Seq.T C3L-01662 PDA miRNA-Seq tumor CPT0092630006 180724_UNC32-K C3L-01662.miRNA-Seq.T.hg38 C3L-01662 PDA miRNA-Seq tumor CPT0092630006 e7b35aee-bee6-4beb-98ff-70f9b107c7dd_mirnaseq_gdc_realn.bam 320023181 BAM harmonized CPTAC3 4b5f4348-a236-40b0-896e-46d76c9f3364 04e8d3543d60ebdb127c48e3d82b820d { 'aliquot_tag': 'ALQ_e88d6937', 'gdc_sample_type': 'Primary Tumor' } C3L-01662.RNA-Seq.chimeric.T.hg38 C3L-01662 PDA RNA-Seq tumor CPT0092630006 5cd00b35-2823-4ed6-bcd1-663ca6ed7395.rna_seq.chimeric.gdc_realn.bam 37008871 BAM chimeric harmonized CPTAC3 419f757d-c444-4c25-a2f1-b31cfb3f7a31 4f5f89f57ed35fc0b0173d78829e87f5 { 'aliquot_tag': 'ALQ_e88d6937', 'gdc_sample_type': 'Primary Tumor' } C3L-01662.RNA-Seq.genomic.T.hg38 C3L-01662 PDA RNA-Seq tumor CPT0092630006 5cd00b35-2823-4ed6-bcd1-663ca6ed7395.rna_seq.genomic.gdc_realn.bam 9832151069 BAM genomic harmonized CPTAC3 249e02ac-fd25-4f8c-a81a-66b738a5b9c3 9a584ea77456c86918637ca74bb0fea2 { 'aliquot_tag': 'ALQ_e88d6937', 'gdc_sample_type': 'Primary Tumor' } -C3L-01662.RNA-Seq.R1_L004.T C3L-01662 PDA RNA-Seq tumor CPT0092630006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 4293253378 FASTQ R1_L004 unaligned CPTAC3 b8342ecf-6779-436c-bcfa-55abd631e62e 124f285e0a9ee351c55c8f54beff952e { 'aliquot_tag': 'ALQ_e88d6937', 'gdc_sample_type': 'Primary Tumor' } -C3L-01662.RNA-Seq.R2_L004.T C3L-01662 PDA RNA-Seq tumor CPT0092630006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4707365099 FASTQ R2_L004 unaligned CPTAC3 a55017a7-697e-4dba-b4db-e3e7c6399e88 2ee26c40454fed188c98d6269884249a { 'aliquot_tag': 'ALQ_e88d6937', 'gdc_sample_type': 'Primary Tumor' } +C3L-01662.RNA-Seq.R1_L004.T C3L-01662 PDA RNA-Seq tumor CPT0092630006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 4293253378 FASTQ R1_L004 unaligned CPTAC3 b8342ecf-6779-436c-bcfa-55abd631e62e 124f285e0a9ee351c55c8f54beff952e { 'aliquot_tag': 'ALQ_e88d6937', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01662.RNA-Seq.R2_L004.T C3L-01662 PDA RNA-Seq tumor CPT0092630006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4707365099 FASTQ R2_L004 unaligned CPTAC3 a55017a7-697e-4dba-b4db-e3e7c6399e88 2ee26c40454fed188c98d6269884249a { 'aliquot_tag': 'ALQ_e88d6937', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01662.RNA-Seq.transcriptome.T.hg38 C3L-01662 PDA RNA-Seq tumor CPT0092630006 5cd00b35-2823-4ed6-bcd1-663ca6ed7395.rna_seq.transcriptome.gdc_realn.bam 12256923833 BAM transcriptome harmonized CPTAC3 00763025-7410-4dd4-b50b-6e3d8cbecb42 d65f35a4b4a0e90ec3fe996a69119e84 { 'aliquot_tag': 'ALQ_e88d6937', 'gdc_sample_type': 'Primary Tumor' } C3L-01662.Targeted.T C3L-01662 PDA Targeted Sequencing tumor CPT0092630009_1 CPT0092630009_1.CustomSelection.RP-1303.PDO-18786.bam 3495479155 BAM aligned CPTAC3 514194dd-d0d5-45fa-920d-ba2e810c9035 a2fceb03d18f47f46ebc23b08151398d { 'aliquot_tag': 'ALQ_82118526', 'gdc_sample_type': 'Primary Tumor' } C3L-01662.Targeted.T.hg38 C3L-01662 PDA Targeted Sequencing tumor CPT0092630009_1 2a4a409b-1e69-4ada-82ca-aa5fb68d80e2_targetedsequencing_gdc_realn.bam 4803356895 BAM harmonized CPTAC3 2cadca36-b201-438a-9ddf-742404cb856f fcdb91749718d0c145e81d3b99bbe331 { 'aliquot_tag': 'ALQ_82118526', 'gdc_sample_type': 'Primary Tumor' } @@ -7726,12 +8377,12 @@ C3L-01663.miRNA-Seq.T C3L-01663 LSCC miRNA-Seq tumor CPT0091610006 180828_UNC32- C3L-01663.miRNA-Seq.T.hg38 C3L-01663 LSCC miRNA-Seq tumor CPT0091610006 1edce407-e371-4a95-9f8b-7d3a95969381_mirnaseq_gdc_realn.bam 273527978 BAM harmonized CPTAC3 6ca2320b-c0dc-4a07-8179-0cfdae5a4f7a 5e33aef34ce4e8bdb3743f418baee079 { 'aliquot_tag': 'ALQ_a3a520ca', 'gdc_sample_type': 'Primary Tumor' } C3L-01663.RNA-Seq.chimeric.A.hg38 C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 c14f7414-8ec5-45f2-829a-04cf0167036b.rna_seq.chimeric.gdc_realn.bam 26527097 BAM chimeric harmonized CPTAC3 de2e4ee5-e3d2-4631-bc2a-34dde385d02e c0b95b99e9640a7de1d54fff8cd566f8 { 'aliquot_tag': 'ALQ_74ba478b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01663.RNA-Seq.chimeric.T.hg38 C3L-01663 LSCC RNA-Seq tumor CPT0091610006 c84e6387-d777-42e3-ba56-f6cc15f5c4a1.rna_seq.chimeric.gdc_realn.bam 34595374 BAM chimeric harmonized CPTAC3 ab709015-f458-454b-b089-64fe11f59ecd 2e1ffe422cbac7839318723526d4d60a { 'aliquot_tag': 'ALQ_a3a520ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-01663.RNA-Seq.genomic.A.hg38 C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 c14f7414-8ec5-45f2-829a-04cf0167036b.rna_seq.genomic.gdc_realn.bam 6839774564 BAM genomic harmonized CPTAC3 6b8fa539-ae79-4568-88ae-02bf3f680f73 311205b535d9acf66d7c8b6e8d32ba4b { 'aliquot_tag': 'ALQ_74ba478b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01663.RNA-Seq.genomic.T.hg38 C3L-01663 LSCC RNA-Seq tumor CPT0091610006 c84e6387-d777-42e3-ba56-f6cc15f5c4a1.rna_seq.genomic.gdc_realn.bam 9887406355 BAM genomic harmonized CPTAC3 40d381a5-5d08-4d8e-96e9-514ecbc5d0c7 ca16b6f5cdf1632e5ad72aeb87cd0c4b { 'aliquot_tag': 'ALQ_a3a520ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-01663.RNA-Seq.R1_L001.T C3L-01663 LSCC RNA-Seq tumor CPT0091610006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L001_R1_001.fastq.gz 4137297556 FASTQ R1_L001 unaligned CPTAC3 73ef597b-8bcb-4b29-8e1a-be4927a883ea 863344a5ae77fc7495f7ee9a21c590aa { 'aliquot_tag': 'ALQ_a3a520ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-01663.RNA-Seq.R1_L003.A C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3096565657 FASTQ R1_L003 unaligned CPTAC3 0c2f8c50-d1f7-452f-b323-5ec3d9e85455 374d200c8f44ec2f621c394c37a34f4b { 'aliquot_tag': 'ALQ_74ba478b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01663.RNA-Seq.R2_L001.T C3L-01663 LSCC RNA-Seq tumor CPT0091610006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L001_R2_001.fastq.gz 4728508029 FASTQ R2_L001 unaligned CPTAC3 9592a8a9-47d8-4648-a59a-dcf9b503f518 a5c2cce86e9489c28887beb28e16190d { 'aliquot_tag': 'ALQ_a3a520ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-01663.RNA-Seq.R2_L003.A C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3155433011 FASTQ R2_L003 unaligned CPTAC3 1f657838-9efc-4444-b1b3-8f0addcb0122 dd6b6af503eb40465a99ff67ffda7248 { 'aliquot_tag': 'ALQ_74ba478b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01663.RNA-Seq.genomic.A.hg38 C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 c14f7414-8ec5-45f2-829a-04cf0167036b.rna_seq.genomic.gdc_realn.bam 6839774564 BAM genomic harmonized CPTAC3 2776a5f6-132b-49a1-840b-88d6fa627183 311205b535d9acf66d7c8b6e8d32ba4b { 'aliquot_tag': 'ALQ_74ba478b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01663.RNA-Seq.genomic.T.hg38 C3L-01663 LSCC RNA-Seq tumor CPT0091610006 c84e6387-d777-42e3-ba56-f6cc15f5c4a1.rna_seq.genomic.gdc_realn.bam 9887406355 BAM genomic harmonized CPTAC3 ce880781-f3ec-4b45-b9f8-d4e41f1ae4f5 ca16b6f5cdf1632e5ad72aeb87cd0c4b { 'aliquot_tag': 'ALQ_a3a520ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-01663.RNA-Seq.R1_L001.T C3L-01663 LSCC RNA-Seq tumor CPT0091610006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L001_R1_001.fastq.gz 4137297556 FASTQ R1_L001 unaligned CPTAC3 73ef597b-8bcb-4b29-8e1a-be4927a883ea 863344a5ae77fc7495f7ee9a21c590aa { 'aliquot_tag': 'ALQ_a3a520ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01663.RNA-Seq.R1_L003.A C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3096565657 FASTQ R1_L003 unaligned CPTAC3 0c2f8c50-d1f7-452f-b323-5ec3d9e85455 374d200c8f44ec2f621c394c37a34f4b { 'aliquot_tag': 'ALQ_74ba478b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-01663.RNA-Seq.R2_L001.T C3L-01663 LSCC RNA-Seq tumor CPT0091610006 171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L001_R2_001.fastq.gz 4728508029 FASTQ R2_L001 unaligned CPTAC3 9592a8a9-47d8-4648-a59a-dcf9b503f518 a5c2cce86e9489c28887beb28e16190d { 'aliquot_tag': 'ALQ_a3a520ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01663.RNA-Seq.R2_L003.A C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 180516_UNC32-K00270_0095_AHTY5LBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3155433011 FASTQ R2_L003 unaligned CPTAC3 1f657838-9efc-4444-b1b3-8f0addcb0122 dd6b6af503eb40465a99ff67ffda7248 { 'aliquot_tag': 'ALQ_74ba478b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3L-01663.RNA-Seq.transcriptome.A.hg38 C3L-01663 LSCC RNA-Seq tissue_normal CPT0091620009 c14f7414-8ec5-45f2-829a-04cf0167036b.rna_seq.transcriptome.gdc_realn.bam 8512764587 BAM transcriptome harmonized CPTAC3 e5c738bc-a26c-4544-bc92-09a8f280f535 7b5c0ec073aab38c02527175cf2c8dee { 'aliquot_tag': 'ALQ_74ba478b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01663.RNA-Seq.transcriptome.T.hg38 C3L-01663 LSCC RNA-Seq tumor CPT0091610006 c84e6387-d777-42e3-ba56-f6cc15f5c4a1.rna_seq.transcriptome.gdc_realn.bam 10320070617 BAM transcriptome harmonized CPTAC3 240558c1-105c-4422-9517-473e9e3ec797 08a9e7b653c5e944f92aec745feeac40 { 'aliquot_tag': 'ALQ_a3a520ca', 'gdc_sample_type': 'Primary Tumor' } C3L-01663.WGS.A C3L-01663 LSCC WGS tissue_normal CPT0091620006 CPT0091620006.WholeGenome.RP-1303.bam 57205192238 BAM aligned CPTAC3 65b1cd43-76b8-4d0d-b2e1-3a3fb5d9e236 33008d233ac97006bcf72457a6bf2fbb { 'aliquot_tag': 'ALQ_e4055a1a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -7750,13 +8401,16 @@ C3L-01664.MethArray.Green.T C3L-01664 UCEC Methylation Array tumor CPT0086490009 C3L-01664.MethArray.Red.T C3L-01664 UCEC Methylation Array tumor CPT0086490009 202178770111_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 12606df3-3146-4fee-a50f-b24422b40f49 745b948e4dad3098915016d233823795 { 'aliquot_tag': 'ALQ_47afe981', 'gdc_sample_type': 'Primary Tumor' } C3L-01664.miRNA-Seq.T C3L-01664 UCEC miRNA-Seq tumor CPT0086490006 181012_UNC32-K00270_0124_AH223CBBXY_TCGGCA_S21_L006_R1_001.unaln.bam 197020247 BAM unaligned CPTAC3 2c7a4e07-ee3e-4fce-bece-9559c232930e 9d1d0e93ca8d25ba3f4573291708c747 { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor' } C3L-01664.miRNA-Seq.T.hg38 C3L-01664 UCEC miRNA-Seq tumor CPT0086490006 8b056760-06af-4dcd-8113-fc5b634f877e_mirnaseq_gdc_realn.bam 222222001 BAM harmonized CPTAC3 53b40765-b907-4fa3-8127-b36b13955efa 6d54ec84ace5accfe3426e13218063a7 { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor' } -C3L-01664.RNA-Seq.chimeric.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 beb71ed3-39a0-4987-831d-355e02a6aa57.rna_seq.chimeric.gdc_realn.bam 42310461 BAM chimeric harmonized CPTAC3 dfe431c1-e9f3-4272-9d99-c03397a1117d f6617b6948a56f1595d9359936c0b420 { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor' } -C3L-01664.RNA-Seq.genomic.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 beb71ed3-39a0-4987-831d-355e02a6aa57.rna_seq.genomic.gdc_realn.bam 9449955699 BAM genomic harmonized CPTAC3 5b577ff2-5ad5-45fc-8e98-dd4759eb1d75 017dcb1fc9c6084e07658b17df88c220 { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor' } -C3L-01664.RNA-Seq.R1_L003.T C3L-01664 UCEC RNA-Seq tumor CPT0086490006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGATGT_S11_L003_R1_001.fastq.gz 4664158765 FASTQ R1_L003 unaligned CPTAC3 55a1e215-8b97-4a2b-bda6-cf10ad5dd700 afb829fcf49f763429d92d75c2ff1f0e { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor' } -C3L-01664.RNA-Seq.R1_.T C3L-01664 UCEC RNA-Seq tumor CPT0350000001 20210729_P3_C11_WB7988-Plate3_S35_R1_001.fastq.gz 6081444164 FASTQ R1_ unaligned CPTAC3 e01e49a0-7a2d-4860-a623-34ff543494a7 6cab759ffa1b0aef16314d8aa3ef6ea3 { 'aliquot_tag': 'ALQ_1ead5dfa', 'gdc_sample_type': 'Primary Tumor' } -C3L-01664.RNA-Seq.R2_L003.T C3L-01664 UCEC RNA-Seq tumor CPT0086490006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGATGT_S11_L003_R2_001.fastq.gz 5016265899 FASTQ R2_L003 unaligned CPTAC3 a76c2357-4795-47e4-846d-432085fadd08 47c43542e1359583c1f4a55bed10cabb { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor' } -C3L-01664.RNA-Seq.R2_.T C3L-01664 UCEC RNA-Seq tumor CPT0350000001 20210729_P3_C11_WB7988-Plate3_S35_R2_001.fastq.gz 6328288764 FASTQ R2_ unaligned CPTAC3 5323af2a-134a-455d-ac16-929b33788c9a b45a888a6aa123979a7e1274658ed60d { 'aliquot_tag': 'ALQ_1ead5dfa', 'gdc_sample_type': 'Primary Tumor' } -C3L-01664.RNA-Seq.transcriptome.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 beb71ed3-39a0-4987-831d-355e02a6aa57.rna_seq.transcriptome.gdc_realn.bam 10950808919 BAM transcriptome harmonized CPTAC3 ec85cef8-8e3a-4d18-82a7-4367e2bcafe8 1678e9dafc00cdb8d0510967066a0fd3 { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor' } +C3L-01664.RNA-Seq.chimeric.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 ab7185f2-b628-494f-8908-666b49aacfe0.rna_seq.chimeric.gdc_realn.bam 42293514 BAM chimeric harmonized CPTAC3 8904a35e-e49c-4162-a2ef-c24b4b745cd7 04207dab627dbc27a74dce0e26ce4184 { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor' } +C3L-01664.RNA-Seq.chimeric.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0350000001 ea0f09be-3d93-4980-b6fd-57c3f7fb6c29.rna_seq.chimeric.gdc_realn.bam 208877927 BAM chimeric harmonized CPTAC3 8ca4effc-5c3d-43b9-b5e1-6611949220a1 2f51305cafea66187c329f82509f58ba { 'aliquot_tag': 'ALQ_1ead5dfa', 'gdc_sample_type': 'Primary Tumor' } +C3L-01664.RNA-Seq.genomic.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 ab7185f2-b628-494f-8908-666b49aacfe0.rna_seq.genomic.gdc_realn.bam 9451445756 BAM genomic harmonized CPTAC3 e056ea08-71ff-4135-b77b-df5dfa1c132a 34089186b168de167e5631f89d5dad64 { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor' } +C3L-01664.RNA-Seq.genomic.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0350000001 ea0f09be-3d93-4980-b6fd-57c3f7fb6c29.rna_seq.genomic.gdc_realn.bam 10170037976 BAM genomic harmonized CPTAC3 78c08458-d1f7-48a8-bae4-482f7d518195 435e93a568b00d8ec4255e4ada812612 { 'aliquot_tag': 'ALQ_1ead5dfa', 'gdc_sample_type': 'Primary Tumor' } +C3L-01664.RNA-Seq.R1_L003.T C3L-01664 UCEC RNA-Seq tumor CPT0086490006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGATGT_S11_L003_R1_001.fastq.gz 4664158765 FASTQ R1_L003 unaligned CPTAC3 55a1e215-8b97-4a2b-bda6-cf10ad5dd700 afb829fcf49f763429d92d75c2ff1f0e { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01664.RNA-Seq.R2_L003.T C3L-01664 UCEC RNA-Seq tumor CPT0086490006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGATGT_S11_L003_R2_001.fastq.gz 5016265899 FASTQ R2_L003 unaligned CPTAC3 a76c2357-4795-47e4-846d-432085fadd08 47c43542e1359583c1f4a55bed10cabb { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01664.RNA-Seq.T C3L-01664 UCEC RNA-Seq tumor CPT0350000001 20210729_P3_C11_WB7988-Plate3_S35_R1_001.fastq.gz 6081444164 FASTQ unaligned CPTAC3 e01e49a0-7a2d-4860-a623-34ff543494a7 6cab759ffa1b0aef16314d8aa3ef6ea3 +C3L-01664.RNA-Seq.T C3L-01664 UCEC RNA-Seq tumor CPT0350000001 20210729_P3_C11_WB7988-Plate3_S35_R2_001.fastq.gz 6328288764 FASTQ unaligned CPTAC3 5323af2a-134a-455d-ac16-929b33788c9a b45a888a6aa123979a7e1274658ed60d +C3L-01664.RNA-Seq.transcriptome.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0086490006 ab7185f2-b628-494f-8908-666b49aacfe0.rna_seq.transcriptome.gdc_realn.bam 12441898934 BAM transcriptome harmonized CPTAC3 ad555ea6-6f1e-42bb-96f0-29796d23ae23 5d27ea279167b74c408021972090756c { 'aliquot_tag': 'ALQ_d710f410', 'gdc_sample_type': 'Primary Tumor' } +C3L-01664.RNA-Seq.transcriptome.T.hg38 C3L-01664 UCEC RNA-Seq tumor CPT0350000001 ea0f09be-3d93-4980-b6fd-57c3f7fb6c29.rna_seq.transcriptome.gdc_realn.bam 5000160717 BAM transcriptome harmonized CPTAC3 43346e71-c94e-4dad-a8ac-50ead9592ab1 9669f1e854b025fa68974b2457473f1f { 'aliquot_tag': 'ALQ_1ead5dfa', 'gdc_sample_type': 'Primary Tumor' } C3L-01664.WGS.N C3L-01664 UCEC WGS blood_normal CPT0087420002 CPT0087420002.WholeGenome.RP-1303.bam 66771549643 BAM aligned CPTAC3 8750d8e9-0f1e-4a8c-9d94-fce59c248e33 ed973243b791b60a5476b02a6bee761c { 'aliquot_tag': 'ALQ_1da0aac', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01664.WGS.N.hg38 C3L-01664 UCEC WGS blood_normal CPT0087420002 d500ddc5-7e3c-4e3b-89a1-ac32ae7d24a5_gdc_realn.bam 100355349082 BAM harmonized CPTAC3 a1dcd820-778b-4d02-92ef-68dd5ba837b5 084a2679ad734620db58eb2b2f761d2e { 'aliquot_tag': 'ALQ_1da0aac', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01664.WGS.T C3L-01664 UCEC WGS tumor CPT0086490009 CPT0086490009.WholeGenome.RP-1303.bam 74574387437 BAM aligned CPTAC3 3cde246e-6bfc-4997-be3e-f9631fe34483 0f99618f38fb4284e3b30b8a0f2deb65 { 'aliquot_tag': 'ALQ_47afe981', 'gdc_sample_type': 'Primary Tumor' } @@ -7773,16 +8427,16 @@ C3L-01665.miRNA-Seq.A C3L-01665 CCRCC miRNA-Seq tissue_normal CPT0104510009 1811 C3L-01665.miRNA-Seq.A.hg38 C3L-01665 CCRCC miRNA-Seq tissue_normal CPT0104510009 25037772-4350-4114-a3f0-6c2f7d201ed9_mirnaseq_gdc_realn.bam 251945683 BAM harmonized CPTAC3 410d2c5c-9c1a-40d7-b5d2-f7109eb80655 39e568b8f7e2ad24e2a75fded0404779 { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01665.miRNA-Seq.T C3L-01665 CCRCC miRNA-Seq tumor CPT0104500006 181108_UNC31-K00269_0163_BH23TVBBXY_CGGAAT_S37_L007_R1_001.unaln.bam 239318696 BAM unaligned CPTAC3 5b1d5c50-312a-465e-a5d0-4a0951f0515d b55d5cefed67db3c25bcff9a0a8630f6 { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor' } C3L-01665.miRNA-Seq.T.hg38 C3L-01665 CCRCC miRNA-Seq tumor CPT0104500006 eee234ed-d72e-4b0e-bfce-5e6b0e45443f_mirnaseq_gdc_realn.bam 268004909 BAM harmonized CPTAC3 27fc5186-7de1-4475-906e-031f1f0e406b 3929894cd1b6c8c35594483a831a5d51 { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01665.RNA-Seq.chimeric.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 f821bfab-317d-4018-ab32-e53e53b325a8.rna_seq.chimeric.gdc_realn.bam 33638263 BAM chimeric harmonized CPTAC3 f2e96b6f-e5ac-4886-a3f6-b10afe26b48c e1f9dc7d03f094e0536e123226784407 { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01665.RNA-Seq.chimeric.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 d0046de3-91b8-4ee8-b9b0-9f1e9c1233c6.rna_seq.chimeric.gdc_realn.bam 34000414 BAM chimeric harmonized CPTAC3 c847a5f3-0284-445e-889d-af94ed885f48 0cdba503b2472d5a290e23d705c35d6d { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01665.RNA-Seq.genomic.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 f821bfab-317d-4018-ab32-e53e53b325a8.rna_seq.genomic.gdc_realn.bam 9973450467 BAM genomic harmonized CPTAC3 a4b5831c-e4b3-44cd-84b7-dd74b9f3b48d cc3deae737e55bab745c73e19b92a0a6 { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01665.RNA-Seq.genomic.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 d0046de3-91b8-4ee8-b9b0-9f1e9c1233c6.rna_seq.genomic.gdc_realn.bam 7859906477 BAM genomic harmonized CPTAC3 c6fb5ff3-fdc4-4776-8246-a62f3c733b6d 1458e962eea6d27e09e3ecc080acf13c { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01665.RNA-Seq.R1_L007.T C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3552229163 FASTQ R1_L007 unaligned CPTAC3 979f0067-3aaa-4ce5-82be-18c59b92d745 20fef6485dfa03166c23467d8681f872 { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01665.RNA-Seq.R1_L008.A C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 180516_UNC31-K00269_0130_BHV22JBBXX_ATGTCA_S8_L008_R1_001.fastq.gz 4406130660 FASTQ R1_L008 unaligned CPTAC3 d2e0e613-b766-4a33-afd9-9b711e97ba5e 87e27cb24c698f77ec3621d1da97537f { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01665.RNA-Seq.R2_L007.T C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 3910020008 FASTQ R2_L007 unaligned CPTAC3 59769f43-2edb-4653-a37e-326fb6ebf5f4 017b62b2c5ea53ccc6801385a8fd8194 { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01665.RNA-Seq.R2_L008.A C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 180516_UNC31-K00269_0130_BHV22JBBXX_ATGTCA_S8_L008_R2_001.fastq.gz 4842367319 FASTQ R2_L008 unaligned CPTAC3 0f866237-d0e1-4239-b0af-ffe14fa9c06c e004cabccf30ee1e6982966870d89fb8 { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01665.RNA-Seq.transcriptome.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 f821bfab-317d-4018-ab32-e53e53b325a8.rna_seq.transcriptome.gdc_realn.bam 9469472437 BAM transcriptome harmonized CPTAC3 afbf19dc-89da-4ab9-9b6b-e271fb444bc1 7b777fff724edce35a9bf82720302564 { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01665.RNA-Seq.transcriptome.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 d0046de3-91b8-4ee8-b9b0-9f1e9c1233c6.rna_seq.transcriptome.gdc_realn.bam 8869047633 BAM transcriptome harmonized CPTAC3 c7ba033e-0a4c-4b45-beb4-ae968d0d90b6 7e78301e0749e97d8911de927d951e67 { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01665.RNA-Seq.chimeric.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 66240dc7-f532-448d-91f8-a67168cdf457.rna_seq.chimeric.gdc_realn.bam 33623886 BAM chimeric harmonized CPTAC3 5d095f41-f963-4a99-a095-cd0225165b5b 5b5c8006074d75e47f22a71da957a9d4 { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01665.RNA-Seq.chimeric.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 acc85e4c-c313-4e7c-a209-f75ca4e7cc7a.rna_seq.chimeric.gdc_realn.bam 33973531 BAM chimeric harmonized CPTAC3 715a8b31-2ab4-4cec-b05c-d63d7fe6eceb 701c8e8777bf763b908db8e0fb58729b { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01665.RNA-Seq.genomic.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 66240dc7-f532-448d-91f8-a67168cdf457.rna_seq.genomic.gdc_realn.bam 9974667232 BAM genomic harmonized CPTAC3 01c21cba-a9af-46d1-a80f-0795be983fb1 ba2ac44736e5b8e29d1c913f5378ca47 { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01665.RNA-Seq.genomic.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 acc85e4c-c313-4e7c-a209-f75ca4e7cc7a.rna_seq.genomic.gdc_realn.bam 7860687362 BAM genomic harmonized CPTAC3 53a53704-7666-4a21-a7a2-b403ed4024b5 2be2bdd2a2eee3b685800ce72405d41c { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01665.RNA-Seq.R1_L007.T C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3552229163 FASTQ R1_L007 unaligned CPTAC3 979f0067-3aaa-4ce5-82be-18c59b92d745 20fef6485dfa03166c23467d8681f872 { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01665.RNA-Seq.R1_L008.A C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 180516_UNC31-K00269_0130_BHV22JBBXX_ATGTCA_S8_L008_R1_001.fastq.gz 4406130660 FASTQ R1_L008 unaligned CPTAC3 d2e0e613-b766-4a33-afd9-9b711e97ba5e 87e27cb24c698f77ec3621d1da97537f { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-01665.RNA-Seq.R2_L007.T C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 3910020008 FASTQ R2_L007 unaligned CPTAC3 59769f43-2edb-4653-a37e-326fb6ebf5f4 017b62b2c5ea53ccc6801385a8fd8194 { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-01665.RNA-Seq.R2_L008.A C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 180516_UNC31-K00269_0130_BHV22JBBXX_ATGTCA_S8_L008_R2_001.fastq.gz 4842367319 FASTQ R2_L008 unaligned CPTAC3 0f866237-d0e1-4239-b0af-ffe14fa9c06c e004cabccf30ee1e6982966870d89fb8 { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-01665.RNA-Seq.transcriptome.A.hg38 C3L-01665 CCRCC RNA-Seq tissue_normal CPT0104510009 66240dc7-f532-448d-91f8-a67168cdf457.rna_seq.transcriptome.gdc_realn.bam 10824252346 BAM transcriptome harmonized CPTAC3 6cf98e30-a8da-4c7e-8ef1-74b52fc231f7 0834a7acd5a32add2688a6ed80bbb0bc { 'aliquot_tag': 'ALQ_ef826f3a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01665.RNA-Seq.transcriptome.T.hg38 C3L-01665 CCRCC RNA-Seq tumor CPT0104500006 acc85e4c-c313-4e7c-a209-f75ca4e7cc7a.rna_seq.transcriptome.gdc_realn.bam 10135166468 BAM transcriptome harmonized CPTAC3 124be1dc-170b-43fd-929b-e7e40dc23282 28dcb680371d04d92cb8371ed192fa65 { 'aliquot_tag': 'ALQ_425d5b1b', 'gdc_sample_type': 'Primary Tumor' } C3L-01665.WGS.A C3L-01665 CCRCC WGS tissue_normal CPT0104510006 CPT0104510006.WholeGenome.RP-1303.bam 59047137473 BAM aligned CPTAC3 ffd1877a-9571-41bd-b749-a8205538bc67 b1447e24274e097a134773c5240dd2d7 { 'aliquot_tag': 'ALQ_7f3d72ab', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01665.WGS.A.hg38 C3L-01665 CCRCC WGS tissue_normal CPT0104510006 c192eb5a-01f5-4795-a4dc-57cb22564607_wgs_gdc_realn.bam 86257749071 BAM harmonized CPTAC3 36f7e42f-807d-4005-afee-172278bb5369 57e63b2ffe896e43ef53bed95ba1844f { 'aliquot_tag': 'ALQ_7f3d72ab', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01665.WGS.N C3L-01665 CCRCC WGS blood_normal CPT0105140002 CPT0105140002.WholeGenome.RP-1303.bam 69057605719 BAM aligned CPTAC3 def0a483-8bd3-4ef2-a744-bf79aebdc898 055024d716e5a5ca5787723a7f71635c { 'aliquot_tag': 'ALQ_8d567060', 'gdc_sample_type': 'Blood Derived Normal' } @@ -7799,11 +8453,11 @@ C3L-01668.MethArray.Green.T C3L-01668 UCEC Methylation Array tumor CPT0186560011 C3L-01668.MethArray.Red.T C3L-01668 UCEC Methylation Array tumor CPT0186560011 203561450025_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 6ed44b55-cf51-4653-a85e-89f797f8c78e 285531f7cd5ec3985886aec25e230437 { 'aliquot_tag': 'ALQ_e1800c5', 'gdc_sample_type': 'Primary Tumor' } C3L-01668.miRNA-Seq.T C3L-01668 UCEC miRNA-Seq tumor CPT0186560014 190508_UNC31-K00269_0215_BH7FYKBBXY_CGATGT_S2_L001_R1_001.unaln.bam 250990473 BAM unaligned CPTAC3 e6381bfe-9317-445f-befb-7e2e5ec57e38 08e0142a2cacf92fd2c887f53cfaa917 { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor' } C3L-01668.miRNA-Seq.T.hg38 C3L-01668 UCEC miRNA-Seq tumor CPT0186560014 0b06ee24-8939-49a3-bbc2-cb464fe9bd96_mirnaseq_gdc_realn.bam 277832460 BAM harmonized CPTAC3 2b4af245-9385-4ae8-ae41-7f4cb28ed119 983e5c23457aba0e8e8d2800b6f563fb { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01668.RNA-Seq.chimeric.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 b55268b3-4414-488c-a9da-e975cb6bd0ce.rna_seq.chimeric.gdc_realn.bam 36984715 BAM chimeric harmonized CPTAC3 a3a86619-f4d0-49a3-b970-d840df57442e dc0e7119668ecfc32ded381816cef37e { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01668.RNA-Seq.genomic.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 b55268b3-4414-488c-a9da-e975cb6bd0ce.rna_seq.genomic.gdc_realn.bam 9137436138 BAM genomic harmonized CPTAC3 cc74d50b-a198-498f-b21c-b013ab44aaca 40db79b68f7e1f56f9c4ce7e980de40d { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01668.RNA-Seq.R1_L004.T C3L-01668 UCEC RNA-Seq tumor CPT0186560014 190426_UNC32-K00270_0167_AH7CK7BBXY_TTATAACC-GATATCGA_S12_L004_R1_001.fastq.gz 4529984647 FASTQ R1_L004 unaligned CPTAC3 625ba623-69d4-478f-b201-9c67d3b25697 9c188eaed1b09d15824a51330af22db7 { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01668.RNA-Seq.R2_L004.T C3L-01668 UCEC RNA-Seq tumor CPT0186560014 190426_UNC32-K00270_0167_AH7CK7BBXY_TTATAACC-GATATCGA_S12_L004_R2_001.fastq.gz 4574905222 FASTQ R2_L004 unaligned CPTAC3 1a33f8a2-429e-4d65-b7a5-b02cff29c0c3 4d30b7df5f062cdc692ad321b137f69f { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01668.RNA-Seq.transcriptome.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 b55268b3-4414-488c-a9da-e975cb6bd0ce.rna_seq.transcriptome.gdc_realn.bam 8524158524 BAM transcriptome harmonized CPTAC3 94ed86af-9f07-41a5-8a08-c9b25d864021 968842720fda5d77358f747248ed0895 { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01668.RNA-Seq.chimeric.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 36ffdb3d-b3e7-45a7-bfe6-424bd8a85606.rna_seq.chimeric.gdc_realn.bam 36969658 BAM chimeric harmonized CPTAC3 1f87d162-cffc-4d4a-bd6f-83a9e8fd8002 9204f075f4cbf3740c67b5e6611d7fca { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01668.RNA-Seq.genomic.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 36ffdb3d-b3e7-45a7-bfe6-424bd8a85606.rna_seq.genomic.gdc_realn.bam 9138462326 BAM genomic harmonized CPTAC3 ce1f34cf-fa01-403b-afad-7049a089ed6d 47637f278261c69b709005be1589d211 { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01668.RNA-Seq.R1_L004.T C3L-01668 UCEC RNA-Seq tumor CPT0186560014 190426_UNC32-K00270_0167_AH7CK7BBXY_TTATAACC-GATATCGA_S12_L004_R1_001.fastq.gz 4529984647 FASTQ R1_L004 unaligned CPTAC3 625ba623-69d4-478f-b201-9c67d3b25697 9c188eaed1b09d15824a51330af22db7 { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01668.RNA-Seq.R2_L004.T C3L-01668 UCEC RNA-Seq tumor CPT0186560014 190426_UNC32-K00270_0167_AH7CK7BBXY_TTATAACC-GATATCGA_S12_L004_R2_001.fastq.gz 4574905222 FASTQ R2_L004 unaligned CPTAC3 1a33f8a2-429e-4d65-b7a5-b02cff29c0c3 4d30b7df5f062cdc692ad321b137f69f { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-01668.RNA-Seq.transcriptome.T.hg38 C3L-01668 UCEC RNA-Seq tumor CPT0186560014 36ffdb3d-b3e7-45a7-bfe6-424bd8a85606.rna_seq.transcriptome.gdc_realn.bam 9695303637 BAM transcriptome harmonized CPTAC3 b1bf11f6-4546-4609-a651-9d9fcd2ce3ef a4a3adf8bb6825ab2c2ddf4af588d4e3 { 'aliquot_tag': 'ALQ_7e72f44a', 'gdc_sample_type': 'Primary Tumor' } C3L-01668.WGS.N C3L-01668 UCEC WGS blood_normal CPT0186620002 CPT0186620002.WholeGenome.RP-1303.bam 67417683678 BAM aligned CPTAC3 62958839-ad4e-44c4-a193-a8cb95a12a69 d729e1031afa672dab79bb47c031236d { 'aliquot_tag': 'ALQ_fd1eb450', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01668.WGS.N.hg38 C3L-01668 UCEC WGS blood_normal CPT0186620002 d15a2060-bdd7-4fab-84f1-fb50911e1a3c_wgs_gdc_realn.bam 99214437041 BAM harmonized CPTAC3 76afbc49-f923-4965-b75d-e9b490e41ad8 83eab647ccb2fa560acbfe2f818e7dc0 { 'aliquot_tag': 'ALQ_fd1eb450', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01668.WGS.T C3L-01668 UCEC WGS tumor CPT0186560011 CPT0186560011.WholeGenome.RP-1303.bam 72799004197 BAM aligned CPTAC3 8adee160-175a-44ec-9e2b-604920cefc4e f3942d20dce9200b63e6c359e101bc8a { 'aliquot_tag': 'ALQ_e1800c5', 'gdc_sample_type': 'Primary Tumor' } @@ -7816,13 +8470,16 @@ C3L-01672.MethArray.Green.T C3L-01672 UCEC Methylation Array tumor CPT0172460011 C3L-01672.MethArray.Red.T C3L-01672 UCEC Methylation Array tumor CPT0172460011 203561620016_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 9ec1aa0a-29da-4f92-8ba6-27cf54c584e8 bcaa1cbbdf20eb092af92713352425fb { 'aliquot_tag': 'ALQ_e82be5df', 'gdc_sample_type': 'Primary Tumor' } C3L-01672.miRNA-Seq.T C3L-01672 UCEC miRNA-Seq tumor CPT0172460018 190508_UNC31-K00269_0215_BH7FYKBBXY_TAATCG_S42_L004_R1_001.unaln.bam 165180931 BAM unaligned CPTAC3 bed92036-e146-4596-b122-0c2e725aac10 3a677e52539630c8bc070b267a7b2005 { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor' } C3L-01672.miRNA-Seq.T.hg38 C3L-01672 UCEC miRNA-Seq tumor CPT0172460018 2ee1eb34-2ef8-4278-88b0-bf4e04c1513d_mirnaseq_gdc_realn.bam 184568905 BAM harmonized CPTAC3 bb426802-86d8-408e-b8da-9d11f7bca3d8 fa2fcfa28e2009d739e2681e921daefd { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01672.RNA-Seq.chimeric.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 1af97e2d-f0ff-48e1-8cf4-e481051200be.rna_seq.chimeric.gdc_realn.bam 41771997 BAM chimeric harmonized CPTAC3 3bf3ece7-47f9-4dd2-afb4-c12619286fc8 ee92fb9a4da8258429ac41ca51a4befb { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01672.RNA-Seq.genomic.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 1af97e2d-f0ff-48e1-8cf4-e481051200be.rna_seq.genomic.gdc_realn.bam 9861043322 BAM genomic harmonized CPTAC3 ba3d7d8a-4a78-4ab6-824a-ab7aa1265210 a3b67e1a1462be18d98a29c374798ae8 { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01672.RNA-Seq.R1_L003.T C3L-01672 UCEC RNA-Seq tumor CPT0172460018 190604_UNC32-K00270_0177_AH7F5VBBXY_CGCTATGT-TCCGACAC_S11_L003_R1_001.fastq.gz 4779290704 FASTQ R1_L003 unaligned CPTAC3 91c8e4fd-03c5-467b-84b9-adb60fa651ac 3998b157177ea6ca48a73aa53c227b55 { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01672.RNA-Seq.R1_.T C3L-01672 UCEC RNA-Seq tumor CPT0172470001 20210729_P3_C2_WB7988-Plate3_S26_R1_001.fastq.gz 12293193288 FASTQ R1_ unaligned CPTAC3 4546350d-fe05-418e-888d-aff3b8305d7d 7e33734613eab2f9163783430c47f80b { 'aliquot_tag': 'ALQ_cc50fd2e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01672.RNA-Seq.R2_L003.T C3L-01672 UCEC RNA-Seq tumor CPT0172460018 190604_UNC32-K00270_0177_AH7F5VBBXY_CGCTATGT-TCCGACAC_S11_L003_R2_001.fastq.gz 5485309573 FASTQ R2_L003 unaligned CPTAC3 12e50250-2bdb-4be7-a42d-ae3973e5629c 8cc3d2c6045aba21aa82b70a29ac4d99 { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01672.RNA-Seq.R2_.T C3L-01672 UCEC RNA-Seq tumor CPT0172470001 20210729_P3_C2_WB7988-Plate3_S26_R2_001.fastq.gz 12669018946 FASTQ R2_ unaligned CPTAC3 ca0fa8b1-fbe0-467b-a655-de2b70930144 41f28187ab0e1cefc74756ac5719a971 { 'aliquot_tag': 'ALQ_cc50fd2e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01672.RNA-Seq.transcriptome.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 1af97e2d-f0ff-48e1-8cf4-e481051200be.rna_seq.transcriptome.gdc_realn.bam 9335481610 BAM transcriptome harmonized CPTAC3 ee5d3f45-781c-4a58-8517-b147fbebad9f 182ffa7c0771a86c4da791d3b869f794 { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01672.RNA-Seq.chimeric.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 43bb7bba-6e90-410f-91a3-5850ed6b7dfb.rna_seq.chimeric.gdc_realn.bam 41765908 BAM chimeric harmonized CPTAC3 9e7cda70-b121-439e-abbb-8154d3103ab8 6a672623897c5d667c992c70b35ec3e0 { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01672.RNA-Seq.chimeric.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172470001 48e941bd-4913-445e-b868-117be151bc12.rna_seq.chimeric.gdc_realn.bam 441475212 BAM chimeric harmonized CPTAC3 c008fee3-eb7e-41e9-aba7-1f8a07406eb6 a8af066521e780e01be02115fcdb827b { 'aliquot_tag': 'ALQ_cc50fd2e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01672.RNA-Seq.genomic.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 43bb7bba-6e90-410f-91a3-5850ed6b7dfb.rna_seq.genomic.gdc_realn.bam 9862605327 BAM genomic harmonized CPTAC3 b43262d9-ed69-49dc-ac16-3c9791f58c5c 9207e294a6920174e078ed95358feca3 { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01672.RNA-Seq.genomic.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172470001 48e941bd-4913-445e-b868-117be151bc12.rna_seq.genomic.gdc_realn.bam 18179364563 BAM genomic harmonized CPTAC3 462604c2-2ff0-4f23-ac85-dae0197a0a42 1998f149a0549b2abb85cf14bde8e369 { 'aliquot_tag': 'ALQ_cc50fd2e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01672.RNA-Seq.R1_L003.T C3L-01672 UCEC RNA-Seq tumor CPT0172460018 190604_UNC32-K00270_0177_AH7F5VBBXY_CGCTATGT-TCCGACAC_S11_L003_R1_001.fastq.gz 4779290704 FASTQ R1_L003 unaligned CPTAC3 91c8e4fd-03c5-467b-84b9-adb60fa651ac 3998b157177ea6ca48a73aa53c227b55 { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01672.RNA-Seq.R2_L003.T C3L-01672 UCEC RNA-Seq tumor CPT0172460018 190604_UNC32-K00270_0177_AH7F5VBBXY_CGCTATGT-TCCGACAC_S11_L003_R2_001.fastq.gz 5485309573 FASTQ R2_L003 unaligned CPTAC3 12e50250-2bdb-4be7-a42d-ae3973e5629c 8cc3d2c6045aba21aa82b70a29ac4d99 { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01672.RNA-Seq.T C3L-01672 UCEC RNA-Seq tumor CPT0172470001 20210729_P3_C2_WB7988-Plate3_S26_R1_001.fastq.gz 12293193288 FASTQ unaligned CPTAC3 4546350d-fe05-418e-888d-aff3b8305d7d 7e33734613eab2f9163783430c47f80b +C3L-01672.RNA-Seq.T C3L-01672 UCEC RNA-Seq tumor CPT0172470001 20210729_P3_C2_WB7988-Plate3_S26_R2_001.fastq.gz 12669018946 FASTQ unaligned CPTAC3 ca0fa8b1-fbe0-467b-a655-de2b70930144 41f28187ab0e1cefc74756ac5719a971 +C3L-01672.RNA-Seq.transcriptome.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172460018 43bb7bba-6e90-410f-91a3-5850ed6b7dfb.rna_seq.transcriptome.gdc_realn.bam 10661343612 BAM transcriptome harmonized CPTAC3 5a3abcc3-b1ff-4d7f-8ab2-34fcd005404d e458f864bf48154d1e473a6dd08795dd { 'aliquot_tag': 'ALQ_91f75d7b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01672.RNA-Seq.transcriptome.T.hg38 C3L-01672 UCEC RNA-Seq tumor CPT0172470001 48e941bd-4913-445e-b868-117be151bc12.rna_seq.transcriptome.gdc_realn.bam 11615774782 BAM transcriptome harmonized CPTAC3 7a6afaf6-da92-411c-8cd1-14efbbc34e38 35a60b92778d0fd614378a70c8104862 { 'aliquot_tag': 'ALQ_cc50fd2e', 'gdc_sample_type': 'Primary Tumor' } C3L-01672.WGS.N C3L-01672 UCEC WGS blood_normal CPT0172490002 CPT0172490002.WholeGenome.RP-1303.bam 57878542213 BAM aligned CPTAC3 e76157ff-6a65-4ce6-8840-a110d5e4df0b 876b509b7e0f62f3810d546eadde7bd3 { 'aliquot_tag': 'ALQ_ea6912f5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01672.WGS.N.hg38 C3L-01672 UCEC WGS blood_normal CPT0172490002 e9e086cf-40bd-436f-8233-c40dbcfe1fd2_wgs_gdc_realn.bam 86518489674 BAM harmonized CPTAC3 3b4d126d-5e06-4439-96d0-2c5deeef44b0 959ac4b4ec06336ba1f0052b06a0b3d4 { 'aliquot_tag': 'ALQ_ea6912f5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01672.WGS.T C3L-01672 UCEC WGS tumor CPT0172460011 CPT0172460011.WholeGenome.RP-1303.bam 83051373450 BAM aligned CPTAC3 e9f81954-c511-4028-8603-704c8afcbee8 da634277ee702b15e61b5646655557fa { 'aliquot_tag': 'ALQ_e82be5df', 'gdc_sample_type': 'Primary Tumor' } @@ -7839,16 +8496,16 @@ C3L-01676.miRNA-Seq.A C3L-01676 CCRCC miRNA-Seq tissue_normal CPT0172660010 1901 C3L-01676.miRNA-Seq.A.hg38 C3L-01676 CCRCC miRNA-Seq tissue_normal CPT0172660010 daaa4cda-d850-47f9-a8e0-54d9e81ff020_mirnaseq_gdc_realn.bam 282084382 BAM harmonized CPTAC3 a2a51cc6-0f87-4fc8-87a5-58d04d0788d5 5df1c93fbc310dac3c1bf2d8d8682b50 { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01676.miRNA-Seq.T C3L-01676 CCRCC miRNA-Seq tumor CPT0172630009 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTGAT_S28_L005_R1_001.unaln.bam 202871219 BAM unaligned CPTAC3 6eb54d5a-5a1a-4314-b4fa-a1fbd9e39429 b8ef9fc5a144ec4d40161ce2ef8655cd { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor' } C3L-01676.miRNA-Seq.T.hg38 C3L-01676 CCRCC miRNA-Seq tumor CPT0172630009 73de7a28-0678-4948-b6be-909118a3b666_mirnaseq_gdc_realn.bam 220750088 BAM harmonized CPTAC3 4782b961-a23e-4541-8762-666b4872b20c 327024361f52951577abcac86f2acc99 { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01676.RNA-Seq.chimeric.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 3a3f5b7d-1509-4e5a-873b-824cc64d4dfc.rna_seq.chimeric.gdc_realn.bam 31859575 BAM chimeric harmonized CPTAC3 e8a46b16-9e1f-4a85-a529-c039d7173f74 d46a30cffcc59031a934cbebe630540a { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01676.RNA-Seq.chimeric.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 4c92dcd6-d517-4806-aacf-bc017031f488.rna_seq.chimeric.gdc_realn.bam 36786188 BAM chimeric harmonized CPTAC3 2d53f49a-2288-4061-837d-3805268f7d04 2d14fc96b23dce0e0b02b7ae327df430 { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01676.RNA-Seq.genomic.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 3a3f5b7d-1509-4e5a-873b-824cc64d4dfc.rna_seq.genomic.gdc_realn.bam 8793901829 BAM genomic harmonized CPTAC3 b48e9a1b-ad97-4b64-a19d-98ea34851ab0 a459999e9706281da3dd6d274b68620b { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01676.RNA-Seq.genomic.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 4c92dcd6-d517-4806-aacf-bc017031f488.rna_seq.genomic.gdc_realn.bam 8151916379 BAM genomic harmonized CPTAC3 2acb264e-ec65-4eb4-bb5d-43da85c7af6f 1d1f240e1219fce929adeba365f55933 { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01676.RNA-Seq.R1_L005.T C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATCACG_S19_L005_R1_001.fastq.gz 3941964007 FASTQ R1_L005 unaligned CPTAC3 ec31cd8d-5b2f-4750-9054-397c28aeb765 f9494c39b9a9f8bc56fda3b50217ec32 { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01676.RNA-Seq.R1_L008.A C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 190118_UNC32-K00270_0139_AH3CHKBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3725556577 FASTQ R1_L008 unaligned CPTAC3 f077dc87-d26e-4e05-b323-58693f76fafa c4d68d4dc44a93bad65f995e92ee43a9 { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01676.RNA-Seq.R2_L005.T C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATCACG_S19_L005_R2_001.fastq.gz 3669981710 FASTQ R2_L005 unaligned CPTAC3 b553063c-7214-4005-a709-2b5b654793a2 02fa289642cc62cf2bfbfdec44d02767 { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01676.RNA-Seq.R2_L008.A C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 190118_UNC32-K00270_0139_AH3CHKBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 3900855135 FASTQ R2_L008 unaligned CPTAC3 de87a9ab-7626-4dae-bb03-68f10e68c9a2 3d3f07687efb9cb3dba9e2a5340fbb39 { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01676.RNA-Seq.transcriptome.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 3a3f5b7d-1509-4e5a-873b-824cc64d4dfc.rna_seq.transcriptome.gdc_realn.bam 8220729642 BAM transcriptome harmonized CPTAC3 b7cc77e2-bb00-4927-bcff-bad7c63bba28 35f9aa4dbae4fe187b6dcef88b6ad6c5 { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01676.RNA-Seq.transcriptome.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 4c92dcd6-d517-4806-aacf-bc017031f488.rna_seq.transcriptome.gdc_realn.bam 8980217392 BAM transcriptome harmonized CPTAC3 2def3536-ebc8-4c02-8d93-33cca65b6d76 a20a685dd35f41b1df2df00b9097c40f { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01676.RNA-Seq.chimeric.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 40cd8e81-f86c-4af4-a51d-6b28b5636b29.rna_seq.chimeric.gdc_realn.bam 31848678 BAM chimeric harmonized CPTAC3 bbf9210e-7f08-41a8-9c23-fa694aff216c 5c4001aaaaba85c3b5fd14992f0d8c9c { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01676.RNA-Seq.chimeric.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 00ac4501-7754-45f8-a638-cab5e79b0a1d.rna_seq.chimeric.gdc_realn.bam 36771874 BAM chimeric harmonized CPTAC3 7ff20692-055c-493b-8ba2-1354c097c27c 048b2f81e7846c7fdd847252da7fd2a1 { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01676.RNA-Seq.genomic.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 40cd8e81-f86c-4af4-a51d-6b28b5636b29.rna_seq.genomic.gdc_realn.bam 8794901139 BAM genomic harmonized CPTAC3 f2e23202-7def-42c4-9bbc-5e5932d81380 f3bf8e5d28823760bd6dfffc9984febb { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01676.RNA-Seq.genomic.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 00ac4501-7754-45f8-a638-cab5e79b0a1d.rna_seq.genomic.gdc_realn.bam 8153520511 BAM genomic harmonized CPTAC3 6594eadc-77b4-4244-b63c-7bec55ae47d0 2728edb918e57ca6abfde276e65c66ef { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01676.RNA-Seq.R1_L005.T C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATCACG_S19_L005_R1_001.fastq.gz 3941964007 FASTQ R1_L005 unaligned CPTAC3 ec31cd8d-5b2f-4750-9054-397c28aeb765 f9494c39b9a9f8bc56fda3b50217ec32 { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01676.RNA-Seq.R1_L008.A C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 190118_UNC32-K00270_0139_AH3CHKBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3725556577 FASTQ R1_L008 unaligned CPTAC3 f077dc87-d26e-4e05-b323-58693f76fafa c4d68d4dc44a93bad65f995e92ee43a9 { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-01676.RNA-Seq.R2_L005.T C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATCACG_S19_L005_R2_001.fastq.gz 3669981710 FASTQ R2_L005 unaligned CPTAC3 b553063c-7214-4005-a709-2b5b654793a2 02fa289642cc62cf2bfbfdec44d02767 { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01676.RNA-Seq.R2_L008.A C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 190118_UNC32-K00270_0139_AH3CHKBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 3900855135 FASTQ R2_L008 unaligned CPTAC3 de87a9ab-7626-4dae-bb03-68f10e68c9a2 3d3f07687efb9cb3dba9e2a5340fbb39 { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-01676.RNA-Seq.transcriptome.A.hg38 C3L-01676 CCRCC RNA-Seq tissue_normal CPT0172660010 40cd8e81-f86c-4af4-a51d-6b28b5636b29.rna_seq.transcriptome.gdc_realn.bam 9326080858 BAM transcriptome harmonized CPTAC3 ff953ec8-486c-435c-b2a8-deb138b0be53 397e0f6027b50645e1aa2d5237411cb2 { 'aliquot_tag': 'ALQ_d2e47442', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01676.RNA-Seq.transcriptome.T.hg38 C3L-01676 CCRCC RNA-Seq tumor CPT0172630009 00ac4501-7754-45f8-a638-cab5e79b0a1d.rna_seq.transcriptome.gdc_realn.bam 10044575740 BAM transcriptome harmonized CPTAC3 a6368e4a-e72d-4b28-9a7b-52c650e2c253 303b249efc715eeead54f85efa9079ad { 'aliquot_tag': 'ALQ_7ac372d7', 'gdc_sample_type': 'Primary Tumor' } C3L-01676.WGS.A C3L-01676 CCRCC WGS tissue_normal CPT0172660007 CPT0172660007.WholeGenome.RP-1303.bam 59331331744 BAM aligned CPTAC3 fd41199f-ac5c-4870-8265-aa02ac939968 88183a12e913b27d30e8ddb5b53b0e68 { 'aliquot_tag': 'ALQ_559bd0a0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01676.WGS.A.hg38 C3L-01676 CCRCC WGS tissue_normal CPT0172660007 4a485c4d-1de8-4da1-b84c-5baaba33a343_wgs_gdc_realn.bam 87258780249 BAM harmonized CPTAC3 4b24dd59-07d0-4fdf-8191-b4dca33e4ca2 9879a0de371bcaafe73bb2425ba2f33a { 'aliquot_tag': 'ALQ_559bd0a0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01676.WGS.N C3L-01676 CCRCC WGS blood_normal CPT0172830002 CPT0172830002.WholeGenome.RP-1303.bam 55472008185 BAM aligned CPTAC3 25158770-d2a5-48cf-bcdd-a97f3785437c 41dd701c2fcc3b3d3a06f71b2232dd3a { 'aliquot_tag': 'ALQ_d71bca2f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -7869,16 +8526,16 @@ C3L-01681.miRNA-Seq.A C3L-01681 CCRCC miRNA-Seq tissue_normal CPT0110770009 1901 C3L-01681.miRNA-Seq.A.hg38 C3L-01681 CCRCC miRNA-Seq tissue_normal CPT0110770009 b6a5e4c3-9c33-409f-a91c-f09927496e46_mirnaseq_gdc_realn.bam 195520436 BAM harmonized CPTAC3 0a8c457e-3037-44a8-8deb-0053142eb6aa 0bb8e2317b204799636712c0a1b39735 { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01681.miRNA-Seq.T C3L-01681 CCRCC miRNA-Seq tumor CPT0110740005 190108_UNC31-K00269_0176_AHYGLVBBXX_GTTTCG_S21_L002_R1_001.unaln.bam 224730095 BAM unaligned CPTAC3 2d07cf93-56cf-44bb-9fa2-fcb91f47c33c 3bb1cbaf414e79e43438302ea534e019 { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor' } C3L-01681.miRNA-Seq.T.hg38 C3L-01681 CCRCC miRNA-Seq tumor CPT0110740005 188a62e5-7279-462f-9183-b6e33c7dcb5a_mirnaseq_gdc_realn.bam 246011848 BAM harmonized CPTAC3 5d808e77-eddd-4b96-9a99-348e480ca12d 91d11c4768f1bd0467963a84fc051ec9 { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01681.RNA-Seq.chimeric.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 64cc7ac4-d48d-4745-822d-459165a43dcd.rna_seq.chimeric.gdc_realn.bam 168397865 BAM chimeric harmonized CPTAC3 3b5515a7-fa12-4641-9508-2f3497dcdff1 3902e315d9ddaa9c750d9af170c5d184 { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01681.RNA-Seq.chimeric.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 18fd12bf-17a3-462c-9356-73b1117e2be0.rna_seq.chimeric.gdc_realn.bam 25360477 BAM chimeric harmonized CPTAC3 5e8f0550-b464-4d25-9e9b-d0abd656a549 6509384cacf2c0f3c64014786ce0f468 { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01681.RNA-Seq.genomic.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 64cc7ac4-d48d-4745-822d-459165a43dcd.rna_seq.genomic.gdc_realn.bam 7573718402 BAM genomic harmonized CPTAC3 4adfa821-0851-4b7e-964e-a6283d5162b8 651cc8a547679f73c9a4255c37470b51 { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01681.RNA-Seq.genomic.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 18fd12bf-17a3-462c-9356-73b1117e2be0.rna_seq.genomic.gdc_realn.bam 7248150025 BAM genomic harmonized CPTAC3 c5ebeefe-de66-40a2-a93e-e03a53476e6e a9efe4c8e562f3cf16304cc5625116a0 { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01681.RNA-Seq.R1_L005.A C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L005_R1_001.fastq.gz 3297944588 FASTQ R1_L005 unaligned CPTAC3 608c1ec2-9e22-4426-81d3-3c984c3364e6 9179aaeb0559171f131684b6cb25dbc8 { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01681.RNA-Seq.R1_L005.T C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 181207_UNC32-K00270_0137_BH2LYCBBXY_CGTACG_S19_L005_R1_001.fastq.gz 3216346993 FASTQ R1_L005 unaligned CPTAC3 909a8bf9-8afb-4658-818e-9249d1572e7b 3f327224030881f28b2472b09ac5488a { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01681.RNA-Seq.R2_L005.A C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L005_R2_001.fastq.gz 3684169657 FASTQ R2_L005 unaligned CPTAC3 94364a31-4b41-48af-9fe0-ae8ca7d2317b 691473d3773d5fb1f8b9b8cf2062319a { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01681.RNA-Seq.R2_L005.T C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 181207_UNC32-K00270_0137_BH2LYCBBXY_CGTACG_S19_L005_R2_001.fastq.gz 3622505559 FASTQ R2_L005 unaligned CPTAC3 d4531d2e-9dc0-4119-8684-94045307a733 cc0aa22f508f06d7f472a1ce3f5662a6 { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01681.RNA-Seq.transcriptome.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 64cc7ac4-d48d-4745-822d-459165a43dcd.rna_seq.transcriptome.gdc_realn.bam 6967266590 BAM transcriptome harmonized CPTAC3 f31e0ada-a28f-478b-9c12-f26a8add5fd6 72f488f786f598f232cffa34ea0a0447 { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01681.RNA-Seq.transcriptome.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 18fd12bf-17a3-462c-9356-73b1117e2be0.rna_seq.transcriptome.gdc_realn.bam 8000989903 BAM transcriptome harmonized CPTAC3 e6a2a5b7-2be4-4ecd-9e00-594024170b07 bd4ac3f4a956388494a901122934e322 { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01681.RNA-Seq.chimeric.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 961af4f3-bcae-43bd-9876-bcbe564a7e3f.rna_seq.chimeric.gdc_realn.bam 168371847 BAM chimeric harmonized CPTAC3 f7864bb8-5a9e-4a18-bff5-916c786002df 548fdcc8fb7bdc809844cfef5974e827 { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01681.RNA-Seq.chimeric.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 b53cf31b-233a-487c-bd9e-9367318a8808.rna_seq.chimeric.gdc_realn.bam 25362326 BAM chimeric harmonized CPTAC3 ebaaec90-cd75-4769-b277-241279624b11 81d455149b3d540c715c5a21d633cdb5 { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01681.RNA-Seq.genomic.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 961af4f3-bcae-43bd-9876-bcbe564a7e3f.rna_seq.genomic.gdc_realn.bam 7574739653 BAM genomic harmonized CPTAC3 ab20fbbc-cd8c-4424-bfc4-5273727b3390 39061d9454532644e51bf5b903ead04e { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01681.RNA-Seq.genomic.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 b53cf31b-233a-487c-bd9e-9367318a8808.rna_seq.genomic.gdc_realn.bam 7248781651 BAM genomic harmonized CPTAC3 523e6d0f-0240-4ec3-bf42-bf621e3befdf 4e1d02ab8d0f806a911e050274272272 { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01681.RNA-Seq.R1_L005.A C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L005_R1_001.fastq.gz 3297944588 FASTQ R1_L005 unaligned CPTAC3 608c1ec2-9e22-4426-81d3-3c984c3364e6 9179aaeb0559171f131684b6cb25dbc8 { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-01681.RNA-Seq.R1_L005.T C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 181207_UNC32-K00270_0137_BH2LYCBBXY_CGTACG_S19_L005_R1_001.fastq.gz 3216346993 FASTQ R1_L005 unaligned CPTAC3 909a8bf9-8afb-4658-818e-9249d1572e7b 3f327224030881f28b2472b09ac5488a { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01681.RNA-Seq.R2_L005.A C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L005_R2_001.fastq.gz 3684169657 FASTQ R2_L005 unaligned CPTAC3 94364a31-4b41-48af-9fe0-ae8ca7d2317b 691473d3773d5fb1f8b9b8cf2062319a { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-01681.RNA-Seq.R2_L005.T C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 181207_UNC32-K00270_0137_BH2LYCBBXY_CGTACG_S19_L005_R2_001.fastq.gz 3622505559 FASTQ R2_L005 unaligned CPTAC3 d4531d2e-9dc0-4119-8684-94045307a733 cc0aa22f508f06d7f472a1ce3f5662a6 { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01681.RNA-Seq.transcriptome.A.hg38 C3L-01681 CCRCC RNA-Seq tissue_normal CPT0110770009 961af4f3-bcae-43bd-9876-bcbe564a7e3f.rna_seq.transcriptome.gdc_realn.bam 7935237069 BAM transcriptome harmonized CPTAC3 35014a73-3b04-429e-8fed-d3714f2e9af5 1112cb963674fe59d178b6bdc7827e37 { 'aliquot_tag': 'ALQ_15ef1f1c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01681.RNA-Seq.transcriptome.T.hg38 C3L-01681 CCRCC RNA-Seq tumor CPT0110740005 b53cf31b-233a-487c-bd9e-9367318a8808.rna_seq.transcriptome.gdc_realn.bam 9047242911 BAM transcriptome harmonized CPTAC3 f55f5d96-f96d-407a-be31-0e8a2173f3fe 34cf6b607a1a5576d3b48e1ed46955b9 { 'aliquot_tag': 'ALQ_5bf929e7', 'gdc_sample_type': 'Primary Tumor' } C3L-01681.WGS.A C3L-01681 CCRCC WGS tissue_normal CPT0110770006 CPT0110770006.WholeGenome.RP-1303.bam 59572690162 BAM aligned CPTAC3 9c5dd328-de58-4ca0-9970-9a6ce3367e7a 39b093fe38f25e41ba6c5c8276de737c { 'aliquot_tag': 'ALQ_8550028d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01681.WGS.A.hg38 C3L-01681 CCRCC WGS tissue_normal CPT0110770006 04fdbf6b-d048-4d4f-b92e-6705a35015da_wgs_gdc_realn.bam 85641191076 BAM harmonized CPTAC3 9bd6246f-f65e-48ff-a227-be1fe643a524 3af39fe0d1c711800652d39a44d37820 { 'aliquot_tag': 'ALQ_8550028d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01681.WGS.N C3L-01681 CCRCC WGS blood_normal CPT0112350002 CPT0112350002.WholeGenome.RP-1303.bam 58863039638 BAM aligned CPTAC3 504b1fec-584c-485f-ba4e-ab06c9942a7c 796a790d991d51db9e1fb4fe53e18870 { 'aliquot_tag': 'ALQ_f4f3c6cb', 'gdc_sample_type': 'Blood Derived Normal' } @@ -7901,12 +8558,12 @@ C3L-01682.miRNA-Seq.T C3L-01682 LUAD miRNA-Seq tumor CPT0110860007 181119_UNC31- C3L-01682.miRNA-Seq.T.hg38 C3L-01682 LUAD miRNA-Seq tumor CPT0110860007 8d034691-fdd2-42ea-8cd1-f057530d414f_mirnaseq_gdc_realn.bam 206196176 BAM harmonized CPTAC3 40ae77c1-b150-468e-bf05-8bdf72cff661 3997d306e39eb9b942db34805d35d8c8 { 'aliquot_tag': 'ALQ_3e61a97e', 'gdc_sample_type': 'Primary Tumor' } C3L-01682.RNA-Seq.chimeric.A.hg38 C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 33dda075-484c-42c1-8f48-3a72288e427f.rna_seq.chimeric.gdc_realn.bam 129043099 BAM chimeric harmonized CPTAC3 98341ec1-460d-4c92-8ebb-30416caf4422 6ee13a34559033a338def0b9dbe3e073 { 'aliquot_tag': 'ALQ_cb360e39', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01682.RNA-Seq.chimeric.T.hg38 C3L-01682 LUAD RNA-Seq tumor CPT0110860007 05c9a666-3e80-4d01-b2a8-d889ea4c0ab0.rna_seq.chimeric.gdc_realn.bam 146727319 BAM chimeric harmonized CPTAC3 b0e6cd52-6c61-49dc-8255-69acf215c65e db89d4fd8cfd0f16dadf408b605005f0 { 'aliquot_tag': 'ALQ_3e61a97e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01682.RNA-Seq.genomic.A.hg38 C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 33dda075-484c-42c1-8f48-3a72288e427f.rna_seq.genomic.gdc_realn.bam 7968347815 BAM genomic harmonized CPTAC3 15472452-c9ef-4e65-813e-193a010dbce0 209026fbace34f5740c11581e3f0df67 { 'aliquot_tag': 'ALQ_cb360e39', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01682.RNA-Seq.genomic.T.hg38 C3L-01682 LUAD RNA-Seq tumor CPT0110860007 05c9a666-3e80-4d01-b2a8-d889ea4c0ab0.rna_seq.genomic.gdc_realn.bam 8356835607 BAM genomic harmonized CPTAC3 8bb13bcc-0d32-40a7-8731-8738dda09612 06e5c8af21f5f0d0b79882378c1572d8 { 'aliquot_tag': 'ALQ_3e61a97e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01682.RNA-Seq.R1_L003.A C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L003_R1_001.fastq.gz 3788560229 FASTQ R1_L003 unaligned CPTAC3 9334bab4-7c2b-4cf2-a4c7-d93abab614d7 d6c22de22a59d537c44a0a4d8f80464e { 'aliquot_tag': 'ALQ_cb360e39', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01682.RNA-Seq.R1_L005.T C3L-01682 LUAD RNA-Seq tumor CPT0110860007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGAAA_S17_L005_R1_001.fastq.gz 3717744196 FASTQ R1_L005 unaligned CPTAC3 283b1517-8776-49a9-a806-0d20a241039f 7e24c4bcddb090cd48c91288f356359e { 'aliquot_tag': 'ALQ_3e61a97e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01682.RNA-Seq.R2_L003.A C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L003_R2_001.fastq.gz 4123819563 FASTQ R2_L003 unaligned CPTAC3 678fb586-7d73-45c1-9180-691619007710 b0e34508c61d1768354cafc5e1931d3e { 'aliquot_tag': 'ALQ_cb360e39', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01682.RNA-Seq.R2_L005.T C3L-01682 LUAD RNA-Seq tumor CPT0110860007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 3960909708 FASTQ R2_L005 unaligned CPTAC3 d9c52ed7-9493-4e3e-a21e-3dba392b3c57 332cc0678499a4ad7de5c7bfd3708beb { 'aliquot_tag': 'ALQ_3e61a97e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01682.RNA-Seq.genomic.A.hg38 C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 33dda075-484c-42c1-8f48-3a72288e427f.rna_seq.genomic.gdc_realn.bam 7968347815 BAM genomic harmonized CPTAC3 feb6007f-ef8e-4541-bef4-f0104ff30a55 209026fbace34f5740c11581e3f0df67 { 'aliquot_tag': 'ALQ_cb360e39', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01682.RNA-Seq.genomic.T.hg38 C3L-01682 LUAD RNA-Seq tumor CPT0110860007 05c9a666-3e80-4d01-b2a8-d889ea4c0ab0.rna_seq.genomic.gdc_realn.bam 8356835607 BAM genomic harmonized CPTAC3 b663e8c2-9d45-4d60-b311-1ef89b7f09d4 06e5c8af21f5f0d0b79882378c1572d8 { 'aliquot_tag': 'ALQ_3e61a97e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01682.RNA-Seq.R1_L003.A C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L003_R1_001.fastq.gz 3788560229 FASTQ R1_L003 unaligned CPTAC3 9334bab4-7c2b-4cf2-a4c7-d93abab614d7 d6c22de22a59d537c44a0a4d8f80464e { 'aliquot_tag': 'ALQ_cb360e39', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-01682.RNA-Seq.R1_L005.T C3L-01682 LUAD RNA-Seq tumor CPT0110860007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGAAA_S17_L005_R1_001.fastq.gz 3717744196 FASTQ R1_L005 unaligned CPTAC3 283b1517-8776-49a9-a806-0d20a241039f 7e24c4bcddb090cd48c91288f356359e { 'aliquot_tag': 'ALQ_3e61a97e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01682.RNA-Seq.R2_L003.A C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L003_R2_001.fastq.gz 4123819563 FASTQ R2_L003 unaligned CPTAC3 678fb586-7d73-45c1-9180-691619007710 b0e34508c61d1768354cafc5e1931d3e { 'aliquot_tag': 'ALQ_cb360e39', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-01682.RNA-Seq.R2_L005.T C3L-01682 LUAD RNA-Seq tumor CPT0110860007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 3960909708 FASTQ R2_L005 unaligned CPTAC3 d9c52ed7-9493-4e3e-a21e-3dba392b3c57 332cc0678499a4ad7de5c7bfd3708beb { 'aliquot_tag': 'ALQ_3e61a97e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-01682.RNA-Seq.transcriptome.A.hg38 C3L-01682 LUAD RNA-Seq tissue_normal CPT0110890006 33dda075-484c-42c1-8f48-3a72288e427f.rna_seq.transcriptome.gdc_realn.bam 9378602137 BAM transcriptome harmonized CPTAC3 388a1231-a9fc-4671-b19f-d5804810cb9f d4cdd53620263ece88da27a35f10067c { 'aliquot_tag': 'ALQ_cb360e39', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01682.RNA-Seq.transcriptome.T.hg38 C3L-01682 LUAD RNA-Seq tumor CPT0110860007 05c9a666-3e80-4d01-b2a8-d889ea4c0ab0.rna_seq.transcriptome.gdc_realn.bam 9515046692 BAM transcriptome harmonized CPTAC3 072ad95e-7852-4536-bc85-2c39f2ed4f9d ddfdbe55069f67d69ed990e454c316dd { 'aliquot_tag': 'ALQ_3e61a97e', 'gdc_sample_type': 'Primary Tumor' } C3L-01682.WGS.A C3L-01682 LUAD WGS tissue_normal CPT0110890009 CPT0110890009.WholeGenome.RP-1303.bam 53869757710 BAM aligned CPTAC3 fb716f55-ca56-4082-bfa3-3818372ee252 02ce72e78439ca2d6ca1a2f578a1f9d0 { 'aliquot_tag': 'ALQ_5b8913a8', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -7932,11 +8589,11 @@ C3L-01683.miRNA-Seq.T.hg38 C3L-01683 LUAD miRNA-Seq tumor CPT0110980007 68464e96 C3L-01683.RNA-Seq.chimeric.A.hg38 C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 8534c816-e466-481d-bb84-2e97ef87c126.rna_seq.chimeric.gdc_realn.bam 78533877 BAM chimeric harmonized CPTAC3 c7a6f0fe-c7af-4c2d-b059-65b975e2fa8b c82d203c31084704232a7e37d93e2611 { 'aliquot_tag': 'ALQ_d1df1653', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01683.RNA-Seq.chimeric.T.hg38 C3L-01683 LUAD RNA-Seq tumor CPT0110980007 f5abc0fb-5b5c-44f5-85cd-0ec631a42eb9.rna_seq.chimeric.gdc_realn.bam 89356086 BAM chimeric harmonized CPTAC3 68e66c3b-989e-4d02-8aac-02632aa1178e 5cabe2a78de27429165df2820188b6fe { 'aliquot_tag': 'ALQ_4a0dc4ba', 'gdc_sample_type': 'Primary Tumor' } C3L-01683.RNA-Seq.genomic.A.hg38 C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 8534c816-e466-481d-bb84-2e97ef87c126.rna_seq.genomic.gdc_realn.bam 9116261795 BAM genomic harmonized CPTAC3 7da7a8a9-e817-42d7-8ff5-b709164c336c 0166b8928793added1a7814f7f21f441 { 'aliquot_tag': 'ALQ_d1df1653', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01683.RNA-Seq.genomic.T.hg38 C3L-01683 LUAD RNA-Seq tumor CPT0110980007 f5abc0fb-5b5c-44f5-85cd-0ec631a42eb9.rna_seq.genomic.gdc_realn.bam 10026209133 BAM genomic harmonized CPTAC3 6809c054-7000-4130-a037-789131ab82a6 293829018d56eb3e0e2d56e9f4a6f005 { 'aliquot_tag': 'ALQ_4a0dc4ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-01683.RNA-Seq.R1_L001.A C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L001_R1_001.fastq.gz 4215965437 FASTQ R1_L001 unaligned CPTAC3 7747f420-f998-412b-b1d4-cdd41c2d2b87 8b5944aa42f885febf2ef1c50d355316 { 'aliquot_tag': 'ALQ_d1df1653', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01683.RNA-Seq.R1_L005.T C3L-01683 LUAD RNA-Seq tumor CPT0110980007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGGCC_S16_L005_R1_001.fastq.gz 4185079045 FASTQ R1_L005 unaligned CPTAC3 8ae50b60-0799-4883-9569-f4cca6b21954 f51b87dc113969a9095c3eaf8dfd963e { 'aliquot_tag': 'ALQ_4a0dc4ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-01683.RNA-Seq.R2_L001.A C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L001_R2_001.fastq.gz 4713960213 FASTQ R2_L001 unaligned CPTAC3 f797dd82-4b0f-4bac-b00b-e03ef2ecbec9 efbe3761f3fd232510b87d92a46c974e { 'aliquot_tag': 'ALQ_d1df1653', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01683.RNA-Seq.R2_L005.T C3L-01683 LUAD RNA-Seq tumor CPT0110980007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGGCC_S16_L005_R2_001.fastq.gz 4637712849 FASTQ R2_L005 unaligned CPTAC3 cefddaae-c3db-4a31-925a-32c6dc095613 550d2f1011ee4dbb71d37fb725cf3c00 { 'aliquot_tag': 'ALQ_4a0dc4ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-01683.RNA-Seq.genomic.T.hg38 C3L-01683 LUAD RNA-Seq tumor CPT0110980007 f5abc0fb-5b5c-44f5-85cd-0ec631a42eb9.rna_seq.genomic.gdc_realn.bam 10026209133 BAM genomic harmonized CPTAC3 5ec371ad-e9b2-4ba9-a14d-c0d8f3ee765d 293829018d56eb3e0e2d56e9f4a6f005 { 'aliquot_tag': 'ALQ_4a0dc4ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-01683.RNA-Seq.R1_L001.A C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L001_R1_001.fastq.gz 4215965437 FASTQ R1_L001 unaligned CPTAC3 7747f420-f998-412b-b1d4-cdd41c2d2b87 8b5944aa42f885febf2ef1c50d355316 { 'aliquot_tag': 'ALQ_d1df1653', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-01683.RNA-Seq.R1_L005.T C3L-01683 LUAD RNA-Seq tumor CPT0110980007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGGCC_S16_L005_R1_001.fastq.gz 4185079045 FASTQ R1_L005 unaligned CPTAC3 8ae50b60-0799-4883-9569-f4cca6b21954 f51b87dc113969a9095c3eaf8dfd963e { 'aliquot_tag': 'ALQ_4a0dc4ba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01683.RNA-Seq.R2_L001.A C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L001_R2_001.fastq.gz 4713960213 FASTQ R2_L001 unaligned CPTAC3 f797dd82-4b0f-4bac-b00b-e03ef2ecbec9 efbe3761f3fd232510b87d92a46c974e { 'aliquot_tag': 'ALQ_d1df1653', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-01683.RNA-Seq.R2_L005.T C3L-01683 LUAD RNA-Seq tumor CPT0110980007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTGGCC_S16_L005_R2_001.fastq.gz 4637712849 FASTQ R2_L005 unaligned CPTAC3 cefddaae-c3db-4a31-925a-32c6dc095613 550d2f1011ee4dbb71d37fb725cf3c00 { 'aliquot_tag': 'ALQ_4a0dc4ba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-01683.RNA-Seq.transcriptome.A.hg38 C3L-01683 LUAD RNA-Seq tissue_normal CPT0111590006 8534c816-e466-481d-bb84-2e97ef87c126.rna_seq.transcriptome.gdc_realn.bam 10419663043 BAM transcriptome harmonized CPTAC3 f5a8d8fc-96b1-4c24-a73f-5c420357bb88 c00548c49fc5fa69ea3e812379cc7f33 { 'aliquot_tag': 'ALQ_d1df1653', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01683.RNA-Seq.transcriptome.T.hg38 C3L-01683 LUAD RNA-Seq tumor CPT0110980007 f5abc0fb-5b5c-44f5-85cd-0ec631a42eb9.rna_seq.transcriptome.gdc_realn.bam 10160365080 BAM transcriptome harmonized CPTAC3 bddff0d4-d93d-49bf-907f-405fef141ea1 cae68a62ceda2b30e03a81ea1585f3a5 { 'aliquot_tag': 'ALQ_4a0dc4ba', 'gdc_sample_type': 'Primary Tumor' } C3L-01683.Targeted.T C3L-01683 LUAD Targeted Sequencing tumor CPT0110980010 CPT0110980010.CustomSelection.RP-1303.PDO-18786.bam 6328057921 BAM aligned CPTAC3 32e32b84-b915-48f1-9b3c-7c34f27c3644 22616d8aba00b738e44d121620ed8823 { 'aliquot_tag': 'ALQ_cd726058', 'gdc_sample_type': 'Primary Tumor' } @@ -7962,9 +8619,9 @@ C3L-01687.ADD_7b25c879.WXS.T.hg38 C3L-01687 PDA WXS tumor CPT0094630010 c1d8b688 C3L-01687.miRNA-Seq.T C3L-01687 PDA miRNA-Seq tumor CPT0094630007 180828_UNC32-K00270_0112_AHWTLNBBXX_ATGTCA_S7_L006_R1_001.unaln.bam 275072884 BAM unaligned CPTAC3 5f576970-48a9-4e50-ae00-b0cb6ef0ed7a 458dc48f76cfc9446f72f0e83c6ed9ae { 'aliquot_tag': 'ALQ_fc5a6c9b', 'gdc_sample_type': 'Primary Tumor' } C3L-01687.miRNA-Seq.T.hg38 C3L-01687 PDA miRNA-Seq tumor CPT0094630007 4f465a6a-7726-486b-9a47-0d9ba0f7054c_mirnaseq_gdc_realn.bam 306088175 BAM harmonized CPTAC3 8795eac6-d7ec-4d20-8ad2-363ff7f85087 a6a415c370ceafb5c1f6534628e84ba1 { 'aliquot_tag': 'ALQ_fc5a6c9b', 'gdc_sample_type': 'Primary Tumor' } C3L-01687.RNA-Seq.chimeric.T.hg38 C3L-01687 PDA RNA-Seq tumor CPT0094630007 2d264d56-1c97-446e-b3b8-46ccde4eb2b4.rna_seq.chimeric.gdc_realn.bam 33935122 BAM chimeric harmonized CPTAC3 ebd09d53-df7b-4356-a8c5-860525215a38 3f36b711f36fb96467903e5a1e22dba7 { 'aliquot_tag': 'ALQ_fc5a6c9b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01687.RNA-Seq.genomic.T.hg38 C3L-01687 PDA RNA-Seq tumor CPT0094630007 2d264d56-1c97-446e-b3b8-46ccde4eb2b4.rna_seq.genomic.gdc_realn.bam 8774793417 BAM genomic harmonized CPTAC3 388dbad2-9bbb-45ee-a589-e46d4fbb0b1a 9d5594f42142c427351abd59785e3e3e { 'aliquot_tag': 'ALQ_fc5a6c9b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01687.RNA-Seq.R1_L007.T C3L-01687 PDA RNA-Seq tumor CPT0094630007 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L007_R1_001.fastq.gz 3954237874 FASTQ R1_L007 unaligned CPTAC3 9545cf4f-5b01-43a6-b003-ef20185af5e4 a9d5e104750661c71c0f822e525809b3 { 'aliquot_tag': 'ALQ_fc5a6c9b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01687.RNA-Seq.R2_L007.T C3L-01687 PDA RNA-Seq tumor CPT0094630007 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L007_R2_001.fastq.gz 4265724748 FASTQ R2_L007 unaligned CPTAC3 bad2a3a3-78be-44a8-906a-1572ebf2422c 9fe6d12fa3f7d6f897dec2a8cf78a2da { 'aliquot_tag': 'ALQ_fc5a6c9b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01687.RNA-Seq.genomic.T.hg38 C3L-01687 PDA RNA-Seq tumor CPT0094630007 2d264d56-1c97-446e-b3b8-46ccde4eb2b4.rna_seq.genomic.gdc_realn.bam 8774793417 BAM genomic harmonized CPTAC3 0508ba6b-1018-4eeb-ab86-9c9e7b89dd32 9d5594f42142c427351abd59785e3e3e { 'aliquot_tag': 'ALQ_fc5a6c9b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01687.RNA-Seq.R1_L007.T C3L-01687 PDA RNA-Seq tumor CPT0094630007 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L007_R1_001.fastq.gz 3954237874 FASTQ R1_L007 unaligned CPTAC3 9545cf4f-5b01-43a6-b003-ef20185af5e4 a9d5e104750661c71c0f822e525809b3 { 'aliquot_tag': 'ALQ_fc5a6c9b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01687.RNA-Seq.R2_L007.T C3L-01687 PDA RNA-Seq tumor CPT0094630007 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L007_R2_001.fastq.gz 4265724748 FASTQ R2_L007 unaligned CPTAC3 bad2a3a3-78be-44a8-906a-1572ebf2422c 9fe6d12fa3f7d6f897dec2a8cf78a2da { 'aliquot_tag': 'ALQ_fc5a6c9b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-01687.RNA-Seq.transcriptome.T.hg38 C3L-01687 PDA RNA-Seq tumor CPT0094630007 2d264d56-1c97-446e-b3b8-46ccde4eb2b4.rna_seq.transcriptome.gdc_realn.bam 10172760667 BAM transcriptome harmonized CPTAC3 f4ed9934-7403-4a56-a834-0a23dfedc6ef ff6f9caf637da6998f775fdf24436a3d { 'aliquot_tag': 'ALQ_fc5a6c9b', 'gdc_sample_type': 'Primary Tumor' } C3L-01687.Targeted.T C3L-01687 PDA Targeted Sequencing tumor CPT0094630010_1 CPT0094630010_1.CustomSelection.RP-1303.PDO-18786.bam 6042277368 BAM aligned CPTAC3 8b005314-53d4-4033-9b22-99bf08de8bb4 75ca37707163d3e3c567e55e92c9108a { 'aliquot_tag': 'ALQ_4666a046', 'gdc_sample_type': 'Primary Tumor' } C3L-01687.Targeted.T.hg38 C3L-01687 PDA Targeted Sequencing tumor CPT0094630010_1 8f41faed-4885-470d-999b-4d4944b7eb8b_targetedsequencing_gdc_realn.bam 8588382403 BAM harmonized CPTAC3 8f28ad35-3a3f-4234-9080-b4775bfe3600 2852a8eb6f87bfb5a201dcecc83ca9ac { 'aliquot_tag': 'ALQ_4666a046', 'gdc_sample_type': 'Primary Tumor' } @@ -7988,12 +8645,12 @@ C3L-01689.miRNA-Seq.T C3L-01689 PDA miRNA-Seq tumor CPT0094740007 180828_UNC32-K C3L-01689.miRNA-Seq.T.hg38 C3L-01689 PDA miRNA-Seq tumor CPT0094740007 293a311e-ac24-4afa-a7ad-d5e0b261bd70_mirnaseq_gdc_realn.bam 296343268 BAM harmonized CPTAC3 60a8ea10-52e3-46af-a979-5b312f6752c8 8bc79d0cbda06565a6b4f756f784853f { 'aliquot_tag': 'ALQ_8526632e', 'gdc_sample_type': 'Primary Tumor' } C3L-01689.RNA-Seq.chimeric.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 d1136672-6cd9-4690-a7d5-7b7175d32ec4.rna_seq.chimeric.gdc_realn.bam 56173937 BAM chimeric harmonized CPTAC3 7ba26246-9eda-48ed-9395-1b48443b55e5 b4b83b0514141826dd6092ae5c4664b3 { 'aliquot_tag': 'ALQ_185e1d49', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01689.RNA-Seq.chimeric.T.hg38 C3L-01689 PDA RNA-Seq tumor CPT0094740007 407d3d54-9938-47b5-a9c2-eb8bfa1aa54d.rna_seq.chimeric.gdc_realn.bam 51591775 BAM chimeric harmonized CPTAC3 e02c7c12-09ec-472c-9edc-51771507af9a 5f8671cf8473f3da766d88afbf348db6 { 'aliquot_tag': 'ALQ_8526632e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01689.RNA-Seq.genomic.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 d1136672-6cd9-4690-a7d5-7b7175d32ec4.rna_seq.genomic.gdc_realn.bam 12241655876 BAM genomic harmonized CPTAC3 70411c76-38cf-44d7-bf35-9e1825a1c35c cf81ffc8ebfba4afd3dc1b8f34ab087b { 'aliquot_tag': 'ALQ_185e1d49', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01689.RNA-Seq.genomic.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 d1136672-6cd9-4690-a7d5-7b7175d32ec4.rna_seq.genomic.gdc_realn.bam 12241655876 BAM genomic harmonized CPTAC3 7851b824-ed1c-4d77-95a1-2b723fbd3cdb cf81ffc8ebfba4afd3dc1b8f34ab087b { 'aliquot_tag': 'ALQ_185e1d49', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01689.RNA-Seq.genomic.T.hg38 C3L-01689 PDA RNA-Seq tumor CPT0094740007 407d3d54-9938-47b5-a9c2-eb8bfa1aa54d.rna_seq.genomic.gdc_realn.bam 9680847491 BAM genomic harmonized CPTAC3 9f10c714-81a4-4ea3-8310-85770c84720f 34a40554e2945c6d1affabad56deaa74 { 'aliquot_tag': 'ALQ_8526632e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01689.RNA-Seq.R1_L007.T C3L-01689 PDA RNA-Seq tumor CPT0094740007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R1_001.fastq.gz 4423527277 FASTQ R1_L007 unaligned CPTAC3 c6fa2be8-70e6-4a3b-82a4-911ee2a935c7 54499d4be416ef66178ba2c775e33d78 { 'aliquot_tag': 'ALQ_8526632e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01689.RNA-Seq.R1_L008.A C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R1_001.fastq.gz 4885591906 FASTQ R1_L008 unaligned CPTAC3 2e215877-8133-4956-9365-afcc86b208e6 e842830b60c4b842aa66e50b9376427d { 'aliquot_tag': 'ALQ_185e1d49', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01689.RNA-Seq.R2_L007.T C3L-01689 PDA RNA-Seq tumor CPT0094740007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R2_001.fastq.gz 4577352236 FASTQ R2_L007 unaligned CPTAC3 314c5ece-ac0c-43cb-9cb9-5074c5ddd17f f87675967cee23ae83412a17ed448dfb { 'aliquot_tag': 'ALQ_8526632e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01689.RNA-Seq.R2_L008.A C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R2_001.fastq.gz 5133168728 FASTQ R2_L008 unaligned CPTAC3 dcb43335-d796-4abf-b95e-0519563eba77 e67e79c73b1d85f37c5f6bc9c0823ef3 { 'aliquot_tag': 'ALQ_185e1d49', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01689.RNA-Seq.R1_L007.T C3L-01689 PDA RNA-Seq tumor CPT0094740007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R1_001.fastq.gz 4423527277 FASTQ R1_L007 unaligned CPTAC3 c6fa2be8-70e6-4a3b-82a4-911ee2a935c7 54499d4be416ef66178ba2c775e33d78 { 'aliquot_tag': 'ALQ_8526632e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01689.RNA-Seq.R1_L008.A C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R1_001.fastq.gz 4885591906 FASTQ R1_L008 unaligned CPTAC3 2e215877-8133-4956-9365-afcc86b208e6 e842830b60c4b842aa66e50b9376427d { 'aliquot_tag': 'ALQ_185e1d49', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-01689.RNA-Seq.R2_L007.T C3L-01689 PDA RNA-Seq tumor CPT0094740007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L007_R2_001.fastq.gz 4577352236 FASTQ R2_L007 unaligned CPTAC3 314c5ece-ac0c-43cb-9cb9-5074c5ddd17f f87675967cee23ae83412a17ed448dfb { 'aliquot_tag': 'ALQ_8526632e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-01689.RNA-Seq.R2_L008.A C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 180427_UNC31-K00269_0124_AHTVJ5BBXX_GAGTGG_S1_L008_R2_001.fastq.gz 5133168728 FASTQ R2_L008 unaligned CPTAC3 dcb43335-d796-4abf-b95e-0519563eba77 e67e79c73b1d85f37c5f6bc9c0823ef3 { 'aliquot_tag': 'ALQ_185e1d49', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-01689.RNA-Seq.transcriptome.A.hg38 C3L-01689 PDA RNA-Seq tissue_normal CPT0094760009 d1136672-6cd9-4690-a7d5-7b7175d32ec4.rna_seq.transcriptome.gdc_realn.bam 10923965553 BAM transcriptome harmonized CPTAC3 870a6366-9bcd-4d0e-82b9-fe01900087c1 bf2205782952edcd55e0682a6c43fcb6 { 'aliquot_tag': 'ALQ_185e1d49', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01689.RNA-Seq.transcriptome.T.hg38 C3L-01689 PDA RNA-Seq tumor CPT0094740007 407d3d54-9938-47b5-a9c2-eb8bfa1aa54d.rna_seq.transcriptome.gdc_realn.bam 11964216053 BAM transcriptome harmonized CPTAC3 069c257d-c29a-416b-9705-79d1b31b8946 3cfd0cf16d54a2ac0ac903c9df01569b { 'aliquot_tag': 'ALQ_8526632e', 'gdc_sample_type': 'Primary Tumor' } C3L-01689.Targeted.T C3L-01689 PDA Targeted Sequencing tumor CPT0094740010_1 CPT0094740010_1.CustomSelection.RP-1303.PDO-18786.bam 4439399359 BAM aligned CPTAC3 70c010c1-3ea8-428e-9e88-afb515b48312 03ab59b65576a0388510c0682f97ecee { 'aliquot_tag': 'ALQ_4f6b9e56', 'gdc_sample_type': 'Primary Tumor' } @@ -8008,22 +8665,33 @@ C3L-01689.WXS.N C3L-01689 PDA WXS blood_normal CPT0094770002 CPT0094770002.Whole C3L-01689.WXS.N.hg38 C3L-01689 PDA WXS blood_normal CPT0094770002 46e8ae07-a169-4f32-b287-765baebdb791_wxs_gdc_realn.bam 64223755589 BAM harmonized CPTAC3 642cddf7-2f67-4d03-9635-06c554458f3c fa235e4d741a8bb10d3a65b5f8af2caf { 'aliquot_tag': 'ALQ_b2eced71', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01689.WXS.T C3L-01689 PDA WXS tumor CPT0094740010_1 CPT0094740010_1.WholeExome.RP-1303.bam 63058697539 BAM aligned CPTAC3 00bf0247-9154-461a-ba35-264fb2cb6687 0b346609719287308266ff0043185737 { 'aliquot_tag': 'ALQ_4f6b9e56', 'gdc_sample_type': 'Primary Tumor' } C3L-01689.WXS.T.hg38 C3L-01689 PDA WXS tumor CPT0094740010_1 70a35058-7366-48fe-9d20-279e5067a318_wxs_gdc_realn.bam 86331664244 BAM harmonized CPTAC3 84b33e50-751c-41df-a998-e13d2d37eed0 1cb7b06936f48ed62bea4726d3ce80a7 { 'aliquot_tag': 'ALQ_4f6b9e56', 'gdc_sample_type': 'Primary Tumor' } +C3L-01694.MethArray.Green.Tpb C3L-01694 AML Methylation Array tumor_peripheral_blood CPT0340290002 205987770157_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 48156c23-8317-497f-a605-f8a66b6c22bc d9757abe7b3856c763fcaf91becb14f9 { 'aliquot_tag': 'ALQ_bd6cfa4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01694.MethArray.Red.Tpb C3L-01694 AML Methylation Array tumor_peripheral_blood CPT0340290002 205987770157_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 dbffa38d-f416-45c3-9131-abedc39db0e9 696f71e78308dfa0a99cf160d51f8f5f { 'aliquot_tag': 'ALQ_bd6cfa4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01694.miRNA-Seq.Tpb C3L-01694 AML miRNA-Seq tumor_peripheral_blood CPT0340300002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATCACG_S2_L001_R1_001.unaln.bam 189361792 BAM unaligned CPTAC3 2155728d-fbac-4451-9b0b-107fa7725bb6 ab8f08c58a583b408187ad638697e25d { 'aliquot_tag': 'ALQ_cd9a7e70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-01694.RNA-Seq.R1_L007.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R1_001.fastq.gz 3641677214 FASTQ R1_L007 unaligned CPTAC3 c23e84a2-04e9-43f2-985b-066d931b4eb6 9c80e939fd70eda7d92249e404905283 { 'aliquot_tag': 'ALQ_cd9a7e70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-01694.RNA-Seq.R2_L007.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R2_001.fastq.gz 3955993600 FASTQ R2_L007 unaligned CPTAC3 9495c32c-577f-4f2d-b673-9a76a4830300 8f3928807d30f4e34f3c5c3aa09818e8 { 'aliquot_tag': 'ALQ_cd9a7e70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01694.miRNA-Seq.Tpb.hg38 C3L-01694 AML miRNA-Seq tumor_peripheral_blood CPT0340300002 8d58eaa9-17bb-49a0-a318-79716ba9e98f_mirnaseq_gdc_realn.bam 208032669 BAM harmonized CPTAC3 87984535-3a20-458a-a4d0-64320baac44a 6a601eeace0214fa8f305da9ca11f8a8 { 'aliquot_tag': 'ALQ_cd9a7e70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01694.RNA-Seq.chimeric.Tpb.hg38 C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 62bced93-0342-4bfa-a0bc-084ef95f73af.rna_seq.chimeric.gdc_realn.bam 768880379 BAM chimeric harmonized CPTAC3 0944b400-af0f-4325-844b-cf3428029bf6 48ff1836d4fa88d9c00a87a5c82167e5 { 'aliquot_tag': 'ALQ_cd9a7e70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01694.RNA-Seq.genomic.Tpb.hg38 C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 62bced93-0342-4bfa-a0bc-084ef95f73af.rna_seq.genomic.gdc_realn.bam 7955895641 BAM genomic harmonized CPTAC3 02e9515d-6f20-4bff-a425-f93ec92c05c8 f982bc482c750aac19707d3317cf34ce { 'aliquot_tag': 'ALQ_cd9a7e70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01694.RNA-Seq.R1_L007.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R1_001.fastq.gz 3641677214 FASTQ R1_L007 unaligned CPTAC3 c23e84a2-04e9-43f2-985b-066d931b4eb6 9c80e939fd70eda7d92249e404905283 { 'aliquot_tag': 'ALQ_cd9a7e70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L007' } +C3L-01694.RNA-Seq.R2_L007.Tpb C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGTAAGT-ACTCTATG_S25_L007_R2_001.fastq.gz 3955993600 FASTQ R2_L007 unaligned CPTAC3 9495c32c-577f-4f2d-b673-9a76a4830300 8f3928807d30f4e34f3c5c3aa09818e8 { 'aliquot_tag': 'ALQ_cd9a7e70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L007' } +C3L-01694.RNA-Seq.transcriptome.Tpb.hg38 C3L-01694 AML RNA-Seq tumor_peripheral_blood CPT0340300002 62bced93-0342-4bfa-a0bc-084ef95f73af.rna_seq.transcriptome.gdc_realn.bam 5977978782 BAM transcriptome harmonized CPTAC3 e899a5f8-a05a-4649-af17-a515e6707883 58ab4b032c5659eab627a89a462f66eb { 'aliquot_tag': 'ALQ_cd9a7e70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01694.WGS.Nbc C3L-01694 AML WGS buccal_normal CPT0340260002 CPT0340260002.WholeGenome.RP-2158.bam 45058029150 BAM aligned CPTAC3 d23ef466-36f2-485c-8ca0-a5c8ac78628e a324d7b30f0532a3bd55f840fe7caa86 { 'aliquot_tag': 'ALQ_89865875', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01694.WGS.Nbc.hg38 C3L-01694 AML WGS buccal_normal CPT0340260002 5d684f4c-80fc-44b7-926a-af49366523b2_wgs_gdc_realn.bam 136284225494 BAM harmonized CPTAC3 f0e9d729-028a-44d1-938a-8c48e13b96da 8cef655714b2ca92c8f7c8276f347a0d { 'aliquot_tag': 'ALQ_89865875', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01694.WGS.Tpb C3L-01694 AML WGS tumor_peripheral_blood CPT0340290002 CPT0340290002.WholeGenome.RP-2158.bam 45406211217 BAM aligned CPTAC3 fd0bf4c3-3cdd-466e-881b-892b1f699a21 6be1481d176cd14b000b8d46be88ded7 { 'aliquot_tag': 'ALQ_bd6cfa4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01694.WGS.Tpb.hg38 C3L-01694 AML WGS tumor_peripheral_blood CPT0340290002 6df0b8f4-02c9-4275-a8d7-bef8a26c1a00_wgs_gdc_realn.bam 138048227737 BAM harmonized CPTAC3 98a43f31-aa70-4a90-aad4-4f12a5fad7ab 1793e87c5204e5f42dc7d24818cbf6b8 { 'aliquot_tag': 'ALQ_bd6cfa4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01694.WXS.Nbc C3L-01694 AML WXS buccal_normal CPT0340260002 CPT0340260002.WholeExome.RP-1303.bam 26013305775 BAM aligned CPTAC3 573d421a-41ab-4cea-a4b7-867f77741f5f 8d2b1d5cc72d4c848557457a6d70fc53 { 'aliquot_tag': 'ALQ_89865875', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-01694.WXS.Nbc.hg38 C3L-01694 AML WXS buccal_normal CPT0340260002 5d684f4c-80fc-44b7-926a-af49366523b2_wxs_gdc_realn.bam 35293704480 BAM harmonized CPTAC3 07fdceb1-5120-4aa7-b3ff-6f3e17d6fa7f 578de5efc0c76e55f2a7e3e50d0dc88e { 'aliquot_tag': 'ALQ_89865875', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01694.WXS.Tpb C3L-01694 AML WXS tumor_peripheral_blood CPT0340290002 CPT0340290002.WholeExome.RP-1303.bam 31286388274 BAM aligned CPTAC3 c56f92f5-a1de-4bd8-a3f6-eeb898485791 38835ff793931fea3c5bbf45665ab71a { 'aliquot_tag': 'ALQ_bd6cfa4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-01694.WXS.Tpb.hg38 C3L-01694 AML WXS tumor_peripheral_blood CPT0340290002 6df0b8f4-02c9-4275-a8d7-bef8a26c1a00_wxs_gdc_realn.bam 43163559785 BAM harmonized CPTAC3 236a0476-77cc-4842-b611-7d8ae76256db d0e980372f3d5e9506b37d35126e5a6b { 'aliquot_tag': 'ALQ_bd6cfa4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-01696.MethArray.Green.Tbm C3L-01696 AML Methylation Array tumor_bone_marrow CPT0166290002 203561620054_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 090922bd-5325-4c89-9a7c-3b5fac7b9ca9 93eeadd0c007c600927a318eeb2d19ec { 'aliquot_tag': 'ALQ_4d5d565', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01696.MethArray.Red.Tbm C3L-01696 AML Methylation Array tumor_bone_marrow CPT0166290002 203561620054_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 409f54a9-1c4c-4fb5-b1d1-923d91aa7a6a a71dc0d86bd67b27f4a4f400b7bf34dc { 'aliquot_tag': 'ALQ_4d5d565', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01696.miRNA-Seq.Tbm C3L-01696 AML miRNA-Seq tumor_bone_marrow CPT0166320002 190508_UNC31-K00269_0215_BH7FYKBBXY_GGTAGC_S24_L002_R1_001.unaln.bam 145264302 BAM unaligned CPTAC3 c16d36d4-f969-441d-b156-abe0c1479113 bd20c2533cc6389772efecc1a214f1f3 { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01696.miRNA-Seq.Tbm.hg38 C3L-01696 AML miRNA-Seq tumor_bone_marrow CPT0166320002 a4cc8781-7dc6-44ba-b92e-cc5b45c46036_mirnaseq_gdc_realn.bam 159904342 BAM harmonized CPTAC3 2c8a855a-94b5-462d-846a-fa90dbe4478b b36ee77505072204afbe8a7d1a6a8903 { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01696.RNA-Seq.chimeric.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 efcb3566-22ef-4ca8-bd1d-349c10b1ac63.rna_seq.chimeric.gdc_realn.bam 32668679 BAM chimeric harmonized CPTAC3 e8d479d1-1461-40ca-938d-829771f1725d 77172c9eeac7c9f5e10f8ae1ff190884 { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01696.RNA-Seq.genomic.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 efcb3566-22ef-4ca8-bd1d-349c10b1ac63.rna_seq.genomic.gdc_realn.bam 8651304951 BAM genomic harmonized CPTAC3 288ccc52-40f6-468c-8791-fd1ccfb6319b 103de519cf0f613b26955c69b84a517f { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01696.RNA-Seq.R1_L007.Tbm C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGAGGCC-GTTAATTG_S42_L007_R1_001.fastq.gz 4068452902 FASTQ R1_L007 unaligned CPTAC3 96152e05-9a90-41d0-8aad-96fcd8a9abad 769e93bf91b3afcf3bf9e09dfc33e139 { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01696.RNA-Seq.R2_L007.Tbm C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGAGGCC-GTTAATTG_S42_L007_R2_001.fastq.gz 4695883551 FASTQ R2_L007 unaligned CPTAC3 52f743ca-17e2-4e87-8e66-69f9224c4139 a69be6ef52b83a21f5f9b8c793d176a6 { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01696.RNA-Seq.transcriptome.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 efcb3566-22ef-4ca8-bd1d-349c10b1ac63.rna_seq.transcriptome.gdc_realn.bam 8934715990 BAM transcriptome harmonized CPTAC3 ceda219d-d973-4589-8c09-9e5cd7e86f67 1df1e4ad7f08d9f3144d9264e02a81f9 { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01696.RNA-Seq.chimeric.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 2f6a264e-8491-43a9-8f6d-f88a21c64253.rna_seq.chimeric.gdc_realn.bam 32661277 BAM chimeric harmonized CPTAC3 c15dd4fe-c5f2-48a8-b116-cf1a0e10d00c df30cdd26d0d4382845983dd185fc9fd { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01696.RNA-Seq.genomic.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 2f6a264e-8491-43a9-8f6d-f88a21c64253.rna_seq.genomic.gdc_realn.bam 8651452145 BAM genomic harmonized CPTAC3 53abe101-df2d-4ec6-8b55-8a6ded923d48 b44588024015e5e4d5eb3be601e7cae6 { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01696.RNA-Seq.R1_L007.Tbm C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGAGGCC-GTTAATTG_S42_L007_R1_001.fastq.gz 4068452902 FASTQ R1_L007 unaligned CPTAC3 96152e05-9a90-41d0-8aad-96fcd8a9abad 769e93bf91b3afcf3bf9e09dfc33e139 { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-01696.RNA-Seq.R2_L007.Tbm C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 190522_UNC31-K00269_0217_AH7F5MBBXY_ATGAGGCC-GTTAATTG_S42_L007_R2_001.fastq.gz 4695883551 FASTQ R2_L007 unaligned CPTAC3 52f743ca-17e2-4e87-8e66-69f9224c4139 a69be6ef52b83a21f5f9b8c793d176a6 { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-01696.RNA-Seq.transcriptome.Tbm.hg38 C3L-01696 AML RNA-Seq tumor_bone_marrow CPT0166320002 2f6a264e-8491-43a9-8f6d-f88a21c64253.rna_seq.transcriptome.gdc_realn.bam 10137569179 BAM transcriptome harmonized CPTAC3 38d0ace6-95fb-489a-9d93-eb5450ce6f7d ef53d104d6cbed36b7651e20bc6c0a7f { 'aliquot_tag': 'ALQ_b85937d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01696.WGS.Nbc C3L-01696 AML WGS buccal_normal CPT0166350003_1 CPT0166350003_1.WholeGenome.RP-1303.bam 69838458599 BAM aligned CPTAC3 a4410206-057d-44ce-9819-37f992dfbdfb 7250d270ad5940fcedf44e80eac90df6 { 'aliquot_tag': 'ALQ_c9dfeeef', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01696.WGS.Nbc C3L-01696 AML WGS buccal_normal CPT0166350003 CPT0166350003.WholeGenome.RP-1303.bam 21981937874 BAM aligned CPTAC3 de97474c-7074-43bd-a1f8-e98800f27ada dca8f62c04ec10e9985a6ef1fe3cc710 { 'aliquot_tag': 'ALQ_7d7edb57', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01696.WGS.Nbc.hg38 C3L-01696 AML WGS buccal_normal CPT0166350003 a1ab108e-f673-4cce-862e-77fa87d4a4f5_wgs_gdc_realn.bam 30140254960 BAM harmonized CPTAC3 19666272-672e-45f8-98e1-10baefb2e231 80ff1d5bae4c11a6f21909f953dfded1 { 'aliquot_tag': 'ALQ_7d7edb57', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01696.WGS.Tbm C3L-01696 AML WGS tumor_bone_marrow CPT0166290002 CPT0166290002.WholeGenome.RP-1303.bam 84446246342 BAM aligned CPTAC3 7c30eb6a-4f4c-40fa-8565-27f50456a49c c9e6d9ca88f0cf06605b35a2e5cf0b05 { 'aliquot_tag': 'ALQ_4d5d565', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -8036,11 +8704,11 @@ C3L-01700.MethArray.Green.Tbm C3L-01700 AML Methylation Array tumor_bone_marrow C3L-01700.MethArray.Red.Tbm C3L-01700 AML Methylation Array tumor_bone_marrow CPT0200690002 203561450106_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 f6eec611-fdfb-4b26-a30c-13ec6db7ebb2 119ba3868fb765f144df6bc353322902 { 'aliquot_tag': 'ALQ_376970b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01700.miRNA-Seq.Tbm C3L-01700 AML miRNA-Seq tumor_bone_marrow CPT0200700002 190508_UNC31-K00269_0215_BH7FYKBBXY_ATTCCT_S27_L002_R1_001.unaln.bam 229207078 BAM unaligned CPTAC3 134d1fa9-4d15-45fa-9bf2-eb795f83e933 786a1a82a5a53b8d41686befbd638c4a { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01700.miRNA-Seq.Tbm.hg38 C3L-01700 AML miRNA-Seq tumor_bone_marrow CPT0200700002 665d766e-2604-4434-b02f-d8895d315e53_mirnaseq_gdc_realn.bam 252873972 BAM harmonized CPTAC3 796254fa-8bbd-4214-a151-62dc2acb24ef 524aca3a29cc829ec944a5fcb65771aa { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01700.RNA-Seq.chimeric.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 793c48a5-fcb3-4dcd-b164-008d2138a7c3.rna_seq.chimeric.gdc_realn.bam 31817843 BAM chimeric harmonized CPTAC3 2fd373e7-1f09-4808-aed5-c23b2427a424 608ae3a55c7fcdeff967ffbe898917d0 { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01700.RNA-Seq.genomic.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 793c48a5-fcb3-4dcd-b164-008d2138a7c3.rna_seq.genomic.gdc_realn.bam 7754388624 BAM genomic harmonized CPTAC3 dec46a91-16c9-4184-9163-81bcd344ae28 741e8ca7d807e3c6326ee207a1fbcc31 { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01700.RNA-Seq.R1_L006.Tbm C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 190426_UNC32-K00270_0167_AH7CK7BBXY_CTTGGTAT-CCAAGTCC_S21_L006_R1_001.fastq.gz 3805045729 FASTQ R1_L006 unaligned CPTAC3 f456c6d9-3147-4e10-ad0a-c4125bc6a38b abfe9184fb20c422610fa0ec7f60d632 { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01700.RNA-Seq.R2_L006.Tbm C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 190426_UNC32-K00270_0167_AH7CK7BBXY_CTTGGTAT-CCAAGTCC_S21_L006_R2_001.fastq.gz 4349536713 FASTQ R2_L006 unaligned CPTAC3 80547ec7-4f9f-45e6-baa4-36be1dbd9965 c41cb44d081fbb446aab8e25c74bba45 { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-01700.RNA-Seq.transcriptome.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 793c48a5-fcb3-4dcd-b164-008d2138a7c3.rna_seq.transcriptome.gdc_realn.bam 8034259274 BAM transcriptome harmonized CPTAC3 3063d99d-036e-4745-aaf9-8c5f7fb7ecf3 bdc13c747dea14ca899d769ddd9477c3 { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01700.RNA-Seq.chimeric.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 373b3aea-bb09-4a29-a196-491ef0df8682.rna_seq.chimeric.gdc_realn.bam 31799306 BAM chimeric harmonized CPTAC3 25c2a4b6-2d3f-47cc-86a7-4c047a428774 50ab8e5039334a4d99e4431c0f5915c9 { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01700.RNA-Seq.genomic.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 373b3aea-bb09-4a29-a196-491ef0df8682.rna_seq.genomic.gdc_realn.bam 7755034841 BAM genomic harmonized CPTAC3 9a2d45b9-e371-4407-8b31-63c684b65cd4 84a8580d8b265ce715928ba3c89525c7 { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-01700.RNA-Seq.R1_L006.Tbm C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 190426_UNC32-K00270_0167_AH7CK7BBXY_CTTGGTAT-CCAAGTCC_S21_L006_R1_001.fastq.gz 3805045729 FASTQ R1_L006 unaligned CPTAC3 f456c6d9-3147-4e10-ad0a-c4125bc6a38b abfe9184fb20c422610fa0ec7f60d632 { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-01700.RNA-Seq.R2_L006.Tbm C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 190426_UNC32-K00270_0167_AH7CK7BBXY_CTTGGTAT-CCAAGTCC_S21_L006_R2_001.fastq.gz 4349536713 FASTQ R2_L006 unaligned CPTAC3 80547ec7-4f9f-45e6-baa4-36be1dbd9965 c41cb44d081fbb446aab8e25c74bba45 { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-01700.RNA-Seq.transcriptome.Tbm.hg38 C3L-01700 AML RNA-Seq tumor_bone_marrow CPT0200700002 373b3aea-bb09-4a29-a196-491ef0df8682.rna_seq.transcriptome.gdc_realn.bam 9106457661 BAM transcriptome harmonized CPTAC3 77c631d1-8a00-4b06-aad6-e8569f69ff14 0763389605c76e0975b55dc47ef174c6 { 'aliquot_tag': 'ALQ_c53a26df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-01700.WGS.Nbc C3L-01700 AML WGS buccal_normal CPT0200790002 CPT0200790002.WholeGenome.RP-1303.bam 80790915888 BAM aligned CPTAC3 2612ec86-28e4-4395-ae9d-39a5c2a3af4c d656e4ceb20bc268d367593638d864ff { 'aliquot_tag': 'ALQ_c82a44ae', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01700.WGS.Nbc.hg38 C3L-01700 AML WGS buccal_normal CPT0200790002 7516f386-c88b-4bb7-8387-3973bf607a6b_wgs_gdc_realn.bam 117965029474 BAM harmonized CPTAC3 c9ca3855-56ab-43b4-94ba-b9be6a3bba97 d2953f95329a9d4392ee6da729b98eb8 { 'aliquot_tag': 'ALQ_c82a44ae', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-01700.WGS.Tbm C3L-01700 AML WGS tumor_bone_marrow CPT0200690002 CPT0200690002.WholeGenome.RP-1303.bam 60445639298 BAM aligned CPTAC3 1955550f-7238-4c76-ae95-4d55ccbeeaaa 9767b4f424f6ade993cb458f1ef30357 { 'aliquot_tag': 'ALQ_376970b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -8057,11 +8725,11 @@ C3L-01702.ADD_412fa909.WXS.T C3L-01702 PDA WXS tumor CPT0094830010 CPT0094830010 C3L-01702.ADD_412fa909.WXS.T.hg38 C3L-01702 PDA WXS tumor CPT0094830010 55cb86b0-a9bf-4ebe-a6e1-4980151e80cf_wxs_gdc_realn.bam 39992771737 BAM harmonized CPTAC3 72ae9b49-9baa-4db9-a3be-46eebb8e3589 fb452736937f3b109c7137b6899dc5af { 'aliquot_tag': 'ADD_412fa909', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional DNA for PDA Deep Sequencing' } C3L-01702.miRNA-Seq.T C3L-01702 PDA miRNA-Seq tumor CPT0094830007 180828_UNC32-K00270_0112_AHWTLNBBXX_GTAGAG_S9_L006_R1_001.unaln.bam 284932613 BAM unaligned CPTAC3 f074102a-9da6-4f33-b66e-f8649ab346ce ff50a265da27e73f5175a9e10f7fc64a { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor' } C3L-01702.miRNA-Seq.T.hg38 C3L-01702 PDA miRNA-Seq tumor CPT0094830007 1353f095-3b61-4410-a77f-43f4b366bc82_mirnaseq_gdc_realn.bam 311898874 BAM harmonized CPTAC3 77c2bae3-6a6c-455f-8c9e-f26b0b8a8ab5 48bd491445ad0f17eb4b60c3920d34b2 { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01702.RNA-Seq.chimeric.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 90f3f026-abd6-4464-87dc-0daa7ef1ac4e.rna_seq.chimeric.gdc_realn.bam 114389486 BAM chimeric harmonized CPTAC3 12dbde8f-97e9-4279-bc82-077e6ff7dfaa e05a9e7e4572f62d052f9e9023022f17 { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01702.RNA-Seq.genomic.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 90f3f026-abd6-4464-87dc-0daa7ef1ac4e.rna_seq.genomic.gdc_realn.bam 9541160140 BAM genomic harmonized CPTAC3 a949882f-65c2-40e4-a9c9-33c0baa11e44 98477e7cbe8cf6b7344fa7e3b058c5fe { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01702.RNA-Seq.R1_L006.T C3L-01702 PDA RNA-Seq tumor CPT0094830007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTCCGC_S22_L006_R1_001.fastq.gz 4259382174 FASTQ R1_L006 unaligned CPTAC3 a8bbcd02-1dbd-4841-9abf-147a007025ab 257f300b83231fe9b1f75ec0d8aa9bd7 { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01702.RNA-Seq.R2_L006.T C3L-01702 PDA RNA-Seq tumor CPT0094830007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTCCGC_S22_L006_R2_001.fastq.gz 4636593997 FASTQ R2_L006 unaligned CPTAC3 2a6ed8fb-e80c-497b-aa15-fff187d6e3a7 bf8c20e6a4b4a5a52665fb86b7980b0d { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01702.RNA-Seq.transcriptome.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 90f3f026-abd6-4464-87dc-0daa7ef1ac4e.rna_seq.transcriptome.gdc_realn.bam 9048758820 BAM transcriptome harmonized CPTAC3 928c4d6e-85d0-4526-938b-eff1f8138259 1fad4312220a0b9fb036fcb585816272 { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01702.RNA-Seq.chimeric.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 7913116f-45b1-4870-89c1-0898876172d7.rna_seq.chimeric.gdc_realn.bam 114389081 BAM chimeric harmonized CPTAC3 66d1cb7a-5f92-4e45-83ae-20f0bf2c6ca8 295233efc141bf685ce7338b579f3287 { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01702.RNA-Seq.genomic.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 7913116f-45b1-4870-89c1-0898876172d7.rna_seq.genomic.gdc_realn.bam 9542431073 BAM genomic harmonized CPTAC3 cff79f85-0bdc-4a14-886d-b0f3b48156a6 8174110d2f130d943e0d4cd0b8a2bf45 { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01702.RNA-Seq.R1_L006.T C3L-01702 PDA RNA-Seq tumor CPT0094830007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTCCGC_S22_L006_R1_001.fastq.gz 4259382174 FASTQ R1_L006 unaligned CPTAC3 a8bbcd02-1dbd-4841-9abf-147a007025ab 257f300b83231fe9b1f75ec0d8aa9bd7 { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01702.RNA-Seq.R2_L006.T C3L-01702 PDA RNA-Seq tumor CPT0094830007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTCCGC_S22_L006_R2_001.fastq.gz 4636593997 FASTQ R2_L006 unaligned CPTAC3 2a6ed8fb-e80c-497b-aa15-fff187d6e3a7 bf8c20e6a4b4a5a52665fb86b7980b0d { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01702.RNA-Seq.transcriptome.T.hg38 C3L-01702 PDA RNA-Seq tumor CPT0094830007 7913116f-45b1-4870-89c1-0898876172d7.rna_seq.transcriptome.gdc_realn.bam 10224696208 BAM transcriptome harmonized CPTAC3 7ac0abb1-d731-42f9-a6f8-337ca8a75ce0 2f2bfa21582175b3b77f50e7f856a06f { 'aliquot_tag': 'ALQ_c6500deb', 'gdc_sample_type': 'Primary Tumor' } C3L-01702.Targeted.T C3L-01702 PDA Targeted Sequencing tumor CPT0094830010_1 CPT0094830010_1.CustomSelection.RP-1303.PDO-18786.bam 5580823428 BAM aligned CPTAC3 1be815f0-15eb-414a-adcf-81aaed2aa4cf f667b424e85b355fecb907b88526ce20 { 'aliquot_tag': 'ALQ_53ecb274', 'gdc_sample_type': 'Primary Tumor' } C3L-01702.Targeted.T.hg38 C3L-01702 PDA Targeted Sequencing tumor CPT0094830010_1 76607a42-17bf-4fe3-b086-c68c0b5f857b_targetedsequencing_gdc_realn.bam 7641156919 BAM harmonized CPTAC3 62f9f32d-fbdb-4d3c-8dce-77d92ac76b7e 9150a76b1755729ab3265178bc6d4469 { 'aliquot_tag': 'ALQ_53ecb274', 'gdc_sample_type': 'Primary Tumor' } C3L-01702.WGS.N C3L-01702 PDA WGS blood_normal CPT0094880007 CPT0094880007.WholeGenome.RP-1303.bam 66603108727 BAM aligned CPTAC3 0a8e9af3-adc6-478f-bc4b-4398e6ad20fb 123e112a505af678905f81b6f2f73504 { 'aliquot_tag': 'ALQ_b1803cfa', 'gdc_sample_type': 'Blood Derived Normal' } @@ -8084,12 +8752,12 @@ C3L-01703.miRNA-Seq.T C3L-01703 PDA miRNA-Seq tumor CPT0094940007 180828_UNC32-K C3L-01703.miRNA-Seq.T.hg38 C3L-01703 PDA miRNA-Seq tumor CPT0094940007 759c4173-56fc-4b7f-b390-9e1e3bef9bac_mirnaseq_gdc_realn.bam 284109858 BAM harmonized CPTAC3 7d697178-c538-4198-8df0-5a10262a5ca6 782762999f57cb9f28c696d254733a70 { 'aliquot_tag': 'ALQ_bf2c025e', 'gdc_sample_type': 'Primary Tumor' } C3L-01703.RNA-Seq.chimeric.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 b719127d-1579-4500-ae6c-2f87319fb0cf.rna_seq.chimeric.gdc_realn.bam 159451161 BAM chimeric harmonized CPTAC3 2c8f346b-e1a9-40b5-a9d6-d39620b4c087 4897599effd3aac89f23755033c5a510 { 'aliquot_tag': 'ALQ_55534caf', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01703.RNA-Seq.chimeric.T.hg38 C3L-01703 PDA RNA-Seq tumor CPT0094940007 6d62ff2c-68bb-4ba1-981c-b2af6f962a5f.rna_seq.chimeric.gdc_realn.bam 43518699 BAM chimeric harmonized CPTAC3 7ee463b4-d71b-4f05-a883-335cb02ffa89 e9171fd359886ad568a51b3115a1caea { 'aliquot_tag': 'ALQ_bf2c025e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01703.RNA-Seq.genomic.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 b719127d-1579-4500-ae6c-2f87319fb0cf.rna_seq.genomic.gdc_realn.bam 8063932648 BAM genomic harmonized CPTAC3 8438058a-71e4-4697-8299-bf231693db69 8acc823938075a45340e5b898c09ebe5 { 'aliquot_tag': 'ALQ_55534caf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01703.RNA-Seq.genomic.T.hg38 C3L-01703 PDA RNA-Seq tumor CPT0094940007 6d62ff2c-68bb-4ba1-981c-b2af6f962a5f.rna_seq.genomic.gdc_realn.bam 9166205172 BAM genomic harmonized CPTAC3 255b7c6c-6930-4986-afbf-61e1737c37e8 c8438503dbeb684057b8edfa3aa93320 { 'aliquot_tag': 'ALQ_bf2c025e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01703.RNA-Seq.R1_L006.A C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L006_R1_001.fastq.gz 3645287458 FASTQ R1_L006 unaligned CPTAC3 be348100-73f3-4d89-99f1-2776e58503ef 16b1a0aabb120cdaeb27cee49e2756d2 { 'aliquot_tag': 'ALQ_55534caf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01703.RNA-Seq.R1_L006.T C3L-01703 PDA RNA-Seq tumor CPT0094940007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGAAA_S21_L006_R1_001.fastq.gz 3842278146 FASTQ R1_L006 unaligned CPTAC3 007cdbeb-bf0e-4fd4-9474-6946c1b1c757 69e8d6edd5a68f79325fbe5e3ce579af { 'aliquot_tag': 'ALQ_bf2c025e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01703.RNA-Seq.R2_L006.A C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L006_R2_001.fastq.gz 4079220631 FASTQ R2_L006 unaligned CPTAC3 b7dd80aa-f652-4fad-a6de-425cebcd7616 e6aee5b5200dc63cc98f7f9cbadcb3f6 { 'aliquot_tag': 'ALQ_55534caf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01703.RNA-Seq.R2_L006.T C3L-01703 PDA RNA-Seq tumor CPT0094940007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGAAA_S21_L006_R2_001.fastq.gz 3983446937 FASTQ R2_L006 unaligned CPTAC3 bc7fc91d-9d25-466f-9b13-3d875f3c0592 e2418050057230c1759525b1b5ca69b4 { 'aliquot_tag': 'ALQ_bf2c025e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01703.RNA-Seq.genomic.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 b719127d-1579-4500-ae6c-2f87319fb0cf.rna_seq.genomic.gdc_realn.bam 8063932648 BAM genomic harmonized CPTAC3 499310fd-4883-4546-9233-d357c8a6fcc2 8acc823938075a45340e5b898c09ebe5 { 'aliquot_tag': 'ALQ_55534caf', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01703.RNA-Seq.genomic.T.hg38 C3L-01703 PDA RNA-Seq tumor CPT0094940007 6d62ff2c-68bb-4ba1-981c-b2af6f962a5f.rna_seq.genomic.gdc_realn.bam 9166205172 BAM genomic harmonized CPTAC3 9e585e5e-33f4-4c83-aff5-cc45b6250bc3 c8438503dbeb684057b8edfa3aa93320 { 'aliquot_tag': 'ALQ_bf2c025e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01703.RNA-Seq.R1_L006.A C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L006_R1_001.fastq.gz 3645287458 FASTQ R1_L006 unaligned CPTAC3 be348100-73f3-4d89-99f1-2776e58503ef 16b1a0aabb120cdaeb27cee49e2756d2 { 'aliquot_tag': 'ALQ_55534caf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-01703.RNA-Seq.R1_L006.T C3L-01703 PDA RNA-Seq tumor CPT0094940007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGAAA_S21_L006_R1_001.fastq.gz 3842278146 FASTQ R1_L006 unaligned CPTAC3 007cdbeb-bf0e-4fd4-9474-6946c1b1c757 69e8d6edd5a68f79325fbe5e3ce579af { 'aliquot_tag': 'ALQ_bf2c025e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01703.RNA-Seq.R2_L006.A C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 180516_UNC31-K00269_0129_AHTWLFBBXX_CTTGTA_S4_L006_R2_001.fastq.gz 4079220631 FASTQ R2_L006 unaligned CPTAC3 b7dd80aa-f652-4fad-a6de-425cebcd7616 e6aee5b5200dc63cc98f7f9cbadcb3f6 { 'aliquot_tag': 'ALQ_55534caf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-01703.RNA-Seq.R2_L006.T C3L-01703 PDA RNA-Seq tumor CPT0094940007 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGAAA_S21_L006_R2_001.fastq.gz 3983446937 FASTQ R2_L006 unaligned CPTAC3 bc7fc91d-9d25-466f-9b13-3d875f3c0592 e2418050057230c1759525b1b5ca69b4 { 'aliquot_tag': 'ALQ_bf2c025e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-01703.RNA-Seq.transcriptome.A.hg38 C3L-01703 PDA RNA-Seq tissue_normal CPT0094960008 b719127d-1579-4500-ae6c-2f87319fb0cf.rna_seq.transcriptome.gdc_realn.bam 9517166534 BAM transcriptome harmonized CPTAC3 50863830-af99-4048-97b8-219ec783969d f40046c49a33eff92ce3a12c6c03b4b8 { 'aliquot_tag': 'ALQ_55534caf', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01703.RNA-Seq.transcriptome.T.hg38 C3L-01703 PDA RNA-Seq tumor CPT0094940007 6d62ff2c-68bb-4ba1-981c-b2af6f962a5f.rna_seq.transcriptome.gdc_realn.bam 10122856775 BAM transcriptome harmonized CPTAC3 4eb62ba1-7294-4596-b1ea-f05e73fb522b a08a05e76e0edf5ef81ceaaf03be797d { 'aliquot_tag': 'ALQ_bf2c025e', 'gdc_sample_type': 'Primary Tumor' } C3L-01703.Targeted.T C3L-01703 PDA Targeted Sequencing tumor CPT0094940010_1 CPT0094940010_1.CustomSelection.RP-1303.PDO-18786.bam 4809621426 BAM aligned CPTAC3 7468a6f6-9521-4af0-8608-c32a74e0984f 380776795bbaef6d8839b6e2a35b560b { 'aliquot_tag': 'ALQ_5ae18c64', 'gdc_sample_type': 'Primary Tumor' } @@ -8106,13 +8774,16 @@ C3L-01729.MethArray.Green.T C3L-01729 UCEC Methylation Array tumor CPT0127610006 C3L-01729.MethArray.Red.T C3L-01729 UCEC Methylation Array tumor CPT0127610006 203219650157_R01C01_Red.idat 13676221 IDAT Red NA CPTAC3 57da63e9-15ac-44bd-aa02-6698acc66fc2 617931fbe729ae9bce59a69274c75a9a { 'aliquot_tag': 'ALQ_8a641de5', 'gdc_sample_type': 'Primary Tumor' } C3L-01729.miRNA-Seq.T C3L-01729 UCEC miRNA-Seq tumor CPT0127610009 181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 287627244 BAM unaligned CPTAC3 08841f34-39ae-453f-8da5-4081186260ba 2eaf9fbdcf96058063da858998062610 { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor' } C3L-01729.miRNA-Seq.T.hg38 C3L-01729 UCEC miRNA-Seq tumor CPT0127610009 f631e862-5911-4a72-8e3d-9a396b5845ea_mirnaseq_gdc_realn.bam 322114732 BAM harmonized CPTAC3 311deff7-3564-43b3-8b81-18b95b24fa40 07e04376a5a84ff9b84c76a6d2e762fa { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor' } -C3L-01729.RNA-Seq.chimeric.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 5521cf46-6770-44ae-abe0-3e44acf4524a.rna_seq.chimeric.gdc_realn.bam 163451245 BAM chimeric harmonized CPTAC3 93be17b3-d082-4f64-affb-b28b60a19b65 d0938b7fa33c6ccd4639dfed40b2037b { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor' } -C3L-01729.RNA-Seq.genomic.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 5521cf46-6770-44ae-abe0-3e44acf4524a.rna_seq.genomic.gdc_realn.bam 9806231082 BAM genomic harmonized CPTAC3 b378c596-fb8c-4c1b-a910-50b3807f4dfa 8ce7aafc75a54d0ec473072b0baf06d0 { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor' } -C3L-01729.RNA-Seq.R1_L002.T C3L-01729 UCEC RNA-Seq tumor CPT0127610009 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L002_R1_001.fastq.gz 4610458129 FASTQ R1_L002 unaligned CPTAC3 4604b126-1f14-4d78-8c65-2b2bdcfd1d3b ffdf9ac65ab11db58dd4cb6d1b7e24a2 { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor' } -C3L-01729.RNA-Seq.R1_.T C3L-01729 UCEC RNA-Seq tumor CPT0127630001 20210729_P3_B10_WB7988-Plate3_S22_R1_001.fastq.gz 7123899589 FASTQ R1_ unaligned CPTAC3 11fd98bd-7fc6-4c55-b059-b82b7aa5d264 f77f6c3adb8213333012867556367539 { 'aliquot_tag': 'ALQ_6ec0db26', 'gdc_sample_type': 'Primary Tumor' } -C3L-01729.RNA-Seq.R2_L002.T C3L-01729 UCEC RNA-Seq tumor CPT0127610009 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L002_R2_001.fastq.gz 4958931305 FASTQ R2_L002 unaligned CPTAC3 25f71782-2738-4f40-a72b-68b2b1520e64 59e85c8dca23e73a83a5e2221e273741 { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor' } -C3L-01729.RNA-Seq.R2_.T C3L-01729 UCEC RNA-Seq tumor CPT0127630001 20210729_P3_B10_WB7988-Plate3_S22_R2_001.fastq.gz 7407847324 FASTQ R2_ unaligned CPTAC3 c54fd92c-25f8-49ec-b779-1b162bb2cf37 f3870e6f2342b3a11b6f6e47cbdded95 { 'aliquot_tag': 'ALQ_6ec0db26', 'gdc_sample_type': 'Primary Tumor' } -C3L-01729.RNA-Seq.transcriptome.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 5521cf46-6770-44ae-abe0-3e44acf4524a.rna_seq.transcriptome.gdc_realn.bam 10944323971 BAM transcriptome harmonized CPTAC3 d2c34c13-3443-4a2f-ac96-7926299d40a0 374eaacf75fc57ac7317108b069f2f96 { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor' } +C3L-01729.RNA-Seq.chimeric.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 1e187540-8549-457a-aa78-2ff2351394ac.rna_seq.chimeric.gdc_realn.bam 163417062 BAM chimeric harmonized CPTAC3 04013ab8-ebd6-4e57-b7fc-b7f6c6134297 67f7b514d2968b370fca6775fd561ad7 { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor' } +C3L-01729.RNA-Seq.chimeric.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127630001 a5756a92-6ee7-4fc1-b31d-25c59d2dd7fe.rna_seq.chimeric.gdc_realn.bam 244298549 BAM chimeric harmonized CPTAC3 0a4c9f05-4524-4283-a0e2-03895c60b6ad a559ea667bccf598b2ee947d8a76f571 { 'aliquot_tag': 'ALQ_6ec0db26', 'gdc_sample_type': 'Primary Tumor' } +C3L-01729.RNA-Seq.genomic.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 1e187540-8549-457a-aa78-2ff2351394ac.rna_seq.genomic.gdc_realn.bam 9807675667 BAM genomic harmonized CPTAC3 73648173-962b-4917-82b5-96674cb59322 080310ad375c0257af4a2e89accd62b4 { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor' } +C3L-01729.RNA-Seq.genomic.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127630001 a5756a92-6ee7-4fc1-b31d-25c59d2dd7fe.rna_seq.genomic.gdc_realn.bam 10712819572 BAM genomic harmonized CPTAC3 14563c82-25f2-4092-a235-0a17a1c06b6a 2553566039eeb378d123bde1b4a9e960 { 'aliquot_tag': 'ALQ_6ec0db26', 'gdc_sample_type': 'Primary Tumor' } +C3L-01729.RNA-Seq.R1_L002.T C3L-01729 UCEC RNA-Seq tumor CPT0127610009 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L002_R1_001.fastq.gz 4610458129 FASTQ R1_L002 unaligned CPTAC3 4604b126-1f14-4d78-8c65-2b2bdcfd1d3b ffdf9ac65ab11db58dd4cb6d1b7e24a2 { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01729.RNA-Seq.R2_L002.T C3L-01729 UCEC RNA-Seq tumor CPT0127610009 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L002_R2_001.fastq.gz 4958931305 FASTQ R2_L002 unaligned CPTAC3 25f71782-2738-4f40-a72b-68b2b1520e64 59e85c8dca23e73a83a5e2221e273741 { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01729.RNA-Seq.T C3L-01729 UCEC RNA-Seq tumor CPT0127630001 20210729_P3_B10_WB7988-Plate3_S22_R1_001.fastq.gz 7123899589 FASTQ unaligned CPTAC3 11fd98bd-7fc6-4c55-b059-b82b7aa5d264 f77f6c3adb8213333012867556367539 +C3L-01729.RNA-Seq.T C3L-01729 UCEC RNA-Seq tumor CPT0127630001 20210729_P3_B10_WB7988-Plate3_S22_R2_001.fastq.gz 7407847324 FASTQ unaligned CPTAC3 c54fd92c-25f8-49ec-b779-1b162bb2cf37 f3870e6f2342b3a11b6f6e47cbdded95 +C3L-01729.RNA-Seq.transcriptome.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127610009 1e187540-8549-457a-aa78-2ff2351394ac.rna_seq.transcriptome.gdc_realn.bam 12529261231 BAM transcriptome harmonized CPTAC3 20fb1b07-6ce5-458c-9d02-a94a7e4d97b0 9e104e3df85524415161fcccbc31ca31 { 'aliquot_tag': 'ALQ_1adb0074', 'gdc_sample_type': 'Primary Tumor' } +C3L-01729.RNA-Seq.transcriptome.T.hg38 C3L-01729 UCEC RNA-Seq tumor CPT0127630001 a5756a92-6ee7-4fc1-b31d-25c59d2dd7fe.rna_seq.transcriptome.gdc_realn.bam 7433671458 BAM transcriptome harmonized CPTAC3 f1bfb3bf-c1d2-4bf1-9550-ead18b8eeb9e 524af9de239fe4abdf8c353a018761a0 { 'aliquot_tag': 'ALQ_6ec0db26', 'gdc_sample_type': 'Primary Tumor' } C3L-01729.WGS.N C3L-01729 UCEC WGS blood_normal CPT0127680002 CPT0127680002.WholeGenome.RP-1303.bam 64426051726 BAM aligned CPTAC3 cc1cab01-5f68-48f1-ac83-d165ddb1f6fc cd07c3716e13c95d59b3c6703c9cfe08 { 'aliquot_tag': 'ALQ_8019bb8d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01729.WGS.N.hg38 C3L-01729 UCEC WGS blood_normal CPT0127680002 7d95a659-ce2d-4ee3-a215-15999a007cc7_wgs_gdc_realn.bam 92867993921 BAM harmonized CPTAC3 0279c5ef-e231-4e28-b084-647b4c9eca0b 07f0ce3021d7f395cc92555b55cbe0b6 { 'aliquot_tag': 'ALQ_8019bb8d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01729.WGS.T C3L-01729 UCEC WGS tumor CPT0127610006 CPT0127610006.WholeGenome.RP-1303.bam 65092057252 BAM aligned CPTAC3 ae7e6799-e503-41e7-b344-dfa95d819699 60d6782f2c6c9d08142309ee6ef87382 { 'aliquot_tag': 'ALQ_8a641de5', 'gdc_sample_type': 'Primary Tumor' } @@ -8125,13 +8796,16 @@ C3L-01732.MethArray.Green.T C3L-01732 UCEC Methylation Array tumor CPT0099910009 C3L-01732.MethArray.Red.T C3L-01732 UCEC Methylation Array tumor CPT0099910009 202234360025_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 2b4dc5b4-ad8a-4450-807b-b2f017f148d0 eabc2cab47406ae15dfe3452bff6cff5 { 'aliquot_tag': 'ALQ_f1a3c1e9', 'gdc_sample_type': 'Primary Tumor' } C3L-01732.miRNA-Seq.T C3L-01732 UCEC miRNA-Seq tumor CPT0099910006 180828_UNC32-K00270_0112_AHWTLNBBXX_GTGAAA_S11_L006_R1_001.unaln.bam 232386137 BAM unaligned CPTAC3 9c7ad01c-9c11-48dc-be8e-1fc8f6dd6f85 c80d4b006fbea1e7828783d94a74d855 { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor' } C3L-01732.miRNA-Seq.T.hg38 C3L-01732 UCEC miRNA-Seq tumor CPT0099910006 fa39dc1c-7f56-4522-afff-862d568909eb_mirnaseq_gdc_realn.bam 255872199 BAM harmonized CPTAC3 1d8f2117-81bc-4f4e-8c66-52c21c865d1d eac00c3f6f126cc43589e653b4a5107b { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor' } -C3L-01732.RNA-Seq.chimeric.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 bf9b18e8-025e-4c16-b606-92b61ddacc73.rna_seq.chimeric.gdc_realn.bam 33448232 BAM chimeric harmonized CPTAC3 5e5e7f4a-d39f-4a8a-876c-e802b605a093 229e815e386d3e8d9a3971acc6513646 { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor' } -C3L-01732.RNA-Seq.genomic.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 bf9b18e8-025e-4c16-b606-92b61ddacc73.rna_seq.genomic.gdc_realn.bam 10253162856 BAM genomic harmonized CPTAC3 f92b49f7-58f5-42e1-bb8b-687362d21409 f6e66686586717b7bb60c17942deacab { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor' } -C3L-01732.RNA-Seq.R1_L006.T C3L-01732 UCEC RNA-Seq tumor CPT0099910006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGGCC_S20_L006_R1_001.fastq.gz 4733741687 FASTQ R1_L006 unaligned CPTAC3 b1bc0d03-c4da-4cbf-83f0-9923e34453b7 66c535fd473dec04be7ad375624b9e83 { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor' } -C3L-01732.RNA-Seq.R1_.T C3L-01732 UCEC RNA-Seq tumor CPT0099890001 20210714_P1_F8_WB7988_plate1_S68_R1_001.fastq.gz 4648651866 FASTQ R1_ unaligned CPTAC3 f4b5e327-f0aa-40b5-9888-e4c9159558cf aad3affb0edd03bf5b3aaa8021309f48 { 'aliquot_tag': 'ALQ_454d1bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01732.RNA-Seq.R2_L006.T C3L-01732 UCEC RNA-Seq tumor CPT0099910006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGGCC_S20_L006_R2_001.fastq.gz 5089579238 FASTQ R2_L006 unaligned CPTAC3 0f92fa3d-9fe1-47f1-8ceb-74db455e05c2 a87bb4871bbb50acc627b2ad75c76e23 { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor' } -C3L-01732.RNA-Seq.R2_.T C3L-01732 UCEC RNA-Seq tumor CPT0099890001 20210714_P1_F8_WB7988_plate1_S68_R2_001.fastq.gz 4795746454 FASTQ R2_ unaligned CPTAC3 852dd373-aefb-490e-9576-3ff9416b97be 4e2cf96d85655034faacbccbe4d29e46 { 'aliquot_tag': 'ALQ_454d1bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-01732.RNA-Seq.transcriptome.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 bf9b18e8-025e-4c16-b606-92b61ddacc73.rna_seq.transcriptome.gdc_realn.bam 10744157214 BAM transcriptome harmonized CPTAC3 793e7b2b-c910-4657-a3b0-860caeabad12 3e88b8c2d88dc23ceeceb45e0e996479 { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor' } +C3L-01732.RNA-Seq.chimeric.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099890001 4c99be9a-306b-40ca-900c-07ca47ef7acf.rna_seq.chimeric.gdc_realn.bam 124815586 BAM chimeric harmonized CPTAC3 4b8d5576-fec3-4471-8cd7-132c9f52ad16 cfd4812d3fb6703940ddeb9a04190c90 { 'aliquot_tag': 'ALQ_454d1bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01732.RNA-Seq.chimeric.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 b092c8b4-c828-4211-9048-53919ea2559d.rna_seq.chimeric.gdc_realn.bam 33438327 BAM chimeric harmonized CPTAC3 7484e710-0345-47c8-9085-adfbe50dfa5f aa404ba8493fcba83f38f43b6ce80bd0 { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor' } +C3L-01732.RNA-Seq.genomic.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099890001 4c99be9a-306b-40ca-900c-07ca47ef7acf.rna_seq.genomic.gdc_realn.bam 7257655565 BAM genomic harmonized CPTAC3 c4a8086c-03b3-42c5-a3fe-880bcf9b9774 4b691a24215cb7d7efff181a27124ee1 { 'aliquot_tag': 'ALQ_454d1bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01732.RNA-Seq.genomic.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 b092c8b4-c828-4211-9048-53919ea2559d.rna_seq.genomic.gdc_realn.bam 10254152483 BAM genomic harmonized CPTAC3 d2af1771-9a11-4140-ad02-7f72a3e91b63 31e3c46e2dc18e69334ac92a7ec65cf8 { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor' } +C3L-01732.RNA-Seq.R1_L006.T C3L-01732 UCEC RNA-Seq tumor CPT0099910006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGGCC_S20_L006_R1_001.fastq.gz 4733741687 FASTQ R1_L006 unaligned CPTAC3 b1bc0d03-c4da-4cbf-83f0-9923e34453b7 66c535fd473dec04be7ad375624b9e83 { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01732.RNA-Seq.R2_L006.T C3L-01732 UCEC RNA-Seq tumor CPT0099910006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTGGCC_S20_L006_R2_001.fastq.gz 5089579238 FASTQ R2_L006 unaligned CPTAC3 0f92fa3d-9fe1-47f1-8ceb-74db455e05c2 a87bb4871bbb50acc627b2ad75c76e23 { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01732.RNA-Seq.T C3L-01732 UCEC RNA-Seq tumor CPT0099890001 20210714_P1_F8_WB7988_plate1_S68_R1_001.fastq.gz 4648651866 FASTQ unaligned CPTAC3 f4b5e327-f0aa-40b5-9888-e4c9159558cf aad3affb0edd03bf5b3aaa8021309f48 +C3L-01732.RNA-Seq.T C3L-01732 UCEC RNA-Seq tumor CPT0099890001 20210714_P1_F8_WB7988_plate1_S68_R2_001.fastq.gz 4795746454 FASTQ unaligned CPTAC3 852dd373-aefb-490e-9576-3ff9416b97be 4e2cf96d85655034faacbccbe4d29e46 +C3L-01732.RNA-Seq.transcriptome.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099890001 4c99be9a-306b-40ca-900c-07ca47ef7acf.rna_seq.transcriptome.gdc_realn.bam 5850951997 BAM transcriptome harmonized CPTAC3 ae5b151e-c2ff-4948-9495-deaafcb4f9f0 03ab77e919bcc194870588cfc41f1507 { 'aliquot_tag': 'ALQ_454d1bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-01732.RNA-Seq.transcriptome.T.hg38 C3L-01732 UCEC RNA-Seq tumor CPT0099910006 b092c8b4-c828-4211-9048-53919ea2559d.rna_seq.transcriptome.gdc_realn.bam 12240145051 BAM transcriptome harmonized CPTAC3 e49fd28f-86db-420f-a7d7-4409a0289437 6ed45525a66098763fe3a69d996644fa { 'aliquot_tag': 'ALQ_611cdc78', 'gdc_sample_type': 'Primary Tumor' } C3L-01732.WGS.N C3L-01732 UCEC WGS blood_normal CPT0099960002 CPT0099960002.WholeGenome.RP-1303.bam 67425693923 BAM aligned CPTAC3 f46ec9fe-a543-4e29-979a-b2ecf67af771 9bd8247fa78748c0b805e180b897cb53 { 'aliquot_tag': 'ALQ_d451c471', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01732.WGS.N.hg38 C3L-01732 UCEC WGS blood_normal CPT0099960002 0722e4e7-531f-414f-9618-b845877762ad_wgs_gdc_realn.bam 97748914052 BAM harmonized CPTAC3 4df6151e-2e7b-485a-b75e-f8ddafeb1f57 ba83a970b0d9f832172c97ad60324a8c { 'aliquot_tag': 'ALQ_d451c471', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01732.WGS.T C3L-01732 UCEC WGS tumor CPT0099910009 CPT0099910009.WholeGenome.RP-1303.bam 55855023178 BAM aligned CPTAC3 061f73c9-9bb3-437b-a248-274d40400cbd 6e37d6c4d35462a7b37b073347f6ee2a { 'aliquot_tag': 'ALQ_f1a3c1e9', 'gdc_sample_type': 'Primary Tumor' } @@ -8144,13 +8818,16 @@ C3L-01739.MethArray.Green.T C3L-01739 UCEC Methylation Array tumor CPT0100100009 C3L-01739.MethArray.Red.T C3L-01739 UCEC Methylation Array tumor CPT0100100009 202234380050_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 87eacc2d-1bdf-456a-99bf-ca5e5d14524e 5c0a43cb433870e5bdc136b71247c179 { 'aliquot_tag': 'ALQ_bd3c208f', 'gdc_sample_type': 'Primary Tumor' } C3L-01739.miRNA-Seq.T C3L-01739 UCEC miRNA-Seq tumor CPT0100100006 180828_UNC32-K00270_0112_AHWTLNBBXX_GTGGCC_S12_L006_R1_001.unaln.bam 201420446 BAM unaligned CPTAC3 d8d2eafe-cf4a-44e5-9594-f30789b79c0a 4cda17bd4024bdcd937797803c70931e { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor' } C3L-01739.miRNA-Seq.T.hg38 C3L-01739 UCEC miRNA-Seq tumor CPT0100100006 f507146e-3dba-4627-8d65-80f54fbbb79b_mirnaseq_gdc_realn.bam 222583307 BAM harmonized CPTAC3 c3696ff1-33c2-4772-80da-9ec2b061e852 7e27ede8047a60d781f2315557e7aa07 { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01739.RNA-Seq.chimeric.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 812dff30-6b34-4e98-b3c4-4536b359d5e2.rna_seq.chimeric.gdc_realn.bam 37294772 BAM chimeric harmonized CPTAC3 f0bd3197-d420-4062-bf85-89419ba58c56 bc006855bc0673cf3f1d95deaf6c6ec2 { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01739.RNA-Seq.genomic.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 812dff30-6b34-4e98-b3c4-4536b359d5e2.rna_seq.genomic.gdc_realn.bam 9556077530 BAM genomic harmonized CPTAC3 df993706-0ec0-4af8-81b6-35b5e5a2bf4e 4dc11419b25a155c22d4ea46ef95f38e { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01739.RNA-Seq.R1_L006.T C3L-01739 UCEC RNA-Seq tumor CPT0100100006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTTTCG_S23_L006_R1_001.fastq.gz 4518577327 FASTQ R1_L006 unaligned CPTAC3 d95f57a9-4a63-4b0b-96cc-9648528d0bcf 6e1a33f929b683e4173797579034cbe7 { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01739.RNA-Seq.R1_.T C3L-01739 UCEC RNA-Seq tumor CPT0100080001 20210723_P2_C6_WB7988-plate2_S30_R1_001.fastq.gz 7193537019 FASTQ R1_ unaligned CPTAC3 dcefc962-c9a5-41d0-aa6b-bdf0d39268b5 b564ec71e7e5932d67c554670ce4fc2d { 'aliquot_tag': 'ALQ_48cb30d9', 'gdc_sample_type': 'Primary Tumor' } -C3L-01739.RNA-Seq.R2_L006.T C3L-01739 UCEC RNA-Seq tumor CPT0100100006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTTTCG_S23_L006_R2_001.fastq.gz 4925058504 FASTQ R2_L006 unaligned CPTAC3 0dea6d6e-bb3f-4413-973c-e323be312921 7592dbdc60b6f127ea72b2fd693e6973 { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01739.RNA-Seq.R2_.T C3L-01739 UCEC RNA-Seq tumor CPT0100080001 20210723_P2_C6_WB7988-plate2_S30_R2_001.fastq.gz 7397365680 FASTQ R2_ unaligned CPTAC3 bf10e4b6-ff52-48c8-b16a-835a3cc3f5bd a90f37b28b50030c7b9088665bfc3506 { 'aliquot_tag': 'ALQ_48cb30d9', 'gdc_sample_type': 'Primary Tumor' } -C3L-01739.RNA-Seq.transcriptome.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 812dff30-6b34-4e98-b3c4-4536b359d5e2.rna_seq.transcriptome.gdc_realn.bam 10655880608 BAM transcriptome harmonized CPTAC3 90fee14b-e70f-4332-ace9-00e14f7b0958 6351fca7a9989f5bff8bb812ffc96fd7 { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01739.RNA-Seq.chimeric.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100080001 d910e020-1db4-436f-b40d-33b6b4334678.rna_seq.chimeric.gdc_realn.bam 278151028 BAM chimeric harmonized CPTAC3 e056af85-2fdb-41d1-8860-d7ed8456ef53 50e518799f5be108b2ee8d58540a8481 { 'aliquot_tag': 'ALQ_48cb30d9', 'gdc_sample_type': 'Primary Tumor' } +C3L-01739.RNA-Seq.chimeric.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 760a721d-923c-4a01-94e1-73e2c8fb0d0c.rna_seq.chimeric.gdc_realn.bam 37284080 BAM chimeric harmonized CPTAC3 eb249ccd-9dc5-426f-ac78-9f88c8f7cb36 f1cd4e0fd7424cd983ac9ce37d64da6d { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01739.RNA-Seq.genomic.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100080001 d910e020-1db4-436f-b40d-33b6b4334678.rna_seq.genomic.gdc_realn.bam 11830628399 BAM genomic harmonized CPTAC3 f96a68f5-1458-444e-82f5-0f7f9a0f8bf8 ccd15340ec6b40aa815d7fe6474101ec { 'aliquot_tag': 'ALQ_48cb30d9', 'gdc_sample_type': 'Primary Tumor' } +C3L-01739.RNA-Seq.genomic.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 760a721d-923c-4a01-94e1-73e2c8fb0d0c.rna_seq.genomic.gdc_realn.bam 9557950272 BAM genomic harmonized CPTAC3 c81ba1ba-d541-467e-a7f3-b71d2ef4d603 5e1648f78f4cab7f1797c1b744296e77 { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01739.RNA-Seq.R1_L006.T C3L-01739 UCEC RNA-Seq tumor CPT0100100006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTTTCG_S23_L006_R1_001.fastq.gz 4518577327 FASTQ R1_L006 unaligned CPTAC3 d95f57a9-4a63-4b0b-96cc-9648528d0bcf 6e1a33f929b683e4173797579034cbe7 { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01739.RNA-Seq.R2_L006.T C3L-01739 UCEC RNA-Seq tumor CPT0100100006 171129_UNC32-K00270_0067_BHN2N5BBXX_GTTTCG_S23_L006_R2_001.fastq.gz 4925058504 FASTQ R2_L006 unaligned CPTAC3 0dea6d6e-bb3f-4413-973c-e323be312921 7592dbdc60b6f127ea72b2fd693e6973 { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01739.RNA-Seq.T C3L-01739 UCEC RNA-Seq tumor CPT0100080001 20210723_P2_C6_WB7988-plate2_S30_R1_001.fastq.gz 7193537019 FASTQ unaligned CPTAC3 dcefc962-c9a5-41d0-aa6b-bdf0d39268b5 b564ec71e7e5932d67c554670ce4fc2d +C3L-01739.RNA-Seq.T C3L-01739 UCEC RNA-Seq tumor CPT0100080001 20210723_P2_C6_WB7988-plate2_S30_R2_001.fastq.gz 7397365680 FASTQ unaligned CPTAC3 bf10e4b6-ff52-48c8-b16a-835a3cc3f5bd a90f37b28b50030c7b9088665bfc3506 +C3L-01739.RNA-Seq.transcriptome.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100080001 d910e020-1db4-436f-b40d-33b6b4334678.rna_seq.transcriptome.gdc_realn.bam 5826531711 BAM transcriptome harmonized CPTAC3 c6c68c75-e72b-46d5-9a4e-eb2b878f6589 2c3e9fcccc67f3e65252db2b4a48d320 { 'aliquot_tag': 'ALQ_48cb30d9', 'gdc_sample_type': 'Primary Tumor' } +C3L-01739.RNA-Seq.transcriptome.T.hg38 C3L-01739 UCEC RNA-Seq tumor CPT0100100006 760a721d-923c-4a01-94e1-73e2c8fb0d0c.rna_seq.transcriptome.gdc_realn.bam 12324883320 BAM transcriptome harmonized CPTAC3 87d4bed9-03ad-4f3a-8b3a-333cd2250f22 7bf9eac8968e6b8da42907e6418779a8 { 'aliquot_tag': 'ALQ_2d833d1e', 'gdc_sample_type': 'Primary Tumor' } C3L-01739.WGS.N C3L-01739 UCEC WGS blood_normal CPT0100140002 CPT0100140002.WholeGenome.RP-1303.bam 58244167790 BAM aligned CPTAC3 eac6c29e-4587-4f2a-ad3c-ba4eff1adc6d cb1d99b40e720b8f9c7d2f637a77ac11 { 'aliquot_tag': 'ALQ_df6e5fc7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01739.WGS.N.hg38 C3L-01739 UCEC WGS blood_normal CPT0100140002 34b6ff5e-3acd-4b44-a635-060ce8ef0f4a_wgs_gdc_realn.bam 85287636797 BAM harmonized CPTAC3 9a8754ae-98f3-4361-ab03-42c306872deb 771fb50895150cf0af4730068c61705c { 'aliquot_tag': 'ALQ_df6e5fc7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01739.WGS.T C3L-01739 UCEC WGS tumor CPT0100100009 CPT0100100009.WholeGenome.RP-1303.bam 65824019064 BAM aligned CPTAC3 d9c266f8-9989-40ce-807d-b944678c25f3 171a89872b1be76a739ce91024b7c583 { 'aliquot_tag': 'ALQ_bd3c208f', 'gdc_sample_type': 'Primary Tumor' } @@ -8163,12 +8840,15 @@ C3L-01744.MethArray.Green.T C3L-01744 UCEC Methylation Array tumor CPT0093280009 C3L-01744.MethArray.Red.T C3L-01744 UCEC Methylation Array tumor CPT0093280009 202234370093_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 eda68eec-1496-4ae1-b4da-f61b5f0452d7 2f3fe696e40fa4a03335766be25850d3 { 'aliquot_tag': 'ALQ_32040c15', 'gdc_sample_type': 'Primary Tumor' } C3L-01744.miRNA-Seq.T C3L-01744 UCEC miRNA-Seq tumor CPT0093280006 180724_UNC32-K00270_0106_BHWK3MBBXX_TCGAAG_S22_L007_R1_001.unaln.bam 175096830 BAM unaligned CPTAC3 261cd912-f937-4cd4-a7df-1194e435bba4 18a418a2ba74a0533f025ebe90426c64 { 'aliquot_tag': 'ALQ_a2bb1184', 'gdc_sample_type': 'Primary Tumor' } C3L-01744.miRNA-Seq.T.hg38 C3L-01744 UCEC miRNA-Seq tumor CPT0093280006 7a57a25f-1d9d-4823-9731-805c24799fc7_mirnaseq_gdc_realn.bam 190977432 BAM harmonized CPTAC3 deb6071c-b4de-4b20-aaa1-471649b6d866 19407bfb55816763457d4849dcb825e8 { 'aliquot_tag': 'ALQ_a2bb1184', 'gdc_sample_type': 'Primary Tumor' } +C3L-01744.RNA-Seq.chimeric.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093260001 8ec6a776-8a03-4b41-b131-a7ce62fff523.rna_seq.chimeric.gdc_realn.bam 290289941 BAM chimeric harmonized CPTAC3 6fca9b8e-2a92-4ef4-8d21-eda576a7012a 63464ffd8aea3a8a5dc75da892a62a9a { 'aliquot_tag': 'ALQ_83ef3a46', 'gdc_sample_type': 'Primary Tumor' } C3L-01744.RNA-Seq.chimeric.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093280006 8013a7e1-9832-48f2-be90-4a928bf9e45e.rna_seq.chimeric.gdc_realn.bam 73059443 BAM chimeric harmonized CPTAC3 4ee217a1-20e5-4e43-a622-a5f16ab3f60c 759067fe1e1f375d001537e1039d1a7e { 'aliquot_tag': 'ALQ_a2bb1184', 'gdc_sample_type': 'Primary Tumor' } -C3L-01744.RNA-Seq.genomic.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093280006 8013a7e1-9832-48f2-be90-4a928bf9e45e.rna_seq.genomic.gdc_realn.bam 12383061917 BAM genomic harmonized CPTAC3 daecdbb0-d596-45c9-8842-dc63f585fa5c e2463b9afd2cb60f1258b54acb1a174b { 'aliquot_tag': 'ALQ_a2bb1184', 'gdc_sample_type': 'Primary Tumor' } -C3L-01744.RNA-Seq.R1_L006.T C3L-01744 UCEC RNA-Seq tumor CPT0093280006 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L006_R1_001.fastq.gz 5831041874 FASTQ R1_L006 unaligned CPTAC3 0eefe67a-b297-4c2f-87ad-d25b83e43a2b c340f987a8602c9626ef8e9dd8ae7ec8 { 'aliquot_tag': 'ALQ_a2bb1184', 'gdc_sample_type': 'Primary Tumor' } -C3L-01744.RNA-Seq.R1_.T C3L-01744 UCEC RNA-Seq tumor CPT0093260001 20210723_P2_E5_WB7988-plate2_S53_R1_001.fastq.gz 6860518341 FASTQ R1_ unaligned CPTAC3 61ac0a53-a6a4-485b-b66b-5943ad25c674 baf73826b29853fb4170e8711575cb4d { 'aliquot_tag': 'ALQ_83ef3a46', 'gdc_sample_type': 'Primary Tumor' } -C3L-01744.RNA-Seq.R2_L006.T C3L-01744 UCEC RNA-Seq tumor CPT0093280006 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L006_R2_001.fastq.gz 6144467611 FASTQ R2_L006 unaligned CPTAC3 6d97b258-2fc8-4b10-9c6c-d1e7dac46106 55488fc235fa581548202d6655ecdb15 { 'aliquot_tag': 'ALQ_a2bb1184', 'gdc_sample_type': 'Primary Tumor' } -C3L-01744.RNA-Seq.R2_.T C3L-01744 UCEC RNA-Seq tumor CPT0093260001 20210723_P2_E5_WB7988-plate2_S53_R2_001.fastq.gz 7051724252 FASTQ R2_ unaligned CPTAC3 1aa7308c-d11a-4363-b635-fe438693eadc f76e0ec43b5bd45755038cb8034c1861 { 'aliquot_tag': 'ALQ_83ef3a46', 'gdc_sample_type': 'Primary Tumor' } +C3L-01744.RNA-Seq.genomic.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093260001 8ec6a776-8a03-4b41-b131-a7ce62fff523.rna_seq.genomic.gdc_realn.bam 11702739929 BAM genomic harmonized CPTAC3 3535d479-a02a-4c35-b932-dbe52cd7b66f 31868a502d8ba2b09913abf7c6d8032d { 'aliquot_tag': 'ALQ_83ef3a46', 'gdc_sample_type': 'Primary Tumor' } +C3L-01744.RNA-Seq.genomic.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093280006 8013a7e1-9832-48f2-be90-4a928bf9e45e.rna_seq.genomic.gdc_realn.bam 12383061917 BAM genomic harmonized CPTAC3 fadf4b9e-ac98-4373-a816-de2b32bcb90d e2463b9afd2cb60f1258b54acb1a174b { 'aliquot_tag': 'ALQ_a2bb1184', 'gdc_sample_type': 'Primary Tumor' } +C3L-01744.RNA-Seq.R1_L006.T C3L-01744 UCEC RNA-Seq tumor CPT0093280006 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L006_R1_001.fastq.gz 5831041874 FASTQ R1_L006 unaligned CPTAC3 0eefe67a-b297-4c2f-87ad-d25b83e43a2b c340f987a8602c9626ef8e9dd8ae7ec8 { 'aliquot_tag': 'ALQ_a2bb1184', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01744.RNA-Seq.R2_L006.T C3L-01744 UCEC RNA-Seq tumor CPT0093280006 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L006_R2_001.fastq.gz 6144467611 FASTQ R2_L006 unaligned CPTAC3 6d97b258-2fc8-4b10-9c6c-d1e7dac46106 55488fc235fa581548202d6655ecdb15 { 'aliquot_tag': 'ALQ_a2bb1184', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01744.RNA-Seq.T C3L-01744 UCEC RNA-Seq tumor CPT0093260001 20210723_P2_E5_WB7988-plate2_S53_R1_001.fastq.gz 6860518341 FASTQ unaligned CPTAC3 61ac0a53-a6a4-485b-b66b-5943ad25c674 baf73826b29853fb4170e8711575cb4d +C3L-01744.RNA-Seq.T C3L-01744 UCEC RNA-Seq tumor CPT0093260001 20210723_P2_E5_WB7988-plate2_S53_R2_001.fastq.gz 7051724252 FASTQ unaligned CPTAC3 1aa7308c-d11a-4363-b635-fe438693eadc f76e0ec43b5bd45755038cb8034c1861 +C3L-01744.RNA-Seq.transcriptome.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093260001 8ec6a776-8a03-4b41-b131-a7ce62fff523.rna_seq.transcriptome.gdc_realn.bam 4802412909 BAM transcriptome harmonized CPTAC3 7c73e7db-9ebc-4800-b54e-f26b3e9087e5 0aa3b3779ae2af9e56979055fde9a45a { 'aliquot_tag': 'ALQ_83ef3a46', 'gdc_sample_type': 'Primary Tumor' } C3L-01744.RNA-Seq.transcriptome.T.hg38 C3L-01744 UCEC RNA-Seq tumor CPT0093280006 8013a7e1-9832-48f2-be90-4a928bf9e45e.rna_seq.transcriptome.gdc_realn.bam 15402670786 BAM transcriptome harmonized CPTAC3 9baff2d1-700a-45a7-9d68-aa9a963d2fb1 9b02bca772886ffcdd1a1cd551477528 { 'aliquot_tag': 'ALQ_a2bb1184', 'gdc_sample_type': 'Primary Tumor' } C3L-01744.WGS.N C3L-01744 UCEC WGS blood_normal CPT0093320002 CPT0093320002.WholeGenome.RP-1303.bam 65328130664 BAM aligned CPTAC3 fad09c9a-b5aa-4676-839e-627828a404b8 b20edd1955d6238df934e74d7200efee { 'aliquot_tag': 'ALQ_243a1e99', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01744.WGS.N.hg38 C3L-01744 UCEC WGS blood_normal CPT0093320002 e3b971ec-48d2-431f-ae8b-719525fa1716_wgs_gdc_realn.bam 95904828699 BAM harmonized CPTAC3 59d5779f-3b81-49d3-9e1e-c081765a3df5 3b466849292659da30c8d40d07625717 { 'aliquot_tag': 'ALQ_243a1e99', 'gdc_sample_type': 'Blood Derived Normal' } @@ -8182,13 +8862,16 @@ C3L-01749.MethArray.Green.T C3L-01749 UCEC Methylation Array tumor CPT0127700006 C3L-01749.MethArray.Red.T C3L-01749 UCEC Methylation Array tumor CPT0127700006 203027380028_R02C01_Red.idat 13676241 IDAT Red NA CPTAC3 04268f32-5039-4d79-a361-f8a088481d15 7960feeecd613a486ffe49ce56f4c89d { 'aliquot_tag': 'ALQ_7c58e7f0', 'gdc_sample_type': 'Primary Tumor' } C3L-01749.miRNA-Seq.T C3L-01749 UCEC miRNA-Seq tumor CPT0127700009 181108_UNC31-K00269_0162_AH255GBBXY_CCGTCC_S40_L002_R1_001.unaln.bam 210482874 BAM unaligned CPTAC3 b66630ca-12fc-4bbd-9e5c-a920b11e851a 2ad76097701d21a09c8c0981d2035dbb { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor' } C3L-01749.miRNA-Seq.T.hg38 C3L-01749 UCEC miRNA-Seq tumor CPT0127700009 d2bf54fc-f8ea-4337-af00-25596053eef7_mirnaseq_gdc_realn.bam 234113415 BAM harmonized CPTAC3 30afe505-277f-4b75-8e2e-027e3b999e75 f6516ae2475cf65654ef1fceb088d8b0 { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01749.RNA-Seq.chimeric.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 2f1e4837-304e-443a-8b9d-6c495cf59464.rna_seq.chimeric.gdc_realn.bam 100963291 BAM chimeric harmonized CPTAC3 1d87c923-873a-438b-9df5-d4aaaa4d5fc8 bba1f5c6ec220a55e9df5a25e7d49ac2 { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01749.RNA-Seq.genomic.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 2f1e4837-304e-443a-8b9d-6c495cf59464.rna_seq.genomic.gdc_realn.bam 8622290096 BAM genomic harmonized CPTAC3 e96b380e-15e8-4ef8-b7b2-c26300c01620 de256ef8bd2ae89b10525c828ea9874c { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01749.RNA-Seq.R1_L001.T C3L-01749 UCEC RNA-Seq tumor CPT0127700009 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L001_R1_001.fastq.gz 3938416423 FASTQ R1_L001 unaligned CPTAC3 9dd3ea5a-a3bd-4434-9f0b-0d35cc305330 193ae2547b9384d86d8d21272240b153 { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01749.RNA-Seq.R1_.T C3L-01749 UCEC RNA-Seq tumor CPT0127720001 20210714_P1_H2_WB7988_plate1_S85_R1_001.fastq.gz 4798529068 FASTQ R1_ unaligned CPTAC3 d465c70b-65d3-4567-b275-b6c0caaedca1 08ceb0ce73dcfc3024fa7093215b4e97 { 'aliquot_tag': 'ALQ_98fc2133', 'gdc_sample_type': 'Primary Tumor' } -C3L-01749.RNA-Seq.R2_L001.T C3L-01749 UCEC RNA-Seq tumor CPT0127700009 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L001_R2_001.fastq.gz 4035920408 FASTQ R2_L001 unaligned CPTAC3 f7d79deb-c383-4e3b-b841-893600b4cfe7 6eaf595d0e0ed3f2f06a7f9e7b72f157 { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor' } -C3L-01749.RNA-Seq.R2_.T C3L-01749 UCEC RNA-Seq tumor CPT0127720001 20210714_P1_H2_WB7988_plate1_S85_R2_001.fastq.gz 4946296881 FASTQ R2_ unaligned CPTAC3 fcaf44bb-0f9f-42bb-8163-b547d44eef1c 22248d8c4281e87d7555509ee0a37ec7 { 'aliquot_tag': 'ALQ_98fc2133', 'gdc_sample_type': 'Primary Tumor' } -C3L-01749.RNA-Seq.transcriptome.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 2f1e4837-304e-443a-8b9d-6c495cf59464.rna_seq.transcriptome.gdc_realn.bam 7956145508 BAM transcriptome harmonized CPTAC3 ff778106-b2ab-47b8-a4c2-82449ac05125 adca951de7ed6274812466a7455fd24f { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor' } +C3L-01749.RNA-Seq.chimeric.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 5fefb901-a85e-405f-a821-c79b3a3285b0.rna_seq.chimeric.gdc_realn.bam 100937072 BAM chimeric harmonized CPTAC3 e44f686f-b670-4200-b112-581b1a94b44c 82fe7c946e84c21e6e6be4295a07662b { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor' } +C3L-01749.RNA-Seq.chimeric.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127720001 e0d00b33-baf9-4769-a195-623e6b115801.rna_seq.chimeric.gdc_realn.bam 171318692 BAM chimeric harmonized CPTAC3 7491d510-62ca-44e1-b243-23f84382fe65 92b00894852f71bebc265b58e2c7ebb2 { 'aliquot_tag': 'ALQ_98fc2133', 'gdc_sample_type': 'Primary Tumor' } +C3L-01749.RNA-Seq.genomic.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 5fefb901-a85e-405f-a821-c79b3a3285b0.rna_seq.genomic.gdc_realn.bam 8623158934 BAM genomic harmonized CPTAC3 1bb9defb-674a-465e-9b60-207349539ce4 82a7fc9da016196114cb88c7f84dc8b6 { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor' } +C3L-01749.RNA-Seq.genomic.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127720001 e0d00b33-baf9-4769-a195-623e6b115801.rna_seq.genomic.gdc_realn.bam 7754384329 BAM genomic harmonized CPTAC3 8abef200-b6bd-4551-99c5-97e8864ccdaf 66f89e3f3082be04a89ed0ed6141014a { 'aliquot_tag': 'ALQ_98fc2133', 'gdc_sample_type': 'Primary Tumor' } +C3L-01749.RNA-Seq.R1_L001.T C3L-01749 UCEC RNA-Seq tumor CPT0127700009 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L001_R1_001.fastq.gz 3938416423 FASTQ R1_L001 unaligned CPTAC3 9dd3ea5a-a3bd-4434-9f0b-0d35cc305330 193ae2547b9384d86d8d21272240b153 { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01749.RNA-Seq.R2_L001.T C3L-01749 UCEC RNA-Seq tumor CPT0127700009 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L001_R2_001.fastq.gz 4035920408 FASTQ R2_L001 unaligned CPTAC3 f7d79deb-c383-4e3b-b841-893600b4cfe7 6eaf595d0e0ed3f2f06a7f9e7b72f157 { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01749.RNA-Seq.T C3L-01749 UCEC RNA-Seq tumor CPT0127720001 20210714_P1_H2_WB7988_plate1_S85_R1_001.fastq.gz 4798529068 FASTQ unaligned CPTAC3 d465c70b-65d3-4567-b275-b6c0caaedca1 08ceb0ce73dcfc3024fa7093215b4e97 +C3L-01749.RNA-Seq.T C3L-01749 UCEC RNA-Seq tumor CPT0127720001 20210714_P1_H2_WB7988_plate1_S85_R2_001.fastq.gz 4946296881 FASTQ unaligned CPTAC3 fcaf44bb-0f9f-42bb-8163-b547d44eef1c 22248d8c4281e87d7555509ee0a37ec7 +C3L-01749.RNA-Seq.transcriptome.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127700009 5fefb901-a85e-405f-a821-c79b3a3285b0.rna_seq.transcriptome.gdc_realn.bam 9086829853 BAM transcriptome harmonized CPTAC3 bd1b7fd9-ff8e-463e-ba6d-6264e77a3449 efc54362e3c13cbb1eaeb89ea2101dd2 { 'aliquot_tag': 'ALQ_ece7fa61', 'gdc_sample_type': 'Primary Tumor' } +C3L-01749.RNA-Seq.transcriptome.T.hg38 C3L-01749 UCEC RNA-Seq tumor CPT0127720001 e0d00b33-baf9-4769-a195-623e6b115801.rna_seq.transcriptome.gdc_realn.bam 3946812640 BAM transcriptome harmonized CPTAC3 485b46ad-42c1-44ce-a7fd-316378a911f8 77b53fa06191c698e0f2e1de592371c1 { 'aliquot_tag': 'ALQ_98fc2133', 'gdc_sample_type': 'Primary Tumor' } C3L-01749.WGS.N C3L-01749 UCEC WGS blood_normal CPT0127770002 CPT0127770002.WholeGenome.RP-1303.bam 59558409752 BAM aligned CPTAC3 d6747ee1-2d39-42b4-8fc6-5196110d9ae3 566453450f7af82f47e989bdc39024d4 { 'aliquot_tag': 'ALQ_c915fff9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01749.WGS.N.hg38 C3L-01749 UCEC WGS blood_normal CPT0127770002 048cef20-9b2d-4d4c-9662-0670ae87b014_wgs_gdc_realn.bam 84872635100 BAM harmonized CPTAC3 a8139c38-f0e8-4ff9-8243-81abd2d2d0e4 dcbf57794b12445bd7b319e2cc0ecc5a { 'aliquot_tag': 'ALQ_c915fff9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01749.WGS.T C3L-01749 UCEC WGS tumor CPT0127700006 CPT0127700006.WholeGenome.RP-1303.bam 64695334394 BAM aligned CPTAC3 7962d164-12f2-4a02-aac3-96ff165145ab 0528158e89919857e5089d4424040fe4 { 'aliquot_tag': 'ALQ_7c58e7f0', 'gdc_sample_type': 'Primary Tumor' } @@ -8202,13 +8885,16 @@ C3L-01833.MethArray.Red.T C3L-01833 UCEC Methylation Array tumor CPT0100010009 2 C3L-01833.miRNA-Seq.T C3L-01833 UCEC miRNA-Seq tumor CPT0100010006 180828_UNC32-K00270_0112_AHWTLNBBXX_GTTTCG_S13_L006_R1_001.unaln.bam 146463421 BAM unaligned CPTAC3 0cf0de75-cdd0-4928-b012-ca1f218966e8 b4efd5649c81e001ad30ea072db25aed { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } C3L-01833.miRNA-Seq.T C3L-01833 UCEC miRNA-Seq tumor CPT0100010006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTTTCG_S21_L007_R1_001.unaln.bam 148613148 BAM unaligned CPTAC3 347ad43c-a905-4559-8b83-f32b5e9a1bc4 df40b2401f1b6eabce22697d44b63342 { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } C3L-01833.miRNA-Seq.T.hg38 C3L-01833 UCEC miRNA-Seq tumor CPT0100010006 bcd4ffbb-6a17-428a-b2c4-98eda37c0113_mirnaseq_gdc_realn.bam 325294046 BAM harmonized CPTAC3 abde0a82-8dfb-4244-9706-39f4d14a34e0 35029d3918916ff8bda13a6316ae9456 { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01833.RNA-Seq.chimeric.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 9f60c24e-a709-42be-89e5-b377d152fc8d.rna_seq.chimeric.gdc_realn.bam 32836215 BAM chimeric harmonized CPTAC3 51e71984-8b25-4af7-ad5d-38f6f622778a 4762108cd94782e7c402c06adc1e71a4 { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01833.RNA-Seq.genomic.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 9f60c24e-a709-42be-89e5-b377d152fc8d.rna_seq.genomic.gdc_realn.bam 8647783551 BAM genomic harmonized CPTAC3 784b82fc-6051-4f13-91a0-d10cdb8b6fcf e865ddcb3933bececa35beae6a2723e2 { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01833.RNA-Seq.R1_L005.T C3L-01833 UCEC RNA-Seq tumor CPT0100010006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGTACG_S18_L005_R1_001.fastq.gz 3954979116 FASTQ R1_L005 unaligned CPTAC3 0707c2e3-fe4a-447e-88a1-7ebf9897403f 995ff954e0008799d5bc05782309af2b { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01833.RNA-Seq.R1_.T C3L-01833 UCEC RNA-Seq tumor CPT0099990001 20210714_P1_A6_WB7988_plate1_S6_R1_001.fastq.gz 7227952247 FASTQ R1_ unaligned CPTAC3 5bc8af46-2f1d-4e9f-96c1-31f1e0d584cb 70aa399ec00f6ac27ace2ab1b360a9b9 { 'aliquot_tag': 'ALQ_cf08021a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01833.RNA-Seq.R2_L005.T C3L-01833 UCEC RNA-Seq tumor CPT0100010006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGTACG_S18_L005_R2_001.fastq.gz 4378439977 FASTQ R2_L005 unaligned CPTAC3 c1ac3838-34f1-4b28-ab69-c4c2a8b92594 88dc2c19a8619fe49d3c3b886735baa7 { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01833.RNA-Seq.R2_.T C3L-01833 UCEC RNA-Seq tumor CPT0099990001 20210714_P1_A6_WB7988_plate1_S6_R2_001.fastq.gz 7547116685 FASTQ R2_ unaligned CPTAC3 5382cf03-129b-4518-a0e8-62e8897f4013 1fdb05b96132c0f136ffc71a7a99ea38 { 'aliquot_tag': 'ALQ_cf08021a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01833.RNA-Seq.transcriptome.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 9f60c24e-a709-42be-89e5-b377d152fc8d.rna_seq.transcriptome.gdc_realn.bam 7328683920 BAM transcriptome harmonized CPTAC3 aca3ca68-92bc-4739-89bf-208d8ebb7a5d adc0e5717d35a7b2e036c32f10738072 { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01833.RNA-Seq.chimeric.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0099990001 c5f6ad83-dc92-482e-8daf-2c1006693f03.rna_seq.chimeric.gdc_realn.bam 274367645 BAM chimeric harmonized CPTAC3 e80c2008-3d88-4972-8d3d-132057991da9 9b5f4f11977f88acc05acfc8139c76fd { 'aliquot_tag': 'ALQ_cf08021a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01833.RNA-Seq.chimeric.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 910b39e2-29f7-4cd5-90b6-318840595628.rna_seq.chimeric.gdc_realn.bam 32824644 BAM chimeric harmonized CPTAC3 cebbd4c1-6a36-4739-a8c0-5454552c0271 00a55c6f09777a48dbf228fadcaf0742 { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01833.RNA-Seq.genomic.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0099990001 c5f6ad83-dc92-482e-8daf-2c1006693f03.rna_seq.genomic.gdc_realn.bam 11934785924 BAM genomic harmonized CPTAC3 986f83d4-3621-4608-9443-fbf89d84fd90 ad401d990257eede137455816242d35e { 'aliquot_tag': 'ALQ_cf08021a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01833.RNA-Seq.genomic.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 910b39e2-29f7-4cd5-90b6-318840595628.rna_seq.genomic.gdc_realn.bam 8648961019 BAM genomic harmonized CPTAC3 07452e69-4720-47ec-a06d-6cc69f1ab6e1 faad28f9f12d52921337ca4fe29b8337 { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01833.RNA-Seq.R1_L005.T C3L-01833 UCEC RNA-Seq tumor CPT0100010006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGTACG_S18_L005_R1_001.fastq.gz 3954979116 FASTQ R1_L005 unaligned CPTAC3 0707c2e3-fe4a-447e-88a1-7ebf9897403f 995ff954e0008799d5bc05782309af2b { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01833.RNA-Seq.R2_L005.T C3L-01833 UCEC RNA-Seq tumor CPT0100010006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGTACG_S18_L005_R2_001.fastq.gz 4378439977 FASTQ R2_L005 unaligned CPTAC3 c1ac3838-34f1-4b28-ab69-c4c2a8b92594 88dc2c19a8619fe49d3c3b886735baa7 { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01833.RNA-Seq.T C3L-01833 UCEC RNA-Seq tumor CPT0099990001 20210714_P1_A6_WB7988_plate1_S6_R1_001.fastq.gz 7227952247 FASTQ unaligned CPTAC3 5bc8af46-2f1d-4e9f-96c1-31f1e0d584cb 70aa399ec00f6ac27ace2ab1b360a9b9 +C3L-01833.RNA-Seq.T C3L-01833 UCEC RNA-Seq tumor CPT0099990001 20210714_P1_A6_WB7988_plate1_S6_R2_001.fastq.gz 7547116685 FASTQ unaligned CPTAC3 5382cf03-129b-4518-a0e8-62e8897f4013 1fdb05b96132c0f136ffc71a7a99ea38 +C3L-01833.RNA-Seq.transcriptome.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0099990001 c5f6ad83-dc92-482e-8daf-2c1006693f03.rna_seq.transcriptome.gdc_realn.bam 8757240736 BAM transcriptome harmonized CPTAC3 72b5eefe-a827-4371-9a23-8346015d5e31 e2eba3be1088d073637138f9dbd50559 { 'aliquot_tag': 'ALQ_cf08021a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01833.RNA-Seq.transcriptome.T.hg38 C3L-01833 UCEC RNA-Seq tumor CPT0100010006 910b39e2-29f7-4cd5-90b6-318840595628.rna_seq.transcriptome.gdc_realn.bam 8391566878 BAM transcriptome harmonized CPTAC3 c661091b-e011-40d1-b837-f72430d15bf8 1467f1a4e68ce2e49d67758e09d494c1 { 'aliquot_tag': 'ALQ_dbbfc70b', 'gdc_sample_type': 'Primary Tumor' } C3L-01833.WGS.N C3L-01833 UCEC WGS blood_normal CPT0100050002 CPT0100050002.WholeGenome.RP-1303.bam 65311854468 BAM aligned CPTAC3 8df5e346-ef96-4b0e-b33a-08b3a205a41e 54069c42f48ac41235dc809e99cdd0f2 { 'aliquot_tag': 'ALQ_2952a5d2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01833.WGS.N.hg38 C3L-01833 UCEC WGS blood_normal CPT0100050002 82cd6dc4-3a55-4dda-bead-8ad25b691833_wgs_gdc_realn.bam 96105426093 BAM harmonized CPTAC3 5b726450-60f7-4028-8d82-fe1e6d026f4e 39d3ce83f15a11ea89d841854b30ed75 { 'aliquot_tag': 'ALQ_2952a5d2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01833.WGS.T C3L-01833 UCEC WGS tumor CPT0100010009 CPT0100010009.WholeGenome.RP-1303.bam 57633770826 BAM aligned CPTAC3 e903fcf2-11c8-418e-963a-d0a0875efd72 6fdd59ad154b8c96eed54b5e142f887a { 'aliquot_tag': 'ALQ_4b00da9a', 'gdc_sample_type': 'Primary Tumor' } @@ -8225,8 +8911,8 @@ C3L-01834.miRNA-Seq.T C3L-01834 GBM miRNA-Seq tumor CPT0104220005 181108_UNC31-K C3L-01834.miRNA-Seq.T.hg38 C3L-01834 GBM miRNA-Seq tumor CPT0104220005 64ad87dc-140c-4030-a5b6-eda1a9946f2f_mirnaseq_gdc_realn.bam 317703220 BAM harmonized CPTAC3 fda976ec-7f45-426b-9846-274b67db15e0 839e19cde7f656fd5523460555afb52f { 'aliquot_tag': 'ALQ_bc916979', 'gdc_sample_type': 'Primary Tumor' } C3L-01834.RNA-Seq.chimeric.T.hg38 C3L-01834 GBM RNA-Seq tumor CPT0104220005 574d58f5-dfcd-470d-a8fd-bf43b2996401.rna_seq.chimeric.gdc_realn.bam 107259703 BAM chimeric harmonized CPTAC3 98ffd472-6c70-461f-9998-b921d4107960 5fd75cc49d54c034c5ad146bb7195c61 { 'aliquot_tag': 'ALQ_bc916979', 'gdc_sample_type': 'Primary Tumor' } C3L-01834.RNA-Seq.genomic.T.hg38 C3L-01834 GBM RNA-Seq tumor CPT0104220005 574d58f5-dfcd-470d-a8fd-bf43b2996401.rna_seq.genomic.gdc_realn.bam 9284663508 BAM genomic harmonized CPTAC3 5aeb675f-28a9-48a9-bd27-3c503ab09fbd 3d64cd7f804b30e57b28c7a94f2289b3 { 'aliquot_tag': 'ALQ_bc916979', 'gdc_sample_type': 'Primary Tumor' } -C3L-01834.RNA-Seq.R1_L008.T C3L-01834 GBM RNA-Seq tumor CPT0104220005 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4205998241 FASTQ R1_L008 unaligned CPTAC3 bddce258-f479-4064-a83d-48bd5125aa0b 77e04d082814a887f1f71e4bad24219d { 'aliquot_tag': 'ALQ_bc916979', 'gdc_sample_type': 'Primary Tumor' } -C3L-01834.RNA-Seq.R2_L008.T C3L-01834 GBM RNA-Seq tumor CPT0104220005 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4708620005 FASTQ R2_L008 unaligned CPTAC3 0ee9ed9c-5178-49a5-b72c-b8ca17b7f496 1c9801c14c49eca03d9cf651e788f620 { 'aliquot_tag': 'ALQ_bc916979', 'gdc_sample_type': 'Primary Tumor' } +C3L-01834.RNA-Seq.R1_L008.T C3L-01834 GBM RNA-Seq tumor CPT0104220005 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4205998241 FASTQ R1_L008 unaligned CPTAC3 bddce258-f479-4064-a83d-48bd5125aa0b 77e04d082814a887f1f71e4bad24219d { 'aliquot_tag': 'ALQ_bc916979', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01834.RNA-Seq.R2_L008.T C3L-01834 GBM RNA-Seq tumor CPT0104220005 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4708620005 FASTQ R2_L008 unaligned CPTAC3 0ee9ed9c-5178-49a5-b72c-b8ca17b7f496 1c9801c14c49eca03d9cf651e788f620 { 'aliquot_tag': 'ALQ_bc916979', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-01834.RNA-Seq.transcriptome.T.hg38 C3L-01834 GBM RNA-Seq tumor CPT0104220005 574d58f5-dfcd-470d-a8fd-bf43b2996401.rna_seq.transcriptome.gdc_realn.bam 10850312525 BAM transcriptome harmonized CPTAC3 5b689fcc-2597-4e00-a891-896d3a4782cd 692ff95dc98ce75ffa2447a368a079e0 { 'aliquot_tag': 'ALQ_bc916979', 'gdc_sample_type': 'Primary Tumor' } C3L-01834.WGS.N C3L-01834 GBM WGS blood_normal CPT0105090002 CPT0105090002.WholeGenome.RP-1303.bam 58510830219 BAM aligned CPTAC3 f48150ec-f2a3-40a2-9d9b-52193cfb7574 3c0ea3caf8dcef90aadb5de8bafffbd1 { 'aliquot_tag': 'ALQ_be9a6774', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01834.WGS.N.hg38 C3L-01834 GBM WGS blood_normal CPT0105090002 7bd95971-f2a9-4d31-beb1-cb3aa2d72fb5_wgs_gdc_realn.bam 85614011228 BAM harmonized CPTAC3 758f901a-f6be-4f59-bc5d-50185c78a336 fd09145a1ed87d8e44b4d6334ab4a88c { 'aliquot_tag': 'ALQ_be9a6774', 'gdc_sample_type': 'Blood Derived Normal' } @@ -8235,16 +8921,16 @@ C3L-01834.WXS.N.hg38 C3L-01834 GBM WXS blood_normal CPT0105090002 7bd95971-f2a9- C3L-01836.DUP_2282a3ba.miRNA-Seq.T C3L-01836 CCRCC miRNA-Seq tumor CPT0086860006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTATAC_S10_L004_R1_001.unaln.bam 219403427 BAM unaligned CPTAC3 2d61528b-198d-4dac-8a54-a6d1e4716a81 4abe6fabe89e020a6a57b0db404e5769 { 'aliquot_tag': 'DUP_2282a3ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01836.DUP_2282a3ba.miRNA-Seq.T.hg38 C3L-01836 CCRCC miRNA-Seq tumor CPT0086860006 865e1117-eb6f-48f0-960c-c540c4a83445_mirnaseq_gdc_realn.bam 246767334 BAM harmonized CPTAC3 308077ab-01a2-4b4d-899f-54d6c7ca644e 9f10b1adb864e5a4b68809067c305087 { 'aliquot_tag': 'DUP_2282a3ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01836.DUP_2282a3ba.RNA-Seq.chimeric.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 eb749079-7b1b-45fc-a926-630b73a6ce1b.rna_seq.chimeric.gdc_realn.bam 134205822 BAM chimeric harmonized CPTAC3 03add013-04e7-40ac-a1e5-caa00da4474a 623a33c5d8c65c5a7c19fb1d2fe348aa { 'aliquot_tag': 'DUP_2282a3ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01836.DUP_2282a3ba.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 eb749079-7b1b-45fc-a926-630b73a6ce1b.rna_seq.genomic.gdc_realn.bam 8451361187 BAM genomic harmonized CPTAC3 a79df195-ac55-4d8c-a751-b04dec774ef9 0c16b459c496d207d0d4e532cf466c34 { 'aliquot_tag': 'DUP_2282a3ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01836.DUP_2282a3ba.RNA-Seq.R1_L005.T C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R1_001.fastq.gz 4097422514 FASTQ R1_L005 unaligned CPTAC3 768aa7e6-69e3-4feb-8b45-1c6858776a7d 9177f43c3205b114180a7fddc4cb4599 { 'aliquot_tag': 'DUP_2282a3ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01836.DUP_2282a3ba.RNA-Seq.R2_L005.T C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R2_001.fastq.gz 4752243493 FASTQ R2_L005 unaligned CPTAC3 859c5418-0c86-4271-b106-c1baebf4cbb7 e4aebe9a4e8aed197423f9fce1fe1475 { 'aliquot_tag': 'DUP_2282a3ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01836.DUP_2282a3ba.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 eb749079-7b1b-45fc-a926-630b73a6ce1b.rna_seq.genomic.gdc_realn.bam 8451361187 BAM genomic harmonized CPTAC3 8a02f335-5824-4c70-a010-62b282d536a2 0c16b459c496d207d0d4e532cf466c34 { 'aliquot_tag': 'DUP_2282a3ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01836.DUP_2282a3ba.RNA-Seq.R1_L005.T C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R1_001.fastq.gz 4097422514 FASTQ R1_L005 unaligned CPTAC3 768aa7e6-69e3-4feb-8b45-1c6858776a7d 9177f43c3205b114180a7fddc4cb4599 { 'aliquot_tag': 'DUP_2282a3ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3L-01836.DUP_2282a3ba.RNA-Seq.R2_L005.T C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R2_001.fastq.gz 4752243493 FASTQ R2_L005 unaligned CPTAC3 859c5418-0c86-4271-b106-c1baebf4cbb7 e4aebe9a4e8aed197423f9fce1fe1475 { 'aliquot_tag': 'DUP_2282a3ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3L-01836.DUP_2282a3ba.RNA-Seq.transcriptome.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086860006 eb749079-7b1b-45fc-a926-630b73a6ce1b.rna_seq.transcriptome.gdc_realn.bam 12185116241 BAM transcriptome harmonized CPTAC3 15ac5439-95a2-420f-b2a2-edb66874843c 0b7b4de3e399beaf3f91df1f782a0d98 { 'aliquot_tag': 'DUP_2282a3ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01836.DUP_9db21ddb.miRNA-Seq.T C3L-01836 CCRCC miRNA-Seq tumor CPT0086880006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTCAGA_S11_L004_R1_001.unaln.bam 291075684 BAM unaligned CPTAC3 253cf67e-a8ac-4980-8f79-82b2e6774950 e7a49ca00ef4139c45581378431659f5 { 'aliquot_tag': 'DUP_9db21ddb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01836.DUP_9db21ddb.miRNA-Seq.T.hg38 C3L-01836 CCRCC miRNA-Seq tumor CPT0086880006 a3866871-2b4d-4e46-a658-3ff43ed80465_mirnaseq_gdc_realn.bam 327307751 BAM harmonized CPTAC3 5bda4365-d781-49bb-9d2d-b0e84848e3b2 154fee12fe0b7de4581267cb54844e84 { 'aliquot_tag': 'DUP_9db21ddb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01836.DUP_9db21ddb.RNA-Seq.chimeric.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 4fd7887c-54b6-481a-9bb9-17bf56835b93.rna_seq.chimeric.gdc_realn.bam 119558976 BAM chimeric harmonized CPTAC3 82634c1f-66fb-4eb1-b98e-2d33af73389d 80653a3235d0d0b8762a29e0164af2e1 { 'aliquot_tag': 'DUP_9db21ddb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01836.DUP_9db21ddb.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 4fd7887c-54b6-481a-9bb9-17bf56835b93.rna_seq.genomic.gdc_realn.bam 8919727513 BAM genomic harmonized CPTAC3 6d8d81e8-1744-4b4b-a464-47cc917b98e4 1843b028d7caa6c5c2e44cf31b73f2e9 { 'aliquot_tag': 'DUP_9db21ddb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01836.DUP_9db21ddb.RNA-Seq.R1_L005.T C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGGACAAC-TCCGGATT_S17_L005_R1_001.fastq.gz 4285952667 FASTQ R1_L005 unaligned CPTAC3 29ae1811-9252-44f8-aee8-7419a6f881f0 36543875e7c1859bdebe2ab624f9fb1b { 'aliquot_tag': 'DUP_9db21ddb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01836.DUP_9db21ddb.RNA-Seq.R2_L005.T C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGGACAAC-TCCGGATT_S17_L005_R2_001.fastq.gz 5055432049 FASTQ R2_L005 unaligned CPTAC3 17b69746-ad1c-4716-9bc4-ff423e8bbc65 f3911931c4097bdd20b234f1d816c2af { 'aliquot_tag': 'DUP_9db21ddb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01836.DUP_9db21ddb.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 4fd7887c-54b6-481a-9bb9-17bf56835b93.rna_seq.genomic.gdc_realn.bam 8919727513 BAM genomic harmonized CPTAC3 400ae53f-c8ba-463c-8570-01369329b98b 1843b028d7caa6c5c2e44cf31b73f2e9 { 'aliquot_tag': 'DUP_9db21ddb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01836.DUP_9db21ddb.RNA-Seq.R1_L005.T C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGGACAAC-TCCGGATT_S17_L005_R1_001.fastq.gz 4285952667 FASTQ R1_L005 unaligned CPTAC3 29ae1811-9252-44f8-aee8-7419a6f881f0 36543875e7c1859bdebe2ab624f9fb1b { 'aliquot_tag': 'DUP_9db21ddb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3L-01836.DUP_9db21ddb.RNA-Seq.R2_L005.T C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGGACAAC-TCCGGATT_S17_L005_R2_001.fastq.gz 5055432049 FASTQ R2_L005 unaligned CPTAC3 17b69746-ad1c-4716-9bc4-ff423e8bbc65 f3911931c4097bdd20b234f1d816c2af { 'aliquot_tag': 'DUP_9db21ddb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3L-01836.DUP_9db21ddb.RNA-Seq.transcriptome.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086880006 4fd7887c-54b6-481a-9bb9-17bf56835b93.rna_seq.transcriptome.gdc_realn.bam 12824461403 BAM transcriptome harmonized CPTAC3 01ec33e8-1758-48e0-a23c-8756a37c3dcd 10e89d3ccbad6e58712e2c7b7dd97a38 { 'aliquot_tag': 'DUP_9db21ddb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01836.DUP_b23dbe2b.MethArray.Green.T C3L-01836 CCRCC Methylation Array tumor CPT0086860009 204372030074_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0ffe1538-3497-4520-93ca-12ac44151a15 d615c52d695266737cdeea8f9b103b04 { 'aliquot_tag': 'DUP_b23dbe2b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01836.DUP_b23dbe2b.MethArray.Red.T C3L-01836 CCRCC Methylation Array tumor CPT0086860009 204372030074_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 058b7baf-b6a8-4904-a13c-6f32d3cc9d7b 1027929d67ee4e34fed2d9e081579b26 { 'aliquot_tag': 'DUP_b23dbe2b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -8268,12 +8954,12 @@ C3L-01836.miRNA-Seq.T C3L-01836 CCRCC miRNA-Seq tumor CPT0086870006 181108_UNC31 C3L-01836.miRNA-Seq.T.hg38 C3L-01836 CCRCC miRNA-Seq tumor CPT0086870006 b3fdbe20-e876-440c-b8bb-0be8e6c9fe45_mirnaseq_gdc_realn.bam 251310992 BAM harmonized CPTAC3 dcebd156-4fda-4bf7-b632-beb00fa63347 16fd776ddbadca96c4cbe6d3acea6f5f { 'aliquot_tag': 'ALQ_1fe28a0a', 'gdc_sample_type': 'Primary Tumor' } C3L-01836.RNA-Seq.chimeric.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 91b2b348-41f2-40df-9106-7a6722d6a333.rna_seq.chimeric.gdc_realn.bam 81264706 BAM chimeric harmonized CPTAC3 ea40b216-fba2-4f3e-bd18-b6086a86da5a cc5b4d497d40a66818d184845c1e563b { 'aliquot_tag': 'ALQ_a0d2346b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01836.RNA-Seq.chimeric.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 4f51ab27-6caf-4dd1-bdf8-b435505cd2dd.rna_seq.chimeric.gdc_realn.bam 31913672 BAM chimeric harmonized CPTAC3 9ec9fb52-0db0-4426-b1d5-509ee762a225 b3146a5629a2b1d1d1204849221b92b3 { 'aliquot_tag': 'ALQ_1fe28a0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01836.RNA-Seq.genomic.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 91b2b348-41f2-40df-9106-7a6722d6a333.rna_seq.genomic.gdc_realn.bam 6927250969 BAM genomic harmonized CPTAC3 e418b12b-25a5-4f3c-b989-800ff3d3c670 8e0ccd68095e1c5a2518ae9de32693c8 { 'aliquot_tag': 'ALQ_a0d2346b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01836.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 4f51ab27-6caf-4dd1-bdf8-b435505cd2dd.rna_seq.genomic.gdc_realn.bam 6926457769 BAM genomic harmonized CPTAC3 6f5ee7c6-f5f4-4a70-bedc-56dccf5fb1d5 3b4107f7e4b870279fda63fae9850475 { 'aliquot_tag': 'ALQ_1fe28a0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01836.RNA-Seq.R1_L002.A C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R1_001.fastq.gz 3550419957 FASTQ R1_L002 unaligned CPTAC3 2aeeecab-38f1-4ac1-b075-46ae5151bd1a 2694dbf6dcec1866f50ba4bcc74c3cc6 { 'aliquot_tag': 'ALQ_a0d2346b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01836.RNA-Seq.R1_L006.T C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R1_001.fastq.gz 3635126627 FASTQ R1_L006 unaligned CPTAC3 a3e2839a-6453-485b-9a7d-e085f009d98a 21587f001b00b3d8bb52502ed93e85fb { 'aliquot_tag': 'ALQ_1fe28a0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01836.RNA-Seq.R2_L002.A C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R2_001.fastq.gz 3690039175 FASTQ R2_L002 unaligned CPTAC3 9c8f1419-35ba-4a6f-b41f-57473a598e05 0cdbc1a4dcae435ef2e5c269f9352657 { 'aliquot_tag': 'ALQ_a0d2346b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01836.RNA-Seq.R2_L006.T C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R2_001.fastq.gz 3808781355 FASTQ R2_L006 unaligned CPTAC3 9bcfe727-df26-44e6-89dd-9cd978ec3659 52964799643cff572b7aafa08ebc261a { 'aliquot_tag': 'ALQ_1fe28a0a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01836.RNA-Seq.genomic.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 91b2b348-41f2-40df-9106-7a6722d6a333.rna_seq.genomic.gdc_realn.bam 6927250969 BAM genomic harmonized CPTAC3 21f809f4-0c1f-44f5-a979-f3c89699c9a8 8e0ccd68095e1c5a2518ae9de32693c8 { 'aliquot_tag': 'ALQ_a0d2346b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01836.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 4f51ab27-6caf-4dd1-bdf8-b435505cd2dd.rna_seq.genomic.gdc_realn.bam 6926457769 BAM genomic harmonized CPTAC3 2285bc37-7e20-4da5-9548-79aec0eb6b2e 3b4107f7e4b870279fda63fae9850475 { 'aliquot_tag': 'ALQ_1fe28a0a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01836.RNA-Seq.R1_L002.A C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R1_001.fastq.gz 3550419957 FASTQ R1_L002 unaligned CPTAC3 2aeeecab-38f1-4ac1-b075-46ae5151bd1a 2694dbf6dcec1866f50ba4bcc74c3cc6 { 'aliquot_tag': 'ALQ_a0d2346b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01836.RNA-Seq.R1_L006.T C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R1_001.fastq.gz 3635126627 FASTQ R1_L006 unaligned CPTAC3 a3e2839a-6453-485b-9a7d-e085f009d98a 21587f001b00b3d8bb52502ed93e85fb { 'aliquot_tag': 'ALQ_1fe28a0a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01836.RNA-Seq.R2_L002.A C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R2_001.fastq.gz 3690039175 FASTQ R2_L002 unaligned CPTAC3 9c8f1419-35ba-4a6f-b41f-57473a598e05 0cdbc1a4dcae435ef2e5c269f9352657 { 'aliquot_tag': 'ALQ_a0d2346b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01836.RNA-Seq.R2_L006.T C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R2_001.fastq.gz 3808781355 FASTQ R2_L006 unaligned CPTAC3 9bcfe727-df26-44e6-89dd-9cd978ec3659 52964799643cff572b7aafa08ebc261a { 'aliquot_tag': 'ALQ_1fe28a0a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-01836.RNA-Seq.transcriptome.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal CPT0086890006 91b2b348-41f2-40df-9106-7a6722d6a333.rna_seq.transcriptome.gdc_realn.bam 8595903548 BAM transcriptome harmonized CPTAC3 44feda4e-11bb-468a-9e70-dbefc99518d1 14746574bee23bcfc13fa6a48cebfa39 { 'aliquot_tag': 'ALQ_a0d2346b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01836.RNA-Seq.transcriptome.T.hg38 C3L-01836 CCRCC RNA-Seq tumor CPT0086870006 4f51ab27-6caf-4dd1-bdf8-b435505cd2dd.rna_seq.transcriptome.gdc_realn.bam 10457787471 BAM transcriptome harmonized CPTAC3 b3180315-db0a-44fb-8a65-d77c1e5945cc dd84357d5a0bbb5dbb753d9b84e9a264 { 'aliquot_tag': 'ALQ_1fe28a0a', 'gdc_sample_type': 'Primary Tumor' } C3L-01836.WGS.A C3L-01836 CCRCC WGS tissue_normal CPT0086890009 CPT0086890009.WholeGenome.RP-1303.bam 57254202470 BAM aligned CPTAC3 579790bd-9932-4308-a476-2423456bd269 7c9fabafc9d0323aa52e8d540086848b { 'aliquot_tag': 'ALQ_306d29fa', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -8293,9 +8979,9 @@ C3L-01838.MethArray.Red.T C3L-01838 LSCC Methylation Array tumor CPT0091820009 2 C3L-01838.miRNA-Seq.T C3L-01838 LSCC miRNA-Seq tumor CPT0091820006 180828_UNC32-K00270_0112_AHWTLNBBXX_GGCTAC_S3_L006_R1_001.unaln.bam 233166935 BAM unaligned CPTAC3 d2792c66-ec60-4dc7-b24f-75f62d3e72e8 a36d72d72ad2417bd352dc6bb64d3360 { 'aliquot_tag': 'ALQ_de0f3b6a', 'gdc_sample_type': 'Primary Tumor' } C3L-01838.miRNA-Seq.T.hg38 C3L-01838 LSCC miRNA-Seq tumor CPT0091820006 f349a9e2-4d76-458c-8889-4ba8d4baadbc_mirnaseq_gdc_realn.bam 262973659 BAM harmonized CPTAC3 026ec557-4962-4393-91b6-fee194896444 985ce00a1285d7f5d785102a8215ed54 { 'aliquot_tag': 'ALQ_de0f3b6a', 'gdc_sample_type': 'Primary Tumor' } C3L-01838.RNA-Seq.chimeric.T.hg38 C3L-01838 LSCC RNA-Seq tumor CPT0091820006 f9806a31-d0e2-4bea-858b-3934067ba2f4.rna_seq.chimeric.gdc_realn.bam 53299158 BAM chimeric harmonized CPTAC3 4cb42143-9348-4ce2-99fb-84b00d1c6e35 3112735c2858f99ccf5cb88ad50c88be { 'aliquot_tag': 'ALQ_de0f3b6a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01838.RNA-Seq.genomic.T.hg38 C3L-01838 LSCC RNA-Seq tumor CPT0091820006 f9806a31-d0e2-4bea-858b-3934067ba2f4.rna_seq.genomic.gdc_realn.bam 10812141007 BAM genomic harmonized CPTAC3 26f58f83-7ef8-472b-8c9b-2bb2a36be73a 51c6b39fc144d62ae745c943beeb378f { 'aliquot_tag': 'ALQ_de0f3b6a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01838.RNA-Seq.R1_L008.T C3L-01838 LSCC RNA-Seq tumor CPT0091820006 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L008_R1_001.fastq.gz 4492368263 FASTQ R1_L008 unaligned CPTAC3 ae3a8cb3-0eee-4094-a16e-f943a1c700ea 409c103b9709861f7d70a0965529a851 { 'aliquot_tag': 'ALQ_de0f3b6a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01838.RNA-Seq.R2_L008.T C3L-01838 LSCC RNA-Seq tumor CPT0091820006 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L008_R2_001.fastq.gz 5173657114 FASTQ R2_L008 unaligned CPTAC3 9a365c54-2bdb-472a-9800-389b12714b78 cdce14b60208e7f64ed4cc5cebee537e { 'aliquot_tag': 'ALQ_de0f3b6a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01838.RNA-Seq.genomic.T.hg38 C3L-01838 LSCC RNA-Seq tumor CPT0091820006 f9806a31-d0e2-4bea-858b-3934067ba2f4.rna_seq.genomic.gdc_realn.bam 10812141007 BAM genomic harmonized CPTAC3 aabba18e-8308-4a90-8f92-355d3bd9f299 51c6b39fc144d62ae745c943beeb378f { 'aliquot_tag': 'ALQ_de0f3b6a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01838.RNA-Seq.R1_L008.T C3L-01838 LSCC RNA-Seq tumor CPT0091820006 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L008_R1_001.fastq.gz 4492368263 FASTQ R1_L008 unaligned CPTAC3 ae3a8cb3-0eee-4094-a16e-f943a1c700ea 409c103b9709861f7d70a0965529a851 { 'aliquot_tag': 'ALQ_de0f3b6a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01838.RNA-Seq.R2_L008.T C3L-01838 LSCC RNA-Seq tumor CPT0091820006 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L008_R2_001.fastq.gz 5173657114 FASTQ R2_L008 unaligned CPTAC3 9a365c54-2bdb-472a-9800-389b12714b78 cdce14b60208e7f64ed4cc5cebee537e { 'aliquot_tag': 'ALQ_de0f3b6a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-01838.RNA-Seq.transcriptome.T.hg38 C3L-01838 LSCC RNA-Seq tumor CPT0091820006 f9806a31-d0e2-4bea-858b-3934067ba2f4.rna_seq.transcriptome.gdc_realn.bam 13325369178 BAM transcriptome harmonized CPTAC3 70954a78-d547-430c-a617-0106ad06674d b21aab8d2e1fb99dd0f47930a782f2e8 { 'aliquot_tag': 'ALQ_de0f3b6a', 'gdc_sample_type': 'Primary Tumor' } C3L-01838.WGS.N C3L-01838 LSCC WGS blood_normal CPT0093670002 CPT0093670002.WholeGenome.RP-1303.bam 81248814771 BAM aligned CPTAC3 fcd4cd9a-1955-45d4-b3d2-55fc58e4f675 00cc35627c266b97b1377fa4041561a3 { 'aliquot_tag': 'ALQ_bc17005a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01838.WGS.N.hg38 C3L-01838 LSCC WGS blood_normal CPT0093670002 c4403a57-0f50-47aa-8620-5271d576d48b_wgs_gdc_realn.bam 120173391896 BAM harmonized CPTAC3 803648bc-6df2-4e23-a5aa-16f4425989e8 97826738d87ca00e8eff5228afcd5eb5 { 'aliquot_tag': 'ALQ_bc17005a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -8311,13 +8997,16 @@ C3L-01840.MethArray.Green.T C3L-01840 UCEC Methylation Array tumor CPT0091990009 C3L-01840.MethArray.Red.T C3L-01840 UCEC Methylation Array tumor CPT0091990009 202234360025_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 1b77be27-d938-4d22-8275-1538bcd305b3 a1b445701dcac1006189f4942e21e61c { 'aliquot_tag': 'ALQ_f23cc44f', 'gdc_sample_type': 'Primary Tumor' } C3L-01840.miRNA-Seq.T C3L-01840 UCEC miRNA-Seq tumor CPT0091990006 180828_UNC32-K00270_0112_AHWTLNBBXX_AGTTCC_S6_L006_R1_001.unaln.bam 225668641 BAM unaligned CPTAC3 7616cd16-5a17-44a5-a524-72a5bf2f4c5c a0d45909240f92319d4a5ed52332e2d7 { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor' } C3L-01840.miRNA-Seq.T.hg38 C3L-01840 UCEC miRNA-Seq tumor CPT0091990006 253e0dee-58fa-4e26-81cd-1368ea66d9b6_mirnaseq_gdc_realn.bam 247236043 BAM harmonized CPTAC3 5a025ce8-5b98-400b-85b7-96c9113f0a9e 1447808b271533bced7c594e245426d9 { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor' } -C3L-01840.RNA-Seq.chimeric.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 ba559b0a-92be-42de-9789-715061ae6e01.rna_seq.chimeric.gdc_realn.bam 35423258 BAM chimeric harmonized CPTAC3 bc9c065a-18e6-4d20-ab03-2c7237ed80d1 890f1d4409144756687f8d599262da9d { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor' } -C3L-01840.RNA-Seq.genomic.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 ba559b0a-92be-42de-9789-715061ae6e01.rna_seq.genomic.gdc_realn.bam 12689747833 BAM genomic harmonized CPTAC3 e75b4a23-e257-42af-8d41-77d32d99efbd e4ba0e510938cd04438135e7e370d185 { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor' } -C3L-01840.RNA-Seq.R1_L007.T C3L-01840 UCEC RNA-Seq tumor CPT0091990006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L007_R1_001.fastq.gz 4630240820 FASTQ R1_L007 unaligned CPTAC3 0453fd6a-3eb4-45d5-95c6-85f9496c7816 1699f648db9048e19858ab1cc604bbdb { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor' } -C3L-01840.RNA-Seq.R1_.T C3L-01840 UCEC RNA-Seq tumor CPT0350040001 20210729_P3_F9_WB7988-Plate3_S69_R1_001.fastq.gz 7209610000 FASTQ R1_ unaligned CPTAC3 79d96fc6-28e8-4eec-9bb2-f63b5f8bb671 c47b389172290554f7db21b6e4813528 { 'aliquot_tag': 'ALQ_eb2dfb3a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01840.RNA-Seq.R2_L007.T C3L-01840 UCEC RNA-Seq tumor CPT0091990006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L007_R2_001.fastq.gz 4980375095 FASTQ R2_L007 unaligned CPTAC3 c597fc23-4760-408f-822f-6ae417004de0 b86ab7726dd458fb446f3891c09c963e { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor' } -C3L-01840.RNA-Seq.R2_.T C3L-01840 UCEC RNA-Seq tumor CPT0350040001 20210729_P3_F9_WB7988-Plate3_S69_R2_001.fastq.gz 7494257986 FASTQ R2_ unaligned CPTAC3 75d39f00-6ffd-48ac-a597-817d1d48a87f fa137b763a241fb7f7dce97388fb2236 { 'aliquot_tag': 'ALQ_eb2dfb3a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01840.RNA-Seq.transcriptome.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 ba559b0a-92be-42de-9789-715061ae6e01.rna_seq.transcriptome.gdc_realn.bam 8928642773 BAM transcriptome harmonized CPTAC3 b874aa5f-4d02-4db6-a7ad-eddf14d10836 bd091b1e4c22c53f2f899393bcd5c717 { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor' } +C3L-01840.RNA-Seq.chimeric.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 3fdb24a3-7a43-4fed-8d7f-53b4978cf006.rna_seq.chimeric.gdc_realn.bam 35425210 BAM chimeric harmonized CPTAC3 3331c1f6-20b6-4e95-849b-f81497ef5b73 5d7da8a4a3f116b99d48a6d89729bd4e { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor' } +C3L-01840.RNA-Seq.chimeric.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0350040001 e76c46a3-0540-4a56-babe-20c56b97edb5.rna_seq.chimeric.gdc_realn.bam 301898505 BAM chimeric harmonized CPTAC3 dba5816f-93e9-4b59-a6ff-ce7fdabc34e8 a27bb05b385486f92cc782a7d48f3f0f { 'aliquot_tag': 'ALQ_eb2dfb3a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01840.RNA-Seq.genomic.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 3fdb24a3-7a43-4fed-8d7f-53b4978cf006.rna_seq.genomic.gdc_realn.bam 12691718143 BAM genomic harmonized CPTAC3 fc92c486-a111-4c25-9b77-f23185acc501 23a46d513d0ab3231de26b772855325a { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor' } +C3L-01840.RNA-Seq.genomic.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0350040001 e76c46a3-0540-4a56-babe-20c56b97edb5.rna_seq.genomic.gdc_realn.bam 12205925575 BAM genomic harmonized CPTAC3 f8bb1dcb-08bd-4ec1-be7e-6324b951960b 8befb16ab3371072f24020b862834047 { 'aliquot_tag': 'ALQ_eb2dfb3a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01840.RNA-Seq.R1_L007.T C3L-01840 UCEC RNA-Seq tumor CPT0091990006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L007_R1_001.fastq.gz 4630240820 FASTQ R1_L007 unaligned CPTAC3 0453fd6a-3eb4-45d5-95c6-85f9496c7816 1699f648db9048e19858ab1cc604bbdb { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01840.RNA-Seq.R2_L007.T C3L-01840 UCEC RNA-Seq tumor CPT0091990006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L007_R2_001.fastq.gz 4980375095 FASTQ R2_L007 unaligned CPTAC3 c597fc23-4760-408f-822f-6ae417004de0 b86ab7726dd458fb446f3891c09c963e { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-01840.RNA-Seq.T C3L-01840 UCEC RNA-Seq tumor CPT0350040001 20210729_P3_F9_WB7988-Plate3_S69_R1_001.fastq.gz 7209610000 FASTQ unaligned CPTAC3 79d96fc6-28e8-4eec-9bb2-f63b5f8bb671 c47b389172290554f7db21b6e4813528 +C3L-01840.RNA-Seq.T C3L-01840 UCEC RNA-Seq tumor CPT0350040001 20210729_P3_F9_WB7988-Plate3_S69_R2_001.fastq.gz 7494257986 FASTQ unaligned CPTAC3 75d39f00-6ffd-48ac-a597-817d1d48a87f fa137b763a241fb7f7dce97388fb2236 +C3L-01840.RNA-Seq.transcriptome.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0091990006 3fdb24a3-7a43-4fed-8d7f-53b4978cf006.rna_seq.transcriptome.gdc_realn.bam 10193459073 BAM transcriptome harmonized CPTAC3 c782b126-d765-4f89-8c6f-6be6feb9ffb3 daf35b8712a81718983b7fd828c87c43 { 'aliquot_tag': 'ALQ_6283d9de', 'gdc_sample_type': 'Primary Tumor' } +C3L-01840.RNA-Seq.transcriptome.T.hg38 C3L-01840 UCEC RNA-Seq tumor CPT0350040001 e76c46a3-0540-4a56-babe-20c56b97edb5.rna_seq.transcriptome.gdc_realn.bam 6122928045 BAM transcriptome harmonized CPTAC3 8f24fc44-4fb9-4662-8d87-df3f11a7a761 9de31fd28742fb3f6bc00df2c26c384d { 'aliquot_tag': 'ALQ_eb2dfb3a', 'gdc_sample_type': 'Primary Tumor' } C3L-01840.WGS.N C3L-01840 UCEC WGS blood_normal CPT0093700002 CPT0093700002.WholeGenome.RP-1303.bam 59905144586 BAM aligned CPTAC3 31866f3a-8bf4-4379-8f0d-92bb5e249fef 33ab0d1b47f7e465540b210486eca9be { 'aliquot_tag': 'ALQ_c56b0fef', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01840.WGS.N.hg38 C3L-01840 UCEC WGS blood_normal CPT0093700002 bd1c53fe-d5ab-423d-96ba-114e2b5f8b1a_wgs_gdc_realn.bam 87572684580 BAM harmonized CPTAC3 832dd017-471c-48ab-8b81-1d4ee65f4a4b 2aabdb017a96cf672dbb2c45b6cd9806 { 'aliquot_tag': 'ALQ_c56b0fef', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01840.WGS.T C3L-01840 UCEC WGS tumor CPT0091990009 CPT0091990009.WholeGenome.RP-1303.bam 59655339206 BAM aligned CPTAC3 7d35187b-5f0f-476b-bd17-7a53d67cde34 7cd2f8ae588fc2758b7c457673ede1fe { 'aliquot_tag': 'ALQ_f23cc44f', 'gdc_sample_type': 'Primary Tumor' } @@ -8329,9 +9018,9 @@ C3L-01840.WXS.T.hg38 C3L-01840 UCEC WXS tumor CPT0091990009 b5e15343-b733-4c14-8 C3L-01861.DUP_4cc1a30.miRNA-Seq.T C3L-01861 CCRCC miRNA-Seq tumor CPT0092280006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTAGCT_S9_L001_R1_001.unaln.bam 315870709 BAM unaligned CPTAC3 73a38291-2a86-46da-9627-836d76c79ce3 5e8b3d138cf8a1047821f36cb684024b { 'aliquot_tag': 'DUP_4cc1a30', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01861.DUP_4cc1a30.miRNA-Seq.T.hg38 C3L-01861 CCRCC miRNA-Seq tumor CPT0092280006 cb298910-251c-4263-aa0c-954590b3b533_mirnaseq_gdc_realn.bam 348131454 BAM harmonized CPTAC3 6ebeb278-c9b7-46dc-965b-6e4f61631b1c b6744e6383f4d86609ea39fe12a4b32f { 'aliquot_tag': 'DUP_4cc1a30', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01861.DUP_4cc1a30.RNA-Seq.chimeric.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 ed0ba6f7-d6f5-4ac6-8a99-9449913b3e48.rna_seq.chimeric.gdc_realn.bam 51456700 BAM chimeric harmonized CPTAC3 2cc3ac24-cf16-4234-baa9-ebb44e16635b 8e94fe45b6cdef4870c65dccd3ce06cd { 'aliquot_tag': 'DUP_4cc1a30', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01861.DUP_4cc1a30.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 ed0ba6f7-d6f5-4ac6-8a99-9449913b3e48.rna_seq.genomic.gdc_realn.bam 7454009525 BAM genomic harmonized CPTAC3 5ad922b7-88bf-408e-acea-e0583d4ccde0 5875a1db7d51a10f6af48dfc6000c3d9 { 'aliquot_tag': 'DUP_4cc1a30', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01861.DUP_4cc1a30.RNA-Seq.R1_L008.T C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAACCGCG-TGACCTTA_S31_L008_R1_001.fastq.gz 3603210624 FASTQ R1_L008 unaligned CPTAC3 e05ca40e-28a6-4ed3-acad-dcaccee06f9f 6f494948de699e7f20d4e4a7b5f325d8 { 'aliquot_tag': 'DUP_4cc1a30', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01861.DUP_4cc1a30.RNA-Seq.R2_L008.T C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAACCGCG-TGACCTTA_S31_L008_R2_001.fastq.gz 4096244295 FASTQ R2_L008 unaligned CPTAC3 bcfffcc7-8d6f-4195-825e-48d10cbc2ad5 4e5d8dd50c0a9d7040a08709edc8b995 { 'aliquot_tag': 'DUP_4cc1a30', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01861.DUP_4cc1a30.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 ed0ba6f7-d6f5-4ac6-8a99-9449913b3e48.rna_seq.genomic.gdc_realn.bam 7454009525 BAM genomic harmonized CPTAC3 02b7d40f-e69f-4744-b5c6-ac3ad03db668 5875a1db7d51a10f6af48dfc6000c3d9 { 'aliquot_tag': 'DUP_4cc1a30', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01861.DUP_4cc1a30.RNA-Seq.R1_L008.T C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAACCGCG-TGACCTTA_S31_L008_R1_001.fastq.gz 3603210624 FASTQ R1_L008 unaligned CPTAC3 e05ca40e-28a6-4ed3-acad-dcaccee06f9f 6f494948de699e7f20d4e4a7b5f325d8 { 'aliquot_tag': 'DUP_4cc1a30', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3L-01861.DUP_4cc1a30.RNA-Seq.R2_L008.T C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 200519_UNC31-K00269_0280_BHHKGNBBXY_GAACCGCG-TGACCTTA_S31_L008_R2_001.fastq.gz 4096244295 FASTQ R2_L008 unaligned CPTAC3 bcfffcc7-8d6f-4195-825e-48d10cbc2ad5 4e5d8dd50c0a9d7040a08709edc8b995 { 'aliquot_tag': 'DUP_4cc1a30', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3L-01861.DUP_4cc1a30.RNA-Seq.transcriptome.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092280006 ed0ba6f7-d6f5-4ac6-8a99-9449913b3e48.rna_seq.transcriptome.gdc_realn.bam 9642037744 BAM transcriptome harmonized CPTAC3 f9fcb7ca-55a9-4a5e-9ef2-d1a9f25802fb 55b19746d6375beed05ece55914b6bcf { 'aliquot_tag': 'DUP_4cc1a30', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01861.DUP_6f5f9fc5.MethArray.Green.T C3L-01861 CCRCC Methylation Array tumor CPT0092300009 204367460011_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 53730193-2e1b-4f6b-abeb-e59fd4f35588 53b2fb80eafb45d760d6a1e94c774b7f { 'aliquot_tag': 'DUP_6f5f9fc5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01861.DUP_6f5f9fc5.MethArray.Red.T C3L-01861 CCRCC Methylation Array tumor CPT0092300009 204367460011_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 260c9ecb-f5a1-4371-af85-6fb8e6417def b4ad457112d9240ce8e117dc00eb8cc4 { 'aliquot_tag': 'DUP_6f5f9fc5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -8348,9 +9037,9 @@ C3L-01861.DUP_947307a1.WXS.T.hg38 C3L-01861 CCRCC WXS tumor CPT0092280009 5c4f72 C3L-01861.DUP_ffe08254.miRNA-Seq.T C3L-01861 CCRCC miRNA-Seq tumor CPT0092300006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTATAC_S10_L001_R1_001.unaln.bam 234550563 BAM unaligned CPTAC3 cc0a8d45-43d8-4734-a275-2e8e7d5d9fa3 fea748c721e314f9d1e401311c0d1d38 { 'aliquot_tag': 'DUP_ffe08254', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01861.DUP_ffe08254.miRNA-Seq.T.hg38 C3L-01861 CCRCC miRNA-Seq tumor CPT0092300006 6ea257b2-6e28-40b8-8560-9fda136b89ad_mirnaseq_gdc_realn.bam 259073209 BAM harmonized CPTAC3 11eb2f89-9378-4184-8b05-695dc9cc9d79 bba8757e736b63b106216ffc3ad9aa2b { 'aliquot_tag': 'DUP_ffe08254', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01861.DUP_ffe08254.RNA-Seq.chimeric.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 299c288d-4f31-43f3-8720-a8b5848e8fc0.rna_seq.chimeric.gdc_realn.bam 44867305 BAM chimeric harmonized CPTAC3 7186d3da-6de8-4435-986e-78a98b3b094d 208ab766bc70233e9249eb56a51bb861 { 'aliquot_tag': 'DUP_ffe08254', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01861.DUP_ffe08254.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 299c288d-4f31-43f3-8720-a8b5848e8fc0.rna_seq.genomic.gdc_realn.bam 7872779832 BAM genomic harmonized CPTAC3 7f558b89-39a8-46fc-b5da-28767259979e b9522af5982f6f24d458041c8f2c2e0d { 'aliquot_tag': 'DUP_ffe08254', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01861.DUP_ffe08254.RNA-Seq.R1_L008.T C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTCACCAA-CTAGGCAA_S30_L008_R1_001.fastq.gz 3568920690 FASTQ R1_L008 unaligned CPTAC3 1ad2341c-5b62-4ec7-b0da-7b417d931840 61fcdc951d6b7dbff76b9e69546b149b { 'aliquot_tag': 'DUP_ffe08254', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3L-01861.DUP_ffe08254.RNA-Seq.R2_L008.T C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTCACCAA-CTAGGCAA_S30_L008_R2_001.fastq.gz 4321608798 FASTQ R2_L008 unaligned CPTAC3 0d63abc1-54c4-447f-8687-683eeec387a5 dc6ecc722b0d1958c152c1f670e12a3e { 'aliquot_tag': 'DUP_ffe08254', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01861.DUP_ffe08254.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 299c288d-4f31-43f3-8720-a8b5848e8fc0.rna_seq.genomic.gdc_realn.bam 7872779832 BAM genomic harmonized CPTAC3 40884817-f053-4fc4-9811-69cbc3e4e3e8 b9522af5982f6f24d458041c8f2c2e0d { 'aliquot_tag': 'DUP_ffe08254', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3L-01861.DUP_ffe08254.RNA-Seq.R1_L008.T C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTCACCAA-CTAGGCAA_S30_L008_R1_001.fastq.gz 3568920690 FASTQ R1_L008 unaligned CPTAC3 1ad2341c-5b62-4ec7-b0da-7b417d931840 61fcdc951d6b7dbff76b9e69546b149b { 'aliquot_tag': 'DUP_ffe08254', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3L-01861.DUP_ffe08254.RNA-Seq.R2_L008.T C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTCACCAA-CTAGGCAA_S30_L008_R2_001.fastq.gz 4321608798 FASTQ R2_L008 unaligned CPTAC3 0d63abc1-54c4-447f-8687-683eeec387a5 dc6ecc722b0d1958c152c1f670e12a3e { 'aliquot_tag': 'DUP_ffe08254', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3L-01861.DUP_ffe08254.RNA-Seq.transcriptome.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092300006 299c288d-4f31-43f3-8720-a8b5848e8fc0.rna_seq.transcriptome.gdc_realn.bam 9172557324 BAM transcriptome harmonized CPTAC3 25aad822-7ac0-4d62-9fd1-794852401f15 e7b159c232d657a11ddc08edd653fad8 { 'aliquot_tag': 'DUP_ffe08254', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3L-01861.MethArray.Green.A C3L-01861 CCRCC Methylation Array tissue_normal CPT0092310009 204930630107_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9fdb30f0-efe8-4aa7-803a-0b52259b3077 d803622eea9ab01be29030547ff0e6ba { 'aliquot_tag': 'ALQ_523fb675', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01861.MethArray.Green.T C3L-01861 CCRCC Methylation Array tumor CPT0092290008 202234370091_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 e29fb20a-4aa3-4941-a00f-bff79be1f5af 742add2ac72655365caba9dea3f88533 { 'aliquot_tag': 'ALQ_de141e87', 'gdc_sample_type': 'Primary Tumor' } @@ -8362,12 +9051,12 @@ C3L-01861.miRNA-Seq.T C3L-01861 CCRCC miRNA-Seq tumor CPT0092290005 181119_UNC31 C3L-01861.miRNA-Seq.T.hg38 C3L-01861 CCRCC miRNA-Seq tumor CPT0092290005 38be969b-47f9-4081-b857-ddcb771518ff_mirnaseq_gdc_realn.bam 300992995 BAM harmonized CPTAC3 d81c620c-2331-456d-bb55-c816b9d72785 8a3f3ca7c80554380aeb3cbaa6b72635 { 'aliquot_tag': 'ALQ_a0a5623a', 'gdc_sample_type': 'Primary Tumor' } C3L-01861.RNA-Seq.chimeric.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 ab2ffed0-a613-4bc6-b17b-12cad8b71477.rna_seq.chimeric.gdc_realn.bam 93740365 BAM chimeric harmonized CPTAC3 3e81d439-6672-4a2c-8b7e-4c32421257e3 49e976c037d9bc63eb404e4cd32051f9 { 'aliquot_tag': 'ALQ_c280abe4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01861.RNA-Seq.chimeric.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 4eb1cfb2-4ca0-42ee-87c1-c978517fa3d5.rna_seq.chimeric.gdc_realn.bam 39528028 BAM chimeric harmonized CPTAC3 662ad4f1-9e68-4347-b9f2-4aef9a45ce9c 26869220a1d4662dc4c70a7d57fe2bfa { 'aliquot_tag': 'ALQ_a0a5623a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01861.RNA-Seq.genomic.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 ab2ffed0-a613-4bc6-b17b-12cad8b71477.rna_seq.genomic.gdc_realn.bam 8157494376 BAM genomic harmonized CPTAC3 3c703143-8b8d-4fc9-880a-534f83d6f579 5f9da83d37a9d52dc447d416d9d0d545 { 'aliquot_tag': 'ALQ_c280abe4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01861.RNA-Seq.genomic.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 ab2ffed0-a613-4bc6-b17b-12cad8b71477.rna_seq.genomic.gdc_realn.bam 8157494376 BAM genomic harmonized CPTAC3 bb2907c6-d8e6-4caa-9ef2-863a585c902b 5f9da83d37a9d52dc447d416d9d0d545 { 'aliquot_tag': 'ALQ_c280abe4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01861.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 4eb1cfb2-4ca0-42ee-87c1-c978517fa3d5.rna_seq.genomic.gdc_realn.bam 9538428600 BAM genomic harmonized CPTAC3 cdd14852-a7be-4c3f-a0e7-0f65b34e01e5 1e133bb29c4c9d532f4c894c99ebe6f7 { 'aliquot_tag': 'ALQ_a0a5623a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01861.RNA-Seq.R1_L001.A C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L001_R1_001.fastq.gz 4271755155 FASTQ R1_L001 unaligned CPTAC3 2ecc3a28-7e0e-4680-9f69-77060ad2835f 0de5c2276244549a54adf7ac155dd629 { 'aliquot_tag': 'ALQ_c280abe4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01861.RNA-Seq.R1_L004.T C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGGCC_S49_L004_R1_001.fastq.gz 4425587923 FASTQ R1_L004 unaligned CPTAC3 dad117ab-2b82-4007-8738-65dd691734bc 5191b5d2dcb74677829ba66f04c61265 { 'aliquot_tag': 'ALQ_a0a5623a', 'gdc_sample_type': 'Primary Tumor' } -C3L-01861.RNA-Seq.R2_L001.A C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L001_R2_001.fastq.gz 4468740133 FASTQ R2_L001 unaligned CPTAC3 7ea16c75-8f3d-40ac-83cb-eb1b8103e5ba 4255d648ff6836ed5ea677abcaa57074 { 'aliquot_tag': 'ALQ_c280abe4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01861.RNA-Seq.R2_L004.T C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGGCC_S49_L004_R2_001.fastq.gz 4907942717 FASTQ R2_L004 unaligned CPTAC3 f0a3c65b-b19d-4dd2-b374-45f0bc1056dd def617a813991ec92a4fe62a3da74d31 { 'aliquot_tag': 'ALQ_a0a5623a', 'gdc_sample_type': 'Primary Tumor' } +C3L-01861.RNA-Seq.R1_L001.A C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L001_R1_001.fastq.gz 4271755155 FASTQ R1_L001 unaligned CPTAC3 2ecc3a28-7e0e-4680-9f69-77060ad2835f 0de5c2276244549a54adf7ac155dd629 { 'aliquot_tag': 'ALQ_c280abe4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-01861.RNA-Seq.R1_L004.T C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGGCC_S49_L004_R1_001.fastq.gz 4425587923 FASTQ R1_L004 unaligned CPTAC3 dad117ab-2b82-4007-8738-65dd691734bc 5191b5d2dcb74677829ba66f04c61265 { 'aliquot_tag': 'ALQ_a0a5623a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01861.RNA-Seq.R2_L001.A C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L001_R2_001.fastq.gz 4468740133 FASTQ R2_L001 unaligned CPTAC3 7ea16c75-8f3d-40ac-83cb-eb1b8103e5ba 4255d648ff6836ed5ea677abcaa57074 { 'aliquot_tag': 'ALQ_c280abe4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-01861.RNA-Seq.R2_L004.T C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGGCC_S49_L004_R2_001.fastq.gz 4907942717 FASTQ R2_L004 unaligned CPTAC3 f0a3c65b-b19d-4dd2-b374-45f0bc1056dd def617a813991ec92a4fe62a3da74d31 { 'aliquot_tag': 'ALQ_a0a5623a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01861.RNA-Seq.transcriptome.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal CPT0092310006 ab2ffed0-a613-4bc6-b17b-12cad8b71477.rna_seq.transcriptome.gdc_realn.bam 10321800248 BAM transcriptome harmonized CPTAC3 ac7769d6-7148-4c7a-9f31-0e4bfcf7d843 eee8aa13fb9f396ef8a9180f43dd47c3 { 'aliquot_tag': 'ALQ_c280abe4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01861.RNA-Seq.transcriptome.T.hg38 C3L-01861 CCRCC RNA-Seq tumor CPT0092290005 4eb1cfb2-4ca0-42ee-87c1-c978517fa3d5.rna_seq.transcriptome.gdc_realn.bam 10900309173 BAM transcriptome harmonized CPTAC3 722b81c2-4f10-4f15-8789-20cb3e4cb239 b64f0ddcfa4ac3275108261da84337d6 { 'aliquot_tag': 'ALQ_a0a5623a', 'gdc_sample_type': 'Primary Tumor' } C3L-01861.WGS.A C3L-01861 CCRCC WGS tissue_normal CPT0092310009 CPT0092310009.WholeGenome.RP-1303.bam 63933194648 BAM aligned CPTAC3 bd6271df-8a20-4b2e-811d-47bbecfd7693 ca6e520e348905ff61f085e8a7ad007c { 'aliquot_tag': 'ALQ_523fb675', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -8387,9 +9076,9 @@ C3L-01862.MethArray.Red.T C3L-01862 LUAD Methylation Array tumor CPT0092530009 2 C3L-01862.miRNA-Seq.T C3L-01862 LUAD miRNA-Seq tumor CPT0092530006 180724_UNC32-K00270_0106_BHWK3MBBXX_CCAACA_S12_L007_R1_001.unaln.bam 235287641 BAM unaligned CPTAC3 2ffff661-1587-474c-a731-2b9cf09022f4 1f51102365f8c7893268f63d1ff51c72 { 'aliquot_tag': 'ALQ_6e191b99', 'gdc_sample_type': 'Primary Tumor' } C3L-01862.miRNA-Seq.T.hg38 C3L-01862 LUAD miRNA-Seq tumor CPT0092530006 ececbc0c-233e-484d-ae47-d4470a3c1ca9_mirnaseq_gdc_realn.bam 255210704 BAM harmonized CPTAC3 2329767b-6ef7-472d-bbfc-6dc9e88ffbb7 4b2e392752a71270b9f43b7a10caca28 { 'aliquot_tag': 'ALQ_6e191b99', 'gdc_sample_type': 'Primary Tumor' } C3L-01862.RNA-Seq.chimeric.T.hg38 C3L-01862 LUAD RNA-Seq tumor CPT0092530006 57e7dd12-c7c0-4c2c-b6ad-d987557f5ba3.rna_seq.chimeric.gdc_realn.bam 36820813 BAM chimeric harmonized CPTAC3 d9addc7d-ae44-4f76-af16-e46988b7af99 51b92a40cec2ea9689084bc805c76b3e { 'aliquot_tag': 'ALQ_6e191b99', 'gdc_sample_type': 'Primary Tumor' } -C3L-01862.RNA-Seq.genomic.T.hg38 C3L-01862 LUAD RNA-Seq tumor CPT0092530006 57e7dd12-c7c0-4c2c-b6ad-d987557f5ba3.rna_seq.genomic.gdc_realn.bam 8965761700 BAM genomic harmonized CPTAC3 5a896cd4-7357-475d-bf29-37246c46e251 7a9c73e663fd926e81be2ab36da69669 { 'aliquot_tag': 'ALQ_6e191b99', 'gdc_sample_type': 'Primary Tumor' } -C3L-01862.RNA-Seq.R1_L005.T C3L-01862 LUAD RNA-Seq tumor CPT0092530006 171129_UNC32-K00270_0066_AHM25VBBXX_CTTGTA_S19_L005_R1_001.fastq.gz 4120978178 FASTQ R1_L005 unaligned CPTAC3 4219c6a3-ebfd-44b3-9d38-201568490256 dad67421df5aa53e348b262a9e5b23a7 { 'aliquot_tag': 'ALQ_6e191b99', 'gdc_sample_type': 'Primary Tumor' } -C3L-01862.RNA-Seq.R2_L005.T C3L-01862 LUAD RNA-Seq tumor CPT0092530006 171129_UNC32-K00270_0066_AHM25VBBXX_CTTGTA_S19_L005_R2_001.fastq.gz 4548879892 FASTQ R2_L005 unaligned CPTAC3 465e52f3-5a50-4f1e-808a-6778c1c318d5 aa50cc07d36a5f0c62e78c0cea5a6eef { 'aliquot_tag': 'ALQ_6e191b99', 'gdc_sample_type': 'Primary Tumor' } +C3L-01862.RNA-Seq.genomic.T.hg38 C3L-01862 LUAD RNA-Seq tumor CPT0092530006 57e7dd12-c7c0-4c2c-b6ad-d987557f5ba3.rna_seq.genomic.gdc_realn.bam 8965761700 BAM genomic harmonized CPTAC3 ed0e9d1c-9308-46d1-b61d-85674973c0c0 7a9c73e663fd926e81be2ab36da69669 { 'aliquot_tag': 'ALQ_6e191b99', 'gdc_sample_type': 'Primary Tumor' } +C3L-01862.RNA-Seq.R1_L005.T C3L-01862 LUAD RNA-Seq tumor CPT0092530006 171129_UNC32-K00270_0066_AHM25VBBXX_CTTGTA_S19_L005_R1_001.fastq.gz 4120978178 FASTQ R1_L005 unaligned CPTAC3 4219c6a3-ebfd-44b3-9d38-201568490256 dad67421df5aa53e348b262a9e5b23a7 { 'aliquot_tag': 'ALQ_6e191b99', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01862.RNA-Seq.R2_L005.T C3L-01862 LUAD RNA-Seq tumor CPT0092530006 171129_UNC32-K00270_0066_AHM25VBBXX_CTTGTA_S19_L005_R2_001.fastq.gz 4548879892 FASTQ R2_L005 unaligned CPTAC3 465e52f3-5a50-4f1e-808a-6778c1c318d5 aa50cc07d36a5f0c62e78c0cea5a6eef { 'aliquot_tag': 'ALQ_6e191b99', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-01862.RNA-Seq.transcriptome.T.hg38 C3L-01862 LUAD RNA-Seq tumor CPT0092530006 57e7dd12-c7c0-4c2c-b6ad-d987557f5ba3.rna_seq.transcriptome.gdc_realn.bam 11340324515 BAM transcriptome harmonized CPTAC3 bb608a20-80f0-4e79-9424-21013332753c b60bf4c2ce7f9ae7911b9c227d290750 { 'aliquot_tag': 'ALQ_6e191b99', 'gdc_sample_type': 'Primary Tumor' } C3L-01862.WGS.N C3L-01862 LUAD WGS blood_normal CPT0093710002 CPT0093710002.WholeGenome.RP-1303.bam 58849921309 BAM aligned CPTAC3 b17ae2c3-1c0f-408a-97b5-912d614bf173 b2ed7f7b2f9ade022a26eaafbfa0a00f { 'aliquot_tag': 'ALQ_f80b265f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01862.WGS.N.hg38 C3L-01862 LUAD WGS blood_normal CPT0093710002 57736f53-612c-4e10-a5f2-2bb931276189_wgs_gdc_realn.bam 86753067559 BAM harmonized CPTAC3 a4c24fbd-b085-4bbd-b8d1-068c9eb717aa 9dfe75789bd28fcba3eca63737bb67c5 { 'aliquot_tag': 'ALQ_f80b265f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -8407,13 +9096,16 @@ C3L-01864.ADD_8ad89aa6.WXS.T C3L-01864 UCEC WXS tumor CPT0092860009 CPT009286000 C3L-01864.ADD_8ad89aa6.WXS.T.hg38 C3L-01864 UCEC WXS tumor CPT0092860009 31aa7828-c230-4711-a349-8bf53fd585a3_wxs_gdc_realn.bam 67184302768 BAM harmonized CPTAC3 f931272e-d6b4-4528-9ae0-d0c0b4bf2607 188a5270182a447b69c9b2c7095b843d { 'aliquot_tag': 'ADD_8ad89aa6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional DNA requested ' } C3L-01864.miRNA-Seq.T C3L-01864 UCEC miRNA-Seq tumor CPT0092860006 180724_UNC32-K00270_0106_BHWK3MBBXX_GACGAC_S17_L007_R1_001.unaln.bam 250664341 BAM unaligned CPTAC3 f971a0b1-88cb-41b0-a113-7bac19d2b90e d2660864ede4f24aeddbe03b1d96b2b1 { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor' } C3L-01864.miRNA-Seq.T.hg38 C3L-01864 UCEC miRNA-Seq tumor CPT0092860006 da25a4de-2fe7-4937-9172-37a99df7da2f_mirnaseq_gdc_realn.bam 266255007 BAM harmonized CPTAC3 d8ed9995-3186-482b-85c4-3ae4b3f56cf1 2e9dfeaddd49491fb3eb562b67a275de { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor' } -C3L-01864.RNA-Seq.chimeric.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 47085edc-7a09-48d5-991f-ea2b711120f9.rna_seq.chimeric.gdc_realn.bam 50349603 BAM chimeric harmonized CPTAC3 a6a00a35-75e3-477a-8175-aa314ac1d941 1d7f1dbd0ffe22f87f2dbcb4e72de12b { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor' } -C3L-01864.RNA-Seq.genomic.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 47085edc-7a09-48d5-991f-ea2b711120f9.rna_seq.genomic.gdc_realn.bam 9783069942 BAM genomic harmonized CPTAC3 6f61c1b9-345a-4666-8a1e-003049d47133 2a7a6c916839a6cddde169a9ff659f8f { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor' } -C3L-01864.RNA-Seq.R1_L003.T C3L-01864 UCEC RNA-Seq tumor CPT0092860006 171129_UNC32-K00270_0066_AHM25VBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4601825908 FASTQ R1_L003 unaligned CPTAC3 1e51c9a1-a6ee-41d5-b3bc-9b61f6615133 101c490bc789383adf71b8a5ed5b52cf { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor' } -C3L-01864.RNA-Seq.R1_.T C3L-01864 UCEC RNA-Seq tumor CPT0350070001 20210729_P3_A7_WB7988-Plate3_S7_R1_001.fastq.gz 5945382344 FASTQ R1_ unaligned CPTAC3 747b9cc5-9795-488c-b15b-68c836c9c7a1 cf69aee1759d7053bb031a6ed55f1cb9 { 'aliquot_tag': 'ALQ_ac8d81ea', 'gdc_sample_type': 'Primary Tumor' } -C3L-01864.RNA-Seq.R2_L003.T C3L-01864 UCEC RNA-Seq tumor CPT0092860006 171129_UNC32-K00270_0066_AHM25VBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 5164853456 FASTQ R2_L003 unaligned CPTAC3 4d4b982f-8785-4328-a444-2bd0a18f44bc d4d95800eeb9b06f7cff199b8a964a1f { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor' } -C3L-01864.RNA-Seq.R2_.T C3L-01864 UCEC RNA-Seq tumor CPT0350070001 20210729_P3_A7_WB7988-Plate3_S7_R2_001.fastq.gz 6194710624 FASTQ R2_ unaligned CPTAC3 06e4023e-2f67-47f8-bfc1-c3c4048e9439 e37adee3309539f70472cc4382350f6c { 'aliquot_tag': 'ALQ_ac8d81ea', 'gdc_sample_type': 'Primary Tumor' } -C3L-01864.RNA-Seq.transcriptome.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 47085edc-7a09-48d5-991f-ea2b711120f9.rna_seq.transcriptome.gdc_realn.bam 11520689207 BAM transcriptome harmonized CPTAC3 61c10e51-7be6-49ce-b16b-f81622585b0d a8a66ffcf404e8a34daf9b161cf2f748 { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor' } +C3L-01864.RNA-Seq.chimeric.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 026eb499-7289-4772-becf-0adcc74cee52.rna_seq.chimeric.gdc_realn.bam 50344139 BAM chimeric harmonized CPTAC3 b28deb90-4d19-48ee-b78a-1b93b489e44d 884e9dd43e00291dd1d4256264190cfc { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor' } +C3L-01864.RNA-Seq.chimeric.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0350070001 c5c13e31-cf40-414a-a6a4-534f661a6459.rna_seq.chimeric.gdc_realn.bam 198100560 BAM chimeric harmonized CPTAC3 919cc0e6-205c-4f6a-bc5e-9598c91c4bb5 71766bd14491886ad501cb7b6e644d29 { 'aliquot_tag': 'ALQ_ac8d81ea', 'gdc_sample_type': 'Primary Tumor' } +C3L-01864.RNA-Seq.genomic.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 026eb499-7289-4772-becf-0adcc74cee52.rna_seq.genomic.gdc_realn.bam 9784918294 BAM genomic harmonized CPTAC3 357c63dd-ecd1-49f6-8cfd-c5c9b6d877c5 1d033b6854eb9e1e9b1de35126b4c634 { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor' } +C3L-01864.RNA-Seq.genomic.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0350070001 c5c13e31-cf40-414a-a6a4-534f661a6459.rna_seq.genomic.gdc_realn.bam 10087932541 BAM genomic harmonized CPTAC3 16410db8-c28a-4a16-896e-ce6e490d5a97 e3a31dea13fa2f4850ea0e91b091bd5b { 'aliquot_tag': 'ALQ_ac8d81ea', 'gdc_sample_type': 'Primary Tumor' } +C3L-01864.RNA-Seq.R1_L003.T C3L-01864 UCEC RNA-Seq tumor CPT0092860006 171129_UNC32-K00270_0066_AHM25VBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4601825908 FASTQ R1_L003 unaligned CPTAC3 1e51c9a1-a6ee-41d5-b3bc-9b61f6615133 101c490bc789383adf71b8a5ed5b52cf { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01864.RNA-Seq.R2_L003.T C3L-01864 UCEC RNA-Seq tumor CPT0092860006 171129_UNC32-K00270_0066_AHM25VBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 5164853456 FASTQ R2_L003 unaligned CPTAC3 4d4b982f-8785-4328-a444-2bd0a18f44bc d4d95800eeb9b06f7cff199b8a964a1f { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01864.RNA-Seq.T C3L-01864 UCEC RNA-Seq tumor CPT0350070001 20210729_P3_A7_WB7988-Plate3_S7_R1_001.fastq.gz 5945382344 FASTQ unaligned CPTAC3 747b9cc5-9795-488c-b15b-68c836c9c7a1 cf69aee1759d7053bb031a6ed55f1cb9 +C3L-01864.RNA-Seq.T C3L-01864 UCEC RNA-Seq tumor CPT0350070001 20210729_P3_A7_WB7988-Plate3_S7_R2_001.fastq.gz 6194710624 FASTQ unaligned CPTAC3 06e4023e-2f67-47f8-bfc1-c3c4048e9439 e37adee3309539f70472cc4382350f6c +C3L-01864.RNA-Seq.transcriptome.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0092860006 026eb499-7289-4772-becf-0adcc74cee52.rna_seq.transcriptome.gdc_realn.bam 13215413605 BAM transcriptome harmonized CPTAC3 c3f2efb3-b3e1-4413-b442-b8e18a64a105 1065bc3860760da80667e78e068e267d { 'aliquot_tag': 'ALQ_1a678737', 'gdc_sample_type': 'Primary Tumor' } +C3L-01864.RNA-Seq.transcriptome.T.hg38 C3L-01864 UCEC RNA-Seq tumor CPT0350070001 c5c13e31-cf40-414a-a6a4-534f661a6459.rna_seq.transcriptome.gdc_realn.bam 5923225814 BAM transcriptome harmonized CPTAC3 4ab216eb-2070-460b-85d6-a8aae458bac2 58e7e89ea543b7368a90831a187afdca { 'aliquot_tag': 'ALQ_ac8d81ea', 'gdc_sample_type': 'Primary Tumor' } C3L-01864.WGS.N C3L-01864 UCEC WGS blood_normal CPT0093840002 CPT0093840002.WholeGenome.RP-1303.bam 61379417141 BAM aligned CPTAC3 88ed8c9f-aea6-479b-a9ba-f8904ec7c833 46e843566813fbff4d46d0e0a4a68984 { 'aliquot_tag': 'ALQ_c1bd1bfa', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01864.WGS.N.hg38 C3L-01864 UCEC WGS blood_normal CPT0093840002 ebcd3c59-6e3a-4913-8bc4-50fe264a0f67_wgs_gdc_realn.bam 89371314010 BAM harmonized CPTAC3 bcbc24e7-469a-41ab-8589-f6481dcd15f6 9c649ac132e23f543b351da4a76c88e2 { 'aliquot_tag': 'ALQ_c1bd1bfa', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01864.WXS.N C3L-01864 UCEC WXS blood_normal CPT0093840002 CPT0093840002.WholeExome.RP-1303.bam 32526733430 BAM aligned CPTAC3 d93ada75-e013-4c14-9945-0a8dde071738 09a5b854eeb821aa15211636d5021587 { 'aliquot_tag': 'ALQ_c1bd1bfa', 'gdc_sample_type': 'Blood Derived Normal' } @@ -8426,16 +9118,16 @@ C3L-01865.miRNA-Seq.A C3L-01865 CCRCC miRNA-Seq tissue_normal CPT0392290009 2101 C3L-01865.miRNA-Seq.A.hg38 C3L-01865 CCRCC miRNA-Seq tissue_normal CPT0392290009 83131548-9c7d-4f78-a54c-66276dae8545_mirnaseq_gdc_realn.bam 367302843 BAM harmonized CPTAC3 7048228b-e5a6-4780-a997-81a65b244571 662c14b8a0320a6f4a83248b5cafee8a { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01865.miRNA-Seq.T C3L-01865 CCRCC miRNA-Seq tumor CPT0392260009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCCCGA_S36_L002_R1_001.unaln.bam 231692977 BAM unaligned CPTAC3 8780f5ff-7010-45e0-ad0e-d4e47cef0421 9f81e6bd88d49bd683db76c67e5a7614 { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor' } C3L-01865.miRNA-Seq.T.hg38 C3L-01865 CCRCC miRNA-Seq tumor CPT0392260009 cd5754c0-0bd2-4470-aa09-f411a7d1d1b1_mirnaseq_gdc_realn.bam 250578124 BAM harmonized CPTAC3 120b5166-f72b-4032-8943-2f6af8e8803a 6f4bfff14f936acee945daf24cf71172 { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor' } -C3L-01865.RNA-Seq.chimeric.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 634baed8-605a-4181-ba68-0d0a09219246.rna_seq.chimeric.gdc_realn.bam 437164835 BAM chimeric harmonized CPTAC3 0ab0b5fb-e269-409f-a627-802597cf5ea9 09e8b9251e3987117f5788a1553006c2 { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01865.RNA-Seq.chimeric.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 2599b2f3-3507-4c79-b63a-4a4143489542.rna_seq.chimeric.gdc_realn.bam 288007172 BAM chimeric harmonized CPTAC3 5a8b784b-7959-47f0-9205-334946436e96 361011b126c654b675efe1194b749102 { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor' } -C3L-01865.RNA-Seq.genomic.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 634baed8-605a-4181-ba68-0d0a09219246.rna_seq.genomic.gdc_realn.bam 9324752759 BAM genomic harmonized CPTAC3 4f97a8d7-4605-41f7-9448-ca232e44bc3d 714e84a696bae61d34923a1dcc69eda3 { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01865.RNA-Seq.genomic.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 2599b2f3-3507-4c79-b63a-4a4143489542.rna_seq.genomic.gdc_realn.bam 7218725976 BAM genomic harmonized CPTAC3 b0b87454-e5c3-4aa7-92a7-94a38d0aa1c3 8dc7da7881e8dd2a15d1218b0bed6d95 { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor' } -C3L-01865.RNA-Seq.R1_L006.A C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 210105_UNC32-K00270_0268_AHK7HMBBXY_GTTCCAAT-AATTCTGC_S21_L006_R1_001.fastq.gz 4476794263 FASTQ R1_L006 unaligned CPTAC3 f5b3d245-d6ed-44e1-a413-2530f7807c26 19fa092c74a002c1cdf0384195024f57 { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01865.RNA-Seq.R1_L006.T C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCAATGCA-GGAACGTT_S20_L006_R1_001.fastq.gz 3456379596 FASTQ R1_L006 unaligned CPTAC3 5e02e48c-21d8-458d-88cf-c84adca0d5de e6cda8722316fe5a6cea838f4860a35f { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor' } -C3L-01865.RNA-Seq.R2_L006.A C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 210105_UNC32-K00270_0268_AHK7HMBBXY_GTTCCAAT-AATTCTGC_S21_L006_R2_001.fastq.gz 4988372571 FASTQ R2_L006 unaligned CPTAC3 bf810b10-9635-4312-b143-3183e225d9d3 f878af3417517c09ba5abd6510cc9f48 { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01865.RNA-Seq.R2_L006.T C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCAATGCA-GGAACGTT_S20_L006_R2_001.fastq.gz 3829029386 FASTQ R2_L006 unaligned CPTAC3 dc84f53c-25fd-489e-b417-f5645d72840c 767a53e4e1e2f7bbf32af458db2e9836 { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor' } -C3L-01865.RNA-Seq.transcriptome.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 634baed8-605a-4181-ba68-0d0a09219246.rna_seq.transcriptome.gdc_realn.bam 10452908593 BAM transcriptome harmonized CPTAC3 37bb93a0-354d-4aa2-9c58-1cefbc17b9b2 301ecb236cb8347a1697c0ceb3ef784e { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01865.RNA-Seq.transcriptome.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 2599b2f3-3507-4c79-b63a-4a4143489542.rna_seq.transcriptome.gdc_realn.bam 8902497424 BAM transcriptome harmonized CPTAC3 8ed20df6-d9a6-4f0e-b10a-350535057ca5 c9e310d224aaadf8fcd4c444041d6cb1 { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor' } +C3L-01865.RNA-Seq.chimeric.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 7bec097d-e7e8-4119-b237-4b9a7a590e5f.rna_seq.chimeric.gdc_realn.bam 437214999 BAM chimeric harmonized CPTAC3 17be6839-c07c-4314-a659-6937ed574411 152e606ab1db5a7d111a6822a4be05c7 { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01865.RNA-Seq.chimeric.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 bda39650-6af8-4ea1-9513-ef3d6ce05123.rna_seq.chimeric.gdc_realn.bam 288024570 BAM chimeric harmonized CPTAC3 71840ad2-fa35-4166-9ce3-4c502e82200c 5e03d7d78026fff79c4c22d64c2a46a9 { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor' } +C3L-01865.RNA-Seq.genomic.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 7bec097d-e7e8-4119-b237-4b9a7a590e5f.rna_seq.genomic.gdc_realn.bam 9332146569 BAM genomic harmonized CPTAC3 c578bda2-2c37-4111-9612-69b9c1f579ef 223eca59b884f6a90d03394e92fcc6cf { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01865.RNA-Seq.genomic.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 bda39650-6af8-4ea1-9513-ef3d6ce05123.rna_seq.genomic.gdc_realn.bam 7224821838 BAM genomic harmonized CPTAC3 3c6ee22c-38d9-4af8-9976-f4b576ade5a8 b3fa7ae4ce1902fd468b8e07d0250ab3 { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor' } +C3L-01865.RNA-Seq.R1_L006.A C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 210105_UNC32-K00270_0268_AHK7HMBBXY_GTTCCAAT-AATTCTGC_S21_L006_R1_001.fastq.gz 4476794263 FASTQ R1_L006 unaligned CPTAC3 f5b3d245-d6ed-44e1-a413-2530f7807c26 19fa092c74a002c1cdf0384195024f57 { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-01865.RNA-Seq.R1_L006.T C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCAATGCA-GGAACGTT_S20_L006_R1_001.fastq.gz 3456379596 FASTQ R1_L006 unaligned CPTAC3 5e02e48c-21d8-458d-88cf-c84adca0d5de e6cda8722316fe5a6cea838f4860a35f { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01865.RNA-Seq.R2_L006.A C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 210105_UNC32-K00270_0268_AHK7HMBBXY_GTTCCAAT-AATTCTGC_S21_L006_R2_001.fastq.gz 4988372571 FASTQ R2_L006 unaligned CPTAC3 bf810b10-9635-4312-b143-3183e225d9d3 f878af3417517c09ba5abd6510cc9f48 { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-01865.RNA-Seq.R2_L006.T C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 210105_UNC32-K00270_0268_AHK7HMBBXY_GCAATGCA-GGAACGTT_S20_L006_R2_001.fastq.gz 3829029386 FASTQ R2_L006 unaligned CPTAC3 dc84f53c-25fd-489e-b417-f5645d72840c 767a53e4e1e2f7bbf32af458db2e9836 { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01865.RNA-Seq.transcriptome.A.hg38 C3L-01865 CCRCC RNA-Seq tissue_normal CPT0392290009 7bec097d-e7e8-4119-b237-4b9a7a590e5f.rna_seq.transcriptome.gdc_realn.bam 12031452817 BAM transcriptome harmonized CPTAC3 157271a4-31a5-406e-8d81-aea218b00b61 f1d72ef7d924bd6e962f6a82eb93ad57 { 'aliquot_tag': 'ALQ_909e12d4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01865.RNA-Seq.transcriptome.T.hg38 C3L-01865 CCRCC RNA-Seq tumor CPT0392260009 bda39650-6af8-4ea1-9513-ef3d6ce05123.rna_seq.transcriptome.gdc_realn.bam 10305449476 BAM transcriptome harmonized CPTAC3 efbed705-7bdf-493d-a9e1-66ddf1e0b77d 64fff06b82cb42704d1b5f8f3fce06f4 { 'aliquot_tag': 'ALQ_12ce8505', 'gdc_sample_type': 'Primary Tumor' } C3L-01865.WGS.N C3L-01865 CCRCC WGS blood_normal CPT0392340002 CPT0392340002.WholeGenome.RP-2158.bam 25740747985 BAM aligned CPTAC3 a7a9ffb6-c195-4abe-b96e-c4286ab30f4f 6e184f9edd13fae7b9c43b6f53e1bfd3 { 'aliquot_tag': 'ALQ_3480dc48', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01865.WGS.N.hg38 C3L-01865 CCRCC WGS blood_normal CPT0392340002 c8f6b46e-e17d-46dc-9b9e-cc78f9700bec_wgs_gdc_realn.bam 77793818370 BAM harmonized CPTAC3 58cd4cf6-7437-4a6f-9691-2d3f0f263ecc 3a4e1fe4f00627a364751487a3aacdce { 'aliquot_tag': 'ALQ_3480dc48', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01865.WGS.T C3L-01865 CCRCC WGS tumor CPT0392260006 CPT0392260006.WholeGenome.RP-2158.bam 41294115179 BAM aligned CPTAC3 d245af47-abec-4707-af46-1e92b6f8d339 3948f0a2b3bd04aa7abab4871bb06335 { 'aliquot_tag': 'ALQ_82719894', 'gdc_sample_type': 'Primary Tumor' } @@ -8454,16 +9146,16 @@ C3L-01869.miRNA-Seq.A C3L-01869 CCRCC miRNA-Seq tissue_normal CPT0104270009 1811 C3L-01869.miRNA-Seq.A.hg38 C3L-01869 CCRCC miRNA-Seq tissue_normal CPT0104270009 a0d3acf0-e9f4-4dc6-8c9d-085616be5bc6_mirnaseq_gdc_realn.bam 249660018 BAM harmonized CPTAC3 e3cda1fb-936b-4f0e-8027-603b4d3613c5 3d6e8330afe757348f4ef6c2466eee05 { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01869.miRNA-Seq.T C3L-01869 CCRCC miRNA-Seq tumor CPT0104250006 181108_UNC31-K00269_0163_BH23TVBBXY_CATTTT_S35_L007_R1_001.unaln.bam 242625895 BAM unaligned CPTAC3 5bcc7f57-ca20-4d18-9b00-85a2260ee225 4142dee5106f6090f182df0544a3fc18 { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor' } C3L-01869.miRNA-Seq.T.hg38 C3L-01869 CCRCC miRNA-Seq tumor CPT0104250006 73fbeec4-2d33-4c70-8077-81ce50676dcd_mirnaseq_gdc_realn.bam 267057928 BAM harmonized CPTAC3 45acf4bf-8ec8-4180-a5bb-1ea86fd4a3b7 20a8856e1bb0a8c73ac348fded92333b { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01869.RNA-Seq.chimeric.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 4928625e-2592-4edc-b280-a5310b54ca2c.rna_seq.chimeric.gdc_realn.bam 32830852 BAM chimeric harmonized CPTAC3 1c1df797-7abe-48ff-9461-f82302661cc1 41f333b04dd940aa87e2fb093bad209c { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01869.RNA-Seq.chimeric.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 18a8db6e-49cc-4b82-b55c-7560e7b403ae.rna_seq.chimeric.gdc_realn.bam 33376700 BAM chimeric harmonized CPTAC3 37b60f03-95e4-46dc-a658-be9805eb9dcf 3b9c471e19d27e993f37fca6c7a25c7e { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01869.RNA-Seq.genomic.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 4928625e-2592-4edc-b280-a5310b54ca2c.rna_seq.genomic.gdc_realn.bam 10168497891 BAM genomic harmonized CPTAC3 3cea1778-7bda-48c0-84ea-05ade66e1891 e365a4fa97d7592a6dc0b73723e683c3 { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01869.RNA-Seq.genomic.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 18a8db6e-49cc-4b82-b55c-7560e7b403ae.rna_seq.genomic.gdc_realn.bam 8187222735 BAM genomic harmonized CPTAC3 63706de1-fbd8-47cc-82c6-2012b0b24bc8 d3427d35034868dc8c6c9c182fd06294 { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01869.RNA-Seq.R1_L008.A C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L008_R1_001.fastq.gz 4407540594 FASTQ R1_L008 unaligned CPTAC3 ed8efa89-263f-41cf-ae47-b38d9488d76d 9894820cce6ec97bcc496a4338572e6a { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01869.RNA-Seq.R1_L008.T C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3720636191 FASTQ R1_L008 unaligned CPTAC3 d36d5d2c-b956-4ffa-b021-18fc146e7a86 9c16c05ae9c3faa4770997dcad085112 { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01869.RNA-Seq.R2_L008.A C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L008_R2_001.fastq.gz 4732447620 FASTQ R2_L008 unaligned CPTAC3 5341987b-d880-4778-8c4a-6c74cb1dfaf8 00303a2a5e8395d6ab3991973808744c { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01869.RNA-Seq.R2_L008.T C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4160535503 FASTQ R2_L008 unaligned CPTAC3 88b9a1b5-a8ef-4650-9369-cb6e7a1e32cc d9d0236c47489c172b7143a5535868b1 { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01869.RNA-Seq.transcriptome.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 4928625e-2592-4edc-b280-a5310b54ca2c.rna_seq.transcriptome.gdc_realn.bam 9942392124 BAM transcriptome harmonized CPTAC3 a6a92278-12ea-41cd-afd6-018818cb0871 7407c912e17dc572231002c1c9c20164 { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01869.RNA-Seq.transcriptome.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 18a8db6e-49cc-4b82-b55c-7560e7b403ae.rna_seq.transcriptome.gdc_realn.bam 9249512219 BAM transcriptome harmonized CPTAC3 41377249-1663-433f-a2c1-33db6da862d6 01d87567c2fc44d03d72b2df776df21b { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor' } +C3L-01869.RNA-Seq.chimeric.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 e21da563-d430-460a-a655-d92e04323d4a.rna_seq.chimeric.gdc_realn.bam 32824012 BAM chimeric harmonized CPTAC3 0f3255c4-eadc-4a8a-ada9-a61bbcd50a5a bf4ba1d01f5dcfa9f0b41dd38c53b793 { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01869.RNA-Seq.chimeric.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 577fd46f-8f6d-4717-bace-f14f7bebb807.rna_seq.chimeric.gdc_realn.bam 33364352 BAM chimeric harmonized CPTAC3 0e841d2e-3e6c-4b3e-a5d1-9eddd245e06a 890e3d9998ff5f0be0a018f45b5553cd { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor' } +C3L-01869.RNA-Seq.genomic.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 e21da563-d430-460a-a655-d92e04323d4a.rna_seq.genomic.gdc_realn.bam 10169834126 BAM genomic harmonized CPTAC3 1b06973d-4fe1-478e-a32b-d1f3ba97128d 73b8f918f99020a28b09c80275289f88 { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01869.RNA-Seq.genomic.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 577fd46f-8f6d-4717-bace-f14f7bebb807.rna_seq.genomic.gdc_realn.bam 8187868495 BAM genomic harmonized CPTAC3 c1c7ff21-425e-4e92-a906-0722a7d64cc5 659beec4bc0a08d67d4ca6bdc60bca1d { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor' } +C3L-01869.RNA-Seq.R1_L008.A C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L008_R1_001.fastq.gz 4407540594 FASTQ R1_L008 unaligned CPTAC3 ed8efa89-263f-41cf-ae47-b38d9488d76d 9894820cce6ec97bcc496a4338572e6a { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-01869.RNA-Seq.R1_L008.T C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3720636191 FASTQ R1_L008 unaligned CPTAC3 d36d5d2c-b956-4ffa-b021-18fc146e7a86 9c16c05ae9c3faa4770997dcad085112 { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-01869.RNA-Seq.R2_L008.A C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L008_R2_001.fastq.gz 4732447620 FASTQ R2_L008 unaligned CPTAC3 5341987b-d880-4778-8c4a-6c74cb1dfaf8 00303a2a5e8395d6ab3991973808744c { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-01869.RNA-Seq.R2_L008.T C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4160535503 FASTQ R2_L008 unaligned CPTAC3 88b9a1b5-a8ef-4650-9369-cb6e7a1e32cc d9d0236c47489c172b7143a5535868b1 { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-01869.RNA-Seq.transcriptome.A.hg38 C3L-01869 CCRCC RNA-Seq tissue_normal CPT0104270009 e21da563-d430-460a-a655-d92e04323d4a.rna_seq.transcriptome.gdc_realn.bam 11413765443 BAM transcriptome harmonized CPTAC3 405f27d9-b4e8-4fe3-894c-bbdab1d16e60 91cd46d091cf82522f75b7d5eae67ffc { 'aliquot_tag': 'ALQ_7dc7aa22', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01869.RNA-Seq.transcriptome.T.hg38 C3L-01869 CCRCC RNA-Seq tumor CPT0104250006 577fd46f-8f6d-4717-bace-f14f7bebb807.rna_seq.transcriptome.gdc_realn.bam 10603146099 BAM transcriptome harmonized CPTAC3 ccdcc420-82e9-498b-a364-7c1160dc5746 956b694d14390d6fec9451f29a68f37b { 'aliquot_tag': 'ALQ_97b8e4d3', 'gdc_sample_type': 'Primary Tumor' } C3L-01869.WGS.A C3L-01869 CCRCC WGS tissue_normal CPT0104270006 CPT0104270006.WholeGenome.RP-1303.bam 67473244432 BAM aligned CPTAC3 1e84ec1b-f768-410a-b7d9-a90607f0245d 670cc125c56c3c4cb0f28ea3c6be34f1 { 'aliquot_tag': 'ALQ_ed78b7b3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01869.WGS.A.hg38 C3L-01869 CCRCC WGS tissue_normal CPT0104270006 a4151231-1f11-41ef-b08f-fd3dff72745f_wgs_gdc_realn.bam 99435484503 BAM harmonized CPTAC3 f1cce340-3372-4bd7-8145-64bf86ece248 f6eca2a15018fdfca601019f0099c17c { 'aliquot_tag': 'ALQ_ed78b7b3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01869.WGS.N C3L-01869 CCRCC WGS blood_normal CPT0105100002 CPT0105100002.WholeGenome.RP-1303.bam 61375473413 BAM aligned CPTAC3 007c2364-f04d-460a-baac-76702d6b96cb 5886b28232ddda8c51e554f43145644a { 'aliquot_tag': 'ALQ_78d6d6a0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -8486,12 +9178,12 @@ C3L-01882.miRNA-Seq.T C3L-01882 CCRCC miRNA-Seq tumor CPT0092730006 180724_UNC32 C3L-01882.miRNA-Seq.T.hg38 C3L-01882 CCRCC miRNA-Seq tumor CPT0092730006 fc6180e6-500c-4e64-9b04-fe9eb97cfcfc_mirnaseq_gdc_realn.bam 284267447 BAM harmonized CPTAC3 d774bab3-3eb9-42b7-bfd5-0ddab9a570eb 51fcc378654f6d52e53892b9032eaf27 { 'aliquot_tag': 'ALQ_23d1ba92', 'gdc_sample_type': 'Primary Tumor' } C3L-01882.RNA-Seq.chimeric.A.hg38 C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 8aaa0b0b-629c-439f-91b7-56ae860b19ef.rna_seq.chimeric.gdc_realn.bam 71307096 BAM chimeric harmonized CPTAC3 87d6ce5b-40bd-4222-84d9-450ecd294e53 51bb62368ed18232767356b62cc08a52 { 'aliquot_tag': 'ALQ_91f16682', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01882.RNA-Seq.chimeric.T.hg38 C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 8f5f86b0-15ca-47ff-98ca-55935ebc8395.rna_seq.chimeric.gdc_realn.bam 45389622 BAM chimeric harmonized CPTAC3 ad3a41b5-9ee0-43f2-831d-298614817ff6 cc177e893d686da703e483d83328d8cc { 'aliquot_tag': 'ALQ_23d1ba92', 'gdc_sample_type': 'Primary Tumor' } -C3L-01882.RNA-Seq.genomic.A.hg38 C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 8aaa0b0b-629c-439f-91b7-56ae860b19ef.rna_seq.genomic.gdc_realn.bam 7442170549 BAM genomic harmonized CPTAC3 d1926575-ec52-4347-bc5b-372ba5df5d89 78435707b98734fb85e60daee9645e30 { 'aliquot_tag': 'ALQ_91f16682', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01882.RNA-Seq.genomic.T.hg38 C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 8f5f86b0-15ca-47ff-98ca-55935ebc8395.rna_seq.genomic.gdc_realn.bam 8657991142 BAM genomic harmonized CPTAC3 89f981a9-c4b1-4c00-906d-8115a044f0a6 65eda33d34b51320ae64a702c1a6b4ad { 'aliquot_tag': 'ALQ_23d1ba92', 'gdc_sample_type': 'Primary Tumor' } -C3L-01882.RNA-Seq.R1_L001.A C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L001_R1_001.fastq.gz 3765358803 FASTQ R1_L001 unaligned CPTAC3 97dc1c10-d86c-44f4-986a-a65ba31e7fb2 399cf004e5280326830f8f015788784e { 'aliquot_tag': 'ALQ_91f16682', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01882.RNA-Seq.R1_L004.T C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 171129_UNC32-K00270_0066_AHM25VBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 4021499098 FASTQ R1_L004 unaligned CPTAC3 0d439a00-5449-44f7-875e-94f947fbd83f 31d702430c220d1ef1aee666f09aa792 { 'aliquot_tag': 'ALQ_23d1ba92', 'gdc_sample_type': 'Primary Tumor' } -C3L-01882.RNA-Seq.R2_L001.A C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L001_R2_001.fastq.gz 3941652019 FASTQ R2_L001 unaligned CPTAC3 e9485e74-53cb-4c32-a6f2-21ff934c3a10 7ac5025f0e2e30101e71f8464ab34e6f { 'aliquot_tag': 'ALQ_91f16682', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01882.RNA-Seq.R2_L004.T C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 171129_UNC32-K00270_0066_AHM25VBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4422279627 FASTQ R2_L004 unaligned CPTAC3 1a47feb8-dcc3-40b3-8f04-36356277c7c7 dac4e8d4607f79938c21531f3c98b7a1 { 'aliquot_tag': 'ALQ_23d1ba92', 'gdc_sample_type': 'Primary Tumor' } +C3L-01882.RNA-Seq.genomic.A.hg38 C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 8aaa0b0b-629c-439f-91b7-56ae860b19ef.rna_seq.genomic.gdc_realn.bam 7442170549 BAM genomic harmonized CPTAC3 8a5afd30-60db-49f0-806c-d7d2428c4f25 78435707b98734fb85e60daee9645e30 { 'aliquot_tag': 'ALQ_91f16682', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01882.RNA-Seq.genomic.T.hg38 C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 8f5f86b0-15ca-47ff-98ca-55935ebc8395.rna_seq.genomic.gdc_realn.bam 8657991142 BAM genomic harmonized CPTAC3 acfdb98a-2944-47dd-9667-eee2a172371d 65eda33d34b51320ae64a702c1a6b4ad { 'aliquot_tag': 'ALQ_23d1ba92', 'gdc_sample_type': 'Primary Tumor' } +C3L-01882.RNA-Seq.R1_L001.A C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L001_R1_001.fastq.gz 3765358803 FASTQ R1_L001 unaligned CPTAC3 97dc1c10-d86c-44f4-986a-a65ba31e7fb2 399cf004e5280326830f8f015788784e { 'aliquot_tag': 'ALQ_91f16682', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-01882.RNA-Seq.R1_L004.T C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 171129_UNC32-K00270_0066_AHM25VBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 4021499098 FASTQ R1_L004 unaligned CPTAC3 0d439a00-5449-44f7-875e-94f947fbd83f 31d702430c220d1ef1aee666f09aa792 { 'aliquot_tag': 'ALQ_23d1ba92', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01882.RNA-Seq.R2_L001.A C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L001_R2_001.fastq.gz 3941652019 FASTQ R2_L001 unaligned CPTAC3 e9485e74-53cb-4c32-a6f2-21ff934c3a10 7ac5025f0e2e30101e71f8464ab34e6f { 'aliquot_tag': 'ALQ_91f16682', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-01882.RNA-Seq.R2_L004.T C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 171129_UNC32-K00270_0066_AHM25VBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4422279627 FASTQ R2_L004 unaligned CPTAC3 1a47feb8-dcc3-40b3-8f04-36356277c7c7 dac4e8d4607f79938c21531f3c98b7a1 { 'aliquot_tag': 'ALQ_23d1ba92', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01882.RNA-Seq.transcriptome.A.hg38 C3L-01882 CCRCC RNA-Seq tissue_normal CPT0092740006 8aaa0b0b-629c-439f-91b7-56ae860b19ef.rna_seq.transcriptome.gdc_realn.bam 9740008583 BAM transcriptome harmonized CPTAC3 53a676c8-c4fc-4059-9d20-b5a5c86f5270 36b602a505a8ed53e74c7a4071211a49 { 'aliquot_tag': 'ALQ_91f16682', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01882.RNA-Seq.transcriptome.T.hg38 C3L-01882 CCRCC RNA-Seq tumor CPT0092730006 8f5f86b0-15ca-47ff-98ca-55935ebc8395.rna_seq.transcriptome.gdc_realn.bam 9957814251 BAM transcriptome harmonized CPTAC3 582a2a36-71ec-45cc-88ed-8faa9aa4952b aaae4bd6328eda24c1bef76c620a2f92 { 'aliquot_tag': 'ALQ_23d1ba92', 'gdc_sample_type': 'Primary Tumor' } C3L-01882.WGS.A C3L-01882 CCRCC WGS tissue_normal CPT0092740009 CPT0092740009.WholeGenome.RP-1303.bam 69775688544 BAM aligned CPTAC3 ad17b3b3-6fa0-4a4f-943c-e5212e739d99 23d33f11fcff1c373518715a1222da90 { 'aliquot_tag': 'ALQ_14e7b13', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -8512,16 +9204,16 @@ C3L-01883.miRNA-Seq.A C3L-01883 SAR miRNA-Seq tissue_normal CPT0092390008 181113 C3L-01883.miRNA-Seq.A.hg38 C3L-01883 SAR miRNA-Seq tissue_normal CPT0092390008 5747ba2c-bb16-4db2-97b5-a0dbe5443486_mirnaseq_gdc_realn.bam 198969723 BAM harmonized CPTAC3 a73d6ce6-2688-4a61-a1fa-b7ed466338d1 7542a832888c37b31b722db2787b6f06 { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01883.miRNA-Seq.T C3L-01883 SAR miRNA-Seq tumor CPT0092360006 180724_UNC32-K00270_0106_BHWK3MBBXX_CAGGCG_S9_L007_R1_001.unaln.bam 196056013 BAM unaligned CPTAC3 57263dbf-b7e3-4c20-ab93-ce095a7a42ba 05e19150aea5c72c37139318987c1c59 { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor' } C3L-01883.miRNA-Seq.T.hg38 C3L-01883 SAR miRNA-Seq tumor CPT0092360006 53a3a482-8e90-4f68-85c8-5227250c8046_mirnaseq_gdc_realn.bam 217059723 BAM harmonized CPTAC3 951dddf6-704b-4f46-ae39-00cfaf6ad95b 16032013ba5d4a2f68fff7602d3ccda0 { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01883.RNA-Seq.chimeric.A.hg38 C3L-01883 SAR RNA-Seq tissue_normal CPT0092390008 17b861ce-97f8-489d-b24d-16e359659ae9.rna_seq.chimeric.gdc_realn.bam 17061897 BAM chimeric harmonized CPTAC3 0750b99e-f468-4ba8-a518-d09104dc3aa1 3f98372df482ffe0a234728fda4600f2 { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01883.RNA-Seq.chimeric.T.hg38 C3L-01883 SAR RNA-Seq tumor CPT0092360006 c77b7b63-74a9-4a94-9aa2-a231bc5dc74d.rna_seq.chimeric.gdc_realn.bam 52619741 BAM chimeric harmonized CPTAC3 a798e356-f4dd-42b8-9ee4-6c0b69f907a0 e30de323d56a06ea612bd32f805d0b47 { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01883.RNA-Seq.genomic.A.hg38 C3L-01883 SAR RNA-Seq tissue_normal CPT0092390008 17b861ce-97f8-489d-b24d-16e359659ae9.rna_seq.genomic.gdc_realn.bam 6431713189 BAM genomic harmonized CPTAC3 bd05ef55-59ff-4f0f-9bb8-b546f850d017 df8e4baa20189badbd7978a5a14b7b63 { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01883.RNA-Seq.genomic.T.hg38 C3L-01883 SAR RNA-Seq tumor CPT0092360006 c77b7b63-74a9-4a94-9aa2-a231bc5dc74d.rna_seq.genomic.gdc_realn.bam 8933730843 BAM genomic harmonized CPTAC3 58ee1d32-7ae0-4b79-adc8-58a16af8cdc4 621bd2dc7b935a4a84c8e05e6965854c { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01883.RNA-Seq.R1_L004.A C3L-01883 SAR RNA-Seq tissue_normal CPT0092390008 180606_UNC32-K00270_0097_AHVCKFBBXX_ATTCCT_S15_L004_R1_001.fastq.gz 2810553924 FASTQ R1_L004 unaligned CPTAC3 146f94b6-7a6c-47d6-947f-088282fc242e efc4fa5bd7a5a38eb86255ef175e063b { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01883.RNA-Seq.R1_L005.T C3L-01883 SAR RNA-Seq tumor CPT0092360006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L005_R1_001.fastq.gz 4047255014 FASTQ R1_L005 unaligned CPTAC3 ad07ae8c-02eb-489e-9f4b-699d849e058b c4ebfc0f72219b864320634512ea8ecb { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01883.RNA-Seq.R2_L004.A C3L-01883 SAR RNA-Seq tissue_normal CPT0092390008 180606_UNC32-K00270_0097_AHVCKFBBXX_ATTCCT_S15_L004_R2_001.fastq.gz 3102756334 FASTQ R2_L004 unaligned CPTAC3 77dd08fb-5d96-4106-a093-7fd798de8353 87e1bf32dccd779a1a5c16640d377a7c { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01883.RNA-Seq.R2_L005.T C3L-01883 SAR RNA-Seq tumor CPT0092360006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L005_R2_001.fastq.gz 4478428030 FASTQ R2_L005 unaligned CPTAC3 81fe4ae1-8f2d-4e55-819f-4be611633d45 88b233ac3909b6fc77583850aa67db80 { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01883.RNA-Seq.transcriptome.A.hg38 C3L-01883 SAR RNA-Seq tissue_normal CPT0092390008 17b861ce-97f8-489d-b24d-16e359659ae9.rna_seq.transcriptome.gdc_realn.bam 7475995771 BAM transcriptome harmonized CPTAC3 f2ca95d6-5b05-49e3-b129-3cc6fce5f8a3 620f3f7979d3dba3932007f36e2a75fc { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01883.RNA-Seq.transcriptome.T.hg38 C3L-01883 SAR RNA-Seq tumor CPT0092360006 c77b7b63-74a9-4a94-9aa2-a231bc5dc74d.rna_seq.transcriptome.gdc_realn.bam 9282538030 BAM transcriptome harmonized CPTAC3 25d499d0-5d0c-41d6-ad72-dd7d9cf7db8d 806d059c3c7c174cdc1b65d7bef31b1e { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-01883.RNA-Seq.chimeric.A.hg38 C3L-01883 SAR RNA-Seq tissue_normal CPT0092390008 8d5f4d9f-c972-4263-87f2-43c0cf15e4b2.rna_seq.chimeric.gdc_realn.bam 17050204 BAM chimeric harmonized CPTAC3 0781e889-d607-4806-b5ec-6f8cec801bcb c18162af12f8ae672bbdcd27f6cc2024 { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01883.RNA-Seq.chimeric.T.hg38 C3L-01883 SAR RNA-Seq tumor CPT0092360006 94b67d22-669e-4a50-93ae-881ef10cced3.rna_seq.chimeric.gdc_realn.bam 52601983 BAM chimeric harmonized CPTAC3 5098cda1-3e9c-4523-8531-7c0319ec088f df57d91d6f69b63764ac6eb706deb741 { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-01883.RNA-Seq.genomic.A.hg38 C3L-01883 SAR RNA-Seq tissue_normal CPT0092390008 8d5f4d9f-c972-4263-87f2-43c0cf15e4b2.rna_seq.genomic.gdc_realn.bam 6432534791 BAM genomic harmonized CPTAC3 647a9195-ee34-401e-92e3-39c8df5352a8 bdda5106d50d0090abf130dadcec8e3f { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01883.RNA-Seq.genomic.T.hg38 C3L-01883 SAR RNA-Seq tumor CPT0092360006 94b67d22-669e-4a50-93ae-881ef10cced3.rna_seq.genomic.gdc_realn.bam 8934029752 BAM genomic harmonized CPTAC3 99979f00-eb08-4861-9afd-9f4b42e02aad d87829b73b16627db452d6059e914f41 { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-01883.RNA-Seq.R1_L004.A C3L-01883 SAR RNA-Seq tissue_normal CPT0092390008 180606_UNC32-K00270_0097_AHVCKFBBXX_ATTCCT_S15_L004_R1_001.fastq.gz 2810553924 FASTQ R1_L004 unaligned CPTAC3 146f94b6-7a6c-47d6-947f-088282fc242e efc4fa5bd7a5a38eb86255ef175e063b { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-01883.RNA-Seq.R1_L005.T C3L-01883 SAR RNA-Seq tumor CPT0092360006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L005_R1_001.fastq.gz 4047255014 FASTQ R1_L005 unaligned CPTAC3 ad07ae8c-02eb-489e-9f4b-699d849e058b c4ebfc0f72219b864320634512ea8ecb { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01883.RNA-Seq.R2_L004.A C3L-01883 SAR RNA-Seq tissue_normal CPT0092390008 180606_UNC32-K00270_0097_AHVCKFBBXX_ATTCCT_S15_L004_R2_001.fastq.gz 3102756334 FASTQ R2_L004 unaligned CPTAC3 77dd08fb-5d96-4106-a093-7fd798de8353 87e1bf32dccd779a1a5c16640d377a7c { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-01883.RNA-Seq.R2_L005.T C3L-01883 SAR RNA-Seq tumor CPT0092360006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L005_R2_001.fastq.gz 4478428030 FASTQ R2_L005 unaligned CPTAC3 81fe4ae1-8f2d-4e55-819f-4be611633d45 88b233ac3909b6fc77583850aa67db80 { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01883.RNA-Seq.transcriptome.A.hg38 C3L-01883 SAR RNA-Seq tissue_normal CPT0092390008 8d5f4d9f-c972-4263-87f2-43c0cf15e4b2.rna_seq.transcriptome.gdc_realn.bam 8424576780 BAM transcriptome harmonized CPTAC3 1394ba0b-cd3e-4d58-95dc-c36ce3dbd1e4 86b6eb2d45fbf68dd0e81ced3ffd874a { 'aliquot_tag': 'ALQ_1548cd22', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01883.RNA-Seq.transcriptome.T.hg38 C3L-01883 SAR RNA-Seq tumor CPT0092360006 94b67d22-669e-4a50-93ae-881ef10cced3.rna_seq.transcriptome.gdc_realn.bam 10492096869 BAM transcriptome harmonized CPTAC3 901b8458-7e85-497d-b149-dfa28df1e048 995e4b603bd8fe6f842b35754d430de0 { 'aliquot_tag': 'ALQ_70a077f4', 'gdc_sample_type': 'Primary Tumor' } C3L-01883.WGS.A C3L-01883 SAR WGS tissue_normal CPT0092390013 CPT0092390013.WholeGenome.RP-1303.bam 62453015839 BAM aligned CPTAC3 1dfdb1df-5928-4f0d-9dd9-6a2798220137 8f57cd264022d7ab3de9fcea7f7830e0 { 'aliquot_tag': 'ALQ_9b8125eb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01883.WGS.A.hg38 C3L-01883 SAR WGS tissue_normal CPT0092390013 4c15fdab-3a10-41d6-b349-36d56cb09d01_wgs_gdc_realn.bam 90311747886 BAM harmonized CPTAC3 da59eeaf-573d-41a1-af7a-64c4536bcc63 687e47482e8ce3d1d2a21670a41676e9 { 'aliquot_tag': 'ALQ_9b8125eb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01883.WGS.N C3L-01883 SAR WGS blood_normal CPT0093780002 CPT0093780002.WholeGenome.RP-1303.bam 56228529791 BAM aligned CPTAC3 70fea0b0-0a4e-48cf-9d17-39b15658ac7f 8f660141bd0260b850e215bc86991932 { 'aliquot_tag': 'ALQ_f51b442e', 'gdc_sample_type': 'Blood Derived Normal' } @@ -8544,12 +9236,12 @@ C3L-01884.miRNA-Seq.T C3L-01884 LSCC miRNA-Seq tumor CPT0104360006 181219_UNC31- C3L-01884.miRNA-Seq.T.hg38 C3L-01884 LSCC miRNA-Seq tumor CPT0104360006 eeeff780-3306-4ff3-8420-ff4f4024d228_mirnaseq_gdc_realn.bam 231672049 BAM harmonized CPTAC3 97a3cb6b-faf1-4129-8585-d500708c82a0 f63d0c8dbfe2ef4fe6f87ec8c3654bba { 'aliquot_tag': 'ALQ_1b444da6', 'gdc_sample_type': 'Primary Tumor' } C3L-01884.RNA-Seq.chimeric.A.hg38 C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 270338c5-9bfa-41b3-9ffa-e48f48248d28.rna_seq.chimeric.gdc_realn.bam 19911106 BAM chimeric harmonized CPTAC3 1c3875b4-68f8-47bf-83d5-5216b82577ca 7bf8b846f8e5685663d939084acaaf24 { 'aliquot_tag': 'ALQ_34cbee56', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01884.RNA-Seq.chimeric.T.hg38 C3L-01884 LSCC RNA-Seq tumor CPT0104360006 1364e6b5-74a2-43ee-b89e-ab408c58de26.rna_seq.chimeric.gdc_realn.bam 41282836 BAM chimeric harmonized CPTAC3 659701b8-02c9-48f4-a3b7-ec69816a7d04 9c3333d0199534e9e674734151e29a94 { 'aliquot_tag': 'ALQ_1b444da6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01884.RNA-Seq.genomic.A.hg38 C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 270338c5-9bfa-41b3-9ffa-e48f48248d28.rna_seq.genomic.gdc_realn.bam 9071450802 BAM genomic harmonized CPTAC3 de96a1c3-01f9-4507-b0d9-51213919800b 081c16fc18c608887a4a7e0855ed1d31 { 'aliquot_tag': 'ALQ_34cbee56', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01884.RNA-Seq.genomic.T.hg38 C3L-01884 LSCC RNA-Seq tumor CPT0104360006 1364e6b5-74a2-43ee-b89e-ab408c58de26.rna_seq.genomic.gdc_realn.bam 9335307402 BAM genomic harmonized CPTAC3 757d1b55-78cd-4bcf-85dd-526deb8a4751 2da5b054cc0cc3dde49f38646947dab1 { 'aliquot_tag': 'ALQ_1b444da6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01884.RNA-Seq.R1_L003.A C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 180926_UNC31-K00269_0155_AHWN7WBBXX_TGACCA_S12_L003_R1_001.fastq.gz 3235983057 FASTQ R1_L003 unaligned CPTAC3 afdaedbd-53e9-4e2c-93ea-77935e66b214 05f183e855eeadd4306de17aa60ed4f4 { 'aliquot_tag': 'ALQ_34cbee56', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01884.RNA-Seq.R1_L005.T C3L-01884 LSCC RNA-Seq tumor CPT0104360006 180925_UNC32-K00270_0122_BHWNF7BBXX_ATCACG_S19_L005_R1_001.fastq.gz 4138015549 FASTQ R1_L005 unaligned CPTAC3 c0102389-3ddf-4d9d-bb6b-dd40fbc85ffe ef434050f9edbf27d4a48b2d35a8108b { 'aliquot_tag': 'ALQ_1b444da6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01884.RNA-Seq.R2_L003.A C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 180926_UNC31-K00269_0155_AHWN7WBBXX_TGACCA_S12_L003_R2_001.fastq.gz 3390937207 FASTQ R2_L003 unaligned CPTAC3 f626297e-f4a8-4afb-9804-39a21a85a5e6 0fe4653ff9e1b6532701a562f1bc5d13 { 'aliquot_tag': 'ALQ_34cbee56', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01884.RNA-Seq.R2_L005.T C3L-01884 LSCC RNA-Seq tumor CPT0104360006 180925_UNC32-K00270_0122_BHWNF7BBXX_ATCACG_S19_L005_R2_001.fastq.gz 4042165006 FASTQ R2_L005 unaligned CPTAC3 fb0a0c82-2ab6-46ea-bbc0-3841d4997d70 feef7ec8bbcb62b1c3f33cd25c321946 { 'aliquot_tag': 'ALQ_1b444da6', 'gdc_sample_type': 'Primary Tumor' } +C3L-01884.RNA-Seq.genomic.A.hg38 C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 270338c5-9bfa-41b3-9ffa-e48f48248d28.rna_seq.genomic.gdc_realn.bam 9071450802 BAM genomic harmonized CPTAC3 5343564d-df3d-4f3f-be2c-5d3408a6bc95 081c16fc18c608887a4a7e0855ed1d31 { 'aliquot_tag': 'ALQ_34cbee56', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01884.RNA-Seq.genomic.T.hg38 C3L-01884 LSCC RNA-Seq tumor CPT0104360006 1364e6b5-74a2-43ee-b89e-ab408c58de26.rna_seq.genomic.gdc_realn.bam 9335307402 BAM genomic harmonized CPTAC3 dbdf3663-c3ff-4e3e-aefb-8bff5a2a382f 2da5b054cc0cc3dde49f38646947dab1 { 'aliquot_tag': 'ALQ_1b444da6', 'gdc_sample_type': 'Primary Tumor' } +C3L-01884.RNA-Seq.R1_L003.A C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 180926_UNC31-K00269_0155_AHWN7WBBXX_TGACCA_S12_L003_R1_001.fastq.gz 3235983057 FASTQ R1_L003 unaligned CPTAC3 afdaedbd-53e9-4e2c-93ea-77935e66b214 05f183e855eeadd4306de17aa60ed4f4 { 'aliquot_tag': 'ALQ_34cbee56', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-01884.RNA-Seq.R1_L005.T C3L-01884 LSCC RNA-Seq tumor CPT0104360006 180925_UNC32-K00270_0122_BHWNF7BBXX_ATCACG_S19_L005_R1_001.fastq.gz 4138015549 FASTQ R1_L005 unaligned CPTAC3 c0102389-3ddf-4d9d-bb6b-dd40fbc85ffe ef434050f9edbf27d4a48b2d35a8108b { 'aliquot_tag': 'ALQ_1b444da6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01884.RNA-Seq.R2_L003.A C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 180926_UNC31-K00269_0155_AHWN7WBBXX_TGACCA_S12_L003_R2_001.fastq.gz 3390937207 FASTQ R2_L003 unaligned CPTAC3 f626297e-f4a8-4afb-9804-39a21a85a5e6 0fe4653ff9e1b6532701a562f1bc5d13 { 'aliquot_tag': 'ALQ_34cbee56', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-01884.RNA-Seq.R2_L005.T C3L-01884 LSCC RNA-Seq tumor CPT0104360006 180925_UNC32-K00270_0122_BHWNF7BBXX_ATCACG_S19_L005_R2_001.fastq.gz 4042165006 FASTQ R2_L005 unaligned CPTAC3 fb0a0c82-2ab6-46ea-bbc0-3841d4997d70 feef7ec8bbcb62b1c3f33cd25c321946 { 'aliquot_tag': 'ALQ_1b444da6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-01884.RNA-Seq.transcriptome.A.hg38 C3L-01884 LSCC RNA-Seq tissue_normal CPT0104380009 270338c5-9bfa-41b3-9ffa-e48f48248d28.rna_seq.transcriptome.gdc_realn.bam 8684651052 BAM transcriptome harmonized CPTAC3 40c55b74-6d45-4a5c-9de4-059c08085736 86826f118f3193bb6a655ad39e98dd3d { 'aliquot_tag': 'ALQ_34cbee56', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01884.RNA-Seq.transcriptome.T.hg38 C3L-01884 LSCC RNA-Seq tumor CPT0104360006 1364e6b5-74a2-43ee-b89e-ab408c58de26.rna_seq.transcriptome.gdc_realn.bam 10617597163 BAM transcriptome harmonized CPTAC3 e0506fad-2f0f-460f-a171-1c3cc2c45454 d4097b9022b3fc8b2ca030f163efbecd { 'aliquot_tag': 'ALQ_1b444da6', 'gdc_sample_type': 'Primary Tumor' } C3L-01884.WGS.A C3L-01884 LSCC WGS tissue_normal CPT0104380006 CPT0104380006.WholeGenome.RP-1303.bam 62682836844 BAM aligned CPTAC3 c0dd0a04-175f-4d3b-a402-715a16e7a913 9362823195e3ed7ef575634ab4bd0430 { 'aliquot_tag': 'ALQ_a474f3c7', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -8574,12 +9266,12 @@ C3L-01885.miRNA-Seq.T C3L-01885 CCRCC miRNA-Seq tumor CPT0092790006 180724_UNC32 C3L-01885.miRNA-Seq.T.hg38 C3L-01885 CCRCC miRNA-Seq tumor CPT0092790006 c5a04b18-0fcf-4eea-82b7-86172fd92e37_mirnaseq_gdc_realn.bam 224463536 BAM harmonized CPTAC3 f01efc28-95d9-4086-8b7e-347f3e2f2990 b5cd7282d814d468eebba122afd53eba { 'aliquot_tag': 'ALQ_6961a233', 'gdc_sample_type': 'Primary Tumor' } C3L-01885.RNA-Seq.chimeric.A.hg38 C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 c1c423f4-cb4a-4629-a0b1-91ca96432906.rna_seq.chimeric.gdc_realn.bam 60436984 BAM chimeric harmonized CPTAC3 05f9d01f-9b67-4424-b465-8f03519d778a 4269f843954f37c7244c1ab28dd97633 { 'aliquot_tag': 'ALQ_95277297', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01885.RNA-Seq.chimeric.T.hg38 C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 9695a2fd-3ce1-4fbf-924c-267664f14745.rna_seq.chimeric.gdc_realn.bam 50627938 BAM chimeric harmonized CPTAC3 0db3c1f5-94ba-430d-afd2-2639c5a6ff61 7eec9bbcaefdbe1037a96745c04e73ee { 'aliquot_tag': 'ALQ_6961a233', 'gdc_sample_type': 'Primary Tumor' } -C3L-01885.RNA-Seq.genomic.A.hg38 C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 c1c423f4-cb4a-4629-a0b1-91ca96432906.rna_seq.genomic.gdc_realn.bam 7835750260 BAM genomic harmonized CPTAC3 5ac0e242-3abe-417b-ae06-e03ba6cf8948 f4780cdae650f4332488a11de5798e35 { 'aliquot_tag': 'ALQ_95277297', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01885.RNA-Seq.genomic.T.hg38 C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 9695a2fd-3ce1-4fbf-924c-267664f14745.rna_seq.genomic.gdc_realn.bam 9097580946 BAM genomic harmonized CPTAC3 171305d7-c6e9-44d5-95e4-e1c10cc11274 29a185cda41c5afea50eda2f991de181 { 'aliquot_tag': 'ALQ_6961a233', 'gdc_sample_type': 'Primary Tumor' } -C3L-01885.RNA-Seq.R1_L001.A C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L001_R1_001.fastq.gz 3956939721 FASTQ R1_L001 unaligned CPTAC3 971ddf62-477c-4dda-8d41-d480ec464f34 5bf53ed716e5461fab0ddde829c90f2b { 'aliquot_tag': 'ALQ_95277297', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01885.RNA-Seq.R1_L004.T C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 171129_UNC32-K00270_0066_AHM25VBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 4220191441 FASTQ R1_L004 unaligned CPTAC3 8575eff6-7058-4a99-a065-66fa758b86a4 cba610ccba8a9b1b9149b4137cdde931 { 'aliquot_tag': 'ALQ_6961a233', 'gdc_sample_type': 'Primary Tumor' } -C3L-01885.RNA-Seq.R2_L001.A C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L001_R2_001.fastq.gz 4129271682 FASTQ R2_L001 unaligned CPTAC3 4e94b33d-c89e-4bd3-9066-f3cc316401c3 6eeee13d3357fed23c310bbf6ab59a53 { 'aliquot_tag': 'ALQ_95277297', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01885.RNA-Seq.R2_L004.T C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 171129_UNC32-K00270_0066_AHM25VBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 4439395784 FASTQ R2_L004 unaligned CPTAC3 c791a7fd-0554-4433-9ad9-9ec6349d8abc 7bd1ccc7e35f9b365a0f5404b2039c4c { 'aliquot_tag': 'ALQ_6961a233', 'gdc_sample_type': 'Primary Tumor' } +C3L-01885.RNA-Seq.genomic.A.hg38 C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 c1c423f4-cb4a-4629-a0b1-91ca96432906.rna_seq.genomic.gdc_realn.bam 7835750260 BAM genomic harmonized CPTAC3 5b0e358f-9ad2-4170-b20a-337b6c8d1b8c f4780cdae650f4332488a11de5798e35 { 'aliquot_tag': 'ALQ_95277297', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01885.RNA-Seq.genomic.T.hg38 C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 9695a2fd-3ce1-4fbf-924c-267664f14745.rna_seq.genomic.gdc_realn.bam 9097580946 BAM genomic harmonized CPTAC3 19cc5d15-ba85-4a25-a0fd-db92dcbbceaa 29a185cda41c5afea50eda2f991de181 { 'aliquot_tag': 'ALQ_6961a233', 'gdc_sample_type': 'Primary Tumor' } +C3L-01885.RNA-Seq.R1_L001.A C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L001_R1_001.fastq.gz 3956939721 FASTQ R1_L001 unaligned CPTAC3 971ddf62-477c-4dda-8d41-d480ec464f34 5bf53ed716e5461fab0ddde829c90f2b { 'aliquot_tag': 'ALQ_95277297', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-01885.RNA-Seq.R1_L004.T C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 171129_UNC32-K00270_0066_AHM25VBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 4220191441 FASTQ R1_L004 unaligned CPTAC3 8575eff6-7058-4a99-a065-66fa758b86a4 cba610ccba8a9b1b9149b4137cdde931 { 'aliquot_tag': 'ALQ_6961a233', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01885.RNA-Seq.R2_L001.A C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L001_R2_001.fastq.gz 4129271682 FASTQ R2_L001 unaligned CPTAC3 4e94b33d-c89e-4bd3-9066-f3cc316401c3 6eeee13d3357fed23c310bbf6ab59a53 { 'aliquot_tag': 'ALQ_95277297', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-01885.RNA-Seq.R2_L004.T C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 171129_UNC32-K00270_0066_AHM25VBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 4439395784 FASTQ R2_L004 unaligned CPTAC3 c791a7fd-0554-4433-9ad9-9ec6349d8abc 7bd1ccc7e35f9b365a0f5404b2039c4c { 'aliquot_tag': 'ALQ_6961a233', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-01885.RNA-Seq.transcriptome.A.hg38 C3L-01885 CCRCC RNA-Seq tissue_normal CPT0092800006 c1c423f4-cb4a-4629-a0b1-91ca96432906.rna_seq.transcriptome.gdc_realn.bam 9968158425 BAM transcriptome harmonized CPTAC3 6b354bc7-10e7-47b6-8595-7708a1282489 18ce9face4639c0e817fce84c03b3269 { 'aliquot_tag': 'ALQ_95277297', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01885.RNA-Seq.transcriptome.T.hg38 C3L-01885 CCRCC RNA-Seq tumor CPT0092790006 9695a2fd-3ce1-4fbf-924c-267664f14745.rna_seq.transcriptome.gdc_realn.bam 10764286878 BAM transcriptome harmonized CPTAC3 16d41a78-5a7b-4888-84dc-83efff69e35e 7e066dfcbc2d9dfa7bad1561029c200a { 'aliquot_tag': 'ALQ_6961a233', 'gdc_sample_type': 'Primary Tumor' } C3L-01885.WGS.A C3L-01885 CCRCC WGS tissue_normal CPT0092800009 CPT0092800009.WholeGenome.RP-1303.bam 57460839967 BAM aligned CPTAC3 de478ac0-eb77-430e-9492-82031bbdcf19 1a0c1696b01fca50ee0a2e6825bafe2d { 'aliquot_tag': 'ALQ_5986f06', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -8599,9 +9291,9 @@ C3L-01887.MethArray.Red.T C3L-01887 GBM Methylation Array tumor CPT0104330009 20 C3L-01887.miRNA-Seq.T C3L-01887 GBM miRNA-Seq tumor CPT0104330006 181108_UNC31-K00269_0163_BH23TVBBXY_CCAACA_S36_L007_R1_001.unaln.bam 201220264 BAM unaligned CPTAC3 a3d53839-634b-4530-a0aa-3c0e170c6419 e82ecbe61300e6be4784b3aabd98dac6 { 'aliquot_tag': 'ALQ_d3a4c2d6', 'gdc_sample_type': 'Primary Tumor' } C3L-01887.miRNA-Seq.T.hg38 C3L-01887 GBM miRNA-Seq tumor CPT0104330006 aa8c421b-296d-405e-b0a5-c1d210400066_mirnaseq_gdc_realn.bam 223138231 BAM harmonized CPTAC3 ba0536c7-b28a-4b31-86de-55c9ee4f64bc bb0a22725472c138a9cd295a1c9f5321 { 'aliquot_tag': 'ALQ_d3a4c2d6', 'gdc_sample_type': 'Primary Tumor' } C3L-01887.RNA-Seq.chimeric.T.hg38 C3L-01887 GBM RNA-Seq tumor CPT0104330006 5b664467-3c27-4bf4-90f8-4f518a153dd8.rna_seq.chimeric.gdc_realn.bam 34844321 BAM chimeric harmonized CPTAC3 33b7f6c2-4d17-4242-b8a7-bcc791d9f6e3 e78ba6a667f9c60fe3c72deef08f527b { 'aliquot_tag': 'ALQ_d3a4c2d6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01887.RNA-Seq.genomic.T.hg38 C3L-01887 GBM RNA-Seq tumor CPT0104330006 5b664467-3c27-4bf4-90f8-4f518a153dd8.rna_seq.genomic.gdc_realn.bam 8258643698 BAM genomic harmonized CPTAC3 7e2f509e-128b-4fd2-8a73-5eb292f5df3b af4b38a0515d136c902a7f37382b93f0 { 'aliquot_tag': 'ALQ_d3a4c2d6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01887.RNA-Seq.R1_L007.T C3L-01887 GBM RNA-Seq tumor CPT0104330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R1_001.fastq.gz 3752130477 FASTQ R1_L007 unaligned CPTAC3 d3c22860-6d90-470c-afbb-b47b75db5f09 8752c59cd37e70e0ba526fdca7e740ba { 'aliquot_tag': 'ALQ_d3a4c2d6', 'gdc_sample_type': 'Primary Tumor' } -C3L-01887.RNA-Seq.R2_L007.T C3L-01887 GBM RNA-Seq tumor CPT0104330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R2_001.fastq.gz 3825927354 FASTQ R2_L007 unaligned CPTAC3 7d80520b-a0a8-4768-a8c0-2b23b35b0341 373f47bf8be5ffd5887a827e46a764de { 'aliquot_tag': 'ALQ_d3a4c2d6', 'gdc_sample_type': 'Primary Tumor' } +C3L-01887.RNA-Seq.genomic.T.hg38 C3L-01887 GBM RNA-Seq tumor CPT0104330006 5b664467-3c27-4bf4-90f8-4f518a153dd8.rna_seq.genomic.gdc_realn.bam 8258643698 BAM genomic harmonized CPTAC3 e4029310-5fd8-41eb-ad59-fd99323be308 af4b38a0515d136c902a7f37382b93f0 { 'aliquot_tag': 'ALQ_d3a4c2d6', 'gdc_sample_type': 'Primary Tumor' } +C3L-01887.RNA-Seq.R1_L007.T C3L-01887 GBM RNA-Seq tumor CPT0104330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R1_001.fastq.gz 3752130477 FASTQ R1_L007 unaligned CPTAC3 d3c22860-6d90-470c-afbb-b47b75db5f09 8752c59cd37e70e0ba526fdca7e740ba { 'aliquot_tag': 'ALQ_d3a4c2d6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-01887.RNA-Seq.R2_L007.T C3L-01887 GBM RNA-Seq tumor CPT0104330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L007_R2_001.fastq.gz 3825927354 FASTQ R2_L007 unaligned CPTAC3 7d80520b-a0a8-4768-a8c0-2b23b35b0341 373f47bf8be5ffd5887a827e46a764de { 'aliquot_tag': 'ALQ_d3a4c2d6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-01887.RNA-Seq.transcriptome.T.hg38 C3L-01887 GBM RNA-Seq tumor CPT0104330006 5b664467-3c27-4bf4-90f8-4f518a153dd8.rna_seq.transcriptome.gdc_realn.bam 8592920683 BAM transcriptome harmonized CPTAC3 c8b120d3-7e99-4297-9482-38fcbf72c334 769e1b529cdef656a3bea313e54aaf41 { 'aliquot_tag': 'ALQ_d3a4c2d6', 'gdc_sample_type': 'Primary Tumor' } C3L-01887.WGS.N C3L-01887 GBM WGS blood_normal CPT0105110002 CPT0105110002.WholeGenome.RP-1303.bam 55815489246 BAM aligned CPTAC3 5b7726df-2f6c-4db6-a780-cdd80ecce462 a476b0ae3faa7f088a6483fd12029053 { 'aliquot_tag': 'ALQ_45b6ff10', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01887.WGS.N.hg38 C3L-01887 GBM WGS blood_normal CPT0105110002 030a80ff-6a29-4599-b87a-c0811c028057_wgs_gdc_realn.bam 83145630508 BAM harmonized CPTAC3 9f992d65-6bb5-473e-a664-1a817a7eec2e 99dfed0b5847e5fa3099ffe113d0af21 { 'aliquot_tag': 'ALQ_45b6ff10', 'gdc_sample_type': 'Blood Derived Normal' } @@ -8621,12 +9313,12 @@ C3L-01889.miRNA-Seq.T C3L-01889 LUAD miRNA-Seq tumor CPT0092240006 180724_UNC32- C3L-01889.miRNA-Seq.T.hg38 C3L-01889 LUAD miRNA-Seq tumor CPT0092240006 1ebfaf10-1622-4d07-8bc5-87b730c272dc_mirnaseq_gdc_realn.bam 227760459 BAM harmonized CPTAC3 bbf74c6b-0a54-42a1-bd66-80e2acba0432 34992fa0433b7e70a0a1a2dd546b5dbe { 'aliquot_tag': 'ALQ_c13cf731', 'gdc_sample_type': 'Primary Tumor' } C3L-01889.RNA-Seq.chimeric.A.hg38 C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 4828a263-cf82-4d96-a534-f92d2a3f8705.rna_seq.chimeric.gdc_realn.bam 55526078 BAM chimeric harmonized CPTAC3 9e7f971a-ceed-4c1c-9ea3-daec4f723e79 7bf20940a06a046eebe4377001bacfc0 { 'aliquot_tag': 'ALQ_fc5cde81', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01889.RNA-Seq.chimeric.T.hg38 C3L-01889 LUAD RNA-Seq tumor CPT0092240006 6a8dca22-ab18-4010-aac4-1ea31b08ca19.rna_seq.chimeric.gdc_realn.bam 49578563 BAM chimeric harmonized CPTAC3 70d6995b-bedd-4387-a85b-42e0739c414d 27507ebeb2f40b973f42866ee2fa5850 { 'aliquot_tag': 'ALQ_c13cf731', 'gdc_sample_type': 'Primary Tumor' } -C3L-01889.RNA-Seq.genomic.A.hg38 C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 4828a263-cf82-4d96-a534-f92d2a3f8705.rna_seq.genomic.gdc_realn.bam 5295154842 BAM genomic harmonized CPTAC3 5806fdc4-1edc-43a0-af78-8ca6fc7a38b7 e0285763c58880e7d3619d749fa2d79c { 'aliquot_tag': 'ALQ_fc5cde81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01889.RNA-Seq.genomic.T.hg38 C3L-01889 LUAD RNA-Seq tumor CPT0092240006 6a8dca22-ab18-4010-aac4-1ea31b08ca19.rna_seq.genomic.gdc_realn.bam 9665624018 BAM genomic harmonized CPTAC3 44559bf9-a5be-4cb8-8837-5234fc55a34c 65101670220ef31204a2a06bb17e3a8d { 'aliquot_tag': 'ALQ_c13cf731', 'gdc_sample_type': 'Primary Tumor' } -C3L-01889.RNA-Seq.R1_L004.A C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R1_001.fastq.gz 2593602299 FASTQ R1_L004 unaligned CPTAC3 b451f11f-f844-4236-9ba0-116e8a60eb8e 80cffe4785b536d2d21ea903b57c957f { 'aliquot_tag': 'ALQ_fc5cde81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01889.RNA-Seq.R1_L006.T C3L-01889 LUAD RNA-Seq tumor CPT0092240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L006_R1_001.fastq.gz 4426449980 FASTQ R1_L006 unaligned CPTAC3 82fdf3eb-3eb7-4306-b018-0301e1a5d687 9f2f3d54c949a2671d8a76424d4f79cf { 'aliquot_tag': 'ALQ_c13cf731', 'gdc_sample_type': 'Primary Tumor' } -C3L-01889.RNA-Seq.R2_L004.A C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R2_001.fastq.gz 2825476482 FASTQ R2_L004 unaligned CPTAC3 682eb12d-02fc-48e0-b83e-fb4dbeac16a6 9e3359cfa3b7a25fd83721ddb6ab3438 { 'aliquot_tag': 'ALQ_fc5cde81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01889.RNA-Seq.R2_L006.T C3L-01889 LUAD RNA-Seq tumor CPT0092240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L006_R2_001.fastq.gz 4894117818 FASTQ R2_L006 unaligned CPTAC3 c247d46d-1ef8-48a2-9564-41c2122d671d c66726f80411991f948d2d17a8481160 { 'aliquot_tag': 'ALQ_c13cf731', 'gdc_sample_type': 'Primary Tumor' } +C3L-01889.RNA-Seq.genomic.A.hg38 C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 4828a263-cf82-4d96-a534-f92d2a3f8705.rna_seq.genomic.gdc_realn.bam 5295154842 BAM genomic harmonized CPTAC3 1d3a9e67-d8a2-447e-94c1-86a7b5199814 e0285763c58880e7d3619d749fa2d79c { 'aliquot_tag': 'ALQ_fc5cde81', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01889.RNA-Seq.genomic.T.hg38 C3L-01889 LUAD RNA-Seq tumor CPT0092240006 6a8dca22-ab18-4010-aac4-1ea31b08ca19.rna_seq.genomic.gdc_realn.bam 9665624018 BAM genomic harmonized CPTAC3 2b2d6f9d-75b6-43df-9316-20bbf5597167 65101670220ef31204a2a06bb17e3a8d { 'aliquot_tag': 'ALQ_c13cf731', 'gdc_sample_type': 'Primary Tumor' } +C3L-01889.RNA-Seq.R1_L004.A C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R1_001.fastq.gz 2593602299 FASTQ R1_L004 unaligned CPTAC3 b451f11f-f844-4236-9ba0-116e8a60eb8e 80cffe4785b536d2d21ea903b57c957f { 'aliquot_tag': 'ALQ_fc5cde81', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-01889.RNA-Seq.R1_L006.T C3L-01889 LUAD RNA-Seq tumor CPT0092240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L006_R1_001.fastq.gz 4426449980 FASTQ R1_L006 unaligned CPTAC3 82fdf3eb-3eb7-4306-b018-0301e1a5d687 9f2f3d54c949a2671d8a76424d4f79cf { 'aliquot_tag': 'ALQ_c13cf731', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01889.RNA-Seq.R2_L004.A C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 171215_UNC32-K00270_0072_AHN3THBBXX_GTTTCG_S14_L004_R2_001.fastq.gz 2825476482 FASTQ R2_L004 unaligned CPTAC3 682eb12d-02fc-48e0-b83e-fb4dbeac16a6 9e3359cfa3b7a25fd83721ddb6ab3438 { 'aliquot_tag': 'ALQ_fc5cde81', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-01889.RNA-Seq.R2_L006.T C3L-01889 LUAD RNA-Seq tumor CPT0092240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTTGA_S4_L006_R2_001.fastq.gz 4894117818 FASTQ R2_L006 unaligned CPTAC3 c247d46d-1ef8-48a2-9564-41c2122d671d c66726f80411991f948d2d17a8481160 { 'aliquot_tag': 'ALQ_c13cf731', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-01889.RNA-Seq.transcriptome.A.hg38 C3L-01889 LUAD RNA-Seq tissue_normal CPT0092250006 4828a263-cf82-4d96-a534-f92d2a3f8705.rna_seq.transcriptome.gdc_realn.bam 6657334396 BAM transcriptome harmonized CPTAC3 8e1c5dab-450e-4570-a2ee-18ecf268dea1 fc039e918d42f08836dc51c451676e21 { 'aliquot_tag': 'ALQ_fc5cde81', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01889.RNA-Seq.transcriptome.T.hg38 C3L-01889 LUAD RNA-Seq tumor CPT0092240006 6a8dca22-ab18-4010-aac4-1ea31b08ca19.rna_seq.transcriptome.gdc_realn.bam 10851206630 BAM transcriptome harmonized CPTAC3 bf34f99e-a69b-469a-8e93-ce1e03090e6d 606a2874046b4a2238b8b1c2cfca55a2 { 'aliquot_tag': 'ALQ_c13cf731', 'gdc_sample_type': 'Primary Tumor' } C3L-01889.WGS.A C3L-01889 LUAD WGS tissue_normal CPT0092250009 CPT0092250009.WholeGenome.RP-1303.bam 61028379434 BAM aligned CPTAC3 ebb51687-65a8-403a-b0b3-78a47c6386bb 19186c781814180f4765665089450428 { 'aliquot_tag': 'ALQ_6ce3c310', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -8650,11 +9342,11 @@ C3L-01890.miRNA-Seq.T.hg38 C3L-01890 LUAD miRNA-Seq tumor CPT0092930006 03d6b2d3 C3L-01890.RNA-Seq.chimeric.A.hg38 C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 ecf9b09f-659e-43c1-bc2c-7a4f1e97aec5.rna_seq.chimeric.gdc_realn.bam 92646272 BAM chimeric harmonized CPTAC3 6f91d261-89ec-46de-9cae-60e50d645d0a 38e77f64c115779de030a351059c5475 { 'aliquot_tag': 'ALQ_abfb07f2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01890.RNA-Seq.chimeric.T.hg38 C3L-01890 LUAD RNA-Seq tumor CPT0092930006 c8484759-c661-44aa-abf3-ce09cc247587.rna_seq.chimeric.gdc_realn.bam 39090557 BAM chimeric harmonized CPTAC3 3a67231f-5a10-4daf-a94e-d4dbce61a40a 32fedb5be6e415320f3f694d89e8a20b { 'aliquot_tag': 'ALQ_19dbdbe2', 'gdc_sample_type': 'Primary Tumor' } C3L-01890.RNA-Seq.genomic.A.hg38 C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 ecf9b09f-659e-43c1-bc2c-7a4f1e97aec5.rna_seq.genomic.gdc_realn.bam 10855732567 BAM genomic harmonized CPTAC3 5038cfb2-bc06-4d21-b31c-43602ebd71c1 d1f3d6580b06907c58c019bebf15ffc3 { 'aliquot_tag': 'ALQ_abfb07f2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01890.RNA-Seq.genomic.T.hg38 C3L-01890 LUAD RNA-Seq tumor CPT0092930006 c8484759-c661-44aa-abf3-ce09cc247587.rna_seq.genomic.gdc_realn.bam 7575863907 BAM genomic harmonized CPTAC3 446f85ba-ae57-42db-aef9-d585b7551679 623f2e2e6ea20ce178e22fd9a402ceec { 'aliquot_tag': 'ALQ_19dbdbe2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01890.RNA-Seq.R1_L003.T C3L-01890 LUAD RNA-Seq tumor CPT0092930006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3018396631 FASTQ R1_L003 unaligned CPTAC3 2544d040-1537-4cb8-a8da-61e9395d927a cdbf156d5c59972ec3d44c05a9942872 { 'aliquot_tag': 'ALQ_19dbdbe2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01890.RNA-Seq.R1_L004.A C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 171215_UNC32-K00270_0073_BHN3NFBBXX_TAGCTT_S13_L004_R1_001.fastq.gz 4705946368 FASTQ R1_L004 unaligned CPTAC3 351b2fd3-ccff-4eff-8739-78092fee6813 2cd21dd60598aa5bd19bfc688e87abc8 { 'aliquot_tag': 'ALQ_abfb07f2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01890.RNA-Seq.R2_L003.T C3L-01890 LUAD RNA-Seq tumor CPT0092930006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3102211399 FASTQ R2_L003 unaligned CPTAC3 b7e27776-3943-4b5f-898c-646a79090347 f2a74b28ac0754c2f1b4647faa8251df { 'aliquot_tag': 'ALQ_19dbdbe2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01890.RNA-Seq.R2_L004.A C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 171215_UNC32-K00270_0073_BHN3NFBBXX_TAGCTT_S13_L004_R2_001.fastq.gz 5205121434 FASTQ R2_L004 unaligned CPTAC3 a366c7b2-49ec-434d-9877-0dacdd9d19f7 eae830c709b45615f3339ba5f3a06d12 { 'aliquot_tag': 'ALQ_abfb07f2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01890.RNA-Seq.genomic.T.hg38 C3L-01890 LUAD RNA-Seq tumor CPT0092930006 c8484759-c661-44aa-abf3-ce09cc247587.rna_seq.genomic.gdc_realn.bam 7575863907 BAM genomic harmonized CPTAC3 74a683e7-c344-4b25-be72-36ee200a7b5d 623f2e2e6ea20ce178e22fd9a402ceec { 'aliquot_tag': 'ALQ_19dbdbe2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01890.RNA-Seq.R1_L003.T C3L-01890 LUAD RNA-Seq tumor CPT0092930006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGAAA_S11_L003_R1_001.fastq.gz 3018396631 FASTQ R1_L003 unaligned CPTAC3 2544d040-1537-4cb8-a8da-61e9395d927a cdbf156d5c59972ec3d44c05a9942872 { 'aliquot_tag': 'ALQ_19dbdbe2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01890.RNA-Seq.R1_L004.A C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 171215_UNC32-K00270_0073_BHN3NFBBXX_TAGCTT_S13_L004_R1_001.fastq.gz 4705946368 FASTQ R1_L004 unaligned CPTAC3 351b2fd3-ccff-4eff-8739-78092fee6813 2cd21dd60598aa5bd19bfc688e87abc8 { 'aliquot_tag': 'ALQ_abfb07f2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-01890.RNA-Seq.R2_L003.T C3L-01890 LUAD RNA-Seq tumor CPT0092930006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGAAA_S11_L003_R2_001.fastq.gz 3102211399 FASTQ R2_L003 unaligned CPTAC3 b7e27776-3943-4b5f-898c-646a79090347 f2a74b28ac0754c2f1b4647faa8251df { 'aliquot_tag': 'ALQ_19dbdbe2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01890.RNA-Seq.R2_L004.A C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 171215_UNC32-K00270_0073_BHN3NFBBXX_TAGCTT_S13_L004_R2_001.fastq.gz 5205121434 FASTQ R2_L004 unaligned CPTAC3 a366c7b2-49ec-434d-9877-0dacdd9d19f7 eae830c709b45615f3339ba5f3a06d12 { 'aliquot_tag': 'ALQ_abfb07f2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-01890.RNA-Seq.transcriptome.A.hg38 C3L-01890 LUAD RNA-Seq tissue_normal CPT0092940006 ecf9b09f-659e-43c1-bc2c-7a4f1e97aec5.rna_seq.transcriptome.gdc_realn.bam 10847448525 BAM transcriptome harmonized CPTAC3 4bc48cd2-6761-4b44-a8db-17d3f041c11a 57363c9939bf56b746c364eaafcddf09 { 'aliquot_tag': 'ALQ_abfb07f2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01890.RNA-Seq.transcriptome.T.hg38 C3L-01890 LUAD RNA-Seq tumor CPT0092930006 c8484759-c661-44aa-abf3-ce09cc247587.rna_seq.transcriptome.gdc_realn.bam 6389278993 BAM transcriptome harmonized CPTAC3 54c44c5f-5174-40de-8237-0c58daa18ddb 9d0c1e0d07ee63cffb22ca683dc2251a { 'aliquot_tag': 'ALQ_19dbdbe2', 'gdc_sample_type': 'Primary Tumor' } C3L-01890.WGS.A C3L-01890 LUAD WGS tissue_normal CPT0092940009 CPT0092940009.WholeGenome.RP-1303.bam 51906006480 BAM aligned CPTAC3 88d4a2be-69ec-4bfa-a48e-d94afd394cf8 1f687922e0a7c508adc30135e68b89cd { 'aliquot_tag': 'ALQ_3b441a63', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -8671,13 +9363,16 @@ C3L-01913.MethArray.Green.T C3L-01913 UCEC Methylation Array tumor CPT0092690009 C3L-01913.MethArray.Red.T C3L-01913 UCEC Methylation Array tumor CPT0092690009 202234380058_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 e74878ce-4ce8-4615-9b1e-313117a458f7 df9a43e8bad7ed12b5e9f3fb85b31a0f { 'aliquot_tag': 'ALQ_32826c07', 'gdc_sample_type': 'Primary Tumor' } C3L-01913.miRNA-Seq.T C3L-01913 UCEC miRNA-Seq tumor CPT0092690006 180724_UNC32-K00270_0106_BHWK3MBBXX_CTAGCT_S14_L007_R1_001.unaln.bam 231214334 BAM unaligned CPTAC3 8e105962-6212-430c-bb5b-a95b3e2257ce 54f8d6ef8971d4e2c1a7ad2de2175600 { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor' } C3L-01913.miRNA-Seq.T.hg38 C3L-01913 UCEC miRNA-Seq tumor CPT0092690006 c1f2d755-1831-41fc-adcf-d9b578376cca_mirnaseq_gdc_realn.bam 248897404 BAM harmonized CPTAC3 2a35f378-03be-4621-a9e8-47efd7292f3f b60cc714b102bdd9b3c4143bdc15940c { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor' } -C3L-01913.RNA-Seq.chimeric.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 6e6510c4-2062-4b91-85df-862a08479e26.rna_seq.chimeric.gdc_realn.bam 59519082 BAM chimeric harmonized CPTAC3 0859ed33-0aa2-4199-9373-574363321d7a 9b446453c46c842aecd592db6de3d0d3 { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor' } -C3L-01913.RNA-Seq.genomic.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 6e6510c4-2062-4b91-85df-862a08479e26.rna_seq.genomic.gdc_realn.bam 9453134113 BAM genomic harmonized CPTAC3 948120b8-1157-4a33-9d61-e089cc95c3bb 54468ce6df3e29889d630c5f6c69cd36 { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor' } -C3L-01913.RNA-Seq.R1_L004.T C3L-01913 UCEC RNA-Seq tumor CPT0092690006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4601248333 FASTQ R1_L004 unaligned CPTAC3 70e30d18-6c3f-4549-b219-5b0e97be092c 869c7634d9254cb68190cce263b39932 { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor' } -C3L-01913.RNA-Seq.R1_.T C3L-01913 UCEC RNA-Seq tumor CPT0350090001 20210723_P2_F7_WB7988-plate2_S67_R1_001.fastq.gz 4350941540 FASTQ R1_ unaligned CPTAC3 bd2fe1cb-dbc2-4498-a69e-fe07a9f191f1 86eb626e5e17b342c1b8b78f12710555 { 'aliquot_tag': 'ALQ_13bd3f8b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01913.RNA-Seq.R2_L004.T C3L-01913 UCEC RNA-Seq tumor CPT0092690006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 5047006926 FASTQ R2_L004 unaligned CPTAC3 8df62ec5-cdc4-40d0-8b10-161dd4b1efb2 cc2081d3c861e2a1c532c5477076f67e { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor' } -C3L-01913.RNA-Seq.R2_.T C3L-01913 UCEC RNA-Seq tumor CPT0350090001 20210723_P2_F7_WB7988-plate2_S67_R2_001.fastq.gz 4480725024 FASTQ R2_ unaligned CPTAC3 0213df11-ce3d-41e5-aa14-b5654801f0a7 95477b65b6d1cbd7e59b78222cbc5e80 { 'aliquot_tag': 'ALQ_13bd3f8b', 'gdc_sample_type': 'Primary Tumor' } -C3L-01913.RNA-Seq.transcriptome.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 6e6510c4-2062-4b91-85df-862a08479e26.rna_seq.transcriptome.gdc_realn.bam 10026569998 BAM transcriptome harmonized CPTAC3 b8bf53b6-1e17-4586-819d-5c681125ccb7 043699d935674b0bf0e85d5bbd069691 { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor' } +C3L-01913.RNA-Seq.chimeric.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 59497987-f5c1-4fdb-af16-af4139cee8e5.rna_seq.chimeric.gdc_realn.bam 59515210 BAM chimeric harmonized CPTAC3 8c99de2d-07b7-43f0-9466-824e59fcc106 b85e799344b28d56025c07d0351818cb { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor' } +C3L-01913.RNA-Seq.chimeric.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0350090001 e85b56da-ccbb-4028-993d-e6a2e547640e.rna_seq.chimeric.gdc_realn.bam 163055348 BAM chimeric harmonized CPTAC3 a95dd0d9-bcb6-442e-b41e-1c3facce340f bbfc9ecbc944b45f31f795e8a9d595d5 { 'aliquot_tag': 'ALQ_13bd3f8b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01913.RNA-Seq.genomic.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 59497987-f5c1-4fdb-af16-af4139cee8e5.rna_seq.genomic.gdc_realn.bam 9453913298 BAM genomic harmonized CPTAC3 839e2de6-e1ba-497f-83b9-e244231370d7 e5816f51c07a2ea8edfc228568e96528 { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor' } +C3L-01913.RNA-Seq.genomic.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0350090001 e85b56da-ccbb-4028-993d-e6a2e547640e.rna_seq.genomic.gdc_realn.bam 7803910955 BAM genomic harmonized CPTAC3 9115a129-a44b-4e5a-b7a1-42ab0f8ded86 4ba58ed82c4c8df7fdbe567e38bc08fe { 'aliquot_tag': 'ALQ_13bd3f8b', 'gdc_sample_type': 'Primary Tumor' } +C3L-01913.RNA-Seq.R1_L004.T C3L-01913 UCEC RNA-Seq tumor CPT0092690006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4601248333 FASTQ R1_L004 unaligned CPTAC3 70e30d18-6c3f-4549-b219-5b0e97be092c 869c7634d9254cb68190cce263b39932 { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-01913.RNA-Seq.R2_L004.T C3L-01913 UCEC RNA-Seq tumor CPT0092690006 171129_UNC32-K00270_0066_AHM25VBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 5047006926 FASTQ R2_L004 unaligned CPTAC3 8df62ec5-cdc4-40d0-8b10-161dd4b1efb2 cc2081d3c861e2a1c532c5477076f67e { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-01913.RNA-Seq.T C3L-01913 UCEC RNA-Seq tumor CPT0350090001 20210723_P2_F7_WB7988-plate2_S67_R1_001.fastq.gz 4350941540 FASTQ unaligned CPTAC3 bd2fe1cb-dbc2-4498-a69e-fe07a9f191f1 86eb626e5e17b342c1b8b78f12710555 +C3L-01913.RNA-Seq.T C3L-01913 UCEC RNA-Seq tumor CPT0350090001 20210723_P2_F7_WB7988-plate2_S67_R2_001.fastq.gz 4480725024 FASTQ unaligned CPTAC3 0213df11-ce3d-41e5-aa14-b5654801f0a7 95477b65b6d1cbd7e59b78222cbc5e80 +C3L-01913.RNA-Seq.transcriptome.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0092690006 59497987-f5c1-4fdb-af16-af4139cee8e5.rna_seq.transcriptome.gdc_realn.bam 11496008526 BAM transcriptome harmonized CPTAC3 d57ecc7e-a94d-43ee-87f1-b732d3178c8c b8ac8ecf1b397a8192b47a746b98e0c3 { 'aliquot_tag': 'ALQ_a23d7196', 'gdc_sample_type': 'Primary Tumor' } +C3L-01913.RNA-Seq.transcriptome.T.hg38 C3L-01913 UCEC RNA-Seq tumor CPT0350090001 e85b56da-ccbb-4028-993d-e6a2e547640e.rna_seq.transcriptome.gdc_realn.bam 3846723872 BAM transcriptome harmonized CPTAC3 bcf719bd-bf97-49cf-b714-02aacd63959d b22c6042d44d68bc23895f4d99948136 { 'aliquot_tag': 'ALQ_13bd3f8b', 'gdc_sample_type': 'Primary Tumor' } C3L-01913.WGS.N C3L-01913 UCEC WGS blood_normal CPT0093810002 CPT0093810002.WholeGenome.RP-1303.bam 62236482235 BAM aligned CPTAC3 854e3fe8-3cc8-40fd-a73e-f565dae25be6 78ecee61d995d88609332e857dcc44be { 'aliquot_tag': 'ALQ_95d948a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01913.WGS.N.hg38 C3L-01913 UCEC WGS blood_normal CPT0093810002 4801be53-7ce4-439a-8b46-0bfed31c515d_wgs_gdc_realn.bam 90000306221 BAM harmonized CPTAC3 191d2fa1-f55d-42e0-bb15-2849f3b31368 50c627ab36cf21c2c9d620cbb80df1c9 { 'aliquot_tag': 'ALQ_95d948a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01913.WGS.T C3L-01913 UCEC WGS tumor CPT0092690009 CPT0092690009.WholeGenome.RP-1303.bam 61328268688 BAM aligned CPTAC3 63b6033e-9ca5-4e1d-a38e-f09f5ed8ba01 ccb4a6682afbc24442d4d700baf907fb { 'aliquot_tag': 'ALQ_32826c07', 'gdc_sample_type': 'Primary Tumor' } @@ -8696,12 +9391,12 @@ C3L-01924.miRNA-Seq.T C3L-01924 LUAD miRNA-Seq tumor CPT0114660007 181119_UNC31- C3L-01924.miRNA-Seq.T.hg38 C3L-01924 LUAD miRNA-Seq tumor CPT0114660007 1796a55a-9b75-4a91-9a9d-e7477fd6bec7_mirnaseq_gdc_realn.bam 198915394 BAM harmonized CPTAC3 136d153c-b01c-4e8b-a7ce-88089157062e 61f29a75709c26af705ad9612f343b01 { 'aliquot_tag': 'ALQ_f024ec1d', 'gdc_sample_type': 'Primary Tumor' } C3L-01924.RNA-Seq.chimeric.A.hg38 C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 79c97524-eef2-485b-b921-bddf2bd65de8.rna_seq.chimeric.gdc_realn.bam 142559969 BAM chimeric harmonized CPTAC3 92d17ce8-95d1-434d-8f6e-4f73c12e8eec 866adfd379c44bd8894737a75495ad31 { 'aliquot_tag': 'ALQ_5734b5a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01924.RNA-Seq.chimeric.T.hg38 C3L-01924 LUAD RNA-Seq tumor CPT0114660007 485d9f58-e61b-4d7b-b4a1-9e58b992065c.rna_seq.chimeric.gdc_realn.bam 79399414 BAM chimeric harmonized CPTAC3 155e1674-741c-41ce-b48f-6939615b6b94 928a1a1a94a42403a4e9d96274c22a35 { 'aliquot_tag': 'ALQ_f024ec1d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01924.RNA-Seq.genomic.A.hg38 C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 79c97524-eef2-485b-b921-bddf2bd65de8.rna_seq.genomic.gdc_realn.bam 8413520089 BAM genomic harmonized CPTAC3 9934861f-18f7-489e-a3e4-12596f1adae8 a9b6b4231fa6fccc9b3870a6582c7940 { 'aliquot_tag': 'ALQ_5734b5a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01924.RNA-Seq.genomic.T.hg38 C3L-01924 LUAD RNA-Seq tumor CPT0114660007 485d9f58-e61b-4d7b-b4a1-9e58b992065c.rna_seq.genomic.gdc_realn.bam 9538924291 BAM genomic harmonized CPTAC3 8e2fbb6d-c5a7-449b-8964-8ff7d264d46f 9f4ce346fb4817b425ad555c319c2a28 { 'aliquot_tag': 'ALQ_f024ec1d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01924.RNA-Seq.R1_L003.A C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATTCCT_S9_L003_R1_001.fastq.gz 3994393963 FASTQ R1_L003 unaligned CPTAC3 47ebb3cc-4874-43d7-9b49-d50364c8f922 d1a393a9a8e1e9c364e37d11a7cf4bcc { 'aliquot_tag': 'ALQ_5734b5a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01924.RNA-Seq.R1_L005.T C3L-01924 LUAD RNA-Seq tumor CPT0114660007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTTTCG_S19_L005_R1_001.fastq.gz 3944862404 FASTQ R1_L005 unaligned CPTAC3 f3202189-6188-4c2c-b30b-220fb8f873a4 b43861f14178bf3ac1b3c89982c19326 { 'aliquot_tag': 'ALQ_f024ec1d', 'gdc_sample_type': 'Primary Tumor' } -C3L-01924.RNA-Seq.R2_L003.A C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATTCCT_S9_L003_R2_001.fastq.gz 4364633215 FASTQ R2_L003 unaligned CPTAC3 c7c5c55f-b29e-4831-8e07-8474fd44a183 1e2cb1dcec4337de9d4b1f95e2e95bfc { 'aliquot_tag': 'ALQ_5734b5a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01924.RNA-Seq.R2_L005.T C3L-01924 LUAD RNA-Seq tumor CPT0114660007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTTTCG_S19_L005_R2_001.fastq.gz 4424759148 FASTQ R2_L005 unaligned CPTAC3 42468ec2-89bb-4647-8314-6eb5b72c5dcf 116bfd3908240d30f9e66ffbbc96d3b7 { 'aliquot_tag': 'ALQ_f024ec1d', 'gdc_sample_type': 'Primary Tumor' } +C3L-01924.RNA-Seq.genomic.A.hg38 C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 79c97524-eef2-485b-b921-bddf2bd65de8.rna_seq.genomic.gdc_realn.bam 8413520089 BAM genomic harmonized CPTAC3 a4f764e0-433b-41fd-ba71-69794e1e043d a9b6b4231fa6fccc9b3870a6582c7940 { 'aliquot_tag': 'ALQ_5734b5a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01924.RNA-Seq.genomic.T.hg38 C3L-01924 LUAD RNA-Seq tumor CPT0114660007 485d9f58-e61b-4d7b-b4a1-9e58b992065c.rna_seq.genomic.gdc_realn.bam 9538924291 BAM genomic harmonized CPTAC3 3c6a5d52-3f28-4b1c-aeaf-fa1b2c045c4c 9f4ce346fb4817b425ad555c319c2a28 { 'aliquot_tag': 'ALQ_f024ec1d', 'gdc_sample_type': 'Primary Tumor' } +C3L-01924.RNA-Seq.R1_L003.A C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATTCCT_S9_L003_R1_001.fastq.gz 3994393963 FASTQ R1_L003 unaligned CPTAC3 47ebb3cc-4874-43d7-9b49-d50364c8f922 d1a393a9a8e1e9c364e37d11a7cf4bcc { 'aliquot_tag': 'ALQ_5734b5a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-01924.RNA-Seq.R1_L005.T C3L-01924 LUAD RNA-Seq tumor CPT0114660007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTTTCG_S19_L005_R1_001.fastq.gz 3944862404 FASTQ R1_L005 unaligned CPTAC3 f3202189-6188-4c2c-b30b-220fb8f873a4 b43861f14178bf3ac1b3c89982c19326 { 'aliquot_tag': 'ALQ_f024ec1d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01924.RNA-Seq.R2_L003.A C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATTCCT_S9_L003_R2_001.fastq.gz 4364633215 FASTQ R2_L003 unaligned CPTAC3 c7c5c55f-b29e-4831-8e07-8474fd44a183 1e2cb1dcec4337de9d4b1f95e2e95bfc { 'aliquot_tag': 'ALQ_5734b5a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-01924.RNA-Seq.R2_L005.T C3L-01924 LUAD RNA-Seq tumor CPT0114660007 171109_UNC31-K00269_0091_BHMFGTBBXX_GTTTCG_S19_L005_R2_001.fastq.gz 4424759148 FASTQ R2_L005 unaligned CPTAC3 42468ec2-89bb-4647-8314-6eb5b72c5dcf 116bfd3908240d30f9e66ffbbc96d3b7 { 'aliquot_tag': 'ALQ_f024ec1d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-01924.RNA-Seq.transcriptome.A.hg38 C3L-01924 LUAD RNA-Seq tissue_normal CPT0114690006 79c97524-eef2-485b-b921-bddf2bd65de8.rna_seq.transcriptome.gdc_realn.bam 10646268618 BAM transcriptome harmonized CPTAC3 5c3952b3-5264-4d88-abe0-1533130f61a3 bdc748c92aa105f6b6c3046a62c4b64d { 'aliquot_tag': 'ALQ_5734b5a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01924.RNA-Seq.transcriptome.T.hg38 C3L-01924 LUAD RNA-Seq tumor CPT0114660007 485d9f58-e61b-4d7b-b4a1-9e58b992065c.rna_seq.transcriptome.gdc_realn.bam 10236643935 BAM transcriptome harmonized CPTAC3 14848eaa-c911-4baf-8db8-b67adc810aae 5911948072817af288626e99d49e2cfe { 'aliquot_tag': 'ALQ_f024ec1d', 'gdc_sample_type': 'Primary Tumor' } C3L-01924.WGS.A C3L-01924 LUAD WGS tissue_normal CPT0114690009 CPT0114690009.WholeGenome.RP-1303.bam 57910130683 BAM aligned CPTAC3 498223a9-65b4-477f-95d5-69bccc62285d 9d905a6e92feda1d84bd49cca36dded3 { 'aliquot_tag': 'ALQ_95cc56cb', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -8721,12 +9416,15 @@ C3L-01925.MethArray.Red.T C3L-01925 UCEC Methylation Array tumor CPT0113690009 2 C3L-01925.miRNA-Seq.T C3L-01925 UCEC miRNA-Seq tumor CPT0113690006 181108_UNC31-K00269_0162_AH255GBBXY_AGTCAA_S37_L004_R1_001.unaln.bam 202959171 BAM unaligned CPTAC3 53d2cd8d-025a-4aeb-bc20-29bd7ef4a5c6 31d5f181957a71900a9784fbf5497316 { 'aliquot_tag': 'ALQ_c0d475d4', 'gdc_sample_type': 'Primary Tumor' } C3L-01925.miRNA-Seq.T.hg38 C3L-01925 UCEC miRNA-Seq tumor CPT0113690006 972e8bb4-5fec-49fd-bd6d-6b093a08df46_mirnaseq_gdc_realn.bam 225094293 BAM harmonized CPTAC3 3b339dc9-3143-47bb-ba30-818ed527d98b 0178952e6d0261260067afe6df4cb6d3 { 'aliquot_tag': 'ALQ_c0d475d4', 'gdc_sample_type': 'Primary Tumor' } C3L-01925.RNA-Seq.chimeric.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0113690006 a500a3d5-18d5-4587-b23c-660cc72d784f.rna_seq.chimeric.gdc_realn.bam 48830455 BAM chimeric harmonized CPTAC3 d6361c40-2b19-4b6b-982d-bb7059e8ebe2 9ee49b4bc66393cfb8e8d38b26f938af { 'aliquot_tag': 'ALQ_c0d475d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01925.RNA-Seq.genomic.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0113690006 a500a3d5-18d5-4587-b23c-660cc72d784f.rna_seq.genomic.gdc_realn.bam 8757986045 BAM genomic harmonized CPTAC3 5452e6e5-1afb-4dac-8d31-ecb664675ee1 822a050770e6b7c5ba56c5c4c47e1e63 { 'aliquot_tag': 'ALQ_c0d475d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01925.RNA-Seq.R1_L006.T C3L-01925 UCEC RNA-Seq tumor CPT0113690006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3863935837 FASTQ R1_L006 unaligned CPTAC3 49190371-ec2a-420f-a804-0931a346d206 945e2f9be6d5f170d69db929e6086bfd { 'aliquot_tag': 'ALQ_c0d475d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01925.RNA-Seq.R1_.T C3L-01925 UCEC RNA-Seq tumor CPT0336990001 20210729_P3_F8_WB7988-Plate3_S68_R1_001.fastq.gz 4891982146 FASTQ R1_ unaligned CPTAC3 ab378c65-4d59-4ed0-82ac-73788de1353f db42dfa5823b255b8538d1734700e74b { 'aliquot_tag': 'ALQ_910d52fe', 'gdc_sample_type': 'Primary Tumor' } -C3L-01925.RNA-Seq.R2_L006.T C3L-01925 UCEC RNA-Seq tumor CPT0113690006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTCAA_S23_L006_R2_001.fastq.gz 4262715660 FASTQ R2_L006 unaligned CPTAC3 c8dfbe14-a49c-4838-95c7-c9b9ed81633a fae4ed3c02b64640231cd03f7dcc312f { 'aliquot_tag': 'ALQ_c0d475d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01925.RNA-Seq.R2_.T C3L-01925 UCEC RNA-Seq tumor CPT0336990001 20210729_P3_F8_WB7988-Plate3_S68_R2_001.fastq.gz 5017968745 FASTQ R2_ unaligned CPTAC3 94266dde-525d-4c68-b8a1-366c98c8e111 ecfa7fa003e15f31c1345614075f2721 { 'aliquot_tag': 'ALQ_910d52fe', 'gdc_sample_type': 'Primary Tumor' } +C3L-01925.RNA-Seq.chimeric.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0336990001 ee570494-367c-4e2f-b015-d805bbd95b75.rna_seq.chimeric.gdc_realn.bam 175052870 BAM chimeric harmonized CPTAC3 52e794ea-f43a-4b0f-9852-91873a884fb4 3218cb527ce52be136e5214f25077a85 { 'aliquot_tag': 'ALQ_910d52fe', 'gdc_sample_type': 'Primary Tumor' } +C3L-01925.RNA-Seq.genomic.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0113690006 a500a3d5-18d5-4587-b23c-660cc72d784f.rna_seq.genomic.gdc_realn.bam 8757986045 BAM genomic harmonized CPTAC3 f9ab070f-0beb-411c-ae08-fe5248d6561f 822a050770e6b7c5ba56c5c4c47e1e63 { 'aliquot_tag': 'ALQ_c0d475d4', 'gdc_sample_type': 'Primary Tumor' } +C3L-01925.RNA-Seq.genomic.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0336990001 ee570494-367c-4e2f-b015-d805bbd95b75.rna_seq.genomic.gdc_realn.bam 7956687894 BAM genomic harmonized CPTAC3 46706ee6-9035-4e09-adf8-4f883ccb4f70 8db5c47fe72c4604d81d3e7e238dc9c6 { 'aliquot_tag': 'ALQ_910d52fe', 'gdc_sample_type': 'Primary Tumor' } +C3L-01925.RNA-Seq.R1_L006.T C3L-01925 UCEC RNA-Seq tumor CPT0113690006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3863935837 FASTQ R1_L006 unaligned CPTAC3 49190371-ec2a-420f-a804-0931a346d206 945e2f9be6d5f170d69db929e6086bfd { 'aliquot_tag': 'ALQ_c0d475d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01925.RNA-Seq.R2_L006.T C3L-01925 UCEC RNA-Seq tumor CPT0113690006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTCAA_S23_L006_R2_001.fastq.gz 4262715660 FASTQ R2_L006 unaligned CPTAC3 c8dfbe14-a49c-4838-95c7-c9b9ed81633a fae4ed3c02b64640231cd03f7dcc312f { 'aliquot_tag': 'ALQ_c0d475d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01925.RNA-Seq.T C3L-01925 UCEC RNA-Seq tumor CPT0336990001 20210729_P3_F8_WB7988-Plate3_S68_R1_001.fastq.gz 4891982146 FASTQ unaligned CPTAC3 ab378c65-4d59-4ed0-82ac-73788de1353f db42dfa5823b255b8538d1734700e74b +C3L-01925.RNA-Seq.T C3L-01925 UCEC RNA-Seq tumor CPT0336990001 20210729_P3_F8_WB7988-Plate3_S68_R2_001.fastq.gz 5017968745 FASTQ unaligned CPTAC3 94266dde-525d-4c68-b8a1-366c98c8e111 ecfa7fa003e15f31c1345614075f2721 C3L-01925.RNA-Seq.transcriptome.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0113690006 a500a3d5-18d5-4587-b23c-660cc72d784f.rna_seq.transcriptome.gdc_realn.bam 9065647464 BAM transcriptome harmonized CPTAC3 c1410f03-1891-482d-a942-73e9d6e53e3e f200aabb4a82792cd87c01cf7a3b1262 { 'aliquot_tag': 'ALQ_c0d475d4', 'gdc_sample_type': 'Primary Tumor' } +C3L-01925.RNA-Seq.transcriptome.T.hg38 C3L-01925 UCEC RNA-Seq tumor CPT0336990001 ee570494-367c-4e2f-b015-d805bbd95b75.rna_seq.transcriptome.gdc_realn.bam 3997983105 BAM transcriptome harmonized CPTAC3 b251751e-165d-4af3-bcd9-73eb541c9846 da3d5c006eba49bc25c542591f1d909c { 'aliquot_tag': 'ALQ_910d52fe', 'gdc_sample_type': 'Primary Tumor' } C3L-01925.WGS.N C3L-01925 UCEC WGS blood_normal CPT0114410002 CPT0114410002.WholeGenome.RP-1303.bam 57704354295 BAM aligned CPTAC3 7a638708-ec54-448f-b793-18ff020a1f05 b242adf3001144e732d81e6c9abb5842 { 'aliquot_tag': 'ALQ_7fa66589', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01925.WGS.N.hg38 C3L-01925 UCEC WGS blood_normal CPT0114410002 d354fd4a-1f75-4174-b0c9-10575ed3a4d5_wgs_gdc_realn.bam 83787352428 BAM harmonized CPTAC3 580c3cce-5125-41fd-933b-52017d1279e0 2f0da2b71921150ac5863fc13419055b { 'aliquot_tag': 'ALQ_7fa66589', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01925.WGS.T C3L-01925 UCEC WGS tumor CPT0113690009 CPT0113690009.WholeGenome.RP-1303.bam 58877766330 BAM aligned CPTAC3 09eb163d-b367-4bee-8e85-fd7eb92e0af7 04bd955d6f46cd141d2acc2379d057c5 { 'aliquot_tag': 'ALQ_506b6845', 'gdc_sample_type': 'Primary Tumor' } @@ -8739,11 +9437,11 @@ C3L-01929.MethArray.Green.T C3L-01929 CCRCC Methylation Array tumor CPT009302000 C3L-01929.MethArray.Red.T C3L-01929 CCRCC Methylation Array tumor CPT0093020009 202234370086_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 14df697c-7230-4b7e-8218-e8882c66f20a 4790d209db2fe76110a5b913b1097c59 { 'aliquot_tag': 'ALQ_357cb5bf', 'gdc_sample_type': 'Primary Tumor' } C3L-01929.miRNA-Seq.T C3L-01929 CCRCC miRNA-Seq tumor CPT0093020006 180724_UNC32-K00270_0106_BHWK3MBBXX_TATAAT_S20_L007_R1_001.unaln.bam 300858536 BAM unaligned CPTAC3 a7003ec8-f78b-4d06-9397-98fa109cbb70 91e415e008abc0d6973402e007f7f8f8 { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor' } C3L-01929.miRNA-Seq.T.hg38 C3L-01929 CCRCC miRNA-Seq tumor CPT0093020006 b2e497fa-18f1-4e2c-921b-75347f8dc258_mirnaseq_gdc_realn.bam 321524603 BAM harmonized CPTAC3 7a434fbf-c7f8-490b-8f0f-db3c382d25c6 92c363478f93948a4705117718523d2c { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01929.RNA-Seq.chimeric.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 59e17617-73c7-4439-80c6-8d1d5231291b.rna_seq.chimeric.gdc_realn.bam 46899855 BAM chimeric harmonized CPTAC3 5cfd0b80-9a58-4c46-92aa-550018ac2b9a b654096b59a5b09d950fe4342608126d { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01929.RNA-Seq.genomic.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 59e17617-73c7-4439-80c6-8d1d5231291b.rna_seq.genomic.gdc_realn.bam 9092838317 BAM genomic harmonized CPTAC3 96bd9180-861b-4b9c-8fcd-96625f79a5f3 c955ba0c8dd3118d810baac835432a01 { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01929.RNA-Seq.R1_L003.T C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 171129_UNC32-K00270_0066_AHM25VBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 4262434556 FASTQ R1_L003 unaligned CPTAC3 425cb3c9-c46d-4679-bffd-1112c63e7d35 401009e81efe18e0db8070c3e81d7274 { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01929.RNA-Seq.R2_L003.T C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 171129_UNC32-K00270_0066_AHM25VBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 4752782066 FASTQ R2_L003 unaligned CPTAC3 0d41aaec-d8a2-48d3-983f-58be18dc53dd fc175ae6f60314b52a289bdf8f4cc2f7 { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01929.RNA-Seq.transcriptome.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 59e17617-73c7-4439-80c6-8d1d5231291b.rna_seq.transcriptome.gdc_realn.bam 10552996449 BAM transcriptome harmonized CPTAC3 fc2859d2-43cb-4110-9055-b5fb7109b79a c1bcab376b054027ed7bb96856aeba06 { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01929.RNA-Seq.chimeric.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 2fc7f327-e498-4857-ab29-1849fe15c00d.rna_seq.chimeric.gdc_realn.bam 46870592 BAM chimeric harmonized CPTAC3 a11ee217-73fb-4ce6-a5e6-012b38ab6bb7 5a900bd9674c8b2d0b4d377ec83f1631 { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01929.RNA-Seq.genomic.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 2fc7f327-e498-4857-ab29-1849fe15c00d.rna_seq.genomic.gdc_realn.bam 9094283421 BAM genomic harmonized CPTAC3 236e4d69-c52a-423f-94ac-ee2178131c8a a88c4ed2c6bae61319076b98c15dca84 { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01929.RNA-Seq.R1_L003.T C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 171129_UNC32-K00270_0066_AHM25VBBXX_GTTTCG_S12_L003_R1_001.fastq.gz 4262434556 FASTQ R1_L003 unaligned CPTAC3 425cb3c9-c46d-4679-bffd-1112c63e7d35 401009e81efe18e0db8070c3e81d7274 { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01929.RNA-Seq.R2_L003.T C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 171129_UNC32-K00270_0066_AHM25VBBXX_GTTTCG_S12_L003_R2_001.fastq.gz 4752782066 FASTQ R2_L003 unaligned CPTAC3 0d41aaec-d8a2-48d3-983f-58be18dc53dd fc175ae6f60314b52a289bdf8f4cc2f7 { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01929.RNA-Seq.transcriptome.T.hg38 C3L-01929 CCRCC RNA-Seq tumor CPT0093020006 2fc7f327-e498-4857-ab29-1849fe15c00d.rna_seq.transcriptome.gdc_realn.bam 11962873368 BAM transcriptome harmonized CPTAC3 c51a6746-7683-4f3d-8f5f-55c599ae0379 941b1d84becbb2e78a2d4cd7157f67a6 { 'aliquot_tag': 'ALQ_a5c3a82e', 'gdc_sample_type': 'Primary Tumor' } C3L-01929.WGS.N C3L-01929 CCRCC WGS blood_normal CPT0092450002 CPT0092450002.WholeGenome.RP-1303.bam 67886167849 BAM aligned CPTAC3 d4c45b6e-1006-4ed0-b075-c3585b19c960 529cf52992b28f4c0d7a2f390c279d18 { 'aliquot_tag': 'ALQ_2d68f985', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01929.WGS.N.hg38 C3L-01929 CCRCC WGS blood_normal CPT0092450002 ca6848da-0250-4723-987d-9c5ecd76b3dd_wgs_gdc_realn.bam 99318565296 BAM harmonized CPTAC3 9454f0db-f2e5-4396-82a5-18e8e6e37aa1 067d89a67018ddf5888ff6eebec325a7 { 'aliquot_tag': 'ALQ_2d68f985', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01929.WGS.T C3L-01929 CCRCC WGS tumor CPT0093020009 CPT0093020009.WholeGenome.RP-1303.bam 67894329757 BAM aligned CPTAC3 0100d080-7b6c-4c76-8738-b3e7e3c11956 adff5524f377abe32e484b7927823b0b { 'aliquot_tag': 'ALQ_357cb5bf', 'gdc_sample_type': 'Primary Tumor' } @@ -8756,11 +9454,11 @@ C3L-01951.MethArray.Green.T C3L-01951 CCRCC Methylation Array tumor CPT009268000 C3L-01951.MethArray.Red.T C3L-01951 CCRCC Methylation Array tumor CPT0092680009 202234380051_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 0a87bfde-b667-4aef-a18a-a58d1a849707 c4f6e8d09c00f5f4bb528efbed42cd6d { 'aliquot_tag': 'ALQ_fe245b7', 'gdc_sample_type': 'Primary Tumor' } C3L-01951.miRNA-Seq.T C3L-01951 CCRCC miRNA-Seq tumor CPT0092680006 180724_UNC32-K00270_0106_BHWK3MBBXX_TACAGC_S19_L007_R1_001.unaln.bam 240017858 BAM unaligned CPTAC3 666291bb-adce-4738-91c7-b82ee7ebc250 cdd723918ef410b868fd85a01c55e1cb { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor' } C3L-01951.miRNA-Seq.T.hg38 C3L-01951 CCRCC miRNA-Seq tumor CPT0092680006 7959928f-94f4-4777-9047-b79b60fa5c31_mirnaseq_gdc_realn.bam 264062183 BAM harmonized CPTAC3 5151591e-c4b2-4ba4-b4d4-c24a18eb1449 2dc89b79272966bb857be7936be2c003 { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor' } -C3L-01951.RNA-Seq.chimeric.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 d314fd7b-1bb7-4cdc-b466-4f6fe7888b97.rna_seq.chimeric.gdc_realn.bam 53684283 BAM chimeric harmonized CPTAC3 976e706e-c32e-4e68-872a-dee9bb9be124 db59adea6c15c68728b307c0d7cc402e { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor' } -C3L-01951.RNA-Seq.genomic.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 d314fd7b-1bb7-4cdc-b466-4f6fe7888b97.rna_seq.genomic.gdc_realn.bam 9931878362 BAM genomic harmonized CPTAC3 1322ccb8-2882-4250-8cee-7d8ebb4be6a0 353aee9b26abc0f024580f007b5210e3 { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor' } -C3L-01951.RNA-Seq.R1_L003.T C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 4841246897 FASTQ R1_L003 unaligned CPTAC3 abfe4735-2c06-4aae-bde6-b1e11bfdcb76 a15e34a299d1eb9754c938544df0e2c4 { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor' } -C3L-01951.RNA-Seq.R2_L003.T C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 5357433664 FASTQ R2_L003 unaligned CPTAC3 8b135a11-9e76-4ae6-bc74-6709f1a08a78 1cf931f2b869eaddf85323a8b91dfbe1 { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor' } -C3L-01951.RNA-Seq.transcriptome.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 d314fd7b-1bb7-4cdc-b466-4f6fe7888b97.rna_seq.transcriptome.gdc_realn.bam 10547186992 BAM transcriptome harmonized CPTAC3 5ef35d28-c132-4a73-8524-38d6556469a1 2011c78c948f7ce83dae815d0712daa4 { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor' } +C3L-01951.RNA-Seq.chimeric.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 53e188de-369c-4f71-8657-1c96dc9a62e8.rna_seq.chimeric.gdc_realn.bam 53657126 BAM chimeric harmonized CPTAC3 20cfd6ad-e0df-4ac7-bdb1-fe732ad938f3 42e741bd0666c200c8829367c08d43d4 { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor' } +C3L-01951.RNA-Seq.genomic.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 53e188de-369c-4f71-8657-1c96dc9a62e8.rna_seq.genomic.gdc_realn.bam 9932412366 BAM genomic harmonized CPTAC3 a8fd2ef9-68b7-4d6f-bded-8dc75f77d1eb 93019ce09ea3315f8c1d8ee83bd3fc33 { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor' } +C3L-01951.RNA-Seq.R1_L003.T C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGGCC_S10_L003_R1_001.fastq.gz 4841246897 FASTQ R1_L003 unaligned CPTAC3 abfe4735-2c06-4aae-bde6-b1e11bfdcb76 a15e34a299d1eb9754c938544df0e2c4 { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01951.RNA-Seq.R2_L003.T C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 171129_UNC32-K00270_0066_AHM25VBBXX_GTGGCC_S10_L003_R2_001.fastq.gz 5357433664 FASTQ R2_L003 unaligned CPTAC3 8b135a11-9e76-4ae6-bc74-6709f1a08a78 1cf931f2b869eaddf85323a8b91dfbe1 { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01951.RNA-Seq.transcriptome.T.hg38 C3L-01951 CCRCC RNA-Seq tumor CPT0092680006 53e188de-369c-4f71-8657-1c96dc9a62e8.rna_seq.transcriptome.gdc_realn.bam 11966698842 BAM transcriptome harmonized CPTAC3 1855acac-a809-437d-a8a0-12a9e60b28b9 245382c8fed70d285eebd8a6d5606c29 { 'aliquot_tag': 'ALQ_9f5d5826', 'gdc_sample_type': 'Primary Tumor' } C3L-01951.WGS.N C3L-01951 CCRCC WGS blood_normal CPT0092080002 CPT0092080002.WholeGenome.RP-1303.bam 60990182128 BAM aligned CPTAC3 9711e3ee-860b-4047-85ee-8f78aa9cb392 068beb58a53c68f3ebc1d330de070b6b { 'aliquot_tag': 'ALQ_4e697f22', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01951.WGS.N.hg38 C3L-01951 CCRCC WGS blood_normal CPT0092080002 8a1463a4-c097-44d5-90f9-12a9de165331_wgs_gdc_realn.bam 89111027479 BAM harmonized CPTAC3 8be84ec2-69b2-4790-b39b-c12bd66be181 4f27f0452e91c2c7caf537e503970b0a { 'aliquot_tag': 'ALQ_4e697f22', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01951.WGS.T C3L-01951 CCRCC WGS tumor CPT0092680009 CPT0092680009.WholeGenome.RP-1303.bam 62525625914 BAM aligned CPTAC3 d57e7fcf-16e8-41ac-a089-367c886db14c 7c50b3f6de02260a093bbd68756ea9a3 { 'aliquot_tag': 'ALQ_fe245b7', 'gdc_sample_type': 'Primary Tumor' } @@ -8773,11 +9471,11 @@ C3L-01952.MethArray.Green.T C3L-01952 CCRCC Methylation Array tumor CPT009307000 C3L-01952.MethArray.Red.T C3L-01952 CCRCC Methylation Array tumor CPT0093070009 202234380054_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 3e40f216-e93e-4ea2-8548-7cba6396d781 84e9ff23a82cfbad98cbbec428b75ce4 { 'aliquot_tag': 'ALQ_fd9c3acf', 'gdc_sample_type': 'Primary Tumor' } C3L-01952.miRNA-Seq.T C3L-01952 CCRCC miRNA-Seq tumor CPT0093070006 181113_UNC31-K00269_0164_AH23NNBBXY_CTAGCT_S14_L003_R1_001.unaln.bam 197421541 BAM unaligned CPTAC3 4d364adb-11d1-4aaa-864d-000bb20b57a4 80c2d14cf4d5bbc00a7f31815c7c011a { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor' } C3L-01952.miRNA-Seq.T.hg38 C3L-01952 CCRCC miRNA-Seq tumor CPT0093070006 6f623f89-6cfd-45f4-9e4c-228af8eaa4d3_mirnaseq_gdc_realn.bam 222580225 BAM harmonized CPTAC3 b5bc07b2-2d4e-4576-9972-3ebb62fd592a 717db379792924137241674429852d55 { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01952.RNA-Seq.chimeric.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 da77afaa-c90e-4409-912a-bb868eb79512.rna_seq.chimeric.gdc_realn.bam 57328839 BAM chimeric harmonized CPTAC3 8d1a0776-1627-462e-82d9-2f7736afbd35 b9c82dd523df440420aa8f38cdeb55af { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01952.RNA-Seq.genomic.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 da77afaa-c90e-4409-912a-bb868eb79512.rna_seq.genomic.gdc_realn.bam 9943712842 BAM genomic harmonized CPTAC3 7c0081f3-65ec-47bb-8d0f-fc8203801657 2b49ba077c761da86baa4d10ab33b3a5 { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01952.RNA-Seq.R1_L006.T C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L006_R1_001.fastq.gz 4909231779 FASTQ R1_L006 unaligned CPTAC3 5ef0270e-595b-4181-94d2-c72989ab949b 2434d48463804ed70bd60d478779de65 { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01952.RNA-Seq.R2_L006.T C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L006_R2_001.fastq.gz 5276145027 FASTQ R2_L006 unaligned CPTAC3 849811f6-e2aa-4a1d-9965-f3e31f03ee6a a9ed5ff43bb228dab1d75f4220818d05 { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor' } -C3L-01952.RNA-Seq.transcriptome.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 da77afaa-c90e-4409-912a-bb868eb79512.rna_seq.transcriptome.gdc_realn.bam 11195727080 BAM transcriptome harmonized CPTAC3 a90b845f-8c83-4c55-886e-c349dc5243d3 6a958d9b417f2f99e91e97f286f37a50 { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01952.RNA-Seq.chimeric.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 70b3ad60-3b09-4e4c-adda-c5ad2c0807d7.rna_seq.chimeric.gdc_realn.bam 57314023 BAM chimeric harmonized CPTAC3 226a01ae-c415-47cc-9dd5-49e125592e6d 3700ec2f8f90804867abf6e06555aac1 { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01952.RNA-Seq.genomic.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 70b3ad60-3b09-4e4c-adda-c5ad2c0807d7.rna_seq.genomic.gdc_realn.bam 9945047073 BAM genomic harmonized CPTAC3 43cef7f6-da31-432f-9bb3-d5a2e44b906d 4fd99a8f04c9782883ed300d95df0bc3 { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor' } +C3L-01952.RNA-Seq.R1_L006.T C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L006_R1_001.fastq.gz 4909231779 FASTQ R1_L006 unaligned CPTAC3 5ef0270e-595b-4181-94d2-c72989ab949b 2434d48463804ed70bd60d478779de65 { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01952.RNA-Seq.R2_L006.T C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L006_R2_001.fastq.gz 5276145027 FASTQ R2_L006 unaligned CPTAC3 849811f6-e2aa-4a1d-9965-f3e31f03ee6a a9ed5ff43bb228dab1d75f4220818d05 { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01952.RNA-Seq.transcriptome.T.hg38 C3L-01952 CCRCC RNA-Seq tumor CPT0093070006 70b3ad60-3b09-4e4c-adda-c5ad2c0807d7.rna_seq.transcriptome.gdc_realn.bam 12766365814 BAM transcriptome harmonized CPTAC3 d4198276-1145-41b6-a3e7-bf22c730ce36 5c388b3b4be4b0da2b971556db7052de { 'aliquot_tag': 'ALQ_6d23275e', 'gdc_sample_type': 'Primary Tumor' } C3L-01952.WGS.N C3L-01952 CCRCC WGS blood_normal CPT0092580002 CPT0092580002.WholeGenome.RP-1303.bam 57783014868 BAM aligned CPTAC3 ec0377f4-5eb5-46b9-a2aa-385d5b40fd0e 5523a2529ad14620fe3f30a46efdce37 { 'aliquot_tag': 'ALQ_1ea4ee91', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01952.WGS.N.hg38 C3L-01952 CCRCC WGS blood_normal CPT0092580002 1f0715e3-3fde-4e61-b248-4c7dcb86886d_wgs_gdc_realn.bam 86444512659 BAM harmonized CPTAC3 bcd8f8b3-ee1f-4cf9-88d7-090b2f390918 9f9ae4bc92eee80e6680a47bd03ed1cf { 'aliquot_tag': 'ALQ_1ea4ee91', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01952.WGS.T C3L-01952 CCRCC WGS tumor CPT0093070009 CPT0093070009.WholeGenome.RP-1303.bam 59887820196 BAM aligned CPTAC3 5f7f0673-6e13-48f4-b044-e80b7247c12b afc3d2cacf17cfe625bf32c3905966a4 { 'aliquot_tag': 'ALQ_fd9c3acf', 'gdc_sample_type': 'Primary Tumor' } @@ -8790,11 +9488,11 @@ C3L-01953.MethArray.Green.T C3L-01953 CCRCC Methylation Array tumor CPT038986000 C3L-01953.MethArray.Red.T C3L-01953 CCRCC Methylation Array tumor CPT0389860006 205555380161_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 da5a0e20-9508-4c2c-a7b1-c48051d91cfa 6f26a4b030db2b47564ba2bbfe97df70 { 'aliquot_tag': 'ALQ_ed47ef96', 'gdc_sample_type': 'Primary Tumor' } C3L-01953.miRNA-Seq.T C3L-01953 CCRCC miRNA-Seq tumor CPT0389860009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CAGGCG_S23_L002_R1_001.unaln.bam 256144230 BAM unaligned CPTAC3 f792aa6c-6350-4ec2-89b6-2502b2a307d5 485450dd3ee89c1661575ff34bdf6953 { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor' } C3L-01953.miRNA-Seq.T.hg38 C3L-01953 CCRCC miRNA-Seq tumor CPT0389860009 60364281-c8a1-4ea1-9fa0-d0b864c35ab2_mirnaseq_gdc_realn.bam 283007837 BAM harmonized CPTAC3 0c378294-0b05-4ecc-a186-8a560ca5e0e0 b8290527af5def33baffdcafafe4fe0c { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor' } -C3L-01953.RNA-Seq.chimeric.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 060b2e28-932b-4442-bf66-8b452671bd28.rna_seq.chimeric.gdc_realn.bam 304431529 BAM chimeric harmonized CPTAC3 e053d3de-20e2-4f97-9aed-bce42a049267 769ebb14858c955f79c9a0d0e9750022 { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor' } -C3L-01953.RNA-Seq.genomic.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 060b2e28-932b-4442-bf66-8b452671bd28.rna_seq.genomic.gdc_realn.bam 8734407513 BAM genomic harmonized CPTAC3 6cca1cbd-11d2-4b67-80b9-914705d0682a ed071595c136ce6a0a580d8f9c7e31b1 { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor' } -C3L-01953.RNA-Seq.R1_L001.T C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 210105_UNC32-K00270_0269_BHKN5MBBXY_TACCGAGG-CCTGAACT_S4_L001_R1_001.fastq.gz 4046894466 FASTQ R1_L001 unaligned CPTAC3 c6c161f7-0723-4a50-ae25-7fd30c277842 19e9f466177c3efc508f7f87c2984892 { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor' } -C3L-01953.RNA-Seq.R2_L001.T C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 210105_UNC32-K00270_0269_BHKN5MBBXY_TACCGAGG-CCTGAACT_S4_L001_R2_001.fastq.gz 4687825641 FASTQ R2_L001 unaligned CPTAC3 df994857-d183-4299-8120-f79f0f49d65b 41ee0b0038c1bee5dae4785153c7880a { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor' } -C3L-01953.RNA-Seq.transcriptome.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 060b2e28-932b-4442-bf66-8b452671bd28.rna_seq.transcriptome.gdc_realn.bam 10779667901 BAM transcriptome harmonized CPTAC3 90cd6458-85ea-4f7f-9378-f532610433c1 c609033757184211f3c48eac872fcb4d { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor' } +C3L-01953.RNA-Seq.chimeric.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 40a2854d-cfda-4ee5-bc4f-4f9dc3759267.rna_seq.chimeric.gdc_realn.bam 304469429 BAM chimeric harmonized CPTAC3 2ea7da44-eff0-49c0-b16f-329c2402a394 3930ac3d0e347697027a445434052105 { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor' } +C3L-01953.RNA-Seq.genomic.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 40a2854d-cfda-4ee5-bc4f-4f9dc3759267.rna_seq.genomic.gdc_realn.bam 8744668672 BAM genomic harmonized CPTAC3 33b2846b-8899-4abc-b8f3-b5e5d46a40b7 737837aee72e92b8b38d5c340d5284b6 { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor' } +C3L-01953.RNA-Seq.R1_L001.T C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 210105_UNC32-K00270_0269_BHKN5MBBXY_TACCGAGG-CCTGAACT_S4_L001_R1_001.fastq.gz 4046894466 FASTQ R1_L001 unaligned CPTAC3 c6c161f7-0723-4a50-ae25-7fd30c277842 19e9f466177c3efc508f7f87c2984892 { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01953.RNA-Seq.R2_L001.T C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 210105_UNC32-K00270_0269_BHKN5MBBXY_TACCGAGG-CCTGAACT_S4_L001_R2_001.fastq.gz 4687825641 FASTQ R2_L001 unaligned CPTAC3 df994857-d183-4299-8120-f79f0f49d65b 41ee0b0038c1bee5dae4785153c7880a { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01953.RNA-Seq.transcriptome.T.hg38 C3L-01953 CCRCC RNA-Seq tumor CPT0389860009 40a2854d-cfda-4ee5-bc4f-4f9dc3759267.rna_seq.transcriptome.gdc_realn.bam 12282526354 BAM transcriptome harmonized CPTAC3 37f421a0-a5c1-465d-ad1a-faab75e940d3 df705c33a8314e024578b3050d9969ef { 'aliquot_tag': 'ALQ_7df8f207', 'gdc_sample_type': 'Primary Tumor' } C3L-01953.WGS.N C3L-01953 CCRCC WGS blood_normal CPT0389890002 CPT0389890002.WholeGenome.RP-2158.bam 24317435491 BAM aligned CPTAC3 55eab932-5116-4113-b926-0efad3c05d3b 02d455349dc8c7aeb14ef8aee8f7413d { 'aliquot_tag': 'ALQ_687abc5e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01953.WGS.N.hg38 C3L-01953 CCRCC WGS blood_normal CPT0389890002 3cb5aaf6-03d9-4719-abde-4112902ed551_wgs_gdc_realn.bam 74701967279 BAM harmonized CPTAC3 4911fc07-7453-4114-9e31-8f1dbd44e011 692eb62bade20d5934b5c85e61a1a5ee { 'aliquot_tag': 'ALQ_687abc5e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01953.WGS.T C3L-01953 CCRCC WGS tumor CPT0389860006 CPT0389860006.WholeGenome.RP-2158.bam 26360311209 BAM aligned CPTAC3 4498028a-bc11-4d4b-8946-2dae351f9681 39e9a204114370658c170d2030cb6e23 { 'aliquot_tag': 'ALQ_ed47ef96', 'gdc_sample_type': 'Primary Tumor' } @@ -8807,11 +9505,11 @@ C3L-01954.MethArray.Green.T C3L-01954 CCRCC Methylation Array tumor CPT010059000 C3L-01954.MethArray.Red.T C3L-01954 CCRCC Methylation Array tumor CPT0100590009 202234380094_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 fd3081ef-f85f-4a0b-a041-41beb60988c5 1543d9abb8f4bbcfecf7fff604880d88 { 'aliquot_tag': 'ALQ_2bbd00e8', 'gdc_sample_type': 'Primary Tumor' } C3L-01954.miRNA-Seq.T C3L-01954 CCRCC miRNA-Seq tumor CPT0100590006 180828_UNC32-K00270_0112_AHWTLNBBXX_CGTACG_S14_L006_R1_001.unaln.bam 200639592 BAM unaligned CPTAC3 3aa306ca-80e6-46f7-b94d-d857144bc047 cb5b65338452b878eece8db4f16b7e13 { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor' } C3L-01954.miRNA-Seq.T.hg38 C3L-01954 CCRCC miRNA-Seq tumor CPT0100590006 5cbfd8b9-a462-4b06-b992-aa1e6e06d1b4_mirnaseq_gdc_realn.bam 228179884 BAM harmonized CPTAC3 301c14bb-2d45-429d-bb93-c0780171e3e8 55fd44f4bf696bc38a04257f07b35b9b { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor' } -C3L-01954.RNA-Seq.chimeric.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 ba8fe1a2-5948-422d-9b92-7e78b2ca009e.rna_seq.chimeric.gdc_realn.bam 41256208 BAM chimeric harmonized CPTAC3 cfec800b-6eab-436a-9aa0-f9bcd31fc8b6 34ca2c569d87c3244281a9006a3e9b5d { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor' } -C3L-01954.RNA-Seq.genomic.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 ba8fe1a2-5948-422d-9b92-7e78b2ca009e.rna_seq.genomic.gdc_realn.bam 9638669449 BAM genomic harmonized CPTAC3 f07fd8ad-e86d-4eec-ae48-b3616fa0a193 108b2d667a951c12f977040c593cc048 { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor' } -C3L-01954.RNA-Seq.R1_L005.T C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 171129_UNC32-K00270_0067_BHN2N5BBXX_GAGTGG_S17_L005_R1_001.fastq.gz 4305539235 FASTQ R1_L005 unaligned CPTAC3 a075910a-daa2-4e5c-b542-062ee3c4eb3e cb66ad943636d2f4cc3facea5c13a7f3 { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor' } -C3L-01954.RNA-Seq.R2_L005.T C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 171129_UNC32-K00270_0067_BHN2N5BBXX_GAGTGG_S17_L005_R2_001.fastq.gz 4731489217 FASTQ R2_L005 unaligned CPTAC3 1b07305e-9e61-48dc-bca3-bb14bda008b4 5b4c9f23f031a93f4db5daf8302ae062 { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor' } -C3L-01954.RNA-Seq.transcriptome.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 ba8fe1a2-5948-422d-9b92-7e78b2ca009e.rna_seq.transcriptome.gdc_realn.bam 9848148731 BAM transcriptome harmonized CPTAC3 1c667472-a9c5-48f2-bd68-970ef4a43913 a4b534469852b3e093d74fc779faefbe { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor' } +C3L-01954.RNA-Seq.chimeric.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 f09c265a-f12c-4504-a39a-9da2bd26107a.rna_seq.chimeric.gdc_realn.bam 41246956 BAM chimeric harmonized CPTAC3 052933d7-49c0-47a2-9624-fa65e5f45692 0c458f42fa963c7c8bbb9f18ae58098f { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor' } +C3L-01954.RNA-Seq.genomic.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 f09c265a-f12c-4504-a39a-9da2bd26107a.rna_seq.genomic.gdc_realn.bam 9639771665 BAM genomic harmonized CPTAC3 180be7f0-49e5-4a4f-8b9b-257a326ddf58 9d89fa401f43162ec143661fca01933f { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor' } +C3L-01954.RNA-Seq.R1_L005.T C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 171129_UNC32-K00270_0067_BHN2N5BBXX_GAGTGG_S17_L005_R1_001.fastq.gz 4305539235 FASTQ R1_L005 unaligned CPTAC3 a075910a-daa2-4e5c-b542-062ee3c4eb3e cb66ad943636d2f4cc3facea5c13a7f3 { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01954.RNA-Seq.R2_L005.T C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 171129_UNC32-K00270_0067_BHN2N5BBXX_GAGTGG_S17_L005_R2_001.fastq.gz 4731489217 FASTQ R2_L005 unaligned CPTAC3 1b07305e-9e61-48dc-bca3-bb14bda008b4 5b4c9f23f031a93f4db5daf8302ae062 { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01954.RNA-Seq.transcriptome.T.hg38 C3L-01954 CCRCC RNA-Seq tumor CPT0100590006 f09c265a-f12c-4504-a39a-9da2bd26107a.rna_seq.transcriptome.gdc_realn.bam 11182131610 BAM transcriptome harmonized CPTAC3 a15fe031-54c3-43dd-b8be-5e735092a246 d2a5e4b017e48cbb0d5ce08715f66e55 { 'aliquot_tag': 'ALQ_bb021d79', 'gdc_sample_type': 'Primary Tumor' } C3L-01954.WGS.N C3L-01954 CCRCC WGS blood_normal CPT0101990002 CPT0101990002.WholeGenome.RP-1303.bam 59783206052 BAM aligned CPTAC3 21f6b6db-086f-4084-8f81-b190aa6fec25 3ea138fe035c58891592c3f007c2194a { 'aliquot_tag': 'ALQ_6dda12af', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01954.WGS.N.hg38 C3L-01954 CCRCC WGS blood_normal CPT0101990002 70e1b9a5-a805-4e1b-920b-f770dbfa406f_wgs_gdc_realn.bam 88173375107 BAM harmonized CPTAC3 c8c18a96-89ad-4f46-924c-ef352ed45dbc 3316530c8a6e57dcf32c674a134e17f2 { 'aliquot_tag': 'ALQ_6dda12af', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01954.WGS.T C3L-01954 CCRCC WGS tumor CPT0100590009 CPT0100590009.WholeGenome.RP-1303.bam 60629016496 BAM aligned CPTAC3 3003724c-137d-4762-b7dd-5e0cd39956c7 eda81227978ebcab8e43abfef85e0111 { 'aliquot_tag': 'ALQ_2bbd00e8', 'gdc_sample_type': 'Primary Tumor' } @@ -8826,16 +9524,16 @@ C3L-01955.miRNA-Seq.A C3L-01955 CCRCC miRNA-Seq tissue_normal CPT0389790006 2101 C3L-01955.miRNA-Seq.A.hg38 C3L-01955 CCRCC miRNA-Seq tissue_normal CPT0389790006 69120396-3160-4423-a01e-78816e1e54c6_mirnaseq_gdc_realn.bam 260186350 BAM harmonized CPTAC3 c80e2aff-16a5-4317-8888-14119d244303 2bee806e989fc7f31d9e587f4f6779ba { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01955.miRNA-Seq.T C3L-01955 CCRCC miRNA-Seq tumor CPT0389780009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CACGAT_S21_L002_R1_001.unaln.bam 350267548 BAM unaligned CPTAC3 91fa9483-6b94-440c-b359-d1b9fff67fb0 e11276d538f55fe0b7671d0bf15ea6c5 { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor' } C3L-01955.miRNA-Seq.T.hg38 C3L-01955 CCRCC miRNA-Seq tumor CPT0389780009 2c4adf73-52b1-49e4-85bf-bb5dd4fe926e_mirnaseq_gdc_realn.bam 368055796 BAM harmonized CPTAC3 71285416-c4d2-4391-ad03-cf18bbf14633 6839e1c865705b787c71021f8d1f67bf { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01955.RNA-Seq.chimeric.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b9380c7e-3d7e-4b47-a144-ef721287e736.rna_seq.chimeric.gdc_realn.bam 360689685 BAM chimeric harmonized CPTAC3 194af9e5-8012-4386-a4c5-bf5fa90cf79f 8d786f345ef2095dc0de307d1b321ce8 { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01955.RNA-Seq.chimeric.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 d1b9d84c-fb04-4575-84ec-29510fe042b8.rna_seq.chimeric.gdc_realn.bam 316050338 BAM chimeric harmonized CPTAC3 8bf974f8-0dd9-4b1d-b1d9-f02855aa0a15 0f52c552fa1b0db730bfdd3bf3985b29 { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01955.RNA-Seq.genomic.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b9380c7e-3d7e-4b47-a144-ef721287e736.rna_seq.genomic.gdc_realn.bam 9388193948 BAM genomic harmonized CPTAC3 301b1c54-5836-486d-a7a1-8086622d2718 568f8c790ee206446e75a467049a93d3 { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01955.RNA-Seq.genomic.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 d1b9d84c-fb04-4575-84ec-29510fe042b8.rna_seq.genomic.gdc_realn.bam 7701570254 BAM genomic harmonized CPTAC3 ec68f6b5-7ede-4894-8879-bebe6dbf0c40 975474fc5dec38fb25e547b24732119e { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01955.RNA-Seq.R1_L002.A C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATGCCTC-TCGATCCA_S5_L002_R1_001.fastq.gz 4386644868 FASTQ R1_L002 unaligned CPTAC3 f0027f05-021f-4d6d-9cd9-cab0b7c749be 11054fbb78120adcc2d406a63dd4a1a5 { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01955.RNA-Seq.R1_L002.T C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCATTCT-CTAGCTTG_S7_L002_R1_001.fastq.gz 3596194595 FASTQ R1_L002 unaligned CPTAC3 7bc34a21-c808-4b08-a241-bb54f02949e7 4e60c5b554a7bec630e8e9b8ac9ea062 { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01955.RNA-Seq.R2_L002.A C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATGCCTC-TCGATCCA_S5_L002_R2_001.fastq.gz 4865849887 FASTQ R2_L002 unaligned CPTAC3 002dd006-1655-4802-9903-4b3ac4867ab7 de18cf0dc168d671ae30253c8ef02642 { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01955.RNA-Seq.R2_L002.T C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCATTCT-CTAGCTTG_S7_L002_R2_001.fastq.gz 3970339191 FASTQ R2_L002 unaligned CPTAC3 46af4790-fdce-4e91-bce0-b64ff7e6adcb 7854b11c933fa83c98dca9b821e398af { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor' } -C3L-01955.RNA-Seq.transcriptome.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b9380c7e-3d7e-4b47-a144-ef721287e736.rna_seq.transcriptome.gdc_realn.bam 9132980705 BAM transcriptome harmonized CPTAC3 ec508ee2-c412-4a87-9714-a3a994cdbeec dedd6cd36966932266db12eea1fa7875 { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01955.RNA-Seq.transcriptome.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 d1b9d84c-fb04-4575-84ec-29510fe042b8.rna_seq.transcriptome.gdc_realn.bam 7392293607 BAM transcriptome harmonized CPTAC3 5a0f8ddd-b7f4-4f7f-abe1-8215b30b2fe5 7283fd8e26c432061a47c72e6d32ae66 { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor' } +C3L-01955.RNA-Seq.chimeric.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b39764dc-566d-44bb-aec8-235cfc239dd6.rna_seq.chimeric.gdc_realn.bam 360701574 BAM chimeric harmonized CPTAC3 4d478c73-6512-49b3-bf4a-e7262b723d96 a01a2d77fc2428574f8f347e0363a3d9 { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01955.RNA-Seq.chimeric.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 4162daab-bde4-4f96-8d70-40ad3653d440.rna_seq.chimeric.gdc_realn.bam 316056498 BAM chimeric harmonized CPTAC3 9535c628-859c-4dbc-a73e-c4adfd57917c a8e90349718af9e85d953873606c44c4 { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor' } +C3L-01955.RNA-Seq.genomic.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b39764dc-566d-44bb-aec8-235cfc239dd6.rna_seq.genomic.gdc_realn.bam 9395468569 BAM genomic harmonized CPTAC3 0bff5c0b-6db6-4c40-9ce7-1824bbc39bda c4750c2b4de32359aea30c2d64b8284b { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01955.RNA-Seq.genomic.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 4162daab-bde4-4f96-8d70-40ad3653d440.rna_seq.genomic.gdc_realn.bam 7708085510 BAM genomic harmonized CPTAC3 9f7624ac-3af5-424d-818f-911a2f252807 2606b1fee1796e2a36a7f4b72ec4dfcb { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor' } +C3L-01955.RNA-Seq.R1_L002.A C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATGCCTC-TCGATCCA_S5_L002_R1_001.fastq.gz 4386644868 FASTQ R1_L002 unaligned CPTAC3 f0027f05-021f-4d6d-9cd9-cab0b7c749be 11054fbb78120adcc2d406a63dd4a1a5 { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01955.RNA-Seq.R1_L002.T C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCATTCT-CTAGCTTG_S7_L002_R1_001.fastq.gz 3596194595 FASTQ R1_L002 unaligned CPTAC3 7bc34a21-c808-4b08-a241-bb54f02949e7 4e60c5b554a7bec630e8e9b8ac9ea062 { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01955.RNA-Seq.R2_L002.A C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATGCCTC-TCGATCCA_S5_L002_R2_001.fastq.gz 4865849887 FASTQ R2_L002 unaligned CPTAC3 002dd006-1655-4802-9903-4b3ac4867ab7 de18cf0dc168d671ae30253c8ef02642 { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01955.RNA-Seq.R2_L002.T C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCATTCT-CTAGCTTG_S7_L002_R2_001.fastq.gz 3970339191 FASTQ R2_L002 unaligned CPTAC3 46af4790-fdce-4e91-bce0-b64ff7e6adcb 7854b11c933fa83c98dca9b821e398af { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01955.RNA-Seq.transcriptome.A.hg38 C3L-01955 CCRCC RNA-Seq tissue_normal CPT0389790006 b39764dc-566d-44bb-aec8-235cfc239dd6.rna_seq.transcriptome.gdc_realn.bam 10437159748 BAM transcriptome harmonized CPTAC3 23238661-c52b-4498-8af6-97c073cfa000 079834374717d6a59b179dc4083ae35d { 'aliquot_tag': 'ALQ_9e41ca92', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01955.RNA-Seq.transcriptome.T.hg38 C3L-01955 CCRCC RNA-Seq tumor CPT0389780009 4162daab-bde4-4f96-8d70-40ad3653d440.rna_seq.transcriptome.gdc_realn.bam 8441188424 BAM transcriptome harmonized CPTAC3 088076ea-9de3-4458-9e98-940f0c38bde7 9249d29464c24df62de81e307b6d9dd2 { 'aliquot_tag': 'ALQ_339efeb3', 'gdc_sample_type': 'Primary Tumor' } C3L-01955.WGS.N C3L-01955 CCRCC WGS blood_normal CPT0389840002 CPT0389840002.WholeGenome.RP-2158.bam 28916531149 BAM aligned CPTAC3 e624d77b-e026-44ce-8b5b-d8358b47f666 cd56cb98a860eff28ddf503d9aa0f981 { 'aliquot_tag': 'ALQ_90ea78ef', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01955.WGS.N.hg38 C3L-01955 CCRCC WGS blood_normal CPT0389840002 09ce9065-3d14-4688-8f2e-578363c79726_wgs_gdc_realn.bam 87155275545 BAM harmonized CPTAC3 cd1599ab-6829-4e95-aee2-e90f1ac79260 a0844ae9ac64db75dc59d027b8b54312 { 'aliquot_tag': 'ALQ_90ea78ef', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01955.WGS.T C3L-01955 CCRCC WGS tumor CPT0389780006 CPT0389780006.WholeGenome.RP-2158.bam 25254646585 BAM aligned CPTAC3 c6d71be3-07fd-480d-8d4e-f22986c94e73 9e35de08f0e3ab948a78b24da19c1105 { 'aliquot_tag': 'ALQ_a321e322', 'gdc_sample_type': 'Primary Tumor' } @@ -8848,11 +9546,11 @@ C3L-01958.MethArray.Green.T C3L-01958 CCRCC Methylation Array tumor CPT010037000 C3L-01958.MethArray.Red.T C3L-01958 CCRCC Methylation Array tumor CPT0100370009 202234370093_R07C01_Red.idat 13676232 IDAT Red NA CPTAC3 60d6724c-7605-4f36-90a8-418fb04a1ec2 dbbf5f053db8da308fd108749de11387 { 'aliquot_tag': 'ALQ_42d45d94', 'gdc_sample_type': 'Primary Tumor' } C3L-01958.miRNA-Seq.T C3L-01958 CCRCC miRNA-Seq tumor CPT0100370006 180828_UNC32-K00270_0112_AHWTLNBBXX_GAGTGG_S15_L006_R1_001.unaln.bam 218019570 BAM unaligned CPTAC3 b9f0fa0c-4d9e-4816-9d7b-b85a057c7f55 3ad0811576c2d2a180d629b704158a59 { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor' } C3L-01958.miRNA-Seq.T.hg38 C3L-01958 CCRCC miRNA-Seq tumor CPT0100370006 1ed7261a-2b75-446e-8776-7341d971b3ab_mirnaseq_gdc_realn.bam 243518404 BAM harmonized CPTAC3 3521c557-f4d6-4054-b2bf-1563ca358b3e dd18df604c1a086fb075eedf21314ca8 { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor' } -C3L-01958.RNA-Seq.chimeric.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9bb518df-f5a3-4c2b-b44b-e0c86bc369af.rna_seq.chimeric.gdc_realn.bam 44280357 BAM chimeric harmonized CPTAC3 ea003c33-3374-4fb1-8dc3-4355662c1ea8 8bc91b8e8f3f467320e4bb2b0056f123 { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor' } -C3L-01958.RNA-Seq.genomic.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9bb518df-f5a3-4c2b-b44b-e0c86bc369af.rna_seq.genomic.gdc_realn.bam 10277609949 BAM genomic harmonized CPTAC3 52757403-ce43-4258-95f8-8f26c6cec51e 5b3b029e7ae5a6ee8ac62d842502aac1 { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor' } -C3L-01958.RNA-Seq.R1_L005.T C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTGAT_S16_L005_R1_001.fastq.gz 4642650499 FASTQ R1_L005 unaligned CPTAC3 a39f2ceb-b3dd-4206-8ab9-2a5137d085ab 03e619253d7e149384f8300ad37dcfbf { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor' } -C3L-01958.RNA-Seq.R2_L005.T C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTGAT_S16_L005_R2_001.fastq.gz 5063056216 FASTQ R2_L005 unaligned CPTAC3 01c44fbd-7f32-429d-8a5e-2c67c5a759ed b0a20dddec5cbec498a0e831617fe24a { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor' } -C3L-01958.RNA-Seq.transcriptome.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9bb518df-f5a3-4c2b-b44b-e0c86bc369af.rna_seq.transcriptome.gdc_realn.bam 10455402972 BAM transcriptome harmonized CPTAC3 76fbb08f-db7a-4974-af04-fdb711ca4147 83dbc88a4a96766942196ff644a503e1 { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor' } +C3L-01958.RNA-Seq.chimeric.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9b68d5d8-0a58-4c12-8a98-5a384c6be7b0.rna_seq.chimeric.gdc_realn.bam 44269243 BAM chimeric harmonized CPTAC3 e769880c-f5b7-409a-9f3d-8838e49dd9b0 02c7f7167c3e03d5d3f3b8e60505be93 { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor' } +C3L-01958.RNA-Seq.genomic.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9b68d5d8-0a58-4c12-8a98-5a384c6be7b0.rna_seq.genomic.gdc_realn.bam 10278615093 BAM genomic harmonized CPTAC3 f45c852c-757c-4a82-aef0-9e926aeea512 7381d45f22778871d7be911990b3d038 { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor' } +C3L-01958.RNA-Seq.R1_L005.T C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTGAT_S16_L005_R1_001.fastq.gz 4642650499 FASTQ R1_L005 unaligned CPTAC3 a39f2ceb-b3dd-4206-8ab9-2a5137d085ab 03e619253d7e149384f8300ad37dcfbf { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01958.RNA-Seq.R2_L005.T C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTGAT_S16_L005_R2_001.fastq.gz 5063056216 FASTQ R2_L005 unaligned CPTAC3 01c44fbd-7f32-429d-8a5e-2c67c5a759ed b0a20dddec5cbec498a0e831617fe24a { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01958.RNA-Seq.transcriptome.T.hg38 C3L-01958 CCRCC RNA-Seq tumor CPT0100370006 9b68d5d8-0a58-4c12-8a98-5a384c6be7b0.rna_seq.transcriptome.gdc_realn.bam 11841049764 BAM transcriptome harmonized CPTAC3 b70b95f5-cac9-487f-a45e-2ca67725ba31 e1995c82e8b3960399be90482da6d1f0 { 'aliquot_tag': 'ALQ_d26b4005', 'gdc_sample_type': 'Primary Tumor' } C3L-01958.WGS.N C3L-01958 CCRCC WGS blood_normal CPT0101910002 CPT0101910002.WholeGenome.RP-1303.bam 67325535791 BAM aligned CPTAC3 b3f2013f-8f4c-48e9-84d6-751ded37f432 b87cdfe83dd28979e813e69b22838222 { 'aliquot_tag': 'ALQ_5daa596e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01958.WGS.N.hg38 C3L-01958 CCRCC WGS blood_normal CPT0101910002 168bdd2c-ded5-4d4c-a41d-77745479c8f2_wgs_gdc_realn.bam 99482728827 BAM harmonized CPTAC3 47012a9e-ed95-4b84-af10-a0a005f17350 0156e1c544a6c398418e028ebeea5e7a { 'aliquot_tag': 'ALQ_5daa596e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01958.WGS.T C3L-01958 CCRCC WGS tumor CPT0100370009 CPT0100370009.WholeGenome.RP-1303.bam 65920073001 BAM aligned CPTAC3 ab704686-2c71-48ad-a981-4ddf4208e415 9915b7aebf33ba6b99ace60accd9820e { 'aliquot_tag': 'ALQ_42d45d94', 'gdc_sample_type': 'Primary Tumor' } @@ -8865,11 +9563,11 @@ C3L-01960.MethArray.Green.T C3L-01960 CCRCC Methylation Array tumor CPT038973000 C3L-01960.MethArray.Red.T C3L-01960 CCRCC Methylation Array tumor CPT0389730006 205589730117_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 34293d5d-63b7-466a-99d2-1713bbbb573e 96e7696f450e2a3b752ba5e01a12d011 { 'aliquot_tag': 'ALQ_d4f1d233', 'gdc_sample_type': 'Primary Tumor' } C3L-01960.miRNA-Seq.T C3L-01960 CCRCC miRNA-Seq tumor CPT0389730009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CACCGG_S20_L002_R1_001.unaln.bam 297332196 BAM unaligned CPTAC3 572a453b-e4e4-4f46-a525-69d45bdfbb3e 308665336798af82a5143ea3d6ecfa70 { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor' } C3L-01960.miRNA-Seq.T.hg38 C3L-01960 CCRCC miRNA-Seq tumor CPT0389730009 bd1efb40-71b7-49ca-b594-846aa4daa916_mirnaseq_gdc_realn.bam 319601340 BAM harmonized CPTAC3 a65302eb-446d-4efe-b8bf-cb204e702cb2 654add8c90bd7aa9a474cf1abb1dd512 { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01960.RNA-Seq.chimeric.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 8b1e0330-7ba2-4672-baac-1e181d60ee40.rna_seq.chimeric.gdc_realn.bam 266549147 BAM chimeric harmonized CPTAC3 69926cc4-1722-4700-81ba-f213e0549f9f be6fab6e8bc8739df5f1a86542433136 { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01960.RNA-Seq.genomic.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 8b1e0330-7ba2-4672-baac-1e181d60ee40.rna_seq.genomic.gdc_realn.bam 7042482598 BAM genomic harmonized CPTAC3 9b2ce8ca-ef3e-40e4-b392-801dc262678b 6796b281e3c683fbab9ae228ab72a5ed { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01960.RNA-Seq.R1_L002.T C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 210105_UNC32-K00270_0269_BHKN5MBBXY_TTACAGGA-TGACAAGC_S8_L002_R1_001.fastq.gz 3417662865 FASTQ R1_L002 unaligned CPTAC3 6f89d1ac-ee31-4f03-b888-45a45b31ab8e 2fe5bb20496332613357847114d31302 { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01960.RNA-Seq.R2_L002.T C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 210105_UNC32-K00270_0269_BHKN5MBBXY_TTACAGGA-TGACAAGC_S8_L002_R2_001.fastq.gz 3747889595 FASTQ R2_L002 unaligned CPTAC3 35f43882-1777-4ac0-b321-b12a62270471 53568e85f6482057a62103bb94371aa4 { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01960.RNA-Seq.transcriptome.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 8b1e0330-7ba2-4672-baac-1e181d60ee40.rna_seq.transcriptome.gdc_realn.bam 8146288995 BAM transcriptome harmonized CPTAC3 52bf1885-aacf-4ee5-bc18-5a5fbd2b4bb5 c228974b169ea85df6abc2e0cab2a0ba { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01960.RNA-Seq.chimeric.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 3d0851a6-3184-432e-8541-e2ca97dabeff.rna_seq.chimeric.gdc_realn.bam 266584673 BAM chimeric harmonized CPTAC3 710aebc6-13cd-4075-8032-b7d90984df90 a07d2f99f511e0f788c30d92b67e5a7d { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01960.RNA-Seq.genomic.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 3d0851a6-3184-432e-8541-e2ca97dabeff.rna_seq.genomic.gdc_realn.bam 7047435524 BAM genomic harmonized CPTAC3 8143f24d-a1b4-419b-9df8-5454e99aa5b4 0f316888a729a585069ce65c7a412fc7 { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01960.RNA-Seq.R1_L002.T C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 210105_UNC32-K00270_0269_BHKN5MBBXY_TTACAGGA-TGACAAGC_S8_L002_R1_001.fastq.gz 3417662865 FASTQ R1_L002 unaligned CPTAC3 6f89d1ac-ee31-4f03-b888-45a45b31ab8e 2fe5bb20496332613357847114d31302 { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-01960.RNA-Seq.R2_L002.T C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 210105_UNC32-K00270_0269_BHKN5MBBXY_TTACAGGA-TGACAAGC_S8_L002_R2_001.fastq.gz 3747889595 FASTQ R2_L002 unaligned CPTAC3 35f43882-1777-4ac0-b321-b12a62270471 53568e85f6482057a62103bb94371aa4 { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-01960.RNA-Seq.transcriptome.T.hg38 C3L-01960 CCRCC RNA-Seq tumor CPT0389730009 3d0851a6-3184-432e-8541-e2ca97dabeff.rna_seq.transcriptome.gdc_realn.bam 9358008687 BAM transcriptome harmonized CPTAC3 b9088eab-80d1-4184-a9b5-f3daf0a7a975 4829121a6d9744f7fbb0349abd757f3c { 'aliquot_tag': 'ALQ_444ecfa2', 'gdc_sample_type': 'Primary Tumor' } C3L-01960.WGS.N C3L-01960 CCRCC WGS blood_normal CPT0389760002 CPT0389760002.WholeGenome.RP-2158.bam 21502252470 BAM aligned CPTAC3 66a44ce2-a925-4e87-aedb-e3c8c80f7741 a029cbf43288aec12b5bb2bae12f5a49 { 'aliquot_tag': 'ALQ_1b7c995a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01960.WGS.N.hg38 C3L-01960 CCRCC WGS blood_normal CPT0389760002 103e51f0-bea5-404a-a5f6-7857f9a4cb19_wgs_gdc_realn.bam 65846421329 BAM harmonized CPTAC3 20e975e7-309a-416a-995a-1d024372fad2 fa0db1d0ded9ddf4ef061804b8a33e97 { 'aliquot_tag': 'ALQ_1b7c995a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01960.WGS.T C3L-01960 CCRCC WGS tumor CPT0389730006 CPT0389730006.WholeGenome.RP-2158.bam 24635084665 BAM aligned CPTAC3 b3407d1c-249b-4be7-80e0-491766c1e818 2006f45a0d2bd7f4c01662e9775a29bc { 'aliquot_tag': 'ALQ_d4f1d233', 'gdc_sample_type': 'Primary Tumor' } @@ -8886,16 +9584,16 @@ C3L-01962.miRNA-Seq.A C3L-01962 CCRCC miRNA-Seq tissue_normal CPT0389660009 2101 C3L-01962.miRNA-Seq.A.hg38 C3L-01962 CCRCC miRNA-Seq tissue_normal CPT0389660009 094296a8-a39f-4924-9396-166e3632e352_mirnaseq_gdc_realn.bam 361233849 BAM harmonized CPTAC3 6e7803a9-cd77-443b-845f-c20fa24a87af ea626fd378bc7f9f14b7658a5edd95d3 { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01962.miRNA-Seq.T C3L-01962 CCRCC miRNA-Seq tumor CPT0389650009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CAAAAG_S7_L001_R1_001.unaln.bam 355437813 BAM unaligned CPTAC3 e26747ae-fbdd-40a6-b121-e61453deeb61 68e0641de1a317604e64fc78151237e9 { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor' } C3L-01962.miRNA-Seq.T.hg38 C3L-01962 CCRCC miRNA-Seq tumor CPT0389650009 18b1b3a8-e009-419e-8d59-c657b80864a9_mirnaseq_gdc_realn.bam 387327722 BAM harmonized CPTAC3 0dceab24-1b8b-422d-a1f0-49cab95390b3 ef23e7f7c90a4e37b2f9c03c633278c8 { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01962.RNA-Seq.chimeric.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 eca3b2b2-1313-4095-8ab3-5b08f84f62eb.rna_seq.chimeric.gdc_realn.bam 390659900 BAM chimeric harmonized CPTAC3 c26b5801-6d94-42aa-a3ce-c7a9dc8ba5d4 dc4975b8f2ec81aea6b8bbabdb71b865 { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01962.RNA-Seq.chimeric.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 1c3c14a2-34ed-46ed-8e8f-89502d4a509b.rna_seq.chimeric.gdc_realn.bam 376959060 BAM chimeric harmonized CPTAC3 cdfb6d08-7a1a-4202-a99b-073042e41b44 c13386d099e7a17dd2ce2bdb32703656 { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01962.RNA-Seq.genomic.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 eca3b2b2-1313-4095-8ab3-5b08f84f62eb.rna_seq.genomic.gdc_realn.bam 8839624509 BAM genomic harmonized CPTAC3 fffd83ff-cee5-48ca-b62d-92085032f0b0 26b5cbf3e2d5965ae5264d513470d1f3 { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01962.RNA-Seq.genomic.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 1c3c14a2-34ed-46ed-8e8f-89502d4a509b.rna_seq.genomic.gdc_realn.bam 7853529275 BAM genomic harmonized CPTAC3 aa73d0d9-5e60-40cf-b640-806d317ea2c7 7a64a590d440b647bbc5e6a968d1b289 { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01962.RNA-Seq.R1_L002.A C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 4129963228 FASTQ R1_L002 unaligned CPTAC3 90163ff4-00c6-4827-9052-5ab802f312b8 f1cd9f7ba08ddb088545e2dbbd957700 { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01962.RNA-Seq.R1_L003.T C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 210105_UNC32-K00270_0269_BHKN5MBBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 3725953474 FASTQ R1_L003 unaligned CPTAC3 7851811d-d666-4e23-b58f-7f40da924e59 8eb7097d3bbabb8607751e9a5cf9d139 { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01962.RNA-Seq.R2_L002.A C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 4563350768 FASTQ R2_L002 unaligned CPTAC3 740424a0-f73a-4662-85df-6f97ee2a2a87 ffdb68d72fcfbf2a322627fe5fa347b0 { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01962.RNA-Seq.R2_L003.T C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 210105_UNC32-K00270_0269_BHKN5MBBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 4245517766 FASTQ R2_L003 unaligned CPTAC3 9ea5fe71-b337-4238-ac51-a6cf1c2364a4 6359f1e857ff53cb206fd5b5c6e6ef4a { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor' } -C3L-01962.RNA-Seq.transcriptome.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 eca3b2b2-1313-4095-8ab3-5b08f84f62eb.rna_seq.transcriptome.gdc_realn.bam 8849850112 BAM transcriptome harmonized CPTAC3 a0124821-13dd-43fa-91d0-8b03af51f0e1 3cf742499722e477d4c036b787297536 { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01962.RNA-Seq.transcriptome.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 1c3c14a2-34ed-46ed-8e8f-89502d4a509b.rna_seq.transcriptome.gdc_realn.bam 8584096170 BAM transcriptome harmonized CPTAC3 2c85c8f5-13b7-47c0-a66f-c564bb44db27 7b5129f0f755a9f159abeb90c1319764 { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01962.RNA-Seq.chimeric.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 459800a2-632b-49d3-909d-ca9c9814296b.rna_seq.chimeric.gdc_realn.bam 390703292 BAM chimeric harmonized CPTAC3 37337098-7634-4d67-842a-03145dfc6c4a 16924c393860bf87095bbe209c6642ff { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01962.RNA-Seq.chimeric.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 55f58be6-fa90-4898-ab19-00687a1cdc58.rna_seq.chimeric.gdc_realn.bam 376996206 BAM chimeric harmonized CPTAC3 6dd07296-f035-49ae-9dc6-caaa0dc1a08d 77b6669150dfcfaf2c41c408df959921 { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01962.RNA-Seq.genomic.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 459800a2-632b-49d3-909d-ca9c9814296b.rna_seq.genomic.gdc_realn.bam 8846093949 BAM genomic harmonized CPTAC3 ae2a2448-e7eb-40a9-9d96-41219190bb02 165a90cec317acfc7a484bb498f19ae9 { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01962.RNA-Seq.genomic.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 55f58be6-fa90-4898-ab19-00687a1cdc58.rna_seq.genomic.gdc_realn.bam 7859613123 BAM genomic harmonized CPTAC3 7076a2c3-3eb1-46a1-9bc8-d2d806b87a2b e1aeffca54084416917d8dba8139db3e { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor' } +C3L-01962.RNA-Seq.R1_L002.A C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 4129963228 FASTQ R1_L002 unaligned CPTAC3 90163ff4-00c6-4827-9052-5ab802f312b8 f1cd9f7ba08ddb088545e2dbbd957700 { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-01962.RNA-Seq.R1_L003.T C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 210105_UNC32-K00270_0269_BHKN5MBBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 3725953474 FASTQ R1_L003 unaligned CPTAC3 7851811d-d666-4e23-b58f-7f40da924e59 8eb7097d3bbabb8607751e9a5cf9d139 { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-01962.RNA-Seq.R2_L002.A C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 4563350768 FASTQ R2_L002 unaligned CPTAC3 740424a0-f73a-4662-85df-6f97ee2a2a87 ffdb68d72fcfbf2a322627fe5fa347b0 { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-01962.RNA-Seq.R2_L003.T C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 210105_UNC32-K00270_0269_BHKN5MBBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 4245517766 FASTQ R2_L003 unaligned CPTAC3 9ea5fe71-b337-4238-ac51-a6cf1c2364a4 6359f1e857ff53cb206fd5b5c6e6ef4a { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-01962.RNA-Seq.transcriptome.A.hg38 C3L-01962 CCRCC RNA-Seq tissue_normal CPT0389660009 459800a2-632b-49d3-909d-ca9c9814296b.rna_seq.transcriptome.gdc_realn.bam 10121543876 BAM transcriptome harmonized CPTAC3 e648be29-d633-4dac-937c-97db0bd1e275 17b3e1d0d4fd7db60a6cce2f5207fdd9 { 'aliquot_tag': 'ALQ_47f29377', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01962.RNA-Seq.transcriptome.T.hg38 C3L-01962 CCRCC RNA-Seq tumor CPT0389650009 55f58be6-fa90-4898-ab19-00687a1cdc58.rna_seq.transcriptome.gdc_realn.bam 9858214132 BAM transcriptome harmonized CPTAC3 70ceab75-b58a-48b8-880d-d2bdef26405a cf77087bab2344bd141a3880bba74704 { 'aliquot_tag': 'ALQ_52e9a7', 'gdc_sample_type': 'Primary Tumor' } C3L-01962.WGS.N C3L-01962 CCRCC WGS blood_normal CPT0389710002 CPT0389710002.WholeGenome.RP-2158.bam 33702716635 BAM aligned CPTAC3 ae6f1ff3-5cc6-4f8e-9ce5-6c76761de7d6 2c86e5342f796eb045240a37c3cd42e4 { 'aliquot_tag': 'ALQ_a95c454a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01962.WGS.N.hg38 C3L-01962 CCRCC WGS blood_normal CPT0389710002 f8213505-75c6-4165-8bd8-72b44f0d5f35_wgs_gdc_realn.bam 103228384049 BAM harmonized CPTAC3 962d01a8-afc6-4290-b289-004e4b84fdde 7e7149496fa014cb9bf002ee7b784061 { 'aliquot_tag': 'ALQ_a95c454a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01962.WGS.T C3L-01962 CCRCC WGS tumor CPT0389650006 CPT0389650006.WholeGenome.RP-2158.bam 23513442958 BAM aligned CPTAC3 e781ef67-f7bf-44ee-8cac-3f0299c18830 fb7322b786f83508993209908c2b1d42 { 'aliquot_tag': 'ALQ_90edf436', 'gdc_sample_type': 'Primary Tumor' } @@ -8910,11 +9608,11 @@ C3L-01963.MethArray.Green.T C3L-01963 CCRCC Methylation Array tumor CPT010032000 C3L-01963.MethArray.Red.T C3L-01963 CCRCC Methylation Array tumor CPT0100320009 202234380061_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 0beb978e-7125-44c1-8b67-0fa402a4e474 d1984f5e405774c1ccf19270afc22fde { 'aliquot_tag': 'ALQ_8a34d2e4', 'gdc_sample_type': 'Primary Tumor' } C3L-01963.miRNA-Seq.T C3L-01963 CCRCC miRNA-Seq tumor CPT0100320006 180828_UNC32-K00270_0112_AHWTLNBBXX_GGTAGC_S24_L006_R1_001.unaln.bam 217559799 BAM unaligned CPTAC3 6f318922-92a6-4561-8ded-a0b69fb67306 47905586566cb927804a02b56785874e { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor' } C3L-01963.miRNA-Seq.T.hg38 C3L-01963 CCRCC miRNA-Seq tumor CPT0100320006 65f7612f-047e-483c-a42a-f4c9c7a36c69_mirnaseq_gdc_realn.bam 248090391 BAM harmonized CPTAC3 446dfafa-e69f-4181-b8b4-0be48ae9e441 24c0900dd0f564fb0203936dc9ca4a01 { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor' } -C3L-01963.RNA-Seq.chimeric.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 cc198a65-0817-4afe-9ed8-21364fdfb4f6.rna_seq.chimeric.gdc_realn.bam 57735351 BAM chimeric harmonized CPTAC3 a11b9cf6-9297-48c3-bf83-d2169ea55c97 4b015ddd55a9e966d1861aca6d16d94b { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor' } -C3L-01963.RNA-Seq.genomic.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 cc198a65-0817-4afe-9ed8-21364fdfb4f6.rna_seq.genomic.gdc_realn.bam 8941414641 BAM genomic harmonized CPTAC3 19bd0c2f-7ae2-481f-9758-ad612e77a888 c47ae8ba6c32ad25d488df9ec6193ae4 { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor' } -C3L-01963.RNA-Seq.R1_L005.T C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATTCCT_S19_L005_R1_001.fastq.gz 4172171312 FASTQ R1_L005 unaligned CPTAC3 8505c1ca-c192-4185-9488-e05ca000bb7c 78cf2904dbfd4d0a7d06f58a890df66a { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor' } -C3L-01963.RNA-Seq.R2_L005.T C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATTCCT_S19_L005_R2_001.fastq.gz 4569844205 FASTQ R2_L005 unaligned CPTAC3 e7918878-b95e-4723-bbae-29e7cb71f8d5 2cab707b1e13ba60a1471970cabbd879 { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor' } -C3L-01963.RNA-Seq.transcriptome.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 cc198a65-0817-4afe-9ed8-21364fdfb4f6.rna_seq.transcriptome.gdc_realn.bam 8898587227 BAM transcriptome harmonized CPTAC3 4955c096-5e47-48a0-a08c-b67e61091d72 ee0451e796e8ce11cff32820ace592f6 { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor' } +C3L-01963.RNA-Seq.chimeric.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 204846d9-d821-4401-a841-5953afc54336.rna_seq.chimeric.gdc_realn.bam 57726143 BAM chimeric harmonized CPTAC3 4042b991-f328-41d9-9ddb-88644dd415ba db80f05085e122624c2adbfab42e5069 { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor' } +C3L-01963.RNA-Seq.genomic.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 204846d9-d821-4401-a841-5953afc54336.rna_seq.genomic.gdc_realn.bam 8942399393 BAM genomic harmonized CPTAC3 fee8019a-c930-4717-8300-a9d6ccbfd767 b27904a7b8fb9844efaf500b787d8643 { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor' } +C3L-01963.RNA-Seq.R1_L005.T C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATTCCT_S19_L005_R1_001.fastq.gz 4172171312 FASTQ R1_L005 unaligned CPTAC3 8505c1ca-c192-4185-9488-e05ca000bb7c 78cf2904dbfd4d0a7d06f58a890df66a { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-01963.RNA-Seq.R2_L005.T C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATTCCT_S19_L005_R2_001.fastq.gz 4569844205 FASTQ R2_L005 unaligned CPTAC3 e7918878-b95e-4723-bbae-29e7cb71f8d5 2cab707b1e13ba60a1471970cabbd879 { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-01963.RNA-Seq.transcriptome.T.hg38 C3L-01963 CCRCC RNA-Seq tumor CPT0100320006 204846d9-d821-4401-a841-5953afc54336.rna_seq.transcriptome.gdc_realn.bam 10113415072 BAM transcriptome harmonized CPTAC3 137c4d86-3e0f-4204-961d-cce26c7be5a0 522b8f91098df19a0fb82fbc97363f2f { 'aliquot_tag': 'ALQ_1a8bcf75', 'gdc_sample_type': 'Primary Tumor' } C3L-01963.WGS.N C3L-01963 CCRCC WGS blood_normal CPT0101890002 CPT0101890002.WholeGenome.RP-1303.bam 57256663390 BAM aligned CPTAC3 97240d1b-b129-4537-9dd8-58a254581fba 5fa188314d68f500231bfad2e5c85c99 { 'aliquot_tag': 'ALQ_a686c10a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01963.WGS.N.hg38 C3L-01963 CCRCC WGS blood_normal CPT0101890002 e2755a99-ff45-4a2c-9d57-0a01d0e2e979_wgs_gdc_realn.bam 83056219291 BAM harmonized CPTAC3 92d8e354-101d-45fe-9bf8-6c6a0488de8d 2caf4682739754b0def022340f043b8f { 'aliquot_tag': 'ALQ_a686c10a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-01963.WGS.T C3L-01963 CCRCC WGS tumor CPT0100320009 CPT0100320009.WholeGenome.RP-1303.bam 64104547237 BAM aligned CPTAC3 95ea6301-37a6-4a87-9347-3c8891c6dc4e 44fe72ef37ec5e291cd19c8d4f607cbd { 'aliquot_tag': 'ALQ_8a34d2e4', 'gdc_sample_type': 'Primary Tumor' } @@ -8929,18 +9627,21 @@ C3L-01967.miRNA-Seq.A C3L-01967 UCEC miRNA-Seq tissue_normal CPT0108790006 18111 C3L-01967.miRNA-Seq.A.hg38 C3L-01967 UCEC miRNA-Seq tissue_normal CPT0108790006 c0d6a909-d5e6-4b49-9101-dcc3724f02bd_mirnaseq_gdc_realn.bam 336455431 BAM harmonized CPTAC3 6d6b1402-a5ed-4cf9-bb2a-a10ca58f0ef1 3a9bfb554d1f614f02161546ac604c70 { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01967.miRNA-Seq.T C3L-01967 UCEC miRNA-Seq tumor CPT0108750006 181119_UNC31-K00269_0165_AH27WCBBXY_ATGTCA_S39_L003_R1_001.unaln.bam 260907202 BAM unaligned CPTAC3 bf363d7f-59bb-4f9e-b78f-16c21d8233ea 97db5b09267a887cbde9555ace65b487 { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor' } C3L-01967.miRNA-Seq.T.hg38 C3L-01967 UCEC miRNA-Seq tumor CPT0108750006 e29719d5-95c7-4146-a893-993d51692d1e_mirnaseq_gdc_realn.bam 289379267 BAM harmonized CPTAC3 9c272b1a-54bb-47b9-88a2-5cc2993862be 182669cc9bab2a30fef2df8d646ed118 { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor' } -C3L-01967.RNA-Seq.chimeric.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 db24af0f-230d-47e2-89b2-606c01f5cd71.rna_seq.chimeric.gdc_realn.bam 67397101 BAM chimeric harmonized CPTAC3 5e0de98e-0963-46ca-a939-542e6a41872d f25a83d17d85f06368a04441e6545d86 { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01967.RNA-Seq.chimeric.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 291685f8-7ab1-4e29-8fd2-0d4d645e26a2.rna_seq.chimeric.gdc_realn.bam 68470272 BAM chimeric harmonized CPTAC3 434c2c72-296d-4544-af26-30a0b2eff540 dc88c211b3d7e707f9c2be88ca952a22 { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor' } -C3L-01967.RNA-Seq.genomic.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 db24af0f-230d-47e2-89b2-606c01f5cd71.rna_seq.genomic.gdc_realn.bam 8921805268 BAM genomic harmonized CPTAC3 98d67e13-fde5-4415-acd2-54e3fa53b127 b9a5d42075c6fefb182f47de580781a7 { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01967.RNA-Seq.genomic.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 291685f8-7ab1-4e29-8fd2-0d4d645e26a2.rna_seq.genomic.gdc_realn.bam 9857821881 BAM genomic harmonized CPTAC3 6e9aa422-842e-48a1-861d-47e216dbd52d 926f3c897338be20ce23abaac68944ec { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor' } -C3L-01967.RNA-Seq.R1_L003.A C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 180516_UNC31-K00269_0130_BHV22JBBXX_GATCAG_S9_L003_R1_001.fastq.gz 4097490512 FASTQ R1_L003 unaligned CPTAC3 74d46258-f21a-4f4e-b04e-96340efb60e3 50aacef8aeb92136a900926e8caa2e98 { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01967.RNA-Seq.R1_L006.T C3L-01967 UCEC RNA-Seq tumor CPT0108750006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTTCC_S21_L006_R1_001.fastq.gz 4413815726 FASTQ R1_L006 unaligned CPTAC3 d7ed9bb4-a7f6-4516-86ec-e6cf1fa395ad 3bedda0c94387ac59b87029e11af9cd7 { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor' } -C3L-01967.RNA-Seq.R1_.T C3L-01967 UCEC RNA-Seq tumor CPT0108810001 20210723_P2_A8_WB7988-plate2_S8_R1_001.fastq.gz 3757601817 FASTQ R1_ unaligned CPTAC3 46da3bde-ee2c-4a41-98e3-098cd192dd03 c57a776a3a335312cd2b4060a13a18db { 'aliquot_tag': 'ALQ_9a679ea2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01967.RNA-Seq.R2_L003.A C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 180516_UNC31-K00269_0130_BHV22JBBXX_GATCAG_S9_L003_R2_001.fastq.gz 4491544632 FASTQ R2_L003 unaligned CPTAC3 fccdf1bc-36b2-4923-b46d-591968fc7c8b 477dfefb4072f2f5cb4769b9fc3dd40c { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01967.RNA-Seq.R2_L006.T C3L-01967 UCEC RNA-Seq tumor CPT0108750006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTTCC_S21_L006_R2_001.fastq.gz 4970728519 FASTQ R2_L006 unaligned CPTAC3 22a3da5a-689e-494d-be36-0f9c0b42a263 1eee68799d2ce9ac647999f406126619 { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor' } -C3L-01967.RNA-Seq.R2_.T C3L-01967 UCEC RNA-Seq tumor CPT0108810001 20210723_P2_A8_WB7988-plate2_S8_R2_001.fastq.gz 3840259151 FASTQ R2_ unaligned CPTAC3 95c0b8d9-5c4c-40db-8544-7eeeb9fbedfc b99164984591f066588cacdc0bc97c9f { 'aliquot_tag': 'ALQ_9a679ea2', 'gdc_sample_type': 'Primary Tumor' } -C3L-01967.RNA-Seq.transcriptome.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 db24af0f-230d-47e2-89b2-606c01f5cd71.rna_seq.transcriptome.gdc_realn.bam 9653732375 BAM transcriptome harmonized CPTAC3 3c863d7d-8c6d-4e06-b132-a58890ec8a1c b64cb183fc5256d8b899defe4c24419b { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01967.RNA-Seq.transcriptome.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 291685f8-7ab1-4e29-8fd2-0d4d645e26a2.rna_seq.transcriptome.gdc_realn.bam 10915447537 BAM transcriptome harmonized CPTAC3 7d649a3c-7942-443a-afbe-b2fea1cc8f7a 2bd2c7fbcf338cebba088c27f911a541 { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor' } +C3L-01967.RNA-Seq.chimeric.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 e5325dd8-867a-4cc2-8b93-9b0b58fc32f3.rna_seq.chimeric.gdc_realn.bam 67348615 BAM chimeric harmonized CPTAC3 0adffc77-c782-4c8b-a330-e0821a70af08 6982a7156aae5142218188fbaa5344ff { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01967.RNA-Seq.chimeric.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 75073929-f7b1-4165-a786-60f733b962d9.rna_seq.chimeric.gdc_realn.bam 68459647 BAM chimeric harmonized CPTAC3 67f98baf-efb3-4417-8ec1-33440a845386 69717a7437cd1b5da337237cf1654fff { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor' } +C3L-01967.RNA-Seq.chimeric.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108810001 6a6ccdf5-9405-409a-a161-72e875400889.rna_seq.chimeric.gdc_realn.bam 121443503 BAM chimeric harmonized CPTAC3 4c34f079-a05f-4749-8b35-cfbb673ba83d 3e31d5178d545a6c4bde26ab8b3ec299 { 'aliquot_tag': 'ALQ_9a679ea2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01967.RNA-Seq.genomic.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 e5325dd8-867a-4cc2-8b93-9b0b58fc32f3.rna_seq.genomic.gdc_realn.bam 8922883280 BAM genomic harmonized CPTAC3 95d741d5-838c-4037-8e9a-f75d09a3ecc7 0bd6eafcef8221a235d14ec647c6e432 { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01967.RNA-Seq.genomic.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 75073929-f7b1-4165-a786-60f733b962d9.rna_seq.genomic.gdc_realn.bam 9859230876 BAM genomic harmonized CPTAC3 211ba8b7-93de-40ce-b67b-902f65f8febe 20e50f3f5c59a11f31851982de214ca9 { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor' } +C3L-01967.RNA-Seq.genomic.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108810001 6a6ccdf5-9405-409a-a161-72e875400889.rna_seq.genomic.gdc_realn.bam 5850682957 BAM genomic harmonized CPTAC3 4d82d3cb-dfdb-4b2e-86d4-8adfba8808ec 7d43eca6bed6bf05196c4be38baa1330 { 'aliquot_tag': 'ALQ_9a679ea2', 'gdc_sample_type': 'Primary Tumor' } +C3L-01967.RNA-Seq.R1_L003.A C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 180516_UNC31-K00269_0130_BHV22JBBXX_GATCAG_S9_L003_R1_001.fastq.gz 4097490512 FASTQ R1_L003 unaligned CPTAC3 74d46258-f21a-4f4e-b04e-96340efb60e3 50aacef8aeb92136a900926e8caa2e98 { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-01967.RNA-Seq.R1_L006.T C3L-01967 UCEC RNA-Seq tumor CPT0108750006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTTCC_S21_L006_R1_001.fastq.gz 4413815726 FASTQ R1_L006 unaligned CPTAC3 d7ed9bb4-a7f6-4516-86ec-e6cf1fa395ad 3bedda0c94387ac59b87029e11af9cd7 { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01967.RNA-Seq.R2_L003.A C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 180516_UNC31-K00269_0130_BHV22JBBXX_GATCAG_S9_L003_R2_001.fastq.gz 4491544632 FASTQ R2_L003 unaligned CPTAC3 fccdf1bc-36b2-4923-b46d-591968fc7c8b 477dfefb4072f2f5cb4769b9fc3dd40c { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-01967.RNA-Seq.R2_L006.T C3L-01967 UCEC RNA-Seq tumor CPT0108750006 171109_UNC31-K00269_0091_BHMFGTBBXX_AGTTCC_S21_L006_R2_001.fastq.gz 4970728519 FASTQ R2_L006 unaligned CPTAC3 22a3da5a-689e-494d-be36-0f9c0b42a263 1eee68799d2ce9ac647999f406126619 { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01967.RNA-Seq.T C3L-01967 UCEC RNA-Seq tumor CPT0108810001 20210723_P2_A8_WB7988-plate2_S8_R1_001.fastq.gz 3757601817 FASTQ unaligned CPTAC3 46da3bde-ee2c-4a41-98e3-098cd192dd03 c57a776a3a335312cd2b4060a13a18db +C3L-01967.RNA-Seq.T C3L-01967 UCEC RNA-Seq tumor CPT0108810001 20210723_P2_A8_WB7988-plate2_S8_R2_001.fastq.gz 3840259151 FASTQ unaligned CPTAC3 95c0b8d9-5c4c-40db-8544-7eeeb9fbedfc b99164984591f066588cacdc0bc97c9f +C3L-01967.RNA-Seq.transcriptome.A.hg38 C3L-01967 UCEC RNA-Seq tissue_normal CPT0108790006 e5325dd8-867a-4cc2-8b93-9b0b58fc32f3.rna_seq.transcriptome.gdc_realn.bam 11233841877 BAM transcriptome harmonized CPTAC3 53d12e64-ae56-453c-9870-068a8a479843 a7ec409a09facc00d52752b81d2dba05 { 'aliquot_tag': 'ALQ_c525f215', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01967.RNA-Seq.transcriptome.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108750006 75073929-f7b1-4165-a786-60f733b962d9.rna_seq.transcriptome.gdc_realn.bam 12454204394 BAM transcriptome harmonized CPTAC3 33c9cf08-fe8d-42f0-ad0e-2decc737046f 2d793e099b305ee54037523443f00c59 { 'aliquot_tag': 'ALQ_d51f14', 'gdc_sample_type': 'Primary Tumor' } +C3L-01967.RNA-Seq.transcriptome.T.hg38 C3L-01967 UCEC RNA-Seq tumor CPT0108810001 6a6ccdf5-9405-409a-a161-72e875400889.rna_seq.transcriptome.gdc_realn.bam 3333635265 BAM transcriptome harmonized CPTAC3 2c8b0ce8-f193-4e67-a517-a5b180df6428 708d3235efe40456576da2e91bf35f3f { 'aliquot_tag': 'ALQ_9a679ea2', 'gdc_sample_type': 'Primary Tumor' } C3L-01967.WGS.A C3L-01967 UCEC WGS tissue_normal CPT0108790009 CPT0108790009.WholeGenome.RP-1303.bam 60116612201 BAM aligned CPTAC3 959f0294-1ba2-476c-991c-07f1bbf75e05 55b80d12183c2fe5429b0456f29583e2 { 'aliquot_tag': 'ALQ_559aef84', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01967.WGS.A.hg38 C3L-01967 UCEC WGS tissue_normal CPT0108790009 e783f1a5-04c3-4885-9700-d31847165b48_wgs_gdc_realn.bam 87786339082 BAM harmonized CPTAC3 55fdfd29-dcdd-4f5e-872f-ed3b2fc4391e c97723b49f64e5ac2c56fd1f57f78981 { 'aliquot_tag': 'ALQ_559aef84', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01967.WGS.N C3L-01967 UCEC WGS blood_normal CPT0108350002 CPT0108350002.WholeGenome.RP-1303.bam 73651233491 BAM aligned CPTAC3 61b10ca7-d61d-4ae0-83c2-c6971a632aea 607f0857465ed92eab97e034940ba694 { 'aliquot_tag': 'ALQ_9c29991b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -8959,8 +9660,8 @@ C3L-01971.miRNA-Seq.T C3L-01971 PDA miRNA-Seq tumor CPT0108930006 181119_UNC31-K C3L-01971.miRNA-Seq.T.hg38 C3L-01971 PDA miRNA-Seq tumor CPT0108930006 6196237e-70c1-4ac0-9ff4-b38520c8a854_mirnaseq_gdc_realn.bam 268553445 BAM harmonized CPTAC3 5469e56a-4901-444d-a077-ea11a415faaf 95c3e5d15a7ea75f1f6a58366d4d668e { 'aliquot_tag': 'ALQ_b59f8bc4', 'gdc_sample_type': 'Primary Tumor' } C3L-01971.RNA-Seq.chimeric.T.hg38 C3L-01971 PDA RNA-Seq tumor CPT0108930006 fa0a429e-a6c3-4bfd-ac08-563b166e174e.rna_seq.chimeric.gdc_realn.bam 68651865 BAM chimeric harmonized CPTAC3 4ecf2ce1-d070-4961-bfef-f3ce3d3362ce 77b13fdf0b8d5c2807447e9f949aad3f { 'aliquot_tag': 'ALQ_b59f8bc4', 'gdc_sample_type': 'Primary Tumor' } C3L-01971.RNA-Seq.genomic.T.hg38 C3L-01971 PDA RNA-Seq tumor CPT0108930006 fa0a429e-a6c3-4bfd-ac08-563b166e174e.rna_seq.genomic.gdc_realn.bam 8684543702 BAM genomic harmonized CPTAC3 9b4a6db6-7979-4107-9899-591d1e052b8d ec2207d90db2e682f772a5ad2dff2648 { 'aliquot_tag': 'ALQ_b59f8bc4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01971.RNA-Seq.R1_L006.T C3L-01971 PDA RNA-Seq tumor CPT0108930006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3546049460 FASTQ R1_L006 unaligned CPTAC3 99349916-a315-4682-9e02-d9afda5b73b3 d736e1109f9314b9d9247e4e58479111 { 'aliquot_tag': 'ALQ_b59f8bc4', 'gdc_sample_type': 'Primary Tumor' } -C3L-01971.RNA-Seq.R2_L006.T C3L-01971 PDA RNA-Seq tumor CPT0108930006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3998905656 FASTQ R2_L006 unaligned CPTAC3 04d12709-918a-43df-82c7-07bf8c3e52f3 f9b3351b7f725009e1818ec80504ec12 { 'aliquot_tag': 'ALQ_b59f8bc4', 'gdc_sample_type': 'Primary Tumor' } +C3L-01971.RNA-Seq.R1_L006.T C3L-01971 PDA RNA-Seq tumor CPT0108930006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3546049460 FASTQ R1_L006 unaligned CPTAC3 99349916-a315-4682-9e02-d9afda5b73b3 d736e1109f9314b9d9247e4e58479111 { 'aliquot_tag': 'ALQ_b59f8bc4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01971.RNA-Seq.R2_L006.T C3L-01971 PDA RNA-Seq tumor CPT0108930006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3998905656 FASTQ R2_L006 unaligned CPTAC3 04d12709-918a-43df-82c7-07bf8c3e52f3 f9b3351b7f725009e1818ec80504ec12 { 'aliquot_tag': 'ALQ_b59f8bc4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-01971.RNA-Seq.transcriptome.T.hg38 C3L-01971 PDA RNA-Seq tumor CPT0108930006 fa0a429e-a6c3-4bfd-ac08-563b166e174e.rna_seq.transcriptome.gdc_realn.bam 9766378217 BAM transcriptome harmonized CPTAC3 86a8d0ee-9d1b-4bfe-af3d-8bdfc11ecd6c 5a2476da11fc0dbfbccb72d4e358bfe8 { 'aliquot_tag': 'ALQ_b59f8bc4', 'gdc_sample_type': 'Primary Tumor' } C3L-01971.Targeted.T C3L-01971 PDA Targeted Sequencing tumor CPT0108930009_1 CPT0108930009_1.CustomSelection.RP-1303.PDO-18786.bam 4484410057 BAM aligned CPTAC3 269718aa-9795-4b90-ac93-7de66d298740 174d3fd87b63369719364c8c4dd6aba3 { 'aliquot_tag': 'ALQ_f384e91e', 'gdc_sample_type': 'Primary Tumor' } C3L-01971.Targeted.T.hg38 C3L-01971 PDA Targeted Sequencing tumor CPT0108930009_1 9a04e944-5951-497c-ba61-38fb9e5ca2a3_targetedsequencing_gdc_realn.bam 6286950402 BAM harmonized CPTAC3 eeec3718-62ab-4369-bf1e-40d82a03eb7b 18df9d3550f5f6ab583ba731a51bb835 { 'aliquot_tag': 'ALQ_f384e91e', 'gdc_sample_type': 'Primary Tumor' } @@ -8982,16 +9683,16 @@ C3L-01976.miRNA-Seq.A C3L-01976 CCRCC miRNA-Seq tissue_normal CPT0109530009 1811 C3L-01976.miRNA-Seq.A.hg38 C3L-01976 CCRCC miRNA-Seq tissue_normal CPT0109530009 435ef1e6-d700-4c20-b73f-c512c5f66db7_mirnaseq_gdc_realn.bam 314882085 BAM harmonized CPTAC3 b723d432-be91-458c-bb29-0a6b11f10671 19d8bbed1469a4554ec086384603d960 { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01976.miRNA-Seq.T C3L-01976 CCRCC miRNA-Seq tumor CPT0109500006 181119_UNC31-K00269_0165_AH27WCBBXY_GTAGAG_S41_L003_R1_001.unaln.bam 255307578 BAM unaligned CPTAC3 094999fb-a564-4e6e-a52f-20a79bad8349 5816f3d98d3069c15d14d747fe277bcb { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor' } C3L-01976.miRNA-Seq.T.hg38 C3L-01976 CCRCC miRNA-Seq tumor CPT0109500006 0e47b09a-d85a-44e4-b5f7-9d199b542f2b_mirnaseq_gdc_realn.bam 282240999 BAM harmonized CPTAC3 60a893cf-3482-497a-b92b-7007e806dcf6 f2c4a8013201aabd3fc83b6e2b27e0cb { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01976.RNA-Seq.chimeric.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 9fb1282f-7eaf-4a7d-b723-e97bb6fde865.rna_seq.chimeric.gdc_realn.bam 37485273 BAM chimeric harmonized CPTAC3 6b19b8f9-2c92-4b41-9f38-500264906c99 9b2d23b219f7a827ff463e5d80104ce2 { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01976.RNA-Seq.chimeric.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 f9c4388c-884b-4510-be24-ab49c692e2d0.rna_seq.chimeric.gdc_realn.bam 72277612 BAM chimeric harmonized CPTAC3 aa4c93f7-f242-4940-900f-2ddfad867f12 cd86a2614d78ef38637800a55637f2d2 { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01976.RNA-Seq.genomic.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 9fb1282f-7eaf-4a7d-b723-e97bb6fde865.rna_seq.genomic.gdc_realn.bam 9213197794 BAM genomic harmonized CPTAC3 7e475fe2-8157-4376-9a17-6d119784e5ce cf815746ef661b1e7a3e619359b0731a { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01976.RNA-Seq.genomic.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 f9c4388c-884b-4510-be24-ab49c692e2d0.rna_seq.genomic.gdc_realn.bam 7882028970 BAM genomic harmonized CPTAC3 91353c4c-c7ae-4617-a122-0fad03d8ee8f 3e6be967c168ff25b3cd13fed7cc8db7 { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01976.RNA-Seq.R1_L006.T C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 171109_UNC31-K00269_0091_BHMFGTBBXX_CCGTCC_S23_L006_R1_001.fastq.gz 3691412699 FASTQ R1_L006 unaligned CPTAC3 b3250e07-0bc6-42c7-a8dd-02fb49cf327f f52874ecf094b15e3cb14f17c4f39317 { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01976.RNA-Seq.R1_L007.A C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 4344531327 FASTQ R1_L007 unaligned CPTAC3 267560c1-339b-41b6-98b4-64fc6f6d3b32 1dce5f8585059c68f9a258fa2ce16ee1 { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01976.RNA-Seq.R2_L006.T C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 171109_UNC31-K00269_0091_BHMFGTBBXX_CCGTCC_S23_L006_R2_001.fastq.gz 4047054751 FASTQ R2_L006 unaligned CPTAC3 f25a7b5e-7268-4eb4-84ae-4692e3c8d1ea a39d6ea2286eddbf62e0318ac8e4053d { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor' } -C3L-01976.RNA-Seq.R2_L007.A C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4730697904 FASTQ R2_L007 unaligned CPTAC3 7a9e9a56-7d15-4694-b96f-7ccd5e6047a7 2078a0b99bf23876074f75dd80aa7369 { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01976.RNA-Seq.transcriptome.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 9fb1282f-7eaf-4a7d-b723-e97bb6fde865.rna_seq.transcriptome.gdc_realn.bam 9938672944 BAM transcriptome harmonized CPTAC3 e5a59310-c004-47a3-adf8-4d3f1245d0b5 2308fc86903ba48ea0975c858f88ef37 { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01976.RNA-Seq.transcriptome.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 f9c4388c-884b-4510-be24-ab49c692e2d0.rna_seq.transcriptome.gdc_realn.bam 8762820605 BAM transcriptome harmonized CPTAC3 fde04279-7eaf-4c73-af4f-7da8436927e4 99a3a18374a1fc57438195949297b1a9 { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01976.RNA-Seq.chimeric.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 d6c91992-e4cf-4a7d-9900-f8ef32af2cf9.rna_seq.chimeric.gdc_realn.bam 37462774 BAM chimeric harmonized CPTAC3 5dd64d81-7997-47e6-a513-e74f33bcc79e 6155515e010059dea8b1263064eadd8c { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01976.RNA-Seq.chimeric.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 d65fca38-6aaa-4b20-8d58-13ebe89c2831.rna_seq.chimeric.gdc_realn.bam 72275246 BAM chimeric harmonized CPTAC3 657baab4-fa64-4c8d-bf19-2ae4a3af5101 484504fcd861568087c19675a4a2b16d { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01976.RNA-Seq.genomic.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 d6c91992-e4cf-4a7d-9900-f8ef32af2cf9.rna_seq.genomic.gdc_realn.bam 9213999713 BAM genomic harmonized CPTAC3 45ced5be-a2ac-422f-a26b-ebbf0ef14207 cecce13600e89aff8e7964c4ac28f327 { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01976.RNA-Seq.genomic.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 d65fca38-6aaa-4b20-8d58-13ebe89c2831.rna_seq.genomic.gdc_realn.bam 7882694965 BAM genomic harmonized CPTAC3 44b9d533-a8bd-4d9b-9be2-adba7c1a6dc3 93a8e82ab3445511a8776dd4c6788b4f { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor' } +C3L-01976.RNA-Seq.R1_L006.T C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 171109_UNC31-K00269_0091_BHMFGTBBXX_CCGTCC_S23_L006_R1_001.fastq.gz 3691412699 FASTQ R1_L006 unaligned CPTAC3 b3250e07-0bc6-42c7-a8dd-02fb49cf327f f52874ecf094b15e3cb14f17c4f39317 { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-01976.RNA-Seq.R1_L007.A C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 4344531327 FASTQ R1_L007 unaligned CPTAC3 267560c1-339b-41b6-98b4-64fc6f6d3b32 1dce5f8585059c68f9a258fa2ce16ee1 { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-01976.RNA-Seq.R2_L006.T C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 171109_UNC31-K00269_0091_BHMFGTBBXX_CCGTCC_S23_L006_R2_001.fastq.gz 4047054751 FASTQ R2_L006 unaligned CPTAC3 f25a7b5e-7268-4eb4-84ae-4692e3c8d1ea a39d6ea2286eddbf62e0318ac8e4053d { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-01976.RNA-Seq.R2_L007.A C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4730697904 FASTQ R2_L007 unaligned CPTAC3 7a9e9a56-7d15-4694-b96f-7ccd5e6047a7 2078a0b99bf23876074f75dd80aa7369 { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-01976.RNA-Seq.transcriptome.A.hg38 C3L-01976 CCRCC RNA-Seq tissue_normal CPT0109530009 d6c91992-e4cf-4a7d-9900-f8ef32af2cf9.rna_seq.transcriptome.gdc_realn.bam 11387371805 BAM transcriptome harmonized CPTAC3 5904465d-07e9-4d4f-a61c-e9ab238000ca 3297fa724515742efc03502dff4874fe { 'aliquot_tag': 'ALQ_f4955d9a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01976.RNA-Seq.transcriptome.T.hg38 C3L-01976 CCRCC RNA-Seq tumor CPT0109500006 d65fca38-6aaa-4b20-8d58-13ebe89c2831.rna_seq.transcriptome.gdc_realn.bam 10021089163 BAM transcriptome harmonized CPTAC3 99e50577-26de-4fe6-828f-deaab4d20227 9465981924449a0c9bce7e047302d71a { 'aliquot_tag': 'ALQ_238a3adb', 'gdc_sample_type': 'Primary Tumor' } C3L-01976.WGS.A C3L-01976 CCRCC WGS tissue_normal CPT0109530006 CPT0109530006.WholeGenome.RP-1303.bam 61506261562 BAM aligned CPTAC3 7c299825-c1cf-49bf-9650-0b3eb9f58f57 9d5e191b85278ec98aa886ff2acfc04d { 'aliquot_tag': 'ALQ_642a400b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01976.WGS.A.hg38 C3L-01976 CCRCC WGS tissue_normal CPT0109530006 efd244f3-df56-42d6-bd3c-5450de8d34d2_wgs_gdc_realn.bam 89284417837 BAM harmonized CPTAC3 43d6f523-0230-49a2-8251-2177d23678c8 e48490c84a586d020c9dca3c003ed8ff { 'aliquot_tag': 'ALQ_642a400b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01976.WGS.N C3L-01976 CCRCC WGS blood_normal CPT0108370002 CPT0108370002.WholeGenome.RP-1303.bam 54539482360 BAM aligned CPTAC3 5d4b7ca8-6f78-4e4e-8d67-da3551f19794 0d1ad833c36be03acf8b3120049af3cf { 'aliquot_tag': 'ALQ_e6e9ca7b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9012,16 +9713,16 @@ C3L-01978.miRNA-Seq.A C3L-01978 CCRCC miRNA-Seq tissue_normal CPT0125660009 1901 C3L-01978.miRNA-Seq.A.hg38 C3L-01978 CCRCC miRNA-Seq tissue_normal CPT0125660009 de604bf7-e7a3-4170-a30f-a7af5cb79e5d_mirnaseq_gdc_realn.bam 221505679 BAM harmonized CPTAC3 1808f412-3e50-488e-b564-f3c3b0cde43b 56382ee3f8f97a67a3ba532f30d6b283 { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01978.miRNA-Seq.T C3L-01978 CCRCC miRNA-Seq tumor CPT0125620010 190108_UNC31-K00269_0176_AHYGLVBBXX_GGCTAC_S11_L004_R1_001.unaln.bam 272069745 BAM unaligned CPTAC3 e78076a7-62a8-4e9f-b780-86dd0c4ee7dc 4bc0767924078b5eaafc110293667972 { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor' } C3L-01978.miRNA-Seq.T.hg38 C3L-01978 CCRCC miRNA-Seq tumor CPT0125620010 142a5f7e-4684-4297-be81-8a9910d8632e_mirnaseq_gdc_realn.bam 305255760 BAM harmonized CPTAC3 40655f76-9397-44b3-b54f-5bbedc49642c f2344f094266f08556c4e6414fb45882 { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor' } -C3L-01978.RNA-Seq.chimeric.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 7e5c1537-fdc5-4cae-9ab6-9844e654ef59.rna_seq.chimeric.gdc_realn.bam 113319862 BAM chimeric harmonized CPTAC3 e46bb3de-c5fa-46ef-9b39-dd75800016fc be0a035de908f641b54a6f1df0f744ac { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01978.RNA-Seq.chimeric.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b8884a9a-ee93-4650-98a8-80f5bc9b0bb1.rna_seq.chimeric.gdc_realn.bam 131845375 BAM chimeric harmonized CPTAC3 9ef653ae-2f1a-474a-af65-05e923b71c9b 46b5801b0f17bc7208cec200be80464d { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor' } -C3L-01978.RNA-Seq.genomic.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 7e5c1537-fdc5-4cae-9ab6-9844e654ef59.rna_seq.genomic.gdc_realn.bam 10056517374 BAM genomic harmonized CPTAC3 ff96bdd6-3826-4376-9804-a67f684a4688 0f209cace07070db1a3dd634e7313fb8 { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01978.RNA-Seq.genomic.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b8884a9a-ee93-4650-98a8-80f5bc9b0bb1.rna_seq.genomic.gdc_realn.bam 8515760551 BAM genomic harmonized CPTAC3 1bddc44f-b13f-4e06-8a18-87905e7c56ff e77ccf40ed05a1878cd309f00cd9614b { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor' } -C3L-01978.RNA-Seq.R1_L001.T C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3819803528 FASTQ R1_L001 unaligned CPTAC3 2b31b66f-409d-46bd-8dbb-b15fac6a8758 9fc76f5f0164e5c83794db8b35d39d59 { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor' } -C3L-01978.RNA-Seq.R1_L007.A C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 190117_UNC31-K00269_0180_AH35VKBBXY_GTCCGC_S17_L007_R1_001.fastq.gz 4460922507 FASTQ R1_L007 unaligned CPTAC3 a2c04b44-bb70-4906-8b11-c4f786a3b3f8 7a979f05a9520bf0f46ee6b9252efac8 { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01978.RNA-Seq.R2_L001.T C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4399810119 FASTQ R2_L001 unaligned CPTAC3 f3b47899-289b-4f3a-9f10-c3c5120bb9b7 91482be9a190429f6f0ebbd8f633f97c { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor' } -C3L-01978.RNA-Seq.R2_L007.A C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 190117_UNC31-K00269_0180_AH35VKBBXY_GTCCGC_S17_L007_R2_001.fastq.gz 4895935748 FASTQ R2_L007 unaligned CPTAC3 38933543-6714-41fb-9689-2cfbb8a1a0ae 66c54ba685e6cc926b0647597c66ff95 { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01978.RNA-Seq.transcriptome.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 7e5c1537-fdc5-4cae-9ab6-9844e654ef59.rna_seq.transcriptome.gdc_realn.bam 9588403744 BAM transcriptome harmonized CPTAC3 996c036a-4447-432a-a00d-365b8d6c32f6 ea3b7d8e650c2e2dc41fe97fe44ddeb1 { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-01978.RNA-Seq.transcriptome.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b8884a9a-ee93-4650-98a8-80f5bc9b0bb1.rna_seq.transcriptome.gdc_realn.bam 8733845135 BAM transcriptome harmonized CPTAC3 f784dcd6-f543-4aa8-96fe-6e0da29496f2 2fb10c4979879f544c9dc8347bcb2165 { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor' } +C3L-01978.RNA-Seq.chimeric.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 cb824391-ce95-4c12-97d8-f46000225e7d.rna_seq.chimeric.gdc_realn.bam 113294334 BAM chimeric harmonized CPTAC3 e94c42e3-5161-4428-8f8d-a60940758216 871c2b680b7ecd29224f391b7f079eba { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01978.RNA-Seq.chimeric.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b1d1f015-1847-49eb-8f18-87d379580056.rna_seq.chimeric.gdc_realn.bam 131803739 BAM chimeric harmonized CPTAC3 92d98c67-0bf6-46bf-9555-3e9591d0747b 851147de18e2cf5868f06254c3c510fa { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor' } +C3L-01978.RNA-Seq.genomic.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 cb824391-ce95-4c12-97d8-f46000225e7d.rna_seq.genomic.gdc_realn.bam 10058073545 BAM genomic harmonized CPTAC3 07f14926-7ba4-4b45-93c9-4d727976932c f784b30ae3e9fca0a489c5541c1c41c9 { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01978.RNA-Seq.genomic.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b1d1f015-1847-49eb-8f18-87d379580056.rna_seq.genomic.gdc_realn.bam 8517179899 BAM genomic harmonized CPTAC3 56f7d745-20aa-4d05-9bb1-5a5b43b7e73a f65ecd8d5cd134e19cf6ea5372bea941 { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor' } +C3L-01978.RNA-Seq.R1_L001.T C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3819803528 FASTQ R1_L001 unaligned CPTAC3 2b31b66f-409d-46bd-8dbb-b15fac6a8758 9fc76f5f0164e5c83794db8b35d39d59 { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-01978.RNA-Seq.R1_L007.A C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 190117_UNC31-K00269_0180_AH35VKBBXY_GTCCGC_S17_L007_R1_001.fastq.gz 4460922507 FASTQ R1_L007 unaligned CPTAC3 a2c04b44-bb70-4906-8b11-c4f786a3b3f8 7a979f05a9520bf0f46ee6b9252efac8 { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-01978.RNA-Seq.R2_L001.T C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4399810119 FASTQ R2_L001 unaligned CPTAC3 f3b47899-289b-4f3a-9f10-c3c5120bb9b7 91482be9a190429f6f0ebbd8f633f97c { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-01978.RNA-Seq.R2_L007.A C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 190117_UNC31-K00269_0180_AH35VKBBXY_GTCCGC_S17_L007_R2_001.fastq.gz 4895935748 FASTQ R2_L007 unaligned CPTAC3 38933543-6714-41fb-9689-2cfbb8a1a0ae 66c54ba685e6cc926b0647597c66ff95 { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-01978.RNA-Seq.transcriptome.A.hg38 C3L-01978 CCRCC RNA-Seq tissue_normal CPT0125660009 cb824391-ce95-4c12-97d8-f46000225e7d.rna_seq.transcriptome.gdc_realn.bam 10978742330 BAM transcriptome harmonized CPTAC3 2d26873c-ecb1-4665-8ea5-0ddd7f03f6bb 9af01096f4f97d03e1b762147fc37ca3 { 'aliquot_tag': 'ALQ_3f64cd4d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-01978.RNA-Seq.transcriptome.T.hg38 C3L-01978 CCRCC RNA-Seq tumor CPT0125620010 b1d1f015-1847-49eb-8f18-87d379580056.rna_seq.transcriptome.gdc_realn.bam 9935084661 BAM transcriptome harmonized CPTAC3 91c336d3-72b6-4b0d-9756-2057bf9c260a d4ca7d01dbfe603fb5eb60b9bc606c0b { 'aliquot_tag': 'ALQ_aa23e268', 'gdc_sample_type': 'Primary Tumor' } C3L-01978.WGS.A C3L-01978 CCRCC WGS tissue_normal CPT0125660006 CPT0125660006.WholeGenome.RP-1303.bam 58720387517 BAM aligned CPTAC3 274d285c-e32e-4527-91e1-7f356cec8e1e 5967bc9dfa0acfdbdc1b4573dfdf325d { 'aliquot_tag': 'ALQ_afdbd0dc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01978.WGS.A.hg38 C3L-01978 CCRCC WGS tissue_normal CPT0125660006 35b30ca5-34d6-493c-b5e4-732210bd3650_wgs_gdc_realn.bam 83589696983 BAM harmonized CPTAC3 3453c2e7-e52f-40d4-a11c-e11bb52cd27c dfa0fbf79c3e729d70f36014623c61df { 'aliquot_tag': 'ALQ_afdbd0dc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-01978.WGS.N C3L-01978 CCRCC WGS blood_normal CPT0124260002 CPT0124260002.WholeGenome.RP-1303.bam 61569685388 BAM aligned CPTAC3 4adc358c-5dd2-4d67-a2dc-cf6cb5920d87 34d3cddc2709bc5e44124692247b71a7 { 'aliquot_tag': 'ALQ_95505d67', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9039,9 +9740,9 @@ C3L-02041.MethArray.Red.T C3L-02041 GBM Methylation Array tumor CPT0125510009 20 C3L-02041.miRNA-Seq.T C3L-02041 GBM miRNA-Seq tumor CPT0125510006 181108_UNC31-K00269_0162_AH255GBBXY_ATGTCA_S39_L004_R1_001.unaln.bam 265035362 BAM unaligned CPTAC3 e5f84412-2221-4c91-bcca-a7e10b553632 aea1ffffb6d3cd25402b3a9247d94a58 { 'aliquot_tag': 'ALQ_9b6f7e62', 'gdc_sample_type': 'Primary Tumor' } C3L-02041.miRNA-Seq.T.hg38 C3L-02041 GBM miRNA-Seq tumor CPT0125510006 4a05c2ea-890d-45e3-8dce-4be90e5d3022_mirnaseq_gdc_realn.bam 298015066 BAM harmonized CPTAC3 3b853de2-35ca-4b89-ab96-be5b7124109a ae8b05eb1a785ce53bf5ce3b646c5366 { 'aliquot_tag': 'ALQ_9b6f7e62', 'gdc_sample_type': 'Primary Tumor' } C3L-02041.RNA-Seq.chimeric.T.hg38 C3L-02041 GBM RNA-Seq tumor CPT0125510006 a93d22ba-5cfa-4359-ae53-3309ced4e12a.rna_seq.chimeric.gdc_realn.bam 48349366 BAM chimeric harmonized CPTAC3 4a6a0511-42fc-42a4-a02b-90874930631f 9c5d87cb973d01e82c1177c697addd82 { 'aliquot_tag': 'ALQ_9b6f7e62', 'gdc_sample_type': 'Primary Tumor' } -C3L-02041.RNA-Seq.genomic.T.hg38 C3L-02041 GBM RNA-Seq tumor CPT0125510006 a93d22ba-5cfa-4359-ae53-3309ced4e12a.rna_seq.genomic.gdc_realn.bam 8188525949 BAM genomic harmonized CPTAC3 db24447e-e719-494c-a823-ff2027610767 148f54a129fe4071efc457fada973f3f { 'aliquot_tag': 'ALQ_9b6f7e62', 'gdc_sample_type': 'Primary Tumor' } -C3L-02041.RNA-Seq.R1_L005.T C3L-02041 GBM RNA-Seq tumor CPT0125510006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R1_001.fastq.gz 3831582154 FASTQ R1_L005 unaligned CPTAC3 1da7dff2-8bad-4a10-9b89-de71e20efb67 a22616c520d16f04a41ffcb4de597709 { 'aliquot_tag': 'ALQ_9b6f7e62', 'gdc_sample_type': 'Primary Tumor' } -C3L-02041.RNA-Seq.R2_L005.T C3L-02041 GBM RNA-Seq tumor CPT0125510006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R2_001.fastq.gz 4207462558 FASTQ R2_L005 unaligned CPTAC3 5bb2b2d1-b7a2-4028-84bd-0b8603028e4b be84a670ab034caed2ea0452c546e5ec { 'aliquot_tag': 'ALQ_9b6f7e62', 'gdc_sample_type': 'Primary Tumor' } +C3L-02041.RNA-Seq.genomic.T.hg38 C3L-02041 GBM RNA-Seq tumor CPT0125510006 a93d22ba-5cfa-4359-ae53-3309ced4e12a.rna_seq.genomic.gdc_realn.bam 8188525949 BAM genomic harmonized CPTAC3 c4d214c0-723f-4355-b575-c1aeb2f1412f 148f54a129fe4071efc457fada973f3f { 'aliquot_tag': 'ALQ_9b6f7e62', 'gdc_sample_type': 'Primary Tumor' } +C3L-02041.RNA-Seq.R1_L005.T C3L-02041 GBM RNA-Seq tumor CPT0125510006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R1_001.fastq.gz 3831582154 FASTQ R1_L005 unaligned CPTAC3 1da7dff2-8bad-4a10-9b89-de71e20efb67 a22616c520d16f04a41ffcb4de597709 { 'aliquot_tag': 'ALQ_9b6f7e62', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02041.RNA-Seq.R2_L005.T C3L-02041 GBM RNA-Seq tumor CPT0125510006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATGTCA_S17_L005_R2_001.fastq.gz 4207462558 FASTQ R2_L005 unaligned CPTAC3 5bb2b2d1-b7a2-4028-84bd-0b8603028e4b be84a670ab034caed2ea0452c546e5ec { 'aliquot_tag': 'ALQ_9b6f7e62', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-02041.RNA-Seq.transcriptome.T.hg38 C3L-02041 GBM RNA-Seq tumor CPT0125510006 a93d22ba-5cfa-4359-ae53-3309ced4e12a.rna_seq.transcriptome.gdc_realn.bam 8390028143 BAM transcriptome harmonized CPTAC3 6a87434c-8d6a-4d34-b925-416d8800d219 a717b85d45fae4eea156e54f82299d71 { 'aliquot_tag': 'ALQ_9b6f7e62', 'gdc_sample_type': 'Primary Tumor' } C3L-02041.WGS.N C3L-02041 GBM WGS blood_normal CPT0124240002 CPT0124240002.WholeGenome.RP-1303.bam 56509025370 BAM aligned CPTAC3 985fcf02-2005-4781-afb7-fbe2e5c0ed20 e595372c2461e93aeed76ead0f945b8b { 'aliquot_tag': 'ALQ_ef900e07', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02041.WGS.N.hg38 C3L-02041 GBM WGS blood_normal CPT0124240002 413408c0-fdd9-4e15-85da-132bfe999cb2_wgs_gdc_realn.bam 82504136941 BAM harmonized CPTAC3 5e4208c9-c462-4b08-8e72-a5842dae8f86 e459941c3ce01efe495bbb498cc36efa { 'aliquot_tag': 'ALQ_ef900e07', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9056,9 +9757,9 @@ C3L-02109.MethArray.Red.T C3L-02109 PDA Methylation Array tumor CPT0109010010 20 C3L-02109.miRNA-Seq.T C3L-02109 PDA miRNA-Seq tumor CPT0109010007 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L004_R1_001.unaln.bam 220206075 BAM unaligned CPTAC3 714a8d2c-00e4-41f2-b7ab-97e83963f5e4 b5e95c879717e9cf666c94d8a6c1f66a { 'aliquot_tag': 'ALQ_3920b24e', 'gdc_sample_type': 'Primary Tumor' } C3L-02109.miRNA-Seq.T.hg38 C3L-02109 PDA miRNA-Seq tumor CPT0109010007 36fd5dcf-c8e1-4a17-88fd-d0f54b250cf9_mirnaseq_gdc_realn.bam 247619653 BAM harmonized CPTAC3 e54bcfa0-9eb7-4075-9fc4-ea86be5a1b72 64361a773ca51c7d71653d50fb2e0529 { 'aliquot_tag': 'ALQ_3920b24e', 'gdc_sample_type': 'Primary Tumor' } C3L-02109.RNA-Seq.chimeric.T.hg38 C3L-02109 PDA RNA-Seq tumor CPT0109010007 59677ed7-b1dd-4c55-8211-77d65053366c.rna_seq.chimeric.gdc_realn.bam 45036488 BAM chimeric harmonized CPTAC3 9a4cfce6-d21f-4f31-a075-dbf068e104d1 1c24dc9d7435f918224f22d22b90542c { 'aliquot_tag': 'ALQ_3920b24e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02109.RNA-Seq.genomic.T.hg38 C3L-02109 PDA RNA-Seq tumor CPT0109010007 59677ed7-b1dd-4c55-8211-77d65053366c.rna_seq.genomic.gdc_realn.bam 7204774029 BAM genomic harmonized CPTAC3 85db935f-f6f5-4f11-859a-6ef3b100c74b 72bc09f145f91931f9c6ed4080943c84 { 'aliquot_tag': 'ALQ_3920b24e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02109.RNA-Seq.R1_L006.T C3L-02109 PDA RNA-Seq tumor CPT0109010007 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R1_001.fastq.gz 3150820705 FASTQ R1_L006 unaligned CPTAC3 0143fe73-deea-484e-8fd5-6bdf9fd73640 d8156845d50e4fe92caa41161ec526b1 { 'aliquot_tag': 'ALQ_3920b24e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02109.RNA-Seq.R2_L006.T C3L-02109 PDA RNA-Seq tumor CPT0109010007 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R2_001.fastq.gz 3461729862 FASTQ R2_L006 unaligned CPTAC3 02819eb9-c422-4438-a0b7-44bbfbb1bec0 2cc7acf9123b68eaa1c05690fdff3928 { 'aliquot_tag': 'ALQ_3920b24e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02109.RNA-Seq.genomic.T.hg38 C3L-02109 PDA RNA-Seq tumor CPT0109010007 59677ed7-b1dd-4c55-8211-77d65053366c.rna_seq.genomic.gdc_realn.bam 7204774029 BAM genomic harmonized CPTAC3 e3bd1a3a-62c0-4733-94b3-4f703d09793f 72bc09f145f91931f9c6ed4080943c84 { 'aliquot_tag': 'ALQ_3920b24e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02109.RNA-Seq.R1_L006.T C3L-02109 PDA RNA-Seq tumor CPT0109010007 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R1_001.fastq.gz 3150820705 FASTQ R1_L006 unaligned CPTAC3 0143fe73-deea-484e-8fd5-6bdf9fd73640 d8156845d50e4fe92caa41161ec526b1 { 'aliquot_tag': 'ALQ_3920b24e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02109.RNA-Seq.R2_L006.T C3L-02109 PDA RNA-Seq tumor CPT0109010007 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L006_R2_001.fastq.gz 3461729862 FASTQ R2_L006 unaligned CPTAC3 02819eb9-c422-4438-a0b7-44bbfbb1bec0 2cc7acf9123b68eaa1c05690fdff3928 { 'aliquot_tag': 'ALQ_3920b24e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02109.RNA-Seq.transcriptome.T.hg38 C3L-02109 PDA RNA-Seq tumor CPT0109010007 59677ed7-b1dd-4c55-8211-77d65053366c.rna_seq.transcriptome.gdc_realn.bam 8329425662 BAM transcriptome harmonized CPTAC3 a1a6b0bb-0dcc-466c-878f-bbf904d8b9d4 0f73ab853aec13006f1f8fdd0842ee5e { 'aliquot_tag': 'ALQ_3920b24e', 'gdc_sample_type': 'Primary Tumor' } C3L-02109.Targeted.T C3L-02109 PDA Targeted Sequencing tumor CPT0109010010_1 CPT0109010010_1.CustomSelection.RP-1303.PDO-18786.bam 4426058308 BAM aligned CPTAC3 4c280297-e9c2-42ae-9f98-c6e6d91a53a5 6351fd8a1e97bb31b88defe1d76dbda3 { 'aliquot_tag': 'ALQ_db42abb5', 'gdc_sample_type': 'Primary Tumor' } C3L-02109.Targeted.T.hg38 C3L-02109 PDA Targeted Sequencing tumor CPT0109010010_1 f3517079-507e-475a-9fd1-b355d59be341_targetedsequencing_gdc_realn.bam 6203999862 BAM harmonized CPTAC3 9dee973f-9a14-4a81-942d-259632ee75cc ac848ec9d99ed3d2d8eea18f3f653f68 { 'aliquot_tag': 'ALQ_db42abb5', 'gdc_sample_type': 'Primary Tumor' } @@ -9082,12 +9783,12 @@ C3L-02112.miRNA-Seq.T C3L-02112 PDA miRNA-Seq tumor CPT0124410010 181108_UNC31-K C3L-02112.miRNA-Seq.T.hg38 C3L-02112 PDA miRNA-Seq tumor CPT0124410010 811ef88c-9863-4dc9-8e02-4f229ef9f96f_mirnaseq_gdc_realn.bam 235270543 BAM harmonized CPTAC3 dc021f94-7b2d-47af-a1d2-3c288f548229 0d38244f88317c6553013b9296e83fb6 { 'aliquot_tag': 'ALQ_63c3207', 'gdc_sample_type': 'Primary Tumor' } C3L-02112.RNA-Seq.chimeric.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 0202b658-d94d-42a1-8e55-8e7379f589fd.rna_seq.chimeric.gdc_realn.bam 112253047 BAM chimeric harmonized CPTAC3 20aac09e-d950-4f10-bc3a-1dc38be8c611 91a1d05c38250e4c8d5f3b6f7e6db540 { 'aliquot_tag': 'ALQ_6b3cd814', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02112.RNA-Seq.chimeric.T.hg38 C3L-02112 PDA RNA-Seq tumor CPT0124410010 e86e3324-7e76-4e20-bef6-f946dc93e3ec.rna_seq.chimeric.gdc_realn.bam 99870007 BAM chimeric harmonized CPTAC3 578ba582-18de-4278-a9ca-659c9c32e1c7 902164d47b0353a84ce6b8199cbe94a6 { 'aliquot_tag': 'ALQ_63c3207', 'gdc_sample_type': 'Primary Tumor' } -C3L-02112.RNA-Seq.genomic.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 0202b658-d94d-42a1-8e55-8e7379f589fd.rna_seq.genomic.gdc_realn.bam 9543308198 BAM genomic harmonized CPTAC3 a7e31d81-86af-434a-af3b-6ab5a8b86971 b2b6733ecc74480142bd3648f5bedce5 { 'aliquot_tag': 'ALQ_6b3cd814', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02112.RNA-Seq.genomic.T.hg38 C3L-02112 PDA RNA-Seq tumor CPT0124410010 e86e3324-7e76-4e20-bef6-f946dc93e3ec.rna_seq.genomic.gdc_realn.bam 9669088708 BAM genomic harmonized CPTAC3 cf40aea6-3fa3-42cc-879f-48ae9388a17a d6a83ec6df4456dc3fb5960c557491b7 { 'aliquot_tag': 'ALQ_63c3207', 'gdc_sample_type': 'Primary Tumor' } -C3L-02112.RNA-Seq.R1_L002.T C3L-02112 PDA RNA-Seq tumor CPT0124410010 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L002_R1_001.fastq.gz 4221573662 FASTQ R1_L002 unaligned CPTAC3 3450378b-d704-4637-b48b-acf54fd1485b 9ff705383fafc759ded658b2cc5d9af3 { 'aliquot_tag': 'ALQ_63c3207', 'gdc_sample_type': 'Primary Tumor' } -C3L-02112.RNA-Seq.R1_L005.A C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 180516_UNC31-K00269_0129_AHTWLFBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 4315806975 FASTQ R1_L005 unaligned CPTAC3 574ea695-bb46-4fc7-9680-7ffd773b2f72 24b98ae5234da1298fe1b74a838f0b6c { 'aliquot_tag': 'ALQ_6b3cd814', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02112.RNA-Seq.R2_L002.T C3L-02112 PDA RNA-Seq tumor CPT0124410010 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L002_R2_001.fastq.gz 4746498476 FASTQ R2_L002 unaligned CPTAC3 2d971539-16b6-4ea0-8290-7af54175280c c4123b5fc102de1fec32cda07076df38 { 'aliquot_tag': 'ALQ_63c3207', 'gdc_sample_type': 'Primary Tumor' } -C3L-02112.RNA-Seq.R2_L005.A C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 180516_UNC31-K00269_0129_AHTWLFBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 4552166247 FASTQ R2_L005 unaligned CPTAC3 f612c15d-b0a2-48aa-8ed7-af9e12408f94 b2ebe85adc4da144678d7a3bf5fbb923 { 'aliquot_tag': 'ALQ_6b3cd814', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02112.RNA-Seq.genomic.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 0202b658-d94d-42a1-8e55-8e7379f589fd.rna_seq.genomic.gdc_realn.bam 9543308198 BAM genomic harmonized CPTAC3 7f2da68c-f986-46f5-9c89-d435bae29878 b2b6733ecc74480142bd3648f5bedce5 { 'aliquot_tag': 'ALQ_6b3cd814', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02112.RNA-Seq.genomic.T.hg38 C3L-02112 PDA RNA-Seq tumor CPT0124410010 e86e3324-7e76-4e20-bef6-f946dc93e3ec.rna_seq.genomic.gdc_realn.bam 9669088708 BAM genomic harmonized CPTAC3 2c2c40e8-d8b7-4922-8c32-d50a6924d099 d6a83ec6df4456dc3fb5960c557491b7 { 'aliquot_tag': 'ALQ_63c3207', 'gdc_sample_type': 'Primary Tumor' } +C3L-02112.RNA-Seq.R1_L002.T C3L-02112 PDA RNA-Seq tumor CPT0124410010 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L002_R1_001.fastq.gz 4221573662 FASTQ R1_L002 unaligned CPTAC3 3450378b-d704-4637-b48b-acf54fd1485b 9ff705383fafc759ded658b2cc5d9af3 { 'aliquot_tag': 'ALQ_63c3207', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02112.RNA-Seq.R1_L005.A C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 180516_UNC31-K00269_0129_AHTWLFBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 4315806975 FASTQ R1_L005 unaligned CPTAC3 574ea695-bb46-4fc7-9680-7ffd773b2f72 24b98ae5234da1298fe1b74a838f0b6c { 'aliquot_tag': 'ALQ_6b3cd814', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02112.RNA-Seq.R2_L002.T C3L-02112 PDA RNA-Seq tumor CPT0124410010 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L002_R2_001.fastq.gz 4746498476 FASTQ R2_L002 unaligned CPTAC3 2d971539-16b6-4ea0-8290-7af54175280c c4123b5fc102de1fec32cda07076df38 { 'aliquot_tag': 'ALQ_63c3207', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-02112.RNA-Seq.R2_L005.A C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 180516_UNC31-K00269_0129_AHTWLFBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 4552166247 FASTQ R2_L005 unaligned CPTAC3 f612c15d-b0a2-48aa-8ed7-af9e12408f94 b2ebe85adc4da144678d7a3bf5fbb923 { 'aliquot_tag': 'ALQ_6b3cd814', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-02112.RNA-Seq.transcriptome.A.hg38 C3L-02112 PDA RNA-Seq tissue_normal CPT0124430008 0202b658-d94d-42a1-8e55-8e7379f589fd.rna_seq.transcriptome.gdc_realn.bam 11430455793 BAM transcriptome harmonized CPTAC3 adce7cb8-a6c3-4546-aebb-3ff8143de5a0 56324553978006e4d19aac73960c5214 { 'aliquot_tag': 'ALQ_6b3cd814', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02112.RNA-Seq.transcriptome.T.hg38 C3L-02112 PDA RNA-Seq tumor CPT0124410010 e86e3324-7e76-4e20-bef6-f946dc93e3ec.rna_seq.transcriptome.gdc_realn.bam 11871501094 BAM transcriptome harmonized CPTAC3 f111b1ce-7b2d-47c8-acf8-ce30d8153410 7d4fc6342c5a7d41d906997a9d245875 { 'aliquot_tag': 'ALQ_63c3207', 'gdc_sample_type': 'Primary Tumor' } C3L-02112.Targeted.T C3L-02112 PDA Targeted Sequencing tumor CPT0124410007_1 CPT0124410007_1.CustomSelection.RP-1303.PDO-18786.bam 5456931630 BAM aligned CPTAC3 ef77fe0e-d225-4af8-8388-7cfa9219301a afcca643a40c9237446821074084fa32 { 'aliquot_tag': 'ALQ_1741e3c5', 'gdc_sample_type': 'Primary Tumor' } @@ -9113,9 +9814,9 @@ C3L-02115.MethArray.Red.T C3L-02115 PDA Methylation Array tumor CPT0109110012 20 C3L-02115.miRNA-Seq.T C3L-02115 PDA miRNA-Seq tumor CPT0109110007 181108_UNC31-K00269_0162_AH255GBBXY_TAGCTT_S34_L004_R1_001.unaln.bam 251095764 BAM unaligned CPTAC3 5c2de421-27da-4b6f-b5f1-e9d6591a75f5 118db2bdaa48372566e1d94101a37e13 { 'aliquot_tag': 'ALQ_f27c61eb', 'gdc_sample_type': 'Primary Tumor' } C3L-02115.miRNA-Seq.T.hg38 C3L-02115 PDA miRNA-Seq tumor CPT0109110007 9036480e-0b70-4225-9958-2cd4b8047daa_mirnaseq_gdc_realn.bam 277355365 BAM harmonized CPTAC3 8bc99a91-dc76-4f7f-bbbd-78b3e40b0fbf 44bbfb11777b33efabf33edd54652b7c { 'aliquot_tag': 'ALQ_f27c61eb', 'gdc_sample_type': 'Primary Tumor' } C3L-02115.RNA-Seq.chimeric.T.hg38 C3L-02115 PDA RNA-Seq tumor CPT0109110007 8845e9dd-a4f9-4f31-bd74-a792af1b7649.rna_seq.chimeric.gdc_realn.bam 34660769 BAM chimeric harmonized CPTAC3 2b7412fb-ef42-4102-bc41-f116c5e70167 0607dbe1d682c5a2ae5ec7030ff8e106 { 'aliquot_tag': 'ALQ_f27c61eb', 'gdc_sample_type': 'Primary Tumor' } -C3L-02115.RNA-Seq.genomic.T.hg38 C3L-02115 PDA RNA-Seq tumor CPT0109110007 8845e9dd-a4f9-4f31-bd74-a792af1b7649.rna_seq.genomic.gdc_realn.bam 10904557177 BAM genomic harmonized CPTAC3 ea3f06d2-1faa-46a7-90e1-aa860f36dece 8d6017c23fccb5c6707e4129d351d4ed { 'aliquot_tag': 'ALQ_f27c61eb', 'gdc_sample_type': 'Primary Tumor' } -C3L-02115.RNA-Seq.R1_L006.T C3L-02115 PDA RNA-Seq tumor CPT0109110007 180508_UNC31-K00269_0128_BHTY7KBBXX_TAGCTT_S22_L006_R1_001.fastq.gz 4698507359 FASTQ R1_L006 unaligned CPTAC3 ed7a42f9-50e2-4d06-a6e5-beab067a59ea 7e5a67e118ae2fd4b85ea6c0df02f295 { 'aliquot_tag': 'ALQ_f27c61eb', 'gdc_sample_type': 'Primary Tumor' } -C3L-02115.RNA-Seq.R2_L006.T C3L-02115 PDA RNA-Seq tumor CPT0109110007 180508_UNC31-K00269_0128_BHTY7KBBXX_TAGCTT_S22_L006_R2_001.fastq.gz 5150077127 FASTQ R2_L006 unaligned CPTAC3 b0b93f1a-895c-4d8d-884f-0dbc09f12d23 a785ac4f5b3f7f80df99d922e12581bb { 'aliquot_tag': 'ALQ_f27c61eb', 'gdc_sample_type': 'Primary Tumor' } +C3L-02115.RNA-Seq.genomic.T.hg38 C3L-02115 PDA RNA-Seq tumor CPT0109110007 8845e9dd-a4f9-4f31-bd74-a792af1b7649.rna_seq.genomic.gdc_realn.bam 10904557177 BAM genomic harmonized CPTAC3 54353d74-983f-4983-a9b5-d202935cd102 8d6017c23fccb5c6707e4129d351d4ed { 'aliquot_tag': 'ALQ_f27c61eb', 'gdc_sample_type': 'Primary Tumor' } +C3L-02115.RNA-Seq.R1_L006.T C3L-02115 PDA RNA-Seq tumor CPT0109110007 180508_UNC31-K00269_0128_BHTY7KBBXX_TAGCTT_S22_L006_R1_001.fastq.gz 4698507359 FASTQ R1_L006 unaligned CPTAC3 ed7a42f9-50e2-4d06-a6e5-beab067a59ea 7e5a67e118ae2fd4b85ea6c0df02f295 { 'aliquot_tag': 'ALQ_f27c61eb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02115.RNA-Seq.R2_L006.T C3L-02115 PDA RNA-Seq tumor CPT0109110007 180508_UNC31-K00269_0128_BHTY7KBBXX_TAGCTT_S22_L006_R2_001.fastq.gz 5150077127 FASTQ R2_L006 unaligned CPTAC3 b0b93f1a-895c-4d8d-884f-0dbc09f12d23 a785ac4f5b3f7f80df99d922e12581bb { 'aliquot_tag': 'ALQ_f27c61eb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02115.RNA-Seq.transcriptome.T.hg38 C3L-02115 PDA RNA-Seq tumor CPT0109110007 8845e9dd-a4f9-4f31-bd74-a792af1b7649.rna_seq.transcriptome.gdc_realn.bam 14649203886 BAM transcriptome harmonized CPTAC3 d19666b4-455f-4ea7-b25c-fd2eaccf0afd fe339709116cd1d6d98b7e4d27105be5 { 'aliquot_tag': 'ALQ_f27c61eb', 'gdc_sample_type': 'Primary Tumor' } C3L-02115.WGS.A C3L-02115 PDA WGS tissue_normal CPT0109130006 CPT0109130006.WholeGenome.RP-1303.bam 54336516730 BAM aligned CPTAC3 09f9358c-b391-4d57-9d75-ed5f01740355 f13c38945f66dc1509e1fd1492796d8e { 'aliquot_tag': 'ALQ_ffbb021d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02115.WGS.A.hg38 C3L-02115 PDA WGS tissue_normal CPT0109130006 2bec91ff-e669-4703-be26-6b2666ec0e5b_wgs_gdc_realn.bam 80297670525 BAM harmonized CPTAC3 6d55db3e-eac1-4349-b6c7-277469bec1fc e6534eef59139bd9a3531768fda8953c { 'aliquot_tag': 'ALQ_ffbb021d', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -9138,9 +9839,9 @@ C3L-02116.MethArray.Red.T C3L-02116 PDA Methylation Array tumor CPT0109200010 20 C3L-02116.miRNA-Seq.T C3L-02116 PDA miRNA-Seq tumor CPT0109200007 181108_UNC31-K00269_0162_AH255GBBXY_GGCTAC_S35_L004_R1_001.unaln.bam 262528202 BAM unaligned CPTAC3 fe76ebe1-37c2-48f7-acc5-14005a284cec 097dd20b62cd83cc7d6d9620b56fb3cf { 'aliquot_tag': 'ALQ_49883af5', 'gdc_sample_type': 'Primary Tumor' } C3L-02116.miRNA-Seq.T.hg38 C3L-02116 PDA miRNA-Seq tumor CPT0109200007 5fffd144-574e-454e-abe3-b73e2514c048_mirnaseq_gdc_realn.bam 289437655 BAM harmonized CPTAC3 fd170de7-b55a-4655-a6dc-3917a689be41 c288ad3b5f66e5b071aca4c8cba61780 { 'aliquot_tag': 'ALQ_49883af5', 'gdc_sample_type': 'Primary Tumor' } C3L-02116.RNA-Seq.chimeric.T.hg38 C3L-02116 PDA RNA-Seq tumor CPT0109200007 bbb45804-62bf-494b-8267-8c6f4e725638.rna_seq.chimeric.gdc_realn.bam 82575725 BAM chimeric harmonized CPTAC3 100cb736-0d25-4eb9-9e9a-149a6f93506d 4b5bf1c942ee7dc30a3597df190a0985 { 'aliquot_tag': 'ALQ_49883af5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02116.RNA-Seq.genomic.T.hg38 C3L-02116 PDA RNA-Seq tumor CPT0109200007 bbb45804-62bf-494b-8267-8c6f4e725638.rna_seq.genomic.gdc_realn.bam 10053463791 BAM genomic harmonized CPTAC3 eb2035e0-7aeb-420d-8a25-0f94ca80bce3 010d10bae578eba36319447f3a67ee05 { 'aliquot_tag': 'ALQ_49883af5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02116.RNA-Seq.R1_L006.T C3L-02116 PDA RNA-Seq tumor CPT0109200007 180508_UNC31-K00269_0128_BHTY7KBBXX_GGCTAC_S21_L006_R1_001.fastq.gz 4382020124 FASTQ R1_L006 unaligned CPTAC3 1640e2fc-33d7-48a9-921b-17f243d88846 c523c8435df9de0b9ba2b115f403bc39 { 'aliquot_tag': 'ALQ_49883af5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02116.RNA-Seq.R2_L006.T C3L-02116 PDA RNA-Seq tumor CPT0109200007 180508_UNC31-K00269_0128_BHTY7KBBXX_GGCTAC_S21_L006_R2_001.fastq.gz 4996451746 FASTQ R2_L006 unaligned CPTAC3 163f8210-0192-4ab8-90d7-26998a55b7f1 682c53cfde6187933ae30c61d4692562 { 'aliquot_tag': 'ALQ_49883af5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02116.RNA-Seq.genomic.T.hg38 C3L-02116 PDA RNA-Seq tumor CPT0109200007 bbb45804-62bf-494b-8267-8c6f4e725638.rna_seq.genomic.gdc_realn.bam 10053463791 BAM genomic harmonized CPTAC3 32a85492-7c1b-4ee8-b15b-5ee057c2b61e 010d10bae578eba36319447f3a67ee05 { 'aliquot_tag': 'ALQ_49883af5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02116.RNA-Seq.R1_L006.T C3L-02116 PDA RNA-Seq tumor CPT0109200007 180508_UNC31-K00269_0128_BHTY7KBBXX_GGCTAC_S21_L006_R1_001.fastq.gz 4382020124 FASTQ R1_L006 unaligned CPTAC3 1640e2fc-33d7-48a9-921b-17f243d88846 c523c8435df9de0b9ba2b115f403bc39 { 'aliquot_tag': 'ALQ_49883af5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02116.RNA-Seq.R2_L006.T C3L-02116 PDA RNA-Seq tumor CPT0109200007 180508_UNC31-K00269_0128_BHTY7KBBXX_GGCTAC_S21_L006_R2_001.fastq.gz 4996451746 FASTQ R2_L006 unaligned CPTAC3 163f8210-0192-4ab8-90d7-26998a55b7f1 682c53cfde6187933ae30c61d4692562 { 'aliquot_tag': 'ALQ_49883af5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02116.RNA-Seq.transcriptome.T.hg38 C3L-02116 PDA RNA-Seq tumor CPT0109200007 bbb45804-62bf-494b-8267-8c6f4e725638.rna_seq.transcriptome.gdc_realn.bam 11435911118 BAM transcriptome harmonized CPTAC3 9fbac401-480c-4466-9a28-7fbba95cee62 85835dc8ba0aab73c87ad093d5990e65 { 'aliquot_tag': 'ALQ_49883af5', 'gdc_sample_type': 'Primary Tumor' } C3L-02116.WGS.A C3L-02116 PDA WGS tissue_normal CPT0109230006 CPT0109230006.WholeGenome.RP-1303.bam 59609816462 BAM aligned CPTAC3 16834d19-39a1-47cd-a09e-f5599bb8584a e290fc0aba24dde5240df4a2af8fc408 { 'aliquot_tag': 'ALQ_792f70b3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02116.WGS.A.hg38 C3L-02116 PDA WGS tissue_normal CPT0109230006 03fa49d8-dd1c-4f64-b093-9a49407a4985_wgs_gdc_realn.bam 88041679732 BAM harmonized CPTAC3 743d77d9-287c-4bb1-b2bf-0cfd6d85da4b 4992a827712240c07d1b4e3c97d9b382 { 'aliquot_tag': 'ALQ_792f70b3', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -9161,9 +9862,9 @@ C3L-02118.MethArray.Red.T C3L-02118 PDA Methylation Array tumor CPT0109300010 20 C3L-02118.miRNA-Seq.T C3L-02118 PDA miRNA-Seq tumor CPT0109300007 181108_UNC31-K00269_0162_AH255GBBXY_CTTGTA_S36_L004_R1_001.unaln.bam 297335988 BAM unaligned CPTAC3 68eb480b-6427-48c7-844a-3bf76e003342 da72a0c3f86d33e7d4755c50df81531e { 'aliquot_tag': 'ALQ_82d4e950', 'gdc_sample_type': 'Primary Tumor' } C3L-02118.miRNA-Seq.T.hg38 C3L-02118 PDA miRNA-Seq tumor CPT0109300007 50b67588-62f4-42e0-a9b4-fcd672ad7466_mirnaseq_gdc_realn.bam 329588832 BAM harmonized CPTAC3 d4aeb1e3-a3b3-4098-9fe2-e2dbe311aa5c 8ce58c37c7a580b05e59cc0a56967ed0 { 'aliquot_tag': 'ALQ_82d4e950', 'gdc_sample_type': 'Primary Tumor' } C3L-02118.RNA-Seq.chimeric.T.hg38 C3L-02118 PDA RNA-Seq tumor CPT0109300007 eea03a92-14e6-4fcd-b87f-6ade065e3528.rna_seq.chimeric.gdc_realn.bam 48433028 BAM chimeric harmonized CPTAC3 628f3358-0d1b-4e84-b0de-d74d3403f87f d7877376b966c9f0406882b93f33c8bb { 'aliquot_tag': 'ALQ_82d4e950', 'gdc_sample_type': 'Primary Tumor' } -C3L-02118.RNA-Seq.genomic.T.hg38 C3L-02118 PDA RNA-Seq tumor CPT0109300007 eea03a92-14e6-4fcd-b87f-6ade065e3528.rna_seq.genomic.gdc_realn.bam 8343084789 BAM genomic harmonized CPTAC3 fb063921-2156-4dc7-9c30-1da7c09b17ed 2579fe89f93c5d69aa5b31148f82437e { 'aliquot_tag': 'ALQ_82d4e950', 'gdc_sample_type': 'Primary Tumor' } -C3L-02118.RNA-Seq.R1_L005.T C3L-02118 PDA RNA-Seq tumor CPT0109300007 180508_UNC31-K00269_0128_BHTY7KBBXX_CTTGTA_S19_L005_R1_001.fastq.gz 3950659348 FASTQ R1_L005 unaligned CPTAC3 e4e8ef9b-f4c0-417a-9c0f-838050aa29e2 263b3a753011eb458451edd1969f2113 { 'aliquot_tag': 'ALQ_82d4e950', 'gdc_sample_type': 'Primary Tumor' } -C3L-02118.RNA-Seq.R2_L005.T C3L-02118 PDA RNA-Seq tumor CPT0109300007 180508_UNC31-K00269_0128_BHTY7KBBXX_CTTGTA_S19_L005_R2_001.fastq.gz 4291714218 FASTQ R2_L005 unaligned CPTAC3 ea082c2d-babd-4dbb-8a36-4d8aa6ed65e7 da4fe6c7c2ee00e7df2bb3def5d54181 { 'aliquot_tag': 'ALQ_82d4e950', 'gdc_sample_type': 'Primary Tumor' } +C3L-02118.RNA-Seq.genomic.T.hg38 C3L-02118 PDA RNA-Seq tumor CPT0109300007 eea03a92-14e6-4fcd-b87f-6ade065e3528.rna_seq.genomic.gdc_realn.bam 8343084789 BAM genomic harmonized CPTAC3 07d8def6-ca76-4062-93eb-1b751939fa06 2579fe89f93c5d69aa5b31148f82437e { 'aliquot_tag': 'ALQ_82d4e950', 'gdc_sample_type': 'Primary Tumor' } +C3L-02118.RNA-Seq.R1_L005.T C3L-02118 PDA RNA-Seq tumor CPT0109300007 180508_UNC31-K00269_0128_BHTY7KBBXX_CTTGTA_S19_L005_R1_001.fastq.gz 3950659348 FASTQ R1_L005 unaligned CPTAC3 e4e8ef9b-f4c0-417a-9c0f-838050aa29e2 263b3a753011eb458451edd1969f2113 { 'aliquot_tag': 'ALQ_82d4e950', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02118.RNA-Seq.R2_L005.T C3L-02118 PDA RNA-Seq tumor CPT0109300007 180508_UNC31-K00269_0128_BHTY7KBBXX_CTTGTA_S19_L005_R2_001.fastq.gz 4291714218 FASTQ R2_L005 unaligned CPTAC3 ea082c2d-babd-4dbb-8a36-4d8aa6ed65e7 da4fe6c7c2ee00e7df2bb3def5d54181 { 'aliquot_tag': 'ALQ_82d4e950', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-02118.RNA-Seq.transcriptome.T.hg38 C3L-02118 PDA RNA-Seq tumor CPT0109300007 eea03a92-14e6-4fcd-b87f-6ade065e3528.rna_seq.transcriptome.gdc_realn.bam 11031472476 BAM transcriptome harmonized CPTAC3 822243a2-b1a8-4b86-8615-184c1ab4b8a1 8d630497ead408659a8f367e8ba1451b { 'aliquot_tag': 'ALQ_82d4e950', 'gdc_sample_type': 'Primary Tumor' } C3L-02118.WGS.N C3L-02118 PDA WGS blood_normal CPT0109340002 CPT0109340002.WholeGenome.RP-1303.bam 59071471393 BAM aligned CPTAC3 a5d367f5-42c1-4c56-b014-c4dbedc9cd61 576033be3aee71152093663858acb513 { 'aliquot_tag': 'ALQ_73ebb1f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02118.WGS.N.hg38 C3L-02118 PDA WGS blood_normal CPT0109340002 ee262e1d-0560-4720-9270-41ed676d887b_wgs_gdc_realn.bam 87128184483 BAM harmonized CPTAC3 0851b674-0d5c-4984-84fb-3fbb214abcf6 64e45abd7b2290195a7c7557869c9698 { 'aliquot_tag': 'ALQ_73ebb1f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9179,13 +9880,16 @@ C3L-02119.MethArray.Green.T C3L-02119 UCEC Methylation Array tumor CPT0114340009 C3L-02119.MethArray.Red.T C3L-02119 UCEC Methylation Array tumor CPT0114340009 203281980233_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 417ee91e-518b-4a81-846e-218a5a731ab6 6dd4990a31ce09c49a474f8c128fe3ce { 'aliquot_tag': 'ALQ_3d9103c9', 'gdc_sample_type': 'Primary Tumor' } C3L-02119.miRNA-Seq.T C3L-02119 UCEC miRNA-Seq tumor CPT0114340006 190108_UNC31-K00269_0176_AHYGLVBBXX_GGTAGC_S24_L002_R1_001.unaln.bam 303658243 BAM unaligned CPTAC3 4a9f0068-655c-4132-bf94-b492eaa66d96 d37c059867da517d4c9b99360953a369 { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor' } C3L-02119.miRNA-Seq.T.hg38 C3L-02119 UCEC miRNA-Seq tumor CPT0114340006 883fcdb5-a7b1-4d87-9cf9-6a6a70f913c0_mirnaseq_gdc_realn.bam 324630427 BAM harmonized CPTAC3 8c70855c-ab1c-41ce-a7d5-fd3e5e8d8248 afb28eb1dcdc01e3d3af0281083d158e { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor' } -C3L-02119.RNA-Seq.chimeric.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f83b5e4b-657e-4ebf-921d-3d02817abb7c.rna_seq.chimeric.gdc_realn.bam 32496845 BAM chimeric harmonized CPTAC3 250bdde3-630b-47e8-a856-49c2243f3d6c b60f25315bc80070d7485e57722b3278 { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor' } -C3L-02119.RNA-Seq.genomic.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f83b5e4b-657e-4ebf-921d-3d02817abb7c.rna_seq.genomic.gdc_realn.bam 10803928262 BAM genomic harmonized CPTAC3 8d0d0a6c-d3ad-4b27-b105-835d2fe063b9 3600798a2d0434925f1f2fcaea22960b { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor' } -C3L-02119.RNA-Seq.R1_L005.T C3L-02119 UCEC RNA-Seq tumor CPT0114340006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 4545023323 FASTQ R1_L005 unaligned CPTAC3 256c5657-c1a4-4d03-bc9e-74efb01b5dd0 c73d1247929f7d1a290420ededbfc0dc { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor' } -C3L-02119.RNA-Seq.R1_.T C3L-02119 UCEC RNA-Seq tumor CPT0114450001 20210714_P1_H3_WB7988_plate1_S86_R1_001.fastq.gz 5017337379 FASTQ R1_ unaligned CPTAC3 d5501f0a-89f0-429e-89f8-2ccbf21fed06 ec38de04c390a9f697c4cc76623e5f72 { 'aliquot_tag': 'ALQ_132f92f3', 'gdc_sample_type': 'Primary Tumor' } -C3L-02119.RNA-Seq.R2_L005.T C3L-02119 UCEC RNA-Seq tumor CPT0114340006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 4917687906 FASTQ R2_L005 unaligned CPTAC3 60f04f66-07de-40a8-9215-0b8937336e38 71e9abce8a7a073347c293afa7e67a47 { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor' } -C3L-02119.RNA-Seq.R2_.T C3L-02119 UCEC RNA-Seq tumor CPT0114450001 20210714_P1_H3_WB7988_plate1_S86_R2_001.fastq.gz 5174843340 FASTQ R2_ unaligned CPTAC3 e4c3ed17-b6a9-4027-bdee-ba9826c6582d bc9d4a5d29ddace54c2f567f7add5066 { 'aliquot_tag': 'ALQ_132f92f3', 'gdc_sample_type': 'Primary Tumor' } -C3L-02119.RNA-Seq.transcriptome.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f83b5e4b-657e-4ebf-921d-3d02817abb7c.rna_seq.transcriptome.gdc_realn.bam 10349558837 BAM transcriptome harmonized CPTAC3 9bc22ff9-2fc1-4676-8dcd-c331eb9acb5f d21bbd020324b3c98ab5897ca93c9c55 { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor' } +C3L-02119.RNA-Seq.chimeric.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f433b7c2-a53a-49e8-bca6-b25621ced4bd.rna_seq.chimeric.gdc_realn.bam 32481170 BAM chimeric harmonized CPTAC3 0a2f23b1-21ef-477f-8dfe-38683848bdb0 388499b7fc9ba248c397f9ec663d0cf1 { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor' } +C3L-02119.RNA-Seq.chimeric.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114450001 0b79a15a-edee-4324-aeef-a5db5b29abee.rna_seq.chimeric.gdc_realn.bam 142348899 BAM chimeric harmonized CPTAC3 3e56bfa8-ddc4-4e92-bd0f-e3c4b686bf78 5c6340439d79c69fd03ec7a430b21ec1 { 'aliquot_tag': 'ALQ_132f92f3', 'gdc_sample_type': 'Primary Tumor' } +C3L-02119.RNA-Seq.genomic.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f433b7c2-a53a-49e8-bca6-b25621ced4bd.rna_seq.genomic.gdc_realn.bam 10805924998 BAM genomic harmonized CPTAC3 8bd2e211-4269-4a71-8d77-d6e5fed8796b 14d6f610961be95980d251cfbf9f94d1 { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor' } +C3L-02119.RNA-Seq.genomic.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114450001 0b79a15a-edee-4324-aeef-a5db5b29abee.rna_seq.genomic.gdc_realn.bam 8430924443 BAM genomic harmonized CPTAC3 a9482e2d-d147-4cc3-9f2e-6db867eb3385 7991c4bac11d92fd3a4a94691b9fb254 { 'aliquot_tag': 'ALQ_132f92f3', 'gdc_sample_type': 'Primary Tumor' } +C3L-02119.RNA-Seq.R1_L005.T C3L-02119 UCEC RNA-Seq tumor CPT0114340006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 4545023323 FASTQ R1_L005 unaligned CPTAC3 256c5657-c1a4-4d03-bc9e-74efb01b5dd0 c73d1247929f7d1a290420ededbfc0dc { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02119.RNA-Seq.R2_L005.T C3L-02119 UCEC RNA-Seq tumor CPT0114340006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 4917687906 FASTQ R2_L005 unaligned CPTAC3 60f04f66-07de-40a8-9215-0b8937336e38 71e9abce8a7a073347c293afa7e67a47 { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-02119.RNA-Seq.T C3L-02119 UCEC RNA-Seq tumor CPT0114450001 20210714_P1_H3_WB7988_plate1_S86_R1_001.fastq.gz 5017337379 FASTQ unaligned CPTAC3 d5501f0a-89f0-429e-89f8-2ccbf21fed06 ec38de04c390a9f697c4cc76623e5f72 +C3L-02119.RNA-Seq.T C3L-02119 UCEC RNA-Seq tumor CPT0114450001 20210714_P1_H3_WB7988_plate1_S86_R2_001.fastq.gz 5174843340 FASTQ unaligned CPTAC3 e4c3ed17-b6a9-4027-bdee-ba9826c6582d bc9d4a5d29ddace54c2f567f7add5066 +C3L-02119.RNA-Seq.transcriptome.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114340006 f433b7c2-a53a-49e8-bca6-b25621ced4bd.rna_seq.transcriptome.gdc_realn.bam 11767625488 BAM transcriptome harmonized CPTAC3 a9e79415-63cb-47b7-8c11-c26d97e627a2 b2b1c1d266f607273680a919cfd20a63 { 'aliquot_tag': 'ALQ_ad2e1e58', 'gdc_sample_type': 'Primary Tumor' } +C3L-02119.RNA-Seq.transcriptome.T.hg38 C3L-02119 UCEC RNA-Seq tumor CPT0114450001 0b79a15a-edee-4324-aeef-a5db5b29abee.rna_seq.transcriptome.gdc_realn.bam 6447553665 BAM transcriptome harmonized CPTAC3 64726da3-9ffe-4981-a08d-76f851eaa93f c29d9bfcba84629d8ef59de84ba21411 { 'aliquot_tag': 'ALQ_132f92f3', 'gdc_sample_type': 'Primary Tumor' } C3L-02119.WGS.N C3L-02119 UCEC WGS blood_normal CPT0116070002 CPT0116070002.WholeGenome.RP-1303.bam 55338054810 BAM aligned CPTAC3 99d1c0ff-a64d-4b13-8134-8fa535ca6963 d8f4d91cef357bc191167881418093da { 'aliquot_tag': 'ALQ_fce8c316', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02119.WGS.N.hg38 C3L-02119 UCEC WGS blood_normal CPT0116070002 8858dc7e-092e-4403-85cd-3caf6919cb3f_wgs_gdc_realn.bam 79047960040 BAM harmonized CPTAC3 4c124cde-0a02-4f6c-bab2-0094dd44a24a 85b525d7c5dc6094b0b0a36047dd948d { 'aliquot_tag': 'ALQ_fce8c316', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02119.WGS.T C3L-02119 UCEC WGS tumor CPT0114340009 CPT0114340009.WholeGenome.RP-1303.bam 56933733093 BAM aligned CPTAC3 f4d9e5f6-42f6-4493-b334-c0c8c72d6d72 fec2e3e0b44f3fb51e7a5d79c1e3a1c8 { 'aliquot_tag': 'ALQ_3d9103c9', 'gdc_sample_type': 'Primary Tumor' } @@ -9200,18 +9904,21 @@ C3L-02121.miRNA-Seq.A C3L-02121 UCEC miRNA-Seq tissue_normal CPT0114180009 19013 C3L-02121.miRNA-Seq.A.hg38 C3L-02121 UCEC miRNA-Seq tissue_normal CPT0114180009 94495c31-1e3d-4656-8ee6-34e3334c9c3c_mirnaseq_gdc_realn.bam 227078076 BAM harmonized CPTAC3 a0f92b84-d15e-4e47-a0b2-2dca706145b2 1aa8738269defbb25741e9b338271955 { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02121.miRNA-Seq.T C3L-02121 UCEC miRNA-Seq tumor CPT0114100006 190108_UNC31-K00269_0176_AHYGLVBBXX_GAGTGG_S23_L002_R1_001.unaln.bam 178952739 BAM unaligned CPTAC3 f634478d-79c5-4130-acfb-8a302283441b 0c791ab7ea5ec9d5f446685856708fb6 { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor' } C3L-02121.miRNA-Seq.T.hg38 C3L-02121 UCEC miRNA-Seq tumor CPT0114100006 8c916da0-b0b2-411f-8af1-54528a63df57_mirnaseq_gdc_realn.bam 192618105 BAM harmonized CPTAC3 21ee99dc-29e2-4e59-a7aa-2ab441c9277b f9d45fed1ec76a89b1fccf045873e885 { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor' } -C3L-02121.RNA-Seq.chimeric.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 96971adf-1585-4e97-8385-82b669babf22.rna_seq.chimeric.gdc_realn.bam 46598440 BAM chimeric harmonized CPTAC3 be5310c4-303e-4f9a-beb3-a9faa2e0ff0d b6a48cb70523dfee2b1b8ad004198d18 { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02121.RNA-Seq.chimeric.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 3a9ff980-6976-48ce-938a-b2e5e8f79c8c.rna_seq.chimeric.gdc_realn.bam 29169609 BAM chimeric harmonized CPTAC3 7bc590d4-aed2-474e-93ee-98b0e99fb326 9ebba8145d4a78f83498ab38d7c8a5c6 { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor' } -C3L-02121.RNA-Seq.genomic.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 96971adf-1585-4e97-8385-82b669babf22.rna_seq.genomic.gdc_realn.bam 7783986532 BAM genomic harmonized CPTAC3 e27ba50f-cf4f-4be5-bf77-ce89bbdcb759 d9ccadcaf0ce5010ddd1ca1985fd39bd { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02121.RNA-Seq.genomic.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 3a9ff980-6976-48ce-938a-b2e5e8f79c8c.rna_seq.genomic.gdc_realn.bam 9687731299 BAM genomic harmonized CPTAC3 dcbcff9e-19f4-498b-a5cb-5e225314c294 c2042a7e6e73ca622ebc141e4a9c271c { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor' } -C3L-02121.RNA-Seq.R1_L001.A C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3575278323 FASTQ R1_L001 unaligned CPTAC3 cb0e2dc0-8870-47c4-9aeb-b8bbed4415bf 16542ddc0f57ad063219719083ccca70 { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02121.RNA-Seq.R1_L005.T C3L-02121 UCEC RNA-Seq tumor CPT0114100006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4396825485 FASTQ R1_L005 unaligned CPTAC3 d68f2587-ca3d-41ee-a28c-2b610806cea3 f55a8cda5db37c047981477174d969aa { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor' } -C3L-02121.RNA-Seq.R1_.T C3L-02121 UCEC RNA-Seq tumor CPT0114110001 20210714_P1_D9_WB7988_plate1_S45_R1_001.fastq.gz 4233986735 FASTQ R1_ unaligned CPTAC3 87fd6962-8658-47a8-929b-e49996ac2b9a 19a1c8ff68109662578b3120962d88e9 { 'aliquot_tag': 'ALQ_b662a580', 'gdc_sample_type': 'Primary Tumor' } -C3L-02121.RNA-Seq.R2_L001.A C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L001_R2_001.fastq.gz 3847646986 FASTQ R2_L001 unaligned CPTAC3 81259fe6-e7b3-450f-9ee5-fd32787426dd ac73954dedf12f00b2aa4de2b8700c47 { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02121.RNA-Seq.R2_L005.T C3L-02121 UCEC RNA-Seq tumor CPT0114100006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 4689841555 FASTQ R2_L005 unaligned CPTAC3 0ab21403-3cac-4604-b86d-2b019f06a40c de14ccaf184ea56adb6754e962645f59 { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor' } -C3L-02121.RNA-Seq.R2_.T C3L-02121 UCEC RNA-Seq tumor CPT0114110001 20210714_P1_D9_WB7988_plate1_S45_R2_001.fastq.gz 4420810011 FASTQ R2_ unaligned CPTAC3 9743d6b6-48f6-45cb-b6e1-a371a74c3b95 7b27b8b1d4208399cb2b5cadbdcdb0ff { 'aliquot_tag': 'ALQ_b662a580', 'gdc_sample_type': 'Primary Tumor' } -C3L-02121.RNA-Seq.transcriptome.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 96971adf-1585-4e97-8385-82b669babf22.rna_seq.transcriptome.gdc_realn.bam 9489323380 BAM transcriptome harmonized CPTAC3 ec814e89-249a-45ba-b3c0-a7a9e8a722a3 79915c3abffc5702b7cc3929f16cc5ed { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02121.RNA-Seq.transcriptome.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 3a9ff980-6976-48ce-938a-b2e5e8f79c8c.rna_seq.transcriptome.gdc_realn.bam 11040620746 BAM transcriptome harmonized CPTAC3 3f30261a-f8a7-4f88-b8a9-5c04dd68b39f f0b1d9c20dec6d766f1ce44f6368d7ee { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor' } +C3L-02121.RNA-Seq.chimeric.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 a5f10e76-73f3-4b25-86d0-582e3c52fa9c.rna_seq.chimeric.gdc_realn.bam 46578017 BAM chimeric harmonized CPTAC3 fa3e554c-e843-431f-89d1-9bba674ed6e9 0b6906a66bf493c491641dc98690ce36 { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02121.RNA-Seq.chimeric.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 adb52a42-b59b-4942-9566-8d7f59aa9695.rna_seq.chimeric.gdc_realn.bam 29152732 BAM chimeric harmonized CPTAC3 4b5e42ca-fec3-48f1-8963-79c267b0718d 7cc75f90ae67a8240a58c3f07ba58c86 { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor' } +C3L-02121.RNA-Seq.chimeric.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114110001 ee072c91-8fd1-4745-b6f6-ea97dc602db1.rna_seq.chimeric.gdc_realn.bam 131883766 BAM chimeric harmonized CPTAC3 db1173d7-38dd-4db7-8f81-454a0e27e26d d36b65d7e1b4df182206fb25e0fd402e { 'aliquot_tag': 'ALQ_b662a580', 'gdc_sample_type': 'Primary Tumor' } +C3L-02121.RNA-Seq.genomic.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 a5f10e76-73f3-4b25-86d0-582e3c52fa9c.rna_seq.genomic.gdc_realn.bam 7784515531 BAM genomic harmonized CPTAC3 c3902643-b7bc-4409-9984-091c9558fccd 1586bc3c4542a6220129c53b6c1d5cab { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02121.RNA-Seq.genomic.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 adb52a42-b59b-4942-9566-8d7f59aa9695.rna_seq.genomic.gdc_realn.bam 9689659409 BAM genomic harmonized CPTAC3 e409ad0e-5b72-4944-b641-c0c6eba89139 339539aa4782f341a60b10380d4abe0d { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor' } +C3L-02121.RNA-Seq.genomic.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114110001 ee072c91-8fd1-4745-b6f6-ea97dc602db1.rna_seq.genomic.gdc_realn.bam 6504198618 BAM genomic harmonized CPTAC3 1e1622cc-8426-4d8e-9a8a-c1ce6276ff5a dc2b427bc595cf05e0569c6366df3370 { 'aliquot_tag': 'ALQ_b662a580', 'gdc_sample_type': 'Primary Tumor' } +C3L-02121.RNA-Seq.R1_L001.A C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3575278323 FASTQ R1_L001 unaligned CPTAC3 cb0e2dc0-8870-47c4-9aeb-b8bbed4415bf 16542ddc0f57ad063219719083ccca70 { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-02121.RNA-Seq.R1_L005.T C3L-02121 UCEC RNA-Seq tumor CPT0114100006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4396825485 FASTQ R1_L005 unaligned CPTAC3 d68f2587-ca3d-41ee-a28c-2b610806cea3 f55a8cda5db37c047981477174d969aa { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02121.RNA-Seq.R2_L001.A C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L001_R2_001.fastq.gz 3847646986 FASTQ R2_L001 unaligned CPTAC3 81259fe6-e7b3-450f-9ee5-fd32787426dd ac73954dedf12f00b2aa4de2b8700c47 { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-02121.RNA-Seq.R2_L005.T C3L-02121 UCEC RNA-Seq tumor CPT0114100006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 4689841555 FASTQ R2_L005 unaligned CPTAC3 0ab21403-3cac-4604-b86d-2b019f06a40c de14ccaf184ea56adb6754e962645f59 { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-02121.RNA-Seq.T C3L-02121 UCEC RNA-Seq tumor CPT0114110001 20210714_P1_D9_WB7988_plate1_S45_R1_001.fastq.gz 4233986735 FASTQ unaligned CPTAC3 87fd6962-8658-47a8-929b-e49996ac2b9a 19a1c8ff68109662578b3120962d88e9 +C3L-02121.RNA-Seq.T C3L-02121 UCEC RNA-Seq tumor CPT0114110001 20210714_P1_D9_WB7988_plate1_S45_R2_001.fastq.gz 4420810011 FASTQ unaligned CPTAC3 9743d6b6-48f6-45cb-b6e1-a371a74c3b95 7b27b8b1d4208399cb2b5cadbdcdb0ff +C3L-02121.RNA-Seq.transcriptome.A.hg38 C3L-02121 UCEC RNA-Seq tissue_normal CPT0114180009 a5f10e76-73f3-4b25-86d0-582e3c52fa9c.rna_seq.transcriptome.gdc_realn.bam 10891459186 BAM transcriptome harmonized CPTAC3 bd98b851-da00-42d3-8066-90134c8fa293 a35923329252f59b6505dc564d6d5aa9 { 'aliquot_tag': 'ALQ_b5a94fc3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02121.RNA-Seq.transcriptome.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114100006 adb52a42-b59b-4942-9566-8d7f59aa9695.rna_seq.transcriptome.gdc_realn.bam 12627985794 BAM transcriptome harmonized CPTAC3 1da0748d-feb1-4a24-85c3-33ec4e18ec45 67fb4556596dfbe1c08ff8170f833f2d { 'aliquot_tag': 'ALQ_15661993', 'gdc_sample_type': 'Primary Tumor' } +C3L-02121.RNA-Seq.transcriptome.T.hg38 C3L-02121 UCEC RNA-Seq tumor CPT0114110001 ee072c91-8fd1-4745-b6f6-ea97dc602db1.rna_seq.transcriptome.gdc_realn.bam 4866177581 BAM transcriptome harmonized CPTAC3 169c3ac4-42ab-4916-83ea-6ff1dc2dac31 e779630312fcede9217580ff90e2fd7e { 'aliquot_tag': 'ALQ_b662a580', 'gdc_sample_type': 'Primary Tumor' } C3L-02121.WGS.A C3L-02121 UCEC WGS tissue_normal CPT0114180006 CPT0114180006.WholeGenome.RP-1303.bam 60069332148 BAM aligned CPTAC3 d81df8f4-b649-44ff-a403-8f42241d6b84 06403672f2f43e22f11825a7de394c37 { 'aliquot_tag': 'ALQ_25165252', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02121.WGS.A.hg38 C3L-02121 UCEC WGS tissue_normal CPT0114180006 a1d530af-8ad8-4c00-b483-1d3f8b71465e_wgs_gdc_realn.bam 88868521307 BAM harmonized CPTAC3 e9ff7aae-1009-4158-869d-06615ccac09c c1c7308970b8fbcf381045ae80e9a47f { 'aliquot_tag': 'ALQ_25165252', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02121.WGS.N C3L-02121 UCEC WGS blood_normal CPT0116060002 CPT0116060002.WholeGenome.RP-1303.bam 59258106616 BAM aligned CPTAC3 51b62346-cdba-45e2-af64-ae3eb31bc8c1 126bd7247e481b594c99957261e1f173 { 'aliquot_tag': 'ALQ_c188eaa6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9228,13 +9935,16 @@ C3L-02125.MethArray.Green.T C3L-02125 UCEC Methylation Array tumor CPT0197250006 C3L-02125.MethArray.Red.T C3L-02125 UCEC Methylation Array tumor CPT0197250006 203561450114_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 08e6589a-7142-488a-84c0-dfcc279c73aa 45956f84059adf55a94bad35fe332279 { 'aliquot_tag': 'ALQ_b91fe565', 'gdc_sample_type': 'Primary Tumor' } C3L-02125.miRNA-Seq.T C3L-02125 UCEC miRNA-Seq tumor CPT0197250009 190508_UNC31-K00269_0215_BH7FYKBBXY_CACGAT_S31_L004_R1_001.unaln.bam 215015791 BAM unaligned CPTAC3 5e49d0fb-d7b6-49f3-8d4d-5e53226c15c1 c97e2e34038427b1f4666591f3718732 { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor' } C3L-02125.miRNA-Seq.T.hg38 C3L-02125 UCEC miRNA-Seq tumor CPT0197250009 e05b7e01-2f91-4830-a8ee-4ad22cc0baae_mirnaseq_gdc_realn.bam 238701998 BAM harmonized CPTAC3 803fab09-269e-4b67-820d-577064bfcbef 57afcaa01fb4e88f46b6cc904cd7b50c { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02125.RNA-Seq.chimeric.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 2fbe68fc-4ed3-4a37-bfd3-84237673b834.rna_seq.chimeric.gdc_realn.bam 47838278 BAM chimeric harmonized CPTAC3 9f5c5284-b8a3-4b85-bb9b-e7b283794c9b 48149acaef1bdf0ffb1b17f7592c7a96 { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02125.RNA-Seq.genomic.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 2fbe68fc-4ed3-4a37-bfd3-84237673b834.rna_seq.genomic.gdc_realn.bam 10415545335 BAM genomic harmonized CPTAC3 44d8fdee-ecac-445b-ac1a-17cc9175ef13 2294f6db6bcb8ee79ff8d5eb0cd9b6e1 { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02125.RNA-Seq.R1_L003.T C3L-02125 UCEC RNA-Seq tumor CPT0197250009 190523_UNC32-K00270_0176_BH7CW7BBXY_ACAGGCGC-CTCTGCCT_S10_L003_R1_001.fastq.gz 4880274619 FASTQ R1_L003 unaligned CPTAC3 efaf4cdf-25d0-4b27-b293-fef28bf1053a b0f5672a8ce70bdd8b714eac32df2cae { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02125.RNA-Seq.R1_.T C3L-02125 UCEC RNA-Seq tumor CPT0197300001 20210723_P2_C7_WB7988-plate2_S31_R1_001.fastq.gz 8281172775 FASTQ R1_ unaligned CPTAC3 d49f0352-6fa8-461c-a6c2-d2544e78436a 9c0a0652482272c6ffa6c7d456873485 { 'aliquot_tag': 'ALQ_24c72c13', 'gdc_sample_type': 'Primary Tumor' } -C3L-02125.RNA-Seq.R2_L003.T C3L-02125 UCEC RNA-Seq tumor CPT0197250009 190523_UNC32-K00270_0176_BH7CW7BBXY_ACAGGCGC-CTCTGCCT_S10_L003_R2_001.fastq.gz 5667449252 FASTQ R2_L003 unaligned CPTAC3 537d3e81-c180-4152-8499-eb54a0832699 9f6dc1614cf4fd143f7d8105cac40b02 { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02125.RNA-Seq.R2_.T C3L-02125 UCEC RNA-Seq tumor CPT0197300001 20210723_P2_C7_WB7988-plate2_S31_R2_001.fastq.gz 8391356759 FASTQ R2_ unaligned CPTAC3 5deb2b3a-1f29-4347-8ed1-932e2b675506 86c97c647b8d2ed1caf83918ecc8eeee { 'aliquot_tag': 'ALQ_24c72c13', 'gdc_sample_type': 'Primary Tumor' } -C3L-02125.RNA-Seq.transcriptome.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 2fbe68fc-4ed3-4a37-bfd3-84237673b834.rna_seq.transcriptome.gdc_realn.bam 11610888604 BAM transcriptome harmonized CPTAC3 484dbd1a-454f-4851-a26a-0ae2fb21ce36 00b93be19078b068fea4158ba20e76f2 { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02125.RNA-Seq.chimeric.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 29e619fd-01e9-4420-9649-9bfb901f7c48.rna_seq.chimeric.gdc_realn.bam 47822194 BAM chimeric harmonized CPTAC3 693b785a-206c-40d6-a436-418d8c5f1099 e2ec5110169b869592d038b8f4592b3f { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02125.RNA-Seq.chimeric.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197300001 e91587d2-6ae3-4c6e-ae94-e3d03fec2384.rna_seq.chimeric.gdc_realn.bam 296740344 BAM chimeric harmonized CPTAC3 b6a84151-5490-400d-8b67-9206135d947a 992ab392aa4c2975b62631b90e1bc955 { 'aliquot_tag': 'ALQ_24c72c13', 'gdc_sample_type': 'Primary Tumor' } +C3L-02125.RNA-Seq.genomic.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 29e619fd-01e9-4420-9649-9bfb901f7c48.rna_seq.genomic.gdc_realn.bam 10416676275 BAM genomic harmonized CPTAC3 368ea975-5e25-4d7e-8b52-643c90f3e699 46d1b3422663e12e08798dba0e9e8c65 { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02125.RNA-Seq.genomic.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197300001 e91587d2-6ae3-4c6e-ae94-e3d03fec2384.rna_seq.genomic.gdc_realn.bam 13784536045 BAM genomic harmonized CPTAC3 cbe0aba0-dfda-4800-8983-6f16badadd2f 7a453741c0314134f53d7e493b5fac35 { 'aliquot_tag': 'ALQ_24c72c13', 'gdc_sample_type': 'Primary Tumor' } +C3L-02125.RNA-Seq.R1_L003.T C3L-02125 UCEC RNA-Seq tumor CPT0197250009 190523_UNC32-K00270_0176_BH7CW7BBXY_ACAGGCGC-CTCTGCCT_S10_L003_R1_001.fastq.gz 4880274619 FASTQ R1_L003 unaligned CPTAC3 efaf4cdf-25d0-4b27-b293-fef28bf1053a b0f5672a8ce70bdd8b714eac32df2cae { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02125.RNA-Seq.R2_L003.T C3L-02125 UCEC RNA-Seq tumor CPT0197250009 190523_UNC32-K00270_0176_BH7CW7BBXY_ACAGGCGC-CTCTGCCT_S10_L003_R2_001.fastq.gz 5667449252 FASTQ R2_L003 unaligned CPTAC3 537d3e81-c180-4152-8499-eb54a0832699 9f6dc1614cf4fd143f7d8105cac40b02 { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02125.RNA-Seq.T C3L-02125 UCEC RNA-Seq tumor CPT0197300001 20210723_P2_C7_WB7988-plate2_S31_R1_001.fastq.gz 8281172775 FASTQ unaligned CPTAC3 d49f0352-6fa8-461c-a6c2-d2544e78436a 9c0a0652482272c6ffa6c7d456873485 +C3L-02125.RNA-Seq.T C3L-02125 UCEC RNA-Seq tumor CPT0197300001 20210723_P2_C7_WB7988-plate2_S31_R2_001.fastq.gz 8391356759 FASTQ unaligned CPTAC3 5deb2b3a-1f29-4347-8ed1-932e2b675506 86c97c647b8d2ed1caf83918ecc8eeee +C3L-02125.RNA-Seq.transcriptome.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197250009 29e619fd-01e9-4420-9649-9bfb901f7c48.rna_seq.transcriptome.gdc_realn.bam 13280505478 BAM transcriptome harmonized CPTAC3 22032269-1d84-4c77-b7ae-bfe6aca31278 92bb0ad37790f68aa85863e98dfa614e { 'aliquot_tag': 'ALQ_29a0f8f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02125.RNA-Seq.transcriptome.T.hg38 C3L-02125 UCEC RNA-Seq tumor CPT0197300001 e91587d2-6ae3-4c6e-ae94-e3d03fec2384.rna_seq.transcriptome.gdc_realn.bam 7668844757 BAM transcriptome harmonized CPTAC3 1a0a349c-9f63-4c86-aca4-2ed56646aa89 7ec6f8711d0b9fd1a45e4f5fb7e73fbb { 'aliquot_tag': 'ALQ_24c72c13', 'gdc_sample_type': 'Primary Tumor' } C3L-02125.WGS.N C3L-02125 UCEC WGS blood_normal CPT0199940002 CPT0199940002.WholeGenome.RP-1303.bam 80092949119 BAM aligned CPTAC3 d54d5504-a551-479e-9aa3-d6149b167f89 b7d5a8e53379e5acb1e52c4f460c0c16 { 'aliquot_tag': 'ALQ_b9ea8352', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02125.WGS.N.hg38 C3L-02125 UCEC WGS blood_normal CPT0199940002 4b853998-7ba1-4649-9783-e09a313508c2_wgs_gdc_realn.bam 117834340024 BAM harmonized CPTAC3 9e47245d-af78-4698-a4f6-296f06c099a5 36089f4c3d05b677c0f903aaa42741f3 { 'aliquot_tag': 'ALQ_b9ea8352', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02125.WGS.T C3L-02125 UCEC WGS tumor CPT0197250006 CPT0197250006.WholeGenome.RP-1303.bam 60455257706 BAM aligned CPTAC3 b1bd6f6e-c0b5-4219-9871-b988dd54f85e 1d3df0d6556ce512671b1197da2e6e13 { 'aliquot_tag': 'ALQ_b91fe565', 'gdc_sample_type': 'Primary Tumor' } @@ -9253,12 +9963,12 @@ C3L-02127.miRNA-Seq.T C3L-02127 LSCC miRNA-Seq tumor CPT0130270006 181219_UNC31- C3L-02127.miRNA-Seq.T.hg38 C3L-02127 LSCC miRNA-Seq tumor CPT0130270006 dac911b3-3edb-4ae9-aebf-36d40ebdcfb9_mirnaseq_gdc_realn.bam 221405100 BAM harmonized CPTAC3 28c2dde0-6117-4c4c-8358-000b1453a5b6 1e64e821b9b96295e8c5178d9a7dca33 { 'aliquot_tag': 'ALQ_97b89443', 'gdc_sample_type': 'Primary Tumor' } C3L-02127.RNA-Seq.chimeric.A.hg38 C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 0ba2efe7-43ec-442d-9a5a-89413f20f8c1.rna_seq.chimeric.gdc_realn.bam 26162229 BAM chimeric harmonized CPTAC3 43465a87-dd53-4f82-ab90-ff6ef778f4e3 ead47cefa2ab7869b23578dab396026c { 'aliquot_tag': 'ALQ_431bafd7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02127.RNA-Seq.chimeric.T.hg38 C3L-02127 LSCC RNA-Seq tumor CPT0130270006 74863b7e-3485-4047-813a-1793dc8d9621.rna_seq.chimeric.gdc_realn.bam 20578482 BAM chimeric harmonized CPTAC3 071586bd-1ba2-430b-b07b-f988b9eab9dd 2a868e87bec8847209d03d3c3ccdce38 { 'aliquot_tag': 'ALQ_97b89443', 'gdc_sample_type': 'Primary Tumor' } -C3L-02127.RNA-Seq.genomic.A.hg38 C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 0ba2efe7-43ec-442d-9a5a-89413f20f8c1.rna_seq.genomic.gdc_realn.bam 8839599012 BAM genomic harmonized CPTAC3 f3c55da1-ceee-4159-a377-9fec41f68647 bb4e84c92357daeac8fd32948b350e57 { 'aliquot_tag': 'ALQ_431bafd7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02127.RNA-Seq.genomic.T.hg38 C3L-02127 LSCC RNA-Seq tumor CPT0130270006 74863b7e-3485-4047-813a-1793dc8d9621.rna_seq.genomic.gdc_realn.bam 7085279116 BAM genomic harmonized CPTAC3 91f95f58-5ed8-4edc-802f-545f2888e890 2d77b51128124311e138b89796228baa { 'aliquot_tag': 'ALQ_97b89443', 'gdc_sample_type': 'Primary Tumor' } -C3L-02127.RNA-Seq.R1_L001.T C3L-02127 LSCC RNA-Seq tumor CPT0130270006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 2841702805 FASTQ R1_L001 unaligned CPTAC3 c4b9fd5d-3909-4c12-8990-cb87061b1380 246739eed48663e1fb88b87e25d9cc8f { 'aliquot_tag': 'ALQ_97b89443', 'gdc_sample_type': 'Primary Tumor' } -C3L-02127.RNA-Seq.R1_L004.A C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 180926_UNC31-K00269_0155_AHWN7WBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 3915032456 FASTQ R1_L004 unaligned CPTAC3 9957ff37-0881-44a5-892b-fa8d3697c021 f81cafcd1265a952a187a3aa1bd00603 { 'aliquot_tag': 'ALQ_431bafd7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02127.RNA-Seq.R2_L001.T C3L-02127 LSCC RNA-Seq tumor CPT0130270006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 3041525879 FASTQ R2_L001 unaligned CPTAC3 8176ddcf-aac5-40dc-a77d-03995569d300 612f44b23bffd4ac71f50511850f78cf { 'aliquot_tag': 'ALQ_97b89443', 'gdc_sample_type': 'Primary Tumor' } -C3L-02127.RNA-Seq.R2_L004.A C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 180926_UNC31-K00269_0155_AHWN7WBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4181211727 FASTQ R2_L004 unaligned CPTAC3 3dce36d1-1b06-44c0-b873-f03f20211de0 70c7f63e79acc3567f92d4a2ad098b24 { 'aliquot_tag': 'ALQ_431bafd7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02127.RNA-Seq.genomic.A.hg38 C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 0ba2efe7-43ec-442d-9a5a-89413f20f8c1.rna_seq.genomic.gdc_realn.bam 8839599012 BAM genomic harmonized CPTAC3 62d5f993-c87f-47de-b9d9-54d703c81a8e bb4e84c92357daeac8fd32948b350e57 { 'aliquot_tag': 'ALQ_431bafd7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02127.RNA-Seq.genomic.T.hg38 C3L-02127 LSCC RNA-Seq tumor CPT0130270006 74863b7e-3485-4047-813a-1793dc8d9621.rna_seq.genomic.gdc_realn.bam 7085279116 BAM genomic harmonized CPTAC3 c5ee1831-e077-4d65-9e00-eddde81b73de 2d77b51128124311e138b89796228baa { 'aliquot_tag': 'ALQ_97b89443', 'gdc_sample_type': 'Primary Tumor' } +C3L-02127.RNA-Seq.R1_L001.T C3L-02127 LSCC RNA-Seq tumor CPT0130270006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 2841702805 FASTQ R1_L001 unaligned CPTAC3 c4b9fd5d-3909-4c12-8990-cb87061b1380 246739eed48663e1fb88b87e25d9cc8f { 'aliquot_tag': 'ALQ_97b89443', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02127.RNA-Seq.R1_L004.A C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 180926_UNC31-K00269_0155_AHWN7WBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 3915032456 FASTQ R1_L004 unaligned CPTAC3 9957ff37-0881-44a5-892b-fa8d3697c021 f81cafcd1265a952a187a3aa1bd00603 { 'aliquot_tag': 'ALQ_431bafd7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02127.RNA-Seq.R2_L001.T C3L-02127 LSCC RNA-Seq tumor CPT0130270006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 3041525879 FASTQ R2_L001 unaligned CPTAC3 8176ddcf-aac5-40dc-a77d-03995569d300 612f44b23bffd4ac71f50511850f78cf { 'aliquot_tag': 'ALQ_97b89443', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02127.RNA-Seq.R2_L004.A C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 180926_UNC31-K00269_0155_AHWN7WBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4181211727 FASTQ R2_L004 unaligned CPTAC3 3dce36d1-1b06-44c0-b873-f03f20211de0 70c7f63e79acc3567f92d4a2ad098b24 { 'aliquot_tag': 'ALQ_431bafd7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-02127.RNA-Seq.transcriptome.A.hg38 C3L-02127 LSCC RNA-Seq tissue_normal CPT0130310009 0ba2efe7-43ec-442d-9a5a-89413f20f8c1.rna_seq.transcriptome.gdc_realn.bam 10178772733 BAM transcriptome harmonized CPTAC3 b8703f9e-a2d3-4131-9c10-708646528456 29ecf90d9393628c175297f627aec911 { 'aliquot_tag': 'ALQ_431bafd7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02127.RNA-Seq.transcriptome.T.hg38 C3L-02127 LSCC RNA-Seq tumor CPT0130270006 74863b7e-3485-4047-813a-1793dc8d9621.rna_seq.transcriptome.gdc_realn.bam 7398487412 BAM transcriptome harmonized CPTAC3 aa82d367-9bef-4d02-a2ba-4659524224e6 56d54a65171faa15b20ae20c0c41d83c { 'aliquot_tag': 'ALQ_97b89443', 'gdc_sample_type': 'Primary Tumor' } C3L-02127.WGS.A C3L-02127 LSCC WGS tissue_normal CPT0130310006 CPT0130310006.WholeGenome.RP-1303.bam 72236691527 BAM aligned CPTAC3 75d1e423-c026-4b55-a8e5-191dd56b007b 1300743801c878e629c9d635b0871668 { 'aliquot_tag': 'ALQ_d3a4b246', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -9277,11 +9987,11 @@ C3L-02129.MethArray.Green.T C3L-02129 LUAD Methylation Array tumor CPT0130170012 C3L-02129.MethArray.Red.T C3L-02129 LUAD Methylation Array tumor CPT0130170012 203219650157_R04C01_Red.idat 13676222 IDAT Red NA CPTAC3 662ab00c-0426-4daa-9a7e-ad7ead3d93a7 d7b5f380528a9fb19f1f5ccae64bf60f { 'aliquot_tag': 'ALQ_f5a13b5', 'gdc_sample_type': 'Primary Tumor' } C3L-02129.miRNA-Seq.T C3L-02129 LUAD miRNA-Seq tumor CPT0130170015 190813_UNC32-K00270_0196_AH5MCWBBXY_TAATCG_S28_L002_R1_001.unaln.bam 239292413 BAM unaligned CPTAC3 5950b9a6-c7df-494e-b031-f75dff85f9a5 cb55ded7b4ba0cc98eee866236513c76 { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor' } C3L-02129.miRNA-Seq.T.hg38 C3L-02129 LUAD miRNA-Seq tumor CPT0130170015 1864c1c4-11a4-4d0d-bc0d-7c28a5c2a5b7_mirnaseq_gdc_realn.bam 266404864 BAM harmonized CPTAC3 86d5089b-c255-4ba5-9f2f-f7a604809482 29b4028e213817fd211e53d19f57a129 { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor' } -C3L-02129.RNA-Seq.chimeric.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 dffcde76-a1c9-4216-b965-d06a2d1b4c90.rna_seq.chimeric.gdc_realn.bam 41049749 BAM chimeric harmonized CPTAC3 94aae5a2-8af2-4681-8796-2eb87d96608d a289e168bb880f1db94df58b44f08659 { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor' } -C3L-02129.RNA-Seq.genomic.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 dffcde76-a1c9-4216-b965-d06a2d1b4c90.rna_seq.genomic.gdc_realn.bam 9234664037 BAM genomic harmonized CPTAC3 c1c83b8c-7007-4de3-b8a5-02b0ae04d357 0737434a4f6606b7662197db699347a9 { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor' } -C3L-02129.RNA-Seq.R1_L004.T C3L-02129 LUAD RNA-Seq tumor CPT0130170015 190131_UNC32-K00270_0142_BH3LFYBBXY_CTTGTA_S14_L004_R1_001.fastq.gz 3661479542 FASTQ R1_L004 unaligned CPTAC3 510fed09-e6bd-4552-9aed-5cdbdd7f3455 b55925418a1d1585339bad8b69d2a08d { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor' } -C3L-02129.RNA-Seq.R2_L004.T C3L-02129 LUAD RNA-Seq tumor CPT0130170015 190131_UNC32-K00270_0142_BH3LFYBBXY_CTTGTA_S14_L004_R2_001.fastq.gz 3982175347 FASTQ R2_L004 unaligned CPTAC3 08cd008c-0097-41a8-98a9-bcf66204ce25 ac4ccdfefcf1302a13bc7e80d5908c8a { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor' } -C3L-02129.RNA-Seq.transcriptome.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 dffcde76-a1c9-4216-b965-d06a2d1b4c90.rna_seq.transcriptome.gdc_realn.bam 7428596190 BAM transcriptome harmonized CPTAC3 79fe8302-e9ff-4886-97b0-6b9d131f0e6a a0cbc6dd8574afb88eb157aca090d088 { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor' } +C3L-02129.RNA-Seq.chimeric.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 240a8e7c-fd1e-4c02-9333-732bd7c0ba28.rna_seq.chimeric.gdc_realn.bam 41050560 BAM chimeric harmonized CPTAC3 79945f22-80e2-4896-968f-1bf91a7b9e16 29989a6380e74bcfe23ad4e3b5e73abb { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor' } +C3L-02129.RNA-Seq.genomic.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 240a8e7c-fd1e-4c02-9333-732bd7c0ba28.rna_seq.genomic.gdc_realn.bam 9236441100 BAM genomic harmonized CPTAC3 0b84726f-a0e9-4ae9-bd36-ace5e5c06970 915ff99dc2161e2636889e5f37b1cb6d { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor' } +C3L-02129.RNA-Seq.R1_L004.T C3L-02129 LUAD RNA-Seq tumor CPT0130170015 190131_UNC32-K00270_0142_BH3LFYBBXY_CTTGTA_S14_L004_R1_001.fastq.gz 3661479542 FASTQ R1_L004 unaligned CPTAC3 510fed09-e6bd-4552-9aed-5cdbdd7f3455 b55925418a1d1585339bad8b69d2a08d { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02129.RNA-Seq.R2_L004.T C3L-02129 LUAD RNA-Seq tumor CPT0130170015 190131_UNC32-K00270_0142_BH3LFYBBXY_CTTGTA_S14_L004_R2_001.fastq.gz 3982175347 FASTQ R2_L004 unaligned CPTAC3 08cd008c-0097-41a8-98a9-bcf66204ce25 ac4ccdfefcf1302a13bc7e80d5908c8a { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02129.RNA-Seq.transcriptome.T.hg38 C3L-02129 LUAD RNA-Seq tumor CPT0130170015 240a8e7c-fd1e-4c02-9333-732bd7c0ba28.rna_seq.transcriptome.gdc_realn.bam 8287017486 BAM transcriptome harmonized CPTAC3 f3cf8e8f-6bc2-457e-bb95-1124c6c22ad3 f68def1662a35fc4807d255c94035d35 { 'aliquot_tag': 'ALQ_913e8616', 'gdc_sample_type': 'Primary Tumor' } C3L-02129.WGS.N C3L-02129 LUAD WGS blood_normal CPT0130250002 CPT0130250002.WholeGenome.RP-1303.bam 60585646851 BAM aligned CPTAC3 4902af61-ef23-4fdb-a17c-b3b21ee0f138 e06232534471cb8e3b6a81fc71bc5532 { 'aliquot_tag': 'ALQ_ea15033a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02129.WGS.N.hg38 C3L-02129 LUAD WGS blood_normal CPT0130250002 475e3abc-03e4-4447-b6ac-839fc068f5ea_wgs_gdc_realn.bam 87886343876 BAM harmonized CPTAC3 5a1e0a78-70c6-4118-a60c-4ef220ea1e8f fae0dbb491d6a849e635760bc859f14a { 'aliquot_tag': 'ALQ_ea15033a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02129.WGS.T C3L-02129 LUAD WGS tumor CPT0130170012 CPT0130170012.WholeGenome.RP-1303.bam 60695904226 BAM aligned CPTAC3 e061ff1a-f063-45c8-b850-d93e17911a58 a798969d5373d395ef56ae5eae595f0b { 'aliquot_tag': 'ALQ_f5a13b5', 'gdc_sample_type': 'Primary Tumor' } @@ -9301,11 +10011,11 @@ C3L-02130.miRNA-Seq.T.hg38 C3L-02130 LSCC miRNA-Seq tumor CPT0130030006 f8cb59f3 C3L-02130.RNA-Seq.chimeric.A.hg38 C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 ca2861f5-ac05-4a08-ba47-3a6e439502a1.rna_seq.chimeric.gdc_realn.bam 29322562 BAM chimeric harmonized CPTAC3 5da11f1b-7d3f-461c-9028-d954cc79f25a 9afc3ed2cb39550cb197321a937f53c6 { 'aliquot_tag': 'ALQ_4acf28d9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02130.RNA-Seq.chimeric.T.hg38 C3L-02130 LSCC RNA-Seq tumor CPT0130030006 360adeb6-b5f2-4bfb-a8c2-ca72154fccac.rna_seq.chimeric.gdc_realn.bam 29312648 BAM chimeric harmonized CPTAC3 0acfc0da-14d1-4b7c-9a97-49fea86dae32 e91bdbaec38d9dfc02e63454090cab44 { 'aliquot_tag': 'ALQ_2ff09388', 'gdc_sample_type': 'Primary Tumor' } C3L-02130.RNA-Seq.genomic.A.hg38 C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 ca2861f5-ac05-4a08-ba47-3a6e439502a1.rna_seq.genomic.gdc_realn.bam 8310262144 BAM genomic harmonized CPTAC3 f9e360f3-1aba-47db-a2f1-b447a03d5db4 401d17d04706e7d5add9eb04c4fe5077 { 'aliquot_tag': 'ALQ_4acf28d9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02130.RNA-Seq.genomic.T.hg38 C3L-02130 LSCC RNA-Seq tumor CPT0130030006 360adeb6-b5f2-4bfb-a8c2-ca72154fccac.rna_seq.genomic.gdc_realn.bam 9702220727 BAM genomic harmonized CPTAC3 610ae1fd-dd94-49d1-91e0-055324b0381f 825d4443fec53b06a514f680bf2b331a { 'aliquot_tag': 'ALQ_2ff09388', 'gdc_sample_type': 'Primary Tumor' } -C3L-02130.RNA-Seq.R1_L004.A C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACAGTG_S15_L004_R1_001.fastq.gz 3917047406 FASTQ R1_L004 unaligned CPTAC3 cc1e3364-5b6f-4dc8-be97-3496bf3ba60d 1dd82c9733186e997500088f356cd2e3 { 'aliquot_tag': 'ALQ_4acf28d9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02130.RNA-Seq.R1_L008.T C3L-02130 LSCC RNA-Seq tumor CPT0130030006 180925_UNC32-K00270_0122_BHWNF7BBXX_CCGTCC_S32_L008_R1_001.fastq.gz 4141732636 FASTQ R1_L008 unaligned CPTAC3 67d963d6-5c15-4837-bfb3-a05ae934c587 e5e76fbe9a5c767816d27c53ececbaa8 { 'aliquot_tag': 'ALQ_2ff09388', 'gdc_sample_type': 'Primary Tumor' } -C3L-02130.RNA-Seq.R2_L004.A C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACAGTG_S15_L004_R2_001.fastq.gz 4154778989 FASTQ R2_L004 unaligned CPTAC3 34c7bf3f-2c72-4179-92da-1226ffc50028 d1b94adacee6ce64b64b69a986cbb9e5 { 'aliquot_tag': 'ALQ_4acf28d9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02130.RNA-Seq.R2_L008.T C3L-02130 LSCC RNA-Seq tumor CPT0130030006 180925_UNC32-K00270_0122_BHWNF7BBXX_CCGTCC_S32_L008_R2_001.fastq.gz 4449174303 FASTQ R2_L008 unaligned CPTAC3 8633e580-d501-4c45-9e20-46a6251a4934 77bb2c7c9270d7184223667269fc17a3 { 'aliquot_tag': 'ALQ_2ff09388', 'gdc_sample_type': 'Primary Tumor' } +C3L-02130.RNA-Seq.genomic.T.hg38 C3L-02130 LSCC RNA-Seq tumor CPT0130030006 360adeb6-b5f2-4bfb-a8c2-ca72154fccac.rna_seq.genomic.gdc_realn.bam 9702220727 BAM genomic harmonized CPTAC3 f28fa833-bd23-43e6-b190-ca214cce44e0 825d4443fec53b06a514f680bf2b331a { 'aliquot_tag': 'ALQ_2ff09388', 'gdc_sample_type': 'Primary Tumor' } +C3L-02130.RNA-Seq.R1_L004.A C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACAGTG_S15_L004_R1_001.fastq.gz 3917047406 FASTQ R1_L004 unaligned CPTAC3 cc1e3364-5b6f-4dc8-be97-3496bf3ba60d 1dd82c9733186e997500088f356cd2e3 { 'aliquot_tag': 'ALQ_4acf28d9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02130.RNA-Seq.R1_L008.T C3L-02130 LSCC RNA-Seq tumor CPT0130030006 180925_UNC32-K00270_0122_BHWNF7BBXX_CCGTCC_S32_L008_R1_001.fastq.gz 4141732636 FASTQ R1_L008 unaligned CPTAC3 67d963d6-5c15-4837-bfb3-a05ae934c587 e5e76fbe9a5c767816d27c53ececbaa8 { 'aliquot_tag': 'ALQ_2ff09388', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02130.RNA-Seq.R2_L004.A C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACAGTG_S15_L004_R2_001.fastq.gz 4154778989 FASTQ R2_L004 unaligned CPTAC3 34c7bf3f-2c72-4179-92da-1226ffc50028 d1b94adacee6ce64b64b69a986cbb9e5 { 'aliquot_tag': 'ALQ_4acf28d9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-02130.RNA-Seq.R2_L008.T C3L-02130 LSCC RNA-Seq tumor CPT0130030006 180925_UNC32-K00270_0122_BHWNF7BBXX_CCGTCC_S32_L008_R2_001.fastq.gz 4449174303 FASTQ R2_L008 unaligned CPTAC3 8633e580-d501-4c45-9e20-46a6251a4934 77bb2c7c9270d7184223667269fc17a3 { 'aliquot_tag': 'ALQ_2ff09388', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-02130.RNA-Seq.transcriptome.A.hg38 C3L-02130 LSCC RNA-Seq tissue_normal CPT0130070009 ca2861f5-ac05-4a08-ba47-3a6e439502a1.rna_seq.transcriptome.gdc_realn.bam 10589584400 BAM transcriptome harmonized CPTAC3 bbe8aca1-d32d-4b10-bfbb-ae83e8264021 c3b86d89c2d4aeaa00f0355029feb58a { 'aliquot_tag': 'ALQ_4acf28d9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02130.RNA-Seq.transcriptome.T.hg38 C3L-02130 LSCC RNA-Seq tumor CPT0130030006 360adeb6-b5f2-4bfb-a8c2-ca72154fccac.rna_seq.transcriptome.gdc_realn.bam 12440581893 BAM transcriptome harmonized CPTAC3 b564c588-88a6-484b-b218-4b4af1a121ad cb6d0a9e83c6b1460623e5daf4ebf9a6 { 'aliquot_tag': 'ALQ_2ff09388', 'gdc_sample_type': 'Primary Tumor' } C3L-02130.WGS.A C3L-02130 LSCC WGS tissue_normal CPT0130070006 CPT0130070006.WholeGenome.RP-1303.bam 54498950725 BAM aligned CPTAC3 9c4eee78-b063-42e7-996b-a25212cd3512 b77e1d627a5af09aea3041b7560faeec { 'aliquot_tag': 'ALQ_da703548', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -9324,13 +10034,14 @@ C3L-02132.MethArray.Green.Tbm C3L-02132 AML Methylation Array tumor_bone_marrow C3L-02132.MethArray.Red.Tbm C3L-02132 AML Methylation Array tumor_bone_marrow CPT0166390002 203561450073_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 f7ed3484-ee2d-46ee-baae-bd5e42634619 f7f9e569ee846cfca04fd5c3d28e5552 { 'aliquot_tag': 'ALQ_cf8906c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02132.miRNA-Seq.Tbm C3L-02132 AML miRNA-Seq tumor_bone_marrow CPT0166400002 190508_UNC31-K00269_0215_BH7FYKBBXY_GAGTGG_S23_L001_R1_001.unaln.bam 224626564 BAM unaligned CPTAC3 2c892be2-0f25-4124-9ee4-f9ef0297af38 d9daab35a3ccf3cfcdce146608fb5751 { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02132.miRNA-Seq.Tbm.hg38 C3L-02132 AML miRNA-Seq tumor_bone_marrow CPT0166400002 045cdf65-de62-454d-82d0-bbde2cb7a8d4_mirnaseq_gdc_realn.bam 248262404 BAM harmonized CPTAC3 0c134d0b-fbb5-475c-80c5-b55d40ed13e5 1c5a97f6c87f7cb0bb3843716ab4e937 { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02132.RNA-Seq.chimeric.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 57626d24-6ed2-4b19-b9b0-7779e7c49ab7.rna_seq.chimeric.gdc_realn.bam 36926403 BAM chimeric harmonized CPTAC3 99699cd7-1d9f-4a50-b416-e824c08b1f39 445b154d21846a58f9669329f06c0dda { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02132.RNA-Seq.genomic.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 57626d24-6ed2-4b19-b9b0-7779e7c49ab7.rna_seq.genomic.gdc_realn.bam 9167115208 BAM genomic harmonized CPTAC3 1bab2279-0cd7-4ae9-8231-98407521204c 8eb00fe0ec048c712957f1b9fda41c8f { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02132.RNA-Seq.R1_L007.Tbm C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCAGAATT-ACCGGCCA_S41_L007_R1_001.fastq.gz 4402299308 FASTQ R1_L007 unaligned CPTAC3 5ced447e-e845-49a9-b617-bd26a1eae460 28cfccb8e77f6999e2dd9483b3051bfb { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02132.RNA-Seq.R2_L007.Tbm C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCAGAATT-ACCGGCCA_S41_L007_R2_001.fastq.gz 5022283422 FASTQ R2_L007 unaligned CPTAC3 db5d73c2-53c6-4ba8-9fa4-255cd1a208fd 613bc36426a0db8c25442900d5de07f6 { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02132.RNA-Seq.transcriptome.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 57626d24-6ed2-4b19-b9b0-7779e7c49ab7.rna_seq.transcriptome.gdc_realn.bam 10106525113 BAM transcriptome harmonized CPTAC3 19f7ea5f-b6de-408d-9a99-75711212778c c618c7a6c92f6392b21a7cf7ecd4430e { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02132.RNA-Seq.chimeric.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 1a0ed7e3-bc8e-4237-92b1-953fad1bafea.rna_seq.chimeric.gdc_realn.bam 36900317 BAM chimeric harmonized CPTAC3 6a489844-6894-47d6-9842-e6b0da252a93 33d46845888a581e2553ce3489fd1333 { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02132.RNA-Seq.genomic.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 1a0ed7e3-bc8e-4237-92b1-953fad1bafea.rna_seq.genomic.gdc_realn.bam 9168018809 BAM genomic harmonized CPTAC3 6303ff9d-25bc-4d9e-a114-bd07d7a23a17 fe5e8eb19d566553f92acb7bcbd65105 { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02132.RNA-Seq.R1_L007.Tbm C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCAGAATT-ACCGGCCA_S41_L007_R1_001.fastq.gz 4402299308 FASTQ R1_L007 unaligned CPTAC3 5ced447e-e845-49a9-b617-bd26a1eae460 28cfccb8e77f6999e2dd9483b3051bfb { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-02132.RNA-Seq.R2_L007.Tbm C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 190522_UNC31-K00269_0217_AH7F5MBBXY_GCAGAATT-ACCGGCCA_S41_L007_R2_001.fastq.gz 5022283422 FASTQ R2_L007 unaligned CPTAC3 db5d73c2-53c6-4ba8-9fa4-255cd1a208fd 613bc36426a0db8c25442900d5de07f6 { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-02132.RNA-Seq.transcriptome.Tbm.hg38 C3L-02132 AML RNA-Seq tumor_bone_marrow CPT0166400002 1a0ed7e3-bc8e-4237-92b1-953fad1bafea.rna_seq.transcriptome.gdc_realn.bam 11649027096 BAM transcriptome harmonized CPTAC3 4b4530ab-b074-45be-b142-8b8e4fa5931f 2c0902c989a9baf16cbcd989c3ecfb5f { 'aliquot_tag': 'ALQ_df9c5409', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02132.WGS.Nbc C3L-02132 AML WGS buccal_normal CPT0166490003 CPT0166490003.WholeGenome.RP-1303.bam 66785394922 BAM aligned CPTAC3 a96fd759-37a7-40e6-8d08-ee0663269e50 6a3d0f762b9099132f00a517c2fd1dd6 { 'aliquot_tag': 'ALQ_a58b06ee', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-02132.WGS.Nbc.hg38 C3L-02132 AML WGS buccal_normal CPT0166490003 baa4fc21-86c9-493d-bf8c-a097720cf807_wgs_gdc_realn.bam 95512500931 BAM harmonized CPTAC3 8daf64b3-8a34-4191-a33e-4b6b6c38592f 565abfdbfa1c7e3db7d685e66a3d3c86 { 'aliquot_tag': 'ALQ_a58b06ee', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-02132.WGS.Tbm C3L-02132 AML WGS tumor_bone_marrow CPT0166390002_1 CPT0166390002_1.WholeGenome.RP-1303.bam 69862755075 BAM aligned CPTAC3 520e8c0a-2acb-4f74-8f27-2a4fa497a7af 493a63ed96e40162b986c089eb4bee69 { 'aliquot_tag': 'ALQ_fbdeeac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02132.WGS.Tbm C3L-02132 AML WGS tumor_bone_marrow CPT0166390002 CPT0166390002.WholeGenome.RP-1303.bam 26137683857 BAM aligned CPTAC3 37fa043b-64db-419d-8042-713e5097c910 01452d76f9db936e33ba2d56ed65e014 { 'aliquot_tag': 'ALQ_cf8906c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02132.WGS.Tbm.hg38 C3L-02132 AML WGS tumor_bone_marrow CPT0166390002 5ebcb838-b5be-4a97-83ad-ee91f207b385_wgs_gdc_realn.bam 35974705542 BAM harmonized CPTAC3 85d7287e-1a59-4f46-bb72-b244838ff573 b1f45d0b0240723de5c84c101a51eb53 { 'aliquot_tag': 'ALQ_cf8906c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02132.WXS.Nbc C3L-02132 AML WXS buccal_normal CPT0166490003 CPT0166490003.WholeExome.RP-1303.bam 25321497026 BAM aligned CPTAC3 2615c697-f758-4edf-96f4-2fd271a22c61 1f388eb31ac56025f506c6ed2f8f4646 { 'aliquot_tag': 'ALQ_a58b06ee', 'gdc_sample_type': 'Buccal Cell Normal' } @@ -9341,11 +10052,11 @@ C3L-02135.MethArray.Green.Tbm C3L-02135 AML Methylation Array tumor_bone_marrow C3L-02135.MethArray.Red.Tbm C3L-02135 AML Methylation Array tumor_bone_marrow CPT0200830002 203561450017_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 3d4a8155-3fd2-467b-9d0e-b1504948450c 18f63d30bf5e3ea7759ff45903fb36ea { 'aliquot_tag': 'ALQ_73cceeda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02135.miRNA-Seq.Tbm C3L-02135 AML miRNA-Seq tumor_bone_marrow CPT0200840002 190508_UNC31-K00269_0215_BH7FYKBBXY_CAAAAG_S28_L002_R1_001.unaln.bam 265210622 BAM unaligned CPTAC3 8e435e18-48b5-4be8-ae7a-3fe71929f2da 4c4d0ffd87c619dc37bf9dc67cef1e8d { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02135.miRNA-Seq.Tbm.hg38 C3L-02135 AML miRNA-Seq tumor_bone_marrow CPT0200840002 5696161b-eaec-4e97-a553-948c4fb8d473_mirnaseq_gdc_realn.bam 312092119 BAM harmonized CPTAC3 956d66e6-9f62-4b41-8ce8-7ded3d9ae533 2ba7a461f38a0236985a70634589f7de { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02135.RNA-Seq.chimeric.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 71271a1a-1442-448a-bbe0-d64fcf919827.rna_seq.chimeric.gdc_realn.bam 44759361 BAM chimeric harmonized CPTAC3 bd046d4f-9adc-4754-854f-b92ffecee793 ea3e203f246aeee9c8e29f9c0facc3cd { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02135.RNA-Seq.genomic.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 71271a1a-1442-448a-bbe0-d64fcf919827.rna_seq.genomic.gdc_realn.bam 8732018153 BAM genomic harmonized CPTAC3 e2c6e84a-faf6-4939-9d9a-ddd2738d02fb 10c42af746e318758551e8726ad08d1a { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02135.RNA-Seq.R1_L006.Tbm C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 190426_UNC32-K00270_0167_AH7CK7BBXY_TCCAACGC-TTGGACTT_S22_L006_R1_001.fastq.gz 4158410268 FASTQ R1_L006 unaligned CPTAC3 fec039da-21f5-4b68-8a65-3859f6aca7ca bcba513e38c12af9e7238b12a615b4f5 { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02135.RNA-Seq.R2_L006.Tbm C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 190426_UNC32-K00270_0167_AH7CK7BBXY_TCCAACGC-TTGGACTT_S22_L006_R2_001.fastq.gz 4847420316 FASTQ R2_L006 unaligned CPTAC3 abe55041-2ae7-40eb-8ccc-6c5a2cae51fb 25d1836e59cbde273cd6ef4a84173134 { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02135.RNA-Seq.transcriptome.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 71271a1a-1442-448a-bbe0-d64fcf919827.rna_seq.transcriptome.gdc_realn.bam 7280620045 BAM transcriptome harmonized CPTAC3 6d8db550-b8a0-403b-900e-5eabdc02d781 f6e59660299466a1c61c28fb4bf56ab9 { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02135.RNA-Seq.chimeric.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 00a8e33d-278d-4f84-86ad-5802912f71cc.rna_seq.chimeric.gdc_realn.bam 44753755 BAM chimeric harmonized CPTAC3 0de4f969-05fb-4d58-9f97-c1b13277bb91 74ccdf46c1e0f0d0ddc703c210bb62db { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02135.RNA-Seq.genomic.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 00a8e33d-278d-4f84-86ad-5802912f71cc.rna_seq.genomic.gdc_realn.bam 8732647369 BAM genomic harmonized CPTAC3 85c82043-3285-4421-a2e9-0c309feb7f12 c3550b820bed2d57016bcad71e0064cb { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02135.RNA-Seq.R1_L006.Tbm C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 190426_UNC32-K00270_0167_AH7CK7BBXY_TCCAACGC-TTGGACTT_S22_L006_R1_001.fastq.gz 4158410268 FASTQ R1_L006 unaligned CPTAC3 fec039da-21f5-4b68-8a65-3859f6aca7ca bcba513e38c12af9e7238b12a615b4f5 { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-02135.RNA-Seq.R2_L006.Tbm C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 190426_UNC32-K00270_0167_AH7CK7BBXY_TCCAACGC-TTGGACTT_S22_L006_R2_001.fastq.gz 4847420316 FASTQ R2_L006 unaligned CPTAC3 abe55041-2ae7-40eb-8ccc-6c5a2cae51fb 25d1836e59cbde273cd6ef4a84173134 { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-02135.RNA-Seq.transcriptome.Tbm.hg38 C3L-02135 AML RNA-Seq tumor_bone_marrow CPT0200840002 00a8e33d-278d-4f84-86ad-5802912f71cc.rna_seq.transcriptome.gdc_realn.bam 8344014008 BAM transcriptome harmonized CPTAC3 562f922d-27c1-4244-a53a-227169975312 ea59404f44bbfa8190060a639028548c { 'aliquot_tag': 'ALQ_c1ec32ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02135.WGS.Nbc C3L-02135 AML WGS buccal_normal CPT0200930006 CPT0200930006.WholeGenome.RP-1303.bam 94613467073 BAM aligned CPTAC3 17f377a7-202d-4773-b656-0948e15ef0ef 5b87130e0db21fe84e2e2c0937facd51 { 'aliquot_tag': 'ALQ_bffdf966', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-02135.WGS.Nbc.hg38 C3L-02135 AML WGS buccal_normal CPT0200930006 a5ec5e8b-c663-4691-aa2d-4a3d1a6f8488_wgs_gdc_realn.bam 136567337787 BAM harmonized CPTAC3 c9d4d913-31bd-4903-9df4-f09fdb1303f4 6f00ae7c51e01c22864d36192f24a89e { 'aliquot_tag': 'ALQ_bffdf966', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-02135.WGS.Tbm C3L-02135 AML WGS tumor_bone_marrow CPT0200830002 CPT0200830002.WholeGenome.RP-1303.bam 85714834242 BAM aligned CPTAC3 6dea8d70-422f-49a2-9c57-4209acc1f5a8 2f1f6fa0e5d4e6ceca83b8bf445c1c13 { 'aliquot_tag': 'ALQ_73cceeda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -9358,11 +10069,11 @@ C3L-02136.MethArray.Green.Tbm C3L-02136 AML Methylation Array tumor_bone_marrow C3L-02136.MethArray.Red.Tbm C3L-02136 AML Methylation Array tumor_bone_marrow CPT0230490001 203561620089_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 da80bfb3-931f-4015-aadd-b09f899c2c0e 64f12eeb9afb7f46db9f11c42149f59e { 'aliquot_tag': 'ALQ_59386059', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02136.miRNA-Seq.Tbm C3L-02136 AML miRNA-Seq tumor_bone_marrow CPT0230500002 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGGCG_S33_L002_R1_001.unaln.bam 197324017 BAM unaligned CPTAC3 f20bbfbf-e033-41b9-b015-62078740293c 175c3d7a69c8644fc5133a781638aad5 { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02136.miRNA-Seq.Tbm.hg38 C3L-02136 AML miRNA-Seq tumor_bone_marrow CPT0230500002 55ef6cd2-cf75-4bbe-b85c-712a7b1f4bd9_mirnaseq_gdc_realn.bam 225196754 BAM harmonized CPTAC3 b64b028a-398c-4272-a69e-5051f3d0158b 2c029d482289578780e8180167657455 { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02136.RNA-Seq.chimeric.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 a13f105a-5f1f-4e42-bcce-b2741406139a.rna_seq.chimeric.gdc_realn.bam 37634311 BAM chimeric harmonized CPTAC3 f6df8df8-4d91-48be-969c-e97356025582 ebb691fc72e839e98bbb94ae3aaec7bd { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02136.RNA-Seq.genomic.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 a13f105a-5f1f-4e42-bcce-b2741406139a.rna_seq.genomic.gdc_realn.bam 8410883332 BAM genomic harmonized CPTAC3 1ecfa146-e8fc-4c0b-bb7d-97bcb89e8c18 067aa7d016ac911000a4beca87231173 { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02136.RNA-Seq.R1_L008.Tbm C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 190426_UNC32-K00270_0167_AH7CK7BBXY_TACCGAGG-CCTGAACT_S24_L008_R1_001.fastq.gz 4055831703 FASTQ R1_L008 unaligned CPTAC3 93909162-a668-410b-8941-d515c441dd77 67534072d9a498cf421c6ac4a0dd3b16 { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02136.RNA-Seq.R2_L008.Tbm C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 190426_UNC32-K00270_0167_AH7CK7BBXY_TACCGAGG-CCTGAACT_S24_L008_R2_001.fastq.gz 4695840850 FASTQ R2_L008 unaligned CPTAC3 b1063253-4dc8-4b9f-8a58-cc0a86a8be4c dd207f5449155ad6033c8f723decd4bb { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02136.RNA-Seq.transcriptome.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 a13f105a-5f1f-4e42-bcce-b2741406139a.rna_seq.transcriptome.gdc_realn.bam 8831674059 BAM transcriptome harmonized CPTAC3 f6106c0b-1f19-42d3-b2b6-1c9b78bc10b4 445cd3e51ec0fb9092b7017ba7b7dcc9 { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02136.RNA-Seq.chimeric.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 c5162757-cc16-45b0-ace0-1d5ab6b9ac47.rna_seq.chimeric.gdc_realn.bam 37614216 BAM chimeric harmonized CPTAC3 e02a0c20-8dc7-4e03-af3f-fcf74f0623d3 3660800f834f357e6165c11c3a7ba89b { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02136.RNA-Seq.genomic.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 c5162757-cc16-45b0-ace0-1d5ab6b9ac47.rna_seq.genomic.gdc_realn.bam 8411859891 BAM genomic harmonized CPTAC3 4b354905-8ac1-4719-8b3b-e993d38650a2 fb06261c2b4604ea95da9c5b86684c99 { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02136.RNA-Seq.R1_L008.Tbm C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 190426_UNC32-K00270_0167_AH7CK7BBXY_TACCGAGG-CCTGAACT_S24_L008_R1_001.fastq.gz 4055831703 FASTQ R1_L008 unaligned CPTAC3 93909162-a668-410b-8941-d515c441dd77 67534072d9a498cf421c6ac4a0dd3b16 { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-02136.RNA-Seq.R2_L008.Tbm C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 190426_UNC32-K00270_0167_AH7CK7BBXY_TACCGAGG-CCTGAACT_S24_L008_R2_001.fastq.gz 4695840850 FASTQ R2_L008 unaligned CPTAC3 b1063253-4dc8-4b9f-8a58-cc0a86a8be4c dd207f5449155ad6033c8f723decd4bb { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-02136.RNA-Seq.transcriptome.Tbm.hg38 C3L-02136 AML RNA-Seq tumor_bone_marrow CPT0230500002 c5162757-cc16-45b0-ace0-1d5ab6b9ac47.rna_seq.transcriptome.gdc_realn.bam 10174893559 BAM transcriptome harmonized CPTAC3 772f9fad-f617-4ae6-b035-80085f364fe9 61048e65aac0b7113e8c7318a778e1dd { 'aliquot_tag': 'ALQ_67d8037', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02136.WGS.Tbm C3L-02136 AML WGS tumor_bone_marrow CPT0230490001 CPT0230490001.WholeGenome.RP-1303.bam 78296980483 BAM aligned CPTAC3 06e7712c-8d5b-4395-8bae-2b6445a787cd 7e907cbee3666f6e92280ea35f58536e { 'aliquot_tag': 'ALQ_59386059', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02136.WGS.Tbm.hg38 C3L-02136 AML WGS tumor_bone_marrow CPT0230490001 a91e6365-7948-4ae6-b105-3ce45da83555_wgs_gdc_realn.bam 116860046661 BAM harmonized CPTAC3 e36d8313-abf7-49ae-9960-268a9a234493 6955e077684bf9a5ea8a46ac7cac5770 { 'aliquot_tag': 'ALQ_59386059', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02136.WXS.Nbc C3L-02136 AML WXS buccal_normal CPT0230590002 CPT0230590002.WholeExome.RP-1303.bam 23615636918 BAM aligned CPTAC3 43ecffb5-d0e0-451a-87c2-dd10438e632f d9231ad9ed08d47347078fe7c1365069 { 'aliquot_tag': 'ALQ_b6de246', 'gdc_sample_type': 'Buccal Cell Normal' } @@ -9373,11 +10084,11 @@ C3L-02137.MethArray.Green.Tbm C3L-02137 AML Methylation Array tumor_bone_marrow C3L-02137.MethArray.Red.Tbm C3L-02137 AML Methylation Array tumor_bone_marrow CPT0201080002 203561620153_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 df33c0ab-09ab-4ab7-ad53-8e9626e38233 8394d18967769906933914301932d3db { 'aliquot_tag': 'ALQ_4e385612', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02137.miRNA-Seq.Tbm C3L-02137 AML miRNA-Seq tumor_bone_marrow CPT0201090002 190508_UNC31-K00269_0215_BH7FYKBBXY_CAACTA_S29_L002_R1_001.unaln.bam 236898385 BAM unaligned CPTAC3 f1be098d-ae0a-4a1c-adcd-12080da5bc6a 98cfc9d8eb5cd77d45f215c1a4101b89 { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02137.miRNA-Seq.Tbm.hg38 C3L-02137 AML miRNA-Seq tumor_bone_marrow CPT0201090002 cf87ae14-740d-4064-bf50-e99d12db6189_mirnaseq_gdc_realn.bam 249534340 BAM harmonized CPTAC3 b848bcc2-e071-405f-a7c0-09466578adc9 18d7a8c0dafc4290175acb47c12077d2 { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02137.RNA-Seq.chimeric.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 2f7d6999-f335-4a8d-9058-2e15994084b7.rna_seq.chimeric.gdc_realn.bam 37068395 BAM chimeric harmonized CPTAC3 be5d2904-dd28-43d6-859d-f47453d791ce 554a4577cec9416c701897114b42acfc { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02137.RNA-Seq.genomic.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 2f7d6999-f335-4a8d-9058-2e15994084b7.rna_seq.genomic.gdc_realn.bam 8390753134 BAM genomic harmonized CPTAC3 c5efd52d-956c-46ed-81b9-64c634ab43c2 e1e408196d8c80c7f020907413b83922 { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02137.RNA-Seq.R1_L007.Tbm C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L007_R1_001.fastq.gz 3695423280 FASTQ R1_L007 unaligned CPTAC3 ff7ac451-2cf4-4e4a-b9ea-e931703cc80c 4eaaa8f628a3156282c1743ad328a0b3 { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02137.RNA-Seq.R2_L007.Tbm C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L007_R2_001.fastq.gz 4055355031 FASTQ R2_L007 unaligned CPTAC3 c21ae1be-157e-4641-8e90-886929f1a59d 63d44be17d68252ca1360ad2965da74a { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-02137.RNA-Seq.transcriptome.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 2f7d6999-f335-4a8d-9058-2e15994084b7.rna_seq.transcriptome.gdc_realn.bam 9776358870 BAM transcriptome harmonized CPTAC3 19a543a9-4646-4b9e-a8b6-78a0d9c5cc2c b82c858de9b6d2126669739e5f68cf50 { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02137.RNA-Seq.chimeric.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 ea914f71-9b8e-4488-a680-6d082175a3fd.rna_seq.chimeric.gdc_realn.bam 37060120 BAM chimeric harmonized CPTAC3 4e2920c4-2bf6-4b58-adb9-34bd9343a317 ce877d5e37e82ed2261f98e76197e30a { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02137.RNA-Seq.genomic.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 ea914f71-9b8e-4488-a680-6d082175a3fd.rna_seq.genomic.gdc_realn.bam 8391637479 BAM genomic harmonized CPTAC3 bf3765b6-62c6-4842-9b4a-1294d154e677 d8b0e8015629a0efe85af317c6c72615 { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-02137.RNA-Seq.R1_L007.Tbm C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L007_R1_001.fastq.gz 3695423280 FASTQ R1_L007 unaligned CPTAC3 ff7ac451-2cf4-4e4a-b9ea-e931703cc80c 4eaaa8f628a3156282c1743ad328a0b3 { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-02137.RNA-Seq.R2_L007.Tbm C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L007_R2_001.fastq.gz 4055355031 FASTQ R2_L007 unaligned CPTAC3 c21ae1be-157e-4641-8e90-886929f1a59d 63d44be17d68252ca1360ad2965da74a { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-02137.RNA-Seq.transcriptome.Tbm.hg38 C3L-02137 AML RNA-Seq tumor_bone_marrow CPT0201090002 ea914f71-9b8e-4488-a680-6d082175a3fd.rna_seq.transcriptome.gdc_realn.bam 11203758229 BAM transcriptome harmonized CPTAC3 09d9e30f-3fb6-42d0-9082-e48b4fbce998 4b2d901b91f99e21da137b021c9e19de { 'aliquot_tag': 'ALQ_73587fa2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02137.WGS.Tbm C3L-02137 AML WGS tumor_bone_marrow CPT0201080002 CPT0201080002.WholeGenome.RP-1303.bam 59522615984 BAM aligned CPTAC3 333ae522-3bcd-4cb5-aff1-71dd16888993 b9d680a917fb112cba2eea0ed1c2a0d9 { 'aliquot_tag': 'ALQ_4e385612', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02137.WGS.Tbm.hg38 C3L-02137 AML WGS tumor_bone_marrow CPT0201080002 3ee3c9e8-3e28-4f35-b7d7-d90497a50bdb_wgs_gdc_realn.bam 86778064337 BAM harmonized CPTAC3 085f975e-7081-44d8-ab72-cb1341ba9ee7 525387dfd2088720736ffb15230481b7 { 'aliquot_tag': 'ALQ_4e385612', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-02137.WXS.Nbc C3L-02137 AML WXS buccal_normal CPT0201120003 CPT0201120003.WholeExome.RP-1303.bam 26684903177 BAM aligned CPTAC3 10583595-74c3-4d4d-867a-eec0337e54bc 2922a2ae9db6de52bdb19f22087cc032 { 'aliquot_tag': 'ALQ_b8d3ad80', 'gdc_sample_type': 'Buccal Cell Normal' } @@ -9394,12 +10105,12 @@ C3L-02163.miRNA-Seq.T C3L-02163 LSCC miRNA-Seq tumor CPT0175120013 181219_UNC31- C3L-02163.miRNA-Seq.T.hg38 C3L-02163 LSCC miRNA-Seq tumor CPT0175120013 a380422d-93ef-41cb-9997-6cf86df9e91b_mirnaseq_gdc_realn.bam 307425784 BAM harmonized CPTAC3 0ad3e93e-3fd6-4354-aa7f-071e32ac66e2 3f05cee582b98d6a4f0289cac1f08589 { 'aliquot_tag': 'ALQ_66cf8d0e', 'gdc_sample_type': 'Primary Tumor' } C3L-02163.RNA-Seq.chimeric.A.hg38 C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 f33d8651-887e-48b2-9eca-e179956a6372.rna_seq.chimeric.gdc_realn.bam 257206250 BAM chimeric harmonized CPTAC3 ce9159f4-8365-4522-bffd-196f634ea1ec 6ac9939c9ce2fe008d3f36924d44f48d { 'aliquot_tag': 'ALQ_6a81f391', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02163.RNA-Seq.chimeric.T.hg38 C3L-02163 LSCC RNA-Seq tumor CPT0175120013 c680994d-c101-4d43-b18a-d6894b5a9001.rna_seq.chimeric.gdc_realn.bam 191611105 BAM chimeric harmonized CPTAC3 e5edbb26-f58c-4f7a-9237-d3419f9dcf0c 7389959d029ad21ae850853024d90946 { 'aliquot_tag': 'ALQ_66cf8d0e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02163.RNA-Seq.genomic.A.hg38 C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 f33d8651-887e-48b2-9eca-e179956a6372.rna_seq.genomic.gdc_realn.bam 9287726953 BAM genomic harmonized CPTAC3 33a43428-2137-4ecd-827f-ce9af4dc181e 0ac72d10078941c8b578748b7fb633ab { 'aliquot_tag': 'ALQ_6a81f391', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02163.RNA-Seq.genomic.T.hg38 C3L-02163 LSCC RNA-Seq tumor CPT0175120013 c680994d-c101-4d43-b18a-d6894b5a9001.rna_seq.genomic.gdc_realn.bam 8867089698 BAM genomic harmonized CPTAC3 f9bd1e9b-8eac-425e-8a21-f3ca91531f17 6c6052af004092ff2c805e9859b5a2a7 { 'aliquot_tag': 'ALQ_66cf8d0e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02163.RNA-Seq.R1_L001.A C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4325631110 FASTQ R1_L001 unaligned CPTAC3 9749e6bc-0bb0-40c9-aec9-faa83eeac92e f78749892d0b5d66e3fac0ee6b629a6f { 'aliquot_tag': 'ALQ_6a81f391', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02163.RNA-Seq.R1_L005.T C3L-02163 LSCC RNA-Seq tumor CPT0175120013 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTTCC_S24_L005_R1_001.fastq.gz 4308966579 FASTQ R1_L005 unaligned CPTAC3 3978c40c-51ea-4f84-94e7-a6d7f60e9a95 67659cab75c0e85a419c86248d8c8258 { 'aliquot_tag': 'ALQ_66cf8d0e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02163.RNA-Seq.R2_L001.A C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L001_R2_001.fastq.gz 4820026408 FASTQ R2_L001 unaligned CPTAC3 98e55f73-432c-421b-b9b6-10ed1c73806e 96755a9a0730e043a618b62a09ce3eef { 'aliquot_tag': 'ALQ_6a81f391', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02163.RNA-Seq.R2_L005.T C3L-02163 LSCC RNA-Seq tumor CPT0175120013 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTTCC_S24_L005_R2_001.fastq.gz 4496269577 FASTQ R2_L005 unaligned CPTAC3 3a1d8ee4-8c8c-410d-8e7a-326284afefb7 3d6d33c909bf7a948a8d876f86bef035 { 'aliquot_tag': 'ALQ_66cf8d0e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02163.RNA-Seq.genomic.A.hg38 C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 f33d8651-887e-48b2-9eca-e179956a6372.rna_seq.genomic.gdc_realn.bam 9287726953 BAM genomic harmonized CPTAC3 3b32a10e-cf2d-448f-859c-d2e8965d0f4e 0ac72d10078941c8b578748b7fb633ab { 'aliquot_tag': 'ALQ_6a81f391', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02163.RNA-Seq.genomic.T.hg38 C3L-02163 LSCC RNA-Seq tumor CPT0175120013 c680994d-c101-4d43-b18a-d6894b5a9001.rna_seq.genomic.gdc_realn.bam 8867089698 BAM genomic harmonized CPTAC3 c7cd03e6-ce7a-4510-b2c0-427753fe00b3 6c6052af004092ff2c805e9859b5a2a7 { 'aliquot_tag': 'ALQ_66cf8d0e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02163.RNA-Seq.R1_L001.A C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4325631110 FASTQ R1_L001 unaligned CPTAC3 9749e6bc-0bb0-40c9-aec9-faa83eeac92e f78749892d0b5d66e3fac0ee6b629a6f { 'aliquot_tag': 'ALQ_6a81f391', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-02163.RNA-Seq.R1_L005.T C3L-02163 LSCC RNA-Seq tumor CPT0175120013 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTTCC_S24_L005_R1_001.fastq.gz 4308966579 FASTQ R1_L005 unaligned CPTAC3 3978c40c-51ea-4f84-94e7-a6d7f60e9a95 67659cab75c0e85a419c86248d8c8258 { 'aliquot_tag': 'ALQ_66cf8d0e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02163.RNA-Seq.R2_L001.A C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L001_R2_001.fastq.gz 4820026408 FASTQ R2_L001 unaligned CPTAC3 98e55f73-432c-421b-b9b6-10ed1c73806e 96755a9a0730e043a618b62a09ce3eef { 'aliquot_tag': 'ALQ_6a81f391', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-02163.RNA-Seq.R2_L005.T C3L-02163 LSCC RNA-Seq tumor CPT0175120013 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTTCC_S24_L005_R2_001.fastq.gz 4496269577 FASTQ R2_L005 unaligned CPTAC3 3a1d8ee4-8c8c-410d-8e7a-326284afefb7 3d6d33c909bf7a948a8d876f86bef035 { 'aliquot_tag': 'ALQ_66cf8d0e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-02163.RNA-Seq.transcriptome.A.hg38 C3L-02163 LSCC RNA-Seq tissue_normal CPT0175160009 f33d8651-887e-48b2-9eca-e179956a6372.rna_seq.transcriptome.gdc_realn.bam 12006645997 BAM transcriptome harmonized CPTAC3 71c3220a-0b5e-423e-af9b-c72914b10ac7 4df542983cde56d5d64b5f321f1bfb9b { 'aliquot_tag': 'ALQ_6a81f391', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02163.RNA-Seq.transcriptome.T.hg38 C3L-02163 LSCC RNA-Seq tumor CPT0175120013 c680994d-c101-4d43-b18a-d6894b5a9001.rna_seq.transcriptome.gdc_realn.bam 11874627262 BAM transcriptome harmonized CPTAC3 ec6387a8-12d7-4e7a-b4b9-5cdc39641bd3 b9492082a81f1b21f6599c820e40f24c { 'aliquot_tag': 'ALQ_66cf8d0e', 'gdc_sample_type': 'Primary Tumor' } C3L-02163.WGS.A C3L-02163 LSCC WGS tissue_normal CPT0175160006 CPT0175160006.WholeGenome.RP-1303.bam 61915495832 BAM aligned CPTAC3 77257365-8bef-4cf4-8f44-bbcccf5885a6 674dcd51a62964f7c19af9ae74d93d55 { 'aliquot_tag': 'ALQ_fa3eee00', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -9424,12 +10135,12 @@ C3L-02164.miRNA-Seq.T C3L-02164 LSCC miRNA-Seq tumor CPT0175260013 181219_UNC31- C3L-02164.miRNA-Seq.T.hg38 C3L-02164 LSCC miRNA-Seq tumor CPT0175260013 d357793b-6382-4880-822a-2b87596cdde2_mirnaseq_gdc_realn.bam 271331585 BAM harmonized CPTAC3 adb38205-caa8-40f5-9d76-3773ad2f8ba0 1309d14d413b8df26d87218254b0608a { 'aliquot_tag': 'ALQ_15db5960', 'gdc_sample_type': 'Primary Tumor' } C3L-02164.RNA-Seq.chimeric.A.hg38 C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 808dc483-e422-49db-b1c3-eb41775169b9.rna_seq.chimeric.gdc_realn.bam 132940541 BAM chimeric harmonized CPTAC3 c2f3a0df-3293-4da8-ac4c-c27f62c79cc3 ec06fd26e2fa111edc207ec3349fc1a9 { 'aliquot_tag': 'ALQ_d175a88f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02164.RNA-Seq.chimeric.T.hg38 C3L-02164 LSCC RNA-Seq tumor CPT0175260013 765aedc7-d9ec-47fa-803e-14efefa026d3.rna_seq.chimeric.gdc_realn.bam 178709267 BAM chimeric harmonized CPTAC3 623980c6-df8d-4e77-afbd-e3360b35f808 fe155a2590fd3e55a12613f041edaad4 { 'aliquot_tag': 'ALQ_15db5960', 'gdc_sample_type': 'Primary Tumor' } -C3L-02164.RNA-Seq.genomic.A.hg38 C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 808dc483-e422-49db-b1c3-eb41775169b9.rna_seq.genomic.gdc_realn.bam 7574148616 BAM genomic harmonized CPTAC3 f2ddde6c-ab10-4bf8-8567-b4396ff43be1 7af90bdd78ec70a2bb835116f4119adb { 'aliquot_tag': 'ALQ_d175a88f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02164.RNA-Seq.genomic.T.hg38 C3L-02164 LSCC RNA-Seq tumor CPT0175260013 765aedc7-d9ec-47fa-803e-14efefa026d3.rna_seq.genomic.gdc_realn.bam 7431342183 BAM genomic harmonized CPTAC3 ad73ee04-731f-4619-92ae-01786829d048 8a3962f16e9251a3af4372728b62003d { 'aliquot_tag': 'ALQ_15db5960', 'gdc_sample_type': 'Primary Tumor' } -C3L-02164.RNA-Seq.R1_L001.A C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L001_R1_001.fastq.gz 3293880473 FASTQ R1_L001 unaligned CPTAC3 5a20c427-b058-4d28-9b84-51370059f471 b62960e573bf7858bf3a9fe76fdb47f2 { 'aliquot_tag': 'ALQ_d175a88f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02164.RNA-Seq.R1_L005.T C3L-02164 LSCC RNA-Seq tumor CPT0175260013 181002_UNC31-K00269_0156_AHWN3HBBXX_ATGTCA_S23_L005_R1_001.fastq.gz 3310741921 FASTQ R1_L005 unaligned CPTAC3 d9804fb9-2750-416d-b1b0-01c6f143de0b a709da5a4d8148fd139322f8674e47bf { 'aliquot_tag': 'ALQ_15db5960', 'gdc_sample_type': 'Primary Tumor' } -C3L-02164.RNA-Seq.R2_L001.A C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L001_R2_001.fastq.gz 3661444261 FASTQ R2_L001 unaligned CPTAC3 0cc189c1-37d3-48bd-8efc-e679aecfcc1e e424c3f3a7ca72fee4b43118ba12b6f7 { 'aliquot_tag': 'ALQ_d175a88f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02164.RNA-Seq.R2_L005.T C3L-02164 LSCC RNA-Seq tumor CPT0175260013 181002_UNC31-K00269_0156_AHWN3HBBXX_ATGTCA_S23_L005_R2_001.fastq.gz 3506868826 FASTQ R2_L005 unaligned CPTAC3 0a0c4652-bdde-4f97-af4b-6b86e2484a39 ee74d83578e699e0034de85a7408276d { 'aliquot_tag': 'ALQ_15db5960', 'gdc_sample_type': 'Primary Tumor' } +C3L-02164.RNA-Seq.genomic.A.hg38 C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 808dc483-e422-49db-b1c3-eb41775169b9.rna_seq.genomic.gdc_realn.bam 7574148616 BAM genomic harmonized CPTAC3 96b0a63c-4d5d-4f80-8612-0686e6afc185 7af90bdd78ec70a2bb835116f4119adb { 'aliquot_tag': 'ALQ_d175a88f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02164.RNA-Seq.genomic.T.hg38 C3L-02164 LSCC RNA-Seq tumor CPT0175260013 765aedc7-d9ec-47fa-803e-14efefa026d3.rna_seq.genomic.gdc_realn.bam 7431342183 BAM genomic harmonized CPTAC3 d76210d6-f8f4-4892-b40e-1cb794c6166f 8a3962f16e9251a3af4372728b62003d { 'aliquot_tag': 'ALQ_15db5960', 'gdc_sample_type': 'Primary Tumor' } +C3L-02164.RNA-Seq.R1_L001.A C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L001_R1_001.fastq.gz 3293880473 FASTQ R1_L001 unaligned CPTAC3 5a20c427-b058-4d28-9b84-51370059f471 b62960e573bf7858bf3a9fe76fdb47f2 { 'aliquot_tag': 'ALQ_d175a88f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-02164.RNA-Seq.R1_L005.T C3L-02164 LSCC RNA-Seq tumor CPT0175260013 181002_UNC31-K00269_0156_AHWN3HBBXX_ATGTCA_S23_L005_R1_001.fastq.gz 3310741921 FASTQ R1_L005 unaligned CPTAC3 d9804fb9-2750-416d-b1b0-01c6f143de0b a709da5a4d8148fd139322f8674e47bf { 'aliquot_tag': 'ALQ_15db5960', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02164.RNA-Seq.R2_L001.A C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L001_R2_001.fastq.gz 3661444261 FASTQ R2_L001 unaligned CPTAC3 0cc189c1-37d3-48bd-8efc-e679aecfcc1e e424c3f3a7ca72fee4b43118ba12b6f7 { 'aliquot_tag': 'ALQ_d175a88f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-02164.RNA-Seq.R2_L005.T C3L-02164 LSCC RNA-Seq tumor CPT0175260013 181002_UNC31-K00269_0156_AHWN3HBBXX_ATGTCA_S23_L005_R2_001.fastq.gz 3506868826 FASTQ R2_L005 unaligned CPTAC3 0a0c4652-bdde-4f97-af4b-6b86e2484a39 ee74d83578e699e0034de85a7408276d { 'aliquot_tag': 'ALQ_15db5960', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-02164.RNA-Seq.transcriptome.A.hg38 C3L-02164 LSCC RNA-Seq tissue_normal CPT0175270009 808dc483-e422-49db-b1c3-eb41775169b9.rna_seq.transcriptome.gdc_realn.bam 9162308031 BAM transcriptome harmonized CPTAC3 9d0bc382-57d1-41cf-98c2-8730b58e04bb a87ef2df607aeefdca46011bc5278331 { 'aliquot_tag': 'ALQ_d175a88f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02164.RNA-Seq.transcriptome.T.hg38 C3L-02164 LSCC RNA-Seq tumor CPT0175260013 765aedc7-d9ec-47fa-803e-14efefa026d3.rna_seq.transcriptome.gdc_realn.bam 9068183320 BAM transcriptome harmonized CPTAC3 e95f9400-8196-48f9-95f6-11880f50b947 e8f7e2afde61162b3c610371dd9958d1 { 'aliquot_tag': 'ALQ_15db5960', 'gdc_sample_type': 'Primary Tumor' } C3L-02164.WGS.A C3L-02164 LSCC WGS tissue_normal CPT0175270006 CPT0175270006.WholeGenome.RP-1303.bam 62155856068 BAM aligned CPTAC3 a74ab8df-51cb-4b7f-84b7-50115a6ee025 d2344c9e90038afdba7431635cd9114c { 'aliquot_tag': 'ALQ_41cab51e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -9452,16 +10163,16 @@ C3L-02165.miRNA-Seq.A C3L-02165 LUAD miRNA-Seq tissue_normal CPT0129940009 19013 C3L-02165.miRNA-Seq.A.hg38 C3L-02165 LUAD miRNA-Seq tissue_normal CPT0129940009 30b02e0d-b1f9-4419-a153-3e9087a82090_mirnaseq_gdc_realn.bam 199642953 BAM harmonized CPTAC3 14a6447b-6a33-4713-8220-00a360b13acc 1c0f6174eb105684658cca032086532b { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02165.miRNA-Seq.T C3L-02165 LUAD miRNA-Seq tumor CPT0129910009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTCCGC_S19_L006_R1_001.unaln.bam 174157669 BAM unaligned CPTAC3 6c23d7f0-b677-4bda-9fa3-7909475e8d4f cab94c6fdc35f1bc1e0e78b5edb824be { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor' } C3L-02165.miRNA-Seq.T.hg38 C3L-02165 LUAD miRNA-Seq tumor CPT0129910009 9c3f3ec6-c919-45e6-bc16-7c4387bdf0ff_mirnaseq_gdc_realn.bam 191509412 BAM harmonized CPTAC3 805a564e-ef66-4cf3-b656-94611e681817 08879db9bcc422b92d6be12c0fc90b67 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02165.RNA-Seq.chimeric.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 13791edb-b878-45f6-bb3d-510d0a5f1e95.rna_seq.chimeric.gdc_realn.bam 33377479 BAM chimeric harmonized CPTAC3 efff4586-a0fb-472d-a4b4-316ed2ded3ad aa16d0b7c722be14861011852e5e900a { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02165.RNA-Seq.chimeric.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 753fadf0-1a8b-495f-9257-9c4f364ef180.rna_seq.chimeric.gdc_realn.bam 33802158 BAM chimeric harmonized CPTAC3 710b69bc-cfdd-458a-8cfe-d2837122d7da 737f53ca3f478a87f80b93dafd91c870 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02165.RNA-Seq.genomic.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 13791edb-b878-45f6-bb3d-510d0a5f1e95.rna_seq.genomic.gdc_realn.bam 7645020007 BAM genomic harmonized CPTAC3 ef4cdaac-b547-41f4-a2ed-9d9f0c745531 b46a43d8406a84245fb6c6b617c266c7 { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02165.RNA-Seq.genomic.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 753fadf0-1a8b-495f-9257-9c4f364ef180.rna_seq.genomic.gdc_realn.bam 8930645129 BAM genomic harmonized CPTAC3 cd8e748b-1099-41b1-babe-8c14f7f54f52 a0cf2f5e9a0601a6584adfd6bc14b086 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02165.RNA-Seq.R1_L002.A C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L002_R1_001.fastq.gz 3522872141 FASTQ R1_L002 unaligned CPTAC3 6ffc1beb-76ec-4351-a24a-e6f6f0e29245 8d979c64d1092ae09dc7205c6b5869dd { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02165.RNA-Seq.R1_L005.T C3L-02165 LUAD RNA-Seq tumor CPT0129910009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L005_R1_001.fastq.gz 3947914233 FASTQ R1_L005 unaligned CPTAC3 8857b412-d9ef-4375-b15d-7700b63e8f4c 5527505aa9f6c5d8e6bbfe0fb535e123 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02165.RNA-Seq.R2_L002.A C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L002_R2_001.fastq.gz 3714726213 FASTQ R2_L002 unaligned CPTAC3 6152441d-aa4d-4192-a405-87efbadfd169 d9a30b01f6bcd1aa2f55de1301f0304d { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02165.RNA-Seq.R2_L005.T C3L-02165 LUAD RNA-Seq tumor CPT0129910009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L005_R2_001.fastq.gz 4055843633 FASTQ R2_L005 unaligned CPTAC3 e99cae96-be04-4b4f-b22a-0a2691cf4fc5 10cb3fb1d26223b9ed1198c6d8d01fa3 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02165.RNA-Seq.transcriptome.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 13791edb-b878-45f6-bb3d-510d0a5f1e95.rna_seq.transcriptome.gdc_realn.bam 9298049120 BAM transcriptome harmonized CPTAC3 a04dcf25-20a8-4269-a826-3739de191e75 7f9630e88cba7e3706d916583e1c3209 { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02165.RNA-Seq.transcriptome.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 753fadf0-1a8b-495f-9257-9c4f364ef180.rna_seq.transcriptome.gdc_realn.bam 8651750209 BAM transcriptome harmonized CPTAC3 8363cfee-c0b0-4c7f-9e6d-430b0ab242e0 dd2dc3abcfc7d17a55659412de13d830 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02165.RNA-Seq.chimeric.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 b2440ce8-91d7-427e-a1f0-1b71257156f8.rna_seq.chimeric.gdc_realn.bam 33366406 BAM chimeric harmonized CPTAC3 4573db0d-2895-471b-be98-b330979d2e0a a37ca9ee7e118cdc8c0dd105e35ed9f9 { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02165.RNA-Seq.chimeric.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 5154f42c-d4fa-4691-bd5a-e4ff03ce8d14.rna_seq.chimeric.gdc_realn.bam 33810634 BAM chimeric harmonized CPTAC3 9c96e594-c986-4596-9066-0199ed3e6670 2395e476591588fe185a10fb98a6aa36 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02165.RNA-Seq.genomic.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 b2440ce8-91d7-427e-a1f0-1b71257156f8.rna_seq.genomic.gdc_realn.bam 7646602407 BAM genomic harmonized CPTAC3 c92d10fa-dd65-4a06-9e71-940991cc1d8d 02bafa17632bfc2126220c1cde20cc2d { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02165.RNA-Seq.genomic.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 5154f42c-d4fa-4691-bd5a-e4ff03ce8d14.rna_seq.genomic.gdc_realn.bam 8932270188 BAM genomic harmonized CPTAC3 3cea45ec-98a7-4451-88b8-95a467af9cf5 c2f7d9da664caa8c43e292a04162f663 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02165.RNA-Seq.R1_L002.A C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L002_R1_001.fastq.gz 3522872141 FASTQ R1_L002 unaligned CPTAC3 6ffc1beb-76ec-4351-a24a-e6f6f0e29245 8d979c64d1092ae09dc7205c6b5869dd { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-02165.RNA-Seq.R1_L005.T C3L-02165 LUAD RNA-Seq tumor CPT0129910009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L005_R1_001.fastq.gz 3947914233 FASTQ R1_L005 unaligned CPTAC3 8857b412-d9ef-4375-b15d-7700b63e8f4c 5527505aa9f6c5d8e6bbfe0fb535e123 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02165.RNA-Seq.R2_L002.A C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L002_R2_001.fastq.gz 3714726213 FASTQ R2_L002 unaligned CPTAC3 6152441d-aa4d-4192-a405-87efbadfd169 d9a30b01f6bcd1aa2f55de1301f0304d { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-02165.RNA-Seq.R2_L005.T C3L-02165 LUAD RNA-Seq tumor CPT0129910009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L005_R2_001.fastq.gz 4055843633 FASTQ R2_L005 unaligned CPTAC3 e99cae96-be04-4b4f-b22a-0a2691cf4fc5 10cb3fb1d26223b9ed1198c6d8d01fa3 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-02165.RNA-Seq.transcriptome.A.hg38 C3L-02165 LUAD RNA-Seq tissue_normal CPT0129940009 b2440ce8-91d7-427e-a1f0-1b71257156f8.rna_seq.transcriptome.gdc_realn.bam 10537743869 BAM transcriptome harmonized CPTAC3 11d96ff4-c466-4151-9123-dfe92ae3dda4 16b1a59ea0ea701b70f73b454ebe2dd1 { 'aliquot_tag': 'ALQ_7352468c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02165.RNA-Seq.transcriptome.T.hg38 C3L-02165 LUAD RNA-Seq tumor CPT0129910009 5154f42c-d4fa-4691-bd5a-e4ff03ce8d14.rna_seq.transcriptome.gdc_realn.bam 9615734135 BAM transcriptome harmonized CPTAC3 106224cf-fffb-4bbe-8fc9-e0642091e8a5 97c4950a7c744dd84de9f3caced250b4 { 'aliquot_tag': 'ALQ_bbb2c9fc', 'gdc_sample_type': 'Primary Tumor' } C3L-02165.WGS.A C3L-02165 LUAD WGS tissue_normal CPT0129940006 CPT0129940006.WholeGenome.RP-1303.bam 59487889443 BAM aligned CPTAC3 398840b5-e9ef-40de-87ee-837549618893 4617728254055fc423315df48ed5a91c { 'aliquot_tag': 'ALQ_e3ed5b1d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02165.WGS.A.hg38 C3L-02165 LUAD WGS tissue_normal CPT0129940006 ba1cc750-8ff6-46bf-ae81-ce29d02f518f_wgs_gdc_realn.bam 86663973046 BAM harmonized CPTAC3 8add41f7-6199-4743-b699-2d1ae230455d 123f607c8a858bbbd1d975f29c1f6a76 { 'aliquot_tag': 'ALQ_e3ed5b1d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02165.WGS.N C3L-02165 LUAD WGS blood_normal CPT0130010002 CPT0130010002.WholeGenome.RP-1303.bam 54608956474 BAM aligned CPTAC3 d5eaadc8-cd10-476d-abf7-78b4e45d16ae 352809af870f26820f9e757ee817cc69 { 'aliquot_tag': 'ALQ_525d04f1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9484,12 +10195,12 @@ C3L-02168.miRNA-Seq.T C3L-02168 LSCC miRNA-Seq tumor CPT0175390009 181219_UNC31- C3L-02168.miRNA-Seq.T.hg38 C3L-02168 LSCC miRNA-Seq tumor CPT0175390009 45b5f7a8-e4f8-402a-aa60-af007a178911_mirnaseq_gdc_realn.bam 245275324 BAM harmonized CPTAC3 0d96bbe2-66c2-4713-a6f7-22389653e7d7 ca6c661939578839bc3a7ee80d29d240 { 'aliquot_tag': 'ALQ_a519c54b', 'gdc_sample_type': 'Primary Tumor' } C3L-02168.RNA-Seq.chimeric.A.hg38 C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 fbe1e475-3dea-4c49-927c-fb101ecbb154.rna_seq.chimeric.gdc_realn.bam 34315856 BAM chimeric harmonized CPTAC3 6831c6ea-d6ba-4105-a7e1-529cb7c80989 1426225f7f745f30c35908c23b0216a0 { 'aliquot_tag': 'ALQ_886cbe32', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02168.RNA-Seq.chimeric.T.hg38 C3L-02168 LSCC RNA-Seq tumor CPT0175390009 50fc9fc4-d7e7-4398-9dc6-e41e3f628ef4.rna_seq.chimeric.gdc_realn.bam 30954593 BAM chimeric harmonized CPTAC3 7fe9eb44-8a60-4d6c-8cc6-fe21f6c0c60d c94be8adb5892a548f67dd540c4ee29b { 'aliquot_tag': 'ALQ_a519c54b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02168.RNA-Seq.genomic.A.hg38 C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 fbe1e475-3dea-4c49-927c-fb101ecbb154.rna_seq.genomic.gdc_realn.bam 9241772687 BAM genomic harmonized CPTAC3 838172a4-98c0-438b-8a32-6e0b320fbc50 e498e71d6a4e1c4a0ff2eecd2c5c20af { 'aliquot_tag': 'ALQ_886cbe32', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02168.RNA-Seq.genomic.T.hg38 C3L-02168 LSCC RNA-Seq tumor CPT0175390009 50fc9fc4-d7e7-4398-9dc6-e41e3f628ef4.rna_seq.genomic.gdc_realn.bam 8935052837 BAM genomic harmonized CPTAC3 aa31ba05-6f0d-4ec1-842d-cb5ff9c4ded5 0a7badb0b3e56d8261c84177e350db4b { 'aliquot_tag': 'ALQ_a519c54b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02168.RNA-Seq.R1_L002.A C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 4475051354 FASTQ R1_L002 unaligned CPTAC3 2fc3a64e-f1ec-4d8c-a37e-f0e9b9c72dad 47c7f3cccf8accbb21dd1f079fcbe0d4 { 'aliquot_tag': 'ALQ_886cbe32', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02168.RNA-Seq.R1_L008.T C3L-02168 LSCC RNA-Seq tumor CPT0175390009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4109780635 FASTQ R1_L008 unaligned CPTAC3 a1ba4506-e692-4cab-ad3c-35743423bd0f 4b01a8a7eac87e8412656b9b87455c1c { 'aliquot_tag': 'ALQ_a519c54b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02168.RNA-Seq.R2_L002.A C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4776309378 FASTQ R2_L002 unaligned CPTAC3 8e8bbb4b-680a-4b55-96f5-9d29a667fce9 28484f010c0161a2b7df9611df4aa1ae { 'aliquot_tag': 'ALQ_886cbe32', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02168.RNA-Seq.R2_L008.T C3L-02168 LSCC RNA-Seq tumor CPT0175390009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4242617728 FASTQ R2_L008 unaligned CPTAC3 0c6c6156-47e4-4738-9203-195cb585064c 94eb53844c6639aa23d72d7428773450 { 'aliquot_tag': 'ALQ_a519c54b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02168.RNA-Seq.genomic.A.hg38 C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 fbe1e475-3dea-4c49-927c-fb101ecbb154.rna_seq.genomic.gdc_realn.bam 9241772687 BAM genomic harmonized CPTAC3 20031b39-aacf-4dec-b610-09238b907877 e498e71d6a4e1c4a0ff2eecd2c5c20af { 'aliquot_tag': 'ALQ_886cbe32', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02168.RNA-Seq.genomic.T.hg38 C3L-02168 LSCC RNA-Seq tumor CPT0175390009 50fc9fc4-d7e7-4398-9dc6-e41e3f628ef4.rna_seq.genomic.gdc_realn.bam 8935052837 BAM genomic harmonized CPTAC3 110298b8-ece4-4a62-aee1-42db054163c2 0a7badb0b3e56d8261c84177e350db4b { 'aliquot_tag': 'ALQ_a519c54b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02168.RNA-Seq.R1_L002.A C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L002_R1_001.fastq.gz 4475051354 FASTQ R1_L002 unaligned CPTAC3 2fc3a64e-f1ec-4d8c-a37e-f0e9b9c72dad 47c7f3cccf8accbb21dd1f079fcbe0d4 { 'aliquot_tag': 'ALQ_886cbe32', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-02168.RNA-Seq.R1_L008.T C3L-02168 LSCC RNA-Seq tumor CPT0175390009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4109780635 FASTQ R1_L008 unaligned CPTAC3 a1ba4506-e692-4cab-ad3c-35743423bd0f 4b01a8a7eac87e8412656b9b87455c1c { 'aliquot_tag': 'ALQ_a519c54b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02168.RNA-Seq.R2_L002.A C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L002_R2_001.fastq.gz 4776309378 FASTQ R2_L002 unaligned CPTAC3 8e8bbb4b-680a-4b55-96f5-9d29a667fce9 28484f010c0161a2b7df9611df4aa1ae { 'aliquot_tag': 'ALQ_886cbe32', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-02168.RNA-Seq.R2_L008.T C3L-02168 LSCC RNA-Seq tumor CPT0175390009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4242617728 FASTQ R2_L008 unaligned CPTAC3 0c6c6156-47e4-4738-9203-195cb585064c 94eb53844c6639aa23d72d7428773450 { 'aliquot_tag': 'ALQ_a519c54b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-02168.RNA-Seq.transcriptome.A.hg38 C3L-02168 LSCC RNA-Seq tissue_normal CPT0175410009 fbe1e475-3dea-4c49-927c-fb101ecbb154.rna_seq.transcriptome.gdc_realn.bam 11790388632 BAM transcriptome harmonized CPTAC3 0dbd5545-6be1-4ea8-b075-ae56c44f546a 949fb45fbf3362ba3beffde71569a230 { 'aliquot_tag': 'ALQ_886cbe32', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02168.RNA-Seq.transcriptome.T.hg38 C3L-02168 LSCC RNA-Seq tumor CPT0175390009 50fc9fc4-d7e7-4398-9dc6-e41e3f628ef4.rna_seq.transcriptome.gdc_realn.bam 11019878459 BAM transcriptome harmonized CPTAC3 2b716955-2d9e-44fa-a3cc-5aa3c44d286d 4a025239fb9515024f3d2f7e8cad813a { 'aliquot_tag': 'ALQ_a519c54b', 'gdc_sample_type': 'Primary Tumor' } C3L-02168.WGS.A C3L-02168 LSCC WGS tissue_normal CPT0175410006 CPT0175410006.WholeGenome.RP-1303.bam 56370341457 BAM aligned CPTAC3 6c105c2e-6647-48d7-8504-e44654c47a93 19d947dc61e4c938062c227de0729e89 { 'aliquot_tag': 'ALQ_18d3a3a3', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -9512,16 +10223,16 @@ C3L-02169.miRNA-Seq.A C3L-02169 LUAD miRNA-Seq tissue_normal CPT0175710009 19013 C3L-02169.miRNA-Seq.A.hg38 C3L-02169 LUAD miRNA-Seq tissue_normal CPT0175710009 63054a39-2f87-4083-8b2f-c83604062cf1_mirnaseq_gdc_realn.bam 292412084 BAM harmonized CPTAC3 356ed667-cc07-4e59-83d1-44c8c51500d6 f832bf5e582d5edf925f38fc86083366 { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02169.miRNA-Seq.T C3L-02169 LUAD miRNA-Seq tumor CPT0175660009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGAAA_S20_L006_R1_001.unaln.bam 172889673 BAM unaligned CPTAC3 aa2df2e4-ef1d-4120-8d60-a4eb2bed9a2b 5d6c6a3a7e708fdadf1510cfe2516ae1 { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor' } C3L-02169.miRNA-Seq.T.hg38 C3L-02169 LUAD miRNA-Seq tumor CPT0175660009 e1fe640d-55b6-4bcd-86c2-50d232fe0726_mirnaseq_gdc_realn.bam 189579694 BAM harmonized CPTAC3 6fa879b3-b6a9-4e7c-820c-52f165879198 e2d599e0d14527496e65c56b89d65016 { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor' } -C3L-02169.RNA-Seq.chimeric.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 c5d4c0ef-f1f3-4877-bbcc-527fffbf2000.rna_seq.chimeric.gdc_realn.bam 404735442 BAM chimeric harmonized CPTAC3 6d760fe2-9e2b-442f-954c-ddab56a9991f 8607101da301037c3c36dea4030d729b { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02169.RNA-Seq.chimeric.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 09afcf98-f909-4dbd-a42b-e9abb8adf290.rna_seq.chimeric.gdc_realn.bam 45345043 BAM chimeric harmonized CPTAC3 3d2f458b-67f6-4816-a859-ff8030f7b1c9 a4b864d9702a97d45b2fe6cf8dc510ac { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor' } -C3L-02169.RNA-Seq.genomic.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 c5d4c0ef-f1f3-4877-bbcc-527fffbf2000.rna_seq.genomic.gdc_realn.bam 7044482493 BAM genomic harmonized CPTAC3 5784f94d-0730-4321-88ea-6d6a8a39504a 7a9be80609a9f6724c476bee350e10bb { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02169.RNA-Seq.genomic.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 09afcf98-f909-4dbd-a42b-e9abb8adf290.rna_seq.genomic.gdc_realn.bam 8820215693 BAM genomic harmonized CPTAC3 d0ac81af-f051-40ca-ac48-fcb25044aacf 4b86bdc6a7337e513d9ed67c913a6bd2 { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor' } -C3L-02169.RNA-Seq.R1_L004.A C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L004_R1_001.fastq.gz 3137684503 FASTQ R1_L004 unaligned CPTAC3 3a6178ab-bb41-49a3-a5dd-0a91c49505e2 d9a8ddd0b95c2e5af2f82c541016db19 { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02169.RNA-Seq.R1_L004.T C3L-02169 LUAD RNA-Seq tumor CPT0175660009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L004_R1_001.fastq.gz 3904697322 FASTQ R1_L004 unaligned CPTAC3 db7050c8-7eb4-4739-a7d6-9b941c0b0425 40366141b7ea3a541df3d6706a572869 { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor' } -C3L-02169.RNA-Seq.R2_L004.A C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L004_R2_001.fastq.gz 3376200871 FASTQ R2_L004 unaligned CPTAC3 4eecf64a-efc8-4396-a9e3-32f444812f64 9cacbad6323ea7a4a2750aec50fadff6 { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02169.RNA-Seq.R2_L004.T C3L-02169 LUAD RNA-Seq tumor CPT0175660009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L004_R2_001.fastq.gz 4385390689 FASTQ R2_L004 unaligned CPTAC3 faeae4e9-d05d-46ab-882a-e98f2771e6ed 9b1e24df10d401d81507e16adb00a414 { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor' } -C3L-02169.RNA-Seq.transcriptome.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 c5d4c0ef-f1f3-4877-bbcc-527fffbf2000.rna_seq.transcriptome.gdc_realn.bam 7106670662 BAM transcriptome harmonized CPTAC3 4b3a7666-1226-4109-9e89-4f666ffe3b52 d9ae5e360e87ed25ea2044254d8a500f { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02169.RNA-Seq.transcriptome.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 09afcf98-f909-4dbd-a42b-e9abb8adf290.rna_seq.transcriptome.gdc_realn.bam 9472658372 BAM transcriptome harmonized CPTAC3 93559358-d6e9-4fea-9427-7a32a419fb75 5a5a05bf6821bbbf9d5a862d9b8117ed { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor' } +C3L-02169.RNA-Seq.chimeric.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 fe4c3589-ea3f-4b92-a8b4-87c849f28ebd.rna_seq.chimeric.gdc_realn.bam 404685344 BAM chimeric harmonized CPTAC3 076fbae6-62de-4ac8-8852-5e54217a1136 321c2ea859a7aeba9d36f14c5d12c3cb { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02169.RNA-Seq.chimeric.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 f70d5df2-4fd2-4c57-a035-035f268d9034.rna_seq.chimeric.gdc_realn.bam 45352652 BAM chimeric harmonized CPTAC3 510cd053-d87f-4791-9342-41161cf2e8d7 afe8e7bec58f53422f50e98419fe261e { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor' } +C3L-02169.RNA-Seq.genomic.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 fe4c3589-ea3f-4b92-a8b4-87c849f28ebd.rna_seq.genomic.gdc_realn.bam 7045813099 BAM genomic harmonized CPTAC3 fd5e68c3-75e7-470d-ae91-8bd39d9955a2 5c9a03a40248af9af90830c6b222ddb3 { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02169.RNA-Seq.genomic.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 f70d5df2-4fd2-4c57-a035-035f268d9034.rna_seq.genomic.gdc_realn.bam 8822263905 BAM genomic harmonized CPTAC3 e99cd478-29bb-4568-a354-fa59c65803c0 6b0613314c44bf2d2dd340b6092a9b12 { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor' } +C3L-02169.RNA-Seq.R1_L004.A C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L004_R1_001.fastq.gz 3137684503 FASTQ R1_L004 unaligned CPTAC3 3a6178ab-bb41-49a3-a5dd-0a91c49505e2 d9a8ddd0b95c2e5af2f82c541016db19 { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02169.RNA-Seq.R1_L004.T C3L-02169 LUAD RNA-Seq tumor CPT0175660009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L004_R1_001.fastq.gz 3904697322 FASTQ R1_L004 unaligned CPTAC3 db7050c8-7eb4-4739-a7d6-9b941c0b0425 40366141b7ea3a541df3d6706a572869 { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02169.RNA-Seq.R2_L004.A C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L004_R2_001.fastq.gz 3376200871 FASTQ R2_L004 unaligned CPTAC3 4eecf64a-efc8-4396-a9e3-32f444812f64 9cacbad6323ea7a4a2750aec50fadff6 { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-02169.RNA-Seq.R2_L004.T C3L-02169 LUAD RNA-Seq tumor CPT0175660009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L004_R2_001.fastq.gz 4385390689 FASTQ R2_L004 unaligned CPTAC3 faeae4e9-d05d-46ab-882a-e98f2771e6ed 9b1e24df10d401d81507e16adb00a414 { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02169.RNA-Seq.transcriptome.A.hg38 C3L-02169 LUAD RNA-Seq tissue_normal CPT0175710009 fe4c3589-ea3f-4b92-a8b4-87c849f28ebd.rna_seq.transcriptome.gdc_realn.bam 8044393588 BAM transcriptome harmonized CPTAC3 0a5f8ff1-a4bc-4b50-89e6-b6cb0ed21a6b 2b1fe4e5545f21f25ad040521192da28 { 'aliquot_tag': 'ALQ_ef8cc9c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02169.RNA-Seq.transcriptome.T.hg38 C3L-02169 LUAD RNA-Seq tumor CPT0175660009 f70d5df2-4fd2-4c57-a035-035f268d9034.rna_seq.transcriptome.gdc_realn.bam 10591413909 BAM transcriptome harmonized CPTAC3 e1e71222-c787-4fbe-a15b-be7d1216702b b33c5495ca4018215fe14ea7aad256e9 { 'aliquot_tag': 'ALQ_7784c329', 'gdc_sample_type': 'Primary Tumor' } C3L-02169.WGS.A C3L-02169 LUAD WGS tissue_normal CPT0175710006 CPT0175710006.WholeGenome.RP-1303.bam 53372945797 BAM aligned CPTAC3 1477b884-c901-4002-b3ff-1514909d782b 8e197e06a7cef97f57c4f77a78a12b0f { 'aliquot_tag': 'ALQ_9e47d10d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02169.WGS.A.hg38 C3L-02169 LUAD WGS tissue_normal CPT0175710006 6dbeeb29-7bd3-4a25-b571-8e60b4655ceb_wgs_gdc_realn.bam 77303064830 BAM harmonized CPTAC3 d30c8364-c3e4-4b6a-bb15-fc82540939f3 49251dddb6773fb8c1efba4c0a295853 { 'aliquot_tag': 'ALQ_9e47d10d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02169.WGS.N C3L-02169 LUAD WGS blood_normal CPT0175780002 CPT0175780002.WholeGenome.RP-1303.bam 64451145950 BAM aligned CPTAC3 cd56bc76-d3d9-499a-8e2d-2d19089db42a 39509e72e8f08b780f912305ee28d532 { 'aliquot_tag': 'ALQ_943a7765', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9539,9 +10250,9 @@ C3L-02170.MethArray.Red.T C3L-02170 LSCC Methylation Array tumor CPT0175560006 2 C3L-02170.miRNA-Seq.T C3L-02170 LSCC miRNA-Seq tumor CPT0175560009 181219_UNC31-K00269_0173_BHYGJJBBXX_TCGGCA_S47_L002_R1_001.unaln.bam 225890635 BAM unaligned CPTAC3 f9c72fed-71a0-47cb-baea-3f490be268a2 8950a8c98666ef2e52be2938ee779dc5 { 'aliquot_tag': 'ALQ_f110b187', 'gdc_sample_type': 'Primary Tumor' } C3L-02170.miRNA-Seq.T.hg38 C3L-02170 LSCC miRNA-Seq tumor CPT0175560009 81dac0c4-0deb-4fda-b983-46cca868ae64_mirnaseq_gdc_realn.bam 243739839 BAM harmonized CPTAC3 903832cc-ca9e-4dfb-9e4a-16d6655e6813 ac21d7f53906ab28751d2cd4dc48b49b { 'aliquot_tag': 'ALQ_f110b187', 'gdc_sample_type': 'Primary Tumor' } C3L-02170.RNA-Seq.chimeric.T.hg38 C3L-02170 LSCC RNA-Seq tumor CPT0175560009 ffeda85e-d195-4340-88ca-6baf3d2830f8.rna_seq.chimeric.gdc_realn.bam 29188651 BAM chimeric harmonized CPTAC3 c2641f9b-f61c-4fbd-9119-480f9bde2cbb 677115d598a296b2f113d7e9f0368968 { 'aliquot_tag': 'ALQ_f110b187', 'gdc_sample_type': 'Primary Tumor' } -C3L-02170.RNA-Seq.genomic.T.hg38 C3L-02170 LSCC RNA-Seq tumor CPT0175560009 ffeda85e-d195-4340-88ca-6baf3d2830f8.rna_seq.genomic.gdc_realn.bam 9824460612 BAM genomic harmonized CPTAC3 d73b6032-513b-424c-a95f-f6e542da3ac0 ce990bc3935b9f6eeb78d2d3cdd8f47c { 'aliquot_tag': 'ALQ_f110b187', 'gdc_sample_type': 'Primary Tumor' } -C3L-02170.RNA-Seq.R1_L008.T C3L-02170 LSCC RNA-Seq tumor CPT0175560009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3934238485 FASTQ R1_L008 unaligned CPTAC3 e53eb452-b1c7-4424-92d6-63429ebb186b 4acf54573009b33e9857c7f8c5cd7e99 { 'aliquot_tag': 'ALQ_f110b187', 'gdc_sample_type': 'Primary Tumor' } -C3L-02170.RNA-Seq.R2_L008.T C3L-02170 LSCC RNA-Seq tumor CPT0175560009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4020225425 FASTQ R2_L008 unaligned CPTAC3 bb75192c-21f5-4972-bb3d-d966d7926373 c4e90d52bcf592cb14710073a73d918f { 'aliquot_tag': 'ALQ_f110b187', 'gdc_sample_type': 'Primary Tumor' } +C3L-02170.RNA-Seq.genomic.T.hg38 C3L-02170 LSCC RNA-Seq tumor CPT0175560009 ffeda85e-d195-4340-88ca-6baf3d2830f8.rna_seq.genomic.gdc_realn.bam 9824460612 BAM genomic harmonized CPTAC3 e78b0236-bb6b-4fbe-b8ee-c95c68cadf87 ce990bc3935b9f6eeb78d2d3cdd8f47c { 'aliquot_tag': 'ALQ_f110b187', 'gdc_sample_type': 'Primary Tumor' } +C3L-02170.RNA-Seq.R1_L008.T C3L-02170 LSCC RNA-Seq tumor CPT0175560009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3934238485 FASTQ R1_L008 unaligned CPTAC3 e53eb452-b1c7-4424-92d6-63429ebb186b 4acf54573009b33e9857c7f8c5cd7e99 { 'aliquot_tag': 'ALQ_f110b187', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02170.RNA-Seq.R2_L008.T C3L-02170 LSCC RNA-Seq tumor CPT0175560009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4020225425 FASTQ R2_L008 unaligned CPTAC3 bb75192c-21f5-4972-bb3d-d966d7926373 c4e90d52bcf592cb14710073a73d918f { 'aliquot_tag': 'ALQ_f110b187', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-02170.RNA-Seq.transcriptome.T.hg38 C3L-02170 LSCC RNA-Seq tumor CPT0175560009 ffeda85e-d195-4340-88ca-6baf3d2830f8.rna_seq.transcriptome.gdc_realn.bam 10631802089 BAM transcriptome harmonized CPTAC3 ff856745-6e31-4208-81e1-e23759dbfce9 446e68cf5f14bc5853ed550a91278c43 { 'aliquot_tag': 'ALQ_f110b187', 'gdc_sample_type': 'Primary Tumor' } C3L-02170.WGS.N C3L-02170 LSCC WGS blood_normal CPT0175640002 CPT0175640002.WholeGenome.RP-1303.bam 59532054822 BAM aligned CPTAC3 51eddac4-803a-45c3-a541-7292e23c2c93 cc9e32fd406c8ef7df242e8f7fee2486 { 'aliquot_tag': 'ALQ_9a9649c1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02170.WGS.N.hg38 C3L-02170 LSCC WGS blood_normal CPT0175640002 dd54f8e5-09cc-4925-86e5-797f029e52cb_wgs_gdc_realn.bam 86046076265 BAM harmonized CPTAC3 e7b0ff87-766c-4143-978f-f5f108948904 79de1566a1ee47628f19df1063caad4a { 'aliquot_tag': 'ALQ_9a9649c1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9559,11 +10270,11 @@ C3L-02175.ADD_d091988c.WXS.T C3L-02175 CCRCC WXS tumor CPT0100410009 CPT01004100 C3L-02175.ADD_d091988c.WXS.T.hg38 C3L-02175 CCRCC WXS tumor CPT0100410009 573d770d-55a6-413b-874b-444f2bff1b31_wxs_gdc_realn.bam 47301558950 BAM harmonized CPTAC3 3e4b4d1b-be24-459c-8fcf-1e464a8912df d07d5032e89fa2ba0e5d959fad934ef2 { 'aliquot_tag': 'ADD_d091988c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional DNA requested ' } C3L-02175.miRNA-Seq.T C3L-02175 CCRCC miRNA-Seq tumor CPT0100410006 180828_UNC32-K00270_0112_AHWTLNBBXX_ACTGAT_S25_L007_R1_001.unaln.bam 342586292 BAM unaligned CPTAC3 211c7236-a41f-4447-a5bf-b9567bf60077 6737ad8177d768f81ce3df2c97afb267 { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor' } C3L-02175.miRNA-Seq.T.hg38 C3L-02175 CCRCC miRNA-Seq tumor CPT0100410006 b2cf64ca-e527-4ca1-95be-a369faefa578_mirnaseq_gdc_realn.bam 384369823 BAM harmonized CPTAC3 29720da5-ae6c-4636-a1e6-ed6e59aa118b 2bc4fc41ac0318013f69c84c0cf2bc87 { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02175.RNA-Seq.chimeric.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 8e171396-fc55-4261-89f2-b9268f2c91d3.rna_seq.chimeric.gdc_realn.bam 42539047 BAM chimeric harmonized CPTAC3 599c4076-a675-4e8e-a37c-0c45c5240f66 e09b6f4fa38e1ef3dda42f3285f66a82 { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02175.RNA-Seq.genomic.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 8e171396-fc55-4261-89f2-b9268f2c91d3.rna_seq.genomic.gdc_realn.bam 10162726833 BAM genomic harmonized CPTAC3 19d27f6f-c7de-4d0a-be1d-63c0b642a6cd b195be6bb9f0cd599dcfc2a848c326df { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02175.RNA-Seq.R1_L004.T C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATCACG_S14_L004_R1_001.fastq.gz 4822180343 FASTQ R1_L004 unaligned CPTAC3 a55f0bfd-eb7d-40d3-864a-dc8c6831a87d b5dd0b7dced9a6a7e6c1087827eb639b { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02175.RNA-Seq.R2_L004.T C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATCACG_S14_L004_R2_001.fastq.gz 4808988017 FASTQ R2_L004 unaligned CPTAC3 c95e7cc3-6d00-4afc-8981-c0b140015d31 3798258741223f60fa284741b8cf23d1 { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02175.RNA-Seq.transcriptome.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 8e171396-fc55-4261-89f2-b9268f2c91d3.rna_seq.transcriptome.gdc_realn.bam 9632835285 BAM transcriptome harmonized CPTAC3 1b1371c2-efcf-4f7b-888d-95a3c45cbe07 fe4414c10492326049bf1e6260efe134 { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02175.RNA-Seq.chimeric.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 04841038-f7ec-448e-8962-31df32dda3fc.rna_seq.chimeric.gdc_realn.bam 42517230 BAM chimeric harmonized CPTAC3 ee4f0929-aaf5-4d93-aeb7-1dd934681ea8 a7999b02a6dad3e63a8f716d2f193d1f { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02175.RNA-Seq.genomic.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 04841038-f7ec-448e-8962-31df32dda3fc.rna_seq.genomic.gdc_realn.bam 10163917859 BAM genomic harmonized CPTAC3 8d9297a4-6bbc-41e5-95ac-28f32ff0bdc0 5146f746f96af47af4f38aa50235cde3 { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02175.RNA-Seq.R1_L004.T C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATCACG_S14_L004_R1_001.fastq.gz 4822180343 FASTQ R1_L004 unaligned CPTAC3 a55f0bfd-eb7d-40d3-864a-dc8c6831a87d b5dd0b7dced9a6a7e6c1087827eb639b { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02175.RNA-Seq.R2_L004.T C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATCACG_S14_L004_R2_001.fastq.gz 4808988017 FASTQ R2_L004 unaligned CPTAC3 c95e7cc3-6d00-4afc-8981-c0b140015d31 3798258741223f60fa284741b8cf23d1 { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02175.RNA-Seq.transcriptome.T.hg38 C3L-02175 CCRCC RNA-Seq tumor CPT0100410006 04841038-f7ec-448e-8962-31df32dda3fc.rna_seq.transcriptome.gdc_realn.bam 10911565485 BAM transcriptome harmonized CPTAC3 cb9da0e6-3367-4780-987e-7bc9389223a2 d7f1adbaa6d53735236edb9abe8f0888 { 'aliquot_tag': 'ALQ_402e851d', 'gdc_sample_type': 'Primary Tumor' } C3L-02175.WGS.N C3L-02175 CCRCC WGS blood_normal CPT0101930002 CPT0101930002.WholeGenome.RP-1303.bam 66291160337 BAM aligned CPTAC3 fb934f0d-1915-4149-a67d-0bdd65fa6cb9 6fe20d0bc233be67453ec96e7496e725 { 'aliquot_tag': 'ALQ_276a0a0e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02175.WGS.N.hg38 C3L-02175 CCRCC WGS blood_normal CPT0101930002 6eadb488-015f-427c-8194-9709dff9facf_wgs_gdc_realn.bam 97648522008 BAM harmonized CPTAC3 0bff2363-4079-4835-9e0b-b698ece29edc cc0bfa8286f89a57eaa398108812d0cc { 'aliquot_tag': 'ALQ_276a0a0e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02175.WXS.N C3L-02175 CCRCC WXS blood_normal CPT0101930002 CPT0101930002.WholeExome.RP-1303.bam 30616433475 BAM aligned CPTAC3 d5784d20-2151-473f-8e4c-b7bf553217d3 4d1e45f9e7c6157fcafff0a3ef3b35f1 { 'aliquot_tag': 'ALQ_276a0a0e', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9572,11 +10283,11 @@ C3L-02176.MethArray.Green.T C3L-02176 CCRCC Methylation Array tumor CPT010047000 C3L-02176.MethArray.Red.T C3L-02176 CCRCC Methylation Array tumor CPT0100470008 202234380054_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 cc4a846f-04a4-444b-9cae-bb1be625df4a e1c577bfeda95a839efbcd5a6ac6a2ea { 'aliquot_tag': 'ALQ_28d65dba', 'gdc_sample_type': 'Primary Tumor' } C3L-02176.miRNA-Seq.T C3L-02176 CCRCC miRNA-Seq tumor CPT0100470006 181113_UNC31-K00269_0164_AH23NNBBXY_CTATAC_S15_L003_R1_001.unaln.bam 214036121 BAM unaligned CPTAC3 684b9f05-6909-4722-b949-311d3181b02b a47ce2109376b9d19ae2e0c6c215912c { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor' } C3L-02176.miRNA-Seq.T.hg38 C3L-02176 CCRCC miRNA-Seq tumor CPT0100470006 e872156b-b366-40ee-a67f-4b32e683c9bf_mirnaseq_gdc_realn.bam 239330077 BAM harmonized CPTAC3 c2bbee26-d13f-4f92-a5cb-7a69ee5a4794 1ae7bce648c1ed7910ac1eb3d47b4f3b { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02176.RNA-Seq.chimeric.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 32e1b4fc-a8d5-4ad0-ba29-83f3b779cac7.rna_seq.chimeric.gdc_realn.bam 32344419 BAM chimeric harmonized CPTAC3 445767f6-5254-43a9-8838-7a6648fdec8f 994266424cbc753904a687fb56d2dac4 { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02176.RNA-Seq.genomic.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 32e1b4fc-a8d5-4ad0-ba29-83f3b779cac7.rna_seq.genomic.gdc_realn.bam 8015981886 BAM genomic harmonized CPTAC3 12f480a0-8f7c-4164-b16b-582c8c998d37 8cd35498a482efcfed314a588c3d32ff { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02176.RNA-Seq.R1_L004.T C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTTTCG_S50_L004_R1_001.fastq.gz 3549869748 FASTQ R1_L004 unaligned CPTAC3 8712fe93-5cf8-4ec7-b40c-20bf98353c10 96fd353b46a1bf4aaec0fdca334bb183 { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02176.RNA-Seq.R2_L004.T C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTTTCG_S50_L004_R2_001.fastq.gz 3972882380 FASTQ R2_L004 unaligned CPTAC3 0bfd42d4-ffc2-4c4a-afbd-1563f26bccde bf10e05cf8bb9f62075f824528b7bf84 { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02176.RNA-Seq.transcriptome.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 32e1b4fc-a8d5-4ad0-ba29-83f3b779cac7.rna_seq.transcriptome.gdc_realn.bam 8215731263 BAM transcriptome harmonized CPTAC3 16dade5a-36ba-4560-a836-c64f961f4a90 419c9d3a0387af7eca25bcdbe7243743 { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor' } +C3L-02176.RNA-Seq.chimeric.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 b081245e-3e29-42d5-8499-a0107a01341f.rna_seq.chimeric.gdc_realn.bam 32339747 BAM chimeric harmonized CPTAC3 97f83ac9-5697-4ebe-91ba-4b53e804d0aa 9e8c307736c5961141e3f0da8f49de0d { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor' } +C3L-02176.RNA-Seq.genomic.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 b081245e-3e29-42d5-8499-a0107a01341f.rna_seq.genomic.gdc_realn.bam 8017020939 BAM genomic harmonized CPTAC3 f80c5f20-c1cc-461f-95d1-8ead846569e9 62e703b15408e2b139172d516037e51f { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor' } +C3L-02176.RNA-Seq.R1_L004.T C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTTTCG_S50_L004_R1_001.fastq.gz 3549869748 FASTQ R1_L004 unaligned CPTAC3 8712fe93-5cf8-4ec7-b40c-20bf98353c10 96fd353b46a1bf4aaec0fdca334bb183 { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02176.RNA-Seq.R2_L004.T C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTTTCG_S50_L004_R2_001.fastq.gz 3972882380 FASTQ R2_L004 unaligned CPTAC3 0bfd42d4-ffc2-4c4a-afbd-1563f26bccde bf10e05cf8bb9f62075f824528b7bf84 { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02176.RNA-Seq.transcriptome.T.hg38 C3L-02176 CCRCC RNA-Seq tumor CPT0100470006 b081245e-3e29-42d5-8499-a0107a01341f.rna_seq.transcriptome.gdc_realn.bam 9343692038 BAM transcriptome harmonized CPTAC3 abac7ec3-b3e8-443d-8e34-54e90e3dd8ec cd5b8f0317133f634948d23db4f3861a { 'aliquot_tag': 'ALQ_cf6e70bd', 'gdc_sample_type': 'Primary Tumor' } C3L-02176.WGS.N C3L-02176 CCRCC WGS blood_normal CPT0101950002 CPT0101950002.WholeGenome.RP-1303.bam 57885119134 BAM aligned CPTAC3 9641d242-e578-4f6f-9a30-c2c146ed7978 87e1cdd63c83ca6f9831321a8bcd5e19 { 'aliquot_tag': 'ALQ_a82affae', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02176.WGS.N.hg38 C3L-02176 CCRCC WGS blood_normal CPT0101950002 253aadb4-5232-451d-a462-01613fba4d1e_wgs_gdc_realn.bam 86587170323 BAM harmonized CPTAC3 70a3d096-9863-4512-9f0b-667497ec80bf 6d2ad9b8b321dba94023ddb9ee4b4252 { 'aliquot_tag': 'ALQ_a82affae', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02176.WGS.T C3L-02176 CCRCC WGS tumor CPT0100470008 CPT0100470008.WholeGenome.RP-1303.bam 57195549071 BAM aligned CPTAC3 8df40608-e700-469f-9590-e29f69910d69 fcb416c9d18370e5d0b90e11eddcf49a { 'aliquot_tag': 'ALQ_28d65dba', 'gdc_sample_type': 'Primary Tumor' } @@ -9591,11 +10302,11 @@ C3L-02177.MethArray.Green.T C3L-02177 CCRCC Methylation Array tumor CPT010053000 C3L-02177.MethArray.Red.T C3L-02177 CCRCC Methylation Array tumor CPT0100530009 202234370091_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 a647bcd1-b702-49f1-b777-dd5b2b6f1e6d 2f2b856b39ab5fb93cf4a107b04417b2 { 'aliquot_tag': 'ALQ_610d1849', 'gdc_sample_type': 'Primary Tumor' } C3L-02177.miRNA-Seq.T C3L-02177 CCRCC miRNA-Seq tumor CPT0100530006 181119_UNC31-K00269_0165_AH27WCBBXY_TTAGGC_S27_L003_R1_001.unaln.bam 205819376 BAM unaligned CPTAC3 ec3b97f8-cd3b-4c35-9758-e4ff4f835983 71dfc078966c96bb36cf6108e2dab20c { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor' } C3L-02177.miRNA-Seq.T.hg38 C3L-02177 CCRCC miRNA-Seq tumor CPT0100530006 fed580bd-5c46-4073-9529-cd8ead32c810_mirnaseq_gdc_realn.bam 234719866 BAM harmonized CPTAC3 186368ed-7e09-4bdb-b449-cf897c6baa1e f2fa6bb34de6bc070eb5c3c388da1b18 { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02177.RNA-Seq.chimeric.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 12acc771-8176-4709-bc1b-116010f4532d.rna_seq.chimeric.gdc_realn.bam 33828878 BAM chimeric harmonized CPTAC3 3869435e-8448-4cc8-8339-f201fc78d346 d79612024e33f1f651b272f1b27b71d6 { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02177.RNA-Seq.genomic.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 12acc771-8176-4709-bc1b-116010f4532d.rna_seq.genomic.gdc_realn.bam 8064545860 BAM genomic harmonized CPTAC3 7b28aaf3-8161-44e4-88b4-cd3330b0935d ca2547a0cf620a68400eb7a9354e6ec8 { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02177.RNA-Seq.R1_L008.T C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3685570714 FASTQ R1_L008 unaligned CPTAC3 5961026c-04cc-479b-b1e7-1dff75f36632 c085175f3a3cb46d6f10321d752c13d3 { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02177.RNA-Seq.R2_L008.T C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L008_R2_001.fastq.gz 4080658191 FASTQ R2_L008 unaligned CPTAC3 1c3e2265-25d0-4deb-91e8-d4928530236f 29a5a5a4fcd9e2f7b0e0dfb223fb33c8 { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02177.RNA-Seq.transcriptome.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 12acc771-8176-4709-bc1b-116010f4532d.rna_seq.transcriptome.gdc_realn.bam 8301242204 BAM transcriptome harmonized CPTAC3 ac749b4c-b9ba-4a29-bae9-9cbaaca8f350 43c802c657d8bd53ef28c2eacc07eec5 { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor' } +C3L-02177.RNA-Seq.chimeric.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 da520d66-6f9e-4732-a7fb-52bbb214bfaa.rna_seq.chimeric.gdc_realn.bam 33808724 BAM chimeric harmonized CPTAC3 9d78829a-429b-4775-9c33-46195c961a82 d3906fd5f78a429f6ffb9b8834f02796 { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor' } +C3L-02177.RNA-Seq.genomic.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 da520d66-6f9e-4732-a7fb-52bbb214bfaa.rna_seq.genomic.gdc_realn.bam 8065071777 BAM genomic harmonized CPTAC3 062746ad-2f79-4fa1-b5b0-178328997af2 613bbc04c20308f2b38ee5bff9737552 { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor' } +C3L-02177.RNA-Seq.R1_L008.T C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3685570714 FASTQ R1_L008 unaligned CPTAC3 5961026c-04cc-479b-b1e7-1dff75f36632 c085175f3a3cb46d6f10321d752c13d3 { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02177.RNA-Seq.R2_L008.T C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGTACG_S5_L008_R2_001.fastq.gz 4080658191 FASTQ R2_L008 unaligned CPTAC3 1c3e2265-25d0-4deb-91e8-d4928530236f 29a5a5a4fcd9e2f7b0e0dfb223fb33c8 { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-02177.RNA-Seq.transcriptome.T.hg38 C3L-02177 CCRCC RNA-Seq tumor CPT0100530006 da520d66-6f9e-4732-a7fb-52bbb214bfaa.rna_seq.transcriptome.gdc_realn.bam 9430415823 BAM transcriptome harmonized CPTAC3 9038519b-05df-477c-986b-a06883811925 97619d583c495c4b85222b07fdffc5da { 'aliquot_tag': 'ALQ_f1b205d8', 'gdc_sample_type': 'Primary Tumor' } C3L-02177.WGS.N C3L-02177 CCRCC WGS blood_normal CPT0101970002 CPT0101970002.WholeGenome.RP-1303.bam 61747006129 BAM aligned CPTAC3 1ff26dea-ec82-4481-85c7-98c2d485e42b 0809c09de129c05861b6b19b4fb920fb { 'aliquot_tag': 'ALQ_d2eaacce', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02177.WGS.N.hg38 C3L-02177 CCRCC WGS blood_normal CPT0101970002 d739a74a-bbf9-4d85-9e12-e0962e2281f1_wgs_gdc_realn.bam 90415050012 BAM harmonized CPTAC3 3ca01194-5dfe-4e29-94c2-c3f5c44c4610 2628bf8bc2d78ddb0838ea4fc47126c8 { 'aliquot_tag': 'ALQ_d2eaacce', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02177.WGS.T C3L-02177 CCRCC WGS tumor CPT0100530009 CPT0100530009.WholeGenome.RP-1303.bam 57470620882 BAM aligned CPTAC3 f001beca-976b-4369-8f3b-be7eec21d015 033f04bae4260bb4504df3a4d54ddd84 { 'aliquot_tag': 'ALQ_610d1849', 'gdc_sample_type': 'Primary Tumor' } @@ -9608,12 +10319,13 @@ C3L-02179.MethArray.Green.T C3L-02179 CCRCC Methylation Array tumor CPT038932000 C3L-02179.MethArray.Red.T C3L-02179 CCRCC Methylation Array tumor CPT0389320006 205555390157_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 cabeb903-d62a-4c71-bddb-34f45bcb2a52 53174b8812593391a5dd3439c91f4eef { 'aliquot_tag': 'ALQ_7200b995', 'gdc_sample_type': 'Primary Tumor' } C3L-02179.miRNA-Seq.T C3L-02179 CCRCC miRNA-Seq tumor CPT0389320009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GAGTGG_S12_L001_R1_001.unaln.bam 281561978 BAM unaligned CPTAC3 89414fb0-cdab-420d-ac73-a444d66e1a03 a7273f923d450ff4277e02cc2b5065ba { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor' } C3L-02179.miRNA-Seq.T.hg38 C3L-02179 CCRCC miRNA-Seq tumor CPT0389320009 8039278d-0564-4bd6-873c-4d1a14f0bc1f_mirnaseq_gdc_realn.bam 301360244 BAM harmonized CPTAC3 eb329e45-1460-4b24-88c1-7c9045b26e9b 9abb040b2ab297f3370de6a1d370b7da { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor' } -C3L-02179.RNA-Seq.chimeric.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 82299c72-4eda-45f4-9872-c5fad8b273dd.rna_seq.chimeric.gdc_realn.bam 310287986 BAM chimeric harmonized CPTAC3 9dc676e3-db93-4f17-b73c-e29f3a341d56 2e1c11328f19fa6fc336c6823bcdeb74 { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor' } -C3L-02179.RNA-Seq.genomic.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 82299c72-4eda-45f4-9872-c5fad8b273dd.rna_seq.genomic.gdc_realn.bam 9159304876 BAM genomic harmonized CPTAC3 bbf2806f-37c7-4c4e-8dea-ad2a9d529e68 8a4fbc52aec4e9b15728d4b4b107b0f0 { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor' } -C3L-02179.RNA-Seq.R1_L004.T C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 210105_UNC32-K00270_0269_BHKN5MBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 4325578436 FASTQ R1_L004 unaligned CPTAC3 291d9ec6-e718-475c-9115-aa9e7a13f309 07972d3b26f5d6aa8c85025051ad71d8 { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor' } -C3L-02179.RNA-Seq.R2_L004.T C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 210105_UNC32-K00270_0269_BHKN5MBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 4818831598 FASTQ R2_L004 unaligned CPTAC3 0798efc6-6a07-47da-9b5e-36bb40d30086 f5735a0009252d14e8a3a384787b5ccd { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor' } -C3L-02179.RNA-Seq.transcriptome.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 82299c72-4eda-45f4-9872-c5fad8b273dd.rna_seq.transcriptome.gdc_realn.bam 11553364776 BAM transcriptome harmonized CPTAC3 e1e57cd2-8b74-4eca-a20c-c4e4f9f215a5 d877170b307f2cdf45aec216cd411db8 { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor' } +C3L-02179.RNA-Seq.chimeric.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 adc24e6c-8a44-4cc0-86ae-9465e92fc24b.rna_seq.chimeric.gdc_realn.bam 310360652 BAM chimeric harmonized CPTAC3 9db60182-1f59-4dea-a415-36526d796640 a959cebd20d075074b10edb90f7466f7 { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor' } +C3L-02179.RNA-Seq.genomic.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 adc24e6c-8a44-4cc0-86ae-9465e92fc24b.rna_seq.genomic.gdc_realn.bam 9170864242 BAM genomic harmonized CPTAC3 a66714f3-9766-4055-b289-f18edcc668c7 4e856ae0bf0b3cdc88b5bef01865fd61 { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor' } +C3L-02179.RNA-Seq.R1_L004.T C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 210105_UNC32-K00270_0269_BHKN5MBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 4325578436 FASTQ R1_L004 unaligned CPTAC3 291d9ec6-e718-475c-9115-aa9e7a13f309 07972d3b26f5d6aa8c85025051ad71d8 { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02179.RNA-Seq.R2_L004.T C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 210105_UNC32-K00270_0269_BHKN5MBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 4818831598 FASTQ R2_L004 unaligned CPTAC3 0798efc6-6a07-47da-9b5e-36bb40d30086 f5735a0009252d14e8a3a384787b5ccd { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02179.RNA-Seq.transcriptome.T.hg38 C3L-02179 CCRCC RNA-Seq tumor CPT0389320009 adc24e6c-8a44-4cc0-86ae-9465e92fc24b.rna_seq.transcriptome.gdc_realn.bam 13191602594 BAM transcriptome harmonized CPTAC3 009d53c3-00d7-44cd-b87d-7be713c1f408 8cf0358abb796d482953cc4754ad9f92 { 'aliquot_tag': 'ALQ_e2bfa404', 'gdc_sample_type': 'Primary Tumor' } C3L-02179.WGS.N C3L-02179 CCRCC WGS blood_normal CPT0389350002 CPT0389350002.WholeGenome.RP-2158.bam 22779104205 BAM aligned CPTAC3 2ab17a16-391c-4218-b343-67d251a3e3a2 2be1443e6c30addfe2d6ccb6af9fac0c { 'aliquot_tag': 'ALQ_c74da19c', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-02179.WGS.N.hg38 C3L-02179 CCRCC WGS blood_normal CPT0389350002 aec2bb59-3129-4c35-ae5c-0cf7d469dc5d_wgs_gdc_realn.bam 68567939964 BAM harmonized CPTAC3 2b8dad30-f19f-453b-8608-b518ad4c42af f9e408753a0d4a8248fb6830e6b4b5ee { 'aliquot_tag': 'ALQ_c74da19c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02179.WGS.T C3L-02179 CCRCC WGS tumor CPT0389320006 CPT0389320006.WholeGenome.RP-2158.bam 28943946031 BAM aligned CPTAC3 d170c5e9-0ca9-46ad-8d9a-84dc73b1fa65 b9a0ebe562818f7c536e826f1879c5be { 'aliquot_tag': 'ALQ_7200b995', 'gdc_sample_type': 'Primary Tumor' } C3L-02179.WGS.T.hg38 C3L-02179 CCRCC WGS tumor CPT0389320006 b98cba65-1fbf-468e-bb65-d613601a14d8_wgs_gdc_realn.bam 84884110363 BAM harmonized CPTAC3 2fa8b12c-4bcb-4913-bac9-e24a99c0e7ff c62ae815291ff8a87de71e86fa796d4e { 'aliquot_tag': 'ALQ_7200b995', 'gdc_sample_type': 'Primary Tumor' } C3L-02179.WXS.N C3L-02179 CCRCC WXS blood_normal CPT0389350002 CPT0389350002.WholeExome.RP-1303.bam 22387851186 BAM aligned CPTAC3 e9f8d11d-499b-4edb-b5ae-6d2a9aa0a235 c1de8258b192529ec0ee00b65fe48ed2 { 'aliquot_tag': 'ALQ_c74da19c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9624,11 +10336,11 @@ C3L-02201.MethArray.Green.T C3L-02201 CCRCC Methylation Array tumor CPT012780000 C3L-02201.MethArray.Red.T C3L-02201 CCRCC Methylation Array tumor CPT0127800006 203219640158_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 01bdca6d-71c6-44e7-b25b-f4223d6edeca 3b2baf6f9d5254be3685f38453df24bd { 'aliquot_tag': 'ALQ_8d0e5525', 'gdc_sample_type': 'Primary Tumor' } C3L-02201.miRNA-Seq.T C3L-02201 CCRCC miRNA-Seq tumor CPT0127800009 190108_UNC31-K00269_0176_AHYGLVBBXX_CGATGT_S2_L004_R1_001.unaln.bam 253313343 BAM unaligned CPTAC3 faec1d79-ad67-417a-b108-2da0b04b46b0 23a8059b85c398a27546041c5a23420a { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor' } C3L-02201.miRNA-Seq.T.hg38 C3L-02201 CCRCC miRNA-Seq tumor CPT0127800009 b5319943-3ea9-43df-8625-f4b437c8b42b_mirnaseq_gdc_realn.bam 281376760 BAM harmonized CPTAC3 007daca6-312a-48b7-8752-a24a4035fb4b f361c5f46d0d7a7b57479aa6c920e9a8 { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02201.RNA-Seq.chimeric.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 6d5c930d-4416-47c6-8b64-cc3e0cef6b46.rna_seq.chimeric.gdc_realn.bam 192623208 BAM chimeric harmonized CPTAC3 e167eff6-a202-42b6-a904-4f3141ffabbf 0ea7c1266c2565d6219745d057f60be7 { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02201.RNA-Seq.genomic.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 6d5c930d-4416-47c6-8b64-cc3e0cef6b46.rna_seq.genomic.gdc_realn.bam 9526236119 BAM genomic harmonized CPTAC3 b69a24c7-417d-4eb5-a2ea-9aa1038dec7a a2ba70c5eac8d58c4cccc27a09fd076b { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02201.RNA-Seq.R1_L003.T C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L003_R1_001.fastq.gz 4443227448 FASTQ R1_L003 unaligned CPTAC3 2d6f17fe-6cc0-41b4-be1c-63c075b6fd28 7d179a7442aa109bb60ca29cfa02b0ce { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02201.RNA-Seq.R2_L003.T C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L003_R2_001.fastq.gz 4803673521 FASTQ R2_L003 unaligned CPTAC3 e0c70400-9aca-4795-8a1f-805f1956a943 7440500c12c5b6e495f6fcdb74c60bf9 { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02201.RNA-Seq.transcriptome.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 6d5c930d-4416-47c6-8b64-cc3e0cef6b46.rna_seq.transcriptome.gdc_realn.bam 10162342863 BAM transcriptome harmonized CPTAC3 b128939a-3551-4c01-894c-3f340f17702a ee4ad0b36b65c6b0bc962010002ae41f { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02201.RNA-Seq.chimeric.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 0f095cd9-9ba3-44e4-87dd-7f0c91d2e5ef.rna_seq.chimeric.gdc_realn.bam 192606932 BAM chimeric harmonized CPTAC3 9e1366a5-fd83-4c81-ad38-262c63bf87df 672e6eb0017bb78ffe12cdde1cf3c402 { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02201.RNA-Seq.genomic.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 0f095cd9-9ba3-44e4-87dd-7f0c91d2e5ef.rna_seq.genomic.gdc_realn.bam 9527776992 BAM genomic harmonized CPTAC3 dc28f02c-6cdf-4fa7-8f3f-1e9077ca3794 e543698d5d630b9fcd4fa33b8423b99b { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02201.RNA-Seq.R1_L003.T C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L003_R1_001.fastq.gz 4443227448 FASTQ R1_L003 unaligned CPTAC3 2d6f17fe-6cc0-41b4-be1c-63c075b6fd28 7d179a7442aa109bb60ca29cfa02b0ce { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02201.RNA-Seq.R2_L003.T C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L003_R2_001.fastq.gz 4803673521 FASTQ R2_L003 unaligned CPTAC3 e0c70400-9aca-4795-8a1f-805f1956a943 7440500c12c5b6e495f6fcdb74c60bf9 { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02201.RNA-Seq.transcriptome.T.hg38 C3L-02201 CCRCC RNA-Seq tumor CPT0127800009 0f095cd9-9ba3-44e4-87dd-7f0c91d2e5ef.rna_seq.transcriptome.gdc_realn.bam 11573340357 BAM transcriptome harmonized CPTAC3 23d9efd5-ea84-436f-ae00-0940c37ce3f2 1320a1be0142c76a8da4623546407862 { 'aliquot_tag': 'ALQ_1db148b4', 'gdc_sample_type': 'Primary Tumor' } C3L-02201.WGS.N C3L-02201 CCRCC WGS blood_normal CPT0126610002 CPT0126610002.WholeGenome.RP-1303.bam 56953536310 BAM aligned CPTAC3 ff717f62-5e61-476b-88c8-6c939879dfa9 439f63d63338d63b11f62b12e364ec1f { 'aliquot_tag': 'ALQ_2b7ed248', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02201.WGS.N.hg38 C3L-02201 CCRCC WGS blood_normal CPT0126610002 6da8e509-63ab-4fbb-b44c-3ec96c0ef66b_wgs_gdc_realn.bam 82260301691 BAM harmonized CPTAC3 6d3096e0-f7a4-4ed7-aa13-60a0cbc537c2 f6a8230d2357f683b4f49dda721210a9 { 'aliquot_tag': 'ALQ_2b7ed248', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02201.WGS.T C3L-02201 CCRCC WGS tumor CPT0127800006 CPT0127800006.WholeGenome.RP-1303.bam 59264812104 BAM aligned CPTAC3 3ab146ac-51ba-4984-9b23-a44a634c4694 e920bdc0c8f09a2c4a2c03547adc794e { 'aliquot_tag': 'ALQ_8d0e5525', 'gdc_sample_type': 'Primary Tumor' } @@ -9641,11 +10353,11 @@ C3L-02202.MethArray.Green.T C3L-02202 CCRCC Methylation Array tumor CPT020335000 C3L-02202.MethArray.Red.T C3L-02202 CCRCC Methylation Array tumor CPT0203350005 203219650100_R04C01_Red.idat 13676221 IDAT Red NA CPTAC3 adde3343-0e83-437b-9996-c948f93f19e2 e605514bad6293f9e8f21446d279d46e { 'aliquot_tag': 'ALQ_39c76487', 'gdc_sample_type': 'Primary Tumor' } C3L-02202.miRNA-Seq.T C3L-02202 CCRCC miRNA-Seq tumor CPT0203350008 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGAAA_S20_L008_R1_001.unaln.bam 289794974 BAM unaligned CPTAC3 fe9c62e1-945e-4891-ab2a-1c5200401a5d 80d0d24afc94abfa2471d4e42ed906e8 { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor' } C3L-02202.miRNA-Seq.T.hg38 C3L-02202 CCRCC miRNA-Seq tumor CPT0203350008 7acd45d4-8622-4760-8485-8f64b70b208c_mirnaseq_gdc_realn.bam 317389769 BAM harmonized CPTAC3 9f38c715-0f67-4270-8a73-6d2ba9085614 955b9d62d17947c20536d61fe809b773 { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02202.RNA-Seq.chimeric.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 d8605150-d663-469f-90ba-3e3f1bb7094e.rna_seq.chimeric.gdc_realn.bam 268497293 BAM chimeric harmonized CPTAC3 7a37bbfe-d904-41ef-9c50-14a6faafdce5 9f20e66551c4ad049564827b08ea95d9 { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02202.RNA-Seq.genomic.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 d8605150-d663-469f-90ba-3e3f1bb7094e.rna_seq.genomic.gdc_realn.bam 6857106343 BAM genomic harmonized CPTAC3 36272452-5512-4b80-8c3c-e61da184d4b0 2f0afb399d6340b5758b36d8bc9f85a3 { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02202.RNA-Seq.R1_L002.T C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGGCC_S7_L002_R1_001.fastq.gz 3029062493 FASTQ R1_L002 unaligned CPTAC3 0bc2b024-6b9a-4d91-9774-e4078cce9516 a959e65064a0f7856cafe35393dc9202 { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02202.RNA-Seq.R2_L002.T C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGGCC_S7_L002_R2_001.fastq.gz 3258073023 FASTQ R2_L002 unaligned CPTAC3 31ca8c25-f05d-4f44-a33e-5fec114f829c b4b998a41ad433bc4966b5eca135ba06 { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02202.RNA-Seq.transcriptome.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 d8605150-d663-469f-90ba-3e3f1bb7094e.rna_seq.transcriptome.gdc_realn.bam 7133589841 BAM transcriptome harmonized CPTAC3 6441c0cc-7748-4ac2-94a0-01794938e23d c0630c579b3b54bc3d785b51f5ee48bc { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02202.RNA-Seq.chimeric.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 814ac784-8b32-49bf-a89b-ac365d3401f4.rna_seq.chimeric.gdc_realn.bam 268473856 BAM chimeric harmonized CPTAC3 ab5e61a5-54e1-456e-bf85-24e848f3b144 0a11e2507629942b9c31afb1f38b9080 { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02202.RNA-Seq.genomic.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 814ac784-8b32-49bf-a89b-ac365d3401f4.rna_seq.genomic.gdc_realn.bam 6858783039 BAM genomic harmonized CPTAC3 23691684-c6c1-4265-a9d8-c3c98555bf44 1b0fb4b0cd896fc6a2f86044b8fe0d5f { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02202.RNA-Seq.R1_L002.T C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGGCC_S7_L002_R1_001.fastq.gz 3029062493 FASTQ R1_L002 unaligned CPTAC3 0bc2b024-6b9a-4d91-9774-e4078cce9516 a959e65064a0f7856cafe35393dc9202 { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02202.RNA-Seq.R2_L002.T C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGGCC_S7_L002_R2_001.fastq.gz 3258073023 FASTQ R2_L002 unaligned CPTAC3 31ca8c25-f05d-4f44-a33e-5fec114f829c b4b998a41ad433bc4966b5eca135ba06 { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-02202.RNA-Seq.transcriptome.T.hg38 C3L-02202 CCRCC RNA-Seq tumor CPT0203350008 814ac784-8b32-49bf-a89b-ac365d3401f4.rna_seq.transcriptome.gdc_realn.bam 8139950475 BAM transcriptome harmonized CPTAC3 7eeb5ad0-a30b-42e8-b0ea-8a9ec9ad28a2 dd47ff0c33220f0d7540f03ac2382083 { 'aliquot_tag': 'ALQ_4776183a', 'gdc_sample_type': 'Primary Tumor' } C3L-02202.WGS.N C3L-02202 CCRCC WGS blood_normal CPT0204040002 CPT0204040002.WholeGenome.RP-1303.bam 57723313154 BAM aligned CPTAC3 517538fb-689f-4927-83a8-ac13f29e16c6 ee8a5ae7f15ab1e10d0e93a2e1e3bfce { 'aliquot_tag': 'ALQ_d9f094b4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02202.WGS.N.hg38 C3L-02202 CCRCC WGS blood_normal CPT0204040002 5ad2dbd0-a413-4315-afa2-79dabea873d5_wgs_gdc_realn.bam 84026758125 BAM harmonized CPTAC3 983b75f2-1780-48f3-8bfe-f0d5ef100ac1 707fe7286e44488b9ed930d30b16910d { 'aliquot_tag': 'ALQ_d9f094b4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02202.WGS.T C3L-02202 CCRCC WGS tumor CPT0203350005 CPT0203350005.WholeGenome.RP-1303.bam 65667720093 BAM aligned CPTAC3 ba430f00-a13b-48f5-9f48-f31d2fca0699 b057e9648e19a58275e5a5a3f2bba2f4 { 'aliquot_tag': 'ALQ_39c76487', 'gdc_sample_type': 'Primary Tumor' } @@ -9658,16 +10370,16 @@ C3L-02204.miRNA-Seq.A C3L-02204 CCRCC miRNA-Seq tissue_normal CPT0389380005 2101 C3L-02204.miRNA-Seq.A.hg38 C3L-02204 CCRCC miRNA-Seq tissue_normal CPT0389380005 2add5dae-4071-4259-8980-d700ebdfebdb_mirnaseq_gdc_realn.bam 411492806 BAM harmonized CPTAC3 0b327fad-0d37-4c61-aa81-cfa3359ececf a63964dfd779b62a1f2d0ee391b6c329 { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02204.miRNA-Seq.T C3L-02204 CCRCC miRNA-Seq tumor CPT0389370009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GGTAGC_S14_L001_R1_001.unaln.bam 208289890 BAM unaligned CPTAC3 9bc1ede8-91c8-4def-8af7-c468e5207498 c226d9a642914c503adfe6ae83d5f915 { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor' } C3L-02204.miRNA-Seq.T.hg38 C3L-02204 CCRCC miRNA-Seq tumor CPT0389370009 4998d68d-32cd-4463-9559-8169098a565e_mirnaseq_gdc_realn.bam 218224636 BAM harmonized CPTAC3 488d2dca-2860-4509-9fa8-2f5e9b13eb8e b5d5926024b691d60a95a030a4b45041 { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor' } -C3L-02204.RNA-Seq.chimeric.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 49ee7306-2152-4f6e-b641-ad34ac45481b.rna_seq.chimeric.gdc_realn.bam 202891678 BAM chimeric harmonized CPTAC3 7c62dec3-a9f4-4793-a540-312789f447cc 01d46281f8af77e1a41fd3a802a9d3fa { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02204.RNA-Seq.chimeric.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 82dc232a-d7bd-472f-99c4-b9d6367b7d14.rna_seq.chimeric.gdc_realn.bam 155577360 BAM chimeric harmonized CPTAC3 5ff89419-bb86-420f-9591-8039e1e0b88a 1306046897f5732ebdb557c5545c5bf1 { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor' } -C3L-02204.RNA-Seq.genomic.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 49ee7306-2152-4f6e-b641-ad34ac45481b.rna_seq.genomic.gdc_realn.bam 7533025295 BAM genomic harmonized CPTAC3 63b59669-eaf9-46a3-9e64-04a9dee5c4fb 95d4a28e65ef2ca2ee3b735ce31ae8fa { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02204.RNA-Seq.genomic.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 82dc232a-d7bd-472f-99c4-b9d6367b7d14.rna_seq.genomic.gdc_realn.bam 8226385015 BAM genomic harmonized CPTAC3 70d57b59-94a1-4a97-9d04-7207b4721633 a17d78c83ab0916aa8c5faaa2e403d8d { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor' } -C3L-02204.RNA-Seq.R1_L004.T C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGAGGCC-GTTAATTG_S14_L004_R1_001.fastq.gz 3921044191 FASTQ R1_L004 unaligned CPTAC3 458b1ced-ecc6-4d7a-a162-e5985bd3a4f3 9983ee4b54438c7d188765e952ae6775 { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor' } -C3L-02204.RNA-Seq.R1_L008.A C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 210105_UNC32-K00270_0268_AHK7HMBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3417366481 FASTQ R1_L008 unaligned CPTAC3 1215dd59-35d8-4df7-8d6f-81c77ad6c1c2 787a9f393752174c5b3b22bfc396fa0a { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02204.RNA-Seq.R2_L004.T C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGAGGCC-GTTAATTG_S14_L004_R2_001.fastq.gz 4426630672 FASTQ R2_L004 unaligned CPTAC3 e12fd904-3826-45f6-9a89-3cd147f310de d5abd2f512aec4aa0568d32d8d86784f { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor' } -C3L-02204.RNA-Seq.R2_L008.A C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 210105_UNC32-K00270_0268_AHK7HMBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3983724232 FASTQ R2_L008 unaligned CPTAC3 f858fdc6-a4fa-49f6-ad94-9484d7bf2d80 258b89ea1bcfb027affef460c6dc53d7 { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02204.RNA-Seq.transcriptome.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 49ee7306-2152-4f6e-b641-ad34ac45481b.rna_seq.transcriptome.gdc_realn.bam 8013191212 BAM transcriptome harmonized CPTAC3 2a64763a-bdb6-423d-b28b-394e686d6d95 302024810c4838b7872237fa6415d1dd { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02204.RNA-Seq.transcriptome.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 82dc232a-d7bd-472f-99c4-b9d6367b7d14.rna_seq.transcriptome.gdc_realn.bam 9847483702 BAM transcriptome harmonized CPTAC3 0a35ba14-9038-43de-9fb2-9ca2ca458470 6a55cb98a4908291beb2cc6bfd4ef6c1 { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor' } +C3L-02204.RNA-Seq.chimeric.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 772f691d-23f8-4caf-9197-03f63ccdb3c8.rna_seq.chimeric.gdc_realn.bam 202900843 BAM chimeric harmonized CPTAC3 8dfa11cd-7a30-41a2-bf9d-6db5f5f06a42 de95b58f6553899fd36642a01c24face { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02204.RNA-Seq.chimeric.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 d9939563-9bbe-4fd6-ad56-3cb0dbf6dda0.rna_seq.chimeric.gdc_realn.bam 155571470 BAM chimeric harmonized CPTAC3 5dc17ef4-78ef-4de3-a240-fff5b9dbdda2 5b772d0fb620b785e6cdcf256c0fd05d { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor' } +C3L-02204.RNA-Seq.genomic.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 772f691d-23f8-4caf-9197-03f63ccdb3c8.rna_seq.genomic.gdc_realn.bam 7539358618 BAM genomic harmonized CPTAC3 09a9d005-3ea4-471a-ba24-4fd9801e8643 a18b8b8611d8e72cf26101ff7b06610a { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02204.RNA-Seq.genomic.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 d9939563-9bbe-4fd6-ad56-3cb0dbf6dda0.rna_seq.genomic.gdc_realn.bam 8236782005 BAM genomic harmonized CPTAC3 75d00f8d-0d14-424c-bdc3-b77c93b5cb00 741d778d68f8953acc3e8b00ca31c0af { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor' } +C3L-02204.RNA-Seq.R1_L004.T C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGAGGCC-GTTAATTG_S14_L004_R1_001.fastq.gz 3921044191 FASTQ R1_L004 unaligned CPTAC3 458b1ced-ecc6-4d7a-a162-e5985bd3a4f3 9983ee4b54438c7d188765e952ae6775 { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02204.RNA-Seq.R1_L008.A C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 210105_UNC32-K00270_0268_AHK7HMBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3417366481 FASTQ R1_L008 unaligned CPTAC3 1215dd59-35d8-4df7-8d6f-81c77ad6c1c2 787a9f393752174c5b3b22bfc396fa0a { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02204.RNA-Seq.R2_L004.T C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGAGGCC-GTTAATTG_S14_L004_R2_001.fastq.gz 4426630672 FASTQ R2_L004 unaligned CPTAC3 e12fd904-3826-45f6-9a89-3cd147f310de d5abd2f512aec4aa0568d32d8d86784f { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02204.RNA-Seq.R2_L008.A C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 210105_UNC32-K00270_0268_AHK7HMBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3983724232 FASTQ R2_L008 unaligned CPTAC3 f858fdc6-a4fa-49f6-ad94-9484d7bf2d80 258b89ea1bcfb027affef460c6dc53d7 { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02204.RNA-Seq.transcriptome.A.hg38 C3L-02204 CCRCC RNA-Seq tissue_normal CPT0389380005 772f691d-23f8-4caf-9197-03f63ccdb3c8.rna_seq.transcriptome.gdc_realn.bam 9065357859 BAM transcriptome harmonized CPTAC3 03bcb054-65bf-48d2-a057-94c5486f65e7 983f82cc031bbfc8edf6a302a03dee9c { 'aliquot_tag': 'ALQ_a1b9f08e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02204.RNA-Seq.transcriptome.T.hg38 C3L-02204 CCRCC RNA-Seq tumor CPT0389370009 d9939563-9bbe-4fd6-ad56-3cb0dbf6dda0.rna_seq.transcriptome.gdc_realn.bam 11309255325 BAM transcriptome harmonized CPTAC3 ba7e3e96-818b-4342-a15a-ee1d07c740dd c68bd7963425c864152a153518ca0460 { 'aliquot_tag': 'ALQ_2a5f2b74', 'gdc_sample_type': 'Primary Tumor' } C3L-02204.WGS.N C3L-02204 CCRCC WGS blood_normal CPT0389430002 CPT0389430002.WholeGenome.RP-2158.bam 28208508198 BAM aligned CPTAC3 da31d0eb-28b3-422e-880c-71ce48e563d4 c9be2f205ce2726ae53fcd7cdc027880 { 'aliquot_tag': 'ALQ_55086484', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02204.WGS.N.hg38 C3L-02204 CCRCC WGS blood_normal CPT0389430002 e5c861cd-f3bf-47bf-9a9f-6513ae52f5b2_wgs_gdc_realn.bam 86396963412 BAM harmonized CPTAC3 d1948431-f679-41a0-8720-1a200b755448 62af9f21dcd1e0e88edb07c6840fb419 { 'aliquot_tag': 'ALQ_55086484', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02204.WGS.T C3L-02204 CCRCC WGS tumor CPT0389370006 CPT0389370006.WholeGenome.RP-2158.bam 24528002030 BAM aligned CPTAC3 7753385e-7c08-420e-b379-ee8fcfda5601 d5300056c34b558d0bbebaa6eb4e80cc { 'aliquot_tag': 'ALQ_bae036e5', 'gdc_sample_type': 'Primary Tumor' } @@ -9682,16 +10394,16 @@ C3L-02208.miRNA-Seq.A C3L-02208 CCRCC miRNA-Seq tissue_normal CPT0171900006 1901 C3L-02208.miRNA-Seq.A.hg38 C3L-02208 CCRCC miRNA-Seq tissue_normal CPT0171900006 45f3f999-f4ba-4128-b51c-78d94505154e_mirnaseq_gdc_realn.bam 300880929 BAM harmonized CPTAC3 5387f5ad-fba7-43bd-addc-bcec05b207f3 1d6afa96d3919adc92c2af93f585939e { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02208.miRNA-Seq.T C3L-02208 CCRCC miRNA-Seq tumor CPT0171890009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTTTCG_S21_L004_R1_001.unaln.bam 180375201 BAM unaligned CPTAC3 4b92de22-eb02-4a71-8828-2fbed8aa5deb fd7f0d169d890cb9f651c35ebc9bdcba { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor' } C3L-02208.miRNA-Seq.T.hg38 C3L-02208 CCRCC miRNA-Seq tumor CPT0171890009 06b7ce05-9228-4221-93cf-db3a8663f1a5_mirnaseq_gdc_realn.bam 199233805 BAM harmonized CPTAC3 6c88f57e-1470-46fb-97a7-42b28cdf6400 2c6652c6511d589395c81b0ca54958a9 { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02208.RNA-Seq.chimeric.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 de03ed14-c984-4f98-9ccd-5f404e83f04c.rna_seq.chimeric.gdc_realn.bam 82086441 BAM chimeric harmonized CPTAC3 fb48a4cc-6c8f-4e73-9846-5551210a33c1 5b52b6be95f9d22a7b85c48668162971 { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02208.RNA-Seq.chimeric.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 373955e3-0d6a-4823-be5c-d57cd38b1c0e.rna_seq.chimeric.gdc_realn.bam 33748278 BAM chimeric harmonized CPTAC3 0f03af3f-4276-4bea-88f4-db6184fb1b68 b423dae62eb1a7131078396c7f14935f { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02208.RNA-Seq.genomic.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 de03ed14-c984-4f98-9ccd-5f404e83f04c.rna_seq.genomic.gdc_realn.bam 8455551767 BAM genomic harmonized CPTAC3 455af794-eabc-49e8-aad2-37eb1a4c933d 3568ca3e0980afd8438794569be44ea9 { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02208.RNA-Seq.genomic.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 373955e3-0d6a-4823-be5c-d57cd38b1c0e.rna_seq.genomic.gdc_realn.bam 6768628611 BAM genomic harmonized CPTAC3 02a0e4e7-1dc5-4218-8609-b90a60e4d7f5 e8c86476e967446e25b27cb8dd46cd8f { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02208.RNA-Seq.R1_L004.T C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGTACG_S15_L004_R1_001.fastq.gz 3287953515 FASTQ R1_L004 unaligned CPTAC3 1ef9c3e1-60c0-49d5-9b39-8081f0001d9c 89ea33185cf8af625dabb374590e5f5d { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02208.RNA-Seq.R1_L006.A C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 190117_UNC31-K00269_0180_AH35VKBBXY_ATGTCA_S13_L006_R1_001.fastq.gz 3782533384 FASTQ R1_L006 unaligned CPTAC3 bcb43e2d-a2fb-4d53-8e68-1425c00672d5 c7dd1d946af2852a84ce0111be395e28 { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02208.RNA-Seq.R2_L004.T C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGTACG_S15_L004_R2_001.fastq.gz 3532810862 FASTQ R2_L004 unaligned CPTAC3 877f5fd6-73d4-4659-821f-c854e2956b23 bdfeb7e4caaf753db33a37c2b72a2ca5 { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02208.RNA-Seq.R2_L006.A C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 190117_UNC31-K00269_0180_AH35VKBBXY_ATGTCA_S13_L006_R2_001.fastq.gz 4068249957 FASTQ R2_L006 unaligned CPTAC3 fd5987b2-29a2-4bdd-b79c-2f23ea618e0b a5da1f5eec41b440c9d84f0065362ecf { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02208.RNA-Seq.transcriptome.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 de03ed14-c984-4f98-9ccd-5f404e83f04c.rna_seq.transcriptome.gdc_realn.bam 8686939506 BAM transcriptome harmonized CPTAC3 d3c77bdf-9c5b-4cbb-bd71-6cd4e4276895 17fbc8ddb70ec02ed752464d23bef3b8 { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02208.RNA-Seq.transcriptome.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 373955e3-0d6a-4823-be5c-d57cd38b1c0e.rna_seq.transcriptome.gdc_realn.bam 8314902048 BAM transcriptome harmonized CPTAC3 be729937-5236-4550-8b34-389cf4670d50 2e25c58447f4e23b64f281e7a445083c { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02208.RNA-Seq.chimeric.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 cdc2bb66-8eb5-4281-8001-72c0fa2afa84.rna_seq.chimeric.gdc_realn.bam 82060706 BAM chimeric harmonized CPTAC3 a84dbec5-9434-4932-8b4a-b08d91657fa1 a059d9f9c4eaedd9026a55af047ca998 { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02208.RNA-Seq.chimeric.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 1f725523-f797-4531-9ac2-69a42b5dc243.rna_seq.chimeric.gdc_realn.bam 33735601 BAM chimeric harmonized CPTAC3 d1a9660f-1bae-4595-9fb9-0aef9148235c 1429a4b08e539c2ec5cfbd7664754bf0 { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02208.RNA-Seq.genomic.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 cdc2bb66-8eb5-4281-8001-72c0fa2afa84.rna_seq.genomic.gdc_realn.bam 8456553027 BAM genomic harmonized CPTAC3 e009a4de-45d9-4c7d-82b3-41c10b50c92b b4991ccd030fc9a7d9e9eddc8158d51f { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02208.RNA-Seq.genomic.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 1f725523-f797-4531-9ac2-69a42b5dc243.rna_seq.genomic.gdc_realn.bam 6769791965 BAM genomic harmonized CPTAC3 04e43b9a-45f3-4d01-b134-ef6293878a83 16640a16992efd628eda50d2e4876a6a { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02208.RNA-Seq.R1_L004.T C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGTACG_S15_L004_R1_001.fastq.gz 3287953515 FASTQ R1_L004 unaligned CPTAC3 1ef9c3e1-60c0-49d5-9b39-8081f0001d9c 89ea33185cf8af625dabb374590e5f5d { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02208.RNA-Seq.R1_L006.A C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 190117_UNC31-K00269_0180_AH35VKBBXY_ATGTCA_S13_L006_R1_001.fastq.gz 3782533384 FASTQ R1_L006 unaligned CPTAC3 bcb43e2d-a2fb-4d53-8e68-1425c00672d5 c7dd1d946af2852a84ce0111be395e28 { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-02208.RNA-Seq.R2_L004.T C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGTACG_S15_L004_R2_001.fastq.gz 3532810862 FASTQ R2_L004 unaligned CPTAC3 877f5fd6-73d4-4659-821f-c854e2956b23 bdfeb7e4caaf753db33a37c2b72a2ca5 { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02208.RNA-Seq.R2_L006.A C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 190117_UNC31-K00269_0180_AH35VKBBXY_ATGTCA_S13_L006_R2_001.fastq.gz 4068249957 FASTQ R2_L006 unaligned CPTAC3 fd5987b2-29a2-4bdd-b79c-2f23ea618e0b a5da1f5eec41b440c9d84f0065362ecf { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-02208.RNA-Seq.transcriptome.A.hg38 C3L-02208 CCRCC RNA-Seq tissue_normal CPT0171900006 cdc2bb66-8eb5-4281-8001-72c0fa2afa84.rna_seq.transcriptome.gdc_realn.bam 9939028411 BAM transcriptome harmonized CPTAC3 64ac38d1-3df2-4cf0-a146-373abc8dbf67 b481cc6230f548b5cc19dbbf6e27dba5 { 'aliquot_tag': 'ALQ_6d62bdde', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02208.RNA-Seq.transcriptome.T.hg38 C3L-02208 CCRCC RNA-Seq tumor CPT0171890009 1f725523-f797-4531-9ac2-69a42b5dc243.rna_seq.transcriptome.gdc_realn.bam 9514349643 BAM transcriptome harmonized CPTAC3 23b5ff1d-cf8f-4153-9e76-585f91448358 83c2b571fe77978e8eea3505b971d59c { 'aliquot_tag': 'ALQ_3b91119b', 'gdc_sample_type': 'Primary Tumor' } C3L-02208.WGS.N C3L-02208 CCRCC WGS blood_normal CPT0167350002 CPT0167350002.WholeGenome.RP-1303.bam 55839634059 BAM aligned CPTAC3 ad73a462-2eea-48ad-81f8-b4a55a730077 970cb02efbc02f4f40e171fa90c0b6b0 { 'aliquot_tag': 'ALQ_ac0ee075', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02208.WGS.N.hg38 C3L-02208 CCRCC WGS blood_normal CPT0167350002 22c82d21-f2f4-460b-9769-87e602ad349e_wgs_gdc_realn.bam 80586728189 BAM harmonized CPTAC3 1a0dfa3e-7be7-4ba1-9610-7e710696d753 00ad2ccdefc3d03f55d05eaa3736c0ad { 'aliquot_tag': 'ALQ_ac0ee075', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02208.WGS.T C3L-02208 CCRCC WGS tumor CPT0171890011 CPT0171890011.WholeGenome.RP-1303.bam 56115625158 BAM aligned CPTAC3 6cbbb001-cf5c-4d36-b3f7-3d960e5bb14e 3cec41ef2f741a6232777b8c7934f99a { 'aliquot_tag': 'ALQ_2c51a8e8', 'gdc_sample_type': 'Primary Tumor' } @@ -9704,11 +10416,11 @@ C3L-02210.MethArray.Green.T C3L-02210 CCRCC Methylation Array tumor CPT038957000 C3L-02210.MethArray.Red.T C3L-02210 CCRCC Methylation Array tumor CPT0389570006 205589730156_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 d1ce67b9-5465-4c44-9db8-492e79987d5d e615d0486908d97082ca39ac3b5ca278 { 'aliquot_tag': 'ALQ_6cb9d5f8', 'gdc_sample_type': 'Primary Tumor' } C3L-02210.miRNA-Seq.T C3L-02210 CCRCC miRNA-Seq tumor CPT0389570009 210111_UNC32-K00270_0270_AHJ5LKBBXY_ATTCCT_S6_L001_R1_001.unaln.bam 311277713 BAM unaligned CPTAC3 e35d5160-3871-44c0-aaeb-7b77f52990a1 f74e7097ab1f206c173a9e5ddc25efb4 { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor' } C3L-02210.miRNA-Seq.T.hg38 C3L-02210 CCRCC miRNA-Seq tumor CPT0389570009 afa17d90-78b8-4359-a3a7-8e3f9d90f3a7_mirnaseq_gdc_realn.bam 338364995 BAM harmonized CPTAC3 1cbcdd4f-5c05-439b-a98a-1dbade6cd054 8f3151c875a391b497dcc38877b13c7f { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor' } -C3L-02210.RNA-Seq.chimeric.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 1f9ac0a6-059a-42ae-96f7-707c0f05e928.rna_seq.chimeric.gdc_realn.bam 423185402 BAM chimeric harmonized CPTAC3 86eda5ad-f0f7-4783-9d54-c3eb2a19d85f 9e7747c46b1bb3ff7175da494b6d170b { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor' } -C3L-02210.RNA-Seq.genomic.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 1f9ac0a6-059a-42ae-96f7-707c0f05e928.rna_seq.genomic.gdc_realn.bam 10077910484 BAM genomic harmonized CPTAC3 4f9e0494-15d9-4a9d-bad4-4deec110d54c 721f5d182300e9d7062dd5514a452136 { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor' } -C3L-02210.RNA-Seq.R1_L003.T C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 210105_UNC32-K00270_0269_BHKN5MBBXY_CTTGGTAT-CCAAGTCC_S10_L003_R1_001.fastq.gz 4757703509 FASTQ R1_L003 unaligned CPTAC3 3f0311f3-2133-4706-8ae5-8503af6b41b7 9feab2c8573075730f54258a787e8b43 { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor' } -C3L-02210.RNA-Seq.R2_L003.T C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 210105_UNC32-K00270_0269_BHKN5MBBXY_CTTGGTAT-CCAAGTCC_S10_L003_R2_001.fastq.gz 5307998100 FASTQ R2_L003 unaligned CPTAC3 be904ae4-da51-4c77-9fdf-72edf282f8b2 bac95b820aa950a679b077e82a8f3a99 { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor' } -C3L-02210.RNA-Seq.transcriptome.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 1f9ac0a6-059a-42ae-96f7-707c0f05e928.rna_seq.transcriptome.gdc_realn.bam 10387341101 BAM transcriptome harmonized CPTAC3 d25a58e5-09ab-4d40-84b8-42e888472b85 a7d75b65f61f19dd17a1b67cdfb38f41 { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor' } +C3L-02210.RNA-Seq.chimeric.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 567e2dbb-7249-4058-8424-f0c8a5657809.rna_seq.chimeric.gdc_realn.bam 423227566 BAM chimeric harmonized CPTAC3 cc6643e5-4a31-4fcb-993f-4bceee8d6df6 a98a352784af9c582c562e654436da28 { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor' } +C3L-02210.RNA-Seq.genomic.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 567e2dbb-7249-4058-8424-f0c8a5657809.rna_seq.genomic.gdc_realn.bam 10086427400 BAM genomic harmonized CPTAC3 38aed37c-be55-446a-9f2c-59a249b50a95 be00c3d7f5e341bebcb8f8548da6a8a6 { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor' } +C3L-02210.RNA-Seq.R1_L003.T C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 210105_UNC32-K00270_0269_BHKN5MBBXY_CTTGGTAT-CCAAGTCC_S10_L003_R1_001.fastq.gz 4757703509 FASTQ R1_L003 unaligned CPTAC3 3f0311f3-2133-4706-8ae5-8503af6b41b7 9feab2c8573075730f54258a787e8b43 { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02210.RNA-Seq.R2_L003.T C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 210105_UNC32-K00270_0269_BHKN5MBBXY_CTTGGTAT-CCAAGTCC_S10_L003_R2_001.fastq.gz 5307998100 FASTQ R2_L003 unaligned CPTAC3 be904ae4-da51-4c77-9fdf-72edf282f8b2 bac95b820aa950a679b077e82a8f3a99 { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02210.RNA-Seq.transcriptome.T.hg38 C3L-02210 CCRCC RNA-Seq tumor CPT0389570009 567e2dbb-7249-4058-8424-f0c8a5657809.rna_seq.transcriptome.gdc_realn.bam 11955512900 BAM transcriptome harmonized CPTAC3 6425f959-86e8-4fd1-a973-6b58198a1004 f9f1d9f1c11f39368647b01c8e5443b8 { 'aliquot_tag': 'ALQ_fc06c869', 'gdc_sample_type': 'Primary Tumor' } C3L-02210.WGS.N C3L-02210 CCRCC WGS blood_normal CPT0389630002 CPT0389630002.WholeGenome.RP-2158.bam 27219308781 BAM aligned CPTAC3 6e90d2bd-0871-41a2-a0b6-0d784299720a c51c7eabb7c9173adf7568919dfc883c { 'aliquot_tag': 'ALQ_18c0c58f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02210.WGS.N.hg38 C3L-02210 CCRCC WGS blood_normal CPT0389630002 f32999ce-095a-4dfa-9451-d775f9ca0632_wgs_gdc_realn.bam 80843815084 BAM harmonized CPTAC3 0c683470-3bd2-4eb5-b1dc-625e95838809 4ac737fbd278bf9f0ec05498746764b4 { 'aliquot_tag': 'ALQ_18c0c58f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02210.WGS.T C3L-02210 CCRCC WGS tumor CPT0389570006 CPT0389570006.WholeGenome.RP-2158.bam 29998002896 BAM aligned CPTAC3 2c98cbba-55a7-4aec-bc8c-645a71c79e4d 49187dfc7cb18a71ac4dfaa6aa7fa8ac { 'aliquot_tag': 'ALQ_6cb9d5f8', 'gdc_sample_type': 'Primary Tumor' } @@ -9723,16 +10435,16 @@ C3L-02211.miRNA-Seq.A C3L-02211 CCRCC miRNA-Seq tissue_normal CPT0127870006 1901 C3L-02211.miRNA-Seq.A.hg38 C3L-02211 CCRCC miRNA-Seq tissue_normal CPT0127870006 e08ac1ca-ef98-406c-8485-b84029c08c92_mirnaseq_gdc_realn.bam 333568848 BAM harmonized CPTAC3 473c8474-476d-4aa7-99e0-db642808d21f c21554e39c3331ea84bbee6e39aa5da0 { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02211.miRNA-Seq.T C3L-02211 CCRCC miRNA-Seq tumor CPT0127860008 190108_UNC31-K00269_0176_AHYGLVBBXX_TGACCA_S4_L004_R1_001.unaln.bam 250064796 BAM unaligned CPTAC3 39a27af1-45dc-477d-aaf5-fb83b273c677 75240265910594566eb0062c020f22fd { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor' } C3L-02211.miRNA-Seq.T.hg38 C3L-02211 CCRCC miRNA-Seq tumor CPT0127860008 dce7f65e-63a1-423f-bbc5-c872c1eddd4a_mirnaseq_gdc_realn.bam 274973094 BAM harmonized CPTAC3 c3d394e7-38c5-4202-86b8-781d5de97b5a 9111c7ad7d88b02ef3f4c457fa8ba649 { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor' } -C3L-02211.RNA-Seq.chimeric.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 7d9041b2-2791-4d14-9bed-ba35614593da.rna_seq.chimeric.gdc_realn.bam 76687845 BAM chimeric harmonized CPTAC3 0c4e5ffd-eadc-4a42-82aa-3e7563102137 83739acf76cf10c9d2298572e3023efe { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02211.RNA-Seq.chimeric.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 08d08906-90bb-4fc2-96a6-f4f1352bf3b0.rna_seq.chimeric.gdc_realn.bam 87379335 BAM chimeric harmonized CPTAC3 9568ffa8-169c-449d-99a8-fd8baff401e5 1839986424202e7b84278a7868bb13a3 { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor' } -C3L-02211.RNA-Seq.genomic.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 7d9041b2-2791-4d14-9bed-ba35614593da.rna_seq.genomic.gdc_realn.bam 9665950265 BAM genomic harmonized CPTAC3 cac575e4-6475-4ad8-9101-1afd3b067143 7ab06ff6c5d0b151c52581ed3e43dd60 { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02211.RNA-Seq.genomic.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 08d08906-90bb-4fc2-96a6-f4f1352bf3b0.rna_seq.genomic.gdc_realn.bam 8307453846 BAM genomic harmonized CPTAC3 ba5fbdd8-6482-4d19-9dd2-89121c83252b 31517bea8558f92350665d9d1d1ebb5b { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor' } -C3L-02211.RNA-Seq.R1_L003.T C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L003_R1_001.fastq.gz 3837650510 FASTQ R1_L003 unaligned CPTAC3 3734575e-f4f1-49e9-b8e9-659f90dd1a59 6388187f0dac37ba8c4abbff5e3be3a3 { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor' } -C3L-02211.RNA-Seq.R1_L005.A C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L005_R1_001.fastq.gz 4261517679 FASTQ R1_L005 unaligned CPTAC3 2a3d8d8a-a974-4899-b9b3-8e3827ea67c0 428918ce7b0c12eeb5b2fc565d900421 { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02211.RNA-Seq.R2_L003.T C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L003_R2_001.fastq.gz 4075759096 FASTQ R2_L003 unaligned CPTAC3 3f7da9a4-afe7-4a98-a6f4-c42a40b3d1ba 8ff155c41ccc101446ed3e6a9f86be6c { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor' } -C3L-02211.RNA-Seq.R2_L005.A C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L005_R2_001.fastq.gz 4693856104 FASTQ R2_L005 unaligned CPTAC3 94beab6e-ce2a-4376-95a3-6f319bff9e2d e2f734fbb19db047bd5ef75dc5f90832 { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02211.RNA-Seq.transcriptome.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 7d9041b2-2791-4d14-9bed-ba35614593da.rna_seq.transcriptome.gdc_realn.bam 9182289084 BAM transcriptome harmonized CPTAC3 1ec694bc-3ba7-4de0-a5e8-d761001ab229 1e008a24c533ba1ad90f8f3165a5500a { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02211.RNA-Seq.transcriptome.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 08d08906-90bb-4fc2-96a6-f4f1352bf3b0.rna_seq.transcriptome.gdc_realn.bam 8371084959 BAM transcriptome harmonized CPTAC3 9b429583-8744-4fa6-923f-50a50c69b882 3f1980b52babffca171e9cc7bbe6416b { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor' } +C3L-02211.RNA-Seq.chimeric.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 3b236a47-98b2-49f2-8595-fdaa59a38146.rna_seq.chimeric.gdc_realn.bam 76674249 BAM chimeric harmonized CPTAC3 fd79ff1e-e0ec-47ae-8f7a-9fe4f46b0162 6201c2ae110384865ede669dcc5ef7b2 { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02211.RNA-Seq.chimeric.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 acf4260f-027b-4453-8d68-381f168197e6.rna_seq.chimeric.gdc_realn.bam 87362412 BAM chimeric harmonized CPTAC3 fcda988c-7177-4d49-9a28-7d67db6f008c 3f2b4c2ffec886935f9432636dc69267 { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor' } +C3L-02211.RNA-Seq.genomic.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 3b236a47-98b2-49f2-8595-fdaa59a38146.rna_seq.genomic.gdc_realn.bam 9667198615 BAM genomic harmonized CPTAC3 92f684a5-3119-4680-bd3a-f192b8137af1 0603b3cf126777db792055fcdb393e1c { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02211.RNA-Seq.genomic.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 acf4260f-027b-4453-8d68-381f168197e6.rna_seq.genomic.gdc_realn.bam 8308246470 BAM genomic harmonized CPTAC3 0b8a0e14-8492-4fa3-9908-4fe51f66fa67 8f5bf04768a790f8a1e4ec37bbc7029b { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor' } +C3L-02211.RNA-Seq.R1_L003.T C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L003_R1_001.fastq.gz 3837650510 FASTQ R1_L003 unaligned CPTAC3 3734575e-f4f1-49e9-b8e9-659f90dd1a59 6388187f0dac37ba8c4abbff5e3be3a3 { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02211.RNA-Seq.R1_L005.A C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L005_R1_001.fastq.gz 4261517679 FASTQ R1_L005 unaligned CPTAC3 2a3d8d8a-a974-4899-b9b3-8e3827ea67c0 428918ce7b0c12eeb5b2fc565d900421 { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02211.RNA-Seq.R2_L003.T C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L003_R2_001.fastq.gz 4075759096 FASTQ R2_L003 unaligned CPTAC3 3f7da9a4-afe7-4a98-a6f4-c42a40b3d1ba 8ff155c41ccc101446ed3e6a9f86be6c { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02211.RNA-Seq.R2_L005.A C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L005_R2_001.fastq.gz 4693856104 FASTQ R2_L005 unaligned CPTAC3 94beab6e-ce2a-4376-95a3-6f319bff9e2d e2f734fbb19db047bd5ef75dc5f90832 { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02211.RNA-Seq.transcriptome.A.hg38 C3L-02211 CCRCC RNA-Seq tissue_normal CPT0127870006 3b236a47-98b2-49f2-8595-fdaa59a38146.rna_seq.transcriptome.gdc_realn.bam 10440770820 BAM transcriptome harmonized CPTAC3 2dd92c15-7be9-422c-b350-f089ead90e4f 0bdec35df72b393ed0111b6effe53527 { 'aliquot_tag': 'ALQ_3f2e8935', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02211.RNA-Seq.transcriptome.T.hg38 C3L-02211 CCRCC RNA-Seq tumor CPT0127860008 acf4260f-027b-4453-8d68-381f168197e6.rna_seq.transcriptome.gdc_realn.bam 9551076540 BAM transcriptome harmonized CPTAC3 7b88ec03-fb2c-4e05-964f-5733f350d61d 9af5ba79ebde70daba584db47cb8b2e8 { 'aliquot_tag': 'ALQ_e5f68d82', 'gdc_sample_type': 'Primary Tumor' } C3L-02211.WGS.N C3L-02211 CCRCC WGS blood_normal CPT0126630002 CPT0126630002.WholeGenome.RP-1303.bam 53322244529 BAM aligned CPTAC3 1f011ea2-ad6a-4d1a-9b9d-0d7f9279957b 0183396a9002e5290f5676ee370a51ba { 'aliquot_tag': 'ALQ_51be8128', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02211.WGS.N.hg38 C3L-02211 CCRCC WGS blood_normal CPT0126630002 d435d723-817c-4059-989a-a888406d22ed_wgs_gdc_realn.bam 77839644327 BAM harmonized CPTAC3 54cdcfad-7d64-49d1-a975-dec8b6315631 532a459e8c1e5e7082e635f39dbb8422 { 'aliquot_tag': 'ALQ_51be8128', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02211.WGS.T C3L-02211 CCRCC WGS tumor CPT0127860006 CPT0127860006.WholeGenome.RP-1303.bam 60583694480 BAM aligned CPTAC3 a60f9555-0225-4e0d-b783-7235ea259a26 e88db8b8a44f479287405e422a95ab94 { 'aliquot_tag': 'ALQ_24ea085', 'gdc_sample_type': 'Primary Tumor' } @@ -9747,16 +10459,16 @@ C3L-02212.miRNA-Seq.A C3L-02212 CCRCC miRNA-Seq tissue_normal CPT0389460006 2101 C3L-02212.miRNA-Seq.A.hg38 C3L-02212 CCRCC miRNA-Seq tissue_normal CPT0389460006 15d01bbe-834f-44f8-b796-d0569a77762a_mirnaseq_gdc_realn.bam 359534376 BAM harmonized CPTAC3 3be36556-d608-4c7f-a751-c4326319a0a2 4bb4548e438aae56d06cff3ebfa9cdbe { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02212.miRNA-Seq.T C3L-02212 CCRCC miRNA-Seq tumor CPT0389450009 210111_UNC32-K00270_0270_AHJ5LKBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 345248675 BAM unaligned CPTAC3 0bbc4ad8-b663-4a46-a139-1789329d42da a9a5dfdd0bee4bfefec2d67e70c74c8b { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor' } C3L-02212.miRNA-Seq.T.hg38 C3L-02212 CCRCC miRNA-Seq tumor CPT0389450009 8c8b6c5a-b43e-4650-9b3a-bd5486196b58_mirnaseq_gdc_realn.bam 371910243 BAM harmonized CPTAC3 3d13c724-b168-4966-9a8e-b25e7a23bd57 df878d416e0a31d744893633ff25ba1c { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-02212.RNA-Seq.chimeric.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 fa545699-ec3a-4728-9655-3e31e8fc98e6.rna_seq.chimeric.gdc_realn.bam 433912875 BAM chimeric harmonized CPTAC3 55c95a8e-b472-4e14-a5e4-3a9101542178 bdbb017c0ae950b5af920affa6e023ab { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02212.RNA-Seq.chimeric.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 df686669-673c-4287-8b50-8f3eb17b0195.rna_seq.chimeric.gdc_realn.bam 250252651 BAM chimeric harmonized CPTAC3 5806ddcb-6c62-4cf2-8161-8ebc621cfd7f 70615cf56e4691cde959fce96b7bd1cb { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-02212.RNA-Seq.genomic.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 fa545699-ec3a-4728-9655-3e31e8fc98e6.rna_seq.genomic.gdc_realn.bam 7803464006 BAM genomic harmonized CPTAC3 ef138156-22f9-4c49-a86e-a1861b83668b 1afd36ea3fc1becabec6c07a1e9f2f47 { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02212.RNA-Seq.genomic.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 df686669-673c-4287-8b50-8f3eb17b0195.rna_seq.genomic.gdc_realn.bam 6750150108 BAM genomic harmonized CPTAC3 45244d22-b93f-4441-9488-15ad6a6e8179 72b4b1cc4f7ef72e7a103f7a8c906246 { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-02212.RNA-Seq.R1_L003.A C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 210105_UNC32-K00270_0269_BHKN5MBBXY_GTCGGAGC-GGTTATAA_S11_L003_R1_001.fastq.gz 3497719425 FASTQ R1_L003 unaligned CPTAC3 18900f0a-a26d-498f-bfb0-30e04613d013 c8de071ef3d65f850730192457074983 { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02212.RNA-Seq.R1_L003.T C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 210105_UNC32-K00270_0269_BHKN5MBBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 3220450476 FASTQ R1_L003 unaligned CPTAC3 b6dfd7fd-e0a6-4c74-ac40-98222b29a5b9 e32ccac13ebc10d113dd81155c4f5d85 { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-02212.RNA-Seq.R2_L003.A C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 210105_UNC32-K00270_0269_BHKN5MBBXY_GTCGGAGC-GGTTATAA_S11_L003_R2_001.fastq.gz 4013916891 FASTQ R2_L003 unaligned CPTAC3 08361579-ffdf-4756-bdba-c701cc5f107e c2793fc02dfc08b121fb07fcdec1a630 { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02212.RNA-Seq.R2_L003.T C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 210105_UNC32-K00270_0269_BHKN5MBBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 3546736918 FASTQ R2_L003 unaligned CPTAC3 a1f6224c-a3dc-4f45-9929-6411132764a3 32455b5a034973e195aa6b6aeb45e105 { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-02212.RNA-Seq.transcriptome.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 fa545699-ec3a-4728-9655-3e31e8fc98e6.rna_seq.transcriptome.gdc_realn.bam 7105239579 BAM transcriptome harmonized CPTAC3 9baf45b4-1373-4e35-a1d8-4dd7db33a0f0 d843da14c0e2877c54788965f3002593 { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02212.RNA-Seq.transcriptome.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 df686669-673c-4287-8b50-8f3eb17b0195.rna_seq.transcriptome.gdc_realn.bam 6601351745 BAM transcriptome harmonized CPTAC3 1fcaec1f-601e-4b49-acd9-ca383cc7f8aa 4f02ee42b8bb107be336fa1b008234bb { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor' } +C3L-02212.RNA-Seq.chimeric.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 00ade2f3-802c-428b-b63c-d011e73d1f47.rna_seq.chimeric.gdc_realn.bam 433928123 BAM chimeric harmonized CPTAC3 6cf1758a-4b51-4aec-aab6-20c7783cb916 6cbee8459e10b094ef7e22e431196a79 { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02212.RNA-Seq.chimeric.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 94a09021-43ce-4c8a-afe9-de67e8c69b42.rna_seq.chimeric.gdc_realn.bam 250265936 BAM chimeric harmonized CPTAC3 4a739bf0-3c65-471b-8885-d74976ddf298 af1bceb40dc6be2e0adec6c00cc833d4 { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor' } +C3L-02212.RNA-Seq.genomic.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 00ade2f3-802c-428b-b63c-d011e73d1f47.rna_seq.genomic.gdc_realn.bam 7809179218 BAM genomic harmonized CPTAC3 b30fc29e-5976-4550-8aa7-caf4bd7646f4 dd918b94b0c3bc8b997ccfeba5f25839 { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02212.RNA-Seq.genomic.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 94a09021-43ce-4c8a-afe9-de67e8c69b42.rna_seq.genomic.gdc_realn.bam 6755871833 BAM genomic harmonized CPTAC3 3e47096f-3602-41ad-badf-4546d2b7c5fc e9dd7ab4f06701a6723306d8962c6604 { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor' } +C3L-02212.RNA-Seq.R1_L003.A C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 210105_UNC32-K00270_0269_BHKN5MBBXY_GTCGGAGC-GGTTATAA_S11_L003_R1_001.fastq.gz 3497719425 FASTQ R1_L003 unaligned CPTAC3 18900f0a-a26d-498f-bfb0-30e04613d013 c8de071ef3d65f850730192457074983 { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-02212.RNA-Seq.R1_L003.T C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 210105_UNC32-K00270_0269_BHKN5MBBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 3220450476 FASTQ R1_L003 unaligned CPTAC3 b6dfd7fd-e0a6-4c74-ac40-98222b29a5b9 e32ccac13ebc10d113dd81155c4f5d85 { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02212.RNA-Seq.R2_L003.A C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 210105_UNC32-K00270_0269_BHKN5MBBXY_GTCGGAGC-GGTTATAA_S11_L003_R2_001.fastq.gz 4013916891 FASTQ R2_L003 unaligned CPTAC3 08361579-ffdf-4756-bdba-c701cc5f107e c2793fc02dfc08b121fb07fcdec1a630 { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-02212.RNA-Seq.R2_L003.T C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 210105_UNC32-K00270_0269_BHKN5MBBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 3546736918 FASTQ R2_L003 unaligned CPTAC3 a1f6224c-a3dc-4f45-9929-6411132764a3 32455b5a034973e195aa6b6aeb45e105 { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02212.RNA-Seq.transcriptome.A.hg38 C3L-02212 CCRCC RNA-Seq tissue_normal CPT0389460006 00ade2f3-802c-428b-b63c-d011e73d1f47.rna_seq.transcriptome.gdc_realn.bam 8107275388 BAM transcriptome harmonized CPTAC3 55c428a7-0b23-4e89-af6c-6425c2d1427a 68f4de4dd63e0a9eba6669f59c43054c { 'aliquot_tag': 'ALQ_9a852fed', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02212.RNA-Seq.transcriptome.T.hg38 C3L-02212 CCRCC RNA-Seq tumor CPT0389450009 94a09021-43ce-4c8a-afe9-de67e8c69b42.rna_seq.transcriptome.gdc_realn.bam 7540878003 BAM transcriptome harmonized CPTAC3 64b4929c-96b4-4b7b-b316-752c71616f63 7c3d3c3ae5c6fae71cd3308c709394ca { 'aliquot_tag': 'ALQ_4d9a48ac', 'gdc_sample_type': 'Primary Tumor' } C3L-02212.WGS.N C3L-02212 CCRCC WGS blood_normal CPT0389550002 CPT0389550002.WholeGenome.RP-2158.bam 27965064197 BAM aligned CPTAC3 aba5203b-9c1a-4911-b05b-6af1110cfa36 95b28ff8c4f6eca568a341b732882852 { 'aliquot_tag': 'ALQ_11144281', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02212.WGS.N.hg38 C3L-02212 CCRCC WGS blood_normal CPT0389550002 88ba4cad-fb6d-4b71-8659-89062560a40d_wgs_gdc_realn.bam 83941558361 BAM harmonized CPTAC3 387ba7c9-e96b-4e06-bfe8-608f41402e3f 06185458f6db54c6da81994127cec46c { 'aliquot_tag': 'ALQ_11144281', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02212.WGS.T C3L-02212 CCRCC WGS tumor CPT0389450006 CPT0389450006.WholeGenome.RP-2158.bam 25650571429 BAM aligned CPTAC3 1c129e7b-697e-4e1a-a1a4-f4a536c14790 706bd5ce76a20a89ad9a738bd447db12 { 'aliquot_tag': 'ALQ_dd25553d', 'gdc_sample_type': 'Primary Tumor' } @@ -9769,11 +10481,11 @@ C3L-02214.MethArray.Green.T C3L-02214 CCRCC Methylation Array tumor CPT012792000 C3L-02214.MethArray.Red.T C3L-02214 CCRCC Methylation Array tumor CPT0127920006 203219640047_R04C01_Red.idat 13676206 IDAT Red NA CPTAC3 03439867-2ce6-4072-ba56-dd4c4a19a57d 06450b58c397a9b325b708e6e13061a3 { 'aliquot_tag': 'ALQ_3c92d5e0', 'gdc_sample_type': 'Primary Tumor' } C3L-02214.miRNA-Seq.T C3L-02214 CCRCC miRNA-Seq tumor CPT0127920008 190108_UNC31-K00269_0176_AHYGLVBBXX_TTAGGC_S3_L004_R1_001.unaln.bam 205652870 BAM unaligned CPTAC3 5d04b939-cddd-4a57-9a01-f08560880a35 182ddb70607c74b0cfdb279ae8f67763 { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor' } C3L-02214.miRNA-Seq.T.hg38 C3L-02214 CCRCC miRNA-Seq tumor CPT0127920008 ef2abf2a-a4cd-4816-81a6-91878425d5d9_mirnaseq_gdc_realn.bam 235963168 BAM harmonized CPTAC3 204a3f95-87ea-47c2-a2e9-dc0877de83dc 36a521bcc2dbccb206451c500adc70a6 { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-02214.RNA-Seq.chimeric.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 24ba1b38-373e-424b-a8c3-fcfaa7bd0ec3.rna_seq.chimeric.gdc_realn.bam 63528870 BAM chimeric harmonized CPTAC3 a24410aa-088b-4ee4-910e-11ba2fef6926 544b6b512c2ef6eea4dd8c62285a5ba7 { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-02214.RNA-Seq.genomic.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 24ba1b38-373e-424b-a8c3-fcfaa7bd0ec3.rna_seq.genomic.gdc_realn.bam 8204327841 BAM genomic harmonized CPTAC3 faae08fa-d859-4b46-9ad5-34bc1e7a7c58 24791bfdf36d8b0e2ce8d88c873d8d32 { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-02214.RNA-Seq.R1_L003.T C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L003_R1_001.fastq.gz 3722281711 FASTQ R1_L003 unaligned CPTAC3 3ac2c4d5-1263-40d2-a4c8-463402e34374 890692f625e57c3d58b5ce97715f6875 { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-02214.RNA-Seq.R2_L003.T C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L003_R2_001.fastq.gz 4021584290 FASTQ R2_L003 unaligned CPTAC3 67079328-05bc-49bd-b6a2-a24ee5b75d40 dc7ff3b399df9ffe516b2087d4a52732 { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-02214.RNA-Seq.transcriptome.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 24ba1b38-373e-424b-a8c3-fcfaa7bd0ec3.rna_seq.transcriptome.gdc_realn.bam 8105613578 BAM transcriptome harmonized CPTAC3 1156854a-5c38-4ddd-8c57-02b9abc2df7b 65b98f7efab4cdc9644890925f9473ed { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-02214.RNA-Seq.chimeric.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 dbbc4ea9-cb57-481a-84c7-43fab150348a.rna_seq.chimeric.gdc_realn.bam 63506775 BAM chimeric harmonized CPTAC3 555e37b8-c7db-451c-a9ac-6fa4b751de61 c552c74e6781e5b66b429f5777e40dec { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-02214.RNA-Seq.genomic.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 dbbc4ea9-cb57-481a-84c7-43fab150348a.rna_seq.genomic.gdc_realn.bam 8204528860 BAM genomic harmonized CPTAC3 8789598f-a95a-4a4e-b41b-9e07db19b507 4103a3494b7e5f67ddc9189ef5f21b11 { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-02214.RNA-Seq.R1_L003.T C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L003_R1_001.fastq.gz 3722281711 FASTQ R1_L003 unaligned CPTAC3 3ac2c4d5-1263-40d2-a4c8-463402e34374 890692f625e57c3d58b5ce97715f6875 { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02214.RNA-Seq.R2_L003.T C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L003_R2_001.fastq.gz 4021584290 FASTQ R2_L003 unaligned CPTAC3 67079328-05bc-49bd-b6a2-a24ee5b75d40 dc7ff3b399df9ffe516b2087d4a52732 { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02214.RNA-Seq.transcriptome.T.hg38 C3L-02214 CCRCC RNA-Seq tumor CPT0127920008 dbbc4ea9-cb57-481a-84c7-43fab150348a.rna_seq.transcriptome.gdc_realn.bam 9230135938 BAM transcriptome harmonized CPTAC3 0ae249ee-3c3b-45c9-86d9-06861a20d2be 5dd714e16a84b40e9861ca0da460d61f { 'aliquot_tag': 'ALQ_db2af8e7', 'gdc_sample_type': 'Primary Tumor' } C3L-02214.WGS.N C3L-02214 CCRCC WGS blood_normal CPT0126590002 CPT0126590002.WholeGenome.RP-1303.bam 52017495298 BAM aligned CPTAC3 3204a451-9657-4d6f-b864-53a999c01c29 9fc1f5ce0f1f61b623f34c772d28b854 { 'aliquot_tag': 'ALQ_9d9aeb27', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02214.WGS.N.hg38 C3L-02214 CCRCC WGS blood_normal CPT0126590002 a85adbcf-2937-4743-b96c-fc696acc8ebf_wgs_gdc_realn.bam 76052930745 BAM harmonized CPTAC3 fbc38c8d-ab6b-4991-9508-c938afdac03e fbb907ad71d4efca9f5682cba067965a { 'aliquot_tag': 'ALQ_9d9aeb27', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02214.WGS.T C3L-02214 CCRCC WGS tumor CPT0127920006 CPT0127920006.WholeGenome.RP-1303.bam 59554586201 BAM aligned CPTAC3 0e022492-2a9a-4c8a-b3f6-dc57d75bbe91 537ba15148011f28f05476fdd7d179a4 { 'aliquot_tag': 'ALQ_3c92d5e0', 'gdc_sample_type': 'Primary Tumor' } @@ -9788,16 +10500,16 @@ C3L-02216.miRNA-Seq.A C3L-02216 UCEC miRNA-Seq tissue_normal CPT0104710009 18111 C3L-02216.miRNA-Seq.A.hg38 C3L-02216 UCEC miRNA-Seq tissue_normal CPT0104710009 5c12af7e-e45b-42c2-8ffa-d6dfb6709d23_mirnaseq_gdc_realn.bam 296938274 BAM harmonized CPTAC3 6b2357c7-284c-4691-a833-617228a5ae68 1f35c8b96ad0963e85855af93668bc94 { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02216.miRNA-Seq.T C3L-02216 UCEC miRNA-Seq tumor CPT0104690006 181108_UNC31-K00269_0163_BH23TVBBXY_CTCAGA_S40_L007_R1_001.unaln.bam 185906214 BAM unaligned CPTAC3 e1f69030-7b09-45cc-a6a5-106a8bc2fce7 78f70cd059bb55cb02df69e46a7ee93a { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor' } C3L-02216.miRNA-Seq.T.hg38 C3L-02216 UCEC miRNA-Seq tumor CPT0104690006 1081ae81-bb4b-419a-bd10-a587c0bc4e99_mirnaseq_gdc_realn.bam 204233064 BAM harmonized CPTAC3 1003c656-d8b3-42da-9270-67c05593bf01 1d87d21f82ad5df8af21d598dd56365a { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02216.RNA-Seq.chimeric.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 e0c4ac58-571d-458a-8e44-374eef2f9832.rna_seq.chimeric.gdc_realn.bam 42396602 BAM chimeric harmonized CPTAC3 ba87f114-8a4c-47bd-9434-b160eed8e0ab a7bbd731774a3ec5d0f75b6450fc80bf { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02216.RNA-Seq.chimeric.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 ef7c6484-2fd2-4d14-8597-b7cb5bf7dcb8.rna_seq.chimeric.gdc_realn.bam 30439727 BAM chimeric harmonized CPTAC3 887557a5-df45-440a-92d8-272699472c69 179363c83a9245e9fd498c22c2b8dd81 { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02216.RNA-Seq.genomic.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 e0c4ac58-571d-458a-8e44-374eef2f9832.rna_seq.genomic.gdc_realn.bam 9776190268 BAM genomic harmonized CPTAC3 57537bd7-3858-4662-af72-49083c5b8efb 50d288b705b671a06c2880c8096c1069 { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02216.RNA-Seq.genomic.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 ef7c6484-2fd2-4d14-8597-b7cb5bf7dcb8.rna_seq.genomic.gdc_realn.bam 8799281108 BAM genomic harmonized CPTAC3 3cb99e3e-a9cb-4359-86d9-522eaf409565 025faa69818433f192be79c8deabe5b1 { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02216.RNA-Seq.R1_L004.A C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4205289055 FASTQ R1_L004 unaligned CPTAC3 a3b7d606-ff64-418d-b95f-74010da8202e b557f610cdd95c9619d1b8f7930c4ac8 { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02216.RNA-Seq.R1_L006.T C3L-02216 UCEC RNA-Seq tumor CPT0104690006 171109_UNC31-K00269_0090_AHLHNWBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4204635447 FASTQ R1_L006 unaligned CPTAC3 05dbfd5a-a757-41dd-841e-7e47058cd397 2f6a37ab942f03b12e9c13a7e35d5915 { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02216.RNA-Seq.R2_L004.A C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4579121509 FASTQ R2_L004 unaligned CPTAC3 33a70dd5-22ca-4d04-a209-1bfd724a113c c2c7d2b4c6e007e853fbeeaa7ba351e0 { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02216.RNA-Seq.R2_L006.T C3L-02216 UCEC RNA-Seq tumor CPT0104690006 171109_UNC31-K00269_0090_AHLHNWBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4693675998 FASTQ R2_L006 unaligned CPTAC3 7b873d63-5837-4ecc-9b74-ba55e5591189 d736a4d139710cd38e2bffda346a0c16 { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02216.RNA-Seq.transcriptome.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 e0c4ac58-571d-458a-8e44-374eef2f9832.rna_seq.transcriptome.gdc_realn.bam 10052399096 BAM transcriptome harmonized CPTAC3 4f04db43-5e52-4e71-bb1f-5e3c488229e3 4fd617cd0bfc66833716084f6ee4c9f0 { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02216.RNA-Seq.transcriptome.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 ef7c6484-2fd2-4d14-8597-b7cb5bf7dcb8.rna_seq.transcriptome.gdc_realn.bam 10101497887 BAM transcriptome harmonized CPTAC3 652104f0-e8bf-42e0-8d03-b7a4ec7dd642 cdcf4266446271e7d3c1b1e86650e7a4 { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02216.RNA-Seq.chimeric.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 b00f53b5-39dd-4380-9ee8-d78e34c48a9e.rna_seq.chimeric.gdc_realn.bam 42350640 BAM chimeric harmonized CPTAC3 a68f339b-6cde-4b1b-b096-9eb977980cca 6063d493c5f268dc0c1aa05b75eafb53 { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02216.RNA-Seq.chimeric.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 a4c2c1fc-97df-4f3d-9bea-e9ba45a4a8b2.rna_seq.chimeric.gdc_realn.bam 30419770 BAM chimeric harmonized CPTAC3 06a878af-4a7c-4ff5-a39d-ef66a89f2f4c d6f866de53619d119ad1626427ec1b4f { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02216.RNA-Seq.genomic.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 b00f53b5-39dd-4380-9ee8-d78e34c48a9e.rna_seq.genomic.gdc_realn.bam 9777421099 BAM genomic harmonized CPTAC3 0a062262-e8c6-4b32-b73a-a231898730e5 ecd653fe6543196d74907c0cf2e3a34f { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02216.RNA-Seq.genomic.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 a4c2c1fc-97df-4f3d-9bea-e9ba45a4a8b2.rna_seq.genomic.gdc_realn.bam 8799924259 BAM genomic harmonized CPTAC3 46fc3060-f6aa-4436-8294-af2b35edcd43 3b412fe7ac8d1bae91a36b5458d4b909 { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02216.RNA-Seq.R1_L004.A C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4205289055 FASTQ R1_L004 unaligned CPTAC3 a3b7d606-ff64-418d-b95f-74010da8202e b557f610cdd95c9619d1b8f7930c4ac8 { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02216.RNA-Seq.R1_L006.T C3L-02216 UCEC RNA-Seq tumor CPT0104690006 171109_UNC31-K00269_0090_AHLHNWBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4204635447 FASTQ R1_L006 unaligned CPTAC3 05dbfd5a-a757-41dd-841e-7e47058cd397 2f6a37ab942f03b12e9c13a7e35d5915 { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02216.RNA-Seq.R2_L004.A C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4579121509 FASTQ R2_L004 unaligned CPTAC3 33a70dd5-22ca-4d04-a209-1bfd724a113c c2c7d2b4c6e007e853fbeeaa7ba351e0 { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-02216.RNA-Seq.R2_L006.T C3L-02216 UCEC RNA-Seq tumor CPT0104690006 171109_UNC31-K00269_0090_AHLHNWBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4693675998 FASTQ R2_L006 unaligned CPTAC3 7b873d63-5837-4ecc-9b74-ba55e5591189 d736a4d139710cd38e2bffda346a0c16 { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-02216.RNA-Seq.transcriptome.A.hg38 C3L-02216 UCEC RNA-Seq tissue_normal CPT0104710009 b00f53b5-39dd-4380-9ee8-d78e34c48a9e.rna_seq.transcriptome.gdc_realn.bam 11598916487 BAM transcriptome harmonized CPTAC3 68166715-22bc-4a6b-ac82-eb43536f22d8 30117977bd3f7ad1a786ca008a2921c3 { 'aliquot_tag': 'ALQ_a24ace31', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02216.RNA-Seq.transcriptome.T.hg38 C3L-02216 UCEC RNA-Seq tumor CPT0104690006 a4c2c1fc-97df-4f3d-9bea-e9ba45a4a8b2.rna_seq.transcriptome.gdc_realn.bam 11570462527 BAM transcriptome harmonized CPTAC3 de65d58a-6d85-4a59-ba06-d1fb48c2ff59 64368ee39212ddc0f71bc516050a7b99 { 'aliquot_tag': 'ALQ_c9d94bc4', 'gdc_sample_type': 'Primary Tumor' } C3L-02216.WGS.A C3L-02216 UCEC WGS tissue_normal CPT0104710006 CPT0104710006.WholeGenome.RP-1303.bam 61403252971 BAM aligned CPTAC3 1cc2a9b7-954b-42e6-ad60-0c8facc97bce 9d13319562108fda821f8ec8346b22c9 { 'aliquot_tag': 'ALQ_32f5d3a0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02216.WGS.A.hg38 C3L-02216 UCEC WGS tissue_normal CPT0104710006 9219b702-e723-4d6a-b2a3-a09dbd583c05_wgs_gdc_realn.bam 90050451261 BAM harmonized CPTAC3 a1b49a9a-fa41-4f34-adc9-943ec4d86a98 0e6c9b8aed869e747c49700503e703d5 { 'aliquot_tag': 'ALQ_32f5d3a0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02216.WGS.N C3L-02216 UCEC WGS blood_normal CPT0105150002 CPT0105150002.WholeGenome.RP-1303.bam 71976253545 BAM aligned CPTAC3 315ac510-9294-4a95-9e8a-4054f577eafe 821709fc31648f6217898243007cd045 { 'aliquot_tag': 'ALQ_b03659d0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9820,12 +10532,12 @@ C3L-02219.miRNA-Seq.T C3L-02219 LUAD miRNA-Seq tumor CPT0104630006 181108_UNC31- C3L-02219.miRNA-Seq.T.hg38 C3L-02219 LUAD miRNA-Seq tumor CPT0104630006 9629c530-8c91-48de-8852-c06a2fc12eb0_mirnaseq_gdc_realn.bam 256916755 BAM harmonized CPTAC3 1cf39c8e-381b-4945-bf56-4e3f16d7c0da e8e81a845c3eb858262e1a092f875fae { 'aliquot_tag': 'ALQ_83695365', 'gdc_sample_type': 'Primary Tumor' } C3L-02219.RNA-Seq.chimeric.A.hg38 C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 bd6344b2-bc0c-4787-a1ad-145522dc8df9.rna_seq.chimeric.gdc_realn.bam 83388847 BAM chimeric harmonized CPTAC3 1352afa7-a6a9-4365-812a-c0624c843527 4977e956cb172761b5f47436e9df2712 { 'aliquot_tag': 'ALQ_c29a6c5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02219.RNA-Seq.chimeric.T.hg38 C3L-02219 LUAD RNA-Seq tumor CPT0104630006 d7d9f7aa-3ac1-454e-b5f8-176bff51d9f6.rna_seq.chimeric.gdc_realn.bam 34519023 BAM chimeric harmonized CPTAC3 38ed323a-5c0a-40df-96a5-56e6f6cfe110 941f5a5f9ef4fa9fc342dbcc27168e63 { 'aliquot_tag': 'ALQ_83695365', 'gdc_sample_type': 'Primary Tumor' } -C3L-02219.RNA-Seq.genomic.A.hg38 C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 bd6344b2-bc0c-4787-a1ad-145522dc8df9.rna_seq.genomic.gdc_realn.bam 8460656998 BAM genomic harmonized CPTAC3 571fc4f4-990a-4e6d-9f15-fef22ec61c00 e60e793c7f2e256de08665e369733bc9 { 'aliquot_tag': 'ALQ_c29a6c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02219.RNA-Seq.genomic.T.hg38 C3L-02219 LUAD RNA-Seq tumor CPT0104630006 d7d9f7aa-3ac1-454e-b5f8-176bff51d9f6.rna_seq.genomic.gdc_realn.bam 8665283399 BAM genomic harmonized CPTAC3 0b19834f-e729-4252-807c-e93e445b854c 3a60a3a89d7f52c853f68f3c941928c6 { 'aliquot_tag': 'ALQ_83695365', 'gdc_sample_type': 'Primary Tumor' } -C3L-02219.RNA-Seq.R1_L003.A C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 171215_UNC32-K00270_0073_BHN3NFBBXX_CTTGTA_S11_L003_R1_001.fastq.gz 4090146805 FASTQ R1_L003 unaligned CPTAC3 ade14353-6a49-415f-adee-3ee3ace2433a b443017477dc3c0849e2f0c3103b8776 { 'aliquot_tag': 'ALQ_c29a6c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02219.RNA-Seq.R1_L006.T C3L-02219 LUAD RNA-Seq tumor CPT0104630006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L006_R1_001.fastq.gz 3890348910 FASTQ R1_L006 unaligned CPTAC3 5f11ff6e-478d-4f11-9736-0db21ae7280b 698fc92260ac4fca4e84665fde1c1017 { 'aliquot_tag': 'ALQ_83695365', 'gdc_sample_type': 'Primary Tumor' } -C3L-02219.RNA-Seq.R2_L003.A C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 171215_UNC32-K00270_0073_BHN3NFBBXX_CTTGTA_S11_L003_R2_001.fastq.gz 4521366772 FASTQ R2_L003 unaligned CPTAC3 bf847923-a173-4bd4-a150-7fdd5b7436da 4689e23407b86d281ff0f4c24d633ba1 { 'aliquot_tag': 'ALQ_c29a6c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02219.RNA-Seq.R2_L006.T C3L-02219 LUAD RNA-Seq tumor CPT0104630006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L006_R2_001.fastq.gz 4346562848 FASTQ R2_L006 unaligned CPTAC3 ff174056-89d3-47c0-a676-33b2d1ffd271 dbbc089cc51084b460fcd397d3d46d9c { 'aliquot_tag': 'ALQ_83695365', 'gdc_sample_type': 'Primary Tumor' } +C3L-02219.RNA-Seq.genomic.A.hg38 C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 bd6344b2-bc0c-4787-a1ad-145522dc8df9.rna_seq.genomic.gdc_realn.bam 8460656998 BAM genomic harmonized CPTAC3 bd0bdd4c-20c4-420b-aa7f-79fd33abba3a e60e793c7f2e256de08665e369733bc9 { 'aliquot_tag': 'ALQ_c29a6c5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02219.RNA-Seq.genomic.T.hg38 C3L-02219 LUAD RNA-Seq tumor CPT0104630006 d7d9f7aa-3ac1-454e-b5f8-176bff51d9f6.rna_seq.genomic.gdc_realn.bam 8665283399 BAM genomic harmonized CPTAC3 c2b1bb9d-65fd-4568-b6de-cc01a74a0c50 3a60a3a89d7f52c853f68f3c941928c6 { 'aliquot_tag': 'ALQ_83695365', 'gdc_sample_type': 'Primary Tumor' } +C3L-02219.RNA-Seq.R1_L003.A C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 171215_UNC32-K00270_0073_BHN3NFBBXX_CTTGTA_S11_L003_R1_001.fastq.gz 4090146805 FASTQ R1_L003 unaligned CPTAC3 ade14353-6a49-415f-adee-3ee3ace2433a b443017477dc3c0849e2f0c3103b8776 { 'aliquot_tag': 'ALQ_c29a6c5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-02219.RNA-Seq.R1_L006.T C3L-02219 LUAD RNA-Seq tumor CPT0104630006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L006_R1_001.fastq.gz 3890348910 FASTQ R1_L006 unaligned CPTAC3 5f11ff6e-478d-4f11-9736-0db21ae7280b 698fc92260ac4fca4e84665fde1c1017 { 'aliquot_tag': 'ALQ_83695365', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02219.RNA-Seq.R2_L003.A C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 171215_UNC32-K00270_0073_BHN3NFBBXX_CTTGTA_S11_L003_R2_001.fastq.gz 4521366772 FASTQ R2_L003 unaligned CPTAC3 bf847923-a173-4bd4-a150-7fdd5b7436da 4689e23407b86d281ff0f4c24d633ba1 { 'aliquot_tag': 'ALQ_c29a6c5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-02219.RNA-Seq.R2_L006.T C3L-02219 LUAD RNA-Seq tumor CPT0104630006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACAGTG_S19_L006_R2_001.fastq.gz 4346562848 FASTQ R2_L006 unaligned CPTAC3 ff174056-89d3-47c0-a676-33b2d1ffd271 dbbc089cc51084b460fcd397d3d46d9c { 'aliquot_tag': 'ALQ_83695365', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02219.RNA-Seq.transcriptome.A.hg38 C3L-02219 LUAD RNA-Seq tissue_normal CPT0104650006 bd6344b2-bc0c-4787-a1ad-145522dc8df9.rna_seq.transcriptome.gdc_realn.bam 10678865204 BAM transcriptome harmonized CPTAC3 11883439-c187-48c9-baf3-2f67d1183b5a 0a8f540283dc1bcdd8bf6454d8260490 { 'aliquot_tag': 'ALQ_c29a6c5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02219.RNA-Seq.transcriptome.T.hg38 C3L-02219 LUAD RNA-Seq tumor CPT0104630006 d7d9f7aa-3ac1-454e-b5f8-176bff51d9f6.rna_seq.transcriptome.gdc_realn.bam 11436062083 BAM transcriptome harmonized CPTAC3 37747f50-d6ee-4d80-a759-c6e38c1c024f 6261d71b0958c65f0a6177c28ee9931f { 'aliquot_tag': 'ALQ_83695365', 'gdc_sample_type': 'Primary Tumor' } C3L-02219.WGS.A C3L-02219 LUAD WGS tissue_normal CPT0104650009 CPT0104650009.WholeGenome.RP-1303.bam 52067264142 BAM aligned CPTAC3 52073d5c-cb9a-4373-9aa6-b3a7fbfc0462 35c5a740e9d799e6dd3a90672fcedf26 { 'aliquot_tag': 'ALQ_9c96bb54', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -9846,16 +10558,16 @@ C3L-02220.MethArray.Red.A C3L-02220 CCRCC Methylation Array tissue_normal CPT010 C3L-02220.MethArray.Red.T C3L-02220 CCRCC Methylation Array tumor CPT0104550009 202234380064_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 5ebc7209-59ed-4529-bbc9-559f31974934 9f0af6eaab8a9d4596f52b56a41eeb94 { 'aliquot_tag': 'ALQ_1a02c9fa', 'gdc_sample_type': 'Primary Tumor' } C3L-02220.miRNA-Seq.T C3L-02220 CCRCC miRNA-Seq tumor CPT0104550006 181108_UNC31-K00269_0163_BH23TVBBXY_CTAGCT_S38_L007_R1_001.unaln.bam 286705573 BAM unaligned CPTAC3 93286439-f23d-4270-830a-c6ce55c2b26c c769242c49e917351f559a1942b4f41f { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor' } C3L-02220.miRNA-Seq.T.hg38 C3L-02220 CCRCC miRNA-Seq tumor CPT0104550006 1084d604-caa5-4799-9b3a-3eb2b9cd7959_mirnaseq_gdc_realn.bam 315711123 BAM harmonized CPTAC3 13e804e0-810c-4c54-8b20-e0ff18f5ba7d e9378103d2e7679b2582df68a2096b94 { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02220.RNA-Seq.chimeric.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 c78443e4-4959-42dc-9db9-def5166b8c81.rna_seq.chimeric.gdc_realn.bam 21423700 BAM chimeric harmonized CPTAC3 6e6a400d-57f7-4a5f-9643-e2ed2665c853 04f66600256118e2dac84f0a69da8814 { 'aliquot_tag': 'ALQ_e2920d4b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02220.RNA-Seq.chimeric.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 16bbbb75-6cab-4a47-b9d9-719ba02e17d3.rna_seq.chimeric.gdc_realn.bam 38269647 BAM chimeric harmonized CPTAC3 dfbed6ec-d427-4379-b6b6-e8eba86123fb d532b19b5bc58f0ba34d11bafe60b101 { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02220.RNA-Seq.genomic.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 c78443e4-4959-42dc-9db9-def5166b8c81.rna_seq.genomic.gdc_realn.bam 6879365586 BAM genomic harmonized CPTAC3 7ea71e9d-fe17-4f1d-b36e-b5a57a827e41 b058d7a6bff5745d9d96cc94352621ad { 'aliquot_tag': 'ALQ_e2920d4b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02220.RNA-Seq.genomic.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 16bbbb75-6cab-4a47-b9d9-719ba02e17d3.rna_seq.genomic.gdc_realn.bam 8322168058 BAM genomic harmonized CPTAC3 2283906b-eb8a-455d-b4e5-2a99f2c3204a ac4cf7c6ee78b098be93c0c99489cd9a { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02220.RNA-Seq.R1_L007.T C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L007_R1_001.fastq.gz 3921696675 FASTQ R1_L007 unaligned CPTAC3 bcf85c94-d8cd-46ff-a2df-161588ca1f6f f62a18d22f922c9385b131f65bc87ad8 { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02220.RNA-Seq.R1_L008.A C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L008_R1_001.fastq.gz 3177019934 FASTQ R1_L008 unaligned CPTAC3 7ba1a462-a098-4878-be3d-d1cbab10a167 8d1606e5aaf7ef3dbf0b77aa4eeab671 { 'aliquot_tag': 'ALQ_e2920d4b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02220.RNA-Seq.R2_L007.T C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4244846603 FASTQ R2_L007 unaligned CPTAC3 f6afce03-6c2f-4991-aea2-79eed1c82fd7 4cd4c9a0fae3da102ed1ee40af2ee494 { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02220.RNA-Seq.R2_L008.A C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L008_R2_001.fastq.gz 3303631613 FASTQ R2_L008 unaligned CPTAC3 5a913799-c4f1-45e8-af63-51b364415df8 4f542ff029c8a74d1a3280855ee6317b { 'aliquot_tag': 'ALQ_e2920d4b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02220.RNA-Seq.transcriptome.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 c78443e4-4959-42dc-9db9-def5166b8c81.rna_seq.transcriptome.gdc_realn.bam 7438174860 BAM transcriptome harmonized CPTAC3 8082c849-a478-4b98-beea-fe0fadfd7ba9 208e2df3da898f95d30d68561f1a656a { 'aliquot_tag': 'ALQ_e2920d4b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02220.RNA-Seq.transcriptome.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 16bbbb75-6cab-4a47-b9d9-719ba02e17d3.rna_seq.transcriptome.gdc_realn.bam 9702668060 BAM transcriptome harmonized CPTAC3 71a1688f-3060-4606-981f-958499dc1883 30020a9c27e0bbd86ba4335bc9d6aa2d { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02220.RNA-Seq.chimeric.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 6dc77b16-45ac-422f-a70e-aa144536575b.rna_seq.chimeric.gdc_realn.bam 21410300 BAM chimeric harmonized CPTAC3 fc99ab3a-f985-4f62-b6ec-9a71e73ff191 01f01da56f5ac7cdb2717e67c2081d54 { 'aliquot_tag': 'ALQ_e2920d4b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02220.RNA-Seq.chimeric.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 3fb71aeb-a66e-4b97-a09b-ca87673f4b36.rna_seq.chimeric.gdc_realn.bam 38246344 BAM chimeric harmonized CPTAC3 49d11ccd-6db1-48bf-814d-e4513122f8a9 2c8cc3d9bc2d46883046801f7f033f32 { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02220.RNA-Seq.genomic.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 6dc77b16-45ac-422f-a70e-aa144536575b.rna_seq.genomic.gdc_realn.bam 6880264495 BAM genomic harmonized CPTAC3 e0496c94-cfe5-47c9-9363-7fecabbc9da9 c5d39a010436c988730457c8c2813e70 { 'aliquot_tag': 'ALQ_e2920d4b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02220.RNA-Seq.genomic.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 3fb71aeb-a66e-4b97-a09b-ca87673f4b36.rna_seq.genomic.gdc_realn.bam 8322379383 BAM genomic harmonized CPTAC3 e79fd7c7-414d-4f87-bc2a-bcea68707013 16e3081ef890a0834282d709fa77abda { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02220.RNA-Seq.R1_L007.T C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L007_R1_001.fastq.gz 3921696675 FASTQ R1_L007 unaligned CPTAC3 bcf85c94-d8cd-46ff-a2df-161588ca1f6f f62a18d22f922c9385b131f65bc87ad8 { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02220.RNA-Seq.R1_L008.A C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L008_R1_001.fastq.gz 3177019934 FASTQ R1_L008 unaligned CPTAC3 7ba1a462-a098-4878-be3d-d1cbab10a167 8d1606e5aaf7ef3dbf0b77aa4eeab671 { 'aliquot_tag': 'ALQ_e2920d4b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02220.RNA-Seq.R2_L007.T C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4244846603 FASTQ R2_L007 unaligned CPTAC3 f6afce03-6c2f-4991-aea2-79eed1c82fd7 4cd4c9a0fae3da102ed1ee40af2ee494 { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02220.RNA-Seq.R2_L008.A C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L008_R2_001.fastq.gz 3303631613 FASTQ R2_L008 unaligned CPTAC3 5a913799-c4f1-45e8-af63-51b364415df8 4f542ff029c8a74d1a3280855ee6317b { 'aliquot_tag': 'ALQ_e2920d4b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02220.RNA-Seq.transcriptome.A.hg38 C3L-02220 CCRCC RNA-Seq tissue_normal CPT0104580009 6dc77b16-45ac-422f-a70e-aa144536575b.rna_seq.transcriptome.gdc_realn.bam 8488730235 BAM transcriptome harmonized CPTAC3 acd5b40e-d96b-4af2-b13c-118c3087c9ae b65682fb93c1de19c106344f831986d4 { 'aliquot_tag': 'ALQ_e2920d4b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02220.RNA-Seq.transcriptome.T.hg38 C3L-02220 CCRCC RNA-Seq tumor CPT0104550006 3fb71aeb-a66e-4b97-a09b-ca87673f4b36.rna_seq.transcriptome.gdc_realn.bam 11097893266 BAM transcriptome harmonized CPTAC3 66609ef9-a3db-4629-b211-a5c6606e6fa9 49a45a4af76217103b7e8952dcf07baf { 'aliquot_tag': 'ALQ_8abdd46b', 'gdc_sample_type': 'Primary Tumor' } C3L-02220.WGS.A C3L-02220 CCRCC WGS tissue_normal CPT0104580006 CPT0104580006.WholeGenome.RP-1303.bam 55760920782 BAM aligned CPTAC3 ec8748b9-900d-457b-83e7-c770de641352 318ddff9fd1f039c9a33a0b0e648e4c7 { 'aliquot_tag': 'ALQ_722d10da', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02220.WGS.A.hg38 C3L-02220 CCRCC WGS tissue_normal CPT0104580006 71c5938f-6621-4252-9c6a-801c3dab59ac_wgs_gdc_realn.bam 81111833299 BAM harmonized CPTAC3 5efdda70-d11d-47ae-a064-4a1ec1ee8375 37c4bab192c04a4f4e6af7b92f4a214c { 'aliquot_tag': 'ALQ_722d10da', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02220.WGS.N C3L-02220 CCRCC WGS blood_normal CPT0105170002 CPT0105170002.WholeGenome.RP-1303.bam 62143636160 BAM aligned CPTAC3 d7d9af3c-d7e6-48d9-9afc-61a4efa24d97 c2e0ad9c96c9bade3a7c2568fddf7f18 { 'aliquot_tag': 'ALQ_caf60ab0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9878,12 +10590,12 @@ C3L-02345.miRNA-Seq.T C3L-02345 LUAD miRNA-Seq tumor CPT0113990006 181113_UNC31- C3L-02345.miRNA-Seq.T.hg38 C3L-02345 LUAD miRNA-Seq tumor CPT0113990006 3b62abff-f151-4c11-8341-53d075051a91_mirnaseq_gdc_realn.bam 248342070 BAM harmonized CPTAC3 beb8999d-e551-4688-b0fd-37cc3ee2c956 920b76bda9d37d25df805bb506035121 { 'aliquot_tag': 'ALQ_3182c701', 'gdc_sample_type': 'Primary Tumor' } C3L-02345.RNA-Seq.chimeric.A.hg38 C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 14c3db18-e5ea-408f-8975-5c525a457c59.rna_seq.chimeric.gdc_realn.bam 119309372 BAM chimeric harmonized CPTAC3 295f10b2-ae58-4c1e-8a3f-60bc6718aac5 585fad29daf1c51370300a6f34a6ffc7 { 'aliquot_tag': 'ALQ_e35ae386', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02345.RNA-Seq.chimeric.T.hg38 C3L-02345 LUAD RNA-Seq tumor CPT0113990006 1974124d-94f3-4969-8202-bc8dec732657.rna_seq.chimeric.gdc_realn.bam 135668710 BAM chimeric harmonized CPTAC3 10bd35ac-2a1e-4352-b2e5-3e77a30bfb77 bb6f2e9bfe7056f10f8dca398291ea1a { 'aliquot_tag': 'ALQ_3182c701', 'gdc_sample_type': 'Primary Tumor' } -C3L-02345.RNA-Seq.genomic.A.hg38 C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 14c3db18-e5ea-408f-8975-5c525a457c59.rna_seq.genomic.gdc_realn.bam 7702618161 BAM genomic harmonized CPTAC3 29fc2708-55c7-46d2-9955-10271ee051f0 812df53a81fe331a58c4821a3ad18dad { 'aliquot_tag': 'ALQ_e35ae386', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02345.RNA-Seq.genomic.T.hg38 C3L-02345 LUAD RNA-Seq tumor CPT0113990006 1974124d-94f3-4969-8202-bc8dec732657.rna_seq.genomic.gdc_realn.bam 8106143150 BAM genomic harmonized CPTAC3 ccbd8efe-74e9-4cf0-936c-8370586121be e0f08afc05c4a1e60cbc5c1a6868f05e { 'aliquot_tag': 'ALQ_3182c701', 'gdc_sample_type': 'Primary Tumor' } -C3L-02345.RNA-Seq.R1_L001.A C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L001_R1_001.fastq.gz 3581676275 FASTQ R1_L001 unaligned CPTAC3 72afe5df-b108-4ec1-abf7-bc8e471dbce4 295305975f492b73c8c31797250b8249 { 'aliquot_tag': 'ALQ_e35ae386', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02345.RNA-Seq.R1_L003.T C3L-02345 LUAD RNA-Seq tumor CPT0113990006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATCACG_S8_L003_R1_001.fastq.gz 3619231221 FASTQ R1_L003 unaligned CPTAC3 49cbf08a-6e13-47bf-a3b3-775ef3c32be9 9bca6b528a6f3065b3f9c47b7ec7dfc4 { 'aliquot_tag': 'ALQ_3182c701', 'gdc_sample_type': 'Primary Tumor' } -C3L-02345.RNA-Seq.R2_L001.A C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L001_R2_001.fastq.gz 4028831044 FASTQ R2_L001 unaligned CPTAC3 6df3b6f1-b54b-4aee-94d5-996948338a45 c62af4b6423c1c65c1159f2e8af38eaf { 'aliquot_tag': 'ALQ_e35ae386', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02345.RNA-Seq.R2_L003.T C3L-02345 LUAD RNA-Seq tumor CPT0113990006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATCACG_S8_L003_R2_001.fastq.gz 3665965485 FASTQ R2_L003 unaligned CPTAC3 b40810ac-c2d7-4c0d-b35d-f8f3d778d334 134be0dbaed39fff836abb4292c3ddef { 'aliquot_tag': 'ALQ_3182c701', 'gdc_sample_type': 'Primary Tumor' } +C3L-02345.RNA-Seq.genomic.A.hg38 C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 14c3db18-e5ea-408f-8975-5c525a457c59.rna_seq.genomic.gdc_realn.bam 7702618161 BAM genomic harmonized CPTAC3 61a913d0-b4e3-440b-90d7-45586fc02d12 812df53a81fe331a58c4821a3ad18dad { 'aliquot_tag': 'ALQ_e35ae386', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02345.RNA-Seq.genomic.T.hg38 C3L-02345 LUAD RNA-Seq tumor CPT0113990006 1974124d-94f3-4969-8202-bc8dec732657.rna_seq.genomic.gdc_realn.bam 8106143150 BAM genomic harmonized CPTAC3 3e4af998-5fa3-43f9-a24b-025b3a08fb63 e0f08afc05c4a1e60cbc5c1a6868f05e { 'aliquot_tag': 'ALQ_3182c701', 'gdc_sample_type': 'Primary Tumor' } +C3L-02345.RNA-Seq.R1_L001.A C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L001_R1_001.fastq.gz 3581676275 FASTQ R1_L001 unaligned CPTAC3 72afe5df-b108-4ec1-abf7-bc8e471dbce4 295305975f492b73c8c31797250b8249 { 'aliquot_tag': 'ALQ_e35ae386', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-02345.RNA-Seq.R1_L003.T C3L-02345 LUAD RNA-Seq tumor CPT0113990006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATCACG_S8_L003_R1_001.fastq.gz 3619231221 FASTQ R1_L003 unaligned CPTAC3 49cbf08a-6e13-47bf-a3b3-775ef3c32be9 9bca6b528a6f3065b3f9c47b7ec7dfc4 { 'aliquot_tag': 'ALQ_3182c701', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02345.RNA-Seq.R2_L001.A C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L001_R2_001.fastq.gz 4028831044 FASTQ R2_L001 unaligned CPTAC3 6df3b6f1-b54b-4aee-94d5-996948338a45 c62af4b6423c1c65c1159f2e8af38eaf { 'aliquot_tag': 'ALQ_e35ae386', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-02345.RNA-Seq.R2_L003.T C3L-02345 LUAD RNA-Seq tumor CPT0113990006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATCACG_S8_L003_R2_001.fastq.gz 3665965485 FASTQ R2_L003 unaligned CPTAC3 b40810ac-c2d7-4c0d-b35d-f8f3d778d334 134be0dbaed39fff836abb4292c3ddef { 'aliquot_tag': 'ALQ_3182c701', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-02345.RNA-Seq.transcriptome.A.hg38 C3L-02345 LUAD RNA-Seq tissue_normal CPT0114010006 14c3db18-e5ea-408f-8975-5c525a457c59.rna_seq.transcriptome.gdc_realn.bam 8905669244 BAM transcriptome harmonized CPTAC3 fa992c18-e377-4ff3-9af6-a540b0c2c11c 1b5b65f30fa05cb235650560e057d1cd { 'aliquot_tag': 'ALQ_e35ae386', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02345.RNA-Seq.transcriptome.T.hg38 C3L-02345 LUAD RNA-Seq tumor CPT0113990006 1974124d-94f3-4969-8202-bc8dec732657.rna_seq.transcriptome.gdc_realn.bam 9305233421 BAM transcriptome harmonized CPTAC3 36c6c4c4-9fbc-45d1-88d7-77ef29fbc394 3e95ccb0001265c7a6f18a75aecbea2b { 'aliquot_tag': 'ALQ_3182c701', 'gdc_sample_type': 'Primary Tumor' } C3L-02345.WGS.A C3L-02345 LUAD WGS tissue_normal CPT0114010009 CPT0114010009.WholeGenome.RP-1303.bam 58094166787 BAM aligned CPTAC3 5e2afbdd-0ad1-48cb-afb3-75758ae06817 7be94ff4029ec8e50c5ee1ddd9165f66 { 'aliquot_tag': 'ALQ_73e5fe17', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -9906,16 +10618,16 @@ C3L-02346.miRNA-Seq.A C3L-02346 CCRCC miRNA-Seq tissue_normal CPT0112490009 1901 C3L-02346.miRNA-Seq.A.hg38 C3L-02346 CCRCC miRNA-Seq tissue_normal CPT0112490009 167d20d1-995b-45d0-83e0-c5377d9808a3_mirnaseq_gdc_realn.bam 198103894 BAM harmonized CPTAC3 c19f33cd-7ca9-4d05-bc25-f564a2bb1741 b99998b651c7a2413fb81a631078a73d { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02346.miRNA-Seq.T C3L-02346 CCRCC miRNA-Seq tumor CPT0112460006 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTGAT_S25_L003_R1_001.unaln.bam 203845797 BAM unaligned CPTAC3 7f936d30-83b0-48ab-811f-0780cc0ca49b 07ae4f0cecdad765b000a339fe45391b { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor' } C3L-02346.miRNA-Seq.T.hg38 C3L-02346 CCRCC miRNA-Seq tumor CPT0112460006 d16758da-9b87-4f83-8eec-a29e7de059ae_mirnaseq_gdc_realn.bam 221614035 BAM harmonized CPTAC3 b2ce5c8e-5f62-4be0-b869-d88466f411ac 8ec98518bc6ea01817076b3b7dc92671 { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02346.RNA-Seq.chimeric.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 c143eb32-1d05-430c-915b-856e7b6f4410.rna_seq.chimeric.gdc_realn.bam 410803163 BAM chimeric harmonized CPTAC3 8e9d5681-77d7-435e-817f-3c8824aa7dd4 f53d2715432e819c0cc564c86eeb8f34 { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02346.RNA-Seq.chimeric.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 b8e84123-70d4-4188-ad5c-ffb7dd895f2f.rna_seq.chimeric.gdc_realn.bam 32416474 BAM chimeric harmonized CPTAC3 d9c79f8a-489c-4eb6-ab2a-215e825529ff 63a6611f30207265f464b93ba8818033 { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02346.RNA-Seq.genomic.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 c143eb32-1d05-430c-915b-856e7b6f4410.rna_seq.genomic.gdc_realn.bam 8977056766 BAM genomic harmonized CPTAC3 d8a664ba-3ff0-455e-ace2-ba8b480d387f 74db9d2dea45713855b994272ea8982b { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02346.RNA-Seq.genomic.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 b8e84123-70d4-4188-ad5c-ffb7dd895f2f.rna_seq.genomic.gdc_realn.bam 9289211388 BAM genomic harmonized CPTAC3 fdc37f0d-52e6-46df-8d77-a3225a324eef d63d04b1fdc97598cce8d191406caf80 { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02346.RNA-Seq.R1_L003.A C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 190117_UNC31-K00269_0180_AH35VKBBXY_TTAGGC_S10_L003_R1_001.fastq.gz 3928510648 FASTQ R1_L003 unaligned CPTAC3 d9df4270-b0b4-40bc-932e-8c9a3dcbbc41 497495e561b791df02265a3aebc2a4d6 { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02346.RNA-Seq.R1_L004.T C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATCACG_S15_L004_R1_001.fastq.gz 4393155105 FASTQ R1_L004 unaligned CPTAC3 a64f3486-3e96-471d-a7f0-0ae1de264ffa d41735b398bd8cc59e7cd562e1057b70 { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02346.RNA-Seq.R2_L003.A C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 190117_UNC31-K00269_0180_AH35VKBBXY_TTAGGC_S10_L003_R2_001.fastq.gz 4283208093 FASTQ R2_L003 unaligned CPTAC3 c6591498-9a3b-4295-a68c-59caa668a1c0 92148154984a810b45dd8fd74ee1cdf2 { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02346.RNA-Seq.R2_L004.T C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATCACG_S15_L004_R2_001.fastq.gz 4274841978 FASTQ R2_L004 unaligned CPTAC3 efcd8633-213d-463c-a2d0-c4e7a360471e 7b401cb5cebef8b02b8b069363d5466e { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02346.RNA-Seq.transcriptome.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 c143eb32-1d05-430c-915b-856e7b6f4410.rna_seq.transcriptome.gdc_realn.bam 7657052024 BAM transcriptome harmonized CPTAC3 c14955ad-eef6-4eae-ae26-86a43bb591fa 16e038d1477d50942e7e78ee65d0f56c { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02346.RNA-Seq.transcriptome.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 b8e84123-70d4-4188-ad5c-ffb7dd895f2f.rna_seq.transcriptome.gdc_realn.bam 10506915066 BAM transcriptome harmonized CPTAC3 8d1df2a7-e238-4be3-a766-c9449db0cdcc 6a0713b4019b99b02ed9924f73f77b1a { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-02346.RNA-Seq.chimeric.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 397b7915-7df8-458f-9c7c-f5f5a05b4eff.rna_seq.chimeric.gdc_realn.bam 410765802 BAM chimeric harmonized CPTAC3 1150f70a-c003-4caf-9c4e-ef42211a97e0 32a073897a07cb9a3be3dbdfd91116fe { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02346.RNA-Seq.chimeric.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 385fc666-f68c-4f98-9828-c43e51043960.rna_seq.chimeric.gdc_realn.bam 32401491 BAM chimeric harmonized CPTAC3 87078763-9199-4a4f-bb4f-92fcaa852666 06b154e97b8a4a18ba661851883d0c8e { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-02346.RNA-Seq.genomic.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 397b7915-7df8-458f-9c7c-f5f5a05b4eff.rna_seq.genomic.gdc_realn.bam 8978287215 BAM genomic harmonized CPTAC3 19b06212-dd4b-46a3-8555-4ac99dcf4a03 77f23bb7b1b35abe3047418e9bba58b1 { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02346.RNA-Seq.genomic.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 385fc666-f68c-4f98-9828-c43e51043960.rna_seq.genomic.gdc_realn.bam 9290841032 BAM genomic harmonized CPTAC3 ccc8b5d8-cc91-4310-9656-227772f5f72d 6686a4eb5fd5881dc608d4fdc398bfd5 { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-02346.RNA-Seq.R1_L003.A C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 190117_UNC31-K00269_0180_AH35VKBBXY_TTAGGC_S10_L003_R1_001.fastq.gz 3928510648 FASTQ R1_L003 unaligned CPTAC3 d9df4270-b0b4-40bc-932e-8c9a3dcbbc41 497495e561b791df02265a3aebc2a4d6 { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-02346.RNA-Seq.R1_L004.T C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATCACG_S15_L004_R1_001.fastq.gz 4393155105 FASTQ R1_L004 unaligned CPTAC3 a64f3486-3e96-471d-a7f0-0ae1de264ffa d41735b398bd8cc59e7cd562e1057b70 { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02346.RNA-Seq.R2_L003.A C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 190117_UNC31-K00269_0180_AH35VKBBXY_TTAGGC_S10_L003_R2_001.fastq.gz 4283208093 FASTQ R2_L003 unaligned CPTAC3 c6591498-9a3b-4295-a68c-59caa668a1c0 92148154984a810b45dd8fd74ee1cdf2 { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-02346.RNA-Seq.R2_L004.T C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATCACG_S15_L004_R2_001.fastq.gz 4274841978 FASTQ R2_L004 unaligned CPTAC3 efcd8633-213d-463c-a2d0-c4e7a360471e 7b401cb5cebef8b02b8b069363d5466e { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02346.RNA-Seq.transcriptome.A.hg38 C3L-02346 CCRCC RNA-Seq tissue_normal CPT0112490009 397b7915-7df8-458f-9c7c-f5f5a05b4eff.rna_seq.transcriptome.gdc_realn.bam 8750372899 BAM transcriptome harmonized CPTAC3 2e7ccb92-2a62-4c9f-a95d-8ed45a64c9e9 8b856b88ddf01c6950bfe4cae59d869b { 'aliquot_tag': 'ALQ_bbd4c2fa', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02346.RNA-Seq.transcriptome.T.hg38 C3L-02346 CCRCC RNA-Seq tumor CPT0112460006 385fc666-f68c-4f98-9828-c43e51043960.rna_seq.transcriptome.gdc_realn.bam 11881189889 BAM transcriptome harmonized CPTAC3 23bcd356-2e59-4201-b297-2b43812577a1 80710fe2e87f3488d570e6c92e3decef { 'aliquot_tag': 'ALQ_a93b48ba', 'gdc_sample_type': 'Primary Tumor' } C3L-02346.WGS.A C3L-02346 CCRCC WGS tissue_normal CPT0112490006 CPT0112490006.WholeGenome.RP-1303.bam 51934510050 BAM aligned CPTAC3 22158af8-54b6-4764-89fe-0000f425e32f b7aa0bdc902bb7a76907e6bf97ed66d2 { 'aliquot_tag': 'ALQ_2b6bdf6b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02346.WGS.A.hg38 C3L-02346 CCRCC WGS tissue_normal CPT0112490006 c5f3604a-5b18-4028-96a6-b61b37b4092d_wgs_gdc_realn.bam 76124597718 BAM harmonized CPTAC3 5008b1cd-a3c1-481c-831b-c16e758a8e53 dda60ec7b7c08c032f1710f6505ce70c { 'aliquot_tag': 'ALQ_2b6bdf6b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02346.WGS.N C3L-02346 CCRCC WGS blood_normal CPT0115150002 CPT0115150002.WholeGenome.RP-1303.bam 64649297306 BAM aligned CPTAC3 9d262091-a8a8-4afe-9d06-30c41ac8cb69 0f4bb92f9129ce6f53469541622141e6 { 'aliquot_tag': 'ALQ_7c9c594e', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9934,18 +10646,21 @@ C3L-02347.miRNA-Seq.A C3L-02347 UCEC miRNA-Seq tissue_normal CPT0113860009 19013 C3L-02347.miRNA-Seq.A.hg38 C3L-02347 UCEC miRNA-Seq tissue_normal CPT0113860009 5a07ec02-6cca-4c9a-b845-cc16fb51938f_mirnaseq_gdc_realn.bam 295177719 BAM harmonized CPTAC3 bbff4d11-aac0-49a6-9b10-6b9c26f05920 cc182aeb84ceac56adf4a0a05832e766 { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02347.miRNA-Seq.T C3L-02347 UCEC miRNA-Seq tumor CPT0113850006 190108_UNC31-K00269_0176_AHYGLVBBXX_CACGAT_S31_L003_R1_001.unaln.bam 223438103 BAM unaligned CPTAC3 3d0b4474-f423-4867-993e-f93961e61447 1efcdd8c151868b0dad2a678c73dcdb2 { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor' } C3L-02347.miRNA-Seq.T.hg38 C3L-02347 UCEC miRNA-Seq tumor CPT0113850006 30d22cc0-122f-4fb5-8826-9fe825580dd0_mirnaseq_gdc_realn.bam 246998067 BAM harmonized CPTAC3 721f2013-25cc-4c51-8435-33d4127c1c71 8d0d3cbbfa47a26209015d60333254ef { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02347.RNA-Seq.chimeric.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 93be3998-7d61-4f56-b48a-953955d8a8a2.rna_seq.chimeric.gdc_realn.bam 71959592 BAM chimeric harmonized CPTAC3 01949ea7-39da-4452-aea6-db7c298bb46c b7fedb3aa865a57cc2249ef93b89ab8d { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02347.RNA-Seq.chimeric.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 f088173d-cd7a-4bff-ad20-dfbb108e2781.rna_seq.chimeric.gdc_realn.bam 32393938 BAM chimeric harmonized CPTAC3 432fb9ba-6c7d-41fd-a1a0-3bee9353022e 031e164a8162887a0cc5eb5bb2623cbe { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02347.RNA-Seq.genomic.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 93be3998-7d61-4f56-b48a-953955d8a8a2.rna_seq.genomic.gdc_realn.bam 9773974252 BAM genomic harmonized CPTAC3 603b5f0c-4671-4901-a3cd-2e4f166684f4 8b043d1d3b683d392113d91bdd44aa33 { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02347.RNA-Seq.genomic.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 f088173d-cd7a-4bff-ad20-dfbb108e2781.rna_seq.genomic.gdc_realn.bam 10323863549 BAM genomic harmonized CPTAC3 53cbc7e8-9b12-465f-b505-07054d66547f b198f3bb150f16767a747b74ffac9853 { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02347.RNA-Seq.R1_L003.T C3L-02347 UCEC RNA-Seq tumor CPT0113850006 181207_UNC32-K00270_0137_BH2LYCBBXY_CAGATC_S10_L003_R1_001.fastq.gz 4608723693 FASTQ R1_L003 unaligned CPTAC3 5dfdde84-1e23-4280-8b55-4132629b16b7 d2d305ad1da0297a08e9c2e9216c174a { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02347.RNA-Seq.R1_L007.A C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 190125_UNC31-K00269_0184_AH3M32BBXY_TAGCTT_S19_L007_R1_001.fastq.gz 4429373823 FASTQ R1_L007 unaligned CPTAC3 abbd8419-e029-4f17-b719-452c26a4bee5 4074b60669f0ebbf954cae28406b1fee { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02347.RNA-Seq.R1_.T C3L-02347 UCEC RNA-Seq tumor CPT0350110001 20210729_P3_F10_WB7988-Plate3_S70_R1_001.fastq.gz 3547212170 FASTQ R1_ unaligned CPTAC3 853dc09c-ac82-4d67-8af0-0b795b8f7850 ac9eeb5889e3e1f131d3449b33cff4f7 { 'aliquot_tag': 'ALQ_e891a7ef', 'gdc_sample_type': 'Primary Tumor' } -C3L-02347.RNA-Seq.R2_L003.T C3L-02347 UCEC RNA-Seq tumor CPT0113850006 181207_UNC32-K00270_0137_BH2LYCBBXY_CAGATC_S10_L003_R2_001.fastq.gz 5000703190 FASTQ R2_L003 unaligned CPTAC3 dc6c11b1-6e28-44d2-aac1-10d5062b327c 7100cc36cae4670a8033d3cb6fa93356 { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02347.RNA-Seq.R2_L007.A C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 190125_UNC31-K00269_0184_AH3M32BBXY_TAGCTT_S19_L007_R2_001.fastq.gz 4701576640 FASTQ R2_L007 unaligned CPTAC3 89251cd0-b752-4190-ab82-45a6e1d10bae 6d1b5daabb90f4b179450543ad8fd59b { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02347.RNA-Seq.R2_.T C3L-02347 UCEC RNA-Seq tumor CPT0350110001 20210729_P3_F10_WB7988-Plate3_S70_R2_001.fastq.gz 3664246903 FASTQ R2_ unaligned CPTAC3 ec783cff-cde6-456d-b52b-5b4057b8f6ed 7679f894032394ae749ba6c211d6f1fe { 'aliquot_tag': 'ALQ_e891a7ef', 'gdc_sample_type': 'Primary Tumor' } -C3L-02347.RNA-Seq.transcriptome.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 93be3998-7d61-4f56-b48a-953955d8a8a2.rna_seq.transcriptome.gdc_realn.bam 8791140347 BAM transcriptome harmonized CPTAC3 92f057c4-dbe5-47e1-9705-3d8f59a43ea6 5e39995b2839235da53ed7c6ab35ede0 { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02347.RNA-Seq.transcriptome.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 f088173d-cd7a-4bff-ad20-dfbb108e2781.rna_seq.transcriptome.gdc_realn.bam 10610946949 BAM transcriptome harmonized CPTAC3 28104618-80cc-42ab-89ae-7207818f4311 2ab3a1ece10697a160f23b387b23d381 { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02347.RNA-Seq.chimeric.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 16fb6af8-7daf-42e9-aaff-fd4a8206a38f.rna_seq.chimeric.gdc_realn.bam 71914814 BAM chimeric harmonized CPTAC3 246aa25e-3bc4-48f6-9394-7155644688bf 163fb099402df26c3c2dd29d980d4971 { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02347.RNA-Seq.chimeric.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 5e36e680-6382-4937-94e2-2a6abf9de0ea.rna_seq.chimeric.gdc_realn.bam 32394585 BAM chimeric harmonized CPTAC3 20578204-e181-4385-a703-fc6035d2091c b5c8be89591b20753e606536ae32916b { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02347.RNA-Seq.chimeric.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0350110001 dbe85dd4-6c4f-4ae4-b538-6a02acb6bd20.rna_seq.chimeric.gdc_realn.bam 64283576 BAM chimeric harmonized CPTAC3 bf70882a-062e-4d9c-a635-089e24c3beeb ee4bacb829323fbc39555d9fd1bd3985 { 'aliquot_tag': 'ALQ_e891a7ef', 'gdc_sample_type': 'Primary Tumor' } +C3L-02347.RNA-Seq.genomic.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 16fb6af8-7daf-42e9-aaff-fd4a8206a38f.rna_seq.genomic.gdc_realn.bam 9774574115 BAM genomic harmonized CPTAC3 8a3f16ff-19cb-4a98-ac78-19127c95348d 21e13533edf6fb9b454e0e198cf1bd2b { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02347.RNA-Seq.genomic.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 5e36e680-6382-4937-94e2-2a6abf9de0ea.rna_seq.genomic.gdc_realn.bam 10325701776 BAM genomic harmonized CPTAC3 3c93869c-4350-4991-a752-ee0ac3801026 249183d4c6ae4ffb66d7d04edd833d59 { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02347.RNA-Seq.genomic.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0350110001 dbe85dd4-6c4f-4ae4-b538-6a02acb6bd20.rna_seq.genomic.gdc_realn.bam 5922096398 BAM genomic harmonized CPTAC3 4b899a12-ef34-4ee7-8164-ebc37fc59d3a b95911cf0bc2f7803308d202da02e2f2 { 'aliquot_tag': 'ALQ_e891a7ef', 'gdc_sample_type': 'Primary Tumor' } +C3L-02347.RNA-Seq.R1_L003.T C3L-02347 UCEC RNA-Seq tumor CPT0113850006 181207_UNC32-K00270_0137_BH2LYCBBXY_CAGATC_S10_L003_R1_001.fastq.gz 4608723693 FASTQ R1_L003 unaligned CPTAC3 5dfdde84-1e23-4280-8b55-4132629b16b7 d2d305ad1da0297a08e9c2e9216c174a { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02347.RNA-Seq.R1_L007.A C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 190125_UNC31-K00269_0184_AH3M32BBXY_TAGCTT_S19_L007_R1_001.fastq.gz 4429373823 FASTQ R1_L007 unaligned CPTAC3 abbd8419-e029-4f17-b719-452c26a4bee5 4074b60669f0ebbf954cae28406b1fee { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-02347.RNA-Seq.R2_L003.T C3L-02347 UCEC RNA-Seq tumor CPT0113850006 181207_UNC32-K00270_0137_BH2LYCBBXY_CAGATC_S10_L003_R2_001.fastq.gz 5000703190 FASTQ R2_L003 unaligned CPTAC3 dc6c11b1-6e28-44d2-aac1-10d5062b327c 7100cc36cae4670a8033d3cb6fa93356 { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02347.RNA-Seq.R2_L007.A C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 190125_UNC31-K00269_0184_AH3M32BBXY_TAGCTT_S19_L007_R2_001.fastq.gz 4701576640 FASTQ R2_L007 unaligned CPTAC3 89251cd0-b752-4190-ab82-45a6e1d10bae 6d1b5daabb90f4b179450543ad8fd59b { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-02347.RNA-Seq.T C3L-02347 UCEC RNA-Seq tumor CPT0350110001 20210729_P3_F10_WB7988-Plate3_S70_R1_001.fastq.gz 3547212170 FASTQ unaligned CPTAC3 853dc09c-ac82-4d67-8af0-0b795b8f7850 ac9eeb5889e3e1f131d3449b33cff4f7 +C3L-02347.RNA-Seq.T C3L-02347 UCEC RNA-Seq tumor CPT0350110001 20210729_P3_F10_WB7988-Plate3_S70_R2_001.fastq.gz 3664246903 FASTQ unaligned CPTAC3 ec783cff-cde6-456d-b52b-5b4057b8f6ed 7679f894032394ae749ba6c211d6f1fe +C3L-02347.RNA-Seq.transcriptome.A.hg38 C3L-02347 UCEC RNA-Seq tissue_normal CPT0113860009 16fb6af8-7daf-42e9-aaff-fd4a8206a38f.rna_seq.transcriptome.gdc_realn.bam 10167090773 BAM transcriptome harmonized CPTAC3 e0e5c1ae-1201-4022-bdc9-26ade375e3b7 559a50fc6ef13f3f5dbfe897b8650370 { 'aliquot_tag': 'ALQ_e8319ee4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02347.RNA-Seq.transcriptome.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0113850006 5e36e680-6382-4937-94e2-2a6abf9de0ea.rna_seq.transcriptome.gdc_realn.bam 12055231179 BAM transcriptome harmonized CPTAC3 734cb83c-b5e2-4684-a972-0d43895b344f d9cfc9802f7e5f04ab780d43d9875511 { 'aliquot_tag': 'ALQ_3f2ef9a5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02347.RNA-Seq.transcriptome.T.hg38 C3L-02347 UCEC RNA-Seq tumor CPT0350110001 dbe85dd4-6c4f-4ae4-b538-6a02acb6bd20.rna_seq.transcriptome.gdc_realn.bam 3276911283 BAM transcriptome harmonized CPTAC3 c91453b6-29a6-45c9-b168-d5979b54e01f 7bb07168a6be355ffc17e70fe9801900 { 'aliquot_tag': 'ALQ_e891a7ef', 'gdc_sample_type': 'Primary Tumor' } C3L-02347.WGS.A C3L-02347 UCEC WGS tissue_normal CPT0113860006 CPT0113860006.WholeGenome.RP-1303.bam 53388058103 BAM aligned CPTAC3 7e0e8e0d-a652-4030-8f32-fd248f6ee6cc ed3b34d0a30d702e874afb30c31c6b24 { 'aliquot_tag': 'ALQ_788e8375', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02347.WGS.A.hg38 C3L-02347 UCEC WGS tissue_normal CPT0113860006 abb5244a-d9bd-4220-907c-85ed67bbb1ca_wgs_gdc_realn.bam 78161109946 BAM harmonized CPTAC3 91c88ca7-21dd-4b8d-9056-281dc071246d ae389dbc8b8597a0777f0fca29a18322 { 'aliquot_tag': 'ALQ_788e8375', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02347.WGS.N C3L-02347 UCEC WGS blood_normal CPT0115290002 CPT0115290002.WholeGenome.RP-1303.bam 58808161174 BAM aligned CPTAC3 f26a76c8-1180-4dae-8594-39a650cb3046 8758d6be442a7e33f951b67c2a7b0742 { 'aliquot_tag': 'ALQ_3ff8c6e1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -9968,12 +10683,12 @@ C3L-02348.miRNA-Seq.T C3L-02348 LUAD miRNA-Seq tumor CPT0115070006 181119_UNC31- C3L-02348.miRNA-Seq.T.hg38 C3L-02348 LUAD miRNA-Seq tumor CPT0115070006 4be684db-f3ea-4d64-8386-70899c50e7d9_mirnaseq_gdc_realn.bam 223237923 BAM harmonized CPTAC3 5c3b39f1-e536-4882-8b9a-c93d67574512 8030f5dd459c312e9c508492563faaaf { 'aliquot_tag': 'ALQ_ca6d1d92', 'gdc_sample_type': 'Primary Tumor' } C3L-02348.RNA-Seq.chimeric.A.hg38 C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 561feb2e-d7fd-4bcc-88ca-16d67dfd2d27.rna_seq.chimeric.gdc_realn.bam 102044429 BAM chimeric harmonized CPTAC3 11e8ba14-b01a-4cf1-b6c0-4adb4bc6594f eef9eef976492f3344e05edd92481d01 { 'aliquot_tag': 'ALQ_755da3f3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02348.RNA-Seq.chimeric.T.hg38 C3L-02348 LUAD RNA-Seq tumor CPT0115070006 8e11e2bc-d024-4ec1-bf4e-b2844df53166.rna_seq.chimeric.gdc_realn.bam 166367537 BAM chimeric harmonized CPTAC3 e3355a7b-26ae-4c39-b35b-5a08937b4ec0 00f1938cdbc7868318e016a6b4f10aa7 { 'aliquot_tag': 'ALQ_ca6d1d92', 'gdc_sample_type': 'Primary Tumor' } -C3L-02348.RNA-Seq.genomic.A.hg38 C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 561feb2e-d7fd-4bcc-88ca-16d67dfd2d27.rna_seq.genomic.gdc_realn.bam 8944078812 BAM genomic harmonized CPTAC3 116efeb3-7a31-45e5-b992-66011a9afda4 8cee7b87d571cc87116c73d493eaaa87 { 'aliquot_tag': 'ALQ_755da3f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02348.RNA-Seq.genomic.T.hg38 C3L-02348 LUAD RNA-Seq tumor CPT0115070006 8e11e2bc-d024-4ec1-bf4e-b2844df53166.rna_seq.genomic.gdc_realn.bam 9314992269 BAM genomic harmonized CPTAC3 2414e46e-bb32-4989-a6cf-c61cfce1f008 a4fb382c11f0b39ed3bd9588d3e5d07b { 'aliquot_tag': 'ALQ_ca6d1d92', 'gdc_sample_type': 'Primary Tumor' } -C3L-02348.RNA-Seq.R1_L001.A C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L001_R1_001.fastq.gz 4270003276 FASTQ R1_L001 unaligned CPTAC3 1cdf25ca-920c-4f76-8bcf-6b55a52862cf 4131c0b036ccbe8b01c527335cfb30ff { 'aliquot_tag': 'ALQ_755da3f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02348.RNA-Seq.R1_L003.T C3L-02348 LUAD RNA-Seq tumor CPT0115070006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGATGT_S10_L003_R1_001.fastq.gz 4340031904 FASTQ R1_L003 unaligned CPTAC3 ae598f4f-e0d0-408b-95af-5a66f66806e2 392b98ccf1ab50422c623342a2fdedfd { 'aliquot_tag': 'ALQ_ca6d1d92', 'gdc_sample_type': 'Primary Tumor' } -C3L-02348.RNA-Seq.R2_L001.A C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L001_R2_001.fastq.gz 4696678825 FASTQ R2_L001 unaligned CPTAC3 a8c23156-1897-4834-8e25-5be6c4e53be7 02f4625e2be0f3e27c39298b73109601 { 'aliquot_tag': 'ALQ_755da3f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02348.RNA-Seq.R2_L003.T C3L-02348 LUAD RNA-Seq tumor CPT0115070006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGATGT_S10_L003_R2_001.fastq.gz 4834437655 FASTQ R2_L003 unaligned CPTAC3 1346e234-53d7-44ae-9586-96c827c2f94e 9f1afecdde11d99bfb3ab36a15d5014e { 'aliquot_tag': 'ALQ_ca6d1d92', 'gdc_sample_type': 'Primary Tumor' } +C3L-02348.RNA-Seq.genomic.A.hg38 C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 561feb2e-d7fd-4bcc-88ca-16d67dfd2d27.rna_seq.genomic.gdc_realn.bam 8944078812 BAM genomic harmonized CPTAC3 d81998c8-138b-4a4a-be9b-46ae4ed9c762 8cee7b87d571cc87116c73d493eaaa87 { 'aliquot_tag': 'ALQ_755da3f3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02348.RNA-Seq.genomic.T.hg38 C3L-02348 LUAD RNA-Seq tumor CPT0115070006 8e11e2bc-d024-4ec1-bf4e-b2844df53166.rna_seq.genomic.gdc_realn.bam 9314992269 BAM genomic harmonized CPTAC3 a05c8880-c5cf-4592-a940-f38435df8f8a a4fb382c11f0b39ed3bd9588d3e5d07b { 'aliquot_tag': 'ALQ_ca6d1d92', 'gdc_sample_type': 'Primary Tumor' } +C3L-02348.RNA-Seq.R1_L001.A C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L001_R1_001.fastq.gz 4270003276 FASTQ R1_L001 unaligned CPTAC3 1cdf25ca-920c-4f76-8bcf-6b55a52862cf 4131c0b036ccbe8b01c527335cfb30ff { 'aliquot_tag': 'ALQ_755da3f3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-02348.RNA-Seq.R1_L003.T C3L-02348 LUAD RNA-Seq tumor CPT0115070006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGATGT_S10_L003_R1_001.fastq.gz 4340031904 FASTQ R1_L003 unaligned CPTAC3 ae598f4f-e0d0-408b-95af-5a66f66806e2 392b98ccf1ab50422c623342a2fdedfd { 'aliquot_tag': 'ALQ_ca6d1d92', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02348.RNA-Seq.R2_L001.A C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L001_R2_001.fastq.gz 4696678825 FASTQ R2_L001 unaligned CPTAC3 a8c23156-1897-4834-8e25-5be6c4e53be7 02f4625e2be0f3e27c39298b73109601 { 'aliquot_tag': 'ALQ_755da3f3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-02348.RNA-Seq.R2_L003.T C3L-02348 LUAD RNA-Seq tumor CPT0115070006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGATGT_S10_L003_R2_001.fastq.gz 4834437655 FASTQ R2_L003 unaligned CPTAC3 1346e234-53d7-44ae-9586-96c827c2f94e 9f1afecdde11d99bfb3ab36a15d5014e { 'aliquot_tag': 'ALQ_ca6d1d92', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-02348.RNA-Seq.transcriptome.A.hg38 C3L-02348 LUAD RNA-Seq tissue_normal CPT0115090006 561feb2e-d7fd-4bcc-88ca-16d67dfd2d27.rna_seq.transcriptome.gdc_realn.bam 10945997575 BAM transcriptome harmonized CPTAC3 0277da03-7dd4-44c8-be44-8d1657812625 637b2fc2a402aa9d85d7f02b5055a6fb { 'aliquot_tag': 'ALQ_755da3f3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02348.RNA-Seq.transcriptome.T.hg38 C3L-02348 LUAD RNA-Seq tumor CPT0115070006 8e11e2bc-d024-4ec1-bf4e-b2844df53166.rna_seq.transcriptome.gdc_realn.bam 11325335490 BAM transcriptome harmonized CPTAC3 8bad9ed2-bfb6-44b4-89b7-005a54b0d8e8 04e215130f703ac1845f0d627a946188 { 'aliquot_tag': 'ALQ_ca6d1d92', 'gdc_sample_type': 'Primary Tumor' } C3L-02348.WGS.A C3L-02348 LUAD WGS tissue_normal CPT0115090009 CPT0115090009.WholeGenome.RP-1303.bam 51412118987 BAM aligned CPTAC3 e0b20b6b-7783-4a41-8285-5fa8c3e89af1 68e83b2d40bd7f1130db89b3e415363d { 'aliquot_tag': 'ALQ_e5e2be62', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -9996,12 +10711,12 @@ C3L-02349.miRNA-Seq.T C3L-02349 LSCC miRNA-Seq tumor CPT0112540006 181219_UNC31- C3L-02349.miRNA-Seq.T.hg38 C3L-02349 LSCC miRNA-Seq tumor CPT0112540006 f66e96e0-337f-4a7d-a11b-41f8cf478325_mirnaseq_gdc_realn.bam 218473355 BAM harmonized CPTAC3 f4d6054b-4241-49ec-82bc-3b11dd8f550d 18622945c75b5b784d0650ac13e1f48e { 'aliquot_tag': 'ALQ_18a7c87f', 'gdc_sample_type': 'Primary Tumor' } C3L-02349.RNA-Seq.chimeric.A.hg38 C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 f1cb4842-8fae-4102-be3c-3f575e105a4d.rna_seq.chimeric.gdc_realn.bam 30645150 BAM chimeric harmonized CPTAC3 559ed92c-863d-4aa5-a9c6-4aa1cc5ce2d6 626de4d6fffdc2ca540009b45ff47893 { 'aliquot_tag': 'ALQ_b578fc5e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02349.RNA-Seq.chimeric.T.hg38 C3L-02349 LSCC RNA-Seq tumor CPT0112540006 bc036742-f2af-4b59-b300-14a5d292f2a6.rna_seq.chimeric.gdc_realn.bam 26103970 BAM chimeric harmonized CPTAC3 ded61a49-4fd2-4331-9958-02ebf9efb2f6 34c2ff0a1aa5ae5e0e2af7443c20390d { 'aliquot_tag': 'ALQ_18a7c87f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02349.RNA-Seq.genomic.A.hg38 C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 f1cb4842-8fae-4102-be3c-3f575e105a4d.rna_seq.genomic.gdc_realn.bam 10230801754 BAM genomic harmonized CPTAC3 868097ae-189c-404a-abb8-f7040741aac5 f507195908744d403c073528abaccba0 { 'aliquot_tag': 'ALQ_b578fc5e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02349.RNA-Seq.genomic.T.hg38 C3L-02349 LSCC RNA-Seq tumor CPT0112540006 bc036742-f2af-4b59-b300-14a5d292f2a6.rna_seq.genomic.gdc_realn.bam 7585394000 BAM genomic harmonized CPTAC3 3205d4e0-eced-4175-82cf-c71eed038b69 f5e591b4f181e6bdb295c65f0a8bfe8c { 'aliquot_tag': 'ALQ_18a7c87f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02349.RNA-Seq.R1_L005.A C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 180926_UNC31-K00269_0155_AHWN7WBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4178774540 FASTQ R1_L005 unaligned CPTAC3 0c46a21c-b247-4986-93d8-1349c2a4033d 564d56c76ee8df5ddafd8499de2ab018 { 'aliquot_tag': 'ALQ_b578fc5e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02349.RNA-Seq.R1_L005.T C3L-02349 LSCC RNA-Seq tumor CPT0112540006 180925_UNC32-K00270_0122_BHWNF7BBXX_TGACCA_S20_L005_R1_001.fastq.gz 3434930401 FASTQ R1_L005 unaligned CPTAC3 3ce560ec-b154-46d6-b204-a398180fb032 1376aa427b5532a04f2ea5894b2f6aac { 'aliquot_tag': 'ALQ_18a7c87f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02349.RNA-Seq.R2_L005.A C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 180926_UNC31-K00269_0155_AHWN7WBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4527033850 FASTQ R2_L005 unaligned CPTAC3 6551256d-3023-414d-8f66-9574a12944d5 61b7af49897c385ddd511254ee34ff17 { 'aliquot_tag': 'ALQ_b578fc5e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02349.RNA-Seq.R2_L005.T C3L-02349 LSCC RNA-Seq tumor CPT0112540006 180925_UNC32-K00270_0122_BHWNF7BBXX_TGACCA_S20_L005_R2_001.fastq.gz 3526817878 FASTQ R2_L005 unaligned CPTAC3 f19fc187-52d3-4b66-978f-e46acbc1f4b8 4f3dd94e16e3c97735a1246e2b366c7d { 'aliquot_tag': 'ALQ_18a7c87f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02349.RNA-Seq.genomic.A.hg38 C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 f1cb4842-8fae-4102-be3c-3f575e105a4d.rna_seq.genomic.gdc_realn.bam 10230801754 BAM genomic harmonized CPTAC3 613b0530-7e84-41b6-9732-624c625c01b8 f507195908744d403c073528abaccba0 { 'aliquot_tag': 'ALQ_b578fc5e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02349.RNA-Seq.genomic.T.hg38 C3L-02349 LSCC RNA-Seq tumor CPT0112540006 bc036742-f2af-4b59-b300-14a5d292f2a6.rna_seq.genomic.gdc_realn.bam 7585394000 BAM genomic harmonized CPTAC3 32938798-2b5e-4211-b34b-d165d6efa458 f5e591b4f181e6bdb295c65f0a8bfe8c { 'aliquot_tag': 'ALQ_18a7c87f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02349.RNA-Seq.R1_L005.A C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 180926_UNC31-K00269_0155_AHWN7WBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4178774540 FASTQ R1_L005 unaligned CPTAC3 0c46a21c-b247-4986-93d8-1349c2a4033d 564d56c76ee8df5ddafd8499de2ab018 { 'aliquot_tag': 'ALQ_b578fc5e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02349.RNA-Seq.R1_L005.T C3L-02349 LSCC RNA-Seq tumor CPT0112540006 180925_UNC32-K00270_0122_BHWNF7BBXX_TGACCA_S20_L005_R1_001.fastq.gz 3434930401 FASTQ R1_L005 unaligned CPTAC3 3ce560ec-b154-46d6-b204-a398180fb032 1376aa427b5532a04f2ea5894b2f6aac { 'aliquot_tag': 'ALQ_18a7c87f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02349.RNA-Seq.R2_L005.A C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 180926_UNC31-K00269_0155_AHWN7WBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4527033850 FASTQ R2_L005 unaligned CPTAC3 6551256d-3023-414d-8f66-9574a12944d5 61b7af49897c385ddd511254ee34ff17 { 'aliquot_tag': 'ALQ_b578fc5e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02349.RNA-Seq.R2_L005.T C3L-02349 LSCC RNA-Seq tumor CPT0112540006 180925_UNC32-K00270_0122_BHWNF7BBXX_TGACCA_S20_L005_R2_001.fastq.gz 3526817878 FASTQ R2_L005 unaligned CPTAC3 f19fc187-52d3-4b66-978f-e46acbc1f4b8 4f3dd94e16e3c97735a1246e2b366c7d { 'aliquot_tag': 'ALQ_18a7c87f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-02349.RNA-Seq.transcriptome.A.hg38 C3L-02349 LSCC RNA-Seq tissue_normal CPT0112550009 f1cb4842-8fae-4102-be3c-3f575e105a4d.rna_seq.transcriptome.gdc_realn.bam 11024482160 BAM transcriptome harmonized CPTAC3 3ffda287-3f72-44dc-a6f1-c2b71c821fe4 e5ed02602df7181cae09de6ef200f956 { 'aliquot_tag': 'ALQ_b578fc5e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02349.RNA-Seq.transcriptome.T.hg38 C3L-02349 LSCC RNA-Seq tumor CPT0112540006 bc036742-f2af-4b59-b300-14a5d292f2a6.rna_seq.transcriptome.gdc_realn.bam 10942556899 BAM transcriptome harmonized CPTAC3 08989de4-6598-426a-881f-df381c91ea00 f1631eacf7d3d392224cff1aaa6a1831 { 'aliquot_tag': 'ALQ_18a7c87f', 'gdc_sample_type': 'Primary Tumor' } C3L-02349.WGS.A C3L-02349 LSCC WGS tissue_normal CPT0112550006 CPT0112550006.WholeGenome.RP-1303.bam 56642330763 BAM aligned CPTAC3 33e50219-83be-44e5-a174-6718f3dfe1f0 47b57cb11dc340fc462794ea17b83641 { 'aliquot_tag': 'ALQ_25c7e1cf', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -10027,11 +10742,11 @@ C3L-02350.miRNA-Seq.T.hg38 C3L-02350 LUAD miRNA-Seq tumor CPT0104750006 e0a28eeb C3L-02350.RNA-Seq.chimeric.A.hg38 C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 efd7b9eb-0e43-473c-8b68-e8f2dba08dda.rna_seq.chimeric.gdc_realn.bam 75228752 BAM chimeric harmonized CPTAC3 d7964fb7-36ac-4a78-b291-410a120c34aa bd6750052ef6f1c88a834544f932e321 { 'aliquot_tag': 'ALQ_80d50fb0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02350.RNA-Seq.chimeric.T.hg38 C3L-02350 LUAD RNA-Seq tumor CPT0104750006 2b519912-61c7-4104-b5d4-7a26beb73fd7.rna_seq.chimeric.gdc_realn.bam 35180451 BAM chimeric harmonized CPTAC3 41da6992-f00f-4f4b-95cb-cec8a36fca98 50578865f9086a389d55696110a014ad { 'aliquot_tag': 'ALQ_c7757560', 'gdc_sample_type': 'Primary Tumor' } C3L-02350.RNA-Seq.genomic.A.hg38 C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 efd7b9eb-0e43-473c-8b68-e8f2dba08dda.rna_seq.genomic.gdc_realn.bam 8405764202 BAM genomic harmonized CPTAC3 f6cde4c4-3e31-4128-83e4-bee6b3152f06 14ec77dfc83bb996b2679f6adec2c4e2 { 'aliquot_tag': 'ALQ_80d50fb0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02350.RNA-Seq.genomic.T.hg38 C3L-02350 LUAD RNA-Seq tumor CPT0104750006 2b519912-61c7-4104-b5d4-7a26beb73fd7.rna_seq.genomic.gdc_realn.bam 9805706221 BAM genomic harmonized CPTAC3 4b4918de-9d15-42d9-8c72-656fd1095ee3 c1b2bd9ed169ba008d38725f222e600b { 'aliquot_tag': 'ALQ_c7757560', 'gdc_sample_type': 'Primary Tumor' } -C3L-02350.RNA-Seq.R1_L004.A C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3967363449 FASTQ R1_L004 unaligned CPTAC3 33fc37f3-73e1-4159-8e52-3be53dd9e2c3 f9972bd96ce5c1e88e296ea34ca13d0a { 'aliquot_tag': 'ALQ_80d50fb0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02350.RNA-Seq.R1_L006.T C3L-02350 LUAD RNA-Seq tumor CPT0104750006 171109_UNC31-K00269_0090_AHLHNWBBXX_CAGATC_S21_L006_R1_001.fastq.gz 4372927334 FASTQ R1_L006 unaligned CPTAC3 82879494-5e4b-463c-bd21-c7f0f17a0f48 5d5d5132d0d201ca4108b46aa1a292e1 { 'aliquot_tag': 'ALQ_c7757560', 'gdc_sample_type': 'Primary Tumor' } -C3L-02350.RNA-Seq.R2_L004.A C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 4451962157 FASTQ R2_L004 unaligned CPTAC3 a09255be-5c21-4ef8-a02d-f2639f19ed6e a264e72ada4a81a218b29c90701f60d4 { 'aliquot_tag': 'ALQ_80d50fb0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02350.RNA-Seq.R2_L006.T C3L-02350 LUAD RNA-Seq tumor CPT0104750006 171109_UNC31-K00269_0090_AHLHNWBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4896138767 FASTQ R2_L006 unaligned CPTAC3 5e35f2ef-3412-40aa-8261-3698acc0db0a 721dcae52e0a2ae635184e3b1d3df239 { 'aliquot_tag': 'ALQ_c7757560', 'gdc_sample_type': 'Primary Tumor' } +C3L-02350.RNA-Seq.genomic.T.hg38 C3L-02350 LUAD RNA-Seq tumor CPT0104750006 2b519912-61c7-4104-b5d4-7a26beb73fd7.rna_seq.genomic.gdc_realn.bam 9805706221 BAM genomic harmonized CPTAC3 e78d6f47-63eb-44c1-9d32-2d776d36d300 c1b2bd9ed169ba008d38725f222e600b { 'aliquot_tag': 'ALQ_c7757560', 'gdc_sample_type': 'Primary Tumor' } +C3L-02350.RNA-Seq.R1_L004.A C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTCAA_S16_L004_R1_001.fastq.gz 3967363449 FASTQ R1_L004 unaligned CPTAC3 33fc37f3-73e1-4159-8e52-3be53dd9e2c3 f9972bd96ce5c1e88e296ea34ca13d0a { 'aliquot_tag': 'ALQ_80d50fb0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02350.RNA-Seq.R1_L006.T C3L-02350 LUAD RNA-Seq tumor CPT0104750006 171109_UNC31-K00269_0090_AHLHNWBBXX_CAGATC_S21_L006_R1_001.fastq.gz 4372927334 FASTQ R1_L006 unaligned CPTAC3 82879494-5e4b-463c-bd21-c7f0f17a0f48 5d5d5132d0d201ca4108b46aa1a292e1 { 'aliquot_tag': 'ALQ_c7757560', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02350.RNA-Seq.R2_L004.A C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTCAA_S16_L004_R2_001.fastq.gz 4451962157 FASTQ R2_L004 unaligned CPTAC3 a09255be-5c21-4ef8-a02d-f2639f19ed6e a264e72ada4a81a218b29c90701f60d4 { 'aliquot_tag': 'ALQ_80d50fb0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-02350.RNA-Seq.R2_L006.T C3L-02350 LUAD RNA-Seq tumor CPT0104750006 171109_UNC31-K00269_0090_AHLHNWBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4896138767 FASTQ R2_L006 unaligned CPTAC3 5e35f2ef-3412-40aa-8261-3698acc0db0a 721dcae52e0a2ae635184e3b1d3df239 { 'aliquot_tag': 'ALQ_c7757560', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02350.RNA-Seq.transcriptome.A.hg38 C3L-02350 LUAD RNA-Seq tissue_normal CPT0104760006 efd7b9eb-0e43-473c-8b68-e8f2dba08dda.rna_seq.transcriptome.gdc_realn.bam 9982352731 BAM transcriptome harmonized CPTAC3 34bf31eb-180f-4553-be7a-c387ac35e35b 9652dd74df20db18acb8769ff2eba19c { 'aliquot_tag': 'ALQ_80d50fb0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02350.RNA-Seq.transcriptome.T.hg38 C3L-02350 LUAD RNA-Seq tumor CPT0104750006 2b519912-61c7-4104-b5d4-7a26beb73fd7.rna_seq.transcriptome.gdc_realn.bam 13125116655 BAM transcriptome harmonized CPTAC3 f478cea5-99ba-4f07-b283-ae6751472002 71672b9b6018a8f77d9e21453336ea05 { 'aliquot_tag': 'ALQ_c7757560', 'gdc_sample_type': 'Primary Tumor' } C3L-02350.WGS.A C3L-02350 LUAD WGS tissue_normal CPT0104760009 CPT0104760009.WholeGenome.RP-1303.bam 53054949512 BAM aligned CPTAC3 39ab75a5-82fc-4cd0-b79f-d8e59763651e f2672ee8f0f443bd785db244866776b3 { 'aliquot_tag': 'ALQ_106a1221', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -10054,16 +10769,16 @@ C3L-02352.miRNA-Seq.A C3L-02352 CCRCC miRNA-Seq tissue_normal CPT0104450009 1811 C3L-02352.miRNA-Seq.A.hg38 C3L-02352 CCRCC miRNA-Seq tissue_normal CPT0104450009 95fc043d-e745-4ce8-925a-b788ae80da54_mirnaseq_gdc_realn.bam 245620658 BAM harmonized CPTAC3 f4bb8e02-c3ed-4af9-bca7-fc493ae25119 4c5d0f2f728c13eca2fa1dec79b6a925 { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02352.miRNA-Seq.T C3L-02352 CCRCC miRNA-Seq tumor CPT0104430006 181113_UNC31-K00269_0164_AH23NNBBXY_TATAAT_S20_L003_R1_001.unaln.bam 239012552 BAM unaligned CPTAC3 c3ad22c1-5dd7-49ea-a837-c065108ce288 029687344950aae898b8b682fca35a81 { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor' } C3L-02352.miRNA-Seq.T.hg38 C3L-02352 CCRCC miRNA-Seq tumor CPT0104430006 b6d1e37b-80aa-471c-88f3-5f6a6adbd68a_mirnaseq_gdc_realn.bam 269762296 BAM harmonized CPTAC3 3cec1c8c-07d2-484c-84ac-05cd3545f332 740294010e1bfa1b463b25714fef6d39 { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02352.RNA-Seq.chimeric.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 1de08392-ca56-4940-a150-68e74f2fec55.rna_seq.chimeric.gdc_realn.bam 25347376 BAM chimeric harmonized CPTAC3 39ac2823-e5f9-4599-9ffe-32a433cdb37a 27ff8bbaff036ffc95bc246ddff36910 { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02352.RNA-Seq.chimeric.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 a06e7333-1ac5-440e-991c-c0a8df50ff40.rna_seq.chimeric.gdc_realn.bam 44352258 BAM chimeric harmonized CPTAC3 311e8c84-d2e2-41f2-b43a-4bee9869dac3 d724d48260dca3d4ae3b4b6eda6092fc { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02352.RNA-Seq.genomic.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 1de08392-ca56-4940-a150-68e74f2fec55.rna_seq.genomic.gdc_realn.bam 8720028999 BAM genomic harmonized CPTAC3 7b4604da-3061-4a5e-b964-8db650ac7f42 36c7f2a025f9fbd7211720e00c8b1d8d { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02352.RNA-Seq.genomic.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 a06e7333-1ac5-440e-991c-c0a8df50ff40.rna_seq.genomic.gdc_realn.bam 9878564141 BAM genomic harmonized CPTAC3 2377a746-3e7e-4383-abca-f2a1f44a999e bc62b6eca1f09e6fda98a10b8cbbec59 { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02352.RNA-Seq.R1_L007.T C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4624350711 FASTQ R1_L007 unaligned CPTAC3 fd5263b8-c893-46c7-bb26-f9631fdfa767 d628a1b892067e936ad9ff830076fc68 { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02352.RNA-Seq.R1_L008.A C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L008_R1_001.fastq.gz 3911764964 FASTQ R1_L008 unaligned CPTAC3 568682f4-733c-4baa-956d-42b89f875b39 5c40721d3e63e97fddf8837fa02d816b { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02352.RNA-Seq.R2_L007.T C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L007_R2_001.fastq.gz 5097195016 FASTQ R2_L007 unaligned CPTAC3 c6b90cf8-197a-4924-870a-10c06fb61a4c fb79bd8d00e8e14fcc7a5315967f20ab { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02352.RNA-Seq.R2_L008.A C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L008_R2_001.fastq.gz 4206651727 FASTQ R2_L008 unaligned CPTAC3 7f2fbd91-4b5b-4f73-9959-c30c95b24651 947f26920a34b423e6c33b6e5bde8ec4 { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02352.RNA-Seq.transcriptome.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 1de08392-ca56-4940-a150-68e74f2fec55.rna_seq.transcriptome.gdc_realn.bam 9814621390 BAM transcriptome harmonized CPTAC3 9c929140-7a56-4df3-ae28-1b9965e8c96e 84ece24f7767e432657a6e7f9894afc9 { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02352.RNA-Seq.transcriptome.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 a06e7333-1ac5-440e-991c-c0a8df50ff40.rna_seq.transcriptome.gdc_realn.bam 11216965206 BAM transcriptome harmonized CPTAC3 a4cab8bf-09af-4572-8398-c73bafaf955b 7d747f4f7d73b2ce2bd45a2ede48c533 { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02352.RNA-Seq.chimeric.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 0416fcc6-1a3e-4e93-b30b-ca7f77481d08.rna_seq.chimeric.gdc_realn.bam 25334653 BAM chimeric harmonized CPTAC3 14141950-d5c5-41dc-945f-ae6ad56d1406 5c555893bdca9cc4dc156de449292695 { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02352.RNA-Seq.chimeric.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 58f83d1a-0c0c-45e1-ab80-a34d34efb670.rna_seq.chimeric.gdc_realn.bam 44334225 BAM chimeric harmonized CPTAC3 dd06f542-88ad-496f-b979-c4a49fb5f0e0 3fea574b3b6e4475be1c23752c5090b2 { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02352.RNA-Seq.genomic.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 0416fcc6-1a3e-4e93-b30b-ca7f77481d08.rna_seq.genomic.gdc_realn.bam 8720770380 BAM genomic harmonized CPTAC3 9dda95e4-d0e4-4f4d-851d-abc459d8f8bc 0b6f341e9aa958e72282c5825b24fc78 { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02352.RNA-Seq.genomic.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 58f83d1a-0c0c-45e1-ab80-a34d34efb670.rna_seq.genomic.gdc_realn.bam 9879912473 BAM genomic harmonized CPTAC3 b14c3e46-f00f-416a-ad95-80ece7feafed 3734da3656765182c96a3623edd2b136 { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02352.RNA-Seq.R1_L007.T C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4624350711 FASTQ R1_L007 unaligned CPTAC3 fd5263b8-c893-46c7-bb26-f9631fdfa767 d628a1b892067e936ad9ff830076fc68 { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02352.RNA-Seq.R1_L008.A C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L008_R1_001.fastq.gz 3911764964 FASTQ R1_L008 unaligned CPTAC3 568682f4-733c-4baa-956d-42b89f875b39 5c40721d3e63e97fddf8837fa02d816b { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02352.RNA-Seq.R2_L007.T C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L007_R2_001.fastq.gz 5097195016 FASTQ R2_L007 unaligned CPTAC3 c6b90cf8-197a-4924-870a-10c06fb61a4c fb79bd8d00e8e14fcc7a5315967f20ab { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02352.RNA-Seq.R2_L008.A C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L008_R2_001.fastq.gz 4206651727 FASTQ R2_L008 unaligned CPTAC3 7f2fbd91-4b5b-4f73-9959-c30c95b24651 947f26920a34b423e6c33b6e5bde8ec4 { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02352.RNA-Seq.transcriptome.A.hg38 C3L-02352 CCRCC RNA-Seq tissue_normal CPT0104450009 0416fcc6-1a3e-4e93-b30b-ca7f77481d08.rna_seq.transcriptome.gdc_realn.bam 11178189579 BAM transcriptome harmonized CPTAC3 e4b00867-3ca0-4e30-84e7-ceb3d41c0d10 ad8e836e7dc2171fcd43dfead04df586 { 'aliquot_tag': 'ALQ_d15e1a5f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02352.RNA-Seq.transcriptome.T.hg38 C3L-02352 CCRCC RNA-Seq tumor CPT0104430006 58f83d1a-0c0c-45e1-ab80-a34d34efb670.rna_seq.transcriptome.gdc_realn.bam 12725811872 BAM transcriptome harmonized CPTAC3 0e898059-418f-4c86-9ef2-763612a29b29 b6e7d7276139fa315275f351d98f537f { 'aliquot_tag': 'ALQ_cea1f26e', 'gdc_sample_type': 'Primary Tumor' } C3L-02352.WGS.A C3L-02352 CCRCC WGS tissue_normal CPT0104450006 CPT0104450006.WholeGenome.RP-1303.bam 55008001766 BAM aligned CPTAC3 b9201e6b-950c-4423-9d4f-bad36c48394b 37488ee750a8b79af4a00cc979a1f8e7 { 'aliquot_tag': 'ALQ_41e107ce', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02352.WGS.A.hg38 C3L-02352 CCRCC WGS tissue_normal CPT0104450006 50d2ab08-0ec8-4774-9abb-b4c4964fdefb_wgs_gdc_realn.bam 81129354528 BAM harmonized CPTAC3 ec886303-63b6-49b2-99d1-d651eb696439 dff02ab66a5e32729dc6b5611d32f3c5 { 'aliquot_tag': 'ALQ_41e107ce', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02352.WGS.N C3L-02352 CCRCC WGS blood_normal CPT0105130002 CPT0105130002.WholeGenome.RP-1303.bam 65072264653 BAM aligned CPTAC3 3a119064-3def-4c81-9a53-7ae2fb8e3aad 953835fae5220d29ed3f9e34a0bcd507 { 'aliquot_tag': 'ALQ_3f76ac70', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10082,16 +10797,16 @@ C3L-02353.miRNA-Seq.A C3L-02353 UCEC miRNA-Seq tissue_normal CPT0112790006 19013 C3L-02353.miRNA-Seq.A.hg38 C3L-02353 UCEC miRNA-Seq tissue_normal CPT0112790006 a81c2a9d-7d8d-47bd-a113-3e5adfd624be_mirnaseq_gdc_realn.bam 367693085 BAM harmonized CPTAC3 6668e34e-b55d-4ab1-b573-4d6a38f6ca84 ff3dba4307dac71530d025438e02622c { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02353.miRNA-Seq.T C3L-02353 UCEC miRNA-Seq tumor CPT0112780006 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGAGC_S26_L003_R1_001.unaln.bam 205743821 BAM unaligned CPTAC3 e1ded5b3-ee90-43e7-b108-2122fbbfbccc f7bdeecc926cfcc90b82616bcb6614ff { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor' } C3L-02353.miRNA-Seq.T.hg38 C3L-02353 UCEC miRNA-Seq tumor CPT0112780006 e5bdfbae-b819-4cb0-b5ed-c2367eeff418_mirnaseq_gdc_realn.bam 224245670 BAM harmonized CPTAC3 ab4caeb7-ddbd-468b-a8d6-058c71120a4b 86895d9feccc35e40dea0c6898381041 { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor' } -C3L-02353.RNA-Seq.chimeric.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 9e5161d3-6d87-48db-8d71-23f85084a579.rna_seq.chimeric.gdc_realn.bam 83108986 BAM chimeric harmonized CPTAC3 5ee90f06-8789-46d1-8086-31ad97deb8c0 74422c8330fe58cc44765fca72ba3b4f { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02353.RNA-Seq.chimeric.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 35708dde-eb5c-4ebf-8de4-298de3d1f2fd.rna_seq.chimeric.gdc_realn.bam 36629810 BAM chimeric harmonized CPTAC3 5f00a62f-e2c3-41f4-9f91-41c6fc174976 63d41d5b329783ce014bf39641807bdb { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor' } -C3L-02353.RNA-Seq.genomic.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 9e5161d3-6d87-48db-8d71-23f85084a579.rna_seq.genomic.gdc_realn.bam 9810875186 BAM genomic harmonized CPTAC3 370f5f00-b157-4ee6-b564-a51a4cbf1cc2 b81c9d8125437c497c2dc3fb65d65ad0 { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02353.RNA-Seq.genomic.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 35708dde-eb5c-4ebf-8de4-298de3d1f2fd.rna_seq.genomic.gdc_realn.bam 9985290753 BAM genomic harmonized CPTAC3 5a9f74c5-3634-4d85-8955-080641260ac3 7ca642012a4c143db50e9de0f65fc883 { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor' } -C3L-02353.RNA-Seq.R1_L004.T C3L-02353 UCEC RNA-Seq tumor CPT0112780006 181207_UNC32-K00270_0137_BH2LYCBBXY_CGATGT_S14_L004_R1_001.fastq.gz 4648983028 FASTQ R1_L004 unaligned CPTAC3 fc5ae671-1623-40e6-91fa-46462bfd5231 d79b1f78dde1c0d1116d77b3ae79d208 { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor' } -C3L-02353.RNA-Seq.R1_L006.A C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 190117_UNC31-K00269_0180_AH35VKBBXY_CCGTCC_S16_L006_R1_001.fastq.gz 4058155304 FASTQ R1_L006 unaligned CPTAC3 276387f5-9cac-46d2-83b6-16832362c175 532999a1e55da30c892de7b9b034189f { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02353.RNA-Seq.R2_L004.T C3L-02353 UCEC RNA-Seq tumor CPT0112780006 181207_UNC32-K00270_0137_BH2LYCBBXY_CGATGT_S14_L004_R2_001.fastq.gz 5062165421 FASTQ R2_L004 unaligned CPTAC3 5c918460-2c92-4a1c-9a8f-a7f16bb06db3 5c53901cbddc6eb1f092a273388252ff { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor' } -C3L-02353.RNA-Seq.R2_L006.A C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 190117_UNC31-K00269_0180_AH35VKBBXY_CCGTCC_S16_L006_R2_001.fastq.gz 4203543250 FASTQ R2_L006 unaligned CPTAC3 4e769a79-a59a-4fda-9c5b-a4515601051b 908d7e574f7e3413c4062408ab3bc880 { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02353.RNA-Seq.transcriptome.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 9e5161d3-6d87-48db-8d71-23f85084a579.rna_seq.transcriptome.gdc_realn.bam 7967408696 BAM transcriptome harmonized CPTAC3 e060efc9-ddd3-4464-ac7b-020170e8935c ac83ee7a7421a62469e16b44cea180da { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02353.RNA-Seq.transcriptome.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 35708dde-eb5c-4ebf-8de4-298de3d1f2fd.rna_seq.transcriptome.gdc_realn.bam 11007835885 BAM transcriptome harmonized CPTAC3 d8ac0d65-33e7-4b09-ac41-37ccbf9eff15 cd38b86c49a535086c27c264c8973ecf { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor' } +C3L-02353.RNA-Seq.chimeric.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 5a86b495-566b-4fff-b443-223f1232cf18.rna_seq.chimeric.gdc_realn.bam 83066915 BAM chimeric harmonized CPTAC3 898f7587-f217-4fc0-9319-06e500ae24d7 ec79997790c215be0e63ef6c5f82a650 { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02353.RNA-Seq.chimeric.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 d47d75b2-55e8-4469-8fea-5edd0dc9789d.rna_seq.chimeric.gdc_realn.bam 36618092 BAM chimeric harmonized CPTAC3 9de8ff03-b55e-4fa2-9f54-da6f6a8cc408 e8a483b3ce75d91613c72262e2a4b67e { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor' } +C3L-02353.RNA-Seq.genomic.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 5a86b495-566b-4fff-b443-223f1232cf18.rna_seq.genomic.gdc_realn.bam 9811936457 BAM genomic harmonized CPTAC3 1ada8191-c981-4397-ba94-993e2ab3ada4 21f657a889f0aa630fe25505a3c116db { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02353.RNA-Seq.genomic.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 d47d75b2-55e8-4469-8fea-5edd0dc9789d.rna_seq.genomic.gdc_realn.bam 9987189514 BAM genomic harmonized CPTAC3 b9898452-9a8d-4515-8cb4-d4db83ff07eb 4809f69622d59abdab965a276365a714 { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor' } +C3L-02353.RNA-Seq.R1_L004.T C3L-02353 UCEC RNA-Seq tumor CPT0112780006 181207_UNC32-K00270_0137_BH2LYCBBXY_CGATGT_S14_L004_R1_001.fastq.gz 4648983028 FASTQ R1_L004 unaligned CPTAC3 fc5ae671-1623-40e6-91fa-46462bfd5231 d79b1f78dde1c0d1116d77b3ae79d208 { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02353.RNA-Seq.R1_L006.A C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 190117_UNC31-K00269_0180_AH35VKBBXY_CCGTCC_S16_L006_R1_001.fastq.gz 4058155304 FASTQ R1_L006 unaligned CPTAC3 276387f5-9cac-46d2-83b6-16832362c175 532999a1e55da30c892de7b9b034189f { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-02353.RNA-Seq.R2_L004.T C3L-02353 UCEC RNA-Seq tumor CPT0112780006 181207_UNC32-K00270_0137_BH2LYCBBXY_CGATGT_S14_L004_R2_001.fastq.gz 5062165421 FASTQ R2_L004 unaligned CPTAC3 5c918460-2c92-4a1c-9a8f-a7f16bb06db3 5c53901cbddc6eb1f092a273388252ff { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02353.RNA-Seq.R2_L006.A C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 190117_UNC31-K00269_0180_AH35VKBBXY_CCGTCC_S16_L006_R2_001.fastq.gz 4203543250 FASTQ R2_L006 unaligned CPTAC3 4e769a79-a59a-4fda-9c5b-a4515601051b 908d7e574f7e3413c4062408ab3bc880 { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-02353.RNA-Seq.transcriptome.A.hg38 C3L-02353 UCEC RNA-Seq tissue_normal CPT0112790006 5a86b495-566b-4fff-b443-223f1232cf18.rna_seq.transcriptome.gdc_realn.bam 9126514596 BAM transcriptome harmonized CPTAC3 6f892b7c-b044-46d6-988f-5019d66d8734 3cba538c39c82280ad598209e4291394 { 'aliquot_tag': 'ALQ_adffadc5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02353.RNA-Seq.transcriptome.T.hg38 C3L-02353 UCEC RNA-Seq tumor CPT0112780006 d47d75b2-55e8-4469-8fea-5edd0dc9789d.rna_seq.transcriptome.gdc_realn.bam 12559408944 BAM transcriptome harmonized CPTAC3 ee48e8fa-7243-416c-8022-86926bbe84f4 249613e74a877875c3c22cdb77d98440 { 'aliquot_tag': 'ALQ_909f8475', 'gdc_sample_type': 'Primary Tumor' } C3L-02353.WGS.A C3L-02353 UCEC WGS tissue_normal CPT0112790009 CPT0112790009.WholeGenome.RP-1303.bam 60851765369 BAM aligned CPTAC3 2bbb0bb3-1b0f-4df6-a4ba-18555d280e82 16b5c806bd15efd86d587054f8e0f4ef { 'aliquot_tag': 'ALQ_3d40b054', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02353.WGS.A.hg38 C3L-02353 UCEC WGS tissue_normal CPT0112790009 1d4863eb-7d77-4bbf-b072-15da9c2e0e2e_wgs_gdc_realn.bam 88376492161 BAM harmonized CPTAC3 de62c22e-0340-47cb-82f5-d914218d5f3a 4215a7e7eea29769bda60c50812afee6 { 'aliquot_tag': 'ALQ_3d40b054', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02353.WGS.N C3L-02353 UCEC WGS blood_normal CPT0115200002 CPT0115200002.WholeGenome.RP-1303.bam 54855374304 BAM aligned CPTAC3 d4dc6dc0-e8f2-4058-9fa2-20bf8f2938a5 f7a1c70336d66e95924c522b67ace19d { 'aliquot_tag': 'ALQ_32e8a490', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10108,13 +10823,16 @@ C3L-02354.MethArray.Green.T C3L-02354 UCEC Methylation Array tumor CPT0112910009 C3L-02354.MethArray.Red.T C3L-02354 UCEC Methylation Array tumor CPT0112910009 203027390028_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 6e268ae0-3d8c-4326-9358-333cbabc76a2 e96aa3e7a96034665c75b56780a4777e { 'aliquot_tag': 'ALQ_373a9ae5', 'gdc_sample_type': 'Primary Tumor' } C3L-02354.miRNA-Seq.T C3L-02354 UCEC miRNA-Seq tumor CPT0112910006 181108_UNC31-K00269_0162_AH255GBBXY_AGTTCC_S38_L004_R1_001.unaln.bam 214749363 BAM unaligned CPTAC3 d81426bb-55c0-4265-a4d9-c540351e7ecc ff2e0f97ee732d754bbdf9092b5630d0 { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor' } C3L-02354.miRNA-Seq.T.hg38 C3L-02354 UCEC miRNA-Seq tumor CPT0112910006 4d0b18b4-fb4c-4089-a2dc-31bff22f14f3_mirnaseq_gdc_realn.bam 237309969 BAM harmonized CPTAC3 727e48a0-ab62-4d33-8e24-c43d6dee69cd 906ea125113d9d1f3d62f18055c078bf { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor' } -C3L-02354.RNA-Seq.chimeric.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 bfff3dcf-32b0-4931-a647-d75c5f81e730.rna_seq.chimeric.gdc_realn.bam 44565284 BAM chimeric harmonized CPTAC3 8022eeaf-5aa9-49c4-bf40-321cbfce620a 5cb4f5ce23bba1d60e0dec2d67a39621 { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor' } -C3L-02354.RNA-Seq.genomic.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 bfff3dcf-32b0-4931-a647-d75c5f81e730.rna_seq.genomic.gdc_realn.bam 8102616481 BAM genomic harmonized CPTAC3 74b5374c-2b8c-4833-9d79-c36885059b9c 2693a7aad61641a74ba143de13610b49 { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor' } -C3L-02354.RNA-Seq.R1_L005.T C3L-02354 UCEC RNA-Seq tumor CPT0112910006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTTCC_S18_L005_R1_001.fastq.gz 4074053965 FASTQ R1_L005 unaligned CPTAC3 fb47a896-7af6-4e75-8fb6-81e608e926a0 20e0fa4830d52576fe800e66515dcaba { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor' } -C3L-02354.RNA-Seq.R1_.T C3L-02354 UCEC RNA-Seq tumor CPT0350130001 20210729_P3_D9_WB7988-Plate3_S45_R1_001.fastq.gz 7815601613 FASTQ R1_ unaligned CPTAC3 44b88a32-d1ab-4d7f-9c47-62072e19a656 ec694cafcf61b6a27c01c9320acfa44b { 'aliquot_tag': 'ALQ_9251f48f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02354.RNA-Seq.R2_L005.T C3L-02354 UCEC RNA-Seq tumor CPT0112910006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTTCC_S18_L005_R2_001.fastq.gz 4410879128 FASTQ R2_L005 unaligned CPTAC3 e026f8ff-6f40-48fb-91e3-68f6d41f297d 4d513305b3eb4332d5aac83a17d6e0d8 { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor' } -C3L-02354.RNA-Seq.R2_.T C3L-02354 UCEC RNA-Seq tumor CPT0350130001 20210729_P3_D9_WB7988-Plate3_S45_R2_001.fastq.gz 8237727846 FASTQ R2_ unaligned CPTAC3 30b7005d-fa87-4f87-a9e3-cfeee234f17a 496b2c8a4488fdb10afbb22a9bff9ba4 { 'aliquot_tag': 'ALQ_9251f48f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02354.RNA-Seq.transcriptome.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 bfff3dcf-32b0-4931-a647-d75c5f81e730.rna_seq.transcriptome.gdc_realn.bam 9059576272 BAM transcriptome harmonized CPTAC3 7a69989e-9416-4ebe-b19b-93272a120b31 65333e158d43444bcca77b5bbd6d7ef1 { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor' } +C3L-02354.RNA-Seq.chimeric.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 1ceb7c00-4322-4163-b467-da8aace56679.rna_seq.chimeric.gdc_realn.bam 44556437 BAM chimeric harmonized CPTAC3 ba2c9dde-5d52-455e-bf18-c5786b035c7b b076892c844a4ca411db259a33c3509a { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor' } +C3L-02354.RNA-Seq.chimeric.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0350130001 a26d3cee-fed9-4c1d-98dc-2837c9a287c0.rna_seq.chimeric.gdc_realn.bam 250696193 BAM chimeric harmonized CPTAC3 ff83bce6-9177-4a4b-98ba-23d75e9c7626 fc7acba2d5f4f8fc990ed288ada8dc11 { 'aliquot_tag': 'ALQ_9251f48f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02354.RNA-Seq.genomic.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 1ceb7c00-4322-4163-b467-da8aace56679.rna_seq.genomic.gdc_realn.bam 8103799485 BAM genomic harmonized CPTAC3 b5507e4a-ffbe-426c-9372-70082daba314 38ddf643a2ad22bd29af18ef6122b775 { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor' } +C3L-02354.RNA-Seq.genomic.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0350130001 a26d3cee-fed9-4c1d-98dc-2837c9a287c0.rna_seq.genomic.gdc_realn.bam 12372037636 BAM genomic harmonized CPTAC3 a7b06e4e-83b9-4e9c-b7bc-0a6aecf969fa 225befc43384c24fd7c20c07d0ef9edc { 'aliquot_tag': 'ALQ_9251f48f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02354.RNA-Seq.R1_L005.T C3L-02354 UCEC RNA-Seq tumor CPT0112910006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTTCC_S18_L005_R1_001.fastq.gz 4074053965 FASTQ R1_L005 unaligned CPTAC3 fb47a896-7af6-4e75-8fb6-81e608e926a0 20e0fa4830d52576fe800e66515dcaba { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02354.RNA-Seq.R2_L005.T C3L-02354 UCEC RNA-Seq tumor CPT0112910006 180508_UNC31-K00269_0128_BHTY7KBBXX_AGTTCC_S18_L005_R2_001.fastq.gz 4410879128 FASTQ R2_L005 unaligned CPTAC3 e026f8ff-6f40-48fb-91e3-68f6d41f297d 4d513305b3eb4332d5aac83a17d6e0d8 { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-02354.RNA-Seq.T C3L-02354 UCEC RNA-Seq tumor CPT0350130001 20210729_P3_D9_WB7988-Plate3_S45_R1_001.fastq.gz 7815601613 FASTQ unaligned CPTAC3 44b88a32-d1ab-4d7f-9c47-62072e19a656 ec694cafcf61b6a27c01c9320acfa44b +C3L-02354.RNA-Seq.T C3L-02354 UCEC RNA-Seq tumor CPT0350130001 20210729_P3_D9_WB7988-Plate3_S45_R2_001.fastq.gz 8237727846 FASTQ unaligned CPTAC3 30b7005d-fa87-4f87-a9e3-cfeee234f17a 496b2c8a4488fdb10afbb22a9bff9ba4 +C3L-02354.RNA-Seq.transcriptome.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0112910006 1ceb7c00-4322-4163-b467-da8aace56679.rna_seq.transcriptome.gdc_realn.bam 10437789646 BAM transcriptome harmonized CPTAC3 3e0c3f5c-be53-40c9-b2b7-af78d9135b4d c5c7dab1987bb2575e029324d8525c97 { 'aliquot_tag': 'ALQ_a7858774', 'gdc_sample_type': 'Primary Tumor' } +C3L-02354.RNA-Seq.transcriptome.T.hg38 C3L-02354 UCEC RNA-Seq tumor CPT0350130001 a26d3cee-fed9-4c1d-98dc-2837c9a287c0.rna_seq.transcriptome.gdc_realn.bam 6725121368 BAM transcriptome harmonized CPTAC3 70727568-bcd9-4735-a272-95fe158f7015 068d4ecb10d1a2f458c8f92d5aee4940 { 'aliquot_tag': 'ALQ_9251f48f', 'gdc_sample_type': 'Primary Tumor' } C3L-02354.WGS.N C3L-02354 UCEC WGS blood_normal CPT0115210002 CPT0115210002.WholeGenome.RP-1303.bam 59514184589 BAM aligned CPTAC3 71c79ef7-a9b7-4207-9256-73fc0dd4057c 8aa4ccec42fe0771831084f528e4e7cb { 'aliquot_tag': 'ALQ_f888d20', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02354.WGS.N.hg38 C3L-02354 UCEC WGS blood_normal CPT0115210002 e719b2aa-01be-4930-94e1-0938b36ef53c_wgs_gdc_realn.bam 86806174458 BAM harmonized CPTAC3 879d8d6e-fc01-4c08-bc70-ca98ef1fa5d7 c7eb1f2f79a7f7b44aff3fa12fb23bb5 { 'aliquot_tag': 'ALQ_f888d20', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02354.WGS.T C3L-02354 UCEC WGS tumor CPT0112910009 CPT0112910009.WholeGenome.RP-1303.bam 66182749311 BAM aligned CPTAC3 62ea86c9-391d-4cfb-b251-6e707435a851 4b6a83cca39d1b421790b5e89f9bd5c5 { 'aliquot_tag': 'ALQ_373a9ae5', 'gdc_sample_type': 'Primary Tumor' } @@ -10127,13 +10845,16 @@ C3L-02357.MethArray.Green.T C3L-02357 UCEC Methylation Array tumor CPT0113330009 C3L-02357.MethArray.Red.T C3L-02357 UCEC Methylation Array tumor CPT0113330009 203219650006_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 a5d9a3bb-77a6-4695-ae2e-910caa1dc687 6acd8f00717e2f798651355acbf599aa { 'aliquot_tag': 'ALQ_4a16e157', 'gdc_sample_type': 'Primary Tumor' } C3L-02357.miRNA-Seq.T C3L-02357 UCEC miRNA-Seq tumor CPT0113330006 190108_UNC31-K00269_0176_AHYGLVBBXX_CACCGG_S30_L003_R1_001.unaln.bam 169174821 BAM unaligned CPTAC3 d93d65f2-3f80-47ae-9994-c29245c4c057 6f068cfcd4ce37fdb9ebeed0c37a8071 { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor' } C3L-02357.miRNA-Seq.T.hg38 C3L-02357 UCEC miRNA-Seq tumor CPT0113330006 70453f22-e042-4d16-a50a-7f613cec41ba_mirnaseq_gdc_realn.bam 180900967 BAM harmonized CPTAC3 f765361c-1733-4c52-b242-2fc9a0fc8096 371fd4a7ea16cd875716c162e3c26d2a { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor' } -C3L-02357.RNA-Seq.chimeric.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 b3b69bc5-2a76-4c3b-8399-872bfa214ba7.rna_seq.chimeric.gdc_realn.bam 23472056 BAM chimeric harmonized CPTAC3 3943e7e9-1ead-406b-b2df-830f6360645f 8e78a66854b940f4cb418338963bd5df { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor' } -C3L-02357.RNA-Seq.genomic.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 b3b69bc5-2a76-4c3b-8399-872bfa214ba7.rna_seq.genomic.gdc_realn.bam 8006413127 BAM genomic harmonized CPTAC3 d81d20c9-192c-4355-90e3-c423fc2e50e9 bcb8c3fd624d15215bb792ad2ee4495a { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor' } -C3L-02357.RNA-Seq.R1_L003.T C3L-02357 UCEC RNA-Seq tumor CPT0113330006 181207_UNC32-K00270_0137_BH2LYCBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 3325096909 FASTQ R1_L003 unaligned CPTAC3 9de78dc5-bd69-4f6e-88ca-976587003124 725e19a2ccb7ee8cba21669cd7ec8acf { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor' } -C3L-02357.RNA-Seq.R1_.T C3L-02357 UCEC RNA-Seq tumor CPT0350160001 20210729_P3_C7_WB7988-Plate3_S31_R1_001.fastq.gz 5995121292 FASTQ R1_ unaligned CPTAC3 611d4cdd-9cf9-4cc6-8e65-f29191cf1070 49951835f6dda2cc78ea3e6f625e02b0 { 'aliquot_tag': 'ALQ_5ab17bff', 'gdc_sample_type': 'Primary Tumor' } -C3L-02357.RNA-Seq.R2_L003.T C3L-02357 UCEC RNA-Seq tumor CPT0113330006 181207_UNC32-K00270_0137_BH2LYCBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 3636538136 FASTQ R2_L003 unaligned CPTAC3 9ed83cfd-1128-4782-89bc-98cfa1a103b2 2d9b225178c17b788310c1466ed7e879 { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor' } -C3L-02357.RNA-Seq.R2_.T C3L-02357 UCEC RNA-Seq tumor CPT0350160001 20210729_P3_C7_WB7988-Plate3_S31_R2_001.fastq.gz 6202429288 FASTQ R2_ unaligned CPTAC3 6448cb04-d671-43b9-86c0-81b68b092a57 37aec7ca90ffc861293e932b93fccbbb { 'aliquot_tag': 'ALQ_5ab17bff', 'gdc_sample_type': 'Primary Tumor' } -C3L-02357.RNA-Seq.transcriptome.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 b3b69bc5-2a76-4c3b-8399-872bfa214ba7.rna_seq.transcriptome.gdc_realn.bam 9792827015 BAM transcriptome harmonized CPTAC3 e39b46cb-36ba-4ee1-bdcc-a862c0011354 c5e7b54bfdce29b7e470012ec387ff31 { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor' } +C3L-02357.RNA-Seq.chimeric.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 1d6d864b-4d91-4c43-9581-e8b4ba4f5b0b.rna_seq.chimeric.gdc_realn.bam 23456565 BAM chimeric harmonized CPTAC3 8ec463a6-4af6-4131-a045-208fa1da5b5f dfc53f2c8ea4798a8d23a31e81dbd532 { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor' } +C3L-02357.RNA-Seq.chimeric.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0350160001 5f65018b-131c-4f16-a280-e41bd93a67a9.rna_seq.chimeric.gdc_realn.bam 210533007 BAM chimeric harmonized CPTAC3 21b604a6-5276-46ea-9fc9-2f0d9a30ea2f 6375489c7a51e1488e98dbb2584a2ae7 { 'aliquot_tag': 'ALQ_5ab17bff', 'gdc_sample_type': 'Primary Tumor' } +C3L-02357.RNA-Seq.genomic.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 1d6d864b-4d91-4c43-9581-e8b4ba4f5b0b.rna_seq.genomic.gdc_realn.bam 8007483794 BAM genomic harmonized CPTAC3 7fff9088-ab42-4cd4-926e-11e9232811db 52b7c87f0cbc7da3c2813292cdfce498 { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor' } +C3L-02357.RNA-Seq.genomic.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0350160001 5f65018b-131c-4f16-a280-e41bd93a67a9.rna_seq.genomic.gdc_realn.bam 9943880823 BAM genomic harmonized CPTAC3 cf5c8253-898a-4db8-8df1-bbea2276cb45 70751cc86847bc132602ac81c5c40c86 { 'aliquot_tag': 'ALQ_5ab17bff', 'gdc_sample_type': 'Primary Tumor' } +C3L-02357.RNA-Seq.R1_L003.T C3L-02357 UCEC RNA-Seq tumor CPT0113330006 181207_UNC32-K00270_0137_BH2LYCBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 3325096909 FASTQ R1_L003 unaligned CPTAC3 9de78dc5-bd69-4f6e-88ca-976587003124 725e19a2ccb7ee8cba21669cd7ec8acf { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02357.RNA-Seq.R2_L003.T C3L-02357 UCEC RNA-Seq tumor CPT0113330006 181207_UNC32-K00270_0137_BH2LYCBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 3636538136 FASTQ R2_L003 unaligned CPTAC3 9ed83cfd-1128-4782-89bc-98cfa1a103b2 2d9b225178c17b788310c1466ed7e879 { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02357.RNA-Seq.T C3L-02357 UCEC RNA-Seq tumor CPT0350160001 20210729_P3_C7_WB7988-Plate3_S31_R1_001.fastq.gz 5995121292 FASTQ unaligned CPTAC3 611d4cdd-9cf9-4cc6-8e65-f29191cf1070 49951835f6dda2cc78ea3e6f625e02b0 +C3L-02357.RNA-Seq.T C3L-02357 UCEC RNA-Seq tumor CPT0350160001 20210729_P3_C7_WB7988-Plate3_S31_R2_001.fastq.gz 6202429288 FASTQ unaligned CPTAC3 6448cb04-d671-43b9-86c0-81b68b092a57 37aec7ca90ffc861293e932b93fccbbb +C3L-02357.RNA-Seq.transcriptome.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0113330006 1d6d864b-4d91-4c43-9581-e8b4ba4f5b0b.rna_seq.transcriptome.gdc_realn.bam 11112633416 BAM transcriptome harmonized CPTAC3 e3e6a107-fc6e-420e-9476-2267ec54ca80 9567e5776d3f77fef1866156ba9f6419 { 'aliquot_tag': 'ALQ_daa9fcc6', 'gdc_sample_type': 'Primary Tumor' } +C3L-02357.RNA-Seq.transcriptome.T.hg38 C3L-02357 UCEC RNA-Seq tumor CPT0350160001 5f65018b-131c-4f16-a280-e41bd93a67a9.rna_seq.transcriptome.gdc_realn.bam 4811628763 BAM transcriptome harmonized CPTAC3 4f9f153a-8693-4752-8be6-e3656e5d04af c68634653e77c7b33ce7f1b014ec8e96 { 'aliquot_tag': 'ALQ_5ab17bff', 'gdc_sample_type': 'Primary Tumor' } C3L-02357.WGS.N C3L-02357 UCEC WGS blood_normal CPT0115280002 CPT0115280002.WholeGenome.RP-1303.bam 56154592805 BAM aligned CPTAC3 4b061097-3159-410c-9325-e497e24ba551 47a4c051c0c1ad5b3a94c0e5d28b7153 { 'aliquot_tag': 'ALQ_298ef51', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02357.WGS.N.hg38 C3L-02357 UCEC WGS blood_normal CPT0115280002 69e9418e-fb8c-45aa-ab06-5ac6825b63d2_wgs_gdc_realn.bam 81027382280 BAM harmonized CPTAC3 9115dbbe-ef7e-4c69-aa6d-dd8f24ae0ed8 2332cacdfb41ff446a06f63afee8ce1f { 'aliquot_tag': 'ALQ_298ef51', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02357.WGS.T C3L-02357 UCEC WGS tumor CPT0113330009 CPT0113330009.WholeGenome.RP-1303.bam 56565914203 BAM aligned CPTAC3 08a59d25-484e-4eab-885e-3fd71620bbd9 e0838438c2776aaa7bc596ec5cf1b8eb { 'aliquot_tag': 'ALQ_4a16e157', 'gdc_sample_type': 'Primary Tumor' } @@ -10152,12 +10873,12 @@ C3L-02358.miRNA-Seq.T C3L-02358 LSCC miRNA-Seq tumor CPT0112720009 181219_UNC31- C3L-02358.miRNA-Seq.T.hg38 C3L-02358 LSCC miRNA-Seq tumor CPT0112720009 eef7c418-ef4d-487a-9d2c-4ac0b7e9c357_mirnaseq_gdc_realn.bam 297063552 BAM harmonized CPTAC3 b951ff8c-218d-4821-8303-d5c88df2b0b3 960f757a9724e1a68c2b973bb36e03ca { 'aliquot_tag': 'ALQ_4a908145', 'gdc_sample_type': 'Primary Tumor' } C3L-02358.RNA-Seq.chimeric.A.hg38 C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 59a237f7-959f-454c-a3d0-a3f464bc1e5d.rna_seq.chimeric.gdc_realn.bam 30066335 BAM chimeric harmonized CPTAC3 c350d7e8-a202-442f-8db4-ee7e7ab86915 a9a356c9dbda1037ff70713512e3eaca { 'aliquot_tag': 'ALQ_77f0a8f5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02358.RNA-Seq.chimeric.T.hg38 C3L-02358 LSCC RNA-Seq tumor CPT0112720009 a33b30ff-f6cb-464a-b917-536714720351.rna_seq.chimeric.gdc_realn.bam 27268601 BAM chimeric harmonized CPTAC3 567ba9b3-4970-42e6-b2a5-1fbf429d1ab5 1fae13ea13166293ddbe8df62d06d206 { 'aliquot_tag': 'ALQ_4a908145', 'gdc_sample_type': 'Primary Tumor' } -C3L-02358.RNA-Seq.genomic.A.hg38 C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 59a237f7-959f-454c-a3d0-a3f464bc1e5d.rna_seq.genomic.gdc_realn.bam 8192115138 BAM genomic harmonized CPTAC3 5c9a948c-521b-4954-b5fe-a3b80b0a64a4 6ca1fa78d22be3ed715bb20f705af230 { 'aliquot_tag': 'ALQ_77f0a8f5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02358.RNA-Seq.genomic.T.hg38 C3L-02358 LSCC RNA-Seq tumor CPT0112720009 a33b30ff-f6cb-464a-b917-536714720351.rna_seq.genomic.gdc_realn.bam 7800820984 BAM genomic harmonized CPTAC3 10cb9ce9-1ea8-4e45-8b1a-2210087f73f4 8b28392dd60c99629adb2c71eb366946 { 'aliquot_tag': 'ALQ_4a908145', 'gdc_sample_type': 'Primary Tumor' } -C3L-02358.RNA-Seq.R1_L006.A C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTTCC_S22_L006_R1_001.fastq.gz 3733619091 FASTQ R1_L006 unaligned CPTAC3 236bb774-3d11-4c6e-9176-e1eb0156fcff 498de41960f28b8a2419ace708778fd3 { 'aliquot_tag': 'ALQ_77f0a8f5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02358.RNA-Seq.R1_L006.T C3L-02358 LSCC RNA-Seq tumor CPT0112720009 180925_UNC32-K00270_0122_BHWNF7BBXX_CAGATC_S21_L006_R1_001.fastq.gz 3765277595 FASTQ R1_L006 unaligned CPTAC3 ecbf1693-e7ea-4827-9399-62f8aa51580c 6c94218c1b0d59f8f2d793adf64ca988 { 'aliquot_tag': 'ALQ_4a908145', 'gdc_sample_type': 'Primary Tumor' } -C3L-02358.RNA-Seq.R2_L006.A C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTTCC_S22_L006_R2_001.fastq.gz 3864569121 FASTQ R2_L006 unaligned CPTAC3 115fe20f-5864-4c22-aea0-15508567ce43 5edecba1318b66101f47e089c53b2254 { 'aliquot_tag': 'ALQ_77f0a8f5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02358.RNA-Seq.R2_L006.T C3L-02358 LSCC RNA-Seq tumor CPT0112720009 180925_UNC32-K00270_0122_BHWNF7BBXX_CAGATC_S21_L006_R2_001.fastq.gz 3970405337 FASTQ R2_L006 unaligned CPTAC3 6a371efe-48bf-46c1-a0ec-1cbdf4ec213c 0c468c7fa7ea308b3db34501be28551c { 'aliquot_tag': 'ALQ_4a908145', 'gdc_sample_type': 'Primary Tumor' } +C3L-02358.RNA-Seq.genomic.A.hg38 C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 59a237f7-959f-454c-a3d0-a3f464bc1e5d.rna_seq.genomic.gdc_realn.bam 8192115138 BAM genomic harmonized CPTAC3 56712a0f-31c0-4651-96a5-809017a7d033 6ca1fa78d22be3ed715bb20f705af230 { 'aliquot_tag': 'ALQ_77f0a8f5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02358.RNA-Seq.genomic.T.hg38 C3L-02358 LSCC RNA-Seq tumor CPT0112720009 a33b30ff-f6cb-464a-b917-536714720351.rna_seq.genomic.gdc_realn.bam 7800820984 BAM genomic harmonized CPTAC3 64765784-71ac-4ea3-8095-014122fb1300 8b28392dd60c99629adb2c71eb366946 { 'aliquot_tag': 'ALQ_4a908145', 'gdc_sample_type': 'Primary Tumor' } +C3L-02358.RNA-Seq.R1_L006.A C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTTCC_S22_L006_R1_001.fastq.gz 3733619091 FASTQ R1_L006 unaligned CPTAC3 236bb774-3d11-4c6e-9176-e1eb0156fcff 498de41960f28b8a2419ace708778fd3 { 'aliquot_tag': 'ALQ_77f0a8f5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-02358.RNA-Seq.R1_L006.T C3L-02358 LSCC RNA-Seq tumor CPT0112720009 180925_UNC32-K00270_0122_BHWNF7BBXX_CAGATC_S21_L006_R1_001.fastq.gz 3765277595 FASTQ R1_L006 unaligned CPTAC3 ecbf1693-e7ea-4827-9399-62f8aa51580c 6c94218c1b0d59f8f2d793adf64ca988 { 'aliquot_tag': 'ALQ_4a908145', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02358.RNA-Seq.R2_L006.A C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTTCC_S22_L006_R2_001.fastq.gz 3864569121 FASTQ R2_L006 unaligned CPTAC3 115fe20f-5864-4c22-aea0-15508567ce43 5edecba1318b66101f47e089c53b2254 { 'aliquot_tag': 'ALQ_77f0a8f5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-02358.RNA-Seq.R2_L006.T C3L-02358 LSCC RNA-Seq tumor CPT0112720009 180925_UNC32-K00270_0122_BHWNF7BBXX_CAGATC_S21_L006_R2_001.fastq.gz 3970405337 FASTQ R2_L006 unaligned CPTAC3 6a371efe-48bf-46c1-a0ec-1cbdf4ec213c 0c468c7fa7ea308b3db34501be28551c { 'aliquot_tag': 'ALQ_4a908145', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02358.RNA-Seq.transcriptome.A.hg38 C3L-02358 LSCC RNA-Seq tissue_normal CPT0112730009 59a237f7-959f-454c-a3d0-a3f464bc1e5d.rna_seq.transcriptome.gdc_realn.bam 9392318007 BAM transcriptome harmonized CPTAC3 dc68af7d-8244-4eb7-95d7-97b710278ce6 80888d4acfc7c28d1bb72c9583e1bdb8 { 'aliquot_tag': 'ALQ_77f0a8f5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02358.RNA-Seq.transcriptome.T.hg38 C3L-02358 LSCC RNA-Seq tumor CPT0112720009 a33b30ff-f6cb-464a-b917-536714720351.rna_seq.transcriptome.gdc_realn.bam 10677133217 BAM transcriptome harmonized CPTAC3 a72521ec-f8be-4ba7-9cc7-b2cc361fc00a 365e2f2c1892d780dddb64315d092714 { 'aliquot_tag': 'ALQ_4a908145', 'gdc_sample_type': 'Primary Tumor' } C3L-02358.WGS.A C3L-02358 LSCC WGS tissue_normal CPT0112730006 CPT0112730006.WholeGenome.RP-1303.bam 55630381245 BAM aligned CPTAC3 b3257c80-939e-401e-b391-a1ecd90ac8ba 5a8eba59ed2ec38768ffbfed66a836c7 { 'aliquot_tag': 'ALQ_e74fb564', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -10180,16 +10901,16 @@ C3L-02364.miRNA-Seq.A C3L-02364 CCRCC miRNA-Seq tissue_normal CPT0113280009 1901 C3L-02364.miRNA-Seq.A.hg38 C3L-02364 CCRCC miRNA-Seq tissue_normal CPT0113280009 d14c8b6e-c5d2-46a4-8f6f-3bb7ba7de995_mirnaseq_gdc_realn.bam 256037566 BAM harmonized CPTAC3 06fae9cc-7961-40e6-9752-54f94e12dc37 94cce491a9020f772571a403d4d4a1ad { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02364.miRNA-Seq.T C3L-02364 CCRCC miRNA-Seq tumor CPT0113260006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAACTA_S29_L003_R1_001.unaln.bam 290712857 BAM unaligned CPTAC3 a1a0086f-3471-4b08-89c9-673cc988e3bd c5177460feec689e1c0d724bc410fdbb { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor' } C3L-02364.miRNA-Seq.T.hg38 C3L-02364 CCRCC miRNA-Seq tumor CPT0113260006 279eb787-d0d8-4ece-ab48-c23db4b7bfc5_mirnaseq_gdc_realn.bam 320699990 BAM harmonized CPTAC3 ef9d17f8-dd6a-4c0e-9bb2-cd7da24fd6c9 b36ff62fc11ded09a8d8c870331f47ad { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor' } -C3L-02364.RNA-Seq.chimeric.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 533e6796-fe56-48fe-9f1e-5bc0b16a0512.rna_seq.chimeric.gdc_realn.bam 150410516 BAM chimeric harmonized CPTAC3 52b377a8-1c92-402c-b8c1-481c2ad21d06 216585329b3495388291c3d77fa29720 { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02364.RNA-Seq.chimeric.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 35468e4d-b9f1-4997-868c-7c6e35dd7e84.rna_seq.chimeric.gdc_realn.bam 30994692 BAM chimeric harmonized CPTAC3 705d702e-8864-46eb-80b1-efc36179a9ce 9bb6495c5fbd1302a955790414284301 { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor' } -C3L-02364.RNA-Seq.genomic.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 533e6796-fe56-48fe-9f1e-5bc0b16a0512.rna_seq.genomic.gdc_realn.bam 8366037812 BAM genomic harmonized CPTAC3 7a00a7cd-c9ae-415b-b722-cb94aa57f96c a48fbe82eda98fe95ba9a2da74001db0 { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02364.RNA-Seq.genomic.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 35468e4d-b9f1-4997-868c-7c6e35dd7e84.rna_seq.genomic.gdc_realn.bam 7649509462 BAM genomic harmonized CPTAC3 7efee298-5910-4d17-afac-81f4c005d24c f181ab8c3104a08f2840edb20c5e3881 { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor' } -C3L-02364.RNA-Seq.R1_L003.T C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3451829844 FASTQ R1_L003 unaligned CPTAC3 5e5a9caa-7311-4fd9-b74f-88bfa77fd888 b3cb476a9832586c69a9e2dce05f699c { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor' } -C3L-02364.RNA-Seq.R1_L004.A C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L004_R1_001.fastq.gz 3592581909 FASTQ R1_L004 unaligned CPTAC3 0760a34f-9aea-4ff2-b483-d839ed122de2 fee70dafcc61ed2651ba9b5a4aeb2668 { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02364.RNA-Seq.R2_L003.T C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 3820695719 FASTQ R2_L003 unaligned CPTAC3 383c1c61-a592-4c23-81cf-93b388dd9c49 3fb31b4b5706c911c0e4ef705ffe7e3a { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor' } -C3L-02364.RNA-Seq.R2_L004.A C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L004_R2_001.fastq.gz 3977423642 FASTQ R2_L004 unaligned CPTAC3 0eef987f-3753-4acb-9eaf-a53b8ea4eadc 733367344938884f3c0d9d6d73fe696b { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02364.RNA-Seq.transcriptome.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 533e6796-fe56-48fe-9f1e-5bc0b16a0512.rna_seq.transcriptome.gdc_realn.bam 7833231240 BAM transcriptome harmonized CPTAC3 372e46b8-f3eb-48de-8096-f179b1706323 0f6f396bbed40f04a7181513032064cd { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02364.RNA-Seq.transcriptome.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 35468e4d-b9f1-4997-868c-7c6e35dd7e84.rna_seq.transcriptome.gdc_realn.bam 7632962021 BAM transcriptome harmonized CPTAC3 a7a71e75-8753-483d-af00-12ad6fdfe752 88be06bbaff436389ce4e2fe67522890 { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor' } +C3L-02364.RNA-Seq.chimeric.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 2d72c679-d135-42e3-81d5-4102319626d2.rna_seq.chimeric.gdc_realn.bam 150384525 BAM chimeric harmonized CPTAC3 400a2181-f03d-4ef9-b3d9-6c3466a54720 a30f209e04c849e2fd23d84510f3804a { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02364.RNA-Seq.chimeric.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 c20387e2-dfe7-4a88-b6fa-6ceba117b65d.rna_seq.chimeric.gdc_realn.bam 30975094 BAM chimeric harmonized CPTAC3 d6f3517e-77b2-4830-8ecc-8b1cde182ba5 70e529813c7dd3a3e9b3d9f1c6a610cd { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor' } +C3L-02364.RNA-Seq.genomic.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 2d72c679-d135-42e3-81d5-4102319626d2.rna_seq.genomic.gdc_realn.bam 8366887850 BAM genomic harmonized CPTAC3 197708f8-3949-4d30-983c-7a61312f3980 bc4b8dbb07f660e2996bfb3548ba7438 { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02364.RNA-Seq.genomic.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 c20387e2-dfe7-4a88-b6fa-6ceba117b65d.rna_seq.genomic.gdc_realn.bam 7650838719 BAM genomic harmonized CPTAC3 4d9c4a88-7c06-44cc-ab8d-6a9c775da850 955304ff688153cc3c4a147ca91372ee { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor' } +C3L-02364.RNA-Seq.R1_L003.T C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3451829844 FASTQ R1_L003 unaligned CPTAC3 5e5a9caa-7311-4fd9-b74f-88bfa77fd888 b3cb476a9832586c69a9e2dce05f699c { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02364.RNA-Seq.R1_L004.A C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L004_R1_001.fastq.gz 3592581909 FASTQ R1_L004 unaligned CPTAC3 0760a34f-9aea-4ff2-b483-d839ed122de2 fee70dafcc61ed2651ba9b5a4aeb2668 { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02364.RNA-Seq.R2_L003.T C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 3820695719 FASTQ R2_L003 unaligned CPTAC3 383c1c61-a592-4c23-81cf-93b388dd9c49 3fb31b4b5706c911c0e4ef705ffe7e3a { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02364.RNA-Seq.R2_L004.A C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L004_R2_001.fastq.gz 3977423642 FASTQ R2_L004 unaligned CPTAC3 0eef987f-3753-4acb-9eaf-a53b8ea4eadc 733367344938884f3c0d9d6d73fe696b { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-02364.RNA-Seq.transcriptome.A.hg38 C3L-02364 CCRCC RNA-Seq tissue_normal CPT0113280009 2d72c679-d135-42e3-81d5-4102319626d2.rna_seq.transcriptome.gdc_realn.bam 8912448620 BAM transcriptome harmonized CPTAC3 5f1894ac-c6f0-4e16-b043-3130610b6651 ad822cc52e342f0cba3cca62e3d907ea { 'aliquot_tag': 'ALQ_f69a03e3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02364.RNA-Seq.transcriptome.T.hg38 C3L-02364 CCRCC RNA-Seq tumor CPT0113260006 c20387e2-dfe7-4a88-b6fa-6ceba117b65d.rna_seq.transcriptome.gdc_realn.bam 8629429789 BAM transcriptome harmonized CPTAC3 ec7e390c-1f89-46fd-b90b-53394c15e64e 9a22c16339e5e3640c0889c71ef7dd79 { 'aliquot_tag': 'ALQ_d915a013', 'gdc_sample_type': 'Primary Tumor' } C3L-02364.WGS.A C3L-02364 CCRCC WGS tissue_normal CPT0113280006 CPT0113280006.WholeGenome.RP-1303.bam 60983564762 BAM aligned CPTAC3 72f87f5c-9e87-4187-b9d4-81eac9befeb7 a9dffecf2c7f964ee70bd6b43e575077 { 'aliquot_tag': 'ALQ_66251e72', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02364.WGS.A.hg38 C3L-02364 CCRCC WGS tissue_normal CPT0113280006 a96ef00f-c92d-40cc-b40f-f804e9fd3b63_wgs_gdc_realn.bam 89049644192 BAM harmonized CPTAC3 9de6301d-0126-4bc9-93c4-977bbd40b927 6d268ee8458235dc266d7f8e3c0b21cc { 'aliquot_tag': 'ALQ_66251e72', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02364.WGS.N C3L-02364 CCRCC WGS blood_normal CPT0115270002 CPT0115270002.WholeGenome.RP-1303.bam 50169806576 BAM aligned CPTAC3 92678a26-775d-4c72-beb2-640e1697e1a5 f1800f7b09c3099a15fd62865888dfda { 'aliquot_tag': 'ALQ_80c87880', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10203,6 +10924,7 @@ C3L-02364.WXS.N.hg38 C3L-02364 CCRCC WXS blood_normal CPT0115270002 be8f1237-941 C3L-02364.WXS.T C3L-02364 CCRCC WXS tumor CPT0113260009 CPT0113260009.WholeExome.RP-1303.bam 19066566800 BAM aligned CPTAC3 f95b60c0-6401-4e3a-9e3c-60ebbcc31cb2 0407b9f6d24dafaca6cb148598c7b6ed { 'aliquot_tag': 'ALQ_49aabd82', 'gdc_sample_type': 'Primary Tumor' } C3L-02364.WXS.T.hg38 C3L-02364 CCRCC WXS tumor CPT0113260009 e132f354-c423-4c15-bc4b-20373f2f57b0_wxs_gdc_realn.bam 26340453776 BAM harmonized CPTAC3 6aeae5c1-1438-4c81-b877-3fbc09c1a6da d627ccc95502c3d0f3077004127fe0e2 { 'aliquot_tag': 'ALQ_49aabd82', 'gdc_sample_type': 'Primary Tumor' } C3L-02365.DUP_6a761e9e.WGS.T C3L-02365 LUAD WGS tumor CPT0114840009_2 CPT0114840009_2.WholeGenome.RP-2158.bam 108866876243 BAM aligned CPTAC3 4d70aa73-3ff9-433b-b0be-4b20a53449af 74d62ef84633e94b31a1178dcc879cd8 { 'aliquot_tag': 'DUP_6a761e9e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot' } +C3L-02365.DUP_6a761e9e.WGS.T.hg38 C3L-02365 LUAD WGS tumor CPT0114840009_2 8fbc7396-cd6b-440b-8c5a-1684ddea1f4e_wgs_gdc_realn.bam 329651322633 BAM harmonized CPTAC3 5cc33d62-51ef-4b24-a3ba-bccae0ed86ce b0c0463ace7902be11bc674c17836eae { 'aliquot_tag': 'DUP_6a761e9e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot' } C3L-02365.MethArray.Green.A C3L-02365 LUAD Methylation Array tissue_normal CPT0114880006 203028200014_R03C01_Grn.idat 13676226 IDAT Green NA CPTAC3 9c3593b4-6c5b-4da1-8084-a9d4dcce816f ee342bb20ebe602c5992e30e21836621 { 'aliquot_tag': 'ALQ_219039a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02365.MethArray.Green.T C3L-02365 LUAD Methylation Array tumor CPT0114840009 202234370079_R04C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a6a029c9-907e-42bf-b35e-9327945ee385 6d7a82e273411bf0ba42c3138f6a6622 { 'aliquot_tag': 'ALQ_5756f30a', 'gdc_sample_type': 'Primary Tumor' } C3L-02365.MethArray.Red.A C3L-02365 LUAD Methylation Array tissue_normal CPT0114880006 203028200014_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 f777f75b-bbe5-44de-89d5-a303cd6b132c 32dbb653f900c4616e3f3646541972e7 { 'aliquot_tag': 'ALQ_219039a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -10214,11 +10936,11 @@ C3L-02365.miRNA-Seq.T.hg38 C3L-02365 LUAD miRNA-Seq tumor CPT0114840006 bdaebd87 C3L-02365.RNA-Seq.chimeric.A.hg38 C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 7ae6fc22-3cc3-435c-8c4f-a846e4c9f720.rna_seq.chimeric.gdc_realn.bam 41680663 BAM chimeric harmonized CPTAC3 e49bb3f1-1603-44a5-a2bf-8472a52715c0 c2138312dcbe8c1d4ff0c454265d3089 { 'aliquot_tag': 'ALQ_92a61e0b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02365.RNA-Seq.chimeric.T.hg38 C3L-02365 LUAD RNA-Seq tumor CPT0114840006 6c3b2db1-8a86-422f-8567-1328345be457.rna_seq.chimeric.gdc_realn.bam 186437140 BAM chimeric harmonized CPTAC3 4178b378-39a6-4f1f-8357-965ebd825b58 6a6c18e1ff076ca8cef8977ddc00d85f { 'aliquot_tag': 'ALQ_c7e9ee9b', 'gdc_sample_type': 'Primary Tumor' } C3L-02365.RNA-Seq.genomic.A.hg38 C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 7ae6fc22-3cc3-435c-8c4f-a846e4c9f720.rna_seq.genomic.gdc_realn.bam 8407803483 BAM genomic harmonized CPTAC3 ad425303-24db-4abd-be3f-7853e743c6e5 445c54d6153c268fd7b1fe8a2ea447f4 { 'aliquot_tag': 'ALQ_92a61e0b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02365.RNA-Seq.genomic.T.hg38 C3L-02365 LUAD RNA-Seq tumor CPT0114840006 6c3b2db1-8a86-422f-8567-1328345be457.rna_seq.genomic.gdc_realn.bam 9610951003 BAM genomic harmonized CPTAC3 88564e25-b846-4ad8-b2fa-6c4ac82e6d56 e593e582671b0f00ecfa18547678f40c { 'aliquot_tag': 'ALQ_c7e9ee9b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02365.RNA-Seq.R1_L004.T C3L-02365 LUAD RNA-Seq tumor CPT0114840006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGTACG_S14_L004_R1_001.fastq.gz 4055727794 FASTQ R1_L004 unaligned CPTAC3 def212c8-4bb1-491c-a15e-fa5497f6ce76 4f76ff6a92b4c3d7585295f876388638 { 'aliquot_tag': 'ALQ_c7e9ee9b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02365.RNA-Seq.R1_L005.A C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 171205_UNC32-K00270_0069_BHN2HGBBXX_CGATGT_S18_L005_R1_001.fastq.gz 4160773101 FASTQ R1_L005 unaligned CPTAC3 14b2e96f-9ac2-44ff-bf6f-2edd8b731c80 0ad019ad24ad132718a6ac326f1e0ef7 { 'aliquot_tag': 'ALQ_92a61e0b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02365.RNA-Seq.R2_L004.T C3L-02365 LUAD RNA-Seq tumor CPT0114840006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGTACG_S14_L004_R2_001.fastq.gz 4579933959 FASTQ R2_L004 unaligned CPTAC3 aeea12ca-8e11-48ad-8e9e-1ffb0c0a489d 00b37d7a5075bba83d32a55ef6b0bb83 { 'aliquot_tag': 'ALQ_c7e9ee9b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02365.RNA-Seq.R2_L005.A C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 171205_UNC32-K00270_0069_BHN2HGBBXX_CGATGT_S18_L005_R2_001.fastq.gz 4349949528 FASTQ R2_L005 unaligned CPTAC3 b09f37a7-3a9a-4f98-873d-d53d6502a79b f6e0fd433f183b2c5f4abd187c53f2e3 { 'aliquot_tag': 'ALQ_92a61e0b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02365.RNA-Seq.genomic.T.hg38 C3L-02365 LUAD RNA-Seq tumor CPT0114840006 6c3b2db1-8a86-422f-8567-1328345be457.rna_seq.genomic.gdc_realn.bam 9610951003 BAM genomic harmonized CPTAC3 a5ccbff2-a184-4b71-a65a-8ef8bccf2f50 e593e582671b0f00ecfa18547678f40c { 'aliquot_tag': 'ALQ_c7e9ee9b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02365.RNA-Seq.R1_L004.T C3L-02365 LUAD RNA-Seq tumor CPT0114840006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGTACG_S14_L004_R1_001.fastq.gz 4055727794 FASTQ R1_L004 unaligned CPTAC3 def212c8-4bb1-491c-a15e-fa5497f6ce76 4f76ff6a92b4c3d7585295f876388638 { 'aliquot_tag': 'ALQ_c7e9ee9b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02365.RNA-Seq.R1_L005.A C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 171205_UNC32-K00270_0069_BHN2HGBBXX_CGATGT_S18_L005_R1_001.fastq.gz 4160773101 FASTQ R1_L005 unaligned CPTAC3 14b2e96f-9ac2-44ff-bf6f-2edd8b731c80 0ad019ad24ad132718a6ac326f1e0ef7 { 'aliquot_tag': 'ALQ_92a61e0b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02365.RNA-Seq.R2_L004.T C3L-02365 LUAD RNA-Seq tumor CPT0114840006 171109_UNC31-K00269_0091_BHMFGTBBXX_CGTACG_S14_L004_R2_001.fastq.gz 4579933959 FASTQ R2_L004 unaligned CPTAC3 aeea12ca-8e11-48ad-8e9e-1ffb0c0a489d 00b37d7a5075bba83d32a55ef6b0bb83 { 'aliquot_tag': 'ALQ_c7e9ee9b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02365.RNA-Seq.R2_L005.A C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 171205_UNC32-K00270_0069_BHN2HGBBXX_CGATGT_S18_L005_R2_001.fastq.gz 4349949528 FASTQ R2_L005 unaligned CPTAC3 b09f37a7-3a9a-4f98-873d-d53d6502a79b f6e0fd433f183b2c5f4abd187c53f2e3 { 'aliquot_tag': 'ALQ_92a61e0b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-02365.RNA-Seq.transcriptome.A.hg38 C3L-02365 LUAD RNA-Seq tissue_normal CPT0114880009 7ae6fc22-3cc3-435c-8c4f-a846e4c9f720.rna_seq.transcriptome.gdc_realn.bam 9741811435 BAM transcriptome harmonized CPTAC3 75cdef9c-30e0-419e-aa03-fbc70cde4914 859222acea9e5817cfc8bd963868fcc4 { 'aliquot_tag': 'ALQ_92a61e0b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02365.RNA-Seq.transcriptome.T.hg38 C3L-02365 LUAD RNA-Seq tumor CPT0114840006 6c3b2db1-8a86-422f-8567-1328345be457.rna_seq.transcriptome.gdc_realn.bam 10349407018 BAM transcriptome harmonized CPTAC3 0fae204d-5eba-4e8a-900a-618e4adafb05 b104640d5c759197f4cab76e46d0de49 { 'aliquot_tag': 'ALQ_c7e9ee9b', 'gdc_sample_type': 'Primary Tumor' } C3L-02365.WGS.A C3L-02365 LUAD WGS tissue_normal CPT0114880006 CPT0114880006.WholeGenome.RP-1303.bam 55743582468 BAM aligned CPTAC3 d6add0e5-4740-40c0-90d5-f76962a0c4eb 0c56eb89474a3529acc59f7996ab17b4 { 'aliquot_tag': 'ALQ_219039a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -10237,13 +10959,16 @@ C3L-02382.MethArray.Green.T C3L-02382 UCEC Methylation Array tumor CPT0190700011 C3L-02382.MethArray.Red.T C3L-02382 UCEC Methylation Array tumor CPT0190700011 203561620085_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 cc54843c-6724-4848-bc0c-03f8dd0985eb 23e967a8e66f09a15912391e6fcf6ce3 { 'aliquot_tag': 'ALQ_63ea61ca', 'gdc_sample_type': 'Primary Tumor' } C3L-02382.miRNA-Seq.T C3L-02382 UCEC miRNA-Seq tumor CPT0190700014 190508_UNC31-K00269_0215_BH7FYKBBXY_CTTGTA_S12_L001_R1_001.unaln.bam 282766675 BAM unaligned CPTAC3 c7d1995c-cc95-4c2e-b6a3-50a6f91cc8ec 879c0d4f2e2fd0565724ed6f7be6a735 { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor' } C3L-02382.miRNA-Seq.T.hg38 C3L-02382 UCEC miRNA-Seq tumor CPT0190700014 b7dd3171-6eb8-48ee-b10e-3674d257be2a_mirnaseq_gdc_realn.bam 316802278 BAM harmonized CPTAC3 ea4889a0-9dba-4078-8146-706ca322afe5 f2481ddc9a964e2e3459f882073e6822 { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor' } -C3L-02382.RNA-Seq.chimeric.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 b57e6892-f818-4695-8140-993692e99dfb.rna_seq.chimeric.gdc_realn.bam 30770082 BAM chimeric harmonized CPTAC3 e38c8565-c69c-490a-b911-2a4cf5ce65f3 ff86d8839401f0bfa56bdc25ece9aefb { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor' } -C3L-02382.RNA-Seq.genomic.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 b57e6892-f818-4695-8140-993692e99dfb.rna_seq.genomic.gdc_realn.bam 8284351224 BAM genomic harmonized CPTAC3 5c40861b-d865-4e3a-81aa-0bf600876611 6850ce4eed3cf8d66937892a97fef09c { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor' } -C3L-02382.RNA-Seq.R1_L005.T C3L-02382 UCEC RNA-Seq tumor CPT0190700014 190426_UNC32-K00270_0167_AH7CK7BBXY_CTCTCGTC-TATAACCT_S16_L005_R1_001.fastq.gz 3952812170 FASTQ R1_L005 unaligned CPTAC3 7594d19b-2b59-4ea9-a5a9-ccea3d390086 e521e7e934646ac700b6ae69541ec5f3 { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor' } -C3L-02382.RNA-Seq.R1_.T C3L-02382 UCEC RNA-Seq tumor CPT0190760001 20210729_P3_F4_WB7988-Plate3_S64_R1_001.fastq.gz 8767665783 FASTQ R1_ unaligned CPTAC3 14dd1167-b8b7-48f7-b145-df38c9aceb23 335827e52a086af58c15051535fdde60 { 'aliquot_tag': 'ALQ_f5b1a52b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02382.RNA-Seq.R2_L005.T C3L-02382 UCEC RNA-Seq tumor CPT0190700014 190426_UNC32-K00270_0167_AH7CK7BBXY_CTCTCGTC-TATAACCT_S16_L005_R2_001.fastq.gz 4546673484 FASTQ R2_L005 unaligned CPTAC3 73028a48-123b-458e-aa5f-025e9bc8f7da 95a097558122ac343fea0525e00cb0a6 { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor' } -C3L-02382.RNA-Seq.R2_.T C3L-02382 UCEC RNA-Seq tumor CPT0190760001 20210729_P3_F4_WB7988-Plate3_S64_R2_001.fastq.gz 9053086603 FASTQ R2_ unaligned CPTAC3 64e8f5a3-1cb1-4fb4-a1b2-e1bd00e4d449 a2b11403561bb662f6a4738f08e1fc10 { 'aliquot_tag': 'ALQ_f5b1a52b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02382.RNA-Seq.transcriptome.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 b57e6892-f818-4695-8140-993692e99dfb.rna_seq.transcriptome.gdc_realn.bam 9548321089 BAM transcriptome harmonized CPTAC3 f7852e14-c687-443d-baf5-d30e4955b6d9 91e762acd72f2c40f3b216037c331145 { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor' } +C3L-02382.RNA-Seq.chimeric.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 48d4cef5-ab98-46a4-86a9-d58580f235de.rna_seq.chimeric.gdc_realn.bam 30771439 BAM chimeric harmonized CPTAC3 0d0d9e95-68a1-4d97-92e9-1a70eaaa6c8e 504eec6b6e7eae4c4584139bd1464276 { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor' } +C3L-02382.RNA-Seq.chimeric.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190760001 56bb3321-d6d5-4cfe-a597-47b4f18aaf07.rna_seq.chimeric.gdc_realn.bam 237010281 BAM chimeric harmonized CPTAC3 a0ea0c8c-9a2c-46c3-9575-2b9be731ef95 23d03490905d3bbfa70effb5b8c0f821 { 'aliquot_tag': 'ALQ_f5b1a52b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02382.RNA-Seq.genomic.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 48d4cef5-ab98-46a4-86a9-d58580f235de.rna_seq.genomic.gdc_realn.bam 8285468783 BAM genomic harmonized CPTAC3 b8c373a4-1532-4087-a5dc-c52527e374d8 0ba42a578778093cea62df765b630b78 { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor' } +C3L-02382.RNA-Seq.genomic.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190760001 56bb3321-d6d5-4cfe-a597-47b4f18aaf07.rna_seq.genomic.gdc_realn.bam 12932715279 BAM genomic harmonized CPTAC3 69a77c5f-5626-4442-a39b-99492372fc86 bbf0a28b3032a7715960739b0cec9fa0 { 'aliquot_tag': 'ALQ_f5b1a52b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02382.RNA-Seq.R1_L005.T C3L-02382 UCEC RNA-Seq tumor CPT0190700014 190426_UNC32-K00270_0167_AH7CK7BBXY_CTCTCGTC-TATAACCT_S16_L005_R1_001.fastq.gz 3952812170 FASTQ R1_L005 unaligned CPTAC3 7594d19b-2b59-4ea9-a5a9-ccea3d390086 e521e7e934646ac700b6ae69541ec5f3 { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02382.RNA-Seq.R2_L005.T C3L-02382 UCEC RNA-Seq tumor CPT0190700014 190426_UNC32-K00270_0167_AH7CK7BBXY_CTCTCGTC-TATAACCT_S16_L005_R2_001.fastq.gz 4546673484 FASTQ R2_L005 unaligned CPTAC3 73028a48-123b-458e-aa5f-025e9bc8f7da 95a097558122ac343fea0525e00cb0a6 { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-02382.RNA-Seq.T C3L-02382 UCEC RNA-Seq tumor CPT0190760001 20210729_P3_F4_WB7988-Plate3_S64_R1_001.fastq.gz 8767665783 FASTQ unaligned CPTAC3 14dd1167-b8b7-48f7-b145-df38c9aceb23 335827e52a086af58c15051535fdde60 +C3L-02382.RNA-Seq.T C3L-02382 UCEC RNA-Seq tumor CPT0190760001 20210729_P3_F4_WB7988-Plate3_S64_R2_001.fastq.gz 9053086603 FASTQ unaligned CPTAC3 64e8f5a3-1cb1-4fb4-a1b2-e1bd00e4d449 a2b11403561bb662f6a4738f08e1fc10 +C3L-02382.RNA-Seq.transcriptome.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190700014 48d4cef5-ab98-46a4-86a9-d58580f235de.rna_seq.transcriptome.gdc_realn.bam 10988164918 BAM transcriptome harmonized CPTAC3 6f5e689e-ec21-49ce-949b-649008e99d81 9e802007f8febb0a41e738b9334c0648 { 'aliquot_tag': 'ALQ_13809545', 'gdc_sample_type': 'Primary Tumor' } +C3L-02382.RNA-Seq.transcriptome.T.hg38 C3L-02382 UCEC RNA-Seq tumor CPT0190760001 56bb3321-d6d5-4cfe-a597-47b4f18aaf07.rna_seq.transcriptome.gdc_realn.bam 8790830157 BAM transcriptome harmonized CPTAC3 90ef0355-feeb-4f88-aedd-22b9b93d95e0 e1b8a6a50b3b6e3d2cd51e59cc309c07 { 'aliquot_tag': 'ALQ_f5b1a52b', 'gdc_sample_type': 'Primary Tumor' } C3L-02382.WGS.N C3L-02382 UCEC WGS blood_normal CPT0191130002 CPT0191130002.WholeGenome.RP-1303.bam 54101923574 BAM aligned CPTAC3 120d369a-fa8c-402d-ad1d-e3adb52e7029 9de6cb3644029272e3301bd3ae8f7da4 { 'aliquot_tag': 'ALQ_d4769348', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02382.WGS.N.hg38 C3L-02382 UCEC WGS blood_normal CPT0191130002 bd1f3127-c66e-4b93-999b-c6f353153827_wgs_gdc_realn.bam 78735814802 BAM harmonized CPTAC3 7e14a55f-0c7f-48b1-9169-d4492763577c 6800894ee977d8051df5fad8915e962c { 'aliquot_tag': 'ALQ_d4769348', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02382.WGS.T C3L-02382 UCEC WGS tumor CPT0190700011 CPT0190700011.WholeGenome.RP-1303.bam 83527488477 BAM aligned CPTAC3 198aef96-fa03-4e05-9170-c88c235c80a7 2a546d5d0b74e8aba2da66a2a30fc0f2 { 'aliquot_tag': 'ALQ_63ea61ca', 'gdc_sample_type': 'Primary Tumor' } @@ -10256,13 +10981,16 @@ C3L-02384.MethArray.Green.T C3L-02384 UCEC Methylation Array tumor CPT0127980006 C3L-02384.MethArray.Red.T C3L-02384 UCEC Methylation Array tumor CPT0127980006 203027390091_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 e40cad2a-fdca-4a7d-83d2-2e56be15d6ac f3f63ed02889b8e7c93b01d0400fde92 { 'aliquot_tag': 'ALQ_7622cd41', 'gdc_sample_type': 'Primary Tumor' } C3L-02384.miRNA-Seq.T C3L-02384 UCEC miRNA-Seq tumor CPT0127980009 181108_UNC31-K00269_0162_AH255GBBXY_GATCAG_S33_L002_R1_001.unaln.bam 166767275 BAM unaligned CPTAC3 ed3df266-b020-48e1-91e9-836bb9564e47 eae52df44a29f40ac9d1d1ea4addd6bd { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor' } C3L-02384.miRNA-Seq.T.hg38 C3L-02384 UCEC miRNA-Seq tumor CPT0127980009 04d89c11-18ec-4171-bfb5-55576d987cc2_mirnaseq_gdc_realn.bam 186018585 BAM harmonized CPTAC3 af799cdf-4b8f-4f53-86f6-8638599b758f d5692b3aad366df2667e5a7f41e2cca0 { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02384.RNA-Seq.chimeric.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 84bc4a6c-c64d-4c77-8b77-a1f9271d3552.rna_seq.chimeric.gdc_realn.bam 62570990 BAM chimeric harmonized CPTAC3 a48d64f1-ff68-40f2-bd69-384162cfbc25 88c66db828a27a6d9b3a54030704d9cf { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02384.RNA-Seq.genomic.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 84bc4a6c-c64d-4c77-8b77-a1f9271d3552.rna_seq.genomic.gdc_realn.bam 8438443866 BAM genomic harmonized CPTAC3 17d2e23e-4dcc-44f2-8436-d5ff96b611c6 137e22045fb7e9cc9f15cf8ab4a7065d { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02384.RNA-Seq.R1_L003.T C3L-02384 UCEC RNA-Seq tumor CPT0127980009 180502_UNC32-K00270_0094_BHTVLMBBXX_GATCAG_S12_L003_R1_001.fastq.gz 3725621544 FASTQ R1_L003 unaligned CPTAC3 bdfbbbe6-04e0-4e78-8479-ef149f9f1f24 dfda243609a21e7c48f13a547ba67549 { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02384.RNA-Seq.R1_.T C3L-02384 UCEC RNA-Seq tumor CPT0128000001 20210723_P2_H7_WB7988-plate2_S91_R1_001.fastq.gz 2861677123 FASTQ R1_ unaligned CPTAC3 d8af1324-8bb2-46e3-bd40-5fca2817d841 dafc108e1893e09b9a34ed243247091a { 'aliquot_tag': 'ALQ_9713202', 'gdc_sample_type': 'Primary Tumor' } -C3L-02384.RNA-Seq.R2_L003.T C3L-02384 UCEC RNA-Seq tumor CPT0127980009 180502_UNC32-K00270_0094_BHTVLMBBXX_GATCAG_S12_L003_R2_001.fastq.gz 4020253681 FASTQ R2_L003 unaligned CPTAC3 7c24aefc-d4ad-4ee9-8525-7b13339c71f3 668e83ab8f083b0ab0ac95071a73ae3d { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02384.RNA-Seq.R2_.T C3L-02384 UCEC RNA-Seq tumor CPT0128000001 20210723_P2_H7_WB7988-plate2_S91_R2_001.fastq.gz 2917925766 FASTQ R2_ unaligned CPTAC3 f0fc043c-a81d-4393-9780-eeb93e4f6332 8ba8d9b44d1674553ec65b245a720495 { 'aliquot_tag': 'ALQ_9713202', 'gdc_sample_type': 'Primary Tumor' } -C3L-02384.RNA-Seq.transcriptome.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 84bc4a6c-c64d-4c77-8b77-a1f9271d3552.rna_seq.transcriptome.gdc_realn.bam 8473135722 BAM transcriptome harmonized CPTAC3 2e29d8cf-bb70-484c-be32-d790e19dbd31 c8f2d0714d5d25c72dc881863f769bda { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02384.RNA-Seq.chimeric.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 e5781b99-4e19-464e-a5ef-aa844409f7d1.rna_seq.chimeric.gdc_realn.bam 62557681 BAM chimeric harmonized CPTAC3 2d0293fb-6e78-49dc-a24d-61af0c31df0f 63b16a618512d8ff37e888a1e7b38e13 { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02384.RNA-Seq.chimeric.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0128000001 a24e1324-2af9-46a2-a399-1f90cab538c7.rna_seq.chimeric.gdc_realn.bam 116999519 BAM chimeric harmonized CPTAC3 74124573-4c49-4ab8-8a27-d2506aa6f38d 8ecc792a37e158cab6bfbb2c8aeff556 { 'aliquot_tag': 'ALQ_9713202', 'gdc_sample_type': 'Primary Tumor' } +C3L-02384.RNA-Seq.genomic.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 e5781b99-4e19-464e-a5ef-aa844409f7d1.rna_seq.genomic.gdc_realn.bam 8441176057 BAM genomic harmonized CPTAC3 d1e6783d-50da-47d7-bab4-1655911889da db7e7ca3f5a467cb66e83c9645c62ab0 { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02384.RNA-Seq.genomic.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0128000001 a24e1324-2af9-46a2-a399-1f90cab538c7.rna_seq.genomic.gdc_realn.bam 5326529720 BAM genomic harmonized CPTAC3 c6bcc09c-0966-49bc-9561-4871f47d8a1e 5859ffbc96945e1c9a529a1097f15b68 { 'aliquot_tag': 'ALQ_9713202', 'gdc_sample_type': 'Primary Tumor' } +C3L-02384.RNA-Seq.R1_L003.T C3L-02384 UCEC RNA-Seq tumor CPT0127980009 180502_UNC32-K00270_0094_BHTVLMBBXX_GATCAG_S12_L003_R1_001.fastq.gz 3725621544 FASTQ R1_L003 unaligned CPTAC3 bdfbbbe6-04e0-4e78-8479-ef149f9f1f24 dfda243609a21e7c48f13a547ba67549 { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02384.RNA-Seq.R2_L003.T C3L-02384 UCEC RNA-Seq tumor CPT0127980009 180502_UNC32-K00270_0094_BHTVLMBBXX_GATCAG_S12_L003_R2_001.fastq.gz 4020253681 FASTQ R2_L003 unaligned CPTAC3 7c24aefc-d4ad-4ee9-8525-7b13339c71f3 668e83ab8f083b0ab0ac95071a73ae3d { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02384.RNA-Seq.T C3L-02384 UCEC RNA-Seq tumor CPT0128000001 20210723_P2_H7_WB7988-plate2_S91_R1_001.fastq.gz 2861677123 FASTQ unaligned CPTAC3 d8af1324-8bb2-46e3-bd40-5fca2817d841 dafc108e1893e09b9a34ed243247091a +C3L-02384.RNA-Seq.T C3L-02384 UCEC RNA-Seq tumor CPT0128000001 20210723_P2_H7_WB7988-plate2_S91_R2_001.fastq.gz 2917925766 FASTQ unaligned CPTAC3 f0fc043c-a81d-4393-9780-eeb93e4f6332 8ba8d9b44d1674553ec65b245a720495 +C3L-02384.RNA-Seq.transcriptome.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0127980009 e5781b99-4e19-464e-a5ef-aa844409f7d1.rna_seq.transcriptome.gdc_realn.bam 9628658441 BAM transcriptome harmonized CPTAC3 9111b4c1-ebdc-4f0f-8c88-4f6c154bdb31 db049619da95f2b4c2d10b8df537fd9c { 'aliquot_tag': 'ALQ_e69dd0d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02384.RNA-Seq.transcriptome.T.hg38 C3L-02384 UCEC RNA-Seq tumor CPT0128000001 a24e1324-2af9-46a2-a399-1f90cab538c7.rna_seq.transcriptome.gdc_realn.bam 2386084925 BAM transcriptome harmonized CPTAC3 3c167622-d2b7-40da-a602-86837cbe5631 f36b41c3743909a101ade3fcf991e018 { 'aliquot_tag': 'ALQ_9713202', 'gdc_sample_type': 'Primary Tumor' } C3L-02384.WGS.N C3L-02384 UCEC WGS blood_normal CPT0128070002 CPT0128070002.WholeGenome.RP-1303.bam 65148791648 BAM aligned CPTAC3 9e277088-2781-43dc-9ac3-d19ab86a351e 252ffb0ef006b670d0fe13d2c56f2e95 { 'aliquot_tag': 'ALQ_2258bfa8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02384.WGS.N.hg38 C3L-02384 UCEC WGS blood_normal CPT0128070002 792b7e93-6bc8-44fa-a854-dbb0f3dda028_wgs_gdc_realn.bam 95396220753 BAM harmonized CPTAC3 400e122b-e3cd-4182-b102-890253b8025e ebb7bcf02816f47f6df542da1bb3db98 { 'aliquot_tag': 'ALQ_2258bfa8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02384.WGS.T C3L-02384 UCEC WGS tumor CPT0127980006 CPT0127980006.WholeGenome.RP-1303.bam 59029359103 BAM aligned CPTAC3 66156160-234c-4c13-91f0-dfee89f1b8a9 ba516f274a477224cb4030f844a93a12 { 'aliquot_tag': 'ALQ_7622cd41', 'gdc_sample_type': 'Primary Tumor' } @@ -10275,13 +11003,16 @@ C3L-02389.MethArray.Green.T C3L-02389 UCEC Methylation Array tumor CPT0203040011 C3L-02389.MethArray.Red.T C3L-02389 UCEC Methylation Array tumor CPT0203040011 203561620095_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 5460a05d-f51f-42cf-9f1a-14690bd67981 bdc18df3d5504381d02e8aa4a429bccb { 'aliquot_tag': 'ALQ_9c45cac1', 'gdc_sample_type': 'Primary Tumor' } C3L-02389.miRNA-Seq.T C3L-02389 UCEC miRNA-Seq tumor CPT0203040014 190508_UNC31-K00269_0215_BH7FYKBBXY_CTTGTA_S12_L003_R1_001.unaln.bam 224519411 BAM unaligned CPTAC3 b31f4018-7b95-4b8f-9757-6db5d67a526c e1eb27dfee08f4b9141a53b5aaab2e4d { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor' } C3L-02389.miRNA-Seq.T.hg38 C3L-02389 UCEC miRNA-Seq tumor CPT0203040014 8931bc71-26ff-46ba-9a69-2584634bd34f_mirnaseq_gdc_realn.bam 259332228 BAM harmonized CPTAC3 d310888b-bfa0-49e4-aca4-b049ae4bcd47 4e673b5f500a8a7b5253ae843152775c { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02389.RNA-Seq.chimeric.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 694eddca-efc8-41c3-8c25-439c94e05f6a.rna_seq.chimeric.gdc_realn.bam 33610980 BAM chimeric harmonized CPTAC3 633ee81d-9d5b-47a9-98b5-6ab70ed0626c b59ffa88bb2863cbcefac63d1ff4544d { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02389.RNA-Seq.genomic.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 694eddca-efc8-41c3-8c25-439c94e05f6a.rna_seq.genomic.gdc_realn.bam 8038161699 BAM genomic harmonized CPTAC3 029bc826-6cb5-4c44-930c-859e18400382 77293bba36e1cb7f865420a9eaac8141 { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02389.RNA-Seq.R1_L008.T C3L-02389 UCEC RNA-Seq tumor CPT0203040014 190523_UNC32-K00270_0176_BH7CW7BBXY_AGCTCGCT-GCAGAATC_S32_L008_R1_001.fastq.gz 3891701366 FASTQ R1_L008 unaligned CPTAC3 0a6a3cf3-5b8d-4120-9c9c-00967b9657cd a2b7ac7236e5a1036669e94573603b39 { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02389.RNA-Seq.R1_.T C3L-02389 UCEC RNA-Seq tumor CPT0203060001 20210714_P1_F4_WB7988_plate1_S64_R1_001.fastq.gz 5043750880 FASTQ R1_ unaligned CPTAC3 7d635c2f-0eb6-4678-adf9-5dac2bee265c b7582ceaf21844bca6b116871c946ef5 { 'aliquot_tag': 'ALQ_ff9ea8e0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02389.RNA-Seq.R2_L008.T C3L-02389 UCEC RNA-Seq tumor CPT0203040014 190523_UNC32-K00270_0176_BH7CW7BBXY_AGCTCGCT-GCAGAATC_S32_L008_R2_001.fastq.gz 4413028877 FASTQ R2_L008 unaligned CPTAC3 93f35bdd-dd49-4781-90cb-c27fc986b796 527493946f2e74606b920edaeda25615 { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02389.RNA-Seq.R2_.T C3L-02389 UCEC RNA-Seq tumor CPT0203060001 20210714_P1_F4_WB7988_plate1_S64_R2_001.fastq.gz 5159183647 FASTQ R2_ unaligned CPTAC3 bf456a4a-e97a-48a6-9275-d470e31224da 0168c1887f2b569ebfea5ad21b94194c { 'aliquot_tag': 'ALQ_ff9ea8e0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02389.RNA-Seq.transcriptome.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 694eddca-efc8-41c3-8c25-439c94e05f6a.rna_seq.transcriptome.gdc_realn.bam 10461605527 BAM transcriptome harmonized CPTAC3 6dd9a153-9724-41cc-8ee1-e4c78d2a9f56 481b59a78ebfb67e5f6588af0cbf034b { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02389.RNA-Seq.chimeric.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 d6012838-1f1b-4071-9077-7c0cdfa6a21a.rna_seq.chimeric.gdc_realn.bam 33600832 BAM chimeric harmonized CPTAC3 177bd8ed-b12a-42fb-9930-a924374f6d88 32bada291b61d54c4c9a500eeb3cc608 { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02389.RNA-Seq.chimeric.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203060001 6cdaeedc-6812-4162-9717-d94f2fda5441.rna_seq.chimeric.gdc_realn.bam 105359826 BAM chimeric harmonized CPTAC3 71b16b63-d16f-498c-9a65-a3b47ff668f0 0250b22d60e6e838f18f25a72b7da3fb { 'aliquot_tag': 'ALQ_ff9ea8e0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02389.RNA-Seq.genomic.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 d6012838-1f1b-4071-9077-7c0cdfa6a21a.rna_seq.genomic.gdc_realn.bam 8039571121 BAM genomic harmonized CPTAC3 28516c3e-6b11-4c9e-ab00-ec4d6f6c328a 4a2effff2f6395115c3d615fa65912e1 { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02389.RNA-Seq.genomic.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203060001 6cdaeedc-6812-4162-9717-d94f2fda5441.rna_seq.genomic.gdc_realn.bam 6879574423 BAM genomic harmonized CPTAC3 8f65b959-8297-463c-b835-4dde2863cf06 7ef48e9a6e8b53e4f01c3bc7d66bde32 { 'aliquot_tag': 'ALQ_ff9ea8e0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02389.RNA-Seq.R1_L008.T C3L-02389 UCEC RNA-Seq tumor CPT0203040014 190523_UNC32-K00270_0176_BH7CW7BBXY_AGCTCGCT-GCAGAATC_S32_L008_R1_001.fastq.gz 3891701366 FASTQ R1_L008 unaligned CPTAC3 0a6a3cf3-5b8d-4120-9c9c-00967b9657cd a2b7ac7236e5a1036669e94573603b39 { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02389.RNA-Seq.R2_L008.T C3L-02389 UCEC RNA-Seq tumor CPT0203040014 190523_UNC32-K00270_0176_BH7CW7BBXY_AGCTCGCT-GCAGAATC_S32_L008_R2_001.fastq.gz 4413028877 FASTQ R2_L008 unaligned CPTAC3 93f35bdd-dd49-4781-90cb-c27fc986b796 527493946f2e74606b920edaeda25615 { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-02389.RNA-Seq.T C3L-02389 UCEC RNA-Seq tumor CPT0203060001 20210714_P1_F4_WB7988_plate1_S64_R1_001.fastq.gz 5043750880 FASTQ unaligned CPTAC3 7d635c2f-0eb6-4678-adf9-5dac2bee265c b7582ceaf21844bca6b116871c946ef5 +C3L-02389.RNA-Seq.T C3L-02389 UCEC RNA-Seq tumor CPT0203060001 20210714_P1_F4_WB7988_plate1_S64_R2_001.fastq.gz 5159183647 FASTQ unaligned CPTAC3 bf456a4a-e97a-48a6-9275-d470e31224da 0168c1887f2b569ebfea5ad21b94194c +C3L-02389.RNA-Seq.transcriptome.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203040014 d6012838-1f1b-4071-9077-7c0cdfa6a21a.rna_seq.transcriptome.gdc_realn.bam 12099997474 BAM transcriptome harmonized CPTAC3 133339ae-5426-4928-bea4-f4793c6ae8eb e60d89afa0cf0928c1ee6de62723aeca { 'aliquot_tag': 'ALQ_ec2f3e4e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02389.RNA-Seq.transcriptome.T.hg38 C3L-02389 UCEC RNA-Seq tumor CPT0203060001 6cdaeedc-6812-4162-9717-d94f2fda5441.rna_seq.transcriptome.gdc_realn.bam 4694010963 BAM transcriptome harmonized CPTAC3 88bb095f-f5e9-4394-98f7-29344092c757 0c93c357349263c9e71c71dca6ea09c6 { 'aliquot_tag': 'ALQ_ff9ea8e0', 'gdc_sample_type': 'Primary Tumor' } C3L-02389.WGS.N C3L-02389 UCEC WGS blood_normal CPT0203130002 CPT0203130002.WholeGenome.RP-1303.bam 76417288871 BAM aligned CPTAC3 b3099cef-6986-468f-b8a2-bfb1f4a6db59 d90815744eaedb5779e38729ac84b3d9 { 'aliquot_tag': 'ALQ_652ba58f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02389.WGS.N.hg38 C3L-02389 UCEC WGS blood_normal CPT0203130002 9a7657a7-f7d0-4df9-bd1a-fe708f683f78_wgs_gdc_realn.bam 110533470294 BAM harmonized CPTAC3 cbf88027-f2f7-41f6-954e-dac3b7e73e16 dd4236605ffd3ba38a2e99c9cf3c61fc { 'aliquot_tag': 'ALQ_652ba58f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02389.WGS.T C3L-02389 UCEC WGS tumor CPT0203040011 CPT0203040011.WholeGenome.RP-1303.bam 57890905829 BAM aligned CPTAC3 472ceb8a-cffb-4f8f-9e66-29bd453b5564 81b3476f1b86ac3b7c1a911a99f2a3a6 { 'aliquot_tag': 'ALQ_9c45cac1', 'gdc_sample_type': 'Primary Tumor' } @@ -10294,15 +11025,21 @@ C3L-02392.MethArray.Green.T C3L-02392 UCEC Methylation Array tumor CPT0203250011 C3L-02392.MethArray.Red.T C3L-02392 UCEC Methylation Array tumor CPT0203250011 203561620050_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 66ea3b62-44bd-49cd-90db-5668ac564f48 ab2be831f6b209103ee77c5e1d83a995 { 'aliquot_tag': 'ALQ_eced427a', 'gdc_sample_type': 'Primary Tumor' } C3L-02392.miRNA-Seq.T C3L-02392 UCEC miRNA-Seq tumor CPT0203250014 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTTCC_S14_L003_R1_001.unaln.bam 306285615 BAM unaligned CPTAC3 d5b2a374-1951-4b68-90d2-8cec94de1de5 d8fc2307779a3b41c6ec78a71be5cdbe { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor' } C3L-02392.miRNA-Seq.T.hg38 C3L-02392 UCEC miRNA-Seq tumor CPT0203250014 98f63f77-f21e-4d66-a55d-1db0c2d62644_mirnaseq_gdc_realn.bam 348073174 BAM harmonized CPTAC3 a8d45753-8d97-428e-a33f-82370c958e19 e7d96324531e20f06e144a8068b82520 { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02392.RNA-Seq.chimeric.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 7eb2ed3e-a3d4-4e7b-8db2-0aa57dd6bc21.rna_seq.chimeric.gdc_realn.bam 39600581 BAM chimeric harmonized CPTAC3 d50b9165-813a-4cee-aad4-b15dca480530 4df753931cc2c01b99ddafc2d9ce0a4a { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02392.RNA-Seq.genomic.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 7eb2ed3e-a3d4-4e7b-8db2-0aa57dd6bc21.rna_seq.genomic.gdc_realn.bam 8435109470 BAM genomic harmonized CPTAC3 bef2d511-3073-4d2d-87ff-10bdda9458f9 f8267d150929f046db60e26db6411fc5 { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02392.RNA-Seq.R1_L007.T C3L-02392 UCEC RNA-Seq tumor CPT0203250014 190523_UNC32-K00270_0176_BH7CW7BBXY_TAAGGTCA-TGTCGTAG_S26_L007_R1_001.fastq.gz 3976832811 FASTQ R1_L007 unaligned CPTAC3 f602bb01-0d6a-49cb-a77c-1e571dd92e7f 7df3351043735cb1a6c6b2efb9fd419d { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02392.RNA-Seq.R1_.T C3L-02392 UCEC RNA-Seq tumor CPT0203270001 20210714_P1_H1_WB7988_plate1_S84_R1_001.fastq.gz 4227738116 FASTQ R1_ unaligned CPTAC3 8a02a875-b2b5-4678-936a-7b4790b44630 8d1f3d9d723a8d6a7226f40daa37c656 { 'aliquot_tag': 'ALQ_8f36205b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02392.RNA-Seq.R1_.T C3L-02392 UCEC RNA-Seq tumor CPT0203270003 20210729_P3_E11_WB7988-Plate3_S59_R1_001.fastq.gz 10612461282 FASTQ R1_ unaligned CPTAC3 549723fd-6176-4acf-9351-7cbd8f12b82a 337e4472a9b66db047c4730a12f6d177 { 'aliquot_tag': 'ALQ_61384177', 'gdc_sample_type': 'Primary Tumor' } -C3L-02392.RNA-Seq.R2_L007.T C3L-02392 UCEC RNA-Seq tumor CPT0203250014 190523_UNC32-K00270_0176_BH7CW7BBXY_TAAGGTCA-TGTCGTAG_S26_L007_R2_001.fastq.gz 4540670866 FASTQ R2_L007 unaligned CPTAC3 d2edd54a-21a9-45e2-8800-544e1da013d2 f38a453a50bf2a27582c66ec435d9fe3 { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02392.RNA-Seq.R2_.T C3L-02392 UCEC RNA-Seq tumor CPT0203270001 20210714_P1_H1_WB7988_plate1_S84_R2_001.fastq.gz 4428759113 FASTQ R2_ unaligned CPTAC3 45263705-c7ff-429a-ba1b-3b47c0249872 12f48b0c6c46b24104cd48b64586e298 { 'aliquot_tag': 'ALQ_8f36205b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02392.RNA-Seq.R2_.T C3L-02392 UCEC RNA-Seq tumor CPT0203270003 20210729_P3_E11_WB7988-Plate3_S59_R2_001.fastq.gz 10915270082 FASTQ R2_ unaligned CPTAC3 e91b958f-36e1-42c7-9975-45e8931ae219 fe3accca0a7add31a5dac1bd83e290ff { 'aliquot_tag': 'ALQ_61384177', 'gdc_sample_type': 'Primary Tumor' } -C3L-02392.RNA-Seq.transcriptome.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 7eb2ed3e-a3d4-4e7b-8db2-0aa57dd6bc21.rna_seq.transcriptome.gdc_realn.bam 9860771700 BAM transcriptome harmonized CPTAC3 9184683f-75a1-4d2b-8b8d-c4b10c0ae172 3b9615872376b45c0714a946d4c25b5f { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02392.RNA-Seq.chimeric.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 0963cdeb-f9d2-4713-a54a-9897961cad4c.rna_seq.chimeric.gdc_realn.bam 39585498 BAM chimeric harmonized CPTAC3 d6706fa6-602a-4820-b817-b6eb70f69d49 42e7a42d56b6a30552c3a1d47435d749 { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02392.RNA-Seq.chimeric.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270001 4d6ea3e3-3d30-46b4-9306-d3add4023b74.rna_seq.chimeric.gdc_realn.bam 124798421 BAM chimeric harmonized CPTAC3 ebd847fb-7d54-4c8a-91a3-89c12112f796 f036a5e3a8a7b5c265855dcbd70030e6 { 'aliquot_tag': 'ALQ_8f36205b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02392.RNA-Seq.chimeric.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270003 6e674bcf-1f79-40c5-972e-f9d3f4bce889.rna_seq.chimeric.gdc_realn.bam 294232459 BAM chimeric harmonized CPTAC3 6c77496c-de04-44b4-88c6-f385f394996d 64c80439f885a3af785c0e278db2e8ba { 'aliquot_tag': 'ALQ_61384177', 'gdc_sample_type': 'Primary Tumor' } +C3L-02392.RNA-Seq.genomic.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 0963cdeb-f9d2-4713-a54a-9897961cad4c.rna_seq.genomic.gdc_realn.bam 8436125787 BAM genomic harmonized CPTAC3 2ec72315-c4c3-49e1-aa01-01308e4bec5f afce05edd52aae0e8f137cb229cb5c3d { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02392.RNA-Seq.genomic.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270001 4d6ea3e3-3d30-46b4-9306-d3add4023b74.rna_seq.genomic.gdc_realn.bam 6929352791 BAM genomic harmonized CPTAC3 54fc1b37-4fa0-4cb6-a60f-107698542b46 4a909a90a9c51e242092b3579145d68a { 'aliquot_tag': 'ALQ_8f36205b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02392.RNA-Seq.genomic.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270003 6e674bcf-1f79-40c5-972e-f9d3f4bce889.rna_seq.genomic.gdc_realn.bam 13609938970 BAM genomic harmonized CPTAC3 de68cd72-2ac6-41af-9eb3-28569f3e10f3 c53a0e793e002b66ef5ab35e98698ada { 'aliquot_tag': 'ALQ_61384177', 'gdc_sample_type': 'Primary Tumor' } +C3L-02392.RNA-Seq.R1_L007.T C3L-02392 UCEC RNA-Seq tumor CPT0203250014 190523_UNC32-K00270_0176_BH7CW7BBXY_TAAGGTCA-TGTCGTAG_S26_L007_R1_001.fastq.gz 3976832811 FASTQ R1_L007 unaligned CPTAC3 f602bb01-0d6a-49cb-a77c-1e571dd92e7f 7df3351043735cb1a6c6b2efb9fd419d { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02392.RNA-Seq.R2_L007.T C3L-02392 UCEC RNA-Seq tumor CPT0203250014 190523_UNC32-K00270_0176_BH7CW7BBXY_TAAGGTCA-TGTCGTAG_S26_L007_R2_001.fastq.gz 4540670866 FASTQ R2_L007 unaligned CPTAC3 d2edd54a-21a9-45e2-8800-544e1da013d2 f38a453a50bf2a27582c66ec435d9fe3 { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02392.RNA-Seq.T C3L-02392 UCEC RNA-Seq tumor CPT0203270001 20210714_P1_H1_WB7988_plate1_S84_R1_001.fastq.gz 4227738116 FASTQ unaligned CPTAC3 8a02a875-b2b5-4678-936a-7b4790b44630 8d1f3d9d723a8d6a7226f40daa37c656 +C3L-02392.RNA-Seq.T C3L-02392 UCEC RNA-Seq tumor CPT0203270001 20210714_P1_H1_WB7988_plate1_S84_R2_001.fastq.gz 4428759113 FASTQ unaligned CPTAC3 45263705-c7ff-429a-ba1b-3b47c0249872 12f48b0c6c46b24104cd48b64586e298 +C3L-02392.RNA-Seq.T C3L-02392 UCEC RNA-Seq tumor CPT0203270003 20210729_P3_E11_WB7988-Plate3_S59_R1_001.fastq.gz 10612461282 FASTQ unaligned CPTAC3 549723fd-6176-4acf-9351-7cbd8f12b82a 337e4472a9b66db047c4730a12f6d177 +C3L-02392.RNA-Seq.T C3L-02392 UCEC RNA-Seq tumor CPT0203270003 20210729_P3_E11_WB7988-Plate3_S59_R2_001.fastq.gz 10915270082 FASTQ unaligned CPTAC3 e91b958f-36e1-42c7-9975-45e8931ae219 fe3accca0a7add31a5dac1bd83e290ff +C3L-02392.RNA-Seq.transcriptome.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203250014 0963cdeb-f9d2-4713-a54a-9897961cad4c.rna_seq.transcriptome.gdc_realn.bam 11385858289 BAM transcriptome harmonized CPTAC3 77e0e791-bbe5-480c-9596-5102172d7570 e4b5d790efbda652f1c8fde1264331c6 { 'aliquot_tag': 'ALQ_9c87b6f5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02392.RNA-Seq.transcriptome.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270001 4d6ea3e3-3d30-46b4-9306-d3add4023b74.rna_seq.transcriptome.gdc_realn.bam 4004495471 BAM transcriptome harmonized CPTAC3 be27f16f-d9d4-4fc6-b311-1d766070da12 eae15bd7e365882b12900ac5137c6161 { 'aliquot_tag': 'ALQ_8f36205b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02392.RNA-Seq.transcriptome.T.hg38 C3L-02392 UCEC RNA-Seq tumor CPT0203270003 6e674bcf-1f79-40c5-972e-f9d3f4bce889.rna_seq.transcriptome.gdc_realn.bam 9817117083 BAM transcriptome harmonized CPTAC3 0f1b3be9-794b-42e3-a96d-5a97ff038258 cd33d4097f47df62330f79672596143b { 'aliquot_tag': 'ALQ_61384177', 'gdc_sample_type': 'Primary Tumor' } C3L-02392.WGS.N C3L-02392 UCEC WGS blood_normal CPT0203310002 CPT0203310002.WholeGenome.RP-1303.bam 73986187364 BAM aligned CPTAC3 0fec6ec2-a474-4088-a9c6-26f8d36fcdbd f343762118285683c7b2470ea51bd06b { 'aliquot_tag': 'ALQ_522357e4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02392.WGS.N.hg38 C3L-02392 UCEC WGS blood_normal CPT0203310002 ebccbb2e-028d-40f4-8880-6dd3967edde8_wgs_gdc_realn.bam 107766832826 BAM harmonized CPTAC3 82831af9-d6ec-4673-8440-5cf41005227a de7df6ccd37ea45f0ba58b725fed2770 { 'aliquot_tag': 'ALQ_522357e4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02392.WGS.T C3L-02392 UCEC WGS tumor CPT0203250011 CPT0203250011.WholeGenome.RP-1303.bam 80150789306 BAM aligned CPTAC3 143f0cc4-2c83-4fc3-8de0-c263ad3228f4 61311157786296a7c87c4f1739960556 { 'aliquot_tag': 'ALQ_eced427a', 'gdc_sample_type': 'Primary Tumor' } @@ -10315,13 +11052,16 @@ C3L-02395.MethArray.Green.T C3L-02395 UCEC Methylation Array tumor CPT0128080006 C3L-02395.MethArray.Red.T C3L-02395 UCEC Methylation Array tumor CPT0128080006 203219670106_R01C01_Red.idat 13676241 IDAT Red NA CPTAC3 5fe79bbe-f9dc-4177-91b5-149dd8eacb7e 8147494086163c437bae731aacb5ad9d { 'aliquot_tag': 'ALQ_a765ec60', 'gdc_sample_type': 'Primary Tumor' } C3L-02395.miRNA-Seq.T C3L-02395 UCEC miRNA-Seq tumor CPT0128080009 181108_UNC31-K00269_0162_AH255GBBXY_ATGTCA_S39_L002_R1_001.unaln.bam 318814920 BAM unaligned CPTAC3 8b53fc32-0ed2-45f5-b53f-1027e3383066 2325ab3fa630347199f88779cd35aa8c { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor' } C3L-02395.miRNA-Seq.T.hg38 C3L-02395 UCEC miRNA-Seq tumor CPT0128080009 475c7dbf-1d2a-4bef-b70f-ba0c2ac1b536_mirnaseq_gdc_realn.bam 360959277 BAM harmonized CPTAC3 626edd29-b44f-4b49-830d-98bcdd488a16 e5b1838722cecebf01eef4dac8360b35 { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02395.RNA-Seq.chimeric.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 e224dcb7-5271-445d-be3b-9b260b990ad1.rna_seq.chimeric.gdc_realn.bam 104176719 BAM chimeric harmonized CPTAC3 fc6b4e34-3aa3-4eac-9c66-ea158be54e64 0cdfcb7507fb818c9cac79d62f9d81fc { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02395.RNA-Seq.genomic.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 e224dcb7-5271-445d-be3b-9b260b990ad1.rna_seq.genomic.gdc_realn.bam 9272910864 BAM genomic harmonized CPTAC3 acd6c811-eccc-476c-af06-ebec46410f18 8a2fd90bb37b02ffb2970f95162dd4d6 { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02395.RNA-Seq.R1_L001.T C3L-02395 UCEC RNA-Seq tumor CPT0128080009 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L001_R1_001.fastq.gz 4075314808 FASTQ R1_L001 unaligned CPTAC3 8c397a94-8db3-4dfa-b835-89d7a2222100 3583ad79ae2268aef2173bc54cd9928c { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02395.RNA-Seq.R1_.T C3L-02395 UCEC RNA-Seq tumor CPT0128090001 20210723_P2_G5_WB7988-plate2_S77_R1_001.fastq.gz 6758181511 FASTQ R1_ unaligned CPTAC3 157112b7-746c-4647-b4e6-f4607ce1518d e890f59a04fa43d1d323b629d4035e9a { 'aliquot_tag': 'ALQ_4615073', 'gdc_sample_type': 'Primary Tumor' } -C3L-02395.RNA-Seq.R2_L001.T C3L-02395 UCEC RNA-Seq tumor CPT0128080009 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L001_R2_001.fastq.gz 4378812266 FASTQ R2_L001 unaligned CPTAC3 182ef355-f6af-4b1f-b04b-caeab03bc32a 5067ba6ea9d033dcabe20dd3e23262c2 { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02395.RNA-Seq.R2_.T C3L-02395 UCEC RNA-Seq tumor CPT0128090001 20210723_P2_G5_WB7988-plate2_S77_R2_001.fastq.gz 6923704250 FASTQ R2_ unaligned CPTAC3 8f69879b-68a1-45d0-88af-b415dd5148bd b426d4831bfd598d4f225fb3c149569f { 'aliquot_tag': 'ALQ_4615073', 'gdc_sample_type': 'Primary Tumor' } -C3L-02395.RNA-Seq.transcriptome.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 e224dcb7-5271-445d-be3b-9b260b990ad1.rna_seq.transcriptome.gdc_realn.bam 9136968728 BAM transcriptome harmonized CPTAC3 2b3d26ba-0843-48f6-83c1-34ddf6e2459a c245225861cb2270cfb55586858982a9 { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02395.RNA-Seq.chimeric.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 44cb67e6-970e-45e6-a5b8-d828cc82c4b0.rna_seq.chimeric.gdc_realn.bam 104139959 BAM chimeric harmonized CPTAC3 e9ece0ea-ab1b-44ab-96c6-03e0b6705ed7 07901427d872f28d4be30277d32e7fcf { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02395.RNA-Seq.chimeric.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128090001 ed04c417-be8b-40ac-a849-109d1274d6f6.rna_seq.chimeric.gdc_realn.bam 292196655 BAM chimeric harmonized CPTAC3 08c504cb-e102-4090-b75e-918d1edc7452 34ab50829340ee749a8a7510b5443aa8 { 'aliquot_tag': 'ALQ_4615073', 'gdc_sample_type': 'Primary Tumor' } +C3L-02395.RNA-Seq.genomic.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 44cb67e6-970e-45e6-a5b8-d828cc82c4b0.rna_seq.genomic.gdc_realn.bam 9273609301 BAM genomic harmonized CPTAC3 58185e0c-ee16-4dcf-8c7d-98280b19f2d6 e5bc2957f0510924f183ebd5622b7e45 { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02395.RNA-Seq.genomic.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128090001 ed04c417-be8b-40ac-a849-109d1274d6f6.rna_seq.genomic.gdc_realn.bam 11489401406 BAM genomic harmonized CPTAC3 1cb25c23-95ea-4f79-b199-7abc32c21046 022d88a9ca7bb587559a0024cb281340 { 'aliquot_tag': 'ALQ_4615073', 'gdc_sample_type': 'Primary Tumor' } +C3L-02395.RNA-Seq.R1_L001.T C3L-02395 UCEC RNA-Seq tumor CPT0128080009 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L001_R1_001.fastq.gz 4075314808 FASTQ R1_L001 unaligned CPTAC3 8c397a94-8db3-4dfa-b835-89d7a2222100 3583ad79ae2268aef2173bc54cd9928c { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02395.RNA-Seq.R2_L001.T C3L-02395 UCEC RNA-Seq tumor CPT0128080009 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L001_R2_001.fastq.gz 4378812266 FASTQ R2_L001 unaligned CPTAC3 182ef355-f6af-4b1f-b04b-caeab03bc32a 5067ba6ea9d033dcabe20dd3e23262c2 { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02395.RNA-Seq.T C3L-02395 UCEC RNA-Seq tumor CPT0128090001 20210723_P2_G5_WB7988-plate2_S77_R1_001.fastq.gz 6758181511 FASTQ unaligned CPTAC3 157112b7-746c-4647-b4e6-f4607ce1518d e890f59a04fa43d1d323b629d4035e9a +C3L-02395.RNA-Seq.T C3L-02395 UCEC RNA-Seq tumor CPT0128090001 20210723_P2_G5_WB7988-plate2_S77_R2_001.fastq.gz 6923704250 FASTQ unaligned CPTAC3 8f69879b-68a1-45d0-88af-b415dd5148bd b426d4831bfd598d4f225fb3c149569f +C3L-02395.RNA-Seq.transcriptome.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128080009 44cb67e6-970e-45e6-a5b8-d828cc82c4b0.rna_seq.transcriptome.gdc_realn.bam 10503120352 BAM transcriptome harmonized CPTAC3 105ab7e7-dc9b-427c-a7de-349749cd2ef2 952fb5fca4df1aad1fcccf813b5be9fa { 'aliquot_tag': 'ALQ_37daf1f1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02395.RNA-Seq.transcriptome.T.hg38 C3L-02395 UCEC RNA-Seq tumor CPT0128090001 ed04c417-be8b-40ac-a849-109d1274d6f6.rna_seq.transcriptome.gdc_realn.bam 7326396859 BAM transcriptome harmonized CPTAC3 7e36063a-0967-492c-9456-98cbf1c14370 ee36e2e0c3bf23dab0e6f9101a8a41a9 { 'aliquot_tag': 'ALQ_4615073', 'gdc_sample_type': 'Primary Tumor' } C3L-02395.WGS.N C3L-02395 UCEC WGS blood_normal CPT0128130002 CPT0128130002.WholeGenome.RP-1303.bam 56471729280 BAM aligned CPTAC3 f449d5f8-1089-4e62-be78-9cbb536df35f 216d4747224edf0d3a50c12ca2dc50b9 { 'aliquot_tag': 'ALQ_1c84cacd', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02395.WGS.N.hg38 C3L-02395 UCEC WGS blood_normal CPT0128130002 853593c3-09dc-4248-8661-55e1babe4789_wgs_gdc_realn.bam 82034365435 BAM harmonized CPTAC3 69c6d886-813e-4eab-8c49-96c206af8d9e 9793c0a23b7d2d18f03b94b899cf5e67 { 'aliquot_tag': 'ALQ_1c84cacd', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02395.WGS.T C3L-02395 UCEC WGS tumor CPT0128080006 CPT0128080006.WholeGenome.RP-1303.bam 54605121368 BAM aligned CPTAC3 ec2988ee-5692-485e-96a5-691be6001592 cefbd64edc1602445ea4206069927eeb { 'aliquot_tag': 'ALQ_a765ec60', 'gdc_sample_type': 'Primary Tumor' } @@ -10334,13 +11074,16 @@ C3L-02399.MethArray.Green.T C3L-02399 UCEC Methylation Array tumor CPT0171090011 C3L-02399.MethArray.Red.T C3L-02399 UCEC Methylation Array tumor CPT0171090011 203561620086_R07C01_Red.idat 13676236 IDAT Red NA CPTAC3 25109a5d-a460-4e65-8c7c-2a85896d3523 62f907aea40f374e4ef715f9d01772ff { 'aliquot_tag': 'ALQ_c0022a85', 'gdc_sample_type': 'Primary Tumor' } C3L-02399.miRNA-Seq.T C3L-02399 UCEC miRNA-Seq tumor CPT0171090014 190508_UNC31-K00269_0215_BH7FYKBBXY_GCCAAT_S6_L003_R1_001.unaln.bam 288860503 BAM unaligned CPTAC3 8d3a0cdd-a3df-4fbc-93fc-f4b17d1d46b4 3fcefb5fb9774cb2d523bdd4c985a46b { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor' } C3L-02399.miRNA-Seq.T.hg38 C3L-02399 UCEC miRNA-Seq tumor CPT0171090014 805d2ed6-d90b-4ee1-a095-866c1c3ef389_mirnaseq_gdc_realn.bam 327347579 BAM harmonized CPTAC3 cc6a851c-8674-4227-8730-c609358edb58 df0c1304a9659dbdc4678fda3b9d53a6 { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02399.RNA-Seq.chimeric.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 0df0bd14-4e2e-453d-9571-a7cfbd562b67.rna_seq.chimeric.gdc_realn.bam 40121017 BAM chimeric harmonized CPTAC3 8d48eb14-7fc8-483f-b342-ad098d556fb4 12fc32b742cf50937731c2cd20a6ee7a { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02399.RNA-Seq.genomic.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 0df0bd14-4e2e-453d-9571-a7cfbd562b67.rna_seq.genomic.gdc_realn.bam 9391816691 BAM genomic harmonized CPTAC3 b73689e4-a5b5-428d-9de3-6b7900938240 46a51218aa5a2f3029a0ba3dc9e61e0a { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02399.RNA-Seq.R1_L001.T C3L-02399 UCEC RNA-Seq tumor CPT0171090014 190604_UNC32-K00270_0177_AH7F5VBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R1_001.fastq.gz 4398111754 FASTQ R1_L001 unaligned CPTAC3 7308da99-6002-4e45-aeb6-6fd5a77acbf2 a4b52a688c4f8dcfa3d7eff0332e56a8 { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02399.RNA-Seq.R1_.T C3L-02399 UCEC RNA-Seq tumor CPT0171100001 20210714_P1_C8_WB7988_plate1_S32_R1_001.fastq.gz 3816611577 FASTQ R1_ unaligned CPTAC3 51161131-c337-4e75-b7e5-544711e49b17 2a8aa5fca7f09f4e58392e1d76b46727 { 'aliquot_tag': 'ALQ_1f55aa10', 'gdc_sample_type': 'Primary Tumor' } -C3L-02399.RNA-Seq.R2_L001.T C3L-02399 UCEC RNA-Seq tumor CPT0171090014 190604_UNC32-K00270_0177_AH7F5VBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R2_001.fastq.gz 5135156175 FASTQ R2_L001 unaligned CPTAC3 927d6c15-eca7-4fe6-ae1a-5477fd5e0a3e be70974896a6cd2dbdaa6e686ce6fefd { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02399.RNA-Seq.R2_.T C3L-02399 UCEC RNA-Seq tumor CPT0171100001 20210714_P1_C8_WB7988_plate1_S32_R2_001.fastq.gz 3996686135 FASTQ R2_ unaligned CPTAC3 09f885ed-ce46-46c6-9e65-0539ce371540 98074fc92adf2a505f151156b1d03042 { 'aliquot_tag': 'ALQ_1f55aa10', 'gdc_sample_type': 'Primary Tumor' } -C3L-02399.RNA-Seq.transcriptome.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 0df0bd14-4e2e-453d-9571-a7cfbd562b67.rna_seq.transcriptome.gdc_realn.bam 7841382628 BAM transcriptome harmonized CPTAC3 4589c36f-d263-4ffa-ae31-aa6b44afe23e db33f1bbc1fc0bca3d57ef3efaa70629 { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02399.RNA-Seq.chimeric.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 5d0b0b16-d2a6-477d-9bbb-a29270abed66.rna_seq.chimeric.gdc_realn.bam 40114806 BAM chimeric harmonized CPTAC3 efc06264-ccc1-4dfa-80c7-00009752b6a7 398f47e3b87101ed760c10161a30985d { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02399.RNA-Seq.chimeric.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171100001 ec7177b3-c06c-41b6-bab8-3e3ca8d0d04b.rna_seq.chimeric.gdc_realn.bam 117106554 BAM chimeric harmonized CPTAC3 99b0e1a1-3af5-41d1-af84-71938a0a2415 2245cedb96732d15cf2a9233b6e05717 { 'aliquot_tag': 'ALQ_1f55aa10', 'gdc_sample_type': 'Primary Tumor' } +C3L-02399.RNA-Seq.genomic.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 5d0b0b16-d2a6-477d-9bbb-a29270abed66.rna_seq.genomic.gdc_realn.bam 9393702873 BAM genomic harmonized CPTAC3 e81e8f6a-df44-4edc-9385-d8eb5dc9c676 1d0af22803b2dad8b2fcce13252b1e02 { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02399.RNA-Seq.genomic.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171100001 ec7177b3-c06c-41b6-bab8-3e3ca8d0d04b.rna_seq.genomic.gdc_realn.bam 7206822262 BAM genomic harmonized CPTAC3 9a9258f8-6e60-4a4f-abc0-b6e0431af87e 138db439c9ba79bca8bb6489fc1ca362 { 'aliquot_tag': 'ALQ_1f55aa10', 'gdc_sample_type': 'Primary Tumor' } +C3L-02399.RNA-Seq.R1_L001.T C3L-02399 UCEC RNA-Seq tumor CPT0171090014 190604_UNC32-K00270_0177_AH7F5VBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R1_001.fastq.gz 4398111754 FASTQ R1_L001 unaligned CPTAC3 7308da99-6002-4e45-aeb6-6fd5a77acbf2 a4b52a688c4f8dcfa3d7eff0332e56a8 { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02399.RNA-Seq.R2_L001.T C3L-02399 UCEC RNA-Seq tumor CPT0171090014 190604_UNC32-K00270_0177_AH7F5VBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R2_001.fastq.gz 5135156175 FASTQ R2_L001 unaligned CPTAC3 927d6c15-eca7-4fe6-ae1a-5477fd5e0a3e be70974896a6cd2dbdaa6e686ce6fefd { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02399.RNA-Seq.T C3L-02399 UCEC RNA-Seq tumor CPT0171100001 20210714_P1_C8_WB7988_plate1_S32_R1_001.fastq.gz 3816611577 FASTQ unaligned CPTAC3 51161131-c337-4e75-b7e5-544711e49b17 2a8aa5fca7f09f4e58392e1d76b46727 +C3L-02399.RNA-Seq.T C3L-02399 UCEC RNA-Seq tumor CPT0171100001 20210714_P1_C8_WB7988_plate1_S32_R2_001.fastq.gz 3996686135 FASTQ unaligned CPTAC3 09f885ed-ce46-46c6-9e65-0539ce371540 98074fc92adf2a505f151156b1d03042 +C3L-02399.RNA-Seq.transcriptome.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171090014 5d0b0b16-d2a6-477d-9bbb-a29270abed66.rna_seq.transcriptome.gdc_realn.bam 8997794097 BAM transcriptome harmonized CPTAC3 947ac616-20d6-4de2-9658-73b976991e32 f89d49e288e24bc5bdf077e4f21e5bec { 'aliquot_tag': 'ALQ_b068de0a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02399.RNA-Seq.transcriptome.T.hg38 C3L-02399 UCEC RNA-Seq tumor CPT0171100001 ec7177b3-c06c-41b6-bab8-3e3ca8d0d04b.rna_seq.transcriptome.gdc_realn.bam 2760125566 BAM transcriptome harmonized CPTAC3 6935143f-74ca-4185-b727-b9bf57763620 2bc7acb0a28e3852c895a0d7fe613ecf { 'aliquot_tag': 'ALQ_1f55aa10', 'gdc_sample_type': 'Primary Tumor' } C3L-02399.WGS.N C3L-02399 UCEC WGS blood_normal CPT0171120002 CPT0171120002.WholeGenome.RP-1303.bam 76046504188 BAM aligned CPTAC3 9dfde54b-1c8b-415d-b763-48cfbb298478 3ce5b1f045486273562410d76f9ff41c { 'aliquot_tag': 'ALQ_fc9ca8ca', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02399.WGS.N.hg38 C3L-02399 UCEC WGS blood_normal CPT0171120002 54efbba4-a6e0-4483-8b65-e5e89c443579_wgs_gdc_realn.bam 111890821546 BAM harmonized CPTAC3 c028d7e5-2439-456c-a58f-d69fc4d89fb2 845d42004f54a259eeae9a6d1ab21225 { 'aliquot_tag': 'ALQ_fc9ca8ca', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02399.WGS.T C3L-02399 UCEC WGS tumor CPT0171090011 CPT0171090011.WholeGenome.RP-1303.bam 96577309179 BAM aligned CPTAC3 bc6b906b-3f43-4f88-aa27-3c34728618ad efeb44e3d192c300c6e5ef70e77b4063 { 'aliquot_tag': 'ALQ_c0022a85', 'gdc_sample_type': 'Primary Tumor' } @@ -10353,13 +11096,16 @@ C3L-02403.MethArray.Green.T C3L-02403 UCEC Methylation Array tumor CPT0203150011 C3L-02403.MethArray.Red.T C3L-02403 UCEC Methylation Array tumor CPT0203150011 203561450014_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 434ea9d3-4e8a-4377-9cdd-fb29cdb343d8 9a7109e2413b56a1e21711a44271b8f3 { 'aliquot_tag': 'ALQ_6a7930d4', 'gdc_sample_type': 'Primary Tumor' } C3L-02403.miRNA-Seq.T C3L-02403 UCEC miRNA-Seq tumor CPT0203150014 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTCAA_S13_L003_R1_001.unaln.bam 206265894 BAM unaligned CPTAC3 fc8ff9d0-d530-40ed-b772-7a3dd8d8a4a3 b0a2ce9b42c43262ffb45d65684d1019 { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor' } C3L-02403.miRNA-Seq.T.hg38 C3L-02403 UCEC miRNA-Seq tumor CPT0203150014 d73f3409-b1b4-4ed2-af10-b9bb9a584df9_mirnaseq_gdc_realn.bam 234961009 BAM harmonized CPTAC3 80798e8a-36cb-47f3-aecb-f5c266f7afe0 11ec2a2e4d9dd6bd5f64fbb670bb5c0c { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02403.RNA-Seq.chimeric.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 61638840-412c-4aba-81f0-3f48b3458b9c.rna_seq.chimeric.gdc_realn.bam 40467822 BAM chimeric harmonized CPTAC3 a01f1b2f-c21c-4804-b5c1-3f3ab95ba487 48d4edeba1e1debb533540631bedb569 { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02403.RNA-Seq.genomic.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 61638840-412c-4aba-81f0-3f48b3458b9c.rna_seq.genomic.gdc_realn.bam 8699125889 BAM genomic harmonized CPTAC3 9ded5d2f-9aee-47ea-b385-f1045ee18da5 4f954900f9b56a1c1900883b561fe9fe { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02403.RNA-Seq.R1_L007.T C3L-02403 UCEC RNA-Seq tumor CPT0203150014 190523_UNC32-K00270_0176_BH7CW7BBXY_CGGAACTG-CACTACGA_S25_L007_R1_001.fastq.gz 4126823350 FASTQ R1_L007 unaligned CPTAC3 159a7980-cd45-4cd2-b34b-ef50471b0b29 9c9ce43ac4b9fb3e95538418d25af4a3 { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02403.RNA-Seq.R1_.T C3L-02403 UCEC RNA-Seq tumor CPT0203170001 20210723_P2_D7_WB7988-plate2_S43_R1_001.fastq.gz 5728380240 FASTQ R1_ unaligned CPTAC3 322072b6-7700-48f5-b5ab-3655f509b788 bbc626a61a4336df56f44d6687fa80bf { 'aliquot_tag': 'ALQ_9a252f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02403.RNA-Seq.R2_L007.T C3L-02403 UCEC RNA-Seq tumor CPT0203150014 190523_UNC32-K00270_0176_BH7CW7BBXY_CGGAACTG-CACTACGA_S25_L007_R2_001.fastq.gz 4768518399 FASTQ R2_L007 unaligned CPTAC3 a9f1b062-5ffe-4b1c-b64d-ecb8388cce0c 19551ae313a2db8237dbc47918700438 { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02403.RNA-Seq.R2_.T C3L-02403 UCEC RNA-Seq tumor CPT0203170001 20210723_P2_D7_WB7988-plate2_S43_R2_001.fastq.gz 5900956870 FASTQ R2_ unaligned CPTAC3 0eee380c-e6dc-431b-84a9-3290f4082b69 7cfcef63e54a57eaa82cbd4880d84be1 { 'aliquot_tag': 'ALQ_9a252f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02403.RNA-Seq.transcriptome.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 61638840-412c-4aba-81f0-3f48b3458b9c.rna_seq.transcriptome.gdc_realn.bam 8800611844 BAM transcriptome harmonized CPTAC3 80637ccb-59d1-4a30-8a90-0a96c4639c67 b21bdba3dbc630b9b768777be6ebf3e5 { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02403.RNA-Seq.chimeric.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 b47c5a80-f600-4b92-92e5-fb8482c8db14.rna_seq.chimeric.gdc_realn.bam 40460837 BAM chimeric harmonized CPTAC3 851586a6-f223-4154-89bb-5bede80b719b 4f8e0c7a71082c788ce33b9d7d93791f { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02403.RNA-Seq.chimeric.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203170001 edd6e063-9844-437c-b503-966e691d60f7.rna_seq.chimeric.gdc_realn.bam 169077099 BAM chimeric harmonized CPTAC3 ea66d6ee-56da-4a12-82c6-19e6865431c8 d915d20246ca38387d4b7c2c56673bb9 { 'aliquot_tag': 'ALQ_9a252f5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02403.RNA-Seq.genomic.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 b47c5a80-f600-4b92-92e5-fb8482c8db14.rna_seq.genomic.gdc_realn.bam 8699816364 BAM genomic harmonized CPTAC3 363dbaeb-cae7-4cd5-ad50-d813261ffb6f 32f8f566622ed861fa4deeccf6be23a4 { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02403.RNA-Seq.genomic.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203170001 edd6e063-9844-437c-b503-966e691d60f7.rna_seq.genomic.gdc_realn.bam 8676218517 BAM genomic harmonized CPTAC3 f9283581-47b1-4801-8886-b41be9324949 f2998cd4d46a8fd33dcfcb55f0d0eb4c { 'aliquot_tag': 'ALQ_9a252f5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02403.RNA-Seq.R1_L007.T C3L-02403 UCEC RNA-Seq tumor CPT0203150014 190523_UNC32-K00270_0176_BH7CW7BBXY_CGGAACTG-CACTACGA_S25_L007_R1_001.fastq.gz 4126823350 FASTQ R1_L007 unaligned CPTAC3 159a7980-cd45-4cd2-b34b-ef50471b0b29 9c9ce43ac4b9fb3e95538418d25af4a3 { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02403.RNA-Seq.R2_L007.T C3L-02403 UCEC RNA-Seq tumor CPT0203150014 190523_UNC32-K00270_0176_BH7CW7BBXY_CGGAACTG-CACTACGA_S25_L007_R2_001.fastq.gz 4768518399 FASTQ R2_L007 unaligned CPTAC3 a9f1b062-5ffe-4b1c-b64d-ecb8388cce0c 19551ae313a2db8237dbc47918700438 { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02403.RNA-Seq.T C3L-02403 UCEC RNA-Seq tumor CPT0203170001 20210723_P2_D7_WB7988-plate2_S43_R1_001.fastq.gz 5728380240 FASTQ unaligned CPTAC3 322072b6-7700-48f5-b5ab-3655f509b788 bbc626a61a4336df56f44d6687fa80bf +C3L-02403.RNA-Seq.T C3L-02403 UCEC RNA-Seq tumor CPT0203170001 20210723_P2_D7_WB7988-plate2_S43_R2_001.fastq.gz 5900956870 FASTQ unaligned CPTAC3 0eee380c-e6dc-431b-84a9-3290f4082b69 7cfcef63e54a57eaa82cbd4880d84be1 +C3L-02403.RNA-Seq.transcriptome.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203150014 b47c5a80-f600-4b92-92e5-fb8482c8db14.rna_seq.transcriptome.gdc_realn.bam 10155811559 BAM transcriptome harmonized CPTAC3 8d0a6750-24b9-401d-be90-57066d096a4f 81735f02181f6b1b89397379c555c45a { 'aliquot_tag': 'ALQ_1a13c45b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02403.RNA-Seq.transcriptome.T.hg38 C3L-02403 UCEC RNA-Seq tumor CPT0203170001 edd6e063-9844-437c-b503-966e691d60f7.rna_seq.transcriptome.gdc_realn.bam 6327826848 BAM transcriptome harmonized CPTAC3 f1e1b9ed-1e2a-416c-86e6-4cd5232b396e 80cf92efc502a710082f08c03f9187c7 { 'aliquot_tag': 'ALQ_9a252f5', 'gdc_sample_type': 'Primary Tumor' } C3L-02403.WGS.N C3L-02403 UCEC WGS blood_normal CPT0203210002 CPT0203210002.WholeGenome.RP-1303.bam 65867091611 BAM aligned CPTAC3 babe88b8-503e-49cf-a6cc-c8d3fa20d861 190969da6b268e50f090923d7d184278 { 'aliquot_tag': 'ALQ_997f8441', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02403.WGS.N.hg38 C3L-02403 UCEC WGS blood_normal CPT0203210002 ad7932ae-f64f-4d35-8b46-0e8bb5d5087f_wgs_gdc_realn.bam 96961690808 BAM harmonized CPTAC3 8d03e946-7b83-45b1-8574-c19c3e952aa5 c9297ad3eec4075546a8f46b763b1107 { 'aliquot_tag': 'ALQ_997f8441', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02403.WGS.T C3L-02403 UCEC WGS tumor CPT0203150011 CPT0203150011.WholeGenome.RP-1303.bam 63290257237 BAM aligned CPTAC3 d15d41aa-e289-49b0-9e57-3b501838c446 97f38cf586b880703931d0113d51f063 { 'aliquot_tag': 'ALQ_6a7930d4', 'gdc_sample_type': 'Primary Tumor' } @@ -10374,18 +11120,21 @@ C3L-02408.miRNA-Seq.A C3L-02408 UCEC miRNA-Seq tissue_normal CPT0111740009 19013 C3L-02408.miRNA-Seq.A.hg38 C3L-02408 UCEC miRNA-Seq tissue_normal CPT0111740009 3b2a3662-3977-4cbb-827a-7fdc6aa56c1f_mirnaseq_gdc_realn.bam 285241357 BAM harmonized CPTAC3 c6840c6d-3e7c-43d5-98e8-e24f7a123d4e e85f434dce6b12361d5a51ed8eb1d414 { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02408.miRNA-Seq.T C3L-02408 UCEC miRNA-Seq tumor CPT0111720006 190108_UNC31-K00269_0176_AHYGLVBBXX_GGCTAC_S11_L002_R1_001.unaln.bam 247052897 BAM unaligned CPTAC3 1f25db7e-0018-481d-b9be-b2881849bcc5 4b2ac11fbf66fd2a2a45ddb21667c3bc { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor' } C3L-02408.miRNA-Seq.T.hg38 C3L-02408 UCEC miRNA-Seq tumor CPT0111720006 9b4b0a82-9325-4b9c-9be2-9b353cfcd4e8_mirnaseq_gdc_realn.bam 272785696 BAM harmonized CPTAC3 9b9ff7bf-67d7-42e3-af98-86c475e35f24 ed16929e119f17a3102b1d7ac568d559 { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor' } -C3L-02408.RNA-Seq.chimeric.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 0c635e42-980f-477a-9747-731cc3be945e.rna_seq.chimeric.gdc_realn.bam 35273034 BAM chimeric harmonized CPTAC3 e172ece7-08a4-442e-a071-35f6019bd695 2b274761bebb1da147a76327dae7d33f { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02408.RNA-Seq.chimeric.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 f9a44d79-053e-421d-8e4f-75e38ed02e99.rna_seq.chimeric.gdc_realn.bam 30327412 BAM chimeric harmonized CPTAC3 081f3c53-89e8-41a5-9a97-dc1114bb77f1 3caa9757a761662dadca5f6453fc7530 { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor' } -C3L-02408.RNA-Seq.genomic.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 0c635e42-980f-477a-9747-731cc3be945e.rna_seq.genomic.gdc_realn.bam 9133935984 BAM genomic harmonized CPTAC3 4ca5a1b0-0fed-4ce5-aa34-70083e67d0f4 293f346bcc8a5aa25871cfc1f7c4779c { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02408.RNA-Seq.genomic.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 f9a44d79-053e-421d-8e4f-75e38ed02e99.rna_seq.genomic.gdc_realn.bam 8918057853 BAM genomic harmonized CPTAC3 91eb42bb-b036-4e4e-b889-afdbf1be2a29 583f8c7582c09d4eafc642a57f48eba8 { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor' } -C3L-02408.RNA-Seq.R1_L008.A C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 190118_UNC32-K00270_0139_AH3CHKBBXY_CAGATC_S8_L008_R1_001.fastq.gz 3618134131 FASTQ R1_L008 unaligned CPTAC3 2b713127-596d-41f7-8332-764d2378b685 5086606664dd285b90ba559759a99bf9 { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02408.RNA-Seq.R1_L008.T C3L-02408 UCEC RNA-Seq tumor CPT0111720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L008_R1_001.fastq.gz 3943217924 FASTQ R1_L008 unaligned CPTAC3 56d41787-3417-42a0-acae-f42e2f41e9ff 61841d7237e447c6cd811af52c775a0a { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor' } -C3L-02408.RNA-Seq.R1_.T C3L-02408 UCEC RNA-Seq tumor CPT0348060001 20210723_P2_B6_WB7988-plate2_S18_R1_001.fastq.gz 7861943248 FASTQ R1_ unaligned CPTAC3 6645664b-2f76-4807-a84c-808e824062b4 32b3dc424bd7224ffa0f79a51c99f097 { 'aliquot_tag': 'ALQ_6ea8e6a3', 'gdc_sample_type': 'Primary Tumor' } -C3L-02408.RNA-Seq.R2_L008.A C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 190118_UNC32-K00270_0139_AH3CHKBBXY_CAGATC_S8_L008_R2_001.fastq.gz 3799526666 FASTQ R2_L008 unaligned CPTAC3 a3616b7f-20e4-420b-91ce-cb3e5ba405a1 bffe0c2619d87a4901b76a18770467dc { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02408.RNA-Seq.R2_L008.T C3L-02408 UCEC RNA-Seq tumor CPT0111720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L008_R2_001.fastq.gz 4537821882 FASTQ R2_L008 unaligned CPTAC3 ff70f9a0-0fc2-4619-83c6-43d206e6ce66 7420cb8f48b7a89b81c0cf1a070f3095 { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor' } -C3L-02408.RNA-Seq.R2_.T C3L-02408 UCEC RNA-Seq tumor CPT0348060001 20210723_P2_B6_WB7988-plate2_S18_R2_001.fastq.gz 8126142883 FASTQ R2_ unaligned CPTAC3 b09c5e8a-24d0-4060-bfd6-53fd3c01d2cd 889176ce4ceac70ab13b630e0e1592ce { 'aliquot_tag': 'ALQ_6ea8e6a3', 'gdc_sample_type': 'Primary Tumor' } -C3L-02408.RNA-Seq.transcriptome.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 0c635e42-980f-477a-9747-731cc3be945e.rna_seq.transcriptome.gdc_realn.bam 9320271441 BAM transcriptome harmonized CPTAC3 38ab5695-6572-437a-845c-a497cf207298 473f3cebb61dd7c5efdde6d65bb7359c { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02408.RNA-Seq.transcriptome.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 f9a44d79-053e-421d-8e4f-75e38ed02e99.rna_seq.transcriptome.gdc_realn.bam 9215572779 BAM transcriptome harmonized CPTAC3 5c6e745e-99bb-4ba5-b774-4f602ab2d579 5f0a4d2b517d6a27714dcdfb187cc5f2 { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor' } +C3L-02408.RNA-Seq.chimeric.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 deb81b62-93f9-4014-bbdd-82f9204ca6b0.rna_seq.chimeric.gdc_realn.bam 35258140 BAM chimeric harmonized CPTAC3 ad1c8ff8-5b90-48ab-ad75-0d1d4651db8f df175658b65c1d3c7eaa0b336bbc447f { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02408.RNA-Seq.chimeric.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 620c7991-f82a-4749-8934-593206a43d32.rna_seq.chimeric.gdc_realn.bam 30316723 BAM chimeric harmonized CPTAC3 849b22d8-817b-475e-8e7b-acb7f4eaa82b 6f3b3af744fe33cff443808e0635e465 { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor' } +C3L-02408.RNA-Seq.chimeric.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0348060001 cb655b72-5b91-4f28-971c-44276bdc2a70.rna_seq.chimeric.gdc_realn.bam 227827841 BAM chimeric harmonized CPTAC3 66591ef6-3235-4a80-8d06-a66c834f4d42 c0f276f3e9aac32433ce5a545eae22a0 { 'aliquot_tag': 'ALQ_6ea8e6a3', 'gdc_sample_type': 'Primary Tumor' } +C3L-02408.RNA-Seq.genomic.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 deb81b62-93f9-4014-bbdd-82f9204ca6b0.rna_seq.genomic.gdc_realn.bam 9136206198 BAM genomic harmonized CPTAC3 7fadfbc5-e316-45a1-82bd-d9fca3f0f75d e346aaa7a58ba2cb43d05ca893e9c1b0 { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02408.RNA-Seq.genomic.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 620c7991-f82a-4749-8934-593206a43d32.rna_seq.genomic.gdc_realn.bam 8919243947 BAM genomic harmonized CPTAC3 36f9ecd0-7160-41f0-8f44-84e923447e6c 2dd5ae6df8fdef8ebff6cc05bf80ecf1 { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor' } +C3L-02408.RNA-Seq.genomic.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0348060001 cb655b72-5b91-4f28-971c-44276bdc2a70.rna_seq.genomic.gdc_realn.bam 13080026970 BAM genomic harmonized CPTAC3 2868cac3-8dc2-4ccb-9fb6-971506855b08 f0e222872fcf39a00a2b05f10af0e1a8 { 'aliquot_tag': 'ALQ_6ea8e6a3', 'gdc_sample_type': 'Primary Tumor' } +C3L-02408.RNA-Seq.R1_L008.A C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 190118_UNC32-K00270_0139_AH3CHKBBXY_CAGATC_S8_L008_R1_001.fastq.gz 3618134131 FASTQ R1_L008 unaligned CPTAC3 2b713127-596d-41f7-8332-764d2378b685 5086606664dd285b90ba559759a99bf9 { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02408.RNA-Seq.R1_L008.T C3L-02408 UCEC RNA-Seq tumor CPT0111720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L008_R1_001.fastq.gz 3943217924 FASTQ R1_L008 unaligned CPTAC3 56d41787-3417-42a0-acae-f42e2f41e9ff 61841d7237e447c6cd811af52c775a0a { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02408.RNA-Seq.R2_L008.A C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 190118_UNC32-K00270_0139_AH3CHKBBXY_CAGATC_S8_L008_R2_001.fastq.gz 3799526666 FASTQ R2_L008 unaligned CPTAC3 a3616b7f-20e4-420b-91ce-cb3e5ba405a1 bffe0c2619d87a4901b76a18770467dc { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02408.RNA-Seq.R2_L008.T C3L-02408 UCEC RNA-Seq tumor CPT0111720006 181207_UNC32-K00270_0137_BH2LYCBBXY_GGCTAC_S8_L008_R2_001.fastq.gz 4537821882 FASTQ R2_L008 unaligned CPTAC3 ff70f9a0-0fc2-4619-83c6-43d206e6ce66 7420cb8f48b7a89b81c0cf1a070f3095 { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-02408.RNA-Seq.T C3L-02408 UCEC RNA-Seq tumor CPT0348060001 20210723_P2_B6_WB7988-plate2_S18_R1_001.fastq.gz 7861943248 FASTQ unaligned CPTAC3 6645664b-2f76-4807-a84c-808e824062b4 32b3dc424bd7224ffa0f79a51c99f097 +C3L-02408.RNA-Seq.T C3L-02408 UCEC RNA-Seq tumor CPT0348060001 20210723_P2_B6_WB7988-plate2_S18_R2_001.fastq.gz 8126142883 FASTQ unaligned CPTAC3 b09c5e8a-24d0-4060-bfd6-53fd3c01d2cd 889176ce4ceac70ab13b630e0e1592ce +C3L-02408.RNA-Seq.transcriptome.A.hg38 C3L-02408 UCEC RNA-Seq tissue_normal CPT0111740009 deb81b62-93f9-4014-bbdd-82f9204ca6b0.rna_seq.transcriptome.gdc_realn.bam 10744070449 BAM transcriptome harmonized CPTAC3 2d5f34df-2580-4031-bb8e-8dc8531796b3 bfc822a6dd54a4c12f9aab33dfa9be75 { 'aliquot_tag': 'ALQ_f4386e78', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02408.RNA-Seq.transcriptome.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0111720006 620c7991-f82a-4749-8934-593206a43d32.rna_seq.transcriptome.gdc_realn.bam 10678032368 BAM transcriptome harmonized CPTAC3 d3021dee-b7e0-49ee-899c-9ab242523c47 d53acc6cefda4c4140f73efec9b84923 { 'aliquot_tag': 'ALQ_ebc78649', 'gdc_sample_type': 'Primary Tumor' } +C3L-02408.RNA-Seq.transcriptome.T.hg38 C3L-02408 UCEC RNA-Seq tumor CPT0348060001 cb655b72-5b91-4f28-971c-44276bdc2a70.rna_seq.transcriptome.gdc_realn.bam 8509813235 BAM transcriptome harmonized CPTAC3 aeb9cf46-05a2-40af-87a4-8a03794842d4 681ee66d3a6b4198b1a7ee1647bf55f1 { 'aliquot_tag': 'ALQ_6ea8e6a3', 'gdc_sample_type': 'Primary Tumor' } C3L-02408.WGS.A C3L-02408 UCEC WGS tissue_normal CPT0111740006 CPT0111740006.WholeGenome.RP-1303.bam 56165100135 BAM aligned CPTAC3 bfb17cc4-9414-40d8-a474-b6e54a900ee0 4eb58c12a3773c57412bd4569f10b351 { 'aliquot_tag': 'ALQ_648773e9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02408.WGS.A.hg38 C3L-02408 UCEC WGS tissue_normal CPT0111740006 7d3d60f8-567d-4d86-a1de-d81ef50070fe_wgs_gdc_realn.bam 82005546972 BAM harmonized CPTAC3 3f19116c-0210-40ac-b732-757527a5dffc 08c1fd033bd108a8279b45df9f09b89c { 'aliquot_tag': 'ALQ_648773e9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02408.WGS.N C3L-02408 UCEC WGS blood_normal CPT0112800002 CPT0112800002.WholeGenome.RP-1303.bam 58626542745 BAM aligned CPTAC3 59284f6e-0390-4e7a-82a4-8aabff1fe604 0584f787a6cfe4b64b4199b5cd473d4b { 'aliquot_tag': 'ALQ_56d4b978', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10404,18 +11153,21 @@ C3L-02409.miRNA-Seq.A C3L-02409 UCEC miRNA-Seq tissue_normal CPT0111820009 19013 C3L-02409.miRNA-Seq.A.hg38 C3L-02409 UCEC miRNA-Seq tissue_normal CPT0111820009 dd92407f-a8aa-4de3-b758-19350a43aad1_mirnaseq_gdc_realn.bam 299281832 BAM harmonized CPTAC3 84dec196-be4e-4c45-b168-785e6da4a50a ab18648ea1b01ab8451bc6b6bba5e5ec { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02409.miRNA-Seq.T C3L-02409 UCEC miRNA-Seq tumor CPT0111810006 190108_UNC31-K00269_0176_AHYGLVBBXX_CTTGTA_S12_L002_R1_001.unaln.bam 203584817 BAM unaligned CPTAC3 7644ad3a-96a6-4608-8165-5da3a9f79ef0 74e4eb6c8710caebe943de295bc1fca1 { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor' } C3L-02409.miRNA-Seq.T.hg38 C3L-02409 UCEC miRNA-Seq tumor CPT0111810006 d8d0c5af-a161-452b-ab47-3cd11cbe522b_mirnaseq_gdc_realn.bam 217918353 BAM harmonized CPTAC3 e01168e9-b88a-48b8-96a0-8cfd484b19e4 d5990463aebfdb9e9e261040baa01e4c { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02409.RNA-Seq.chimeric.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 7d5e4156-3778-4fdb-b7e9-09622c62c9a2.rna_seq.chimeric.gdc_realn.bam 36108327 BAM chimeric harmonized CPTAC3 4a1694e7-6d53-4dbc-ac75-e9b60aad6289 0bf637d8c54104b943447761f68f69d1 { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02409.RNA-Seq.chimeric.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 ea3a065d-d378-456c-a4f9-8d00e38007e1.rna_seq.chimeric.gdc_realn.bam 29770194 BAM chimeric harmonized CPTAC3 a3e0544f-5621-4ac6-aeff-a0ff1cd147b7 bef5123399c8d3316c0100403411bc8c { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02409.RNA-Seq.genomic.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 7d5e4156-3778-4fdb-b7e9-09622c62c9a2.rna_seq.genomic.gdc_realn.bam 8833133441 BAM genomic harmonized CPTAC3 1adcc75f-eccf-4df0-985e-dce58a93c5c7 6577c486db028349399e446aef734345 { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02409.RNA-Seq.genomic.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 ea3a065d-d378-456c-a4f9-8d00e38007e1.rna_seq.genomic.gdc_realn.bam 8718745247 BAM genomic harmonized CPTAC3 a283f3a0-ed4b-49d2-906f-9ad87673de33 a0269d4e0cc29835ae781198bd8dda4d { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02409.RNA-Seq.R1_L008.A C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 190118_UNC32-K00270_0139_AH3CHKBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3460482013 FASTQ R1_L008 unaligned CPTAC3 a6927022-909e-40cc-b062-2b7392ddf701 e7ebc590132dec146a60ab69bbe25b8d { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02409.RNA-Seq.R1_L008.T C3L-02409 UCEC RNA-Seq tumor CPT0111810006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L008_R1_001.fastq.gz 3865691702 FASTQ R1_L008 unaligned CPTAC3 14bb434c-51e3-453e-aad4-44249dd90ed5 6dbc631db9cddb8f3ef7b1bae55561f3 { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02409.RNA-Seq.R1_.T C3L-02409 UCEC RNA-Seq tumor CPT0348110001 20210723_P2_C4_WB7988-plate2_S28_R1_001.fastq.gz 6340904547 FASTQ R1_ unaligned CPTAC3 d1ea33e3-bac8-4f9f-88a6-f8e52b025eac 15bfdb7e78a790516621de8d431701ab { 'aliquot_tag': 'ALQ_17d4e916', 'gdc_sample_type': 'Primary Tumor' } -C3L-02409.RNA-Seq.R2_L008.A C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 190118_UNC32-K00270_0139_AH3CHKBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 3620868710 FASTQ R2_L008 unaligned CPTAC3 43b350af-96f0-492c-9983-23ccd7366854 5d81550115c45a554bed47dd67620b70 { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02409.RNA-Seq.R2_L008.T C3L-02409 UCEC RNA-Seq tumor CPT0111810006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L008_R2_001.fastq.gz 4323666753 FASTQ R2_L008 unaligned CPTAC3 c024635f-5f2c-4144-9f96-b84ef4df26d1 b7f117f411f1da61ce6365e7af099126 { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02409.RNA-Seq.R2_.T C3L-02409 UCEC RNA-Seq tumor CPT0348110001 20210723_P2_C4_WB7988-plate2_S28_R2_001.fastq.gz 6447997136 FASTQ R2_ unaligned CPTAC3 cdc1227c-1b1d-4fc4-96dd-4b8493d74aa5 b37fd4f8c81de347fa4e2dd0e7d38817 { 'aliquot_tag': 'ALQ_17d4e916', 'gdc_sample_type': 'Primary Tumor' } -C3L-02409.RNA-Seq.transcriptome.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 7d5e4156-3778-4fdb-b7e9-09622c62c9a2.rna_seq.transcriptome.gdc_realn.bam 7429524334 BAM transcriptome harmonized CPTAC3 1839ee28-6434-4ef5-ac75-f28cd3117335 9c2681d138d22989776ee8025ee84612 { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02409.RNA-Seq.transcriptome.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 ea3a065d-d378-456c-a4f9-8d00e38007e1.rna_seq.transcriptome.gdc_realn.bam 10374221917 BAM transcriptome harmonized CPTAC3 c0b4db4f-3604-423d-b995-50b8fee4d67d 03c9ec17717a8ae86055dc9dd31d99a7 { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02409.RNA-Seq.chimeric.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 f7e81dac-12ca-40a7-b3c0-2e6fb5c30b09.rna_seq.chimeric.gdc_realn.bam 36090068 BAM chimeric harmonized CPTAC3 05fbbf01-662c-4bac-973d-70b3947a2ab7 7f9c43b2f9819f57fbca3386e78122a0 { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02409.RNA-Seq.chimeric.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 2647c3cc-d89d-48a3-9756-439431b12ece.rna_seq.chimeric.gdc_realn.bam 29753999 BAM chimeric harmonized CPTAC3 625dfd06-8efa-49e5-8ee4-9def5f37cfe2 ef55f50cad2d14f01a88e36c3f114c06 { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02409.RNA-Seq.chimeric.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0348110001 f121553f-3a29-4c5f-b71e-dc7351c39fed.rna_seq.chimeric.gdc_realn.bam 242247672 BAM chimeric harmonized CPTAC3 f98e322a-6378-4686-a661-5dba1a475f9a 68b1dd727f291113f02d9bb6dbad3f90 { 'aliquot_tag': 'ALQ_17d4e916', 'gdc_sample_type': 'Primary Tumor' } +C3L-02409.RNA-Seq.genomic.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 f7e81dac-12ca-40a7-b3c0-2e6fb5c30b09.rna_seq.genomic.gdc_realn.bam 8834215564 BAM genomic harmonized CPTAC3 619d06a4-42a8-45d8-912b-093e7a30b5a9 178d2c91172c70c5878402bfbd04ef90 { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02409.RNA-Seq.genomic.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 2647c3cc-d89d-48a3-9756-439431b12ece.rna_seq.genomic.gdc_realn.bam 8720182377 BAM genomic harmonized CPTAC3 77096f1d-5c87-4667-bfd6-55ff1966c8f4 d70b0d40e17edecd050bf579dff4b2b8 { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02409.RNA-Seq.genomic.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0348110001 f121553f-3a29-4c5f-b71e-dc7351c39fed.rna_seq.genomic.gdc_realn.bam 10919686737 BAM genomic harmonized CPTAC3 c0af9993-8eb8-49b4-a234-b5b31b5942c9 5bb81e341110ad84fde3ca9f4e7c095d { 'aliquot_tag': 'ALQ_17d4e916', 'gdc_sample_type': 'Primary Tumor' } +C3L-02409.RNA-Seq.R1_L008.A C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 190118_UNC32-K00270_0139_AH3CHKBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3460482013 FASTQ R1_L008 unaligned CPTAC3 a6927022-909e-40cc-b062-2b7392ddf701 e7ebc590132dec146a60ab69bbe25b8d { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02409.RNA-Seq.R1_L008.T C3L-02409 UCEC RNA-Seq tumor CPT0111810006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L008_R1_001.fastq.gz 3865691702 FASTQ R1_L008 unaligned CPTAC3 14bb434c-51e3-453e-aad4-44249dd90ed5 6dbc631db9cddb8f3ef7b1bae55561f3 { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02409.RNA-Seq.R2_L008.A C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 190118_UNC32-K00270_0139_AH3CHKBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 3620868710 FASTQ R2_L008 unaligned CPTAC3 43b350af-96f0-492c-9983-23ccd7366854 5d81550115c45a554bed47dd67620b70 { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02409.RNA-Seq.R2_L008.T C3L-02409 UCEC RNA-Seq tumor CPT0111810006 181207_UNC32-K00270_0137_BH2LYCBBXY_CTTGTA_S7_L008_R2_001.fastq.gz 4323666753 FASTQ R2_L008 unaligned CPTAC3 c024635f-5f2c-4144-9f96-b84ef4df26d1 b7f117f411f1da61ce6365e7af099126 { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-02409.RNA-Seq.T C3L-02409 UCEC RNA-Seq tumor CPT0348110001 20210723_P2_C4_WB7988-plate2_S28_R1_001.fastq.gz 6340904547 FASTQ unaligned CPTAC3 d1ea33e3-bac8-4f9f-88a6-f8e52b025eac 15bfdb7e78a790516621de8d431701ab +C3L-02409.RNA-Seq.T C3L-02409 UCEC RNA-Seq tumor CPT0348110001 20210723_P2_C4_WB7988-plate2_S28_R2_001.fastq.gz 6447997136 FASTQ unaligned CPTAC3 cdc1227c-1b1d-4fc4-96dd-4b8493d74aa5 b37fd4f8c81de347fa4e2dd0e7d38817 +C3L-02409.RNA-Seq.transcriptome.A.hg38 C3L-02409 UCEC RNA-Seq tissue_normal CPT0111820009 f7e81dac-12ca-40a7-b3c0-2e6fb5c30b09.rna_seq.transcriptome.gdc_realn.bam 8531590868 BAM transcriptome harmonized CPTAC3 74aa7b99-a47d-45b6-add5-d7ee5aa6a673 6fdefb86ed91186f3b46abbeef1c385c { 'aliquot_tag': 'ALQ_8a2e290d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02409.RNA-Seq.transcriptome.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0111810006 2647c3cc-d89d-48a3-9756-439431b12ece.rna_seq.transcriptome.gdc_realn.bam 11802762544 BAM transcriptome harmonized CPTAC3 99116155-3616-4354-b28f-d91018d426ec 6fc7ef043e5b87b568be0f587b8540c3 { 'aliquot_tag': 'ALQ_5d314e4c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02409.RNA-Seq.transcriptome.T.hg38 C3L-02409 UCEC RNA-Seq tumor CPT0348110001 f121553f-3a29-4c5f-b71e-dc7351c39fed.rna_seq.transcriptome.gdc_realn.bam 5960996971 BAM transcriptome harmonized CPTAC3 043aefd7-2a08-41a2-80e1-97058e5354ce 8786eb200ef3071b2c46e5f3ef2e38b9 { 'aliquot_tag': 'ALQ_17d4e916', 'gdc_sample_type': 'Primary Tumor' } C3L-02409.WGS.N C3L-02409 UCEC WGS blood_normal CPT0112820002 CPT0112820002.WholeGenome.RP-1303.bam 64903962064 BAM aligned CPTAC3 1f3bf291-08cd-4532-b76a-d0ca9bdc64e8 04bad01d7ababb29297c745e26a44990 { 'aliquot_tag': 'ALQ_2c14ea18', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02409.WGS.N.hg38 C3L-02409 UCEC WGS blood_normal CPT0112820002 81896c68-aa31-46a4-97ac-71439743c2b8_wgs_gdc_realn.bam 93217125448 BAM harmonized CPTAC3 a8c88020-9768-406c-9fcb-a6e650f5a0dd 1232d3d9d6f2e2fa61be258319fba9da { 'aliquot_tag': 'ALQ_2c14ea18', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02409.WGS.T C3L-02409 UCEC WGS tumor CPT0111810009 CPT0111810009.WholeGenome.RP-1303.bam 67103423453 BAM aligned CPTAC3 9edf8734-5466-401d-abe2-2f40ee23ba0a 2895a0d5cafeea41c49e11fc2fadd5d6 { 'aliquot_tag': 'ALQ_cd8e53dd', 'gdc_sample_type': 'Primary Tumor' } @@ -10430,13 +11182,16 @@ C3L-02411.MethArray.Green.T C3L-02411 UCEC Methylation Array tumor CPT0111880009 C3L-02411.MethArray.Red.T C3L-02411 UCEC Methylation Array tumor CPT0111880009 203220070217_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 5d81d677-f22a-454b-9685-4a7f92a4a649 394056e99b8fee529da1a1320395f4cf { 'aliquot_tag': 'ALQ_c09e31ac', 'gdc_sample_type': 'Primary Tumor' } C3L-02411.miRNA-Seq.T C3L-02411 UCEC miRNA-Seq tumor CPT0111880006 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTCAA_S13_L002_R1_001.unaln.bam 211023200 BAM unaligned CPTAC3 ebceb14e-0cc3-4493-90e2-41d4b1efad41 d921cfb5ea36b361f9d55f8f305aa227 { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor' } C3L-02411.miRNA-Seq.T.hg38 C3L-02411 UCEC miRNA-Seq tumor CPT0111880006 721e79c8-cb84-4b8b-8cf7-2607b872d9f0_mirnaseq_gdc_realn.bam 234113888 BAM harmonized CPTAC3 1c90d873-1357-4d29-946d-98458cd7ffb3 c62c8bdf2c20cb347fbbcdbb60f692cb { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02411.RNA-Seq.chimeric.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 19114e66-4fcd-4d3c-a3f5-3bb806ad23c6.rna_seq.chimeric.gdc_realn.bam 27430146 BAM chimeric harmonized CPTAC3 6d3336a9-3f10-44ab-a36d-dbc81e0cda00 ae0cb8352c02325dc4a0fa945f8c5496 { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02411.RNA-Seq.genomic.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 19114e66-4fcd-4d3c-a3f5-3bb806ad23c6.rna_seq.genomic.gdc_realn.bam 7401003345 BAM genomic harmonized CPTAC3 d43aa43b-35a6-4cb6-9360-83edb5525ccc 2f732c81d77238b42430f48028deed25 { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02411.RNA-Seq.R1_L007.T C3L-02411 UCEC RNA-Seq tumor CPT0111880006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L007_R1_001.fastq.gz 3308226370 FASTQ R1_L007 unaligned CPTAC3 f774f09c-dc3a-4bc7-a507-e60277660a00 04438c14b305929f18ea8093144c6b00 { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02411.RNA-Seq.R1_.T C3L-02411 UCEC RNA-Seq tumor CPT0348140001 20210714_P1_E9_WB7988_plate1_S57_R1_001.fastq.gz 7929005404 FASTQ R1_ unaligned CPTAC3 7a2313e3-793e-4f7a-a581-b9c04114be26 cf432f857c3a765ee07d1843ede0b28e { 'aliquot_tag': 'ALQ_df346666', 'gdc_sample_type': 'Primary Tumor' } -C3L-02411.RNA-Seq.R2_L007.T C3L-02411 UCEC RNA-Seq tumor CPT0111880006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L007_R2_001.fastq.gz 3587709068 FASTQ R2_L007 unaligned CPTAC3 4a5b8233-dfb8-4b8d-822d-e58724ec646b 182e491cac01607b175fb7ce05ff4312 { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02411.RNA-Seq.R2_.T C3L-02411 UCEC RNA-Seq tumor CPT0348140001 20210714_P1_E9_WB7988_plate1_S57_R2_001.fastq.gz 8280240762 FASTQ R2_ unaligned CPTAC3 6be38c27-c7f8-40b5-82b3-44acc244e085 ec6649e52ed45247d463873624cddec9 { 'aliquot_tag': 'ALQ_df346666', 'gdc_sample_type': 'Primary Tumor' } -C3L-02411.RNA-Seq.transcriptome.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 19114e66-4fcd-4d3c-a3f5-3bb806ad23c6.rna_seq.transcriptome.gdc_realn.bam 8675260410 BAM transcriptome harmonized CPTAC3 053feee4-5e41-4731-8a1a-6ebacd9a74ea 7dae8d34d609bb4b876d741e42a4833f { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02411.RNA-Seq.chimeric.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 ba2fad76-557f-4b8e-99f9-93f67da2f2db.rna_seq.chimeric.gdc_realn.bam 27415178 BAM chimeric harmonized CPTAC3 8c841a9e-38bb-4cbc-9ef7-18bc265ddf15 fc143f385a004e01c67c6c16e1cce3d2 { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02411.RNA-Seq.chimeric.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0348140001 6339f900-60a2-4d3d-95ff-2019a1257d12.rna_seq.chimeric.gdc_realn.bam 230554674 BAM chimeric harmonized CPTAC3 5311c4f0-4053-4635-9cda-cc20db7fe101 0ccb010c5c399e0acd9969b7538d8412 { 'aliquot_tag': 'ALQ_df346666', 'gdc_sample_type': 'Primary Tumor' } +C3L-02411.RNA-Seq.genomic.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 ba2fad76-557f-4b8e-99f9-93f67da2f2db.rna_seq.genomic.gdc_realn.bam 7402513598 BAM genomic harmonized CPTAC3 a96c740b-bcca-4df0-9835-25d9c7fe57cc 454598b53a072e20cb829593f2719335 { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02411.RNA-Seq.genomic.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0348140001 6339f900-60a2-4d3d-95ff-2019a1257d12.rna_seq.genomic.gdc_realn.bam 12859994243 BAM genomic harmonized CPTAC3 94e6e333-0065-4571-bf25-023adb7ca5a5 f9a9e82c862fd276016daa54885cb54d { 'aliquot_tag': 'ALQ_df346666', 'gdc_sample_type': 'Primary Tumor' } +C3L-02411.RNA-Seq.R1_L007.T C3L-02411 UCEC RNA-Seq tumor CPT0111880006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L007_R1_001.fastq.gz 3308226370 FASTQ R1_L007 unaligned CPTAC3 f774f09c-dc3a-4bc7-a507-e60277660a00 04438c14b305929f18ea8093144c6b00 { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02411.RNA-Seq.R2_L007.T C3L-02411 UCEC RNA-Seq tumor CPT0111880006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTCAA_S3_L007_R2_001.fastq.gz 3587709068 FASTQ R2_L007 unaligned CPTAC3 4a5b8233-dfb8-4b8d-822d-e58724ec646b 182e491cac01607b175fb7ce05ff4312 { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02411.RNA-Seq.T C3L-02411 UCEC RNA-Seq tumor CPT0348140001 20210714_P1_E9_WB7988_plate1_S57_R1_001.fastq.gz 7929005404 FASTQ unaligned CPTAC3 7a2313e3-793e-4f7a-a581-b9c04114be26 cf432f857c3a765ee07d1843ede0b28e +C3L-02411.RNA-Seq.T C3L-02411 UCEC RNA-Seq tumor CPT0348140001 20210714_P1_E9_WB7988_plate1_S57_R2_001.fastq.gz 8280240762 FASTQ unaligned CPTAC3 6be38c27-c7f8-40b5-82b3-44acc244e085 ec6649e52ed45247d463873624cddec9 +C3L-02411.RNA-Seq.transcriptome.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0111880006 ba2fad76-557f-4b8e-99f9-93f67da2f2db.rna_seq.transcriptome.gdc_realn.bam 9883721495 BAM transcriptome harmonized CPTAC3 4ac79bcb-8014-432c-840c-1dddd2ab14d8 f1c0baa65bf59e69587964e41823c258 { 'aliquot_tag': 'ALQ_50212c3d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02411.RNA-Seq.transcriptome.T.hg38 C3L-02411 UCEC RNA-Seq tumor CPT0348140001 6339f900-60a2-4d3d-95ff-2019a1257d12.rna_seq.transcriptome.gdc_realn.bam 9381247173 BAM transcriptome harmonized CPTAC3 9bfd106b-804a-4f2c-9240-e63e332dd4c1 73bdb37a9f343804936851ec71b9683b { 'aliquot_tag': 'ALQ_df346666', 'gdc_sample_type': 'Primary Tumor' } C3L-02411.WGS.N C3L-02411 UCEC WGS blood_normal CPT0112840002 CPT0112840002.WholeGenome.RP-1303.bam 56837803305 BAM aligned CPTAC3 2f3171e9-9ca1-4db2-9fbe-2b375c4ad031 cded913ad5928621aafaa7f9483ca28d { 'aliquot_tag': 'ALQ_a3541fb8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02411.WGS.N.hg38 C3L-02411 UCEC WGS blood_normal CPT0112840002 aff3933b-05f9-4d3c-bb1f-bfac8b2df77b_wgs_gdc_realn.bam 81671795192 BAM harmonized CPTAC3 2d2cffc0-a786-409c-a71c-6bad1a8c1c59 28203a98e5c8bf7c3b1fd833e8ff61bc { 'aliquot_tag': 'ALQ_a3541fb8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02411.WGS.T C3L-02411 UCEC WGS tumor CPT0111880009 CPT0111880009.WholeGenome.RP-1303.bam 52194051926 BAM aligned CPTAC3 aebc393b-8b69-471d-ada4-64c8c9242810 c3750372f34c7d5a4e6dcefadbf57145 { 'aliquot_tag': 'ALQ_c09e31ac', 'gdc_sample_type': 'Primary Tumor' } @@ -10451,18 +11206,21 @@ C3L-02412.miRNA-Seq.A C3L-02412 UCEC miRNA-Seq tissue_normal CPT0111980007 19013 C3L-02412.miRNA-Seq.A.hg38 C3L-02412 UCEC miRNA-Seq tissue_normal CPT0111980007 d6ab8ebf-e794-45c4-8667-7de5951f2e26_mirnaseq_gdc_realn.bam 253964770 BAM harmonized CPTAC3 f8809677-eac1-4734-b9e4-976591c19816 9ed5284566d0f9a348d100241ada0087 { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02412.miRNA-Seq.T C3L-02412 UCEC miRNA-Seq tumor CPT0111950006 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTTCC_S14_L002_R1_001.unaln.bam 182653593 BAM unaligned CPTAC3 3dfd218d-72fe-4b7f-a63c-c4ece52ce672 fc88930fa8de091d5f009603b113c6db { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor' } C3L-02412.miRNA-Seq.T.hg38 C3L-02412 UCEC miRNA-Seq tumor CPT0111950006 213aef35-67f9-4131-b30e-9c1b248d7947_mirnaseq_gdc_realn.bam 197276799 BAM harmonized CPTAC3 eb83bde6-0048-4f92-b906-3516dc5c331b d45747ccbe887f86dcc795a6004d751b { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor' } -C3L-02412.RNA-Seq.chimeric.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 fadc040f-2a8b-4e38-848b-266cf1c68810.rna_seq.chimeric.gdc_realn.bam 40416708 BAM chimeric harmonized CPTAC3 a924eea4-e0cb-4f78-a911-19a23c93e916 b47fb24ea445d9dff83462957bac5f73 { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02412.RNA-Seq.chimeric.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 89aa0fe9-38d9-4791-a4d6-532ba0784bef.rna_seq.chimeric.gdc_realn.bam 29391980 BAM chimeric harmonized CPTAC3 dbe9de16-a5b2-4586-84a6-28ce02a5827f c29d3543288c37e09a3045faad7af1b7 { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor' } -C3L-02412.RNA-Seq.genomic.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 fadc040f-2a8b-4e38-848b-266cf1c68810.rna_seq.genomic.gdc_realn.bam 9650015071 BAM genomic harmonized CPTAC3 67fb43dc-1a99-4a9a-9f20-cd0568c9ceb0 7838a1da416a61b25264527c8d69d6b1 { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02412.RNA-Seq.genomic.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 89aa0fe9-38d9-4791-a4d6-532ba0784bef.rna_seq.genomic.gdc_realn.bam 8846570587 BAM genomic harmonized CPTAC3 d7267664-fb24-470a-abb5-3cb0c16da527 8a5edebeb722d3192072a0037df1da9a { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor' } -C3L-02412.RNA-Seq.R1_L001.A C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3808109443 FASTQ R1_L001 unaligned CPTAC3 e05c93fc-1e4f-4d51-82a7-58c01816a142 e13d76c2755fe46e1a3732d5027606af { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02412.RNA-Seq.R1_L007.T C3L-02412 UCEC RNA-Seq tumor CPT0111950006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L007_R1_001.fastq.gz 4005521705 FASTQ R1_L007 unaligned CPTAC3 9e02b72f-5d15-4ebd-ad2d-d90b9cfca76a 673eafb024120c44e529b8a93819edfc { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor' } -C3L-02412.RNA-Seq.R1_.T C3L-02412 UCEC RNA-Seq tumor CPT0348170001 20210723_P2_F5_WB7988-plate2_S65_R1_001.fastq.gz 4283516048 FASTQ R1_ unaligned CPTAC3 bafdfc8b-5a57-4e55-9cbc-19dc6acc211e e5e5c24efba3fd9e2f8ab67cc35e154a { 'aliquot_tag': 'ALQ_98941cb6', 'gdc_sample_type': 'Primary Tumor' } -C3L-02412.RNA-Seq.R2_L001.A C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4250017479 FASTQ R2_L001 unaligned CPTAC3 5f1eae01-e250-4622-8fff-f3d8212dcd83 2fdea067e408b8f17364dbd520427f14 { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02412.RNA-Seq.R2_L007.T C3L-02412 UCEC RNA-Seq tumor CPT0111950006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L007_R2_001.fastq.gz 4333965191 FASTQ R2_L007 unaligned CPTAC3 e52c832f-62e8-4c01-b6f9-6146fff0feb9 221bed5bb5484454d6352c120038cb70 { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor' } -C3L-02412.RNA-Seq.R2_.T C3L-02412 UCEC RNA-Seq tumor CPT0348170001 20210723_P2_F5_WB7988-plate2_S65_R2_001.fastq.gz 4395270888 FASTQ R2_ unaligned CPTAC3 42caf0f7-a0ee-4535-81eb-f4dd7191aa32 2ac40f59a562764c69c889d84c4da635 { 'aliquot_tag': 'ALQ_98941cb6', 'gdc_sample_type': 'Primary Tumor' } -C3L-02412.RNA-Seq.transcriptome.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 fadc040f-2a8b-4e38-848b-266cf1c68810.rna_seq.transcriptome.gdc_realn.bam 9458008346 BAM transcriptome harmonized CPTAC3 0b4f0ab0-db14-42a7-94f8-23fd31ca9826 373bb2e5acad9df2cd1ef00ec3905090 { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02412.RNA-Seq.transcriptome.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 89aa0fe9-38d9-4791-a4d6-532ba0784bef.rna_seq.transcriptome.gdc_realn.bam 10408304838 BAM transcriptome harmonized CPTAC3 9efeb31f-a263-47ed-8afe-38cabd2905a9 9ca0907c961ae445fc4920e9b84f9646 { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor' } +C3L-02412.RNA-Seq.chimeric.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 8fa186f5-1e4e-45e4-8808-130266fabb62.rna_seq.chimeric.gdc_realn.bam 40394096 BAM chimeric harmonized CPTAC3 b431ec42-30a3-4a30-8912-7e908db0480a 963e28326d38f30d5b85d7586e4fad4c { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02412.RNA-Seq.chimeric.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 5f5e3a6a-6fc7-4170-b8d3-6c002963a6ce.rna_seq.chimeric.gdc_realn.bam 29381630 BAM chimeric harmonized CPTAC3 415c87f5-82d0-4b9f-aece-cf450ab9df1f 206d319f048edb44d7aa35d41870555c { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor' } +C3L-02412.RNA-Seq.chimeric.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0348170001 0edecbfa-1c71-4919-9e19-8daeb1289aa8.rna_seq.chimeric.gdc_realn.bam 165662012 BAM chimeric harmonized CPTAC3 fca1478c-7f0a-4b2e-a0fc-7ef4db452203 bac97f7ddd495366de149d355b7b4e87 { 'aliquot_tag': 'ALQ_98941cb6', 'gdc_sample_type': 'Primary Tumor' } +C3L-02412.RNA-Seq.genomic.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 8fa186f5-1e4e-45e4-8808-130266fabb62.rna_seq.genomic.gdc_realn.bam 9650787722 BAM genomic harmonized CPTAC3 88970bd0-5bce-4bdd-80c5-dbafec510bfe 432e584388cdc65c2ae5a1f317ced544 { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02412.RNA-Seq.genomic.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 5f5e3a6a-6fc7-4170-b8d3-6c002963a6ce.rna_seq.genomic.gdc_realn.bam 8847890041 BAM genomic harmonized CPTAC3 1a8e4422-6f59-418e-ba19-18bf489bb574 75b8dc8e7a68fe6698b24ff7b26082c9 { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor' } +C3L-02412.RNA-Seq.genomic.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0348170001 0edecbfa-1c71-4919-9e19-8daeb1289aa8.rna_seq.genomic.gdc_realn.bam 7516544451 BAM genomic harmonized CPTAC3 690ccae0-4335-465b-ba62-1a0b005bea31 96f645d9c5a36bc07a0af15c0130475d { 'aliquot_tag': 'ALQ_98941cb6', 'gdc_sample_type': 'Primary Tumor' } +C3L-02412.RNA-Seq.R1_L001.A C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3808109443 FASTQ R1_L001 unaligned CPTAC3 e05c93fc-1e4f-4d51-82a7-58c01816a142 e13d76c2755fe46e1a3732d5027606af { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-02412.RNA-Seq.R1_L007.T C3L-02412 UCEC RNA-Seq tumor CPT0111950006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L007_R1_001.fastq.gz 4005521705 FASTQ R1_L007 unaligned CPTAC3 9e02b72f-5d15-4ebd-ad2d-d90b9cfca76a 673eafb024120c44e529b8a93819edfc { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02412.RNA-Seq.R2_L001.A C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4250017479 FASTQ R2_L001 unaligned CPTAC3 5f1eae01-e250-4622-8fff-f3d8212dcd83 2fdea067e408b8f17364dbd520427f14 { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-02412.RNA-Seq.R2_L007.T C3L-02412 UCEC RNA-Seq tumor CPT0111950006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L007_R2_001.fastq.gz 4333965191 FASTQ R2_L007 unaligned CPTAC3 e52c832f-62e8-4c01-b6f9-6146fff0feb9 221bed5bb5484454d6352c120038cb70 { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02412.RNA-Seq.T C3L-02412 UCEC RNA-Seq tumor CPT0348170001 20210723_P2_F5_WB7988-plate2_S65_R1_001.fastq.gz 4283516048 FASTQ unaligned CPTAC3 bafdfc8b-5a57-4e55-9cbc-19dc6acc211e e5e5c24efba3fd9e2f8ab67cc35e154a +C3L-02412.RNA-Seq.T C3L-02412 UCEC RNA-Seq tumor CPT0348170001 20210723_P2_F5_WB7988-plate2_S65_R2_001.fastq.gz 4395270888 FASTQ unaligned CPTAC3 42caf0f7-a0ee-4535-81eb-f4dd7191aa32 2ac40f59a562764c69c889d84c4da635 +C3L-02412.RNA-Seq.transcriptome.A.hg38 C3L-02412 UCEC RNA-Seq tissue_normal CPT0111980007 8fa186f5-1e4e-45e4-8808-130266fabb62.rna_seq.transcriptome.gdc_realn.bam 10846678957 BAM transcriptome harmonized CPTAC3 a8d9f155-1162-4d30-9c7b-4ef638ecf491 d2a1dfdee628ba36bf3260f7feda5924 { 'aliquot_tag': 'ALQ_ec7acf0e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02412.RNA-Seq.transcriptome.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0111950006 5f5e3a6a-6fc7-4170-b8d3-6c002963a6ce.rna_seq.transcriptome.gdc_realn.bam 11929627883 BAM transcriptome harmonized CPTAC3 44ac63d5-f956-4a4a-aa35-86388f484e72 addce7d06f6767fda02b052f3ab26acb { 'aliquot_tag': 'ALQ_63ed3b29', 'gdc_sample_type': 'Primary Tumor' } +C3L-02412.RNA-Seq.transcriptome.T.hg38 C3L-02412 UCEC RNA-Seq tumor CPT0348170001 0edecbfa-1c71-4919-9e19-8daeb1289aa8.rna_seq.transcriptome.gdc_realn.bam 3703108006 BAM transcriptome harmonized CPTAC3 c84becf0-6c77-4c2e-aa70-e75161b97760 5d868be0b794b20405b933bbd8676dfc { 'aliquot_tag': 'ALQ_98941cb6', 'gdc_sample_type': 'Primary Tumor' } C3L-02412.WGS.A C3L-02412 UCEC WGS tissue_normal CPT0111980005 CPT0111980005.WholeGenome.RP-1303.bam 67748347674 BAM aligned CPTAC3 bf9f82e8-b854-452c-9058-a0fb938323fb aff47e2bfa9f5486faa23edcf7c5eebe { 'aliquot_tag': 'ALQ_274ae22', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02412.WGS.A.hg38 C3L-02412 UCEC WGS tissue_normal CPT0111980005 632fbad2-42a4-4e6b-a489-dcf2cebc65ec_wgs_gdc_realn.bam 101356886901 BAM harmonized CPTAC3 27377076-3b25-4052-9dcf-ae13a93bee25 0302bc12eaa0ff9695d18cd722c84da5 { 'aliquot_tag': 'ALQ_274ae22', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02412.WGS.N C3L-02412 UCEC WGS blood_normal CPT0112860002 CPT0112860002.WholeGenome.RP-1303.bam 58061618568 BAM aligned CPTAC3 4052fdc6-93a6-43fa-ac5b-21b6c5a0b1a4 f506509da25dbd73deaa0511cc9503d8 { 'aliquot_tag': 'ALQ_d9944cd8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10477,23 +11235,27 @@ C3L-02412.WXS.T C3L-02412 UCEC WXS tumor CPT0111950009 CPT0111950009.WholeExome. C3L-02412.WXS.T.hg38 C3L-02412 UCEC WXS tumor CPT0111950009 c6136e6f-066c-4436-ac0f-3890c4f7c0d0_wxs_gdc_realn.bam 31392793713 BAM harmonized CPTAC3 ee68b2a0-2c54-44f7-beec-06649f3d3ff6 bb907a559f54d69f1f8b05ce5d36b333 { 'aliquot_tag': 'ALQ_f35226b8', 'gdc_sample_type': 'Primary Tumor' } C3L-02448.miRNA-Seq.T C3L-02448 UCEC miRNA-Seq tumor CPT0186630025 190508_UNC31-K00269_0215_BH7FYKBBXY_CTCAGA_S40_L002_R1_001.unaln.bam 277878863 BAM unaligned CPTAC3 cb9a266f-f4bf-45b8-8d85-194b0ae73907 02564ccdf3d2bbfe0ab638d364d8c28f { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor' } C3L-02448.miRNA-Seq.T.hg38 C3L-02448 UCEC miRNA-Seq tumor CPT0186630025 070c3400-70de-440a-9804-56ae2d52a92e_mirnaseq_gdc_realn.bam 304278318 BAM harmonized CPTAC3 fca3960b-e3e2-4ce7-98a5-5672cbbe069c 1f94dd9b46599fd8c6e4e7d0fd7a907e { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02448.RNA-Seq.chimeric.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 2e36646e-76d4-49f7-a174-b86925e1b613.rna_seq.chimeric.gdc_realn.bam 34339496 BAM chimeric harmonized CPTAC3 bbe12721-22eb-4ad8-8ae1-8d29e0b05770 4a6fa50cae709c3661a3c25b8bf7cde1 { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02448.RNA-Seq.genomic.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 2e36646e-76d4-49f7-a174-b86925e1b613.rna_seq.genomic.gdc_realn.bam 7919483274 BAM genomic harmonized CPTAC3 b8b80fee-046b-4fd9-9f48-d110e88c2d96 8b6647fb6f7a0b8dc7d0b40682402f38 { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02448.RNA-Seq.R1_L006.T C3L-02448 UCEC RNA-Seq tumor CPT0186630025 190501_UNC31-K00269_0213_BH5JYFBBXY_CGGACAAC-TCCGGATT_S22_L006_R1_001.fastq.gz 3769800668 FASTQ R1_L006 unaligned CPTAC3 0a6b5f61-d040-484a-99ad-4b8886703a69 16f0336ac17ba08b96a107def9c64ae4 { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02448.RNA-Seq.R2_L006.T C3L-02448 UCEC RNA-Seq tumor CPT0186630025 190501_UNC31-K00269_0213_BH5JYFBBXY_CGGACAAC-TCCGGATT_S22_L006_R2_001.fastq.gz 4248680653 FASTQ R2_L006 unaligned CPTAC3 0a542eab-9406-4cee-944f-2ccd797f1b18 10183df69fdceac0984ecad2c4e1e91a { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02448.RNA-Seq.transcriptome.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 2e36646e-76d4-49f7-a174-b86925e1b613.rna_seq.transcriptome.gdc_realn.bam 9235369782 BAM transcriptome harmonized CPTAC3 bdbe76c2-a016-455b-acec-436f7d1cff84 3da6b9ce92e36dd03d2b0703f6656a49 { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02448.RNA-Seq.chimeric.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 a8ac9cbd-c983-45e3-97c8-d4c6865124a6.rna_seq.chimeric.gdc_realn.bam 34327681 BAM chimeric harmonized CPTAC3 907b7581-bd30-4b63-a632-47f7a2496100 1dc530d470fd57609be1d79e654a11c2 { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02448.RNA-Seq.genomic.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 a8ac9cbd-c983-45e3-97c8-d4c6865124a6.rna_seq.genomic.gdc_realn.bam 7920322732 BAM genomic harmonized CPTAC3 bf3baf13-6e56-43d9-8e46-bc0ca461b9c5 7a0a8a0bc5f26b7a4fcbec0ba063f61e { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02448.RNA-Seq.R1_L006.T C3L-02448 UCEC RNA-Seq tumor CPT0186630025 190501_UNC31-K00269_0213_BH5JYFBBXY_CGGACAAC-TCCGGATT_S22_L006_R1_001.fastq.gz 3769800668 FASTQ R1_L006 unaligned CPTAC3 0a6b5f61-d040-484a-99ad-4b8886703a69 16f0336ac17ba08b96a107def9c64ae4 { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02448.RNA-Seq.R2_L006.T C3L-02448 UCEC RNA-Seq tumor CPT0186630025 190501_UNC31-K00269_0213_BH5JYFBBXY_CGGACAAC-TCCGGATT_S22_L006_R2_001.fastq.gz 4248680653 FASTQ R2_L006 unaligned CPTAC3 0a542eab-9406-4cee-944f-2ccd797f1b18 10183df69fdceac0984ecad2c4e1e91a { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-02448.RNA-Seq.transcriptome.T.hg38 C3L-02448 UCEC RNA-Seq tumor CPT0186630025 a8ac9cbd-c983-45e3-97c8-d4c6865124a6.rna_seq.transcriptome.gdc_realn.bam 10549502138 BAM transcriptome harmonized CPTAC3 ef6176fc-4aa6-4bb8-a77d-fe8b4af870d8 a673b3dfc004cc40f212eeb796a172b0 { 'aliquot_tag': 'ALQ_6c2c6ac1', 'gdc_sample_type': 'Primary Tumor' } C3L-02449.DUP_3349db51.WGS.N C3L-02449 UCEC WGS blood_normal CPT0186780002_1 CPT0186780002_1.WholeGenome.RP-1303.bam 87425359700 BAM aligned CPTAC3 a35e4efe-e9c0-46d6-909d-a16cf6c12121 14d152a1d55c71764ed877666290f791 { 'aliquot_tag': 'DUP_3349db51', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } +C3L-02449.DUP_3349db51.WGS.N.hg38 C3L-02449 UCEC WGS blood_normal CPT0186780002_1 608f78f8-a23b-4df9-b3f9-c0824695238d_wgs_gdc_realn.bam 126632110934 BAM harmonized CPTAC3 a8000967-e889-4f9e-b5a6-33ea8297cbc7 2e626cd33498e763e74b765800e3a5bb { 'aliquot_tag': 'DUP_3349db51', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } C3L-02449.MethArray.Green.T C3L-02449 UCEC Methylation Array tumor CPT0186720011 203561620091_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 353c63ab-8785-4cf8-9089-6e5680e188f7 3a229d15e39603410ac6a8b01c38b9eb { 'aliquot_tag': 'ALQ_b650070e', 'gdc_sample_type': 'Primary Tumor' } C3L-02449.MethArray.Red.T C3L-02449 UCEC Methylation Array tumor CPT0186720011 203561620091_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 fa0e0be1-0b58-4d22-8eb2-80f15309dd89 1816c92b01c134c20123032c8c014d4f { 'aliquot_tag': 'ALQ_b650070e', 'gdc_sample_type': 'Primary Tumor' } C3L-02449.miRNA-Seq.T C3L-02449 UCEC miRNA-Seq tumor CPT0186720014 190508_UNC31-K00269_0215_BH7FYKBBXY_GGCTAC_S11_L003_R1_001.unaln.bam 216017080 BAM unaligned CPTAC3 fc630151-931e-46ce-b885-0996856f4a08 15cc6814b2cd72a2d911dfeac309b57d { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor' } C3L-02449.miRNA-Seq.T.hg38 C3L-02449 UCEC miRNA-Seq tumor CPT0186720014 52b3ec42-b93e-4533-b8c2-f07b1a3a6a4f_mirnaseq_gdc_realn.bam 252448578 BAM harmonized CPTAC3 ae766422-a45c-42a3-9e4b-6e1c751c31ec 172f6b7cb6cdf1a4c02fe01c6c58c4d1 { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor' } -C3L-02449.RNA-Seq.chimeric.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 d599767f-71c9-4eaf-824a-90d12422a7ff.rna_seq.chimeric.gdc_realn.bam 37788159 BAM chimeric harmonized CPTAC3 a75fd33e-d8c2-4fca-9011-b3cecdd1bb55 e95e17df7c5372191807651e08491318 { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor' } -C3L-02449.RNA-Seq.genomic.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 d599767f-71c9-4eaf-824a-90d12422a7ff.rna_seq.genomic.gdc_realn.bam 8688450390 BAM genomic harmonized CPTAC3 acab3726-a9ab-4a45-8e93-764e705260cc 39b18815bfeec7ea732a8ab0f5fd739a { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor' } -C3L-02449.RNA-Seq.R1_L008.T C3L-02449 UCEC RNA-Seq tumor CPT0186720014 190523_UNC32-K00270_0176_BH7CW7BBXY_GATCTATC-ATGAGGCT_S31_L008_R1_001.fastq.gz 4129236265 FASTQ R1_L008 unaligned CPTAC3 32193bba-1d22-4c17-b17a-01aae32f3280 6957d3dd8b3023f5336a248c89ce1561 { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor' } -C3L-02449.RNA-Seq.R1_.T C3L-02449 UCEC RNA-Seq tumor CPT0186740001 20210723_P2_B11_WB7988-plate2_S23_R1_001.fastq.gz 5953978764 FASTQ R1_ unaligned CPTAC3 a7794d59-4c2a-4e54-9428-bbc810669a80 b18f778ca68c0f58b00febf36489d7b1 { 'aliquot_tag': 'ALQ_200bc3ef', 'gdc_sample_type': 'Primary Tumor' } -C3L-02449.RNA-Seq.R2_L008.T C3L-02449 UCEC RNA-Seq tumor CPT0186720014 190523_UNC32-K00270_0176_BH7CW7BBXY_GATCTATC-ATGAGGCT_S31_L008_R2_001.fastq.gz 4737807954 FASTQ R2_L008 unaligned CPTAC3 0d3037b1-dfa7-4961-b6f2-59e2e8e73da5 84d82e206ac896a0beecb8d96b6a5e5b { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor' } -C3L-02449.RNA-Seq.R2_.T C3L-02449 UCEC RNA-Seq tumor CPT0186740001 20210723_P2_B11_WB7988-plate2_S23_R2_001.fastq.gz 6081868873 FASTQ R2_ unaligned CPTAC3 e359af4b-e8ff-4ac3-8cbc-7a5bc1ba5f9c c6f293febbefb6613db3234d243f883b { 'aliquot_tag': 'ALQ_200bc3ef', 'gdc_sample_type': 'Primary Tumor' } -C3L-02449.RNA-Seq.transcriptome.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 d599767f-71c9-4eaf-824a-90d12422a7ff.rna_seq.transcriptome.gdc_realn.bam 10037482393 BAM transcriptome harmonized CPTAC3 3cb98bda-6e5a-485e-a76c-c65bb23f4c76 dfec837e5add8cb2012fe4528247676c { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor' } +C3L-02449.RNA-Seq.chimeric.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 c7b8b836-f1bb-4633-9ab6-674d4589cb22.rna_seq.chimeric.gdc_realn.bam 37796385 BAM chimeric harmonized CPTAC3 106a3b4c-79e7-4dea-a58e-38d76c104212 067f0c1cb4928d0be8ee5ba05192ae32 { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor' } +C3L-02449.RNA-Seq.chimeric.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186740001 18fbb758-7e1f-4660-963e-796398ae0314.rna_seq.chimeric.gdc_realn.bam 187234054 BAM chimeric harmonized CPTAC3 9681684f-95cd-4f76-ba61-28cdc3f6f681 bd3f18321e41d57684b1c3faeecf0660 { 'aliquot_tag': 'ALQ_200bc3ef', 'gdc_sample_type': 'Primary Tumor' } +C3L-02449.RNA-Seq.genomic.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 c7b8b836-f1bb-4633-9ab6-674d4589cb22.rna_seq.genomic.gdc_realn.bam 8689945256 BAM genomic harmonized CPTAC3 495fea92-b1d2-4974-84c4-b4f302e65b57 e11c13e2acb9ec7da2f6f456a364e073 { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor' } +C3L-02449.RNA-Seq.genomic.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186740001 18fbb758-7e1f-4660-963e-796398ae0314.rna_seq.genomic.gdc_realn.bam 10091292588 BAM genomic harmonized CPTAC3 05fec7e7-79d2-4478-bed3-e1619a4dd261 e582b84710b7ece8e83906f7962581a3 { 'aliquot_tag': 'ALQ_200bc3ef', 'gdc_sample_type': 'Primary Tumor' } +C3L-02449.RNA-Seq.R1_L008.T C3L-02449 UCEC RNA-Seq tumor CPT0186720014 190523_UNC32-K00270_0176_BH7CW7BBXY_GATCTATC-ATGAGGCT_S31_L008_R1_001.fastq.gz 4129236265 FASTQ R1_L008 unaligned CPTAC3 32193bba-1d22-4c17-b17a-01aae32f3280 6957d3dd8b3023f5336a248c89ce1561 { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02449.RNA-Seq.R2_L008.T C3L-02449 UCEC RNA-Seq tumor CPT0186720014 190523_UNC32-K00270_0176_BH7CW7BBXY_GATCTATC-ATGAGGCT_S31_L008_R2_001.fastq.gz 4737807954 FASTQ R2_L008 unaligned CPTAC3 0d3037b1-dfa7-4961-b6f2-59e2e8e73da5 84d82e206ac896a0beecb8d96b6a5e5b { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-02449.RNA-Seq.T C3L-02449 UCEC RNA-Seq tumor CPT0186740001 20210723_P2_B11_WB7988-plate2_S23_R1_001.fastq.gz 5953978764 FASTQ unaligned CPTAC3 a7794d59-4c2a-4e54-9428-bbc810669a80 b18f778ca68c0f58b00febf36489d7b1 +C3L-02449.RNA-Seq.T C3L-02449 UCEC RNA-Seq tumor CPT0186740001 20210723_P2_B11_WB7988-plate2_S23_R2_001.fastq.gz 6081868873 FASTQ unaligned CPTAC3 e359af4b-e8ff-4ac3-8cbc-7a5bc1ba5f9c c6f293febbefb6613db3234d243f883b +C3L-02449.RNA-Seq.transcriptome.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186720014 c7b8b836-f1bb-4633-9ab6-674d4589cb22.rna_seq.transcriptome.gdc_realn.bam 11380242310 BAM transcriptome harmonized CPTAC3 ce88c6eb-59f5-4895-836d-7953a3b35c55 bfa8bff19c5908eaf4f20bdc04743416 { 'aliquot_tag': 'ALQ_c63af381', 'gdc_sample_type': 'Primary Tumor' } +C3L-02449.RNA-Seq.transcriptome.T.hg38 C3L-02449 UCEC RNA-Seq tumor CPT0186740001 18fbb758-7e1f-4660-963e-796398ae0314.rna_seq.transcriptome.gdc_realn.bam 5897591817 BAM transcriptome harmonized CPTAC3 f1372439-b21a-451d-963b-960b61b5ca73 31289cba3728d6bb70bc8f0065a2cbff { 'aliquot_tag': 'ALQ_200bc3ef', 'gdc_sample_type': 'Primary Tumor' } C3L-02449.WGS.N C3L-02449 UCEC WGS blood_normal CPT0186780002 CPT0186780002.WholeGenome.RP-1303.bam 20744730577 BAM aligned CPTAC3 0ba1abba-4565-4703-893e-dc03520f0c31 b4d068426bff929995d7a51b74a59318 { 'aliquot_tag': 'ALQ_7cf27f54', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02449.WGS.N.hg38 C3L-02449 UCEC WGS blood_normal CPT0186780002 f3a3cb29-ab76-4b95-9d3e-dd4b8b5b1237_wgs_gdc_realn.bam 28658182043 BAM harmonized CPTAC3 ecae7a24-aa78-423e-a70a-362e25e8d306 b7f2edfe5d20344fa38f20c7b2032d6a { 'aliquot_tag': 'ALQ_7cf27f54', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02449.WGS.T C3L-02449 UCEC WGS tumor CPT0186720011 CPT0186720011.WholeGenome.RP-1303.bam 72060076327 BAM aligned CPTAC3 1ed5ff40-ba7a-4ef6-827d-425d77f140b8 bf48ba9b208173c0e45d588da056fbcc { 'aliquot_tag': 'ALQ_b650070e', 'gdc_sample_type': 'Primary Tumor' } @@ -10514,10 +11276,10 @@ C3L-02463.RNA-Seq.chimeric.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal CPT0126200 C3L-02463.RNA-Seq.chimeric.T.hg38 C3L-02463 PDA RNA-Seq tumor CPT0126160007 d21f8282-a29b-4f34-85b2-a22379d11956.rna_seq.chimeric.gdc_realn.bam 189326991 BAM chimeric harmonized CPTAC3 b51b6d2e-c2bc-4ec3-96a7-dfacaf75a500 5e7e5872ad2df37526e4ecdb0e27a278 { 'aliquot_tag': 'ALQ_f431ca6f', 'gdc_sample_type': 'Primary Tumor' } C3L-02463.RNA-Seq.genomic.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 1290d6b7-80a6-480a-b4de-5bd7633d8cc1.rna_seq.genomic.gdc_realn.bam 9127886309 BAM genomic harmonized CPTAC3 6bce3332-f473-4fc6-b22f-658de4f58e03 bdfe7bd49f1e0dfc98cf737658fce75e { 'aliquot_tag': 'ALQ_1a5d6066', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02463.RNA-Seq.genomic.T.hg38 C3L-02463 PDA RNA-Seq tumor CPT0126160007 d21f8282-a29b-4f34-85b2-a22379d11956.rna_seq.genomic.gdc_realn.bam 9941375173 BAM genomic harmonized CPTAC3 523911a0-56d9-4f07-8e7e-b70311188909 d81192da4d25db7a9982c814f943ed59 { 'aliquot_tag': 'ALQ_f431ca6f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02463.RNA-Seq.R1_L001.T C3L-02463 PDA RNA-Seq tumor CPT0126160007 180801_UNC31-K00269_0142_AHW3HKBBXX_GTTTCG_S3_L001_R1_001.fastq.gz 3682714278 FASTQ R1_L001 unaligned CPTAC3 950545ec-e02e-4c64-8b58-8a1918505cad 53d37cc53b7928eac66192cad23d2b77 { 'aliquot_tag': 'ALQ_f431ca6f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02463.RNA-Seq.R1_L004.A C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGTACG_S16_L004_R1_001.fastq.gz 4193574228 FASTQ R1_L004 unaligned CPTAC3 30e3fce0-6014-4930-bad1-76b80c5bf529 a0f7e670b3219cdf65a149c6ea3c5bd9 { 'aliquot_tag': 'ALQ_1a5d6066', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02463.RNA-Seq.R2_L001.T C3L-02463 PDA RNA-Seq tumor CPT0126160007 180801_UNC31-K00269_0142_AHW3HKBBXX_GTTTCG_S3_L001_R2_001.fastq.gz 4046869988 FASTQ R2_L001 unaligned CPTAC3 348dab83-76e4-454e-8880-cd277acefa07 2717257ab862c9ed115850409981d08c { 'aliquot_tag': 'ALQ_f431ca6f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02463.RNA-Seq.R2_L004.A C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGTACG_S16_L004_R2_001.fastq.gz 4669019038 FASTQ R2_L004 unaligned CPTAC3 e1f56e1d-17f4-447b-b60d-0ba0da66268d a13dd1973cf7a78ddc4ec26cdc054004 { 'aliquot_tag': 'ALQ_1a5d6066', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02463.RNA-Seq.R1_L001.T C3L-02463 PDA RNA-Seq tumor CPT0126160007 180801_UNC31-K00269_0142_AHW3HKBBXX_GTTTCG_S3_L001_R1_001.fastq.gz 3682714278 FASTQ R1_L001 unaligned CPTAC3 950545ec-e02e-4c64-8b58-8a1918505cad 53d37cc53b7928eac66192cad23d2b77 { 'aliquot_tag': 'ALQ_f431ca6f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02463.RNA-Seq.R1_L004.A C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGTACG_S16_L004_R1_001.fastq.gz 4193574228 FASTQ R1_L004 unaligned CPTAC3 30e3fce0-6014-4930-bad1-76b80c5bf529 a0f7e670b3219cdf65a149c6ea3c5bd9 { 'aliquot_tag': 'ALQ_1a5d6066', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02463.RNA-Seq.R2_L001.T C3L-02463 PDA RNA-Seq tumor CPT0126160007 180801_UNC31-K00269_0142_AHW3HKBBXX_GTTTCG_S3_L001_R2_001.fastq.gz 4046869988 FASTQ R2_L001 unaligned CPTAC3 348dab83-76e4-454e-8880-cd277acefa07 2717257ab862c9ed115850409981d08c { 'aliquot_tag': 'ALQ_f431ca6f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02463.RNA-Seq.R2_L004.A C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 180516_UNC31-K00269_0129_AHTWLFBBXX_CGTACG_S16_L004_R2_001.fastq.gz 4669019038 FASTQ R2_L004 unaligned CPTAC3 e1f56e1d-17f4-447b-b60d-0ba0da66268d a13dd1973cf7a78ddc4ec26cdc054004 { 'aliquot_tag': 'ALQ_1a5d6066', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-02463.RNA-Seq.transcriptome.A.hg38 C3L-02463 PDA RNA-Seq tissue_normal CPT0126200009 1290d6b7-80a6-480a-b4de-5bd7633d8cc1.rna_seq.transcriptome.gdc_realn.bam 11444816490 BAM transcriptome harmonized CPTAC3 97858b61-8e71-4cdd-92f0-fec406b5279a d69062d4c513b2c00222416a391c77c5 { 'aliquot_tag': 'ALQ_1a5d6066', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02463.RNA-Seq.transcriptome.T.hg38 C3L-02463 PDA RNA-Seq tumor CPT0126160007 d21f8282-a29b-4f34-85b2-a22379d11956.rna_seq.transcriptome.gdc_realn.bam 9909207707 BAM transcriptome harmonized CPTAC3 85460c26-60c6-43fe-acfb-a9cde51424ee a97d65b6109a2c47b31b0c0cd747f848 { 'aliquot_tag': 'ALQ_f431ca6f', 'gdc_sample_type': 'Primary Tumor' } C3L-02463.Targeted.T C3L-02463 PDA Targeted Sequencing tumor CPT0126160010_1 CPT0126160010_1.CustomSelection.RP-1303.PDO-18786.bam 4180157917 BAM aligned CPTAC3 523d7b2e-5064-4b65-8ba3-b53d16dfcd90 54665ccaae7e2e80e2725c9e8372eaf6 { 'aliquot_tag': 'ALQ_9038a49', 'gdc_sample_type': 'Primary Tumor' } @@ -10542,8 +11304,8 @@ C3L-02465.miRNA-Seq.T C3L-02465 GBM miRNA-Seq tumor CPT0125570006 181119_UNC31-K C3L-02465.miRNA-Seq.T.hg38 C3L-02465 GBM miRNA-Seq tumor CPT0125570006 6c914cdc-ab48-4850-abec-484fa824f9f3_mirnaseq_gdc_realn.bam 237047784 BAM harmonized CPTAC3 08153e95-29f7-4524-a61d-21a46b3efa5e 701b0f2a2ba91b07db4b11dbf174119a { 'aliquot_tag': 'ALQ_142f8bc2', 'gdc_sample_type': 'Primary Tumor' } C3L-02465.RNA-Seq.chimeric.T.hg38 C3L-02465 GBM RNA-Seq tumor CPT0125570006 430be898-3654-437c-9b75-4193bd2106cc.rna_seq.chimeric.gdc_realn.bam 38635056 BAM chimeric harmonized CPTAC3 20622fe3-27e7-4593-b111-0f38d6fef4d0 238304c73720401ac2c9fa9887d7bc42 { 'aliquot_tag': 'ALQ_142f8bc2', 'gdc_sample_type': 'Primary Tumor' } C3L-02465.RNA-Seq.genomic.T.hg38 C3L-02465 GBM RNA-Seq tumor CPT0125570006 430be898-3654-437c-9b75-4193bd2106cc.rna_seq.genomic.gdc_realn.bam 9888082603 BAM genomic harmonized CPTAC3 b155c434-0075-4887-8abb-718adfceec66 85e179abcceb8a4fc9cc4f98aa203006 { 'aliquot_tag': 'ALQ_142f8bc2', 'gdc_sample_type': 'Primary Tumor' } -C3L-02465.RNA-Seq.R1_L005.T C3L-02465 GBM RNA-Seq tumor CPT0125570006 180508_UNC31-K00269_0128_BHTY7KBBXX_CCGTCC_S20_L005_R1_001.fastq.gz 4650716263 FASTQ R1_L005 unaligned CPTAC3 ac4f58b0-4652-4aba-bba6-62f1cd4660f4 7f15be544a0612549fdc502c850b08c8 { 'aliquot_tag': 'ALQ_142f8bc2', 'gdc_sample_type': 'Primary Tumor' } -C3L-02465.RNA-Seq.R2_L005.T C3L-02465 GBM RNA-Seq tumor CPT0125570006 180508_UNC31-K00269_0128_BHTY7KBBXX_CCGTCC_S20_L005_R2_001.fastq.gz 4773241781 FASTQ R2_L005 unaligned CPTAC3 806543ec-69d2-4461-8a3f-bbd40a94ddb2 4af94a62652582e8425fe1f32a4871ea { 'aliquot_tag': 'ALQ_142f8bc2', 'gdc_sample_type': 'Primary Tumor' } +C3L-02465.RNA-Seq.R1_L005.T C3L-02465 GBM RNA-Seq tumor CPT0125570006 180508_UNC31-K00269_0128_BHTY7KBBXX_CCGTCC_S20_L005_R1_001.fastq.gz 4650716263 FASTQ R1_L005 unaligned CPTAC3 ac4f58b0-4652-4aba-bba6-62f1cd4660f4 7f15be544a0612549fdc502c850b08c8 { 'aliquot_tag': 'ALQ_142f8bc2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02465.RNA-Seq.R2_L005.T C3L-02465 GBM RNA-Seq tumor CPT0125570006 180508_UNC31-K00269_0128_BHTY7KBBXX_CCGTCC_S20_L005_R2_001.fastq.gz 4773241781 FASTQ R2_L005 unaligned CPTAC3 806543ec-69d2-4461-8a3f-bbd40a94ddb2 4af94a62652582e8425fe1f32a4871ea { 'aliquot_tag': 'ALQ_142f8bc2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-02465.RNA-Seq.transcriptome.T.hg38 C3L-02465 GBM RNA-Seq tumor CPT0125570006 430be898-3654-437c-9b75-4193bd2106cc.rna_seq.transcriptome.gdc_realn.bam 12223934142 BAM transcriptome harmonized CPTAC3 5dfa7ecc-2178-498e-bbab-d9544c59c0e0 b6f7434ebe2a49532d5795a90ad6f665 { 'aliquot_tag': 'ALQ_142f8bc2', 'gdc_sample_type': 'Primary Tumor' } C3L-02465.WGS.N C3L-02465 GBM WGS blood_normal CPT0124250002 CPT0124250002.WholeGenome.RP-1303.bam 68413640457 BAM aligned CPTAC3 b9555383-4d63-4ec0-ac43-9fe6f82783a2 8730eede3469e5c135bf62c9e03eb627 { 'aliquot_tag': 'ALQ_d2f027b7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02465.WGS.N.hg38 C3L-02465 GBM WGS blood_normal CPT0124250002 f1a6dc62-ade8-4e25-bcf7-752ecbc4f7dc_wgs_gdc_realn.bam 100401110014 BAM harmonized CPTAC3 28431047-9ed6-4c05-85be-cca99883ae97 28f9a67bd04630059a80a8bd1347d849 { 'aliquot_tag': 'ALQ_d2f027b7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10559,18 +11321,21 @@ C3L-02468.miRNA-Seq.A C3L-02468 UCEC miRNA-Seq tissue_normal CPT0126010009 19013 C3L-02468.miRNA-Seq.A.hg38 C3L-02468 UCEC miRNA-Seq tissue_normal CPT0126010009 56bf9fe1-d9b3-44a0-87f1-168e2671859c_mirnaseq_gdc_realn.bam 237406690 BAM harmonized CPTAC3 1d6d86bc-c301-48ab-a2be-9d5c8a518581 2893bb423ef8e6021b3656c466f679c4 { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02468.miRNA-Seq.T C3L-02468 UCEC miRNA-Seq tumor CPT0126000006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGGCG_S33_L003_R1_001.unaln.bam 190674497 BAM unaligned CPTAC3 95064159-5fbc-4b6f-8330-372f46046916 822fa399bcf1228aa3091db4761c820f { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor' } C3L-02468.miRNA-Seq.T.hg38 C3L-02468 UCEC miRNA-Seq tumor CPT0126000006 e032644a-8d97-4595-a4e9-47e4672d83cf_mirnaseq_gdc_realn.bam 214708805 BAM harmonized CPTAC3 93b32cd5-d554-4c0c-af3e-fed0db538757 2148d3b35503f159afb725c3a914c182 { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02468.RNA-Seq.chimeric.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 f751a956-92a3-449d-890e-724d70307d93.rna_seq.chimeric.gdc_realn.bam 45546209 BAM chimeric harmonized CPTAC3 427afd09-0395-4d2d-a6a7-dadb1fbf10e1 4f5fae7110b084d944ad05b3ba7aef7c { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02468.RNA-Seq.chimeric.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 05e17e22-e0c1-44c1-8368-dc6ed1855d40.rna_seq.chimeric.gdc_realn.bam 31801389 BAM chimeric harmonized CPTAC3 ff3dabaf-9236-42b8-ba33-1ea119610063 2113fd1b02cef587fddc52d4fdf672de { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02468.RNA-Seq.genomic.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 f751a956-92a3-449d-890e-724d70307d93.rna_seq.genomic.gdc_realn.bam 8875126232 BAM genomic harmonized CPTAC3 50b8a754-ad56-4e16-b808-83daa285f8b6 d18653aceda014cbda2c0f77962e72c8 { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02468.RNA-Seq.genomic.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 05e17e22-e0c1-44c1-8368-dc6ed1855d40.rna_seq.genomic.gdc_realn.bam 7733402708 BAM genomic harmonized CPTAC3 00322527-c829-490d-85c7-5ccea65dc7ae e006f26eddbbadd5e49598370ef111ce { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02468.RNA-Seq.R1_L002.T C3L-02468 UCEC RNA-Seq tumor CPT0126000006 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3538324955 FASTQ R1_L002 unaligned CPTAC3 03e743a3-9e1d-4b19-876d-8aca16db36a6 a5a2dd99cfa466f9a06ba3ed342a18e3 { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02468.RNA-Seq.R1_L008.A C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 190125_UNC31-K00269_0184_AH3M32BBXY_CCGTCC_S24_L008_R1_001.fastq.gz 4057572434 FASTQ R1_L008 unaligned CPTAC3 58ab7a47-f657-44d3-b62b-41bf5f3810c3 91e7cdca99148d65933dd387f8b5617b { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02468.RNA-Seq.R1_.T C3L-02468 UCEC RNA-Seq tumor CPT0126060001 20210714_P1_B6_WB7988_plate1_S18_R1_001.fastq.gz 8099689554 FASTQ R1_ unaligned CPTAC3 0d845a2c-7ceb-4d1d-9b29-11cf261142fc bb3a0cadd33e1da4ce820a5799f1a4b1 { 'aliquot_tag': 'ALQ_d60ebcff', 'gdc_sample_type': 'Primary Tumor' } -C3L-02468.RNA-Seq.R2_L002.T C3L-02468 UCEC RNA-Seq tumor CPT0126000006 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3897501067 FASTQ R2_L002 unaligned CPTAC3 68db2989-e11f-43ac-9aa3-49c7423d98d2 6c0fdac19d36be666ed24199782aa34c { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02468.RNA-Seq.R2_L008.A C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 190125_UNC31-K00269_0184_AH3M32BBXY_CCGTCC_S24_L008_R2_001.fastq.gz 4140807993 FASTQ R2_L008 unaligned CPTAC3 8d47d4f6-0bad-42d0-acb6-194bf1d0b874 4bbe198c4d9732527d83b6bfa9f1a916 { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02468.RNA-Seq.R2_.T C3L-02468 UCEC RNA-Seq tumor CPT0126060001 20210714_P1_B6_WB7988_plate1_S18_R2_001.fastq.gz 8517453393 FASTQ R2_ unaligned CPTAC3 a65d8e0f-7103-47b1-802b-56105978deb6 e000a5a64ba846b10ee412f785f6e366 { 'aliquot_tag': 'ALQ_d60ebcff', 'gdc_sample_type': 'Primary Tumor' } -C3L-02468.RNA-Seq.transcriptome.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 f751a956-92a3-449d-890e-724d70307d93.rna_seq.transcriptome.gdc_realn.bam 9704010543 BAM transcriptome harmonized CPTAC3 7f8a2981-988c-4d4c-aaac-d9e9346e20f8 0e47f284ec61d32662f3bf79764a96ea { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02468.RNA-Seq.transcriptome.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 05e17e22-e0c1-44c1-8368-dc6ed1855d40.rna_seq.transcriptome.gdc_realn.bam 8099733506 BAM transcriptome harmonized CPTAC3 d42abce8-f0fa-4578-b1ac-7394c7e26172 30eb32e821bea848c817c1b71ccade00 { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02468.RNA-Seq.chimeric.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 3a2a6f02-e412-44c1-9194-f9bd4b09fae5.rna_seq.chimeric.gdc_realn.bam 45524821 BAM chimeric harmonized CPTAC3 759da733-2d79-49cb-8daa-74d3af6cc798 9a41d1a5eb2edc07f495f55d14ff3ecb { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02468.RNA-Seq.chimeric.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 06a6108d-e6d2-4c72-8b1f-a9ee7e492987.rna_seq.chimeric.gdc_realn.bam 31781777 BAM chimeric harmonized CPTAC3 93d03dca-7551-4ea5-92c7-ce742b19d328 d6c67c0a8eb3b6ca76198039911e800d { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02468.RNA-Seq.chimeric.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126060001 f666f905-9fe7-493b-90e9-7659cf64d2fb.rna_seq.chimeric.gdc_realn.bam 217043747 BAM chimeric harmonized CPTAC3 698607e2-e428-4c8d-a4b9-c24df6709b56 6f40891fb224ab29ed00a2b0207993c8 { 'aliquot_tag': 'ALQ_d60ebcff', 'gdc_sample_type': 'Primary Tumor' } +C3L-02468.RNA-Seq.genomic.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 3a2a6f02-e412-44c1-9194-f9bd4b09fae5.rna_seq.genomic.gdc_realn.bam 8876468660 BAM genomic harmonized CPTAC3 06ce6265-3063-470d-9681-d87f3ff3843f 780293ea2b512f24c64ac2846db19b0d { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02468.RNA-Seq.genomic.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 06a6108d-e6d2-4c72-8b1f-a9ee7e492987.rna_seq.genomic.gdc_realn.bam 7734627697 BAM genomic harmonized CPTAC3 ed417ff2-ae7b-429c-ab9c-64362feeb7ea e413a9a2a44c969a76ec189a7d8ecca8 { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02468.RNA-Seq.genomic.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126060001 f666f905-9fe7-493b-90e9-7659cf64d2fb.rna_seq.genomic.gdc_realn.bam 12878070423 BAM genomic harmonized CPTAC3 8fd94035-05ad-48e1-ab1f-7dc67b592c23 5ee24861308aa013072a3e238fa9c6a1 { 'aliquot_tag': 'ALQ_d60ebcff', 'gdc_sample_type': 'Primary Tumor' } +C3L-02468.RNA-Seq.R1_L002.T C3L-02468 UCEC RNA-Seq tumor CPT0126000006 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3538324955 FASTQ R1_L002 unaligned CPTAC3 03e743a3-9e1d-4b19-876d-8aca16db36a6 a5a2dd99cfa466f9a06ba3ed342a18e3 { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02468.RNA-Seq.R1_L008.A C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 190125_UNC31-K00269_0184_AH3M32BBXY_CCGTCC_S24_L008_R1_001.fastq.gz 4057572434 FASTQ R1_L008 unaligned CPTAC3 58ab7a47-f657-44d3-b62b-41bf5f3810c3 91e7cdca99148d65933dd387f8b5617b { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02468.RNA-Seq.R2_L002.T C3L-02468 UCEC RNA-Seq tumor CPT0126000006 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3897501067 FASTQ R2_L002 unaligned CPTAC3 68db2989-e11f-43ac-9aa3-49c7423d98d2 6c0fdac19d36be666ed24199782aa34c { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-02468.RNA-Seq.R2_L008.A C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 190125_UNC31-K00269_0184_AH3M32BBXY_CCGTCC_S24_L008_R2_001.fastq.gz 4140807993 FASTQ R2_L008 unaligned CPTAC3 8d47d4f6-0bad-42d0-acb6-194bf1d0b874 4bbe198c4d9732527d83b6bfa9f1a916 { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02468.RNA-Seq.T C3L-02468 UCEC RNA-Seq tumor CPT0126060001 20210714_P1_B6_WB7988_plate1_S18_R1_001.fastq.gz 8099689554 FASTQ unaligned CPTAC3 0d845a2c-7ceb-4d1d-9b29-11cf261142fc bb3a0cadd33e1da4ce820a5799f1a4b1 +C3L-02468.RNA-Seq.T C3L-02468 UCEC RNA-Seq tumor CPT0126060001 20210714_P1_B6_WB7988_plate1_S18_R2_001.fastq.gz 8517453393 FASTQ unaligned CPTAC3 a65d8e0f-7103-47b1-802b-56105978deb6 e000a5a64ba846b10ee412f785f6e366 +C3L-02468.RNA-Seq.transcriptome.A.hg38 C3L-02468 UCEC RNA-Seq tissue_normal CPT0126010009 3a2a6f02-e412-44c1-9194-f9bd4b09fae5.rna_seq.transcriptome.gdc_realn.bam 11065543007 BAM transcriptome harmonized CPTAC3 361624f0-58f2-476d-9ae1-1e3dd848870d 735f917adfe9343012ed98204dc062a4 { 'aliquot_tag': 'ALQ_6af5e8dd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02468.RNA-Seq.transcriptome.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126000006 06a6108d-e6d2-4c72-8b1f-a9ee7e492987.rna_seq.transcriptome.gdc_realn.bam 9229055499 BAM transcriptome harmonized CPTAC3 ec87a02a-a963-4749-9f43-542bbebc7da2 9ad98133bb6b78d5580eae18c89da35c { 'aliquot_tag': 'ALQ_c72adcfc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02468.RNA-Seq.transcriptome.T.hg38 C3L-02468 UCEC RNA-Seq tumor CPT0126060001 f666f905-9fe7-493b-90e9-7659cf64d2fb.rna_seq.transcriptome.gdc_realn.bam 7767152690 BAM transcriptome harmonized CPTAC3 42dff721-f48b-4f09-8359-d202e6f18dd1 1d6d1ca3828f5f0c9145bfc92d229774 { 'aliquot_tag': 'ALQ_d60ebcff', 'gdc_sample_type': 'Primary Tumor' } C3L-02468.WGS.A C3L-02468 UCEC WGS tissue_normal CPT0126010006 CPT0126010006.WholeGenome.RP-1303.bam 65084689239 BAM aligned CPTAC3 66fceed9-4290-485f-b442-440082ff46ce 7c7ffa8a663c74593b74633eb0e9d520 { 'aliquot_tag': 'ALQ_fa4af54c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02468.WGS.A.hg38 C3L-02468 UCEC WGS tissue_normal CPT0126010006 52c4f856-6e69-4ad8-b8c1-edae35bdf6a2_wgs_gdc_realn.bam 95958803137 BAM harmonized CPTAC3 e633e2a1-334f-4b7d-a19f-fcd155b6cdbd 4a95fdff250ec7855c88549ca8b6ac8f { 'aliquot_tag': 'ALQ_fa4af54c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02468.WGS.N C3L-02468 UCEC WGS blood_normal CPT0124280002 CPT0124280002.WholeGenome.RP-1303.bam 61149041857 BAM aligned CPTAC3 9445c7a2-c585-4a52-b773-d9469fd14907 538ea5270bc598e8b27041b886622cc4 { 'aliquot_tag': 'ALQ_2a60e306', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10589,8 +11354,8 @@ C3L-02504.miRNA-Seq.T C3L-02504 GBM miRNA-Seq tumor CPT0175060009 181113_UNC31-K C3L-02504.miRNA-Seq.T.hg38 C3L-02504 GBM miRNA-Seq tumor CPT0175060009 3c4160dd-7b99-4540-ba81-87bd64d21188_mirnaseq_gdc_realn.bam 336421967 BAM harmonized CPTAC3 26b919db-7001-40a2-8890-f54983a84034 6f700ff65163c358a6031d0c1b1dbf93 { 'aliquot_tag': 'ALQ_a1dd2034', 'gdc_sample_type': 'Primary Tumor' } C3L-02504.RNA-Seq.chimeric.T.hg38 C3L-02504 GBM RNA-Seq tumor CPT0175060009 5a343fc3-252f-4e80-869c-26ae1e471268.rna_seq.chimeric.gdc_realn.bam 37041682 BAM chimeric harmonized CPTAC3 b6a0e339-3f9e-41db-bf44-2b90685acba8 fbfec2be9176d00b2f337d0aafa8c1e0 { 'aliquot_tag': 'ALQ_a1dd2034', 'gdc_sample_type': 'Primary Tumor' } C3L-02504.RNA-Seq.genomic.T.hg38 C3L-02504 GBM RNA-Seq tumor CPT0175060009 5a343fc3-252f-4e80-869c-26ae1e471268.rna_seq.genomic.gdc_realn.bam 8834070426 BAM genomic harmonized CPTAC3 ab410031-560c-428a-9f17-c8ff78f960d8 6788bbd05ced70b88aff48f48de6038a { 'aliquot_tag': 'ALQ_a1dd2034', 'gdc_sample_type': 'Primary Tumor' } -C3L-02504.RNA-Seq.R1_L007.T C3L-02504 GBM RNA-Seq tumor CPT0175060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GGCTAC_S26_L007_R1_001.fastq.gz 3824763022 FASTQ R1_L007 unaligned CPTAC3 610f16a0-bf50-479f-879e-175a725fbca8 6fbc82dca5205d8c415a2733a2dc9f22 { 'aliquot_tag': 'ALQ_a1dd2034', 'gdc_sample_type': 'Primary Tumor' } -C3L-02504.RNA-Seq.R2_L007.T C3L-02504 GBM RNA-Seq tumor CPT0175060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GGCTAC_S26_L007_R2_001.fastq.gz 4331599960 FASTQ R2_L007 unaligned CPTAC3 03bfaa3f-e68a-46a5-90e3-5af109ded101 fb515e04a05623ed0ccd3dc2ce47c0b1 { 'aliquot_tag': 'ALQ_a1dd2034', 'gdc_sample_type': 'Primary Tumor' } +C3L-02504.RNA-Seq.R1_L007.T C3L-02504 GBM RNA-Seq tumor CPT0175060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GGCTAC_S26_L007_R1_001.fastq.gz 3824763022 FASTQ R1_L007 unaligned CPTAC3 610f16a0-bf50-479f-879e-175a725fbca8 6fbc82dca5205d8c415a2733a2dc9f22 { 'aliquot_tag': 'ALQ_a1dd2034', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02504.RNA-Seq.R2_L007.T C3L-02504 GBM RNA-Seq tumor CPT0175060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GGCTAC_S26_L007_R2_001.fastq.gz 4331599960 FASTQ R2_L007 unaligned CPTAC3 03bfaa3f-e68a-46a5-90e3-5af109ded101 fb515e04a05623ed0ccd3dc2ce47c0b1 { 'aliquot_tag': 'ALQ_a1dd2034', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-02504.RNA-Seq.transcriptome.T.hg38 C3L-02504 GBM RNA-Seq tumor CPT0175060009 5a343fc3-252f-4e80-869c-26ae1e471268.rna_seq.transcriptome.gdc_realn.bam 9718559532 BAM transcriptome harmonized CPTAC3 9ab37241-46f3-48f0-9f13-7761e32c0241 edaa87925b6d70852110462c7f3a577f { 'aliquot_tag': 'ALQ_a1dd2034', 'gdc_sample_type': 'Primary Tumor' } C3L-02504.WGS.N C3L-02504 GBM WGS blood_normal CPT0175520002 CPT0175520002.WholeGenome.RP-1303.bam 64059792273 BAM aligned CPTAC3 f2d58309-c05c-4593-8ce5-a71a291680d3 3c642f9ccc3e463567f18facd684c8c8 { 'aliquot_tag': 'ALQ_9342cecf', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02504.WGS.N.hg38 C3L-02504 GBM WGS blood_normal CPT0175520002 40f6448c-51b7-499e-8c86-300966f87b99_wgs_gdc_realn.bam 91176818503 BAM harmonized CPTAC3 d4ff5445-c045-4bd0-80da-bbfb01175a2b fcb2cc8536c8271a39bb0f817e59b313 { 'aliquot_tag': 'ALQ_9342cecf', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10611,11 +11376,11 @@ C3L-02508.miRNA-Seq.T.hg38 C3L-02508 LUAD miRNA-Seq tumor CPT0125810006 938e1712 C3L-02508.RNA-Seq.chimeric.A.hg38 C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 67516021-2a0d-4ad2-9c4d-5d7e85d3ac0f.rna_seq.chimeric.gdc_realn.bam 60248610 BAM chimeric harmonized CPTAC3 bdc420f5-93e5-4e40-8beb-7910267fe0d3 21def2b03a1f730de7043d5a90c9b004 { 'aliquot_tag': 'ALQ_5d313edc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02508.RNA-Seq.chimeric.T.hg38 C3L-02508 LUAD RNA-Seq tumor CPT0125810006 8c82cbeb-adf2-4d75-9698-21549c400770.rna_seq.chimeric.gdc_realn.bam 79200908 BAM chimeric harmonized CPTAC3 48993da0-76d5-423c-9ae6-e04cb5eb6c6c 9f37c147045847abba58d7291ff87136 { 'aliquot_tag': 'ALQ_27f16dbc', 'gdc_sample_type': 'Primary Tumor' } C3L-02508.RNA-Seq.genomic.A.hg38 C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 67516021-2a0d-4ad2-9c4d-5d7e85d3ac0f.rna_seq.genomic.gdc_realn.bam 8840913347 BAM genomic harmonized CPTAC3 dff0b361-72d9-4f9c-9981-5a5b437aab8f 5c882511f019469cf30a3496a515fac2 { 'aliquot_tag': 'ALQ_5d313edc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02508.RNA-Seq.genomic.T.hg38 C3L-02508 LUAD RNA-Seq tumor CPT0125810006 8c82cbeb-adf2-4d75-9698-21549c400770.rna_seq.genomic.gdc_realn.bam 9514060873 BAM genomic harmonized CPTAC3 7ff755a2-4b7a-4580-919a-1568041352f5 364874893e7b9756dbd4e11b12680f92 { 'aliquot_tag': 'ALQ_27f16dbc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02508.RNA-Seq.R1_L002.A C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L002_R1_001.fastq.gz 4226756178 FASTQ R1_L002 unaligned CPTAC3 754e4fa4-7970-4f97-927b-c5554a581b1f 544dd274ec2a095881632b18dc95df44 { 'aliquot_tag': 'ALQ_5d313edc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02508.RNA-Seq.R1_L004.T C3L-02508 LUAD RNA-Seq tumor CPT0125810006 171109_UNC31-K00269_0091_BHMFGTBBXX_GAGTGG_S13_L004_R1_001.fastq.gz 3978809521 FASTQ R1_L004 unaligned CPTAC3 051c1a4d-3903-4116-96b0-2b43064c545a d8107c5c8d830706f7edd251d7469d74 { 'aliquot_tag': 'ALQ_27f16dbc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02508.RNA-Seq.R2_L002.A C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L002_R2_001.fastq.gz 4225613884 FASTQ R2_L002 unaligned CPTAC3 c62c71c6-583b-4436-a075-f79dc12be2ff c47370937b7c6eb683be76a7a28b71e5 { 'aliquot_tag': 'ALQ_5d313edc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02508.RNA-Seq.R2_L004.T C3L-02508 LUAD RNA-Seq tumor CPT0125810006 171109_UNC31-K00269_0091_BHMFGTBBXX_GAGTGG_S13_L004_R2_001.fastq.gz 4504315558 FASTQ R2_L004 unaligned CPTAC3 072ecd6f-d4b8-4559-83fb-6e11d63c5c40 538ea4bc16b523883fa3013d6df1f492 { 'aliquot_tag': 'ALQ_27f16dbc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02508.RNA-Seq.genomic.T.hg38 C3L-02508 LUAD RNA-Seq tumor CPT0125810006 8c82cbeb-adf2-4d75-9698-21549c400770.rna_seq.genomic.gdc_realn.bam 9514060873 BAM genomic harmonized CPTAC3 568682b4-7cbb-407e-ae6b-9984fea69a68 364874893e7b9756dbd4e11b12680f92 { 'aliquot_tag': 'ALQ_27f16dbc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02508.RNA-Seq.R1_L002.A C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L002_R1_001.fastq.gz 4226756178 FASTQ R1_L002 unaligned CPTAC3 754e4fa4-7970-4f97-927b-c5554a581b1f 544dd274ec2a095881632b18dc95df44 { 'aliquot_tag': 'ALQ_5d313edc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-02508.RNA-Seq.R1_L004.T C3L-02508 LUAD RNA-Seq tumor CPT0125810006 171109_UNC31-K00269_0091_BHMFGTBBXX_GAGTGG_S13_L004_R1_001.fastq.gz 3978809521 FASTQ R1_L004 unaligned CPTAC3 051c1a4d-3903-4116-96b0-2b43064c545a d8107c5c8d830706f7edd251d7469d74 { 'aliquot_tag': 'ALQ_27f16dbc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02508.RNA-Seq.R2_L002.A C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L002_R2_001.fastq.gz 4225613884 FASTQ R2_L002 unaligned CPTAC3 c62c71c6-583b-4436-a075-f79dc12be2ff c47370937b7c6eb683be76a7a28b71e5 { 'aliquot_tag': 'ALQ_5d313edc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-02508.RNA-Seq.R2_L004.T C3L-02508 LUAD RNA-Seq tumor CPT0125810006 171109_UNC31-K00269_0091_BHMFGTBBXX_GAGTGG_S13_L004_R2_001.fastq.gz 4504315558 FASTQ R2_L004 unaligned CPTAC3 072ecd6f-d4b8-4559-83fb-6e11d63c5c40 538ea4bc16b523883fa3013d6df1f492 { 'aliquot_tag': 'ALQ_27f16dbc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-02508.RNA-Seq.transcriptome.A.hg38 C3L-02508 LUAD RNA-Seq tissue_normal CPT0125830006 67516021-2a0d-4ad2-9c4d-5d7e85d3ac0f.rna_seq.transcriptome.gdc_realn.bam 9458256276 BAM transcriptome harmonized CPTAC3 cd2e9c8c-bf12-481d-a632-5215f7767d40 267719625051ea20d6dc464295e75c76 { 'aliquot_tag': 'ALQ_5d313edc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02508.RNA-Seq.transcriptome.T.hg38 C3L-02508 LUAD RNA-Seq tumor CPT0125810006 8c82cbeb-adf2-4d75-9698-21549c400770.rna_seq.transcriptome.gdc_realn.bam 14028507605 BAM transcriptome harmonized CPTAC3 0ae7d5e9-a70f-478a-a552-8cd0bb5bee37 ad2bac014f1b978c749fa9e781b9e8f8 { 'aliquot_tag': 'ALQ_27f16dbc', 'gdc_sample_type': 'Primary Tumor' } C3L-02508.WGS.A C3L-02508 LUAD WGS tissue_normal CPT0125830009 CPT0125830009.WholeGenome.RP-1303.bam 60298653057 BAM aligned CPTAC3 1102d0b1-cdd7-4f7e-80d4-35de9f2875ba e71cdfdcba7aca01b8b03f45f5645651 { 'aliquot_tag': 'ALQ_cd8e234d', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -10638,16 +11403,16 @@ C3L-02513.miRNA-Seq.A C3L-02513 LUAD miRNA-Seq tissue_normal CPT0210250009 19072 C3L-02513.miRNA-Seq.A.hg38 C3L-02513 LUAD miRNA-Seq tissue_normal CPT0210250009 de550522-e5de-4ade-931c-98ded5889498_mirnaseq_gdc_realn.bam 253883690 BAM harmonized CPTAC3 fa7eb2b1-e61a-409b-85b0-0eee93a09ec3 26aaf4f6e3c36b58d9fa361caaadd54c { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02513.miRNA-Seq.T C3L-02513 LUAD miRNA-Seq tumor CPT0210240009 190722_UNC31-K00269_0234_AH7VGTBBXY_TAGCTT_S6_L005_R1_001.unaln.bam 249837355 BAM unaligned CPTAC3 7fc73644-6030-44bb-94be-e68ded9c59f3 ef395630cef631d154468a626b751490 { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor' } C3L-02513.miRNA-Seq.T.hg38 C3L-02513 LUAD miRNA-Seq tumor CPT0210240009 104372e6-69d4-485c-913b-7769b529d99c_mirnaseq_gdc_realn.bam 279291587 BAM harmonized CPTAC3 a4f8b867-e880-4a11-9077-693487edb01e e526a05dcca679728f790faddbd4de0d { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02513.RNA-Seq.chimeric.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 cdbb6b90-0e6b-4e23-b3fe-796b52e65ad3.rna_seq.chimeric.gdc_realn.bam 35220793 BAM chimeric harmonized CPTAC3 23899aaa-055d-47f2-8097-649ae1087670 fd72eba6c834a5e4c82b3148d707d2e4 { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02513.RNA-Seq.chimeric.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 d8b7c209-71fe-43ac-b51d-0a0879c9e263.rna_seq.chimeric.gdc_realn.bam 37323583 BAM chimeric harmonized CPTAC3 0c4863e1-35a9-4603-ad3a-38c774121814 d9e29361738fe2b5ecfe6c30fd1a1248 { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02513.RNA-Seq.genomic.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 cdbb6b90-0e6b-4e23-b3fe-796b52e65ad3.rna_seq.genomic.gdc_realn.bam 13358435156 BAM genomic harmonized CPTAC3 e69a28c4-a4e6-49f2-8b53-0b0a32ceda7f 852ba78d314045389d7052d6c4697fa5 { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02513.RNA-Seq.genomic.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 d8b7c209-71fe-43ac-b51d-0a0879c9e263.rna_seq.genomic.gdc_realn.bam 13761737725 BAM genomic harmonized CPTAC3 f89e6942-fc02-47d7-ab45-7e1fa4bfb8a3 df5b31c81a1b3280b070add783c34da6 { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02513.RNA-Seq.R1_L001.A C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 190607_UNC32-K00270_0178_AH773TBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4876689160 FASTQ R1_L001 unaligned CPTAC3 02fa8343-2a32-4650-852a-ccdf0199ba6e 0ae5e6037da3d7d151c0bb128ad84dd7 { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02513.RNA-Seq.R1_L004.T C3L-02513 LUAD RNA-Seq tumor CPT0210240009 190607_UNC32-K00270_0179_BH75W2BBXY_GACCTGAA-TTGGTGAG_S14_L004_R1_001.fastq.gz 4680465952 FASTQ R1_L004 unaligned CPTAC3 c9fa24c1-4c5e-4070-af8e-a2e04832e2e7 1d8906cd3c6c00e1da8e8e55ad67486a { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02513.RNA-Seq.R2_L001.A C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 190607_UNC32-K00270_0178_AH773TBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 5218746671 FASTQ R2_L001 unaligned CPTAC3 90e73ecf-0992-4d89-8c1f-430d20dd5297 1789689f5b61076afcc32ea132c910b2 { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02513.RNA-Seq.R2_L004.T C3L-02513 LUAD RNA-Seq tumor CPT0210240009 190607_UNC32-K00270_0179_BH75W2BBXY_GACCTGAA-TTGGTGAG_S14_L004_R2_001.fastq.gz 5124110057 FASTQ R2_L004 unaligned CPTAC3 a79e8d3b-317a-4325-ac41-77ed676fd734 db95d62b4eca9c1ebf57b353137e718b { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02513.RNA-Seq.transcriptome.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 cdbb6b90-0e6b-4e23-b3fe-796b52e65ad3.rna_seq.transcriptome.gdc_realn.bam 8935605643 BAM transcriptome harmonized CPTAC3 5f1b535a-a55a-465f-aef1-b70a3b00edd4 8c29569b74a1817509dd37cfd284f11a { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02513.RNA-Seq.transcriptome.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 d8b7c209-71fe-43ac-b51d-0a0879c9e263.rna_seq.transcriptome.gdc_realn.bam 9628311867 BAM transcriptome harmonized CPTAC3 777bc30d-014d-4d2b-87f8-1e721d37b4bd ce972045e0a0e3ea762390fc227b55bd { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-02513.RNA-Seq.chimeric.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 1731400b-776e-488c-8088-a90c570209cb.rna_seq.chimeric.gdc_realn.bam 35192550 BAM chimeric harmonized CPTAC3 cca24d49-2e82-4b95-a209-4ff0988b06fc e881b3f88e1e56d0b0951ff280fa9385 { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02513.RNA-Seq.chimeric.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 9dd67ffb-40d2-4a27-bd17-b56222d20b42.rna_seq.chimeric.gdc_realn.bam 37320818 BAM chimeric harmonized CPTAC3 805315da-7260-4db6-93bd-3a4502c49e35 b290a6ab8bd81bdcdb7de50287d8c7fa { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-02513.RNA-Seq.genomic.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 1731400b-776e-488c-8088-a90c570209cb.rna_seq.genomic.gdc_realn.bam 13359866335 BAM genomic harmonized CPTAC3 d2431a63-59c9-49ea-8f45-248d5aa5a8b8 5db731c19eef0fc8b2662043abd0ec2b { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02513.RNA-Seq.genomic.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 9dd67ffb-40d2-4a27-bd17-b56222d20b42.rna_seq.genomic.gdc_realn.bam 13762854165 BAM genomic harmonized CPTAC3 dd450945-c98e-41bb-ad90-e877cb007d5e 180fb9d5ea971cd95a3ecd2dba2cc960 { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-02513.RNA-Seq.R1_L001.A C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 190607_UNC32-K00270_0178_AH773TBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4876689160 FASTQ R1_L001 unaligned CPTAC3 02fa8343-2a32-4650-852a-ccdf0199ba6e 0ae5e6037da3d7d151c0bb128ad84dd7 { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-02513.RNA-Seq.R1_L004.T C3L-02513 LUAD RNA-Seq tumor CPT0210240009 190607_UNC32-K00270_0179_BH75W2BBXY_GACCTGAA-TTGGTGAG_S14_L004_R1_001.fastq.gz 4680465952 FASTQ R1_L004 unaligned CPTAC3 c9fa24c1-4c5e-4070-af8e-a2e04832e2e7 1d8906cd3c6c00e1da8e8e55ad67486a { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02513.RNA-Seq.R2_L001.A C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 190607_UNC32-K00270_0178_AH773TBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 5218746671 FASTQ R2_L001 unaligned CPTAC3 90e73ecf-0992-4d89-8c1f-430d20dd5297 1789689f5b61076afcc32ea132c910b2 { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-02513.RNA-Seq.R2_L004.T C3L-02513 LUAD RNA-Seq tumor CPT0210240009 190607_UNC32-K00270_0179_BH75W2BBXY_GACCTGAA-TTGGTGAG_S14_L004_R2_001.fastq.gz 5124110057 FASTQ R2_L004 unaligned CPTAC3 a79e8d3b-317a-4325-ac41-77ed676fd734 db95d62b4eca9c1ebf57b353137e718b { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02513.RNA-Seq.transcriptome.A.hg38 C3L-02513 LUAD RNA-Seq tissue_normal CPT0210250009 1731400b-776e-488c-8088-a90c570209cb.rna_seq.transcriptome.gdc_realn.bam 10078102973 BAM transcriptome harmonized CPTAC3 ab788d89-2b5f-49e6-a095-fc521868ef44 ce7b9336aeaad0cc90c61f8677002ad1 { 'aliquot_tag': 'ALQ_66fe10a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02513.RNA-Seq.transcriptome.T.hg38 C3L-02513 LUAD RNA-Seq tumor CPT0210240009 9dd67ffb-40d2-4a27-bd17-b56222d20b42.rna_seq.transcriptome.gdc_realn.bam 10896734772 BAM transcriptome harmonized CPTAC3 b4454499-fd69-4eba-bb38-e3c787ce2d52 7a38a7e2aae029c37e93760d8c9cd728 { 'aliquot_tag': 'ALQ_3b0fc8ba', 'gdc_sample_type': 'Primary Tumor' } C3L-02513.WGS.N C3L-02513 LUAD WGS blood_normal CPT0217640002 CPT0217640002.WholeGenome.RP-1303.bam 62477287554 BAM aligned CPTAC3 0188e621-7f55-4d70-b4d0-b246d1588cdb c590ca6aecf26649469bfab418280dac { 'aliquot_tag': 'ALQ_f2eb6daa', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02513.WGS.N.hg38 C3L-02513 LUAD WGS blood_normal CPT0217640002 74edafa1-4a50-4008-86e2-a9eb190d6fa8_wgs_gdc_realn.bam 90996855976 BAM harmonized CPTAC3 0716024b-24f0-4611-a802-f225f75aaaab b49ff15baaf06baaf746a2d0626f379c { 'aliquot_tag': 'ALQ_f2eb6daa', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02513.WGS.T C3L-02513 LUAD WGS tumor CPT0210240006 CPT0210240006.WholeGenome.RP-1303.bam 55491391384 BAM aligned CPTAC3 4fe02dc6-7114-48ae-b819-78f303aebd36 6d4636439d275e80654ae59673b663c8 { 'aliquot_tag': 'ALQ_abb0d52b', 'gdc_sample_type': 'Primary Tumor' } @@ -10666,16 +11431,16 @@ C3L-02515.miRNA-Seq.A C3L-02515 LUAD miRNA-Seq tissue_normal CPT0169050009 19071 C3L-02515.miRNA-Seq.A.hg38 C3L-02515 LUAD miRNA-Seq tissue_normal CPT0169050009 f462837a-d82d-48c5-837b-d60f3ba94e24_mirnaseq_gdc_realn.bam 228949801 BAM harmonized CPTAC3 36030b4a-807f-46a5-a99f-b58793d35114 e709c787262563694290491d5412095e { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02515.miRNA-Seq.T C3L-02515 LUAD miRNA-Seq tumor CPT0169040009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTTTCG_S17_L005_R1_001.unaln.bam 192795633 BAM unaligned CPTAC3 68782282-f447-4289-8465-fc77bdf021b5 aae75a98ebf801a8a953e9b775588460 { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor' } C3L-02515.miRNA-Seq.T.hg38 C3L-02515 LUAD miRNA-Seq tumor CPT0169040009 5490b44a-b1ad-4577-876b-45de6f8aa9d2_mirnaseq_gdc_realn.bam 212933420 BAM harmonized CPTAC3 8db2df46-f25e-4167-919b-32d6e07e070c 01c179fbb68b83e113ddab1bb3ae4fdb { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor' } -C3L-02515.RNA-Seq.chimeric.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 0421ec3d-04c3-41f1-b99c-4a72e201e97f.rna_seq.chimeric.gdc_realn.bam 62274000 BAM chimeric harmonized CPTAC3 6341dd48-843c-4d29-868b-4124fd5ad009 4892e48d5a8d20be7f2239d27b10bca0 { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02515.RNA-Seq.chimeric.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 92f312f6-bc8f-4765-a6f1-9af13760a09c.rna_seq.chimeric.gdc_realn.bam 34877849 BAM chimeric harmonized CPTAC3 ad13cd41-958c-4686-91c7-8f3cad2e2c4a a68e686d8b89eeacdb2f31da08f0a1c2 { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor' } -C3L-02515.RNA-Seq.genomic.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 0421ec3d-04c3-41f1-b99c-4a72e201e97f.rna_seq.genomic.gdc_realn.bam 6582391647 BAM genomic harmonized CPTAC3 bb5c3501-2e97-4617-aa7d-fb81b19d68cd 7c9a95bd679eb630772cf4231c639e65 { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02515.RNA-Seq.genomic.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 92f312f6-bc8f-4765-a6f1-9af13760a09c.rna_seq.genomic.gdc_realn.bam 13867954426 BAM genomic harmonized CPTAC3 62bd4207-e7b3-4c08-a26f-329727023f4e 89ab06f495312b2eec6d5023c7ab45ba { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor' } -C3L-02515.RNA-Seq.R1_L001.T C3L-02515 LUAD RNA-Seq tumor CPT0169040009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTACCTT-AAGACGTC_S3_L001_R1_001.fastq.gz 4328266410 FASTQ R1_L001 unaligned CPTAC3 d30961dd-d56d-4dfd-8876-010b32a92c9e 571035660fe76ffc4e3c44339b0a4f72 { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor' } -C3L-02515.RNA-Seq.R1_L002.A C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 190702_UNC32-K00270_0187_AH7FK2BBXY_AGTTCAGG-CCAACAGA_S6_L002_R1_001.fastq.gz 2719163841 FASTQ R1_L002 unaligned CPTAC3 329f99fe-02fb-4a00-9470-e6bc43234b59 c6dae51e1199e60266c77f3f91168d96 { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02515.RNA-Seq.R2_L001.T C3L-02515 LUAD RNA-Seq tumor CPT0169040009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTACCTT-AAGACGTC_S3_L001_R2_001.fastq.gz 5015581215 FASTQ R2_L001 unaligned CPTAC3 1621cf0d-6ab3-44bb-b617-4606fba642b0 5da36a1da09dabc6c0dbb1fe8af3972e { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor' } -C3L-02515.RNA-Seq.R2_L002.A C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 190702_UNC32-K00270_0187_AH7FK2BBXY_AGTTCAGG-CCAACAGA_S6_L002_R2_001.fastq.gz 3041179897 FASTQ R2_L002 unaligned CPTAC3 b1412293-32c8-4901-96f6-48d7cae2cc8e f4e0d88c507b24234cd8fedf2f5338ed { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02515.RNA-Seq.transcriptome.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 0421ec3d-04c3-41f1-b99c-4a72e201e97f.rna_seq.transcriptome.gdc_realn.bam 5444554741 BAM transcriptome harmonized CPTAC3 93c9b859-017f-4b6c-a2af-37fedd06ee38 9ea3b70716d4cf297ee0414465eafa37 { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02515.RNA-Seq.transcriptome.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 92f312f6-bc8f-4765-a6f1-9af13760a09c.rna_seq.transcriptome.gdc_realn.bam 8400340681 BAM transcriptome harmonized CPTAC3 8e5cc058-52e9-49d0-a606-80d7e98da94d 2e012c9ebad05eeb202988477b745b42 { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor' } +C3L-02515.RNA-Seq.chimeric.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 e7555126-fb0e-4c26-9c49-5b018d9408bc.rna_seq.chimeric.gdc_realn.bam 62273895 BAM chimeric harmonized CPTAC3 8d8710c0-4e44-43c9-8fce-bbcca3ecc597 038dc9207cfd427c729ffe16b44c14ca { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02515.RNA-Seq.chimeric.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 1ea3ad91-726e-425c-8d3d-19b15656c10a.rna_seq.chimeric.gdc_realn.bam 34873004 BAM chimeric harmonized CPTAC3 a0dfa370-73de-413e-a7f6-994e12cc9bb8 eab8f6b1e331de54293085ffbab017c3 { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor' } +C3L-02515.RNA-Seq.genomic.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 e7555126-fb0e-4c26-9c49-5b018d9408bc.rna_seq.genomic.gdc_realn.bam 6583297441 BAM genomic harmonized CPTAC3 374c2a69-ccc4-4325-91db-66a642ef1d15 a6b2c6a569cbc859a602418d58006ac4 { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02515.RNA-Seq.genomic.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 1ea3ad91-726e-425c-8d3d-19b15656c10a.rna_seq.genomic.gdc_realn.bam 13870033571 BAM genomic harmonized CPTAC3 e09911bf-8735-45b6-b708-f4fd2b483972 ca5b6108e283dbcedeff083bceb9e5ec { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor' } +C3L-02515.RNA-Seq.R1_L001.T C3L-02515 LUAD RNA-Seq tumor CPT0169040009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTACCTT-AAGACGTC_S3_L001_R1_001.fastq.gz 4328266410 FASTQ R1_L001 unaligned CPTAC3 d30961dd-d56d-4dfd-8876-010b32a92c9e 571035660fe76ffc4e3c44339b0a4f72 { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02515.RNA-Seq.R1_L002.A C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 190702_UNC32-K00270_0187_AH7FK2BBXY_AGTTCAGG-CCAACAGA_S6_L002_R1_001.fastq.gz 2719163841 FASTQ R1_L002 unaligned CPTAC3 329f99fe-02fb-4a00-9470-e6bc43234b59 c6dae51e1199e60266c77f3f91168d96 { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-02515.RNA-Seq.R2_L001.T C3L-02515 LUAD RNA-Seq tumor CPT0169040009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTACCTT-AAGACGTC_S3_L001_R2_001.fastq.gz 5015581215 FASTQ R2_L001 unaligned CPTAC3 1621cf0d-6ab3-44bb-b617-4606fba642b0 5da36a1da09dabc6c0dbb1fe8af3972e { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02515.RNA-Seq.R2_L002.A C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 190702_UNC32-K00270_0187_AH7FK2BBXY_AGTTCAGG-CCAACAGA_S6_L002_R2_001.fastq.gz 3041179897 FASTQ R2_L002 unaligned CPTAC3 b1412293-32c8-4901-96f6-48d7cae2cc8e f4e0d88c507b24234cd8fedf2f5338ed { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-02515.RNA-Seq.transcriptome.A.hg38 C3L-02515 LUAD RNA-Seq tissue_normal CPT0169050009 e7555126-fb0e-4c26-9c49-5b018d9408bc.rna_seq.transcriptome.gdc_realn.bam 6168076572 BAM transcriptome harmonized CPTAC3 f0efcb5c-7a50-4e03-854f-12040dfa188f 81070844f4a700db859085f5f5b48e69 { 'aliquot_tag': 'ALQ_ed77300e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02515.RNA-Seq.transcriptome.T.hg38 C3L-02515 LUAD RNA-Seq tumor CPT0169040009 1ea3ad91-726e-425c-8d3d-19b15656c10a.rna_seq.transcriptome.gdc_realn.bam 9352754076 BAM transcriptome harmonized CPTAC3 a645df83-e511-4883-a334-e21214d68a27 bcbc9b6ac1c655253069fbaf58cf0f46 { 'aliquot_tag': 'ALQ_d01719be', 'gdc_sample_type': 'Primary Tumor' } C3L-02515.WGS.N C3L-02515 LUAD WGS blood_normal CPT0167510002 CPT0167510002.WholeGenome.RP-1303.bam 63731998499 BAM aligned CPTAC3 3efbe2b0-c230-4ed3-b3eb-a4bafb200d92 bdbfddf83d8e0be33f4caeef7bfa9044 { 'aliquot_tag': 'ALQ_8fd7a5a8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02515.WGS.N.hg38 C3L-02515 LUAD WGS blood_normal CPT0167510002 59251b1e-8bc0-4f5d-a9f9-47bd64d6442d_wgs_gdc_realn.bam 92018912558 BAM harmonized CPTAC3 183894e5-ccfb-4f93-bbd3-aa80b13bf943 7e31c5f3142f347bbd72a26714de8ac6 { 'aliquot_tag': 'ALQ_8fd7a5a8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02515.WGS.T C3L-02515 LUAD WGS tumor CPT0169040006 CPT0169040006.WholeGenome.RP-1303.bam 68933764701 BAM aligned CPTAC3 8b33d5de-c8f8-4582-9f82-f95832085384 31811b333352a042b6052371a9bc73af { 'aliquot_tag': 'ALQ_40a8042f', 'gdc_sample_type': 'Primary Tumor' } @@ -10691,9 +11456,9 @@ C3L-02542.MethArray.Red.T C3L-02542 GBM Methylation Array tumor CPT0161730006 20 C3L-02542.miRNA-Seq.T C3L-02542 GBM miRNA-Seq tumor CPT0161730009 181119_UNC31-K00269_0165_AH27WCBBXY_CACTCA_S8_L001_R1_001.unaln.bam 146617757 BAM unaligned CPTAC3 82fba379-9c4e-4e45-84cb-a14159a04c7d 1773f32423d8ac051610cec868c57e05 { 'aliquot_tag': 'ALQ_4cddbb71', 'gdc_sample_type': 'Primary Tumor' } C3L-02542.miRNA-Seq.T.hg38 C3L-02542 GBM miRNA-Seq tumor CPT0161730009 9c2b85a6-9e7c-4a2a-93a7-7e2207c19003_mirnaseq_gdc_realn.bam 164518566 BAM harmonized CPTAC3 7da64cfa-f54f-4ab1-bf75-d4d376161038 d8f14a145ffc444c6178273aab45316d { 'aliquot_tag': 'ALQ_4cddbb71', 'gdc_sample_type': 'Primary Tumor' } C3L-02542.RNA-Seq.chimeric.T.hg38 C3L-02542 GBM RNA-Seq tumor CPT0161730009 0dbfa70d-2a0d-41c4-aca6-b8df6394bb9c.rna_seq.chimeric.gdc_realn.bam 33593623 BAM chimeric harmonized CPTAC3 2747e76b-112b-4f9d-b8cb-d32740a762a9 50c59173ad25e8a5849bbf075ba84471 { 'aliquot_tag': 'ALQ_4cddbb71', 'gdc_sample_type': 'Primary Tumor' } -C3L-02542.RNA-Seq.genomic.T.hg38 C3L-02542 GBM RNA-Seq tumor CPT0161730009 0dbfa70d-2a0d-41c4-aca6-b8df6394bb9c.rna_seq.genomic.gdc_realn.bam 8230141629 BAM genomic harmonized CPTAC3 00c1e0cf-cdc0-4662-b592-d68fb6dc9e2f e7b3f0fd57fb4c41e6b0a4c71b7a98bf { 'aliquot_tag': 'ALQ_4cddbb71', 'gdc_sample_type': 'Primary Tumor' } -C3L-02542.RNA-Seq.R1_L004.T C3L-02542 GBM RNA-Seq tumor CPT0161730009 180516_UNC31-K00269_0130_BHV22JBBXX_ACTTGA_S16_L004_R1_001.fastq.gz 3905074445 FASTQ R1_L004 unaligned CPTAC3 148dde8b-7f53-4016-9aef-da06c36753a1 cee2aa8153e6f000433593a0f9c2cbe2 { 'aliquot_tag': 'ALQ_4cddbb71', 'gdc_sample_type': 'Primary Tumor' } -C3L-02542.RNA-Seq.R2_L004.T C3L-02542 GBM RNA-Seq tumor CPT0161730009 180516_UNC31-K00269_0130_BHV22JBBXX_ACTTGA_S16_L004_R2_001.fastq.gz 4239373564 FASTQ R2_L004 unaligned CPTAC3 d6009fd4-a604-4924-a56b-4894e2db69d1 91080ccdbbbd5a81127f59bf5d62b43e { 'aliquot_tag': 'ALQ_4cddbb71', 'gdc_sample_type': 'Primary Tumor' } +C3L-02542.RNA-Seq.genomic.T.hg38 C3L-02542 GBM RNA-Seq tumor CPT0161730009 0dbfa70d-2a0d-41c4-aca6-b8df6394bb9c.rna_seq.genomic.gdc_realn.bam 8230141629 BAM genomic harmonized CPTAC3 89bebecd-419a-4271-ae41-54ef4fbe97a5 e7b3f0fd57fb4c41e6b0a4c71b7a98bf { 'aliquot_tag': 'ALQ_4cddbb71', 'gdc_sample_type': 'Primary Tumor' } +C3L-02542.RNA-Seq.R1_L004.T C3L-02542 GBM RNA-Seq tumor CPT0161730009 180516_UNC31-K00269_0130_BHV22JBBXX_ACTTGA_S16_L004_R1_001.fastq.gz 3905074445 FASTQ R1_L004 unaligned CPTAC3 148dde8b-7f53-4016-9aef-da06c36753a1 cee2aa8153e6f000433593a0f9c2cbe2 { 'aliquot_tag': 'ALQ_4cddbb71', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02542.RNA-Seq.R2_L004.T C3L-02542 GBM RNA-Seq tumor CPT0161730009 180516_UNC31-K00269_0130_BHV22JBBXX_ACTTGA_S16_L004_R2_001.fastq.gz 4239373564 FASTQ R2_L004 unaligned CPTAC3 d6009fd4-a604-4924-a56b-4894e2db69d1 91080ccdbbbd5a81127f59bf5d62b43e { 'aliquot_tag': 'ALQ_4cddbb71', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-02542.RNA-Seq.transcriptome.T.hg38 C3L-02542 GBM RNA-Seq tumor CPT0161730009 0dbfa70d-2a0d-41c4-aca6-b8df6394bb9c.rna_seq.transcriptome.gdc_realn.bam 9714230638 BAM transcriptome harmonized CPTAC3 1143e1d8-906a-4bdf-a2ca-16c1fd9dc43d b333832bb23aae8e0bb571f8d9c2820a { 'aliquot_tag': 'ALQ_4cddbb71', 'gdc_sample_type': 'Primary Tumor' } C3L-02542.WGS.N C3L-02542 GBM WGS blood_normal CPT0162540002 CPT0162540002.WholeGenome.RP-1303.bam 53592597788 BAM aligned CPTAC3 e24da890-be79-4367-acf3-4460e864ecfe 9ba2e21d21435d08d9a8fb31d6be97c2 { 'aliquot_tag': 'ALQ_150f057f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02542.WGS.N.hg38 C3L-02542 GBM WGS blood_normal CPT0162540002 daa74a11-fa31-4edd-9735-67188296ef8a_wgs_gdc_realn.bam 77449398479 BAM harmonized CPTAC3 b5daa535-65cf-4f16-9101-9694dbe04250 d3a3fec64e3eadbb69fac42d81fe890a { 'aliquot_tag': 'ALQ_150f057f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10711,16 +11476,16 @@ C3L-02544.miRNA-Seq.A C3L-02544 CCRCC miRNA-Seq tissue_normal CPT0113150009 1901 C3L-02544.miRNA-Seq.A.hg38 C3L-02544 CCRCC miRNA-Seq tissue_normal CPT0113150009 3c4d6334-524f-4863-881b-bbd42e5140d6_mirnaseq_gdc_realn.bam 174696658 BAM harmonized CPTAC3 1b8a9bb4-7979-4655-90e3-799bcf773d4b 051d288942a137cac0685ab7206b2171 { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02544.miRNA-Seq.T C3L-02544 CCRCC miRNA-Seq tumor CPT0113120006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAAAAG_S28_L003_R1_001.unaln.bam 154198619 BAM unaligned CPTAC3 821962f3-dd63-4d1d-bdb4-b8805201e92f 3efc8db7bfefd24e85ca6889bfd36aea { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor' } C3L-02544.miRNA-Seq.T.hg38 C3L-02544 CCRCC miRNA-Seq tumor CPT0113120006 f912281d-1692-4ae6-914a-c86e7332944f_mirnaseq_gdc_realn.bam 166170315 BAM harmonized CPTAC3 30567aee-2dae-4751-8db3-99324fac8bb9 2315cfbdd5210614afc2ba07fb3c40f9 { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02544.RNA-Seq.chimeric.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 169c4eeb-1627-4eed-a8fe-404dc188304a.rna_seq.chimeric.gdc_realn.bam 211428591 BAM chimeric harmonized CPTAC3 9aff88da-8f3f-46c8-a37a-51e4b1117cf9 66bb479b85fde71932a155545f021060 { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02544.RNA-Seq.chimeric.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 edc45466-ae17-4a20-8ed8-8516b3805202.rna_seq.chimeric.gdc_realn.bam 24333859 BAM chimeric harmonized CPTAC3 2a44d01d-4b67-4ceb-91f9-3a2197abc3f6 0d925ba0be40cb2437d77fe794e09e72 { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02544.RNA-Seq.genomic.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 169c4eeb-1627-4eed-a8fe-404dc188304a.rna_seq.genomic.gdc_realn.bam 9022392578 BAM genomic harmonized CPTAC3 5920e370-30a1-4e59-a6b4-b37167c6ed2f de51d7ae69f6ced7b526f7e856181a64 { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02544.RNA-Seq.genomic.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 edc45466-ae17-4a20-8ed8-8516b3805202.rna_seq.genomic.gdc_realn.bam 7695567147 BAM genomic harmonized CPTAC3 1fdec8e8-f544-4206-bdca-419d6119b1c8 159279b71abcbac40367ceebaffbde8e { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02544.RNA-Seq.R1_L003.A C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 190117_UNC31-K00269_0180_AH35VKBBXY_TGACCA_S12_L003_R1_001.fastq.gz 3997638933 FASTQ R1_L003 unaligned CPTAC3 1c7eb3e8-82ba-4343-a042-072fcc3794ff d48f2db97e8b9cfce9e2028bcccf1c1b { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02544.RNA-Seq.R1_L004.T C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 181207_UNC32-K00270_0137_BH2LYCBBXY_TGACCA_S16_L004_R1_001.fastq.gz 3471671038 FASTQ R1_L004 unaligned CPTAC3 d4cfc0a2-2492-41cb-9568-a4f46275642a a058f4a2852812631312e626a131ef62 { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02544.RNA-Seq.R2_L003.A C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 190117_UNC31-K00269_0180_AH35VKBBXY_TGACCA_S12_L003_R2_001.fastq.gz 4220000969 FASTQ R2_L003 unaligned CPTAC3 f526c9ce-0d0f-4a65-869d-2706062c141e d460432fcdc1c0e5f4bda865a4cf5a9a { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02544.RNA-Seq.R2_L004.T C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 181207_UNC32-K00270_0137_BH2LYCBBXY_TGACCA_S16_L004_R2_001.fastq.gz 3683894349 FASTQ R2_L004 unaligned CPTAC3 22f1da09-4dcf-4b82-aa88-5fc6b17d7fde 7a43c0de89eea5d618e9b92ab3f24a95 { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02544.RNA-Seq.transcriptome.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 169c4eeb-1627-4eed-a8fe-404dc188304a.rna_seq.transcriptome.gdc_realn.bam 8298080409 BAM transcriptome harmonized CPTAC3 efa9c846-1f94-46f6-88e4-6c264ea643de 289225e7a09d55930169524def1556ca { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02544.RNA-Seq.transcriptome.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 edc45466-ae17-4a20-8ed8-8516b3805202.rna_seq.transcriptome.gdc_realn.bam 9038527527 BAM transcriptome harmonized CPTAC3 a1ef4fc0-cc51-4658-a93e-2c7321bfc9f6 2c5bdf5f5e44fcc687872194fd8160b5 { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02544.RNA-Seq.chimeric.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 df0ae930-d49f-4269-b4cb-942b0544f2c4.rna_seq.chimeric.gdc_realn.bam 211404207 BAM chimeric harmonized CPTAC3 4576af93-6fae-4dac-939b-a94f75bef9fe 5338fa0517484bdba87743e32cd34fdc { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02544.RNA-Seq.chimeric.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 084c4ff3-b809-4f62-921c-708895cd0859.rna_seq.chimeric.gdc_realn.bam 24325628 BAM chimeric harmonized CPTAC3 ae14112c-d2b7-4c54-93a5-e4e8f4c22781 b135cd72189bdafae8e307f30f20b967 { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02544.RNA-Seq.genomic.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 df0ae930-d49f-4269-b4cb-942b0544f2c4.rna_seq.genomic.gdc_realn.bam 9023126561 BAM genomic harmonized CPTAC3 6df8f6df-a38c-4b05-990e-e479a733e375 f71c0e284a9794482ee35c94715e5900 { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02544.RNA-Seq.genomic.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 084c4ff3-b809-4f62-921c-708895cd0859.rna_seq.genomic.gdc_realn.bam 7696440234 BAM genomic harmonized CPTAC3 218fd745-9368-43fb-881e-51174a944644 ffa0b495046572bd3cf312045a7e3c4b { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02544.RNA-Seq.R1_L003.A C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 190117_UNC31-K00269_0180_AH35VKBBXY_TGACCA_S12_L003_R1_001.fastq.gz 3997638933 FASTQ R1_L003 unaligned CPTAC3 1c7eb3e8-82ba-4343-a042-072fcc3794ff d48f2db97e8b9cfce9e2028bcccf1c1b { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-02544.RNA-Seq.R1_L004.T C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 181207_UNC32-K00270_0137_BH2LYCBBXY_TGACCA_S16_L004_R1_001.fastq.gz 3471671038 FASTQ R1_L004 unaligned CPTAC3 d4cfc0a2-2492-41cb-9568-a4f46275642a a058f4a2852812631312e626a131ef62 { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02544.RNA-Seq.R2_L003.A C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 190117_UNC31-K00269_0180_AH35VKBBXY_TGACCA_S12_L003_R2_001.fastq.gz 4220000969 FASTQ R2_L003 unaligned CPTAC3 f526c9ce-0d0f-4a65-869d-2706062c141e d460432fcdc1c0e5f4bda865a4cf5a9a { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-02544.RNA-Seq.R2_L004.T C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 181207_UNC32-K00270_0137_BH2LYCBBXY_TGACCA_S16_L004_R2_001.fastq.gz 3683894349 FASTQ R2_L004 unaligned CPTAC3 22f1da09-4dcf-4b82-aa88-5fc6b17d7fde 7a43c0de89eea5d618e9b92ab3f24a95 { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02544.RNA-Seq.transcriptome.A.hg38 C3L-02544 CCRCC RNA-Seq tissue_normal CPT0113150009 df0ae930-d49f-4269-b4cb-942b0544f2c4.rna_seq.transcriptome.gdc_realn.bam 9464863980 BAM transcriptome harmonized CPTAC3 321c73ba-83aa-481a-adb1-5d7da5801c35 02095f73dec09a2bc20fe699dbcbb43a { 'aliquot_tag': 'ALQ_889eb5fc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02544.RNA-Seq.transcriptome.T.hg38 C3L-02544 CCRCC RNA-Seq tumor CPT0113120006 084c4ff3-b809-4f62-921c-708895cd0859.rna_seq.transcriptome.gdc_realn.bam 10240934861 BAM transcriptome harmonized CPTAC3 a6ddef06-eada-4b90-abc4-f734fd14a6ad 549e6678f427d18bdbc816909d0c8ae4 { 'aliquot_tag': 'ALQ_aa01747d', 'gdc_sample_type': 'Primary Tumor' } C3L-02544.WGS.A C3L-02544 CCRCC WGS tissue_normal CPT0113150006 CPT0113150006.WholeGenome.RP-1303.bam 55709517458 BAM aligned CPTAC3 cb8ceb2d-08cb-489d-823d-d0257a8f0e28 38799e675e55b1f590e198eba92501db { 'aliquot_tag': 'ALQ_1821a86d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02544.WGS.A.hg38 C3L-02544 CCRCC WGS tissue_normal CPT0113150006 835b94a2-fb69-44b9-b331-3485c383fd0d_wgs_gdc_realn.bam 82717616680 BAM harmonized CPTAC3 f6cace19-1b12-4003-8156-5ea5413327dd da8ba87ff0482bc956fcde48dad67826 { 'aliquot_tag': 'ALQ_1821a86d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02544.WGS.N C3L-02544 CCRCC WGS blood_normal CPT0115240002 CPT0115240002.WholeGenome.RP-1303.bam 57986596787 BAM aligned CPTAC3 378405fc-dd94-491d-a1a6-70a5299bc679 f3d19a78bf2259a4eeabbc58220dfff2 { 'aliquot_tag': 'ALQ_c7680250', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10737,13 +11502,16 @@ C3L-02545.MethArray.Green.T C3L-02545 UCEC Methylation Array tumor CPT0113060009 C3L-02545.MethArray.Red.T C3L-02545 UCEC Methylation Array tumor CPT0113060009 203271750010_R06C01_Red.idat 13676206 IDAT Red NA CPTAC3 5f62c8fd-c2b5-4878-b492-d09c2181a347 9e72f19b70bab172b4ffade2a0a87d78 { 'aliquot_tag': 'ALQ_4621c89', 'gdc_sample_type': 'Primary Tumor' } C3L-02545.miRNA-Seq.T C3L-02545 UCEC miRNA-Seq tumor CPT0113060006 190108_UNC31-K00269_0176_AHYGLVBBXX_ATTCCT_S27_L003_R1_001.unaln.bam 240038644 BAM unaligned CPTAC3 530131bc-d008-4cc6-b6bd-ec22db3eed54 865e07609d95ba1ca3405f1d51565be3 { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor' } C3L-02545.miRNA-Seq.T.hg38 C3L-02545 UCEC miRNA-Seq tumor CPT0113060006 fb628e9b-a0cd-4a65-8f0d-e41a04f84b9e_mirnaseq_gdc_realn.bam 265164087 BAM harmonized CPTAC3 3c2ae94e-4672-4321-b641-cc7a1930d0dd 475663eb832057bb21b641a117f851d8 { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor' } -C3L-02545.RNA-Seq.chimeric.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 dbd83089-1051-4b45-bf96-d3fcadde9c7d.rna_seq.chimeric.gdc_realn.bam 29976744 BAM chimeric harmonized CPTAC3 9e93b8b6-ac69-49df-bd8b-82951bc8c935 0549d2d2735d414343543040afba8f92 { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor' } -C3L-02545.RNA-Seq.genomic.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 dbd83089-1051-4b45-bf96-d3fcadde9c7d.rna_seq.genomic.gdc_realn.bam 8635207443 BAM genomic harmonized CPTAC3 b2e66a0e-2e41-4e92-869f-067cc212bece 5d794c4b4dd2ace6b05ec1101f4d5ac4 { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor' } -C3L-02545.RNA-Seq.R1_L004.T C3L-02545 UCEC RNA-Seq tumor CPT0113060006 181207_UNC32-K00270_0137_BH2LYCBBXY_TTAGGC_S13_L004_R1_001.fastq.gz 3948336685 FASTQ R1_L004 unaligned CPTAC3 bcef598c-348e-4e73-9f94-e9c932caf978 20a0a9e5e366dd9f4c04e75644f20d08 { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor' } -C3L-02545.RNA-Seq.R1_.T C3L-02545 UCEC RNA-Seq tumor CPT0350200001 20210723_P2_B1_WB7988-plate2_S13_R1_001.fastq.gz 6376594171 FASTQ R1_ unaligned CPTAC3 07341a0d-32ac-4857-8c04-810eddefc830 09acff0e5ee17f20d6b6c4685e928509 { 'aliquot_tag': 'ALQ_5365fcf1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02545.RNA-Seq.R2_L004.T C3L-02545 UCEC RNA-Seq tumor CPT0113060006 181207_UNC32-K00270_0137_BH2LYCBBXY_TTAGGC_S13_L004_R2_001.fastq.gz 4317022674 FASTQ R2_L004 unaligned CPTAC3 995d0b42-9e1a-403f-996d-6926d76a2ea0 eaf65a74a94b28a000c13977e99b68fe { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor' } -C3L-02545.RNA-Seq.R2_.T C3L-02545 UCEC RNA-Seq tumor CPT0350200001 20210723_P2_B1_WB7988-plate2_S13_R2_001.fastq.gz 6623475324 FASTQ R2_ unaligned CPTAC3 80a0e685-3dc0-431f-9949-325fbe5ee7b8 c854afa634a1f308da7dc993391310c0 { 'aliquot_tag': 'ALQ_5365fcf1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02545.RNA-Seq.transcriptome.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 dbd83089-1051-4b45-bf96-d3fcadde9c7d.rna_seq.transcriptome.gdc_realn.bam 9494049613 BAM transcriptome harmonized CPTAC3 17eff7b9-6dfe-4727-aac3-e602c93c061d b08d189153e541869ccee854139e143e { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor' } +C3L-02545.RNA-Seq.chimeric.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 9ef5885b-2c15-4db5-a05e-16ef754460c5.rna_seq.chimeric.gdc_realn.bam 29960610 BAM chimeric harmonized CPTAC3 9382181c-923e-4ee5-a79b-9b983d292326 38285b33357be15ac063fb11245a39ba { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor' } +C3L-02545.RNA-Seq.chimeric.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0350200001 5fc3f4ec-4e56-43bb-878b-cef48f787434.rna_seq.chimeric.gdc_realn.bam 212842259 BAM chimeric harmonized CPTAC3 918454e4-7af2-4796-9f23-c882685ffb8f 5579e33894783e1e93e985b6c6e6981c { 'aliquot_tag': 'ALQ_5365fcf1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02545.RNA-Seq.genomic.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 9ef5885b-2c15-4db5-a05e-16ef754460c5.rna_seq.genomic.gdc_realn.bam 8636012362 BAM genomic harmonized CPTAC3 7f20a0ec-73a2-4684-ae71-65f2cffef3d1 fe35b540ae502e9d53a6c1432301efd6 { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor' } +C3L-02545.RNA-Seq.genomic.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0350200001 5fc3f4ec-4e56-43bb-878b-cef48f787434.rna_seq.genomic.gdc_realn.bam 10813974328 BAM genomic harmonized CPTAC3 b8f161ad-a712-40b9-8081-70110d6c2bba 748bfc5333ff9e59e10188c8e4ac97b3 { 'aliquot_tag': 'ALQ_5365fcf1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02545.RNA-Seq.R1_L004.T C3L-02545 UCEC RNA-Seq tumor CPT0113060006 181207_UNC32-K00270_0137_BH2LYCBBXY_TTAGGC_S13_L004_R1_001.fastq.gz 3948336685 FASTQ R1_L004 unaligned CPTAC3 bcef598c-348e-4e73-9f94-e9c932caf978 20a0a9e5e366dd9f4c04e75644f20d08 { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02545.RNA-Seq.R2_L004.T C3L-02545 UCEC RNA-Seq tumor CPT0113060006 181207_UNC32-K00270_0137_BH2LYCBBXY_TTAGGC_S13_L004_R2_001.fastq.gz 4317022674 FASTQ R2_L004 unaligned CPTAC3 995d0b42-9e1a-403f-996d-6926d76a2ea0 eaf65a74a94b28a000c13977e99b68fe { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02545.RNA-Seq.T C3L-02545 UCEC RNA-Seq tumor CPT0350200001 20210723_P2_B1_WB7988-plate2_S13_R1_001.fastq.gz 6376594171 FASTQ unaligned CPTAC3 07341a0d-32ac-4857-8c04-810eddefc830 09acff0e5ee17f20d6b6c4685e928509 +C3L-02545.RNA-Seq.T C3L-02545 UCEC RNA-Seq tumor CPT0350200001 20210723_P2_B1_WB7988-plate2_S13_R2_001.fastq.gz 6623475324 FASTQ unaligned CPTAC3 80a0e685-3dc0-431f-9949-325fbe5ee7b8 c854afa634a1f308da7dc993391310c0 +C3L-02545.RNA-Seq.transcriptome.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0113060006 9ef5885b-2c15-4db5-a05e-16ef754460c5.rna_seq.transcriptome.gdc_realn.bam 10888004700 BAM transcriptome harmonized CPTAC3 a2ea2351-324a-4b1a-a9d5-fc4ddabdf612 d2451e839c28af6905d369cee2e1f164 { 'aliquot_tag': 'ALQ_94dd0118', 'gdc_sample_type': 'Primary Tumor' } +C3L-02545.RNA-Seq.transcriptome.T.hg38 C3L-02545 UCEC RNA-Seq tumor CPT0350200001 5fc3f4ec-4e56-43bb-878b-cef48f787434.rna_seq.transcriptome.gdc_realn.bam 6586865901 BAM transcriptome harmonized CPTAC3 a358d36b-eb94-4046-818f-7b2de91c1540 adc171437a5314cc8f2b0c3a316671cd { 'aliquot_tag': 'ALQ_5365fcf1', 'gdc_sample_type': 'Primary Tumor' } C3L-02545.WGS.N C3L-02545 UCEC WGS blood_normal CPT0115230002 CPT0115230002.WholeGenome.RP-1303.bam 60063306742 BAM aligned CPTAC3 36854f1c-ba3a-4d33-bd5e-fb6dd867c8d6 63da0d118f289e3c04dfbb6b17c5819b { 'aliquot_tag': 'ALQ_7548de40', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02545.WGS.N.hg38 C3L-02545 UCEC WGS blood_normal CPT0115230002 c318b321-0a84-424a-897e-68cbd9f5b838_wgs_gdc_realn.bam 87587039901 BAM harmonized CPTAC3 e655dbd5-c57d-42f2-9c25-24194b3f118a f516f7c3cd5422ac1483abffdeea6d33 { 'aliquot_tag': 'ALQ_7548de40', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02545.WGS.T C3L-02545 UCEC WGS tumor CPT0113060009 CPT0113060009.WholeGenome.RP-1303.bam 64030472861 BAM aligned CPTAC3 2185efb3-f734-451c-b7b8-b7e6cd825b52 a07c12b125f939bd3cf74a7ea10f2510 { 'aliquot_tag': 'ALQ_4621c89', 'gdc_sample_type': 'Primary Tumor' } @@ -10762,12 +11530,12 @@ C3L-02546.miRNA-Seq.T C3L-02546 LSCC miRNA-Seq tumor CPT0112650006 181219_UNC31- C3L-02546.miRNA-Seq.T.hg38 C3L-02546 LSCC miRNA-Seq tumor CPT0112650006 f7d7ac86-012e-4ebc-b1b8-699c65f50554_mirnaseq_gdc_realn.bam 278898204 BAM harmonized CPTAC3 9c53488d-5875-46b8-a50c-205db6a92d77 8a9db2318f0c5293e994d2213869a654 { 'aliquot_tag': 'ALQ_a3539361', 'gdc_sample_type': 'Primary Tumor' } C3L-02546.RNA-Seq.chimeric.A.hg38 C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 68bec534-52a4-4aa1-a3ba-feef1539a997.rna_seq.chimeric.gdc_realn.bam 28794113 BAM chimeric harmonized CPTAC3 7f597353-1b06-4b15-bb3d-19e24948d4a9 3c1acd4eaae7a12a70cb32a5bc46ad1d { 'aliquot_tag': 'ALQ_744cf420', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02546.RNA-Seq.chimeric.T.hg38 C3L-02546 LSCC RNA-Seq tumor CPT0112650006 71343550-30de-44c3-b221-bac9427cbd7f.rna_seq.chimeric.gdc_realn.bam 37788798 BAM chimeric harmonized CPTAC3 d2acd089-cbd6-4f07-9468-aa8e6aafc0c2 4ac7f81899cd4bfe61b364b6a8c18bd6 { 'aliquot_tag': 'ALQ_a3539361', 'gdc_sample_type': 'Primary Tumor' } -C3L-02546.RNA-Seq.genomic.A.hg38 C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 68bec534-52a4-4aa1-a3ba-feef1539a997.rna_seq.genomic.gdc_realn.bam 8582230701 BAM genomic harmonized CPTAC3 13600345-a737-4965-8acd-9ec11edb887c 6ffded1d6b6376e28b7c23a05ce01298 { 'aliquot_tag': 'ALQ_744cf420', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02546.RNA-Seq.genomic.T.hg38 C3L-02546 LSCC RNA-Seq tumor CPT0112650006 71343550-30de-44c3-b221-bac9427cbd7f.rna_seq.genomic.gdc_realn.bam 9267959037 BAM genomic harmonized CPTAC3 3501c529-0915-418e-aa12-84acf326ed9d f03d686e0c95e344a7c09f8ee7808123 { 'aliquot_tag': 'ALQ_a3539361', 'gdc_sample_type': 'Primary Tumor' } -C3L-02546.RNA-Seq.R1_L006.A C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3851688918 FASTQ R1_L006 unaligned CPTAC3 ea37fd16-da19-47cf-970e-010d21723214 25a3f974e773e8127846b0ac0b514392 { 'aliquot_tag': 'ALQ_744cf420', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02546.RNA-Seq.R1_L006.T C3L-02546 LSCC RNA-Seq tumor CPT0112650006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACAGTG_S23_L006_R1_001.fastq.gz 4327893784 FASTQ R1_L006 unaligned CPTAC3 afb20289-623e-41ba-8730-b3414c9e6f1f 81842ed59b1307992a4c6f9d49b9b3f6 { 'aliquot_tag': 'ALQ_a3539361', 'gdc_sample_type': 'Primary Tumor' } -C3L-02546.RNA-Seq.R2_L006.A C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTCAA_S23_L006_R2_001.fastq.gz 3995060515 FASTQ R2_L006 unaligned CPTAC3 d7c32ece-35aa-4c16-850a-5e00b660fb62 556fa600b8718552a8c45cc8438da364 { 'aliquot_tag': 'ALQ_744cf420', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02546.RNA-Seq.R2_L006.T C3L-02546 LSCC RNA-Seq tumor CPT0112650006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACAGTG_S23_L006_R2_001.fastq.gz 4723029633 FASTQ R2_L006 unaligned CPTAC3 9b8abc9d-9c19-4032-a25c-31b682b98864 3e9c2a1142bf236b0412e2b3617830a7 { 'aliquot_tag': 'ALQ_a3539361', 'gdc_sample_type': 'Primary Tumor' } +C3L-02546.RNA-Seq.genomic.A.hg38 C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 68bec534-52a4-4aa1-a3ba-feef1539a997.rna_seq.genomic.gdc_realn.bam 8582230701 BAM genomic harmonized CPTAC3 a32cc404-19d5-4bb4-bfa3-155c8fd9d5a6 6ffded1d6b6376e28b7c23a05ce01298 { 'aliquot_tag': 'ALQ_744cf420', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02546.RNA-Seq.genomic.T.hg38 C3L-02546 LSCC RNA-Seq tumor CPT0112650006 71343550-30de-44c3-b221-bac9427cbd7f.rna_seq.genomic.gdc_realn.bam 9267959037 BAM genomic harmonized CPTAC3 edb0fa2d-0171-4440-931c-ee6d449ac10e f03d686e0c95e344a7c09f8ee7808123 { 'aliquot_tag': 'ALQ_a3539361', 'gdc_sample_type': 'Primary Tumor' } +C3L-02546.RNA-Seq.R1_L006.A C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTCAA_S23_L006_R1_001.fastq.gz 3851688918 FASTQ R1_L006 unaligned CPTAC3 ea37fd16-da19-47cf-970e-010d21723214 25a3f974e773e8127846b0ac0b514392 { 'aliquot_tag': 'ALQ_744cf420', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-02546.RNA-Seq.R1_L006.T C3L-02546 LSCC RNA-Seq tumor CPT0112650006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACAGTG_S23_L006_R1_001.fastq.gz 4327893784 FASTQ R1_L006 unaligned CPTAC3 afb20289-623e-41ba-8730-b3414c9e6f1f 81842ed59b1307992a4c6f9d49b9b3f6 { 'aliquot_tag': 'ALQ_a3539361', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02546.RNA-Seq.R2_L006.A C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 180926_UNC31-K00269_0155_AHWN7WBBXX_AGTCAA_S23_L006_R2_001.fastq.gz 3995060515 FASTQ R2_L006 unaligned CPTAC3 d7c32ece-35aa-4c16-850a-5e00b660fb62 556fa600b8718552a8c45cc8438da364 { 'aliquot_tag': 'ALQ_744cf420', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-02546.RNA-Seq.R2_L006.T C3L-02546 LSCC RNA-Seq tumor CPT0112650006 180925_UNC32-K00270_0122_BHWNF7BBXX_ACAGTG_S23_L006_R2_001.fastq.gz 4723029633 FASTQ R2_L006 unaligned CPTAC3 9b8abc9d-9c19-4032-a25c-31b682b98864 3e9c2a1142bf236b0412e2b3617830a7 { 'aliquot_tag': 'ALQ_a3539361', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02546.RNA-Seq.transcriptome.A.hg38 C3L-02546 LSCC RNA-Seq tissue_normal CPT0112660009 68bec534-52a4-4aa1-a3ba-feef1539a997.rna_seq.transcriptome.gdc_realn.bam 9909257362 BAM transcriptome harmonized CPTAC3 3c5b3f0a-4dd4-4afe-b9e5-12d15a135bef 346be7831fc2f276b57a621a1dfd9ee6 { 'aliquot_tag': 'ALQ_744cf420', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02546.RNA-Seq.transcriptome.T.hg38 C3L-02546 LSCC RNA-Seq tumor CPT0112650006 71343550-30de-44c3-b221-bac9427cbd7f.rna_seq.transcriptome.gdc_realn.bam 12675581366 BAM transcriptome harmonized CPTAC3 5e5702d4-8393-45a3-83e2-d3c368b3a136 2c661eebaa2396076a3fe3b134067b0c { 'aliquot_tag': 'ALQ_a3539361', 'gdc_sample_type': 'Primary Tumor' } C3L-02546.WGS.A C3L-02546 LSCC WGS tissue_normal CPT0112660006 CPT0112660006.WholeGenome.RP-1303.bam 53230923345 BAM aligned CPTAC3 e557d1e2-61e7-4b81-a0ec-7434ace84453 28596e9a582aef122f4d43e2b5ea69f1 { 'aliquot_tag': 'ALQ_e4f3e9b1', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -10792,12 +11560,12 @@ C3L-02549.miRNA-Seq.T C3L-02549 LUAD miRNA-Seq tumor CPT0113210006 181113_UNC31- C3L-02549.miRNA-Seq.T.hg38 C3L-02549 LUAD miRNA-Seq tumor CPT0113210006 be849fd7-d6e1-4b3d-9705-8d31cde89006_mirnaseq_gdc_realn.bam 213985898 BAM harmonized CPTAC3 a1319221-6c6c-4469-a95a-194ad134e4e8 d2bd05e39e307cd968649018835cb429 { 'aliquot_tag': 'ALQ_6b357c03', 'gdc_sample_type': 'Primary Tumor' } C3L-02549.RNA-Seq.chimeric.A.hg38 C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 9a65ea9e-7ee3-4730-9237-767575638c73.rna_seq.chimeric.gdc_realn.bam 64061927 BAM chimeric harmonized CPTAC3 c379f5d2-ddfd-4b64-93d5-aac7f297aace f78a03420b792c3ef549f17b711e614b { 'aliquot_tag': 'ALQ_2c9506d3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02549.RNA-Seq.chimeric.T.hg38 C3L-02549 LUAD RNA-Seq tumor CPT0113210006 d465a431-0324-4f04-af3a-44b46428eb25.rna_seq.chimeric.gdc_realn.bam 61938579 BAM chimeric harmonized CPTAC3 76d99934-b3c2-4d88-96a7-268b0224a617 9c2bf274b29e975f9fa6efbac2db1e6f { 'aliquot_tag': 'ALQ_6b357c03', 'gdc_sample_type': 'Primary Tumor' } -C3L-02549.RNA-Seq.genomic.A.hg38 C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 9a65ea9e-7ee3-4730-9237-767575638c73.rna_seq.genomic.gdc_realn.bam 8325086097 BAM genomic harmonized CPTAC3 c1df3422-229b-4c38-a179-138d820cf884 96ac394d40f38adac48f7ca63dfaaa7a { 'aliquot_tag': 'ALQ_2c9506d3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02549.RNA-Seq.genomic.T.hg38 C3L-02549 LUAD RNA-Seq tumor CPT0113210006 d465a431-0324-4f04-af3a-44b46428eb25.rna_seq.genomic.gdc_realn.bam 8302019673 BAM genomic harmonized CPTAC3 3e23ac21-c617-4b92-953f-f02ffa25e859 78f45e7a9c816188e38cd5221de01460 { 'aliquot_tag': 'ALQ_6b357c03', 'gdc_sample_type': 'Primary Tumor' } -C3L-02549.RNA-Seq.R1_L002.A C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L002_R1_001.fastq.gz 4048299200 FASTQ R1_L002 unaligned CPTAC3 82bbca47-74e7-4528-8592-a59273cbc3bc 25334d863410b560f2bd5b72bbad009e { 'aliquot_tag': 'ALQ_2c9506d3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02549.RNA-Seq.R1_L004.T C3L-02549 LUAD RNA-Seq tumor CPT0113210006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATTCCT_S15_L004_R1_001.fastq.gz 3712777353 FASTQ R1_L004 unaligned CPTAC3 ad1ac161-791e-426b-abcb-d564884c0d86 dca819c9f568e5371c35a7d4689683be { 'aliquot_tag': 'ALQ_6b357c03', 'gdc_sample_type': 'Primary Tumor' } -C3L-02549.RNA-Seq.R2_L002.A C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L002_R2_001.fastq.gz 4378753388 FASTQ R2_L002 unaligned CPTAC3 a7de7866-6449-46b9-8591-faa0c00950cd cbc42bb8cdb306196157a940f44a9a7f { 'aliquot_tag': 'ALQ_2c9506d3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02549.RNA-Seq.R2_L004.T C3L-02549 LUAD RNA-Seq tumor CPT0113210006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATTCCT_S15_L004_R2_001.fastq.gz 4231846917 FASTQ R2_L004 unaligned CPTAC3 0267044c-e819-411f-8ff3-698a68b20d3a 0d8aa07a64fe0213b37abba8f861a7c2 { 'aliquot_tag': 'ALQ_6b357c03', 'gdc_sample_type': 'Primary Tumor' } +C3L-02549.RNA-Seq.genomic.A.hg38 C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 9a65ea9e-7ee3-4730-9237-767575638c73.rna_seq.genomic.gdc_realn.bam 8325086097 BAM genomic harmonized CPTAC3 647d94d2-adc9-4d85-a60d-75c4c71006cd 96ac394d40f38adac48f7ca63dfaaa7a { 'aliquot_tag': 'ALQ_2c9506d3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02549.RNA-Seq.genomic.T.hg38 C3L-02549 LUAD RNA-Seq tumor CPT0113210006 d465a431-0324-4f04-af3a-44b46428eb25.rna_seq.genomic.gdc_realn.bam 8302019673 BAM genomic harmonized CPTAC3 3e5dee2e-ec64-4db7-b892-5d6413f9b13b 78f45e7a9c816188e38cd5221de01460 { 'aliquot_tag': 'ALQ_6b357c03', 'gdc_sample_type': 'Primary Tumor' } +C3L-02549.RNA-Seq.R1_L002.A C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L002_R1_001.fastq.gz 4048299200 FASTQ R1_L002 unaligned CPTAC3 82bbca47-74e7-4528-8592-a59273cbc3bc 25334d863410b560f2bd5b72bbad009e { 'aliquot_tag': 'ALQ_2c9506d3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-02549.RNA-Seq.R1_L004.T C3L-02549 LUAD RNA-Seq tumor CPT0113210006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATTCCT_S15_L004_R1_001.fastq.gz 3712777353 FASTQ R1_L004 unaligned CPTAC3 ad1ac161-791e-426b-abcb-d564884c0d86 dca819c9f568e5371c35a7d4689683be { 'aliquot_tag': 'ALQ_6b357c03', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02549.RNA-Seq.R2_L002.A C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L002_R2_001.fastq.gz 4378753388 FASTQ R2_L002 unaligned CPTAC3 a7de7866-6449-46b9-8591-faa0c00950cd cbc42bb8cdb306196157a940f44a9a7f { 'aliquot_tag': 'ALQ_2c9506d3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-02549.RNA-Seq.R2_L004.T C3L-02549 LUAD RNA-Seq tumor CPT0113210006 171109_UNC31-K00269_0091_BHMFGTBBXX_ATTCCT_S15_L004_R2_001.fastq.gz 4231846917 FASTQ R2_L004 unaligned CPTAC3 0267044c-e819-411f-8ff3-698a68b20d3a 0d8aa07a64fe0213b37abba8f861a7c2 { 'aliquot_tag': 'ALQ_6b357c03', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-02549.RNA-Seq.transcriptome.A.hg38 C3L-02549 LUAD RNA-Seq tissue_normal CPT0113220006 9a65ea9e-7ee3-4730-9237-767575638c73.rna_seq.transcriptome.gdc_realn.bam 10385876066 BAM transcriptome harmonized CPTAC3 2a5207fa-9a45-4a59-9a41-59e525717a1c 8beec219e4a6528f0d0d34e8ee0f9fa2 { 'aliquot_tag': 'ALQ_2c9506d3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02549.RNA-Seq.transcriptome.T.hg38 C3L-02549 LUAD RNA-Seq tumor CPT0113210006 d465a431-0324-4f04-af3a-44b46428eb25.rna_seq.transcriptome.gdc_realn.bam 11275396717 BAM transcriptome harmonized CPTAC3 e5949f5b-a85b-4684-b20b-56bfe0502736 dc81cae6801ecdb30e0c5595dad2d296 { 'aliquot_tag': 'ALQ_6b357c03', 'gdc_sample_type': 'Primary Tumor' } C3L-02549.WGS.A C3L-02549 LUAD WGS tissue_normal CPT0113220009 CPT0113220009.WholeGenome.RP-1303.bam 56469375027 BAM aligned CPTAC3 51a51128-7806-47c9-a968-3d8599ccf050 182789f8ff8dad136baf5596f317e1b2 { 'aliquot_tag': 'ALQ_bc2a1b42', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -10820,16 +11588,16 @@ C3L-02551.miRNA-Seq.A C3L-02551 CCRCC miRNA-Seq tissue_normal CPT0161540009 1901 C3L-02551.miRNA-Seq.A.hg38 C3L-02551 CCRCC miRNA-Seq tissue_normal CPT0161540009 2c6a6d75-da08-48d1-8da8-4e63edb8b0c7_mirnaseq_gdc_realn.bam 289511418 BAM harmonized CPTAC3 22a1c70b-22e7-4b9c-8f50-d9fb1d351dc1 d2376668d13b3b6a7bced07b41ce5baa { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02551.miRNA-Seq.T C3L-02551 CCRCC miRNA-Seq tumor CPT0161510009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAACTA_S31_L003_R1_001.unaln.bam 149020117 BAM unaligned CPTAC3 0ad0b01b-b2d9-4702-9214-fc8e457644ae 89864c60c9e0ab7e03937383557fae5f { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor' } C3L-02551.miRNA-Seq.T.hg38 C3L-02551 CCRCC miRNA-Seq tumor CPT0161510009 7c0e1ae8-fad8-469b-90e4-550416ffc3be_mirnaseq_gdc_realn.bam 163223991 BAM harmonized CPTAC3 72c8339d-7572-4a12-9527-215a29f56271 7d75d22b55436dac83a39a8cf05bd59a { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02551.RNA-Seq.chimeric.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 b5cbabf2-c127-4d17-a2c4-df42dbe85c8b.rna_seq.chimeric.gdc_realn.bam 71842994 BAM chimeric harmonized CPTAC3 d1b72bc4-67f5-4afc-a55c-18533cb75bf8 cd18c3af20ebd7002a3340ab9b0a7e12 { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02551.RNA-Seq.chimeric.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 50fe0834-a8f9-4d4c-82aa-6127c0819806.rna_seq.chimeric.gdc_realn.bam 121768282 BAM chimeric harmonized CPTAC3 ebc0a5fc-ac47-4612-9ae5-f191e790025d b5ade997a2188dccd4afb00d67754e93 { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02551.RNA-Seq.genomic.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 b5cbabf2-c127-4d17-a2c4-df42dbe85c8b.rna_seq.genomic.gdc_realn.bam 10672780207 BAM genomic harmonized CPTAC3 cd5b0a63-d3f2-4c41-a14c-eb47e7ad59a1 ce932954531bcea264ef897588f25928 { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02551.RNA-Seq.genomic.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 50fe0834-a8f9-4d4c-82aa-6127c0819806.rna_seq.genomic.gdc_realn.bam 8663561560 BAM genomic harmonized CPTAC3 98638905-7fc4-40f0-b711-c6903f19f06f 5a17faffeadcc809778f18738698b0ea { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02551.RNA-Seq.R1_L006.T C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 190125_UNC31-K00269_0184_AH3M32BBXY_ACAGTG_S16_L006_R1_001.fastq.gz 3677153793 FASTQ R1_L006 unaligned CPTAC3 fb3087ed-d401-4e42-b2a1-1cbe372e5e5a 1ab23bcf92e065f135e72d57a92b29c8 { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02551.RNA-Seq.R1_L008.A C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 190117_UNC31-K00269_0180_AH35VKBBXY_ATTCCT_S24_L008_R1_001.fastq.gz 4428833267 FASTQ R1_L008 unaligned CPTAC3 910966f5-e33e-4593-9c02-8e8c24b9278d 53180508e96e0e9c00dbf0447628b033 { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02551.RNA-Seq.R2_L006.T C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 190125_UNC31-K00269_0184_AH3M32BBXY_ACAGTG_S16_L006_R2_001.fastq.gz 3897429232 FASTQ R2_L006 unaligned CPTAC3 29354421-b9e4-4e98-bdec-82288547acd9 1ea0f3e50cbae7fb0816fff80ea64a3b { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02551.RNA-Seq.R2_L008.A C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 190117_UNC31-K00269_0180_AH35VKBBXY_ATTCCT_S24_L008_R2_001.fastq.gz 4934089489 FASTQ R2_L008 unaligned CPTAC3 d4324acb-ef41-4cc6-a5b5-c5512b8dee91 52f22706ca928b9e23ec34764d311dd3 { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02551.RNA-Seq.transcriptome.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 b5cbabf2-c127-4d17-a2c4-df42dbe85c8b.rna_seq.transcriptome.gdc_realn.bam 10272350501 BAM transcriptome harmonized CPTAC3 6be76678-4b35-460b-8b4b-2bd7c1811367 04db4dcd5eb5f92543be7605fa2cd633 { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02551.RNA-Seq.transcriptome.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 50fe0834-a8f9-4d4c-82aa-6127c0819806.rna_seq.transcriptome.gdc_realn.bam 8796417206 BAM transcriptome harmonized CPTAC3 5f791afe-2bae-4ff8-b4ed-d6280ff50812 a9922f237bb4b88c226a5bd2d3de1268 { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02551.RNA-Seq.chimeric.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 87185ec9-7aa8-48a5-9dc8-2420a879c178.rna_seq.chimeric.gdc_realn.bam 71811535 BAM chimeric harmonized CPTAC3 8dd12b1b-997c-40e5-9cd2-539ea9018b07 2c8de3a0c472920790df874b649881c9 { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02551.RNA-Seq.chimeric.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 fddf7311-f39a-4be5-a2d7-ec67489594f3.rna_seq.chimeric.gdc_realn.bam 121740040 BAM chimeric harmonized CPTAC3 07c8f8b5-8c06-4afd-8c8f-a1861c2c0166 104e8285eb77bddf36d7236f39a689ba { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02551.RNA-Seq.genomic.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 87185ec9-7aa8-48a5-9dc8-2420a879c178.rna_seq.genomic.gdc_realn.bam 10673736308 BAM genomic harmonized CPTAC3 f170f591-0d2e-46b9-b8cc-22bd53a7d32c 6fcc00a3eb76ff6e8b3b93d9c0954e1f { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02551.RNA-Seq.genomic.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 fddf7311-f39a-4be5-a2d7-ec67489594f3.rna_seq.genomic.gdc_realn.bam 8665124855 BAM genomic harmonized CPTAC3 7c7e310d-1059-4248-a0b3-2762fc88e5b0 17e68df521614f5b21de80921e63c1fe { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02551.RNA-Seq.R1_L006.T C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 190125_UNC31-K00269_0184_AH3M32BBXY_ACAGTG_S16_L006_R1_001.fastq.gz 3677153793 FASTQ R1_L006 unaligned CPTAC3 fb3087ed-d401-4e42-b2a1-1cbe372e5e5a 1ab23bcf92e065f135e72d57a92b29c8 { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02551.RNA-Seq.R1_L008.A C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 190117_UNC31-K00269_0180_AH35VKBBXY_ATTCCT_S24_L008_R1_001.fastq.gz 4428833267 FASTQ R1_L008 unaligned CPTAC3 910966f5-e33e-4593-9c02-8e8c24b9278d 53180508e96e0e9c00dbf0447628b033 { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02551.RNA-Seq.R2_L006.T C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 190125_UNC31-K00269_0184_AH3M32BBXY_ACAGTG_S16_L006_R2_001.fastq.gz 3897429232 FASTQ R2_L006 unaligned CPTAC3 29354421-b9e4-4e98-bdec-82288547acd9 1ea0f3e50cbae7fb0816fff80ea64a3b { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-02551.RNA-Seq.R2_L008.A C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 190117_UNC31-K00269_0180_AH35VKBBXY_ATTCCT_S24_L008_R2_001.fastq.gz 4934089489 FASTQ R2_L008 unaligned CPTAC3 d4324acb-ef41-4cc6-a5b5-c5512b8dee91 52f22706ca928b9e23ec34764d311dd3 { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02551.RNA-Seq.transcriptome.A.hg38 C3L-02551 CCRCC RNA-Seq tissue_normal CPT0161540009 87185ec9-7aa8-48a5-9dc8-2420a879c178.rna_seq.transcriptome.gdc_realn.bam 11733222965 BAM transcriptome harmonized CPTAC3 3541513b-ee89-4b5e-9501-5968bca78a49 dd04a738ce0eb298a6f533f7ccde3885 { 'aliquot_tag': 'ALQ_b335c66a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02551.RNA-Seq.transcriptome.T.hg38 C3L-02551 CCRCC RNA-Seq tumor CPT0161510009 fddf7311-f39a-4be5-a2d7-ec67489594f3.rna_seq.transcriptome.gdc_realn.bam 9881212406 BAM transcriptome harmonized CPTAC3 3dc12408-1c1e-4c81-af19-c29f290cb388 3eff552ac3fe9362513ef9b5f1825815 { 'aliquot_tag': 'ALQ_7bd5491a', 'gdc_sample_type': 'Primary Tumor' } C3L-02551.WGS.A C3L-02551 CCRCC WGS tissue_normal CPT0161540006 CPT0161540006.WholeGenome.RP-1303.bam 77375941138 BAM aligned CPTAC3 0c0bacce-441c-4cfc-9b4e-f1217cf96425 c3925804412d0d30eceaf0096522ee69 { 'aliquot_tag': 'ALQ_238adbfb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02551.WGS.A.hg38 C3L-02551 CCRCC WGS tissue_normal CPT0161540006 3e963853-6bb2-4a64-b030-c8072ed444c0_wgs_gdc_realn.bam 113037172321 BAM harmonized CPTAC3 3bfcb0ad-55a4-4b46-bc88-4970e01c162a 4471251e15b1cefe8ea705d7c4b1bc28 { 'aliquot_tag': 'ALQ_238adbfb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02551.WGS.N C3L-02551 CCRCC WGS blood_normal CPT0162510002 CPT0162510002.WholeGenome.RP-1303.bam 56656702955 BAM aligned CPTAC3 fc2146b7-d99f-421f-a8f6-5201856a120e 14d82a2e14627cfb87bfb1ab1a255f4b { 'aliquot_tag': 'ALQ_ddef8a0f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10852,12 +11620,12 @@ C3L-02552.miRNA-Seq.T C3L-02552 LSCC miRNA-Seq tumor CPT0112580009 181219_UNC31- C3L-02552.miRNA-Seq.T.hg38 C3L-02552 LSCC miRNA-Seq tumor CPT0112580009 1190a3c0-5849-43cc-bc20-25f5d7e55c9d_mirnaseq_gdc_realn.bam 273157407 BAM harmonized CPTAC3 2f24531e-76d0-43a9-ba77-92e27e45799c f72a9b3057c68da2a146dd5c423f2094 { 'aliquot_tag': 'ALQ_4de838ef', 'gdc_sample_type': 'Primary Tumor' } C3L-02552.RNA-Seq.chimeric.A.hg38 C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 fccc33ab-9340-44e0-afd1-cb372e203d1d.rna_seq.chimeric.gdc_realn.bam 25529752 BAM chimeric harmonized CPTAC3 ba788fdf-f2ff-4559-bb80-9da288c243f9 6d5dd16982b88121955830b96bf25893 { 'aliquot_tag': 'ALQ_fb0c0180', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02552.RNA-Seq.chimeric.T.hg38 C3L-02552 LSCC RNA-Seq tumor CPT0112580009 76a2adfd-af28-4324-b8c9-ce0621fe1165.rna_seq.chimeric.gdc_realn.bam 32668887 BAM chimeric harmonized CPTAC3 cb9ca05f-8ee1-4a59-8de8-1b97e28a1b09 06ea03ce3dc0b67f507220f17f6257f2 { 'aliquot_tag': 'ALQ_4de838ef', 'gdc_sample_type': 'Primary Tumor' } -C3L-02552.RNA-Seq.genomic.A.hg38 C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 fccc33ab-9340-44e0-afd1-cb372e203d1d.rna_seq.genomic.gdc_realn.bam 8675454058 BAM genomic harmonized CPTAC3 85d1e816-2ebf-40ec-bb76-bc4ccd338750 3b7f18acf29d297adea50338394bde5f { 'aliquot_tag': 'ALQ_fb0c0180', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02552.RNA-Seq.genomic.T.hg38 C3L-02552 LSCC RNA-Seq tumor CPT0112580009 76a2adfd-af28-4324-b8c9-ce0621fe1165.rna_seq.genomic.gdc_realn.bam 10624871745 BAM genomic harmonized CPTAC3 cb0ab62b-7bb1-47bb-81bc-081233e0d756 aadfea54067c795eaed988956f808cd5 { 'aliquot_tag': 'ALQ_4de838ef', 'gdc_sample_type': 'Primary Tumor' } -C3L-02552.RNA-Seq.R1_L005.A C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 180926_UNC31-K00269_0155_AHWN7WBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 3813348378 FASTQ R1_L005 unaligned CPTAC3 c35cc88e-f3b6-408e-9e9c-f00aa6607b53 26c2a076d0866776e4ff2661d890a50a { 'aliquot_tag': 'ALQ_fb0c0180', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02552.RNA-Seq.R1_L007.T C3L-02552 LSCC RNA-Seq tumor CPT0112580009 180925_UNC32-K00270_0122_BHWNF7BBXX_GGCTAC_S27_L007_R1_001.fastq.gz 4477909839 FASTQ R1_L007 unaligned CPTAC3 854f3883-871e-4852-83ec-c2b27d8f37da 2cb8d838f42e25ed009b33fe3f8f0dda { 'aliquot_tag': 'ALQ_4de838ef', 'gdc_sample_type': 'Primary Tumor' } -C3L-02552.RNA-Seq.R2_L005.A C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 180926_UNC31-K00269_0155_AHWN7WBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 3985197098 FASTQ R2_L005 unaligned CPTAC3 1564591b-36f6-4214-8c07-af3fd3eb641a 1aa9378bb8fb1d57861fe893cdb12057 { 'aliquot_tag': 'ALQ_fb0c0180', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02552.RNA-Seq.R2_L007.T C3L-02552 LSCC RNA-Seq tumor CPT0112580009 180925_UNC32-K00270_0122_BHWNF7BBXX_GGCTAC_S27_L007_R2_001.fastq.gz 4955109631 FASTQ R2_L007 unaligned CPTAC3 85099c50-e631-4f61-8413-f75281338558 812f2faa0668f5b9ba83cdee32e63bab { 'aliquot_tag': 'ALQ_4de838ef', 'gdc_sample_type': 'Primary Tumor' } +C3L-02552.RNA-Seq.genomic.A.hg38 C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 fccc33ab-9340-44e0-afd1-cb372e203d1d.rna_seq.genomic.gdc_realn.bam 8675454058 BAM genomic harmonized CPTAC3 f0ced0d0-7b25-40f9-bade-98f9c67b985f 3b7f18acf29d297adea50338394bde5f { 'aliquot_tag': 'ALQ_fb0c0180', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02552.RNA-Seq.genomic.T.hg38 C3L-02552 LSCC RNA-Seq tumor CPT0112580009 76a2adfd-af28-4324-b8c9-ce0621fe1165.rna_seq.genomic.gdc_realn.bam 10624871745 BAM genomic harmonized CPTAC3 43fd41f1-2312-46d3-bb0b-04af4eb130bb aadfea54067c795eaed988956f808cd5 { 'aliquot_tag': 'ALQ_4de838ef', 'gdc_sample_type': 'Primary Tumor' } +C3L-02552.RNA-Seq.R1_L005.A C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 180926_UNC31-K00269_0155_AHWN7WBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 3813348378 FASTQ R1_L005 unaligned CPTAC3 c35cc88e-f3b6-408e-9e9c-f00aa6607b53 26c2a076d0866776e4ff2661d890a50a { 'aliquot_tag': 'ALQ_fb0c0180', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02552.RNA-Seq.R1_L007.T C3L-02552 LSCC RNA-Seq tumor CPT0112580009 180925_UNC32-K00270_0122_BHWNF7BBXX_GGCTAC_S27_L007_R1_001.fastq.gz 4477909839 FASTQ R1_L007 unaligned CPTAC3 854f3883-871e-4852-83ec-c2b27d8f37da 2cb8d838f42e25ed009b33fe3f8f0dda { 'aliquot_tag': 'ALQ_4de838ef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02552.RNA-Seq.R2_L005.A C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 180926_UNC31-K00269_0155_AHWN7WBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 3985197098 FASTQ R2_L005 unaligned CPTAC3 1564591b-36f6-4214-8c07-af3fd3eb641a 1aa9378bb8fb1d57861fe893cdb12057 { 'aliquot_tag': 'ALQ_fb0c0180', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02552.RNA-Seq.R2_L007.T C3L-02552 LSCC RNA-Seq tumor CPT0112580009 180925_UNC32-K00270_0122_BHWNF7BBXX_GGCTAC_S27_L007_R2_001.fastq.gz 4955109631 FASTQ R2_L007 unaligned CPTAC3 85099c50-e631-4f61-8413-f75281338558 812f2faa0668f5b9ba83cdee32e63bab { 'aliquot_tag': 'ALQ_4de838ef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-02552.RNA-Seq.transcriptome.A.hg38 C3L-02552 LSCC RNA-Seq tissue_normal CPT0112600009 fccc33ab-9340-44e0-afd1-cb372e203d1d.rna_seq.transcriptome.gdc_realn.bam 10593616436 BAM transcriptome harmonized CPTAC3 0c7cb40d-3985-40c4-89e3-4aa9ec0d45c3 819202ccd73adec06179469c1c3fd618 { 'aliquot_tag': 'ALQ_fb0c0180', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02552.RNA-Seq.transcriptome.T.hg38 C3L-02552 LSCC RNA-Seq tumor CPT0112580009 76a2adfd-af28-4324-b8c9-ce0621fe1165.rna_seq.transcriptome.gdc_realn.bam 13780411340 BAM transcriptome harmonized CPTAC3 b2ad3a40-28cf-4c80-ab47-4abc7e9b25c1 a13680da271e388b0d458966599a44a1 { 'aliquot_tag': 'ALQ_4de838ef', 'gdc_sample_type': 'Primary Tumor' } C3L-02552.WGS.A C3L-02552 LSCC WGS tissue_normal CPT0112600006 CPT0112600006.WholeGenome.RP-1303.bam 54053928438 BAM aligned CPTAC3 87eac3b2-f9d0-466d-afca-89966e08df14 ac9091d1273eea0548a537c9684435ba { 'aliquot_tag': 'ALQ_6bb31c11', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -10876,11 +11644,11 @@ C3L-02553.MethArray.Green.T C3L-02553 CCRCC Methylation Array tumor CPT016179000 C3L-02553.MethArray.Red.T C3L-02553 CCRCC Methylation Array tumor CPT0161790006 203219640068_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 0bcbcf3a-fd38-457a-826d-4fe492fdc4c2 7fb8573f51acec71d8ceee353d089ba2 { 'aliquot_tag': 'ALQ_96d2be41', 'gdc_sample_type': 'Primary Tumor' } C3L-02553.miRNA-Seq.T C3L-02553 CCRCC miRNA-Seq tumor CPT0161790009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACCGG_S32_L003_R1_001.unaln.bam 193130654 BAM unaligned CPTAC3 cb488837-bef1-49e5-b542-05abe19fa38c 3b8bc29fe8f04c492f42c2f38e3bd5f2 { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor' } C3L-02553.miRNA-Seq.T.hg38 C3L-02553 CCRCC miRNA-Seq tumor CPT0161790009 481880fe-a0ba-4ea1-9dd8-d701a1dbc771_mirnaseq_gdc_realn.bam 214059322 BAM harmonized CPTAC3 9b5fa094-85c4-4e00-8b43-294fb14e3eb5 a272e94c40fa2cc64ce76c739c569232 { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02553.RNA-Seq.chimeric.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 01c64ddb-dfc6-4994-9081-aeaa700acf95.rna_seq.chimeric.gdc_realn.bam 120215434 BAM chimeric harmonized CPTAC3 e26e88cb-1309-4351-85b5-4874f5593409 d9c4d5b4a6204df3b12b4c856ef015b4 { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02553.RNA-Seq.genomic.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 01c64ddb-dfc6-4994-9081-aeaa700acf95.rna_seq.genomic.gdc_realn.bam 8173417526 BAM genomic harmonized CPTAC3 f7cef405-1618-4f02-ad30-f1504f29f50c a3a88ba0ee826a3eda1d76f30f3b0f8f { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02553.RNA-Seq.R1_L006.T C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 190125_UNC31-K00269_0184_AH3M32BBXY_GCCAAT_S15_L006_R1_001.fastq.gz 3840317711 FASTQ R1_L006 unaligned CPTAC3 f42869fb-76c2-4126-98b5-13345c6a056e a637e79554c64e6ec41017b021c51385 { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02553.RNA-Seq.R2_L006.T C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 190125_UNC31-K00269_0184_AH3M32BBXY_GCCAAT_S15_L006_R2_001.fastq.gz 4087460956 FASTQ R2_L006 unaligned CPTAC3 123e166f-c0f7-437f-a25c-9df6da0eba4b 9468a86d30d8c5b2ddd081b8c5b11941 { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02553.RNA-Seq.transcriptome.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 01c64ddb-dfc6-4994-9081-aeaa700acf95.rna_seq.transcriptome.gdc_realn.bam 9895737744 BAM transcriptome harmonized CPTAC3 65440c7b-d867-4348-ae4d-749c6f66f848 eed350d3a79ae6bffa85fcd77336ef02 { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02553.RNA-Seq.chimeric.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 b82f8174-6c18-452c-ac63-f021e7c71406.rna_seq.chimeric.gdc_realn.bam 120191860 BAM chimeric harmonized CPTAC3 85553214-f1ce-4779-9848-09bf89c80b99 bdb9121d04cc1fbc2f7c10e4b033fe8b { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02553.RNA-Seq.genomic.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 b82f8174-6c18-452c-ac63-f021e7c71406.rna_seq.genomic.gdc_realn.bam 8174395520 BAM genomic harmonized CPTAC3 b7a14d21-ff85-4d86-aa82-dc4a33fd404c 1e9b53f27d218135d2110d32fed56d66 { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02553.RNA-Seq.R1_L006.T C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 190125_UNC31-K00269_0184_AH3M32BBXY_GCCAAT_S15_L006_R1_001.fastq.gz 3840317711 FASTQ R1_L006 unaligned CPTAC3 f42869fb-76c2-4126-98b5-13345c6a056e a637e79554c64e6ec41017b021c51385 { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02553.RNA-Seq.R2_L006.T C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 190125_UNC31-K00269_0184_AH3M32BBXY_GCCAAT_S15_L006_R2_001.fastq.gz 4087460956 FASTQ R2_L006 unaligned CPTAC3 123e166f-c0f7-437f-a25c-9df6da0eba4b 9468a86d30d8c5b2ddd081b8c5b11941 { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-02553.RNA-Seq.transcriptome.T.hg38 C3L-02553 CCRCC RNA-Seq tumor CPT0161790009 b82f8174-6c18-452c-ac63-f021e7c71406.rna_seq.transcriptome.gdc_realn.bam 11298942866 BAM transcriptome harmonized CPTAC3 c3c97092-70cf-4c8f-8d64-29600b77d5a9 c8ec72154bd2955b779d28a0e5b38626 { 'aliquot_tag': 'ALQ_66da3d0', 'gdc_sample_type': 'Primary Tumor' } C3L-02553.WGS.N C3L-02553 CCRCC WGS blood_normal CPT0162560002 CPT0162560002.WholeGenome.RP-1303.bam 70861150095 BAM aligned CPTAC3 695f95df-7a51-478b-b2d3-f8532c24cec0 1dee42692d6f103f1a1f2fc899bbca0f { 'aliquot_tag': 'ALQ_6fcf561f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02553.WGS.N.hg38 C3L-02553 CCRCC WGS blood_normal CPT0162560002 46f72fde-bfa9-4473-b02e-2fcf6ba7e9ad_wgs_gdc_realn.bam 104396358325 BAM harmonized CPTAC3 87a421dd-8e22-4e24-8577-36ffc94a34d6 5f5be0560cad1747c82d28631adcf9cd { 'aliquot_tag': 'ALQ_6fcf561f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02553.WGS.T C3L-02553 CCRCC WGS tumor CPT0161790006 CPT0161790006.WholeGenome.RP-1303.bam 68248904842 BAM aligned CPTAC3 0b5292ff-ae88-4716-84ce-4bf2ab755b82 0a62cf8a09dd8b8863c6f45e7ba523e0 { 'aliquot_tag': 'ALQ_96d2be41', 'gdc_sample_type': 'Primary Tumor' } @@ -10893,13 +11661,16 @@ C3L-02555.MethArray.Green.T C3L-02555 UCEC Methylation Array tumor CPT0128370006 C3L-02555.MethArray.Red.T C3L-02555 UCEC Methylation Array tumor CPT0128370006 203220070217_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 893e59e0-23f2-4133-a480-8c34721c1fc4 7253d2b1aa4df33f7a0d2e4def4535f6 { 'aliquot_tag': 'ALQ_a3a1091f', 'gdc_sample_type': 'Primary Tumor' } C3L-02555.miRNA-Seq.T C3L-02555 UCEC miRNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0176_AHYGLVBBXX_GAGTGG_S23_L004_R1_001.unaln.bam 223654278 BAM unaligned CPTAC3 bc1f004f-1008-4d36-8d91-39f514305f2e 7a3d1f0e8119fac07d8ad8daf35f7674 { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor' } C3L-02555.miRNA-Seq.T.hg38 C3L-02555 UCEC miRNA-Seq tumor CPT0128370009 06a76c30-395d-42a5-83df-728edc0fda05_mirnaseq_gdc_realn.bam 247777622 BAM harmonized CPTAC3 adcfc22e-0192-4b99-ad2f-fd566cd846f1 26a11975eb6f201fd2aed6fb5c4b1ec6 { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02555.RNA-Seq.chimeric.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 4bdd2e9c-61ea-4792-80df-44dbb910d677.rna_seq.chimeric.gdc_realn.bam 84626572 BAM chimeric harmonized CPTAC3 753489a4-fb8e-4b94-a0b8-5175958643ca a079989f54808402f9ff0cea735b97fd { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02555.RNA-Seq.genomic.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 4bdd2e9c-61ea-4792-80df-44dbb910d677.rna_seq.genomic.gdc_realn.bam 8306114351 BAM genomic harmonized CPTAC3 3c6e3d93-fb44-4e71-8af1-7a3e4301ec68 dac17e81e166ba966d81d5952f3ad40a { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02555.RNA-Seq.R1_L001.T C3L-02555 UCEC RNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTGAT_S1_L001_R1_001.fastq.gz 3724233412 FASTQ R1_L001 unaligned CPTAC3 db713eb3-15ae-4a94-aeab-bdca4eeba52d 0175608820bad1141ca4985460f5cc2f { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02555.RNA-Seq.R1_.T C3L-02555 UCEC RNA-Seq tumor CPT0350210001 20210729_P3_B7_WB7988-Plate3_S19_R1_001.fastq.gz 4675218030 FASTQ R1_ unaligned CPTAC3 5fec198b-7e93-43a0-a011-38863cef4493 764cea8b7b496b27665d1c819ee9fc00 { 'aliquot_tag': 'ALQ_6e05d541', 'gdc_sample_type': 'Primary Tumor' } -C3L-02555.RNA-Seq.R2_L001.T C3L-02555 UCEC RNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTGAT_S1_L001_R2_001.fastq.gz 3935640920 FASTQ R2_L001 unaligned CPTAC3 69243744-6ba4-4e00-a51a-6e4189ad24c5 94f9fab35b44314363fb3ddd06606ccb { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02555.RNA-Seq.R2_.T C3L-02555 UCEC RNA-Seq tumor CPT0350210001 20210729_P3_B7_WB7988-Plate3_S19_R2_001.fastq.gz 4739616541 FASTQ R2_ unaligned CPTAC3 705718a5-26b1-4317-ac7e-b81672715aa7 6f4eaaf911481b5ad6b19a872309a303 { 'aliquot_tag': 'ALQ_6e05d541', 'gdc_sample_type': 'Primary Tumor' } -C3L-02555.RNA-Seq.transcriptome.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 4bdd2e9c-61ea-4792-80df-44dbb910d677.rna_seq.transcriptome.gdc_realn.bam 8431773710 BAM transcriptome harmonized CPTAC3 6e877715-3f22-4674-ab8c-b5aa0384ddf7 2b38b90ae23323f6147bc982656150d7 { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02555.RNA-Seq.chimeric.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 6d5cc9ee-cb5c-4d6e-b0c2-a3fc6f0700c5.rna_seq.chimeric.gdc_realn.bam 84608145 BAM chimeric harmonized CPTAC3 3ca42d26-c5d0-491d-9fe7-fa0b1aa86cbc 0dfb577ac191ab9cac2c3e05ddf64070 { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02555.RNA-Seq.chimeric.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0350210001 1e91e5de-1a29-4b7d-9f83-afc2a06bb6bc.rna_seq.chimeric.gdc_realn.bam 195093880 BAM chimeric harmonized CPTAC3 cf25bc9f-3a4a-4744-aefe-4f5f0f566e05 6b8d38eba1fa2f2fba90809ffb6dadb9 { 'aliquot_tag': 'ALQ_6e05d541', 'gdc_sample_type': 'Primary Tumor' } +C3L-02555.RNA-Seq.genomic.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 6d5cc9ee-cb5c-4d6e-b0c2-a3fc6f0700c5.rna_seq.genomic.gdc_realn.bam 8307365796 BAM genomic harmonized CPTAC3 4da75c88-f92b-44c8-81be-8398b4a53fc9 12eec0e1eb1ebcfd8f07b3e4f6958822 { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02555.RNA-Seq.genomic.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0350210001 1e91e5de-1a29-4b7d-9f83-afc2a06bb6bc.rna_seq.genomic.gdc_realn.bam 8502624893 BAM genomic harmonized CPTAC3 469d7a01-e650-4326-8104-3f32dd0f049a d2a34a603884b5aba6b6f26eef65ce80 { 'aliquot_tag': 'ALQ_6e05d541', 'gdc_sample_type': 'Primary Tumor' } +C3L-02555.RNA-Seq.R1_L001.T C3L-02555 UCEC RNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTGAT_S1_L001_R1_001.fastq.gz 3724233412 FASTQ R1_L001 unaligned CPTAC3 db713eb3-15ae-4a94-aeab-bdca4eeba52d 0175608820bad1141ca4985460f5cc2f { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02555.RNA-Seq.R2_L001.T C3L-02555 UCEC RNA-Seq tumor CPT0128370009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTGAT_S1_L001_R2_001.fastq.gz 3935640920 FASTQ R2_L001 unaligned CPTAC3 69243744-6ba4-4e00-a51a-6e4189ad24c5 94f9fab35b44314363fb3ddd06606ccb { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02555.RNA-Seq.T C3L-02555 UCEC RNA-Seq tumor CPT0350210001 20210729_P3_B7_WB7988-Plate3_S19_R1_001.fastq.gz 4675218030 FASTQ unaligned CPTAC3 5fec198b-7e93-43a0-a011-38863cef4493 764cea8b7b496b27665d1c819ee9fc00 +C3L-02555.RNA-Seq.T C3L-02555 UCEC RNA-Seq tumor CPT0350210001 20210729_P3_B7_WB7988-Plate3_S19_R2_001.fastq.gz 4739616541 FASTQ unaligned CPTAC3 705718a5-26b1-4317-ac7e-b81672715aa7 6f4eaaf911481b5ad6b19a872309a303 +C3L-02555.RNA-Seq.transcriptome.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0128370009 6d5cc9ee-cb5c-4d6e-b0c2-a3fc6f0700c5.rna_seq.transcriptome.gdc_realn.bam 9638455336 BAM transcriptome harmonized CPTAC3 3a39c50b-dcd7-40f9-b3a3-dd31ccb43cac aacae1ee53547a7532413f698d172556 { 'aliquot_tag': 'ALQ_331e148e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02555.RNA-Seq.transcriptome.T.hg38 C3L-02555 UCEC RNA-Seq tumor CPT0350210001 1e91e5de-1a29-4b7d-9f83-afc2a06bb6bc.rna_seq.transcriptome.gdc_realn.bam 3943878050 BAM transcriptome harmonized CPTAC3 a44f7df5-b5c6-4d39-bb7b-8099587a9d7b 27f41ad499de44f3af05bf0c4c9c3108 { 'aliquot_tag': 'ALQ_6e05d541', 'gdc_sample_type': 'Primary Tumor' } C3L-02555.WGS.N C3L-02555 UCEC WGS blood_normal CPT0129420002 CPT0129420002.WholeGenome.RP-1303.bam 57666240904 BAM aligned CPTAC3 e2ebcbcc-ff64-4199-b35d-58971bbf9789 90ec2eb35cd64ab74a1a1b62fda3668f { 'aliquot_tag': 'ALQ_d75e797a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02555.WGS.N.hg38 C3L-02555 UCEC WGS blood_normal CPT0129420002 e14b2ac5-d3ba-432b-b415-9943d761bd25_wgs_gdc_realn.bam 84653929323 BAM harmonized CPTAC3 5a4876c8-413d-400b-b6f2-0d68e3a90181 c318d30cb059961c5399232f2a91a6b6 { 'aliquot_tag': 'ALQ_d75e797a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02555.WGS.T C3L-02555 UCEC WGS tumor CPT0128370006 CPT0128370006.WholeGenome.RP-1303.bam 55020507589 BAM aligned CPTAC3 88d22ef6-123f-490f-af6c-61ad5edbdd91 2a16b80ca7c0d6f5128900bb09939ea0 { 'aliquot_tag': 'ALQ_a3a1091f', 'gdc_sample_type': 'Primary Tumor' } @@ -10916,16 +11687,16 @@ C3L-02556.miRNA-Seq.A C3L-02556 CCRCC miRNA-Seq tissue_normal CPT0161840009 1901 C3L-02556.miRNA-Seq.A.hg38 C3L-02556 CCRCC miRNA-Seq tissue_normal CPT0161840009 8d33f9c5-3c14-4040-894f-62a2898a6b37_mirnaseq_gdc_realn.bam 239963425 BAM harmonized CPTAC3 6f871282-16ca-4d26-9f3f-1e728a3df0c8 9cf219a53c3dad9bfb07b2af78149900 { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02556.miRNA-Seq.T C3L-02556 CCRCC miRNA-Seq tumor CPT0161820009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACTCA_S23_L003_R1_001.unaln.bam 224869141 BAM unaligned CPTAC3 67e0b0c9-3967-4b58-85e8-f629be62fefe 3b75767c76c6b06b9739ebd81eb632f4 { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor' } C3L-02556.miRNA-Seq.T.hg38 C3L-02556 CCRCC miRNA-Seq tumor CPT0161820009 de21b996-2754-4c45-a4d2-d6237167f312_mirnaseq_gdc_realn.bam 248239200 BAM harmonized CPTAC3 9f533623-afd1-4888-821a-261cff0cbf78 e55a0056a05ce78d33fca45110771021 { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor' } -C3L-02556.RNA-Seq.chimeric.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 ae03b846-be4e-45f2-aa02-67983869fcc3.rna_seq.chimeric.gdc_realn.bam 106762542 BAM chimeric harmonized CPTAC3 aacf01e9-09e4-4a84-b1a1-afb15973ce40 db017fbfac82b0dff1c76c22acf06276 { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02556.RNA-Seq.chimeric.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 a6ca94e1-6546-421d-9d51-6f751ea50c63.rna_seq.chimeric.gdc_realn.bam 137623912 BAM chimeric harmonized CPTAC3 7860bef1-38b3-43a1-bbd5-c9316c856c20 40f96ae03155372a58cb174cc5ea9bfb { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor' } -C3L-02556.RNA-Seq.genomic.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 ae03b846-be4e-45f2-aa02-67983869fcc3.rna_seq.genomic.gdc_realn.bam 8966308114 BAM genomic harmonized CPTAC3 cecc40b7-1b4b-4386-83a8-4572ee19de47 44e8b4d1553b2bffb608cbd4bc8f07f4 { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02556.RNA-Seq.genomic.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 a6ca94e1-6546-421d-9d51-6f751ea50c63.rna_seq.genomic.gdc_realn.bam 7534004948 BAM genomic harmonized CPTAC3 79f2cc6c-73f1-4386-9528-cc3fe96ee3c4 3180bd5ba38953a32406514dadb4c875 { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor' } -C3L-02556.RNA-Seq.R1_L005.A C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L005_R1_001.fastq.gz 4241623160 FASTQ R1_L005 unaligned CPTAC3 b22c88c6-36ff-4e53-b1a5-937c3ee821bc 78605b5fadb77eea51e216c9cac17744 { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02556.RNA-Seq.R1_L006.T C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTTGA_S17_L006_R1_001.fastq.gz 3548087216 FASTQ R1_L006 unaligned CPTAC3 b717e57d-8708-49d4-9132-7536787e70b6 f8b16ed57a0b09bf1c8fb5eeecda2280 { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor' } -C3L-02556.RNA-Seq.R2_L005.A C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L005_R2_001.fastq.gz 4061007807 FASTQ R2_L005 unaligned CPTAC3 ee6733dd-b380-426e-945a-f18640e23c50 ef63e72e3599698b36f01b83799e94c0 { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02556.RNA-Seq.R2_L006.T C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTTGA_S17_L006_R2_001.fastq.gz 3755777817 FASTQ R2_L006 unaligned CPTAC3 b95128aa-5522-40e5-bb51-d469d38f8ccb ebc689aa61dbbba4a8c50972dc6deb1b { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor' } -C3L-02556.RNA-Seq.transcriptome.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 ae03b846-be4e-45f2-aa02-67983869fcc3.rna_seq.transcriptome.gdc_realn.bam 9104940909 BAM transcriptome harmonized CPTAC3 2bb658cc-adfa-4ad6-817b-40bf5b8d8636 a2d68ccb3588ea1680cfe6434e319a5e { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02556.RNA-Seq.transcriptome.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 a6ca94e1-6546-421d-9d51-6f751ea50c63.rna_seq.transcriptome.gdc_realn.bam 8528436690 BAM transcriptome harmonized CPTAC3 f42bee05-3f06-4a34-bef2-642a666ffe16 beab75ce292f9852a98b2e5ad399c6c4 { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor' } +C3L-02556.RNA-Seq.chimeric.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 fa664c32-efe0-4f4d-8352-9b4929afef7b.rna_seq.chimeric.gdc_realn.bam 106732796 BAM chimeric harmonized CPTAC3 effd32a3-1bae-4e40-8a56-623d0e865a36 0adf043ed3b1fb512783ec8909e196ca { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02556.RNA-Seq.chimeric.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 5eeb6861-776f-42e3-beea-e3a2d34d7af8.rna_seq.chimeric.gdc_realn.bam 137604758 BAM chimeric harmonized CPTAC3 e17c5f95-f784-4def-8fa9-1a67a244bba4 bccd9eeb432e512cb922692ad06e4a1f { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor' } +C3L-02556.RNA-Seq.genomic.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 fa664c32-efe0-4f4d-8352-9b4929afef7b.rna_seq.genomic.gdc_realn.bam 8967642182 BAM genomic harmonized CPTAC3 165edcb0-68c5-4385-b385-fedc9ec7b379 7e7679a7ef87480cd58ef3382135e4b7 { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02556.RNA-Seq.genomic.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 5eeb6861-776f-42e3-beea-e3a2d34d7af8.rna_seq.genomic.gdc_realn.bam 7535184980 BAM genomic harmonized CPTAC3 672b8f50-cbda-4fcc-b20c-659ef58468db 4db745b3eebf25cfe9cea7287429664a { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor' } +C3L-02556.RNA-Seq.R1_L005.A C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L005_R1_001.fastq.gz 4241623160 FASTQ R1_L005 unaligned CPTAC3 b22c88c6-36ff-4e53-b1a5-937c3ee821bc 78605b5fadb77eea51e216c9cac17744 { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02556.RNA-Seq.R1_L006.T C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTTGA_S17_L006_R1_001.fastq.gz 3548087216 FASTQ R1_L006 unaligned CPTAC3 b717e57d-8708-49d4-9132-7536787e70b6 f8b16ed57a0b09bf1c8fb5eeecda2280 { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02556.RNA-Seq.R2_L005.A C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L005_R2_001.fastq.gz 4061007807 FASTQ R2_L005 unaligned CPTAC3 ee6733dd-b380-426e-945a-f18640e23c50 ef63e72e3599698b36f01b83799e94c0 { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02556.RNA-Seq.R2_L006.T C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTTGA_S17_L006_R2_001.fastq.gz 3755777817 FASTQ R2_L006 unaligned CPTAC3 b95128aa-5522-40e5-bb51-d469d38f8ccb ebc689aa61dbbba4a8c50972dc6deb1b { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-02556.RNA-Seq.transcriptome.A.hg38 C3L-02556 CCRCC RNA-Seq tissue_normal CPT0161840009 fa664c32-efe0-4f4d-8352-9b4929afef7b.rna_seq.transcriptome.gdc_realn.bam 10374472145 BAM transcriptome harmonized CPTAC3 9dd8304b-87c9-4db3-bd9e-929e0763cbbe 06c3b08790c4514a308a11672e2351b7 { 'aliquot_tag': 'ALQ_fabd5b4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02556.RNA-Seq.transcriptome.T.hg38 C3L-02556 CCRCC RNA-Seq tumor CPT0161820009 5eeb6861-776f-42e3-beea-e3a2d34d7af8.rna_seq.transcriptome.gdc_realn.bam 9717419402 BAM transcriptome harmonized CPTAC3 a7afb5c6-9b8e-4a1d-a93e-9e8bcea2f06c 088e08348b902fde1b116bf6c93d9652 { 'aliquot_tag': 'ALQ_80eb2014', 'gdc_sample_type': 'Primary Tumor' } C3L-02556.WGS.A C3L-02556 CCRCC WGS tissue_normal CPT0161840006 CPT0161840006.WholeGenome.RP-1303.bam 60859386031 BAM aligned CPTAC3 13403413-d910-4204-afc4-8207487a4884 5bbf0d53641e466f48de13b183478d1e { 'aliquot_tag': 'ALQ_9f14c825', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02556.WGS.A.hg38 C3L-02556 CCRCC WGS tissue_normal CPT0161840006 b7a04871-4d92-46d1-a82a-c5633050cdb2_wgs_gdc_realn.bam 89913617320 BAM harmonized CPTAC3 d7e9ac03-bfef-4ff6-9ee2-6c2f0d1347ca 751eef3029badc6979c7d842cf5caf30 { 'aliquot_tag': 'ALQ_9f14c825', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02556.WGS.N C3L-02556 CCRCC WGS blood_normal CPT0162570002 CPT0162570002.WholeGenome.RP-1303.bam 61402066287 BAM aligned CPTAC3 00d6beb8-9232-4817-a898-0024fa02282f b7ed71bfc2067396d42275ba11c62819 { 'aliquot_tag': 'ALQ_52af7faf', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10944,18 +11715,21 @@ C3L-02557.miRNA-Seq.A C3L-02557 UCEC miRNA-Seq tissue_normal CPT0128630009 19013 C3L-02557.miRNA-Seq.A.hg38 C3L-02557 UCEC miRNA-Seq tissue_normal CPT0128630009 2f96f03b-ecbf-41f7-9c39-2b113b61101a_mirnaseq_gdc_realn.bam 288465282 BAM harmonized CPTAC3 719663f1-4297-478d-8b32-ef5eb897150c d61beff17b1c8c2122c10d0a8fb4b7ff { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02557.miRNA-Seq.T C3L-02557 UCEC miRNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTGAT_S25_L005_R1_001.unaln.bam 151191206 BAM unaligned CPTAC3 2c6231dd-e47f-4561-bc9c-789247e3c5af becb84e7a8e98a98947cdc73c8e64837 { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor' } C3L-02557.miRNA-Seq.T.hg38 C3L-02557 UCEC miRNA-Seq tumor CPT0128610009 6f760c5e-7c11-483f-8807-f556571a9802_mirnaseq_gdc_realn.bam 165071558 BAM harmonized CPTAC3 c9721d00-7df7-41c3-b857-5664c9746644 b7b5688aba07f98abf20f3b0f2a63d3d { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02557.RNA-Seq.chimeric.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 90498eda-d082-4e72-a543-80b134e8861f.rna_seq.chimeric.gdc_realn.bam 104108022 BAM chimeric harmonized CPTAC3 c34fb313-a7c6-417b-bd1f-31da2f12d364 0f81b3ed4ab8ff5d9cf8a46ddc191c72 { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02557.RNA-Seq.chimeric.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 a3db2eda-f628-4f01-88fa-417c0678f9b8.rna_seq.chimeric.gdc_realn.bam 65750624 BAM chimeric harmonized CPTAC3 3d80c62e-1609-41d5-a8cb-8d634e456a49 71e2bd436a5a208c45ada0b8ab3d9794 { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02557.RNA-Seq.genomic.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 90498eda-d082-4e72-a543-80b134e8861f.rna_seq.genomic.gdc_realn.bam 7903087465 BAM genomic harmonized CPTAC3 2f60e696-d77d-486b-bb21-513b6b2e77c4 1feef4f45ffadc2a1a550aa55b346f82 { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02557.RNA-Seq.genomic.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 a3db2eda-f628-4f01-88fa-417c0678f9b8.rna_seq.genomic.gdc_realn.bam 6894757264 BAM genomic harmonized CPTAC3 be77f820-2e56-4b50-833c-2049c26116a1 2a3ce2745a3d0bfcd055fb1f4d84dd03 { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02557.RNA-Seq.R1_L002.T C3L-02557 UCEC RNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0177_BH32KTBBXY_ATCACG_S5_L002_R1_001.fastq.gz 3291331605 FASTQ R1_L002 unaligned CPTAC3 33cbabe8-0746-41b2-ada5-7b668b6cedfc bc9b3a94ac3e270324290e71efd6d9d5 { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02557.RNA-Seq.R1_L008.A C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 190125_UNC31-K00269_0184_AH3M32BBXY_ATGTCA_S23_L008_R1_001.fastq.gz 3840681261 FASTQ R1_L008 unaligned CPTAC3 433a6377-20d2-4216-9912-d7f6f1f35013 dd87e26366cbb1858c4710b47dca0eef { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02557.RNA-Seq.R1_.T C3L-02557 UCEC RNA-Seq tumor CPT0350230001 20210729_P3_A9_WB7988-Plate3_S9_R1_001.fastq.gz 6097878206 FASTQ R1_ unaligned CPTAC3 781ed3ac-092b-4ff3-be64-da6ddc4489f5 176314d8d22175cfee7ede6a2e5c0d4a { 'aliquot_tag': 'ALQ_14c58621', 'gdc_sample_type': 'Primary Tumor' } -C3L-02557.RNA-Seq.R2_L002.T C3L-02557 UCEC RNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0177_BH32KTBBXY_ATCACG_S5_L002_R2_001.fastq.gz 3220497478 FASTQ R2_L002 unaligned CPTAC3 2cd64bbc-c722-40ab-ae0f-2b475b8ddf90 6223874e7b64097e2f71f92330015ef9 { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02557.RNA-Seq.R2_L008.A C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 190125_UNC31-K00269_0184_AH3M32BBXY_ATGTCA_S23_L008_R2_001.fastq.gz 4169058544 FASTQ R2_L008 unaligned CPTAC3 88b45d63-9c6d-41d2-b919-2008598de3bc 174d193d00931fff3355a53a1e3fde9b { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02557.RNA-Seq.R2_.T C3L-02557 UCEC RNA-Seq tumor CPT0350230001 20210729_P3_A9_WB7988-Plate3_S9_R2_001.fastq.gz 6371845610 FASTQ R2_ unaligned CPTAC3 4589e270-feaa-40e8-b8a7-51ce297b7faa f66fe2d77555b60acdfd71304bfbd740 { 'aliquot_tag': 'ALQ_14c58621', 'gdc_sample_type': 'Primary Tumor' } -C3L-02557.RNA-Seq.transcriptome.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 90498eda-d082-4e72-a543-80b134e8861f.rna_seq.transcriptome.gdc_realn.bam 7529183265 BAM transcriptome harmonized CPTAC3 685e01d5-0f6f-431a-94e5-8893af627e90 7c63c450febdbffc6644faacb2cfce31 { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02557.RNA-Seq.transcriptome.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 a3db2eda-f628-4f01-88fa-417c0678f9b8.rna_seq.transcriptome.gdc_realn.bam 7644747596 BAM transcriptome harmonized CPTAC3 1eb8e9e2-d0a5-40c5-8823-b942771a0f44 a9eb668edd724cc017271ddafbe7e2a8 { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02557.RNA-Seq.chimeric.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 f7a1ab5b-9859-4b2f-8caf-4cc89c0a8063.rna_seq.chimeric.gdc_realn.bam 104088832 BAM chimeric harmonized CPTAC3 b43a1e01-ef12-4899-8afe-09760dcb157d 449a6168075d6f2b97fb5142335021d8 { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02557.RNA-Seq.chimeric.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 e1a14b0f-a792-4f0c-8c2e-f7463e41949a.rna_seq.chimeric.gdc_realn.bam 65730898 BAM chimeric harmonized CPTAC3 4116d176-b7b3-472a-92e7-905ad5cb3a35 6cf1790785f3437f34a8e1ddd3af0b8e { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02557.RNA-Seq.chimeric.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0350230001 745b6456-49ba-4453-9f13-662609d113eb.rna_seq.chimeric.gdc_realn.bam 216126330 BAM chimeric harmonized CPTAC3 eed2fdbc-8a59-48f4-9b58-fea1446b769b 18d3520350cf8d6bedc63e84a16646e2 { 'aliquot_tag': 'ALQ_14c58621', 'gdc_sample_type': 'Primary Tumor' } +C3L-02557.RNA-Seq.genomic.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 f7a1ab5b-9859-4b2f-8caf-4cc89c0a8063.rna_seq.genomic.gdc_realn.bam 7903987536 BAM genomic harmonized CPTAC3 93ef344b-1ebb-40c8-ad54-f653b3a24eab 9d9b2be378348c577e0c376eb2109c1a { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02557.RNA-Seq.genomic.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 e1a14b0f-a792-4f0c-8c2e-f7463e41949a.rna_seq.genomic.gdc_realn.bam 6896036633 BAM genomic harmonized CPTAC3 abdc5bf9-52d0-43e5-a7da-477f4b448ebe d36a119d15d9186ae10b2a7cc7ad9143 { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02557.RNA-Seq.genomic.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0350230001 745b6456-49ba-4453-9f13-662609d113eb.rna_seq.genomic.gdc_realn.bam 10360131763 BAM genomic harmonized CPTAC3 725b5683-8640-4acc-9617-c8d592061762 a19df831c04b5c55578adbb86750e4e7 { 'aliquot_tag': 'ALQ_14c58621', 'gdc_sample_type': 'Primary Tumor' } +C3L-02557.RNA-Seq.R1_L002.T C3L-02557 UCEC RNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0177_BH32KTBBXY_ATCACG_S5_L002_R1_001.fastq.gz 3291331605 FASTQ R1_L002 unaligned CPTAC3 33cbabe8-0746-41b2-ada5-7b668b6cedfc bc9b3a94ac3e270324290e71efd6d9d5 { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02557.RNA-Seq.R1_L008.A C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 190125_UNC31-K00269_0184_AH3M32BBXY_ATGTCA_S23_L008_R1_001.fastq.gz 3840681261 FASTQ R1_L008 unaligned CPTAC3 433a6377-20d2-4216-9912-d7f6f1f35013 dd87e26366cbb1858c4710b47dca0eef { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02557.RNA-Seq.R2_L002.T C3L-02557 UCEC RNA-Seq tumor CPT0128610009 190108_UNC31-K00269_0177_BH32KTBBXY_ATCACG_S5_L002_R2_001.fastq.gz 3220497478 FASTQ R2_L002 unaligned CPTAC3 2cd64bbc-c722-40ab-ae0f-2b475b8ddf90 6223874e7b64097e2f71f92330015ef9 { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-02557.RNA-Seq.R2_L008.A C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 190125_UNC31-K00269_0184_AH3M32BBXY_ATGTCA_S23_L008_R2_001.fastq.gz 4169058544 FASTQ R2_L008 unaligned CPTAC3 88b45d63-9c6d-41d2-b919-2008598de3bc 174d193d00931fff3355a53a1e3fde9b { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02557.RNA-Seq.T C3L-02557 UCEC RNA-Seq tumor CPT0350230001 20210729_P3_A9_WB7988-Plate3_S9_R1_001.fastq.gz 6097878206 FASTQ unaligned CPTAC3 781ed3ac-092b-4ff3-be64-da6ddc4489f5 176314d8d22175cfee7ede6a2e5c0d4a +C3L-02557.RNA-Seq.T C3L-02557 UCEC RNA-Seq tumor CPT0350230001 20210729_P3_A9_WB7988-Plate3_S9_R2_001.fastq.gz 6371845610 FASTQ unaligned CPTAC3 4589e270-feaa-40e8-b8a7-51ce297b7faa f66fe2d77555b60acdfd71304bfbd740 +C3L-02557.RNA-Seq.transcriptome.A.hg38 C3L-02557 UCEC RNA-Seq tissue_normal CPT0128630009 f7a1ab5b-9859-4b2f-8caf-4cc89c0a8063.rna_seq.transcriptome.gdc_realn.bam 8748148277 BAM transcriptome harmonized CPTAC3 f70b6233-9b23-4825-8983-bfd981757ceb 38306f0e827e92ee1d3c35b89299a6c8 { 'aliquot_tag': 'ALQ_965323fd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02557.RNA-Seq.transcriptome.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0128610009 e1a14b0f-a792-4f0c-8c2e-f7463e41949a.rna_seq.transcriptome.gdc_realn.bam 8718932781 BAM transcriptome harmonized CPTAC3 36882eae-de93-4b64-9b07-d9b0dd2244cf f6b7264109a537e6077e45e674b4e12d { 'aliquot_tag': 'ALQ_ec93709d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02557.RNA-Seq.transcriptome.T.hg38 C3L-02557 UCEC RNA-Seq tumor CPT0350230001 745b6456-49ba-4453-9f13-662609d113eb.rna_seq.transcriptome.gdc_realn.bam 6493764077 BAM transcriptome harmonized CPTAC3 e9ba9b87-132c-47bf-9945-1130b1adf517 e2ee76afd154450bf2a200a50e8f685a { 'aliquot_tag': 'ALQ_14c58621', 'gdc_sample_type': 'Primary Tumor' } C3L-02557.WGS.A C3L-02557 UCEC WGS tissue_normal CPT0128630006 CPT0128630006.WholeGenome.RP-1303.bam 59734738877 BAM aligned CPTAC3 423834a1-7a65-4e12-8210-95fe71b06880 fd1abbc83d869467796a2837dd29d5ee { 'aliquot_tag': 'ALQ_6ec3e6c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02557.WGS.A.hg38 C3L-02557 UCEC WGS tissue_normal CPT0128630006 136a45ed-0c1e-4773-8d40-808c7e4f1bba_wgs_gdc_realn.bam 89315864612 BAM harmonized CPTAC3 a2b41edb-8fa2-4c34-97d2-7492d146d7d6 803223397a1003715e881c3899042fd1 { 'aliquot_tag': 'ALQ_6ec3e6c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02557.WGS.N C3L-02557 UCEC WGS blood_normal CPT0129430002 CPT0129430002.WholeGenome.RP-1303.bam 52865535379 BAM aligned CPTAC3 30e36f0d-c1c3-4a7f-9c26-651f79740fcb f6dec8c78f0101681c406b2268b2aa47 { 'aliquot_tag': 'ALQ_ea3e50ca', 'gdc_sample_type': 'Blood Derived Normal' } @@ -10976,16 +11750,16 @@ C3L-02559.miRNA-Seq.A C3L-02559 LUAD miRNA-Seq tissue_normal CPT0128300009 19013 C3L-02559.miRNA-Seq.A.hg38 C3L-02559 LUAD miRNA-Seq tissue_normal CPT0128300009 ce82dcda-bd95-430c-aa71-e8472422925f_mirnaseq_gdc_realn.bam 198479595 BAM harmonized CPTAC3 01534d80-d9e3-4d04-8b34-9e26b3391037 31546b548d771c738f75cde5254c8958 { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02559.miRNA-Seq.T C3L-02559 LUAD miRNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTTTCG_S21_L004_R1_001.unaln.bam 182357104 BAM unaligned CPTAC3 00f7447f-6d16-40d8-ab95-99c15c06884b ee537ab662db222c9176fa9f69264fd2 { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor' } C3L-02559.miRNA-Seq.T.hg38 C3L-02559 LUAD miRNA-Seq tumor CPT0128290009 10827a72-b85b-410d-bf70-b2f9f08d296a_mirnaseq_gdc_realn.bam 197529950 BAM harmonized CPTAC3 45cd39ca-9874-44c9-a90f-1f6597c88511 fb2a186abfbb52bdd9619c26a3efc9f3 { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02559.RNA-Seq.chimeric.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 bbb8f2d6-21a8-4719-aadd-119cb140fc18.rna_seq.chimeric.gdc_realn.bam 71417860 BAM chimeric harmonized CPTAC3 ab2e8d55-e0dd-4e0d-b04d-bb138effa465 bdca0b28639772f2dc6dbf2e86104c35 { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02559.RNA-Seq.chimeric.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 e3986a0d-817b-4cac-8981-501498b33a0d.rna_seq.chimeric.gdc_realn.bam 61772074 BAM chimeric harmonized CPTAC3 a0aa6ded-2544-4638-9bca-b902af00882f bc28841cc1fe3eaa4f007208e6e4d82f { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02559.RNA-Seq.genomic.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 bbb8f2d6-21a8-4719-aadd-119cb140fc18.rna_seq.genomic.gdc_realn.bam 7883623092 BAM genomic harmonized CPTAC3 a97d2f1e-cc67-441a-b1ea-8e57b7964d79 af7ddd6fdab283b5570df48ef2294e55 { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02559.RNA-Seq.genomic.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 e3986a0d-817b-4cac-8981-501498b33a0d.rna_seq.genomic.gdc_realn.bam 7960064650 BAM genomic harmonized CPTAC3 50ce3dbd-e243-4fbc-b6f6-a25f013ea255 a6c05c178692837779595472458da4f4 { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02559.RNA-Seq.R1_L001.T C3L-02559 LUAD RNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0177_BH32KTBBXY_CGTACG_S3_L001_R1_001.fastq.gz 3823360772 FASTQ R1_L001 unaligned CPTAC3 ab7aee22-bbe6-44ff-b4a1-eb747707105f ef562ecb8be3d35a6bc2b55e61dc5895 { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02559.RNA-Seq.R1_L007.A C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 190125_UNC31-K00269_0184_AH3M32BBXY_CTTGTA_S21_L007_R1_001.fastq.gz 3744251953 FASTQ R1_L007 unaligned CPTAC3 8f33216c-d930-4b62-b486-fc174d828c87 2daa993206248c1d8985a62c0d18ef0d { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02559.RNA-Seq.R2_L001.T C3L-02559 LUAD RNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0177_BH32KTBBXY_CGTACG_S3_L001_R2_001.fastq.gz 4132241962 FASTQ R2_L001 unaligned CPTAC3 7813027e-f048-44fb-8774-5fde1c2f3a44 0c980645ddf5caa66c5f5bb34e535a0e { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02559.RNA-Seq.R2_L007.A C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 190125_UNC31-K00269_0184_AH3M32BBXY_CTTGTA_S21_L007_R2_001.fastq.gz 3954305966 FASTQ R2_L007 unaligned CPTAC3 eb96735b-b6f3-4f09-ac7e-4687d395bccd f4d163486ae23951debbe3cc7d32fced { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02559.RNA-Seq.transcriptome.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 bbb8f2d6-21a8-4719-aadd-119cb140fc18.rna_seq.transcriptome.gdc_realn.bam 8204456165 BAM transcriptome harmonized CPTAC3 3843851d-052c-4967-a1cc-fe8f5995f2b0 77de00534a108ea90d90bd0f83c77457 { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02559.RNA-Seq.transcriptome.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 e3986a0d-817b-4cac-8981-501498b33a0d.rna_seq.transcriptome.gdc_realn.bam 9656629838 BAM transcriptome harmonized CPTAC3 2ea083d4-048b-4feb-8ec8-3dc4d14c7f0a 90adb5bb25e226eaf0c9a446c581420e { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02559.RNA-Seq.chimeric.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 7e4b9978-325d-49a9-a974-e32e68fd0d2d.rna_seq.chimeric.gdc_realn.bam 71397249 BAM chimeric harmonized CPTAC3 1589a3ec-0cbb-4b25-b9ae-e8c774345e96 dc95f6aa33003cd1f7de81b29bf8ad37 { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02559.RNA-Seq.chimeric.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 c11c8bd4-8964-4008-a588-a79b45461e94.rna_seq.chimeric.gdc_realn.bam 61751028 BAM chimeric harmonized CPTAC3 9f2a8ed8-3291-47cc-95fa-e52fcc661a8f e744a491e090bee1c2ccc3e51919c57f { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02559.RNA-Seq.genomic.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 7e4b9978-325d-49a9-a974-e32e68fd0d2d.rna_seq.genomic.gdc_realn.bam 7884666956 BAM genomic harmonized CPTAC3 3e0bc628-9ec3-4f41-855c-bb74fe84fc39 e23d4aa47ac7a89c93d6ba3e3ca2d8f5 { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02559.RNA-Seq.genomic.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 c11c8bd4-8964-4008-a588-a79b45461e94.rna_seq.genomic.gdc_realn.bam 7961523673 BAM genomic harmonized CPTAC3 b10f776a-7f5f-4ad8-8210-af13c3a5ff86 675770fc286ff2b54a35f4ed42ea928c { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02559.RNA-Seq.R1_L001.T C3L-02559 LUAD RNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0177_BH32KTBBXY_CGTACG_S3_L001_R1_001.fastq.gz 3823360772 FASTQ R1_L001 unaligned CPTAC3 ab7aee22-bbe6-44ff-b4a1-eb747707105f ef562ecb8be3d35a6bc2b55e61dc5895 { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02559.RNA-Seq.R1_L007.A C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 190125_UNC31-K00269_0184_AH3M32BBXY_CTTGTA_S21_L007_R1_001.fastq.gz 3744251953 FASTQ R1_L007 unaligned CPTAC3 8f33216c-d930-4b62-b486-fc174d828c87 2daa993206248c1d8985a62c0d18ef0d { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-02559.RNA-Seq.R2_L001.T C3L-02559 LUAD RNA-Seq tumor CPT0128290009 190108_UNC31-K00269_0177_BH32KTBBXY_CGTACG_S3_L001_R2_001.fastq.gz 4132241962 FASTQ R2_L001 unaligned CPTAC3 7813027e-f048-44fb-8774-5fde1c2f3a44 0c980645ddf5caa66c5f5bb34e535a0e { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02559.RNA-Seq.R2_L007.A C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 190125_UNC31-K00269_0184_AH3M32BBXY_CTTGTA_S21_L007_R2_001.fastq.gz 3954305966 FASTQ R2_L007 unaligned CPTAC3 eb96735b-b6f3-4f09-ac7e-4687d395bccd f4d163486ae23951debbe3cc7d32fced { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-02559.RNA-Seq.transcriptome.A.hg38 C3L-02559 LUAD RNA-Seq tissue_normal CPT0128300009 7e4b9978-325d-49a9-a974-e32e68fd0d2d.rna_seq.transcriptome.gdc_realn.bam 9297994837 BAM transcriptome harmonized CPTAC3 e6f1351a-76e8-47cc-ae38-520a9233f6d7 fa1efbb919e73d891bb62696b6226004 { 'aliquot_tag': 'ALQ_813ec89e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02559.RNA-Seq.transcriptome.T.hg38 C3L-02559 LUAD RNA-Seq tumor CPT0128290009 c11c8bd4-8964-4008-a588-a79b45461e94.rna_seq.transcriptome.gdc_realn.bam 11007010176 BAM transcriptome harmonized CPTAC3 a4a2edba-3d5a-482f-8721-069edec4ffe4 a1fb50229d8d8b901d8b7baa7c5febf9 { 'aliquot_tag': 'ALQ_4772794a', 'gdc_sample_type': 'Primary Tumor' } C3L-02559.WGS.A C3L-02559 LUAD WGS tissue_normal CPT0128300006 CPT0128300006.WholeGenome.RP-1303.bam 60641694956 BAM aligned CPTAC3 2d7c6354-ba8a-4fd4-a146-fce5aa2a5618 989d5d9d67c745d67b0492973076c4f7 { 'aliquot_tag': 'ALQ_1181d50f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02559.WGS.A.hg38 C3L-02559 LUAD WGS tissue_normal CPT0128300006 42f4a8c2-a045-42c0-b0a2-3f54d68c76a7_wgs_gdc_realn.bam 88271559257 BAM harmonized CPTAC3 0575281c-1b27-4f15-8bef-ccc1f702b351 4ee6312307dc58f818a859f7c3353950 { 'aliquot_tag': 'ALQ_1181d50f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02559.WGS.N C3L-02559 LUAD WGS blood_normal CPT0129460002 CPT0129460002.WholeGenome.RP-1303.bam 59990251419 BAM aligned CPTAC3 db1f81ee-d4ae-469e-8c03-f89b90652780 969ae04938c361cb5a9e8f502bb42949 { 'aliquot_tag': 'ALQ_22dedfba', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11006,16 +11780,16 @@ C3L-02560.miRNA-Seq.A C3L-02560 LUAD miRNA-Seq tissue_normal CPT0128430009 19013 C3L-02560.miRNA-Seq.A.hg38 C3L-02560 LUAD miRNA-Seq tissue_normal CPT0128430009 e34f7427-29dc-4462-aedd-7fb251814110_mirnaseq_gdc_realn.bam 236849831 BAM harmonized CPTAC3 43337563-165d-4f26-8d5d-e130f1be4f60 27f884c2ba3d7ca5ce1422821b2cc84f { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02560.miRNA-Seq.T C3L-02560 LUAD miRNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0176_AHYGLVBBXX_GGTAGC_S24_L004_R1_001.unaln.bam 182342805 BAM unaligned CPTAC3 0e23e387-c68b-42b8-9921-0ce39f69f2fc 645a1714e2ed9912006ca3c005372a70 { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor' } C3L-02560.miRNA-Seq.T.hg38 C3L-02560 LUAD miRNA-Seq tumor CPT0128420009 8e5e2bf4-8464-49e7-9240-7dd29f8fd79e_mirnaseq_gdc_realn.bam 204140553 BAM harmonized CPTAC3 f34320a6-49b9-487c-a4f6-6e08d166e0b1 5359992ac5d478c76dcc66349c45750e { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor' } -C3L-02560.RNA-Seq.chimeric.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 9b81e0a3-05a9-42b4-8578-b66afe149efb.rna_seq.chimeric.gdc_realn.bam 51753333 BAM chimeric harmonized CPTAC3 42825e93-0165-4a6c-bc7d-85c93f69bd08 d4742534d8a218568ac1953735fe0234 { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02560.RNA-Seq.chimeric.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 043b31e6-6410-478e-889e-62bfcbd5dd53.rna_seq.chimeric.gdc_realn.bam 69967213 BAM chimeric harmonized CPTAC3 8efd23d7-b4bb-4b5a-bc5e-bdce4365849b ad3decacee3f6ade53fcd95c6151d079 { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor' } -C3L-02560.RNA-Seq.genomic.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 9b81e0a3-05a9-42b4-8578-b66afe149efb.rna_seq.genomic.gdc_realn.bam 8690555927 BAM genomic harmonized CPTAC3 66e630f7-3eac-4a1e-bf4f-a8f831434a16 8b4508b7c098be203b53efbf4aa67f20 { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02560.RNA-Seq.genomic.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 043b31e6-6410-478e-889e-62bfcbd5dd53.rna_seq.genomic.gdc_realn.bam 8822615866 BAM genomic harmonized CPTAC3 ac551daa-83ff-48b6-a02f-330e2208fdf3 378ad6c6dc422bfcf14ebc663e688530 { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor' } -C3L-02560.RNA-Seq.R1_L001.T C3L-02560 LUAD RNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0177_BH32KTBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4000937527 FASTQ R1_L001 unaligned CPTAC3 f27b1c4d-286d-4e6a-be1f-25990e08b452 01157b572168fc05c9cf241a7cae39b3 { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor' } -C3L-02560.RNA-Seq.R1_L008.A C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTTCC_S22_L008_R1_001.fastq.gz 3940099448 FASTQ R1_L008 unaligned CPTAC3 51c04bce-ad69-469b-98dc-8c69a227c7be 1c3087d86bd75500700ab73aa57a70e9 { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02560.RNA-Seq.R2_L001.T C3L-02560 LUAD RNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0177_BH32KTBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4271249432 FASTQ R2_L001 unaligned CPTAC3 815eeddf-9d16-404d-ab02-0e79d61f2d10 1c9e3743e400e4feda96d85180c87167 { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor' } -C3L-02560.RNA-Seq.R2_L008.A C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTTCC_S22_L008_R2_001.fastq.gz 4175641603 FASTQ R2_L008 unaligned CPTAC3 7464a550-6337-4d64-ba60-5ed008c79aea 72940a369bcf06836d598e7e0ccded7b { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02560.RNA-Seq.transcriptome.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 9b81e0a3-05a9-42b4-8578-b66afe149efb.rna_seq.transcriptome.gdc_realn.bam 8865026300 BAM transcriptome harmonized CPTAC3 94c58b93-f624-4b66-aed0-f3acbd7996a9 ff71907844c58d7bcb3dfe3d5822266e { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02560.RNA-Seq.transcriptome.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 043b31e6-6410-478e-889e-62bfcbd5dd53.rna_seq.transcriptome.gdc_realn.bam 10214739459 BAM transcriptome harmonized CPTAC3 09f197c4-94ce-41fc-b1c7-c9dd05641b12 7afa8d709bc5a76b899905939ea818f9 { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor' } +C3L-02560.RNA-Seq.chimeric.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 3c445bc0-cb46-438b-bddf-4b845d19dba0.rna_seq.chimeric.gdc_realn.bam 51744730 BAM chimeric harmonized CPTAC3 a1120493-157a-46cc-83d6-06c86e74d78b e2f27ec9f69d7a140cec4fa7c054347e { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02560.RNA-Seq.chimeric.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 831981ec-5f70-475e-8fb1-a10485de65b0.rna_seq.chimeric.gdc_realn.bam 69987282 BAM chimeric harmonized CPTAC3 c632bb32-e560-4def-8e43-d63cf2272fcf 8ff5863856c56fd59bf63e66505a0189 { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor' } +C3L-02560.RNA-Seq.genomic.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 3c445bc0-cb46-438b-bddf-4b845d19dba0.rna_seq.genomic.gdc_realn.bam 8692283968 BAM genomic harmonized CPTAC3 96bf8720-47df-4404-b308-8e7a6e64ead0 d5c21c6eb6cb6ed381fccc5d29177e5f { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02560.RNA-Seq.genomic.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 831981ec-5f70-475e-8fb1-a10485de65b0.rna_seq.genomic.gdc_realn.bam 8825479469 BAM genomic harmonized CPTAC3 589afb6b-c9d2-4a1d-ba55-cc29ffef0742 ac3d6d362cdae074d592960fe16ccccd { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor' } +C3L-02560.RNA-Seq.R1_L001.T C3L-02560 LUAD RNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0177_BH32KTBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4000937527 FASTQ R1_L001 unaligned CPTAC3 f27b1c4d-286d-4e6a-be1f-25990e08b452 01157b572168fc05c9cf241a7cae39b3 { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02560.RNA-Seq.R1_L008.A C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTTCC_S22_L008_R1_001.fastq.gz 3940099448 FASTQ R1_L008 unaligned CPTAC3 51c04bce-ad69-469b-98dc-8c69a227c7be 1c3087d86bd75500700ab73aa57a70e9 { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02560.RNA-Seq.R2_L001.T C3L-02560 LUAD RNA-Seq tumor CPT0128420009 190108_UNC31-K00269_0177_BH32KTBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4271249432 FASTQ R2_L001 unaligned CPTAC3 815eeddf-9d16-404d-ab02-0e79d61f2d10 1c9e3743e400e4feda96d85180c87167 { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02560.RNA-Seq.R2_L008.A C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTTCC_S22_L008_R2_001.fastq.gz 4175641603 FASTQ R2_L008 unaligned CPTAC3 7464a550-6337-4d64-ba60-5ed008c79aea 72940a369bcf06836d598e7e0ccded7b { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02560.RNA-Seq.transcriptome.A.hg38 C3L-02560 LUAD RNA-Seq tissue_normal CPT0128430009 3c445bc0-cb46-438b-bddf-4b845d19dba0.rna_seq.transcriptome.gdc_realn.bam 9983102897 BAM transcriptome harmonized CPTAC3 02729671-4ffd-4791-8501-82dad69362a9 dc1d62f06e1bf1a410a6d1bc74fe9454 { 'aliquot_tag': 'ALQ_db9b82f6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02560.RNA-Seq.transcriptome.T.hg38 C3L-02560 LUAD RNA-Seq tumor CPT0128420009 831981ec-5f70-475e-8fb1-a10485de65b0.rna_seq.transcriptome.gdc_realn.bam 11494030356 BAM transcriptome harmonized CPTAC3 4e196ffc-de88-4b20-9034-39b4decd021a 971d02dd290f9ab41c1f928abd495f81 { 'aliquot_tag': 'ALQ_e6fbab46', 'gdc_sample_type': 'Primary Tumor' } C3L-02560.WGS.A C3L-02560 LUAD WGS tissue_normal CPT0128430006 CPT0128430006.WholeGenome.RP-1303.bam 72688910012 BAM aligned CPTAC3 1ab787f1-1529-4789-b75c-8aa9475f12f3 090a32e9b6b5d273f9bb1736a6ad9745 { 'aliquot_tag': 'ALQ_4b249f67', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02560.WGS.A.hg38 C3L-02560 LUAD WGS tissue_normal CPT0128430006 3816b40f-a0a2-4e60-a511-ad06451fccba_wgs_gdc_realn.bam 105559487770 BAM harmonized CPTAC3 287a55e9-63ea-4158-b309-4213e1022487 6b420977876b221a25403549045f886a { 'aliquot_tag': 'ALQ_4b249f67', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02560.WGS.N C3L-02560 LUAD WGS blood_normal CPT0129440002 CPT0129440002.WholeGenome.RP-1303.bam 53218697338 BAM aligned CPTAC3 9c4c3cc8-d31d-4fbd-aec2-608d3fbeb820 e18d207ffce11baa632b41959e67a798 { 'aliquot_tag': 'ALQ_581e8cda', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11036,16 +11810,16 @@ C3L-02601.miRNA-Seq.A C3L-02601 LUAD miRNA-Seq tissue_normal CPT0128340009 19013 C3L-02601.miRNA-Seq.A.hg38 C3L-02601 LUAD miRNA-Seq tissue_normal CPT0128340009 e70c3ce5-99f4-455e-a91a-a536dc1773d0_mirnaseq_gdc_realn.bam 315664946 BAM harmonized CPTAC3 83a2b75a-2341-454b-8f28-b9672dcd12a9 6bc03dec2ae8e6d861bada710771c76d { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02601.miRNA-Seq.T C3L-02601 LUAD miRNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0176_AHYGLVBBXX_CGTACG_S22_L004_R1_001.unaln.bam 215868293 BAM unaligned CPTAC3 fee600e5-4e79-4139-bd72-3cc7e56fe6a9 9a4a09ba3a2aece2254e123060d94da1 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor' } C3L-02601.miRNA-Seq.T.hg38 C3L-02601 LUAD miRNA-Seq tumor CPT0128330009 28523112-4c6a-4ac9-94e9-a471ea735c0a_mirnaseq_gdc_realn.bam 235391640 BAM harmonized CPTAC3 68dc9819-ba82-4b95-85f6-acfa33f81f0f ed651bc522431b7b3b911129fc0dd2a6 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02601.RNA-Seq.chimeric.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 727e01b4-1cb2-4557-9d98-e77df18107e7.rna_seq.chimeric.gdc_realn.bam 58926986 BAM chimeric harmonized CPTAC3 0fca6693-b29f-4e79-9a39-d5a02db7eb5b d3170f0a4d06037d2f87ac912a4fab3b { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02601.RNA-Seq.chimeric.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 0e77c8b6-48e8-4547-8878-2eb592da18ae.rna_seq.chimeric.gdc_realn.bam 70414843 BAM chimeric harmonized CPTAC3 4d6cff4f-7021-4c64-9388-d96b53a057d4 c7b1afb80b027a67cbd820631c1c4df1 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02601.RNA-Seq.genomic.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 727e01b4-1cb2-4557-9d98-e77df18107e7.rna_seq.genomic.gdc_realn.bam 7490848230 BAM genomic harmonized CPTAC3 584a148f-00fa-4458-9319-1189bb05b50a 9cc93c395049d001b2bd651941828376 { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02601.RNA-Seq.genomic.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 0e77c8b6-48e8-4547-8878-2eb592da18ae.rna_seq.genomic.gdc_realn.bam 9197857533 BAM genomic harmonized CPTAC3 6c7ac150-1ecb-4e75-9044-72bcfd66536e 1d734b592fbad862332ef307a64d81fd { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02601.RNA-Seq.R1_L001.T C3L-02601 LUAD RNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0177_BH32KTBBXY_GAGTGG_S2_L001_R1_001.fastq.gz 4010737292 FASTQ R1_L001 unaligned CPTAC3 e4d09861-9283-4247-9875-86db45537856 c806e701119097da4bbd23a34809e6d9 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02601.RNA-Seq.R1_L008.A C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L008_R1_001.fastq.gz 3367179400 FASTQ R1_L008 unaligned CPTAC3 34399ca8-37a1-44a2-aa17-feafa1f65fa4 336c096950ea32a8c7b99bdfb188f4c7 { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02601.RNA-Seq.R2_L001.T C3L-02601 LUAD RNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0177_BH32KTBBXY_GAGTGG_S2_L001_R2_001.fastq.gz 4256362118 FASTQ R2_L001 unaligned CPTAC3 26763bb2-4879-4636-b85d-d245a59e8518 4f09ba31ba543ec5fe3b819bb3642fb5 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02601.RNA-Seq.R2_L008.A C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L008_R2_001.fastq.gz 3548408011 FASTQ R2_L008 unaligned CPTAC3 2c8b66ba-7d17-4911-9111-0b8d3daec383 fa4bce28c5801c47f07a1192b19a4cdd { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02601.RNA-Seq.transcriptome.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 727e01b4-1cb2-4557-9d98-e77df18107e7.rna_seq.transcriptome.gdc_realn.bam 8093501955 BAM transcriptome harmonized CPTAC3 f8198c07-e6a2-4aa2-9e88-a8218ccc4ada af8f0c859f1b9074b2c3415d329cf797 { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02601.RNA-Seq.transcriptome.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 0e77c8b6-48e8-4547-8878-2eb592da18ae.rna_seq.transcriptome.gdc_realn.bam 10253887192 BAM transcriptome harmonized CPTAC3 308da82a-80e8-4900-945a-51686678ee52 d351cb37080d89890e7f12dae890f050 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02601.RNA-Seq.chimeric.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 c4abafc6-d4f5-4bc2-b6a8-1c887cf63392.rna_seq.chimeric.gdc_realn.bam 58904118 BAM chimeric harmonized CPTAC3 4c1bd88c-f2ce-4257-8a7a-ec1ac157b78e b034a49b2af4eca394b5ffc635f07f34 { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02601.RNA-Seq.chimeric.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 23f86630-7b63-424b-ae9a-1a1e84833051.rna_seq.chimeric.gdc_realn.bam 70406696 BAM chimeric harmonized CPTAC3 6113fd17-4920-430e-b7ca-93c97f8594bb e49044c63a63212013c8e466b5705318 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02601.RNA-Seq.genomic.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 c4abafc6-d4f5-4bc2-b6a8-1c887cf63392.rna_seq.genomic.gdc_realn.bam 7492308605 BAM genomic harmonized CPTAC3 bd2ce067-d5a4-4120-9c7e-ba96bf8b7709 c29687ae62ec45f21df11d5de9e8f30f { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02601.RNA-Seq.genomic.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 23f86630-7b63-424b-ae9a-1a1e84833051.rna_seq.genomic.gdc_realn.bam 9199838906 BAM genomic harmonized CPTAC3 c3aecff4-1a4d-4084-a9d2-5dcfda715d39 462256d4c0d44a1da798d4bee0b38390 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02601.RNA-Seq.R1_L001.T C3L-02601 LUAD RNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0177_BH32KTBBXY_GAGTGG_S2_L001_R1_001.fastq.gz 4010737292 FASTQ R1_L001 unaligned CPTAC3 e4d09861-9283-4247-9875-86db45537856 c806e701119097da4bbd23a34809e6d9 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02601.RNA-Seq.R1_L008.A C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L008_R1_001.fastq.gz 3367179400 FASTQ R1_L008 unaligned CPTAC3 34399ca8-37a1-44a2-aa17-feafa1f65fa4 336c096950ea32a8c7b99bdfb188f4c7 { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02601.RNA-Seq.R2_L001.T C3L-02601 LUAD RNA-Seq tumor CPT0128330009 190108_UNC31-K00269_0177_BH32KTBBXY_GAGTGG_S2_L001_R2_001.fastq.gz 4256362118 FASTQ R2_L001 unaligned CPTAC3 26763bb2-4879-4636-b85d-d245a59e8518 4f09ba31ba543ec5fe3b819bb3642fb5 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02601.RNA-Seq.R2_L008.A C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L008_R2_001.fastq.gz 3548408011 FASTQ R2_L008 unaligned CPTAC3 2c8b66ba-7d17-4911-9111-0b8d3daec383 fa4bce28c5801c47f07a1192b19a4cdd { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02601.RNA-Seq.transcriptome.A.hg38 C3L-02601 LUAD RNA-Seq tissue_normal CPT0128340009 c4abafc6-d4f5-4bc2-b6a8-1c887cf63392.rna_seq.transcriptome.gdc_realn.bam 9162770911 BAM transcriptome harmonized CPTAC3 f04b03d5-a232-4cd7-a459-a38f3f43cdbb 5a38d1b451c5f0f7947ec319b80c520d { 'aliquot_tag': 'ALQ_74be6e5e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02601.RNA-Seq.transcriptome.T.hg38 C3L-02601 LUAD RNA-Seq tumor CPT0128330009 23f86630-7b63-424b-ae9a-1a1e84833051.rna_seq.transcriptome.gdc_realn.bam 11646228894 BAM transcriptome harmonized CPTAC3 186c2494-d69f-49ea-9aa9-17c7c4d67082 259e427d5c9f4aca3d850c6e7b76a5e8 { 'aliquot_tag': 'ALQ_c69eb24e', 'gdc_sample_type': 'Primary Tumor' } C3L-02601.WGS.A C3L-02601 LUAD WGS tissue_normal CPT0128340006 CPT0128340006.WholeGenome.RP-1303.bam 62668411196 BAM aligned CPTAC3 3a85647a-4243-4f86-999d-59e227eb83fd 9903a18ad0fac092143ec955b87d7c38 { 'aliquot_tag': 'ALQ_e40173cf', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02601.WGS.A.hg38 C3L-02601 LUAD WGS tissue_normal CPT0128340006 e6f520a2-ddc2-4fb3-815e-bb385cadb15a_wgs_gdc_realn.bam 91191515698 BAM harmonized CPTAC3 aa62746c-0eb6-4239-8a78-0151b6f60ad7 c5d5f7b98bdbe1bab953cef5dcfc672d { 'aliquot_tag': 'ALQ_e40173cf', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02601.WGS.N C3L-02601 LUAD WGS blood_normal CPT0129450002 CPT0129450002.WholeGenome.RP-1303.bam 61865848563 BAM aligned CPTAC3 3646e953-e073-4912-aea7-46eff9a57ea9 1e63ba001d4481b13d861a48c5fe4bf5 { 'aliquot_tag': 'ALQ_657ea56a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11064,18 +11838,21 @@ C3L-02602.miRNA-Seq.A C3L-02602 UCEC miRNA-Seq tissue_normal CPT0113930009 19013 C3L-02602.miRNA-Seq.A.hg38 C3L-02602 UCEC miRNA-Seq tissue_normal CPT0113930009 6bac9dda-aa22-4dda-af4f-0334452b0181_mirnaseq_gdc_realn.bam 290598885 BAM harmonized CPTAC3 f44e378d-ee47-49f1-be8c-280b659339df 309ccea7f79f2110f5161b72bd3bcbb9 { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02602.miRNA-Seq.T C3L-02602 UCEC miRNA-Seq tumor CPT0113910006 190108_UNC31-K00269_0176_AHYGLVBBXX_CACTCA_S32_L003_R1_001.unaln.bam 169735024 BAM unaligned CPTAC3 d0c5e624-5072-443b-b858-eafbc43da6dd e079e6059b244315bc2492137c40eb0a { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor' } C3L-02602.miRNA-Seq.T.hg38 C3L-02602 UCEC miRNA-Seq tumor CPT0113910006 92f64010-3fcb-417f-a3a1-88f5064fb3ae_mirnaseq_gdc_realn.bam 185484390 BAM harmonized CPTAC3 bdb8c40c-d9b9-4bed-a4e0-51675bb22985 05b38fa36186922e8e85710b4e5c4a16 { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02602.RNA-Seq.chimeric.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 dbbbf56b-112f-4915-8c8f-3cecf0649e55.rna_seq.chimeric.gdc_realn.bam 63357141 BAM chimeric harmonized CPTAC3 24b128b3-da30-428f-91a3-24ed20c52782 ea655ac488a6fba4a4ae3fd896a61f2a { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02602.RNA-Seq.chimeric.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 1af858a6-f57e-4d1c-9288-868762bcb7bd.rna_seq.chimeric.gdc_realn.bam 31516567 BAM chimeric harmonized CPTAC3 2c4ab254-e7d7-40f9-a87e-e9ccdf88aa28 be62004aff95f6c78cfe79aed390427b { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02602.RNA-Seq.genomic.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 dbbbf56b-112f-4915-8c8f-3cecf0649e55.rna_seq.genomic.gdc_realn.bam 7957483664 BAM genomic harmonized CPTAC3 4702d232-d9e7-4686-aad4-c6f91b70a99f 13e5858a38e44b597dac7d04f1f70d61 { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02602.RNA-Seq.genomic.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 1af858a6-f57e-4d1c-9288-868762bcb7bd.rna_seq.genomic.gdc_realn.bam 10776752643 BAM genomic harmonized CPTAC3 21e50ca2-d70d-48e0-a8ce-00b2516cf5bf e4e3f8d35b10b4a51309cfab39b0afda { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02602.RNA-Seq.R1_L003.T C3L-02602 UCEC RNA-Seq tumor CPT0113910006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 4665028403 FASTQ R1_L003 unaligned CPTAC3 90d6f0a0-a3f7-497d-a876-77a58f6dea3e cc3fe43424e3d5c1c8dc946ab4151766 { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02602.RNA-Seq.R1_L007.A C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 190125_UNC31-K00269_0184_AH3M32BBXY_GGCTAC_S20_L007_R1_001.fastq.gz 3788349906 FASTQ R1_L007 unaligned CPTAC3 035da6f8-64e8-4bf8-9187-3830ed902225 aef1974004a771c7679a3f24a42b79ea { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02602.RNA-Seq.R1_.T C3L-02602 UCEC RNA-Seq tumor CPT0350250001 20210723_P2_C1_WB7988-plate2_S25_R1_001.fastq.gz 7178642367 FASTQ R1_ unaligned CPTAC3 0173247e-5107-4bd1-a417-6bbdb214b1d0 5a737d097fe57194e27f615c152e6bb5 { 'aliquot_tag': 'ALQ_9b857381', 'gdc_sample_type': 'Primary Tumor' } -C3L-02602.RNA-Seq.R2_L003.T C3L-02602 UCEC RNA-Seq tumor CPT0113910006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 5058612340 FASTQ R2_L003 unaligned CPTAC3 112bfd35-f6a1-425d-96c4-b123f852ae4b a5a0645ee8c81c444866d7816d8a6f05 { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02602.RNA-Seq.R2_L007.A C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 190125_UNC31-K00269_0184_AH3M32BBXY_GGCTAC_S20_L007_R2_001.fastq.gz 4223841174 FASTQ R2_L007 unaligned CPTAC3 f8148ef7-a85c-4263-9ba0-7af1b18eac26 4f0dc3528d84fb38a72dc79ededd08eb { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02602.RNA-Seq.R2_.T C3L-02602 UCEC RNA-Seq tumor CPT0350250001 20210723_P2_C1_WB7988-plate2_S25_R2_001.fastq.gz 7436271333 FASTQ R2_ unaligned CPTAC3 d0fafdd0-190b-40cb-b63c-003d0c7b4e5e 79f766fa740dca9f93ec09884242b59d { 'aliquot_tag': 'ALQ_9b857381', 'gdc_sample_type': 'Primary Tumor' } -C3L-02602.RNA-Seq.transcriptome.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 dbbbf56b-112f-4915-8c8f-3cecf0649e55.rna_seq.transcriptome.gdc_realn.bam 8681191227 BAM transcriptome harmonized CPTAC3 6e03dcb4-2aea-496a-8ed8-ec0ae2b2edbe dff550d1e64f98ced83509ac2d832310 { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02602.RNA-Seq.transcriptome.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 1af858a6-f57e-4d1c-9288-868762bcb7bd.rna_seq.transcriptome.gdc_realn.bam 11315204141 BAM transcriptome harmonized CPTAC3 3fe2953c-5d83-40c9-b541-6fe651e71aeb abe8480cfad4ca5b10e4903c518fb6dc { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02602.RNA-Seq.chimeric.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 af699aef-1405-401a-a679-8ec85b4384a1.rna_seq.chimeric.gdc_realn.bam 63316121 BAM chimeric harmonized CPTAC3 77183051-cca0-4b96-b7ba-604656bea46c 797e04911572e8a020e4dfecf57dc51f { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02602.RNA-Seq.chimeric.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 ca9760b9-27aa-435f-bd6f-2d474fb9e8ac.rna_seq.chimeric.gdc_realn.bam 31533137 BAM chimeric harmonized CPTAC3 e596b6be-1637-4db0-b318-f26aa07a9284 5b7f0215293ba1e141deb0c4e1c39be0 { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02602.RNA-Seq.chimeric.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0350250001 c1103532-32fe-44dd-aa67-2d2d0c48a283.rna_seq.chimeric.gdc_realn.bam 195994368 BAM chimeric harmonized CPTAC3 e1119f60-b0be-4549-b58b-54d685aa79cf ed9dce606bbfccff89018b4c0732ee29 { 'aliquot_tag': 'ALQ_9b857381', 'gdc_sample_type': 'Primary Tumor' } +C3L-02602.RNA-Seq.genomic.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 af699aef-1405-401a-a679-8ec85b4384a1.rna_seq.genomic.gdc_realn.bam 7958810366 BAM genomic harmonized CPTAC3 be3dfd26-5298-487e-b213-ca0507db14ab 54fe0d9a0d4a27f7f0d10c56df419b8a { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02602.RNA-Seq.genomic.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 ca9760b9-27aa-435f-bd6f-2d474fb9e8ac.rna_seq.genomic.gdc_realn.bam 10778193780 BAM genomic harmonized CPTAC3 df1f0573-b50d-4b50-b986-58ad93c35b16 0f66efe1eefcd118cd21ee3bf6831370 { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02602.RNA-Seq.genomic.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0350250001 c1103532-32fe-44dd-aa67-2d2d0c48a283.rna_seq.genomic.gdc_realn.bam 11849086273 BAM genomic harmonized CPTAC3 6d8a7a7f-a66b-40cd-9595-2f041896fd12 d6fa67394ab78baca6bed8322c295941 { 'aliquot_tag': 'ALQ_9b857381', 'gdc_sample_type': 'Primary Tumor' } +C3L-02602.RNA-Seq.R1_L003.T C3L-02602 UCEC RNA-Seq tumor CPT0113910006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 4665028403 FASTQ R1_L003 unaligned CPTAC3 90d6f0a0-a3f7-497d-a876-77a58f6dea3e cc3fe43424e3d5c1c8dc946ab4151766 { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02602.RNA-Seq.R1_L007.A C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 190125_UNC31-K00269_0184_AH3M32BBXY_GGCTAC_S20_L007_R1_001.fastq.gz 3788349906 FASTQ R1_L007 unaligned CPTAC3 035da6f8-64e8-4bf8-9187-3830ed902225 aef1974004a771c7679a3f24a42b79ea { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-02602.RNA-Seq.R2_L003.T C3L-02602 UCEC RNA-Seq tumor CPT0113910006 181207_UNC32-K00270_0137_BH2LYCBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 5058612340 FASTQ R2_L003 unaligned CPTAC3 112bfd35-f6a1-425d-96c4-b123f852ae4b a5a0645ee8c81c444866d7816d8a6f05 { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02602.RNA-Seq.R2_L007.A C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 190125_UNC31-K00269_0184_AH3M32BBXY_GGCTAC_S20_L007_R2_001.fastq.gz 4223841174 FASTQ R2_L007 unaligned CPTAC3 f8148ef7-a85c-4263-9ba0-7af1b18eac26 4f0dc3528d84fb38a72dc79ededd08eb { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-02602.RNA-Seq.T C3L-02602 UCEC RNA-Seq tumor CPT0350250001 20210723_P2_C1_WB7988-plate2_S25_R1_001.fastq.gz 7178642367 FASTQ unaligned CPTAC3 0173247e-5107-4bd1-a417-6bbdb214b1d0 5a737d097fe57194e27f615c152e6bb5 +C3L-02602.RNA-Seq.T C3L-02602 UCEC RNA-Seq tumor CPT0350250001 20210723_P2_C1_WB7988-plate2_S25_R2_001.fastq.gz 7436271333 FASTQ unaligned CPTAC3 d0fafdd0-190b-40cb-b63c-003d0c7b4e5e 79f766fa740dca9f93ec09884242b59d +C3L-02602.RNA-Seq.transcriptome.A.hg38 C3L-02602 UCEC RNA-Seq tissue_normal CPT0113930009 af699aef-1405-401a-a679-8ec85b4384a1.rna_seq.transcriptome.gdc_realn.bam 10025389286 BAM transcriptome harmonized CPTAC3 d34d389b-7d5c-4125-a974-f1b512bd9005 b64cb6084850adc63adbdeb510722f52 { 'aliquot_tag': 'ALQ_eb8dc231', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02602.RNA-Seq.transcriptome.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0113910006 ca9760b9-27aa-435f-bd6f-2d474fb9e8ac.rna_seq.transcriptome.gdc_realn.bam 12815666421 BAM transcriptome harmonized CPTAC3 3d71438b-4972-495c-a81c-34b6327bc972 4aa78da2e79d5c7bcacf76a383e81b36 { 'aliquot_tag': 'ALQ_1f28cc0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02602.RNA-Seq.transcriptome.T.hg38 C3L-02602 UCEC RNA-Seq tumor CPT0350250001 c1103532-32fe-44dd-aa67-2d2d0c48a283.rna_seq.transcriptome.gdc_realn.bam 6690847312 BAM transcriptome harmonized CPTAC3 c96fb90f-7b64-42b5-ad50-573ae8c017c6 5ecbba0091e1e12c0cd2531428b37f20 { 'aliquot_tag': 'ALQ_9b857381', 'gdc_sample_type': 'Primary Tumor' } C3L-02602.WGS.A C3L-02602 UCEC WGS tissue_normal CPT0113930006 CPT0113930006.WholeGenome.RP-1303.bam 58475680309 BAM aligned CPTAC3 05c80092-9097-4a6a-9e2f-d20578932873 73c8253c00240a5aa96ec7652eaeff6d { 'aliquot_tag': 'ALQ_7b32dfa0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02602.WGS.A.hg38 C3L-02602 UCEC WGS tissue_normal CPT0113930006 37643280-6285-466c-a679-13b543909986_wgs_gdc_realn.bam 84684115546 BAM harmonized CPTAC3 8f652206-3d1c-4837-baa8-03be64a04fe7 ef6dbf2b906b688db3bdd8d382298e85 { 'aliquot_tag': 'ALQ_7b32dfa0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02602.WGS.N C3L-02602 UCEC WGS blood_normal CPT0115300002 CPT0115300002.WholeGenome.RP-1303.bam 56569720415 BAM aligned CPTAC3 e1a00435-d255-490f-818b-686f133ce062 d66fc5f3bd989ef97377d7f478b983c9 { 'aliquot_tag': 'ALQ_f9b47735', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11094,8 +11871,8 @@ C3L-02604.miRNA-Seq.T C3L-02604 PDA miRNA-Seq tumor CPT0161770010 190712_UNC32-K C3L-02604.miRNA-Seq.T.hg38 C3L-02604 PDA miRNA-Seq tumor CPT0161770010 a0be44dd-7f14-43bc-ba05-806b82bece49_mirnaseq_gdc_realn.bam 261460697 BAM harmonized CPTAC3 bdb0fe01-f85d-4058-ab12-f9887b03cd07 dce1185e47fd58d383f39ec24b3a63f3 { 'aliquot_tag': 'ALQ_d99a9454', 'gdc_sample_type': 'Primary Tumor' } C3L-02604.RNA-Seq.chimeric.T.hg38 C3L-02604 PDA RNA-Seq tumor CPT0161770010 eb86db8f-1b68-4c90-9af2-f2eb7152d32f.rna_seq.chimeric.gdc_realn.bam 43207533 BAM chimeric harmonized CPTAC3 7c14f489-2ba8-4f0e-8c0a-814037e22fe4 59c72a8aa0fe4de91730cdabed0beaec { 'aliquot_tag': 'ALQ_d99a9454', 'gdc_sample_type': 'Primary Tumor' } C3L-02604.RNA-Seq.genomic.T.hg38 C3L-02604 PDA RNA-Seq tumor CPT0161770010 eb86db8f-1b68-4c90-9af2-f2eb7152d32f.rna_seq.genomic.gdc_realn.bam 11647966799 BAM genomic harmonized CPTAC3 e6bc2450-bf04-4546-9420-3c92bde38d36 75c96b74ade79c4d58f18875bd23a4d9 { 'aliquot_tag': 'ALQ_d99a9454', 'gdc_sample_type': 'Primary Tumor' } -C3L-02604.RNA-Seq.R1_L004.T C3L-02604 PDA RNA-Seq tumor CPT0161770010 190614_UNC32-K00270_0182_BH7777BBXY_CTACGACA-GAGTCCAA_S13_L004_R1_001.fastq.gz 4590116935 FASTQ R1_L004 unaligned CPTAC3 204bc201-be60-4cb9-bcee-debfff70a7c1 f9ce7c0e5d4ffd505e29d2907a97c932 { 'aliquot_tag': 'ALQ_d99a9454', 'gdc_sample_type': 'Primary Tumor' } -C3L-02604.RNA-Seq.R2_L004.T C3L-02604 PDA RNA-Seq tumor CPT0161770010 190614_UNC32-K00270_0182_BH7777BBXY_CTACGACA-GAGTCCAA_S13_L004_R2_001.fastq.gz 5190498664 FASTQ R2_L004 unaligned CPTAC3 58337ccb-2919-4c42-9772-a0d4e90eeb49 3a7a5e6bf7ad9af2a2bdc1ffa1d8d4aa { 'aliquot_tag': 'ALQ_d99a9454', 'gdc_sample_type': 'Primary Tumor' } +C3L-02604.RNA-Seq.R1_L004.T C3L-02604 PDA RNA-Seq tumor CPT0161770010 190614_UNC32-K00270_0182_BH7777BBXY_CTACGACA-GAGTCCAA_S13_L004_R1_001.fastq.gz 4590116935 FASTQ R1_L004 unaligned CPTAC3 204bc201-be60-4cb9-bcee-debfff70a7c1 f9ce7c0e5d4ffd505e29d2907a97c932 { 'aliquot_tag': 'ALQ_d99a9454', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02604.RNA-Seq.R2_L004.T C3L-02604 PDA RNA-Seq tumor CPT0161770010 190614_UNC32-K00270_0182_BH7777BBXY_CTACGACA-GAGTCCAA_S13_L004_R2_001.fastq.gz 5190498664 FASTQ R2_L004 unaligned CPTAC3 58337ccb-2919-4c42-9772-a0d4e90eeb49 3a7a5e6bf7ad9af2a2bdc1ffa1d8d4aa { 'aliquot_tag': 'ALQ_d99a9454', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-02604.RNA-Seq.transcriptome.T.hg38 C3L-02604 PDA RNA-Seq tumor CPT0161770010 eb86db8f-1b68-4c90-9af2-f2eb7152d32f.rna_seq.transcriptome.gdc_realn.bam 12186736495 BAM transcriptome harmonized CPTAC3 6b85707f-457e-4a91-8a03-b6f04f6f0b1c 2283af23db0ae6fa9bb3f57085953fcb { 'aliquot_tag': 'ALQ_d99a9454', 'gdc_sample_type': 'Primary Tumor' } C3L-02604.Targeted.T C3L-02604 PDA Targeted Sequencing tumor CPT0161770007 CPT0161770007.CustomSelection.RP-1303.PDO-18786.bam 5140603040 BAM aligned CPTAC3 1adeb86d-61f5-4ee0-be21-0ea6ba238fc8 ce7a1ff3ccb580a3cdf7905dfcd34fcf { 'aliquot_tag': 'ALQ_5ee530b6', 'gdc_sample_type': 'Primary Tumor' } C3L-02604.Targeted.T.hg38 C3L-02604 PDA Targeted Sequencing tumor CPT0161770007 1271bc97-9a0a-4153-90cb-a4eb8490761f_targetedsequencing_gdc_realn.bam 7115684385 BAM harmonized CPTAC3 9729ed42-7ea7-46c2-8194-e15fd9732283 8c3e4835526d2939c5e0bfbc3b194546 { 'aliquot_tag': 'ALQ_5ee530b6', 'gdc_sample_type': 'Primary Tumor' } @@ -11117,12 +11894,12 @@ C3L-02606.miRNA-Seq.T C3L-02606 PDA miRNA-Seq tumor CPT0124500010 181108_UNC31-K C3L-02606.miRNA-Seq.T.hg38 C3L-02606 PDA miRNA-Seq tumor CPT0124500010 c9c6b80f-1112-4e47-9865-d0745d771ef5_mirnaseq_gdc_realn.bam 342715829 BAM harmonized CPTAC3 31d01e5a-fd6f-4b93-9ac2-ecc3ea954853 8eecd833e77b10b95c9a1e23b71b41d2 { 'aliquot_tag': 'ALQ_f000c812', 'gdc_sample_type': 'Primary Tumor' } C3L-02606.RNA-Seq.chimeric.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 c82e7794-6b1d-4957-85c9-4ade1856a41f.rna_seq.chimeric.gdc_realn.bam 42838463 BAM chimeric harmonized CPTAC3 ec4e2f09-d09f-4203-86cc-bab3cdaac9b6 a8f6bd7304ea51056fdce3c980be2fae { 'aliquot_tag': 'ALQ_d7673b27', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02606.RNA-Seq.chimeric.T.hg38 C3L-02606 PDA RNA-Seq tumor CPT0124500010 f6bc8bae-d9ce-4bca-9517-fa6a6535f661.rna_seq.chimeric.gdc_realn.bam 158877207 BAM chimeric harmonized CPTAC3 57873112-63a2-40d8-b35c-4e8d70b304cb 5ac8ec48444c880302f53a31400656a3 { 'aliquot_tag': 'ALQ_f000c812', 'gdc_sample_type': 'Primary Tumor' } -C3L-02606.RNA-Seq.genomic.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 c82e7794-6b1d-4957-85c9-4ade1856a41f.rna_seq.genomic.gdc_realn.bam 10958566926 BAM genomic harmonized CPTAC3 e7cd1033-628c-40a6-a3da-778fde31fde7 6155857e45489ee07afee3e5bcc67526 { 'aliquot_tag': 'ALQ_d7673b27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02606.RNA-Seq.genomic.T.hg38 C3L-02606 PDA RNA-Seq tumor CPT0124500010 f6bc8bae-d9ce-4bca-9517-fa6a6535f661.rna_seq.genomic.gdc_realn.bam 7776690651 BAM genomic harmonized CPTAC3 4f81c5c3-9dd7-41e7-9c63-26c7f1ea44e9 2d7ba1e223419f0f45922f4c21e16a80 { 'aliquot_tag': 'ALQ_f000c812', 'gdc_sample_type': 'Primary Tumor' } -C3L-02606.RNA-Seq.R1_L002.T C3L-02606 PDA RNA-Seq tumor CPT0124500010 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L002_R1_001.fastq.gz 3523165616 FASTQ R1_L002 unaligned CPTAC3 5c886d75-3eda-4164-bbde-589182b17c58 774dfed5065c21db6a2026a5a47afa4e { 'aliquot_tag': 'ALQ_f000c812', 'gdc_sample_type': 'Primary Tumor' } -C3L-02606.RNA-Seq.R1_L004.A C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTCCGC_S15_L004_R1_001.fastq.gz 4128817461 FASTQ R1_L004 unaligned CPTAC3 a23673c8-562a-421e-b235-47642a82c5f2 d6fc070ba06d64f22aca93cbce6c37fc { 'aliquot_tag': 'ALQ_d7673b27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02606.RNA-Seq.R2_L002.T C3L-02606 PDA RNA-Seq tumor CPT0124500010 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L002_R2_001.fastq.gz 3811079079 FASTQ R2_L002 unaligned CPTAC3 090a41ea-c68c-4947-891f-2dcc24b73a29 cb429705c1a31614f096130084e3ab12 { 'aliquot_tag': 'ALQ_f000c812', 'gdc_sample_type': 'Primary Tumor' } -C3L-02606.RNA-Seq.R2_L004.A C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTCCGC_S15_L004_R2_001.fastq.gz 4686627777 FASTQ R2_L004 unaligned CPTAC3 8f6a4f28-bf7e-4b44-8627-170a453a7c29 26a5d4e5a1cf29ea62a1eed74f8e96d7 { 'aliquot_tag': 'ALQ_d7673b27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02606.RNA-Seq.genomic.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 c82e7794-6b1d-4957-85c9-4ade1856a41f.rna_seq.genomic.gdc_realn.bam 10958566926 BAM genomic harmonized CPTAC3 8c26b9d8-b65a-48fb-a1a5-202964e62410 6155857e45489ee07afee3e5bcc67526 { 'aliquot_tag': 'ALQ_d7673b27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02606.RNA-Seq.genomic.T.hg38 C3L-02606 PDA RNA-Seq tumor CPT0124500010 f6bc8bae-d9ce-4bca-9517-fa6a6535f661.rna_seq.genomic.gdc_realn.bam 7776690651 BAM genomic harmonized CPTAC3 268e0553-5c82-485c-9da7-fafebb1ba4cf 2d7ba1e223419f0f45922f4c21e16a80 { 'aliquot_tag': 'ALQ_f000c812', 'gdc_sample_type': 'Primary Tumor' } +C3L-02606.RNA-Seq.R1_L002.T C3L-02606 PDA RNA-Seq tumor CPT0124500010 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L002_R1_001.fastq.gz 3523165616 FASTQ R1_L002 unaligned CPTAC3 5c886d75-3eda-4164-bbde-589182b17c58 774dfed5065c21db6a2026a5a47afa4e { 'aliquot_tag': 'ALQ_f000c812', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02606.RNA-Seq.R1_L004.A C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTCCGC_S15_L004_R1_001.fastq.gz 4128817461 FASTQ R1_L004 unaligned CPTAC3 a23673c8-562a-421e-b235-47642a82c5f2 d6fc070ba06d64f22aca93cbce6c37fc { 'aliquot_tag': 'ALQ_d7673b27', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02606.RNA-Seq.R2_L002.T C3L-02606 PDA RNA-Seq tumor CPT0124500010 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L002_R2_001.fastq.gz 3811079079 FASTQ R2_L002 unaligned CPTAC3 090a41ea-c68c-4947-891f-2dcc24b73a29 cb429705c1a31614f096130084e3ab12 { 'aliquot_tag': 'ALQ_f000c812', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-02606.RNA-Seq.R2_L004.A C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTCCGC_S15_L004_R2_001.fastq.gz 4686627777 FASTQ R2_L004 unaligned CPTAC3 8f6a4f28-bf7e-4b44-8627-170a453a7c29 26a5d4e5a1cf29ea62a1eed74f8e96d7 { 'aliquot_tag': 'ALQ_d7673b27', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-02606.RNA-Seq.transcriptome.A.hg38 C3L-02606 PDA RNA-Seq tissue_normal CPT0124530009 c82e7794-6b1d-4957-85c9-4ade1856a41f.rna_seq.transcriptome.gdc_realn.bam 11070014819 BAM transcriptome harmonized CPTAC3 355ef197-ad6b-43b5-b8e9-0cf3aacb6256 d77816a1a3c50a19688f627e23836cf8 { 'aliquot_tag': 'ALQ_d7673b27', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02606.RNA-Seq.transcriptome.T.hg38 C3L-02606 PDA RNA-Seq tumor CPT0124500010 f6bc8bae-d9ce-4bca-9517-fa6a6535f661.rna_seq.transcriptome.gdc_realn.bam 9439698772 BAM transcriptome harmonized CPTAC3 88af3d80-b14e-42db-963a-02cf59c08598 1f97c183248e3266b557b2ffed51fdaf { 'aliquot_tag': 'ALQ_f000c812', 'gdc_sample_type': 'Primary Tumor' } C3L-02606.WGS.A C3L-02606 PDA WGS tissue_normal CPT0124530006 CPT0124530006.WholeGenome.RP-1303.bam 63974015393 BAM aligned CPTAC3 f0c4d75f-9f22-4739-8b5d-100deb5bc275 e0df584ff959f71a270bdbc550d25c26 { 'aliquot_tag': 'ALQ_47d826b6', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11149,12 +11926,12 @@ C3L-02610.miRNA-Seq.T C3L-02610 PDA miRNA-Seq tumor CPT0124980010 181108_UNC31-K C3L-02610.miRNA-Seq.T.hg38 C3L-02610 PDA miRNA-Seq tumor CPT0124980010 77484bbd-aa98-4334-a708-c65f0033c11d_mirnaseq_gdc_realn.bam 292226022 BAM harmonized CPTAC3 385c13cf-963b-4c2d-a662-0f3e9ca243ca 6e067b89d6615df8707cbd88f44e911b { 'aliquot_tag': 'ALQ_b7b243a8', 'gdc_sample_type': 'Primary Tumor' } C3L-02610.RNA-Seq.chimeric.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 74d972ea-d6d1-4c53-aa23-02e54031af53.rna_seq.chimeric.gdc_realn.bam 61416456 BAM chimeric harmonized CPTAC3 369e64b6-dc4a-4ab6-b85a-f9a2b0749d3a 240b480e08ae87d1bbcf11e431e45e54 { 'aliquot_tag': 'ALQ_5b1df240', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02610.RNA-Seq.chimeric.T.hg38 C3L-02610 PDA RNA-Seq tumor CPT0124980010 0f9c49f7-cd87-483c-bf5f-fb508d363b64.rna_seq.chimeric.gdc_realn.bam 107268717 BAM chimeric harmonized CPTAC3 6bbb725b-a652-4301-b3e7-8d30d4fc0c3e da5657381dc527270b317b2623b59520 { 'aliquot_tag': 'ALQ_b7b243a8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02610.RNA-Seq.genomic.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 74d972ea-d6d1-4c53-aa23-02e54031af53.rna_seq.genomic.gdc_realn.bam 10959148907 BAM genomic harmonized CPTAC3 97e9f3cd-4488-4119-bc3d-4d0e5d8aedb8 cb9c1e77c5c3f0c52e7acd68fe79a6a5 { 'aliquot_tag': 'ALQ_5b1df240', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02610.RNA-Seq.genomic.T.hg38 C3L-02610 PDA RNA-Seq tumor CPT0124980010 0f9c49f7-cd87-483c-bf5f-fb508d363b64.rna_seq.genomic.gdc_realn.bam 7449704292 BAM genomic harmonized CPTAC3 8f82de6f-49b3-408a-9cb1-2c9e86681065 2d3a42226dbbd61c54549f5c7e1db5d8 { 'aliquot_tag': 'ALQ_b7b243a8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02610.RNA-Seq.R1_L001.T C3L-02610 PDA RNA-Seq tumor CPT0124980010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L001_R1_001.fastq.gz 3419241932 FASTQ R1_L001 unaligned CPTAC3 fd11aa88-b072-423d-8983-f59a2275eeae dcb4aaa93ff28eb7bdf8af20afeaad91 { 'aliquot_tag': 'ALQ_b7b243a8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02610.RNA-Seq.R1_L004.A C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGGCC_S14_L004_R1_001.fastq.gz 3958657777 FASTQ R1_L004 unaligned CPTAC3 d888a4c7-71dc-4b3c-80d4-53e83ec6374a 4ef3533f16cd22c7c256dcbfa7447e20 { 'aliquot_tag': 'ALQ_5b1df240', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02610.RNA-Seq.R2_L001.T C3L-02610 PDA RNA-Seq tumor CPT0124980010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L001_R2_001.fastq.gz 3676479320 FASTQ R2_L001 unaligned CPTAC3 c9d906a9-491e-4e3b-90a6-d3c466b8cc1e 3c27cb8cb6f0f0a7ebf5f73f33c664fa { 'aliquot_tag': 'ALQ_b7b243a8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02610.RNA-Seq.R2_L004.A C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGGCC_S14_L004_R2_001.fastq.gz 4420071584 FASTQ R2_L004 unaligned CPTAC3 937e7f27-44e7-4288-9723-95c10f841789 62fba495822bc94743c72637056e4321 { 'aliquot_tag': 'ALQ_5b1df240', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02610.RNA-Seq.genomic.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 74d972ea-d6d1-4c53-aa23-02e54031af53.rna_seq.genomic.gdc_realn.bam 10959148907 BAM genomic harmonized CPTAC3 d2be85f4-03a2-42c9-95a7-afcd229d9ddf cb9c1e77c5c3f0c52e7acd68fe79a6a5 { 'aliquot_tag': 'ALQ_5b1df240', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02610.RNA-Seq.genomic.T.hg38 C3L-02610 PDA RNA-Seq tumor CPT0124980010 0f9c49f7-cd87-483c-bf5f-fb508d363b64.rna_seq.genomic.gdc_realn.bam 7449704292 BAM genomic harmonized CPTAC3 5ad49cd2-dc95-4e46-8c32-50ff7ec2d61e 2d3a42226dbbd61c54549f5c7e1db5d8 { 'aliquot_tag': 'ALQ_b7b243a8', 'gdc_sample_type': 'Primary Tumor' } +C3L-02610.RNA-Seq.R1_L001.T C3L-02610 PDA RNA-Seq tumor CPT0124980010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L001_R1_001.fastq.gz 3419241932 FASTQ R1_L001 unaligned CPTAC3 fd11aa88-b072-423d-8983-f59a2275eeae dcb4aaa93ff28eb7bdf8af20afeaad91 { 'aliquot_tag': 'ALQ_b7b243a8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02610.RNA-Seq.R1_L004.A C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGGCC_S14_L004_R1_001.fastq.gz 3958657777 FASTQ R1_L004 unaligned CPTAC3 d888a4c7-71dc-4b3c-80d4-53e83ec6374a 4ef3533f16cd22c7c256dcbfa7447e20 { 'aliquot_tag': 'ALQ_5b1df240', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02610.RNA-Seq.R2_L001.T C3L-02610 PDA RNA-Seq tumor CPT0124980010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L001_R2_001.fastq.gz 3676479320 FASTQ R2_L001 unaligned CPTAC3 c9d906a9-491e-4e3b-90a6-d3c466b8cc1e 3c27cb8cb6f0f0a7ebf5f73f33c664fa { 'aliquot_tag': 'ALQ_b7b243a8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02610.RNA-Seq.R2_L004.A C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGGCC_S14_L004_R2_001.fastq.gz 4420071584 FASTQ R2_L004 unaligned CPTAC3 937e7f27-44e7-4288-9723-95c10f841789 62fba495822bc94743c72637056e4321 { 'aliquot_tag': 'ALQ_5b1df240', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-02610.RNA-Seq.transcriptome.A.hg38 C3L-02610 PDA RNA-Seq tissue_normal CPT0125010009 74d972ea-d6d1-4c53-aa23-02e54031af53.rna_seq.transcriptome.gdc_realn.bam 10834598909 BAM transcriptome harmonized CPTAC3 57d38093-d775-473f-9682-4bd07b96b2e3 65f242299a41353d0ff31e514ab30bbd { 'aliquot_tag': 'ALQ_5b1df240', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02610.RNA-Seq.transcriptome.T.hg38 C3L-02610 PDA RNA-Seq tumor CPT0124980010 0f9c49f7-cd87-483c-bf5f-fb508d363b64.rna_seq.transcriptome.gdc_realn.bam 9900369175 BAM transcriptome harmonized CPTAC3 086d1152-f9f2-498e-956d-cf11dd793153 42845f3646bb777a8f016ac721fc5ac5 { 'aliquot_tag': 'ALQ_b7b243a8', 'gdc_sample_type': 'Primary Tumor' } C3L-02610.WGS.A C3L-02610 PDA WGS tissue_normal CPT0125010006 CPT0125010006.WholeGenome.RP-1303.bam 67222301816 BAM aligned CPTAC3 b45a506a-24e3-4794-8e00-a2ae50e073e3 fc37f03d74caa2d5720b31c026566ad0 { 'aliquot_tag': 'ALQ_cba2efd1', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11181,12 +11958,12 @@ C3L-02613.miRNA-Seq.T C3L-02613 PDA miRNA-Seq tumor CPT0124610010 181108_UNC31-K C3L-02613.miRNA-Seq.T.hg38 C3L-02613 PDA miRNA-Seq tumor CPT0124610010 f436c597-6ce0-4729-9d79-6acec46961ea_mirnaseq_gdc_realn.bam 229044470 BAM harmonized CPTAC3 e672995e-8358-406d-abfc-ad4fa3a94430 dd364399ecd3dd018644d163efc3417f { 'aliquot_tag': 'ALQ_4bf4930c', 'gdc_sample_type': 'Primary Tumor' } C3L-02613.RNA-Seq.chimeric.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 ef40d986-40dd-4116-bf7d-020ebb4d70fe.rna_seq.chimeric.gdc_realn.bam 107323475 BAM chimeric harmonized CPTAC3 e42e57ec-a4ac-4570-9f9f-d166f170fac9 b5a9489a988f16a817418b81f95d0704 { 'aliquot_tag': 'ALQ_51f34989', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02613.RNA-Seq.chimeric.T.hg38 C3L-02613 PDA RNA-Seq tumor CPT0124610010 85dda493-594c-45a4-a258-b28a535dcae5.rna_seq.chimeric.gdc_realn.bam 111675215 BAM chimeric harmonized CPTAC3 eec3cb09-e57d-430e-b7df-9fcdace0cfaa 891029c4e6e2e6b9b79fc6659734da60 { 'aliquot_tag': 'ALQ_4bf4930c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02613.RNA-Seq.genomic.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 ef40d986-40dd-4116-bf7d-020ebb4d70fe.rna_seq.genomic.gdc_realn.bam 7296145201 BAM genomic harmonized CPTAC3 974fa3ca-6dd2-4b17-aa92-5a39cba64220 f9a57cdbd936d2f3aa5969eaf6b39eb6 { 'aliquot_tag': 'ALQ_51f34989', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02613.RNA-Seq.genomic.T.hg38 C3L-02613 PDA RNA-Seq tumor CPT0124610010 85dda493-594c-45a4-a258-b28a535dcae5.rna_seq.genomic.gdc_realn.bam 8129087461 BAM genomic harmonized CPTAC3 5e166e7f-9fae-40f2-91fd-4c49e9add8f5 d57ce5a9f73dad7c0cde20a9604c3119 { 'aliquot_tag': 'ALQ_4bf4930c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02613.RNA-Seq.R1_L002.T C3L-02613 PDA RNA-Seq tumor CPT0124610010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L002_R1_001.fastq.gz 3645297278 FASTQ R1_L002 unaligned CPTAC3 44bba21e-a3f3-4772-bcc9-fab3b5382c16 3b91039a78fa729d1b1304387c6e9c56 { 'aliquot_tag': 'ALQ_4bf4930c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02613.RNA-Seq.R1_L005.A C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGAAA_S20_L005_R1_001.fastq.gz 3209811527 FASTQ R1_L005 unaligned CPTAC3 bb6960c6-9c3e-4b5f-97c3-e7da6872ca28 0cdcfe5956621e9aeecc674388e9d6d3 { 'aliquot_tag': 'ALQ_51f34989', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02613.RNA-Seq.R2_L002.T C3L-02613 PDA RNA-Seq tumor CPT0124610010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L002_R2_001.fastq.gz 3949826814 FASTQ R2_L002 unaligned CPTAC3 a744f47c-65a7-4686-ad73-10ccea4cb64e 4f2b32fe912e1e95fbd4db77d8747283 { 'aliquot_tag': 'ALQ_4bf4930c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02613.RNA-Seq.R2_L005.A C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGAAA_S20_L005_R2_001.fastq.gz 3360168099 FASTQ R2_L005 unaligned CPTAC3 8a57f7a7-b6a5-4ca1-86b9-090b05360391 05eecacfe16081d21b2de8ec7d3ae853 { 'aliquot_tag': 'ALQ_51f34989', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02613.RNA-Seq.genomic.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 ef40d986-40dd-4116-bf7d-020ebb4d70fe.rna_seq.genomic.gdc_realn.bam 7296145201 BAM genomic harmonized CPTAC3 8d46ee65-07dc-46a4-b2fb-708cd43b13f3 f9a57cdbd936d2f3aa5969eaf6b39eb6 { 'aliquot_tag': 'ALQ_51f34989', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02613.RNA-Seq.genomic.T.hg38 C3L-02613 PDA RNA-Seq tumor CPT0124610010 85dda493-594c-45a4-a258-b28a535dcae5.rna_seq.genomic.gdc_realn.bam 8129087461 BAM genomic harmonized CPTAC3 4559b989-2d4d-4128-8df4-1cd482d3be7f d57ce5a9f73dad7c0cde20a9604c3119 { 'aliquot_tag': 'ALQ_4bf4930c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02613.RNA-Seq.R1_L002.T C3L-02613 PDA RNA-Seq tumor CPT0124610010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L002_R1_001.fastq.gz 3645297278 FASTQ R1_L002 unaligned CPTAC3 44bba21e-a3f3-4772-bcc9-fab3b5382c16 3b91039a78fa729d1b1304387c6e9c56 { 'aliquot_tag': 'ALQ_4bf4930c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02613.RNA-Seq.R1_L005.A C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGAAA_S20_L005_R1_001.fastq.gz 3209811527 FASTQ R1_L005 unaligned CPTAC3 bb6960c6-9c3e-4b5f-97c3-e7da6872ca28 0cdcfe5956621e9aeecc674388e9d6d3 { 'aliquot_tag': 'ALQ_51f34989', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02613.RNA-Seq.R2_L002.T C3L-02613 PDA RNA-Seq tumor CPT0124610010 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L002_R2_001.fastq.gz 3949826814 FASTQ R2_L002 unaligned CPTAC3 a744f47c-65a7-4686-ad73-10ccea4cb64e 4f2b32fe912e1e95fbd4db77d8747283 { 'aliquot_tag': 'ALQ_4bf4930c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-02613.RNA-Seq.R2_L005.A C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTGAAA_S20_L005_R2_001.fastq.gz 3360168099 FASTQ R2_L005 unaligned CPTAC3 8a57f7a7-b6a5-4ca1-86b9-090b05360391 05eecacfe16081d21b2de8ec7d3ae853 { 'aliquot_tag': 'ALQ_51f34989', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-02613.RNA-Seq.transcriptome.A.hg38 C3L-02613 PDA RNA-Seq tissue_normal CPT0124630009 ef40d986-40dd-4116-bf7d-020ebb4d70fe.rna_seq.transcriptome.gdc_realn.bam 7566325578 BAM transcriptome harmonized CPTAC3 5e47f0a6-b397-4194-855d-e1069f415991 9d5cb5d412fcce3bb3bb612c6f30a017 { 'aliquot_tag': 'ALQ_51f34989', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02613.RNA-Seq.transcriptome.T.hg38 C3L-02613 PDA RNA-Seq tumor CPT0124610010 85dda493-594c-45a4-a258-b28a535dcae5.rna_seq.transcriptome.gdc_realn.bam 10526868431 BAM transcriptome harmonized CPTAC3 e1059701-a759-4a0a-b922-e9e726a67e76 cc67e97c59cdf1121718afe3af75ae47 { 'aliquot_tag': 'ALQ_4bf4930c', 'gdc_sample_type': 'Primary Tumor' } C3L-02613.Targeted.T C3L-02613 PDA Targeted Sequencing tumor CPT0124610007_1 CPT0124610007_1.CustomSelection.RP-1303.PDO-18786.bam 4885072832 BAM aligned CPTAC3 b5bb87f9-6ce9-46e8-84b2-8e8938c5d016 19ac60d3bba7e61888ab0480f321104b { 'aliquot_tag': 'ALQ_5564e4b8', 'gdc_sample_type': 'Primary Tumor' } @@ -11213,16 +11990,16 @@ C3L-02616.miRNA-Seq.A C3L-02616 LUAD miRNA-Seq tissue_normal CPT0192250009 19013 C3L-02616.miRNA-Seq.A.hg38 C3L-02616 LUAD miRNA-Seq tissue_normal CPT0192250009 53437b33-121f-44f4-bca0-1b0213f2c3cb_mirnaseq_gdc_realn.bam 248769526 BAM harmonized CPTAC3 bd0ceb50-310a-4275-afa8-d955694568fc 0a6b4daf331c47b6255720ebfef7afd1 { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02616.miRNA-Seq.T C3L-02616 LUAD miRNA-Seq tumor CPT0192240009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L006_R1_001.unaln.bam 264893562 BAM unaligned CPTAC3 ea1da1c2-b67d-45b1-a287-30474cf038d3 389300b15eabcc37151b5c85b223cff5 { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor' } C3L-02616.miRNA-Seq.T.hg38 C3L-02616 LUAD miRNA-Seq tumor CPT0192240009 1393ccbb-a44c-4b45-9947-8eba032c2f94_mirnaseq_gdc_realn.bam 291575209 BAM harmonized CPTAC3 cc713805-3e87-4026-9da6-59e775cd37d0 29cd465b1088bd5441afc794db4394f2 { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor' } -C3L-02616.RNA-Seq.chimeric.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 897dbdc5-f32b-4686-b6ab-969c0e1a16ee.rna_seq.chimeric.gdc_realn.bam 57729229 BAM chimeric harmonized CPTAC3 097accc1-edd2-476a-97a9-c530189a039d 76e288779acae4bf7e78ea1b9c9fd709 { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02616.RNA-Seq.chimeric.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 745e33d1-7090-4c69-99e2-5418b64ceac8.rna_seq.chimeric.gdc_realn.bam 53893435 BAM chimeric harmonized CPTAC3 5f3d2183-1757-4944-9e72-46e4137e0404 be6ec4558453edd74ebb0eae7e4b49ff { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor' } -C3L-02616.RNA-Seq.genomic.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 897dbdc5-f32b-4686-b6ab-969c0e1a16ee.rna_seq.genomic.gdc_realn.bam 10375853040 BAM genomic harmonized CPTAC3 f6108a8a-3406-4089-a312-72dc011b9238 a87ee054cdce2cf8410eac3c5af3e4d4 { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02616.RNA-Seq.genomic.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 745e33d1-7090-4c69-99e2-5418b64ceac8.rna_seq.genomic.gdc_realn.bam 8852867062 BAM genomic harmonized CPTAC3 2dbb5709-155b-4b0b-8e44-e418aa618c53 de20bb7b5456b8c63e1b8783e8700657 { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor' } -C3L-02616.RNA-Seq.R1_L004.A C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 190201_UNC31-K00269_0190_BH3LFKBBXY_GGCTAC_S14_L004_R1_001.fastq.gz 4315349982 FASTQ R1_L004 unaligned CPTAC3 5ff069db-1f4c-4774-81ee-f309d4328132 0bd084a6b98e82114b3abe8dd4d0968f { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02616.RNA-Seq.R1_L007.T C3L-02616 LUAD RNA-Seq tumor CPT0192240009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L007_R1_001.fastq.gz 3893162484 FASTQ R1_L007 unaligned CPTAC3 758d490d-5c7c-4fa6-92db-a0b0bc819c2e 075643cdbb10a991c5cf9df25747d228 { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor' } -C3L-02616.RNA-Seq.R2_L004.A C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 190201_UNC31-K00269_0190_BH3LFKBBXY_GGCTAC_S14_L004_R2_001.fastq.gz 4928543111 FASTQ R2_L004 unaligned CPTAC3 60c4b618-17e4-4a7c-9e22-7c0edf40e5bb 4297e2a84c4864023f4d2c00d65ea7f6 { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02616.RNA-Seq.R2_L007.T C3L-02616 LUAD RNA-Seq tumor CPT0192240009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L007_R2_001.fastq.gz 4309850934 FASTQ R2_L007 unaligned CPTAC3 8b618071-ac4c-4cdc-bf3a-a0b73b51f015 1a1ecf90b6590d963064b80dcc4ec4ff { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor' } -C3L-02616.RNA-Seq.transcriptome.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 897dbdc5-f32b-4686-b6ab-969c0e1a16ee.rna_seq.transcriptome.gdc_realn.bam 9113027146 BAM transcriptome harmonized CPTAC3 14192425-c49c-4ebc-ba11-962ebd8a9d21 4b7a2b7a0f2a3b6d2b4bade7d2f02ecc { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02616.RNA-Seq.transcriptome.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 745e33d1-7090-4c69-99e2-5418b64ceac8.rna_seq.transcriptome.gdc_realn.bam 7841337146 BAM transcriptome harmonized CPTAC3 a4c4931b-4f46-4cc4-bc42-f4c44ab1e3ba 3e91c7c9c03b0b471749a93af1263172 { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor' } +C3L-02616.RNA-Seq.chimeric.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 39857e5b-1bdd-45a6-b63c-41e2c7b1754c.rna_seq.chimeric.gdc_realn.bam 57721606 BAM chimeric harmonized CPTAC3 e9447a83-823b-4043-9270-a5efab294fe5 4d416857b6a09144793f685e3e398daf { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02616.RNA-Seq.chimeric.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 a952da7b-ee2f-4d8a-a27f-716401dd72ba.rna_seq.chimeric.gdc_realn.bam 53889980 BAM chimeric harmonized CPTAC3 5f25fdc9-18b2-44b0-819c-1059fa34a156 fc656bf08ee74457efe45403702ee1bf { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor' } +C3L-02616.RNA-Seq.genomic.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 39857e5b-1bdd-45a6-b63c-41e2c7b1754c.rna_seq.genomic.gdc_realn.bam 10377179169 BAM genomic harmonized CPTAC3 b3305a05-f039-4c42-8bb0-d2b499812079 499b485910354039e0dd367850170af8 { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02616.RNA-Seq.genomic.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 a952da7b-ee2f-4d8a-a27f-716401dd72ba.rna_seq.genomic.gdc_realn.bam 8853614453 BAM genomic harmonized CPTAC3 bbf1a412-ea24-4db4-b5e7-69294bad52e8 220444d2e6df3f132ee24082c0ccec59 { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor' } +C3L-02616.RNA-Seq.R1_L004.A C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 190201_UNC31-K00269_0190_BH3LFKBBXY_GGCTAC_S14_L004_R1_001.fastq.gz 4315349982 FASTQ R1_L004 unaligned CPTAC3 5ff069db-1f4c-4774-81ee-f309d4328132 0bd084a6b98e82114b3abe8dd4d0968f { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02616.RNA-Seq.R1_L007.T C3L-02616 LUAD RNA-Seq tumor CPT0192240009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L007_R1_001.fastq.gz 3893162484 FASTQ R1_L007 unaligned CPTAC3 758d490d-5c7c-4fa6-92db-a0b0bc819c2e 075643cdbb10a991c5cf9df25747d228 { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02616.RNA-Seq.R2_L004.A C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 190201_UNC31-K00269_0190_BH3LFKBBXY_GGCTAC_S14_L004_R2_001.fastq.gz 4928543111 FASTQ R2_L004 unaligned CPTAC3 60c4b618-17e4-4a7c-9e22-7c0edf40e5bb 4297e2a84c4864023f4d2c00d65ea7f6 { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-02616.RNA-Seq.R2_L007.T C3L-02616 LUAD RNA-Seq tumor CPT0192240009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L007_R2_001.fastq.gz 4309850934 FASTQ R2_L007 unaligned CPTAC3 8b618071-ac4c-4cdc-bf3a-a0b73b51f015 1a1ecf90b6590d963064b80dcc4ec4ff { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02616.RNA-Seq.transcriptome.A.hg38 C3L-02616 LUAD RNA-Seq tissue_normal CPT0192250009 39857e5b-1bdd-45a6-b63c-41e2c7b1754c.rna_seq.transcriptome.gdc_realn.bam 10287986112 BAM transcriptome harmonized CPTAC3 2370031e-9743-497a-92a4-960008c90e76 0e0542116caecee50d543e524d6a865a { 'aliquot_tag': 'ALQ_7b98d753', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02616.RNA-Seq.transcriptome.T.hg38 C3L-02616 LUAD RNA-Seq tumor CPT0192240009 a952da7b-ee2f-4d8a-a27f-716401dd72ba.rna_seq.transcriptome.gdc_realn.bam 8810373220 BAM transcriptome harmonized CPTAC3 68754766-3722-4208-9577-21d5b5be128b 85ee03c4184a966b576d82c59f9aa89b { 'aliquot_tag': 'ALQ_46f8fee3', 'gdc_sample_type': 'Primary Tumor' } C3L-02616.WGS.A C3L-02616 LUAD WGS tissue_normal CPT0192250006 CPT0192250006.WholeGenome.RP-1303.bam 60991733141 BAM aligned CPTAC3 12d0356a-84e9-466d-9a5d-5efbd4426a2e 41c3c7519700cfb9b17ad602ec979890 { 'aliquot_tag': 'ALQ_eb27cac2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02616.WGS.A.hg38 C3L-02616 LUAD WGS tissue_normal CPT0192250006 adc4dbaf-8bc8-4ac1-8fb7-08df357230ac_wgs_gdc_realn.bam 88428013936 BAM harmonized CPTAC3 b089301c-670f-45c7-9f97-459dd827a31b e5f35d2045bcb36a456902413befa162 { 'aliquot_tag': 'ALQ_eb27cac2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02616.WGS.N C3L-02616 LUAD WGS blood_normal CPT0192360002 CPT0192360002.WholeGenome.RP-1303.bam 54591548332 BAM aligned CPTAC3 7a57e165-b37d-4860-a36e-e44b0e967c4e 77168024548300379f5f32826837c705 { 'aliquot_tag': 'ALQ_60b6a7ae', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11243,8 +12020,8 @@ C3L-02617.REP_a7d2e4ca.miRNA-Seq.T C3L-02617 HNSCC miRNA-Seq tumor CPT0229190013 C3L-02617.REP_a7d2e4ca.miRNA-Seq.T.hg38 C3L-02617 HNSCC miRNA-Seq tumor CPT0229190013 6f91627e-ca9e-47f5-a369-f58dd2dee548_mirnaseq_gdc_realn.bam 222873051 BAM harmonized CPTAC3 7a3000b0-259f-4c26-aa89-2a6e0b961b7f 3ea9f25736f12763fe3585ef08a9133e { 'aliquot_tag': 'REP_a7d2e4ca', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3L-02617.REP_a7d2e4ca.RNA-Seq.chimeric.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 370e4ce8-eaa0-4342-ae3e-9aad8c294c7a.rna_seq.chimeric.gdc_realn.bam 38800147 BAM chimeric harmonized CPTAC3 154616d0-8bc6-4da5-9fd7-03e5b58ab6f1 71a565ac08ee30d8de50a41269d2c800 { 'aliquot_tag': 'REP_a7d2e4ca', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3L-02617.REP_a7d2e4ca.RNA-Seq.genomic.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 370e4ce8-eaa0-4342-ae3e-9aad8c294c7a.rna_seq.genomic.gdc_realn.bam 8359230444 BAM genomic harmonized CPTAC3 5bd926c6-b590-44ba-9c88-f087eabff7da fcd045f02df7a36bd5862a1dbfe43043 { 'aliquot_tag': 'REP_a7d2e4ca', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3L-02617.REP_a7d2e4ca.RNA-Seq.R1_L005.T C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 190702_UNC32-K00270_0188_BH7CLJBBXY_CCGTGAAG-CAGTGGAT_S18_L005_R1_001.fastq.gz 3718849103 FASTQ R1_L005 unaligned CPTAC3 512e18e5-4302-4930-b8c2-71a44520f21a 85faf4c07b1bc96a5f0a43edbfe423a7 { 'aliquot_tag': 'REP_a7d2e4ca', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3L-02617.REP_a7d2e4ca.RNA-Seq.R2_L005.T C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 190702_UNC32-K00270_0188_BH7CLJBBXY_CCGTGAAG-CAGTGGAT_S18_L005_R2_001.fastq.gz 4080947936 FASTQ R2_L005 unaligned CPTAC3 0dfc04ea-3414-43e6-8ab5-b956c15f5b74 983cb0098c28e2801b1c74f03ae9fe52 { 'aliquot_tag': 'REP_a7d2e4ca', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3L-02617.REP_a7d2e4ca.RNA-Seq.R1_L005.T C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 190702_UNC32-K00270_0188_BH7CLJBBXY_CCGTGAAG-CAGTGGAT_S18_L005_R1_001.fastq.gz 3718849103 FASTQ R1_L005 unaligned CPTAC3 512e18e5-4302-4930-b8c2-71a44520f21a 85faf4c07b1bc96a5f0a43edbfe423a7 { 'aliquot_tag': 'REP_a7d2e4ca', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R1', 'lane': 'L005' } +C3L-02617.REP_a7d2e4ca.RNA-Seq.R2_L005.T C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 190702_UNC32-K00270_0188_BH7CLJBBXY_CCGTGAAG-CAGTGGAT_S18_L005_R2_001.fastq.gz 4080947936 FASTQ R2_L005 unaligned CPTAC3 0dfc04ea-3414-43e6-8ab5-b956c15f5b74 983cb0098c28e2801b1c74f03ae9fe52 { 'aliquot_tag': 'REP_a7d2e4ca', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R2', 'lane': 'L005' } C3L-02617.REP_a7d2e4ca.RNA-Seq.transcriptome.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229190013 370e4ce8-eaa0-4342-ae3e-9aad8c294c7a.rna_seq.transcriptome.gdc_realn.bam 8770149643 BAM transcriptome harmonized CPTAC3 1797fab1-ea51-4c2e-a2ed-97d4f78eeba5 7d19a1321a0a7648335712ad16cb86d6 { 'aliquot_tag': 'REP_a7d2e4ca', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3L-02617.REP_cea32104.MethArray.Green.T C3L-02617 HNSCC Methylation Array tumor CPT0229190006 203561620080_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 6b149790-8fea-4d6f-893f-e3ccf62a8023 c79895fa3fa771b5caef4f0be5049386 { 'aliquot_tag': 'REP_cea32104', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } C3L-02617.REP_cea32104.MethArray.Red.T C3L-02617 HNSCC Methylation Array tumor CPT0229190006 203561620080_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 919a4eda-47e0-42e3-b458-a0937502a17f 84417d7d1ab09a1352e5e12e8fb40492 { 'aliquot_tag': 'REP_cea32104', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } @@ -11253,15 +12030,15 @@ C3L-02617.REP_cea32104.WGS.T.hg38 C3L-02617 HNSCC WGS tumor CPT0229190006 be0172 C3L-02617.REP_cea32104.WXS.T C3L-02617 HNSCC WXS tumor CPT0229190006 CPT0229190006.WholeExome.RP-1303.bam 23384774724 BAM aligned CPTAC3 e27459b4-e79e-4f9e-a6a1-76c46f45868f 8b527fa50e5b80ab62a47399effb4e7a { 'aliquot_tag': 'REP_cea32104', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } C3L-02617.REP_cea32104.WXS.T.hg38 C3L-02617 HNSCC WXS tumor CPT0229190006 be017248-e1fd-45fd-b185-d0e102ada4e8_wxs_gdc_realn.bam 31873820322 BAM harmonized CPTAC3 8fc8a057-c842-4ff3-bf06-39b309a28350 7d95082bfb9ac955694b55a9c295efaa { 'aliquot_tag': 'REP_cea32104', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } C3L-02617.RNA-Seq.chimeric.A.hg38 C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 b021eea6-83d1-45d5-b40c-d58785027433.rna_seq.chimeric.gdc_realn.bam 33311631 BAM chimeric harmonized CPTAC3 46648afd-9058-4040-bc17-5fffe0aa0097 140e2985417817f1a8a040f4d4b21ceb { 'aliquot_tag': 'ALQ_9238569a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02617.RNA-Seq.chimeric.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 66d7c72a-4c52-4c59-ab64-e942307ca90a.rna_seq.chimeric.gdc_realn.bam 220011617 BAM chimeric harmonized CPTAC3 cc432c06-d4b9-472e-a90d-3d9c071f24a5 c1cb715cda77c85f1cd43f4cbb2cd774 { 'aliquot_tag': 'ALQ_1136dda5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02617.RNA-Seq.chimeric.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 b8196783-97a3-4e45-afbd-eddaf8853e81.rna_seq.chimeric.gdc_realn.bam 219982249 BAM chimeric harmonized CPTAC3 578ab8ac-60ba-4594-8eda-24a0d1b41ea7 b0eff5465857b26a018e1cad1db7187f { 'aliquot_tag': 'ALQ_1136dda5', 'gdc_sample_type': 'Primary Tumor' } C3L-02617.RNA-Seq.genomic.A.hg38 C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 b021eea6-83d1-45d5-b40c-d58785027433.rna_seq.genomic.gdc_realn.bam 9759263084 BAM genomic harmonized CPTAC3 d7084ba1-11c8-42bf-8720-b862eece3a2d b1d4b2705358b04ea78bd2cf3a22b9ef { 'aliquot_tag': 'ALQ_9238569a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02617.RNA-Seq.genomic.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 66d7c72a-4c52-4c59-ab64-e942307ca90a.rna_seq.genomic.gdc_realn.bam 8077756145 BAM genomic harmonized CPTAC3 a4d8e9e5-64aa-46de-ba0b-7367c9b4a786 ae416fc09bbb3b908860f5271f6c76e1 { 'aliquot_tag': 'ALQ_1136dda5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02617.RNA-Seq.R1_L001.T C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L001_R1_001.fastq.gz 3774086677 FASTQ R1_L001 unaligned CPTAC3 22f265ef-073e-4439-a182-721b1e73ae87 20857bfdc82634d4dff13daf5b027e94 { 'aliquot_tag': 'ALQ_1136dda5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02617.RNA-Seq.R1_L006.A C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 190411_UNC31-K00269_0208_BH3W3KBBXY_TTGGACTC-GGAAGCAG_S26_L006_R1_001.fastq.gz 4477762836 FASTQ R1_L006 unaligned CPTAC3 30658b7a-8b8f-4c36-a0c7-1981c39b600c 077a8c5ebd1305a4b65046110437d976 { 'aliquot_tag': 'ALQ_9238569a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02617.RNA-Seq.R2_L001.T C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L001_R2_001.fastq.gz 4195303625 FASTQ R2_L001 unaligned CPTAC3 a6870dad-b2e8-4229-90dc-a984d0e301ac d69252db560ff05d31b0f62212f7118d { 'aliquot_tag': 'ALQ_1136dda5', 'gdc_sample_type': 'Primary Tumor' } -C3L-02617.RNA-Seq.R2_L006.A C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 190411_UNC31-K00269_0208_BH3W3KBBXY_TTGGACTC-GGAAGCAG_S26_L006_R2_001.fastq.gz 4982512000 FASTQ R2_L006 unaligned CPTAC3 bb027e79-b3eb-4ff4-bdce-b8923531ff38 7f5a640e2d332c23b19d47a3cb81d562 { 'aliquot_tag': 'ALQ_9238569a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02617.RNA-Seq.genomic.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 b8196783-97a3-4e45-afbd-eddaf8853e81.rna_seq.genomic.gdc_realn.bam 8079187493 BAM genomic harmonized CPTAC3 58896a45-987a-4d44-9456-1a23e33ee8d8 1d51dddd90c65b830e04bcf18f975d0d { 'aliquot_tag': 'ALQ_1136dda5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02617.RNA-Seq.R1_L001.T C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L001_R1_001.fastq.gz 3774086677 FASTQ R1_L001 unaligned CPTAC3 22f265ef-073e-4439-a182-721b1e73ae87 20857bfdc82634d4dff13daf5b027e94 { 'aliquot_tag': 'ALQ_1136dda5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02617.RNA-Seq.R1_L006.A C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 190411_UNC31-K00269_0208_BH3W3KBBXY_TTGGACTC-GGAAGCAG_S26_L006_R1_001.fastq.gz 4477762836 FASTQ R1_L006 unaligned CPTAC3 30658b7a-8b8f-4c36-a0c7-1981c39b600c 077a8c5ebd1305a4b65046110437d976 { 'aliquot_tag': 'ALQ_9238569a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-02617.RNA-Seq.R2_L001.T C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L001_R2_001.fastq.gz 4195303625 FASTQ R2_L001 unaligned CPTAC3 a6870dad-b2e8-4229-90dc-a984d0e301ac d69252db560ff05d31b0f62212f7118d { 'aliquot_tag': 'ALQ_1136dda5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02617.RNA-Seq.R2_L006.A C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 190411_UNC31-K00269_0208_BH3W3KBBXY_TTGGACTC-GGAAGCAG_S26_L006_R2_001.fastq.gz 4982512000 FASTQ R2_L006 unaligned CPTAC3 bb027e79-b3eb-4ff4-bdce-b8923531ff38 7f5a640e2d332c23b19d47a3cb81d562 { 'aliquot_tag': 'ALQ_9238569a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3L-02617.RNA-Seq.transcriptome.A.hg38 C3L-02617 HNSCC RNA-Seq tissue_normal CPT0229230009 b021eea6-83d1-45d5-b40c-d58785027433.rna_seq.transcriptome.gdc_realn.bam 13533329345 BAM transcriptome harmonized CPTAC3 3cf66001-a89b-4f46-88c2-b3cb0b75bb34 d534486f63cb9e30b3a220a9c6f51c5c { 'aliquot_tag': 'ALQ_9238569a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02617.RNA-Seq.transcriptome.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 66d7c72a-4c52-4c59-ab64-e942307ca90a.rna_seq.transcriptome.gdc_realn.bam 8766560815 BAM transcriptome harmonized CPTAC3 aa0bd959-57b6-426b-ac06-67c089d53048 b11402f6b2d636ceeadb8c203c021de7 { 'aliquot_tag': 'ALQ_1136dda5', 'gdc_sample_type': 'Primary Tumor' } +C3L-02617.RNA-Seq.transcriptome.T.hg38 C3L-02617 HNSCC RNA-Seq tumor CPT0229210013 b8196783-97a3-4e45-afbd-eddaf8853e81.rna_seq.transcriptome.gdc_realn.bam 9953138621 BAM transcriptome harmonized CPTAC3 49954782-2775-4f95-8f64-8505e29d6038 e98312d09e7ff91cfe01e7bf0aeb91a2 { 'aliquot_tag': 'ALQ_1136dda5', 'gdc_sample_type': 'Primary Tumor' } C3L-02617.WGS.N C3L-02617 HNSCC WGS blood_normal CPT0229330002 CPT0229330002.WholeGenome.RP-1303.bam 50029662993 BAM aligned CPTAC3 fada43cc-f22c-4626-8c7b-6de4b436c304 45fb182cf05bcc89a7f71b1b08d01030 { 'aliquot_tag': 'ALQ_ceb65cb7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02617.WGS.N.hg38 C3L-02617 HNSCC WGS blood_normal CPT0229330002 f13bac4a-9644-49b5-b293-9a1c7bbc403f_wgs_gdc_realn.bam 75722880431 BAM harmonized CPTAC3 417dfe70-1bfe-4de0-930c-61ffe8b20253 e10be1a2c947ecb5083cd0df637b57c8 { 'aliquot_tag': 'ALQ_ceb65cb7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02617.WXS.A C3L-02617 HNSCC WXS tissue_normal CPT0229230006 CPT0229230006.WholeExome.RP-1303.bam 46156720375 BAM aligned CPTAC3 b0093ea5-0716-4bcf-9758-d9851527e6f4 aa17079049b6249855452d69a28fa14c { 'aliquot_tag': 'ALQ_2874b0b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11278,16 +12055,16 @@ C3L-02618.miRNA-Seq.A C3L-02618 LSCC miRNA-Seq tissue_normal CPT0241840009 20051 C3L-02618.miRNA-Seq.A.hg38 C3L-02618 LSCC miRNA-Seq tissue_normal CPT0241840009 bea9f18f-eb91-41a1-87e6-fdc9cda99b8e_mirnaseq_gdc_realn.bam 168527219 BAM harmonized CPTAC3 3439362e-efa7-4105-85ab-0c2a782f7c66 f9cc392d5980a37ab7b65a8c6764cb76 { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02618.miRNA-Seq.T C3L-02618 LSCC miRNA-Seq tumor CPT0241660009 200224_UNC31-K00269_0267_AHC722BBXY_CTAGCT_S38_L007_R1_001.unaln.bam 267125377 BAM unaligned CPTAC3 a45892c5-c497-4d0b-a9d3-80c8590b6e04 21677a60bd26136b0ada28ef5e066cb2 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor' } C3L-02618.miRNA-Seq.T.hg38 C3L-02618 LSCC miRNA-Seq tumor CPT0241660009 12b4c961-3ae9-43b7-a87e-b9b1bf9bb429_mirnaseq_gdc_realn.bam 296426816 BAM harmonized CPTAC3 509a6ab3-0368-4d6f-a458-2bdb6536603a b04fac954bbc54dfc19a0b08570c4c93 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02618.RNA-Seq.chimeric.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 16c8064d-9faa-41d9-8117-10acc34b13ff.rna_seq.chimeric.gdc_realn.bam 37202820 BAM chimeric harmonized CPTAC3 c572aa87-06c3-48f1-82a0-763541e6d375 e90d0c6e5e614242583dfbdd812c36f6 { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02618.RNA-Seq.chimeric.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 5b9f0d28-ed8e-4e7f-86df-b427a98c8b18.rna_seq.chimeric.gdc_realn.bam 36878190 BAM chimeric harmonized CPTAC3 c27ae9f1-8d54-4cf7-bd78-41176ac950dc 9c69e9ed764a536380f8c4332097a763 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02618.RNA-Seq.genomic.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 16c8064d-9faa-41d9-8117-10acc34b13ff.rna_seq.genomic.gdc_realn.bam 7499887056 BAM genomic harmonized CPTAC3 0222d2df-7fdd-4a09-a32e-948af2cd9bb5 9161ed07b65ab417673489d07d6df349 { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02618.RNA-Seq.genomic.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 5b9f0d28-ed8e-4e7f-86df-b427a98c8b18.rna_seq.genomic.gdc_realn.bam 8256353741 BAM genomic harmonized CPTAC3 2723c7e8-629e-4f3e-a9e1-d1825687977b 9ce7d45bba2f3777fe607518574963e0 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02618.RNA-Seq.R1_L002.T C3L-02618 LSCC RNA-Seq tumor CPT0241660009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 4081820593 FASTQ R1_L002 unaligned CPTAC3 1df6b341-bdaf-4768-b1e7-356a5f6fa66c ea22565c1c3ce1feaf58f2249cbaca08 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02618.RNA-Seq.R1_L007.A C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L007_R1_001.fastq.gz 3674769212 FASTQ R1_L007 unaligned CPTAC3 3167e6d4-db7d-44b7-9a34-1a6c8480ca9e 6bf7ce8238c679e856bd43995ab1b397 { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02618.RNA-Seq.R2_L002.T C3L-02618 LSCC RNA-Seq tumor CPT0241660009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 4336151531 FASTQ R2_L002 unaligned CPTAC3 eb266e50-5c8a-4e65-aa08-f9c037a45f46 143f46f938ee5f33f9e183ca5d125ed2 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02618.RNA-Seq.R2_L007.A C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L007_R2_001.fastq.gz 3989295347 FASTQ R2_L007 unaligned CPTAC3 f0a9938b-4a76-49d7-a438-5c5fbb275fa6 80e10812629391d8708319781fae1bd9 { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02618.RNA-Seq.transcriptome.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 16c8064d-9faa-41d9-8117-10acc34b13ff.rna_seq.transcriptome.gdc_realn.bam 7897966161 BAM transcriptome harmonized CPTAC3 ff804b0e-7a88-4589-b6e2-6d6b4ff4ed10 fa2befab215f5670238aaeb60aaf791d { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02618.RNA-Seq.transcriptome.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 5b9f0d28-ed8e-4e7f-86df-b427a98c8b18.rna_seq.transcriptome.gdc_realn.bam 9420384305 BAM transcriptome harmonized CPTAC3 53c4625c-3f62-44a0-bc2c-7ccc47690d09 a3172063d20e17268ec909a49ec9822e { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02618.RNA-Seq.chimeric.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 8e85da0c-3b3e-43c5-9bc0-259d4e43a764.rna_seq.chimeric.gdc_realn.bam 37189276 BAM chimeric harmonized CPTAC3 d6538e66-faab-4872-9621-3dc3616a1e9b bcd003251088bb6ec738506b5aae39e8 { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02618.RNA-Seq.chimeric.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 38f27733-2765-4998-a66d-dd79d5e939e9.rna_seq.chimeric.gdc_realn.bam 36874379 BAM chimeric harmonized CPTAC3 768424cf-e958-4a39-aa79-93ca10860758 f6452b76e981e962d3cbc4e291843c75 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02618.RNA-Seq.genomic.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 8e85da0c-3b3e-43c5-9bc0-259d4e43a764.rna_seq.genomic.gdc_realn.bam 7501011014 BAM genomic harmonized CPTAC3 03cc730e-e60a-4e8a-a814-97c9cccacf3c 81096371d91c2fd8ce9e9f9ea4e2f24c { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02618.RNA-Seq.genomic.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 38f27733-2765-4998-a66d-dd79d5e939e9.rna_seq.genomic.gdc_realn.bam 8257767855 BAM genomic harmonized CPTAC3 21ac0718-24fd-418c-9aef-ba520983c5c8 4ea2b2566ffad30f8e743a6dd0a9ead6 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02618.RNA-Seq.R1_L002.T C3L-02618 LSCC RNA-Seq tumor CPT0241660009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 4081820593 FASTQ R1_L002 unaligned CPTAC3 1df6b341-bdaf-4768-b1e7-356a5f6fa66c ea22565c1c3ce1feaf58f2249cbaca08 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02618.RNA-Seq.R1_L007.A C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L007_R1_001.fastq.gz 3674769212 FASTQ R1_L007 unaligned CPTAC3 3167e6d4-db7d-44b7-9a34-1a6c8480ca9e 6bf7ce8238c679e856bd43995ab1b397 { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-02618.RNA-Seq.R2_L002.T C3L-02618 LSCC RNA-Seq tumor CPT0241660009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 4336151531 FASTQ R2_L002 unaligned CPTAC3 eb266e50-5c8a-4e65-aa08-f9c037a45f46 143f46f938ee5f33f9e183ca5d125ed2 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-02618.RNA-Seq.R2_L007.A C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L007_R2_001.fastq.gz 3989295347 FASTQ R2_L007 unaligned CPTAC3 f0a9938b-4a76-49d7-a438-5c5fbb275fa6 80e10812629391d8708319781fae1bd9 { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-02618.RNA-Seq.transcriptome.A.hg38 C3L-02618 LSCC RNA-Seq tissue_normal CPT0241840009 8e85da0c-3b3e-43c5-9bc0-259d4e43a764.rna_seq.transcriptome.gdc_realn.bam 9011496153 BAM transcriptome harmonized CPTAC3 a32af426-ff3d-4a36-babc-a62bba3b1450 43ed23b20f000eafa5c2677625c85b1f { 'aliquot_tag': 'ALQ_7403ee0c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02618.RNA-Seq.transcriptome.T.hg38 C3L-02618 LSCC RNA-Seq tumor CPT0241660009 38f27733-2765-4998-a66d-dd79d5e939e9.rna_seq.transcriptome.gdc_realn.bam 10664110375 BAM transcriptome harmonized CPTAC3 3b0572da-d06a-4ff8-9a8e-8f52fd51fcc3 6e7cadaf0c4b16feda6bbc03d96d6bd6 { 'aliquot_tag': 'ALQ_34c9dc1c', 'gdc_sample_type': 'Primary Tumor' } C3L-02618.WGS.N C3L-02618 LSCC WGS blood_normal CPT0241930002 CPT0241930002.WholeGenome.RP-2158.bam 19495973747 BAM aligned CPTAC3 292bb6a2-6ac0-43d0-bf8a-9be498895b45 19488fee154b63e55b0005dd323f181e { 'aliquot_tag': 'ALQ_9aad3831', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02618.WGS.N.hg38 C3L-02618 LSCC WGS blood_normal CPT0241930002 0ef644e0-864e-46a0-8539-b5c476cb0739_wgs_gdc_realn.bam 57729873603 BAM harmonized CPTAC3 f47749cb-0565-4d5f-913e-45ed04aa8ff5 9b7ae4df3378745cde142e1b3fc04290 { 'aliquot_tag': 'ALQ_9aad3831', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02618.WGS.T C3L-02618 LSCC WGS tumor CPT0241660006 CPT0241660006.WholeGenome.RP-2158.bam 22137845556 BAM aligned CPTAC3 9fdb93bd-25a9-476b-983c-b4db9e850577 896a6d10eeb858e0e3682052896b00ac { 'aliquot_tag': 'ALQ_a476c18d', 'gdc_sample_type': 'Primary Tumor' } @@ -11308,12 +12085,12 @@ C3L-02619.miRNA-Seq.T C3L-02619 LSCC miRNA-Seq tumor CPT0191860009 181219_UNC31- C3L-02619.miRNA-Seq.T.hg38 C3L-02619 LSCC miRNA-Seq tumor CPT0191860009 bb58e994-28e1-4e7b-8235-b182e2c1d36e_mirnaseq_gdc_realn.bam 211722589 BAM harmonized CPTAC3 a427518a-3b6d-4621-8bd2-24b590c33d9f 98acb01c0718e518a6fb63691ceacbe3 { 'aliquot_tag': 'ALQ_ac4b9478', 'gdc_sample_type': 'Primary Tumor' } C3L-02619.RNA-Seq.chimeric.A.hg38 C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 daafda18-fbeb-4ddf-b6ab-aa97d8f3a3ca.rna_seq.chimeric.gdc_realn.bam 116167945 BAM chimeric harmonized CPTAC3 c08136ac-4eaf-415a-9974-16bcef52a1b1 7aa2de73464556ccd58cd7a3245f7068 { 'aliquot_tag': 'ALQ_3f48d53c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02619.RNA-Seq.chimeric.T.hg38 C3L-02619 LSCC RNA-Seq tumor CPT0191860009 f38ebe27-48bc-4cac-a587-a51599390d53.rna_seq.chimeric.gdc_realn.bam 140087339 BAM chimeric harmonized CPTAC3 33d89ca2-e8df-4440-9eb9-3dd80e8a6d26 bc3d9817ab812188b846ba8f17bd23db { 'aliquot_tag': 'ALQ_ac4b9478', 'gdc_sample_type': 'Primary Tumor' } -C3L-02619.RNA-Seq.genomic.A.hg38 C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 daafda18-fbeb-4ddf-b6ab-aa97d8f3a3ca.rna_seq.genomic.gdc_realn.bam 7065561886 BAM genomic harmonized CPTAC3 9f11fe51-6477-4b0c-852b-005bafbd27e5 7a135a952c14029e1c629d16251ef413 { 'aliquot_tag': 'ALQ_3f48d53c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02619.RNA-Seq.genomic.T.hg38 C3L-02619 LSCC RNA-Seq tumor CPT0191860009 f38ebe27-48bc-4cac-a587-a51599390d53.rna_seq.genomic.gdc_realn.bam 6543497540 BAM genomic harmonized CPTAC3 cbe5136c-a713-4b6b-8692-0cc988b0002d 94fd577a89a97dd2e2973f9ddc5893c1 { 'aliquot_tag': 'ALQ_ac4b9478', 'gdc_sample_type': 'Primary Tumor' } -C3L-02619.RNA-Seq.R1_L003.T C3L-02619 LSCC RNA-Seq tumor CPT0191860009 181207_UNC32-K00270_0136_AH2N7LBBXY_CCGTCC_S12_L003_R1_001.fastq.gz 2810625853 FASTQ R1_L003 unaligned CPTAC3 fa0b3288-254d-4ddf-be1d-30a9f308e479 b34de35ee693a5a461c667d147bd5d82 { 'aliquot_tag': 'ALQ_ac4b9478', 'gdc_sample_type': 'Primary Tumor' } -C3L-02619.RNA-Seq.R1_L005.A C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L005_R1_001.fastq.gz 2942247998 FASTQ R1_L005 unaligned CPTAC3 0bfdc730-4c3b-4e4b-8955-54e22c896cda 5de23d9161a1738a0aff2b319920dfd2 { 'aliquot_tag': 'ALQ_3f48d53c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02619.RNA-Seq.R2_L003.T C3L-02619 LSCC RNA-Seq tumor CPT0191860009 181207_UNC32-K00270_0136_AH2N7LBBXY_CCGTCC_S12_L003_R2_001.fastq.gz 2845096890 FASTQ R2_L003 unaligned CPTAC3 33870c11-875d-4612-b2f5-6fca70a78a51 cb4b6629ec6eb01bd817bf7d879cc454 { 'aliquot_tag': 'ALQ_ac4b9478', 'gdc_sample_type': 'Primary Tumor' } -C3L-02619.RNA-Seq.R2_L005.A C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L005_R2_001.fastq.gz 3194630772 FASTQ R2_L005 unaligned CPTAC3 a5b1ad06-1419-43a9-91de-b5ca9d912edb 1f9cd0b1ef0f5daa7f6bc90283d46487 { 'aliquot_tag': 'ALQ_3f48d53c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02619.RNA-Seq.genomic.A.hg38 C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 daafda18-fbeb-4ddf-b6ab-aa97d8f3a3ca.rna_seq.genomic.gdc_realn.bam 7065561886 BAM genomic harmonized CPTAC3 329c7c26-1c39-4051-ac5b-5407799678d1 7a135a952c14029e1c629d16251ef413 { 'aliquot_tag': 'ALQ_3f48d53c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02619.RNA-Seq.genomic.T.hg38 C3L-02619 LSCC RNA-Seq tumor CPT0191860009 f38ebe27-48bc-4cac-a587-a51599390d53.rna_seq.genomic.gdc_realn.bam 6543497540 BAM genomic harmonized CPTAC3 898ce4a1-8c64-4c19-ae12-a6bf5bdedf19 94fd577a89a97dd2e2973f9ddc5893c1 { 'aliquot_tag': 'ALQ_ac4b9478', 'gdc_sample_type': 'Primary Tumor' } +C3L-02619.RNA-Seq.R1_L003.T C3L-02619 LSCC RNA-Seq tumor CPT0191860009 181207_UNC32-K00270_0136_AH2N7LBBXY_CCGTCC_S12_L003_R1_001.fastq.gz 2810625853 FASTQ R1_L003 unaligned CPTAC3 fa0b3288-254d-4ddf-be1d-30a9f308e479 b34de35ee693a5a461c667d147bd5d82 { 'aliquot_tag': 'ALQ_ac4b9478', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02619.RNA-Seq.R1_L005.A C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L005_R1_001.fastq.gz 2942247998 FASTQ R1_L005 unaligned CPTAC3 0bfdc730-4c3b-4e4b-8955-54e22c896cda 5de23d9161a1738a0aff2b319920dfd2 { 'aliquot_tag': 'ALQ_3f48d53c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02619.RNA-Seq.R2_L003.T C3L-02619 LSCC RNA-Seq tumor CPT0191860009 181207_UNC32-K00270_0136_AH2N7LBBXY_CCGTCC_S12_L003_R2_001.fastq.gz 2845096890 FASTQ R2_L003 unaligned CPTAC3 33870c11-875d-4612-b2f5-6fca70a78a51 cb4b6629ec6eb01bd817bf7d879cc454 { 'aliquot_tag': 'ALQ_ac4b9478', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02619.RNA-Seq.R2_L005.A C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L005_R2_001.fastq.gz 3194630772 FASTQ R2_L005 unaligned CPTAC3 a5b1ad06-1419-43a9-91de-b5ca9d912edb 1f9cd0b1ef0f5daa7f6bc90283d46487 { 'aliquot_tag': 'ALQ_3f48d53c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-02619.RNA-Seq.transcriptome.A.hg38 C3L-02619 LSCC RNA-Seq tissue_normal CPT0191930006 daafda18-fbeb-4ddf-b6ab-aa97d8f3a3ca.rna_seq.transcriptome.gdc_realn.bam 8108245710 BAM transcriptome harmonized CPTAC3 4d985b25-1f04-495c-8428-d2c16d47c9a5 07a21a49d571eb29527b41d4f74e55de { 'aliquot_tag': 'ALQ_3f48d53c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02619.RNA-Seq.transcriptome.T.hg38 C3L-02619 LSCC RNA-Seq tumor CPT0191860009 f38ebe27-48bc-4cac-a587-a51599390d53.rna_seq.transcriptome.gdc_realn.bam 7107702675 BAM transcriptome harmonized CPTAC3 be64ef6a-d1cc-4eab-9311-f0bb7fa73475 7fbb1dc1b4024f1ba651ae2faa509176 { 'aliquot_tag': 'ALQ_ac4b9478', 'gdc_sample_type': 'Primary Tumor' } C3L-02619.WGS.A C3L-02619 LSCC WGS tissue_normal CPT0191930009 CPT0191930009.WholeGenome.RP-1303.bam 64529357779 BAM aligned CPTAC3 ac1220e5-9ecf-40df-9693-4b93994dbb21 bd6a52ee2bfbd284f38dbe3645882d88 { 'aliquot_tag': 'ALQ_aff7c8ad', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11338,12 +12115,12 @@ C3L-02621.miRNA-Seq.T C3L-02621 HNSCC miRNA-Seq tumor CPT0201830010 190228_UNC32 C3L-02621.miRNA-Seq.T.hg38 C3L-02621 HNSCC miRNA-Seq tumor CPT0201830010 3224352a-95c0-4e53-9a9b-b10746f65d01_mirnaseq_gdc_realn.bam 254574045 BAM harmonized CPTAC3 b1d26dbe-810b-46d4-885a-9b142b831d5a f8e4963b8725c5476172078ff6ebeff1 { 'aliquot_tag': 'ALQ_22aeb503', 'gdc_sample_type': 'Primary Tumor' } C3L-02621.RNA-Seq.chimeric.A.hg38 C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 d8301b4c-7f7b-4fc2-b53a-bdce30829509.rna_seq.chimeric.gdc_realn.bam 191015837 BAM chimeric harmonized CPTAC3 5e5f5e62-b277-447e-aa94-76800dd6e2ff f1337dc3e8980ae110a4c307f1266529 { 'aliquot_tag': 'ALQ_ea4e3a73', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02621.RNA-Seq.chimeric.T.hg38 C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 19cf406d-6b0a-44ba-8af8-2641acdf3f96.rna_seq.chimeric.gdc_realn.bam 223119811 BAM chimeric harmonized CPTAC3 8c4c9b95-8ea6-4475-b17f-7e448bbe17b4 1bc73bb06cced2e20c70c437fcadcb6b { 'aliquot_tag': 'ALQ_22aeb503', 'gdc_sample_type': 'Primary Tumor' } -C3L-02621.RNA-Seq.genomic.A.hg38 C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 d8301b4c-7f7b-4fc2-b53a-bdce30829509.rna_seq.genomic.gdc_realn.bam 8771265755 BAM genomic harmonized CPTAC3 6555b197-9343-4d55-981d-364693b0cb72 416b8242c97e095a2bc229d64f2dc20a { 'aliquot_tag': 'ALQ_ea4e3a73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02621.RNA-Seq.genomic.T.hg38 C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 19cf406d-6b0a-44ba-8af8-2641acdf3f96.rna_seq.genomic.gdc_realn.bam 8480345286 BAM genomic harmonized CPTAC3 061f9c28-0bf0-4492-8ec2-31d25c848228 a4f25f3d055c1298f6a6aa73c08cb772 { 'aliquot_tag': 'ALQ_22aeb503', 'gdc_sample_type': 'Primary Tumor' } -C3L-02621.RNA-Seq.R1_L003.A C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 190328_UNC31-K00269_0204_BH5F5NBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4107023882 FASTQ R1_L003 unaligned CPTAC3 265d9f67-617f-483e-a9bd-4e57ca8233e7 34bec79a1b86b735f0e18c423aebfcdf { 'aliquot_tag': 'ALQ_ea4e3a73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02621.RNA-Seq.R1_L007.T C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L007_R1_001.fastq.gz 3836825814 FASTQ R1_L007 unaligned CPTAC3 a7fffb0e-420f-4b9e-913c-734eb8094125 8792d0997f4e651d5d6950025caaba77 { 'aliquot_tag': 'ALQ_22aeb503', 'gdc_sample_type': 'Primary Tumor' } -C3L-02621.RNA-Seq.R2_L003.A C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 190328_UNC31-K00269_0204_BH5F5NBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4628961023 FASTQ R2_L003 unaligned CPTAC3 f9ffd56c-75e7-423e-b828-970d1925f002 853b2e3d504868f78795c5c5bba71e41 { 'aliquot_tag': 'ALQ_ea4e3a73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02621.RNA-Seq.R2_L007.T C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L007_R2_001.fastq.gz 4247918531 FASTQ R2_L007 unaligned CPTAC3 db274a48-4275-4af0-a114-841f96437811 b64a6692e9c31b5f0f52dd8867f97b5e { 'aliquot_tag': 'ALQ_22aeb503', 'gdc_sample_type': 'Primary Tumor' } +C3L-02621.RNA-Seq.genomic.A.hg38 C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 d8301b4c-7f7b-4fc2-b53a-bdce30829509.rna_seq.genomic.gdc_realn.bam 8771265755 BAM genomic harmonized CPTAC3 ceb83175-2d65-4cf2-a1f5-e0d091ad847b 416b8242c97e095a2bc229d64f2dc20a { 'aliquot_tag': 'ALQ_ea4e3a73', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02621.RNA-Seq.genomic.T.hg38 C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 19cf406d-6b0a-44ba-8af8-2641acdf3f96.rna_seq.genomic.gdc_realn.bam 8480345286 BAM genomic harmonized CPTAC3 92ecca8f-a704-4256-b914-752d1723a99f a4f25f3d055c1298f6a6aa73c08cb772 { 'aliquot_tag': 'ALQ_22aeb503', 'gdc_sample_type': 'Primary Tumor' } +C3L-02621.RNA-Seq.R1_L003.A C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 190328_UNC31-K00269_0204_BH5F5NBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4107023882 FASTQ R1_L003 unaligned CPTAC3 265d9f67-617f-483e-a9bd-4e57ca8233e7 34bec79a1b86b735f0e18c423aebfcdf { 'aliquot_tag': 'ALQ_ea4e3a73', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-02621.RNA-Seq.R1_L007.T C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L007_R1_001.fastq.gz 3836825814 FASTQ R1_L007 unaligned CPTAC3 a7fffb0e-420f-4b9e-913c-734eb8094125 8792d0997f4e651d5d6950025caaba77 { 'aliquot_tag': 'ALQ_22aeb503', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02621.RNA-Seq.R2_L003.A C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 190328_UNC31-K00269_0204_BH5F5NBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4628961023 FASTQ R2_L003 unaligned CPTAC3 f9ffd56c-75e7-423e-b828-970d1925f002 853b2e3d504868f78795c5c5bba71e41 { 'aliquot_tag': 'ALQ_ea4e3a73', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-02621.RNA-Seq.R2_L007.T C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L007_R2_001.fastq.gz 4247918531 FASTQ R2_L007 unaligned CPTAC3 db274a48-4275-4af0-a114-841f96437811 b64a6692e9c31b5f0f52dd8867f97b5e { 'aliquot_tag': 'ALQ_22aeb503', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-02621.RNA-Seq.transcriptome.A.hg38 C3L-02621 HNSCC RNA-Seq tissue_normal CPT0201860010 d8301b4c-7f7b-4fc2-b53a-bdce30829509.rna_seq.transcriptome.gdc_realn.bam 12236059586 BAM transcriptome harmonized CPTAC3 c9871b6d-fb07-46b3-80e9-bb6183e103c2 c3bc55f337051562e910b489add8b404 { 'aliquot_tag': 'ALQ_ea4e3a73', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02621.RNA-Seq.transcriptome.T.hg38 C3L-02621 HNSCC RNA-Seq tumor CPT0201830010 19cf406d-6b0a-44ba-8af8-2641acdf3f96.rna_seq.transcriptome.gdc_realn.bam 10049164726 BAM transcriptome harmonized CPTAC3 2f2382fa-739b-467b-9fd9-d6c3887419fb aa7e1ad2b6ae33a69881b18427e2f4d8 { 'aliquot_tag': 'ALQ_22aeb503', 'gdc_sample_type': 'Primary Tumor' } C3L-02621.WGS.N C3L-02621 HNSCC WGS blood_normal CPT0201970002 CPT0201970002.WholeGenome.RP-1303.bam 58733948249 BAM aligned CPTAC3 79b2d397-3845-47ee-8cda-14459d014f69 29125d5ce08358237b444703a4cf4a60 { 'aliquot_tag': 'ALQ_eb67900b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11364,16 +12141,16 @@ C3L-02624.miRNA-Seq.A C3L-02624 LSCC miRNA-Seq tissue_normal CPT0227070009 19020 C3L-02624.miRNA-Seq.A.hg38 C3L-02624 LSCC miRNA-Seq tissue_normal CPT0227070009 9deafcf7-fff8-453a-a20c-94cb9d3eace4_mirnaseq_gdc_realn.bam 229880978 BAM harmonized CPTAC3 e87289df-9eca-4e72-bce2-9a5e1e708397 37252e8cb7ca523bc45f020c3b2cb602 { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02624.miRNA-Seq.T C3L-02624 LSCC miRNA-Seq tumor CPT0227020009 190206_UNC31-K00269_0191_AH2WY5BBXY_GTAGAG_S32_L002_R1_001.unaln.bam 201368151 BAM unaligned CPTAC3 82666cc9-57b1-4460-bf7c-e1392791cd96 da6131ba86503f218e9ab55dde3a139f { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor' } C3L-02624.miRNA-Seq.T.hg38 C3L-02624 LSCC miRNA-Seq tumor CPT0227020009 23d933cd-8c1d-420d-9373-0669304211f4_mirnaseq_gdc_realn.bam 217105926 BAM harmonized CPTAC3 1dc1335d-8a59-4500-a068-6bded8042487 8b43737a3ef9fcabff71a823df0ef374 { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02624.RNA-Seq.chimeric.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 649cc1bd-f2ff-4637-8f61-d981ed262633.rna_seq.chimeric.gdc_realn.bam 76528571 BAM chimeric harmonized CPTAC3 09b83b9f-4d70-402a-bb61-36276f3670bc 7e931b48990dae562aeb239a138c2934 { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02624.RNA-Seq.chimeric.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 98623df4-b23c-4b7b-895c-b898b0587dc2.rna_seq.chimeric.gdc_realn.bam 65728595 BAM chimeric harmonized CPTAC3 5502c216-7d0d-428a-aade-d09d87a2d1ab 8932b39ee76fa45920b09a24c37554b8 { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02624.RNA-Seq.genomic.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 649cc1bd-f2ff-4637-8f61-d981ed262633.rna_seq.genomic.gdc_realn.bam 6277546167 BAM genomic harmonized CPTAC3 924d6817-0176-4743-9c2d-7549afaec0d8 d1e2556a437b281baaeb4be2eaaf50ee { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02624.RNA-Seq.genomic.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 98623df4-b23c-4b7b-895c-b898b0587dc2.rna_seq.genomic.gdc_realn.bam 8668207994 BAM genomic harmonized CPTAC3 5bdb525a-5451-433f-ab04-b34e079dcb15 166ae2b277fed0bf7517162c1d70fadf { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02624.RNA-Seq.R1_L001.T C3L-02624 LSCC RNA-Seq tumor CPT0227020009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L001_R1_001.fastq.gz 3910054887 FASTQ R1_L001 unaligned CPTAC3 5cd74265-d7d3-44d6-a11b-5c2d32232388 f16b0258f0db247d58b1d53dab92183c { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02624.RNA-Seq.R1_L003.A C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L003_R1_001.fastq.gz 2898097253 FASTQ R1_L003 unaligned CPTAC3 68af9350-beb8-4fcb-909a-f6fa91c82d3e 38ad27c2fae4597d8a6c7ebfd441c6c2 { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02624.RNA-Seq.R2_L001.T C3L-02624 LSCC RNA-Seq tumor CPT0227020009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L001_R2_001.fastq.gz 4444601774 FASTQ R2_L001 unaligned CPTAC3 e1a3f69b-ee57-4a0e-8bfb-eef41f0df37c 6d4b0456b0b98d4299df7e387aaeea8b { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02624.RNA-Seq.R2_L003.A C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L003_R2_001.fastq.gz 3233478006 FASTQ R2_L003 unaligned CPTAC3 e5c0fe70-a7f2-4296-9251-f2cce119cdc2 b0e5db38a81d1fcac4b094529a33f58b { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02624.RNA-Seq.transcriptome.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 649cc1bd-f2ff-4637-8f61-d981ed262633.rna_seq.transcriptome.gdc_realn.bam 6395271483 BAM transcriptome harmonized CPTAC3 debd2dc9-c987-4937-9308-ee85e5fbe6b7 de573b64f119d093f16bf5de5ceaac95 { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02624.RNA-Seq.transcriptome.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 98623df4-b23c-4b7b-895c-b898b0587dc2.rna_seq.transcriptome.gdc_realn.bam 6940520883 BAM transcriptome harmonized CPTAC3 de1f886d-879a-4c2b-9352-b933c6400585 1f7030d9c9dd5c25b0a7e1fec3d10f5d { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02624.RNA-Seq.chimeric.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 88c0e4e7-8f8f-417b-b529-7f4512c6a28a.rna_seq.chimeric.gdc_realn.bam 76539259 BAM chimeric harmonized CPTAC3 62fb88e4-9747-4931-b8a7-56744af19335 adcfaec0d82054669d0e1da061aae2c5 { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02624.RNA-Seq.chimeric.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 ebf41464-8c91-4a00-96d4-ee986df5fb68.rna_seq.chimeric.gdc_realn.bam 65714072 BAM chimeric harmonized CPTAC3 2e613a35-2b4e-4623-a692-815ef7db9525 12f24fc2085ceb413106875427fb3e6e { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02624.RNA-Seq.genomic.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 88c0e4e7-8f8f-417b-b529-7f4512c6a28a.rna_seq.genomic.gdc_realn.bam 6278786146 BAM genomic harmonized CPTAC3 c32e8173-f976-4b60-904a-b1f8e7488475 f43bef57b2fcd16de5463f6bb74e1a59 { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02624.RNA-Seq.genomic.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 ebf41464-8c91-4a00-96d4-ee986df5fb68.rna_seq.genomic.gdc_realn.bam 8669049446 BAM genomic harmonized CPTAC3 2b10ddff-aba4-40a5-926d-5d9cb9035041 4c9a7236cb86835a78c6e9d4c7638a48 { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02624.RNA-Seq.R1_L001.T C3L-02624 LSCC RNA-Seq tumor CPT0227020009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L001_R1_001.fastq.gz 3910054887 FASTQ R1_L001 unaligned CPTAC3 5cd74265-d7d3-44d6-a11b-5c2d32232388 f16b0258f0db247d58b1d53dab92183c { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02624.RNA-Seq.R1_L003.A C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L003_R1_001.fastq.gz 2898097253 FASTQ R1_L003 unaligned CPTAC3 68af9350-beb8-4fcb-909a-f6fa91c82d3e 38ad27c2fae4597d8a6c7ebfd441c6c2 { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-02624.RNA-Seq.R2_L001.T C3L-02624 LSCC RNA-Seq tumor CPT0227020009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L001_R2_001.fastq.gz 4444601774 FASTQ R2_L001 unaligned CPTAC3 e1a3f69b-ee57-4a0e-8bfb-eef41f0df37c 6d4b0456b0b98d4299df7e387aaeea8b { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02624.RNA-Seq.R2_L003.A C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L003_R2_001.fastq.gz 3233478006 FASTQ R2_L003 unaligned CPTAC3 e5c0fe70-a7f2-4296-9251-f2cce119cdc2 b0e5db38a81d1fcac4b094529a33f58b { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-02624.RNA-Seq.transcriptome.A.hg38 C3L-02624 LSCC RNA-Seq tissue_normal CPT0227070009 88c0e4e7-8f8f-417b-b529-7f4512c6a28a.rna_seq.transcriptome.gdc_realn.bam 7242031696 BAM transcriptome harmonized CPTAC3 1d7e8411-3c83-4b7b-a94c-fd2ec293d523 ccb7e023402e386e3144c6b9e2f67596 { 'aliquot_tag': 'ALQ_7a4f2a0c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02624.RNA-Seq.transcriptome.T.hg38 C3L-02624 LSCC RNA-Seq tumor CPT0227020009 ebf41464-8c91-4a00-96d4-ee986df5fb68.rna_seq.transcriptome.gdc_realn.bam 7943021158 BAM transcriptome harmonized CPTAC3 7edd98e1-b1d6-4da9-a102-ad56db831f30 e54ddcb57b03a8e133c43d02030c1ffb { 'aliquot_tag': 'ALQ_b2afa57c', 'gdc_sample_type': 'Primary Tumor' } C3L-02624.WGS.A C3L-02624 LSCC WGS tissue_normal CPT0227070006 CPT0227070006.WholeGenome.RP-1303.bam 58761381541 BAM aligned CPTAC3 e1fbb5cf-e789-4962-bd0f-0f969bbeb09a 4f311f15247d379ed37e5da2f0863de0 { 'aliquot_tag': 'ALQ_eaf0379d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02624.WGS.A.hg38 C3L-02624 LSCC WGS tissue_normal CPT0227070006 2f3c18a4-fdda-4b95-95e3-cca183fc73e1_wgs_gdc_realn.bam 85786854562 BAM harmonized CPTAC3 23f67a4c-6297-4d64-8e55-0646b33d7a2c 6c13203c23b978bdab563ca41821dc7c { 'aliquot_tag': 'ALQ_eaf0379d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02624.WGS.N C3L-02624 LSCC WGS blood_normal CPT0227170002 CPT0227170002.WholeGenome.RP-1303.bam 64864111588 BAM aligned CPTAC3 88722b84-b0f4-4eee-9eda-bbd064ebb549 7980a8428a99eadb8840bca012f26cb0 { 'aliquot_tag': 'ALQ_26c12021', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11396,12 +12173,12 @@ C3L-02625.miRNA-Seq.T C3L-02625 LSCC miRNA-Seq tumor CPT0191710009 190828_UNC32- C3L-02625.miRNA-Seq.T.hg38 C3L-02625 LSCC miRNA-Seq tumor CPT0191710009 b7e27b07-7f9d-4ac5-a3b8-c73faf86d07d_mirnaseq_gdc_realn.bam 337317416 BAM harmonized CPTAC3 5e258607-9690-4377-a6bc-dec475380099 41dfc875320aed2c7a7937ed3f51d7b7 { 'aliquot_tag': 'ALQ_ef3dfabd', 'gdc_sample_type': 'Primary Tumor' } C3L-02625.RNA-Seq.chimeric.A.hg38 C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 54c79297-a95d-479a-a472-9919e62ae157.rna_seq.chimeric.gdc_realn.bam 54260379 BAM chimeric harmonized CPTAC3 7098e1c3-16a8-4384-be5b-b3573f9b7529 73d2d7820083fe1019f40fec493cf70c { 'aliquot_tag': 'ALQ_8a0241ec', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02625.RNA-Seq.chimeric.T.hg38 C3L-02625 LSCC RNA-Seq tumor CPT0191710009 4037f4eb-2a7d-4736-83a3-a95f27a4617c.rna_seq.chimeric.gdc_realn.bam 62986653 BAM chimeric harmonized CPTAC3 5d41ff28-5c19-4b85-96c1-36b204e07bae 0f4757437a968ef80489a406dffc47d5 { 'aliquot_tag': 'ALQ_ef3dfabd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02625.RNA-Seq.genomic.A.hg38 C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 54c79297-a95d-479a-a472-9919e62ae157.rna_seq.genomic.gdc_realn.bam 8447707178 BAM genomic harmonized CPTAC3 0d9682d8-f4ef-4e4d-9975-83706bfe3972 d85ec85211ea410a8dd479c529814eeb { 'aliquot_tag': 'ALQ_8a0241ec', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02625.RNA-Seq.genomic.T.hg38 C3L-02625 LSCC RNA-Seq tumor CPT0191710009 4037f4eb-2a7d-4736-83a3-a95f27a4617c.rna_seq.genomic.gdc_realn.bam 9739833130 BAM genomic harmonized CPTAC3 7f1fecf2-1dbd-4f0c-b6fc-9749d7354c2f d0cb9dddf75c3e32dfccbcfd63203fbb { 'aliquot_tag': 'ALQ_ef3dfabd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02625.RNA-Seq.R1_L005.A C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 190205_UNC32-K00270_0144_BH3M3NBBXY_GATCAG_S18_L005_R1_001.fastq.gz 3961905437 FASTQ R1_L005 unaligned CPTAC3 0ae34a3f-8738-4980-8091-9fdef3e94af9 066ddf53db463b1741bfab3966fe8a1e { 'aliquot_tag': 'ALQ_8a0241ec', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02625.RNA-Seq.R1_L005.T C3L-02625 LSCC RNA-Seq tumor CPT0191710009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATGTCA_S17_L005_R1_001.fastq.gz 4106569240 FASTQ R1_L005 unaligned CPTAC3 28c96c62-3cea-4588-81da-ddf4d0d1ec20 a25822ea27a351f5172dabff1a968fb6 { 'aliquot_tag': 'ALQ_ef3dfabd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02625.RNA-Seq.R2_L005.A C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 190205_UNC32-K00270_0144_BH3M3NBBXY_GATCAG_S18_L005_R2_001.fastq.gz 4365451645 FASTQ R2_L005 unaligned CPTAC3 381b6fc2-3ebb-4ff8-84c9-a8096f90a2a4 081f3234241d5bcaeab715b5012a6d92 { 'aliquot_tag': 'ALQ_8a0241ec', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02625.RNA-Seq.R2_L005.T C3L-02625 LSCC RNA-Seq tumor CPT0191710009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATGTCA_S17_L005_R2_001.fastq.gz 4451710393 FASTQ R2_L005 unaligned CPTAC3 f42ddcfe-9bab-4114-a5f6-fc7bafcaf4af 29503dffbe665894681b181e5d15192f { 'aliquot_tag': 'ALQ_ef3dfabd', 'gdc_sample_type': 'Primary Tumor' } +C3L-02625.RNA-Seq.genomic.A.hg38 C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 54c79297-a95d-479a-a472-9919e62ae157.rna_seq.genomic.gdc_realn.bam 8447707178 BAM genomic harmonized CPTAC3 8bcebcbd-b626-46d1-bb20-1c48f7024d7a d85ec85211ea410a8dd479c529814eeb { 'aliquot_tag': 'ALQ_8a0241ec', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02625.RNA-Seq.genomic.T.hg38 C3L-02625 LSCC RNA-Seq tumor CPT0191710009 4037f4eb-2a7d-4736-83a3-a95f27a4617c.rna_seq.genomic.gdc_realn.bam 9739833130 BAM genomic harmonized CPTAC3 809f7a84-1656-47d3-9d3c-f4184853a9e0 d0cb9dddf75c3e32dfccbcfd63203fbb { 'aliquot_tag': 'ALQ_ef3dfabd', 'gdc_sample_type': 'Primary Tumor' } +C3L-02625.RNA-Seq.R1_L005.A C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 190205_UNC32-K00270_0144_BH3M3NBBXY_GATCAG_S18_L005_R1_001.fastq.gz 3961905437 FASTQ R1_L005 unaligned CPTAC3 0ae34a3f-8738-4980-8091-9fdef3e94af9 066ddf53db463b1741bfab3966fe8a1e { 'aliquot_tag': 'ALQ_8a0241ec', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02625.RNA-Seq.R1_L005.T C3L-02625 LSCC RNA-Seq tumor CPT0191710009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATGTCA_S17_L005_R1_001.fastq.gz 4106569240 FASTQ R1_L005 unaligned CPTAC3 28c96c62-3cea-4588-81da-ddf4d0d1ec20 a25822ea27a351f5172dabff1a968fb6 { 'aliquot_tag': 'ALQ_ef3dfabd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02625.RNA-Seq.R2_L005.A C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 190205_UNC32-K00270_0144_BH3M3NBBXY_GATCAG_S18_L005_R2_001.fastq.gz 4365451645 FASTQ R2_L005 unaligned CPTAC3 381b6fc2-3ebb-4ff8-84c9-a8096f90a2a4 081f3234241d5bcaeab715b5012a6d92 { 'aliquot_tag': 'ALQ_8a0241ec', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02625.RNA-Seq.R2_L005.T C3L-02625 LSCC RNA-Seq tumor CPT0191710009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATGTCA_S17_L005_R2_001.fastq.gz 4451710393 FASTQ R2_L005 unaligned CPTAC3 f42ddcfe-9bab-4114-a5f6-fc7bafcaf4af 29503dffbe665894681b181e5d15192f { 'aliquot_tag': 'ALQ_ef3dfabd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-02625.RNA-Seq.transcriptome.A.hg38 C3L-02625 LSCC RNA-Seq tissue_normal CPT0191750006 54c79297-a95d-479a-a472-9919e62ae157.rna_seq.transcriptome.gdc_realn.bam 9389168150 BAM transcriptome harmonized CPTAC3 17b29a50-6256-4639-a8c1-3b933dd576c5 9686dbc32a7330589e2f70b0c45e620e { 'aliquot_tag': 'ALQ_8a0241ec', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02625.RNA-Seq.transcriptome.T.hg38 C3L-02625 LSCC RNA-Seq tumor CPT0191710009 4037f4eb-2a7d-4736-83a3-a95f27a4617c.rna_seq.transcriptome.gdc_realn.bam 10162551868 BAM transcriptome harmonized CPTAC3 5475cc0e-b455-46da-a36f-181a74d294db bd33860c8e59e9c39629e040b44bd46a { 'aliquot_tag': 'ALQ_ef3dfabd', 'gdc_sample_type': 'Primary Tumor' } C3L-02625.WGS.A C3L-02625 LSCC WGS tissue_normal CPT0191750009 CPT0191750009.WholeGenome.RP-1303.bam 64228150615 BAM aligned CPTAC3 8ccc5bb1-8cbb-49e4-bfe8-d6dbd823f187 fca357c0056862acb64519795ddc7ce7 { 'aliquot_tag': 'ALQ_1abd5c7d', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11428,10 +12205,10 @@ C3L-02627.RNA-Seq.chimeric.A.hg38 C3L-02627 LSCC RNA-Seq tissue_normal CPT020204 C3L-02627.RNA-Seq.chimeric.T.hg38 C3L-02627 LSCC RNA-Seq tumor CPT0202020014 6ffad5e2-8458-4be1-8f54-39a584967f66.rna_seq.chimeric.gdc_realn.bam 287110191 BAM chimeric harmonized CPTAC3 6a5e3b57-d8a4-422f-ae6f-ef25464279b0 182a0f089b113940f7fe6a5dbd974c12 { 'aliquot_tag': 'ALQ_c518c05a', 'gdc_sample_type': 'Primary Tumor' } C3L-02627.RNA-Seq.genomic.A.hg38 C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 e01e2896-6247-4d10-8805-e914daa5befd.rna_seq.genomic.gdc_realn.bam 8134397245 BAM genomic harmonized CPTAC3 c59485b2-4c17-43df-b2cb-5658d9c3b921 5adedde3542fb9fc803b8e0405b3959a { 'aliquot_tag': 'ALQ_2df27806', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02627.RNA-Seq.genomic.T.hg38 C3L-02627 LSCC RNA-Seq tumor CPT0202020014 6ffad5e2-8458-4be1-8f54-39a584967f66.rna_seq.genomic.gdc_realn.bam 7986992531 BAM genomic harmonized CPTAC3 08691b35-e66f-4de2-9171-733121628003 18d38d72e72e0e01b0ba595f7b2983e7 { 'aliquot_tag': 'ALQ_c518c05a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02627.RNA-Seq.R1_L006.T C3L-02627 LSCC RNA-Seq tumor CPT0202020014 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 3449870478 FASTQ R1_L006 unaligned CPTAC3 06fdf88a-5317-432c-861d-a33566c8289d ed915cbb9d148970310e50e7ae2bdbff { 'aliquot_tag': 'ALQ_c518c05a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02627.RNA-Seq.R1_L007.A C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGATGT_S22_L007_R1_001.fastq.gz 3920327205 FASTQ R1_L007 unaligned CPTAC3 fbada907-d74d-4ca1-9f34-ee73a0dba9d6 59737002c9fc1ba9f4e5cb1e1bec9124 { 'aliquot_tag': 'ALQ_2df27806', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02627.RNA-Seq.R2_L006.T C3L-02627 LSCC RNA-Seq tumor CPT0202020014 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 3772929069 FASTQ R2_L006 unaligned CPTAC3 f7775c82-5064-4aa9-b045-ef1acd72e1e7 271acb971eb60fce2ed097532efd0ec8 { 'aliquot_tag': 'ALQ_c518c05a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02627.RNA-Seq.R2_L007.A C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGATGT_S22_L007_R2_001.fastq.gz 4177765336 FASTQ R2_L007 unaligned CPTAC3 3653291b-d499-455b-8567-429fc2470f86 dbeec35c7836cbe9e7c7393584c41d57 { 'aliquot_tag': 'ALQ_2df27806', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02627.RNA-Seq.R1_L006.T C3L-02627 LSCC RNA-Seq tumor CPT0202020014 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 3449870478 FASTQ R1_L006 unaligned CPTAC3 06fdf88a-5317-432c-861d-a33566c8289d ed915cbb9d148970310e50e7ae2bdbff { 'aliquot_tag': 'ALQ_c518c05a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02627.RNA-Seq.R1_L007.A C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGATGT_S22_L007_R1_001.fastq.gz 3920327205 FASTQ R1_L007 unaligned CPTAC3 fbada907-d74d-4ca1-9f34-ee73a0dba9d6 59737002c9fc1ba9f4e5cb1e1bec9124 { 'aliquot_tag': 'ALQ_2df27806', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-02627.RNA-Seq.R2_L006.T C3L-02627 LSCC RNA-Seq tumor CPT0202020014 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 3772929069 FASTQ R2_L006 unaligned CPTAC3 f7775c82-5064-4aa9-b045-ef1acd72e1e7 271acb971eb60fce2ed097532efd0ec8 { 'aliquot_tag': 'ALQ_c518c05a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-02627.RNA-Seq.R2_L007.A C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGATGT_S22_L007_R2_001.fastq.gz 4177765336 FASTQ R2_L007 unaligned CPTAC3 3653291b-d499-455b-8567-429fc2470f86 dbeec35c7836cbe9e7c7393584c41d57 { 'aliquot_tag': 'ALQ_2df27806', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-02627.RNA-Seq.transcriptome.A.hg38 C3L-02627 LSCC RNA-Seq tissue_normal CPT0202040009 e01e2896-6247-4d10-8805-e914daa5befd.rna_seq.transcriptome.gdc_realn.bam 8755648171 BAM transcriptome harmonized CPTAC3 1595eeba-3c99-4527-8344-48706369337b 5a8d6ca3f58b2a2c5fe00c464193eb33 { 'aliquot_tag': 'ALQ_2df27806', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02627.RNA-Seq.transcriptome.T.hg38 C3L-02627 LSCC RNA-Seq tumor CPT0202020014 6ffad5e2-8458-4be1-8f54-39a584967f66.rna_seq.transcriptome.gdc_realn.bam 9752846783 BAM transcriptome harmonized CPTAC3 c3ed99ea-6ac6-4147-859f-65789fbfbca2 37b9b1510c84f3cdc32f2574ac2df6b2 { 'aliquot_tag': 'ALQ_c518c05a', 'gdc_sample_type': 'Primary Tumor' } C3L-02627.WGS.A C3L-02627 LSCC WGS tissue_normal CPT0202040006 CPT0202040006.WholeGenome.RP-1303.bam 56787159670 BAM aligned CPTAC3 238ae579-f251-40bb-a23c-c6a03ca46853 dd3712f2a4c7250605d279f63eded3c1 { 'aliquot_tag': 'ALQ_bd4d6597', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11457,11 +12234,11 @@ C3L-02629.miRNA-Seq.T.hg38 C3L-02629 LSCC miRNA-Seq tumor CPT0202170009 4cc50975 C3L-02629.RNA-Seq.chimeric.A.hg38 C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 675ddf76-f1ec-4157-b69b-9d48d2054147.rna_seq.chimeric.gdc_realn.bam 60124755 BAM chimeric harmonized CPTAC3 76c0cbc8-d4c0-4942-a49d-0fd5b966d868 9372ce93d2f32892951b654f460f0ebd { 'aliquot_tag': 'ALQ_8fbda548', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02629.RNA-Seq.chimeric.T.hg38 C3L-02629 LSCC RNA-Seq tumor CPT0202170009 2e9bc79f-3864-4ce7-9341-9c17891248dc.rna_seq.chimeric.gdc_realn.bam 123782511 BAM chimeric harmonized CPTAC3 63bebd41-349b-43df-a6ac-0216541484b0 cbea6adde52184f7ce2e27e00c41e3a1 { 'aliquot_tag': 'ALQ_a10ed173', 'gdc_sample_type': 'Primary Tumor' } C3L-02629.RNA-Seq.genomic.A.hg38 C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 675ddf76-f1ec-4157-b69b-9d48d2054147.rna_seq.genomic.gdc_realn.bam 7717172543 BAM genomic harmonized CPTAC3 27854c5a-1753-458d-a52a-951d91509ec0 f8752d03b34e9b5bba49e964451f6837 { 'aliquot_tag': 'ALQ_8fbda548', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02629.RNA-Seq.genomic.T.hg38 C3L-02629 LSCC RNA-Seq tumor CPT0202170009 2e9bc79f-3864-4ce7-9341-9c17891248dc.rna_seq.genomic.gdc_realn.bam 9778814371 BAM genomic harmonized CPTAC3 1cff4d70-8e17-44a9-9ca3-cceb2e4a0a97 6e939b140f7f116c0cd5325134e84bd0 { 'aliquot_tag': 'ALQ_a10ed173', 'gdc_sample_type': 'Primary Tumor' } -C3L-02629.RNA-Seq.R1_L001.T C3L-02629 LSCC RNA-Seq tumor CPT0202170009 190320_UNC31-K00269_0200_BH5CF5BBXY_GATCAG_S2_L001_R1_001.fastq.gz 4073208240 FASTQ R1_L001 unaligned CPTAC3 01819a3f-5ba5-4885-a6ed-1a6e2ad9b18c cb3efd6744c1d13503407f4f81b1108f { 'aliquot_tag': 'ALQ_a10ed173', 'gdc_sample_type': 'Primary Tumor' } -C3L-02629.RNA-Seq.R1_L007.A C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 190208_UNC32-K00270_0145_AH3VHMBBXY_TTAGGC_S23_L007_R1_001.fastq.gz 3529518354 FASTQ R1_L007 unaligned CPTAC3 82e7b413-d581-4842-b166-c4151b876f26 897cfa202746eb81d18c6d6d4e782b6e { 'aliquot_tag': 'ALQ_8fbda548', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02629.RNA-Seq.R2_L001.T C3L-02629 LSCC RNA-Seq tumor CPT0202170009 190320_UNC31-K00269_0200_BH5CF5BBXY_GATCAG_S2_L001_R2_001.fastq.gz 4553845696 FASTQ R2_L001 unaligned CPTAC3 d571cdec-01e1-4674-8842-18f97f51ba8e 12837bdcd1323c78b00505d9e68176b4 { 'aliquot_tag': 'ALQ_a10ed173', 'gdc_sample_type': 'Primary Tumor' } -C3L-02629.RNA-Seq.R2_L007.A C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 190208_UNC32-K00270_0145_AH3VHMBBXY_TTAGGC_S23_L007_R2_001.fastq.gz 3795486983 FASTQ R2_L007 unaligned CPTAC3 d43fb6ff-5fdf-4c7d-980a-36751852488a b6ee2043675a612cf41c6dd8ddcb9d1d { 'aliquot_tag': 'ALQ_8fbda548', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02629.RNA-Seq.genomic.T.hg38 C3L-02629 LSCC RNA-Seq tumor CPT0202170009 2e9bc79f-3864-4ce7-9341-9c17891248dc.rna_seq.genomic.gdc_realn.bam 9778814371 BAM genomic harmonized CPTAC3 54a5e126-f56b-45bb-a663-4d544898ed8f 6e939b140f7f116c0cd5325134e84bd0 { 'aliquot_tag': 'ALQ_a10ed173', 'gdc_sample_type': 'Primary Tumor' } +C3L-02629.RNA-Seq.R1_L001.T C3L-02629 LSCC RNA-Seq tumor CPT0202170009 190320_UNC31-K00269_0200_BH5CF5BBXY_GATCAG_S2_L001_R1_001.fastq.gz 4073208240 FASTQ R1_L001 unaligned CPTAC3 01819a3f-5ba5-4885-a6ed-1a6e2ad9b18c cb3efd6744c1d13503407f4f81b1108f { 'aliquot_tag': 'ALQ_a10ed173', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02629.RNA-Seq.R1_L007.A C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 190208_UNC32-K00270_0145_AH3VHMBBXY_TTAGGC_S23_L007_R1_001.fastq.gz 3529518354 FASTQ R1_L007 unaligned CPTAC3 82e7b413-d581-4842-b166-c4151b876f26 897cfa202746eb81d18c6d6d4e782b6e { 'aliquot_tag': 'ALQ_8fbda548', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-02629.RNA-Seq.R2_L001.T C3L-02629 LSCC RNA-Seq tumor CPT0202170009 190320_UNC31-K00269_0200_BH5CF5BBXY_GATCAG_S2_L001_R2_001.fastq.gz 4553845696 FASTQ R2_L001 unaligned CPTAC3 d571cdec-01e1-4674-8842-18f97f51ba8e 12837bdcd1323c78b00505d9e68176b4 { 'aliquot_tag': 'ALQ_a10ed173', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02629.RNA-Seq.R2_L007.A C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 190208_UNC32-K00270_0145_AH3VHMBBXY_TTAGGC_S23_L007_R2_001.fastq.gz 3795486983 FASTQ R2_L007 unaligned CPTAC3 d43fb6ff-5fdf-4c7d-980a-36751852488a b6ee2043675a612cf41c6dd8ddcb9d1d { 'aliquot_tag': 'ALQ_8fbda548', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-02629.RNA-Seq.transcriptome.A.hg38 C3L-02629 LSCC RNA-Seq tissue_normal CPT0202220010 675ddf76-f1ec-4157-b69b-9d48d2054147.rna_seq.transcriptome.gdc_realn.bam 8184674017 BAM transcriptome harmonized CPTAC3 6a88ffcf-9474-4e81-8ab2-ea07dd594612 6d9408d811391ced0c257bc0a77cfd8b { 'aliquot_tag': 'ALQ_8fbda548', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02629.RNA-Seq.transcriptome.T.hg38 C3L-02629 LSCC RNA-Seq tumor CPT0202170009 2e9bc79f-3864-4ce7-9341-9c17891248dc.rna_seq.transcriptome.gdc_realn.bam 10903464294 BAM transcriptome harmonized CPTAC3 c018859f-90f7-437c-b317-f8ac19481377 31fac948fe8fbeb8d7ea802cc9bbe531 { 'aliquot_tag': 'ALQ_a10ed173', 'gdc_sample_type': 'Primary Tumor' } C3L-02629.WGS.A C3L-02629 LSCC WGS tissue_normal CPT0202220007 CPT0202220007.WholeGenome.RP-1303.bam 58574571733 BAM aligned CPTAC3 535f75b8-77db-4e5f-8b9c-f05361e8787d 33b37e0e1e792423d8871972f6b47975 { 'aliquot_tag': 'ALQ_8c201aa', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11481,9 +12258,9 @@ C3L-02642.MethArray.Red.T C3L-02642 GBM Methylation Array tumor CPT0201710006 20 C3L-02642.miRNA-Seq.T C3L-02642 GBM miRNA-Seq tumor CPT0201710009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTTGTA_S12_L007_R1_001.unaln.bam 311179903 BAM unaligned CPTAC3 6fc858be-fcf9-488d-a4f5-694573260ec3 b0365c784f5bf0f4ffa75637d1050fe3 { 'aliquot_tag': 'ALQ_c9ffdd53', 'gdc_sample_type': 'Primary Tumor' } C3L-02642.miRNA-Seq.T.hg38 C3L-02642 GBM miRNA-Seq tumor CPT0201710009 109d7654-7e6a-4b17-8f82-b16379140f86_mirnaseq_gdc_realn.bam 352589709 BAM harmonized CPTAC3 a38f69af-c019-4904-a100-da6dbe8c6e12 13c70c706e228936dc2f30e415b5e014 { 'aliquot_tag': 'ALQ_c9ffdd53', 'gdc_sample_type': 'Primary Tumor' } C3L-02642.RNA-Seq.chimeric.T.hg38 C3L-02642 GBM RNA-Seq tumor CPT0201710009 6f1cdd45-5979-4dfc-9ba0-282d79147768.rna_seq.chimeric.gdc_realn.bam 44624439 BAM chimeric harmonized CPTAC3 2382fe10-9e84-40f0-bec5-b990d2734cce 336bd6044aaebe8e074183c94a9837ae { 'aliquot_tag': 'ALQ_c9ffdd53', 'gdc_sample_type': 'Primary Tumor' } -C3L-02642.RNA-Seq.genomic.T.hg38 C3L-02642 GBM RNA-Seq tumor CPT0201710009 6f1cdd45-5979-4dfc-9ba0-282d79147768.rna_seq.genomic.gdc_realn.bam 7699433886 BAM genomic harmonized CPTAC3 56549198-6b81-42e7-93eb-e9bec04a9173 650ee79fa1b65fbecd05f705536d5cca { 'aliquot_tag': 'ALQ_c9ffdd53', 'gdc_sample_type': 'Primary Tumor' } -C3L-02642.RNA-Seq.R1_L004.T C3L-02642 GBM RNA-Seq tumor CPT0201710009 180918_UNC31-K00269_0152_AHWNJTBBXX_TTAGGC_S13_L004_R1_001.fastq.gz 3672568158 FASTQ R1_L004 unaligned CPTAC3 4334c783-04ef-40ab-9904-68713ce55e58 6ff4c67622aae847cd459fab6c4012e4 { 'aliquot_tag': 'ALQ_c9ffdd53', 'gdc_sample_type': 'Primary Tumor' } -C3L-02642.RNA-Seq.R2_L004.T C3L-02642 GBM RNA-Seq tumor CPT0201710009 180918_UNC31-K00269_0152_AHWNJTBBXX_TTAGGC_S13_L004_R2_001.fastq.gz 3778707964 FASTQ R2_L004 unaligned CPTAC3 7cc72175-22fd-41bc-a316-523ce9741ad2 959d86c6c2b45535421dab642ada0e53 { 'aliquot_tag': 'ALQ_c9ffdd53', 'gdc_sample_type': 'Primary Tumor' } +C3L-02642.RNA-Seq.genomic.T.hg38 C3L-02642 GBM RNA-Seq tumor CPT0201710009 6f1cdd45-5979-4dfc-9ba0-282d79147768.rna_seq.genomic.gdc_realn.bam 7699433886 BAM genomic harmonized CPTAC3 ef9146e5-ec71-44ad-b084-63f2aefde6c7 650ee79fa1b65fbecd05f705536d5cca { 'aliquot_tag': 'ALQ_c9ffdd53', 'gdc_sample_type': 'Primary Tumor' } +C3L-02642.RNA-Seq.R1_L004.T C3L-02642 GBM RNA-Seq tumor CPT0201710009 180918_UNC31-K00269_0152_AHWNJTBBXX_TTAGGC_S13_L004_R1_001.fastq.gz 3672568158 FASTQ R1_L004 unaligned CPTAC3 4334c783-04ef-40ab-9904-68713ce55e58 6ff4c67622aae847cd459fab6c4012e4 { 'aliquot_tag': 'ALQ_c9ffdd53', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02642.RNA-Seq.R2_L004.T C3L-02642 GBM RNA-Seq tumor CPT0201710009 180918_UNC31-K00269_0152_AHWNJTBBXX_TTAGGC_S13_L004_R2_001.fastq.gz 3778707964 FASTQ R2_L004 unaligned CPTAC3 7cc72175-22fd-41bc-a316-523ce9741ad2 959d86c6c2b45535421dab642ada0e53 { 'aliquot_tag': 'ALQ_c9ffdd53', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-02642.RNA-Seq.transcriptome.T.hg38 C3L-02642 GBM RNA-Seq tumor CPT0201710009 6f1cdd45-5979-4dfc-9ba0-282d79147768.rna_seq.transcriptome.gdc_realn.bam 9171466128 BAM transcriptome harmonized CPTAC3 16110ff2-eaca-4941-8238-b19d31bacba6 1e0605a4fdbaf2e5be701d6545442505 { 'aliquot_tag': 'ALQ_c9ffdd53', 'gdc_sample_type': 'Primary Tumor' } C3L-02642.WGS.N C3L-02642 GBM WGS blood_normal CPT0201790002 CPT0201790002.WholeGenome.RP-1303.bam 67862526661 BAM aligned CPTAC3 771c1507-2100-4447-b0f0-626321e4e281 8a7fc95cc0270acd0156352334e6fa12 { 'aliquot_tag': 'ALQ_6e5d4f1a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02642.WGS.N.hg38 C3L-02642 GBM WGS blood_normal CPT0201790002 e4bcfb72-dad1-4bc8-93d0-d813e1f4d518_wgs_gdc_realn.bam 99147007103 BAM harmonized CPTAC3 6a033ca3-1a89-4818-9753-e11146c7efa7 31f6be535151732484b6501fd792047f { 'aliquot_tag': 'ALQ_6e5d4f1a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11501,16 +12278,16 @@ C3L-02643.miRNA-Seq.A C3L-02643 LUAD miRNA-Seq tissue_normal CPT0204490009 19072 C3L-02643.miRNA-Seq.A.hg38 C3L-02643 LUAD miRNA-Seq tissue_normal CPT0204490009 1648ff02-786c-4a70-ad02-d4bb6835f318_mirnaseq_gdc_realn.bam 215705545 BAM harmonized CPTAC3 e74903f5-db0c-4b23-88a9-6412d67766d2 a711b17d1f5c8c4a53c18c34a1a43201 { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02643.miRNA-Seq.T C3L-02643 LUAD miRNA-Seq tumor CPT0204430010 190722_UNC31-K00269_0234_AH7VGTBBXY_CACGAT_S25_L004_R1_001.unaln.bam 210928658 BAM unaligned CPTAC3 ca70e9db-1b5b-49c7-91d9-4d3c0e1f6505 e7672adf82470cd2e784d80411f72f25 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor' } C3L-02643.miRNA-Seq.T.hg38 C3L-02643 LUAD miRNA-Seq tumor CPT0204430010 39c56742-7820-4d53-bb49-6786922ef335_mirnaseq_gdc_realn.bam 230746522 BAM harmonized CPTAC3 43ba203f-eb21-477a-b6fb-60b230dd5a96 1ea46dcf6855d9e09d4f2febc7f5f146 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor' } -C3L-02643.RNA-Seq.chimeric.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 79bad9fb-9265-43e3-aa1c-1310506531bb.rna_seq.chimeric.gdc_realn.bam 28644310 BAM chimeric harmonized CPTAC3 77968545-2045-4271-bc07-1de46f28d943 53dbe2cae8c8da207daf3ffe1fe17f94 { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02643.RNA-Seq.chimeric.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 5b9d047e-6d8d-4882-9783-2104646e78bc.rna_seq.chimeric.gdc_realn.bam 23571469 BAM chimeric harmonized CPTAC3 13b806a6-f530-47c1-b955-8ecfc81aacb2 18cf4d41218a3db1849ffb1a1ff8c572 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor' } -C3L-02643.RNA-Seq.genomic.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 79bad9fb-9265-43e3-aa1c-1310506531bb.rna_seq.genomic.gdc_realn.bam 10434750989 BAM genomic harmonized CPTAC3 f36c3fde-937c-41bd-8539-605d47fb2644 fe64f9918d9a3aca2974061b18ef4da7 { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02643.RNA-Seq.genomic.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 5b9d047e-6d8d-4882-9783-2104646e78bc.rna_seq.genomic.gdc_realn.bam 10842417484 BAM genomic harmonized CPTAC3 2449e763-708f-4e0e-94cf-f56ed28de470 e6823407d9f888e41f5377a78396d01d { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor' } -C3L-02643.RNA-Seq.R1_L005.A C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R1_001.fastq.gz 4036861909 FASTQ R1_L005 unaligned CPTAC3 6383ee73-3338-4b7e-8969-1df003fb8f2a f63b75738d779e4d7be7c66dc11bd2fd { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02643.RNA-Seq.R1_L007.T C3L-02643 LUAD RNA-Seq tumor CPT0204430010 190604_UNC32-K00270_0177_AH7F5VBBXY_GGCATTCT-CTAGCTTG_S27_L007_R1_001.fastq.gz 3293591724 FASTQ R1_L007 unaligned CPTAC3 34430823-5630-4f94-80ed-4191d1abd67d 6f1c76fc37528f8307b7c9be10976e43 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor' } -C3L-02643.RNA-Seq.R2_L005.A C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R2_001.fastq.gz 4514638201 FASTQ R2_L005 unaligned CPTAC3 92f0abf9-21bf-4dd3-a3ad-83c13df95348 4d1c6399ed1649d015e4828297bfb9e9 { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02643.RNA-Seq.R2_L007.T C3L-02643 LUAD RNA-Seq tumor CPT0204430010 190604_UNC32-K00270_0177_AH7F5VBBXY_GGCATTCT-CTAGCTTG_S27_L007_R2_001.fastq.gz 3580550859 FASTQ R2_L007 unaligned CPTAC3 55901808-5e7b-49b8-8741-2b461333176d cded07fc0578d9b3fe613045929512a4 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor' } -C3L-02643.RNA-Seq.transcriptome.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 79bad9fb-9265-43e3-aa1c-1310506531bb.rna_seq.transcriptome.gdc_realn.bam 7540558821 BAM transcriptome harmonized CPTAC3 d0899f6f-d364-41e4-9ddd-04edcfc434f1 95a2a92833cc648f936aeeb6ec43d306 { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02643.RNA-Seq.transcriptome.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 5b9d047e-6d8d-4882-9783-2104646e78bc.rna_seq.transcriptome.gdc_realn.bam 5949311511 BAM transcriptome harmonized CPTAC3 2e779954-f948-477b-92cd-b275a39f8ce7 09921dd38e074c5dbef9da8676954bd7 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor' } +C3L-02643.RNA-Seq.chimeric.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 db9a66c3-f5cc-4562-ad5d-1986d0221222.rna_seq.chimeric.gdc_realn.bam 28625694 BAM chimeric harmonized CPTAC3 ede54f48-7b5f-46e0-8408-f05738e2a65c fe34f7e1ca606423bf0fc413b462ebc1 { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02643.RNA-Seq.chimeric.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 f8d63768-e9eb-4b1e-b344-b19985e3fe9e.rna_seq.chimeric.gdc_realn.bam 23559629 BAM chimeric harmonized CPTAC3 c0bb4856-1e12-42a5-bce8-9a000344fbdd d25818200cd1b2faa1177e7f5082c495 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor' } +C3L-02643.RNA-Seq.genomic.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 db9a66c3-f5cc-4562-ad5d-1986d0221222.rna_seq.genomic.gdc_realn.bam 10435622568 BAM genomic harmonized CPTAC3 bc05b97f-70cb-45d7-a00e-6d6bbdb3afb2 6878b3fefa7da7909fbdff8529c761c2 { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02643.RNA-Seq.genomic.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 f8d63768-e9eb-4b1e-b344-b19985e3fe9e.rna_seq.genomic.gdc_realn.bam 10843237123 BAM genomic harmonized CPTAC3 328ea0fc-e532-4d99-9f71-c37e01b9ffdb ff5b695612366cd845fac758fb439ed0 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor' } +C3L-02643.RNA-Seq.R1_L005.A C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R1_001.fastq.gz 4036861909 FASTQ R1_L005 unaligned CPTAC3 6383ee73-3338-4b7e-8969-1df003fb8f2a f63b75738d779e4d7be7c66dc11bd2fd { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02643.RNA-Seq.R1_L007.T C3L-02643 LUAD RNA-Seq tumor CPT0204430010 190604_UNC32-K00270_0177_AH7F5VBBXY_GGCATTCT-CTAGCTTG_S27_L007_R1_001.fastq.gz 3293591724 FASTQ R1_L007 unaligned CPTAC3 34430823-5630-4f94-80ed-4191d1abd67d 6f1c76fc37528f8307b7c9be10976e43 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02643.RNA-Seq.R2_L005.A C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 190607_UNC32-K00270_0178_AH773TBBXY_AGTACTCC-AACCTGTT_S19_L005_R2_001.fastq.gz 4514638201 FASTQ R2_L005 unaligned CPTAC3 92f0abf9-21bf-4dd3-a3ad-83c13df95348 4d1c6399ed1649d015e4828297bfb9e9 { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02643.RNA-Seq.R2_L007.T C3L-02643 LUAD RNA-Seq tumor CPT0204430010 190604_UNC32-K00270_0177_AH7F5VBBXY_GGCATTCT-CTAGCTTG_S27_L007_R2_001.fastq.gz 3580550859 FASTQ R2_L007 unaligned CPTAC3 55901808-5e7b-49b8-8741-2b461333176d cded07fc0578d9b3fe613045929512a4 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02643.RNA-Seq.transcriptome.A.hg38 C3L-02643 LUAD RNA-Seq tissue_normal CPT0204490009 db9a66c3-f5cc-4562-ad5d-1986d0221222.rna_seq.transcriptome.gdc_realn.bam 8479880546 BAM transcriptome harmonized CPTAC3 c2d3f033-8ae8-4062-a158-6285720cfb2d 02b09333922118b9b56db4e7ef0ad21a { 'aliquot_tag': 'ALQ_2d23cb9b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02643.RNA-Seq.transcriptome.T.hg38 C3L-02643 LUAD RNA-Seq tumor CPT0204430010 f8d63768-e9eb-4b1e-b344-b19985e3fe9e.rna_seq.transcriptome.gdc_realn.bam 6689127162 BAM transcriptome harmonized CPTAC3 b93b03a0-e85c-4278-ac7c-561c90581e95 4389edb737583044c6f68757d80e8140 { 'aliquot_tag': 'ALQ_7545adf', 'gdc_sample_type': 'Primary Tumor' } C3L-02643.WGS.N C3L-02643 LUAD WGS blood_normal CPT0204570002 CPT0204570002.WholeGenome.RP-1303.bam 67474004442 BAM aligned CPTAC3 e3960815-0ec8-4400-b5e6-bf216faed4bd 4aa8f2471fb1efbd2dd9575bd771e456 { 'aliquot_tag': 'ALQ_ce9d7fd7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02643.WGS.N.hg38 C3L-02643 LUAD WGS blood_normal CPT0204570002 51166242-6b89-4ecc-8879-769715f7f8c0_wgs_gdc_realn.bam 97542442181 BAM harmonized CPTAC3 f35ae767-3271-40d7-b2ec-0904342aa2b2 1e07623b05392841ff88ac950e4c9586 { 'aliquot_tag': 'ALQ_ce9d7fd7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02643.WGS.T C3L-02643 LUAD WGS tumor CPT0204430007 CPT0204430007.WholeGenome.RP-1303.bam 90180390370 BAM aligned CPTAC3 0b6f9a35-5974-4c6d-a117-9a99ad450687 beae574f63d13aa18067ca76a7427187 { 'aliquot_tag': 'ALQ_802bfe3d', 'gdc_sample_type': 'Primary Tumor' } @@ -11525,11 +12302,11 @@ C3L-02644.MethArray.Green.T C3L-02644 GBM Methylation Array tumor CPT0227810007 C3L-02644.MethArray.Red.T C3L-02644 GBM Methylation Array tumor CPT0227810007 204367490093_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 dcf2f0e2-ff58-406c-97e3-d757907bcd11 ff4097dd3e1dedf8f54eb32858463177 { 'aliquot_tag': 'ALQ_fee470c6', 'gdc_sample_type': 'Primary Tumor' } C3L-02644.miRNA-Seq.T C3L-02644 GBM miRNA-Seq tumor CPT0227810010 200403_UNC31-K00269_0274_AHCF7GBBXY_CCGTCC_S40_L002_R1_001.unaln.bam 198821121 BAM unaligned CPTAC3 827c1489-052e-4eef-a733-e76d03044ff1 95f572043d34346a5c9f22aff3d40a67 { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor' } C3L-02644.miRNA-Seq.T.hg38 C3L-02644 GBM miRNA-Seq tumor CPT0227810010 0fa0e305-2995-463b-b909-bec0df468cb0_mirnaseq_gdc_realn.bam 222417745 BAM harmonized CPTAC3 9db07d7e-0f32-423c-83d6-e1ae2d3d3d0b e57d81f01b57a4d9d3e54262b0f93763 { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor' } -C3L-02644.RNA-Seq.chimeric.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 04bfd1da-b467-47c7-868e-b21c7c64e690.rna_seq.chimeric.gdc_realn.bam 266800522 BAM chimeric harmonized CPTAC3 46bbe7fc-04c2-4868-96cd-1e1171647c1a 4468eb86345d39eaa9c714bd3bdf2e55 { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor' } -C3L-02644.RNA-Seq.genomic.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 04bfd1da-b467-47c7-868e-b21c7c64e690.rna_seq.genomic.gdc_realn.bam 8694502262 BAM genomic harmonized CPTAC3 764bd6b3-ca7d-4f24-b2aa-f75318ba57ef 94456afed3562ed9eccd3c139ff02874 { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor' } -C3L-02644.RNA-Seq.R1_L002.T C3L-02644 GBM RNA-Seq tumor CPT0227810010 200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R1_001.fastq.gz 3584181669 FASTQ R1_L002 unaligned CPTAC3 e7a4ea3c-9561-401b-9378-7ec621b038ea 5620b26bba1e17463c8c58ec7d352c0f { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor' } -C3L-02644.RNA-Seq.R2_L002.T C3L-02644 GBM RNA-Seq tumor CPT0227810010 200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R2_001.fastq.gz 4274180966 FASTQ R2_L002 unaligned CPTAC3 10aec24b-bc0f-4ee3-9179-a94b8da520f4 859d04392f23dbf23daffd5bdbb09f65 { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor' } -C3L-02644.RNA-Seq.transcriptome.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 04bfd1da-b467-47c7-868e-b21c7c64e690.rna_seq.transcriptome.gdc_realn.bam 7621780518 BAM transcriptome harmonized CPTAC3 0debe27f-a5a5-44c1-a009-b905af90f346 c83644449b9b2d115605212e32d47034 { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor' } +C3L-02644.RNA-Seq.chimeric.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 4a6f99f6-2591-42b4-8459-217191d32690.rna_seq.chimeric.gdc_realn.bam 266762654 BAM chimeric harmonized CPTAC3 d61c2bfe-fd5d-4a78-b58e-bec74b2d46c0 bc9715d900895fbd90d40ea41a01e18b { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor' } +C3L-02644.RNA-Seq.genomic.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 4a6f99f6-2591-42b4-8459-217191d32690.rna_seq.genomic.gdc_realn.bam 8695476013 BAM genomic harmonized CPTAC3 29437f61-e40c-47f1-9782-88da36e536c8 a272cda4502ac932bbb72fa34209d475 { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor' } +C3L-02644.RNA-Seq.R1_L002.T C3L-02644 GBM RNA-Seq tumor CPT0227810010 200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R1_001.fastq.gz 3584181669 FASTQ R1_L002 unaligned CPTAC3 e7a4ea3c-9561-401b-9378-7ec621b038ea 5620b26bba1e17463c8c58ec7d352c0f { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02644.RNA-Seq.R2_L002.T C3L-02644 GBM RNA-Seq tumor CPT0227810010 200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R2_001.fastq.gz 4274180966 FASTQ R2_L002 unaligned CPTAC3 10aec24b-bc0f-4ee3-9179-a94b8da520f4 859d04392f23dbf23daffd5bdbb09f65 { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-02644.RNA-Seq.transcriptome.T.hg38 C3L-02644 GBM RNA-Seq tumor CPT0227810010 4a6f99f6-2591-42b4-8459-217191d32690.rna_seq.transcriptome.gdc_realn.bam 8673036127 BAM transcriptome harmonized CPTAC3 4f25a100-9573-4d08-b27e-fe302d7af266 e6ba417d7545f034b3956490d02dddb2 { 'aliquot_tag': 'ALQ_799bd424', 'gdc_sample_type': 'Primary Tumor' } C3L-02644.WGS.N C3L-02644 GBM WGS blood_normal CPT0227900002 CPT0227900002.WholeGenome.RP-2158.bam 26226631010 BAM aligned CPTAC3 91b131b2-0290-462e-b311-60d4e39aba78 63564d8473d7def7428d2607a95ecdde { 'aliquot_tag': 'ALQ_78b27e5c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02644.WGS.N.hg38 C3L-02644 GBM WGS blood_normal CPT0227900002 6cdbd613-0752-40a2-9347-582356daf34f_wgs_gdc_realn.bam 76860325745 BAM harmonized CPTAC3 45a5b3d6-b371-4bf2-8477-3e06f8b6cb56 0e217be205a8f8c0886828381556548a { 'aliquot_tag': 'ALQ_78b27e5c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02644.WGS.T C3L-02644 GBM WGS tumor CPT0227810007 CPT0227810007.WholeGenome.RP-2158.bam 27527064714 BAM aligned CPTAC3 a13b5822-be39-4ba1-9f54-902e9df06f95 10e67e30e7ed2c87dcfa21fad0d27284 { 'aliquot_tag': 'ALQ_fee470c6', 'gdc_sample_type': 'Primary Tumor' } @@ -11543,9 +12320,9 @@ C3L-02646.MethArray.Red.T C3L-02646 LSCC Methylation Array tumor CPT0202530007 2 C3L-02646.miRNA-Seq.T C3L-02646 LSCC miRNA-Seq tumor CPT0202530010 190206_UNC31-K00269_0191_AH2WY5BBXY_CTATAC_S12_L001_R1_001.unaln.bam 235807563 BAM unaligned CPTAC3 f91bc2a5-969c-4f31-a63b-33fcb8ad0dc8 d50112eaaf00806b596d9f82c4c18dfa { 'aliquot_tag': 'ALQ_afd8bc40', 'gdc_sample_type': 'Primary Tumor' } C3L-02646.miRNA-Seq.T.hg38 C3L-02646 LSCC miRNA-Seq tumor CPT0202530010 1f2c18d6-50d1-478d-abb5-9bfbe8b7626c_mirnaseq_gdc_realn.bam 259787484 BAM harmonized CPTAC3 97564b70-95c1-4856-8cea-d8601505d858 5c0f8b30ca21847375cbbcf46b8771fb { 'aliquot_tag': 'ALQ_afd8bc40', 'gdc_sample_type': 'Primary Tumor' } C3L-02646.RNA-Seq.chimeric.T.hg38 C3L-02646 LSCC RNA-Seq tumor CPT0202530010 0ddbbf5c-24ab-400f-bff6-04c19b986227.rna_seq.chimeric.gdc_realn.bam 109265186 BAM chimeric harmonized CPTAC3 9f682f08-1767-4d5f-842a-6649b8de98a1 38802167c96edb04ba5288062e8bd862 { 'aliquot_tag': 'ALQ_afd8bc40', 'gdc_sample_type': 'Primary Tumor' } -C3L-02646.RNA-Seq.genomic.T.hg38 C3L-02646 LSCC RNA-Seq tumor CPT0202530010 0ddbbf5c-24ab-400f-bff6-04c19b986227.rna_seq.genomic.gdc_realn.bam 7543172254 BAM genomic harmonized CPTAC3 ad05f457-ed36-4142-99c5-2e9856819f23 a118dfe3bb9fb66429fbe093bc62f8f3 { 'aliquot_tag': 'ALQ_afd8bc40', 'gdc_sample_type': 'Primary Tumor' } -C3L-02646.RNA-Seq.R1_L008.T C3L-02646 LSCC RNA-Seq tumor CPT0202530010 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R1_001.fastq.gz 3114636179 FASTQ R1_L008 unaligned CPTAC3 36760be8-bc8c-4f1f-bbb5-e7666c6d80ac 0dfd450ade12467a8ea2e747dead73ad { 'aliquot_tag': 'ALQ_afd8bc40', 'gdc_sample_type': 'Primary Tumor' } -C3L-02646.RNA-Seq.R2_L008.T C3L-02646 LSCC RNA-Seq tumor CPT0202530010 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R2_001.fastq.gz 3369137067 FASTQ R2_L008 unaligned CPTAC3 d90d060a-db2c-4010-bb49-fb57929dd7f9 7c25a4f4d4f1be2eec31098dd2a63678 { 'aliquot_tag': 'ALQ_afd8bc40', 'gdc_sample_type': 'Primary Tumor' } +C3L-02646.RNA-Seq.genomic.T.hg38 C3L-02646 LSCC RNA-Seq tumor CPT0202530010 0ddbbf5c-24ab-400f-bff6-04c19b986227.rna_seq.genomic.gdc_realn.bam 7543172254 BAM genomic harmonized CPTAC3 8fa47143-9171-42a2-ad3c-bc6890494296 a118dfe3bb9fb66429fbe093bc62f8f3 { 'aliquot_tag': 'ALQ_afd8bc40', 'gdc_sample_type': 'Primary Tumor' } +C3L-02646.RNA-Seq.R1_L008.T C3L-02646 LSCC RNA-Seq tumor CPT0202530010 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R1_001.fastq.gz 3114636179 FASTQ R1_L008 unaligned CPTAC3 36760be8-bc8c-4f1f-bbb5-e7666c6d80ac 0dfd450ade12467a8ea2e747dead73ad { 'aliquot_tag': 'ALQ_afd8bc40', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02646.RNA-Seq.R2_L008.T C3L-02646 LSCC RNA-Seq tumor CPT0202530010 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L008_R2_001.fastq.gz 3369137067 FASTQ R2_L008 unaligned CPTAC3 d90d060a-db2c-4010-bb49-fb57929dd7f9 7c25a4f4d4f1be2eec31098dd2a63678 { 'aliquot_tag': 'ALQ_afd8bc40', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-02646.RNA-Seq.transcriptome.T.hg38 C3L-02646 LSCC RNA-Seq tumor CPT0202530010 0ddbbf5c-24ab-400f-bff6-04c19b986227.rna_seq.transcriptome.gdc_realn.bam 8019506056 BAM transcriptome harmonized CPTAC3 5c7a84d9-355f-481e-87ab-0b962f8eac7d 47fc805e0382ba494c2823ba1a25a2a1 { 'aliquot_tag': 'ALQ_afd8bc40', 'gdc_sample_type': 'Primary Tumor' } C3L-02646.WGS.N C3L-02646 LSCC WGS blood_normal CPT0202660002 CPT0202660002.WholeGenome.RP-1303.bam 58127616048 BAM aligned CPTAC3 efc0d397-1c8e-4ffc-9e0b-cb4c90f9a592 799c9bcd335430884bbaa40b463d8fd0 { 'aliquot_tag': 'ALQ_16b911f3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02646.WGS.N.hg38 C3L-02646 LSCC WGS blood_normal CPT0202660002 a0d0f408-012f-4580-b28d-aaad9ef55a9f_wgs_gdc_realn.bam 84464346595 BAM harmonized CPTAC3 ab08e047-4767-496d-8028-4150f9381989 31e7c83bcd9cdd260eb917124f193422 { 'aliquot_tag': 'ALQ_16b911f3', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11566,11 +12343,11 @@ C3L-02648.miRNA-Seq.T.hg38 C3L-02648 LSCC miRNA-Seq tumor CPT0204600007 b0b462af C3L-02648.RNA-Seq.chimeric.A.hg38 C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 64b96332-36d7-4342-b94d-574565743b49.rna_seq.chimeric.gdc_realn.bam 167611945 BAM chimeric harmonized CPTAC3 a6cc8524-b5a7-4514-a1ec-aa6082942de8 5847a7e3e2686749a19533e63fc2dbed { 'aliquot_tag': 'ALQ_e2bbfd41', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02648.RNA-Seq.chimeric.T.hg38 C3L-02648 LSCC RNA-Seq tumor CPT0204600007 4d33241a-4dd6-4b96-beef-c4208f031271.rna_seq.chimeric.gdc_realn.bam 120531942 BAM chimeric harmonized CPTAC3 0ee2e5a4-1393-4516-a7b9-8fae8906c996 c0920bdff408af1aa3d6d91a7d7dc4a3 { 'aliquot_tag': 'ALQ_8a4325e6', 'gdc_sample_type': 'Primary Tumor' } C3L-02648.RNA-Seq.genomic.A.hg38 C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 64b96332-36d7-4342-b94d-574565743b49.rna_seq.genomic.gdc_realn.bam 8837248620 BAM genomic harmonized CPTAC3 238b2957-58c0-431d-be51-9cbfaf1f17ee 6dbde5419f13170a45084a9cfead5dbb { 'aliquot_tag': 'ALQ_e2bbfd41', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02648.RNA-Seq.genomic.T.hg38 C3L-02648 LSCC RNA-Seq tumor CPT0204600007 4d33241a-4dd6-4b96-beef-c4208f031271.rna_seq.genomic.gdc_realn.bam 8177696835 BAM genomic harmonized CPTAC3 de13a973-6855-4ad1-b450-40c6fb5bea3a dd30e2399d159f0780838fdd4d0e9df2 { 'aliquot_tag': 'ALQ_8a4325e6', 'gdc_sample_type': 'Primary Tumor' } -C3L-02648.RNA-Seq.R1_L002.A C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4029772230 FASTQ R1_L002 unaligned CPTAC3 929e8362-6fb7-4ee2-b72f-4189ccd885c6 de7677ab672ebe96033be26709c951d6 { 'aliquot_tag': 'ALQ_e2bbfd41', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02648.RNA-Seq.R1_L002.T C3L-02648 LSCC RNA-Seq tumor CPT0204600007 190205_UNC32-K00270_0144_BH3M3NBBXY_GTTTCG_S5_L002_R1_001.fastq.gz 3550054685 FASTQ R1_L002 unaligned CPTAC3 f8c24041-3a00-4433-9fa2-3630b4c2aaff ec5a4f3b22b69635e8b2b15492490c67 { 'aliquot_tag': 'ALQ_8a4325e6', 'gdc_sample_type': 'Primary Tumor' } -C3L-02648.RNA-Seq.R2_L002.A C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4506104079 FASTQ R2_L002 unaligned CPTAC3 14c86078-8e3e-4341-8f4c-a841c8ece202 f93a11480b27d568d5246147cb39bf1d { 'aliquot_tag': 'ALQ_e2bbfd41', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02648.RNA-Seq.R2_L002.T C3L-02648 LSCC RNA-Seq tumor CPT0204600007 190205_UNC32-K00270_0144_BH3M3NBBXY_GTTTCG_S5_L002_R2_001.fastq.gz 4001546962 FASTQ R2_L002 unaligned CPTAC3 1a7b33db-2d08-40f5-ac8e-88bdd1d3507a deac137e2324f3b9c240f9b9e63f6127 { 'aliquot_tag': 'ALQ_8a4325e6', 'gdc_sample_type': 'Primary Tumor' } +C3L-02648.RNA-Seq.genomic.T.hg38 C3L-02648 LSCC RNA-Seq tumor CPT0204600007 4d33241a-4dd6-4b96-beef-c4208f031271.rna_seq.genomic.gdc_realn.bam 8177696835 BAM genomic harmonized CPTAC3 86484545-0621-40ad-b571-7fff5931cf8a dd30e2399d159f0780838fdd4d0e9df2 { 'aliquot_tag': 'ALQ_8a4325e6', 'gdc_sample_type': 'Primary Tumor' } +C3L-02648.RNA-Seq.R1_L002.A C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4029772230 FASTQ R1_L002 unaligned CPTAC3 929e8362-6fb7-4ee2-b72f-4189ccd885c6 de7677ab672ebe96033be26709c951d6 { 'aliquot_tag': 'ALQ_e2bbfd41', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-02648.RNA-Seq.R1_L002.T C3L-02648 LSCC RNA-Seq tumor CPT0204600007 190205_UNC32-K00270_0144_BH3M3NBBXY_GTTTCG_S5_L002_R1_001.fastq.gz 3550054685 FASTQ R1_L002 unaligned CPTAC3 f8c24041-3a00-4433-9fa2-3630b4c2aaff ec5a4f3b22b69635e8b2b15492490c67 { 'aliquot_tag': 'ALQ_8a4325e6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02648.RNA-Seq.R2_L002.A C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4506104079 FASTQ R2_L002 unaligned CPTAC3 14c86078-8e3e-4341-8f4c-a841c8ece202 f93a11480b27d568d5246147cb39bf1d { 'aliquot_tag': 'ALQ_e2bbfd41', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-02648.RNA-Seq.R2_L002.T C3L-02648 LSCC RNA-Seq tumor CPT0204600007 190205_UNC32-K00270_0144_BH3M3NBBXY_GTTTCG_S5_L002_R2_001.fastq.gz 4001546962 FASTQ R2_L002 unaligned CPTAC3 1a7b33db-2d08-40f5-ac8e-88bdd1d3507a deac137e2324f3b9c240f9b9e63f6127 { 'aliquot_tag': 'ALQ_8a4325e6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-02648.RNA-Seq.transcriptome.A.hg38 C3L-02648 LSCC RNA-Seq tissue_normal CPT0204660009 64b96332-36d7-4342-b94d-574565743b49.rna_seq.transcriptome.gdc_realn.bam 9896505295 BAM transcriptome harmonized CPTAC3 3d70d90a-247f-4d8f-af0f-77647570bbb5 0f11fe0361681f4195815271ace40ba1 { 'aliquot_tag': 'ALQ_e2bbfd41', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02648.RNA-Seq.transcriptome.T.hg38 C3L-02648 LSCC RNA-Seq tumor CPT0204600007 4d33241a-4dd6-4b96-beef-c4208f031271.rna_seq.transcriptome.gdc_realn.bam 10175673190 BAM transcriptome harmonized CPTAC3 b951f506-2b78-4122-92f9-87638d463413 3bf806f8fa77773aa9d26f2b9d2a75b3 { 'aliquot_tag': 'ALQ_8a4325e6', 'gdc_sample_type': 'Primary Tumor' } C3L-02648.WGS.A C3L-02648 LSCC WGS tissue_normal CPT0204660006 CPT0204660006.WholeGenome.RP-1303.bam 57891947825 BAM aligned CPTAC3 ccc04fb8-5e4c-4a32-808d-42761c040880 11e40d5c770cccf55d16986d17989f4f { 'aliquot_tag': 'ALQ_7204e0d0', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11595,12 +12372,12 @@ C3L-02649.miRNA-Seq.T C3L-02649 LSCC miRNA-Seq tumor CPT0204800009 190206_UNC31- C3L-02649.miRNA-Seq.T.hg38 C3L-02649 LSCC miRNA-Seq tumor CPT0204800009 37e4900c-40e6-456b-892c-385db2f6f627_mirnaseq_gdc_realn.bam 165092007 BAM harmonized CPTAC3 4a36b2d4-1738-4375-aa48-bf72b998bf51 9cce43327d9e005b3dbe80ee3531687c { 'aliquot_tag': 'ALQ_57f16991', 'gdc_sample_type': 'Primary Tumor' } C3L-02649.RNA-Seq.chimeric.A.hg38 C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 6a1cadb4-dbeb-4df6-9db2-5eac8b99c17e.rna_seq.chimeric.gdc_realn.bam 85759864 BAM chimeric harmonized CPTAC3 90516345-a170-4fb1-ba7e-6bde613d1311 a9afcaed696d0e59bf24ef3c563780b7 { 'aliquot_tag': 'ALQ_2d313af1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02649.RNA-Seq.chimeric.T.hg38 C3L-02649 LSCC RNA-Seq tumor CPT0204800009 311d290a-1465-489c-b842-d95ca66c74a5.rna_seq.chimeric.gdc_realn.bam 122057575 BAM chimeric harmonized CPTAC3 deef0c56-bb0f-43c9-9e1e-05f88253b017 87ddae277e4ae52dbd4ec0d1c7613f8a { 'aliquot_tag': 'ALQ_57f16991', 'gdc_sample_type': 'Primary Tumor' } -C3L-02649.RNA-Seq.genomic.A.hg38 C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 6a1cadb4-dbeb-4df6-9db2-5eac8b99c17e.rna_seq.genomic.gdc_realn.bam 7063762763 BAM genomic harmonized CPTAC3 5312db0e-b55d-4085-acdd-a7885b9b2b1e 9d8466167df74712ce937979133776cf { 'aliquot_tag': 'ALQ_2d313af1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02649.RNA-Seq.genomic.T.hg38 C3L-02649 LSCC RNA-Seq tumor CPT0204800009 311d290a-1465-489c-b842-d95ca66c74a5.rna_seq.genomic.gdc_realn.bam 9009147555 BAM genomic harmonized CPTAC3 1135f408-9b95-48ba-a79c-0058cb1dcc02 3de1bcdb1b0b0921325d468d005416ac { 'aliquot_tag': 'ALQ_57f16991', 'gdc_sample_type': 'Primary Tumor' } -C3L-02649.RNA-Seq.R1_L002.A C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 3068260409 FASTQ R1_L002 unaligned CPTAC3 774c3f15-e308-4e3b-96bc-e30685e9655e 7580cdd6bdf27c6246c2ab7a72d8fd85 { 'aliquot_tag': 'ALQ_2d313af1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02649.RNA-Seq.R1_L002.T C3L-02649 LSCC RNA-Seq tumor CPT0204800009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L002_R1_001.fastq.gz 3924499029 FASTQ R1_L002 unaligned CPTAC3 660ae3d2-975a-48fc-ad93-2c288f4c4cac ea22b3173fbec345bfdee298be72a469 { 'aliquot_tag': 'ALQ_57f16991', 'gdc_sample_type': 'Primary Tumor' } -C3L-02649.RNA-Seq.R2_L002.A C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 3400288572 FASTQ R2_L002 unaligned CPTAC3 fb856237-c04a-45da-9d8b-8f8e15b97d38 076048e2d45ed4969f83035c153c886d { 'aliquot_tag': 'ALQ_2d313af1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02649.RNA-Seq.R2_L002.T C3L-02649 LSCC RNA-Seq tumor CPT0204800009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L002_R2_001.fastq.gz 4358410672 FASTQ R2_L002 unaligned CPTAC3 1d0ac55c-c17d-403f-b40c-2d29a5181eae 4245f32f30378d8f70ff4ba0eff764d4 { 'aliquot_tag': 'ALQ_57f16991', 'gdc_sample_type': 'Primary Tumor' } +C3L-02649.RNA-Seq.genomic.A.hg38 C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 6a1cadb4-dbeb-4df6-9db2-5eac8b99c17e.rna_seq.genomic.gdc_realn.bam 7063762763 BAM genomic harmonized CPTAC3 b40f715b-0a88-4f70-89b3-76ce14f094fd 9d8466167df74712ce937979133776cf { 'aliquot_tag': 'ALQ_2d313af1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02649.RNA-Seq.genomic.T.hg38 C3L-02649 LSCC RNA-Seq tumor CPT0204800009 311d290a-1465-489c-b842-d95ca66c74a5.rna_seq.genomic.gdc_realn.bam 9009147555 BAM genomic harmonized CPTAC3 cd393110-6447-4292-bbb8-fa677a5d1e33 3de1bcdb1b0b0921325d468d005416ac { 'aliquot_tag': 'ALQ_57f16991', 'gdc_sample_type': 'Primary Tumor' } +C3L-02649.RNA-Seq.R1_L002.A C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 3068260409 FASTQ R1_L002 unaligned CPTAC3 774c3f15-e308-4e3b-96bc-e30685e9655e 7580cdd6bdf27c6246c2ab7a72d8fd85 { 'aliquot_tag': 'ALQ_2d313af1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-02649.RNA-Seq.R1_L002.T C3L-02649 LSCC RNA-Seq tumor CPT0204800009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L002_R1_001.fastq.gz 3924499029 FASTQ R1_L002 unaligned CPTAC3 660ae3d2-975a-48fc-ad93-2c288f4c4cac ea22b3173fbec345bfdee298be72a469 { 'aliquot_tag': 'ALQ_57f16991', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02649.RNA-Seq.R2_L002.A C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 3400288572 FASTQ R2_L002 unaligned CPTAC3 fb856237-c04a-45da-9d8b-8f8e15b97d38 076048e2d45ed4969f83035c153c886d { 'aliquot_tag': 'ALQ_2d313af1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-02649.RNA-Seq.R2_L002.T C3L-02649 LSCC RNA-Seq tumor CPT0204800009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L002_R2_001.fastq.gz 4358410672 FASTQ R2_L002 unaligned CPTAC3 1d0ac55c-c17d-403f-b40c-2d29a5181eae 4245f32f30378d8f70ff4ba0eff764d4 { 'aliquot_tag': 'ALQ_57f16991', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-02649.RNA-Seq.transcriptome.A.hg38 C3L-02649 LSCC RNA-Seq tissue_normal CPT0204820009 6a1cadb4-dbeb-4df6-9db2-5eac8b99c17e.rna_seq.transcriptome.gdc_realn.bam 7079438629 BAM transcriptome harmonized CPTAC3 243f1533-2923-472a-8f1c-43880c7f267d 6c2c70b0fe4ee8e374ff04a5b96d7dd7 { 'aliquot_tag': 'ALQ_2d313af1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02649.RNA-Seq.transcriptome.T.hg38 C3L-02649 LSCC RNA-Seq tumor CPT0204800009 311d290a-1465-489c-b842-d95ca66c74a5.rna_seq.transcriptome.gdc_realn.bam 11292459117 BAM transcriptome harmonized CPTAC3 1baee544-e43c-42b8-8bfc-d66932a9022b 63938d828a1e746489fd505f5582363c { 'aliquot_tag': 'ALQ_57f16991', 'gdc_sample_type': 'Primary Tumor' } C3L-02649.WGS.A C3L-02649 LSCC WGS tissue_normal CPT0204820006 CPT0204820006.WholeGenome.RP-1303.bam 60360077481 BAM aligned CPTAC3 da4fcf94-6522-4bb1-8296-a9a2e74dc434 422a0010138911cbec9e692d74e5c6b6 { 'aliquot_tag': 'ALQ_bd8e2760', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11625,12 +12402,12 @@ C3L-02650.miRNA-Seq.T C3L-02650 LSCC miRNA-Seq tumor CPT0204990009 190206_UNC31- C3L-02650.miRNA-Seq.T.hg38 C3L-02650 LSCC miRNA-Seq tumor CPT0204990009 3d60696e-88e5-4e17-a9a4-77938733e970_mirnaseq_gdc_realn.bam 203001188 BAM harmonized CPTAC3 2a741461-c12f-40eb-a163-5880137edae8 9053beb0784663e71487724ab475c605 { 'aliquot_tag': 'ALQ_91bdd845', 'gdc_sample_type': 'Primary Tumor' } C3L-02650.RNA-Seq.chimeric.A.hg38 C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 0eb89067-7087-473a-a35f-45fbb8e26525.rna_seq.chimeric.gdc_realn.bam 69283153 BAM chimeric harmonized CPTAC3 23c17d1c-e901-4951-b106-dd9c9b69c548 911ff1ad2a0cb3f33d98c69fd016df4e { 'aliquot_tag': 'ALQ_1dd5e048', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02650.RNA-Seq.chimeric.T.hg38 C3L-02650 LSCC RNA-Seq tumor CPT0204990009 23eeb87c-f362-429c-bc8d-dc7e9d9761a8.rna_seq.chimeric.gdc_realn.bam 165053637 BAM chimeric harmonized CPTAC3 251b0d64-eefc-4bb6-89d8-fa6948949b61 ec4f1a5c4caaa62315a70a4cf0cda1cd { 'aliquot_tag': 'ALQ_91bdd845', 'gdc_sample_type': 'Primary Tumor' } -C3L-02650.RNA-Seq.genomic.A.hg38 C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 0eb89067-7087-473a-a35f-45fbb8e26525.rna_seq.genomic.gdc_realn.bam 7653357291 BAM genomic harmonized CPTAC3 d3f8a509-8ed3-410f-9c0d-ac01bb03f28b 400c339849a29b159779e3740c054eec { 'aliquot_tag': 'ALQ_1dd5e048', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02650.RNA-Seq.genomic.T.hg38 C3L-02650 LSCC RNA-Seq tumor CPT0204990009 23eeb87c-f362-429c-bc8d-dc7e9d9761a8.rna_seq.genomic.gdc_realn.bam 9662240135 BAM genomic harmonized CPTAC3 edef6884-b8f0-4cec-b598-e5bb137b52b4 cd42538b1e6350444f24018eb777aac9 { 'aliquot_tag': 'ALQ_91bdd845', 'gdc_sample_type': 'Primary Tumor' } -C3L-02650.RNA-Seq.R1_L002.T C3L-02650 LSCC RNA-Seq tumor CPT0204990009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L002_R1_001.fastq.gz 4116920239 FASTQ R1_L002 unaligned CPTAC3 52875c96-57a5-4690-bb20-1b52e8b91674 09b0f527660ee055c9fe54957449d7a1 { 'aliquot_tag': 'ALQ_91bdd845', 'gdc_sample_type': 'Primary Tumor' } -C3L-02650.RNA-Seq.R1_L003.A C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 190208_UNC32-K00270_0145_AH3VHMBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3485391950 FASTQ R1_L003 unaligned CPTAC3 cbe9fab9-c74a-4bf9-9a64-086c18f029a1 b7a4c118310a72b59dc8b07968e9da43 { 'aliquot_tag': 'ALQ_1dd5e048', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02650.RNA-Seq.R2_L002.T C3L-02650 LSCC RNA-Seq tumor CPT0204990009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L002_R2_001.fastq.gz 4479948519 FASTQ R2_L002 unaligned CPTAC3 4a8c3560-09bb-4ce0-af4a-1a1a720c63d5 42d15aca00a8f65417e0290e863ce794 { 'aliquot_tag': 'ALQ_91bdd845', 'gdc_sample_type': 'Primary Tumor' } -C3L-02650.RNA-Seq.R2_L003.A C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 190208_UNC32-K00270_0145_AH3VHMBBXY_GATCAG_S9_L003_R2_001.fastq.gz 3830669394 FASTQ R2_L003 unaligned CPTAC3 f5440b74-3438-4f23-b922-126b6c66b89a f4116186c2a9909d9cb208ed4b0509ab { 'aliquot_tag': 'ALQ_1dd5e048', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02650.RNA-Seq.genomic.A.hg38 C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 0eb89067-7087-473a-a35f-45fbb8e26525.rna_seq.genomic.gdc_realn.bam 7653357291 BAM genomic harmonized CPTAC3 114d4bf1-3b30-47a0-b4e6-29ca8b4b7e50 400c339849a29b159779e3740c054eec { 'aliquot_tag': 'ALQ_1dd5e048', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02650.RNA-Seq.genomic.T.hg38 C3L-02650 LSCC RNA-Seq tumor CPT0204990009 23eeb87c-f362-429c-bc8d-dc7e9d9761a8.rna_seq.genomic.gdc_realn.bam 9662240135 BAM genomic harmonized CPTAC3 8527f9c9-507c-457a-83c4-03e6fbe73913 cd42538b1e6350444f24018eb777aac9 { 'aliquot_tag': 'ALQ_91bdd845', 'gdc_sample_type': 'Primary Tumor' } +C3L-02650.RNA-Seq.R1_L002.T C3L-02650 LSCC RNA-Seq tumor CPT0204990009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L002_R1_001.fastq.gz 4116920239 FASTQ R1_L002 unaligned CPTAC3 52875c96-57a5-4690-bb20-1b52e8b91674 09b0f527660ee055c9fe54957449d7a1 { 'aliquot_tag': 'ALQ_91bdd845', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02650.RNA-Seq.R1_L003.A C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 190208_UNC32-K00270_0145_AH3VHMBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3485391950 FASTQ R1_L003 unaligned CPTAC3 cbe9fab9-c74a-4bf9-9a64-086c18f029a1 b7a4c118310a72b59dc8b07968e9da43 { 'aliquot_tag': 'ALQ_1dd5e048', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-02650.RNA-Seq.R2_L002.T C3L-02650 LSCC RNA-Seq tumor CPT0204990009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L002_R2_001.fastq.gz 4479948519 FASTQ R2_L002 unaligned CPTAC3 4a8c3560-09bb-4ce0-af4a-1a1a720c63d5 42d15aca00a8f65417e0290e863ce794 { 'aliquot_tag': 'ALQ_91bdd845', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-02650.RNA-Seq.R2_L003.A C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 190208_UNC32-K00270_0145_AH3VHMBBXY_GATCAG_S9_L003_R2_001.fastq.gz 3830669394 FASTQ R2_L003 unaligned CPTAC3 f5440b74-3438-4f23-b922-126b6c66b89a f4116186c2a9909d9cb208ed4b0509ab { 'aliquot_tag': 'ALQ_1dd5e048', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3L-02650.RNA-Seq.transcriptome.A.hg38 C3L-02650 LSCC RNA-Seq tissue_normal CPT0205000009 0eb89067-7087-473a-a35f-45fbb8e26525.rna_seq.transcriptome.gdc_realn.bam 8810029528 BAM transcriptome harmonized CPTAC3 857a250e-835f-4a1b-a87a-dda5c4d4d718 49596a8aaf6e42beef2360649fb48efa { 'aliquot_tag': 'ALQ_1dd5e048', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02650.RNA-Seq.transcriptome.T.hg38 C3L-02650 LSCC RNA-Seq tumor CPT0204990009 23eeb87c-f362-429c-bc8d-dc7e9d9761a8.rna_seq.transcriptome.gdc_realn.bam 12421021938 BAM transcriptome harmonized CPTAC3 79012fdd-de8a-45a4-a0c1-ecfd80f67c34 4758593e8cf1f6c2b84813b22e8fb73d { 'aliquot_tag': 'ALQ_91bdd845', 'gdc_sample_type': 'Primary Tumor' } C3L-02650.WGS.A C3L-02650 LSCC WGS tissue_normal CPT0205000006 CPT0205000006.WholeGenome.RP-1303.bam 53669948388 BAM aligned CPTAC3 55e738ef-777f-4679-b52f-4bfb683056b0 0e3ca683e328069e8a8ecc6df97c84c8 { 'aliquot_tag': 'ALQ_8d6afdd9', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11655,12 +12432,12 @@ C3L-02651.miRNA-Seq.T C3L-02651 HNSCC miRNA-Seq tumor CPT0241980010 190228_UNC32 C3L-02651.miRNA-Seq.T.hg38 C3L-02651 HNSCC miRNA-Seq tumor CPT0241980010 83034426-0e21-4d1c-8ee8-372e0acd7eaf_mirnaseq_gdc_realn.bam 288593792 BAM harmonized CPTAC3 a1c7aac7-308a-47e4-9d19-6df3afb8e111 e46ba09dbc981d7685a7c91977adf335 { 'aliquot_tag': 'ALQ_1a68594d', 'gdc_sample_type': 'Primary Tumor' } C3L-02651.RNA-Seq.chimeric.A.hg38 C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 6061a7ca-0f75-4b1c-a4db-b4e43a626eb5.rna_seq.chimeric.gdc_realn.bam 27787732 BAM chimeric harmonized CPTAC3 f5fb8e9e-cd63-4026-b05d-137b19c61084 a957cc5410f567f8646b0afdfc085386 { 'aliquot_tag': 'ALQ_3cff59d9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02651.RNA-Seq.chimeric.T.hg38 C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 f7ce6f0a-a702-4daf-ba87-d8dd8dd83f36.rna_seq.chimeric.gdc_realn.bam 30498989 BAM chimeric harmonized CPTAC3 b075e885-4575-455a-9563-2e22ef4e3927 aad48a2c62f7149518b45241e4ecb9e3 { 'aliquot_tag': 'ALQ_1a68594d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02651.RNA-Seq.genomic.A.hg38 C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 6061a7ca-0f75-4b1c-a4db-b4e43a626eb5.rna_seq.genomic.gdc_realn.bam 7588649779 BAM genomic harmonized CPTAC3 767c2af7-f1de-4b55-b631-e867f32f6c75 9f924a6eacabc6c39aa9586dc73749d8 { 'aliquot_tag': 'ALQ_3cff59d9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02651.RNA-Seq.genomic.T.hg38 C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 f7ce6f0a-a702-4daf-ba87-d8dd8dd83f36.rna_seq.genomic.gdc_realn.bam 8078627012 BAM genomic harmonized CPTAC3 9f654d05-bbcf-4a2c-b018-317c70dc8c60 38716dce1dcc077f5aabc2d4ab5d2089 { 'aliquot_tag': 'ALQ_1a68594d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02651.RNA-Seq.R1_L005.A C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 190416_UNC32-K00270_0165_AH5JY2BBXY_GCGCAAGC-TCACGCCG_S18_L005_R1_001.fastq.gz 3597114940 FASTQ R1_L005 unaligned CPTAC3 2dbd549b-e379-420c-92ed-5d8c178ec879 7e514777a3960cacc5f88300a2dea733 { 'aliquot_tag': 'ALQ_3cff59d9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02651.RNA-Seq.R1_L008.T C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 190522_UNC31-K00269_0217_AH7F5MBBXY_ACGCACCT-GGTGAAGG_S45_L008_R1_001.fastq.gz 3956525663 FASTQ R1_L008 unaligned CPTAC3 0b2cd295-9ab3-41f1-b440-125ee4f411ee 2587998656582c4982155174026495f7 { 'aliquot_tag': 'ALQ_1a68594d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02651.RNA-Seq.R2_L005.A C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 190416_UNC32-K00270_0165_AH5JY2BBXY_GCGCAAGC-TCACGCCG_S18_L005_R2_001.fastq.gz 4047600964 FASTQ R2_L005 unaligned CPTAC3 71d88074-202b-47d6-b1ef-077051148409 c54cab59b4c63207103f17276181bf36 { 'aliquot_tag': 'ALQ_3cff59d9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02651.RNA-Seq.R2_L008.T C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 190522_UNC31-K00269_0217_AH7F5MBBXY_ACGCACCT-GGTGAAGG_S45_L008_R2_001.fastq.gz 4352765519 FASTQ R2_L008 unaligned CPTAC3 04efa0a5-6559-4aa7-a4d7-11d25e62f637 0e404acaaff5c90bbb80a5d385ff6e2b { 'aliquot_tag': 'ALQ_1a68594d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02651.RNA-Seq.genomic.A.hg38 C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 6061a7ca-0f75-4b1c-a4db-b4e43a626eb5.rna_seq.genomic.gdc_realn.bam 7588649779 BAM genomic harmonized CPTAC3 d6de33aa-80e5-4814-84ae-c552d03b1a0b 9f924a6eacabc6c39aa9586dc73749d8 { 'aliquot_tag': 'ALQ_3cff59d9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02651.RNA-Seq.genomic.T.hg38 C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 f7ce6f0a-a702-4daf-ba87-d8dd8dd83f36.rna_seq.genomic.gdc_realn.bam 8078627012 BAM genomic harmonized CPTAC3 ed055d42-733a-4882-ac30-a2e7fb1b7286 38716dce1dcc077f5aabc2d4ab5d2089 { 'aliquot_tag': 'ALQ_1a68594d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02651.RNA-Seq.R1_L005.A C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 190416_UNC32-K00270_0165_AH5JY2BBXY_GCGCAAGC-TCACGCCG_S18_L005_R1_001.fastq.gz 3597114940 FASTQ R1_L005 unaligned CPTAC3 2dbd549b-e379-420c-92ed-5d8c178ec879 7e514777a3960cacc5f88300a2dea733 { 'aliquot_tag': 'ALQ_3cff59d9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02651.RNA-Seq.R1_L008.T C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 190522_UNC31-K00269_0217_AH7F5MBBXY_ACGCACCT-GGTGAAGG_S45_L008_R1_001.fastq.gz 3956525663 FASTQ R1_L008 unaligned CPTAC3 0b2cd295-9ab3-41f1-b440-125ee4f411ee 2587998656582c4982155174026495f7 { 'aliquot_tag': 'ALQ_1a68594d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02651.RNA-Seq.R2_L005.A C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 190416_UNC32-K00270_0165_AH5JY2BBXY_GCGCAAGC-TCACGCCG_S18_L005_R2_001.fastq.gz 4047600964 FASTQ R2_L005 unaligned CPTAC3 71d88074-202b-47d6-b1ef-077051148409 c54cab59b4c63207103f17276181bf36 { 'aliquot_tag': 'ALQ_3cff59d9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02651.RNA-Seq.R2_L008.T C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 190522_UNC31-K00269_0217_AH7F5MBBXY_ACGCACCT-GGTGAAGG_S45_L008_R2_001.fastq.gz 4352765519 FASTQ R2_L008 unaligned CPTAC3 04efa0a5-6559-4aa7-a4d7-11d25e62f637 0e404acaaff5c90bbb80a5d385ff6e2b { 'aliquot_tag': 'ALQ_1a68594d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-02651.RNA-Seq.transcriptome.A.hg38 C3L-02651 HNSCC RNA-Seq tissue_normal CPT0242000010 6061a7ca-0f75-4b1c-a4db-b4e43a626eb5.rna_seq.transcriptome.gdc_realn.bam 11736440951 BAM transcriptome harmonized CPTAC3 b68e0a12-d156-4bed-91cd-36e3c04b5bb1 3385bb19ee0d70ab6488e11b03de5ee7 { 'aliquot_tag': 'ALQ_3cff59d9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02651.RNA-Seq.transcriptome.T.hg38 C3L-02651 HNSCC RNA-Seq tumor CPT0241980010 f7ce6f0a-a702-4daf-ba87-d8dd8dd83f36.rna_seq.transcriptome.gdc_realn.bam 10505568768 BAM transcriptome harmonized CPTAC3 868c5078-f8da-4ae2-929f-9a4c8e363b99 10141909fc25608b054b8f0c7f40022c { 'aliquot_tag': 'ALQ_1a68594d', 'gdc_sample_type': 'Primary Tumor' } C3L-02651.WGS.N C3L-02651 HNSCC WGS blood_normal CPT0242110002 CPT0242110002.WholeGenome.RP-1303.bam 58233984360 BAM aligned CPTAC3 3f4d420d-549c-4e06-9968-0ee9221b1607 f581eca94623f3f14d71c412ef6d0cda { 'aliquot_tag': 'ALQ_3dd6f3a1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11681,16 +12458,16 @@ C3L-02654.miRNA-Seq.A C3L-02654 LUAD miRNA-Seq tissue_normal CPT0205180010 19072 C3L-02654.miRNA-Seq.A.hg38 C3L-02654 LUAD miRNA-Seq tissue_normal CPT0205180010 6885a580-72c8-4a42-a8d9-aa3dda6f7fd7_mirnaseq_gdc_realn.bam 165138044 BAM harmonized CPTAC3 87e5f23c-1651-4e3e-9cab-edf21c8cd464 425e97e7c31b412b6edc91d729fa4948 { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02654.miRNA-Seq.T C3L-02654 LUAD miRNA-Seq tumor CPT0205140009 190722_UNC31-K00269_0234_AH7VGTBBXY_GCCAAT_S2_L007_R1_001.unaln.bam 251681842 BAM unaligned CPTAC3 027a7061-f8ad-469d-9fbc-5ff88022e9a6 ee78ac2b93a3ef35c4c05833b84455e2 { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor' } C3L-02654.miRNA-Seq.T.hg38 C3L-02654 LUAD miRNA-Seq tumor CPT0205140009 5dc44c93-5855-4246-934b-6238801ef4ed_mirnaseq_gdc_realn.bam 282623342 BAM harmonized CPTAC3 57486fd6-b23f-4453-9b38-ab50f7548010 47c6fda835fb15c6de2f8fa637fe3400 { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02654.RNA-Seq.chimeric.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 8fb0be1a-8464-4a9f-8c19-c6d3f6bc9a4e.rna_seq.chimeric.gdc_realn.bam 25971386 BAM chimeric harmonized CPTAC3 ed4ed608-d421-4784-8156-27da5f81e871 dcdb7d1ec86a1bc12fbf0d9864ca4183 { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02654.RNA-Seq.chimeric.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 babc46b9-e243-40d1-927c-6fab0eff176f.rna_seq.chimeric.gdc_realn.bam 38718381 BAM chimeric harmonized CPTAC3 12f60d66-94b5-48e9-a8b1-b041c5301f38 d6f9562ac6d82d709785d66ad4827037 { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02654.RNA-Seq.genomic.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 8fb0be1a-8464-4a9f-8c19-c6d3f6bc9a4e.rna_seq.genomic.gdc_realn.bam 9270224401 BAM genomic harmonized CPTAC3 d03e7bc9-beb9-4aaa-a85b-d8dc5df7caf6 882b7a096a9c7202c760f7b0e6493221 { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02654.RNA-Seq.genomic.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 babc46b9-e243-40d1-927c-6fab0eff176f.rna_seq.genomic.gdc_realn.bam 9528255011 BAM genomic harmonized CPTAC3 880a585f-3ba1-46ca-af70-24480c5e645c e47f12ee94c4f1d72323b9e90b759537 { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02654.RNA-Seq.R1_L005.A C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 190607_UNC32-K00270_0178_AH773TBBXY_GACGTCTT-GGTTCACC_S18_L005_R1_001.fastq.gz 3598529018 FASTQ R1_L005 unaligned CPTAC3 bfa21ea5-8ebb-468a-9a8d-08281ddfa934 8375c6eb81d5f09305f4585a19d0c56a { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02654.RNA-Seq.R1_L007.T C3L-02654 LUAD RNA-Seq tumor CPT0205140009 190607_UNC32-K00270_0179_BH75W2BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R1_001.fastq.gz 4248129777 FASTQ R1_L007 unaligned CPTAC3 09204ce0-68b2-469b-bdf0-f2300ffb5261 ba6e450707eec4b1256b9df941183311 { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02654.RNA-Seq.R2_L005.A C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 190607_UNC32-K00270_0178_AH773TBBXY_GACGTCTT-GGTTCACC_S18_L005_R2_001.fastq.gz 3973847597 FASTQ R2_L005 unaligned CPTAC3 23023be8-439d-4de3-96f7-29739cf6c500 f968056ea9fb1d37ebc8a01491709304 { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02654.RNA-Seq.R2_L007.T C3L-02654 LUAD RNA-Seq tumor CPT0205140009 190607_UNC32-K00270_0179_BH75W2BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R2_001.fastq.gz 4795234915 FASTQ R2_L007 unaligned CPTAC3 6f2d50f6-8e83-4113-92c1-4a88dd64abc2 c5f4687998977c8ea786f038a7cb8672 { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02654.RNA-Seq.transcriptome.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 8fb0be1a-8464-4a9f-8c19-c6d3f6bc9a4e.rna_seq.transcriptome.gdc_realn.bam 6417883556 BAM transcriptome harmonized CPTAC3 5a9c003b-ba45-4ce8-887c-6872cbd2a589 024e9c9093fbb272b17c7c7ba3479ab3 { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02654.RNA-Seq.transcriptome.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 babc46b9-e243-40d1-927c-6fab0eff176f.rna_seq.transcriptome.gdc_realn.bam 9724882580 BAM transcriptome harmonized CPTAC3 20d1e3e4-121b-4e4b-af73-4152722db7c9 d87292ce7916b36f8736a0cb83bbf7cd { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02654.RNA-Seq.chimeric.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 4364090c-6c53-457a-8870-9c8377e0fd7b.rna_seq.chimeric.gdc_realn.bam 25962794 BAM chimeric harmonized CPTAC3 e43ef4cb-57a5-4e6b-8601-f9d194a11228 c827e4aaa271717407b7a70cd427c31a { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02654.RNA-Seq.chimeric.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 bc0435b6-f7ce-4b29-922a-d7f9f1fcfb71.rna_seq.chimeric.gdc_realn.bam 38720916 BAM chimeric harmonized CPTAC3 67bbc7df-d2c2-4501-aefb-70e19271c208 23b297e23ad6c7c04adf2d4b758f53d5 { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02654.RNA-Seq.genomic.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 4364090c-6c53-457a-8870-9c8377e0fd7b.rna_seq.genomic.gdc_realn.bam 9271115226 BAM genomic harmonized CPTAC3 40c7b98c-00e3-4aa1-8fd1-a0419218ba4b 4a454d9a497a37934d464569a1bf077d { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02654.RNA-Seq.genomic.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 bc0435b6-f7ce-4b29-922a-d7f9f1fcfb71.rna_seq.genomic.gdc_realn.bam 9529726901 BAM genomic harmonized CPTAC3 493e521e-192a-4bb4-8021-19dd6b558b63 d757dedd4d6149568e0708ed6167f60e { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02654.RNA-Seq.R1_L005.A C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 190607_UNC32-K00270_0178_AH773TBBXY_GACGTCTT-GGTTCACC_S18_L005_R1_001.fastq.gz 3598529018 FASTQ R1_L005 unaligned CPTAC3 bfa21ea5-8ebb-468a-9a8d-08281ddfa934 8375c6eb81d5f09305f4585a19d0c56a { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02654.RNA-Seq.R1_L007.T C3L-02654 LUAD RNA-Seq tumor CPT0205140009 190607_UNC32-K00270_0179_BH75W2BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R1_001.fastq.gz 4248129777 FASTQ R1_L007 unaligned CPTAC3 09204ce0-68b2-469b-bdf0-f2300ffb5261 ba6e450707eec4b1256b9df941183311 { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02654.RNA-Seq.R2_L005.A C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 190607_UNC32-K00270_0178_AH773TBBXY_GACGTCTT-GGTTCACC_S18_L005_R2_001.fastq.gz 3973847597 FASTQ R2_L005 unaligned CPTAC3 23023be8-439d-4de3-96f7-29739cf6c500 f968056ea9fb1d37ebc8a01491709304 { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02654.RNA-Seq.R2_L007.T C3L-02654 LUAD RNA-Seq tumor CPT0205140009 190607_UNC32-K00270_0179_BH75W2BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R2_001.fastq.gz 4795234915 FASTQ R2_L007 unaligned CPTAC3 6f2d50f6-8e83-4113-92c1-4a88dd64abc2 c5f4687998977c8ea786f038a7cb8672 { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02654.RNA-Seq.transcriptome.A.hg38 C3L-02654 LUAD RNA-Seq tissue_normal CPT0205180010 4364090c-6c53-457a-8870-9c8377e0fd7b.rna_seq.transcriptome.gdc_realn.bam 7231384065 BAM transcriptome harmonized CPTAC3 3a23cc25-5812-4005-b298-fe7cc5834a9a 4e2986b25d88b4d804a066a90d9cfbcb { 'aliquot_tag': 'ALQ_863ef1c9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02654.RNA-Seq.transcriptome.T.hg38 C3L-02654 LUAD RNA-Seq tumor CPT0205140009 bc0435b6-f7ce-4b29-922a-d7f9f1fcfb71.rna_seq.transcriptome.gdc_realn.bam 10989097460 BAM transcriptome harmonized CPTAC3 8dd2f548-69d8-4497-a3af-95bff0c7bae6 84c5a59b36d1c88b6079101c571f11fd { 'aliquot_tag': 'ALQ_2309952d', 'gdc_sample_type': 'Primary Tumor' } C3L-02654.WGS.N C3L-02654 LUAD WGS blood_normal CPT0205290002 CPT0205290002.WholeGenome.RP-1303.bam 85436004676 BAM aligned CPTAC3 42067b50-11cb-4bc3-b22e-4c435f837759 0c46b64e4b848ce24fc08f6fdf89d6e8 { 'aliquot_tag': 'ALQ_cadffaba', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02654.WGS.N.hg38 C3L-02654 LUAD WGS blood_normal CPT0205290002 1d5f98ff-08ed-42b4-8860-a001c6daf5bc_wgs_gdc_realn.bam 128662443074 BAM harmonized CPTAC3 db223147-200e-40e3-829e-7c0a7764e117 a6bbfd148a2658c31a15a78ceb48d49c { 'aliquot_tag': 'ALQ_cadffaba', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02654.WGS.T C3L-02654 LUAD WGS tumor CPT0205140006 CPT0205140006.WholeGenome.RP-1303.bam 90000922576 BAM aligned CPTAC3 578c8a82-e0d2-40df-9c8c-96f062bbbe4d 982d89d84973a1d5975f6ee307330d2b { 'aliquot_tag': 'ALQ_b3b688bc', 'gdc_sample_type': 'Primary Tumor' } @@ -11711,12 +12488,12 @@ C3L-02660.miRNA-Seq.T C3L-02660 LSCC miRNA-Seq tumor CPT0202720009 190206_UNC31- C3L-02660.miRNA-Seq.T.hg38 C3L-02660 LSCC miRNA-Seq tumor CPT0202720009 5c4eba16-0144-40b6-aa31-d4068ee7f27b_mirnaseq_gdc_realn.bam 297837753 BAM harmonized CPTAC3 35646274-2047-45ee-8889-d106da89bd80 aa20e5129607572cbf861bc26edda2dd { 'aliquot_tag': 'ALQ_bfb7bd1e', 'gdc_sample_type': 'Primary Tumor' } C3L-02660.RNA-Seq.chimeric.A.hg38 C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 4d4544e4-5636-4a6d-81a9-24aa505c0c20.rna_seq.chimeric.gdc_realn.bam 160099939 BAM chimeric harmonized CPTAC3 b0ce1b09-8324-4f04-a7e2-dd2f5e4e6aca e04e7d56ccb3097d1ba673de119d3ad8 { 'aliquot_tag': 'ALQ_30f748be', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02660.RNA-Seq.chimeric.T.hg38 C3L-02660 LSCC RNA-Seq tumor CPT0202720009 b88ede6b-81e5-4223-a441-7a6c9b0e3e61.rna_seq.chimeric.gdc_realn.bam 73171391 BAM chimeric harmonized CPTAC3 b72bbc26-1fd1-4d52-b00c-c655d1906f97 62880cbe9626778a885da6a7b00db798 { 'aliquot_tag': 'ALQ_bfb7bd1e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02660.RNA-Seq.genomic.A.hg38 C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 4d4544e4-5636-4a6d-81a9-24aa505c0c20.rna_seq.genomic.gdc_realn.bam 7531180273 BAM genomic harmonized CPTAC3 b6b73557-c05b-43cc-a6e8-e3622a896d21 0df619c0264f3e5a1cc653f1f9fdb0ed { 'aliquot_tag': 'ALQ_30f748be', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02660.RNA-Seq.genomic.T.hg38 C3L-02660 LSCC RNA-Seq tumor CPT0202720009 b88ede6b-81e5-4223-a441-7a6c9b0e3e61.rna_seq.genomic.gdc_realn.bam 8320047997 BAM genomic harmonized CPTAC3 c7b8e6f5-d895-44d0-b950-d19ebfa4ec1a f9dac4e0d6b3b3b7bc8de1d2897a34a4 { 'aliquot_tag': 'ALQ_bfb7bd1e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02660.RNA-Seq.R1_L008.A C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3463798613 FASTQ R1_L008 unaligned CPTAC3 4b4f25d4-86f3-42bd-a24c-8b6ba4444114 8d9adc9411ab8393978573111f9ebb64 { 'aliquot_tag': 'ALQ_30f748be', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02660.RNA-Seq.R1_L008.T C3L-02660 LSCC RNA-Seq tumor CPT0202720009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L008_R1_001.fastq.gz 3261157949 FASTQ R1_L008 unaligned CPTAC3 74a02796-23b8-4058-8ad9-5e7d0a293bca aaff9c3033633415e26dbbd023f8b1fb { 'aliquot_tag': 'ALQ_bfb7bd1e', 'gdc_sample_type': 'Primary Tumor' } -C3L-02660.RNA-Seq.R2_L008.A C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3906929544 FASTQ R2_L008 unaligned CPTAC3 c1aff8d7-7509-42cb-8576-7b78419db74c 59e70815a1f2eb221d85f71de348b590 { 'aliquot_tag': 'ALQ_30f748be', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02660.RNA-Seq.R2_L008.T C3L-02660 LSCC RNA-Seq tumor CPT0202720009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L008_R2_001.fastq.gz 3288875186 FASTQ R2_L008 unaligned CPTAC3 8f915fb8-ea14-41e0-9132-7074288407a4 bf5324e2c02c89705317010b66c4d5cb { 'aliquot_tag': 'ALQ_bfb7bd1e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02660.RNA-Seq.genomic.A.hg38 C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 4d4544e4-5636-4a6d-81a9-24aa505c0c20.rna_seq.genomic.gdc_realn.bam 7531180273 BAM genomic harmonized CPTAC3 5bd290f4-735b-46d3-ae07-6bbf52965b1b 0df619c0264f3e5a1cc653f1f9fdb0ed { 'aliquot_tag': 'ALQ_30f748be', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02660.RNA-Seq.genomic.T.hg38 C3L-02660 LSCC RNA-Seq tumor CPT0202720009 b88ede6b-81e5-4223-a441-7a6c9b0e3e61.rna_seq.genomic.gdc_realn.bam 8320047997 BAM genomic harmonized CPTAC3 c580100d-b38c-4216-b0d9-58af3e1c180c f9dac4e0d6b3b3b7bc8de1d2897a34a4 { 'aliquot_tag': 'ALQ_bfb7bd1e', 'gdc_sample_type': 'Primary Tumor' } +C3L-02660.RNA-Seq.R1_L008.A C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3463798613 FASTQ R1_L008 unaligned CPTAC3 4b4f25d4-86f3-42bd-a24c-8b6ba4444114 8d9adc9411ab8393978573111f9ebb64 { 'aliquot_tag': 'ALQ_30f748be', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02660.RNA-Seq.R1_L008.T C3L-02660 LSCC RNA-Seq tumor CPT0202720009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L008_R1_001.fastq.gz 3261157949 FASTQ R1_L008 unaligned CPTAC3 74a02796-23b8-4058-8ad9-5e7d0a293bca aaff9c3033633415e26dbbd023f8b1fb { 'aliquot_tag': 'ALQ_bfb7bd1e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02660.RNA-Seq.R2_L008.A C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3906929544 FASTQ R2_L008 unaligned CPTAC3 c1aff8d7-7509-42cb-8576-7b78419db74c 59e70815a1f2eb221d85f71de348b590 { 'aliquot_tag': 'ALQ_30f748be', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02660.RNA-Seq.R2_L008.T C3L-02660 LSCC RNA-Seq tumor CPT0202720009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L008_R2_001.fastq.gz 3288875186 FASTQ R2_L008 unaligned CPTAC3 8f915fb8-ea14-41e0-9132-7074288407a4 bf5324e2c02c89705317010b66c4d5cb { 'aliquot_tag': 'ALQ_bfb7bd1e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-02660.RNA-Seq.transcriptome.A.hg38 C3L-02660 LSCC RNA-Seq tissue_normal CPT0202740009 4d4544e4-5636-4a6d-81a9-24aa505c0c20.rna_seq.transcriptome.gdc_realn.bam 8266345122 BAM transcriptome harmonized CPTAC3 103449ae-6898-45dc-bc38-d4db41b159b2 f8e73a4bb7e04fab35ad106f4411a295 { 'aliquot_tag': 'ALQ_30f748be', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02660.RNA-Seq.transcriptome.T.hg38 C3L-02660 LSCC RNA-Seq tumor CPT0202720009 b88ede6b-81e5-4223-a441-7a6c9b0e3e61.rna_seq.transcriptome.gdc_realn.bam 7882206706 BAM transcriptome harmonized CPTAC3 afc2051f-6692-4afa-8459-f4b527fbe247 85c3c3b68bee70440d83e8c0e8966c34 { 'aliquot_tag': 'ALQ_bfb7bd1e', 'gdc_sample_type': 'Primary Tumor' } C3L-02660.WGS.A C3L-02660 LSCC WGS tissue_normal CPT0202740006 CPT0202740006.WholeGenome.RP-1303.bam 59434989618 BAM aligned CPTAC3 70cbd5d8-5b90-4783-ade5-3a7e04b70898 d6ebd8527714b9e6e1214ab8828eb601 { 'aliquot_tag': 'ALQ_a048552f', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11739,16 +12516,16 @@ C3L-02661.miRNA-Seq.A C3L-02661 LUAD miRNA-Seq tissue_normal CPT0192430009 19013 C3L-02661.miRNA-Seq.A.hg38 C3L-02661 LUAD miRNA-Seq tissue_normal CPT0192430009 7ff7662e-351f-4a1d-aa7a-57794a7698f6_mirnaseq_gdc_realn.bam 300772175 BAM harmonized CPTAC3 d92323d6-e76a-421b-a61d-9f81e1f704df 17ba014ce1f2a81ec77cb9460ba15814 { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02661.miRNA-Seq.T C3L-02661 LUAD miRNA-Seq tumor CPT0192380009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L006_R1_001.unaln.bam 220890246 BAM unaligned CPTAC3 a1b8bee1-ed82-491c-8298-76bcd16dee27 7192dee76fef34464e6634d81cddf269 { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor' } C3L-02661.miRNA-Seq.T.hg38 C3L-02661 LUAD miRNA-Seq tumor CPT0192380009 946d6792-bf86-4716-bbcc-b59dc9203aaf_mirnaseq_gdc_realn.bam 241394137 BAM harmonized CPTAC3 aa9542d6-4762-4ef1-b255-c357f296c3c7 2a45885e9686e46bddca80c143951bc6 { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor' } -C3L-02661.RNA-Seq.chimeric.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 0e6be0fb-b568-47a4-a734-bbf380e05a55.rna_seq.chimeric.gdc_realn.bam 44932692 BAM chimeric harmonized CPTAC3 60504996-5837-45ff-906d-78d3e89f5ffd 760ce2cde65166b2d650d7761e07c94b { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02661.RNA-Seq.chimeric.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 f71c53eb-797b-4968-b8c5-d73835fa10b9.rna_seq.chimeric.gdc_realn.bam 49032977 BAM chimeric harmonized CPTAC3 fdf42471-ae08-4a1a-993c-030981c71e2e da9db5590ef9aafe1d8fcee7b146b4c9 { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor' } -C3L-02661.RNA-Seq.genomic.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 0e6be0fb-b568-47a4-a734-bbf380e05a55.rna_seq.genomic.gdc_realn.bam 8357477173 BAM genomic harmonized CPTAC3 665715d7-77e1-4107-a374-9217009530a9 cd1843830cb46f8e61d338f8a36c02c9 { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02661.RNA-Seq.genomic.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 f71c53eb-797b-4968-b8c5-d73835fa10b9.rna_seq.genomic.gdc_realn.bam 10031567351 BAM genomic harmonized CPTAC3 1cbbb29b-a8b4-4ae9-81f0-8b32fd043da5 f6de244d5ac0c265ba14a0cef9927b78 { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor' } -C3L-02661.RNA-Seq.R1_L004.A C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 190201_UNC31-K00269_0190_BH3LFKBBXY_CTTGTA_S13_L004_R1_001.fastq.gz 3818022004 FASTQ R1_L004 unaligned CPTAC3 29105d2e-da1a-4b01-a43d-978652b480da 87e1ab539f999af58880ed7e5f57d6a7 { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02661.RNA-Seq.R1_L007.T C3L-02661 LUAD RNA-Seq tumor CPT0192380009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L007_R1_001.fastq.gz 4594708120 FASTQ R1_L007 unaligned CPTAC3 8bf8131a-1bfd-420a-a617-29cf7cd5595a 2a741b496fed6995b6756f39cb32c08d { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor' } -C3L-02661.RNA-Seq.R2_L004.A C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 190201_UNC31-K00269_0190_BH3LFKBBXY_CTTGTA_S13_L004_R2_001.fastq.gz 4231112363 FASTQ R2_L004 unaligned CPTAC3 0a73c3fd-b91a-4933-b213-bcd787861324 d3086a1baba82d0f1b172fad585ae046 { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02661.RNA-Seq.R2_L007.T C3L-02661 LUAD RNA-Seq tumor CPT0192380009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L007_R2_001.fastq.gz 5042475468 FASTQ R2_L007 unaligned CPTAC3 dd066b3b-d5c8-45c4-a854-221d47dae8f2 751de8299d1dc0f23312ccf958108889 { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor' } -C3L-02661.RNA-Seq.transcriptome.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 0e6be0fb-b568-47a4-a734-bbf380e05a55.rna_seq.transcriptome.gdc_realn.bam 8432671738 BAM transcriptome harmonized CPTAC3 566157fe-5db2-46e0-bba6-22cba829b140 a5d05ff3c0dfaae6046c84ca3bf4c3bd { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02661.RNA-Seq.transcriptome.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 f71c53eb-797b-4968-b8c5-d73835fa10b9.rna_seq.transcriptome.gdc_realn.bam 10726608644 BAM transcriptome harmonized CPTAC3 64240fba-bc72-4252-a5ef-ceed32690c81 d43b260aaa9179df519b29b9954b5b3f { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor' } +C3L-02661.RNA-Seq.chimeric.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 e0eda260-cf83-4cd4-8eee-56a839bf4712.rna_seq.chimeric.gdc_realn.bam 44920469 BAM chimeric harmonized CPTAC3 721f0aec-9c8a-4ebe-89c1-53bb9e500085 22a431f382e4a28ed4bba9568fcff7c5 { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02661.RNA-Seq.chimeric.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 45369480-8c9e-4fbd-871f-7f6b4e0cd682.rna_seq.chimeric.gdc_realn.bam 49024073 BAM chimeric harmonized CPTAC3 d73a7e35-639e-4488-9cfb-23bb39d9e274 c113e5275d7e16e3d50acc1851f7cd3a { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor' } +C3L-02661.RNA-Seq.genomic.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 e0eda260-cf83-4cd4-8eee-56a839bf4712.rna_seq.genomic.gdc_realn.bam 8358143794 BAM genomic harmonized CPTAC3 c2bb8f7e-81f4-492b-b7d8-ce50d82c63e2 abfc5489050812e2c5a6118a1c30c851 { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02661.RNA-Seq.genomic.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 45369480-8c9e-4fbd-871f-7f6b4e0cd682.rna_seq.genomic.gdc_realn.bam 10032728459 BAM genomic harmonized CPTAC3 fef2b70d-253f-4ce4-87dc-5af30c291f37 52cf89c46810ccd1e3967e4d98a89511 { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor' } +C3L-02661.RNA-Seq.R1_L004.A C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 190201_UNC31-K00269_0190_BH3LFKBBXY_CTTGTA_S13_L004_R1_001.fastq.gz 3818022004 FASTQ R1_L004 unaligned CPTAC3 29105d2e-da1a-4b01-a43d-978652b480da 87e1ab539f999af58880ed7e5f57d6a7 { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02661.RNA-Seq.R1_L007.T C3L-02661 LUAD RNA-Seq tumor CPT0192380009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L007_R1_001.fastq.gz 4594708120 FASTQ R1_L007 unaligned CPTAC3 8bf8131a-1bfd-420a-a617-29cf7cd5595a 2a741b496fed6995b6756f39cb32c08d { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02661.RNA-Seq.R2_L004.A C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 190201_UNC31-K00269_0190_BH3LFKBBXY_CTTGTA_S13_L004_R2_001.fastq.gz 4231112363 FASTQ R2_L004 unaligned CPTAC3 0a73c3fd-b91a-4933-b213-bcd787861324 d3086a1baba82d0f1b172fad585ae046 { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-02661.RNA-Seq.R2_L007.T C3L-02661 LUAD RNA-Seq tumor CPT0192380009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L007_R2_001.fastq.gz 5042475468 FASTQ R2_L007 unaligned CPTAC3 dd066b3b-d5c8-45c4-a854-221d47dae8f2 751de8299d1dc0f23312ccf958108889 { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02661.RNA-Seq.transcriptome.A.hg38 C3L-02661 LUAD RNA-Seq tissue_normal CPT0192430009 e0eda260-cf83-4cd4-8eee-56a839bf4712.rna_seq.transcriptome.gdc_realn.bam 9543528959 BAM transcriptome harmonized CPTAC3 ec4edf51-d90f-43de-b521-ddb99f233076 a58b0ca83ffdc075ca397677ef3ed00c { 'aliquot_tag': 'ALQ_2281c1ee', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02661.RNA-Seq.transcriptome.T.hg38 C3L-02661 LUAD RNA-Seq tumor CPT0192380009 45369480-8c9e-4fbd-871f-7f6b4e0cd682.rna_seq.transcriptome.gdc_realn.bam 12057220734 BAM transcriptome harmonized CPTAC3 0bc59df5-71c7-4874-8098-27a1263355c2 acfc732e03cefed283ee3e18c5dc8693 { 'aliquot_tag': 'ALQ_4854c047', 'gdc_sample_type': 'Primary Tumor' } C3L-02661.WGS.A C3L-02661 LUAD WGS tissue_normal CPT0192430006 CPT0192430006.WholeGenome.RP-1303.bam 64125734112 BAM aligned CPTAC3 d3ba9ba3-46e6-4bec-a731-6f5df4ac3761 47c726dd3058731c5d9d023af34c0369 { 'aliquot_tag': 'ALQ_b23edc7f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02661.WGS.A.hg38 C3L-02661 LUAD WGS tissue_normal CPT0192430006 1fc581d1-064b-4142-805d-4567983c81b8_wgs_gdc_realn.bam 92448623248 BAM harmonized CPTAC3 7355c31a-2f71-43a8-98d8-a228241365de fb3a56e913c59bef85d20588a27d4791 { 'aliquot_tag': 'ALQ_b23edc7f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02661.WGS.N C3L-02661 LUAD WGS blood_normal CPT0192520002 CPT0192520002.WholeGenome.RP-1303.bam 53351426033 BAM aligned CPTAC3 5447f1db-7a65-4c02-a105-8ec5c9ded524 7cdfaa5c341f88ac2decd8d2b46e2805 { 'aliquot_tag': 'ALQ_436fe273', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11765,11 +12542,11 @@ C3L-02662.MethArray.Green.T C3L-02662 GBM Methylation Array tumor CPT0267260007 C3L-02662.MethArray.Red.T C3L-02662 GBM Methylation Array tumor CPT0267260007 204367470124_R01C01_Red.idat 13677882 IDAT Red NA CPTAC3 a2a1c65f-dfd5-4e80-b324-e61a9246ef79 db96241568b6752e83c89baf92c05d84 { 'aliquot_tag': 'ALQ_6915814a', 'gdc_sample_type': 'Primary Tumor' } C3L-02662.miRNA-Seq.T C3L-02662 GBM miRNA-Seq tumor CPT0267260010 200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L001_R1_001.unaln.bam 199751137 BAM unaligned CPTAC3 8928ea06-faf4-403a-960b-44a8c1eb2bf9 ca0f2e8b53be1378be1064f35966981b { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor' } C3L-02662.miRNA-Seq.T.hg38 C3L-02662 GBM miRNA-Seq tumor CPT0267260010 f7cda4c0-bf0f-46f1-8e41-dd38276704d2_mirnaseq_gdc_realn.bam 222751978 BAM harmonized CPTAC3 901bda8c-9af1-4cdc-b9ad-dc3b87519c1c 8565473034ce56ff219f14d7babc860b { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02662.RNA-Seq.chimeric.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 458d85fa-e41d-49b0-a121-9e3636297a77.rna_seq.chimeric.gdc_realn.bam 19908590 BAM chimeric harmonized CPTAC3 984feb91-3c8b-41b8-92a6-94982e81740a 637b1d1bdbc6c9d9c983aa479902ea20 { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02662.RNA-Seq.genomic.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 458d85fa-e41d-49b0-a121-9e3636297a77.rna_seq.genomic.gdc_realn.bam 5822913616 BAM genomic harmonized CPTAC3 41d9a599-bba3-4b21-a55d-7aa4b7d9555e e613a0e840c5dab7aad788345ec541d6 { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02662.RNA-Seq.R1_L006.T C3L-02662 GBM RNA-Seq tumor CPT0267260010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R1_001.fastq.gz 2651283628 FASTQ R1_L006 unaligned CPTAC3 356afdb9-db72-4527-92b6-80619daf6746 d26d68a575049099ea1e7251c56d81ff { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02662.RNA-Seq.R2_L006.T C3L-02662 GBM RNA-Seq tumor CPT0267260010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R2_001.fastq.gz 3036287263 FASTQ R2_L006 unaligned CPTAC3 45e95154-6823-4405-a610-9a42d4bc5f10 af9dca0e728ed9683ff8bceaf129692c { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02662.RNA-Seq.transcriptome.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 458d85fa-e41d-49b0-a121-9e3636297a77.rna_seq.transcriptome.gdc_realn.bam 5972177197 BAM transcriptome harmonized CPTAC3 497f0ad4-86eb-4024-9a56-16bde72b7e70 45ad7c6836b653c189137ccf92a6dca3 { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor' } +C3L-02662.RNA-Seq.chimeric.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 f9c8bc98-be22-40d7-aa90-917a699b2c8a.rna_seq.chimeric.gdc_realn.bam 19895747 BAM chimeric harmonized CPTAC3 4c853ed7-08f4-4596-9418-cc0a1c38d04f 46c6b5e869429c0ddb94dbf3b4ca7a0c { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor' } +C3L-02662.RNA-Seq.genomic.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 f9c8bc98-be22-40d7-aa90-917a699b2c8a.rna_seq.genomic.gdc_realn.bam 5823690031 BAM genomic harmonized CPTAC3 a25b2b99-7128-485e-82b6-9a07c91e6226 9570a75a41a1eea0e9440bb76ba5173b { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor' } +C3L-02662.RNA-Seq.R1_L006.T C3L-02662 GBM RNA-Seq tumor CPT0267260010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R1_001.fastq.gz 2651283628 FASTQ R1_L006 unaligned CPTAC3 356afdb9-db72-4527-92b6-80619daf6746 d26d68a575049099ea1e7251c56d81ff { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02662.RNA-Seq.R2_L006.T C3L-02662 GBM RNA-Seq tumor CPT0267260010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R2_001.fastq.gz 3036287263 FASTQ R2_L006 unaligned CPTAC3 45e95154-6823-4405-a610-9a42d4bc5f10 af9dca0e728ed9683ff8bceaf129692c { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-02662.RNA-Seq.transcriptome.T.hg38 C3L-02662 GBM RNA-Seq tumor CPT0267260010 f9c8bc98-be22-40d7-aa90-917a699b2c8a.rna_seq.transcriptome.gdc_realn.bam 6831316217 BAM transcriptome harmonized CPTAC3 45667f60-dae5-434e-be74-b644d8b705f3 d0505781e8ecf7e66e24d591e0fefd2b { 'aliquot_tag': 'ALQ_ee6a25a8', 'gdc_sample_type': 'Primary Tumor' } C3L-02662.WGS.N C3L-02662 GBM WGS blood_normal CPT0267300002 CPT0267300002.WholeGenome.RP-2158.bam 27090249079 BAM aligned CPTAC3 6cc40b60-9b11-429c-8f10-f679c36a10fc ff6b361feffc7b1144fd26ce74ede696 { 'aliquot_tag': 'ALQ_5d6353c0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02662.WGS.N.hg38 C3L-02662 GBM WGS blood_normal CPT0267300002 ffb389b7-11c3-4f48-acc0-9e3c62e1dbd9_wgs_gdc_realn.bam 81374312262 BAM harmonized CPTAC3 bfb3b98e-daac-48dc-bd69-85c8886a45c5 2a79a68ab2ae20bc1d9410c7c80c18d1 { 'aliquot_tag': 'ALQ_5d6353c0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02662.WGS.T C3L-02662 GBM WGS tumor CPT0267260007 CPT0267260007.WholeGenome.RP-2158.bam 27579170879 BAM aligned CPTAC3 8af676a8-afcb-4679-81a6-934725ebdbdb 3b5ecf88bcf0f0be09c67e0cdbe66c37 { 'aliquot_tag': 'ALQ_6915814a', 'gdc_sample_type': 'Primary Tumor' } @@ -11788,12 +12565,12 @@ C3L-02665.miRNA-Seq.T C3L-02665 LSCC miRNA-Seq tumor CPT0192540010 190130_UNC31- C3L-02665.miRNA-Seq.T.hg38 C3L-02665 LSCC miRNA-Seq tumor CPT0192540010 c3669206-de2a-489e-8606-60d8d967e625_mirnaseq_gdc_realn.bam 183676841 BAM harmonized CPTAC3 aa07d4a2-50b3-49a0-ab53-bf167518672e 3a6907b48e1daf5d809063ba85e37139 { 'aliquot_tag': 'ALQ_3b3a47be', 'gdc_sample_type': 'Primary Tumor' } C3L-02665.RNA-Seq.chimeric.A.hg38 C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 5b103163-e6d2-4887-903a-55fd788ab2d9.rna_seq.chimeric.gdc_realn.bam 107667861 BAM chimeric harmonized CPTAC3 62f80d54-7277-4a9c-8518-4ff7c1bade39 e826b994426c733df64bfb9a7b49afea { 'aliquot_tag': 'ALQ_44d527ed', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02665.RNA-Seq.chimeric.T.hg38 C3L-02665 LSCC RNA-Seq tumor CPT0192540010 cf73151c-d5a5-42e7-bd53-d79ec1306abd.rna_seq.chimeric.gdc_realn.bam 369394684 BAM chimeric harmonized CPTAC3 d98819b6-f7da-4c6d-b272-e8ec3cf81caa fe5184dc2ee653a987ce8d8edd0f56b0 { 'aliquot_tag': 'ALQ_3b3a47be', 'gdc_sample_type': 'Primary Tumor' } -C3L-02665.RNA-Seq.genomic.A.hg38 C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 5b103163-e6d2-4887-903a-55fd788ab2d9.rna_seq.genomic.gdc_realn.bam 10064192624 BAM genomic harmonized CPTAC3 2ee1ac1e-2357-44d8-a68b-904992f7df19 4a88acf55a53540d88aebdb02f78d411 { 'aliquot_tag': 'ALQ_44d527ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02665.RNA-Seq.genomic.T.hg38 C3L-02665 LSCC RNA-Seq tumor CPT0192540010 cf73151c-d5a5-42e7-bd53-d79ec1306abd.rna_seq.genomic.gdc_realn.bam 10779354350 BAM genomic harmonized CPTAC3 8ed4836d-4db2-4790-8db2-9a685acc2df8 67ae7dd5c2b71bdfc865485457eee4ad { 'aliquot_tag': 'ALQ_3b3a47be', 'gdc_sample_type': 'Primary Tumor' } -C3L-02665.RNA-Seq.R1_L005.A C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L005_R1_001.fastq.gz 4523020406 FASTQ R1_L005 unaligned CPTAC3 4f8d52cb-6616-49c1-8335-2b70f90ecbb8 26d0f8155f8f34ad0aa70b7400334103 { 'aliquot_tag': 'ALQ_44d527ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02665.RNA-Seq.R1_L005.T C3L-02665 LSCC RNA-Seq tumor CPT0192540010 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L005_R1_001.fastq.gz 4358670008 FASTQ R1_L005 unaligned CPTAC3 911034e6-d213-4670-aa95-42621a8126b8 e4b3d9ecc4d863180a4dc70780a3d104 { 'aliquot_tag': 'ALQ_3b3a47be', 'gdc_sample_type': 'Primary Tumor' } -C3L-02665.RNA-Seq.R2_L005.A C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L005_R2_001.fastq.gz 5016031121 FASTQ R2_L005 unaligned CPTAC3 33d2a666-0d27-43a9-bbf8-e3c7a27f59ae 7f071415e5e4f91ebda99efdbb6746a0 { 'aliquot_tag': 'ALQ_44d527ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02665.RNA-Seq.R2_L005.T C3L-02665 LSCC RNA-Seq tumor CPT0192540010 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L005_R2_001.fastq.gz 4920994757 FASTQ R2_L005 unaligned CPTAC3 18bf9f8e-1f05-4202-baff-bd878b107a4f acc0806fc3c60c8df549be446e7377a4 { 'aliquot_tag': 'ALQ_3b3a47be', 'gdc_sample_type': 'Primary Tumor' } +C3L-02665.RNA-Seq.genomic.A.hg38 C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 5b103163-e6d2-4887-903a-55fd788ab2d9.rna_seq.genomic.gdc_realn.bam 10064192624 BAM genomic harmonized CPTAC3 d057fab5-89c6-41af-96fc-95b1ff1382aa 4a88acf55a53540d88aebdb02f78d411 { 'aliquot_tag': 'ALQ_44d527ed', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02665.RNA-Seq.genomic.T.hg38 C3L-02665 LSCC RNA-Seq tumor CPT0192540010 cf73151c-d5a5-42e7-bd53-d79ec1306abd.rna_seq.genomic.gdc_realn.bam 10779354350 BAM genomic harmonized CPTAC3 46af26d9-4a1d-40b6-bd74-65326d192f3b 67ae7dd5c2b71bdfc865485457eee4ad { 'aliquot_tag': 'ALQ_3b3a47be', 'gdc_sample_type': 'Primary Tumor' } +C3L-02665.RNA-Seq.R1_L005.A C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L005_R1_001.fastq.gz 4523020406 FASTQ R1_L005 unaligned CPTAC3 4f8d52cb-6616-49c1-8335-2b70f90ecbb8 26d0f8155f8f34ad0aa70b7400334103 { 'aliquot_tag': 'ALQ_44d527ed', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02665.RNA-Seq.R1_L005.T C3L-02665 LSCC RNA-Seq tumor CPT0192540010 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L005_R1_001.fastq.gz 4358670008 FASTQ R1_L005 unaligned CPTAC3 911034e6-d213-4670-aa95-42621a8126b8 e4b3d9ecc4d863180a4dc70780a3d104 { 'aliquot_tag': 'ALQ_3b3a47be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02665.RNA-Seq.R2_L005.A C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L005_R2_001.fastq.gz 5016031121 FASTQ R2_L005 unaligned CPTAC3 33d2a666-0d27-43a9-bbf8-e3c7a27f59ae 7f071415e5e4f91ebda99efdbb6746a0 { 'aliquot_tag': 'ALQ_44d527ed', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02665.RNA-Seq.R2_L005.T C3L-02665 LSCC RNA-Seq tumor CPT0192540010 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L005_R2_001.fastq.gz 4920994757 FASTQ R2_L005 unaligned CPTAC3 18bf9f8e-1f05-4202-baff-bd878b107a4f acc0806fc3c60c8df549be446e7377a4 { 'aliquot_tag': 'ALQ_3b3a47be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-02665.RNA-Seq.transcriptome.A.hg38 C3L-02665 LSCC RNA-Seq tissue_normal CPT0192590007 5b103163-e6d2-4887-903a-55fd788ab2d9.rna_seq.transcriptome.gdc_realn.bam 10282928607 BAM transcriptome harmonized CPTAC3 a2201aaf-712b-4489-9826-a1bb2112c4ce 6e136fe499f60438e7d82146dece46f3 { 'aliquot_tag': 'ALQ_44d527ed', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02665.RNA-Seq.transcriptome.T.hg38 C3L-02665 LSCC RNA-Seq tumor CPT0192540010 cf73151c-d5a5-42e7-bd53-d79ec1306abd.rna_seq.transcriptome.gdc_realn.bam 11801958603 BAM transcriptome harmonized CPTAC3 d0abde78-6492-4a60-8437-7371120db5b3 b8e52956e488531f2ea421d71fe27072 { 'aliquot_tag': 'ALQ_3b3a47be', 'gdc_sample_type': 'Primary Tumor' } C3L-02665.WGS.A C3L-02665 LSCC WGS tissue_normal CPT0192590010 CPT0192590010.WholeGenome.RP-1303.bam 70185282591 BAM aligned CPTAC3 0d5dc11e-646d-479d-a2f1-a40d6f37399b e2a2c0e5d85dcaf9477694b2c1f6d858 { 'aliquot_tag': 'ALQ_c3aa830f', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11818,12 +12595,12 @@ C3L-02669.miRNA-Seq.T C3L-02669 LSCC miRNA-Seq tumor CPT0202350010 190206_UNC31- C3L-02669.miRNA-Seq.T.hg38 C3L-02669 LSCC miRNA-Seq tumor CPT0202350010 e4eb107c-3bb7-4362-a39d-fea6fd382d8f_mirnaseq_gdc_realn.bam 256703933 BAM harmonized CPTAC3 38ace166-d082-47ab-9b83-3e6b96a74934 8f0ba1e781f6382fa947651458910010 { 'aliquot_tag': 'ALQ_f6c1aafd', 'gdc_sample_type': 'Primary Tumor' } C3L-02669.RNA-Seq.chimeric.A.hg38 C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 2e4ed71f-1e70-4845-a1da-907c677a048a.rna_seq.chimeric.gdc_realn.bam 98438137 BAM chimeric harmonized CPTAC3 ea809121-bbab-409b-a028-ef4b409f66e4 545077ad09e72602be03023e8509e366 { 'aliquot_tag': 'ALQ_23241535', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02669.RNA-Seq.chimeric.T.hg38 C3L-02669 LSCC RNA-Seq tumor CPT0202350010 aebe5846-05d4-4037-8148-858043c2c4dc.rna_seq.chimeric.gdc_realn.bam 137340437 BAM chimeric harmonized CPTAC3 79ea1535-2f20-4598-a185-3a743306f311 e8a238b3917ccda67ea7a8a4ffcdece9 { 'aliquot_tag': 'ALQ_f6c1aafd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02669.RNA-Seq.genomic.A.hg38 C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 2e4ed71f-1e70-4845-a1da-907c677a048a.rna_seq.genomic.gdc_realn.bam 8929634265 BAM genomic harmonized CPTAC3 ec8b0a87-5c0f-4cc8-9395-1a90ef603f30 2526019214ecbde8162285170ec795b7 { 'aliquot_tag': 'ALQ_23241535', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02669.RNA-Seq.genomic.T.hg38 C3L-02669 LSCC RNA-Seq tumor CPT0202350010 aebe5846-05d4-4037-8148-858043c2c4dc.rna_seq.genomic.gdc_realn.bam 8644109244 BAM genomic harmonized CPTAC3 19524063-fe5e-4785-9399-99263120c87d bf48fc071604050659f5880ad04e1754 { 'aliquot_tag': 'ALQ_f6c1aafd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02669.RNA-Seq.R1_L007.A C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 190208_UNC32-K00270_0145_AH3VHMBBXY_TGACCA_S24_L007_R1_001.fastq.gz 4199314894 FASTQ R1_L007 unaligned CPTAC3 06be14d7-ed37-40be-8acb-5314fc60c8cf 2f54e62dc9d54e404e8da29571d162ce { 'aliquot_tag': 'ALQ_23241535', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02669.RNA-Seq.R1_L008.T C3L-02669 LSCC RNA-Seq tumor CPT0202350010 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L008_R1_001.fastq.gz 3692403747 FASTQ R1_L008 unaligned CPTAC3 a7850847-6b0d-4716-8bd9-e3a82e347f22 87ce1acf96100a0eb20435857f2b23be { 'aliquot_tag': 'ALQ_f6c1aafd', 'gdc_sample_type': 'Primary Tumor' } -C3L-02669.RNA-Seq.R2_L007.A C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 190208_UNC32-K00270_0145_AH3VHMBBXY_TGACCA_S24_L007_R2_001.fastq.gz 4388810999 FASTQ R2_L007 unaligned CPTAC3 c0abdf9c-0eef-48a2-a405-b8d7aa71adc5 a3857ab67151d031e6b8359f768f5bcf { 'aliquot_tag': 'ALQ_23241535', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02669.RNA-Seq.R2_L008.T C3L-02669 LSCC RNA-Seq tumor CPT0202350010 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L008_R2_001.fastq.gz 3950076857 FASTQ R2_L008 unaligned CPTAC3 4107e3b6-5695-4113-a3a4-e365c6b34f4e dcdb935846083b9fc97854d0b538b4e1 { 'aliquot_tag': 'ALQ_f6c1aafd', 'gdc_sample_type': 'Primary Tumor' } +C3L-02669.RNA-Seq.genomic.A.hg38 C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 2e4ed71f-1e70-4845-a1da-907c677a048a.rna_seq.genomic.gdc_realn.bam 8929634265 BAM genomic harmonized CPTAC3 7d3e5d8e-d6d9-457b-bca7-bfe177b63b80 2526019214ecbde8162285170ec795b7 { 'aliquot_tag': 'ALQ_23241535', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02669.RNA-Seq.genomic.T.hg38 C3L-02669 LSCC RNA-Seq tumor CPT0202350010 aebe5846-05d4-4037-8148-858043c2c4dc.rna_seq.genomic.gdc_realn.bam 8644109244 BAM genomic harmonized CPTAC3 595b010b-4e15-4cb6-9944-fc291883d03a bf48fc071604050659f5880ad04e1754 { 'aliquot_tag': 'ALQ_f6c1aafd', 'gdc_sample_type': 'Primary Tumor' } +C3L-02669.RNA-Seq.R1_L007.A C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 190208_UNC32-K00270_0145_AH3VHMBBXY_TGACCA_S24_L007_R1_001.fastq.gz 4199314894 FASTQ R1_L007 unaligned CPTAC3 06be14d7-ed37-40be-8acb-5314fc60c8cf 2f54e62dc9d54e404e8da29571d162ce { 'aliquot_tag': 'ALQ_23241535', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-02669.RNA-Seq.R1_L008.T C3L-02669 LSCC RNA-Seq tumor CPT0202350010 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L008_R1_001.fastq.gz 3692403747 FASTQ R1_L008 unaligned CPTAC3 a7850847-6b0d-4716-8bd9-e3a82e347f22 87ce1acf96100a0eb20435857f2b23be { 'aliquot_tag': 'ALQ_f6c1aafd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02669.RNA-Seq.R2_L007.A C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 190208_UNC32-K00270_0145_AH3VHMBBXY_TGACCA_S24_L007_R2_001.fastq.gz 4388810999 FASTQ R2_L007 unaligned CPTAC3 c0abdf9c-0eef-48a2-a405-b8d7aa71adc5 a3857ab67151d031e6b8359f768f5bcf { 'aliquot_tag': 'ALQ_23241535', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-02669.RNA-Seq.R2_L008.T C3L-02669 LSCC RNA-Seq tumor CPT0202350010 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L008_R2_001.fastq.gz 3950076857 FASTQ R2_L008 unaligned CPTAC3 4107e3b6-5695-4113-a3a4-e365c6b34f4e dcdb935846083b9fc97854d0b538b4e1 { 'aliquot_tag': 'ALQ_f6c1aafd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-02669.RNA-Seq.transcriptome.A.hg38 C3L-02669 LSCC RNA-Seq tissue_normal CPT0202400010 2e4ed71f-1e70-4845-a1da-907c677a048a.rna_seq.transcriptome.gdc_realn.bam 9947310323 BAM transcriptome harmonized CPTAC3 2c5958d4-8d88-4057-908e-512e30c0de77 1efa9d903666395e455d9fad2a689f27 { 'aliquot_tag': 'ALQ_23241535', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02669.RNA-Seq.transcriptome.T.hg38 C3L-02669 LSCC RNA-Seq tumor CPT0202350010 aebe5846-05d4-4037-8148-858043c2c4dc.rna_seq.transcriptome.gdc_realn.bam 9483324334 BAM transcriptome harmonized CPTAC3 bc3e3333-8f1a-4aa8-9171-4bd2a659351e a60bf5f42a9228c6b63a9b476e864be7 { 'aliquot_tag': 'ALQ_f6c1aafd', 'gdc_sample_type': 'Primary Tumor' } C3L-02669.WGS.A C3L-02669 LSCC WGS tissue_normal CPT0202400007 CPT0202400007.WholeGenome.RP-1303.bam 59737920421 BAM aligned CPTAC3 e6c535c6-784b-4d7d-a4ea-f0ff59fd0404 fd2bc82dae3e5975da91744070be26e4 { 'aliquot_tag': 'ALQ_a45bb1d7', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -11843,9 +12620,9 @@ C3L-02701.MethArray.Red.T C3L-02701 PDA Methylation Array tumor CPT0227930007 20 C3L-02701.miRNA-Seq.T C3L-02701 PDA miRNA-Seq tumor CPT0227930010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTATAC_S15_L004_R1_001.unaln.bam 280665592 BAM unaligned CPTAC3 df6d47e2-755b-4f99-94c8-8683551f6450 bd3aef874043e654b37873855b757d01 { 'aliquot_tag': 'ALQ_c80754e1', 'gdc_sample_type': 'Primary Tumor' } C3L-02701.miRNA-Seq.T.hg38 C3L-02701 PDA miRNA-Seq tumor CPT0227930010 036f56d3-7235-4027-96ca-c0d58460c6c5_mirnaseq_gdc_realn.bam 317852009 BAM harmonized CPTAC3 38e08549-c188-4e0c-9a65-badeaf009a46 2a3184f411496ef83515af73430e98b1 { 'aliquot_tag': 'ALQ_c80754e1', 'gdc_sample_type': 'Primary Tumor' } C3L-02701.RNA-Seq.chimeric.T.hg38 C3L-02701 PDA RNA-Seq tumor CPT0227930010 acc80cde-6e30-4e3c-9ed7-4ef8e295bf8c.rna_seq.chimeric.gdc_realn.bam 32368993 BAM chimeric harmonized CPTAC3 a2024df8-7483-44a0-aad5-b1187ad78152 db843f066536ec0849df029edd2f6a40 { 'aliquot_tag': 'ALQ_c80754e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02701.RNA-Seq.genomic.T.hg38 C3L-02701 PDA RNA-Seq tumor CPT0227930010 acc80cde-6e30-4e3c-9ed7-4ef8e295bf8c.rna_seq.genomic.gdc_realn.bam 8682494302 BAM genomic harmonized CPTAC3 bb6516c0-adb0-455e-a8ab-b3039e5357e0 bc4c0814d1d0247e15b5486b48394ce6 { 'aliquot_tag': 'ALQ_c80754e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02701.RNA-Seq.R1_L003.T C3L-02701 PDA RNA-Seq tumor CPT0227930010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTCACCAA-CTAGGCAA_S12_L003_R1_001.fastq.gz 3946761587 FASTQ R1_L003 unaligned CPTAC3 c8d5f272-d5fa-4f82-9b12-5ca458271e35 58074ffb9934347a8151d52e9e8339df { 'aliquot_tag': 'ALQ_c80754e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02701.RNA-Seq.R2_L003.T C3L-02701 PDA RNA-Seq tumor CPT0227930010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTCACCAA-CTAGGCAA_S12_L003_R2_001.fastq.gz 4490638753 FASTQ R2_L003 unaligned CPTAC3 4e44f521-6100-40b3-b70f-8031e8d022c9 9e6c973c5a2dd504f7af50a5cc572c1d { 'aliquot_tag': 'ALQ_c80754e1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02701.RNA-Seq.genomic.T.hg38 C3L-02701 PDA RNA-Seq tumor CPT0227930010 acc80cde-6e30-4e3c-9ed7-4ef8e295bf8c.rna_seq.genomic.gdc_realn.bam 8682494302 BAM genomic harmonized CPTAC3 08f0d47b-2153-41de-9d73-cd0ae5e70a80 bc4c0814d1d0247e15b5486b48394ce6 { 'aliquot_tag': 'ALQ_c80754e1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02701.RNA-Seq.R1_L003.T C3L-02701 PDA RNA-Seq tumor CPT0227930010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTCACCAA-CTAGGCAA_S12_L003_R1_001.fastq.gz 3946761587 FASTQ R1_L003 unaligned CPTAC3 c8d5f272-d5fa-4f82-9b12-5ca458271e35 58074ffb9934347a8151d52e9e8339df { 'aliquot_tag': 'ALQ_c80754e1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02701.RNA-Seq.R2_L003.T C3L-02701 PDA RNA-Seq tumor CPT0227930010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTCACCAA-CTAGGCAA_S12_L003_R2_001.fastq.gz 4490638753 FASTQ R2_L003 unaligned CPTAC3 4e44f521-6100-40b3-b70f-8031e8d022c9 9e6c973c5a2dd504f7af50a5cc572c1d { 'aliquot_tag': 'ALQ_c80754e1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-02701.RNA-Seq.transcriptome.T.hg38 C3L-02701 PDA RNA-Seq tumor CPT0227930010 acc80cde-6e30-4e3c-9ed7-4ef8e295bf8c.rna_seq.transcriptome.gdc_realn.bam 12568322953 BAM transcriptome harmonized CPTAC3 ee303213-9fd6-4c15-81de-e1752ea2ef76 d785ecc5b316e7d0cdbfc5d4c61b4aed { 'aliquot_tag': 'ALQ_c80754e1', 'gdc_sample_type': 'Primary Tumor' } C3L-02701.Targeted.T C3L-02701 PDA Targeted Sequencing tumor CPT0227930007 CPT0227930007.CustomSelection.RP-1303.PDO-18786.bam 5841968173 BAM aligned CPTAC3 5c8ad51e-9364-48df-b88e-a77e2f3c9406 022834f2ac5361166c10a289ff367032 { 'aliquot_tag': 'ALQ_4f78f003', 'gdc_sample_type': 'Primary Tumor' } C3L-02701.Targeted.T.hg38 C3L-02701 PDA Targeted Sequencing tumor CPT0227930007 b094badf-1417-4766-aa99-0d8ef35fcf39_targetedsequencing_gdc_realn.bam 8321610766 BAM harmonized CPTAC3 741d63bd-f399-47a3-9cd8-2db1898f75ba 90ca096c73ad751ef2eb45e4e33dc35b { 'aliquot_tag': 'ALQ_4f78f003', 'gdc_sample_type': 'Primary Tumor' } @@ -11862,9 +12639,9 @@ C3L-02704.MethArray.Red.T C3L-02704 GBM Methylation Array tumor CPT0189750007 20 C3L-02704.miRNA-Seq.T C3L-02704 GBM miRNA-Seq tumor CPT0189750010 181219_UNC31-K00269_0173_BHYGJJBBXX_CATGGC_S33_L004_R1_001.unaln.bam 211477747 BAM unaligned CPTAC3 7fd57ea2-72de-43d6-89ec-c291b4fffee0 f0f4ffecc9cea04cec418e57925aeb73 { 'aliquot_tag': 'ALQ_853f9b61', 'gdc_sample_type': 'Primary Tumor' } C3L-02704.miRNA-Seq.T.hg38 C3L-02704 GBM miRNA-Seq tumor CPT0189750010 696abcce-ec1a-4b95-9f94-f199f2c0565d_mirnaseq_gdc_realn.bam 237401097 BAM harmonized CPTAC3 ae19c6e5-80c0-43b1-9660-af87307297c7 d840e77e0afc5e9f3913d3367d5d6720 { 'aliquot_tag': 'ALQ_853f9b61', 'gdc_sample_type': 'Primary Tumor' } C3L-02704.RNA-Seq.chimeric.T.hg38 C3L-02704 GBM RNA-Seq tumor CPT0189750010 0ab80f6a-8139-42a9-886c-e8eb5cc9de88.rna_seq.chimeric.gdc_realn.bam 171377954 BAM chimeric harmonized CPTAC3 ba00c3f2-c144-46c3-a21a-cf7dc9d764a1 d798617a766de3134d0cb38e9ca5ceaf { 'aliquot_tag': 'ALQ_853f9b61', 'gdc_sample_type': 'Primary Tumor' } -C3L-02704.RNA-Seq.genomic.T.hg38 C3L-02704 GBM RNA-Seq tumor CPT0189750010 0ab80f6a-8139-42a9-886c-e8eb5cc9de88.rna_seq.genomic.gdc_realn.bam 6588485698 BAM genomic harmonized CPTAC3 b349b8cf-1c53-4d91-9cfd-4ca87a1f041b c3218fbc084fea439c2d961458de3790 { 'aliquot_tag': 'ALQ_853f9b61', 'gdc_sample_type': 'Primary Tumor' } -C3L-02704.RNA-Seq.R1_L002.T C3L-02704 GBM RNA-Seq tumor CPT0189750010 181207_UNC32-K00270_0136_AH2N7LBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 2928245025 FASTQ R1_L002 unaligned CPTAC3 a3d39428-6703-4d2b-b5d7-246b40fbf69a 0f3371677f8ca81ce849b32f455bb069 { 'aliquot_tag': 'ALQ_853f9b61', 'gdc_sample_type': 'Primary Tumor' } -C3L-02704.RNA-Seq.R2_L002.T C3L-02704 GBM RNA-Seq tumor CPT0189750010 181207_UNC32-K00270_0136_AH2N7LBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 3086328739 FASTQ R2_L002 unaligned CPTAC3 ba57ec8b-f0e7-4a29-be8c-069fe59c0721 4d546473833b5a186cdf55c17300ca98 { 'aliquot_tag': 'ALQ_853f9b61', 'gdc_sample_type': 'Primary Tumor' } +C3L-02704.RNA-Seq.genomic.T.hg38 C3L-02704 GBM RNA-Seq tumor CPT0189750010 0ab80f6a-8139-42a9-886c-e8eb5cc9de88.rna_seq.genomic.gdc_realn.bam 6588485698 BAM genomic harmonized CPTAC3 e7489018-3b6f-432e-a459-b7048f451b05 c3218fbc084fea439c2d961458de3790 { 'aliquot_tag': 'ALQ_853f9b61', 'gdc_sample_type': 'Primary Tumor' } +C3L-02704.RNA-Seq.R1_L002.T C3L-02704 GBM RNA-Seq tumor CPT0189750010 181207_UNC32-K00270_0136_AH2N7LBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 2928245025 FASTQ R1_L002 unaligned CPTAC3 a3d39428-6703-4d2b-b5d7-246b40fbf69a 0f3371677f8ca81ce849b32f455bb069 { 'aliquot_tag': 'ALQ_853f9b61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02704.RNA-Seq.R2_L002.T C3L-02704 GBM RNA-Seq tumor CPT0189750010 181207_UNC32-K00270_0136_AH2N7LBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 3086328739 FASTQ R2_L002 unaligned CPTAC3 ba57ec8b-f0e7-4a29-be8c-069fe59c0721 4d546473833b5a186cdf55c17300ca98 { 'aliquot_tag': 'ALQ_853f9b61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-02704.RNA-Seq.transcriptome.T.hg38 C3L-02704 GBM RNA-Seq tumor CPT0189750010 0ab80f6a-8139-42a9-886c-e8eb5cc9de88.rna_seq.transcriptome.gdc_realn.bam 7596220066 BAM transcriptome harmonized CPTAC3 b7c787ab-97fb-404d-884d-f65bbca82576 47b48d8b09d35f8cc7f226167ceea3dd { 'aliquot_tag': 'ALQ_853f9b61', 'gdc_sample_type': 'Primary Tumor' } C3L-02704.WGS.N C3L-02704 GBM WGS blood_normal CPT0190660002 CPT0190660002.WholeGenome.RP-1303.bam 71105654131 BAM aligned CPTAC3 88268abe-703d-4b4d-bd40-fa3a225b9c64 537cb4f5a6b6e0c920867c187cd903cd { 'aliquot_tag': 'ALQ_a7e42734', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02704.WGS.N.hg38 C3L-02704 GBM WGS blood_normal CPT0190660002 1c6e61d2-277c-4f6a-be33-abc32bc1ab3e_wgs_gdc_realn.bam 101670983024 BAM harmonized CPTAC3 7c528b0b-1718-40ef-9a3d-a5380193191c 7e450e5f5d22ec1ed4967c9f9e479f48 { 'aliquot_tag': 'ALQ_a7e42734', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11880,11 +12657,11 @@ C3L-02705.miRNA-Seq.T C3L-02705 GBM miRNA-Seq tumor CPT0189650010 181219_UNC31-K C3L-02705.miRNA-Seq.T.hg38 C3L-02705 GBM miRNA-Seq tumor CPT0189650010 fbc5104f-754e-4779-8fb4-d63c9092ad3d_mirnaseq_gdc_realn.bam 212856196 BAM harmonized CPTAC3 eac73477-bb32-46a9-8694-a580aa5f40b5 ce3e31c236a49c7e485bee068179d121 { 'aliquot_tag': 'ALQ_4e6348c4', 'gdc_sample_type': 'Primary Tumor' } C3L-02705.RNA-Seq.chimeric.T.hg38 C3L-02705 GBM RNA-Seq tumor CPT0189650010 cb6d1cb9-0b4b-4938-902b-39d02b07faf7.rna_seq.chimeric.gdc_realn.bam 100506614 BAM chimeric harmonized CPTAC3 c1d9428e-21d9-4155-bf3d-f7fc2c1f2ddb b2bb3b94d38fd599a2631621725c2e14 { 'aliquot_tag': 'ALQ_4e6348c4', 'gdc_sample_type': 'Primary Tumor' } C3L-02705.RNA-Seq.genomic.T.hg38 C3L-02705 GBM RNA-Seq tumor CPT0189650010 cb6d1cb9-0b4b-4938-902b-39d02b07faf7.rna_seq.genomic.gdc_realn.bam 7711026633 BAM genomic harmonized CPTAC3 b6d06af1-6378-4942-bb43-2a33e1808a39 c88cd6a3c57d90ab79bfb1126dbdd51f { 'aliquot_tag': 'ALQ_4e6348c4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02705.RNA-Seq.R1_L003.T C3L-02705 GBM RNA-Seq tumor CPT0189650010 181218_UNC32-K00270_0138_AH32HMBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3323782301 FASTQ R1_L003 unaligned CPTAC3 31ad97f9-8f0a-4939-9b27-aeecc345925d fdb618addcb5c7d16260e6059d1cecc4 { 'aliquot_tag': 'ALQ_4e6348c4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02705.RNA-Seq.R2_L003.T C3L-02705 GBM RNA-Seq tumor CPT0189650010 181218_UNC32-K00270_0138_AH32HMBBXY_GATCAG_S9_L003_R2_001.fastq.gz 3599944937 FASTQ R2_L003 unaligned CPTAC3 593ce048-3cf6-4a27-8c02-e81b2b48d95f edfa38aabdcbe976b181ef2ca8e404a1 { 'aliquot_tag': 'ALQ_4e6348c4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02705.RNA-Seq.R1_L003.T C3L-02705 GBM RNA-Seq tumor CPT0189650010 181218_UNC32-K00270_0138_AH32HMBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3323782301 FASTQ R1_L003 unaligned CPTAC3 31ad97f9-8f0a-4939-9b27-aeecc345925d fdb618addcb5c7d16260e6059d1cecc4 { 'aliquot_tag': 'ALQ_4e6348c4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02705.RNA-Seq.R2_L003.T C3L-02705 GBM RNA-Seq tumor CPT0189650010 181218_UNC32-K00270_0138_AH32HMBBXY_GATCAG_S9_L003_R2_001.fastq.gz 3599944937 FASTQ R2_L003 unaligned CPTAC3 593ce048-3cf6-4a27-8c02-e81b2b48d95f edfa38aabdcbe976b181ef2ca8e404a1 { 'aliquot_tag': 'ALQ_4e6348c4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-02705.RNA-Seq.transcriptome.T.hg38 C3L-02705 GBM RNA-Seq tumor CPT0189650010 cb6d1cb9-0b4b-4938-902b-39d02b07faf7.rna_seq.transcriptome.gdc_realn.bam 8175750568 BAM transcriptome harmonized CPTAC3 9cb576c9-3a85-476a-966b-04c5cd655d6c dfc1b932382d6bccec2b558d005d51e7 { 'aliquot_tag': 'ALQ_4e6348c4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02705.scRNA-Seq.R1_L003.T C3L-02705 GBM scRNA-Seq tumor CPT0189650015 20200616_WUSTL_CPT0189650015_CGTTAATC-GCCACGCT-TTACTCAG-AAGGGTGA_S3_L003_R1_001.fastq.gz 10955017630 FASTQ R1_L003 unaligned CPTAC3 1f4d56f2-61d3-4c05-a994-a1db1fdc5323 d9e00f0c966dd4c2969aa4defa82b200 { 'aliquot_tag': 'ALQ_3e09bc4b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02705.scRNA-Seq.R2_L003.T C3L-02705 GBM scRNA-Seq tumor CPT0189650015 20200616_WUSTL_CPT0189650015_CGTTAATC-GCCACGCT-TTACTCAG-AAGGGTGA_S3_L003_R2_001.fastq.gz 25217192545 FASTQ R2_L003 unaligned CPTAC3 4ef75921-f1d4-427e-88f2-2fd9e86fba92 8714fda1daa56a390c20e745dcdf5987 { 'aliquot_tag': 'ALQ_3e09bc4b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02705.scRNA-Seq.R1_L003.T C3L-02705 GBM scRNA-Seq tumor CPT0189650015 20200616_WUSTL_CPT0189650015_CGTTAATC-GCCACGCT-TTACTCAG-AAGGGTGA_S3_L003_R1_001.fastq.gz 10955017630 FASTQ R1_L003 unaligned CPTAC3 1f4d56f2-61d3-4c05-a994-a1db1fdc5323 d9e00f0c966dd4c2969aa4defa82b200 { 'aliquot_tag': 'ALQ_3e09bc4b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02705.scRNA-Seq.R2_L003.T C3L-02705 GBM scRNA-Seq tumor CPT0189650015 20200616_WUSTL_CPT0189650015_CGTTAATC-GCCACGCT-TTACTCAG-AAGGGTGA_S3_L003_R2_001.fastq.gz 25217192545 FASTQ R2_L003 unaligned CPTAC3 4ef75921-f1d4-427e-88f2-2fd9e86fba92 8714fda1daa56a390c20e745dcdf5987 { 'aliquot_tag': 'ALQ_3e09bc4b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-02705.scRNA-Seq.T.hg38 C3L-02705 GBM scRNA-Seq tumor CPT0189650015 possorted_genome_bam.bam 29846950870 BAM harmonized CPTAC3 6e9347b8-7198-44e1-a4b9-2262ebf107b6 0a4091d16f4eae4f8d96aa76e9509025 { 'aliquot_tag': 'ALQ_3e09bc4b', 'gdc_sample_type': 'Primary Tumor' } C3L-02705.WGS.N C3L-02705 GBM WGS blood_normal CPT0190640002 CPT0190640002.WholeGenome.RP-1303.bam 55336589099 BAM aligned CPTAC3 6218ca2a-3ec4-4ef6-83a3-ae00c9d83d12 e5149cb9803dd4cc33bb0c89b4d38afb { 'aliquot_tag': 'ALQ_dd247454', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02705.WGS.N.hg38 C3L-02705 GBM WGS blood_normal CPT0190640002 a820c7e7-180a-47e8-ad00-12e32236bbdf_wgs_gdc_realn.bam 80337375536 BAM harmonized CPTAC3 54197100-227c-4760-9df9-5c9f6e7df598 e6bde5807083cf3c0c2a1b14c76511c0 { 'aliquot_tag': 'ALQ_dd247454', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11898,11 +12675,11 @@ C3L-02706.MethArray.Green.T C3L-02706 GBM Methylation Array tumor CPT0216870007 C3L-02706.MethArray.Red.T C3L-02706 GBM Methylation Array tumor CPT0216870007 203219670141_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 7c8ebcc3-759a-4b62-a9ed-10bc4968db35 4f055c1cf6d1c4b20d8413a601555f9f { 'aliquot_tag': 'ALQ_595c8931', 'gdc_sample_type': 'Primary Tumor' } C3L-02706.miRNA-Seq.T C3L-02706 GBM miRNA-Seq tumor CPT0216870014 190206_UNC31-K00269_0191_AH2WY5BBXY_GTCCGC_S31_L002_R1_001.unaln.bam 207830996 BAM unaligned CPTAC3 e6335b8b-2292-4316-955b-51c476263285 5565b88dc8c24f2cdfecbaf6db314adf { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor' } C3L-02706.miRNA-Seq.T.hg38 C3L-02706 GBM miRNA-Seq tumor CPT0216870014 f65e7d30-8882-4c0d-b0ba-7934041d7d6d_mirnaseq_gdc_realn.bam 231905166 BAM harmonized CPTAC3 8b1d07c7-7b2e-4bc0-828d-087ac09628a9 16c70f9ef5a2ba219af17fd88c90ad16 { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-02706.RNA-Seq.chimeric.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 c86f856d-8285-497c-b0f9-5b557e2e531d.rna_seq.chimeric.gdc_realn.bam 52768960 BAM chimeric harmonized CPTAC3 f848cf73-fbf8-44a0-b5c7-76a18979237d 9a4a0049a67ec232d71afb43ff06c2bd { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-02706.RNA-Seq.genomic.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 c86f856d-8285-497c-b0f9-5b557e2e531d.rna_seq.genomic.gdc_realn.bam 8006692886 BAM genomic harmonized CPTAC3 bd250ef3-0c96-4d96-8367-1ea07e4da1a4 22a4a2712e1a9b6d43d117c240e0dacf { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-02706.RNA-Seq.R1_L001.T C3L-02706 GBM RNA-Seq tumor CPT0216870014 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L001_R1_001.fastq.gz 3577817850 FASTQ R1_L001 unaligned CPTAC3 89b695ac-d4e9-4449-9e46-18dd3b95dd2f 23be2f34c0466462df51a6acd20e6320 { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-02706.RNA-Seq.R2_L001.T C3L-02706 GBM RNA-Seq tumor CPT0216870014 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L001_R2_001.fastq.gz 3658901575 FASTQ R2_L001 unaligned CPTAC3 4b7ebdc9-1b68-4257-b5d8-6c53874971c7 2b84d54e44322af43fa3fa0962a6d11e { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-02706.RNA-Seq.transcriptome.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 c86f856d-8285-497c-b0f9-5b557e2e531d.rna_seq.transcriptome.gdc_realn.bam 6360253696 BAM transcriptome harmonized CPTAC3 ad499124-34df-46fc-9ca3-5db03c524166 ddfbb2d4f6cd21413f77833288e5b791 { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-02706.RNA-Seq.chimeric.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 ca18102d-2584-4bf2-a1e2-5d3278ca0c0e.rna_seq.chimeric.gdc_realn.bam 52745807 BAM chimeric harmonized CPTAC3 1cdebccb-7586-40fd-bbd8-cfc5fdf29ed4 350dc8f006e5fa661b7538667e5325c8 { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-02706.RNA-Seq.genomic.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 ca18102d-2584-4bf2-a1e2-5d3278ca0c0e.rna_seq.genomic.gdc_realn.bam 8007299304 BAM genomic harmonized CPTAC3 f559ffca-c104-4236-8bf2-c7d77d93e2b8 0cb6ab0587db3c38c1e7227ba23bcd6c { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-02706.RNA-Seq.R1_L001.T C3L-02706 GBM RNA-Seq tumor CPT0216870014 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L001_R1_001.fastq.gz 3577817850 FASTQ R1_L001 unaligned CPTAC3 89b695ac-d4e9-4449-9e46-18dd3b95dd2f 23be2f34c0466462df51a6acd20e6320 { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02706.RNA-Seq.R2_L001.T C3L-02706 GBM RNA-Seq tumor CPT0216870014 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L001_R2_001.fastq.gz 3658901575 FASTQ R2_L001 unaligned CPTAC3 4b7ebdc9-1b68-4257-b5d8-6c53874971c7 2b84d54e44322af43fa3fa0962a6d11e { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02706.RNA-Seq.transcriptome.T.hg38 C3L-02706 GBM RNA-Seq tumor CPT0216870014 ca18102d-2584-4bf2-a1e2-5d3278ca0c0e.rna_seq.transcriptome.gdc_realn.bam 7331508021 BAM transcriptome harmonized CPTAC3 1d23c67b-5a08-4136-921f-659331c35c1d bc19bb19595c2bab342432bee64fc648 { 'aliquot_tag': 'ALQ_d94ee9ca', 'gdc_sample_type': 'Primary Tumor' } C3L-02706.WGS.N C3L-02706 GBM WGS blood_normal CPT0217920002 CPT0217920002.WholeGenome.RP-1303.bam 65117153902 BAM aligned CPTAC3 87c10938-fdb6-45f2-939b-78aae1375233 6176b9d5d2b55733ce3bf0f36692aa9c { 'aliquot_tag': 'ALQ_8cfd2adf', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02706.WGS.N.hg38 C3L-02706 GBM WGS blood_normal CPT0217920002 755e756f-026d-41db-b701-7dee13a7f30a_wgs_gdc_realn.bam 95185893534 BAM harmonized CPTAC3 5864910a-3263-423a-ad31-5d2638cac474 ec005c5e3855c6873c14f5b138f51d21 { 'aliquot_tag': 'ALQ_8cfd2adf', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02706.WGS.T C3L-02706 GBM WGS tumor CPT0216870007 CPT0216870007.WholeGenome.RP-1303.bam 54922463277 BAM aligned CPTAC3 544f870a-65e7-4c2b-9da8-4aaee81fbf07 a73c8cc696ca05f8a48bd5392df18a23 { 'aliquot_tag': 'ALQ_595c8931', 'gdc_sample_type': 'Primary Tumor' } @@ -11916,9 +12693,9 @@ C3L-02707.MethArray.Red.T C3L-02707 GBM Methylation Array tumor CPT0189850007 20 C3L-02707.miRNA-Seq.T C3L-02707 GBM miRNA-Seq tumor CPT0189850010 181219_UNC31-K00269_0173_BHYGJJBBXX_CATTTT_S34_L004_R1_001.unaln.bam 270683244 BAM unaligned CPTAC3 e1acdb9b-3516-463e-9343-8f188333637f fd5ac622642d1b1096ffd23d640ac2f9 { 'aliquot_tag': 'ALQ_746929b4', 'gdc_sample_type': 'Primary Tumor' } C3L-02707.miRNA-Seq.T.hg38 C3L-02707 GBM miRNA-Seq tumor CPT0189850010 c33d7302-616a-4893-b241-0599dfc4911e_mirnaseq_gdc_realn.bam 299226557 BAM harmonized CPTAC3 e9fce34c-8c44-4d5b-a8f8-019dc25f3156 106507ee0385205e61956ec814501889 { 'aliquot_tag': 'ALQ_746929b4', 'gdc_sample_type': 'Primary Tumor' } C3L-02707.RNA-Seq.chimeric.T.hg38 C3L-02707 GBM RNA-Seq tumor CPT0189850010 04486900-5d91-4ec8-8387-a3b80f8dc5f0.rna_seq.chimeric.gdc_realn.bam 152530336 BAM chimeric harmonized CPTAC3 a78c60ca-9224-4cc8-8bc2-1079a1ce7145 e32cad24ac65608750f62465ffd0291d { 'aliquot_tag': 'ALQ_746929b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02707.RNA-Seq.genomic.T.hg38 C3L-02707 GBM RNA-Seq tumor CPT0189850010 04486900-5d91-4ec8-8387-a3b80f8dc5f0.rna_seq.genomic.gdc_realn.bam 7013383356 BAM genomic harmonized CPTAC3 0ff1122f-7a2f-47b6-9aad-e7cdf28003d3 d52a2d6768329febb267d4de525870fe { 'aliquot_tag': 'ALQ_746929b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02707.RNA-Seq.R1_L002.T C3L-02707 GBM RNA-Seq tumor CPT0189850010 181207_UNC32-K00270_0136_AH2N7LBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 3065849813 FASTQ R1_L002 unaligned CPTAC3 86aa2222-5a98-4edf-a4a1-4b1b2cebc0d8 5726edd296410b30b4aef46f4c672b4b { 'aliquot_tag': 'ALQ_746929b4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02707.RNA-Seq.R2_L002.T C3L-02707 GBM RNA-Seq tumor CPT0189850010 181207_UNC32-K00270_0136_AH2N7LBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 3352987257 FASTQ R2_L002 unaligned CPTAC3 5c3ce60e-8c59-48b3-b7bf-64d8d7316fbc 457d8b52a062dc96b70c6fbbcbea10f7 { 'aliquot_tag': 'ALQ_746929b4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02707.RNA-Seq.genomic.T.hg38 C3L-02707 GBM RNA-Seq tumor CPT0189850010 04486900-5d91-4ec8-8387-a3b80f8dc5f0.rna_seq.genomic.gdc_realn.bam 7013383356 BAM genomic harmonized CPTAC3 a8031f1b-c0ea-492f-809e-cc3c4e334bfa d52a2d6768329febb267d4de525870fe { 'aliquot_tag': 'ALQ_746929b4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02707.RNA-Seq.R1_L002.T C3L-02707 GBM RNA-Seq tumor CPT0189850010 181207_UNC32-K00270_0136_AH2N7LBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 3065849813 FASTQ R1_L002 unaligned CPTAC3 86aa2222-5a98-4edf-a4a1-4b1b2cebc0d8 5726edd296410b30b4aef46f4c672b4b { 'aliquot_tag': 'ALQ_746929b4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02707.RNA-Seq.R2_L002.T C3L-02707 GBM RNA-Seq tumor CPT0189850010 181207_UNC32-K00270_0136_AH2N7LBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 3352987257 FASTQ R2_L002 unaligned CPTAC3 5c3ce60e-8c59-48b3-b7bf-64d8d7316fbc 457d8b52a062dc96b70c6fbbcbea10f7 { 'aliquot_tag': 'ALQ_746929b4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-02707.RNA-Seq.transcriptome.T.hg38 C3L-02707 GBM RNA-Seq tumor CPT0189850010 04486900-5d91-4ec8-8387-a3b80f8dc5f0.rna_seq.transcriptome.gdc_realn.bam 6521456471 BAM transcriptome harmonized CPTAC3 9a304f9e-486c-4324-93ca-9a661a0716d7 15300fedad6b1b5fd38dd56d034fa752 { 'aliquot_tag': 'ALQ_746929b4', 'gdc_sample_type': 'Primary Tumor' } C3L-02707.WGS.N C3L-02707 GBM WGS blood_normal CPT0190680002 CPT0190680002.WholeGenome.RP-1303.bam 60440234641 BAM aligned CPTAC3 e0aca9d3-1392-4671-baa1-d81c3cacbaf1 7976e5fe04f81f09e0745d5f049363e6 { 'aliquot_tag': 'ALQ_18d49955', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02707.WGS.N.hg38 C3L-02707 GBM WGS blood_normal CPT0190680002 5d4b375a-b83e-417f-b1f4-c4abe77a2ace_wgs_gdc_realn.bam 88170424738 BAM harmonized CPTAC3 7baf3007-3a7a-4baf-86c0-95e2232f4291 b47f68ae3327f610b158251030e5ad83 { 'aliquot_tag': 'ALQ_18d49955', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11934,8 +12711,8 @@ C3L-02708.miRNA-Seq.T C3L-02708 GBM miRNA-Seq tumor CPT0189570010 181219_UNC31-K C3L-02708.miRNA-Seq.T.hg38 C3L-02708 GBM miRNA-Seq tumor CPT0189570010 ad0b2549-d1d8-46e9-9fd6-d29cd66f0fbc_mirnaseq_gdc_realn.bam 291342722 BAM harmonized CPTAC3 f8d59b60-c8eb-4bb9-886e-1bff21d99acc 781fd5abb36d818c3a512fc53b0f831e { 'aliquot_tag': 'ALQ_b237690a', 'gdc_sample_type': 'Primary Tumor' } C3L-02708.RNA-Seq.chimeric.T.hg38 C3L-02708 GBM RNA-Seq tumor CPT0189570010 99747246-678d-4e27-92e3-2ac12b29af87.rna_seq.chimeric.gdc_realn.bam 150249585 BAM chimeric harmonized CPTAC3 a92542b3-585f-40b5-99f4-f9d5dbd19925 f9fd8299236ca7c645c2bd4b31c20f5c { 'aliquot_tag': 'ALQ_b237690a', 'gdc_sample_type': 'Primary Tumor' } C3L-02708.RNA-Seq.genomic.T.hg38 C3L-02708 GBM RNA-Seq tumor CPT0189570010 99747246-678d-4e27-92e3-2ac12b29af87.rna_seq.genomic.gdc_realn.bam 9410543807 BAM genomic harmonized CPTAC3 bd948e8a-5eba-4d6e-9f08-459a3018885b 4287f6ec014031c51d178ddf38ef9743 { 'aliquot_tag': 'ALQ_b237690a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02708.RNA-Seq.R1_L001.T C3L-02708 GBM RNA-Seq tumor CPT0189570010 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTTGA_S4_L001_R1_001.fastq.gz 4345690373 FASTQ R1_L001 unaligned CPTAC3 096c41c4-c85b-4617-9334-4d1c4501e59d 5b12d99b2854d54fe0dde719150b873e { 'aliquot_tag': 'ALQ_b237690a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02708.RNA-Seq.R2_L001.T C3L-02708 GBM RNA-Seq tumor CPT0189570010 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTTGA_S4_L001_R2_001.fastq.gz 4718587824 FASTQ R2_L001 unaligned CPTAC3 5cd8f085-f849-4d31-88f5-dca6ffae2523 5f39f63249d3e7531edb4e26af75da24 { 'aliquot_tag': 'ALQ_b237690a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02708.RNA-Seq.R1_L001.T C3L-02708 GBM RNA-Seq tumor CPT0189570010 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTTGA_S4_L001_R1_001.fastq.gz 4345690373 FASTQ R1_L001 unaligned CPTAC3 096c41c4-c85b-4617-9334-4d1c4501e59d 5b12d99b2854d54fe0dde719150b873e { 'aliquot_tag': 'ALQ_b237690a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02708.RNA-Seq.R2_L001.T C3L-02708 GBM RNA-Seq tumor CPT0189570010 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTTGA_S4_L001_R2_001.fastq.gz 4718587824 FASTQ R2_L001 unaligned CPTAC3 5cd8f085-f849-4d31-88f5-dca6ffae2523 5f39f63249d3e7531edb4e26af75da24 { 'aliquot_tag': 'ALQ_b237690a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-02708.RNA-Seq.transcriptome.T.hg38 C3L-02708 GBM RNA-Seq tumor CPT0189570010 99747246-678d-4e27-92e3-2ac12b29af87.rna_seq.transcriptome.gdc_realn.bam 9055149563 BAM transcriptome harmonized CPTAC3 b469cde6-b694-4189-8521-689a87bb4cbd 1b53fd74f1318fbddf509d328a200e02 { 'aliquot_tag': 'ALQ_b237690a', 'gdc_sample_type': 'Primary Tumor' } C3L-02708.WGS.N C3L-02708 GBM WGS blood_normal CPT0190620002 CPT0190620002.WholeGenome.RP-1303.bam 65812188063 BAM aligned CPTAC3 a92fa05a-311a-4552-8b0b-e0f34bf47cfa 56640a4948195f252730a8569d0ef9b7 { 'aliquot_tag': 'ALQ_526481f4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02708.WGS.N.hg38 C3L-02708 GBM WGS blood_normal CPT0190620002 2425979c-83fa-4c6b-a510-2efbadb018aa_wgs_gdc_realn.bam 95071768833 BAM harmonized CPTAC3 f2c47d0e-a53e-49e9-b3ed-f22d8804ca29 aaef3f53fd7e66ba4ca80a1a1306edb4 { 'aliquot_tag': 'ALQ_526481f4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -11949,13 +12726,16 @@ C3L-02741.MethArray.Green.T C3L-02741 UCEC Methylation Array tumor CPT0188190007 C3L-02741.MethArray.Red.T C3L-02741 UCEC Methylation Array tumor CPT0188190007 203561620080_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e706c7c4-bb3f-48ff-8181-2f0bc4200f2a 740d7a13e62b56aa5d1c798b2c94cb47 { 'aliquot_tag': 'ALQ_b79e3a2b', 'gdc_sample_type': 'Primary Tumor' } C3L-02741.miRNA-Seq.T C3L-02741 UCEC miRNA-Seq tumor CPT0188190010 190508_UNC31-K00269_0215_BH7FYKBBXY_CCGTCC_S16_L001_R1_001.unaln.bam 225865193 BAM unaligned CPTAC3 8092be15-424d-4917-a945-f6313ccaad94 ed4fa4041f4409a0b2460ffb76a2e5a9 { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor' } C3L-02741.miRNA-Seq.T.hg38 C3L-02741 UCEC miRNA-Seq tumor CPT0188190010 9f28dbdd-a300-4ef8-ab40-68fc37732e45_mirnaseq_gdc_realn.bam 252812275 BAM harmonized CPTAC3 af96f1da-85c7-4b8b-b528-5346035f4c50 2e83fb8095eefb73b3b904ff8483a603 { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor' } -C3L-02741.RNA-Seq.chimeric.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 a82c01e0-ce1f-4812-bd3f-91cdfa93bbac.rna_seq.chimeric.gdc_realn.bam 29543460 BAM chimeric harmonized CPTAC3 15709b4b-b530-4a78-87ae-d7620d91d307 26412872f025e28f2b55e77247a2609f { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor' } -C3L-02741.RNA-Seq.genomic.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 a82c01e0-ce1f-4812-bd3f-91cdfa93bbac.rna_seq.genomic.gdc_realn.bam 7272067109 BAM genomic harmonized CPTAC3 c5771f1f-3353-487c-8b1e-2ad337e627e4 529b6c42f0269243a96b288f4a5c1b00 { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor' } -C3L-02741.RNA-Seq.R1_L005.T C3L-02741 UCEC RNA-Seq tumor CPT0188190010 190522_UNC31-K00269_0217_AH7F5MBBXY_AATCCGGA-CTACAGTT_S34_L005_R1_001.fastq.gz 3407301989 FASTQ R1_L005 unaligned CPTAC3 8b6df366-157d-44c2-ac01-ce3f4dfc59ce c7f1b8511a2cf604e3e373b9b8b936e6 { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor' } -C3L-02741.RNA-Seq.R1_.T C3L-02741 UCEC RNA-Seq tumor CPT0348210001 20210729_P3_C9_WB7988-Plate3_S33_R1_001.fastq.gz 7289862853 FASTQ R1_ unaligned CPTAC3 fea63445-8062-4de8-b135-3bc8abb87038 7e580313070a291a3a6599ede9ea2a9f { 'aliquot_tag': 'ALQ_91409bb8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02741.RNA-Seq.R2_L005.T C3L-02741 UCEC RNA-Seq tumor CPT0188190010 190522_UNC31-K00269_0217_AH7F5MBBXY_AATCCGGA-CTACAGTT_S34_L005_R2_001.fastq.gz 3972708041 FASTQ R2_L005 unaligned CPTAC3 a7be553d-7271-4bc6-a69b-e3895f8d5429 9289a4ebe0f2a0fd631e961ae6a65bdc { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor' } -C3L-02741.RNA-Seq.R2_.T C3L-02741 UCEC RNA-Seq tumor CPT0348210001 20210729_P3_C9_WB7988-Plate3_S33_R2_001.fastq.gz 7675178438 FASTQ R2_ unaligned CPTAC3 2a0d4a66-5975-440b-97bf-4fb195a27398 cc2f0c8dacce68033780641558050a05 { 'aliquot_tag': 'ALQ_91409bb8', 'gdc_sample_type': 'Primary Tumor' } -C3L-02741.RNA-Seq.transcriptome.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 a82c01e0-ce1f-4812-bd3f-91cdfa93bbac.rna_seq.transcriptome.gdc_realn.bam 8356309071 BAM transcriptome harmonized CPTAC3 7b28d33b-0883-468f-b5f9-0d4226eb232b 2c308c2e8189012c77aa35f0e376755e { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor' } +C3L-02741.RNA-Seq.chimeric.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 3357dbf8-598d-4ce8-9c02-029c22031934.rna_seq.chimeric.gdc_realn.bam 29523375 BAM chimeric harmonized CPTAC3 7ee718d8-b1f7-45c3-8268-41a468947e0d c6899a40b02011ce7127c60d923a34a4 { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor' } +C3L-02741.RNA-Seq.chimeric.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0348210001 0358c601-430c-4df2-b87d-21d17f60df58.rna_seq.chimeric.gdc_realn.bam 213315749 BAM chimeric harmonized CPTAC3 f060a413-b9fa-4711-857a-2c10e68490ae eb9a78d8661bdbc8670c9673aae57070 { 'aliquot_tag': 'ALQ_91409bb8', 'gdc_sample_type': 'Primary Tumor' } +C3L-02741.RNA-Seq.genomic.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 3357dbf8-598d-4ce8-9c02-029c22031934.rna_seq.genomic.gdc_realn.bam 7273084969 BAM genomic harmonized CPTAC3 9d546ed1-c3d4-4849-9ab8-eb580364b7df 8d84638dbd14acca743b7439bcb350cf { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor' } +C3L-02741.RNA-Seq.genomic.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0348210001 0358c601-430c-4df2-b87d-21d17f60df58.rna_seq.genomic.gdc_realn.bam 11481403880 BAM genomic harmonized CPTAC3 b816c035-18d8-488a-86dd-8addbe39416d ba9098e2bbdac442adff64bf02555fa3 { 'aliquot_tag': 'ALQ_91409bb8', 'gdc_sample_type': 'Primary Tumor' } +C3L-02741.RNA-Seq.R1_L005.T C3L-02741 UCEC RNA-Seq tumor CPT0188190010 190522_UNC31-K00269_0217_AH7F5MBBXY_AATCCGGA-CTACAGTT_S34_L005_R1_001.fastq.gz 3407301989 FASTQ R1_L005 unaligned CPTAC3 8b6df366-157d-44c2-ac01-ce3f4dfc59ce c7f1b8511a2cf604e3e373b9b8b936e6 { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02741.RNA-Seq.R2_L005.T C3L-02741 UCEC RNA-Seq tumor CPT0188190010 190522_UNC31-K00269_0217_AH7F5MBBXY_AATCCGGA-CTACAGTT_S34_L005_R2_001.fastq.gz 3972708041 FASTQ R2_L005 unaligned CPTAC3 a7be553d-7271-4bc6-a69b-e3895f8d5429 9289a4ebe0f2a0fd631e961ae6a65bdc { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-02741.RNA-Seq.T C3L-02741 UCEC RNA-Seq tumor CPT0348210001 20210729_P3_C9_WB7988-Plate3_S33_R1_001.fastq.gz 7289862853 FASTQ unaligned CPTAC3 fea63445-8062-4de8-b135-3bc8abb87038 7e580313070a291a3a6599ede9ea2a9f +C3L-02741.RNA-Seq.T C3L-02741 UCEC RNA-Seq tumor CPT0348210001 20210729_P3_C9_WB7988-Plate3_S33_R2_001.fastq.gz 7675178438 FASTQ unaligned CPTAC3 2a0d4a66-5975-440b-97bf-4fb195a27398 cc2f0c8dacce68033780641558050a05 +C3L-02741.RNA-Seq.transcriptome.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0188190010 3357dbf8-598d-4ce8-9c02-029c22031934.rna_seq.transcriptome.gdc_realn.bam 9740494405 BAM transcriptome harmonized CPTAC3 cacd4563-c7c2-4281-9a4d-adffe6f73776 3de9af634a19a4d96a558c6a31df75cd { 'aliquot_tag': 'ALQ_30e19ec9', 'gdc_sample_type': 'Primary Tumor' } +C3L-02741.RNA-Seq.transcriptome.T.hg38 C3L-02741 UCEC RNA-Seq tumor CPT0348210001 0358c601-430c-4df2-b87d-21d17f60df58.rna_seq.transcriptome.gdc_realn.bam 7345399590 BAM transcriptome harmonized CPTAC3 b81a4a21-f077-41c7-ba62-0c856ee892b8 8c603c081f55f3d7cb8ed187b096e853 { 'aliquot_tag': 'ALQ_91409bb8', 'gdc_sample_type': 'Primary Tumor' } C3L-02741.WGS.N C3L-02741 UCEC WGS blood_normal CPT0183110002 CPT0183110002.WholeGenome.RP-1303.bam 76225307001 BAM aligned CPTAC3 1efe2de1-d220-4bf0-beda-1842241c9976 dd5d51c215144cb39a8c767a5cd9d2f6 { 'aliquot_tag': 'ALQ_f583d19f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02741.WGS.N.hg38 C3L-02741 UCEC WGS blood_normal CPT0183110002 96b9e5f8-e9be-4538-9034-958d5afb4cdf_wgs_gdc_realn.bam 109810096415 BAM harmonized CPTAC3 dfbb4a41-0997-4e29-bee9-d16b65319f8e c9b354c0eaaba1b88c27361338826931 { 'aliquot_tag': 'ALQ_f583d19f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02741.WGS.T C3L-02741 UCEC WGS tumor CPT0188190007 CPT0188190007.WholeGenome.RP-1303.bam 62435661938 BAM aligned CPTAC3 5af840eb-f364-4dd8-9dc5-e2157d27e359 ea33154c6e8fd1cd414a79e78fab5516 { 'aliquot_tag': 'ALQ_b79e3a2b', 'gdc_sample_type': 'Primary Tumor' } @@ -11968,13 +12748,16 @@ C3L-02744.MethArray.Green.T C3L-02744 UCEC Methylation Array tumor CPT0188370006 C3L-02744.MethArray.Red.T C3L-02744 UCEC Methylation Array tumor CPT0188370006 203561620153_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 6d538141-8982-4b5c-95d8-be6f87b135e4 c369ef3a45831e7866bb4dd16e3e7c3e { 'aliquot_tag': 'ALQ_326115d7', 'gdc_sample_type': 'Primary Tumor' } C3L-02744.miRNA-Seq.T C3L-02744 UCEC miRNA-Seq tumor CPT0188370009 190828_UNC32-K00270_0200_BH7GVJBBXY_AGTTCC_S171_L008_R1_001.unaln.bam 205074391 BAM unaligned CPTAC3 c461f89e-644e-4ae4-8c7a-15eeec91eb50 61706947269e71eb2007cc6a8dc9474d { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor' } C3L-02744.miRNA-Seq.T.hg38 C3L-02744 UCEC miRNA-Seq tumor CPT0188370009 4c8ae1fe-2866-4610-961b-61010b380e04_mirnaseq_gdc_realn.bam 228967805 BAM harmonized CPTAC3 344ef38f-b6d8-4144-a2f3-64c0bc4370a5 1e5965238e3bc757273b46515b2af0d8 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor' } -C3L-02744.RNA-Seq.chimeric.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 ee040358-d64b-4e36-9318-e230a841cdc2.rna_seq.chimeric.gdc_realn.bam 285987158 BAM chimeric harmonized CPTAC3 b3fdfc5b-7cc5-4bb9-9f6c-259f8a9484f3 e695ec25bd0e18e228a2349c173e68d8 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor' } -C3L-02744.RNA-Seq.genomic.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 ee040358-d64b-4e36-9318-e230a841cdc2.rna_seq.genomic.gdc_realn.bam 7949181181 BAM genomic harmonized CPTAC3 47ba8f1b-bee4-4a33-adef-f6cf47841bb6 b2bcbc418518c71b74cc4ee4675c8e87 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor' } -C3L-02744.RNA-Seq.R1_L006.T C3L-02744 UCEC RNA-Seq tumor CPT0188370009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAAGGTCA-TGTCGTAG_S22_L006_R1_001.fastq.gz 3092692456 FASTQ R1_L006 unaligned CPTAC3 31af8f62-4e41-44be-be45-2fad56f86ba9 b0a00f4ba392f69b20ea934462aae7a5 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor' } -C3L-02744.RNA-Seq.R1_.T C3L-02744 UCEC RNA-Seq tumor CPT0348250001 20210723_P2_F8_WB7988-plate2_S68_R1_001.fastq.gz 16112707998 FASTQ R1_ unaligned CPTAC3 f5742c28-83bc-4fe0-82bf-4b90b9550cb0 78d40828a5bd1c5ba9b93f9ac68d6b79 { 'aliquot_tag': 'ALQ_64c03d78', 'gdc_sample_type': 'Primary Tumor' } -C3L-02744.RNA-Seq.R2_L006.T C3L-02744 UCEC RNA-Seq tumor CPT0188370009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAAGGTCA-TGTCGTAG_S22_L006_R2_001.fastq.gz 3162279933 FASTQ R2_L006 unaligned CPTAC3 1adfd980-889e-4035-b2ef-c072f11c5127 bb983d9bcc04261d01dfe94ec9460918 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor' } -C3L-02744.RNA-Seq.R2_.T C3L-02744 UCEC RNA-Seq tumor CPT0348250001 20210723_P2_F8_WB7988-plate2_S68_R2_001.fastq.gz 16564949198 FASTQ R2_ unaligned CPTAC3 e4b97fe5-5b5a-403c-8710-e7c2ebdac55d 99942fe17899337c3fb1f63523aced99 { 'aliquot_tag': 'ALQ_64c03d78', 'gdc_sample_type': 'Primary Tumor' } -C3L-02744.RNA-Seq.transcriptome.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 ee040358-d64b-4e36-9318-e230a841cdc2.rna_seq.transcriptome.gdc_realn.bam 5325531449 BAM transcriptome harmonized CPTAC3 f00105c7-ad35-488f-81c8-d624e259a515 ff9ba044f6f8ed7c44592f78a76cc2b0 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor' } +C3L-02744.RNA-Seq.chimeric.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 d49ef4f8-ebc1-4e9d-bf32-f22860921c7a.rna_seq.chimeric.gdc_realn.bam 285970366 BAM chimeric harmonized CPTAC3 098d3de3-c649-4f76-9a23-050664622e0c d2cabddfbc21d85ffb9aed1be90a56f8 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor' } +C3L-02744.RNA-Seq.chimeric.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0348250001 6a326ceb-d92b-4f50-bcac-dc2b61e5987e.rna_seq.chimeric.gdc_realn.bam 560174952 BAM chimeric harmonized CPTAC3 59b9fc95-c654-4223-90fa-7d11a1c4455a 39edb9806cfe6b651da146812c0111ca { 'aliquot_tag': 'ALQ_64c03d78', 'gdc_sample_type': 'Primary Tumor' } +C3L-02744.RNA-Seq.genomic.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 d49ef4f8-ebc1-4e9d-bf32-f22860921c7a.rna_seq.genomic.gdc_realn.bam 7949785699 BAM genomic harmonized CPTAC3 a973b9ac-15fe-4e62-a9b8-2feb18d61574 c24e963f8c8e0547f8b9d40f1c7f5c51 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor' } +C3L-02744.RNA-Seq.genomic.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0348250001 6a326ceb-d92b-4f50-bcac-dc2b61e5987e.rna_seq.genomic.gdc_realn.bam 25442290919 BAM genomic harmonized CPTAC3 7e13d88d-603d-49fe-a135-25a4216595da b1f6da7dbf0623d3340c9a849162d449 { 'aliquot_tag': 'ALQ_64c03d78', 'gdc_sample_type': 'Primary Tumor' } +C3L-02744.RNA-Seq.R1_L006.T C3L-02744 UCEC RNA-Seq tumor CPT0188370009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAAGGTCA-TGTCGTAG_S22_L006_R1_001.fastq.gz 3092692456 FASTQ R1_L006 unaligned CPTAC3 31af8f62-4e41-44be-be45-2fad56f86ba9 b0a00f4ba392f69b20ea934462aae7a5 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02744.RNA-Seq.R2_L006.T C3L-02744 UCEC RNA-Seq tumor CPT0188370009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAAGGTCA-TGTCGTAG_S22_L006_R2_001.fastq.gz 3162279933 FASTQ R2_L006 unaligned CPTAC3 1adfd980-889e-4035-b2ef-c072f11c5127 bb983d9bcc04261d01dfe94ec9460918 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-02744.RNA-Seq.T C3L-02744 UCEC RNA-Seq tumor CPT0348250001 20210723_P2_F8_WB7988-plate2_S68_R1_001.fastq.gz 16112707998 FASTQ unaligned CPTAC3 f5742c28-83bc-4fe0-82bf-4b90b9550cb0 78d40828a5bd1c5ba9b93f9ac68d6b79 +C3L-02744.RNA-Seq.T C3L-02744 UCEC RNA-Seq tumor CPT0348250001 20210723_P2_F8_WB7988-plate2_S68_R2_001.fastq.gz 16564949198 FASTQ unaligned CPTAC3 e4b97fe5-5b5a-403c-8710-e7c2ebdac55d 99942fe17899337c3fb1f63523aced99 +C3L-02744.RNA-Seq.transcriptome.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0188370009 d49ef4f8-ebc1-4e9d-bf32-f22860921c7a.rna_seq.transcriptome.gdc_realn.bam 5995278336 BAM transcriptome harmonized CPTAC3 b20bac08-9940-4163-9645-13adecf7e2e9 1cf25337d32317364013941ddbaca9c1 { 'aliquot_tag': 'ALQ_a2de0846', 'gdc_sample_type': 'Primary Tumor' } +C3L-02744.RNA-Seq.transcriptome.T.hg38 C3L-02744 UCEC RNA-Seq tumor CPT0348250001 6a326ceb-d92b-4f50-bcac-dc2b61e5987e.rna_seq.transcriptome.gdc_realn.bam 17548626833 BAM transcriptome harmonized CPTAC3 2f3b103d-0cf0-499c-a8f3-bf0565618424 95df804807d2f7fa7e2aebe562aada06 { 'aliquot_tag': 'ALQ_64c03d78', 'gdc_sample_type': 'Primary Tumor' } C3L-02744.WGS.N C3L-02744 UCEC WGS blood_normal CPT0183150002 CPT0183150002.WholeGenome.RP-1303.bam 72024140799 BAM aligned CPTAC3 84c6d232-b96d-41de-9a9a-df3f77aba50f 8d489160d5472e89a90af32b50c41fc0 { 'aliquot_tag': 'ALQ_3775f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02744.WGS.N.hg38 C3L-02744 UCEC WGS blood_normal CPT0183150002 70b87a14-c5ca-4d59-b9cc-1ef4034dc2bf_wgs_gdc_realn.bam 105233001134 BAM harmonized CPTAC3 7d94c451-3960-4452-8ed9-07819a66b5cc 21b639c833d42e248b0a5f6922f1f1a2 { 'aliquot_tag': 'ALQ_3775f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02744.WGS.T C3L-02744 UCEC WGS tumor CPT0188370006 CPT0188370006.WholeGenome.RP-1303.bam 85146710241 BAM aligned CPTAC3 b09baca7-b177-45c3-90c0-bb8d80839cd1 d354d62ebad7ef1eb769d5eaa3f13c2b { 'aliquot_tag': 'ALQ_326115d7', 'gdc_sample_type': 'Primary Tumor' } @@ -11987,13 +12770,16 @@ C3L-02746.MethArray.Green.T C3L-02746 UCEC Methylation Array tumor CPT0188270007 C3L-02746.MethArray.Red.T C3L-02746 UCEC Methylation Array tumor CPT0188270007 203561450084_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 b4414504-caef-41f4-b697-e1ff2e2d7f4d 8b5ad472d4f82f506b1a6439491b7858 { 'aliquot_tag': 'ALQ_8e3af6e4', 'gdc_sample_type': 'Primary Tumor' } C3L-02746.miRNA-Seq.T C3L-02746 UCEC miRNA-Seq tumor CPT0188270010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTAGAG_S17_L003_R1_001.unaln.bam 162413020 BAM unaligned CPTAC3 d3186121-2c90-4324-86a6-b74722165323 d2e69aa136c14f6299269ec977ddfabd { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor' } C3L-02746.miRNA-Seq.T.hg38 C3L-02746 UCEC miRNA-Seq tumor CPT0188270010 f0a79064-c834-4444-a7f5-aefa169e1d1e_mirnaseq_gdc_realn.bam 182383310 BAM harmonized CPTAC3 c0418d48-fb0f-4f46-83eb-2304bd804373 a9e7e920e8edff83dd9d44c084961e0f { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor' } -C3L-02746.RNA-Seq.chimeric.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 2c2769ef-bcc5-4b70-a8a3-6f3b55c39cfc.rna_seq.chimeric.gdc_realn.bam 53972506 BAM chimeric harmonized CPTAC3 c13527f2-ad0d-4ad4-998c-9a1fb869c22e 8ee5f1a773374edbb3328242a2a217cb { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor' } -C3L-02746.RNA-Seq.genomic.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 2c2769ef-bcc5-4b70-a8a3-6f3b55c39cfc.rna_seq.genomic.gdc_realn.bam 11249092267 BAM genomic harmonized CPTAC3 9af80e2d-b0a6-4905-bf5f-c71a20544a0b 2bf4eb6d66f0077909b6666b61bf6c28 { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor' } -C3L-02746.RNA-Seq.R1_L006.T C3L-02746 UCEC RNA-Seq tumor CPT0188270010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACACTAAG-ATCCATAT_S23_L006_R1_001.fastq.gz 5591113902 FASTQ R1_L006 unaligned CPTAC3 1a05a9f1-2da4-4d3a-b21c-2a1d06004c87 ee65a98cd2c8ce61fce3595c04889531 { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor' } -C3L-02746.RNA-Seq.R1_.T C3L-02746 UCEC RNA-Seq tumor CPT0348300001 20210714_P1_H8_WB7988_plate1_S91_R1_001.fastq.gz 7172855919 FASTQ R1_ unaligned CPTAC3 718534c6-57a1-4f75-bbd4-2e76a6958f36 45dbcdf8261643e84adf4aedc41b5c92 { 'aliquot_tag': 'ALQ_677c61ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-02746.RNA-Seq.R2_L006.T C3L-02746 UCEC RNA-Seq tumor CPT0188270010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACACTAAG-ATCCATAT_S23_L006_R2_001.fastq.gz 6294101184 FASTQ R2_L006 unaligned CPTAC3 548e3dc3-22cf-4cf2-86d9-f0d14680ca4a 969bc79dd104d582f7631be23b886bc6 { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor' } -C3L-02746.RNA-Seq.R2_.T C3L-02746 UCEC RNA-Seq tumor CPT0348300001 20210714_P1_H8_WB7988_plate1_S91_R2_001.fastq.gz 7436698089 FASTQ R2_ unaligned CPTAC3 caca8140-9ce4-47f3-947d-f988c94218ff 60b50738e788e488ed7761bc8f82fe34 { 'aliquot_tag': 'ALQ_677c61ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-02746.RNA-Seq.transcriptome.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 2c2769ef-bcc5-4b70-a8a3-6f3b55c39cfc.rna_seq.transcriptome.gdc_realn.bam 13347756478 BAM transcriptome harmonized CPTAC3 c165e702-807d-4d52-8c1f-f70d2951de7b 925b4aa37ba99cdc01e52668e9c7e64a { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor' } +C3L-02746.RNA-Seq.chimeric.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 a246edb0-9ae9-4c6f-8282-ee02eb013fca.rna_seq.chimeric.gdc_realn.bam 53945773 BAM chimeric harmonized CPTAC3 22389747-ba18-4af7-94ca-b8f63fd16a0c db33a1702f8a11dc7ae92c7a49047f59 { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor' } +C3L-02746.RNA-Seq.chimeric.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0348300001 1502aea4-84ac-4b53-8e19-a6f0ac930afa.rna_seq.chimeric.gdc_realn.bam 223539657 BAM chimeric harmonized CPTAC3 1e3fdd48-fabb-4f36-b2c3-10f6717a962a 2b2484dd17ad0b72deb92c1b536f0754 { 'aliquot_tag': 'ALQ_677c61ad', 'gdc_sample_type': 'Primary Tumor' } +C3L-02746.RNA-Seq.genomic.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 a246edb0-9ae9-4c6f-8282-ee02eb013fca.rna_seq.genomic.gdc_realn.bam 11251199938 BAM genomic harmonized CPTAC3 32f4436b-06a9-43f9-b06f-07228017e7b1 7ff2259d2334754d221f6fbcb185cf8d { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor' } +C3L-02746.RNA-Seq.genomic.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0348300001 1502aea4-84ac-4b53-8e19-a6f0ac930afa.rna_seq.genomic.gdc_realn.bam 11073087979 BAM genomic harmonized CPTAC3 35c8a2b1-06f3-4822-8f11-4d6580dbc8a5 afaeedc628880bee338b5abdb0633d5f { 'aliquot_tag': 'ALQ_677c61ad', 'gdc_sample_type': 'Primary Tumor' } +C3L-02746.RNA-Seq.R1_L006.T C3L-02746 UCEC RNA-Seq tumor CPT0188270010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACACTAAG-ATCCATAT_S23_L006_R1_001.fastq.gz 5591113902 FASTQ R1_L006 unaligned CPTAC3 1a05a9f1-2da4-4d3a-b21c-2a1d06004c87 ee65a98cd2c8ce61fce3595c04889531 { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02746.RNA-Seq.R2_L006.T C3L-02746 UCEC RNA-Seq tumor CPT0188270010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACACTAAG-ATCCATAT_S23_L006_R2_001.fastq.gz 6294101184 FASTQ R2_L006 unaligned CPTAC3 548e3dc3-22cf-4cf2-86d9-f0d14680ca4a 969bc79dd104d582f7631be23b886bc6 { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-02746.RNA-Seq.T C3L-02746 UCEC RNA-Seq tumor CPT0348300001 20210714_P1_H8_WB7988_plate1_S91_R1_001.fastq.gz 7172855919 FASTQ unaligned CPTAC3 718534c6-57a1-4f75-bbd4-2e76a6958f36 45dbcdf8261643e84adf4aedc41b5c92 +C3L-02746.RNA-Seq.T C3L-02746 UCEC RNA-Seq tumor CPT0348300001 20210714_P1_H8_WB7988_plate1_S91_R2_001.fastq.gz 7436698089 FASTQ unaligned CPTAC3 caca8140-9ce4-47f3-947d-f988c94218ff 60b50738e788e488ed7761bc8f82fe34 +C3L-02746.RNA-Seq.transcriptome.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0188270010 a246edb0-9ae9-4c6f-8282-ee02eb013fca.rna_seq.transcriptome.gdc_realn.bam 15373701340 BAM transcriptome harmonized CPTAC3 758fc5d2-f544-4923-950e-c9fda4174694 a1f4ecf19b7d4fc7d48cce7d95ef133a { 'aliquot_tag': 'ALQ_9455206', 'gdc_sample_type': 'Primary Tumor' } +C3L-02746.RNA-Seq.transcriptome.T.hg38 C3L-02746 UCEC RNA-Seq tumor CPT0348300001 1502aea4-84ac-4b53-8e19-a6f0ac930afa.rna_seq.transcriptome.gdc_realn.bam 7031934207 BAM transcriptome harmonized CPTAC3 02fd8de2-6cc4-42cd-bcda-3b603b3b3f36 3b22221419fc19953b564673ee7cb895 { 'aliquot_tag': 'ALQ_677c61ad', 'gdc_sample_type': 'Primary Tumor' } C3L-02746.WGS.N C3L-02746 UCEC WGS blood_normal CPT0183130002 CPT0183130002.WholeGenome.RP-1303.bam 84112668708 BAM aligned CPTAC3 210bb094-1a0c-4c84-9781-57d8f34c2e9d e503968c37c16be2f934b2985e614dea { 'aliquot_tag': 'ALQ_8f4382ff', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02746.WGS.N.hg38 C3L-02746 UCEC WGS blood_normal CPT0183130002 fa737772-42d4-4fb7-95ed-008187ef10a8_wgs_gdc_realn.bam 121451252317 BAM harmonized CPTAC3 4e1197b9-5d2f-41fe-8abe-e1592b3398ab a8c6063606976fd0f1adf598f1055be8 { 'aliquot_tag': 'ALQ_8f4382ff', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02746.WGS.T C3L-02746 UCEC WGS tumor CPT0188270007 CPT0188270007.WholeGenome.RP-1303.bam 70182947819 BAM aligned CPTAC3 43c5e9d5-c037-48e2-a7d7-673cf3c3d195 61f03481c49d2c4fbb0617ef3e7ab745 { 'aliquot_tag': 'ALQ_8e3af6e4', 'gdc_sample_type': 'Primary Tumor' } @@ -12006,13 +12792,16 @@ C3L-02747.MethArray.Green.T C3L-02747 UCEC Methylation Array tumor CPT0188480007 C3L-02747.MethArray.Red.T C3L-02747 UCEC Methylation Array tumor CPT0188480007 203561620012_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 6b8b3d3e-cbe7-4a8a-b7cb-b725ed6bf9f9 d5cb2381a41595c9960e0d2560f202ee { 'aliquot_tag': 'ALQ_da338228', 'gdc_sample_type': 'Primary Tumor' } C3L-02747.miRNA-Seq.T C3L-02747 UCEC miRNA-Seq tumor CPT0188480010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTCCGC_S18_L003_R1_001.unaln.bam 270670384 BAM unaligned CPTAC3 1dbb6198-f082-4b0b-afb7-047098299025 7e3bf3c8df1cd87d7143ff88e3be1734 { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor' } C3L-02747.miRNA-Seq.T.hg38 C3L-02747 UCEC miRNA-Seq tumor CPT0188480010 6db032da-bfa4-4470-94de-67291b215048_mirnaseq_gdc_realn.bam 302749315 BAM harmonized CPTAC3 440b3726-8c93-48cc-863c-29805e625045 b9cbc7c7d90d43063ac07ec79f3d8318 { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-02747.RNA-Seq.chimeric.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c544d21b-ac54-472a-be82-af7305c4f647.rna_seq.chimeric.gdc_realn.bam 42590901 BAM chimeric harmonized CPTAC3 cc1affef-b8f6-4533-8a2b-ae8959ab036e 451734a16e409dfede68af5ad31b809f { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-02747.RNA-Seq.genomic.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c544d21b-ac54-472a-be82-af7305c4f647.rna_seq.genomic.gdc_realn.bam 8436317085 BAM genomic harmonized CPTAC3 9f2a3393-ceca-40eb-ac04-f5e90d67ace1 4ab825dbb281e957fa2cb5a6ba68105a { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-02747.RNA-Seq.R1_L006.T C3L-02747 UCEC RNA-Seq tumor CPT0188480010 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGTCGGA-GCTTGCGC_S22_L006_R1_001.fastq.gz 3888266390 FASTQ R1_L006 unaligned CPTAC3 3cb651e1-c2a2-4f7d-bcbc-348c255b49ed 4f1ec37bc5e49adb0d48b80a45f1a5f5 { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-02747.RNA-Seq.R1_.T C3L-02747 UCEC RNA-Seq tumor CPT0348360001 20210723_P2_G3_WB7988-plate2_S75_R1_001.fastq.gz 5437415111 FASTQ R1_ unaligned CPTAC3 81138028-4130-4cf4-ac27-bf36e3e83039 2361608470dbbce13e38c4248bf66977 { 'aliquot_tag': 'ALQ_e83c940d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02747.RNA-Seq.R2_L006.T C3L-02747 UCEC RNA-Seq tumor CPT0188480010 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGTCGGA-GCTTGCGC_S22_L006_R2_001.fastq.gz 4526930489 FASTQ R2_L006 unaligned CPTAC3 134b54a4-abe8-48db-ac37-8c8d30ace986 92d17525c013668e1e8d48e2b9c3ba7d { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-02747.RNA-Seq.R2_.T C3L-02747 UCEC RNA-Seq tumor CPT0348360001 20210723_P2_G3_WB7988-plate2_S75_R2_001.fastq.gz 5531099316 FASTQ R2_ unaligned CPTAC3 56276d60-2394-48ff-a438-318c70060ca5 7a2600c542c621589ad4cfc91c8ab263 { 'aliquot_tag': 'ALQ_e83c940d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02747.RNA-Seq.transcriptome.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c544d21b-ac54-472a-be82-af7305c4f647.rna_seq.transcriptome.gdc_realn.bam 9000358977 BAM transcriptome harmonized CPTAC3 c418a50f-1681-4311-8a26-c5e21f6ba390 6a9c17f28bdf9955deff644fb7774bf6 { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-02747.RNA-Seq.chimeric.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c9d30e19-c01e-4394-b8bd-e14da2b503ba.rna_seq.chimeric.gdc_realn.bam 42571889 BAM chimeric harmonized CPTAC3 1ea7bc1f-a3e8-454f-b4b0-cd148e7cb971 2a98c0014714d4f32fab7429beba20a5 { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-02747.RNA-Seq.chimeric.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0348360001 e0a89709-91be-4794-a68f-33f641d10233.rna_seq.chimeric.gdc_realn.bam 196734723 BAM chimeric harmonized CPTAC3 dfa8410c-2597-46ae-bbc9-44812419f35d 80b5427886e69111c5ff64e48db86412 { 'aliquot_tag': 'ALQ_e83c940d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02747.RNA-Seq.genomic.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c9d30e19-c01e-4394-b8bd-e14da2b503ba.rna_seq.genomic.gdc_realn.bam 8437102035 BAM genomic harmonized CPTAC3 04fbce54-4b69-48a1-8b3a-82f20169e53d da6923fb819d60a78660b63ec1f7f6af { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-02747.RNA-Seq.genomic.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0348360001 e0a89709-91be-4794-a68f-33f641d10233.rna_seq.genomic.gdc_realn.bam 10145836482 BAM genomic harmonized CPTAC3 fa62e697-c8c6-4cdd-b9ad-1a81210a74cc 0a09d1425557fcf6b3fa0b7f38c4d7e7 { 'aliquot_tag': 'ALQ_e83c940d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02747.RNA-Seq.R1_L006.T C3L-02747 UCEC RNA-Seq tumor CPT0188480010 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGTCGGA-GCTTGCGC_S22_L006_R1_001.fastq.gz 3888266390 FASTQ R1_L006 unaligned CPTAC3 3cb651e1-c2a2-4f7d-bcbc-348c255b49ed 4f1ec37bc5e49adb0d48b80a45f1a5f5 { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02747.RNA-Seq.R2_L006.T C3L-02747 UCEC RNA-Seq tumor CPT0188480010 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGTCGGA-GCTTGCGC_S22_L006_R2_001.fastq.gz 4526930489 FASTQ R2_L006 unaligned CPTAC3 134b54a4-abe8-48db-ac37-8c8d30ace986 92d17525c013668e1e8d48e2b9c3ba7d { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-02747.RNA-Seq.T C3L-02747 UCEC RNA-Seq tumor CPT0348360001 20210723_P2_G3_WB7988-plate2_S75_R1_001.fastq.gz 5437415111 FASTQ unaligned CPTAC3 81138028-4130-4cf4-ac27-bf36e3e83039 2361608470dbbce13e38c4248bf66977 +C3L-02747.RNA-Seq.T C3L-02747 UCEC RNA-Seq tumor CPT0348360001 20210723_P2_G3_WB7988-plate2_S75_R2_001.fastq.gz 5531099316 FASTQ unaligned CPTAC3 56276d60-2394-48ff-a438-318c70060ca5 7a2600c542c621589ad4cfc91c8ab263 +C3L-02747.RNA-Seq.transcriptome.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0188480010 c9d30e19-c01e-4394-b8bd-e14da2b503ba.rna_seq.transcriptome.gdc_realn.bam 10346980095 BAM transcriptome harmonized CPTAC3 f24e4862-a539-456f-83e2-b255d1d983cc 1a560634f33dda3cc7e393c65a067bd2 { 'aliquot_tag': 'ALQ_5d4c26ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-02747.RNA-Seq.transcriptome.T.hg38 C3L-02747 UCEC RNA-Seq tumor CPT0348360001 e0a89709-91be-4794-a68f-33f641d10233.rna_seq.transcriptome.gdc_realn.bam 6144280229 BAM transcriptome harmonized CPTAC3 0e7407e5-478d-440b-9875-11515f5ccca3 5c1770402d6cf20052432e185ff2f93a { 'aliquot_tag': 'ALQ_e83c940d', 'gdc_sample_type': 'Primary Tumor' } C3L-02747.WGS.N C3L-02747 UCEC WGS blood_normal CPT0183170002 CPT0183170002.WholeGenome.RP-1303.bam 57478028720 BAM aligned CPTAC3 fc85e981-c23a-4956-97bc-d80e53e3ee5b ae3ea5d8d517eebf1e846e8e06d60c05 { 'aliquot_tag': 'ALQ_7ac3243f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02747.WGS.N.hg38 C3L-02747 UCEC WGS blood_normal CPT0183170002 9b229a65-285d-4818-9b93-380fc9891fbb_wgs_gdc_realn.bam 83974110633 BAM harmonized CPTAC3 ca6433d5-5901-4360-a0cc-be3613506b88 ead078fcc42616a8e420ae865e895426 { 'aliquot_tag': 'ALQ_7ac3243f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02747.WGS.T C3L-02747 UCEC WGS tumor CPT0188480007 CPT0188480007.WholeGenome.RP-1303.bam 81248685669 BAM aligned CPTAC3 4effdb2d-6695-4885-ab95-e4ad787b363e 2280791d9b41749d60a04b04c2b8c0b0 { 'aliquot_tag': 'ALQ_da338228', 'gdc_sample_type': 'Primary Tumor' } @@ -12021,22 +12810,32 @@ C3L-02747.WXS.N C3L-02747 UCEC WXS blood_normal CPT0183170002 CPT0183170002.Whol C3L-02747.WXS.N.hg38 C3L-02747 UCEC WXS blood_normal CPT0183170002 9b229a65-285d-4818-9b93-380fc9891fbb_wxs_gdc_realn.bam 34183771830 BAM harmonized CPTAC3 a45c7228-e30a-47b0-a158-a95993f62abd d6753e55bc518ca54e9b225677a718f2 { 'aliquot_tag': 'ALQ_7ac3243f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02747.WXS.T C3L-02747 UCEC WXS tumor CPT0188480007 CPT0188480007.WholeExome.RP-1303.bam 23143178993 BAM aligned CPTAC3 8bfdcdad-21be-4fd2-b769-0d2f511f2e87 3689d034352e023cf9d80ce4f9a13c70 { 'aliquot_tag': 'ALQ_da338228', 'gdc_sample_type': 'Primary Tumor' } C3L-02747.WXS.T.hg38 C3L-02747 UCEC WXS tumor CPT0188480007 d698845e-1220-41d8-bf5d-7363a5df2d14_wxs_gdc_realn.bam 32406282251 BAM harmonized CPTAC3 30713f87-3cc5-43c7-b2e0-18165e94110f b2078e4ee9e738ab3532869aa753b78c { 'aliquot_tag': 'ALQ_da338228', 'gdc_sample_type': 'Primary Tumor' } +C3L-02779.MethArray.Green.Tpb C3L-02779 AML Methylation Array tumor_peripheral_blood CPT0414580002 205987780161_R06C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a6b52a94-487c-47b7-9b19-b218b811654f e85233312dee3b9f0a517c42292bb709 { 'aliquot_tag': 'ALQ_f37d9112', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-02779.MethArray.Red.Tpb C3L-02779 AML Methylation Array tumor_peripheral_blood CPT0414580002 205987780161_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 52556bea-9e87-40b8-8f55-c3a0aed9ec05 869fedfc50cc7441661ac71c2a2b8167 { 'aliquot_tag': 'ALQ_f37d9112', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-02779.miRNA-Seq.Tpb C3L-02779 AML miRNA-Seq tumor_peripheral_blood CPT0414600001 220125_UNC32-K00270_0311_AHMNYYBBXY_CTATAC_S12_L003_R1_001.unaln.bam 243275360 BAM unaligned CPTAC3 94e4c3db-4ac5-4d7c-9fe2-9f9dc8a9e224 fb691c430ba63db16ae0ea2d747449d7 { 'aliquot_tag': 'ALQ_dc90f9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-02779.RNA-Seq.R1_L002.Tpb C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 220114_UNC32-K00270_0310_AHMWT5BBXY_TGCGGCGT-CCTCGGTA_S8_L002_R1_001.fastq.gz 4043417939 FASTQ R1_L002 unaligned CPTAC3 9d599c99-8756-426d-a6df-9620e51431fa 73636c741ebc04b9e8b60ddde8b9719a { 'aliquot_tag': 'ALQ_dc90f9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-02779.RNA-Seq.R2_L002.Tpb C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 220114_UNC32-K00270_0310_AHMWT5BBXY_TGCGGCGT-CCTCGGTA_S8_L002_R2_001.fastq.gz 4516145295 FASTQ R2_L002 unaligned CPTAC3 0a70c3b2-77d6-409d-82cf-1f729b1c3f15 1e3bf10f27664efe7f5e97c098fa63fb { 'aliquot_tag': 'ALQ_dc90f9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-02779.miRNA-Seq.Tpb.hg38 C3L-02779 AML miRNA-Seq tumor_peripheral_blood CPT0414600001 b1537e34-cb2d-4c8d-ae30-d6bffa344894_mirnaseq_gdc_realn.bam 274968207 BAM harmonized CPTAC3 6c0dbad0-1e0e-4f45-a764-db5a35506cca 2ea8672600b6907a6c3c3b3de6aa8933 { 'aliquot_tag': 'ALQ_dc90f9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-02779.RNA-Seq.chimeric.Tpb.hg38 C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 86ebfd06-cae3-4b1b-9569-896d47d2d544.rna_seq.chimeric.gdc_realn.bam 538570659 BAM chimeric harmonized CPTAC3 d81b83da-9f1b-4a49-8c56-5bbade78add8 49571d09412ddb66579003c94741fc42 { 'aliquot_tag': 'ALQ_dc90f9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-02779.RNA-Seq.genomic.Tpb.hg38 C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 86ebfd06-cae3-4b1b-9569-896d47d2d544.rna_seq.genomic.gdc_realn.bam 8311113266 BAM genomic harmonized CPTAC3 25b19379-cafc-4e2c-8c34-36569a456c16 58bff88a6370685150954bc9ec5d2670 { 'aliquot_tag': 'ALQ_dc90f9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-02779.RNA-Seq.R1_L002.Tpb C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 220114_UNC32-K00270_0310_AHMWT5BBXY_TGCGGCGT-CCTCGGTA_S8_L002_R1_001.fastq.gz 4043417939 FASTQ R1_L002 unaligned CPTAC3 9d599c99-8756-426d-a6df-9620e51431fa 73636c741ebc04b9e8b60ddde8b9719a { 'aliquot_tag': 'ALQ_dc90f9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L002' } +C3L-02779.RNA-Seq.R2_L002.Tpb C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 220114_UNC32-K00270_0310_AHMWT5BBXY_TGCGGCGT-CCTCGGTA_S8_L002_R2_001.fastq.gz 4516145295 FASTQ R2_L002 unaligned CPTAC3 0a70c3b2-77d6-409d-82cf-1f729b1c3f15 1e3bf10f27664efe7f5e97c098fa63fb { 'aliquot_tag': 'ALQ_dc90f9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L002' } +C3L-02779.RNA-Seq.transcriptome.Tpb.hg38 C3L-02779 AML RNA-Seq tumor_peripheral_blood CPT0414600001 86ebfd06-cae3-4b1b-9569-896d47d2d544.rna_seq.transcriptome.gdc_realn.bam 7955888806 BAM transcriptome harmonized CPTAC3 8135f300-7a6a-4226-80d1-5772663f8b35 13ef3ae37549bf0cb4cf64c972ab6a0b { 'aliquot_tag': 'ALQ_dc90f9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-02779.WGS.Nbc C3L-02779 AML WGS buccal_normal CPT0414560001 CPT0414560001.WholeGenome.RP-2158.bam 51106807073 BAM aligned CPTAC3 bde00534-14de-4f41-a5da-254de28cccc9 10694725d3fad760f8ab20d7685902c1 { 'aliquot_tag': 'ALQ_d5447ec9', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-02779.WGS.Nbc.hg38 C3L-02779 AML WGS buccal_normal CPT0414560001 dad5716d-fddd-4631-806b-9163381abba9_wgs_gdc_realn.bam 154929092591 BAM harmonized CPTAC3 15c037cc-7c13-4563-aebd-cf963b3cb3e8 ce2715530e35895a79269a3e4d9b9037 { 'aliquot_tag': 'ALQ_d5447ec9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-02779.WGS.Tpb C3L-02779 AML WGS tumor_peripheral_blood CPT0414580002 CPT0414580002.WholeGenome.RP-2158.bam 55163205149 BAM aligned CPTAC3 e3b10ca1-4fb9-4398-a789-2fe0443c1b5f d2e315473865cd6a534454c0fb3941f9 { 'aliquot_tag': 'ALQ_f37d9112', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-02779.WGS.Tpb.hg38 C3L-02779 AML WGS tumor_peripheral_blood CPT0414580002 821248bb-5679-49bd-ad37-14d52192cecf_wgs_gdc_realn.bam 165956927260 BAM harmonized CPTAC3 9e27196b-be7e-4e2e-8aa6-7b75b02bda7e 8d35f9d8779cbb9a928e0f1e262ba04c { 'aliquot_tag': 'ALQ_f37d9112', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-02779.WXS.Nbc C3L-02779 AML WXS buccal_normal CPT0414560001 CPT0414560001.WholeExome.RP-1303.bam 26995372670 BAM aligned CPTAC3 e8e09b24-a305-48b8-836a-4c7f6e683357 21175e68a3f5f22ef85f6eda1a06354c { 'aliquot_tag': 'ALQ_d5447ec9', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-02779.WXS.Nbc.hg38 C3L-02779 AML WXS buccal_normal CPT0414560001 dad5716d-fddd-4631-806b-9163381abba9_wxs_gdc_realn.bam 37612139490 BAM harmonized CPTAC3 adf548df-165a-4d62-8dbc-e520d78a169d 802e17c328b527b5d2e48d3cfde00d63 { 'aliquot_tag': 'ALQ_d5447ec9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-02779.WXS.Tpb C3L-02779 AML WXS tumor_peripheral_blood CPT0414580002 CPT0414580002.WholeExome.RP-1303.bam 22631885864 BAM aligned CPTAC3 de5489ea-90a5-473f-a60e-902dd94a947c c9bbee886a27e9d838ce29a89ba61245 { 'aliquot_tag': 'ALQ_f37d9112', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-02779.WXS.Tpb.hg38 C3L-02779 AML WXS tumor_peripheral_blood CPT0414580002 821248bb-5679-49bd-ad37-14d52192cecf_wxs_gdc_realn.bam 31291655214 BAM harmonized CPTAC3 16e82297-fe5b-4c67-96a2-f94850796941 745d182fed4c57353bb039c095ad7d5b { 'aliquot_tag': 'ALQ_f37d9112', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-02800.MethArray.Green.T C3L-02800 UCEC Methylation Array tumor CPT0186900011 203561620132_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 36a4caa9-ad39-418a-895b-90a6a62aee3a 265912c2b390652de69b3f95a1251c50 { 'aliquot_tag': 'ALQ_f69a351e', 'gdc_sample_type': 'Primary Tumor' } C3L-02800.MethArray.Red.T C3L-02800 UCEC Methylation Array tumor CPT0186900011 203561620132_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 dc32943f-007e-4f4e-ac79-5d931a21ee55 14978eafed3ff3238c7e2df9f7888be4 { 'aliquot_tag': 'ALQ_f69a351e', 'gdc_sample_type': 'Primary Tumor' } C3L-02800.miRNA-Seq.T C3L-02800 UCEC miRNA-Seq tumor CPT0186900014 190508_UNC31-K00269_0215_BH7FYKBBXY_TAGCTT_S10_L003_R1_001.unaln.bam 160952979 BAM unaligned CPTAC3 43c2f7df-b696-4f60-a299-e69d3b900eaa 787ec51b74423b4cd4f3a3b81edb82f4 { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor' } C3L-02800.miRNA-Seq.T.hg38 C3L-02800 UCEC miRNA-Seq tumor CPT0186900014 240ce257-3ffd-4c04-90e6-3acc81095712_mirnaseq_gdc_realn.bam 178746928 BAM harmonized CPTAC3 4033fddf-8012-421b-b450-d8239ce00c51 b1df2576414d91d08c7a50ff85d750c4 { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor' } -C3L-02800.RNA-Seq.chimeric.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 ecf47360-a3b4-4a5f-a1b5-d62743fe72d6.rna_seq.chimeric.gdc_realn.bam 39258578 BAM chimeric harmonized CPTAC3 833e932d-157e-4f39-b652-e7cb221d8b68 279461bb13b04fb693fb7d95755c68e0 { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor' } -C3L-02800.RNA-Seq.genomic.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 ecf47360-a3b4-4a5f-a1b5-d62743fe72d6.rna_seq.genomic.gdc_realn.bam 9347785577 BAM genomic harmonized CPTAC3 513458b2-3f90-4409-82b1-f17baa30f76c 65eefa101d374083c42da9445f6d9a92 { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor' } -C3L-02800.RNA-Seq.R1_L008.T C3L-02800 UCEC RNA-Seq tumor CPT0186900014 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAATAC-TTCTAACG_S30_L008_R1_001.fastq.gz 4508868945 FASTQ R1_L008 unaligned CPTAC3 74796345-0996-44be-aa00-56c8b0a1a1ac 77e0c91c86d620b499fb80f88f47bed0 { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor' } -C3L-02800.RNA-Seq.R2_L008.T C3L-02800 UCEC RNA-Seq tumor CPT0186900014 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAATAC-TTCTAACG_S30_L008_R2_001.fastq.gz 5069170985 FASTQ R2_L008 unaligned CPTAC3 923374c5-05a8-454f-ab87-2f06fb05351b 1281e30a172e916984cd238924cd6d12 { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor' } -C3L-02800.RNA-Seq.transcriptome.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 ecf47360-a3b4-4a5f-a1b5-d62743fe72d6.rna_seq.transcriptome.gdc_realn.bam 9820835968 BAM transcriptome harmonized CPTAC3 85e4a26d-f90b-4157-b6ab-35971c703e1b e4b7f694d97c142dbbaae71d07328b2c { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor' } +C3L-02800.RNA-Seq.chimeric.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 fd205e69-5405-487f-927b-bc283612d80c.rna_seq.chimeric.gdc_realn.bam 39257718 BAM chimeric harmonized CPTAC3 abf2c1b6-546c-4b3c-8423-ca4d4a884dad bf81f55f973d59db86a8056a22d966cf { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor' } +C3L-02800.RNA-Seq.genomic.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 fd205e69-5405-487f-927b-bc283612d80c.rna_seq.genomic.gdc_realn.bam 9349924123 BAM genomic harmonized CPTAC3 d5be1158-7d0d-4cd7-acd5-d16a56530b9c cf9ec77bbf3cd39fa9d3093c3a1b115e { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor' } +C3L-02800.RNA-Seq.R1_L008.T C3L-02800 UCEC RNA-Seq tumor CPT0186900014 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAATAC-TTCTAACG_S30_L008_R1_001.fastq.gz 4508868945 FASTQ R1_L008 unaligned CPTAC3 74796345-0996-44be-aa00-56c8b0a1a1ac 77e0c91c86d620b499fb80f88f47bed0 { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02800.RNA-Seq.R2_L008.T C3L-02800 UCEC RNA-Seq tumor CPT0186900014 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAATAC-TTCTAACG_S30_L008_R2_001.fastq.gz 5069170985 FASTQ R2_L008 unaligned CPTAC3 923374c5-05a8-454f-ab87-2f06fb05351b 1281e30a172e916984cd238924cd6d12 { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-02800.RNA-Seq.transcriptome.T.hg38 C3L-02800 UCEC RNA-Seq tumor CPT0186900014 fd205e69-5405-487f-927b-bc283612d80c.rna_seq.transcriptome.gdc_realn.bam 11243313052 BAM transcriptome harmonized CPTAC3 61373585-171d-4f9e-8f1c-d64eb3a1201c 9b7b5e69baf45ff012a079a0398401f4 { 'aliquot_tag': 'ALQ_86f0c191', 'gdc_sample_type': 'Primary Tumor' } C3L-02800.WGS.N C3L-02800 UCEC WGS blood_normal CPT0186930002 CPT0186930002.WholeGenome.RP-1303.bam 76994663609 BAM aligned CPTAC3 8403d25d-aee7-4997-ac02-d60dd863a866 842f42332ec479dd69f88b194e174e4c { 'aliquot_tag': 'ALQ_31282f35', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02800.WGS.N.hg38 C3L-02800 UCEC WGS blood_normal CPT0186930002 abea41ce-f548-4b59-94df-c25ea1a3d80b_wgs_gdc_realn.bam 111088746017 BAM harmonized CPTAC3 0f97e2fd-22e2-4ae6-9129-26647af4cb04 7e0fe5d6274ce6da94d049838f5fa916 { 'aliquot_tag': 'ALQ_31282f35', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02800.WGS.T C3L-02800 UCEC WGS tumor CPT0186900011 CPT0186900011.WholeGenome.RP-1303.bam 67360853598 BAM aligned CPTAC3 dba5cee9-0c6a-4332-92c7-47511d01e3fc 510332158df764f1a8ab91281e5aefba { 'aliquot_tag': 'ALQ_f69a351e', 'gdc_sample_type': 'Primary Tumor' } @@ -12046,17 +12845,21 @@ C3L-02800.WXS.N.hg38 C3L-02800 UCEC WXS blood_normal CPT0186930002 abea41ce-f548 C3L-02800.WXS.T C3L-02800 UCEC WXS tumor CPT0186900011 CPT0186900011.WholeExome.RP-1303.bam 17537496250 BAM aligned CPTAC3 b41aec9d-cb55-4a10-9887-6dc24d66275d e050b58798a0bc7307042918992f9516 { 'aliquot_tag': 'ALQ_f69a351e', 'gdc_sample_type': 'Primary Tumor' } C3L-02800.WXS.T.hg38 C3L-02800 UCEC WXS tumor CPT0186900011 aeb5e654-0b85-4347-a109-e0312b7778a4_wxs_gdc_realn.bam 24766170268 BAM harmonized CPTAC3 ad42449e-3474-49f9-ae0c-31e10778016f e2ac28b3299753946b786c67e90e1108 { 'aliquot_tag': 'ALQ_f69a351e', 'gdc_sample_type': 'Primary Tumor' } C3L-02802.DUP_2919687e.WGS.T C3L-02802 UCEC WGS tumor CPT0174890011_1 CPT0174890011_1.WholeGenome.RP-1303.bam 61753133166 BAM aligned CPTAC3 8813404d-81e6-4a76-8b2e-5f96182564d7 3599b035206bc3e7de2b81174e012283 { 'aliquot_tag': 'DUP_2919687e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } +C3L-02802.DUP_2919687e.WGS.T.hg38 C3L-02802 UCEC WGS tumor CPT0174890011_1 77405ed9-5f5c-4671-bc9a-3ac348e17d81_wgs_gdc_realn.bam 90492676749 BAM harmonized CPTAC3 f488ffbb-175a-4f0d-82b1-dbe7eaa933bb 4d6a97177edea267ba2d4b3ea3a2a9bc { 'aliquot_tag': 'DUP_2919687e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } C3L-02802.MethArray.Green.T C3L-02802 UCEC Methylation Array tumor CPT0174890011 203561620016_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 52468aaa-59af-40e6-8bbb-894e2fbb2718 50be4dcf3bf8ef56aee6689327e779dd { 'aliquot_tag': 'ALQ_7e69874f', 'gdc_sample_type': 'Primary Tumor' } C3L-02802.MethArray.Red.T C3L-02802 UCEC Methylation Array tumor CPT0174890011 203561620016_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 46220e8f-43ef-4b3a-9a42-82f2ecf89436 8e87c65d76797cc6e6bcaf5518e58165 { 'aliquot_tag': 'ALQ_7e69874f', 'gdc_sample_type': 'Primary Tumor' } C3L-02802.miRNA-Seq.T C3L-02802 UCEC miRNA-Seq tumor CPT0174890014 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGTCA_S15_L003_R1_001.unaln.bam 283399994 BAM unaligned CPTAC3 9f8995f2-bdf6-4cc0-b8ea-22e7f4722528 cb092b98a6b53a2f42973e8faa4e3e78 { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor' } C3L-02802.miRNA-Seq.T.hg38 C3L-02802 UCEC miRNA-Seq tumor CPT0174890014 d04ea83e-8873-4424-915d-a796ae15b228_mirnaseq_gdc_realn.bam 316165756 BAM harmonized CPTAC3 7b7a2d54-35f2-4169-a889-55d39b4e5789 191731fa630e9062d363bc535e19132e { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02802.RNA-Seq.chimeric.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 fc2baf23-b5fc-43fc-81e3-ed30f8a324c8.rna_seq.chimeric.gdc_realn.bam 38085547 BAM chimeric harmonized CPTAC3 91b38763-d2a4-4277-80a3-7ccfaab75fd5 d0c518ef4c5fb185b963a8a1e5ea6c76 { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02802.RNA-Seq.genomic.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 fc2baf23-b5fc-43fc-81e3-ed30f8a324c8.rna_seq.genomic.gdc_realn.bam 8866487490 BAM genomic harmonized CPTAC3 76e407d4-f08a-4b6e-8b42-954ef8967c41 3814c7e8c572713b3f3f7de6de2ced1b { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02802.RNA-Seq.R1_L007.T C3L-02802 UCEC RNA-Seq tumor CPT0174890014 190523_UNC32-K00270_0176_BH7CW7BBXY_TTGCCTAG-ACCACTTA_S27_L007_R1_001.fastq.gz 4130266603 FASTQ R1_L007 unaligned CPTAC3 2e2de8aa-2ee9-4900-bb8f-a617e3a161dc a902b6b6b9357675c404dd8a96939c57 { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02802.RNA-Seq.R1_.T C3L-02802 UCEC RNA-Seq tumor CPT0174920001 20210729_P3_H6_WB7988-Plate3_S90_R1_001.fastq.gz 6331741084 FASTQ R1_ unaligned CPTAC3 2919c92e-46ae-471b-8662-1e786b95dc8a 3b88775d3c3625a0332819e70bd085b8 { 'aliquot_tag': 'ALQ_dbfe54ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02802.RNA-Seq.R2_L007.T C3L-02802 UCEC RNA-Seq tumor CPT0174890014 190523_UNC32-K00270_0176_BH7CW7BBXY_TTGCCTAG-ACCACTTA_S27_L007_R2_001.fastq.gz 4774861744 FASTQ R2_L007 unaligned CPTAC3 ecf64c63-45b2-4d74-a4c6-04042fa0c697 968a2eff76682875223f893aa1798a7a { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02802.RNA-Seq.R2_.T C3L-02802 UCEC RNA-Seq tumor CPT0174920001 20210729_P3_H6_WB7988-Plate3_S90_R2_001.fastq.gz 6509016362 FASTQ R2_ unaligned CPTAC3 06e16c82-9218-434d-8e82-3af32f30c2aa 2ed9eb53871965b6aa459da30c8df9b6 { 'aliquot_tag': 'ALQ_dbfe54ba', 'gdc_sample_type': 'Primary Tumor' } -C3L-02802.RNA-Seq.transcriptome.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 fc2baf23-b5fc-43fc-81e3-ed30f8a324c8.rna_seq.transcriptome.gdc_realn.bam 8807999060 BAM transcriptome harmonized CPTAC3 5b00920a-abad-47d2-9cf5-a44742936e07 13c75147a6fcb5d51a7a3a50a09b39ff { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02802.RNA-Seq.chimeric.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 5a7a6f5b-583d-4b8d-b78f-e3c9ced9da7e.rna_seq.chimeric.gdc_realn.bam 38082988 BAM chimeric harmonized CPTAC3 f33ebf20-36ab-4ada-8087-c9ebc5109283 3eb92e6fd0136fb5e1be1979b444b488 { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02802.RNA-Seq.chimeric.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174920001 62d271e4-5b31-4bb1-9fd4-def6251501b8.rna_seq.chimeric.gdc_realn.bam 212784333 BAM chimeric harmonized CPTAC3 d57ffb73-14e2-4698-9b49-5eae188fd0e4 923388a00ad1643cd511f3496e1f9d89 { 'aliquot_tag': 'ALQ_dbfe54ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-02802.RNA-Seq.genomic.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 5a7a6f5b-583d-4b8d-b78f-e3c9ced9da7e.rna_seq.genomic.gdc_realn.bam 8867478957 BAM genomic harmonized CPTAC3 748b8279-7c87-4599-a526-fc0a2c51babd f8b316c38b33077e2f1a7d63509ff3d2 { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02802.RNA-Seq.genomic.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174920001 62d271e4-5b31-4bb1-9fd4-def6251501b8.rna_seq.genomic.gdc_realn.bam 9830096020 BAM genomic harmonized CPTAC3 e15aa588-2690-48d5-9f90-aa832f81a0d4 986d9619869d1d73885dc4afbcf68c5a { 'aliquot_tag': 'ALQ_dbfe54ba', 'gdc_sample_type': 'Primary Tumor' } +C3L-02802.RNA-Seq.R1_L007.T C3L-02802 UCEC RNA-Seq tumor CPT0174890014 190523_UNC32-K00270_0176_BH7CW7BBXY_TTGCCTAG-ACCACTTA_S27_L007_R1_001.fastq.gz 4130266603 FASTQ R1_L007 unaligned CPTAC3 2e2de8aa-2ee9-4900-bb8f-a617e3a161dc a902b6b6b9357675c404dd8a96939c57 { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02802.RNA-Seq.R2_L007.T C3L-02802 UCEC RNA-Seq tumor CPT0174890014 190523_UNC32-K00270_0176_BH7CW7BBXY_TTGCCTAG-ACCACTTA_S27_L007_R2_001.fastq.gz 4774861744 FASTQ R2_L007 unaligned CPTAC3 ecf64c63-45b2-4d74-a4c6-04042fa0c697 968a2eff76682875223f893aa1798a7a { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02802.RNA-Seq.T C3L-02802 UCEC RNA-Seq tumor CPT0174920001 20210729_P3_H6_WB7988-Plate3_S90_R1_001.fastq.gz 6331741084 FASTQ unaligned CPTAC3 2919c92e-46ae-471b-8662-1e786b95dc8a 3b88775d3c3625a0332819e70bd085b8 +C3L-02802.RNA-Seq.T C3L-02802 UCEC RNA-Seq tumor CPT0174920001 20210729_P3_H6_WB7988-Plate3_S90_R2_001.fastq.gz 6509016362 FASTQ unaligned CPTAC3 06e16c82-9218-434d-8e82-3af32f30c2aa 2ed9eb53871965b6aa459da30c8df9b6 +C3L-02802.RNA-Seq.transcriptome.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174890014 5a7a6f5b-583d-4b8d-b78f-e3c9ced9da7e.rna_seq.transcriptome.gdc_realn.bam 10083283549 BAM transcriptome harmonized CPTAC3 54f035be-ae8c-4669-ab0a-e3b70d8180d8 49f99206f85187c0803444bd8383a501 { 'aliquot_tag': 'ALQ_e0373c0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02802.RNA-Seq.transcriptome.T.hg38 C3L-02802 UCEC RNA-Seq tumor CPT0174920001 62d271e4-5b31-4bb1-9fd4-def6251501b8.rna_seq.transcriptome.gdc_realn.bam 4714027512 BAM transcriptome harmonized CPTAC3 2a6fd9da-27e1-422d-bce0-e3190190a541 b3b2a3b07df5b60fffa2f422b12eaedb { 'aliquot_tag': 'ALQ_dbfe54ba', 'gdc_sample_type': 'Primary Tumor' } C3L-02802.WGS.N C3L-02802 UCEC WGS blood_normal CPT0175510002 CPT0175510002.WholeGenome.RP-1303.bam 69215051337 BAM aligned CPTAC3 211e1e48-db95-4b28-9c05-6bb8b06e4906 dba5d5bd63b5c38e7c8ef2acb897a081 { 'aliquot_tag': 'ALQ_d4e2b41f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02802.WGS.N.hg38 C3L-02802 UCEC WGS blood_normal CPT0175510002 b9b8e517-9b96-4668-96cb-472c9816bfc8_wgs_gdc_realn.bam 101697758036 BAM harmonized CPTAC3 d614692d-045c-4bd8-8e70-7d28a11c9f4c fe5906267f0b252594a723923260f692 { 'aliquot_tag': 'ALQ_d4e2b41f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02802.WGS.T C3L-02802 UCEC WGS tumor CPT0174890011 CPT0174890011.WholeGenome.RP-1303.bam 18865620534 BAM aligned CPTAC3 0fac09db-2c4b-4895-9b6d-7c44b07d7f7f 0aaa0d0a4f58278e6bc7c46e1c53e238 { 'aliquot_tag': 'ALQ_7e69874f', 'gdc_sample_type': 'Primary Tumor' } @@ -12075,10 +12878,10 @@ C3L-02809.RNA-Seq.chimeric.A.hg38 C3L-02809 PDA RNA-Seq tissue_normal CPT0174800 C3L-02809.RNA-Seq.chimeric.T.hg38 C3L-02809 PDA RNA-Seq tumor CPT0174700010 ffd639ab-3736-4c3c-9f68-c5a2e69e2d3a.rna_seq.chimeric.gdc_realn.bam 43408460 BAM chimeric harmonized CPTAC3 f7b36f52-218f-4452-ba89-79cd96b53274 e7c0ee9075bb2631c324d640742a224a { 'aliquot_tag': 'ALQ_f528677d', 'gdc_sample_type': 'Primary Tumor' } C3L-02809.RNA-Seq.genomic.A.hg38 C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 19d4dcb4-9491-49d5-901f-a0830a99d4f7.rna_seq.genomic.gdc_realn.bam 7019982424 BAM genomic harmonized CPTAC3 fcadb0b3-5882-42fc-84fa-1ae534b5f55f 7478472bd2f5b4ad547c08a712351249 { 'aliquot_tag': 'ALQ_8301714a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02809.RNA-Seq.genomic.T.hg38 C3L-02809 PDA RNA-Seq tumor CPT0174700010 ffd639ab-3736-4c3c-9f68-c5a2e69e2d3a.rna_seq.genomic.gdc_realn.bam 9130664975 BAM genomic harmonized CPTAC3 c2eff32f-c4a7-4119-9702-2c4d3aa67d4e c03bde0f865d65c50f94662db078f69d { 'aliquot_tag': 'ALQ_f528677d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02809.RNA-Seq.R1_L005.A C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 190725_UNC32-K00270_0194_AH7HHFBBXY_GGAGCGTC-GTCCGTGC_S21_L005_R1_001.fastq.gz 3510252624 FASTQ R1_L005 unaligned CPTAC3 704a56a4-7f6e-4930-bddf-44ba1e59e6fd 0864afd3f1fdcd20ac6d10ab8335837b { 'aliquot_tag': 'ALQ_8301714a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02809.RNA-Seq.R1_L005.T C3L-02809 PDA RNA-Seq tumor CPT0174700010 190614_UNC32-K00270_0182_BH7777BBXY_TACCGAGG-CCTGAACT_S18_L005_R1_001.fastq.gz 3768839415 FASTQ R1_L005 unaligned CPTAC3 fec185cf-c77d-4d82-988b-d5cbfdd25c70 d6ad8eabe2669cb9766f2b22776b38e1 { 'aliquot_tag': 'ALQ_f528677d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02809.RNA-Seq.R2_L005.A C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 190725_UNC32-K00270_0194_AH7HHFBBXY_GGAGCGTC-GTCCGTGC_S21_L005_R2_001.fastq.gz 3547038861 FASTQ R2_L005 unaligned CPTAC3 2d6bffbd-1904-4b5f-89bd-2f151d719cb3 3efad2927f5cd9ce8c1708471740673d { 'aliquot_tag': 'ALQ_8301714a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02809.RNA-Seq.R2_L005.T C3L-02809 PDA RNA-Seq tumor CPT0174700010 190614_UNC32-K00270_0182_BH7777BBXY_TACCGAGG-CCTGAACT_S18_L005_R2_001.fastq.gz 4213239979 FASTQ R2_L005 unaligned CPTAC3 257d874a-4d88-428f-b288-8fbfcb67b18a 06ff9370e2bbee783d0dffedf408dbc9 { 'aliquot_tag': 'ALQ_f528677d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02809.RNA-Seq.R1_L005.A C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 190725_UNC32-K00270_0194_AH7HHFBBXY_GGAGCGTC-GTCCGTGC_S21_L005_R1_001.fastq.gz 3510252624 FASTQ R1_L005 unaligned CPTAC3 704a56a4-7f6e-4930-bddf-44ba1e59e6fd 0864afd3f1fdcd20ac6d10ab8335837b { 'aliquot_tag': 'ALQ_8301714a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02809.RNA-Seq.R1_L005.T C3L-02809 PDA RNA-Seq tumor CPT0174700010 190614_UNC32-K00270_0182_BH7777BBXY_TACCGAGG-CCTGAACT_S18_L005_R1_001.fastq.gz 3768839415 FASTQ R1_L005 unaligned CPTAC3 fec185cf-c77d-4d82-988b-d5cbfdd25c70 d6ad8eabe2669cb9766f2b22776b38e1 { 'aliquot_tag': 'ALQ_f528677d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02809.RNA-Seq.R2_L005.A C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 190725_UNC32-K00270_0194_AH7HHFBBXY_GGAGCGTC-GTCCGTGC_S21_L005_R2_001.fastq.gz 3547038861 FASTQ R2_L005 unaligned CPTAC3 2d6bffbd-1904-4b5f-89bd-2f151d719cb3 3efad2927f5cd9ce8c1708471740673d { 'aliquot_tag': 'ALQ_8301714a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02809.RNA-Seq.R2_L005.T C3L-02809 PDA RNA-Seq tumor CPT0174700010 190614_UNC32-K00270_0182_BH7777BBXY_TACCGAGG-CCTGAACT_S18_L005_R2_001.fastq.gz 4213239979 FASTQ R2_L005 unaligned CPTAC3 257d874a-4d88-428f-b288-8fbfcb67b18a 06ff9370e2bbee783d0dffedf408dbc9 { 'aliquot_tag': 'ALQ_f528677d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-02809.RNA-Seq.transcriptome.A.hg38 C3L-02809 PDA RNA-Seq tissue_normal CPT0174800007 19d4dcb4-9491-49d5-901f-a0830a99d4f7.rna_seq.transcriptome.gdc_realn.bam 9429987561 BAM transcriptome harmonized CPTAC3 79fd57eb-edd3-4996-a5e8-7be7a595bee2 7c0ebb9d030aaf9d49864c6f2258c12f { 'aliquot_tag': 'ALQ_8301714a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02809.RNA-Seq.transcriptome.T.hg38 C3L-02809 PDA RNA-Seq tumor CPT0174700010 ffd639ab-3736-4c3c-9f68-c5a2e69e2d3a.rna_seq.transcriptome.gdc_realn.bam 9258465871 BAM transcriptome harmonized CPTAC3 967ca3f5-da1f-413a-a029-bdf66c76f964 2d0ded9561513f721365e9a4fb196cce { 'aliquot_tag': 'ALQ_f528677d', 'gdc_sample_type': 'Primary Tumor' } C3L-02809.Targeted.T C3L-02809 PDA Targeted Sequencing tumor CPT0174700007 CPT0174700007.CustomSelection.RP-1303.PDO-18786.bam 4268814606 BAM aligned CPTAC3 9a32dd39-1dc9-4b33-bcdf-80fdb1283d5f f36573dc020dd9aa89260f372c7c5cda { 'aliquot_tag': 'ALQ_7257c39f', 'gdc_sample_type': 'Primary Tumor' } @@ -12099,16 +12902,16 @@ C3L-02834.miRNA-Seq.A C3L-02834 LUAD miRNA-Seq tissue_normal CPT0174580010 19013 C3L-02834.miRNA-Seq.A.hg38 C3L-02834 LUAD miRNA-Seq tissue_normal CPT0174580010 8440718a-6af6-4007-a7a2-6c13323307f5_mirnaseq_gdc_realn.bam 221456857 BAM harmonized CPTAC3 338968c7-ffdd-4416-9ae7-33d41e737fd1 d588d7b8360843266c681dcc87cb7789 { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02834.miRNA-Seq.T C3L-02834 LUAD miRNA-Seq tumor CPT0174510009 190130_UNC31-K00269_0188_BH2FGCBBXY_CTATAC_S39_L007_R1_001.unaln.bam 202014826 BAM unaligned CPTAC3 7daefd8f-98ef-4383-b603-f1675d90003d e52a3dc987e4b10c78549775660672e9 { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor' } C3L-02834.miRNA-Seq.T.hg38 C3L-02834 LUAD miRNA-Seq tumor CPT0174510009 17f25ea0-e14f-41b4-b564-fdb3508f7697_mirnaseq_gdc_realn.bam 223875545 BAM harmonized CPTAC3 af7541c3-9cd9-4dd0-8d0b-634eadd0711b 3a2d81974099dc6dcf3fb0aad40bdf36 { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor' } -C3L-02834.RNA-Seq.chimeric.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 6b17bed5-e909-484a-9413-d5b8de43f8a2.rna_seq.chimeric.gdc_realn.bam 387338235 BAM chimeric harmonized CPTAC3 784e3b8e-fb41-44fd-9a19-bcbc2414e265 a24871ba29a5c7bd093d77d71f888770 { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02834.RNA-Seq.chimeric.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 1fcc15c5-9abf-4247-9599-f3ce70a44a63.rna_seq.chimeric.gdc_realn.bam 48340008 BAM chimeric harmonized CPTAC3 9d5ab3f4-636a-4b1f-b6f8-814a3616b28e fd02f286a17a1881794a75d800561a0a { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor' } -C3L-02834.RNA-Seq.genomic.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 6b17bed5-e909-484a-9413-d5b8de43f8a2.rna_seq.genomic.gdc_realn.bam 9213358189 BAM genomic harmonized CPTAC3 bf88e499-4735-4c0b-81cc-834dc6adf0c3 604d724796a08f5f502cb3d725e9beae { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02834.RNA-Seq.genomic.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 1fcc15c5-9abf-4247-9599-f3ce70a44a63.rna_seq.genomic.gdc_realn.bam 9394491932 BAM genomic harmonized CPTAC3 57a58ca1-8434-4691-be91-d113fd380b4b 9461e16c5592f183fd79f218d96b7da7 { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor' } -C3L-02834.RNA-Seq.R1_L003.T C3L-02834 LUAD RNA-Seq tumor CPT0174510009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATGTCA_S11_L003_R1_001.fastq.gz 4370391562 FASTQ R1_L003 unaligned CPTAC3 ca9740e8-4c6a-4035-afd7-ce31585fec56 ca6885a74642b28643253c8553d48eba { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor' } -C3L-02834.RNA-Seq.R1_L008.A C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L008_R1_001.fastq.gz 3954910237 FASTQ R1_L008 unaligned CPTAC3 2e99d1c7-3e0e-4254-8f2f-f01ee5156a9f 6d3a94e472178e7d6d368c2bf1b7ad52 { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02834.RNA-Seq.R2_L003.T C3L-02834 LUAD RNA-Seq tumor CPT0174510009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATGTCA_S11_L003_R2_001.fastq.gz 4653988220 FASTQ R2_L003 unaligned CPTAC3 c1914d5e-4cd1-44d7-b9d3-c8bcb774dbbf 4605ed4fbedfc230f1db8d3ec8b5a473 { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor' } -C3L-02834.RNA-Seq.R2_L008.A C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L008_R2_001.fastq.gz 4399984770 FASTQ R2_L008 unaligned CPTAC3 d6d03f11-4a9f-4e92-9da3-c5941b2bfaa5 73a0f155282ce4fd5d46916b4be237ec { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02834.RNA-Seq.transcriptome.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 6b17bed5-e909-484a-9413-d5b8de43f8a2.rna_seq.transcriptome.gdc_realn.bam 8510198295 BAM transcriptome harmonized CPTAC3 f693e6dc-2713-4a09-b951-82cf056c340e 86fa5b21a82ce3ba8357993a4d15e619 { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02834.RNA-Seq.transcriptome.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 1fcc15c5-9abf-4247-9599-f3ce70a44a63.rna_seq.transcriptome.gdc_realn.bam 9362169769 BAM transcriptome harmonized CPTAC3 3bfe92b7-359e-4538-bdf3-8eecfd0ce123 edcdabc09f1e0e3f53ec341bb04515a9 { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor' } +C3L-02834.RNA-Seq.chimeric.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 e0f1bb0d-29c3-4114-ba3f-abeac8a27c95.rna_seq.chimeric.gdc_realn.bam 387311404 BAM chimeric harmonized CPTAC3 31022279-829f-4b3c-b68e-388e7ab81936 9b7913b348c6aed8253a31cc6388ffad { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02834.RNA-Seq.chimeric.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 209b2457-fb74-4d86-8f12-344199b8137c.rna_seq.chimeric.gdc_realn.bam 48330818 BAM chimeric harmonized CPTAC3 4b31fa1f-c3f2-4cdd-b54c-0e1ed41c8803 232eb2124bff32e406151f7bf6b55e37 { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor' } +C3L-02834.RNA-Seq.genomic.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 e0f1bb0d-29c3-4114-ba3f-abeac8a27c95.rna_seq.genomic.gdc_realn.bam 9214493946 BAM genomic harmonized CPTAC3 b8d1b37a-103c-4b21-ba69-ea5625b85dcc 98765b4fdd86d37878f15f182a64f18f { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02834.RNA-Seq.genomic.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 209b2457-fb74-4d86-8f12-344199b8137c.rna_seq.genomic.gdc_realn.bam 9396104893 BAM genomic harmonized CPTAC3 b316ef0f-0ff3-47e6-8ba8-e2ca0f6ac8f9 fc1b1728ae1645912ce2041b5814d273 { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor' } +C3L-02834.RNA-Seq.R1_L003.T C3L-02834 LUAD RNA-Seq tumor CPT0174510009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATGTCA_S11_L003_R1_001.fastq.gz 4370391562 FASTQ R1_L003 unaligned CPTAC3 ca9740e8-4c6a-4035-afd7-ce31585fec56 ca6885a74642b28643253c8553d48eba { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02834.RNA-Seq.R1_L008.A C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L008_R1_001.fastq.gz 3954910237 FASTQ R1_L008 unaligned CPTAC3 2e99d1c7-3e0e-4254-8f2f-f01ee5156a9f 6d3a94e472178e7d6d368c2bf1b7ad52 { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02834.RNA-Seq.R2_L003.T C3L-02834 LUAD RNA-Seq tumor CPT0174510009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATGTCA_S11_L003_R2_001.fastq.gz 4653988220 FASTQ R2_L003 unaligned CPTAC3 c1914d5e-4cd1-44d7-b9d3-c8bcb774dbbf 4605ed4fbedfc230f1db8d3ec8b5a473 { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02834.RNA-Seq.R2_L008.A C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L008_R2_001.fastq.gz 4399984770 FASTQ R2_L008 unaligned CPTAC3 d6d03f11-4a9f-4e92-9da3-c5941b2bfaa5 73a0f155282ce4fd5d46916b4be237ec { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02834.RNA-Seq.transcriptome.A.hg38 C3L-02834 LUAD RNA-Seq tissue_normal CPT0174580010 e0f1bb0d-29c3-4114-ba3f-abeac8a27c95.rna_seq.transcriptome.gdc_realn.bam 9600305533 BAM transcriptome harmonized CPTAC3 c940144e-af2e-4074-bf7d-76d0fcaa85ec 45fb81a05890b24409869c10bacf3e00 { 'aliquot_tag': 'ALQ_88908db7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02834.RNA-Seq.transcriptome.T.hg38 C3L-02834 LUAD RNA-Seq tumor CPT0174510009 209b2457-fb74-4d86-8f12-344199b8137c.rna_seq.transcriptome.gdc_realn.bam 10612072010 BAM transcriptome harmonized CPTAC3 bdf6c334-ece0-460a-b138-0b8b0e356f15 ed1a9b800083356bbe9ee9c5e51e5123 { 'aliquot_tag': 'ALQ_e5476623', 'gdc_sample_type': 'Primary Tumor' } C3L-02834.WGS.A C3L-02834 LUAD WGS tissue_normal CPT0174580007 CPT0174580007.WholeGenome.RP-1303.bam 61304027006 BAM aligned CPTAC3 eae7b4ce-2ae2-42aa-ae85-6c2443d6e4dd 3877a7b680db8c4814d4e0b139fb13e2 { 'aliquot_tag': 'ALQ_fef2955', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02834.WGS.A.hg38 C3L-02834 LUAD WGS tissue_normal CPT0174580007 a5d3e17e-9986-4f1f-a853-6c740289e7b1_wgs_gdc_realn.bam 90943543429 BAM harmonized CPTAC3 733b2978-7e71-4d6b-91de-c4d6b485247a ebf2a268540e4190de56fb3c1ec82f97 { 'aliquot_tag': 'ALQ_fef2955', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02834.WGS.N C3L-02834 LUAD WGS blood_normal CPT0175490002 CPT0175490002.WholeGenome.RP-1303.bam 63488874561 BAM aligned CPTAC3 cf36d3bf-b9d6-4128-8272-74df480369d4 bf7b790085186228a5bb532e920256b9 { 'aliquot_tag': 'ALQ_2fce2c7b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12127,16 +12930,16 @@ C3L-02841.miRNA-Seq.A C3L-02841 CCRCC miRNA-Seq tissue_normal CPT0172140006 1901 C3L-02841.miRNA-Seq.A.hg38 C3L-02841 CCRCC miRNA-Seq tissue_normal CPT0172140006 38052566-34b3-40c4-ae5c-3734fe942c71_mirnaseq_gdc_realn.bam 182116204 BAM harmonized CPTAC3 e20dc903-37c0-49f3-984c-5e060622077a c1cf7585c35934f1e408ba68c0658ba7 { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02841.miRNA-Seq.T C3L-02841 CCRCC miRNA-Seq tumor CPT0172130009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L004_R1_001.unaln.bam 182321424 BAM unaligned CPTAC3 545b336f-9b87-4343-a117-02c29d886fdb f0da83d9f23788e00b5e8299f3dd2415 { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor' } C3L-02841.miRNA-Seq.T.hg38 C3L-02841 CCRCC miRNA-Seq tumor CPT0172130009 82431e1b-8340-4256-947f-6daa0abfaa92_mirnaseq_gdc_realn.bam 202353370 BAM harmonized CPTAC3 e15a228c-c968-431b-ba58-53857085779c adb4dbbe9e394303b3bfb7917b8bbaee { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02841.RNA-Seq.chimeric.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 d4ac920b-5886-4815-a49a-274136b6863d.rna_seq.chimeric.gdc_realn.bam 29817340 BAM chimeric harmonized CPTAC3 0cad0fd2-ee5b-485b-80c4-a63151475069 9e16716d06e15898f54060a81d706cbe { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02841.RNA-Seq.chimeric.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 7f81c3e7-af0b-4ef1-98bd-e7f5761689c3.rna_seq.chimeric.gdc_realn.bam 34068459 BAM chimeric harmonized CPTAC3 040662d3-0346-43fc-a3f1-063be3253103 9567d7fd3e64d496cca3f017fa1f13d1 { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02841.RNA-Seq.genomic.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 d4ac920b-5886-4815-a49a-274136b6863d.rna_seq.genomic.gdc_realn.bam 8238685067 BAM genomic harmonized CPTAC3 c95460f8-20e9-4775-863a-f6095da35aef d9eb4fe0daa011ecccffc6bc9e171b4a { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02841.RNA-Seq.genomic.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 7f81c3e7-af0b-4ef1-98bd-e7f5761689c3.rna_seq.genomic.gdc_realn.bam 7142342945 BAM genomic harmonized CPTAC3 790cd7ef-1550-4ebc-84e1-d9f0273c0adc 085af8f9d34fe2e6f3a0621a70bab74b { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02841.RNA-Seq.R1_L004.T C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 3469919066 FASTQ R1_L004 unaligned CPTAC3 01d54fce-f4a5-47a9-9a27-ddf74b6ca8e5 c6ce8b71da37f067d1cfce7fd5ba4fcf { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02841.RNA-Seq.R1_L008.A C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 190118_UNC32-K00270_0139_AH3CHKBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3515107282 FASTQ R1_L008 unaligned CPTAC3 447373ad-15f4-4850-ba3c-1ddb67176f37 14e31b849c6a9a37b45cba3f22583c33 { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02841.RNA-Seq.R2_L004.T C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 3722604381 FASTQ R2_L004 unaligned CPTAC3 8935e95e-88af-4eaa-8c82-5b88b21674e8 f5ed52bcc03136daee7ed2d13a048dd6 { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02841.RNA-Seq.R2_L008.A C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 190118_UNC32-K00270_0139_AH3CHKBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3679801234 FASTQ R2_L008 unaligned CPTAC3 42bdd267-ddb8-49bd-b1b5-be4ea00eab1c 3bc95e418ab7c5e71efe995a02ccd45b { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02841.RNA-Seq.transcriptome.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 d4ac920b-5886-4815-a49a-274136b6863d.rna_seq.transcriptome.gdc_realn.bam 7631469590 BAM transcriptome harmonized CPTAC3 7673d382-717b-4f00-b425-6bed02a42a06 d371f56a3c20268b1ff00ebbf0556c00 { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02841.RNA-Seq.transcriptome.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 7f81c3e7-af0b-4ef1-98bd-e7f5761689c3.rna_seq.transcriptome.gdc_realn.bam 9118534653 BAM transcriptome harmonized CPTAC3 9a0a4bab-2834-46d5-a90b-bd4e231010dc 5e970d5f16784eb298bfe7c985c27cec { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02841.RNA-Seq.chimeric.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 48b220a4-fc36-4532-bbce-087836566d44.rna_seq.chimeric.gdc_realn.bam 29806171 BAM chimeric harmonized CPTAC3 98209cd8-f511-4e54-98d0-a91a51d01772 52a467f7c75f26d46df8981b1c8e7a48 { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02841.RNA-Seq.chimeric.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 6f78f97c-481b-4d4a-996d-c680fc3cb3a8.rna_seq.chimeric.gdc_realn.bam 34051767 BAM chimeric harmonized CPTAC3 fb8a1543-8c3e-4513-8c32-db453a5cc3d5 86d59a0b211b60a86419d686d574ce6f { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02841.RNA-Seq.genomic.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 48b220a4-fc36-4532-bbce-087836566d44.rna_seq.genomic.gdc_realn.bam 8239318740 BAM genomic harmonized CPTAC3 708bf3da-6066-4e58-927f-116e1b25cc86 993c4236bc4068c740d270cde63a73ab { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02841.RNA-Seq.genomic.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 6f78f97c-481b-4d4a-996d-c680fc3cb3a8.rna_seq.genomic.gdc_realn.bam 7143477463 BAM genomic harmonized CPTAC3 2b0be062-44cb-439e-b588-217817002c91 409253b1daa1c86465d5497e30635f67 { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02841.RNA-Seq.R1_L004.T C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 3469919066 FASTQ R1_L004 unaligned CPTAC3 01d54fce-f4a5-47a9-9a27-ddf74b6ca8e5 c6ce8b71da37f067d1cfce7fd5ba4fcf { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02841.RNA-Seq.R1_L008.A C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 190118_UNC32-K00270_0139_AH3CHKBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3515107282 FASTQ R1_L008 unaligned CPTAC3 447373ad-15f4-4850-ba3c-1ddb67176f37 14e31b849c6a9a37b45cba3f22583c33 { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02841.RNA-Seq.R2_L004.T C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 3722604381 FASTQ R2_L004 unaligned CPTAC3 8935e95e-88af-4eaa-8c82-5b88b21674e8 f5ed52bcc03136daee7ed2d13a048dd6 { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02841.RNA-Seq.R2_L008.A C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 190118_UNC32-K00270_0139_AH3CHKBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3679801234 FASTQ R2_L008 unaligned CPTAC3 42bdd267-ddb8-49bd-b1b5-be4ea00eab1c 3bc95e418ab7c5e71efe995a02ccd45b { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02841.RNA-Seq.transcriptome.A.hg38 C3L-02841 CCRCC RNA-Seq tissue_normal CPT0172140006 48b220a4-fc36-4532-bbce-087836566d44.rna_seq.transcriptome.gdc_realn.bam 8662194785 BAM transcriptome harmonized CPTAC3 6aee807c-6115-4dbd-b347-4a5905c71b2e 5d14a4a4c7eb3dea7551534f75ea25af { 'aliquot_tag': 'ALQ_455983ee', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02841.RNA-Seq.transcriptome.T.hg38 C3L-02841 CCRCC RNA-Seq tumor CPT0172130009 6f78f97c-481b-4d4a-996d-c680fc3cb3a8.rna_seq.transcriptome.gdc_realn.bam 10376938644 BAM transcriptome harmonized CPTAC3 25bb04e1-e955-4f27-9bfe-c311bff3a0f2 a02aaa75e41f1d857f446f0c626a73ff { 'aliquot_tag': 'ALQ_67c6426f', 'gdc_sample_type': 'Primary Tumor' } C3L-02841.WGS.N C3L-02841 CCRCC WGS blood_normal CPT0167390002 CPT0167390002.WholeGenome.RP-1303.bam 73061470291 BAM aligned CPTAC3 71903efc-bc86-4da5-b185-57dc7b96f414 b8168ac3b32b7ff8b99b360d2757eaf3 { 'aliquot_tag': 'ALQ_69fe0d74', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02841.WGS.N.hg38 C3L-02841 CCRCC WGS blood_normal CPT0167390002 91d0d200-7564-493e-8067-1a11dee04ea6_wgs_gdc_realn.bam 108598721635 BAM harmonized CPTAC3 5793de14-57c8-429c-b5af-1fa15e75b752 72029a65dbaa79e5f3b4b7e8e9794e1a { 'aliquot_tag': 'ALQ_69fe0d74', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02841.WGS.T C3L-02841 CCRCC WGS tumor CPT0172130006 CPT0172130006.WholeGenome.RP-1303.bam 61235981082 BAM aligned CPTAC3 ab37ae3b-0198-45cc-a6e2-035ac1a207da 68885fe161fa3c639aa5664361293cb3 { 'aliquot_tag': 'ALQ_f7795ffe', 'gdc_sample_type': 'Primary Tumor' } @@ -12153,16 +12956,16 @@ C3L-02842.miRNA-Seq.A C3L-02842 CCRCC miRNA-Seq tissue_normal CPT0172080009 1901 C3L-02842.miRNA-Seq.A.hg38 C3L-02842 CCRCC miRNA-Seq tissue_normal CPT0172080009 9b5ec0cd-3264-44b0-9d2a-3aa821effcf8_mirnaseq_gdc_realn.bam 173341579 BAM harmonized CPTAC3 21a9e2a8-286e-4b59-b16e-701f2ee3d097 c334a7d832dc1946b1c3644d51aad27d { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02842.miRNA-Seq.T C3L-02842 CCRCC miRNA-Seq tumor CPT0172070009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L004_R1_001.unaln.bam 277817742 BAM unaligned CPTAC3 4b0a3c57-383c-46bb-8731-2f0da8dfe2ad f28801b3be1a57eb92f46129de2dc8c0 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor' } C3L-02842.miRNA-Seq.T.hg38 C3L-02842 CCRCC miRNA-Seq tumor CPT0172070009 f9233265-2619-45cf-8db3-0f7bea172b3b_mirnaseq_gdc_realn.bam 307695074 BAM harmonized CPTAC3 fc590504-92fb-4fc1-a300-2ca658bda64f 74311be64684e416ebeed24c443fc206 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02842.RNA-Seq.chimeric.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 2389ae06-e50a-4d1c-ad5e-6ae11d56bf6e.rna_seq.chimeric.gdc_realn.bam 47027365 BAM chimeric harmonized CPTAC3 a4c28d01-7f58-439b-8e94-12ec11356135 09cbe57a0f1421b0c4eadb2d6898bd07 { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02842.RNA-Seq.chimeric.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 833cb33c-75cc-4020-9b44-1431512b044c.rna_seq.chimeric.gdc_realn.bam 39691829 BAM chimeric harmonized CPTAC3 cb196d75-5063-4941-8eb0-e6048184e6aa 27665fbf46b9758acee6212461d8f3d3 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02842.RNA-Seq.genomic.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 2389ae06-e50a-4d1c-ad5e-6ae11d56bf6e.rna_seq.genomic.gdc_realn.bam 7360222488 BAM genomic harmonized CPTAC3 e9372ba6-72d7-4312-889e-cbb53db1ec21 1cfc1f16ad8a11bf137501b5f9c0bf47 { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02842.RNA-Seq.genomic.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 833cb33c-75cc-4020-9b44-1431512b044c.rna_seq.genomic.gdc_realn.bam 7538906897 BAM genomic harmonized CPTAC3 61ea6e46-f1e1-4658-83e9-877b7eb79554 b8935f872dc5d2c733ca6d9dc8871287 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02842.RNA-Seq.R1_L004.T C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 3720502492 FASTQ R1_L004 unaligned CPTAC3 9982f9c9-86e3-44aa-9e18-8a8fcd3f7809 39a4fe47e4423507a54373e1364a2305 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02842.RNA-Seq.R1_L007.A C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 190125_UNC31-K00269_0184_AH3M32BBXY_GATCAG_S18_L007_R1_001.fastq.gz 3397109312 FASTQ R1_L007 unaligned CPTAC3 992b3f55-0b5f-465e-986b-8cb01c7bba0e ce0cb6df03db23ac8d9767b6f68ac62d { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02842.RNA-Seq.R2_L004.T C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 3959952511 FASTQ R2_L004 unaligned CPTAC3 2471fd79-72a9-4851-a843-966ed61cc81d d46cc7941897cf74f379025b09137954 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor' } -C3L-02842.RNA-Seq.R2_L007.A C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 190125_UNC31-K00269_0184_AH3M32BBXY_GATCAG_S18_L007_R2_001.fastq.gz 3571857899 FASTQ R2_L007 unaligned CPTAC3 d064b70a-12fe-4952-a3b6-1f323fb6321d f2c089f8a91e7e258a4bb1b323c61bdc { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02842.RNA-Seq.transcriptome.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 2389ae06-e50a-4d1c-ad5e-6ae11d56bf6e.rna_seq.transcriptome.gdc_realn.bam 7363998284 BAM transcriptome harmonized CPTAC3 8c569121-f2a7-4e18-8beb-df8d9c8e2af9 f40f6c09a07f06951224c9189f0d17cd { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02842.RNA-Seq.transcriptome.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 833cb33c-75cc-4020-9b44-1431512b044c.rna_seq.transcriptome.gdc_realn.bam 9027229099 BAM transcriptome harmonized CPTAC3 502e4d25-f7d8-41f7-9c51-662645ba0a04 bc99955a6b01ff18b83587f87c95b600 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02842.RNA-Seq.chimeric.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 1aa3827d-497a-4b8b-aab1-d9455b4eab8f.rna_seq.chimeric.gdc_realn.bam 47019011 BAM chimeric harmonized CPTAC3 84eb3f7a-34d2-4035-bd5b-dc6e4995b945 1375cc22b309f2392861304e090fd61c { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02842.RNA-Seq.chimeric.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 c17a88a0-d853-4bcc-8a54-b0e51ba08329.rna_seq.chimeric.gdc_realn.bam 39676476 BAM chimeric harmonized CPTAC3 f907e8c9-c890-43b1-b202-e61ac69da378 71d98b77ea0ffcc8bb92f4623e7da147 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02842.RNA-Seq.genomic.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 1aa3827d-497a-4b8b-aab1-d9455b4eab8f.rna_seq.genomic.gdc_realn.bam 7361108647 BAM genomic harmonized CPTAC3 0ed99de7-9826-432b-bac4-8f252a75a722 2358acdf9925a9a65b60ffb6080ce75a { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02842.RNA-Seq.genomic.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 c17a88a0-d853-4bcc-8a54-b0e51ba08329.rna_seq.genomic.gdc_realn.bam 7540375510 BAM genomic harmonized CPTAC3 61cce980-4eb9-4ccc-a0f9-fc2ea8d75987 071b88850e18864de04838623bc55517 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor' } +C3L-02842.RNA-Seq.R1_L004.T C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 3720502492 FASTQ R1_L004 unaligned CPTAC3 9982f9c9-86e3-44aa-9e18-8a8fcd3f7809 39a4fe47e4423507a54373e1364a2305 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02842.RNA-Seq.R1_L007.A C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 190125_UNC31-K00269_0184_AH3M32BBXY_GATCAG_S18_L007_R1_001.fastq.gz 3397109312 FASTQ R1_L007 unaligned CPTAC3 992b3f55-0b5f-465e-986b-8cb01c7bba0e ce0cb6df03db23ac8d9767b6f68ac62d { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-02842.RNA-Seq.R2_L004.T C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 3959952511 FASTQ R2_L004 unaligned CPTAC3 2471fd79-72a9-4851-a843-966ed61cc81d d46cc7941897cf74f379025b09137954 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02842.RNA-Seq.R2_L007.A C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 190125_UNC31-K00269_0184_AH3M32BBXY_GATCAG_S18_L007_R2_001.fastq.gz 3571857899 FASTQ R2_L007 unaligned CPTAC3 d064b70a-12fe-4952-a3b6-1f323fb6321d f2c089f8a91e7e258a4bb1b323c61bdc { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-02842.RNA-Seq.transcriptome.A.hg38 C3L-02842 CCRCC RNA-Seq tissue_normal CPT0172080009 1aa3827d-497a-4b8b-aab1-d9455b4eab8f.rna_seq.transcriptome.gdc_realn.bam 8412536816 BAM transcriptome harmonized CPTAC3 2b77cebb-b475-4429-8d73-e9aaea936d2f aad2a809dc8ffd167eb7f3da8464089b { 'aliquot_tag': 'ALQ_db4aa0db', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02842.RNA-Seq.transcriptome.T.hg38 C3L-02842 CCRCC RNA-Seq tumor CPT0172070009 c17a88a0-d853-4bcc-8a54-b0e51ba08329.rna_seq.transcriptome.gdc_realn.bam 10353697231 BAM transcriptome harmonized CPTAC3 c655d0dc-9c7a-4d97-b8ae-21f93a544202 02534423e541ff792713e16a0fb0ff09 { 'aliquot_tag': 'ALQ_591a370a', 'gdc_sample_type': 'Primary Tumor' } C3L-02842.WGS.A C3L-02842 CCRCC WGS tissue_normal CPT0172080006 CPT0172080006.WholeGenome.RP-1303.bam 51783724928 BAM aligned CPTAC3 8ed8c59d-a5fb-486b-b8db-70f5dedb04b8 b8829a646adc2b18ef672bd9f635f661 { 'aliquot_tag': 'ALQ_4bf5bd4a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02842.WGS.A.hg38 C3L-02842 CCRCC WGS tissue_normal CPT0172080006 f19c25ee-1228-4e75-ab14-b2bb89853fa4_wgs_gdc_realn.bam 76304620036 BAM harmonized CPTAC3 5275f29c-239d-4516-b35f-644ce2f842eb 3bae29da9646950cd347d6e27bf70b1a { 'aliquot_tag': 'ALQ_4bf5bd4a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02842.WGS.N C3L-02842 CCRCC WGS blood_normal CPT0167410002 CPT0167410002.WholeGenome.RP-1303.bam 57344887018 BAM aligned CPTAC3 21eb25a5-833f-4968-99c4-a2c3ce434938 fbec0d428f8b5aba45df17450d2ae941 { 'aliquot_tag': 'ALQ_448b760d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12179,11 +12982,11 @@ C3L-02856.MethArray.Green.T C3L-02856 CCRCC Methylation Array tumor CPT017201000 C3L-02856.MethArray.Red.T C3L-02856 CCRCC Methylation Array tumor CPT0172010006 203219670019_R04C01_Red.idat 13676232 IDAT Red NA CPTAC3 7fe9204a-9f10-4f8b-b49f-5cd21569ba39 e93dccc762d99d795cd73860ec784fd7 { 'aliquot_tag': 'ALQ_46e5df3b', 'gdc_sample_type': 'Primary Tumor' } C3L-02856.miRNA-Seq.T C3L-02856 CCRCC miRNA-Seq tumor CPT0172010009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L004_R1_001.unaln.bam 224701599 BAM unaligned CPTAC3 566f248e-f000-4f48-b825-40daab7ef0a1 e62531f807482fc220a8361857ae52c4 { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor' } C3L-02856.miRNA-Seq.T.hg38 C3L-02856 CCRCC miRNA-Seq tumor CPT0172010009 89866b63-d94b-4720-b380-3f9f27c4cc17_mirnaseq_gdc_realn.bam 248300800 BAM harmonized CPTAC3 f69b63fc-516b-46ec-8341-b8770fdc09bf 3e7034ca650f5d8e0cb1b50114d5317f { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-02856.RNA-Seq.chimeric.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 19c226e2-b31d-4a7e-bf44-b924204f1f5a.rna_seq.chimeric.gdc_realn.bam 25074528 BAM chimeric harmonized CPTAC3 f9447f95-8d0f-45e7-a969-9fccb5e7f974 940c23dbc1cb5e27e823265791f0483c { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-02856.RNA-Seq.genomic.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 19c226e2-b31d-4a7e-bf44-b924204f1f5a.rna_seq.genomic.gdc_realn.bam 6391682642 BAM genomic harmonized CPTAC3 250b8854-ad5d-425b-97b8-503c44e6d895 18a575c0b1b8afb6449d4cea55bd1b11 { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-02856.RNA-Seq.R1_L004.T C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 190123_UNC31-K00269_0183_BH3L7LBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3087194892 FASTQ R1_L004 unaligned CPTAC3 a746a03f-1a50-44a4-ada0-5f47d9a2b405 933662ba5273a8dbe59dc3aa964518a6 { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-02856.RNA-Seq.R2_L004.T C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 190123_UNC31-K00269_0183_BH3L7LBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 3343909402 FASTQ R2_L004 unaligned CPTAC3 702e2897-0c49-4b97-a837-320a7908430d 80977eeeb160efb6a0b1d53e462d8538 { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-02856.RNA-Seq.transcriptome.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 19c226e2-b31d-4a7e-bf44-b924204f1f5a.rna_seq.transcriptome.gdc_realn.bam 7939029165 BAM transcriptome harmonized CPTAC3 cc5e448d-09b5-4fee-ac04-a798576ed5ee 309353ed4cfcc118265f8705e0890c68 { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-02856.RNA-Seq.chimeric.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 838e2ddb-2f7e-4c6c-89fb-a014504ffb46.rna_seq.chimeric.gdc_realn.bam 25066005 BAM chimeric harmonized CPTAC3 15c44828-2a38-4085-b8ed-b54fd25b315c 4f9fd650dea3b216d60e1eb991568121 { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-02856.RNA-Seq.genomic.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 838e2ddb-2f7e-4c6c-89fb-a014504ffb46.rna_seq.genomic.gdc_realn.bam 6392583130 BAM genomic harmonized CPTAC3 c5b03a2c-d4fc-4da8-b823-d1360c687157 875d92a6758e783d9a02a06ccf6c8ba2 { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-02856.RNA-Seq.R1_L004.T C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 190123_UNC31-K00269_0183_BH3L7LBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3087194892 FASTQ R1_L004 unaligned CPTAC3 a746a03f-1a50-44a4-ada0-5f47d9a2b405 933662ba5273a8dbe59dc3aa964518a6 { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02856.RNA-Seq.R2_L004.T C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 190123_UNC31-K00269_0183_BH3L7LBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 3343909402 FASTQ R2_L004 unaligned CPTAC3 702e2897-0c49-4b97-a837-320a7908430d 80977eeeb160efb6a0b1d53e462d8538 { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02856.RNA-Seq.transcriptome.T.hg38 C3L-02856 CCRCC RNA-Seq tumor CPT0172010009 838e2ddb-2f7e-4c6c-89fb-a014504ffb46.rna_seq.transcriptome.gdc_realn.bam 9003440335 BAM transcriptome harmonized CPTAC3 be4b3b34-322b-4973-b506-a99ae49dd8ea aff4aec35ae0526163a5cf6873444c23 { 'aliquot_tag': 'ALQ_d65ac2aa', 'gdc_sample_type': 'Primary Tumor' } C3L-02856.WGS.N C3L-02856 CCRCC WGS blood_normal CPT0167470002 CPT0167470002.WholeGenome.RP-1303.bam 59056080805 BAM aligned CPTAC3 a372d668-dddb-41eb-9202-88cf63c5041c d3d9a5a85aee1646a7550df023bf4cba { 'aliquot_tag': 'ALQ_cbcb83ad', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02856.WGS.N.hg38 C3L-02856 CCRCC WGS blood_normal CPT0167470002 e833a430-f9c4-405f-a646-a54f3065fd43_wgs_gdc_realn.bam 85861686845 BAM harmonized CPTAC3 5d7a4913-bbc3-4732-ab0f-47c5a90cf3bf 017e68fac45289860294ac8e829bd816 { 'aliquot_tag': 'ALQ_cbcb83ad', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02856.WGS.T C3L-02856 CCRCC WGS tumor CPT0172010006 CPT0172010006.WholeGenome.RP-1303.bam 54012441219 BAM aligned CPTAC3 691b6533-911c-4dd8-8a27-8677dfc311ca 6b23bcdcdc1699814c454b764e890741 { 'aliquot_tag': 'ALQ_46e5df3b', 'gdc_sample_type': 'Primary Tumor' } @@ -12196,11 +12999,11 @@ C3L-02857.MethArray.Green.T C3L-02857 CCRCC Methylation Array tumor CPT020341000 C3L-02857.MethArray.Red.T C3L-02857 CCRCC Methylation Array tumor CPT0203410006 203219650005_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 5a60b667-f500-4a5b-aeac-edae0856036f e793f8a746a6cac4ba7a6cbab6a25dff { 'aliquot_tag': 'ALQ_484ba345', 'gdc_sample_type': 'Primary Tumor' } C3L-02857.miRNA-Seq.T C3L-02857 CCRCC miRNA-Seq tumor CPT0203410009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L008_R1_001.unaln.bam 209231424 BAM unaligned CPTAC3 6e7313a5-bbcb-4b30-b15e-e70186af716f c561d06563a2171eacb743b9bb42ef40 { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor' } C3L-02857.miRNA-Seq.T.hg38 C3L-02857 CCRCC miRNA-Seq tumor CPT0203410009 ea154adb-92e7-4d50-a983-77be2aca9795_mirnaseq_gdc_realn.bam 232256779 BAM harmonized CPTAC3 2206a5f5-219c-4294-9adf-44b09de93968 89c05114a71fd0561da8bab62c64638d { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02857.RNA-Seq.chimeric.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 0478fd22-adbf-4ad7-bf2a-a49bd9ed6bac.rna_seq.chimeric.gdc_realn.bam 361279336 BAM chimeric harmonized CPTAC3 394e4fb5-dc87-4f3c-a47a-93721c49e761 5d138d7682a04ca8ddbd6814a456cc2a { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02857.RNA-Seq.genomic.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 0478fd22-adbf-4ad7-bf2a-a49bd9ed6bac.rna_seq.genomic.gdc_realn.bam 9224307342 BAM genomic harmonized CPTAC3 fd8f66c5-52e9-4629-bfec-9d32b88d81a1 b6ede4f2e92ef9d18ed8d964a50c0954 { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02857.RNA-Seq.R1_L004.T C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L004_R1_001.fastq.gz 4101518275 FASTQ R1_L004 unaligned CPTAC3 6dd28258-5f77-4e85-9297-1d405436765a c49dccd9dfc7803c7eaa1e908dd83dbd { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02857.RNA-Seq.R2_L004.T C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L004_R2_001.fastq.gz 4549844513 FASTQ R2_L004 unaligned CPTAC3 8ab6cb44-ccad-44f8-bd2b-c957583135ce c885ed4dafe6c5fb963a7711871aea03 { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor' } -C3L-02857.RNA-Seq.transcriptome.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 0478fd22-adbf-4ad7-bf2a-a49bd9ed6bac.rna_seq.transcriptome.gdc_realn.bam 10021443269 BAM transcriptome harmonized CPTAC3 0633d613-1fe0-4c1c-a72b-bd6c70ba67af 35a8bd548ea56891802d3844f6175b84 { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02857.RNA-Seq.chimeric.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 3a70b39c-65bb-4c3a-a24a-1b02f8f56142.rna_seq.chimeric.gdc_realn.bam 361228727 BAM chimeric harmonized CPTAC3 95aa5cb9-389a-4088-a49f-36181f16ca76 fb7269168abddc56c81723b1305e758c { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02857.RNA-Seq.genomic.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 3a70b39c-65bb-4c3a-a24a-1b02f8f56142.rna_seq.genomic.gdc_realn.bam 9225835659 BAM genomic harmonized CPTAC3 56b9b3a0-1932-4c23-8999-e53bf4cd56d6 7ee4cf4f23c345f2b563641d52a0ae07 { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor' } +C3L-02857.RNA-Seq.R1_L004.T C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L004_R1_001.fastq.gz 4101518275 FASTQ R1_L004 unaligned CPTAC3 6dd28258-5f77-4e85-9297-1d405436765a c49dccd9dfc7803c7eaa1e908dd83dbd { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02857.RNA-Seq.R2_L004.T C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 190219_UNC31-K00269_0194_AH3V53BBXY_GTTTCG_S9_L004_R2_001.fastq.gz 4549844513 FASTQ R2_L004 unaligned CPTAC3 8ab6cb44-ccad-44f8-bd2b-c957583135ce c885ed4dafe6c5fb963a7711871aea03 { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02857.RNA-Seq.transcriptome.T.hg38 C3L-02857 CCRCC RNA-Seq tumor CPT0203410009 3a70b39c-65bb-4c3a-a24a-1b02f8f56142.rna_seq.transcriptome.gdc_realn.bam 11335636830 BAM transcriptome harmonized CPTAC3 12182f4c-479f-46d1-80dc-160a8f135104 09f72a870c93671381633fb6738eabeb { 'aliquot_tag': 'ALQ_d8f4bed4', 'gdc_sample_type': 'Primary Tumor' } C3L-02857.WGS.N C3L-02857 CCRCC WGS blood_normal CPT0204060002 CPT0204060002.WholeGenome.RP-1303.bam 60349604247 BAM aligned CPTAC3 5cae61e7-2224-49d3-8bb9-190e6e160b50 b74e1705c949f864a2ed0458ea8f837a { 'aliquot_tag': 'ALQ_a330c7d4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02857.WGS.N.hg38 C3L-02857 CCRCC WGS blood_normal CPT0204060002 3f93cb69-6a59-4f4a-a5f2-fe98ebf17dd0_wgs_gdc_realn.bam 88772387758 BAM harmonized CPTAC3 db2769fc-ee10-41a5-8131-5c2a8ca155b4 a40e4e6cc83a9334aea64f35fb61b946 { 'aliquot_tag': 'ALQ_a330c7d4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02857.WGS.T C3L-02857 CCRCC WGS tumor CPT0203410006 CPT0203410006.WholeGenome.RP-1303.bam 64372151386 BAM aligned CPTAC3 6fa596a4-afce-4dc1-82d4-4b4ad146a506 64168711b8662983d56fc2e98bc61712 { 'aliquot_tag': 'ALQ_484ba345', 'gdc_sample_type': 'Primary Tumor' } @@ -12213,11 +13016,11 @@ C3L-02858.MethArray.Green.T C3L-02858 CCRCC Methylation Array tumor CPT038916000 C3L-02858.MethArray.Red.T C3L-02858 CCRCC Methylation Array tumor CPT0389160006 205589730156_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 cb062325-65e5-4d62-b57c-6f1ebe268477 c5d67379471768a229e4cc7e46c8da58 { 'aliquot_tag': 'ALQ_ca48be5e', 'gdc_sample_type': 'Primary Tumor' } C3L-02858.miRNA-Seq.T C3L-02858 CCRCC miRNA-Seq tumor CPT0389160009 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTTTCG_S19_L001_R1_001.unaln.bam 270092493 BAM unaligned CPTAC3 ac3ceeed-a6a1-4c9a-b151-1e15a30cb131 593e3d2d59658c716fc536b1e8df0024 { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor' } C3L-02858.miRNA-Seq.T.hg38 C3L-02858 CCRCC miRNA-Seq tumor CPT0389160009 ca65ab18-0f28-4a2c-8aa7-5858314f5204_mirnaseq_gdc_realn.bam 295062336 BAM harmonized CPTAC3 9f20edf5-30b6-45e9-b83c-0b702bf07fc3 2a48c37a262b280e10d6cccb90ae16d0 { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor' } -C3L-02858.RNA-Seq.chimeric.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 aeef0648-6617-4f4a-b6ba-761bd3b18596.rna_seq.chimeric.gdc_realn.bam 398419075 BAM chimeric harmonized CPTAC3 355bb0d2-4f23-4c2a-9944-3025deb44653 8163bd65efac514cb6d7e2a48ba0093d { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor' } -C3L-02858.RNA-Seq.genomic.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 aeef0648-6617-4f4a-b6ba-761bd3b18596.rna_seq.genomic.gdc_realn.bam 8121542994 BAM genomic harmonized CPTAC3 f3762a8c-0dfa-478b-bc32-37ffc1d223f0 0edb62559ba8b599938fdd51a094d741 { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor' } -C3L-02858.RNA-Seq.R1_L004.T C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGTACCTT-AAGACGTC_S16_L004_R1_001.fastq.gz 3869705493 FASTQ R1_L004 unaligned CPTAC3 52d3a301-352c-448f-aad0-95a62e05dc6e 7e10c430f87c49bcddc8ff248a47c1fb { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor' } -C3L-02858.RNA-Seq.R2_L004.T C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGTACCTT-AAGACGTC_S16_L004_R2_001.fastq.gz 4315068548 FASTQ R2_L004 unaligned CPTAC3 168c8828-aaec-4ae0-9dd6-3b90f6b0972a 787169beb09d846a2719508211c584e7 { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor' } -C3L-02858.RNA-Seq.transcriptome.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 aeef0648-6617-4f4a-b6ba-761bd3b18596.rna_seq.transcriptome.gdc_realn.bam 8785754025 BAM transcriptome harmonized CPTAC3 599f90f0-0a32-4cfd-8099-0483853b6947 cee41a81afe33c237410fcf43c2bcb30 { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor' } +C3L-02858.RNA-Seq.chimeric.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 5db57ced-866c-4242-9e87-2fb1a7097a5c.rna_seq.chimeric.gdc_realn.bam 398460299 BAM chimeric harmonized CPTAC3 a6b61a06-d0a1-4d6e-bb28-2e8b45a4d3db 1e2745a55ad6072ec622ca85965c561f { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor' } +C3L-02858.RNA-Seq.genomic.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 5db57ced-866c-4242-9e87-2fb1a7097a5c.rna_seq.genomic.gdc_realn.bam 8129284436 BAM genomic harmonized CPTAC3 eef655d7-3a9a-4514-a0f1-1ac74d4b0df9 1e4031453e1f5b5e0bc00288037f637a { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor' } +C3L-02858.RNA-Seq.R1_L004.T C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGTACCTT-AAGACGTC_S16_L004_R1_001.fastq.gz 3869705493 FASTQ R1_L004 unaligned CPTAC3 52d3a301-352c-448f-aad0-95a62e05dc6e 7e10c430f87c49bcddc8ff248a47c1fb { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02858.RNA-Seq.R2_L004.T C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 210105_UNC32-K00270_0269_BHKN5MBBXY_GGTACCTT-AAGACGTC_S16_L004_R2_001.fastq.gz 4315068548 FASTQ R2_L004 unaligned CPTAC3 168c8828-aaec-4ae0-9dd6-3b90f6b0972a 787169beb09d846a2719508211c584e7 { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02858.RNA-Seq.transcriptome.T.hg38 C3L-02858 CCRCC RNA-Seq tumor CPT0389160009 5db57ced-866c-4242-9e87-2fb1a7097a5c.rna_seq.transcriptome.gdc_realn.bam 10178195314 BAM transcriptome harmonized CPTAC3 6d04e6b6-ec5e-4129-bc12-481337b9b59b 33fc2414f5d3ed294ac47a793d6cfb5a { 'aliquot_tag': 'ALQ_5af7a3cf', 'gdc_sample_type': 'Primary Tumor' } C3L-02858.WGS.N C3L-02858 CCRCC WGS blood_normal CPT0389210002 CPT0389210002.WholeGenome.RP-2158.bam 25054454450 BAM aligned CPTAC3 58c0c24c-bf68-4ca3-9218-36a0b6e30c3e de3a117e5382accea2c53d2b372e1434 { 'aliquot_tag': 'ALQ_f991d4f9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02858.WGS.N.hg38 C3L-02858 CCRCC WGS blood_normal CPT0389210002 60184fd8-1ab5-4ec8-8973-9dbd5a359d60_wgs_gdc_realn.bam 76418261666 BAM harmonized CPTAC3 abd46a96-622b-4902-9ac7-afc3318e4ccc 206e482303f2177cdca55e893127a1ae { 'aliquot_tag': 'ALQ_f991d4f9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02858.WGS.T C3L-02858 CCRCC WGS tumor CPT0389160006 CPT0389160006.WholeGenome.RP-2158.bam 24276047510 BAM aligned CPTAC3 2649a862-e3cd-47c4-a2d4-ed2ac9545f03 a91c6a97dfd03ec81dcd18d6b67321bb { 'aliquot_tag': 'ALQ_ca48be5e', 'gdc_sample_type': 'Primary Tumor' } @@ -12230,11 +13033,11 @@ C3L-02860.MethArray.Green.T C3L-02860 CCRCC Methylation Array tumor CPT038925000 C3L-02860.MethArray.Red.T C3L-02860 CCRCC Methylation Array tumor CPT0389250006 205589740002_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 a221e834-4091-4e8e-91ae-1da9efc27bbf f6d56cf2fb084f1b2f23153f90c68862 { 'aliquot_tag': 'ALQ_b7cb620', 'gdc_sample_type': 'Primary Tumor' } C3L-02860.miRNA-Seq.T C3L-02860 CCRCC miRNA-Seq tumor CPT0389250009 210111_UNC32-K00270_0270_AHJ5LKBBXY_CGTACG_S10_L001_R1_001.unaln.bam 279894472 BAM unaligned CPTAC3 a72a43f7-7df8-4d68-a365-91fd5bc909ba 1e5fa80fa870022132797edca109358b { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor' } C3L-02860.miRNA-Seq.T.hg38 C3L-02860 CCRCC miRNA-Seq tumor CPT0389250009 94a13d2b-7663-40bb-994f-696fc077ddb8_mirnaseq_gdc_realn.bam 296755766 BAM harmonized CPTAC3 83334648-84ab-428b-aee9-c3118b318b5f 1ca692610b0d7df389ac8f3c4030f6a8 { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02860.RNA-Seq.chimeric.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 0987ff72-96be-412b-9189-31073f3c1c17.rna_seq.chimeric.gdc_realn.bam 207901848 BAM chimeric harmonized CPTAC3 bde7b9f9-9139-4f09-b914-df1ce21d2f12 42e83d77bf610a13950b111573588f93 { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02860.RNA-Seq.genomic.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 0987ff72-96be-412b-9189-31073f3c1c17.rna_seq.genomic.gdc_realn.bam 6436743871 BAM genomic harmonized CPTAC3 2584c7d4-742a-4969-84a0-794a815b5179 330f29f3f55bbb5c2865001df6a4d292 { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02860.RNA-Seq.R1_L004.T C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 210105_UNC32-K00270_0269_BHKN5MBBXY_AACGTTCC-GGAGTACT_S13_L004_R1_001.fastq.gz 2933315609 FASTQ R1_L004 unaligned CPTAC3 0b222aed-7df5-42af-892a-fd96f5f1af65 725f37ecb62fff961b515afab0f40de1 { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02860.RNA-Seq.R2_L004.T C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 210105_UNC32-K00270_0269_BHKN5MBBXY_AACGTTCC-GGAGTACT_S13_L004_R2_001.fastq.gz 3295638762 FASTQ R2_L004 unaligned CPTAC3 0d342b02-6726-406a-9570-94487e8fb1d6 f471f0c505599e41763b0b8c29a680a1 { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02860.RNA-Seq.transcriptome.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 0987ff72-96be-412b-9189-31073f3c1c17.rna_seq.transcriptome.gdc_realn.bam 7194679418 BAM transcriptome harmonized CPTAC3 c95c2a17-5278-457f-b4d5-230f95be469d fd073acff16a5a93ba80f33af0361ffc { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02860.RNA-Seq.chimeric.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 65725e14-83be-4cf2-9a0a-ed8e33365bda.rna_seq.chimeric.gdc_realn.bam 207910190 BAM chimeric harmonized CPTAC3 87f24e0a-c3c8-4a5c-8a5f-ef08bb39f327 bb1c57adec6e052274f60d9c32b12538 { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02860.RNA-Seq.genomic.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 65725e14-83be-4cf2-9a0a-ed8e33365bda.rna_seq.genomic.gdc_realn.bam 6442618902 BAM genomic harmonized CPTAC3 2d251e7c-39d5-4713-9788-91b66e90f132 fe071daf52e04f28f6fd51d53fe32de0 { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02860.RNA-Seq.R1_L004.T C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 210105_UNC32-K00270_0269_BHKN5MBBXY_AACGTTCC-GGAGTACT_S13_L004_R1_001.fastq.gz 2933315609 FASTQ R1_L004 unaligned CPTAC3 0b222aed-7df5-42af-892a-fd96f5f1af65 725f37ecb62fff961b515afab0f40de1 { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02860.RNA-Seq.R2_L004.T C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 210105_UNC32-K00270_0269_BHKN5MBBXY_AACGTTCC-GGAGTACT_S13_L004_R2_001.fastq.gz 3295638762 FASTQ R2_L004 unaligned CPTAC3 0d342b02-6726-406a-9570-94487e8fb1d6 f471f0c505599e41763b0b8c29a680a1 { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02860.RNA-Seq.transcriptome.T.hg38 C3L-02860 CCRCC RNA-Seq tumor CPT0389250009 65725e14-83be-4cf2-9a0a-ed8e33365bda.rna_seq.transcriptome.gdc_realn.bam 8253067438 BAM transcriptome harmonized CPTAC3 4a929423-6eab-413b-8813-eaf1c17d4f4c 016c0bca982080a1687960c49ae0874c { 'aliquot_tag': 'ALQ_9bc3abb1', 'gdc_sample_type': 'Primary Tumor' } C3L-02860.WGS.N C3L-02860 CCRCC WGS blood_normal CPT0389300002 CPT0389300002.WholeGenome.RP-2158.bam 23099398294 BAM aligned CPTAC3 ec546f47-6a77-4084-b2d5-eda81012bc21 bceed66ace607e5869bdadbed2a302af { 'aliquot_tag': 'ALQ_fad2eec', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02860.WGS.N.hg38 C3L-02860 CCRCC WGS blood_normal CPT0389300002 67807703-4cbc-44f7-a84d-8d321c5641ff_wgs_gdc_realn.bam 70493467037 BAM harmonized CPTAC3 b7d2d778-bc89-4939-a27b-ec7242e82b81 9897310b3613d4762198b5611e508c71 { 'aliquot_tag': 'ALQ_fad2eec', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02860.WGS.T C3L-02860 CCRCC WGS tumor CPT0389250006 CPT0389250006.WholeGenome.RP-2158.bam 24287929743 BAM aligned CPTAC3 bd8d009a-411c-4cd1-8e57-d4a037698ceb 304b9ec523a95692e658c5ad1bba56d6 { 'aliquot_tag': 'ALQ_b7cb620', 'gdc_sample_type': 'Primary Tumor' } @@ -12243,31 +13046,37 @@ C3L-02860.WXS.N C3L-02860 CCRCC WXS blood_normal CPT0389300002 CPT0389300002.Who C3L-02860.WXS.N.hg38 C3L-02860 CCRCC WXS blood_normal CPT0389300002 67807703-4cbc-44f7-a84d-8d321c5641ff_wxs_gdc_realn.bam 32894905881 BAM harmonized CPTAC3 5c30e265-9ad4-4125-bca6-782cdaa692d6 902e3090c1c1f9ea7c8bc64f1e5972d8 { 'aliquot_tag': 'ALQ_fad2eec', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02860.WXS.T C3L-02860 CCRCC WXS tumor CPT0389250006 CPT0389250006.WholeExome.RP-1303.bam 20835930517 BAM aligned CPTAC3 a064e1a3-1a24-4a5f-92e0-039c82654991 b9fde77c54fcbc3c6f4d96938f6c1717 { 'aliquot_tag': 'ALQ_b7cb620', 'gdc_sample_type': 'Primary Tumor' } C3L-02860.WXS.T.hg38 C3L-02860 CCRCC WXS tumor CPT0389250006 3ddd9d82-58a5-42de-82ff-522ad4bffb4c_wxs_gdc_realn.bam 29359010818 BAM harmonized CPTAC3 425b4499-d17b-4b10-a4a0-f7e99b31e1e1 83be3cba80f31aba09e20fab88e2120b { 'aliquot_tag': 'ALQ_b7cb620', 'gdc_sample_type': 'Primary Tumor' } -C3L-02888.ANN_d41b87f7.RNA-Seq.chimeric.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 4b4ff8c9-caaf-47d3-984c-eb2d57478a09.rna_seq.chimeric.gdc_realn.bam 337369094 BAM chimeric harmonized CPTAC3 3a517d72-986e-4d36-89cf-000792e7810f f3738938e4191f1bc913540f83a492a3 { 'aliquot_tag': 'ANN_d41b87f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-02888.ANN_d41b87f7.RNA-Seq.genomic.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 4b4ff8c9-caaf-47d3-984c-eb2d57478a09.rna_seq.genomic.gdc_realn.bam 10606094332 BAM genomic harmonized CPTAC3 80e342d2-43e2-4bca-83e0-7fc3a86fb73d 3df9ff2f13f6ffcd4c11b20b8e55d0bb { 'aliquot_tag': 'ANN_d41b87f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-02888.ANN_d41b87f7.RNA-Seq.R1_L007.T C3L-02888 PDA RNA-Seq tumor CPT0166540026 200807_UNC32-K00270_0255_AHHY2WBBXY_ATTGTGAA-TGCATTGC_S9_L007_R1_001.fastq.gz 4650540759 FASTQ R1_L007 unaligned CPTAC3 393f7304-aade-4eca-bc5e-dcb06cb2346b 988ceba63796afefb5afb6d8ea608fff { 'aliquot_tag': 'ANN_d41b87f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-02888.ANN_d41b87f7.RNA-Seq.R2_L007.T C3L-02888 PDA RNA-Seq tumor CPT0166540026 200807_UNC32-K00270_0255_AHHY2WBBXY_ATTGTGAA-TGCATTGC_S9_L007_R2_001.fastq.gz 5329470624 FASTQ R2_L007 unaligned CPTAC3 b9b96461-e577-485d-b368-8f0ed1e4131b e6ce1fb6dab37e603a39e4090e1fd87e { 'aliquot_tag': 'ANN_d41b87f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-02888.ANN_d41b87f7.RNA-Seq.transcriptome.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 4b4ff8c9-caaf-47d3-984c-eb2d57478a09.rna_seq.transcriptome.gdc_realn.bam 13207848317 BAM transcriptome harmonized CPTAC3 d86157ed-47cf-436f-8654-013d41ef46a4 56cdbe87c9f65c00939b3fb1e5a91c1e { 'aliquot_tag': 'ANN_d41b87f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-02888.ANN_d41b87f7.RNA-Seq.chimeric.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 99bbe11f-97ff-4f62-9f9b-8812279b6732.rna_seq.chimeric.gdc_realn.bam 337542318 BAM chimeric harmonized CPTAC3 abaf9c8f-6aa6-44a4-a44a-5cfa3e607556 4b6bbce9dcd7904f9570e2856d5d45cf { 'aliquot_tag': 'ANN_d41b87f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-02888.ANN_d41b87f7.RNA-Seq.genomic.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 99bbe11f-97ff-4f62-9f9b-8812279b6732.rna_seq.genomic.gdc_realn.bam 10623303199 BAM genomic harmonized CPTAC3 c48344b4-6910-40f9-932e-31fc61fb8aef 512ba394ca093e74034500a7ec00c57a { 'aliquot_tag': 'ANN_d41b87f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-02888.ANN_d41b87f7.RNA-Seq.R1_L007.T C3L-02888 PDA RNA-Seq tumor CPT0166540026 200807_UNC32-K00270_0255_AHHY2WBBXY_ATTGTGAA-TGCATTGC_S9_L007_R1_001.fastq.gz 4650540759 FASTQ R1_L007 unaligned CPTAC3 393f7304-aade-4eca-bc5e-dcb06cb2346b 988ceba63796afefb5afb6d8ea608fff { 'aliquot_tag': 'ANN_d41b87f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L007' } +C3L-02888.ANN_d41b87f7.RNA-Seq.R2_L007.T C3L-02888 PDA RNA-Seq tumor CPT0166540026 200807_UNC32-K00270_0255_AHHY2WBBXY_ATTGTGAA-TGCATTGC_S9_L007_R2_001.fastq.gz 5329470624 FASTQ R2_L007 unaligned CPTAC3 b9b96461-e577-485d-b368-8f0ed1e4131b e6ce1fb6dab37e603a39e4090e1fd87e { 'aliquot_tag': 'ANN_d41b87f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L007' } +C3L-02888.ANN_d41b87f7.RNA-Seq.transcriptome.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540026 99bbe11f-97ff-4f62-9f9b-8812279b6732.rna_seq.transcriptome.gdc_realn.bam 14955729450 BAM transcriptome harmonized CPTAC3 208c9eb7-0f67-4ee8-a416-157d266175d3 dc0bee1e0c997aef2e83e4e16f40531f { 'aliquot_tag': 'ANN_d41b87f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } C3L-02888.DUP_230ed79a.WXS.T C3L-02888 PDA WXS tumor CPT0166540034 CPT0166540034.WholeExome.RP-1303.bam 22062083549 BAM aligned CPTAC3 588209ae-1be5-48f0-be31-5dae47c1bb25 496d2a7d406933be2bf71e0448f0d6b4 { 'aliquot_tag': 'DUP_230ed79a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02888.DUP_230ed79a.WXS.T.hg38 C3L-02888 PDA WXS tumor CPT0166540034 9108d26c-4d40-4d63-98e5-7666ceb9e36c_wxs_gdc_realn.bam 30987766785 BAM harmonized CPTAC3 7031786c-5582-4d21-a380-423077b3e35c 26c3f8dca88144aefaa3541ffcd37ba3 { 'aliquot_tag': 'DUP_230ed79a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02888.DUP_24b0cc6d.WXS.N C3L-02888 PDA WXS blood_normal CPT0166580002 CPT0166580002.WholeExome.RP-1303.bam 23287968778 BAM aligned CPTAC3 66795e81-fe8a-4158-88cd-60bc4b14028c f912abc76685c5bf6214d72860c09a46 { 'aliquot_tag': 'DUP_24b0cc6d', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02888.DUP_24b0cc6d.WXS.N.hg38 C3L-02888 PDA WXS blood_normal CPT0166580002 b34b281b-75d9-4342-9b38-715fb83f8bc2_wxs_gdc_realn.bam 32447372038 BAM harmonized CPTAC3 9cb4b15c-f17b-406a-b420-17e50680aa8b 92aa265ad7ce508c61adabcf80a57063 { 'aliquot_tag': 'DUP_24b0cc6d', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3L-02888.DUP_5dbfab27.RNA-Seq.chimeric.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540039 c63e88dc-0061-405b-b93a-76161ad39bda.rna_seq.chimeric.gdc_realn.bam 65556272 BAM chimeric harmonized CPTAC3 f2b71889-5dfc-4c1f-a05f-7e89e0b8c218 235b092090cdcd584186b40e444dd5d6 { 'aliquot_tag': 'DUP_5dbfab27', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-02888.DUP_5dbfab27.RNA-Seq.genomic.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540039 c63e88dc-0061-405b-b93a-76161ad39bda.rna_seq.genomic.gdc_realn.bam 7155004157 BAM genomic harmonized CPTAC3 8fad3910-942b-48f3-beed-e2cb61056130 10a860088650a7fd63a585e73195df41 { 'aliquot_tag': 'DUP_5dbfab27', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-02888.DUP_5dbfab27.RNA-Seq.R1_L005.T C3L-02888 PDA RNA-Seq tumor CPT0166540039 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3503547846 FASTQ R1_L005 unaligned CPTAC3 6bb5b4bf-eccf-4cca-9a7f-b89a0398deb6 2382f1a75e919f57e259072df2d21713 { 'aliquot_tag': 'DUP_5dbfab27', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3L-02888.DUP_5dbfab27.RNA-Seq.R2_L005.T C3L-02888 PDA RNA-Seq tumor CPT0166540039 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3829335080 FASTQ R2_L005 unaligned CPTAC3 d35f7e8f-539a-4639-a9cf-0fe318eb24c6 6db335032c16afee7a4b0d8d6412adf6 { 'aliquot_tag': 'DUP_5dbfab27', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3L-02888.DUP_5dbfab27.RNA-Seq.transcriptome.T.hg38 C3L-02888 PDA RNA-Seq tumor CPT0166540039 c63e88dc-0061-405b-b93a-76161ad39bda.rna_seq.transcriptome.gdc_realn.bam 10845991006 BAM transcriptome harmonized CPTAC3 366d3e3b-539d-4ebf-95e5-403b17b7a3d7 674d56b569352ab9825eccc404729859 { 'aliquot_tag': 'DUP_5dbfab27', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3L-02888.DUP_bd6a4239.WXS.T C3L-02888 PDA WXS tumor CPT0166540033 CPT0166540033.WholeExome.RP-1303.bam 37208515996 BAM aligned CPTAC3 0bb7e9c1-18d7-4cb5-b0a3-6ab8c886b045 085967d10db5db7c8a1f6c0f1a4f8258 { 'aliquot_tag': 'DUP_bd6a4239', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02888.DUP_bd6a4239.WXS.T.hg38 C3L-02888 PDA WXS tumor CPT0166540033 3285e42d-f066-42a4-a5b7-073132976f88_wxs_gdc_realn.bam 51339995298 BAM harmonized CPTAC3 46a34576-271e-43a3-9c02-a238ac35e02d 9e6bd6b50d14763ec2c635acf3039684 { 'aliquot_tag': 'DUP_bd6a4239', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3L-02888.DUP_c0c7d540.RNA-Seq.chimeric.A.hg38 C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 7df3ab21-feff-4aba-a805-f944b0595434.rna_seq.chimeric.gdc_realn.bam 28648617 BAM chimeric harmonized CPTAC3 823f1dcc-b8e1-4038-82fc-3a95feceab22 3b5b3f375891f7f8149bc9e73c404349 { 'aliquot_tag': 'DUP_c0c7d540', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-02888.DUP_c0c7d540.RNA-Seq.genomic.A.hg38 C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 7df3ab21-feff-4aba-a805-f944b0595434.rna_seq.genomic.gdc_realn.bam 6504658615 BAM genomic harmonized CPTAC3 6f6aaf10-f845-4ade-8c6a-590c311e8cbe cdd4c48acea5da8632392bb7f0aa90c9 { 'aliquot_tag': 'DUP_c0c7d540', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-02888.DUP_c0c7d540.RNA-Seq.R1_L008.A C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 220114_UNC32-K00270_0310_AHMWT5BBXY_ACTAAGAT-AACCGCGG_S25_L008_R1_001.fastq.gz 3069406278 FASTQ R1_L008 unaligned CPTAC3 15edeb77-4c31-4c22-9f4a-aa1f6014afd4 cbed15b22ffb86a77f11bf3e44e8551e { 'aliquot_tag': 'DUP_c0c7d540', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L008' } +C3L-02888.DUP_c0c7d540.RNA-Seq.R2_L008.A C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 220114_UNC32-K00270_0310_AHMWT5BBXY_ACTAAGAT-AACCGCGG_S25_L008_R2_001.fastq.gz 3424055467 FASTQ R2_L008 unaligned CPTAC3 119e10fb-c39b-4d79-8bda-aea21d3019d7 60a2d6531d5cc71a31955602a8e0326b { 'aliquot_tag': 'DUP_c0c7d540', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L008' } +C3L-02888.DUP_c0c7d540.RNA-Seq.transcriptome.A.hg38 C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 7df3ab21-feff-4aba-a805-f944b0595434.rna_seq.transcriptome.gdc_realn.bam 8245792712 BAM transcriptome harmonized CPTAC3 02bf94e3-fcac-476b-b416-eac687fb15c2 3d61e980192cf6090c7f7f5ccea61e49 { 'aliquot_tag': 'DUP_c0c7d540', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3L-02888.DUP_ca6d72af.WXS.T C3L-02888 PDA WXS tumor CPT0166540032 CPT0166540032.WholeExome.RP-1303.bam 24021156492 BAM aligned CPTAC3 eeada0d4-a3bd-4b98-97cd-e8fd8e8920db 501a483994d16b5a7024d66cd66b3fd1 { 'aliquot_tag': 'DUP_ca6d72af', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02888.DUP_ca6d72af.WXS.T.hg38 C3L-02888 PDA WXS tumor CPT0166540032 e7d75cba-4f43-4692-91fc-85b15c7fec47_wxs_gdc_realn.bam 33430916634 BAM harmonized CPTAC3 70c43eaa-9e3d-43ca-bca8-ffb239508b44 4ef918d16228689a87dbfe5af187fd05 { 'aliquot_tag': 'DUP_ca6d72af', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3L-02888.RNA-Seq.R1_L005.T C3L-02888 PDA RNA-Seq tumor CPT0166540039 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3503547846 FASTQ R1_L005 unaligned CPTAC3 6bb5b4bf-eccf-4cca-9a7f-b89a0398deb6 2382f1a75e919f57e259072df2d21713 { 'aliquot_tag': 'ALQ_5dbfab27', 'gdc_sample_type': 'Primary Tumor' } -C3L-02888.RNA-Seq.R1_L008.A C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 220114_UNC32-K00270_0310_AHMWT5BBXY_ACTAAGAT-AACCGCGG_S25_L008_R1_001.fastq.gz 3069406278 FASTQ R1_L008 unaligned CPTAC3 15edeb77-4c31-4c22-9f4a-aa1f6014afd4 cbed15b22ffb86a77f11bf3e44e8551e { 'aliquot_tag': 'ALQ_c0c7d540', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02888.RNA-Seq.R2_L005.T C3L-02888 PDA RNA-Seq tumor CPT0166540039 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3829335080 FASTQ R2_L005 unaligned CPTAC3 d35f7e8f-539a-4639-a9cf-0fe318eb24c6 6db335032c16afee7a4b0d8d6412adf6 { 'aliquot_tag': 'ALQ_5dbfab27', 'gdc_sample_type': 'Primary Tumor' } -C3L-02888.RNA-Seq.R2_L008.A C3L-02888 PDA RNA-Seq tissue_normal CPT0166560037 220114_UNC32-K00270_0310_AHMWT5BBXY_ACTAAGAT-AACCGCGG_S25_L008_R2_001.fastq.gz 3424055467 FASTQ R2_L008 unaligned CPTAC3 119e10fb-c39b-4d79-8bda-aea21d3019d7 60a2d6531d5cc71a31955602a8e0326b { 'aliquot_tag': 'ALQ_c0c7d540', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02890.MethArray.Green.T C3L-02890 PDA Methylation Array tumor CPT0166650009 203561620008_R06C01_Grn.idat 13676236 IDAT Green NA CPTAC3 1b3192eb-a5d8-404c-bbab-1e6a4d708b4a 993e68dbce47c4b85844f30725390bc5 { 'aliquot_tag': 'ALQ_cd66a3fa', 'gdc_sample_type': 'Primary Tumor' } C3L-02890.MethArray.Red.T C3L-02890 PDA Methylation Array tumor CPT0166650009 203561620008_R06C01_Red.idat 13676236 IDAT Red NA CPTAC3 718996ff-e713-40d7-8bdb-38c9e40a5f34 ca49d1c0b35804c29f65a2015d9e2f4b { 'aliquot_tag': 'ALQ_cd66a3fa', 'gdc_sample_type': 'Primary Tumor' } C3L-02890.miRNA-Seq.T C3L-02890 PDA miRNA-Seq tumor CPT0166650012 190712_UNC32-K00270_0192_BH7HL3BBXY_CGATGT_S25_L005_R1_001.unaln.bam 241719651 BAM unaligned CPTAC3 07e60f8e-2863-4c0d-b060-366547e9b06a 57d387208282753513576517ded1e8a6 { 'aliquot_tag': 'ALQ_43af4b33', 'gdc_sample_type': 'Primary Tumor' } C3L-02890.miRNA-Seq.T.hg38 C3L-02890 PDA miRNA-Seq tumor CPT0166650012 aa4b1d34-d650-4d6d-beb1-29960c9bde17_mirnaseq_gdc_realn.bam 272577730 BAM harmonized CPTAC3 680dc196-6446-4352-ac94-6f80f2eb2d70 04683c19d3de6f8a8779d31fa9c3475b { 'aliquot_tag': 'ALQ_43af4b33', 'gdc_sample_type': 'Primary Tumor' } C3L-02890.RNA-Seq.chimeric.T.hg38 C3L-02890 PDA RNA-Seq tumor CPT0166650012 9ef46567-8933-4455-a4c9-01342d4ed5d9.rna_seq.chimeric.gdc_realn.bam 44851168 BAM chimeric harmonized CPTAC3 c61d00ea-2066-4646-8181-4bec519c5fc3 cc42c710a7899897c4be1d8dae78457f { 'aliquot_tag': 'ALQ_43af4b33', 'gdc_sample_type': 'Primary Tumor' } -C3L-02890.RNA-Seq.genomic.T.hg38 C3L-02890 PDA RNA-Seq tumor CPT0166650012 9ef46567-8933-4455-a4c9-01342d4ed5d9.rna_seq.genomic.gdc_realn.bam 8746077767 BAM genomic harmonized CPTAC3 d1460fb6-c20f-4e0e-8c67-3b80a54263b0 90a16a4f9ea771ef5e06473f7bf1cdfd { 'aliquot_tag': 'ALQ_43af4b33', 'gdc_sample_type': 'Primary Tumor' } -C3L-02890.RNA-Seq.R1_L003.T C3L-02890 PDA RNA-Seq tumor CPT0166650012 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L003_R1_001.fastq.gz 4215019566 FASTQ R1_L003 unaligned CPTAC3 ab9a6334-5279-4b73-b145-fefb71dc16f7 a7bdce574db12f7b5675538317323bbe { 'aliquot_tag': 'ALQ_43af4b33', 'gdc_sample_type': 'Primary Tumor' } -C3L-02890.RNA-Seq.R2_L003.T C3L-02890 PDA RNA-Seq tumor CPT0166650012 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L003_R2_001.fastq.gz 4291813512 FASTQ R2_L003 unaligned CPTAC3 8c02a787-6b3d-42d6-aeac-22a8491a5b58 dba00036d74f85c8800958152cc28046 { 'aliquot_tag': 'ALQ_43af4b33', 'gdc_sample_type': 'Primary Tumor' } +C3L-02890.RNA-Seq.genomic.T.hg38 C3L-02890 PDA RNA-Seq tumor CPT0166650012 9ef46567-8933-4455-a4c9-01342d4ed5d9.rna_seq.genomic.gdc_realn.bam 8746077767 BAM genomic harmonized CPTAC3 6fb6346c-b5fd-43f7-b05b-5ff302521bda 90a16a4f9ea771ef5e06473f7bf1cdfd { 'aliquot_tag': 'ALQ_43af4b33', 'gdc_sample_type': 'Primary Tumor' } +C3L-02890.RNA-Seq.R1_L003.T C3L-02890 PDA RNA-Seq tumor CPT0166650012 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L003_R1_001.fastq.gz 4215019566 FASTQ R1_L003 unaligned CPTAC3 ab9a6334-5279-4b73-b145-fefb71dc16f7 a7bdce574db12f7b5675538317323bbe { 'aliquot_tag': 'ALQ_43af4b33', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02890.RNA-Seq.R2_L003.T C3L-02890 PDA RNA-Seq tumor CPT0166650012 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L003_R2_001.fastq.gz 4291813512 FASTQ R2_L003 unaligned CPTAC3 8c02a787-6b3d-42d6-aeac-22a8491a5b58 dba00036d74f85c8800958152cc28046 { 'aliquot_tag': 'ALQ_43af4b33', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-02890.RNA-Seq.transcriptome.T.hg38 C3L-02890 PDA RNA-Seq tumor CPT0166650012 9ef46567-8933-4455-a4c9-01342d4ed5d9.rna_seq.transcriptome.gdc_realn.bam 10948730597 BAM transcriptome harmonized CPTAC3 e831aee2-8983-4e61-9cdf-21f7af182cfb e00e5d3e9cbd6c45879da39c098330a2 { 'aliquot_tag': 'ALQ_43af4b33', 'gdc_sample_type': 'Primary Tumor' } C3L-02890.Targeted.T C3L-02890 PDA Targeted Sequencing tumor CPT0166650009 CPT0166650009.CustomSelection.RP-1303.PDO-18786.bam 4247718728 BAM aligned CPTAC3 1b8ec7a3-4af2-4431-8f2f-1977381cf5a3 eb9b55b8a6166c1887d39c9b9e77c2ed { 'aliquot_tag': 'ALQ_cd66a3fa', 'gdc_sample_type': 'Primary Tumor' } C3L-02890.Targeted.T.hg38 C3L-02890 PDA Targeted Sequencing tumor CPT0166650009 348499bf-d9cb-4bc4-baa4-7b72b3f62956_targetedsequencing_gdc_realn.bam 5890530749 BAM harmonized CPTAC3 6e4ee43c-12f1-4260-ba13-e084f20c8cbe 4000e79fbecbdbfa52a675ab98ce063f { 'aliquot_tag': 'ALQ_cd66a3fa', 'gdc_sample_type': 'Primary Tumor' } @@ -12289,12 +13098,12 @@ C3L-02891.miRNA-Seq.T C3L-02891 LSCC miRNA-Seq tumor CPT0218280009 190206_UNC31- C3L-02891.miRNA-Seq.T.hg38 C3L-02891 LSCC miRNA-Seq tumor CPT0218280009 1df12bc0-d937-45bf-81bd-37253256e37d_mirnaseq_gdc_realn.bam 169162035 BAM harmonized CPTAC3 fc5bfe8f-b3c8-49f9-a777-e239fd5cbea4 5fb312e8702ce040bf953bb0257ff64c { 'aliquot_tag': 'ALQ_cd106bdc', 'gdc_sample_type': 'Primary Tumor' } C3L-02891.RNA-Seq.chimeric.A.hg38 C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 eb5c03e0-3db9-4698-870f-86e6cf1f75b1.rna_seq.chimeric.gdc_realn.bam 282378656 BAM chimeric harmonized CPTAC3 0976a85f-ed4f-4252-ac3f-981fad015e8f b7d4cc8e1149695c7a3d8c7c9b7b06b7 { 'aliquot_tag': 'ALQ_b5cda08', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02891.RNA-Seq.chimeric.T.hg38 C3L-02891 LSCC RNA-Seq tumor CPT0218280009 af9640f4-98e8-4c85-b1c5-0f3064e978fc.rna_seq.chimeric.gdc_realn.bam 107298106 BAM chimeric harmonized CPTAC3 354cf9f2-4de7-4654-8f7c-3b5de6c4c1f5 ea599a53aeda41e9aed3889d6eb14a0c { 'aliquot_tag': 'ALQ_cd106bdc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02891.RNA-Seq.genomic.A.hg38 C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 eb5c03e0-3db9-4698-870f-86e6cf1f75b1.rna_seq.genomic.gdc_realn.bam 9236498318 BAM genomic harmonized CPTAC3 d5b48f03-3bbf-4546-9f18-9b66740cf4ee 1472278fb567426ca7cbfc87e9364c0e { 'aliquot_tag': 'ALQ_b5cda08', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02891.RNA-Seq.genomic.T.hg38 C3L-02891 LSCC RNA-Seq tumor CPT0218280009 af9640f4-98e8-4c85-b1c5-0f3064e978fc.rna_seq.genomic.gdc_realn.bam 9651914072 BAM genomic harmonized CPTAC3 3632cb04-260d-4374-89e4-4d60873c1a28 c249657aef1b2aa62c902b2e7a8869b9 { 'aliquot_tag': 'ALQ_cd106bdc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02891.RNA-Seq.R1_L002.A C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4290807357 FASTQ R1_L002 unaligned CPTAC3 5951182e-3ce1-4d4d-84b2-eb78eb0e0908 cc923261ceb1e03cef4f8c5c80917235 { 'aliquot_tag': 'ALQ_b5cda08', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02891.RNA-Seq.R1_L007.T C3L-02891 LSCC RNA-Seq tumor CPT0218280009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L007_R1_001.fastq.gz 4392988389 FASTQ R1_L007 unaligned CPTAC3 b0f21b06-17fa-472d-bf5a-d1a189bfc5c0 9d777a70e1fe574df9a55423734b27fe { 'aliquot_tag': 'ALQ_cd106bdc', 'gdc_sample_type': 'Primary Tumor' } -C3L-02891.RNA-Seq.R2_L002.A C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4872579534 FASTQ R2_L002 unaligned CPTAC3 23f45e4a-71ff-426b-80dd-7f5868be3ccc 7a47d37830d1cd2d54446948a357d5c7 { 'aliquot_tag': 'ALQ_b5cda08', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02891.RNA-Seq.R2_L007.T C3L-02891 LSCC RNA-Seq tumor CPT0218280009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L007_R2_001.fastq.gz 4925447728 FASTQ R2_L007 unaligned CPTAC3 166ac5f0-39f7-4759-a536-41c0147bb70a c8730730b85130c333641fbd3d63a958 { 'aliquot_tag': 'ALQ_cd106bdc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02891.RNA-Seq.genomic.A.hg38 C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 eb5c03e0-3db9-4698-870f-86e6cf1f75b1.rna_seq.genomic.gdc_realn.bam 9236498318 BAM genomic harmonized CPTAC3 602095f5-f29c-4a35-8b38-80d49cc17617 1472278fb567426ca7cbfc87e9364c0e { 'aliquot_tag': 'ALQ_b5cda08', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02891.RNA-Seq.genomic.T.hg38 C3L-02891 LSCC RNA-Seq tumor CPT0218280009 af9640f4-98e8-4c85-b1c5-0f3064e978fc.rna_seq.genomic.gdc_realn.bam 9651914072 BAM genomic harmonized CPTAC3 5585b1f7-09cd-42c5-9578-a0fad70ff45d c249657aef1b2aa62c902b2e7a8869b9 { 'aliquot_tag': 'ALQ_cd106bdc', 'gdc_sample_type': 'Primary Tumor' } +C3L-02891.RNA-Seq.R1_L002.A C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4290807357 FASTQ R1_L002 unaligned CPTAC3 5951182e-3ce1-4d4d-84b2-eb78eb0e0908 cc923261ceb1e03cef4f8c5c80917235 { 'aliquot_tag': 'ALQ_b5cda08', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-02891.RNA-Seq.R1_L007.T C3L-02891 LSCC RNA-Seq tumor CPT0218280009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L007_R1_001.fastq.gz 4392988389 FASTQ R1_L007 unaligned CPTAC3 b0f21b06-17fa-472d-bf5a-d1a189bfc5c0 9d777a70e1fe574df9a55423734b27fe { 'aliquot_tag': 'ALQ_cd106bdc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02891.RNA-Seq.R2_L002.A C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4872579534 FASTQ R2_L002 unaligned CPTAC3 23f45e4a-71ff-426b-80dd-7f5868be3ccc 7a47d37830d1cd2d54446948a357d5c7 { 'aliquot_tag': 'ALQ_b5cda08', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-02891.RNA-Seq.R2_L007.T C3L-02891 LSCC RNA-Seq tumor CPT0218280009 190205_UNC32-K00270_0144_BH3M3NBBXY_GAGTGG_S8_L007_R2_001.fastq.gz 4925447728 FASTQ R2_L007 unaligned CPTAC3 166ac5f0-39f7-4759-a536-41c0147bb70a c8730730b85130c333641fbd3d63a958 { 'aliquot_tag': 'ALQ_cd106bdc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-02891.RNA-Seq.transcriptome.A.hg38 C3L-02891 LSCC RNA-Seq tissue_normal CPT0218310009 eb5c03e0-3db9-4698-870f-86e6cf1f75b1.rna_seq.transcriptome.gdc_realn.bam 10695601540 BAM transcriptome harmonized CPTAC3 ace8c0a0-800e-4a1a-9b3d-9ed830181f13 c1e21f55ce34178f8151e7451aa9de18 { 'aliquot_tag': 'ALQ_b5cda08', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02891.RNA-Seq.transcriptome.T.hg38 C3L-02891 LSCC RNA-Seq tumor CPT0218280009 af9640f4-98e8-4c85-b1c5-0f3064e978fc.rna_seq.transcriptome.gdc_realn.bam 10375318535 BAM transcriptome harmonized CPTAC3 43818c5f-c4e3-4268-b0cc-8c9a38443eab 23a4543a54384afb28b1c909350f10d9 { 'aliquot_tag': 'ALQ_cd106bdc', 'gdc_sample_type': 'Primary Tumor' } C3L-02891.WGS.A C3L-02891 LSCC WGS tissue_normal CPT0218310006 CPT0218310006.WholeGenome.RP-1303.bam 57004135378 BAM aligned CPTAC3 743a4792-55f4-4821-b2a6-e7aff024cdfe 5dbbcdc3e67e5dba9ce48597e2517dbd { 'aliquot_tag': 'ALQ_9be3c799', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -12317,16 +13126,16 @@ C3L-02893.miRNA-Seq.A C3L-02893 LUAD miRNA-Seq tissue_normal CPT0197040009 19071 C3L-02893.miRNA-Seq.A.hg38 C3L-02893 LUAD miRNA-Seq tissue_normal CPT0197040009 273a4b23-0d7b-40e8-9b78-243b48c2adf0_mirnaseq_gdc_realn.bam 265584575 BAM harmonized CPTAC3 79741339-4f59-4eeb-b9b0-8a4b3d33dfe7 2e398e3a592c9f4a0b4520ccd1fcce9d { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02893.miRNA-Seq.T C3L-02893 LUAD miRNA-Seq tumor CPT0197030009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTTCC_S10_L005_R1_001.unaln.bam 201485904 BAM unaligned CPTAC3 bb2849a7-2deb-4aed-a6b0-4c9dad4a4e05 8fe9530e9fc43f6ae99b6cecba09d17b { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor' } C3L-02893.miRNA-Seq.T.hg38 C3L-02893 LUAD miRNA-Seq tumor CPT0197030009 80f94f24-6539-4048-ba7e-c60149ac7579_mirnaseq_gdc_realn.bam 220281377 BAM harmonized CPTAC3 2fd1afbc-3365-4184-a7b9-f44788b23fa3 efcf5f8ac598aeba4fb851297f618d2e { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02893.RNA-Seq.chimeric.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 92eb4294-d4da-4da2-9c75-08a4fa5bb802.rna_seq.chimeric.gdc_realn.bam 36346911 BAM chimeric harmonized CPTAC3 cf765f26-49b5-4dfd-a3ab-6488e46a9628 72640fbed89c172b6181ab58c29169c4 { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02893.RNA-Seq.chimeric.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 cd9e3699-ff30-4ab3-a2aa-2ee9334565fd.rna_seq.chimeric.gdc_realn.bam 38281785 BAM chimeric harmonized CPTAC3 1f584f3c-e473-47ac-9c42-08b03a00a1d3 9b8247a4c175da3624e158f5b9aa1ed0 { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02893.RNA-Seq.genomic.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 92eb4294-d4da-4da2-9c75-08a4fa5bb802.rna_seq.genomic.gdc_realn.bam 11794169593 BAM genomic harmonized CPTAC3 f325ee5f-ec62-44c0-ae25-eb9157e34316 3b1cc27dae065b458a4938a4fb4933fb { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02893.RNA-Seq.genomic.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 cd9e3699-ff30-4ab3-a2aa-2ee9334565fd.rna_seq.genomic.gdc_realn.bam 12113702496 BAM genomic harmonized CPTAC3 0c179ce1-f55f-4f1e-a911-bcbe7dd02b79 45c60d0c9cdf166a8899500a1e25cb0b { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02893.RNA-Seq.R1_L003.T C3L-02893 LUAD RNA-Seq tumor CPT0197030009 190607_UNC32-K00270_0179_BH75W2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R1_001.fastq.gz 4192935120 FASTQ R1_L003 unaligned CPTAC3 ad7c89e3-6405-4975-87c7-d37f2aa9afad 3faa299ef8feba841a663b47df1d6e5f { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02893.RNA-Seq.R1_L008.A C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 190614_UNC32-K00270_0182_BH7777BBXY_GGACTTGG-CGCAGACG_S32_L008_R1_001.fastq.gz 3681804501 FASTQ R1_L008 unaligned CPTAC3 27cb8b36-6d3a-4705-b147-54505536dae9 09fe8e4caf7efcdcc0358343d440f400 { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02893.RNA-Seq.R2_L003.T C3L-02893 LUAD RNA-Seq tumor CPT0197030009 190607_UNC32-K00270_0179_BH75W2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R2_001.fastq.gz 4692968950 FASTQ R2_L003 unaligned CPTAC3 91ec17ab-f883-4958-b539-aa19e60d5d4c 091363e704beeb95b19b0155a5333d3e { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02893.RNA-Seq.R2_L008.A C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 190614_UNC32-K00270_0182_BH7777BBXY_GGACTTGG-CGCAGACG_S32_L008_R2_001.fastq.gz 4034277471 FASTQ R2_L008 unaligned CPTAC3 e42baa71-96d7-41c4-ab72-b8b5367127ed 6c87b4e37ec2fa82d085f0c259a97de7 { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02893.RNA-Seq.transcriptome.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 92eb4294-d4da-4da2-9c75-08a4fa5bb802.rna_seq.transcriptome.gdc_realn.bam 7129763162 BAM transcriptome harmonized CPTAC3 a179dc06-6fd9-4361-9435-f110933a6fe0 dbed6f1025aa2519d3678430e8a9a11f { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02893.RNA-Seq.transcriptome.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 cd9e3699-ff30-4ab3-a2aa-2ee9334565fd.rna_seq.transcriptome.gdc_realn.bam 8411194414 BAM transcriptome harmonized CPTAC3 214ea578-a713-44fc-a80e-9d4ec014d828 237674cb8ee4c76a664eb0d134585c09 { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02893.RNA-Seq.chimeric.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 f60fad1e-b00b-4f3e-8f2a-d63136f7c821.rna_seq.chimeric.gdc_realn.bam 36319593 BAM chimeric harmonized CPTAC3 6a90eab0-7955-46cd-a94c-2a2a78f76ec7 a91869ba5184fe76463b257f4b8d7ec9 { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02893.RNA-Seq.chimeric.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 c96f60cc-620f-4ab6-a8dd-761c48965788.rna_seq.chimeric.gdc_realn.bam 38274422 BAM chimeric harmonized CPTAC3 f76634b4-e2b2-4d5a-9bf1-588080b4ba37 b9b83df2044d2fbc7961f98fd7960846 { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02893.RNA-Seq.genomic.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 f60fad1e-b00b-4f3e-8f2a-d63136f7c821.rna_seq.genomic.gdc_realn.bam 11799065200 BAM genomic harmonized CPTAC3 97d33e73-e5b7-43f1-a507-4f652e3d9aa7 330a11a1fda80711019d9d52f37b1a05 { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02893.RNA-Seq.genomic.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 c96f60cc-620f-4ab6-a8dd-761c48965788.rna_seq.genomic.gdc_realn.bam 12114449049 BAM genomic harmonized CPTAC3 1724b857-e426-4831-8427-9180ef0f03a1 75a15d0fcf6525d2ac34af1c5b31b28a { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02893.RNA-Seq.R1_L003.T C3L-02893 LUAD RNA-Seq tumor CPT0197030009 190607_UNC32-K00270_0179_BH75W2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R1_001.fastq.gz 4192935120 FASTQ R1_L003 unaligned CPTAC3 ad7c89e3-6405-4975-87c7-d37f2aa9afad 3faa299ef8feba841a663b47df1d6e5f { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02893.RNA-Seq.R1_L008.A C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 190614_UNC32-K00270_0182_BH7777BBXY_GGACTTGG-CGCAGACG_S32_L008_R1_001.fastq.gz 3681804501 FASTQ R1_L008 unaligned CPTAC3 27cb8b36-6d3a-4705-b147-54505536dae9 09fe8e4caf7efcdcc0358343d440f400 { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02893.RNA-Seq.R2_L003.T C3L-02893 LUAD RNA-Seq tumor CPT0197030009 190607_UNC32-K00270_0179_BH75W2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R2_001.fastq.gz 4692968950 FASTQ R2_L003 unaligned CPTAC3 91ec17ab-f883-4958-b539-aa19e60d5d4c 091363e704beeb95b19b0155a5333d3e { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02893.RNA-Seq.R2_L008.A C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 190614_UNC32-K00270_0182_BH7777BBXY_GGACTTGG-CGCAGACG_S32_L008_R2_001.fastq.gz 4034277471 FASTQ R2_L008 unaligned CPTAC3 e42baa71-96d7-41c4-ab72-b8b5367127ed 6c87b4e37ec2fa82d085f0c259a97de7 { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02893.RNA-Seq.transcriptome.A.hg38 C3L-02893 LUAD RNA-Seq tissue_normal CPT0197040009 f60fad1e-b00b-4f3e-8f2a-d63136f7c821.rna_seq.transcriptome.gdc_realn.bam 8041324250 BAM transcriptome harmonized CPTAC3 aeaca61b-1550-4d72-af24-bb3ae42a5b9f 5cb9b62995fa88c679ab3bfcd8ba6eb4 { 'aliquot_tag': 'ALQ_5908704f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02893.RNA-Seq.transcriptome.T.hg38 C3L-02893 LUAD RNA-Seq tumor CPT0197030009 c96f60cc-620f-4ab6-a8dd-761c48965788.rna_seq.transcriptome.gdc_realn.bam 9500830299 BAM transcriptome harmonized CPTAC3 2ef3810e-0f6f-4fc5-8371-7a0bba2ad3e9 07a00379c670c0dcc71f2410030638c7 { 'aliquot_tag': 'ALQ_eb28ac5f', 'gdc_sample_type': 'Primary Tumor' } C3L-02893.WGS.N C3L-02893 LUAD WGS blood_normal CPT0197820002 CPT0197820002.WholeGenome.RP-1303.bam 76283892427 BAM aligned CPTAC3 ebe7bc8d-2c60-4b81-89b5-a96617b1fa2a cb19d17e57620afc5559b06d028cca41 { 'aliquot_tag': 'ALQ_adc9de0a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02893.WGS.N.hg38 C3L-02893 LUAD WGS blood_normal CPT0197820002 82551fd4-96fd-4a18-9f23-2564f03cfb37_wgs_gdc_realn.bam 111472479929 BAM harmonized CPTAC3 a124bff4-c42b-4663-9d6d-ec17825afdcf 649deccfd2896fb2dba95d04da57a4d5 { 'aliquot_tag': 'ALQ_adc9de0a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02893.WGS.T C3L-02893 LUAD WGS tumor CPT0197030006 CPT0197030006.WholeGenome.RP-1303.bam 58952130523 BAM aligned CPTAC3 4c37f9fc-f477-4444-bf08-87699214903b 0292f6cbd0020e3d2602a3cb827b0504 { 'aliquot_tag': 'ALQ_7b97b1ce', 'gdc_sample_type': 'Primary Tumor' } @@ -12341,15 +13150,21 @@ C3L-02894.MethArray.Green.T C3L-02894 UCEC Methylation Array tumor CPT0196790007 C3L-02894.MethArray.Red.T C3L-02894 UCEC Methylation Array tumor CPT0196790007 203561450100_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 66dd59fc-ffec-44b4-a40e-f3b4daa3ae19 875736a4574dc5e2a468f1d154b930b3 { 'aliquot_tag': 'ALQ_fd52a2f5', 'gdc_sample_type': 'Primary Tumor' } C3L-02894.miRNA-Seq.T C3L-02894 UCEC miRNA-Seq tumor CPT0196790010 190508_UNC31-K00269_0215_BH7FYKBBXY_CGTACG_S22_L004_R1_001.unaln.bam 150901424 BAM unaligned CPTAC3 fe3131b9-7f71-479d-8ca7-eb9c9a3d205e 12e613492a4588fb83960a59e9bc962f { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor' } C3L-02894.miRNA-Seq.T.hg38 C3L-02894 UCEC miRNA-Seq tumor CPT0196790010 8e3b7a7b-46ac-49fc-9483-6cd433a9035c_mirnaseq_gdc_realn.bam 172933657 BAM harmonized CPTAC3 9886acbe-1991-4e76-9170-81ec13498d84 fb25def2e9c0c46d5afc975c7fc7d117 { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor' } -C3L-02894.RNA-Seq.chimeric.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 26b2b079-8633-4da2-8f89-815c36d1bd72.rna_seq.chimeric.gdc_realn.bam 41750215 BAM chimeric harmonized CPTAC3 0a39c9cb-e9f7-4dc6-ba61-c86d6f4dfb24 2e00f1b3f86acbff5b7f1f8f64da9fc3 { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor' } -C3L-02894.RNA-Seq.genomic.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 26b2b079-8633-4da2-8f89-815c36d1bd72.rna_seq.genomic.gdc_realn.bam 8812893280 BAM genomic harmonized CPTAC3 3567fbc8-9636-48d3-9abb-0eaa1f753534 781a59cf2c9753db9491cc4d92cfae0e { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor' } -C3L-02894.RNA-Seq.R1_L005.T C3L-02894 UCEC RNA-Seq tumor CPT0196790010 190523_UNC32-K00270_0176_BH7CW7BBXY_ATTGTGAA-TGCATTGC_S18_L005_R1_001.fastq.gz 4192440536 FASTQ R1_L005 unaligned CPTAC3 c03f6fe2-58c2-41d6-b026-4446e8439f88 84b0e6be794705bdb4d0c26bd8ace9ae { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor' } -C3L-02894.RNA-Seq.R1_.T C3L-02894 UCEC RNA-Seq tumor CPT0350260001 20210714_P1_A1_WB7988_plate1_S1_R1_001.fastq.gz 5694982378 FASTQ R1_ unaligned CPTAC3 6f34cc4c-5d4a-4901-a9a1-3b29a8f762dd 6b381ee7206ed9f33c66d6f44c87e081 { 'aliquot_tag': 'ALQ_dc250951', 'gdc_sample_type': 'Primary Tumor' } -C3L-02894.RNA-Seq.R1_.T C3L-02894 UCEC RNA-Seq tumor CPT0350260003 20210729_P3_F11_WB7988-Plate3_S71_R1_001.fastq.gz 8109773430 FASTQ R1_ unaligned CPTAC3 50594872-be0d-4dc4-8991-e4152860c955 0f84fa4216c3df8993aac1d8b5b21c63 { 'aliquot_tag': 'ALQ_322b687d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02894.RNA-Seq.R2_L005.T C3L-02894 UCEC RNA-Seq tumor CPT0196790010 190523_UNC32-K00270_0176_BH7CW7BBXY_ATTGTGAA-TGCATTGC_S18_L005_R2_001.fastq.gz 4741578598 FASTQ R2_L005 unaligned CPTAC3 3b648a60-c5d5-454e-92c1-c1e23588fff3 2dc404f9513209d38bfbe02a36c7b665 { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor' } -C3L-02894.RNA-Seq.R2_.T C3L-02894 UCEC RNA-Seq tumor CPT0350260001 20210714_P1_A1_WB7988_plate1_S1_R2_001.fastq.gz 5897358182 FASTQ R2_ unaligned CPTAC3 abf9cdf8-9a49-471d-b5c1-50878e1cfa4e d1da2bb0dfdd8e55d50dc52c1406f694 { 'aliquot_tag': 'ALQ_dc250951', 'gdc_sample_type': 'Primary Tumor' } -C3L-02894.RNA-Seq.R2_.T C3L-02894 UCEC RNA-Seq tumor CPT0350260003 20210729_P3_F11_WB7988-Plate3_S71_R2_001.fastq.gz 8435403023 FASTQ R2_ unaligned CPTAC3 84951194-9d7d-422e-8572-c27d05daa703 32d0e6b3d16d62d0f5924002d04870ea { 'aliquot_tag': 'ALQ_322b687d', 'gdc_sample_type': 'Primary Tumor' } -C3L-02894.RNA-Seq.transcriptome.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 26b2b079-8633-4da2-8f89-815c36d1bd72.rna_seq.transcriptome.gdc_realn.bam 8928282088 BAM transcriptome harmonized CPTAC3 13cd9c57-862b-4339-80f7-ec601ca73a83 c7a60195bcfc06eee409cf6c70ea5208 { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor' } +C3L-02894.RNA-Seq.chimeric.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 ade953bc-40b3-4677-ac6b-2380b7dfb5d5.rna_seq.chimeric.gdc_realn.bam 41743867 BAM chimeric harmonized CPTAC3 2768da46-3068-4841-8ba5-00d667372572 9f5bd964c40b0feb40cd4f7a509cc323 { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor' } +C3L-02894.RNA-Seq.chimeric.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260001 2339f993-1ef0-4e66-a364-00986e04bbd7.rna_seq.chimeric.gdc_realn.bam 182318624 BAM chimeric harmonized CPTAC3 0efad8be-7bd2-4c22-a93a-4b1614ca2331 46cb153570b147346c3dcd4a39965f76 { 'aliquot_tag': 'ALQ_dc250951', 'gdc_sample_type': 'Primary Tumor' } +C3L-02894.RNA-Seq.chimeric.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260003 ad66fbe6-4f32-4ecc-9f9f-21495b27e9e7.rna_seq.chimeric.gdc_realn.bam 278995891 BAM chimeric harmonized CPTAC3 fb8ca07a-1222-47a5-b16e-d6d312e36df5 afd4821339a50337badcbc83a37946da { 'aliquot_tag': 'ALQ_322b687d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02894.RNA-Seq.genomic.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 ade953bc-40b3-4677-ac6b-2380b7dfb5d5.rna_seq.genomic.gdc_realn.bam 8814091543 BAM genomic harmonized CPTAC3 febfabba-2bf6-4834-8a40-39745fea9e16 f4840ed201713251713c07f9abfc81f7 { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor' } +C3L-02894.RNA-Seq.genomic.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260001 2339f993-1ef0-4e66-a364-00986e04bbd7.rna_seq.genomic.gdc_realn.bam 9400060395 BAM genomic harmonized CPTAC3 00a4bfc6-9600-49d5-9206-b99cbb1cc784 c6d069ca51bc77489bf6e01e691d5878 { 'aliquot_tag': 'ALQ_dc250951', 'gdc_sample_type': 'Primary Tumor' } +C3L-02894.RNA-Seq.genomic.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260003 ad66fbe6-4f32-4ecc-9f9f-21495b27e9e7.rna_seq.genomic.gdc_realn.bam 13306451306 BAM genomic harmonized CPTAC3 0bbde467-7463-4796-9e00-10af0573e2f5 b4a03bfc6a5d0bad3b57d8a199d80323 { 'aliquot_tag': 'ALQ_322b687d', 'gdc_sample_type': 'Primary Tumor' } +C3L-02894.RNA-Seq.R1_L005.T C3L-02894 UCEC RNA-Seq tumor CPT0196790010 190523_UNC32-K00270_0176_BH7CW7BBXY_ATTGTGAA-TGCATTGC_S18_L005_R1_001.fastq.gz 4192440536 FASTQ R1_L005 unaligned CPTAC3 c03f6fe2-58c2-41d6-b026-4446e8439f88 84b0e6be794705bdb4d0c26bd8ace9ae { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02894.RNA-Seq.R2_L005.T C3L-02894 UCEC RNA-Seq tumor CPT0196790010 190523_UNC32-K00270_0176_BH7CW7BBXY_ATTGTGAA-TGCATTGC_S18_L005_R2_001.fastq.gz 4741578598 FASTQ R2_L005 unaligned CPTAC3 3b648a60-c5d5-454e-92c1-c1e23588fff3 2dc404f9513209d38bfbe02a36c7b665 { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-02894.RNA-Seq.T C3L-02894 UCEC RNA-Seq tumor CPT0350260001 20210714_P1_A1_WB7988_plate1_S1_R1_001.fastq.gz 5694982378 FASTQ unaligned CPTAC3 6f34cc4c-5d4a-4901-a9a1-3b29a8f762dd 6b381ee7206ed9f33c66d6f44c87e081 +C3L-02894.RNA-Seq.T C3L-02894 UCEC RNA-Seq tumor CPT0350260001 20210714_P1_A1_WB7988_plate1_S1_R2_001.fastq.gz 5897358182 FASTQ unaligned CPTAC3 abf9cdf8-9a49-471d-b5c1-50878e1cfa4e d1da2bb0dfdd8e55d50dc52c1406f694 +C3L-02894.RNA-Seq.T C3L-02894 UCEC RNA-Seq tumor CPT0350260003 20210729_P3_F11_WB7988-Plate3_S71_R1_001.fastq.gz 8109773430 FASTQ unaligned CPTAC3 50594872-be0d-4dc4-8991-e4152860c955 0f84fa4216c3df8993aac1d8b5b21c63 +C3L-02894.RNA-Seq.T C3L-02894 UCEC RNA-Seq tumor CPT0350260003 20210729_P3_F11_WB7988-Plate3_S71_R2_001.fastq.gz 8435403023 FASTQ unaligned CPTAC3 84951194-9d7d-422e-8572-c27d05daa703 32d0e6b3d16d62d0f5924002d04870ea +C3L-02894.RNA-Seq.transcriptome.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0196790010 ade953bc-40b3-4677-ac6b-2380b7dfb5d5.rna_seq.transcriptome.gdc_realn.bam 10129372511 BAM transcriptome harmonized CPTAC3 b9978377-ddc1-41db-945a-796d893ea2bb 30feab158efbdb2cd1ccd79d2e39be2c { 'aliquot_tag': 'ALQ_7a2d0617', 'gdc_sample_type': 'Primary Tumor' } +C3L-02894.RNA-Seq.transcriptome.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260001 2339f993-1ef0-4e66-a364-00986e04bbd7.rna_seq.transcriptome.gdc_realn.bam 5372786742 BAM transcriptome harmonized CPTAC3 204891be-43eb-41fe-b25e-c077ad07e3f6 33ee8fbaafef433a6b430135606f2acc { 'aliquot_tag': 'ALQ_dc250951', 'gdc_sample_type': 'Primary Tumor' } +C3L-02894.RNA-Seq.transcriptome.T.hg38 C3L-02894 UCEC RNA-Seq tumor CPT0350260003 ad66fbe6-4f32-4ecc-9f9f-21495b27e9e7.rna_seq.transcriptome.gdc_realn.bam 7783565384 BAM transcriptome harmonized CPTAC3 9f09415f-bb9c-4f47-952b-58796814ed44 2ec5c12b3fdec8e7a7a5990dc498c9a5 { 'aliquot_tag': 'ALQ_322b687d', 'gdc_sample_type': 'Primary Tumor' } C3L-02894.WGS.N C3L-02894 UCEC WGS blood_normal CPT0197780002 CPT0197780002.WholeGenome.RP-1303.bam 68346330482 BAM aligned CPTAC3 2aad0b90-79ec-45bf-9905-a9473668bf6c afda16e239f52a157044096025f75cb2 { 'aliquot_tag': 'ALQ_162f747e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02894.WGS.N.hg38 C3L-02894 UCEC WGS blood_normal CPT0197780002 08fe61b1-a4ad-4176-bb16-0c9bdfa98c13_wgs_gdc_realn.bam 102216615296 BAM harmonized CPTAC3 68919e37-7f72-4142-9056-d25bd6aae103 fbb48011c450a85d074427af59f6cb04 { 'aliquot_tag': 'ALQ_162f747e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02894.WGS.T C3L-02894 UCEC WGS tumor CPT0196790007 CPT0196790007.WholeGenome.RP-1303.bam 78782532082 BAM aligned CPTAC3 8a75b1dd-21f7-4d45-aea5-391a3fb187a2 fc07e88060882c3c5a5bfb827bd71b72 { 'aliquot_tag': 'ALQ_fd52a2f5', 'gdc_sample_type': 'Primary Tumor' } @@ -12361,9 +13176,9 @@ C3L-02894.WXS.T.hg38 C3L-02894 UCEC WXS tumor CPT0196790007 c017f8ce-1f65-463e-9 C3L-02897.miRNA-Seq.T C3L-02897 PDA miRNA-Seq tumor CPT0217700010 190712_UNC32-K00270_0192_BH7HL3BBXY_CGGAAT_S13_L006_R1_001.unaln.bam 173523011 BAM unaligned CPTAC3 57e90727-1ce1-4d1d-8844-1d48d3c4d33e 359d0204a18cc709b51b6bf2cfe8d1c0 { 'aliquot_tag': 'ALQ_3b2248a2', 'gdc_sample_type': 'Primary Tumor' } C3L-02897.miRNA-Seq.T.hg38 C3L-02897 PDA miRNA-Seq tumor CPT0217700010 4b763714-284e-4291-8a50-ac1a9f7de21b_mirnaseq_gdc_realn.bam 196554601 BAM harmonized CPTAC3 53a4d217-2569-47e1-87a7-6caafcccba63 9250b2625051218cb6b9b841b3908f1c { 'aliquot_tag': 'ALQ_3b2248a2', 'gdc_sample_type': 'Primary Tumor' } C3L-02897.RNA-Seq.chimeric.T.hg38 C3L-02897 PDA RNA-Seq tumor CPT0217700010 f656373b-3d4e-4b8d-8ba7-f224a802b559.rna_seq.chimeric.gdc_realn.bam 36810848 BAM chimeric harmonized CPTAC3 536406d6-edad-474d-bbb7-6cc6c30b16e4 9bcdc9320e106a29ac869c1773fc56a6 { 'aliquot_tag': 'ALQ_3b2248a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-02897.RNA-Seq.genomic.T.hg38 C3L-02897 PDA RNA-Seq tumor CPT0217700010 f656373b-3d4e-4b8d-8ba7-f224a802b559.rna_seq.genomic.gdc_realn.bam 10234141614 BAM genomic harmonized CPTAC3 254de000-c63f-4364-9327-7a76686f03e3 e7ad832353804db5bd6261ae879ddecf { 'aliquot_tag': 'ALQ_3b2248a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-02897.RNA-Seq.R1_L003.T C3L-02897 PDA RNA-Seq tumor CPT0217700010 190717_UNC31-K00269_0233_BH7HG5BBXY_TCGTAGTG-AGACTTGG_S8_L003_R1_001.fastq.gz 4341150721 FASTQ R1_L003 unaligned CPTAC3 629ce841-44b4-46c3-a0eb-43ac05005930 18752cfdf53add4d53eddda4ba0c4eba { 'aliquot_tag': 'ALQ_3b2248a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-02897.RNA-Seq.R2_L003.T C3L-02897 PDA RNA-Seq tumor CPT0217700010 190717_UNC31-K00269_0233_BH7HG5BBXY_TCGTAGTG-AGACTTGG_S8_L003_R2_001.fastq.gz 4549041539 FASTQ R2_L003 unaligned CPTAC3 99f87dd5-26dd-40e8-aa30-88673abbab58 85709ee411184d41b21ec192bd99ac36 { 'aliquot_tag': 'ALQ_3b2248a2', 'gdc_sample_type': 'Primary Tumor' } +C3L-02897.RNA-Seq.genomic.T.hg38 C3L-02897 PDA RNA-Seq tumor CPT0217700010 f656373b-3d4e-4b8d-8ba7-f224a802b559.rna_seq.genomic.gdc_realn.bam 10234141614 BAM genomic harmonized CPTAC3 02897562-5bc3-4321-967c-8be945003df6 e7ad832353804db5bd6261ae879ddecf { 'aliquot_tag': 'ALQ_3b2248a2', 'gdc_sample_type': 'Primary Tumor' } +C3L-02897.RNA-Seq.R1_L003.T C3L-02897 PDA RNA-Seq tumor CPT0217700010 190717_UNC31-K00269_0233_BH7HG5BBXY_TCGTAGTG-AGACTTGG_S8_L003_R1_001.fastq.gz 4341150721 FASTQ R1_L003 unaligned CPTAC3 629ce841-44b4-46c3-a0eb-43ac05005930 18752cfdf53add4d53eddda4ba0c4eba { 'aliquot_tag': 'ALQ_3b2248a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02897.RNA-Seq.R2_L003.T C3L-02897 PDA RNA-Seq tumor CPT0217700010 190717_UNC31-K00269_0233_BH7HG5BBXY_TCGTAGTG-AGACTTGG_S8_L003_R2_001.fastq.gz 4549041539 FASTQ R2_L003 unaligned CPTAC3 99f87dd5-26dd-40e8-aa30-88673abbab58 85709ee411184d41b21ec192bd99ac36 { 'aliquot_tag': 'ALQ_3b2248a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-02897.RNA-Seq.transcriptome.T.hg38 C3L-02897 PDA RNA-Seq tumor CPT0217700010 f656373b-3d4e-4b8d-8ba7-f224a802b559.rna_seq.transcriptome.gdc_realn.bam 12498821711 BAM transcriptome harmonized CPTAC3 2929e642-4426-4493-80a5-a8de73ed0925 fa807e08372777f472edc769c6cf73b1 { 'aliquot_tag': 'ALQ_3b2248a2', 'gdc_sample_type': 'Primary Tumor' } C3L-02897.WGS.N C3L-02897 PDA WGS blood_normal CPT0219810002 CPT0219810002.WholeGenome.RP-1303.bam 72888767770 BAM aligned CPTAC3 ac647f2e-5a8c-4770-9e33-eb8a357a5533 54d1e92e420b706bcf387e32abb17207 { 'aliquot_tag': 'ALQ_503ef8f7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02897.WGS.N.hg38 C3L-02897 PDA WGS blood_normal CPT0219810002 5884a7e5-1c56-49c7-aece-8650d523d6f7_wgs_gdc_realn.bam 106274527377 BAM harmonized CPTAC3 45104f69-10c8-4774-bb5a-0e7aa70ecec8 d1a7362cf8f3c8ffc6adab1d16a7f9fb { 'aliquot_tag': 'ALQ_503ef8f7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12381,12 +13196,12 @@ C3L-02899.miRNA-Seq.T C3L-02899 PDA miRNA-Seq tumor CPT0197420010 190712_UNC32-K C3L-02899.miRNA-Seq.T.hg38 C3L-02899 PDA miRNA-Seq tumor CPT0197420010 538b1edf-ed98-408e-a04a-325816db905d_mirnaseq_gdc_realn.bam 210166735 BAM harmonized CPTAC3 aada5e60-54eb-4ba7-989e-e1d7f58a740e b0543a2d2c16a15399236bab6d138c31 { 'aliquot_tag': 'ALQ_2d1e4e1c', 'gdc_sample_type': 'Primary Tumor' } C3L-02899.RNA-Seq.chimeric.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 cf5ad770-ab17-407f-99c9-5c9483847a15.rna_seq.chimeric.gdc_realn.bam 36292961 BAM chimeric harmonized CPTAC3 133aba17-d8c0-4809-a2ef-00a99e0c535c 904f3e0f81cb806624579b99154f3ea2 { 'aliquot_tag': 'ALQ_a25ebbbc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02899.RNA-Seq.chimeric.T.hg38 C3L-02899 PDA RNA-Seq tumor CPT0197420010 551e48a0-ad8b-47f8-8277-f574573806f5.rna_seq.chimeric.gdc_realn.bam 44836679 BAM chimeric harmonized CPTAC3 76fafad4-c728-4fc5-be0f-2ff6dbdf02d4 3d76098e2a7237b7dbf76ebb96388a51 { 'aliquot_tag': 'ALQ_2d1e4e1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02899.RNA-Seq.genomic.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 cf5ad770-ab17-407f-99c9-5c9483847a15.rna_seq.genomic.gdc_realn.bam 7721879689 BAM genomic harmonized CPTAC3 67f26f8e-bcb7-4657-aa66-18ab4aa10f10 1f2f82c442468f2534d86f3f34723000 { 'aliquot_tag': 'ALQ_a25ebbbc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02899.RNA-Seq.genomic.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 cf5ad770-ab17-407f-99c9-5c9483847a15.rna_seq.genomic.gdc_realn.bam 7721879689 BAM genomic harmonized CPTAC3 2805f649-a644-40f8-8338-4152e87ac186 1f2f82c442468f2534d86f3f34723000 { 'aliquot_tag': 'ALQ_a25ebbbc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02899.RNA-Seq.genomic.T.hg38 C3L-02899 PDA RNA-Seq tumor CPT0197420010 551e48a0-ad8b-47f8-8277-f574573806f5.rna_seq.genomic.gdc_realn.bam 11762843474 BAM genomic harmonized CPTAC3 1edb2b1e-d7e0-4482-a5a5-5c634957d266 9f645bc145a91c8695bfb498b1ce73c4 { 'aliquot_tag': 'ALQ_2d1e4e1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02899.RNA-Seq.R1_L002.A C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGATACT-ACTTACAT_S8_L002_R1_001.fastq.gz 3949078775 FASTQ R1_L002 unaligned CPTAC3 0cd72a75-dc9b-47b8-aeaa-0920e311135a 1de99857f7969ad3f61a5413f1a3cd46 { 'aliquot_tag': 'ALQ_a25ebbbc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02899.RNA-Seq.R1_L007.T C3L-02899 PDA RNA-Seq tumor CPT0197420010 190614_UNC32-K00270_0182_BH7777BBXY_CTTGGTAT-CCAAGTCC_S28_L007_R1_001.fastq.gz 4407488559 FASTQ R1_L007 unaligned CPTAC3 0360979a-14eb-4e86-9e58-f21bdd2a772b fd8f54360a2ac4480233b5758f4fc3ae { 'aliquot_tag': 'ALQ_2d1e4e1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02899.RNA-Seq.R2_L002.A C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGATACT-ACTTACAT_S8_L002_R2_001.fastq.gz 4058775194 FASTQ R2_L002 unaligned CPTAC3 7c3252a4-ed1f-4eb3-9648-6ca66565fb6a 40977a392c4c4efd9a40b8f2db268c8a { 'aliquot_tag': 'ALQ_a25ebbbc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02899.RNA-Seq.R2_L007.T C3L-02899 PDA RNA-Seq tumor CPT0197420010 190614_UNC32-K00270_0182_BH7777BBXY_CTTGGTAT-CCAAGTCC_S28_L007_R2_001.fastq.gz 4901697953 FASTQ R2_L007 unaligned CPTAC3 e71c4035-8b43-4fc3-81ed-4f367fd259ee c5dcc23405a4b41c461ded2c68f5ebd0 { 'aliquot_tag': 'ALQ_2d1e4e1c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02899.RNA-Seq.R1_L002.A C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGATACT-ACTTACAT_S8_L002_R1_001.fastq.gz 3949078775 FASTQ R1_L002 unaligned CPTAC3 0cd72a75-dc9b-47b8-aeaa-0920e311135a 1de99857f7969ad3f61a5413f1a3cd46 { 'aliquot_tag': 'ALQ_a25ebbbc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-02899.RNA-Seq.R1_L007.T C3L-02899 PDA RNA-Seq tumor CPT0197420010 190614_UNC32-K00270_0182_BH7777BBXY_CTTGGTAT-CCAAGTCC_S28_L007_R1_001.fastq.gz 4407488559 FASTQ R1_L007 unaligned CPTAC3 0360979a-14eb-4e86-9e58-f21bdd2a772b fd8f54360a2ac4480233b5758f4fc3ae { 'aliquot_tag': 'ALQ_2d1e4e1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02899.RNA-Seq.R2_L002.A C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGATACT-ACTTACAT_S8_L002_R2_001.fastq.gz 4058775194 FASTQ R2_L002 unaligned CPTAC3 7c3252a4-ed1f-4eb3-9648-6ca66565fb6a 40977a392c4c4efd9a40b8f2db268c8a { 'aliquot_tag': 'ALQ_a25ebbbc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-02899.RNA-Seq.R2_L007.T C3L-02899 PDA RNA-Seq tumor CPT0197420010 190614_UNC32-K00270_0182_BH7777BBXY_CTTGGTAT-CCAAGTCC_S28_L007_R2_001.fastq.gz 4901697953 FASTQ R2_L007 unaligned CPTAC3 e71c4035-8b43-4fc3-81ed-4f367fd259ee c5dcc23405a4b41c461ded2c68f5ebd0 { 'aliquot_tag': 'ALQ_2d1e4e1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-02899.RNA-Seq.transcriptome.A.hg38 C3L-02899 PDA RNA-Seq tissue_normal CPT0197440010 cf5ad770-ab17-407f-99c9-5c9483847a15.rna_seq.transcriptome.gdc_realn.bam 10052771077 BAM transcriptome harmonized CPTAC3 b3002632-ff46-4a25-8201-a86a215f29cd 21d0e0db64f985abf5548c4ad525728d { 'aliquot_tag': 'ALQ_a25ebbbc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02899.RNA-Seq.transcriptome.T.hg38 C3L-02899 PDA RNA-Seq tumor CPT0197420010 551e48a0-ad8b-47f8-8277-f574573806f5.rna_seq.transcriptome.gdc_realn.bam 11550240121 BAM transcriptome harmonized CPTAC3 7affe9b2-9037-43c1-8f6b-d4de5f851f04 4ba953acff68a61492948d96fb8bb6e1 { 'aliquot_tag': 'ALQ_2d1e4e1c', 'gdc_sample_type': 'Primary Tumor' } C3L-02899.Targeted.T C3L-02899 PDA Targeted Sequencing tumor CPT0197420007 CPT0197420007.CustomSelection.RP-1303.PDO-18786.bam 6166110820 BAM aligned CPTAC3 2425ef6e-f824-4c3b-bd7c-cf4d2c2fe3c5 ea1e2ee069b702d46c1a73bf8883331d { 'aliquot_tag': 'ALQ_aa61eafe', 'gdc_sample_type': 'Primary Tumor' } @@ -12406,9 +13221,9 @@ C3L-02900.MethArray.Red.T C3L-02900 GBM Methylation Array tumor CPT0218670006 20 C3L-02900.miRNA-Seq.T C3L-02900 GBM miRNA-Seq tumor CPT0218670009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L008_R1_001.unaln.bam 270496443 BAM unaligned CPTAC3 aa55b363-37b3-4110-890a-29dd4cc28072 0ef86a065d5806b5c122fcba20fa5351 { 'aliquot_tag': 'ALQ_d4d1be1b', 'gdc_sample_type': 'Primary Tumor' } C3L-02900.miRNA-Seq.T.hg38 C3L-02900 GBM miRNA-Seq tumor CPT0218670009 af9de5cd-08fe-4d2a-a18f-714b19a602df_mirnaseq_gdc_realn.bam 308545988 BAM harmonized CPTAC3 fd2814f0-cac8-4639-b82e-c61fe5aadee4 280a751faf272ab84f519553685afdbb { 'aliquot_tag': 'ALQ_d4d1be1b', 'gdc_sample_type': 'Primary Tumor' } C3L-02900.RNA-Seq.chimeric.T.hg38 C3L-02900 GBM RNA-Seq tumor CPT0218670009 a5dec952-c449-4fc5-80f0-85a2246884bf.rna_seq.chimeric.gdc_realn.bam 38940989 BAM chimeric harmonized CPTAC3 9ec8319e-d82d-45ff-94ef-1ac9b02615eb 4e150fe68b2f0e035e402a64f891540c { 'aliquot_tag': 'ALQ_d4d1be1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02900.RNA-Seq.genomic.T.hg38 C3L-02900 GBM RNA-Seq tumor CPT0218670009 a5dec952-c449-4fc5-80f0-85a2246884bf.rna_seq.genomic.gdc_realn.bam 8316235781 BAM genomic harmonized CPTAC3 bef37800-7361-437b-8f0e-3ea97442cec8 0b683b448d87042b066c482b4c6ef5b5 { 'aliquot_tag': 'ALQ_d4d1be1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02900.RNA-Seq.R1_L006.T C3L-02900 GBM RNA-Seq tumor CPT0218670009 180918_UNC31-K00269_0152_AHWNJTBBXX_GATCAG_S5_L006_R1_001.fastq.gz 3747926637 FASTQ R1_L006 unaligned CPTAC3 ce9d64d7-7245-43fc-b9c3-83b8099af70c bf16f687b2195dbb500992a635232521 { 'aliquot_tag': 'ALQ_d4d1be1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-02900.RNA-Seq.R2_L006.T C3L-02900 GBM RNA-Seq tumor CPT0218670009 180918_UNC31-K00269_0152_AHWNJTBBXX_GATCAG_S5_L006_R2_001.fastq.gz 3922660448 FASTQ R2_L006 unaligned CPTAC3 ed8d7108-a0fc-4c05-88c7-b36c2a46344f 80008753978f47fe2412e7a11b66f800 { 'aliquot_tag': 'ALQ_d4d1be1b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02900.RNA-Seq.genomic.T.hg38 C3L-02900 GBM RNA-Seq tumor CPT0218670009 a5dec952-c449-4fc5-80f0-85a2246884bf.rna_seq.genomic.gdc_realn.bam 8316235781 BAM genomic harmonized CPTAC3 84b8113b-0daf-4807-a4f1-fb03d3186105 0b683b448d87042b066c482b4c6ef5b5 { 'aliquot_tag': 'ALQ_d4d1be1b', 'gdc_sample_type': 'Primary Tumor' } +C3L-02900.RNA-Seq.R1_L006.T C3L-02900 GBM RNA-Seq tumor CPT0218670009 180918_UNC31-K00269_0152_AHWNJTBBXX_GATCAG_S5_L006_R1_001.fastq.gz 3747926637 FASTQ R1_L006 unaligned CPTAC3 ce9d64d7-7245-43fc-b9c3-83b8099af70c bf16f687b2195dbb500992a635232521 { 'aliquot_tag': 'ALQ_d4d1be1b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02900.RNA-Seq.R2_L006.T C3L-02900 GBM RNA-Seq tumor CPT0218670009 180918_UNC31-K00269_0152_AHWNJTBBXX_GATCAG_S5_L006_R2_001.fastq.gz 3922660448 FASTQ R2_L006 unaligned CPTAC3 ed8d7108-a0fc-4c05-88c7-b36c2a46344f 80008753978f47fe2412e7a11b66f800 { 'aliquot_tag': 'ALQ_d4d1be1b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02900.RNA-Seq.transcriptome.T.hg38 C3L-02900 GBM RNA-Seq tumor CPT0218670009 a5dec952-c449-4fc5-80f0-85a2246884bf.rna_seq.transcriptome.gdc_realn.bam 9708338164 BAM transcriptome harmonized CPTAC3 065ddded-5b27-4ab6-b379-8bb5247aa601 c3cccabe45dc037a0d383da8d2eaab54 { 'aliquot_tag': 'ALQ_d4d1be1b', 'gdc_sample_type': 'Primary Tumor' } C3L-02900.WGS.N C3L-02900 GBM WGS blood_normal CPT0219910002 CPT0219910002.WholeGenome.RP-1303.bam 65972536465 BAM aligned CPTAC3 57efdbaa-b7f4-4402-8a43-11053f1b6b91 3a77e3788e1ba38ca0808692df38fd2c { 'aliquot_tag': 'ALQ_9b622b52', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02900.WGS.N.hg38 C3L-02900 GBM WGS blood_normal CPT0219910002 6264f251-942e-4eb8-a787-58c3a28a6d66_wgs_gdc_realn.bam 95457873554 BAM harmonized CPTAC3 6ac20d11-64f1-4a61-9d85-5b7463206ccd 3713984b72195fac1bb2a9f7c19afaf3 { 'aliquot_tag': 'ALQ_9b622b52', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12428,12 +13243,12 @@ C3L-02951.miRNA-Seq.T C3L-02951 LSCC miRNA-Seq tumor CPT0197150006 181219_UNC31- C3L-02951.miRNA-Seq.T.hg38 C3L-02951 LSCC miRNA-Seq tumor CPT0197150006 72985909-0550-430a-a8c1-4b473afde62b_mirnaseq_gdc_realn.bam 147626148 BAM harmonized CPTAC3 99af2f35-2b00-4291-8bfd-8dc3da0ba8f1 b61e6f77778d95bb37818c2977b11d2a { 'aliquot_tag': 'ALQ_3f8b97cb', 'gdc_sample_type': 'Primary Tumor' } C3L-02951.RNA-Seq.chimeric.A.hg38 C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 f0600d4c-30b2-4713-a185-52c5f70dc970.rna_seq.chimeric.gdc_realn.bam 38744954 BAM chimeric harmonized CPTAC3 e42e0e24-9dfb-4ab3-8e7a-c0fb69a11166 624a49084e6c29dcc37cab4bd408d690 { 'aliquot_tag': 'ALQ_454bc4ab', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02951.RNA-Seq.chimeric.T.hg38 C3L-02951 LSCC RNA-Seq tumor CPT0197150006 eac1e99c-b052-4b28-85cd-e87affc62ddd.rna_seq.chimeric.gdc_realn.bam 100758197 BAM chimeric harmonized CPTAC3 9ad39258-2668-46fc-9353-bc14c111743b 81f1cffea2b0bfd041b2d9fe62fb27d3 { 'aliquot_tag': 'ALQ_3f8b97cb', 'gdc_sample_type': 'Primary Tumor' } -C3L-02951.RNA-Seq.genomic.A.hg38 C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 f0600d4c-30b2-4713-a185-52c5f70dc970.rna_seq.genomic.gdc_realn.bam 7656000339 BAM genomic harmonized CPTAC3 b09a3fdb-56e1-4bfd-947b-43aac413e340 38de885e5ace8c0063da88685241a488 { 'aliquot_tag': 'ALQ_454bc4ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02951.RNA-Seq.genomic.T.hg38 C3L-02951 LSCC RNA-Seq tumor CPT0197150006 eac1e99c-b052-4b28-85cd-e87affc62ddd.rna_seq.genomic.gdc_realn.bam 9037763584 BAM genomic harmonized CPTAC3 75e31139-e6f0-4877-a53b-539678151566 6f64b3c6370eb3b04b2faec81016e3db { 'aliquot_tag': 'ALQ_3f8b97cb', 'gdc_sample_type': 'Primary Tumor' } -C3L-02951.RNA-Seq.R1_L004.A C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R1_001.fastq.gz 3733021017 FASTQ R1_L004 unaligned CPTAC3 52ed1a7a-21a2-4723-9c10-f9ab61ebded1 82f2654a24efa22596de9ca384f3051e { 'aliquot_tag': 'ALQ_454bc4ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02951.RNA-Seq.R1_L007.T C3L-02951 LSCC RNA-Seq tumor CPT0197150006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGTACG_S31_L007_R1_001.fastq.gz 3824514385 FASTQ R1_L007 unaligned CPTAC3 516c640a-c178-4bd0-87e8-203ae1af4ff3 1ef5f2dbe9ec7d21b8e351b929e01076 { 'aliquot_tag': 'ALQ_3f8b97cb', 'gdc_sample_type': 'Primary Tumor' } -C3L-02951.RNA-Seq.R2_L004.A C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R2_001.fastq.gz 3719756463 FASTQ R2_L004 unaligned CPTAC3 fdbb3ee9-6312-4094-913d-ad95d73301b0 5c3f556988dcf1b5abac693b0343dd5e { 'aliquot_tag': 'ALQ_454bc4ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02951.RNA-Seq.R2_L007.T C3L-02951 LSCC RNA-Seq tumor CPT0197150006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGTACG_S31_L007_R2_001.fastq.gz 4130462294 FASTQ R2_L007 unaligned CPTAC3 7c9a2e6d-0af7-45f5-afff-ab09ba86dbd6 caa6b4e1f2bad421ac4a1f1ee32844cc { 'aliquot_tag': 'ALQ_3f8b97cb', 'gdc_sample_type': 'Primary Tumor' } +C3L-02951.RNA-Seq.genomic.A.hg38 C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 f0600d4c-30b2-4713-a185-52c5f70dc970.rna_seq.genomic.gdc_realn.bam 7656000339 BAM genomic harmonized CPTAC3 485b5cb0-e380-4164-9844-c92554440a7b 38de885e5ace8c0063da88685241a488 { 'aliquot_tag': 'ALQ_454bc4ab', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02951.RNA-Seq.genomic.T.hg38 C3L-02951 LSCC RNA-Seq tumor CPT0197150006 eac1e99c-b052-4b28-85cd-e87affc62ddd.rna_seq.genomic.gdc_realn.bam 9037763584 BAM genomic harmonized CPTAC3 83b04a94-1e32-45ad-82e9-4514a9285704 6f64b3c6370eb3b04b2faec81016e3db { 'aliquot_tag': 'ALQ_3f8b97cb', 'gdc_sample_type': 'Primary Tumor' } +C3L-02951.RNA-Seq.R1_L004.A C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R1_001.fastq.gz 3733021017 FASTQ R1_L004 unaligned CPTAC3 52ed1a7a-21a2-4723-9c10-f9ab61ebded1 82f2654a24efa22596de9ca384f3051e { 'aliquot_tag': 'ALQ_454bc4ab', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-02951.RNA-Seq.R1_L007.T C3L-02951 LSCC RNA-Seq tumor CPT0197150006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGTACG_S31_L007_R1_001.fastq.gz 3824514385 FASTQ R1_L007 unaligned CPTAC3 516c640a-c178-4bd0-87e8-203ae1af4ff3 1ef5f2dbe9ec7d21b8e351b929e01076 { 'aliquot_tag': 'ALQ_3f8b97cb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02951.RNA-Seq.R2_L004.A C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 180918_UNC31-K00269_0152_AHWNJTBBXX_ATCACG_S15_L004_R2_001.fastq.gz 3719756463 FASTQ R2_L004 unaligned CPTAC3 fdbb3ee9-6312-4094-913d-ad95d73301b0 5c3f556988dcf1b5abac693b0343dd5e { 'aliquot_tag': 'ALQ_454bc4ab', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-02951.RNA-Seq.R2_L007.T C3L-02951 LSCC RNA-Seq tumor CPT0197150006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGTACG_S31_L007_R2_001.fastq.gz 4130462294 FASTQ R2_L007 unaligned CPTAC3 7c9a2e6d-0af7-45f5-afff-ab09ba86dbd6 caa6b4e1f2bad421ac4a1f1ee32844cc { 'aliquot_tag': 'ALQ_3f8b97cb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-02951.RNA-Seq.transcriptome.A.hg38 C3L-02951 LSCC RNA-Seq tissue_normal CPT0197170006 f0600d4c-30b2-4713-a185-52c5f70dc970.rna_seq.transcriptome.gdc_realn.bam 10025001487 BAM transcriptome harmonized CPTAC3 30ab7550-be6e-4f18-9f99-44a8e7d764e8 8cb8438d9d44e2cafa26c94e8a336119 { 'aliquot_tag': 'ALQ_454bc4ab', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02951.RNA-Seq.transcriptome.T.hg38 C3L-02951 LSCC RNA-Seq tumor CPT0197150006 eac1e99c-b052-4b28-85cd-e87affc62ddd.rna_seq.transcriptome.gdc_realn.bam 11828760220 BAM transcriptome harmonized CPTAC3 61052aa7-de8f-4e84-b60e-e351eaeac151 6d1740b1e10241d9fd3c540cb1e704bf { 'aliquot_tag': 'ALQ_3f8b97cb', 'gdc_sample_type': 'Primary Tumor' } C3L-02951.WGS.A C3L-02951 LSCC WGS tissue_normal CPT0197170009 CPT0197170009.WholeGenome.RP-1303.bam 68691099892 BAM aligned CPTAC3 c6d7a343-9244-41a2-820c-66cfc91ab31a 845aad49b0afcb78029d8d0f17cb5614 { 'aliquot_tag': 'ALQ_d5f4d93a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -12452,13 +13267,16 @@ C3L-02953.MethArray.Green.T C3L-02953 UCEC Methylation Array tumor CPT0161590011 C3L-02953.MethArray.Red.T C3L-02953 UCEC Methylation Array tumor CPT0161590011 203561620089_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 1bb9317e-2420-4137-8118-97a9659ac1f0 7ea1976ad3cd5412f2bdaefff7802877 { 'aliquot_tag': 'ALQ_5c65bba8', 'gdc_sample_type': 'Primary Tumor' } C3L-02953.miRNA-Seq.T C3L-02953 UCEC miRNA-Seq tumor CPT0161590014 190508_UNC31-K00269_0215_BH7FYKBBXY_GATCAG_S9_L003_R1_001.unaln.bam 182131109 BAM unaligned CPTAC3 2fe6bc12-00ce-4115-bc49-c20ba3b6cc96 d6bc40885472ab95d3f5a8c86f347d71 { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor' } C3L-02953.miRNA-Seq.T.hg38 C3L-02953 UCEC miRNA-Seq tumor CPT0161590014 7533afe2-28a2-4dac-b7cf-c4ee4d92cfc5_mirnaseq_gdc_realn.bam 205883099 BAM harmonized CPTAC3 ef4a3c2c-63c0-4b3c-8d81-a7e0f06a9e8a e88283b59880dab4145f2e4f6b06e89a { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor' } -C3L-02953.RNA-Seq.chimeric.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 f661979e-58bb-4fb3-b318-8d1ee4562e1c.rna_seq.chimeric.gdc_realn.bam 36588835 BAM chimeric harmonized CPTAC3 31ebba24-d9f0-4bbf-b7a9-d105244c0f11 e9bbfccbe277a3822b91f304f26987a5 { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor' } -C3L-02953.RNA-Seq.genomic.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 f661979e-58bb-4fb3-b318-8d1ee4562e1c.rna_seq.genomic.gdc_realn.bam 8714081465 BAM genomic harmonized CPTAC3 2e4275dd-56f8-4421-8edb-d54a508439be 78907716642f3d5384562ae1ff917484 { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor' } -C3L-02953.RNA-Seq.R1_L008.T C3L-02953 UCEC RNA-Seq tumor CPT0161590014 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGGCGT-CCTCGGTA_S29_L008_R1_001.fastq.gz 4097115923 FASTQ R1_L008 unaligned CPTAC3 0cf1a940-7d2c-47ed-84b2-25088542b094 655d7a04ed020819d18bc5576c43ac32 { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor' } -C3L-02953.RNA-Seq.R1_.T C3L-02953 UCEC RNA-Seq tumor CPT0350270001 20210723_P2_E11_WB7988-plate2_S59_R1_001.fastq.gz 5030440707 FASTQ R1_ unaligned CPTAC3 2cc8674b-65fa-4add-9ead-07ee6ebd3824 8f5fbae8a76994cd9d614dbd408ac97c { 'aliquot_tag': 'ALQ_e14520e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02953.RNA-Seq.R2_L008.T C3L-02953 UCEC RNA-Seq tumor CPT0161590014 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGGCGT-CCTCGGTA_S29_L008_R2_001.fastq.gz 4793311223 FASTQ R2_L008 unaligned CPTAC3 aa7f2353-a16a-40d5-b1df-bf3c3ec433a2 a0449e04ebbc42c9f22c05fcac0fe511 { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor' } -C3L-02953.RNA-Seq.R2_.T C3L-02953 UCEC RNA-Seq tumor CPT0350270001 20210723_P2_E11_WB7988-plate2_S59_R2_001.fastq.gz 5191907036 FASTQ R2_ unaligned CPTAC3 2915e2af-868e-4824-a858-2efe59097325 3da45196f1b00e069d5f9c9a0dcda7ae { 'aliquot_tag': 'ALQ_e14520e1', 'gdc_sample_type': 'Primary Tumor' } -C3L-02953.RNA-Seq.transcriptome.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 f661979e-58bb-4fb3-b318-8d1ee4562e1c.rna_seq.transcriptome.gdc_realn.bam 9791719397 BAM transcriptome harmonized CPTAC3 aabc8653-87a7-499a-ad87-6e8e9b462ffc 0eecd77753903799d7afec92f874b2c9 { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor' } +C3L-02953.RNA-Seq.chimeric.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 e83effa5-0137-4316-9ba3-fa9da9ac2a41.rna_seq.chimeric.gdc_realn.bam 36576593 BAM chimeric harmonized CPTAC3 b2ff1b2b-16f4-459b-a010-7ba8ea1f71cf 8bc062b28d9b7e01f3dae1cc3be62b3c { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor' } +C3L-02953.RNA-Seq.chimeric.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0350270001 2ae54b8c-55b1-428b-a2ab-900b6cf79a31.rna_seq.chimeric.gdc_realn.bam 156544559 BAM chimeric harmonized CPTAC3 bd2a2d2c-7f50-4475-84de-f741588609ee d51774222b8dc9888b07943224bb936b { 'aliquot_tag': 'ALQ_e14520e1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02953.RNA-Seq.genomic.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 e83effa5-0137-4316-9ba3-fa9da9ac2a41.rna_seq.genomic.gdc_realn.bam 8715154184 BAM genomic harmonized CPTAC3 2c02422d-904e-4a09-8714-651a828d1840 79b6287b44e6d8eb7429e5bdb977ac9b { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor' } +C3L-02953.RNA-Seq.genomic.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0350270001 2ae54b8c-55b1-428b-a2ab-900b6cf79a31.rna_seq.genomic.gdc_realn.bam 8528697775 BAM genomic harmonized CPTAC3 909c4090-6fa8-4ad6-ad7b-a2937273d2b8 757bfba03084a8abd3c8fd17eef96824 { 'aliquot_tag': 'ALQ_e14520e1', 'gdc_sample_type': 'Primary Tumor' } +C3L-02953.RNA-Seq.R1_L008.T C3L-02953 UCEC RNA-Seq tumor CPT0161590014 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGGCGT-CCTCGGTA_S29_L008_R1_001.fastq.gz 4097115923 FASTQ R1_L008 unaligned CPTAC3 0cf1a940-7d2c-47ed-84b2-25088542b094 655d7a04ed020819d18bc5576c43ac32 { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-02953.RNA-Seq.R2_L008.T C3L-02953 UCEC RNA-Seq tumor CPT0161590014 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGGCGT-CCTCGGTA_S29_L008_R2_001.fastq.gz 4793311223 FASTQ R2_L008 unaligned CPTAC3 aa7f2353-a16a-40d5-b1df-bf3c3ec433a2 a0449e04ebbc42c9f22c05fcac0fe511 { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-02953.RNA-Seq.T C3L-02953 UCEC RNA-Seq tumor CPT0350270001 20210723_P2_E11_WB7988-plate2_S59_R1_001.fastq.gz 5030440707 FASTQ unaligned CPTAC3 2cc8674b-65fa-4add-9ead-07ee6ebd3824 8f5fbae8a76994cd9d614dbd408ac97c +C3L-02953.RNA-Seq.T C3L-02953 UCEC RNA-Seq tumor CPT0350270001 20210723_P2_E11_WB7988-plate2_S59_R2_001.fastq.gz 5191907036 FASTQ unaligned CPTAC3 2915e2af-868e-4824-a858-2efe59097325 3da45196f1b00e069d5f9c9a0dcda7ae +C3L-02953.RNA-Seq.transcriptome.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0161590014 e83effa5-0137-4316-9ba3-fa9da9ac2a41.rna_seq.transcriptome.gdc_realn.bam 11242818702 BAM transcriptome harmonized CPTAC3 edddd5cf-90af-4121-9629-74cd8f5a35b3 74db8975e9b52e693ec877754d5cffdc { 'aliquot_tag': 'ALQ_2c0f4f27', 'gdc_sample_type': 'Primary Tumor' } +C3L-02953.RNA-Seq.transcriptome.T.hg38 C3L-02953 UCEC RNA-Seq tumor CPT0350270001 2ae54b8c-55b1-428b-a2ab-900b6cf79a31.rna_seq.transcriptome.gdc_realn.bam 4417592853 BAM transcriptome harmonized CPTAC3 b1b0d675-cc73-41ed-97a6-268bec3bd4a8 a5d004c892b0357f41897459249e02ee { 'aliquot_tag': 'ALQ_e14520e1', 'gdc_sample_type': 'Primary Tumor' } C3L-02953.WGS.N C3L-02953 UCEC WGS blood_normal CPT0162520002 CPT0162520002.WholeGenome.RP-1303.bam 78834093706 BAM aligned CPTAC3 a912179c-8e94-4098-b690-b70059d66043 820e0dc8f463627c37ab0213f858aa04 { 'aliquot_tag': 'ALQ_9a4ff0df', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02953.WGS.N.hg38 C3L-02953 UCEC WGS blood_normal CPT0162520002 9bc1bf3d-4c79-4144-bef0-90730270b764_wgs_gdc_realn.bam 115309510897 BAM harmonized CPTAC3 06bdc9bb-c645-4a26-a2fe-2a38b175b531 cb5a45898fb09312c55ef14232403efa { 'aliquot_tag': 'ALQ_9a4ff0df', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02953.WGS.T C3L-02953 UCEC WGS tumor CPT0161590011 CPT0161590011.WholeGenome.RP-1303.bam 83906829976 BAM aligned CPTAC3 f52db603-3db8-4877-9420-472156b5f5f8 57900db0c4f5e1ad37e8fd599365fc0d { 'aliquot_tag': 'ALQ_5c65bba8', 'gdc_sample_type': 'Primary Tumor' } @@ -12475,16 +13293,16 @@ C3L-02954.miRNA-Seq.A C3L-02954 LUAD miRNA-Seq tissue_normal CPT0161900009 19071 C3L-02954.miRNA-Seq.A.hg38 C3L-02954 LUAD miRNA-Seq tissue_normal CPT0161900009 0b6c9fa0-bbbd-4a54-86cd-f4f00314f962_mirnaseq_gdc_realn.bam 215754971 BAM harmonized CPTAC3 4e833128-a70a-4165-8ac3-0b2a20181400 ec31fed0b6b0726123addfd8a724fc1d { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02954.miRNA-Seq.T C3L-02954 LUAD miRNA-Seq tumor CPT0161890009 190722_UNC31-K00269_0234_AH7VGTBBXY_CCGTCC_S12_L005_R1_001.unaln.bam 164738137 BAM unaligned CPTAC3 2930e683-3884-44fe-a72f-356871cbdf62 027e4b45b4e8244773b710e9fb9b1abe { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor' } C3L-02954.miRNA-Seq.T.hg38 C3L-02954 LUAD miRNA-Seq tumor CPT0161890009 5fbbc952-b7cb-4ac5-b61c-836a4545cd76_mirnaseq_gdc_realn.bam 182839501 BAM harmonized CPTAC3 d3a447ff-a44d-4b49-b23f-cfe5e3816acd 21af8a7e43473a44ddd924b6879d2481 { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor' } -C3L-02954.RNA-Seq.chimeric.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 b4f42faf-5e78-48ac-82aa-4d8febb01d52.rna_seq.chimeric.gdc_realn.bam 66018743 BAM chimeric harmonized CPTAC3 a58c50e2-fb82-43ac-85ad-354d426fffa7 751e18668c840222691468709cb1652e { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02954.RNA-Seq.chimeric.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 55e36bde-fc97-47ae-aa04-66ac2252ecee.rna_seq.chimeric.gdc_realn.bam 39625895 BAM chimeric harmonized CPTAC3 b82172b2-8d2a-4a83-8206-79e77ef66043 f6a36e4643a502de42383704291ebab2 { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor' } -C3L-02954.RNA-Seq.genomic.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 b4f42faf-5e78-48ac-82aa-4d8febb01d52.rna_seq.genomic.gdc_realn.bam 10305497091 BAM genomic harmonized CPTAC3 23bfeb83-439b-4c13-86da-e9f71ed9a696 2e42e87b62c2379cbb8bc1318f9d611a { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02954.RNA-Seq.genomic.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 55e36bde-fc97-47ae-aa04-66ac2252ecee.rna_seq.genomic.gdc_realn.bam 13437176452 BAM genomic harmonized CPTAC3 3d922014-ae45-4fa2-bf44-9b2a2b25055f 3922f5c555fec880ad6123b5cf8f7b3b { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor' } -C3L-02954.RNA-Seq.R1_L003.T C3L-02954 LUAD RNA-Seq tumor CPT0161890009 190607_UNC32-K00270_0179_BH75W2BBXY_AATCCGGA-CTACAGTT_S12_L003_R1_001.fastq.gz 4458540622 FASTQ R1_L003 unaligned CPTAC3 5fe3fe64-6744-4729-b179-5337065a5260 2fce56ef1306e61e4f9d5067d936bf21 { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor' } -C3L-02954.RNA-Seq.R1_L006.A C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATCCACTG-AGGTGCGT_S18_L006_R1_001.fastq.gz 3805429222 FASTQ R1_L006 unaligned CPTAC3 9d871e37-e6a9-4848-9e82-56aae6c8b4a3 39bd9a90bb28a8c167c4124e620bb1e3 { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02954.RNA-Seq.R2_L003.T C3L-02954 LUAD RNA-Seq tumor CPT0161890009 190607_UNC32-K00270_0179_BH75W2BBXY_AATCCGGA-CTACAGTT_S12_L003_R2_001.fastq.gz 5116470503 FASTQ R2_L003 unaligned CPTAC3 f37eca52-6cde-4686-8899-4dc0dc52b4c1 dbd01c6827d00cd93f8f0885a650d168 { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor' } -C3L-02954.RNA-Seq.R2_L006.A C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATCCACTG-AGGTGCGT_S18_L006_R2_001.fastq.gz 4082573186 FASTQ R2_L006 unaligned CPTAC3 d1038cb1-8e4d-49c6-b41b-bbf57d007d37 abdc7979b5959f896aa896d5c2195fce { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02954.RNA-Seq.transcriptome.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 b4f42faf-5e78-48ac-82aa-4d8febb01d52.rna_seq.transcriptome.gdc_realn.bam 6992884407 BAM transcriptome harmonized CPTAC3 8f4238dc-36c2-4e46-bc67-f191a4b0d56a 68314bc570e6accdf27a4b5ebc79faa6 { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02954.RNA-Seq.transcriptome.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 55e36bde-fc97-47ae-aa04-66ac2252ecee.rna_seq.transcriptome.gdc_realn.bam 9782056440 BAM transcriptome harmonized CPTAC3 a6fa175a-af6c-46ef-8509-c901becc292f 4dfe49c92ef2ed12717fbfd467886cd1 { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor' } +C3L-02954.RNA-Seq.chimeric.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 040f7277-575d-490a-a4f0-e9fc82ca4a76.rna_seq.chimeric.gdc_realn.bam 66005115 BAM chimeric harmonized CPTAC3 c166a063-8252-47d3-a75a-035f407e2b5e 4fc956e30d1095da135a50ac5dac6000 { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02954.RNA-Seq.chimeric.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 8e77f852-a1c4-48d8-a6ee-5781fe4f761f.rna_seq.chimeric.gdc_realn.bam 39608861 BAM chimeric harmonized CPTAC3 92ea99b0-ed36-4dad-8875-d89e0f79459d 525859f5dd11a1dd6a9b240d8ddc82bc { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor' } +C3L-02954.RNA-Seq.genomic.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 040f7277-575d-490a-a4f0-e9fc82ca4a76.rna_seq.genomic.gdc_realn.bam 10306113151 BAM genomic harmonized CPTAC3 48bb7228-af9f-47cc-921c-907dac5a18f1 fd34c48e97c3f762232a01e992425cd4 { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02954.RNA-Seq.genomic.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 8e77f852-a1c4-48d8-a6ee-5781fe4f761f.rna_seq.genomic.gdc_realn.bam 13438265989 BAM genomic harmonized CPTAC3 93504739-e876-4ea4-8a71-e541947ebd37 30f766ba45943e3e6a2c1af95b8ed3f9 { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor' } +C3L-02954.RNA-Seq.R1_L003.T C3L-02954 LUAD RNA-Seq tumor CPT0161890009 190607_UNC32-K00270_0179_BH75W2BBXY_AATCCGGA-CTACAGTT_S12_L003_R1_001.fastq.gz 4458540622 FASTQ R1_L003 unaligned CPTAC3 5fe3fe64-6744-4729-b179-5337065a5260 2fce56ef1306e61e4f9d5067d936bf21 { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02954.RNA-Seq.R1_L006.A C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATCCACTG-AGGTGCGT_S18_L006_R1_001.fastq.gz 3805429222 FASTQ R1_L006 unaligned CPTAC3 9d871e37-e6a9-4848-9e82-56aae6c8b4a3 39bd9a90bb28a8c167c4124e620bb1e3 { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-02954.RNA-Seq.R2_L003.T C3L-02954 LUAD RNA-Seq tumor CPT0161890009 190607_UNC32-K00270_0179_BH75W2BBXY_AATCCGGA-CTACAGTT_S12_L003_R2_001.fastq.gz 5116470503 FASTQ R2_L003 unaligned CPTAC3 f37eca52-6cde-4686-8899-4dc0dc52b4c1 dbd01c6827d00cd93f8f0885a650d168 { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02954.RNA-Seq.R2_L006.A C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATCCACTG-AGGTGCGT_S18_L006_R2_001.fastq.gz 4082573186 FASTQ R2_L006 unaligned CPTAC3 d1038cb1-8e4d-49c6-b41b-bbf57d007d37 abdc7979b5959f896aa896d5c2195fce { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-02954.RNA-Seq.transcriptome.A.hg38 C3L-02954 LUAD RNA-Seq tissue_normal CPT0161900009 040f7277-575d-490a-a4f0-e9fc82ca4a76.rna_seq.transcriptome.gdc_realn.bam 7942097334 BAM transcriptome harmonized CPTAC3 5c0b486c-61d3-4b14-949b-64df41ace625 cc4f932a7b77dbca67bf5c40c24b0b7a { 'aliquot_tag': 'ALQ_3177a0d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02954.RNA-Seq.transcriptome.T.hg38 C3L-02954 LUAD RNA-Seq tumor CPT0161890009 8e77f852-a1c4-48d8-a6ee-5781fe4f761f.rna_seq.transcriptome.gdc_realn.bam 10914388924 BAM transcriptome harmonized CPTAC3 47735cb0-f98e-43ed-bf71-a3a92830f3fc 013e8089f443644c89fb2fe48b24db0f { 'aliquot_tag': 'ALQ_f73b1105', 'gdc_sample_type': 'Primary Tumor' } C3L-02954.WGS.N C3L-02954 LUAD WGS blood_normal CPT0162580002 CPT0162580002.WholeGenome.RP-1303.bam 81211486224 BAM aligned CPTAC3 47d2d3b9-db3d-4b92-9a5d-c60491c15f4c f11b4d9e6f4afa6ce3c60923f0725ffd { 'aliquot_tag': 'ALQ_d0ffe87e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02954.WGS.N.hg38 C3L-02954 LUAD WGS blood_normal CPT0162580002 5241b5b0-f264-4a87-804c-b0bff2e35445_wgs_gdc_realn.bam 116359383690 BAM harmonized CPTAC3 a2662d55-b8c2-4a39-85e7-c37d2281cd29 ed937dba083a3bcde7f510595f661d8d { 'aliquot_tag': 'ALQ_d0ffe87e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02954.WGS.T C3L-02954 LUAD WGS tumor CPT0161890006 CPT0161890006.WholeGenome.RP-1303.bam 55456771882 BAM aligned CPTAC3 45212ad3-047b-4953-a9eb-3e0ad3d5f5c2 7576ef15180a59d341558ea601dd4fff { 'aliquot_tag': 'ALQ_67840c94', 'gdc_sample_type': 'Primary Tumor' } @@ -12500,9 +13318,9 @@ C3L-02955.MethArray.Red.T C3L-02955 GBM Methylation Array tumor CPT0196850009 20 C3L-02955.miRNA-Seq.T C3L-02955 GBM miRNA-Seq tumor CPT0196850006 181219_UNC31-K00269_0173_BHYGJJBBXX_GTGAAA_S19_L003_R1_001.unaln.bam 296456423 BAM unaligned CPTAC3 3fec007c-6da8-458a-a16c-edb26d20c720 cc11b36538633ca093bec10e98a578ed { 'aliquot_tag': 'ALQ_bef3cdb7', 'gdc_sample_type': 'Primary Tumor' } C3L-02955.miRNA-Seq.T.hg38 C3L-02955 GBM miRNA-Seq tumor CPT0196850006 906a2caf-32cc-44a6-a2e2-2a8b24feb405_mirnaseq_gdc_realn.bam 326699299 BAM harmonized CPTAC3 8d91c5c6-1875-43bb-a468-6d9ae8e055a8 b9e9f375adcd61196ba5e913066d7ae0 { 'aliquot_tag': 'ALQ_bef3cdb7', 'gdc_sample_type': 'Primary Tumor' } C3L-02955.RNA-Seq.chimeric.T.hg38 C3L-02955 GBM RNA-Seq tumor CPT0196850006 7233071b-a349-48c9-8609-57537ec6fc6d.rna_seq.chimeric.gdc_realn.bam 209106858 BAM chimeric harmonized CPTAC3 cc534cae-0de2-481e-a5c4-06136d7c98c4 6eb04864072d1df68a90a4ea341ac797 { 'aliquot_tag': 'ALQ_bef3cdb7', 'gdc_sample_type': 'Primary Tumor' } -C3L-02955.RNA-Seq.genomic.T.hg38 C3L-02955 GBM RNA-Seq tumor CPT0196850006 7233071b-a349-48c9-8609-57537ec6fc6d.rna_seq.genomic.gdc_realn.bam 9183283400 BAM genomic harmonized CPTAC3 f8c64eab-3747-4447-b7be-55ae136435be c12361d9cb12095be16eaaa807714f20 { 'aliquot_tag': 'ALQ_bef3cdb7', 'gdc_sample_type': 'Primary Tumor' } -C3L-02955.RNA-Seq.R1_L006.T C3L-02955 GBM RNA-Seq tumor CPT0196850006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R1_001.fastq.gz 4173598325 FASTQ R1_L006 unaligned CPTAC3 e7789396-db2e-4d22-834a-b310021a57ee 8fa2f50e55412694c64f02bf4bcf7871 { 'aliquot_tag': 'ALQ_bef3cdb7', 'gdc_sample_type': 'Primary Tumor' } -C3L-02955.RNA-Seq.R2_L006.T C3L-02955 GBM RNA-Seq tumor CPT0196850006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R2_001.fastq.gz 4407032916 FASTQ R2_L006 unaligned CPTAC3 fe6a58b1-0a07-44f2-b4c1-606ea06a5158 7f8211a460934bd29b202d4662f38428 { 'aliquot_tag': 'ALQ_bef3cdb7', 'gdc_sample_type': 'Primary Tumor' } +C3L-02955.RNA-Seq.genomic.T.hg38 C3L-02955 GBM RNA-Seq tumor CPT0196850006 7233071b-a349-48c9-8609-57537ec6fc6d.rna_seq.genomic.gdc_realn.bam 9183283400 BAM genomic harmonized CPTAC3 9203c07c-df98-47dd-b976-7baa5d94ce9a c12361d9cb12095be16eaaa807714f20 { 'aliquot_tag': 'ALQ_bef3cdb7', 'gdc_sample_type': 'Primary Tumor' } +C3L-02955.RNA-Seq.R1_L006.T C3L-02955 GBM RNA-Seq tumor CPT0196850006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R1_001.fastq.gz 4173598325 FASTQ R1_L006 unaligned CPTAC3 e7789396-db2e-4d22-834a-b310021a57ee 8fa2f50e55412694c64f02bf4bcf7871 { 'aliquot_tag': 'ALQ_bef3cdb7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02955.RNA-Seq.R2_L006.T C3L-02955 GBM RNA-Seq tumor CPT0196850006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGGCC_S27_L006_R2_001.fastq.gz 4407032916 FASTQ R2_L006 unaligned CPTAC3 fe6a58b1-0a07-44f2-b4c1-606ea06a5158 7f8211a460934bd29b202d4662f38428 { 'aliquot_tag': 'ALQ_bef3cdb7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02955.RNA-Seq.transcriptome.T.hg38 C3L-02955 GBM RNA-Seq tumor CPT0196850006 7233071b-a349-48c9-8609-57537ec6fc6d.rna_seq.transcriptome.gdc_realn.bam 12671365646 BAM transcriptome harmonized CPTAC3 9190c816-998b-4631-a114-b5d5b914425f aa5489abb0dcd507bbf87b7cb55207c0 { 'aliquot_tag': 'ALQ_bef3cdb7', 'gdc_sample_type': 'Primary Tumor' } C3L-02955.WGS.N C3L-02955 GBM WGS blood_normal CPT0197750002 CPT0197750002.WholeGenome.RP-1303.bam 76394448497 BAM aligned CPTAC3 16388570-a5b3-4e44-a7e8-02c20921bc71 0574faebfa78bc0039161db9c4682122 { 'aliquot_tag': 'ALQ_eebfb0cf', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02955.WGS.N.hg38 C3L-02955 GBM WGS blood_normal CPT0197750002 abef83c1-3c22-4357-9f48-a52ead2d1c6a_wgs_gdc_realn.bam 109886067285 BAM harmonized CPTAC3 f4926ea1-e97c-4cdd-a27f-720fdb5e33f2 0707ff2ceaab67b80f59cddc4cbf9f7f { 'aliquot_tag': 'ALQ_eebfb0cf', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12512,23 +13330,29 @@ C3L-02955.WXS.N C3L-02955 GBM WXS blood_normal CPT0197750002 CPT0197750002.Whole C3L-02955.WXS.N.hg38 C3L-02955 GBM WXS blood_normal CPT0197750002 abef83c1-3c22-4357-9f48-a52ead2d1c6a_wxs_gdc_realn.bam 61179455806 BAM harmonized CPTAC3 535274f1-2bca-41a0-923b-ec0e1b8c5440 0e17c86ee2da66d5ff616948e525f15e { 'aliquot_tag': 'ALQ_eebfb0cf', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02955.WXS.T C3L-02955 GBM WXS tumor CPT0196850009 CPT0196850009.WholeExome.RP-1303.bam 23009684162 BAM aligned CPTAC3 478ed93d-e81d-4ee1-af82-d3fa85ce933a 2f2ce4427f8b135b8de6d6efdbdd02a1 { 'aliquot_tag': 'ALQ_2e4cd026', 'gdc_sample_type': 'Primary Tumor' } C3L-02955.WXS.T.hg38 C3L-02955 GBM WXS tumor CPT0196850009 7258c996-c299-4b53-93bf-85df20425431_wxs_gdc_realn.bam 31696351927 BAM harmonized CPTAC3 278a2b87-c006-4b75-bca9-5cf3954c8412 023501b519ed3cfa26924882cb7b9141 { 'aliquot_tag': 'ALQ_2e4cd026', 'gdc_sample_type': 'Primary Tumor' } -C3L-02956.ANN_cb0676eb.RNA-Seq.chimeric.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 a6ad652a-4a7a-4066-8e60-d964b7ee99a6.rna_seq.chimeric.gdc_realn.bam 150788160 BAM chimeric harmonized CPTAC3 d3d71616-e413-4764-a8ed-e2153f495278 39b0e157c18e17be87a2625faeea46f7 { 'aliquot_tag': 'ANN_cb0676eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-02956.ANN_cb0676eb.RNA-Seq.genomic.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 a6ad652a-4a7a-4066-8e60-d964b7ee99a6.rna_seq.genomic.gdc_realn.bam 8089306615 BAM genomic harmonized CPTAC3 73db020f-46ab-48d3-b2d4-9b21655425e8 cfdfd06e1c3198fc930ca5bf508525ef { 'aliquot_tag': 'ANN_cb0676eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-02956.ANN_cb0676eb.RNA-Seq.R1_L008.T C3L-02956 PDA RNA-Seq tumor CPT0161630024 200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R1_001.fastq.gz 3329611166 FASTQ R1_L008 unaligned CPTAC3 0a392860-e58e-418e-b55f-a3bf63e70609 5426bfc2763d7522dd934490dfd82823 { 'aliquot_tag': 'ANN_cb0676eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-02956.ANN_cb0676eb.RNA-Seq.R2_L008.T C3L-02956 PDA RNA-Seq tumor CPT0161630024 200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R2_001.fastq.gz 3833389566 FASTQ R2_L008 unaligned CPTAC3 93b3cf8a-9ac7-4c5c-9283-76376d0a9259 2d4b46e2127e177681c5029e17dd3f3a { 'aliquot_tag': 'ANN_cb0676eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-02956.ANN_cb0676eb.RNA-Seq.transcriptome.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 a6ad652a-4a7a-4066-8e60-d964b7ee99a6.rna_seq.transcriptome.gdc_realn.bam 8776010334 BAM transcriptome harmonized CPTAC3 694923b1-94f4-4a87-9dcd-f322bf95f249 7c0a82a9122c3ed6d85f404e13371e08 { 'aliquot_tag': 'ANN_cb0676eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-02956.ANN_cb0676eb.RNA-Seq.chimeric.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 4faac6cc-9aaf-42ee-9a5f-9efec23c5a3b.rna_seq.chimeric.gdc_realn.bam 150804172 BAM chimeric harmonized CPTAC3 5c06b1de-050e-4945-89c3-b700307e164d 5127d103b748b92cc7dd4e8574f9a8af { 'aliquot_tag': 'ANN_cb0676eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-02956.ANN_cb0676eb.RNA-Seq.genomic.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 4faac6cc-9aaf-42ee-9a5f-9efec23c5a3b.rna_seq.genomic.gdc_realn.bam 8101255691 BAM genomic harmonized CPTAC3 af50384e-151d-485c-b421-077b3a5039c9 a51988e565012f5dfa6c3b6fa095f7c5 { 'aliquot_tag': 'ANN_cb0676eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-02956.ANN_cb0676eb.RNA-Seq.R1_L008.T C3L-02956 PDA RNA-Seq tumor CPT0161630024 200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R1_001.fastq.gz 3329611166 FASTQ R1_L008 unaligned CPTAC3 0a392860-e58e-418e-b55f-a3bf63e70609 5426bfc2763d7522dd934490dfd82823 { 'aliquot_tag': 'ANN_cb0676eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L008' } +C3L-02956.ANN_cb0676eb.RNA-Seq.R2_L008.T C3L-02956 PDA RNA-Seq tumor CPT0161630024 200807_UNC32-K00270_0255_AHHY2WBBXY_TTCCTGTT-AGTATCTT_S15_L008_R2_001.fastq.gz 3833389566 FASTQ R2_L008 unaligned CPTAC3 93b3cf8a-9ac7-4c5c-9283-76376d0a9259 2d4b46e2127e177681c5029e17dd3f3a { 'aliquot_tag': 'ANN_cb0676eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L008' } +C3L-02956.ANN_cb0676eb.RNA-Seq.transcriptome.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630024 4faac6cc-9aaf-42ee-9a5f-9efec23c5a3b.rna_seq.transcriptome.gdc_realn.bam 9864168981 BAM transcriptome harmonized CPTAC3 64d29bd4-2931-4397-b2b7-e1d8c0dd3625 4024af8d559209fd194176dfe74a2eee { 'aliquot_tag': 'ANN_cb0676eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-02956.DUP_134b84f1.RNA-Seq.chimeric.A.hg38 C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 ebd398cd-bd04-47bf-9386-d8ca50895cba.rna_seq.chimeric.gdc_realn.bam 200387488 BAM chimeric harmonized CPTAC3 44e1ce0f-b8ad-4e7f-8962-4ec6fead9523 a75ceaa8fb0e8baa1f3f4d79efaa1154 { 'aliquot_tag': 'DUP_134b84f1', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-02956.DUP_134b84f1.RNA-Seq.genomic.A.hg38 C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 ebd398cd-bd04-47bf-9386-d8ca50895cba.rna_seq.genomic.gdc_realn.bam 6887975463 BAM genomic harmonized CPTAC3 66333741-1c95-46ff-931d-afa5befc4f8b 03ea5a1191b0203d714627382ef7adc4 { 'aliquot_tag': 'DUP_134b84f1', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-02956.DUP_134b84f1.RNA-Seq.R1_L007.A C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 220114_UNC32-K00270_0310_AHMWT5BBXY_TAATACAG-ATATTCAC_S24_L007_R1_001.fastq.gz 3365077576 FASTQ R1_L007 unaligned CPTAC3 3fa608a8-5123-4c13-83a6-ac19c44a8c6f 769d81a951485be8eb746d9864619ae3 { 'aliquot_tag': 'DUP_134b84f1', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L007' } +C3L-02956.DUP_134b84f1.RNA-Seq.R2_L007.A C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 220114_UNC32-K00270_0310_AHMWT5BBXY_TAATACAG-ATATTCAC_S24_L007_R2_001.fastq.gz 3635602400 FASTQ R2_L007 unaligned CPTAC3 c86cb301-a574-4554-9d33-69d7c8881784 ef3ec6cf399edc399d9f6ed586ecc4e4 { 'aliquot_tag': 'DUP_134b84f1', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L007' } +C3L-02956.DUP_134b84f1.RNA-Seq.transcriptome.A.hg38 C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 ebd398cd-bd04-47bf-9386-d8ca50895cba.rna_seq.transcriptome.gdc_realn.bam 9828872244 BAM transcriptome harmonized CPTAC3 e9fc2a6c-49fc-4663-8b30-348d615a385f c2b972945f03a2f4888ecae61c55e470 { 'aliquot_tag': 'DUP_134b84f1', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3L-02956.DUP_3b7ee29f.WXS.T C3L-02956 PDA WXS tumor CPT0161630032 CPT0161630032.WholeExome.RP-1303.bam 42042783523 BAM aligned CPTAC3 0895bfe7-17d5-43ca-b97d-0eb72d1b3ae8 1b0f5bfac8efbb5292f136a00a9516ac { 'aliquot_tag': 'DUP_3b7ee29f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02956.DUP_3b7ee29f.WXS.T.hg38 C3L-02956 PDA WXS tumor CPT0161630032 1eb0b36a-3410-4404-8b94-318edd048b36_wxs_gdc_realn.bam 58254334863 BAM harmonized CPTAC3 7cf60c79-091f-4c2e-8251-55c4b1879eac 48ba17237899d3e103cc25fed59d0c20 { 'aliquot_tag': 'DUP_3b7ee29f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3L-02956.DUP_4b141610.RNA-Seq.chimeric.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630037 b284db88-ab94-489c-b10e-394df6d472d8.rna_seq.chimeric.gdc_realn.bam 73142843 BAM chimeric harmonized CPTAC3 4ead405a-e683-4286-b22d-1699c2638e12 5460d7d51354a19070ae056513f82bb8 { 'aliquot_tag': 'DUP_4b141610', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-02956.DUP_4b141610.RNA-Seq.genomic.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630037 b284db88-ab94-489c-b10e-394df6d472d8.rna_seq.genomic.gdc_realn.bam 8526987797 BAM genomic harmonized CPTAC3 7150c058-4804-4c2d-8e7e-b5b7dedccd1f 301f6d6ecf09c65680afb88181147d37 { 'aliquot_tag': 'DUP_4b141610', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-02956.DUP_4b141610.RNA-Seq.R1_L006.T C3L-02956 PDA RNA-Seq tumor CPT0161630037 220114_UNC32-K00270_0310_AHMWT5BBXY_AATCCGGA-CTACAGTT_S17_L006_R1_001.fastq.gz 3942741206 FASTQ R1_L006 unaligned CPTAC3 362ffe9e-e45c-46c4-a6a9-f2e069be19aa b0cfbaf4dbd9e571bbeecf954f80f8f8 { 'aliquot_tag': 'DUP_4b141610', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L006' } +C3L-02956.DUP_4b141610.RNA-Seq.R2_L006.T C3L-02956 PDA RNA-Seq tumor CPT0161630037 220114_UNC32-K00270_0310_AHMWT5BBXY_AATCCGGA-CTACAGTT_S17_L006_R2_001.fastq.gz 4239935508 FASTQ R2_L006 unaligned CPTAC3 38b6b377-8ca1-40a5-a38f-ecd1cbfa3b7b f5f85d146463b5ae7e0fc70b32b2d379 { 'aliquot_tag': 'DUP_4b141610', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L006' } +C3L-02956.DUP_4b141610.RNA-Seq.transcriptome.T.hg38 C3L-02956 PDA RNA-Seq tumor CPT0161630037 b284db88-ab94-489c-b10e-394df6d472d8.rna_seq.transcriptome.gdc_realn.bam 11180541083 BAM transcriptome harmonized CPTAC3 f7828f74-a428-4206-8b04-8fc2ff5b92a3 2443162d009147a7dcdeb58fa01695b1 { 'aliquot_tag': 'DUP_4b141610', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3L-02956.DUP_a277b325.WXS.T C3L-02956 PDA WXS tumor CPT0161630031 CPT0161630031.WholeExome.RP-1303.bam 22578971236 BAM aligned CPTAC3 b61079a1-a06a-4ff7-8114-38397c5b45a3 128bff2e86a679b52e977ecf89666724 { 'aliquot_tag': 'DUP_a277b325', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02956.DUP_a277b325.WXS.T.hg38 C3L-02956 PDA WXS tumor CPT0161630031 f51e4a35-fb0f-4187-8241-7474a2c40fff_wxs_gdc_realn.bam 32325792008 BAM harmonized CPTAC3 65f545f3-877a-45a1-b6d3-a8b078bbe840 faa70056c787dd7b61d41c931b3d9639 { 'aliquot_tag': 'DUP_a277b325', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02956.DUP_a72fd96f.WXS.N C3L-02956 PDA WXS blood_normal CPT0162530002 CPT0162530002.WholeExome.RP-1303.bam 21966428151 BAM aligned CPTAC3 d49afefc-4eb7-4bb9-91c8-6d8290df0118 6007431568a954f6b5e1e141ae953b0e { 'aliquot_tag': 'DUP_a72fd96f', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02956.DUP_a72fd96f.WXS.N.hg38 C3L-02956 PDA WXS blood_normal CPT0162530002 fad86bd3-188e-4577-b299-82ca3a159953_wxs_gdc_realn.bam 30810046647 BAM harmonized CPTAC3 39004d60-c9c3-493e-87dc-2e47cfc424a2 22c08bf48aad32c515b9994ca8e3e15e { 'aliquot_tag': 'DUP_a72fd96f', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02956.DUP_d57083b3.WXS.T C3L-02956 PDA WXS tumor CPT0161630030 CPT0161630030.WholeExome.RP-1303.bam 31707107605 BAM aligned CPTAC3 8ac73d0d-9a31-4755-a923-e99b44052790 591114edfe34a4aa816b1e0f4130bfe7 { 'aliquot_tag': 'DUP_d57083b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-02956.DUP_d57083b3.WXS.T.hg38 C3L-02956 PDA WXS tumor CPT0161630030 bc3ba23b-93a7-4643-aa3c-bce399772e8a_wxs_gdc_realn.bam 43624526879 BAM harmonized CPTAC3 97d8916e-0670-4d6a-b36b-c53b6879b81c f8a20ed359a0cdc7f894f7d028661721 { 'aliquot_tag': 'DUP_d57083b3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3L-02956.RNA-Seq.R1_L006.T C3L-02956 PDA RNA-Seq tumor CPT0161630037 220114_UNC32-K00270_0310_AHMWT5BBXY_AATCCGGA-CTACAGTT_S17_L006_R1_001.fastq.gz 3942741206 FASTQ R1_L006 unaligned CPTAC3 362ffe9e-e45c-46c4-a6a9-f2e069be19aa b0cfbaf4dbd9e571bbeecf954f80f8f8 { 'aliquot_tag': 'ALQ_4b141610', 'gdc_sample_type': 'Primary Tumor' } -C3L-02956.RNA-Seq.R1_L007.A C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 220114_UNC32-K00270_0310_AHMWT5BBXY_TAATACAG-ATATTCAC_S24_L007_R1_001.fastq.gz 3365077576 FASTQ R1_L007 unaligned CPTAC3 3fa608a8-5123-4c13-83a6-ac19c44a8c6f 769d81a951485be8eb746d9864619ae3 { 'aliquot_tag': 'ALQ_134b84f1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02956.RNA-Seq.R2_L006.T C3L-02956 PDA RNA-Seq tumor CPT0161630037 220114_UNC32-K00270_0310_AHMWT5BBXY_AATCCGGA-CTACAGTT_S17_L006_R2_001.fastq.gz 4239935508 FASTQ R2_L006 unaligned CPTAC3 38b6b377-8ca1-40a5-a38f-ecd1cbfa3b7b f5f85d146463b5ae7e0fc70b32b2d379 { 'aliquot_tag': 'ALQ_4b141610', 'gdc_sample_type': 'Primary Tumor' } -C3L-02956.RNA-Seq.R2_L007.A C3L-02956 PDA RNA-Seq tissue_normal CPT0161660038 220114_UNC32-K00270_0310_AHMWT5BBXY_TAATACAG-ATATTCAC_S24_L007_R2_001.fastq.gz 3635602400 FASTQ R2_L007 unaligned CPTAC3 c86cb301-a574-4554-9d33-69d7c8881784 ef3ec6cf399edc399d9f6ed586ecc4e4 { 'aliquot_tag': 'ALQ_134b84f1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02957.MethArray.Green.A C3L-02957 LUAD Methylation Array tissue_normal CPT0196900006 203219640133_R05C01_Grn.idat 13676226 IDAT Green NA CPTAC3 76f06ee5-750f-4105-855e-2dd5ccfe593f 9e920eb73f34265257d851fb99ad4b08 { 'aliquot_tag': 'ALQ_bd4f9162', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02957.MethArray.Green.T C3L-02957 LUAD Methylation Array tumor CPT0196880006 203220070154_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 85725044-8fa9-401b-9e87-e925d0cea228 d7f7c9def2449e907e2381107b1d26c1 { 'aliquot_tag': 'ALQ_46630906', 'gdc_sample_type': 'Primary Tumor' } C3L-02957.MethArray.Red.A C3L-02957 LUAD Methylation Array tissue_normal CPT0196900006 203219640133_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 5ee49171-905e-4550-bac5-6ac3d2643fbb 06d7f19fff8f6a8c5a1746d1eb4fc435 { 'aliquot_tag': 'ALQ_bd4f9162', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -12537,16 +13361,16 @@ C3L-02957.miRNA-Seq.A C3L-02957 LUAD miRNA-Seq tissue_normal CPT0196900009 19013 C3L-02957.miRNA-Seq.A.hg38 C3L-02957 LUAD miRNA-Seq tissue_normal CPT0196900009 057e8fb6-cdb0-45b6-9e69-e24e006bc0f3_mirnaseq_gdc_realn.bam 287319874 BAM harmonized CPTAC3 fffcfb42-fda8-4f11-be8c-5d92167cc748 ad89a3076dae3c661f84a383603be5a3 { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02957.miRNA-Seq.T C3L-02957 LUAD miRNA-Seq tumor CPT0196880009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L006_R1_001.unaln.bam 201491760 BAM unaligned CPTAC3 4beefb9d-7cc5-4d19-a1d7-82b2b5fbd57a 188ac89e4bb0463eb000d940981ba8f8 { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor' } C3L-02957.miRNA-Seq.T.hg38 C3L-02957 LUAD miRNA-Seq tumor CPT0196880009 a190ce63-a916-4074-ab9a-f3958230adee_mirnaseq_gdc_realn.bam 220111194 BAM harmonized CPTAC3 cc694ba2-8493-411b-a7b7-5da8147f3f47 e53ffff7a5feccaaa09617bf5fa2c8df { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor' } -C3L-02957.RNA-Seq.chimeric.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 89b5ec3d-e616-4b9d-9cf8-06bd298bdb95.rna_seq.chimeric.gdc_realn.bam 45281409 BAM chimeric harmonized CPTAC3 f7cd0c7b-09e8-4c21-83f8-47939d73be87 97db3904e8a7c6d6aaa7fbe956c5ab60 { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02957.RNA-Seq.chimeric.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 3caf0ee8-2089-4cde-856c-3b67281d061f.rna_seq.chimeric.gdc_realn.bam 56858481 BAM chimeric harmonized CPTAC3 46967635-cde3-4663-a851-5d9d159161dc c2362337e9d5191fc0c5f55f924f4c76 { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor' } -C3L-02957.RNA-Seq.genomic.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 89b5ec3d-e616-4b9d-9cf8-06bd298bdb95.rna_seq.genomic.gdc_realn.bam 9646418547 BAM genomic harmonized CPTAC3 62d860ab-0735-49ba-8bd5-6ed7a2be49ce 898c272d7fa1cd2e9c52c7a55c7f106a { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02957.RNA-Seq.genomic.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 3caf0ee8-2089-4cde-856c-3b67281d061f.rna_seq.genomic.gdc_realn.bam 9117646632 BAM genomic harmonized CPTAC3 e0c5fe65-e282-4111-977d-b0653be808e8 fc0125351a597dfcfb1c07228f6ff4b8 { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor' } -C3L-02957.RNA-Seq.R1_L006.A C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTTCC_S21_L006_R1_001.fastq.gz 3771405574 FASTQ R1_L006 unaligned CPTAC3 fe2a1780-a97f-4730-921f-0d4806d7ad9a d64787b8b43f11b9a3eec42a1d694960 { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02957.RNA-Seq.R1_L007.T C3L-02957 LUAD RNA-Seq tumor CPT0196880009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L007_R1_001.fastq.gz 4019741573 FASTQ R1_L007 unaligned CPTAC3 1d5b23ea-0d9c-4115-b397-755c7d3f3862 0ac7e139890ae6530176a5e7eecc12b2 { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor' } -C3L-02957.RNA-Seq.R2_L006.A C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTTCC_S21_L006_R2_001.fastq.gz 4215288236 FASTQ R2_L006 unaligned CPTAC3 4fa0153d-ac70-4270-a6e8-ba699b98466c 8bb3062fb45a8c62f257a89b097ed93f { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02957.RNA-Seq.R2_L007.T C3L-02957 LUAD RNA-Seq tumor CPT0196880009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L007_R2_001.fastq.gz 4479830400 FASTQ R2_L007 unaligned CPTAC3 112252ec-ef61-4004-8261-6cc86db28f69 200be89c6662a11c04e4107c6c4f1998 { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor' } -C3L-02957.RNA-Seq.transcriptome.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 89b5ec3d-e616-4b9d-9cf8-06bd298bdb95.rna_seq.transcriptome.gdc_realn.bam 8003060137 BAM transcriptome harmonized CPTAC3 f7767315-a898-4b54-bb65-7c6eb743300b 9df87132240bbfc6b71b5ad30ccbecd9 { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02957.RNA-Seq.transcriptome.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 3caf0ee8-2089-4cde-856c-3b67281d061f.rna_seq.transcriptome.gdc_realn.bam 8687149836 BAM transcriptome harmonized CPTAC3 35e3e0cc-26f0-45ec-a3ec-5820015640d4 3fbcc416e8279cb7a7a5d9ecae24931a { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor' } +C3L-02957.RNA-Seq.chimeric.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 80af3083-b971-47da-be99-4304f8d7f67d.rna_seq.chimeric.gdc_realn.bam 45264247 BAM chimeric harmonized CPTAC3 9129b3bc-d958-4b53-85d0-a84112641581 376efc7cb78112f3394a37e51bb0a744 { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02957.RNA-Seq.chimeric.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 9cc81dd5-7c14-4b43-bb10-2c43aecf2e78.rna_seq.chimeric.gdc_realn.bam 56881130 BAM chimeric harmonized CPTAC3 620a41bf-3d83-47e9-a75c-662bf51e6c22 281fc842f073d36292f2a74f69e7b42d { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor' } +C3L-02957.RNA-Seq.genomic.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 80af3083-b971-47da-be99-4304f8d7f67d.rna_seq.genomic.gdc_realn.bam 9646998771 BAM genomic harmonized CPTAC3 3f45ac34-ea34-4e48-9874-cb1609aff7fa afc90b2337d790861d61c682a66406cf { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02957.RNA-Seq.genomic.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 9cc81dd5-7c14-4b43-bb10-2c43aecf2e78.rna_seq.genomic.gdc_realn.bam 9120502222 BAM genomic harmonized CPTAC3 dbf95a4e-7577-4107-be46-cb0c60b5160d 00d9c84e21533f93aed821aae103abda { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor' } +C3L-02957.RNA-Seq.R1_L006.A C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTTCC_S21_L006_R1_001.fastq.gz 3771405574 FASTQ R1_L006 unaligned CPTAC3 fe2a1780-a97f-4730-921f-0d4806d7ad9a d64787b8b43f11b9a3eec42a1d694960 { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-02957.RNA-Seq.R1_L007.T C3L-02957 LUAD RNA-Seq tumor CPT0196880009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L007_R1_001.fastq.gz 4019741573 FASTQ R1_L007 unaligned CPTAC3 1d5b23ea-0d9c-4115-b397-755c7d3f3862 0ac7e139890ae6530176a5e7eecc12b2 { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02957.RNA-Seq.R2_L006.A C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTTCC_S21_L006_R2_001.fastq.gz 4215288236 FASTQ R2_L006 unaligned CPTAC3 4fa0153d-ac70-4270-a6e8-ba699b98466c 8bb3062fb45a8c62f257a89b097ed93f { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-02957.RNA-Seq.R2_L007.T C3L-02957 LUAD RNA-Seq tumor CPT0196880009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L007_R2_001.fastq.gz 4479830400 FASTQ R2_L007 unaligned CPTAC3 112252ec-ef61-4004-8261-6cc86db28f69 200be89c6662a11c04e4107c6c4f1998 { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-02957.RNA-Seq.transcriptome.A.hg38 C3L-02957 LUAD RNA-Seq tissue_normal CPT0196900009 80af3083-b971-47da-be99-4304f8d7f67d.rna_seq.transcriptome.gdc_realn.bam 8979150395 BAM transcriptome harmonized CPTAC3 c4cea052-6c04-45eb-8d50-d678a1dbf2e9 1ae6c4f4c1f5e700d8ecdc9e2af7a92f { 'aliquot_tag': 'ALQ_2df08cf3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02957.RNA-Seq.transcriptome.T.hg38 C3L-02957 LUAD RNA-Seq tumor CPT0196880009 9cc81dd5-7c14-4b43-bb10-2c43aecf2e78.rna_seq.transcriptome.gdc_realn.bam 9572549152 BAM transcriptome harmonized CPTAC3 a0e142f5-e9de-4800-a9a1-915647835c02 34623a31c06e8e699972774fef364dd0 { 'aliquot_tag': 'ALQ_d6dc1497', 'gdc_sample_type': 'Primary Tumor' } C3L-02957.WGS.A C3L-02957 LUAD WGS tissue_normal CPT0196900006 CPT0196900006.WholeGenome.RP-1303.bam 62173726655 BAM aligned CPTAC3 fdcd3ba4-ed0f-40f7-b9b4-c3e599fd86f9 c31fd5d570c78cfba893a5087708166d { 'aliquot_tag': 'ALQ_bd4f9162', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02957.WGS.A.hg38 C3L-02957 LUAD WGS tissue_normal CPT0196900006 7d996912-100d-4a38-9fcd-17a8c82f7c4c_wgs_gdc_realn.bam 91448878304 BAM harmonized CPTAC3 2255e3d0-8329-4c46-a133-ab49c6d8ddbd d78dcda3b64a5ed94f7a3a45b14aa20e { 'aliquot_tag': 'ALQ_bd4f9162', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02957.WGS.N C3L-02957 LUAD WGS blood_normal CPT0197790002 CPT0197790002.WholeGenome.RP-1303.bam 59017340714 BAM aligned CPTAC3 bdb342f0-b433-4dab-9277-62f1fac6a59a 8486f036067ab0f84ee4f408c1728935 { 'aliquot_tag': 'ALQ_2b4f5dce', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12567,16 +13391,16 @@ C3L-02958.miRNA-Seq.A C3L-02958 LUAD miRNA-Seq tissue_normal CPT0197000009 19071 C3L-02958.miRNA-Seq.A.hg38 C3L-02958 LUAD miRNA-Seq tissue_normal CPT0197000009 35722292-ad59-44d3-8634-4c03290412cc_mirnaseq_gdc_realn.bam 333231337 BAM harmonized CPTAC3 f6d74e92-ec0b-4552-b5c0-2bd2ca5b104e cbfded851654a7d4631139cb88218cdb { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02958.miRNA-Seq.T C3L-02958 LUAD miRNA-Seq tumor CPT0196990009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTCAA_S9_L005_R1_001.unaln.bam 206466491 BAM unaligned CPTAC3 f7c7fddd-b8ae-47e5-affd-9d23cbca044e 4e8e8c6248f686a566e3bed8c4931143 { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor' } C3L-02958.miRNA-Seq.T.hg38 C3L-02958 LUAD miRNA-Seq tumor CPT0196990009 557b980d-96f6-47a5-8d62-c3e4d6ceea10_mirnaseq_gdc_realn.bam 229292545 BAM harmonized CPTAC3 19f39a59-850c-46be-be3d-6260a3e5d711 68628e3cceabf91dd6514665133ad680 { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor' } -C3L-02958.RNA-Seq.chimeric.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 159388a0-d1ef-459b-9d46-83a10d1c3f70.rna_seq.chimeric.gdc_realn.bam 60371261 BAM chimeric harmonized CPTAC3 4301e13a-44ef-48df-91d9-6fc6a7e3c056 9b59ea17b3f7e534ba2ef93ce0b9e12b { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02958.RNA-Seq.chimeric.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 ce1ec41d-0ef0-4d78-9922-2bcd3f4fb2a5.rna_seq.chimeric.gdc_realn.bam 29750747 BAM chimeric harmonized CPTAC3 e07825e2-d52a-473e-9a35-d8f0051d6fba cdf16599ee45fd4b910b620e43b3fbb9 { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor' } -C3L-02958.RNA-Seq.genomic.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 159388a0-d1ef-459b-9d46-83a10d1c3f70.rna_seq.genomic.gdc_realn.bam 13032324229 BAM genomic harmonized CPTAC3 602b22b2-4eed-4c71-b39f-385735b90ad9 562c5cd86a5f69e77758ceecba3690f2 { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02958.RNA-Seq.genomic.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 ce1ec41d-0ef0-4d78-9922-2bcd3f4fb2a5.rna_seq.genomic.gdc_realn.bam 11517640396 BAM genomic harmonized CPTAC3 beddaa6c-bd4b-4305-ac14-bdcd4202cf99 d850ba66694101ccc292a2d738f8ba4b { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor' } -C3L-02958.RNA-Seq.R1_L003.T C3L-02958 LUAD RNA-Seq tumor CPT0196990009 190607_UNC32-K00270_0179_BH75W2BBXY_CCAAGTCT-AAGGATGA_S9_L003_R1_001.fastq.gz 3864631869 FASTQ R1_L003 unaligned CPTAC3 14b1c2dd-6162-42d0-bb84-df26086f43e8 a7a70d10b6e92749a70edac0cfc0c28a { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor' } -C3L-02958.RNA-Seq.R1_L008.A C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 190614_UNC32-K00270_0182_BH7777BBXY_TTATAACC-GATATCGA_S31_L008_R1_001.fastq.gz 5183993274 FASTQ R1_L008 unaligned CPTAC3 1b53936d-29f5-4f74-b341-97960b35d4c2 2e1992e0b06f3eacb78d7049c224858b { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02958.RNA-Seq.R2_L003.T C3L-02958 LUAD RNA-Seq tumor CPT0196990009 190607_UNC32-K00270_0179_BH75W2BBXY_CCAAGTCT-AAGGATGA_S9_L003_R2_001.fastq.gz 4313872569 FASTQ R2_L003 unaligned CPTAC3 e5dd7b54-f117-4957-a753-3fb5f3b21056 7ee9d4b57d46a27de1d23dd818437671 { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor' } -C3L-02958.RNA-Seq.R2_L008.A C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 190614_UNC32-K00270_0182_BH7777BBXY_TTATAACC-GATATCGA_S31_L008_R2_001.fastq.gz 5205588589 FASTQ R2_L008 unaligned CPTAC3 37efe146-d208-43ae-95eb-adeef2391160 2eda6ce210102f74ea63e5d6920ad3cf { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02958.RNA-Seq.transcriptome.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 159388a0-d1ef-459b-9d46-83a10d1c3f70.rna_seq.transcriptome.gdc_realn.bam 9792718551 BAM transcriptome harmonized CPTAC3 b79f8edc-1a73-4300-a165-6b4a883611fb 90f0805b087471ff1f7dbd4a9a7fbad8 { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02958.RNA-Seq.transcriptome.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 ce1ec41d-0ef0-4d78-9922-2bcd3f4fb2a5.rna_seq.transcriptome.gdc_realn.bam 7643113963 BAM transcriptome harmonized CPTAC3 5f9d1316-a79f-496a-ba54-dcab39a3e77e 153ee88bb969b64612a0508f4bef7ce7 { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor' } +C3L-02958.RNA-Seq.chimeric.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 8c32f0fc-e028-4ed8-bed3-5dfbcb542230.rna_seq.chimeric.gdc_realn.bam 60335680 BAM chimeric harmonized CPTAC3 1546351c-dc55-4b19-a6be-803c0d7762b1 dd5762cbc626455347a8e044b05b8c71 { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02958.RNA-Seq.chimeric.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 4a1148f6-4d72-40c6-a497-136fccdbaae8.rna_seq.chimeric.gdc_realn.bam 29747687 BAM chimeric harmonized CPTAC3 6e426495-d0f1-458d-a759-57d0594e4d5b f1c1a56de02ff3bbb43838c784e7eb79 { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor' } +C3L-02958.RNA-Seq.genomic.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 8c32f0fc-e028-4ed8-bed3-5dfbcb542230.rna_seq.genomic.gdc_realn.bam 13033245522 BAM genomic harmonized CPTAC3 367ca0c0-4cac-4634-8f5a-8d2a2d0a35b2 80016eacee3a7b0e6557dedd8dba3111 { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02958.RNA-Seq.genomic.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 4a1148f6-4d72-40c6-a497-136fccdbaae8.rna_seq.genomic.gdc_realn.bam 11518742467 BAM genomic harmonized CPTAC3 24b4c32e-75a7-4bef-808d-074e75e8c167 e27f45ec94853d0a4a9b0511589c46c7 { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor' } +C3L-02958.RNA-Seq.R1_L003.T C3L-02958 LUAD RNA-Seq tumor CPT0196990009 190607_UNC32-K00270_0179_BH75W2BBXY_CCAAGTCT-AAGGATGA_S9_L003_R1_001.fastq.gz 3864631869 FASTQ R1_L003 unaligned CPTAC3 14b1c2dd-6162-42d0-bb84-df26086f43e8 a7a70d10b6e92749a70edac0cfc0c28a { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02958.RNA-Seq.R1_L008.A C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 190614_UNC32-K00270_0182_BH7777BBXY_TTATAACC-GATATCGA_S31_L008_R1_001.fastq.gz 5183993274 FASTQ R1_L008 unaligned CPTAC3 1b53936d-29f5-4f74-b341-97960b35d4c2 2e1992e0b06f3eacb78d7049c224858b { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02958.RNA-Seq.R2_L003.T C3L-02958 LUAD RNA-Seq tumor CPT0196990009 190607_UNC32-K00270_0179_BH75W2BBXY_CCAAGTCT-AAGGATGA_S9_L003_R2_001.fastq.gz 4313872569 FASTQ R2_L003 unaligned CPTAC3 e5dd7b54-f117-4957-a753-3fb5f3b21056 7ee9d4b57d46a27de1d23dd818437671 { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02958.RNA-Seq.R2_L008.A C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 190614_UNC32-K00270_0182_BH7777BBXY_TTATAACC-GATATCGA_S31_L008_R2_001.fastq.gz 5205588589 FASTQ R2_L008 unaligned CPTAC3 37efe146-d208-43ae-95eb-adeef2391160 2eda6ce210102f74ea63e5d6920ad3cf { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02958.RNA-Seq.transcriptome.A.hg38 C3L-02958 LUAD RNA-Seq tissue_normal CPT0197000009 8c32f0fc-e028-4ed8-bed3-5dfbcb542230.rna_seq.transcriptome.gdc_realn.bam 11052934272 BAM transcriptome harmonized CPTAC3 ed997528-62a5-4af2-8a97-f5476c098500 bd52d8d89188ca67162fa5d87d1b43cf { 'aliquot_tag': 'ALQ_ac88d68f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02958.RNA-Seq.transcriptome.T.hg38 C3L-02958 LUAD RNA-Seq tumor CPT0196990009 4a1148f6-4d72-40c6-a497-136fccdbaae8.rna_seq.transcriptome.gdc_realn.bam 8715387821 BAM transcriptome harmonized CPTAC3 0535bf97-433f-4f92-8d1b-b30a1c5ec844 cc36dac89bf3ad230ad9733cccac6d4e { 'aliquot_tag': 'ALQ_20e0ee82', 'gdc_sample_type': 'Primary Tumor' } C3L-02958.WGS.N C3L-02958 LUAD WGS blood_normal CPT0197810002 CPT0197810002.WholeGenome.RP-1303.bam 67761141074 BAM aligned CPTAC3 f296b9c0-4297-4f8f-aa9a-1f2339570abb ad4f96bcfaab7148d6fa3c81efb6ecc7 { 'aliquot_tag': 'ALQ_ea69a4da', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02958.WGS.N.hg38 C3L-02958 LUAD WGS blood_normal CPT0197810002 cd9a2260-db53-4671-b48d-94520a44c979_wgs_gdc_realn.bam 98028187161 BAM harmonized CPTAC3 55241e08-8bbf-4c5f-9078-0f3a422e567d 2bf6b980906e9aab56c0a472396d6dc8 { 'aliquot_tag': 'ALQ_ea69a4da', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02958.WGS.T C3L-02958 LUAD WGS tumor CPT0196990006 CPT0196990006.WholeGenome.RP-1303.bam 76509174772 BAM aligned CPTAC3 5a92e75c-4a74-4ca5-a4bb-c6f935a4291e f5b51e519abed42817d2973c7248ec43 { 'aliquot_tag': 'ALQ_b05ff313', 'gdc_sample_type': 'Primary Tumor' } @@ -12595,16 +13419,16 @@ C3L-02961.miRNA-Seq.A C3L-02961 LUAD miRNA-Seq tissue_normal CPT0196960009 19071 C3L-02961.miRNA-Seq.A.hg38 C3L-02961 LUAD miRNA-Seq tissue_normal CPT0196960009 655bd47b-81dc-4ce6-91dd-bdc64947b387_mirnaseq_gdc_realn.bam 223601377 BAM harmonized CPTAC3 3c89c82b-52a4-40d4-b23f-d17851f01600 096924ace8bdc1c0c56076216cc64246 { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02961.miRNA-Seq.T C3L-02961 LUAD miRNA-Seq tumor CPT0196950009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTTGTA_S8_L005_R1_001.unaln.bam 233398461 BAM unaligned CPTAC3 d71c2b2a-bde4-41ba-9fd1-da1c42616650 9d375cf017bcad2843ca5643cb0cb804 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor' } C3L-02961.miRNA-Seq.T.hg38 C3L-02961 LUAD miRNA-Seq tumor CPT0196950009 fc4b3ef8-0c55-4aa3-9453-381d17e1e0b0_mirnaseq_gdc_realn.bam 260085247 BAM harmonized CPTAC3 52992437-3bcd-4bab-8337-25e6776a10b3 0c1e5de963ce4e534261353f9ea57a22 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor' } -C3L-02961.RNA-Seq.chimeric.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 95e36b06-b4bc-4df5-8022-e7625074d99e.rna_seq.chimeric.gdc_realn.bam 54919320 BAM chimeric harmonized CPTAC3 b430ad90-26a0-4577-82dc-0cf19da6acfa 90148441bde73d0a7ece0d0cba30e752 { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02961.RNA-Seq.chimeric.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 495ec1dc-2784-4080-8dae-60f26c5265f1.rna_seq.chimeric.gdc_realn.bam 25052241 BAM chimeric harmonized CPTAC3 ff4374c6-c58b-4d9d-adf3-39f39d7dd306 7b0b9ca50c79d8c8aa26c9f13aa866a2 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor' } -C3L-02961.RNA-Seq.genomic.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 95e36b06-b4bc-4df5-8022-e7625074d99e.rna_seq.genomic.gdc_realn.bam 12409858427 BAM genomic harmonized CPTAC3 bb84849d-8d86-4cc7-9fd6-6222898653ad 373ac24ebf2dacab3d3c86f7777207cb { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02961.RNA-Seq.genomic.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 495ec1dc-2784-4080-8dae-60f26c5265f1.rna_seq.genomic.gdc_realn.bam 12708533474 BAM genomic harmonized CPTAC3 7aed7f81-6edb-43c9-b719-3d31243aa1c7 ddee98712d93332c63e037f1b1d01ea3 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor' } -C3L-02961.RNA-Seq.R1_L004.T C3L-02961 LUAD RNA-Seq tumor CPT0196950009 190607_UNC32-K00270_0179_BH75W2BBXY_CTCTCGTC-TATAACCT_S16_L004_R1_001.fastq.gz 3808981603 FASTQ R1_L004 unaligned CPTAC3 d448ca06-c2ad-4551-ab78-26cd39c8ef1a 623584f050e1b54f3c952db5ec3dec86 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor' } -C3L-02961.RNA-Seq.R1_L008.A C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 190614_UNC32-K00270_0182_BH7777BBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 4480977840 FASTQ R1_L008 unaligned CPTAC3 75b7824a-d69a-4063-a390-8d370f4555db 1726956b5b1e9d8b4563755edf49793a { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02961.RNA-Seq.R2_L004.T C3L-02961 LUAD RNA-Seq tumor CPT0196950009 190607_UNC32-K00270_0179_BH75W2BBXY_CTCTCGTC-TATAACCT_S16_L004_R2_001.fastq.gz 4358810970 FASTQ R2_L004 unaligned CPTAC3 154f290e-a3a4-4131-8625-d87ee785e196 b9a83ea3b930795b5a93fae2b13e1473 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor' } -C3L-02961.RNA-Seq.R2_L008.A C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 190614_UNC32-K00270_0182_BH7777BBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4951711704 FASTQ R2_L008 unaligned CPTAC3 63b49848-ecb2-4542-852c-fee42dc98479 4a929ee9b4696d4f77abca69dafbc5de { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02961.RNA-Seq.transcriptome.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 95e36b06-b4bc-4df5-8022-e7625074d99e.rna_seq.transcriptome.gdc_realn.bam 8559786994 BAM transcriptome harmonized CPTAC3 ce06ee1c-9d3d-48e2-87f2-635f97e38761 1cb6bf9c23f775a00e00d1a39e059df0 { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02961.RNA-Seq.transcriptome.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 495ec1dc-2784-4080-8dae-60f26c5265f1.rna_seq.transcriptome.gdc_realn.bam 7788850758 BAM transcriptome harmonized CPTAC3 bcb71cdb-49c4-4b3a-9567-f93c0952846e c5f9f373e4f68d3d02953198ef037344 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor' } +C3L-02961.RNA-Seq.chimeric.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 5d26e41a-5715-4360-a73b-bd3ac9f539aa.rna_seq.chimeric.gdc_realn.bam 54904097 BAM chimeric harmonized CPTAC3 7789a385-3c9a-4083-8d84-63b514dd28b1 ce2928cdc596e31d8d21f5ad5b0f4480 { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02961.RNA-Seq.chimeric.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 c87f02c2-72df-4a69-8e6e-166f52440dda.rna_seq.chimeric.gdc_realn.bam 25040421 BAM chimeric harmonized CPTAC3 5270cf41-a45b-482d-a4b2-93498e04c252 1f415d0d8ef091c43d1858eb2399292e { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor' } +C3L-02961.RNA-Seq.genomic.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 5d26e41a-5715-4360-a73b-bd3ac9f539aa.rna_seq.genomic.gdc_realn.bam 12410841530 BAM genomic harmonized CPTAC3 217cd573-f498-4222-a248-7f557e0d592c 64195f26b14eadace3d2e8af7669291b { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02961.RNA-Seq.genomic.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 c87f02c2-72df-4a69-8e6e-166f52440dda.rna_seq.genomic.gdc_realn.bam 12708844800 BAM genomic harmonized CPTAC3 314b763d-2ad1-4849-8d3b-1da3ea2ba17f 7ae8957e7db9283f3f4de974d0bc7445 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor' } +C3L-02961.RNA-Seq.R1_L004.T C3L-02961 LUAD RNA-Seq tumor CPT0196950009 190607_UNC32-K00270_0179_BH75W2BBXY_CTCTCGTC-TATAACCT_S16_L004_R1_001.fastq.gz 3808981603 FASTQ R1_L004 unaligned CPTAC3 d448ca06-c2ad-4551-ab78-26cd39c8ef1a 623584f050e1b54f3c952db5ec3dec86 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-02961.RNA-Seq.R1_L008.A C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 190614_UNC32-K00270_0182_BH7777BBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 4480977840 FASTQ R1_L008 unaligned CPTAC3 75b7824a-d69a-4063-a390-8d370f4555db 1726956b5b1e9d8b4563755edf49793a { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-02961.RNA-Seq.R2_L004.T C3L-02961 LUAD RNA-Seq tumor CPT0196950009 190607_UNC32-K00270_0179_BH75W2BBXY_CTCTCGTC-TATAACCT_S16_L004_R2_001.fastq.gz 4358810970 FASTQ R2_L004 unaligned CPTAC3 154f290e-a3a4-4131-8625-d87ee785e196 b9a83ea3b930795b5a93fae2b13e1473 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-02961.RNA-Seq.R2_L008.A C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 190614_UNC32-K00270_0182_BH7777BBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4951711704 FASTQ R2_L008 unaligned CPTAC3 63b49848-ecb2-4542-852c-fee42dc98479 4a929ee9b4696d4f77abca69dafbc5de { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-02961.RNA-Seq.transcriptome.A.hg38 C3L-02961 LUAD RNA-Seq tissue_normal CPT0196960009 5d26e41a-5715-4360-a73b-bd3ac9f539aa.rna_seq.transcriptome.gdc_realn.bam 9645896874 BAM transcriptome harmonized CPTAC3 91dd2cbb-b9cb-4531-9cce-4329cd6a9f13 31415a60afc546ec5dd3f8a637a041cf { 'aliquot_tag': 'ALQ_a2b07953', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02961.RNA-Seq.transcriptome.T.hg38 C3L-02961 LUAD RNA-Seq tumor CPT0196950009 c87f02c2-72df-4a69-8e6e-166f52440dda.rna_seq.transcriptome.gdc_realn.bam 8730294393 BAM transcriptome harmonized CPTAC3 c239c648-b164-4b92-8f76-5cb806da1821 9208c4745bbbf1c66406fb0456181071 { 'aliquot_tag': 'ALQ_e5100383', 'gdc_sample_type': 'Primary Tumor' } C3L-02961.WGS.N C3L-02961 LUAD WGS blood_normal CPT0197800002 CPT0197800002.WholeGenome.RP-1303.bam 72036266318 BAM aligned CPTAC3 27b9be0b-3f1e-4ab9-9f4c-c4f41214abb2 68cff7329e09ecc0af23bced79bdd42a { 'aliquot_tag': 'ALQ_d7098d6a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02961.WGS.N.hg38 C3L-02961 LUAD WGS blood_normal CPT0197800002 c1c3c1de-a5f4-431c-8fa8-bd974fe429d8_wgs_gdc_realn.bam 104998787194 BAM harmonized CPTAC3 da100a30-a64a-4279-8732-0f0bd5fe3a54 362fb24b17340fc7bf0c17358ef098ac { 'aliquot_tag': 'ALQ_d7098d6a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02961.WGS.T C3L-02961 LUAD WGS tumor CPT0196950006 CPT0196950006.WholeGenome.RP-1303.bam 69867540035 BAM aligned CPTAC3 bf71d693-1a5b-44e9-ba27-fc4ecca96594 a5a8e590308bc3dd1d2ebddf3e44cc43 { 'aliquot_tag': 'ALQ_75af1e12', 'gdc_sample_type': 'Primary Tumor' } @@ -12626,11 +13450,11 @@ C3L-02963.miRNA-Seq.T.hg38 C3L-02963 LSCC miRNA-Seq tumor CPT0197090006 bd5a2c49 C3L-02963.RNA-Seq.chimeric.A.hg38 C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 710a199c-93a1-463b-8f09-8cba6f15eb77.rna_seq.chimeric.gdc_realn.bam 108021122 BAM chimeric harmonized CPTAC3 a66db302-c030-4c66-8c9f-5071f93008b9 718f9775b650d63e35becdbcdf3504fc { 'aliquot_tag': 'ALQ_f76b18bb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02963.RNA-Seq.chimeric.T.hg38 C3L-02963 LSCC RNA-Seq tumor CPT0197090006 0208b391-bf17-49df-b81c-0b1eff79f167.rna_seq.chimeric.gdc_realn.bam 94339648 BAM chimeric harmonized CPTAC3 e84fffbc-adc6-4d86-aa73-c4cbcf38b686 a2c27232d0aa903d7ccd3bb522eec1ac { 'aliquot_tag': 'ALQ_3127a96f', 'gdc_sample_type': 'Primary Tumor' } C3L-02963.RNA-Seq.genomic.A.hg38 C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 710a199c-93a1-463b-8f09-8cba6f15eb77.rna_seq.genomic.gdc_realn.bam 8198633178 BAM genomic harmonized CPTAC3 87a66698-57fd-4c87-a67b-df1638f37c89 3939783ee138ab5f1ca44f94baeb5883 { 'aliquot_tag': 'ALQ_f76b18bb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02963.RNA-Seq.genomic.T.hg38 C3L-02963 LSCC RNA-Seq tumor CPT0197090006 0208b391-bf17-49df-b81c-0b1eff79f167.rna_seq.genomic.gdc_realn.bam 8010242159 BAM genomic harmonized CPTAC3 2634163b-55fd-44dc-a238-ce1b4b1a5941 0c27ec6bd33665033ce78e6523cd888c { 'aliquot_tag': 'ALQ_3127a96f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02963.RNA-Seq.R1_L005.A C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 3362326554 FASTQ R1_L005 unaligned CPTAC3 9ed7af65-3342-43c4-be81-f609625b6153 679cbde74712996bd7c1d353ac3a0070 { 'aliquot_tag': 'ALQ_f76b18bb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02963.RNA-Seq.R1_L006.T C3L-02963 LSCC RNA-Seq tumor CPT0197090006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTTTCG_S30_L006_R1_001.fastq.gz 3421272162 FASTQ R1_L006 unaligned CPTAC3 c34ead20-5eb9-48b5-aef8-ce1542b51292 e87986e430bae3be2589394259fbde26 { 'aliquot_tag': 'ALQ_3127a96f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02963.RNA-Seq.R2_L005.A C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 3588435842 FASTQ R2_L005 unaligned CPTAC3 25e91e4f-a859-48cb-ab59-0a0886ca1850 85076ea04e9f7b1f15af0c2ddaef6097 { 'aliquot_tag': 'ALQ_f76b18bb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02963.RNA-Seq.R2_L006.T C3L-02963 LSCC RNA-Seq tumor CPT0197090006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTTTCG_S30_L006_R2_001.fastq.gz 3611986950 FASTQ R2_L006 unaligned CPTAC3 07f8ab30-2bea-4757-ae30-54cc3cf7e852 b2c6f467f52d6297bdc4d77827eb0f66 { 'aliquot_tag': 'ALQ_3127a96f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02963.RNA-Seq.genomic.T.hg38 C3L-02963 LSCC RNA-Seq tumor CPT0197090006 0208b391-bf17-49df-b81c-0b1eff79f167.rna_seq.genomic.gdc_realn.bam 8010242159 BAM genomic harmonized CPTAC3 f2cc4b91-cc6d-4312-a987-f3cafd1477ef 0c27ec6bd33665033ce78e6523cd888c { 'aliquot_tag': 'ALQ_3127a96f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02963.RNA-Seq.R1_L005.A C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 3362326554 FASTQ R1_L005 unaligned CPTAC3 9ed7af65-3342-43c4-be81-f609625b6153 679cbde74712996bd7c1d353ac3a0070 { 'aliquot_tag': 'ALQ_f76b18bb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02963.RNA-Seq.R1_L006.T C3L-02963 LSCC RNA-Seq tumor CPT0197090006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTTTCG_S30_L006_R1_001.fastq.gz 3421272162 FASTQ R1_L006 unaligned CPTAC3 c34ead20-5eb9-48b5-aef8-ce1542b51292 e87986e430bae3be2589394259fbde26 { 'aliquot_tag': 'ALQ_3127a96f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02963.RNA-Seq.R2_L005.A C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 3588435842 FASTQ R2_L005 unaligned CPTAC3 25e91e4f-a859-48cb-ab59-0a0886ca1850 85076ea04e9f7b1f15af0c2ddaef6097 { 'aliquot_tag': 'ALQ_f76b18bb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02963.RNA-Seq.R2_L006.T C3L-02963 LSCC RNA-Seq tumor CPT0197090006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTTTCG_S30_L006_R2_001.fastq.gz 3611986950 FASTQ R2_L006 unaligned CPTAC3 07f8ab30-2bea-4757-ae30-54cc3cf7e852 b2c6f467f52d6297bdc4d77827eb0f66 { 'aliquot_tag': 'ALQ_3127a96f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02963.RNA-Seq.transcriptome.A.hg38 C3L-02963 LSCC RNA-Seq tissue_normal CPT0197100006 710a199c-93a1-463b-8f09-8cba6f15eb77.rna_seq.transcriptome.gdc_realn.bam 8633239144 BAM transcriptome harmonized CPTAC3 d70ddddb-8816-4917-b2b8-00bf33882305 c3b12506e76a9f1d11836420dc27bb71 { 'aliquot_tag': 'ALQ_f76b18bb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02963.RNA-Seq.transcriptome.T.hg38 C3L-02963 LSCC RNA-Seq tumor CPT0197090006 0208b391-bf17-49df-b81c-0b1eff79f167.rna_seq.transcriptome.gdc_realn.bam 9754607375 BAM transcriptome harmonized CPTAC3 3f065edc-b6cd-4899-a0ff-059ab6704dd8 65fd35a0b4b753e7fc6d962499ffc40e { 'aliquot_tag': 'ALQ_3127a96f', 'gdc_sample_type': 'Primary Tumor' } C3L-02963.WGS.A C3L-02963 LSCC WGS tissue_normal CPT0197100009 CPT0197100009.WholeGenome.RP-1303.bam 56969060954 BAM aligned CPTAC3 e2f86765-b9bd-47db-b47b-2b8155fbfae5 7bbe1d492aa6180d981b8025ce06836a { 'aliquot_tag': 'ALQ_67d4052a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -12656,11 +13480,11 @@ C3L-02964.miRNA-Seq.T.hg38 C3L-02964 LSCC miRNA-Seq tumor CPT0197210009 45517893 C3L-02964.RNA-Seq.chimeric.A.hg38 C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 87532533-92ae-4001-a36d-c42645471382.rna_seq.chimeric.gdc_realn.bam 115958371 BAM chimeric harmonized CPTAC3 68eb45d6-0385-4481-9874-c751ca6f9c63 ca4afb47d676e4d957355aa54f5553c9 { 'aliquot_tag': 'ALQ_8ad3f271', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02964.RNA-Seq.chimeric.T.hg38 C3L-02964 LSCC RNA-Seq tumor CPT0197210009 88441590-9b57-4996-ad33-bed2f2a45174.rna_seq.chimeric.gdc_realn.bam 195956383 BAM chimeric harmonized CPTAC3 d2ce5a52-dfad-4f7a-a43f-a1c3ba572dcd 2477b06244d3eaa25fb37e06ec49d7e3 { 'aliquot_tag': 'ALQ_dc205e34', 'gdc_sample_type': 'Primary Tumor' } C3L-02964.RNA-Seq.genomic.A.hg38 C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 87532533-92ae-4001-a36d-c42645471382.rna_seq.genomic.gdc_realn.bam 9505753062 BAM genomic harmonized CPTAC3 25420204-d26c-4209-8e71-059804aea046 3f734c9f4f881d5667ccfdef338f9d73 { 'aliquot_tag': 'ALQ_8ad3f271', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02964.RNA-Seq.genomic.T.hg38 C3L-02964 LSCC RNA-Seq tumor CPT0197210009 88441590-9b57-4996-ad33-bed2f2a45174.rna_seq.genomic.gdc_realn.bam 8140981371 BAM genomic harmonized CPTAC3 5148bb4b-eb9f-437f-9831-6a44f0095cb2 8b25c0dde6fdb7d35be73bbe56b21cdb { 'aliquot_tag': 'ALQ_dc205e34', 'gdc_sample_type': 'Primary Tumor' } -C3L-02964.RNA-Seq.R1_L001.T C3L-02964 LSCC RNA-Seq tumor CPT0197210009 181207_UNC32-K00270_0136_AH2N7LBBXY_CAGATC_S1_L001_R1_001.fastq.gz 3331836713 FASTQ R1_L001 unaligned CPTAC3 0e4a24f6-ddd1-451e-a9ef-e9f49e685cd8 92a27742d899ed6c36b4f34490de454d { 'aliquot_tag': 'ALQ_dc205e34', 'gdc_sample_type': 'Primary Tumor' } -C3L-02964.RNA-Seq.R1_L007.A C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L007_R1_001.fastq.gz 4514200502 FASTQ R1_L007 unaligned CPTAC3 6693c8a1-f9d6-4ff3-b904-6956c6663a19 06c86ec29b1600f678d21254763fdda1 { 'aliquot_tag': 'ALQ_8ad3f271', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02964.RNA-Seq.R2_L001.T C3L-02964 LSCC RNA-Seq tumor CPT0197210009 181207_UNC32-K00270_0136_AH2N7LBBXY_CAGATC_S1_L001_R2_001.fastq.gz 3672437349 FASTQ R2_L001 unaligned CPTAC3 aa6beb8f-cdd3-4185-9b2c-0590b814980d 4c23069a4babdd17eb2e6a53109a67cf { 'aliquot_tag': 'ALQ_dc205e34', 'gdc_sample_type': 'Primary Tumor' } -C3L-02964.RNA-Seq.R2_L007.A C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L007_R2_001.fastq.gz 4656197876 FASTQ R2_L007 unaligned CPTAC3 b3dd5ec6-e199-4959-ac8e-a722c0ef9784 37261c5e40be54b68eb70bb6e43d28d5 { 'aliquot_tag': 'ALQ_8ad3f271', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02964.RNA-Seq.genomic.T.hg38 C3L-02964 LSCC RNA-Seq tumor CPT0197210009 88441590-9b57-4996-ad33-bed2f2a45174.rna_seq.genomic.gdc_realn.bam 8140981371 BAM genomic harmonized CPTAC3 b99a7247-1ac7-4403-bc90-cdccef5f454f 8b25c0dde6fdb7d35be73bbe56b21cdb { 'aliquot_tag': 'ALQ_dc205e34', 'gdc_sample_type': 'Primary Tumor' } +C3L-02964.RNA-Seq.R1_L001.T C3L-02964 LSCC RNA-Seq tumor CPT0197210009 181207_UNC32-K00270_0136_AH2N7LBBXY_CAGATC_S1_L001_R1_001.fastq.gz 3331836713 FASTQ R1_L001 unaligned CPTAC3 0e4a24f6-ddd1-451e-a9ef-e9f49e685cd8 92a27742d899ed6c36b4f34490de454d { 'aliquot_tag': 'ALQ_dc205e34', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02964.RNA-Seq.R1_L007.A C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L007_R1_001.fastq.gz 4514200502 FASTQ R1_L007 unaligned CPTAC3 6693c8a1-f9d6-4ff3-b904-6956c6663a19 06c86ec29b1600f678d21254763fdda1 { 'aliquot_tag': 'ALQ_8ad3f271', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-02964.RNA-Seq.R2_L001.T C3L-02964 LSCC RNA-Seq tumor CPT0197210009 181207_UNC32-K00270_0136_AH2N7LBBXY_CAGATC_S1_L001_R2_001.fastq.gz 3672437349 FASTQ R2_L001 unaligned CPTAC3 aa6beb8f-cdd3-4185-9b2c-0590b814980d 4c23069a4babdd17eb2e6a53109a67cf { 'aliquot_tag': 'ALQ_dc205e34', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-02964.RNA-Seq.R2_L007.A C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L007_R2_001.fastq.gz 4656197876 FASTQ R2_L007 unaligned CPTAC3 b3dd5ec6-e199-4959-ac8e-a722c0ef9784 37261c5e40be54b68eb70bb6e43d28d5 { 'aliquot_tag': 'ALQ_8ad3f271', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-02964.RNA-Seq.transcriptome.A.hg38 C3L-02964 LSCC RNA-Seq tissue_normal CPT0197380006 87532533-92ae-4001-a36d-c42645471382.rna_seq.transcriptome.gdc_realn.bam 13230782160 BAM transcriptome harmonized CPTAC3 499d28ee-4d16-494f-8129-37670f072d92 8bd777ab70d7c29af556dfb2b0485a1a { 'aliquot_tag': 'ALQ_8ad3f271', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02964.RNA-Seq.transcriptome.T.hg38 C3L-02964 LSCC RNA-Seq tumor CPT0197210009 88441590-9b57-4996-ad33-bed2f2a45174.rna_seq.transcriptome.gdc_realn.bam 8469594906 BAM transcriptome harmonized CPTAC3 838abb22-7d1d-4f3d-b957-e106267287a2 d26555e697c7459770736aa956a9bbc6 { 'aliquot_tag': 'ALQ_dc205e34', 'gdc_sample_type': 'Primary Tumor' } C3L-02964.WGS.A C3L-02964 LSCC WGS tissue_normal CPT0197380009 CPT0197380009.WholeGenome.RP-1303.bam 63916710229 BAM aligned CPTAC3 6ab20263-8a1e-41b7-ba50-0b53763bd588 cc2d94a68347eea3aaa758d1b6d60890 { 'aliquot_tag': 'ALQ_1a6cefe0', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -12683,16 +13507,16 @@ C3L-02967.miRNA-Seq.A C3L-02967 LUAD miRNA-Seq tissue_normal CPT0218500009 19071 C3L-02967.miRNA-Seq.A.hg38 C3L-02967 LUAD miRNA-Seq tissue_normal CPT0218500009 00700717-7b35-48d5-acf7-1902dc2d7b2b_mirnaseq_gdc_realn.bam 208942259 BAM harmonized CPTAC3 369c9649-fff8-41b2-add9-8dc31fe4fb3c 8d1fa018077cc342db868b2075c850dd { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02967.miRNA-Seq.T C3L-02967 LUAD miRNA-Seq tumor CPT0218490009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATGTCA_S11_L005_R1_001.unaln.bam 196211259 BAM unaligned CPTAC3 fd931b3c-dc4b-4347-9e64-7bae6680fbe0 113e35f91854a9d98f51d9d8c0af72b5 { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor' } C3L-02967.miRNA-Seq.T.hg38 C3L-02967 LUAD miRNA-Seq tumor CPT0218490009 8ee77852-ed97-4596-bf5a-ab92559ac741_mirnaseq_gdc_realn.bam 212457070 BAM harmonized CPTAC3 94819d20-a95f-4b98-8aae-c6c6a1e61a7c af56f59c0fdd7fcdea5a2750d06c699a { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor' } -C3L-02967.RNA-Seq.chimeric.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 66106f12-e890-4759-9e55-264362c121f4.rna_seq.chimeric.gdc_realn.bam 41480362 BAM chimeric harmonized CPTAC3 cc22fdbe-5d53-452d-ae7c-d08874682699 3eeda33cf8c255a7d1a3cede56f80b8f { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02967.RNA-Seq.chimeric.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 003f78e5-f848-4a34-9a8c-844be9b9d5a1.rna_seq.chimeric.gdc_realn.bam 34959773 BAM chimeric harmonized CPTAC3 590aaba7-322f-49fe-b5bd-d293fe5f6771 e78afa5edcb449d6d0716de6ff7a185b { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor' } -C3L-02967.RNA-Seq.genomic.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 66106f12-e890-4759-9e55-264362c121f4.rna_seq.genomic.gdc_realn.bam 11806773680 BAM genomic harmonized CPTAC3 86b3ad86-f6f8-4105-a763-c0f66f726f38 87690cf248ac7ec2ddd1f4bb966a4420 { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02967.RNA-Seq.genomic.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 003f78e5-f848-4a34-9a8c-844be9b9d5a1.rna_seq.genomic.gdc_realn.bam 12176275006 BAM genomic harmonized CPTAC3 cc100d83-d2ef-4074-b76b-aaee444a3a80 af852f74de9f536fb2e213ba5caca5ec { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor' } -C3L-02967.RNA-Seq.R1_L003.T C3L-02967 LUAD RNA-Seq tumor CPT0218490009 190607_UNC32-K00270_0179_BH75W2BBXY_GGCTTAAG-TCGTGACC_S10_L003_R1_001.fastq.gz 4161878553 FASTQ R1_L003 unaligned CPTAC3 2cf2a401-36f9-49ac-87f6-125f89c26268 be8fa5c3365c5cad6d1cd44bbeb7f1b9 { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor' } -C3L-02967.RNA-Seq.R1_L006.A C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGTCCAA-TATGAGTA_S21_L006_R1_001.fastq.gz 4406019809 FASTQ R1_L006 unaligned CPTAC3 ab5129cc-bf87-45e1-b6d3-6bf0f788da3b c5713abf65be689017412a5b649b103b { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02967.RNA-Seq.R2_L003.T C3L-02967 LUAD RNA-Seq tumor CPT0218490009 190607_UNC32-K00270_0179_BH75W2BBXY_GGCTTAAG-TCGTGACC_S10_L003_R2_001.fastq.gz 4413973501 FASTQ R2_L003 unaligned CPTAC3 ff3cb211-2b49-4377-8d4a-e4c59c5ba8cf f5b95b2ab00b4fdc9dba8cc6fae19151 { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor' } -C3L-02967.RNA-Seq.R2_L006.A C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGTCCAA-TATGAGTA_S21_L006_R2_001.fastq.gz 4588269752 FASTQ R2_L006 unaligned CPTAC3 802a81dc-79d1-4070-be3c-98ce862c5549 cfa7f35ed8dad53586e1996902f5d507 { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02967.RNA-Seq.transcriptome.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 66106f12-e890-4759-9e55-264362c121f4.rna_seq.transcriptome.gdc_realn.bam 8008837652 BAM transcriptome harmonized CPTAC3 7221b1bd-b378-499f-9396-3d2e993acd44 b5f33b9f03d2a2e16616207c8f0ae40e { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02967.RNA-Seq.transcriptome.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 003f78e5-f848-4a34-9a8c-844be9b9d5a1.rna_seq.transcriptome.gdc_realn.bam 7748828948 BAM transcriptome harmonized CPTAC3 c45d23d4-789e-442e-ad8a-958b79202889 53921ad04888c5fa7d3f3db760a8d985 { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor' } +C3L-02967.RNA-Seq.chimeric.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 35ef5664-e51a-43c4-bb80-06f97c83210b.rna_seq.chimeric.gdc_realn.bam 41469820 BAM chimeric harmonized CPTAC3 449b94c0-47db-4d75-b6dd-2bd10ee066f2 c670c7f2461941c224eb72392af81b51 { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02967.RNA-Seq.chimeric.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 12661709-d8d0-406d-9b39-4a09651f561b.rna_seq.chimeric.gdc_realn.bam 34962000 BAM chimeric harmonized CPTAC3 fec81d1a-bf90-45cb-9358-1fe0cd66425e 89da451a78bb69b98f2a1f6a273a5081 { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor' } +C3L-02967.RNA-Seq.genomic.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 35ef5664-e51a-43c4-bb80-06f97c83210b.rna_seq.genomic.gdc_realn.bam 11807848963 BAM genomic harmonized CPTAC3 d0c6d64b-b80c-4796-b25d-619e5ea3a2a5 00f80fcf2a2bbfae2bec9dd277c0c801 { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02967.RNA-Seq.genomic.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 12661709-d8d0-406d-9b39-4a09651f561b.rna_seq.genomic.gdc_realn.bam 12177490984 BAM genomic harmonized CPTAC3 ccb95db5-f7f3-4459-9a79-7e6038289f07 41fe9f113cddc1eec9ba67244251422a { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor' } +C3L-02967.RNA-Seq.R1_L003.T C3L-02967 LUAD RNA-Seq tumor CPT0218490009 190607_UNC32-K00270_0179_BH75W2BBXY_GGCTTAAG-TCGTGACC_S10_L003_R1_001.fastq.gz 4161878553 FASTQ R1_L003 unaligned CPTAC3 2cf2a401-36f9-49ac-87f6-125f89c26268 be8fa5c3365c5cad6d1cd44bbeb7f1b9 { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-02967.RNA-Seq.R1_L006.A C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGTCCAA-TATGAGTA_S21_L006_R1_001.fastq.gz 4406019809 FASTQ R1_L006 unaligned CPTAC3 ab5129cc-bf87-45e1-b6d3-6bf0f788da3b c5713abf65be689017412a5b649b103b { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-02967.RNA-Seq.R2_L003.T C3L-02967 LUAD RNA-Seq tumor CPT0218490009 190607_UNC32-K00270_0179_BH75W2BBXY_GGCTTAAG-TCGTGACC_S10_L003_R2_001.fastq.gz 4413973501 FASTQ R2_L003 unaligned CPTAC3 ff3cb211-2b49-4377-8d4a-e4c59c5ba8cf f5b95b2ab00b4fdc9dba8cc6fae19151 { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-02967.RNA-Seq.R2_L006.A C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 190715_UNC31-K00269_0232_BH7H7CBBXY_AAGTCCAA-TATGAGTA_S21_L006_R2_001.fastq.gz 4588269752 FASTQ R2_L006 unaligned CPTAC3 802a81dc-79d1-4070-be3c-98ce862c5549 cfa7f35ed8dad53586e1996902f5d507 { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-02967.RNA-Seq.transcriptome.A.hg38 C3L-02967 LUAD RNA-Seq tissue_normal CPT0218500009 35ef5664-e51a-43c4-bb80-06f97c83210b.rna_seq.transcriptome.gdc_realn.bam 9010568866 BAM transcriptome harmonized CPTAC3 1e147efc-f6ec-45c9-9677-2de00cf9193d 38bb7f667adb6c3b05378b48df323c3d { 'aliquot_tag': 'ALQ_e06510a5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02967.RNA-Seq.transcriptome.T.hg38 C3L-02967 LUAD RNA-Seq tumor CPT0218490009 12661709-d8d0-406d-9b39-4a09651f561b.rna_seq.transcriptome.gdc_realn.bam 8574099551 BAM transcriptome harmonized CPTAC3 ab5b3555-b651-41ec-8a78-f9fb6bbd377c 18dc38eeb709937326889795fa746ed5 { 'aliquot_tag': 'ALQ_2629a171', 'gdc_sample_type': 'Primary Tumor' } C3L-02967.WGS.N C3L-02967 LUAD WGS blood_normal CPT0219900002 CPT0219900002.WholeGenome.RP-1303.bam 70923878346 BAM aligned CPTAC3 267e36a1-282a-4262-9db3-fb57c90b369a 0b111f1ac1d9c65d6f52b15c25b5b502 { 'aliquot_tag': 'ALQ_a60202e2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02967.WGS.N.hg38 C3L-02967 LUAD WGS blood_normal CPT0219900002 1a7cb785-23a5-4eb8-9a8a-9ba39041f794_wgs_gdc_realn.bam 103401256299 BAM harmonized CPTAC3 b4d0c158-330c-4f44-99ec-ddf8f5a8ef41 def78d4aac442b986194f8599c175a04 { 'aliquot_tag': 'ALQ_a60202e2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02967.WGS.T C3L-02967 LUAD WGS tumor CPT0218490006 CPT0218490006.WholeGenome.RP-1303.bam 59685349666 BAM aligned CPTAC3 00173aa1-95fe-4baa-bc9b-7fa4f91a5c41 fd54f4e8502f29a033b8d3d91eb86f92 { 'aliquot_tag': 'ALQ_b696bce0', 'gdc_sample_type': 'Primary Tumor' } @@ -12714,12 +13538,12 @@ C3L-02968.miRNA-Seq.T C3L-02968 LSCC miRNA-Seq tumor CPT0196810006 190228_UNC32- C3L-02968.miRNA-Seq.T.hg38 C3L-02968 LSCC miRNA-Seq tumor CPT0196810006 04764cfc-654c-4d24-b176-b28898f2e3a7_mirnaseq_gdc_realn.bam 338669728 BAM harmonized CPTAC3 1269eb51-6dca-4f60-9059-abc4dd73020d 33ce6c0ccf39f746fad94e7e1ce39f23 { 'aliquot_tag': 'ALQ_4b736b77', 'gdc_sample_type': 'Primary Tumor' } C3L-02968.RNA-Seq.chimeric.A.hg38 C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 a7f02909-cfb7-4d53-9773-9d26ef365609.rna_seq.chimeric.gdc_realn.bam 280854105 BAM chimeric harmonized CPTAC3 9ec456cc-bed6-4f87-b2f9-be9861b722e4 bf78e1a11433107e2b5c91ba80f4522a { 'aliquot_tag': 'ALQ_cd311a7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02968.RNA-Seq.chimeric.T.hg38 C3L-02968 LSCC RNA-Seq tumor CPT0196810006 345a1c8a-8630-43fe-82a8-912ff12ee4f3.rna_seq.chimeric.gdc_realn.bam 136149334 BAM chimeric harmonized CPTAC3 9482471a-3346-4f21-8a69-ee5c467c5537 a4990d6210376b36f9060f9f7b78a100 { 'aliquot_tag': 'ALQ_4b736b77', 'gdc_sample_type': 'Primary Tumor' } -C3L-02968.RNA-Seq.genomic.A.hg38 C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 a7f02909-cfb7-4d53-9773-9d26ef365609.rna_seq.genomic.gdc_realn.bam 6420436507 BAM genomic harmonized CPTAC3 6660ead0-9796-43e1-a56b-4a7d2f59557c e3ec53f11738258d5451c34d20c5ed23 { 'aliquot_tag': 'ALQ_cd311a7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02968.RNA-Seq.genomic.T.hg38 C3L-02968 LSCC RNA-Seq tumor CPT0196810006 345a1c8a-8630-43fe-82a8-912ff12ee4f3.rna_seq.genomic.gdc_realn.bam 7924451798 BAM genomic harmonized CPTAC3 edf1b3ab-ac3c-4c7f-aa35-cb146d3b7382 cde5941ee945677a822c616eb8f78fdd { 'aliquot_tag': 'ALQ_4b736b77', 'gdc_sample_type': 'Primary Tumor' } -C3L-02968.RNA-Seq.R1_L005.A C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGATGT_S17_L005_R1_001.fastq.gz 2860490376 FASTQ R1_L005 unaligned CPTAC3 d0c31960-1ba0-4298-afba-1608f1298487 2839a9087d9752446a5fee4cdcec9523 { 'aliquot_tag': 'ALQ_cd311a7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02968.RNA-Seq.R1_L006.T C3L-02968 LSCC RNA-Seq tumor CPT0196810006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGAAA_S28_L006_R1_001.fastq.gz 3592707828 FASTQ R1_L006 unaligned CPTAC3 29d21104-d9a2-4a45-8b43-c10348d1cf81 9d122ae58ada7d8c3f39dd5a3471d7a2 { 'aliquot_tag': 'ALQ_4b736b77', 'gdc_sample_type': 'Primary Tumor' } -C3L-02968.RNA-Seq.R2_L005.A C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGATGT_S17_L005_R2_001.fastq.gz 3220097960 FASTQ R2_L005 unaligned CPTAC3 a7bfcb14-c8f7-45ea-9e19-e328231fdbd6 b342626a5b1b525ad9373b8068ed3e67 { 'aliquot_tag': 'ALQ_cd311a7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02968.RNA-Seq.R2_L006.T C3L-02968 LSCC RNA-Seq tumor CPT0196810006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGAAA_S28_L006_R2_001.fastq.gz 3696351903 FASTQ R2_L006 unaligned CPTAC3 86c676c8-2d55-4918-a124-7a26d394a401 827138cd7bd6448f1bef18cc790f5e0b { 'aliquot_tag': 'ALQ_4b736b77', 'gdc_sample_type': 'Primary Tumor' } +C3L-02968.RNA-Seq.genomic.A.hg38 C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 a7f02909-cfb7-4d53-9773-9d26ef365609.rna_seq.genomic.gdc_realn.bam 6420436507 BAM genomic harmonized CPTAC3 9d973214-1d07-4181-bd6f-8b2f7670e48c e3ec53f11738258d5451c34d20c5ed23 { 'aliquot_tag': 'ALQ_cd311a7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02968.RNA-Seq.genomic.T.hg38 C3L-02968 LSCC RNA-Seq tumor CPT0196810006 345a1c8a-8630-43fe-82a8-912ff12ee4f3.rna_seq.genomic.gdc_realn.bam 7924451798 BAM genomic harmonized CPTAC3 1da9890d-7079-4ed9-805e-0f3f5d717317 cde5941ee945677a822c616eb8f78fdd { 'aliquot_tag': 'ALQ_4b736b77', 'gdc_sample_type': 'Primary Tumor' } +C3L-02968.RNA-Seq.R1_L005.A C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGATGT_S17_L005_R1_001.fastq.gz 2860490376 FASTQ R1_L005 unaligned CPTAC3 d0c31960-1ba0-4298-afba-1608f1298487 2839a9087d9752446a5fee4cdcec9523 { 'aliquot_tag': 'ALQ_cd311a7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-02968.RNA-Seq.R1_L006.T C3L-02968 LSCC RNA-Seq tumor CPT0196810006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGAAA_S28_L006_R1_001.fastq.gz 3592707828 FASTQ R1_L006 unaligned CPTAC3 29d21104-d9a2-4a45-8b43-c10348d1cf81 9d122ae58ada7d8c3f39dd5a3471d7a2 { 'aliquot_tag': 'ALQ_4b736b77', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-02968.RNA-Seq.R2_L005.A C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 181207_UNC32-K00270_0136_AH2N7LBBXY_CGATGT_S17_L005_R2_001.fastq.gz 3220097960 FASTQ R2_L005 unaligned CPTAC3 a7bfcb14-c8f7-45ea-9e19-e328231fdbd6 b342626a5b1b525ad9373b8068ed3e67 { 'aliquot_tag': 'ALQ_cd311a7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-02968.RNA-Seq.R2_L006.T C3L-02968 LSCC RNA-Seq tumor CPT0196810006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTGAAA_S28_L006_R2_001.fastq.gz 3696351903 FASTQ R2_L006 unaligned CPTAC3 86c676c8-2d55-4918-a124-7a26d394a401 827138cd7bd6448f1bef18cc790f5e0b { 'aliquot_tag': 'ALQ_4b736b77', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-02968.RNA-Seq.transcriptome.A.hg38 C3L-02968 LSCC RNA-Seq tissue_normal CPT0196820006 a7f02909-cfb7-4d53-9773-9d26ef365609.rna_seq.transcriptome.gdc_realn.bam 7020119582 BAM transcriptome harmonized CPTAC3 00904565-9953-412f-9d55-4ff719afbc5b bd1af0fcc74a438e8ab5989378f20eda { 'aliquot_tag': 'ALQ_cd311a7', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02968.RNA-Seq.transcriptome.T.hg38 C3L-02968 LSCC RNA-Seq tumor CPT0196810006 345a1c8a-8630-43fe-82a8-912ff12ee4f3.rna_seq.transcriptome.gdc_realn.bam 10136678376 BAM transcriptome harmonized CPTAC3 161cc3fd-bc7a-49b4-9580-a4edef738fe8 509e90b20fa25e912d56415f73f479a6 { 'aliquot_tag': 'ALQ_4b736b77', 'gdc_sample_type': 'Primary Tumor' } C3L-02968.WGS.A C3L-02968 LSCC WGS tissue_normal CPT0196820009 CPT0196820009.WholeGenome.RP-1303.bam 54195414822 BAM aligned CPTAC3 69283f94-9de7-4889-a2c8-b6f001553061 2e1115ae92bfe9c1e313bcaff2e0ada3 { 'aliquot_tag': 'ALQ_9c6c0c36', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -12744,12 +13568,12 @@ C3L-02969.miRNA-Seq.T C3L-02969 LSCC miRNA-Seq tumor CPT0217420009 190206_UNC31- C3L-02969.miRNA-Seq.T.hg38 C3L-02969 LSCC miRNA-Seq tumor CPT0217420009 b5086f1b-67ac-47ec-8d66-ecfed8b01e75_mirnaseq_gdc_realn.bam 135245442 BAM harmonized CPTAC3 3d6adc9a-5a62-4fca-98b9-48af6cc4f809 a5590143bc9bc5a0e8051f53299da95d { 'aliquot_tag': 'ALQ_a7b1e089', 'gdc_sample_type': 'Primary Tumor' } C3L-02969.RNA-Seq.chimeric.A.hg38 C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 4a46538e-a31c-475b-95ec-10c3d56d06a3.rna_seq.chimeric.gdc_realn.bam 144928346 BAM chimeric harmonized CPTAC3 b8356575-d6ba-4507-bee6-6521039936f8 e0e64d51cbdbabc23006bb1b33ef201d { 'aliquot_tag': 'ALQ_d061d198', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02969.RNA-Seq.chimeric.T.hg38 C3L-02969 LSCC RNA-Seq tumor CPT0217420009 ac4cb418-c21e-48f3-9be5-c7be755c6869.rna_seq.chimeric.gdc_realn.bam 60883071 BAM chimeric harmonized CPTAC3 50e6668d-b4cd-4e91-874d-461bf8459cff 0d5d08a756bd638ff8a3d8a5491a2cb2 { 'aliquot_tag': 'ALQ_a7b1e089', 'gdc_sample_type': 'Primary Tumor' } -C3L-02969.RNA-Seq.genomic.A.hg38 C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 4a46538e-a31c-475b-95ec-10c3d56d06a3.rna_seq.genomic.gdc_realn.bam 9212612558 BAM genomic harmonized CPTAC3 2afbbf32-1ee1-413d-b0ce-946ce6306cc2 5ae4033f12e087554442511620f826d6 { 'aliquot_tag': 'ALQ_d061d198', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02969.RNA-Seq.genomic.T.hg38 C3L-02969 LSCC RNA-Seq tumor CPT0217420009 ac4cb418-c21e-48f3-9be5-c7be755c6869.rna_seq.genomic.gdc_realn.bam 9387583543 BAM genomic harmonized CPTAC3 2635b6c1-1774-4d68-a480-1d18ccf79e5d 8a213af4f9abacf736dde599b3e227be { 'aliquot_tag': 'ALQ_a7b1e089', 'gdc_sample_type': 'Primary Tumor' } -C3L-02969.RNA-Seq.R1_L002.A C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 4051135372 FASTQ R1_L002 unaligned CPTAC3 00c30ef1-0b13-45a4-bf18-0bd9fb05b1c1 53d4ff0e671a08ffec99c94da587321a { 'aliquot_tag': 'ALQ_d061d198', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02969.RNA-Seq.R1_L007.T C3L-02969 LSCC RNA-Seq tumor CPT0217420009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L007_R1_001.fastq.gz 4058864935 FASTQ R1_L007 unaligned CPTAC3 c5db9c66-41b1-485f-a6f3-055e5d3f0d2f e1fd6f45e9fd5a0ee5df2839daab5338 { 'aliquot_tag': 'ALQ_a7b1e089', 'gdc_sample_type': 'Primary Tumor' } -C3L-02969.RNA-Seq.R2_L002.A C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 4520283548 FASTQ R2_L002 unaligned CPTAC3 73df68fc-ee4c-422c-9536-4a2ef378631d c097a31fb31e456a0b4dfb7cd67676df { 'aliquot_tag': 'ALQ_d061d198', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-02969.RNA-Seq.R2_L007.T C3L-02969 LSCC RNA-Seq tumor CPT0217420009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L007_R2_001.fastq.gz 4540668482 FASTQ R2_L007 unaligned CPTAC3 a67dc932-9ad9-4edf-a590-9508b9a3c388 64e73d4ac6b809e366219994e685053f { 'aliquot_tag': 'ALQ_a7b1e089', 'gdc_sample_type': 'Primary Tumor' } +C3L-02969.RNA-Seq.genomic.A.hg38 C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 4a46538e-a31c-475b-95ec-10c3d56d06a3.rna_seq.genomic.gdc_realn.bam 9212612558 BAM genomic harmonized CPTAC3 d3f0211c-afd9-446c-9659-c3fe869d027e 5ae4033f12e087554442511620f826d6 { 'aliquot_tag': 'ALQ_d061d198', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-02969.RNA-Seq.genomic.T.hg38 C3L-02969 LSCC RNA-Seq tumor CPT0217420009 ac4cb418-c21e-48f3-9be5-c7be755c6869.rna_seq.genomic.gdc_realn.bam 9387583543 BAM genomic harmonized CPTAC3 7ba74335-00d7-4d3d-bfb5-a54c15033e36 8a213af4f9abacf736dde599b3e227be { 'aliquot_tag': 'ALQ_a7b1e089', 'gdc_sample_type': 'Primary Tumor' } +C3L-02969.RNA-Seq.R1_L002.A C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 4051135372 FASTQ R1_L002 unaligned CPTAC3 00c30ef1-0b13-45a4-bf18-0bd9fb05b1c1 53d4ff0e671a08ffec99c94da587321a { 'aliquot_tag': 'ALQ_d061d198', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-02969.RNA-Seq.R1_L007.T C3L-02969 LSCC RNA-Seq tumor CPT0217420009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L007_R1_001.fastq.gz 4058864935 FASTQ R1_L007 unaligned CPTAC3 c5db9c66-41b1-485f-a6f3-055e5d3f0d2f e1fd6f45e9fd5a0ee5df2839daab5338 { 'aliquot_tag': 'ALQ_a7b1e089', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-02969.RNA-Seq.R2_L002.A C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 4520283548 FASTQ R2_L002 unaligned CPTAC3 73df68fc-ee4c-422c-9536-4a2ef378631d c097a31fb31e456a0b4dfb7cd67676df { 'aliquot_tag': 'ALQ_d061d198', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-02969.RNA-Seq.R2_L007.T C3L-02969 LSCC RNA-Seq tumor CPT0217420009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGTACG_S6_L007_R2_001.fastq.gz 4540668482 FASTQ R2_L007 unaligned CPTAC3 a67dc932-9ad9-4edf-a590-9508b9a3c388 64e73d4ac6b809e366219994e685053f { 'aliquot_tag': 'ALQ_a7b1e089', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-02969.RNA-Seq.transcriptome.A.hg38 C3L-02969 LSCC RNA-Seq tissue_normal CPT0217490009 4a46538e-a31c-475b-95ec-10c3d56d06a3.rna_seq.transcriptome.gdc_realn.bam 9508472661 BAM transcriptome harmonized CPTAC3 d5621990-91e7-4378-a5c0-62776b45c430 2276699e73dfa31e17cba691158cc21b { 'aliquot_tag': 'ALQ_d061d198', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-02969.RNA-Seq.transcriptome.T.hg38 C3L-02969 LSCC RNA-Seq tumor CPT0217420009 ac4cb418-c21e-48f3-9be5-c7be755c6869.rna_seq.transcriptome.gdc_realn.bam 9823319591 BAM transcriptome harmonized CPTAC3 9351498e-e560-4984-8c04-7dfac0afdfc3 47366f4f2541f0c4ce772c3ee764f438 { 'aliquot_tag': 'ALQ_a7b1e089', 'gdc_sample_type': 'Primary Tumor' } C3L-02969.WGS.A C3L-02969 LSCC WGS tissue_normal CPT0217490006 CPT0217490006.WholeGenome.RP-1303.bam 52642053650 BAM aligned CPTAC3 b1ad165f-e9af-455e-a3fa-ebcfd2da093f 8899e71d1a2c63c402d13f9c7b4d7e44 { 'aliquot_tag': 'ALQ_40decc09', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -12770,8 +13594,8 @@ C3L-02970.miRNA-Seq.T C3L-02970 GBM miRNA-Seq tumor CPT0217880013 190206_UNC31-K C3L-02970.miRNA-Seq.T.hg38 C3L-02970 GBM miRNA-Seq tumor CPT0217880013 1e446c25-0f79-4ade-b721-5e713fd0a9f5_mirnaseq_gdc_realn.bam 221070281 BAM harmonized CPTAC3 81d9d599-2f7e-4623-883c-16d56cce8be1 fbaee462724e9db811c25c0522b582b3 { 'aliquot_tag': 'ALQ_630de00c', 'gdc_sample_type': 'Primary Tumor' } C3L-02970.RNA-Seq.chimeric.T.hg38 C3L-02970 GBM RNA-Seq tumor CPT0217880013 27ad3b30-97ff-44a4-89f7-5233a3c3596e.rna_seq.chimeric.gdc_realn.bam 73578571 BAM chimeric harmonized CPTAC3 1c7f92a1-a912-482e-96fa-044ba3e74475 2df553e2b7d47ee41d7b6ef0abc74d3b { 'aliquot_tag': 'ALQ_630de00c', 'gdc_sample_type': 'Primary Tumor' } C3L-02970.RNA-Seq.genomic.T.hg38 C3L-02970 GBM RNA-Seq tumor CPT0217880013 27ad3b30-97ff-44a4-89f7-5233a3c3596e.rna_seq.genomic.gdc_realn.bam 8057518597 BAM genomic harmonized CPTAC3 766c290c-cd5b-4fbd-a320-5c87c623d74a 7ca553decd22b3bab3763abfc7940e6e { 'aliquot_tag': 'ALQ_630de00c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02970.RNA-Seq.R1_L001.T C3L-02970 GBM RNA-Seq tumor CPT0217880013 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3532091453 FASTQ R1_L001 unaligned CPTAC3 0575a3ab-ff1b-430d-b198-d5fcbec93b3d 63b06b37b50aea2e9fc36960c9b74cf2 { 'aliquot_tag': 'ALQ_630de00c', 'gdc_sample_type': 'Primary Tumor' } -C3L-02970.RNA-Seq.R2_L001.T C3L-02970 GBM RNA-Seq tumor CPT0217880013 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L001_R2_001.fastq.gz 4011276075 FASTQ R2_L001 unaligned CPTAC3 f099332e-d453-47ee-a342-6e94fde94579 beff93636de8ec37e944a0360c0e81db { 'aliquot_tag': 'ALQ_630de00c', 'gdc_sample_type': 'Primary Tumor' } +C3L-02970.RNA-Seq.R1_L001.T C3L-02970 GBM RNA-Seq tumor CPT0217880013 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3532091453 FASTQ R1_L001 unaligned CPTAC3 0575a3ab-ff1b-430d-b198-d5fcbec93b3d 63b06b37b50aea2e9fc36960c9b74cf2 { 'aliquot_tag': 'ALQ_630de00c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-02970.RNA-Seq.R2_L001.T C3L-02970 GBM RNA-Seq tumor CPT0217880013 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L001_R2_001.fastq.gz 4011276075 FASTQ R2_L001 unaligned CPTAC3 f099332e-d453-47ee-a342-6e94fde94579 beff93636de8ec37e944a0360c0e81db { 'aliquot_tag': 'ALQ_630de00c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-02970.RNA-Seq.transcriptome.T.hg38 C3L-02970 GBM RNA-Seq tumor CPT0217880013 27ad3b30-97ff-44a4-89f7-5233a3c3596e.rna_seq.transcriptome.gdc_realn.bam 8446548198 BAM transcriptome harmonized CPTAC3 5a2df5d1-fd95-4a86-819d-6f82e548c4dc 6648da50cd6d59e6f8956a40440bbce4 { 'aliquot_tag': 'ALQ_630de00c', 'gdc_sample_type': 'Primary Tumor' } C3L-02970.WGS.N C3L-02970 GBM WGS blood_normal CPT0219880002 CPT0219880002.WholeGenome.RP-1303.bam 60078628961 BAM aligned CPTAC3 6b88503d-132d-4d1e-bc97-11b3050a469c 1768d604f78ea481f7c59f1579f8b9e4 { 'aliquot_tag': 'ALQ_5d2e9a86', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02970.WGS.N.hg38 C3L-02970 GBM WGS blood_normal CPT0219880002 61b7727d-fa5b-4787-8df0-c1c0e0662f06_wgs_gdc_realn.bam 88065989978 BAM harmonized CPTAC3 6e191426-5a5f-4ae1-8f35-4abfe09561ca 3acbe75d67bdfda7138c1df1958fcf9e { 'aliquot_tag': 'ALQ_5d2e9a86', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12787,8 +13611,8 @@ C3L-02984.miRNA-Seq.T C3L-02984 GBM miRNA-Seq tumor CPT0190240010 181219_UNC31-K C3L-02984.miRNA-Seq.T.hg38 C3L-02984 GBM miRNA-Seq tumor CPT0190240010 3be475db-a5c2-47d9-ab85-ce875a57dae2_mirnaseq_gdc_realn.bam 345560822 BAM harmonized CPTAC3 15e8ebf9-accb-4845-bd3a-f7ea0827fe3d a2978006bf8c8d3ab017cde74b0935a4 { 'aliquot_tag': 'ALQ_b1a0662f', 'gdc_sample_type': 'Primary Tumor' } C3L-02984.RNA-Seq.chimeric.T.hg38 C3L-02984 GBM RNA-Seq tumor CPT0190240010 1bc318cd-a7a7-4356-915c-29a97a234013.rna_seq.chimeric.gdc_realn.bam 178249678 BAM chimeric harmonized CPTAC3 9fde700d-3863-4ace-9848-c12e99b3c3bb 4b6e82263753ce427c4c660a033a8e21 { 'aliquot_tag': 'ALQ_b1a0662f', 'gdc_sample_type': 'Primary Tumor' } C3L-02984.RNA-Seq.genomic.T.hg38 C3L-02984 GBM RNA-Seq tumor CPT0190240010 1bc318cd-a7a7-4356-915c-29a97a234013.rna_seq.genomic.gdc_realn.bam 6352093350 BAM genomic harmonized CPTAC3 f1205de9-684e-4a6c-b7ba-5c53fe3a90c4 890c6756ae3e775c00d6a8cfa90fc4dc { 'aliquot_tag': 'ALQ_b1a0662f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02984.RNA-Seq.R1_L002.T C3L-02984 GBM RNA-Seq tumor CPT0190240010 181207_UNC32-K00270_0136_AH2N7LBBXY_CTTGTA_S7_L002_R1_001.fastq.gz 2810736021 FASTQ R1_L002 unaligned CPTAC3 76f376b0-2060-4210-91a5-7a9c455f5a06 b941036a99280f8d23b4b30feea436c6 { 'aliquot_tag': 'ALQ_b1a0662f', 'gdc_sample_type': 'Primary Tumor' } -C3L-02984.RNA-Seq.R2_L002.T C3L-02984 GBM RNA-Seq tumor CPT0190240010 181207_UNC32-K00270_0136_AH2N7LBBXY_CTTGTA_S7_L002_R2_001.fastq.gz 2953074405 FASTQ R2_L002 unaligned CPTAC3 11d1d3d7-9d95-4062-8f5f-87972e664b99 39d560fe0a11144f75ee060c106e3ba0 { 'aliquot_tag': 'ALQ_b1a0662f', 'gdc_sample_type': 'Primary Tumor' } +C3L-02984.RNA-Seq.R1_L002.T C3L-02984 GBM RNA-Seq tumor CPT0190240010 181207_UNC32-K00270_0136_AH2N7LBBXY_CTTGTA_S7_L002_R1_001.fastq.gz 2810736021 FASTQ R1_L002 unaligned CPTAC3 76f376b0-2060-4210-91a5-7a9c455f5a06 b941036a99280f8d23b4b30feea436c6 { 'aliquot_tag': 'ALQ_b1a0662f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-02984.RNA-Seq.R2_L002.T C3L-02984 GBM RNA-Seq tumor CPT0190240010 181207_UNC32-K00270_0136_AH2N7LBBXY_CTTGTA_S7_L002_R2_001.fastq.gz 2953074405 FASTQ R2_L002 unaligned CPTAC3 11d1d3d7-9d95-4062-8f5f-87972e664b99 39d560fe0a11144f75ee060c106e3ba0 { 'aliquot_tag': 'ALQ_b1a0662f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-02984.RNA-Seq.transcriptome.T.hg38 C3L-02984 GBM RNA-Seq tumor CPT0190240010 1bc318cd-a7a7-4356-915c-29a97a234013.rna_seq.transcriptome.gdc_realn.bam 5552294237 BAM transcriptome harmonized CPTAC3 ca4a895d-80af-4af0-a05c-ddbee224cf63 c33cc70e0efa28a2cc376d27fe767cb5 { 'aliquot_tag': 'ALQ_b1a0662f', 'gdc_sample_type': 'Primary Tumor' } C3L-02984.WGS.N C3L-02984 GBM WGS blood_normal CPT0191140002 CPT0191140002.WholeGenome.RP-1303.bam 54115104663 BAM aligned CPTAC3 65b9254f-e641-45c7-8f6d-2efc182f471f 07aa0bb822e9f3191a089c24fa14a52c { 'aliquot_tag': 'ALQ_66564f58', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02984.WGS.N.hg38 C3L-02984 GBM WGS blood_normal CPT0191140002 e5ddf63e-02bd-4bdc-b9ce-a6a7f6a7f918_wgs_gdc_realn.bam 79654917121 BAM harmonized CPTAC3 5818d333-beab-43be-82c1-0dd0d4b9dc2b 8ffa6279c43d0e1097d53e32ec4d3b57 { 'aliquot_tag': 'ALQ_66564f58', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12802,13 +13626,16 @@ C3L-02990.MethArray.Green.T C3L-02990 UCEC Methylation Array tumor CPT0238260006 C3L-02990.MethArray.Red.T C3L-02990 UCEC Methylation Array tumor CPT0238260006 203273630258_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 9f7c588f-20b8-446a-b220-4ed347dd1c2f b026d0228b6d00416bb78870e89a12c9 { 'aliquot_tag': 'ALQ_a0bacf51', 'gdc_sample_type': 'Primary Tumor' } C3L-02990.miRNA-Seq.T C3L-02990 UCEC miRNA-Seq tumor CPT0238260009 190508_UNC31-K00269_0215_BH7FYKBBXY_GGTAGC_S24_L004_R1_001.unaln.bam 145691431 BAM unaligned CPTAC3 86a761ee-1d45-4dcb-8d2c-eb6cb8625299 0c7c57832e2b3e990472bc3cebfd76d8 { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor' } C3L-02990.miRNA-Seq.T.hg38 C3L-02990 UCEC miRNA-Seq tumor CPT0238260009 e5340ca0-0f97-40b8-ad62-ce5d415b6d00_mirnaseq_gdc_realn.bam 164510208 BAM harmonized CPTAC3 bccd66ec-6551-4386-9acb-9ad00268e663 958db53efe6512bf73560908b7428e80 { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02990.RNA-Seq.chimeric.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 ac0a3c82-9c42-431a-b777-17d8f5cd9186.rna_seq.chimeric.gdc_realn.bam 34212483 BAM chimeric harmonized CPTAC3 d841b7ce-4282-4393-bd6d-14656c20014a 2f91c1efd8d0c6204c413411c31e51ba { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02990.RNA-Seq.genomic.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 ac0a3c82-9c42-431a-b777-17d8f5cd9186.rna_seq.genomic.gdc_realn.bam 8686023324 BAM genomic harmonized CPTAC3 20b925f5-f1f2-4d07-9251-3f738714f60c e13018141cc0d2db2db5f2e8c3aaf533 { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02990.RNA-Seq.R1_L005.T C3L-02990 UCEC RNA-Seq tumor CPT0238260009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTCTACAC-GCCAAGGT_S20_L005_R1_001.fastq.gz 4088077320 FASTQ R1_L005 unaligned CPTAC3 33933da7-f679-46b2-9cb5-c536aeb6055b 7ec5ec23e5456dd023e88fc2d7764c9e { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02990.RNA-Seq.R1_.T C3L-02990 UCEC RNA-Seq tumor CPT0238340001 20210729_P3_A11_WB7988-Plate3_S11_R1_001.fastq.gz 11919349405 FASTQ R1_ unaligned CPTAC3 bce9e6d3-d5d8-4c66-9e6b-c2878e51ac9e c0f19fae6b6616f31afd905df9d52602 { 'aliquot_tag': 'ALQ_8f42da37', 'gdc_sample_type': 'Primary Tumor' } -C3L-02990.RNA-Seq.R2_L005.T C3L-02990 UCEC RNA-Seq tumor CPT0238260009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTCTACAC-GCCAAGGT_S20_L005_R2_001.fastq.gz 4722129857 FASTQ R2_L005 unaligned CPTAC3 b52d46e7-1741-4536-8105-b878ad74b379 a23f072722a545e7261170af2f130634 { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor' } -C3L-02990.RNA-Seq.R2_.T C3L-02990 UCEC RNA-Seq tumor CPT0238340001 20210729_P3_A11_WB7988-Plate3_S11_R2_001.fastq.gz 12243951613 FASTQ R2_ unaligned CPTAC3 44c9ddbe-7efd-4020-8dd3-ee0c609c99dd 215ed45b1879db0dc792f13ae9c0152e { 'aliquot_tag': 'ALQ_8f42da37', 'gdc_sample_type': 'Primary Tumor' } -C3L-02990.RNA-Seq.transcriptome.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 ac0a3c82-9c42-431a-b777-17d8f5cd9186.rna_seq.transcriptome.gdc_realn.bam 9082724062 BAM transcriptome harmonized CPTAC3 5c1ae2ea-636e-4bf1-9b5f-cae786e1e7e2 fd6a3783ceac26e7dc2264b723b4675a { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02990.RNA-Seq.chimeric.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 1273c679-5fe8-4187-988f-5fe07d5ff41d.rna_seq.chimeric.gdc_realn.bam 34194623 BAM chimeric harmonized CPTAC3 ce5cf0c8-1d3a-432f-b24e-54119e663cd6 cb09a8f2f70dcfe968216b1b8ebba8f9 { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02990.RNA-Seq.chimeric.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238340001 0ea57941-e950-448b-b546-cbdd460f74f2.rna_seq.chimeric.gdc_realn.bam 408048616 BAM chimeric harmonized CPTAC3 82615f24-bfd6-4dff-a853-0328841aaad8 583dd8c3225541c4c065e34b382b0b26 { 'aliquot_tag': 'ALQ_8f42da37', 'gdc_sample_type': 'Primary Tumor' } +C3L-02990.RNA-Seq.genomic.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 1273c679-5fe8-4187-988f-5fe07d5ff41d.rna_seq.genomic.gdc_realn.bam 8687125108 BAM genomic harmonized CPTAC3 4920b979-6979-42ee-b4fd-c7db4090defd 954f3408da8b16270c57b148cb98ef34 { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02990.RNA-Seq.genomic.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238340001 0ea57941-e950-448b-b546-cbdd460f74f2.rna_seq.genomic.gdc_realn.bam 18356064273 BAM genomic harmonized CPTAC3 beb6241f-2d81-4e1d-9197-22b9dee75fc2 a92b8cc18f9a3554dcc73478b62a5a6d { 'aliquot_tag': 'ALQ_8f42da37', 'gdc_sample_type': 'Primary Tumor' } +C3L-02990.RNA-Seq.R1_L005.T C3L-02990 UCEC RNA-Seq tumor CPT0238260009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTCTACAC-GCCAAGGT_S20_L005_R1_001.fastq.gz 4088077320 FASTQ R1_L005 unaligned CPTAC3 33933da7-f679-46b2-9cb5-c536aeb6055b 7ec5ec23e5456dd023e88fc2d7764c9e { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-02990.RNA-Seq.R2_L005.T C3L-02990 UCEC RNA-Seq tumor CPT0238260009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTCTACAC-GCCAAGGT_S20_L005_R2_001.fastq.gz 4722129857 FASTQ R2_L005 unaligned CPTAC3 b52d46e7-1741-4536-8105-b878ad74b379 a23f072722a545e7261170af2f130634 { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-02990.RNA-Seq.T C3L-02990 UCEC RNA-Seq tumor CPT0238340001 20210729_P3_A11_WB7988-Plate3_S11_R1_001.fastq.gz 11919349405 FASTQ unaligned CPTAC3 bce9e6d3-d5d8-4c66-9e6b-c2878e51ac9e c0f19fae6b6616f31afd905df9d52602 +C3L-02990.RNA-Seq.T C3L-02990 UCEC RNA-Seq tumor CPT0238340001 20210729_P3_A11_WB7988-Plate3_S11_R2_001.fastq.gz 12243951613 FASTQ unaligned CPTAC3 44c9ddbe-7efd-4020-8dd3-ee0c609c99dd 215ed45b1879db0dc792f13ae9c0152e +C3L-02990.RNA-Seq.transcriptome.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238260009 1273c679-5fe8-4187-988f-5fe07d5ff41d.rna_seq.transcriptome.gdc_realn.bam 10362469591 BAM transcriptome harmonized CPTAC3 cc7771d8-4d01-42f6-8d37-f6b1148bfd4f d7df1f1f223d1b8631939e4f6108da3e { 'aliquot_tag': 'ALQ_3005d2c0', 'gdc_sample_type': 'Primary Tumor' } +C3L-02990.RNA-Seq.transcriptome.T.hg38 C3L-02990 UCEC RNA-Seq tumor CPT0238340001 0ea57941-e950-448b-b546-cbdd460f74f2.rna_seq.transcriptome.gdc_realn.bam 9583353435 BAM transcriptome harmonized CPTAC3 49bb70bc-786a-4360-ab54-97b68189d098 4a9082cf554afba5a30517445b478158 { 'aliquot_tag': 'ALQ_8f42da37', 'gdc_sample_type': 'Primary Tumor' } C3L-02990.WGS.N C3L-02990 UCEC WGS blood_normal CPT0238180002 CPT0238180002.WholeGenome.RP-1303.bam 67506416879 BAM aligned CPTAC3 fca77088-475d-4166-836d-69cc432da2e3 017dd565fd94c8f31183181aae5556ab { 'aliquot_tag': 'ALQ_9e73c787', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02990.WGS.N.hg38 C3L-02990 UCEC WGS blood_normal CPT0238180002 1665932e-a10d-4127-b849-6bebfa2f3730_wgs_gdc_realn.bam 97448453229 BAM harmonized CPTAC3 ebfa0769-a427-48d7-82a1-02bcba2c7f14 b17cf3fb25f80e612283c861481923a1 { 'aliquot_tag': 'ALQ_9e73c787', 'gdc_sample_type': 'Blood Derived Normal' } C3L-02990.WGS.T C3L-02990 UCEC WGS tumor CPT0238260006 CPT0238260006.WholeGenome.RP-1303.bam 78684046559 BAM aligned CPTAC3 7a5b7822-51a8-4b3b-8132-32fe04142650 2f4b490f28fea88ea1f733f79b6b6bb0 { 'aliquot_tag': 'ALQ_a0bacf51', 'gdc_sample_type': 'Primary Tumor' } @@ -12825,12 +13652,12 @@ C3L-03123.miRNA-Seq.T C3L-03123 PDA miRNA-Seq tumor CPT0166760010 190712_UNC32-K C3L-03123.miRNA-Seq.T.hg38 C3L-03123 PDA miRNA-Seq tumor CPT0166760010 4410d350-40fb-42b8-ad2f-53d72fd5223c_mirnaseq_gdc_realn.bam 219357750 BAM harmonized CPTAC3 6b590371-378b-43ee-8338-81ec7bd2ffa2 0354315578b9e07584685be6b3d92ed9 { 'aliquot_tag': 'ALQ_215d836a', 'gdc_sample_type': 'Primary Tumor' } C3L-03123.RNA-Seq.chimeric.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 76031eae-6009-4c28-ab35-5696948c3e3b.rna_seq.chimeric.gdc_realn.bam 25875198 BAM chimeric harmonized CPTAC3 a0a14f6e-20a3-4938-bd57-2a2445c5462c 2d7e3d2660da9a72add179c2c2f96bf9 { 'aliquot_tag': 'ALQ_191299e9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03123.RNA-Seq.chimeric.T.hg38 C3L-03123 PDA RNA-Seq tumor CPT0166760010 052c916b-4b27-4b07-95a4-b9196f95a960.rna_seq.chimeric.gdc_realn.bam 124854557 BAM chimeric harmonized CPTAC3 207e9b7a-a4a8-46a5-91e5-68a018cede53 513f096d25b208bb6741794e626068aa { 'aliquot_tag': 'ALQ_215d836a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03123.RNA-Seq.genomic.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 76031eae-6009-4c28-ab35-5696948c3e3b.rna_seq.genomic.gdc_realn.bam 8255377556 BAM genomic harmonized CPTAC3 851f584c-1b07-4f1c-9d9d-a4aa51a5d5b7 267116a7ad1a855f55e8b15bff27b5d9 { 'aliquot_tag': 'ALQ_191299e9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03123.RNA-Seq.genomic.T.hg38 C3L-03123 PDA RNA-Seq tumor CPT0166760010 052c916b-4b27-4b07-95a4-b9196f95a960.rna_seq.genomic.gdc_realn.bam 8265667683 BAM genomic harmonized CPTAC3 532f76a2-a97a-474b-8274-0616d9744b24 89f7ffb136d3d5e137e376fa9044e6f4 { 'aliquot_tag': 'ALQ_215d836a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03123.RNA-Seq.R1_L005.T C3L-03123 PDA RNA-Seq tumor CPT0166760010 190614_UNC32-K00270_0182_BH7777BBXY_AATGCCTC-TCGATCCA_S19_L005_R1_001.fastq.gz 3169058428 FASTQ R1_L005 unaligned CPTAC3 e2d0fdac-4a37-4269-acc7-cfc3dacc04e4 40bdd71192ab769b0844766879f01241 { 'aliquot_tag': 'ALQ_215d836a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03123.RNA-Seq.R1_L007.A C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 190702_UNC32-K00270_0188_BH7CLJBBXY_GGTACCTT-AAGACGTC_S26_L007_R1_001.fastq.gz 3489139847 FASTQ R1_L007 unaligned CPTAC3 b1bc1b4d-602d-4d25-a55e-d6e84c43e251 f238651b2a86d53d5ee470c968856179 { 'aliquot_tag': 'ALQ_191299e9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03123.RNA-Seq.R2_L005.T C3L-03123 PDA RNA-Seq tumor CPT0166760010 190614_UNC32-K00270_0182_BH7777BBXY_AATGCCTC-TCGATCCA_S19_L005_R2_001.fastq.gz 3488356745 FASTQ R2_L005 unaligned CPTAC3 3abb4c46-b45d-47f7-96db-3e8dd86eb0b7 5579ae19030372b0758a63c83d9180cd { 'aliquot_tag': 'ALQ_215d836a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03123.RNA-Seq.R2_L007.A C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 190702_UNC32-K00270_0188_BH7CLJBBXY_GGTACCTT-AAGACGTC_S26_L007_R2_001.fastq.gz 4077257321 FASTQ R2_L007 unaligned CPTAC3 c802bd36-e58d-44a7-b8d6-06e40a797dc9 d907b923940c0963d005db1a0b7ef892 { 'aliquot_tag': 'ALQ_191299e9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03123.RNA-Seq.genomic.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 76031eae-6009-4c28-ab35-5696948c3e3b.rna_seq.genomic.gdc_realn.bam 8255377556 BAM genomic harmonized CPTAC3 a25acbb9-b087-4b7c-bc24-9ecbc2b86ff7 267116a7ad1a855f55e8b15bff27b5d9 { 'aliquot_tag': 'ALQ_191299e9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03123.RNA-Seq.genomic.T.hg38 C3L-03123 PDA RNA-Seq tumor CPT0166760010 052c916b-4b27-4b07-95a4-b9196f95a960.rna_seq.genomic.gdc_realn.bam 8265667683 BAM genomic harmonized CPTAC3 eb041726-4e5c-4174-9fe9-1afeba1af3f2 89f7ffb136d3d5e137e376fa9044e6f4 { 'aliquot_tag': 'ALQ_215d836a', 'gdc_sample_type': 'Primary Tumor' } +C3L-03123.RNA-Seq.R1_L005.T C3L-03123 PDA RNA-Seq tumor CPT0166760010 190614_UNC32-K00270_0182_BH7777BBXY_AATGCCTC-TCGATCCA_S19_L005_R1_001.fastq.gz 3169058428 FASTQ R1_L005 unaligned CPTAC3 e2d0fdac-4a37-4269-acc7-cfc3dacc04e4 40bdd71192ab769b0844766879f01241 { 'aliquot_tag': 'ALQ_215d836a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-03123.RNA-Seq.R1_L007.A C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 190702_UNC32-K00270_0188_BH7CLJBBXY_GGTACCTT-AAGACGTC_S26_L007_R1_001.fastq.gz 3489139847 FASTQ R1_L007 unaligned CPTAC3 b1bc1b4d-602d-4d25-a55e-d6e84c43e251 f238651b2a86d53d5ee470c968856179 { 'aliquot_tag': 'ALQ_191299e9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-03123.RNA-Seq.R2_L005.T C3L-03123 PDA RNA-Seq tumor CPT0166760010 190614_UNC32-K00270_0182_BH7777BBXY_AATGCCTC-TCGATCCA_S19_L005_R2_001.fastq.gz 3488356745 FASTQ R2_L005 unaligned CPTAC3 3abb4c46-b45d-47f7-96db-3e8dd86eb0b7 5579ae19030372b0758a63c83d9180cd { 'aliquot_tag': 'ALQ_215d836a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-03123.RNA-Seq.R2_L007.A C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 190702_UNC32-K00270_0188_BH7CLJBBXY_GGTACCTT-AAGACGTC_S26_L007_R2_001.fastq.gz 4077257321 FASTQ R2_L007 unaligned CPTAC3 c802bd36-e58d-44a7-b8d6-06e40a797dc9 d907b923940c0963d005db1a0b7ef892 { 'aliquot_tag': 'ALQ_191299e9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-03123.RNA-Seq.transcriptome.A.hg38 C3L-03123 PDA RNA-Seq tissue_normal CPT0166780007 76031eae-6009-4c28-ab35-5696948c3e3b.rna_seq.transcriptome.gdc_realn.bam 9965229210 BAM transcriptome harmonized CPTAC3 29ae09ac-afd3-4e58-8068-438aa475eb96 3910764d667dd53513d0e5f4445c12f5 { 'aliquot_tag': 'ALQ_191299e9', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03123.RNA-Seq.transcriptome.T.hg38 C3L-03123 PDA RNA-Seq tumor CPT0166760010 052c916b-4b27-4b07-95a4-b9196f95a960.rna_seq.transcriptome.gdc_realn.bam 7863915235 BAM transcriptome harmonized CPTAC3 699e0fc0-a9db-4675-9c4b-da51757faefd b2d602acd9b82842e6486fa73cb01a7d { 'aliquot_tag': 'ALQ_215d836a', 'gdc_sample_type': 'Primary Tumor' } C3L-03123.Targeted.T C3L-03123 PDA Targeted Sequencing tumor CPT0166760007 CPT0166760007.CustomSelection.RP-1303.PDO-18786.bam 4538514126 BAM aligned CPTAC3 dd1c2d44-ecce-4daa-af99-0361d9d16cee 6ef8fa87210db5a9e2f04d7da234c8e2 { 'aliquot_tag': 'ALQ_a6222788', 'gdc_sample_type': 'Primary Tumor' } @@ -12847,11 +13674,11 @@ C3L-03126.MethArray.Green.T C3L-03126 PDA Methylation Array tumor CPT0166850009 C3L-03126.MethArray.Red.T C3L-03126 PDA Methylation Array tumor CPT0166850009 203561450103_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 d55f612f-37ea-43c6-8879-1b01321c0c72 daa3387bc309f2a6c53c0f7b41b56270 { 'aliquot_tag': 'ALQ_f76cc28a', 'gdc_sample_type': 'Primary Tumor' } C3L-03126.miRNA-Seq.T C3L-03126 PDA miRNA-Seq tumor CPT0166850012 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGTCA_S38_L005_R1_001.unaln.bam 185470771 BAM unaligned CPTAC3 61dfad13-1ec5-433e-8599-9023ad1c02b4 58c6f45eb9c93b420fed40e20fe9019e { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor' } C3L-03126.miRNA-Seq.T.hg38 C3L-03126 PDA miRNA-Seq tumor CPT0166850012 1b9d03e5-035b-4d95-ac1d-5407d17fe37e_mirnaseq_gdc_realn.bam 212713772 BAM harmonized CPTAC3 b189cdf0-8c2c-4b24-b939-40c47334d23a f9c0b449d6fdf39d482fc3ccc1a19657 { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor' } -C3L-03126.RNA-Seq.chimeric.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 765b502f-4747-453b-8af4-d4ad64899e6b.rna_seq.chimeric.gdc_realn.bam 30618873 BAM chimeric harmonized CPTAC3 2d2b79c6-cf9b-452c-ae01-8abd9ea795ef 167118bc3173f7cde3c3891f2a6a2bae { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor' } -C3L-03126.RNA-Seq.genomic.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 765b502f-4747-453b-8af4-d4ad64899e6b.rna_seq.genomic.gdc_realn.bam 7775653110 BAM genomic harmonized CPTAC3 bd847e02-6b22-4564-afe6-7ab4f4a2bc0a bbf0d7b5acd77fbd151ef2d431ad3419 { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor' } -C3L-03126.RNA-Seq.R1_L006.T C3L-03126 PDA RNA-Seq tumor CPT0166850012 190621_UNC32-K00270_0185_BH7G72BBXY_TTGCCTAG-ACCACTTA_S24_L006_R1_001.fastq.gz 3643177624 FASTQ R1_L006 unaligned CPTAC3 853bc57c-a14b-4bdd-afa6-7f050d1a37d5 385e59afd084210c33dd2fa146f7c198 { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor' } -C3L-03126.RNA-Seq.R2_L006.T C3L-03126 PDA RNA-Seq tumor CPT0166850012 190621_UNC32-K00270_0185_BH7G72BBXY_TTGCCTAG-ACCACTTA_S24_L006_R2_001.fastq.gz 3944882637 FASTQ R2_L006 unaligned CPTAC3 0edf61ba-566a-4377-899e-8721ecfc3c42 d14c036cbec363bf3044e80495f8c119 { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor' } -C3L-03126.RNA-Seq.transcriptome.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 765b502f-4747-453b-8af4-d4ad64899e6b.rna_seq.transcriptome.gdc_realn.bam 8709262592 BAM transcriptome harmonized CPTAC3 773d97ce-6a99-4ec6-be84-7a0c272ae2b7 80de8d66b4302941aeb10a261b6394e8 { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor' } +C3L-03126.RNA-Seq.chimeric.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 6d48a342-e610-484b-b518-586d1ff12f30.rna_seq.chimeric.gdc_realn.bam 30600539 BAM chimeric harmonized CPTAC3 50e5c2f0-73e4-4c98-8b6b-ee858ede0531 f6a022a085c52237a4dcbe62db27054a { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor' } +C3L-03126.RNA-Seq.genomic.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 6d48a342-e610-484b-b518-586d1ff12f30.rna_seq.genomic.gdc_realn.bam 7776695946 BAM genomic harmonized CPTAC3 6e77cf3d-a756-4c61-8449-b8af173324f0 bcfdb290a97ee5b10f46b36d35ee2ea9 { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor' } +C3L-03126.RNA-Seq.R1_L006.T C3L-03126 PDA RNA-Seq tumor CPT0166850012 190621_UNC32-K00270_0185_BH7G72BBXY_TTGCCTAG-ACCACTTA_S24_L006_R1_001.fastq.gz 3643177624 FASTQ R1_L006 unaligned CPTAC3 853bc57c-a14b-4bdd-afa6-7f050d1a37d5 385e59afd084210c33dd2fa146f7c198 { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03126.RNA-Seq.R2_L006.T C3L-03126 PDA RNA-Seq tumor CPT0166850012 190621_UNC32-K00270_0185_BH7G72BBXY_TTGCCTAG-ACCACTTA_S24_L006_R2_001.fastq.gz 3944882637 FASTQ R2_L006 unaligned CPTAC3 0edf61ba-566a-4377-899e-8721ecfc3c42 d14c036cbec363bf3044e80495f8c119 { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-03126.RNA-Seq.transcriptome.T.hg38 C3L-03126 PDA RNA-Seq tumor CPT0166850012 6d48a342-e610-484b-b518-586d1ff12f30.rna_seq.transcriptome.gdc_realn.bam 9873713859 BAM transcriptome harmonized CPTAC3 9d5f3fb8-0ab2-45cf-a942-111034a43933 0f0dca5659926e03ebdc121b35e6a098 { 'aliquot_tag': 'ALQ_79a52a43', 'gdc_sample_type': 'Primary Tumor' } C3L-03126.Targeted.T C3L-03126 PDA Targeted Sequencing tumor CPT0166850009 CPT0166850009.CustomSelection.RP-1303.PDO-18786.bam 5156861633 BAM aligned CPTAC3 bc0ffcae-edce-4b12-8227-690a07f57d30 b53234af0dcf54df0d6ac845bba6b112 { 'aliquot_tag': 'ALQ_f76cc28a', 'gdc_sample_type': 'Primary Tumor' } C3L-03126.Targeted.T.hg38 C3L-03126 PDA Targeted Sequencing tumor CPT0166850009 b4005656-4f22-47b8-a018-3105dd53b6b8_targetedsequencing_gdc_realn.bam 7230807204 BAM harmonized CPTAC3 44090b63-9a48-4986-9107-be005c734e58 4a9be116a970b0aa0046b39fd8273631 { 'aliquot_tag': 'ALQ_f76cc28a', 'gdc_sample_type': 'Primary Tumor' } C3L-03126.WGS.N C3L-03126 PDA WGS blood_normal CPT0166880002 CPT0166880002.WholeGenome.RP-1303.bam 61261340000 BAM aligned CPTAC3 6997f4a5-b856-45e9-b307-59452a042310 ca8bd36929c8b24becbb8d06af997f56 { 'aliquot_tag': 'ALQ_982edfb3', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12866,11 +13693,11 @@ C3L-03129.MethArray.Green.T C3L-03129 PDA Methylation Array tumor CPT0166930007 C3L-03129.MethArray.Red.T C3L-03129 PDA Methylation Array tumor CPT0166930007 203561620153_R07C01_Red.idat 13676211 IDAT Red NA CPTAC3 83d7f940-8978-4631-aa7a-12dd269f881a ffb4ffe32c7fa48b632341d8fe95db98 { 'aliquot_tag': 'ALQ_54c8c988', 'gdc_sample_type': 'Primary Tumor' } C3L-03129.miRNA-Seq.T C3L-03129 PDA miRNA-Seq tumor CPT0166930014 190813_UNC32-K00270_0196_AH5MCWBBXY_ACAGTG_S34_L002_R1_001.unaln.bam 144049335 BAM unaligned CPTAC3 f194f8e7-2b19-40c6-8fb6-1e9c966c40c8 71718342479d29cfe2d0e12847ce73a3 { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor' } C3L-03129.miRNA-Seq.T.hg38 C3L-03129 PDA miRNA-Seq tumor CPT0166930014 c933447f-3db9-4885-b12e-ec01655e92a2_mirnaseq_gdc_realn.bam 165270623 BAM harmonized CPTAC3 3f4290c3-2354-452b-8bd6-f9e958e550b2 beb8dcc0db5a196104db6ffb75cd7574 { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor' } -C3L-03129.RNA-Seq.chimeric.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 334d2ad5-40e4-4b8d-90eb-b4c37d7f70f2.rna_seq.chimeric.gdc_realn.bam 28671416 BAM chimeric harmonized CPTAC3 83dbc717-5da7-45f0-9001-1dd345b0a73a e33508e1b899f1974716d41eeeb116d0 { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor' } -C3L-03129.RNA-Seq.genomic.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 334d2ad5-40e4-4b8d-90eb-b4c37d7f70f2.rna_seq.genomic.gdc_realn.bam 6846881582 BAM genomic harmonized CPTAC3 41810ebb-bcde-4884-a85c-ee9ba5cc7ba2 37f81df7cdfee517ee1feed8369d3c73 { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor' } -C3L-03129.RNA-Seq.R1_L002.T C3L-03129 PDA RNA-Seq tumor CPT0166930014 190715_UNC31-K00269_0232_BH7H7CBBXY_GCGCAAGC-TCACGCCG_S7_L002_R1_001.fastq.gz 3313365104 FASTQ R1_L002 unaligned CPTAC3 e269d17b-c9c3-4ec8-a0ed-bc07de320b79 59668587254a6fa4446896e7eebbb0d3 { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor' } -C3L-03129.RNA-Seq.R2_L002.T C3L-03129 PDA RNA-Seq tumor CPT0166930014 190715_UNC31-K00269_0232_BH7H7CBBXY_GCGCAAGC-TCACGCCG_S7_L002_R2_001.fastq.gz 3472229120 FASTQ R2_L002 unaligned CPTAC3 3974e643-473b-42a9-976a-d650465305df 2045648006bb748ecd20b16c76730cd0 { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor' } -C3L-03129.RNA-Seq.transcriptome.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 334d2ad5-40e4-4b8d-90eb-b4c37d7f70f2.rna_seq.transcriptome.gdc_realn.bam 7214663786 BAM transcriptome harmonized CPTAC3 2f3395d9-8bf5-46b3-af66-bb1217b25e14 f21b78f3981a85bbcefcceb95bdc45e5 { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor' } +C3L-03129.RNA-Seq.chimeric.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 daf128ed-a227-4962-b02a-f95bad33f079.rna_seq.chimeric.gdc_realn.bam 28660223 BAM chimeric harmonized CPTAC3 fa7c1177-841c-44bf-b79f-d1ede5440471 3201206fd03fd67c332e38d388520b80 { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor' } +C3L-03129.RNA-Seq.genomic.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 daf128ed-a227-4962-b02a-f95bad33f079.rna_seq.genomic.gdc_realn.bam 6848194805 BAM genomic harmonized CPTAC3 ea20ad06-c03b-40ae-a043-a584ab40e9c3 889ecdb7349d9b37dda77b8aea0a869e { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor' } +C3L-03129.RNA-Seq.R1_L002.T C3L-03129 PDA RNA-Seq tumor CPT0166930014 190715_UNC31-K00269_0232_BH7H7CBBXY_GCGCAAGC-TCACGCCG_S7_L002_R1_001.fastq.gz 3313365104 FASTQ R1_L002 unaligned CPTAC3 e269d17b-c9c3-4ec8-a0ed-bc07de320b79 59668587254a6fa4446896e7eebbb0d3 { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-03129.RNA-Seq.R2_L002.T C3L-03129 PDA RNA-Seq tumor CPT0166930014 190715_UNC31-K00269_0232_BH7H7CBBXY_GCGCAAGC-TCACGCCG_S7_L002_R2_001.fastq.gz 3472229120 FASTQ R2_L002 unaligned CPTAC3 3974e643-473b-42a9-976a-d650465305df 2045648006bb748ecd20b16c76730cd0 { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-03129.RNA-Seq.transcriptome.T.hg38 C3L-03129 PDA RNA-Seq tumor CPT0166930014 daf128ed-a227-4962-b02a-f95bad33f079.rna_seq.transcriptome.gdc_realn.bam 8113184129 BAM transcriptome harmonized CPTAC3 5539b0e0-b0a6-443d-86f3-fd87114dc9d2 43c9fd3d9864893184050fcde473f77f { 'aliquot_tag': 'ALQ_d4daa973', 'gdc_sample_type': 'Primary Tumor' } C3L-03129.Targeted.T C3L-03129 PDA Targeted Sequencing tumor CPT0166930007 CPT0166930007.CustomSelection.RP-1303.PDO-18786.bam 4390428737 BAM aligned CPTAC3 71502fca-4531-485a-a51a-ac1a53b909ec 8afe62e1cf1dca150842e87f26e22493 { 'aliquot_tag': 'ALQ_54c8c988', 'gdc_sample_type': 'Primary Tumor' } C3L-03129.Targeted.T.hg38 C3L-03129 PDA Targeted Sequencing tumor CPT0166930007 ddab10d4-fa91-47e8-a804-ad0e91d59908_targetedsequencing_gdc_realn.bam 6110893803 BAM harmonized CPTAC3 38e1cdff-124a-4a57-828a-520c150427ba 0919428794bd5f68d14c731a8d278b09 { 'aliquot_tag': 'ALQ_54c8c988', 'gdc_sample_type': 'Primary Tumor' } C3L-03129.WGS.N C3L-03129 PDA WGS blood_normal CPT0166970002 CPT0166970002.WholeGenome.RP-1303.bam 83924508486 BAM aligned CPTAC3 3d2a655a-6fb5-4484-9823-ff67e5f68244 ec40980d65ced26a92fe2e59b0f1d8f6 { 'aliquot_tag': 'ALQ_d1229bc7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12885,13 +13712,16 @@ C3L-03143.MethArray.Green.T C3L-03143 UCEC Methylation Array tumor CPT0234080006 C3L-03143.MethArray.Red.T C3L-03143 UCEC Methylation Array tumor CPT0234080006 203273630261_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 7c03fb04-3bc5-4a13-b83d-34783acfeb90 1faec2280d88c55e1e781c60ff4dd5f6 { 'aliquot_tag': 'ALQ_95e2ba4f', 'gdc_sample_type': 'Primary Tumor' } C3L-03143.miRNA-Seq.T C3L-03143 UCEC miRNA-Seq tumor CPT0234080009 190508_UNC31-K00269_0215_BH7FYKBBXY_CACCGG_S30_L004_R1_001.unaln.bam 164396800 BAM unaligned CPTAC3 2c0733e4-8321-4784-8355-1dba5aa89050 e92da04033f7f41af8d8e20baf4cbb41 { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor' } C3L-03143.miRNA-Seq.T.hg38 C3L-03143 UCEC miRNA-Seq tumor CPT0234080009 1a313a7d-5e35-48eb-b68f-fe367c6c40fd_mirnaseq_gdc_realn.bam 184011093 BAM harmonized CPTAC3 ee12168f-0c9d-40b8-8194-b00f27b6e873 d78aec7d02e5089c485edc7e8fb4081a { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor' } -C3L-03143.RNA-Seq.chimeric.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 56a35b0b-9872-4fe2-a088-c8dfdca587de.rna_seq.chimeric.gdc_realn.bam 39646775 BAM chimeric harmonized CPTAC3 b73e3b3d-3c23-43b1-b614-130ce037ff9a e4e60dc97d37e45dbb9ba43f10bd2cef { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor' } -C3L-03143.RNA-Seq.genomic.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 56a35b0b-9872-4fe2-a088-c8dfdca587de.rna_seq.genomic.gdc_realn.bam 8766550513 BAM genomic harmonized CPTAC3 50ac319a-5d46-415d-8432-a79f6cda8ef1 91619d43684f5f8a5ab49ab4c8f37c74 { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor' } -C3L-03143.RNA-Seq.R1_L003.T C3L-03143 UCEC RNA-Seq tumor CPT0234080009 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAGAGT-TGCCACCA_S11_L003_R1_001.fastq.gz 4275917681 FASTQ R1_L003 unaligned CPTAC3 d10dd270-0122-4c05-afc7-916100671076 e8e08f96b6d1665b338312bcc33c509f { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor' } -C3L-03143.RNA-Seq.R1_.T C3L-03143 UCEC RNA-Seq tumor CPT0234100001 20210723_P2_G7_WB7988-plate2_S79_R1_001.fastq.gz 4003866395 FASTQ R1_ unaligned CPTAC3 3025687a-81fe-41b0-a2b8-9368a9dc7624 590f68c1b4293a6f23ba21c51dd31395 { 'aliquot_tag': 'ALQ_f0aab788', 'gdc_sample_type': 'Primary Tumor' } -C3L-03143.RNA-Seq.R2_L003.T C3L-03143 UCEC RNA-Seq tumor CPT0234080009 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAGAGT-TGCCACCA_S11_L003_R2_001.fastq.gz 4839861052 FASTQ R2_L003 unaligned CPTAC3 69b4c68c-ca86-49d0-982e-d25b6557cca2 2536ef6535af6c23535b456f49fc43cc { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor' } -C3L-03143.RNA-Seq.R2_.T C3L-03143 UCEC RNA-Seq tumor CPT0234100001 20210723_P2_G7_WB7988-plate2_S79_R2_001.fastq.gz 4107879253 FASTQ R2_ unaligned CPTAC3 ed77dd3c-d562-40bc-8328-4bff4e336130 2f5ae37e76d7990472f8473c759580e5 { 'aliquot_tag': 'ALQ_f0aab788', 'gdc_sample_type': 'Primary Tumor' } -C3L-03143.RNA-Seq.transcriptome.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 56a35b0b-9872-4fe2-a088-c8dfdca587de.rna_seq.transcriptome.gdc_realn.bam 12817229348 BAM transcriptome harmonized CPTAC3 b177c996-ea22-4c86-b18c-78ca5d598acc 2f8d50ebe25b14982bf0ba9e7b123265 { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor' } +C3L-03143.RNA-Seq.chimeric.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 627273b3-e151-4f2c-a53d-46b5f6928600.rna_seq.chimeric.gdc_realn.bam 39638221 BAM chimeric harmonized CPTAC3 256d68c1-c7bb-43f5-8e9a-fc672a414eee cf8d8b8210c1fc1f5231c867f2c3bc88 { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor' } +C3L-03143.RNA-Seq.chimeric.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234100001 23f847a9-e0a9-463b-910c-503e123fde1c.rna_seq.chimeric.gdc_realn.bam 148466280 BAM chimeric harmonized CPTAC3 473a5226-a452-4105-93dc-4b863d40ac15 1aea07cef6c93e610faf468b9fc6d3d0 { 'aliquot_tag': 'ALQ_f0aab788', 'gdc_sample_type': 'Primary Tumor' } +C3L-03143.RNA-Seq.genomic.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 627273b3-e151-4f2c-a53d-46b5f6928600.rna_seq.genomic.gdc_realn.bam 8767597176 BAM genomic harmonized CPTAC3 4fb4918e-08b9-4652-b0f0-1a06b6079821 c880e9d115324cf8db6e842b0e2fbc36 { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor' } +C3L-03143.RNA-Seq.genomic.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234100001 23f847a9-e0a9-463b-910c-503e123fde1c.rna_seq.genomic.gdc_realn.bam 7442978173 BAM genomic harmonized CPTAC3 aa5aba6c-35c9-46e5-8987-d4e2881a958b fbe6284fda3c6402eccff27acced99d1 { 'aliquot_tag': 'ALQ_f0aab788', 'gdc_sample_type': 'Primary Tumor' } +C3L-03143.RNA-Seq.R1_L003.T C3L-03143 UCEC RNA-Seq tumor CPT0234080009 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAGAGT-TGCCACCA_S11_L003_R1_001.fastq.gz 4275917681 FASTQ R1_L003 unaligned CPTAC3 d10dd270-0122-4c05-afc7-916100671076 e8e08f96b6d1665b338312bcc33c509f { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-03143.RNA-Seq.R2_L003.T C3L-03143 UCEC RNA-Seq tumor CPT0234080009 190523_UNC32-K00270_0176_BH7CW7BBXY_CATAGAGT-TGCCACCA_S11_L003_R2_001.fastq.gz 4839861052 FASTQ R2_L003 unaligned CPTAC3 69b4c68c-ca86-49d0-982e-d25b6557cca2 2536ef6535af6c23535b456f49fc43cc { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-03143.RNA-Seq.T C3L-03143 UCEC RNA-Seq tumor CPT0234100001 20210723_P2_G7_WB7988-plate2_S79_R1_001.fastq.gz 4003866395 FASTQ unaligned CPTAC3 3025687a-81fe-41b0-a2b8-9368a9dc7624 590f68c1b4293a6f23ba21c51dd31395 +C3L-03143.RNA-Seq.T C3L-03143 UCEC RNA-Seq tumor CPT0234100001 20210723_P2_G7_WB7988-plate2_S79_R2_001.fastq.gz 4107879253 FASTQ unaligned CPTAC3 ed77dd3c-d562-40bc-8328-4bff4e336130 2f5ae37e76d7990472f8473c759580e5 +C3L-03143.RNA-Seq.transcriptome.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234080009 627273b3-e151-4f2c-a53d-46b5f6928600.rna_seq.transcriptome.gdc_realn.bam 14554117741 BAM transcriptome harmonized CPTAC3 a92885dc-60a9-4531-927b-2fa890d66e42 ce89cee460c44505ad37f7ec112486b9 { 'aliquot_tag': 'ALQ_55da7de', 'gdc_sample_type': 'Primary Tumor' } +C3L-03143.RNA-Seq.transcriptome.T.hg38 C3L-03143 UCEC RNA-Seq tumor CPT0234100001 23f847a9-e0a9-463b-910c-503e123fde1c.rna_seq.transcriptome.gdc_realn.bam 4288093961 BAM transcriptome harmonized CPTAC3 262098e9-15c9-4633-8a9c-62e1a36b26ec 8757a49956c31f01af62851c2a6b875f { 'aliquot_tag': 'ALQ_f0aab788', 'gdc_sample_type': 'Primary Tumor' } C3L-03143.WGS.N C3L-03143 UCEC WGS blood_normal CPT0234140002 CPT0234140002.WholeGenome.RP-1303.bam 81777282121 BAM aligned CPTAC3 5e8c92ab-8707-41e9-b476-cf8af8395e46 ccfd16dccbac5d8d073598699bf55dac { 'aliquot_tag': 'ALQ_9c2340f2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03143.WGS.N.hg38 C3L-03143 UCEC WGS blood_normal CPT0234140002 5dc96511-fc19-4b55-b9e0-55b3ef2fb176_wgs_gdc_realn.bam 121296420267 BAM harmonized CPTAC3 848d8f16-6168-4777-bb4d-7d9a895ff808 d2fb0bd593351f5ba61b184a7e7716c9 { 'aliquot_tag': 'ALQ_9c2340f2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03143.WGS.T C3L-03143 UCEC WGS tumor CPT0234080006 CPT0234080006.WholeGenome.RP-1303.bam 71529515128 BAM aligned CPTAC3 b936861b-adf3-40dd-983f-8d49b446f341 572ec1f14b74a7f507ce6fc512ccdf0d { 'aliquot_tag': 'ALQ_95e2ba4f', 'gdc_sample_type': 'Primary Tumor' } @@ -12902,19 +13732,19 @@ C3L-03143.WXS.T C3L-03143 UCEC WXS tumor CPT0234080006 CPT0234080006.WholeExome. C3L-03143.WXS.T.hg38 C3L-03143 UCEC WXS tumor CPT0234080006 42b2cd2c-215d-443f-9b76-1d80d9b629c5_wxs_gdc_realn.bam 30018381079 BAM harmonized CPTAC3 e2328dfa-307b-4890-bc96-e41be7a811d1 1e7286d63cf2a5e0be570558c730708b { 'aliquot_tag': 'ALQ_95e2ba4f', 'gdc_sample_type': 'Primary Tumor' } C3L-03152.miRNA-Seq.T C3L-03152 UCEC miRNA-Seq tumor CPT0234630038 190508_UNC31-K00269_0215_BH7FYKBBXY_GACGAC_S41_L002_R1_001.unaln.bam 247865069 BAM unaligned CPTAC3 23d00383-8d77-42ad-8c83-8e97097939d0 f81d24c658c3d4ca972c13aad5b79d2a { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor' } C3L-03152.miRNA-Seq.T.hg38 C3L-03152 UCEC miRNA-Seq tumor CPT0234630038 92793c57-8634-48e6-a13b-d44c5f9aef67_mirnaseq_gdc_realn.bam 278960157 BAM harmonized CPTAC3 697eecd4-1661-4f3e-8ccc-f3cff74a9414 6c357f1e16688ee81bba827c1992af28 { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor' } -C3L-03152.RNA-Seq.chimeric.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 5b0d2211-12a0-4801-8ea7-19eda9a93d5f.rna_seq.chimeric.gdc_realn.bam 36905523 BAM chimeric harmonized CPTAC3 b37b20fe-20a9-4148-9ec5-19b58f994ae7 2db3e332ed39c6e339a38d8d3df82fac { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor' } -C3L-03152.RNA-Seq.genomic.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 5b0d2211-12a0-4801-8ea7-19eda9a93d5f.rna_seq.genomic.gdc_realn.bam 8583065754 BAM genomic harmonized CPTAC3 099854d6-3bd7-4864-bf81-b752d6e1f939 fe7cfe4a6fbb00dd413c2d33aa821542 { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor' } -C3L-03152.RNA-Seq.R1_L007.T C3L-03152 UCEC RNA-Seq tumor CPT0234630038 190501_UNC31-K00269_0213_BH5JYFBBXY_ATATGGAT-CTGTATTA_S25_L007_R1_001.fastq.gz 4282306686 FASTQ R1_L007 unaligned CPTAC3 18238827-1f93-497a-9cca-f382012102e0 5b4339c02d9162a2a68055a2cb1e8654 { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor' } -C3L-03152.RNA-Seq.R2_L007.T C3L-03152 UCEC RNA-Seq tumor CPT0234630038 190501_UNC31-K00269_0213_BH5JYFBBXY_ATATGGAT-CTGTATTA_S25_L007_R2_001.fastq.gz 4765816388 FASTQ R2_L007 unaligned CPTAC3 04db34c0-2681-41e0-a7e9-70d87522b5f2 b034aa5349666089aafaef0eae3fbf61 { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor' } -C3L-03152.RNA-Seq.transcriptome.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 5b0d2211-12a0-4801-8ea7-19eda9a93d5f.rna_seq.transcriptome.gdc_realn.bam 10596291954 BAM transcriptome harmonized CPTAC3 de122bd5-21c1-40e9-b8f7-e68518df2617 f961d85282793b2c583a8b99ade2b689 { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor' } +C3L-03152.RNA-Seq.chimeric.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 7b0fbceb-64dc-4f16-8e29-bfacea10d6b6.rna_seq.chimeric.gdc_realn.bam 36880693 BAM chimeric harmonized CPTAC3 2f8ab2fa-836b-46ff-87ab-7a5d93caaf5a 91ec070dc163f07a583373d61fb9ca2b { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor' } +C3L-03152.RNA-Seq.genomic.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 7b0fbceb-64dc-4f16-8e29-bfacea10d6b6.rna_seq.genomic.gdc_realn.bam 8584149651 BAM genomic harmonized CPTAC3 cb90f173-90c6-47c6-a8aa-5f7b51de0e0d 152d7438dac51d3bdea7fc12e04fe01e { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor' } +C3L-03152.RNA-Seq.R1_L007.T C3L-03152 UCEC RNA-Seq tumor CPT0234630038 190501_UNC31-K00269_0213_BH5JYFBBXY_ATATGGAT-CTGTATTA_S25_L007_R1_001.fastq.gz 4282306686 FASTQ R1_L007 unaligned CPTAC3 18238827-1f93-497a-9cca-f382012102e0 5b4339c02d9162a2a68055a2cb1e8654 { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-03152.RNA-Seq.R2_L007.T C3L-03152 UCEC RNA-Seq tumor CPT0234630038 190501_UNC31-K00269_0213_BH5JYFBBXY_ATATGGAT-CTGTATTA_S25_L007_R2_001.fastq.gz 4765816388 FASTQ R2_L007 unaligned CPTAC3 04db34c0-2681-41e0-a7e9-70d87522b5f2 b034aa5349666089aafaef0eae3fbf61 { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-03152.RNA-Seq.transcriptome.T.hg38 C3L-03152 UCEC RNA-Seq tumor CPT0234630038 7b0fbceb-64dc-4f16-8e29-bfacea10d6b6.rna_seq.transcriptome.gdc_realn.bam 12188557829 BAM transcriptome harmonized CPTAC3 b371d4b1-78a1-44c3-a94b-0677293a9ea4 8e79ab3047ba581be041fc3e48c45172 { 'aliquot_tag': 'ALQ_f8fe1687', 'gdc_sample_type': 'Primary Tumor' } C3L-03260.MethArray.Green.T C3L-03260 GBM Methylation Array tumor CPT0189250006 203219650177_R05C01_Grn.idat 13676222 IDAT Green NA CPTAC3 5a0942e8-d03a-4a4b-ad6e-a0453faf6699 9fcbde7dd6d7210c2b507123fae0f238 { 'aliquot_tag': 'ALQ_258a9ea6', 'gdc_sample_type': 'Primary Tumor' } C3L-03260.MethArray.Red.T C3L-03260 GBM Methylation Array tumor CPT0189250006 203219650177_R05C01_Red.idat 13676222 IDAT Red NA CPTAC3 ef4699cd-0217-4301-a830-d5c7727d440c 03c488ea267dd7bdd4f20d0ad3d6935e { 'aliquot_tag': 'ALQ_258a9ea6', 'gdc_sample_type': 'Primary Tumor' } C3L-03260.miRNA-Seq.T C3L-03260 GBM miRNA-Seq tumor CPT0189250009 181219_UNC31-K00269_0173_BHYGJJBBXX_CAGATC_S7_L003_R1_001.unaln.bam 395616015 BAM unaligned CPTAC3 b54c19ab-bc31-438a-9f66-9284562c1769 7e72921776f2f44a975273f76d59374c { 'aliquot_tag': 'ALQ_b5358337', 'gdc_sample_type': 'Primary Tumor' } C3L-03260.miRNA-Seq.T.hg38 C3L-03260 GBM miRNA-Seq tumor CPT0189250009 d55af09e-b76d-4dfb-be95-b77afa6083c5_mirnaseq_gdc_realn.bam 440597061 BAM harmonized CPTAC3 9445d563-f2f6-48ce-bc56-63b3a74bf63d 9b2e857615694b9b513fa5a616434d95 { 'aliquot_tag': 'ALQ_b5358337', 'gdc_sample_type': 'Primary Tumor' } C3L-03260.RNA-Seq.chimeric.T.hg38 C3L-03260 GBM RNA-Seq tumor CPT0189250009 936b45e8-3c7b-4e69-b58c-562a298685dc.rna_seq.chimeric.gdc_realn.bam 173147188 BAM chimeric harmonized CPTAC3 fd684963-2daf-42c9-be62-f01de81d73e8 422e14cf5d9765d1949f00ab8d9c39e7 { 'aliquot_tag': 'ALQ_b5358337', 'gdc_sample_type': 'Primary Tumor' } -C3L-03260.RNA-Seq.genomic.T.hg38 C3L-03260 GBM RNA-Seq tumor CPT0189250009 936b45e8-3c7b-4e69-b58c-562a298685dc.rna_seq.genomic.gdc_realn.bam 8296113252 BAM genomic harmonized CPTAC3 61926764-255d-4979-8e51-2c9003c48a88 f65855fdb9c52e1f94cbb48b073a8e2d { 'aliquot_tag': 'ALQ_b5358337', 'gdc_sample_type': 'Primary Tumor' } -C3L-03260.RNA-Seq.R1_L002.T C3L-03260 GBM RNA-Seq tumor CPT0189250009 181002_UNC31-K00269_0156_AHWN3HBBXX_CAGATC_S5_L002_R1_001.fastq.gz 3783047594 FASTQ R1_L002 unaligned CPTAC3 5abdb618-d893-4beb-b3cd-274c0b41fe38 ca9d4f7ebb49b2b1d07b70a03b119b35 { 'aliquot_tag': 'ALQ_b5358337', 'gdc_sample_type': 'Primary Tumor' } -C3L-03260.RNA-Seq.R2_L002.T C3L-03260 GBM RNA-Seq tumor CPT0189250009 181002_UNC31-K00269_0156_AHWN3HBBXX_CAGATC_S5_L002_R2_001.fastq.gz 4064400209 FASTQ R2_L002 unaligned CPTAC3 f2ed3a7a-ad2e-4277-87a1-35487339dcaa 5ad47b3d3c92cf61014d5dbafbc7fa82 { 'aliquot_tag': 'ALQ_b5358337', 'gdc_sample_type': 'Primary Tumor' } +C3L-03260.RNA-Seq.genomic.T.hg38 C3L-03260 GBM RNA-Seq tumor CPT0189250009 936b45e8-3c7b-4e69-b58c-562a298685dc.rna_seq.genomic.gdc_realn.bam 8296113252 BAM genomic harmonized CPTAC3 d5dcfad0-ff00-4e04-88fb-db1befc8fef4 f65855fdb9c52e1f94cbb48b073a8e2d { 'aliquot_tag': 'ALQ_b5358337', 'gdc_sample_type': 'Primary Tumor' } +C3L-03260.RNA-Seq.R1_L002.T C3L-03260 GBM RNA-Seq tumor CPT0189250009 181002_UNC31-K00269_0156_AHWN3HBBXX_CAGATC_S5_L002_R1_001.fastq.gz 3783047594 FASTQ R1_L002 unaligned CPTAC3 5abdb618-d893-4beb-b3cd-274c0b41fe38 ca9d4f7ebb49b2b1d07b70a03b119b35 { 'aliquot_tag': 'ALQ_b5358337', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-03260.RNA-Seq.R2_L002.T C3L-03260 GBM RNA-Seq tumor CPT0189250009 181002_UNC31-K00269_0156_AHWN3HBBXX_CAGATC_S5_L002_R2_001.fastq.gz 4064400209 FASTQ R2_L002 unaligned CPTAC3 f2ed3a7a-ad2e-4277-87a1-35487339dcaa 5ad47b3d3c92cf61014d5dbafbc7fa82 { 'aliquot_tag': 'ALQ_b5358337', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-03260.RNA-Seq.transcriptome.T.hg38 C3L-03260 GBM RNA-Seq tumor CPT0189250009 936b45e8-3c7b-4e69-b58c-562a298685dc.rna_seq.transcriptome.gdc_realn.bam 9663164401 BAM transcriptome harmonized CPTAC3 30a06215-164f-4e8b-b874-6292ec21b9d3 6542e27bcfd2607f60ef33cee34599e6 { 'aliquot_tag': 'ALQ_b5358337', 'gdc_sample_type': 'Primary Tumor' } C3L-03260.WGS.N C3L-03260 GBM WGS blood_normal CPT0190200002 CPT0190200002.WholeGenome.RP-1303.bam 58748641881 BAM aligned CPTAC3 6cbb8c3a-9a3b-4859-abab-b66a92d587d7 48c46b8e22303016eb995cec0c2fec51 { 'aliquot_tag': 'ALQ_b3359082', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03260.WGS.N.hg38 C3L-03260 GBM WGS blood_normal CPT0190200002 6a194913-6f77-46e2-8eb6-19fe1ff78405_wgs_gdc_realn.bam 84625597942 BAM harmonized CPTAC3 e38e44be-6fcf-4507-9438-e015dcd8aed1 659092ddb65df36eb0884cb012826503 { 'aliquot_tag': 'ALQ_b3359082', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12934,16 +13764,16 @@ C3L-03262.miRNA-Seq.A C3L-03262 LUAD miRNA-Seq tissue_normal CPT0189310009 19013 C3L-03262.miRNA-Seq.A.hg38 C3L-03262 LUAD miRNA-Seq tissue_normal CPT0189310009 b5930a04-f24c-459e-b695-d1d8ef8b7dc7_mirnaseq_gdc_realn.bam 309077234 BAM harmonized CPTAC3 65242e56-c359-4191-b4e5-b30a0be47213 9ad11388304c38d37ee2d2aea811c57a { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03262.miRNA-Seq.T C3L-03262 LUAD miRNA-Seq tumor CPT0189280010 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGGCA_S48_L007_R1_001.unaln.bam 200220207 BAM unaligned CPTAC3 17176827-3f35-4941-840e-918657a45ad4 73492db7b07e489f2781b796bdeaf72a { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor' } C3L-03262.miRNA-Seq.T.hg38 C3L-03262 LUAD miRNA-Seq tumor CPT0189280010 d4b39619-5bbe-4fac-9d78-454dfd82821a_mirnaseq_gdc_realn.bam 219721355 BAM harmonized CPTAC3 7364073f-8b8a-4953-a1c4-0887c50bc844 f80b7bc56f9d468a17bb15ed195290cd { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor' } -C3L-03262.RNA-Seq.chimeric.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 457c67bd-c379-4c48-8856-626786c8d69c.rna_seq.chimeric.gdc_realn.bam 52233852 BAM chimeric harmonized CPTAC3 862d9ce6-4ef5-4d08-91da-ff09d2d667fc f2a5cf490c3f76a4af05ec915c507fca { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03262.RNA-Seq.chimeric.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 9e60220c-923f-4787-a7b7-0e4d65b0e13b.rna_seq.chimeric.gdc_realn.bam 42780037 BAM chimeric harmonized CPTAC3 da9c51f5-a337-4bfc-817b-28d4f2978aed ee0c8899e5d477d7eb33cfba45389b9d { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor' } -C3L-03262.RNA-Seq.genomic.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 457c67bd-c379-4c48-8856-626786c8d69c.rna_seq.genomic.gdc_realn.bam 8475124760 BAM genomic harmonized CPTAC3 78f9115d-d61c-45bc-85dd-e501a85a1488 a5f45532c2af3dc7cb410ffd25cf9514 { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03262.RNA-Seq.genomic.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 9e60220c-923f-4787-a7b7-0e4d65b0e13b.rna_seq.genomic.gdc_realn.bam 6701127711 BAM genomic harmonized CPTAC3 9e38192a-585c-432d-9be1-b823b539032d f0bdf160d4aa49b2aebd843a1f652154 { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor' } -C3L-03262.RNA-Seq.R1_L003.A C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 3840371385 FASTQ R1_L003 unaligned CPTAC3 5a08b93b-d972-417f-9eb4-1bb0938b540a cfa4ad144e2d7919f8a3b5344bee7b3d { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03262.RNA-Seq.R1_L005.T C3L-03262 LUAD RNA-Seq tumor CPT0189280010 190131_UNC32-K00270_0142_BH3LFYBBXY_ATTCCT_S19_L005_R1_001.fastq.gz 3070816096 FASTQ R1_L005 unaligned CPTAC3 3c370f76-baed-452e-af24-0b557400ea8b 78390bf3f6563075a27341c339b13310 { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor' } -C3L-03262.RNA-Seq.R2_L003.A C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4273435058 FASTQ R2_L003 unaligned CPTAC3 db3a60ba-b8b9-4c8b-a49e-234c1640f018 3c95e0862a35818ef099c045cd81d267 { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03262.RNA-Seq.R2_L005.T C3L-03262 LUAD RNA-Seq tumor CPT0189280010 190131_UNC32-K00270_0142_BH3LFYBBXY_ATTCCT_S19_L005_R2_001.fastq.gz 3346174502 FASTQ R2_L005 unaligned CPTAC3 b6dd0e9a-b7ec-418a-8e49-c40d480009dd 75a8d181e244deb0463f298fe152117c { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor' } -C3L-03262.RNA-Seq.transcriptome.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 457c67bd-c379-4c48-8856-626786c8d69c.rna_seq.transcriptome.gdc_realn.bam 7935176683 BAM transcriptome harmonized CPTAC3 f711a4cc-4f81-46cb-9f24-ec967d22657f 595ef004bd1415f3614f8313c56b294f { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03262.RNA-Seq.transcriptome.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 9e60220c-923f-4787-a7b7-0e4d65b0e13b.rna_seq.transcriptome.gdc_realn.bam 6019893344 BAM transcriptome harmonized CPTAC3 94fe1e79-5d38-4c1a-bbda-7e4bf4f2711a fe6fe52030a7d4a3d4f0b7a4474cde5a { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor' } +C3L-03262.RNA-Seq.chimeric.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 4c03b155-61d8-4a0d-88fd-eea302863ea6.rna_seq.chimeric.gdc_realn.bam 52204692 BAM chimeric harmonized CPTAC3 2457cb8a-e1ef-4944-876c-c443f11c6a17 fb72167841a292bc2843465fb440de82 { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03262.RNA-Seq.chimeric.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 96d559d2-7513-4dd7-93a4-bcd28211325d.rna_seq.chimeric.gdc_realn.bam 42765717 BAM chimeric harmonized CPTAC3 5cbb64d5-f587-4523-a0d5-f93c5174e1d1 402001631761bdbd6918cff6083a9ae7 { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor' } +C3L-03262.RNA-Seq.genomic.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 4c03b155-61d8-4a0d-88fd-eea302863ea6.rna_seq.genomic.gdc_realn.bam 8476276543 BAM genomic harmonized CPTAC3 b222ca89-0f2c-4461-bdf4-f3c81bca1bc6 186e6aee27528c649eac2e5510e6eb51 { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03262.RNA-Seq.genomic.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 96d559d2-7513-4dd7-93a4-bcd28211325d.rna_seq.genomic.gdc_realn.bam 6702338505 BAM genomic harmonized CPTAC3 c593702c-11f0-4efa-b947-b6aeab17c75a 3256443ed51e31860c61854a7fba7d63 { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor' } +C3L-03262.RNA-Seq.R1_L003.A C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 3840371385 FASTQ R1_L003 unaligned CPTAC3 5a08b93b-d972-417f-9eb4-1bb0938b540a cfa4ad144e2d7919f8a3b5344bee7b3d { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-03262.RNA-Seq.R1_L005.T C3L-03262 LUAD RNA-Seq tumor CPT0189280010 190131_UNC32-K00270_0142_BH3LFYBBXY_ATTCCT_S19_L005_R1_001.fastq.gz 3070816096 FASTQ R1_L005 unaligned CPTAC3 3c370f76-baed-452e-af24-0b557400ea8b 78390bf3f6563075a27341c339b13310 { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-03262.RNA-Seq.R2_L003.A C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4273435058 FASTQ R2_L003 unaligned CPTAC3 db3a60ba-b8b9-4c8b-a49e-234c1640f018 3c95e0862a35818ef099c045cd81d267 { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-03262.RNA-Seq.R2_L005.T C3L-03262 LUAD RNA-Seq tumor CPT0189280010 190131_UNC32-K00270_0142_BH3LFYBBXY_ATTCCT_S19_L005_R2_001.fastq.gz 3346174502 FASTQ R2_L005 unaligned CPTAC3 b6dd0e9a-b7ec-418a-8e49-c40d480009dd 75a8d181e244deb0463f298fe152117c { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-03262.RNA-Seq.transcriptome.A.hg38 C3L-03262 LUAD RNA-Seq tissue_normal CPT0189310009 4c03b155-61d8-4a0d-88fd-eea302863ea6.rna_seq.transcriptome.gdc_realn.bam 9013882720 BAM transcriptome harmonized CPTAC3 11c6f0d1-5cad-4979-ac06-29daef1a6cfa 2855bf6bacd224d1663408c13983111b { 'aliquot_tag': 'ALQ_8be9f652', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03262.RNA-Seq.transcriptome.T.hg38 C3L-03262 LUAD RNA-Seq tumor CPT0189280010 96d559d2-7513-4dd7-93a4-bcd28211325d.rna_seq.transcriptome.gdc_realn.bam 6788514751 BAM transcriptome harmonized CPTAC3 4746b60c-0730-4c29-9f9f-358f4fd2c551 82a276a095740f909ea30f87504e113f { 'aliquot_tag': 'ALQ_2d62ce63', 'gdc_sample_type': 'Primary Tumor' } C3L-03262.WGS.N C3L-03262 LUAD WGS blood_normal CPT0190210002 CPT0190210002.WholeGenome.RP-1303.bam 56001124873 BAM aligned CPTAC3 bdbc349f-c96e-4c0f-b6f9-a56a37a748bb 7f1e7642539e24ee9bcdffd6b9000a3f { 'aliquot_tag': 'ALQ_8e55b932', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03262.WGS.N.hg38 C3L-03262 LUAD WGS blood_normal CPT0190210002 a93a956b-f67c-46da-8c83-18e69db799ed_wgs_gdc_realn.bam 82723706130 BAM harmonized CPTAC3 9359c8e3-33ed-4620-9b71-5c479dd2a9f4 db2f0250a524f7391540d8a50bc928f1 { 'aliquot_tag': 'ALQ_8e55b932', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03262.WGS.T C3L-03262 LUAD WGS tumor CPT0189280007 CPT0189280007.WholeGenome.RP-1303.bam 54395352915 BAM aligned CPTAC3 efea4fca-95c3-416a-bce8-f43c22c3bc49 e6f21585b81bc57e582dd32836223dfe { 'aliquot_tag': 'ALQ_aa1d6a81', 'gdc_sample_type': 'Primary Tumor' } @@ -12956,13 +13786,16 @@ C3L-03264.MethArray.Green.T C3L-03264 UCEC Methylation Array tumor CPT0225010006 C3L-03264.MethArray.Red.T C3L-03264 UCEC Methylation Array tumor CPT0225010006 203561450084_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 62be6484-b666-4156-8b21-dd09d72eca7a 21f47b1ccde3e7747539af6df9870f2f { 'aliquot_tag': 'ALQ_f22fd314', 'gdc_sample_type': 'Primary Tumor' } C3L-03264.miRNA-Seq.T C3L-03264 UCEC miRNA-Seq tumor CPT0225010009 190508_UNC31-K00269_0215_BH7FYKBBXY_CACTCA_S32_L004_R1_001.unaln.bam 136485059 BAM unaligned CPTAC3 9b560185-f3f6-4da7-8c82-7faf7f280af4 cc74ec20dbc79354c4ba604df5057ba8 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor' } C3L-03264.miRNA-Seq.T.hg38 C3L-03264 UCEC miRNA-Seq tumor CPT0225010009 31509de3-c200-4f33-bafe-31bfb8b96f9d_mirnaseq_gdc_realn.bam 159824027 BAM harmonized CPTAC3 625118f8-057b-4499-87d4-81e581a3baf2 1d2273b5193e73077ce28f0d01d56b76 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor' } -C3L-03264.RNA-Seq.chimeric.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 2d503641-1674-4e64-a2d6-781cf3f81c10.rna_seq.chimeric.gdc_realn.bam 33092344 BAM chimeric harmonized CPTAC3 a9d9f4bf-46fb-408d-8d0f-5437d33dec66 5697589719c6220a829be230f36644d5 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor' } -C3L-03264.RNA-Seq.genomic.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 2d503641-1674-4e64-a2d6-781cf3f81c10.rna_seq.genomic.gdc_realn.bam 7830719948 BAM genomic harmonized CPTAC3 c96698ba-3952-41be-8849-65f9453d599f e91bc02eb8d14d74f69567d051435843 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor' } -C3L-03264.RNA-Seq.R1_L003.T C3L-03264 UCEC RNA-Seq tumor CPT0225010009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGAATAT-TCTCATTC_S12_L003_R1_001.fastq.gz 3732369076 FASTQ R1_L003 unaligned CPTAC3 a886e1ec-e5eb-4ae0-8e6c-80db1f2b2bee eb29fdcf7e7c2313311b10d3413d99a3 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor' } -C3L-03264.RNA-Seq.R1_.T C3L-03264 UCEC RNA-Seq tumor CPT0225040001 20210723_P2_F10_WB7988-plate2_S70_R1_001.fastq.gz 3262610728 FASTQ R1_ unaligned CPTAC3 645ff25d-ffd4-4eee-9e09-5d921e95f431 b3d87a7397c1211461c5280ff2a0630a { 'aliquot_tag': 'ALQ_a4abc9c7', 'gdc_sample_type': 'Primary Tumor' } -C3L-03264.RNA-Seq.R2_L003.T C3L-03264 UCEC RNA-Seq tumor CPT0225010009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGAATAT-TCTCATTC_S12_L003_R2_001.fastq.gz 4154435970 FASTQ R2_L003 unaligned CPTAC3 87e7cbed-df5d-4f19-bccc-ebcaa17a9576 9491705df58a70a11920eb4371fe65e0 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor' } -C3L-03264.RNA-Seq.R2_.T C3L-03264 UCEC RNA-Seq tumor CPT0225040001 20210723_P2_F10_WB7988-plate2_S70_R2_001.fastq.gz 3423913770 FASTQ R2_ unaligned CPTAC3 db2853d7-0b49-47dc-85d3-0b33a2ff9f25 68548b01133b7cddc9adabfc3684003a { 'aliquot_tag': 'ALQ_a4abc9c7', 'gdc_sample_type': 'Primary Tumor' } -C3L-03264.RNA-Seq.transcriptome.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 2d503641-1674-4e64-a2d6-781cf3f81c10.rna_seq.transcriptome.gdc_realn.bam 9951561430 BAM transcriptome harmonized CPTAC3 34e4df1e-1a93-4779-b08c-68355b97c304 31a930691f8c284e9b3d1791387800f6 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor' } +C3L-03264.RNA-Seq.chimeric.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 58829492-7e23-49cf-8f2c-44ddec6e907a.rna_seq.chimeric.gdc_realn.bam 33074568 BAM chimeric harmonized CPTAC3 fa4dcfb0-abc1-496f-b8b2-9c27077fe7ad 8b6863fb9dbdb1365bdc97e7cbb8b090 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor' } +C3L-03264.RNA-Seq.chimeric.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225040001 309772ee-9dd9-4430-bbfb-0fee5f68d6b5.rna_seq.chimeric.gdc_realn.bam 109893385 BAM chimeric harmonized CPTAC3 b697a3d2-68b4-4a98-8041-1e6d7a36650a 49947d80d7672ae6ff5bc13028b8a989 { 'aliquot_tag': 'ALQ_a4abc9c7', 'gdc_sample_type': 'Primary Tumor' } +C3L-03264.RNA-Seq.genomic.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 58829492-7e23-49cf-8f2c-44ddec6e907a.rna_seq.genomic.gdc_realn.bam 7831804669 BAM genomic harmonized CPTAC3 52895fab-4d9f-4e6b-88f6-03a7172961ef ab92698bdd5979d14629ccf719c0322d { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor' } +C3L-03264.RNA-Seq.genomic.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225040001 309772ee-9dd9-4430-bbfb-0fee5f68d6b5.rna_seq.genomic.gdc_realn.bam 5923501127 BAM genomic harmonized CPTAC3 ef1837c8-9fc8-4b23-b168-878e05c690f5 139677e7a9bbdc3c2806808066c4ed52 { 'aliquot_tag': 'ALQ_a4abc9c7', 'gdc_sample_type': 'Primary Tumor' } +C3L-03264.RNA-Seq.R1_L003.T C3L-03264 UCEC RNA-Seq tumor CPT0225010009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGAATAT-TCTCATTC_S12_L003_R1_001.fastq.gz 3732369076 FASTQ R1_L003 unaligned CPTAC3 a886e1ec-e5eb-4ae0-8e6c-80db1f2b2bee eb29fdcf7e7c2313311b10d3413d99a3 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-03264.RNA-Seq.R2_L003.T C3L-03264 UCEC RNA-Seq tumor CPT0225010009 190523_UNC32-K00270_0176_BH7CW7BBXY_GTGAATAT-TCTCATTC_S12_L003_R2_001.fastq.gz 4154435970 FASTQ R2_L003 unaligned CPTAC3 87e7cbed-df5d-4f19-bccc-ebcaa17a9576 9491705df58a70a11920eb4371fe65e0 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-03264.RNA-Seq.T C3L-03264 UCEC RNA-Seq tumor CPT0225040001 20210723_P2_F10_WB7988-plate2_S70_R1_001.fastq.gz 3262610728 FASTQ unaligned CPTAC3 645ff25d-ffd4-4eee-9e09-5d921e95f431 b3d87a7397c1211461c5280ff2a0630a +C3L-03264.RNA-Seq.T C3L-03264 UCEC RNA-Seq tumor CPT0225040001 20210723_P2_F10_WB7988-plate2_S70_R2_001.fastq.gz 3423913770 FASTQ unaligned CPTAC3 db2853d7-0b49-47dc-85d3-0b33a2ff9f25 68548b01133b7cddc9adabfc3684003a +C3L-03264.RNA-Seq.transcriptome.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225010009 58829492-7e23-49cf-8f2c-44ddec6e907a.rna_seq.transcriptome.gdc_realn.bam 11330055890 BAM transcriptome harmonized CPTAC3 df2e6536-afd7-4938-a17f-5e68174659b6 d35c1d72d0dc6d6bd77d916a3abfeab8 { 'aliquot_tag': 'ALQ_6290ce85', 'gdc_sample_type': 'Primary Tumor' } +C3L-03264.RNA-Seq.transcriptome.T.hg38 C3L-03264 UCEC RNA-Seq tumor CPT0225040001 309772ee-9dd9-4430-bbfb-0fee5f68d6b5.rna_seq.transcriptome.gdc_realn.bam 3580247072 BAM transcriptome harmonized CPTAC3 c55a3272-b124-41b4-9195-ea6039aa0614 7699b582c7fd80d7e939754ffa1bd26b { 'aliquot_tag': 'ALQ_a4abc9c7', 'gdc_sample_type': 'Primary Tumor' } C3L-03264.WGS.N C3L-03264 UCEC WGS blood_normal CPT0226020002 CPT0226020002.WholeGenome.RP-1303.bam 73321037730 BAM aligned CPTAC3 69608827-cd61-4522-b84b-2f5ce6f2352b c211c1697d5f78fc83192b47c4fe251a { 'aliquot_tag': 'ALQ_830a7740', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03264.WGS.N.hg38 C3L-03264 UCEC WGS blood_normal CPT0226020002 46030a5a-7f1d-436a-b1b1-ddc24aa61ef4_wgs_gdc_realn.bam 104122387946 BAM harmonized CPTAC3 474412fc-4de6-4cea-bd43-f38b31f26baf bdd18332893d68ec1b1095020116350f { 'aliquot_tag': 'ALQ_830a7740', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03264.WGS.T C3L-03264 UCEC WGS tumor CPT0225010006 CPT0225010006.WholeGenome.RP-1303.bam 103278833081 BAM aligned CPTAC3 4b0f89b4-6416-4ff5-a792-729f1048c08c 32f2029ef3295e5544b578bb6fbc4235 { 'aliquot_tag': 'ALQ_f22fd314', 'gdc_sample_type': 'Primary Tumor' } @@ -12976,9 +13809,9 @@ C3L-03266.MethArray.Red.T C3L-03266 GBM Methylation Array tumor CPT0189460006 20 C3L-03266.miRNA-Seq.T C3L-03266 GBM miRNA-Seq tumor CPT0189460009 181219_UNC31-K00269_0173_BHYGJJBBXX_ACTTGA_S8_L003_R1_001.unaln.bam 302168951 BAM unaligned CPTAC3 be4e470f-45dc-4741-99d4-4bf9fea3dd20 7db12fbebe27b324d81cf41343182134 { 'aliquot_tag': 'ALQ_24cc1afa', 'gdc_sample_type': 'Primary Tumor' } C3L-03266.miRNA-Seq.T.hg38 C3L-03266 GBM miRNA-Seq tumor CPT0189460009 49f04fce-230f-4798-bb2a-e20f6a41f617_mirnaseq_gdc_realn.bam 345944161 BAM harmonized CPTAC3 521b7c4f-872c-4172-9210-8d81e968aec4 347264366a5f2e04e1d91f17db9e2ffc { 'aliquot_tag': 'ALQ_24cc1afa', 'gdc_sample_type': 'Primary Tumor' } C3L-03266.RNA-Seq.chimeric.T.hg38 C3L-03266 GBM RNA-Seq tumor CPT0189460009 517e37c3-64f8-40fa-8b6c-3c74e423ea1a.rna_seq.chimeric.gdc_realn.bam 54827502 BAM chimeric harmonized CPTAC3 63ab3693-9fdc-4f4b-afb1-c800398d8794 1665978cf525e8df3da43a46d0372c1f { 'aliquot_tag': 'ALQ_24cc1afa', 'gdc_sample_type': 'Primary Tumor' } -C3L-03266.RNA-Seq.genomic.T.hg38 C3L-03266 GBM RNA-Seq tumor CPT0189460009 517e37c3-64f8-40fa-8b6c-3c74e423ea1a.rna_seq.genomic.gdc_realn.bam 7498932136 BAM genomic harmonized CPTAC3 a323a00c-2535-47e2-8c28-ff2a6a0f3884 a8fe6a4ffac9ae5c25eb34c1e79d02d0 { 'aliquot_tag': 'ALQ_24cc1afa', 'gdc_sample_type': 'Primary Tumor' } -C3L-03266.RNA-Seq.R1_L002.T C3L-03266 GBM RNA-Seq tumor CPT0189460009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACTTGA_S6_L002_R1_001.fastq.gz 3455029772 FASTQ R1_L002 unaligned CPTAC3 f21763d0-27de-4280-9b52-0ed9b74804de 0e8a645812512dff3163c67e87db8a32 { 'aliquot_tag': 'ALQ_24cc1afa', 'gdc_sample_type': 'Primary Tumor' } -C3L-03266.RNA-Seq.R2_L002.T C3L-03266 GBM RNA-Seq tumor CPT0189460009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACTTGA_S6_L002_R2_001.fastq.gz 3674883650 FASTQ R2_L002 unaligned CPTAC3 fe6554ca-64ab-4ad1-a3de-c87835c34fc0 c79a53ead4b89a08e305a34eb382f432 { 'aliquot_tag': 'ALQ_24cc1afa', 'gdc_sample_type': 'Primary Tumor' } +C3L-03266.RNA-Seq.genomic.T.hg38 C3L-03266 GBM RNA-Seq tumor CPT0189460009 517e37c3-64f8-40fa-8b6c-3c74e423ea1a.rna_seq.genomic.gdc_realn.bam 7498932136 BAM genomic harmonized CPTAC3 09ad5bf0-e972-4b4d-867d-f96dc9cad78d a8fe6a4ffac9ae5c25eb34c1e79d02d0 { 'aliquot_tag': 'ALQ_24cc1afa', 'gdc_sample_type': 'Primary Tumor' } +C3L-03266.RNA-Seq.R1_L002.T C3L-03266 GBM RNA-Seq tumor CPT0189460009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACTTGA_S6_L002_R1_001.fastq.gz 3455029772 FASTQ R1_L002 unaligned CPTAC3 f21763d0-27de-4280-9b52-0ed9b74804de 0e8a645812512dff3163c67e87db8a32 { 'aliquot_tag': 'ALQ_24cc1afa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-03266.RNA-Seq.R2_L002.T C3L-03266 GBM RNA-Seq tumor CPT0189460009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACTTGA_S6_L002_R2_001.fastq.gz 3674883650 FASTQ R2_L002 unaligned CPTAC3 fe6554ca-64ab-4ad1-a3de-c87835c34fc0 c79a53ead4b89a08e305a34eb382f432 { 'aliquot_tag': 'ALQ_24cc1afa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-03266.RNA-Seq.transcriptome.T.hg38 C3L-03266 GBM RNA-Seq tumor CPT0189460009 517e37c3-64f8-40fa-8b6c-3c74e423ea1a.rna_seq.transcriptome.gdc_realn.bam 8886524920 BAM transcriptome harmonized CPTAC3 f21395c4-457c-4058-b7fb-c2c6a0c9e89a 69e6a038deb23a81746d7e467692166d { 'aliquot_tag': 'ALQ_24cc1afa', 'gdc_sample_type': 'Primary Tumor' } C3L-03266.WGS.N C3L-03266 GBM WGS blood_normal CPT0190220002 CPT0190220002.WholeGenome.RP-1303.bam 60060309110 BAM aligned CPTAC3 016ad426-e103-4ec3-8a81-b6eab664922e ff6949a31114e58406b2facf331387dc { 'aliquot_tag': 'ALQ_c9f5c3e2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03266.WGS.N.hg38 C3L-03266 GBM WGS blood_normal CPT0190220002 8c46cc2e-aa9c-432b-9955-cfc461c71921_wgs_gdc_realn.bam 87485615811 BAM harmonized CPTAC3 f29969cc-8a9e-417b-b2fd-440773b088f9 20a34668abe6f8afe9810b3ac1ec5833 { 'aliquot_tag': 'ALQ_c9f5c3e2', 'gdc_sample_type': 'Blood Derived Normal' } @@ -12996,16 +13829,16 @@ C3L-03268.miRNA-Seq.A C3L-03268 LUAD miRNA-Seq tissue_normal CPT0249490009 19072 C3L-03268.miRNA-Seq.A.hg38 C3L-03268 LUAD miRNA-Seq tissue_normal CPT0249490009 7a72ba87-c92a-4af0-a444-8e816a8b55bd_mirnaseq_gdc_realn.bam 331123119 BAM harmonized CPTAC3 cfaf4e60-e05e-4345-8b22-ba6512e2d727 1f5f22c6e8eb0b9ddea31f954698f90b { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03268.miRNA-Seq.T C3L-03268 LUAD miRNA-Seq tumor CPT0249450009 190722_UNC31-K00269_0234_AH7VGTBBXY_GACGAC_S34_L004_R1_001.unaln.bam 238202438 BAM unaligned CPTAC3 803c52be-7c5b-497f-ad61-da31262dbf33 9be7994907c0e4182e9e4182d95f5316 { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor' } C3L-03268.miRNA-Seq.T.hg38 C3L-03268 LUAD miRNA-Seq tumor CPT0249450009 2c721980-9de0-47f6-9f2f-c39c8f7e8c0a_mirnaseq_gdc_realn.bam 268078730 BAM harmonized CPTAC3 629f7e40-efe1-4e5d-b32b-7501593bd85b e124e24b12e8a138c39a1601b44db66a { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor' } -C3L-03268.RNA-Seq.chimeric.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 1e8465cf-ecde-439f-aa78-ffc9dae9f664.rna_seq.chimeric.gdc_realn.bam 43298476 BAM chimeric harmonized CPTAC3 d9d2154e-a614-47f6-9634-4e48007cb066 852c68ea92cfeae9a0e0bdaeaaa3b3af { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03268.RNA-Seq.chimeric.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 874f5520-dfd7-4c20-acb1-27f33075b9c9.rna_seq.chimeric.gdc_realn.bam 37147478 BAM chimeric harmonized CPTAC3 325b6d38-a686-4e5a-805a-99e66fda1ddb 09c01f67d73550f529c0b1c152737dda { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor' } -C3L-03268.RNA-Seq.genomic.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 1e8465cf-ecde-439f-aa78-ffc9dae9f664.rna_seq.genomic.gdc_realn.bam 10513946954 BAM genomic harmonized CPTAC3 69048054-195e-4472-b5df-c85f6b053dcd 6d3cee7ddc292c516bae003a7313b2f4 { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03268.RNA-Seq.genomic.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 874f5520-dfd7-4c20-acb1-27f33075b9c9.rna_seq.genomic.gdc_realn.bam 10313638486 BAM genomic harmonized CPTAC3 9379cfca-898f-43c4-84ca-aa3e35d30acb 47bf55db3a22d29b95df5a8e0ccb6797 { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor' } -C3L-03268.RNA-Seq.R1_L004.T C3L-03268 LUAD RNA-Seq tumor CPT0249450009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATGGAT-CTGTATTA_S15_L004_R1_001.fastq.gz 4220987078 FASTQ R1_L004 unaligned CPTAC3 322fd04f-febc-43d3-bbb8-ddaf962a08d6 6c5d5546eb633300006b8a71dce89c96 { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor' } -C3L-03268.RNA-Seq.R1_L005.A C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 190607_UNC32-K00270_0179_BH75W2BBXY_GCTTGTCA-GAACATAC_S18_L005_R1_001.fastq.gz 3624790822 FASTQ R1_L005 unaligned CPTAC3 3d49d2b1-e748-45eb-a127-3462adc294de 48d75a12fdcee57407a44af4a6bd206d { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03268.RNA-Seq.R2_L004.T C3L-03268 LUAD RNA-Seq tumor CPT0249450009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATGGAT-CTGTATTA_S15_L004_R2_001.fastq.gz 4806780620 FASTQ R2_L004 unaligned CPTAC3 ea939946-448c-4142-a18c-ac4b62b5ff82 6d28572206285c1c0472b1f009bd9a38 { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor' } -C3L-03268.RNA-Seq.R2_L005.A C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 190607_UNC32-K00270_0179_BH75W2BBXY_GCTTGTCA-GAACATAC_S18_L005_R2_001.fastq.gz 4059327152 FASTQ R2_L005 unaligned CPTAC3 f3763de5-eccb-463a-9975-dc31fcd7b991 b5908f14eb2652a99de40eca90cf6b17 { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03268.RNA-Seq.transcriptome.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 1e8465cf-ecde-439f-aa78-ffc9dae9f664.rna_seq.transcriptome.gdc_realn.bam 7074536640 BAM transcriptome harmonized CPTAC3 9b434bea-0431-4ea8-b904-19a660ef7fe3 2c0cc24be9716ffded95ecd262c562a2 { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03268.RNA-Seq.transcriptome.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 874f5520-dfd7-4c20-acb1-27f33075b9c9.rna_seq.transcriptome.gdc_realn.bam 8654402505 BAM transcriptome harmonized CPTAC3 cd95e540-9c77-478a-bc29-58ef08c50c20 1985e0cca95f7dfa77c4e1b940076f88 { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor' } +C3L-03268.RNA-Seq.chimeric.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 210aec05-601a-46ef-84a6-97c7872037bf.rna_seq.chimeric.gdc_realn.bam 43283306 BAM chimeric harmonized CPTAC3 ebb44f95-2ee2-4125-92dd-8e15a3236391 22bcf36e707bfed76b74a01f8f6c8c5c { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03268.RNA-Seq.chimeric.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 9c62bb7a-07b6-4b17-b887-a5d3e3df0e34.rna_seq.chimeric.gdc_realn.bam 37156045 BAM chimeric harmonized CPTAC3 972f1eeb-6753-4a76-addc-2cb08dd41f17 f36b925149dbd396e64e3cb5693d306a { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor' } +C3L-03268.RNA-Seq.genomic.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 210aec05-601a-46ef-84a6-97c7872037bf.rna_seq.genomic.gdc_realn.bam 10514093419 BAM genomic harmonized CPTAC3 8b0f2a2b-9330-45db-b290-6f4d6ef114d7 9586e4206f64902b8f1bb940ac0b279b { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03268.RNA-Seq.genomic.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 9c62bb7a-07b6-4b17-b887-a5d3e3df0e34.rna_seq.genomic.gdc_realn.bam 10314894049 BAM genomic harmonized CPTAC3 b566a24c-75b7-4701-96cb-3006221e41bc 51a3709fd9d8b0cbd7893f6d6af40b6a { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor' } +C3L-03268.RNA-Seq.R1_L004.T C3L-03268 LUAD RNA-Seq tumor CPT0249450009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATGGAT-CTGTATTA_S15_L004_R1_001.fastq.gz 4220987078 FASTQ R1_L004 unaligned CPTAC3 322fd04f-febc-43d3-bbb8-ddaf962a08d6 6c5d5546eb633300006b8a71dce89c96 { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-03268.RNA-Seq.R1_L005.A C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 190607_UNC32-K00270_0179_BH75W2BBXY_GCTTGTCA-GAACATAC_S18_L005_R1_001.fastq.gz 3624790822 FASTQ R1_L005 unaligned CPTAC3 3d49d2b1-e748-45eb-a127-3462adc294de 48d75a12fdcee57407a44af4a6bd206d { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-03268.RNA-Seq.R2_L004.T C3L-03268 LUAD RNA-Seq tumor CPT0249450009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATGGAT-CTGTATTA_S15_L004_R2_001.fastq.gz 4806780620 FASTQ R2_L004 unaligned CPTAC3 ea939946-448c-4142-a18c-ac4b62b5ff82 6d28572206285c1c0472b1f009bd9a38 { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-03268.RNA-Seq.R2_L005.A C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 190607_UNC32-K00270_0179_BH75W2BBXY_GCTTGTCA-GAACATAC_S18_L005_R2_001.fastq.gz 4059327152 FASTQ R2_L005 unaligned CPTAC3 f3763de5-eccb-463a-9975-dc31fcd7b991 b5908f14eb2652a99de40eca90cf6b17 { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-03268.RNA-Seq.transcriptome.A.hg38 C3L-03268 LUAD RNA-Seq tissue_normal CPT0249490009 210aec05-601a-46ef-84a6-97c7872037bf.rna_seq.transcriptome.gdc_realn.bam 7971897414 BAM transcriptome harmonized CPTAC3 09d693f2-5174-4d0c-ba5e-40a1f0dd2815 ef6958aaa78c9499b177998a820d0070 { 'aliquot_tag': 'ALQ_c8bea4a1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03268.RNA-Seq.transcriptome.T.hg38 C3L-03268 LUAD RNA-Seq tumor CPT0249450009 9c62bb7a-07b6-4b17-b887-a5d3e3df0e34.rna_seq.transcriptome.gdc_realn.bam 9730214610 BAM transcriptome harmonized CPTAC3 ec4d94e5-537e-472f-9237-1f1e7340ec46 fda8363edf8da2c5dd6db670bc883524 { 'aliquot_tag': 'ALQ_d4e49a0', 'gdc_sample_type': 'Primary Tumor' } C3L-03268.WGS.N C3L-03268 LUAD WGS blood_normal CPT0240420002 CPT0240420002.WholeGenome.RP-1303.bam 64284532344 BAM aligned CPTAC3 1cf2b976-9621-453b-b7d8-65c3f4517e71 7f2d624dea87074f8a9d89280e20a69b { 'aliquot_tag': 'ALQ_bd2409eb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03268.WGS.N.hg38 C3L-03268 LUAD WGS blood_normal CPT0240420002 d4a11072-a2c7-40c4-a547-6f29bd97e7d7_wgs_gdc_realn.bam 94667130219 BAM harmonized CPTAC3 14553bfe-ad05-4a7f-a759-6ea4eca5e83e 176a68fec0cf8fcb5cace076a7520d18 { 'aliquot_tag': 'ALQ_bd2409eb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03268.WGS.T C3L-03268 LUAD WGS tumor CPT0249450006 CPT0249450006.WholeGenome.RP-1303.bam 67269590278 BAM aligned CPTAC3 d178848d-fefc-4635-b806-06c2136690f2 e17faf287efdd85dbcfe1cc48e1c1bfc { 'aliquot_tag': 'ALQ_9df15431', 'gdc_sample_type': 'Primary Tumor' } @@ -13024,16 +13857,16 @@ C3L-03271.miRNA-Seq.A C3L-03271 LUAD miRNA-Seq tissue_normal CPT0225280007 19072 C3L-03271.miRNA-Seq.A.hg38 C3L-03271 LUAD miRNA-Seq tissue_normal CPT0225280007 0914f7dd-7139-47c2-892b-43d6501d4f17_mirnaseq_gdc_realn.bam 331571692 BAM harmonized CPTAC3 8c783aee-8722-4ece-afe5-fcf30530c42a a0aa56e9f6ca24018a7abe53ec238e1f { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03271.miRNA-Seq.T C3L-03271 LUAD miRNA-Seq tumor CPT0225190010 190722_UNC31-K00269_0234_AH7VGTBBXY_CAGGCG_S27_L004_R1_001.unaln.bam 151621433 BAM unaligned CPTAC3 b4d1016f-1e1c-4e7d-95c1-5a56ba140e9f 6c6d1fc51070940b370355e76d9e7a8b { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor' } C3L-03271.miRNA-Seq.T.hg38 C3L-03271 LUAD miRNA-Seq tumor CPT0225190010 e7773cfa-65bc-4176-9d4f-e1087291aca2_mirnaseq_gdc_realn.bam 169617939 BAM harmonized CPTAC3 3753a559-a062-4365-854c-8e195e0b14c3 c706a2626255c38a8e49e3919f0b78ab { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor' } -C3L-03271.RNA-Seq.chimeric.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 faa7261b-69ad-4717-9273-2c0bbdb6b233.rna_seq.chimeric.gdc_realn.bam 37257258 BAM chimeric harmonized CPTAC3 4ff5ee7a-90b6-4242-9ffa-24bfe80b1ff7 93781f0bc0c7eafd5a4f259e539caa73 { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03271.RNA-Seq.chimeric.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 5037a994-b298-430c-b160-c856376b1d50.rna_seq.chimeric.gdc_realn.bam 30873108 BAM chimeric harmonized CPTAC3 daa0a051-b11d-422f-b998-0265610bf5f4 4e75e4b107ded9e80d490530a65ac9f5 { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor' } -C3L-03271.RNA-Seq.genomic.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 faa7261b-69ad-4717-9273-2c0bbdb6b233.rna_seq.genomic.gdc_realn.bam 14419371701 BAM genomic harmonized CPTAC3 58736600-3a84-4ee4-9d0f-da2880c03819 e61d9fda64163408adf8587b147c146f { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03271.RNA-Seq.genomic.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 5037a994-b298-430c-b160-c856376b1d50.rna_seq.genomic.gdc_realn.bam 12668456806 BAM genomic harmonized CPTAC3 c6a72de1-96b5-412f-8cf4-05629cac20ca 0233cae7f1f637f8ec8caeb061bee0a3 { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor' } -C3L-03271.RNA-Seq.R1_L006.T C3L-03271 LUAD RNA-Seq tumor CPT0225190010 190604_UNC32-K00270_0177_AH7F5VBBXY_TACCGAGG-CCTGAACT_S23_L006_R1_001.fastq.gz 4140273095 FASTQ R1_L006 unaligned CPTAC3 a27e5b8d-8802-4454-b093-45e318d4f588 1988fb0a38b1c3f7408f259d8f579466 { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor' } -C3L-03271.RNA-Seq.R1_L007.A C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 190607_UNC32-K00270_0178_AH773TBBXY_TTCCTGTT-AGTATCTT_S25_L007_R1_001.fastq.gz 5350308225 FASTQ R1_L007 unaligned CPTAC3 71251649-e452-4738-98ec-25ff0022037c 04ad0e6fa307c15e041b6aa210ed275e { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03271.RNA-Seq.R2_L006.T C3L-03271 LUAD RNA-Seq tumor CPT0225190010 190604_UNC32-K00270_0177_AH7F5VBBXY_TACCGAGG-CCTGAACT_S23_L006_R2_001.fastq.gz 4770824757 FASTQ R2_L006 unaligned CPTAC3 2d8514dd-2d1b-415c-8714-c0dc66a7d707 3596eb6a2969f74de8d4fd8d10aa10a3 { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor' } -C3L-03271.RNA-Seq.R2_L007.A C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 190607_UNC32-K00270_0178_AH773TBBXY_TTCCTGTT-AGTATCTT_S25_L007_R2_001.fastq.gz 5619188959 FASTQ R2_L007 unaligned CPTAC3 16276d67-c5b4-4b5f-b4d8-8c70205baf09 71923716114a7f6d4c5a89e5798a0e49 { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03271.RNA-Seq.transcriptome.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 faa7261b-69ad-4717-9273-2c0bbdb6b233.rna_seq.transcriptome.gdc_realn.bam 10581914722 BAM transcriptome harmonized CPTAC3 97795773-3a0d-467a-ab6e-652c89b88549 1671ece5d4f4caadb182d0c80e3cf4f4 { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03271.RNA-Seq.transcriptome.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 5037a994-b298-430c-b160-c856376b1d50.rna_seq.transcriptome.gdc_realn.bam 8637814619 BAM transcriptome harmonized CPTAC3 07f9cea6-8b64-409e-903e-66e096773464 a6f6a73726ed3789f0b24006addba36a { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor' } +C3L-03271.RNA-Seq.chimeric.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 1a0bc239-cd1c-497f-a31c-5676d3322d71.rna_seq.chimeric.gdc_realn.bam 37235014 BAM chimeric harmonized CPTAC3 cdc3b4bc-f8e1-48d1-80a2-976e340fca85 d87ae0de23ff81958a668b10736653d3 { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03271.RNA-Seq.chimeric.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 48f19696-2e50-450c-93f3-9d1e1bf43591.rna_seq.chimeric.gdc_realn.bam 30879641 BAM chimeric harmonized CPTAC3 56d72691-8473-4974-a69d-1b8f94812768 8456bc6dfab9be5c3b5ce70221373343 { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor' } +C3L-03271.RNA-Seq.genomic.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 1a0bc239-cd1c-497f-a31c-5676d3322d71.rna_seq.genomic.gdc_realn.bam 14420673516 BAM genomic harmonized CPTAC3 3f19e45e-62f4-4dcb-a02e-81558d042a62 d4a1ab837a33499db84d8e206649e18d { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03271.RNA-Seq.genomic.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 48f19696-2e50-450c-93f3-9d1e1bf43591.rna_seq.genomic.gdc_realn.bam 12669772118 BAM genomic harmonized CPTAC3 ad9d9285-cbf7-4b24-802e-25a9c2f38a96 65ac7927603a195c5239338bfef80392 { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor' } +C3L-03271.RNA-Seq.R1_L006.T C3L-03271 LUAD RNA-Seq tumor CPT0225190010 190604_UNC32-K00270_0177_AH7F5VBBXY_TACCGAGG-CCTGAACT_S23_L006_R1_001.fastq.gz 4140273095 FASTQ R1_L006 unaligned CPTAC3 a27e5b8d-8802-4454-b093-45e318d4f588 1988fb0a38b1c3f7408f259d8f579466 { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03271.RNA-Seq.R1_L007.A C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 190607_UNC32-K00270_0178_AH773TBBXY_TTCCTGTT-AGTATCTT_S25_L007_R1_001.fastq.gz 5350308225 FASTQ R1_L007 unaligned CPTAC3 71251649-e452-4738-98ec-25ff0022037c 04ad0e6fa307c15e041b6aa210ed275e { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-03271.RNA-Seq.R2_L006.T C3L-03271 LUAD RNA-Seq tumor CPT0225190010 190604_UNC32-K00270_0177_AH7F5VBBXY_TACCGAGG-CCTGAACT_S23_L006_R2_001.fastq.gz 4770824757 FASTQ R2_L006 unaligned CPTAC3 2d8514dd-2d1b-415c-8714-c0dc66a7d707 3596eb6a2969f74de8d4fd8d10aa10a3 { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-03271.RNA-Seq.R2_L007.A C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 190607_UNC32-K00270_0178_AH773TBBXY_TTCCTGTT-AGTATCTT_S25_L007_R2_001.fastq.gz 5619188959 FASTQ R2_L007 unaligned CPTAC3 16276d67-c5b4-4b5f-b4d8-8c70205baf09 71923716114a7f6d4c5a89e5798a0e49 { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-03271.RNA-Seq.transcriptome.A.hg38 C3L-03271 LUAD RNA-Seq tissue_normal CPT0225280007 1a0bc239-cd1c-497f-a31c-5676d3322d71.rna_seq.transcriptome.gdc_realn.bam 11940946908 BAM transcriptome harmonized CPTAC3 1ed2773a-d33d-4bc1-92ac-e1a85cd5ab97 0f1184362679e2531d16aaa5e6e7e805 { 'aliquot_tag': 'ALQ_c5f020f8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03271.RNA-Seq.transcriptome.T.hg38 C3L-03271 LUAD RNA-Seq tumor CPT0225190010 48f19696-2e50-450c-93f3-9d1e1bf43591.rna_seq.transcriptome.gdc_realn.bam 9807412864 BAM transcriptome harmonized CPTAC3 df6ad7fe-b1b1-4e9e-ae70-1364f3cbba2e d9610560d69ccbcf6578b470d0dad9eb { 'aliquot_tag': 'ALQ_f97bdf04', 'gdc_sample_type': 'Primary Tumor' } C3L-03271.WGS.N C3L-03271 LUAD WGS blood_normal CPT0226040002 CPT0226040002.WholeGenome.RP-1303.bam 56444883358 BAM aligned CPTAC3 38f3ed16-c0ad-45d4-ab38-7eafcec00789 2d8b9f9c3753f8721b39104c6c80d726 { 'aliquot_tag': 'ALQ_c4a82e0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03271.WGS.N.hg38 C3L-03271 LUAD WGS blood_normal CPT0226040002 561e422d-e4db-4213-8bde-505d3cf49cf7_wgs_gdc_realn.bam 84228170736 BAM harmonized CPTAC3 1699c142-456b-460d-8ae0-7c8eddbb1d4d e4006a6af60f7dbeb65dc325aefd1c3d { 'aliquot_tag': 'ALQ_c4a82e0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03271.WGS.T C3L-03271 LUAD WGS tumor CPT0225190007 CPT0225190007.WholeGenome.RP-1303.bam 53010533979 BAM aligned CPTAC3 9f195a04-4c8b-45dd-a0cd-e02ef49eaea7 820b1003d678cf2a7beff6e1d3b714a5 { 'aliquot_tag': 'ALQ_7e047be6', 'gdc_sample_type': 'Primary Tumor' } @@ -13054,12 +13887,12 @@ C3L-03272.miRNA-Seq.T C3L-03272 LSCC miRNA-Seq tumor CPT0225380009 190206_UNC31- C3L-03272.miRNA-Seq.T.hg38 C3L-03272 LSCC miRNA-Seq tumor CPT0225380009 6cf6e03d-a0c8-44e1-9042-818d91caaed7_mirnaseq_gdc_realn.bam 197771145 BAM harmonized CPTAC3 bd504555-de8d-4a88-b7c1-6c70ddc6b123 c2862a1d063bed9fce80514ad760b9ed { 'aliquot_tag': 'ALQ_e914de5a', 'gdc_sample_type': 'Primary Tumor' } C3L-03272.RNA-Seq.chimeric.A.hg38 C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 48d0c807-abc5-423f-859d-af4e893e8ad8.rna_seq.chimeric.gdc_realn.bam 253078786 BAM chimeric harmonized CPTAC3 d102c27e-1a15-4efd-b527-80034ed4432d bc03e81e9c1c08f3e18c2a410d038e12 { 'aliquot_tag': 'ALQ_76417933', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03272.RNA-Seq.chimeric.T.hg38 C3L-03272 LSCC RNA-Seq tumor CPT0225380009 e7415a78-c039-4048-9b4c-fdb07207de7c.rna_seq.chimeric.gdc_realn.bam 96330892 BAM chimeric harmonized CPTAC3 bd278d8e-2e0e-4388-8722-474eb7c4dda5 de811c8f30af530601552e289acb3237 { 'aliquot_tag': 'ALQ_e914de5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03272.RNA-Seq.genomic.A.hg38 C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 48d0c807-abc5-423f-859d-af4e893e8ad8.rna_seq.genomic.gdc_realn.bam 7316808543 BAM genomic harmonized CPTAC3 360766f9-77c1-4a71-8569-52e15f8c2745 b47d7a807936e0b7c534a0cd8b0aeaf0 { 'aliquot_tag': 'ALQ_76417933', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03272.RNA-Seq.genomic.T.hg38 C3L-03272 LSCC RNA-Seq tumor CPT0225380009 e7415a78-c039-4048-9b4c-fdb07207de7c.rna_seq.genomic.gdc_realn.bam 9362922043 BAM genomic harmonized CPTAC3 de21da25-ca36-45c8-a83e-c57f952fee32 169dad94e766237f7c313f3a7410591c { 'aliquot_tag': 'ALQ_e914de5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03272.RNA-Seq.R1_L002.A C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGGCC_S8_L002_R1_001.fastq.gz 3483728600 FASTQ R1_L002 unaligned CPTAC3 4c8a1673-4bc1-4b47-9166-27890c2664ea cd250600faf22515680e86a2881f33b4 { 'aliquot_tag': 'ALQ_76417933', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03272.RNA-Seq.R1_L006.T C3L-03272 LSCC RNA-Seq tumor CPT0225380009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTTCC_S21_L006_R1_001.fastq.gz 3938286963 FASTQ R1_L006 unaligned CPTAC3 ade6ad8e-5427-41bf-b2b3-338c7b40c786 1d7e4a316b51f94d0ed35c127234f248 { 'aliquot_tag': 'ALQ_e914de5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03272.RNA-Seq.R2_L002.A C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGGCC_S8_L002_R2_001.fastq.gz 3777452158 FASTQ R2_L002 unaligned CPTAC3 47bf26e4-b41b-40a3-b114-29cdb58d698b aaa8f081fe3230bde47305b42fb8bbe1 { 'aliquot_tag': 'ALQ_76417933', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03272.RNA-Seq.R2_L006.T C3L-03272 LSCC RNA-Seq tumor CPT0225380009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTTCC_S21_L006_R2_001.fastq.gz 4212220666 FASTQ R2_L006 unaligned CPTAC3 3f88a9da-1dcb-47f7-9081-5247432544a8 c53a54c435f41b3d87be9d1ec073d159 { 'aliquot_tag': 'ALQ_e914de5a', 'gdc_sample_type': 'Primary Tumor' } +C3L-03272.RNA-Seq.genomic.A.hg38 C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 48d0c807-abc5-423f-859d-af4e893e8ad8.rna_seq.genomic.gdc_realn.bam 7316808543 BAM genomic harmonized CPTAC3 aac736d7-660e-4eff-9147-ccb1222c0bdf b47d7a807936e0b7c534a0cd8b0aeaf0 { 'aliquot_tag': 'ALQ_76417933', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03272.RNA-Seq.genomic.T.hg38 C3L-03272 LSCC RNA-Seq tumor CPT0225380009 e7415a78-c039-4048-9b4c-fdb07207de7c.rna_seq.genomic.gdc_realn.bam 9362922043 BAM genomic harmonized CPTAC3 b5ec089e-37f6-422a-8074-5a61272ca003 169dad94e766237f7c313f3a7410591c { 'aliquot_tag': 'ALQ_e914de5a', 'gdc_sample_type': 'Primary Tumor' } +C3L-03272.RNA-Seq.R1_L002.A C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGGCC_S8_L002_R1_001.fastq.gz 3483728600 FASTQ R1_L002 unaligned CPTAC3 4c8a1673-4bc1-4b47-9166-27890c2664ea cd250600faf22515680e86a2881f33b4 { 'aliquot_tag': 'ALQ_76417933', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-03272.RNA-Seq.R1_L006.T C3L-03272 LSCC RNA-Seq tumor CPT0225380009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTTCC_S21_L006_R1_001.fastq.gz 3938286963 FASTQ R1_L006 unaligned CPTAC3 ade6ad8e-5427-41bf-b2b3-338c7b40c786 1d7e4a316b51f94d0ed35c127234f248 { 'aliquot_tag': 'ALQ_e914de5a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03272.RNA-Seq.R2_L002.A C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGGCC_S8_L002_R2_001.fastq.gz 3777452158 FASTQ R2_L002 unaligned CPTAC3 47bf26e4-b41b-40a3-b114-29cdb58d698b aaa8f081fe3230bde47305b42fb8bbe1 { 'aliquot_tag': 'ALQ_76417933', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-03272.RNA-Seq.R2_L006.T C3L-03272 LSCC RNA-Seq tumor CPT0225380009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTTCC_S21_L006_R2_001.fastq.gz 4212220666 FASTQ R2_L006 unaligned CPTAC3 3f88a9da-1dcb-47f7-9081-5247432544a8 c53a54c435f41b3d87be9d1ec073d159 { 'aliquot_tag': 'ALQ_e914de5a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-03272.RNA-Seq.transcriptome.A.hg38 C3L-03272 LSCC RNA-Seq tissue_normal CPT0225470009 48d0c807-abc5-423f-859d-af4e893e8ad8.rna_seq.transcriptome.gdc_realn.bam 8306796368 BAM transcriptome harmonized CPTAC3 2f1c6935-ca6d-492b-9156-36c00efcc1ec e658b79ea0ebf143f26ccbc21a8f78d1 { 'aliquot_tag': 'ALQ_76417933', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03272.RNA-Seq.transcriptome.T.hg38 C3L-03272 LSCC RNA-Seq tumor CPT0225380009 e7415a78-c039-4048-9b4c-fdb07207de7c.rna_seq.transcriptome.gdc_realn.bam 9175863567 BAM transcriptome harmonized CPTAC3 2a04871f-0c4f-40a8-bbe4-04e2598cad34 552373a2349e6e69f887eac30fcc71f6 { 'aliquot_tag': 'ALQ_e914de5a', 'gdc_sample_type': 'Primary Tumor' } C3L-03272.WGS.N C3L-03272 LSCC WGS blood_normal CPT0226050002 CPT0226050002.WholeGenome.RP-1303.bam 63386228227 BAM aligned CPTAC3 45d39836-6084-462c-9ba7-7b1430718e9f 1e531da9fda0a65fa924b8dd22387abb { 'aliquot_tag': 'ALQ_312aab50', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13072,56 +13905,74 @@ C3L-03272.WXS.N C3L-03272 LSCC WXS blood_normal CPT0226050002 CPT0226050002.Whol C3L-03272.WXS.N.hg38 C3L-03272 LSCC WXS blood_normal CPT0226050002 463e4a08-38ab-408f-ac18-8f6899380f8c_wxs_gdc_realn.bam 41000207872 BAM harmonized CPTAC3 baf9a640-5ccc-4af5-93b1-e0c0f3d51d97 98a48805103196244da62e5f7344276a { 'aliquot_tag': 'ALQ_312aab50', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03272.WXS.T C3L-03272 LSCC WXS tumor CPT0225380006 CPT0225380006.WholeExome.RP-1303.bam 17959482942 BAM aligned CPTAC3 a6d2bf7e-f2ed-40fa-b80f-53019e9ac4a7 0a15a2cda3703782c1fa88a7214c690e { 'aliquot_tag': 'ALQ_79abc3cb', 'gdc_sample_type': 'Primary Tumor' } C3L-03272.WXS.T.hg38 C3L-03272 LSCC WXS tumor CPT0225380006 8f3cb724-0fdf-4d28-ae78-bd024cc7ca04_wxs_gdc_realn.bam 25283322306 BAM harmonized CPTAC3 caaab6de-d522-4508-aca4-9451506e9692 2bc702bcdee2a92d91755b1f3c7cbf7c { 'aliquot_tag': 'ALQ_79abc3cb', 'gdc_sample_type': 'Primary Tumor' } +C3L-03303.MethArray.Green.Tpb C3L-03303 AML Methylation Array tumor_peripheral_blood CPT0414490002 205987780161_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 3c746d14-c96f-46b0-b8ec-7150a30f73b4 eca82677fb3d862fb645c6562e2b54a8 { 'aliquot_tag': 'ALQ_5416b07', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-03303.MethArray.Red.Tpb C3L-03303 AML Methylation Array tumor_peripheral_blood CPT0414490002 205987780161_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 57a15697-2ae0-4f35-b7ab-c6391e499a95 7e38a4f29a54c8886316aa4a8251f56f { 'aliquot_tag': 'ALQ_5416b07', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-03303.miRNA-Seq.Tpb C3L-03303 AML miRNA-Seq tumor_peripheral_blood CPT0414520002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTAGCT_S11_L003_R1_001.unaln.bam 282194409 BAM unaligned CPTAC3 6e805926-0975-4c86-ae8b-e4665e79954d a3272b032c3685d07cf5a1b23420ba24 { 'aliquot_tag': 'ALQ_b9cd89b3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-03303.RNA-Seq.R1_L008.Tpb C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 211207_UNC32-K00270_0306_BHMW5YBBXY_GAATGAGA-GAGGCATT_S31_L008_R1_001.fastq.gz 4200665380 FASTQ R1_L008 unaligned CPTAC3 50e07cc2-4c18-4b66-ad49-40c0ddb33156 b9d158f5e68292a564faf233b4f76051 { 'aliquot_tag': 'ALQ_b9cd89b3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-03303.RNA-Seq.R2_L008.Tpb C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 211207_UNC32-K00270_0306_BHMW5YBBXY_GAATGAGA-GAGGCATT_S31_L008_R2_001.fastq.gz 4733354512 FASTQ R2_L008 unaligned CPTAC3 676f819f-ab8a-4d67-b924-4ea85853f451 b2fc6c0ca1f4eb940fd6f169611e5085 { 'aliquot_tag': 'ALQ_b9cd89b3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-03303.miRNA-Seq.Tpb.hg38 C3L-03303 AML miRNA-Seq tumor_peripheral_blood CPT0414520002 757e7d74-2d01-43bf-8f38-d063afe5a8b9_mirnaseq_gdc_realn.bam 310143403 BAM harmonized CPTAC3 24b38240-fcf1-4c27-884e-0ca158e542a5 6dae08189d500d1a1cc967679f8930fc { 'aliquot_tag': 'ALQ_b9cd89b3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-03303.RNA-Seq.chimeric.Tpb.hg38 C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 22840a43-8bfa-4f29-a9c6-2221d9e381ea.rna_seq.chimeric.gdc_realn.bam 720730740 BAM chimeric harmonized CPTAC3 dfb307f3-ca94-4f41-b865-73d823cbb3ee 270e8ab24e9702f475cbe161e38ddc69 { 'aliquot_tag': 'ALQ_b9cd89b3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-03303.RNA-Seq.genomic.Tpb.hg38 C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 22840a43-8bfa-4f29-a9c6-2221d9e381ea.rna_seq.genomic.gdc_realn.bam 8926090323 BAM genomic harmonized CPTAC3 d4a4eecb-56a8-4c25-9d8b-6210069b382b 3ec8c52cbc385ff8e5d8a77626390051 { 'aliquot_tag': 'ALQ_b9cd89b3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-03303.RNA-Seq.R1_L008.Tpb C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 211207_UNC32-K00270_0306_BHMW5YBBXY_GAATGAGA-GAGGCATT_S31_L008_R1_001.fastq.gz 4200665380 FASTQ R1_L008 unaligned CPTAC3 50e07cc2-4c18-4b66-ad49-40c0ddb33156 b9d158f5e68292a564faf233b4f76051 { 'aliquot_tag': 'ALQ_b9cd89b3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L008' } +C3L-03303.RNA-Seq.R2_L008.Tpb C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 211207_UNC32-K00270_0306_BHMW5YBBXY_GAATGAGA-GAGGCATT_S31_L008_R2_001.fastq.gz 4733354512 FASTQ R2_L008 unaligned CPTAC3 676f819f-ab8a-4d67-b924-4ea85853f451 b2fc6c0ca1f4eb940fd6f169611e5085 { 'aliquot_tag': 'ALQ_b9cd89b3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L008' } +C3L-03303.RNA-Seq.transcriptome.Tpb.hg38 C3L-03303 AML RNA-Seq tumor_peripheral_blood CPT0414520002 22840a43-8bfa-4f29-a9c6-2221d9e381ea.rna_seq.transcriptome.gdc_realn.bam 9364830277 BAM transcriptome harmonized CPTAC3 0a642937-c5d7-4320-aed3-7a8db2d34f2c 2d40ed896698de8e3d98dba058416d26 { 'aliquot_tag': 'ALQ_b9cd89b3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-03303.WGS.Nbc C3L-03303 AML WGS buccal_normal CPT0414470001 CPT0414470001.WholeGenome.RP-2158.bam 37979169924 BAM aligned CPTAC3 6b894c3e-cf42-49f4-a10a-876d5e5f9aca 7b082a3f310c055bc77d8286d5a8c58b { 'aliquot_tag': 'ALQ_237884dc', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-03303.WGS.Nbc.hg38 C3L-03303 AML WGS buccal_normal CPT0414470001 60ad18a7-b6b0-4584-b7c8-9eb861605047_wgs_gdc_realn.bam 112880245115 BAM harmonized CPTAC3 5d5ffeab-8fde-4425-b4c2-709184c3574e 1f94d3e7b7422c98abe77f383df7bdad { 'aliquot_tag': 'ALQ_237884dc', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03303.WGS.Tpb C3L-03303 AML WGS tumor_peripheral_blood CPT0414490002 CPT0414490002.WholeGenome.RP-2158.bam 45890699294 BAM aligned CPTAC3 c26f61d4-c87f-48c3-bcfd-6fe29e929ef3 e5858cb207a1173ffe1d33afd2d6ee7d { 'aliquot_tag': 'ALQ_5416b07', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-03303.WGS.Tpb.hg38 C3L-03303 AML WGS tumor_peripheral_blood CPT0414490002 c5b83617-a80e-4728-90dc-840cc19cda6a_wgs_gdc_realn.bam 133305371881 BAM harmonized CPTAC3 941782bb-9b0c-49d8-9a3a-c0d6e4c95eb6 3ae224b734d259d6cede14bc5964c80d { 'aliquot_tag': 'ALQ_5416b07', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-03303.WXS.Nbc C3L-03303 AML WXS buccal_normal CPT0414470001 CPT0414470001.WholeExome.RP-1303.bam 25664195896 BAM aligned CPTAC3 9dc9d029-df01-42cc-8500-766140a152ab 0e4653625660ff13719309528373ab57 { 'aliquot_tag': 'ALQ_237884dc', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-03303.WXS.Nbc.hg38 C3L-03303 AML WXS buccal_normal CPT0414470001 60ad18a7-b6b0-4584-b7c8-9eb861605047_wxs_gdc_realn.bam 34925074666 BAM harmonized CPTAC3 709ebea2-6679-4120-bbc8-0f5a280cdb95 807ddedd9279fbd7aad4b25c7d88eb48 { 'aliquot_tag': 'ALQ_237884dc', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03303.WXS.Tpb C3L-03303 AML WXS tumor_peripheral_blood CPT0414490002 CPT0414490002.WholeExome.RP-1303.bam 24404684691 BAM aligned CPTAC3 26853a73-4452-4e19-957b-11d89263cd87 2d3222d682106f237398cc868bc91255 { 'aliquot_tag': 'ALQ_5416b07', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-03303.WXS.Tpb.hg38 C3L-03303 AML WXS tumor_peripheral_blood CPT0414490002 c5b83617-a80e-4728-90dc-840cc19cda6a_wxs_gdc_realn.bam 33925470072 BAM harmonized CPTAC3 44aaaeb7-0526-4976-b170-77b2b1f02b45 40ed2bd25a30535bdc471d69f5d02386 { 'aliquot_tag': 'ALQ_5416b07', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-03308.MethArray.Green.Tbm C3L-03308 AML Methylation Array tumor_bone_marrow CPT0201550002 203561450062_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0c11ab8a-4434-4fb3-ae62-f9b65ff88dbc f7c2642b13d9e6cba9527a1edde1f36f { 'aliquot_tag': 'ALQ_e6650310', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03308.MethArray.Red.Tbm C3L-03308 AML Methylation Array tumor_bone_marrow CPT0201550002 203561450062_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 8727e07e-dbe8-46b6-94bf-3a4b1b0733ea f595cb8f6676e90c3e960acd67bfd576 { 'aliquot_tag': 'ALQ_e6650310', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03308.miRNA-Seq.Tbm C3L-03308 AML miRNA-Seq tumor_bone_marrow CPT0201560002 190508_UNC31-K00269_0215_BH7FYKBBXY_CACCGG_S30_L002_R1_001.unaln.bam 135963073 BAM unaligned CPTAC3 4eee79eb-a538-454e-8c77-f02952673c81 d624a64c348db950bd12aad76a8bfd13 { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03308.miRNA-Seq.Tbm.hg38 C3L-03308 AML miRNA-Seq tumor_bone_marrow CPT0201560002 b9d486cc-3fc5-4127-a3d6-ea2d68f0dc26_mirnaseq_gdc_realn.bam 150552262 BAM harmonized CPTAC3 e89d846c-336b-4890-8163-273e0fe05b81 b09c01ce756f891be3e837348a80cf2a { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03308.RNA-Seq.chimeric.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 3f7b9d06-1830-4f4d-b6f7-694d5eafd773.rna_seq.chimeric.gdc_realn.bam 42611785 BAM chimeric harmonized CPTAC3 bb8f1d72-0007-4742-b09e-5c0f67eb3cc7 c54fd81ef073831f9f18cde553de308d { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03308.RNA-Seq.genomic.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 3f7b9d06-1830-4f4d-b6f7-694d5eafd773.rna_seq.genomic.gdc_realn.bam 8652036966 BAM genomic harmonized CPTAC3 6b38605b-6279-4e98-9aeb-36431f2b75ee 2f3debb5681cd8ba0a8dc9e231404fc0 { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03308.RNA-Seq.R1_L007.Tbm C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L007_R1_001.fastq.gz 4245443481 FASTQ R1_L007 unaligned CPTAC3 0e16aef5-04b8-4503-a905-e437485f08fa d408e26b84bd69e6ee2a63777abdb225 { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03308.RNA-Seq.R2_L007.Tbm C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L007_R2_001.fastq.gz 4634091106 FASTQ R2_L007 unaligned CPTAC3 67adf4d2-b1a4-45a3-b423-04aeeff6e2b4 7f8beacbba61c981e89afef002e592d4 { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03308.RNA-Seq.transcriptome.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 3f7b9d06-1830-4f4d-b6f7-694d5eafd773.rna_seq.transcriptome.gdc_realn.bam 8465107529 BAM transcriptome harmonized CPTAC3 345baa8a-5326-4995-bab4-93fee54021dd d472042b1b97a247890df0774679956c { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03308.RNA-Seq.chimeric.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 02305abc-8083-4f64-9f5f-c73ea7305c38.rna_seq.chimeric.gdc_realn.bam 42592438 BAM chimeric harmonized CPTAC3 3a7fc045-c50c-4d21-a8c8-59098d75b815 5e7585e38d08c0246ce434ab1bc839a6 { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03308.RNA-Seq.genomic.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 02305abc-8083-4f64-9f5f-c73ea7305c38.rna_seq.genomic.gdc_realn.bam 8650664066 BAM genomic harmonized CPTAC3 b4fc4964-447d-4c92-b223-7b4122492ca9 35d29621034e6ce9d13ea1f7bd18b1dc { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03308.RNA-Seq.R1_L007.Tbm C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L007_R1_001.fastq.gz 4245443481 FASTQ R1_L007 unaligned CPTAC3 0e16aef5-04b8-4503-a905-e437485f08fa d408e26b84bd69e6ee2a63777abdb225 { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-03308.RNA-Seq.R2_L007.Tbm C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L007_R2_001.fastq.gz 4634091106 FASTQ R2_L007 unaligned CPTAC3 67adf4d2-b1a4-45a3-b423-04aeeff6e2b4 7f8beacbba61c981e89afef002e592d4 { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-03308.RNA-Seq.transcriptome.Tbm.hg38 C3L-03308 AML RNA-Seq tumor_bone_marrow CPT0201560002 02305abc-8083-4f64-9f5f-c73ea7305c38.rna_seq.transcriptome.gdc_realn.bam 9642603748 BAM transcriptome harmonized CPTAC3 5fb87a64-20bb-419f-b162-940eb4768e62 06ff47cf2c379faca727a6246dd0cf82 { 'aliquot_tag': 'ALQ_a1c579c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03308.WGS.Nbc C3L-03308 AML WGS buccal_normal CPT0201630002_1 CPT0201630002_1.WholeGenome.RP-1303.bam 68138136147 BAM aligned CPTAC3 bc8e886d-54bf-4641-accb-ebbf1ad63d9c 807e2c69cd4858371a6492c2c238e589 { 'aliquot_tag': 'ALQ_13b0c409', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03308.WGS.Nbc C3L-03308 AML WGS buccal_normal CPT0201630002 CPT0201630002.WholeGenome.RP-1303.bam 24596099382 BAM aligned CPTAC3 85acc293-6c11-497e-8049-76327f5ec0b0 e0bb0b766ab2ef44625e416031dd9864 { 'aliquot_tag': 'ALQ_efb1841e', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03308.WGS.Nbc.hg38 C3L-03308 AML WGS buccal_normal CPT0201630002 d3e20335-9964-459f-b475-7572352452cc_wgs_gdc_realn.bam 33707667964 BAM harmonized CPTAC3 443cebb5-a542-4866-9e67-df805b839012 45247c1120bcbd60c050145d4841a1bf { 'aliquot_tag': 'ALQ_efb1841e', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-03308.WGS.Tbm C3L-03308 AML WGS tumor_bone_marrow CPT0201550002_1 CPT0201550002_1.WholeGenome.RP-1303.bam 80526632719 BAM aligned CPTAC3 45ce3ee1-1993-4b8b-a694-4c00f90d8c79 fd0e933949c6bc9b1f300317268d9e31 { 'aliquot_tag': 'ALQ_feeff6d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03308.WGS.Tbm C3L-03308 AML WGS tumor_bone_marrow CPT0201550002 CPT0201550002.WholeGenome.RP-1303.bam 23177226613 BAM aligned CPTAC3 831dd319-1f30-4547-b465-65f33299a36c 7ed4ffb7d9bb11d532084d0efeaf558c { 'aliquot_tag': 'ALQ_e6650310', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03308.WGS.Tbm.hg38 C3L-03308 AML WGS tumor_bone_marrow CPT0201550002 1489dd25-8419-4035-b058-cbd0c1d93caf_wgs_gdc_realn.bam 32052472043 BAM harmonized CPTAC3 0853efaa-8886-4b5c-96ce-547b63abbc8f 2b6f623f6d8a4f0da4fa1ec56d040503 { 'aliquot_tag': 'ALQ_e6650310', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03308.WXS.Nbc C3L-03308 AML WXS buccal_normal CPT0201630002 CPT0201630002.WholeExome.RP-1303.bam 24596099450 BAM aligned CPTAC3 5c350146-7466-48a4-949f-f570df1aa3e1 1888a9762a880130611a0180727800d1 { 'aliquot_tag': 'ALQ_efb1841e', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03308.WXS.Nbc.hg38 C3L-03308 AML WXS buccal_normal CPT0201630002 d3e20335-9964-459f-b475-7572352452cc_wxs_gdc_realn.bam 33863986000 BAM harmonized CPTAC3 9ea0ec47-41c9-4b2e-badb-ccfd4979751a 54d599e0a52fac7f3ba86f66a57866be { 'aliquot_tag': 'ALQ_efb1841e', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03308.WXS.Tbm C3L-03308 AML WXS tumor_bone_marrow CPT0201550002 CPT0201550002.WholeExome.RP-1303.bam 23177226677 BAM aligned CPTAC3 89398d58-6aff-4b44-aee1-b4a1be711054 8a7eae1f421b9e4cc549887e7d14af57 { 'aliquot_tag': 'ALQ_e6650310', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03308.WXS.Tbm.hg38 C3L-03308 AML WXS tumor_bone_marrow CPT0201550002 1489dd25-8419-4035-b058-cbd0c1d93caf_wxs_gdc_realn.bam 32380906747 BAM harmonized CPTAC3 0d6b19e7-cafc-43e4-9401-37a8da579764 6f15826e0d25dcf5b08ceabcd7b20ae3 { 'aliquot_tag': 'ALQ_e6650310', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03348.ANN_98be90a2.RNA-Seq.chimeric.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 48c79716-77e7-4365-9f81-265bf83ad011.rna_seq.chimeric.gdc_realn.bam 314158961 BAM chimeric harmonized CPTAC3 6014ae35-55e2-4c3f-973d-d17a4cea98c3 21f85a829fa1cb4bc58dc16ba2545aaf { 'aliquot_tag': 'ANN_98be90a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03348.ANN_98be90a2.RNA-Seq.genomic.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 48c79716-77e7-4365-9f81-265bf83ad011.rna_seq.genomic.gdc_realn.bam 9675219375 BAM genomic harmonized CPTAC3 4ece67bd-f47d-4477-9b10-4b71a118ce08 1853730af00f26fc3ad67b484faaa976 { 'aliquot_tag': 'ANN_98be90a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03348.ANN_98be90a2.RNA-Seq.R1_L007.T C3L-03348 PDA RNA-Seq tumor CPT0167050031 200807_UNC32-K00270_0255_AHHY2WBBXY_ACTCGTGT-ATTGGAAC_S8_L007_R1_001.fastq.gz 4346927555 FASTQ R1_L007 unaligned CPTAC3 cb4f0584-8ef0-4ed0-b10c-9b7e00aab287 27b9d71bb74d9cc28ef112766a28bf50 { 'aliquot_tag': 'ANN_98be90a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03348.ANN_98be90a2.RNA-Seq.R2_L007.T C3L-03348 PDA RNA-Seq tumor CPT0167050031 200807_UNC32-K00270_0255_AHHY2WBBXY_ACTCGTGT-ATTGGAAC_S8_L007_R2_001.fastq.gz 4807680903 FASTQ R2_L007 unaligned CPTAC3 39cef4d2-3d3c-4e64-b7c0-2ee3c22a2606 9defce0f036eacb880d54011a6c6f899 { 'aliquot_tag': 'ANN_98be90a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03348.ANN_98be90a2.RNA-Seq.transcriptome.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 48c79716-77e7-4365-9f81-265bf83ad011.rna_seq.transcriptome.gdc_realn.bam 10736250550 BAM transcriptome harmonized CPTAC3 6a3901de-4475-4068-8abd-87f64529efce 33353056fdd2ffaede17f90c23d858aa { 'aliquot_tag': 'ANN_98be90a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-03348.ANN_98be90a2.RNA-Seq.chimeric.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 811bf653-3996-43ce-bc3b-bcdc9a2030ac.rna_seq.chimeric.gdc_realn.bam 314214514 BAM chimeric harmonized CPTAC3 6b6fb99f-3474-4615-b5f2-e3f4b5e55033 a73512ee60bff2b82e5beefb3871d4bf { 'aliquot_tag': 'ANN_98be90a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-03348.ANN_98be90a2.RNA-Seq.genomic.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 811bf653-3996-43ce-bc3b-bcdc9a2030ac.rna_seq.genomic.gdc_realn.bam 9687156277 BAM genomic harmonized CPTAC3 dab4d8ce-dd55-4677-afe7-0027144af27f 0d3919e8c8865e726a8cb39a89614577 { 'aliquot_tag': 'ANN_98be90a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-03348.ANN_98be90a2.RNA-Seq.R1_L007.T C3L-03348 PDA RNA-Seq tumor CPT0167050031 200807_UNC32-K00270_0255_AHHY2WBBXY_ACTCGTGT-ATTGGAAC_S8_L007_R1_001.fastq.gz 4346927555 FASTQ R1_L007 unaligned CPTAC3 cb4f0584-8ef0-4ed0-b10c-9b7e00aab287 27b9d71bb74d9cc28ef112766a28bf50 { 'aliquot_tag': 'ANN_98be90a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L007' } +C3L-03348.ANN_98be90a2.RNA-Seq.R2_L007.T C3L-03348 PDA RNA-Seq tumor CPT0167050031 200807_UNC32-K00270_0255_AHHY2WBBXY_ACTCGTGT-ATTGGAAC_S8_L007_R2_001.fastq.gz 4807680903 FASTQ R2_L007 unaligned CPTAC3 39cef4d2-3d3c-4e64-b7c0-2ee3c22a2606 9defce0f036eacb880d54011a6c6f899 { 'aliquot_tag': 'ANN_98be90a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L007' } +C3L-03348.ANN_98be90a2.RNA-Seq.transcriptome.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050031 811bf653-3996-43ce-bc3b-bcdc9a2030ac.rna_seq.transcriptome.gdc_realn.bam 12188193584 BAM transcriptome harmonized CPTAC3 9d3c5011-07c0-4bd0-b6d4-c267b3bd54b6 351c275d0c26486d943f67ca0e86dafe { 'aliquot_tag': 'ANN_98be90a2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-03348.DUP_4617bbc8.RNA-Seq.chimeric.A.hg38 C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 fded204a-9681-47d2-bf7a-389d4469e036.rna_seq.chimeric.gdc_realn.bam 30087846 BAM chimeric harmonized CPTAC3 aaefad92-577e-43de-ab97-ac266ef1a04d 2f790faa1e970666f2779c7d645b398d { 'aliquot_tag': 'DUP_4617bbc8', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-03348.DUP_4617bbc8.RNA-Seq.genomic.A.hg38 C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 fded204a-9681-47d2-bf7a-389d4469e036.rna_seq.genomic.gdc_realn.bam 10189903240 BAM genomic harmonized CPTAC3 76bfe873-357b-4979-893d-a1b70718f0e2 4fa177ead115afdb1f61b53cddfdf566 { 'aliquot_tag': 'DUP_4617bbc8', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-03348.DUP_4617bbc8.RNA-Seq.R1_L001.A C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATCCACTG-AGGTGCGT_S1_L001_R1_001.fastq.gz 3568113260 FASTQ R1_L001 unaligned CPTAC3 12e19f35-3916-421f-bfe4-db8e45c480cc aa30e5444d6bacf1b607a28852a8f28e { 'aliquot_tag': 'DUP_4617bbc8', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L001' } +C3L-03348.DUP_4617bbc8.RNA-Seq.R2_L001.A C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATCCACTG-AGGTGCGT_S1_L001_R2_001.fastq.gz 3989549862 FASTQ R2_L001 unaligned CPTAC3 0c7bd6f6-18ea-46d7-9aaf-49c340317959 6fd92c331911070fd11ef1d3482449cc { 'aliquot_tag': 'DUP_4617bbc8', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L001' } +C3L-03348.DUP_4617bbc8.RNA-Seq.transcriptome.A.hg38 C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 fded204a-9681-47d2-bf7a-389d4469e036.rna_seq.transcriptome.gdc_realn.bam 9036536267 BAM transcriptome harmonized CPTAC3 e677e8ed-2640-4c44-9181-026a5026fb36 9197c5e3271667baf3223b98c28dac01 { 'aliquot_tag': 'DUP_4617bbc8', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3L-03348.DUP_505ac1bb.WXS.N C3L-03348 PDA WXS blood_normal CPT0167070002 CPT0167070002.WholeExome.RP-1303.bam 42037102862 BAM aligned CPTAC3 176e20b6-b16a-497e-b32c-1154a654b0b7 8ae0ca31e853bfba68491662cbf26235 { 'aliquot_tag': 'DUP_505ac1bb', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03348.DUP_505ac1bb.WXS.N.hg38 C3L-03348 PDA WXS blood_normal CPT0167070002 6d3fd32e-c0cb-4a4f-818b-b3d74b39567f_wxs_gdc_realn.bam 58398956401 BAM harmonized CPTAC3 b3a30b22-91ff-4ed5-a5f4-06a07d5353bc f343803c11ac5c4b12c44223f701b7a5 { 'aliquot_tag': 'DUP_505ac1bb', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03348.DUP_76b0f18e.WXS.T C3L-03348 PDA WXS tumor CPT0167050033 CPT0167050033.WholeExome.RP-1303.bam 23213012681 BAM aligned CPTAC3 4839a720-851b-4bfe-bd3f-a1e5f4ee78ef 6ee483cdcd638e6a4d1c26a12623371c { 'aliquot_tag': 'DUP_76b0f18e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03348.DUP_76b0f18e.WXS.T.hg38 C3L-03348 PDA WXS tumor CPT0167050033 9dcf8cb9-1927-4b2b-a6aa-84971c658db7_wxs_gdc_realn.bam 32971728513 BAM harmonized CPTAC3 9b9d6e4e-7609-4a76-bd56-2dba820b91d5 5bc2f670e4be81f8fdc5c3533fc03538 { 'aliquot_tag': 'DUP_76b0f18e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03348.DUP_9fd354bb.WXS.T C3L-03348 PDA WXS tumor CPT0167050035 CPT0167050035.WholeExome.RP-1303.bam 38199389522 BAM aligned CPTAC3 a3063468-775a-4305-b9b2-7f32355d351d 39e019269fe43b06d4ee37fa19223ccd { 'aliquot_tag': 'DUP_9fd354bb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03348.DUP_9fd354bb.WXS.T.hg38 C3L-03348 PDA WXS tumor CPT0167050035 fc5be7e1-d584-45b2-bfad-1cfd971ca4ec_wxs_gdc_realn.bam 52677237299 BAM harmonized CPTAC3 a5a5ff62-5ea9-404c-a530-7e15987c1b52 a1aa493fef2f9bb725c65ddca6c699d6 { 'aliquot_tag': 'DUP_9fd354bb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3L-03348.DUP_a0f836f3.RNA-Seq.chimeric.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050040 15353063-1d3e-4874-a010-60891b28858b.rna_seq.chimeric.gdc_realn.bam 271117993 BAM chimeric harmonized CPTAC3 7ae20b2f-47bf-47f7-9c7e-31b3cdab0c5f 0a5d7745993a76a743c8f3881173dc94 { 'aliquot_tag': 'DUP_a0f836f3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-03348.DUP_a0f836f3.RNA-Seq.genomic.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050040 15353063-1d3e-4874-a010-60891b28858b.rna_seq.genomic.gdc_realn.bam 6502771481 BAM genomic harmonized CPTAC3 34daf20b-480f-4f17-bc58-b79bdee6d469 13f771d101a2c46058b4ccae488aef4a { 'aliquot_tag': 'DUP_a0f836f3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-03348.DUP_a0f836f3.RNA-Seq.R1_L008.T C3L-03348 PDA RNA-Seq tumor CPT0167050040 220114_UNC32-K00270_0310_AHMWT5BBXY_GTCGGAGC-GGTTATAA_S27_L008_R1_001.fastq.gz 2992954750 FASTQ R1_L008 unaligned CPTAC3 fbaddd20-86dc-4864-9ba7-d0b93036a1d4 19cfcf6a992b1508362b8b8807a908c8 { 'aliquot_tag': 'DUP_a0f836f3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L008' } +C3L-03348.DUP_a0f836f3.RNA-Seq.R2_L008.T C3L-03348 PDA RNA-Seq tumor CPT0167050040 220114_UNC32-K00270_0310_AHMWT5BBXY_GTCGGAGC-GGTTATAA_S27_L008_R2_001.fastq.gz 3352630699 FASTQ R2_L008 unaligned CPTAC3 66ed3b74-efd6-42d6-a8aa-f5d62759b401 5100684c30b121dd2b849d7f139a575c { 'aliquot_tag': 'DUP_a0f836f3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L008' } +C3L-03348.DUP_a0f836f3.RNA-Seq.transcriptome.T.hg38 C3L-03348 PDA RNA-Seq tumor CPT0167050040 15353063-1d3e-4874-a010-60891b28858b.rna_seq.transcriptome.gdc_realn.bam 8151666680 BAM transcriptome harmonized CPTAC3 b9089b07-9681-4d4c-8a3f-a12482936c05 76d24eff6e6dc4b1010c2225b67eb2ee { 'aliquot_tag': 'DUP_a0f836f3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3L-03348.DUP_e8d4642d.WXS.T C3L-03348 PDA WXS tumor CPT0167050034 CPT0167050034.WholeExome.RP-1303.bam 22428025682 BAM aligned CPTAC3 995d7f4a-5260-4a37-9210-8b3a0357fc9a c697b24c93cbebdcf73f3b7b7a34350a { 'aliquot_tag': 'DUP_e8d4642d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03348.DUP_e8d4642d.WXS.T.hg38 C3L-03348 PDA WXS tumor CPT0167050034 0a27616d-0796-4609-ad59-2448a75d7749_wxs_gdc_realn.bam 31087045292 BAM harmonized CPTAC3 e5bd8d9b-8c06-4f9a-a17c-5659a79c6d5f 2c76f026d8a65618bb13caa0ea7b3ecb { 'aliquot_tag': 'DUP_e8d4642d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3L-03348.RNA-Seq.R1_L001.A C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATCCACTG-AGGTGCGT_S1_L001_R1_001.fastq.gz 3568113260 FASTQ R1_L001 unaligned CPTAC3 12e19f35-3916-421f-bfe4-db8e45c480cc aa30e5444d6bacf1b607a28852a8f28e { 'aliquot_tag': 'ALQ_4617bbc8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03348.RNA-Seq.R1_L008.T C3L-03348 PDA RNA-Seq tumor CPT0167050040 220114_UNC32-K00270_0310_AHMWT5BBXY_GTCGGAGC-GGTTATAA_S27_L008_R1_001.fastq.gz 2992954750 FASTQ R1_L008 unaligned CPTAC3 fbaddd20-86dc-4864-9ba7-d0b93036a1d4 19cfcf6a992b1508362b8b8807a908c8 { 'aliquot_tag': 'ALQ_a0f836f3', 'gdc_sample_type': 'Primary Tumor' } -C3L-03348.RNA-Seq.R2_L001.A C3L-03348 PDA RNA-Seq tissue_normal CPT0167060032 220126_UNC32-K00270_0314_AHMVJ7BBXY_ATCCACTG-AGGTGCGT_S1_L001_R2_001.fastq.gz 3989549862 FASTQ R2_L001 unaligned CPTAC3 0c7bd6f6-18ea-46d7-9aaf-49c340317959 6fd92c331911070fd11ef1d3482449cc { 'aliquot_tag': 'ALQ_4617bbc8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03348.RNA-Seq.R2_L008.T C3L-03348 PDA RNA-Seq tumor CPT0167050040 220114_UNC32-K00270_0310_AHMWT5BBXY_GTCGGAGC-GGTTATAA_S27_L008_R2_001.fastq.gz 3352630699 FASTQ R2_L008 unaligned CPTAC3 66ed3b74-efd6-42d6-a8aa-f5d62759b401 5100684c30b121dd2b849d7f139a575c { 'aliquot_tag': 'ALQ_a0f836f3', 'gdc_sample_type': 'Primary Tumor' } C3L-03350.MethArray.Green.T C3L-03350 PDA Methylation Array tumor CPT0198310008 203561450030_R06C01_Grn.idat 13676216 IDAT Green NA CPTAC3 a85a8a13-e047-4e86-94c8-3f070d40971b beac862c52e72f57a01d02dc3b9004ff { 'aliquot_tag': 'ALQ_9633cdee', 'gdc_sample_type': 'Primary Tumor' } C3L-03350.MethArray.Red.T C3L-03350 PDA Methylation Array tumor CPT0198310008 203561450030_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 94a4729b-2548-408c-acfd-e21b6676634f 092da6eaa4d523f244241b553a76d214 { 'aliquot_tag': 'ALQ_9633cdee', 'gdc_sample_type': 'Primary Tumor' } C3L-03350.miRNA-Seq.T C3L-03350 PDA miRNA-Seq tumor CPT0198310011 190712_UNC32-K00270_0192_BH7HL3BBXY_CCGTCC_S39_L005_R1_001.unaln.bam 244660424 BAM unaligned CPTAC3 d9497292-ce88-4a2c-ba01-cb532316352c e8c04c64348f5721b579ce52a468d901 { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor' } C3L-03350.miRNA-Seq.T.hg38 C3L-03350 PDA miRNA-Seq tumor CPT0198310011 fc78ccbd-64ea-448f-9389-7e4fe7ef4b6b_mirnaseq_gdc_realn.bam 281234811 BAM harmonized CPTAC3 fad10a93-c712-44fa-8e7d-475ab01ee09d 90a2eddbe50b5ba6d70bb063141264db { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03350.RNA-Seq.chimeric.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 dc8a291f-e1da-453e-884e-bfb112058607.rna_seq.chimeric.gdc_realn.bam 35279358 BAM chimeric harmonized CPTAC3 a3da7226-415d-443d-83a5-d6c2854486e3 b58d108011b9c7ff4de6349185e1c048 { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03350.RNA-Seq.genomic.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 dc8a291f-e1da-453e-884e-bfb112058607.rna_seq.genomic.gdc_realn.bam 8277980120 BAM genomic harmonized CPTAC3 2e2d71d8-e5ef-458b-be15-58ab0efbaa8b 3adb4298abfcf93de045eaf29f3e967c { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03350.RNA-Seq.R1_L005.T C3L-03350 PDA RNA-Seq tumor CPT0198310011 190621_UNC32-K00270_0185_BH7G72BBXY_CCATTCGA-GTTGTCCG_S19_L005_R1_001.fastq.gz 3882319565 FASTQ R1_L005 unaligned CPTAC3 3a223270-44f3-44c0-aef3-1cd3b7d84f4a 6bcde7b5e4a4b9af21856a85c06c742f { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03350.RNA-Seq.R2_L005.T C3L-03350 PDA RNA-Seq tumor CPT0198310011 190621_UNC32-K00270_0185_BH7G72BBXY_CCATTCGA-GTTGTCCG_S19_L005_R2_001.fastq.gz 4167422484 FASTQ R2_L005 unaligned CPTAC3 e6e786ba-07df-4f1d-afe3-a24537a37c89 54343d6e47c6c6c0daab87da9f020355 { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03350.RNA-Seq.transcriptome.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 dc8a291f-e1da-453e-884e-bfb112058607.rna_seq.transcriptome.gdc_realn.bam 10025724441 BAM transcriptome harmonized CPTAC3 3fdb13ae-285f-413d-9173-24efbaee50a6 ab0950a92c513b5265a69c3be3229bb7 { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor' } +C3L-03350.RNA-Seq.chimeric.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 7273123b-6e82-4dab-afe8-660a4022cbe2.rna_seq.chimeric.gdc_realn.bam 35252484 BAM chimeric harmonized CPTAC3 37a91e76-bd49-4e63-b0c0-dcfccf5b28f7 bb987273262b46e5dc9f5f981f8d63ee { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor' } +C3L-03350.RNA-Seq.genomic.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 7273123b-6e82-4dab-afe8-660a4022cbe2.rna_seq.genomic.gdc_realn.bam 8279102681 BAM genomic harmonized CPTAC3 6215728e-8b41-4cf0-ae80-9bf84b064202 915feb6dff88b0d13b087ec010d6db63 { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor' } +C3L-03350.RNA-Seq.R1_L005.T C3L-03350 PDA RNA-Seq tumor CPT0198310011 190621_UNC32-K00270_0185_BH7G72BBXY_CCATTCGA-GTTGTCCG_S19_L005_R1_001.fastq.gz 3882319565 FASTQ R1_L005 unaligned CPTAC3 3a223270-44f3-44c0-aef3-1cd3b7d84f4a 6bcde7b5e4a4b9af21856a85c06c742f { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-03350.RNA-Seq.R2_L005.T C3L-03350 PDA RNA-Seq tumor CPT0198310011 190621_UNC32-K00270_0185_BH7G72BBXY_CCATTCGA-GTTGTCCG_S19_L005_R2_001.fastq.gz 4167422484 FASTQ R2_L005 unaligned CPTAC3 e6e786ba-07df-4f1d-afe3-a24537a37c89 54343d6e47c6c6c0daab87da9f020355 { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-03350.RNA-Seq.transcriptome.T.hg38 C3L-03350 PDA RNA-Seq tumor CPT0198310011 7273123b-6e82-4dab-afe8-660a4022cbe2.rna_seq.transcriptome.gdc_realn.bam 11300823154 BAM transcriptome harmonized CPTAC3 dae9b03d-e405-4a32-a764-dc205f946580 586728c4b22249417a2a0b7541df3517 { 'aliquot_tag': 'ALQ_f6f4440b', 'gdc_sample_type': 'Primary Tumor' } C3L-03350.Targeted.T C3L-03350 PDA Targeted Sequencing tumor CPT0198310008 CPT0198310008.CustomSelection.RP-1303.PDO-18786.bam 4431220616 BAM aligned CPTAC3 b42c6b7f-1d74-404e-942d-0e4965e6c37b dba41d9f5ac240be6a1a036c67904416 { 'aliquot_tag': 'ALQ_9633cdee', 'gdc_sample_type': 'Primary Tumor' } C3L-03350.Targeted.T.hg38 C3L-03350 PDA Targeted Sequencing tumor CPT0198310008 8441a514-b64c-438e-8146-28af1c73ee54_targetedsequencing_gdc_realn.bam 6163044828 BAM harmonized CPTAC3 2db0d00d-6a5a-402c-89d3-3b0995b26747 18d656df8f049a92c4adbc9ad65a1eec { 'aliquot_tag': 'ALQ_9633cdee', 'gdc_sample_type': 'Primary Tumor' } C3L-03350.WGS.N C3L-03350 PDA WGS blood_normal CPT0198350002 CPT0198350002.WholeGenome.RP-1303.bam 67492712507 BAM aligned CPTAC3 4d22e85c-cf4a-410a-b570-8cafab308714 c0a95560ae1e10fa469a2ba35923e335 { 'aliquot_tag': 'ALQ_83668230', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13138,8 +13989,8 @@ C3L-03356.miRNA-Seq.T C3L-03356 PDA miRNA-Seq tumor CPT0198420010 190712_UNC32-K C3L-03356.miRNA-Seq.T.hg38 C3L-03356 PDA miRNA-Seq tumor CPT0198420010 846740a0-48f8-4822-bcdc-2b62f28664d2_mirnaseq_gdc_realn.bam 258004433 BAM harmonized CPTAC3 755a44a2-1732-41f8-abd3-89159bf4a3c7 ba38a2f584b9df0c4711b9da0a96b4fa { 'aliquot_tag': 'ALQ_db563ef5', 'gdc_sample_type': 'Primary Tumor' } C3L-03356.RNA-Seq.chimeric.T.hg38 C3L-03356 PDA RNA-Seq tumor CPT0198420010 647f72d1-f49b-47c3-998f-ba437f9bb8c7.rna_seq.chimeric.gdc_realn.bam 35953010 BAM chimeric harmonized CPTAC3 0dc9f069-c393-496c-9db6-2b3567ac48cf e1d08f2aab93c39fc0149c049786ac93 { 'aliquot_tag': 'ALQ_db563ef5', 'gdc_sample_type': 'Primary Tumor' } C3L-03356.RNA-Seq.genomic.T.hg38 C3L-03356 PDA RNA-Seq tumor CPT0198420010 647f72d1-f49b-47c3-998f-ba437f9bb8c7.rna_seq.genomic.gdc_realn.bam 9816391837 BAM genomic harmonized CPTAC3 522d9365-bc84-43d8-9f69-bb1d2da1a6a6 0662928ff167a4485716ee4bee21cd7b { 'aliquot_tag': 'ALQ_db563ef5', 'gdc_sample_type': 'Primary Tumor' } -C3L-03356.RNA-Seq.R1_L005.T C3L-03356 PDA RNA-Seq tumor CPT0198420010 190614_UNC32-K00270_0182_BH7777BBXY_CGTTAGAA-TTCAGGTC_S17_L005_R1_001.fastq.gz 3882088996 FASTQ R1_L005 unaligned CPTAC3 61fa646e-a7db-4be2-ab3b-b05b21b48ff5 2de02dd11aa199084bf988d716ba5b1c { 'aliquot_tag': 'ALQ_db563ef5', 'gdc_sample_type': 'Primary Tumor' } -C3L-03356.RNA-Seq.R2_L005.T C3L-03356 PDA RNA-Seq tumor CPT0198420010 190614_UNC32-K00270_0182_BH7777BBXY_CGTTAGAA-TTCAGGTC_S17_L005_R2_001.fastq.gz 4322512693 FASTQ R2_L005 unaligned CPTAC3 17eeac41-1327-4e26-92fb-5cb9cdb96767 497ce561237c59eaf36116d37b5a55f3 { 'aliquot_tag': 'ALQ_db563ef5', 'gdc_sample_type': 'Primary Tumor' } +C3L-03356.RNA-Seq.R1_L005.T C3L-03356 PDA RNA-Seq tumor CPT0198420010 190614_UNC32-K00270_0182_BH7777BBXY_CGTTAGAA-TTCAGGTC_S17_L005_R1_001.fastq.gz 3882088996 FASTQ R1_L005 unaligned CPTAC3 61fa646e-a7db-4be2-ab3b-b05b21b48ff5 2de02dd11aa199084bf988d716ba5b1c { 'aliquot_tag': 'ALQ_db563ef5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-03356.RNA-Seq.R2_L005.T C3L-03356 PDA RNA-Seq tumor CPT0198420010 190614_UNC32-K00270_0182_BH7777BBXY_CGTTAGAA-TTCAGGTC_S17_L005_R2_001.fastq.gz 4322512693 FASTQ R2_L005 unaligned CPTAC3 17eeac41-1327-4e26-92fb-5cb9cdb96767 497ce561237c59eaf36116d37b5a55f3 { 'aliquot_tag': 'ALQ_db563ef5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-03356.RNA-Seq.transcriptome.T.hg38 C3L-03356 PDA RNA-Seq tumor CPT0198420010 647f72d1-f49b-47c3-998f-ba437f9bb8c7.rna_seq.transcriptome.gdc_realn.bam 10203055148 BAM transcriptome harmonized CPTAC3 ecbdf753-7924-4234-b871-6d43d5f401cf ce1b1803346192f5ff26d321390fe74b { 'aliquot_tag': 'ALQ_db563ef5', 'gdc_sample_type': 'Primary Tumor' } C3L-03356.Targeted.T C3L-03356 PDA Targeted Sequencing tumor CPT0198420007 CPT0198420007.CustomSelection.RP-1303.PDO-18786.bam 4929898503 BAM aligned CPTAC3 283e4bbf-dec3-4a93-bb4a-e4da0f4efef6 a114c0904e997ef13dcdc7535e663d5d { 'aliquot_tag': 'ALQ_5c299a17', 'gdc_sample_type': 'Primary Tumor' } C3L-03356.Targeted.T.hg38 C3L-03356 PDA Targeted Sequencing tumor CPT0198420007 4ab9c836-57fb-4a0a-946d-b57b5986b7c5_targetedsequencing_gdc_realn.bam 6819961395 BAM harmonized CPTAC3 25e0612e-1358-47fe-8c64-08dbf12b181c 30baca96cac77780850a7aabe56a1262 { 'aliquot_tag': 'ALQ_5c299a17', 'gdc_sample_type': 'Primary Tumor' } @@ -13157,11 +14008,11 @@ C3L-03371.MethArray.Red.A C3L-03371 PDA Methylation Array tissue_normal CPT02758 C3L-03371.MethArray.Red.T C3L-03371 PDA Methylation Array tumor CPT0275870006 203561450018_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 23424878-3656-4d50-8361-b6f88e81942b e452be7b0af4b5c7745de6b5c2d06219 { 'aliquot_tag': 'ALQ_d9dcaabd', 'gdc_sample_type': 'Primary Tumor' } C3L-03371.miRNA-Seq.T C3L-03371 PDA miRNA-Seq tumor CPT0275870009 190712_UNC32-K00270_0192_BH7HL3BBXY_TCCCGA_S22_L004_R1_001.unaln.bam 156803811 BAM unaligned CPTAC3 0e11e966-7771-4ce3-8a9c-80bc3b19c239 7865436f5d1ac7d33a457311ea51e864 { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor' } C3L-03371.miRNA-Seq.T.hg38 C3L-03371 PDA miRNA-Seq tumor CPT0275870009 dfd78d92-4529-431f-a8a4-7b0c090372ae_mirnaseq_gdc_realn.bam 179976957 BAM harmonized CPTAC3 1bf25f0d-7fb8-4e04-8fb6-4c0b7efbdaef 466308e3521fcf84c3aaa8d04065a228 { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor' } -C3L-03371.RNA-Seq.chimeric.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 5fb51f39-006d-4385-ac89-597f0e5655bb.rna_seq.chimeric.gdc_realn.bam 31644577 BAM chimeric harmonized CPTAC3 e9c9afc7-2bcc-4468-9e43-eae580f27581 b44e9743c99ac3a8e299a45684a93b5e { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor' } -C3L-03371.RNA-Seq.genomic.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 5fb51f39-006d-4385-ac89-597f0e5655bb.rna_seq.genomic.gdc_realn.bam 10244148503 BAM genomic harmonized CPTAC3 79a695d8-da31-4943-b5b9-ba26ffb05ad3 1d3e6f57ef7f92b8f10f75002851c96d { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor' } -C3L-03371.RNA-Seq.R1_L001.T C3L-03371 PDA RNA-Seq tumor CPT0275870009 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4782218516 FASTQ R1_L001 unaligned CPTAC3 1634a736-f999-4d14-a5b9-941444523601 797adfb3b06fe28d583a79dce45737d4 { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor' } -C3L-03371.RNA-Seq.R2_L001.T C3L-03371 PDA RNA-Seq tumor CPT0275870009 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 4852328372 FASTQ R2_L001 unaligned CPTAC3 bc8d50f6-1a81-48ff-ab5b-d72e57adc1f1 21399213865e4c07ad112069768f7d0d { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor' } -C3L-03371.RNA-Seq.transcriptome.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 5fb51f39-006d-4385-ac89-597f0e5655bb.rna_seq.transcriptome.gdc_realn.bam 11628552608 BAM transcriptome harmonized CPTAC3 b9903305-6896-421f-b03d-657dd704f110 9ab208aea6bbbbd0a2f0f044ae6d0ae8 { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor' } +C3L-03371.RNA-Seq.chimeric.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 9afb97d8-cd7d-4795-b410-d1b7614b543d.rna_seq.chimeric.gdc_realn.bam 31603216 BAM chimeric harmonized CPTAC3 dcb3dbec-2fd3-48bf-bcd7-fa344845a9a4 d29f4861ae2e36d09eee8798dc3d5066 { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor' } +C3L-03371.RNA-Seq.genomic.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 9afb97d8-cd7d-4795-b410-d1b7614b543d.rna_seq.genomic.gdc_realn.bam 10245837803 BAM genomic harmonized CPTAC3 ac471a62-3235-4e66-a93a-4ba3994d24ab 96a143859c28878c892adaf411079676 { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor' } +C3L-03371.RNA-Seq.R1_L001.T C3L-03371 PDA RNA-Seq tumor CPT0275870009 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4782218516 FASTQ R1_L001 unaligned CPTAC3 1634a736-f999-4d14-a5b9-941444523601 797adfb3b06fe28d583a79dce45737d4 { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-03371.RNA-Seq.R2_L001.T C3L-03371 PDA RNA-Seq tumor CPT0275870009 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 4852328372 FASTQ R2_L001 unaligned CPTAC3 bc8d50f6-1a81-48ff-ab5b-d72e57adc1f1 21399213865e4c07ad112069768f7d0d { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-03371.RNA-Seq.transcriptome.T.hg38 C3L-03371 PDA RNA-Seq tumor CPT0275870009 9afb97d8-cd7d-4795-b410-d1b7614b543d.rna_seq.transcriptome.gdc_realn.bam 12867195399 BAM transcriptome harmonized CPTAC3 50970b7a-945e-4e82-9908-e0114058742e 6585c53408053fbe97b856625ed3b583 { 'aliquot_tag': 'ALQ_4963b72c', 'gdc_sample_type': 'Primary Tumor' } C3L-03371.Targeted.T C3L-03371 PDA Targeted Sequencing tumor CPT0275870006 CPT0275870006.CustomSelection.RP-1303.PDO-18786.bam 4963174450 BAM aligned CPTAC3 2fc35e3d-48ee-4577-9271-160008a0ddea 253eb8b670180c0c1d8d292886143af4 { 'aliquot_tag': 'ALQ_d9dcaabd', 'gdc_sample_type': 'Primary Tumor' } C3L-03371.Targeted.T.hg38 C3L-03371 PDA Targeted Sequencing tumor CPT0275870006 b64d6b49-8c91-43e1-b52a-e7d2e32de154_targetedsequencing_gdc_realn.bam 6849606441 BAM harmonized CPTAC3 531f0389-de5e-43f5-b0f3-204418ca8aab a3bf76253e6a682f14aa873858ff8d89 { 'aliquot_tag': 'ALQ_d9dcaabd', 'gdc_sample_type': 'Primary Tumor' } C3L-03371.WGS.N C3L-03371 PDA WGS blood_normal CPT0265930002 CPT0265930002.WholeGenome.RP-1303.bam 70737566167 BAM aligned CPTAC3 bf797d5a-dcaa-4f65-9982-21de3dbee21b 001fe70ed85a1f5e7e1b25d44f219fd7 { 'aliquot_tag': 'ALQ_2cc71b5f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13178,11 +14029,11 @@ C3L-03372.MethArray.Green.T C3L-03372 GBM Methylation Array tumor CPT0275960006 C3L-03372.MethArray.Red.T C3L-03372 GBM Methylation Array tumor CPT0275960006 204367490151_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 17e7d89a-fd06-4bbb-a052-1c0b3e40daa6 23f82e1c55875aef2fbb1391b678d076 { 'aliquot_tag': 'ALQ_2fe050a8', 'gdc_sample_type': 'Primary Tumor' } C3L-03372.miRNA-Seq.T C3L-03372 GBM miRNA-Seq tumor CPT0275960009 200403_UNC31-K00269_0274_AHCF7GBBXY_ATGTCA_S39_L002_R1_001.unaln.bam 252595654 BAM unaligned CPTAC3 3791b8ee-e0dc-4638-bb42-2f3763171e50 faaa0479a28cd0a70b8f588d2565196e { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor' } C3L-03372.miRNA-Seq.T.hg38 C3L-03372 GBM miRNA-Seq tumor CPT0275960009 dc89a039-334e-4161-bf3c-fb08ce3dd668_mirnaseq_gdc_realn.bam 282560822 BAM harmonized CPTAC3 e97614e1-f3b1-4cdd-a1b0-a63d474ba783 45f7d02d9b7e385c8bb305bc972d44a7 { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor' } -C3L-03372.RNA-Seq.chimeric.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 a908ca1e-7b9f-4761-b9ae-757ca8a97dfe.rna_seq.chimeric.gdc_realn.bam 410459178 BAM chimeric harmonized CPTAC3 9bae61df-2fdd-4844-a04c-147b61fce5b5 f06b43644af9311a2615550a42132a9f { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor' } -C3L-03372.RNA-Seq.genomic.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 a908ca1e-7b9f-4761-b9ae-757ca8a97dfe.rna_seq.genomic.gdc_realn.bam 7858278618 BAM genomic harmonized CPTAC3 802205eb-df2c-482e-bfd7-c12e620d57e0 b558ee23a3ffb2362a29e6f6e3feaa07 { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor' } -C3L-03372.RNA-Seq.R1_L002.T C3L-03372 GBM RNA-Seq tumor CPT0275960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R1_001.fastq.gz 3400877684 FASTQ R1_L002 unaligned CPTAC3 8109363c-1835-4a99-92e2-e83b25a6b90f 94383d7fc37e6af11f3fb4ac899ce35d { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor' } -C3L-03372.RNA-Seq.R2_L002.T C3L-03372 GBM RNA-Seq tumor CPT0275960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R2_001.fastq.gz 3920350038 FASTQ R2_L002 unaligned CPTAC3 650b80e4-de52-493d-98b9-8ba98fbf901b 5b6ef1a8229a5a1fcb8ca0eff1ec47c0 { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor' } -C3L-03372.RNA-Seq.transcriptome.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 a908ca1e-7b9f-4761-b9ae-757ca8a97dfe.rna_seq.transcriptome.gdc_realn.bam 6099507807 BAM transcriptome harmonized CPTAC3 78ad46ac-e70e-4c6a-b023-a390ad723fd9 e0227fde0e2309e6c13b146499022f17 { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor' } +C3L-03372.RNA-Seq.chimeric.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 f66cf332-b2b6-4acd-a53f-edfabc23a9fd.rna_seq.chimeric.gdc_realn.bam 410409829 BAM chimeric harmonized CPTAC3 a8ea80f4-824b-4855-98c5-0a406183e098 b441e8850f8b00abed1dfabd0be8b46c { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor' } +C3L-03372.RNA-Seq.genomic.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 f66cf332-b2b6-4acd-a53f-edfabc23a9fd.rna_seq.genomic.gdc_realn.bam 7859272855 BAM genomic harmonized CPTAC3 e407f1d2-fd4c-4858-8b16-f5f3c716e2f9 88e5f15b887b8dd9e7cbf33d90e4acd6 { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor' } +C3L-03372.RNA-Seq.R1_L002.T C3L-03372 GBM RNA-Seq tumor CPT0275960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R1_001.fastq.gz 3400877684 FASTQ R1_L002 unaligned CPTAC3 8109363c-1835-4a99-92e2-e83b25a6b90f 94383d7fc37e6af11f3fb4ac899ce35d { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-03372.RNA-Seq.R2_L002.T C3L-03372 GBM RNA-Seq tumor CPT0275960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R2_001.fastq.gz 3920350038 FASTQ R2_L002 unaligned CPTAC3 650b80e4-de52-493d-98b9-8ba98fbf901b 5b6ef1a8229a5a1fcb8ca0eff1ec47c0 { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-03372.RNA-Seq.transcriptome.T.hg38 C3L-03372 GBM RNA-Seq tumor CPT0275960009 f66cf332-b2b6-4acd-a53f-edfabc23a9fd.rna_seq.transcriptome.gdc_realn.bam 6919499908 BAM transcriptome harmonized CPTAC3 63570d1d-15f0-4468-af26-b69122d353ac e48fa1933d6c8e07f131f6666674c50f { 'aliquot_tag': 'ALQ_bf5f4d39', 'gdc_sample_type': 'Primary Tumor' } C3L-03372.WGS.N C3L-03372 GBM WGS blood_normal CPT0265940002 CPT0265940002.WholeGenome.RP-2158.bam 30822237663 BAM aligned CPTAC3 31a89f6d-8060-4ffa-b67c-ee7de92e385b 1fdd13b9a447363b79781da3cf237559 { 'aliquot_tag': 'ALQ_9ee7c74f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03372.WGS.N.hg38 C3L-03372 GBM WGS blood_normal CPT0265940002 69294b54-61df-4d78-a0da-7e5f1420368c_wgs_gdc_realn.bam 90435302917 BAM harmonized CPTAC3 e93293ef-83a7-4e72-8e5d-632a9ae6fb51 b9de531a0dc0c01ebe82d3e294c10f60 { 'aliquot_tag': 'ALQ_9ee7c74f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03372.WGS.T C3L-03372 GBM WGS tumor CPT0275960006 CPT0275960006.WholeGenome.RP-2158.bam 21511353026 BAM aligned CPTAC3 3768276d-ccd5-42ab-a4ed-ef40990aa5b0 bcef20db68bb6f428a67c53357ef354f { 'aliquot_tag': 'ALQ_2fe050a8', 'gdc_sample_type': 'Primary Tumor' } @@ -13201,16 +14052,19 @@ C3L-03378.miRNA-Seq.T C3L-03378 HNSCC miRNA-Seq tumor CPT0199880009 190228_UNC32 C3L-03378.miRNA-Seq.T.hg38 C3L-03378 HNSCC miRNA-Seq tumor CPT0199880009 dcac4fc8-3962-4e14-b7fe-e25626b06dde_mirnaseq_gdc_realn.bam 289395161 BAM harmonized CPTAC3 eadbf333-f492-41dc-a929-fd8b3eb6c8e4 e8a83ca6e7bc5209954e886e775e271d { 'aliquot_tag': 'ALQ_2094647e', 'gdc_sample_type': 'Primary Tumor' } C3L-03378.RNA-Seq.chimeric.A.hg38 C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 ed07a9fb-a1f1-402a-a0de-fab047778a2c.rna_seq.chimeric.gdc_realn.bam 137926568 BAM chimeric harmonized CPTAC3 82abc197-7bb1-4c4e-92aa-aea484364be6 0f8123414e340ce02a711073406c1258 { 'aliquot_tag': 'ALQ_1df44dce', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03378.RNA-Seq.chimeric.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 0816fbe5-a5b9-4278-97a8-45fc6a4abd8b.rna_seq.chimeric.gdc_realn.bam 264090627 BAM chimeric harmonized CPTAC3 3a601666-7ddf-46de-85c0-babe6034e0e6 73ceb246293386f6258a30f37885ef45 { 'aliquot_tag': 'ALQ_2094647e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03378.RNA-Seq.genomic.A.hg38 C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 ed07a9fb-a1f1-402a-a0de-fab047778a2c.rna_seq.genomic.gdc_realn.bam 7521311927 BAM genomic harmonized CPTAC3 34cbc5a1-033c-4f7b-b00b-dfb18526edbf 1f9291d304bcf8baa0cfe0c37be8bcb4 { 'aliquot_tag': 'ALQ_1df44dce', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03378.RNA-Seq.genomic.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 0816fbe5-a5b9-4278-97a8-45fc6a4abd8b.rna_seq.genomic.gdc_realn.bam 10030347473 BAM genomic harmonized CPTAC3 4f51811d-60dd-4bf8-9803-f2ba635b1912 bb022fb2aa6f7125afa25acddc8628ce { 'aliquot_tag': 'ALQ_2094647e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03378.RNA-Seq.R1_L001.T C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 190405_UNC32-K00270_0161_BH55FNBBXY_GCCAAT_S4_L001_R1_001.fastq.gz 4777250256 FASTQ R1_L001 unaligned CPTAC3 5290e03c-be2a-45ea-80b4-776a5ce1ce2f c49de7e8b17397e03cc32f53bc029192 { 'aliquot_tag': 'ALQ_2094647e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03378.RNA-Seq.R1_L007.A C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R1_001.fastq.gz 3654791322 FASTQ R1_L007 unaligned CPTAC3 77b18098-8d38-4e5e-8131-07fb0109099f 7db9f6241c05f26b88dffa23658a8826 { 'aliquot_tag': 'ALQ_1df44dce', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03378.RNA-Seq.R1_.T C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 20210723_P2_H1_WB7988-plate2_S85_R1_001.fastq.gz 6737442394 FASTQ R1_ unaligned CPTAC3 2e149408-a843-40d0-9aa8-9ecd461a1e30 22f7b1b0e497de65af6a1f1ccf2193f6 { 'aliquot_tag': 'ALQ_cc784569', 'gdc_sample_type': 'Primary Tumor' } -C3L-03378.RNA-Seq.R2_L001.T C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 190405_UNC32-K00270_0161_BH55FNBBXY_GCCAAT_S4_L001_R2_001.fastq.gz 5384513755 FASTQ R2_L001 unaligned CPTAC3 61f672cd-e63d-4e8d-b501-ea42b0e04989 ffebd97ff87693df09f0e9a2ef22c6a0 { 'aliquot_tag': 'ALQ_2094647e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03378.RNA-Seq.R2_L007.A C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R2_001.fastq.gz 4035185144 FASTQ R2_L007 unaligned CPTAC3 e4dd11db-f583-4498-ba79-381e045765a7 403a6cf11fb668cc757feb0aa4a07ebd { 'aliquot_tag': 'ALQ_1df44dce', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03378.RNA-Seq.R2_.T C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 20210723_P2_H1_WB7988-plate2_S85_R2_001.fastq.gz 7000302972 FASTQ R2_ unaligned CPTAC3 c1d95347-4092-459b-bfc0-9f8b132fec1e d07f0f98e79f46c1a63b156e5f53cdab { 'aliquot_tag': 'ALQ_cc784569', 'gdc_sample_type': 'Primary Tumor' } +C3L-03378.RNA-Seq.chimeric.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 305d1b5d-1311-4a67-8edf-426d163bd22e.rna_seq.chimeric.gdc_realn.bam 238085521 BAM chimeric harmonized CPTAC3 ca0c6734-4a7d-4cfb-9fed-636724739890 6f662d299f58c3454862dc23eb2b54b3 { 'aliquot_tag': 'ALQ_cc784569', 'gdc_sample_type': 'Primary Tumor' } +C3L-03378.RNA-Seq.genomic.A.hg38 C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 ed07a9fb-a1f1-402a-a0de-fab047778a2c.rna_seq.genomic.gdc_realn.bam 7521311927 BAM genomic harmonized CPTAC3 f5a05ceb-2d3f-4615-bee9-9a813a169d05 1f9291d304bcf8baa0cfe0c37be8bcb4 { 'aliquot_tag': 'ALQ_1df44dce', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03378.RNA-Seq.genomic.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 0816fbe5-a5b9-4278-97a8-45fc6a4abd8b.rna_seq.genomic.gdc_realn.bam 10030347473 BAM genomic harmonized CPTAC3 1f4977ec-64f0-4a98-bcdb-052aa3657417 bb022fb2aa6f7125afa25acddc8628ce { 'aliquot_tag': 'ALQ_2094647e', 'gdc_sample_type': 'Primary Tumor' } +C3L-03378.RNA-Seq.genomic.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 305d1b5d-1311-4a67-8edf-426d163bd22e.rna_seq.genomic.gdc_realn.bam 11790346560 BAM genomic harmonized CPTAC3 c3e37fa1-981c-4420-8c97-6ae28634aafd a04357c2205b40f6d19c1eed4821ee3b { 'aliquot_tag': 'ALQ_cc784569', 'gdc_sample_type': 'Primary Tumor' } +C3L-03378.RNA-Seq.R1_L001.T C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 190405_UNC32-K00270_0161_BH55FNBBXY_GCCAAT_S4_L001_R1_001.fastq.gz 4777250256 FASTQ R1_L001 unaligned CPTAC3 5290e03c-be2a-45ea-80b4-776a5ce1ce2f c49de7e8b17397e03cc32f53bc029192 { 'aliquot_tag': 'ALQ_2094647e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-03378.RNA-Seq.R1_L007.A C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R1_001.fastq.gz 3654791322 FASTQ R1_L007 unaligned CPTAC3 77b18098-8d38-4e5e-8131-07fb0109099f 7db9f6241c05f26b88dffa23658a8826 { 'aliquot_tag': 'ALQ_1df44dce', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-03378.RNA-Seq.R2_L001.T C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 190405_UNC32-K00270_0161_BH55FNBBXY_GCCAAT_S4_L001_R2_001.fastq.gz 5384513755 FASTQ R2_L001 unaligned CPTAC3 61f672cd-e63d-4e8d-b501-ea42b0e04989 ffebd97ff87693df09f0e9a2ef22c6a0 { 'aliquot_tag': 'ALQ_2094647e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-03378.RNA-Seq.R2_L007.A C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATGTCA_S1_L007_R2_001.fastq.gz 4035185144 FASTQ R2_L007 unaligned CPTAC3 e4dd11db-f583-4498-ba79-381e045765a7 403a6cf11fb668cc757feb0aa4a07ebd { 'aliquot_tag': 'ALQ_1df44dce', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-03378.RNA-Seq.T C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 20210723_P2_H1_WB7988-plate2_S85_R1_001.fastq.gz 6737442394 FASTQ unaligned CPTAC3 2e149408-a843-40d0-9aa8-9ecd461a1e30 22f7b1b0e497de65af6a1f1ccf2193f6 +C3L-03378.RNA-Seq.T C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 20210723_P2_H1_WB7988-plate2_S85_R2_001.fastq.gz 7000302972 FASTQ unaligned CPTAC3 c1d95347-4092-459b-bfc0-9f8b132fec1e d07f0f98e79f46c1a63b156e5f53cdab C3L-03378.RNA-Seq.transcriptome.A.hg38 C3L-03378 HNSCC RNA-Seq tissue_normal CPT0199890009 ed07a9fb-a1f1-402a-a0de-fab047778a2c.rna_seq.transcriptome.gdc_realn.bam 11724699595 BAM transcriptome harmonized CPTAC3 85211d41-0e5a-46dd-a4c0-b44271418bcd 7e905dd662334b2cfcaa080931eb7ea9 { 'aliquot_tag': 'ALQ_1df44dce', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03378.RNA-Seq.transcriptome.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199880009 0816fbe5-a5b9-4278-97a8-45fc6a4abd8b.rna_seq.transcriptome.gdc_realn.bam 13006093053 BAM transcriptome harmonized CPTAC3 37eab4ae-5228-46e9-9ead-e0efa98ebbcb 346dc16538d8ae77fd4c4d904243f46e { 'aliquot_tag': 'ALQ_2094647e', 'gdc_sample_type': 'Primary Tumor' } +C3L-03378.RNA-Seq.transcriptome.T.hg38 C3L-03378 HNSCC RNA-Seq tumor CPT0199900011 305d1b5d-1311-4a67-8edf-426d163bd22e.rna_seq.transcriptome.gdc_realn.bam 8788647195 BAM transcriptome harmonized CPTAC3 a575149f-e180-452e-ab22-e548478cc8b0 3afb16e1dcfefafacd5ea769d6038203 { 'aliquot_tag': 'ALQ_cc784569', 'gdc_sample_type': 'Primary Tumor' } C3L-03378.WGS.N C3L-03378 HNSCC WGS blood_normal CPT0200430002 CPT0200430002.WholeGenome.RP-1303.bam 69597804536 BAM aligned CPTAC3 11a4e2e2-2300-4aa2-9ee2-57c6472b0c55 b5083a6966041934931a199c81a1cb2b { 'aliquot_tag': 'ALQ_40e2ea1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03378.WGS.N.hg38 C3L-03378 HNSCC WGS blood_normal CPT0200430002 d4fd14ea-995a-4030-b224-544874742c47_wgs_gdc_realn.bam 109146266405 BAM harmonized CPTAC3 ede9f162-9a03-4918-bb53-d4907388860e 9f755b8a4ff892418741219f88aa3a15 { 'aliquot_tag': 'ALQ_40e2ea1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03378.WGS.T C3L-03378 HNSCC WGS tumor CPT0199880006 CPT0199880006.WholeGenome.RP-1303.bam 69161062180 BAM aligned CPTAC3 2cd02f43-4783-4990-9e48-6c7777730304 e2e0142cddadb670cabf290f76c4f283 { 'aliquot_tag': 'ALQ_b02b79ef', 'gdc_sample_type': 'Primary Tumor' } @@ -13225,11 +14079,11 @@ C3L-03385.MethArray.Green.T C3L-03385 GBM Methylation Array tumor CPT0239860006 C3L-03385.MethArray.Red.T C3L-03385 GBM Methylation Array tumor CPT0239860006 204367490084_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 7bd922bd-4827-46be-b430-59a771ae6168 4e52ca91348a55ff6c64cb81678c1f60 { 'aliquot_tag': 'ALQ_a756e783', 'gdc_sample_type': 'Primary Tumor' } C3L-03385.miRNA-Seq.T C3L-03385 GBM miRNA-Seq tumor CPT0239860013 200526_UNC32-K00270_0248_BHH7WFBBXY_CGATGT_S7_L001_R1_001.unaln.bam 380895617 BAM unaligned CPTAC3 79b8f443-cb3f-491e-92ee-0fa93d0fe1cd fa84b0b0bce05fa4a47530b31493c085 { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor' } C3L-03385.miRNA-Seq.T.hg38 C3L-03385 GBM miRNA-Seq tumor CPT0239860013 e6fad453-db9d-466c-b35a-d4b2051bf395_mirnaseq_gdc_realn.bam 415432118 BAM harmonized CPTAC3 b4276839-8fa0-4b36-91ec-123ccf100dab 0c5454ac7c834028f0bb9dcf4ce0e5c3 { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03385.RNA-Seq.chimeric.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 058a2af4-2e1a-42e2-8c0e-ef2089320e51.rna_seq.chimeric.gdc_realn.bam 23629055 BAM chimeric harmonized CPTAC3 e5eb234a-115a-4c0f-a77a-083aa95d027e df56920569824ca09ec0c97321e35aae { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03385.RNA-Seq.genomic.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 058a2af4-2e1a-42e2-8c0e-ef2089320e51.rna_seq.genomic.gdc_realn.bam 7672558806 BAM genomic harmonized CPTAC3 db6a35a2-3feb-4226-916e-500da54a58f1 4aa781f0b0d8cb4f0aaba7f1c2d1f2b6 { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03385.RNA-Seq.R1_L005.T C3L-03385 GBM RNA-Seq tumor CPT0239860013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R1_001.fastq.gz 3722386896 FASTQ R1_L005 unaligned CPTAC3 fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1 a5292248c7498c1bfbd864f3b0e567d4 { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03385.RNA-Seq.R2_L005.T C3L-03385 GBM RNA-Seq tumor CPT0239860013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R2_001.fastq.gz 4036563635 FASTQ R2_L005 unaligned CPTAC3 bad51e82-edda-4dae-9ae2-a378a2c50866 cc1f4db229f124174205692fef638689 { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03385.RNA-Seq.transcriptome.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 058a2af4-2e1a-42e2-8c0e-ef2089320e51.rna_seq.transcriptome.gdc_realn.bam 8677116793 BAM transcriptome harmonized CPTAC3 fe173df8-43b8-4dc0-a455-e828c1d0dc0a eafdbc102ad7223b65cfbb4a35501746 { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03385.RNA-Seq.chimeric.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 a7237889-60ae-4b7f-975e-0a1bcd1ddaf9.rna_seq.chimeric.gdc_realn.bam 23618802 BAM chimeric harmonized CPTAC3 3a9d3af7-7aa2-4573-b8b2-b280d87fc18f 673e0f6c5216d4ece0fe9f6f12da3f6c { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03385.RNA-Seq.genomic.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 a7237889-60ae-4b7f-975e-0a1bcd1ddaf9.rna_seq.genomic.gdc_realn.bam 7673245866 BAM genomic harmonized CPTAC3 a9ed5897-bb28-40c8-9e57-bd1b8ad05f8f 916dd2d023f06d99a6e9494b983bf3ea { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03385.RNA-Seq.R1_L005.T C3L-03385 GBM RNA-Seq tumor CPT0239860013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R1_001.fastq.gz 3722386896 FASTQ R1_L005 unaligned CPTAC3 fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1 a5292248c7498c1bfbd864f3b0e567d4 { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-03385.RNA-Seq.R2_L005.T C3L-03385 GBM RNA-Seq tumor CPT0239860013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R2_001.fastq.gz 4036563635 FASTQ R2_L005 unaligned CPTAC3 bad51e82-edda-4dae-9ae2-a378a2c50866 cc1f4db229f124174205692fef638689 { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-03385.RNA-Seq.transcriptome.T.hg38 C3L-03385 GBM RNA-Seq tumor CPT0239860013 a7237889-60ae-4b7f-975e-0a1bcd1ddaf9.rna_seq.transcriptome.gdc_realn.bam 9931519995 BAM transcriptome harmonized CPTAC3 683e2963-a2c2-4872-b1b6-40c5f46f060b 4c340b0f4c129230cb02e5affbebbb6d { 'aliquot_tag': 'ALQ_ce27224d', 'gdc_sample_type': 'Primary Tumor' } C3L-03385.WGS.N C3L-03385 GBM WGS blood_normal CPT0240540002 CPT0240540002.WholeGenome.RP-2158.bam 24847212386 BAM aligned CPTAC3 347cc10e-8a2e-464b-95a8-46c9bf006c10 90391fd8422d260364fc6daeb7b1d4dc { 'aliquot_tag': 'ALQ_f9382fee', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03385.WGS.N.hg38 C3L-03385 GBM WGS blood_normal CPT0240540002 f13892e5-c2c7-44c2-84eb-9d1d70cd5508_wgs_gdc_realn.bam 70348014229 BAM harmonized CPTAC3 9ddf2838-9c6e-46f8-a6fe-7df5a229e159 d60ccc4c3cedf7bc33c293eebbb6edcc { 'aliquot_tag': 'ALQ_f9382fee', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03385.WGS.T C3L-03385 GBM WGS tumor CPT0239860006 CPT0239860006.WholeGenome.RP-2158.bam 23002457535 BAM aligned CPTAC3 e239e5f5-1111-4506-9c6f-45dde5665e7a 854b57a0e15dadf2454adfe0db6bb65f { 'aliquot_tag': 'ALQ_a756e783', 'gdc_sample_type': 'Primary Tumor' } @@ -13243,9 +14097,9 @@ C3L-03387.MethArray.Red.T C3L-03387 GBM Methylation Array tumor CPT0224330009 20 C3L-03387.miRNA-Seq.T C3L-03387 GBM miRNA-Seq tumor CPT0224330006 190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L006_R1_001.unaln.bam 306438351 BAM unaligned CPTAC3 668b7402-385a-4e7e-b67a-b0512613f1cf fc723295895b376338f1c8af37c6070f { 'aliquot_tag': 'ALQ_a80cf96e', 'gdc_sample_type': 'Primary Tumor' } C3L-03387.miRNA-Seq.T.hg38 C3L-03387 GBM miRNA-Seq tumor CPT0224330006 9e922a37-27de-4f89-87e2-e48174487e3d_mirnaseq_gdc_realn.bam 350297417 BAM harmonized CPTAC3 e442c697-c5a7-462d-82c8-8fd01fd1069a ebb17e626f374350ff68275275d2890f { 'aliquot_tag': 'ALQ_a80cf96e', 'gdc_sample_type': 'Primary Tumor' } C3L-03387.RNA-Seq.chimeric.T.hg38 C3L-03387 GBM RNA-Seq tumor CPT0224330006 705a7ed2-dd06-4197-a894-13c890deb29b.rna_seq.chimeric.gdc_realn.bam 43441468 BAM chimeric harmonized CPTAC3 3bd39ce0-4235-4c6e-9085-0e45434c9211 d9001cdf665c1d020733cf626dcebfe8 { 'aliquot_tag': 'ALQ_a80cf96e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03387.RNA-Seq.genomic.T.hg38 C3L-03387 GBM RNA-Seq tumor CPT0224330006 705a7ed2-dd06-4197-a894-13c890deb29b.rna_seq.genomic.gdc_realn.bam 8960958968 BAM genomic harmonized CPTAC3 84405eb3-6e27-4c45-808a-c5dd9bc36c7d 9b9a19580e1eb2f1e663a4523468c27a { 'aliquot_tag': 'ALQ_a80cf96e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03387.RNA-Seq.R1_L001.T C3L-03387 GBM RNA-Seq tumor CPT0224330006 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L001_R1_001.fastq.gz 4290080477 FASTQ R1_L001 unaligned CPTAC3 441a47fe-4c5f-4806-953e-859958409898 e515442df5761c431f72c09afb9f7877 { 'aliquot_tag': 'ALQ_a80cf96e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03387.RNA-Seq.R2_L001.T C3L-03387 GBM RNA-Seq tumor CPT0224330006 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L001_R2_001.fastq.gz 4709248929 FASTQ R2_L001 unaligned CPTAC3 843aca93-5c65-4532-8c3e-4281ae000aff e11ddb625334f25b7826e33aace0e44e { 'aliquot_tag': 'ALQ_a80cf96e', 'gdc_sample_type': 'Primary Tumor' } +C3L-03387.RNA-Seq.genomic.T.hg38 C3L-03387 GBM RNA-Seq tumor CPT0224330006 705a7ed2-dd06-4197-a894-13c890deb29b.rna_seq.genomic.gdc_realn.bam 8960958968 BAM genomic harmonized CPTAC3 b8c30c78-7c8a-4aa1-9627-550ca1084510 9b9a19580e1eb2f1e663a4523468c27a { 'aliquot_tag': 'ALQ_a80cf96e', 'gdc_sample_type': 'Primary Tumor' } +C3L-03387.RNA-Seq.R1_L001.T C3L-03387 GBM RNA-Seq tumor CPT0224330006 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L001_R1_001.fastq.gz 4290080477 FASTQ R1_L001 unaligned CPTAC3 441a47fe-4c5f-4806-953e-859958409898 e515442df5761c431f72c09afb9f7877 { 'aliquot_tag': 'ALQ_a80cf96e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-03387.RNA-Seq.R2_L001.T C3L-03387 GBM RNA-Seq tumor CPT0224330006 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L001_R2_001.fastq.gz 4709248929 FASTQ R2_L001 unaligned CPTAC3 843aca93-5c65-4532-8c3e-4281ae000aff e11ddb625334f25b7826e33aace0e44e { 'aliquot_tag': 'ALQ_a80cf96e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-03387.RNA-Seq.transcriptome.T.hg38 C3L-03387 GBM RNA-Seq tumor CPT0224330006 705a7ed2-dd06-4197-a894-13c890deb29b.rna_seq.transcriptome.gdc_realn.bam 10177705869 BAM transcriptome harmonized CPTAC3 f3c88c37-8dbb-4fd4-8d77-4b6d2a20d267 6abbf25cf93af35ba3d1a1fa67d37593 { 'aliquot_tag': 'ALQ_a80cf96e', 'gdc_sample_type': 'Primary Tumor' } C3L-03387.WGS.N C3L-03387 GBM WGS blood_normal CPT0226180002 CPT0226180002.WholeGenome.RP-1303.bam 50305187419 BAM aligned CPTAC3 a4addfa6-16cd-4ed4-abfc-20ada9fd1470 a8ec08b0b26acbde1db8d1f0c626f6f8 { 'aliquot_tag': 'ALQ_2e6bc44', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03387.WGS.N.hg38 C3L-03387 GBM WGS blood_normal CPT0226180002 4a22b011-e87f-4787-95a6-344797bb400c_wgs_gdc_realn.bam 72900382309 BAM harmonized CPTAC3 9ff7b3c7-589b-4c8b-b1f1-e24fb1c0a765 69b6c762bde62e687dd4816c473b7751 { 'aliquot_tag': 'ALQ_2e6bc44', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13262,9 +14116,9 @@ C3L-03388.MethArray.Red.T C3L-03388 PDA Methylation Array tumor CPT0239910007 20 C3L-03388.miRNA-Seq.T C3L-03388 PDA miRNA-Seq tumor CPT0239910010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATCACG_S24_L005_R1_001.unaln.bam 220226995 BAM unaligned CPTAC3 4ab26243-d9aa-4fa9-94ff-ce34e600ad97 6ccd39de403cbe6c70f2eb4a8ec08761 { 'aliquot_tag': 'ALQ_2e527c42', 'gdc_sample_type': 'Primary Tumor' } C3L-03388.miRNA-Seq.T.hg38 C3L-03388 PDA miRNA-Seq tumor CPT0239910010 20793ec0-af80-483e-ba5d-57612a270391_mirnaseq_gdc_realn.bam 247721626 BAM harmonized CPTAC3 39bcaeff-53d9-4fc3-9665-8793556d8eb7 218dd6c744fde5cab1659e571cf26030 { 'aliquot_tag': 'ALQ_2e527c42', 'gdc_sample_type': 'Primary Tumor' } C3L-03388.RNA-Seq.chimeric.T.hg38 C3L-03388 PDA RNA-Seq tumor CPT0239910010 22a9a8b4-4663-453c-a2e5-4acf366b3ce4.rna_seq.chimeric.gdc_realn.bam 39633306 BAM chimeric harmonized CPTAC3 5b351289-323f-4377-a2f9-22274af39a85 e56d1ff16c831d9682aa92bf3a3f422c { 'aliquot_tag': 'ALQ_2e527c42', 'gdc_sample_type': 'Primary Tumor' } -C3L-03388.RNA-Seq.genomic.T.hg38 C3L-03388 PDA RNA-Seq tumor CPT0239910010 22a9a8b4-4663-453c-a2e5-4acf366b3ce4.rna_seq.genomic.gdc_realn.bam 7973194279 BAM genomic harmonized CPTAC3 1750a539-8df4-43af-9309-28286b235257 8fa51047eaf4a9b4c4975e7bc90b58aa { 'aliquot_tag': 'ALQ_2e527c42', 'gdc_sample_type': 'Primary Tumor' } -C3L-03388.RNA-Seq.R1_L004.T C3L-03388 PDA RNA-Seq tumor CPT0239910010 190621_UNC32-K00270_0184_AH7CLLBBXY_ATATCTCG-ATCTTAGT_S14_L004_R1_001.fastq.gz 3579047573 FASTQ R1_L004 unaligned CPTAC3 a1924850-236c-4907-9300-b2171ab11e5d ee0b4e7d557a3f958656330501c4f68c { 'aliquot_tag': 'ALQ_2e527c42', 'gdc_sample_type': 'Primary Tumor' } -C3L-03388.RNA-Seq.R2_L004.T C3L-03388 PDA RNA-Seq tumor CPT0239910010 190621_UNC32-K00270_0184_AH7CLLBBXY_ATATCTCG-ATCTTAGT_S14_L004_R2_001.fastq.gz 4044364470 FASTQ R2_L004 unaligned CPTAC3 64d5bbe7-888e-4aba-bf57-85cc0d91d9bd 0e70341c126fee19b61fc94dc7718477 { 'aliquot_tag': 'ALQ_2e527c42', 'gdc_sample_type': 'Primary Tumor' } +C3L-03388.RNA-Seq.genomic.T.hg38 C3L-03388 PDA RNA-Seq tumor CPT0239910010 22a9a8b4-4663-453c-a2e5-4acf366b3ce4.rna_seq.genomic.gdc_realn.bam 7973194279 BAM genomic harmonized CPTAC3 7d02eba5-a44f-4ef5-8fe4-58af0ebd1ca1 8fa51047eaf4a9b4c4975e7bc90b58aa { 'aliquot_tag': 'ALQ_2e527c42', 'gdc_sample_type': 'Primary Tumor' } +C3L-03388.RNA-Seq.R1_L004.T C3L-03388 PDA RNA-Seq tumor CPT0239910010 190621_UNC32-K00270_0184_AH7CLLBBXY_ATATCTCG-ATCTTAGT_S14_L004_R1_001.fastq.gz 3579047573 FASTQ R1_L004 unaligned CPTAC3 a1924850-236c-4907-9300-b2171ab11e5d ee0b4e7d557a3f958656330501c4f68c { 'aliquot_tag': 'ALQ_2e527c42', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-03388.RNA-Seq.R2_L004.T C3L-03388 PDA RNA-Seq tumor CPT0239910010 190621_UNC32-K00270_0184_AH7CLLBBXY_ATATCTCG-ATCTTAGT_S14_L004_R2_001.fastq.gz 4044364470 FASTQ R2_L004 unaligned CPTAC3 64d5bbe7-888e-4aba-bf57-85cc0d91d9bd 0e70341c126fee19b61fc94dc7718477 { 'aliquot_tag': 'ALQ_2e527c42', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-03388.RNA-Seq.transcriptome.T.hg38 C3L-03388 PDA RNA-Seq tumor CPT0239910010 22a9a8b4-4663-453c-a2e5-4acf366b3ce4.rna_seq.transcriptome.gdc_realn.bam 10058377030 BAM transcriptome harmonized CPTAC3 278f93c1-cae5-4751-a660-d0c46900b4e5 e17d9fea4169579afdc8afd8c9b9ef2a { 'aliquot_tag': 'ALQ_2e527c42', 'gdc_sample_type': 'Primary Tumor' } C3L-03388.Targeted.T C3L-03388 PDA Targeted Sequencing tumor CPT0239910007 CPT0239910007.CustomSelection.RP-1303.PDO-18786.bam 5226091518 BAM aligned CPTAC3 a7843207-2d68-408c-8c81-90a36f5d610b 59e993cc38e3d512613dce2c0e54767f { 'aliquot_tag': 'ALQ_a92dd8a0', 'gdc_sample_type': 'Primary Tumor' } C3L-03388.Targeted.T.hg38 C3L-03388 PDA Targeted Sequencing tumor CPT0239910007 26f5781e-10b8-4069-8260-b68ea91c0148_targetedsequencing_gdc_realn.bam 7160865665 BAM harmonized CPTAC3 42dd686d-9960-4a6d-a648-d8852cf99bcb fd356b39b908866ca0d1b604a1dca132 { 'aliquot_tag': 'ALQ_a92dd8a0', 'gdc_sample_type': 'Primary Tumor' } @@ -13283,9 +14137,9 @@ C3L-03390.MethArray.Red.T C3L-03390 GBM Methylation Array tumor CPT0224390011 20 C3L-03390.miRNA-Seq.T C3L-03390 GBM miRNA-Seq tumor CPT0224390007 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGGCG_S33_L006_R1_001.unaln.bam 217915775 BAM unaligned CPTAC3 62b6f96c-5452-4340-a645-417daf6afc50 71c156e3879b817e42ef694fa987b722 { 'aliquot_tag': 'ALQ_95bbd159', 'gdc_sample_type': 'Primary Tumor' } C3L-03390.miRNA-Seq.T.hg38 C3L-03390 GBM miRNA-Seq tumor CPT0224390007 5c54c93d-0ec9-4bf4-971e-6ca452ab288c_mirnaseq_gdc_realn.bam 244686145 BAM harmonized CPTAC3 aba741d6-2e25-4497-b40a-eaf9f3ffaef8 15d515ce262e7d461ec887600d0b757b { 'aliquot_tag': 'ALQ_95bbd159', 'gdc_sample_type': 'Primary Tumor' } C3L-03390.RNA-Seq.chimeric.T.hg38 C3L-03390 GBM RNA-Seq tumor CPT0224390007 eadd55dc-faa4-4d64-886f-768190967ea3.rna_seq.chimeric.gdc_realn.bam 47822820 BAM chimeric harmonized CPTAC3 49983b02-c290-43cc-b255-21be7efc5856 ef63fd899474f9f1a60cb78a6e63048e { 'aliquot_tag': 'ALQ_95bbd159', 'gdc_sample_type': 'Primary Tumor' } -C3L-03390.RNA-Seq.genomic.T.hg38 C3L-03390 GBM RNA-Seq tumor CPT0224390007 eadd55dc-faa4-4d64-886f-768190967ea3.rna_seq.genomic.gdc_realn.bam 10085498850 BAM genomic harmonized CPTAC3 398d8b74-c0f3-4d93-985e-0b8619f28670 790994ed1bc7ed3894a99c720963b314 { 'aliquot_tag': 'ALQ_95bbd159', 'gdc_sample_type': 'Primary Tumor' } -C3L-03390.RNA-Seq.R1_L003.T C3L-03390 GBM RNA-Seq tumor CPT0224390007 190416_UNC32-K00270_0165_AH5JY2BBXY_TACCGAGG-CCTGAACT_S9_L003_R1_001.fastq.gz 4863781844 FASTQ R1_L003 unaligned CPTAC3 14b78975-bb11-45e4-bf3a-6231ae15c533 6569922b65b2b84abe2d19f2bbc0a385 { 'aliquot_tag': 'ALQ_95bbd159', 'gdc_sample_type': 'Primary Tumor' } -C3L-03390.RNA-Seq.R2_L003.T C3L-03390 GBM RNA-Seq tumor CPT0224390007 190416_UNC32-K00270_0165_AH5JY2BBXY_TACCGAGG-CCTGAACT_S9_L003_R2_001.fastq.gz 5588208336 FASTQ R2_L003 unaligned CPTAC3 f30d4502-0e7e-4f11-9f7d-0c329004b5a0 4b854575cd249247fb6e9eed38125003 { 'aliquot_tag': 'ALQ_95bbd159', 'gdc_sample_type': 'Primary Tumor' } +C3L-03390.RNA-Seq.genomic.T.hg38 C3L-03390 GBM RNA-Seq tumor CPT0224390007 eadd55dc-faa4-4d64-886f-768190967ea3.rna_seq.genomic.gdc_realn.bam 10085498850 BAM genomic harmonized CPTAC3 fab1b6e2-a283-4ff5-9384-3333bcef3d0c 790994ed1bc7ed3894a99c720963b314 { 'aliquot_tag': 'ALQ_95bbd159', 'gdc_sample_type': 'Primary Tumor' } +C3L-03390.RNA-Seq.R1_L003.T C3L-03390 GBM RNA-Seq tumor CPT0224390007 190416_UNC32-K00270_0165_AH5JY2BBXY_TACCGAGG-CCTGAACT_S9_L003_R1_001.fastq.gz 4863781844 FASTQ R1_L003 unaligned CPTAC3 14b78975-bb11-45e4-bf3a-6231ae15c533 6569922b65b2b84abe2d19f2bbc0a385 { 'aliquot_tag': 'ALQ_95bbd159', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-03390.RNA-Seq.R2_L003.T C3L-03390 GBM RNA-Seq tumor CPT0224390007 190416_UNC32-K00270_0165_AH5JY2BBXY_TACCGAGG-CCTGAACT_S9_L003_R2_001.fastq.gz 5588208336 FASTQ R2_L003 unaligned CPTAC3 f30d4502-0e7e-4f11-9f7d-0c329004b5a0 4b854575cd249247fb6e9eed38125003 { 'aliquot_tag': 'ALQ_95bbd159', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-03390.RNA-Seq.transcriptome.T.hg38 C3L-03390 GBM RNA-Seq tumor CPT0224390007 eadd55dc-faa4-4d64-886f-768190967ea3.rna_seq.transcriptome.gdc_realn.bam 12235347665 BAM transcriptome harmonized CPTAC3 a3325838-a6e4-4c04-bd94-3c735067aeb4 733e263ccf0f50696c6843abe6b39190 { 'aliquot_tag': 'ALQ_95bbd159', 'gdc_sample_type': 'Primary Tumor' } C3L-03390.WGS.N C3L-03390 GBM WGS blood_normal CPT0226190002 CPT0226190002.WholeGenome.RP-1303.bam 56285195181 BAM aligned CPTAC3 e7880621-0431-45f0-a58a-746bdbdeb8b1 cf9c14e795769212d071f119a7aeeb4b { 'aliquot_tag': 'ALQ_3f8695f4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03390.WGS.N.hg38 C3L-03390 GBM WGS blood_normal CPT0226190002 d9097320-6595-429e-8660-e663f114d0ee_wgs_gdc_realn.bam 83351438529 BAM harmonized CPTAC3 a9ce8457-208f-4107-99f2-3497084cfb8c 5162a4ca42436108c4d7f71dcfe960f6 { 'aliquot_tag': 'ALQ_3f8695f4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13301,8 +14155,8 @@ C3L-03392.miRNA-Seq.T C3L-03392 GBM miRNA-Seq tumor CPT0219080010 190228_UNC32-K C3L-03392.miRNA-Seq.T.hg38 C3L-03392 GBM miRNA-Seq tumor CPT0219080010 4600cb46-a833-4bfb-92da-bd91183872f3_mirnaseq_gdc_realn.bam 238309944 BAM harmonized CPTAC3 5da98d64-ce8f-4452-b9af-83cc36e5510b dcfdd503fb70ecc2fa86a7dab8c7faf4 { 'aliquot_tag': 'ALQ_46684886', 'gdc_sample_type': 'Primary Tumor' } C3L-03392.RNA-Seq.chimeric.T.hg38 C3L-03392 GBM RNA-Seq tumor CPT0219080010 a6ec82bd-3bcd-445f-9e78-7dd5f329df0d.rna_seq.chimeric.gdc_realn.bam 32289590 BAM chimeric harmonized CPTAC3 e03c27da-a6c2-4611-9643-936ac8f004da 7228cd9277f09c2e07184acd99b3a08e { 'aliquot_tag': 'ALQ_46684886', 'gdc_sample_type': 'Primary Tumor' } C3L-03392.RNA-Seq.genomic.T.hg38 C3L-03392 GBM RNA-Seq tumor CPT0219080010 a6ec82bd-3bcd-445f-9e78-7dd5f329df0d.rna_seq.genomic.gdc_realn.bam 8987482437 BAM genomic harmonized CPTAC3 1df3ced7-2403-41b4-9a3f-f28554cbadcd 7147007dd96c77ab4c29a35b08c04853 { 'aliquot_tag': 'ALQ_46684886', 'gdc_sample_type': 'Primary Tumor' } -C3L-03392.RNA-Seq.R1_L008.T C3L-03392 GBM RNA-Seq tumor CPT0219080010 180918_UNC31-K00269_0153_BHWNFCBBXX_GAGTGG_S30_L008_R1_001.fastq.gz 3680900354 FASTQ R1_L008 unaligned CPTAC3 6dd441ec-fb27-41f5-80b9-816dbeab8275 4c2bd75370171b65ecbed9a7e045454f { 'aliquot_tag': 'ALQ_46684886', 'gdc_sample_type': 'Primary Tumor' } -C3L-03392.RNA-Seq.R2_L008.T C3L-03392 GBM RNA-Seq tumor CPT0219080010 180918_UNC31-K00269_0153_BHWNFCBBXX_GAGTGG_S30_L008_R2_001.fastq.gz 3910349127 FASTQ R2_L008 unaligned CPTAC3 1335ed53-57d6-463c-82aa-af700b3b1553 822740b5ab69c3bcca84a26caa1297e2 { 'aliquot_tag': 'ALQ_46684886', 'gdc_sample_type': 'Primary Tumor' } +C3L-03392.RNA-Seq.R1_L008.T C3L-03392 GBM RNA-Seq tumor CPT0219080010 180918_UNC31-K00269_0153_BHWNFCBBXX_GAGTGG_S30_L008_R1_001.fastq.gz 3680900354 FASTQ R1_L008 unaligned CPTAC3 6dd441ec-fb27-41f5-80b9-816dbeab8275 4c2bd75370171b65ecbed9a7e045454f { 'aliquot_tag': 'ALQ_46684886', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-03392.RNA-Seq.R2_L008.T C3L-03392 GBM RNA-Seq tumor CPT0219080010 180918_UNC31-K00269_0153_BHWNFCBBXX_GAGTGG_S30_L008_R2_001.fastq.gz 3910349127 FASTQ R2_L008 unaligned CPTAC3 1335ed53-57d6-463c-82aa-af700b3b1553 822740b5ab69c3bcca84a26caa1297e2 { 'aliquot_tag': 'ALQ_46684886', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-03392.RNA-Seq.transcriptome.T.hg38 C3L-03392 GBM RNA-Seq tumor CPT0219080010 a6ec82bd-3bcd-445f-9e78-7dd5f329df0d.rna_seq.transcriptome.gdc_realn.bam 11321765097 BAM transcriptome harmonized CPTAC3 1e24c063-fed7-4dfe-8636-fe2c697ff4e9 18f1abab0917ce3f32d77254fcfbf7f4 { 'aliquot_tag': 'ALQ_46684886', 'gdc_sample_type': 'Primary Tumor' } C3L-03392.WGS.N C3L-03392 GBM WGS blood_normal CPT0220450002 CPT0220450002.WholeGenome.RP-1303.bam 63771051310 BAM aligned CPTAC3 31374716-6c9e-44bd-9cf7-26b9b6759f2e b80ae16db1d9fae7af0918aaf61f67ff { 'aliquot_tag': 'ALQ_c96bdc7c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03392.WGS.N.hg38 C3L-03392 GBM WGS blood_normal CPT0220450002 5d4b78a2-4914-4360-afee-3b4972851627_wgs_gdc_realn.bam 91133707316 BAM harmonized CPTAC3 015f04c9-ea83-461e-b589-16d23a1373f5 516a012dcb9fca39b5339fe6ef5a7f01 { 'aliquot_tag': 'ALQ_c96bdc7c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13319,9 +14173,9 @@ C3L-03394.MethArray.Red.T C3L-03394 PDA Methylation Array tumor CPT0224460007 20 C3L-03394.miRNA-Seq.T C3L-03394 PDA miRNA-Seq tumor CPT0224460010 190813_UNC32-K00270_0196_AH5MCWBBXY_CGATGT_S31_L004_R1_001.unaln.bam 268911384 BAM unaligned CPTAC3 5bfe37d7-0d13-4e68-a74a-08a325650f4e 677e50f77caf236e89e85c7d61ac8072 { 'aliquot_tag': 'ALQ_8d91d2d2', 'gdc_sample_type': 'Primary Tumor' } C3L-03394.miRNA-Seq.T.hg38 C3L-03394 PDA miRNA-Seq tumor CPT0224460010 bf997f28-674d-4404-b053-0d3b71365543_mirnaseq_gdc_realn.bam 307368018 BAM harmonized CPTAC3 973d2b64-00a5-4d2f-98ce-a95a963dd883 c023e9ac0c9a0295afac71c1de286fdb { 'aliquot_tag': 'ALQ_8d91d2d2', 'gdc_sample_type': 'Primary Tumor' } C3L-03394.RNA-Seq.chimeric.T.hg38 C3L-03394 PDA RNA-Seq tumor CPT0224460010 e2f3ddc4-0375-46c8-aa2c-e7aae5ae0f2d.rna_seq.chimeric.gdc_realn.bam 173679534 BAM chimeric harmonized CPTAC3 934bd5ad-79a1-4263-ab8e-abdd3eada3d8 108d82f17017d25bc8955ba710d043fd { 'aliquot_tag': 'ALQ_8d91d2d2', 'gdc_sample_type': 'Primary Tumor' } -C3L-03394.RNA-Seq.genomic.T.hg38 C3L-03394 PDA RNA-Seq tumor CPT0224460010 e2f3ddc4-0375-46c8-aa2c-e7aae5ae0f2d.rna_seq.genomic.gdc_realn.bam 11919073814 BAM genomic harmonized CPTAC3 bb518c61-dbc8-4fb3-9bf3-6891769ca2ac a19ed43ccb96a4a2929c5745b6e70ec1 { 'aliquot_tag': 'ALQ_8d91d2d2', 'gdc_sample_type': 'Primary Tumor' } -C3L-03394.RNA-Seq.R1_L008.T C3L-03394 PDA RNA-Seq tumor CPT0224460010 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L008_R1_001.fastq.gz 4407192011 FASTQ R1_L008 unaligned CPTAC3 e3888b98-9e02-4ba8-a9c3-9f0997c579fe 175a491f3d1ab50b78591e609e4167d1 { 'aliquot_tag': 'ALQ_8d91d2d2', 'gdc_sample_type': 'Primary Tumor' } -C3L-03394.RNA-Seq.R2_L008.T C3L-03394 PDA RNA-Seq tumor CPT0224460010 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L008_R2_001.fastq.gz 4500709300 FASTQ R2_L008 unaligned CPTAC3 e23e4e4c-16a8-4696-acd6-4b60cda0de5f 51563473da0936b7b6c706f4fcdb133a { 'aliquot_tag': 'ALQ_8d91d2d2', 'gdc_sample_type': 'Primary Tumor' } +C3L-03394.RNA-Seq.genomic.T.hg38 C3L-03394 PDA RNA-Seq tumor CPT0224460010 e2f3ddc4-0375-46c8-aa2c-e7aae5ae0f2d.rna_seq.genomic.gdc_realn.bam 11919073814 BAM genomic harmonized CPTAC3 e95e2227-7d9b-4b28-b1cc-a8f7dd1d009d a19ed43ccb96a4a2929c5745b6e70ec1 { 'aliquot_tag': 'ALQ_8d91d2d2', 'gdc_sample_type': 'Primary Tumor' } +C3L-03394.RNA-Seq.R1_L008.T C3L-03394 PDA RNA-Seq tumor CPT0224460010 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L008_R1_001.fastq.gz 4407192011 FASTQ R1_L008 unaligned CPTAC3 e3888b98-9e02-4ba8-a9c3-9f0997c579fe 175a491f3d1ab50b78591e609e4167d1 { 'aliquot_tag': 'ALQ_8d91d2d2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-03394.RNA-Seq.R2_L008.T C3L-03394 PDA RNA-Seq tumor CPT0224460010 190717_UNC31-K00269_0233_BH7HG5BBXY_GCGCTCTA-GCTCCGAC_S10_L008_R2_001.fastq.gz 4500709300 FASTQ R2_L008 unaligned CPTAC3 e23e4e4c-16a8-4696-acd6-4b60cda0de5f 51563473da0936b7b6c706f4fcdb133a { 'aliquot_tag': 'ALQ_8d91d2d2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-03394.RNA-Seq.transcriptome.T.hg38 C3L-03394 PDA RNA-Seq tumor CPT0224460010 e2f3ddc4-0375-46c8-aa2c-e7aae5ae0f2d.rna_seq.transcriptome.gdc_realn.bam 8807523120 BAM transcriptome harmonized CPTAC3 e48ea980-1288-43a4-baad-4848223699fc 06dd8b47387034699dda222f653cf30d { 'aliquot_tag': 'ALQ_8d91d2d2', 'gdc_sample_type': 'Primary Tumor' } C3L-03394.Targeted.T C3L-03394 PDA Targeted Sequencing tumor CPT0224460007 CPT0224460007.CustomSelection.RP-1303.PDO-18786.bam 5226646505 BAM aligned CPTAC3 93956038-3fbb-49a7-8776-0f56584287a8 0d3ac02f4648e79e4f8c236d0de4c021 { 'aliquot_tag': 'ALQ_aee7630', 'gdc_sample_type': 'Primary Tumor' } C3L-03394.Targeted.T.hg38 C3L-03394 PDA Targeted Sequencing tumor CPT0224460007 431abcdf-62b6-4732-9771-3256aa0dd9ac_targetedsequencing_gdc_realn.bam 7333257724 BAM harmonized CPTAC3 8fa1ce60-8191-49a6-8c52-d04081afda86 1b8aba33441be87a69d7b094e3b5e31e { 'aliquot_tag': 'ALQ_aee7630', 'gdc_sample_type': 'Primary Tumor' } @@ -13342,9 +14196,9 @@ C3L-03395.MethArray.Red.T C3L-03395 PDA Methylation Array tumor CPT0276010006 20 C3L-03395.miRNA-Seq.T C3L-03395 PDA miRNA-Seq tumor CPT0276010009 190813_UNC32-K00270_0196_AH5MCWBBXY_TACAGC_S26_L003_R1_001.unaln.bam 182692906 BAM unaligned CPTAC3 398799d9-a192-47ae-8f92-39db8d9748fb 54626fa20d7b625a5b9e2e469832f07e { 'aliquot_tag': 'ALQ_1b98da7c', 'gdc_sample_type': 'Primary Tumor' } C3L-03395.miRNA-Seq.T.hg38 C3L-03395 PDA miRNA-Seq tumor CPT0276010009 16746a0b-86d7-4ea3-a1b6-ac0546c9817f_mirnaseq_gdc_realn.bam 206536175 BAM harmonized CPTAC3 02f37894-31a7-4652-8308-c7adc26a68c7 0128674e00e2e9d7357f00e764d57981 { 'aliquot_tag': 'ALQ_1b98da7c', 'gdc_sample_type': 'Primary Tumor' } C3L-03395.RNA-Seq.chimeric.T.hg38 C3L-03395 PDA RNA-Seq tumor CPT0276010009 e1fa9d07-ccd9-467b-9bbc-440eb84d3e2a.rna_seq.chimeric.gdc_realn.bam 40845084 BAM chimeric harmonized CPTAC3 d970eaff-8a56-4812-b75b-e6820dd5baf3 87211913070bc8f6f839cdeeb2f361ce { 'aliquot_tag': 'ALQ_1b98da7c', 'gdc_sample_type': 'Primary Tumor' } -C3L-03395.RNA-Seq.genomic.T.hg38 C3L-03395 PDA RNA-Seq tumor CPT0276010009 e1fa9d07-ccd9-467b-9bbc-440eb84d3e2a.rna_seq.genomic.gdc_realn.bam 9600345071 BAM genomic harmonized CPTAC3 b0c84d4c-fb66-4c67-9f88-18d2bd10d9d1 2e40975013a968e6d2490af8ef36f602 { 'aliquot_tag': 'ALQ_1b98da7c', 'gdc_sample_type': 'Primary Tumor' } -C3L-03395.RNA-Seq.R1_L004.T C3L-03395 PDA RNA-Seq tumor CPT0276010009 190702_UNC32-K00270_0188_BH7CLJBBXY_AATGCCTC-TCGATCCA_S15_L004_R1_001.fastq.gz 4237385037 FASTQ R1_L004 unaligned CPTAC3 0750a61a-81eb-4579-9497-2769252187dd 5055ef7ea4c4bdae6b0371d7541ab155 { 'aliquot_tag': 'ALQ_1b98da7c', 'gdc_sample_type': 'Primary Tumor' } -C3L-03395.RNA-Seq.R2_L004.T C3L-03395 PDA RNA-Seq tumor CPT0276010009 190702_UNC32-K00270_0188_BH7CLJBBXY_AATGCCTC-TCGATCCA_S15_L004_R2_001.fastq.gz 4907359123 FASTQ R2_L004 unaligned CPTAC3 41738e5a-a6b4-4fec-8236-77c1c1541095 a59393c55a3ec7a2313e526eb0a7f57a { 'aliquot_tag': 'ALQ_1b98da7c', 'gdc_sample_type': 'Primary Tumor' } +C3L-03395.RNA-Seq.genomic.T.hg38 C3L-03395 PDA RNA-Seq tumor CPT0276010009 e1fa9d07-ccd9-467b-9bbc-440eb84d3e2a.rna_seq.genomic.gdc_realn.bam 9600345071 BAM genomic harmonized CPTAC3 5571151e-d599-4879-ac3d-8b799251dda6 2e40975013a968e6d2490af8ef36f602 { 'aliquot_tag': 'ALQ_1b98da7c', 'gdc_sample_type': 'Primary Tumor' } +C3L-03395.RNA-Seq.R1_L004.T C3L-03395 PDA RNA-Seq tumor CPT0276010009 190702_UNC32-K00270_0188_BH7CLJBBXY_AATGCCTC-TCGATCCA_S15_L004_R1_001.fastq.gz 4237385037 FASTQ R1_L004 unaligned CPTAC3 0750a61a-81eb-4579-9497-2769252187dd 5055ef7ea4c4bdae6b0371d7541ab155 { 'aliquot_tag': 'ALQ_1b98da7c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-03395.RNA-Seq.R2_L004.T C3L-03395 PDA RNA-Seq tumor CPT0276010009 190702_UNC32-K00270_0188_BH7CLJBBXY_AATGCCTC-TCGATCCA_S15_L004_R2_001.fastq.gz 4907359123 FASTQ R2_L004 unaligned CPTAC3 41738e5a-a6b4-4fec-8236-77c1c1541095 a59393c55a3ec7a2313e526eb0a7f57a { 'aliquot_tag': 'ALQ_1b98da7c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-03395.RNA-Seq.transcriptome.T.hg38 C3L-03395 PDA RNA-Seq tumor CPT0276010009 e1fa9d07-ccd9-467b-9bbc-440eb84d3e2a.rna_seq.transcriptome.gdc_realn.bam 12246004788 BAM transcriptome harmonized CPTAC3 2a92e793-ebd9-4b67-a94a-d6e85c6276da dec9ba21afc79f974371a34e9aacfe18 { 'aliquot_tag': 'ALQ_1b98da7c', 'gdc_sample_type': 'Primary Tumor' } C3L-03395.Targeted.T C3L-03395 PDA Targeted Sequencing tumor CPT0276010006 CPT0276010006.CustomSelection.RP-1303.PDO-18786.bam 4580467288 BAM aligned CPTAC3 ae3c69ea-6cdf-4aa8-86a3-f00506992493 4f37b44e2d9380cf90b10cb1b41a1f4c { 'aliquot_tag': 'ALQ_8b27c7ed', 'gdc_sample_type': 'Primary Tumor' } C3L-03395.Targeted.T.hg38 C3L-03395 PDA Targeted Sequencing tumor CPT0276010006 6c385d7e-9b75-4b98-92f8-903fd6337d95_targetedsequencing_gdc_realn.bam 6464477728 BAM harmonized CPTAC3 ced2ea66-2409-4c23-a343-51dc874ef10b 5e049bc80024db607368e4140a4bae1a { 'aliquot_tag': 'ALQ_8b27c7ed', 'gdc_sample_type': 'Primary Tumor' } @@ -13364,8 +14218,8 @@ C3L-03400.miRNA-Seq.T C3L-03400 GBM miRNA-Seq tumor CPT0224540007 190228_UNC32-K C3L-03400.miRNA-Seq.T.hg38 C3L-03400 GBM miRNA-Seq tumor CPT0224540007 7d6319dc-ad4a-4903-a45c-c1fa25f77998_mirnaseq_gdc_realn.bam 282332942 BAM harmonized CPTAC3 ab2eb35d-73a4-44fc-bb89-9dff31a5fb5e 2ce58dc2c8138e028b199aa530bb34a9 { 'aliquot_tag': 'ALQ_bb72f6f5', 'gdc_sample_type': 'Primary Tumor' } C3L-03400.RNA-Seq.chimeric.T.hg38 C3L-03400 GBM RNA-Seq tumor CPT0224540007 09c4a41f-bd36-4012-af42-bcce4e7aa622.rna_seq.chimeric.gdc_realn.bam 36844540 BAM chimeric harmonized CPTAC3 dee27a45-2585-4466-8094-ef98c267a351 34524317f0e60720fd4fbc3d39633866 { 'aliquot_tag': 'ALQ_bb72f6f5', 'gdc_sample_type': 'Primary Tumor' } C3L-03400.RNA-Seq.genomic.T.hg38 C3L-03400 GBM RNA-Seq tumor CPT0224540007 09c4a41f-bd36-4012-af42-bcce4e7aa622.rna_seq.genomic.gdc_realn.bam 8452363970 BAM genomic harmonized CPTAC3 2949138f-db82-434c-9275-2a025e3811cf cee673a6a2b87702588ed4f47a174853 { 'aliquot_tag': 'ALQ_bb72f6f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-03400.RNA-Seq.R1_L003.T C3L-03400 GBM RNA-Seq tumor CPT0224540007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGTTAGAA-TTCAGGTC_S11_L003_R1_001.fastq.gz 3706034638 FASTQ R1_L003 unaligned CPTAC3 70531ebf-08c9-4f56-aa0a-52c009c298f4 03f5b8c14d526beebd5dd2aaf5111318 { 'aliquot_tag': 'ALQ_bb72f6f5', 'gdc_sample_type': 'Primary Tumor' } -C3L-03400.RNA-Seq.R2_L003.T C3L-03400 GBM RNA-Seq tumor CPT0224540007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGTTAGAA-TTCAGGTC_S11_L003_R2_001.fastq.gz 4240652850 FASTQ R2_L003 unaligned CPTAC3 642ffec8-e51b-42da-a88f-a3db6ad879e2 9bf49ac3db4759453125319b1f5ce8da { 'aliquot_tag': 'ALQ_bb72f6f5', 'gdc_sample_type': 'Primary Tumor' } +C3L-03400.RNA-Seq.R1_L003.T C3L-03400 GBM RNA-Seq tumor CPT0224540007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGTTAGAA-TTCAGGTC_S11_L003_R1_001.fastq.gz 3706034638 FASTQ R1_L003 unaligned CPTAC3 70531ebf-08c9-4f56-aa0a-52c009c298f4 03f5b8c14d526beebd5dd2aaf5111318 { 'aliquot_tag': 'ALQ_bb72f6f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-03400.RNA-Seq.R2_L003.T C3L-03400 GBM RNA-Seq tumor CPT0224540007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGTTAGAA-TTCAGGTC_S11_L003_R2_001.fastq.gz 4240652850 FASTQ R2_L003 unaligned CPTAC3 642ffec8-e51b-42da-a88f-a3db6ad879e2 9bf49ac3db4759453125319b1f5ce8da { 'aliquot_tag': 'ALQ_bb72f6f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-03400.RNA-Seq.transcriptome.T.hg38 C3L-03400 GBM RNA-Seq tumor CPT0224540007 09c4a41f-bd36-4012-af42-bcce4e7aa622.rna_seq.transcriptome.gdc_realn.bam 10269507507 BAM transcriptome harmonized CPTAC3 606da76d-aee1-4532-90fd-4e7096553748 6f5779d3133a526108765176b838599d { 'aliquot_tag': 'ALQ_bb72f6f5', 'gdc_sample_type': 'Primary Tumor' } C3L-03400.WGS.N C3L-03400 GBM WGS blood_normal CPT0226220002 CPT0226220002.WholeGenome.RP-1303.bam 67662788509 BAM aligned CPTAC3 04360ecd-5fed-445e-9c1c-0964f8355df9 97a59f05b884330d03b794f9dfc9b07e { 'aliquot_tag': 'ALQ_cec2d64b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03400.WGS.N.hg38 C3L-03400 GBM WGS blood_normal CPT0226220002 8fe75c1a-636f-4248-b8d3-63ece1e9c2fb_wgs_gdc_realn.bam 98876232389 BAM harmonized CPTAC3 27ef4fff-c92d-461f-aaf5-ab3f31c0a342 791c0d257096d7d53392611b9829f2af { 'aliquot_tag': 'ALQ_cec2d64b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13380,12 +14234,12 @@ C3L-03405.MethArray.Red.T C3L-03405 GBM Methylation Array tumor CPT0224600009 20 C3L-03405.miRNA-Seq.T C3L-03405 GBM miRNA-Seq tumor CPT0224600006 190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L006_R1_001.unaln.bam 255754624 BAM unaligned CPTAC3 6433841e-eb0f-4d57-a640-892f9fa316f7 02b6923eab12b068beae096a7e66ebf2 { 'aliquot_tag': 'ALQ_bf61120d', 'gdc_sample_type': 'Primary Tumor' } C3L-03405.miRNA-Seq.T.hg38 C3L-03405 GBM miRNA-Seq tumor CPT0224600006 e6b6728a-f563-4926-b61d-f68ac7450ff3_mirnaseq_gdc_realn.bam 288212005 BAM harmonized CPTAC3 c89e9b44-9f59-4b9f-8b06-efd999cafc62 9bbf785a3d7527ef971741954ce0a550 { 'aliquot_tag': 'ALQ_bf61120d', 'gdc_sample_type': 'Primary Tumor' } C3L-03405.RNA-Seq.chimeric.T.hg38 C3L-03405 GBM RNA-Seq tumor CPT0224600006 d51652aa-0acf-483e-a90e-6d6dee0a86a8.rna_seq.chimeric.gdc_realn.bam 40830059 BAM chimeric harmonized CPTAC3 924ee0ec-733b-4b77-af9e-e8019a360bad 44542f71c2525a464a6925f509293c12 { 'aliquot_tag': 'ALQ_bf61120d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03405.RNA-Seq.genomic.T.hg38 C3L-03405 GBM RNA-Seq tumor CPT0224600006 d51652aa-0acf-483e-a90e-6d6dee0a86a8.rna_seq.genomic.gdc_realn.bam 8607763269 BAM genomic harmonized CPTAC3 6f273ad9-5a82-4267-afd6-ad9d2af96a20 d4e9ed7b237494450605afeeb3faeb6b { 'aliquot_tag': 'ALQ_bf61120d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03405.RNA-Seq.R1_L003.T C3L-03405 GBM RNA-Seq tumor CPT0224600006 190416_UNC32-K00270_0165_AH5JY2BBXY_AGCCTCAT-AGTAGAGA_S10_L003_R1_001.fastq.gz 4225515484 FASTQ R1_L003 unaligned CPTAC3 9cac0fc4-002c-49e6-b009-08e3a79f147a 05c8417cd5b9f75b3d25886724dff374 { 'aliquot_tag': 'ALQ_bf61120d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03405.RNA-Seq.R2_L003.T C3L-03405 GBM RNA-Seq tumor CPT0224600006 190416_UNC32-K00270_0165_AH5JY2BBXY_AGCCTCAT-AGTAGAGA_S10_L003_R2_001.fastq.gz 4668539169 FASTQ R2_L003 unaligned CPTAC3 6e72bfb7-d0de-4f03-821d-673d90b9eb8c 2ae475fe406c8bd65020a7ddc77062ef { 'aliquot_tag': 'ALQ_bf61120d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03405.RNA-Seq.genomic.T.hg38 C3L-03405 GBM RNA-Seq tumor CPT0224600006 d51652aa-0acf-483e-a90e-6d6dee0a86a8.rna_seq.genomic.gdc_realn.bam 8607763269 BAM genomic harmonized CPTAC3 0e450538-0f66-415e-a783-7d61fc967b37 d4e9ed7b237494450605afeeb3faeb6b { 'aliquot_tag': 'ALQ_bf61120d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03405.RNA-Seq.R1_L003.T C3L-03405 GBM RNA-Seq tumor CPT0224600006 190416_UNC32-K00270_0165_AH5JY2BBXY_AGCCTCAT-AGTAGAGA_S10_L003_R1_001.fastq.gz 4225515484 FASTQ R1_L003 unaligned CPTAC3 9cac0fc4-002c-49e6-b009-08e3a79f147a 05c8417cd5b9f75b3d25886724dff374 { 'aliquot_tag': 'ALQ_bf61120d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-03405.RNA-Seq.R2_L003.T C3L-03405 GBM RNA-Seq tumor CPT0224600006 190416_UNC32-K00270_0165_AH5JY2BBXY_AGCCTCAT-AGTAGAGA_S10_L003_R2_001.fastq.gz 4668539169 FASTQ R2_L003 unaligned CPTAC3 6e72bfb7-d0de-4f03-821d-673d90b9eb8c 2ae475fe406c8bd65020a7ddc77062ef { 'aliquot_tag': 'ALQ_bf61120d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-03405.RNA-Seq.transcriptome.T.hg38 C3L-03405 GBM RNA-Seq tumor CPT0224600006 d51652aa-0acf-483e-a90e-6d6dee0a86a8.rna_seq.transcriptome.gdc_realn.bam 9727472388 BAM transcriptome harmonized CPTAC3 d8204bf6-7699-4b6f-a04f-13855ef90283 657a3d19603c38d89f09473455e9f604 { 'aliquot_tag': 'ALQ_bf61120d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03405.scRNA-Seq.R1_L002.T C3L-03405 GBM scRNA-Seq tumor CPT0224600013 20191220_WUSTL_CPT0224600013_TAGGATAA-CCTTTGTC-GTACGCGG-AGCACACT_S5_L002_R1_001.fastq.gz 12671364384 FASTQ R1_L002 unaligned CPTAC3 43e57336-d3c7-46a8-81de-b42300b8e839 4fd6c918169df97615f47784690031b5 { 'aliquot_tag': 'ALQ_d610d7c3', 'gdc_sample_type': 'Primary Tumor' } -C3L-03405.scRNA-Seq.R2_L002.T C3L-03405 GBM scRNA-Seq tumor CPT0224600013 20191220_WUSTL_CPT0224600013_TAGGATAA-CCTTTGTC-GTACGCGG-AGCACACT_S5_L002_R2_001.fastq.gz 26167417692 FASTQ R2_L002 unaligned CPTAC3 184382d4-821c-40b1-9f60-51bfc3802a6b 55a54e58f07cb31a4e3f66cf3018b285 { 'aliquot_tag': 'ALQ_d610d7c3', 'gdc_sample_type': 'Primary Tumor' } +C3L-03405.scRNA-Seq.R1_L002.T C3L-03405 GBM scRNA-Seq tumor CPT0224600013 20191220_WUSTL_CPT0224600013_TAGGATAA-CCTTTGTC-GTACGCGG-AGCACACT_S5_L002_R1_001.fastq.gz 12671364384 FASTQ R1_L002 unaligned CPTAC3 43e57336-d3c7-46a8-81de-b42300b8e839 4fd6c918169df97615f47784690031b5 { 'aliquot_tag': 'ALQ_d610d7c3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-03405.scRNA-Seq.R2_L002.T C3L-03405 GBM scRNA-Seq tumor CPT0224600013 20191220_WUSTL_CPT0224600013_TAGGATAA-CCTTTGTC-GTACGCGG-AGCACACT_S5_L002_R2_001.fastq.gz 26167417692 FASTQ R2_L002 unaligned CPTAC3 184382d4-821c-40b1-9f60-51bfc3802a6b 55a54e58f07cb31a4e3f66cf3018b285 { 'aliquot_tag': 'ALQ_d610d7c3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3L-03405.scRNA-Seq.T.hg38 C3L-03405 GBM scRNA-Seq tumor CPT0224600013 possorted_genome_bam.bam 36827067033 BAM harmonized CPTAC3 271662dd-63fb-4109-8e2a-d6f5bae3e1f6 fd4f85577a2bc8778e31dd9b9198da24 { 'aliquot_tag': 'ALQ_d610d7c3', 'gdc_sample_type': 'Primary Tumor' } C3L-03405.WGS.N C3L-03405 GBM WGS blood_normal CPT0226240002 CPT0226240002.WholeGenome.RP-1303.bam 68922224835 BAM aligned CPTAC3 24756334-9a9c-4858-a1cd-7ee5372a812e fbf9adf0ab4bb762ecdc1397f5d56159 { 'aliquot_tag': 'ALQ_418223eb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03405.WGS.N.hg38 C3L-03405 GBM WGS blood_normal CPT0226240002 403a82f6-1996-4dc4-807e-60dfeb23d36c_wgs_gdc_realn.bam 100015884430 BAM harmonized CPTAC3 b380a40e-9f97-46f5-b417-ab8df4fbacb5 df8da9780ef47c9e19f0fe6242260cc5 { 'aliquot_tag': 'ALQ_418223eb', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13400,9 +14254,9 @@ C3L-03407.MethArray.Red.T C3L-03407 GBM Methylation Array tumor CPT0190360007 20 C3L-03407.miRNA-Seq.T C3L-03407 GBM miRNA-Seq tumor CPT0190360010 181219_UNC31-K00269_0173_BHYGJJBBXX_CGGAAT_S36_L004_R1_001.unaln.bam 201515266 BAM unaligned CPTAC3 1f03add2-e921-45a8-9bd7-9c9d2fb70085 8bf65f850f0a3ff46b17138ccba4ee35 { 'aliquot_tag': 'ALQ_3ce6ea', 'gdc_sample_type': 'Primary Tumor' } C3L-03407.miRNA-Seq.T.hg38 C3L-03407 GBM miRNA-Seq tumor CPT0190360010 98b724d6-8b97-47f6-9dff-762d539e78ad_mirnaseq_gdc_realn.bam 222895872 BAM harmonized CPTAC3 71bd7855-ff4d-4736-b8ee-45e8610da5c0 9a0ba5c8105b9f97ab797ab331896e08 { 'aliquot_tag': 'ALQ_3ce6ea', 'gdc_sample_type': 'Primary Tumor' } C3L-03407.RNA-Seq.chimeric.T.hg38 C3L-03407 GBM RNA-Seq tumor CPT0190360010 dd08dd11-37ef-4739-a2df-ff78ff930368.rna_seq.chimeric.gdc_realn.bam 236977214 BAM chimeric harmonized CPTAC3 18ab21b5-0eed-412c-9abf-ac22e7450a35 f9bcfaea75e4bd9d7166e77e36866dcb { 'aliquot_tag': 'ALQ_3ce6ea', 'gdc_sample_type': 'Primary Tumor' } -C3L-03407.RNA-Seq.genomic.T.hg38 C3L-03407 GBM RNA-Seq tumor CPT0190360010 dd08dd11-37ef-4739-a2df-ff78ff930368.rna_seq.genomic.gdc_realn.bam 7596564006 BAM genomic harmonized CPTAC3 6b90e86f-b16d-47c5-be38-7ca8fd0e2f09 a34dfa7194045373bd8aa10678f25521 { 'aliquot_tag': 'ALQ_3ce6ea', 'gdc_sample_type': 'Primary Tumor' } -C3L-03407.RNA-Seq.R1_L004.T C3L-03407 GBM RNA-Seq tumor CPT0190360010 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L004_R1_001.fastq.gz 3311998605 FASTQ R1_L004 unaligned CPTAC3 8078474f-74ce-4a21-a1c6-28c2f33c7b82 ceb3c564458688d7bad078fc6339dd3d { 'aliquot_tag': 'ALQ_3ce6ea', 'gdc_sample_type': 'Primary Tumor' } -C3L-03407.RNA-Seq.R2_L004.T C3L-03407 GBM RNA-Seq tumor CPT0190360010 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L004_R2_001.fastq.gz 3485263834 FASTQ R2_L004 unaligned CPTAC3 00ca5043-9ebf-4436-a321-bb9576d0723c 826f16235b280ff192af00729c49effd { 'aliquot_tag': 'ALQ_3ce6ea', 'gdc_sample_type': 'Primary Tumor' } +C3L-03407.RNA-Seq.genomic.T.hg38 C3L-03407 GBM RNA-Seq tumor CPT0190360010 dd08dd11-37ef-4739-a2df-ff78ff930368.rna_seq.genomic.gdc_realn.bam 7596564006 BAM genomic harmonized CPTAC3 64ac6dd1-66c6-45af-ac9c-e1cc26fa925e a34dfa7194045373bd8aa10678f25521 { 'aliquot_tag': 'ALQ_3ce6ea', 'gdc_sample_type': 'Primary Tumor' } +C3L-03407.RNA-Seq.R1_L004.T C3L-03407 GBM RNA-Seq tumor CPT0190360010 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L004_R1_001.fastq.gz 3311998605 FASTQ R1_L004 unaligned CPTAC3 8078474f-74ce-4a21-a1c6-28c2f33c7b82 ceb3c564458688d7bad078fc6339dd3d { 'aliquot_tag': 'ALQ_3ce6ea', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-03407.RNA-Seq.R2_L004.T C3L-03407 GBM RNA-Seq tumor CPT0190360010 190125_UNC31-K00269_0184_AH3M32BBXY_AGTCAA_S11_L004_R2_001.fastq.gz 3485263834 FASTQ R2_L004 unaligned CPTAC3 00ca5043-9ebf-4436-a321-bb9576d0723c 826f16235b280ff192af00729c49effd { 'aliquot_tag': 'ALQ_3ce6ea', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-03407.RNA-Seq.transcriptome.T.hg38 C3L-03407 GBM RNA-Seq tumor CPT0190360010 dd08dd11-37ef-4739-a2df-ff78ff930368.rna_seq.transcriptome.gdc_realn.bam 9400170014 BAM transcriptome harmonized CPTAC3 ecda9804-4a23-43c4-b5c9-423bc03bc67e 48eec3d34f2e2256f6c4818b84efd647 { 'aliquot_tag': 'ALQ_3ce6ea', 'gdc_sample_type': 'Primary Tumor' } C3L-03407.WGS.N C3L-03407 GBM WGS blood_normal CPT0191160002 CPT0191160002.WholeGenome.RP-1303.bam 64750280441 BAM aligned CPTAC3 975f974b-9217-4ab9-b951-3ceb455d88bc 9bcbfbb20a89a2a9023bad484e2712dc { 'aliquot_tag': 'ALQ_1c961c38', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03407.WGS.N.hg38 C3L-03407 GBM WGS blood_normal CPT0191160002 4f757bbc-1252-4331-aad8-a2a73e7fd008_wgs_gdc_realn.bam 92980568150 BAM harmonized CPTAC3 fda424ce-c105-499d-b8c1-f90fee8971ac 79c2d73b6baf3b8176e4acec5637e7f2 { 'aliquot_tag': 'ALQ_1c961c38', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13420,16 +14274,16 @@ C3L-03462.miRNA-Seq.A C3L-03462 LUAD miRNA-Seq tissue_normal CPT0190090010 19071 C3L-03462.miRNA-Seq.A.hg38 C3L-03462 LUAD miRNA-Seq tissue_normal CPT0190090010 9f5c34ab-2b13-421e-98b3-07e333e53ab4_mirnaseq_gdc_realn.bam 258738298 BAM harmonized CPTAC3 8e292fc5-3fdf-4fb4-9355-eb8f08c1764e 4ef615364b938ed272b41d7db56452de { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03462.miRNA-Seq.T C3L-03462 LUAD miRNA-Seq tumor CPT0190070009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTGAAA_S15_L005_R1_001.unaln.bam 218410953 BAM unaligned CPTAC3 4ca8627b-a115-42dd-9458-717d9776214e 454d846a7ff92dfd7595c869fb779207 { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor' } C3L-03462.miRNA-Seq.T.hg38 C3L-03462 LUAD miRNA-Seq tumor CPT0190070009 127a83eb-13c2-4660-9dbc-20e8fa5ebc26_mirnaseq_gdc_realn.bam 241571355 BAM harmonized CPTAC3 aba3eb5b-e695-4d29-8b54-a2ba660c5e4f 60b7428ecfe068b5374ec95becb13f81 { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor' } -C3L-03462.RNA-Seq.chimeric.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 5c7c4432-4a73-4ca4-907d-8a4619c3f014.rna_seq.chimeric.gdc_realn.bam 161147502 BAM chimeric harmonized CPTAC3 5a12703b-6846-426c-a431-730855d07fff 720d4168c5ad3ea6e3b0f65fce793a3e { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03462.RNA-Seq.chimeric.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 24064a54-01c4-45c5-b5e3-cc5ece5e15ea.rna_seq.chimeric.gdc_realn.bam 56180947 BAM chimeric harmonized CPTAC3 3134a4db-54b7-484d-9fd3-a912ff3cbfcb 330c57b1dc7fd85a07f8d2ebf33e3be7 { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor' } -C3L-03462.RNA-Seq.genomic.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 5c7c4432-4a73-4ca4-907d-8a4619c3f014.rna_seq.genomic.gdc_realn.bam 14723746386 BAM genomic harmonized CPTAC3 4c8513f6-1220-4da1-a634-c956b363b853 16d521d7d4174e0087c7f9c4d77ae34b { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03462.RNA-Seq.genomic.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 24064a54-01c4-45c5-b5e3-cc5ece5e15ea.rna_seq.genomic.gdc_realn.bam 14584561042 BAM genomic harmonized CPTAC3 65eb168c-797c-4615-ba46-2b72b4d269df b394624fea231b692ac015c0b823492d { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor' } -C3L-03462.RNA-Seq.R1_L002.A C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 190702_UNC32-K00270_0187_AH7FK2BBXY_TGGATCGA-GTGCGATA_S7_L002_R1_001.fastq.gz 5609424626 FASTQ R1_L002 unaligned CPTAC3 08f42aaf-e92e-4cdb-8cad-cf7ba704a416 8dcde62436f27099681c92cc70ba3902 { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03462.RNA-Seq.R1_L002.T C3L-03462 LUAD RNA-Seq tumor CPT0190070009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGTAAGT-ACTCTATG_S8_L002_R1_001.fastq.gz 4816010569 FASTQ R1_L002 unaligned CPTAC3 ea36bf78-e9fe-46b3-90a2-9d279423087b a4e9cd1cf06ad05585b287570c56a9e6 { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor' } -C3L-03462.RNA-Seq.R2_L002.A C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 190702_UNC32-K00270_0187_AH7FK2BBXY_TGGATCGA-GTGCGATA_S7_L002_R2_001.fastq.gz 6122059962 FASTQ R2_L002 unaligned CPTAC3 a7e6797e-a229-4708-9d39-2b9a48c52c94 293a58593853853356cfe3445d561164 { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03462.RNA-Seq.R2_L002.T C3L-03462 LUAD RNA-Seq tumor CPT0190070009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGTAAGT-ACTCTATG_S8_L002_R2_001.fastq.gz 5406571725 FASTQ R2_L002 unaligned CPTAC3 b949d047-6693-4f02-b7e2-f60b42df43c7 b27320d24d77721bdab152d98162e029 { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor' } -C3L-03462.RNA-Seq.transcriptome.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 5c7c4432-4a73-4ca4-907d-8a4619c3f014.rna_seq.transcriptome.gdc_realn.bam 10455657892 BAM transcriptome harmonized CPTAC3 74e5e0c6-c16d-41bc-86f7-28bc10e76c6c aa3076d7451c9142d3536f3a0f8d8b0b { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03462.RNA-Seq.transcriptome.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 24064a54-01c4-45c5-b5e3-cc5ece5e15ea.rna_seq.transcriptome.gdc_realn.bam 10238327891 BAM transcriptome harmonized CPTAC3 3d27c443-4734-42c7-b08e-dcabdfbfa0cc 33bd246d364d58d91cf656882fc9bc82 { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor' } +C3L-03462.RNA-Seq.chimeric.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 ec8a0ca0-a47c-4071-8089-f21f12f4dca4.rna_seq.chimeric.gdc_realn.bam 161126485 BAM chimeric harmonized CPTAC3 2eb5ee28-669a-4d9c-844d-7f729be2a206 32ef731824461993629aa76e9c2adcf2 { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03462.RNA-Seq.chimeric.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 fd0be5aa-c457-44c3-a552-3cf1db3a67ad.rna_seq.chimeric.gdc_realn.bam 56184337 BAM chimeric harmonized CPTAC3 7cd9e87f-be28-46ee-975a-a4365d81a506 c33489deaf19e0278e74d73764f33e43 { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor' } +C3L-03462.RNA-Seq.genomic.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 ec8a0ca0-a47c-4071-8089-f21f12f4dca4.rna_seq.genomic.gdc_realn.bam 14724923823 BAM genomic harmonized CPTAC3 51a65e2b-e28c-4716-afdd-b73c0ebbcc34 6ad72c211b25edc9c8fdd9ef399df6fc { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03462.RNA-Seq.genomic.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 fd0be5aa-c457-44c3-a552-3cf1db3a67ad.rna_seq.genomic.gdc_realn.bam 14586256475 BAM genomic harmonized CPTAC3 a387addc-4689-485f-9c36-01432874cd9a 7b978837491da4e118d1c06dddfd32dc { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor' } +C3L-03462.RNA-Seq.R1_L002.A C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 190702_UNC32-K00270_0187_AH7FK2BBXY_TGGATCGA-GTGCGATA_S7_L002_R1_001.fastq.gz 5609424626 FASTQ R1_L002 unaligned CPTAC3 08f42aaf-e92e-4cdb-8cad-cf7ba704a416 8dcde62436f27099681c92cc70ba3902 { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-03462.RNA-Seq.R1_L002.T C3L-03462 LUAD RNA-Seq tumor CPT0190070009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGTAAGT-ACTCTATG_S8_L002_R1_001.fastq.gz 4816010569 FASTQ R1_L002 unaligned CPTAC3 ea36bf78-e9fe-46b3-90a2-9d279423087b a4e9cd1cf06ad05585b287570c56a9e6 { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-03462.RNA-Seq.R2_L002.A C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 190702_UNC32-K00270_0187_AH7FK2BBXY_TGGATCGA-GTGCGATA_S7_L002_R2_001.fastq.gz 6122059962 FASTQ R2_L002 unaligned CPTAC3 a7e6797e-a229-4708-9d39-2b9a48c52c94 293a58593853853356cfe3445d561164 { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-03462.RNA-Seq.R2_L002.T C3L-03462 LUAD RNA-Seq tumor CPT0190070009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGTAAGT-ACTCTATG_S8_L002_R2_001.fastq.gz 5406571725 FASTQ R2_L002 unaligned CPTAC3 b949d047-6693-4f02-b7e2-f60b42df43c7 b27320d24d77721bdab152d98162e029 { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-03462.RNA-Seq.transcriptome.A.hg38 C3L-03462 LUAD RNA-Seq tissue_normal CPT0190090010 ec8a0ca0-a47c-4071-8089-f21f12f4dca4.rna_seq.transcriptome.gdc_realn.bam 11832418896 BAM transcriptome harmonized CPTAC3 f8cde06c-5114-4237-9bae-0218846b9faf f0fbba3f8ed896b37fbed853f16553e2 { 'aliquot_tag': 'ALQ_4f80395', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03462.RNA-Seq.transcriptome.T.hg38 C3L-03462 LUAD RNA-Seq tumor CPT0190070009 fd0be5aa-c457-44c3-a552-3cf1db3a67ad.rna_seq.transcriptome.gdc_realn.bam 11414858209 BAM transcriptome harmonized CPTAC3 c70cf8dd-f088-4e6f-8d71-b65ef323de7f d376b52d014681b9ef892cf29851f20b { 'aliquot_tag': 'ALQ_db0f3411', 'gdc_sample_type': 'Primary Tumor' } C3L-03462.WGS.N C3L-03462 LUAD WGS blood_normal CPT0191180002 CPT0191180002.WholeGenome.RP-1303.bam 57725226561 BAM aligned CPTAC3 f7466b8e-d54a-4846-a0a2-89cc219941ac 68d1c89d586dc086c0c5f44b576e3680 { 'aliquot_tag': 'ALQ_a3a6a259', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03462.WGS.N.hg38 C3L-03462 LUAD WGS blood_normal CPT0191180002 56b5fceb-9455-4d86-8bb0-42e3434f36bf_wgs_gdc_realn.bam 85245147296 BAM harmonized CPTAC3 0b99365a-116c-4b5c-ba4d-79ba135cbc28 0e7bde125b1f100511b51f993ba35ad8 { 'aliquot_tag': 'ALQ_a3a6a259', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03462.WGS.T C3L-03462 LUAD WGS tumor CPT0190070006 CPT0190070006.WholeGenome.RP-1303.bam 69800880244 BAM aligned CPTAC3 5a70f90d-0983-4704-8012-c7a74344167d 25e68bb7ef5a2b2c324a5892dca150c0 { 'aliquot_tag': 'ALQ_4bb02980', 'gdc_sample_type': 'Primary Tumor' } @@ -13448,16 +14302,16 @@ C3L-03463.miRNA-Seq.A C3L-03463 LUAD miRNA-Seq tissue_normal CPT0190020009 19071 C3L-03463.miRNA-Seq.A.hg38 C3L-03463 LUAD miRNA-Seq tissue_normal CPT0190020009 d2000a12-cd1e-41e8-aba7-f02b0144e0e0_mirnaseq_gdc_realn.bam 291291644 BAM harmonized CPTAC3 307cf366-d5d2-4db6-b46b-a83e7019fd74 4b445f69f8bcedf32d095a3e8180963b { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03463.miRNA-Seq.T C3L-03463 LUAD miRNA-Seq tumor CPT0190010009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTCCGC_S14_L005_R1_001.unaln.bam 185978130 BAM unaligned CPTAC3 14b59328-100a-4ee4-8256-d50eb3d7c6a9 524799ab1484188cef9fc557faed750a { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor' } C3L-03463.miRNA-Seq.T.hg38 C3L-03463 LUAD miRNA-Seq tumor CPT0190010009 6ece8972-033d-4694-9d03-91bd99b0532d_mirnaseq_gdc_realn.bam 207612206 BAM harmonized CPTAC3 6cd2eccb-37b1-469d-8b08-3c21754667e2 67dd92a60d951fa9b798001bd3949918 { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-03463.RNA-Seq.chimeric.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 587e0c58-98f9-49b0-86b6-4751d16f9d0b.rna_seq.chimeric.gdc_realn.bam 117585466 BAM chimeric harmonized CPTAC3 f7181775-005a-432f-a56b-5605d7e25cef 3506dde0830979d583560d9446ac89fd { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03463.RNA-Seq.chimeric.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 b1fa926f-7a35-4f95-8c6c-429222189f2a.rna_seq.chimeric.gdc_realn.bam 33397551 BAM chimeric harmonized CPTAC3 8c75020c-574f-41cb-a427-028e1f9af490 9df0d4fdeb74c48484a5297adbcdb35c { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-03463.RNA-Seq.genomic.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 587e0c58-98f9-49b0-86b6-4751d16f9d0b.rna_seq.genomic.gdc_realn.bam 7626932437 BAM genomic harmonized CPTAC3 3faad4ac-36a3-4a9f-9618-18bd285049f9 163f992a1bfae93033fc3af904ee1b9c { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03463.RNA-Seq.genomic.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 b1fa926f-7a35-4f95-8c6c-429222189f2a.rna_seq.genomic.gdc_realn.bam 15105751833 BAM genomic harmonized CPTAC3 d0b8f7a0-5932-4bca-b5d4-0ec596b7c78d 5dfb04e78ae9385819e1666d06c3361d { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-03463.RNA-Seq.R1_L002.T C3L-03463 LUAD RNA-Seq tumor CPT0190010009 190607_UNC32-K00270_0179_BH75W2BBXY_CGGCGTGA-GCGCCTGT_S6_L002_R1_001.fastq.gz 4344189479 FASTQ R1_L002 unaligned CPTAC3 8af7daf9-d63a-4c4d-b9f9-b298da23bcd5 97ee89eff24c8808aaf0c266987ed85a { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-03463.RNA-Seq.R1_L006.A C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 190715_UNC31-K00269_0232_BH7H7CBBXY_CAAGCTAG-ACATAGCG_S22_L006_R1_001.fastq.gz 3014580074 FASTQ R1_L006 unaligned CPTAC3 3a1d08ac-7208-4ae2-a1bb-204516c40043 a05588a485a979afae3a732a18fcdf68 { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03463.RNA-Seq.R2_L002.T C3L-03463 LUAD RNA-Seq tumor CPT0190010009 190607_UNC32-K00270_0179_BH75W2BBXY_CGGCGTGA-GCGCCTGT_S6_L002_R2_001.fastq.gz 5021960605 FASTQ R2_L002 unaligned CPTAC3 dadcbb2c-584f-4847-92a0-2bfa844266f2 a9a5c7232f05b424e71c93fbed089acd { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor' } -C3L-03463.RNA-Seq.R2_L006.A C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 190715_UNC31-K00269_0232_BH7H7CBBXY_CAAGCTAG-ACATAGCG_S22_L006_R2_001.fastq.gz 3197654267 FASTQ R2_L006 unaligned CPTAC3 a08b3171-0932-4601-b7d0-cbab3d9c8b41 82608727fd1cfa99bfceefe03a113b09 { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03463.RNA-Seq.transcriptome.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 587e0c58-98f9-49b0-86b6-4751d16f9d0b.rna_seq.transcriptome.gdc_realn.bam 5684114197 BAM transcriptome harmonized CPTAC3 dfe53f79-0b7f-45d0-8e40-3d1925caaf94 34bc7143dc710a74d35018d757e26991 { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03463.RNA-Seq.transcriptome.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 b1fa926f-7a35-4f95-8c6c-429222189f2a.rna_seq.transcriptome.gdc_realn.bam 9207440143 BAM transcriptome harmonized CPTAC3 bc8f15c0-5521-4021-91f5-b111c553522a 89c9a7ee5e0749c4786af3a79ac51ee1 { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-03463.RNA-Seq.chimeric.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 990df765-f388-4c16-97e1-55294f4f0175.rna_seq.chimeric.gdc_realn.bam 117572107 BAM chimeric harmonized CPTAC3 526aa765-f156-44cc-833b-010314e044da 9830b86c8957411fcdae7e2b110e4ccb { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03463.RNA-Seq.chimeric.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 0d90bc59-556b-4386-b45e-f7b8522da882.rna_seq.chimeric.gdc_realn.bam 33387159 BAM chimeric harmonized CPTAC3 24ebd95b-bc92-43f1-9e7c-e497d4bc3b64 67126d77ab489a2675b2266f403b0e4e { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-03463.RNA-Seq.genomic.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 990df765-f388-4c16-97e1-55294f4f0175.rna_seq.genomic.gdc_realn.bam 7627666417 BAM genomic harmonized CPTAC3 00357488-7ef6-471b-be2a-32cd1d9b5195 085fa3dcf7eb5a38477a63da7ef75b42 { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03463.RNA-Seq.genomic.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 0d90bc59-556b-4386-b45e-f7b8522da882.rna_seq.genomic.gdc_realn.bam 15108527066 BAM genomic harmonized CPTAC3 462dfd62-3e26-4da8-a725-f11ed13c1af6 f3c249402991805dbf7a71ec4f657b35 { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor' } +C3L-03463.RNA-Seq.R1_L002.T C3L-03463 LUAD RNA-Seq tumor CPT0190010009 190607_UNC32-K00270_0179_BH75W2BBXY_CGGCGTGA-GCGCCTGT_S6_L002_R1_001.fastq.gz 4344189479 FASTQ R1_L002 unaligned CPTAC3 8af7daf9-d63a-4c4d-b9f9-b298da23bcd5 97ee89eff24c8808aaf0c266987ed85a { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-03463.RNA-Seq.R1_L006.A C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 190715_UNC31-K00269_0232_BH7H7CBBXY_CAAGCTAG-ACATAGCG_S22_L006_R1_001.fastq.gz 3014580074 FASTQ R1_L006 unaligned CPTAC3 3a1d08ac-7208-4ae2-a1bb-204516c40043 a05588a485a979afae3a732a18fcdf68 { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-03463.RNA-Seq.R2_L002.T C3L-03463 LUAD RNA-Seq tumor CPT0190010009 190607_UNC32-K00270_0179_BH75W2BBXY_CGGCGTGA-GCGCCTGT_S6_L002_R2_001.fastq.gz 5021960605 FASTQ R2_L002 unaligned CPTAC3 dadcbb2c-584f-4847-92a0-2bfa844266f2 a9a5c7232f05b424e71c93fbed089acd { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-03463.RNA-Seq.R2_L006.A C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 190715_UNC31-K00269_0232_BH7H7CBBXY_CAAGCTAG-ACATAGCG_S22_L006_R2_001.fastq.gz 3197654267 FASTQ R2_L006 unaligned CPTAC3 a08b3171-0932-4601-b7d0-cbab3d9c8b41 82608727fd1cfa99bfceefe03a113b09 { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-03463.RNA-Seq.transcriptome.A.hg38 C3L-03463 LUAD RNA-Seq tissue_normal CPT0190020009 990df765-f388-4c16-97e1-55294f4f0175.rna_seq.transcriptome.gdc_realn.bam 6463037656 BAM transcriptome harmonized CPTAC3 733fe733-6a7a-4c98-b0a6-29ea599abbd9 518142e75ad850826aaa8c8a0885513a { 'aliquot_tag': 'ALQ_13efbb61', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03463.RNA-Seq.transcriptome.T.hg38 C3L-03463 LUAD RNA-Seq tumor CPT0190010009 0d90bc59-556b-4386-b45e-f7b8522da882.rna_seq.transcriptome.gdc_realn.bam 10133494128 BAM transcriptome harmonized CPTAC3 3c2b36ac-21f6-41a6-89a7-a4addc5a1cac aa692708fab33a537791113d278002fc { 'aliquot_tag': 'ALQ_544fc1b1', 'gdc_sample_type': 'Primary Tumor' } C3L-03463.WGS.N C3L-03463 LUAD WGS blood_normal CPT0191080002 CPT0191080002.WholeGenome.RP-1303.bam 58889584047 BAM aligned CPTAC3 b1f70092-d513-4a8c-9fac-4c32d7dd0b38 028d3afe0fd173109561021a4c80756e { 'aliquot_tag': 'ALQ_68fa71fc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03463.WGS.N.hg38 C3L-03463 LUAD WGS blood_normal CPT0191080002 71c20dba-7e3c-48a7-bb01-34619832fddd_wgs_gdc_realn.bam 86909473238 BAM harmonized CPTAC3 1f0133de-83c3-4f1a-9759-9f2a4ca3ded1 9499d8ef40e13fda7b44956d94d1fa17 { 'aliquot_tag': 'ALQ_68fa71fc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03463.WGS.T C3L-03463 LUAD WGS tumor CPT0190010006 CPT0190010006.WholeGenome.RP-1303.bam 55074996383 BAM aligned CPTAC3 1189a10c-71c9-4540-87e6-d33671e38849 1e7a6f77b16c06bcc81d5d75b31cfb2e { 'aliquot_tag': 'ALQ_c4f0dc20', 'gdc_sample_type': 'Primary Tumor' } @@ -13472,13 +14326,16 @@ C3L-03467.MethArray.Green.T C3L-03467 UCEC Methylation Array tumor CPT0188610006 C3L-03467.MethArray.Red.T C3L-03467 UCEC Methylation Array tumor CPT0188610006 203561450099_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 f4f05099-b439-4a8d-b44d-44c1d086d04f 8d28f582bb3b8c399214ac2995dffe75 { 'aliquot_tag': 'ALQ_edec71c4', 'gdc_sample_type': 'Primary Tumor' } C3L-03467.miRNA-Seq.T C3L-03467 UCEC miRNA-Seq tumor CPT0188610009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAAAAG_S28_L004_R1_001.unaln.bam 227494141 BAM unaligned CPTAC3 416fd5a5-b3a3-4bac-b836-1da8497cbe94 03444859f8aff21379a523ab28ffebab { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor' } C3L-03467.miRNA-Seq.T.hg38 C3L-03467 UCEC miRNA-Seq tumor CPT0188610009 605d206a-e3f9-4f00-a89d-c9e865abf71e_mirnaseq_gdc_realn.bam 255767787 BAM harmonized CPTAC3 cd0adf42-ee65-463f-bb37-e43ef891e69c 5eb5aeb688686932b62bcc4e49391169 { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor' } -C3L-03467.RNA-Seq.chimeric.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 00d715bb-9c16-485e-9174-68d958a98790.rna_seq.chimeric.gdc_realn.bam 35364166 BAM chimeric harmonized CPTAC3 bb7b267e-d9ec-4d4b-8343-04d536444257 28de2d724741e839bea6a89fac275812 { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor' } -C3L-03467.RNA-Seq.genomic.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 00d715bb-9c16-485e-9174-68d958a98790.rna_seq.genomic.gdc_realn.bam 8261817746 BAM genomic harmonized CPTAC3 6fa548ab-c613-4de2-8db0-1361a00b21b1 6cbb0ae3dacbee0685c985a132a6681d { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor' } -C3L-03467.RNA-Seq.R1_L004.T C3L-03467 UCEC RNA-Seq tumor CPT0188610009 190523_UNC32-K00270_0176_BH7CW7BBXY_GACGTCTT-GGTTCACC_S16_L004_R1_001.fastq.gz 3894724405 FASTQ R1_L004 unaligned CPTAC3 400fefc2-8e91-4953-b8e0-d1bdcf30252b c4a64b89e6ea62379158367240fb778e { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor' } -C3L-03467.RNA-Seq.R1_.T C3L-03467 UCEC RNA-Seq tumor CPT0348380001 20210729_P3_F3_WB7988-Plate3_S63_R1_001.fastq.gz 4912189381 FASTQ R1_ unaligned CPTAC3 e7b51a2e-57df-4ccd-bbcc-1dfeaf777b48 f4388c8c876ff2a4973a562905b101f6 { 'aliquot_tag': 'ALQ_570c2a6c', 'gdc_sample_type': 'Primary Tumor' } -C3L-03467.RNA-Seq.R2_L004.T C3L-03467 UCEC RNA-Seq tumor CPT0188610009 190523_UNC32-K00270_0176_BH7CW7BBXY_GACGTCTT-GGTTCACC_S16_L004_R2_001.fastq.gz 4436200395 FASTQ R2_L004 unaligned CPTAC3 30c268b4-b8d7-463a-8ec2-4f70a9d6eca4 c2cc34260905972bc3f39021a7aad018 { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor' } -C3L-03467.RNA-Seq.R2_.T C3L-03467 UCEC RNA-Seq tumor CPT0348380001 20210729_P3_F3_WB7988-Plate3_S63_R2_001.fastq.gz 5079463116 FASTQ R2_ unaligned CPTAC3 959367d0-4854-4701-b965-aa36f6e689ef 142c58469ecf8c25f3270deb5bb1feef { 'aliquot_tag': 'ALQ_570c2a6c', 'gdc_sample_type': 'Primary Tumor' } -C3L-03467.RNA-Seq.transcriptome.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 00d715bb-9c16-485e-9174-68d958a98790.rna_seq.transcriptome.gdc_realn.bam 8459565484 BAM transcriptome harmonized CPTAC3 5669dfd2-a943-4549-9654-85aab7bd42c0 56eb2efba5d740dec669a0f0b91ce203 { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor' } +C3L-03467.RNA-Seq.chimeric.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 e87d676f-5790-466e-943d-7620be8120c5.rna_seq.chimeric.gdc_realn.bam 35349095 BAM chimeric harmonized CPTAC3 b1c2081e-bf41-431b-a030-aa421f9483ce 806591c6fa2397eb4d3abed597e252ac { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor' } +C3L-03467.RNA-Seq.chimeric.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0348380001 123c37ff-4bf4-4e61-9a8a-e2ca064731cf.rna_seq.chimeric.gdc_realn.bam 223393706 BAM chimeric harmonized CPTAC3 9ee0d27b-cfc6-41d9-bf50-9efcacb9d498 3dfb0860da34cf47422a2760043d0707 { 'aliquot_tag': 'ALQ_570c2a6c', 'gdc_sample_type': 'Primary Tumor' } +C3L-03467.RNA-Seq.genomic.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 e87d676f-5790-466e-943d-7620be8120c5.rna_seq.genomic.gdc_realn.bam 8262495919 BAM genomic harmonized CPTAC3 ea61c716-3486-4179-9d32-4945dc4abf29 f59080570022d1b749e9998987f104d2 { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor' } +C3L-03467.RNA-Seq.genomic.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0348380001 123c37ff-4bf4-4e61-9a8a-e2ca064731cf.rna_seq.genomic.gdc_realn.bam 8351470314 BAM genomic harmonized CPTAC3 b5e2f273-8de0-409d-a6ab-6277b526ad35 428a331d5e9ee08bc5e324368e9d6868 { 'aliquot_tag': 'ALQ_570c2a6c', 'gdc_sample_type': 'Primary Tumor' } +C3L-03467.RNA-Seq.R1_L004.T C3L-03467 UCEC RNA-Seq tumor CPT0188610009 190523_UNC32-K00270_0176_BH7CW7BBXY_GACGTCTT-GGTTCACC_S16_L004_R1_001.fastq.gz 3894724405 FASTQ R1_L004 unaligned CPTAC3 400fefc2-8e91-4953-b8e0-d1bdcf30252b c4a64b89e6ea62379158367240fb778e { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-03467.RNA-Seq.R2_L004.T C3L-03467 UCEC RNA-Seq tumor CPT0188610009 190523_UNC32-K00270_0176_BH7CW7BBXY_GACGTCTT-GGTTCACC_S16_L004_R2_001.fastq.gz 4436200395 FASTQ R2_L004 unaligned CPTAC3 30c268b4-b8d7-463a-8ec2-4f70a9d6eca4 c2cc34260905972bc3f39021a7aad018 { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-03467.RNA-Seq.T C3L-03467 UCEC RNA-Seq tumor CPT0348380001 20210729_P3_F3_WB7988-Plate3_S63_R1_001.fastq.gz 4912189381 FASTQ unaligned CPTAC3 e7b51a2e-57df-4ccd-bbcc-1dfeaf777b48 f4388c8c876ff2a4973a562905b101f6 +C3L-03467.RNA-Seq.T C3L-03467 UCEC RNA-Seq tumor CPT0348380001 20210729_P3_F3_WB7988-Plate3_S63_R2_001.fastq.gz 5079463116 FASTQ unaligned CPTAC3 959367d0-4854-4701-b965-aa36f6e689ef 142c58469ecf8c25f3270deb5bb1feef +C3L-03467.RNA-Seq.transcriptome.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0188610009 e87d676f-5790-466e-943d-7620be8120c5.rna_seq.transcriptome.gdc_realn.bam 9596940236 BAM transcriptome harmonized CPTAC3 c97bf175-d3a3-4c5e-8e2d-3e356f258423 5e43aec113970eebf40c0f9f3e716704 { 'aliquot_tag': 'ALQ_7d536c55', 'gdc_sample_type': 'Primary Tumor' } +C3L-03467.RNA-Seq.transcriptome.T.hg38 C3L-03467 UCEC RNA-Seq tumor CPT0348380001 123c37ff-4bf4-4e61-9a8a-e2ca064731cf.rna_seq.transcriptome.gdc_realn.bam 3947678671 BAM transcriptome harmonized CPTAC3 a7d5fc48-76f2-4c31-9e56-056ee77c55c5 d5c81dd27938202fd1e1103927746687 { 'aliquot_tag': 'ALQ_570c2a6c', 'gdc_sample_type': 'Primary Tumor' } C3L-03467.WGS.N C3L-03467 UCEC WGS blood_normal CPT0183190002 CPT0183190002.WholeGenome.RP-1303.bam 63428991227 BAM aligned CPTAC3 bcd793a1-0aab-4892-b2f1-1dc1ebb4938e 393c75247dabe8be79bd72f2734e9531 { 'aliquot_tag': 'ALQ_c5f39a5e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03467.WGS.N.hg38 C3L-03467 UCEC WGS blood_normal CPT0183190002 71869d46-d631-4c9f-b9b6-a718ea06724b_wgs_gdc_realn.bam 94192937562 BAM harmonized CPTAC3 e3de90da-a5bc-4515-9d79-3f6cc188dffd 5d06e61506a6c76bbe3bc88407e028c3 { 'aliquot_tag': 'ALQ_c5f39a5e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03467.WGS.T C3L-03467 UCEC WGS tumor CPT0188610006 CPT0188610006.WholeGenome.RP-1303.bam 73984772200 BAM aligned CPTAC3 baba5abc-2757-4c63-995b-26d14e441c18 a2945fadf8d7ff8c748b998458043cae { 'aliquot_tag': 'ALQ_edec71c4', 'gdc_sample_type': 'Primary Tumor' } @@ -13491,11 +14348,12 @@ C3L-03491.MethArray.Green.Tbm C3L-03491 AML Methylation Array tumor_bone_marrow C3L-03491.MethArray.Red.Tbm C3L-03491 AML Methylation Array tumor_bone_marrow CPT0201160002 203561450027_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 a883c10f-aed8-473c-bc80-2a7a6c31c47b 0e9050502ed655a1b439ced086f72b86 { 'aliquot_tag': 'ALQ_3a543bd6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03491.miRNA-Seq.Tbm C3L-03491 AML miRNA-Seq tumor_bone_marrow CPT0201240002 190508_UNC31-K00269_0215_BH7FYKBBXY_CACGAT_S31_L002_R1_001.unaln.bam 199409090 BAM unaligned CPTAC3 eb72124c-12f7-4b86-baaa-4bcdd9b17b9c fa43751bc1ed6957fc2e8322add0ac45 { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03491.miRNA-Seq.Tbm.hg38 C3L-03491 AML miRNA-Seq tumor_bone_marrow CPT0201240002 60c9fa49-457c-4d32-92a3-beadc022622d_mirnaseq_gdc_realn.bam 222877411 BAM harmonized CPTAC3 b3481da4-bb81-4a7f-adbc-a34ce42f7120 4200e90695a6e38cf211362e539c30d8 { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03491.RNA-Seq.chimeric.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 ad4487c3-f67d-4e58-8c71-82a4f244fb27.rna_seq.chimeric.gdc_realn.bam 35039981 BAM chimeric harmonized CPTAC3 987e031f-41ae-44c9-989a-e9316e878659 3cd7156c628dd72c0067084bf98c56a0 { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03491.RNA-Seq.genomic.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 ad4487c3-f67d-4e58-8c71-82a4f244fb27.rna_seq.genomic.gdc_realn.bam 9448134756 BAM genomic harmonized CPTAC3 a69c3935-2931-4a43-8066-221613703c50 25a11777a6eaae014bc91846ab38a91b { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03491.RNA-Seq.R1_L007.Tbm C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L007_R1_001.fastq.gz 4655695385 FASTQ R1_L007 unaligned CPTAC3 b4ab375f-c8ff-4016-8999-bc1864a9cb8f 914d7a0684fa0ce73b11197eb558f6a6 { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03491.RNA-Seq.R2_L007.Tbm C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L007_R2_001.fastq.gz 4875951370 FASTQ R2_L007 unaligned CPTAC3 f8b0ee43-6b6c-44ed-af83-ad31191765a6 d1324202427d1d451e5b0bd4524c44c6 { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03491.RNA-Seq.transcriptome.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 ad4487c3-f67d-4e58-8c71-82a4f244fb27.rna_seq.transcriptome.gdc_realn.bam 8808503709 BAM transcriptome harmonized CPTAC3 87545471-7e1d-4061-bb13-833451658b3f ad62f59787512da8cb0d6cbc33c69c2e { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03491.RNA-Seq.chimeric.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 9314c82b-a544-4832-9e82-d69d7cdc9382.rna_seq.chimeric.gdc_realn.bam 35020710 BAM chimeric harmonized CPTAC3 8683b422-8132-47b1-8b52-2fb52b0d7803 4eaebb6a1c03914558bc7854c3c71e45 { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03491.RNA-Seq.genomic.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 9314c82b-a544-4832-9e82-d69d7cdc9382.rna_seq.genomic.gdc_realn.bam 9449164693 BAM genomic harmonized CPTAC3 03274a8d-2a28-42a6-9783-d523d0f9926a 38f94071c9aa961b888b545284492f98 { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03491.RNA-Seq.R1_L007.Tbm C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L007_R1_001.fastq.gz 4655695385 FASTQ R1_L007 unaligned CPTAC3 b4ab375f-c8ff-4016-8999-bc1864a9cb8f 914d7a0684fa0ce73b11197eb558f6a6 { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-03491.RNA-Seq.R2_L007.Tbm C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L007_R2_001.fastq.gz 4875951370 FASTQ R2_L007 unaligned CPTAC3 f8b0ee43-6b6c-44ed-af83-ad31191765a6 d1324202427d1d451e5b0bd4524c44c6 { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-03491.RNA-Seq.transcriptome.Tbm.hg38 C3L-03491 AML RNA-Seq tumor_bone_marrow CPT0201240002 9314c82b-a544-4832-9e82-d69d7cdc9382.rna_seq.transcriptome.gdc_realn.bam 10040901775 BAM transcriptome harmonized CPTAC3 c03e8eba-4538-4385-a82a-96b685f318cb 98590e29a1e5e1b2e6dfdf317615380d { 'aliquot_tag': 'ALQ_c6001a18', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03491.WGS.Nbc C3L-03491 AML WGS buccal_normal CPT0201260002_1 CPT0201260002_1.WholeGenome.RP-1303.bam 66764773211 BAM aligned CPTAC3 fe742c91-96a7-4183-9ee1-d8ddcad6430f f2623d88a46a9cfacbdaba2be0f947be { 'aliquot_tag': 'ALQ_c5c2e554', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03491.WGS.Nbc C3L-03491 AML WGS buccal_normal CPT0201260002 CPT0201260002.WholeGenome.RP-1303.bam 28153730545 BAM aligned CPTAC3 1f5c76aa-379c-48ae-80ca-9096eab3a70b 893db18c95bc1edae49d9d03dd54d94c { 'aliquot_tag': 'ALQ_bcc04978', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03491.WGS.Nbc.hg38 C3L-03491 AML WGS buccal_normal CPT0201260002 1ff3c330-46ce-47a5-b4d0-c54341f4f7a5_wgs_gdc_realn.bam 38834048412 BAM harmonized CPTAC3 5151bfab-e478-4666-a7d5-91cc71758983 7bc6ce6713b05d3a23f678caeede08ce { 'aliquot_tag': 'ALQ_bcc04978', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03491.WGS.Tbm C3L-03491 AML WGS tumor_bone_marrow CPT0201160002 CPT0201160002.WholeGenome.RP-1303.bam 94166755555 BAM aligned CPTAC3 2678eb89-1dbf-4b9b-bd5d-88d8022848bf 82150d8e80f03d75e25baae7d763e7b5 { 'aliquot_tag': 'ALQ_3a543bd6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -13508,11 +14366,11 @@ C3L-03493.MethArray.Green.Tbm C3L-03493 AML Methylation Array tumor_bone_marrow C3L-03493.MethArray.Red.Tbm C3L-03493 AML Methylation Array tumor_bone_marrow CPT0201410002 203561450114_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 400791ab-5298-462c-a709-fb2be174d675 e6f660fc96cb0e7d8fe981e78736f529 { 'aliquot_tag': 'ALQ_d8b97675', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03493.miRNA-Seq.Tbm C3L-03493 AML miRNA-Seq tumor_bone_marrow CPT0201490002 190508_UNC31-K00269_0215_BH7FYKBBXY_CACTCA_S32_L002_R1_001.unaln.bam 224783467 BAM unaligned CPTAC3 0f15ca4f-637f-478f-afe9-adc199c3a949 b927484d62dd8a649d5b640709c7a31f { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03493.miRNA-Seq.Tbm.hg38 C3L-03493 AML miRNA-Seq tumor_bone_marrow CPT0201490002 69f74ab6-b617-4442-a217-2ce8682abed0_mirnaseq_gdc_realn.bam 249112097 BAM harmonized CPTAC3 d14416c0-8926-4e92-b2bd-3325e03ee23b f1287e55048be91d5b14777e3f20f5e3 { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03493.RNA-Seq.chimeric.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 201a2778-f5c5-4752-bff0-1a06c72935e3.rna_seq.chimeric.gdc_realn.bam 27354716 BAM chimeric harmonized CPTAC3 f9d8a0a6-2e63-492c-ad87-e1bc8dc391c3 cfe99231d2c574b5abec933779c5b379 { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03493.RNA-Seq.genomic.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 201a2778-f5c5-4752-bff0-1a06c72935e3.rna_seq.genomic.gdc_realn.bam 13432165770 BAM genomic harmonized CPTAC3 e7bbc555-335e-4f06-ad58-112ff4681449 d04338f6c543e92c3129c4669d6aecdf { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03493.RNA-Seq.R1_L007.Tbm C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L007_R1_001.fastq.gz 4136869861 FASTQ R1_L007 unaligned CPTAC3 4f44b8ed-24b0-4cd8-88d8-932b4d084bb7 0114b390b94b1789f8f11c44f67640e7 { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03493.RNA-Seq.R2_L007.Tbm C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L007_R2_001.fastq.gz 4426720000 FASTQ R2_L007 unaligned CPTAC3 fdaee277-9884-48eb-94e4-08462dcac691 0984e2672b2188d17f182f57db30124a { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03493.RNA-Seq.transcriptome.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 201a2778-f5c5-4752-bff0-1a06c72935e3.rna_seq.transcriptome.gdc_realn.bam 7934148723 BAM transcriptome harmonized CPTAC3 9db7d8ec-ef11-4977-b77b-9186164101be 1d7c4a7915f8361237b871833bfe3d8e { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03493.RNA-Seq.chimeric.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 25a114b0-ce2c-4c62-8d72-80c2dba1d6eb.rna_seq.chimeric.gdc_realn.bam 27355043 BAM chimeric harmonized CPTAC3 1b4f566b-dc99-4f5c-80e3-97f893f309cd 6dcddb392d990bf37a3b3653d85d04b6 { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03493.RNA-Seq.genomic.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 25a114b0-ce2c-4c62-8d72-80c2dba1d6eb.rna_seq.genomic.gdc_realn.bam 13431887116 BAM genomic harmonized CPTAC3 97253c3c-0468-4c34-b4e6-e6b478aaca7f 6062ef20bc8cc33c21a2c3f32f8a313d { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03493.RNA-Seq.R1_L007.Tbm C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L007_R1_001.fastq.gz 4136869861 FASTQ R1_L007 unaligned CPTAC3 4f44b8ed-24b0-4cd8-88d8-932b4d084bb7 0114b390b94b1789f8f11c44f67640e7 { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-03493.RNA-Seq.R2_L007.Tbm C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 190426_UNC32-K00270_0167_AH7CK7BBXY_AATGCCTC-TCGATCCA_S4_L007_R2_001.fastq.gz 4426720000 FASTQ R2_L007 unaligned CPTAC3 fdaee277-9884-48eb-94e4-08462dcac691 0984e2672b2188d17f182f57db30124a { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-03493.RNA-Seq.transcriptome.Tbm.hg38 C3L-03493 AML RNA-Seq tumor_bone_marrow CPT0201490002 25a114b0-ce2c-4c62-8d72-80c2dba1d6eb.rna_seq.transcriptome.gdc_realn.bam 8870801427 BAM transcriptome harmonized CPTAC3 98acafd8-8fcd-43c5-9a99-eabaf66159c1 e14831ca6fdd4fd06be715f46ba10cd5 { 'aliquot_tag': 'ALQ_e8c93db4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03493.WGS.Nbc C3L-03493 AML WGS buccal_normal CPT0201510002 CPT0201510002.WholeGenome.RP-1303.bam 80451513582 BAM aligned CPTAC3 bc0f930f-56b7-4f29-8602-6b73cf19abe3 d2603b6a461f4ba6df6716755bb7f8d9 { 'aliquot_tag': 'ALQ_13e5a5d0', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03493.WGS.Nbc.hg38 C3L-03493 AML WGS buccal_normal CPT0201510002 7f96e108-e097-4c20-a1c9-685d67dd2a72_wgs_gdc_realn.bam 120593417529 BAM harmonized CPTAC3 a76f4c04-d156-48ae-a49e-59200fbe2315 9b1b7cbb980d061e2af610a669197449 { 'aliquot_tag': 'ALQ_13e5a5d0', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03493.WGS.Tbm C3L-03493 AML WGS tumor_bone_marrow CPT0201410002 CPT0201410002.WholeGenome.RP-1303.bam 89642061229 BAM aligned CPTAC3 af3ecb23-5a09-4b3e-9f10-50f8805885a3 ce3148a5916a6f37271e09848959f41b { 'aliquot_tag': 'ALQ_d8b97675', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -13525,11 +14383,11 @@ C3L-03496.MethArray.Green.Tbm C3L-03496 AML Methylation Array tumor_bone_marrow C3L-03496.MethArray.Red.Tbm C3L-03496 AML Methylation Array tumor_bone_marrow CPT0230700002 203561620053_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 6bdef76b-ae7e-4c27-854b-1eb3d324be26 c4bf3cb2e2e4deba00eba1e3dcc55829 { 'aliquot_tag': 'ALQ_4bb5213c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03496.miRNA-Seq.Tbm C3L-03496 AML miRNA-Seq tumor_bone_marrow CPT0230710002 190508_UNC31-K00269_0215_BH7FYKBBXY_CATTTT_S35_L002_R1_001.unaln.bam 210696724 BAM unaligned CPTAC3 f25ce087-7ddb-48fb-a185-7f06b9a74d6d e8c81d4a98bd3d2f9d360dc456e61c50 { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03496.miRNA-Seq.Tbm.hg38 C3L-03496 AML miRNA-Seq tumor_bone_marrow CPT0230710002 c14fdb09-b7f8-4192-b468-9747fabe7aeb_mirnaseq_gdc_realn.bam 230575342 BAM harmonized CPTAC3 11806f70-f8b5-4709-8233-3bf55b710986 bb99c8c5b1691aa38ed3de0b12c58f03 { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03496.RNA-Seq.chimeric.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 704f5164-fdba-4455-8bb8-aaf02a3c42de.rna_seq.chimeric.gdc_realn.bam 31216419 BAM chimeric harmonized CPTAC3 7109ace3-b96c-4481-8b39-f02440b9094e e9865a62feff16ef3355816e377a295c { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03496.RNA-Seq.genomic.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 704f5164-fdba-4455-8bb8-aaf02a3c42de.rna_seq.genomic.gdc_realn.bam 8191713986 BAM genomic harmonized CPTAC3 44998485-b1a7-49cf-bd33-da5728ec52c4 ab8116eb76c98767790097fe846dd6a3 { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03496.RNA-Seq.R1_L008.Tbm C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 190426_UNC32-K00270_0167_AH7CK7BBXY_AGCCTCAT-AGTAGAGA_S23_L008_R1_001.fastq.gz 4117117079 FASTQ R1_L008 unaligned CPTAC3 1d6edd93-fa5c-4279-9c3e-4581c8ac3b98 b4a6ba41ecf10f4d50945c6715a83a9c { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03496.RNA-Seq.R2_L008.Tbm C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 190426_UNC32-K00270_0167_AH7CK7BBXY_AGCCTCAT-AGTAGAGA_S23_L008_R2_001.fastq.gz 4606872181 FASTQ R2_L008 unaligned CPTAC3 8f3698ca-efbf-4bda-aa48-9f4a69f13208 300f44e68644b6162a97c5047f753b47 { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03496.RNA-Seq.transcriptome.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 704f5164-fdba-4455-8bb8-aaf02a3c42de.rna_seq.transcriptome.gdc_realn.bam 9506620184 BAM transcriptome harmonized CPTAC3 02d86685-5bfd-4540-8372-e340b0337fb5 948da1f13ca7ee638821065ab219b226 { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03496.RNA-Seq.chimeric.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 62138e18-65c1-4b2e-a191-66db98f2beb2.rna_seq.chimeric.gdc_realn.bam 31204449 BAM chimeric harmonized CPTAC3 18f59efc-3e0d-487e-993c-f9ccf615ada2 b601e10d110f1a9f72b328c83e1b15bf { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03496.RNA-Seq.genomic.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 62138e18-65c1-4b2e-a191-66db98f2beb2.rna_seq.genomic.gdc_realn.bam 8192672533 BAM genomic harmonized CPTAC3 15c9e787-8f22-4abe-bf78-f344a4ea4990 de3ba9a3fb0200f7e46b7bfc465d859e { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03496.RNA-Seq.R1_L008.Tbm C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 190426_UNC32-K00270_0167_AH7CK7BBXY_AGCCTCAT-AGTAGAGA_S23_L008_R1_001.fastq.gz 4117117079 FASTQ R1_L008 unaligned CPTAC3 1d6edd93-fa5c-4279-9c3e-4581c8ac3b98 b4a6ba41ecf10f4d50945c6715a83a9c { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-03496.RNA-Seq.R2_L008.Tbm C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 190426_UNC32-K00270_0167_AH7CK7BBXY_AGCCTCAT-AGTAGAGA_S23_L008_R2_001.fastq.gz 4606872181 FASTQ R2_L008 unaligned CPTAC3 8f3698ca-efbf-4bda-aa48-9f4a69f13208 300f44e68644b6162a97c5047f753b47 { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-03496.RNA-Seq.transcriptome.Tbm.hg38 C3L-03496 AML RNA-Seq tumor_bone_marrow CPT0230710002 62138e18-65c1-4b2e-a191-66db98f2beb2.rna_seq.transcriptome.gdc_realn.bam 10971623951 BAM transcriptome harmonized CPTAC3 dead9860-6ddb-4690-973b-2d548561659a 1bcaa0366e8ec42d46678d83547654a1 { 'aliquot_tag': 'ALQ_76d5088c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03496.WGS.Nbc C3L-03496 AML WGS buccal_normal CPT0230800001 CPT0230800001.WholeGenome.RP-1303.bam 71770193050 BAM aligned CPTAC3 03c1b7de-490b-4ea9-a784-fda04b701045 108931836f86f32741f03d55875ff330 { 'aliquot_tag': 'ALQ_23eac253', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03496.WGS.Nbc.hg38 C3L-03496 AML WGS buccal_normal CPT0230800001 60e4af64-58be-46eb-a31d-33af26cc948f_wgs_gdc_realn.bam 106774664814 BAM harmonized CPTAC3 e28d6175-4ee7-497c-a49d-712b85f10815 b51f50ecb75e2da64bdb87acdd55e040 { 'aliquot_tag': 'ALQ_23eac253', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03496.WGS.Tbm C3L-03496 AML WGS tumor_bone_marrow CPT0230700002 CPT0230700002.WholeGenome.RP-1303.bam 56789681958 BAM aligned CPTAC3 1dec89be-07a5-406a-8e22-f3fcd995525f 9069fbd7160cf485fc4403a688f5ec0b { 'aliquot_tag': 'ALQ_4bb5213c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -13542,11 +14400,12 @@ C3L-03497.MethArray.Green.Tbm C3L-03497 AML Methylation Array tumor_bone_marrow C3L-03497.MethArray.Red.Tbm C3L-03497 AML Methylation Array tumor_bone_marrow CPT0230630002 203561450054_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 210aca49-9a20-4fe1-8918-d62e8bbee628 a60f5414b9d9b16241ceec72e754b41d { 'aliquot_tag': 'ALQ_c7498849', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03497.miRNA-Seq.Tbm C3L-03497 AML miRNA-Seq tumor_bone_marrow CPT0230640002 190508_UNC31-K00269_0215_BH7FYKBBXY_CATGGC_S34_L002_R1_001.unaln.bam 189795844 BAM unaligned CPTAC3 de354781-b2f8-47f2-9ba6-ec57bd73e5a1 9afcb49fa60b6e5c58a484375a591586 { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03497.miRNA-Seq.Tbm.hg38 C3L-03497 AML miRNA-Seq tumor_bone_marrow CPT0230640002 f20277ed-877f-4d23-b017-682932ca90d9_mirnaseq_gdc_realn.bam 211905142 BAM harmonized CPTAC3 48ec0475-2d92-432a-8a7b-c38eb090f23f 7bbb2c44afd0b0cb255c5c8ba0036f5c { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03497.RNA-Seq.chimeric.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 5af1d3d2-4103-4db1-9a22-352d8261cdd0.rna_seq.chimeric.gdc_realn.bam 36704156 BAM chimeric harmonized CPTAC3 bc1934da-0c10-474f-9a6c-0760a0f03c1b 7450144daa3e8f274dde7fbcdd668e4d { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03497.RNA-Seq.genomic.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 5af1d3d2-4103-4db1-9a22-352d8261cdd0.rna_seq.genomic.gdc_realn.bam 8669024564 BAM genomic harmonized CPTAC3 4cd093b4-3dde-445d-96fc-c411f7b7a5b0 6f57b1088598c88220339d9356d9dd06 { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03497.RNA-Seq.R1_L008.Tbm C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 190426_UNC32-K00270_0167_AH7CK7BBXY_CGTTAGAA-TTCAGGTC_S25_L008_R1_001.fastq.gz 4217899145 FASTQ R1_L008 unaligned CPTAC3 be502fb7-05dd-4427-836c-f87cbd41f18b 32c931e29ce4d5c21f70519e72864d69 { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03497.RNA-Seq.R2_L008.Tbm C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 190426_UNC32-K00270_0167_AH7CK7BBXY_CGTTAGAA-TTCAGGTC_S25_L008_R2_001.fastq.gz 4855714135 FASTQ R2_L008 unaligned CPTAC3 d452cd4c-f793-4b18-a675-b58f92cc384a 9572ca040fa95914d758e3655e8c1c66 { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03497.RNA-Seq.transcriptome.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 5af1d3d2-4103-4db1-9a22-352d8261cdd0.rna_seq.transcriptome.gdc_realn.bam 9823939096 BAM transcriptome harmonized CPTAC3 eabe1024-2347-4862-811b-cd2f1b2de9b7 ae88d5be894a36e4279f3f31291ce59b { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03497.RNA-Seq.chimeric.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 2cd98f61-2f18-4c84-82ff-be532ce307b9.rna_seq.chimeric.gdc_realn.bam 36687614 BAM chimeric harmonized CPTAC3 a1dc26a7-ab7f-45cd-a5a2-4d03368046f6 915fa2961973e1c81407077f77fd57fc { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03497.RNA-Seq.genomic.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 2cd98f61-2f18-4c84-82ff-be532ce307b9.rna_seq.genomic.gdc_realn.bam 8669792161 BAM genomic harmonized CPTAC3 25cbe564-c0d4-4b30-80c4-ac867a4e3b14 4a02a5381a20ab2d0f84e67427c682de { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03497.RNA-Seq.R1_L008.Tbm C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 190426_UNC32-K00270_0167_AH7CK7BBXY_CGTTAGAA-TTCAGGTC_S25_L008_R1_001.fastq.gz 4217899145 FASTQ R1_L008 unaligned CPTAC3 be502fb7-05dd-4427-836c-f87cbd41f18b 32c931e29ce4d5c21f70519e72864d69 { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-03497.RNA-Seq.R2_L008.Tbm C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 190426_UNC32-K00270_0167_AH7CK7BBXY_CGTTAGAA-TTCAGGTC_S25_L008_R2_001.fastq.gz 4855714135 FASTQ R2_L008 unaligned CPTAC3 d452cd4c-f793-4b18-a675-b58f92cc384a 9572ca040fa95914d758e3655e8c1c66 { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-03497.RNA-Seq.transcriptome.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow CPT0230640002 2cd98f61-2f18-4c84-82ff-be532ce307b9.rna_seq.transcriptome.gdc_realn.bam 11199735671 BAM transcriptome harmonized CPTAC3 2ad0618c-0359-45b7-9f49-9c0e1bf38805 433919fdf7c7bb3c04678f7d82b26c1d { 'aliquot_tag': 'ALQ_75695459', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03497.WGS.Nbc C3L-03497 AML WGS buccal_normal CPT0230660001_1 CPT0230660001_1.WholeGenome.RP-1303.bam 72868517834 BAM aligned CPTAC3 b7827db7-eaab-4e5c-b7dd-fb5178cd7102 940deb66f8a342d1aa8db3183801796d { 'aliquot_tag': 'ALQ_bf82fab7', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03497.WGS.Nbc C3L-03497 AML WGS buccal_normal CPT0230660001 CPT0230660001.WholeGenome.RP-1303.bam 26983389377 BAM aligned CPTAC3 8f24d99e-ba74-4890-b7b2-011ede0f7952 f0fae6f4f178bde896db458f13f03986 { 'aliquot_tag': 'ALQ_96a05683', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03497.WGS.Nbc.hg38 C3L-03497 AML WGS buccal_normal CPT0230660001 bf771a0d-734e-4a46-a7fb-e8a733e9e17b_wgs_gdc_realn.bam 37146848269 BAM harmonized CPTAC3 492aa2d8-f3cf-4a7c-beb4-0ba4abdb38bb 5ce3f9a6c8cc01a459fbe384adbaf118 { 'aliquot_tag': 'ALQ_96a05683', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03497.WGS.Tbm C3L-03497 AML WGS tumor_bone_marrow CPT0230630002 CPT0230630002.WholeGenome.RP-1303.bam 64905594415 BAM aligned CPTAC3 86c43df0-ed93-4f5e-b4fc-aa9b57102524 16c135744104f79a82ea8a38f165a2d4 { 'aliquot_tag': 'ALQ_c7498849', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -13558,46 +14417,63 @@ C3L-03497.WXS.Tbm.hg38 C3L-03497 AML WXS tumor_bone_marrow CPT0230630002 450e4b1 C3L-03506.MethArray.Green.Tbm C3L-03506 AML Methylation Array tumor_bone_marrow CPT0280790002 205555390176_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 aabd3ac0-ae12-4a67-b380-506c8831af8e a62744997105789f2ae0f7305006ceb0 { 'aliquot_tag': 'ALQ_1bcf5f1b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03506.MethArray.Red.Tbm C3L-03506 AML Methylation Array tumor_bone_marrow CPT0280790002 205555390176_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 fbff295e-e609-4e28-9513-88a00d5ee37c 03082fb7cc339c043b09646e6d901f6f { 'aliquot_tag': 'ALQ_1bcf5f1b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03506.miRNA-Seq.Tbm C3L-03506 AML miRNA-Seq tumor_bone_marrow CPT0280800002 210702_UNC32-K00270_0289_AHKJ22BBXY_GATCAG_S11_L001_R1_001.unaln.bam 253032104 BAM unaligned CPTAC3 c80562ce-107b-4929-b9c5-f11d7e4a8ec3 1cabbf5616f4d1ac4e5ba806e8098771 { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03506.RNA-Seq.chimeric.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 89195aa6-74e7-4321-a1f1-e0a3c729ea3f.rna_seq.chimeric.gdc_realn.bam 131075778 BAM chimeric harmonized CPTAC3 f7c657ef-8b94-40e8-8c5b-611c5fccebd4 bdc949fa96286842d23d3af4c13e7a2d { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03506.RNA-Seq.genomic.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 89195aa6-74e7-4321-a1f1-e0a3c729ea3f.rna_seq.genomic.gdc_realn.bam 7373615340 BAM genomic harmonized CPTAC3 30ad0aa1-1119-47ea-be94-70f39ea9f594 66be0c1cba96e15bd12369b1e17dc4f0 { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03506.RNA-Seq.R1_L006.Tbm C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGGCGT-CCTCGGTA_S24_L006_R1_001.fastq.gz 3763741700 FASTQ R1_L006 unaligned CPTAC3 437768d4-042d-4ce3-976b-4661251774f4 4c29fb079f93601a555179845d9eb4b2 { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03506.RNA-Seq.R2_L006.Tbm C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGGCGT-CCTCGGTA_S24_L006_R2_001.fastq.gz 3971268601 FASTQ R2_L006 unaligned CPTAC3 cfb053a9-a6a0-4a3f-8753-0a09b0a66327 20b192e3ab294b4ce5084ad50846e03b { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03506.RNA-Seq.transcriptome.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 89195aa6-74e7-4321-a1f1-e0a3c729ea3f.rna_seq.transcriptome.gdc_realn.bam 8979243814 BAM transcriptome harmonized CPTAC3 49fa2d88-4ba1-4374-becd-47929a7b808c d425b2e685b2b334fabd64fbc118835e { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03506.miRNA-Seq.Tbm.hg38 C3L-03506 AML miRNA-Seq tumor_bone_marrow CPT0280800002 262734ff-71e2-4eab-8336-4779f1ed752b_mirnaseq_gdc_realn.bam 273375229 BAM harmonized CPTAC3 f5b76cfb-93bd-475d-8d06-c87a5700a677 2c771ffded21ef98d9c34fff7e9780b0 { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03506.RNA-Seq.chimeric.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 15d2b48f-3f71-42ec-b09d-42b69e23cb62.rna_seq.chimeric.gdc_realn.bam 131074510 BAM chimeric harmonized CPTAC3 af3b5702-35db-4063-bd18-cad60bd03e75 73f8dc926c6a3f12c595eae88e619cae { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03506.RNA-Seq.genomic.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 15d2b48f-3f71-42ec-b09d-42b69e23cb62.rna_seq.genomic.gdc_realn.bam 7383637041 BAM genomic harmonized CPTAC3 6300ebb4-db79-408f-964b-f08fc5686f42 04444474c7499cec48be670a229c8361 { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03506.RNA-Seq.R1_L006.Tbm C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGGCGT-CCTCGGTA_S24_L006_R1_001.fastq.gz 3763741700 FASTQ R1_L006 unaligned CPTAC3 437768d4-042d-4ce3-976b-4661251774f4 4c29fb079f93601a555179845d9eb4b2 { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-03506.RNA-Seq.R2_L006.Tbm C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGGCGT-CCTCGGTA_S24_L006_R2_001.fastq.gz 3971268601 FASTQ R2_L006 unaligned CPTAC3 cfb053a9-a6a0-4a3f-8753-0a09b0a66327 20b192e3ab294b4ce5084ad50846e03b { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-03506.RNA-Seq.transcriptome.Tbm.hg38 C3L-03506 AML RNA-Seq tumor_bone_marrow CPT0280800002 15d2b48f-3f71-42ec-b09d-42b69e23cb62.rna_seq.transcriptome.gdc_realn.bam 10393790611 BAM transcriptome harmonized CPTAC3 eeb0d106-3cfc-439f-a8df-356dea6a32f0 334ec5cd32ff3f06573609b2aa7fa3ad { 'aliquot_tag': 'ALQ_e7898fbf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03506.WGS.Nbc C3L-03506 AML WGS buccal_normal CPT0280780001 CPT0280780001.WholeGenome.RP-2158.bam 62419406007 BAM aligned CPTAC3 cbee0556-0f3e-4294-a1c7-ce272d0fc3ac 09944c7bf4e3e89bafc5fea8b5a94cf5 { 'aliquot_tag': 'ALQ_bfa62711', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-03506.WGS.Nbc.hg38 C3L-03506 AML WGS buccal_normal CPT0280780001 b955d449-4e11-4a49-9cf6-285624c143f8_wgs_gdc_realn.bam 196253332359 BAM harmonized CPTAC3 0e01c3e7-f302-4e40-84fa-39093f664511 2cfb1ab27042f5394b7d28c3af4fe668 { 'aliquot_tag': 'ALQ_bfa62711', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03506.WGS.Tbm C3L-03506 AML WGS tumor_bone_marrow CPT0280790002 CPT0280790002.WholeGenome.RP-2158.bam 49404623811 BAM aligned CPTAC3 5e942798-0eb0-463f-b3aa-f83d011c34a3 53d0c9e07c961c86445df230c8a3102e { 'aliquot_tag': 'ALQ_1bcf5f1b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03506.WGS.Tbm.hg38 C3L-03506 AML WGS tumor_bone_marrow CPT0280790002 29bc2957-52fe-492b-a1d3-860e026feacb_wgs_gdc_realn.bam 149163033387 BAM harmonized CPTAC3 e588d3ea-e49d-436d-ba8d-3078d662beeb 0678240761b5592d560ed444a3f466de { 'aliquot_tag': 'ALQ_1bcf5f1b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03506.WXS.Nbc C3L-03506 AML WXS buccal_normal CPT0280780001 CPT0280780001.WholeExome.RP-1303.bam 26364264392 BAM aligned CPTAC3 9bdcfdc5-8d05-4361-81d2-279d000706db 95ceaf077b548990dd4024d02c183966 { 'aliquot_tag': 'ALQ_bfa62711', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-03506.WXS.Nbc.hg38 C3L-03506 AML WXS buccal_normal CPT0280780001 b955d449-4e11-4a49-9cf6-285624c143f8_wxs_gdc_realn.bam 36606170104 BAM harmonized CPTAC3 0ccedbbe-7557-439d-b112-1298da45dabf 1d0677f34a1273fbac13df9318c6dca8 { 'aliquot_tag': 'ALQ_bfa62711', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03506.WXS.Tbm C3L-03506 AML WXS tumor_bone_marrow CPT0280790002 CPT0280790002.WholeExome.RP-1303.bam 32393423439 BAM aligned CPTAC3 a3034fb6-fab5-4b0a-b30b-672a77185fd9 f103aec523a654ebcad81a526789c862 { 'aliquot_tag': 'ALQ_1bcf5f1b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03506.WXS.Tbm.hg38 C3L-03506 AML WXS tumor_bone_marrow CPT0280790002 29bc2957-52fe-492b-a1d3-860e026feacb_wxs_gdc_realn.bam 44202542671 BAM harmonized CPTAC3 c8ed37bf-da72-4f32-8064-7d5d9d6b578e b120629c8e6d5a0332c75a6fefedf346 { 'aliquot_tag': 'ALQ_1bcf5f1b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03508.MethArray.Green.Tbm C3L-03508 AML Methylation Array tumor_bone_marrow CPT0280680002 205549600082_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e816b317-19b2-4f1f-b48e-7c896ab609d6 ff86aa33e7ce35a0fb020b76b8e5673a { 'aliquot_tag': 'ALQ_edf3a50e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03508.MethArray.Red.Tbm C3L-03508 AML Methylation Array tumor_bone_marrow CPT0280680002 205549600082_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 54c61ebc-77e7-411c-b78c-b7313ee23581 51290a6c862edbeff2a3e86d833e44f9 { 'aliquot_tag': 'ALQ_edf3a50e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03508.miRNA-Seq.Tbm C3L-03508 AML miRNA-Seq tumor_bone_marrow CPT0280690002 210702_UNC32-K00270_0289_AHKJ22BBXY_ACTTGA_S2_L001_R1_001.unaln.bam 189912154 BAM unaligned CPTAC3 78062f73-e0dc-4c95-b6c3-3844c978a9ec f726437a37b8489c409187b1868281c5 { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03508.RNA-Seq.chimeric.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 d371b77a-0b52-448a-9efe-88e7b379b97f.rna_seq.chimeric.gdc_realn.bam 105480360 BAM chimeric harmonized CPTAC3 1b308bea-7785-44a9-adef-204c69a211e8 12fec679b34ef5e8b48457a769953039 { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03508.RNA-Seq.genomic.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 d371b77a-0b52-448a-9efe-88e7b379b97f.rna_seq.genomic.gdc_realn.bam 8278132411 BAM genomic harmonized CPTAC3 d26f8520-bc54-4314-a864-6e4c58bc9289 9f789466f9a543a06a1e7a8af9a0d14b { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03508.RNA-Seq.R1_L007.Tbm C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 210319_UNC31-K00269_0296_AHKT37BBXY_GAATGAGA-GAGGCATT_S27_L007_R1_001.fastq.gz 4258717693 FASTQ R1_L007 unaligned CPTAC3 eff2fed0-50f2-463a-af08-4f7e2c407cd1 c245555a40c878fb70c5eb301afda274 { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03508.RNA-Seq.R2_L007.Tbm C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 210319_UNC31-K00269_0296_AHKT37BBXY_GAATGAGA-GAGGCATT_S27_L007_R2_001.fastq.gz 4482410886 FASTQ R2_L007 unaligned CPTAC3 9f0b5557-93f6-493d-a913-876087e28fcc 33c4111942f142a8f80e4c6ede7b55fc { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03508.RNA-Seq.transcriptome.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 d371b77a-0b52-448a-9efe-88e7b379b97f.rna_seq.transcriptome.gdc_realn.bam 8054075103 BAM transcriptome harmonized CPTAC3 ee9dff47-15c7-42e7-bf72-7718849d2c2b 66696d1102e7fcebf53f21ac238cdea5 { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03508.miRNA-Seq.Tbm.hg38 C3L-03508 AML miRNA-Seq tumor_bone_marrow CPT0280690002 74d8a080-8de9-41c9-8356-71c7240e6e59_mirnaseq_gdc_realn.bam 207792050 BAM harmonized CPTAC3 dd646ab5-cedb-4969-865f-4d8cbbf56659 ff9d3c15136b963745172aad7dc60bd1 { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03508.RNA-Seq.chimeric.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 be905a91-de11-4ece-96fc-1ca099000ce3.rna_seq.chimeric.gdc_realn.bam 105494203 BAM chimeric harmonized CPTAC3 1164921c-fecf-453a-b6c5-4d0b5e1d90c7 af12bb19d75e347b2fb9bc760cb9f291 { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03508.RNA-Seq.genomic.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 be905a91-de11-4ece-96fc-1ca099000ce3.rna_seq.genomic.gdc_realn.bam 8279378392 BAM genomic harmonized CPTAC3 4b5d0dd8-e739-4608-8f36-59c955c71a4d e9c2987404b28747d93a95bdc9c388fc { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03508.RNA-Seq.R1_L007.Tbm C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 210319_UNC31-K00269_0296_AHKT37BBXY_GAATGAGA-GAGGCATT_S27_L007_R1_001.fastq.gz 4258717693 FASTQ R1_L007 unaligned CPTAC3 eff2fed0-50f2-463a-af08-4f7e2c407cd1 c245555a40c878fb70c5eb301afda274 { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-03508.RNA-Seq.R2_L007.Tbm C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 210319_UNC31-K00269_0296_AHKT37BBXY_GAATGAGA-GAGGCATT_S27_L007_R2_001.fastq.gz 4482410886 FASTQ R2_L007 unaligned CPTAC3 9f0b5557-93f6-493d-a913-876087e28fcc 33c4111942f142a8f80e4c6ede7b55fc { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-03508.RNA-Seq.transcriptome.Tbm.hg38 C3L-03508 AML RNA-Seq tumor_bone_marrow CPT0280690002 be905a91-de11-4ece-96fc-1ca099000ce3.rna_seq.transcriptome.gdc_realn.bam 9136732788 BAM transcriptome harmonized CPTAC3 465697cb-0a77-49d1-8cc7-a0395accfc11 84c7ae1f7a6207721cfdce1b43cc7cb7 { 'aliquot_tag': 'ALQ_d0938cbe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03508.WGS.Nbc C3L-03508 AML WGS buccal_normal CPT0280670001 CPT0280670001.WholeGenome.RP-2158.bam 50606862923 BAM aligned CPTAC3 aaf74e6b-8b70-4e13-8c58-ace5af973742 094a810e82077dacfc980869dd783892 { 'aliquot_tag': 'ALQ_f6aa6365', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-03508.WGS.Nbc.hg38 C3L-03508 AML WGS buccal_normal CPT0280670001 bd67068d-c347-4456-9873-6215dcad3079_wgs_gdc_realn.bam 155897816745 BAM harmonized CPTAC3 931985c6-ced7-4c82-b2ef-ed40d574818f d15eb455d32134e3ee06903267226e5e { 'aliquot_tag': 'ALQ_f6aa6365', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03508.WGS.Tbm C3L-03508 AML WGS tumor_bone_marrow CPT0280680002 CPT0280680002.WholeGenome.RP-2158.bam 45997679356 BAM aligned CPTAC3 50e91da8-aaf6-4a1b-88d0-071e193c8f06 c9f19fc30ce7e0a7f8e20b5ddd996f91 { 'aliquot_tag': 'ALQ_edf3a50e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03508.WGS.Tbm.hg38 C3L-03508 AML WGS tumor_bone_marrow CPT0280680002 9b7446ea-aee1-41d6-b664-9e789f04c463_wgs_gdc_realn.bam 137496545054 BAM harmonized CPTAC3 eb2d66d8-1b52-4fa6-9732-902cab19da2b 0f1ed61f5a4bc37f0dfa452baa62e5e5 { 'aliquot_tag': 'ALQ_edf3a50e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03508.WXS.Nbc C3L-03508 AML WXS buccal_normal CPT0280670001 CPT0280670001.WholeExome.RP-1303.bam 27514868803 BAM aligned CPTAC3 7cacf811-a0a2-45a3-a381-e7b164027783 dd9d516ce528e8a321534d53cf94e570 { 'aliquot_tag': 'ALQ_f6aa6365', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-03508.WXS.Nbc.hg38 C3L-03508 AML WXS buccal_normal CPT0280670001 bd67068d-c347-4456-9873-6215dcad3079_wxs_gdc_realn.bam 38543708143 BAM harmonized CPTAC3 4749abe5-0c59-4005-9b4b-56aab04fd2d2 715bbfbb5137a391b8f94f39b641c2d8 { 'aliquot_tag': 'ALQ_f6aa6365', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03508.WXS.Tbm C3L-03508 AML WXS tumor_bone_marrow CPT0280680002 CPT0280680002.WholeExome.RP-1303.bam 19972493104 BAM aligned CPTAC3 b749c244-502c-441c-9624-8ab19e96f16a 429d35ada230f561489b72af27fff56d { 'aliquot_tag': 'ALQ_edf3a50e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03508.WXS.Tbm.hg38 C3L-03508 AML WXS tumor_bone_marrow CPT0280680002 9b7446ea-aee1-41d6-b664-9e789f04c463_wxs_gdc_realn.bam 27759959188 BAM harmonized CPTAC3 34c0ba20-4cf2-4551-b896-7820e41613f5 6f0bafc535f18b3c3a9dbc1753286dc5 { 'aliquot_tag': 'ALQ_edf3a50e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03510.MethArray.Green.Tbm C3L-03510 AML Methylation Array tumor_bone_marrow CPT0410580002 205555380130_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 1e503c98-7021-46c1-91b1-d3ce8c60912d c558226aa6d99883b35ba22b42dd9ce2 { 'aliquot_tag': 'ALQ_732b501', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03510.MethArray.Red.Tbm C3L-03510 AML Methylation Array tumor_bone_marrow CPT0410580002 205555380130_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 c6d84575-880a-474a-a886-a6d7cb463375 d8c351a1ab7a6cf8c4bb6a94545b4460 { 'aliquot_tag': 'ALQ_732b501', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03510.miRNA-Seq.Tbm C3L-03510 AML miRNA-Seq tumor_bone_marrow CPT0410590002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACCGG_S27_L005_R1_001.unaln.bam 250763383 BAM unaligned CPTAC3 bb30cd37-6579-4ae0-97a6-1c23e7f69898 b601f91af6452cee96f1c94f29eb980c { 'aliquot_tag': 'ALQ_3a529cb1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03510.RNA-Seq.R1_L001.Tbm C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 210708_UNC32-K00270_0290_BHLLHHBBXY_TACTCATA-CCTGTGGC_S3_L001_R1_001.fastq.gz 4251229637 FASTQ R1_L001 unaligned CPTAC3 0d1b1ada-a377-4967-bf87-6f932737d579 f99de475a7956502806f30460fead33f { 'aliquot_tag': 'ALQ_3a529cb1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-03510.RNA-Seq.R2_L001.Tbm C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 210708_UNC32-K00270_0290_BHLLHHBBXY_TACTCATA-CCTGTGGC_S3_L001_R2_001.fastq.gz 4582311192 FASTQ R2_L001 unaligned CPTAC3 7b51fead-61ec-46e0-a257-af0103cbda61 6675a1ad2f56ed23541626116b7013f9 { 'aliquot_tag': 'ALQ_3a529cb1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03510.miRNA-Seq.Tbm.hg38 C3L-03510 AML miRNA-Seq tumor_bone_marrow CPT0410590002 bc256847-ffa5-41bc-8b2c-2ef54e8d2b29_mirnaseq_gdc_realn.bam 261306778 BAM harmonized CPTAC3 ce7c1316-c8f1-451c-847c-394df68dc1bb 43b3836445c5740eed45ba7cf36fd212 { 'aliquot_tag': 'ALQ_3a529cb1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03510.RNA-Seq.chimeric.Tbm.hg38 C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 09b6a723-321a-4172-94c3-3a2787198146.rna_seq.chimeric.gdc_realn.bam 257437696 BAM chimeric harmonized CPTAC3 c332a6b3-d314-483b-b049-ac4c22fc8a2f 49a85d4ca2352f1a65bb3d96cf587ed7 { 'aliquot_tag': 'ALQ_3a529cb1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03510.RNA-Seq.genomic.Tbm.hg38 C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 09b6a723-321a-4172-94c3-3a2787198146.rna_seq.genomic.gdc_realn.bam 9524510209 BAM genomic harmonized CPTAC3 46d62a30-5800-48f2-accf-1374573a2bb0 e58177a316bdc623e0f580d17d7ab7b8 { 'aliquot_tag': 'ALQ_3a529cb1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03510.RNA-Seq.R1_L001.Tbm C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 210708_UNC32-K00270_0290_BHLLHHBBXY_TACTCATA-CCTGTGGC_S3_L001_R1_001.fastq.gz 4251229637 FASTQ R1_L001 unaligned CPTAC3 0d1b1ada-a377-4967-bf87-6f932737d579 f99de475a7956502806f30460fead33f { 'aliquot_tag': 'ALQ_3a529cb1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-03510.RNA-Seq.R2_L001.Tbm C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 210708_UNC32-K00270_0290_BHLLHHBBXY_TACTCATA-CCTGTGGC_S3_L001_R2_001.fastq.gz 4582311192 FASTQ R2_L001 unaligned CPTAC3 7b51fead-61ec-46e0-a257-af0103cbda61 6675a1ad2f56ed23541626116b7013f9 { 'aliquot_tag': 'ALQ_3a529cb1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-03510.RNA-Seq.transcriptome.Tbm.hg38 C3L-03510 AML RNA-Seq tumor_bone_marrow CPT0410590002 09b6a723-321a-4172-94c3-3a2787198146.rna_seq.transcriptome.gdc_realn.bam 8910562315 BAM transcriptome harmonized CPTAC3 988efecf-8b9a-4f8b-9527-cbdac13c2df0 c2a19800bbaae48fdc505cc4c81ff0d7 { 'aliquot_tag': 'ALQ_3a529cb1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03510.WGS.Nbc C3L-03510 AML WGS buccal_normal CPT0410550001 CPT0410550001.WholeGenome.RP-2158.bam 52385796822 BAM aligned CPTAC3 95dc0f78-6155-409b-889f-763edd779ef7 4219709d8a88f8275c5bc8d7196dc962 { 'aliquot_tag': 'ALQ_66ab200a', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-03510.WGS.Nbc.hg38 C3L-03510 AML WGS buccal_normal CPT0410550001 ccf25dcd-3d07-4364-ba84-4d3ef2594ff5_wgs_gdc_realn.bam 150767993249 BAM harmonized CPTAC3 f800b205-92ba-4e0d-90bf-71788445fa57 2efc7b6cf1079ded120cd07aa502c336 { 'aliquot_tag': 'ALQ_66ab200a', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-03510.WGS.Tbm C3L-03510 AML WGS tumor_bone_marrow CPT0410580002 CPT0410580002.WholeGenome.RP-2158.bam 63115965571 BAM aligned CPTAC3 50eb861f-b7e1-43d0-92ed-c20151f0538f d4689be58306f8a0ee0ed21c598d8178 { 'aliquot_tag': 'ALQ_732b501', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03510.WGS.Tbm.hg38 C3L-03510 AML WGS tumor_bone_marrow CPT0410580002 9e15dc83-7043-40b1-bd2e-718f0c9ba19c_wgs_gdc_realn.bam 174421184757 BAM harmonized CPTAC3 3d7fe562-8c05-48ae-988c-7be3aa2fdbe4 916283feb59ee0dcedbaf4f82943af2e { 'aliquot_tag': 'ALQ_732b501', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03510.WXS.Tbm C3L-03510 AML WXS tumor_bone_marrow CPT0410580002 CPT0410580002.WholeExome.RP-1303.bam 23475577138 BAM aligned CPTAC3 33447cf0-2b3f-4a5b-aecc-f9bdff02835a 6691314114c0dc074c2b8efb904e7dc4 { 'aliquot_tag': 'ALQ_732b501', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-03510.WXS.Tbm.hg38 C3L-03510 AML WXS tumor_bone_marrow CPT0410580002 9e15dc83-7043-40b1-bd2e-718f0c9ba19c_wxs_gdc_realn.bam 32666170478 BAM harmonized CPTAC3 99bfee65-bdf3-4382-ab7b-f1168e6cd2a0 928a1920b019d6d740d2d7b1c6d67aa3 { 'aliquot_tag': 'ALQ_732b501', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-03513.RNA-Seq.chimeric.A.hg38 C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 c639e759-ca72-4522-94a4-9dc59acf120f.rna_seq.chimeric.gdc_realn.bam 204620638 BAM chimeric harmonized CPTAC3 337aa8cf-431a-4d63-b34e-60f2837778ee 1bc4a829573cd6e6a3566060b73c9194 { 'aliquot_tag': 'ALQ_29dd7f9a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03513.RNA-Seq.genomic.A.hg38 C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 c639e759-ca72-4522-94a4-9dc59acf120f.rna_seq.genomic.gdc_realn.bam 8451061261 BAM genomic harmonized CPTAC3 c6737fb2-221e-46f4-8027-012f52f9092d 3ae30279f03a8b9ce431bc315d10fb74 { 'aliquot_tag': 'ALQ_29dd7f9a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03513.RNA-Seq.R1_L002.A C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R1_001.fastq.gz 4012444445 FASTQ R1_L002 unaligned CPTAC3 30c65fa6-6f8c-41cc-ae25-6089adc93750 472f5d53e2220e0541d3fd3aef11257f { 'aliquot_tag': 'ALQ_29dd7f9a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03513.RNA-Seq.R2_L002.A C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R2_001.fastq.gz 4410946219 FASTQ R2_L002 unaligned CPTAC3 4f9e894b-8949-486f-ae58-ee15c1d111bf 054f5b8f4ebef2424a220403067010d8 { 'aliquot_tag': 'ALQ_29dd7f9a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03513.RNA-Seq.genomic.A.hg38 C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 c639e759-ca72-4522-94a4-9dc59acf120f.rna_seq.genomic.gdc_realn.bam 8451061261 BAM genomic harmonized CPTAC3 f9812395-0b8c-488d-9fa2-60581c850d4a 3ae30279f03a8b9ce431bc315d10fb74 { 'aliquot_tag': 'ALQ_29dd7f9a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03513.RNA-Seq.R1_L002.A C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R1_001.fastq.gz 4012444445 FASTQ R1_L002 unaligned CPTAC3 30c65fa6-6f8c-41cc-ae25-6089adc93750 472f5d53e2220e0541d3fd3aef11257f { 'aliquot_tag': 'ALQ_29dd7f9a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-03513.RNA-Seq.R2_L002.A C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R2_001.fastq.gz 4410946219 FASTQ R2_L002 unaligned CPTAC3 4f9e894b-8949-486f-ae58-ee15c1d111bf 054f5b8f4ebef2424a220403067010d8 { 'aliquot_tag': 'ALQ_29dd7f9a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } C3L-03513.RNA-Seq.transcriptome.A.hg38 C3L-03513 PDA RNA-Seq tissue_normal CPT0355180006 c639e759-ca72-4522-94a4-9dc59acf120f.rna_seq.transcriptome.gdc_realn.bam 11357227996 BAM transcriptome harmonized CPTAC3 c5b8a7dd-7744-4753-bfd3-4aedaa3010eb 6c4057c92e39f607d0571b5911249c21 { 'aliquot_tag': 'ALQ_29dd7f9a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03547.MethArray.Green.T C3L-03547 GBM Methylation Array tumor CPT0324550012 204372030024_R03C01_Grn.idat 13677905 IDAT Green NA CPTAC3 7c9b6d92-8421-4e60-b6b2-898813838938 64cab40ad148f26409e7183d3070a00c { 'aliquot_tag': 'ALQ_f8180ec8', 'gdc_sample_type': 'Primary Tumor' } C3L-03547.MethArray.Red.T C3L-03547 GBM Methylation Array tumor CPT0324550012 204372030024_R03C01_Red.idat 13677905 IDAT Red NA CPTAC3 24a977f4-8fb6-4a87-acc1-4b94eaddabdc 3dec3027b377b23c8d75e9a93477b911 { 'aliquot_tag': 'ALQ_f8180ec8', 'gdc_sample_type': 'Primary Tumor' } C3L-03547.miRNA-Seq.T C3L-03547 GBM miRNA-Seq tumor CPT0324550015 201209_UNC32-K00270_0265_AHJ55WBBXY_CACCGG_S7_L006_R1_001.unaln.bam 215790967 BAM unaligned CPTAC3 1cc58189-1c07-4b61-91d3-b204930e5912 38dc2c41154c0e36d79f55b68bf7f970 { 'aliquot_tag': 'ALQ_667c9b6b', 'gdc_sample_type': 'Primary Tumor' } C3L-03547.miRNA-Seq.T.hg38 C3L-03547 GBM miRNA-Seq tumor CPT0324550015 08294d72-8b7e-423f-8452-1d6d5400f26a_mirnaseq_gdc_realn.bam 239638838 BAM harmonized CPTAC3 4664f246-db36-4c7a-bde4-4e83807abebb c148ccbb851c8d311406f717c52c12ac { 'aliquot_tag': 'ALQ_667c9b6b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03547.RNA-Seq.R1_L008.T C3L-03547 GBM RNA-Seq tumor CPT0324550015 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAGAGT-TGCCACCA_S30_L008_R1_001.fastq.gz 3991761744 FASTQ R1_L008 unaligned CPTAC3 7e9e1d40-4dbc-4163-800d-8d742fd5951c c81db21cbb761d122e6a64f0434b143b { 'aliquot_tag': 'ALQ_667c9b6b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03547.RNA-Seq.R2_L008.T C3L-03547 GBM RNA-Seq tumor CPT0324550015 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAGAGT-TGCCACCA_S30_L008_R2_001.fastq.gz 4477396798 FASTQ R2_L008 unaligned CPTAC3 4015c25b-3b30-4de3-b681-791a20da543e 1485609eb69985a5c7f7e4449e9b1696 { 'aliquot_tag': 'ALQ_667c9b6b', 'gdc_sample_type': 'Primary Tumor' } +C3L-03547.RNA-Seq.R1_L008.T C3L-03547 GBM RNA-Seq tumor CPT0324550015 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAGAGT-TGCCACCA_S30_L008_R1_001.fastq.gz 3991761744 FASTQ R1_L008 unaligned CPTAC3 7e9e1d40-4dbc-4163-800d-8d742fd5951c c81db21cbb761d122e6a64f0434b143b { 'aliquot_tag': 'ALQ_667c9b6b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-03547.RNA-Seq.R2_L008.T C3L-03547 GBM RNA-Seq tumor CPT0324550015 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAGAGT-TGCCACCA_S30_L008_R2_001.fastq.gz 4477396798 FASTQ R2_L008 unaligned CPTAC3 4015c25b-3b30-4de3-b681-791a20da543e 1485609eb69985a5c7f7e4449e9b1696 { 'aliquot_tag': 'ALQ_667c9b6b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-03547.WGS.N C3L-03547 GBM WGS blood_normal CPT0324640002 CPT0324640002.WholeGenome.RP-2158.bam 25602459451 BAM aligned CPTAC3 881f8f3c-93b3-49a2-a591-06d797ad9585 17e7b7c02ef11e1718a95789000a55bc { 'aliquot_tag': 'ALQ_5af76497', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03547.WGS.T C3L-03547 GBM WGS tumor CPT0324550012 CPT0324550012.WholeGenome.RP-2158.bam 25478141739 BAM aligned CPTAC3 36e1c8ef-a67a-4e3f-8a3d-477b6a158a39 479966759a7617c2987da314f069a761 { 'aliquot_tag': 'ALQ_f8180ec8', 'gdc_sample_type': 'Primary Tumor' } C3L-03547.WXS.N C3L-03547 GBM WXS blood_normal CPT0324640002 CPT0324640002.WholeExome.RP-1303.bam 19178957416 BAM aligned CPTAC3 de366d08-c5aa-41e2-ae0a-76b9c3eb4e4d 4bcc49e021b782659eae141243eb9f34 { 'aliquot_tag': 'ALQ_5af76497', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13606,8 +14482,8 @@ C3L-03554.MethArray.Green.T C3L-03554 GBM Methylation Array tumor CPT0301020013 C3L-03554.MethArray.Red.T C3L-03554 GBM Methylation Array tumor CPT0301020013 204367490084_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 989acb02-704c-457a-85fd-c1615e3769ab 30bf311db6338d5d351572d4ac9b9f90 { 'aliquot_tag': 'ALQ_7def5b27', 'gdc_sample_type': 'Primary Tumor' } C3L-03554.miRNA-Seq.T C3L-03554 GBM miRNA-Seq tumor CPT0301020009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCGGCA_S48_L008_R1_001.unaln.bam 174106631 BAM unaligned CPTAC3 932730cd-4f17-4673-af52-c5481bd7fd19 fe8bd62f1864631a5a4bdca444ded014 { 'aliquot_tag': 'ALQ_84218378', 'gdc_sample_type': 'Primary Tumor' } C3L-03554.miRNA-Seq.T.hg38 C3L-03554 GBM miRNA-Seq tumor CPT0301020009 eeff1666-b3f6-4288-bb9a-e853082318bf_mirnaseq_gdc_realn.bam 189236347 BAM harmonized CPTAC3 f40203ef-0fa7-43f7-9b8b-ff28be114656 edb8dfdda1e840eef21e34b74953eac7 { 'aliquot_tag': 'ALQ_84218378', 'gdc_sample_type': 'Primary Tumor' } -C3L-03554.RNA-Seq.R1_L005.T C3L-03554 GBM RNA-Seq tumor CPT0301020009 200218_UNC31-K00269_0266_AHGKHKBBXY_TTGCCTAG-ACCACTTA_S57_L005_R1_001.fastq.gz 3899755735 FASTQ R1_L005 unaligned CPTAC3 3ecffe17-acc9-4237-87d5-b49163949ae1 f0c9434786f7b2d59f298323aa7f379c { 'aliquot_tag': 'ALQ_84218378', 'gdc_sample_type': 'Primary Tumor' } -C3L-03554.RNA-Seq.R2_L005.T C3L-03554 GBM RNA-Seq tumor CPT0301020009 200218_UNC31-K00269_0266_AHGKHKBBXY_TTGCCTAG-ACCACTTA_S57_L005_R2_001.fastq.gz 4293118449 FASTQ R2_L005 unaligned CPTAC3 da382358-3321-40ea-9631-b0f9586382bd ec376198699479e338296a8b2b286692 { 'aliquot_tag': 'ALQ_84218378', 'gdc_sample_type': 'Primary Tumor' } +C3L-03554.RNA-Seq.R1_L005.T C3L-03554 GBM RNA-Seq tumor CPT0301020009 200218_UNC31-K00269_0266_AHGKHKBBXY_TTGCCTAG-ACCACTTA_S57_L005_R1_001.fastq.gz 3899755735 FASTQ R1_L005 unaligned CPTAC3 3ecffe17-acc9-4237-87d5-b49163949ae1 f0c9434786f7b2d59f298323aa7f379c { 'aliquot_tag': 'ALQ_84218378', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-03554.RNA-Seq.R2_L005.T C3L-03554 GBM RNA-Seq tumor CPT0301020009 200218_UNC31-K00269_0266_AHGKHKBBXY_TTGCCTAG-ACCACTTA_S57_L005_R2_001.fastq.gz 4293118449 FASTQ R2_L005 unaligned CPTAC3 da382358-3321-40ea-9631-b0f9586382bd ec376198699479e338296a8b2b286692 { 'aliquot_tag': 'ALQ_84218378', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-03554.WGS.N C3L-03554 GBM WGS blood_normal CPT0301140002 CPT0301140002.WholeGenome.RP-2158.bam 28438834375 BAM aligned CPTAC3 f296d127-c60b-486d-92d9-8e88f8046a5c f23cb0c1539c6a3e7aedd9bcf6f6ab5f { 'aliquot_tag': 'ALQ_57ef7cf5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03554.WGS.T C3L-03554 GBM WGS tumor CPT0301020013 CPT0301020013.WholeGenome.RP-2158.bam 26075968988 BAM aligned CPTAC3 edfdd242-b211-4910-8f6d-f8cc3a8be922 54d8dd9c0436272cb40e3f1afcf6a7ed { 'aliquot_tag': 'ALQ_7def5b27', 'gdc_sample_type': 'Primary Tumor' } C3L-03554.WXS.N C3L-03554 GBM WXS blood_normal CPT0301140002 CPT0301140002.WholeExome.RP-1303.bam 16450236377 BAM aligned CPTAC3 caa25124-d461-4407-84c4-44281ffe18b6 73b1e23918680b38b1c5230b34d2bd5b { 'aliquot_tag': 'ALQ_57ef7cf5', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13616,8 +14492,8 @@ C3L-03557.MethArray.Green.T C3L-03557 GBM Methylation Array tumor CPT0324870006 C3L-03557.MethArray.Red.T C3L-03557 GBM Methylation Array tumor CPT0324870006 204367490066_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 8ace8ca2-8666-4cbc-98ef-145fe7ce060e 7024e79fbf4aef3c7df6fb69cfb32dd1 { 'aliquot_tag': 'ALQ_2030bb2e', 'gdc_sample_type': 'Primary Tumor' } C3L-03557.miRNA-Seq.T C3L-03557 GBM miRNA-Seq tumor CPT0324870009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ACTGAT_S25_L008_R1_001.unaln.bam 257577074 BAM unaligned CPTAC3 054a26bf-435e-4835-9235-12f9c1271a4a 1074c20855bd6cdd87deb6f081263d20 { 'aliquot_tag': 'ALQ_b08fa6bf', 'gdc_sample_type': 'Primary Tumor' } C3L-03557.miRNA-Seq.T.hg38 C3L-03557 GBM miRNA-Seq tumor CPT0324870009 6c26c40d-7d6b-461f-851b-bf23d0a1a5e4_mirnaseq_gdc_realn.bam 289913765 BAM harmonized CPTAC3 f8d96186-de3b-4573-b595-552c183c7b65 d3ee3eef6c4c01829439cd4cdeec7522 { 'aliquot_tag': 'ALQ_b08fa6bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-03557.RNA-Seq.R1_L007.T C3L-03557 GBM RNA-Seq tumor CPT0324870009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAATTAAC-CGAGATAT_S26_L007_R1_001.fastq.gz 3467165766 FASTQ R1_L007 unaligned CPTAC3 f757407c-6345-4a7f-b3eb-d1e7062dc6ed 6bf1f485e464e1caaceecb5e27f13213 { 'aliquot_tag': 'ALQ_b08fa6bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-03557.RNA-Seq.R2_L007.T C3L-03557 GBM RNA-Seq tumor CPT0324870009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAATTAAC-CGAGATAT_S26_L007_R2_001.fastq.gz 3814209403 FASTQ R2_L007 unaligned CPTAC3 4c4e0d47-d00e-4ab7-a4b5-8144f6cb4a38 022f45850475cad0714272bf71fd139e { 'aliquot_tag': 'ALQ_b08fa6bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-03557.RNA-Seq.R1_L007.T C3L-03557 GBM RNA-Seq tumor CPT0324870009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAATTAAC-CGAGATAT_S26_L007_R1_001.fastq.gz 3467165766 FASTQ R1_L007 unaligned CPTAC3 f757407c-6345-4a7f-b3eb-d1e7062dc6ed 6bf1f485e464e1caaceecb5e27f13213 { 'aliquot_tag': 'ALQ_b08fa6bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-03557.RNA-Seq.R2_L007.T C3L-03557 GBM RNA-Seq tumor CPT0324870009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAATTAAC-CGAGATAT_S26_L007_R2_001.fastq.gz 3814209403 FASTQ R2_L007 unaligned CPTAC3 4c4e0d47-d00e-4ab7-a4b5-8144f6cb4a38 022f45850475cad0714272bf71fd139e { 'aliquot_tag': 'ALQ_b08fa6bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-03557.WGS.N C3L-03557 GBM WGS blood_normal CPT0324980002 CPT0324980002.WholeGenome.RP-2158.bam 26883092391 BAM aligned CPTAC3 80b37c1a-a0cb-4de3-b680-b7349bf80aab 3b54e6f0e1955b0e96b597927d0992b8 { 'aliquot_tag': 'ALQ_6e513b43', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03557.WGS.T C3L-03557 GBM WGS tumor CPT0324870006 CPT0324870006.WholeGenome.RP-2158.bam 25136506176 BAM aligned CPTAC3 37350133-a637-4dc2-b959-aa4ff26b6db3 0e3fb081da0e2f277f6d64901646f83d { 'aliquot_tag': 'ALQ_2030bb2e', 'gdc_sample_type': 'Primary Tumor' } C3L-03557.WXS.N C3L-03557 GBM WXS blood_normal CPT0324980002 CPT0324980002.WholeExome.RP-1303.bam 21448562649 BAM aligned CPTAC3 cd818876-b369-4bbd-808d-40e74f6102bf 81aaaf0e171b63136795d533a477907a { 'aliquot_tag': 'ALQ_6e513b43', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13627,8 +14503,8 @@ C3L-03559.MethArray.Green.T C3L-03559 GBM Methylation Array tumor CPT0325020006 C3L-03559.MethArray.Red.T C3L-03559 GBM Methylation Array tumor CPT0325020006 204367470132_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 a20a27d6-19b0-47d5-b6d2-e481ef758795 9dc46cafd084075cc69a054e99340a4b { 'aliquot_tag': 'ALQ_a2f4bd87', 'gdc_sample_type': 'Primary Tumor' } C3L-03559.miRNA-Seq.T C3L-03559 GBM miRNA-Seq tumor CPT0325020009 200513_UNC31-K00269_0278_BHH7Y7BBXY_ATGAGC_S26_L008_R1_001.unaln.bam 173690875 BAM unaligned CPTAC3 d3969466-da2b-48cb-921a-454fb47fc6d5 68ccac65346454894d7fbd52df751a2f { 'aliquot_tag': 'ALQ_324ba016', 'gdc_sample_type': 'Primary Tumor' } C3L-03559.miRNA-Seq.T.hg38 C3L-03559 GBM miRNA-Seq tumor CPT0325020009 2cf44df8-8374-4c17-9114-2d4bfeec505a_mirnaseq_gdc_realn.bam 194480451 BAM harmonized CPTAC3 02249172-3d82-4e5a-b8e1-3abff3fe2f5a 793acf9f1dba99806f52b1468a601307 { 'aliquot_tag': 'ALQ_324ba016', 'gdc_sample_type': 'Primary Tumor' } -C3L-03559.RNA-Seq.R1_L007.T C3L-03559 GBM RNA-Seq tumor CPT0325020009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGCCGGT-TAGAGCGC_S28_L007_R1_001.fastq.gz 4283684848 FASTQ R1_L007 unaligned CPTAC3 b7fe5718-d6a9-4141-a694-92ea00086026 7e63accebca335aeeda151d46ada2358 { 'aliquot_tag': 'ALQ_324ba016', 'gdc_sample_type': 'Primary Tumor' } -C3L-03559.RNA-Seq.R2_L007.T C3L-03559 GBM RNA-Seq tumor CPT0325020009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGCCGGT-TAGAGCGC_S28_L007_R2_001.fastq.gz 4826363865 FASTQ R2_L007 unaligned CPTAC3 7a894735-c289-4136-aafa-d72edb275143 ba0dd7458045ce6457d2d8e680d040ee { 'aliquot_tag': 'ALQ_324ba016', 'gdc_sample_type': 'Primary Tumor' } +C3L-03559.RNA-Seq.R1_L007.T C3L-03559 GBM RNA-Seq tumor CPT0325020009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGCCGGT-TAGAGCGC_S28_L007_R1_001.fastq.gz 4283684848 FASTQ R1_L007 unaligned CPTAC3 b7fe5718-d6a9-4141-a694-92ea00086026 7e63accebca335aeeda151d46ada2358 { 'aliquot_tag': 'ALQ_324ba016', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-03559.RNA-Seq.R2_L007.T C3L-03559 GBM RNA-Seq tumor CPT0325020009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGCCGGT-TAGAGCGC_S28_L007_R2_001.fastq.gz 4826363865 FASTQ R2_L007 unaligned CPTAC3 7a894735-c289-4136-aafa-d72edb275143 ba0dd7458045ce6457d2d8e680d040ee { 'aliquot_tag': 'ALQ_324ba016', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-03559.WGS.N C3L-03559 GBM WGS blood_normal CPT0325150002 CPT0325150002.WholeGenome.RP-2158.bam 22612865776 BAM aligned CPTAC3 de4df845-6738-4a7f-8e53-fad12668cc6a 15bad7778672f3e1d3184897a47da52c { 'aliquot_tag': 'ALQ_dce5762b', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03559.WGS.T C3L-03559 GBM WGS tumor CPT0325020006 CPT0325020006.WholeGenome.RP-2158.bam 23774365276 BAM aligned CPTAC3 8b8714f9-c726-4065-81ae-9810358794dd 311fa704d92a0a41947e8fdddad2fa14 { 'aliquot_tag': 'ALQ_a2f4bd87', 'gdc_sample_type': 'Primary Tumor' } C3L-03559.WXS.N C3L-03559 GBM WXS blood_normal CPT0325150002 CPT0325150002.WholeExome.RP-1303.bam 18968957435 BAM aligned CPTAC3 c36db34f-b4f2-426e-8cec-5750503ce384 1a6117e4d7366b61f9ea80f456fe89f3 { 'aliquot_tag': 'ALQ_dce5762b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13638,8 +14514,8 @@ C3L-03588.MethArray.Green.T C3L-03588 GBM Methylation Array tumor CPT0300710006 C3L-03588.MethArray.Red.T C3L-03588 GBM Methylation Array tumor CPT0300710006 204372030079_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 28c3c2c9-dc50-489d-81cc-80bc5b939110 c64982e6917422599217a7789be212cf { 'aliquot_tag': 'ALQ_e84cdf35', 'gdc_sample_type': 'Primary Tumor' } C3L-03588.miRNA-Seq.T C3L-03588 GBM miRNA-Seq tumor CPT0300710009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TATAAT_S44_L008_R1_001.unaln.bam 331581993 BAM unaligned CPTAC3 7f0d5dbb-4f41-4100-83d9-7cf9a2db48a2 1741a844b13437534539dff5d87bb352 { 'aliquot_tag': 'ALQ_78f3c2a4', 'gdc_sample_type': 'Primary Tumor' } C3L-03588.miRNA-Seq.T.hg38 C3L-03588 GBM miRNA-Seq tumor CPT0300710009 5d2bae2c-2da7-4386-b6ce-aebb617ec002_mirnaseq_gdc_realn.bam 364147390 BAM harmonized CPTAC3 030643d3-8cad-49d5-9391-f833d17079d1 43879dd371b3548e711ea66bf7be7f6b { 'aliquot_tag': 'ALQ_78f3c2a4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03588.RNA-Seq.R1_L007.T C3L-03588 GBM RNA-Seq tumor CPT0300710009 200218_UNC31-K00269_0266_AHGKHKBBXY_GATCTATC-ATGAGGCT_S63_L007_R1_001.fastq.gz 3716042268 FASTQ R1_L007 unaligned CPTAC3 125972b5-4526-4f1e-b0be-eff967b1ed1e ccf6b030eec492338338525fcfcec22b { 'aliquot_tag': 'ALQ_78f3c2a4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03588.RNA-Seq.R2_L007.T C3L-03588 GBM RNA-Seq tumor CPT0300710009 200218_UNC31-K00269_0266_AHGKHKBBXY_GATCTATC-ATGAGGCT_S63_L007_R2_001.fastq.gz 3951154756 FASTQ R2_L007 unaligned CPTAC3 3e05990f-cdf7-43cc-a667-dd6b824ea2be e02ffdc246bba08cc370237ce60d315c { 'aliquot_tag': 'ALQ_78f3c2a4', 'gdc_sample_type': 'Primary Tumor' } +C3L-03588.RNA-Seq.R1_L007.T C3L-03588 GBM RNA-Seq tumor CPT0300710009 200218_UNC31-K00269_0266_AHGKHKBBXY_GATCTATC-ATGAGGCT_S63_L007_R1_001.fastq.gz 3716042268 FASTQ R1_L007 unaligned CPTAC3 125972b5-4526-4f1e-b0be-eff967b1ed1e ccf6b030eec492338338525fcfcec22b { 'aliquot_tag': 'ALQ_78f3c2a4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-03588.RNA-Seq.R2_L007.T C3L-03588 GBM RNA-Seq tumor CPT0300710009 200218_UNC31-K00269_0266_AHGKHKBBXY_GATCTATC-ATGAGGCT_S63_L007_R2_001.fastq.gz 3951154756 FASTQ R2_L007 unaligned CPTAC3 3e05990f-cdf7-43cc-a667-dd6b824ea2be e02ffdc246bba08cc370237ce60d315c { 'aliquot_tag': 'ALQ_78f3c2a4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-03588.WGS.N C3L-03588 GBM WGS blood_normal CPT0301000002 CPT0301000002.WholeGenome.RP-2158.bam 23149289719 BAM aligned CPTAC3 279eace3-b8de-4e44-8c71-2999ace91236 78bba36189509a74af0f7ca0f86a0795 { 'aliquot_tag': 'ALQ_69330990', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03588.WGS.T C3L-03588 GBM WGS tumor CPT0300710006 CPT0300710006.WholeGenome.RP-2158.bam 23183373339 BAM aligned CPTAC3 a14c6b55-f1c2-4a74-b6f0-293109bf76c7 553d022d2d466b15e1d096ba12d705c6 { 'aliquot_tag': 'ALQ_e84cdf35', 'gdc_sample_type': 'Primary Tumor' } C3L-03588.WXS.N C3L-03588 GBM WXS blood_normal CPT0301000002 CPT0301000002.WholeExome.RP-1303.bam 19500634033 BAM aligned CPTAC3 6148011a-c871-4864-bcfb-1c9d7b969ca7 29ce7c0ee5713ff66da082cdfef251b3 { 'aliquot_tag': 'ALQ_69330990', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13648,13 +14524,16 @@ C3L-03589.MethArray.Green.T C3L-03589 UCEC Methylation Array tumor CPT0188710006 C3L-03589.MethArray.Red.T C3L-03589 UCEC Methylation Array tumor CPT0188710006 203561450018_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 05539ace-57f4-48e9-9992-5e70cb27c15d f10b7834a4e90564c19c2956172fb08d { 'aliquot_tag': 'ALQ_26b0a261', 'gdc_sample_type': 'Primary Tumor' } C3L-03589.miRNA-Seq.T C3L-03589 UCEC miRNA-Seq tumor CPT0188710009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAACTA_S29_L004_R1_001.unaln.bam 238475972 BAM unaligned CPTAC3 547dd03e-764e-403b-850d-5ffde2ae0db2 da3b729d2256992e41d431b769712487 { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor' } C3L-03589.miRNA-Seq.T.hg38 C3L-03589 UCEC miRNA-Seq tumor CPT0188710009 d953d58a-30ab-42d3-8402-e5d052d3db24_mirnaseq_gdc_realn.bam 271472573 BAM harmonized CPTAC3 756e7c3d-894e-43a5-800b-f335213db62d 0b80ef447889bd80d5ec9f8dcb3fff1f { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor' } -C3L-03589.RNA-Seq.chimeric.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 d635cba3-3c81-4e78-8ced-aa605c38e469.rna_seq.chimeric.gdc_realn.bam 32248448 BAM chimeric harmonized CPTAC3 97768b01-9067-4831-8d8a-891744a65d14 94828274e6afa6e9d285f2e9ccc7cfa9 { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor' } -C3L-03589.RNA-Seq.genomic.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 d635cba3-3c81-4e78-8ced-aa605c38e469.rna_seq.genomic.gdc_realn.bam 7291035930 BAM genomic harmonized CPTAC3 3a32fc0a-0e9b-4fc5-a453-644c62e93ea5 183d66dcf52282e932f1595f771dc100 { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor' } -C3L-03589.RNA-Seq.R1_L003.T C3L-03589 UCEC RNA-Seq tumor CPT0188710009 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGAGAC-CATTGTTG_S9_L003_R1_001.fastq.gz 3472628912 FASTQ R1_L003 unaligned CPTAC3 e77f5f6a-e76c-48b6-90d8-51ce0c4b32ad d4ed53e3390b9e8cca2f2efcd3c7d712 { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor' } -C3L-03589.RNA-Seq.R1_.T C3L-03589 UCEC RNA-Seq tumor CPT0348440001 20210723_P2_B8_WB7988-plate2_S20_R1_001.fastq.gz 6148540452 FASTQ R1_ unaligned CPTAC3 f0b6263d-b4a5-4ed0-b9b1-c04d25351671 37802e91cb4faa59706573cc739023ff { 'aliquot_tag': 'ALQ_8ff9f7d5', 'gdc_sample_type': 'Primary Tumor' } -C3L-03589.RNA-Seq.R2_L003.T C3L-03589 UCEC RNA-Seq tumor CPT0188710009 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGAGAC-CATTGTTG_S9_L003_R2_001.fastq.gz 3956765576 FASTQ R2_L003 unaligned CPTAC3 a1215d7e-9536-4a14-8474-6a67c0014834 df652364fe37d24dde1bfa9e53848cba { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor' } -C3L-03589.RNA-Seq.R2_.T C3L-03589 UCEC RNA-Seq tumor CPT0348440001 20210723_P2_B8_WB7988-plate2_S20_R2_001.fastq.gz 6363547418 FASTQ R2_ unaligned CPTAC3 6b7bf9fa-71f8-4616-a99a-7d59170e22e1 72d74baf26d4ea789cc633bc13733393 { 'aliquot_tag': 'ALQ_8ff9f7d5', 'gdc_sample_type': 'Primary Tumor' } -C3L-03589.RNA-Seq.transcriptome.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 d635cba3-3c81-4e78-8ced-aa605c38e469.rna_seq.transcriptome.gdc_realn.bam 10037901868 BAM transcriptome harmonized CPTAC3 513f4598-cfb3-461f-8524-a04ddcacc12c e9fcc83839250984f60c2a8e73f4404b { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor' } +C3L-03589.RNA-Seq.chimeric.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 18338c93-2e34-4f23-a5fa-a6a4a7ee41de.rna_seq.chimeric.gdc_realn.bam 32231247 BAM chimeric harmonized CPTAC3 d0e304d0-e78c-40b1-b629-e1c3a4a236b5 1a5559789c98f9a0860ffb678905c9a3 { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor' } +C3L-03589.RNA-Seq.chimeric.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0348440001 a9f33d39-eb5c-41b8-83d6-c803056e7012.rna_seq.chimeric.gdc_realn.bam 182239680 BAM chimeric harmonized CPTAC3 94675456-c625-4722-9cda-5d99cfab529d 1c4de518fb13be8418d865c12ada818b { 'aliquot_tag': 'ALQ_8ff9f7d5', 'gdc_sample_type': 'Primary Tumor' } +C3L-03589.RNA-Seq.genomic.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 18338c93-2e34-4f23-a5fa-a6a4a7ee41de.rna_seq.genomic.gdc_realn.bam 7291860631 BAM genomic harmonized CPTAC3 a9cc2207-d181-437b-924d-308904a94e86 53744d9f3ec2375d5cda9507f6e3b487 { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor' } +C3L-03589.RNA-Seq.genomic.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0348440001 a9f33d39-eb5c-41b8-83d6-c803056e7012.rna_seq.genomic.gdc_realn.bam 10103885246 BAM genomic harmonized CPTAC3 a1bef494-3032-40e3-a6f9-4afc8995fdb1 73975a0a122fa1732cef1ea08f2176a0 { 'aliquot_tag': 'ALQ_8ff9f7d5', 'gdc_sample_type': 'Primary Tumor' } +C3L-03589.RNA-Seq.R1_L003.T C3L-03589 UCEC RNA-Seq tumor CPT0188710009 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGAGAC-CATTGTTG_S9_L003_R1_001.fastq.gz 3472628912 FASTQ R1_L003 unaligned CPTAC3 e77f5f6a-e76c-48b6-90d8-51ce0c4b32ad d4ed53e3390b9e8cca2f2efcd3c7d712 { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-03589.RNA-Seq.R2_L003.T C3L-03589 UCEC RNA-Seq tumor CPT0188710009 190523_UNC32-K00270_0176_BH7CW7BBXY_TGCGAGAC-CATTGTTG_S9_L003_R2_001.fastq.gz 3956765576 FASTQ R2_L003 unaligned CPTAC3 a1215d7e-9536-4a14-8474-6a67c0014834 df652364fe37d24dde1bfa9e53848cba { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-03589.RNA-Seq.T C3L-03589 UCEC RNA-Seq tumor CPT0348440001 20210723_P2_B8_WB7988-plate2_S20_R1_001.fastq.gz 6148540452 FASTQ unaligned CPTAC3 f0b6263d-b4a5-4ed0-b9b1-c04d25351671 37802e91cb4faa59706573cc739023ff +C3L-03589.RNA-Seq.T C3L-03589 UCEC RNA-Seq tumor CPT0348440001 20210723_P2_B8_WB7988-plate2_S20_R2_001.fastq.gz 6363547418 FASTQ unaligned CPTAC3 6b7bf9fa-71f8-4616-a99a-7d59170e22e1 72d74baf26d4ea789cc633bc13733393 +C3L-03589.RNA-Seq.transcriptome.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0188710009 18338c93-2e34-4f23-a5fa-a6a4a7ee41de.rna_seq.transcriptome.gdc_realn.bam 11555709157 BAM transcriptome harmonized CPTAC3 24c24c8c-c0a5-48d1-a9f2-2eff45350135 fc4740b159112a2395f0d8e029b61ebe { 'aliquot_tag': 'ALQ_b60fbff0', 'gdc_sample_type': 'Primary Tumor' } +C3L-03589.RNA-Seq.transcriptome.T.hg38 C3L-03589 UCEC RNA-Seq tumor CPT0348440001 a9f33d39-eb5c-41b8-83d6-c803056e7012.rna_seq.transcriptome.gdc_realn.bam 6546683301 BAM transcriptome harmonized CPTAC3 e25ba766-e609-4f91-ae61-48bdde8abbc5 3fd7ec77b4534a38dce2b9867276428f { 'aliquot_tag': 'ALQ_8ff9f7d5', 'gdc_sample_type': 'Primary Tumor' } C3L-03589.WGS.N C3L-03589 UCEC WGS blood_normal CPT0188770002 CPT0188770002.WholeGenome.RP-1303.bam 78304610301 BAM aligned CPTAC3 a102817c-ea10-4e11-9b8a-7c22229e172d 35ddb8c4094ae5783b751c8e55f57c41 { 'aliquot_tag': 'ALQ_ae9d93d8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03589.WGS.N.hg38 C3L-03589 UCEC WGS blood_normal CPT0188770002 68f8e0fd-5220-4628-9987-e4fbea57e9e9_wgs_gdc_realn.bam 115115636168 BAM harmonized CPTAC3 bd6b2826-154e-4b74-a395-7fadc4650c7c 039460289d7ce02661fc3e39d56e6537 { 'aliquot_tag': 'ALQ_ae9d93d8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03589.WGS.T C3L-03589 UCEC WGS tumor CPT0188710006 CPT0188710006.WholeGenome.RP-1303.bam 68898683915 BAM aligned CPTAC3 e78e8c4e-6e66-49b2-ade3-ca3f13088a7c 18330a530cba891d9ea23073a7b48dab { 'aliquot_tag': 'ALQ_26b0a261', 'gdc_sample_type': 'Primary Tumor' } @@ -13663,11 +14542,11 @@ C3L-03589.WXS.N C3L-03589 UCEC WXS blood_normal CPT0188770002 CPT0188770002.Whol C3L-03589.WXS.N.hg38 C3L-03589 UCEC WXS blood_normal CPT0188770002 68f8e0fd-5220-4628-9987-e4fbea57e9e9_wxs_gdc_realn.bam 32013242171 BAM harmonized CPTAC3 39e343ca-ccae-406e-b79e-46c1b13d585c c21650abd03dd37690be33dda1050ac8 { 'aliquot_tag': 'ALQ_ae9d93d8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03589.WXS.T C3L-03589 UCEC WXS tumor CPT0188710006 CPT0188710006.WholeExome.RP-1303.bam 27977586785 BAM aligned CPTAC3 abdfdd89-5f4e-4ef0-8874-c6f2235de180 98cc2eb4542757d259770bfdf0d1e125 { 'aliquot_tag': 'ALQ_26b0a261', 'gdc_sample_type': 'Primary Tumor' } C3L-03589.WXS.T.hg38 C3L-03589 UCEC WXS tumor CPT0188710006 7683eac6-c2fe-47d2-969f-5d90ef340b6a_wxs_gdc_realn.bam 39643076597 BAM harmonized CPTAC3 c38f1f62-a3fb-4a49-a51b-8ff31ececee1 dab1be6c12660ccb4b3e9c8c18304bbb { 'aliquot_tag': 'ALQ_26b0a261', 'gdc_sample_type': 'Primary Tumor' } -C3L-03622.ANN_d2441ba6.RNA-Seq.chimeric.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 6227b161-8d0f-4d43-97f2-04cf5a8a2113.rna_seq.chimeric.gdc_realn.bam 283867474 BAM chimeric harmonized CPTAC3 12f97245-6a97-40de-a97f-fb5bdb54f432 13792b32a97d88893d9c31b9437eb115 { 'aliquot_tag': 'ANN_d2441ba6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03622.ANN_d2441ba6.RNA-Seq.genomic.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 6227b161-8d0f-4d43-97f2-04cf5a8a2113.rna_seq.genomic.gdc_realn.bam 9154532475 BAM genomic harmonized CPTAC3 c64296fc-0e46-46c5-85a3-0104d470ec98 10033af4b1f063554b48936aa940b948 { 'aliquot_tag': 'ANN_d2441ba6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03622.ANN_d2441ba6.RNA-Seq.R1_L008.T C3L-03622 PDA RNA-Seq tumor CPT0198520026 200807_UNC32-K00270_0255_AHHY2WBBXY_CCTTCACC-GACGCTCC_S13_L008_R1_001.fastq.gz 3685200138 FASTQ R1_L008 unaligned CPTAC3 7edc8bc7-80fc-466d-bae6-ea92952dc276 12bf08494f7a147f1af2757ee04e6365 { 'aliquot_tag': 'ANN_d2441ba6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03622.ANN_d2441ba6.RNA-Seq.R2_L008.T C3L-03622 PDA RNA-Seq tumor CPT0198520026 200807_UNC32-K00270_0255_AHHY2WBBXY_CCTTCACC-GACGCTCC_S13_L008_R2_001.fastq.gz 4305534457 FASTQ R2_L008 unaligned CPTAC3 71eca917-c9e4-4e30-b6c6-87ab271d4005 0fac15fd527557478eedf1ee97aec220 { 'aliquot_tag': 'ANN_d2441ba6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03622.ANN_d2441ba6.RNA-Seq.transcriptome.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 6227b161-8d0f-4d43-97f2-04cf5a8a2113.rna_seq.transcriptome.gdc_realn.bam 9612606897 BAM transcriptome harmonized CPTAC3 64a3e10e-e2ad-447c-9baa-720635d30a30 3aa2c8eafb47f5e2343c040b3b08936d { 'aliquot_tag': 'ANN_d2441ba6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-03622.ANN_d2441ba6.RNA-Seq.chimeric.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 96ce0994-4d78-4deb-aaa7-5d0d66bce288.rna_seq.chimeric.gdc_realn.bam 283926344 BAM chimeric harmonized CPTAC3 c34261e7-ceff-4840-9b30-2fc964b959b9 9454faeaa45dd080ae4b3b4cd9aaf605 { 'aliquot_tag': 'ANN_d2441ba6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-03622.ANN_d2441ba6.RNA-Seq.genomic.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 96ce0994-4d78-4deb-aaa7-5d0d66bce288.rna_seq.genomic.gdc_realn.bam 9167614712 BAM genomic harmonized CPTAC3 9ee4bb9f-2131-4c62-b487-179328390da5 cc0c784cf7c300bab3ad8d9de532741e { 'aliquot_tag': 'ANN_d2441ba6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-03622.ANN_d2441ba6.RNA-Seq.R1_L008.T C3L-03622 PDA RNA-Seq tumor CPT0198520026 200807_UNC32-K00270_0255_AHHY2WBBXY_CCTTCACC-GACGCTCC_S13_L008_R1_001.fastq.gz 3685200138 FASTQ R1_L008 unaligned CPTAC3 7edc8bc7-80fc-466d-bae6-ea92952dc276 12bf08494f7a147f1af2757ee04e6365 { 'aliquot_tag': 'ANN_d2441ba6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L008' } +C3L-03622.ANN_d2441ba6.RNA-Seq.R2_L008.T C3L-03622 PDA RNA-Seq tumor CPT0198520026 200807_UNC32-K00270_0255_AHHY2WBBXY_CCTTCACC-GACGCTCC_S13_L008_R2_001.fastq.gz 4305534457 FASTQ R2_L008 unaligned CPTAC3 71eca917-c9e4-4e30-b6c6-87ab271d4005 0fac15fd527557478eedf1ee97aec220 { 'aliquot_tag': 'ANN_d2441ba6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L008' } +C3L-03622.ANN_d2441ba6.RNA-Seq.transcriptome.T.hg38 C3L-03622 PDA RNA-Seq tumor CPT0198520026 96ce0994-4d78-4deb-aaa7-5d0d66bce288.rna_seq.transcriptome.gdc_realn.bam 10845433506 BAM transcriptome harmonized CPTAC3 efbf3955-8ce8-43e7-adf3-98c8b532a2c0 0b98a6c5445a23fde3ead842372bca15 { 'aliquot_tag': 'ANN_d2441ba6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } C3L-03622.DUP_223c8fd2.WXS.T C3L-03622 PDA WXS tumor CPT0198520030 CPT0198520030.WholeExome.RP-1303.bam 22234685604 BAM aligned CPTAC3 87220180-a56d-47d1-9c0f-f7d15f66e16b 429913105b9d95db2bad7cd0c73c7b09 { 'aliquot_tag': 'DUP_223c8fd2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03622.DUP_223c8fd2.WXS.T.hg38 C3L-03622 PDA WXS tumor CPT0198520030 29544829-4515-4a88-bb93-480bae55d8f6_wxs_gdc_realn.bam 31513261886 BAM harmonized CPTAC3 acc533f2-f879-437d-ad63-4da6676c5558 a3a792d58baba0ead763535e18b68725 { 'aliquot_tag': 'DUP_223c8fd2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03622.DUP_42fb0637.WXS.T C3L-03622 PDA WXS tumor CPT0198520029 CPT0198520029.WholeExome.RP-1303.bam 23496699177 BAM aligned CPTAC3 46b67bf0-1622-4e46-8e01-172a76610f1e 4d791ba16e4214dea5ed5f351284cd39 { 'aliquot_tag': 'DUP_42fb0637', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } @@ -13699,9 +14578,9 @@ C3L-03628.MethArray.Red.T C3L-03628 PDA Methylation Array tumor CPT0198700008 20 C3L-03628.miRNA-Seq.T C3L-03628 PDA miRNA-Seq tumor CPT0198700011 190712_UNC32-K00270_0192_BH7HL3BBXY_TTAGGC_S26_L005_R1_001.unaln.bam 216539200 BAM unaligned CPTAC3 52dde65c-4875-4d54-b53f-eed554f095ae 4aa7533ea1de95d81d1867d046d29b97 { 'aliquot_tag': 'ALQ_50052fad', 'gdc_sample_type': 'Primary Tumor' } C3L-03628.miRNA-Seq.T.hg38 C3L-03628 PDA miRNA-Seq tumor CPT0198700011 dc360683-4dda-4c0a-b235-0f9eea5d1112_mirnaseq_gdc_realn.bam 245874286 BAM harmonized CPTAC3 d43af213-0cf9-437d-95f1-db449cb1248f 90bb0fd0a3b5f0359ceebe7a66067b2f { 'aliquot_tag': 'ALQ_50052fad', 'gdc_sample_type': 'Primary Tumor' } C3L-03628.RNA-Seq.chimeric.T.hg38 C3L-03628 PDA RNA-Seq tumor CPT0198700011 f6a3f0fd-1070-44c7-a1ba-fdbbe8e43b14.rna_seq.chimeric.gdc_realn.bam 34222759 BAM chimeric harmonized CPTAC3 bdb1246d-ef24-4859-bfa6-acb9155036fb 6f6e257840b3d02e7674c2cf0c11209f { 'aliquot_tag': 'ALQ_50052fad', 'gdc_sample_type': 'Primary Tumor' } -C3L-03628.RNA-Seq.genomic.T.hg38 C3L-03628 PDA RNA-Seq tumor CPT0198700011 f6a3f0fd-1070-44c7-a1ba-fdbbe8e43b14.rna_seq.genomic.gdc_realn.bam 8039999601 BAM genomic harmonized CPTAC3 5a70cb2b-0848-4a01-9360-0b3c3d3b3fc3 61c38f5527c849d4424b181c7220d72f { 'aliquot_tag': 'ALQ_50052fad', 'gdc_sample_type': 'Primary Tumor' } -C3L-03628.RNA-Seq.R1_L004.T C3L-03628 PDA RNA-Seq tumor CPT0198700011 190621_UNC32-K00270_0184_AH7CLLBBXY_AACAGGTT-ATACCAAG_S16_L004_R1_001.fastq.gz 3560940102 FASTQ R1_L004 unaligned CPTAC3 59922327-2842-491b-ae57-c7bacc87c47c 757fe171bddf36d005faf2cf04017050 { 'aliquot_tag': 'ALQ_50052fad', 'gdc_sample_type': 'Primary Tumor' } -C3L-03628.RNA-Seq.R2_L004.T C3L-03628 PDA RNA-Seq tumor CPT0198700011 190621_UNC32-K00270_0184_AH7CLLBBXY_AACAGGTT-ATACCAAG_S16_L004_R2_001.fastq.gz 4051349752 FASTQ R2_L004 unaligned CPTAC3 49d41fd0-4d39-428e-be37-3c7193bbee85 45168a75f5f9399f9a2d557909e3e524 { 'aliquot_tag': 'ALQ_50052fad', 'gdc_sample_type': 'Primary Tumor' } +C3L-03628.RNA-Seq.genomic.T.hg38 C3L-03628 PDA RNA-Seq tumor CPT0198700011 f6a3f0fd-1070-44c7-a1ba-fdbbe8e43b14.rna_seq.genomic.gdc_realn.bam 8039999601 BAM genomic harmonized CPTAC3 29f9f1e1-1b3c-4316-9761-7bfa96a4a2a9 61c38f5527c849d4424b181c7220d72f { 'aliquot_tag': 'ALQ_50052fad', 'gdc_sample_type': 'Primary Tumor' } +C3L-03628.RNA-Seq.R1_L004.T C3L-03628 PDA RNA-Seq tumor CPT0198700011 190621_UNC32-K00270_0184_AH7CLLBBXY_AACAGGTT-ATACCAAG_S16_L004_R1_001.fastq.gz 3560940102 FASTQ R1_L004 unaligned CPTAC3 59922327-2842-491b-ae57-c7bacc87c47c 757fe171bddf36d005faf2cf04017050 { 'aliquot_tag': 'ALQ_50052fad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-03628.RNA-Seq.R2_L004.T C3L-03628 PDA RNA-Seq tumor CPT0198700011 190621_UNC32-K00270_0184_AH7CLLBBXY_AACAGGTT-ATACCAAG_S16_L004_R2_001.fastq.gz 4051349752 FASTQ R2_L004 unaligned CPTAC3 49d41fd0-4d39-428e-be37-3c7193bbee85 45168a75f5f9399f9a2d557909e3e524 { 'aliquot_tag': 'ALQ_50052fad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-03628.RNA-Seq.transcriptome.T.hg38 C3L-03628 PDA RNA-Seq tumor CPT0198700011 f6a3f0fd-1070-44c7-a1ba-fdbbe8e43b14.rna_seq.transcriptome.gdc_realn.bam 9799925371 BAM transcriptome harmonized CPTAC3 ecb509bc-1c47-4760-ba37-e2cb3435cfd1 07328f2adc8d0441fb90b1dc233df530 { 'aliquot_tag': 'ALQ_50052fad', 'gdc_sample_type': 'Primary Tumor' } C3L-03628.Targeted.T C3L-03628 PDA Targeted Sequencing tumor CPT0198700008 CPT0198700008.CustomSelection.RP-1303.PDO-18786.bam 4631118603 BAM aligned CPTAC3 e0d3090c-6e82-4f5e-a38b-a3c3e2f82397 694c0c4d7d24efdd317ab50ed60fe421 { 'aliquot_tag': 'ALQ_30c2a648', 'gdc_sample_type': 'Primary Tumor' } C3L-03628.Targeted.T.hg38 C3L-03628 PDA Targeted Sequencing tumor CPT0198700008 cb70b1fc-f720-49a2-bc24-0f14fe2a09d1_targetedsequencing_gdc_realn.bam 6434773505 BAM harmonized CPTAC3 b4691887-13d5-4843-a29f-44976d9e3c38 8a3d01b372b4dfe142d13f515a9a1eaf { 'aliquot_tag': 'ALQ_30c2a648', 'gdc_sample_type': 'Primary Tumor' } @@ -13713,29 +14592,32 @@ C3L-03628.WXS.N C3L-03628 PDA WXS blood_normal CPT0198740002 CPT0198740002.Whole C3L-03628.WXS.N.hg38 C3L-03628 PDA WXS blood_normal CPT0198740002 eb7b05e5-5bdf-4428-86dc-c3db5026f54d_wxs_gdc_realn.bam 39365199085 BAM harmonized CPTAC3 dd82c39e-22e0-46eb-a844-2fe349b189ca 28322c6619a38f31234cf3ad63f599ef { 'aliquot_tag': 'ALQ_2597e996', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03628.WXS.T C3L-03628 PDA WXS tumor CPT0198700008 CPT0198700008.WholeExome.RP-1303.bam 52288761525 BAM aligned CPTAC3 6e2d92da-2d9c-4634-b2da-e04534bd2fcc 2ae31f884c27ecd80f58132fda566f32 { 'aliquot_tag': 'ALQ_30c2a648', 'gdc_sample_type': 'Primary Tumor' } C3L-03628.WXS.T.hg38 C3L-03628 PDA WXS tumor CPT0198700008 cb70b1fc-f720-49a2-bc24-0f14fe2a09d1_wxs_gdc_realn.bam 72532663191 BAM harmonized CPTAC3 d40063dc-8e93-4938-8ebc-29e56169bb36 1e7d22e2b97179eff14dd4aeb25facb8 { 'aliquot_tag': 'ALQ_30c2a648', 'gdc_sample_type': 'Primary Tumor' } -C3L-03629.ANN_d902e6dc.RNA-Seq.chimeric.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 390162bf-8832-4160-99d4-f844d960e1dd.rna_seq.chimeric.gdc_realn.bam 226367994 BAM chimeric harmonized CPTAC3 1c16ec0e-9413-4411-ba50-c578e621188c 11a60efb22c6c9b9958f6ecf410e0ee2 { 'aliquot_tag': 'ANN_d902e6dc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03629.ANN_d902e6dc.RNA-Seq.genomic.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 390162bf-8832-4160-99d4-f844d960e1dd.rna_seq.genomic.gdc_realn.bam 10332204498 BAM genomic harmonized CPTAC3 150d0515-cb89-40d5-81c4-e79360711375 753b2af76f3c15bf430412e572c969a1 { 'aliquot_tag': 'ANN_d902e6dc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03629.ANN_d902e6dc.RNA-Seq.R1_L006.T C3L-03629 PDA RNA-Seq tumor CPT0198810030 200807_UNC32-K00270_0255_AHHY2WBBXY_GACGTCTT-GGTTCACC_S6_L006_R1_001.fastq.gz 3422136785 FASTQ R1_L006 unaligned CPTAC3 7fecdbc1-0f98-4335-bf75-3036a9d9ab9e 22354d5ee834f218f1f2d5a1560218c7 { 'aliquot_tag': 'ANN_d902e6dc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03629.ANN_d902e6dc.RNA-Seq.R2_L006.T C3L-03629 PDA RNA-Seq tumor CPT0198810030 200807_UNC32-K00270_0255_AHHY2WBBXY_GACGTCTT-GGTTCACC_S6_L006_R2_001.fastq.gz 3771090019 FASTQ R2_L006 unaligned CPTAC3 74d67b6a-cbb9-458f-b5b6-c498e4e559fc 86a2a6f11f211ae31e3fc7921761788a { 'aliquot_tag': 'ANN_d902e6dc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3L-03629.ANN_d902e6dc.RNA-Seq.transcriptome.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 390162bf-8832-4160-99d4-f844d960e1dd.rna_seq.transcriptome.gdc_realn.bam 7661015381 BAM transcriptome harmonized CPTAC3 f934a826-297d-416d-86e1-630d5e7dcddc 4d03aae6b4dc3ade8c490c407541e8eb { 'aliquot_tag': 'ANN_d902e6dc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-03629.ANN_d902e6dc.RNA-Seq.chimeric.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 d460f111-7b35-4f12-a50e-40d88460ccbb.rna_seq.chimeric.gdc_realn.bam 226394775 BAM chimeric harmonized CPTAC3 ea472771-ef4a-44aa-9a1f-eba227d1da9d 1bb5cc004e8b5739ccdd8f85b4d774e6 { 'aliquot_tag': 'ANN_d902e6dc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-03629.ANN_d902e6dc.RNA-Seq.genomic.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 d460f111-7b35-4f12-a50e-40d88460ccbb.rna_seq.genomic.gdc_realn.bam 10359816613 BAM genomic harmonized CPTAC3 bf115cea-55a3-4054-a7e5-77a301919c38 7b165d45b52da1db9d82e8a3effa5f79 { 'aliquot_tag': 'ANN_d902e6dc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3L-03629.ANN_d902e6dc.RNA-Seq.R1_L006.T C3L-03629 PDA RNA-Seq tumor CPT0198810030 200807_UNC32-K00270_0255_AHHY2WBBXY_GACGTCTT-GGTTCACC_S6_L006_R1_001.fastq.gz 3422136785 FASTQ R1_L006 unaligned CPTAC3 7fecdbc1-0f98-4335-bf75-3036a9d9ab9e 22354d5ee834f218f1f2d5a1560218c7 { 'aliquot_tag': 'ANN_d902e6dc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L006' } +C3L-03629.ANN_d902e6dc.RNA-Seq.R2_L006.T C3L-03629 PDA RNA-Seq tumor CPT0198810030 200807_UNC32-K00270_0255_AHHY2WBBXY_GACGTCTT-GGTTCACC_S6_L006_R2_001.fastq.gz 3771090019 FASTQ R2_L006 unaligned CPTAC3 74d67b6a-cbb9-458f-b5b6-c498e4e559fc 86a2a6f11f211ae31e3fc7921761788a { 'aliquot_tag': 'ANN_d902e6dc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L006' } +C3L-03629.ANN_d902e6dc.RNA-Seq.transcriptome.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810030 d460f111-7b35-4f12-a50e-40d88460ccbb.rna_seq.transcriptome.gdc_realn.bam 8617873999 BAM transcriptome harmonized CPTAC3 8311c360-c9f6-40a1-8c75-46a038aef3cf 39fb484d7254e960f20ad0860a4ba1ae { 'aliquot_tag': 'ANN_d902e6dc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } C3L-03629.DUP_400bb766.WXS.T C3L-03629 PDA WXS tumor CPT0198810033 CPT0198810033.WholeExome.RP-1303.bam 20742950512 BAM aligned CPTAC3 22fe454d-fd90-4bf3-9ba5-084c3ce0b50b 18d2457995514a0df3034ab2b68b7a63 { 'aliquot_tag': 'DUP_400bb766', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03629.DUP_400bb766.WXS.T.hg38 C3L-03629 PDA WXS tumor CPT0198810033 4c5320d3-3d57-4115-8865-3cb140cb3815_wxs_gdc_realn.bam 28904578878 BAM harmonized CPTAC3 d0bfb95d-1cd4-454f-846a-343eeece9886 aa8454f338902ecbc3c33f3e7adfbe2b { 'aliquot_tag': 'DUP_400bb766', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3L-03629.DUP_9643701b.RNA-Seq.chimeric.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810040 977b822e-c8c3-4b04-8939-83ab3f222310.rna_seq.chimeric.gdc_realn.bam 267510241 BAM chimeric harmonized CPTAC3 0b28579a-259f-445a-8c32-73cbdc194df8 a371010a56aa536868271736f4f48974 { 'aliquot_tag': 'DUP_9643701b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-03629.DUP_9643701b.RNA-Seq.genomic.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810040 977b822e-c8c3-4b04-8939-83ab3f222310.rna_seq.genomic.gdc_realn.bam 6397383970 BAM genomic harmonized CPTAC3 1e5c9ae3-c57b-4dfd-b51d-9ed74d5dc5a4 29d76b677a203d60b24a3f6fd1aeee12 { 'aliquot_tag': 'DUP_9643701b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3L-03629.DUP_9643701b.RNA-Seq.R1_L002.T C3L-03629 PDA RNA-Seq tumor CPT0198810040 220126_UNC32-K00270_0314_AHMVJ7BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R1_001.fastq.gz 2898312783 FASTQ R1_L002 unaligned CPTAC3 7a35a568-320b-451a-b23f-8c0d181afcf8 0bebbffcc25a0239f140efe58b5cdd39 { 'aliquot_tag': 'DUP_9643701b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L002' } +C3L-03629.DUP_9643701b.RNA-Seq.R2_L002.T C3L-03629 PDA RNA-Seq tumor CPT0198810040 220126_UNC32-K00270_0314_AHMVJ7BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R2_001.fastq.gz 3193547096 FASTQ R2_L002 unaligned CPTAC3 d5b5a4fd-2c7a-4551-9591-dab55b93cd47 22aca1b1cd2aa61f9f82934f1f2ec1c4 { 'aliquot_tag': 'DUP_9643701b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L002' } +C3L-03629.DUP_9643701b.RNA-Seq.transcriptome.T.hg38 C3L-03629 PDA RNA-Seq tumor CPT0198810040 977b822e-c8c3-4b04-8939-83ab3f222310.rna_seq.transcriptome.gdc_realn.bam 7894499938 BAM transcriptome harmonized CPTAC3 cd925ca9-c6af-4003-aa38-71820abb9a17 06fe9ecd2f446a7af5dc4b4fe34954b4 { 'aliquot_tag': 'DUP_9643701b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3L-03629.DUP_a9681253.WXS.T C3L-03629 PDA WXS tumor CPT0198810035 CPT0198810035.WholeExome.RP-1303.bam 40397390794 BAM aligned CPTAC3 673e93c0-f62c-435d-93f0-1e3647e70ffb c4e9056f291837fecfd11b4667ce991b { 'aliquot_tag': 'DUP_a9681253', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03629.DUP_a9681253.WXS.T.hg38 C3L-03629 PDA WXS tumor CPT0198810035 a10567d2-756b-4fdb-98d5-0c8cdc98e4cf_wxs_gdc_realn.bam 55328130665 BAM harmonized CPTAC3 6d1154ab-5a61-459a-adad-9a17b1be0c59 72f91289be265be886841f095520864f { 'aliquot_tag': 'DUP_a9681253', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03629.DUP_d4c15b43.WXS.N C3L-03629 PDA WXS blood_normal CPT0198840002 CPT0198840002.WholeExome.RP-1303.bam 30008291625 BAM aligned CPTAC3 c0414b4a-466c-4d46-b07e-1f6ac934e8d3 fa55c3d73e8b9bcec961c7b23bdc5995 { 'aliquot_tag': 'DUP_d4c15b43', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03629.DUP_d4c15b43.WXS.N.hg38 C3L-03629 PDA WXS blood_normal CPT0198840002 3047512c-6e80-43e9-abe6-23c303748fb5_wxs_gdc_realn.bam 41585212321 BAM harmonized CPTAC3 c28a3518-a775-405b-b8c9-759a677ea6d2 aa9602cf9886941b626e5d30f98199c2 { 'aliquot_tag': 'DUP_d4c15b43', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03629.DUP_de6f22c5.WXS.T C3L-03629 PDA WXS tumor CPT0198810034 CPT0198810034.WholeExome.RP-1303.bam 20584068641 BAM aligned CPTAC3 9f5b4209-578b-488b-b98e-1dced95e4f58 59e44665af92d0533b85e4a2fdf0c4d3 { 'aliquot_tag': 'DUP_de6f22c5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3L-03629.DUP_de6f22c5.WXS.T.hg38 C3L-03629 PDA WXS tumor CPT0198810034 de5de03e-629e-44d0-ba43-3dd9a91e7bcd_wxs_gdc_realn.bam 28495895345 BAM harmonized CPTAC3 5a321292-b48b-4fee-8472-4ad443c8a748 cba2185967fe425944325f58986912e2 { 'aliquot_tag': 'DUP_de6f22c5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3L-03629.RNA-Seq.R1_L002.T C3L-03629 PDA RNA-Seq tumor CPT0198810040 220126_UNC32-K00270_0314_AHMVJ7BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R1_001.fastq.gz 2898312783 FASTQ R1_L002 unaligned CPTAC3 7a35a568-320b-451a-b23f-8c0d181afcf8 0bebbffcc25a0239f140efe58b5cdd39 { 'aliquot_tag': 'ALQ_9643701b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03629.RNA-Seq.R2_L002.T C3L-03629 PDA RNA-Seq tumor CPT0198810040 220126_UNC32-K00270_0314_AHMVJ7BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R2_001.fastq.gz 3193547096 FASTQ R2_L002 unaligned CPTAC3 d5b5a4fd-2c7a-4551-9591-dab55b93cd47 22aca1b1cd2aa61f9f82934f1f2ec1c4 { 'aliquot_tag': 'ALQ_9643701b', 'gdc_sample_type': 'Primary Tumor' } C3L-03630.MethArray.Green.T C3L-03630 PDA Methylation Array tumor CPT0198910008 203561450008_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 d268937b-f28f-4bfe-bab5-dc3fe674d81a f4a71092e2cb3bff1a8d6e7231aaa53f { 'aliquot_tag': 'ALQ_37a8ee88', 'gdc_sample_type': 'Primary Tumor' } C3L-03630.MethArray.Red.T C3L-03630 PDA Methylation Array tumor CPT0198910008 203561450008_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 53dd3494-bb5c-45a2-b6d4-c5cf5938393c f639c9e7e929c680f34b569ddbdd43b1 { 'aliquot_tag': 'ALQ_37a8ee88', 'gdc_sample_type': 'Primary Tumor' } C3L-03630.miRNA-Seq.T C3L-03630 PDA miRNA-Seq tumor CPT0198910011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACAGTG_S28_L005_R1_001.unaln.bam 201073157 BAM unaligned CPTAC3 87eb915e-ce48-4726-b06f-df2635e2cd8c fa5d0ebba13efac7701b81ccbf3bcfb6 { 'aliquot_tag': 'ALQ_576f676d', 'gdc_sample_type': 'Primary Tumor' } C3L-03630.miRNA-Seq.T.hg38 C3L-03630 PDA miRNA-Seq tumor CPT0198910011 8beb0d4d-1339-4e89-a6b4-bc35029379d2_mirnaseq_gdc_realn.bam 229419543 BAM harmonized CPTAC3 01acce44-2d0b-40d2-b51b-dbfbee6a2411 573ef022697faafb024ff4217c5f572d { 'aliquot_tag': 'ALQ_576f676d', 'gdc_sample_type': 'Primary Tumor' } C3L-03630.RNA-Seq.chimeric.T.hg38 C3L-03630 PDA RNA-Seq tumor CPT0198910011 2c882633-1e4a-447c-aa1f-005f6548160d.rna_seq.chimeric.gdc_realn.bam 34888806 BAM chimeric harmonized CPTAC3 eb50e8f2-d8bf-45af-bafd-a8704b774ab3 bd29a1267660cc56594144dfd3e37eeb { 'aliquot_tag': 'ALQ_576f676d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03630.RNA-Seq.genomic.T.hg38 C3L-03630 PDA RNA-Seq tumor CPT0198910011 2c882633-1e4a-447c-aa1f-005f6548160d.rna_seq.genomic.gdc_realn.bam 8589298090 BAM genomic harmonized CPTAC3 34153373-7278-449d-828d-d9249de70d2e d8722f4f7d53bedb62c7b0271ef1f938 { 'aliquot_tag': 'ALQ_576f676d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03630.RNA-Seq.R1_L008.T C3L-03630 PDA RNA-Seq tumor CPT0198910011 190621_UNC32-K00270_0185_BH7G72BBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 4088071151 FASTQ R1_L008 unaligned CPTAC3 abf20b14-f42b-4ee3-9a92-47a0bb993abc 531fa079b9a489d46355fcf1de7759bd { 'aliquot_tag': 'ALQ_576f676d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03630.RNA-Seq.R2_L008.T C3L-03630 PDA RNA-Seq tumor CPT0198910011 190621_UNC32-K00270_0185_BH7G72BBXY_CAACAATG-CTTCACGG_S30_L008_R2_001.fastq.gz 4287119936 FASTQ R2_L008 unaligned CPTAC3 3f467916-1242-4b97-b826-b1d8ccf53dba 0bb5d253d6c7a5fcde08220bae0d1c69 { 'aliquot_tag': 'ALQ_576f676d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03630.RNA-Seq.genomic.T.hg38 C3L-03630 PDA RNA-Seq tumor CPT0198910011 2c882633-1e4a-447c-aa1f-005f6548160d.rna_seq.genomic.gdc_realn.bam 8589298090 BAM genomic harmonized CPTAC3 040abe19-b55d-4aae-a657-328890f61b7c d8722f4f7d53bedb62c7b0271ef1f938 { 'aliquot_tag': 'ALQ_576f676d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03630.RNA-Seq.R1_L008.T C3L-03630 PDA RNA-Seq tumor CPT0198910011 190621_UNC32-K00270_0185_BH7G72BBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 4088071151 FASTQ R1_L008 unaligned CPTAC3 abf20b14-f42b-4ee3-9a92-47a0bb993abc 531fa079b9a489d46355fcf1de7759bd { 'aliquot_tag': 'ALQ_576f676d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-03630.RNA-Seq.R2_L008.T C3L-03630 PDA RNA-Seq tumor CPT0198910011 190621_UNC32-K00270_0185_BH7G72BBXY_CAACAATG-CTTCACGG_S30_L008_R2_001.fastq.gz 4287119936 FASTQ R2_L008 unaligned CPTAC3 3f467916-1242-4b97-b826-b1d8ccf53dba 0bb5d253d6c7a5fcde08220bae0d1c69 { 'aliquot_tag': 'ALQ_576f676d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-03630.RNA-Seq.transcriptome.T.hg38 C3L-03630 PDA RNA-Seq tumor CPT0198910011 2c882633-1e4a-447c-aa1f-005f6548160d.rna_seq.transcriptome.gdc_realn.bam 10889059802 BAM transcriptome harmonized CPTAC3 64e38c47-f372-4cc4-b2c7-13c74593f22a 9baa17a39170f06dd33dc94144d011ed { 'aliquot_tag': 'ALQ_576f676d', 'gdc_sample_type': 'Primary Tumor' } C3L-03630.Targeted.T C3L-03630 PDA Targeted Sequencing tumor CPT0198910008 CPT0198910008.CustomSelection.RP-1303.PDO-18786.bam 6155756525 BAM aligned CPTAC3 8349c74a-a611-4a52-8657-5af5bb64bf69 93acb2bb8e91bdb177631d6ad7592abf { 'aliquot_tag': 'ALQ_37a8ee88', 'gdc_sample_type': 'Primary Tumor' } C3L-03630.Targeted.T.hg38 C3L-03630 PDA Targeted Sequencing tumor CPT0198910008 d2db9a6c-ad14-496e-accd-afcbf09093e7_targetedsequencing_gdc_realn.bam 8646899840 BAM harmonized CPTAC3 60989166-029d-4ec8-b306-85028e72fdf1 6855e440611dbe552e1c37513641cb76 { 'aliquot_tag': 'ALQ_37a8ee88', 'gdc_sample_type': 'Primary Tumor' } @@ -13753,8 +14635,8 @@ C3L-03632.miRNA-Seq.T C3L-03632 PDA miRNA-Seq tumor CPT0238440011 190828_UNC32-K C3L-03632.miRNA-Seq.T.hg38 C3L-03632 PDA miRNA-Seq tumor CPT0238440011 34d10f3a-eb92-4533-b426-992e0f44d99a_mirnaseq_gdc_realn.bam 238164459 BAM harmonized CPTAC3 b6e98d86-45c6-48c0-ae10-02568713e6a9 748bed67ca2faeba96d86ed88c7dec6f { 'aliquot_tag': 'ALQ_8b5cdbce', 'gdc_sample_type': 'Primary Tumor' } C3L-03632.RNA-Seq.chimeric.T.hg38 C3L-03632 PDA RNA-Seq tumor CPT0238440011 7e6e7cd0-2776-44ac-abf0-0d94d8053334.rna_seq.chimeric.gdc_realn.bam 28361128 BAM chimeric harmonized CPTAC3 19392957-b05c-4b53-ab81-b6dcd3341387 dba5061f514081e38c188d469e790dc1 { 'aliquot_tag': 'ALQ_8b5cdbce', 'gdc_sample_type': 'Primary Tumor' } C3L-03632.RNA-Seq.genomic.T.hg38 C3L-03632 PDA RNA-Seq tumor CPT0238440011 7e6e7cd0-2776-44ac-abf0-0d94d8053334.rna_seq.genomic.gdc_realn.bam 7436410921 BAM genomic harmonized CPTAC3 d1ca9add-b4ba-4e6d-b78e-8362046466e7 765a4044b52ca804f505904c11ac0a6e { 'aliquot_tag': 'ALQ_8b5cdbce', 'gdc_sample_type': 'Primary Tumor' } -C3L-03632.RNA-Seq.R1_L005.T C3L-03632 PDA RNA-Seq tumor CPT0238440011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGTCGGA-GCTTGCGC_S17_L005_R1_001.fastq.gz 3348955246 FASTQ R1_L005 unaligned CPTAC3 c82f2b79-f7ea-4238-9d3a-fdbe0b526d34 490576e1864bda5da5c8b35d31c6e689 { 'aliquot_tag': 'ALQ_8b5cdbce', 'gdc_sample_type': 'Primary Tumor' } -C3L-03632.RNA-Seq.R2_L005.T C3L-03632 PDA RNA-Seq tumor CPT0238440011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGTCGGA-GCTTGCGC_S17_L005_R2_001.fastq.gz 3784048246 FASTQ R2_L005 unaligned CPTAC3 ac072a22-6ff9-40e1-9fe1-d7902d8977fc 8dff9c98688864c5ae5be2e79afce97f { 'aliquot_tag': 'ALQ_8b5cdbce', 'gdc_sample_type': 'Primary Tumor' } +C3L-03632.RNA-Seq.R1_L005.T C3L-03632 PDA RNA-Seq tumor CPT0238440011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGTCGGA-GCTTGCGC_S17_L005_R1_001.fastq.gz 3348955246 FASTQ R1_L005 unaligned CPTAC3 c82f2b79-f7ea-4238-9d3a-fdbe0b526d34 490576e1864bda5da5c8b35d31c6e689 { 'aliquot_tag': 'ALQ_8b5cdbce', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-03632.RNA-Seq.R2_L005.T C3L-03632 PDA RNA-Seq tumor CPT0238440011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGTCGGA-GCTTGCGC_S17_L005_R2_001.fastq.gz 3784048246 FASTQ R2_L005 unaligned CPTAC3 ac072a22-6ff9-40e1-9fe1-d7902d8977fc 8dff9c98688864c5ae5be2e79afce97f { 'aliquot_tag': 'ALQ_8b5cdbce', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-03632.RNA-Seq.transcriptome.T.hg38 C3L-03632 PDA RNA-Seq tumor CPT0238440011 7e6e7cd0-2776-44ac-abf0-0d94d8053334.rna_seq.transcriptome.gdc_realn.bam 9545303915 BAM transcriptome harmonized CPTAC3 4ca183cb-4c20-4760-ab68-6be4d0be959f 5aaa90fccd8f238572314ef80c516bd3 { 'aliquot_tag': 'ALQ_8b5cdbce', 'gdc_sample_type': 'Primary Tumor' } C3L-03632.Targeted.T C3L-03632 PDA Targeted Sequencing tumor CPT0238440008 CPT0238440008.CustomSelection.RP-1303.PDO-18786.bam 3995879921 BAM aligned CPTAC3 64e2304a-323c-454c-b5c7-957ac3c96813 46659096a8b5e9a2e6168c46bd5e7db9 { 'aliquot_tag': 'ALQ_eb9b522b', 'gdc_sample_type': 'Primary Tumor' } C3L-03632.Targeted.T.hg38 C3L-03632 PDA Targeted Sequencing tumor CPT0238440008 559c33be-d2ec-459b-b8bf-29f57ef07918_targetedsequencing_gdc_realn.bam 5671566319 BAM harmonized CPTAC3 73c0d4eb-1059-4b52-b64a-7f0f45813e4f f590941a2ebcd78da07f133a3f8e32f0 { 'aliquot_tag': 'ALQ_eb9b522b', 'gdc_sample_type': 'Primary Tumor' } @@ -13771,9 +14653,9 @@ C3L-03635.MethArray.Red.T C3L-03635 PDA Methylation Array tumor CPT0238530008 20 C3L-03635.miRNA-Seq.T C3L-03635 PDA miRNA-Seq tumor CPT0238530011 190712_UNC32-K00270_0192_BH7HL3BBXY_GTGAAA_S42_L005_R1_001.unaln.bam 287711876 BAM unaligned CPTAC3 357f25b0-bbc4-46e2-a22c-c58ded55fdf6 6bc77978f48d0c6f74fcb0394f274215 { 'aliquot_tag': 'ALQ_f220d47b', 'gdc_sample_type': 'Primary Tumor' } C3L-03635.miRNA-Seq.T.hg38 C3L-03635 PDA miRNA-Seq tumor CPT0238530011 fab92cad-1800-418a-b6dd-24fc289ddd0b_mirnaseq_gdc_realn.bam 326293982 BAM harmonized CPTAC3 4f460bd7-5278-4b57-b395-7658f31cd5db 360d942b6b7906f33347ea620c13b9c7 { 'aliquot_tag': 'ALQ_f220d47b', 'gdc_sample_type': 'Primary Tumor' } C3L-03635.RNA-Seq.chimeric.T.hg38 C3L-03635 PDA RNA-Seq tumor CPT0238530011 299b7166-e3fb-4c2a-b398-b83d759fec76.rna_seq.chimeric.gdc_realn.bam 35098372 BAM chimeric harmonized CPTAC3 5290d988-76b8-440a-be30-e40d7d3f392b acf9fb3d57ba2a7fa8013c4d79f91e70 { 'aliquot_tag': 'ALQ_f220d47b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03635.RNA-Seq.genomic.T.hg38 C3L-03635 PDA RNA-Seq tumor CPT0238530011 299b7166-e3fb-4c2a-b398-b83d759fec76.rna_seq.genomic.gdc_realn.bam 8493598930 BAM genomic harmonized CPTAC3 e0c3d67b-3f9c-4859-b5e7-081e46ed36b1 457adcd4acafc895616ac0f721bfcedd { 'aliquot_tag': 'ALQ_f220d47b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03635.RNA-Seq.R1_L005.T C3L-03635 PDA RNA-Seq tumor CPT0238530011 190621_UNC32-K00270_0185_BH7G72BBXY_TTCCTGTT-AGTATCTT_S20_L005_R1_001.fastq.gz 4130886211 FASTQ R1_L005 unaligned CPTAC3 e6d23182-aa4a-496e-b75f-2fec19d6bce0 ecd90d1e18773b32006bb2f2c19de4a5 { 'aliquot_tag': 'ALQ_f220d47b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03635.RNA-Seq.R2_L005.T C3L-03635 PDA RNA-Seq tumor CPT0238530011 190621_UNC32-K00270_0185_BH7G72BBXY_TTCCTGTT-AGTATCTT_S20_L005_R2_001.fastq.gz 4451462225 FASTQ R2_L005 unaligned CPTAC3 02a17205-4f12-46b3-8ea5-fa2c1d3c5282 8c5edffebbb8912219524c4da8ebdbc7 { 'aliquot_tag': 'ALQ_f220d47b', 'gdc_sample_type': 'Primary Tumor' } +C3L-03635.RNA-Seq.genomic.T.hg38 C3L-03635 PDA RNA-Seq tumor CPT0238530011 299b7166-e3fb-4c2a-b398-b83d759fec76.rna_seq.genomic.gdc_realn.bam 8493598930 BAM genomic harmonized CPTAC3 a7855ced-4a1f-491c-b029-8b386f024022 457adcd4acafc895616ac0f721bfcedd { 'aliquot_tag': 'ALQ_f220d47b', 'gdc_sample_type': 'Primary Tumor' } +C3L-03635.RNA-Seq.R1_L005.T C3L-03635 PDA RNA-Seq tumor CPT0238530011 190621_UNC32-K00270_0185_BH7G72BBXY_TTCCTGTT-AGTATCTT_S20_L005_R1_001.fastq.gz 4130886211 FASTQ R1_L005 unaligned CPTAC3 e6d23182-aa4a-496e-b75f-2fec19d6bce0 ecd90d1e18773b32006bb2f2c19de4a5 { 'aliquot_tag': 'ALQ_f220d47b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-03635.RNA-Seq.R2_L005.T C3L-03635 PDA RNA-Seq tumor CPT0238530011 190621_UNC32-K00270_0185_BH7G72BBXY_TTCCTGTT-AGTATCTT_S20_L005_R2_001.fastq.gz 4451462225 FASTQ R2_L005 unaligned CPTAC3 02a17205-4f12-46b3-8ea5-fa2c1d3c5282 8c5edffebbb8912219524c4da8ebdbc7 { 'aliquot_tag': 'ALQ_f220d47b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-03635.RNA-Seq.transcriptome.T.hg38 C3L-03635 PDA RNA-Seq tumor CPT0238530011 299b7166-e3fb-4c2a-b398-b83d759fec76.rna_seq.transcriptome.gdc_realn.bam 11431800716 BAM transcriptome harmonized CPTAC3 8b8909db-7f4f-4ff1-83f9-c25888246f7b 9dffea1be82aef0855518a8dc8f595fb { 'aliquot_tag': 'ALQ_f220d47b', 'gdc_sample_type': 'Primary Tumor' } C3L-03635.Targeted.T C3L-03635 PDA Targeted Sequencing tumor CPT0238530008 CPT0238530008.CustomSelection.RP-1303.PDO-18786.bam 4977296392 BAM aligned CPTAC3 9461fe2f-538f-428a-bc1b-7cd7ee3c272a 5491f66b8089e5bc12ecc445220ef3d0 { 'aliquot_tag': 'ALQ_92e75d9e', 'gdc_sample_type': 'Primary Tumor' } C3L-03635.Targeted.T.hg38 C3L-03635 PDA Targeted Sequencing tumor CPT0238530008 0afced53-4194-44c8-b4f5-a37c910c50a9_targetedsequencing_gdc_realn.bam 7145861939 BAM harmonized CPTAC3 d402b214-6256-427b-a75e-19b15c11a661 22af1ed6f0a3fadc4350491f03435f36 { 'aliquot_tag': 'ALQ_92e75d9e', 'gdc_sample_type': 'Primary Tumor' } @@ -13790,9 +14672,9 @@ C3L-03639.MethArray.Red.T C3L-03639 PDA Methylation Array tumor CPT0238610012 20 C3L-03639.miRNA-Seq.T C3L-03639 PDA miRNA-Seq tumor CPT0238610015 190828_UNC32-K00270_0200_BH7GVJBBXY_CTCAGA_S165_L008_R1_001.unaln.bam 242890877 BAM unaligned CPTAC3 325f7a6c-da2e-4463-a075-ad5d5673eb66 c85f0f5b92e0c4777ca688a071ed460e { 'aliquot_tag': 'ALQ_91931ac', 'gdc_sample_type': 'Primary Tumor' } C3L-03639.miRNA-Seq.T.hg38 C3L-03639 PDA miRNA-Seq tumor CPT0238610015 930b6301-6ef5-440a-ab17-2f9c77eedca5_mirnaseq_gdc_realn.bam 270090382 BAM harmonized CPTAC3 5b255f8b-1770-4098-8f51-d0bcbabfa6e7 e0a7bc74f393a2355ba9caa7172cceb2 { 'aliquot_tag': 'ALQ_91931ac', 'gdc_sample_type': 'Primary Tumor' } C3L-03639.RNA-Seq.chimeric.T.hg38 C3L-03639 PDA RNA-Seq tumor CPT0238610015 ff3a39f3-1244-475c-a094-9580d9d75fe0.rna_seq.chimeric.gdc_realn.bam 86745622 BAM chimeric harmonized CPTAC3 107da9a9-6d13-4c37-82e6-b513b85df502 918cb29a35566410f891b9c33506beff { 'aliquot_tag': 'ALQ_91931ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-03639.RNA-Seq.genomic.T.hg38 C3L-03639 PDA RNA-Seq tumor CPT0238610015 ff3a39f3-1244-475c-a094-9580d9d75fe0.rna_seq.genomic.gdc_realn.bam 10097807483 BAM genomic harmonized CPTAC3 0e8cbcc4-a8de-4785-bf99-fa0ad0cf8964 c2a332c178ab2f1a2ef824f7309eab84 { 'aliquot_tag': 'ALQ_91931ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-03639.RNA-Seq.R1_L003.T C3L-03639 PDA RNA-Seq tumor CPT0238610015 190614_UNC32-K00270_0182_BH7777BBXY_CGGACAAC-TCCGGATT_S9_L003_R1_001.fastq.gz 4127318283 FASTQ R1_L003 unaligned CPTAC3 78529b12-483f-4a95-95b1-22a760125a08 4949d8c8ec6c0093ac2864fbb3692420 { 'aliquot_tag': 'ALQ_91931ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-03639.RNA-Seq.R2_L003.T C3L-03639 PDA RNA-Seq tumor CPT0238610015 190614_UNC32-K00270_0182_BH7777BBXY_CGGACAAC-TCCGGATT_S9_L003_R2_001.fastq.gz 4652080851 FASTQ R2_L003 unaligned CPTAC3 71867229-fafe-45c5-bc56-344e7c4c0a79 93d44fb9d79a14cb63b46a57c072228e { 'aliquot_tag': 'ALQ_91931ac', 'gdc_sample_type': 'Primary Tumor' } +C3L-03639.RNA-Seq.genomic.T.hg38 C3L-03639 PDA RNA-Seq tumor CPT0238610015 ff3a39f3-1244-475c-a094-9580d9d75fe0.rna_seq.genomic.gdc_realn.bam 10097807483 BAM genomic harmonized CPTAC3 85baebdd-8866-4c2f-8d7b-4c537bebe5cf c2a332c178ab2f1a2ef824f7309eab84 { 'aliquot_tag': 'ALQ_91931ac', 'gdc_sample_type': 'Primary Tumor' } +C3L-03639.RNA-Seq.R1_L003.T C3L-03639 PDA RNA-Seq tumor CPT0238610015 190614_UNC32-K00270_0182_BH7777BBXY_CGGACAAC-TCCGGATT_S9_L003_R1_001.fastq.gz 4127318283 FASTQ R1_L003 unaligned CPTAC3 78529b12-483f-4a95-95b1-22a760125a08 4949d8c8ec6c0093ac2864fbb3692420 { 'aliquot_tag': 'ALQ_91931ac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-03639.RNA-Seq.R2_L003.T C3L-03639 PDA RNA-Seq tumor CPT0238610015 190614_UNC32-K00270_0182_BH7777BBXY_CGGACAAC-TCCGGATT_S9_L003_R2_001.fastq.gz 4652080851 FASTQ R2_L003 unaligned CPTAC3 71867229-fafe-45c5-bc56-344e7c4c0a79 93d44fb9d79a14cb63b46a57c072228e { 'aliquot_tag': 'ALQ_91931ac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-03639.RNA-Seq.transcriptome.T.hg38 C3L-03639 PDA RNA-Seq tumor CPT0238610015 ff3a39f3-1244-475c-a094-9580d9d75fe0.rna_seq.transcriptome.gdc_realn.bam 11345201832 BAM transcriptome harmonized CPTAC3 fe86ee18-dd0c-4afe-a178-162673b2097c d754194b927af8abb198dbfbc083ea84 { 'aliquot_tag': 'ALQ_91931ac', 'gdc_sample_type': 'Primary Tumor' } C3L-03639.Targeted.T C3L-03639 PDA Targeted Sequencing tumor CPT0238610012 CPT0238610012.CustomSelection.RP-1303.PDO-18786.bam 5120239206 BAM aligned CPTAC3 eabb6d66-77eb-4808-99f4-cf05f3b12734 0635bc8a0b8ce896c1bcfe72ac4226d5 { 'aliquot_tag': 'ALQ_977da40f', 'gdc_sample_type': 'Primary Tumor' } C3L-03639.Targeted.T.hg38 C3L-03639 PDA Targeted Sequencing tumor CPT0238610012 18a2e2df-4b2a-4444-8a37-134b95717eba_targetedsequencing_gdc_realn.bam 7026319712 BAM harmonized CPTAC3 4dab60b5-2699-4e99-9e9f-d5615cbb1e1e 6deba3421bc5e171611a409013984723 { 'aliquot_tag': 'ALQ_977da40f', 'gdc_sample_type': 'Primary Tumor' } @@ -13812,16 +14694,16 @@ C3L-03642.miRNA-Seq.A C3L-03642 LUAD miRNA-Seq tissue_normal CPT0216830009 19072 C3L-03642.miRNA-Seq.A.hg38 C3L-03642 LUAD miRNA-Seq tissue_normal CPT0216830009 9c530534-236d-4544-bc64-de7239afac87_mirnaseq_gdc_realn.bam 241718180 BAM harmonized CPTAC3 88fb3827-6ae0-44cd-ad7b-0d814c64b01c 5a027fa8687d543a8aa8bd34671a4e58 { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03642.miRNA-Seq.T C3L-03642 LUAD miRNA-Seq tumor CPT0216820009 190722_UNC31-K00269_0234_AH7VGTBBXY_GGCTAC_S7_L005_R1_001.unaln.bam 253320443 BAM unaligned CPTAC3 e15fee5d-131b-459a-bf1d-e71bca132837 878cb20e22bec548e86d6115dd8d92a4 { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor' } C3L-03642.miRNA-Seq.T.hg38 C3L-03642 LUAD miRNA-Seq tumor CPT0216820009 22d72ea6-dbe9-469a-8947-70ed5135854e_mirnaseq_gdc_realn.bam 275060230 BAM harmonized CPTAC3 d52644be-6e75-4422-9679-548cab39f617 abf58ea7feb7d87a773a60329f93150b { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor' } -C3L-03642.RNA-Seq.chimeric.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 49557fb9-cbc0-49b0-bbfb-fb9c2c3279e2.rna_seq.chimeric.gdc_realn.bam 27388806 BAM chimeric harmonized CPTAC3 1927396f-07e1-4526-a560-34cea00d9030 fb9e407a06ac85498a9011aefabb052b { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03642.RNA-Seq.chimeric.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 91ff0950-9855-4985-8ff5-fd879f1ffbee.rna_seq.chimeric.gdc_realn.bam 56320962 BAM chimeric harmonized CPTAC3 9c9ed718-d341-4cb7-9872-8070eb5885bc 6912415f5f07bf17c2480b62e1a6feb0 { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor' } -C3L-03642.RNA-Seq.genomic.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 49557fb9-cbc0-49b0-bbfb-fb9c2c3279e2.rna_seq.genomic.gdc_realn.bam 15860677969 BAM genomic harmonized CPTAC3 b83b2a35-29f1-4846-b5a3-40da36442bcb 05e60dc66baaaf471701146b86eec95a { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03642.RNA-Seq.genomic.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 91ff0950-9855-4985-8ff5-fd879f1ffbee.rna_seq.genomic.gdc_realn.bam 12610564602 BAM genomic harmonized CPTAC3 c884ad30-338b-4098-9aef-85403ef990c0 24252ef4666d5551339835c3d9f79c0c { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor' } -C3L-03642.RNA-Seq.R1_L001.A C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 190607_UNC32-K00270_0178_AH773TBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4642044745 FASTQ R1_L001 unaligned CPTAC3 56ddbe29-682c-4758-8a31-b0ee38465644 2d82b214a1ee85832238390ca84d10a5 { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03642.RNA-Seq.R1_L004.T C3L-03642 LUAD RNA-Seq tumor CPT0216820009 190607_UNC32-K00270_0179_BH75W2BBXY_TCTCTACT-CGCGGTTC_S13_L004_R1_001.fastq.gz 3991831524 FASTQ R1_L004 unaligned CPTAC3 1cde7d1e-d67c-4092-96d7-2690736c1919 7f082c97aeb00e212529de328560a970 { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor' } -C3L-03642.RNA-Seq.R2_L001.A C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 190607_UNC32-K00270_0178_AH773TBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 4919837227 FASTQ R2_L001 unaligned CPTAC3 9c736235-5c0e-4ee4-8f21-bf1969b5a99e 964004860f813ee9edad131068f95514 { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03642.RNA-Seq.R2_L004.T C3L-03642 LUAD RNA-Seq tumor CPT0216820009 190607_UNC32-K00270_0179_BH75W2BBXY_TCTCTACT-CGCGGTTC_S13_L004_R2_001.fastq.gz 4544229711 FASTQ R2_L004 unaligned CPTAC3 8df56ec4-7e8a-4e44-904a-c2e5bc9a3584 638b6514d1af8c4c3195d00b85a4d50a { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor' } -C3L-03642.RNA-Seq.transcriptome.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 49557fb9-cbc0-49b0-bbfb-fb9c2c3279e2.rna_seq.transcriptome.gdc_realn.bam 8727674193 BAM transcriptome harmonized CPTAC3 ca218e35-13ad-417d-bd4a-e4f261d91e4b 48bef6dd923e5446329466ea62682843 { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03642.RNA-Seq.transcriptome.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 91ff0950-9855-4985-8ff5-fd879f1ffbee.rna_seq.transcriptome.gdc_realn.bam 8554277455 BAM transcriptome harmonized CPTAC3 594eb3f9-96e9-4db4-9ac5-ada52d1db020 4796e317fbc8f14a909a61b8c41cd331 { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor' } +C3L-03642.RNA-Seq.chimeric.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 118d0584-1182-4897-ab07-8e7a6e68e5d7.rna_seq.chimeric.gdc_realn.bam 27377253 BAM chimeric harmonized CPTAC3 b139a9b2-c8b5-4188-a1c6-a1ee2063a83b 415ca164c850a8406dc2671b9f2efc4a { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03642.RNA-Seq.chimeric.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 2dd13559-4574-41cd-9f32-2be5f18ae8d4.rna_seq.chimeric.gdc_realn.bam 56304405 BAM chimeric harmonized CPTAC3 62f1ebe9-b4c0-454c-8c20-ac3af6a3ba6e 9e708b07705f01da873761b113e30da8 { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor' } +C3L-03642.RNA-Seq.genomic.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 118d0584-1182-4897-ab07-8e7a6e68e5d7.rna_seq.genomic.gdc_realn.bam 15862343901 BAM genomic harmonized CPTAC3 c304f603-4ff0-4d5f-89da-8ab80ef485ef fea0d2c61e37f091eb60847f1320da48 { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03642.RNA-Seq.genomic.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 2dd13559-4574-41cd-9f32-2be5f18ae8d4.rna_seq.genomic.gdc_realn.bam 12611642563 BAM genomic harmonized CPTAC3 c3882db6-cdff-4d48-a42f-1124b17ef153 32b6be0d12e602421e47dc8f5afa1d83 { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor' } +C3L-03642.RNA-Seq.R1_L001.A C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 190607_UNC32-K00270_0178_AH773TBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4642044745 FASTQ R1_L001 unaligned CPTAC3 56ddbe29-682c-4758-8a31-b0ee38465644 2d82b214a1ee85832238390ca84d10a5 { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-03642.RNA-Seq.R1_L004.T C3L-03642 LUAD RNA-Seq tumor CPT0216820009 190607_UNC32-K00270_0179_BH75W2BBXY_TCTCTACT-CGCGGTTC_S13_L004_R1_001.fastq.gz 3991831524 FASTQ R1_L004 unaligned CPTAC3 1cde7d1e-d67c-4092-96d7-2690736c1919 7f082c97aeb00e212529de328560a970 { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-03642.RNA-Seq.R2_L001.A C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 190607_UNC32-K00270_0178_AH773TBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 4919837227 FASTQ R2_L001 unaligned CPTAC3 9c736235-5c0e-4ee4-8f21-bf1969b5a99e 964004860f813ee9edad131068f95514 { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-03642.RNA-Seq.R2_L004.T C3L-03642 LUAD RNA-Seq tumor CPT0216820009 190607_UNC32-K00270_0179_BH75W2BBXY_TCTCTACT-CGCGGTTC_S13_L004_R2_001.fastq.gz 4544229711 FASTQ R2_L004 unaligned CPTAC3 8df56ec4-7e8a-4e44-904a-c2e5bc9a3584 638b6514d1af8c4c3195d00b85a4d50a { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-03642.RNA-Seq.transcriptome.A.hg38 C3L-03642 LUAD RNA-Seq tissue_normal CPT0216830009 118d0584-1182-4897-ab07-8e7a6e68e5d7.rna_seq.transcriptome.gdc_realn.bam 9700307783 BAM transcriptome harmonized CPTAC3 42da128b-91f5-4f46-b036-31412254ef33 095537dc565ae33284138ecd58a73048 { 'aliquot_tag': 'ALQ_4b6402f6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03642.RNA-Seq.transcriptome.T.hg38 C3L-03642 LUAD RNA-Seq tumor CPT0216820009 2dd13559-4574-41cd-9f32-2be5f18ae8d4.rna_seq.transcriptome.gdc_realn.bam 9572301271 BAM transcriptome harmonized CPTAC3 e15a53a2-3bd0-42af-ad83-c9d4c62de216 73e9ff1f34aeeafbe52800cc084faf95 { 'aliquot_tag': 'ALQ_76042b46', 'gdc_sample_type': 'Primary Tumor' } C3L-03642.WGS.N C3L-03642 LUAD WGS blood_normal CPT0217680002 CPT0217680002.WholeGenome.RP-1303.bam 69402234421 BAM aligned CPTAC3 c81f46ca-0bec-46b9-b5d7-5d2a59966819 cb976f26df8d7f24fe3cbb60cbc2584e { 'aliquot_tag': 'ALQ_371b80ab', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03642.WGS.N.hg38 C3L-03642 LUAD WGS blood_normal CPT0217680002 92c97b23-8846-4d06-b2b2-670f5bb378b7_wgs_gdc_realn.bam 101404143412 BAM harmonized CPTAC3 354b9f63-8a25-4d68-ac09-fd19d420622d 3c566e15784445d754e87818200d6fd6 { 'aliquot_tag': 'ALQ_371b80ab', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03642.WGS.T C3L-03642 LUAD WGS tumor CPT0216820006 CPT0216820006.WholeGenome.RP-1303.bam 82848999991 BAM aligned CPTAC3 1f5957a3-87d1-4f52-8eb3-6ece5c1e7771 2ab221535501bc0a85a64e695495db87 { 'aliquot_tag': 'ALQ_e6bb36d7', 'gdc_sample_type': 'Primary Tumor' } @@ -13838,8 +14720,8 @@ C3L-03678.miRNA-Seq.T C3L-03678 LSCC miRNA-Seq tumor CPT0190550009 181219_UNC31- C3L-03678.miRNA-Seq.T.hg38 C3L-03678 LSCC miRNA-Seq tumor CPT0190550009 e8b547fc-fdea-45f5-9396-ad4fc3d07f91_mirnaseq_gdc_realn.bam 253330764 BAM harmonized CPTAC3 18b0a311-e11e-4685-a264-ba0c40b62743 da21a2f3a96021c7b1e627e9356bbd0b { 'aliquot_tag': 'ALQ_f102f6c2', 'gdc_sample_type': 'Primary Tumor' } C3L-03678.RNA-Seq.chimeric.T.hg38 C3L-03678 LSCC RNA-Seq tumor CPT0190550009 87bf2a08-7e13-451d-94e8-55f8ddbc4b58.rna_seq.chimeric.gdc_realn.bam 217081201 BAM chimeric harmonized CPTAC3 d9cba597-bd33-444a-9e7e-c8f7eab992f5 cf24e281f2d4ed653d035aa9ed80e008 { 'aliquot_tag': 'ALQ_f102f6c2', 'gdc_sample_type': 'Primary Tumor' } C3L-03678.RNA-Seq.genomic.T.hg38 C3L-03678 LSCC RNA-Seq tumor CPT0190550009 87bf2a08-7e13-451d-94e8-55f8ddbc4b58.rna_seq.genomic.gdc_realn.bam 7756956740 BAM genomic harmonized CPTAC3 edfcf470-b66f-4de2-8518-4420df899547 3d0ee9a4e6c64e59303809be68bc1b9f { 'aliquot_tag': 'ALQ_f102f6c2', 'gdc_sample_type': 'Primary Tumor' } -C3L-03678.RNA-Seq.R1_L003.T C3L-03678 LSCC RNA-Seq tumor CPT0190550009 181207_UNC32-K00270_0136_AH2N7LBBXY_AGTTCC_S11_L003_R1_001.fastq.gz 3357518606 FASTQ R1_L003 unaligned CPTAC3 2fdcf9b2-da83-4070-b39d-87e70b928eb6 a9abde223c0891efefd004cc0120ff38 { 'aliquot_tag': 'ALQ_f102f6c2', 'gdc_sample_type': 'Primary Tumor' } -C3L-03678.RNA-Seq.R2_L003.T C3L-03678 LSCC RNA-Seq tumor CPT0190550009 181207_UNC32-K00270_0136_AH2N7LBBXY_AGTTCC_S11_L003_R2_001.fastq.gz 3529872598 FASTQ R2_L003 unaligned CPTAC3 b44c7e5e-1df2-4a2b-8ef1-eb051e40af8e 8da475c9a79ed55f13cf33f3f1dd2238 { 'aliquot_tag': 'ALQ_f102f6c2', 'gdc_sample_type': 'Primary Tumor' } +C3L-03678.RNA-Seq.R1_L003.T C3L-03678 LSCC RNA-Seq tumor CPT0190550009 181207_UNC32-K00270_0136_AH2N7LBBXY_AGTTCC_S11_L003_R1_001.fastq.gz 3357518606 FASTQ R1_L003 unaligned CPTAC3 2fdcf9b2-da83-4070-b39d-87e70b928eb6 a9abde223c0891efefd004cc0120ff38 { 'aliquot_tag': 'ALQ_f102f6c2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-03678.RNA-Seq.R2_L003.T C3L-03678 LSCC RNA-Seq tumor CPT0190550009 181207_UNC32-K00270_0136_AH2N7LBBXY_AGTTCC_S11_L003_R2_001.fastq.gz 3529872598 FASTQ R2_L003 unaligned CPTAC3 b44c7e5e-1df2-4a2b-8ef1-eb051e40af8e 8da475c9a79ed55f13cf33f3f1dd2238 { 'aliquot_tag': 'ALQ_f102f6c2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-03678.RNA-Seq.transcriptome.T.hg38 C3L-03678 LSCC RNA-Seq tumor CPT0190550009 87bf2a08-7e13-451d-94e8-55f8ddbc4b58.rna_seq.transcriptome.gdc_realn.bam 8613835147 BAM transcriptome harmonized CPTAC3 5f74a724-23e8-46c1-a3c9-3a7ddc511e2b 71ebc25f8b7fdad5ae4726f3d407ca4b { 'aliquot_tag': 'ALQ_f102f6c2', 'gdc_sample_type': 'Primary Tumor' } C3L-03678.WGS.N C3L-03678 LSCC WGS blood_normal CPT0191230002 CPT0191230002.WholeGenome.RP-1303.bam 67092742984 BAM aligned CPTAC3 dc04e96c-2966-4ab0-b529-fb595243293e fe1d0e569656a019046fa804e7c0fc56 { 'aliquot_tag': 'ALQ_52e2e1e6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03678.WGS.N.hg38 C3L-03678 LSCC WGS blood_normal CPT0191230002 0acf70c7-0014-4247-b7e3-674203be4121_wgs_gdc_realn.bam 95620288289 BAM harmonized CPTAC3 4ed1b874-7344-4479-b1ea-77d7dec97040 36b02c9f33cc9bc8778def97251290f2 { 'aliquot_tag': 'ALQ_52e2e1e6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13857,16 +14739,16 @@ C3L-03679.miRNA-Seq.A C3L-03679 LUAD miRNA-Seq tissue_normal CPT0189960009 19071 C3L-03679.miRNA-Seq.A.hg38 C3L-03679 LUAD miRNA-Seq tissue_normal CPT0189960009 8f77351a-6e8d-4c06-affd-d35affccdc28_mirnaseq_gdc_realn.bam 309884801 BAM harmonized CPTAC3 a0f286d3-d01a-4db1-b4d4-f4a9ef722099 5171b779ae5f9f9079adc98108aad381 { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03679.miRNA-Seq.T C3L-03679 LUAD miRNA-Seq tumor CPT0189950009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTAGAG_S13_L005_R1_001.unaln.bam 214376449 BAM unaligned CPTAC3 3e07dc52-9ded-4b62-8186-4095f74c7866 1ea0086b3ec023f6b8faf9001673bbd9 { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor' } C3L-03679.miRNA-Seq.T.hg38 C3L-03679 LUAD miRNA-Seq tumor CPT0189950009 156bde3e-e33d-485b-9c69-df013ac52b8e_mirnaseq_gdc_realn.bam 240909199 BAM harmonized CPTAC3 d31047d1-0d36-4a08-8962-815a651e843f 0b32b912a8bf74a26aac68fbd10b4c30 { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03679.RNA-Seq.chimeric.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 ef9c6276-4ff2-46c1-9dc1-ea0b13960190.rna_seq.chimeric.gdc_realn.bam 45197807 BAM chimeric harmonized CPTAC3 6ab75f59-8e7f-427e-bae4-6c3ab7b06bfa 49b77a44fdf2c3320c0e718222594fae { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03679.RNA-Seq.chimeric.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 2dc3bdc0-5c45-4596-b6d1-e63b33fb1eb8.rna_seq.chimeric.gdc_realn.bam 27408161 BAM chimeric harmonized CPTAC3 52b6bec6-2a35-4dfb-a0af-3cc43268168e dd4852951478863dd2c0c5d986c33be0 { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03679.RNA-Seq.genomic.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 ef9c6276-4ff2-46c1-9dc1-ea0b13960190.rna_seq.genomic.gdc_realn.bam 11180562347 BAM genomic harmonized CPTAC3 efe8ca28-7c85-4fad-94d8-0b4693d45208 053ff5a5f50a68ad90d1aa10ff9331ca { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03679.RNA-Seq.genomic.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 2dc3bdc0-5c45-4596-b6d1-e63b33fb1eb8.rna_seq.genomic.gdc_realn.bam 12223951242 BAM genomic harmonized CPTAC3 78f107ba-8e08-4c2c-b4ca-d228601278bb 8cc186c94891ac9b6edc22e9ee47738e { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03679.RNA-Seq.R1_L002.T C3L-03679 LUAD RNA-Seq tumor CPT0189950009 190607_UNC32-K00270_0179_BH75W2BBXY_TAATACAG-ATATTCAC_S5_L002_R1_001.fastq.gz 3747373205 FASTQ R1_L002 unaligned CPTAC3 e2a66652-aa64-4bfa-9f7b-3aad99ef5534 12c39f75b656ddcaaf917427ce2b120d { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03679.RNA-Seq.R1_L006.A C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCTTGTCA-GAACATAC_S20_L006_R1_001.fastq.gz 3912453454 FASTQ R1_L006 unaligned CPTAC3 24dd0a52-de16-443b-b235-a66edc995dd9 98833c65c96efbecdbaa008fba68fd74 { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03679.RNA-Seq.R2_L002.T C3L-03679 LUAD RNA-Seq tumor CPT0189950009 190607_UNC32-K00270_0179_BH75W2BBXY_TAATACAG-ATATTCAC_S5_L002_R2_001.fastq.gz 4178458008 FASTQ R2_L002 unaligned CPTAC3 298c28c1-65c7-435c-9788-5053083e8084 e63748fa4fba2c9b8797b70afc331cdd { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03679.RNA-Seq.R2_L006.A C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCTTGTCA-GAACATAC_S20_L006_R2_001.fastq.gz 4119306888 FASTQ R2_L006 unaligned CPTAC3 309593c7-ba2a-4bb7-8152-946cf6211b80 7fe587a75fcfc44a992f1ac03fadcb05 { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03679.RNA-Seq.transcriptome.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 ef9c6276-4ff2-46c1-9dc1-ea0b13960190.rna_seq.transcriptome.gdc_realn.bam 7398795407 BAM transcriptome harmonized CPTAC3 15245172-f937-4c71-bd31-d46378de62c2 fe4f743df2a5d497478497e33f43697a { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03679.RNA-Seq.transcriptome.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 2dc3bdc0-5c45-4596-b6d1-e63b33fb1eb8.rna_seq.transcriptome.gdc_realn.bam 7713938878 BAM transcriptome harmonized CPTAC3 69ea423e-dcd5-4972-af83-f1744ad3f129 497ce40135eb950f4b246feafa85d447 { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-03679.RNA-Seq.chimeric.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 a230959c-09c1-40fb-b0d8-e95fb6b0916d.rna_seq.chimeric.gdc_realn.bam 45173822 BAM chimeric harmonized CPTAC3 207efe2b-45da-4355-9bf3-a0afe75f567b 485079b9125140d62bf25b2ad1044f58 { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03679.RNA-Seq.chimeric.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 c39d2005-1dda-47e3-8e92-6c152d492583.rna_seq.chimeric.gdc_realn.bam 27400580 BAM chimeric harmonized CPTAC3 07de0de5-b7d9-4ffc-8536-594694b76634 e620c47a31bc7f1bcf2007964942eaf0 { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-03679.RNA-Seq.genomic.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 a230959c-09c1-40fb-b0d8-e95fb6b0916d.rna_seq.genomic.gdc_realn.bam 11181894851 BAM genomic harmonized CPTAC3 29486dd0-2ed8-4bae-8551-dd6c21ca2f0d c5970caf0adb280d8348584e3e421af2 { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03679.RNA-Seq.genomic.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 c39d2005-1dda-47e3-8e92-6c152d492583.rna_seq.genomic.gdc_realn.bam 12234201424 BAM genomic harmonized CPTAC3 f9061089-53cc-42c6-9de3-53972b5a7fae d3a9a18e69c8f25a2fae0d90023dd91e { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor' } +C3L-03679.RNA-Seq.R1_L002.T C3L-03679 LUAD RNA-Seq tumor CPT0189950009 190607_UNC32-K00270_0179_BH75W2BBXY_TAATACAG-ATATTCAC_S5_L002_R1_001.fastq.gz 3747373205 FASTQ R1_L002 unaligned CPTAC3 e2a66652-aa64-4bfa-9f7b-3aad99ef5534 12c39f75b656ddcaaf917427ce2b120d { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-03679.RNA-Seq.R1_L006.A C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCTTGTCA-GAACATAC_S20_L006_R1_001.fastq.gz 3912453454 FASTQ R1_L006 unaligned CPTAC3 24dd0a52-de16-443b-b235-a66edc995dd9 98833c65c96efbecdbaa008fba68fd74 { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-03679.RNA-Seq.R2_L002.T C3L-03679 LUAD RNA-Seq tumor CPT0189950009 190607_UNC32-K00270_0179_BH75W2BBXY_TAATACAG-ATATTCAC_S5_L002_R2_001.fastq.gz 4178458008 FASTQ R2_L002 unaligned CPTAC3 298c28c1-65c7-435c-9788-5053083e8084 e63748fa4fba2c9b8797b70afc331cdd { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-03679.RNA-Seq.R2_L006.A C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCTTGTCA-GAACATAC_S20_L006_R2_001.fastq.gz 4119306888 FASTQ R2_L006 unaligned CPTAC3 309593c7-ba2a-4bb7-8152-946cf6211b80 7fe587a75fcfc44a992f1ac03fadcb05 { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-03679.RNA-Seq.transcriptome.A.hg38 C3L-03679 LUAD RNA-Seq tissue_normal CPT0189960009 a230959c-09c1-40fb-b0d8-e95fb6b0916d.rna_seq.transcriptome.gdc_realn.bam 8343357055 BAM transcriptome harmonized CPTAC3 9641af35-24fc-4f50-8a35-f3e87f34089f 9f04f59395985b2c1a7366373a182a6b { 'aliquot_tag': 'ALQ_98520924', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03679.RNA-Seq.transcriptome.T.hg38 C3L-03679 LUAD RNA-Seq tumor CPT0189950009 c39d2005-1dda-47e3-8e92-6c152d492583.rna_seq.transcriptome.gdc_realn.bam 8674749414 BAM transcriptome harmonized CPTAC3 9dceda4c-e3bb-46d9-8339-1628faa9fb49 3d36915749c725437cfa980a5ad8e06d { 'aliquot_tag': 'ALQ_dff273f4', 'gdc_sample_type': 'Primary Tumor' } C3L-03679.WGS.N C3L-03679 LUAD WGS blood_normal CPT0191100002 CPT0191100002.WholeGenome.RP-1303.bam 71414866252 BAM aligned CPTAC3 ad535a9e-0ad7-47e2-9118-e1f56c3c9b77 f93e8a09fa890e5c2269ecb5629c8738 { 'aliquot_tag': 'ALQ_93d6e998', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03679.WGS.N.hg38 C3L-03679 LUAD WGS blood_normal CPT0191100002 e8f894ad-e0c8-4dd8-b72e-1336b3e1ef3b_wgs_gdc_realn.bam 103667715600 BAM harmonized CPTAC3 92c6aeed-036c-44a9-99bd-52b38f97da15 fef197cd164b8a84dd2e4486e4935ffa { 'aliquot_tag': 'ALQ_93d6e998', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03679.WGS.T C3L-03679 LUAD WGS tumor CPT0189950006 CPT0189950006.WholeGenome.RP-1303.bam 60956376125 BAM aligned CPTAC3 64a977be-dfae-4f12-b664-b96cceef3201 f21fdc7d0738da516212a621776763d5 { 'aliquot_tag': 'ALQ_4f4d6e65', 'gdc_sample_type': 'Primary Tumor' } @@ -13882,9 +14764,9 @@ C3L-03681.MethArray.Red.T C3L-03681 GBM Methylation Array tumor CPT0221180005 20 C3L-03681.miRNA-Seq.T C3L-03681 GBM miRNA-Seq tumor CPT0221180009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACTCA_S32_L008_R1_001.unaln.bam 153422312 BAM unaligned CPTAC3 e362d28e-75eb-48cc-8e47-16e75f3793a4 f25bf4d77b5797bd3cc312d58a96a04b { 'aliquot_tag': 'ALQ_50935b42', 'gdc_sample_type': 'Primary Tumor' } C3L-03681.miRNA-Seq.T.hg38 C3L-03681 GBM miRNA-Seq tumor CPT0221180009 49f12657-2d1f-4314-995d-9bc42c8709cd_mirnaseq_gdc_realn.bam 174822611 BAM harmonized CPTAC3 44b2ce58-8a2e-4cd0-a71f-c6092a9864c2 f6c62664f53a560a53dd9f2868c3f815 { 'aliquot_tag': 'ALQ_50935b42', 'gdc_sample_type': 'Primary Tumor' } C3L-03681.RNA-Seq.chimeric.T.hg38 C3L-03681 GBM RNA-Seq tumor CPT0221180009 9b4b6b42-09e1-4783-b374-532b9df2e207.rna_seq.chimeric.gdc_realn.bam 36219612 BAM chimeric harmonized CPTAC3 041c5ad0-2f26-4f5a-83e6-ba64c9ae2529 344d3ad3bde878d5daf1dea75a80652b { 'aliquot_tag': 'ALQ_50935b42', 'gdc_sample_type': 'Primary Tumor' } -C3L-03681.RNA-Seq.genomic.T.hg38 C3L-03681 GBM RNA-Seq tumor CPT0221180009 9b4b6b42-09e1-4783-b374-532b9df2e207.rna_seq.genomic.gdc_realn.bam 9434379641 BAM genomic harmonized CPTAC3 5f592894-a0cd-4bb6-a793-97d3a6b15fb8 8450ba3314889354ea6c380d3a588b98 { 'aliquot_tag': 'ALQ_50935b42', 'gdc_sample_type': 'Primary Tumor' } -C3L-03681.RNA-Seq.R1_L008.T C3L-03681 GBM RNA-Seq tumor CPT0221180009 180918_UNC31-K00269_0153_BHWNFCBBXX_ACTGAT_S31_L008_R1_001.fastq.gz 4328253999 FASTQ R1_L008 unaligned CPTAC3 2962ecc7-2fe8-4e9e-89d3-b617340d0432 8ef39799b7b277441cbe7503c4dccec9 { 'aliquot_tag': 'ALQ_50935b42', 'gdc_sample_type': 'Primary Tumor' } -C3L-03681.RNA-Seq.R2_L008.T C3L-03681 GBM RNA-Seq tumor CPT0221180009 180918_UNC31-K00269_0153_BHWNFCBBXX_ACTGAT_S31_L008_R2_001.fastq.gz 4631403009 FASTQ R2_L008 unaligned CPTAC3 9bb1f2aa-64c9-4c92-b826-ee22bb21f2a0 d471d4619e40eb1f6711d8c9c8831310 { 'aliquot_tag': 'ALQ_50935b42', 'gdc_sample_type': 'Primary Tumor' } +C3L-03681.RNA-Seq.genomic.T.hg38 C3L-03681 GBM RNA-Seq tumor CPT0221180009 9b4b6b42-09e1-4783-b374-532b9df2e207.rna_seq.genomic.gdc_realn.bam 9434379641 BAM genomic harmonized CPTAC3 3393929d-6c16-41fe-a717-f8b06a576b1f 8450ba3314889354ea6c380d3a588b98 { 'aliquot_tag': 'ALQ_50935b42', 'gdc_sample_type': 'Primary Tumor' } +C3L-03681.RNA-Seq.R1_L008.T C3L-03681 GBM RNA-Seq tumor CPT0221180009 180918_UNC31-K00269_0153_BHWNFCBBXX_ACTGAT_S31_L008_R1_001.fastq.gz 4328253999 FASTQ R1_L008 unaligned CPTAC3 2962ecc7-2fe8-4e9e-89d3-b617340d0432 8ef39799b7b277441cbe7503c4dccec9 { 'aliquot_tag': 'ALQ_50935b42', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-03681.RNA-Seq.R2_L008.T C3L-03681 GBM RNA-Seq tumor CPT0221180009 180918_UNC31-K00269_0153_BHWNFCBBXX_ACTGAT_S31_L008_R2_001.fastq.gz 4631403009 FASTQ R2_L008 unaligned CPTAC3 9bb1f2aa-64c9-4c92-b826-ee22bb21f2a0 d471d4619e40eb1f6711d8c9c8831310 { 'aliquot_tag': 'ALQ_50935b42', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-03681.RNA-Seq.transcriptome.T.hg38 C3L-03681 GBM RNA-Seq tumor CPT0221180009 9b4b6b42-09e1-4783-b374-532b9df2e207.rna_seq.transcriptome.gdc_realn.bam 12135280133 BAM transcriptome harmonized CPTAC3 0529914f-888b-4dac-9b8a-02bb32fdd6b8 65890b93eb705d53faaab93bb1af33a8 { 'aliquot_tag': 'ALQ_50935b42', 'gdc_sample_type': 'Primary Tumor' } C3L-03681.WGS.N C3L-03681 GBM WGS blood_normal CPT0220510002 CPT0220510002.WholeGenome.RP-1303.bam 60596705995 BAM aligned CPTAC3 08f9bd71-2fa5-41b2-88c2-5014a14fb0f9 82a919f2e2a0b44cd77ec2f202121dc6 { 'aliquot_tag': 'ALQ_f7b7a919', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03681.WGS.N.hg38 C3L-03681 GBM WGS blood_normal CPT0220510002 62fc896c-d0c5-4885-b546-4b024f96b1e7_wgs_gdc_realn.bam 87428465300 BAM harmonized CPTAC3 7f3b8669-1552-4554-8f61-7471a0ba9abc 00bfd37919fd9eaf2bf8c2915679b633 { 'aliquot_tag': 'ALQ_f7b7a919', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13900,16 +14782,16 @@ C3L-03717.miRNA-Seq.A C3L-03717 LUAD miRNA-Seq tissue_normal CPT0234750006 19071 C3L-03717.miRNA-Seq.A.hg38 C3L-03717 LUAD miRNA-Seq tissue_normal CPT0234750006 bfa36740-351a-483f-a47e-c44d04933ae6_mirnaseq_gdc_realn.bam 227561904 BAM harmonized CPTAC3 fcbf6387-1ae8-4178-b4e3-d6a7150223d3 a424e63bf85679cb80002575417295d6 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03717.miRNA-Seq.T C3L-03717 LUAD miRNA-Seq tumor CPT0234740009 190828_UNC32-K00270_0200_BH7GVJBBXY_CACCGG_S151_L007_R1_001.unaln.bam 222359039 BAM unaligned CPTAC3 807a2b85-afe9-46b6-9071-8e57bca27cfe 5a17481d1038440c2c5214a1bbc3c7cf { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor' } C3L-03717.miRNA-Seq.T.hg38 C3L-03717 LUAD miRNA-Seq tumor CPT0234740009 0e0c5bef-a926-410f-afc2-bc09e4fce6bd_mirnaseq_gdc_realn.bam 247676747 BAM harmonized CPTAC3 d3ba4e47-3cf8-4bc6-a7cb-6c7408241293 e1b2d86452a3fd47d89f130a8f04ccf6 { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor' } -C3L-03717.RNA-Seq.chimeric.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 6c2a8c28-76ec-4ba9-9183-8b3af659528c.rna_seq.chimeric.gdc_realn.bam 40520846 BAM chimeric harmonized CPTAC3 81be84fc-265e-4dba-97e9-a188c10c8f8b f7501001d669c6982cfc16f53d80e789 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03717.RNA-Seq.chimeric.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 8b87e493-723c-4d8d-aff0-06518f83d589.rna_seq.chimeric.gdc_realn.bam 46678731 BAM chimeric harmonized CPTAC3 96a2a458-448d-4065-8fdd-1d2e07ff8453 ba2b1baa632f79f836d70d58d378bcea { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor' } -C3L-03717.RNA-Seq.genomic.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 6c2a8c28-76ec-4ba9-9183-8b3af659528c.rna_seq.genomic.gdc_realn.bam 9508137484 BAM genomic harmonized CPTAC3 02da82bb-6c21-4a3d-9f0b-2be9dc6e3307 7f5c313523123b6610c01674b869e880 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03717.RNA-Seq.genomic.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 8b87e493-723c-4d8d-aff0-06518f83d589.rna_seq.genomic.gdc_realn.bam 12095972135 BAM genomic harmonized CPTAC3 59438a60-75f9-460e-b931-4d6435108252 adc11023d592564db9b1ab9e19f83a6e { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor' } -C3L-03717.RNA-Seq.R1_L006.A C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 190614_UNC32-K00270_0182_BH7777BBXY_GGCATTCT-CTAGCTTG_S24_L006_R1_001.fastq.gz 4011200395 FASTQ R1_L006 unaligned CPTAC3 65e9b9a7-b693-46c7-8ba1-3f71ca129fb5 5d663364f1bc171057088835e1cd9082 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03717.RNA-Seq.R1_L006.T C3L-03717 LUAD RNA-Seq tumor CPT0234740009 190614_UNC32-K00270_0182_BH7777BBXY_TTACAGGA-TGACAAGC_S21_L006_R1_001.fastq.gz 4558899664 FASTQ R1_L006 unaligned CPTAC3 b09d3d82-e1d8-41d5-8a0d-803946d44c18 9e5886f9909876a30c67ca206a2c7cd5 { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor' } -C3L-03717.RNA-Seq.R2_L006.A C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 190614_UNC32-K00270_0182_BH7777BBXY_GGCATTCT-CTAGCTTG_S24_L006_R2_001.fastq.gz 4121879476 FASTQ R2_L006 unaligned CPTAC3 5b1346f1-9e3f-4f66-b4fc-5febd7a88009 65ed4dcb92f1f7c6f846efb3c0bea463 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03717.RNA-Seq.R2_L006.T C3L-03717 LUAD RNA-Seq tumor CPT0234740009 190614_UNC32-K00270_0182_BH7777BBXY_TTACAGGA-TGACAAGC_S21_L006_R2_001.fastq.gz 4907137139 FASTQ R2_L006 unaligned CPTAC3 569db2ac-ba53-42a2-9902-f80c82fddf1d f715496ec2aa4e4690714f3c950722a0 { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor' } -C3L-03717.RNA-Seq.transcriptome.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 6c2a8c28-76ec-4ba9-9183-8b3af659528c.rna_seq.transcriptome.gdc_realn.bam 6948261509 BAM transcriptome harmonized CPTAC3 00398783-c6b0-4176-94ac-adfa5e942fd1 11b90469213c8c49423d793507655204 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03717.RNA-Seq.transcriptome.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 8b87e493-723c-4d8d-aff0-06518f83d589.rna_seq.transcriptome.gdc_realn.bam 9220964105 BAM transcriptome harmonized CPTAC3 546075c8-4c53-4646-bc5b-4d081b508d56 efedcaf50d0f567c4c4055a9573388f7 { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor' } +C3L-03717.RNA-Seq.chimeric.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 1dafe3e7-5548-47a9-b0ac-a11f26cf52ba.rna_seq.chimeric.gdc_realn.bam 40498546 BAM chimeric harmonized CPTAC3 1b60da2d-a9a3-4b37-a1ac-2d435c88fbad f4695cb8bae70a3a9cc02c69893aea65 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03717.RNA-Seq.chimeric.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 45bd70cc-b601-4a15-b3ec-a99b6854664e.rna_seq.chimeric.gdc_realn.bam 46691961 BAM chimeric harmonized CPTAC3 e21e4f14-3718-4480-a6b3-94f6f49bf582 f27418f38de2ff4d243947ffd9ba9469 { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor' } +C3L-03717.RNA-Seq.genomic.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 1dafe3e7-5548-47a9-b0ac-a11f26cf52ba.rna_seq.genomic.gdc_realn.bam 9508999063 BAM genomic harmonized CPTAC3 535ac5cd-f7c2-4c5a-b1ac-0b6786948f64 61f0684b1cedc8c50c543c1d4af96d51 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03717.RNA-Seq.genomic.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 45bd70cc-b601-4a15-b3ec-a99b6854664e.rna_seq.genomic.gdc_realn.bam 12097666934 BAM genomic harmonized CPTAC3 55d51372-a0cb-4829-b4ef-ca341fea5f1a 5ba2d265f3417338fc14e683c1c7246c { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor' } +C3L-03717.RNA-Seq.R1_L006.A C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 190614_UNC32-K00270_0182_BH7777BBXY_GGCATTCT-CTAGCTTG_S24_L006_R1_001.fastq.gz 4011200395 FASTQ R1_L006 unaligned CPTAC3 65e9b9a7-b693-46c7-8ba1-3f71ca129fb5 5d663364f1bc171057088835e1cd9082 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-03717.RNA-Seq.R1_L006.T C3L-03717 LUAD RNA-Seq tumor CPT0234740009 190614_UNC32-K00270_0182_BH7777BBXY_TTACAGGA-TGACAAGC_S21_L006_R1_001.fastq.gz 4558899664 FASTQ R1_L006 unaligned CPTAC3 b09d3d82-e1d8-41d5-8a0d-803946d44c18 9e5886f9909876a30c67ca206a2c7cd5 { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03717.RNA-Seq.R2_L006.A C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 190614_UNC32-K00270_0182_BH7777BBXY_GGCATTCT-CTAGCTTG_S24_L006_R2_001.fastq.gz 4121879476 FASTQ R2_L006 unaligned CPTAC3 5b1346f1-9e3f-4f66-b4fc-5febd7a88009 65ed4dcb92f1f7c6f846efb3c0bea463 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-03717.RNA-Seq.R2_L006.T C3L-03717 LUAD RNA-Seq tumor CPT0234740009 190614_UNC32-K00270_0182_BH7777BBXY_TTACAGGA-TGACAAGC_S21_L006_R2_001.fastq.gz 4907137139 FASTQ R2_L006 unaligned CPTAC3 569db2ac-ba53-42a2-9902-f80c82fddf1d f715496ec2aa4e4690714f3c950722a0 { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-03717.RNA-Seq.transcriptome.A.hg38 C3L-03717 LUAD RNA-Seq tissue_normal CPT0234750006 1dafe3e7-5548-47a9-b0ac-a11f26cf52ba.rna_seq.transcriptome.gdc_realn.bam 7823869315 BAM transcriptome harmonized CPTAC3 acbd8d5a-36e5-424d-bc8a-45694f001f69 9ba5175759bb6a99ee4b9423b1556f14 { 'aliquot_tag': 'ALQ_70774e46', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03717.RNA-Seq.transcriptome.T.hg38 C3L-03717 LUAD RNA-Seq tumor CPT0234740009 45bd70cc-b601-4a15-b3ec-a99b6854664e.rna_seq.transcriptome.gdc_realn.bam 10253833436 BAM transcriptome harmonized CPTAC3 a3ad906b-495d-4178-8012-9426c5b1539f 8491a6465b856181a374dedb3e77c79e { 'aliquot_tag': 'ALQ_dda87a67', 'gdc_sample_type': 'Primary Tumor' } C3L-03717.WGS.N C3L-03717 LUAD WGS blood_normal CPT0235690002 CPT0235690002.WholeGenome.RP-1303.bam 73774164554 BAM aligned CPTAC3 db60d572-1db1-448f-8225-bb9b4c19c80e 3a83f4e821f299349956a3f7361f0130 { 'aliquot_tag': 'ALQ_dfc1bf4f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03717.WGS.N.hg38 C3L-03717 LUAD WGS blood_normal CPT0235690002 08bcc004-30bd-4be8-b277-ac5bb83e4f79_wgs_gdc_realn.bam 107806932916 BAM harmonized CPTAC3 4e6a6c06-5fbb-487a-b575-7ce4912d73cc a4338be02fffe63766511bcaa49b8fb7 { 'aliquot_tag': 'ALQ_dfc1bf4f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03717.WGS.T C3L-03717 LUAD WGS tumor CPT0234740006 CPT0234740006.WholeGenome.RP-1303.bam 63967175863 BAM aligned CPTAC3 4ace2d37-2469-4a84-8bec-ae151accd9af 7b539ff70835709d9fd2470acb017b89 { 'aliquot_tag': 'ALQ_4d1767f6', 'gdc_sample_type': 'Primary Tumor' } @@ -13924,16 +14806,16 @@ C3L-03721.miRNA-Seq.A C3L-03721 LUAD miRNA-Seq tissue_normal CPT0234710006 19071 C3L-03721.miRNA-Seq.A.hg38 C3L-03721 LUAD miRNA-Seq tissue_normal CPT0234710006 13343134-1598-4484-a00d-c0cea64b5155_mirnaseq_gdc_realn.bam 284110343 BAM harmonized CPTAC3 1241f439-348f-4c90-82f2-4f173e77c6cc 0d4f579aee47c0db69cc67242601526a { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03721.miRNA-Seq.T C3L-03721 LUAD miRNA-Seq tumor CPT0234700009 190712_UNC32-K00270_0192_BH7HL3BBXY_CAAAAG_S4_L006_R1_001.unaln.bam 155487417 BAM unaligned CPTAC3 f5ab7bd5-d1cc-4326-a51b-b204d3d2de9c 696bc43531d488ac468bb6d904772f0f { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor' } C3L-03721.miRNA-Seq.T.hg38 C3L-03721 LUAD miRNA-Seq tumor CPT0234700009 087e32c7-c64a-47cf-a410-d222959c35fd_mirnaseq_gdc_realn.bam 169418204 BAM harmonized CPTAC3 555154f3-38c0-43c7-b989-f5994923d16b dcb4320348a8f27542ecb75bce5cd961 { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor' } -C3L-03721.RNA-Seq.chimeric.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 a37156bb-f282-4b17-aac4-88b855a3d5fc.rna_seq.chimeric.gdc_realn.bam 158663090 BAM chimeric harmonized CPTAC3 f9e3021e-5029-45e7-959d-12b2b537c047 0c63d04c3d33df15424aef12bf5b0154 { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03721.RNA-Seq.chimeric.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 2fc7dc3d-9e17-4e28-9b3c-b69c601f3dab.rna_seq.chimeric.gdc_realn.bam 44169485 BAM chimeric harmonized CPTAC3 5f0c8564-ad5a-46ea-8a8f-35fca9baa589 5e86f925f40485641ee8352ffb439c9e { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor' } -C3L-03721.RNA-Seq.genomic.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 a37156bb-f282-4b17-aac4-88b855a3d5fc.rna_seq.genomic.gdc_realn.bam 9550169733 BAM genomic harmonized CPTAC3 c58110dc-e670-4480-8981-d2006a4ca6de 20fc2c8f26beaf2db64761d4758985d6 { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03721.RNA-Seq.genomic.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 2fc7dc3d-9e17-4e28-9b3c-b69c601f3dab.rna_seq.genomic.gdc_realn.bam 10901912899 BAM genomic harmonized CPTAC3 99d6bec1-1344-4643-af3b-f289a20cc0ea 500a1869b0fc262d7e9a026e1d102e39 { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor' } -C3L-03721.RNA-Seq.R1_L006.A C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 190614_UNC32-K00270_0182_BH7777BBXY_CCGTGAAG-CAGTGGAT_S22_L006_R1_001.fastq.gz 3896456947 FASTQ R1_L006 unaligned CPTAC3 fe53295e-126a-4062-952c-c3e4214108ba 8596ad1327aba58834fbae67d22e6e89 { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03721.RNA-Seq.R1_L006.T C3L-03721 LUAD RNA-Seq tumor CPT0234700009 190614_UNC32-K00270_0182_BH7777BBXY_TCCAACGC-TTGGACTT_S23_L006_R1_001.fastq.gz 4501554460 FASTQ R1_L006 unaligned CPTAC3 bdf57d83-d1be-45e2-ae74-6981c82ad434 34a227a6c776bf96dc1eff4726da933d { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor' } -C3L-03721.RNA-Seq.R2_L006.A C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 190614_UNC32-K00270_0182_BH7777BBXY_CCGTGAAG-CAGTGGAT_S22_L006_R2_001.fastq.gz 4192643077 FASTQ R2_L006 unaligned CPTAC3 2c975488-ea18-4118-87bf-0d41cac751b6 6d2be3760303dce6d6e6f31844641fba { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03721.RNA-Seq.R2_L006.T C3L-03721 LUAD RNA-Seq tumor CPT0234700009 190614_UNC32-K00270_0182_BH7777BBXY_TCCAACGC-TTGGACTT_S23_L006_R2_001.fastq.gz 4876422066 FASTQ R2_L006 unaligned CPTAC3 3c124874-61f3-4882-867c-e4929f37efa4 84cd01930acd943cca048cd7fcd07af7 { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor' } -C3L-03721.RNA-Seq.transcriptome.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 a37156bb-f282-4b17-aac4-88b855a3d5fc.rna_seq.transcriptome.gdc_realn.bam 7167208471 BAM transcriptome harmonized CPTAC3 04bed51b-8fcc-4ef7-819b-783a75a9d805 a9099aae1d655fe58e0610adece13f6f { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03721.RNA-Seq.transcriptome.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 2fc7dc3d-9e17-4e28-9b3c-b69c601f3dab.rna_seq.transcriptome.gdc_realn.bam 9139249768 BAM transcriptome harmonized CPTAC3 daa5a853-4b1c-4ce3-8cf0-d0efa40fdcb0 cac7077bffa36f1d10141d9ce2dbd109 { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor' } +C3L-03721.RNA-Seq.chimeric.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 ba8781b9-be39-4c02-82ad-19ab29b7af15.rna_seq.chimeric.gdc_realn.bam 158639877 BAM chimeric harmonized CPTAC3 0422ab86-3f29-4f20-90ee-a8cfafa9c589 a237a8b10fc735ead7c17e615df3d413 { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03721.RNA-Seq.chimeric.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 d5b99bc0-037c-4843-8536-f4d06d607751.rna_seq.chimeric.gdc_realn.bam 44175288 BAM chimeric harmonized CPTAC3 a6b66353-a0ad-413a-8361-43d6d36bfb4d b8b02ffaee1a47eb8dd14e531e47feef { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor' } +C3L-03721.RNA-Seq.genomic.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 ba8781b9-be39-4c02-82ad-19ab29b7af15.rna_seq.genomic.gdc_realn.bam 9553535842 BAM genomic harmonized CPTAC3 de3c6dbd-580b-42db-9aa6-7e8565de37b4 14ee906ab41851d11e42b0f5110db9fe { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03721.RNA-Seq.genomic.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 d5b99bc0-037c-4843-8536-f4d06d607751.rna_seq.genomic.gdc_realn.bam 10903759860 BAM genomic harmonized CPTAC3 f30b2214-044f-44b7-9b8f-b9a2ac765411 3b1520a0399e6690fb4a00a58d505200 { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor' } +C3L-03721.RNA-Seq.R1_L006.A C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 190614_UNC32-K00270_0182_BH7777BBXY_CCGTGAAG-CAGTGGAT_S22_L006_R1_001.fastq.gz 3896456947 FASTQ R1_L006 unaligned CPTAC3 fe53295e-126a-4062-952c-c3e4214108ba 8596ad1327aba58834fbae67d22e6e89 { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-03721.RNA-Seq.R1_L006.T C3L-03721 LUAD RNA-Seq tumor CPT0234700009 190614_UNC32-K00270_0182_BH7777BBXY_TCCAACGC-TTGGACTT_S23_L006_R1_001.fastq.gz 4501554460 FASTQ R1_L006 unaligned CPTAC3 bdf57d83-d1be-45e2-ae74-6981c82ad434 34a227a6c776bf96dc1eff4726da933d { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03721.RNA-Seq.R2_L006.A C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 190614_UNC32-K00270_0182_BH7777BBXY_CCGTGAAG-CAGTGGAT_S22_L006_R2_001.fastq.gz 4192643077 FASTQ R2_L006 unaligned CPTAC3 2c975488-ea18-4118-87bf-0d41cac751b6 6d2be3760303dce6d6e6f31844641fba { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-03721.RNA-Seq.R2_L006.T C3L-03721 LUAD RNA-Seq tumor CPT0234700009 190614_UNC32-K00270_0182_BH7777BBXY_TCCAACGC-TTGGACTT_S23_L006_R2_001.fastq.gz 4876422066 FASTQ R2_L006 unaligned CPTAC3 3c124874-61f3-4882-867c-e4929f37efa4 84cd01930acd943cca048cd7fcd07af7 { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-03721.RNA-Seq.transcriptome.A.hg38 C3L-03721 LUAD RNA-Seq tissue_normal CPT0234710006 ba8781b9-be39-4c02-82ad-19ab29b7af15.rna_seq.transcriptome.gdc_realn.bam 8076242832 BAM transcriptome harmonized CPTAC3 7e068d1a-0387-4059-88de-36c07f8767e9 14737d97f174bfab25a9c7f8995b88ff { 'aliquot_tag': 'ALQ_85f7e886', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03721.RNA-Seq.transcriptome.T.hg38 C3L-03721 LUAD RNA-Seq tumor CPT0234700009 d5b99bc0-037c-4843-8536-f4d06d607751.rna_seq.transcriptome.gdc_realn.bam 10176546077 BAM transcriptome harmonized CPTAC3 57b4e654-14b6-4283-b09d-6bae3e937005 93fe109bb22046c62f8c18f7dcf7489c { 'aliquot_tag': 'ALQ_2828dca7', 'gdc_sample_type': 'Primary Tumor' } C3L-03721.WGS.N C3L-03721 LUAD WGS blood_normal CPT0235670002 CPT0235670002.WholeGenome.RP-1303.bam 66978454146 BAM aligned CPTAC3 3085ea60-6d0c-4312-98d9-4ef1aa8e0393 7a30150bc1a9eb15ee1c0a3c60caaa5f { 'aliquot_tag': 'ALQ_60f1012e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03721.WGS.N.hg38 C3L-03721 LUAD WGS blood_normal CPT0235670002 507112b8-b843-43a3-9e73-f3fdfb6bf2c9_wgs_gdc_realn.bam 97964658206 BAM harmonized CPTAC3 6bec62d0-ab99-4187-b854-4b061588c07e 9c3b8bcd2e4a47e30fd35a8e10cd0993 { 'aliquot_tag': 'ALQ_60f1012e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03721.WGS.T C3L-03721 LUAD WGS tumor CPT0234700006 CPT0234700006.WholeGenome.RP-1303.bam 83695007049 BAM aligned CPTAC3 c019e549-2eca-4bf9-9370-5ce054fc4fe6 a1d17e2efcca41d66f6a07b0a65cb311 { 'aliquot_tag': 'ALQ_b897c136', 'gdc_sample_type': 'Primary Tumor' } @@ -13950,16 +14832,16 @@ C3L-03726.miRNA-Seq.A C3L-03726 LUAD miRNA-Seq tissue_normal CPT0225640006 19072 C3L-03726.miRNA-Seq.A.hg38 C3L-03726 LUAD miRNA-Seq tissue_normal CPT0225640006 50be575c-cd4d-4f31-92ba-bf9b9b4536be_mirnaseq_gdc_realn.bam 230329871 BAM harmonized CPTAC3 a4c04c5a-f1af-4604-aec5-e6f633bea13c 91ca82476bad7f32adfcf1baa9bc8800 { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03726.miRNA-Seq.T C3L-03726 LUAD miRNA-Seq tumor CPT0225570009 190722_UNC31-K00269_0234_AH7VGTBBXY_CATGGC_S28_L004_R1_001.unaln.bam 221489169 BAM unaligned CPTAC3 f8a2289f-5d7d-4996-97ff-58d89c1c6466 d0bd3cc23c8b8f6ec5d340c947635a79 { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor' } C3L-03726.miRNA-Seq.T.hg38 C3L-03726 LUAD miRNA-Seq tumor CPT0225570009 fa427b82-a49a-4447-99b8-124ec0a3e387_mirnaseq_gdc_realn.bam 243138284 BAM harmonized CPTAC3 2794805c-e5ab-4d06-bb77-cd79d4c29c9e 9ba5a2eca9aaa81d8594eb9623e3765b { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor' } -C3L-03726.RNA-Seq.chimeric.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 eb4fa31c-fc39-4151-8478-7f5da4e348aa.rna_seq.chimeric.gdc_realn.bam 26310416 BAM chimeric harmonized CPTAC3 9479ab6c-dc38-44cc-9506-a497f3e5c9f5 be9a8ac26e11da10b7386f182bf4dc65 { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03726.RNA-Seq.chimeric.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 a7f9a5e8-318b-4f80-a4e1-30185b6fc5da.rna_seq.chimeric.gdc_realn.bam 35251824 BAM chimeric harmonized CPTAC3 e94b8430-6f3f-4d52-8121-63822703bcf5 56ef6b8ec2c24cf03894f91c5ee38adc { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor' } -C3L-03726.RNA-Seq.genomic.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 eb4fa31c-fc39-4151-8478-7f5da4e348aa.rna_seq.genomic.gdc_realn.bam 10078348262 BAM genomic harmonized CPTAC3 97e2235c-a70d-429b-b6a6-e076dbf6a93a 200d6b3e26372d73b626c441ad75953c { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03726.RNA-Seq.genomic.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 a7f9a5e8-318b-4f80-a4e1-30185b6fc5da.rna_seq.genomic.gdc_realn.bam 11655806246 BAM genomic harmonized CPTAC3 509469a3-6cd9-4cb8-9c33-96acd15d59f4 ac1619fb3154d84ba08cf973e7e910e9 { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor' } -C3L-03726.RNA-Seq.R1_L006.T C3L-03726 LUAD RNA-Seq tumor CPT0225570009 190604_UNC32-K00270_0177_AH7F5VBBXY_CGTTAGAA-TTCAGGTC_S22_L006_R1_001.fastq.gz 4076005533 FASTQ R1_L006 unaligned CPTAC3 7416b7eb-d016-4d5f-bb8c-5f6522fab3c6 eb7db91665cb0e5ab5c957acd57849f3 { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor' } -C3L-03726.RNA-Seq.R1_L007.A C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 190607_UNC32-K00270_0178_AH773TBBXY_CCTTCACC-GACGCTCC_S26_L007_R1_001.fastq.gz 3885824144 FASTQ R1_L007 unaligned CPTAC3 b70b30a2-fe04-4db8-9114-a93e8917d568 aa1f3e21ef25c8c5fbf79d05c4127bed { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03726.RNA-Seq.R2_L006.T C3L-03726 LUAD RNA-Seq tumor CPT0225570009 190604_UNC32-K00270_0177_AH7F5VBBXY_CGTTAGAA-TTCAGGTC_S22_L006_R2_001.fastq.gz 4643808466 FASTQ R2_L006 unaligned CPTAC3 4e181e91-e18e-4087-b243-0aa9d9cc1f26 8a4b6d916773987af70685d82458c90c { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor' } -C3L-03726.RNA-Seq.R2_L007.A C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 190607_UNC32-K00270_0178_AH773TBBXY_CCTTCACC-GACGCTCC_S26_L007_R2_001.fastq.gz 4221526815 FASTQ R2_L007 unaligned CPTAC3 9b248614-6222-40fe-8be5-c21de1b3ee60 f294d29ce31e71531e551431967ef727 { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03726.RNA-Seq.transcriptome.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 eb4fa31c-fc39-4151-8478-7f5da4e348aa.rna_seq.transcriptome.gdc_realn.bam 7888710578 BAM transcriptome harmonized CPTAC3 7bee2c14-a733-4d3e-8bca-62687eafa440 261da0d38929e9221d60fb2d5cf75d31 { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03726.RNA-Seq.transcriptome.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 a7f9a5e8-318b-4f80-a4e1-30185b6fc5da.rna_seq.transcriptome.gdc_realn.bam 8301409238 BAM transcriptome harmonized CPTAC3 cbb544ed-9a0c-4b1d-9ce9-cd4168c74afc abcffe20f9bbdcddadf852df71bdcab8 { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor' } +C3L-03726.RNA-Seq.chimeric.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 5aba5cdb-0206-4ffc-bb2b-6063b19bdd1c.rna_seq.chimeric.gdc_realn.bam 26303613 BAM chimeric harmonized CPTAC3 4d517290-89eb-4a9b-8b6f-38d093140ff6 97e8d70c3ed5cc01bbbb4781ebf77120 { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03726.RNA-Seq.chimeric.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 44e6996b-ff21-4a1e-8c45-683f18825854.rna_seq.chimeric.gdc_realn.bam 35246912 BAM chimeric harmonized CPTAC3 a0d47a31-4523-46f7-aa31-a9b0185a66d9 cee7202cbef8c074c7e1280f7ce5f7a9 { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor' } +C3L-03726.RNA-Seq.genomic.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 5aba5cdb-0206-4ffc-bb2b-6063b19bdd1c.rna_seq.genomic.gdc_realn.bam 10079330980 BAM genomic harmonized CPTAC3 ce473a20-5270-428f-bf56-56c4f634e5aa 63de9e33ffc4eec25b38be1d60910334 { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03726.RNA-Seq.genomic.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 44e6996b-ff21-4a1e-8c45-683f18825854.rna_seq.genomic.gdc_realn.bam 11657199152 BAM genomic harmonized CPTAC3 e5f43cde-88a4-4dcd-b0c3-cb603325c22f a074ed509a0a8a2321c80ee15a5fb1e4 { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor' } +C3L-03726.RNA-Seq.R1_L006.T C3L-03726 LUAD RNA-Seq tumor CPT0225570009 190604_UNC32-K00270_0177_AH7F5VBBXY_CGTTAGAA-TTCAGGTC_S22_L006_R1_001.fastq.gz 4076005533 FASTQ R1_L006 unaligned CPTAC3 7416b7eb-d016-4d5f-bb8c-5f6522fab3c6 eb7db91665cb0e5ab5c957acd57849f3 { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03726.RNA-Seq.R1_L007.A C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 190607_UNC32-K00270_0178_AH773TBBXY_CCTTCACC-GACGCTCC_S26_L007_R1_001.fastq.gz 3885824144 FASTQ R1_L007 unaligned CPTAC3 b70b30a2-fe04-4db8-9114-a93e8917d568 aa1f3e21ef25c8c5fbf79d05c4127bed { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-03726.RNA-Seq.R2_L006.T C3L-03726 LUAD RNA-Seq tumor CPT0225570009 190604_UNC32-K00270_0177_AH7F5VBBXY_CGTTAGAA-TTCAGGTC_S22_L006_R2_001.fastq.gz 4643808466 FASTQ R2_L006 unaligned CPTAC3 4e181e91-e18e-4087-b243-0aa9d9cc1f26 8a4b6d916773987af70685d82458c90c { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-03726.RNA-Seq.R2_L007.A C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 190607_UNC32-K00270_0178_AH773TBBXY_CCTTCACC-GACGCTCC_S26_L007_R2_001.fastq.gz 4221526815 FASTQ R2_L007 unaligned CPTAC3 9b248614-6222-40fe-8be5-c21de1b3ee60 f294d29ce31e71531e551431967ef727 { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-03726.RNA-Seq.transcriptome.A.hg38 C3L-03726 LUAD RNA-Seq tissue_normal CPT0225640006 5aba5cdb-0206-4ffc-bb2b-6063b19bdd1c.rna_seq.transcriptome.gdc_realn.bam 8902048725 BAM transcriptome harmonized CPTAC3 256492ef-764c-411f-b213-2f274b621227 730e6835ef53cb2669bf6170f517de23 { 'aliquot_tag': 'ALQ_ec96bf79', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03726.RNA-Seq.transcriptome.T.hg38 C3L-03726 LUAD RNA-Seq tumor CPT0225570009 44e6996b-ff21-4a1e-8c45-683f18825854.rna_seq.transcriptome.gdc_realn.bam 9264735441 BAM transcriptome harmonized CPTAC3 a525277e-a09f-4727-827c-fcbecefd2792 a6f4f3d29b5260b3fd74b2349146d7c7 { 'aliquot_tag': 'ALQ_bd1daa96', 'gdc_sample_type': 'Primary Tumor' } C3L-03726.WGS.N C3L-03726 LUAD WGS blood_normal CPT0226060002 CPT0226060002.WholeGenome.RP-1303.bam 71035178677 BAM aligned CPTAC3 d808ccbc-f339-43de-8573-0b8acfbc9b79 69d2908d5f5cd3a306330bd172515032 { 'aliquot_tag': 'ALQ_768ad180', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03726.WGS.N.hg38 C3L-03726 LUAD WGS blood_normal CPT0226060002 126101fc-f484-4fc1-832b-cebdb98357f9_wgs_gdc_realn.bam 103512559665 BAM harmonized CPTAC3 76ff4681-be57-4838-b588-558b30afda6d ce26a3218ac2e877eb97d0bfb0429fbc { 'aliquot_tag': 'ALQ_768ad180', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03726.WGS.T C3L-03726 LUAD WGS tumor CPT0225570006 CPT0225570006.WholeGenome.RP-1303.bam 67929053511 BAM aligned CPTAC3 a55ecf95-90bd-4f4b-8f83-0956de8bbb5d 1b5c5e390bd5b2e0b32705701c0a3107 { 'aliquot_tag': 'ALQ_2da2b707', 'gdc_sample_type': 'Primary Tumor' } @@ -13975,9 +14857,9 @@ C3L-03727.MethArray.Red.T C3L-03727 GBM Methylation Array tumor CPT0225730006 20 C3L-03727.miRNA-Seq.T C3L-03727 GBM miRNA-Seq tumor CPT0225730009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGTCA_S34_L002_R1_001.unaln.bam 227966354 BAM unaligned CPTAC3 6d10aabf-ba4a-46cd-8331-4e753b3b0a02 a10238c291f332f2e688bcea49cb841b { 'aliquot_tag': 'ALQ_555ad5d', 'gdc_sample_type': 'Primary Tumor' } C3L-03727.miRNA-Seq.T.hg38 C3L-03727 GBM miRNA-Seq tumor CPT0225730009 7404ef25-0fe7-454e-9b8e-c633ba462c9a_mirnaseq_gdc_realn.bam 252948167 BAM harmonized CPTAC3 9b428aa7-ad5b-442e-b156-83c607837d07 cdde50d3675265969a802457c4d01a01 { 'aliquot_tag': 'ALQ_555ad5d', 'gdc_sample_type': 'Primary Tumor' } C3L-03727.RNA-Seq.chimeric.T.hg38 C3L-03727 GBM RNA-Seq tumor CPT0225730009 c8b55027-80ef-4748-940a-1c97e0e12116.rna_seq.chimeric.gdc_realn.bam 82984573 BAM chimeric harmonized CPTAC3 94460853-32ac-4364-b891-c9c4eb46ddfb 03869603160e1ee79e6358ca8058ea47 { 'aliquot_tag': 'ALQ_555ad5d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03727.RNA-Seq.genomic.T.hg38 C3L-03727 GBM RNA-Seq tumor CPT0225730009 c8b55027-80ef-4748-940a-1c97e0e12116.rna_seq.genomic.gdc_realn.bam 9003308770 BAM genomic harmonized CPTAC3 0ab0f047-fa2c-4372-a647-bc3357efe3e9 dd9c12a88ccfd06dd0000c2ff0209fca { 'aliquot_tag': 'ALQ_555ad5d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03727.RNA-Seq.R1_L006.T C3L-03727 GBM RNA-Seq tumor CPT0225730009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R1_001.fastq.gz 4340578448 FASTQ R1_L006 unaligned CPTAC3 b526132b-252b-4f64-a2ca-38cc2054e315 4df09db66023d0c55395f0f81b721a9d { 'aliquot_tag': 'ALQ_555ad5d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03727.RNA-Seq.R2_L006.T C3L-03727 GBM RNA-Seq tumor CPT0225730009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R2_001.fastq.gz 4701005765 FASTQ R2_L006 unaligned CPTAC3 7f9a8462-d332-440b-829b-cb89534d53ac 827b7ba71c3ceb8b09b5abb936d43f79 { 'aliquot_tag': 'ALQ_555ad5d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03727.RNA-Seq.genomic.T.hg38 C3L-03727 GBM RNA-Seq tumor CPT0225730009 c8b55027-80ef-4748-940a-1c97e0e12116.rna_seq.genomic.gdc_realn.bam 9003308770 BAM genomic harmonized CPTAC3 c494ec13-2e4f-4696-a24c-f6b33aaa0637 dd9c12a88ccfd06dd0000c2ff0209fca { 'aliquot_tag': 'ALQ_555ad5d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03727.RNA-Seq.R1_L006.T C3L-03727 GBM RNA-Seq tumor CPT0225730009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R1_001.fastq.gz 4340578448 FASTQ R1_L006 unaligned CPTAC3 b526132b-252b-4f64-a2ca-38cc2054e315 4df09db66023d0c55395f0f81b721a9d { 'aliquot_tag': 'ALQ_555ad5d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03727.RNA-Seq.R2_L006.T C3L-03727 GBM RNA-Seq tumor CPT0225730009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATGTCA_S20_L006_R2_001.fastq.gz 4701005765 FASTQ R2_L006 unaligned CPTAC3 7f9a8462-d332-440b-829b-cb89534d53ac 827b7ba71c3ceb8b09b5abb936d43f79 { 'aliquot_tag': 'ALQ_555ad5d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-03727.RNA-Seq.transcriptome.T.hg38 C3L-03727 GBM RNA-Seq tumor CPT0225730009 c8b55027-80ef-4748-940a-1c97e0e12116.rna_seq.transcriptome.gdc_realn.bam 11099928268 BAM transcriptome harmonized CPTAC3 3bb03e98-aa2b-4449-91cc-f70f79b93a31 bbf4d381af2ec4b41cf6892cdf7eaa58 { 'aliquot_tag': 'ALQ_555ad5d', 'gdc_sample_type': 'Primary Tumor' } C3L-03727.WGS.N C3L-03727 GBM WGS blood_normal CPT0226070002 CPT0226070002.WholeGenome.RP-1303.bam 57874549766 BAM aligned CPTAC3 dabeaec9-1bd1-438c-96d8-4563576a1313 13184df7e9d6bebad213634f6684a0ec { 'aliquot_tag': 'ALQ_4beaf830', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03727.WGS.N.hg38 C3L-03727 GBM WGS blood_normal CPT0226070002 c9645e62-b3e4-4624-90e1-dfb6cec6a2e1_wgs_gdc_realn.bam 83183578779 BAM harmonized CPTAC3 7247fffc-8e61-4aaf-9730-d778464a2102 25ba974c7dee61f760bcef752a72c9dd { 'aliquot_tag': 'ALQ_4beaf830', 'gdc_sample_type': 'Blood Derived Normal' } @@ -13992,9 +14874,9 @@ C3L-03728.MethArray.Red.T C3L-03728 GBM Methylation Array tumor CPT0225760006 20 C3L-03728.miRNA-Seq.T C3L-03728 GBM miRNA-Seq tumor CPT0225760009 190206_UNC31-K00269_0191_AH2WY5BBXY_CCGTCC_S33_L002_R1_001.unaln.bam 185612634 BAM unaligned CPTAC3 c72f981f-c656-4439-8209-ea0232f27557 6d3ef8d1f31b90e555564ba2731b77dd { 'aliquot_tag': 'ALQ_cdb5222d', 'gdc_sample_type': 'Primary Tumor' } C3L-03728.miRNA-Seq.T.hg38 C3L-03728 GBM miRNA-Seq tumor CPT0225760009 9132e3c7-f895-4a21-800c-dda668a465cd_mirnaseq_gdc_realn.bam 204370357 BAM harmonized CPTAC3 d14d95ca-a9ae-4c0b-9ca4-a184072820c0 4f6940637448b4b2707bfca3a04a74ae { 'aliquot_tag': 'ALQ_cdb5222d', 'gdc_sample_type': 'Primary Tumor' } C3L-03728.RNA-Seq.chimeric.T.hg38 C3L-03728 GBM RNA-Seq tumor CPT0225760009 1b32ed8c-74eb-4b2b-8383-fb090bdbcd17.rna_seq.chimeric.gdc_realn.bam 95679507 BAM chimeric harmonized CPTAC3 91ee5330-5d98-4395-bab9-c295521069cc 370a58d3cf4acc68f6c49def90f4e18c { 'aliquot_tag': 'ALQ_cdb5222d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03728.RNA-Seq.genomic.T.hg38 C3L-03728 GBM RNA-Seq tumor CPT0225760009 1b32ed8c-74eb-4b2b-8383-fb090bdbcd17.rna_seq.genomic.gdc_realn.bam 9078827772 BAM genomic harmonized CPTAC3 25ce8f57-9df7-4183-8b9f-dd040519f76c 18b6804c31eadef92d155c7b6ad9ccfd { 'aliquot_tag': 'ALQ_cdb5222d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03728.RNA-Seq.R1_L006.T C3L-03728 GBM RNA-Seq tumor CPT0225760009 190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4311652288 FASTQ R1_L006 unaligned CPTAC3 b4baf937-60b5-42f9-a33e-1209aa16242b e1a7531d449aa9012fee9747c85cdbf2 { 'aliquot_tag': 'ALQ_cdb5222d', 'gdc_sample_type': 'Primary Tumor' } -C3L-03728.RNA-Seq.R2_L006.T C3L-03728 GBM RNA-Seq tumor CPT0225760009 190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4390866548 FASTQ R2_L006 unaligned CPTAC3 1c99ba97-600a-4b1f-8896-eaa03fcb0372 b042f7e6520aad7088e5e25eedf03980 { 'aliquot_tag': 'ALQ_cdb5222d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03728.RNA-Seq.genomic.T.hg38 C3L-03728 GBM RNA-Seq tumor CPT0225760009 1b32ed8c-74eb-4b2b-8383-fb090bdbcd17.rna_seq.genomic.gdc_realn.bam 9078827772 BAM genomic harmonized CPTAC3 61cdb955-ccd0-4f5c-935c-d0f9994d1cb4 18b6804c31eadef92d155c7b6ad9ccfd { 'aliquot_tag': 'ALQ_cdb5222d', 'gdc_sample_type': 'Primary Tumor' } +C3L-03728.RNA-Seq.R1_L006.T C3L-03728 GBM RNA-Seq tumor CPT0225760009 190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4311652288 FASTQ R1_L006 unaligned CPTAC3 b4baf937-60b5-42f9-a33e-1209aa16242b e1a7531d449aa9012fee9747c85cdbf2 { 'aliquot_tag': 'ALQ_cdb5222d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03728.RNA-Seq.R2_L006.T C3L-03728 GBM RNA-Seq tumor CPT0225760009 190205_UNC32-K00270_0144_BH3M3NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4390866548 FASTQ R2_L006 unaligned CPTAC3 1c99ba97-600a-4b1f-8896-eaa03fcb0372 b042f7e6520aad7088e5e25eedf03980 { 'aliquot_tag': 'ALQ_cdb5222d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-03728.RNA-Seq.transcriptome.T.hg38 C3L-03728 GBM RNA-Seq tumor CPT0225760009 1b32ed8c-74eb-4b2b-8383-fb090bdbcd17.rna_seq.transcriptome.gdc_realn.bam 9887316159 BAM transcriptome harmonized CPTAC3 311495cf-f412-47e7-ad1a-02280d820554 09d1ebfbe7337b022105a9c12127769b { 'aliquot_tag': 'ALQ_cdb5222d', 'gdc_sample_type': 'Primary Tumor' } C3L-03728.WGS.N C3L-03728 GBM WGS blood_normal CPT0226080002 CPT0226080002.WholeGenome.RP-1303.bam 57921937659 BAM aligned CPTAC3 2307c4bb-6f8e-4223-96dd-2506f0c1bc72 b1710ba80321aef12ea8311840ae9c52 { 'aliquot_tag': 'ALQ_c9ba6fe1', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03728.WGS.N.hg38 C3L-03728 GBM WGS blood_normal CPT0226080002 97ec897b-c7b9-4ccb-8bd0-caa209d71254_wgs_gdc_realn.bam 83720461591 BAM harmonized CPTAC3 a08af25b-9aed-42e8-9bb2-e32873fe5874 ec976ce17710827ddb8ed4c88d82b848 { 'aliquot_tag': 'ALQ_c9ba6fe1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14008,11 +14890,11 @@ C3L-03733.MethArray.Green.T C3L-03733 GBM Methylation Array tumor CPT0388870006 C3L-03733.MethArray.Red.T C3L-03733 GBM Methylation Array tumor CPT0388870006 204930630107_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 0d4726e6-9601-4df3-83a1-7c67f3320910 7df49410d21bf695e7fb42cb80f1ec24 { 'aliquot_tag': 'ALQ_7650cd92', 'gdc_sample_type': 'Primary Tumor' } C3L-03733.miRNA-Seq.T C3L-03733 GBM miRNA-Seq tumor CPT0388870009 201209_UNC32-K00270_0265_AHJ55WBBXY_GATCAG_S30_L007_R1_001.unaln.bam 223566229 BAM unaligned CPTAC3 10d636a4-81d8-42c4-a6b0-c6a7fd06b140 4f8c18eeb73beece79024f090ea0aa73 { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor' } C3L-03733.miRNA-Seq.T.hg38 C3L-03733 GBM miRNA-Seq tumor CPT0388870009 77bec3e5-595f-420f-a23b-59bffbcccf44_mirnaseq_gdc_realn.bam 246530370 BAM harmonized CPTAC3 706c4a4d-10a9-444a-9a5f-c768b944806d 51898f31e977bea81f53453df1887162 { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor' } -C3L-03733.RNA-Seq.chimeric.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 97ee7296-7470-45d8-8353-7e11cd537a41.rna_seq.chimeric.gdc_realn.bam 266652397 BAM chimeric harmonized CPTAC3 b3daf9ad-b0b9-415c-b8cc-ef408f35bde5 dd075f149f73976e70f86ad4c5ab6115 { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor' } -C3L-03733.RNA-Seq.genomic.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 97ee7296-7470-45d8-8353-7e11cd537a41.rna_seq.genomic.gdc_realn.bam 8072691075 BAM genomic harmonized CPTAC3 a605a275-a926-4536-8d33-362729a6d51d 154fcf360674b4895569c7fdbcfdbc2f { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor' } -C3L-03733.RNA-Seq.R1_L001.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3784619809 FASTQ R1_L001 unaligned CPTAC3 d3c8b80a-f15c-47ad-927e-96483a71a4ac 8a7625be123cf1142d9d514d3dd2f0fe { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor' } -C3L-03733.RNA-Seq.R2_L001.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4354534233 FASTQ R2_L001 unaligned CPTAC3 d68a3a3f-d8d9-488f-b581-3eb6bf3c545f 3417e6f248552d41697758862f7c9a80 { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor' } -C3L-03733.RNA-Seq.transcriptome.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 97ee7296-7470-45d8-8353-7e11cd537a41.rna_seq.transcriptome.gdc_realn.bam 8361762021 BAM transcriptome harmonized CPTAC3 8d20e81a-8244-4331-9dd7-f3b3dc93823c 2c58936231389fae9a33064d88c4bf7c { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor' } +C3L-03733.RNA-Seq.chimeric.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.chimeric.gdc_realn.bam 266646753 BAM chimeric harmonized CPTAC3 dc0a3251-2040-4361-bb9a-4f3b78cffbc6 aeaf82ea312c7b78a22094b977e0a499 { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor' } +C3L-03733.RNA-Seq.genomic.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.genomic.gdc_realn.bam 8079501100 BAM genomic harmonized CPTAC3 602fb004-e784-4254-b4af-0f64915cf9fd 910f857c7b6b9aae00880ae8ddc28fca { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor' } +C3L-03733.RNA-Seq.R1_L001.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3784619809 FASTQ R1_L001 unaligned CPTAC3 d3c8b80a-f15c-47ad-927e-96483a71a4ac 8a7625be123cf1142d9d514d3dd2f0fe { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-03733.RNA-Seq.R2_L001.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4354534233 FASTQ R2_L001 unaligned CPTAC3 d68a3a3f-d8d9-488f-b581-3eb6bf3c545f 3417e6f248552d41697758862f7c9a80 { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-03733.RNA-Seq.transcriptome.T.hg38 C3L-03733 GBM RNA-Seq tumor CPT0388870009 d180dbc6-9373-413c-9d29-0b433f2306d8.rna_seq.transcriptome.gdc_realn.bam 9601312087 BAM transcriptome harmonized CPTAC3 375fc4be-2a70-4779-a225-daec566e15d0 928df5dbec6cf5ef5dad8d3ecc38d402 { 'aliquot_tag': 'ALQ_e6efd003', 'gdc_sample_type': 'Primary Tumor' } C3L-03733.WGS.N C3L-03733 GBM WGS blood_normal CPT0388900002 CPT0388900002.WholeGenome.RP-2158.bam 25383296813 BAM aligned CPTAC3 cd628747-fd76-4da6-97cb-6e20282d4b6a f60aa2f2e02306c83488611b2cf877ce { 'aliquot_tag': 'ALQ_841063e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03733.WGS.N.hg38 C3L-03733 GBM WGS blood_normal CPT0388900002 b5c33706-5e86-42f3-9fd2-ab09c7614d05_wgs_gdc_realn.bam 73835643752 BAM harmonized CPTAC3 4b5cd4a1-6a8d-4d03-a714-0d819779e047 d5950930c8028fea2b5fbf987837f528 { 'aliquot_tag': 'ALQ_841063e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03733.WGS.T C3L-03733 GBM WGS tumor CPT0388870006 CPT0388870006.WholeGenome.RP-2158.bam 21210221177 BAM aligned CPTAC3 085c2ec3-e073-4e33-b105-b7a31acfd571 930a132c5a56fb79f5a2efd0e2be2ff5 { 'aliquot_tag': 'ALQ_7650cd92', 'gdc_sample_type': 'Primary Tumor' } @@ -14025,11 +14907,11 @@ C3L-03735.MethArray.Green.T C3L-03735 GBM Methylation Array tumor CPT0264120006 C3L-03735.MethArray.Red.T C3L-03735 GBM Methylation Array tumor CPT0264120006 204372030139_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 97fac48f-ce44-476b-b272-67f76253e6f8 b220788c886cc9e8318244659e95dda1 { 'aliquot_tag': 'ALQ_5cee7f2f', 'gdc_sample_type': 'Primary Tumor' } C3L-03735.miRNA-Seq.T C3L-03735 GBM miRNA-Seq tumor CPT0264120009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAACTA_S5_L001_R1_001.unaln.bam 263228813 BAM unaligned CPTAC3 fa531fa4-4220-40f6-8a5d-1241957f540c c0d9e90d92febf9ea2a53179e4419985 { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor' } C3L-03735.miRNA-Seq.T.hg38 C3L-03735 GBM miRNA-Seq tumor CPT0264120009 ccc75cf4-aaac-47ab-8dd1-9fb1b8e8c38a_mirnaseq_gdc_realn.bam 290946160 BAM harmonized CPTAC3 bcadc513-5cc4-4fcd-a3fc-4cd9f26e1265 ce6708b82f2dc00ec8553b99617812db { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor' } -C3L-03735.RNA-Seq.chimeric.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 1eac19a8-6237-40cf-8e7f-e1ab263dbd54.rna_seq.chimeric.gdc_realn.bam 37328768 BAM chimeric harmonized CPTAC3 f1615400-0887-4607-88cd-deb101c9c0da 92e7ef433cf70050c5c27e726c283eeb { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor' } -C3L-03735.RNA-Seq.genomic.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 1eac19a8-6237-40cf-8e7f-e1ab263dbd54.rna_seq.genomic.gdc_realn.bam 8407392533 BAM genomic harmonized CPTAC3 8edb4f7d-485d-47f4-8fa8-03a82a74dccf 446f08df87935a2e67ca39c52905fada { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor' } -C3L-03735.RNA-Seq.R1_L005.T C3L-03735 GBM RNA-Seq tumor CPT0264120009 200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R1_001.fastq.gz 4085825069 FASTQ R1_L005 unaligned CPTAC3 fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998 7a81966aa194b821b5c8a5374a282c11 { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor' } -C3L-03735.RNA-Seq.R2_L005.T C3L-03735 GBM RNA-Seq tumor CPT0264120009 200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R2_001.fastq.gz 4505460324 FASTQ R2_L005 unaligned CPTAC3 0552d99d-65f1-45ec-8a79-41d6de621a90 f8af80602ba31cbb4a4650e3bd6be82a { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor' } -C3L-03735.RNA-Seq.transcriptome.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 1eac19a8-6237-40cf-8e7f-e1ab263dbd54.rna_seq.transcriptome.gdc_realn.bam 8403679564 BAM transcriptome harmonized CPTAC3 6934c39a-7535-415f-8371-81d6199e45a7 8f8ac5b8e59de7682bee5f3ad82bebcd { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor' } +C3L-03735.RNA-Seq.chimeric.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 91735efa-de65-48f4-bbee-3b4c24bc98f3.rna_seq.chimeric.gdc_realn.bam 37307265 BAM chimeric harmonized CPTAC3 5131b726-cc52-4015-aea9-b521dd383c3f a359a552a2e0d8baabab651b41d0b3ca { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor' } +C3L-03735.RNA-Seq.genomic.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 91735efa-de65-48f4-bbee-3b4c24bc98f3.rna_seq.genomic.gdc_realn.bam 8408398102 BAM genomic harmonized CPTAC3 60b2a739-6f77-4d4a-925a-4b6d1116b180 cf7fb7d922cef32f9e99e5892725940b { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor' } +C3L-03735.RNA-Seq.R1_L005.T C3L-03735 GBM RNA-Seq tumor CPT0264120009 200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R1_001.fastq.gz 4085825069 FASTQ R1_L005 unaligned CPTAC3 fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998 7a81966aa194b821b5c8a5374a282c11 { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-03735.RNA-Seq.R2_L005.T C3L-03735 GBM RNA-Seq tumor CPT0264120009 200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R2_001.fastq.gz 4505460324 FASTQ R2_L005 unaligned CPTAC3 0552d99d-65f1-45ec-8a79-41d6de621a90 f8af80602ba31cbb4a4650e3bd6be82a { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-03735.RNA-Seq.transcriptome.T.hg38 C3L-03735 GBM RNA-Seq tumor CPT0264120009 91735efa-de65-48f4-bbee-3b4c24bc98f3.rna_seq.transcriptome.gdc_realn.bam 9715992122 BAM transcriptome harmonized CPTAC3 5d7f1f01-1fc6-459b-ac9a-af2af0892aec e786ba92e91db72bebacf355699e76bd { 'aliquot_tag': 'ALQ_cc5162be', 'gdc_sample_type': 'Primary Tumor' } C3L-03735.WGS.N C3L-03735 GBM WGS blood_normal CPT0265770002 CPT0265770002.WholeGenome.RP-2158.bam 30302599855 BAM aligned CPTAC3 15654810-dd84-4d60-b564-a09430083c09 bd543e3919839303d126dc6bb82f5e66 { 'aliquot_tag': 'ALQ_e34ddcef', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03735.WGS.N.hg38 C3L-03735 GBM WGS blood_normal CPT0265770002 e7d56953-30f9-417c-9e40-1462762bea4f_wgs_gdc_realn.bam 90921510968 BAM harmonized CPTAC3 12fe818c-9d4e-47ea-b5d5-b697846bbecb bb0201c80c21f189595e46a7e18bf710 { 'aliquot_tag': 'ALQ_e34ddcef', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03735.WGS.T C3L-03735 GBM WGS tumor CPT0264120006 CPT0264120006.WholeGenome.RP-2158.bam 25957361172 BAM aligned CPTAC3 528458ab-ac6e-401f-8f36-1d58b1412a89 b72dabf1b77615c8b8107fbbed0e8e23 { 'aliquot_tag': 'ALQ_5cee7f2f', 'gdc_sample_type': 'Primary Tumor' } @@ -14042,11 +14924,11 @@ C3L-03740.MethArray.Green.T C3L-03740 GBM Methylation Array tumor CPT0249420006 C3L-03740.MethArray.Red.T C3L-03740 GBM Methylation Array tumor CPT0249420006 204367490043_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 54320d84-5e1a-491e-97d5-9cae1e2f84bc 692b39d4f658cf8b968543ca5664614b { 'aliquot_tag': 'ALQ_2fd18821', 'gdc_sample_type': 'Primary Tumor' } C3L-03740.miRNA-Seq.T C3L-03740 GBM miRNA-Seq tumor CPT0249420013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTAGCT_S38_L008_R1_001.unaln.bam 296311765 BAM unaligned CPTAC3 00f61c28-9d49-4409-9ba8-ad80ec422b6b d5a840abb8393cdecd2900e612d222c6 { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor' } C3L-03740.miRNA-Seq.T.hg38 C3L-03740 GBM miRNA-Seq tumor CPT0249420013 15d9eea2-4c08-49f3-99e8-e7423a98396f_mirnaseq_gdc_realn.bam 327607910 BAM harmonized CPTAC3 1c4158b3-be2d-42ce-a13e-1df099134333 07f87bb4f531f7cb9486ed91a4f24b51 { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor' } -C3L-03740.RNA-Seq.chimeric.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 11f62fc8-b09f-42b4-9a7d-7c957dffa4ae.rna_seq.chimeric.gdc_realn.bam 31624260 BAM chimeric harmonized CPTAC3 36f875b2-ce2c-4fb6-9390-dc23f9b02d34 95e21df47d5f1002ae86ee11216b0443 { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor' } -C3L-03740.RNA-Seq.genomic.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 11f62fc8-b09f-42b4-9a7d-7c957dffa4ae.rna_seq.genomic.gdc_realn.bam 8338581698 BAM genomic harmonized CPTAC3 5a6eb036-e744-455f-b433-cde419848ce5 6ba1987b9dece0c0c9d997dff13fb486 { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor' } -C3L-03740.RNA-Seq.R1_L008.T C3L-03740 GBM RNA-Seq tumor CPT0249420013 200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R1_001.fastq.gz 4101708629 FASTQ R1_L008 unaligned CPTAC3 545a4b63-a08b-42bf-93f8-6b9faa29e42d 12cbe468f45f06aa4977560e7ccbe952 { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor' } -C3L-03740.RNA-Seq.R2_L008.T C3L-03740 GBM RNA-Seq tumor CPT0249420013 200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R2_001.fastq.gz 4490266666 FASTQ R2_L008 unaligned CPTAC3 04802ae4-6a8a-400d-87e5-2822568997c5 b4f97787bfe789630d545698dc81470e { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor' } -C3L-03740.RNA-Seq.transcriptome.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 11f62fc8-b09f-42b4-9a7d-7c957dffa4ae.rna_seq.transcriptome.gdc_realn.bam 8807141511 BAM transcriptome harmonized CPTAC3 8b5e0390-63a2-4ae9-a2a2-f8528d953e9f dca25bef15648e48163e9072b712aab0 { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor' } +C3L-03740.RNA-Seq.chimeric.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 4e83f0d1-c225-4d25-9e8e-d443999493d4.rna_seq.chimeric.gdc_realn.bam 31599562 BAM chimeric harmonized CPTAC3 db35be7e-96f4-404c-ad98-d051de8710fb d69a581867372952c60a5fdbaf4ea334 { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor' } +C3L-03740.RNA-Seq.genomic.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 4e83f0d1-c225-4d25-9e8e-d443999493d4.rna_seq.genomic.gdc_realn.bam 8340159150 BAM genomic harmonized CPTAC3 bd934086-82fb-41e1-b001-5ce601276307 a417bb7e99c9abfaa5dcc2c3e54fb856 { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor' } +C3L-03740.RNA-Seq.R1_L008.T C3L-03740 GBM RNA-Seq tumor CPT0249420013 200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R1_001.fastq.gz 4101708629 FASTQ R1_L008 unaligned CPTAC3 545a4b63-a08b-42bf-93f8-6b9faa29e42d 12cbe468f45f06aa4977560e7ccbe952 { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-03740.RNA-Seq.R2_L008.T C3L-03740 GBM RNA-Seq tumor CPT0249420013 200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R2_001.fastq.gz 4490266666 FASTQ R2_L008 unaligned CPTAC3 04802ae4-6a8a-400d-87e5-2822568997c5 b4f97787bfe789630d545698dc81470e { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-03740.RNA-Seq.transcriptome.T.hg38 C3L-03740 GBM RNA-Seq tumor CPT0249420013 4e83f0d1-c225-4d25-9e8e-d443999493d4.rna_seq.transcriptome.gdc_realn.bam 10233605535 BAM transcriptome harmonized CPTAC3 cbeb1b04-7d2a-4c13-95be-67e56cdb44c3 856da3f9fcffc5dff40bd648640d60e6 { 'aliquot_tag': 'ALQ_46a04def', 'gdc_sample_type': 'Primary Tumor' } C3L-03740.WGS.N C3L-03740 GBM WGS blood_normal CPT0250420002 CPT0250420002.WholeGenome.RP-2158.bam 21405427914 BAM aligned CPTAC3 c47ab067-c1c5-42b1-9e33-e4dc928e1a81 e2373336f47dfedaa92e136ac1ba879b { 'aliquot_tag': 'ALQ_718e0975', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03740.WGS.N.hg38 C3L-03740 GBM WGS blood_normal CPT0250420002 6983e835-2ae6-468a-adac-ec0464461c65_wgs_gdc_realn.bam 64109908623 BAM harmonized CPTAC3 75913059-161e-4163-8bcd-7682c8b705bd 7f97cad14161a8c7e1914e45e835afe2 { 'aliquot_tag': 'ALQ_718e0975', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03740.WGS.T C3L-03740 GBM WGS tumor CPT0249420006 CPT0249420006.WholeGenome.RP-2158.bam 29989797887 BAM aligned CPTAC3 2143c8e9-b69d-4741-be28-b2d942baae88 b0cecb8ab9ec2beeb1f05b4c7900c477 { 'aliquot_tag': 'ALQ_2fd18821', 'gdc_sample_type': 'Primary Tumor' } @@ -14065,12 +14947,12 @@ C3L-03743.miRNA-Seq.T C3L-03743 PDA miRNA-Seq tumor CPT0264150006 190712_UNC32-K C3L-03743.miRNA-Seq.T.hg38 C3L-03743 PDA miRNA-Seq tumor CPT0264150006 35c4f7f6-8592-4253-8f98-0e13191d86a5_mirnaseq_gdc_realn.bam 148592559 BAM harmonized CPTAC3 8eab6531-d6cc-419a-b7f9-874e9893783b b66f78f338c041cc8efa74ef3e21b60f { 'aliquot_tag': 'ALQ_eecea33f', 'gdc_sample_type': 'Primary Tumor' } C3L-03743.RNA-Seq.chimeric.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 9daa12a8-2b13-4401-9f60-9738260ff438.rna_seq.chimeric.gdc_realn.bam 40791518 BAM chimeric harmonized CPTAC3 e260b1b6-738e-4d69-b072-48a0cc970b3a a04c85ae9bf3b063079c01395f2d17ec { 'aliquot_tag': 'ALQ_86e17a1f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03743.RNA-Seq.chimeric.T.hg38 C3L-03743 PDA RNA-Seq tumor CPT0264150006 a115123a-e10d-4f46-b069-9bd57e29d93b.rna_seq.chimeric.gdc_realn.bam 34614800 BAM chimeric harmonized CPTAC3 16acb084-d312-4e3b-a2e8-cd7db393f13f c6da1d4f8e27d09bbcb54d73c2770633 { 'aliquot_tag': 'ALQ_eecea33f', 'gdc_sample_type': 'Primary Tumor' } -C3L-03743.RNA-Seq.genomic.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 9daa12a8-2b13-4401-9f60-9738260ff438.rna_seq.genomic.gdc_realn.bam 7946778805 BAM genomic harmonized CPTAC3 0aa72100-1352-4761-88f0-89ebe8d8ecf2 bb7372c66034ac9bbe6444c2b44291e7 { 'aliquot_tag': 'ALQ_86e17a1f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03743.RNA-Seq.genomic.T.hg38 C3L-03743 PDA RNA-Seq tumor CPT0264150006 a115123a-e10d-4f46-b069-9bd57e29d93b.rna_seq.genomic.gdc_realn.bam 8948929869 BAM genomic harmonized CPTAC3 18730770-6844-4e84-bcaa-f927c233ce38 17a34d211e441a14fc5e794bb5c83f28 { 'aliquot_tag': 'ALQ_eecea33f', 'gdc_sample_type': 'Primary Tumor' } -C3L-03743.RNA-Seq.R1_L001.T C3L-03743 PDA RNA-Seq tumor CPT0264150006 190702_UNC32-K00270_0188_BH7CLJBBXY_TACTCATA-CCTGTGGC_S2_L001_R1_001.fastq.gz 4230524943 FASTQ R1_L001 unaligned CPTAC3 29514c3a-58c2-476f-a567-72ed756bf086 f1473c38a39a2fbc2bec0cafe5c6065e { 'aliquot_tag': 'ALQ_eecea33f', 'gdc_sample_type': 'Primary Tumor' } -C3L-03743.RNA-Seq.R1_L002.A C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 190715_UNC31-K00269_0232_BH7H7CBBXY_CGGACAAC-TCCGGATT_S5_L002_R1_001.fastq.gz 3837391076 FASTQ R1_L002 unaligned CPTAC3 11338202-66e3-4dd0-9f5a-f2aac1b86a34 8c15eb7adedc6e14112d71e9ffffde3a { 'aliquot_tag': 'ALQ_86e17a1f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03743.RNA-Seq.R2_L001.T C3L-03743 PDA RNA-Seq tumor CPT0264150006 190702_UNC32-K00270_0188_BH7CLJBBXY_TACTCATA-CCTGTGGC_S2_L001_R2_001.fastq.gz 4689247891 FASTQ R2_L001 unaligned CPTAC3 8a695131-9653-4fc6-b000-281393a6e318 35ce8dfa2dee79f12ce59c53c90b9d8a { 'aliquot_tag': 'ALQ_eecea33f', 'gdc_sample_type': 'Primary Tumor' } -C3L-03743.RNA-Seq.R2_L002.A C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 190715_UNC31-K00269_0232_BH7H7CBBXY_CGGACAAC-TCCGGATT_S5_L002_R2_001.fastq.gz 4110204192 FASTQ R2_L002 unaligned CPTAC3 b64a6935-7492-4441-888c-9198b4d8b738 a586c265dd63748cb93001ab8309f386 { 'aliquot_tag': 'ALQ_86e17a1f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03743.RNA-Seq.genomic.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 9daa12a8-2b13-4401-9f60-9738260ff438.rna_seq.genomic.gdc_realn.bam 7946778805 BAM genomic harmonized CPTAC3 2083ece5-80fe-423a-a2e8-d74a213bd144 bb7372c66034ac9bbe6444c2b44291e7 { 'aliquot_tag': 'ALQ_86e17a1f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03743.RNA-Seq.genomic.T.hg38 C3L-03743 PDA RNA-Seq tumor CPT0264150006 a115123a-e10d-4f46-b069-9bd57e29d93b.rna_seq.genomic.gdc_realn.bam 8948929869 BAM genomic harmonized CPTAC3 ef2f9bd7-f152-4c7a-8ff0-e656974a00e8 17a34d211e441a14fc5e794bb5c83f28 { 'aliquot_tag': 'ALQ_eecea33f', 'gdc_sample_type': 'Primary Tumor' } +C3L-03743.RNA-Seq.R1_L001.T C3L-03743 PDA RNA-Seq tumor CPT0264150006 190702_UNC32-K00270_0188_BH7CLJBBXY_TACTCATA-CCTGTGGC_S2_L001_R1_001.fastq.gz 4230524943 FASTQ R1_L001 unaligned CPTAC3 29514c3a-58c2-476f-a567-72ed756bf086 f1473c38a39a2fbc2bec0cafe5c6065e { 'aliquot_tag': 'ALQ_eecea33f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-03743.RNA-Seq.R1_L002.A C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 190715_UNC31-K00269_0232_BH7H7CBBXY_CGGACAAC-TCCGGATT_S5_L002_R1_001.fastq.gz 3837391076 FASTQ R1_L002 unaligned CPTAC3 11338202-66e3-4dd0-9f5a-f2aac1b86a34 8c15eb7adedc6e14112d71e9ffffde3a { 'aliquot_tag': 'ALQ_86e17a1f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-03743.RNA-Seq.R2_L001.T C3L-03743 PDA RNA-Seq tumor CPT0264150006 190702_UNC32-K00270_0188_BH7CLJBBXY_TACTCATA-CCTGTGGC_S2_L001_R2_001.fastq.gz 4689247891 FASTQ R2_L001 unaligned CPTAC3 8a695131-9653-4fc6-b000-281393a6e318 35ce8dfa2dee79f12ce59c53c90b9d8a { 'aliquot_tag': 'ALQ_eecea33f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-03743.RNA-Seq.R2_L002.A C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 190715_UNC31-K00269_0232_BH7H7CBBXY_CGGACAAC-TCCGGATT_S5_L002_R2_001.fastq.gz 4110204192 FASTQ R2_L002 unaligned CPTAC3 b64a6935-7492-4441-888c-9198b4d8b738 a586c265dd63748cb93001ab8309f386 { 'aliquot_tag': 'ALQ_86e17a1f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } C3L-03743.RNA-Seq.transcriptome.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal CPT0264180009 9daa12a8-2b13-4401-9f60-9738260ff438.rna_seq.transcriptome.gdc_realn.bam 11821138286 BAM transcriptome harmonized CPTAC3 7c8e13c0-8604-4d55-a56f-0a95cca0240e e8460cc79f02f2e35dd6e6c2ea92a5b9 { 'aliquot_tag': 'ALQ_86e17a1f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03743.RNA-Seq.transcriptome.T.hg38 C3L-03743 PDA RNA-Seq tumor CPT0264150006 a115123a-e10d-4f46-b069-9bd57e29d93b.rna_seq.transcriptome.gdc_realn.bam 11902401758 BAM transcriptome harmonized CPTAC3 d1a2678d-5d08-4045-b7dc-f1f11a90c064 ce8467c8ffa23d3f3bd687562f317d2a { 'aliquot_tag': 'ALQ_eecea33f', 'gdc_sample_type': 'Primary Tumor' } C3L-03743.Targeted.T C3L-03743 PDA Targeted Sequencing tumor CPT0264150009 CPT0264150009.CustomSelection.RP-1303.PDO-18786.bam 5369962012 BAM aligned CPTAC3 0a8b2187-dd03-4f75-bf7a-69faf151aebd 17d238a62a2a4f1b2e19b63c37dbe262 { 'aliquot_tag': 'ALQ_7e71beae', 'gdc_sample_type': 'Primary Tumor' } @@ -14090,9 +14972,9 @@ C3L-03744.MethArray.Red.T C3L-03744 GBM Methylation Array tumor CPT0216920011 20 C3L-03744.miRNA-Seq.T C3L-03744 GBM miRNA-Seq tumor CPT0216920018 190206_UNC31-K00269_0191_AH2WY5BBXY_GTGAAA_S30_L002_R1_001.unaln.bam 226411237 BAM unaligned CPTAC3 b7de4c30-15fa-4077-a781-789517a2befe 3ba869b4f613320eac770eb74a8a900b { 'aliquot_tag': 'ALQ_d344f934', 'gdc_sample_type': 'Primary Tumor' } C3L-03744.miRNA-Seq.T.hg38 C3L-03744 GBM miRNA-Seq tumor CPT0216920018 2c396bc8-3c21-45a5-b729-c99ed50f5d16_mirnaseq_gdc_realn.bam 249307601 BAM harmonized CPTAC3 f3a74518-cb55-435b-a6d1-f7a41de5e1f5 5bc43ded9df34fd94ffe1a01e5eaac7b { 'aliquot_tag': 'ALQ_d344f934', 'gdc_sample_type': 'Primary Tumor' } C3L-03744.RNA-Seq.chimeric.T.hg38 C3L-03744 GBM RNA-Seq tumor CPT0216920018 02383b35-4baa-4875-9127-fcdd2707977c.rna_seq.chimeric.gdc_realn.bam 66303586 BAM chimeric harmonized CPTAC3 75205d0a-44e2-4312-a319-54aa959dcb0a 5fb6517108070175a9cafef191230706 { 'aliquot_tag': 'ALQ_d344f934', 'gdc_sample_type': 'Primary Tumor' } -C3L-03744.RNA-Seq.genomic.T.hg38 C3L-03744 GBM RNA-Seq tumor CPT0216920018 02383b35-4baa-4875-9127-fcdd2707977c.rna_seq.genomic.gdc_realn.bam 10476268031 BAM genomic harmonized CPTAC3 051552fb-dd75-489d-9572-56e726e25468 70b9deb829ebe2f11d7f57be78040108 { 'aliquot_tag': 'ALQ_d344f934', 'gdc_sample_type': 'Primary Tumor' } -C3L-03744.RNA-Seq.R1_L001.T C3L-03744 GBM RNA-Seq tumor CPT0216920018 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4858139330 FASTQ R1_L001 unaligned CPTAC3 035f8110-bb22-4229-9d3b-0dd4da238606 29edd6ed04384f8a45d1011f681794b7 { 'aliquot_tag': 'ALQ_d344f934', 'gdc_sample_type': 'Primary Tumor' } -C3L-03744.RNA-Seq.R2_L001.T C3L-03744 GBM RNA-Seq tumor CPT0216920018 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 5409623564 FASTQ R2_L001 unaligned CPTAC3 42993232-1d7f-4def-9b3a-811428825733 c77abbcfdcb06f7b365d1a373582519b { 'aliquot_tag': 'ALQ_d344f934', 'gdc_sample_type': 'Primary Tumor' } +C3L-03744.RNA-Seq.genomic.T.hg38 C3L-03744 GBM RNA-Seq tumor CPT0216920018 02383b35-4baa-4875-9127-fcdd2707977c.rna_seq.genomic.gdc_realn.bam 10476268031 BAM genomic harmonized CPTAC3 9bfda417-45a0-47a3-bbd3-bc1d6c576a5f 70b9deb829ebe2f11d7f57be78040108 { 'aliquot_tag': 'ALQ_d344f934', 'gdc_sample_type': 'Primary Tumor' } +C3L-03744.RNA-Seq.R1_L001.T C3L-03744 GBM RNA-Seq tumor CPT0216920018 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4858139330 FASTQ R1_L001 unaligned CPTAC3 035f8110-bb22-4229-9d3b-0dd4da238606 29edd6ed04384f8a45d1011f681794b7 { 'aliquot_tag': 'ALQ_d344f934', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-03744.RNA-Seq.R2_L001.T C3L-03744 GBM RNA-Seq tumor CPT0216920018 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 5409623564 FASTQ R2_L001 unaligned CPTAC3 42993232-1d7f-4def-9b3a-811428825733 c77abbcfdcb06f7b365d1a373582519b { 'aliquot_tag': 'ALQ_d344f934', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3L-03744.RNA-Seq.transcriptome.T.hg38 C3L-03744 GBM RNA-Seq tumor CPT0216920018 02383b35-4baa-4875-9127-fcdd2707977c.rna_seq.transcriptome.gdc_realn.bam 11593582703 BAM transcriptome harmonized CPTAC3 27434d76-9d24-4197-833e-8c23ec115083 abfc8c1f67cb965de48bfd23bf85070a { 'aliquot_tag': 'ALQ_d344f934', 'gdc_sample_type': 'Primary Tumor' } C3L-03744.WGS.N C3L-03744 GBM WGS blood_normal CPT0217940002 CPT0217940002.WholeGenome.RP-1303.bam 52411466113 BAM aligned CPTAC3 14d128b3-9403-40f4-870a-38bcad05e52d 7cc12f1884ae0af27f38036ad7fe6600 { 'aliquot_tag': 'ALQ_3bddf7f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03744.WGS.N.hg38 C3L-03744 GBM WGS blood_normal CPT0217940002 3eb7a3ab-e27d-4b2e-b2da-35e3109a3bca_wgs_gdc_realn.bam 76421878020 BAM harmonized CPTAC3 28786672-2983-417e-9c3f-32b2a8e7e114 be48f5ea8e14ec82a0cc0274fe0db4fc { 'aliquot_tag': 'ALQ_3bddf7f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14106,11 +14988,11 @@ C3L-03747.MethArray.Green.T C3L-03747 GBM Methylation Array tumor CPT0217000007 C3L-03747.MethArray.Red.T C3L-03747 GBM Methylation Array tumor CPT0217000007 203219650003_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 35fc7daa-b47d-4e94-a84d-6a0ca19ea63a 8753daf45c4870c7c0d7576143d2f005 { 'aliquot_tag': 'ALQ_a158dcf8', 'gdc_sample_type': 'Primary Tumor' } C3L-03747.miRNA-Seq.T C3L-03747 GBM miRNA-Seq tumor CPT0217000010 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L008_R1_001.unaln.bam 320312897 BAM unaligned CPTAC3 7f8f5031-f0e4-48c8-a165-2711ddb05ac8 b7aca08371ee32fef62c4eb069bfb7d3 { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor' } C3L-03747.miRNA-Seq.T.hg38 C3L-03747 GBM miRNA-Seq tumor CPT0217000010 842a216e-1e11-4a5e-a86b-e487872b6620_mirnaseq_gdc_realn.bam 373730804 BAM harmonized CPTAC3 fb7abda3-db8a-4d23-a40c-446af174df59 ad731a4793b9896b8a131f7b1f15eb02 { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03747.RNA-Seq.chimeric.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 03f2ca65-9f6d-4450-9c53-fee9b8a8a662.rna_seq.chimeric.gdc_realn.bam 27580547 BAM chimeric harmonized CPTAC3 bcb62ed4-9a68-4085-aed3-5644651b709d ed2f03253ba57202d3cbbf390db5d8d5 { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03747.RNA-Seq.genomic.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 03f2ca65-9f6d-4450-9c53-fee9b8a8a662.rna_seq.genomic.gdc_realn.bam 8270710879 BAM genomic harmonized CPTAC3 ac96bffb-df1f-4440-a00e-ac39ffacb598 09c2be5ae4820e937c5c79ac3bab5dd4 { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03747.RNA-Seq.R1_L006.T C3L-03747 GBM RNA-Seq tumor CPT0217000010 180918_UNC31-K00269_0152_AHWNJTBBXX_GGCTAC_S8_L006_R1_001.fastq.gz 3582139637 FASTQ R1_L006 unaligned CPTAC3 a901792d-b393-486f-bc02-850fb27a7f25 8826e2068168c0ecf41418e2c2737f24 { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03747.RNA-Seq.R2_L006.T C3L-03747 GBM RNA-Seq tumor CPT0217000010 180918_UNC31-K00269_0152_AHWNJTBBXX_GGCTAC_S8_L006_R2_001.fastq.gz 3910029087 FASTQ R2_L006 unaligned CPTAC3 883fce4d-a898-4223-9001-b7d58f416fbc 0d5943092e039c31960eec72cfec063b { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03747.RNA-Seq.transcriptome.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 03f2ca65-9f6d-4450-9c53-fee9b8a8a662.rna_seq.transcriptome.gdc_realn.bam 9520121735 BAM transcriptome harmonized CPTAC3 83befb26-3a05-4f45-ab22-7ea38fc9f098 b9a2a0c910083b866cff2706e399991c { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor' } +C3L-03747.RNA-Seq.chimeric.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 9fb1d287-70a2-4986-abdf-660fee82cf62.rna_seq.chimeric.gdc_realn.bam 27567734 BAM chimeric harmonized CPTAC3 fc8cb01a-0022-4afe-b78b-09e2586031a7 15d293b8f5e94ce312598c1422b0ac1a { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor' } +C3L-03747.RNA-Seq.genomic.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 9fb1d287-70a2-4986-abdf-660fee82cf62.rna_seq.genomic.gdc_realn.bam 8271693915 BAM genomic harmonized CPTAC3 7fb6de1b-c78d-4c2d-9853-2485033cdb0b 1cb92cb41b64bda53de96eba96226fc1 { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor' } +C3L-03747.RNA-Seq.R1_L006.T C3L-03747 GBM RNA-Seq tumor CPT0217000010 180918_UNC31-K00269_0152_AHWNJTBBXX_GGCTAC_S8_L006_R1_001.fastq.gz 3582139637 FASTQ R1_L006 unaligned CPTAC3 a901792d-b393-486f-bc02-850fb27a7f25 8826e2068168c0ecf41418e2c2737f24 { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03747.RNA-Seq.R2_L006.T C3L-03747 GBM RNA-Seq tumor CPT0217000010 180918_UNC31-K00269_0152_AHWNJTBBXX_GGCTAC_S8_L006_R2_001.fastq.gz 3910029087 FASTQ R2_L006 unaligned CPTAC3 883fce4d-a898-4223-9001-b7d58f416fbc 0d5943092e039c31960eec72cfec063b { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-03747.RNA-Seq.transcriptome.T.hg38 C3L-03747 GBM RNA-Seq tumor CPT0217000010 9fb1d287-70a2-4986-abdf-660fee82cf62.rna_seq.transcriptome.gdc_realn.bam 10741855723 BAM transcriptome harmonized CPTAC3 79b77ade-a6aa-472c-8287-ec15ef5a5f78 e448a28a2dab91176303eda64bfe9cac { 'aliquot_tag': 'ALQ_2627781a', 'gdc_sample_type': 'Primary Tumor' } C3L-03747.WGS.N C3L-03747 GBM WGS blood_normal CPT0217980002 CPT0217980002.WholeGenome.RP-1303.bam 58431032661 BAM aligned CPTAC3 669b9a17-1536-4600-8ed0-919981faa134 f91c93f09f647c87de6300e1a931b6ad { 'aliquot_tag': 'ALQ_c64d327e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03747.WGS.N.hg38 C3L-03747 GBM WGS blood_normal CPT0217980002 388c17b1-97d8-4bb5-b6e0-5fd28e966ceb_wgs_gdc_realn.bam 84283984691 BAM harmonized CPTAC3 f060af66-6986-4c8b-be4f-29950061dabb b81bcfba69849e6ab990371c9b00d570 { 'aliquot_tag': 'ALQ_c64d327e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03747.WGS.T C3L-03747 GBM WGS tumor CPT0217000007 CPT0217000007.WholeGenome.RP-1303.bam 64562644816 BAM aligned CPTAC3 d9c30c2f-9f9d-4903-8d15-831dfcd62ba9 609b70af2265950cd3f13f68deca97dd { 'aliquot_tag': 'ALQ_a158dcf8', 'gdc_sample_type': 'Primary Tumor' } @@ -14125,8 +15007,8 @@ C3L-03748.miRNA-Seq.T C3L-03748 GBM miRNA-Seq tumor CPT0217060009 190228_UNC32-K C3L-03748.miRNA-Seq.T.hg38 C3L-03748 GBM miRNA-Seq tumor CPT0217060009 36b0df4c-c20d-41ee-8154-611bd9420c34_mirnaseq_gdc_realn.bam 191577584 BAM harmonized CPTAC3 4678586a-33fa-4231-8b73-086f42a8d409 a7eae72a1037d6337275b51122ecd8e7 { 'aliquot_tag': 'ALQ_c9a0045f', 'gdc_sample_type': 'Primary Tumor' } C3L-03748.RNA-Seq.chimeric.T.hg38 C3L-03748 GBM RNA-Seq tumor CPT0217060009 2fb43643-4dc3-41b3-a299-815f5c8b0d72.rna_seq.chimeric.gdc_realn.bam 33115368 BAM chimeric harmonized CPTAC3 595892a1-5e21-4e29-a2bd-4ae6270c1e21 846deaca8db4c6d3fc0b9620523a777f { 'aliquot_tag': 'ALQ_c9a0045f', 'gdc_sample_type': 'Primary Tumor' } C3L-03748.RNA-Seq.genomic.T.hg38 C3L-03748 GBM RNA-Seq tumor CPT0217060009 2fb43643-4dc3-41b3-a299-815f5c8b0d72.rna_seq.genomic.gdc_realn.bam 8047579525 BAM genomic harmonized CPTAC3 29dadf29-9b6f-48b5-a1f4-0a7e4d6df773 8dfaa2a68f3ca27c4e580b228167d6f9 { 'aliquot_tag': 'ALQ_c9a0045f', 'gdc_sample_type': 'Primary Tumor' } -C3L-03748.RNA-Seq.R1_L006.T C3L-03748 GBM RNA-Seq tumor CPT0217060009 180918_UNC31-K00269_0152_AHWNJTBBXX_CTTGTA_S7_L006_R1_001.fastq.gz 3796424609 FASTQ R1_L006 unaligned CPTAC3 f45eae70-fb91-4be8-b800-b75f57fad8c5 bb4429ba85efbb77869321ab2f6e08ea { 'aliquot_tag': 'ALQ_c9a0045f', 'gdc_sample_type': 'Primary Tumor' } -C3L-03748.RNA-Seq.R2_L006.T C3L-03748 GBM RNA-Seq tumor CPT0217060009 180918_UNC31-K00269_0152_AHWNJTBBXX_CTTGTA_S7_L006_R2_001.fastq.gz 3969682675 FASTQ R2_L006 unaligned CPTAC3 02d3fcaa-2a96-4d16-b3c8-7c95b195ea82 b0a4c84c39c3faa0404969a6c1848317 { 'aliquot_tag': 'ALQ_c9a0045f', 'gdc_sample_type': 'Primary Tumor' } +C3L-03748.RNA-Seq.R1_L006.T C3L-03748 GBM RNA-Seq tumor CPT0217060009 180918_UNC31-K00269_0152_AHWNJTBBXX_CTTGTA_S7_L006_R1_001.fastq.gz 3796424609 FASTQ R1_L006 unaligned CPTAC3 f45eae70-fb91-4be8-b800-b75f57fad8c5 bb4429ba85efbb77869321ab2f6e08ea { 'aliquot_tag': 'ALQ_c9a0045f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03748.RNA-Seq.R2_L006.T C3L-03748 GBM RNA-Seq tumor CPT0217060009 180918_UNC31-K00269_0152_AHWNJTBBXX_CTTGTA_S7_L006_R2_001.fastq.gz 3969682675 FASTQ R2_L006 unaligned CPTAC3 02d3fcaa-2a96-4d16-b3c8-7c95b195ea82 b0a4c84c39c3faa0404969a6c1848317 { 'aliquot_tag': 'ALQ_c9a0045f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3L-03748.RNA-Seq.transcriptome.T.hg38 C3L-03748 GBM RNA-Seq tumor CPT0217060009 2fb43643-4dc3-41b3-a299-815f5c8b0d72.rna_seq.transcriptome.gdc_realn.bam 11819726876 BAM transcriptome harmonized CPTAC3 145171d1-7a4f-4599-b749-350c074cb542 daa7cb35a3a8a9d16e2473e51e8737cc { 'aliquot_tag': 'ALQ_c9a0045f', 'gdc_sample_type': 'Primary Tumor' } C3L-03748.WGS.N C3L-03748 GBM WGS blood_normal CPT0218000002 CPT0218000002.WholeGenome.RP-1303.bam 57762347417 BAM aligned CPTAC3 970c43de-36e6-416f-ba5d-86278b80511c 85be68107439cada39079bf723b20973 { 'aliquot_tag': 'ALQ_277a589e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03748.WGS.N.hg38 C3L-03748 GBM WGS blood_normal CPT0218000002 cedd1569-11a3-49f4-a54c-36f18c88e15b_wgs_gdc_realn.bam 83504601495 BAM harmonized CPTAC3 ad507579-6e47-4698-aa55-5d47304df7dd ea795479d0abd0416c3e4de48866d091 { 'aliquot_tag': 'ALQ_277a589e', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14147,9 +15029,9 @@ C3L-03961.miRNA-Seq.T.hg38 C3L-03961 LSCC miRNA-Seq tumor CPT0232670009 5645a19b C3L-03961.REP_75249cf8.miRNA-Seq.T C3L-03961 LSCC miRNA-Seq tumor CPT0232640009 190508_UNC31-K00269_0215_BH7FYKBBXY_TATAAT_S44_L002_R1_001.unaln.bam 226095721 BAM unaligned CPTAC3 740d37e8-f7a4-47ee-91ac-9981cc53682b 46161bbb7cd966c458cfaed2ec2cddae { 'aliquot_tag': 'REP_75249cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3L-03961.REP_75249cf8.miRNA-Seq.T.hg38 C3L-03961 LSCC miRNA-Seq tumor CPT0232640009 85d5ed0a-712a-4eb8-be3b-2eb91d8c577e_mirnaseq_gdc_realn.bam 257204134 BAM harmonized CPTAC3 86f70ae8-27b8-4c45-a417-338741ebf733 7a1965c3dbc82fc0bb494d6d65b61fb0 { 'aliquot_tag': 'REP_75249cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3L-03961.REP_75249cf8.RNA-Seq.chimeric.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232640009 f9836c75-e32e-4c24-acd6-c41e55711cff.rna_seq.chimeric.gdc_realn.bam 32035473 BAM chimeric harmonized CPTAC3 69b01779-3522-46f1-9eea-5d362426a306 409fcaee29a61157e728362716dcd02c { 'aliquot_tag': 'REP_75249cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3L-03961.REP_75249cf8.RNA-Seq.genomic.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232640009 f9836c75-e32e-4c24-acd6-c41e55711cff.rna_seq.genomic.gdc_realn.bam 8245589179 BAM genomic harmonized CPTAC3 b4601d95-9f70-44b9-93a5-44a37084b5d4 cdf66b3ee672bac718951dc5394a4ceb { 'aliquot_tag': 'REP_75249cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3L-03961.REP_75249cf8.RNA-Seq.R1_L007.T C3L-03961 LSCC RNA-Seq tumor CPT0232640009 190501_UNC31-K00269_0213_BH5JYFBBXY_GGAGCGTC-GTCCGTGC_S26_L007_R1_001.fastq.gz 3927636537 FASTQ R1_L007 unaligned CPTAC3 ba4d2ef4-56f6-4f5b-a4b8-994751624d3d 2ed32e0673882760b3c399b8c17f1f53 { 'aliquot_tag': 'REP_75249cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3L-03961.REP_75249cf8.RNA-Seq.R2_L007.T C3L-03961 LSCC RNA-Seq tumor CPT0232640009 190501_UNC31-K00269_0213_BH5JYFBBXY_GGAGCGTC-GTCCGTGC_S26_L007_R2_001.fastq.gz 4480904348 FASTQ R2_L007 unaligned CPTAC3 b1cb4e71-5736-4e37-9529-47023207e048 1b639ead56f342c407ea3390b3c0f6a1 { 'aliquot_tag': 'REP_75249cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3L-03961.REP_75249cf8.RNA-Seq.genomic.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232640009 f9836c75-e32e-4c24-acd6-c41e55711cff.rna_seq.genomic.gdc_realn.bam 8245589179 BAM genomic harmonized CPTAC3 dc7401ba-cd0c-418a-9b7d-cb3d20011f82 cdf66b3ee672bac718951dc5394a4ceb { 'aliquot_tag': 'REP_75249cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3L-03961.REP_75249cf8.RNA-Seq.R1_L007.T C3L-03961 LSCC RNA-Seq tumor CPT0232640009 190501_UNC31-K00269_0213_BH5JYFBBXY_GGAGCGTC-GTCCGTGC_S26_L007_R1_001.fastq.gz 3927636537 FASTQ R1_L007 unaligned CPTAC3 ba4d2ef4-56f6-4f5b-a4b8-994751624d3d 2ed32e0673882760b3c399b8c17f1f53 { 'aliquot_tag': 'REP_75249cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R1', 'lane': 'L007' } +C3L-03961.REP_75249cf8.RNA-Seq.R2_L007.T C3L-03961 LSCC RNA-Seq tumor CPT0232640009 190501_UNC31-K00269_0213_BH5JYFBBXY_GGAGCGTC-GTCCGTGC_S26_L007_R2_001.fastq.gz 4480904348 FASTQ R2_L007 unaligned CPTAC3 b1cb4e71-5736-4e37-9529-47023207e048 1b639ead56f342c407ea3390b3c0f6a1 { 'aliquot_tag': 'REP_75249cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R2', 'lane': 'L007' } C3L-03961.REP_75249cf8.RNA-Seq.transcriptome.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232640009 f9836c75-e32e-4c24-acd6-c41e55711cff.rna_seq.transcriptome.gdc_realn.bam 10334044777 BAM transcriptome harmonized CPTAC3 29767c57-aefe-4cb0-91d9-0e2308684fa0 0f312a4fc007287c5cb73d264038e4f4 { 'aliquot_tag': 'REP_75249cf8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3L-03961.REP_e59b8169.MethArray.Green.T C3L-03961 LSCC Methylation Array tumor CPT0232640006 203561620008_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 3e7670e5-a1b6-4311-b9f9-66c0888e11e6 81b7f14f5f8037cf8b60a009a109fca4 { 'aliquot_tag': 'REP_e59b8169', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } C3L-03961.REP_e59b8169.MethArray.Red.T C3L-03961 LSCC Methylation Array tumor CPT0232640006 203561620008_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 f57df523-6bda-435b-9771-0e640833c40b a8697fa7694bb0c41aa7586142eacd0f { 'aliquot_tag': 'REP_e59b8169', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } @@ -14159,12 +15041,12 @@ C3L-03961.REP_e59b8169.WXS.T C3L-03961 LSCC WXS tumor CPT0232640006 CPT023264000 C3L-03961.REP_e59b8169.WXS.T.hg38 C3L-03961 LSCC WXS tumor CPT0232640006 3610bec5-9fcf-4587-8898-7af65b5599ce_wxs_gdc_realn.bam 35196222802 BAM harmonized CPTAC3 dfaf297d-c282-4eeb-8e2c-9f67d9c13b01 d88e70bf9ecb351572d149d7982d5046 { 'aliquot_tag': 'REP_e59b8169', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } C3L-03961.RNA-Seq.chimeric.A.hg38 C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 e31abc00-7e3f-48b5-81e3-28aa7c2ca8f3.rna_seq.chimeric.gdc_realn.bam 119727443 BAM chimeric harmonized CPTAC3 ca8d6c8d-14ce-4750-92a7-084197b1b97a ca9e6e5446bc571dd5ffcded727f5083 { 'aliquot_tag': 'ALQ_8db45849', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03961.RNA-Seq.chimeric.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232670009 54d7da4f-61b3-463a-9520-ad91fa54ee3c.rna_seq.chimeric.gdc_realn.bam 165584581 BAM chimeric harmonized CPTAC3 11aa20e3-e67a-40b6-9617-22dc2b18e457 95851d7592704914509af90652a265c8 { 'aliquot_tag': 'ALQ_3284e628', 'gdc_sample_type': 'Primary Tumor' } -C3L-03961.RNA-Seq.genomic.A.hg38 C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 e31abc00-7e3f-48b5-81e3-28aa7c2ca8f3.rna_seq.genomic.gdc_realn.bam 9149910418 BAM genomic harmonized CPTAC3 8b455dd6-ee20-4884-82e0-8460d5c01327 9a72ccf39ebfef85e91420783bd71ca3 { 'aliquot_tag': 'ALQ_8db45849', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03961.RNA-Seq.genomic.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232670009 54d7da4f-61b3-463a-9520-ad91fa54ee3c.rna_seq.genomic.gdc_realn.bam 8970931712 BAM genomic harmonized CPTAC3 102adbda-763c-4ebb-b322-786e2a219d0d 452937303ab80ec6dd023e5d9d845499 { 'aliquot_tag': 'ALQ_3284e628', 'gdc_sample_type': 'Primary Tumor' } -C3L-03961.RNA-Seq.R1_L002.T C3L-03961 LSCC RNA-Seq tumor CPT0232670009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L002_R1_001.fastq.gz 4028566384 FASTQ R1_L002 unaligned CPTAC3 0fb41a04-a113-43f8-bf41-3ebfeaa16b15 b9fbf8698eed600c4f151391333fd93b { 'aliquot_tag': 'ALQ_3284e628', 'gdc_sample_type': 'Primary Tumor' } -C3L-03961.RNA-Seq.R1_L007.A C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L007_R1_001.fastq.gz 4461119091 FASTQ R1_L007 unaligned CPTAC3 f05b42a3-d863-44c6-977b-2b06cd34fc19 d90ed3d560552ef8eca3e6e10e39fa72 { 'aliquot_tag': 'ALQ_8db45849', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03961.RNA-Seq.R2_L002.T C3L-03961 LSCC RNA-Seq tumor CPT0232670009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L002_R2_001.fastq.gz 4378573275 FASTQ R2_L002 unaligned CPTAC3 52c04f81-ce8a-4377-bfd3-4c4bb0c2400a d28049aa8729a0249fafde2c80550945 { 'aliquot_tag': 'ALQ_3284e628', 'gdc_sample_type': 'Primary Tumor' } -C3L-03961.RNA-Seq.R2_L007.A C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L007_R2_001.fastq.gz 4968859911 FASTQ R2_L007 unaligned CPTAC3 21c373d0-fde0-495e-8052-71de8db49d16 d2cbec6e154a268ecaf742ea9dd2fb37 { 'aliquot_tag': 'ALQ_8db45849', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03961.RNA-Seq.genomic.A.hg38 C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 e31abc00-7e3f-48b5-81e3-28aa7c2ca8f3.rna_seq.genomic.gdc_realn.bam 9149910418 BAM genomic harmonized CPTAC3 34fa5c6a-5419-4487-a11a-b0786970d91e 9a72ccf39ebfef85e91420783bd71ca3 { 'aliquot_tag': 'ALQ_8db45849', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03961.RNA-Seq.genomic.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232670009 54d7da4f-61b3-463a-9520-ad91fa54ee3c.rna_seq.genomic.gdc_realn.bam 8970931712 BAM genomic harmonized CPTAC3 3c20c47a-db1f-4212-b72f-e549e6635ada 452937303ab80ec6dd023e5d9d845499 { 'aliquot_tag': 'ALQ_3284e628', 'gdc_sample_type': 'Primary Tumor' } +C3L-03961.RNA-Seq.R1_L002.T C3L-03961 LSCC RNA-Seq tumor CPT0232670009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L002_R1_001.fastq.gz 4028566384 FASTQ R1_L002 unaligned CPTAC3 0fb41a04-a113-43f8-bf41-3ebfeaa16b15 b9fbf8698eed600c4f151391333fd93b { 'aliquot_tag': 'ALQ_3284e628', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-03961.RNA-Seq.R1_L007.A C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L007_R1_001.fastq.gz 4461119091 FASTQ R1_L007 unaligned CPTAC3 f05b42a3-d863-44c6-977b-2b06cd34fc19 d90ed3d560552ef8eca3e6e10e39fa72 { 'aliquot_tag': 'ALQ_8db45849', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-03961.RNA-Seq.R2_L002.T C3L-03961 LSCC RNA-Seq tumor CPT0232670009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L002_R2_001.fastq.gz 4378573275 FASTQ R2_L002 unaligned CPTAC3 52c04f81-ce8a-4377-bfd3-4c4bb0c2400a d28049aa8729a0249fafde2c80550945 { 'aliquot_tag': 'ALQ_3284e628', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-03961.RNA-Seq.R2_L007.A C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L007_R2_001.fastq.gz 4968859911 FASTQ R2_L007 unaligned CPTAC3 21c373d0-fde0-495e-8052-71de8db49d16 d2cbec6e154a268ecaf742ea9dd2fb37 { 'aliquot_tag': 'ALQ_8db45849', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-03961.RNA-Seq.transcriptome.A.hg38 C3L-03961 LSCC RNA-Seq tissue_normal CPT0232690009 e31abc00-7e3f-48b5-81e3-28aa7c2ca8f3.rna_seq.transcriptome.gdc_realn.bam 10497272515 BAM transcriptome harmonized CPTAC3 8ab77529-a285-4b82-9f7d-3bee62251696 2fd79f11256f1f23cf9419dbacf5e4cd { 'aliquot_tag': 'ALQ_8db45849', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03961.RNA-Seq.transcriptome.T.hg38 C3L-03961 LSCC RNA-Seq tumor CPT0232670009 54d7da4f-61b3-463a-9520-ad91fa54ee3c.rna_seq.transcriptome.gdc_realn.bam 9202700260 BAM transcriptome harmonized CPTAC3 54fe5f8f-26d4-4aa8-9e31-5b6491d1fd8f a03c50afe787b3e30b5eb917c28e29a2 { 'aliquot_tag': 'ALQ_3284e628', 'gdc_sample_type': 'Primary Tumor' } C3L-03961.WGS.N C3L-03961 LSCC WGS blood_normal CPT0232790002 CPT0232790002.WholeGenome.RP-1303.bam 56167827193 BAM aligned CPTAC3 544d8452-b929-4ccf-8549-cc6e4fd538af f94dd472492a16e9343ed5fae782e265 { 'aliquot_tag': 'ALQ_d13a5264', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14189,10 +15071,10 @@ C3L-03962.RNA-Seq.chimeric.A.hg38 C3L-03962 LSCC RNA-Seq tissue_normal CPT023316 C3L-03962.RNA-Seq.chimeric.T.hg38 C3L-03962 LSCC RNA-Seq tumor CPT0233120013 e7a08f4b-ce10-476d-bfe4-0153b86f8dfd.rna_seq.chimeric.gdc_realn.bam 44312940 BAM chimeric harmonized CPTAC3 b84d9f1d-51ba-4320-88af-a9d1f4a538ab 0537a56964ee69e7c4f9a350100a098d { 'aliquot_tag': 'ALQ_b8d88a0b', 'gdc_sample_type': 'Primary Tumor' } C3L-03962.RNA-Seq.genomic.A.hg38 C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 bd775da1-ec2a-49ea-8f62-264ab71f02c8.rna_seq.genomic.gdc_realn.bam 8794069178 BAM genomic harmonized CPTAC3 90f800e5-a6e6-4d5b-9a15-c97d197fe0c5 f304e56f3c919490b385fe0f3ad8a916 { 'aliquot_tag': 'ALQ_b496f494', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03962.RNA-Seq.genomic.T.hg38 C3L-03962 LSCC RNA-Seq tumor CPT0233120013 e7a08f4b-ce10-476d-bfe4-0153b86f8dfd.rna_seq.genomic.gdc_realn.bam 7792828844 BAM genomic harmonized CPTAC3 d79541eb-5118-413f-81b2-e897f48a6b4d bee78697c8d571a4366af45b89e01ce2 { 'aliquot_tag': 'ALQ_b8d88a0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03962.RNA-Seq.R1_L003.T C3L-03962 LSCC RNA-Seq tumor CPT0233120013 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L003_R1_001.fastq.gz 3676621657 FASTQ R1_L003 unaligned CPTAC3 5e947edc-8cd1-4c9f-8b71-98f9ea49486b 7e8a42bbd284dcee8b347b26af635c69 { 'aliquot_tag': 'ALQ_b8d88a0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03962.RNA-Seq.R1_L007.A C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L007_R1_001.fastq.gz 4038869253 FASTQ R1_L007 unaligned CPTAC3 52fe8d29-0a32-48e6-8eb8-6a211ad92dd2 6b434fdc241c5884367468746843bcb8 { 'aliquot_tag': 'ALQ_b496f494', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03962.RNA-Seq.R2_L003.T C3L-03962 LSCC RNA-Seq tumor CPT0233120013 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L003_R2_001.fastq.gz 4012712752 FASTQ R2_L003 unaligned CPTAC3 d167e9a0-245c-4a57-86c8-4ca980bcbf85 d423379e5c71af8a1839979c59da7165 { 'aliquot_tag': 'ALQ_b8d88a0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-03962.RNA-Seq.R2_L007.A C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L007_R2_001.fastq.gz 4676819767 FASTQ R2_L007 unaligned CPTAC3 2dc6445a-ed6b-4fbf-a422-ba9160d8b4cb 8c2ff5d70b37643dd4c14ed538d7823f { 'aliquot_tag': 'ALQ_b496f494', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03962.RNA-Seq.R1_L003.T C3L-03962 LSCC RNA-Seq tumor CPT0233120013 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L003_R1_001.fastq.gz 3676621657 FASTQ R1_L003 unaligned CPTAC3 5e947edc-8cd1-4c9f-8b71-98f9ea49486b 7e8a42bbd284dcee8b347b26af635c69 { 'aliquot_tag': 'ALQ_b8d88a0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-03962.RNA-Seq.R1_L007.A C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L007_R1_001.fastq.gz 4038869253 FASTQ R1_L007 unaligned CPTAC3 52fe8d29-0a32-48e6-8eb8-6a211ad92dd2 6b434fdc241c5884367468746843bcb8 { 'aliquot_tag': 'ALQ_b496f494', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-03962.RNA-Seq.R2_L003.T C3L-03962 LSCC RNA-Seq tumor CPT0233120013 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L003_R2_001.fastq.gz 4012712752 FASTQ R2_L003 unaligned CPTAC3 d167e9a0-245c-4a57-86c8-4ca980bcbf85 d423379e5c71af8a1839979c59da7165 { 'aliquot_tag': 'ALQ_b8d88a0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-03962.RNA-Seq.R2_L007.A C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L007_R2_001.fastq.gz 4676819767 FASTQ R2_L007 unaligned CPTAC3 2dc6445a-ed6b-4fbf-a422-ba9160d8b4cb 8c2ff5d70b37643dd4c14ed538d7823f { 'aliquot_tag': 'ALQ_b496f494', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-03962.RNA-Seq.transcriptome.A.hg38 C3L-03962 LSCC RNA-Seq tissue_normal CPT0233160009 bd775da1-ec2a-49ea-8f62-264ab71f02c8.rna_seq.transcriptome.gdc_realn.bam 9320059759 BAM transcriptome harmonized CPTAC3 30227a44-bdf4-4f8a-b2bf-b099a6f0fff0 a4b24fec49b7a1660011bd2e815236f1 { 'aliquot_tag': 'ALQ_b496f494', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03962.RNA-Seq.transcriptome.T.hg38 C3L-03962 LSCC RNA-Seq tumor CPT0233120013 e7a08f4b-ce10-476d-bfe4-0153b86f8dfd.rna_seq.transcriptome.gdc_realn.bam 9064182470 BAM transcriptome harmonized CPTAC3 c408b2f2-aa85-43c8-8bb5-455b49ebb9cd 4d5495129ec2cd28e15b2c6204f267bd { 'aliquot_tag': 'ALQ_b8d88a0b', 'gdc_sample_type': 'Primary Tumor' } C3L-03962.WGS.N C3L-03962 LSCC WGS blood_normal CPT0233260002 CPT0233260002.WholeGenome.RP-1303.bam 70978416034 BAM aligned CPTAC3 22892109-211c-4f97-860b-e36236fbc2fd 40fefb8356374a18a6e5779a2362f9c8 { 'aliquot_tag': 'ALQ_a5d05fb2', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14215,12 +15097,12 @@ C3L-03963.miRNA-Seq.T C3L-03963 LSCC miRNA-Seq tumor CPT0227400009 190206_UNC31- C3L-03963.miRNA-Seq.T.hg38 C3L-03963 LSCC miRNA-Seq tumor CPT0227400009 34bfc20e-cf76-4d61-8605-399ebff9a296_mirnaseq_gdc_realn.bam 195655805 BAM harmonized CPTAC3 8835a0ec-d3fb-47b6-bb32-324cfa3f63ab ddabc2c70a7124ad1d0ad50daa65f877 { 'aliquot_tag': 'ALQ_53feb40a', 'gdc_sample_type': 'Primary Tumor' } C3L-03963.RNA-Seq.chimeric.A.hg38 C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 c21fc2b8-cec4-4bd7-90d6-0a40402fa06a.rna_seq.chimeric.gdc_realn.bam 109579574 BAM chimeric harmonized CPTAC3 041c6eca-5af6-4f36-a8a0-47c7d0cc15c7 481da5604052e82341903ba2161028c7 { 'aliquot_tag': 'ALQ_293ee76a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03963.RNA-Seq.chimeric.T.hg38 C3L-03963 LSCC RNA-Seq tumor CPT0227400009 b8cc9b0c-d4f2-4676-bf7e-b17f753cefe4.rna_seq.chimeric.gdc_realn.bam 70141974 BAM chimeric harmonized CPTAC3 a6c4d25c-6b8b-47c9-b057-9c950f23bde6 8dccca4bd8ab0f6ebf6015a7eb8b81c7 { 'aliquot_tag': 'ALQ_53feb40a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03963.RNA-Seq.genomic.A.hg38 C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 c21fc2b8-cec4-4bd7-90d6-0a40402fa06a.rna_seq.genomic.gdc_realn.bam 6637014987 BAM genomic harmonized CPTAC3 c499bd50-ae6d-496f-aeb9-8c2b3ae3509a 62489dee86e759925a997f90e3f99a4c { 'aliquot_tag': 'ALQ_293ee76a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03963.RNA-Seq.genomic.T.hg38 C3L-03963 LSCC RNA-Seq tumor CPT0227400009 b8cc9b0c-d4f2-4676-bf7e-b17f753cefe4.rna_seq.genomic.gdc_realn.bam 9266692984 BAM genomic harmonized CPTAC3 bafff13c-ddd3-4f5a-9d51-5abda29aedb8 f9085980f61fce8e9117812de98be9c3 { 'aliquot_tag': 'ALQ_53feb40a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03963.RNA-Seq.R1_L002.A C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 190219_UNC31-K00269_0194_AH3V53BBXY_CGTACG_S7_L002_R1_001.fastq.gz 3045025236 FASTQ R1_L002 unaligned CPTAC3 50c2192e-d98a-42cf-817a-a10223b6102a b71ab01e3b9e5d8bac28053f73277dd7 { 'aliquot_tag': 'ALQ_293ee76a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03963.RNA-Seq.R1_L008.T C3L-03963 LSCC RNA-Seq tumor CPT0227400009 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L008_R1_001.fastq.gz 3704752687 FASTQ R1_L008 unaligned CPTAC3 637c9e1d-784f-4821-8b09-e98d39848dd9 69e612d357977ffbe1cc63689105d72f { 'aliquot_tag': 'ALQ_53feb40a', 'gdc_sample_type': 'Primary Tumor' } -C3L-03963.RNA-Seq.R2_L002.A C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 190219_UNC31-K00269_0194_AH3V53BBXY_CGTACG_S7_L002_R2_001.fastq.gz 3314142862 FASTQ R2_L002 unaligned CPTAC3 6468e541-459f-4bde-9476-70d70ada41ff 88f4ed03ab73d14d110d1d9914a69969 { 'aliquot_tag': 'ALQ_293ee76a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03963.RNA-Seq.R2_L008.T C3L-03963 LSCC RNA-Seq tumor CPT0227400009 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L008_R2_001.fastq.gz 4097929870 FASTQ R2_L008 unaligned CPTAC3 b00501a5-1535-4721-8538-2f96a975ae75 c7cad77d5e685a52767e19d25442afda { 'aliquot_tag': 'ALQ_53feb40a', 'gdc_sample_type': 'Primary Tumor' } +C3L-03963.RNA-Seq.genomic.A.hg38 C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 c21fc2b8-cec4-4bd7-90d6-0a40402fa06a.rna_seq.genomic.gdc_realn.bam 6637014987 BAM genomic harmonized CPTAC3 5f754fc9-85d9-4728-997a-b2ae567e2613 62489dee86e759925a997f90e3f99a4c { 'aliquot_tag': 'ALQ_293ee76a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03963.RNA-Seq.genomic.T.hg38 C3L-03963 LSCC RNA-Seq tumor CPT0227400009 b8cc9b0c-d4f2-4676-bf7e-b17f753cefe4.rna_seq.genomic.gdc_realn.bam 9266692984 BAM genomic harmonized CPTAC3 6ceef58d-217e-4429-82b4-1fc88967f534 f9085980f61fce8e9117812de98be9c3 { 'aliquot_tag': 'ALQ_53feb40a', 'gdc_sample_type': 'Primary Tumor' } +C3L-03963.RNA-Seq.R1_L002.A C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 190219_UNC31-K00269_0194_AH3V53BBXY_CGTACG_S7_L002_R1_001.fastq.gz 3045025236 FASTQ R1_L002 unaligned CPTAC3 50c2192e-d98a-42cf-817a-a10223b6102a b71ab01e3b9e5d8bac28053f73277dd7 { 'aliquot_tag': 'ALQ_293ee76a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-03963.RNA-Seq.R1_L008.T C3L-03963 LSCC RNA-Seq tumor CPT0227400009 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L008_R1_001.fastq.gz 3704752687 FASTQ R1_L008 unaligned CPTAC3 637c9e1d-784f-4821-8b09-e98d39848dd9 69e612d357977ffbe1cc63689105d72f { 'aliquot_tag': 'ALQ_53feb40a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-03963.RNA-Seq.R2_L002.A C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 190219_UNC31-K00269_0194_AH3V53BBXY_CGTACG_S7_L002_R2_001.fastq.gz 3314142862 FASTQ R2_L002 unaligned CPTAC3 6468e541-459f-4bde-9476-70d70ada41ff 88f4ed03ab73d14d110d1d9914a69969 { 'aliquot_tag': 'ALQ_293ee76a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-03963.RNA-Seq.R2_L008.T C3L-03963 LSCC RNA-Seq tumor CPT0227400009 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L008_R2_001.fastq.gz 4097929870 FASTQ R2_L008 unaligned CPTAC3 b00501a5-1535-4721-8538-2f96a975ae75 c7cad77d5e685a52767e19d25442afda { 'aliquot_tag': 'ALQ_53feb40a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-03963.RNA-Seq.transcriptome.A.hg38 C3L-03963 LSCC RNA-Seq tissue_normal CPT0227420009 c21fc2b8-cec4-4bd7-90d6-0a40402fa06a.rna_seq.transcriptome.gdc_realn.bam 7366262123 BAM transcriptome harmonized CPTAC3 f927c4cd-bbfa-40ac-b759-75f91cb402b5 094048dd80c81479a5c88b1c1466cc0c { 'aliquot_tag': 'ALQ_293ee76a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03963.RNA-Seq.transcriptome.T.hg38 C3L-03963 LSCC RNA-Seq tumor CPT0227400009 b8cc9b0c-d4f2-4676-bf7e-b17f753cefe4.rna_seq.transcriptome.gdc_realn.bam 8254874913 BAM transcriptome harmonized CPTAC3 8faedf56-e085-4a8b-9dc8-eaa863b96573 9c4445046203da313f86668c4b9e15c2 { 'aliquot_tag': 'ALQ_53feb40a', 'gdc_sample_type': 'Primary Tumor' } C3L-03963.WGS.N C3L-03963 LSCC WGS blood_normal CPT0227530002 CPT0227530002.WholeGenome.RP-1303.bam 53665950297 BAM aligned CPTAC3 d6bd99fb-aa71-453e-b90c-5ddd455b7a14 b32e4ca62aa82fc2130dcfcffe0e5b25 { 'aliquot_tag': 'ALQ_48d0c4f7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14243,12 +15125,12 @@ C3L-03965.miRNA-Seq.T C3L-03965 LSCC miRNA-Seq tumor CPT0207210009 190206_UNC31- C3L-03965.miRNA-Seq.T.hg38 C3L-03965 LSCC miRNA-Seq tumor CPT0207210009 54ccb2b4-ba4f-4f72-b55b-d122ff139f77_mirnaseq_gdc_realn.bam 227858141 BAM harmonized CPTAC3 7d37423f-cea8-4e92-98a3-1cff3a3834f6 02e53bd8eac59db7e29fc162e9df7d0c { 'aliquot_tag': 'ALQ_fae279da', 'gdc_sample_type': 'Primary Tumor' } C3L-03965.RNA-Seq.chimeric.A.hg38 C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 40858fdc-19d2-4a31-a9d8-a402048d2c31.rna_seq.chimeric.gdc_realn.bam 220660573 BAM chimeric harmonized CPTAC3 55af1dab-b045-4e05-af3a-be3d301ad133 ffd147378aaab458173649d1d849b442 { 'aliquot_tag': 'ALQ_9fddc28b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03965.RNA-Seq.chimeric.T.hg38 C3L-03965 LSCC RNA-Seq tumor CPT0207210009 d44dc6d9-6cfa-45ca-a2da-5347ec7dcf5e.rna_seq.chimeric.gdc_realn.bam 159966732 BAM chimeric harmonized CPTAC3 e8da0699-6c2a-4c84-aaf9-8c78938ee85c ddedc5cecdee8593257a1a7945aad3e8 { 'aliquot_tag': 'ALQ_fae279da', 'gdc_sample_type': 'Primary Tumor' } -C3L-03965.RNA-Seq.genomic.A.hg38 C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 40858fdc-19d2-4a31-a9d8-a402048d2c31.rna_seq.genomic.gdc_realn.bam 8783869147 BAM genomic harmonized CPTAC3 f55fdca7-dccd-49ae-9e85-4f50f512cc4b 85a9707673402cfa2bbb4f9f22193c65 { 'aliquot_tag': 'ALQ_9fddc28b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03965.RNA-Seq.genomic.T.hg38 C3L-03965 LSCC RNA-Seq tumor CPT0207210009 d44dc6d9-6cfa-45ca-a2da-5347ec7dcf5e.rna_seq.genomic.gdc_realn.bam 10420358928 BAM genomic harmonized CPTAC3 2c622946-ad4c-4622-b4f0-c73323f77be9 bd35c0d850a6e809e00190b4c08b3b50 { 'aliquot_tag': 'ALQ_fae279da', 'gdc_sample_type': 'Primary Tumor' } -C3L-03965.RNA-Seq.R1_L002.T C3L-03965 LSCC RNA-Seq tumor CPT0207210009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L002_R1_001.fastq.gz 4793695484 FASTQ R1_L002 unaligned CPTAC3 6fcd290a-cc70-40ce-bc63-4730ea7939c9 39f7409c75ea08dddfb08f2446400573 { 'aliquot_tag': 'ALQ_fae279da', 'gdc_sample_type': 'Primary Tumor' } -C3L-03965.RNA-Seq.R1_L005.A C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 190208_UNC32-K00270_0146_BH3V2WBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 4157303846 FASTQ R1_L005 unaligned CPTAC3 0e317482-0734-4b81-939d-cf634149f0c8 f4bae6371bc7ef4297ecef30d1b0d2a6 { 'aliquot_tag': 'ALQ_9fddc28b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03965.RNA-Seq.R2_L002.T C3L-03965 LSCC RNA-Seq tumor CPT0207210009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L002_R2_001.fastq.gz 5153429353 FASTQ R2_L002 unaligned CPTAC3 b5998c3a-c80b-4fad-b796-6edc3f14ca16 3bdb433aa0254531b4b3ebb66f4c37cf { 'aliquot_tag': 'ALQ_fae279da', 'gdc_sample_type': 'Primary Tumor' } -C3L-03965.RNA-Seq.R2_L005.A C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 190208_UNC32-K00270_0146_BH3V2WBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 4554290894 FASTQ R2_L005 unaligned CPTAC3 60d87417-4be8-454b-947d-650fe39b2ef0 4aae7402b802d716b0e449ad0d48cd0a { 'aliquot_tag': 'ALQ_9fddc28b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03965.RNA-Seq.genomic.A.hg38 C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 40858fdc-19d2-4a31-a9d8-a402048d2c31.rna_seq.genomic.gdc_realn.bam 8783869147 BAM genomic harmonized CPTAC3 329d6ffe-e0f5-41d0-90c5-64adfd00ef0f 85a9707673402cfa2bbb4f9f22193c65 { 'aliquot_tag': 'ALQ_9fddc28b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03965.RNA-Seq.genomic.T.hg38 C3L-03965 LSCC RNA-Seq tumor CPT0207210009 d44dc6d9-6cfa-45ca-a2da-5347ec7dcf5e.rna_seq.genomic.gdc_realn.bam 10420358928 BAM genomic harmonized CPTAC3 35b53149-cd29-4ea8-b56a-260343450918 bd35c0d850a6e809e00190b4c08b3b50 { 'aliquot_tag': 'ALQ_fae279da', 'gdc_sample_type': 'Primary Tumor' } +C3L-03965.RNA-Seq.R1_L002.T C3L-03965 LSCC RNA-Seq tumor CPT0207210009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L002_R1_001.fastq.gz 4793695484 FASTQ R1_L002 unaligned CPTAC3 6fcd290a-cc70-40ce-bc63-4730ea7939c9 39f7409c75ea08dddfb08f2446400573 { 'aliquot_tag': 'ALQ_fae279da', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-03965.RNA-Seq.R1_L005.A C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 190208_UNC32-K00270_0146_BH3V2WBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 4157303846 FASTQ R1_L005 unaligned CPTAC3 0e317482-0734-4b81-939d-cf634149f0c8 f4bae6371bc7ef4297ecef30d1b0d2a6 { 'aliquot_tag': 'ALQ_9fddc28b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-03965.RNA-Seq.R2_L002.T C3L-03965 LSCC RNA-Seq tumor CPT0207210009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L002_R2_001.fastq.gz 5153429353 FASTQ R2_L002 unaligned CPTAC3 b5998c3a-c80b-4fad-b796-6edc3f14ca16 3bdb433aa0254531b4b3ebb66f4c37cf { 'aliquot_tag': 'ALQ_fae279da', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-03965.RNA-Seq.R2_L005.A C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 190208_UNC32-K00270_0146_BH3V2WBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 4554290894 FASTQ R2_L005 unaligned CPTAC3 60d87417-4be8-454b-947d-650fe39b2ef0 4aae7402b802d716b0e449ad0d48cd0a { 'aliquot_tag': 'ALQ_9fddc28b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3L-03965.RNA-Seq.transcriptome.A.hg38 C3L-03965 LSCC RNA-Seq tissue_normal CPT0207250006 40858fdc-19d2-4a31-a9d8-a402048d2c31.rna_seq.transcriptome.gdc_realn.bam 9427404932 BAM transcriptome harmonized CPTAC3 8d263302-132a-47ee-a7ce-6aa88d74ec27 7fc7e1156971e6d5a509e7696bf75539 { 'aliquot_tag': 'ALQ_9fddc28b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03965.RNA-Seq.transcriptome.T.hg38 C3L-03965 LSCC RNA-Seq tumor CPT0207210009 d44dc6d9-6cfa-45ca-a2da-5347ec7dcf5e.rna_seq.transcriptome.gdc_realn.bam 12514526693 BAM transcriptome harmonized CPTAC3 4fddea50-e733-4488-8402-9d66cd91c14c 8807e91ffddc0fbd51d07d3bd1fff9bb { 'aliquot_tag': 'ALQ_fae279da', 'gdc_sample_type': 'Primary Tumor' } C3L-03965.WGS.N C3L-03965 LSCC WGS blood_normal CPT0207360002 CPT0207360002.WholeGenome.RP-1303.bam 60833619609 BAM aligned CPTAC3 b0c60e5c-a492-48bd-b9a6-6a5934f852a7 0e7bed5a10a3eee8da46d40c6db4a7b8 { 'aliquot_tag': 'ALQ_144cafe7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14267,11 +15149,11 @@ C3L-03968.miRNA-Seq.T C3L-03968 GBM miRNA-Seq tumor CPT0228220009 190206_UNC31-K C3L-03968.miRNA-Seq.T.hg38 C3L-03968 GBM miRNA-Seq tumor CPT0228220009 1d6001d1-2404-405a-8db0-034f92eac251_mirnaseq_gdc_realn.bam 213955050 BAM harmonized CPTAC3 8735fa9f-4346-400c-a03c-363d930400ee aa0d8312ce1cb1d453ee42582b4fe9f2 { 'aliquot_tag': 'ALQ_92f749e', 'gdc_sample_type': 'Primary Tumor' } C3L-03968.RNA-Seq.chimeric.T.hg38 C3L-03968 GBM RNA-Seq tumor CPT0228220009 1deb3f46-cea3-4f49-925b-951eddd0ba88.rna_seq.chimeric.gdc_realn.bam 88975592 BAM chimeric harmonized CPTAC3 f7b9c081-20fd-4a76-949d-133b0d6b5d76 1ecbf3f1680dfb960a300e991e6916d2 { 'aliquot_tag': 'ALQ_92f749e', 'gdc_sample_type': 'Primary Tumor' } C3L-03968.RNA-Seq.genomic.T.hg38 C3L-03968 GBM RNA-Seq tumor CPT0228220009 1deb3f46-cea3-4f49-925b-951eddd0ba88.rna_seq.genomic.gdc_realn.bam 10165814453 BAM genomic harmonized CPTAC3 5d9c6d5d-2afd-42f2-91da-d6a763125634 56fe62c726c0eecf522244100f02a991 { 'aliquot_tag': 'ALQ_92f749e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03968.RNA-Seq.R1_L008.T C3L-03968 GBM RNA-Seq tumor CPT0228220009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R1_001.fastq.gz 4636196096 FASTQ R1_L008 unaligned CPTAC3 b6017d4a-a185-48b3-be09-6924aebbd163 8903ee3b1ed5b552cd66ca11165ea149 { 'aliquot_tag': 'ALQ_92f749e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03968.RNA-Seq.R2_L008.T C3L-03968 GBM RNA-Seq tumor CPT0228220009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R2_001.fastq.gz 4944644409 FASTQ R2_L008 unaligned CPTAC3 caa46304-d90c-4d2f-b172-b917ea44d003 a2da5dd50e0722ea635db8f901eec369 { 'aliquot_tag': 'ALQ_92f749e', 'gdc_sample_type': 'Primary Tumor' } +C3L-03968.RNA-Seq.R1_L008.T C3L-03968 GBM RNA-Seq tumor CPT0228220009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R1_001.fastq.gz 4636196096 FASTQ R1_L008 unaligned CPTAC3 b6017d4a-a185-48b3-be09-6924aebbd163 8903ee3b1ed5b552cd66ca11165ea149 { 'aliquot_tag': 'ALQ_92f749e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-03968.RNA-Seq.R2_L008.T C3L-03968 GBM RNA-Seq tumor CPT0228220009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L008_R2_001.fastq.gz 4944644409 FASTQ R2_L008 unaligned CPTAC3 caa46304-d90c-4d2f-b172-b917ea44d003 a2da5dd50e0722ea635db8f901eec369 { 'aliquot_tag': 'ALQ_92f749e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-03968.RNA-Seq.transcriptome.T.hg38 C3L-03968 GBM RNA-Seq tumor CPT0228220009 1deb3f46-cea3-4f49-925b-951eddd0ba88.rna_seq.transcriptome.gdc_realn.bam 9695661736 BAM transcriptome harmonized CPTAC3 6ce14bae-b965-4554-a85b-cc38ec4891de ddb2d00c583d32918a224255f9694421 { 'aliquot_tag': 'ALQ_92f749e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03968.scRNA-Seq.R1_L003.T C3L-03968 GBM scRNA-Seq tumor CPT0228220004 20191113_WUSTL_CPT0228220004_TATGATTC-CCCACAGT-ATGCTGAA-GGATGCCG_S5_L003_R1_001.fastq.gz 12332046890 FASTQ R1_L003 unaligned CPTAC3 fde2e78c-2330-4e10-ac7b-f405d95d1a9c 252ef1d82c3093686468a861096ec187 { 'aliquot_tag': 'ALQ_779e0823', 'gdc_sample_type': 'Primary Tumor' } -C3L-03968.scRNA-Seq.R2_L003.T C3L-03968 GBM scRNA-Seq tumor CPT0228220004 20191113_WUSTL_CPT0228220004_TATGATTC-CCCACAGT-ATGCTGAA-GGATGCCG_S5_L003_R2_001.fastq.gz 27268492073 FASTQ R2_L003 unaligned CPTAC3 69a226f6-99ba-4783-a417-7cd596be4868 256d74984b78ed853d6156bde8b0370b { 'aliquot_tag': 'ALQ_779e0823', 'gdc_sample_type': 'Primary Tumor' } +C3L-03968.scRNA-Seq.R1_L003.T C3L-03968 GBM scRNA-Seq tumor CPT0228220004 20191113_WUSTL_CPT0228220004_TATGATTC-CCCACAGT-ATGCTGAA-GGATGCCG_S5_L003_R1_001.fastq.gz 12332046890 FASTQ R1_L003 unaligned CPTAC3 fde2e78c-2330-4e10-ac7b-f405d95d1a9c 252ef1d82c3093686468a861096ec187 { 'aliquot_tag': 'ALQ_779e0823', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-03968.scRNA-Seq.R2_L003.T C3L-03968 GBM scRNA-Seq tumor CPT0228220004 20191113_WUSTL_CPT0228220004_TATGATTC-CCCACAGT-ATGCTGAA-GGATGCCG_S5_L003_R2_001.fastq.gz 27268492073 FASTQ R2_L003 unaligned CPTAC3 69a226f6-99ba-4783-a417-7cd596be4868 256d74984b78ed853d6156bde8b0370b { 'aliquot_tag': 'ALQ_779e0823', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-03968.scRNA-Seq.T.hg38 C3L-03968 GBM scRNA-Seq tumor CPT0228220004 possorted_genome_bam.bam 31087850916 BAM harmonized CPTAC3 514aacd9-b0dd-47c1-b49f-3a66ca04ea13 62f12b60d0ff5f5d338b504a01628b6e { 'aliquot_tag': 'ALQ_779e0823', 'gdc_sample_type': 'Primary Tumor' } C3L-03968.WGS.N C3L-03968 GBM WGS blood_normal CPT0228320002 CPT0228320002.WholeGenome.RP-1303.bam 51775732268 BAM aligned CPTAC3 9efb45b1-b5e0-48b5-86cb-660f2dafa2e8 fdb0574beba867ef5bd393d022e8e39a { 'aliquot_tag': 'ALQ_55a17eb3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03968.WGS.N.hg38 C3L-03968 GBM WGS blood_normal CPT0228320002 8b735522-06d1-4074-adb7-0f326c2842b4_wgs_gdc_realn.bam 75690377017 BAM harmonized CPTAC3 1b49821e-bb58-4201-ae96-cb252e209018 3909b91bab18b2699192b8bfc54729c0 { 'aliquot_tag': 'ALQ_55a17eb3', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14289,16 +15171,16 @@ C3L-03969.miRNA-Seq.A C3L-03969 LUAD miRNA-Seq tissue_normal CPT0229390007 19072 C3L-03969.miRNA-Seq.A.hg38 C3L-03969 LUAD miRNA-Seq tissue_normal CPT0229390007 0858f76b-0e40-463c-a9a9-cfb7a0560939_mirnaseq_gdc_realn.bam 201013123 BAM harmonized CPTAC3 83d4b3db-39d9-4f0c-89c7-9ba2cf087b15 a87fecb8572a1741a94820e9a4b7cabd { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03969.miRNA-Seq.T C3L-03969 LUAD miRNA-Seq tumor CPT0229360010 190722_UNC31-K00269_0234_AH7VGTBBXY_CATTTT_S29_L004_R1_001.unaln.bam 226589942 BAM unaligned CPTAC3 fa109316-8c4c-401d-9e56-6879ff954e0a b7f98322c83d4a75a054580507d3a562 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor' } C3L-03969.miRNA-Seq.T.hg38 C3L-03969 LUAD miRNA-Seq tumor CPT0229360010 c90298f6-24c8-4130-bcea-4e65a6886c29_mirnaseq_gdc_realn.bam 248197645 BAM harmonized CPTAC3 5a282886-b90b-48d9-8034-8e6ad8d0f3e2 d4f6b0ee253bb81aff98fe2c0f963208 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-03969.RNA-Seq.chimeric.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 387ead53-6a82-4036-845a-28d46976b0c0.rna_seq.chimeric.gdc_realn.bam 25715900 BAM chimeric harmonized CPTAC3 45d8849c-8109-4b65-91d0-0bd086009768 20dd088b398550eb69e46451825720ff { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03969.RNA-Seq.chimeric.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 b69f0c5a-97e1-42ba-9559-31f8ae9b7deb.rna_seq.chimeric.gdc_realn.bam 32672723 BAM chimeric harmonized CPTAC3 0a2f0e9b-4cc7-46e9-933f-376c6a403b51 25d0a1f88519fa31d5d5143e653b83ef { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-03969.RNA-Seq.genomic.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 387ead53-6a82-4036-845a-28d46976b0c0.rna_seq.genomic.gdc_realn.bam 11009646793 BAM genomic harmonized CPTAC3 4695e158-7385-4347-a1ab-f1d379f331d2 a9c18dbca1660facb200966787ec712b { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03969.RNA-Seq.genomic.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 b69f0c5a-97e1-42ba-9559-31f8ae9b7deb.rna_seq.genomic.gdc_realn.bam 11720333039 BAM genomic harmonized CPTAC3 cf4e61b2-4d8b-4681-ba64-08c475df6cad 578cfdfadbc685e501c50a1dac23f436 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-03969.RNA-Seq.R1_L006.T C3L-03969 LUAD RNA-Seq tumor CPT0229360010 190604_UNC32-K00270_0177_AH7F5VBBXY_AGCCTCAT-AGTAGAGA_S21_L006_R1_001.fastq.gz 3781375419 FASTQ R1_L006 unaligned CPTAC3 43507f31-8ecf-4b74-b825-91d2d500e1c8 c63e638c315c3f693130cb7e9159f4f6 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-03969.RNA-Seq.R1_L007.A C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R1_001.fastq.gz 3773757903 FASTQ R1_L007 unaligned CPTAC3 8a354b39-5529-48f4-96a9-4d98d5bd3158 a64fe6b2a0fe835e36528218ad1c471e { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03969.RNA-Seq.R2_L006.T C3L-03969 LUAD RNA-Seq tumor CPT0229360010 190604_UNC32-K00270_0177_AH7F5VBBXY_AGCCTCAT-AGTAGAGA_S21_L006_R2_001.fastq.gz 4218090532 FASTQ R2_L006 unaligned CPTAC3 c756d39b-ac1c-4507-b3e5-e2ebfcd2b568 fceb72d7cd5210b8d0e447b527330ad6 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-03969.RNA-Seq.R2_L007.A C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R2_001.fastq.gz 4112110859 FASTQ R2_L007 unaligned CPTAC3 0592d378-f99e-40d6-814e-0d8a72167e96 0600ebb1666d6f0acb49fe7deafdb6d7 { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03969.RNA-Seq.transcriptome.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 387ead53-6a82-4036-845a-28d46976b0c0.rna_seq.transcriptome.gdc_realn.bam 6666380519 BAM transcriptome harmonized CPTAC3 528bf962-7b93-4495-a131-f551f193fb27 0f1cd79b1d69963f591b6426577eaae9 { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03969.RNA-Seq.transcriptome.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 b69f0c5a-97e1-42ba-9559-31f8ae9b7deb.rna_seq.transcriptome.gdc_realn.bam 7158039427 BAM transcriptome harmonized CPTAC3 5ea8c126-b522-4ac9-8387-5e96474ea24d 57c6fb2c59272bca872c6120332010a1 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-03969.RNA-Seq.chimeric.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 45adcc49-9c40-4590-8154-65b903224a5a.rna_seq.chimeric.gdc_realn.bam 25708444 BAM chimeric harmonized CPTAC3 68b58a5f-809b-40f3-b092-0ab7cc630cf2 a878016d727d3393c4f66eaf51feec3f { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03969.RNA-Seq.chimeric.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 c639b9d1-95f0-4853-aaa9-43b634492f51.rna_seq.chimeric.gdc_realn.bam 32681755 BAM chimeric harmonized CPTAC3 b10f7d8a-16c1-45d5-8ed1-cc88f3953316 e3d9780da13e330f23aaa10aea74bc15 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-03969.RNA-Seq.genomic.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 45adcc49-9c40-4590-8154-65b903224a5a.rna_seq.genomic.gdc_realn.bam 11010451280 BAM genomic harmonized CPTAC3 efca4d59-387f-42ac-86f0-1598c653b44a f96ae5b4a9b6f52eb3d40b669cb9d2fd { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03969.RNA-Seq.genomic.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 c639b9d1-95f0-4853-aaa9-43b634492f51.rna_seq.genomic.gdc_realn.bam 11721090046 BAM genomic harmonized CPTAC3 72edf8b4-a14d-42b1-9dc9-401fbed9bdf7 9db54b9d524b29043e4e85e9807a12e2 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-03969.RNA-Seq.R1_L006.T C3L-03969 LUAD RNA-Seq tumor CPT0229360010 190604_UNC32-K00270_0177_AH7F5VBBXY_AGCCTCAT-AGTAGAGA_S21_L006_R1_001.fastq.gz 3781375419 FASTQ R1_L006 unaligned CPTAC3 43507f31-8ecf-4b74-b825-91d2d500e1c8 c63e638c315c3f693130cb7e9159f4f6 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03969.RNA-Seq.R1_L007.A C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R1_001.fastq.gz 3773757903 FASTQ R1_L007 unaligned CPTAC3 8a354b39-5529-48f4-96a9-4d98d5bd3158 a64fe6b2a0fe835e36528218ad1c471e { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-03969.RNA-Seq.R2_L006.T C3L-03969 LUAD RNA-Seq tumor CPT0229360010 190604_UNC32-K00270_0177_AH7F5VBBXY_AGCCTCAT-AGTAGAGA_S21_L006_R2_001.fastq.gz 4218090532 FASTQ R2_L006 unaligned CPTAC3 c756d39b-ac1c-4507-b3e5-e2ebfcd2b568 fceb72d7cd5210b8d0e447b527330ad6 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-03969.RNA-Seq.R2_L007.A C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 190607_UNC32-K00270_0178_AH773TBBXY_GCCACAGG-CATGCCAT_S27_L007_R2_001.fastq.gz 4112110859 FASTQ R2_L007 unaligned CPTAC3 0592d378-f99e-40d6-814e-0d8a72167e96 0600ebb1666d6f0acb49fe7deafdb6d7 { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-03969.RNA-Seq.transcriptome.A.hg38 C3L-03969 LUAD RNA-Seq tissue_normal CPT0229390007 45adcc49-9c40-4590-8154-65b903224a5a.rna_seq.transcriptome.gdc_realn.bam 7503136161 BAM transcriptome harmonized CPTAC3 239af458-d2dd-43b5-ada0-598e5a212b07 1726b856ad8b2c9ca4eb782ba0b1d7d4 { 'aliquot_tag': 'ALQ_f46cb099', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03969.RNA-Seq.transcriptome.T.hg38 C3L-03969 LUAD RNA-Seq tumor CPT0229360010 c639b9d1-95f0-4853-aaa9-43b634492f51.rna_seq.transcriptome.gdc_realn.bam 7992063542 BAM transcriptome harmonized CPTAC3 018fc022-06c2-49ae-9ed3-101e1077bb19 33011fd7db38be99e78283440abf4380 { 'aliquot_tag': 'ALQ_f14383aa', 'gdc_sample_type': 'Primary Tumor' } C3L-03969.WGS.N C3L-03969 LUAD WGS blood_normal CPT0229500002 CPT0229500002.WholeGenome.RP-1303.bam 67687380228 BAM aligned CPTAC3 90cb5a5a-cdda-4966-976c-a106ed80c4fe 3583bd00c3bd46c62596f5821ceb41dc { 'aliquot_tag': 'ALQ_5f4fc57a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03969.WGS.N.hg38 C3L-03969 LUAD WGS blood_normal CPT0229500002 011bdc0d-8bf8-40eb-93eb-b45db054f7de_wgs_gdc_realn.bam 98596122288 BAM harmonized CPTAC3 08b27748-8515-4dca-bc85-ed1857151e25 3e7e5ccdae163f48ffe748a43d84162d { 'aliquot_tag': 'ALQ_5f4fc57a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03969.WGS.T C3L-03969 LUAD WGS tumor CPT0229360007 CPT0229360007.WholeGenome.RP-1303.bam 74136999101 BAM aligned CPTAC3 15b0b926-51da-4193-8fc5-3d096d2a24a0 c73979366c061d7fa77a6147100280d8 { 'aliquot_tag': 'ALQ_763c2748', 'gdc_sample_type': 'Primary Tumor' } @@ -14317,16 +15199,16 @@ C3L-03976.miRNA-Seq.A C3L-03976 LUAD miRNA-Seq tissue_normal CPT0231930009 19072 C3L-03976.miRNA-Seq.A.hg38 C3L-03976 LUAD miRNA-Seq tissue_normal CPT0231930009 392db083-3055-4daf-a861-0546a970291e_mirnaseq_gdc_realn.bam 224997999 BAM harmonized CPTAC3 9d93db0d-8acb-4f87-93b5-f05b256ce18e 911b3f8bbb24a7361eafd22b931444b1 { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03976.miRNA-Seq.T C3L-03976 LUAD miRNA-Seq tumor CPT0231920009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTATAC_S32_L004_R1_001.unaln.bam 211252261 BAM unaligned CPTAC3 fa7c67f7-8bfa-44f9-9980-e6fe14a2ecad d0f127c8ccfbe3deeff8fb3b10715b8e { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor' } C3L-03976.miRNA-Seq.T.hg38 C3L-03976 LUAD miRNA-Seq tumor CPT0231920009 f560c5ae-9c42-454e-8c99-577718cb00ac_mirnaseq_gdc_realn.bam 233700633 BAM harmonized CPTAC3 2a275a8c-7663-4067-bc08-dd201c6c14e3 d228c4bc23a9eccf77f3e3fe82254d0c { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor' } -C3L-03976.RNA-Seq.chimeric.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 8311e05b-ffb9-4953-ad09-30b0e0f3af42.rna_seq.chimeric.gdc_realn.bam 35783105 BAM chimeric harmonized CPTAC3 d21a8bb0-c46d-4d45-b235-e06645dd4eb6 947da5c4a3a694a90b11fa157e8dee1c { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03976.RNA-Seq.chimeric.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 f42e6d8c-a7db-46eb-ab72-53e718ee5156.rna_seq.chimeric.gdc_realn.bam 32503153 BAM chimeric harmonized CPTAC3 4ad1f3ff-fb23-4b7b-a5d6-9862137b8b02 502d298b488483599c9cd843ba214653 { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor' } -C3L-03976.RNA-Seq.genomic.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 8311e05b-ffb9-4953-ad09-30b0e0f3af42.rna_seq.genomic.gdc_realn.bam 11110493398 BAM genomic harmonized CPTAC3 cc43d2fe-a021-493f-8844-73c55f00bdf2 7d8a6b3749d30ada54064496f87788d1 { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03976.RNA-Seq.genomic.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 f42e6d8c-a7db-46eb-ab72-53e718ee5156.rna_seq.genomic.gdc_realn.bam 10748418540 BAM genomic harmonized CPTAC3 5dd1bc26-bc5f-4cfe-b320-2627694b38bd 547e8f7d32bb835f6229a6d4503957bf { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor' } -C3L-03976.RNA-Seq.R1_L005.A C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 190607_UNC32-K00270_0179_BH75W2BBXY_ATCCACTG-AGGTGCGT_S19_L005_R1_001.fastq.gz 3626997230 FASTQ R1_L005 unaligned CPTAC3 d02ddc2c-97bf-4e44-acb4-66a4977e8f8e 3752941a47e770bc8b93e8a166ad41d1 { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03976.RNA-Seq.R1_L005.T C3L-03976 LUAD RNA-Seq tumor CPT0231920009 190604_UNC32-K00270_0177_AH7F5VBBXY_TAAGTGGT-CTTAAGCC_S17_L005_R1_001.fastq.gz 3828312219 FASTQ R1_L005 unaligned CPTAC3 ffae055a-9b9e-47be-9ea6-6cbfd63919be aa74659c022a151e3f2e5b0d74497573 { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor' } -C3L-03976.RNA-Seq.R2_L005.A C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 190607_UNC32-K00270_0179_BH75W2BBXY_ATCCACTG-AGGTGCGT_S19_L005_R2_001.fastq.gz 4123451902 FASTQ R2_L005 unaligned CPTAC3 b164eeb6-6729-4436-96bd-a46b0f411f1c 6f7f573fed4acc939284e07a0da72b16 { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03976.RNA-Seq.R2_L005.T C3L-03976 LUAD RNA-Seq tumor CPT0231920009 190604_UNC32-K00270_0177_AH7F5VBBXY_TAAGTGGT-CTTAAGCC_S17_L005_R2_001.fastq.gz 4413490184 FASTQ R2_L005 unaligned CPTAC3 77578ee6-a648-467c-8f69-d57393a72d1e 3e452f523fad84c7cc2e096b62a25cb3 { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor' } -C3L-03976.RNA-Seq.transcriptome.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 8311e05b-ffb9-4953-ad09-30b0e0f3af42.rna_seq.transcriptome.gdc_realn.bam 6858158496 BAM transcriptome harmonized CPTAC3 68e005c6-bc46-4f0e-aec5-161fb9c62c6a 870eadcd7cb4f87a7d39f99ff9cecb73 { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03976.RNA-Seq.transcriptome.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 f42e6d8c-a7db-46eb-ab72-53e718ee5156.rna_seq.transcriptome.gdc_realn.bam 8177921655 BAM transcriptome harmonized CPTAC3 92c36460-5c41-492c-8131-6b772813de1d a1e88f29f83b790ecef4bada8143c94e { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor' } +C3L-03976.RNA-Seq.chimeric.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 5b7ed330-580a-4939-bff8-2128d930ce73.rna_seq.chimeric.gdc_realn.bam 35754791 BAM chimeric harmonized CPTAC3 2a133700-629f-4f74-8b6b-305dde613def dacca239f8563beabfbb9fff5ade8959 { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03976.RNA-Seq.chimeric.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 7fb4049c-5772-4cd9-9591-46c17e6e14ff.rna_seq.chimeric.gdc_realn.bam 32508139 BAM chimeric harmonized CPTAC3 7f47644c-3fcb-419d-a9f3-4890e904be2f a19c8ec825f51a5dc0306d223979f9e8 { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor' } +C3L-03976.RNA-Seq.genomic.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 5b7ed330-580a-4939-bff8-2128d930ce73.rna_seq.genomic.gdc_realn.bam 11111334841 BAM genomic harmonized CPTAC3 71c39737-deb4-48f9-aec3-f56b2a010f2e 550dd6d3e4ec89b6410ac0352d8f32b0 { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03976.RNA-Seq.genomic.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 7fb4049c-5772-4cd9-9591-46c17e6e14ff.rna_seq.genomic.gdc_realn.bam 10750357681 BAM genomic harmonized CPTAC3 3072f939-f729-464e-8282-4ab9b1d4cfe5 0b6a414160b65fbbe1aeffdeedd63fb8 { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor' } +C3L-03976.RNA-Seq.R1_L005.A C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 190607_UNC32-K00270_0179_BH75W2BBXY_ATCCACTG-AGGTGCGT_S19_L005_R1_001.fastq.gz 3626997230 FASTQ R1_L005 unaligned CPTAC3 d02ddc2c-97bf-4e44-acb4-66a4977e8f8e 3752941a47e770bc8b93e8a166ad41d1 { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-03976.RNA-Seq.R1_L005.T C3L-03976 LUAD RNA-Seq tumor CPT0231920009 190604_UNC32-K00270_0177_AH7F5VBBXY_TAAGTGGT-CTTAAGCC_S17_L005_R1_001.fastq.gz 3828312219 FASTQ R1_L005 unaligned CPTAC3 ffae055a-9b9e-47be-9ea6-6cbfd63919be aa74659c022a151e3f2e5b0d74497573 { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-03976.RNA-Seq.R2_L005.A C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 190607_UNC32-K00270_0179_BH75W2BBXY_ATCCACTG-AGGTGCGT_S19_L005_R2_001.fastq.gz 4123451902 FASTQ R2_L005 unaligned CPTAC3 b164eeb6-6729-4436-96bd-a46b0f411f1c 6f7f573fed4acc939284e07a0da72b16 { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-03976.RNA-Seq.R2_L005.T C3L-03976 LUAD RNA-Seq tumor CPT0231920009 190604_UNC32-K00270_0177_AH7F5VBBXY_TAAGTGGT-CTTAAGCC_S17_L005_R2_001.fastq.gz 4413490184 FASTQ R2_L005 unaligned CPTAC3 77578ee6-a648-467c-8f69-d57393a72d1e 3e452f523fad84c7cc2e096b62a25cb3 { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-03976.RNA-Seq.transcriptome.A.hg38 C3L-03976 LUAD RNA-Seq tissue_normal CPT0231930009 5b7ed330-580a-4939-bff8-2128d930ce73.rna_seq.transcriptome.gdc_realn.bam 7714482059 BAM transcriptome harmonized CPTAC3 46bb9ea0-06a4-44c7-89f7-96159167685d e035bc60cf3a3052139416ac831eae72 { 'aliquot_tag': 'ALQ_7bae8a0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03976.RNA-Seq.transcriptome.T.hg38 C3L-03976 LUAD RNA-Seq tumor CPT0231920009 7fb4049c-5772-4cd9-9591-46c17e6e14ff.rna_seq.transcriptome.gdc_realn.bam 9104772852 BAM transcriptome harmonized CPTAC3 7c0fff85-be9b-42a8-aa6c-bf47a2d515e2 63ada731b3704d319c26af0e7f7772cc { 'aliquot_tag': 'ALQ_3adac110', 'gdc_sample_type': 'Primary Tumor' } C3L-03976.WGS.N C3L-03976 LUAD WGS blood_normal CPT0232040002 CPT0232040002.WholeGenome.RP-1303.bam 77786005294 BAM aligned CPTAC3 99f0ef7b-948a-4b34-b79d-2d4f7d9b42a1 2f2d94f15a8aa2fb6d169949b2487f68 { 'aliquot_tag': 'ALQ_34afa66d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03976.WGS.N.hg38 C3L-03976 LUAD WGS blood_normal CPT0232040002 8a234209-d16c-4a7e-8375-70d06e443c9a_wgs_gdc_realn.bam 112790953963 BAM harmonized CPTAC3 3bb202a0-5bef-4e77-87d4-ba6ddd84c38d ad69082250fb8802d575e821ba317ace { 'aliquot_tag': 'ALQ_34afa66d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03976.WGS.T C3L-03976 LUAD WGS tumor CPT0231920006 CPT0231920006.WholeGenome.RP-1303.bam 80585241008 BAM aligned CPTAC3 07c4b6e8-c190-4d5f-98e4-3f4b999b0387 aeea1484b26f168ea85cbbbc263abe00 { 'aliquot_tag': 'ALQ_aa65dc81', 'gdc_sample_type': 'Primary Tumor' } @@ -14346,16 +15228,16 @@ C3L-03982.miRNA-Seq.A.hg38 C3L-03982 LSCC miRNA-Seq tissue_normal CPT0258510009 C3L-03982.miRNA-Seq.T C3L-03982 LSCC miRNA-Seq tumor CPT0258440010 200224_UNC31-K00269_0267_AHC722BBXY_GATCAG_S9_L006_R1_001.unaln.bam 203350495 BAM unaligned CPTAC3 ecad22b1-cd2d-4bb8-9c0c-8a3ce65094b1 c3d8f323122c7c5294c2eb746031c74d { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } C3L-03982.miRNA-Seq.T C3L-03982 LSCC miRNA-Seq tumor CPT0258440010 200526_UNC32-K00270_0248_BHH7WFBBXY_GATCAG_S13_L001_R1_001.unaln.bam 189193316 BAM unaligned CPTAC3 7332a096-ea3b-4d4c-8bbf-7c4a1c066b3a 24787eba626532af29bd2cbcd01fe12d { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } C3L-03982.miRNA-Seq.T.hg38 C3L-03982 LSCC miRNA-Seq tumor CPT0258440010 4465468e-ddcc-46b0-87d7-c0ac04982740_mirnaseq_gdc_realn.bam 431849346 BAM harmonized CPTAC3 2c86a893-bf62-4f57-b09a-fa32a3a325fc b79fd595485fdd38279abe5739c57840 { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } -C3L-03982.RNA-Seq.chimeric.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 6ebbe5fa-c497-4d64-81ab-dc4442574c5b.rna_seq.chimeric.gdc_realn.bam 84627286 BAM chimeric harmonized CPTAC3 4a2c977c-aa10-439d-8f08-6cd4e149fdf0 821946489d234967e6845ca67fa610a3 { 'aliquot_tag': 'ALQ_594f37ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03982.RNA-Seq.chimeric.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 b8ed08eb-2b70-4a23-9d2b-e639ac82c5eb.rna_seq.chimeric.gdc_realn.bam 84376199 BAM chimeric harmonized CPTAC3 24a8f73e-4982-4df5-b20d-c669dac8a59d 3bee10cf794f6bf51a60c02ce0320543 { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } -C3L-03982.RNA-Seq.genomic.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 6ebbe5fa-c497-4d64-81ab-dc4442574c5b.rna_seq.genomic.gdc_realn.bam 9189780359 BAM genomic harmonized CPTAC3 b93947d6-7544-417c-8b62-d8180090ccc9 9e3eb73a3e8eb0e3422240bac00f1404 { 'aliquot_tag': 'ALQ_594f37ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03982.RNA-Seq.genomic.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 b8ed08eb-2b70-4a23-9d2b-e639ac82c5eb.rna_seq.genomic.gdc_realn.bam 8205985312 BAM genomic harmonized CPTAC3 00c75a5e-3a7d-4b6f-8bfa-2c4f9bcea997 f09645d1775230f39a9a4672d0d3c27d { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } -C3L-03982.RNA-Seq.R1_L003.A C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGGCGT-CCTCGGTA_S12_L003_R1_001.fastq.gz 4454069276 FASTQ R1_L003 unaligned CPTAC3 b7c4f99d-2a4c-4653-b15d-48e37b8a0288 52f55dcd3068a4daf1289d476a4e37db { 'aliquot_tag': 'ALQ_594f37ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03982.RNA-Seq.R1_L007.T C3L-03982 LSCC RNA-Seq tumor CPT0258440010 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGCGGCGT-CCTCGGTA_S25_L007_R1_001.fastq.gz 3892919040 FASTQ R1_L007 unaligned CPTAC3 6d360c80-2b51-40ad-8bf9-de80d1e6ba76 0f5ad61e54dca3101623d495962e3b56 { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } -C3L-03982.RNA-Seq.R2_L003.A C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGGCGT-CCTCGGTA_S12_L003_R2_001.fastq.gz 5026528246 FASTQ R2_L003 unaligned CPTAC3 22b21306-98f0-4942-a137-1bc414a5a355 e0e45e9b46f27d11b4002c9f78d67b59 { 'aliquot_tag': 'ALQ_594f37ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03982.RNA-Seq.R2_L007.T C3L-03982 LSCC RNA-Seq tumor CPT0258440010 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGCGGCGT-CCTCGGTA_S25_L007_R2_001.fastq.gz 4189513819 FASTQ R2_L007 unaligned CPTAC3 108bc5a0-64b9-4b7a-be84-884cc5f5e7fe e93cd0b5ce11ac8873e1b712f1895f20 { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } -C3L-03982.RNA-Seq.transcriptome.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 6ebbe5fa-c497-4d64-81ab-dc4442574c5b.rna_seq.transcriptome.gdc_realn.bam 10083290552 BAM transcriptome harmonized CPTAC3 0e12284b-d245-454e-b550-d4d4cf9515ce 8ef0542d05790c909d30a799704dfdb4 { 'aliquot_tag': 'ALQ_594f37ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03982.RNA-Seq.transcriptome.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 b8ed08eb-2b70-4a23-9d2b-e639ac82c5eb.rna_seq.transcriptome.gdc_realn.bam 8072915597 BAM transcriptome harmonized CPTAC3 45c50c5c-8eb2-4a42-8c63-df32ce52bfab 37dde084583eccf3ecbc3c74fca24ccf { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } +C3L-03982.RNA-Seq.chimeric.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 4fb58ddf-ff96-4f07-9556-6d3c3c31b70d.rna_seq.chimeric.gdc_realn.bam 84597980 BAM chimeric harmonized CPTAC3 e52c2b2c-2076-42f4-ae36-be6d2d9d1f77 ea4fbffe52e1ba8948aaca3cee1ec504 { 'aliquot_tag': 'ALQ_594f37ef', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03982.RNA-Seq.chimeric.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 040e66bf-a014-4e8c-802c-b1d9d5eb2143.rna_seq.chimeric.gdc_realn.bam 84359473 BAM chimeric harmonized CPTAC3 36f97a15-26a4-4acc-a022-db6cd74e77ad 176173ec52a75620876156b1bc772fc3 { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } +C3L-03982.RNA-Seq.genomic.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 4fb58ddf-ff96-4f07-9556-6d3c3c31b70d.rna_seq.genomic.gdc_realn.bam 9191341732 BAM genomic harmonized CPTAC3 53358b70-1402-49aa-ac8d-4894d4ee1548 6c900d843295ca112cd052a8033d7728 { 'aliquot_tag': 'ALQ_594f37ef', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03982.RNA-Seq.genomic.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 040e66bf-a014-4e8c-802c-b1d9d5eb2143.rna_seq.genomic.gdc_realn.bam 8208033794 BAM genomic harmonized CPTAC3 6370580c-0281-48f7-bec9-b7954b8259d8 cd71febf5ef66eaf9a6d6e5dd2920a96 { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } +C3L-03982.RNA-Seq.R1_L003.A C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGGCGT-CCTCGGTA_S12_L003_R1_001.fastq.gz 4454069276 FASTQ R1_L003 unaligned CPTAC3 b7c4f99d-2a4c-4653-b15d-48e37b8a0288 52f55dcd3068a4daf1289d476a4e37db { 'aliquot_tag': 'ALQ_594f37ef', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-03982.RNA-Seq.R1_L007.T C3L-03982 LSCC RNA-Seq tumor CPT0258440010 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGCGGCGT-CCTCGGTA_S25_L007_R1_001.fastq.gz 3892919040 FASTQ R1_L007 unaligned CPTAC3 6d360c80-2b51-40ad-8bf9-de80d1e6ba76 0f5ad61e54dca3101623d495962e3b56 { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-03982.RNA-Seq.R2_L003.A C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGGCGT-CCTCGGTA_S12_L003_R2_001.fastq.gz 5026528246 FASTQ R2_L003 unaligned CPTAC3 22b21306-98f0-4942-a137-1bc414a5a355 e0e45e9b46f27d11b4002c9f78d67b59 { 'aliquot_tag': 'ALQ_594f37ef', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-03982.RNA-Seq.R2_L007.T C3L-03982 LSCC RNA-Seq tumor CPT0258440010 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGCGGCGT-CCTCGGTA_S25_L007_R2_001.fastq.gz 4189513819 FASTQ R2_L007 unaligned CPTAC3 108bc5a0-64b9-4b7a-be84-884cc5f5e7fe e93cd0b5ce11ac8873e1b712f1895f20 { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-03982.RNA-Seq.transcriptome.A.hg38 C3L-03982 LSCC RNA-Seq tissue_normal CPT0258510009 4fb58ddf-ff96-4f07-9556-6d3c3c31b70d.rna_seq.transcriptome.gdc_realn.bam 11486185853 BAM transcriptome harmonized CPTAC3 3eb5b6ac-f7af-4da4-8f88-7f02ab43212d 8067964601f9eeefd3e8118f89fa071e { 'aliquot_tag': 'ALQ_594f37ef', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03982.RNA-Seq.transcriptome.T.hg38 C3L-03982 LSCC RNA-Seq tumor CPT0258440010 040e66bf-a014-4e8c-802c-b1d9d5eb2143.rna_seq.transcriptome.gdc_realn.bam 9103820075 BAM transcriptome harmonized CPTAC3 1650337d-8576-4e22-b885-1456d0f5a1c6 4ca699bb4511cbce3172bc0bf438b9f3 { 'aliquot_tag': 'ALQ_3a34e2df', 'gdc_sample_type': 'Primary Tumor' } C3L-03982.WGS.N C3L-03982 LSCC WGS blood_normal CPT0258600002 CPT0258600002.WholeGenome.RP-2158.bam 23898985421 BAM aligned CPTAC3 3d76dc67-8732-4f2a-ac46-fd6acead75d8 771cd5c2145082e651953445fbdb0d90 { 'aliquot_tag': 'ALQ_7569b579', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03982.WGS.N.hg38 C3L-03982 LSCC WGS blood_normal CPT0258600002 7f608378-bf18-46f6-8c8b-9daca5743541_wgs_gdc_realn.bam 72207406429 BAM harmonized CPTAC3 a801f2d8-be1d-4543-a17c-549e5c03f77b 4afdf0020d30f0a0c178457f6e8f859a { 'aliquot_tag': 'ALQ_7569b579', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03982.WGS.T C3L-03982 LSCC WGS tumor CPT0258440007 CPT0258440007.WholeGenome.RP-2158.bam 26240888901 BAM aligned CPTAC3 dd633f78-e6b6-4d62-ba2b-26bac8c4ee8d fbb0f51a8ec3db2c57323fc35bbc6604 { 'aliquot_tag': 'ALQ_bd4b463d', 'gdc_sample_type': 'Primary Tumor' } @@ -14374,16 +15256,16 @@ C3L-03984.miRNA-Seq.A C3L-03984 LUAD miRNA-Seq tissue_normal CPT0242720009 19071 C3L-03984.miRNA-Seq.A.hg38 C3L-03984 LUAD miRNA-Seq tissue_normal CPT0242720009 e6c9b1fc-63f2-47e9-aaf7-11821e4aa16d_mirnaseq_gdc_realn.bam 230822553 BAM harmonized CPTAC3 539252d7-bba5-4797-976b-cb93aacafab0 669ec40149850bc681f55706a764a2c2 { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03984.miRNA-Seq.T C3L-03984 LUAD miRNA-Seq tumor CPT0242670010 190722_UNC31-K00269_0234_AH7VGTBBXY_ATCACG_S41_L007_R1_001.unaln.bam 188211240 BAM unaligned CPTAC3 f273cd4e-707f-49ad-ae21-d64b133c3df1 171115e5d962490f93d57a27697d3021 { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor' } C3L-03984.miRNA-Seq.T.hg38 C3L-03984 LUAD miRNA-Seq tumor CPT0242670010 49a2c39a-2551-4b94-8510-1d03c86a33ea_mirnaseq_gdc_realn.bam 208383199 BAM harmonized CPTAC3 87391410-7d8f-48c7-9f34-494df398852b ee97c1f2051f5edbc8f532f880124824 { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03984.RNA-Seq.chimeric.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 d882ecd5-22b3-4cbd-8d40-36162e838c61.rna_seq.chimeric.gdc_realn.bam 33283040 BAM chimeric harmonized CPTAC3 3a332d36-9ef2-4eb2-b785-0c6753e21cdd 5f043f11d1ca1489272882baeacaf0c4 { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03984.RNA-Seq.chimeric.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 1bd2b8d1-91b8-486e-a943-74a81ad61b24.rna_seq.chimeric.gdc_realn.bam 48939403 BAM chimeric harmonized CPTAC3 0546340e-9f88-44d4-ae06-7fda17737bf0 e41bf208febe200ebcd96d8649091d5e { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03984.RNA-Seq.genomic.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 d882ecd5-22b3-4cbd-8d40-36162e838c61.rna_seq.genomic.gdc_realn.bam 7225680001 BAM genomic harmonized CPTAC3 2034a16e-e0ea-47ff-a5c4-c46732ad9404 39df3e89d97bb5a908e91f66d09ebdeb { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03984.RNA-Seq.genomic.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 1bd2b8d1-91b8-486e-a943-74a81ad61b24.rna_seq.genomic.gdc_realn.bam 9943976069 BAM genomic harmonized CPTAC3 bbf6ae42-fbed-48b3-bc5a-9e3b482f1519 08aa5681c662c5032a687321c152d116 { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03984.RNA-Seq.R1_L001.A C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCAGAATT-ACCGGCCA_S4_L001_R1_001.fastq.gz 2931632052 FASTQ R1_L001 unaligned CPTAC3 f1aa105a-4e47-4ca3-a5b2-e95de86ba8f1 29cac178cf189749df516e5e4e9107f0 { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03984.RNA-Seq.R1_L008.T C3L-03984 LUAD RNA-Seq tumor CPT0242670010 190607_UNC32-K00270_0179_BH75W2BBXY_ATATCTCG-ATCTTAGT_S31_L008_R1_001.fastq.gz 4763611919 FASTQ R1_L008 unaligned CPTAC3 0fabed7e-bbe4-4c69-983f-149ab16d89f2 706abaa59e8a5c756df58a390d0fdd1e { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03984.RNA-Seq.R2_L001.A C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCAGAATT-ACCGGCCA_S4_L001_R2_001.fastq.gz 3359972556 FASTQ R2_L001 unaligned CPTAC3 3da66fa0-da26-4240-b0c9-432abcc2c74d 6ce3e7f13a0e3827c41e49c23e9bdad6 { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03984.RNA-Seq.R2_L008.T C3L-03984 LUAD RNA-Seq tumor CPT0242670010 190607_UNC32-K00270_0179_BH75W2BBXY_ATATCTCG-ATCTTAGT_S31_L008_R2_001.fastq.gz 5171983816 FASTQ R2_L008 unaligned CPTAC3 2e00e27b-a33a-4614-ad29-4948341280a7 55361e40f5e077670d684c01d19fa254 { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor' } -C3L-03984.RNA-Seq.transcriptome.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 d882ecd5-22b3-4cbd-8d40-36162e838c61.rna_seq.transcriptome.gdc_realn.bam 5627289927 BAM transcriptome harmonized CPTAC3 d98b5bf7-8dbd-4f3c-934e-7881077360ad e890f048826ff0aa953df2a1f9ac16d4 { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03984.RNA-Seq.transcriptome.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 1bd2b8d1-91b8-486e-a943-74a81ad61b24.rna_seq.transcriptome.gdc_realn.bam 9887643641 BAM transcriptome harmonized CPTAC3 dee91579-2afd-4229-81e2-a0d4106703e8 bafbe9e5bd3582fe41946c5b8bbb2de3 { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor' } +C3L-03984.RNA-Seq.chimeric.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 00d0d6f5-c08d-4fb0-88d2-3cfceec7f235.rna_seq.chimeric.gdc_realn.bam 33271643 BAM chimeric harmonized CPTAC3 13affa53-cce3-4a30-b206-907c03f93cac 8070bcd7512c7b7d2df926194ebce36e { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03984.RNA-Seq.chimeric.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 2426ea79-e08c-4686-b74e-d365cd227b79.rna_seq.chimeric.gdc_realn.bam 48934657 BAM chimeric harmonized CPTAC3 313fde57-a613-49fb-8ed9-08354a3f6106 2f267f0bd55ff550213986a1f13cc4c8 { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor' } +C3L-03984.RNA-Seq.genomic.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 00d0d6f5-c08d-4fb0-88d2-3cfceec7f235.rna_seq.genomic.gdc_realn.bam 7226578047 BAM genomic harmonized CPTAC3 4a8b2560-5c73-4230-98c1-737b150b0aab 2fa9b1c479575fdcbded3f1fe5c5c937 { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03984.RNA-Seq.genomic.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 2426ea79-e08c-4686-b74e-d365cd227b79.rna_seq.genomic.gdc_realn.bam 9945258468 BAM genomic harmonized CPTAC3 e6a123e8-6409-46c0-a3c2-78ad746329e7 3534086b69a7ed146debf9c83c81cd5c { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor' } +C3L-03984.RNA-Seq.R1_L001.A C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCAGAATT-ACCGGCCA_S4_L001_R1_001.fastq.gz 2931632052 FASTQ R1_L001 unaligned CPTAC3 f1aa105a-4e47-4ca3-a5b2-e95de86ba8f1 29cac178cf189749df516e5e4e9107f0 { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-03984.RNA-Seq.R1_L008.T C3L-03984 LUAD RNA-Seq tumor CPT0242670010 190607_UNC32-K00270_0179_BH75W2BBXY_ATATCTCG-ATCTTAGT_S31_L008_R1_001.fastq.gz 4763611919 FASTQ R1_L008 unaligned CPTAC3 0fabed7e-bbe4-4c69-983f-149ab16d89f2 706abaa59e8a5c756df58a390d0fdd1e { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-03984.RNA-Seq.R2_L001.A C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCAGAATT-ACCGGCCA_S4_L001_R2_001.fastq.gz 3359972556 FASTQ R2_L001 unaligned CPTAC3 3da66fa0-da26-4240-b0c9-432abcc2c74d 6ce3e7f13a0e3827c41e49c23e9bdad6 { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-03984.RNA-Seq.R2_L008.T C3L-03984 LUAD RNA-Seq tumor CPT0242670010 190607_UNC32-K00270_0179_BH75W2BBXY_ATATCTCG-ATCTTAGT_S31_L008_R2_001.fastq.gz 5171983816 FASTQ R2_L008 unaligned CPTAC3 2e00e27b-a33a-4614-ad29-4948341280a7 55361e40f5e077670d684c01d19fa254 { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-03984.RNA-Seq.transcriptome.A.hg38 C3L-03984 LUAD RNA-Seq tissue_normal CPT0242720009 00d0d6f5-c08d-4fb0-88d2-3cfceec7f235.rna_seq.transcriptome.gdc_realn.bam 6390235601 BAM transcriptome harmonized CPTAC3 8c15c771-05b7-48ff-8bcf-347aaf9b9849 eea7192d169f4320abde15131a881204 { 'aliquot_tag': 'ALQ_3bfdb3e4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03984.RNA-Seq.transcriptome.T.hg38 C3L-03984 LUAD RNA-Seq tumor CPT0242670010 2426ea79-e08c-4686-b74e-d365cd227b79.rna_seq.transcriptome.gdc_realn.bam 11180776254 BAM transcriptome harmonized CPTAC3 e47346fd-0f2c-4afe-b813-4a0e8dc0c947 a6ff43d508906eb2b6bfb3efc761e7ce { 'aliquot_tag': 'ALQ_588666d4', 'gdc_sample_type': 'Primary Tumor' } C3L-03984.WGS.N C3L-03984 LUAD WGS blood_normal CPT0242830002 CPT0242830002.WholeGenome.RP-1303.bam 57814826092 BAM aligned CPTAC3 c903faa9-c3df-41c5-a0b2-57d51401c272 a3405adc4d2cec58b858cd92d6446c0c { 'aliquot_tag': 'ALQ_6019f109', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03984.WGS.N.hg38 C3L-03984 LUAD WGS blood_normal CPT0242830002 699d16f1-8b4b-4b48-9876-44499a56b13a_wgs_gdc_realn.bam 84479223902 BAM harmonized CPTAC3 00a2f18b-73ee-4edb-85ea-9eaabb554b8a 21ef541d43cdd512e89e5612d9a21cf3 { 'aliquot_tag': 'ALQ_6019f109', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03984.WGS.T C3L-03984 LUAD WGS tumor CPT0242670007 CPT0242670007.WholeGenome.RP-1303.bam 72781420557 BAM aligned CPTAC3 ce5eed28-318d-43dc-aab0-1915eef36591 3ae448dddd0d2a1734564dc954fd8e92 { 'aliquot_tag': 'ALQ_dff9c236', 'gdc_sample_type': 'Primary Tumor' } @@ -14402,16 +15284,16 @@ C3L-03985.miRNA-Seq.A C3L-03985 LUAD miRNA-Seq tissue_normal CPT0254910010 19072 C3L-03985.miRNA-Seq.A.hg38 C3L-03985 LUAD miRNA-Seq tissue_normal CPT0254910010 2fac4b37-e831-494b-aed3-25a955786190_mirnaseq_gdc_realn.bam 180897228 BAM harmonized CPTAC3 dd465527-ee64-4ba3-a81c-48c07af4699a ff8acd5a928313c51bd19595cb64a162 { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03985.miRNA-Seq.T C3L-03985 LUAD miRNA-Seq tumor CPT0254880010 190722_UNC31-K00269_0234_AH7VGTBBXY_TTAGGC_S43_L007_R1_001.unaln.bam 178285923 BAM unaligned CPTAC3 1995c4e5-0b6f-40c6-b269-5de1fd1da6ec d20cc97e7aeebdc50ef8024336e30869 { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor' } C3L-03985.miRNA-Seq.T.hg38 C3L-03985 LUAD miRNA-Seq tumor CPT0254880010 6331c93c-43e4-44fd-91ef-e362aa6b1883_mirnaseq_gdc_realn.bam 196129874 BAM harmonized CPTAC3 c9d00c12-0087-4830-b9d4-25417fbd9de1 23a1f8fab79b562d09a8b118843d136b { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor' } -C3L-03985.RNA-Seq.chimeric.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 8dc9198e-dd3c-43f6-8fc2-4acf72f6857c.rna_seq.chimeric.gdc_realn.bam 28252097 BAM chimeric harmonized CPTAC3 309ccd38-094d-404c-9ef4-d07706e612b0 346081c27bd7d29b40f5f6eea31cc475 { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03985.RNA-Seq.chimeric.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 c480277a-b8cb-4056-a213-484704db50a3.rna_seq.chimeric.gdc_realn.bam 39868661 BAM chimeric harmonized CPTAC3 42c03bb6-3c13-4ffd-be01-556a114a7630 8f6d5d6fd7c2b351c51a0bc0a1f3bfc5 { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor' } -C3L-03985.RNA-Seq.genomic.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 8dc9198e-dd3c-43f6-8fc2-4acf72f6857c.rna_seq.genomic.gdc_realn.bam 10077364166 BAM genomic harmonized CPTAC3 30294442-1e30-4941-86d7-39d78aa243ab 65c3f36f094c1c570e6192ae4b91fddf { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03985.RNA-Seq.genomic.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 c480277a-b8cb-4056-a213-484704db50a3.rna_seq.genomic.gdc_realn.bam 9588287052 BAM genomic harmonized CPTAC3 bad2fe00-0a05-4ecf-b65f-717da626ba31 a3c39c51bfeba020728c0a360a68b0bd { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor' } -C3L-03985.RNA-Seq.R1_L002.A C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 190607_UNC32-K00270_0178_AH773TBBXY_CGCTATGT-TCCGACAC_S8_L002_R1_001.fastq.gz 3662036527 FASTQ R1_L002 unaligned CPTAC3 54dfb0af-453c-4b8e-a8d9-d04e7281412b a19ca37c44df8d3022de61476144f75c { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03985.RNA-Seq.R1_L007.T C3L-03985 LUAD RNA-Seq tumor CPT0254880010 190607_UNC32-K00270_0179_BH75W2BBXY_AACAGGTT-ATACCAAG_S25_L007_R1_001.fastq.gz 4489985968 FASTQ R1_L007 unaligned CPTAC3 8a4011af-5392-4312-8667-f6c36e0f18c8 94e60186aa70f78f79fab29d1c3e7bd5 { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor' } -C3L-03985.RNA-Seq.R2_L002.A C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 190607_UNC32-K00270_0178_AH773TBBXY_CGCTATGT-TCCGACAC_S8_L002_R2_001.fastq.gz 4242134507 FASTQ R2_L002 unaligned CPTAC3 6425132a-97b4-43cc-9fbe-3b44d2646263 8b8b658407c66eb2b66e4494a7c96575 { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03985.RNA-Seq.R2_L007.T C3L-03985 LUAD RNA-Seq tumor CPT0254880010 190607_UNC32-K00270_0179_BH75W2BBXY_AACAGGTT-ATACCAAG_S25_L007_R2_001.fastq.gz 4876931429 FASTQ R2_L007 unaligned CPTAC3 1268677c-512f-4f58-9b5e-053863b2aed8 0c56883573ec6b3c947b0d8899a0029d { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor' } -C3L-03985.RNA-Seq.transcriptome.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 8dc9198e-dd3c-43f6-8fc2-4acf72f6857c.rna_seq.transcriptome.gdc_realn.bam 6842470094 BAM transcriptome harmonized CPTAC3 1ddb6726-8219-4318-9476-d2339572935f f05d91ffc069cf393b0c02ba5c8635c3 { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03985.RNA-Seq.transcriptome.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 c480277a-b8cb-4056-a213-484704db50a3.rna_seq.transcriptome.gdc_realn.bam 10202765446 BAM transcriptome harmonized CPTAC3 2d22d5e2-e1ad-4564-a41c-70e7bc4fb7a0 7cedaff466ccbbfb191a94f4892d26fa { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor' } +C3L-03985.RNA-Seq.chimeric.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 2f34ee3c-e060-4f01-bf03-bb13f52f87dc.rna_seq.chimeric.gdc_realn.bam 28231823 BAM chimeric harmonized CPTAC3 070f0e63-696e-443d-99ab-dee313947358 0190e6a7d47674ab62c30dd67f2d2dd3 { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03985.RNA-Seq.chimeric.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 d3220cb1-bdfa-47b7-a8b2-d64138b8c399.rna_seq.chimeric.gdc_realn.bam 39854452 BAM chimeric harmonized CPTAC3 07259cf4-0b74-49b8-95d1-cbb76b19b682 3dce394010bbd208b5abebb820c0800f { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor' } +C3L-03985.RNA-Seq.genomic.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 2f34ee3c-e060-4f01-bf03-bb13f52f87dc.rna_seq.genomic.gdc_realn.bam 10075483300 BAM genomic harmonized CPTAC3 1b68d86f-1b36-4380-b4a9-f7cfdf0bdf6e 9b1c820db989fa550c0e0664f788725e { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03985.RNA-Seq.genomic.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 d3220cb1-bdfa-47b7-a8b2-d64138b8c399.rna_seq.genomic.gdc_realn.bam 9589937083 BAM genomic harmonized CPTAC3 731759f7-36bf-43e1-902e-84d97b58d727 e47e3ccd67c3b0fe671579f0bfc07cab { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor' } +C3L-03985.RNA-Seq.R1_L002.A C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 190607_UNC32-K00270_0178_AH773TBBXY_CGCTATGT-TCCGACAC_S8_L002_R1_001.fastq.gz 3662036527 FASTQ R1_L002 unaligned CPTAC3 54dfb0af-453c-4b8e-a8d9-d04e7281412b a19ca37c44df8d3022de61476144f75c { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-03985.RNA-Seq.R1_L007.T C3L-03985 LUAD RNA-Seq tumor CPT0254880010 190607_UNC32-K00270_0179_BH75W2BBXY_AACAGGTT-ATACCAAG_S25_L007_R1_001.fastq.gz 4489985968 FASTQ R1_L007 unaligned CPTAC3 8a4011af-5392-4312-8667-f6c36e0f18c8 94e60186aa70f78f79fab29d1c3e7bd5 { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-03985.RNA-Seq.R2_L002.A C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 190607_UNC32-K00270_0178_AH773TBBXY_CGCTATGT-TCCGACAC_S8_L002_R2_001.fastq.gz 4242134507 FASTQ R2_L002 unaligned CPTAC3 6425132a-97b4-43cc-9fbe-3b44d2646263 8b8b658407c66eb2b66e4494a7c96575 { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-03985.RNA-Seq.R2_L007.T C3L-03985 LUAD RNA-Seq tumor CPT0254880010 190607_UNC32-K00270_0179_BH75W2BBXY_AACAGGTT-ATACCAAG_S25_L007_R2_001.fastq.gz 4876931429 FASTQ R2_L007 unaligned CPTAC3 1268677c-512f-4f58-9b5e-053863b2aed8 0c56883573ec6b3c947b0d8899a0029d { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-03985.RNA-Seq.transcriptome.A.hg38 C3L-03985 LUAD RNA-Seq tissue_normal CPT0254910010 2f34ee3c-e060-4f01-bf03-bb13f52f87dc.rna_seq.transcriptome.gdc_realn.bam 7764835733 BAM transcriptome harmonized CPTAC3 dcbf1ff5-ffe9-4cb8-a6c2-93d9fcad50b5 db4b2ab973a61ea454d399cb1fc80b5c { 'aliquot_tag': 'ALQ_89ea1405', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03985.RNA-Seq.transcriptome.T.hg38 C3L-03985 LUAD RNA-Seq tumor CPT0254880010 d3220cb1-bdfa-47b7-a8b2-d64138b8c399.rna_seq.transcriptome.gdc_realn.bam 11620197258 BAM transcriptome harmonized CPTAC3 fe6c764b-e896-48a2-9e95-19760d13d032 8530ff2de40883b020b5c89dd6ceb15d { 'aliquot_tag': 'ALQ_4fa6a5d1', 'gdc_sample_type': 'Primary Tumor' } C3L-03985.WGS.N C3L-03985 LUAD WGS blood_normal CPT0255020002 CPT0255020002.WholeGenome.RP-1303.bam 83398337617 BAM aligned CPTAC3 14147a08-ab16-45ae-8d79-ff58b0e6b3bd 8d1b39db1b4c6f46d01b1e01c3907063 { 'aliquot_tag': 'ALQ_b82764c4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03985.WGS.N.hg38 C3L-03985 LUAD WGS blood_normal CPT0255020002 ff8fdf8a-b5f6-46da-9e48-b4ca6d584d0b_wgs_gdc_realn.bam 122987289593 BAM harmonized CPTAC3 5aba0e04-2e1f-4ae7-918c-8261be9bcddb ab0526cfc51bc1e18cc3b6dc4952730d { 'aliquot_tag': 'ALQ_b82764c4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03985.WGS.T C3L-03985 LUAD WGS tumor CPT0254880007 CPT0254880007.WholeGenome.RP-1303.bam 57878855669 BAM aligned CPTAC3 773d767b-8f4b-4319-bc59-50daaa452b47 68275bde23ef4f09e43ddb6fdbf6ccb7 { 'aliquot_tag': 'ALQ_c8d90133', 'gdc_sample_type': 'Primary Tumor' } @@ -14430,16 +15312,16 @@ C3L-03987.miRNA-Seq.A C3L-03987 LSCC miRNA-Seq tissue_normal CPT0252590006 20051 C3L-03987.miRNA-Seq.A.hg38 C3L-03987 LSCC miRNA-Seq tissue_normal CPT0252590006 78a3b6e2-1284-4a64-b2a5-69d907a6a5db_mirnaseq_gdc_realn.bam 325626703 BAM harmonized CPTAC3 557b919c-13f5-4d9f-980a-2ae3e7158bb4 324a781b94f79b6c4ec5775ddc72396c { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-03987.miRNA-Seq.T C3L-03987 LSCC miRNA-Seq tumor CPT0252540013 200325_UNC31-K00269_0272_AHHC2NBBXY_CTATAC_S15_L001_R1_001.unaln.bam 261348339 BAM unaligned CPTAC3 2d37ae53-7b41-4f05-9d1c-74b2992d79f2 149325268fcd4e61c57c619f6f247e85 { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor' } C3L-03987.miRNA-Seq.T.hg38 C3L-03987 LSCC miRNA-Seq tumor CPT0252540013 e44c8fb3-1eca-4b5a-9289-1cdc6e2d8650_mirnaseq_gdc_realn.bam 281426554 BAM harmonized CPTAC3 f74cd8f8-afff-44db-93d9-c85841d4738b 39d13b6ef5aec9e6c4d906d9d47b9025 { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03987.RNA-Seq.chimeric.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 1e27ca0b-14ef-4ccf-8db5-ede2c7ae2e2d.rna_seq.chimeric.gdc_realn.bam 32739472 BAM chimeric harmonized CPTAC3 6e4c1fc5-bc77-44b2-8296-5d9489917052 79b20a9352d4d802648665c366589101 { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03987.RNA-Seq.chimeric.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 53e5b565-1e34-4901-8659-fce0316dd1b3.rna_seq.chimeric.gdc_realn.bam 85664612 BAM chimeric harmonized CPTAC3 88f006b4-b6a8-434c-9d19-208163787bca 6097d2d3109f3d20dfb8e595a9b8c063 { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03987.RNA-Seq.genomic.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 1e27ca0b-14ef-4ccf-8db5-ede2c7ae2e2d.rna_seq.genomic.gdc_realn.bam 8557293739 BAM genomic harmonized CPTAC3 81a4f21f-78d9-4173-94a8-05c3b04fafa0 44958cc1c1fe20c5197cbec3cf1b5697 { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03987.RNA-Seq.genomic.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 53e5b565-1e34-4901-8659-fce0316dd1b3.rna_seq.genomic.gdc_realn.bam 7710246622 BAM genomic harmonized CPTAC3 1597e9c1-af4f-4a11-ac92-11dac1ad53c8 7e8e19b2fd34251a420feabe2d7610c2 { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03987.RNA-Seq.R1_L006.A C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 200505_UNC32-K00270_0246_BHH5F5BBXY_TAAGTGGT-CTTAAGCC_S23_L006_R1_001.fastq.gz 3917487475 FASTQ R1_L006 unaligned CPTAC3 8a661ca8-7570-4cba-a726-78205f60aa1b 8be71db0297d31751134612fb6ab7291 { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03987.RNA-Seq.R1_L006.T C3L-03987 LSCC RNA-Seq tumor CPT0252540013 200428_UNC31-K00269_0275_AHGCJVBBXY_CTCACCAA-CTAGGCAA_S23_L006_R1_001.fastq.gz 3904992759 FASTQ R1_L006 unaligned CPTAC3 f67c42b8-3e96-439f-9be0-26efce378646 c268ff318fe8a57ef210444c2048eaf9 { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03987.RNA-Seq.R2_L006.A C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 200505_UNC32-K00270_0246_BHH5F5BBXY_TAAGTGGT-CTTAAGCC_S23_L006_R2_001.fastq.gz 4781947706 FASTQ R2_L006 unaligned CPTAC3 aff407f2-bcab-4cb6-8336-5444bff8bb06 7386a790b34f08bbb10fd1d3997f06ae { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03987.RNA-Seq.R2_L006.T C3L-03987 LSCC RNA-Seq tumor CPT0252540013 200428_UNC31-K00269_0275_AHGCJVBBXY_CTCACCAA-CTAGGCAA_S23_L006_R2_001.fastq.gz 4106265099 FASTQ R2_L006 unaligned CPTAC3 d6acd99d-46a3-4459-a08f-e4a4b11ee4d0 e05c3424e742a083f09bd1c653a8fe48 { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor' } -C3L-03987.RNA-Seq.transcriptome.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 1e27ca0b-14ef-4ccf-8db5-ede2c7ae2e2d.rna_seq.transcriptome.gdc_realn.bam 8387114459 BAM transcriptome harmonized CPTAC3 94eabc50-8156-4092-8d12-c06985ced76d ee6766a404f9e73b6132d9aec1832f63 { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-03987.RNA-Seq.transcriptome.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 53e5b565-1e34-4901-8659-fce0316dd1b3.rna_seq.transcriptome.gdc_realn.bam 9749398926 BAM transcriptome harmonized CPTAC3 5c58dd72-908e-4e92-8205-908611f64b6b ee622e19e9cb51bbb0bf06c4d97ddf6a { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor' } +C3L-03987.RNA-Seq.chimeric.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 8d7fff56-3fc5-4133-9180-47d63d759b7d.rna_seq.chimeric.gdc_realn.bam 32723132 BAM chimeric harmonized CPTAC3 b356005d-8a36-40ca-9fd0-8acc277f12eb 9dd081c3510de64b897211ec25860a63 { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03987.RNA-Seq.chimeric.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 ab60d44a-8919-43e6-9c23-90e848931af6.rna_seq.chimeric.gdc_realn.bam 85666900 BAM chimeric harmonized CPTAC3 4e5720dd-c3fa-430a-89f7-952a252ae9cd 9725c15e23ee39b4c04e2bcb0bc419e0 { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor' } +C3L-03987.RNA-Seq.genomic.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 8d7fff56-3fc5-4133-9180-47d63d759b7d.rna_seq.genomic.gdc_realn.bam 8558293208 BAM genomic harmonized CPTAC3 a4f14f87-7a07-4004-90b2-3a2407ad5264 158b9554914b2da98a86138066041bca { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03987.RNA-Seq.genomic.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 ab60d44a-8919-43e6-9c23-90e848931af6.rna_seq.genomic.gdc_realn.bam 7712339248 BAM genomic harmonized CPTAC3 00e7e7a6-a173-40f0-9142-ec6a649decac 201700b9e3eff79398b45deaedfbef5a { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor' } +C3L-03987.RNA-Seq.R1_L006.A C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 200505_UNC32-K00270_0246_BHH5F5BBXY_TAAGTGGT-CTTAAGCC_S23_L006_R1_001.fastq.gz 3917487475 FASTQ R1_L006 unaligned CPTAC3 8a661ca8-7570-4cba-a726-78205f60aa1b 8be71db0297d31751134612fb6ab7291 { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-03987.RNA-Seq.R1_L006.T C3L-03987 LSCC RNA-Seq tumor CPT0252540013 200428_UNC31-K00269_0275_AHGCJVBBXY_CTCACCAA-CTAGGCAA_S23_L006_R1_001.fastq.gz 3904992759 FASTQ R1_L006 unaligned CPTAC3 f67c42b8-3e96-439f-9be0-26efce378646 c268ff318fe8a57ef210444c2048eaf9 { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-03987.RNA-Seq.R2_L006.A C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 200505_UNC32-K00270_0246_BHH5F5BBXY_TAAGTGGT-CTTAAGCC_S23_L006_R2_001.fastq.gz 4781947706 FASTQ R2_L006 unaligned CPTAC3 aff407f2-bcab-4cb6-8336-5444bff8bb06 7386a790b34f08bbb10fd1d3997f06ae { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-03987.RNA-Seq.R2_L006.T C3L-03987 LSCC RNA-Seq tumor CPT0252540013 200428_UNC31-K00269_0275_AHGCJVBBXY_CTCACCAA-CTAGGCAA_S23_L006_R2_001.fastq.gz 4106265099 FASTQ R2_L006 unaligned CPTAC3 d6acd99d-46a3-4459-a08f-e4a4b11ee4d0 e05c3424e742a083f09bd1c653a8fe48 { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-03987.RNA-Seq.transcriptome.A.hg38 C3L-03987 LSCC RNA-Seq tissue_normal CPT0252590006 8d7fff56-3fc5-4133-9180-47d63d759b7d.rna_seq.transcriptome.gdc_realn.bam 9523577768 BAM transcriptome harmonized CPTAC3 68b1f4c7-7062-43f3-b11a-c21ecb2e5bdd 5a4f559669996f30cca0686c59cdbeb9 { 'aliquot_tag': 'ALQ_5df03ef1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-03987.RNA-Seq.transcriptome.T.hg38 C3L-03987 LSCC RNA-Seq tumor CPT0252540013 ab60d44a-8919-43e6-9c23-90e848931af6.rna_seq.transcriptome.gdc_realn.bam 10910912544 BAM transcriptome harmonized CPTAC3 c0895db7-26ee-4d22-86be-9a6f4262819b 6383b083b45413ff2aa0fd60c00ed9be { 'aliquot_tag': 'ALQ_cc113f8e', 'gdc_sample_type': 'Primary Tumor' } C3L-03987.WGS.N C3L-03987 LSCC WGS blood_normal CPT0252700002 CPT0252700002.WholeGenome.RP-2158.bam 21229115177 BAM aligned CPTAC3 8e8419d5-650d-4b80-b9c6-a5549c322550 e8355a371bdf55693037a6512a5ecc5c { 'aliquot_tag': 'ALQ_1a453992', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03987.WGS.N.hg38 C3L-03987 LSCC WGS blood_normal CPT0252700002 00f9704c-e6ea-446b-ac12-1f310e969a2b_wgs_gdc_realn.bam 63542945824 BAM harmonized CPTAC3 c88a46c1-fe32-430b-a123-5a297afef1c0 ef6eacc58aee6248b87f67a02bdb3157 { 'aliquot_tag': 'ALQ_1a453992', 'gdc_sample_type': 'Blood Derived Normal' } C3L-03987.WGS.T C3L-03987 LSCC WGS tumor CPT0252540006 CPT0252540006.WholeGenome.RP-2158.bam 25941364632 BAM aligned CPTAC3 f03ce40b-71d0-41c3-ae24-6a6eb64b34fb 1b38c1e8238ef8dc328a2ca5205ada37 { 'aliquot_tag': 'ALQ_a560fa40', 'gdc_sample_type': 'Primary Tumor' } @@ -14460,12 +15342,12 @@ C3L-04013.miRNA-Seq.T C3L-04013 LSCC miRNA-Seq tumor CPT0233320009 190206_UNC31- C3L-04013.miRNA-Seq.T.hg38 C3L-04013 LSCC miRNA-Seq tumor CPT0233320009 794bdc00-aaee-4a7f-9547-5a26200cf038_mirnaseq_gdc_realn.bam 223147285 BAM harmonized CPTAC3 e14b1d68-5167-43a6-873b-99a2478f4ae9 ddd2ae2d81dcb5460aab6d30771a60f5 { 'aliquot_tag': 'ALQ_cdef35f', 'gdc_sample_type': 'Primary Tumor' } C3L-04013.RNA-Seq.chimeric.A.hg38 C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 9871ba67-0e86-4dfb-aa9e-f5bfcc335a89.rna_seq.chimeric.gdc_realn.bam 174168661 BAM chimeric harmonized CPTAC3 dd3cc960-8deb-4e8c-8dcf-0407e0febde8 a24a6a999ea2ee9045b4cec9e6cca791 { 'aliquot_tag': 'ALQ_31bedaef', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04013.RNA-Seq.chimeric.T.hg38 C3L-04013 LSCC RNA-Seq tumor CPT0233320009 c0821309-f558-4fd7-8c19-93bdbc7e9304.rna_seq.chimeric.gdc_realn.bam 248318439 BAM chimeric harmonized CPTAC3 23da7d40-4dff-4b1f-a559-00a9b3e1cfcd b195275f3062ac69b9f35ecf439055b5 { 'aliquot_tag': 'ALQ_cdef35f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04013.RNA-Seq.genomic.A.hg38 C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 9871ba67-0e86-4dfb-aa9e-f5bfcc335a89.rna_seq.genomic.gdc_realn.bam 8226544580 BAM genomic harmonized CPTAC3 751f8737-3ac9-4580-a896-73c63287f936 3f5cf34827af063a87557ef061263fdd { 'aliquot_tag': 'ALQ_31bedaef', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04013.RNA-Seq.genomic.A.hg38 C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 9871ba67-0e86-4dfb-aa9e-f5bfcc335a89.rna_seq.genomic.gdc_realn.bam 8226544580 BAM genomic harmonized CPTAC3 970ffa4a-4984-4b9d-9c4e-9e3d8924524e 3f5cf34827af063a87557ef061263fdd { 'aliquot_tag': 'ALQ_31bedaef', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04013.RNA-Seq.genomic.T.hg38 C3L-04013 LSCC RNA-Seq tumor CPT0233320009 c0821309-f558-4fd7-8c19-93bdbc7e9304.rna_seq.genomic.gdc_realn.bam 9214484120 BAM genomic harmonized CPTAC3 3a854c09-9213-45d0-bc40-407f107276f5 2e3738bbc620fb92d4e3a6c219345640 { 'aliquot_tag': 'ALQ_cdef35f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04013.RNA-Seq.R1_L004.T C3L-04013 LSCC RNA-Seq tumor CPT0233320009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 4483331608 FASTQ R1_L004 unaligned CPTAC3 e24c880a-0b28-442b-b725-01e230d25b72 2b97d5d319870d82f5f34e8c85bc4044 { 'aliquot_tag': 'ALQ_cdef35f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04013.RNA-Seq.R1_L008.A C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L008_R1_001.fastq.gz 3931874677 FASTQ R1_L008 unaligned CPTAC3 be7501b0-9269-4db7-9c83-2fd15e5e71cf a86e77434372f9fe52aa2057cc44403a { 'aliquot_tag': 'ALQ_31bedaef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04013.RNA-Seq.R2_L004.T C3L-04013 LSCC RNA-Seq tumor CPT0233320009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 4917643641 FASTQ R2_L004 unaligned CPTAC3 13a7746f-a260-4fe9-9ab8-7d9be7fc0a47 4cf7a6c1da48a7f0888ace4529e53f48 { 'aliquot_tag': 'ALQ_cdef35f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04013.RNA-Seq.R2_L008.A C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L008_R2_001.fastq.gz 4439839166 FASTQ R2_L008 unaligned CPTAC3 2394d37f-55b6-4fe9-b52b-97ea7aa92523 b32c77f32f23ad96a80e18ee33d7585d { 'aliquot_tag': 'ALQ_31bedaef', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04013.RNA-Seq.R1_L004.T C3L-04013 LSCC RNA-Seq tumor CPT0233320009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 4483331608 FASTQ R1_L004 unaligned CPTAC3 e24c880a-0b28-442b-b725-01e230d25b72 2b97d5d319870d82f5f34e8c85bc4044 { 'aliquot_tag': 'ALQ_cdef35f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04013.RNA-Seq.R1_L008.A C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L008_R1_001.fastq.gz 3931874677 FASTQ R1_L008 unaligned CPTAC3 be7501b0-9269-4db7-9c83-2fd15e5e71cf a86e77434372f9fe52aa2057cc44403a { 'aliquot_tag': 'ALQ_31bedaef', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-04013.RNA-Seq.R2_L004.T C3L-04013 LSCC RNA-Seq tumor CPT0233320009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 4917643641 FASTQ R2_L004 unaligned CPTAC3 13a7746f-a260-4fe9-9ab8-7d9be7fc0a47 4cf7a6c1da48a7f0888ace4529e53f48 { 'aliquot_tag': 'ALQ_cdef35f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-04013.RNA-Seq.R2_L008.A C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L008_R2_001.fastq.gz 4439839166 FASTQ R2_L008 unaligned CPTAC3 2394d37f-55b6-4fe9-b52b-97ea7aa92523 b32c77f32f23ad96a80e18ee33d7585d { 'aliquot_tag': 'ALQ_31bedaef', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-04013.RNA-Seq.transcriptome.A.hg38 C3L-04013 LSCC RNA-Seq tissue_normal CPT0233330009 9871ba67-0e86-4dfb-aa9e-f5bfcc335a89.rna_seq.transcriptome.gdc_realn.bam 9820171059 BAM transcriptome harmonized CPTAC3 7df76a2b-9476-4af8-9bae-9d1ff00578f9 1c4898aebecb120400714412d79f9a42 { 'aliquot_tag': 'ALQ_31bedaef', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04013.RNA-Seq.transcriptome.T.hg38 C3L-04013 LSCC RNA-Seq tumor CPT0233320009 c0821309-f558-4fd7-8c19-93bdbc7e9304.rna_seq.transcriptome.gdc_realn.bam 9603735662 BAM transcriptome harmonized CPTAC3 59b85307-3b8e-411b-a0ef-13671d9f99cd 3399f86e1a26ed53d1f60b0f681bc0e6 { 'aliquot_tag': 'ALQ_cdef35f', 'gdc_sample_type': 'Primary Tumor' } C3L-04013.WGS.N C3L-04013 LSCC WGS blood_normal CPT0233440002 CPT0233440002.WholeGenome.RP-1303.bam 63967020461 BAM aligned CPTAC3 98ffabf1-0c54-45ef-ae4c-19c8684ea085 84832f01254047a01d89cfffa60db6fc { 'aliquot_tag': 'ALQ_949efcf', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14488,12 +15370,12 @@ C3L-04014.miRNA-Seq.T C3L-04014 LSCC miRNA-Seq tumor CPT0233600009 190206_UNC31- C3L-04014.miRNA-Seq.T.hg38 C3L-04014 LSCC miRNA-Seq tumor CPT0233600009 51f975d5-0c3e-4dc8-8ea4-169f658516cc_mirnaseq_gdc_realn.bam 219309349 BAM harmonized CPTAC3 f14d343d-0687-41e5-a28e-dff742cd88cf f1ce99711fa2c53031c9ea67b12ca54e { 'aliquot_tag': 'ALQ_26d3318c', 'gdc_sample_type': 'Primary Tumor' } C3L-04014.RNA-Seq.chimeric.A.hg38 C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 b0e5632e-1a27-4d11-8caf-c4dfe28de0e5.rna_seq.chimeric.gdc_realn.bam 375248849 BAM chimeric harmonized CPTAC3 f41d73dd-f7a4-4086-bde6-863455a97143 6854a7fa3d2f35304aaf03cb9ee3c2f3 { 'aliquot_tag': 'ALQ_d353974c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04014.RNA-Seq.chimeric.T.hg38 C3L-04014 LSCC RNA-Seq tumor CPT0233600009 da0b875a-a0b2-48fe-9a46-fa0617776621.rna_seq.chimeric.gdc_realn.bam 244287261 BAM chimeric harmonized CPTAC3 a3562415-48f5-420d-a2fe-bd2cd2575981 1382fe571a192452b9184ea89e38664c { 'aliquot_tag': 'ALQ_26d3318c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04014.RNA-Seq.genomic.A.hg38 C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 b0e5632e-1a27-4d11-8caf-c4dfe28de0e5.rna_seq.genomic.gdc_realn.bam 8848520670 BAM genomic harmonized CPTAC3 c02a0ed2-e790-4434-b2ba-fa038c34e4c2 713ef69245f954a8d9a2ca99c7c7cda7 { 'aliquot_tag': 'ALQ_d353974c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04014.RNA-Seq.genomic.T.hg38 C3L-04014 LSCC RNA-Seq tumor CPT0233600009 da0b875a-a0b2-48fe-9a46-fa0617776621.rna_seq.genomic.gdc_realn.bam 9522546421 BAM genomic harmonized CPTAC3 af93593f-7fcc-41cd-8552-2d26117705e6 7e0292c5a198978eaf082c31df87ded3 { 'aliquot_tag': 'ALQ_26d3318c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04014.RNA-Seq.R1_L004.T C3L-04014 LSCC RNA-Seq tumor CPT0233600009 190208_UNC32-K00270_0146_BH3V2WBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 4286140076 FASTQ R1_L004 unaligned CPTAC3 304b43ab-ba52-45dc-8640-61acc3110fe0 96753b64ccff4b600585570c9dbf4cb2 { 'aliquot_tag': 'ALQ_26d3318c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04014.RNA-Seq.R1_L008.A C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L008_R1_001.fastq.gz 4174954569 FASTQ R1_L008 unaligned CPTAC3 0797d2d1-7873-454b-b4e9-83c063d5bf62 859d92e14ae336bac2ed10add5d49353 { 'aliquot_tag': 'ALQ_d353974c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04014.RNA-Seq.R2_L004.T C3L-04014 LSCC RNA-Seq tumor CPT0233600009 190208_UNC32-K00270_0146_BH3V2WBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 4754186991 FASTQ R2_L004 unaligned CPTAC3 12fa26b4-6d43-4558-b2e7-b76d9ae52077 f737a3de7254b52bb29c2b0a2a14eace { 'aliquot_tag': 'ALQ_26d3318c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04014.RNA-Seq.R2_L008.A C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L008_R2_001.fastq.gz 4668660054 FASTQ R2_L008 unaligned CPTAC3 8ebf4441-88d5-4f17-a826-d63e3c424296 baae4d855668b6bb9d29f90ac90b42f1 { 'aliquot_tag': 'ALQ_d353974c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04014.RNA-Seq.genomic.A.hg38 C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 b0e5632e-1a27-4d11-8caf-c4dfe28de0e5.rna_seq.genomic.gdc_realn.bam 8848520670 BAM genomic harmonized CPTAC3 9e97a9e6-378f-4451-a774-67153c27ee82 713ef69245f954a8d9a2ca99c7c7cda7 { 'aliquot_tag': 'ALQ_d353974c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04014.RNA-Seq.genomic.T.hg38 C3L-04014 LSCC RNA-Seq tumor CPT0233600009 da0b875a-a0b2-48fe-9a46-fa0617776621.rna_seq.genomic.gdc_realn.bam 9522546421 BAM genomic harmonized CPTAC3 0fce155a-ec4e-4443-b325-ff4cd0d86849 7e0292c5a198978eaf082c31df87ded3 { 'aliquot_tag': 'ALQ_26d3318c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04014.RNA-Seq.R1_L004.T C3L-04014 LSCC RNA-Seq tumor CPT0233600009 190208_UNC32-K00270_0146_BH3V2WBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 4286140076 FASTQ R1_L004 unaligned CPTAC3 304b43ab-ba52-45dc-8640-61acc3110fe0 96753b64ccff4b600585570c9dbf4cb2 { 'aliquot_tag': 'ALQ_26d3318c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04014.RNA-Seq.R1_L008.A C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L008_R1_001.fastq.gz 4174954569 FASTQ R1_L008 unaligned CPTAC3 0797d2d1-7873-454b-b4e9-83c063d5bf62 859d92e14ae336bac2ed10add5d49353 { 'aliquot_tag': 'ALQ_d353974c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-04014.RNA-Seq.R2_L004.T C3L-04014 LSCC RNA-Seq tumor CPT0233600009 190208_UNC32-K00270_0146_BH3V2WBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 4754186991 FASTQ R2_L004 unaligned CPTAC3 12fa26b4-6d43-4558-b2e7-b76d9ae52077 f737a3de7254b52bb29c2b0a2a14eace { 'aliquot_tag': 'ALQ_26d3318c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-04014.RNA-Seq.R2_L008.A C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTCAA_S6_L008_R2_001.fastq.gz 4668660054 FASTQ R2_L008 unaligned CPTAC3 8ebf4441-88d5-4f17-a826-d63e3c424296 baae4d855668b6bb9d29f90ac90b42f1 { 'aliquot_tag': 'ALQ_d353974c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-04014.RNA-Seq.transcriptome.A.hg38 C3L-04014 LSCC RNA-Seq tissue_normal CPT0233640009 b0e5632e-1a27-4d11-8caf-c4dfe28de0e5.rna_seq.transcriptome.gdc_realn.bam 9888377751 BAM transcriptome harmonized CPTAC3 12353aee-8bc6-4f37-803d-79182ca198a8 3614dac4710e2c33f024beb3c79d09a5 { 'aliquot_tag': 'ALQ_d353974c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04014.RNA-Seq.transcriptome.T.hg38 C3L-04014 LSCC RNA-Seq tumor CPT0233600009 da0b875a-a0b2-48fe-9a46-fa0617776621.rna_seq.transcriptome.gdc_realn.bam 10852745697 BAM transcriptome harmonized CPTAC3 fcb9f455-f284-4645-ba63-8294cbe54634 beeab08a84ed1a560cc3ba556970cac2 { 'aliquot_tag': 'ALQ_26d3318c', 'gdc_sample_type': 'Primary Tumor' } C3L-04014.WGS.N C3L-04014 LSCC WGS blood_normal CPT0233750002 CPT0233750002.WholeGenome.RP-1303.bam 56691748843 BAM aligned CPTAC3 a54acbb2-6d87-4d73-b2db-185b2751b31f bd1aa8e0e6ecc6797ee3a6fbc51284c4 { 'aliquot_tag': 'ALQ_b2bdb4d1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14516,12 +15398,12 @@ C3L-04025.miRNA-Seq.T C3L-04025 HNSCC miRNA-Seq tumor CPT0256560009 190228_UNC32 C3L-04025.miRNA-Seq.T.hg38 C3L-04025 HNSCC miRNA-Seq tumor CPT0256560009 5ae5b933-19d4-475e-9d1e-ec3b66bc89b1_mirnaseq_gdc_realn.bam 252962371 BAM harmonized CPTAC3 438110b9-0fe5-44b0-b335-764f1eae3d80 3ccfd4a3dadc3fdea905420343fcbbf3 { 'aliquot_tag': 'ALQ_bb5090a2', 'gdc_sample_type': 'Primary Tumor' } C3L-04025.RNA-Seq.chimeric.A.hg38 C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 d57787e3-d57c-4cb1-91e9-32fa9859c13f.rna_seq.chimeric.gdc_realn.bam 27064308 BAM chimeric harmonized CPTAC3 f364a15a-9260-4a32-ba77-107cdcfcbd16 1bc80d0c364315b38b267d645ca3a8a9 { 'aliquot_tag': 'ALQ_59c78e96', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04025.RNA-Seq.chimeric.T.hg38 C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 1a2cbbf1-0a31-4b15-aca4-6f6ff491e571.rna_seq.chimeric.gdc_realn.bam 26164206 BAM chimeric harmonized CPTAC3 e965ab3f-277b-413e-b511-b04a1ca2af09 37d5d73caa3d3e94e329fc2b9355c9df { 'aliquot_tag': 'ALQ_bb5090a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-04025.RNA-Seq.genomic.A.hg38 C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 d57787e3-d57c-4cb1-91e9-32fa9859c13f.rna_seq.genomic.gdc_realn.bam 8328440818 BAM genomic harmonized CPTAC3 83a728f8-4f2a-4591-aa67-e6682a161881 0f441c1bb40078082335c350afe2353f { 'aliquot_tag': 'ALQ_59c78e96', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04025.RNA-Seq.genomic.T.hg38 C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 1a2cbbf1-0a31-4b15-aca4-6f6ff491e571.rna_seq.genomic.gdc_realn.bam 8095245184 BAM genomic harmonized CPTAC3 7fe16997-30f3-4727-9f39-4b8014319460 c0158578b81626c63f4b581b324a77af { 'aliquot_tag': 'ALQ_bb5090a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-04025.RNA-Seq.R1_L005.A C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 190416_UNC32-K00270_0165_AH5JY2BBXY_AAGATACT-ACTTACAT_S17_L005_R1_001.fastq.gz 3972561332 FASTQ R1_L005 unaligned CPTAC3 bb6b636b-ee6d-4c83-af19-845acee3f666 373c80878c2286ae3be8ed80a427a20e { 'aliquot_tag': 'ALQ_59c78e96', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04025.RNA-Seq.R1_L008.T C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 190522_UNC31-K00269_0217_AH7F5MBBXY_TACTCATA-CCTGTGGC_S44_L008_R1_001.fastq.gz 3772549655 FASTQ R1_L008 unaligned CPTAC3 25c1e73d-131b-4d57-a892-e70b305f8760 dbfd61176e63b91adf10285727b12a0e { 'aliquot_tag': 'ALQ_bb5090a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-04025.RNA-Seq.R2_L005.A C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 190416_UNC32-K00270_0165_AH5JY2BBXY_AAGATACT-ACTTACAT_S17_L005_R2_001.fastq.gz 4402378041 FASTQ R2_L005 unaligned CPTAC3 881ceb87-9b07-4451-92b9-ff28e43c68b9 777903dfc6263ad3806d3b0e9959fa63 { 'aliquot_tag': 'ALQ_59c78e96', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04025.RNA-Seq.R2_L008.T C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 190522_UNC31-K00269_0217_AH7F5MBBXY_TACTCATA-CCTGTGGC_S44_L008_R2_001.fastq.gz 4192494749 FASTQ R2_L008 unaligned CPTAC3 d48de247-9938-4802-9862-e1d81c261a25 ea8cd6bb86099c812eb46c67ac5c16fb { 'aliquot_tag': 'ALQ_bb5090a2', 'gdc_sample_type': 'Primary Tumor' } +C3L-04025.RNA-Seq.genomic.A.hg38 C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 d57787e3-d57c-4cb1-91e9-32fa9859c13f.rna_seq.genomic.gdc_realn.bam 8328440818 BAM genomic harmonized CPTAC3 e7490ae1-3eee-465b-96b1-460bebbed516 0f441c1bb40078082335c350afe2353f { 'aliquot_tag': 'ALQ_59c78e96', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04025.RNA-Seq.genomic.T.hg38 C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 1a2cbbf1-0a31-4b15-aca4-6f6ff491e571.rna_seq.genomic.gdc_realn.bam 8095245184 BAM genomic harmonized CPTAC3 768b4f33-88f9-42c6-86b9-4cd763d18db6 c0158578b81626c63f4b581b324a77af { 'aliquot_tag': 'ALQ_bb5090a2', 'gdc_sample_type': 'Primary Tumor' } +C3L-04025.RNA-Seq.R1_L005.A C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 190416_UNC32-K00270_0165_AH5JY2BBXY_AAGATACT-ACTTACAT_S17_L005_R1_001.fastq.gz 3972561332 FASTQ R1_L005 unaligned CPTAC3 bb6b636b-ee6d-4c83-af19-845acee3f666 373c80878c2286ae3be8ed80a427a20e { 'aliquot_tag': 'ALQ_59c78e96', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-04025.RNA-Seq.R1_L008.T C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 190522_UNC31-K00269_0217_AH7F5MBBXY_TACTCATA-CCTGTGGC_S44_L008_R1_001.fastq.gz 3772549655 FASTQ R1_L008 unaligned CPTAC3 25c1e73d-131b-4d57-a892-e70b305f8760 dbfd61176e63b91adf10285727b12a0e { 'aliquot_tag': 'ALQ_bb5090a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04025.RNA-Seq.R2_L005.A C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 190416_UNC32-K00270_0165_AH5JY2BBXY_AAGATACT-ACTTACAT_S17_L005_R2_001.fastq.gz 4402378041 FASTQ R2_L005 unaligned CPTAC3 881ceb87-9b07-4451-92b9-ff28e43c68b9 777903dfc6263ad3806d3b0e9959fa63 { 'aliquot_tag': 'ALQ_59c78e96', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-04025.RNA-Seq.R2_L008.T C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 190522_UNC31-K00269_0217_AH7F5MBBXY_TACTCATA-CCTGTGGC_S44_L008_R2_001.fastq.gz 4192494749 FASTQ R2_L008 unaligned CPTAC3 d48de247-9938-4802-9862-e1d81c261a25 ea8cd6bb86099c812eb46c67ac5c16fb { 'aliquot_tag': 'ALQ_bb5090a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-04025.RNA-Seq.transcriptome.A.hg38 C3L-04025 HNSCC RNA-Seq tissue_normal CPT0256590010 d57787e3-d57c-4cb1-91e9-32fa9859c13f.rna_seq.transcriptome.gdc_realn.bam 11396080353 BAM transcriptome harmonized CPTAC3 a51fa9b7-fbca-4874-bd85-1ac9b132d020 b07f7048655b7c71384ea26b958fcd35 { 'aliquot_tag': 'ALQ_59c78e96', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04025.RNA-Seq.transcriptome.T.hg38 C3L-04025 HNSCC RNA-Seq tumor CPT0256560009 1a2cbbf1-0a31-4b15-aca4-6f6ff491e571.rna_seq.transcriptome.gdc_realn.bam 10511722372 BAM transcriptome harmonized CPTAC3 248787e3-941f-4cf6-b0a9-cf9eb50740bd 3051696fc3b8f4d9c619aaddcfa8984b { 'aliquot_tag': 'ALQ_bb5090a2', 'gdc_sample_type': 'Primary Tumor' } C3L-04025.WGS.N C3L-04025 HNSCC WGS blood_normal CPT0256700002 CPT0256700002.WholeGenome.RP-1303.bam 59644094369 BAM aligned CPTAC3 db5faf5d-1367-4692-ab57-8406c7a3b725 1997073a8a4ffc1168797013d2f9c51d { 'aliquot_tag': 'ALQ_ee0a1d81', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14544,12 +15426,12 @@ C3L-04027.miRNA-Seq.T C3L-04027 PDA miRNA-Seq tumor CPT0254680009 190712_UNC32-K C3L-04027.miRNA-Seq.T.hg38 C3L-04027 PDA miRNA-Seq tumor CPT0254680009 8fa468ba-6f68-4a3b-8353-6ad7586e5bf0_mirnaseq_gdc_realn.bam 222875950 BAM harmonized CPTAC3 38751ca1-10c7-406e-9a12-355dc163b2e1 b89c1b7450f2179945187d1ac1f2f5ae { 'aliquot_tag': 'ALQ_156b4d44', 'gdc_sample_type': 'Primary Tumor' } C3L-04027.RNA-Seq.chimeric.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 d86c91af-2b3f-44a7-965f-4352428824f2.rna_seq.chimeric.gdc_realn.bam 43892609 BAM chimeric harmonized CPTAC3 7671e162-39ee-4707-b0ba-d7f2e6245cb2 b824b316f8053939fc794e665cb40e38 { 'aliquot_tag': 'ALQ_1bc773e0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04027.RNA-Seq.chimeric.T.hg38 C3L-04027 PDA RNA-Seq tumor CPT0254680009 ed77f8f1-2581-40cb-9bfb-409228768c34.rna_seq.chimeric.gdc_realn.bam 38474471 BAM chimeric harmonized CPTAC3 0172c6cc-641f-4a73-bc09-abc7cf91ee76 9339605ee106642ae9c9251b17d701bb { 'aliquot_tag': 'ALQ_156b4d44', 'gdc_sample_type': 'Primary Tumor' } -C3L-04027.RNA-Seq.genomic.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 d86c91af-2b3f-44a7-965f-4352428824f2.rna_seq.genomic.gdc_realn.bam 8411419719 BAM genomic harmonized CPTAC3 a9b2307e-2ac6-442e-991d-757ba1faf80e 5e0671c6711c91976acdd3fc433d8715 { 'aliquot_tag': 'ALQ_1bc773e0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04027.RNA-Seq.genomic.T.hg38 C3L-04027 PDA RNA-Seq tumor CPT0254680009 ed77f8f1-2581-40cb-9bfb-409228768c34.rna_seq.genomic.gdc_realn.bam 8800388359 BAM genomic harmonized CPTAC3 9a49ffe2-fc79-4ae5-8f08-b1a7423d19a1 c0e8f22a34d175ea132b35cbb01802a2 { 'aliquot_tag': 'ALQ_156b4d44', 'gdc_sample_type': 'Primary Tumor' } -C3L-04027.RNA-Seq.R1_L003.A C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 190715_UNC31-K00269_0232_BH7H7CBBXY_TAAGTGGT-CTTAAGCC_S11_L003_R1_001.fastq.gz 4026607218 FASTQ R1_L003 unaligned CPTAC3 33ca49b1-e9ed-4c95-9aeb-bc7aa415b6ef c0d2f0c4bdabb21e4b2914e14f80990a { 'aliquot_tag': 'ALQ_1bc773e0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04027.RNA-Seq.R1_L008.T C3L-04027 PDA RNA-Seq tumor CPT0254680009 190702_UNC32-K00270_0188_BH7CLJBBXY_CATAATAC-TTCTAACG_S31_L008_R1_001.fastq.gz 4004986865 FASTQ R1_L008 unaligned CPTAC3 159e4176-9a7c-44ed-b584-27f8aa02d5ec 174807932287aaa61f06d52ef9f0ed27 { 'aliquot_tag': 'ALQ_156b4d44', 'gdc_sample_type': 'Primary Tumor' } -C3L-04027.RNA-Seq.R2_L003.A C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 190715_UNC31-K00269_0232_BH7H7CBBXY_TAAGTGGT-CTTAAGCC_S11_L003_R2_001.fastq.gz 4271815397 FASTQ R2_L003 unaligned CPTAC3 e779fe94-29bb-40df-bb13-76a013fd2c53 7ea67e9627dd5d293e2f74ee74c9fef5 { 'aliquot_tag': 'ALQ_1bc773e0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04027.RNA-Seq.R2_L008.T C3L-04027 PDA RNA-Seq tumor CPT0254680009 190702_UNC32-K00270_0188_BH7CLJBBXY_CATAATAC-TTCTAACG_S31_L008_R2_001.fastq.gz 4614043434 FASTQ R2_L008 unaligned CPTAC3 fc869480-fca0-4941-919c-2b34633ddda7 09aeb033dcd78a2a84d258026a2f9905 { 'aliquot_tag': 'ALQ_156b4d44', 'gdc_sample_type': 'Primary Tumor' } +C3L-04027.RNA-Seq.genomic.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 d86c91af-2b3f-44a7-965f-4352428824f2.rna_seq.genomic.gdc_realn.bam 8411419719 BAM genomic harmonized CPTAC3 1a68c238-82cb-4860-9dde-1119a76922a8 5e0671c6711c91976acdd3fc433d8715 { 'aliquot_tag': 'ALQ_1bc773e0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04027.RNA-Seq.genomic.T.hg38 C3L-04027 PDA RNA-Seq tumor CPT0254680009 ed77f8f1-2581-40cb-9bfb-409228768c34.rna_seq.genomic.gdc_realn.bam 8800388359 BAM genomic harmonized CPTAC3 0851babd-6826-4626-870c-26881d32880c c0e8f22a34d175ea132b35cbb01802a2 { 'aliquot_tag': 'ALQ_156b4d44', 'gdc_sample_type': 'Primary Tumor' } +C3L-04027.RNA-Seq.R1_L003.A C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 190715_UNC31-K00269_0232_BH7H7CBBXY_TAAGTGGT-CTTAAGCC_S11_L003_R1_001.fastq.gz 4026607218 FASTQ R1_L003 unaligned CPTAC3 33ca49b1-e9ed-4c95-9aeb-bc7aa415b6ef c0d2f0c4bdabb21e4b2914e14f80990a { 'aliquot_tag': 'ALQ_1bc773e0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-04027.RNA-Seq.R1_L008.T C3L-04027 PDA RNA-Seq tumor CPT0254680009 190702_UNC32-K00270_0188_BH7CLJBBXY_CATAATAC-TTCTAACG_S31_L008_R1_001.fastq.gz 4004986865 FASTQ R1_L008 unaligned CPTAC3 159e4176-9a7c-44ed-b584-27f8aa02d5ec 174807932287aaa61f06d52ef9f0ed27 { 'aliquot_tag': 'ALQ_156b4d44', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04027.RNA-Seq.R2_L003.A C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 190715_UNC31-K00269_0232_BH7H7CBBXY_TAAGTGGT-CTTAAGCC_S11_L003_R2_001.fastq.gz 4271815397 FASTQ R2_L003 unaligned CPTAC3 e779fe94-29bb-40df-bb13-76a013fd2c53 7ea67e9627dd5d293e2f74ee74c9fef5 { 'aliquot_tag': 'ALQ_1bc773e0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-04027.RNA-Seq.R2_L008.T C3L-04027 PDA RNA-Seq tumor CPT0254680009 190702_UNC32-K00270_0188_BH7CLJBBXY_CATAATAC-TTCTAACG_S31_L008_R2_001.fastq.gz 4614043434 FASTQ R2_L008 unaligned CPTAC3 fc869480-fca0-4941-919c-2b34633ddda7 09aeb033dcd78a2a84d258026a2f9905 { 'aliquot_tag': 'ALQ_156b4d44', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-04027.RNA-Seq.transcriptome.A.hg38 C3L-04027 PDA RNA-Seq tissue_normal CPT0254740009 d86c91af-2b3f-44a7-965f-4352428824f2.rna_seq.transcriptome.gdc_realn.bam 9252879958 BAM transcriptome harmonized CPTAC3 c3e8efe6-0113-4441-9394-e9057a6e1116 4b936f7c19f5297d4e7d7dbea03eecaa { 'aliquot_tag': 'ALQ_1bc773e0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04027.RNA-Seq.transcriptome.T.hg38 C3L-04027 PDA RNA-Seq tumor CPT0254680009 ed77f8f1-2581-40cb-9bfb-409228768c34.rna_seq.transcriptome.gdc_realn.bam 11795834463 BAM transcriptome harmonized CPTAC3 ca7a4127-6c09-4991-966b-1ac192ec00c8 75c18ce16975a1a222f1641f979fc96d { 'aliquot_tag': 'ALQ_156b4d44', 'gdc_sample_type': 'Primary Tumor' } C3L-04027.Targeted.T C3L-04027 PDA Targeted Sequencing tumor CPT0254680006 CPT0254680006.CustomSelection.RP-1303.PDO-18786.bam 6138985544 BAM aligned CPTAC3 1618bc31-7741-441b-ba00-6ae12dc8b0f4 00675eb4c7ce3826951f121faba36bdf { 'aliquot_tag': 'ALQ_85d450d5', 'gdc_sample_type': 'Primary Tumor' } @@ -14572,16 +15454,16 @@ C3L-04031.miRNA-Seq.A C3L-04031 LUAD miRNA-Seq tissue_normal CPT0231570009 19072 C3L-04031.miRNA-Seq.A.hg38 C3L-04031 LUAD miRNA-Seq tissue_normal CPT0231570009 e5595e5e-cba5-43d2-b94c-a55116af1be5_mirnaseq_gdc_realn.bam 188722329 BAM harmonized CPTAC3 6fd0c3c1-1429-4b94-8137-6dc80fb66420 81ead90b7d3acba02fca30599ce40306 { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04031.miRNA-Seq.T C3L-04031 LUAD miRNA-Seq tumor CPT0231560009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTAGCT_S47_L004_R1_001.unaln.bam 254790091 BAM unaligned CPTAC3 d79fd4e1-0ced-4969-b340-3aca62523081 eb2df97c7928d67bade9d289df59cc0b { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor' } C3L-04031.miRNA-Seq.T.hg38 C3L-04031 LUAD miRNA-Seq tumor CPT0231560009 e5436ff8-2f6c-4793-89a8-635e0b890f9a_mirnaseq_gdc_realn.bam 278810527 BAM harmonized CPTAC3 962c8f8e-3f6f-4197-b19a-f7b0c774df11 9fae290555e756c04917fcea44fe88ac { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor' } -C3L-04031.RNA-Seq.chimeric.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 037c1418-e209-46f5-9bd8-7e3b1e988bad.rna_seq.chimeric.gdc_realn.bam 32400137 BAM chimeric harmonized CPTAC3 08ab136c-53f1-4fe2-99f8-5d9dd8d00610 d581c2ee4b2160d688bd50de8afd0605 { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04031.RNA-Seq.chimeric.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 a0f078cc-8210-400d-8a55-3a43ea30f974.rna_seq.chimeric.gdc_realn.bam 38591739 BAM chimeric harmonized CPTAC3 6e08cc7b-d143-4280-a1b3-430f32eadc6d 178bd037c9d5879db7e1d3be696a958c { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor' } -C3L-04031.RNA-Seq.genomic.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 037c1418-e209-46f5-9bd8-7e3b1e988bad.rna_seq.genomic.gdc_realn.bam 12295129665 BAM genomic harmonized CPTAC3 80168880-100c-4479-af73-ed72a124a199 845c01bcacb58c5bbe4a89cbe6897ff6 { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04031.RNA-Seq.genomic.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 a0f078cc-8210-400d-8a55-3a43ea30f974.rna_seq.genomic.gdc_realn.bam 10626341937 BAM genomic harmonized CPTAC3 91277eef-96a4-4593-9b87-588501afeeed 96c2c6dbb1bd9b31773696f1a4b686aa { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor' } -C3L-04031.RNA-Seq.R1_L005.T C3L-04031 LUAD RNA-Seq tumor CPT0231560009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTACGACA-GAGTCCAA_S18_L005_R1_001.fastq.gz 3896751344 FASTQ R1_L005 unaligned CPTAC3 67545b35-6742-4f5c-9ef2-2ec80f0d27bd e74a0249068045e0873a14a1528a085f { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor' } -C3L-04031.RNA-Seq.R1_L006.A C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 190607_UNC32-K00270_0179_BH75W2BBXY_AAGTCCAA-TATGAGTA_S24_L006_R1_001.fastq.gz 3943143348 FASTQ R1_L006 unaligned CPTAC3 4badec9a-98c7-43fc-8dfa-828927ffa92e 2706548f013b47186678f9c90c7d6906 { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04031.RNA-Seq.R2_L005.T C3L-04031 LUAD RNA-Seq tumor CPT0231560009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTACGACA-GAGTCCAA_S18_L005_R2_001.fastq.gz 4489910121 FASTQ R2_L005 unaligned CPTAC3 f71f9ac2-aa7f-445c-93b5-fb2b4f45fc8a 1016680bd06c29057bbd8ee2f04c605c { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor' } -C3L-04031.RNA-Seq.R2_L006.A C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 190607_UNC32-K00270_0179_BH75W2BBXY_AAGTCCAA-TATGAGTA_S24_L006_R2_001.fastq.gz 4308999867 FASTQ R2_L006 unaligned CPTAC3 4a2fa41f-d043-4dcc-b5a9-2ba1ad1ca9f5 a2125019bce29818b1c83a72d0a77bc1 { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04031.RNA-Seq.transcriptome.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 037c1418-e209-46f5-9bd8-7e3b1e988bad.rna_seq.transcriptome.gdc_realn.bam 6794474526 BAM transcriptome harmonized CPTAC3 cfdd8b7a-dc8b-47cc-9570-81a6681ca8d4 3c59d0a0aa0ebf0ab319b552ee453784 { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04031.RNA-Seq.transcriptome.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 a0f078cc-8210-400d-8a55-3a43ea30f974.rna_seq.transcriptome.gdc_realn.bam 8185533999 BAM transcriptome harmonized CPTAC3 22e71604-cfa0-4abe-9dff-901b7bc14573 028e8d7ca2af97c2795bfc17d955d2cd { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor' } +C3L-04031.RNA-Seq.chimeric.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 84775b1f-4b84-4090-aa22-81c8abcfa19b.rna_seq.chimeric.gdc_realn.bam 32389701 BAM chimeric harmonized CPTAC3 d32ec039-4598-4052-96fd-9ab145c31d79 7ab35444e579d6e6609107ce78f748cb { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04031.RNA-Seq.chimeric.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 8bb7f15f-babf-4d3a-abc6-c858efb80e36.rna_seq.chimeric.gdc_realn.bam 38582937 BAM chimeric harmonized CPTAC3 2ed3fd49-05b0-4b5d-a873-cf4e02733138 3dcecdb779c816fc98f3f5d2a41aef7a { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor' } +C3L-04031.RNA-Seq.genomic.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 84775b1f-4b84-4090-aa22-81c8abcfa19b.rna_seq.genomic.gdc_realn.bam 12296855433 BAM genomic harmonized CPTAC3 7a1e9d59-ad78-4abf-bae0-3632dc194b1a 5af26076ca72124071c1e0d35fda0898 { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04031.RNA-Seq.genomic.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 8bb7f15f-babf-4d3a-abc6-c858efb80e36.rna_seq.genomic.gdc_realn.bam 10626828053 BAM genomic harmonized CPTAC3 b707cdea-b93f-41d9-885a-4ae3b4a0db17 86093bf64936f2ebe7548ba802cbe9b8 { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor' } +C3L-04031.RNA-Seq.R1_L005.T C3L-04031 LUAD RNA-Seq tumor CPT0231560009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTACGACA-GAGTCCAA_S18_L005_R1_001.fastq.gz 3896751344 FASTQ R1_L005 unaligned CPTAC3 67545b35-6742-4f5c-9ef2-2ec80f0d27bd e74a0249068045e0873a14a1528a085f { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04031.RNA-Seq.R1_L006.A C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 190607_UNC32-K00270_0179_BH75W2BBXY_AAGTCCAA-TATGAGTA_S24_L006_R1_001.fastq.gz 3943143348 FASTQ R1_L006 unaligned CPTAC3 4badec9a-98c7-43fc-8dfa-828927ffa92e 2706548f013b47186678f9c90c7d6906 { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-04031.RNA-Seq.R2_L005.T C3L-04031 LUAD RNA-Seq tumor CPT0231560009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTACGACA-GAGTCCAA_S18_L005_R2_001.fastq.gz 4489910121 FASTQ R2_L005 unaligned CPTAC3 f71f9ac2-aa7f-445c-93b5-fb2b4f45fc8a 1016680bd06c29057bbd8ee2f04c605c { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-04031.RNA-Seq.R2_L006.A C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 190607_UNC32-K00270_0179_BH75W2BBXY_AAGTCCAA-TATGAGTA_S24_L006_R2_001.fastq.gz 4308999867 FASTQ R2_L006 unaligned CPTAC3 4a2fa41f-d043-4dcc-b5a9-2ba1ad1ca9f5 a2125019bce29818b1c83a72d0a77bc1 { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-04031.RNA-Seq.transcriptome.A.hg38 C3L-04031 LUAD RNA-Seq tissue_normal CPT0231570009 84775b1f-4b84-4090-aa22-81c8abcfa19b.rna_seq.transcriptome.gdc_realn.bam 7661656193 BAM transcriptome harmonized CPTAC3 8edd6aed-4f17-4008-afee-4e17cd42d060 7b61a886125d1a22a581c1f972d8233e { 'aliquot_tag': 'ALQ_85f88e1b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04031.RNA-Seq.transcriptome.T.hg38 C3L-04031 LUAD RNA-Seq tumor CPT0231560009 8bb7f15f-babf-4d3a-abc6-c858efb80e36.rna_seq.transcriptome.gdc_realn.bam 9271311573 BAM transcriptome harmonized CPTAC3 6b41749c-93e3-4fa5-92ab-14c168198539 fd1ee9529ddcf084597dd8ca1922779d { 'aliquot_tag': 'ALQ_b898a7ab', 'gdc_sample_type': 'Primary Tumor' } C3L-04031.WGS.N C3L-04031 LUAD WGS blood_normal CPT0231680002 CPT0231680002.WholeGenome.RP-1303.bam 54040017237 BAM aligned CPTAC3 8d0a290c-e3a9-4746-b947-d3be5c8870ef aea202502c21227aea70abbb13a242c2 { 'aliquot_tag': 'ALQ_16eeb2ec', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04031.WGS.N.hg38 C3L-04031 LUAD WGS blood_normal CPT0231680002 24f3d373-0410-47e5-aa5f-bcbf375f4c9d_wgs_gdc_realn.bam 78339955639 BAM harmonized CPTAC3 213efcaf-8209-49ae-a5d3-66951067b715 2b4493ab1b8448146692fc309f1b47d6 { 'aliquot_tag': 'ALQ_16eeb2ec', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04031.WGS.T C3L-04031 LUAD WGS tumor CPT0231560006 CPT0231560006.WholeGenome.RP-1303.bam 58069692834 BAM aligned CPTAC3 dac23237-a218-44b7-8466-00d06e2ec8b0 134187f28dbc7133464d8845b38ad61d { 'aliquot_tag': 'ALQ_2827ba3a', 'gdc_sample_type': 'Primary Tumor' } @@ -14600,16 +15482,16 @@ C3L-04033.miRNA-Seq.A C3L-04033 LUAD miRNA-Seq tissue_normal CPT0231410009 19072 C3L-04033.miRNA-Seq.A.hg38 C3L-04033 LUAD miRNA-Seq tissue_normal CPT0231410009 518fe22c-b2ec-4587-858b-71ef7698fb53_mirnaseq_gdc_realn.bam 204225693 BAM harmonized CPTAC3 c02b1b7d-6c21-41a3-acaf-1d93aef81ed3 7f871770c8c4dd7044fd42cbade01096 { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04033.miRNA-Seq.T C3L-04033 LUAD miRNA-Seq tumor CPT0231350010 190722_UNC31-K00269_0234_AH7VGTBBXY_CGGAAT_S31_L004_R1_001.unaln.bam 325214854 BAM unaligned CPTAC3 699ccaf0-c37d-40ed-b04e-ecf1b9139059 59b817e958171c59a71c7214b3226b71 { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor' } C3L-04033.miRNA-Seq.T.hg38 C3L-04033 LUAD miRNA-Seq tumor CPT0231350010 93079195-edf4-4cee-89f2-d79f0d37885c_mirnaseq_gdc_realn.bam 356066021 BAM harmonized CPTAC3 9b40edc8-082f-41cd-b724-a1e5a718887d 5aa5d9e40fafc87b13f659bedc1e8d3e { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor' } -C3L-04033.RNA-Seq.chimeric.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 288b2e21-fd44-49ef-84e3-1fe994567ee2.rna_seq.chimeric.gdc_realn.bam 35043573 BAM chimeric harmonized CPTAC3 c1a7da70-79c1-4f4f-9e43-850fc6c544bf d3a570a950683951532a4ab4b03ce12d { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04033.RNA-Seq.chimeric.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 7e49a2b4-9522-4209-99a2-f8d2c3d0da5f.rna_seq.chimeric.gdc_realn.bam 44763787 BAM chimeric harmonized CPTAC3 e75c7aac-2b2c-441a-8477-0fd8c6c84cfd 8e098d69d3ce536c07479aeff2b71d20 { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor' } -C3L-04033.RNA-Seq.genomic.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 288b2e21-fd44-49ef-84e3-1fe994567ee2.rna_seq.genomic.gdc_realn.bam 9516120608 BAM genomic harmonized CPTAC3 0004c6a0-1392-43e6-92c4-1d4181c5d21b 84548df83ac6b6aa6b486785067cceb3 { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04033.RNA-Seq.genomic.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 7e49a2b4-9522-4209-99a2-f8d2c3d0da5f.rna_seq.genomic.gdc_realn.bam 12430507006 BAM genomic harmonized CPTAC3 7bd27705-2944-4ca5-a926-cb680c973701 2b82ccc00c869cb9509708dc8124dd7e { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor' } -C3L-04033.RNA-Seq.R1_L005.T C3L-04033 LUAD RNA-Seq tumor CPT0231350010 190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R1_001.fastq.gz 4616701026 FASTQ R1_L005 unaligned CPTAC3 20b3406b-826a-46d1-a8e6-55e7c9431014 000f7905d6a7b230d2698fc83b77d1c1 { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor' } -C3L-04033.RNA-Seq.R1_L006.A C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 190607_UNC32-K00270_0179_BH75W2BBXY_GGACTTGG-CGCAGACG_S21_L006_R1_001.fastq.gz 3579229932 FASTQ R1_L006 unaligned CPTAC3 6f380e61-6b00-4376-87c6-6813ecbe4e78 8eee1e451d0e80513de24722e21427a2 { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04033.RNA-Seq.R2_L005.T C3L-04033 LUAD RNA-Seq tumor CPT0231350010 190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R2_001.fastq.gz 5366115132 FASTQ R2_L005 unaligned CPTAC3 a865155a-4759-416f-a3d1-366b0397caf2 b37b3dc19da0ff70f49b105f93c91b4b { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor' } -C3L-04033.RNA-Seq.R2_L006.A C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 190607_UNC32-K00270_0179_BH75W2BBXY_GGACTTGG-CGCAGACG_S21_L006_R2_001.fastq.gz 3981553315 FASTQ R2_L006 unaligned CPTAC3 e8886846-49e3-430a-bcd5-7f40e1cc1523 89351b8f682a9d1850cb1290bea181b6 { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04033.RNA-Seq.transcriptome.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 288b2e21-fd44-49ef-84e3-1fe994567ee2.rna_seq.transcriptome.gdc_realn.bam 6465425936 BAM transcriptome harmonized CPTAC3 91b09588-2aa6-4f18-8dab-f504d6a0abaf ab31cea53e19918da0c837a0152cb7b7 { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04033.RNA-Seq.transcriptome.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 7e49a2b4-9522-4209-99a2-f8d2c3d0da5f.rna_seq.transcriptome.gdc_realn.bam 9590780466 BAM transcriptome harmonized CPTAC3 c01daa00-591f-46b9-a17c-cbd77f6b9f38 b2f783a852c494e22f52d4bd7c473eb5 { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor' } +C3L-04033.RNA-Seq.chimeric.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 222ece51-e527-4d3d-b09c-b2e816a52d89.rna_seq.chimeric.gdc_realn.bam 35038477 BAM chimeric harmonized CPTAC3 703f86c2-0877-42a8-accf-3c21440e2019 170b5dcd1e43e5d16779c51ad1941a0c { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04033.RNA-Seq.chimeric.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 17131c68-cbbb-453a-86c2-6688955807e3.rna_seq.chimeric.gdc_realn.bam 44740598 BAM chimeric harmonized CPTAC3 2f74eb92-9129-4371-96be-186fafe93bcc fbf14c82a3d94cc463d57ed5a8c3248b { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor' } +C3L-04033.RNA-Seq.genomic.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 222ece51-e527-4d3d-b09c-b2e816a52d89.rna_seq.genomic.gdc_realn.bam 9516878293 BAM genomic harmonized CPTAC3 86edb82c-bbe3-406b-8832-2a059b876e83 db5b5cf51b0d5b76d6150c551741b931 { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04033.RNA-Seq.genomic.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 17131c68-cbbb-453a-86c2-6688955807e3.rna_seq.genomic.gdc_realn.bam 12431704962 BAM genomic harmonized CPTAC3 d38664b0-a95a-4dba-b098-a68d364b8208 94d6ab0223bd014a2a3bbef18fb9d7ac { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor' } +C3L-04033.RNA-Seq.R1_L005.T C3L-04033 LUAD RNA-Seq tumor CPT0231350010 190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R1_001.fastq.gz 4616701026 FASTQ R1_L005 unaligned CPTAC3 20b3406b-826a-46d1-a8e6-55e7c9431014 000f7905d6a7b230d2698fc83b77d1c1 { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04033.RNA-Seq.R1_L006.A C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 190607_UNC32-K00270_0179_BH75W2BBXY_GGACTTGG-CGCAGACG_S21_L006_R1_001.fastq.gz 3579229932 FASTQ R1_L006 unaligned CPTAC3 6f380e61-6b00-4376-87c6-6813ecbe4e78 8eee1e451d0e80513de24722e21427a2 { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-04033.RNA-Seq.R2_L005.T C3L-04033 LUAD RNA-Seq tumor CPT0231350010 190604_UNC32-K00270_0177_AH7F5VBBXY_TCGTAGTG-AGACTTGG_S19_L005_R2_001.fastq.gz 5366115132 FASTQ R2_L005 unaligned CPTAC3 a865155a-4759-416f-a3d1-366b0397caf2 b37b3dc19da0ff70f49b105f93c91b4b { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-04033.RNA-Seq.R2_L006.A C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 190607_UNC32-K00270_0179_BH75W2BBXY_GGACTTGG-CGCAGACG_S21_L006_R2_001.fastq.gz 3981553315 FASTQ R2_L006 unaligned CPTAC3 e8886846-49e3-430a-bcd5-7f40e1cc1523 89351b8f682a9d1850cb1290bea181b6 { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-04033.RNA-Seq.transcriptome.A.hg38 C3L-04033 LUAD RNA-Seq tissue_normal CPT0231410009 222ece51-e527-4d3d-b09c-b2e816a52d89.rna_seq.transcriptome.gdc_realn.bam 7284989532 BAM transcriptome harmonized CPTAC3 96191992-1190-4fbb-b6a3-64400d4a537b e6dd35a73311c50d8eb385021e1efba2 { 'aliquot_tag': 'ALQ_c1e4a81e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04033.RNA-Seq.transcriptome.T.hg38 C3L-04033 LUAD RNA-Seq tumor CPT0231350010 17131c68-cbbb-453a-86c2-6688955807e3.rna_seq.transcriptome.gdc_realn.bam 10813366621 BAM transcriptome harmonized CPTAC3 2063299b-df72-4322-9710-6c947809f9c1 a735d1e801a4ebc03d276834a127e687 { 'aliquot_tag': 'ALQ_49a6b783', 'gdc_sample_type': 'Primary Tumor' } C3L-04033.WGS.N C3L-04033 LUAD WGS blood_normal CPT0231510002 CPT0231510002.WholeGenome.RP-1303.bam 74862218332 BAM aligned CPTAC3 907076ab-2aca-49bf-8284-32fe5f5f4c69 4d33c4cd54c344e01cc3b7c2acd7eb7d { 'aliquot_tag': 'ALQ_9d6aa233', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04033.WGS.N.hg38 C3L-04033 LUAD WGS blood_normal CPT0231510002 dafd7df7-0e5d-4241-bf8c-c487a3c6f039_wgs_gdc_realn.bam 110484584784 BAM harmonized CPTAC3 d518c8a1-808a-4417-b48b-154524b0e81d 6c3ee2c74f2324fb60a345271868c351 { 'aliquot_tag': 'ALQ_9d6aa233', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04033.WGS.T C3L-04033 LUAD WGS tumor CPT0231350007 CPT0231350007.WholeGenome.RP-1303.bam 63746393683 BAM aligned CPTAC3 9c5711ec-7fd1-466d-9be7-001e6bd51567 b1e5a41254b025a1c21393f6aa5f5e81 { 'aliquot_tag': 'ALQ_ced91361', 'gdc_sample_type': 'Primary Tumor' } @@ -14624,11 +15506,11 @@ C3L-04036.MethArray.Green.T C3L-04036 GBM Methylation Array tumor CPT0228100006 C3L-04036.MethArray.Red.T C3L-04036 GBM Methylation Array tumor CPT0228100006 204367490056_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 fc1c77e5-7703-4100-b663-c11561492241 351825c81bee656f396fffdceb28ceed { 'aliquot_tag': 'ALQ_65c448c1', 'gdc_sample_type': 'Primary Tumor' } C3L-04036.miRNA-Seq.T C3L-04036 GBM miRNA-Seq tumor CPT0228100013 200403_UNC31-K00269_0274_AHCF7GBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 231628336 BAM unaligned CPTAC3 0cb1fa8c-049f-4fb9-a6b0-14caf66a4c89 7b4c3cf3366bb40a18a2c73e28377009 { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor' } C3L-04036.miRNA-Seq.T.hg38 C3L-04036 GBM miRNA-Seq tumor CPT0228100013 4a878582-42a5-4ea9-aa7f-92e81a823fb5_mirnaseq_gdc_realn.bam 261066376 BAM harmonized CPTAC3 9fe7adc5-5c84-4e2a-b9c8-c71e924a05d5 ec212574e36605b4c363dbc0c4273913 { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04036.RNA-Seq.chimeric.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 773595a3-f616-4fc0-a489-8609f09ffc76.rna_seq.chimeric.gdc_realn.bam 31150145 BAM chimeric harmonized CPTAC3 f85a70d6-0ba7-4cde-a63a-0b768e946e4f 0bc65d4f1b35a3c2071ab48ff7563f93 { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04036.RNA-Seq.genomic.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 773595a3-f616-4fc0-a489-8609f09ffc76.rna_seq.genomic.gdc_realn.bam 8946117829 BAM genomic harmonized CPTAC3 788d43ae-025b-49c5-8df2-210e1ba25ee2 a1668d3c29bb7c2e2e179284b027af7c { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04036.RNA-Seq.R1_L005.T C3L-04036 GBM RNA-Seq tumor CPT0228100013 200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R1_001.fastq.gz 4300016107 FASTQ R1_L005 unaligned CPTAC3 4ad5e390-ef2e-4370-a0fa-de8d0c112f8b 2e4c2075b60020d26b10507eaa4e17f4 { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04036.RNA-Seq.R2_L005.T C3L-04036 GBM RNA-Seq tumor CPT0228100013 200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R2_001.fastq.gz 4686361595 FASTQ R2_L005 unaligned CPTAC3 180a4380-addf-4a1a-98bd-e75a7b5982da bfe895f8895e2dda867559468bd276a4 { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04036.RNA-Seq.transcriptome.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 773595a3-f616-4fc0-a489-8609f09ffc76.rna_seq.transcriptome.gdc_realn.bam 9907911702 BAM transcriptome harmonized CPTAC3 b18f81fc-f40e-4350-952e-52515f402f81 70d78598b1417f935adf1e1672ba622a { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04036.RNA-Seq.chimeric.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 f1d581f6-9361-4c90-ba5e-5631341a10a4.rna_seq.chimeric.gdc_realn.bam 31121772 BAM chimeric harmonized CPTAC3 669eb8b1-6af8-4691-b172-e0e764844311 b768a97ae115e1d166b5a1b599079ede { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04036.RNA-Seq.genomic.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 f1d581f6-9361-4c90-ba5e-5631341a10a4.rna_seq.genomic.gdc_realn.bam 8947107855 BAM genomic harmonized CPTAC3 13eff63b-b954-4bfe-b6eb-86989912ea35 714e45c49fbe9ea43150eea542000cae { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04036.RNA-Seq.R1_L005.T C3L-04036 GBM RNA-Seq tumor CPT0228100013 200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R1_001.fastq.gz 4300016107 FASTQ R1_L005 unaligned CPTAC3 4ad5e390-ef2e-4370-a0fa-de8d0c112f8b 2e4c2075b60020d26b10507eaa4e17f4 { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04036.RNA-Seq.R2_L005.T C3L-04036 GBM RNA-Seq tumor CPT0228100013 200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R2_001.fastq.gz 4686361595 FASTQ R2_L005 unaligned CPTAC3 180a4380-addf-4a1a-98bd-e75a7b5982da bfe895f8895e2dda867559468bd276a4 { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-04036.RNA-Seq.transcriptome.T.hg38 C3L-04036 GBM RNA-Seq tumor CPT0228100013 f1d581f6-9361-4c90-ba5e-5631341a10a4.rna_seq.transcriptome.gdc_realn.bam 11357149863 BAM transcriptome harmonized CPTAC3 4011bdd2-cf0a-4255-83f3-e77b6a9ac24f 84c15f8f39281aed035d86aab8463c58 { 'aliquot_tag': 'ALQ_cb58d0f', 'gdc_sample_type': 'Primary Tumor' } C3L-04036.WGS.N C3L-04036 GBM WGS blood_normal CPT0228200002 CPT0228200002.WholeGenome.RP-2158.bam 27954573868 BAM aligned CPTAC3 4614d7be-dcff-4e9a-b51a-2a14ca2a0707 43d0a8587a3e8c3f8f943083729c2304 { 'aliquot_tag': 'ALQ_e43dfe76', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04036.WGS.N.hg38 C3L-04036 GBM WGS blood_normal CPT0228200002 d5e843de-676d-4f6b-ae84-2dc2e7a6d2f6_wgs_gdc_realn.bam 84600612482 BAM harmonized CPTAC3 5cc05bff-59ba-46d5-a94b-f2ce494057d0 c7043a90936f5152ce75c5999e5eed82 { 'aliquot_tag': 'ALQ_e43dfe76', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04036.WGS.T C3L-04036 GBM WGS tumor CPT0228100006 CPT0228100006.WholeGenome.RP-2158.bam 26788664741 BAM aligned CPTAC3 ea0a6535-4d05-4a3f-b835-1431971ebd4d d3e14718e545057ae4380f06ccb1d4da { 'aliquot_tag': 'ALQ_65c448c1', 'gdc_sample_type': 'Primary Tumor' } @@ -14643,16 +15525,16 @@ C3L-04037.miRNA-Seq.A C3L-04037 LUAD miRNA-Seq tissue_normal CPT0229570006 19072 C3L-04037.miRNA-Seq.A.hg38 C3L-04037 LUAD miRNA-Seq tissue_normal CPT0229570006 226aab75-5af5-4c0f-a81b-633e3f5afca4_mirnaseq_gdc_realn.bam 202031039 BAM harmonized CPTAC3 94660b34-5aca-489d-9f4a-2973c0f489b7 ceb002f26b85381c41a176198f3d09f8 { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04037.miRNA-Seq.T C3L-04037 LUAD miRNA-Seq tumor CPT0229540010 190722_UNC31-K00269_0234_AH7VGTBBXY_CCAACA_S30_L004_R1_001.unaln.bam 182160196 BAM unaligned CPTAC3 40f958ec-ca43-439c-a0a2-7b67b6b9015b 42e9c73e63399f9bbceb392b6cebdd35 { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor' } C3L-04037.miRNA-Seq.T.hg38 C3L-04037 LUAD miRNA-Seq tumor CPT0229540010 557feab8-8acc-4503-9739-f58117e798f2_mirnaseq_gdc_realn.bam 201032117 BAM harmonized CPTAC3 58cf4c63-c2b1-4fd3-a67f-9530f6d3f754 7feabba4077d9ec29c71ecf317a0ffbe { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04037.RNA-Seq.chimeric.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 7443c545-4d70-4f17-b90c-0bd83de50e34.rna_seq.chimeric.gdc_realn.bam 21968541 BAM chimeric harmonized CPTAC3 6fd75636-77bf-49da-9845-5d370db1516d 217366aff6e7f3a95e8bad7dce8c4609 { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04037.RNA-Seq.chimeric.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 59440f04-9a2c-4ac5-bee3-fd1bd94066b2.rna_seq.chimeric.gdc_realn.bam 37206743 BAM chimeric harmonized CPTAC3 f2a30835-0ea6-49d7-bc92-806317d39ad9 90a515688612b6e210300bf6f91a0711 { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04037.RNA-Seq.genomic.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 7443c545-4d70-4f17-b90c-0bd83de50e34.rna_seq.genomic.gdc_realn.bam 10054446267 BAM genomic harmonized CPTAC3 c00ece8d-7bcb-4436-8a54-64c4992171fe 0c9973a1a3af337bf95ea92e05915d1d { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04037.RNA-Seq.genomic.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 59440f04-9a2c-4ac5-bee3-fd1bd94066b2.rna_seq.genomic.gdc_realn.bam 13330558177 BAM genomic harmonized CPTAC3 7fa08612-f868-4d21-8321-2244fd7916dd dabb11e45b19afc4aa989a0982b19bea { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04037.RNA-Seq.R1_L006.T C3L-04037 LUAD RNA-Seq tumor CPT0229540010 190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R1_001.fastq.gz 4443614863 FASTQ R1_L006 unaligned CPTAC3 20ce4060-9f88-4c4a-8cd6-1686f5924208 0162ce9d13d37f37514dafee2190deb2 { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04037.RNA-Seq.R1_L007.A C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R1_001.fastq.gz 3456382054 FASTQ R1_L007 unaligned CPTAC3 f4b5d44d-2940-459d-9c29-ed2e26f03a5f 0fff04d854f774a74f6a1a189148275c { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04037.RNA-Seq.R2_L006.T C3L-04037 LUAD RNA-Seq tumor CPT0229540010 190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R2_001.fastq.gz 4973554677 FASTQ R2_L006 unaligned CPTAC3 1cdf4feb-6bae-499f-bc7c-c40ceb20f771 f1a2a5a7f2cc20195a046af524d06b00 { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04037.RNA-Seq.R2_L007.A C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R2_001.fastq.gz 3796085160 FASTQ R2_L007 unaligned CPTAC3 16095216-8046-4e3f-a7de-1846f17d9a36 4c12a88fc79b4b6a935d3012771a9a93 { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04037.RNA-Seq.transcriptome.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 7443c545-4d70-4f17-b90c-0bd83de50e34.rna_seq.transcriptome.gdc_realn.bam 6656700033 BAM transcriptome harmonized CPTAC3 34201f80-f92f-4477-b71a-98363d8c86a1 f6a73f1a8b3adb5b5472acd63904a3c7 { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04037.RNA-Seq.transcriptome.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 59440f04-9a2c-4ac5-bee3-fd1bd94066b2.rna_seq.transcriptome.gdc_realn.bam 11707146318 BAM transcriptome harmonized CPTAC3 b6a093e0-dbb6-4c44-a5cd-da277e6bcd55 05fce5a1f7c31875483edbcc01d212c1 { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04037.RNA-Seq.chimeric.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 0f0e63a5-8fb4-4c94-9e83-8c76e2a8f1f7.rna_seq.chimeric.gdc_realn.bam 21962025 BAM chimeric harmonized CPTAC3 56a05fd4-9b5f-4a7b-ae17-e7c1739ddfeb 9f228a83c2ea39a185a1a5b73ad2b8bc { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04037.RNA-Seq.chimeric.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 badf091f-bd7f-4a4f-9c29-67b09c32a920.rna_seq.chimeric.gdc_realn.bam 37194066 BAM chimeric harmonized CPTAC3 3bff7fb1-3f4a-4778-89e6-7f0046322bf5 6bb3336927c7cddda3aaa7d3b1237409 { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04037.RNA-Seq.genomic.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 0f0e63a5-8fb4-4c94-9e83-8c76e2a8f1f7.rna_seq.genomic.gdc_realn.bam 10055068882 BAM genomic harmonized CPTAC3 c481531e-8501-4116-9841-81192d5c47c2 d0a5e4bcac00397002b40b9241ff1328 { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04037.RNA-Seq.genomic.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 badf091f-bd7f-4a4f-9c29-67b09c32a920.rna_seq.genomic.gdc_realn.bam 13331768144 BAM genomic harmonized CPTAC3 09415abc-854f-42cf-b367-5d9cce12f97f 96fa6a585d8b2c3b39f999d4a8c5d905 { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04037.RNA-Seq.R1_L006.T C3L-04037 LUAD RNA-Seq tumor CPT0229540010 190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R1_001.fastq.gz 4443614863 FASTQ R1_L006 unaligned CPTAC3 20ce4060-9f88-4c4a-8cd6-1686f5924208 0162ce9d13d37f37514dafee2190deb2 { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-04037.RNA-Seq.R1_L007.A C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R1_001.fastq.gz 3456382054 FASTQ R1_L007 unaligned CPTAC3 f4b5d44d-2940-459d-9c29-ed2e26f03a5f 0fff04d854f774a74f6a1a189148275c { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-04037.RNA-Seq.R2_L006.T C3L-04037 LUAD RNA-Seq tumor CPT0229540010 190604_UNC32-K00270_0177_AH7F5VBBXY_GATTCTGC-GACGAGAG_S24_L006_R2_001.fastq.gz 4973554677 FASTQ R2_L006 unaligned CPTAC3 1cdf4feb-6bae-499f-bc7c-c40ceb20f771 f1a2a5a7f2cc20195a046af524d06b00 { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-04037.RNA-Seq.R2_L007.A C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 190607_UNC32-K00270_0178_AH773TBBXY_ATTGTGAA-TGCATTGC_S28_L007_R2_001.fastq.gz 3796085160 FASTQ R2_L007 unaligned CPTAC3 16095216-8046-4e3f-a7de-1846f17d9a36 4c12a88fc79b4b6a935d3012771a9a93 { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-04037.RNA-Seq.transcriptome.A.hg38 C3L-04037 LUAD RNA-Seq tissue_normal CPT0229570006 0f0e63a5-8fb4-4c94-9e83-8c76e2a8f1f7.rna_seq.transcriptome.gdc_realn.bam 7520087024 BAM transcriptome harmonized CPTAC3 d83f7e17-c5a0-4e5e-919e-bd046130c1cb fb117a628ad831ab5740f25124dee9f4 { 'aliquot_tag': 'ALQ_ea02dd73', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04037.RNA-Seq.transcriptome.T.hg38 C3L-04037 LUAD RNA-Seq tumor CPT0229540010 badf091f-bd7f-4a4f-9c29-67b09c32a920.rna_seq.transcriptome.gdc_realn.bam 13261306906 BAM transcriptome harmonized CPTAC3 f9ddbcab-c739-4350-9e74-fc0e32dfff05 33d43476e21e6b12611c0cae9d019bee { 'aliquot_tag': 'ALQ_5dda33d7', 'gdc_sample_type': 'Primary Tumor' } C3L-04037.WGS.N C3L-04037 LUAD WGS blood_normal CPT0229680002 CPT0229680002.WholeGenome.RP-1303.bam 66335745227 BAM aligned CPTAC3 a2dccb7c-d270-4f83-94e1-f1f7b81c8caf 1f9144cfa4ba1d512afabc9078bcd1d9 { 'aliquot_tag': 'ALQ_e9abfc15', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04037.WGS.N.hg38 C3L-04037 LUAD WGS blood_normal CPT0229680002 4b9d7cb8-05e7-499d-838a-fdf63a4a93ad_wgs_gdc_realn.bam 97452630425 BAM harmonized CPTAC3 968471ea-9f9c-41c3-af74-b7bf3b22cd75 e4ec89aa2a60cd6dcc8ecadb00a6ab95 { 'aliquot_tag': 'ALQ_e9abfc15', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04037.WGS.T C3L-04037 LUAD WGS tumor CPT0229540007 CPT0229540007.WholeGenome.RP-1303.bam 75274750636 BAM aligned CPTAC3 60d3a2c3-06d6-4827-a4d9-1d114d965fd0 59ae444d9da31a9e9af59afb640ac8f1 { 'aliquot_tag': 'ALQ_daa59735', 'gdc_sample_type': 'Primary Tumor' } @@ -14665,11 +15547,11 @@ C3L-04038.MethArray.Green.T C3L-04038 GBM Methylation Array tumor CPT0256720007 C3L-04038.MethArray.Red.T C3L-04038 GBM Methylation Array tumor CPT0256720007 204372030090_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 73a53eb1-7efb-4085-8b36-f1d074197b16 698ce1b148b413adac778782648860b5 { 'aliquot_tag': 'ALQ_e4a0ba6e', 'gdc_sample_type': 'Primary Tumor' } C3L-04038.miRNA-Seq.T C3L-04038 GBM miRNA-Seq tumor CPT0256720010 200403_UNC31-K00269_0274_AHCF7GBBXY_CTTGTA_S36_L002_R1_001.unaln.bam 178241410 BAM unaligned CPTAC3 c3536cfa-1998-4132-ba94-0f410cc2ca04 026e29295b9954392fbf04bd8deb4fa0 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor' } C3L-04038.miRNA-Seq.T.hg38 C3L-04038 GBM miRNA-Seq tumor CPT0256720010 7dd51466-f17c-4da6-afd8-5bfb2986eccc_mirnaseq_gdc_realn.bam 198964432 BAM harmonized CPTAC3 2eb20cbb-3808-4d16-83bb-f7e01ca86189 3daa578b646dcf0e99a2486578370ec8 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04038.RNA-Seq.chimeric.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 8518c8ed-d854-4604-9d42-c7969d02bb4f.rna_seq.chimeric.gdc_realn.bam 207896677 BAM chimeric harmonized CPTAC3 eeb5fb67-ea97-48c1-bc7e-372ca4f5c8d6 16c5ab4d000c7b3b367d511a55ef1bd9 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04038.RNA-Seq.genomic.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 8518c8ed-d854-4604-9d42-c7969d02bb4f.rna_seq.genomic.gdc_realn.bam 7518490162 BAM genomic harmonized CPTAC3 be00e005-45d6-4cc0-98ba-f0a1fd061d59 25e81924a61c57b1c40724e10515d304 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04038.RNA-Seq.R1_L001.T C3L-04038 GBM RNA-Seq tumor CPT0256720010 200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R1_001.fastq.gz 3057017289 FASTQ R1_L001 unaligned CPTAC3 4b1047c2-0ebd-425a-bbb5-558034d20ee0 bb8a984b5978f1dfd65d46ddd4302b12 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04038.RNA-Seq.R2_L001.T C3L-04038 GBM RNA-Seq tumor CPT0256720010 200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R2_001.fastq.gz 3685939739 FASTQ R2_L001 unaligned CPTAC3 432fbf58-dc9c-45c4-aad4-ccb291b8c512 bae98b409546c90f3f354cab2a324e21 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04038.RNA-Seq.transcriptome.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 8518c8ed-d854-4604-9d42-c7969d02bb4f.rna_seq.transcriptome.gdc_realn.bam 6144420526 BAM transcriptome harmonized CPTAC3 edd1fd93-6187-4d93-b6bd-9536d2112d77 add335f6c7355b3d17f94fef143f09a0 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04038.RNA-Seq.chimeric.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 1a8d12a2-8bff-41b8-90d0-cbff56ce2554.rna_seq.chimeric.gdc_realn.bam 207873040 BAM chimeric harmonized CPTAC3 dd032e6b-11b7-4318-a6d6-54710b880c68 e85a8383afc6c1212b0d593406a190d8 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04038.RNA-Seq.genomic.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 1a8d12a2-8bff-41b8-90d0-cbff56ce2554.rna_seq.genomic.gdc_realn.bam 7519214609 BAM genomic harmonized CPTAC3 62756f36-2cda-4421-9915-60ed3185c0cf ef357d603f49d585c51e73c9dd236db8 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04038.RNA-Seq.R1_L001.T C3L-04038 GBM RNA-Seq tumor CPT0256720010 200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R1_001.fastq.gz 3057017289 FASTQ R1_L001 unaligned CPTAC3 4b1047c2-0ebd-425a-bbb5-558034d20ee0 bb8a984b5978f1dfd65d46ddd4302b12 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04038.RNA-Seq.R2_L001.T C3L-04038 GBM RNA-Seq tumor CPT0256720010 200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R2_001.fastq.gz 3685939739 FASTQ R2_L001 unaligned CPTAC3 432fbf58-dc9c-45c4-aad4-ccb291b8c512 bae98b409546c90f3f354cab2a324e21 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04038.RNA-Seq.transcriptome.T.hg38 C3L-04038 GBM RNA-Seq tumor CPT0256720010 1a8d12a2-8bff-41b8-90d0-cbff56ce2554.rna_seq.transcriptome.gdc_realn.bam 6975839557 BAM transcriptome harmonized CPTAC3 33ae4a94-d011-41f5-aac2-9d7729a89824 4d71eec19b49f3a5ba3ed24141ad3bb8 { 'aliquot_tag': 'ALQ_63df1e8c', 'gdc_sample_type': 'Primary Tumor' } C3L-04038.WGS.N C3L-04038 GBM WGS blood_normal CPT0256820002 CPT0256820002.WholeGenome.RP-2158.bam 25899155371 BAM aligned CPTAC3 e05914be-d79b-4d2a-943d-e2ffa3f8f761 f768b769ad4bcea9b24a17d14078c8c6 { 'aliquot_tag': 'ALQ_659cfc34', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04038.WGS.N.hg38 C3L-04038 GBM WGS blood_normal CPT0256820002 e5fa0684-79a6-4278-a7cf-29880b9ce537_wgs_gdc_realn.bam 78286150186 BAM harmonized CPTAC3 21d14944-67f4-4d0c-bfd5-ab7986f4c4c5 8dcc84c678d031574684437ad13a9c1e { 'aliquot_tag': 'ALQ_659cfc34', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04038.WGS.T C3L-04038 GBM WGS tumor CPT0256720007 CPT0256720007.WholeGenome.RP-2158.bam 28044770829 BAM aligned CPTAC3 80ca3087-4bf6-4b8c-8f8e-58e43b23a65a c74534c6baced44d6f40d2e258cea9e6 { 'aliquot_tag': 'ALQ_e4a0ba6e', 'gdc_sample_type': 'Primary Tumor' } @@ -14682,11 +15564,11 @@ C3L-04040.MethArray.Green.T C3L-04040 LUAD Methylation Array tumor CPT0232060007 C3L-04040.MethArray.Red.T C3L-04040 LUAD Methylation Array tumor CPT0232060007 203561450099_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 408b4b68-6703-44b6-aee4-78bfdbd59773 8377f0c91819d61e445d2eeafec7ff0b { 'aliquot_tag': 'ALQ_3e050182', 'gdc_sample_type': 'Primary Tumor' } C3L-04040.miRNA-Seq.T C3L-04040 LUAD miRNA-Seq tumor CPT0232060010 190722_UNC31-K00269_0234_AH7VGTBBXY_CTCAGA_S33_L004_R1_001.unaln.bam 195919013 BAM unaligned CPTAC3 3848f7e6-5630-4da2-80e2-95dc378b59f2 fbdcc60cbecfd47301b615d526ece895 { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor' } C3L-04040.miRNA-Seq.T.hg38 C3L-04040 LUAD miRNA-Seq tumor CPT0232060010 3b5d4942-68e9-43d6-8f2d-969f14c1fbfd_mirnaseq_gdc_realn.bam 216073600 BAM harmonized CPTAC3 9b780344-ac90-4b71-85ec-0934335f5c68 8d2da8fe56c4615800d13d4762b6fc0f { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor' } -C3L-04040.RNA-Seq.chimeric.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 5ec0b2aa-2587-4313-992a-4884611b39c2.rna_seq.chimeric.gdc_realn.bam 31876393 BAM chimeric harmonized CPTAC3 12eef102-0f1f-4808-8e54-365c5b3b1300 2f8aa4d73c09b846172756c36ed86d3d { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor' } -C3L-04040.RNA-Seq.genomic.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 5ec0b2aa-2587-4313-992a-4884611b39c2.rna_seq.genomic.gdc_realn.bam 12028633511 BAM genomic harmonized CPTAC3 57e6c2f5-5540-4f39-a7a9-4d7708bf9970 d536778857a06f6ebe29ac8d03d99661 { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor' } -C3L-04040.RNA-Seq.R1_L005.T C3L-04040 LUAD RNA-Seq tumor CPT0232060010 190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R1_001.fastq.gz 4182858994 FASTQ R1_L005 unaligned CPTAC3 03bcaf6e-b2aa-4eba-82ab-3d3138ff4bff cb6b31ddb5f5a3ea0a3374760d8fa1e7 { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor' } -C3L-04040.RNA-Seq.R2_L005.T C3L-04040 LUAD RNA-Seq tumor CPT0232060010 190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R2_001.fastq.gz 4821163674 FASTQ R2_L005 unaligned CPTAC3 5a047da7-59a1-41f5-9ec1-728f230c506b 56a7e45e4b07f77c1b3f34a44e3e9c4f { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor' } -C3L-04040.RNA-Seq.transcriptome.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 5ec0b2aa-2587-4313-992a-4884611b39c2.rna_seq.transcriptome.gdc_realn.bam 8905511604 BAM transcriptome harmonized CPTAC3 22f0c3d0-cd84-448b-9fe0-542573e2c386 e63cbf9e4cadc0712a836ba108f5272c { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor' } +C3L-04040.RNA-Seq.chimeric.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 7b4a07f9-f648-4c84-ac57-f742456352b7.rna_seq.chimeric.gdc_realn.bam 31871501 BAM chimeric harmonized CPTAC3 6b84db1f-80e0-4d5f-9d69-dddd445f0979 2e23b4ebecceea6a1d7ef5604123935b { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor' } +C3L-04040.RNA-Seq.genomic.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 7b4a07f9-f648-4c84-ac57-f742456352b7.rna_seq.genomic.gdc_realn.bam 12029819325 BAM genomic harmonized CPTAC3 ea54302e-60f1-48c6-98ab-779bead38ae1 164bde4219c6482b6b7a3ffae1b80c8a { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor' } +C3L-04040.RNA-Seq.R1_L005.T C3L-04040 LUAD RNA-Seq tumor CPT0232060010 190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R1_001.fastq.gz 4182858994 FASTQ R1_L005 unaligned CPTAC3 03bcaf6e-b2aa-4eba-82ab-3d3138ff4bff cb6b31ddb5f5a3ea0a3374760d8fa1e7 { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04040.RNA-Seq.R2_L005.T C3L-04040 LUAD RNA-Seq tumor CPT0232060010 190604_UNC32-K00270_0177_AH7F5VBBXY_CGGACAAC-TCCGGATT_S20_L005_R2_001.fastq.gz 4821163674 FASTQ R2_L005 unaligned CPTAC3 5a047da7-59a1-41f5-9ec1-728f230c506b 56a7e45e4b07f77c1b3f34a44e3e9c4f { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-04040.RNA-Seq.transcriptome.T.hg38 C3L-04040 LUAD RNA-Seq tumor CPT0232060010 7b4a07f9-f648-4c84-ac57-f742456352b7.rna_seq.transcriptome.gdc_realn.bam 9989857381 BAM transcriptome harmonized CPTAC3 4e04d662-f4ee-4f74-86b2-f9fafcd32899 65fdc04200a1efda61ebf0a26389c4f8 { 'aliquot_tag': 'ALQ_b97aa560', 'gdc_sample_type': 'Primary Tumor' } C3L-04040.WGS.N C3L-04040 LUAD WGS blood_normal CPT0232220002 CPT0232220002.WholeGenome.RP-1303.bam 75127227326 BAM aligned CPTAC3 16084dc4-83d6-4c1b-a93d-d648b0c7a84d aecfab551f658f7880cc9703f9157992 { 'aliquot_tag': 'ALQ_f627f2c6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04040.WGS.N.hg38 C3L-04040 LUAD WGS blood_normal CPT0232220002 3125ce10-eeb2-4a71-9101-3576d527d1a7_wgs_gdc_realn.bam 110179630465 BAM harmonized CPTAC3 5a57d417-33b4-49ee-bdd1-afd8fbbd7f2f dea63130391cee587bd0c07886d8a93d { 'aliquot_tag': 'ALQ_f627f2c6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04040.WGS.T C3L-04040 LUAD WGS tumor CPT0232060007 CPT0232060007.WholeGenome.RP-1303.bam 78991614747 BAM aligned CPTAC3 8701800d-a7cc-498e-acdc-1455ea7b7ae9 c91bddf9515572a422065f202bbff18a { 'aliquot_tag': 'ALQ_3e050182', 'gdc_sample_type': 'Primary Tumor' } @@ -14705,12 +15587,12 @@ C3L-04071.miRNA-Seq.T C3L-04071 LSCC miRNA-Seq tumor CPT0221200009 190206_UNC31- C3L-04071.miRNA-Seq.T.hg38 C3L-04071 LSCC miRNA-Seq tumor CPT0221200009 4bf84c57-5998-4523-baba-060a37b8674f_mirnaseq_gdc_realn.bam 166820565 BAM harmonized CPTAC3 4cccdb42-fd1e-4c74-a4f5-13587558090f aaaf533f9a55f8e10eaaa1bf6a96e84e { 'aliquot_tag': 'ALQ_e677622d', 'gdc_sample_type': 'Primary Tumor' } C3L-04071.RNA-Seq.chimeric.A.hg38 C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 785e3f2a-37d8-4cfa-a6f3-e08fd04a677f.rna_seq.chimeric.gdc_realn.bam 107127253 BAM chimeric harmonized CPTAC3 2c134722-2869-46e9-8f0e-4273a47c1bfe b27c2779889c67ca3531c3adc9f05f44 { 'aliquot_tag': 'ALQ_9cb7314d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04071.RNA-Seq.chimeric.T.hg38 C3L-04071 LSCC RNA-Seq tumor CPT0221200009 2c76e0e5-8a5c-4edf-9812-3f5e296ba2a6.rna_seq.chimeric.gdc_realn.bam 143747850 BAM chimeric harmonized CPTAC3 24068f4b-ff56-4351-9dbf-c3aef829590d c745b8bccc3e42808dfb28db461b2452 { 'aliquot_tag': 'ALQ_e677622d', 'gdc_sample_type': 'Primary Tumor' } -C3L-04071.RNA-Seq.genomic.A.hg38 C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 785e3f2a-37d8-4cfa-a6f3-e08fd04a677f.rna_seq.genomic.gdc_realn.bam 8076144383 BAM genomic harmonized CPTAC3 2ee60010-bb19-4290-8900-da036bca84bb 51eeb30ea510565839804171dc347926 { 'aliquot_tag': 'ALQ_9cb7314d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04071.RNA-Seq.genomic.T.hg38 C3L-04071 LSCC RNA-Seq tumor CPT0221200009 2c76e0e5-8a5c-4edf-9812-3f5e296ba2a6.rna_seq.genomic.gdc_realn.bam 15571520279 BAM genomic harmonized CPTAC3 e14aa062-0fec-4b6a-9dba-0f961affdfff c1be89da0ef09517ccfcf4205f304a90 { 'aliquot_tag': 'ALQ_e677622d', 'gdc_sample_type': 'Primary Tumor' } -C3L-04071.RNA-Seq.R1_L003.T C3L-04071 LSCC RNA-Seq tumor CPT0221200009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L003_R1_001.fastq.gz 6951487565 FASTQ R1_L003 unaligned CPTAC3 a558614c-7e6d-4b94-9755-9e0fa0b9901a 386e665a2cf395c7e693a61cd87f88b6 { 'aliquot_tag': 'ALQ_e677622d', 'gdc_sample_type': 'Primary Tumor' } -C3L-04071.RNA-Seq.R1_L008.A C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3212017003 FASTQ R1_L008 unaligned CPTAC3 0cf40994-b735-414b-9779-e4b18f9009d5 40865fff718ea3e9d243b73143121a6e { 'aliquot_tag': 'ALQ_9cb7314d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04071.RNA-Seq.R2_L003.T C3L-04071 LSCC RNA-Seq tumor CPT0221200009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L003_R2_001.fastq.gz 7527528669 FASTQ R2_L003 unaligned CPTAC3 b7cd0e96-3009-444e-b5ff-e339fdca5aa7 63fcc24f361e0f8a18190d52b7aba380 { 'aliquot_tag': 'ALQ_e677622d', 'gdc_sample_type': 'Primary Tumor' } -C3L-04071.RNA-Seq.R2_L008.A C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 3614110640 FASTQ R2_L008 unaligned CPTAC3 7476ad07-0f47-4459-921a-3f37129a47a3 53529f958cb6bb8a30463d85016bcaea { 'aliquot_tag': 'ALQ_9cb7314d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04071.RNA-Seq.genomic.A.hg38 C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 785e3f2a-37d8-4cfa-a6f3-e08fd04a677f.rna_seq.genomic.gdc_realn.bam 8076144383 BAM genomic harmonized CPTAC3 83ed5d65-013c-4fef-b84e-0c33b9a38f26 51eeb30ea510565839804171dc347926 { 'aliquot_tag': 'ALQ_9cb7314d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04071.RNA-Seq.genomic.T.hg38 C3L-04071 LSCC RNA-Seq tumor CPT0221200009 2c76e0e5-8a5c-4edf-9812-3f5e296ba2a6.rna_seq.genomic.gdc_realn.bam 15571520279 BAM genomic harmonized CPTAC3 fc8b2936-7478-441f-9f7d-fc12a4e93f5f c1be89da0ef09517ccfcf4205f304a90 { 'aliquot_tag': 'ALQ_e677622d', 'gdc_sample_type': 'Primary Tumor' } +C3L-04071.RNA-Seq.R1_L003.T C3L-04071 LSCC RNA-Seq tumor CPT0221200009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L003_R1_001.fastq.gz 6951487565 FASTQ R1_L003 unaligned CPTAC3 a558614c-7e6d-4b94-9755-9e0fa0b9901a 386e665a2cf395c7e693a61cd87f88b6 { 'aliquot_tag': 'ALQ_e677622d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-04071.RNA-Seq.R1_L008.A C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3212017003 FASTQ R1_L008 unaligned CPTAC3 0cf40994-b735-414b-9779-e4b18f9009d5 40865fff718ea3e9d243b73143121a6e { 'aliquot_tag': 'ALQ_9cb7314d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-04071.RNA-Seq.R2_L003.T C3L-04071 LSCC RNA-Seq tumor CPT0221200009 190205_UNC32-K00270_0144_BH3M3NBBXY_TGACCA_S12_L003_R2_001.fastq.gz 7527528669 FASTQ R2_L003 unaligned CPTAC3 b7cd0e96-3009-444e-b5ff-e339fdca5aa7 63fcc24f361e0f8a18190d52b7aba380 { 'aliquot_tag': 'ALQ_e677622d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-04071.RNA-Seq.R2_L008.A C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 3614110640 FASTQ R2_L008 unaligned CPTAC3 7476ad07-0f47-4459-921a-3f37129a47a3 53529f958cb6bb8a30463d85016bcaea { 'aliquot_tag': 'ALQ_9cb7314d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3L-04071.RNA-Seq.transcriptome.A.hg38 C3L-04071 LSCC RNA-Seq tissue_normal CPT0221220009 785e3f2a-37d8-4cfa-a6f3-e08fd04a677f.rna_seq.transcriptome.gdc_realn.bam 8576238516 BAM transcriptome harmonized CPTAC3 a7082210-5a40-4b4c-85ef-19d7001ecd64 bb9c88f51431c29785745028971da548 { 'aliquot_tag': 'ALQ_9cb7314d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04071.RNA-Seq.transcriptome.T.hg38 C3L-04071 LSCC RNA-Seq tumor CPT0221200009 2c76e0e5-8a5c-4edf-9812-3f5e296ba2a6.rna_seq.transcriptome.gdc_realn.bam 16512761947 BAM transcriptome harmonized CPTAC3 81e7ae12-a221-44d4-8675-ee2d3c937425 059d90a8d20e42921289dd8a832f7d1f { 'aliquot_tag': 'ALQ_e677622d', 'gdc_sample_type': 'Primary Tumor' } C3L-04071.WGS.N C3L-04071 LSCC WGS blood_normal CPT0220490002 CPT0220490002.WholeGenome.RP-1303.bam 64119487686 BAM aligned CPTAC3 82acc8a7-ca5f-497f-9bd7-7de44023f8ab 24abbedb6736ef78eb93fab978d91337 { 'aliquot_tag': 'ALQ_c9b317d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14731,12 +15613,12 @@ C3L-04072.miRNA-Seq.T C3L-04072 PDA miRNA-Seq tumor CPT0221240010 190813_UNC32-K C3L-04072.miRNA-Seq.T.hg38 C3L-04072 PDA miRNA-Seq tumor CPT0221240010 aac3a103-654d-4401-b99c-5ca7da7f909e_mirnaseq_gdc_realn.bam 268481879 BAM harmonized CPTAC3 d561aaca-5cd8-404a-892b-538beec472af 7bb74012f1e4ced62bd92a4ecf79642c { 'aliquot_tag': 'ALQ_73304d08', 'gdc_sample_type': 'Primary Tumor' } C3L-04072.RNA-Seq.chimeric.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 1faa7190-7787-4b8e-ac42-28ae65cd346d.rna_seq.chimeric.gdc_realn.bam 43701221 BAM chimeric harmonized CPTAC3 4558bd0f-87d2-4e32-96c6-f64fd52ff38a 9c41ba78ea05d56254fa2decb6075ca5 { 'aliquot_tag': 'ALQ_c92fc05a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04072.RNA-Seq.chimeric.T.hg38 C3L-04072 PDA RNA-Seq tumor CPT0221240010 8f95f643-5ff0-45ff-bbbc-bd112ffed36e.rna_seq.chimeric.gdc_realn.bam 140357915 BAM chimeric harmonized CPTAC3 a424dae8-8591-47f5-9214-b0e9be3ca67b 06fb8f28cf40dbb7cee94a875904a9e9 { 'aliquot_tag': 'ALQ_73304d08', 'gdc_sample_type': 'Primary Tumor' } -C3L-04072.RNA-Seq.genomic.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 1faa7190-7787-4b8e-ac42-28ae65cd346d.rna_seq.genomic.gdc_realn.bam 10049068458 BAM genomic harmonized CPTAC3 64338a71-1a10-4e3e-868e-76aad41b7982 27c2562cff10916cb6d907bcd34cc60a { 'aliquot_tag': 'ALQ_c92fc05a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04072.RNA-Seq.genomic.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 1faa7190-7787-4b8e-ac42-28ae65cd346d.rna_seq.genomic.gdc_realn.bam 10049068458 BAM genomic harmonized CPTAC3 42a4b1f3-006d-42e9-986f-f4d9c931021b 27c2562cff10916cb6d907bcd34cc60a { 'aliquot_tag': 'ALQ_c92fc05a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04072.RNA-Seq.genomic.T.hg38 C3L-04072 PDA RNA-Seq tumor CPT0221240010 8f95f643-5ff0-45ff-bbbc-bd112ffed36e.rna_seq.genomic.gdc_realn.bam 8484129318 BAM genomic harmonized CPTAC3 461063b4-c84b-4c65-84c4-ca5423e1263b c187878d8c4257d86359aa31084bb53b { 'aliquot_tag': 'ALQ_73304d08', 'gdc_sample_type': 'Primary Tumor' } -C3L-04072.RNA-Seq.R1_L001.T C3L-04072 PDA RNA-Seq tumor CPT0221240010 190725_UNC32-K00270_0194_AH7HHFBBXY_GGTGAACC-GCGTTGGA_S3_L001_R1_001.fastq.gz 3281861542 FASTQ R1_L001 unaligned CPTAC3 3e143830-c835-4410-86c9-3519bc46ee9f 433df9e30654677fd3026a468f61b2c0 { 'aliquot_tag': 'ALQ_73304d08', 'gdc_sample_type': 'Primary Tumor' } -C3L-04072.RNA-Seq.R1_L004.A C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTTAGAA-TTCAGGTC_S13_L004_R1_001.fastq.gz 4567399648 FASTQ R1_L004 unaligned CPTAC3 6384d98c-0431-454c-bfbe-02a0eeb169f7 4e52c481371f342dc1845a7833634bb6 { 'aliquot_tag': 'ALQ_c92fc05a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04072.RNA-Seq.R2_L001.T C3L-04072 PDA RNA-Seq tumor CPT0221240010 190725_UNC32-K00270_0194_AH7HHFBBXY_GGTGAACC-GCGTTGGA_S3_L001_R2_001.fastq.gz 3203441845 FASTQ R2_L001 unaligned CPTAC3 69a69920-dac4-4d05-803c-a89a1b444820 8d3c4b00b2cbd79a054a05c0578b015f { 'aliquot_tag': 'ALQ_73304d08', 'gdc_sample_type': 'Primary Tumor' } -C3L-04072.RNA-Seq.R2_L004.A C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTTAGAA-TTCAGGTC_S13_L004_R2_001.fastq.gz 5302939594 FASTQ R2_L004 unaligned CPTAC3 4f81c80b-93d0-4e4a-96e6-137b1e2dd16b f16271839dce14fb279d250fec9647d1 { 'aliquot_tag': 'ALQ_c92fc05a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04072.RNA-Seq.R1_L001.T C3L-04072 PDA RNA-Seq tumor CPT0221240010 190725_UNC32-K00270_0194_AH7HHFBBXY_GGTGAACC-GCGTTGGA_S3_L001_R1_001.fastq.gz 3281861542 FASTQ R1_L001 unaligned CPTAC3 3e143830-c835-4410-86c9-3519bc46ee9f 433df9e30654677fd3026a468f61b2c0 { 'aliquot_tag': 'ALQ_73304d08', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04072.RNA-Seq.R1_L004.A C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTTAGAA-TTCAGGTC_S13_L004_R1_001.fastq.gz 4567399648 FASTQ R1_L004 unaligned CPTAC3 6384d98c-0431-454c-bfbe-02a0eeb169f7 4e52c481371f342dc1845a7833634bb6 { 'aliquot_tag': 'ALQ_c92fc05a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-04072.RNA-Seq.R2_L001.T C3L-04072 PDA RNA-Seq tumor CPT0221240010 190725_UNC32-K00270_0194_AH7HHFBBXY_GGTGAACC-GCGTTGGA_S3_L001_R2_001.fastq.gz 3203441845 FASTQ R2_L001 unaligned CPTAC3 69a69920-dac4-4d05-803c-a89a1b444820 8d3c4b00b2cbd79a054a05c0578b015f { 'aliquot_tag': 'ALQ_73304d08', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04072.RNA-Seq.R2_L004.A C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGTTAGAA-TTCAGGTC_S13_L004_R2_001.fastq.gz 5302939594 FASTQ R2_L004 unaligned CPTAC3 4f81c80b-93d0-4e4a-96e6-137b1e2dd16b f16271839dce14fb279d250fec9647d1 { 'aliquot_tag': 'ALQ_c92fc05a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-04072.RNA-Seq.transcriptome.A.hg38 C3L-04072 PDA RNA-Seq tissue_normal CPT0221250007 1faa7190-7787-4b8e-ac42-28ae65cd346d.rna_seq.transcriptome.gdc_realn.bam 12475385233 BAM transcriptome harmonized CPTAC3 12936492-5be7-4724-97a9-04075a9d870c d0fb74d0d2c26a38a2fc82c2204e03ac { 'aliquot_tag': 'ALQ_c92fc05a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04072.RNA-Seq.transcriptome.T.hg38 C3L-04072 PDA RNA-Seq tumor CPT0221240010 8f95f643-5ff0-45ff-bbbc-bd112ffed36e.rna_seq.transcriptome.gdc_realn.bam 7090139619 BAM transcriptome harmonized CPTAC3 f8940b99-6a5b-4718-a084-478e93644617 84ce77a88ed2ce52fa004d1595ff235d { 'aliquot_tag': 'ALQ_73304d08', 'gdc_sample_type': 'Primary Tumor' } C3L-04072.Targeted.T C3L-04072 PDA Targeted Sequencing tumor CPT0221240007 CPT0221240007.CustomSelection.RP-1303.PDO-18786.bam 5683060183 BAM aligned CPTAC3 acea7c01-62b7-465e-9de4-5d81429affad 4aacb524547fba1968680af2f17ade4f { 'aliquot_tag': 'ALQ_f44fe9ea', 'gdc_sample_type': 'Primary Tumor' } @@ -14757,16 +15639,16 @@ C3L-04079.miRNA-Seq.A C3L-04079 LSCC miRNA-Seq tissue_normal CPT0304140009 20032 C3L-04079.miRNA-Seq.A.hg38 C3L-04079 LSCC miRNA-Seq tissue_normal CPT0304140009 c61c2663-c4a6-4f22-9a3e-8c88cdd6fef4_mirnaseq_gdc_realn.bam 289223267 BAM harmonized CPTAC3 1f096955-4765-4ed7-8b70-aac094bce777 7afbf7fb320b9752d9ae48bf3211c3da { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04079.miRNA-Seq.T C3L-04079 LSCC miRNA-Seq tumor CPT0304120009 200224_UNC31-K00269_0267_AHC722BBXY_GATCAG_S9_L008_R1_001.unaln.bam 206680936 BAM unaligned CPTAC3 3b77d0cd-51c2-4f06-97d2-4ce4492633d7 47e81999372a81cccc4d764d2dee43f7 { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor' } C3L-04079.miRNA-Seq.T.hg38 C3L-04079 LSCC miRNA-Seq tumor CPT0304120009 5aae3bcc-53d6-42c6-b76a-413f4e8f8942_mirnaseq_gdc_realn.bam 229476333 BAM harmonized CPTAC3 f53d5b80-32d6-4c25-801d-789b9f117d4e b384c9dbc66b216cd2e1bbcd65a59922 { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04079.RNA-Seq.chimeric.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 34e88fb5-9b45-4192-9c43-95851deeabe9.rna_seq.chimeric.gdc_realn.bam 63311004 BAM chimeric harmonized CPTAC3 b4149187-ce52-40ca-b3a4-372b91682b3f b3cabb198280c450233bf8b954576acf { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04079.RNA-Seq.chimeric.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 bbe9381e-f1e5-49e1-b804-432dc12726c4.rna_seq.chimeric.gdc_realn.bam 34137177 BAM chimeric harmonized CPTAC3 52ee5086-db62-4db9-b391-85a0ac866663 70e05f83021bdfad918a80b8514650bb { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04079.RNA-Seq.genomic.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 34e88fb5-9b45-4192-9c43-95851deeabe9.rna_seq.genomic.gdc_realn.bam 8129010803 BAM genomic harmonized CPTAC3 e0d29cae-f398-447e-b796-6cff2858d115 acf530300731c051ac1f30de0f45213e { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04079.RNA-Seq.genomic.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 bbe9381e-f1e5-49e1-b804-432dc12726c4.rna_seq.genomic.gdc_realn.bam 7854828882 BAM genomic harmonized CPTAC3 8fc260b9-f03e-4922-b945-55746f8b173b 218e131fcf6a75b4acbd1521ae57ee15 { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04079.RNA-Seq.R1_L003.T C3L-04079 LSCC RNA-Seq tumor CPT0304120009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L003_R1_001.fastq.gz 3690093354 FASTQ R1_L003 unaligned CPTAC3 2815a18f-e1ba-45de-a67e-2ac1988ec582 cead2c5c835ab34e38da6f24e600dc49 { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04079.RNA-Seq.R1_L008.A C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTAGCGCT-GTGTAGAC_S32_L008_R1_001.fastq.gz 4129549202 FASTQ R1_L008 unaligned CPTAC3 6889624b-4f29-4f47-a3b2-2614c9f55cb9 a630d74eaea2c4f2ec566adc2cbf1ef8 { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04079.RNA-Seq.R2_L003.T C3L-04079 LSCC RNA-Seq tumor CPT0304120009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L003_R2_001.fastq.gz 3997440822 FASTQ R2_L003 unaligned CPTAC3 10844c0d-45f2-4b34-a035-a4f108e93efc 656cd059003417fe8b652915cb6a6e2c { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04079.RNA-Seq.R2_L008.A C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTAGCGCT-GTGTAGAC_S32_L008_R2_001.fastq.gz 4228325182 FASTQ R2_L008 unaligned CPTAC3 c4d4d9f5-28a6-43fc-a0dd-8a5012893224 6873503e3b668d4a98454c6e6c8c093c { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04079.RNA-Seq.transcriptome.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 34e88fb5-9b45-4192-9c43-95851deeabe9.rna_seq.transcriptome.gdc_realn.bam 8838349475 BAM transcriptome harmonized CPTAC3 fd886a29-0783-47c8-aa18-3ac5d42dae07 54df042a0e15920ea7ed5ac036839cc7 { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04079.RNA-Seq.transcriptome.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 bbe9381e-f1e5-49e1-b804-432dc12726c4.rna_seq.transcriptome.gdc_realn.bam 8888366173 BAM transcriptome harmonized CPTAC3 7424401b-0cd8-4200-9ca0-529fd5c4ce5e 8af86e34731b6661ba60dc6fb242c510 { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04079.RNA-Seq.chimeric.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 c8628002-fa71-4238-add5-ede0faf20799.rna_seq.chimeric.gdc_realn.bam 63287208 BAM chimeric harmonized CPTAC3 9734a833-c7af-4135-8326-0baec2820f27 ddd0001b9b0d34acd0a023794d8549be { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04079.RNA-Seq.chimeric.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 4e4a3c6c-3de1-4fe6-8bc0-6200966eac53.rna_seq.chimeric.gdc_realn.bam 34155161 BAM chimeric harmonized CPTAC3 0fb487ae-fd95-45c4-b64b-bb3bbe76304e a588f8a7ef2a0125fbd5b18835e2e254 { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04079.RNA-Seq.genomic.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 c8628002-fa71-4238-add5-ede0faf20799.rna_seq.genomic.gdc_realn.bam 8130247384 BAM genomic harmonized CPTAC3 eaf5af6f-5d20-4858-ab0d-5e5d0f9a35ce 62e501299a22fbd645a77b41ed3670a7 { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04079.RNA-Seq.genomic.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 4e4a3c6c-3de1-4fe6-8bc0-6200966eac53.rna_seq.genomic.gdc_realn.bam 7857414214 BAM genomic harmonized CPTAC3 c8b4c869-74f1-4bc3-bc52-d006ef3f7746 fbbfa49d7813bd377251961abf22f555 { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04079.RNA-Seq.R1_L003.T C3L-04079 LSCC RNA-Seq tumor CPT0304120009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L003_R1_001.fastq.gz 3690093354 FASTQ R1_L003 unaligned CPTAC3 2815a18f-e1ba-45de-a67e-2ac1988ec582 cead2c5c835ab34e38da6f24e600dc49 { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-04079.RNA-Seq.R1_L008.A C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTAGCGCT-GTGTAGAC_S32_L008_R1_001.fastq.gz 4129549202 FASTQ R1_L008 unaligned CPTAC3 6889624b-4f29-4f47-a3b2-2614c9f55cb9 a630d74eaea2c4f2ec566adc2cbf1ef8 { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-04079.RNA-Seq.R2_L003.T C3L-04079 LSCC RNA-Seq tumor CPT0304120009 200505_UNC32-K00270_0245_AHH5FVBBXY_AGTTCAGG-CCAACAGA_S9_L003_R2_001.fastq.gz 3997440822 FASTQ R2_L003 unaligned CPTAC3 10844c0d-45f2-4b34-a035-a4f108e93efc 656cd059003417fe8b652915cb6a6e2c { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-04079.RNA-Seq.R2_L008.A C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTAGCGCT-GTGTAGAC_S32_L008_R2_001.fastq.gz 4228325182 FASTQ R2_L008 unaligned CPTAC3 c4d4d9f5-28a6-43fc-a0dd-8a5012893224 6873503e3b668d4a98454c6e6c8c093c { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-04079.RNA-Seq.transcriptome.A.hg38 C3L-04079 LSCC RNA-Seq tissue_normal CPT0304140009 c8628002-fa71-4238-add5-ede0faf20799.rna_seq.transcriptome.gdc_realn.bam 10029873482 BAM transcriptome harmonized CPTAC3 d3876151-0a58-490f-abc2-e77de17cdfdc a4f9ee2ae5f79a203f05038da67e5b2a { 'aliquot_tag': 'ALQ_92058ada', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04079.RNA-Seq.transcriptome.T.hg38 C3L-04079 LSCC RNA-Seq tumor CPT0304120009 4e4a3c6c-3de1-4fe6-8bc0-6200966eac53.rna_seq.transcriptome.gdc_realn.bam 9928753388 BAM transcriptome harmonized CPTAC3 c86a8754-d004-46c6-9bbe-a643ca3f9d5c cc0834e2a75459eeb831c4b0c439a522 { 'aliquot_tag': 'ALQ_1d457f7a', 'gdc_sample_type': 'Primary Tumor' } C3L-04079.WGS.N C3L-04079 LSCC WGS blood_normal CPT0305040002 CPT0305040002.WholeGenome.RP-2158.bam 24347450858 BAM aligned CPTAC3 41fef29f-db09-4983-8548-722fe4ad9e45 b80372ff61768513d6df6e942f84049c { 'aliquot_tag': 'ALQ_68fc8b43', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04079.WGS.N.hg38 C3L-04079 LSCC WGS blood_normal CPT0305040002 9bea6b89-38ce-45c1-8fb2-9c0be6be4cd2_wgs_gdc_realn.bam 70378739186 BAM harmonized CPTAC3 6a3d4196-15a5-48bd-bf17-52f093143682 6847eea5773a3833525b654fceac1a69 { 'aliquot_tag': 'ALQ_68fc8b43', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04079.WGS.T C3L-04079 LSCC WGS tumor CPT0304120006 CPT0304120006.WholeGenome.RP-2158.bam 23699922433 BAM aligned CPTAC3 fef741d5-c6e6-467a-99cc-af68ae9bb561 85f444beb6878506c1f372203d3f5da5 { 'aliquot_tag': 'ALQ_8dfa62eb', 'gdc_sample_type': 'Primary Tumor' } @@ -14787,12 +15669,12 @@ C3L-04080.miRNA-Seq.T C3L-04080 PDA miRNA-Seq tumor CPT0221470011 190712_UNC32-K C3L-04080.miRNA-Seq.T.hg38 C3L-04080 PDA miRNA-Seq tumor CPT0221470011 9ae4c3a9-e9eb-419f-a055-6538f207f462_mirnaseq_gdc_realn.bam 214863179 BAM harmonized CPTAC3 635e172d-18d9-473e-959a-577d893346b6 b003cc195c404289c83289aab3f0b728 { 'aliquot_tag': 'ALQ_95cee453', 'gdc_sample_type': 'Primary Tumor' } C3L-04080.RNA-Seq.chimeric.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 ace2ab70-8db9-409f-a507-42d46ce9613b.rna_seq.chimeric.gdc_realn.bam 38392959 BAM chimeric harmonized CPTAC3 ba69042a-fcb6-4921-9137-f2455a62bb39 843b48005ba0d0df44be43e705c737a4 { 'aliquot_tag': 'ALQ_5df96aa4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04080.RNA-Seq.chimeric.T.hg38 C3L-04080 PDA RNA-Seq tumor CPT0221470011 2891c2cf-652a-4aad-a6ea-d288ec651e4f.rna_seq.chimeric.gdc_realn.bam 30603819 BAM chimeric harmonized CPTAC3 11a60ad1-3e66-42ff-bc59-aa30f5d6a3e8 3049f9240f414d8b747b3a6c9824fb4e { 'aliquot_tag': 'ALQ_95cee453', 'gdc_sample_type': 'Primary Tumor' } -C3L-04080.RNA-Seq.genomic.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 ace2ab70-8db9-409f-a507-42d46ce9613b.rna_seq.genomic.gdc_realn.bam 8703626542 BAM genomic harmonized CPTAC3 a0ed09b1-b3b0-493c-92e4-2849b8fdf369 794e99f424e5661f7515c524fff13e10 { 'aliquot_tag': 'ALQ_5df96aa4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04080.RNA-Seq.genomic.T.hg38 C3L-04080 PDA RNA-Seq tumor CPT0221470011 2891c2cf-652a-4aad-a6ea-d288ec651e4f.rna_seq.genomic.gdc_realn.bam 8856270179 BAM genomic harmonized CPTAC3 25c6ac67-9ffb-45f2-98b7-98cc9e8cd2f8 db7bfab5d9ca470e05c766992cd756c4 { 'aliquot_tag': 'ALQ_95cee453', 'gdc_sample_type': 'Primary Tumor' } -C3L-04080.RNA-Seq.R1_L003.T C3L-04080 PDA RNA-Seq tumor CPT0221470011 190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4051178418 FASTQ R1_L003 unaligned CPTAC3 87c9b79e-abdb-40ab-b747-52765ddf30d7 79f02f3c5757a0d80e251768612598af { 'aliquot_tag': 'ALQ_95cee453', 'gdc_sample_type': 'Primary Tumor' } -C3L-04080.RNA-Seq.R1_L004.A C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R1_001.fastq.gz 4096443371 FASTQ R1_L004 unaligned CPTAC3 0bafbbc4-a8fd-4a3b-b252-3adac644fe60 720f5a85c13f0ef0270aa9010c11ce0b { 'aliquot_tag': 'ALQ_5df96aa4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04080.RNA-Seq.R2_L003.T C3L-04080 PDA RNA-Seq tumor CPT0221470011 190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R2_001.fastq.gz 4511095235 FASTQ R2_L003 unaligned CPTAC3 ddeb1c1d-2624-46a6-8f66-d435d4c37f01 0402758b3fe05c423de4103eb3da6909 { 'aliquot_tag': 'ALQ_95cee453', 'gdc_sample_type': 'Primary Tumor' } -C3L-04080.RNA-Seq.R2_L004.A C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R2_001.fastq.gz 4600184115 FASTQ R2_L004 unaligned CPTAC3 8567f306-f3e7-441d-aca0-38432ccfeb16 28548d4fc41ff1aa9d281ff173feb308 { 'aliquot_tag': 'ALQ_5df96aa4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04080.RNA-Seq.genomic.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 ace2ab70-8db9-409f-a507-42d46ce9613b.rna_seq.genomic.gdc_realn.bam 8703626542 BAM genomic harmonized CPTAC3 88b1081e-3768-4e49-af2c-636230c7cb69 794e99f424e5661f7515c524fff13e10 { 'aliquot_tag': 'ALQ_5df96aa4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04080.RNA-Seq.genomic.T.hg38 C3L-04080 PDA RNA-Seq tumor CPT0221470011 2891c2cf-652a-4aad-a6ea-d288ec651e4f.rna_seq.genomic.gdc_realn.bam 8856270179 BAM genomic harmonized CPTAC3 f957a6b9-0f04-4b38-9f6c-7f98e77281c8 db7bfab5d9ca470e05c766992cd756c4 { 'aliquot_tag': 'ALQ_95cee453', 'gdc_sample_type': 'Primary Tumor' } +C3L-04080.RNA-Seq.R1_L003.T C3L-04080 PDA RNA-Seq tumor CPT0221470011 190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4051178418 FASTQ R1_L003 unaligned CPTAC3 87c9b79e-abdb-40ab-b747-52765ddf30d7 79f02f3c5757a0d80e251768612598af { 'aliquot_tag': 'ALQ_95cee453', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-04080.RNA-Seq.R1_L004.A C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R1_001.fastq.gz 4096443371 FASTQ R1_L004 unaligned CPTAC3 0bafbbc4-a8fd-4a3b-b252-3adac644fe60 720f5a85c13f0ef0270aa9010c11ce0b { 'aliquot_tag': 'ALQ_5df96aa4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-04080.RNA-Seq.R2_L003.T C3L-04080 PDA RNA-Seq tumor CPT0221470011 190702_UNC32-K00270_0188_BH7CLJBBXY_TCATCCTT-AGCGAGCT_S9_L003_R2_001.fastq.gz 4511095235 FASTQ R2_L003 unaligned CPTAC3 ddeb1c1d-2624-46a6-8f66-d435d4c37f01 0402758b3fe05c423de4103eb3da6909 { 'aliquot_tag': 'ALQ_95cee453', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-04080.RNA-Seq.R2_L004.A C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGCCTCAT-AGTAGAGA_S16_L004_R2_001.fastq.gz 4600184115 FASTQ R2_L004 unaligned CPTAC3 8567f306-f3e7-441d-aca0-38432ccfeb16 28548d4fc41ff1aa9d281ff173feb308 { 'aliquot_tag': 'ALQ_5df96aa4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-04080.RNA-Seq.transcriptome.A.hg38 C3L-04080 PDA RNA-Seq tissue_normal CPT0221490010 ace2ab70-8db9-409f-a507-42d46ce9613b.rna_seq.transcriptome.gdc_realn.bam 9510226870 BAM transcriptome harmonized CPTAC3 f79a02b1-c904-46d6-bd0b-e4cbb7fbd62d 24f61ee6764019bb116f31862495d928 { 'aliquot_tag': 'ALQ_5df96aa4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04080.RNA-Seq.transcriptome.T.hg38 C3L-04080 PDA RNA-Seq tumor CPT0221470011 2891c2cf-652a-4aad-a6ea-d288ec651e4f.rna_seq.transcriptome.gdc_realn.bam 11400731575 BAM transcriptome harmonized CPTAC3 cd95a27b-69e9-499c-a8d8-1f5d35e1cd56 5d5cda7ff2b481dde7c694a9fc359e27 { 'aliquot_tag': 'ALQ_95cee453', 'gdc_sample_type': 'Primary Tumor' } C3L-04080.Targeted.T C3L-04080 PDA Targeted Sequencing tumor CPT0221470008 CPT0221470008.CustomSelection.RP-1303.PDO-18786.bam 6029346310 BAM aligned CPTAC3 bb02c205-ca71-418f-881c-e4d396be8b6b ae6c8aa5201e57b0fd72d2e906b51e02 { 'aliquot_tag': 'ALQ_f5096db6', 'gdc_sample_type': 'Primary Tumor' } @@ -14811,21 +15693,29 @@ C3L-04081.MethArray.Green.T C3L-04081 GBM Methylation Array tumor CPT0265510008 C3L-04081.MethArray.Red.T C3L-04081 GBM Methylation Array tumor CPT0265510008 205555390176_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 44ba9c0b-f969-4a64-93ad-bd193b5365e0 6f981db1716d67b730ebb89f62751fa1 { 'aliquot_tag': 'ALQ_c110615a', 'gdc_sample_type': 'Primary Tumor' } C3L-04081.miRNA-Seq.T C3L-04081 GBM miRNA-Seq tumor CPT0265510011 210702_UNC32-K00270_0289_AHKJ22BBXY_TAATCG_S34_L005_R1_001.unaln.bam 326214186 BAM unaligned CPTAC3 ab3f233e-2bb2-484a-92b2-0852ad5a4bf2 e00a1125777ac8b88a5561714faf3bef { 'aliquot_tag': 'ALQ_a1d7e8bf', 'gdc_sample_type': 'Primary Tumor' } C3L-04081.miRNA-Seq.T C3L-04081 GBM miRNA-Seq tumor CPT0265510011 210817_UNC31-K00269_0302_AHLCTHBBXY_TAATCG_S33_L003_R1_001.unaln.bam 208478653 BAM unaligned CPTAC3 dce94583-521c-459d-b529-45c5971da228 67738811b28cfbe1b345975e70dc2773 { 'aliquot_tag': 'ALQ_a1d7e8bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-04081.RNA-Seq.R1_L005.T C3L-04081 GBM RNA-Seq tumor CPT0265510011 210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R1_001.fastq.gz 4282416778 FASTQ R1_L005 unaligned CPTAC3 ff00dd51-d902-4563-b623-786e9f78aaf5 b56929c00e32fc2b8213b95e39cf9ea6 { 'aliquot_tag': 'ALQ_a1d7e8bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-04081.RNA-Seq.R2_L005.T C3L-04081 GBM RNA-Seq tumor CPT0265510011 210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R2_001.fastq.gz 4509949652 FASTQ R2_L005 unaligned CPTAC3 bdef277c-4632-450b-8030-037e3dbe8b32 93f264f4c774516474e281836bb46804 { 'aliquot_tag': 'ALQ_a1d7e8bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-04081.miRNA-Seq.T.hg38 C3L-04081 GBM miRNA-Seq tumor CPT0265510011 ae7846ed-07bf-446d-a1ec-b3558f1b8edb_mirnaseq_gdc_realn.bam 599207791 BAM harmonized CPTAC3 775d25ac-60a2-4e9d-87b8-ff9a7b023eb3 b1149dfafffc975c671e3585db74acae { 'aliquot_tag': 'ALQ_a1d7e8bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-04081.RNA-Seq.chimeric.T.hg38 C3L-04081 GBM RNA-Seq tumor CPT0265510011 b84b3c0b-00dd-4f2a-872a-18547f885544.rna_seq.chimeric.gdc_realn.bam 207123557 BAM chimeric harmonized CPTAC3 fc9fffa1-0e7f-47f9-a0d3-e18f1b5c61fc 69248f743af7ee71882dab5ccde875ff { 'aliquot_tag': 'ALQ_a1d7e8bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-04081.RNA-Seq.genomic.T.hg38 C3L-04081 GBM RNA-Seq tumor CPT0265510011 b84b3c0b-00dd-4f2a-872a-18547f885544.rna_seq.genomic.gdc_realn.bam 9151750057 BAM genomic harmonized CPTAC3 fc058a02-e82d-4807-864d-b429c8fbf3d5 71cd3ccece273006ec04e89ad0d392ef { 'aliquot_tag': 'ALQ_a1d7e8bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-04081.RNA-Seq.R1_L005.T C3L-04081 GBM RNA-Seq tumor CPT0265510011 210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R1_001.fastq.gz 4282416778 FASTQ R1_L005 unaligned CPTAC3 ff00dd51-d902-4563-b623-786e9f78aaf5 b56929c00e32fc2b8213b95e39cf9ea6 { 'aliquot_tag': 'ALQ_a1d7e8bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04081.RNA-Seq.R2_L005.T C3L-04081 GBM RNA-Seq tumor CPT0265510011 210708_UNC32-K00270_0290_BHLLHHBBXY_GTGAATAT-TCTCATTC_S19_L005_R2_001.fastq.gz 4509949652 FASTQ R2_L005 unaligned CPTAC3 bdef277c-4632-450b-8030-037e3dbe8b32 93f264f4c774516474e281836bb46804 { 'aliquot_tag': 'ALQ_a1d7e8bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-04081.RNA-Seq.transcriptome.T.hg38 C3L-04081 GBM RNA-Seq tumor CPT0265510011 b84b3c0b-00dd-4f2a-872a-18547f885544.rna_seq.transcriptome.gdc_realn.bam 10489874222 BAM transcriptome harmonized CPTAC3 4b684e92-ed7f-48e8-803e-6a9ed1fcdeea 3f7bfd94f917b19f7fe57a9a7d2bc976 { 'aliquot_tag': 'ALQ_a1d7e8bf', 'gdc_sample_type': 'Primary Tumor' } C3L-04081.WGS.N C3L-04081 GBM WGS blood_normal CPT0264060002 CPT0264060002.WholeGenome.RP-2158.bam 22559972260 BAM aligned CPTAC3 2f67faeb-027b-43ce-b000-3866c6ebf473 2914847c230e8533c55181bfcf72f572 { 'aliquot_tag': 'ALQ_655fce53', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-04081.WGS.N.hg38 C3L-04081 GBM WGS blood_normal CPT0264060002 e6b94726-509a-4613-8525-6ea79747b2f9_wgs_gdc_realn.bam 65969932698 BAM harmonized CPTAC3 4ad311e9-01c5-464a-8d6c-40f40c331c19 d944222c06001c5ea0ac874b595d0fd8 { 'aliquot_tag': 'ALQ_655fce53', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04081.WGS.T C3L-04081 GBM WGS tumor CPT0265510008 CPT0265510008.WholeGenome.RP-2158.bam 25514113575 BAM aligned CPTAC3 e58c7501-6b0f-47d9-a0d9-fa72b6e25f39 c5eee9b9026866fe029bb2b94e51aeef { 'aliquot_tag': 'ALQ_c110615a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04081.WGS.T.hg38 C3L-04081 GBM WGS tumor CPT0265510008 fef12b13-bc4b-49fe-8975-9e7b25380154_wgs_gdc_realn.bam 73190033773 BAM harmonized CPTAC3 c8e3e5a9-2798-4125-a0f8-a84d2d5bb653 b2cb2fb5dfc7c5c380b7a34f0d6b8d1a { 'aliquot_tag': 'ALQ_c110615a', 'gdc_sample_type': 'Primary Tumor' } C3L-04081.WXS.N C3L-04081 GBM WXS blood_normal CPT0264060002 CPT0264060002.WholeExome.RP-1303.bam 23994779930 BAM aligned CPTAC3 df9455fb-b575-4002-9e2d-d7fb09fbebaa a92a657f8586eda0e3c8307992dc5c12 { 'aliquot_tag': 'ALQ_655fce53', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-04081.WXS.N.hg38 C3L-04081 GBM WXS blood_normal CPT0264060002 e6b94726-509a-4613-8525-6ea79747b2f9_wxs_gdc_realn.bam 33048251483 BAM harmonized CPTAC3 06d346ea-40cc-43fc-ab1e-a6e54c666c36 246051120849631656b676c93176b0b9 { 'aliquot_tag': 'ALQ_655fce53', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04081.WXS.T C3L-04081 GBM WXS tumor CPT0265510008 CPT0265510008.WholeExome.RP-1303.bam 27007068396 BAM aligned CPTAC3 2b3b6248-df80-4767-9b6a-3d11bd2cc5b4 c5137deb9a910ed35a6adf70726cd7de { 'aliquot_tag': 'ALQ_c110615a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04081.WXS.T.hg38 C3L-04081 GBM WXS tumor CPT0265510008 fef12b13-bc4b-49fe-8975-9e7b25380154_wxs_gdc_realn.bam 37176913565 BAM harmonized CPTAC3 4f239bb8-5070-4cf0-b14c-599bbb7bfd94 89fc869a424e1545bfe3cc2242445a6f { 'aliquot_tag': 'ALQ_c110615a', 'gdc_sample_type': 'Primary Tumor' } C3L-04082.MethArray.Green.T C3L-04082 GBM Methylation Array tumor CPT0265570007 204372030014_R01C01_Grn.idat 13677895 IDAT Green NA CPTAC3 c0349bd7-c6ee-4508-8cac-daf50e543949 0de21f3b99742909b3ca43265dca3efe { 'aliquot_tag': 'ALQ_deef896b', 'gdc_sample_type': 'Primary Tumor' } C3L-04082.MethArray.Red.T C3L-04082 GBM Methylation Array tumor CPT0265570007 204372030014_R01C01_Red.idat 13677895 IDAT Red NA CPTAC3 7ce1f779-23e3-4319-b2a5-1c7a1a73ecd7 a2c952542f194e3b0fd50292e0dd14b4 { 'aliquot_tag': 'ALQ_deef896b', 'gdc_sample_type': 'Primary Tumor' } C3L-04082.miRNA-Seq.T C3L-04082 GBM miRNA-Seq tumor CPT0265570010 200403_UNC31-K00269_0274_AHCF7GBBXY_TGACCA_S28_L002_R1_001.unaln.bam 233816272 BAM unaligned CPTAC3 4f037c4a-b4be-4662-ad7b-952b81324e1a 93ed3305db8a814daad8117ffc70074b { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor' } C3L-04082.miRNA-Seq.T.hg38 C3L-04082 GBM miRNA-Seq tumor CPT0265570010 015db4d7-81d1-47e6-b5ab-da7771bbbb55_mirnaseq_gdc_realn.bam 259069258 BAM harmonized CPTAC3 f3af9903-c085-4e9e-b733-10b15ef81da3 2f9a7e3cd5fec7f69db441e8e590a14e { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor' } -C3L-04082.RNA-Seq.chimeric.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 712c9a2f-519e-4be4-b702-d1d00e50e53b.rna_seq.chimeric.gdc_realn.bam 231822769 BAM chimeric harmonized CPTAC3 d17a8292-adb0-43c3-bf89-f74e79859e03 547651f431d430dddd86716547e47d15 { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor' } -C3L-04082.RNA-Seq.genomic.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 712c9a2f-519e-4be4-b702-d1d00e50e53b.rna_seq.genomic.gdc_realn.bam 9308398713 BAM genomic harmonized CPTAC3 38466396-31ce-421c-b8ff-9e626d14b953 926a4ffbd6ce0dd77c752d54036335b0 { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor' } -C3L-04082.RNA-Seq.R1_L007.T C3L-04082 GBM RNA-Seq tumor CPT0265570010 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R1_001.fastq.gz 4248024679 FASTQ R1_L007 unaligned CPTAC3 ec4c1755-cc9a-44e5-a27e-f2dfb20759aa 605ddfaf30860a2600b04703541a49ab { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor' } -C3L-04082.RNA-Seq.R2_L007.T C3L-04082 GBM RNA-Seq tumor CPT0265570010 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R2_001.fastq.gz 4598010602 FASTQ R2_L007 unaligned CPTAC3 5f246b0c-555f-40f6-8164-cb5299028ec0 e98b9ec3f4d86e85e2ade54f3dd4bb39 { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor' } -C3L-04082.RNA-Seq.transcriptome.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 712c9a2f-519e-4be4-b702-d1d00e50e53b.rna_seq.transcriptome.gdc_realn.bam 8671163202 BAM transcriptome harmonized CPTAC3 75d85f0e-f290-499a-b84c-2f6da94b0693 7f39e116121a3e293fdaabf839f82e96 { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor' } +C3L-04082.RNA-Seq.chimeric.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 a2b8d2a0-2051-482f-9b8d-bb1fcb4b1560.rna_seq.chimeric.gdc_realn.bam 231785209 BAM chimeric harmonized CPTAC3 6a97843b-826f-487d-adb1-ae0072c4373c f8d61f144e349ad9be792d884281152d { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor' } +C3L-04082.RNA-Seq.genomic.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 a2b8d2a0-2051-482f-9b8d-bb1fcb4b1560.rna_seq.genomic.gdc_realn.bam 9309720845 BAM genomic harmonized CPTAC3 9846a55f-d32b-46a6-81dd-5844f50738d7 3f306c7d57030d913fac129c720d3226 { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor' } +C3L-04082.RNA-Seq.R1_L007.T C3L-04082 GBM RNA-Seq tumor CPT0265570010 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R1_001.fastq.gz 4248024679 FASTQ R1_L007 unaligned CPTAC3 ec4c1755-cc9a-44e5-a27e-f2dfb20759aa 605ddfaf30860a2600b04703541a49ab { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-04082.RNA-Seq.R2_L007.T C3L-04082 GBM RNA-Seq tumor CPT0265570010 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGTCCAA-TATGAGTA_S8_L007_R2_001.fastq.gz 4598010602 FASTQ R2_L007 unaligned CPTAC3 5f246b0c-555f-40f6-8164-cb5299028ec0 e98b9ec3f4d86e85e2ade54f3dd4bb39 { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-04082.RNA-Seq.transcriptome.T.hg38 C3L-04082 GBM RNA-Seq tumor CPT0265570010 a2b8d2a0-2051-482f-9b8d-bb1fcb4b1560.rna_seq.transcriptome.gdc_realn.bam 9887475281 BAM transcriptome harmonized CPTAC3 10b131ca-20b2-47cb-aad1-5d1bdc2f1522 410bbb71fa55e8a206c0016ad73a9f5b { 'aliquot_tag': 'ALQ_59902d89', 'gdc_sample_type': 'Primary Tumor' } C3L-04082.WGS.N C3L-04082 GBM WGS blood_normal CPT0264080002 CPT0264080002.WholeGenome.RP-2158.bam 23128977215 BAM aligned CPTAC3 1f9d4fab-3a95-41ba-8cb8-70de60482272 2d7532abc3f9ac71521f5f2dad90b3bd { 'aliquot_tag': 'ALQ_da6f7032', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04082.WGS.N.hg38 C3L-04082 GBM WGS blood_normal CPT0264080002 bb8cccdb-ed81-4577-985c-bb7a2fa25615_wgs_gdc_realn.bam 67786654929 BAM harmonized CPTAC3 59832d48-68b8-4628-8d69-7508a94d58a8 79168dccb6f2af24bc16916028e034d9 { 'aliquot_tag': 'ALQ_da6f7032', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04082.WGS.T C3L-04082 GBM WGS tumor CPT0265570007 CPT0265570007.WholeGenome.RP-2158.bam 30408005969 BAM aligned CPTAC3 1a83e225-07c0-4a15-a08f-b287f7e00006 2b81437e81e5be3192e476f67c9c4333 { 'aliquot_tag': 'ALQ_deef896b', 'gdc_sample_type': 'Primary Tumor' } @@ -14838,11 +15728,11 @@ C3L-04083.MethArray.Green.T C3L-04083 GBM Methylation Array tumor CPT0242430007 C3L-04083.MethArray.Red.T C3L-04083 GBM Methylation Array tumor CPT0242430007 204372030024_R08C01_Red.idat 13677905 IDAT Red NA CPTAC3 990a1e0b-bb2d-41e6-b1c2-aa8c00460311 c8593d64049387a57f6528d91afe6827 { 'aliquot_tag': 'ALQ_67b1c5fd', 'gdc_sample_type': 'Primary Tumor' } C3L-04083.miRNA-Seq.T C3L-04083 GBM miRNA-Seq tumor CPT0242430010 200403_UNC31-K00269_0274_AHCF7GBBXY_AGTTCC_S38_L002_R1_001.unaln.bam 227407220 BAM unaligned CPTAC3 2a9500a6-03a6-4a52-bbc2-dcfe47abd5ea 4bf226a8a178ef2f1476cf8354420b1a { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor' } C3L-04083.miRNA-Seq.T.hg38 C3L-04083 GBM miRNA-Seq tumor CPT0242430010 da4f8b93-3997-4daa-8342-c2165079fd1d_mirnaseq_gdc_realn.bam 262845496 BAM harmonized CPTAC3 3160a1e1-b57a-4f65-b463-91727f0bc175 290423ff6be7e16227db692c7d2fdb46 { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04083.RNA-Seq.chimeric.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 1ea78b18-dc8e-4a37-b985-c34a4522b288.rna_seq.chimeric.gdc_realn.bam 402571759 BAM chimeric harmonized CPTAC3 5c2d7b92-4de3-4863-a210-a3f48d4a2fb5 cc38087bf813d4429513ce0deeb57346 { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04083.RNA-Seq.genomic.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 1ea78b18-dc8e-4a37-b985-c34a4522b288.rna_seq.genomic.gdc_realn.bam 8393959893 BAM genomic harmonized CPTAC3 2908a872-7867-4a32-b3eb-8df4a3ae90da a1bae891526f1116769c377980a7ab3e { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04083.RNA-Seq.R1_L002.T C3L-04083 GBM RNA-Seq tumor CPT0242430010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R1_001.fastq.gz 3611394680 FASTQ R1_L002 unaligned CPTAC3 5549791b-5875-433f-a85e-980a44bb3310 d2169d9407798432f166af4ed8904f9e { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04083.RNA-Seq.R2_L002.T C3L-04083 GBM RNA-Seq tumor CPT0242430010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R2_001.fastq.gz 4227666815 FASTQ R2_L002 unaligned CPTAC3 21ee205d-ff01-4791-82f7-e4b0f801a099 1d928d05498a22dacbb9eeeb2cdd13e1 { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04083.RNA-Seq.transcriptome.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 1ea78b18-dc8e-4a37-b985-c34a4522b288.rna_seq.transcriptome.gdc_realn.bam 7321812326 BAM transcriptome harmonized CPTAC3 0e095aa7-2f00-4877-b84f-c86d08824ba9 f653dd1f619923fb4d8189766fd2162a { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04083.RNA-Seq.chimeric.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 dba18b8e-3cc1-414e-b09c-37c2fdc1ce4b.rna_seq.chimeric.gdc_realn.bam 402539192 BAM chimeric harmonized CPTAC3 fe9c1a7c-0dba-42c5-8051-b9a8cfc62d6a 43907b210b22decd85f7bf125b11606c { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04083.RNA-Seq.genomic.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 dba18b8e-3cc1-414e-b09c-37c2fdc1ce4b.rna_seq.genomic.gdc_realn.bam 8394501462 BAM genomic harmonized CPTAC3 10d6a6ef-5cfa-4b8e-a892-3aae7014dbaf e1568dc6922a89720902141821c45f88 { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04083.RNA-Seq.R1_L002.T C3L-04083 GBM RNA-Seq tumor CPT0242430010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R1_001.fastq.gz 3611394680 FASTQ R1_L002 unaligned CPTAC3 5549791b-5875-433f-a85e-980a44bb3310 d2169d9407798432f166af4ed8904f9e { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-04083.RNA-Seq.R2_L002.T C3L-04083 GBM RNA-Seq tumor CPT0242430010 200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R2_001.fastq.gz 4227666815 FASTQ R2_L002 unaligned CPTAC3 21ee205d-ff01-4791-82f7-e4b0f801a099 1d928d05498a22dacbb9eeeb2cdd13e1 { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-04083.RNA-Seq.transcriptome.T.hg38 C3L-04083 GBM RNA-Seq tumor CPT0242430010 dba18b8e-3cc1-414e-b09c-37c2fdc1ce4b.rna_seq.transcriptome.gdc_realn.bam 8410271845 BAM transcriptome harmonized CPTAC3 00cc777f-b56e-4ac1-9309-d7a5c8f2019e d5ee9266fc85fbc2047d8228f589cac2 { 'aliquot_tag': 'ALQ_e0ce611f', 'gdc_sample_type': 'Primary Tumor' } C3L-04083.WGS.N C3L-04083 GBM WGS blood_normal CPT0243420002 CPT0243420002.WholeGenome.RP-2158.bam 25713668352 BAM aligned CPTAC3 a9c2a88b-947b-4b4e-94b1-6b877ae9b7c6 3429b00db2bbed7bdfaaa7e8f1d236a0 { 'aliquot_tag': 'ALQ_8ccc1376', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04083.WGS.N.hg38 C3L-04083 GBM WGS blood_normal CPT0243420002 d0ebe943-1e7a-4ad0-9273-5227f54f1cc6_wgs_gdc_realn.bam 76815969296 BAM harmonized CPTAC3 8f0a473f-e05f-4b30-988f-a4456e458e19 816c80c4fcb03e117f17ba7fb395110d { 'aliquot_tag': 'ALQ_8ccc1376', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04083.WGS.T C3L-04083 GBM WGS tumor CPT0242430007 CPT0242430007.WholeGenome.RP-2158.bam 24095585977 BAM aligned CPTAC3 058118a9-ec62-4f35-9758-e4701373868f c757a848bb3e2b6aa19a896e5ed11456 { 'aliquot_tag': 'ALQ_67b1c5fd', 'gdc_sample_type': 'Primary Tumor' } @@ -14856,9 +15746,9 @@ C3L-04084.MethArray.Red.T C3L-04084 GBM Methylation Array tumor CPT0217100006 20 C3L-04084.miRNA-Seq.T C3L-04084 GBM miRNA-Seq tumor CPT0217100013 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGAGC_S2_L003_R1_001.unaln.bam 203306244 BAM unaligned CPTAC3 cdf031a1-492b-44b0-a821-90f969c5c7df f00c4ab30e4c829c68ec340b255c1288 { 'aliquot_tag': 'ALQ_7472fa05', 'gdc_sample_type': 'Primary Tumor' } C3L-04084.miRNA-Seq.T.hg38 C3L-04084 GBM miRNA-Seq tumor CPT0217100013 7b3b86b2-a890-476c-990e-afb4e4770c4c_mirnaseq_gdc_realn.bam 225585539 BAM harmonized CPTAC3 6643eb79-4efe-4a2f-abae-80a5a2905cd4 3d99b39299d52e1384c8fda401e7cfde { 'aliquot_tag': 'ALQ_7472fa05', 'gdc_sample_type': 'Primary Tumor' } C3L-04084.RNA-Seq.chimeric.T.hg38 C3L-04084 GBM RNA-Seq tumor CPT0217100013 49c3c401-6884-4046-acd6-4691ab29069f.rna_seq.chimeric.gdc_realn.bam 121646974 BAM chimeric harmonized CPTAC3 7260a314-fd26-4e17-b40e-7a76ad57de65 9b2ac114eae200551428de36aa4c22e3 { 'aliquot_tag': 'ALQ_7472fa05', 'gdc_sample_type': 'Primary Tumor' } -C3L-04084.RNA-Seq.genomic.T.hg38 C3L-04084 GBM RNA-Seq tumor CPT0217100013 49c3c401-6884-4046-acd6-4691ab29069f.rna_seq.genomic.gdc_realn.bam 10675176544 BAM genomic harmonized CPTAC3 1e8a4238-8b2e-4d66-b0ed-286f32128d53 4a3eec71e5114318e2ee73ee4f80912f { 'aliquot_tag': 'ALQ_7472fa05', 'gdc_sample_type': 'Primary Tumor' } -C3L-04084.RNA-Seq.R1_L008.T C3L-04084 GBM RNA-Seq tumor CPT0217100013 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R1_001.fastq.gz 4935606676 FASTQ R1_L008 unaligned CPTAC3 b2c130ea-b93b-4fa3-9d65-ec453849df62 751ff660655b9ad79c5664a87c4a0e07 { 'aliquot_tag': 'ALQ_7472fa05', 'gdc_sample_type': 'Primary Tumor' } -C3L-04084.RNA-Seq.R2_L008.T C3L-04084 GBM RNA-Seq tumor CPT0217100013 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R2_001.fastq.gz 5394084037 FASTQ R2_L008 unaligned CPTAC3 5862426d-2acc-420a-92be-9a0bbfca35d4 b3a128b811cd565b2923670000755e41 { 'aliquot_tag': 'ALQ_7472fa05', 'gdc_sample_type': 'Primary Tumor' } +C3L-04084.RNA-Seq.genomic.T.hg38 C3L-04084 GBM RNA-Seq tumor CPT0217100013 49c3c401-6884-4046-acd6-4691ab29069f.rna_seq.genomic.gdc_realn.bam 10675176544 BAM genomic harmonized CPTAC3 d6bcec0f-dec3-4f56-ac0b-ff88b1febf44 4a3eec71e5114318e2ee73ee4f80912f { 'aliquot_tag': 'ALQ_7472fa05', 'gdc_sample_type': 'Primary Tumor' } +C3L-04084.RNA-Seq.R1_L008.T C3L-04084 GBM RNA-Seq tumor CPT0217100013 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R1_001.fastq.gz 4935606676 FASTQ R1_L008 unaligned CPTAC3 b2c130ea-b93b-4fa3-9d65-ec453849df62 751ff660655b9ad79c5664a87c4a0e07 { 'aliquot_tag': 'ALQ_7472fa05', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04084.RNA-Seq.R2_L008.T C3L-04084 GBM RNA-Seq tumor CPT0217100013 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L008_R2_001.fastq.gz 5394084037 FASTQ R2_L008 unaligned CPTAC3 5862426d-2acc-420a-92be-9a0bbfca35d4 b3a128b811cd565b2923670000755e41 { 'aliquot_tag': 'ALQ_7472fa05', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-04084.RNA-Seq.transcriptome.T.hg38 C3L-04084 GBM RNA-Seq tumor CPT0217100013 49c3c401-6884-4046-acd6-4691ab29069f.rna_seq.transcriptome.gdc_realn.bam 10461895759 BAM transcriptome harmonized CPTAC3 16e520e0-301b-42d5-b393-3269c1d9a7f6 72a6716a45eae4dc38fa7c4fe6535154 { 'aliquot_tag': 'ALQ_7472fa05', 'gdc_sample_type': 'Primary Tumor' } C3L-04084.WGS.N C3L-04084 GBM WGS blood_normal CPT0218020002 CPT0218020002.WholeGenome.RP-1303.bam 53676724410 BAM aligned CPTAC3 5682d807-fda5-4e8c-9a39-4ca8e38df754 5d37b4f1ef5e806bb294f9db4cb3992b { 'aliquot_tag': 'ALQ_5dba0bfe', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04084.WGS.N.hg38 C3L-04084 GBM WGS blood_normal CPT0218020002 2c910118-4ad0-4114-bd8e-a4454ad1e5d6_wgs_gdc_realn.bam 77845598765 BAM harmonized CPTAC3 5b481775-6b55-4ac6-811e-30d61f8628a9 2350d9b4d3c8f2f70a13e12b406e96e8 { 'aliquot_tag': 'ALQ_5dba0bfe', 'gdc_sample_type': 'Blood Derived Normal' } @@ -14872,11 +15762,11 @@ C3L-04085.MethArray.Green.T C3L-04085 GBM Methylation Array tumor CPT0242520007 C3L-04085.MethArray.Red.T C3L-04085 GBM Methylation Array tumor CPT0242520007 204930630114_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 fd7a104b-1630-45e7-a680-5b835d10aa52 529806c28516285125769712821d4480 { 'aliquot_tag': 'ALQ_918d3fe8', 'gdc_sample_type': 'Primary Tumor' } C3L-04085.miRNA-Seq.T C3L-04085 GBM miRNA-Seq tumor CPT0242520010 201209_UNC32-K00270_0265_AHJ55WBBXY_GGCTAC_S32_L007_R1_001.unaln.bam 287761601 BAM unaligned CPTAC3 bc6d5dfb-bb31-45ae-8b0e-2a08360a5cd7 cb6a11627511330be2551dabf94fb84e { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor' } C3L-04085.miRNA-Seq.T.hg38 C3L-04085 GBM miRNA-Seq tumor CPT0242520010 7c66c6f6-c15c-4849-890e-cfc7f177969b_mirnaseq_gdc_realn.bam 323431402 BAM harmonized CPTAC3 9ec75e7f-e177-4d27-96ab-894f82b7dc3f e0d5830e0ee057de9f88cec76d76e0ed { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04085.RNA-Seq.chimeric.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 0fd354cd-b047-4676-8631-085cb56b0253.rna_seq.chimeric.gdc_realn.bam 604876518 BAM chimeric harmonized CPTAC3 1d12d990-5903-40af-ac05-635577cdd34f 3ba9b6e29c6246ddc2dfc8bcbae7c20d { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04085.RNA-Seq.genomic.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 0fd354cd-b047-4676-8631-085cb56b0253.rna_seq.genomic.gdc_realn.bam 9274069937 BAM genomic harmonized CPTAC3 2e1e8d8d-b8a0-4b45-90f5-39bbffe76738 c85eee84e723e878b31c6729f5f99ef7 { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04085.RNA-Seq.R1_L001.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 4245996180 FASTQ R1_L001 unaligned CPTAC3 25f5bea4-fef4-4378-9ccb-8a5befebf88a f7da59772143538816e2c5dd6b9d4b60 { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04085.RNA-Seq.R2_L001.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4917989962 FASTQ R2_L001 unaligned CPTAC3 f0486b67-d5ff-4ae5-97ff-218d95b1e496 d94ec5a4807f86bac4a3cf58aea162d1 { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04085.RNA-Seq.transcriptome.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 0fd354cd-b047-4676-8631-085cb56b0253.rna_seq.transcriptome.gdc_realn.bam 8723177874 BAM transcriptome harmonized CPTAC3 b494c7e0-9bb1-4896-973e-ef7039969f2d 2b46c170b86479f8a78d7c7ec1f973a4 { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04085.RNA-Seq.chimeric.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.chimeric.gdc_realn.bam 604928154 BAM chimeric harmonized CPTAC3 fb34a7da-4c56-495e-86b0-96f88aae704c c5463a49eb963a9bb5373aae1c5ca873 { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04085.RNA-Seq.genomic.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.genomic.gdc_realn.bam 9281811898 BAM genomic harmonized CPTAC3 0374b38f-c17b-4b24-87cf-386ea14434da 9a4e6a7e347b635c4d66bcfd2a805436 { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04085.RNA-Seq.R1_L001.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 4245996180 FASTQ R1_L001 unaligned CPTAC3 25f5bea4-fef4-4378-9ccb-8a5befebf88a f7da59772143538816e2c5dd6b9d4b60 { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04085.RNA-Seq.R2_L001.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4917989962 FASTQ R2_L001 unaligned CPTAC3 f0486b67-d5ff-4ae5-97ff-218d95b1e496 d94ec5a4807f86bac4a3cf58aea162d1 { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04085.RNA-Seq.transcriptome.T.hg38 C3L-04085 GBM RNA-Seq tumor CPT0242520010 8762e826-22b0-4539-84c7-2a76aade09be.rna_seq.transcriptome.gdc_realn.bam 10042751410 BAM transcriptome harmonized CPTAC3 355f8bf9-8151-4d8d-b14d-8c15fec13215 2d945bd87aec981400240cda19f79609 { 'aliquot_tag': 'ALQ_16f29b0a', 'gdc_sample_type': 'Primary Tumor' } C3L-04085.WGS.N C3L-04085 GBM WGS blood_normal CPT0243440002 CPT0243440002.WholeGenome.RP-2158.bam 22966209999 BAM aligned CPTAC3 01ee3659-ba85-44ef-b3f6-0af789f0ac5f 92e7683a106258351e6cd8a9dd07ef23 { 'aliquot_tag': 'ALQ_38ce6d6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04085.WGS.N.hg38 C3L-04085 GBM WGS blood_normal CPT0243440002 a70f4fe0-29b6-40d6-877a-4754cb2270cf_wgs_gdc_realn.bam 68911988155 BAM harmonized CPTAC3 71b6faf7-a10b-4bc5-b997-e075c6806937 91f5bcc634a50fb8186a858baaf7e123 { 'aliquot_tag': 'ALQ_38ce6d6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04085.WGS.T C3L-04085 GBM WGS tumor CPT0242520007 CPT0242520007.WholeGenome.RP-2158.bam 22101856002 BAM aligned CPTAC3 fc6a67f7-5b0c-428b-875e-8a1443af63f5 799fdc32c48861a960360077ea6e8a22 { 'aliquot_tag': 'ALQ_918d3fe8', 'gdc_sample_type': 'Primary Tumor' } @@ -14889,11 +15779,11 @@ C3L-04090.MethArray.Green.T C3L-04090 GBM Methylation Array tumor CPT0265630007 C3L-04090.MethArray.Red.T C3L-04090 GBM Methylation Array tumor CPT0265630007 204367400087_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 0d4bc648-2c5f-4a71-82ce-ae5448ed8ad4 eaa9a674df9a09f9016a41d052f87224 { 'aliquot_tag': 'ALQ_adfb5d05', 'gdc_sample_type': 'Primary Tumor' } C3L-04090.miRNA-Seq.T C3L-04090 GBM miRNA-Seq tumor CPT0265630010 200403_UNC31-K00269_0274_AHCF7GBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 229790346 BAM unaligned CPTAC3 dd773231-83d5-4d0e-afd5-6827c0ab45cb db36cb210fbd2f57987234081afbf20a { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor' } C3L-04090.miRNA-Seq.T.hg38 C3L-04090 GBM miRNA-Seq tumor CPT0265630010 81f20c51-e19d-4cb4-a74d-59c4aff9a5c9_mirnaseq_gdc_realn.bam 259059313 BAM harmonized CPTAC3 4f77b53c-7b32-42b1-9ff3-eac29474ec55 3e27b38ed0164f9828a18096078178e1 { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04090.RNA-Seq.chimeric.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 ced18db1-7819-42ca-9bfc-e97c73e17a6e.rna_seq.chimeric.gdc_realn.bam 427349574 BAM chimeric harmonized CPTAC3 8463f852-b336-4d07-8467-b6891e8b99af 64b4464cd43598d144be3c9d2a407220 { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04090.RNA-Seq.genomic.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 ced18db1-7819-42ca-9bfc-e97c73e17a6e.rna_seq.genomic.gdc_realn.bam 10697459190 BAM genomic harmonized CPTAC3 e1133e04-81e3-410a-baf9-3d8755f37b5f 971e21bc55fbbe4e3c7fcc9761832777 { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04090.RNA-Seq.R1_L008.T C3L-04090 GBM RNA-Seq tumor CPT0265630010 200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R1_001.fastq.gz 4945213572 FASTQ R1_L008 unaligned CPTAC3 9a8aec46-4acd-4c73-96c3-ab521a638114 a679c5c2f2ae92dd0b120c3a216ee245 { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04090.RNA-Seq.R2_L008.T C3L-04090 GBM RNA-Seq tumor CPT0265630010 200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R2_001.fastq.gz 5597226556 FASTQ R2_L008 unaligned CPTAC3 c3e5d01b-6efa-4a68-9f27-d3d6955b01e5 6be22923c70e6dc8ca956f3c7cfef44f { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04090.RNA-Seq.transcriptome.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 ced18db1-7819-42ca-9bfc-e97c73e17a6e.rna_seq.transcriptome.gdc_realn.bam 9499303950 BAM transcriptome harmonized CPTAC3 b50accdc-4ded-467d-8350-382e598336bb 5d6cfe9ec79bd351c1b7dd4ba2dfd44e { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04090.RNA-Seq.chimeric.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 fcf1c18e-d1ee-4d30-96c6-ac8b656709ca.rna_seq.chimeric.gdc_realn.bam 427303355 BAM chimeric harmonized CPTAC3 dfe89388-1cd3-4df2-81ed-c9d9e8bfd5ff 0a1dd17a60be3f5c75e6705568b4d691 { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04090.RNA-Seq.genomic.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 fcf1c18e-d1ee-4d30-96c6-ac8b656709ca.rna_seq.genomic.gdc_realn.bam 10698751629 BAM genomic harmonized CPTAC3 f0b47847-a2a9-47f5-834a-dade63f2d241 19bff7907bd66704524860b06d973696 { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04090.RNA-Seq.R1_L008.T C3L-04090 GBM RNA-Seq tumor CPT0265630010 200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R1_001.fastq.gz 4945213572 FASTQ R1_L008 unaligned CPTAC3 9a8aec46-4acd-4c73-96c3-ab521a638114 a679c5c2f2ae92dd0b120c3a216ee245 { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04090.RNA-Seq.R2_L008.T C3L-04090 GBM RNA-Seq tumor CPT0265630010 200129_UNC31-K00269_0261_AHG2CLBBXY_ATCCACTG-AGGTGCGT_S9_L008_R2_001.fastq.gz 5597226556 FASTQ R2_L008 unaligned CPTAC3 c3e5d01b-6efa-4a68-9f27-d3d6955b01e5 6be22923c70e6dc8ca956f3c7cfef44f { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04090.RNA-Seq.transcriptome.T.hg38 C3L-04090 GBM RNA-Seq tumor CPT0265630010 fcf1c18e-d1ee-4d30-96c6-ac8b656709ca.rna_seq.transcriptome.gdc_realn.bam 10939001948 BAM transcriptome harmonized CPTAC3 015180a3-5a78-4913-ad11-0495ed1110e6 81227cc660238edc29d819ac47dd5239 { 'aliquot_tag': 'ALQ_2a84f9e7', 'gdc_sample_type': 'Primary Tumor' } C3L-04090.WGS.N C3L-04090 GBM WGS blood_normal CPT0264100002 CPT0264100002.WholeGenome.RP-2158.bam 28096864252 BAM aligned CPTAC3 38c663ab-d41b-4605-80f4-21334e899a9f 0ede58443a662208c3128f3d3fa44a25 { 'aliquot_tag': 'ALQ_2143e856', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04090.WGS.N.hg38 C3L-04090 GBM WGS blood_normal CPT0264100002 cd982953-0066-4729-91e5-ccf5800c6287_wgs_gdc_realn.bam 83572926292 BAM harmonized CPTAC3 b005d5ce-da55-4484-b85f-33250d2f2f93 9155a20fa7b7f69e4a5cb35558e35e29 { 'aliquot_tag': 'ALQ_2143e856', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04090.WGS.T C3L-04090 GBM WGS tumor CPT0265630007 CPT0265630007.WholeGenome.RP-2158.bam 31570550494 BAM aligned CPTAC3 281321cf-ff95-40ef-973a-1cdd931c914e b9d1b2442da75249ab30e8c1d21ade6e { 'aliquot_tag': 'ALQ_adfb5d05', 'gdc_sample_type': 'Primary Tumor' } @@ -14902,21 +15792,30 @@ C3L-04090.WXS.N C3L-04090 GBM WXS blood_normal CPT0264100002 CPT0264100002.Whole C3L-04090.WXS.N.hg38 C3L-04090 GBM WXS blood_normal CPT0264100002 cd982953-0066-4729-91e5-ccf5800c6287_wxs_gdc_realn.bam 34156625605 BAM harmonized CPTAC3 cb068c31-d894-43ba-b308-3b1f97d8c15e 7d93d13f61539407ea5f7bf969243955 { 'aliquot_tag': 'ALQ_2143e856', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04090.WXS.T C3L-04090 GBM WXS tumor CPT0265630007 CPT0265630007.WholeExome.RP-1303.bam 20161190594 BAM aligned CPTAC3 494ab4e9-c16b-4840-8abd-fd9e5e21cb99 56a9ee4207a1da6678ca47f27a7ba31d { 'aliquot_tag': 'ALQ_adfb5d05', 'gdc_sample_type': 'Primary Tumor' } C3L-04090.WXS.T.hg38 C3L-04090 GBM WXS tumor CPT0265630007 0dc0882f-2967-4268-afaa-eff7fa83e921_wxs_gdc_realn.bam 28215868388 BAM harmonized CPTAC3 6b65e8bd-213a-4815-b2cc-ff4733cccf2d 6360c393021ab327fef4c8e3cff745fa { 'aliquot_tag': 'ALQ_adfb5d05', 'gdc_sample_type': 'Primary Tumor' } -C3L-04197.RNA-Seq.R1_.T C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 20210729_P3_G12_WB7988-Plate3_S84_R1_001.fastq.gz 3321276793 FASTQ R1_ unaligned CPTAC3 1b6ff914-fe0c-458a-8759-26b379dc0fcb aac3ed22a7febcc0680aa5022d714369 { 'aliquot_tag': 'ALQ_edb17293', 'gdc_sample_type': 'Primary Tumor' } -C3L-04197.RNA-Seq.R2_.T C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 20210729_P3_G12_WB7988-Plate3_S84_R2_001.fastq.gz 3565568028 FASTQ R2_ unaligned CPTAC3 74b58e38-46bc-4fa0-a7ec-53e2db01d100 75c59f5dfc41c749fb7dfd9ff3813614 { 'aliquot_tag': 'ALQ_edb17293', 'gdc_sample_type': 'Primary Tumor' } -C3L-04198.RNA-Seq.R1_.T C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 20210723_P2_H3_WB7988-plate2_S87_R1_001.fastq.gz 4073180584 FASTQ R1_ unaligned CPTAC3 5ffb7de9-8677-4ab5-8409-27c6315efe3c a82c58eb2c813eafc6213c2d5ec77c5d { 'aliquot_tag': 'ALQ_99dd1f57', 'gdc_sample_type': 'Primary Tumor' } -C3L-04198.RNA-Seq.R2_.T C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 20210723_P2_H3_WB7988-plate2_S87_R2_001.fastq.gz 4170004731 FASTQ R2_ unaligned CPTAC3 d9fedabc-4000-44ca-a128-9c788b5c6184 c48a77aedda5269c495f0aa7d754f02e { 'aliquot_tag': 'ALQ_99dd1f57', 'gdc_sample_type': 'Primary Tumor' } -C3L-04199.RNA-Seq.R1_.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R1_001.fastq.gz 6773487889 FASTQ R1_ unaligned CPTAC3 412d9433-a40f-425b-a16b-ecd6ae4dccff ae54f8c762b3e3ea8b61bc4e83e57613 { 'aliquot_tag': 'ALQ_d7a9e289', 'gdc_sample_type': 'Primary Tumor' } -C3L-04199.RNA-Seq.R2_.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R2_001.fastq.gz 7054423596 FASTQ R2_ unaligned CPTAC3 77f0aee6-1661-4c2d-958f-16e073935dd2 8e89fade1183b3cbf362c7f71efb45a0 { 'aliquot_tag': 'ALQ_d7a9e289', 'gdc_sample_type': 'Primary Tumor' } +C3L-04197.RNA-Seq.chimeric.T.hg38 C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 15f3517a-347d-4970-8a4c-8b13c71c5ad7.rna_seq.chimeric.gdc_realn.bam 28742984 BAM chimeric harmonized CPTAC3 3de50244-c357-48dc-bc56-fef5441ae010 a126273bf229b5b6350f4005424ba4d4 { 'aliquot_tag': 'ALQ_edb17293', 'gdc_sample_type': 'Primary Tumor' } +C3L-04197.RNA-Seq.genomic.T.hg38 C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 15f3517a-347d-4970-8a4c-8b13c71c5ad7.rna_seq.genomic.gdc_realn.bam 5643450925 BAM genomic harmonized CPTAC3 c589f2ed-5125-479b-9d56-42477dffc3ff bd68a5bd579463a5f89595eac493eadb { 'aliquot_tag': 'ALQ_edb17293', 'gdc_sample_type': 'Primary Tumor' } +C3L-04197.RNA-Seq.T C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 20210729_P3_G12_WB7988-Plate3_S84_R1_001.fastq.gz 3321276793 FASTQ unaligned CPTAC3 1b6ff914-fe0c-458a-8759-26b379dc0fcb aac3ed22a7febcc0680aa5022d714369 +C3L-04197.RNA-Seq.T C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 20210729_P3_G12_WB7988-Plate3_S84_R2_001.fastq.gz 3565568028 FASTQ unaligned CPTAC3 74b58e38-46bc-4fa0-a7ec-53e2db01d100 75c59f5dfc41c749fb7dfd9ff3813614 +C3L-04197.RNA-Seq.transcriptome.T.hg38 C3L-04197 HNSCC RNA-Seq tumor CPT0325480001 15f3517a-347d-4970-8a4c-8b13c71c5ad7.rna_seq.transcriptome.gdc_realn.bam 5222426068 BAM transcriptome harmonized CPTAC3 a66f1468-f513-4d72-97a6-6202472c60fa 3501f78b38a68d572367bbddf7cd622f { 'aliquot_tag': 'ALQ_edb17293', 'gdc_sample_type': 'Primary Tumor' } +C3L-04198.RNA-Seq.chimeric.T.hg38 C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 6457a661-7db9-4f25-b45e-24378c144e55.rna_seq.chimeric.gdc_realn.bam 140328157 BAM chimeric harmonized CPTAC3 0cbcc20d-432f-4c7a-8667-de7225bc599f 717794acd9ba6e3778e9a4dd89a23c9e { 'aliquot_tag': 'ALQ_99dd1f57', 'gdc_sample_type': 'Primary Tumor' } +C3L-04198.RNA-Seq.genomic.T.hg38 C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 6457a661-7db9-4f25-b45e-24378c144e55.rna_seq.genomic.gdc_realn.bam 7698687774 BAM genomic harmonized CPTAC3 300646ca-4d72-499a-b866-ff0143e2dd26 5164d976b32b91892140acb1c4ceb91a { 'aliquot_tag': 'ALQ_99dd1f57', 'gdc_sample_type': 'Primary Tumor' } +C3L-04198.RNA-Seq.T C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 20210723_P2_H3_WB7988-plate2_S87_R1_001.fastq.gz 4073180584 FASTQ unaligned CPTAC3 5ffb7de9-8677-4ab5-8409-27c6315efe3c a82c58eb2c813eafc6213c2d5ec77c5d +C3L-04198.RNA-Seq.T C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 20210723_P2_H3_WB7988-plate2_S87_R2_001.fastq.gz 4170004731 FASTQ unaligned CPTAC3 d9fedabc-4000-44ca-a128-9c788b5c6184 c48a77aedda5269c495f0aa7d754f02e +C3L-04198.RNA-Seq.transcriptome.T.hg38 C3L-04198 HNSCC RNA-Seq tumor CPT0325560001 6457a661-7db9-4f25-b45e-24378c144e55.rna_seq.transcriptome.gdc_realn.bam 4317461849 BAM transcriptome harmonized CPTAC3 223578e2-b602-4d09-b180-b203ab88b509 2125e97b1c5652b4f9f58c675199098e { 'aliquot_tag': 'ALQ_99dd1f57', 'gdc_sample_type': 'Primary Tumor' } +C3L-04199.RNA-Seq.chimeric.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.chimeric.gdc_realn.bam 158388587 BAM chimeric harmonized CPTAC3 1e9dc16f-295c-45f2-80c0-f94b0ccd10b8 120b46cabd67f6b989e78bedc9a80e11 { 'aliquot_tag': 'ALQ_d7a9e289', 'gdc_sample_type': 'Primary Tumor' } +C3L-04199.RNA-Seq.genomic.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.genomic.gdc_realn.bam 10544135703 BAM genomic harmonized CPTAC3 121f2ed1-cb2e-4d0f-ab7c-d2a0944dc821 edf8ffc8db15c48166a4c6c86acfacfd { 'aliquot_tag': 'ALQ_d7a9e289', 'gdc_sample_type': 'Primary Tumor' } +C3L-04199.RNA-Seq.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R1_001.fastq.gz 6773487889 FASTQ unaligned CPTAC3 412d9433-a40f-425b-a16b-ecd6ae4dccff ae54f8c762b3e3ea8b61bc4e83e57613 +C3L-04199.RNA-Seq.T C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 20210714_P1_G6_WB7988_plate1_S77_R2_001.fastq.gz 7054423596 FASTQ unaligned CPTAC3 77f0aee6-1661-4c2d-958f-16e073935dd2 8e89fade1183b3cbf362c7f71efb45a0 +C3L-04199.RNA-Seq.transcriptome.T.hg38 C3L-04199 HNSCC RNA-Seq tumor CPT0325630001 a9fdeaec-ff98-4d60-b8d1-c14290034e8c.rna_seq.transcriptome.gdc_realn.bam 7505462055 BAM transcriptome harmonized CPTAC3 93a2efe1-cb3e-4a5b-8372-bc036683ae3b 16285eb411786115f01b2703c1b43572 { 'aliquot_tag': 'ALQ_d7a9e289', 'gdc_sample_type': 'Primary Tumor' } C3L-04213.MethArray.Green.T C3L-04213 GBM Methylation Array tumor CPT0277180006 204367490030_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 99a416e8-f01b-4505-9f64-75fdd5c86d5b 8d552955eeb20ee0366d8e04097d7738 { 'aliquot_tag': 'ALQ_eb1c7d8d', 'gdc_sample_type': 'Primary Tumor' } C3L-04213.MethArray.Red.T C3L-04213 GBM Methylation Array tumor CPT0277180006 204367490030_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 61764414-eaf2-4995-aab3-6177e0ce485e 94c47d82a307a15054c123e533217b76 { 'aliquot_tag': 'ALQ_eb1c7d8d', 'gdc_sample_type': 'Primary Tumor' } C3L-04213.miRNA-Seq.T C3L-04213 GBM miRNA-Seq tumor CPT0277180009 200403_UNC31-K00269_0274_AHCF7GBBXY_CACGAT_S7_L001_R1_001.unaln.bam 247132876 BAM unaligned CPTAC3 4a732346-4aee-42d0-80e9-32fe22a79b68 0110a279fa78eaf70cae0563b4113dcb { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor' } C3L-04213.miRNA-Seq.T.hg38 C3L-04213 GBM miRNA-Seq tumor CPT0277180009 5bdfbd50-8f9c-4421-afae-ad61bea3cbf7_mirnaseq_gdc_realn.bam 273383199 BAM harmonized CPTAC3 5a233130-f032-4f93-a4aa-a587f6b89b81 c0e3a4caaea580aba239e59007b8ccd4 { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04213.RNA-Seq.chimeric.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 21899df6-9f52-4e05-bd84-9c6665cd58fb.rna_seq.chimeric.gdc_realn.bam 31581958 BAM chimeric harmonized CPTAC3 a5983594-6259-4935-b9aa-c5e0c20d935d 111b88579cdaf31f4f99c17238617d84 { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04213.RNA-Seq.genomic.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 21899df6-9f52-4e05-bd84-9c6665cd58fb.rna_seq.genomic.gdc_realn.bam 7551598182 BAM genomic harmonized CPTAC3 50377fea-2c51-44b2-99ac-23703e4839f0 4df785ecc579c316dade7baa33ee5226 { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04213.RNA-Seq.R1_L006.T C3L-04213 GBM RNA-Seq tumor CPT0277180009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R1_001.fastq.gz 3097091394 FASTQ R1_L006 unaligned CPTAC3 3a18317d-3520-42dc-8003-f9561853b8dc 37e5acf5c7f949bc8b179a366242afb5 { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04213.RNA-Seq.R2_L006.T C3L-04213 GBM RNA-Seq tumor CPT0277180009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R2_001.fastq.gz 3633968119 FASTQ R2_L006 unaligned CPTAC3 fb64ce39-84ad-40df-801d-f1e1146356a0 d5486d52ba6fbf1c59bf8f520c3cdb03 { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04213.RNA-Seq.transcriptome.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 21899df6-9f52-4e05-bd84-9c6665cd58fb.rna_seq.transcriptome.gdc_realn.bam 5530877870 BAM transcriptome harmonized CPTAC3 d2733a26-2fbb-43c2-aa0c-09b4c2462fd9 ede9e382a95120ecb931bc0d8d8d573a { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04213.RNA-Seq.chimeric.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 996163f5-7bab-4850-be46-d11f15a33f81.rna_seq.chimeric.gdc_realn.bam 31570461 BAM chimeric harmonized CPTAC3 d9c7557b-9617-49ee-a8f7-f87425833221 af4c79f805edfb612415d625e807534c { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04213.RNA-Seq.genomic.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 996163f5-7bab-4850-be46-d11f15a33f81.rna_seq.genomic.gdc_realn.bam 7552304278 BAM genomic harmonized CPTAC3 53267dff-af2f-45ce-b5f2-61859fc06cf6 4edb02f9dea24bf12c065d4a8a68ccc3 { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04213.RNA-Seq.R1_L006.T C3L-04213 GBM RNA-Seq tumor CPT0277180009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R1_001.fastq.gz 3097091394 FASTQ R1_L006 unaligned CPTAC3 3a18317d-3520-42dc-8003-f9561853b8dc 37e5acf5c7f949bc8b179a366242afb5 { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-04213.RNA-Seq.R2_L006.T C3L-04213 GBM RNA-Seq tumor CPT0277180009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R2_001.fastq.gz 3633968119 FASTQ R2_L006 unaligned CPTAC3 fb64ce39-84ad-40df-801d-f1e1146356a0 d5486d52ba6fbf1c59bf8f520c3cdb03 { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-04213.RNA-Seq.transcriptome.T.hg38 C3L-04213 GBM RNA-Seq tumor CPT0277180009 996163f5-7bab-4850-be46-d11f15a33f81.rna_seq.transcriptome.gdc_realn.bam 6018935824 BAM transcriptome harmonized CPTAC3 b0f1b70e-46b3-4348-a4c4-e40864f47f40 12a26609e103ecb39cdd3cfde63a32db { 'aliquot_tag': 'ALQ_7ba3601c', 'gdc_sample_type': 'Primary Tumor' } C3L-04213.WGS.N C3L-04213 GBM WGS blood_normal CPT0277280002 CPT0277280002.WholeGenome.RP-2158.bam 27307720953 BAM aligned CPTAC3 9016f6fc-f3f7-4ef3-b81e-f8d54cc931f2 abdded50a59683701393aed02d94942f { 'aliquot_tag': 'ALQ_6ae5cb3a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04213.WGS.N.hg38 C3L-04213 GBM WGS blood_normal CPT0277280002 1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wgs_gdc_realn.bam 79615801627 BAM harmonized CPTAC3 e4a20d36-782a-4b14-a985-15b48497ff4e a3a5a591fff5a13d17e157b00ca7b40d { 'aliquot_tag': 'ALQ_6ae5cb3a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04213.WGS.T C3L-04213 GBM WGS tumor CPT0277180006 CPT0277180006.WholeGenome.RP-2158.bam 21897875310 BAM aligned CPTAC3 fa0facad-8fbc-4a5d-96c2-8411703567db 9379b0efdd9bc7ee849ca36c91202ce2 { 'aliquot_tag': 'ALQ_eb1c7d8d', 'gdc_sample_type': 'Primary Tumor' } @@ -14931,11 +15830,11 @@ C3L-04216.MethArray.Red.A C3L-04216 LSCC Methylation Array tissue_normal CPT0304 C3L-04216.MethArray.Red.T C3L-04216 LSCC Methylation Array tumor CPT0304620007 204367490056_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 ef8e860e-f2a7-489b-a32f-b55a4951308a 1ee824d5d62e745509b60c78422d47d9 { 'aliquot_tag': 'ALQ_e7f862c5', 'gdc_sample_type': 'Primary Tumor' } C3L-04216.miRNA-Seq.T C3L-04216 LSCC miRNA-Seq tumor CPT0304620010 200325_UNC31-K00269_0272_AHHC2NBBXY_TCCCGA_S22_L001_R1_001.unaln.bam 199514132 BAM unaligned CPTAC3 c3a12fb8-1db3-4e56-824b-e494e3b98776 a86a7be5b5f6d33b1f3475f421442197 { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor' } C3L-04216.miRNA-Seq.T.hg38 C3L-04216 LSCC miRNA-Seq tumor CPT0304620010 7f05998c-a7cb-4435-817d-0d409b45d832_mirnaseq_gdc_realn.bam 218566365 BAM harmonized CPTAC3 64b100f8-dc15-4835-8027-d896ed7b53b5 f7e00c2c9d2234f473dd2efbe5f2e69a { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor' } -C3L-04216.RNA-Seq.chimeric.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 48110baa-8e14-4bae-90a0-6134a448fe19.rna_seq.chimeric.gdc_realn.bam 42568354 BAM chimeric harmonized CPTAC3 492d6614-cb3a-4648-91e8-3c36967db0d2 4369368e74946b4a5085f7de9445e6c1 { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor' } -C3L-04216.RNA-Seq.genomic.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 48110baa-8e14-4bae-90a0-6134a448fe19.rna_seq.genomic.gdc_realn.bam 7072645564 BAM genomic harmonized CPTAC3 18bcffbe-9259-4349-ae0c-c43a5f236e22 60e21dc5a5b8c76fcdaaefd69f2a0c1f { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor' } -C3L-04216.RNA-Seq.R1_L008.T C3L-04216 LSCC RNA-Seq tumor CPT0304620010 200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R1_001.fastq.gz 3391145613 FASTQ R1_L008 unaligned CPTAC3 2b801f00-6d57-4304-b6f0-b622e817a416 4722af6fab925e3871defd1690a1cc7f { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor' } -C3L-04216.RNA-Seq.R2_L008.T C3L-04216 LSCC RNA-Seq tumor CPT0304620010 200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R2_001.fastq.gz 3498782473 FASTQ R2_L008 unaligned CPTAC3 56e142e2-4864-49a1-ad2e-475bf798ac98 11c83dbda791b3b768536a76a1c89014 { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor' } -C3L-04216.RNA-Seq.transcriptome.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 48110baa-8e14-4bae-90a0-6134a448fe19.rna_seq.transcriptome.gdc_realn.bam 8224052186 BAM transcriptome harmonized CPTAC3 22749b33-5b7c-455b-a652-c38a536ab452 b65d281d2c8b0d22ace5e7c28766d1fc { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor' } +C3L-04216.RNA-Seq.chimeric.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 1ff32514-fc0d-4f9c-be67-43966d58f78f.rna_seq.chimeric.gdc_realn.bam 42568137 BAM chimeric harmonized CPTAC3 d7c629ef-90a1-46b5-9f1a-dab384b745a2 360c11f48624d09b81eccbba2bd25085 { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor' } +C3L-04216.RNA-Seq.genomic.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 1ff32514-fc0d-4f9c-be67-43966d58f78f.rna_seq.genomic.gdc_realn.bam 7076559349 BAM genomic harmonized CPTAC3 b2ae43d7-46f3-4c41-a7ac-5a59daa3fedc e4432759c495db3815922de2446f9718 { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor' } +C3L-04216.RNA-Seq.R1_L008.T C3L-04216 LSCC RNA-Seq tumor CPT0304620010 200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R1_001.fastq.gz 3391145613 FASTQ R1_L008 unaligned CPTAC3 2b801f00-6d57-4304-b6f0-b622e817a416 4722af6fab925e3871defd1690a1cc7f { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04216.RNA-Seq.R2_L008.T C3L-04216 LSCC RNA-Seq tumor CPT0304620010 200428_UNC31-K00269_0275_AHGCJVBBXY_CGTCTGCG-TTCACAAT_S30_L008_R2_001.fastq.gz 3498782473 FASTQ R2_L008 unaligned CPTAC3 56e142e2-4864-49a1-ad2e-475bf798ac98 11c83dbda791b3b768536a76a1c89014 { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04216.RNA-Seq.transcriptome.T.hg38 C3L-04216 LSCC RNA-Seq tumor CPT0304620010 1ff32514-fc0d-4f9c-be67-43966d58f78f.rna_seq.transcriptome.gdc_realn.bam 9038111446 BAM transcriptome harmonized CPTAC3 553262b4-3f14-4511-a044-17a1d2b2b9f0 74fc7dd0f616e71455113e38344e0ae4 { 'aliquot_tag': 'ALQ_6087c627', 'gdc_sample_type': 'Primary Tumor' } C3L-04216.WGS.N C3L-04216 LSCC WGS blood_normal CPT0304770002 CPT0304770002.WholeGenome.RP-2158.bam 29678900313 BAM aligned CPTAC3 30fdf796-1a1c-4616-84ec-fec8fffc2208 d5179392a7b000ee70ad01898e0094a8 { 'aliquot_tag': 'ALQ_942eca9f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04216.WGS.N.hg38 C3L-04216 LSCC WGS blood_normal CPT0304770002 a2382a43-bed8-4b19-89cd-a00478fe45be_wgs_gdc_realn.bam 88687570987 BAM harmonized CPTAC3 b20b030c-97f3-4a04-bac4-a3139d0bf489 e3a4b54cb385fc06742ab52da5352a71 { 'aliquot_tag': 'ALQ_942eca9f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04216.WGS.T C3L-04216 LSCC WGS tumor CPT0304620007 CPT0304620007.WholeGenome.RP-2158.bam 25798342330 BAM aligned CPTAC3 5babcc1c-b13a-4ac1-9002-97453f096e63 577f7c40bed9e73ecb4e9f1479c09210 { 'aliquot_tag': 'ALQ_e7f862c5', 'gdc_sample_type': 'Primary Tumor' } @@ -14949,30 +15848,46 @@ C3L-04216.WXS.T.hg38 C3L-04216 LSCC WXS tumor CPT0304620007 44f13f39-00b5-4c5b-9 C3L-04231.MethArray.Green.Tbm C3L-04231 AML Methylation Array tumor_bone_marrow CPT0275480002 205555390164_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 39b9014d-6cd9-4b3c-a999-da8abea4e182 9a1755dabfffeae5a968799937123c86 { 'aliquot_tag': 'ALQ_2b23390e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04231.MethArray.Red.Tbm C3L-04231 AML Methylation Array tumor_bone_marrow CPT0275480002 205555390164_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 17ed8321-2e2b-4c73-a191-86dbf630731f fe605439d2f8711bf748eeb59773cdac { 'aliquot_tag': 'ALQ_2b23390e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04231.miRNA-Seq.Tbm C3L-04231 AML miRNA-Seq tumor_bone_marrow CPT0275490002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAACTA_S28_L002_R1_001.unaln.bam 362742737 BAM unaligned CPTAC3 ebfc821e-fffb-4d1b-9ffb-98f71a857c3d 1feef8404ecf8b36f18bf3ce0c737137 { 'aliquot_tag': 'ALQ_164310be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04231.RNA-Seq.R1_L008.Tbm C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 210318_UNC32-K00270_0277_AHKNTVBBXY_GCGCTCTA-GCTCCGAC_S63_L008_R1_001.fastq.gz 3267834385 FASTQ R1_L008 unaligned CPTAC3 0ce5469b-6555-41ad-b583-abacf090c5ff f0ece8831346e01a468bc7efdd792611 { 'aliquot_tag': 'ALQ_164310be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04231.RNA-Seq.R2_L008.Tbm C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 210318_UNC32-K00270_0277_AHKNTVBBXY_GCGCTCTA-GCTCCGAC_S63_L008_R2_001.fastq.gz 3783588039 FASTQ R2_L008 unaligned CPTAC3 14695f91-0a51-4d0d-883e-5c1fe933df93 7a970ac1de55d0fdf6538a45acec2099 { 'aliquot_tag': 'ALQ_164310be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04231.miRNA-Seq.Tbm.hg38 C3L-04231 AML miRNA-Seq tumor_bone_marrow CPT0275490002 ebbadb06-3614-4cdc-beac-b879e262503d_mirnaseq_gdc_realn.bam 386944131 BAM harmonized CPTAC3 b47ac028-a076-4914-b989-34205b47e69e 71d28a1c1e81715f3839a0a5991daa02 { 'aliquot_tag': 'ALQ_164310be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04231.RNA-Seq.chimeric.Tbm.hg38 C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 5c652a3f-c97d-41c8-83fb-4b2fa32f15be.rna_seq.chimeric.gdc_realn.bam 38854268 BAM chimeric harmonized CPTAC3 c1d61c89-3d8b-4d7d-90ce-d26498c06060 d72f19a8f75bffb52cfdb23142a5a07a { 'aliquot_tag': 'ALQ_164310be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04231.RNA-Seq.genomic.Tbm.hg38 C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 5c652a3f-c97d-41c8-83fb-4b2fa32f15be.rna_seq.genomic.gdc_realn.bam 8267197181 BAM genomic harmonized CPTAC3 8bcc6f9d-4535-4009-81bb-f86deadd16ee 2e4a72bee8caa3a073ce12c2e01fd5da { 'aliquot_tag': 'ALQ_164310be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04231.RNA-Seq.R1_L008.Tbm C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 210318_UNC32-K00270_0277_AHKNTVBBXY_GCGCTCTA-GCTCCGAC_S63_L008_R1_001.fastq.gz 3267834385 FASTQ R1_L008 unaligned CPTAC3 0ce5469b-6555-41ad-b583-abacf090c5ff f0ece8831346e01a468bc7efdd792611 { 'aliquot_tag': 'ALQ_164310be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-04231.RNA-Seq.R2_L008.Tbm C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 210318_UNC32-K00270_0277_AHKNTVBBXY_GCGCTCTA-GCTCCGAC_S63_L008_R2_001.fastq.gz 3783588039 FASTQ R2_L008 unaligned CPTAC3 14695f91-0a51-4d0d-883e-5c1fe933df93 7a970ac1de55d0fdf6538a45acec2099 { 'aliquot_tag': 'ALQ_164310be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-04231.RNA-Seq.transcriptome.Tbm.hg38 C3L-04231 AML RNA-Seq tumor_bone_marrow CPT0275490002 5c652a3f-c97d-41c8-83fb-4b2fa32f15be.rna_seq.transcriptome.gdc_realn.bam 7683392796 BAM transcriptome harmonized CPTAC3 1c17f6f6-acf4-484a-a466-340cc0305d43 eac31a422b3107a6530b3a7c5ac2a1db { 'aliquot_tag': 'ALQ_164310be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04231.WGS.Nbc C3L-04231 AML WGS buccal_normal CPT0275550001 CPT0275550001.WholeGenome.RP-2158.bam 55073835986 BAM aligned CPTAC3 9b1efd93-9766-48e1-afd2-4b8371bd5881 0b329a463eff2f44195f18dcb3ee6dbd { 'aliquot_tag': 'ALQ_81e67fa0', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04231.WGS.Nbc.hg38 C3L-04231 AML WGS buccal_normal CPT0275550001 3f65c678-a826-4ffa-b11a-480424b74dec_wgs_gdc_realn.bam 163200210374 BAM harmonized CPTAC3 529ad08a-dedd-4191-abe7-f747e9306138 91bbc9bd17e00f6a346ffa780cb8d79f { 'aliquot_tag': 'ALQ_81e67fa0', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04231.WGS.Tbm C3L-04231 AML WGS tumor_bone_marrow CPT0275480002 CPT0275480002.WholeGenome.RP-2158.bam 47398493399 BAM aligned CPTAC3 33099947-c5fc-4a12-91f4-978b9a511006 6c62161e272a6cbc5dd0cf87ef9ec007 { 'aliquot_tag': 'ALQ_2b23390e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04231.WGS.Tbm.hg38 C3L-04231 AML WGS tumor_bone_marrow CPT0275480002 83b06238-a197-43b3-b710-4b287a9ad2c8_wgs_gdc_realn.bam 141972851013 BAM harmonized CPTAC3 ac507b3c-a9f1-416e-9aac-3ba8d7f58d1c a900764d1c335d737fdc7ba018b4410b { 'aliquot_tag': 'ALQ_2b23390e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04231.WXS.Nbc C3L-04231 AML WXS buccal_normal CPT0275550001 CPT0275550001.WholeExome.RP-1303.bam 23015871457 BAM aligned CPTAC3 d235cade-b243-4d69-a57c-c28a7c071322 20ea20f647fb1daef9f06b6a1b189e9d { 'aliquot_tag': 'ALQ_81e67fa0', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04231.WXS.Nbc.hg38 C3L-04231 AML WXS buccal_normal CPT0275550001 3f65c678-a826-4ffa-b11a-480424b74dec_wxs_gdc_realn.bam 31967721084 BAM harmonized CPTAC3 16ae477a-e93e-467b-bcdc-4b3667ea8056 edd1bdf4f3642c492280740cf34dc8c4 { 'aliquot_tag': 'ALQ_81e67fa0', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04231.WXS.Tbm C3L-04231 AML WXS tumor_bone_marrow CPT0275480002 CPT0275480002.WholeExome.RP-1303.bam 21583087692 BAM aligned CPTAC3 ded479ec-b8ff-42b8-948b-e32e36108f49 679c9f3d5fadeccfcf8dc73808f94e47 { 'aliquot_tag': 'ALQ_2b23390e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04231.WXS.Tbm.hg38 C3L-04231 AML WXS tumor_bone_marrow CPT0275480002 83b06238-a197-43b3-b710-4b287a9ad2c8_wxs_gdc_realn.bam 30045221236 BAM harmonized CPTAC3 b3326b22-689d-4b80-baba-b22e6e41b57e 42cce95afe377f1a490e4b0a2625f7b0 { 'aliquot_tag': 'ALQ_2b23390e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04236.MethArray.Green.Tbm C3L-04236 AML Methylation Array tumor_bone_marrow CPT0275630002 205555390128_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fa65b946-00be-464e-acc0-b3e20eed6bd5 1690625867b31b6a3fedc0f8a4c989ff { 'aliquot_tag': 'ALQ_113ba914', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04236.MethArray.Red.Tbm C3L-04236 AML Methylation Array tumor_bone_marrow CPT0275630002 205555390128_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 4c03850c-8c98-4e30-92b7-b449f8639af7 08c2f712dc1fe9925960eae045874a1f { 'aliquot_tag': 'ALQ_113ba914', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04236.miRNA-Seq.Tbm C3L-04236 AML miRNA-Seq tumor_bone_marrow CPT0275640002 210702_UNC32-K00270_0289_AHKJ22BBXY_TTAGGC_S21_L001_R1_001.unaln.bam 240935302 BAM unaligned CPTAC3 be935ea4-6a52-453b-9976-0c3c7a500396 463250a055184bd6dd6d93a3dcb38dc8 { 'aliquot_tag': 'ALQ_a31b7504', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04236.RNA-Seq.R1_L008.Tbm C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 210318_UNC32-K00270_0277_AHKNTVBBXY_AACAGGTT-ATACCAAG_S61_L008_R1_001.fastq.gz 4506933232 FASTQ R1_L008 unaligned CPTAC3 53b6301b-9fe3-4e09-aa52-ad01479e1d61 9314b796b8f2c5e353a93c290b01ac65 { 'aliquot_tag': 'ALQ_a31b7504', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04236.RNA-Seq.R2_L008.Tbm C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 210318_UNC32-K00270_0277_AHKNTVBBXY_AACAGGTT-ATACCAAG_S61_L008_R2_001.fastq.gz 5151304611 FASTQ R2_L008 unaligned CPTAC3 d085633a-e3b6-4387-a6ea-6da417fb8c1e 85b09adbbea6c0910c07dadd6e7e12eb { 'aliquot_tag': 'ALQ_a31b7504', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04236.miRNA-Seq.Tbm.hg38 C3L-04236 AML miRNA-Seq tumor_bone_marrow CPT0275640002 5b563aa1-ba83-42d2-804e-37c96f35f282_mirnaseq_gdc_realn.bam 267716450 BAM harmonized CPTAC3 39ef4062-7a21-4ddb-80a6-1aa541968c23 73ffd6a026cce3569ab11863620450da { 'aliquot_tag': 'ALQ_a31b7504', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04236.RNA-Seq.chimeric.Tbm.hg38 C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 f50c0ed9-0c87-4d73-bb1e-d5292670c85c.rna_seq.chimeric.gdc_realn.bam 64437419 BAM chimeric harmonized CPTAC3 62a9ac70-cb62-4e39-b624-5f52e6d1f4a6 235307044f99213a0cf893e3d5201ea6 { 'aliquot_tag': 'ALQ_a31b7504', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04236.RNA-Seq.genomic.Tbm.hg38 C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 f50c0ed9-0c87-4d73-bb1e-d5292670c85c.rna_seq.genomic.gdc_realn.bam 9715154896 BAM genomic harmonized CPTAC3 148940bd-eaec-4e67-b622-ea81f2f0a269 f8464885381d1e4e2f405c771f76ad78 { 'aliquot_tag': 'ALQ_a31b7504', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04236.RNA-Seq.R1_L008.Tbm C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 210318_UNC32-K00270_0277_AHKNTVBBXY_AACAGGTT-ATACCAAG_S61_L008_R1_001.fastq.gz 4506933232 FASTQ R1_L008 unaligned CPTAC3 53b6301b-9fe3-4e09-aa52-ad01479e1d61 9314b796b8f2c5e353a93c290b01ac65 { 'aliquot_tag': 'ALQ_a31b7504', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-04236.RNA-Seq.R2_L008.Tbm C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 210318_UNC32-K00270_0277_AHKNTVBBXY_AACAGGTT-ATACCAAG_S61_L008_R2_001.fastq.gz 5151304611 FASTQ R2_L008 unaligned CPTAC3 d085633a-e3b6-4387-a6ea-6da417fb8c1e 85b09adbbea6c0910c07dadd6e7e12eb { 'aliquot_tag': 'ALQ_a31b7504', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-04236.RNA-Seq.transcriptome.Tbm.hg38 C3L-04236 AML RNA-Seq tumor_bone_marrow CPT0275640002 f50c0ed9-0c87-4d73-bb1e-d5292670c85c.rna_seq.transcriptome.gdc_realn.bam 8836282604 BAM transcriptome harmonized CPTAC3 1af308f0-6297-45de-a808-fff5e89c6a16 3a8d599b56ecabbc3f363b2e2e57f24c { 'aliquot_tag': 'ALQ_a31b7504', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04236.WGS.Nbc C3L-04236 AML WGS buccal_normal CPT0275680002 CPT0275680002.WholeGenome.RP-2158.bam 63433547664 BAM aligned CPTAC3 a31026af-7909-41b5-94f4-dbecfa51029c e1dd91cbbfa3204114a231f69dbb90f7 { 'aliquot_tag': 'ALQ_66eb9805', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04236.WGS.Nbc.hg38 C3L-04236 AML WGS buccal_normal CPT0275680002 2a94f3f0-5ef4-4443-9af7-d26820695de7_wgs_gdc_realn.bam 181836818026 BAM harmonized CPTAC3 fd22f225-d998-47b7-894b-79a9d7ac4109 dad459dee104e1374520d1c5329c759c { 'aliquot_tag': 'ALQ_66eb9805', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04236.WGS.Tbm C3L-04236 AML WGS tumor_bone_marrow CPT0275630002 CPT0275630002.WholeGenome.RP-2158.bam 54552524185 BAM aligned CPTAC3 7c5ad9de-75b0-4582-a763-23415a198b90 05f1bcaebfbfcf592cd5ee733d9723a0 { 'aliquot_tag': 'ALQ_113ba914', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04236.WGS.Tbm.hg38 C3L-04236 AML WGS tumor_bone_marrow CPT0275630002 20c5a330-281b-4b20-9f44-f52e66634199_wgs_gdc_realn.bam 164129559131 BAM harmonized CPTAC3 88ec4690-af60-4ef8-970e-324e05ed6101 07b209b35744ef8fa018c410f65392c0 { 'aliquot_tag': 'ALQ_113ba914', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04236.WXS.Nbc C3L-04236 AML WXS buccal_normal CPT0275680002 CPT0275680002.WholeExome.RP-1303.bam 24233447816 BAM aligned CPTAC3 c1b93911-88aa-46a3-af54-d8b9180e1a15 534c75805b0d5a7d0f06b03a0fcd7605 { 'aliquot_tag': 'ALQ_66eb9805', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04236.WXS.Nbc.hg38 C3L-04236 AML WXS buccal_normal CPT0275680002 2a94f3f0-5ef4-4443-9af7-d26820695de7_wxs_gdc_realn.bam 34079235614 BAM harmonized CPTAC3 da0e8d5a-812d-47f6-88c6-4dbf8db367a3 4f98d9a3dc5bacca925f7ac1edd6d6f9 { 'aliquot_tag': 'ALQ_66eb9805', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04236.WXS.Tbm C3L-04236 AML WXS tumor_bone_marrow CPT0275630002 CPT0275630002.WholeExome.RP-1303.bam 21851624507 BAM aligned CPTAC3 7dc4df2a-fd64-45b9-bff2-770d08248e71 dcfb5f4fe5910aed3512024b91f3ee3b { 'aliquot_tag': 'ALQ_113ba914', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04236.WXS.Tbm.hg38 C3L-04236 AML WXS tumor_bone_marrow CPT0275630002 20c5a330-281b-4b20-9f44-f52e66634199_wxs_gdc_realn.bam 30235908890 BAM harmonized CPTAC3 3158eeeb-311c-4bd3-8a9f-439a902f49ab e07442f363330669ce2689e0bb1d9c02 { 'aliquot_tag': 'ALQ_113ba914', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04241.MethArray.Green.Tbm C3L-04241 AML Methylation Array tumor_bone_marrow CPT0259710002 203561450068_R05C01_Grn.idat 13676211 IDAT Green NA CPTAC3 18477cec-d0f7-42f5-8ec5-a2f19873bead fd5ae9f0a2b988e95658f450c524b312 { 'aliquot_tag': 'ALQ_252244d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04241.MethArray.Red.Tbm C3L-04241 AML Methylation Array tumor_bone_marrow CPT0259710002 203561450068_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 5c9d3c73-a701-42b9-9d1a-4b8ceddb9975 c80f9de0715971b50b99840f045eb625 { 'aliquot_tag': 'ALQ_252244d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04241.miRNA-Seq.Tbm C3L-04241 AML miRNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCGGCA_S48_L003_R1_001.unaln.bam 200898373 BAM unaligned CPTAC3 b7b2e8bc-ff9d-4bbf-9d6a-89ece0597b83 aa85056ee366e4d26bca491e87a1e9c0 { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04241.miRNA-Seq.Tbm.hg38 C3L-04241 AML miRNA-Seq tumor_bone_marrow CPT0259720002 25841b59-60e7-4405-ab21-7fd5caffbb78_mirnaseq_gdc_realn.bam 226675275 BAM harmonized CPTAC3 f92dfe36-b1fd-42f9-b1af-32ff6383c43c ad4151ac90212938f5eebcfab0a7f551 { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04241.RNA-Seq.chimeric.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 fe34ac31-f854-4b1c-8136-ced4a2a42c60.rna_seq.chimeric.gdc_realn.bam 31305773 BAM chimeric harmonized CPTAC3 de53b2de-dc60-4075-9b1e-06bdf0b55cfc 6f4e71bf64546baf1ab18a6bb7db62e1 { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04241.RNA-Seq.genomic.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 fe34ac31-f854-4b1c-8136-ced4a2a42c60.rna_seq.genomic.gdc_realn.bam 7675660808 BAM genomic harmonized CPTAC3 89a57622-e4d2-486a-98ea-3143eeeed597 2892a39cac6e232a889acd6bed630169 { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04241.RNA-Seq.R1_L006.Tbm C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0214_AH7FTJBBXY_ACCTTGGC-GGCCTCAT_S23_L006_R1_001.fastq.gz 3702110696 FASTQ R1_L006 unaligned CPTAC3 ad42ec5f-8d8a-4ead-81dd-6c3b8c515d6a 02c998e12985f4a5f348e17eb424210f { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04241.RNA-Seq.R2_L006.Tbm C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0214_AH7FTJBBXY_ACCTTGGC-GGCCTCAT_S23_L006_R2_001.fastq.gz 4122426618 FASTQ R2_L006 unaligned CPTAC3 c1340255-b0c0-47e4-b1ce-8886bff88015 71bb92d64009efda185402abcc9437c0 { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04241.RNA-Seq.transcriptome.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 fe34ac31-f854-4b1c-8136-ced4a2a42c60.rna_seq.transcriptome.gdc_realn.bam 7159351192 BAM transcriptome harmonized CPTAC3 660a3fa4-f43f-4749-9826-70c0ac3108d0 40b939041c7133d5766dbbdf9a42bf82 { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04241.RNA-Seq.chimeric.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 7b034b79-1a3e-4312-af3c-360cd9b264b0.rna_seq.chimeric.gdc_realn.bam 31300459 BAM chimeric harmonized CPTAC3 257bbf4d-ffff-4622-946d-2e8ad1c3426a 90e94d239545faba6dbcf0503d3de7ea { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04241.RNA-Seq.genomic.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 7b034b79-1a3e-4312-af3c-360cd9b264b0.rna_seq.genomic.gdc_realn.bam 7676738392 BAM genomic harmonized CPTAC3 ee1cd012-0f56-4b5e-8964-695153c4d291 94aecff8f6634e89518de77d7bf9eac8 { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04241.RNA-Seq.R1_L006.Tbm C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0214_AH7FTJBBXY_ACCTTGGC-GGCCTCAT_S23_L006_R1_001.fastq.gz 3702110696 FASTQ R1_L006 unaligned CPTAC3 ad42ec5f-8d8a-4ead-81dd-6c3b8c515d6a 02c998e12985f4a5f348e17eb424210f { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-04241.RNA-Seq.R2_L006.Tbm C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 190508_UNC31-K00269_0214_AH7FTJBBXY_ACCTTGGC-GGCCTCAT_S23_L006_R2_001.fastq.gz 4122426618 FASTQ R2_L006 unaligned CPTAC3 c1340255-b0c0-47e4-b1ce-8886bff88015 71bb92d64009efda185402abcc9437c0 { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-04241.RNA-Seq.transcriptome.Tbm.hg38 C3L-04241 AML RNA-Seq tumor_bone_marrow CPT0259720002 7b034b79-1a3e-4312-af3c-360cd9b264b0.rna_seq.transcriptome.gdc_realn.bam 8159988287 BAM transcriptome harmonized CPTAC3 f13d8f2b-8c2e-43a9-a9b9-70cbd3539a4c f1492813348229d3932d24b28dcd617a { 'aliquot_tag': 'ALQ_62823e08', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04241.WGS.Nbc C3L-04241 AML WGS buccal_normal CPT0259700003 CPT0259700003.WholeGenome.RP-1303.bam 81167848749 BAM aligned CPTAC3 5f3f298e-5365-4171-b289-96e0f9566b1a 80b88e1006b5330f063bb33efadf1069 { 'aliquot_tag': 'ALQ_6f455dfe', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04241.WGS.Nbc.hg38 C3L-04241 AML WGS buccal_normal CPT0259700003 d3d6f5df-52dd-408b-b664-4be0cf953c37_wgs_gdc_realn.bam 117181628293 BAM harmonized CPTAC3 70432235-b33a-4105-85d6-fc7d029cf3bd 0d6e886965b97c47905a8c9a74ab3ae3 { 'aliquot_tag': 'ALQ_6f455dfe', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04241.WGS.Tbm C3L-04241 AML WGS tumor_bone_marrow CPT0259710002 CPT0259710002.WholeGenome.RP-1303.bam 99486661609 BAM aligned CPTAC3 5c9ebcfd-88d6-4db7-9763-82d79a66bab7 0fd8ae3ee089788b53d618d0338c0c90 { 'aliquot_tag': 'ALQ_252244d8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -14985,11 +15900,11 @@ C3L-04242.MethArray.Green.Tbm C3L-04242 AML Methylation Array tumor_bone_marrow C3L-04242.MethArray.Red.Tbm C3L-04242 AML Methylation Array tumor_bone_marrow CPT0230840002 203561450030_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 62d5eb5d-a7a7-474e-a145-f54afba882e4 53935019f1de49b5853e424e307651b8 { 'aliquot_tag': 'ALQ_4f633529', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04242.miRNA-Seq.Tbm C3L-04242 AML miRNA-Seq tumor_bone_marrow CPT0230850002 190508_UNC31-K00269_0215_BH7FYKBBXY_CCAACA_S36_L002_R1_001.unaln.bam 248394139 BAM unaligned CPTAC3 1dbce217-6bac-4469-8921-d223bc90c48b 1a4c47783cd7223172c867d49b06683e { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04242.miRNA-Seq.Tbm.hg38 C3L-04242 AML miRNA-Seq tumor_bone_marrow CPT0230850002 5979bb73-5a43-425f-8a15-74af8233df0a_mirnaseq_gdc_realn.bam 274508068 BAM harmonized CPTAC3 0efc5385-0943-4744-8f81-507a64361729 82bdbbd8f5db7ff576cc386003adfc2e { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04242.RNA-Seq.chimeric.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 55ebd28d-6e2f-4b5c-a52c-6140a2a20d0e.rna_seq.chimeric.gdc_realn.bam 29213317 BAM chimeric harmonized CPTAC3 e473a0e6-8366-492f-b6f4-8eaf3f3292a5 c44937f058a2d4661e98cc6066fb230f { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04242.RNA-Seq.genomic.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 55ebd28d-6e2f-4b5c-a52c-6140a2a20d0e.rna_seq.genomic.gdc_realn.bam 6900644085 BAM genomic harmonized CPTAC3 d17852b3-7f25-4fff-8439-7ed98684086e ae636776939eeb17223ef3e60a586a05 { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04242.RNA-Seq.R1_L008.Tbm C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 190426_UNC32-K00270_0167_AH7CK7BBXY_GATTCTGC-GACGAGAG_S26_L008_R1_001.fastq.gz 3319720826 FASTQ R1_L008 unaligned CPTAC3 63878f36-065b-45cc-91ea-b02efdc596e7 58c7bd9a3c0f3f35261ced00bca07e5b { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04242.RNA-Seq.R2_L008.Tbm C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 190426_UNC32-K00270_0167_AH7CK7BBXY_GATTCTGC-GACGAGAG_S26_L008_R2_001.fastq.gz 3758726347 FASTQ R2_L008 unaligned CPTAC3 a20b9a94-48ff-4cfc-bb4e-d6fa58bd57bf f22c5fcccb82f363e06305455d6e111e { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04242.RNA-Seq.transcriptome.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 55ebd28d-6e2f-4b5c-a52c-6140a2a20d0e.rna_seq.transcriptome.gdc_realn.bam 8106520637 BAM transcriptome harmonized CPTAC3 7f41f905-32a0-46b8-bf72-12da52882ce0 6043bcd748ad4fc21a3adf9d6bb01747 { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04242.RNA-Seq.chimeric.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 af5314eb-629b-497c-89bd-08d43283775c.rna_seq.chimeric.gdc_realn.bam 29200234 BAM chimeric harmonized CPTAC3 40f045c6-8262-4db0-bfa2-af1e355c8857 12faef5361a909820fc621be146e9248 { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04242.RNA-Seq.genomic.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 af5314eb-629b-497c-89bd-08d43283775c.rna_seq.genomic.gdc_realn.bam 6901440569 BAM genomic harmonized CPTAC3 81c059a5-52e9-438e-95ff-96340adf8d22 c10668fab2983f2cc82c8e987fb9ee78 { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04242.RNA-Seq.R1_L008.Tbm C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 190426_UNC32-K00270_0167_AH7CK7BBXY_GATTCTGC-GACGAGAG_S26_L008_R1_001.fastq.gz 3319720826 FASTQ R1_L008 unaligned CPTAC3 63878f36-065b-45cc-91ea-b02efdc596e7 58c7bd9a3c0f3f35261ced00bca07e5b { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-04242.RNA-Seq.R2_L008.Tbm C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 190426_UNC32-K00270_0167_AH7CK7BBXY_GATTCTGC-GACGAGAG_S26_L008_R2_001.fastq.gz 3758726347 FASTQ R2_L008 unaligned CPTAC3 a20b9a94-48ff-4cfc-bb4e-d6fa58bd57bf f22c5fcccb82f363e06305455d6e111e { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-04242.RNA-Seq.transcriptome.Tbm.hg38 C3L-04242 AML RNA-Seq tumor_bone_marrow CPT0230850002 af5314eb-629b-497c-89bd-08d43283775c.rna_seq.transcriptome.gdc_realn.bam 9236262753 BAM transcriptome harmonized CPTAC3 04638d91-b320-409d-bc8a-aa1e2d5950f4 2b3025d6298e717f5b1234bb84809b47 { 'aliquot_tag': 'ALQ_72031c99', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04242.WGS.Nbc C3L-04242 AML WGS buccal_normal CPT0230940001 CPT0230940001.WholeGenome.RP-1303.bam 83574991047 BAM aligned CPTAC3 03eb172b-29c0-4bb3-8379-aff99e3802ec 772cb0d0f4e1344a1f61dfc3da2e9bc9 { 'aliquot_tag': 'ALQ_1d36b736', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04242.WGS.Nbc.hg38 C3L-04242 AML WGS buccal_normal CPT0230940001 dd99c0f7-e658-4da0-91c9-7e3d92929307_wgs_gdc_realn.bam 117643143494 BAM harmonized CPTAC3 716018d2-bee2-43e5-9184-12dba57c70a6 27d9ce8090039d394b488ed569b0f2b4 { 'aliquot_tag': 'ALQ_1d36b736', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04242.WGS.Tbm C3L-04242 AML WGS tumor_bone_marrow CPT0230840002 CPT0230840002.WholeGenome.RP-1303.bam 63895492486 BAM aligned CPTAC3 cd7248d8-56c6-4d69-ad83-dcfcf6e6dfee 39f3315cdb60fdf53d03daf7ec8e6798 { 'aliquot_tag': 'ALQ_4f633529', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -15002,11 +15917,11 @@ C3L-04244.MethArray.Green.Tbm C3L-04244 AML Methylation Array tumor_bone_marrow C3L-04244.MethArray.Red.Tbm C3L-04244 AML Methylation Array tumor_bone_marrow CPT0259780002 203561620087_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 f51aceb1-8ee6-4c20-9135-355dac8f96a7 97db087fe6799ffada8d24e660d07b26 { 'aliquot_tag': 'ALQ_283226a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04244.miRNA-Seq.Tbm C3L-04244 AML miRNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCATTC_S45_L002_R1_001.unaln.bam 156614325 BAM unaligned CPTAC3 3c7bf44b-5b09-4a3c-bcb7-428a500ac022 0f42279a298b7fa0098e381c303c6bd2 { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04244.miRNA-Seq.Tbm.hg38 C3L-04244 AML miRNA-Seq tumor_bone_marrow CPT0259790002 fad3bf5e-4e8d-4b22-92c6-21baefa32138_mirnaseq_gdc_realn.bam 173576447 BAM harmonized CPTAC3 9f5882ee-f636-4684-8073-364de737abdb 9d8092d8baca79a3a6e2efe93d3787cc { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04244.RNA-Seq.chimeric.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 2d072232-5c52-4295-bb28-e36664e24146.rna_seq.chimeric.gdc_realn.bam 29911648 BAM chimeric harmonized CPTAC3 2034df3a-2f94-4002-8abc-2024ce606703 04f180d0b9683e25638632d8f66ff589 { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04244.RNA-Seq.genomic.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 2d072232-5c52-4295-bb28-e36664e24146.rna_seq.genomic.gdc_realn.bam 8029286907 BAM genomic harmonized CPTAC3 ebb788a0-ac0d-44ab-8a5c-d4e80f169c9b 927714d6dcf04e5f842c06df00cfa202 { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04244.RNA-Seq.R1_L006.Tbm C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0214_AH7FTJBBXY_ATGGCATG-AAGGTACC_S20_L006_R1_001.fastq.gz 3815423785 FASTQ R1_L006 unaligned CPTAC3 150db7f3-283f-45ee-935c-7bf039676f83 b055eef7ce1329326a4bd98c56d9d653 { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04244.RNA-Seq.R2_L006.Tbm C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0214_AH7FTJBBXY_ATGGCATG-AAGGTACC_S20_L006_R2_001.fastq.gz 4173033955 FASTQ R2_L006 unaligned CPTAC3 dec8586b-52ac-42b0-89e7-80a0aeec0932 ed0435b38037b659723ce4c44d0ad342 { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04244.RNA-Seq.transcriptome.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 2d072232-5c52-4295-bb28-e36664e24146.rna_seq.transcriptome.gdc_realn.bam 7297409135 BAM transcriptome harmonized CPTAC3 76a05ab2-9e09-4604-9a7d-292b13fcd896 4f18eb1138c4aa1407c900b51a96a7e6 { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04244.RNA-Seq.chimeric.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 9da73d70-4a47-4d33-93b2-f8214efe466a.rna_seq.chimeric.gdc_realn.bam 29900709 BAM chimeric harmonized CPTAC3 365be7e5-d1d0-40cb-9d52-babef3953301 95952db098d372bc96f948afe37e38ce { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04244.RNA-Seq.genomic.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 9da73d70-4a47-4d33-93b2-f8214efe466a.rna_seq.genomic.gdc_realn.bam 8030250235 BAM genomic harmonized CPTAC3 f5bc0ea8-208c-4dba-b61f-7c40d256ecd7 eee357fca1eb9e2b4e44fbb333db43cf { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04244.RNA-Seq.R1_L006.Tbm C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0214_AH7FTJBBXY_ATGGCATG-AAGGTACC_S20_L006_R1_001.fastq.gz 3815423785 FASTQ R1_L006 unaligned CPTAC3 150db7f3-283f-45ee-935c-7bf039676f83 b055eef7ce1329326a4bd98c56d9d653 { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-04244.RNA-Seq.R2_L006.Tbm C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 190508_UNC31-K00269_0214_AH7FTJBBXY_ATGGCATG-AAGGTACC_S20_L006_R2_001.fastq.gz 4173033955 FASTQ R2_L006 unaligned CPTAC3 dec8586b-52ac-42b0-89e7-80a0aeec0932 ed0435b38037b659723ce4c44d0ad342 { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-04244.RNA-Seq.transcriptome.Tbm.hg38 C3L-04244 AML RNA-Seq tumor_bone_marrow CPT0259790002 9da73d70-4a47-4d33-93b2-f8214efe466a.rna_seq.transcriptome.gdc_realn.bam 8340430953 BAM transcriptome harmonized CPTAC3 2d297e8e-d812-4824-9a11-6d6497ce5e4b da26c36eda11ee2e368132faa9a4c16a { 'aliquot_tag': 'ALQ_15520f19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04244.WGS.Tbm C3L-04244 AML WGS tumor_bone_marrow CPT0259780002 CPT0259780002.WholeGenome.RP-1303.bam 66310918578 BAM aligned CPTAC3 b2b4884f-422d-464f-a705-e98bb52022f6 a9aca99343504522c34b6d67c7dd49ae { 'aliquot_tag': 'ALQ_283226a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04244.WGS.Tbm.hg38 C3L-04244 AML WGS tumor_bone_marrow CPT0259780002 bbb32038-b637-46bd-8bd8-73d8628a7605_wgs_gdc_realn.bam 97265442765 BAM harmonized CPTAC3 a290b432-363b-461f-9b1e-93f6508dce07 c190eac1960e18cbddc41c69c7e0bb62 { 'aliquot_tag': 'ALQ_283226a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04244.WXS.Nbc C3L-04244 AML WXS buccal_normal CPT0259770003 CPT0259770003.WholeExome.RP-1303.bam 27888814376 BAM aligned CPTAC3 ed4e27a8-4d52-495e-bf77-db933c583032 e6d3f5c96e6af956d4eaf657c4b3c4ad { 'aliquot_tag': 'ALQ_dd6581ee', 'gdc_sample_type': 'Buccal Cell Normal' } @@ -15017,11 +15932,11 @@ C3L-04245.MethArray.Green.Tbm C3L-04245 AML Methylation Array tumor_bone_marrow C3L-04245.MethArray.Red.Tbm C3L-04245 AML Methylation Array tumor_bone_marrow CPT0259920002 203561450046_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 903b16da-a645-40b4-8066-e001895f5e87 375dd0bd88167f2a18a9805656ec2ce1 { 'aliquot_tag': 'ALQ_58885f78', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04245.miRNA-Seq.Tbm C3L-04245 AML miRNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCCCGA_S46_L002_R1_001.unaln.bam 223199404 BAM unaligned CPTAC3 8ff36bc5-b771-4cce-961b-ff35fd9d2408 0777e1eae488b8119ca500c03ebc8216 { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04245.miRNA-Seq.Tbm.hg38 C3L-04245 AML miRNA-Seq tumor_bone_marrow CPT0259930002 c95192a1-679e-421c-a70c-f412243f6104_mirnaseq_gdc_realn.bam 248921331 BAM harmonized CPTAC3 30cf7bd5-1d7c-4045-9222-870eb1ea847f fecd511e325e46b8d4b6592a56ff341b { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04245.RNA-Seq.chimeric.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 b0651e3f-3548-4c54-b3a6-f98e40f1c873.rna_seq.chimeric.gdc_realn.bam 33633925 BAM chimeric harmonized CPTAC3 da60c396-6765-4fd6-9675-f938f29b8962 cb3d8e3649e7f690f21080d3993adb22 { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04245.RNA-Seq.genomic.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 b0651e3f-3548-4c54-b3a6-f98e40f1c873.rna_seq.genomic.gdc_realn.bam 7856517222 BAM genomic harmonized CPTAC3 59209ff4-b1a1-4b30-836d-7beac10236be 3e24ce77357efd008f7969efcbb2292b { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04245.RNA-Seq.R1_L006.Tbm C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0214_AH7FTJBBXY_GCAATGCA-GGAACGTT_S21_L006_R1_001.fastq.gz 4001270026 FASTQ R1_L006 unaligned CPTAC3 6fb816c2-0f0c-4635-9d44-cb40175986d6 20bbd0a49b3a6faf759694bf5e0d32e4 { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04245.RNA-Seq.R2_L006.Tbm C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0214_AH7FTJBBXY_GCAATGCA-GGAACGTT_S21_L006_R2_001.fastq.gz 4305412368 FASTQ R2_L006 unaligned CPTAC3 aa6df772-e18a-47b2-b488-7a5c2b0b6cbf a17a3e4150a25ec28e4ceb09f5face0b { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04245.RNA-Seq.transcriptome.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 b0651e3f-3548-4c54-b3a6-f98e40f1c873.rna_seq.transcriptome.gdc_realn.bam 7894586037 BAM transcriptome harmonized CPTAC3 e16f38d5-25b5-4c42-a2f4-88df1633c8e2 f0a78eae8de5cfd71c686fdf2130d8ea { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04245.RNA-Seq.chimeric.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 760c45e0-88f2-4291-b158-63ce2c416c74.rna_seq.chimeric.gdc_realn.bam 33616195 BAM chimeric harmonized CPTAC3 ab6ac690-1153-4e5c-8da5-b5e5cb06d938 0e793f32e0f85ca695fbe717dd83efb9 { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04245.RNA-Seq.genomic.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 760c45e0-88f2-4291-b158-63ce2c416c74.rna_seq.genomic.gdc_realn.bam 7857182380 BAM genomic harmonized CPTAC3 6bedc81e-0f78-4dd9-9f08-10f71bf31269 b8cc9a2f885d21330c6b49057a6894de { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04245.RNA-Seq.R1_L006.Tbm C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0214_AH7FTJBBXY_GCAATGCA-GGAACGTT_S21_L006_R1_001.fastq.gz 4001270026 FASTQ R1_L006 unaligned CPTAC3 6fb816c2-0f0c-4635-9d44-cb40175986d6 20bbd0a49b3a6faf759694bf5e0d32e4 { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-04245.RNA-Seq.R2_L006.Tbm C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 190508_UNC31-K00269_0214_AH7FTJBBXY_GCAATGCA-GGAACGTT_S21_L006_R2_001.fastq.gz 4305412368 FASTQ R2_L006 unaligned CPTAC3 aa6df772-e18a-47b2-b488-7a5c2b0b6cbf a17a3e4150a25ec28e4ceb09f5face0b { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-04245.RNA-Seq.transcriptome.Tbm.hg38 C3L-04245 AML RNA-Seq tumor_bone_marrow CPT0259930002 760c45e0-88f2-4291-b158-63ce2c416c74.rna_seq.transcriptome.gdc_realn.bam 9060230959 BAM transcriptome harmonized CPTAC3 b314e98e-b924-4451-b339-cba2ee391512 83d4c7bb3a65dd05c2b1e07055b890f3 { 'aliquot_tag': 'ALQ_65e876c8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04245.WGS.Nbc C3L-04245 AML WGS buccal_normal CPT0259910003 CPT0259910003.WholeGenome.RP-1303.bam 69235047437 BAM aligned CPTAC3 0712e1b6-9752-4162-9110-0958993ed412 db2af2ac276103eaaca23fb64f7c2700 { 'aliquot_tag': 'ALQ_682f153e', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04245.WGS.Nbc.hg38 C3L-04245 AML WGS buccal_normal CPT0259910003 8899c961-0df9-45dd-ab06-13a0365ac9cc_wgs_gdc_realn.bam 107260033742 BAM harmonized CPTAC3 9a88768d-4af8-464d-ad42-eb8a9ae6b7af dd0441eb6a7ea5801ac1efa3cb528dde { 'aliquot_tag': 'ALQ_682f153e', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04245.WGS.Tbm C3L-04245 AML WGS tumor_bone_marrow CPT0259920002 CPT0259920002.WholeGenome.RP-1303.bam 64636149051 BAM aligned CPTAC3 db778e02-7829-4852-b2f2-79f9741c7b61 85c1bca2b295547dfed7b7fb127606a5 { 'aliquot_tag': 'ALQ_58885f78', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -15034,11 +15949,11 @@ C3L-04250.MethArray.Green.Tbm C3L-04250 AML Methylation Array tumor_bone_marrow C3L-04250.MethArray.Red.Tbm C3L-04250 AML Methylation Array tumor_bone_marrow CPT0260060002 203561450006_R04C01_Red.idat 13676236 IDAT Red NA CPTAC3 2f7a1135-69ea-4a6c-8b56-8e95157a6f36 8c1f274a5686d3469d0c676ec8679b5c { 'aliquot_tag': 'ALQ_9110ea40', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04250.miRNA-Seq.Tbm C3L-04250 AML miRNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0215_BH7FYKBBXY_TCGAAG_S47_L003_R1_001.unaln.bam 172034425 BAM unaligned CPTAC3 f33568f8-e132-498b-8877-706cf357a015 0698748b709467779ccf78fddb23dcbf { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04250.miRNA-Seq.Tbm.hg38 C3L-04250 AML miRNA-Seq tumor_bone_marrow CPT0260070002 13320cc8-fd6f-4c9b-b6e4-83d04a93bddf_mirnaseq_gdc_realn.bam 198259229 BAM harmonized CPTAC3 27236254-102f-449b-9111-d5c1315d2308 e2471aa714aa39826c9c5e39f19a6960 { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04250.RNA-Seq.chimeric.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 1dd1ad48-9127-497d-809e-a329a4019664.rna_seq.chimeric.gdc_realn.bam 29922823 BAM chimeric harmonized CPTAC3 7298b79c-ea73-45af-8c6f-2328e4104600 d67b985b923cb0986d6805d7594418fa { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04250.RNA-Seq.genomic.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 1dd1ad48-9127-497d-809e-a329a4019664.rna_seq.genomic.gdc_realn.bam 7480044105 BAM genomic harmonized CPTAC3 8b6f07d3-09e4-4fe9-a48e-ba80c80ccfdf 03f5ae478250963afc27f930c5ae7b01 { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04250.RNA-Seq.R1_L006.Tbm C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0214_AH7FTJBBXY_GTTCCAAT-AATTCTGC_S22_L006_R1_001.fastq.gz 3689705206 FASTQ R1_L006 unaligned CPTAC3 ddaa1a34-5387-44c9-9039-aaa071dc213d 81f63fcec148f8eaf0c8b68b4b238dc9 { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04250.RNA-Seq.R2_L006.Tbm C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0214_AH7FTJBBXY_GTTCCAAT-AATTCTGC_S22_L006_R2_001.fastq.gz 3986920316 FASTQ R2_L006 unaligned CPTAC3 b0efb625-e897-4171-9c3d-19fbcc95e68d 14a299a8ec54a6ccc7ef11071ca2d89e { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04250.RNA-Seq.transcriptome.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 1dd1ad48-9127-497d-809e-a329a4019664.rna_seq.transcriptome.gdc_realn.bam 6878967507 BAM transcriptome harmonized CPTAC3 f8451e2c-ac66-4fee-948b-072e1e46ab95 bcb85c81e6493091b33e72a13beb4c54 { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04250.RNA-Seq.chimeric.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 fe5fc61c-34fc-4f20-9910-65fbab5f7f98.rna_seq.chimeric.gdc_realn.bam 29917306 BAM chimeric harmonized CPTAC3 997c5ba1-7e7d-4737-9416-20be5cb5be8f 8369e8663871d534b0b292e7ed75998b { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04250.RNA-Seq.genomic.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 fe5fc61c-34fc-4f20-9910-65fbab5f7f98.rna_seq.genomic.gdc_realn.bam 7480507952 BAM genomic harmonized CPTAC3 00de3a43-f673-45df-864d-a80180055802 4774e2f4840ca1cfbf02c5c90d34e695 { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04250.RNA-Seq.R1_L006.Tbm C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0214_AH7FTJBBXY_GTTCCAAT-AATTCTGC_S22_L006_R1_001.fastq.gz 3689705206 FASTQ R1_L006 unaligned CPTAC3 ddaa1a34-5387-44c9-9039-aaa071dc213d 81f63fcec148f8eaf0c8b68b4b238dc9 { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-04250.RNA-Seq.R2_L006.Tbm C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 190508_UNC31-K00269_0214_AH7FTJBBXY_GTTCCAAT-AATTCTGC_S22_L006_R2_001.fastq.gz 3986920316 FASTQ R2_L006 unaligned CPTAC3 b0efb625-e897-4171-9c3d-19fbcc95e68d 14a299a8ec54a6ccc7ef11071ca2d89e { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-04250.RNA-Seq.transcriptome.Tbm.hg38 C3L-04250 AML RNA-Seq tumor_bone_marrow CPT0260070002 fe5fc61c-34fc-4f20-9910-65fbab5f7f98.rna_seq.transcriptome.gdc_realn.bam 7907486077 BAM transcriptome harmonized CPTAC3 6a2968c6-8ac9-4ca4-a19d-e1e6e01868d1 35def27efb3812ddb1d3b7044fafa7ea { 'aliquot_tag': 'ALQ_ac70c3f0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04250.WGS.Nbc C3L-04250 AML WGS buccal_normal CPT0260050003 CPT0260050003.WholeGenome.RP-1303.bam 72419323247 BAM aligned CPTAC3 93daa485-327f-477a-b2b8-5bcc8f7ea031 9c9c6e61f745263925dea1279a71fb86 { 'aliquot_tag': 'ALQ_a1b7a006', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04250.WGS.Nbc.hg38 C3L-04250 AML WGS buccal_normal CPT0260050003 0a9cd9ca-4e79-432a-b867-657633a54a05_wgs_gdc_realn.bam 104723073342 BAM harmonized CPTAC3 d83cbe0e-d6d0-4fc4-a410-dbad8697ba51 b41a9c69074b54e4ef05fea6f886d5c9 { 'aliquot_tag': 'ALQ_a1b7a006', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04250.WGS.Tbm C3L-04250 AML WGS tumor_bone_marrow CPT0260060002 CPT0260060002.WholeGenome.RP-1303.bam 64368595881 BAM aligned CPTAC3 cad468d2-0566-4b25-977c-8ad12f625d4b d671d67dec2d6a47593bd4fee6e93722 { 'aliquot_tag': 'ALQ_9110ea40', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -15050,24 +15965,29 @@ C3L-04250.WXS.Tbm.hg38 C3L-04250 AML WXS tumor_bone_marrow CPT0260060002 a1f75b6 C3L-04263.MethArray.Green.Tbm C3L-04263 AML Methylation Array tumor_bone_marrow CPT0302480002 205555380155_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a4ac7b0a-1a05-4f04-bd52-70a7fdb03336 63016a8cfc7a584cb43dce90a8a68cff { 'aliquot_tag': 'ALQ_f33a1ada', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04263.MethArray.Red.Tbm C3L-04263 AML Methylation Array tumor_bone_marrow CPT0302480002 205555380155_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 c2eb8ae6-b2ab-4c8b-bcbc-306f3ec72f6c b6b48a91f549573ac0ecfb03ad85852d { 'aliquot_tag': 'ALQ_f33a1ada', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04263.miRNA-Seq.Tbm C3L-04263 AML miRNA-Seq tumor_bone_marrow CPT0302490002 210702_UNC32-K00270_0289_AHKJ22BBXY_AGTCAA_S3_L001_R1_001.unaln.bam 373583556 BAM unaligned CPTAC3 8b0e3b26-b65f-4ee1-a18b-62890464eb00 22944e03df6b64585bc1de862c7fed55 { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04263.RNA-Seq.chimeric.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 d0e69101-fcc6-4fd4-928a-66bd03a36545.rna_seq.chimeric.gdc_realn.bam 153751067 BAM chimeric harmonized CPTAC3 e25b5131-6c37-4281-92e0-39c2e2ae0c28 61c876ee651b37a4f5741cc666a359f2 { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04263.RNA-Seq.genomic.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 d0e69101-fcc6-4fd4-928a-66bd03a36545.rna_seq.genomic.gdc_realn.bam 7377573882 BAM genomic harmonized CPTAC3 e7ae4c08-ae40-449b-919d-12e5905dd852 ad0c84b575394eccb7dc0ec2021e7494 { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04263.RNA-Seq.R1_L005.Tbm C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 210319_UNC31-K00269_0296_AHKT37BBXY_CGGAACTG-CACTACGA_S18_L005_R1_001.fastq.gz 3811517383 FASTQ R1_L005 unaligned CPTAC3 50d95169-c9e1-4ace-b490-77bb93633130 9fc5c7975f3d820259954a5feecf3a7c { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04263.RNA-Seq.R2_L005.Tbm C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 210319_UNC31-K00269_0296_AHKT37BBXY_CGGAACTG-CACTACGA_S18_L005_R2_001.fastq.gz 4043219750 FASTQ R2_L005 unaligned CPTAC3 e5dbbe15-28a7-4d3b-968c-08bc5b42d514 0af88ae5fafcda25e9df09571fc24e56 { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04263.RNA-Seq.transcriptome.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 d0e69101-fcc6-4fd4-928a-66bd03a36545.rna_seq.transcriptome.gdc_realn.bam 7856037433 BAM transcriptome harmonized CPTAC3 86262f18-76f7-47f0-973b-63825c5e792f 5b5bc480063484f9f09fffd36b96d054 { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04263.miRNA-Seq.Tbm.hg38 C3L-04263 AML miRNA-Seq tumor_bone_marrow CPT0302490002 0f266214-ee2e-4331-bf4d-27eec0fcf923_mirnaseq_gdc_realn.bam 398824637 BAM harmonized CPTAC3 5052b32a-9208-43f1-af27-a1d6ecb1183d bbc6f3115220826e12a999f089129727 { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04263.RNA-Seq.chimeric.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 57db2ff7-4aa0-461c-b3f8-70ff04ad3114.rna_seq.chimeric.gdc_realn.bam 153756226 BAM chimeric harmonized CPTAC3 6266f05d-cf44-41f7-b008-7dfe97e4e2d8 faaecb83b42f7710a54ee138af2b3b39 { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04263.RNA-Seq.genomic.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 57db2ff7-4aa0-461c-b3f8-70ff04ad3114.rna_seq.genomic.gdc_realn.bam 7384893748 BAM genomic harmonized CPTAC3 205098c5-5e9d-424e-8f41-007bd0d9013b 82fd79b682a67d205331cb97bff905e8 { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04263.RNA-Seq.R1_L005.Tbm C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 210319_UNC31-K00269_0296_AHKT37BBXY_CGGAACTG-CACTACGA_S18_L005_R1_001.fastq.gz 3811517383 FASTQ R1_L005 unaligned CPTAC3 50d95169-c9e1-4ace-b490-77bb93633130 9fc5c7975f3d820259954a5feecf3a7c { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-04263.RNA-Seq.R2_L005.Tbm C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 210319_UNC31-K00269_0296_AHKT37BBXY_CGGAACTG-CACTACGA_S18_L005_R2_001.fastq.gz 4043219750 FASTQ R2_L005 unaligned CPTAC3 e5dbbe15-28a7-4d3b-968c-08bc5b42d514 0af88ae5fafcda25e9df09571fc24e56 { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-04263.RNA-Seq.transcriptome.Tbm.hg38 C3L-04263 AML RNA-Seq tumor_bone_marrow CPT0302490002 57db2ff7-4aa0-461c-b3f8-70ff04ad3114.rna_seq.transcriptome.gdc_realn.bam 9076705787 BAM transcriptome harmonized CPTAC3 5087e4e6-ca6f-4c33-8a3e-165a3d46f61a 6d86b008e7616ee724a1a2f9d00bd18b { 'aliquot_tag': 'ALQ_ce5a336a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04263.WGS.Nbc C3L-04263 AML WGS buccal_normal CPT0302580001 CPT0302580001.WholeGenome.RP-2158.bam 44190726818 BAM aligned CPTAC3 79ca61b8-8714-4d6d-82d5-48b40189664c 0c0f15aefc4ffdcffdaacf31b70ebd8f { 'aliquot_tag': 'ALQ_a16f98c5', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04263.WGS.Nbc.hg38 C3L-04263 AML WGS buccal_normal CPT0302580001 74b5645c-6c73-4d3f-b50a-22231bbbb212_wgs_gdc_realn.bam 128323112228 BAM harmonized CPTAC3 142d091a-aba1-4173-8c45-567d7ce4ee7f d8ccb0feb9c3be772d3cb450a0588f70 { 'aliquot_tag': 'ALQ_a16f98c5', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04263.WGS.Tbm C3L-04263 AML WGS tumor_bone_marrow CPT0302480002 CPT0302480002.WholeGenome.RP-2158.bam 52129382369 BAM aligned CPTAC3 b1a92ab2-4108-42bf-8fe7-65cb7142179f 9a3a1b83edec53a408ad3ce87ec3b1ab { 'aliquot_tag': 'ALQ_f33a1ada', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04263.WGS.Tbm.hg38 C3L-04263 AML WGS tumor_bone_marrow CPT0302480002 27ddeccb-12f9-47ce-b3cf-ee4ccb2d6b16_wgs_gdc_realn.bam 153021383594 BAM harmonized CPTAC3 fdae0859-8401-4b76-8d57-bb6607a778c8 f51c1158d21881dea927a42ea664813e { 'aliquot_tag': 'ALQ_f33a1ada', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04263.WXS.Nbc C3L-04263 AML WXS buccal_normal CPT0302580001 CPT0302580001.WholeExome.RP-1303.bam 22994863044 BAM aligned CPTAC3 835126de-ec66-4001-9667-d72ca715b19d cc0e08520b5696fac86d3efdadb2ce44 { 'aliquot_tag': 'ALQ_a16f98c5', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04263.WXS.Nbc.hg38 C3L-04263 AML WXS buccal_normal CPT0302580001 74b5645c-6c73-4d3f-b50a-22231bbbb212_wxs_gdc_realn.bam 32206402604 BAM harmonized CPTAC3 812bb6f6-a281-4876-b300-5353cea468aa f98151bd25a0c5b3b7fd8e143b497138 { 'aliquot_tag': 'ALQ_a16f98c5', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04263.WXS.Tbm C3L-04263 AML WXS tumor_bone_marrow CPT0302480002 CPT0302480002.WholeExome.RP-1303.bam 27622262879 BAM aligned CPTAC3 605dac6b-49b9-4cf2-b5ee-e4abcb66f773 51541505daacbc8ba2c3136f0a3e26b6 { 'aliquot_tag': 'ALQ_f33a1ada', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04263.WXS.Tbm.hg38 C3L-04263 AML WXS tumor_bone_marrow CPT0302480002 27ddeccb-12f9-47ce-b3cf-ee4ccb2d6b16_wxs_gdc_realn.bam 39100014434 BAM harmonized CPTAC3 9ef14de8-459f-4868-9ebc-f369eeedc6ff 63aa024fbcd2dfbca8761420edeae58b { 'aliquot_tag': 'ALQ_f33a1ada', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04265.MethArray.Green.Tbm C3L-04265 AML Methylation Array tumor_bone_marrow CPT0230980002 203561450102_R05C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b4ce4486-20c6-4d80-a1c0-c786ea7b2bcc af6bbae2306035b75bdd94030f06bda8 { 'aliquot_tag': 'ALQ_41cf0b8d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04265.MethArray.Red.Tbm C3L-04265 AML Methylation Array tumor_bone_marrow CPT0230980002 203561450102_R05C01_Red.idat 13676236 IDAT Red NA CPTAC3 c92414fe-493f-457d-82b2-fd95e0cecdee 9ced579a9e780ced89144b720d5dc4cd { 'aliquot_tag': 'ALQ_41cf0b8d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04265.miRNA-Seq.Tbm C3L-04265 AML miRNA-Seq tumor_bone_marrow CPT0231000002 190508_UNC31-K00269_0215_BH7FYKBBXY_CGGAAT_S37_L002_R1_001.unaln.bam 269073776 BAM unaligned CPTAC3 b9cc71f0-f4ff-45e5-822a-d9ab70266015 fbd1e1375e8f03899ead4a6c104cb1df { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04265.miRNA-Seq.Tbm.hg38 C3L-04265 AML miRNA-Seq tumor_bone_marrow CPT0231000002 d8c97a7b-61ed-4118-bde8-edbeaaf898f4_mirnaseq_gdc_realn.bam 302941218 BAM harmonized CPTAC3 d6763eaa-d1c8-421d-b3ad-d913c339a556 f8ade8a88725b1329d836633ca0ff655 { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04265.RNA-Seq.chimeric.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 7642aa14-3e5a-4c8f-af3c-2eda6d5405dc.rna_seq.chimeric.gdc_realn.bam 36310873 BAM chimeric harmonized CPTAC3 4e96321e-c656-48cc-ad44-d342bd2c29d7 22e7e4fc67a8976507796abf913ecef0 { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04265.RNA-Seq.genomic.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 7642aa14-3e5a-4c8f-af3c-2eda6d5405dc.rna_seq.genomic.gdc_realn.bam 8839002515 BAM genomic harmonized CPTAC3 b850cc20-8bb8-4c06-a14e-f8be52349713 c9f554b30830a910d0f76ee470e15acb { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04265.RNA-Seq.R1_L006.Tbm C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 190501_UNC31-K00269_0213_BH5JYFBBXY_TCGTAGTG-AGACTTGG_S21_L006_R1_001.fastq.gz 4310509333 FASTQ R1_L006 unaligned CPTAC3 53af00b1-31cd-4f05-9545-fd6eefaee541 4ae1fff5161cbc220f88e4614d02cb8c { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04265.RNA-Seq.R2_L006.Tbm C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 190501_UNC31-K00269_0213_BH5JYFBBXY_TCGTAGTG-AGACTTGG_S21_L006_R2_001.fastq.gz 4843139994 FASTQ R2_L006 unaligned CPTAC3 ab360685-deb0-47d2-8ae9-858cd090f7f3 661249850d28af6ab200215296f9c325 { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04265.RNA-Seq.transcriptome.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 7642aa14-3e5a-4c8f-af3c-2eda6d5405dc.rna_seq.transcriptome.gdc_realn.bam 8794967628 BAM transcriptome harmonized CPTAC3 acf7427d-958d-4a57-8d0b-428c50d77f41 69e8982281699db9ca87f16bd58a433d { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04265.RNA-Seq.chimeric.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 99a40062-c6ce-4c7f-ba38-5ad1cc36c1ef.rna_seq.chimeric.gdc_realn.bam 36309269 BAM chimeric harmonized CPTAC3 a839acad-3f7e-499d-b15b-28fc528eee19 73fb7d280d6949e02d328f5604f75a3a { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04265.RNA-Seq.genomic.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 99a40062-c6ce-4c7f-ba38-5ad1cc36c1ef.rna_seq.genomic.gdc_realn.bam 8837126874 BAM genomic harmonized CPTAC3 87bd2380-b56e-4661-8407-32aaed05effc 9f4e7383594a4024aeeb4cf81f646a9c { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04265.RNA-Seq.R1_L006.Tbm C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 190501_UNC31-K00269_0213_BH5JYFBBXY_TCGTAGTG-AGACTTGG_S21_L006_R1_001.fastq.gz 4310509333 FASTQ R1_L006 unaligned CPTAC3 53af00b1-31cd-4f05-9545-fd6eefaee541 4ae1fff5161cbc220f88e4614d02cb8c { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-04265.RNA-Seq.R2_L006.Tbm C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 190501_UNC31-K00269_0213_BH5JYFBBXY_TCGTAGTG-AGACTTGG_S21_L006_R2_001.fastq.gz 4843139994 FASTQ R2_L006 unaligned CPTAC3 ab360685-deb0-47d2-8ae9-858cd090f7f3 661249850d28af6ab200215296f9c325 { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-04265.RNA-Seq.transcriptome.Tbm.hg38 C3L-04265 AML RNA-Seq tumor_bone_marrow CPT0231000002 99a40062-c6ce-4c7f-ba38-5ad1cc36c1ef.rna_seq.transcriptome.gdc_realn.bam 9992097480 BAM transcriptome harmonized CPTAC3 8c246866-dd21-4d67-822e-7df7a39710ed f07b19fc8c41b01b8e774d45a4519b5a { 'aliquot_tag': 'ALQ_f0c71a30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04265.WGS.Nbc C3L-04265 AML WGS buccal_normal CPT0231080001 CPT0231080001.WholeGenome.RP-1303.bam 79314045664 BAM aligned CPTAC3 42f29cdd-a55c-4a70-a7cb-6424fd59ae0b 228abc28784d41dbf662f7b465749bf3 { 'aliquot_tag': 'ALQ_59be004b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04265.WGS.Nbc.hg38 C3L-04265 AML WGS buccal_normal CPT0231080001 f5de7dc4-bb2a-4889-9d44-b2061d736bfa_wgs_gdc_realn.bam 114103636308 BAM harmonized CPTAC3 c86b8d05-0faf-48e5-a3db-53eefdfd6cd4 264f8322142dc0f9e00e23f698a7d913 { 'aliquot_tag': 'ALQ_59be004b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04265.WGS.Tbm C3L-04265 AML WGS tumor_bone_marrow CPT0230980002 CPT0230980002.WholeGenome.RP-1303.bam 68601861144 BAM aligned CPTAC3 699161d3-6aaa-4e16-8b1b-4614d836cb91 ea8d0b6c05dee40feecccb8b34e29c89 { 'aliquot_tag': 'ALQ_41cf0b8d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -15076,24 +15996,38 @@ C3L-04265.WXS.Nbc C3L-04265 AML WXS buccal_normal CPT0231080001 CPT0231080001.Wh C3L-04265.WXS.Nbc.hg38 C3L-04265 AML WXS buccal_normal CPT0231080001 f5de7dc4-bb2a-4889-9d44-b2061d736bfa_wxs_gdc_realn.bam 46731678277 BAM harmonized CPTAC3 6d54295f-abfd-4903-b7da-a345847aba8c 32c70ab4f5ff86ad444d5f9487155968 { 'aliquot_tag': 'ALQ_59be004b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04265.WXS.Tbm C3L-04265 AML WXS tumor_bone_marrow CPT0230980002 CPT0230980002.WholeExome.RP-1303.bam 21431856866 BAM aligned CPTAC3 e16d072d-6bdd-4c3e-a81e-f3d1dac38e17 3644fc2f12d0047ad9ac91a07ea5e65e { 'aliquot_tag': 'ALQ_41cf0b8d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04265.WXS.Tbm.hg38 C3L-04265 AML WXS tumor_bone_marrow CPT0230980002 3ea9c4aa-eba1-4958-a2c1-04867a968f63_wxs_gdc_realn.bam 29828921940 BAM harmonized CPTAC3 80c95db4-ec3f-4be0-b4ae-217eeee992c5 ee0bbe4edc54b2d4cbf14ddfd2e1aca2 { 'aliquot_tag': 'ALQ_41cf0b8d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04269.MethArray.Green.Tpb C3L-04269 AML Methylation Array tumor_peripheral_blood CPT0410160002 205987780101_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 55b6c9a6-016c-4532-8d80-a7981d5f5dd6 41f2993ea6823e6ac05c30c9d2f0a6a2 { 'aliquot_tag': 'ALQ_23934976', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04269.MethArray.Red.Tpb C3L-04269 AML Methylation Array tumor_peripheral_blood CPT0410160002 205987780101_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 caad17c1-9a7b-4429-960c-599c4897de9d 52e1a8f3a7cd9b5154ce9fda974fb207 { 'aliquot_tag': 'ALQ_23934976', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04269.miRNA-Seq.Tpb C3L-04269 AML miRNA-Seq tumor_peripheral_blood CPT0410170002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCAACA_S8_L003_R1_001.unaln.bam 283806388 BAM unaligned CPTAC3 084b6930-ac45-47ed-92c6-cbb9d86235d8 c72df745a4db24bba8f5c8c90872fafe { 'aliquot_tag': 'ALQ_1ef360c6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-04269.RNA-Seq.R1_L008.Tpb C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 211207_UNC32-K00270_0306_BHMW5YBBXY_TGGTGGCA-TCCTGTAA_S32_L008_R1_001.fastq.gz 3791093449 FASTQ R1_L008 unaligned CPTAC3 d548139e-dcbb-4064-a6e5-47466195bc6b 73646eed446b369344bf6f9f6080a799 { 'aliquot_tag': 'ALQ_1ef360c6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-04269.RNA-Seq.R2_L008.Tpb C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 211207_UNC32-K00270_0306_BHMW5YBBXY_TGGTGGCA-TCCTGTAA_S32_L008_R2_001.fastq.gz 4294650540 FASTQ R2_L008 unaligned CPTAC3 9405337a-8f55-4d24-8926-d7fcb09c492b eb6c33776603b1a1fe8b5128e83b9596 { 'aliquot_tag': 'ALQ_1ef360c6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04269.miRNA-Seq.Tpb.hg38 C3L-04269 AML miRNA-Seq tumor_peripheral_blood CPT0410170002 fce961e4-2acc-42b4-8346-b9bde2d6919a_mirnaseq_gdc_realn.bam 314868999 BAM harmonized CPTAC3 8d4e8a1b-e79c-4e73-b824-f3b39eac6929 f7ecc4a8bfb7cb193937723bbcc3c20e { 'aliquot_tag': 'ALQ_1ef360c6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04269.RNA-Seq.chimeric.Tpb.hg38 C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 32912349-2252-4c4e-bd48-6f93e9dd91af.rna_seq.chimeric.gdc_realn.bam 652421558 BAM chimeric harmonized CPTAC3 05a79073-f918-4edd-ad78-8e60f24015ca 54f7847a3b81be65d9827a857865c14e { 'aliquot_tag': 'ALQ_1ef360c6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04269.RNA-Seq.genomic.Tpb.hg38 C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 32912349-2252-4c4e-bd48-6f93e9dd91af.rna_seq.genomic.gdc_realn.bam 8067191807 BAM genomic harmonized CPTAC3 c208f3c1-07a2-4c33-bef3-1d785b254c29 cfad4033e0c32e4d3c1c4e6e021d6acf { 'aliquot_tag': 'ALQ_1ef360c6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04269.RNA-Seq.R1_L008.Tpb C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 211207_UNC32-K00270_0306_BHMW5YBBXY_TGGTGGCA-TCCTGTAA_S32_L008_R1_001.fastq.gz 3791093449 FASTQ R1_L008 unaligned CPTAC3 d548139e-dcbb-4064-a6e5-47466195bc6b 73646eed446b369344bf6f9f6080a799 { 'aliquot_tag': 'ALQ_1ef360c6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L008' } +C3L-04269.RNA-Seq.R2_L008.Tpb C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 211207_UNC32-K00270_0306_BHMW5YBBXY_TGGTGGCA-TCCTGTAA_S32_L008_R2_001.fastq.gz 4294650540 FASTQ R2_L008 unaligned CPTAC3 9405337a-8f55-4d24-8926-d7fcb09c492b eb6c33776603b1a1fe8b5128e83b9596 { 'aliquot_tag': 'ALQ_1ef360c6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L008' } +C3L-04269.RNA-Seq.transcriptome.Tpb.hg38 C3L-04269 AML RNA-Seq tumor_peripheral_blood CPT0410170002 32912349-2252-4c4e-bd48-6f93e9dd91af.rna_seq.transcriptome.gdc_realn.bam 8320905355 BAM transcriptome harmonized CPTAC3 65c880d2-e0e0-46f0-a212-8b118bed066e 4e330b0c451cd4f8306f612ab6729dc5 { 'aliquot_tag': 'ALQ_1ef360c6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04269.WGS.Tpb C3L-04269 AML WGS tumor_peripheral_blood CPT0410160002 CPT0410160002.WholeGenome.RP-2158.bam 52289007257 BAM aligned CPTAC3 c206d65e-f256-471f-a5ec-a49f76d4bd5f 2c22e58d81445b1cc22de6df7d40e35c { 'aliquot_tag': 'ALQ_23934976', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04269.WGS.Tpb.hg38 C3L-04269 AML WGS tumor_peripheral_blood CPT0410160002 5429cc08-8a1f-4a73-906e-f4946bddf5ac_wgs_gdc_realn.bam 153654322913 BAM harmonized CPTAC3 91ab2d1f-bde2-467f-946e-046e2beaf400 d933e50ad1b9652b8d5fd053b2437b1f { 'aliquot_tag': 'ALQ_23934976', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04269.WXS.Nbc C3L-04269 AML WXS buccal_normal CPT0410130001 CPT0410130001.WholeExome.RP-1303.bam 23690432559 BAM aligned CPTAC3 477a261a-0032-4370-980e-9a7f7521d2b9 9fb5f25f3b194bfea0d52f0a5a4ace23 { 'aliquot_tag': 'ALQ_727a97bc', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04269.WXS.Nbc.hg38 C3L-04269 AML WXS buccal_normal CPT0410130001 4f69dcfa-a3db-4857-953a-5f94514efa44_wxs_gdc_realn.bam 32385634097 BAM harmonized CPTAC3 211bca65-45bb-4347-8146-b83f2c4e2222 6e7cd7a7df45e8a4e63b7020f4973a2e { 'aliquot_tag': 'ALQ_727a97bc', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04269.WXS.Tpb C3L-04269 AML WXS tumor_peripheral_blood CPT0410160002 CPT0410160002.WholeExome.RP-1303.bam 26085113690 BAM aligned CPTAC3 3520a5c1-99c5-4ee0-9daf-4105e9f6b91a 50676822f5ec75eb4f1e7bb1b41423d4 { 'aliquot_tag': 'ALQ_23934976', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04269.WXS.Tpb.hg38 C3L-04269 AML WXS tumor_peripheral_blood CPT0410160002 5429cc08-8a1f-4a73-906e-f4946bddf5ac_wxs_gdc_realn.bam 36054933398 BAM harmonized CPTAC3 d62e5a8b-3ed8-4ce2-a033-ab59310ca232 5f40d7d21b1ac76e205c7b243cf99228 { 'aliquot_tag': 'ALQ_23934976', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04270.MethArray.Green.Tbm C3L-04270 AML Methylation Array tumor_bone_marrow CPT0280070002 205555390157_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 c79bb87d-10cd-4263-bcbe-c3dd46912b9c 51179644a08835eb64d770e57824ff5d { 'aliquot_tag': 'ALQ_b9fad1c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04270.MethArray.Red.Tbm C3L-04270 AML Methylation Array tumor_bone_marrow CPT0280070002 205555390157_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 2131c4cf-9bb7-4e50-9ff4-c55a3d20a584 b12bf643109a82ec24f0423628ae23e2 { 'aliquot_tag': 'ALQ_b9fad1c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04270.miRNA-Seq.Tbm C3L-04270 AML miRNA-Seq tumor_bone_marrow CPT0280080001 210702_UNC32-K00270_0289_AHKJ22BBXY_TAGCTT_S19_L001_R1_001.unaln.bam 342712818 BAM unaligned CPTAC3 be69c497-c480-4ffe-ae3b-91417ef83ded ca8bef515c42ddeb266beae32f325a4d { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04270.RNA-Seq.chimeric.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 b6da2861-3beb-4e7c-a1f2-9ff7859944c9.rna_seq.chimeric.gdc_realn.bam 122778665 BAM chimeric harmonized CPTAC3 6608c43b-c45a-4405-8cc6-9c17d1785785 2d7514482fb5983e6222b1133c691ccf { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04270.RNA-Seq.genomic.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 b6da2861-3beb-4e7c-a1f2-9ff7859944c9.rna_seq.genomic.gdc_realn.bam 8005596495 BAM genomic harmonized CPTAC3 fca51570-39d7-44cc-a0b6-a4410ae1e12f 4aa5528902bd778774fdf5a6dc61c333 { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04270.RNA-Seq.R1_L006.Tbm C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 210319_UNC31-K00269_0296_AHKT37BBXY_CATAATAC-TTCTAACG_S22_L006_R1_001.fastq.gz 4138037151 FASTQ R1_L006 unaligned CPTAC3 8a3129ee-c1c8-4a42-a263-74e98cb4a75b a648b76c0cc62ea0807da93a039bfc14 { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04270.RNA-Seq.R2_L006.Tbm C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 210319_UNC31-K00269_0296_AHKT37BBXY_CATAATAC-TTCTAACG_S22_L006_R2_001.fastq.gz 4280223869 FASTQ R2_L006 unaligned CPTAC3 3475f320-39a9-4913-a496-0bf21360a545 e76d769efb4714aa1504753ee8422775 { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04270.RNA-Seq.transcriptome.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 b6da2861-3beb-4e7c-a1f2-9ff7859944c9.rna_seq.transcriptome.gdc_realn.bam 8231192915 BAM transcriptome harmonized CPTAC3 9847d71f-520f-42ca-b26e-27957034fbef dec066ec64e63c33fba81a3c3a751c1b { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04270.miRNA-Seq.Tbm.hg38 C3L-04270 AML miRNA-Seq tumor_bone_marrow CPT0280080001 320b7272-d132-414e-a9ed-6ffdb0135524_mirnaseq_gdc_realn.bam 381028035 BAM harmonized CPTAC3 ccef8668-ddc3-4e65-8090-596860f8b657 97ad581265cf289a51628a79836ed2e2 { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04270.RNA-Seq.chimeric.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 460135d6-9ebb-436e-a8b3-4e0d9914fefe.rna_seq.chimeric.gdc_realn.bam 122777876 BAM chimeric harmonized CPTAC3 90110308-309a-407b-ae9e-a3a29d495fba cdff05fd21a21cb9deb7e2921816043b { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04270.RNA-Seq.genomic.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 460135d6-9ebb-436e-a8b3-4e0d9914fefe.rna_seq.genomic.gdc_realn.bam 8015174223 BAM genomic harmonized CPTAC3 ddb8174d-4adf-4dbd-8faa-d2fce82e0a68 162e82396a9cbcc55266541f4b0ee5ad { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04270.RNA-Seq.R1_L006.Tbm C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 210319_UNC31-K00269_0296_AHKT37BBXY_CATAATAC-TTCTAACG_S22_L006_R1_001.fastq.gz 4138037151 FASTQ R1_L006 unaligned CPTAC3 8a3129ee-c1c8-4a42-a263-74e98cb4a75b a648b76c0cc62ea0807da93a039bfc14 { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-04270.RNA-Seq.R2_L006.Tbm C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 210319_UNC31-K00269_0296_AHKT37BBXY_CATAATAC-TTCTAACG_S22_L006_R2_001.fastq.gz 4280223869 FASTQ R2_L006 unaligned CPTAC3 3475f320-39a9-4913-a496-0bf21360a545 e76d769efb4714aa1504753ee8422775 { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-04270.RNA-Seq.transcriptome.Tbm.hg38 C3L-04270 AML RNA-Seq tumor_bone_marrow CPT0280080001 460135d6-9ebb-436e-a8b3-4e0d9914fefe.rna_seq.transcriptome.gdc_realn.bam 9353933846 BAM transcriptome harmonized CPTAC3 d0ffaec8-ac93-4485-8dd4-eefcabcd7dff dd6f83f3476ac7a9f92c52f65fda8a71 { 'aliquot_tag': 'ALQ_a2a317a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04270.WGS.Nbc C3L-04270 AML WGS buccal_normal CPT0280050001 CPT0280050001.WholeGenome.RP-2158.bam 53997676579 BAM aligned CPTAC3 584533ee-c9ac-4508-ba42-e3641671903d 416579009f84791da067f8a73eeec2dc { 'aliquot_tag': 'ALQ_5a33d318', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04270.WGS.Nbc.hg38 C3L-04270 AML WGS buccal_normal CPT0280050001 f926fa1d-c219-4251-8730-4a47e3087049_wgs_gdc_realn.bam 169120568393 BAM harmonized CPTAC3 75406c0c-b54e-40da-8d71-7aebffc242d0 856f71dd38cdbddddca1ba4767db4652 { 'aliquot_tag': 'ALQ_5a33d318', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04270.WGS.Tbm C3L-04270 AML WGS tumor_bone_marrow CPT0280070002 CPT0280070002.WholeGenome.RP-2158.bam 43565696594 BAM aligned CPTAC3 c15b0c27-aa8d-4080-8a60-6c8dd5332a22 586e1d53f4c906d14b082abfc5d556da { 'aliquot_tag': 'ALQ_b9fad1c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04270.WGS.Tbm.hg38 C3L-04270 AML WGS tumor_bone_marrow CPT0280070002 68fa8f68-dd60-4029-af3d-7e15bc44afff_wgs_gdc_realn.bam 128554904097 BAM harmonized CPTAC3 a382bf00-ff44-4937-98ed-fc56b0596db2 4634f79d245e41da2592b9a69b141df2 { 'aliquot_tag': 'ALQ_b9fad1c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04270.WXS.Nbc C3L-04270 AML WXS buccal_normal CPT0280050001 CPT0280050001.WholeExome.RP-1303.bam 24254314387 BAM aligned CPTAC3 9d05ed59-c2bc-4a16-98e9-3b4dcf49eaef 900cd72e9f0e19c8d3441f1974232c83 { 'aliquot_tag': 'ALQ_5a33d318', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04270.WXS.Nbc.hg38 C3L-04270 AML WXS buccal_normal CPT0280050001 f926fa1d-c219-4251-8730-4a47e3087049_wxs_gdc_realn.bam 33432029614 BAM harmonized CPTAC3 b6bbc306-2ab1-45d3-9d04-6aca54c65c17 50a2da4765827ed63c8c411bf38b2be0 { 'aliquot_tag': 'ALQ_5a33d318', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04270.WXS.Tbm C3L-04270 AML WXS tumor_bone_marrow CPT0280070002 CPT0280070002.WholeExome.RP-1303.bam 21736140676 BAM aligned CPTAC3 778d053c-1d97-4b94-82a5-14abc9ac93e6 8fc5e43233c4fc7240969dc4e576da84 { 'aliquot_tag': 'ALQ_b9fad1c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04270.WXS.Tbm.hg38 C3L-04270 AML WXS tumor_bone_marrow CPT0280070002 68fa8f68-dd60-4029-af3d-7e15bc44afff_wxs_gdc_realn.bam 29926952849 BAM harmonized CPTAC3 9373160f-3fdc-4920-8d50-c2ff94a07743 c247b13c7d53eedb4da392bed9fedb01 { 'aliquot_tag': 'ALQ_b9fad1c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04336.MethArray.Green.A C3L-04336 LSCC Methylation Array tissue_normal CPT0256900006 204372030139_R08C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e5a30652-4ae5-4f37-b136-5861117ba429 f3dc687d652f7979064e2a11dbe626ce { 'aliquot_tag': 'ALQ_d36db8e8', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04336.MethArray.Green.T C3L-04336 LSCC Methylation Array tumor CPT0256850006 204372030087_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 33b632d9-99ed-4e15-8709-9b7c0503cc47 7218dc45e4cbfefcb82c755e1e95a880 { 'aliquot_tag': 'ALQ_d0d1e43d', 'gdc_sample_type': 'Primary Tumor' } C3L-04336.MethArray.Red.A C3L-04336 LSCC Methylation Array tissue_normal CPT0256900006 204372030139_R08C01_Red.idat 13677880 IDAT Red NA CPTAC3 83d66753-5de6-49f6-be0f-917e0870fd75 342c9a485ffd7ea9f15c6b37d0adf736 { 'aliquot_tag': 'ALQ_d36db8e8', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -15102,16 +16036,16 @@ C3L-04336.miRNA-Seq.A C3L-04336 LSCC miRNA-Seq tissue_normal CPT0256900009 20051 C3L-04336.miRNA-Seq.A.hg38 C3L-04336 LSCC miRNA-Seq tissue_normal CPT0256900009 7763789d-e974-4cec-890f-c4a8344986e2_mirnaseq_gdc_realn.bam 269068843 BAM harmonized CPTAC3 d4475d97-3a18-426a-ac3d-5caa6d5581aa 274802b4d66a7b3f70e67a0438d316b5 { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04336.miRNA-Seq.T C3L-04336 LSCC miRNA-Seq tumor CPT0256850009 200224_UNC31-K00269_0267_AHC722BBXY_ACTTGA_S8_L006_R1_001.unaln.bam 247377140 BAM unaligned CPTAC3 db3c9223-1cf8-48c4-a112-73b4398856bb 4c87083a0d547701871277bdf70c957e { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor' } C3L-04336.miRNA-Seq.T.hg38 C3L-04336 LSCC miRNA-Seq tumor CPT0256850009 0e194943-07db-4824-b62f-1d480f2c17ac_mirnaseq_gdc_realn.bam 278844565 BAM harmonized CPTAC3 2f722b20-f229-4687-a80a-24013791a7de 675b92a4f569fdca61c132e0acae5222 { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-04336.RNA-Seq.chimeric.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 47f1353c-5ca9-43f7-934b-e003927ce054.rna_seq.chimeric.gdc_realn.bam 78790543 BAM chimeric harmonized CPTAC3 4a048760-e3bf-4028-87d6-9ce24b1e5cb3 f12951c2802635a8f31d31d247832999 { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04336.RNA-Seq.chimeric.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 7915b9ae-3a98-4993-b5ea-b8aa63962493.rna_seq.chimeric.gdc_realn.bam 57522984 BAM chimeric harmonized CPTAC3 cdf8a24f-1a83-4ada-8c1a-fd00a2392423 f41f5219dab99bff6f8406662da75595 { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-04336.RNA-Seq.genomic.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 47f1353c-5ca9-43f7-934b-e003927ce054.rna_seq.genomic.gdc_realn.bam 10033369503 BAM genomic harmonized CPTAC3 97b6c784-0308-48b3-996c-006b313f22f7 1448551740a61d2a67677c9ed61f4f23 { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04336.RNA-Seq.genomic.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 7915b9ae-3a98-4993-b5ea-b8aa63962493.rna_seq.genomic.gdc_realn.bam 9958174578 BAM genomic harmonized CPTAC3 615ca754-0694-4207-a337-f25e7ea072fd 08a4fe277f4ee8e82315c171a509282a { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-04336.RNA-Seq.R1_L002.A C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 200505_UNC31-K00269_0277_AHGFKNBBXY_GAATGAGA-GAGGCATT_S7_L002_R1_001.fastq.gz 4978141232 FASTQ R1_L002 unaligned CPTAC3 1d5e8d44-c758-4c01-856f-923ce90088d9 70fa0b56f324ee773a988e32817bfa96 { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04336.RNA-Seq.R1_L006.T C3L-04336 LSCC RNA-Seq tumor CPT0256850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GAATGAGA-GAGGCATT_S24_L006_R1_001.fastq.gz 4978146204 FASTQ R1_L006 unaligned CPTAC3 1956c0ac-22a8-4eaf-b902-60f761cffb68 23e35a17c316aafcd001762a4dfbfa1c { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-04336.RNA-Seq.R2_L002.A C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 200505_UNC31-K00269_0277_AHGFKNBBXY_GAATGAGA-GAGGCATT_S7_L002_R2_001.fastq.gz 5495426971 FASTQ R2_L002 unaligned CPTAC3 bde959a3-48f7-439a-b1ea-2b56936ee3d2 6ca4f07b564944132b9ba88db5f9d5d3 { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04336.RNA-Seq.R2_L006.T C3L-04336 LSCC RNA-Seq tumor CPT0256850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GAATGAGA-GAGGCATT_S24_L006_R2_001.fastq.gz 5212057900 FASTQ R2_L006 unaligned CPTAC3 a9ca1e0c-0d79-4d8a-bc85-fc1efec794d2 6cc1d452194a86574a18815089a75a5a { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor' } -C3L-04336.RNA-Seq.transcriptome.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 47f1353c-5ca9-43f7-934b-e003927ce054.rna_seq.transcriptome.gdc_realn.bam 10450240309 BAM transcriptome harmonized CPTAC3 5149c325-fe40-422a-acb1-96699b84481c ca774dfd8e196801f57cc41ebddad34f { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04336.RNA-Seq.transcriptome.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 7915b9ae-3a98-4993-b5ea-b8aa63962493.rna_seq.transcriptome.gdc_realn.bam 11545052146 BAM transcriptome harmonized CPTAC3 94504719-6ecd-4596-a5f1-d11f4719fcc3 4b94c46f665dfbe98639a410090d292e { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor' } +C3L-04336.RNA-Seq.chimeric.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 c8918223-be8e-4375-b2a0-dfde12c3f933.rna_seq.chimeric.gdc_realn.bam 78753684 BAM chimeric harmonized CPTAC3 70cf2f19-6d78-46b5-93a5-7e4f0ffde867 838f2371d00ae19fe5bb76f8bbaf3700 { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04336.RNA-Seq.chimeric.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 ae1f1be1-52f0-4b76-9235-7bc90ab5c7a1.rna_seq.chimeric.gdc_realn.bam 57525179 BAM chimeric harmonized CPTAC3 3530bc7b-55c9-4e98-9204-32cef155f83e f4c1acf97f48f0ff8f85170441a7752b { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor' } +C3L-04336.RNA-Seq.genomic.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 c8918223-be8e-4375-b2a0-dfde12c3f933.rna_seq.genomic.gdc_realn.bam 10035592744 BAM genomic harmonized CPTAC3 95235af6-5626-4af9-b8bb-9188c7513bdb e591874883e230127798b33579816270 { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04336.RNA-Seq.genomic.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 ae1f1be1-52f0-4b76-9235-7bc90ab5c7a1.rna_seq.genomic.gdc_realn.bam 9960373804 BAM genomic harmonized CPTAC3 37b617c5-8b05-4d4a-b086-b285b157c848 754a5881a9b30e2c06a5a7a37493fa9d { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor' } +C3L-04336.RNA-Seq.R1_L002.A C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 200505_UNC31-K00269_0277_AHGFKNBBXY_GAATGAGA-GAGGCATT_S7_L002_R1_001.fastq.gz 4978141232 FASTQ R1_L002 unaligned CPTAC3 1d5e8d44-c758-4c01-856f-923ce90088d9 70fa0b56f324ee773a988e32817bfa96 { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-04336.RNA-Seq.R1_L006.T C3L-04336 LSCC RNA-Seq tumor CPT0256850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GAATGAGA-GAGGCATT_S24_L006_R1_001.fastq.gz 4978146204 FASTQ R1_L006 unaligned CPTAC3 1956c0ac-22a8-4eaf-b902-60f761cffb68 23e35a17c316aafcd001762a4dfbfa1c { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-04336.RNA-Seq.R2_L002.A C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 200505_UNC31-K00269_0277_AHGFKNBBXY_GAATGAGA-GAGGCATT_S7_L002_R2_001.fastq.gz 5495426971 FASTQ R2_L002 unaligned CPTAC3 bde959a3-48f7-439a-b1ea-2b56936ee3d2 6ca4f07b564944132b9ba88db5f9d5d3 { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-04336.RNA-Seq.R2_L006.T C3L-04336 LSCC RNA-Seq tumor CPT0256850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GAATGAGA-GAGGCATT_S24_L006_R2_001.fastq.gz 5212057900 FASTQ R2_L006 unaligned CPTAC3 a9ca1e0c-0d79-4d8a-bc85-fc1efec794d2 6cc1d452194a86574a18815089a75a5a { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-04336.RNA-Seq.transcriptome.A.hg38 C3L-04336 LSCC RNA-Seq tissue_normal CPT0256900009 c8918223-be8e-4375-b2a0-dfde12c3f933.rna_seq.transcriptome.gdc_realn.bam 11961274851 BAM transcriptome harmonized CPTAC3 cbd93b64-cf8a-4b4d-9e43-27fb019888ba b1b895371306bc31ac83c76451ab198f { 'aliquot_tag': 'ALQ_43d2a579', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04336.RNA-Seq.transcriptome.T.hg38 C3L-04336 LSCC RNA-Seq tumor CPT0256850009 ae1f1be1-52f0-4b76-9235-7bc90ab5c7a1.rna_seq.transcriptome.gdc_realn.bam 13120410788 BAM transcriptome harmonized CPTAC3 feaa0b0c-f292-4bc4-88b0-a6698013c8ad ac36351d53a56d124c663e9d1e22e89c { 'aliquot_tag': 'ALQ_406ef9ac', 'gdc_sample_type': 'Primary Tumor' } C3L-04336.WGS.N C3L-04336 LSCC WGS blood_normal CPT0257000002 CPT0257000002.WholeGenome.RP-2158.bam 28382645326 BAM aligned CPTAC3 2ecd0917-d886-4c27-bdf6-120e30b0547a 1779317918fef5d7de564f3e6ac239a1 { 'aliquot_tag': 'ALQ_5578268d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04336.WGS.N.hg38 C3L-04336 LSCC WGS blood_normal CPT0257000002 4878f4fb-bb0d-4f9c-87d6-d6959c0ea731_wgs_gdc_realn.bam 84241551453 BAM harmonized CPTAC3 aa673546-1c0d-4508-9ab6-dad3e4b748ae 516cf87116a439381c4bebdb45fbb1ae { 'aliquot_tag': 'ALQ_5578268d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04336.WGS.T C3L-04336 LSCC WGS tumor CPT0256850006 CPT0256850006.WholeGenome.RP-2158.bam 23904262100 BAM aligned CPTAC3 5c700df8-9626-4edc-91bf-2d4bb64e7e01 a7bbfed150c4fe35569c271aed2452a3 { 'aliquot_tag': 'ALQ_d0d1e43d', 'gdc_sample_type': 'Primary Tumor' } @@ -15126,11 +16060,11 @@ C3L-04339.MethArray.Green.T C3L-04339 GBM Methylation Array tumor CPT0258090006 C3L-04339.MethArray.Red.T C3L-04339 GBM Methylation Array tumor CPT0258090006 204372030024_R05C01_Red.idat 13677905 IDAT Red NA CPTAC3 3731cfc1-aeba-4f8d-b51b-acebe911b3cb 92c0ba0cbd2729a623d194e3e7d8c16a { 'aliquot_tag': 'ALQ_a94df00c', 'gdc_sample_type': 'Primary Tumor' } C3L-04339.miRNA-Seq.T C3L-04339 GBM miRNA-Seq tumor CPT0258090008 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L001_R1_001.unaln.bam 381401337 BAM unaligned CPTAC3 7ba9728a-8370-4ec2-9202-b4fc621b0e15 2d5ac790dc0407adf0033291cae84f23 { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor' } C3L-04339.miRNA-Seq.T.hg38 C3L-04339 GBM miRNA-Seq tumor CPT0258090008 a135d303-2474-48c4-bff0-0f7b8c8021b6_mirnaseq_gdc_realn.bam 427460534 BAM harmonized CPTAC3 d62b8902-1cb3-446d-afbf-293f4c5acbce 5066381eba57ffcb4a86ad777630ad3f { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-04339.RNA-Seq.chimeric.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 8d54b4ab-a634-4b91-8c04-164d468bbd17.rna_seq.chimeric.gdc_realn.bam 23680849 BAM chimeric harmonized CPTAC3 81ac85a2-513d-403f-b34b-7d9687ffb5c8 d5ec42555147d804ee284975b2fddfa9 { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-04339.RNA-Seq.genomic.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 8d54b4ab-a634-4b91-8c04-164d468bbd17.rna_seq.genomic.gdc_realn.bam 5986583068 BAM genomic harmonized CPTAC3 a12c26c0-0b3e-4acd-849b-77b4e56b7ace aaf5a6bbd108d8af3df8cee083b9b1f3 { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-04339.RNA-Seq.R1_L004.T C3L-04339 GBM RNA-Seq tumor CPT0258090008 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R1_001.fastq.gz 2500941440 FASTQ R1_L004 unaligned CPTAC3 c6a9244a-4ab2-4f78-be63-b74401e4b903 66a2a3ac3cec1d5cf11e3c01f94ec89f { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-04339.RNA-Seq.R2_L004.T C3L-04339 GBM RNA-Seq tumor CPT0258090008 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R2_001.fastq.gz 2964399534 FASTQ R2_L004 unaligned CPTAC3 1ad6b56f-857b-4e87-ba96-77141a60b898 5d6636c43070a2cacdb4285e10f1ed91 { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-04339.RNA-Seq.transcriptome.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 8d54b4ab-a634-4b91-8c04-164d468bbd17.rna_seq.transcriptome.gdc_realn.bam 6837239746 BAM transcriptome harmonized CPTAC3 d94a5552-519b-4195-93e6-cdc67e6ef73c 3eab35117619313c0b85fd4157cd89cf { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor' } +C3L-04339.RNA-Seq.chimeric.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 41685739-a882-4a17-8ee5-71c1595bf9f3.rna_seq.chimeric.gdc_realn.bam 23661139 BAM chimeric harmonized CPTAC3 88dceb91-b202-4f33-b2b7-d9b37241e636 a74276df3be49468dfd2777f91f71e90 { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor' } +C3L-04339.RNA-Seq.genomic.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 41685739-a882-4a17-8ee5-71c1595bf9f3.rna_seq.genomic.gdc_realn.bam 5987088707 BAM genomic harmonized CPTAC3 6dbbf2ac-c081-4485-aa3d-f09702f1f19f ddfb6fe472c3abd412b264b4027ec6cb { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor' } +C3L-04339.RNA-Seq.R1_L004.T C3L-04339 GBM RNA-Seq tumor CPT0258090008 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R1_001.fastq.gz 2500941440 FASTQ R1_L004 unaligned CPTAC3 c6a9244a-4ab2-4f78-be63-b74401e4b903 66a2a3ac3cec1d5cf11e3c01f94ec89f { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04339.RNA-Seq.R2_L004.T C3L-04339 GBM RNA-Seq tumor CPT0258090008 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R2_001.fastq.gz 2964399534 FASTQ R2_L004 unaligned CPTAC3 1ad6b56f-857b-4e87-ba96-77141a60b898 5d6636c43070a2cacdb4285e10f1ed91 { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-04339.RNA-Seq.transcriptome.T.hg38 C3L-04339 GBM RNA-Seq tumor CPT0258090008 41685739-a882-4a17-8ee5-71c1595bf9f3.rna_seq.transcriptome.gdc_realn.bam 7799753332 BAM transcriptome harmonized CPTAC3 19b1420f-8242-472c-95fb-e6e4db6e6a73 339f8c9e1ea1e036e2b4da1ac35528a0 { 'aliquot_tag': 'ALQ_4ef5dd0b', 'gdc_sample_type': 'Primary Tumor' } C3L-04339.WGS.N C3L-04339 GBM WGS blood_normal CPT0258190002 CPT0258190002.WholeGenome.RP-2158.bam 25848841555 BAM aligned CPTAC3 1afa5fa1-59fe-4184-8c5e-e6d57323443d 38ba15e16722fdec5cae606b5533a243 { 'aliquot_tag': 'ALQ_657ce7b0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04339.WGS.N.hg38 C3L-04339 GBM WGS blood_normal CPT0258190002 33f46088-32c6-48b4-8a6b-2290453f2095_wgs_gdc_realn.bam 76854036007 BAM harmonized CPTAC3 a78992b6-5d44-4e49-ba64-f99c06d9700e 898dc9eba69c7828d56ea0a380681697 { 'aliquot_tag': 'ALQ_657ce7b0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04339.WGS.T C3L-04339 GBM WGS tumor CPT0258090006 CPT0258090006.WholeGenome.RP-2158.bam 27146278918 BAM aligned CPTAC3 48351d83-cc2f-4826-8731-0830df0aa09c ee2ec8e19fa8e277b6ece8d424b9d350 { 'aliquot_tag': 'ALQ_a94df00c', 'gdc_sample_type': 'Primary Tumor' } @@ -15151,10 +16085,10 @@ C3L-04354.RNA-Seq.chimeric.A.hg38 C3L-04354 HNSCC RNA-Seq tissue_normal CPT02431 C3L-04354.RNA-Seq.chimeric.T.hg38 C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 574a3bd8-a791-4658-9193-39de5a2eb77c.rna_seq.chimeric.gdc_realn.bam 250309929 BAM chimeric harmonized CPTAC3 aa693b68-0ae3-4b7d-b704-5d0346b60e80 a493ccce9429db024b27f57f63e689eb { 'aliquot_tag': 'ALQ_f75fb9f9', 'gdc_sample_type': 'Primary Tumor' } C3L-04354.RNA-Seq.genomic.A.hg38 C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 4ab84dfe-3229-4198-b203-af14d6724f6b.rna_seq.genomic.gdc_realn.bam 7988415034 BAM genomic harmonized CPTAC3 ed21d1fd-e034-4188-a834-8f00c23bb12b 9c4ec8741e7099de64c3e1216c503f35 { 'aliquot_tag': 'ALQ_232b83ea', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04354.RNA-Seq.genomic.T.hg38 C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 574a3bd8-a791-4658-9193-39de5a2eb77c.rna_seq.genomic.gdc_realn.bam 9068611099 BAM genomic harmonized CPTAC3 a3b0430d-6d17-4ffb-ad75-af605754314d 26ca893764b20a4d8fcec34da6bf3b6a { 'aliquot_tag': 'ALQ_f75fb9f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-04354.RNA-Seq.R1_L001.T C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4410111059 FASTQ R1_L001 unaligned CPTAC3 509c74b9-0387-4e6e-9a34-df82a0e21c15 12139510fc810c5dcc0e8d660320dbc7 { 'aliquot_tag': 'ALQ_f75fb9f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-04354.RNA-Seq.R1_L004.A C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R1_001.fastq.gz 3584955086 FASTQ R1_L004 unaligned CPTAC3 e239027f-e025-487d-abcc-ff9de8e34f80 60681ed8f40f10e8e3a6f176e05fa40b { 'aliquot_tag': 'ALQ_232b83ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04354.RNA-Seq.R2_L001.T C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4794346110 FASTQ R2_L001 unaligned CPTAC3 2d2bdec4-4dc8-4305-bca9-d20ad509cfbb c907ce05d3f15d44b9871d2946fae84e { 'aliquot_tag': 'ALQ_f75fb9f9', 'gdc_sample_type': 'Primary Tumor' } -C3L-04354.RNA-Seq.R2_L004.A C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R2_001.fastq.gz 4145360974 FASTQ R2_L004 unaligned CPTAC3 3268285d-843c-4702-ae5a-80b8964dda0c 4e96b76c7f6398cfa221a6e1c8cfd82b { 'aliquot_tag': 'ALQ_232b83ea', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04354.RNA-Seq.R1_L001.T C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4410111059 FASTQ R1_L001 unaligned CPTAC3 509c74b9-0387-4e6e-9a34-df82a0e21c15 12139510fc810c5dcc0e8d660320dbc7 { 'aliquot_tag': 'ALQ_f75fb9f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04354.RNA-Seq.R1_L004.A C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R1_001.fastq.gz 3584955086 FASTQ R1_L004 unaligned CPTAC3 e239027f-e025-487d-abcc-ff9de8e34f80 60681ed8f40f10e8e3a6f176e05fa40b { 'aliquot_tag': 'ALQ_232b83ea', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-04354.RNA-Seq.R2_L001.T C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 190411_UNC31-K00269_0208_BH3W3KBBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4794346110 FASTQ R2_L001 unaligned CPTAC3 2d2bdec4-4dc8-4305-bca9-d20ad509cfbb c907ce05d3f15d44b9871d2946fae84e { 'aliquot_tag': 'ALQ_f75fb9f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04354.RNA-Seq.R2_L004.A C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 190416_UNC32-K00270_0165_AH5JY2BBXY_CGGACAAC-TCCGGATT_S16_L004_R2_001.fastq.gz 4145360974 FASTQ R2_L004 unaligned CPTAC3 3268285d-843c-4702-ae5a-80b8964dda0c 4e96b76c7f6398cfa221a6e1c8cfd82b { 'aliquot_tag': 'ALQ_232b83ea', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-04354.RNA-Seq.transcriptome.A.hg38 C3L-04354 HNSCC RNA-Seq tissue_normal CPT0243140007 4ab84dfe-3229-4198-b203-af14d6724f6b.rna_seq.transcriptome.gdc_realn.bam 10682719052 BAM transcriptome harmonized CPTAC3 d1c1847f-b2cc-4a35-ade2-0d3fd90b37b7 908880258f5542a849f27a0517fb6049 { 'aliquot_tag': 'ALQ_232b83ea', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04354.RNA-Seq.transcriptome.T.hg38 C3L-04354 HNSCC RNA-Seq tumor CPT0243090009 574a3bd8-a791-4658-9193-39de5a2eb77c.rna_seq.transcriptome.gdc_realn.bam 11087872998 BAM transcriptome harmonized CPTAC3 973485ca-c324-4033-bed0-0d32c528c3d2 f1aa8f8a222bbb7cf40445bac22b12b9 { 'aliquot_tag': 'ALQ_f75fb9f9', 'gdc_sample_type': 'Primary Tumor' } C3L-04354.WGS.N C3L-04354 HNSCC WGS blood_normal CPT0243240002 CPT0243240002.WholeGenome.RP-1303.bam 70599957432 BAM aligned CPTAC3 3507aa10-8711-4961-bcb4-dc51bcf523c9 d8fb4f1513a926ecaf68024e7e31bb16 { 'aliquot_tag': 'ALQ_d5d505cb', 'gdc_sample_type': 'Blood Derived Normal' } @@ -15171,11 +16105,11 @@ C3L-04359.MethArray.Green.T C3L-04359 GBM Methylation Array tumor CPT0243280006 C3L-04359.MethArray.Red.T C3L-04359 GBM Methylation Array tumor CPT0243280006 204372030022_R07C01_Red.idat 13677905 IDAT Red NA CPTAC3 43e71864-4b28-4f3c-badd-e8e4f50058a8 764ab25aecf9a10b560773c8220249a5 { 'aliquot_tag': 'ALQ_17482cd3', 'gdc_sample_type': 'Primary Tumor' } C3L-04359.miRNA-Seq.T C3L-04359 GBM miRNA-Seq tumor CPT0243280009 200403_UNC31-K00269_0274_AHCF7GBBXY_GCCAAT_S30_L002_R1_001.unaln.bam 309843615 BAM unaligned CPTAC3 5187c868-9062-449b-a2dc-51a88211022a 88c1f4f1a53f9077ac7405480a88f8f4 { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor' } C3L-04359.miRNA-Seq.T.hg38 C3L-04359 GBM miRNA-Seq tumor CPT0243280009 69909312-f440-473d-bea5-cb1a6f0da238_mirnaseq_gdc_realn.bam 361913473 BAM harmonized CPTAC3 627019e3-a8ed-43a8-93c3-f84c81f0c47e 560e381590dc5332cef08fef439d68d6 { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor' } -C3L-04359.RNA-Seq.chimeric.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 1181004a-df62-4d13-bdb2-27a01a335e1f.rna_seq.chimeric.gdc_realn.bam 200516591 BAM chimeric harmonized CPTAC3 8eb9f3cf-a214-4261-a7b2-c49b888f4d2a 22a872743f0e65581c2035c6b54d1d50 { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor' } -C3L-04359.RNA-Seq.genomic.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 1181004a-df62-4d13-bdb2-27a01a335e1f.rna_seq.genomic.gdc_realn.bam 8260896091 BAM genomic harmonized CPTAC3 d6c31cec-b8ca-47ee-b5e6-4ad4195ea5a0 974b77189e401caef4ec8f2daacbe8ab { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor' } -C3L-04359.RNA-Seq.R1_L008.T C3L-04359 GBM RNA-Seq tumor CPT0243280009 200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R1_001.fastq.gz 3681317054 FASTQ R1_L008 unaligned CPTAC3 b42d0852-cae1-4758-a678-bc012f13aea9 a93e8e0b3921e78abcf0445d4a1b8ed2 { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor' } -C3L-04359.RNA-Seq.R2_L008.T C3L-04359 GBM RNA-Seq tumor CPT0243280009 200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R2_001.fastq.gz 4083506159 FASTQ R2_L008 unaligned CPTAC3 88640d20-f2e8-42d8-a9aa-eb03821c31f7 74c62c6dffbfe2515f03bdece6dbe8b6 { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor' } -C3L-04359.RNA-Seq.transcriptome.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 1181004a-df62-4d13-bdb2-27a01a335e1f.rna_seq.transcriptome.gdc_realn.bam 7112720806 BAM transcriptome harmonized CPTAC3 7a5edb7c-fc9b-467c-afaf-0288301f3de5 b6d78fe8ffccf7e9b876484eccb54523 { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor' } +C3L-04359.RNA-Seq.chimeric.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 2f307d01-6813-4168-963e-aaed5fd7124c.rna_seq.chimeric.gdc_realn.bam 200485178 BAM chimeric harmonized CPTAC3 04bda66f-0819-487f-a037-5e55c1c43fb4 ff572dc975efd980d7416302599616f0 { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor' } +C3L-04359.RNA-Seq.genomic.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 2f307d01-6813-4168-963e-aaed5fd7124c.rna_seq.genomic.gdc_realn.bam 8261686378 BAM genomic harmonized CPTAC3 c819ba61-5163-4e38-b2eb-acb880128812 6ef7d6167d14b480b3fbff6e8f114efe { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor' } +C3L-04359.RNA-Seq.R1_L008.T C3L-04359 GBM RNA-Seq tumor CPT0243280009 200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R1_001.fastq.gz 3681317054 FASTQ R1_L008 unaligned CPTAC3 b42d0852-cae1-4758-a678-bc012f13aea9 a93e8e0b3921e78abcf0445d4a1b8ed2 { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04359.RNA-Seq.R2_L008.T C3L-04359 GBM RNA-Seq tumor CPT0243280009 200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R2_001.fastq.gz 4083506159 FASTQ R2_L008 unaligned CPTAC3 88640d20-f2e8-42d8-a9aa-eb03821c31f7 74c62c6dffbfe2515f03bdece6dbe8b6 { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04359.RNA-Seq.transcriptome.T.hg38 C3L-04359 GBM RNA-Seq tumor CPT0243280009 2f307d01-6813-4168-963e-aaed5fd7124c.rna_seq.transcriptome.gdc_realn.bam 8170499777 BAM transcriptome harmonized CPTAC3 8968fe56-0606-4c3b-bf62-7dac674d51ce 74e18cad0ca92b1a79eb9cb0eb750d75 { 'aliquot_tag': 'ALQ_87f73142', 'gdc_sample_type': 'Primary Tumor' } C3L-04359.WGS.N C3L-04359 GBM WGS blood_normal CPT0243350002 CPT0243350002.WholeGenome.RP-2158.bam 25332896750 BAM aligned CPTAC3 5b4ed69a-9a13-44a2-b07e-e2ee7b686d46 0c6178488a46048d304b5ebdad803264 { 'aliquot_tag': 'ALQ_23e9ffde', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04359.WGS.N.hg38 C3L-04359 GBM WGS blood_normal CPT0243350002 d7706205-c0e2-4a84-a0d3-5496598cbf10_wgs_gdc_realn.bam 73863141089 BAM harmonized CPTAC3 a64412f1-74c9-486b-98a7-9eba8d21f9fb 41f89f7e23e3a576a440b798399b2c61 { 'aliquot_tag': 'ALQ_23e9ffde', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04359.WGS.T C3L-04359 GBM WGS tumor CPT0243280006 CPT0243280006.WholeGenome.RP-2158.bam 23903590429 BAM aligned CPTAC3 8ed53d0f-a2e7-4652-bbe9-776bc915a317 617a44eda943cf2649a780e494e6ae5b { 'aliquot_tag': 'ALQ_17482cd3', 'gdc_sample_type': 'Primary Tumor' } @@ -15192,16 +16126,16 @@ C3L-04361.miRNA-Seq.A C3L-04361 LSCC miRNA-Seq tissue_normal CPT0243460013 20051 C3L-04361.miRNA-Seq.A.hg38 C3L-04361 LSCC miRNA-Seq tissue_normal CPT0243460013 9b592bbe-1949-463a-a615-aa7f0ccab8d1_mirnaseq_gdc_realn.bam 191108749 BAM harmonized CPTAC3 6bbdf0a6-ad0e-45ec-8d0e-82972ba26bad 9be91afd2928a0a30907293bd23594ce { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04361.miRNA-Seq.T C3L-04361 LSCC miRNA-Seq tumor CPT0243370009 200224_UNC31-K00269_0267_AHC722BBXY_CGGAAT_S37_L007_R1_001.unaln.bam 274965317 BAM unaligned CPTAC3 93aad943-4444-4144-80e7-27c990f1e253 f4fd7d3834377afb93c0d4ab388f9562 { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor' } C3L-04361.miRNA-Seq.T.hg38 C3L-04361 LSCC miRNA-Seq tumor CPT0243370009 7145f826-1435-4daa-a19a-d797720da78c_mirnaseq_gdc_realn.bam 297664255 BAM harmonized CPTAC3 aa29fda2-c6b4-4237-954a-d45c2fa619cf 26095f928ec6bbe2f77861c2c0c06ee7 { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor' } -C3L-04361.RNA-Seq.chimeric.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 5e0e87a5-e2c8-4242-999f-464711c1030a.rna_seq.chimeric.gdc_realn.bam 72960928 BAM chimeric harmonized CPTAC3 2d87fad0-0354-4d80-a903-f002be2ccea2 ae5dd1075013dc086d843349c2b03f39 { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04361.RNA-Seq.chimeric.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 5cf2b4c2-0226-4dd5-97b8-0bd87240ced6.rna_seq.chimeric.gdc_realn.bam 35118824 BAM chimeric harmonized CPTAC3 670d044b-44fd-42f0-b68b-599747fa7682 7a21b0b46cd97376b72f4797781c1bb6 { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor' } -C3L-04361.RNA-Seq.genomic.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 5e0e87a5-e2c8-4242-999f-464711c1030a.rna_seq.genomic.gdc_realn.bam 7327658783 BAM genomic harmonized CPTAC3 2db1e464-e38b-4900-b43e-022e5e014419 509b03104badc590860cac13467105e0 { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04361.RNA-Seq.genomic.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 5cf2b4c2-0226-4dd5-97b8-0bd87240ced6.rna_seq.genomic.gdc_realn.bam 7400969575 BAM genomic harmonized CPTAC3 40e460fd-d94f-45c5-be87-a47977407194 d863312ce279bbe7e5c848d4dc098b4e { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor' } -C3L-04361.RNA-Seq.R1_L002.T C3L-04361 LSCC RNA-Seq tumor CPT0243370009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TCGTAGTG-AGACTTGG_S5_L002_R1_001.fastq.gz 3669104306 FASTQ R1_L002 unaligned CPTAC3 4319f038-f4b4-4273-8fa2-ee5269adce7c 54886dc0f2c7dbab746e9e19c41a0427 { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor' } -C3L-04361.RNA-Seq.R1_L006.A C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 200505_UNC31-K00269_0277_AHGFKNBBXY_ATTGTGAA-TGCATTGC_S22_L006_R1_001.fastq.gz 3528552695 FASTQ R1_L006 unaligned CPTAC3 36a67212-56b0-4ecc-a9e5-3f1399f8df22 c5f1065efddb4319bee1969411353dfb { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04361.RNA-Seq.R2_L002.T C3L-04361 LSCC RNA-Seq tumor CPT0243370009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TCGTAGTG-AGACTTGG_S5_L002_R2_001.fastq.gz 3902034327 FASTQ R2_L002 unaligned CPTAC3 0dc815c3-389f-411d-920f-9290badb83e2 bc2c04722b790505975e47420120ab60 { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor' } -C3L-04361.RNA-Seq.R2_L006.A C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 200505_UNC31-K00269_0277_AHGFKNBBXY_ATTGTGAA-TGCATTGC_S22_L006_R2_001.fastq.gz 4006020067 FASTQ R2_L006 unaligned CPTAC3 0bddc86c-98fe-4302-a0c2-267cea3c03a0 050ed390294d9a31406b6972beea6894 { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04361.RNA-Seq.transcriptome.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 5e0e87a5-e2c8-4242-999f-464711c1030a.rna_seq.transcriptome.gdc_realn.bam 8175813746 BAM transcriptome harmonized CPTAC3 c41d182f-67ad-45bd-a1f7-dea903bb8c5c a59abd75adcb1241764068c129756b4b { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04361.RNA-Seq.transcriptome.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 5cf2b4c2-0226-4dd5-97b8-0bd87240ced6.rna_seq.transcriptome.gdc_realn.bam 8649007140 BAM transcriptome harmonized CPTAC3 cb5c3f13-89d5-4ba0-9e69-6ad2ac267e1e 8b9a56e71db82fcf4a87e4c2313af999 { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor' } +C3L-04361.RNA-Seq.chimeric.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 db6999fe-beb1-42c2-b5f5-dabb383450ca.rna_seq.chimeric.gdc_realn.bam 72961346 BAM chimeric harmonized CPTAC3 762df6c4-8d05-40a5-99b1-ad58c0061bc0 17eb286de59c1b2b457e6bcb8b6404da { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04361.RNA-Seq.chimeric.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 b59ebea7-83dc-4be4-9333-c69c9199a701.rna_seq.chimeric.gdc_realn.bam 35108731 BAM chimeric harmonized CPTAC3 f91c2353-2b7a-4f48-9adf-64246f959147 1830fee39dda990567c2083fade83ed3 { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor' } +C3L-04361.RNA-Seq.genomic.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 db6999fe-beb1-42c2-b5f5-dabb383450ca.rna_seq.genomic.gdc_realn.bam 7328783790 BAM genomic harmonized CPTAC3 77bdce50-6074-4748-833f-ad2b2b4fc387 8a82d59e3a2fe4a44604d4abe7142d2d { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04361.RNA-Seq.genomic.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 b59ebea7-83dc-4be4-9333-c69c9199a701.rna_seq.genomic.gdc_realn.bam 7402836849 BAM genomic harmonized CPTAC3 ce131bfc-8f1d-4c9b-9305-632518484c9d 54422e754375844484a4d58275c6673c { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor' } +C3L-04361.RNA-Seq.R1_L002.T C3L-04361 LSCC RNA-Seq tumor CPT0243370009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TCGTAGTG-AGACTTGG_S5_L002_R1_001.fastq.gz 3669104306 FASTQ R1_L002 unaligned CPTAC3 4319f038-f4b4-4273-8fa2-ee5269adce7c 54886dc0f2c7dbab746e9e19c41a0427 { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-04361.RNA-Seq.R1_L006.A C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 200505_UNC31-K00269_0277_AHGFKNBBXY_ATTGTGAA-TGCATTGC_S22_L006_R1_001.fastq.gz 3528552695 FASTQ R1_L006 unaligned CPTAC3 36a67212-56b0-4ecc-a9e5-3f1399f8df22 c5f1065efddb4319bee1969411353dfb { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-04361.RNA-Seq.R2_L002.T C3L-04361 LSCC RNA-Seq tumor CPT0243370009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TCGTAGTG-AGACTTGG_S5_L002_R2_001.fastq.gz 3902034327 FASTQ R2_L002 unaligned CPTAC3 0dc815c3-389f-411d-920f-9290badb83e2 bc2c04722b790505975e47420120ab60 { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-04361.RNA-Seq.R2_L006.A C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 200505_UNC31-K00269_0277_AHGFKNBBXY_ATTGTGAA-TGCATTGC_S22_L006_R2_001.fastq.gz 4006020067 FASTQ R2_L006 unaligned CPTAC3 0bddc86c-98fe-4302-a0c2-267cea3c03a0 050ed390294d9a31406b6972beea6894 { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-04361.RNA-Seq.transcriptome.A.hg38 C3L-04361 LSCC RNA-Seq tissue_normal CPT0243460013 db6999fe-beb1-42c2-b5f5-dabb383450ca.rna_seq.transcriptome.gdc_realn.bam 9285032794 BAM transcriptome harmonized CPTAC3 a241ad65-f2bb-4de1-b7bc-86b7bb5d7692 ee6ddb08b3ac4b7354be6a40329fe4d3 { 'aliquot_tag': 'ALQ_1750b461', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04361.RNA-Seq.transcriptome.T.hg38 C3L-04361 LSCC RNA-Seq tumor CPT0243370009 b59ebea7-83dc-4be4-9333-c69c9199a701.rna_seq.transcriptome.gdc_realn.bam 9700057148 BAM transcriptome harmonized CPTAC3 fccea160-9a41-4700-b915-ce03c26ece88 11de24e5e4f68086df1d599d59491077 { 'aliquot_tag': 'ALQ_cefb7536', 'gdc_sample_type': 'Primary Tumor' } C3L-04361.WGS.N C3L-04361 LSCC WGS blood_normal CPT0243530002 CPT0243530002.WholeGenome.RP-2158.bam 33559873290 BAM aligned CPTAC3 406c524c-0315-4786-a890-b57094c79f47 88a5c1123df8df294911a3be7a47eb3b { 'aliquot_tag': 'ALQ_7af0e963', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04361.WGS.N C3L-04361 LSCC WGS blood_normal CPT0243530002 CPT0243530002.WholeGenome.RP-2158.bam 33616871030 BAM aligned CPTAC3 b2ac9f92-0aa9-476e-a9aa-667db7ee8ef5 0ede51828c14f436ec326f867307cf32 { 'aliquot_tag': 'ALQ_7af0e963', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04361.WGS.N.hg38 C3L-04361 LSCC WGS blood_normal CPT0243530002 84411001-c027-4951-b815-ff6ed4482914_wgs_gdc_realn.bam 100080652674 BAM harmonized CPTAC3 62d41a03-8349-40fa-bd86-f48e41d8d9b2 9c2fdc4b28f543952b6c4ce11160f1bd { 'aliquot_tag': 'ALQ_7af0e963', 'gdc_sample_type': 'Blood Derived Normal' } @@ -15217,11 +16151,11 @@ C3L-04362.MethArray.Green.T C3L-04362 GBM Methylation Array tumor CPT0233810006 C3L-04362.MethArray.Red.T C3L-04362 GBM Methylation Array tumor CPT0233810006 204930640082_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 46aa5bb3-a8e5-4be6-a992-d220a0051db8 e63a12c1f80f0a8320840d0367dd11c2 { 'aliquot_tag': 'ALQ_b10664dd', 'gdc_sample_type': 'Primary Tumor' } C3L-04362.miRNA-Seq.T C3L-04362 GBM miRNA-Seq tumor CPT0233810012 200403_UNC31-K00269_0274_AHCF7GBBXY_ATCACG_S25_L002_R1_001.unaln.bam 218585221 BAM unaligned CPTAC3 74efb625-7e6f-4645-b8cf-38bef59d3b3e badbf1629cee3e520add04bdba9f164d { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor' } C3L-04362.miRNA-Seq.T.hg38 C3L-04362 GBM miRNA-Seq tumor CPT0233810012 dad677bc-13f3-463b-8645-8b0d2b7522a1_mirnaseq_gdc_realn.bam 243210995 BAM harmonized CPTAC3 a506ff9c-db7b-44b2-a981-d3b199e42133 54435d3e81c607640a96488e6293fe91 { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor' } -C3L-04362.RNA-Seq.chimeric.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 a42ade17-692c-4c0b-aba9-d2f6c7398f2f.rna_seq.chimeric.gdc_realn.bam 297566435 BAM chimeric harmonized CPTAC3 1b6e424f-eada-458e-85c7-172e1df051ff 0ce604d946e7ad1ef10d8fd387bde093 { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor' } -C3L-04362.RNA-Seq.genomic.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 a42ade17-692c-4c0b-aba9-d2f6c7398f2f.rna_seq.genomic.gdc_realn.bam 9084568025 BAM genomic harmonized CPTAC3 9667a93e-476e-4113-833f-3d7167c4c09a ae8e0e1de0bc1b6cde8403aa85315c34 { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor' } -C3L-04362.RNA-Seq.R1_L007.T C3L-04362 GBM RNA-Seq tumor CPT0233810012 200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R1_001.fastq.gz 4022817927 FASTQ R1_L007 unaligned CPTAC3 9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c 3b96f98595354bd05237c4cfa1d3f108 { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor' } -C3L-04362.RNA-Seq.R2_L007.T C3L-04362 GBM RNA-Seq tumor CPT0233810012 200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R2_001.fastq.gz 4498661993 FASTQ R2_L007 unaligned CPTAC3 710ec59e-1735-4dd5-ba70-ce35329cac5c b0071d3c6aaf2cd5b9f8c29fcb69096d { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor' } -C3L-04362.RNA-Seq.transcriptome.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 a42ade17-692c-4c0b-aba9-d2f6c7398f2f.rna_seq.transcriptome.gdc_realn.bam 7802517194 BAM transcriptome harmonized CPTAC3 e6c8af22-24d5-48dd-b9bc-cde8694f6971 365f5ed825dc35327933bfc1fc64dbef { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor' } +C3L-04362.RNA-Seq.chimeric.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 2facd568-e0e0-4bcd-b9be-f9631b7a7549.rna_seq.chimeric.gdc_realn.bam 297523829 BAM chimeric harmonized CPTAC3 4dc30a35-562b-4071-bca2-05cb8f375176 74e42efee53e0e9113b7eceb5117d8f9 { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor' } +C3L-04362.RNA-Seq.genomic.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 2facd568-e0e0-4bcd-b9be-f9631b7a7549.rna_seq.genomic.gdc_realn.bam 9085394425 BAM genomic harmonized CPTAC3 de450457-9a42-40e9-be64-95add2880609 b67143e7ee042b77147dafb6c86a9b7f { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor' } +C3L-04362.RNA-Seq.R1_L007.T C3L-04362 GBM RNA-Seq tumor CPT0233810012 200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R1_001.fastq.gz 4022817927 FASTQ R1_L007 unaligned CPTAC3 9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c 3b96f98595354bd05237c4cfa1d3f108 { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-04362.RNA-Seq.R2_L007.T C3L-04362 GBM RNA-Seq tumor CPT0233810012 200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R2_001.fastq.gz 4498661993 FASTQ R2_L007 unaligned CPTAC3 710ec59e-1735-4dd5-ba70-ce35329cac5c b0071d3c6aaf2cd5b9f8c29fcb69096d { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-04362.RNA-Seq.transcriptome.T.hg38 C3L-04362 GBM RNA-Seq tumor CPT0233810012 2facd568-e0e0-4bcd-b9be-f9631b7a7549.rna_seq.transcriptome.gdc_realn.bam 8945422143 BAM transcriptome harmonized CPTAC3 dbf250eb-3831-4387-a93e-50a63033bd14 9c94adb46e62f1ef6b65c117caf0c5fc { 'aliquot_tag': 'ALQ_af709185', 'gdc_sample_type': 'Primary Tumor' } C3L-04362.WGS.N C3L-04362 GBM WGS blood_normal CPT0233870002 CPT0233870002.WholeGenome.RP-2158.bam 21818987189 BAM aligned CPTAC3 48b7e473-ab3c-4dd1-85a5-170e3044b384 84ff0eb41d5d02f3b641ec787b84dec0 { 'aliquot_tag': 'ALQ_392b5564', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04362.WGS.N.hg38 C3L-04362 GBM WGS blood_normal CPT0233870002 6b29a573-c2f6-4614-9f25-14c918babfa8_wgs_gdc_realn.bam 62812379070 BAM harmonized CPTAC3 1ac3d361-eef2-4263-85c2-f8748a9379cf e9aca33ad0448904c426468091283757 { 'aliquot_tag': 'ALQ_392b5564', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04362.WGS.T C3L-04362 GBM WGS tumor CPT0233810006 CPT0233810006.WholeGenome.RP-2158.bam 25430839932 BAM aligned CPTAC3 83bea774-1862-4ec9-8f58-e724421f7f1f cb972885ed82534ba94d66f4a5708866 { 'aliquot_tag': 'ALQ_b10664dd', 'gdc_sample_type': 'Primary Tumor' } @@ -15238,16 +16172,16 @@ C3L-04365.miRNA-Seq.A C3L-04365 LUAD miRNA-Seq tissue_normal CPT0243620009 19072 C3L-04365.miRNA-Seq.A.hg38 C3L-04365 LUAD miRNA-Seq tissue_normal CPT0243620009 1e8acd45-417c-446f-86a1-284eb1f05adf_mirnaseq_gdc_realn.bam 220303342 BAM harmonized CPTAC3 cadbdf13-71ad-4e13-8147-288251fb553e ffabedb43f0bdeab308c5723f09d7614 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04365.miRNA-Seq.T C3L-04365 LUAD miRNA-Seq tumor CPT0243560010 190722_UNC31-K00269_0234_AH7VGTBBXY_CGATGT_S42_L007_R1_001.unaln.bam 192088467 BAM unaligned CPTAC3 d1523248-e71d-4153-9eb1-e8fc5bc728e6 c96167ec3a1da776f14ead5538bbdf1e { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor' } C3L-04365.miRNA-Seq.T.hg38 C3L-04365 LUAD miRNA-Seq tumor CPT0243560010 7a7a0e8c-6d93-4b0c-8575-5dca4d719703_mirnaseq_gdc_realn.bam 209739877 BAM harmonized CPTAC3 56d5f03d-1cee-4d31-93a3-471bb66ce1fc 4ce586629031de1a2dbf711f819c77c1 { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor' } -C3L-04365.RNA-Seq.chimeric.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 7baf4a58-58c7-49a8-8a2e-f388bb15add6.rna_seq.chimeric.gdc_realn.bam 42383262 BAM chimeric harmonized CPTAC3 7ee31ac7-db77-4b69-8317-3897d39e351c a661a0dae60dd993a924c05b8e2a9fa8 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04365.RNA-Seq.chimeric.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 4064713b-9dcb-4bac-8c54-1bce718a69a9.rna_seq.chimeric.gdc_realn.bam 48424718 BAM chimeric harmonized CPTAC3 e4fd12d5-8951-439f-b6e2-bd7765805eed ea230e3bb37d96ce11124549bbb93c81 { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor' } -C3L-04365.RNA-Seq.genomic.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 7baf4a58-58c7-49a8-8a2e-f388bb15add6.rna_seq.genomic.gdc_realn.bam 18112795854 BAM genomic harmonized CPTAC3 505c6b6a-822b-42b1-9684-1803550bb6b5 311ba300a8368a9af78197e5293e4ac7 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04365.RNA-Seq.genomic.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 4064713b-9dcb-4bac-8c54-1bce718a69a9.rna_seq.genomic.gdc_realn.bam 10135768787 BAM genomic harmonized CPTAC3 a25fc28d-143b-4d10-b26b-5b4f5bd0d2c1 a23c9ef0fc3f24a7e69b6b66a199a36e { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor' } -C3L-04365.RNA-Seq.R1_L002.A C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 190607_UNC32-K00270_0178_AH773TBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 5996872719 FASTQ R1_L002 unaligned CPTAC3 bc53dff1-6948-4f36-9950-acd8af23606b c1ff96428c84d1e5c75c350a72a55837 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04365.RNA-Seq.R1_L008.T C3L-04365 LUAD RNA-Seq tumor CPT0243560010 190607_UNC32-K00270_0179_BH75W2BBXY_GCGCTCTA-GCTCCGAC_S32_L008_R1_001.fastq.gz 4657284691 FASTQ R1_L008 unaligned CPTAC3 c4bfca38-143c-4f88-b32c-7e398e7bfa49 b39845ad230f086b63073c6420610dee { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor' } -C3L-04365.RNA-Seq.R2_L002.A C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 190607_UNC32-K00270_0178_AH773TBBXY_TATCGCAC-CTTAGTGT_S6_L002_R2_001.fastq.gz 7015601643 FASTQ R2_L002 unaligned CPTAC3 12001ce1-a67d-4223-9aaa-f3a1a25b4aae 06bfe8b0bf071a7d30e319ec0dc72786 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04365.RNA-Seq.R2_L008.T C3L-04365 LUAD RNA-Seq tumor CPT0243560010 190607_UNC32-K00270_0179_BH75W2BBXY_GCGCTCTA-GCTCCGAC_S32_L008_R2_001.fastq.gz 5130280500 FASTQ R2_L008 unaligned CPTAC3 c15c72fa-9846-4df6-9322-f8ee76f8731d a9e6846a8aea05fd973d85dbd3cfd1c8 { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor' } -C3L-04365.RNA-Seq.transcriptome.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 7baf4a58-58c7-49a8-8a2e-f388bb15add6.rna_seq.transcriptome.gdc_realn.bam 11652948554 BAM transcriptome harmonized CPTAC3 7a119d10-cb0f-49cb-bf4d-0b7c9e73e4a3 58b8cf4a787f8afda1e786eec22a3c23 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04365.RNA-Seq.transcriptome.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 4064713b-9dcb-4bac-8c54-1bce718a69a9.rna_seq.transcriptome.gdc_realn.bam 9273381902 BAM transcriptome harmonized CPTAC3 4716e578-f592-482c-a558-9b79d1cc8b5b 767701b2e7c7f6c14956460805b844c3 { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor' } +C3L-04365.RNA-Seq.chimeric.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 6693bfd4-6908-4f6e-8576-31ed59e40511.rna_seq.chimeric.gdc_realn.bam 42366532 BAM chimeric harmonized CPTAC3 cfcdcc59-2b93-4a59-99ad-07bed1415d9e 764a01c473d6064f2ec3f9b9101ca4f7 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04365.RNA-Seq.chimeric.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 32d60dad-82b9-4fda-a8b0-c3c2b1267455.rna_seq.chimeric.gdc_realn.bam 48412560 BAM chimeric harmonized CPTAC3 fa48c88a-5d54-49e2-84cf-9f5186373e79 084ef47d3b2523c996eb48d471a80bdd { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor' } +C3L-04365.RNA-Seq.genomic.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 6693bfd4-6908-4f6e-8576-31ed59e40511.rna_seq.genomic.gdc_realn.bam 18111332381 BAM genomic harmonized CPTAC3 f30af778-844b-40a4-8014-c5addf8d99e8 590c6fa938ac85dfed78af85e6f46f55 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04365.RNA-Seq.genomic.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 32d60dad-82b9-4fda-a8b0-c3c2b1267455.rna_seq.genomic.gdc_realn.bam 10137535266 BAM genomic harmonized CPTAC3 87f3a04d-49c6-480a-9b75-7f2ba294daa6 0bd893defa60d1b0e9e99540dbc3035b { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor' } +C3L-04365.RNA-Seq.R1_L002.A C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 190607_UNC32-K00270_0178_AH773TBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 5996872719 FASTQ R1_L002 unaligned CPTAC3 bc53dff1-6948-4f36-9950-acd8af23606b c1ff96428c84d1e5c75c350a72a55837 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-04365.RNA-Seq.R1_L008.T C3L-04365 LUAD RNA-Seq tumor CPT0243560010 190607_UNC32-K00270_0179_BH75W2BBXY_GCGCTCTA-GCTCCGAC_S32_L008_R1_001.fastq.gz 4657284691 FASTQ R1_L008 unaligned CPTAC3 c4bfca38-143c-4f88-b32c-7e398e7bfa49 b39845ad230f086b63073c6420610dee { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04365.RNA-Seq.R2_L002.A C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 190607_UNC32-K00270_0178_AH773TBBXY_TATCGCAC-CTTAGTGT_S6_L002_R2_001.fastq.gz 7015601643 FASTQ R2_L002 unaligned CPTAC3 12001ce1-a67d-4223-9aaa-f3a1a25b4aae 06bfe8b0bf071a7d30e319ec0dc72786 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-04365.RNA-Seq.R2_L008.T C3L-04365 LUAD RNA-Seq tumor CPT0243560010 190607_UNC32-K00270_0179_BH75W2BBXY_GCGCTCTA-GCTCCGAC_S32_L008_R2_001.fastq.gz 5130280500 FASTQ R2_L008 unaligned CPTAC3 c15c72fa-9846-4df6-9322-f8ee76f8731d a9e6846a8aea05fd973d85dbd3cfd1c8 { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04365.RNA-Seq.transcriptome.A.hg38 C3L-04365 LUAD RNA-Seq tissue_normal CPT0243620009 6693bfd4-6908-4f6e-8576-31ed59e40511.rna_seq.transcriptome.gdc_realn.bam 13107024558 BAM transcriptome harmonized CPTAC3 59d9a4f8-6964-4eb1-9f63-038b4ad12282 41f0fb79e2bc3c0a5bfb6a933a9fc216 { 'aliquot_tag': 'ALQ_56d66bf5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04365.RNA-Seq.transcriptome.T.hg38 C3L-04365 LUAD RNA-Seq tumor CPT0243560010 32d60dad-82b9-4fda-a8b0-c3c2b1267455.rna_seq.transcriptome.gdc_realn.bam 10547090814 BAM transcriptome harmonized CPTAC3 5118f358-7992-4dad-b504-74229c83860a 7b6c5194b78c74a40639cc21d6e5c099 { 'aliquot_tag': 'ALQ_4505367e', 'gdc_sample_type': 'Primary Tumor' } C3L-04365.WGS.N C3L-04365 LUAD WGS blood_normal CPT0243710002 CPT0243710002.WholeGenome.RP-1303.bam 85308527333 BAM aligned CPTAC3 26c73d86-e349-47d0-8ea4-461cebbb3253 6e480fe500aeba84f1616439bb4a2d53 { 'aliquot_tag': 'ALQ_4df81b08', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04365.WGS.N.hg38 C3L-04365 LUAD WGS blood_normal CPT0243710002 a6021717-cb4d-40c8-b4d9-3b72b8f84ded_wgs_gdc_realn.bam 124296999433 BAM harmonized CPTAC3 a65d2756-edfd-4640-ac1a-10ef43808513 2895c3063897784c7f2215664ae0f6ea { 'aliquot_tag': 'ALQ_4df81b08', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04365.WGS.T C3L-04365 LUAD WGS tumor CPT0243560007 CPT0243560007.WholeGenome.RP-1303.bam 60269243874 BAM aligned CPTAC3 e2d52e98-0aa4-46b9-9e63-daa5b01b51e6 4032ce7952504abb9a5af24fbec52e9a { 'aliquot_tag': 'ALQ_c27a929c', 'gdc_sample_type': 'Primary Tumor' } @@ -15266,16 +16200,16 @@ C3L-04367.miRNA-Seq.A C3L-04367 LSCC miRNA-Seq tissue_normal CPT0243940009 20051 C3L-04367.miRNA-Seq.A.hg38 C3L-04367 LSCC miRNA-Seq tissue_normal CPT0243940009 55b7d942-9086-42e6-8b2f-6abfeec5d7e1_mirnaseq_gdc_realn.bam 260382374 BAM harmonized CPTAC3 f69f0cdc-1ff2-42e4-aa4b-4bc51f83806b 97e005d5d63270d2baa207cd3526cd05 { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04367.miRNA-Seq.T C3L-04367 LSCC miRNA-Seq tumor CPT0243930009 200224_UNC31-K00269_0267_AHC722BBXY_CCAACA_S36_L007_R1_001.unaln.bam 239986011 BAM unaligned CPTAC3 c8759de0-f611-4e5a-9b29-3dc2e1baf228 f876730e9f78789d78f4fdfe185bef54 { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor' } C3L-04367.miRNA-Seq.T.hg38 C3L-04367 LSCC miRNA-Seq tumor CPT0243930009 52184acc-f4df-4503-9230-52d4e52c0033_mirnaseq_gdc_realn.bam 268205976 BAM harmonized CPTAC3 96aef43b-6a37-4be1-9540-5795e9648c2e 4bd66b3ffc22331c2c153c6ca6e30217 { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor' } -C3L-04367.RNA-Seq.chimeric.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 e7f04228-884a-413d-808e-d3f9a969d8e7.rna_seq.chimeric.gdc_realn.bam 39978766 BAM chimeric harmonized CPTAC3 97ad75f7-dac2-48b5-9cc8-493376e5450f cb47d504f3f8874984c76657336104c7 { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04367.RNA-Seq.chimeric.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 69f14b1b-1b2f-498a-9e29-1ee0ce1b1287.rna_seq.chimeric.gdc_realn.bam 29642940 BAM chimeric harmonized CPTAC3 3271ae96-1c91-4d39-b0a6-9424873dfae2 037b1a8ebac09e52d1de80b9c14b4aed { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor' } -C3L-04367.RNA-Seq.genomic.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 e7f04228-884a-413d-808e-d3f9a969d8e7.rna_seq.genomic.gdc_realn.bam 8606952976 BAM genomic harmonized CPTAC3 aeb0202c-6b75-436f-a951-0b06d1551029 4b06edc86f7a7d57416c1fd95bc602e2 { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04367.RNA-Seq.genomic.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 69f14b1b-1b2f-498a-9e29-1ee0ce1b1287.rna_seq.genomic.gdc_realn.bam 7718494829 BAM genomic harmonized CPTAC3 122e900c-f56d-4ccc-8796-fe1546bf10e6 60067dfb2d82aba305fc522c4cdc606e { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor' } -C3L-04367.RNA-Seq.R1_L001.T C3L-04367 LSCC RNA-Seq tumor CPT0243930009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATTCTGC-GACGAGAG_S4_L001_R1_001.fastq.gz 3654971803 FASTQ R1_L001 unaligned CPTAC3 87bd023a-c17c-474f-bf93-d48fa86693c2 a58d59d4c151689960a5c06c57ea8262 { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor' } -C3L-04367.RNA-Seq.R1_L006.A C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L006_R1_001.fastq.gz 4286563271 FASTQ R1_L006 unaligned CPTAC3 05be3890-a463-4fbd-96ae-deee3dde3878 341ad4e3d289b967ab65edcc22f7825a { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04367.RNA-Seq.R2_L001.T C3L-04367 LSCC RNA-Seq tumor CPT0243930009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATTCTGC-GACGAGAG_S4_L001_R2_001.fastq.gz 4050399091 FASTQ R2_L001 unaligned CPTAC3 76ca8adc-2d34-4e5a-9949-cdbaf86d1349 2aee2fe2baa5769bde093e884aa566bc { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor' } -C3L-04367.RNA-Seq.R2_L006.A C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L006_R2_001.fastq.gz 4635442449 FASTQ R2_L006 unaligned CPTAC3 d86aa58d-2fde-4e3f-9cc3-fb2dcc9276c1 0c9683559ef77a9d0341e88f4dd862b3 { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04367.RNA-Seq.transcriptome.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 e7f04228-884a-413d-808e-d3f9a969d8e7.rna_seq.transcriptome.gdc_realn.bam 9530215539 BAM transcriptome harmonized CPTAC3 d3a47f0a-1bf9-4a13-a93f-b00f0a02458f 5a9b80dd0162fafc8091cde924d57077 { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04367.RNA-Seq.transcriptome.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 69f14b1b-1b2f-498a-9e29-1ee0ce1b1287.rna_seq.transcriptome.gdc_realn.bam 9527340683 BAM transcriptome harmonized CPTAC3 f4dee477-773d-40b5-b7fa-7d5a5d74a3ec d68dc8a989b2c965ee0be87d3ce0a529 { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor' } +C3L-04367.RNA-Seq.chimeric.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 7eb1e9bb-2204-45ad-9738-9873d1ff56e2.rna_seq.chimeric.gdc_realn.bam 39961912 BAM chimeric harmonized CPTAC3 6d400425-5106-44ae-83b6-341a510466de a91f35b1350d2d23e5728699514b8c9e { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04367.RNA-Seq.chimeric.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 81c988da-201d-4974-afa5-f4c41e1deab4.rna_seq.chimeric.gdc_realn.bam 29644974 BAM chimeric harmonized CPTAC3 ad1c30b6-ded3-4b40-a41a-ce7b50e0fd7d 52d40b038a8445cb05481efcc2c7b286 { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor' } +C3L-04367.RNA-Seq.genomic.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 7eb1e9bb-2204-45ad-9738-9873d1ff56e2.rna_seq.genomic.gdc_realn.bam 8608083393 BAM genomic harmonized CPTAC3 3e45924f-6066-4895-b1a1-35926e7da93f c91e51c8ed4c1c4301a271b1daef2176 { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04367.RNA-Seq.genomic.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 81c988da-201d-4974-afa5-f4c41e1deab4.rna_seq.genomic.gdc_realn.bam 7720062068 BAM genomic harmonized CPTAC3 986b6e0b-00a5-4f33-ad95-268df3b118fc 861a9c35fd7ca8a98f1d9d6a82b66e02 { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor' } +C3L-04367.RNA-Seq.R1_L001.T C3L-04367 LSCC RNA-Seq tumor CPT0243930009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATTCTGC-GACGAGAG_S4_L001_R1_001.fastq.gz 3654971803 FASTQ R1_L001 unaligned CPTAC3 87bd023a-c17c-474f-bf93-d48fa86693c2 a58d59d4c151689960a5c06c57ea8262 { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04367.RNA-Seq.R1_L006.A C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L006_R1_001.fastq.gz 4286563271 FASTQ R1_L006 unaligned CPTAC3 05be3890-a463-4fbd-96ae-deee3dde3878 341ad4e3d289b967ab65edcc22f7825a { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-04367.RNA-Seq.R2_L001.T C3L-04367 LSCC RNA-Seq tumor CPT0243930009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATTCTGC-GACGAGAG_S4_L001_R2_001.fastq.gz 4050399091 FASTQ R2_L001 unaligned CPTAC3 76ca8adc-2d34-4e5a-9949-cdbaf86d1349 2aee2fe2baa5769bde093e884aa566bc { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04367.RNA-Seq.R2_L006.A C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L006_R2_001.fastq.gz 4635442449 FASTQ R2_L006 unaligned CPTAC3 d86aa58d-2fde-4e3f-9cc3-fb2dcc9276c1 0c9683559ef77a9d0341e88f4dd862b3 { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-04367.RNA-Seq.transcriptome.A.hg38 C3L-04367 LSCC RNA-Seq tissue_normal CPT0243940009 7eb1e9bb-2204-45ad-9738-9873d1ff56e2.rna_seq.transcriptome.gdc_realn.bam 10892159147 BAM transcriptome harmonized CPTAC3 45608d68-1780-4082-b9ef-4ed2974904f3 4cbdd1426a656614a651862a6c16f3c8 { 'aliquot_tag': 'ALQ_28c02c80', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04367.RNA-Seq.transcriptome.T.hg38 C3L-04367 LSCC RNA-Seq tumor CPT0243930009 81c988da-201d-4974-afa5-f4c41e1deab4.rna_seq.transcriptome.gdc_realn.bam 10703395760 BAM transcriptome harmonized CPTAC3 00a6a03f-c4bd-43e3-8063-a76eebaf6e81 f7dda343f9f5b63c899758e83d9f7253 { 'aliquot_tag': 'ALQ_9ae0f090', 'gdc_sample_type': 'Primary Tumor' } C3L-04367.WGS.N C3L-04367 LSCC WGS blood_normal CPT0244050002 CPT0244050002.WholeGenome.RP-2158.bam 25403172493 BAM aligned CPTAC3 ff135c1d-dc1e-46ca-af94-de34e471d172 43c17d9a7a1c64f30f8b221652d23cf0 { 'aliquot_tag': 'ALQ_60dab3fe', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04367.WGS.N.hg38 C3L-04367 LSCC WGS blood_normal CPT0244050002 66c866b7-f3dd-4c3f-9317-9d2d37e285ec_wgs_gdc_realn.bam 78025372440 BAM harmonized CPTAC3 a952e3fe-75bd-458c-9bea-ff26afd66c0f d7fd251aa82375d27a514e6f80a56579 { 'aliquot_tag': 'ALQ_60dab3fe', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04367.WGS.T C3L-04367 LSCC WGS tumor CPT0243930006 CPT0243930006.WholeGenome.RP-2158.bam 27117639764 BAM aligned CPTAC3 7d6fd656-0016-483c-9b10-4d0794c2503f 845f9b82cdc9d68bd7a7e0ea888d9911 { 'aliquot_tag': 'ALQ_a5fed01', 'gdc_sample_type': 'Primary Tumor' } @@ -15294,16 +16228,16 @@ C3L-04378.miRNA-Seq.A C3L-04378 LSCC miRNA-Seq tissue_normal CPT0253130006 20051 C3L-04378.miRNA-Seq.A.hg38 C3L-04378 LSCC miRNA-Seq tissue_normal CPT0253130006 e968ea62-5948-4a2a-a3ce-d54fd82afa39_mirnaseq_gdc_realn.bam 255662049 BAM harmonized CPTAC3 6c4b821b-2507-40e8-b51c-2735cbf05667 e42fd9af2e2004d3f8fdec1607d779c2 { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04378.miRNA-Seq.T C3L-04378 LSCC miRNA-Seq tumor CPT0253090013 200325_UNC31-K00269_0272_AHHC2NBBXY_TAATCG_S18_L001_R1_001.unaln.bam 198109814 BAM unaligned CPTAC3 60ad6ebb-f994-4403-b62b-b384bd3e9e33 d515543e4d81d8032d350299a770b3ac { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor' } C3L-04378.miRNA-Seq.T.hg38 C3L-04378 LSCC miRNA-Seq tumor CPT0253090013 8fb9d030-c6b1-46e7-98ce-db199e0438c2_mirnaseq_gdc_realn.bam 217721301 BAM harmonized CPTAC3 22017cab-9e2e-411b-9b14-e064ad844349 d3c7cfe34e113dddbcc6c695a7e0ecfb { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor' } -C3L-04378.RNA-Seq.chimeric.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 b3705919-3310-4682-bacd-eed13f4d0958.rna_seq.chimeric.gdc_realn.bam 30998700 BAM chimeric harmonized CPTAC3 16c294c5-6327-4b4e-ae2e-0c7731733413 dc1e1099ee5b7c29be6e1c89b3d2d5e2 { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04378.RNA-Seq.chimeric.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 c821da05-69a6-4d9e-822b-a8c5eeaeec6e.rna_seq.chimeric.gdc_realn.bam 67612065 BAM chimeric harmonized CPTAC3 f6851cef-9f0b-46db-a25d-26e04983d647 bcbd34d56538664827f9be63eb05e67c { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor' } -C3L-04378.RNA-Seq.genomic.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 b3705919-3310-4682-bacd-eed13f4d0958.rna_seq.genomic.gdc_realn.bam 7728065287 BAM genomic harmonized CPTAC3 7625d5d9-92ac-457c-b674-9214eaa01a1e c23b00d4b03ef466c87ebdc9b1ca1a04 { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04378.RNA-Seq.genomic.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 c821da05-69a6-4d9e-822b-a8c5eeaeec6e.rna_seq.genomic.gdc_realn.bam 8226163766 BAM genomic harmonized CPTAC3 93132565-e0b1-4142-b23d-b44893673aec c9522bbdc3650c7bf0703bb483c1adc8 { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor' } -C3L-04378.RNA-Seq.R1_L007.A C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 200505_UNC32-K00270_0246_BHH5F5BBXY_GCGCAAGC-TCACGCCG_S27_L007_R1_001.fastq.gz 3418029399 FASTQ R1_L007 unaligned CPTAC3 bf5e8149-2c96-4d05-97be-0c728c51af90 eba722686f88f2d8afab420bec7706af { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04378.RNA-Seq.R1_L007.T C3L-04378 LSCC RNA-Seq tumor CPT0253090013 200428_UNC31-K00269_0275_AHGCJVBBXY_CGCTATGT-TCCGACAC_S26_L007_R1_001.fastq.gz 4228164914 FASTQ R1_L007 unaligned CPTAC3 8d742e60-e2ad-4582-86e7-fafbc1dd0c23 21dad26826390cd37d598c85bf9a9d14 { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor' } -C3L-04378.RNA-Seq.R2_L007.A C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 200505_UNC32-K00270_0246_BHH5F5BBXY_GCGCAAGC-TCACGCCG_S27_L007_R2_001.fastq.gz 4223918706 FASTQ R2_L007 unaligned CPTAC3 d616db06-54ba-454a-bd91-9356ab737e17 ab39c16b32548f17ab6a96ab18882331 { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04378.RNA-Seq.R2_L007.T C3L-04378 LSCC RNA-Seq tumor CPT0253090013 200428_UNC31-K00269_0275_AHGCJVBBXY_CGCTATGT-TCCGACAC_S26_L007_R2_001.fastq.gz 4348810230 FASTQ R2_L007 unaligned CPTAC3 0c78e1e1-c0dd-48d6-a34b-6ef85a299153 b8ef57e0c39a8401e1da88786ed47dc8 { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor' } -C3L-04378.RNA-Seq.transcriptome.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 b3705919-3310-4682-bacd-eed13f4d0958.rna_seq.transcriptome.gdc_realn.bam 8265983415 BAM transcriptome harmonized CPTAC3 5c76ae5b-775e-4b34-b587-6f1d3213171d 26dccb49e06d75dc67eff82ad67dd170 { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04378.RNA-Seq.transcriptome.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 c821da05-69a6-4d9e-822b-a8c5eeaeec6e.rna_seq.transcriptome.gdc_realn.bam 9540800603 BAM transcriptome harmonized CPTAC3 b0fcf0c5-3310-4f0e-8fee-0777e5aa1c8c 8b2f1cd9f5cf057198c757548c3a6c18 { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor' } +C3L-04378.RNA-Seq.chimeric.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 680a7b90-02f0-46ac-85d2-c46a4f7317f9.rna_seq.chimeric.gdc_realn.bam 30990373 BAM chimeric harmonized CPTAC3 bba4fe68-93f1-4093-be92-f47efdfde70c 683c4e13c9054ba18f786bbe117dec9e { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04378.RNA-Seq.chimeric.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 33199514-222e-4222-83fa-0c43b076d8d7.rna_seq.chimeric.gdc_realn.bam 67627609 BAM chimeric harmonized CPTAC3 c4f4805e-240c-48b3-8f8a-b99080b531b0 afa3030d0e15d5ec36c4ce27079216fd { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor' } +C3L-04378.RNA-Seq.genomic.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 680a7b90-02f0-46ac-85d2-c46a4f7317f9.rna_seq.genomic.gdc_realn.bam 7728998345 BAM genomic harmonized CPTAC3 4a022d51-cdec-42c3-9acc-776b166e8053 2e38c2ac4cad7d50ebc14c485c8859fd { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04378.RNA-Seq.genomic.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 33199514-222e-4222-83fa-0c43b076d8d7.rna_seq.genomic.gdc_realn.bam 8227597738 BAM genomic harmonized CPTAC3 91cdaa4c-4768-48f4-9d6a-764750e074c6 18d2bd13ffb837fcd902a3a638c5b8ec { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor' } +C3L-04378.RNA-Seq.R1_L007.A C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 200505_UNC32-K00270_0246_BHH5F5BBXY_GCGCAAGC-TCACGCCG_S27_L007_R1_001.fastq.gz 3418029399 FASTQ R1_L007 unaligned CPTAC3 bf5e8149-2c96-4d05-97be-0c728c51af90 eba722686f88f2d8afab420bec7706af { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-04378.RNA-Seq.R1_L007.T C3L-04378 LSCC RNA-Seq tumor CPT0253090013 200428_UNC31-K00269_0275_AHGCJVBBXY_CGCTATGT-TCCGACAC_S26_L007_R1_001.fastq.gz 4228164914 FASTQ R1_L007 unaligned CPTAC3 8d742e60-e2ad-4582-86e7-fafbc1dd0c23 21dad26826390cd37d598c85bf9a9d14 { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-04378.RNA-Seq.R2_L007.A C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 200505_UNC32-K00270_0246_BHH5F5BBXY_GCGCAAGC-TCACGCCG_S27_L007_R2_001.fastq.gz 4223918706 FASTQ R2_L007 unaligned CPTAC3 d616db06-54ba-454a-bd91-9356ab737e17 ab39c16b32548f17ab6a96ab18882331 { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-04378.RNA-Seq.R2_L007.T C3L-04378 LSCC RNA-Seq tumor CPT0253090013 200428_UNC31-K00269_0275_AHGCJVBBXY_CGCTATGT-TCCGACAC_S26_L007_R2_001.fastq.gz 4348810230 FASTQ R2_L007 unaligned CPTAC3 0c78e1e1-c0dd-48d6-a34b-6ef85a299153 b8ef57e0c39a8401e1da88786ed47dc8 { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-04378.RNA-Seq.transcriptome.A.hg38 C3L-04378 LSCC RNA-Seq tissue_normal CPT0253130006 680a7b90-02f0-46ac-85d2-c46a4f7317f9.rna_seq.transcriptome.gdc_realn.bam 9406503853 BAM transcriptome harmonized CPTAC3 eaaec588-9a2b-4303-8b77-abc32fa902a3 460d34f1cb3c26079b6123459105b5ae { 'aliquot_tag': 'ALQ_2aa66ff2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04378.RNA-Seq.transcriptome.T.hg38 C3L-04378 LSCC RNA-Seq tumor CPT0253090013 33199514-222e-4222-83fa-0c43b076d8d7.rna_seq.transcriptome.gdc_realn.bam 10793078534 BAM transcriptome harmonized CPTAC3 cbae9049-43dc-4f3a-b4ac-05f058e68c2e 66fa43eb4d3d69cf943ec8604d43c63f { 'aliquot_tag': 'ALQ_c23b6138', 'gdc_sample_type': 'Primary Tumor' } C3L-04378.WGS.N C3L-04378 LSCC WGS blood_normal CPT0253240002 CPT0253240002.WholeGenome.RP-2158.bam 30279299575 BAM aligned CPTAC3 24a0a9ea-bff7-4403-89b4-5705129d6245 0ab83e8f6d4aa93cc27946a1c42109f9 { 'aliquot_tag': 'ALQ_197f0555', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04378.WGS.N.hg38 C3L-04378 LSCC WGS blood_normal CPT0253240002 862ce011-5c33-4644-8531-1b57170aa9aa_wgs_gdc_realn.bam 91657286140 BAM harmonized CPTAC3 442a8e18-cb34-4035-af1c-6dd4be88647c 0a5d36be679db7ce5607d6673b8ec100 { 'aliquot_tag': 'ALQ_197f0555', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04378.WGS.T C3L-04378 LSCC WGS tumor CPT0253090006 CPT0253090006.WholeGenome.RP-2158.bam 24254876470 BAM aligned CPTAC3 d4e5d622-26fa-4af6-a200-4f7cfb0a2402 7586783811b2158f7464aac883d94255 { 'aliquot_tag': 'ALQ_ab4aa4f6', 'gdc_sample_type': 'Primary Tumor' } @@ -15322,16 +16256,16 @@ C3L-04379.miRNA-Seq.A C3L-04379 LSCC miRNA-Seq tissue_normal CPT0258830009 20051 C3L-04379.miRNA-Seq.A.hg38 C3L-04379 LSCC miRNA-Seq tissue_normal CPT0258830009 f59b66fd-e54e-40d7-b4c0-8b3df7add380_mirnaseq_gdc_realn.bam 304081288 BAM harmonized CPTAC3 ab19416a-c1fd-4e2d-8a59-657040d7f97c 39fa170ab6fd38abb7a21967ae047e6e { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04379.miRNA-Seq.T C3L-04379 LSCC miRNA-Seq tumor CPT0258790009 200224_UNC31-K00269_0267_AHC722BBXY_TAGCTT_S10_L006_R1_001.unaln.bam 235231599 BAM unaligned CPTAC3 807cebfa-a3e9-4127-9ae5-dfef6c8bfdf1 0aeb96e477996612d23c5eeba5d67797 { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor' } C3L-04379.miRNA-Seq.T.hg38 C3L-04379 LSCC miRNA-Seq tumor CPT0258790009 4495da1a-11be-495a-b806-4ad64b4bd81f_mirnaseq_gdc_realn.bam 260039928 BAM harmonized CPTAC3 c5633da2-b2a2-446d-b191-a0f1e90cafff 7ec8c36a14d7943c32eb6d7032ba6d14 { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor' } -C3L-04379.RNA-Seq.chimeric.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 1024ae42-e9e2-4abc-ad4e-ac5139ffa381.rna_seq.chimeric.gdc_realn.bam 102410248 BAM chimeric harmonized CPTAC3 4cbe34a3-54f9-4146-bbe1-ecff63f3ee43 04cb820626fcd4c549fba86f6783591d { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04379.RNA-Seq.chimeric.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 c6ef7318-c312-44d9-b28e-7d21efa968e7.rna_seq.chimeric.gdc_realn.bam 113183007 BAM chimeric harmonized CPTAC3 437ef0a3-81ad-4e1e-a125-12d6069fd16d eea7fadd4481d309ad6cdf78785c89ef { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor' } -C3L-04379.RNA-Seq.genomic.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 1024ae42-e9e2-4abc-ad4e-ac5139ffa381.rna_seq.genomic.gdc_realn.bam 9198858394 BAM genomic harmonized CPTAC3 510ae06c-d3d8-4c6b-8f7f-9821cbf8bf9c 4a1ed2558ca3d6d78ffde252adc40d58 { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04379.RNA-Seq.genomic.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 c6ef7318-c312-44d9-b28e-7d21efa968e7.rna_seq.genomic.gdc_realn.bam 7333865271 BAM genomic harmonized CPTAC3 79b65fb3-722e-48d7-b022-544a19a15939 ed8de8a68f6edbccd8fe104c2bb29b04 { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor' } -C3L-04379.RNA-Seq.R1_L003.A C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAATAC-TTCTAACG_S10_L003_R1_001.fastq.gz 4402756906 FASTQ R1_L003 unaligned CPTAC3 a67e93ba-923d-4ef4-9215-1d9399680796 dc72fc93c27915680196271d4df3136a { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04379.RNA-Seq.R1_L007.T C3L-04379 LSCC RNA-Seq tumor CPT0258790009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CATAATAC-TTCTAACG_S26_L007_R1_001.fastq.gz 3602507671 FASTQ R1_L007 unaligned CPTAC3 375cfed3-d945-482e-8f3a-e44533ff20d4 56d2ba42d86c24bda1ac5b0269f36807 { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor' } -C3L-04379.RNA-Seq.R2_L003.A C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAATAC-TTCTAACG_S10_L003_R2_001.fastq.gz 4910717795 FASTQ R2_L003 unaligned CPTAC3 35d9c7a4-08c2-4aee-a984-22634bcc7fb2 c64dbfae7adc73caeddb8481e13974b1 { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04379.RNA-Seq.R2_L007.T C3L-04379 LSCC RNA-Seq tumor CPT0258790009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CATAATAC-TTCTAACG_S26_L007_R2_001.fastq.gz 3802883422 FASTQ R2_L007 unaligned CPTAC3 52102e19-6dce-4914-aad1-5b6ba6ad1419 bb5ea8bcfff2980953f1f95a0cc5bea0 { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor' } -C3L-04379.RNA-Seq.transcriptome.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 1024ae42-e9e2-4abc-ad4e-ac5139ffa381.rna_seq.transcriptome.gdc_realn.bam 10698421430 BAM transcriptome harmonized CPTAC3 6c2402f8-72ac-4fe2-aaf2-b8c582fc2f0e da2340bdb2079f18520414211a4d21cf { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04379.RNA-Seq.transcriptome.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 c6ef7318-c312-44d9-b28e-7d21efa968e7.rna_seq.transcriptome.gdc_realn.bam 6731825446 BAM transcriptome harmonized CPTAC3 01d43615-d504-4873-85ee-16c362e19b26 ebef7f52c3972c96be7a30463ff1c11c { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor' } +C3L-04379.RNA-Seq.chimeric.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 c108a201-cedd-46ec-8f4d-bd8f5c25f898.rna_seq.chimeric.gdc_realn.bam 102415248 BAM chimeric harmonized CPTAC3 6bfc5a0e-ada3-4173-bd9f-ed0d2f601f84 070e9b2bb6627bb2e8638159b0850438 { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04379.RNA-Seq.chimeric.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 4a115b09-f6a6-496c-a4ce-80af07754ef3.rna_seq.chimeric.gdc_realn.bam 113172074 BAM chimeric harmonized CPTAC3 3d08b5b7-623e-49c7-93b9-1cf009cd845c ddaa77ed29ed36b8c26de5e5f2f08590 { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor' } +C3L-04379.RNA-Seq.genomic.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 c108a201-cedd-46ec-8f4d-bd8f5c25f898.rna_seq.genomic.gdc_realn.bam 9200780146 BAM genomic harmonized CPTAC3 8c011a66-a1eb-4c3b-91f0-cd64bf51fb45 2ace3ba30bdc54b4756fa05b03ebc746 { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04379.RNA-Seq.genomic.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 4a115b09-f6a6-496c-a4ce-80af07754ef3.rna_seq.genomic.gdc_realn.bam 7334872781 BAM genomic harmonized CPTAC3 2af3f8c0-c09f-4b6f-a0e0-4530b4dd303f cf5d194892cfd59a90ffef3758f23ec7 { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor' } +C3L-04379.RNA-Seq.R1_L003.A C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAATAC-TTCTAACG_S10_L003_R1_001.fastq.gz 4402756906 FASTQ R1_L003 unaligned CPTAC3 a67e93ba-923d-4ef4-9215-1d9399680796 dc72fc93c27915680196271d4df3136a { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-04379.RNA-Seq.R1_L007.T C3L-04379 LSCC RNA-Seq tumor CPT0258790009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CATAATAC-TTCTAACG_S26_L007_R1_001.fastq.gz 3602507671 FASTQ R1_L007 unaligned CPTAC3 375cfed3-d945-482e-8f3a-e44533ff20d4 56d2ba42d86c24bda1ac5b0269f36807 { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-04379.RNA-Seq.R2_L003.A C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 200505_UNC31-K00269_0277_AHGFKNBBXY_CATAATAC-TTCTAACG_S10_L003_R2_001.fastq.gz 4910717795 FASTQ R2_L003 unaligned CPTAC3 35d9c7a4-08c2-4aee-a984-22634bcc7fb2 c64dbfae7adc73caeddb8481e13974b1 { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-04379.RNA-Seq.R2_L007.T C3L-04379 LSCC RNA-Seq tumor CPT0258790009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CATAATAC-TTCTAACG_S26_L007_R2_001.fastq.gz 3802883422 FASTQ R2_L007 unaligned CPTAC3 52102e19-6dce-4914-aad1-5b6ba6ad1419 bb5ea8bcfff2980953f1f95a0cc5bea0 { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-04379.RNA-Seq.transcriptome.A.hg38 C3L-04379 LSCC RNA-Seq tissue_normal CPT0258830009 c108a201-cedd-46ec-8f4d-bd8f5c25f898.rna_seq.transcriptome.gdc_realn.bam 12274071631 BAM transcriptome harmonized CPTAC3 a642ca7d-2bb6-4e6b-bd0a-ba76aa35cfa8 3a9aaf8a6fbc7dda9651d3f30c99178a { 'aliquot_tag': 'ALQ_9f117751', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04379.RNA-Seq.transcriptome.T.hg38 C3L-04379 LSCC RNA-Seq tumor CPT0258790009 4a115b09-f6a6-496c-a4ce-80af07754ef3.rna_seq.transcriptome.gdc_realn.bam 7612933545 BAM transcriptome harmonized CPTAC3 4d2c0f00-9f43-4915-aa8a-f027631ca939 a51f8fb6e196993997d588753e393619 { 'aliquot_tag': 'ALQ_24f7dd25', 'gdc_sample_type': 'Primary Tumor' } C3L-04379.WGS.N C3L-04379 LSCC WGS blood_normal CPT0258940002 CPT0258940002.WholeGenome.RP-2158.bam 22380669080 BAM aligned CPTAC3 d5198e12-66f9-4b64-a782-e494f0053eec ba8d5e5bb03d69adb1b03d2c71e34124 { 'aliquot_tag': 'ALQ_71bfa16c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04379.WGS.N.hg38 C3L-04379 LSCC WGS blood_normal CPT0258940002 626f0195-bf7f-46f9-8461-8ca13e90aa70_wgs_gdc_realn.bam 65992264424 BAM harmonized CPTAC3 fd240ca7-62df-4822-b84f-556db25e7339 939172114cb901bf7727568b54dc7643 { 'aliquot_tag': 'ALQ_71bfa16c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04379.WGS.T C3L-04379 LSCC WGS tumor CPT0258790006 CPT0258790006.WholeGenome.RP-2158.bam 21247752803 BAM aligned CPTAC3 bb4b23e1-83f6-4b1a-b242-89a8e7705cf6 2b9ae148eb4fb65b051db57b19cb29f8 { 'aliquot_tag': 'ALQ_b448c0b4', 'gdc_sample_type': 'Primary Tumor' } @@ -15352,12 +16286,12 @@ C3L-04391.miRNA-Seq.T C3L-04391 LSCC miRNA-Seq tumor CPT0234560009 190206_UNC31- C3L-04391.miRNA-Seq.T.hg38 C3L-04391 LSCC miRNA-Seq tumor CPT0234560009 8a900578-d77f-44a3-b9a7-e63231305ede_mirnaseq_gdc_realn.bam 212571525 BAM harmonized CPTAC3 2c3fefef-a8a4-4786-b6be-b472530da10d 3e1db801858cf196319b2080528bec2d { 'aliquot_tag': 'ALQ_eaa0880c', 'gdc_sample_type': 'Primary Tumor' } C3L-04391.RNA-Seq.chimeric.A.hg38 C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 98c0620f-aa5a-4d6f-b053-f1dcbb7083dd.rna_seq.chimeric.gdc_realn.bam 124404815 BAM chimeric harmonized CPTAC3 126b5444-22b8-4c37-8de9-ed0e3d4e455c 7f7bbaca1689468c5e5725e20d63def8 { 'aliquot_tag': 'ALQ_5590366d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04391.RNA-Seq.chimeric.T.hg38 C3L-04391 LSCC RNA-Seq tumor CPT0234560009 588bd50f-1bbc-4fec-ace8-75bd5666d125.rna_seq.chimeric.gdc_realn.bam 381544659 BAM chimeric harmonized CPTAC3 1c4b09b5-859d-40bf-acc1-941bbd21f724 75695776f9e77e1b1865cabfe66bd2d8 { 'aliquot_tag': 'ALQ_eaa0880c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04391.RNA-Seq.genomic.A.hg38 C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 98c0620f-aa5a-4d6f-b053-f1dcbb7083dd.rna_seq.genomic.gdc_realn.bam 7341117208 BAM genomic harmonized CPTAC3 5726a48e-03a1-4fc0-afbe-d124a490ff02 3aa0c77e5b79ec266d97b24b5c17e88b { 'aliquot_tag': 'ALQ_5590366d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04391.RNA-Seq.genomic.T.hg38 C3L-04391 LSCC RNA-Seq tumor CPT0234560009 588bd50f-1bbc-4fec-ace8-75bd5666d125.rna_seq.genomic.gdc_realn.bam 8602160936 BAM genomic harmonized CPTAC3 91d970f7-3322-4a1b-b7d6-6b51d986af6e e358ddb83af27bc16b860899c90a1f3a { 'aliquot_tag': 'ALQ_eaa0880c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04391.RNA-Seq.R1_L001.T C3L-04391 LSCC RNA-Seq tumor CPT0234560009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3849084503 FASTQ R1_L001 unaligned CPTAC3 22821061-ec85-4e1d-a424-b63a52995078 8e3ffdcbe574a8fa3a32a0f3590ba85a { 'aliquot_tag': 'ALQ_eaa0880c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04391.RNA-Seq.R1_L007.A C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L007_R1_001.fastq.gz 3469292179 FASTQ R1_L007 unaligned CPTAC3 6ff9da82-c1d1-48bb-b2ff-c5241ff3bd17 9c3553ff54bce5df7f8f00c2a2598b98 { 'aliquot_tag': 'ALQ_5590366d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04391.RNA-Seq.R2_L001.T C3L-04391 LSCC RNA-Seq tumor CPT0234560009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4468925645 FASTQ R2_L001 unaligned CPTAC3 19cba40a-ed47-40ef-a828-905b782c3ecd 48242ebff289dd82f91da1c9deb335fe { 'aliquot_tag': 'ALQ_eaa0880c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04391.RNA-Seq.R2_L007.A C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L007_R2_001.fastq.gz 3890281049 FASTQ R2_L007 unaligned CPTAC3 f7e9960d-2451-4a44-a3a2-539450cf26d1 07a79b511d20f77332dfa6f9c39232a3 { 'aliquot_tag': 'ALQ_5590366d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04391.RNA-Seq.genomic.A.hg38 C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 98c0620f-aa5a-4d6f-b053-f1dcbb7083dd.rna_seq.genomic.gdc_realn.bam 7341117208 BAM genomic harmonized CPTAC3 0ff537c2-6f6f-4a57-b58e-f8ca17e7b13b 3aa0c77e5b79ec266d97b24b5c17e88b { 'aliquot_tag': 'ALQ_5590366d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04391.RNA-Seq.genomic.T.hg38 C3L-04391 LSCC RNA-Seq tumor CPT0234560009 588bd50f-1bbc-4fec-ace8-75bd5666d125.rna_seq.genomic.gdc_realn.bam 8602160936 BAM genomic harmonized CPTAC3 28a222a2-f191-4186-ab67-1e7039e5117e e358ddb83af27bc16b860899c90a1f3a { 'aliquot_tag': 'ALQ_eaa0880c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04391.RNA-Seq.R1_L001.T C3L-04391 LSCC RNA-Seq tumor CPT0234560009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3849084503 FASTQ R1_L001 unaligned CPTAC3 22821061-ec85-4e1d-a424-b63a52995078 8e3ffdcbe574a8fa3a32a0f3590ba85a { 'aliquot_tag': 'ALQ_eaa0880c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04391.RNA-Seq.R1_L007.A C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L007_R1_001.fastq.gz 3469292179 FASTQ R1_L007 unaligned CPTAC3 6ff9da82-c1d1-48bb-b2ff-c5241ff3bd17 9c3553ff54bce5df7f8f00c2a2598b98 { 'aliquot_tag': 'ALQ_5590366d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-04391.RNA-Seq.R2_L001.T C3L-04391 LSCC RNA-Seq tumor CPT0234560009 190208_UNC32-K00270_0146_BH3V2WBBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4468925645 FASTQ R2_L001 unaligned CPTAC3 19cba40a-ed47-40ef-a828-905b782c3ecd 48242ebff289dd82f91da1c9deb335fe { 'aliquot_tag': 'ALQ_eaa0880c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04391.RNA-Seq.R2_L007.A C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L007_R2_001.fastq.gz 3890281049 FASTQ R2_L007 unaligned CPTAC3 f7e9960d-2451-4a44-a3a2-539450cf26d1 07a79b511d20f77332dfa6f9c39232a3 { 'aliquot_tag': 'ALQ_5590366d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3L-04391.RNA-Seq.transcriptome.A.hg38 C3L-04391 LSCC RNA-Seq tissue_normal CPT0234580009 98c0620f-aa5a-4d6f-b053-f1dcbb7083dd.rna_seq.transcriptome.gdc_realn.bam 8312179071 BAM transcriptome harmonized CPTAC3 7fc54b30-dabc-4052-ae1e-079b22782bff 82317bcd0bc96e1e86426d4e42c5773e { 'aliquot_tag': 'ALQ_5590366d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04391.RNA-Seq.transcriptome.T.hg38 C3L-04391 LSCC RNA-Seq tumor CPT0234560009 588bd50f-1bbc-4fec-ace8-75bd5666d125.rna_seq.transcriptome.gdc_realn.bam 10692370655 BAM transcriptome harmonized CPTAC3 3a34120c-b424-4a12-ab63-095e5e9857d3 a9b2ecfd99e3a03b9b90801e34c6cd45 { 'aliquot_tag': 'ALQ_eaa0880c', 'gdc_sample_type': 'Primary Tumor' } C3L-04391.WGS.N C3L-04391 LSCC WGS blood_normal CPT0235180002 CPT0235180002.WholeGenome.RP-1303.bam 54864648711 BAM aligned CPTAC3 d767bc8a-0868-4ea2-8e81-15a14cd88b0a 13a72c4e10a7d80a0e0ef7b2b95a0bea { 'aliquot_tag': 'ALQ_ffa4a647', 'gdc_sample_type': 'Blood Derived Normal' } @@ -15374,11 +16308,11 @@ C3L-04392.MethArray.Green.T C3L-04392 GBM Methylation Array tumor CPT0393310006 C3L-04392.MethArray.Red.T C3L-04392 GBM Methylation Array tumor CPT0393310006 204930640042_R08C01_Red.idat 13677893 IDAT Red NA CPTAC3 9989b270-5a19-46cc-a174-d1e227eab9ca b735849af9a4deb8c7396b5d74464180 { 'aliquot_tag': 'ALQ_5d7a9c95', 'gdc_sample_type': 'Primary Tumor' } C3L-04392.miRNA-Seq.T C3L-04392 GBM miRNA-Seq tumor CPT0393310009 201209_UNC32-K00270_0265_AHJ55WBBXY_TAGCTT_S38_L007_R1_001.unaln.bam 358392894 BAM unaligned CPTAC3 5432af42-018a-4faa-8492-77175e136ac0 47bf2742dd7a32550d450c429c968694 { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor' } C3L-04392.miRNA-Seq.T.hg38 C3L-04392 GBM miRNA-Seq tumor CPT0393310009 b7e66dc0-51bd-4974-b239-bcbef53ddef2_mirnaseq_gdc_realn.bam 383688020 BAM harmonized CPTAC3 aed02248-4e4d-4b98-ab13-bc1ed0167520 e781763afc0bd961eb17d5f454b63162 { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor' } -C3L-04392.RNA-Seq.chimeric.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 0475a17a-d878-4068-92d9-63348e5c769f.rna_seq.chimeric.gdc_realn.bam 533290308 BAM chimeric harmonized CPTAC3 ee94b059-b600-4cfb-b243-925ff1add9c2 5051f0688a34c4a1d32200c273fca218 { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor' } -C3L-04392.RNA-Seq.genomic.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 0475a17a-d878-4068-92d9-63348e5c769f.rna_seq.genomic.gdc_realn.bam 8483865279 BAM genomic harmonized CPTAC3 05a0f689-ebd2-4d68-a658-f3a4b54b391c af3569d9101df46fb6666ca453230185 { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor' } -C3L-04392.RNA-Seq.R1_L001.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 4077700493 FASTQ R1_L001 unaligned CPTAC3 d815c7ac-1edc-4e57-a53b-947849bdb025 7f57961d1f57e808fba6a0a2d9b8869f { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor' } -C3L-04392.RNA-Seq.R2_L001.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 4606344863 FASTQ R2_L001 unaligned CPTAC3 65353cb8-0cb1-4747-a95d-b11ff0bc7361 5cdf19e1b0bae31ef1932a8e1f1e687d { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor' } -C3L-04392.RNA-Seq.transcriptome.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 0475a17a-d878-4068-92d9-63348e5c769f.rna_seq.transcriptome.gdc_realn.bam 8501340103 BAM transcriptome harmonized CPTAC3 ef6fcbfe-67bc-46df-83e4-ed1599448f00 544644770eed61ca11e79664103837b6 { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor' } +C3L-04392.RNA-Seq.chimeric.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 3ec7cb42-3f03-460d-8b2b-d6a791c81474.rna_seq.chimeric.gdc_realn.bam 533313906 BAM chimeric harmonized CPTAC3 4b84971b-14ac-4743-baea-4f863f514e45 85c88b8435686ed850e3edae2b8a29de { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor' } +C3L-04392.RNA-Seq.genomic.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 3ec7cb42-3f03-460d-8b2b-d6a791c81474.rna_seq.genomic.gdc_realn.bam 8489469921 BAM genomic harmonized CPTAC3 07d0687f-64ed-47d5-99ed-28cd07a64da9 713f418df941ff03517268dc926f2ce2 { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor' } +C3L-04392.RNA-Seq.R1_L001.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 4077700493 FASTQ R1_L001 unaligned CPTAC3 d815c7ac-1edc-4e57-a53b-947849bdb025 7f57961d1f57e808fba6a0a2d9b8869f { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04392.RNA-Seq.R2_L001.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 4606344863 FASTQ R2_L001 unaligned CPTAC3 65353cb8-0cb1-4747-a95d-b11ff0bc7361 5cdf19e1b0bae31ef1932a8e1f1e687d { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04392.RNA-Seq.transcriptome.T.hg38 C3L-04392 GBM RNA-Seq tumor CPT0393310009 3ec7cb42-3f03-460d-8b2b-d6a791c81474.rna_seq.transcriptome.gdc_realn.bam 9858589719 BAM transcriptome harmonized CPTAC3 de27e4da-ab2c-44f9-b7ff-b3a83a916736 3dc81c530569b7d39f188f1044515bc8 { 'aliquot_tag': 'ALQ_cdc58104', 'gdc_sample_type': 'Primary Tumor' } C3L-04392.WGS.N C3L-04392 GBM WGS blood_normal CPT0392370002 CPT0392370002.WholeGenome.RP-2158.bam 24049436111 BAM aligned CPTAC3 f243bcd7-9195-4d38-817f-618977fb28eb c2775ba6b3e3e724e3ee4db10ef63778 { 'aliquot_tag': 'ALQ_7320a698', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04392.WGS.N.hg38 C3L-04392 GBM WGS blood_normal CPT0392370002 ff58cfa7-a42b-4c49-81b2-a55b9d871181_wgs_gdc_realn.bam 71169654491 BAM harmonized CPTAC3 322aa7fa-fc71-4c68-9bc9-72cc87cfb567 8f527a3751c360fd4c71b267d404420a { 'aliquot_tag': 'ALQ_7320a698', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04392.WGS.T C3L-04392 GBM WGS tumor CPT0393310006 CPT0393310006.WholeGenome.RP-2158.bam 25106387064 BAM aligned CPTAC3 35aee152-5492-4664-8706-ca92247a2a81 f55a8d674bd88870ed7e381417c7214e { 'aliquot_tag': 'ALQ_5d7a9c95', 'gdc_sample_type': 'Primary Tumor' } @@ -15393,11 +16327,11 @@ C3L-04402.MethArray.Red.A C3L-04402 LSCC Methylation Array tissue_normal CPT0281 C3L-04402.MethArray.Red.T C3L-04402 LSCC Methylation Array tumor CPT0281060006 204372030022_R08C01_Red.idat 13677905 IDAT Red NA CPTAC3 cddbec4b-8215-443f-83c1-17d101aed108 f62540d1747e4940920c7bd130415a1e { 'aliquot_tag': 'ALQ_258037df', 'gdc_sample_type': 'Primary Tumor' } C3L-04402.miRNA-Seq.T C3L-04402 LSCC miRNA-Seq tumor CPT0281060009 200224_UNC31-K00269_0267_AHC722BBXY_GTAGAG_S17_L008_R1_001.unaln.bam 194460114 BAM unaligned CPTAC3 94230a07-3396-48b9-b03e-5b65b85151a0 d0b24cb838140b87202dbe9c338b1872 { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor' } C3L-04402.miRNA-Seq.T.hg38 C3L-04402 LSCC miRNA-Seq tumor CPT0281060009 3905789c-2b5b-48e1-aaf6-da28dbe90e61_mirnaseq_gdc_realn.bam 220711963 BAM harmonized CPTAC3 2581b871-3cf7-425d-b0d1-5fa821dc1cc8 ded6b402250dcec8e5c300eb9a73c7a6 { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor' } -C3L-04402.RNA-Seq.chimeric.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 1944e5e3-662f-4a7e-aff1-953355ad15f3.rna_seq.chimeric.gdc_realn.bam 23110808 BAM chimeric harmonized CPTAC3 0f074266-f87e-4f83-b311-16bd166e1f67 9d7c39921ccdbe8b6b44a77cd4905ca7 { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor' } -C3L-04402.RNA-Seq.genomic.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 1944e5e3-662f-4a7e-aff1-953355ad15f3.rna_seq.genomic.gdc_realn.bam 6923081677 BAM genomic harmonized CPTAC3 c13ba338-adc4-4544-86cc-bb537536e260 e743ce68958a9cd4cb5cec3d2d9a6ea8 { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor' } -C3L-04402.RNA-Seq.R1_L001.T C3L-04402 LSCC RNA-Seq tumor CPT0281060009 200428_UNC31-K00269_0276_BHH5TMBBXY_TAATACAG-ATATTCAC_S1_L001_R1_001.fastq.gz 3116262455 FASTQ R1_L001 unaligned CPTAC3 fd64d4c2-e55f-4b11-8b79-424993ec283f 21bae8de5a63f2c0343ea8e28bbe02ff { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor' } -C3L-04402.RNA-Seq.R2_L001.T C3L-04402 LSCC RNA-Seq tumor CPT0281060009 200428_UNC31-K00269_0276_BHH5TMBBXY_TAATACAG-ATATTCAC_S1_L001_R2_001.fastq.gz 3434270972 FASTQ R2_L001 unaligned CPTAC3 fcae66d9-1278-4d7a-85c1-0f8151392c0c d73a289f6c6c95edec8612602667d758 { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor' } -C3L-04402.RNA-Seq.transcriptome.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 1944e5e3-662f-4a7e-aff1-953355ad15f3.rna_seq.transcriptome.gdc_realn.bam 7258219803 BAM transcriptome harmonized CPTAC3 e4698368-5335-4448-95c6-4501ca39dd4f b8ff8ca46d9b0010e5df97c255250389 { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor' } +C3L-04402.RNA-Seq.chimeric.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 8cb6435d-79c9-43d5-b5cc-56732413b2f1.rna_seq.chimeric.gdc_realn.bam 23110483 BAM chimeric harmonized CPTAC3 b236908f-e2ed-4c8b-9419-033c663636b7 1d11badf24e9ea8196151c7a5c1cba00 { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor' } +C3L-04402.RNA-Seq.genomic.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 8cb6435d-79c9-43d5-b5cc-56732413b2f1.rna_seq.genomic.gdc_realn.bam 6925117317 BAM genomic harmonized CPTAC3 cb99c1e6-b493-4b86-9437-a505e2257a6e bbd9592f7e32df81a673fafcffa9b9c6 { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor' } +C3L-04402.RNA-Seq.R1_L001.T C3L-04402 LSCC RNA-Seq tumor CPT0281060009 200428_UNC31-K00269_0276_BHH5TMBBXY_TAATACAG-ATATTCAC_S1_L001_R1_001.fastq.gz 3116262455 FASTQ R1_L001 unaligned CPTAC3 fd64d4c2-e55f-4b11-8b79-424993ec283f 21bae8de5a63f2c0343ea8e28bbe02ff { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04402.RNA-Seq.R2_L001.T C3L-04402 LSCC RNA-Seq tumor CPT0281060009 200428_UNC31-K00269_0276_BHH5TMBBXY_TAATACAG-ATATTCAC_S1_L001_R2_001.fastq.gz 3434270972 FASTQ R2_L001 unaligned CPTAC3 fcae66d9-1278-4d7a-85c1-0f8151392c0c d73a289f6c6c95edec8612602667d758 { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04402.RNA-Seq.transcriptome.T.hg38 C3L-04402 LSCC RNA-Seq tumor CPT0281060009 8cb6435d-79c9-43d5-b5cc-56732413b2f1.rna_seq.transcriptome.gdc_realn.bam 8163548253 BAM transcriptome harmonized CPTAC3 55ac2c0f-3163-4c64-abf5-dd8df3d6ff15 f4e1e9bc1363b964d81894c4e1be83a0 { 'aliquot_tag': 'ALQ_b53f2a4e', 'gdc_sample_type': 'Primary Tumor' } C3L-04402.WGS.N C3L-04402 LSCC WGS blood_normal CPT0285780002 CPT0285780002.WholeGenome.RP-2158.bam 26025114290 BAM aligned CPTAC3 c66365f5-f774-4440-ba53-b39f53e5c3d8 1ef42f8c7720279c1b156da9f75f6753 { 'aliquot_tag': 'ALQ_7497590c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04402.WGS.N.hg38 C3L-04402 LSCC WGS blood_normal CPT0285780002 4dc3a96a-b762-4a23-b6ba-38791790b86b_wgs_gdc_realn.bam 77030429119 BAM harmonized CPTAC3 8f8f6dc0-542c-4b18-8264-62c54578599c 1dfc7c33402d06d75cbc409986913874 { 'aliquot_tag': 'ALQ_7497590c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04402.WGS.T C3L-04402 LSCC WGS tumor CPT0281060006 CPT0281060006.WholeGenome.RP-2158.bam 19746056389 BAM aligned CPTAC3 7b403441-0fe4-430b-b00a-165209c8fdc5 0c4c2e8b819b3611f4d976d499e6b1ff { 'aliquot_tag': 'ALQ_258037df', 'gdc_sample_type': 'Primary Tumor' } @@ -15416,16 +16350,16 @@ C3L-04404.miRNA-Seq.A C3L-04404 LSCC miRNA-Seq tissue_normal CPT0284390009 20051 C3L-04404.miRNA-Seq.A.hg38 C3L-04404 LSCC miRNA-Seq tissue_normal CPT0284390009 e1dadd45-c572-4847-bf33-7d89c4d92356_mirnaseq_gdc_realn.bam 306891555 BAM harmonized CPTAC3 b5d0566e-17a1-44be-89a5-afe33cae417a e4a6bc514ce6f8744285f8699beef795 { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04404.miRNA-Seq.T C3L-04404 LSCC miRNA-Seq tumor CPT0284380009 200224_UNC31-K00269_0267_AHC722BBXY_GTGAAA_S19_L008_R1_001.unaln.bam 217957334 BAM unaligned CPTAC3 f3ce923d-8c3a-4106-9bf3-1a32327e686d 55c9fd4ff7a446847069fd4062f27084 { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor' } C3L-04404.miRNA-Seq.T.hg38 C3L-04404 LSCC miRNA-Seq tumor CPT0284380009 596d776a-ca00-4cf6-9539-1987a7c7f864_mirnaseq_gdc_realn.bam 246656063 BAM harmonized CPTAC3 ba61bc82-85be-4f45-993c-e4266919fd7a e1ba639929e5bd4997243fd68702aceb { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor' } -C3L-04404.RNA-Seq.chimeric.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 47ff7b1c-bb5d-4f2a-b451-6758634f4619.rna_seq.chimeric.gdc_realn.bam 31134876 BAM chimeric harmonized CPTAC3 ad553354-80ff-4a85-9f8f-60f06381b0d8 cff9890d012a819792355bba50c61640 { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04404.RNA-Seq.chimeric.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 7ea07075-6977-4606-8f30-17b69ece48cc.rna_seq.chimeric.gdc_realn.bam 41981189 BAM chimeric harmonized CPTAC3 5084c5cc-7837-4fe8-939d-3426bb6135ad cbbbc2d7f0dc2dc96c776de714bea73e { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor' } -C3L-04404.RNA-Seq.genomic.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 47ff7b1c-bb5d-4f2a-b451-6758634f4619.rna_seq.genomic.gdc_realn.bam 7775684477 BAM genomic harmonized CPTAC3 6201f989-cba3-48cb-9bed-e1dbabcb8f65 12043203430e057ea21289fcf5b8515b { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04404.RNA-Seq.genomic.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 7ea07075-6977-4606-8f30-17b69ece48cc.rna_seq.genomic.gdc_realn.bam 9324929695 BAM genomic harmonized CPTAC3 10c0a2ff-1c2e-46a9-943d-d2575327024b 846a840f0b54c72e6f3a3bfeea4a0f91 { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor' } -C3L-04404.RNA-Seq.R1_L001.T C3L-04404 LSCC RNA-Seq tumor CPT0284380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGTAAGT-ACTCTATG_S3_L001_R1_001.fastq.gz 4713549564 FASTQ R1_L001 unaligned CPTAC3 eed3326a-8be4-4296-98f0-d7478de78a84 c5a335f915aa9d80eab6ded19a6057c8 { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor' } -C3L-04404.RNA-Seq.R1_L006.A C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L006_R1_001.fastq.gz 3898324935 FASTQ R1_L006 unaligned CPTAC3 f077f27d-61bd-40e8-b4d4-996c9b7e63e7 fd2c7c2fb77e5c0285fe1e7867f4ce89 { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04404.RNA-Seq.R2_L001.T C3L-04404 LSCC RNA-Seq tumor CPT0284380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGTAAGT-ACTCTATG_S3_L001_R2_001.fastq.gz 5261756231 FASTQ R2_L001 unaligned CPTAC3 96ae514b-7148-41d6-8cff-f4586b0080e6 a3fd737b3b49c4eb80868801c3be9a1f { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor' } -C3L-04404.RNA-Seq.R2_L006.A C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L006_R2_001.fastq.gz 4164092950 FASTQ R2_L006 unaligned CPTAC3 b553992d-4327-4ea9-8af6-adb773e2eada d64877d0505d2b726eac1316770c1873 { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04404.RNA-Seq.transcriptome.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 47ff7b1c-bb5d-4f2a-b451-6758634f4619.rna_seq.transcriptome.gdc_realn.bam 8451158031 BAM transcriptome harmonized CPTAC3 3c549842-c398-4170-81c6-2e14c3dd9a88 407c75fb4839618c558fd97790c2d365 { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04404.RNA-Seq.transcriptome.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 7ea07075-6977-4606-8f30-17b69ece48cc.rna_seq.transcriptome.gdc_realn.bam 11170330624 BAM transcriptome harmonized CPTAC3 d668114e-c2aa-47ed-965d-6b0d08f01653 4181fb14fb1d689df201c3525015be64 { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor' } +C3L-04404.RNA-Seq.chimeric.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 912fe268-5cf9-45ba-a96d-c463f68ba24f.rna_seq.chimeric.gdc_realn.bam 31119970 BAM chimeric harmonized CPTAC3 51f1f16a-87aa-4172-8292-dbbdca90aa39 edcef70f9b58fcfa2f6ba616ba56dd2a { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04404.RNA-Seq.chimeric.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 8b9eb1ab-c727-4617-9ea7-def360a2658e.rna_seq.chimeric.gdc_realn.bam 41979576 BAM chimeric harmonized CPTAC3 efde4973-869b-454f-b69e-d3885e95c5fa ba40a07a63c9eb19d8e64d7fb144519d { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor' } +C3L-04404.RNA-Seq.genomic.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 912fe268-5cf9-45ba-a96d-c463f68ba24f.rna_seq.genomic.gdc_realn.bam 7777204571 BAM genomic harmonized CPTAC3 6fdaedfc-d26b-4086-ae3a-5502c6a84d5f 1163eb50efa5c1049c40094f783641a6 { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04404.RNA-Seq.genomic.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 8b9eb1ab-c727-4617-9ea7-def360a2658e.rna_seq.genomic.gdc_realn.bam 9326864117 BAM genomic harmonized CPTAC3 de5585ee-e7b3-4219-8ce3-7870b6842e00 8e2ddd5a975d0dd9b2ca6fc6310bf6f8 { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor' } +C3L-04404.RNA-Seq.R1_L001.T C3L-04404 LSCC RNA-Seq tumor CPT0284380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGTAAGT-ACTCTATG_S3_L001_R1_001.fastq.gz 4713549564 FASTQ R1_L001 unaligned CPTAC3 eed3326a-8be4-4296-98f0-d7478de78a84 c5a335f915aa9d80eab6ded19a6057c8 { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04404.RNA-Seq.R1_L006.A C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L006_R1_001.fastq.gz 3898324935 FASTQ R1_L006 unaligned CPTAC3 f077f27d-61bd-40e8-b4d4-996c9b7e63e7 fd2c7c2fb77e5c0285fe1e7867f4ce89 { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-04404.RNA-Seq.R2_L001.T C3L-04404 LSCC RNA-Seq tumor CPT0284380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGTAAGT-ACTCTATG_S3_L001_R2_001.fastq.gz 5261756231 FASTQ R2_L001 unaligned CPTAC3 96ae514b-7148-41d6-8cff-f4586b0080e6 a3fd737b3b49c4eb80868801c3be9a1f { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04404.RNA-Seq.R2_L006.A C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L006_R2_001.fastq.gz 4164092950 FASTQ R2_L006 unaligned CPTAC3 b553992d-4327-4ea9-8af6-adb773e2eada d64877d0505d2b726eac1316770c1873 { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-04404.RNA-Seq.transcriptome.A.hg38 C3L-04404 LSCC RNA-Seq tissue_normal CPT0284390009 912fe268-5cf9-45ba-a96d-c463f68ba24f.rna_seq.transcriptome.gdc_realn.bam 9602489321 BAM transcriptome harmonized CPTAC3 0570f15f-baca-42e9-be10-9113e17f5e4c 11d28a15e398b52fb9c48424c196955f { 'aliquot_tag': 'ALQ_e3c3e096', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04404.RNA-Seq.transcriptome.T.hg38 C3L-04404 LSCC RNA-Seq tumor CPT0284380009 8b9eb1ab-c727-4617-9ea7-def360a2658e.rna_seq.transcriptome.gdc_realn.bam 12638558456 BAM transcriptome harmonized CPTAC3 2e38b381-2c6d-4a1c-8135-4e1c40c45c8c 22e58a1017ac82415aa4886a3c20ba78 { 'aliquot_tag': 'ALQ_dea3c926', 'gdc_sample_type': 'Primary Tumor' } C3L-04404.WGS.N C3L-04404 LSCC WGS blood_normal CPT0285800002 CPT0285800002.WholeGenome.RP-2158.bam 29646130722 BAM aligned CPTAC3 1082fb0c-b52b-474f-ae57-cf48bb479ffa 1ed848562c50f1875488da3b488c2eec { 'aliquot_tag': 'ALQ_b5b1a018', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04404.WGS.N.hg38 C3L-04404 LSCC WGS blood_normal CPT0285800002 c2b9b16d-31c2-4824-bea8-127c4e3184ad_wgs_gdc_realn.bam 91194189527 BAM harmonized CPTAC3 f31033d4-9f98-4c28-abec-417846bf4ec5 6a8574cfd05ffbf686d704a63d575143 { 'aliquot_tag': 'ALQ_b5b1a018', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04404.WGS.T C3L-04404 LSCC WGS tumor CPT0284380006 CPT0284380006.WholeGenome.RP-2158.bam 24868549930 BAM aligned CPTAC3 9f5feb9e-9e84-49f0-9731-b1d495e8ebca 427ee249a2fb3d17b249b076b781329a { 'aliquot_tag': 'ALQ_4e1cd4b7', 'gdc_sample_type': 'Primary Tumor' } @@ -15444,16 +16378,16 @@ C3L-04408.miRNA-Seq.A C3L-04408 LSCC miRNA-Seq tissue_normal CPT0284610013 20051 C3L-04408.miRNA-Seq.A.hg38 C3L-04408 LSCC miRNA-Seq tissue_normal CPT0284610013 2598a129-cb28-4946-99e5-f59b8d080d3a_mirnaseq_gdc_realn.bam 221556584 BAM harmonized CPTAC3 90cee161-5d78-468a-86e3-2c2af8b4ab5d 272253272ba822f1a004281a5824905d { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04408.miRNA-Seq.T C3L-04408 LSCC miRNA-Seq tumor CPT0284600009 200224_UNC31-K00269_0267_AHC722BBXY_CATTTT_S35_L007_R1_001.unaln.bam 204358869 BAM unaligned CPTAC3 5fc43bad-07fa-4483-934e-9906d0665f66 88d2143a56e32ae466d98d50fa94ab08 { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor' } C3L-04408.miRNA-Seq.T.hg38 C3L-04408 LSCC miRNA-Seq tumor CPT0284600009 15c01b50-ce5d-4315-9a86-3884f964d2eb_mirnaseq_gdc_realn.bam 226520036 BAM harmonized CPTAC3 c9f6b212-902c-4e50-8e9f-b0d80d6cdb9e b24071f2dba06a1ac4ec42c599204554 { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor' } -C3L-04408.RNA-Seq.chimeric.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 ccd4776f-8225-485b-b828-e36ff2ed2fe3.rna_seq.chimeric.gdc_realn.bam 71289973 BAM chimeric harmonized CPTAC3 d5b1e73b-92a7-4480-9aa0-87f31adbdd76 e60433ca365e7f1eeb784847991383a3 { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04408.RNA-Seq.chimeric.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 d81c73c4-81de-45dd-aa1c-6fa196ee73ec.rna_seq.chimeric.gdc_realn.bam 26032569 BAM chimeric harmonized CPTAC3 f91b3fd9-3c5d-48be-97d0-7313d922637e 0b68f730d01b8a7568b1e96dea4c42ea { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor' } -C3L-04408.RNA-Seq.genomic.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 ccd4776f-8225-485b-b828-e36ff2ed2fe3.rna_seq.genomic.gdc_realn.bam 7225039239 BAM genomic harmonized CPTAC3 f7017713-4162-4076-9961-dc894223cd90 744ac097e24ef84e28b025760f8aaeb6 { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04408.RNA-Seq.genomic.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 d81c73c4-81de-45dd-aa1c-6fa196ee73ec.rna_seq.genomic.gdc_realn.bam 7044625464 BAM genomic harmonized CPTAC3 6f255153-72aa-4e9d-8e7d-2470c4804a7e dfa873596b752e33f9520c382acad9a3 { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor' } -C3L-04408.RNA-Seq.R1_L001.T C3L-04408 LSCC RNA-Seq tumor CPT0284600009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCCTCAT-AGTAGAGA_S3_L001_R1_001.fastq.gz 3126891913 FASTQ R1_L001 unaligned CPTAC3 6db37f19-2cf1-4804-9ea9-3755f15d45c6 c4e275678dd1b8b9934ae8d300c5b88f { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor' } -C3L-04408.RNA-Seq.R1_L006.A C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 200505_UNC31-K00269_0277_AHGFKNBBXY_GCCACAGG-CATGCCAT_S23_L006_R1_001.fastq.gz 3367240024 FASTQ R1_L006 unaligned CPTAC3 fe4116e1-39c9-4eda-a971-88e61d168499 5e549fbc508b5a666fed6896bfda77ce { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04408.RNA-Seq.R2_L001.T C3L-04408 LSCC RNA-Seq tumor CPT0284600009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCCTCAT-AGTAGAGA_S3_L001_R2_001.fastq.gz 3477799413 FASTQ R2_L001 unaligned CPTAC3 b79cba98-e659-47ce-b313-15389cf4dea3 e0117ef134b776be3f2626a1ac852bb7 { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor' } -C3L-04408.RNA-Seq.R2_L006.A C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 200505_UNC31-K00269_0277_AHGFKNBBXY_GCCACAGG-CATGCCAT_S23_L006_R2_001.fastq.gz 3838125023 FASTQ R2_L006 unaligned CPTAC3 8834d01d-64c6-41be-ab13-f3228b045b9b cb56511816ab86afa60ffc509688427e { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04408.RNA-Seq.transcriptome.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 ccd4776f-8225-485b-b828-e36ff2ed2fe3.rna_seq.transcriptome.gdc_realn.bam 7630991164 BAM transcriptome harmonized CPTAC3 ea730068-9df4-419d-8178-db3276e5ca65 6e351c3a3a55ecdbf5fa37f8bf6f283c { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04408.RNA-Seq.transcriptome.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 d81c73c4-81de-45dd-aa1c-6fa196ee73ec.rna_seq.transcriptome.gdc_realn.bam 7553123876 BAM transcriptome harmonized CPTAC3 8a2a9ce9-c796-4566-849e-91ddd4f76af5 b8958c2bcbb343cdc98890ad594b483b { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor' } +C3L-04408.RNA-Seq.chimeric.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 b52c7341-fa5e-4ad4-961e-47b610e94cd2.rna_seq.chimeric.gdc_realn.bam 71272688 BAM chimeric harmonized CPTAC3 619d7232-6cc8-4f6f-a1d2-40a771bfb5b7 1b2a644c1e5fd0ec4bf67288b2995f37 { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04408.RNA-Seq.chimeric.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 55f8bfdf-7107-4ba6-a42d-f874b62c7df1.rna_seq.chimeric.gdc_realn.bam 26026707 BAM chimeric harmonized CPTAC3 22f39a83-9b14-463e-9463-c6dc8e11a7b7 01271b48cff523bb0366dd9179377158 { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor' } +C3L-04408.RNA-Seq.genomic.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 b52c7341-fa5e-4ad4-961e-47b610e94cd2.rna_seq.genomic.gdc_realn.bam 7226299403 BAM genomic harmonized CPTAC3 cce83df8-f247-402c-b39d-4fad49fd9fa8 09d64f9a538f1baf8ab14ea60a2d27e3 { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04408.RNA-Seq.genomic.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 55f8bfdf-7107-4ba6-a42d-f874b62c7df1.rna_seq.genomic.gdc_realn.bam 7046476254 BAM genomic harmonized CPTAC3 cf410b2a-c419-40d2-aeda-e0785b05e32a ef6a94b3ea4bb4c411507b423acfd06d { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor' } +C3L-04408.RNA-Seq.R1_L001.T C3L-04408 LSCC RNA-Seq tumor CPT0284600009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCCTCAT-AGTAGAGA_S3_L001_R1_001.fastq.gz 3126891913 FASTQ R1_L001 unaligned CPTAC3 6db37f19-2cf1-4804-9ea9-3755f15d45c6 c4e275678dd1b8b9934ae8d300c5b88f { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04408.RNA-Seq.R1_L006.A C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 200505_UNC31-K00269_0277_AHGFKNBBXY_GCCACAGG-CATGCCAT_S23_L006_R1_001.fastq.gz 3367240024 FASTQ R1_L006 unaligned CPTAC3 fe4116e1-39c9-4eda-a971-88e61d168499 5e549fbc508b5a666fed6896bfda77ce { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-04408.RNA-Seq.R2_L001.T C3L-04408 LSCC RNA-Seq tumor CPT0284600009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCCTCAT-AGTAGAGA_S3_L001_R2_001.fastq.gz 3477799413 FASTQ R2_L001 unaligned CPTAC3 b79cba98-e659-47ce-b313-15389cf4dea3 e0117ef134b776be3f2626a1ac852bb7 { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04408.RNA-Seq.R2_L006.A C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 200505_UNC31-K00269_0277_AHGFKNBBXY_GCCACAGG-CATGCCAT_S23_L006_R2_001.fastq.gz 3838125023 FASTQ R2_L006 unaligned CPTAC3 8834d01d-64c6-41be-ab13-f3228b045b9b cb56511816ab86afa60ffc509688427e { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-04408.RNA-Seq.transcriptome.A.hg38 C3L-04408 LSCC RNA-Seq tissue_normal CPT0284610013 b52c7341-fa5e-4ad4-961e-47b610e94cd2.rna_seq.transcriptome.gdc_realn.bam 8655801560 BAM transcriptome harmonized CPTAC3 f08c7c2e-5994-4b09-ac06-967cb8e65fc1 e61074173b233ff53de608e4c51975ac { 'aliquot_tag': 'ALQ_7ab0e2bb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04408.RNA-Seq.transcriptome.T.hg38 C3L-04408 LSCC RNA-Seq tumor CPT0284600009 55f8bfdf-7107-4ba6-a42d-f874b62c7df1.rna_seq.transcriptome.gdc_realn.bam 8568964253 BAM transcriptome harmonized CPTAC3 6b0f4c57-3c21-4b4f-ad07-2b6be55b5994 0b05df38986d0ba8783001afe0faa57c { 'aliquot_tag': 'ALQ_be1e1354', 'gdc_sample_type': 'Primary Tumor' } C3L-04408.WGS.N C3L-04408 LSCC WGS blood_normal CPT0285820002 CPT0285820002.WholeGenome.RP-2158.bam 26047707163 BAM aligned CPTAC3 6915800c-5570-4161-8495-4176e117d84f a1135bd38b44c234c49e4ffd8e7b35c7 { 'aliquot_tag': 'ALQ_cf71f378', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04408.WGS.N.hg38 C3L-04408 LSCC WGS blood_normal CPT0285820002 f74707b1-70dd-42ca-90f2-acae0b761eed_wgs_gdc_realn.bam 77045791474 BAM harmonized CPTAC3 ab0d9bba-a79f-42d5-b891-fd83ea48ee87 89338fc379d07770615e7484f362b491 { 'aliquot_tag': 'ALQ_cf71f378', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04408.WGS.T C3L-04408 LSCC WGS tumor CPT0284600006 CPT0284600006.WholeGenome.RP-2158.bam 22001221086 BAM aligned CPTAC3 6ba01002-54df-43c3-a1bd-d10bea94292f 1fa6bac07c74cdfc7ea71117b408b11d { 'aliquot_tag': 'ALQ_2ea10ec5', 'gdc_sample_type': 'Primary Tumor' } @@ -15470,11 +16404,11 @@ C3L-04409.MethArray.Red.A C3L-04409 LSCC Methylation Array tissue_normal CPT0284 C3L-04409.MethArray.Red.T C3L-04409 LSCC Methylation Array tumor CPT0284320006 204372030022_R03C01_Red.idat 13677905 IDAT Red NA CPTAC3 9320403e-fdd2-4ac8-9b9f-d9407fc414d5 07965e01f9f9bf12de42bd2d55aa9409 { 'aliquot_tag': 'ALQ_4accc16', 'gdc_sample_type': 'Primary Tumor' } C3L-04409.miRNA-Seq.T C3L-04409 LSCC miRNA-Seq tumor CPT0284320009 200224_UNC31-K00269_0267_AHC722BBXY_GTCCGC_S18_L008_R1_001.unaln.bam 223684758 BAM unaligned CPTAC3 89417943-a8b8-4561-a068-a52fb830a4d3 0c623dba5577e0b0339a3b34dc106989 { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor' } C3L-04409.miRNA-Seq.T.hg38 C3L-04409 LSCC miRNA-Seq tumor CPT0284320009 b5e7d0a7-3e64-4f63-bbf3-3dc5eb2dce2e_mirnaseq_gdc_realn.bam 249007952 BAM harmonized CPTAC3 0560f4e7-9dfa-4ae1-8bcf-90b51101f9e8 652df742b63cc40a317a67099e1a8d20 { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor' } -C3L-04409.RNA-Seq.chimeric.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 1446fc16-fd16-4e40-9e65-c79c5cb4c3dd.rna_seq.chimeric.gdc_realn.bam 34470528 BAM chimeric harmonized CPTAC3 45c3ba3b-64f8-40d2-898b-683ee091a68e b71594fa5304d627f47b3aeba24fc7fc { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor' } -C3L-04409.RNA-Seq.genomic.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 1446fc16-fd16-4e40-9e65-c79c5cb4c3dd.rna_seq.genomic.gdc_realn.bam 8376023565 BAM genomic harmonized CPTAC3 9145b2eb-4cb1-47b7-907d-9c7509aca9c2 fd88a09d8e6a82025c2bd3dab615190c { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor' } -C3L-04409.RNA-Seq.R1_L001.T C3L-04409 LSCC RNA-Seq tumor CPT0284320009 200428_UNC31-K00269_0276_BHH5TMBBXY_CGGCGTGA-GCGCCTGT_S2_L001_R1_001.fastq.gz 3768250785 FASTQ R1_L001 unaligned CPTAC3 3cdd6265-3ac5-47f8-b323-dc6bb6b12930 a65a40a7160f2eba343bb74a6482a0f4 { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor' } -C3L-04409.RNA-Seq.R2_L001.T C3L-04409 LSCC RNA-Seq tumor CPT0284320009 200428_UNC31-K00269_0276_BHH5TMBBXY_CGGCGTGA-GCGCCTGT_S2_L001_R2_001.fastq.gz 4267899311 FASTQ R2_L001 unaligned CPTAC3 17b4edc1-eb6b-459d-8bbb-0763f336df32 42ac9f35bb977b5f146678cc3ac4d7b6 { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor' } -C3L-04409.RNA-Seq.transcriptome.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 1446fc16-fd16-4e40-9e65-c79c5cb4c3dd.rna_seq.transcriptome.gdc_realn.bam 8478221248 BAM transcriptome harmonized CPTAC3 b6c69cfd-34d5-47d1-906a-47ccb9a9fc38 fc665b560b68f79a4da24790b3abd42b { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor' } +C3L-04409.RNA-Seq.chimeric.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 3478b2e1-cc3e-4e83-9548-e89fc27e372c.rna_seq.chimeric.gdc_realn.bam 34456460 BAM chimeric harmonized CPTAC3 1b6d9cd1-a433-4262-b54c-06e70d545433 b3bbde5163783040469690e4dbb5ad90 { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor' } +C3L-04409.RNA-Seq.genomic.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 3478b2e1-cc3e-4e83-9548-e89fc27e372c.rna_seq.genomic.gdc_realn.bam 8377548131 BAM genomic harmonized CPTAC3 1e0939aa-ab8e-4633-a78f-f82fbb7cfc47 176cc0dad305611a6d80eee41f5e3582 { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor' } +C3L-04409.RNA-Seq.R1_L001.T C3L-04409 LSCC RNA-Seq tumor CPT0284320009 200428_UNC31-K00269_0276_BHH5TMBBXY_CGGCGTGA-GCGCCTGT_S2_L001_R1_001.fastq.gz 3768250785 FASTQ R1_L001 unaligned CPTAC3 3cdd6265-3ac5-47f8-b323-dc6bb6b12930 a65a40a7160f2eba343bb74a6482a0f4 { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04409.RNA-Seq.R2_L001.T C3L-04409 LSCC RNA-Seq tumor CPT0284320009 200428_UNC31-K00269_0276_BHH5TMBBXY_CGGCGTGA-GCGCCTGT_S2_L001_R2_001.fastq.gz 4267899311 FASTQ R2_L001 unaligned CPTAC3 17b4edc1-eb6b-459d-8bbb-0763f336df32 42ac9f35bb977b5f146678cc3ac4d7b6 { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04409.RNA-Seq.transcriptome.T.hg38 C3L-04409 LSCC RNA-Seq tumor CPT0284320009 3478b2e1-cc3e-4e83-9548-e89fc27e372c.rna_seq.transcriptome.gdc_realn.bam 9615160014 BAM transcriptome harmonized CPTAC3 28bffd85-9a2b-4d3b-97a0-9560eccedf7b f02d420e2be698aac7e5af969f172ab2 { 'aliquot_tag': 'ALQ_9413d187', 'gdc_sample_type': 'Primary Tumor' } C3L-04409.WGS.N C3L-04409 LSCC WGS blood_normal CPT0285790002 CPT0285790002.WholeGenome.RP-2158.bam 29506415090 BAM aligned CPTAC3 bfceb32c-10f6-4bd6-b8f3-b6bcddc36f98 2cbc1361be27b884822fd70931e14550 { 'aliquot_tag': 'ALQ_49f770bc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04409.WGS.N.hg38 C3L-04409 LSCC WGS blood_normal CPT0285790002 0cbade83-4b62-4a62-8cff-6a43e26ec405_wgs_gdc_realn.bam 87643866032 BAM harmonized CPTAC3 fca9b34d-230b-4cea-8541-c74075b3c378 97842bd950844a855c8065db21e1f37b { 'aliquot_tag': 'ALQ_49f770bc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04409.WGS.T C3L-04409 LSCC WGS tumor CPT0284320006 CPT0284320006.WholeGenome.RP-2158.bam 23961113305 BAM aligned CPTAC3 b524a883-8206-4bf5-a4c6-b7b2a25771b6 0c519ec227c50c1b02154744d42df297 { 'aliquot_tag': 'ALQ_4accc16', 'gdc_sample_type': 'Primary Tumor' } @@ -15493,16 +16427,16 @@ C3L-04410.miRNA-Seq.A C3L-04410 LSCC miRNA-Seq tissue_normal CPT0284490009 20051 C3L-04410.miRNA-Seq.A.hg38 C3L-04410 LSCC miRNA-Seq tissue_normal CPT0284490009 370bc377-8746-4164-b503-d16f12ba80ad_mirnaseq_gdc_realn.bam 334311950 BAM harmonized CPTAC3 4ba98c9a-6d26-4478-91fc-d357877ef08b f8c990779599816e9bb129a27725d467 { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04410.miRNA-Seq.T C3L-04410 LSCC miRNA-Seq tumor CPT0284470009 200224_UNC31-K00269_0267_AHC722BBXY_GTGGCC_S20_L008_R1_001.unaln.bam 245614612 BAM unaligned CPTAC3 022be749-6937-4adb-932c-93ee22c63721 81a317f3547d8e648b78361e648c6fe9 { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor' } C3L-04410.miRNA-Seq.T.hg38 C3L-04410 LSCC miRNA-Seq tumor CPT0284470009 139d98af-0cae-4e91-be1a-8a838ea630ba_mirnaseq_gdc_realn.bam 270871650 BAM harmonized CPTAC3 1247e480-aca8-4f5c-8ea6-ff2e3cef4d41 1c61974be74cf1a6bebca097aa9b9221 { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04410.RNA-Seq.chimeric.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 687e3ef4-e6af-44b5-88fa-505f278cff6b.rna_seq.chimeric.gdc_realn.bam 29105640 BAM chimeric harmonized CPTAC3 27b0c158-1a02-496a-8552-3ac4cc89143a 80646a3301ffb798c82946078e9e809a { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04410.RNA-Seq.chimeric.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 515d9963-f742-4efb-b80d-7f363fd85c4d.rna_seq.chimeric.gdc_realn.bam 29949077 BAM chimeric harmonized CPTAC3 b60ca2da-72d3-4965-be71-5981f06b478a 09303aa9c89a115fed40e8ddf1752c44 { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04410.RNA-Seq.genomic.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 687e3ef4-e6af-44b5-88fa-505f278cff6b.rna_seq.genomic.gdc_realn.bam 7631427489 BAM genomic harmonized CPTAC3 e1f1ad01-39dd-40cb-bbd9-435a466e5cbf ea82ca5676bcd5f0298f0bcff719d05e { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04410.RNA-Seq.genomic.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 515d9963-f742-4efb-b80d-7f363fd85c4d.rna_seq.genomic.gdc_realn.bam 8058905382 BAM genomic harmonized CPTAC3 8d237534-17ec-49db-b645-11baccf55ee6 4d31742418667e841e3a496997a9b5fd { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04410.RNA-Seq.R1_L001.T C3L-04410 LSCC RNA-Seq tumor CPT0284470009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCACGGAC-GTCTCGCA_S4_L001_R1_001.fastq.gz 3847762279 FASTQ R1_L001 unaligned CPTAC3 5c562fe8-ab90-4894-a916-70639384266b 7ada3faf3d252e39c8c509eff8442cc5 { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04410.RNA-Seq.R1_L006.A C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L006_R1_001.fastq.gz 3910935753 FASTQ R1_L006 unaligned CPTAC3 19640734-3489-487d-83cd-b266bb249147 85a10421c1219b940fef76de4516f8a8 { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04410.RNA-Seq.R2_L001.T C3L-04410 LSCC RNA-Seq tumor CPT0284470009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCACGGAC-GTCTCGCA_S4_L001_R2_001.fastq.gz 4322814786 FASTQ R2_L001 unaligned CPTAC3 b1563fb9-5b45-412d-aa9d-f8bdae672abe 9dd7d68f638a79008eb8e080c7ed16bd { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04410.RNA-Seq.R2_L006.A C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L006_R2_001.fastq.gz 4194200637 FASTQ R2_L006 unaligned CPTAC3 e482f4fd-5cca-4c2a-828f-c154e9f64c4a 5a52f7f9b313f8415188dd3f4f131a59 { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04410.RNA-Seq.transcriptome.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 687e3ef4-e6af-44b5-88fa-505f278cff6b.rna_seq.transcriptome.gdc_realn.bam 9275627465 BAM transcriptome harmonized CPTAC3 a0a2e8d5-d4ef-4b76-93f7-76a61d2ffed8 52768c4821e3f3b8357ea0e30cf58d96 { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04410.RNA-Seq.transcriptome.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 515d9963-f742-4efb-b80d-7f363fd85c4d.rna_seq.transcriptome.gdc_realn.bam 9056381587 BAM transcriptome harmonized CPTAC3 c6cbe03d-3aa9-4439-b7c5-57a55a74cdca 817ce5d9fcce0bd5e62bb2f130cda0cf { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04410.RNA-Seq.chimeric.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 f57ee923-2cdb-4344-848d-eb988d5aaeae.rna_seq.chimeric.gdc_realn.bam 29096056 BAM chimeric harmonized CPTAC3 8b1b92a7-fdee-4bd9-a960-854bce4672a9 674f12e466d0dccc73d7250f039727ad { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04410.RNA-Seq.chimeric.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 0ca63ec2-313d-4b46-92f0-291cd6ff5612.rna_seq.chimeric.gdc_realn.bam 29950070 BAM chimeric harmonized CPTAC3 e59b0a99-0fce-40fd-adcd-95d2c79e1bf2 be8bf4802ef450ab0fdd1ae33f11ca5d { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04410.RNA-Seq.genomic.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 f57ee923-2cdb-4344-848d-eb988d5aaeae.rna_seq.genomic.gdc_realn.bam 7632568158 BAM genomic harmonized CPTAC3 4c03ff67-8bfc-46d8-a8b2-fce20f0bd5c8 4c2036d4b4eb48e8bc5859870d20137a { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04410.RNA-Seq.genomic.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 0ca63ec2-313d-4b46-92f0-291cd6ff5612.rna_seq.genomic.gdc_realn.bam 8061463669 BAM genomic harmonized CPTAC3 5ff1fddc-004b-4160-9448-f359b91d97eb 426aeca5995775b0662e9d4eab80f1df { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04410.RNA-Seq.R1_L001.T C3L-04410 LSCC RNA-Seq tumor CPT0284470009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCACGGAC-GTCTCGCA_S4_L001_R1_001.fastq.gz 3847762279 FASTQ R1_L001 unaligned CPTAC3 5c562fe8-ab90-4894-a916-70639384266b 7ada3faf3d252e39c8c509eff8442cc5 { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04410.RNA-Seq.R1_L006.A C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L006_R1_001.fastq.gz 3910935753 FASTQ R1_L006 unaligned CPTAC3 19640734-3489-487d-83cd-b266bb249147 85a10421c1219b940fef76de4516f8a8 { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-04410.RNA-Seq.R2_L001.T C3L-04410 LSCC RNA-Seq tumor CPT0284470009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCACGGAC-GTCTCGCA_S4_L001_R2_001.fastq.gz 4322814786 FASTQ R2_L001 unaligned CPTAC3 b1563fb9-5b45-412d-aa9d-f8bdae672abe 9dd7d68f638a79008eb8e080c7ed16bd { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04410.RNA-Seq.R2_L006.A C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L006_R2_001.fastq.gz 4194200637 FASTQ R2_L006 unaligned CPTAC3 e482f4fd-5cca-4c2a-828f-c154e9f64c4a 5a52f7f9b313f8415188dd3f4f131a59 { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-04410.RNA-Seq.transcriptome.A.hg38 C3L-04410 LSCC RNA-Seq tissue_normal CPT0284490009 f57ee923-2cdb-4344-848d-eb988d5aaeae.rna_seq.transcriptome.gdc_realn.bam 10544509433 BAM transcriptome harmonized CPTAC3 854bef7f-9782-462f-a065-4f0f67d91902 7101bfebdb716194fe7327375bd2fc6d { 'aliquot_tag': 'ALQ_fec6d02e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04410.RNA-Seq.transcriptome.T.hg38 C3L-04410 LSCC RNA-Seq tumor CPT0284470009 0ca63ec2-313d-4b46-92f0-291cd6ff5612.rna_seq.transcriptome.gdc_realn.bam 10169294799 BAM transcriptome harmonized CPTAC3 78896108-3ad4-4417-ae1b-197210b518f3 a23ee878cad786ea191934571b068f54 { 'aliquot_tag': 'ALQ_41f66e4f', 'gdc_sample_type': 'Primary Tumor' } C3L-04410.WGS.N C3L-04410 LSCC WGS blood_normal CPT0285830002 CPT0285830002.WholeGenome.RP-2158.bam 24297696890 BAM aligned CPTAC3 9bec8282-6380-41e9-922e-2c466b1d59a5 89cecf569115fae9399d1612fe0272ec { 'aliquot_tag': 'ALQ_f211dac8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04410.WGS.N.hg38 C3L-04410 LSCC WGS blood_normal CPT0285830002 ddaede42-d686-4b86-8706-ec0d5aa1165d_wgs_gdc_realn.bam 74503866000 BAM harmonized CPTAC3 51138aec-609f-4285-95d2-8d47f3b7b906 cd3dc6abe7a440f0d6ee338beebacfca { 'aliquot_tag': 'ALQ_f211dac8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04410.WGS.T C3L-04410 LSCC WGS tumor CPT0284470006 CPT0284470006.WholeGenome.RP-2158.bam 23081113790 BAM aligned CPTAC3 4ca863a2-d2c0-4a73-b135-ba3674283585 0cef71fb0108b898e07a3b44fcf1e4a7 { 'aliquot_tag': 'ALQ_d14973de', 'gdc_sample_type': 'Primary Tumor' } @@ -15518,9 +16452,9 @@ C3L-04473.MethArray.Red.T C3L-04473 PDA Methylation Array tumor CPT0238710007 20 C3L-04473.miRNA-Seq.T C3L-04473 PDA miRNA-Seq tumor CPT0238710010 190712_UNC32-K00270_0192_BH7HL3BBXY_GTGGCC_S43_L005_R1_001.unaln.bam 188659787 BAM unaligned CPTAC3 049db0b3-c57d-4212-bf6e-958143c523d3 9367a576d8f4e9f8d9218f951f47a165 { 'aliquot_tag': 'ALQ_b22f1686', 'gdc_sample_type': 'Primary Tumor' } C3L-04473.miRNA-Seq.T.hg38 C3L-04473 PDA miRNA-Seq tumor CPT0238710010 971bafab-60f2-47d6-b67c-2ccbe8b85d9e_mirnaseq_gdc_realn.bam 214125282 BAM harmonized CPTAC3 42804d2e-1761-4fa6-a0e2-8f66ee8d2625 0fe0bbc4007905531b6cf7d30ac8e00c { 'aliquot_tag': 'ALQ_b22f1686', 'gdc_sample_type': 'Primary Tumor' } C3L-04473.RNA-Seq.chimeric.T.hg38 C3L-04473 PDA RNA-Seq tumor CPT0238710010 592160ba-db82-4ab3-b194-2728d7b3bee4.rna_seq.chimeric.gdc_realn.bam 31856615 BAM chimeric harmonized CPTAC3 08a4dcb2-7514-42a9-b214-43f707107338 dd6f0c3b9ad9ab15e8e3bde8b0614007 { 'aliquot_tag': 'ALQ_b22f1686', 'gdc_sample_type': 'Primary Tumor' } -C3L-04473.RNA-Seq.genomic.T.hg38 C3L-04473 PDA RNA-Seq tumor CPT0238710010 592160ba-db82-4ab3-b194-2728d7b3bee4.rna_seq.genomic.gdc_realn.bam 7728975687 BAM genomic harmonized CPTAC3 fb755ad8-2be6-4839-a679-763f39c15e5e 7cf11bca9b59d5826ef6611ca6b70a9b { 'aliquot_tag': 'ALQ_b22f1686', 'gdc_sample_type': 'Primary Tumor' } -C3L-04473.RNA-Seq.R1_L004.T C3L-04473 PDA RNA-Seq tumor CPT0238710010 190621_UNC32-K00270_0185_BH7G72BBXY_CCTTCACC-GACGCTCC_S15_L004_R1_001.fastq.gz 3636785373 FASTQ R1_L004 unaligned CPTAC3 9f4306d1-39ce-420f-82b3-c7032d285625 b2489131a9f67719b2b320f0435f95e2 { 'aliquot_tag': 'ALQ_b22f1686', 'gdc_sample_type': 'Primary Tumor' } -C3L-04473.RNA-Seq.R2_L004.T C3L-04473 PDA RNA-Seq tumor CPT0238710010 190621_UNC32-K00270_0185_BH7G72BBXY_CCTTCACC-GACGCTCC_S15_L004_R2_001.fastq.gz 3934885118 FASTQ R2_L004 unaligned CPTAC3 a4cc8660-e78b-4c32-ac99-6cc2baa67b6d e5ca33a8ccc869bb51ec3924965a2f9f { 'aliquot_tag': 'ALQ_b22f1686', 'gdc_sample_type': 'Primary Tumor' } +C3L-04473.RNA-Seq.genomic.T.hg38 C3L-04473 PDA RNA-Seq tumor CPT0238710010 592160ba-db82-4ab3-b194-2728d7b3bee4.rna_seq.genomic.gdc_realn.bam 7728975687 BAM genomic harmonized CPTAC3 31df5983-cc2a-46a1-aa6c-53a330985c3b 7cf11bca9b59d5826ef6611ca6b70a9b { 'aliquot_tag': 'ALQ_b22f1686', 'gdc_sample_type': 'Primary Tumor' } +C3L-04473.RNA-Seq.R1_L004.T C3L-04473 PDA RNA-Seq tumor CPT0238710010 190621_UNC32-K00270_0185_BH7G72BBXY_CCTTCACC-GACGCTCC_S15_L004_R1_001.fastq.gz 3636785373 FASTQ R1_L004 unaligned CPTAC3 9f4306d1-39ce-420f-82b3-c7032d285625 b2489131a9f67719b2b320f0435f95e2 { 'aliquot_tag': 'ALQ_b22f1686', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04473.RNA-Seq.R2_L004.T C3L-04473 PDA RNA-Seq tumor CPT0238710010 190621_UNC32-K00270_0185_BH7G72BBXY_CCTTCACC-GACGCTCC_S15_L004_R2_001.fastq.gz 3934885118 FASTQ R2_L004 unaligned CPTAC3 a4cc8660-e78b-4c32-ac99-6cc2baa67b6d e5ca33a8ccc869bb51ec3924965a2f9f { 'aliquot_tag': 'ALQ_b22f1686', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-04473.RNA-Seq.transcriptome.T.hg38 C3L-04473 PDA RNA-Seq tumor CPT0238710010 592160ba-db82-4ab3-b194-2728d7b3bee4.rna_seq.transcriptome.gdc_realn.bam 9806096797 BAM transcriptome harmonized CPTAC3 ea34b8d7-c055-48b1-b6cd-96f83f6f001a bf8824510e3be1803ac4cc4133001342 { 'aliquot_tag': 'ALQ_b22f1686', 'gdc_sample_type': 'Primary Tumor' } C3L-04473.Targeted.T C3L-04473 PDA Targeted Sequencing tumor CPT0238710007 CPT0238710007.CustomSelection.RP-1303.PDO-18786.bam 5077344682 BAM aligned CPTAC3 c3c6b717-5346-43c1-a3f2-fcf963573244 1317744946c8aaca99a62341014ca288 { 'aliquot_tag': 'ALQ_3550b264', 'gdc_sample_type': 'Primary Tumor' } C3L-04473.Targeted.T.hg38 C3L-04473 PDA Targeted Sequencing tumor CPT0238710007 3fd5c3cb-602b-45a6-af9d-08dbd550b3ed_targetedsequencing_gdc_realn.bam 7033845839 BAM harmonized CPTAC3 fd8e0d5c-cd3c-4a7e-a030-2937c386b81e ef7ad57cb57271de28d648ff8d86226e { 'aliquot_tag': 'ALQ_3550b264', 'gdc_sample_type': 'Primary Tumor' } @@ -15542,12 +16476,12 @@ C3L-04475.miRNA-Seq.T C3L-04475 PDA miRNA-Seq tumor CPT0238820011 190712_UNC32-K C3L-04475.miRNA-Seq.T.hg38 C3L-04475 PDA miRNA-Seq tumor CPT0238820011 6a3a5e69-3b24-439e-9603-c0e24c7736ea_mirnaseq_gdc_realn.bam 248005318 BAM harmonized CPTAC3 7781ac53-e536-457e-9955-6d428ee7c487 a589d053033038d9c4ba3b171d026011 { 'aliquot_tag': 'ALQ_73deee15', 'gdc_sample_type': 'Primary Tumor' } C3L-04475.RNA-Seq.chimeric.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 70bfb00d-4b93-42f1-b297-893549d347c8.rna_seq.chimeric.gdc_realn.bam 40259738 BAM chimeric harmonized CPTAC3 63afd3d7-b70f-417a-a893-0ed7177b18fe 93c8f5bc9f73416834741958d55430d2 { 'aliquot_tag': 'ALQ_41caebc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04475.RNA-Seq.chimeric.T.hg38 C3L-04475 PDA RNA-Seq tumor CPT0238820011 367dcf06-7a92-4d68-890a-f187ebab59f9.rna_seq.chimeric.gdc_realn.bam 33106792 BAM chimeric harmonized CPTAC3 f1d8c638-c538-4de9-98ea-08a66b35bab0 a7856e22a38d0d641335aee3d1c8c657 { 'aliquot_tag': 'ALQ_73deee15', 'gdc_sample_type': 'Primary Tumor' } -C3L-04475.RNA-Seq.genomic.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 70bfb00d-4b93-42f1-b297-893549d347c8.rna_seq.genomic.gdc_realn.bam 8393458748 BAM genomic harmonized CPTAC3 f8b44552-6554-488b-a4dc-5426b22d9a13 95ef814ffe3604341fd01d32ddee7d02 { 'aliquot_tag': 'ALQ_41caebc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04475.RNA-Seq.genomic.T.hg38 C3L-04475 PDA RNA-Seq tumor CPT0238820011 367dcf06-7a92-4d68-890a-f187ebab59f9.rna_seq.genomic.gdc_realn.bam 7746588670 BAM genomic harmonized CPTAC3 ae7aedcd-25c1-43d7-bb80-cbf79aaecb02 d71d4a066739a2813cdf37647b376797 { 'aliquot_tag': 'ALQ_73deee15', 'gdc_sample_type': 'Primary Tumor' } -C3L-04475.RNA-Seq.R1_L004.A C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 190702_UNC32-K00270_0188_BH7CLJBBXY_TACCGAGG-CCTGAACT_S14_L004_R1_001.fastq.gz 3778418614 FASTQ R1_L004 unaligned CPTAC3 a8a064eb-7b13-4787-a851-54149dc5efc1 0a5f9bb893b7398c02f3a15da126eddc { 'aliquot_tag': 'ALQ_41caebc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04475.RNA-Seq.R1_L004.T C3L-04475 PDA RNA-Seq tumor CPT0238820011 190621_UNC32-K00270_0185_BH7G72BBXY_GCCACAGG-CATGCCAT_S14_L004_R1_001.fastq.gz 3522404258 FASTQ R1_L004 unaligned CPTAC3 30d19a9a-ea38-4aef-bb05-c5b0f3a039ac c1dc9e8706c9013b9e6e3f12c09ade70 { 'aliquot_tag': 'ALQ_73deee15', 'gdc_sample_type': 'Primary Tumor' } -C3L-04475.RNA-Seq.R2_L004.A C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 190702_UNC32-K00270_0188_BH7CLJBBXY_TACCGAGG-CCTGAACT_S14_L004_R2_001.fastq.gz 4408642109 FASTQ R2_L004 unaligned CPTAC3 33d050c4-19aa-41c1-b3bf-4621fb774485 c1ac4ac1cf6353bc9542da94987a5dcd { 'aliquot_tag': 'ALQ_41caebc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04475.RNA-Seq.R2_L004.T C3L-04475 PDA RNA-Seq tumor CPT0238820011 190621_UNC32-K00270_0185_BH7G72BBXY_GCCACAGG-CATGCCAT_S14_L004_R2_001.fastq.gz 3938909364 FASTQ R2_L004 unaligned CPTAC3 a2efd595-9842-4520-b7af-c47a68b62967 059c7e53f3a7012c58bffb3d0df81218 { 'aliquot_tag': 'ALQ_73deee15', 'gdc_sample_type': 'Primary Tumor' } +C3L-04475.RNA-Seq.genomic.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 70bfb00d-4b93-42f1-b297-893549d347c8.rna_seq.genomic.gdc_realn.bam 8393458748 BAM genomic harmonized CPTAC3 4a959573-325a-4240-bf33-5dced950d1cc 95ef814ffe3604341fd01d32ddee7d02 { 'aliquot_tag': 'ALQ_41caebc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04475.RNA-Seq.genomic.T.hg38 C3L-04475 PDA RNA-Seq tumor CPT0238820011 367dcf06-7a92-4d68-890a-f187ebab59f9.rna_seq.genomic.gdc_realn.bam 7746588670 BAM genomic harmonized CPTAC3 86563bd1-d456-4bd9-be7b-c3b32910b6ab d71d4a066739a2813cdf37647b376797 { 'aliquot_tag': 'ALQ_73deee15', 'gdc_sample_type': 'Primary Tumor' } +C3L-04475.RNA-Seq.R1_L004.A C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 190702_UNC32-K00270_0188_BH7CLJBBXY_TACCGAGG-CCTGAACT_S14_L004_R1_001.fastq.gz 3778418614 FASTQ R1_L004 unaligned CPTAC3 a8a064eb-7b13-4787-a851-54149dc5efc1 0a5f9bb893b7398c02f3a15da126eddc { 'aliquot_tag': 'ALQ_41caebc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-04475.RNA-Seq.R1_L004.T C3L-04475 PDA RNA-Seq tumor CPT0238820011 190621_UNC32-K00270_0185_BH7G72BBXY_GCCACAGG-CATGCCAT_S14_L004_R1_001.fastq.gz 3522404258 FASTQ R1_L004 unaligned CPTAC3 30d19a9a-ea38-4aef-bb05-c5b0f3a039ac c1dc9e8706c9013b9e6e3f12c09ade70 { 'aliquot_tag': 'ALQ_73deee15', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04475.RNA-Seq.R2_L004.A C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 190702_UNC32-K00270_0188_BH7CLJBBXY_TACCGAGG-CCTGAACT_S14_L004_R2_001.fastq.gz 4408642109 FASTQ R2_L004 unaligned CPTAC3 33d050c4-19aa-41c1-b3bf-4621fb774485 c1ac4ac1cf6353bc9542da94987a5dcd { 'aliquot_tag': 'ALQ_41caebc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-04475.RNA-Seq.R2_L004.T C3L-04475 PDA RNA-Seq tumor CPT0238820011 190621_UNC32-K00270_0185_BH7G72BBXY_GCCACAGG-CATGCCAT_S14_L004_R2_001.fastq.gz 3938909364 FASTQ R2_L004 unaligned CPTAC3 a2efd595-9842-4520-b7af-c47a68b62967 059c7e53f3a7012c58bffb3d0df81218 { 'aliquot_tag': 'ALQ_73deee15', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-04475.RNA-Seq.transcriptome.A.hg38 C3L-04475 PDA RNA-Seq tissue_normal CPT0248320009 70bfb00d-4b93-42f1-b297-893549d347c8.rna_seq.transcriptome.gdc_realn.bam 10630287515 BAM transcriptome harmonized CPTAC3 951950ee-6768-462a-9ca3-82d24c991143 479edc379aff6c59aac560b7c1ea002e { 'aliquot_tag': 'ALQ_41caebc', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04475.RNA-Seq.transcriptome.T.hg38 C3L-04475 PDA RNA-Seq tumor CPT0238820011 367dcf06-7a92-4d68-890a-f187ebab59f9.rna_seq.transcriptome.gdc_realn.bam 9841128102 BAM transcriptome harmonized CPTAC3 d8e1ca6a-919e-42ed-b6b1-2ec5f6dd3cf5 b64534f5e7b7103a52bbaa4166e34984 { 'aliquot_tag': 'ALQ_73deee15', 'gdc_sample_type': 'Primary Tumor' } C3L-04475.Targeted.T C3L-04475 PDA Targeted Sequencing tumor CPT0238820008 CPT0238820008.CustomSelection.RP-1303.PDO-18786.bam 4147639861 BAM aligned CPTAC3 5d15c9d0-381d-411b-9c2a-adca336f59e4 aaf7e3710f0bc209f16f759e2ff56e7e { 'aliquot_tag': 'ALQ_131967f0', 'gdc_sample_type': 'Primary Tumor' } @@ -15570,8 +16504,8 @@ C3L-04479.miRNA-Seq.T C3L-04479 PDA miRNA-Seq tumor CPT0238920010 190712_UNC32-K C3L-04479.miRNA-Seq.T.hg38 C3L-04479 PDA miRNA-Seq tumor CPT0238920010 e93be60f-e553-4512-9f25-63d1439d21d0_mirnaseq_gdc_realn.bam 221334831 BAM harmonized CPTAC3 4e03b311-b192-4013-b80f-e720d1233358 f451b707524204343ee9248f6f50a2e2 { 'aliquot_tag': 'ALQ_cf850d26', 'gdc_sample_type': 'Primary Tumor' } C3L-04479.RNA-Seq.chimeric.T.hg38 C3L-04479 PDA RNA-Seq tumor CPT0238920010 76cb4a2c-de55-44b4-a97f-b4b9060ac29c.rna_seq.chimeric.gdc_realn.bam 28403361 BAM chimeric harmonized CPTAC3 8e057a29-722e-417c-961b-0a8a8b2a9090 5d4e9479f79d3adaa66f4cb84b62829b { 'aliquot_tag': 'ALQ_cf850d26', 'gdc_sample_type': 'Primary Tumor' } C3L-04479.RNA-Seq.genomic.T.hg38 C3L-04479 PDA RNA-Seq tumor CPT0238920010 76cb4a2c-de55-44b4-a97f-b4b9060ac29c.rna_seq.genomic.gdc_realn.bam 7689071568 BAM genomic harmonized CPTAC3 931f4b42-3c47-4f0f-ad3a-4a156da6ae21 0e98f22215b9bb14f7f2d06f29fa1a4f { 'aliquot_tag': 'ALQ_cf850d26', 'gdc_sample_type': 'Primary Tumor' } -C3L-04479.RNA-Seq.R1_L004.T C3L-04479 PDA RNA-Seq tumor CPT0238920010 190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R1_001.fastq.gz 3539480313 FASTQ R1_L004 unaligned CPTAC3 0a0446f6-2bd9-4e7a-b205-4489e718fd1f 8410b13f2db7877df228d953d0d46dd6 { 'aliquot_tag': 'ALQ_cf850d26', 'gdc_sample_type': 'Primary Tumor' } -C3L-04479.RNA-Seq.R2_L004.T C3L-04479 PDA RNA-Seq tumor CPT0238920010 190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R2_001.fastq.gz 3922836348 FASTQ R2_L004 unaligned CPTAC3 ea7cae74-cb6b-4d52-a75f-82d1935e4ed3 d76768ed19426259a4a0bb361b48e6ba { 'aliquot_tag': 'ALQ_cf850d26', 'gdc_sample_type': 'Primary Tumor' } +C3L-04479.RNA-Seq.R1_L004.T C3L-04479 PDA RNA-Seq tumor CPT0238920010 190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R1_001.fastq.gz 3539480313 FASTQ R1_L004 unaligned CPTAC3 0a0446f6-2bd9-4e7a-b205-4489e718fd1f 8410b13f2db7877df228d953d0d46dd6 { 'aliquot_tag': 'ALQ_cf850d26', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04479.RNA-Seq.R2_L004.T C3L-04479 PDA RNA-Seq tumor CPT0238920010 190621_UNC32-K00270_0185_BH7G72BBXY_ATTGTGAA-TGCATTGC_S13_L004_R2_001.fastq.gz 3922836348 FASTQ R2_L004 unaligned CPTAC3 ea7cae74-cb6b-4d52-a75f-82d1935e4ed3 d76768ed19426259a4a0bb361b48e6ba { 'aliquot_tag': 'ALQ_cf850d26', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3L-04479.RNA-Seq.transcriptome.T.hg38 C3L-04479 PDA RNA-Seq tumor CPT0238920010 76cb4a2c-de55-44b4-a97f-b4b9060ac29c.rna_seq.transcriptome.gdc_realn.bam 9846289486 BAM transcriptome harmonized CPTAC3 9496ccd5-0c73-4c1f-a4ef-05f6266c5790 cde0a1b6a9753ca8693678923dcc3a57 { 'aliquot_tag': 'ALQ_cf850d26', 'gdc_sample_type': 'Primary Tumor' } C3L-04479.Targeted.T C3L-04479 PDA Targeted Sequencing tumor CPT0238920007 CPT0238920007.CustomSelection.RP-1303.PDO-18786.bam 4044801744 BAM aligned CPTAC3 fd7a5fe2-274b-45fe-96b9-f4939d75a518 6c659529f7aca816ed60c52320bb28ba { 'aliquot_tag': 'ALQ_48faa9c4', 'gdc_sample_type': 'Primary Tumor' } C3L-04479.Targeted.T.hg38 C3L-04479 PDA Targeted Sequencing tumor CPT0238920007 f67393d1-1d00-4c93-8268-e2e118602160_targetedsequencing_gdc_realn.bam 6051263237 BAM harmonized CPTAC3 2137fcc4-9fbe-4f35-8ae3-8881a0ade708 174c81c4098a37c25b4693b1e6673e8c { 'aliquot_tag': 'ALQ_48faa9c4', 'gdc_sample_type': 'Primary Tumor' } @@ -15588,33 +16522,52 @@ C3L-04479.WXS.T.hg38 C3L-04479 PDA WXS tumor CPT0238920007 f67393d1-1d00-4c93-82 C3L-04483.MethArray.Green.Tbm C3L-04483 AML Methylation Array tumor_bone_marrow CPT0280240002 205589740002_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 560f2532-b83f-479d-bf16-16196872adb8 4ca53fe3b3a581cefdd81570cee66367 { 'aliquot_tag': 'ALQ_b3920a19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04483.MethArray.Red.Tbm C3L-04483 AML Methylation Array tumor_bone_marrow CPT0280240002 205589740002_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 a38647e1-3d07-4378-895b-510d07968910 fe2ff9a0e6e6a6d342ca2c643e9de4a5 { 'aliquot_tag': 'ALQ_b3920a19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04483.miRNA-Seq.Tbm C3L-04483 AML miRNA-Seq tumor_bone_marrow CPT0280250002 210702_UNC32-K00270_0289_AHKJ22BBXY_GCCAAT_S12_L001_R1_001.unaln.bam 300397036 BAM unaligned CPTAC3 9bd8c421-bc81-4bb1-a693-17dba4f0a439 cec667e1b8ce4a1b5e1c18266d1e7e4d { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04483.RNA-Seq.chimeric.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 6de84e7e-9f5d-4d2d-a404-753e1efe3dca.rna_seq.chimeric.gdc_realn.bam 51212459 BAM chimeric harmonized CPTAC3 8344a8ef-fcea-4559-a000-d511bb2020d4 a959527902d53155d8692908ec261f43 { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04483.RNA-Seq.genomic.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 6de84e7e-9f5d-4d2d-a404-753e1efe3dca.rna_seq.genomic.gdc_realn.bam 7749523873 BAM genomic harmonized CPTAC3 e3317857-16cd-4496-8cc1-afe0b14be4cf 6e82de0cf3a5b0b183d6c9e7f799140b { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04483.RNA-Seq.R1_L007.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R1_001.fastq.gz 3883362168 FASTQ R1_L007 unaligned CPTAC3 1ece23d9-50e4-4840-9368-54b95b44af41 3864638805af4c5067bd04f51b6b1156 { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04483.RNA-Seq.R2_L007.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R2_001.fastq.gz 4097126030 FASTQ R2_L007 unaligned CPTAC3 553777bf-1ca0-42a7-a5b0-af7bf80dafd7 1d9c902852f84c3aea4d0fb2e257c705 { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04483.RNA-Seq.transcriptome.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 6de84e7e-9f5d-4d2d-a404-753e1efe3dca.rna_seq.transcriptome.gdc_realn.bam 7785693986 BAM transcriptome harmonized CPTAC3 0c020c4f-6031-45ac-ba37-c48599d85f36 eb54d8a7e44f0cb36d7919858a9c95f4 { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04483.miRNA-Seq.Tbm.hg38 C3L-04483 AML miRNA-Seq tumor_bone_marrow CPT0280250002 ad91e6a4-7dba-4753-bd28-85f24e4f46e5_mirnaseq_gdc_realn.bam 340255398 BAM harmonized CPTAC3 d63e54ee-025f-4ba9-b336-b456044ddc23 1216122380aefe963d26060feebac0bd { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04483.RNA-Seq.chimeric.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 5d7e874c-c265-4ed3-81d6-06fbb9ca5db6.rna_seq.chimeric.gdc_realn.bam 51206229 BAM chimeric harmonized CPTAC3 c158f449-cbdc-48b7-9d8f-8ede57e3f824 fdf86b1ea33b7d80ca955315b02c34c0 { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04483.RNA-Seq.genomic.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 5d7e874c-c265-4ed3-81d6-06fbb9ca5db6.rna_seq.genomic.gdc_realn.bam 7759602247 BAM genomic harmonized CPTAC3 326bea76-8325-4d77-88ab-04647cf30911 11c3fa0ce49713b107b3c058d69fd96c { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04483.RNA-Seq.R1_L007.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R1_001.fastq.gz 3883362168 FASTQ R1_L007 unaligned CPTAC3 1ece23d9-50e4-4840-9368-54b95b44af41 3864638805af4c5067bd04f51b6b1156 { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-04483.RNA-Seq.R2_L007.Tbm C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGTGGCA-TCCTGTAA_S28_L007_R2_001.fastq.gz 4097126030 FASTQ R2_L007 unaligned CPTAC3 553777bf-1ca0-42a7-a5b0-af7bf80dafd7 1d9c902852f84c3aea4d0fb2e257c705 { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-04483.RNA-Seq.transcriptome.Tbm.hg38 C3L-04483 AML RNA-Seq tumor_bone_marrow CPT0280250002 5d7e874c-c265-4ed3-81d6-06fbb9ca5db6.rna_seq.transcriptome.gdc_realn.bam 8951713858 BAM transcriptome harmonized CPTAC3 48724126-02bc-4c27-9dd6-712ebc452196 fc6b20b1e25f1fdec9cef449a4170e6b { 'aliquot_tag': 'ALQ_8ef223a9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04483.WGS.Nbc C3L-04483 AML WGS buccal_normal CPT0280230001 CPT0280230001.WholeGenome.RP-2158.bam 52119646344 BAM aligned CPTAC3 5836be83-3435-401e-8a6f-6e76dacb5e90 cfc3cd0bffd6adce0cf44831b80a9dcb { 'aliquot_tag': 'ALQ_98bb87b3', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04483.WGS.Nbc.hg38 C3L-04483 AML WGS buccal_normal CPT0280230001 702c3b45-dda9-4164-83d6-3bc4d436ad83_wgs_gdc_realn.bam 164113953203 BAM harmonized CPTAC3 708e41fa-402b-44c6-8464-85e884efcdf0 60a0916ed620569d3175d32668c40408 { 'aliquot_tag': 'ALQ_98bb87b3', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04483.WGS.Tbm C3L-04483 AML WGS tumor_bone_marrow CPT0280240002 CPT0280240002.WholeGenome.RP-2158.bam 50370968345 BAM aligned CPTAC3 739dc89b-264f-4039-be34-2adcc1d10330 b8994d0af3c7ff6973f939cd3e5abc1e { 'aliquot_tag': 'ALQ_b3920a19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04483.WGS.Tbm.hg38 C3L-04483 AML WGS tumor_bone_marrow CPT0280240002 f1a6c87e-6570-41b1-b355-b12ab88b8481_wgs_gdc_realn.bam 152206566574 BAM harmonized CPTAC3 3f38bb10-5dcf-4db0-9ff4-b35eb84847b6 0086daee5ea210098635f6b2f33c26f9 { 'aliquot_tag': 'ALQ_b3920a19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04483.WXS.Nbc C3L-04483 AML WXS buccal_normal CPT0280230001 CPT0280230001.WholeExome.RP-1303.bam 26415771348 BAM aligned CPTAC3 e6bc0148-0602-41db-9870-b926ef0964b3 3b98a074e07bfa34257bf07b9df926dc { 'aliquot_tag': 'ALQ_98bb87b3', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04483.WXS.Nbc.hg38 C3L-04483 AML WXS buccal_normal CPT0280230001 702c3b45-dda9-4164-83d6-3bc4d436ad83_wxs_gdc_realn.bam 37011386097 BAM harmonized CPTAC3 a2b2218d-0336-4ba8-868c-8cbb6d8ecec1 e4b64dc5a656cac2b0c3f8f9aa78a9e3 { 'aliquot_tag': 'ALQ_98bb87b3', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04483.WXS.Tbm C3L-04483 AML WXS tumor_bone_marrow CPT0280240002 CPT0280240002.WholeExome.RP-1303.bam 20503831564 BAM aligned CPTAC3 774319aa-d88f-4bcf-91a3-0217aefdaf59 928005c9de14e11eb061db10040b9158 { 'aliquot_tag': 'ALQ_b3920a19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04483.WXS.Tbm.hg38 C3L-04483 AML WXS tumor_bone_marrow CPT0280240002 f1a6c87e-6570-41b1-b355-b12ab88b8481_wxs_gdc_realn.bam 28707870850 BAM harmonized CPTAC3 434d6273-0703-43f4-a08e-fe98515df752 c1c8b822e3fc93d500c3963218a03c76 { 'aliquot_tag': 'ALQ_b3920a19', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04486.MethArray.Green.Tbm C3L-04486 AML Methylation Array tumor_bone_marrow CPT0280550002 205549610122_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ae02b611-9759-42a7-bd7f-17058c740865 7072b53cf8c6d917199a23b4e047dc5e { 'aliquot_tag': 'ALQ_93f71311', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04486.MethArray.Red.Tbm C3L-04486 AML Methylation Array tumor_bone_marrow CPT0280550002 205549610122_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 2e5c5a33-d640-4433-a99d-6ec3a95bfeaa a9417ed42235795e0fc96d62bffc70ae { 'aliquot_tag': 'ALQ_93f71311', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04486.miRNA-Seq.Tbm C3L-04486 AML miRNA-Seq tumor_bone_marrow CPT0280560002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAGATC_S7_L001_R1_001.unaln.bam 245269332 BAM unaligned CPTAC3 4b3aa569-726a-45a0-a6e1-7999ea280178 e7f0ce6efed7aa7af689cb996f1c8e32 { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04486.RNA-Seq.chimeric.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 c0174473-14e2-4822-991f-8db3f22111ce.rna_seq.chimeric.gdc_realn.bam 56749729 BAM chimeric harmonized CPTAC3 419442f0-a785-41aa-b1a1-c73eb35009f2 4b0497023ecf0e771a7851e3acbd030d { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04486.RNA-Seq.genomic.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 c0174473-14e2-4822-991f-8db3f22111ce.rna_seq.genomic.gdc_realn.bam 6984208922 BAM genomic harmonized CPTAC3 6131bba4-7147-4940-b289-9401807a90a9 fc8487a453cd38aa7ebd54de36a69c47 { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04486.RNA-Seq.R1_L007.Tbm C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 210319_UNC31-K00269_0296_AHKT37BBXY_AGGCAGAG-AGAATGCC_S25_L007_R1_001.fastq.gz 3505940724 FASTQ R1_L007 unaligned CPTAC3 97364e63-a98f-41b4-bcc8-a4a2ba459ea3 a0e60e974f3020a539a5490e1876dd7f { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04486.RNA-Seq.R2_L007.Tbm C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 210319_UNC31-K00269_0296_AHKT37BBXY_AGGCAGAG-AGAATGCC_S25_L007_R2_001.fastq.gz 3682566223 FASTQ R2_L007 unaligned CPTAC3 270717a8-e9f6-4fae-936c-2abbf8d55a93 2f85f970e9d35953cbbed8bb08f86256 { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04486.RNA-Seq.transcriptome.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 c0174473-14e2-4822-991f-8db3f22111ce.rna_seq.transcriptome.gdc_realn.bam 7145149342 BAM transcriptome harmonized CPTAC3 c2aef380-a995-42f0-9993-e134e00edbff b13750930405fc9135b28e247cb81b11 { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04486.miRNA-Seq.Tbm.hg38 C3L-04486 AML miRNA-Seq tumor_bone_marrow CPT0280560002 e43b49a1-e887-4541-9487-8c7a0d6ee918_mirnaseq_gdc_realn.bam 275502334 BAM harmonized CPTAC3 72859891-5e31-4cd4-abb8-24726d0d8f55 425385995aecebe6a6b344a9501cbd32 { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04486.RNA-Seq.chimeric.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 8eedfe9e-90e7-4ad5-bb46-c00768713368.rna_seq.chimeric.gdc_realn.bam 56733896 BAM chimeric harmonized CPTAC3 0b875311-d782-455a-9f83-33d0399c2094 acca0558b708cc70f535296d399dcb9e { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04486.RNA-Seq.genomic.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 8eedfe9e-90e7-4ad5-bb46-c00768713368.rna_seq.genomic.gdc_realn.bam 6993049248 BAM genomic harmonized CPTAC3 0a129ac8-826c-4a9c-9ffd-fa6c6ef4ed45 0a9abc589ecdadf52eaa114ac00a830d { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04486.RNA-Seq.R1_L007.Tbm C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 210319_UNC31-K00269_0296_AHKT37BBXY_AGGCAGAG-AGAATGCC_S25_L007_R1_001.fastq.gz 3505940724 FASTQ R1_L007 unaligned CPTAC3 97364e63-a98f-41b4-bcc8-a4a2ba459ea3 a0e60e974f3020a539a5490e1876dd7f { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-04486.RNA-Seq.R2_L007.Tbm C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 210319_UNC31-K00269_0296_AHKT37BBXY_AGGCAGAG-AGAATGCC_S25_L007_R2_001.fastq.gz 3682566223 FASTQ R2_L007 unaligned CPTAC3 270717a8-e9f6-4fae-936c-2abbf8d55a93 2f85f970e9d35953cbbed8bb08f86256 { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-04486.RNA-Seq.transcriptome.Tbm.hg38 C3L-04486 AML RNA-Seq tumor_bone_marrow CPT0280560002 8eedfe9e-90e7-4ad5-bb46-c00768713368.rna_seq.transcriptome.gdc_realn.bam 8193204367 BAM transcriptome harmonized CPTAC3 a57d0590-baad-47be-a0e6-7f125deaecf6 5ce9380f30a515e03dc896974ddcc00d { 'aliquot_tag': 'ALQ_d45769c1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04486.WGS.Nbc C3L-04486 AML WGS buccal_normal CPT0280540001 CPT0280540001.WholeGenome.RP-2158.bam 52605913973 BAM aligned CPTAC3 cb677994-d79a-4b78-a007-d877b7211d3d 982d69fd657bdfcfff90ac8da802df5e { 'aliquot_tag': 'ALQ_379e6b1b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04486.WGS.Nbc.hg38 C3L-04486 AML WGS buccal_normal CPT0280540001 858c4c14-fba8-42ba-b73e-bc0248fee768_wgs_gdc_realn.bam 168425129082 BAM harmonized CPTAC3 99844d17-85aa-41d8-8dac-ee50133783a6 48f0681a3f8b947473a68d38d6a8e903 { 'aliquot_tag': 'ALQ_379e6b1b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04486.WGS.Tbm C3L-04486 AML WGS tumor_bone_marrow CPT0280550002 CPT0280550002.WholeGenome.RP-2158.bam 47859394740 BAM aligned CPTAC3 81fa4f55-8e9f-4aaa-8c8b-49c2db791cd9 ead1bc160f13a2960c9eef2b1d2bbcd6 { 'aliquot_tag': 'ALQ_93f71311', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04486.WGS.Tbm.hg38 C3L-04486 AML WGS tumor_bone_marrow CPT0280550002 498dca59-144f-4287-a68a-35999a24634a_wgs_gdc_realn.bam 142452739212 BAM harmonized CPTAC3 7258358e-0e5d-40cb-bf66-47a73d1e835a b6220a9488a1414fa29c633190ef69e2 { 'aliquot_tag': 'ALQ_93f71311', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04486.WXS.Tbm C3L-04486 AML WXS tumor_bone_marrow CPT0280550002 CPT0280550002.WholeExome.RP-1303.bam 27150776670 BAM aligned CPTAC3 78ae1343-d89a-48e3-ac6c-47071fa4878e 7066e693ab4b7ad9a4d7c8236db18373 { 'aliquot_tag': 'ALQ_93f71311', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04486.WXS.Tbm.hg38 C3L-04486 AML WXS tumor_bone_marrow CPT0280550002 498dca59-144f-4287-a68a-35999a24634a_wxs_gdc_realn.bam 37508507909 BAM harmonized CPTAC3 7429a65f-8717-4d9a-a588-cb7fa49d57e8 8cf000dde2f783d86ce2e6576a115b7c { 'aliquot_tag': 'ALQ_93f71311', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04489.MethArray.Green.Tpb C3L-04489 AML Methylation Array tumor_peripheral_blood CPT0300020002 205707890036_R05C01_Grn.idat 13677890 IDAT Green NA CPTAC3 0f0b0459-8bad-4107-8e62-2ca21cc17879 d8e8bdb60b03b809f440be94a43f5cbf { 'aliquot_tag': 'ALQ_b5845144', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04489.MethArray.Red.Tpb C3L-04489 AML Methylation Array tumor_peripheral_blood CPT0300020002 205707890036_R05C01_Red.idat 13677890 IDAT Red NA CPTAC3 4550b3c5-58ac-41fa-901d-564722336276 bcb5ba3e3a01f1e5fcfdad5a89db59bf { 'aliquot_tag': 'ALQ_b5845144', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04489.miRNA-Seq.Tpb C3L-04489 AML miRNA-Seq tumor_peripheral_blood CPT0300030002 220125_UNC32-K00270_0311_AHMNYYBBXY_CGGAAT_S10_L001_R1_001.unaln.bam 306262396 BAM unaligned CPTAC3 09d5594f-f70e-4108-8605-c4dec5d54a3a f33bd5da367ffe85cc3b1cccc8c3d063 { 'aliquot_tag': 'ALQ_88e478f4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-04489.RNA-Seq.R1_L004.Tpb C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 211207_UNC32-K00270_0305_AHMW37BBXY_CAAGCTAG-ACATAGCG_S14_L004_R1_001.fastq.gz 4091881710 FASTQ R1_L004 unaligned CPTAC3 893bc095-7b43-4637-8907-176b83942bd4 9c179221561c19917f6a3ecd9aa877f0 { 'aliquot_tag': 'ALQ_88e478f4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-04489.RNA-Seq.R2_L004.Tpb C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 211207_UNC32-K00270_0305_AHMW37BBXY_CAAGCTAG-ACATAGCG_S14_L004_R2_001.fastq.gz 4428309615 FASTQ R2_L004 unaligned CPTAC3 4fbdbc23-e6f9-4b8c-8276-a7ece7600a77 937978555c086573841daa285bf61426 { 'aliquot_tag': 'ALQ_88e478f4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04489.miRNA-Seq.Tpb.hg38 C3L-04489 AML miRNA-Seq tumor_peripheral_blood CPT0300030002 001bf614-6ac0-451b-ae1c-b59472a43b1c_mirnaseq_gdc_realn.bam 338218029 BAM harmonized CPTAC3 7120e31d-f498-48be-a621-a68185485946 8d820e5ba6763564abb73d8d474faabb { 'aliquot_tag': 'ALQ_88e478f4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04489.RNA-Seq.chimeric.Tpb.hg38 C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 35dd69e6-e7fe-45b1-923b-d47f33bdee0c.rna_seq.chimeric.gdc_realn.bam 664049440 BAM chimeric harmonized CPTAC3 a34a044e-4703-483f-96ea-e7ec355dc9bf e41321ae284365bddbd221cc1065691a { 'aliquot_tag': 'ALQ_88e478f4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04489.RNA-Seq.genomic.Tpb.hg38 C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 35dd69e6-e7fe-45b1-923b-d47f33bdee0c.rna_seq.genomic.gdc_realn.bam 9107482825 BAM genomic harmonized CPTAC3 4df595cf-c425-43a8-bdb1-eb0188f5c1f9 da11d3c3a120207cb22a2bf03951426d { 'aliquot_tag': 'ALQ_88e478f4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04489.RNA-Seq.R1_L004.Tpb C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 211207_UNC32-K00270_0305_AHMW37BBXY_CAAGCTAG-ACATAGCG_S14_L004_R1_001.fastq.gz 4091881710 FASTQ R1_L004 unaligned CPTAC3 893bc095-7b43-4637-8907-176b83942bd4 9c179221561c19917f6a3ecd9aa877f0 { 'aliquot_tag': 'ALQ_88e478f4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L004' } +C3L-04489.RNA-Seq.R2_L004.Tpb C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 211207_UNC32-K00270_0305_AHMW37BBXY_CAAGCTAG-ACATAGCG_S14_L004_R2_001.fastq.gz 4428309615 FASTQ R2_L004 unaligned CPTAC3 4fbdbc23-e6f9-4b8c-8276-a7ece7600a77 937978555c086573841daa285bf61426 { 'aliquot_tag': 'ALQ_88e478f4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L004' } +C3L-04489.RNA-Seq.transcriptome.Tpb.hg38 C3L-04489 AML RNA-Seq tumor_peripheral_blood CPT0300030002 35dd69e6-e7fe-45b1-923b-d47f33bdee0c.rna_seq.transcriptome.gdc_realn.bam 7637885479 BAM transcriptome harmonized CPTAC3 a22089c1-2b1b-45a6-8afc-67f6371e47be d188c3d0a97450595b18316bd5fe5a8a { 'aliquot_tag': 'ALQ_88e478f4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04489.WGS.Nbc C3L-04489 AML WGS buccal_normal CPT0299980001 CPT0299980001.WholeGenome.RP-2158.bam 64551663126 BAM aligned CPTAC3 1f718aa5-d4ac-4e59-b114-65e10de6a7ab c58f4764fdd8acdccf2acaac8fb4d843 { 'aliquot_tag': 'ALQ_dc9e032c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04489.WGS.Nbc.hg38 C3L-04489 AML WGS buccal_normal CPT0299980001 c40e8654-b3db-46cb-a941-a2ca9f597275_wgs_gdc_realn.bam 188675373049 BAM harmonized CPTAC3 a6625c57-93f4-4c2e-b532-8c887d04f22c 08124b04aead061158aecbbaed99f2c5 { 'aliquot_tag': 'ALQ_dc9e032c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04489.WGS.Tpb C3L-04489 AML WGS tumor_peripheral_blood CPT0300020002 CPT0300020002.WholeGenome.RP-2158.bam 61725265113 BAM aligned CPTAC3 fd85b48b-8edb-43e3-910d-6224a2d39210 4bf827b980f0539ea93ed3e1236f66c6 { 'aliquot_tag': 'ALQ_b5845144', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04489.WGS.Tpb.hg38 C3L-04489 AML WGS tumor_peripheral_blood CPT0300020002 3f2fe6dc-0c6c-43bd-87b1-4a73b7f038f7_wgs_gdc_realn.bam 180784278937 BAM harmonized CPTAC3 a3d3e92c-ed2b-4a4b-8291-040d062ae556 bc712a239b26551de783d10072130217 { 'aliquot_tag': 'ALQ_b5845144', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04489.WXS.Nbc C3L-04489 AML WXS buccal_normal CPT0299980001 CPT0299980001.WholeExome.RP-1303.bam 27796943985 BAM aligned CPTAC3 bb513703-b93b-4ae2-bc12-b45ee0b99470 687da230c19eb175be8f796fb04fac7b { 'aliquot_tag': 'ALQ_dc9e032c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04489.WXS.Nbc.hg38 C3L-04489 AML WXS buccal_normal CPT0299980001 c40e8654-b3db-46cb-a941-a2ca9f597275_wxs_gdc_realn.bam 98070189416 BAM harmonized CPTAC3 59561b27-a5e3-420d-9f98-63d191c4e74c 0e3fb3b9178dca93695f4ac1b0df96be { 'aliquot_tag': 'ALQ_dc9e032c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04489.WXS.Tpb C3L-04489 AML WXS tumor_peripheral_blood CPT0300020002 CPT0300020002.WholeExome.RP-1303.bam 28425899790 BAM aligned CPTAC3 81eef125-2345-4d4b-a0f3-8e7680f6f31b 0e80d5a420129a1e10ecd07254cdf640 { 'aliquot_tag': 'ALQ_b5845144', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04489.WXS.Tpb.hg38 C3L-04489 AML WXS tumor_peripheral_blood CPT0300020002 3f2fe6dc-0c6c-43bd-87b1-4a73b7f038f7_wxs_gdc_realn.bam 39139211183 BAM harmonized CPTAC3 0ac42abf-43ea-46f0-a2e0-1b4c2b810106 aa4f5e784f29f431b6438116f62cc684 { 'aliquot_tag': 'ALQ_b5845144', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04495.MethArray.Green.A C3L-04495 PDA Methylation Array tissue_normal CPT0239140007 203561620086_R06C01_Grn.idat 13676237 IDAT Green NA CPTAC3 6be2b94b-9297-499c-a262-43a23847d74e c2919fb1c6a7f7e1d42968e1e3a7a0e0 { 'aliquot_tag': 'ALQ_8d9ed5bd', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04495.MethArray.Green.T C3L-04495 PDA Methylation Array tumor CPT0239100012 203561620040_R07C01_Grn.idat 13676211 IDAT Green NA CPTAC3 bf2e7c30-dcdf-4dea-b5d1-7e453f7ab5ac 1cdf4cb4a6e1f6ad6467e2e9edd16849 { 'aliquot_tag': 'ALQ_116fb6b3', 'gdc_sample_type': 'Primary Tumor' } C3L-04495.MethArray.Red.A C3L-04495 PDA Methylation Array tissue_normal CPT0239140007 203561620086_R06C01_Red.idat 13676237 IDAT Red NA CPTAC3 3d7d6823-5dff-457d-8e1c-5c1c816a8d4b 3b9ae1c78be00a8e894be2fdae8a2ba5 { 'aliquot_tag': 'ALQ_8d9ed5bd', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -15622,9 +16575,9 @@ C3L-04495.MethArray.Red.T C3L-04495 PDA Methylation Array tumor CPT0239100012 20 C3L-04495.miRNA-Seq.T C3L-04495 PDA miRNA-Seq tumor CPT0239100015 190712_UNC32-K00270_0192_BH7HL3BBXY_GACGAC_S17_L006_R1_001.unaln.bam 216522026 BAM unaligned CPTAC3 1583ad51-813e-47f1-9fbd-ec4f32f02829 af7ac73b637e4f634198ad216e106540 { 'aliquot_tag': 'ALQ_8f0b2310', 'gdc_sample_type': 'Primary Tumor' } C3L-04495.miRNA-Seq.T.hg38 C3L-04495 PDA miRNA-Seq tumor CPT0239100015 033d8cf1-959b-47d5-a607-129079a8c173_mirnaseq_gdc_realn.bam 246360639 BAM harmonized CPTAC3 39357f78-abb8-4e0c-8dcd-9670eed43fc3 b0fb1d628038096e26c29bf15b157bb4 { 'aliquot_tag': 'ALQ_8f0b2310', 'gdc_sample_type': 'Primary Tumor' } C3L-04495.RNA-Seq.chimeric.T.hg38 C3L-04495 PDA RNA-Seq tumor CPT0239100015 1bb44b6d-e604-4954-97e1-cdcfb6d05cd5.rna_seq.chimeric.gdc_realn.bam 40799038 BAM chimeric harmonized CPTAC3 564a6493-438e-4feb-9c15-54825cf6d0a2 1ca04ff6a5e5d9d53ccce245cbe36106 { 'aliquot_tag': 'ALQ_8f0b2310', 'gdc_sample_type': 'Primary Tumor' } -C3L-04495.RNA-Seq.genomic.T.hg38 C3L-04495 PDA RNA-Seq tumor CPT0239100015 1bb44b6d-e604-4954-97e1-cdcfb6d05cd5.rna_seq.genomic.gdc_realn.bam 8342435953 BAM genomic harmonized CPTAC3 d491fe29-2856-423f-a791-43a5c11d26c0 ba3d50ea6572abaa8b5cf796be610cbb { 'aliquot_tag': 'ALQ_8f0b2310', 'gdc_sample_type': 'Primary Tumor' } -C3L-04495.RNA-Seq.R1_L003.T C3L-04495 PDA RNA-Seq tumor CPT0239100015 190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R1_001.fastq.gz 3310477843 FASTQ R1_L003 unaligned CPTAC3 165bff0a-b883-4098-b18f-ff82d102e506 0ba1cbd4cd92f82550ac7c139ae94e3a { 'aliquot_tag': 'ALQ_8f0b2310', 'gdc_sample_type': 'Primary Tumor' } -C3L-04495.RNA-Seq.R2_L003.T C3L-04495 PDA RNA-Seq tumor CPT0239100015 190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R2_001.fastq.gz 3637048729 FASTQ R2_L003 unaligned CPTAC3 5d7103c9-28f9-4015-8faa-16fc46808618 d15b5797c6b062ee9d3f485345bfe048 { 'aliquot_tag': 'ALQ_8f0b2310', 'gdc_sample_type': 'Primary Tumor' } +C3L-04495.RNA-Seq.genomic.T.hg38 C3L-04495 PDA RNA-Seq tumor CPT0239100015 1bb44b6d-e604-4954-97e1-cdcfb6d05cd5.rna_seq.genomic.gdc_realn.bam 8342435953 BAM genomic harmonized CPTAC3 323ab26e-d342-4127-9838-9d667a3009d2 ba3d50ea6572abaa8b5cf796be610cbb { 'aliquot_tag': 'ALQ_8f0b2310', 'gdc_sample_type': 'Primary Tumor' } +C3L-04495.RNA-Seq.R1_L003.T C3L-04495 PDA RNA-Seq tumor CPT0239100015 190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R1_001.fastq.gz 3310477843 FASTQ R1_L003 unaligned CPTAC3 165bff0a-b883-4098-b18f-ff82d102e506 0ba1cbd4cd92f82550ac7c139ae94e3a { 'aliquot_tag': 'ALQ_8f0b2310', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-04495.RNA-Seq.R2_L003.T C3L-04495 PDA RNA-Seq tumor CPT0239100015 190614_UNC32-K00270_0182_BH7777BBXY_ATATGGAT-CTGTATTA_S11_L003_R2_001.fastq.gz 3637048729 FASTQ R2_L003 unaligned CPTAC3 5d7103c9-28f9-4015-8faa-16fc46808618 d15b5797c6b062ee9d3f485345bfe048 { 'aliquot_tag': 'ALQ_8f0b2310', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-04495.RNA-Seq.transcriptome.T.hg38 C3L-04495 PDA RNA-Seq tumor CPT0239100015 1bb44b6d-e604-4954-97e1-cdcfb6d05cd5.rna_seq.transcriptome.gdc_realn.bam 8109919530 BAM transcriptome harmonized CPTAC3 94ea282d-3955-44fb-8a6f-84e2f1a1d955 21a82141d63f0565ebb37502d3a90ec6 { 'aliquot_tag': 'ALQ_8f0b2310', 'gdc_sample_type': 'Primary Tumor' } C3L-04495.Targeted.T C3L-04495 PDA Targeted Sequencing tumor CPT0239100012 CPT0239100012.CustomSelection.RP-1303.PDO-18786.bam 5054387145 BAM aligned CPTAC3 65896bba-f581-4a74-82af-fc386d89bbc4 aaa237bacbaf2c05a805eafb8c2889ac { 'aliquot_tag': 'ALQ_116fb6b3', 'gdc_sample_type': 'Primary Tumor' } C3L-04495.Targeted.T.hg38 C3L-04495 PDA Targeted Sequencing tumor CPT0239100012 7a791fb9-327f-4816-a1f0-c105cc4bfa45_targetedsequencing_gdc_realn.bam 6997693977 BAM harmonized CPTAC3 fae2e5dd-443a-44b6-87c4-34ef3e8c9c14 90d2a565cbc71715bffd5e2b032c4876 { 'aliquot_tag': 'ALQ_116fb6b3', 'gdc_sample_type': 'Primary Tumor' } @@ -15638,17 +16591,20 @@ C3L-04495.WXS.N C3L-04495 PDA WXS blood_normal CPT0239150002 CPT0239150002.Whole C3L-04495.WXS.N.hg38 C3L-04495 PDA WXS blood_normal CPT0239150002 b3f9a3d2-80f0-4db7-bc8c-e3a45cd91e2b_wxs_gdc_realn.bam 39969909601 BAM harmonized CPTAC3 19d20b8d-942f-4e2d-8084-e9e4d00175f8 0041da17f3caf63feed5dd2e3634f943 { 'aliquot_tag': 'ALQ_c0940882', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04495.WXS.T C3L-04495 PDA WXS tumor CPT0239100012 CPT0239100012.WholeExome.RP-1303.bam 42696955248 BAM aligned CPTAC3 82da46b7-04c4-4c96-af56-66afde853593 d64d983a2c14018b5eb143b8d4eb619b { 'aliquot_tag': 'ALQ_116fb6b3', 'gdc_sample_type': 'Primary Tumor' } C3L-04495.WXS.T.hg38 C3L-04495 PDA WXS tumor CPT0239100012 7a791fb9-327f-4816-a1f0-c105cc4bfa45_wxs_gdc_realn.bam 58899842046 BAM harmonized CPTAC3 cc7ace0c-4b41-4b67-977b-7669e12f1547 4e04ee9c8217baf0e0d7dc90c890960e { 'aliquot_tag': 'ALQ_116fb6b3', 'gdc_sample_type': 'Primary Tumor' } -C3L-04496.RNA-Seq.R1_.T C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 20210723_P2_F4_WB7988-plate2_S64_R1_001.fastq.gz 5632256532 FASTQ R1_ unaligned CPTAC3 ad7050e7-829c-4255-adf9-fcc5bb6a0786 a5cc154480b6b94529b6e2b2eb051004 { 'aliquot_tag': 'ALQ_5dbda989', 'gdc_sample_type': 'Primary Tumor' } -C3L-04496.RNA-Seq.R2_.T C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 20210723_P2_F4_WB7988-plate2_S64_R2_001.fastq.gz 5719709301 FASTQ R2_ unaligned CPTAC3 e89fca3c-3404-4fdb-afd8-95f8698c0b41 922233e3d258b98c57512c27cada7988 { 'aliquot_tag': 'ALQ_5dbda989', 'gdc_sample_type': 'Primary Tumor' } +C3L-04496.RNA-Seq.chimeric.T.hg38 C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 ced77ec4-e0d3-4c6d-8a92-406da155aeb4.rna_seq.chimeric.gdc_realn.bam 176513117 BAM chimeric harmonized CPTAC3 2b4748c9-379e-4371-b688-10f696c97411 4f7cd2a1219cb4e1c003a9555c56452f { 'aliquot_tag': 'ALQ_5dbda989', 'gdc_sample_type': 'Primary Tumor' } +C3L-04496.RNA-Seq.genomic.T.hg38 C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 ced77ec4-e0d3-4c6d-8a92-406da155aeb4.rna_seq.genomic.gdc_realn.bam 8913342157 BAM genomic harmonized CPTAC3 3faece61-f08e-40a6-b305-712719ec69ab 6cec8871753b0329b91f0b96be5ef54e { 'aliquot_tag': 'ALQ_5dbda989', 'gdc_sample_type': 'Primary Tumor' } +C3L-04496.RNA-Seq.T C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 20210723_P2_F4_WB7988-plate2_S64_R1_001.fastq.gz 5632256532 FASTQ unaligned CPTAC3 ad7050e7-829c-4255-adf9-fcc5bb6a0786 a5cc154480b6b94529b6e2b2eb051004 +C3L-04496.RNA-Seq.T C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 20210723_P2_F4_WB7988-plate2_S64_R2_001.fastq.gz 5719709301 FASTQ unaligned CPTAC3 e89fca3c-3404-4fdb-afd8-95f8698c0b41 922233e3d258b98c57512c27cada7988 +C3L-04496.RNA-Seq.transcriptome.T.hg38 C3L-04496 HNSCC RNA-Seq tumor CPT0337290001 ced77ec4-e0d3-4c6d-8a92-406da155aeb4.rna_seq.transcriptome.gdc_realn.bam 5594905231 BAM transcriptome harmonized CPTAC3 b7c4c215-dfc1-40ab-9536-166929f09406 66515ef196a812c8af4ec74917170281 { 'aliquot_tag': 'ALQ_5dbda989', 'gdc_sample_type': 'Primary Tumor' } C3L-04505.MethArray.Green.Tbm C3L-04505 AML Methylation Array tumor_bone_marrow CPT0260200002 203561450068_R03C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4a519a86-b13b-4767-a21c-584ddf88f6de a69512f3651f2a626f8975abd79a4ba6 { 'aliquot_tag': 'ALQ_5398beeb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04505.MethArray.Red.Tbm C3L-04505 AML Methylation Array tumor_bone_marrow CPT0260200002 203561450068_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 726f778d-267d-4778-81f5-ce8157a2e3bd 6f5eed506ed34f9cfb36406c3ca1e3d7 { 'aliquot_tag': 'ALQ_5398beeb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04505.miRNA-Seq.Tbm C3L-04505 AML miRNA-Seq tumor_bone_marrow CPT0260220002 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTGAT_S25_L002_R1_001.unaln.bam 208980673 BAM unaligned CPTAC3 fe8147c1-656c-4755-b707-ba73be4934a4 69d2f017d2038d0d301fe3db9c7e4e71 { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04505.miRNA-Seq.Tbm.hg38 C3L-04505 AML miRNA-Seq tumor_bone_marrow CPT0260220002 8c3c5eb8-b82d-46b6-85d6-cd7c5be3c732_mirnaseq_gdc_realn.bam 228448541 BAM harmonized CPTAC3 f494f859-8150-486e-b4ec-09e6cd967f5c 4ff7e6bd69b438f2075033464adde4ff { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04505.RNA-Seq.chimeric.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 cef0c9a1-b382-4f4b-97e5-489dc5a31c7d.rna_seq.chimeric.gdc_realn.bam 47640535 BAM chimeric harmonized CPTAC3 cf28537e-822e-44aa-a12b-a625b39275d2 7e8895e0dd50d0cbc0b4caf706e8503e { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04505.RNA-Seq.genomic.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 cef0c9a1-b382-4f4b-97e5-489dc5a31c7d.rna_seq.genomic.gdc_realn.bam 8720344112 BAM genomic harmonized CPTAC3 b9c7a303-5735-4342-8540-bc315eb2d213 12c1152d854f0e9db07403d8e42bebff { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04505.RNA-Seq.R1_L006.Tbm C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 190426_UNC32-K00270_0167_AH7CK7BBXY_ACTAAGAT-AACCGCGG_S19_L006_R1_001.fastq.gz 4195277363 FASTQ R1_L006 unaligned CPTAC3 ba291ac6-8d33-47bf-abd9-bec94a701732 d541a66e9f29840857921b749a7a659d { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04505.RNA-Seq.R2_L006.Tbm C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 190426_UNC32-K00270_0167_AH7CK7BBXY_ACTAAGAT-AACCGCGG_S19_L006_R2_001.fastq.gz 4661956424 FASTQ R2_L006 unaligned CPTAC3 5557fd11-809c-49a6-b118-7e7ca5e54935 ad7bcaf251127ba4ed71a29bd3fe72da { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04505.RNA-Seq.transcriptome.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 cef0c9a1-b382-4f4b-97e5-489dc5a31c7d.rna_seq.transcriptome.gdc_realn.bam 7883815214 BAM transcriptome harmonized CPTAC3 50c37ed1-7b0a-4010-b80d-a60bcbdf23b3 06fc52288d07c608604c0e192854c838 { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04505.RNA-Seq.chimeric.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 ce6cf8f5-2391-4436-b785-572909d6f232.rna_seq.chimeric.gdc_realn.bam 47623569 BAM chimeric harmonized CPTAC3 9eb0e99b-b15a-45e8-a5cb-293ecba7ec0e b24f906677b476f4eae940ae75a6aeae { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04505.RNA-Seq.genomic.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 ce6cf8f5-2391-4436-b785-572909d6f232.rna_seq.genomic.gdc_realn.bam 8721227961 BAM genomic harmonized CPTAC3 0913c28b-dfb6-437f-bc19-e3f24da616b1 0e0abaa2666518bf28e6771042097cf3 { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04505.RNA-Seq.R1_L006.Tbm C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 190426_UNC32-K00270_0167_AH7CK7BBXY_ACTAAGAT-AACCGCGG_S19_L006_R1_001.fastq.gz 4195277363 FASTQ R1_L006 unaligned CPTAC3 ba291ac6-8d33-47bf-abd9-bec94a701732 d541a66e9f29840857921b749a7a659d { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-04505.RNA-Seq.R2_L006.Tbm C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 190426_UNC32-K00270_0167_AH7CK7BBXY_ACTAAGAT-AACCGCGG_S19_L006_R2_001.fastq.gz 4661956424 FASTQ R2_L006 unaligned CPTAC3 5557fd11-809c-49a6-b118-7e7ca5e54935 ad7bcaf251127ba4ed71a29bd3fe72da { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-04505.RNA-Seq.transcriptome.Tbm.hg38 C3L-04505 AML RNA-Seq tumor_bone_marrow CPT0260220002 ce6cf8f5-2391-4436-b785-572909d6f232.rna_seq.transcriptome.gdc_realn.bam 9015987746 BAM transcriptome harmonized CPTAC3 cc57bbe8-a738-4fb3-8072-86768a4faa7b ac230de01d7f6ca5e86f94579e486f8d { 'aliquot_tag': 'ALQ_2958ed8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04505.WGS.Nbc C3L-04505 AML WGS buccal_normal CPT0260190002 CPT0260190002.WholeGenome.RP-1303.bam 75024756758 BAM aligned CPTAC3 149ecc0f-5f99-4867-bb26-bd3f6123f1f6 e9e2926cd0b5fff4013ea991c598aac9 { 'aliquot_tag': 'ALQ_d81cae34', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04505.WGS.Nbc.hg38 C3L-04505 AML WGS buccal_normal CPT0260190002 a3a5280c-83e2-460b-9dfb-9d1c5b7f38bb_wgs_gdc_realn.bam 107625952032 BAM harmonized CPTAC3 1f46e1d8-e1bc-47a3-95b5-841d6ef1fc43 2da9e8c684070c367e8ff49e7268df41 { 'aliquot_tag': 'ALQ_d81cae34', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04505.WGS.Tbm C3L-04505 AML WGS tumor_bone_marrow CPT0260200002 CPT0260200002.WholeGenome.RP-1303.bam 67617021929 BAM aligned CPTAC3 ef2315bf-84bc-4dbe-8288-acb1f66b8242 ef01e900247afc7bf907d0273788c641 { 'aliquot_tag': 'ALQ_5398beeb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -15661,11 +16617,11 @@ C3L-04508.MethArray.Green.Tbm C3L-04508 AML Methylation Array tumor_bone_marrow C3L-04508.MethArray.Red.Tbm C3L-04508 AML Methylation Array tumor_bone_marrow CPT0260410002 203561620064_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 674da194-d8a5-473d-a64f-707be22cf5b1 93a74c5ddb6480df0a77524493b1bcb4 { 'aliquot_tag': 'ALQ_b8a17446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04508.miRNA-Seq.Tbm C3L-04508 AML miRNA-Seq tumor_bone_marrow CPT0260420002 190508_UNC31-K00269_0215_BH7FYKBBXY_ATCACG_S1_L003_R1_001.unaln.bam 357516687 BAM unaligned CPTAC3 ae825b24-4d64-4b5c-90fd-92f3ecb0d3db 56a197298fb7cf51ce3e83f58b8dba39 { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04508.miRNA-Seq.Tbm.hg38 C3L-04508 AML miRNA-Seq tumor_bone_marrow CPT0260420002 47c1b0cd-77c4-4fb1-b97f-298185dfe2bd_mirnaseq_gdc_realn.bam 390705894 BAM harmonized CPTAC3 c499f060-59ed-49f2-bada-cfc8ceb6eaf4 0f44b320ef41aea6fbe223da2907ed70 { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04508.RNA-Seq.chimeric.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 236a0b22-2198-4221-9a46-2e69f10e9008.rna_seq.chimeric.gdc_realn.bam 50053910 BAM chimeric harmonized CPTAC3 509cd3e8-f0b3-436a-9a80-e2b476fc117c f1d53442f5e84f6d440435ffb62046cb { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04508.RNA-Seq.genomic.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 236a0b22-2198-4221-9a46-2e69f10e9008.rna_seq.genomic.gdc_realn.bam 9248260833 BAM genomic harmonized CPTAC3 2eaf14f9-e2c3-4cd0-97b3-78889d2239fa 228d87ace151a5890f29066103524f9f { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04508.RNA-Seq.R1_L002.Tbm C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATCTCG-ATCTTAGT_S5_L002_R1_001.fastq.gz 4562468942 FASTQ R1_L002 unaligned CPTAC3 030e9e72-38d2-4d03-a9bd-fe44189eb0c1 d68d87df125466318490723db95cb303 { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04508.RNA-Seq.R2_L002.Tbm C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATCTCG-ATCTTAGT_S5_L002_R2_001.fastq.gz 5038034529 FASTQ R2_L002 unaligned CPTAC3 9e9e843f-3b4f-4fd4-9f51-6bc02b3d1a91 1f9be3c4e20cc3f6c5a040978c32a02c { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04508.RNA-Seq.transcriptome.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 236a0b22-2198-4221-9a46-2e69f10e9008.rna_seq.transcriptome.gdc_realn.bam 8882055841 BAM transcriptome harmonized CPTAC3 49e28720-9f3e-4fe5-aa15-b06e6db21c79 e84b598664b3ce8b4ce87dc02e2722bf { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04508.RNA-Seq.chimeric.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 3bbacb86-ed42-483c-8b5e-22ec45e27d95.rna_seq.chimeric.gdc_realn.bam 50016037 BAM chimeric harmonized CPTAC3 03183bdf-1feb-4077-9f4c-de08db883fee b8aa1032d3f4ae3eb115999784d30e60 { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04508.RNA-Seq.genomic.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 3bbacb86-ed42-483c-8b5e-22ec45e27d95.rna_seq.genomic.gdc_realn.bam 9249246885 BAM genomic harmonized CPTAC3 eb8a80ec-42ec-496d-bcc0-a0ae095bbe2a c5d3004567344f2194a982f61c5b0762 { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04508.RNA-Seq.R1_L002.Tbm C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATCTCG-ATCTTAGT_S5_L002_R1_001.fastq.gz 4562468942 FASTQ R1_L002 unaligned CPTAC3 030e9e72-38d2-4d03-a9bd-fe44189eb0c1 d68d87df125466318490723db95cb303 { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-04508.RNA-Seq.R2_L002.Tbm C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 190604_UNC32-K00270_0177_AH7F5VBBXY_ATATCTCG-ATCTTAGT_S5_L002_R2_001.fastq.gz 5038034529 FASTQ R2_L002 unaligned CPTAC3 9e9e843f-3b4f-4fd4-9f51-6bc02b3d1a91 1f9be3c4e20cc3f6c5a040978c32a02c { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-04508.RNA-Seq.transcriptome.Tbm.hg38 C3L-04508 AML RNA-Seq tumor_bone_marrow CPT0260420002 3bbacb86-ed42-483c-8b5e-22ec45e27d95.rna_seq.transcriptome.gdc_realn.bam 10263600128 BAM transcriptome harmonized CPTAC3 0c30d624-3a5b-4beb-8b63-b32648608ab4 72ed56052ad681730030ca9244bbb369 { 'aliquot_tag': 'ALQ_ff010e96', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04508.WGS.Tbm C3L-04508 AML WGS tumor_bone_marrow CPT0260410002 CPT0260410002.WholeGenome.RP-1303.bam 61188913765 BAM aligned CPTAC3 2fddfc53-64ea-4583-88ea-e568e06c6ad0 82c090d1dcd0a1b82547a09d63080030 { 'aliquot_tag': 'ALQ_b8a17446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04508.WGS.Tbm.hg38 C3L-04508 AML WGS tumor_bone_marrow CPT0260410002 fdb0ac1e-04ff-42a2-b94e-e0601601bd3f_wgs_gdc_realn.bam 90844622922 BAM harmonized CPTAC3 cc0aee4c-9d1f-42de-9753-a19867f49f6c c0f6fb23e54606e53274b517f91127a4 { 'aliquot_tag': 'ALQ_b8a17446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04508.WXS.Nbc C3L-04508 AML WXS buccal_normal CPT0260400003 CPT0260400003.WholeExome.RP-1303.bam 20217568361 BAM aligned CPTAC3 142af992-b115-4035-8f65-5c0fdb469f7b 2e2bb82f620a5f63cc3a95016c9782c4 { 'aliquot_tag': 'ALQ_f2c66d60', 'gdc_sample_type': 'Buccal Cell Normal' } @@ -15676,11 +16632,11 @@ C3L-04537.MethArray.Green.T C3L-04537 GBM Methylation Array tumor CPT0264330006 C3L-04537.MethArray.Red.T C3L-04537 GBM Methylation Array tumor CPT0264330006 204367490029_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 687374eb-8fe2-4377-9c33-eb11fbed82ab 6698b55000f0b861ad514dbee48e8ec8 { 'aliquot_tag': 'ALQ_2c46f794', 'gdc_sample_type': 'Primary Tumor' } C3L-04537.miRNA-Seq.T C3L-04537 GBM miRNA-Seq tumor CPT0264330009 200403_UNC31-K00269_0274_AHCF7GBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 160338019 BAM unaligned CPTAC3 e0433688-2cf4-4012-a31c-40858a47f20c a9d726e79b842df3f130d295a107bdd5 { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor' } C3L-04537.miRNA-Seq.T.hg38 C3L-04537 GBM miRNA-Seq tumor CPT0264330009 e2c8afe9-1334-41fe-84ea-44ffde88c54b_mirnaseq_gdc_realn.bam 175870324 BAM harmonized CPTAC3 dae48e44-42b5-4715-b6cc-3bedcb382738 2e32777e3889d50fffb0062623c49eda { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor' } -C3L-04537.RNA-Seq.chimeric.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 4be630a3-2224-4cd9-b794-b78914aebb0d.rna_seq.chimeric.gdc_realn.bam 31759376 BAM chimeric harmonized CPTAC3 51c8c2b3-91f2-4f0e-9bdd-a56dde51bcd0 8d81b4bd43d20e084596dfc5f0a0c306 { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor' } -C3L-04537.RNA-Seq.genomic.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 4be630a3-2224-4cd9-b794-b78914aebb0d.rna_seq.genomic.gdc_realn.bam 7860174884 BAM genomic harmonized CPTAC3 d8196edf-2b9a-4dba-8ba8-7b4530bb2abe b9cbe2e772c70539d5f185c9d2e4fc7b { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor' } -C3L-04537.RNA-Seq.R1_L005.T C3L-04537 GBM RNA-Seq tumor CPT0264330009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R1_001.fastq.gz 3611841350 FASTQ R1_L005 unaligned CPTAC3 adf59d70-7072-4025-8eba-01d2dcd6e667 9f079fe2d490cdefb9cb37efc869c0d0 { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor' } -C3L-04537.RNA-Seq.R2_L005.T C3L-04537 GBM RNA-Seq tumor CPT0264330009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R2_001.fastq.gz 4151095210 FASTQ R2_L005 unaligned CPTAC3 cd035eaf-a77f-4b9b-af7d-f4c0af78fac7 af74daf39ea1442b2d6bc29a4b53813c { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor' } -C3L-04537.RNA-Seq.transcriptome.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 4be630a3-2224-4cd9-b794-b78914aebb0d.rna_seq.transcriptome.gdc_realn.bam 8506831391 BAM transcriptome harmonized CPTAC3 c926c019-4177-4c2b-8411-4ae2387ee59e cc5be81e9004df126a53635dad84bcff { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor' } +C3L-04537.RNA-Seq.chimeric.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 9d47a324-71ed-4603-a27a-dbd367afd1b1.rna_seq.chimeric.gdc_realn.bam 31737144 BAM chimeric harmonized CPTAC3 d79ea2da-e345-40fc-ba2a-f135616ee641 646234d4cf3f84898af61f259a34f05d { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor' } +C3L-04537.RNA-Seq.genomic.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 9d47a324-71ed-4603-a27a-dbd367afd1b1.rna_seq.genomic.gdc_realn.bam 7861451470 BAM genomic harmonized CPTAC3 719ec9da-6c6a-48cb-b0db-a555f97e9d17 31483f917ad5e0b5e2329480b59a30ce { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor' } +C3L-04537.RNA-Seq.R1_L005.T C3L-04537 GBM RNA-Seq tumor CPT0264330009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R1_001.fastq.gz 3611841350 FASTQ R1_L005 unaligned CPTAC3 adf59d70-7072-4025-8eba-01d2dcd6e667 9f079fe2d490cdefb9cb37efc869c0d0 { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04537.RNA-Seq.R2_L005.T C3L-04537 GBM RNA-Seq tumor CPT0264330009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R2_001.fastq.gz 4151095210 FASTQ R2_L005 unaligned CPTAC3 cd035eaf-a77f-4b9b-af7d-f4c0af78fac7 af74daf39ea1442b2d6bc29a4b53813c { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-04537.RNA-Seq.transcriptome.T.hg38 C3L-04537 GBM RNA-Seq tumor CPT0264330009 9d47a324-71ed-4603-a27a-dbd367afd1b1.rna_seq.transcriptome.gdc_realn.bam 9758852519 BAM transcriptome harmonized CPTAC3 ea32352d-33d3-469d-b550-583b9afe884c 811cfecc3078235254efa21a6bb9d9c4 { 'aliquot_tag': 'ALQ_bcf9ea05', 'gdc_sample_type': 'Primary Tumor' } C3L-04537.WGS.N C3L-04537 GBM WGS blood_normal CPT0265790002 CPT0265790002.WholeGenome.RP-2158.bam 28393863499 BAM aligned CPTAC3 4c3e04d4-4e57-430d-9ed0-3ba74a599c96 4d7648eb5647ea91c50ba4b8f8db64f6 { 'aliquot_tag': 'ALQ_5c7d628e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04537.WGS.N.hg38 C3L-04537 GBM WGS blood_normal CPT0265790002 b2eb19a2-f110-438f-b16c-26dc0f691c14_wgs_gdc_realn.bam 84679557904 BAM harmonized CPTAC3 90c46761-ce1b-43f8-ae6a-af25020697fe a95e3329b7a11d65747272ec55ea192e { 'aliquot_tag': 'ALQ_5c7d628e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04537.WGS.T C3L-04537 GBM WGS tumor CPT0264330006 CPT0264330006.WholeGenome.RP-2158.bam 35253805632 BAM aligned CPTAC3 b7552f3d-2324-4f5d-a10d-aa1a3b3520df c92bfbb2bc6f91e49f445fd722103a15 { 'aliquot_tag': 'ALQ_2c46f794', 'gdc_sample_type': 'Primary Tumor' } @@ -15693,11 +16649,11 @@ C3L-04539.MethArray.Green.T C3L-04539 GBM Methylation Array tumor CPT0264350006 C3L-04539.MethArray.Red.T C3L-04539 GBM Methylation Array tumor CPT0264350006 204372030085_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 0243e79d-f860-437d-b8d3-ae877033d6a3 434542391e1717d56f9dbd89613d0408 { 'aliquot_tag': 'ALQ_a3060234', 'gdc_sample_type': 'Primary Tumor' } C3L-04539.miRNA-Seq.T C3L-04539 GBM miRNA-Seq tumor CPT0264350009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAAAAG_S4_L001_R1_001.unaln.bam 175572653 BAM unaligned CPTAC3 588e9b9c-f58d-442d-8337-96f2f4a8ff5d da1711c418b4771166b969812903db74 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor' } C3L-04539.miRNA-Seq.T.hg38 C3L-04539 GBM miRNA-Seq tumor CPT0264350009 d7cf6ba2-3742-4f46-b660-a588eeb66304_mirnaseq_gdc_realn.bam 196058858 BAM harmonized CPTAC3 67bdfc12-9aa8-4108-ab7a-2a3baec90666 701fc9094e3355c62bcea06591320c5b { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor' } -C3L-04539.RNA-Seq.chimeric.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 fb800bbb-4081-4098-afed-17adfcd7a63d.rna_seq.chimeric.gdc_realn.bam 30216713 BAM chimeric harmonized CPTAC3 32023f3c-efa3-44d3-a964-0eed5b63243b 74d4a68672efd70d29c4843904507bc8 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor' } -C3L-04539.RNA-Seq.genomic.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 fb800bbb-4081-4098-afed-17adfcd7a63d.rna_seq.genomic.gdc_realn.bam 7643112637 BAM genomic harmonized CPTAC3 b2bea335-4c87-49ec-a7b4-23997e37d747 fe002bb574e2e06c32fdee741bbcb9e4 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor' } -C3L-04539.RNA-Seq.R1_L005.T C3L-04539 GBM RNA-Seq tumor CPT0264350009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R1_001.fastq.gz 3426488460 FASTQ R1_L005 unaligned CPTAC3 9b56e66a-4850-46ec-b519-5379c91aa066 e8747e07e6763ca7c23d24cd8ac16cd2 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor' } -C3L-04539.RNA-Seq.R2_L005.T C3L-04539 GBM RNA-Seq tumor CPT0264350009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R2_001.fastq.gz 4043729957 FASTQ R2_L005 unaligned CPTAC3 5a856d4a-bb70-45dc-af41-53ec656ffc10 1806f53223d43577fa53667a94e8a692 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor' } -C3L-04539.RNA-Seq.transcriptome.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 fb800bbb-4081-4098-afed-17adfcd7a63d.rna_seq.transcriptome.gdc_realn.bam 7087928853 BAM transcriptome harmonized CPTAC3 bca8ece5-f4e9-4404-b7dd-ec522a9c4ce1 133b45e327e2c4a493c52d3e99e2ef65 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor' } +C3L-04539.RNA-Seq.chimeric.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 e690556f-476e-48f3-b1b5-bc04c26614bc.rna_seq.chimeric.gdc_realn.bam 30204293 BAM chimeric harmonized CPTAC3 cf12258c-0866-433d-89fa-e652890e2b83 8ca1f1d834ef1bfad28ae0e940ddff40 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor' } +C3L-04539.RNA-Seq.genomic.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 e690556f-476e-48f3-b1b5-bc04c26614bc.rna_seq.genomic.gdc_realn.bam 7643857120 BAM genomic harmonized CPTAC3 2e77a9cf-6857-47ab-a0f4-9256b7466451 f82e84272263602e7f35dfcee6a1cb00 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor' } +C3L-04539.RNA-Seq.R1_L005.T C3L-04539 GBM RNA-Seq tumor CPT0264350009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R1_001.fastq.gz 3426488460 FASTQ R1_L005 unaligned CPTAC3 9b56e66a-4850-46ec-b519-5379c91aa066 e8747e07e6763ca7c23d24cd8ac16cd2 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04539.RNA-Seq.R2_L005.T C3L-04539 GBM RNA-Seq tumor CPT0264350009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R2_001.fastq.gz 4043729957 FASTQ R2_L005 unaligned CPTAC3 5a856d4a-bb70-45dc-af41-53ec656ffc10 1806f53223d43577fa53667a94e8a692 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-04539.RNA-Seq.transcriptome.T.hg38 C3L-04539 GBM RNA-Seq tumor CPT0264350009 e690556f-476e-48f3-b1b5-bc04c26614bc.rna_seq.transcriptome.gdc_realn.bam 8130031489 BAM transcriptome harmonized CPTAC3 d6e56972-20d2-4720-aa6f-79725bfc1d4d c268e266075febef9461b6c25a70d096 { 'aliquot_tag': 'ALQ_33b91fa5', 'gdc_sample_type': 'Primary Tumor' } C3L-04539.WGS.N C3L-04539 GBM WGS blood_normal CPT0265800002 CPT0265800002.WholeGenome.RP-2158.bam 35537633707 BAM aligned CPTAC3 de26b2e4-b960-4ff2-bdb0-ef982fa91c77 b1bb1888ddec94689903269b8ea6d9bd { 'aliquot_tag': 'ALQ_a03bb22a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04539.WGS.N.hg38 C3L-04539 GBM WGS blood_normal CPT0265800002 56cd7cd6-c6e0-4a44-90df-b10abcd38233_wgs_gdc_realn.bam 106937786996 BAM harmonized CPTAC3 35697bb3-4b0e-498e-86b8-045a3b37c481 ec840a40e77688a67ea020ea3280b40e { 'aliquot_tag': 'ALQ_a03bb22a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04539.WGS.T C3L-04539 GBM WGS tumor CPT0264350006 CPT0264350006.WholeGenome.RP-2158.bam 25110093183 BAM aligned CPTAC3 9fe4e777-e8ff-4089-9f15-42ca3ac3d0e7 5c80b62b120630cc1e6f949b8891ece6 { 'aliquot_tag': 'ALQ_a3060234', 'gdc_sample_type': 'Primary Tumor' } @@ -15710,11 +16666,11 @@ C3L-04728.MethArray.Green.T C3L-04728 LSCC Methylation Array tumor CPT0304210006 C3L-04728.MethArray.Red.T C3L-04728 LSCC Methylation Array tumor CPT0304210006 204367490151_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 5dde43c3-32cc-4515-b322-e3f055c045ac 13367b60ec90be4203c5cf9a9ba9c306 { 'aliquot_tag': 'ALQ_4cce6a95', 'gdc_sample_type': 'Primary Tumor' } C3L-04728.miRNA-Seq.T C3L-04728 LSCC miRNA-Seq tumor CPT0304210009 200224_UNC31-K00269_0267_AHC722BBXY_TAGCTT_S10_L008_R1_001.unaln.bam 223644871 BAM unaligned CPTAC3 c9247f3b-2fce-49e5-9235-b17f8d74488b 2a3e59920a2721f7baba33d528ae5f8b { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor' } C3L-04728.miRNA-Seq.T.hg38 C3L-04728 LSCC miRNA-Seq tumor CPT0304210009 d9a8f749-302b-46d9-8977-a8c1882e0abc_mirnaseq_gdc_realn.bam 247148853 BAM harmonized CPTAC3 e81b44fd-5351-442b-8742-7e4b1eff7e7b f60c73fa2c3984a2c3d1d5fd74b6462a { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor' } -C3L-04728.RNA-Seq.chimeric.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 d416b34d-f3bc-487e-ba15-86fc68934ac6.rna_seq.chimeric.gdc_realn.bam 43688249 BAM chimeric harmonized CPTAC3 9215b2e1-8ecb-4dac-8ce6-58c7435a52fd 24216063ae412b321e7cd5d6fbe284de { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor' } -C3L-04728.RNA-Seq.genomic.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 d416b34d-f3bc-487e-ba15-86fc68934ac6.rna_seq.genomic.gdc_realn.bam 11000648918 BAM genomic harmonized CPTAC3 3414c45c-bd9a-493c-99e2-a5395f9b7a13 8c9a3220d8cbd907a1f840de61086dff { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor' } -C3L-04728.RNA-Seq.R1_L003.T C3L-04728 LSCC RNA-Seq tumor CPT0304210009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R1_001.fastq.gz 5549023600 FASTQ R1_L003 unaligned CPTAC3 53da8d54-81eb-4038-88b2-3196cb814a69 5f0301dca335ecbca6f6c7a81daa71b7 { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor' } -C3L-04728.RNA-Seq.R2_L003.T C3L-04728 LSCC RNA-Seq tumor CPT0304210009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R2_001.fastq.gz 5848132575 FASTQ R2_L003 unaligned CPTAC3 872ca10d-39ab-43d2-a514-281d77055d1e 956bad92b3a6e4ebcf6440254973ce09 { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor' } -C3L-04728.RNA-Seq.transcriptome.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 d416b34d-f3bc-487e-ba15-86fc68934ac6.rna_seq.transcriptome.gdc_realn.bam 12517870836 BAM transcriptome harmonized CPTAC3 ecc8e5dd-1d2a-4966-9958-f8bc639f28ab e65998a68305bfe00b34d296b69308fa { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor' } +C3L-04728.RNA-Seq.chimeric.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 949d4ce1-45a4-4c09-93ad-c20b02c26e27.rna_seq.chimeric.gdc_realn.bam 43681674 BAM chimeric harmonized CPTAC3 07d34b8f-f59a-4e86-8ea9-3be918b2b53f 1dda597283a534f6eb3968480cb510c4 { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor' } +C3L-04728.RNA-Seq.genomic.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 949d4ce1-45a4-4c09-93ad-c20b02c26e27.rna_seq.genomic.gdc_realn.bam 11002863245 BAM genomic harmonized CPTAC3 d8dbb2da-ba68-4181-adf3-022f18a4f7b2 97a4074e695322af831da4ef04cc4721 { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor' } +C3L-04728.RNA-Seq.R1_L003.T C3L-04728 LSCC RNA-Seq tumor CPT0304210009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R1_001.fastq.gz 5549023600 FASTQ R1_L003 unaligned CPTAC3 53da8d54-81eb-4038-88b2-3196cb814a69 5f0301dca335ecbca6f6c7a81daa71b7 { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-04728.RNA-Seq.R2_L003.T C3L-04728 LSCC RNA-Seq tumor CPT0304210009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L003_R2_001.fastq.gz 5848132575 FASTQ R2_L003 unaligned CPTAC3 872ca10d-39ab-43d2-a514-281d77055d1e 956bad92b3a6e4ebcf6440254973ce09 { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-04728.RNA-Seq.transcriptome.T.hg38 C3L-04728 LSCC RNA-Seq tumor CPT0304210009 949d4ce1-45a4-4c09-93ad-c20b02c26e27.rna_seq.transcriptome.gdc_realn.bam 14268836861 BAM transcriptome harmonized CPTAC3 aebb366a-380e-4469-b337-d629b131a4ad 0bb1d8d51062bc286396d9e7d7a5fd4e { 'aliquot_tag': 'ALQ_dc717704', 'gdc_sample_type': 'Primary Tumor' } C3L-04728.WGS.N C3L-04728 LSCC WGS blood_normal CPT0305060002 CPT0305060002.WholeGenome.RP-2158.bam 21530141327 BAM aligned CPTAC3 bb954c13-7c4d-4098-8994-fce2233295e3 48def4e16c0dc836931c639a6fd66265 { 'aliquot_tag': 'ALQ_123cd823', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04728.WGS.N.hg38 C3L-04728 LSCC WGS blood_normal CPT0305060002 89c144d0-e672-49fe-aa42-b3f957230089_wgs_gdc_realn.bam 63433937050 BAM harmonized CPTAC3 6fb14feb-df82-4a97-aa74-fd1c460c89c2 b219d61cb468c2b87c76abfb2a678deb { 'aliquot_tag': 'ALQ_123cd823', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04728.WGS.T C3L-04728 LSCC WGS tumor CPT0304210006 CPT0304210006.WholeGenome.RP-2158.bam 25053735048 BAM aligned CPTAC3 b507c8f9-863c-470e-a8e8-b3b1743a13e0 6ad557444509bbf7e04befa26e8c37c1 { 'aliquot_tag': 'ALQ_4cce6a95', 'gdc_sample_type': 'Primary Tumor' } @@ -15727,11 +16683,11 @@ C3L-04731.MethArray.Green.T C3L-04731 GBM Methylation Array tumor CPT0258360006 C3L-04731.MethArray.Red.T C3L-04731 GBM Methylation Array tumor CPT0258360006 204372030072_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 1455c5d3-26c7-4671-b7ca-7946ec497ba0 3858f73ac87d4249f225c9a376600bf4 { 'aliquot_tag': 'ALQ_ad891573', 'gdc_sample_type': 'Primary Tumor' } C3L-04731.miRNA-Seq.T C3L-04731 GBM miRNA-Seq tumor CPT0258360009 200403_UNC31-K00269_0274_AHCF7GBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 163649841 BAM unaligned CPTAC3 7d68a4a1-186b-45cf-9842-1b93139f81aa 0e2fc6c3fc3d5e14cfe8ae54f9e7fe84 { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor' } C3L-04731.miRNA-Seq.T.hg38 C3L-04731 GBM miRNA-Seq tumor CPT0258360009 27acded0-fbca-4101-ad20-cbb61017cb78_mirnaseq_gdc_realn.bam 178901159 BAM harmonized CPTAC3 433f9cf1-b2ca-4468-8451-e0f3a6c74297 e6d4007dc049a2c716e7f3001299f31a { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor' } -C3L-04731.RNA-Seq.chimeric.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 032a25d4-e1dc-4978-b3e8-4f1839fee34f.rna_seq.chimeric.gdc_realn.bam 23563616 BAM chimeric harmonized CPTAC3 a0ecdd04-ce03-41fa-9ec4-398aeb7df6c8 816ee8f2f33a7ab49db77cf003a9dd11 { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor' } -C3L-04731.RNA-Seq.genomic.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 032a25d4-e1dc-4978-b3e8-4f1839fee34f.rna_seq.genomic.gdc_realn.bam 6524984335 BAM genomic harmonized CPTAC3 5268ea9c-7745-42ce-a0b7-13e9036bdd89 7ed9c189f79d1e85112fac1d0d347632 { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor' } -C3L-04731.RNA-Seq.R1_L005.T C3L-04731 GBM RNA-Seq tumor CPT0258360009 200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R1_001.fastq.gz 2915649612 FASTQ R1_L005 unaligned CPTAC3 fdcc07bb-3566-4ad0-b8af-832168038559 4a4e55f1119aa6ebdf20db0942ff41d1 { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor' } -C3L-04731.RNA-Seq.R2_L005.T C3L-04731 GBM RNA-Seq tumor CPT0258360009 200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R2_001.fastq.gz 3439998432 FASTQ R2_L005 unaligned CPTAC3 d82e8a6e-aaca-4d9d-b26e-96046b568d10 41c80d9f58067ca57ae52b5923be8f69 { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor' } -C3L-04731.RNA-Seq.transcriptome.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 032a25d4-e1dc-4978-b3e8-4f1839fee34f.rna_seq.transcriptome.gdc_realn.bam 6290953858 BAM transcriptome harmonized CPTAC3 7d8e288d-9cdc-4db1-a2d8-fa03ada3ba9b c2513597ca1b34f48dd942862d8a6097 { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor' } +C3L-04731.RNA-Seq.chimeric.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 cd0b583f-350f-4c64-9b80-92f48d2fcf99.rna_seq.chimeric.gdc_realn.bam 23548388 BAM chimeric harmonized CPTAC3 b16e3a89-2b59-47d3-bbfd-0edc8147ba4f bb5003555ce66c20c6c71d04534d8da4 { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor' } +C3L-04731.RNA-Seq.genomic.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 cd0b583f-350f-4c64-9b80-92f48d2fcf99.rna_seq.genomic.gdc_realn.bam 6525609441 BAM genomic harmonized CPTAC3 b5e0e9ab-cdc6-4ef0-a424-0a12f537e9c1 7c0f2f648362292824504bc27fa38241 { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor' } +C3L-04731.RNA-Seq.R1_L005.T C3L-04731 GBM RNA-Seq tumor CPT0258360009 200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R1_001.fastq.gz 2915649612 FASTQ R1_L005 unaligned CPTAC3 fdcc07bb-3566-4ad0-b8af-832168038559 4a4e55f1119aa6ebdf20db0942ff41d1 { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04731.RNA-Seq.R2_L005.T C3L-04731 GBM RNA-Seq tumor CPT0258360009 200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R2_001.fastq.gz 3439998432 FASTQ R2_L005 unaligned CPTAC3 d82e8a6e-aaca-4d9d-b26e-96046b568d10 41c80d9f58067ca57ae52b5923be8f69 { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-04731.RNA-Seq.transcriptome.T.hg38 C3L-04731 GBM RNA-Seq tumor CPT0258360009 cd0b583f-350f-4c64-9b80-92f48d2fcf99.rna_seq.transcriptome.gdc_realn.bam 7196254642 BAM transcriptome harmonized CPTAC3 28587aac-0694-47c7-9b27-44f66f3eabc9 56ccb6763c27d338b56a5edc5150ca6e { 'aliquot_tag': 'ALQ_3d3608e2', 'gdc_sample_type': 'Primary Tumor' } C3L-04731.WGS.N C3L-04731 GBM WGS blood_normal CPT0258420002 CPT0258420002.WholeGenome.RP-2158.bam 24023306337 BAM aligned CPTAC3 5bf7f78d-ac65-472b-b155-cc53b9de62b7 315efec8e111c62279fb3a5a9805ee87 { 'aliquot_tag': 'ALQ_42614712', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04731.WGS.N.hg38 C3L-04731 GBM WGS blood_normal CPT0258420002 580da526-9175-4120-8b85-febc8c389b31_wgs_gdc_realn.bam 72428099741 BAM harmonized CPTAC3 d1a5f165-da82-4896-bd87-83d56f133baa a39015e0c347b175963ea7c94b769014 { 'aliquot_tag': 'ALQ_42614712', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04731.WGS.T C3L-04731 GBM WGS tumor CPT0258360006 CPT0258360006.WholeGenome.RP-2158.bam 25501382330 BAM aligned CPTAC3 c18a3425-ebed-4e66-8bab-35f8bf4fcb29 a934642f7b3abef9bea83e736e18c9a4 { 'aliquot_tag': 'ALQ_ad891573', 'gdc_sample_type': 'Primary Tumor' } @@ -15748,16 +16704,16 @@ C3L-04746.miRNA-Seq.A C3L-04746 LSCC miRNA-Seq tissue_normal CPT0279080009 20051 C3L-04746.miRNA-Seq.A.hg38 C3L-04746 LSCC miRNA-Seq tissue_normal CPT0279080009 6a3d9456-8cc8-46ec-8c08-ffe28b3a39e3_mirnaseq_gdc_realn.bam 245529205 BAM harmonized CPTAC3 83191fc9-e0ab-48aa-8d4b-e1e311434ab5 4cbcdc92d54705747b805bc836daa69e { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04746.miRNA-Seq.T C3L-04746 LSCC miRNA-Seq tumor CPT0279010013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GAGTGG_S12_L007_R1_001.unaln.bam 267646206 BAM unaligned CPTAC3 1be13f42-714e-4730-9c70-be63f4571026 849a0e88d6ff71e26fc868eec32c115f { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor' } C3L-04746.miRNA-Seq.T.hg38 C3L-04746 LSCC miRNA-Seq tumor CPT0279010013 0b3b1933-2420-4ccd-82be-63b558395913_mirnaseq_gdc_realn.bam 288594484 BAM harmonized CPTAC3 96f481f5-3a99-49d9-98f3-cb4ada66922f f20249de167096fb3443a02a6db0548d { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-04746.RNA-Seq.chimeric.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 09fa942f-c400-41e4-b59a-7b8e87ae9c72.rna_seq.chimeric.gdc_realn.bam 28822950 BAM chimeric harmonized CPTAC3 923f95da-c85d-4d9a-8bd0-1e22c85a46f8 a0848bc25305a198df61da7193ddd10e { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04746.RNA-Seq.chimeric.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 c62f4b86-db08-4015-a4bb-e913113a4e42.rna_seq.chimeric.gdc_realn.bam 76292239 BAM chimeric harmonized CPTAC3 4f3934d5-308a-4013-9d20-0aa674e0b412 62f9aee459557d68dec10f180aa9ac4b { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-04746.RNA-Seq.genomic.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 09fa942f-c400-41e4-b59a-7b8e87ae9c72.rna_seq.genomic.gdc_realn.bam 7325941985 BAM genomic harmonized CPTAC3 30eb0b83-f458-4d96-9206-4ada4587b972 5351f6dbfae419f8a8bb17117802979a { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04746.RNA-Seq.genomic.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 c62f4b86-db08-4015-a4bb-e913113a4e42.rna_seq.genomic.gdc_realn.bam 7880824997 BAM genomic harmonized CPTAC3 524f4e31-94e4-4c83-837a-859af87e3011 79e0b9f0910e54c30d32030e14032002 { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-04746.RNA-Seq.R1_L006.T C3L-04746 LSCC RNA-Seq tumor CPT0279010013 200505_UNC31-K00269_0277_AHGFKNBBXY_ACTCGTGT-ATTGGAAC_S21_L006_R1_001.fastq.gz 3686471434 FASTQ R1_L006 unaligned CPTAC3 eff0d265-610e-4573-9937-6ce7611a7551 2900520527d13c4caac9b336bc82d88d { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-04746.RNA-Seq.R1_L008.A C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L008_R1_001.fastq.gz 3452803753 FASTQ R1_L008 unaligned CPTAC3 6fa7166d-8384-4103-8c9f-7f5088af16d5 f07c3f9a69e4083604b46d799458429a { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04746.RNA-Seq.R2_L006.T C3L-04746 LSCC RNA-Seq tumor CPT0279010013 200505_UNC31-K00269_0277_AHGFKNBBXY_ACTCGTGT-ATTGGAAC_S21_L006_R2_001.fastq.gz 4157452037 FASTQ R2_L006 unaligned CPTAC3 e75763ef-0566-46a9-853e-347fcd83ee41 c8203ec697ed4da5ea77aed4097d4e10 { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor' } -C3L-04746.RNA-Seq.R2_L008.A C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L008_R2_001.fastq.gz 3854339961 FASTQ R2_L008 unaligned CPTAC3 65c5378d-ec10-4518-9bf3-f9c9ae0d0e1a 9fac4559a53bbddee125489b7ea44b72 { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04746.RNA-Seq.transcriptome.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 09fa942f-c400-41e4-b59a-7b8e87ae9c72.rna_seq.transcriptome.gdc_realn.bam 6831803619 BAM transcriptome harmonized CPTAC3 d30c7ed5-ba64-4ce5-abf9-1ddada77fe6c 04031cc4b53c855d3f8a817c1e8d8816 { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04746.RNA-Seq.transcriptome.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 c62f4b86-db08-4015-a4bb-e913113a4e42.rna_seq.transcriptome.gdc_realn.bam 8414195760 BAM transcriptome harmonized CPTAC3 cd13d446-41f9-4046-a023-c433e46696b3 3cb8594c77f77c29d24e03daffc32e96 { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-04746.RNA-Seq.chimeric.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 5bd51719-9a3d-47f5-8b96-6433f6b53d17.rna_seq.chimeric.gdc_realn.bam 28814950 BAM chimeric harmonized CPTAC3 ce61d4b5-16db-47a2-bcf7-8034432d8e48 0d37163f61cd17f0722df5045acd0490 { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04746.RNA-Seq.chimeric.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 5fe1196d-6b40-4763-be5a-bf7d8c7def7f.rna_seq.chimeric.gdc_realn.bam 76300959 BAM chimeric harmonized CPTAC3 6b7738bc-eabe-4494-9cb6-42064f2808e3 ed4683b61b764e180add6be89780aa72 { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-04746.RNA-Seq.genomic.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 5bd51719-9a3d-47f5-8b96-6433f6b53d17.rna_seq.genomic.gdc_realn.bam 7327116810 BAM genomic harmonized CPTAC3 531ee9dd-78b9-4c21-a270-e21ebd9118f3 f49a26b07142048424fcb25b6af59bc7 { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04746.RNA-Seq.genomic.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 5fe1196d-6b40-4763-be5a-bf7d8c7def7f.rna_seq.genomic.gdc_realn.bam 7883255906 BAM genomic harmonized CPTAC3 f6059728-89e8-4901-b95b-c9a4912cba03 13c3fd1c4a2d8956cfd2faaa367c07c4 { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor' } +C3L-04746.RNA-Seq.R1_L006.T C3L-04746 LSCC RNA-Seq tumor CPT0279010013 200505_UNC31-K00269_0277_AHGFKNBBXY_ACTCGTGT-ATTGGAAC_S21_L006_R1_001.fastq.gz 3686471434 FASTQ R1_L006 unaligned CPTAC3 eff0d265-610e-4573-9937-6ce7611a7551 2900520527d13c4caac9b336bc82d88d { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-04746.RNA-Seq.R1_L008.A C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L008_R1_001.fastq.gz 3452803753 FASTQ R1_L008 unaligned CPTAC3 6fa7166d-8384-4103-8c9f-7f5088af16d5 f07c3f9a69e4083604b46d799458429a { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-04746.RNA-Seq.R2_L006.T C3L-04746 LSCC RNA-Seq tumor CPT0279010013 200505_UNC31-K00269_0277_AHGFKNBBXY_ACTCGTGT-ATTGGAAC_S21_L006_R2_001.fastq.gz 4157452037 FASTQ R2_L006 unaligned CPTAC3 e75763ef-0566-46a9-853e-347fcd83ee41 c8203ec697ed4da5ea77aed4097d4e10 { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-04746.RNA-Seq.R2_L008.A C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L008_R2_001.fastq.gz 3854339961 FASTQ R2_L008 unaligned CPTAC3 65c5378d-ec10-4518-9bf3-f9c9ae0d0e1a 9fac4559a53bbddee125489b7ea44b72 { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-04746.RNA-Seq.transcriptome.A.hg38 C3L-04746 LSCC RNA-Seq tissue_normal CPT0279080009 5bd51719-9a3d-47f5-8b96-6433f6b53d17.rna_seq.transcriptome.gdc_realn.bam 7705591781 BAM transcriptome harmonized CPTAC3 f3f44b6f-09eb-4f00-9685-8624ad8303a8 8b5d9017f2a1204694e507ede330b913 { 'aliquot_tag': 'ALQ_e0c0c8e4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04746.RNA-Seq.transcriptome.T.hg38 C3L-04746 LSCC RNA-Seq tumor CPT0279010013 5fe1196d-6b40-4763-be5a-bf7d8c7def7f.rna_seq.transcriptome.gdc_realn.bam 9393620648 BAM transcriptome harmonized CPTAC3 4989d874-315a-49e0-832b-9443b3cca92f ee7f44043431eed0f6ab9c2e91d32af8 { 'aliquot_tag': 'ALQ_141e72ca', 'gdc_sample_type': 'Primary Tumor' } C3L-04746.WGS.N C3L-04746 LSCC WGS blood_normal CPT0279170002 CPT0279170002.WholeGenome.RP-2158.bam 20565972778 BAM aligned CPTAC3 9853ceef-16c7-48d8-975d-ba1c0dfa6173 28d3948dc0eeab605340f3d40ed052e0 { 'aliquot_tag': 'ALQ_3e1e5518', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04746.WGS.N.hg38 C3L-04746 LSCC WGS blood_normal CPT0279170002 5f8cfa01-07c2-4f48-ab0e-31ff66be67df_wgs_gdc_realn.bam 59978343142 BAM harmonized CPTAC3 0935491d-6a06-4602-977e-871773b588a6 460c2d0042d4a0294c7cae372c934086 { 'aliquot_tag': 'ALQ_3e1e5518', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04746.WGS.T C3L-04746 LSCC WGS tumor CPT0279010009 CPT0279010009.WholeGenome.RP-2158.bam 23826429502 BAM aligned CPTAC3 b73d223c-517b-41cf-967a-355c01181b38 b6f9b60aa0b0011162cd21f8c44bacbc { 'aliquot_tag': 'ALQ_edd0aa95', 'gdc_sample_type': 'Primary Tumor' } @@ -15776,16 +16732,16 @@ C3L-04749.miRNA-Seq.A C3L-04749 LSCC miRNA-Seq tissue_normal CPT0271400006 20051 C3L-04749.miRNA-Seq.A.hg38 C3L-04749 LSCC miRNA-Seq tissue_normal CPT0271400006 78b78ca1-df48-4b52-86eb-0a8170d61777_mirnaseq_gdc_realn.bam 275286965 BAM harmonized CPTAC3 697363af-0a8e-4935-be12-c3f47f459cf4 874b149999e818c9c54d2970ee286ca0 { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04749.miRNA-Seq.T C3L-04749 LSCC miRNA-Seq tumor CPT0271380009 200224_UNC31-K00269_0267_AHC722BBXY_GTAGAG_S17_L006_R1_001.unaln.bam 181009156 BAM unaligned CPTAC3 ec01ccc8-8b6b-4bc6-abdc-3e7413c63fb8 346205a506d73732d44227dd057e7fa6 { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor' } C3L-04749.miRNA-Seq.T.hg38 C3L-04749 LSCC miRNA-Seq tumor CPT0271380009 784f5baf-ffdb-4e82-a17e-c00621ec0944_mirnaseq_gdc_realn.bam 200820385 BAM harmonized CPTAC3 965c0262-f225-4fa1-a1e7-6544b0abe5f6 b5cb21595c7273105cd5bf23cdc1f1ae { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor' } -C3L-04749.RNA-Seq.chimeric.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 cbb9e0ce-b2ca-447c-a3d4-d4f17db78542.rna_seq.chimeric.gdc_realn.bam 25535050 BAM chimeric harmonized CPTAC3 0ecae818-2abf-438e-b516-f781e044b137 ee21de13906d5be2288b8d30e9ed9d02 { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04749.RNA-Seq.chimeric.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 fef94fed-a5cd-4c3a-92d4-8848cc7af3ee.rna_seq.chimeric.gdc_realn.bam 55854266 BAM chimeric harmonized CPTAC3 d997fa3c-75af-41cb-b934-ed6355a86c5d 4595e336517b52d41728025a725df376 { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor' } -C3L-04749.RNA-Seq.genomic.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 cbb9e0ce-b2ca-447c-a3d4-d4f17db78542.rna_seq.genomic.gdc_realn.bam 7207196401 BAM genomic harmonized CPTAC3 08822bb5-6db8-479f-beca-1a21855717a4 1fd9832cb37f08b522f68291326e4bb1 { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04749.RNA-Seq.genomic.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 fef94fed-a5cd-4c3a-92d4-8848cc7af3ee.rna_seq.genomic.gdc_realn.bam 8407250999 BAM genomic harmonized CPTAC3 66681c59-d075-4103-a259-858c1d72bb6e 86dd8a5f99ac94f4af4e2d5c4b49fecf { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor' } -C3L-04749.RNA-Seq.R1_L001.T C3L-04749 LSCC RNA-Seq tumor CPT0271380009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACACTAAG-ATCCATAT_S1_L001_R1_001.fastq.gz 3912060536 FASTQ R1_L001 unaligned CPTAC3 9851d22e-75a3-4685-92f4-fceddb612a0c 956466fec5e50287c68ea89e64d26ef0 { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor' } -C3L-04749.RNA-Seq.R1_L007.A C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 200505_UNC32-K00270_0246_BHH5F5BBXY_AAGATACT-ACTTACAT_S25_L007_R1_001.fastq.gz 3309872976 FASTQ R1_L007 unaligned CPTAC3 d1935c39-b390-43d3-87d4-1fd3e222096c 5cab4015e3ecb50e3d0484e43dd9e6cf { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04749.RNA-Seq.R2_L001.T C3L-04749 LSCC RNA-Seq tumor CPT0271380009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACACTAAG-ATCCATAT_S1_L001_R2_001.fastq.gz 4338079910 FASTQ R2_L001 unaligned CPTAC3 1e23a930-3a62-4de6-ac26-2d39621847ec 32ffd599c14cd6676bc42c81f40ff12b { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor' } -C3L-04749.RNA-Seq.R2_L007.A C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 200505_UNC32-K00270_0246_BHH5F5BBXY_AAGATACT-ACTTACAT_S25_L007_R2_001.fastq.gz 3968764367 FASTQ R2_L007 unaligned CPTAC3 c4da1660-db14-4679-955a-499096ee0978 21fb919bff4847231f9579f8d7fcd809 { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04749.RNA-Seq.transcriptome.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 cbb9e0ce-b2ca-447c-a3d4-d4f17db78542.rna_seq.transcriptome.gdc_realn.bam 7691662294 BAM transcriptome harmonized CPTAC3 ec1f6c33-d5e0-43a0-a5e7-c3a386fe5ec3 5b3bc253cdf4cc26249e2abdb891815d { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04749.RNA-Seq.transcriptome.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 fef94fed-a5cd-4c3a-92d4-8848cc7af3ee.rna_seq.transcriptome.gdc_realn.bam 9114756669 BAM transcriptome harmonized CPTAC3 7914362d-f286-4545-be98-8f420f475c6e 65a41bf968892a32f6dbc3a3b217e2fb { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor' } +C3L-04749.RNA-Seq.chimeric.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 7aa14015-1edb-49ee-9203-4778a187b023.rna_seq.chimeric.gdc_realn.bam 25537797 BAM chimeric harmonized CPTAC3 25c610f1-9d74-46a9-a249-34adedb9e689 4c0012f01726f086ecebde7bc9588240 { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04749.RNA-Seq.chimeric.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 4d19e417-81e9-4bb3-8376-f0863bef667c.rna_seq.chimeric.gdc_realn.bam 55848955 BAM chimeric harmonized CPTAC3 71537e85-3722-4d39-a141-2abb7cef3ee1 f08013833391ec59d665b707c7cd8266 { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor' } +C3L-04749.RNA-Seq.genomic.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 7aa14015-1edb-49ee-9203-4778a187b023.rna_seq.genomic.gdc_realn.bam 7208850821 BAM genomic harmonized CPTAC3 e1ccd9ee-3b8d-4cd9-9599-22bfb378fa4d 4a4a0040d48b5b4adbc24be3665e154b { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04749.RNA-Seq.genomic.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 4d19e417-81e9-4bb3-8376-f0863bef667c.rna_seq.genomic.gdc_realn.bam 8409087059 BAM genomic harmonized CPTAC3 85f44a04-a58c-4734-b18c-7de4e45173cb 34e542f11741048e25bf74665955c1a4 { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor' } +C3L-04749.RNA-Seq.R1_L001.T C3L-04749 LSCC RNA-Seq tumor CPT0271380009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACACTAAG-ATCCATAT_S1_L001_R1_001.fastq.gz 3912060536 FASTQ R1_L001 unaligned CPTAC3 9851d22e-75a3-4685-92f4-fceddb612a0c 956466fec5e50287c68ea89e64d26ef0 { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04749.RNA-Seq.R1_L007.A C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 200505_UNC32-K00270_0246_BHH5F5BBXY_AAGATACT-ACTTACAT_S25_L007_R1_001.fastq.gz 3309872976 FASTQ R1_L007 unaligned CPTAC3 d1935c39-b390-43d3-87d4-1fd3e222096c 5cab4015e3ecb50e3d0484e43dd9e6cf { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-04749.RNA-Seq.R2_L001.T C3L-04749 LSCC RNA-Seq tumor CPT0271380009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACACTAAG-ATCCATAT_S1_L001_R2_001.fastq.gz 4338079910 FASTQ R2_L001 unaligned CPTAC3 1e23a930-3a62-4de6-ac26-2d39621847ec 32ffd599c14cd6676bc42c81f40ff12b { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04749.RNA-Seq.R2_L007.A C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 200505_UNC32-K00270_0246_BHH5F5BBXY_AAGATACT-ACTTACAT_S25_L007_R2_001.fastq.gz 3968764367 FASTQ R2_L007 unaligned CPTAC3 c4da1660-db14-4679-955a-499096ee0978 21fb919bff4847231f9579f8d7fcd809 { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-04749.RNA-Seq.transcriptome.A.hg38 C3L-04749 LSCC RNA-Seq tissue_normal CPT0271400006 7aa14015-1edb-49ee-9203-4778a187b023.rna_seq.transcriptome.gdc_realn.bam 8695779514 BAM transcriptome harmonized CPTAC3 2a29ac17-47fb-476e-8e0b-14bce6b30d41 6a76be2366c1866ad7dbc8313c913441 { 'aliquot_tag': 'ALQ_e87192c5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04749.RNA-Seq.transcriptome.T.hg38 C3L-04749 LSCC RNA-Seq tumor CPT0271380009 4d19e417-81e9-4bb3-8376-f0863bef667c.rna_seq.transcriptome.gdc_realn.bam 10222721424 BAM transcriptome harmonized CPTAC3 ac826f9a-8903-4761-a362-85d788fe48eb cbdd808d03e8d3d721025aafef34d691 { 'aliquot_tag': 'ALQ_55bbf42d', 'gdc_sample_type': 'Primary Tumor' } C3L-04749.WGS.N C3L-04749 LSCC WGS blood_normal CPT0271470002 CPT0271470002.WholeGenome.RP-2158.bam 24821097773 BAM aligned CPTAC3 d9735d16-e7c4-4090-9ca7-8ccf3a1a9901 b9b17b42ee90d01c1b4703e4aec23283 { 'aliquot_tag': 'ALQ_5d3c8acc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04749.WGS.N.hg38 C3L-04749 LSCC WGS blood_normal CPT0271470002 537b8662-9f16-462d-85f1-2517912d16f0_wgs_gdc_realn.bam 75596498859 BAM harmonized CPTAC3 948bad93-2b50-452c-bc20-fbaf4d175be2 96b49d70a9a93a1b53ddd87ee4a8e4e3 { 'aliquot_tag': 'ALQ_5d3c8acc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04749.WGS.T C3L-04749 LSCC WGS tumor CPT0271380006 CPT0271380006.WholeGenome.RP-2158.bam 23997719812 BAM aligned CPTAC3 24b1eb69-3e2f-49b0-82a4-354e03aa9ecb f343e6b2c044f4a144582108343a20ad { 'aliquot_tag': 'ALQ_c504e9bc', 'gdc_sample_type': 'Primary Tumor' } @@ -15804,16 +16760,16 @@ C3L-04757.miRNA-Seq.A C3L-04757 LUAD miRNA-Seq tissue_normal CPT0255080009 19072 C3L-04757.miRNA-Seq.A.hg38 C3L-04757 LUAD miRNA-Seq tissue_normal CPT0255080009 1a315b40-cf81-472d-9427-98dee79e74c0_mirnaseq_gdc_realn.bam 196918183 BAM harmonized CPTAC3 fc545074-8a8c-4239-992d-c4c70396dd61 245aacd5564721310172746d53693ea5 { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04757.miRNA-Seq.T C3L-04757 LUAD miRNA-Seq tumor CPT0255050009 190722_UNC31-K00269_0234_AH7VGTBBXY_TGACCA_S44_L007_R1_001.unaln.bam 200111670 BAM unaligned CPTAC3 29a78cce-fc3c-4437-824d-940fce1942e6 e4e6b737645a07dcadd628cd080f61d3 { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor' } C3L-04757.miRNA-Seq.T.hg38 C3L-04757 LUAD miRNA-Seq tumor CPT0255050009 a221a74e-d7fe-4bab-9c68-df41ea69c2dc_mirnaseq_gdc_realn.bam 215731392 BAM harmonized CPTAC3 1348404e-d449-4280-95f9-9c2ca885d336 46aef98444932475d971335c92fb8e16 { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04757.RNA-Seq.chimeric.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 03021bc4-e0fc-4264-9a0a-1ac2a8f71f09.rna_seq.chimeric.gdc_realn.bam 29794601 BAM chimeric harmonized CPTAC3 92e9f008-a066-4544-ac8e-42f87958633f 32a22cc6e61307c7f2a8478ac277db3f { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04757.RNA-Seq.chimeric.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 dd023365-3ab3-432b-b0cb-f25cc3a1bd31.rna_seq.chimeric.gdc_realn.bam 37365325 BAM chimeric harmonized CPTAC3 1115f10b-5218-4bf5-aece-f6fd905a3aa8 e866aa0a19127b6a58825ecf4999ec8d { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04757.RNA-Seq.genomic.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 03021bc4-e0fc-4264-9a0a-1ac2a8f71f09.rna_seq.genomic.gdc_realn.bam 9991454222 BAM genomic harmonized CPTAC3 38989c17-73b5-4466-b4c7-8a023219cdcc 7c7aa418c0ae0cc4993b997325da4795 { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04757.RNA-Seq.genomic.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 dd023365-3ab3-432b-b0cb-f25cc3a1bd31.rna_seq.genomic.gdc_realn.bam 9082599038 BAM genomic harmonized CPTAC3 571656f2-909e-4133-9ad2-f661f21f059d 19bfdeece006975477811f3e331ff474 { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04757.RNA-Seq.R1_L002.A C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 190607_UNC32-K00270_0178_AH773TBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3401806951 FASTQ R1_L002 unaligned CPTAC3 a14c65eb-d876-4222-884c-8c05b9831a1f 53f91dce6ca886e8eec1ac04a7470b34 { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04757.RNA-Seq.R1_L007.T C3L-04757 LUAD RNA-Seq tumor CPT0255050009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTGAACC-GCGTTGGA_S26_L007_R1_001.fastq.gz 4127971199 FASTQ R1_L007 unaligned CPTAC3 d6c9218c-2163-4bda-adec-e85ebb276e8b fb6dda7397752766f8e0b9c4abd5627a { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04757.RNA-Seq.R2_L002.A C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 190607_UNC32-K00270_0178_AH773TBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 3893884814 FASTQ R2_L002 unaligned CPTAC3 ddb13b87-04eb-4bd3-8edc-f9f053285664 170f85d1bbe7f19ec204a6c9e2c1b50e { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04757.RNA-Seq.R2_L007.T C3L-04757 LUAD RNA-Seq tumor CPT0255050009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTGAACC-GCGTTGGA_S26_L007_R2_001.fastq.gz 4618961349 FASTQ R2_L007 unaligned CPTAC3 e87b26c8-71d5-4ffe-81e1-d01202914df5 e621e3eaaaa08f538710c8b6084a09b6 { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04757.RNA-Seq.transcriptome.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 03021bc4-e0fc-4264-9a0a-1ac2a8f71f09.rna_seq.transcriptome.gdc_realn.bam 6479504967 BAM transcriptome harmonized CPTAC3 9d7c1a66-6236-4e2f-b1e0-2ee914a8e2d1 e30eebdd24be030fed7a03fb2acb979a { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04757.RNA-Seq.transcriptome.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 dd023365-3ab3-432b-b0cb-f25cc3a1bd31.rna_seq.transcriptome.gdc_realn.bam 9503783617 BAM transcriptome harmonized CPTAC3 c6a47c08-14a4-4395-a605-5201d74a0a19 c28e3ef53036a20a7d3b9d9bb4019914 { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04757.RNA-Seq.chimeric.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 5fc33ea3-5008-4b88-b672-8358213db14c.rna_seq.chimeric.gdc_realn.bam 29740257 BAM chimeric harmonized CPTAC3 6f8dface-5570-449a-b6bf-61834153a141 9e4211db8ae095f0bfacae9a17486152 { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04757.RNA-Seq.chimeric.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 16957f83-9cd7-4fe0-82db-e53094ca5650.rna_seq.chimeric.gdc_realn.bam 37375192 BAM chimeric harmonized CPTAC3 3bf19083-c74f-4033-8bb5-956033735cab f907f68c93df9b51e7a0f6437f26ffba { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04757.RNA-Seq.genomic.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 5fc33ea3-5008-4b88-b672-8358213db14c.rna_seq.genomic.gdc_realn.bam 9993317059 BAM genomic harmonized CPTAC3 ba026fe6-10d2-471a-86c7-b9a546fad096 ac33c6fc201ceb81191c38412dd0d6ae { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04757.RNA-Seq.genomic.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 16957f83-9cd7-4fe0-82db-e53094ca5650.rna_seq.genomic.gdc_realn.bam 9084569673 BAM genomic harmonized CPTAC3 e94fdeb6-a84f-4b80-bd17-04695862d3c1 0597c844410ce8c606e5bbe40c65c5b5 { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04757.RNA-Seq.R1_L002.A C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 190607_UNC32-K00270_0178_AH773TBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3401806951 FASTQ R1_L002 unaligned CPTAC3 a14c65eb-d876-4222-884c-8c05b9831a1f 53f91dce6ca886e8eec1ac04a7470b34 { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-04757.RNA-Seq.R1_L007.T C3L-04757 LUAD RNA-Seq tumor CPT0255050009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTGAACC-GCGTTGGA_S26_L007_R1_001.fastq.gz 4127971199 FASTQ R1_L007 unaligned CPTAC3 d6c9218c-2163-4bda-adec-e85ebb276e8b fb6dda7397752766f8e0b9c4abd5627a { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-04757.RNA-Seq.R2_L002.A C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 190607_UNC32-K00270_0178_AH773TBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 3893884814 FASTQ R2_L002 unaligned CPTAC3 ddb13b87-04eb-4bd3-8edc-f9f053285664 170f85d1bbe7f19ec204a6c9e2c1b50e { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-04757.RNA-Seq.R2_L007.T C3L-04757 LUAD RNA-Seq tumor CPT0255050009 190607_UNC32-K00270_0179_BH75W2BBXY_GGTGAACC-GCGTTGGA_S26_L007_R2_001.fastq.gz 4618961349 FASTQ R2_L007 unaligned CPTAC3 e87b26c8-71d5-4ffe-81e1-d01202914df5 e621e3eaaaa08f538710c8b6084a09b6 { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-04757.RNA-Seq.transcriptome.A.hg38 C3L-04757 LUAD RNA-Seq tissue_normal CPT0255080009 5fc33ea3-5008-4b88-b672-8358213db14c.rna_seq.transcriptome.gdc_realn.bam 7304283762 BAM transcriptome harmonized CPTAC3 0e17b885-e8ea-4c2c-aa11-f337331d05db aec9ca8aef2e1cf03247824a7f4db85d { 'aliquot_tag': 'ALQ_6545a5ed', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04757.RNA-Seq.transcriptome.T.hg38 C3L-04757 LUAD RNA-Seq tumor CPT0255050009 16957f83-9cd7-4fe0-82db-e53094ca5650.rna_seq.transcriptome.gdc_realn.bam 10666666212 BAM transcriptome harmonized CPTAC3 d5aca2c2-739a-4f98-af68-6bf30551447d 43738b211a4e6f50274bda885a34e728 { 'aliquot_tag': 'ALQ_9dd5615c', 'gdc_sample_type': 'Primary Tumor' } C3L-04757.WGS.N C3L-04757 LUAD WGS blood_normal CPT0255190002 CPT0255190002.WholeGenome.RP-1303.bam 66407153660 BAM aligned CPTAC3 14e3b249-1759-406d-9804-6abd38fb4e44 7caace0ee6c9cb91fc12c9152a67754f { 'aliquot_tag': 'ALQ_4ab8670', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04757.WGS.N.hg38 C3L-04757 LUAD WGS blood_normal CPT0255190002 1049f508-fe3c-4359-b14a-d38c47dcb7ba_wgs_gdc_realn.bam 97311162997 BAM harmonized CPTAC3 622c8bbc-4f6e-4368-aad0-015fc56a074c f10f6991e5fb267abc91f14f1e566a35 { 'aliquot_tag': 'ALQ_4ab8670', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04757.WGS.T C3L-04757 LUAD WGS tumor CPT0255050006 CPT0255050006.WholeGenome.RP-1303.bam 60442985525 BAM aligned CPTAC3 bfa14851-0bc7-49f2-b0c8-3e607ab6901c cbf3a796935d5815b98b34ff23416627 { 'aliquot_tag': 'ALQ_d6a7ccd', 'gdc_sample_type': 'Primary Tumor' } @@ -15832,16 +16788,16 @@ C3L-04759.miRNA-Seq.A C3L-04759 LUAD miRNA-Seq tissue_normal CPT0249940010 19071 C3L-04759.miRNA-Seq.A.hg38 C3L-04759 LUAD miRNA-Seq tissue_normal CPT0249940010 5dd48377-2a11-48eb-843b-6360f991312c_mirnaseq_gdc_realn.bam 218962378 BAM harmonized CPTAC3 7069b19e-0903-4fe1-bdcd-034e1291f2d5 71fd9675b3d13f24291a3e3df57fd004 { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04759.miRNA-Seq.T C3L-04759 LUAD miRNA-Seq tumor CPT0249890010 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTGAT_S1_L006_R1_001.unaln.bam 260982952 BAM unaligned CPTAC3 6fa305d2-5603-4641-982c-a6a15aca34f6 9d92ecc29090c5d39c69c374258a0c4f { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor' } C3L-04759.miRNA-Seq.T.hg38 C3L-04759 LUAD miRNA-Seq tumor CPT0249890010 9c0cb6e5-2e97-492c-b648-40a5bcc1891c_mirnaseq_gdc_realn.bam 290544593 BAM harmonized CPTAC3 3d39cf0c-7ca3-40a6-b09d-6e941accd06a 71fa174b170c50b2e571fe1e821d1ab8 { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04759.RNA-Seq.chimeric.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 aaa8212c-5501-4d6a-846c-eb31c34d75dd.rna_seq.chimeric.gdc_realn.bam 44263222 BAM chimeric harmonized CPTAC3 e55e1639-e026-423b-8751-d1368661355e cb8b132b22cda5a4c9729c19e524b844 { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04759.RNA-Seq.chimeric.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 227c9be2-7036-41b3-a78d-10dd434fd5ff.rna_seq.chimeric.gdc_realn.bam 52321048 BAM chimeric harmonized CPTAC3 776b73b8-47a9-4b06-937a-b503423e6f7d 88f8638f123ef99991b090b38ba3c016 { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04759.RNA-Seq.genomic.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 aaa8212c-5501-4d6a-846c-eb31c34d75dd.rna_seq.genomic.gdc_realn.bam 7279418623 BAM genomic harmonized CPTAC3 a850b377-5dff-4587-af80-5e999883d7ae 8cb49af50f084e0a0f029b5355bd5b29 { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04759.RNA-Seq.genomic.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 227c9be2-7036-41b3-a78d-10dd434fd5ff.rna_seq.genomic.gdc_realn.bam 9630563428 BAM genomic harmonized CPTAC3 6031fa82-8e7e-4ed1-b483-01c774c9387d dd8e5782d6478103ffad75a144e7cd91 { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04759.RNA-Seq.R1_L007.A C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 190614_UNC32-K00270_0182_BH7777BBXY_GTCGGAGC-GGTTATAA_S27_L007_R1_001.fastq.gz 3013248187 FASTQ R1_L007 unaligned CPTAC3 e9fa0ea6-afa8-4429-8324-8804424c2b97 9a553ac7634aff96e709c69b1d233d7a { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04759.RNA-Seq.R1_L007.T C3L-04759 LUAD RNA-Seq tumor CPT0249890010 190614_UNC32-K00270_0182_BH7777BBXY_ACTAAGAT-AACCGCGG_S26_L007_R1_001.fastq.gz 4031740242 FASTQ R1_L007 unaligned CPTAC3 d2c086bc-623f-4a23-9cb3-80c53b597f24 da57886c47c7db44a92936ef14e62aaa { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04759.RNA-Seq.R2_L007.A C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 190614_UNC32-K00270_0182_BH7777BBXY_GTCGGAGC-GGTTATAA_S27_L007_R2_001.fastq.gz 3386143896 FASTQ R2_L007 unaligned CPTAC3 6beda164-3c9d-4cda-8f28-d235c978c091 51db0b399df6faa998e554f0aa19b6c5 { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04759.RNA-Seq.R2_L007.T C3L-04759 LUAD RNA-Seq tumor CPT0249890010 190614_UNC32-K00270_0182_BH7777BBXY_ACTAAGAT-AACCGCGG_S26_L007_R2_001.fastq.gz 4397666777 FASTQ R2_L007 unaligned CPTAC3 848e757d-af1a-4b7a-b260-3551cbf21d80 b2fd6b25dbb0595622197b087ae52b05 { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04759.RNA-Seq.transcriptome.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 aaa8212c-5501-4d6a-846c-eb31c34d75dd.rna_seq.transcriptome.gdc_realn.bam 5727517857 BAM transcriptome harmonized CPTAC3 1b4fc8a4-271e-497a-9368-939a374d60f7 489afeb1a5dcb5e4e93bc7d5b0d97837 { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04759.RNA-Seq.transcriptome.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 227c9be2-7036-41b3-a78d-10dd434fd5ff.rna_seq.transcriptome.gdc_realn.bam 7799015776 BAM transcriptome harmonized CPTAC3 05ae0561-f766-4f1a-a603-d1f67a0e920d a28e9ac4e79b06e5eff7a97b95c7344f { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04759.RNA-Seq.chimeric.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 7f4dba12-c357-4d74-bb2e-e41ec4f4c01a.rna_seq.chimeric.gdc_realn.bam 44252433 BAM chimeric harmonized CPTAC3 8ade85d0-d054-4f2c-9764-45a7ce5b9c57 fd81b6e7a7dac20e13683b41783180d1 { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04759.RNA-Seq.chimeric.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 6ddcaa86-007c-4a38-a154-1278bde5aa8b.rna_seq.chimeric.gdc_realn.bam 52313101 BAM chimeric harmonized CPTAC3 002148fa-76d0-4150-b627-e57d2e34ef87 d7c75da7dbc9f926de2124d08435e27d { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04759.RNA-Seq.genomic.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 7f4dba12-c357-4d74-bb2e-e41ec4f4c01a.rna_seq.genomic.gdc_realn.bam 7279958837 BAM genomic harmonized CPTAC3 22893fce-2287-4d5a-9fcd-71062bbeb3c5 8e29d9911288eb990eb6095ddfacd439 { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04759.RNA-Seq.genomic.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 6ddcaa86-007c-4a38-a154-1278bde5aa8b.rna_seq.genomic.gdc_realn.bam 9631928475 BAM genomic harmonized CPTAC3 1ce7b50d-3d52-41b1-ac03-e0309f979484 722ef47430c24d0218bbff1e525b0036 { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04759.RNA-Seq.R1_L007.A C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 190614_UNC32-K00270_0182_BH7777BBXY_GTCGGAGC-GGTTATAA_S27_L007_R1_001.fastq.gz 3013248187 FASTQ R1_L007 unaligned CPTAC3 e9fa0ea6-afa8-4429-8324-8804424c2b97 9a553ac7634aff96e709c69b1d233d7a { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-04759.RNA-Seq.R1_L007.T C3L-04759 LUAD RNA-Seq tumor CPT0249890010 190614_UNC32-K00270_0182_BH7777BBXY_ACTAAGAT-AACCGCGG_S26_L007_R1_001.fastq.gz 4031740242 FASTQ R1_L007 unaligned CPTAC3 d2c086bc-623f-4a23-9cb3-80c53b597f24 da57886c47c7db44a92936ef14e62aaa { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-04759.RNA-Seq.R2_L007.A C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 190614_UNC32-K00270_0182_BH7777BBXY_GTCGGAGC-GGTTATAA_S27_L007_R2_001.fastq.gz 3386143896 FASTQ R2_L007 unaligned CPTAC3 6beda164-3c9d-4cda-8f28-d235c978c091 51db0b399df6faa998e554f0aa19b6c5 { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-04759.RNA-Seq.R2_L007.T C3L-04759 LUAD RNA-Seq tumor CPT0249890010 190614_UNC32-K00270_0182_BH7777BBXY_ACTAAGAT-AACCGCGG_S26_L007_R2_001.fastq.gz 4397666777 FASTQ R2_L007 unaligned CPTAC3 848e757d-af1a-4b7a-b260-3551cbf21d80 b2fd6b25dbb0595622197b087ae52b05 { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-04759.RNA-Seq.transcriptome.A.hg38 C3L-04759 LUAD RNA-Seq tissue_normal CPT0249940010 7f4dba12-c357-4d74-bb2e-e41ec4f4c01a.rna_seq.transcriptome.gdc_realn.bam 6491168167 BAM transcriptome harmonized CPTAC3 a69328c8-ace0-432b-9f83-fc4fb3e61ea7 4f637052ec0816bac99c4bc629dfaf0b { 'aliquot_tag': 'ALQ_ec77fa2b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04759.RNA-Seq.transcriptome.T.hg38 C3L-04759 LUAD RNA-Seq tumor CPT0249890010 6ddcaa86-007c-4a38-a154-1278bde5aa8b.rna_seq.transcriptome.gdc_realn.bam 8784251544 BAM transcriptome harmonized CPTAC3 e3dca406-6564-4a8d-ac66-92a105a78cc4 c6945c6ffe21984794cd8ea23eeb2d0d { 'aliquot_tag': 'ALQ_dfbbed3f', 'gdc_sample_type': 'Primary Tumor' } C3L-04759.WGS.N C3L-04759 LUAD WGS blood_normal CPT0250040002 CPT0250040002.WholeGenome.RP-1303.bam 75419038537 BAM aligned CPTAC3 e5fdb8ed-9aab-4c39-9b30-9be6a98b0506 1366bf92112d86611e2f8618edff8962 { 'aliquot_tag': 'ALQ_655fbec3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04759.WGS.N.hg38 C3L-04759 LUAD WGS blood_normal CPT0250040002 f0520344-6377-4462-862f-581f5f45a641_wgs_gdc_realn.bam 109840848525 BAM harmonized CPTAC3 44924c91-e101-4a04-bb4a-1f386d8ad368 c39abe055e2a2e80d4d4c0290ac0e2a6 { 'aliquot_tag': 'ALQ_655fbec3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04759.WGS.T C3L-04759 LUAD WGS tumor CPT0249890007 CPT0249890007.WholeGenome.RP-1303.bam 89079189823 BAM aligned CPTAC3 e6d0233c-6478-40a5-97eb-951a2bdebf4f 349fa2e194f00f39f66db913609d7453 { 'aliquot_tag': 'ALQ_58c449dd', 'gdc_sample_type': 'Primary Tumor' } @@ -15856,37 +16812,45 @@ C3L-04761.MethArray.Green.Tbm C3L-04761 AML Methylation Array tumor_bone_marrow C3L-04761.MethArray.Red.Tbm C3L-04761 AML Methylation Array tumor_bone_marrow CPT0302830002 205555390128_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 1c32839b-7ade-4084-ab77-3306012f70cd 00b972952c3032fd218167967fa3dcaf { 'aliquot_tag': 'ALQ_f328ebb0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04761.miRNA-Seq.Tbm C3L-04761 AML miRNA-Seq tumor_bone_marrow CPT0302840002 210331_UNC31-K00269_0297_AHKCFKBBXY_CACCGG_S40_L008_R1_001.unaln.bam 276727312 BAM unaligned CPTAC3 deb54249-aec2-4590-a4ca-cbef26368ccb 20a897b8b4f259dcbb2296688153b4c8 { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04761.miRNA-Seq.Tbm.hg38 C3L-04761 AML miRNA-Seq tumor_bone_marrow CPT0302840002 7918e895-5222-4075-97e4-1f958c46215f_mirnaseq_gdc_realn.bam 300180783 BAM harmonized CPTAC3 74981bb8-840d-48fd-96e5-5508f156cdd5 82a5f1709a2b5910f48f62da427954a7 { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04761.RNA-Seq.chimeric.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.chimeric.gdc_realn.bam 162879915 BAM chimeric harmonized CPTAC3 380339db-2a90-4794-809f-0343fd48e4b1 ba44035899af3ca56b31f30dc35c29f8 { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04761.RNA-Seq.genomic.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.genomic.gdc_realn.bam 7585660971 BAM genomic harmonized CPTAC3 b8e62bb5-daba-4091-8be0-8b11dea64628 b83e44920fb1a8eb5f38c89ea39ef649 { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04761.RNA-Seq.R1_L001.Tbm C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 210319_UNC31-K00269_0296_AHKT37BBXY_CATAGAGT-TGCCACCA_S2_L001_R1_001.fastq.gz 3682020335 FASTQ R1_L001 unaligned CPTAC3 f15b85cd-4f59-420d-b186-8cc631e57b4b 6da78c1e4c5a07ac100a59181b6ae2e8 { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04761.RNA-Seq.R2_L001.Tbm C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 210319_UNC31-K00269_0296_AHKT37BBXY_CATAGAGT-TGCCACCA_S2_L001_R2_001.fastq.gz 4158910002 FASTQ R2_L001 unaligned CPTAC3 2986dc61-29bb-4478-9a20-d37b350606cd 36646a731ed3ab23d3aa6ec1cac0ab9f { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04761.RNA-Seq.transcriptome.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.transcriptome.gdc_realn.bam 9359104723 BAM transcriptome harmonized CPTAC3 68428c43-5ead-456b-b79a-0daa94505320 50208d56c9fc0f87f3282f2a37404f79 { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04761.RNA-Seq.chimeric.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.chimeric.gdc_realn.bam 162879915 BAM chimeric harmonized CPTAC3 203cff96-0499-45f6-bbcd-290c266d5573 ba44035899af3ca56b31f30dc35c29f8 { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04761.RNA-Seq.genomic.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.genomic.gdc_realn.bam 7585660971 BAM genomic harmonized CPTAC3 111f4051-83dc-4226-a909-2a29c7f205ce b83e44920fb1a8eb5f38c89ea39ef649 { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04761.RNA-Seq.R1_L001.Tbm C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 210319_UNC31-K00269_0296_AHKT37BBXY_CATAGAGT-TGCCACCA_S2_L001_R1_001.fastq.gz 3682020335 FASTQ R1_L001 unaligned CPTAC3 f15b85cd-4f59-420d-b186-8cc631e57b4b 6da78c1e4c5a07ac100a59181b6ae2e8 { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-04761.RNA-Seq.R2_L001.Tbm C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 210319_UNC31-K00269_0296_AHKT37BBXY_CATAGAGT-TGCCACCA_S2_L001_R2_001.fastq.gz 4158910002 FASTQ R2_L001 unaligned CPTAC3 2986dc61-29bb-4478-9a20-d37b350606cd 36646a731ed3ab23d3aa6ec1cac0ab9f { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-04761.RNA-Seq.transcriptome.Tbm.hg38 C3L-04761 AML RNA-Seq tumor_bone_marrow CPT0302840002 6314af0e-9b28-4b73-a34a-c3125a77a77b.rna_seq.transcriptome.gdc_realn.bam 9359104723 BAM transcriptome harmonized CPTAC3 d93a783d-6abe-4d8e-bd45-5b3eb51f9ddf 50208d56c9fc0f87f3282f2a37404f79 { 'aliquot_tag': 'ALQ_410837a0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04761.WGS.Nbc C3L-04761 AML WGS buccal_normal CPT0302950003 CPT0302950003.WholeGenome.RP-2158.bam 55420012058 BAM aligned CPTAC3 452eb9dc-89fd-401f-a389-3ea2a782a488 364b0b5db7839af191ddc00d565026c1 { 'aliquot_tag': 'ALQ_c033fd23', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04761.WGS.Nbc.hg38 C3L-04761 AML WGS buccal_normal CPT0302950003 4e623177-90f3-4f7c-ab2e-63ebbe66eed6_wgs_gdc_realn.bam 166004693494 BAM harmonized CPTAC3 7b5193f4-61e1-40fd-97f0-eccf74fa790c ce8a586ff53802b17e304d4252a7d20b { 'aliquot_tag': 'ALQ_c033fd23', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04761.WGS.Tbm C3L-04761 AML WGS tumor_bone_marrow CPT0302830002 CPT0302830002.WholeGenome.RP-2158.bam 48791746622 BAM aligned CPTAC3 0856e8b1-df94-4a06-a626-5000dc337cd5 7cd92d159ddeeb9162f19ce59361230f { 'aliquot_tag': 'ALQ_f328ebb0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04761.WGS.Tbm.hg38 C3L-04761 AML WGS tumor_bone_marrow CPT0302830002 7ef7be1c-8a5f-406b-8dcb-596b92ac40b7_wgs_gdc_realn.bam 140037712642 BAM harmonized CPTAC3 3d065aa6-d8f3-42d3-b435-63d257e95504 89d53348addc1819079af2d0bf14c95c { 'aliquot_tag': 'ALQ_f328ebb0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04761.WXS.Nbc C3L-04761 AML WXS buccal_normal CPT0302950003 CPT0302950003.WholeExome.RP-1303.bam 15987418999 BAM aligned CPTAC3 1821e3aa-e16a-4a89-bda7-089cda0957b7 07debb4adbe200e9f7dc84d77217157c { 'aliquot_tag': 'ALQ_c033fd23', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04761.WXS.Nbc.hg38 C3L-04761 AML WXS buccal_normal CPT0302950003 4e623177-90f3-4f7c-ab2e-63ebbe66eed6_wxs_gdc_realn.bam 22169092016 BAM harmonized CPTAC3 a5e9a55d-077a-474e-9e46-634e8a9e1090 dae268c19e8036d88c7085048b25d4db { 'aliquot_tag': 'ALQ_c033fd23', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04761.WXS.Tbm C3L-04761 AML WXS tumor_bone_marrow CPT0302830002 CPT0302830002.WholeExome.RP-1303.bam 22552836245 BAM aligned CPTAC3 1ff262f2-213a-45b5-88cc-8931650733d1 96daf50bd81a775f41a148cec2eddba6 { 'aliquot_tag': 'ALQ_f328ebb0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04761.WXS.Tbm.hg38 C3L-04761 AML WXS tumor_bone_marrow CPT0302830002 7ef7be1c-8a5f-406b-8dcb-596b92ac40b7_wxs_gdc_realn.bam 31278135701 BAM harmonized CPTAC3 b47e314b-a40f-4a49-95b7-ae1bf7674558 192c5c3c27f5db44526ad0ee2d048b43 { 'aliquot_tag': 'ALQ_f328ebb0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04763.MethArray.Green.Tbm C3L-04763 AML Methylation Array tumor_bone_marrow CPT0303110002 205555380136_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6b196c75-c182-4b3e-9d84-642753a2dd72 333e14584bbbe66d9bd61ab3a6e80e37 { 'aliquot_tag': 'ALQ_890e2ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04763.MethArray.Red.Tbm C3L-04763 AML Methylation Array tumor_bone_marrow CPT0303110002 205555380136_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 e5516d6b-f3ad-4e9f-a4d2-2affc37ba969 a8583f177d584dbe3286decccce2ebd0 { 'aliquot_tag': 'ALQ_890e2ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04763.miRNA-Seq.Tbm C3L-04763 AML miRNA-Seq tumor_bone_marrow CPT0303120002 210331_UNC31-K00269_0297_AHKCFKBBXY_CACTCA_S42_L008_R1_001.unaln.bam 138877284 BAM unaligned CPTAC3 d9cdec1d-8e02-453c-a957-cfe4b47c9819 5d3c2c8038d89e390c70b2eca012f09d { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04763.miRNA-Seq.Tbm.hg38 C3L-04763 AML miRNA-Seq tumor_bone_marrow CPT0303120002 01807494-68bb-4dd9-850c-f6d219938a50_mirnaseq_gdc_realn.bam 150347625 BAM harmonized CPTAC3 f393c9d0-e04e-4b18-a030-74d39edfe739 381c00d8e00a5999b3d493ea3e3de21d { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04763.RNA-Seq.chimeric.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 3f4751d7-f9c7-407b-9a02-0c5b770b8090.rna_seq.chimeric.gdc_realn.bam 205298250 BAM chimeric harmonized CPTAC3 e240d35b-82b5-4bf8-b878-4c51bbc0ae3e b1954c7856a0f1c7ccdf1ec6a01af15a { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04763.RNA-Seq.genomic.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 3f4751d7-f9c7-407b-9a02-0c5b770b8090.rna_seq.genomic.gdc_realn.bam 7259547148 BAM genomic harmonized CPTAC3 37284a67-3100-4769-99fb-9b6afbd8f92a 4d489e0b50f3e2466b920110b8d39a99 { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04763.RNA-Seq.R1_L001.Tbm C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGAATAT-TCTCATTC_S3_L001_R1_001.fastq.gz 3438040411 FASTQ R1_L001 unaligned CPTAC3 c3a9b183-700e-4ae3-adc2-0ffade837bf0 786e852b7841d806480bc2000671308d { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04763.RNA-Seq.R2_L001.Tbm C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGAATAT-TCTCATTC_S3_L001_R2_001.fastq.gz 3810935126 FASTQ R2_L001 unaligned CPTAC3 ab31f876-7f37-41c3-960e-43702282f5be cc9a6cf3dd2b0625e8a214ba8a1d8eef { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04763.RNA-Seq.transcriptome.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 3f4751d7-f9c7-407b-9a02-0c5b770b8090.rna_seq.transcriptome.gdc_realn.bam 6085319960 BAM transcriptome harmonized CPTAC3 5f44b7b8-96bc-4661-8be9-03f0fb801a4a 5a169f943071095b8b9ffffebfb3c79e { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04763.RNA-Seq.chimeric.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 55935684-41ca-4ec6-904a-f747c91dd0de.rna_seq.chimeric.gdc_realn.bam 205297609 BAM chimeric harmonized CPTAC3 cf466dea-fca0-4326-9c48-5d6a07c88027 b34be18ec55c289fc1e6697de22f07af { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04763.RNA-Seq.genomic.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 55935684-41ca-4ec6-904a-f747c91dd0de.rna_seq.genomic.gdc_realn.bam 7265645962 BAM genomic harmonized CPTAC3 42b3ad09-8999-4847-9167-00c832aa5f70 54b9674d166ec4425634d6cd4b368d07 { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04763.RNA-Seq.R1_L001.Tbm C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGAATAT-TCTCATTC_S3_L001_R1_001.fastq.gz 3438040411 FASTQ R1_L001 unaligned CPTAC3 c3a9b183-700e-4ae3-adc2-0ffade837bf0 786e852b7841d806480bc2000671308d { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-04763.RNA-Seq.R2_L001.Tbm C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGAATAT-TCTCATTC_S3_L001_R2_001.fastq.gz 3810935126 FASTQ R2_L001 unaligned CPTAC3 ab31f876-7f37-41c3-960e-43702282f5be cc9a6cf3dd2b0625e8a214ba8a1d8eef { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-04763.RNA-Seq.transcriptome.Tbm.hg38 C3L-04763 AML RNA-Seq tumor_bone_marrow CPT0303120002 55935684-41ca-4ec6-904a-f747c91dd0de.rna_seq.transcriptome.gdc_realn.bam 6968798058 BAM transcriptome harmonized CPTAC3 b39b158f-f301-4222-8854-3bbe03a945ee 356b03577ab48ccfc8274367a43ed563 { 'aliquot_tag': 'ALQ_4f30987c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04763.WGS.Nbc C3L-04763 AML WGS buccal_normal CPT0303300001 CPT0303300001.WholeGenome.RP-2158.bam 50446856202 BAM aligned CPTAC3 f2517931-f731-45d6-9c36-78f975b2e353 0649a2ec90c3e9ce929740d615625a2b { 'aliquot_tag': 'ALQ_e1313bad', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04763.WGS.Nbc.hg38 C3L-04763 AML WGS buccal_normal CPT0303300001 326fbc29-721b-40cb-b508-a0256dc1cd08_wgs_gdc_realn.bam 156462698691 BAM harmonized CPTAC3 14184470-cfa5-412b-8fd5-87bc5d88068f e0a3ecb224dbe434040753e831192df6 { 'aliquot_tag': 'ALQ_e1313bad', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04763.WGS.Tbm C3L-04763 AML WGS tumor_bone_marrow CPT0303110002 CPT0303110002.WholeGenome.RP-2158.bam 46925630457 BAM aligned CPTAC3 a35c2354-aa04-4d12-9564-27a55990b864 b721e82a92ffa854a2162903efcb76ad { 'aliquot_tag': 'ALQ_890e2ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04763.WGS.Tbm.hg38 C3L-04763 AML WGS tumor_bone_marrow CPT0303110002 cc6720e2-8526-42f4-b384-e5e63f62aae5_wgs_gdc_realn.bam 141648633992 BAM harmonized CPTAC3 5b2dc5b0-dc90-4b22-8713-041c60b5ca3f 83d5b515ea6ec7158f294494adb81b13 { 'aliquot_tag': 'ALQ_890e2ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04763.WXS.Nbc C3L-04763 AML WXS buccal_normal CPT0303300001 CPT0303300001.WholeExome.RP-1303.bam 29577172174 BAM aligned CPTAC3 d0fd167a-07b4-4da0-bd06-60fe92fbc5c1 eef642e962a3d6eaa7dc792f6d30da8b { 'aliquot_tag': 'ALQ_e1313bad', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04763.WXS.Nbc.hg38 C3L-04763 AML WXS buccal_normal CPT0303300001 326fbc29-721b-40cb-b508-a0256dc1cd08_wxs_gdc_realn.bam 39394401609 BAM harmonized CPTAC3 ba2e573c-d870-40df-9413-ab7dd13caa74 c56950156e70b85a74de615cb82b649b { 'aliquot_tag': 'ALQ_e1313bad', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04763.WXS.Tbm C3L-04763 AML WXS tumor_bone_marrow CPT0303110002 CPT0303110002.WholeExome.RP-1303.bam 23630053840 BAM aligned CPTAC3 feb43a47-9e63-4fee-97d6-012a7853f0c3 795dc07d5b29864fb6ef31c6a37942ba { 'aliquot_tag': 'ALQ_890e2ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04763.WXS.Tbm.hg38 C3L-04763 AML WXS tumor_bone_marrow CPT0303110002 cc6720e2-8526-42f4-b384-e5e63f62aae5_wxs_gdc_realn.bam 32626803814 BAM harmonized CPTAC3 a341645d-479f-43f0-b895-33ae1051a6fd b76b7069e5cf5def39480a3ad0e2d600 { 'aliquot_tag': 'ALQ_890e2ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04764.MethArray.Green.Tbm C3L-04764 AML Methylation Array tumor_bone_marrow CPT0260550002 203273630258_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c1b1a611-651b-4fbc-919a-7ac124c9a255 6fe5357de35f785e3c38529209748ad5 { 'aliquot_tag': 'ALQ_867d0123', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04764.MethArray.Red.Tbm C3L-04764 AML Methylation Array tumor_bone_marrow CPT0260550002 203273630258_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 d1a9af49-f7ed-454b-a83c-ea01e1fa589a 47ff0a40db8f2b5140a39158b93d5ac8 { 'aliquot_tag': 'ALQ_867d0123', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04764.miRNA-Seq.Tbm C3L-04764 AML miRNA-Seq tumor_bone_marrow CPT0260570002 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGAGC_S26_L002_R1_001.unaln.bam 178127670 BAM unaligned CPTAC3 51dbd00a-d9d5-48c2-a741-1a0a7f463d6a 898801144ba882eff845eac5d58a7d2c { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04764.miRNA-Seq.Tbm.hg38 C3L-04764 AML miRNA-Seq tumor_bone_marrow CPT0260570002 3983a953-59bd-4813-9a2c-aa067430def9_mirnaseq_gdc_realn.bam 191415974 BAM harmonized CPTAC3 a18bf2f5-5d19-4b0c-90cf-90a7e53c66a4 dc8236479d12d10691e81a7c912e9be3 { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04764.RNA-Seq.chimeric.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 a0ac96c8-8ec0-45ce-a4d0-91e559c49a2b.rna_seq.chimeric.gdc_realn.bam 38686557 BAM chimeric harmonized CPTAC3 5b629a3d-1dae-4b55-b90b-abf9b1e6d929 d58037c3e5cd817d00cdef4f5a2c1808 { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04764.RNA-Seq.genomic.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 a0ac96c8-8ec0-45ce-a4d0-91e559c49a2b.rna_seq.genomic.gdc_realn.bam 8905642511 BAM genomic harmonized CPTAC3 e1719303-21b4-466f-afbd-dfad918ca955 3abe46b7ca69a87c331fe5210cd41159 { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04764.RNA-Seq.R1_L006.Tbm C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 190426_UNC32-K00270_0167_AH7CK7BBXY_GTCGGAGC-GGTTATAA_S20_L006_R1_001.fastq.gz 4139086776 FASTQ R1_L006 unaligned CPTAC3 370f0a2e-f908-4c28-9686-1f126fd58771 43a4e8a4a6ed0f1e7b986b434ee915c4 { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04764.RNA-Seq.R2_L006.Tbm C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 190426_UNC32-K00270_0167_AH7CK7BBXY_GTCGGAGC-GGTTATAA_S20_L006_R2_001.fastq.gz 4823140430 FASTQ R2_L006 unaligned CPTAC3 d253f323-45f9-4ceb-95d3-ac7d264bc1f8 1a88bd75157897cbee19cbbc1d3278ae { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04764.RNA-Seq.transcriptome.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 a0ac96c8-8ec0-45ce-a4d0-91e559c49a2b.rna_seq.transcriptome.gdc_realn.bam 8790416341 BAM transcriptome harmonized CPTAC3 ea959946-4410-4ffe-aa89-566c280a0e09 0caef174ce83ecdaa6373bad495e30d1 { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04764.RNA-Seq.chimeric.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 db250a72-9313-47ca-b621-66e7e6b05ed9.rna_seq.chimeric.gdc_realn.bam 38677727 BAM chimeric harmonized CPTAC3 08077f96-7e9a-4fbe-98ce-5cc3e676a600 0f359b392ee3478cb69a8a8aff7c12bd { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04764.RNA-Seq.genomic.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 db250a72-9313-47ca-b621-66e7e6b05ed9.rna_seq.genomic.gdc_realn.bam 8906663385 BAM genomic harmonized CPTAC3 0b7b6ba6-cd08-4c35-89d6-4163aa37dc44 3923435fb3fcee45a22694e1be3de0a6 { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04764.RNA-Seq.R1_L006.Tbm C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 190426_UNC32-K00270_0167_AH7CK7BBXY_GTCGGAGC-GGTTATAA_S20_L006_R1_001.fastq.gz 4139086776 FASTQ R1_L006 unaligned CPTAC3 370f0a2e-f908-4c28-9686-1f126fd58771 43a4e8a4a6ed0f1e7b986b434ee915c4 { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-04764.RNA-Seq.R2_L006.Tbm C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 190426_UNC32-K00270_0167_AH7CK7BBXY_GTCGGAGC-GGTTATAA_S20_L006_R2_001.fastq.gz 4823140430 FASTQ R2_L006 unaligned CPTAC3 d253f323-45f9-4ceb-95d3-ac7d264bc1f8 1a88bd75157897cbee19cbbc1d3278ae { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-04764.RNA-Seq.transcriptome.Tbm.hg38 C3L-04764 AML RNA-Seq tumor_bone_marrow CPT0260570002 db250a72-9313-47ca-b621-66e7e6b05ed9.rna_seq.transcriptome.gdc_realn.bam 9981907929 BAM transcriptome harmonized CPTAC3 5a2ab5fb-630d-4876-9433-925d7e1f3308 554d3e667f0fdf4fecd53015d92696fa { 'aliquot_tag': 'ALQ_fcbd5243', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04764.WGS.Tbm C3L-04764 AML WGS tumor_bone_marrow CPT0260550002 CPT0260550002.WholeGenome.RP-1303.bam 63676234713 BAM aligned CPTAC3 1a4524b1-eba1-4d66-a4b1-aea83eeb6aed f692db7fafc32a518e85ef7642ddf97c { 'aliquot_tag': 'ALQ_867d0123', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04764.WGS.Tbm.hg38 C3L-04764 AML WGS tumor_bone_marrow CPT0260550002 0b9c762a-bb10-4cba-9fb0-d88c404bd01f_wgs_gdc_realn.bam 91925049877 BAM harmonized CPTAC3 410d616d-0780-4fac-9b2e-d3da697f3e9f e0911074e22bdf5fe165b0ccfd7205da { 'aliquot_tag': 'ALQ_867d0123', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04764.WXS.Nbc C3L-04764 AML WXS buccal_normal CPT0260540003 CPT0260540003.WholeExome.RP-1303.bam 26076194544 BAM aligned CPTAC3 d5febe10-212b-44cc-98cd-abbf3be0ecd6 2689fd924e08cc9fc2288211458f12e1 { 'aliquot_tag': 'ALQ_cc1a1805', 'gdc_sample_type': 'Buccal Cell Normal' } @@ -15897,11 +16861,11 @@ C3L-04766.MethArray.Green.Tbm C3L-04766 AML Methylation Array tumor_bone_marrow C3L-04766.MethArray.Red.Tbm C3L-04766 AML Methylation Array tumor_bone_marrow CPT0260660002 203561620159_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 58c0798e-267f-4323-971d-d945197d5e92 3b89c68ccd010d8643b00e6c8eea78bb { 'aliquot_tag': 'ALQ_4749095d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04766.miRNA-Seq.Tbm C3L-04766 AML miRNA-Seq tumor_bone_marrow CPT0260670002 190508_UNC31-K00269_0215_BH7FYKBBXY_CGATGT_S2_L003_R1_001.unaln.bam 173028735 BAM unaligned CPTAC3 7dc82f1b-d118-4e31-8dba-38f216c35307 b951847483fee06bf82bf1358080a8f2 { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04766.miRNA-Seq.Tbm.hg38 C3L-04766 AML miRNA-Seq tumor_bone_marrow CPT0260670002 a643812b-86a0-4ba9-854f-cbda9e79c95d_mirnaseq_gdc_realn.bam 190923456 BAM harmonized CPTAC3 6ea990cc-4585-4985-9c6e-8b0adcff8ee4 046d93cef9fb8708464438660785839b { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04766.RNA-Seq.chimeric.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 54c02f07-4838-4cfb-9fc2-7826ebf5f00c.rna_seq.chimeric.gdc_realn.bam 37096642 BAM chimeric harmonized CPTAC3 f7af7202-1f97-4d4e-8419-c85eb037035e 1d70bdcaf93adb080e978aabc24941e1 { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04766.RNA-Seq.genomic.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 54c02f07-4838-4cfb-9fc2-7826ebf5f00c.rna_seq.genomic.gdc_realn.bam 7947895273 BAM genomic harmonized CPTAC3 f46ef4e4-142e-4748-923d-efb82a321856 11a7baf1afb09e2130cd66df2ec4a523 { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04766.RNA-Seq.R1_L002.Tbm C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCTCTA-GCTCCGAC_S6_L002_R1_001.fastq.gz 3668817528 FASTQ R1_L002 unaligned CPTAC3 e837050d-a525-4a5e-be38-9adaf277624c 63124561b78e3fd1f25e6af43f599682 { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04766.RNA-Seq.R2_L002.Tbm C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCTCTA-GCTCCGAC_S6_L002_R2_001.fastq.gz 4178937187 FASTQ R2_L002 unaligned CPTAC3 38f58c9e-8d1b-4221-9c7d-80b4c1721651 e0374d2ad7802b79e067feb74da52de2 { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04766.RNA-Seq.transcriptome.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 54c02f07-4838-4cfb-9fc2-7826ebf5f00c.rna_seq.transcriptome.gdc_realn.bam 6337921682 BAM transcriptome harmonized CPTAC3 8dd5ad66-dab1-44ef-82fb-ac1ec956bace d8077b9f38cc4ecdcb02925b2a3b1241 { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04766.RNA-Seq.chimeric.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 5874c5c6-a552-4e8e-a31a-4eddc0c4f793.rna_seq.chimeric.gdc_realn.bam 37089263 BAM chimeric harmonized CPTAC3 b61458c2-0a4a-4fd9-a4a2-927c3da559fd 6d9145819b1789b25b73274fce0edf39 { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04766.RNA-Seq.genomic.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 5874c5c6-a552-4e8e-a31a-4eddc0c4f793.rna_seq.genomic.gdc_realn.bam 7948679179 BAM genomic harmonized CPTAC3 fecb3f77-497c-459d-9b8a-080fc358e538 e6186f6528817a4b42aac09fc85dddaa { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04766.RNA-Seq.R1_L002.Tbm C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCTCTA-GCTCCGAC_S6_L002_R1_001.fastq.gz 3668817528 FASTQ R1_L002 unaligned CPTAC3 e837050d-a525-4a5e-be38-9adaf277624c 63124561b78e3fd1f25e6af43f599682 { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-04766.RNA-Seq.R2_L002.Tbm C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCTCTA-GCTCCGAC_S6_L002_R2_001.fastq.gz 4178937187 FASTQ R2_L002 unaligned CPTAC3 38f58c9e-8d1b-4221-9c7d-80b4c1721651 e0374d2ad7802b79e067feb74da52de2 { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-04766.RNA-Seq.transcriptome.Tbm.hg38 C3L-04766 AML RNA-Seq tumor_bone_marrow CPT0260670002 5874c5c6-a552-4e8e-a31a-4eddc0c4f793.rna_seq.transcriptome.gdc_realn.bam 7239737987 BAM transcriptome harmonized CPTAC3 875847c5-d6af-45f4-8d22-39fce2480e87 0f5435ce0d685e1f5170f723a331967a { 'aliquot_tag': 'ALQ_7a2920ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04766.WGS.Nbc C3L-04766 AML WGS buccal_normal CPT0260650002 CPT0260650002.WholeGenome.RP-1303.bam 67925942595 BAM aligned CPTAC3 b92b8b7a-87f9-4b13-9e55-f97aa43b0a06 a1ffde81c9aac3a09fa07f4757513789 { 'aliquot_tag': 'ALQ_e9738d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04766.WGS.Nbc.hg38 C3L-04766 AML WGS buccal_normal CPT0260650002 7522fb52-aa98-4b9c-a501-ead834f04edc_wgs_gdc_realn.bam 104402562872 BAM harmonized CPTAC3 86308fbb-f98a-4d01-92c0-dcc81d98f203 85f57fcc491540de13b149a21e14a5a4 { 'aliquot_tag': 'ALQ_e9738d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04766.WGS.Tbm C3L-04766 AML WGS tumor_bone_marrow CPT0260660002 CPT0260660002.WholeGenome.RP-1303.bam 58241138278 BAM aligned CPTAC3 2dbfd9c7-0b99-4709-a901-576b0ee0b46c 4d65cbe5f529a87bc1f4d4f6e026e1ed { 'aliquot_tag': 'ALQ_4749095d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } @@ -15914,11 +16878,11 @@ C3L-04767.MethArray.Green.Tbm C3L-04767 AML Methylation Array tumor_bone_marrow C3L-04767.MethArray.Red.Tbm C3L-04767 AML Methylation Array tumor_bone_marrow CPT0260760002 203273630048_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 d3b7f4a2-2cac-4b53-b11c-6f768812287f 7ef690761f2eb2134d1ec25a872f7fbb { 'aliquot_tag': 'ALQ_8c15daf8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04767.miRNA-Seq.Tbm C3L-04767 AML miRNA-Seq tumor_bone_marrow CPT0260770002 190508_UNC31-K00269_0215_BH7FYKBBXY_TTAGGC_S3_L003_R1_001.unaln.bam 246884358 BAM unaligned CPTAC3 444c5c4b-7482-409c-92d5-931a4dc5d201 110f214597c6e02267618fd2e56675e4 { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04767.miRNA-Seq.Tbm.hg38 C3L-04767 AML miRNA-Seq tumor_bone_marrow CPT0260770002 ef87942c-3c82-4825-9b65-9da44fba501b_mirnaseq_gdc_realn.bam 282682418 BAM harmonized CPTAC3 0d563733-1785-4f82-b37a-a429a262b212 4a0144f2538ff7edcc7dc07740658c67 { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04767.RNA-Seq.chimeric.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 1ca7ee3d-ad8a-4a8a-9008-9eea39e23435.rna_seq.chimeric.gdc_realn.bam 42709359 BAM chimeric harmonized CPTAC3 3910daba-3c52-4771-82ae-4c6b2b89dd5f bb010a28c349d5ba87b82d0e1ad29130 { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04767.RNA-Seq.genomic.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 1ca7ee3d-ad8a-4a8a-9008-9eea39e23435.rna_seq.genomic.gdc_realn.bam 8519251927 BAM genomic harmonized CPTAC3 14160952-e1e3-4ae6-9e3a-6b90d553fbff d60c74bc01cbd3652450cd534f44844b { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04767.RNA-Seq.R1_L002.Tbm C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 190604_UNC32-K00270_0177_AH7F5VBBXY_AACAGGTT-ATACCAAG_S8_L002_R1_001.fastq.gz 4188033393 FASTQ R1_L002 unaligned CPTAC3 92bee0be-2e91-47aa-9229-fced2412844b 9053cb50676d32bd29c6dd0448f6e6df { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04767.RNA-Seq.R2_L002.Tbm C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 190604_UNC32-K00270_0177_AH7F5VBBXY_AACAGGTT-ATACCAAG_S8_L002_R2_001.fastq.gz 4694329276 FASTQ R2_L002 unaligned CPTAC3 5016063a-f737-41ec-b266-428eb7eb6c95 efecfed8614eee85e4f033d0e0a67430 { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-04767.RNA-Seq.transcriptome.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 1ca7ee3d-ad8a-4a8a-9008-9eea39e23435.rna_seq.transcriptome.gdc_realn.bam 6843585124 BAM transcriptome harmonized CPTAC3 dad4413d-ab02-45d8-a065-7b82d7baf338 ca1a4382e65b14dde358e56f45b59c40 { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04767.RNA-Seq.chimeric.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 a16df906-fb2b-4868-abc0-5980d0f95db7.rna_seq.chimeric.gdc_realn.bam 42692397 BAM chimeric harmonized CPTAC3 ad17399d-9f9d-475c-b4b4-dd38b2543a50 953fd60e4f2e7a1b695ba3a2d85947f5 { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04767.RNA-Seq.genomic.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 a16df906-fb2b-4868-abc0-5980d0f95db7.rna_seq.genomic.gdc_realn.bam 8519618467 BAM genomic harmonized CPTAC3 98857b7e-d2e6-40b0-bb7a-ffc14c58fbea e8dbc9d90350c7eb52133f6f30868eca { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-04767.RNA-Seq.R1_L002.Tbm C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 190604_UNC32-K00270_0177_AH7F5VBBXY_AACAGGTT-ATACCAAG_S8_L002_R1_001.fastq.gz 4188033393 FASTQ R1_L002 unaligned CPTAC3 92bee0be-2e91-47aa-9229-fced2412844b 9053cb50676d32bd29c6dd0448f6e6df { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-04767.RNA-Seq.R2_L002.Tbm C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 190604_UNC32-K00270_0177_AH7F5VBBXY_AACAGGTT-ATACCAAG_S8_L002_R2_001.fastq.gz 4694329276 FASTQ R2_L002 unaligned CPTAC3 5016063a-f737-41ec-b266-428eb7eb6c95 efecfed8614eee85e4f033d0e0a67430 { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-04767.RNA-Seq.transcriptome.Tbm.hg38 C3L-04767 AML RNA-Seq tumor_bone_marrow CPT0260770002 a16df906-fb2b-4868-abc0-5980d0f95db7.rna_seq.transcriptome.gdc_realn.bam 7831070410 BAM transcriptome harmonized CPTAC3 665615ba-246c-428b-a2a1-7ff891a1a4a0 eb1065d6e09fbfa4e7ac425f2b10ffc9 { 'aliquot_tag': 'ALQ_b175f348', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04767.WGS.Tbm C3L-04767 AML WGS tumor_bone_marrow CPT0260760002 CPT0260760002.WholeGenome.RP-1303.bam 61097518367 BAM aligned CPTAC3 6fd28ed6-a485-4b64-8ecb-2ae3b08a3c1e 19e493006a5dcc2826c1d7cdfff98718 { 'aliquot_tag': 'ALQ_8c15daf8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04767.WGS.Tbm.hg38 C3L-04767 AML WGS tumor_bone_marrow CPT0260760002 0eb42c6e-f668-482b-8dc5-8390fd97a45f_wgs_gdc_realn.bam 90069015958 BAM harmonized CPTAC3 b8e7bafc-db87-4aef-a154-d5a065dcc994 32c49540a7ba8ca4f62114fba4e428b6 { 'aliquot_tag': 'ALQ_8c15daf8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-04767.WXS.Nbc C3L-04767 AML WXS buccal_normal CPT0260750003 CPT0260750003.WholeExome.RP-1303.bam 18042532462 BAM aligned CPTAC3 db49fd10-7092-4a5d-896f-e4504d263fa8 fd70b9a5e6521b71702bcb955eaca89c { 'aliquot_tag': 'ALQ_bcb290be', 'gdc_sample_type': 'Buccal Cell Normal' } @@ -15933,16 +16897,16 @@ C3L-04786.miRNA-Seq.A C3L-04786 LSCC miRNA-Seq tissue_normal CPT0279230009 20051 C3L-04786.miRNA-Seq.A.hg38 C3L-04786 LSCC miRNA-Seq tissue_normal CPT0279230009 82151494-6c74-4cf5-a5a4-e3f63aa26ade_mirnaseq_gdc_realn.bam 239860815 BAM harmonized CPTAC3 14f752b3-6fed-4a9a-bf31-17c1db27b946 306d95260198555c91946a8cd86bfb04 { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04786.miRNA-Seq.T C3L-04786 LSCC miRNA-Seq tumor CPT0279210006 200224_UNC31-K00269_0267_AHC722BBXY_ACAGTG_S5_L006_R1_001.unaln.bam 220604822 BAM unaligned CPTAC3 4ffb68ad-9423-4c16-bba5-57835f450f4c 606cd844ddbdb598eeb1279313f14c9f { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor' } C3L-04786.miRNA-Seq.T.hg38 C3L-04786 LSCC miRNA-Seq tumor CPT0279210006 4dd0d1b1-8b7d-4fc2-babd-f0f5bef45acb_mirnaseq_gdc_realn.bam 239848891 BAM harmonized CPTAC3 11669fc5-9f8b-4509-968a-91499610e459 91369f0d04b12db11c1c4e839d0b5ba2 { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04786.RNA-Seq.chimeric.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 343ace4d-820b-42de-b789-5b46e1d99f66.rna_seq.chimeric.gdc_realn.bam 31526285 BAM chimeric harmonized CPTAC3 dd15f9ce-2cd3-4a79-99aa-e90b5fa14377 599424c3bf2b8bdb3883fb32652e572c { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04786.RNA-Seq.chimeric.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 8232583a-037c-410a-b4c2-2e4ecb0f70e9.rna_seq.chimeric.gdc_realn.bam 36516210 BAM chimeric harmonized CPTAC3 d1336a04-c248-4408-93a3-74b1d0d3406b be6142b83697b90b4ba7947d36e42c06 { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04786.RNA-Seq.genomic.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 343ace4d-820b-42de-b789-5b46e1d99f66.rna_seq.genomic.gdc_realn.bam 8506703007 BAM genomic harmonized CPTAC3 735eecd2-48c6-4fd3-a3ad-275681077919 a066dd9a21486d5df57c6beb1c001e42 { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04786.RNA-Seq.genomic.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 8232583a-037c-410a-b4c2-2e4ecb0f70e9.rna_seq.genomic.gdc_realn.bam 7077312549 BAM genomic harmonized CPTAC3 ab4c5235-d1cc-465d-81f1-4b75addd2516 5487698edd033ac28a0e1e7c71cc6b53 { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04786.RNA-Seq.R1_L006.T C3L-04786 LSCC RNA-Seq tumor CPT0279210006 200428_UNC32-K00270_0243_AHG3Y3BBXY_CAACAATG-CTTCACGG_S21_L006_R1_001.fastq.gz 3479865010 FASTQ R1_L006 unaligned CPTAC3 9ade8c4c-e0cb-4b9d-94e3-9221a03c8db9 6a3d6460676e09a8104454cd9707c1d2 { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04786.RNA-Seq.R1_L008.A C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L008_R1_001.fastq.gz 4036325353 FASTQ R1_L008 unaligned CPTAC3 cfc89afe-5f55-471c-8103-5252a5b696d1 0b6075d2b94704c081d6ea364a287895 { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04786.RNA-Seq.R2_L006.T C3L-04786 LSCC RNA-Seq tumor CPT0279210006 200428_UNC32-K00270_0243_AHG3Y3BBXY_CAACAATG-CTTCACGG_S21_L006_R2_001.fastq.gz 3690346414 FASTQ R2_L006 unaligned CPTAC3 c35d2ca2-c670-4e53-abbc-ac7af4607258 9bc3f15b4d6d7d5ee85f575b4027fbac { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor' } -C3L-04786.RNA-Seq.R2_L008.A C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L008_R2_001.fastq.gz 4641465944 FASTQ R2_L008 unaligned CPTAC3 a0b1ffc3-b500-4406-878d-aed70e0fe282 59c79332917d3eff2985aa0b2ef2a25c { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04786.RNA-Seq.transcriptome.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 343ace4d-820b-42de-b789-5b46e1d99f66.rna_seq.transcriptome.gdc_realn.bam 9355596053 BAM transcriptome harmonized CPTAC3 2ef0708e-1eba-47d9-a488-c68369075c32 b67c6cf744077ebd7ff72c118fbbdf88 { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04786.RNA-Seq.transcriptome.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 8232583a-037c-410a-b4c2-2e4ecb0f70e9.rna_seq.transcriptome.gdc_realn.bam 8396435285 BAM transcriptome harmonized CPTAC3 9d6d80ed-e298-4820-b80f-5b62f8cdee11 abe55432fa33876a4a890ae687f92607 { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04786.RNA-Seq.chimeric.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 f81bc261-f888-4bf1-959a-3f8564474278.rna_seq.chimeric.gdc_realn.bam 31515844 BAM chimeric harmonized CPTAC3 fe5e41e5-fb3d-482f-96a7-9f82c5778972 7b97bf184d0aaa999554d8b4456c6b9e { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04786.RNA-Seq.chimeric.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 1cfd03f1-a082-4b0c-be04-6e3464c25c69.rna_seq.chimeric.gdc_realn.bam 36523483 BAM chimeric harmonized CPTAC3 1c3cc54d-2a09-4bfe-999f-a64ef3b589c9 0facda299ebe975076c4a6be79b857d8 { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04786.RNA-Seq.genomic.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 f81bc261-f888-4bf1-959a-3f8564474278.rna_seq.genomic.gdc_realn.bam 8507591196 BAM genomic harmonized CPTAC3 9fd4aa01-0131-4446-9f5c-6b7abd4f4425 51d6e0795c1019e7ffb9671fbecd7014 { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04786.RNA-Seq.genomic.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 1cfd03f1-a082-4b0c-be04-6e3464c25c69.rna_seq.genomic.gdc_realn.bam 7078896591 BAM genomic harmonized CPTAC3 b9738a00-d11a-4548-93a0-1d28aa877edb c47480aae0b2576b137a3fa57a1603ae { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor' } +C3L-04786.RNA-Seq.R1_L006.T C3L-04786 LSCC RNA-Seq tumor CPT0279210006 200428_UNC32-K00270_0243_AHG3Y3BBXY_CAACAATG-CTTCACGG_S21_L006_R1_001.fastq.gz 3479865010 FASTQ R1_L006 unaligned CPTAC3 9ade8c4c-e0cb-4b9d-94e3-9221a03c8db9 6a3d6460676e09a8104454cd9707c1d2 { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-04786.RNA-Seq.R1_L008.A C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L008_R1_001.fastq.gz 4036325353 FASTQ R1_L008 unaligned CPTAC3 cfc89afe-5f55-471c-8103-5252a5b696d1 0b6075d2b94704c081d6ea364a287895 { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-04786.RNA-Seq.R2_L006.T C3L-04786 LSCC RNA-Seq tumor CPT0279210006 200428_UNC32-K00270_0243_AHG3Y3BBXY_CAACAATG-CTTCACGG_S21_L006_R2_001.fastq.gz 3690346414 FASTQ R2_L006 unaligned CPTAC3 c35d2ca2-c670-4e53-abbc-ac7af4607258 9bc3f15b4d6d7d5ee85f575b4027fbac { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-04786.RNA-Seq.R2_L008.A C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L008_R2_001.fastq.gz 4641465944 FASTQ R2_L008 unaligned CPTAC3 a0b1ffc3-b500-4406-878d-aed70e0fe282 59c79332917d3eff2985aa0b2ef2a25c { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-04786.RNA-Seq.transcriptome.A.hg38 C3L-04786 LSCC RNA-Seq tissue_normal CPT0279230009 f81bc261-f888-4bf1-959a-3f8564474278.rna_seq.transcriptome.gdc_realn.bam 10703361921 BAM transcriptome harmonized CPTAC3 93afec32-a1a7-4691-9c16-1b3078a975b7 6412b25533b73a224f3e30586aee1fa9 { 'aliquot_tag': 'ALQ_dad858fe', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04786.RNA-Seq.transcriptome.T.hg38 C3L-04786 LSCC RNA-Seq tumor CPT0279210006 1cfd03f1-a082-4b0c-be04-6e3464c25c69.rna_seq.transcriptome.gdc_realn.bam 9528929454 BAM transcriptome harmonized CPTAC3 eaaa2a9d-7aba-4e0c-8056-be39813f0610 193a2955b18694a267cd2d5c2be9377c { 'aliquot_tag': 'ALQ_30a7160f', 'gdc_sample_type': 'Primary Tumor' } C3L-04786.WGS.N C3L-04786 LSCC WGS blood_normal CPT0279350002 CPT0279350002.WholeGenome.RP-2158.bam 23865826101 BAM aligned CPTAC3 54e4018b-b8d0-4519-ae9c-1939ee18b691 2dc447415a286c4645efac6de490013d { 'aliquot_tag': 'ALQ_916a773', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04786.WGS.N.hg38 C3L-04786 LSCC WGS blood_normal CPT0279350002 d62e1c11-deb1-4bf9-acad-17ddda7c89b0_wgs_gdc_realn.bam 68224029568 BAM harmonized CPTAC3 75496f29-8401-4131-b320-d16cced4737b 4dd71dcf688e4d95cf1900152c54c063 { 'aliquot_tag': 'ALQ_916a773', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04786.WGS.T C3L-04786 LSCC WGS tumor CPT0279210009 CPT0279210009.WholeGenome.RP-2158.bam 25897885118 BAM aligned CPTAC3 060f78df-6fe1-4633-89a2-4a97d53c48c1 2d19430da77d229a99dfcea81babd553 { 'aliquot_tag': 'ALQ_a0180b9e', 'gdc_sample_type': 'Primary Tumor' } @@ -15961,12 +16925,12 @@ C3L-04791.miRNA-Seq.T C3L-04791 HNSCC miRNA-Seq tumor CPT0250310009 190228_UNC32 C3L-04791.miRNA-Seq.T.hg38 C3L-04791 HNSCC miRNA-Seq tumor CPT0250310009 a883bc4b-c020-4c94-bf7f-f640939085a4_mirnaseq_gdc_realn.bam 306761871 BAM harmonized CPTAC3 1e4db173-b057-4cbb-a21d-24682ebdb7db 91ff8ceb02a9ebd63b3434abc72ac97d { 'aliquot_tag': 'ALQ_bcf99a95', 'gdc_sample_type': 'Primary Tumor' } C3L-04791.RNA-Seq.chimeric.A.hg38 C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 205b5dc8-48fd-41e3-8447-8a33e631094f.rna_seq.chimeric.gdc_realn.bam 39842054 BAM chimeric harmonized CPTAC3 800f0174-e135-4c49-bdd5-48b255a01dfb 218d8019388997d7d297ae440b33d398 { 'aliquot_tag': 'ALQ_5686d464', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04791.RNA-Seq.chimeric.T.hg38 C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 76b0f07a-18fe-4944-86d6-69ad91105208.rna_seq.chimeric.gdc_realn.bam 195418726 BAM chimeric harmonized CPTAC3 f9eee9b6-d894-4257-8991-8396ecde39c0 33941d702074658248fc8c4509afe815 { 'aliquot_tag': 'ALQ_bcf99a95', 'gdc_sample_type': 'Primary Tumor' } -C3L-04791.RNA-Seq.genomic.A.hg38 C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 205b5dc8-48fd-41e3-8447-8a33e631094f.rna_seq.genomic.gdc_realn.bam 8358159392 BAM genomic harmonized CPTAC3 e3c0c779-5815-4867-b236-6dbc1662fd2c 123bf58eb8dede12fec895a42d5f4279 { 'aliquot_tag': 'ALQ_5686d464', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04791.RNA-Seq.genomic.T.hg38 C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 76b0f07a-18fe-4944-86d6-69ad91105208.rna_seq.genomic.gdc_realn.bam 9595231656 BAM genomic harmonized CPTAC3 3b07b305-dee1-467d-bb01-1c2094cfa45e 71db24180f5be0862a89d04443b6efb7 { 'aliquot_tag': 'ALQ_bcf99a95', 'gdc_sample_type': 'Primary Tumor' } -C3L-04791.RNA-Seq.R1_L001.T C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L001_R1_001.fastq.gz 4530786617 FASTQ R1_L001 unaligned CPTAC3 d2458585-b886-4b09-86a0-a0f29977f3af 15ed01f463784652648e5c2b609f1360 { 'aliquot_tag': 'ALQ_bcf99a95', 'gdc_sample_type': 'Primary Tumor' } -C3L-04791.RNA-Seq.R1_L004.A C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 190416_UNC32-K00270_0165_AH5JY2BBXY_TAAGTGGT-CTTAAGCC_S13_L004_R1_001.fastq.gz 4028945926 FASTQ R1_L004 unaligned CPTAC3 d5cca660-598a-4728-a855-243157a6bb55 ebda52e4d4f5fb48ef8de5a1950ffde5 { 'aliquot_tag': 'ALQ_5686d464', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04791.RNA-Seq.R2_L001.T C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L001_R2_001.fastq.gz 4655993230 FASTQ R2_L001 unaligned CPTAC3 7c1c0732-04b1-46b5-9b86-f1eda6ccc0b3 40bd800121cc61b86905d5c5c486484c { 'aliquot_tag': 'ALQ_bcf99a95', 'gdc_sample_type': 'Primary Tumor' } -C3L-04791.RNA-Seq.R2_L004.A C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 190416_UNC32-K00270_0165_AH5JY2BBXY_TAAGTGGT-CTTAAGCC_S13_L004_R2_001.fastq.gz 4617091802 FASTQ R2_L004 unaligned CPTAC3 4c220caa-87b7-4a9e-9250-50b6fd084faa 532bc9e8bc4743c7482d0e3237d1a607 { 'aliquot_tag': 'ALQ_5686d464', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04791.RNA-Seq.genomic.A.hg38 C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 205b5dc8-48fd-41e3-8447-8a33e631094f.rna_seq.genomic.gdc_realn.bam 8358159392 BAM genomic harmonized CPTAC3 75ed03b5-4581-43c7-8cc2-2f4fe0a271de 123bf58eb8dede12fec895a42d5f4279 { 'aliquot_tag': 'ALQ_5686d464', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04791.RNA-Seq.genomic.T.hg38 C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 76b0f07a-18fe-4944-86d6-69ad91105208.rna_seq.genomic.gdc_realn.bam 9595231656 BAM genomic harmonized CPTAC3 0eb49899-8a58-4759-bf6f-28b07713e73f 71db24180f5be0862a89d04443b6efb7 { 'aliquot_tag': 'ALQ_bcf99a95', 'gdc_sample_type': 'Primary Tumor' } +C3L-04791.RNA-Seq.R1_L001.T C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L001_R1_001.fastq.gz 4530786617 FASTQ R1_L001 unaligned CPTAC3 d2458585-b886-4b09-86a0-a0f29977f3af 15ed01f463784652648e5c2b609f1360 { 'aliquot_tag': 'ALQ_bcf99a95', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04791.RNA-Seq.R1_L004.A C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 190416_UNC32-K00270_0165_AH5JY2BBXY_TAAGTGGT-CTTAAGCC_S13_L004_R1_001.fastq.gz 4028945926 FASTQ R1_L004 unaligned CPTAC3 d5cca660-598a-4728-a855-243157a6bb55 ebda52e4d4f5fb48ef8de5a1950ffde5 { 'aliquot_tag': 'ALQ_5686d464', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-04791.RNA-Seq.R2_L001.T C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L001_R2_001.fastq.gz 4655993230 FASTQ R2_L001 unaligned CPTAC3 7c1c0732-04b1-46b5-9b86-f1eda6ccc0b3 40bd800121cc61b86905d5c5c486484c { 'aliquot_tag': 'ALQ_bcf99a95', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04791.RNA-Seq.R2_L004.A C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 190416_UNC32-K00270_0165_AH5JY2BBXY_TAAGTGGT-CTTAAGCC_S13_L004_R2_001.fastq.gz 4617091802 FASTQ R2_L004 unaligned CPTAC3 4c220caa-87b7-4a9e-9250-50b6fd084faa 532bc9e8bc4743c7482d0e3237d1a607 { 'aliquot_tag': 'ALQ_5686d464', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3L-04791.RNA-Seq.transcriptome.A.hg38 C3L-04791 HNSCC RNA-Seq tissue_normal CPT0250330006 205b5dc8-48fd-41e3-8447-8a33e631094f.rna_seq.transcriptome.gdc_realn.bam 10787494196 BAM transcriptome harmonized CPTAC3 2b92ed18-5cdd-47a4-8e80-74e8adc58176 137460d419d134e7529c374adf6263ab { 'aliquot_tag': 'ALQ_5686d464', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04791.RNA-Seq.transcriptome.T.hg38 C3L-04791 HNSCC RNA-Seq tumor CPT0250310009 76b0f07a-18fe-4944-86d6-69ad91105208.rna_seq.transcriptome.gdc_realn.bam 11336484739 BAM transcriptome harmonized CPTAC3 ae49c9eb-fa1a-4fa0-ae28-d4e607898bcb 140fed6e6812cb6db2a70db3ea52f1ce { 'aliquot_tag': 'ALQ_bcf99a95', 'gdc_sample_type': 'Primary Tumor' } C3L-04791.WGS.N C3L-04791 HNSCC WGS blood_normal CPT0250450002 CPT0250450002.WholeGenome.RP-1303.bam 78530104123 BAM aligned CPTAC3 103fed94-250f-4832-a9e0-647398187bd1 0a7d7ed2e26b6d2a9611a3b5f0ba474b { 'aliquot_tag': 'ALQ_c3aed565', 'gdc_sample_type': 'Blood Derived Normal' } @@ -15985,16 +16949,16 @@ C3L-04792.miRNA-Seq.A C3L-04792 LSCC miRNA-Seq tissue_normal CPT0297670009 20051 C3L-04792.miRNA-Seq.A.hg38 C3L-04792 LSCC miRNA-Seq tissue_normal CPT0297670009 330774a2-ceef-4359-ab92-a28c80cbb747_mirnaseq_gdc_realn.bam 209889955 BAM harmonized CPTAC3 05c3435c-9a98-4bf8-bcd3-9c0ddbad9202 4ec9a9f4721d08792f76b08a0446b824 { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04792.miRNA-Seq.T C3L-04792 LSCC miRNA-Seq tumor CPT0297650009 200224_UNC31-K00269_0267_AHC722BBXY_TCGAAG_S47_L007_R1_001.unaln.bam 213001197 BAM unaligned CPTAC3 c0b9bd53-207c-4bda-a6cf-4eb9be9a5884 1c2750c9c1d026ced71e21d7ecd2cb9a { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor' } C3L-04792.miRNA-Seq.T.hg38 C3L-04792 LSCC miRNA-Seq tumor CPT0297650009 0dc29a88-6a9d-4b0e-b7b4-1c97fefeb75e_mirnaseq_gdc_realn.bam 238310191 BAM harmonized CPTAC3 0a9ab958-458c-457b-8a24-ca733ea48d56 cdcf52efdb8b19294891773dc07ee25b { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor' } -C3L-04792.RNA-Seq.chimeric.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 fc873dc6-d956-43b2-a1a7-2cf8d0d10145.rna_seq.chimeric.gdc_realn.bam 26914638 BAM chimeric harmonized CPTAC3 f865e65b-8c12-4af7-85d1-10afc36b2d03 d4c11c418c1faf259393c215bb1cf94c { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04792.RNA-Seq.chimeric.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 f53e4284-861d-4b49-aae0-e1dbcb9cf5d0.rna_seq.chimeric.gdc_realn.bam 37347825 BAM chimeric harmonized CPTAC3 b288360f-8a70-4e3e-9fe5-6ce650dab6b4 452f8342b1655b8a7b23138280b05bab { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor' } -C3L-04792.RNA-Seq.genomic.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 fc873dc6-d956-43b2-a1a7-2cf8d0d10145.rna_seq.genomic.gdc_realn.bam 8445319012 BAM genomic harmonized CPTAC3 1fd54a1b-6d98-4be4-a504-bd26441275ab bd599dded6141451c1b2791f71a5344c { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04792.RNA-Seq.genomic.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 f53e4284-861d-4b49-aae0-e1dbcb9cf5d0.rna_seq.genomic.gdc_realn.bam 8786241404 BAM genomic harmonized CPTAC3 1af6ba94-6db6-4008-9557-6e765b2842b9 c9d83ac2ce2d9c3013de32cc0177a974 { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor' } -C3L-04792.RNA-Seq.R1_L002.A C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGTACCTT-AAGACGTC_S8_L002_R1_001.fastq.gz 3853211006 FASTQ R1_L002 unaligned CPTAC3 2998a5d3-97aa-432a-9be0-36e6b7a46c38 32b1d56e26606a1a4a6f454222d0ac44 { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04792.RNA-Seq.R1_L004.T C3L-04792 LSCC RNA-Seq tumor CPT0297650009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GTTCCAAT-AATTCTGC_S15_L004_R1_001.fastq.gz 4296198891 FASTQ R1_L004 unaligned CPTAC3 1234511d-d6ff-4799-93cb-ee93a0424bf6 1b30c01af76db7d23ae09ea13bc49b2f { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor' } -C3L-04792.RNA-Seq.R2_L002.A C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGTACCTT-AAGACGTC_S8_L002_R2_001.fastq.gz 4587257386 FASTQ R2_L002 unaligned CPTAC3 52ab69d3-4ae5-4074-866c-cef78151abaf 08f7a1182c30478d2a2d1e5023d5b228 { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04792.RNA-Seq.R2_L004.T C3L-04792 LSCC RNA-Seq tumor CPT0297650009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GTTCCAAT-AATTCTGC_S15_L004_R2_001.fastq.gz 4594352733 FASTQ R2_L004 unaligned CPTAC3 d542e6b6-4511-4dcf-a6c2-33b1adab5f18 212b751a4d0f7104737710dc151a7099 { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor' } -C3L-04792.RNA-Seq.transcriptome.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 fc873dc6-d956-43b2-a1a7-2cf8d0d10145.rna_seq.transcriptome.gdc_realn.bam 9609612722 BAM transcriptome harmonized CPTAC3 5497edfd-7692-4628-87cd-06194bcfe8f2 2cbee2c498ec483b95653b2e5d844f9d { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04792.RNA-Seq.transcriptome.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 f53e4284-861d-4b49-aae0-e1dbcb9cf5d0.rna_seq.transcriptome.gdc_realn.bam 10889499204 BAM transcriptome harmonized CPTAC3 481b201a-6af8-4da7-bcd7-532b8ad55423 50f54eefd925d2f4168db37bb3bb9169 { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor' } +C3L-04792.RNA-Seq.chimeric.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 0ef693c2-53a4-4781-a692-b7348bce0d61.rna_seq.chimeric.gdc_realn.bam 26904747 BAM chimeric harmonized CPTAC3 0f2be7ae-0994-4b8f-a69d-724aec6b137c ff07f8832f49640cbe81439337791e61 { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04792.RNA-Seq.chimeric.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 403b5eda-0be8-46da-a4d1-a9a94925faca.rna_seq.chimeric.gdc_realn.bam 37316326 BAM chimeric harmonized CPTAC3 85e44a96-2fc8-4c87-9eee-72b322b2e693 c4f2cdbd0556d291b4d51f4aa2668fa8 { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor' } +C3L-04792.RNA-Seq.genomic.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 0ef693c2-53a4-4781-a692-b7348bce0d61.rna_seq.genomic.gdc_realn.bam 8446510475 BAM genomic harmonized CPTAC3 53091512-3f72-4c26-83b2-084181ecce3c a584e2e97d27e1cddb08fa4384758de7 { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04792.RNA-Seq.genomic.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 403b5eda-0be8-46da-a4d1-a9a94925faca.rna_seq.genomic.gdc_realn.bam 8787844267 BAM genomic harmonized CPTAC3 300df8fb-83e0-4c57-be28-4834051e626f 25a451bddea0a14bf718ececd2b057e0 { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor' } +C3L-04792.RNA-Seq.R1_L002.A C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGTACCTT-AAGACGTC_S8_L002_R1_001.fastq.gz 3853211006 FASTQ R1_L002 unaligned CPTAC3 2998a5d3-97aa-432a-9be0-36e6b7a46c38 32b1d56e26606a1a4a6f454222d0ac44 { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-04792.RNA-Seq.R1_L004.T C3L-04792 LSCC RNA-Seq tumor CPT0297650009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GTTCCAAT-AATTCTGC_S15_L004_R1_001.fastq.gz 4296198891 FASTQ R1_L004 unaligned CPTAC3 1234511d-d6ff-4799-93cb-ee93a0424bf6 1b30c01af76db7d23ae09ea13bc49b2f { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04792.RNA-Seq.R2_L002.A C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGTACCTT-AAGACGTC_S8_L002_R2_001.fastq.gz 4587257386 FASTQ R2_L002 unaligned CPTAC3 52ab69d3-4ae5-4074-866c-cef78151abaf 08f7a1182c30478d2a2d1e5023d5b228 { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-04792.RNA-Seq.R2_L004.T C3L-04792 LSCC RNA-Seq tumor CPT0297650009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GTTCCAAT-AATTCTGC_S15_L004_R2_001.fastq.gz 4594352733 FASTQ R2_L004 unaligned CPTAC3 d542e6b6-4511-4dcf-a6c2-33b1adab5f18 212b751a4d0f7104737710dc151a7099 { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-04792.RNA-Seq.transcriptome.A.hg38 C3L-04792 LSCC RNA-Seq tissue_normal CPT0297670009 0ef693c2-53a4-4781-a692-b7348bce0d61.rna_seq.transcriptome.gdc_realn.bam 10964426969 BAM transcriptome harmonized CPTAC3 c8f66e8a-0b94-4bc0-9cb1-5de2461b4179 018375ee35e0fa9dd2ef692211c63581 { 'aliquot_tag': 'ALQ_f17cd547', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04792.RNA-Seq.transcriptome.T.hg38 C3L-04792 LSCC RNA-Seq tumor CPT0297650009 403b5eda-0be8-46da-a4d1-a9a94925faca.rna_seq.transcriptome.gdc_realn.bam 12396611725 BAM transcriptome harmonized CPTAC3 7577014f-67ba-49be-945c-e05b0e95e1e0 e79517b9f36ed08a2dca01e4c8951976 { 'aliquot_tag': 'ALQ_8bbc8627', 'gdc_sample_type': 'Primary Tumor' } C3L-04792.WGS.N C3L-04792 LSCC WGS blood_normal CPT0297780002 CPT0297780002.WholeGenome.RP-2158.bam 25245438802 BAM aligned CPTAC3 2826d306-3653-4d2f-80e3-3544fd6f8fb0 06204361571e2f0495dde1605a1c2ec1 { 'aliquot_tag': 'ALQ_2fa248bb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04792.WGS.N.hg38 C3L-04792 LSCC WGS blood_normal CPT0297780002 d58e9015-53d6-4a74-b3dc-55c27acd8016_wgs_gdc_realn.bam 73153320417 BAM harmonized CPTAC3 2e6c3df5-9ace-47df-ad27-5c5c1ccf902c 7a774c32cd5676792798ae2fb614c84f { 'aliquot_tag': 'ALQ_2fa248bb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04792.WGS.T C3L-04792 LSCC WGS tumor CPT0297650006 CPT0297650006.WholeGenome.RP-2158.bam 27485373003 BAM aligned CPTAC3 ed9627aa-97e9-4b49-850a-100f7a771bc8 0b295e25a1012e97f32876d9e154e452 { 'aliquot_tag': 'ALQ_1b039bb6', 'gdc_sample_type': 'Primary Tumor' } @@ -16009,11 +16973,11 @@ C3L-04795.MethArray.Green.T C3L-04795 GBM Methylation Array tumor CPT0257640006 C3L-04795.MethArray.Red.T C3L-04795 GBM Methylation Array tumor CPT0257640006 204930630113_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 2fe76084-e231-40b3-b882-13ccc5fd05ec 5960a7afdd81148e4e29fd1aa8ac6120 { 'aliquot_tag': 'ALQ_71cca749', 'gdc_sample_type': 'Primary Tumor' } C3L-04795.miRNA-Seq.T C3L-04795 GBM miRNA-Seq tumor CPT0257640009 200403_UNC31-K00269_0274_AHCF7GBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 298863378 BAM unaligned CPTAC3 64cf5a0d-50c0-49b4-8ff4-a220d43ad1b2 1a4f200a83c0082d1053f6bb314dbbd7 { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor' } C3L-04795.miRNA-Seq.T.hg38 C3L-04795 GBM miRNA-Seq tumor CPT0257640009 f44042cb-e293-4f34-884d-4ed796d4d746_mirnaseq_gdc_realn.bam 335243543 BAM harmonized CPTAC3 38edfdd0-d6e2-4227-9e62-42dd598e4e88 c5f46d7c55f022e6817e2f27082cdbc0 { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor' } -C3L-04795.RNA-Seq.chimeric.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 96d5aca4-a5f2-4442-937d-0264f2f4509f.rna_seq.chimeric.gdc_realn.bam 33291474 BAM chimeric harmonized CPTAC3 47192d57-90a0-43e0-84b5-d0c2c036e6db 2d67fef7b48ad20daf58a929177dd062 { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor' } -C3L-04795.RNA-Seq.genomic.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 96d5aca4-a5f2-4442-937d-0264f2f4509f.rna_seq.genomic.gdc_realn.bam 7770364713 BAM genomic harmonized CPTAC3 4aa51aa8-7d57-461f-8d15-26a00efd76fe c1df2fbd977ef394d828b738e8a5f180 { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor' } -C3L-04795.RNA-Seq.R1_L005.T C3L-04795 GBM RNA-Seq tumor CPT0257640009 200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 3633010663 FASTQ R1_L005 unaligned CPTAC3 0ff10436-30c0-4571-a5f1-db72929506b8 688c644298eb23aa2d7c31f5bb943c2e { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor' } -C3L-04795.RNA-Seq.R2_L005.T C3L-04795 GBM RNA-Seq tumor CPT0257640009 200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4117685899 FASTQ R2_L005 unaligned CPTAC3 d3c4c707-2ecb-44db-9c2b-04a6f624d67f f560ddfe6756b0bb5baf8ac6ebc3a8c1 { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor' } -C3L-04795.RNA-Seq.transcriptome.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 96d5aca4-a5f2-4442-937d-0264f2f4509f.rna_seq.transcriptome.gdc_realn.bam 7516873577 BAM transcriptome harmonized CPTAC3 d3779991-26a7-4ded-b72c-2126bca7c29d 7153c54161cce7f05ed0b67551cb3bb1 { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor' } +C3L-04795.RNA-Seq.chimeric.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 5c8c19b4-ebdc-4a15-8232-fc54a7e925ea.rna_seq.chimeric.gdc_realn.bam 33272009 BAM chimeric harmonized CPTAC3 1e711ed8-072d-42df-9b4b-351bcf23bd9b 21bc6799cbdffda23200e9a3ff8ae32b { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor' } +C3L-04795.RNA-Seq.genomic.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 5c8c19b4-ebdc-4a15-8232-fc54a7e925ea.rna_seq.genomic.gdc_realn.bam 7771192212 BAM genomic harmonized CPTAC3 92aca12b-142c-4893-9f79-7fff37b19f76 2d289e63aabdb46c901d63d9f26c6657 { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor' } +C3L-04795.RNA-Seq.R1_L005.T C3L-04795 GBM RNA-Seq tumor CPT0257640009 200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 3633010663 FASTQ R1_L005 unaligned CPTAC3 0ff10436-30c0-4571-a5f1-db72929506b8 688c644298eb23aa2d7c31f5bb943c2e { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04795.RNA-Seq.R2_L005.T C3L-04795 GBM RNA-Seq tumor CPT0257640009 200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4117685899 FASTQ R2_L005 unaligned CPTAC3 d3c4c707-2ecb-44db-9c2b-04a6f624d67f f560ddfe6756b0bb5baf8ac6ebc3a8c1 { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-04795.RNA-Seq.transcriptome.T.hg38 C3L-04795 GBM RNA-Seq tumor CPT0257640009 5c8c19b4-ebdc-4a15-8232-fc54a7e925ea.rna_seq.transcriptome.gdc_realn.bam 8723813806 BAM transcriptome harmonized CPTAC3 97f66948-9536-49ef-8e9a-73a42c83c704 487f27da039f8976dcd0d9214df6e443 { 'aliquot_tag': 'ALQ_e173bad8', 'gdc_sample_type': 'Primary Tumor' } C3L-04795.WGS.N C3L-04795 GBM WGS blood_normal CPT0257730002 CPT0257730002.WholeGenome.RP-2158.bam 21078681011 BAM aligned CPTAC3 d5594591-b0be-46d5-a50b-687a1116392c 995ab0767e58ee7fe1efedad6e9d3530 { 'aliquot_tag': 'ALQ_fdd6ce5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04795.WGS.N.hg38 C3L-04795 GBM WGS blood_normal CPT0257730002 66331f85-ba28-4eb8-9df1-60a3cd38d91a_wgs_gdc_realn.bam 59840869093 BAM harmonized CPTAC3 f2cabdf1-f980-49c4-b2bf-e877bcd84a37 3bcb06c175b4d94e65cc21b849bcda1c { 'aliquot_tag': 'ALQ_fdd6ce5', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04795.WGS.T C3L-04795 GBM WGS tumor CPT0257640006 CPT0257640006.WholeGenome.RP-2158.bam 29876299653 BAM aligned CPTAC3 a47b409b-7dcf-4b2a-b0b0-d101f0883464 3f5e62ccaa486489891ddae53f0bb3e6 { 'aliquot_tag': 'ALQ_71cca749', 'gdc_sample_type': 'Primary Tumor' } @@ -16030,16 +16994,16 @@ C3L-04804.miRNA-Seq.A C3L-04804 LSCC miRNA-Seq tissue_normal CPT0271710006 20051 C3L-04804.miRNA-Seq.A.hg38 C3L-04804 LSCC miRNA-Seq tissue_normal CPT0271710006 ae14e750-f719-4d94-a2da-27865eb14020_mirnaseq_gdc_realn.bam 321477449 BAM harmonized CPTAC3 2b1791cd-4163-454a-ae39-ee14a93dbaa6 cacf8433520e8393eec860beb4044b07 { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04804.miRNA-Seq.T C3L-04804 LSCC miRNA-Seq tumor CPT0271660009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACTCA_S32_L008_R1_001.unaln.bam 178949664 BAM unaligned CPTAC3 d16746d6-b11f-4b67-ad79-7504dc4a04a8 265a47252633253bb0afb52def96fac7 { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor' } C3L-04804.miRNA-Seq.T.hg38 C3L-04804 LSCC miRNA-Seq tumor CPT0271660009 ebe8d36a-a587-4369-96bc-ef167787b04e_mirnaseq_gdc_realn.bam 202434701 BAM harmonized CPTAC3 e58d4af7-5a58-45f3-8745-145db6fa4e79 b49d31bdf2a248f1b7de733640e5cc85 { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor' } -C3L-04804.RNA-Seq.chimeric.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 da1a7caa-2f73-4228-b4af-3b9511b8219b.rna_seq.chimeric.gdc_realn.bam 29489808 BAM chimeric harmonized CPTAC3 3287e4dc-9458-4eb0-a254-8e25135a3f99 f631fca15bed1d5a1294f8bc6dda5d96 { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04804.RNA-Seq.chimeric.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 cd17dbd6-2415-4382-89a6-997b7a080d25.rna_seq.chimeric.gdc_realn.bam 120988218 BAM chimeric harmonized CPTAC3 5e4408fe-d73d-4472-9c04-9aea192bc9f3 681523540325100437df6929157336d0 { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor' } -C3L-04804.RNA-Seq.genomic.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 da1a7caa-2f73-4228-b4af-3b9511b8219b.rna_seq.genomic.gdc_realn.bam 8821202277 BAM genomic harmonized CPTAC3 791482ba-3a76-43d7-8f08-7efde97d3709 91002f40941b2ecfd8d303ad87694466 { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04804.RNA-Seq.genomic.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 cd17dbd6-2415-4382-89a6-997b7a080d25.rna_seq.genomic.gdc_realn.bam 7409151391 BAM genomic harmonized CPTAC3 f67cbaf1-e80f-4b87-9ae0-18673c36a509 54190adc74b18da4fff195007419ab0f { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor' } -C3L-04804.RNA-Seq.R1_L007.A C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 200505_UNC32-K00270_0246_BHH5F5BBXY_GGAGCGTC-GTCCGTGC_S28_L007_R1_001.fastq.gz 3954974557 FASTQ R1_L007 unaligned CPTAC3 1dc0c8e5-af32-494f-87ce-addfc5172591 f6163e0ac884cf90fa8cb2d721a2e490 { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04804.RNA-Seq.R1_L008.T C3L-04804 LSCC RNA-Seq tumor CPT0271660009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGAATAT-TCTCATTC_S31_L008_R1_001.fastq.gz 3630606497 FASTQ R1_L008 unaligned CPTAC3 8f1df38c-a08a-4163-9c6f-040406b7c08b ad77b41a52b17d6e781c582ba98db759 { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor' } -C3L-04804.RNA-Seq.R2_L007.A C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 200505_UNC32-K00270_0246_BHH5F5BBXY_GGAGCGTC-GTCCGTGC_S28_L007_R2_001.fastq.gz 4879925528 FASTQ R2_L007 unaligned CPTAC3 73175b4a-676f-40dc-96b1-b7acbc3193fa f456b4a5e0e3fe5634e239f97c5dc05f { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04804.RNA-Seq.R2_L008.T C3L-04804 LSCC RNA-Seq tumor CPT0271660009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGAATAT-TCTCATTC_S31_L008_R2_001.fastq.gz 3982146068 FASTQ R2_L008 unaligned CPTAC3 5a1d038c-27db-4d50-8c01-ac4f8468e8bf 0f499ecb349d8733b833d0c4de807dc4 { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor' } -C3L-04804.RNA-Seq.transcriptome.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 da1a7caa-2f73-4228-b4af-3b9511b8219b.rna_seq.transcriptome.gdc_realn.bam 9465166515 BAM transcriptome harmonized CPTAC3 7be8afd3-487b-4ee0-9356-6c2ee3d2dcc7 f562722d52f5bfd9f441da5730b5a584 { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04804.RNA-Seq.transcriptome.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 cd17dbd6-2415-4382-89a6-997b7a080d25.rna_seq.transcriptome.gdc_realn.bam 7785373021 BAM transcriptome harmonized CPTAC3 7bf62433-3e76-4366-9ec3-283385637da5 d5b9ed6e9ea9eee77ff6a878521097f4 { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor' } +C3L-04804.RNA-Seq.chimeric.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 a0d13859-a685-4ff1-ba74-75a0934e6e38.rna_seq.chimeric.gdc_realn.bam 29481489 BAM chimeric harmonized CPTAC3 344e3285-ab3f-4783-a248-f2af53e0b168 eaa1df7a2d41905f4486d2e085b73565 { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04804.RNA-Seq.chimeric.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 5049e723-8da7-4b1a-bc29-03e117344c8e.rna_seq.chimeric.gdc_realn.bam 120967413 BAM chimeric harmonized CPTAC3 1c9e1399-a0f7-40a6-907f-a43a54534425 53bedfce20576dbcc83710ef775bd08d { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor' } +C3L-04804.RNA-Seq.genomic.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 a0d13859-a685-4ff1-ba74-75a0934e6e38.rna_seq.genomic.gdc_realn.bam 8822852167 BAM genomic harmonized CPTAC3 7f5d7002-9a2a-4a4f-a484-9d0bcd0051dd 13a2612fc2b915a88224cabfbfaed97b { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04804.RNA-Seq.genomic.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 5049e723-8da7-4b1a-bc29-03e117344c8e.rna_seq.genomic.gdc_realn.bam 7410818684 BAM genomic harmonized CPTAC3 85d27037-af2d-4daf-b95e-b4cbb9ff1b0a 1333ec817b801ddf8421d69af3355ad4 { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor' } +C3L-04804.RNA-Seq.R1_L007.A C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 200505_UNC32-K00270_0246_BHH5F5BBXY_GGAGCGTC-GTCCGTGC_S28_L007_R1_001.fastq.gz 3954974557 FASTQ R1_L007 unaligned CPTAC3 1dc0c8e5-af32-494f-87ce-addfc5172591 f6163e0ac884cf90fa8cb2d721a2e490 { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-04804.RNA-Seq.R1_L008.T C3L-04804 LSCC RNA-Seq tumor CPT0271660009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGAATAT-TCTCATTC_S31_L008_R1_001.fastq.gz 3630606497 FASTQ R1_L008 unaligned CPTAC3 8f1df38c-a08a-4163-9c6f-040406b7c08b ad77b41a52b17d6e781c582ba98db759 { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04804.RNA-Seq.R2_L007.A C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 200505_UNC32-K00270_0246_BHH5F5BBXY_GGAGCGTC-GTCCGTGC_S28_L007_R2_001.fastq.gz 4879925528 FASTQ R2_L007 unaligned CPTAC3 73175b4a-676f-40dc-96b1-b7acbc3193fa f456b4a5e0e3fe5634e239f97c5dc05f { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-04804.RNA-Seq.R2_L008.T C3L-04804 LSCC RNA-Seq tumor CPT0271660009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGAATAT-TCTCATTC_S31_L008_R2_001.fastq.gz 3982146068 FASTQ R2_L008 unaligned CPTAC3 5a1d038c-27db-4d50-8c01-ac4f8468e8bf 0f499ecb349d8733b833d0c4de807dc4 { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04804.RNA-Seq.transcriptome.A.hg38 C3L-04804 LSCC RNA-Seq tissue_normal CPT0271710006 a0d13859-a685-4ff1-ba74-75a0934e6e38.rna_seq.transcriptome.gdc_realn.bam 10752437586 BAM transcriptome harmonized CPTAC3 0e5db407-eae7-4947-9404-67d08ca6a5b1 3b1e5aaf381333bda90d4b05f835522f { 'aliquot_tag': 'ALQ_5385c9db', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04804.RNA-Seq.transcriptome.T.hg38 C3L-04804 LSCC RNA-Seq tumor CPT0271660009 5049e723-8da7-4b1a-bc29-03e117344c8e.rna_seq.transcriptome.gdc_realn.bam 8845654064 BAM transcriptome harmonized CPTAC3 8d8faa69-9202-4bc8-aefa-6a1d63487a66 5716f9d940b5c2f0eef807632966548c { 'aliquot_tag': 'ALQ_ba46dbff', 'gdc_sample_type': 'Primary Tumor' } C3L-04804.WGS.N C3L-04804 LSCC WGS blood_normal CPT0271780002 CPT0271780002.WholeGenome.RP-2158.bam 24517687844 BAM aligned CPTAC3 499aeed9-14f5-42b9-88df-11674f74cd4c 82751da4b019be1da3a1bc87641ed38f { 'aliquot_tag': 'ALQ_59f86fb3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04804.WGS.N.hg38 C3L-04804 LSCC WGS blood_normal CPT0271780002 94c1986f-de49-4808-92d5-59f1854e9cab_wgs_gdc_realn.bam 73420136435 BAM harmonized CPTAC3 39910c35-c8c1-48ac-bace-b2628f125c54 19794406f8bebe1b5b27128c60dd0471 { 'aliquot_tag': 'ALQ_59f86fb3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04804.WGS.T C3L-04804 LSCC WGS tumor CPT0271660006 CPT0271660006.WholeGenome.RP-2158.bam 26118439189 BAM aligned CPTAC3 46c9466c-2837-4522-8e4c-1840013ca0c3 d1c2c48fc300fd88c6d74801962b2bb0 { 'aliquot_tag': 'ALQ_2af9c66e', 'gdc_sample_type': 'Primary Tumor' } @@ -16058,16 +17022,16 @@ C3L-04808.miRNA-Seq.A C3L-04808 LSCC miRNA-Seq tissue_normal CPT0298310009 20051 C3L-04808.miRNA-Seq.A.hg38 C3L-04808 LSCC miRNA-Seq tissue_normal CPT0298310009 cd332395-ee37-463e-a513-2ba85b0e53d7_mirnaseq_gdc_realn.bam 247111078 BAM harmonized CPTAC3 62a18584-2c36-4648-90ea-a432266d924d 4cb0be3ccfd93c921bd16a2fa4a51ccf { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04808.miRNA-Seq.T C3L-04808 LSCC miRNA-Seq tumor CPT0298280009 200224_UNC31-K00269_0267_AHC722BBXY_CGATGT_S2_L006_R1_001.unaln.bam 212607497 BAM unaligned CPTAC3 2d12e9d7-a277-463b-b314-42bafaf125f7 dc2b110d28a9dcef757cc791be0d4961 { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor' } C3L-04808.miRNA-Seq.T.hg38 C3L-04808 LSCC miRNA-Seq tumor CPT0298280009 6a73dd0b-52e1-4a79-90cd-ceaa7308fa70_mirnaseq_gdc_realn.bam 237118876 BAM harmonized CPTAC3 c3c82b64-0873-418e-a936-d8a3554bc586 f55db0b3df8a62099dce4efe8cae2188 { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor' } -C3L-04808.RNA-Seq.chimeric.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 5221f44d-145f-4bb3-baf0-331a648ebf7c.rna_seq.chimeric.gdc_realn.bam 39917904 BAM chimeric harmonized CPTAC3 d4c9e6a2-8c8b-4693-85a3-8a68ff207c64 544851dbe66243d62cd63f21525f91aa { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04808.RNA-Seq.chimeric.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 0dcafbdb-89d9-4565-91fc-02bca95783a1.rna_seq.chimeric.gdc_realn.bam 57793584 BAM chimeric harmonized CPTAC3 e07f05d7-9fc2-41ab-a58a-169aea0516bb 67dcf43ad353ba122a0cbfdfd6a8f080 { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor' } -C3L-04808.RNA-Seq.genomic.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 5221f44d-145f-4bb3-baf0-331a648ebf7c.rna_seq.genomic.gdc_realn.bam 9444717801 BAM genomic harmonized CPTAC3 4dc9f974-edcb-4e89-8375-c41d0e7996da c2ad2e03d7ef6c396f08dbb9d80ff614 { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04808.RNA-Seq.genomic.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 0dcafbdb-89d9-4565-91fc-02bca95783a1.rna_seq.genomic.gdc_realn.bam 7614657095 BAM genomic harmonized CPTAC3 b829894c-9373-4e5c-8d1b-74b7a0a640ca 981ff59a76a78987bf447bca56e5963b { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor' } -C3L-04808.RNA-Seq.R1_L002.A C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGAGGCC-GTTAATTG_S6_L002_R1_001.fastq.gz 4288462316 FASTQ R1_L002 unaligned CPTAC3 712589eb-f67d-4055-a20f-0bd599b09d5c 878f9fecbbac5f1e108a4dc59351a3c3 { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04808.RNA-Seq.R1_L005.T C3L-04808 LSCC RNA-Seq tumor CPT0298280009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCTCTA-GCTCCGAC_S18_L005_R1_001.fastq.gz 3879878723 FASTQ R1_L005 unaligned CPTAC3 b8010249-4903-4091-9712-b2f9e90e8cc7 283ce1e0a8414047be8e44d4fb72a098 { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor' } -C3L-04808.RNA-Seq.R2_L002.A C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGAGGCC-GTTAATTG_S6_L002_R2_001.fastq.gz 5191911855 FASTQ R2_L002 unaligned CPTAC3 148e8f13-4990-4215-8baa-c2cb4ab4974c 58b4f622a1e911a643c648c0350ba6d4 { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04808.RNA-Seq.R2_L005.T C3L-04808 LSCC RNA-Seq tumor CPT0298280009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCTCTA-GCTCCGAC_S18_L005_R2_001.fastq.gz 4086445798 FASTQ R2_L005 unaligned CPTAC3 dc42b8fe-573c-4d61-bc51-0c05161b88c0 1230615871e493141c1ec944a7e4c3ea { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor' } -C3L-04808.RNA-Seq.transcriptome.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 5221f44d-145f-4bb3-baf0-331a648ebf7c.rna_seq.transcriptome.gdc_realn.bam 10062700412 BAM transcriptome harmonized CPTAC3 852e1c27-0785-4433-843b-de5f0d8a00c4 4260251e4c4b70458c49b1d0856fb39a { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04808.RNA-Seq.transcriptome.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 0dcafbdb-89d9-4565-91fc-02bca95783a1.rna_seq.transcriptome.gdc_realn.bam 9633072739 BAM transcriptome harmonized CPTAC3 ae41d85a-34d2-4466-abee-0ba0fe802b38 b6f7cd54ac894d9c39e28e6ed9e184fd { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor' } +C3L-04808.RNA-Seq.chimeric.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 e750852b-9038-4c73-a60d-bf53cfbd2e52.rna_seq.chimeric.gdc_realn.bam 39894481 BAM chimeric harmonized CPTAC3 00881cab-b3d7-4c88-a2de-c1da328d0a7c 5f47580e8af7272c59f3e678d6c6f073 { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04808.RNA-Seq.chimeric.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 8b963c3a-2257-4c58-a44f-f6335f71b0b6.rna_seq.chimeric.gdc_realn.bam 57775833 BAM chimeric harmonized CPTAC3 1c58cb37-3297-45d1-bb1c-7567ff66157f 1fd16860e8d541b165df86a295353c8f { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor' } +C3L-04808.RNA-Seq.genomic.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 e750852b-9038-4c73-a60d-bf53cfbd2e52.rna_seq.genomic.gdc_realn.bam 9446606319 BAM genomic harmonized CPTAC3 d1092820-550a-49fc-a300-cc50aef42e2c a7b5a64e5f7644e74fbbbb495c35f5dd { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04808.RNA-Seq.genomic.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 8b963c3a-2257-4c58-a44f-f6335f71b0b6.rna_seq.genomic.gdc_realn.bam 7615918809 BAM genomic harmonized CPTAC3 8bb03f1b-326c-40d0-8622-b6fba28eced9 453d63b084243058b0c260f565110473 { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor' } +C3L-04808.RNA-Seq.R1_L002.A C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGAGGCC-GTTAATTG_S6_L002_R1_001.fastq.gz 4288462316 FASTQ R1_L002 unaligned CPTAC3 712589eb-f67d-4055-a20f-0bd599b09d5c 878f9fecbbac5f1e108a4dc59351a3c3 { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-04808.RNA-Seq.R1_L005.T C3L-04808 LSCC RNA-Seq tumor CPT0298280009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCTCTA-GCTCCGAC_S18_L005_R1_001.fastq.gz 3879878723 FASTQ R1_L005 unaligned CPTAC3 b8010249-4903-4091-9712-b2f9e90e8cc7 283ce1e0a8414047be8e44d4fb72a098 { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04808.RNA-Seq.R2_L002.A C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGAGGCC-GTTAATTG_S6_L002_R2_001.fastq.gz 5191911855 FASTQ R2_L002 unaligned CPTAC3 148e8f13-4990-4215-8baa-c2cb4ab4974c 58b4f622a1e911a643c648c0350ba6d4 { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-04808.RNA-Seq.R2_L005.T C3L-04808 LSCC RNA-Seq tumor CPT0298280009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCTCTA-GCTCCGAC_S18_L005_R2_001.fastq.gz 4086445798 FASTQ R2_L005 unaligned CPTAC3 dc42b8fe-573c-4d61-bc51-0c05161b88c0 1230615871e493141c1ec944a7e4c3ea { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-04808.RNA-Seq.transcriptome.A.hg38 C3L-04808 LSCC RNA-Seq tissue_normal CPT0298310009 e750852b-9038-4c73-a60d-bf53cfbd2e52.rna_seq.transcriptome.gdc_realn.bam 11408164322 BAM transcriptome harmonized CPTAC3 3afa1900-c5bd-4e5f-8a8f-871e1547b5f5 e2070c4574730cdf8a101f6d2fea3518 { 'aliquot_tag': 'ALQ_d8b9c1bd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04808.RNA-Seq.transcriptome.T.hg38 C3L-04808 LSCC RNA-Seq tumor CPT0298280009 8b963c3a-2257-4c58-a44f-f6335f71b0b6.rna_seq.transcriptome.gdc_realn.bam 10865133117 BAM transcriptome harmonized CPTAC3 4792290d-6c64-4371-b6ba-6cbeea0b15cb d16d90680cd14b2a5c550541cc4c72c0 { 'aliquot_tag': 'ALQ_1ef57069', 'gdc_sample_type': 'Primary Tumor' } C3L-04808.WGS.N C3L-04808 LSCC WGS blood_normal CPT0298360002 CPT0298360002.WholeGenome.RP-2158.bam 19153558988 BAM aligned CPTAC3 bc7092fd-2f78-4f61-b9cc-0571ac6e2812 5e58f468cab4bd0e5ad298f7aecdfed5 { 'aliquot_tag': 'ALQ_fd4bc425', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04808.WGS.N.hg38 C3L-04808 LSCC WGS blood_normal CPT0298360002 c15ee2a6-727a-430d-b7c0-61dc832d0dc9_wgs_gdc_realn.bam 57262199273 BAM harmonized CPTAC3 a78e3b98-6eae-4067-858e-c2a3835b7b21 954d6476a753f3ea0802b02ff45d9c74 { 'aliquot_tag': 'ALQ_fd4bc425', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04808.WGS.T C3L-04808 LSCC WGS tumor CPT0298280006 CPT0298280006.WholeGenome.RP-2158.bam 22740077927 BAM aligned CPTAC3 258726c5-7312-4eff-a525-63dfeff141c5 667e24695ffcf1eb133936afb9c82ebe { 'aliquot_tag': 'ALQ_8e4a6df8', 'gdc_sample_type': 'Primary Tumor' } @@ -16082,8 +17046,8 @@ C3L-04815.MethArray.Green.T C3L-04815 GBM Methylation Array tumor CPT0327090006 C3L-04815.MethArray.Red.T C3L-04815 GBM Methylation Array tumor CPT0327090006 204372030087_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 18b0a525-b6c9-4f5d-a5b5-ce09c32ecc29 30ce5c3b87c54ab1248418e8d7161194 { 'aliquot_tag': 'ALQ_42bb9dbf', 'gdc_sample_type': 'Primary Tumor' } C3L-04815.miRNA-Seq.T C3L-04815 GBM miRNA-Seq tumor CPT0327090008 201209_UNC32-K00270_0265_AHJ55WBBXY_ATTCCT_S4_L006_R1_001.unaln.bam 206128168 BAM unaligned CPTAC3 bd2663b8-b86d-4fcd-836f-c143a0d0a404 13b87e81f9b7692500adf2603158fbc2 { 'aliquot_tag': 'ALQ_a503b0b8', 'gdc_sample_type': 'Primary Tumor' } C3L-04815.miRNA-Seq.T.hg38 C3L-04815 GBM miRNA-Seq tumor CPT0327090008 1109bbec-d535-4615-a731-41df9b9885b8_mirnaseq_gdc_realn.bam 234959553 BAM harmonized CPTAC3 82abe514-cbfb-412c-80b7-8f400617119c 5e86376a8107d8fca983c8beb4bd9fb5 { 'aliquot_tag': 'ALQ_a503b0b8', 'gdc_sample_type': 'Primary Tumor' } -C3L-04815.RNA-Seq.R1_L007.T C3L-04815 GBM RNA-Seq tumor CPT0327090008 200505_UNC31-K00269_0277_AHGFKNBBXY_AGTACTCC-AACCTGTT_S25_L007_R1_001.fastq.gz 3282529622 FASTQ R1_L007 unaligned CPTAC3 98af91ad-d44e-408c-916f-7556d400b63f ef76157ddea90b9f2632df8476742ffd { 'aliquot_tag': 'ALQ_a503b0b8', 'gdc_sample_type': 'Primary Tumor' } -C3L-04815.RNA-Seq.R2_L007.T C3L-04815 GBM RNA-Seq tumor CPT0327090008 200505_UNC31-K00269_0277_AHGFKNBBXY_AGTACTCC-AACCTGTT_S25_L007_R2_001.fastq.gz 3726412542 FASTQ R2_L007 unaligned CPTAC3 949518ac-c6fe-4d94-9aed-e9aa29d99314 a541a424431a9654aeded1dce67f4154 { 'aliquot_tag': 'ALQ_a503b0b8', 'gdc_sample_type': 'Primary Tumor' } +C3L-04815.RNA-Seq.R1_L007.T C3L-04815 GBM RNA-Seq tumor CPT0327090008 200505_UNC31-K00269_0277_AHGFKNBBXY_AGTACTCC-AACCTGTT_S25_L007_R1_001.fastq.gz 3282529622 FASTQ R1_L007 unaligned CPTAC3 98af91ad-d44e-408c-916f-7556d400b63f ef76157ddea90b9f2632df8476742ffd { 'aliquot_tag': 'ALQ_a503b0b8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-04815.RNA-Seq.R2_L007.T C3L-04815 GBM RNA-Seq tumor CPT0327090008 200505_UNC31-K00269_0277_AHGFKNBBXY_AGTACTCC-AACCTGTT_S25_L007_R2_001.fastq.gz 3726412542 FASTQ R2_L007 unaligned CPTAC3 949518ac-c6fe-4d94-9aed-e9aa29d99314 a541a424431a9654aeded1dce67f4154 { 'aliquot_tag': 'ALQ_a503b0b8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-04815.WGS.N C3L-04815 GBM WGS blood_normal CPT0327200002 CPT0327200002.WholeGenome.RP-2158.bam 24108701234 BAM aligned CPTAC3 b5145261-bab8-46be-b48d-8a80b69f34dc 65122f959c4b4e92b0d5e8c347e9637d { 'aliquot_tag': 'ALQ_50e9adc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04815.WGS.T C3L-04815 GBM WGS tumor CPT0327090006 CPT0327090006.WholeGenome.RP-2158.bam 25418013508 BAM aligned CPTAC3 611742e4-6936-484e-ac86-9f1ef316f749 67dad132a56c8671f462cdecee9cbde7 { 'aliquot_tag': 'ALQ_42bb9dbf', 'gdc_sample_type': 'Primary Tumor' } C3L-04815.WXS.N C3L-04815 GBM WXS blood_normal CPT0327200002 CPT0327200002.WholeExome.RP-1303.bam 27836915389 BAM aligned CPTAC3 67882a3f-48ee-4b68-80bd-55cb703e0c39 7a468c4f2a40fb2c1d22c90880796396 { 'aliquot_tag': 'ALQ_50e9adc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -16093,8 +17057,8 @@ C3L-04817.MethArray.Green.T C3L-04817 GBM Methylation Array tumor CPT0327250006 C3L-04817.MethArray.Red.T C3L-04817 GBM Methylation Array tumor CPT0327250006 204367470132_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 9d14ebcc-3f85-49bf-8c9b-76ab87d03125 0c72455d675bbc09bb07ef404c3f9c85 { 'aliquot_tag': 'ALQ_ca83d1b5', 'gdc_sample_type': 'Primary Tumor' } C3L-04817.miRNA-Seq.T C3L-04817 GBM miRNA-Seq tumor CPT0327250009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAGGCG_S33_L008_R1_001.unaln.bam 163277644 BAM unaligned CPTAC3 77519768-82d7-4334-a1a8-5c2611a4b841 63f9a0ec6a534f7678e3315bf6721fb9 { 'aliquot_tag': 'ALQ_5a3ccc24', 'gdc_sample_type': 'Primary Tumor' } C3L-04817.miRNA-Seq.T.hg38 C3L-04817 GBM miRNA-Seq tumor CPT0327250009 61ae4291-409f-4029-8316-597f87d114d6_mirnaseq_gdc_realn.bam 183101008 BAM harmonized CPTAC3 772cdde7-6d0e-4925-a789-f8c75bdf21bf 89a80cf59536cd9924b2697ddecacf08 { 'aliquot_tag': 'ALQ_5a3ccc24', 'gdc_sample_type': 'Primary Tumor' } -C3L-04817.RNA-Seq.R1_L003.T C3L-04817 GBM RNA-Seq tumor CPT0327250009 200518_UNC32-K00270_0247_AHH573BBXY_AACTGTAG-ACGCCGCA_S25_L003_R1_001.fastq.gz 6357599724 FASTQ R1_L003 unaligned CPTAC3 e3577dd8-984f-486c-9d9e-ce8d4e8889be 3f205f423ee42f5cb7ec0c0756d56af0 { 'aliquot_tag': 'ALQ_5a3ccc24', 'gdc_sample_type': 'Primary Tumor' } -C3L-04817.RNA-Seq.R2_L003.T C3L-04817 GBM RNA-Seq tumor CPT0327250009 200518_UNC32-K00270_0247_AHH573BBXY_AACTGTAG-ACGCCGCA_S25_L003_R2_001.fastq.gz 7503411381 FASTQ R2_L003 unaligned CPTAC3 0a870ed5-d914-42cf-879c-b2d81c020910 d56b6909bd4e21cbeb0f546ab16317db { 'aliquot_tag': 'ALQ_5a3ccc24', 'gdc_sample_type': 'Primary Tumor' } +C3L-04817.RNA-Seq.R1_L003.T C3L-04817 GBM RNA-Seq tumor CPT0327250009 200518_UNC32-K00270_0247_AHH573BBXY_AACTGTAG-ACGCCGCA_S25_L003_R1_001.fastq.gz 6357599724 FASTQ R1_L003 unaligned CPTAC3 e3577dd8-984f-486c-9d9e-ce8d4e8889be 3f205f423ee42f5cb7ec0c0756d56af0 { 'aliquot_tag': 'ALQ_5a3ccc24', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-04817.RNA-Seq.R2_L003.T C3L-04817 GBM RNA-Seq tumor CPT0327250009 200518_UNC32-K00270_0247_AHH573BBXY_AACTGTAG-ACGCCGCA_S25_L003_R2_001.fastq.gz 7503411381 FASTQ R2_L003 unaligned CPTAC3 0a870ed5-d914-42cf-879c-b2d81c020910 d56b6909bd4e21cbeb0f546ab16317db { 'aliquot_tag': 'ALQ_5a3ccc24', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3L-04817.WGS.N C3L-04817 GBM WGS blood_normal CPT0329360002 CPT0329360002.WholeGenome.RP-2158.bam 20589037834 BAM aligned CPTAC3 fce9f8b5-18c4-4bb2-b9a1-0db673d19d23 47e2c53920b883ff6bd05b8fe539628e { 'aliquot_tag': 'ALQ_112dc784', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04817.WGS.T C3L-04817 GBM WGS tumor CPT0327250006 CPT0327250006.WholeGenome.RP-2158.bam 27764067629 BAM aligned CPTAC3 8877e9f0-19a1-429d-aa4d-e8a7807d6dfb a7d1929ca54cf9d077d20418775cb11d { 'aliquot_tag': 'ALQ_ca83d1b5', 'gdc_sample_type': 'Primary Tumor' } C3L-04817.WXS.N C3L-04817 GBM WXS blood_normal CPT0329360002 CPT0329360002.WholeExome.RP-1303.bam 19363881942 BAM aligned CPTAC3 463fcf46-a349-4597-ba68-97403dfb1331 1a6e49e7f423297f8c96a7620db27906 { 'aliquot_tag': 'ALQ_112dc784', 'gdc_sample_type': 'Blood Derived Normal' } @@ -16103,8 +17067,8 @@ C3L-04819.MethArray.Green.T C3L-04819 GBM Methylation Array tumor CPT0300330007 C3L-04819.MethArray.Red.T C3L-04819 GBM Methylation Array tumor CPT0300330007 204372030023_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 cdc77029-fd84-4da7-9f76-56a37bfe9512 13c26ab41e8464032a3c5aa07215faed { 'aliquot_tag': 'ALQ_7e1afed5', 'gdc_sample_type': 'Primary Tumor' } C3L-04819.miRNA-Seq.T C3L-04819 GBM miRNA-Seq tumor CPT0300330010 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCGAAG_S47_L008_R1_001.unaln.bam 247622064 BAM unaligned CPTAC3 1ed49b4d-2fb4-4621-b669-2124ae89ded9 e4c306c4d3aa363b0cce6113b9a32bee { 'aliquot_tag': 'ALQ_f9655a37', 'gdc_sample_type': 'Primary Tumor' } C3L-04819.miRNA-Seq.T.hg38 C3L-04819 GBM miRNA-Seq tumor CPT0300330010 239ada33-a818-423a-898e-2b2e1d0253a2_mirnaseq_gdc_realn.bam 282104185 BAM harmonized CPTAC3 7bed5e55-5d38-44d8-af0b-5f6b97668b63 4949736b2a37b618809e3511ca82712a { 'aliquot_tag': 'ALQ_f9655a37', 'gdc_sample_type': 'Primary Tumor' } -C3L-04819.RNA-Seq.R1_L005.T C3L-04819 GBM RNA-Seq tumor CPT0300330010 200218_UNC31-K00269_0266_AHGKHKBBXY_TAAGGTCA-TGTCGTAG_S56_L005_R1_001.fastq.gz 4374501298 FASTQ R1_L005 unaligned CPTAC3 083859d3-282e-4035-998d-83a4f425f9cf ccee4b255c9193e6fcbb77c7f4f0b478 { 'aliquot_tag': 'ALQ_f9655a37', 'gdc_sample_type': 'Primary Tumor' } -C3L-04819.RNA-Seq.R2_L005.T C3L-04819 GBM RNA-Seq tumor CPT0300330010 200218_UNC31-K00269_0266_AHGKHKBBXY_TAAGGTCA-TGTCGTAG_S56_L005_R2_001.fastq.gz 4754062682 FASTQ R2_L005 unaligned CPTAC3 8e96b951-e574-4ab7-af77-0291721c10f2 429887ff2f395a865a4dd62a6b1c2e9d { 'aliquot_tag': 'ALQ_f9655a37', 'gdc_sample_type': 'Primary Tumor' } +C3L-04819.RNA-Seq.R1_L005.T C3L-04819 GBM RNA-Seq tumor CPT0300330010 200218_UNC31-K00269_0266_AHGKHKBBXY_TAAGGTCA-TGTCGTAG_S56_L005_R1_001.fastq.gz 4374501298 FASTQ R1_L005 unaligned CPTAC3 083859d3-282e-4035-998d-83a4f425f9cf ccee4b255c9193e6fcbb77c7f4f0b478 { 'aliquot_tag': 'ALQ_f9655a37', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04819.RNA-Seq.R2_L005.T C3L-04819 GBM RNA-Seq tumor CPT0300330010 200218_UNC31-K00269_0266_AHGKHKBBXY_TAAGGTCA-TGTCGTAG_S56_L005_R2_001.fastq.gz 4754062682 FASTQ R2_L005 unaligned CPTAC3 8e96b951-e574-4ab7-af77-0291721c10f2 429887ff2f395a865a4dd62a6b1c2e9d { 'aliquot_tag': 'ALQ_f9655a37', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-04819.WGS.N C3L-04819 GBM WGS blood_normal CPT0300680002 CPT0300680002.WholeGenome.RP-2158.bam 22538740543 BAM aligned CPTAC3 7b5a2ccc-a643-4bbc-8361-cd0588cbabf2 fe3f191a513941aeb2eb93ab75be665e { 'aliquot_tag': 'ALQ_296daaf8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04819.WGS.T C3L-04819 GBM WGS tumor CPT0300330007 CPT0300330007.WholeGenome.RP-2158.bam 28307882084 BAM aligned CPTAC3 082407db-56e0-4085-8cbf-0dedd4e9f08b 623e62e06866e776fcb58d2e9ad661eb { 'aliquot_tag': 'ALQ_7e1afed5', 'gdc_sample_type': 'Primary Tumor' } C3L-04819.WXS.N C3L-04819 GBM WXS blood_normal CPT0300680002 CPT0300680002.WholeExome.RP-1303.bam 30965760624 BAM aligned CPTAC3 b77d19d6-2b7e-4526-9ab5-f27dc29e73b0 9ff53535bfccf3e84d7204183ac5bfa2 { 'aliquot_tag': 'ALQ_296daaf8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -16113,8 +17077,8 @@ C3L-04838.MethArray.Green.T C3L-04838 GBM Methylation Array tumor CPT0329380007 C3L-04838.MethArray.Red.T C3L-04838 GBM Methylation Array tumor CPT0329380007 204367470131_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 9fe20c53-dada-4882-bcad-4eec1eca32be fec28822bf7789eb65d60eba8471de02 { 'aliquot_tag': 'ALQ_de778d6a', 'gdc_sample_type': 'Primary Tumor' } C3L-04838.miRNA-Seq.T C3L-04838 GBM miRNA-Seq tumor CPT0329380010 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAAAAG_S28_L008_R1_001.unaln.bam 144603851 BAM unaligned CPTAC3 970d261c-e984-48fe-99e8-616c64e50550 aa65755fa9dc8c2a8daa98d48e527e67 { 'aliquot_tag': 'ALQ_59082988', 'gdc_sample_type': 'Primary Tumor' } C3L-04838.miRNA-Seq.T.hg38 C3L-04838 GBM miRNA-Seq tumor CPT0329380010 f975781b-04eb-4f81-a267-f9efa5d030c4_mirnaseq_gdc_realn.bam 169295647 BAM harmonized CPTAC3 7e14dc7c-aebc-4648-8c10-41c44173723f 59b3dc9b487800c09de3bbdf20e37920 { 'aliquot_tag': 'ALQ_59082988', 'gdc_sample_type': 'Primary Tumor' } -C3L-04838.RNA-Seq.R1_L007.T C3L-04838 GBM RNA-Seq tumor CPT0329380010 200505_UNC31-K00269_0277_AHGFKNBBXY_GACGTCTT-GGTTCACC_S27_L007_R1_001.fastq.gz 4656797411 FASTQ R1_L007 unaligned CPTAC3 73658b9b-94b2-4b47-ac91-89ae815b22ae 21a5bd7d90386ac151cca80d002d7b69 { 'aliquot_tag': 'ALQ_59082988', 'gdc_sample_type': 'Primary Tumor' } -C3L-04838.RNA-Seq.R2_L007.T C3L-04838 GBM RNA-Seq tumor CPT0329380010 200505_UNC31-K00269_0277_AHGFKNBBXY_GACGTCTT-GGTTCACC_S27_L007_R2_001.fastq.gz 5166364306 FASTQ R2_L007 unaligned CPTAC3 52fafe76-c371-49f2-a86c-366d79d9d5c5 433a11448a74b520978e4630bbe733bc { 'aliquot_tag': 'ALQ_59082988', 'gdc_sample_type': 'Primary Tumor' } +C3L-04838.RNA-Seq.R1_L007.T C3L-04838 GBM RNA-Seq tumor CPT0329380010 200505_UNC31-K00269_0277_AHGFKNBBXY_GACGTCTT-GGTTCACC_S27_L007_R1_001.fastq.gz 4656797411 FASTQ R1_L007 unaligned CPTAC3 73658b9b-94b2-4b47-ac91-89ae815b22ae 21a5bd7d90386ac151cca80d002d7b69 { 'aliquot_tag': 'ALQ_59082988', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-04838.RNA-Seq.R2_L007.T C3L-04838 GBM RNA-Seq tumor CPT0329380010 200505_UNC31-K00269_0277_AHGFKNBBXY_GACGTCTT-GGTTCACC_S27_L007_R2_001.fastq.gz 5166364306 FASTQ R2_L007 unaligned CPTAC3 52fafe76-c371-49f2-a86c-366d79d9d5c5 433a11448a74b520978e4630bbe733bc { 'aliquot_tag': 'ALQ_59082988', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3L-04838.WGS.N C3L-04838 GBM WGS blood_normal CPT0329530002 CPT0329530002.WholeGenome.RP-2158.bam 23458458005 BAM aligned CPTAC3 085d7478-803f-4bfb-81dc-0af1b087c20d 0d87d5a072f95c78b66896ae823feb84 { 'aliquot_tag': 'ALQ_f94abe9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04838.WGS.T C3L-04838 GBM WGS tumor CPT0329380007 CPT0329380007.WholeGenome.RP-2158.bam 21352974464 BAM aligned CPTAC3 628713b5-a9ad-4a0f-bb4b-cd5cd7cc0a27 022832bf799d0a7413bc2fb397ad37ba { 'aliquot_tag': 'ALQ_de778d6a', 'gdc_sample_type': 'Primary Tumor' } C3L-04838.WXS.N C3L-04838 GBM WXS blood_normal CPT0329530002 CPT0329530002.WholeExome.RP-1303.bam 43918090236 BAM aligned CPTAC3 4be236b8-4702-49df-926e-2511e5fed750 4b4ac036bd983d516e3ec09846182654 { 'aliquot_tag': 'ALQ_f94abe9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -16125,8 +17089,8 @@ C3L-04843.MethArray.Green.T C3L-04843 GBM Methylation Array tumor CPT0329590006 C3L-04843.MethArray.Red.T C3L-04843 GBM Methylation Array tumor CPT0329590006 204372030106_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 a4350bd7-a768-4072-8477-81b693aa39b9 7e770a2441dc2138b3b6bd23917980e3 { 'aliquot_tag': 'ALQ_42497751', 'gdc_sample_type': 'Primary Tumor' } C3L-04843.miRNA-Seq.T C3L-04843 GBM miRNA-Seq tumor CPT0329590009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CAACTA_S29_L008_R1_001.unaln.bam 250439366 BAM unaligned CPTAC3 fa10c05a-c87c-43cc-b088-4864057b869d b0130eb501b3ac759323cceedbfc6f22 { 'aliquot_tag': 'ALQ_d2f66ac0', 'gdc_sample_type': 'Primary Tumor' } C3L-04843.miRNA-Seq.T.hg38 C3L-04843 GBM miRNA-Seq tumor CPT0329590009 515d1e32-f651-4724-bb81-61811c6521bd_mirnaseq_gdc_realn.bam 285186134 BAM harmonized CPTAC3 1cb7f97e-d7fe-40d4-8404-95cf05c3014d 8090a6854834a71861f556799f1d5e50 { 'aliquot_tag': 'ALQ_d2f66ac0', 'gdc_sample_type': 'Primary Tumor' } -C3L-04843.RNA-Seq.R1_L008.T C3L-04843 GBM RNA-Seq tumor CPT0329590009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGAGAC-CATTGTTG_S32_L008_R1_001.fastq.gz 4080113834 FASTQ R1_L008 unaligned CPTAC3 b2976a2a-0485-4bcd-8c55-3b7d1a6b0414 bcf89a21b7f8b83a8be606deb5334234 { 'aliquot_tag': 'ALQ_d2f66ac0', 'gdc_sample_type': 'Primary Tumor' } -C3L-04843.RNA-Seq.R2_L008.T C3L-04843 GBM RNA-Seq tumor CPT0329590009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGAGAC-CATTGTTG_S32_L008_R2_001.fastq.gz 4589850953 FASTQ R2_L008 unaligned CPTAC3 97ea2622-ed5e-42d5-b3cf-135be69cd9c3 7c9778bca1b0914e1d36eb85016b3267 { 'aliquot_tag': 'ALQ_d2f66ac0', 'gdc_sample_type': 'Primary Tumor' } +C3L-04843.RNA-Seq.R1_L008.T C3L-04843 GBM RNA-Seq tumor CPT0329590009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGAGAC-CATTGTTG_S32_L008_R1_001.fastq.gz 4080113834 FASTQ R1_L008 unaligned CPTAC3 b2976a2a-0485-4bcd-8c55-3b7d1a6b0414 bcf89a21b7f8b83a8be606deb5334234 { 'aliquot_tag': 'ALQ_d2f66ac0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04843.RNA-Seq.R2_L008.T C3L-04843 GBM RNA-Seq tumor CPT0329590009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGCGAGAC-CATTGTTG_S32_L008_R2_001.fastq.gz 4589850953 FASTQ R2_L008 unaligned CPTAC3 97ea2622-ed5e-42d5-b3cf-135be69cd9c3 7c9778bca1b0914e1d36eb85016b3267 { 'aliquot_tag': 'ALQ_d2f66ac0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-04843.WGS.N C3L-04843 GBM WGS blood_normal CPT0329700002 CPT0329700002.WholeGenome.RP-2158.bam 29138716308 BAM aligned CPTAC3 a0e1a1e7-1321-4e9e-95de-91f1c18cafde cddb630671b78138724952e4d031fcea { 'aliquot_tag': 'ALQ_5fc7032', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04843.WGS.T C3L-04843 GBM WGS tumor CPT0329590006 CPT0329590006.WholeGenome.RP-2158.bam 25261456820 BAM aligned CPTAC3 120e25ac-d786-43de-9ec5-6d9a7ce3fdd2 02cec57b6062c0b9bc08646905d2d073 { 'aliquot_tag': 'ALQ_42497751', 'gdc_sample_type': 'Primary Tumor' } C3L-04843.WXS.N C3L-04843 GBM WXS blood_normal CPT0329700002 CPT0329700002.WholeExome.RP-1303.bam 24382101090 BAM aligned CPTAC3 381ce4d7-a0c7-445e-af63-aca683d60ccd 7191cc4bdbd9408170300450408c3d69 { 'aliquot_tag': 'ALQ_5fc7032', 'gdc_sample_type': 'Blood Derived Normal' } @@ -16136,9 +17100,9 @@ C3L-04844.MethArray.Red.T C3L-04844 HNSCC Methylation Array tumor CPT0248330006 C3L-04844.miRNA-Seq.T C3L-04844 HNSCC miRNA-Seq tumor CPT0248330009 190228_UNC32-K00270_0151_AHYLY3BBXX_TATAAT_S44_L007_R1_001.unaln.bam 253673217 BAM unaligned CPTAC3 bd348995-2ed0-41cf-a231-f551265d1311 918065cefd2c914cf50a650be7010dd9 { 'aliquot_tag': 'ALQ_397c870c', 'gdc_sample_type': 'Primary Tumor' } C3L-04844.miRNA-Seq.T.hg38 C3L-04844 HNSCC miRNA-Seq tumor CPT0248330009 d1629195-a43e-4a0f-bb20-a5f7371b0c0c_mirnaseq_gdc_realn.bam 283633542 BAM harmonized CPTAC3 58b4b314-5a6e-4aee-b455-e5171c4b83c5 aac996f7498d059f853dbc328f24bbab { 'aliquot_tag': 'ALQ_397c870c', 'gdc_sample_type': 'Primary Tumor' } C3L-04844.RNA-Seq.chimeric.T.hg38 C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 6e0988c8-ccf5-4211-892d-8b9ff75d2d6d.rna_seq.chimeric.gdc_realn.bam 35296017 BAM chimeric harmonized CPTAC3 cd1155b0-83ac-4b88-b8e5-212f251849bb be3245ecfd5271525fcc496c632b59af { 'aliquot_tag': 'ALQ_397c870c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04844.RNA-Seq.genomic.T.hg38 C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 6e0988c8-ccf5-4211-892d-8b9ff75d2d6d.rna_seq.genomic.gdc_realn.bam 10139308398 BAM genomic harmonized CPTAC3 b65d9f3f-52c5-439b-8776-35848890c3cc 483abf9efbd153126f75ac988e184167 { 'aliquot_tag': 'ALQ_397c870c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04844.RNA-Seq.R1_L005.T C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 190416_UNC32-K00270_0165_AH5JY2BBXY_GGAGCGTC-GTCCGTGC_S20_L005_R1_001.fastq.gz 4787124941 FASTQ R1_L005 unaligned CPTAC3 6765873c-3b79-4afe-a8e1-f783348fbb2e 81082e1cbfa10dade3d57f2fa25782ef { 'aliquot_tag': 'ALQ_397c870c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04844.RNA-Seq.R2_L005.T C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 190416_UNC32-K00270_0165_AH5JY2BBXY_GGAGCGTC-GTCCGTGC_S20_L005_R2_001.fastq.gz 5510419498 FASTQ R2_L005 unaligned CPTAC3 3a99719b-9806-4c7f-8fbb-7ca27b3c509b 1b22f2a2e0a507f77367d618ec727d29 { 'aliquot_tag': 'ALQ_397c870c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04844.RNA-Seq.genomic.T.hg38 C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 6e0988c8-ccf5-4211-892d-8b9ff75d2d6d.rna_seq.genomic.gdc_realn.bam 10139308398 BAM genomic harmonized CPTAC3 67c2bb48-7baf-4910-9a42-08365964558f 483abf9efbd153126f75ac988e184167 { 'aliquot_tag': 'ALQ_397c870c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04844.RNA-Seq.R1_L005.T C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 190416_UNC32-K00270_0165_AH5JY2BBXY_GGAGCGTC-GTCCGTGC_S20_L005_R1_001.fastq.gz 4787124941 FASTQ R1_L005 unaligned CPTAC3 6765873c-3b79-4afe-a8e1-f783348fbb2e 81082e1cbfa10dade3d57f2fa25782ef { 'aliquot_tag': 'ALQ_397c870c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04844.RNA-Seq.R2_L005.T C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 190416_UNC32-K00270_0165_AH5JY2BBXY_GGAGCGTC-GTCCGTGC_S20_L005_R2_001.fastq.gz 5510419498 FASTQ R2_L005 unaligned CPTAC3 3a99719b-9806-4c7f-8fbb-7ca27b3c509b 1b22f2a2e0a507f77367d618ec727d29 { 'aliquot_tag': 'ALQ_397c870c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-04844.RNA-Seq.transcriptome.T.hg38 C3L-04844 HNSCC RNA-Seq tumor CPT0248330009 6e0988c8-ccf5-4211-892d-8b9ff75d2d6d.rna_seq.transcriptome.gdc_realn.bam 13310109132 BAM transcriptome harmonized CPTAC3 533651bd-51d7-4319-8477-898167bc01de b7a3009e91d05aeafc49a8fd422a91ba { 'aliquot_tag': 'ALQ_397c870c', 'gdc_sample_type': 'Primary Tumor' } C3L-04844.WGS.N C3L-04844 HNSCC WGS blood_normal CPT0248360002 CPT0248360002.WholeGenome.RP-1303.bam 66940859292 BAM aligned CPTAC3 ad0ffde8-f5f0-4538-a713-02908329b98a e0b8f69a747a6be52fab7973441299c1 { 'aliquot_tag': 'ALQ_664ed1f4', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04844.WGS.N.hg38 C3L-04844 HNSCC WGS blood_normal CPT0248360002 161b063d-d8ab-4135-aad8-d40fc65b7a2c_wgs_gdc_realn.bam 98908625191 BAM harmonized CPTAC3 910211a0-2824-4eff-bfe5-94088ea3cec4 02ab2561e2b621a6a8c37f3b006df0ca { 'aliquot_tag': 'ALQ_664ed1f4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -16153,9 +17117,9 @@ C3L-04848.MethArray.Red.T C3L-04848 PDA Methylation Array tumor CPT0248410007 20 C3L-04848.miRNA-Seq.T C3L-04848 PDA miRNA-Seq tumor CPT0248410010 190813_UNC32-K00270_0196_AH5MCWBBXY_TTAGGC_S32_L004_R1_001.unaln.bam 274553753 BAM unaligned CPTAC3 43902004-3c77-4930-b075-0b6ba0c2819e 8b5c687c3b29755ab7240bad7b433407 { 'aliquot_tag': 'ALQ_3e7e6d31', 'gdc_sample_type': 'Primary Tumor' } C3L-04848.miRNA-Seq.T.hg38 C3L-04848 PDA miRNA-Seq tumor CPT0248410010 9c67645b-7aa7-4ac9-a27e-de76bd6efc1f_mirnaseq_gdc_realn.bam 309366108 BAM harmonized CPTAC3 aa24d00b-2681-4765-9aee-2efb715b162e 551f8323915b5a4bdbfe611704e2f08e { 'aliquot_tag': 'ALQ_3e7e6d31', 'gdc_sample_type': 'Primary Tumor' } C3L-04848.RNA-Seq.chimeric.T.hg38 C3L-04848 PDA RNA-Seq tumor CPT0248410010 ee9ae2af-487d-4e5e-8f86-fd8da4c7ad2b.rna_seq.chimeric.gdc_realn.bam 225981709 BAM chimeric harmonized CPTAC3 1e0ab33a-3860-4ddb-a974-38b14fc7dfda 8f880451d87f1aa234766eefae0945fd { 'aliquot_tag': 'ALQ_3e7e6d31', 'gdc_sample_type': 'Primary Tumor' } -C3L-04848.RNA-Seq.genomic.T.hg38 C3L-04848 PDA RNA-Seq tumor CPT0248410010 ee9ae2af-487d-4e5e-8f86-fd8da4c7ad2b.rna_seq.genomic.gdc_realn.bam 14027444354 BAM genomic harmonized CPTAC3 6ddfde11-df86-4915-8f7e-52208b103ebd 8c21efb66b12c9ba1e691c8226d19c45 { 'aliquot_tag': 'ALQ_3e7e6d31', 'gdc_sample_type': 'Primary Tumor' } -C3L-04848.RNA-Seq.R1_L008.T C3L-04848 PDA RNA-Seq tumor CPT0248410010 190717_UNC31-K00269_0233_BH7HG5BBXY_AACAGGTT-ATACCAAG_S33_L008_R1_001.fastq.gz 5465136410 FASTQ R1_L008 unaligned CPTAC3 c4c2a1e1-dc6a-4438-84dc-c69b56ab3cbe ff68d0309a37e5e898a83a17e9d99b79 { 'aliquot_tag': 'ALQ_3e7e6d31', 'gdc_sample_type': 'Primary Tumor' } -C3L-04848.RNA-Seq.R2_L008.T C3L-04848 PDA RNA-Seq tumor CPT0248410010 190717_UNC31-K00269_0233_BH7HG5BBXY_AACAGGTT-ATACCAAG_S33_L008_R2_001.fastq.gz 5588271010 FASTQ R2_L008 unaligned CPTAC3 ee7e05a9-2134-40f8-9aa5-53fa23fc2ef3 da35269271c061501965ff50165fed8b { 'aliquot_tag': 'ALQ_3e7e6d31', 'gdc_sample_type': 'Primary Tumor' } +C3L-04848.RNA-Seq.genomic.T.hg38 C3L-04848 PDA RNA-Seq tumor CPT0248410010 ee9ae2af-487d-4e5e-8f86-fd8da4c7ad2b.rna_seq.genomic.gdc_realn.bam 14027444354 BAM genomic harmonized CPTAC3 cef11416-0142-42a0-8744-1c6ebdd43af9 8c21efb66b12c9ba1e691c8226d19c45 { 'aliquot_tag': 'ALQ_3e7e6d31', 'gdc_sample_type': 'Primary Tumor' } +C3L-04848.RNA-Seq.R1_L008.T C3L-04848 PDA RNA-Seq tumor CPT0248410010 190717_UNC31-K00269_0233_BH7HG5BBXY_AACAGGTT-ATACCAAG_S33_L008_R1_001.fastq.gz 5465136410 FASTQ R1_L008 unaligned CPTAC3 c4c2a1e1-dc6a-4438-84dc-c69b56ab3cbe ff68d0309a37e5e898a83a17e9d99b79 { 'aliquot_tag': 'ALQ_3e7e6d31', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04848.RNA-Seq.R2_L008.T C3L-04848 PDA RNA-Seq tumor CPT0248410010 190717_UNC31-K00269_0233_BH7HG5BBXY_AACAGGTT-ATACCAAG_S33_L008_R2_001.fastq.gz 5588271010 FASTQ R2_L008 unaligned CPTAC3 ee7e05a9-2134-40f8-9aa5-53fa23fc2ef3 da35269271c061501965ff50165fed8b { 'aliquot_tag': 'ALQ_3e7e6d31', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3L-04848.RNA-Seq.transcriptome.T.hg38 C3L-04848 PDA RNA-Seq tumor CPT0248410010 ee9ae2af-487d-4e5e-8f86-fd8da4c7ad2b.rna_seq.transcriptome.gdc_realn.bam 11536542743 BAM transcriptome harmonized CPTAC3 94b456db-eb70-4b0c-a75e-85abd7c0370a a4a5e4e328fdbea949522eacbd577187 { 'aliquot_tag': 'ALQ_3e7e6d31', 'gdc_sample_type': 'Primary Tumor' } C3L-04848.Targeted.T C3L-04848 PDA Targeted Sequencing tumor CPT0248410007 CPT0248410007.CustomSelection.RP-1303.PDO-18786.bam 5039641210 BAM aligned CPTAC3 75cb9ef1-744a-4562-84a8-d17d6676f4a2 39d23a4ed29bd744da10c972ab9afb59 { 'aliquot_tag': 'ALQ_b901c9d3', 'gdc_sample_type': 'Primary Tumor' } C3L-04848.Targeted.T.hg38 C3L-04848 PDA Targeted Sequencing tumor CPT0248410007 4d3b3837-9e79-472a-addf-9f37a7e0deeb_targetedsequencing_gdc_realn.bam 7295885657 BAM harmonized CPTAC3 2f2045a7-cab6-4535-ae12-a2ab7c96d572 c6034c624e3e07adb366e6d2c9fe9a67 { 'aliquot_tag': 'ALQ_b901c9d3', 'gdc_sample_type': 'Primary Tumor' } @@ -16172,12 +17136,15 @@ C3L-04849.MethArray.Red.T C3L-04849 HNSCC Methylation Array tumor CPT0248520006 C3L-04849.miRNA-Seq.T C3L-04849 HNSCC miRNA-Seq tumor CPT0248520009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCATTC_S45_L007_R1_001.unaln.bam 166507573 BAM unaligned CPTAC3 6fb44401-917f-4026-871f-085b5b86fd79 2fd14da0ea2b4223a9b89d44e7617d76 { 'aliquot_tag': 'ALQ_d2454da1', 'gdc_sample_type': 'Primary Tumor' } C3L-04849.miRNA-Seq.T.hg38 C3L-04849 HNSCC miRNA-Seq tumor CPT0248520009 ef929482-6acb-45aa-8561-4988dbea1fe8_mirnaseq_gdc_realn.bam 187534696 BAM harmonized CPTAC3 de1cd91b-c98f-4fd9-8d0e-ef185501a4f3 beda049bcff84b8cffdbfd628d2f320e { 'aliquot_tag': 'ALQ_d2454da1', 'gdc_sample_type': 'Primary Tumor' } C3L-04849.RNA-Seq.chimeric.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 36f94b97-5481-432b-8658-bd1fe2b0863e.rna_seq.chimeric.gdc_realn.bam 30188762 BAM chimeric harmonized CPTAC3 e0b6407e-e383-482e-800c-a6494c9ffa47 305e9d2fae677f0ea3e00f745602d2f1 { 'aliquot_tag': 'ALQ_d2454da1', 'gdc_sample_type': 'Primary Tumor' } -C3L-04849.RNA-Seq.genomic.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 36f94b97-5481-432b-8658-bd1fe2b0863e.rna_seq.genomic.gdc_realn.bam 9212222282 BAM genomic harmonized CPTAC3 1ab7b945-f62e-42b2-997b-10a51691fdd8 6b26d9e8fa2ed9cb4a6eb220e6d30387 { 'aliquot_tag': 'ALQ_d2454da1', 'gdc_sample_type': 'Primary Tumor' } -C3L-04849.RNA-Seq.R1_L006.T C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATGGCATG-AAGGTACC_S23_L006_R1_001.fastq.gz 4296837003 FASTQ R1_L006 unaligned CPTAC3 1477efe0-e758-4814-9202-918d9456d63c ea2302e08ccae3d4154df27f18e1ce13 { 'aliquot_tag': 'ALQ_d2454da1', 'gdc_sample_type': 'Primary Tumor' } -C3L-04849.RNA-Seq.R1_.T C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 20210729_P3_F5_WB7988-Plate3_S65_R1_001.fastq.gz 1648171727 FASTQ R1_ unaligned CPTAC3 34ac1a8a-6177-4064-b7aa-75875511e6bb 325f4981a05da56b7d80814e7e8d60eb { 'aliquot_tag': 'ALQ_f40f0a23', 'gdc_sample_type': 'Primary Tumor' } -C3L-04849.RNA-Seq.R2_L006.T C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATGGCATG-AAGGTACC_S23_L006_R2_001.fastq.gz 4922773030 FASTQ R2_L006 unaligned CPTAC3 0739385d-e93f-4da7-89d1-8d0ed8d74071 2220a4ec37c0d699004b590ea47e7fe0 { 'aliquot_tag': 'ALQ_d2454da1', 'gdc_sample_type': 'Primary Tumor' } -C3L-04849.RNA-Seq.R2_.T C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 20210729_P3_F5_WB7988-Plate3_S65_R2_001.fastq.gz 1805612075 FASTQ R2_ unaligned CPTAC3 a0f945ea-cd4d-4071-8b46-cbcd65dd52d7 4152cb84729ddcde56311ddb0147c13e { 'aliquot_tag': 'ALQ_f40f0a23', 'gdc_sample_type': 'Primary Tumor' } +C3L-04849.RNA-Seq.chimeric.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 eba78093-281e-4242-8a9c-6375154bbb8a.rna_seq.chimeric.gdc_realn.bam 13527124 BAM chimeric harmonized CPTAC3 213b9b52-a13c-4bfa-923e-e7c6343574bf 6532d8a17aa8ad339097139c0c5262b5 { 'aliquot_tag': 'ALQ_f40f0a23', 'gdc_sample_type': 'Primary Tumor' } +C3L-04849.RNA-Seq.genomic.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 36f94b97-5481-432b-8658-bd1fe2b0863e.rna_seq.genomic.gdc_realn.bam 9212222282 BAM genomic harmonized CPTAC3 28f81636-4e46-4c5e-9088-db04e34b64ce 6b26d9e8fa2ed9cb4a6eb220e6d30387 { 'aliquot_tag': 'ALQ_d2454da1', 'gdc_sample_type': 'Primary Tumor' } +C3L-04849.RNA-Seq.genomic.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 eba78093-281e-4242-8a9c-6375154bbb8a.rna_seq.genomic.gdc_realn.bam 4065327610 BAM genomic harmonized CPTAC3 a9cab4c8-fecc-4e6d-a0e9-5516cd4eec4a a5bff3c6f594de3c63fa54e2f2a9d914 { 'aliquot_tag': 'ALQ_f40f0a23', 'gdc_sample_type': 'Primary Tumor' } +C3L-04849.RNA-Seq.R1_L006.T C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATGGCATG-AAGGTACC_S23_L006_R1_001.fastq.gz 4296837003 FASTQ R1_L006 unaligned CPTAC3 1477efe0-e758-4814-9202-918d9456d63c ea2302e08ccae3d4154df27f18e1ce13 { 'aliquot_tag': 'ALQ_d2454da1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-04849.RNA-Seq.R2_L006.T C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATGGCATG-AAGGTACC_S23_L006_R2_001.fastq.gz 4922773030 FASTQ R2_L006 unaligned CPTAC3 0739385d-e93f-4da7-89d1-8d0ed8d74071 2220a4ec37c0d699004b590ea47e7fe0 { 'aliquot_tag': 'ALQ_d2454da1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-04849.RNA-Seq.T C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 20210729_P3_F5_WB7988-Plate3_S65_R1_001.fastq.gz 1648171727 FASTQ unaligned CPTAC3 34ac1a8a-6177-4064-b7aa-75875511e6bb 325f4981a05da56b7d80814e7e8d60eb +C3L-04849.RNA-Seq.T C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 20210729_P3_F5_WB7988-Plate3_S65_R2_001.fastq.gz 1805612075 FASTQ unaligned CPTAC3 a0f945ea-cd4d-4071-8b46-cbcd65dd52d7 4152cb84729ddcde56311ddb0147c13e C3L-04849.RNA-Seq.transcriptome.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0248520009 36f94b97-5481-432b-8658-bd1fe2b0863e.rna_seq.transcriptome.gdc_realn.bam 12688041222 BAM transcriptome harmonized CPTAC3 2ae99f51-06e5-4483-ae45-03b076547278 b93d5ce02080231a3727d1f69f804cb0 { 'aliquot_tag': 'ALQ_d2454da1', 'gdc_sample_type': 'Primary Tumor' } +C3L-04849.RNA-Seq.transcriptome.T.hg38 C3L-04849 HNSCC RNA-Seq tumor CPT0318160011 eba78093-281e-4242-8a9c-6375154bbb8a.rna_seq.transcriptome.gdc_realn.bam 2176541295 BAM transcriptome harmonized CPTAC3 3ca4d944-ac88-4c38-ac94-658e86358ecf a1a700669890db5f84ac443093abe7b5 { 'aliquot_tag': 'ALQ_f40f0a23', 'gdc_sample_type': 'Primary Tumor' } C3L-04849.WGS.N C3L-04849 HNSCC WGS blood_normal CPT0248540002 CPT0248540002.WholeGenome.RP-1303.bam 74762683950 BAM aligned CPTAC3 e349ea49-7cfc-4176-9c3e-5cd208ff7154 684312c493971a6ce6a7dce8cc7aadab { 'aliquot_tag': 'ALQ_cad76189', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04849.WGS.N.hg38 C3L-04849 HNSCC WGS blood_normal CPT0248540002 0d55ab95-104a-4c9f-bb3e-db6ec1ccc1dc_wgs_gdc_realn.bam 108508363635 BAM harmonized CPTAC3 914419b2-d11f-4f3e-9fc1-6bc5baeecefe 43e1d7e66a50a984ade2a62c5a150075 { 'aliquot_tag': 'ALQ_cad76189', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04849.WGS.T C3L-04849 HNSCC WGS tumor CPT0248520006 CPT0248520006.WholeGenome.RP-1303.bam 58831635028 BAM aligned CPTAC3 5b66bd63-cdc4-45fb-b632-b45bcc883f69 d8b5568754fd83cbeb4ed53b2355e8f7 { 'aliquot_tag': 'ALQ_42fa5030', 'gdc_sample_type': 'Primary Tumor' } @@ -16191,9 +17158,9 @@ C3L-04853.MethArray.Red.T C3L-04853 PDA Methylation Array tumor CPT0248590007 20 C3L-04853.miRNA-Seq.T C3L-04853 PDA miRNA-Seq tumor CPT0248590014 190813_UNC32-K00270_0196_AH5MCWBBXY_TAATCG_S28_L003_R1_001.unaln.bam 268137016 BAM unaligned CPTAC3 c03edc80-eb0e-417f-9c74-af4c2eb4e647 68c08f1c4ad3e45ea404d0b06d1ede74 { 'aliquot_tag': 'ALQ_c23f314c', 'gdc_sample_type': 'Primary Tumor' } C3L-04853.miRNA-Seq.T.hg38 C3L-04853 PDA miRNA-Seq tumor CPT0248590014 46eab201-0f73-4464-9739-5620e92e5e05_mirnaseq_gdc_realn.bam 301461258 BAM harmonized CPTAC3 6276085d-68b3-4cb0-b4d4-e79967a5934d a7d5d0c2eb41d16e016f71a03a46a2e6 { 'aliquot_tag': 'ALQ_c23f314c', 'gdc_sample_type': 'Primary Tumor' } C3L-04853.RNA-Seq.chimeric.T.hg38 C3L-04853 PDA RNA-Seq tumor CPT0248590014 89ee954a-adc3-49cb-87d5-c35d8d3782e6.rna_seq.chimeric.gdc_realn.bam 33082938 BAM chimeric harmonized CPTAC3 a06ac415-de69-4400-a2d7-b66c922a4454 ca15bddc5d1683ce5aaac9524ace5c61 { 'aliquot_tag': 'ALQ_c23f314c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04853.RNA-Seq.genomic.T.hg38 C3L-04853 PDA RNA-Seq tumor CPT0248590014 89ee954a-adc3-49cb-87d5-c35d8d3782e6.rna_seq.genomic.gdc_realn.bam 8945283527 BAM genomic harmonized CPTAC3 ad6bc8c6-2f79-415a-9652-66d7a5c9ede6 decbc759091e805b602c4024bfec0c5a { 'aliquot_tag': 'ALQ_c23f314c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04853.RNA-Seq.R1_L005.T C3L-04853 PDA RNA-Seq tumor CPT0248590014 190702_UNC32-K00270_0188_BH7CLJBBXY_GGCATTCT-CTAGCTTG_S20_L005_R1_001.fastq.gz 4212126039 FASTQ R1_L005 unaligned CPTAC3 eb075015-1db4-4ac0-b1e9-b44fcf3026f9 0b31c616dde5cc051a99cda4e6edcbe7 { 'aliquot_tag': 'ALQ_c23f314c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04853.RNA-Seq.R2_L005.T C3L-04853 PDA RNA-Seq tumor CPT0248590014 190702_UNC32-K00270_0188_BH7CLJBBXY_GGCATTCT-CTAGCTTG_S20_L005_R2_001.fastq.gz 4349159879 FASTQ R2_L005 unaligned CPTAC3 b447e253-da71-4eca-8d57-bbfbc0d80095 dd28a2d91ee4763f145c2898878d1294 { 'aliquot_tag': 'ALQ_c23f314c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04853.RNA-Seq.genomic.T.hg38 C3L-04853 PDA RNA-Seq tumor CPT0248590014 89ee954a-adc3-49cb-87d5-c35d8d3782e6.rna_seq.genomic.gdc_realn.bam 8945283527 BAM genomic harmonized CPTAC3 b15b88de-7cde-4646-b3f8-80f77b77da0c decbc759091e805b602c4024bfec0c5a { 'aliquot_tag': 'ALQ_c23f314c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04853.RNA-Seq.R1_L005.T C3L-04853 PDA RNA-Seq tumor CPT0248590014 190702_UNC32-K00270_0188_BH7CLJBBXY_GGCATTCT-CTAGCTTG_S20_L005_R1_001.fastq.gz 4212126039 FASTQ R1_L005 unaligned CPTAC3 eb075015-1db4-4ac0-b1e9-b44fcf3026f9 0b31c616dde5cc051a99cda4e6edcbe7 { 'aliquot_tag': 'ALQ_c23f314c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-04853.RNA-Seq.R2_L005.T C3L-04853 PDA RNA-Seq tumor CPT0248590014 190702_UNC32-K00270_0188_BH7CLJBBXY_GGCATTCT-CTAGCTTG_S20_L005_R2_001.fastq.gz 4349159879 FASTQ R2_L005 unaligned CPTAC3 b447e253-da71-4eca-8d57-bbfbc0d80095 dd28a2d91ee4763f145c2898878d1294 { 'aliquot_tag': 'ALQ_c23f314c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3L-04853.RNA-Seq.transcriptome.T.hg38 C3L-04853 PDA RNA-Seq tumor CPT0248590014 89ee954a-adc3-49cb-87d5-c35d8d3782e6.rna_seq.transcriptome.gdc_realn.bam 11848205357 BAM transcriptome harmonized CPTAC3 98c29263-cbdb-4b22-962d-f765e68c743d bf90d80aa4386b2947756c05c219f237 { 'aliquot_tag': 'ALQ_c23f314c', 'gdc_sample_type': 'Primary Tumor' } C3L-04853.WGS.N C3L-04853 PDA WGS blood_normal CPT0248630002 CPT0248630002.WholeGenome.RP-1303.bam 76911837341 BAM aligned CPTAC3 c17a8761-2d9b-46e8-a57a-ed13aa858641 fb74c218a3e6622670214dba165c428d { 'aliquot_tag': 'ALQ_fe63cf37', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04853.WGS.N.hg38 C3L-04853 PDA WGS blood_normal CPT0248630002 bade3320-65ef-4e7b-82af-e3a0f2a88a55_wgs_gdc_realn.bam 113456877658 BAM harmonized CPTAC3 048bd256-f280-4b1b-96f6-c3c55614fa35 66e3f5e24485b7a337d0cd1f5d542f77 { 'aliquot_tag': 'ALQ_fe63cf37', 'gdc_sample_type': 'Blood Derived Normal' } @@ -16211,16 +17178,16 @@ C3L-04854.miRNA-Seq.A C3L-04854 LSCC miRNA-Seq tissue_normal CPT0289170009 20051 C3L-04854.miRNA-Seq.A.hg38 C3L-04854 LSCC miRNA-Seq tissue_normal CPT0289170009 89f35920-847b-4909-90fc-a1f7c160e93b_mirnaseq_gdc_realn.bam 186654989 BAM harmonized CPTAC3 db87d560-cdc5-48dc-bbf8-b64617a751e9 ab29d4a244ff83ad137ce25b3aa1fa86 { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04854.miRNA-Seq.T C3L-04854 LSCC miRNA-Seq tumor CPT0289110010 200224_UNC31-K00269_0267_AHC722BBXY_GTTTCG_S21_L006_R1_001.unaln.bam 206767089 BAM unaligned CPTAC3 118327e9-ff5c-47c9-a0ca-98b91e75522e abb15b0eb11e19d384b775d7557942dc { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor' } C3L-04854.miRNA-Seq.T.hg38 C3L-04854 LSCC miRNA-Seq tumor CPT0289110010 a8301e68-62f5-42b0-8341-500158c05709_mirnaseq_gdc_realn.bam 227836886 BAM harmonized CPTAC3 68c3a257-3fc8-4f4e-836b-917de6e58879 695f9659a6cb830ad63e1e618cd480b8 { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor' } -C3L-04854.RNA-Seq.chimeric.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 eb1b651c-b1df-4e70-9aee-e1eb776c262b.rna_seq.chimeric.gdc_realn.bam 32236041 BAM chimeric harmonized CPTAC3 a62afe7e-a0a4-44b8-b313-b7581c3f417c beaa6e796dcab3a1d0eae8109613b43b { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04854.RNA-Seq.chimeric.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 5ed398ca-f51e-4b45-a68d-19ed9ab722d9.rna_seq.chimeric.gdc_realn.bam 56915533 BAM chimeric harmonized CPTAC3 526ad7d0-99d4-4994-af07-0ad0c9be52c4 829b9e7686463aae7676fe2eed7f41ec { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor' } -C3L-04854.RNA-Seq.genomic.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 eb1b651c-b1df-4e70-9aee-e1eb776c262b.rna_seq.genomic.gdc_realn.bam 8737319241 BAM genomic harmonized CPTAC3 eb23f1cb-c227-45ce-b5d7-c3d20353ccb7 b9e367a3ee721877501656c1188992d0 { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04854.RNA-Seq.genomic.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 5ed398ca-f51e-4b45-a68d-19ed9ab722d9.rna_seq.genomic.gdc_realn.bam 7447811729 BAM genomic harmonized CPTAC3 00f71c2f-fbad-490b-8f4e-7dc8eb5522c7 216165ff6072f94bfd3d2fd41c352c55 { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor' } -C3L-04854.RNA-Seq.R1_L002.T C3L-04854 LSCC RNA-Seq tumor CPT0289110010 200428_UNC31-K00269_0275_AHGCJVBBXY_GCCACAGG-CATGCCAT_S5_L002_R1_001.fastq.gz 3631461374 FASTQ R1_L002 unaligned CPTAC3 f6dedc7f-4441-4178-b55f-33b8c3fa5d3c 92753ed5456798ff2af1d16062eae30c { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor' } -C3L-04854.RNA-Seq.R1_L003.A C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTTGGTAT-CCAAGTCC_S10_L003_R1_001.fastq.gz 3975190285 FASTQ R1_L003 unaligned CPTAC3 e210dc35-2884-413e-bf8b-e12fd56ba168 c60a4e62bb8b150c8aaea353f6096edb { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04854.RNA-Seq.R2_L002.T C3L-04854 LSCC RNA-Seq tumor CPT0289110010 200428_UNC31-K00269_0275_AHGCJVBBXY_GCCACAGG-CATGCCAT_S5_L002_R2_001.fastq.gz 3882433863 FASTQ R2_L002 unaligned CPTAC3 edbb4e5b-328b-4b64-86be-375330e674b2 f878dbef818e5fd9c3208c54cbd5f0ef { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor' } -C3L-04854.RNA-Seq.R2_L003.A C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTTGGTAT-CCAAGTCC_S10_L003_R2_001.fastq.gz 4833262411 FASTQ R2_L003 unaligned CPTAC3 45b60f43-be80-4b02-a2cf-edcac84968c4 e91ce44002f569984bab5d48c91982ac { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04854.RNA-Seq.transcriptome.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 eb1b651c-b1df-4e70-9aee-e1eb776c262b.rna_seq.transcriptome.gdc_realn.bam 8325709831 BAM transcriptome harmonized CPTAC3 32a6b54a-bcbc-4033-a910-c49bca2a6250 894ba14f448224c73b3c160c685471b5 { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04854.RNA-Seq.transcriptome.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 5ed398ca-f51e-4b45-a68d-19ed9ab722d9.rna_seq.transcriptome.gdc_realn.bam 9298789434 BAM transcriptome harmonized CPTAC3 f0b3c585-d245-4cdb-9eb1-cd0e7805a844 12deb0825e835a08b0b47a5cb9ef4f2b { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor' } +C3L-04854.RNA-Seq.chimeric.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 e4113b4f-1bba-4f54-9fe6-6585334e30e1.rna_seq.chimeric.gdc_realn.bam 32235044 BAM chimeric harmonized CPTAC3 dba17d1a-8ba2-491e-bfbf-6ba9fc770067 90bbd14eea83278de51d4983470eceb0 { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04854.RNA-Seq.chimeric.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 7f81570d-c46a-40c7-9c83-20bfe83611a1.rna_seq.chimeric.gdc_realn.bam 56932370 BAM chimeric harmonized CPTAC3 28bf046e-4e7a-4357-9b8d-966e899fa7b2 0a3e4c35c03eb33c191149583fb50c33 { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor' } +C3L-04854.RNA-Seq.genomic.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 e4113b4f-1bba-4f54-9fe6-6585334e30e1.rna_seq.genomic.gdc_realn.bam 8738337425 BAM genomic harmonized CPTAC3 890b8b0c-59f9-4d68-852e-c15b8edf8242 710a7920d505147ba6506d6980470855 { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04854.RNA-Seq.genomic.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 7f81570d-c46a-40c7-9c83-20bfe83611a1.rna_seq.genomic.gdc_realn.bam 7450621065 BAM genomic harmonized CPTAC3 61246977-36d9-438d-8420-38b5af605ce9 e6f4d059b5b0ee391ef6ebeda13685b7 { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor' } +C3L-04854.RNA-Seq.R1_L002.T C3L-04854 LSCC RNA-Seq tumor CPT0289110010 200428_UNC31-K00269_0275_AHGCJVBBXY_GCCACAGG-CATGCCAT_S5_L002_R1_001.fastq.gz 3631461374 FASTQ R1_L002 unaligned CPTAC3 f6dedc7f-4441-4178-b55f-33b8c3fa5d3c 92753ed5456798ff2af1d16062eae30c { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-04854.RNA-Seq.R1_L003.A C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTTGGTAT-CCAAGTCC_S10_L003_R1_001.fastq.gz 3975190285 FASTQ R1_L003 unaligned CPTAC3 e210dc35-2884-413e-bf8b-e12fd56ba168 c60a4e62bb8b150c8aaea353f6096edb { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-04854.RNA-Seq.R2_L002.T C3L-04854 LSCC RNA-Seq tumor CPT0289110010 200428_UNC31-K00269_0275_AHGCJVBBXY_GCCACAGG-CATGCCAT_S5_L002_R2_001.fastq.gz 3882433863 FASTQ R2_L002 unaligned CPTAC3 edbb4e5b-328b-4b64-86be-375330e674b2 f878dbef818e5fd9c3208c54cbd5f0ef { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-04854.RNA-Seq.R2_L003.A C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTTGGTAT-CCAAGTCC_S10_L003_R2_001.fastq.gz 4833262411 FASTQ R2_L003 unaligned CPTAC3 45b60f43-be80-4b02-a2cf-edcac84968c4 e91ce44002f569984bab5d48c91982ac { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-04854.RNA-Seq.transcriptome.A.hg38 C3L-04854 LSCC RNA-Seq tissue_normal CPT0289170009 e4113b4f-1bba-4f54-9fe6-6585334e30e1.rna_seq.transcriptome.gdc_realn.bam 9408570265 BAM transcriptome harmonized CPTAC3 b55fc703-e183-49f4-86f6-ef34a135429a 62a08c2378b9c9d063e0e4a146acab2c { 'aliquot_tag': 'ALQ_70ec9e3c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04854.RNA-Seq.transcriptome.T.hg38 C3L-04854 LSCC RNA-Seq tumor CPT0289110010 7f81570d-c46a-40c7-9c83-20bfe83611a1.rna_seq.transcriptome.gdc_realn.bam 10324545444 BAM transcriptome harmonized CPTAC3 60c84eb0-b43a-4078-9a77-d2352f4d2b3d c8ad7fc1781279e097002f7b674ac540 { 'aliquot_tag': 'ALQ_9f6be279', 'gdc_sample_type': 'Primary Tumor' } C3L-04854.WGS.N C3L-04854 LSCC WGS blood_normal CPT0289270002 CPT0289270002.WholeGenome.RP-2158.bam 21471712355 BAM aligned CPTAC3 8fd6041b-d9aa-4c0c-9a42-b324dd126928 dc0d2145665b3eca46ae8dd5b7b4e083 { 'aliquot_tag': 'ALQ_61aa351a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04854.WGS.N.hg38 C3L-04854 LSCC WGS blood_normal CPT0289270002 d6b4852d-f75b-437d-9a33-41f25cad0437_wgs_gdc_realn.bam 63989641478 BAM harmonized CPTAC3 4e87e15b-8d04-47e2-a208-34ad0ecedaed ace79db7e563705380fea35dffe19c20 { 'aliquot_tag': 'ALQ_61aa351a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04854.WGS.T C3L-04854 LSCC WGS tumor CPT0289110007 CPT0289110007.WholeGenome.RP-2158.bam 26573114416 BAM aligned CPTAC3 3b05623a-f6f5-414e-a24f-69e4673d0f80 dbaea88b7ce683d70b9639b8c18a18dc { 'aliquot_tag': 'ALQ_1814469b', 'gdc_sample_type': 'Primary Tumor' } @@ -16237,11 +17204,11 @@ C3L-04856.MethArray.Red.A C3L-04856 LSCC Methylation Array tissue_normal CPT0289 C3L-04856.MethArray.Red.T C3L-04856 LSCC Methylation Array tumor CPT0289330006 204372030011_R06C01_Red.idat 13677890 IDAT Red NA CPTAC3 a417653b-cd5d-4a0c-a818-5e2588f57466 14c4f606b1e3e47d19694a175c65d232 { 'aliquot_tag': 'ALQ_581b8466', 'gdc_sample_type': 'Primary Tumor' } C3L-04856.miRNA-Seq.T C3L-04856 LSCC miRNA-Seq tumor CPT0289330009 200224_UNC31-K00269_0267_AHC722BBXY_CGTACG_S22_L006_R1_001.unaln.bam 163739169 BAM unaligned CPTAC3 efee3a28-4d65-4e74-96b9-21e26cd127ed 46c119dc81545e48c679dae2353f659e { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor' } C3L-04856.miRNA-Seq.T.hg38 C3L-04856 LSCC miRNA-Seq tumor CPT0289330009 fad7449c-b011-455d-b9e2-b9e9d574a013_mirnaseq_gdc_realn.bam 179281313 BAM harmonized CPTAC3 9032c90a-56e2-4cc5-9842-00c46b88da37 72a9edfcc04dd277827d7e2c9a76a728 { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04856.RNA-Seq.chimeric.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 3ef46524-9b44-403e-a597-f6f9e0f49169.rna_seq.chimeric.gdc_realn.bam 47218417 BAM chimeric harmonized CPTAC3 effa5bbb-29d3-4174-9b02-3791f32ae5e8 f9dc4539e1ce7c4bb53e3f3aeebe6ce4 { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04856.RNA-Seq.genomic.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 3ef46524-9b44-403e-a597-f6f9e0f49169.rna_seq.genomic.gdc_realn.bam 7860286280 BAM genomic harmonized CPTAC3 ec076a77-8101-421b-afd6-dfa044543e9c 2819f7b4da837fc56cb8ce0e125318b5 { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04856.RNA-Seq.R1_L002.T C3L-04856 LSCC RNA-Seq tumor CPT0289330009 200428_UNC31-K00269_0275_AHGCJVBBXY_ATTGTGAA-TGCATTGC_S6_L002_R1_001.fastq.gz 3782200705 FASTQ R1_L002 unaligned CPTAC3 9f9f631e-d684-4940-88d5-2e80f0feac26 58944e11bd5eb5479a3300e42dad7ebe { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04856.RNA-Seq.R2_L002.T C3L-04856 LSCC RNA-Seq tumor CPT0289330009 200428_UNC31-K00269_0275_AHGCJVBBXY_ATTGTGAA-TGCATTGC_S6_L002_R2_001.fastq.gz 3990363868 FASTQ R2_L002 unaligned CPTAC3 ae42bf00-7b1c-4d7d-95eb-bf93b4d1a727 157a153208caf15e47d974da669f1e01 { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04856.RNA-Seq.transcriptome.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 3ef46524-9b44-403e-a597-f6f9e0f49169.rna_seq.transcriptome.gdc_realn.bam 7867551001 BAM transcriptome harmonized CPTAC3 a2b61463-c143-40b3-a12d-230b534432f1 984751c86bf8d577e807e786520226bf { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04856.RNA-Seq.chimeric.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 cc81025c-a896-471f-acdb-988b90e41312.rna_seq.chimeric.gdc_realn.bam 47201994 BAM chimeric harmonized CPTAC3 90a5f1e8-7915-4877-800d-e68d3746c30a ab7ed9f634470740bd6586c5134ecbfb { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04856.RNA-Seq.genomic.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 cc81025c-a896-471f-acdb-988b90e41312.rna_seq.genomic.gdc_realn.bam 7861630886 BAM genomic harmonized CPTAC3 4f54d8f4-b16d-41ad-ab9c-0117f0b49b5c 308483727a408945bd59f47c340e7ed7 { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04856.RNA-Seq.R1_L002.T C3L-04856 LSCC RNA-Seq tumor CPT0289330009 200428_UNC31-K00269_0275_AHGCJVBBXY_ATTGTGAA-TGCATTGC_S6_L002_R1_001.fastq.gz 3782200705 FASTQ R1_L002 unaligned CPTAC3 9f9f631e-d684-4940-88d5-2e80f0feac26 58944e11bd5eb5479a3300e42dad7ebe { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-04856.RNA-Seq.R2_L002.T C3L-04856 LSCC RNA-Seq tumor CPT0289330009 200428_UNC31-K00269_0275_AHGCJVBBXY_ATTGTGAA-TGCATTGC_S6_L002_R2_001.fastq.gz 3990363868 FASTQ R2_L002 unaligned CPTAC3 ae42bf00-7b1c-4d7d-95eb-bf93b4d1a727 157a153208caf15e47d974da669f1e01 { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-04856.RNA-Seq.transcriptome.T.hg38 C3L-04856 LSCC RNA-Seq tumor CPT0289330009 cc81025c-a896-471f-acdb-988b90e41312.rna_seq.transcriptome.gdc_realn.bam 8869230389 BAM transcriptome harmonized CPTAC3 0ec489da-8b1b-4f50-879c-a9af84284ff4 5f20e2b0cacfbcfddbf1f40fc129f57d { 'aliquot_tag': 'ALQ_c8a499f7', 'gdc_sample_type': 'Primary Tumor' } C3L-04856.WGS.N C3L-04856 LSCC WGS blood_normal CPT0289530002 CPT0289530002.WholeGenome.RP-2158.bam 25005609704 BAM aligned CPTAC3 d41c4029-eb6d-41d2-a618-08cbbaa1111d 716e3f51bee1f6324276b305a87c588f { 'aliquot_tag': 'ALQ_892fa362', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04856.WGS.N.hg38 C3L-04856 LSCC WGS blood_normal CPT0289530002 6aef6afc-a1f6-4f73-978f-39455316c95a_wgs_gdc_realn.bam 73268514213 BAM harmonized CPTAC3 7cda4212-99fa-42df-937b-7eb1e7f90ad3 28813f0abe7169d5789ce204712bc0c8 { 'aliquot_tag': 'ALQ_892fa362', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04856.WGS.T C3L-04856 LSCC WGS tumor CPT0289330006 CPT0289330006.WholeGenome.RP-2158.bam 25366672311 BAM aligned CPTAC3 cac3d6d7-8dad-43ee-b596-bd3098f022ab a6624dbee473cb543459876601eac0fc { 'aliquot_tag': 'ALQ_581b8466', 'gdc_sample_type': 'Primary Tumor' } @@ -16260,16 +17227,16 @@ C3L-04861.miRNA-Seq.A C3L-04861 LSCC miRNA-Seq tissue_normal CPT0289600009 20051 C3L-04861.miRNA-Seq.A.hg38 C3L-04861 LSCC miRNA-Seq tissue_normal CPT0289600009 3cb84c11-8a0a-41e5-b48c-12f7b52d2090_mirnaseq_gdc_realn.bam 211138254 BAM harmonized CPTAC3 b537707b-8c8c-4229-9b42-8158fa6051a2 eafc16e5dc28d95971544e96e46b7345 { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04861.miRNA-Seq.T C3L-04861 LSCC miRNA-Seq tumor CPT0289560009 200224_UNC31-K00269_0267_AHC722BBXY_GAGTGG_S23_L006_R1_001.unaln.bam 221384567 BAM unaligned CPTAC3 ee37b7d7-4671-4821-8af8-f3d82d44b75c e51e102d79a0d134792a2b2a7dac2407 { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor' } C3L-04861.miRNA-Seq.T.hg38 C3L-04861 LSCC miRNA-Seq tumor CPT0289560009 0518d91d-2768-49a4-b339-76e2b83bcf49_mirnaseq_gdc_realn.bam 248559750 BAM harmonized CPTAC3 300fabe3-599e-4e41-9474-88a23f44dad2 2b3412877b91faa6256d02c75391ceb7 { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04861.RNA-Seq.chimeric.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 15fd12d1-57c9-4544-9088-1a7b755d8540.rna_seq.chimeric.gdc_realn.bam 30158526 BAM chimeric harmonized CPTAC3 c3b8db75-ffe2-4ee2-81d4-740b780efea6 8062752bdbf0982f565e91153d1add09 { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04861.RNA-Seq.chimeric.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 1b7e6491-9db0-4467-9597-37d60c2fc19b.rna_seq.chimeric.gdc_realn.bam 51087826 BAM chimeric harmonized CPTAC3 552c361f-d28f-4a9c-953f-9292aaef0510 6279b45d462a6bf8a3ea91ac8c0735a4 { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04861.RNA-Seq.genomic.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 15fd12d1-57c9-4544-9088-1a7b755d8540.rna_seq.genomic.gdc_realn.bam 9462851708 BAM genomic harmonized CPTAC3 1a76b6ef-056b-47f7-a9d5-125d5f2eac39 f4cdf43fbf3434a377e0b0041e7121b4 { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04861.RNA-Seq.genomic.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 1b7e6491-9db0-4467-9597-37d60c2fc19b.rna_seq.genomic.gdc_realn.bam 7823648181 BAM genomic harmonized CPTAC3 8625aaee-9ed1-40f9-b284-d99ccb23df18 b7ae6378b4571d7e3821d39d1a026fac { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04861.RNA-Seq.R1_L002.T C3L-04861 LSCC RNA-Seq tumor CPT0289560009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACTCGTGT-ATTGGAAC_S7_L002_R1_001.fastq.gz 3796378318 FASTQ R1_L002 unaligned CPTAC3 4740154b-84b2-4e0b-89ba-a8acf8a35938 e2235773bf574fe1adcc8a5973402622 { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04861.RNA-Seq.R1_L003.A C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 4056010431 FASTQ R1_L003 unaligned CPTAC3 e383fa02-0d44-4d97-a7ca-a5f047102b98 93661a0bcae87dba473af0a9bf1d9f30 { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04861.RNA-Seq.R2_L002.T C3L-04861 LSCC RNA-Seq tumor CPT0289560009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACTCGTGT-ATTGGAAC_S7_L002_R2_001.fastq.gz 4044369499 FASTQ R2_L002 unaligned CPTAC3 3753c93c-35c0-43a3-b8b7-6d8a7a8ab028 5b11a1b70af90e32aaf849ca08aa64ec { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04861.RNA-Seq.R2_L003.A C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 5075923519 FASTQ R2_L003 unaligned CPTAC3 ecc97835-799a-456c-9901-244f0947c7eb 3f25e75ed5361b4d842728be1581b087 { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04861.RNA-Seq.transcriptome.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 15fd12d1-57c9-4544-9088-1a7b755d8540.rna_seq.transcriptome.gdc_realn.bam 9452671125 BAM transcriptome harmonized CPTAC3 7cd83d0b-7c47-40bd-87fd-dd2d645cf281 5cc9013c65497cc800767096d878e994 { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04861.RNA-Seq.transcriptome.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 1b7e6491-9db0-4467-9597-37d60c2fc19b.rna_seq.transcriptome.gdc_realn.bam 11141775436 BAM transcriptome harmonized CPTAC3 ee4f1e66-4a4e-4329-8033-f75e603fcbe8 60e4354b6ac238d687e0f4d2f59098f5 { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04861.RNA-Seq.chimeric.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 08895bdb-8fa2-414e-b1d2-d5e94b16fd9b.rna_seq.chimeric.gdc_realn.bam 30194602 BAM chimeric harmonized CPTAC3 c31d582b-2aec-43aa-bfd8-cf3e78f7a1a8 6bddedc60085cc8ddb8c3e691cf23902 { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04861.RNA-Seq.chimeric.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 831e8117-8bc0-4be4-a426-288a8b6fd522.rna_seq.chimeric.gdc_realn.bam 51094141 BAM chimeric harmonized CPTAC3 68cb1593-90fd-47ad-85d8-30f6c1710a94 25cb7ec5c2bbbc671d6b1edd72539f6a { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04861.RNA-Seq.genomic.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 08895bdb-8fa2-414e-b1d2-d5e94b16fd9b.rna_seq.genomic.gdc_realn.bam 9464112658 BAM genomic harmonized CPTAC3 1a0b5923-38eb-4145-b147-634ff8f0e6af 5a5328c1943ecd5d35d1fece867cdb0a { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04861.RNA-Seq.genomic.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 831e8117-8bc0-4be4-a426-288a8b6fd522.rna_seq.genomic.gdc_realn.bam 7826236685 BAM genomic harmonized CPTAC3 31ea4ec5-dfba-47be-8da7-ad3fab8c0a00 7b50b7591324ff70e0bf3a3dedda0672 { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04861.RNA-Seq.R1_L002.T C3L-04861 LSCC RNA-Seq tumor CPT0289560009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACTCGTGT-ATTGGAAC_S7_L002_R1_001.fastq.gz 3796378318 FASTQ R1_L002 unaligned CPTAC3 4740154b-84b2-4e0b-89ba-a8acf8a35938 e2235773bf574fe1adcc8a5973402622 { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-04861.RNA-Seq.R1_L003.A C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 4056010431 FASTQ R1_L003 unaligned CPTAC3 e383fa02-0d44-4d97-a7ca-a5f047102b98 93661a0bcae87dba473af0a9bf1d9f30 { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-04861.RNA-Seq.R2_L002.T C3L-04861 LSCC RNA-Seq tumor CPT0289560009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACTCGTGT-ATTGGAAC_S7_L002_R2_001.fastq.gz 4044369499 FASTQ R2_L002 unaligned CPTAC3 3753c93c-35c0-43a3-b8b7-6d8a7a8ab028 5b11a1b70af90e32aaf849ca08aa64ec { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-04861.RNA-Seq.R2_L003.A C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 5075923519 FASTQ R2_L003 unaligned CPTAC3 ecc97835-799a-456c-9901-244f0947c7eb 3f25e75ed5361b4d842728be1581b087 { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-04861.RNA-Seq.transcriptome.A.hg38 C3L-04861 LSCC RNA-Seq tissue_normal CPT0289600009 08895bdb-8fa2-414e-b1d2-d5e94b16fd9b.rna_seq.transcriptome.gdc_realn.bam 10556649114 BAM transcriptome harmonized CPTAC3 d0f65683-f372-47a7-8194-062ff3d24843 76f595c1c585eb8333f4fc88bd15ad47 { 'aliquot_tag': 'ALQ_dfc97294', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04861.RNA-Seq.transcriptome.T.hg38 C3L-04861 LSCC RNA-Seq tumor CPT0289560009 831e8117-8bc0-4be4-a426-288a8b6fd522.rna_seq.transcriptome.gdc_realn.bam 12337923939 BAM transcriptome harmonized CPTAC3 8a0b4f45-c652-49a3-afea-4ec4aec03c15 65256f6333996b9ed28af5b47b2da0c5 { 'aliquot_tag': 'ALQ_d61df59a', 'gdc_sample_type': 'Primary Tumor' } C3L-04861.WGS.N C3L-04861 LSCC WGS blood_normal CPT0289710002 CPT0289710002.WholeGenome.RP-2158.bam 29698919285 BAM aligned CPTAC3 9aa41222-d684-4b66-943f-d0fd3ffc3bea df9c00f331129cccb664535c9bf52122 { 'aliquot_tag': 'ALQ_be275109', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04861.WGS.N.hg38 C3L-04861 LSCC WGS blood_normal CPT0289710002 587a77b0-d172-490c-991d-1c6fdcb4c093_wgs_gdc_realn.bam 88702414451 BAM harmonized CPTAC3 189d7b19-780a-4bcc-ab76-aa8fc677b27b bdce1bb876b05f2023241d13afcd2484 { 'aliquot_tag': 'ALQ_be275109', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04861.WGS.T C3L-04861 LSCC WGS tumor CPT0289560006 CPT0289560006.WholeGenome.RP-2158.bam 25594847520 BAM aligned CPTAC3 eabdf2c8-2b33-4fbd-b0ea-d8009e308a5a 7382caf9f788977f6092f892de968cfd { 'aliquot_tag': 'ALQ_46a2e80b', 'gdc_sample_type': 'Primary Tumor' } @@ -16288,16 +17255,16 @@ C3L-04866.miRNA-Seq.A C3L-04866 LSCC miRNA-Seq tissue_normal CPT0255430009 20051 C3L-04866.miRNA-Seq.A.hg38 C3L-04866 LSCC miRNA-Seq tissue_normal CPT0255430009 3b9e7be4-230a-4520-82c3-18578f83600f_mirnaseq_gdc_realn.bam 315603629 BAM harmonized CPTAC3 8d8a3cbc-fec8-4f1c-9810-15c31e7f9d4d 8f03ec188dbce0f3060e4b6c07ad3ee6 { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04866.miRNA-Seq.T C3L-04866 LSCC miRNA-Seq tumor CPT0255420009 200224_UNC31-K00269_0267_AHC722BBXY_TAATCG_S42_L007_R1_001.unaln.bam 223534305 BAM unaligned CPTAC3 289c7cfb-7486-45ce-96a2-5d8ea64bf3c4 972acd4739d7db17e74483319a50723c { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor' } C3L-04866.miRNA-Seq.T.hg38 C3L-04866 LSCC miRNA-Seq tumor CPT0255420009 4c804429-afc8-4c00-bb4e-ede228b64183_mirnaseq_gdc_realn.bam 248946602 BAM harmonized CPTAC3 9e19915a-8e6b-444e-97a7-8b544fa2fc2d eb15aa9dd138d6d3b3c65ff1251c49ce { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04866.RNA-Seq.chimeric.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 a7441582-08e2-4bb1-9aae-cdfeec1c6023.rna_seq.chimeric.gdc_realn.bam 89311137 BAM chimeric harmonized CPTAC3 71f4f408-820a-4d66-a07c-96c119c29f69 0da26f2f60bb044f3b631594e34bcb66 { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04866.RNA-Seq.chimeric.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 193a01e6-60d4-4e3c-95c4-c8b23001a5fc.rna_seq.chimeric.gdc_realn.bam 31100999 BAM chimeric harmonized CPTAC3 000915af-c77a-4008-a027-dd2cb4082872 b2092dfefe7472e410186ff2b53bb54f { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04866.RNA-Seq.genomic.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 a7441582-08e2-4bb1-9aae-cdfeec1c6023.rna_seq.genomic.gdc_realn.bam 7678575637 BAM genomic harmonized CPTAC3 c87b9ca7-09d3-4e4a-bacf-47820f2b72d3 7d217cd7e0a9a70328763d207f2002f2 { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04866.RNA-Seq.genomic.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 193a01e6-60d4-4e3c-95c4-c8b23001a5fc.rna_seq.genomic.gdc_realn.bam 7930809826 BAM genomic harmonized CPTAC3 8813c625-da7f-4d17-9bec-0e8d56c67009 49821c7d51f7cd9bbd25c9bdf985df05 { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04866.RNA-Seq.R1_L002.A C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGTGGCA-TCCTGTAA_S8_L002_R1_001.fastq.gz 3747384627 FASTQ R1_L002 unaligned CPTAC3 20067dc4-1b7a-433b-8261-91bf2ba952fe fad0bf47fdd6147b3b89ad27de582ee6 { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04866.RNA-Seq.R1_L003.T C3L-04866 LSCC RNA-Seq tumor CPT0255420009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCAAGC-TCACGCCG_S10_L003_R1_001.fastq.gz 3879397988 FASTQ R1_L003 unaligned CPTAC3 6bde87a0-821b-4c0d-8346-f9ec89d3ee6e 80775610a6d3669eb25a4a5f0be6d990 { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04866.RNA-Seq.R2_L002.A C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGTGGCA-TCCTGTAA_S8_L002_R2_001.fastq.gz 4197482715 FASTQ R2_L002 unaligned CPTAC3 3f986b3d-e2bc-42b9-a91e-7c3969a6177f d8a08371866c1665ec5373a2a8a114ef { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04866.RNA-Seq.R2_L003.T C3L-04866 LSCC RNA-Seq tumor CPT0255420009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCAAGC-TCACGCCG_S10_L003_R2_001.fastq.gz 4125265787 FASTQ R2_L003 unaligned CPTAC3 d07eefdf-b5cf-4d00-a0d5-a808bfe25fb8 177b539a139fec558cf58b6ac7def804 { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor' } -C3L-04866.RNA-Seq.transcriptome.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 a7441582-08e2-4bb1-9aae-cdfeec1c6023.rna_seq.transcriptome.gdc_realn.bam 8257940143 BAM transcriptome harmonized CPTAC3 b1a75f71-c07c-4758-8dd2-711b31d5b5b2 cf5f1644132d6015af84727965d8288a { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04866.RNA-Seq.transcriptome.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 193a01e6-60d4-4e3c-95c4-c8b23001a5fc.rna_seq.transcriptome.gdc_realn.bam 9184299405 BAM transcriptome harmonized CPTAC3 2dae8431-7d3a-4e5f-be4d-90ab2604aa21 40e1732789aa2dca1e8cb95b2763ab46 { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04866.RNA-Seq.chimeric.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 2c987f73-71e4-4417-beb2-9fbd46b8278c.rna_seq.chimeric.gdc_realn.bam 89293528 BAM chimeric harmonized CPTAC3 7b974317-a643-4569-8e4a-e3b37b7bfe96 842571d56f628955cc14e931d7d7b18f { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04866.RNA-Seq.chimeric.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 40805f0f-fed5-4e91-a324-b22ea5d7dd3c.rna_seq.chimeric.gdc_realn.bam 31104220 BAM chimeric harmonized CPTAC3 d621c9df-0bdd-4314-8616-0fdb7900d39f 61f8d84719132cd28d1a7d632440d56f { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04866.RNA-Seq.genomic.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 2c987f73-71e4-4417-beb2-9fbd46b8278c.rna_seq.genomic.gdc_realn.bam 7679577844 BAM genomic harmonized CPTAC3 1385e0a9-459a-4ca4-8f92-7a76ad97ceb2 83762129b58fc64743f40fadaa76fc1b { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04866.RNA-Seq.genomic.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 40805f0f-fed5-4e91-a324-b22ea5d7dd3c.rna_seq.genomic.gdc_realn.bam 7931975771 BAM genomic harmonized CPTAC3 f8a32cea-38e3-4d01-ad79-aada97780c58 9a268b33a9689863cc579ce70fcdce54 { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor' } +C3L-04866.RNA-Seq.R1_L002.A C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGTGGCA-TCCTGTAA_S8_L002_R1_001.fastq.gz 3747384627 FASTQ R1_L002 unaligned CPTAC3 20067dc4-1b7a-433b-8261-91bf2ba952fe fad0bf47fdd6147b3b89ad27de582ee6 { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-04866.RNA-Seq.R1_L003.T C3L-04866 LSCC RNA-Seq tumor CPT0255420009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCAAGC-TCACGCCG_S10_L003_R1_001.fastq.gz 3879397988 FASTQ R1_L003 unaligned CPTAC3 6bde87a0-821b-4c0d-8346-f9ec89d3ee6e 80775610a6d3669eb25a4a5f0be6d990 { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-04866.RNA-Seq.R2_L002.A C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 200505_UNC31-K00269_0277_AHGFKNBBXY_TGGTGGCA-TCCTGTAA_S8_L002_R2_001.fastq.gz 4197482715 FASTQ R2_L002 unaligned CPTAC3 3f986b3d-e2bc-42b9-a91e-7c3969a6177f d8a08371866c1665ec5373a2a8a114ef { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-04866.RNA-Seq.R2_L003.T C3L-04866 LSCC RNA-Seq tumor CPT0255420009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCGCAAGC-TCACGCCG_S10_L003_R2_001.fastq.gz 4125265787 FASTQ R2_L003 unaligned CPTAC3 d07eefdf-b5cf-4d00-a0d5-a808bfe25fb8 177b539a139fec558cf58b6ac7def804 { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-04866.RNA-Seq.transcriptome.A.hg38 C3L-04866 LSCC RNA-Seq tissue_normal CPT0255430009 2c987f73-71e4-4417-beb2-9fbd46b8278c.rna_seq.transcriptome.gdc_realn.bam 9424415884 BAM transcriptome harmonized CPTAC3 49b80667-238e-48da-828f-34435468c882 831f6a1ce1fce6fa75d50a6ace322a83 { 'aliquot_tag': 'ALQ_8904d6ea', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04866.RNA-Seq.transcriptome.T.hg38 C3L-04866 LSCC RNA-Seq tumor CPT0255420009 40805f0f-fed5-4e91-a324-b22ea5d7dd3c.rna_seq.transcriptome.gdc_realn.bam 10318638609 BAM transcriptome harmonized CPTAC3 5bf9a606-5857-46de-8799-cb10da5850fc 25388e6255234661173bf89b53cf5300 { 'aliquot_tag': 'ALQ_b464ff5a', 'gdc_sample_type': 'Primary Tumor' } C3L-04866.WGS.N C3L-04866 LSCC WGS blood_normal CPT0269240002 CPT0269240002.WholeGenome.RP-2158.bam 26984518666 BAM aligned CPTAC3 2b508c6c-a82b-4f70-8ed9-13b2b879c134 4eff9bf9b7241f3d4f784b418cf0cd3b { 'aliquot_tag': 'ALQ_33805df8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04866.WGS.N.hg38 C3L-04866 LSCC WGS blood_normal CPT0269240002 70bb1e58-a17c-4f61-b263-94f490da2e9c_wgs_gdc_realn.bam 79600797309 BAM harmonized CPTAC3 f11a5195-8153-43a1-ba5b-681000d65a1c 12604376025bda452257fca560a2d44b { 'aliquot_tag': 'ALQ_33805df8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04866.WGS.T C3L-04866 LSCC WGS tumor CPT0255420006 CPT0255420006.WholeGenome.RP-2158.bam 23735728134 BAM aligned CPTAC3 c9ed18a4-a511-40d9-8298-875409a6d59c 374b84550f2fb631f25882bace0185e6 { 'aliquot_tag': 'ALQ_24dbe2cb', 'gdc_sample_type': 'Primary Tumor' } @@ -16316,16 +17283,16 @@ C3L-04868.miRNA-Seq.A C3L-04868 LSCC miRNA-Seq tissue_normal CPT0252960006 20051 C3L-04868.miRNA-Seq.A.hg38 C3L-04868 LSCC miRNA-Seq tissue_normal CPT0252960006 d6d02fe9-3a3d-4b62-9aaa-80a844da95e6_mirnaseq_gdc_realn.bam 254167565 BAM harmonized CPTAC3 335b0781-fda3-487c-bb57-9226bba9e7b3 e6b8a3f51cafb3b9178b8c715e91240b { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04868.miRNA-Seq.T C3L-04868 LSCC miRNA-Seq tumor CPT0252940009 200224_UNC31-K00269_0267_AHC722BBXY_ATTCCT_S27_L007_R1_001.unaln.bam 161639240 BAM unaligned CPTAC3 7823198e-6569-4c0f-ac30-ae521fd6123e d591e14b843b0059ec03ee1d18433d51 { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor' } C3L-04868.miRNA-Seq.T.hg38 C3L-04868 LSCC miRNA-Seq tumor CPT0252940009 7654ed03-dff3-467b-890a-0cebb7fc8d59_mirnaseq_gdc_realn.bam 177255435 BAM harmonized CPTAC3 e34edbcc-2412-4df0-b80e-5e125f746d02 d77ad88dd1a1c2596e373d68a2c02bfc { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-04868.RNA-Seq.chimeric.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 4b2e762c-91c8-4cd3-8e2f-8b865e47ea85.rna_seq.chimeric.gdc_realn.bam 39188905 BAM chimeric harmonized CPTAC3 62ee78fb-f0c8-4fe2-b7c9-f2222c8b1565 78a6c52d2d70b6884ad77146bc80884e { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04868.RNA-Seq.chimeric.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 3a82d05a-ceb4-48a8-9f83-2df9f511f684.rna_seq.chimeric.gdc_realn.bam 40276739 BAM chimeric harmonized CPTAC3 a8a1d048-cef4-4d39-b315-95714116f756 4b7e0a6ad30db20a95b664f6738bf0a6 { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-04868.RNA-Seq.genomic.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 4b2e762c-91c8-4cd3-8e2f-8b865e47ea85.rna_seq.genomic.gdc_realn.bam 9680464226 BAM genomic harmonized CPTAC3 8dc8e06b-fd33-4539-b7d3-2e63de51611b ac41d6bb7d5df075729c1745a926d3ac { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04868.RNA-Seq.genomic.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 3a82d05a-ceb4-48a8-9f83-2df9f511f684.rna_seq.genomic.gdc_realn.bam 7563941041 BAM genomic harmonized CPTAC3 5410f3d0-6f03-406f-8dfd-267b9afc04a9 2cbd55f7b78c2cd080d74c36f97da88a { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-04868.RNA-Seq.R1_L003.T C3L-04868 LSCC RNA-Seq tumor CPT0252940009 200428_UNC31-K00269_0276_BHH5TMBBXY_CTTGGTAT-CCAAGTCC_S11_L003_R1_001.fastq.gz 3691927643 FASTQ R1_L003 unaligned CPTAC3 ca162531-b8ee-4f2d-9e6b-1b62145949d4 e414b3abe16d769d1ef931d0b761b653 { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-04868.RNA-Seq.R1_L007.A C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 200505_UNC32-K00270_0246_BHH5F5BBXY_ATATGGAT-CTGTATTA_S26_L007_R1_001.fastq.gz 4515297792 FASTQ R1_L007 unaligned CPTAC3 d631702e-a9e8-428f-94f6-af371554432e 415ee39c97237621ff3362fb36348a94 { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04868.RNA-Seq.R2_L003.T C3L-04868 LSCC RNA-Seq tumor CPT0252940009 200428_UNC31-K00269_0276_BHH5TMBBXY_CTTGGTAT-CCAAGTCC_S11_L003_R2_001.fastq.gz 4102057523 FASTQ R2_L003 unaligned CPTAC3 ef34ca3b-b988-42ce-afb5-6c263eaf3e20 0cc17af699af383f132701cda1658ce0 { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor' } -C3L-04868.RNA-Seq.R2_L007.A C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 200505_UNC32-K00270_0246_BHH5F5BBXY_ATATGGAT-CTGTATTA_S26_L007_R2_001.fastq.gz 5456454667 FASTQ R2_L007 unaligned CPTAC3 b3cb045f-cbee-4b2b-a2b7-b9240a36b6b5 ddb2b811332f65df3927e030ff3f55a6 { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04868.RNA-Seq.transcriptome.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 4b2e762c-91c8-4cd3-8e2f-8b865e47ea85.rna_seq.transcriptome.gdc_realn.bam 10116562026 BAM transcriptome harmonized CPTAC3 aca22753-d6b8-4cd7-b994-324f097eb47d f8ded11c71ff79fe0c5f541f9ea8f2d3 { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04868.RNA-Seq.transcriptome.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 3a82d05a-ceb4-48a8-9f83-2df9f511f684.rna_seq.transcriptome.gdc_realn.bam 8222327367 BAM transcriptome harmonized CPTAC3 0fb6e3d2-0a95-4b2f-b34c-f173e036ee65 e867691623f927e468212a254435902a { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-04868.RNA-Seq.chimeric.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 a374352b-7c73-48d6-998b-78d0329714cc.rna_seq.chimeric.gdc_realn.bam 39185371 BAM chimeric harmonized CPTAC3 960b3f47-ada2-45f3-985d-7cd0b1887672 6bb7cf6cbae45bb1db53ec10ed135d2b { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04868.RNA-Seq.chimeric.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 9830f10f-060b-4beb-a341-7c205db56ee0.rna_seq.chimeric.gdc_realn.bam 40273929 BAM chimeric harmonized CPTAC3 3483cef9-abff-4744-bee3-901006e0c79b 325535c31b4873e75b9659260b43aac1 { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-04868.RNA-Seq.genomic.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 a374352b-7c73-48d6-998b-78d0329714cc.rna_seq.genomic.gdc_realn.bam 9681721150 BAM genomic harmonized CPTAC3 fe96a236-c72e-48b8-9268-61e86c8de8b7 e39644e2e174a0bd24080f8d02d33680 { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04868.RNA-Seq.genomic.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 9830f10f-060b-4beb-a341-7c205db56ee0.rna_seq.genomic.gdc_realn.bam 7564997586 BAM genomic harmonized CPTAC3 509432e6-0777-4a50-95bb-13f494926f75 50ff5867e95f143bc2274c9b22741f46 { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor' } +C3L-04868.RNA-Seq.R1_L003.T C3L-04868 LSCC RNA-Seq tumor CPT0252940009 200428_UNC31-K00269_0276_BHH5TMBBXY_CTTGGTAT-CCAAGTCC_S11_L003_R1_001.fastq.gz 3691927643 FASTQ R1_L003 unaligned CPTAC3 ca162531-b8ee-4f2d-9e6b-1b62145949d4 e414b3abe16d769d1ef931d0b761b653 { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-04868.RNA-Seq.R1_L007.A C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 200505_UNC32-K00270_0246_BHH5F5BBXY_ATATGGAT-CTGTATTA_S26_L007_R1_001.fastq.gz 4515297792 FASTQ R1_L007 unaligned CPTAC3 d631702e-a9e8-428f-94f6-af371554432e 415ee39c97237621ff3362fb36348a94 { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-04868.RNA-Seq.R2_L003.T C3L-04868 LSCC RNA-Seq tumor CPT0252940009 200428_UNC31-K00269_0276_BHH5TMBBXY_CTTGGTAT-CCAAGTCC_S11_L003_R2_001.fastq.gz 4102057523 FASTQ R2_L003 unaligned CPTAC3 ef34ca3b-b988-42ce-afb5-6c263eaf3e20 0cc17af699af383f132701cda1658ce0 { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-04868.RNA-Seq.R2_L007.A C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 200505_UNC32-K00270_0246_BHH5F5BBXY_ATATGGAT-CTGTATTA_S26_L007_R2_001.fastq.gz 5456454667 FASTQ R2_L007 unaligned CPTAC3 b3cb045f-cbee-4b2b-a2b7-b9240a36b6b5 ddb2b811332f65df3927e030ff3f55a6 { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-04868.RNA-Seq.transcriptome.A.hg38 C3L-04868 LSCC RNA-Seq tissue_normal CPT0252960006 a374352b-7c73-48d6-998b-78d0329714cc.rna_seq.transcriptome.gdc_realn.bam 11564778033 BAM transcriptome harmonized CPTAC3 add2061d-b119-4a56-b726-076e84b42bb2 da256c6f7fe82046410adfc402405a33 { 'aliquot_tag': 'ALQ_a862695b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04868.RNA-Seq.transcriptome.T.hg38 C3L-04868 LSCC RNA-Seq tumor CPT0252940009 9830f10f-060b-4beb-a341-7c205db56ee0.rna_seq.transcriptome.gdc_realn.bam 9349751464 BAM transcriptome harmonized CPTAC3 5ff2c5ff-b652-4c0a-92ce-c4ec6219e4e7 88aed4350834f2cda7f17a5e83dc94fd { 'aliquot_tag': 'ALQ_421d27aa', 'gdc_sample_type': 'Primary Tumor' } C3L-04868.WGS.N C3L-04868 LSCC WGS blood_normal CPT0253060002 CPT0253060002.WholeGenome.RP-2158.bam 23500774792 BAM aligned CPTAC3 9ca33398-5326-4ee7-9909-9a76de2d2683 37f9c2c350375dea3326b87fe1cb5cf2 { 'aliquot_tag': 'ALQ_2e77f73e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04868.WGS.N.hg38 C3L-04868 LSCC WGS blood_normal CPT0253060002 391d5226-dbaa-4631-961b-cc74dfb50e18_wgs_gdc_realn.bam 69484426572 BAM harmonized CPTAC3 ddc24ca0-210e-492c-bd82-a8896da3c6a1 a24b10c816b908ae9b66b0c4af7c8754 { 'aliquot_tag': 'ALQ_2e77f73e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04868.WGS.T C3L-04868 LSCC WGS tumor CPT0252940006 CPT0252940006.WholeGenome.RP-2158.bam 23172859578 BAM aligned CPTAC3 caec68e3-a988-41fe-8dc4-05c366488121 4614ff3a75f78d1ce1fd2e2b13a2b30d { 'aliquot_tag': 'ALQ_d2a23a3b', 'gdc_sample_type': 'Primary Tumor' } @@ -16344,16 +17311,16 @@ C3L-04871.miRNA-Seq.A C3L-04871 LSCC miRNA-Seq tissue_normal CPT0269330009 20051 C3L-04871.miRNA-Seq.A.hg38 C3L-04871 LSCC miRNA-Seq tissue_normal CPT0269330009 16ed3190-9dda-495c-9a6d-dc8a828f90cc_mirnaseq_gdc_realn.bam 230850515 BAM harmonized CPTAC3 b6000134-a5e8-4077-b0ec-b1cc2873261b b123983d7b9a6d7d8ea15f392c27c4fc { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04871.miRNA-Seq.T C3L-04871 LSCC miRNA-Seq tumor CPT0269290009 200224_UNC31-K00269_0267_AHC722BBXY_CCGTCC_S16_L006_R1_001.unaln.bam 234950644 BAM unaligned CPTAC3 34936c80-5618-4d8a-90d3-9b5f7bc41058 011ad2bcce7cf2d36eb8fbd22b0c86e2 { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor' } C3L-04871.miRNA-Seq.T.hg38 C3L-04871 LSCC miRNA-Seq tumor CPT0269290009 24271d4a-6e19-46f7-8245-4d6400a9d39f_mirnaseq_gdc_realn.bam 262124518 BAM harmonized CPTAC3 04f16660-d92f-412e-8527-c062f7de85b7 8eba84ab61d26e91d518c77fd21dbe5b { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor' } -C3L-04871.RNA-Seq.chimeric.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 bf3527ed-5397-47e9-b8cc-12687dd1b57f.rna_seq.chimeric.gdc_realn.bam 93447020 BAM chimeric harmonized CPTAC3 30418e7f-9594-4044-9900-85b619f5f472 62db142c4ba46e9c346da8580b9d7bdb { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04871.RNA-Seq.chimeric.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 e588b09b-4264-4bcd-96d4-267ffb12f7e5.rna_seq.chimeric.gdc_realn.bam 67643071 BAM chimeric harmonized CPTAC3 cdc2088c-9d4f-4e26-8a70-6b2517132431 76c902be5bbcba346571d5675702f620 { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor' } -C3L-04871.RNA-Seq.genomic.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 bf3527ed-5397-47e9-b8cc-12687dd1b57f.rna_seq.genomic.gdc_realn.bam 7420798873 BAM genomic harmonized CPTAC3 189fc830-be8a-4d09-8298-48b191d615b7 f4e770755c018acd337935eb6fdcda8a { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04871.RNA-Seq.genomic.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 e588b09b-4264-4bcd-96d4-267ffb12f7e5.rna_seq.genomic.gdc_realn.bam 8331090399 BAM genomic harmonized CPTAC3 c5809ce9-aef8-413f-93fb-1edee9a07569 11dabda0ba2144c6de0f08965d2962a6 { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor' } -C3L-04871.RNA-Seq.R1_L005.A C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGTCGGA-GCTTGCGC_S19_L005_R1_001.fastq.gz 3538087308 FASTQ R1_L005 unaligned CPTAC3 b37be0c1-1600-4417-bd99-db6225ce1526 0ae263c0b027ddff20d1a343a0af83ef { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04871.RNA-Seq.R1_L008.T C3L-04871 LSCC RNA-Seq tumor CPT0269290009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CCATTCGA-GTTGTCCG_S32_L008_R1_001.fastq.gz 3857917556 FASTQ R1_L008 unaligned CPTAC3 bcc382c1-29b4-4989-918f-69976c6a71ad 584eb0bff9ea3bde553a0f5178e7b032 { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor' } -C3L-04871.RNA-Seq.R2_L005.A C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGTCGGA-GCTTGCGC_S19_L005_R2_001.fastq.gz 4032901461 FASTQ R2_L005 unaligned CPTAC3 79e8deb7-9e77-452c-93ce-558f96c4c755 57e4c7cd03a0e317df5a7a7f71edaac0 { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04871.RNA-Seq.R2_L008.T C3L-04871 LSCC RNA-Seq tumor CPT0269290009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CCATTCGA-GTTGTCCG_S32_L008_R2_001.fastq.gz 4158031134 FASTQ R2_L008 unaligned CPTAC3 04cf2d38-a9fb-413a-b32a-15cfa33a2166 e9dddea653ff233157ff187040ab7887 { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor' } -C3L-04871.RNA-Seq.transcriptome.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 bf3527ed-5397-47e9-b8cc-12687dd1b57f.rna_seq.transcriptome.gdc_realn.bam 8544468955 BAM transcriptome harmonized CPTAC3 f024d219-7dca-4ba0-84b3-7b18dc2bf85d 0acdf3e89c5e01421c066e4c9e9d7120 { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04871.RNA-Seq.transcriptome.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 e588b09b-4264-4bcd-96d4-267ffb12f7e5.rna_seq.transcriptome.gdc_realn.bam 8793207346 BAM transcriptome harmonized CPTAC3 21117021-f2c8-49d9-9124-bed92d0399cf 2fe062e7bf6a080f1ef6de73b14f6706 { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor' } +C3L-04871.RNA-Seq.chimeric.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 a98c3cb8-3898-43f9-b105-7c0f79e2eabf.rna_seq.chimeric.gdc_realn.bam 93425193 BAM chimeric harmonized CPTAC3 784ed70a-8ffd-4626-b41d-49c9bc15392c b502437dc6eda0f8802f8e6416b48dfd { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04871.RNA-Seq.chimeric.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 b6158482-8499-4d88-8266-927ba864bad1.rna_seq.chimeric.gdc_realn.bam 67663833 BAM chimeric harmonized CPTAC3 187d6264-0ad9-4c9e-b5fa-2c14e82edfe2 fa3acf0bd7e9931aa89909588330b28d { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor' } +C3L-04871.RNA-Seq.genomic.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 a98c3cb8-3898-43f9-b105-7c0f79e2eabf.rna_seq.genomic.gdc_realn.bam 7422995654 BAM genomic harmonized CPTAC3 c9eeb07d-9460-4170-b6dc-28ec26c570f2 59a075280f55cc1e14212da1b334ad80 { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04871.RNA-Seq.genomic.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 b6158482-8499-4d88-8266-927ba864bad1.rna_seq.genomic.gdc_realn.bam 8334622161 BAM genomic harmonized CPTAC3 3b75a1ff-0bde-48d9-85d3-5e4646628ea3 b51227a8b5450ad4e706abcca7a13ebe { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor' } +C3L-04871.RNA-Seq.R1_L005.A C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGTCGGA-GCTTGCGC_S19_L005_R1_001.fastq.gz 3538087308 FASTQ R1_L005 unaligned CPTAC3 b37be0c1-1600-4417-bd99-db6225ce1526 0ae263c0b027ddff20d1a343a0af83ef { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-04871.RNA-Seq.R1_L008.T C3L-04871 LSCC RNA-Seq tumor CPT0269290009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CCATTCGA-GTTGTCCG_S32_L008_R1_001.fastq.gz 3857917556 FASTQ R1_L008 unaligned CPTAC3 bcc382c1-29b4-4989-918f-69976c6a71ad 584eb0bff9ea3bde553a0f5178e7b032 { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04871.RNA-Seq.R2_L005.A C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTGTCGGA-GCTTGCGC_S19_L005_R2_001.fastq.gz 4032901461 FASTQ R2_L005 unaligned CPTAC3 79e8deb7-9e77-452c-93ce-558f96c4c755 57e4c7cd03a0e317df5a7a7f71edaac0 { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-04871.RNA-Seq.R2_L008.T C3L-04871 LSCC RNA-Seq tumor CPT0269290009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CCATTCGA-GTTGTCCG_S32_L008_R2_001.fastq.gz 4158031134 FASTQ R2_L008 unaligned CPTAC3 04cf2d38-a9fb-413a-b32a-15cfa33a2166 e9dddea653ff233157ff187040ab7887 { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04871.RNA-Seq.transcriptome.A.hg38 C3L-04871 LSCC RNA-Seq tissue_normal CPT0269330009 a98c3cb8-3898-43f9-b105-7c0f79e2eabf.rna_seq.transcriptome.gdc_realn.bam 9778559892 BAM transcriptome harmonized CPTAC3 d5c9aee3-5c4f-434b-a7dc-940267eacdbf a7e10605412c9ce6d7a56ba4f7abd9dd { 'aliquot_tag': 'ALQ_dd2e8bc5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04871.RNA-Seq.transcriptome.T.hg38 C3L-04871 LSCC RNA-Seq tumor CPT0269290009 b6158482-8499-4d88-8266-927ba864bad1.rna_seq.transcriptome.gdc_realn.bam 9819944785 BAM transcriptome harmonized CPTAC3 3368553b-296b-4ee5-aca4-5a7eb0ed4680 7a7fc62308bde3e1dd6bc93d19d57748 { 'aliquot_tag': 'ALQ_5cc240c1', 'gdc_sample_type': 'Primary Tumor' } C3L-04871.WGS.N C3L-04871 LSCC WGS blood_normal CPT0269420002 CPT0269420002.WholeGenome.RP-2158.bam 26218863830 BAM aligned CPTAC3 2045a7d4-81e4-4716-ad5f-831917e388a7 0ef8c627e8d0301044c7fac0eb346923 { 'aliquot_tag': 'ALQ_6a994b45', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04871.WGS.N.hg38 C3L-04871 LSCC WGS blood_normal CPT0269420002 a2db28ad-4a19-4289-bb64-24390da5be1e_wgs_gdc_realn.bam 78200378403 BAM harmonized CPTAC3 e78b9def-1b4a-4c79-a3bf-0408441713a6 d06ffc1eb9aebe047c60e033f3fa6784 { 'aliquot_tag': 'ALQ_6a994b45', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04871.WGS.T C3L-04871 LSCC WGS tumor CPT0269290006 CPT0269290006.WholeGenome.RP-2158.bam 28066513578 BAM aligned CPTAC3 35033de2-00a5-40ee-9d1e-032e90fe1014 e456c88ec73fa83624bc1d7e82dfe6cf { 'aliquot_tag': 'ALQ_cc7d5d50', 'gdc_sample_type': 'Primary Tumor' } @@ -16372,16 +17339,16 @@ C3L-04872.miRNA-Seq.A C3L-04872 LSCC miRNA-Seq tissue_normal CPT0268240009 20051 C3L-04872.miRNA-Seq.A.hg38 C3L-04872 LSCC miRNA-Seq tissue_normal CPT0268240009 c65cc1b1-fbd9-4ca9-82b6-ceb5e617158c_mirnaseq_gdc_realn.bam 249589107 BAM harmonized CPTAC3 313e161e-b66f-4b25-a4a4-d6fd4fb15fb8 59fcd8b260654e7027c3c45f719d950e { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04872.miRNA-Seq.T C3L-04872 LSCC miRNA-Seq tumor CPT0268190009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CACGAT_S31_L008_R1_001.unaln.bam 213095930 BAM unaligned CPTAC3 2b967150-a242-4bd8-bcbf-dde773f68376 d111fc708b724e2ebc10b8a5de7210fe { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor' } C3L-04872.miRNA-Seq.T.hg38 C3L-04872 LSCC miRNA-Seq tumor CPT0268190009 7e501903-e1f7-4199-be84-95edea9c5a57_mirnaseq_gdc_realn.bam 237597097 BAM harmonized CPTAC3 977e92f0-0ee0-4272-b2a7-b306862a4129 7b361a2438dd52e8b2fab45a192b9da2 { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor' } -C3L-04872.RNA-Seq.chimeric.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 380fd597-157c-4c49-96c4-ec6d8d9eb007.rna_seq.chimeric.gdc_realn.bam 80963489 BAM chimeric harmonized CPTAC3 0ff91d3f-f8ad-474f-8b48-a2f50d84a16d a213a4422c31ef34373968c2f0d6ed65 { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04872.RNA-Seq.chimeric.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 0ed392df-cc83-4879-911d-aa3b5f5f1541.rna_seq.chimeric.gdc_realn.bam 56924899 BAM chimeric harmonized CPTAC3 db5fe3f7-f05d-4920-88ea-60860d9649ae c795b9f894da0e362b7ac6e195a3e5e4 { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor' } -C3L-04872.RNA-Seq.genomic.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 380fd597-157c-4c49-96c4-ec6d8d9eb007.rna_seq.genomic.gdc_realn.bam 8798691210 BAM genomic harmonized CPTAC3 bf10e11d-41b2-49de-a8bc-7b5b247113a9 9af7f57b7a78a98a95f001b6ae50a4d8 { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04872.RNA-Seq.genomic.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 0ed392df-cc83-4879-911d-aa3b5f5f1541.rna_seq.genomic.gdc_realn.bam 7840860080 BAM genomic harmonized CPTAC3 6dce8d23-13fc-4a8b-b089-cdc2466edb07 3aae08fc090694171cbcbdee08eed6c0 { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor' } -C3L-04872.RNA-Seq.R1_L005.A C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACACTAAG-ATCCATAT_S17_L005_R1_001.fastq.gz 4349949102 FASTQ R1_L005 unaligned CPTAC3 8655c5ea-5ef9-42e0-bee0-9731723f1c28 b17897a7868704dabfb9af33c1d6dd2c { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04872.RNA-Seq.R1_L008.T C3L-04872 LSCC RNA-Seq tumor CPT0268190009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACAGGCGC-CTCTGCCT_S29_L008_R1_001.fastq.gz 3698420557 FASTQ R1_L008 unaligned CPTAC3 94f914c3-18e6-41d0-b4d8-35d7e99cddc9 8c15acd560b7c9773ebb3c8dcc9b1e4c { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor' } -C3L-04872.RNA-Seq.R2_L005.A C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACACTAAG-ATCCATAT_S17_L005_R2_001.fastq.gz 4947695883 FASTQ R2_L005 unaligned CPTAC3 a28cea4c-f0f3-407c-a8ed-34f29aae8a99 4126da6ba4133a155b16f5a857e8f280 { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04872.RNA-Seq.R2_L008.T C3L-04872 LSCC RNA-Seq tumor CPT0268190009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACAGGCGC-CTCTGCCT_S29_L008_R2_001.fastq.gz 4217739880 FASTQ R2_L008 unaligned CPTAC3 aca625af-fd49-4223-a531-7018beea2e58 606325e5950b21613123e0a2ca2abd97 { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor' } -C3L-04872.RNA-Seq.transcriptome.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 380fd597-157c-4c49-96c4-ec6d8d9eb007.rna_seq.transcriptome.gdc_realn.bam 10100458052 BAM transcriptome harmonized CPTAC3 925cc407-6764-49f6-b224-e0767c7be6e4 817eba1aa34814a6144245dff53b904d { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04872.RNA-Seq.transcriptome.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 0ed392df-cc83-4879-911d-aa3b5f5f1541.rna_seq.transcriptome.gdc_realn.bam 7336965614 BAM transcriptome harmonized CPTAC3 9a4340fd-012b-4d85-a8e8-f67e4657c97a 02d5e6908869da442109851db9690ac9 { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor' } +C3L-04872.RNA-Seq.chimeric.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 0cc144aa-61c6-40c9-bdb2-9d313a55fd06.rna_seq.chimeric.gdc_realn.bam 80940088 BAM chimeric harmonized CPTAC3 94138104-2844-47bb-8d5c-ee6118a9f7ef 1b4f1dc602101c063b64bf81956a9748 { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04872.RNA-Seq.chimeric.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 4f3d7ea8-cfeb-46e5-a71e-50a2e6adc576.rna_seq.chimeric.gdc_realn.bam 56909093 BAM chimeric harmonized CPTAC3 8c552d1f-e02c-4047-bde4-ceeec8c68454 4232be6f1d93870e81d191e261f7106e { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor' } +C3L-04872.RNA-Seq.genomic.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 0cc144aa-61c6-40c9-bdb2-9d313a55fd06.rna_seq.genomic.gdc_realn.bam 8800210561 BAM genomic harmonized CPTAC3 90a57f05-3d23-4987-9cbb-72c601b985dc 5ce3e5ad211c17a7dc94ce451713c610 { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04872.RNA-Seq.genomic.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 4f3d7ea8-cfeb-46e5-a71e-50a2e6adc576.rna_seq.genomic.gdc_realn.bam 7841615343 BAM genomic harmonized CPTAC3 cd7d2532-d65d-4d44-b66f-4392914bf905 a3a3af734721b8157b6cc5df7794e753 { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor' } +C3L-04872.RNA-Seq.R1_L005.A C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACACTAAG-ATCCATAT_S17_L005_R1_001.fastq.gz 4349949102 FASTQ R1_L005 unaligned CPTAC3 8655c5ea-5ef9-42e0-bee0-9731723f1c28 b17897a7868704dabfb9af33c1d6dd2c { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-04872.RNA-Seq.R1_L008.T C3L-04872 LSCC RNA-Seq tumor CPT0268190009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACAGGCGC-CTCTGCCT_S29_L008_R1_001.fastq.gz 3698420557 FASTQ R1_L008 unaligned CPTAC3 94f914c3-18e6-41d0-b4d8-35d7e99cddc9 8c15acd560b7c9773ebb3c8dcc9b1e4c { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04872.RNA-Seq.R2_L005.A C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACACTAAG-ATCCATAT_S17_L005_R2_001.fastq.gz 4947695883 FASTQ R2_L005 unaligned CPTAC3 a28cea4c-f0f3-407c-a8ed-34f29aae8a99 4126da6ba4133a155b16f5a857e8f280 { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-04872.RNA-Seq.R2_L008.T C3L-04872 LSCC RNA-Seq tumor CPT0268190009 200505_UNC31-K00269_0277_AHGFKNBBXY_ACAGGCGC-CTCTGCCT_S29_L008_R2_001.fastq.gz 4217739880 FASTQ R2_L008 unaligned CPTAC3 aca625af-fd49-4223-a531-7018beea2e58 606325e5950b21613123e0a2ca2abd97 { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04872.RNA-Seq.transcriptome.A.hg38 C3L-04872 LSCC RNA-Seq tissue_normal CPT0268240009 0cc144aa-61c6-40c9-bdb2-9d313a55fd06.rna_seq.transcriptome.gdc_realn.bam 11527771470 BAM transcriptome harmonized CPTAC3 ede1ef2a-c88b-469d-b061-5aaef5b04fc8 f4d0c6773fa6e4fb562f9158f104cf75 { 'aliquot_tag': 'ALQ_2258fc4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04872.RNA-Seq.transcriptome.T.hg38 C3L-04872 LSCC RNA-Seq tumor CPT0268190009 4f3d7ea8-cfeb-46e5-a71e-50a2e6adc576.rna_seq.transcriptome.gdc_realn.bam 8292623566 BAM transcriptome harmonized CPTAC3 6548a174-c5a2-4860-91d0-45c804a6dc2e 65b509073a8e8d57957ad04dba4e6aa9 { 'aliquot_tag': 'ALQ_7c2139db', 'gdc_sample_type': 'Primary Tumor' } C3L-04872.WGS.N C3L-04872 LSCC WGS blood_normal CPT0268330002 CPT0268330002.WholeGenome.RP-2158.bam 34651736800 BAM aligned CPTAC3 f73aff23-b6ee-462f-8f55-b95235fff974 50bb5a25030e3df47ef397d70caefbe5 { 'aliquot_tag': 'ALQ_ec8b59f9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04872.WGS.N.hg38 C3L-04872 LSCC WGS blood_normal CPT0268330002 684ec18f-3d8f-4bfd-88d9-264ebaf87fa4_wgs_gdc_realn.bam 105158711822 BAM harmonized CPTAC3 1833b881-3ebe-46be-adfe-bffa4185cddf 10625140854449396bab971776ade5e0 { 'aliquot_tag': 'ALQ_ec8b59f9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04872.WGS.T C3L-04872 LSCC WGS tumor CPT0268190006 CPT0268190006.WholeGenome.RP-2158.bam 24981323028 BAM aligned CPTAC3 4dbf0932-423f-4b0e-ad6a-0e7885f1e507 d4a679671e2a5526eb3688094fc9403f { 'aliquot_tag': 'ALQ_ec9e244a', 'gdc_sample_type': 'Primary Tumor' } @@ -16400,16 +17367,16 @@ C3L-04873.miRNA-Seq.A C3L-04873 LSCC miRNA-Seq tissue_normal CPT0267860009 20051 C3L-04873.miRNA-Seq.A.hg38 C3L-04873 LSCC miRNA-Seq tissue_normal CPT0267860009 817185b0-cd61-48f5-ba54-f3717fa884ba_mirnaseq_gdc_realn.bam 243528811 BAM harmonized CPTAC3 da53d6bc-3f59-4518-8a4b-177b0a29823c 5c75b6789e87a2be0c8b0ccf89686c59 { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04873.miRNA-Seq.T C3L-04873 LSCC miRNA-Seq tumor CPT0267850009 200224_UNC31-K00269_0267_AHC722BBXY_AGTTCC_S14_L006_R1_001.unaln.bam 199360917 BAM unaligned CPTAC3 e31a13b4-02da-42cd-880b-f4149178dc5d c481f65fae8904d031e6b531c9794824 { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor' } C3L-04873.miRNA-Seq.T.hg38 C3L-04873 LSCC miRNA-Seq tumor CPT0267850009 7a2c99b9-233b-4830-bdcd-657f3688c4d5_mirnaseq_gdc_realn.bam 224099379 BAM harmonized CPTAC3 3317d158-0494-455b-a093-71a591886ad3 16679dec31515c207e57a5e458ac198a { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor' } -C3L-04873.RNA-Seq.chimeric.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 968c8fe2-4768-41d9-848c-eb6bf9a6902c.rna_seq.chimeric.gdc_realn.bam 69979850 BAM chimeric harmonized CPTAC3 305d12aa-27be-4691-9108-de01a5492a90 e78769be878c0100b3a7b78cbc32c5d3 { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04873.RNA-Seq.chimeric.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 3cab52ac-a420-46cc-b586-edf1c9898b3e.rna_seq.chimeric.gdc_realn.bam 72474145 BAM chimeric harmonized CPTAC3 860d4841-4581-4c33-99bb-201becd2a9d3 9dbd5ded9b12162146f56b06c45b630f { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor' } -C3L-04873.RNA-Seq.genomic.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 968c8fe2-4768-41d9-848c-eb6bf9a6902c.rna_seq.genomic.gdc_realn.bam 6770000765 BAM genomic harmonized CPTAC3 ce138ee1-c1ea-4205-9ec0-e9e6a48c5afa 509fb228c4ac5c78beee6638496339a2 { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04873.RNA-Seq.genomic.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 3cab52ac-a420-46cc-b586-edf1c9898b3e.rna_seq.genomic.gdc_realn.bam 8450089216 BAM genomic harmonized CPTAC3 5bb1bcbe-bde1-47fb-a3c8-e3385e50b841 456a129166b9ba379102ba7160476cfa { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor' } -C3L-04873.RNA-Seq.R1_L004.A C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 200505_UNC31-K00269_0277_AHGFKNBBXY_TTGCCTAG-ACCACTTA_S16_L004_R1_001.fastq.gz 3267021647 FASTQ R1_L004 unaligned CPTAC3 4f261355-af5a-4fc3-845b-deee97490d06 9c998163d8b3500a9a30e9deba5f9970 { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04873.RNA-Seq.R1_L008.T C3L-04873 LSCC RNA-Seq tumor CPT0267850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGGTCA-TGTCGTAG_S30_L008_R1_001.fastq.gz 4118044352 FASTQ R1_L008 unaligned CPTAC3 20817190-6ba3-46e2-97b8-3524fb0f249d c62e59b11ec933fbab678c77f6fc7f3f { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor' } -C3L-04873.RNA-Seq.R2_L004.A C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 200505_UNC31-K00269_0277_AHGFKNBBXY_TTGCCTAG-ACCACTTA_S16_L004_R2_001.fastq.gz 3661427471 FASTQ R2_L004 unaligned CPTAC3 5bfe4050-1028-4139-9fa0-0de52e10513f 8e290353c7c553f20a3c4d1dc99d73cb { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04873.RNA-Seq.R2_L008.T C3L-04873 LSCC RNA-Seq tumor CPT0267850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGGTCA-TGTCGTAG_S30_L008_R2_001.fastq.gz 4391222005 FASTQ R2_L008 unaligned CPTAC3 a0f52148-128b-417a-bc26-eaff29f1ba80 c83c95266db04107e4e5eddf3da6bb96 { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor' } -C3L-04873.RNA-Seq.transcriptome.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 968c8fe2-4768-41d9-848c-eb6bf9a6902c.rna_seq.transcriptome.gdc_realn.bam 7161837032 BAM transcriptome harmonized CPTAC3 41adb7cf-64eb-40fb-a1ba-9f67a8523f04 b721faf9b05249abd0479ba0cd6dca7f { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04873.RNA-Seq.transcriptome.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 3cab52ac-a420-46cc-b586-edf1c9898b3e.rna_seq.transcriptome.gdc_realn.bam 9783057941 BAM transcriptome harmonized CPTAC3 baa3fb04-8fdd-49de-9b4d-b665f221fe12 0b32018375a6bee8cb90beeb938d488d { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor' } +C3L-04873.RNA-Seq.chimeric.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 a08b18ff-80c4-4e91-b8d0-763f23de6aa1.rna_seq.chimeric.gdc_realn.bam 69985959 BAM chimeric harmonized CPTAC3 8ee47747-315c-4935-8326-88a620f0cf92 29c562d33429ba2f10f1645feb9b2df4 { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04873.RNA-Seq.chimeric.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 1e2b7d6b-d269-4c31-933a-ec77b5021fc9.rna_seq.chimeric.gdc_realn.bam 72449084 BAM chimeric harmonized CPTAC3 1efd2c17-3a91-4984-9095-bdf0a3d642cb 5331e2adec7f8b5a9aac3b1abfb2abb1 { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor' } +C3L-04873.RNA-Seq.genomic.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 a08b18ff-80c4-4e91-b8d0-763f23de6aa1.rna_seq.genomic.gdc_realn.bam 6770811622 BAM genomic harmonized CPTAC3 05636841-9d01-49e4-9092-7e199296571b 0129aa987d514ed511fb7e3cc08afc8e { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04873.RNA-Seq.genomic.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 1e2b7d6b-d269-4c31-933a-ec77b5021fc9.rna_seq.genomic.gdc_realn.bam 8452007508 BAM genomic harmonized CPTAC3 3f342088-ae3a-4e5e-909a-412bba21bbab ab489d368fa80001431d33644cbf77b0 { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor' } +C3L-04873.RNA-Seq.R1_L004.A C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 200505_UNC31-K00269_0277_AHGFKNBBXY_TTGCCTAG-ACCACTTA_S16_L004_R1_001.fastq.gz 3267021647 FASTQ R1_L004 unaligned CPTAC3 4f261355-af5a-4fc3-845b-deee97490d06 9c998163d8b3500a9a30e9deba5f9970 { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-04873.RNA-Seq.R1_L008.T C3L-04873 LSCC RNA-Seq tumor CPT0267850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGGTCA-TGTCGTAG_S30_L008_R1_001.fastq.gz 4118044352 FASTQ R1_L008 unaligned CPTAC3 20817190-6ba3-46e2-97b8-3524fb0f249d c62e59b11ec933fbab678c77f6fc7f3f { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04873.RNA-Seq.R2_L004.A C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 200505_UNC31-K00269_0277_AHGFKNBBXY_TTGCCTAG-ACCACTTA_S16_L004_R2_001.fastq.gz 3661427471 FASTQ R2_L004 unaligned CPTAC3 5bfe4050-1028-4139-9fa0-0de52e10513f 8e290353c7c553f20a3c4d1dc99d73cb { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-04873.RNA-Seq.R2_L008.T C3L-04873 LSCC RNA-Seq tumor CPT0267850009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGGTCA-TGTCGTAG_S30_L008_R2_001.fastq.gz 4391222005 FASTQ R2_L008 unaligned CPTAC3 a0f52148-128b-417a-bc26-eaff29f1ba80 c83c95266db04107e4e5eddf3da6bb96 { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04873.RNA-Seq.transcriptome.A.hg38 C3L-04873 LSCC RNA-Seq tissue_normal CPT0267860009 a08b18ff-80c4-4e91-b8d0-763f23de6aa1.rna_seq.transcriptome.gdc_realn.bam 8142750344 BAM transcriptome harmonized CPTAC3 e408e527-6786-4eb0-9224-8ddec6dcc1d3 f8396a9c3a451ed751aa810be37948cb { 'aliquot_tag': 'ALQ_2f368f2b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04873.RNA-Seq.transcriptome.T.hg38 C3L-04873 LSCC RNA-Seq tumor CPT0267850009 1e2b7d6b-d269-4c31-933a-ec77b5021fc9.rna_seq.transcriptome.gdc_realn.bam 11069788448 BAM transcriptome harmonized CPTAC3 f6598c3b-c998-416f-ae22-b40c7ce88212 ddbe7d45d212129336e2e49318dbab5a { 'aliquot_tag': 'ALQ_6896f5fb', 'gdc_sample_type': 'Primary Tumor' } C3L-04873.WGS.N C3L-04873 LSCC WGS blood_normal CPT0267970002 CPT0267970002.WholeGenome.RP-2158.bam 27770798027 BAM aligned CPTAC3 6e9b251f-aac4-4ca8-8aa2-94939f3944c9 398f0810d4e79f56d90037d662c34fb3 { 'aliquot_tag': 'ALQ_4ed8acb6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04873.WGS.N.hg38 C3L-04873 LSCC WGS blood_normal CPT0267970002 82f03f91-8421-4e4c-a257-2bde3ae9ec4a_wgs_gdc_realn.bam 83761394148 BAM harmonized CPTAC3 273c5dee-0424-4279-9eb2-fdd9b5b6d9ec 92b40d5aba4838c72b3d53d81b53c809 { 'aliquot_tag': 'ALQ_4ed8acb6', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04873.WGS.T C3L-04873 LSCC WGS tumor CPT0267850006 CPT0267850006.WholeGenome.RP-2158.bam 23683876538 BAM aligned CPTAC3 2493af4b-02d6-401b-b65d-0e62639e0232 0f2f1db9acfa8bf04af271e65da06234 { 'aliquot_tag': 'ALQ_f829e86a', 'gdc_sample_type': 'Primary Tumor' } @@ -16428,16 +17395,16 @@ C3L-04874.miRNA-Seq.A C3L-04874 LSCC miRNA-Seq tissue_normal CPT0268060009 20051 C3L-04874.miRNA-Seq.A.hg38 C3L-04874 LSCC miRNA-Seq tissue_normal CPT0268060009 f4176045-f3a0-411d-b198-72175e63b5ba_mirnaseq_gdc_realn.bam 228145568 BAM harmonized CPTAC3 9b2c4a53-a17e-40cd-8c8f-750e5bd944ea 558ad09dc1760b20b187aed69511551e { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04874.miRNA-Seq.T C3L-04874 LSCC miRNA-Seq tumor CPT0268010009 200224_UNC31-K00269_0267_AHC722BBXY_ATGTCA_S15_L006_R1_001.unaln.bam 257877724 BAM unaligned CPTAC3 a18a1b5d-245e-469d-951e-65f7c1bca04d ec123fc307a7869a3e6790518e955033 { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor' } C3L-04874.miRNA-Seq.T.hg38 C3L-04874 LSCC miRNA-Seq tumor CPT0268010009 9de2d273-d6e7-47a0-a628-eb6bc9b3a2e0_mirnaseq_gdc_realn.bam 280343130 BAM harmonized CPTAC3 b978c3f3-4377-4420-ae18-cbb221ae8502 8142724d71d80f152e7e49b22899e4ac { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-04874.RNA-Seq.chimeric.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 47fd2955-d39d-44f4-a236-ccd5a9119eb7.rna_seq.chimeric.gdc_realn.bam 59212122 BAM chimeric harmonized CPTAC3 3ac90c65-14b1-4c3c-bf18-ee052b9f327f c11353ef5f08535bc3cf55903236b797 { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04874.RNA-Seq.chimeric.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 d72b97fe-c120-41da-846f-bb57a8a820f9.rna_seq.chimeric.gdc_realn.bam 72864308 BAM chimeric harmonized CPTAC3 e107604d-c89c-4845-b75a-05024661d341 7387436b23b364383707e8dec498d630 { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-04874.RNA-Seq.genomic.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 47fd2955-d39d-44f4-a236-ccd5a9119eb7.rna_seq.genomic.gdc_realn.bam 9205769714 BAM genomic harmonized CPTAC3 1e768101-a4e6-4658-8c55-14025dac137e 941e46a7800f47160c08786f5def8bc4 { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04874.RNA-Seq.genomic.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 d72b97fe-c120-41da-846f-bb57a8a820f9.rna_seq.genomic.gdc_realn.bam 7598435850 BAM genomic harmonized CPTAC3 7252eb23-1e1c-4854-99eb-241cde67be79 decdc39cd769689fceb0daee17077bb0 { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-04874.RNA-Seq.R1_L004.A C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 200505_UNC31-K00269_0277_AHGFKNBBXY_CCATTCGA-GTTGTCCG_S13_L004_R1_001.fastq.gz 4590335158 FASTQ R1_L004 unaligned CPTAC3 7742eec6-bdb8-4f41-8397-ef82eadf8e7f 1654e5b234ed531a733e6a75e8653c6e { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04874.RNA-Seq.R1_L008.T C3L-04874 LSCC RNA-Seq tumor CPT0268010009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TTGCCTAG-ACCACTTA_S31_L008_R1_001.fastq.gz 3696908014 FASTQ R1_L008 unaligned CPTAC3 88ca160f-a81f-4bef-9f80-13517f1e6b75 a8ce459b2c7aae68d8f87dc84ded8293 { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-04874.RNA-Seq.R2_L004.A C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 200505_UNC31-K00269_0277_AHGFKNBBXY_CCATTCGA-GTTGTCCG_S13_L004_R2_001.fastq.gz 5111805431 FASTQ R2_L004 unaligned CPTAC3 3747b899-498f-45a5-8c6f-684299021505 c64c58b363303c763a4ca4b4fe9d6bb4 { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04874.RNA-Seq.R2_L008.T C3L-04874 LSCC RNA-Seq tumor CPT0268010009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TTGCCTAG-ACCACTTA_S31_L008_R2_001.fastq.gz 4002016917 FASTQ R2_L008 unaligned CPTAC3 1b6e6435-3038-41a9-9faf-683d6e37dbfe c2badd236e84c6b15149af5ae0387a05 { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor' } -C3L-04874.RNA-Seq.transcriptome.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 47fd2955-d39d-44f4-a236-ccd5a9119eb7.rna_seq.transcriptome.gdc_realn.bam 10492550830 BAM transcriptome harmonized CPTAC3 64ec0f6d-84cc-448b-a2f6-0311860a20f5 eeb655091b6836586f45d0dbe286c056 { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04874.RNA-Seq.transcriptome.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 d72b97fe-c120-41da-846f-bb57a8a820f9.rna_seq.transcriptome.gdc_realn.bam 8757732292 BAM transcriptome harmonized CPTAC3 a871f986-218c-42ae-93bb-fe5f30feff80 4ba58bf0a959f10240379ff709145833 { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-04874.RNA-Seq.chimeric.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 17307305-e7c6-4080-82ca-dcb327d4faff.rna_seq.chimeric.gdc_realn.bam 59204199 BAM chimeric harmonized CPTAC3 f102d8a0-ba49-481c-af5a-231cf417aceb 902f88931d452e80b014b5701e2cc588 { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04874.RNA-Seq.chimeric.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 92765e84-7d9f-48da-85f7-30501ccffcd7.rna_seq.chimeric.gdc_realn.bam 72850474 BAM chimeric harmonized CPTAC3 0412ebac-894b-4952-b590-405ed8c3b6b5 c313932d452982a77274f399dd227b3c { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-04874.RNA-Seq.genomic.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 17307305-e7c6-4080-82ca-dcb327d4faff.rna_seq.genomic.gdc_realn.bam 9207473800 BAM genomic harmonized CPTAC3 d1765eea-b0d0-438a-92fb-0916ed616a4c 0c8cb26f34935ada85de6d1ff89d3a0e { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04874.RNA-Seq.genomic.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 92765e84-7d9f-48da-85f7-30501ccffcd7.rna_seq.genomic.gdc_realn.bam 7601625125 BAM genomic harmonized CPTAC3 6cc1f844-1abb-4bd1-b112-95d0c39a5b80 940d05920c94a4a8ee70c375f5017ec3 { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor' } +C3L-04874.RNA-Seq.R1_L004.A C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 200505_UNC31-K00269_0277_AHGFKNBBXY_CCATTCGA-GTTGTCCG_S13_L004_R1_001.fastq.gz 4590335158 FASTQ R1_L004 unaligned CPTAC3 7742eec6-bdb8-4f41-8397-ef82eadf8e7f 1654e5b234ed531a733e6a75e8653c6e { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-04874.RNA-Seq.R1_L008.T C3L-04874 LSCC RNA-Seq tumor CPT0268010009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TTGCCTAG-ACCACTTA_S31_L008_R1_001.fastq.gz 3696908014 FASTQ R1_L008 unaligned CPTAC3 88ca160f-a81f-4bef-9f80-13517f1e6b75 a8ce459b2c7aae68d8f87dc84ded8293 { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04874.RNA-Seq.R2_L004.A C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 200505_UNC31-K00269_0277_AHGFKNBBXY_CCATTCGA-GTTGTCCG_S13_L004_R2_001.fastq.gz 5111805431 FASTQ R2_L004 unaligned CPTAC3 3747b899-498f-45a5-8c6f-684299021505 c64c58b363303c763a4ca4b4fe9d6bb4 { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-04874.RNA-Seq.R2_L008.T C3L-04874 LSCC RNA-Seq tumor CPT0268010009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TTGCCTAG-ACCACTTA_S31_L008_R2_001.fastq.gz 4002016917 FASTQ R2_L008 unaligned CPTAC3 1b6e6435-3038-41a9-9faf-683d6e37dbfe c2badd236e84c6b15149af5ae0387a05 { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04874.RNA-Seq.transcriptome.A.hg38 C3L-04874 LSCC RNA-Seq tissue_normal CPT0268060009 17307305-e7c6-4080-82ca-dcb327d4faff.rna_seq.transcriptome.gdc_realn.bam 11903306791 BAM transcriptome harmonized CPTAC3 477a74c8-1e82-4bc4-8f59-8493a776423f d579bd7cf132d63dc2784546f3b771b0 { 'aliquot_tag': 'ALQ_352d7daf', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04874.RNA-Seq.transcriptome.T.hg38 C3L-04874 LSCC RNA-Seq tumor CPT0268010009 92765e84-7d9f-48da-85f7-30501ccffcd7.rna_seq.transcriptome.gdc_realn.bam 9799554602 BAM transcriptome harmonized CPTAC3 654576c8-2da6-48bd-be77-a3b69be5278d cf4eb806172172f738b7a0d4a03f21ac { 'aliquot_tag': 'ALQ_870da1bf', 'gdc_sample_type': 'Primary Tumor' } C3L-04874.WGS.N C3L-04874 LSCC WGS blood_normal CPT0268150002 CPT0268150002.WholeGenome.RP-2158.bam 26957184911 BAM aligned CPTAC3 ef812784-db07-40be-b8fa-0b8ff7d1dba9 b5a486deef8bfb32d1b10bab88a153b1 { 'aliquot_tag': 'ALQ_2e030d52', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04874.WGS.N.hg38 C3L-04874 LSCC WGS blood_normal CPT0268150002 953cc737-9263-4e67-be03-67fe6d20bb08_wgs_gdc_realn.bam 83536921005 BAM harmonized CPTAC3 a3c24b09-97d6-4f8e-a53a-08976f7312a7 c773fa2917d68b7f602b34a05be6503a { 'aliquot_tag': 'ALQ_2e030d52', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04874.WGS.T C3L-04874 LSCC WGS tumor CPT0268010006 CPT0268010006.WholeGenome.RP-2158.bam 26810039619 BAM aligned CPTAC3 cf1029b8-5e50-4b2d-98d9-33ff5d24745d 0632651113768137e8dac034e96b2300 { 'aliquot_tag': 'ALQ_17b2bc2e', 'gdc_sample_type': 'Primary Tumor' } @@ -16456,16 +17423,16 @@ C3L-04878.miRNA-Seq.A C3L-04878 LSCC miRNA-Seq tissue_normal CPT0255260009 20051 C3L-04878.miRNA-Seq.A.hg38 C3L-04878 LSCC miRNA-Seq tissue_normal CPT0255260009 f47c07e7-6d7e-4c19-90c8-802b2d92c1c8_mirnaseq_gdc_realn.bam 279595817 BAM harmonized CPTAC3 f861d1d9-e571-4661-83f3-37ff53d7c8c5 49ab6ea70304ae84e2c377574c1133b8 { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04878.miRNA-Seq.T C3L-04878 LSCC miRNA-Seq tumor CPT0255240009 200513_UNC31-K00269_0278_BHH7Y7BBXY_GGTAGC_S16_L007_R1_001.unaln.bam 203902828 BAM unaligned CPTAC3 3d90aa3c-b946-4a81-84cd-224d597c8d43 c35f4a41e708c9e80cb1ecb503bd55c2 { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor' } C3L-04878.miRNA-Seq.T.hg38 C3L-04878 LSCC miRNA-Seq tumor CPT0255240009 c9ec5f61-33a1-409a-b74b-3024265552bd_mirnaseq_gdc_realn.bam 228598500 BAM harmonized CPTAC3 e4ead1f4-50b1-4426-930b-774bb96ca2ec cd5e522c1911411cc06dfd5ab06da2f3 { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04878.RNA-Seq.chimeric.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 dfc2f4e7-07cd-4d0c-94e5-2cc7ae44c504.rna_seq.chimeric.gdc_realn.bam 89574968 BAM chimeric harmonized CPTAC3 6ae470d5-04b4-4100-8190-1c457ef62153 fbbff179053d64586903e689156c7d55 { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04878.RNA-Seq.chimeric.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 d06b40cd-e9cd-4137-a53b-2cba884a7833.rna_seq.chimeric.gdc_realn.bam 94001088 BAM chimeric harmonized CPTAC3 6867c507-8402-4c4e-8ca7-a0d3b533610d 860c2327d7f51b0c98f336bf6ad04817 { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04878.RNA-Seq.genomic.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 dfc2f4e7-07cd-4d0c-94e5-2cc7ae44c504.rna_seq.genomic.gdc_realn.bam 7557328982 BAM genomic harmonized CPTAC3 1b948940-5ce4-4175-88ef-6482af704fa7 f27848435c6ab07aceea539e9e4878bb { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04878.RNA-Seq.genomic.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 d06b40cd-e9cd-4137-a53b-2cba884a7833.rna_seq.genomic.gdc_realn.bam 9705766135 BAM genomic harmonized CPTAC3 0bff8e93-a260-4b63-ab52-0fe7e2f2b187 18dd61fa3d660d29115ee6f62f573bcf { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04878.RNA-Seq.R1_L002.A C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAACAATG-CTTCACGG_S6_L002_R1_001.fastq.gz 3590768876 FASTQ R1_L002 unaligned CPTAC3 0eae0b0a-3b86-409a-a7b4-0287abc1e9f0 5865033e8eb0918dc066a6020481d32a { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04878.RNA-Seq.R1_L006.T C3L-04878 LSCC RNA-Seq tumor CPT0255240009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTCTACAC-GCCAAGGT_S24_L006_R1_001.fastq.gz 4588674714 FASTQ R1_L006 unaligned CPTAC3 d499e349-70b5-4acb-a097-643e4ceef9c3 d328f1dcc1b51e55b33d31e82ab83dc2 { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04878.RNA-Seq.R2_L002.A C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAACAATG-CTTCACGG_S6_L002_R2_001.fastq.gz 4028352591 FASTQ R2_L002 unaligned CPTAC3 eef84db7-0743-4761-be20-4fa8736b4034 4ab20dcf74f24d8a7e02f4341667fbc2 { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04878.RNA-Seq.R2_L006.T C3L-04878 LSCC RNA-Seq tumor CPT0255240009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTCTACAC-GCCAAGGT_S24_L006_R2_001.fastq.gz 5160688434 FASTQ R2_L006 unaligned CPTAC3 61bdea9c-2adf-472d-8f95-85800d2e2ec4 44313257b91cb26a022002e4d1453d73 { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor' } -C3L-04878.RNA-Seq.transcriptome.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 dfc2f4e7-07cd-4d0c-94e5-2cc7ae44c504.rna_seq.transcriptome.gdc_realn.bam 7493727255 BAM transcriptome harmonized CPTAC3 3d52f937-12a8-4776-9658-97ee9514d621 52f7a56acda7f2f475a898c0b0952fee { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04878.RNA-Seq.transcriptome.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 d06b40cd-e9cd-4137-a53b-2cba884a7833.rna_seq.transcriptome.gdc_realn.bam 9842212101 BAM transcriptome harmonized CPTAC3 c3f37d80-ab04-46cb-997f-4087d1efc021 a908b1b0ec3531688a9b28747a9658bb { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04878.RNA-Seq.chimeric.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 5d78017e-92c5-4792-a47a-69255a9ffaf9.rna_seq.chimeric.gdc_realn.bam 89556924 BAM chimeric harmonized CPTAC3 66148929-f0e1-431c-8c49-3e559429204e e4e3d3483acb03be1df5bcb7d54d3bd6 { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04878.RNA-Seq.chimeric.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 6e655c89-85f1-4ed5-939e-e9887369a8a0.rna_seq.chimeric.gdc_realn.bam 93993238 BAM chimeric harmonized CPTAC3 f9e8d6fa-2dc1-4dfe-a272-e8ed039960cf 9767b55f69024a8c087012cbf7b03eb2 { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04878.RNA-Seq.genomic.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 5d78017e-92c5-4792-a47a-69255a9ffaf9.rna_seq.genomic.gdc_realn.bam 7558333864 BAM genomic harmonized CPTAC3 09ea9be4-2907-41fd-9bcf-4e87b81c4cbb c043b5ce98192da76d8a373e1e6fdfa5 { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04878.RNA-Seq.genomic.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 6e655c89-85f1-4ed5-939e-e9887369a8a0.rna_seq.genomic.gdc_realn.bam 9708242052 BAM genomic harmonized CPTAC3 344f6bf5-1de5-4960-b61d-f5276a6a7b4f b3a2b954909903457bd5e6c19d985edd { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor' } +C3L-04878.RNA-Seq.R1_L002.A C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAACAATG-CTTCACGG_S6_L002_R1_001.fastq.gz 3590768876 FASTQ R1_L002 unaligned CPTAC3 0eae0b0a-3b86-409a-a7b4-0287abc1e9f0 5865033e8eb0918dc066a6020481d32a { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-04878.RNA-Seq.R1_L006.T C3L-04878 LSCC RNA-Seq tumor CPT0255240009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTCTACAC-GCCAAGGT_S24_L006_R1_001.fastq.gz 4588674714 FASTQ R1_L006 unaligned CPTAC3 d499e349-70b5-4acb-a097-643e4ceef9c3 d328f1dcc1b51e55b33d31e82ab83dc2 { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-04878.RNA-Seq.R2_L002.A C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 200505_UNC31-K00269_0277_AHGFKNBBXY_CAACAATG-CTTCACGG_S6_L002_R2_001.fastq.gz 4028352591 FASTQ R2_L002 unaligned CPTAC3 eef84db7-0743-4761-be20-4fa8736b4034 4ab20dcf74f24d8a7e02f4341667fbc2 { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-04878.RNA-Seq.R2_L006.T C3L-04878 LSCC RNA-Seq tumor CPT0255240009 200505_UNC31-K00269_0277_AHGFKNBBXY_GTCTACAC-GCCAAGGT_S24_L006_R2_001.fastq.gz 5160688434 FASTQ R2_L006 unaligned CPTAC3 61bdea9c-2adf-472d-8f95-85800d2e2ec4 44313257b91cb26a022002e4d1453d73 { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-04878.RNA-Seq.transcriptome.A.hg38 C3L-04878 LSCC RNA-Seq tissue_normal CPT0255260009 5d78017e-92c5-4792-a47a-69255a9ffaf9.rna_seq.transcriptome.gdc_realn.bam 8519887327 BAM transcriptome harmonized CPTAC3 9f61a929-0f79-4add-bfbb-f13371629618 cbe70f800954e394dede22789f03a17c { 'aliquot_tag': 'ALQ_97bdba87', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04878.RNA-Seq.transcriptome.T.hg38 C3L-04878 LSCC RNA-Seq tumor CPT0255240009 6e655c89-85f1-4ed5-939e-e9887369a8a0.rna_seq.transcriptome.gdc_realn.bam 11024340555 BAM transcriptome harmonized CPTAC3 e69b6b86-7d77-404a-868e-2ef80d723623 355fe56e78a13c3dedd21843359b42d3 { 'aliquot_tag': 'ALQ_ed7de9e7', 'gdc_sample_type': 'Primary Tumor' } C3L-04878.WGS.N C3L-04878 LSCC WGS blood_normal CPT0255360002 CPT0255360002.WholeGenome.RP-2158.bam 24848420863 BAM aligned CPTAC3 7eb956f8-37a4-4f14-bf28-18d99110c807 ed4ad8bc347fe252985ebb6bad4c7dc3 { 'aliquot_tag': 'ALQ_cb33b0aa', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04878.WGS.N.hg38 C3L-04878 LSCC WGS blood_normal CPT0255360002 9a24adbe-9814-4111-ad5c-be83ee688559_wgs_gdc_realn.bam 73320254134 BAM harmonized CPTAC3 5d3c329c-f915-45fd-9d44-ab657947b05a b7f7e9a7266fc05f8bca0beed9c0715b { 'aliquot_tag': 'ALQ_cb33b0aa', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04878.WGS.T C3L-04878 LSCC WGS tumor CPT0255240006 CPT0255240006.WholeGenome.RP-2158.bam 46451037455 BAM aligned CPTAC3 a70cacfa-0661-40d9-a4fd-0d912c3355bd aa566aa80c683791e5de7984d2fa3284 { 'aliquot_tag': 'ALQ_7dc2f476', 'gdc_sample_type': 'Primary Tumor' } @@ -16484,16 +17451,16 @@ C3L-04880.miRNA-Seq.A C3L-04880 LSCC miRNA-Seq tissue_normal CPT0253480009 20051 C3L-04880.miRNA-Seq.A.hg38 C3L-04880 LSCC miRNA-Seq tissue_normal CPT0253480009 7e014f14-93d9-4274-9d22-5c402e23bd92_mirnaseq_gdc_realn.bam 268251774 BAM harmonized CPTAC3 3947aa35-001f-402c-8554-d29453f93667 daaa854a9aa7949eb853450b286d88b2 { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04880.miRNA-Seq.T C3L-04880 LSCC miRNA-Seq tumor CPT0253470009 200224_UNC31-K00269_0267_AHC722BBXY_CAACTA_S29_L007_R1_001.unaln.bam 256466083 BAM unaligned CPTAC3 5dcbcb08-9dec-46ef-a3b6-77094bfc3572 34f2e98831cd827bd67cf28286e342c0 { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor' } C3L-04880.miRNA-Seq.T.hg38 C3L-04880 LSCC miRNA-Seq tumor CPT0253470009 df476473-7d60-4a83-8152-8fac3d7c5330_mirnaseq_gdc_realn.bam 281482737 BAM harmonized CPTAC3 4ff45129-c852-48df-a2c5-aeb976e29ede 052c71bb5dd237c89fe77be53f0d8d18 { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor' } -C3L-04880.RNA-Seq.chimeric.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d4395e61-05f1-4c38-8b38-fe381a9d241d.rna_seq.chimeric.gdc_realn.bam 37024251 BAM chimeric harmonized CPTAC3 42a140a8-c14c-4af0-ae3e-4279224f7412 195c0b488bff80d1f92e9b320bba3ac2 { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04880.RNA-Seq.chimeric.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 63582541-72f1-4a30-9ce8-ea96227a412a.rna_seq.chimeric.gdc_realn.bam 27553389 BAM chimeric harmonized CPTAC3 cf23d217-e897-45ee-807a-bcbdf7386f01 843e367e541b1c9fd3bdd79284b66270 { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor' } -C3L-04880.RNA-Seq.genomic.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d4395e61-05f1-4c38-8b38-fe381a9d241d.rna_seq.genomic.gdc_realn.bam 9954027542 BAM genomic harmonized CPTAC3 800227eb-944c-4237-890b-cc6eb181d02b ad345eb2f8516f33584af671d8c5cbc8 { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04880.RNA-Seq.genomic.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 63582541-72f1-4a30-9ce8-ea96227a412a.rna_seq.genomic.gdc_realn.bam 7017168860 BAM genomic harmonized CPTAC3 6cca267a-5f2e-4f38-aba9-8aa0400ca232 fcb78c84064f6e0a3a0152339cf4f8c5 { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor' } -C3L-04880.RNA-Seq.R1_L004.T C3L-04880 LSCC RNA-Seq tumor CPT0253470009 200428_UNC31-K00269_0276_BHH5TMBBXY_CCGTGAAG-CAGTGGAT_S13_L004_R1_001.fastq.gz 3271028811 FASTQ R1_L004 unaligned CPTAC3 3e430357-3552-49c5-a783-44fe28641208 53f04777700eb070116756da3515d8ff { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor' } -C3L-04880.RNA-Seq.R1_L008.A C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTTCCAAT-AATTCTGC_S32_L008_R1_001.fastq.gz 4395587682 FASTQ R1_L008 unaligned CPTAC3 1d0e3440-e377-4cf2-b1e1-69b467e581c9 abbbfc30f4efa7cf01c3bcc7eefcc94c { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04880.RNA-Seq.R2_L004.T C3L-04880 LSCC RNA-Seq tumor CPT0253470009 200428_UNC31-K00269_0276_BHH5TMBBXY_CCGTGAAG-CAGTGGAT_S13_L004_R2_001.fastq.gz 3513897709 FASTQ R2_L004 unaligned CPTAC3 607a4186-d2e9-4176-8d0b-4aaaa6d49250 65bec1d735321a8efb0d2a24653da454 { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor' } -C3L-04880.RNA-Seq.R2_L008.A C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTTCCAAT-AATTCTGC_S32_L008_R2_001.fastq.gz 5473367389 FASTQ R2_L008 unaligned CPTAC3 a6622f25-84c9-48e2-bca1-73b5d176648d 7e4cd746a2a61c4d5ddd096c5083b058 { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04880.RNA-Seq.transcriptome.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d4395e61-05f1-4c38-8b38-fe381a9d241d.rna_seq.transcriptome.gdc_realn.bam 10233216827 BAM transcriptome harmonized CPTAC3 5e5fb175-ed9d-462d-84d3-f577932f69ed 9f00b6a15c599a647b5f2339858ffa4a { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04880.RNA-Seq.transcriptome.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 63582541-72f1-4a30-9ce8-ea96227a412a.rna_seq.transcriptome.gdc_realn.bam 7975523136 BAM transcriptome harmonized CPTAC3 4ad5a898-79b8-45d3-99b0-25d89e135cb2 d3958cea071675d1a984cc3002934481 { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor' } +C3L-04880.RNA-Seq.chimeric.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d761537b-bc18-4f66-87b2-817f6ef65bed.rna_seq.chimeric.gdc_realn.bam 37015012 BAM chimeric harmonized CPTAC3 2b5b0aca-4c9f-4ff2-97b8-e40b31e45b74 3678694b57e7e39bddb1ea39b3d3653a { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04880.RNA-Seq.chimeric.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 6b580303-6bcc-4043-9751-39b961a12b52.rna_seq.chimeric.gdc_realn.bam 27600675 BAM chimeric harmonized CPTAC3 a1342a2c-e72e-40c4-b150-21d51740ba56 bd9c9575b0b73c968ad8557f5ef9ddb1 { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor' } +C3L-04880.RNA-Seq.genomic.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d761537b-bc18-4f66-87b2-817f6ef65bed.rna_seq.genomic.gdc_realn.bam 9956156919 BAM genomic harmonized CPTAC3 e45da645-dcf2-47f0-8120-01c5c003991f 318ff976f91bab9477cab3363384f23d { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04880.RNA-Seq.genomic.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 6b580303-6bcc-4043-9751-39b961a12b52.rna_seq.genomic.gdc_realn.bam 7019605586 BAM genomic harmonized CPTAC3 a104cf86-1e1c-4168-8fc6-299953497860 d8a4ed4687845d7d111aaaee3e1711ae { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor' } +C3L-04880.RNA-Seq.R1_L004.T C3L-04880 LSCC RNA-Seq tumor CPT0253470009 200428_UNC31-K00269_0276_BHH5TMBBXY_CCGTGAAG-CAGTGGAT_S13_L004_R1_001.fastq.gz 3271028811 FASTQ R1_L004 unaligned CPTAC3 3e430357-3552-49c5-a783-44fe28641208 53f04777700eb070116756da3515d8ff { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04880.RNA-Seq.R1_L008.A C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTTCCAAT-AATTCTGC_S32_L008_R1_001.fastq.gz 4395587682 FASTQ R1_L008 unaligned CPTAC3 1d0e3440-e377-4cf2-b1e1-69b467e581c9 abbbfc30f4efa7cf01c3bcc7eefcc94c { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-04880.RNA-Seq.R2_L004.T C3L-04880 LSCC RNA-Seq tumor CPT0253470009 200428_UNC31-K00269_0276_BHH5TMBBXY_CCGTGAAG-CAGTGGAT_S13_L004_R2_001.fastq.gz 3513897709 FASTQ R2_L004 unaligned CPTAC3 607a4186-d2e9-4176-8d0b-4aaaa6d49250 65bec1d735321a8efb0d2a24653da454 { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-04880.RNA-Seq.R2_L008.A C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTTCCAAT-AATTCTGC_S32_L008_R2_001.fastq.gz 5473367389 FASTQ R2_L008 unaligned CPTAC3 a6622f25-84c9-48e2-bca1-73b5d176648d 7e4cd746a2a61c4d5ddd096c5083b058 { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-04880.RNA-Seq.transcriptome.A.hg38 C3L-04880 LSCC RNA-Seq tissue_normal CPT0253480009 d761537b-bc18-4f66-87b2-817f6ef65bed.rna_seq.transcriptome.gdc_realn.bam 11617070139 BAM transcriptome harmonized CPTAC3 9d22fba6-0241-485e-9024-56ca3622145b 9c45e49033e324a993a3facbfdc5bd2f { 'aliquot_tag': 'ALQ_9d04d2c1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04880.RNA-Seq.transcriptome.T.hg38 C3L-04880 LSCC RNA-Seq tumor CPT0253470009 6b580303-6bcc-4043-9751-39b961a12b52.rna_seq.transcriptome.gdc_realn.bam 8929528890 BAM transcriptome harmonized CPTAC3 826176a2-ca88-44a0-a803-5cde5b99fd22 432448c09f71e624daef235890f9b65b { 'aliquot_tag': 'ALQ_1f544510', 'gdc_sample_type': 'Primary Tumor' } C3L-04880.WGS.N C3L-04880 LSCC WGS blood_normal CPT0253590002 CPT0253590002.WholeGenome.RP-2158.bam 26459494415 BAM aligned CPTAC3 5da2c091-2d7e-4972-8cc7-c5eab0d39737 a84406b1c4fd86bb0be48311e6a7b972 { 'aliquot_tag': 'ALQ_fceaf15c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04880.WGS.N.hg38 C3L-04880 LSCC WGS blood_normal CPT0253590002 aedbe9f5-5a65-4d32-9583-36c12c019c25_wgs_gdc_realn.bam 77856755373 BAM harmonized CPTAC3 4b24c115-f177-402c-9301-cd422a5aad9a 531d295b1f5e8b661193257fa9810047 { 'aliquot_tag': 'ALQ_fceaf15c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04880.WGS.T C3L-04880 LSCC WGS tumor CPT0253470006 CPT0253470006.WholeGenome.RP-2158.bam 19965291697 BAM aligned CPTAC3 4c8261c7-0626-4d67-8000-c7d0b5543be0 3acb6e5cc655e78488ad9c56605322d0 { 'aliquot_tag': 'ALQ_8feb5881', 'gdc_sample_type': 'Primary Tumor' } @@ -16512,16 +17479,16 @@ C3L-04883.miRNA-Seq.A C3L-04883 LSCC miRNA-Seq tissue_normal CPT0253670009 20051 C3L-04883.miRNA-Seq.A.hg38 C3L-04883 LSCC miRNA-Seq tissue_normal CPT0253670009 4a33edd1-55fe-4e8a-b18f-ba02099714b3_mirnaseq_gdc_realn.bam 266134817 BAM harmonized CPTAC3 add655c1-aaff-4ae4-840c-d4796386d9d7 6729b1b19a8c1ce825b51affcce55424 { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04883.miRNA-Seq.T C3L-04883 LSCC miRNA-Seq tumor CPT0253630013 200325_UNC31-K00269_0272_AHHC2NBBXY_TCATTC_S21_L001_R1_001.unaln.bam 172304920 BAM unaligned CPTAC3 b83ed21b-3eca-43e1-8d17-c6ccdea6a9f1 86fb3611d3e48ce15fb1362e615cadc6 { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor' } C3L-04883.miRNA-Seq.T.hg38 C3L-04883 LSCC miRNA-Seq tumor CPT0253630013 db271d01-a7f3-4049-a2fd-0fe44a88805b_mirnaseq_gdc_realn.bam 192206320 BAM harmonized CPTAC3 67633cee-d9c9-4e01-8b5e-b286fdfaf286 afd47a782978b7fb267e7aa659f71f72 { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor' } -C3L-04883.RNA-Seq.chimeric.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 81a8e142-e6a0-47fd-8013-e032d8910d72.rna_seq.chimeric.gdc_realn.bam 26948371 BAM chimeric harmonized CPTAC3 654e985b-b3cc-4193-af72-701cf3c4fba4 eff7d1322b617234bb31400d82bdc4d7 { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04883.RNA-Seq.chimeric.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 87c0b458-f2af-41e0-9984-c187cf5786f8.rna_seq.chimeric.gdc_realn.bam 42500764 BAM chimeric harmonized CPTAC3 9ff20be6-5c1e-4e52-88b8-4be96338dc07 dabed48516f5e4e44c62ea7bb30b66df { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor' } -C3L-04883.RNA-Seq.genomic.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 81a8e142-e6a0-47fd-8013-e032d8910d72.rna_seq.genomic.gdc_realn.bam 7610500574 BAM genomic harmonized CPTAC3 e079ff37-43f9-46ab-9d6e-992e32765dde 2042958dbf5056f42af272861bfcbe2f { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04883.RNA-Seq.genomic.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 87c0b458-f2af-41e0-9984-c187cf5786f8.rna_seq.genomic.gdc_realn.bam 7662459514 BAM genomic harmonized CPTAC3 08920160-4977-436c-b2fc-aa1878536033 3cde715098ce63f68ccaa07e27b8741f { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor' } -C3L-04883.RNA-Seq.R1_L008.A C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACCTTGGC-GGCCTCAT_S29_L008_R1_001.fastq.gz 3159378545 FASTQ R1_L008 unaligned CPTAC3 ff5812ee-f6d4-40dd-8c4a-fcf956d9c9aa 9af62120288dfe5d03ec2a7fca0e963d { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04883.RNA-Seq.R1_L008.T C3L-04883 LSCC RNA-Seq tumor CPT0253630013 200428_UNC31-K00269_0275_AHGCJVBBXY_TACTCATA-CCTGTGGC_S29_L008_R1_001.fastq.gz 3733715364 FASTQ R1_L008 unaligned CPTAC3 0b7f7e47-594f-4ad3-b45f-34b2a1666fda 90b674f89607fcb0d1ef01bfe9b0a18b { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor' } -C3L-04883.RNA-Seq.R2_L008.A C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACCTTGGC-GGCCTCAT_S29_L008_R2_001.fastq.gz 4047572137 FASTQ R2_L008 unaligned CPTAC3 078f549a-e1ee-482c-bf00-eb731eb4f8d1 d546f6243031eca29403fb1f7cd581c5 { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04883.RNA-Seq.R2_L008.T C3L-04883 LSCC RNA-Seq tumor CPT0253630013 200428_UNC31-K00269_0275_AHGCJVBBXY_TACTCATA-CCTGTGGC_S29_L008_R2_001.fastq.gz 3864111802 FASTQ R2_L008 unaligned CPTAC3 1bce6eab-a43b-422e-bc9a-4e6a7f4053c5 1d41b6bcfadc1abce51f3bbf5a9fb473 { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor' } -C3L-04883.RNA-Seq.transcriptome.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 81a8e142-e6a0-47fd-8013-e032d8910d72.rna_seq.transcriptome.gdc_realn.bam 7244199476 BAM transcriptome harmonized CPTAC3 70813e65-4f62-43f3-83db-4b8804757a3a d0a941d2dbe26b9698295139fc2dd370 { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04883.RNA-Seq.transcriptome.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 87c0b458-f2af-41e0-9984-c187cf5786f8.rna_seq.transcriptome.gdc_realn.bam 11167254068 BAM transcriptome harmonized CPTAC3 471d9a4b-ef33-4c7b-a4bc-a52daff8d053 b16a44ecf22468c08a481768525b7992 { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor' } +C3L-04883.RNA-Seq.chimeric.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 4c74bb2b-5072-4e30-9066-760c62b1f467.rna_seq.chimeric.gdc_realn.bam 26940528 BAM chimeric harmonized CPTAC3 6ad93264-73ed-49af-9fd3-17c0fc7ad9d0 d484a395db323524f162e16bac32a28f { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04883.RNA-Seq.chimeric.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 503b59ad-2db9-4088-bfb7-8ef6c57af4aa.rna_seq.chimeric.gdc_realn.bam 42485720 BAM chimeric harmonized CPTAC3 4d5a5ea1-2440-4c2b-8261-9ef47ee72392 ba6a8d3a7497a7d7c14095230ae40143 { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor' } +C3L-04883.RNA-Seq.genomic.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 4c74bb2b-5072-4e30-9066-760c62b1f467.rna_seq.genomic.gdc_realn.bam 7613280714 BAM genomic harmonized CPTAC3 513c3e6c-3f0e-4e96-85fd-62cdb3a224d9 e34a2e9591d4879a95e2999a38571bd9 { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04883.RNA-Seq.genomic.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 503b59ad-2db9-4088-bfb7-8ef6c57af4aa.rna_seq.genomic.gdc_realn.bam 7665470410 BAM genomic harmonized CPTAC3 a3f69762-e36d-4c7a-8f73-f6ff06c15438 def11abbdbac17688a7d0d3b893ce30e { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor' } +C3L-04883.RNA-Seq.R1_L008.A C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACCTTGGC-GGCCTCAT_S29_L008_R1_001.fastq.gz 3159378545 FASTQ R1_L008 unaligned CPTAC3 ff5812ee-f6d4-40dd-8c4a-fcf956d9c9aa 9af62120288dfe5d03ec2a7fca0e963d { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-04883.RNA-Seq.R1_L008.T C3L-04883 LSCC RNA-Seq tumor CPT0253630013 200428_UNC31-K00269_0275_AHGCJVBBXY_TACTCATA-CCTGTGGC_S29_L008_R1_001.fastq.gz 3733715364 FASTQ R1_L008 unaligned CPTAC3 0b7f7e47-594f-4ad3-b45f-34b2a1666fda 90b674f89607fcb0d1ef01bfe9b0a18b { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04883.RNA-Seq.R2_L008.A C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACCTTGGC-GGCCTCAT_S29_L008_R2_001.fastq.gz 4047572137 FASTQ R2_L008 unaligned CPTAC3 078f549a-e1ee-482c-bf00-eb731eb4f8d1 d546f6243031eca29403fb1f7cd581c5 { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-04883.RNA-Seq.R2_L008.T C3L-04883 LSCC RNA-Seq tumor CPT0253630013 200428_UNC31-K00269_0275_AHGCJVBBXY_TACTCATA-CCTGTGGC_S29_L008_R2_001.fastq.gz 3864111802 FASTQ R2_L008 unaligned CPTAC3 1bce6eab-a43b-422e-bc9a-4e6a7f4053c5 1d41b6bcfadc1abce51f3bbf5a9fb473 { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04883.RNA-Seq.transcriptome.A.hg38 C3L-04883 LSCC RNA-Seq tissue_normal CPT0253670009 4c74bb2b-5072-4e30-9066-760c62b1f467.rna_seq.transcriptome.gdc_realn.bam 8082377679 BAM transcriptome harmonized CPTAC3 47281401-ae49-40a3-8196-ef4015cd85e3 16b445177a7a83490d870a9daf93c3b1 { 'aliquot_tag': 'ALQ_529ce41b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04883.RNA-Seq.transcriptome.T.hg38 C3L-04883 LSCC RNA-Seq tumor CPT0253630013 503b59ad-2db9-4088-bfb7-8ef6c57af4aa.rna_seq.transcriptome.gdc_realn.bam 12411814660 BAM transcriptome harmonized CPTAC3 3c6615a5-6d09-4809-ad38-187590021bd9 074f452785b0e0936448320c61994b79 { 'aliquot_tag': 'ALQ_5ed29a84', 'gdc_sample_type': 'Primary Tumor' } C3L-04883.WGS.N C3L-04883 LSCC WGS blood_normal CPT0253770002 CPT0253770002.WholeGenome.RP-2158.bam 24553953880 BAM aligned CPTAC3 d27a522f-e9ea-4d98-a28f-05c27cf76020 106ef1d2ba431041ce861679d574d940 { 'aliquot_tag': 'ALQ_e12ee36', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04883.WGS.N.hg38 C3L-04883 LSCC WGS blood_normal CPT0253770002 a759674b-f5b7-4d18-8019-f1538c01206c_wgs_gdc_realn.bam 74370034798 BAM harmonized CPTAC3 8edd72ad-d390-4eac-b045-89c157968bcb f1e7042d40d03a56f0512804c5c0c9f1 { 'aliquot_tag': 'ALQ_e12ee36', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04883.WGS.T C3L-04883 LSCC WGS tumor CPT0253630006 CPT0253630006.WholeGenome.RP-2158.bam 28765276823 BAM aligned CPTAC3 650e265a-f988-4c91-9451-0a506cd46f38 f196479dc87fc1b31a211195d9608865 { 'aliquot_tag': 'ALQ_37a35f4a', 'gdc_sample_type': 'Primary Tumor' } @@ -16540,16 +17507,16 @@ C3L-04887.miRNA-Seq.A C3L-04887 LSCC miRNA-Seq tissue_normal CPT0253320009 20051 C3L-04887.miRNA-Seq.A.hg38 C3L-04887 LSCC miRNA-Seq tissue_normal CPT0253320009 d02e77f5-301c-4032-92fc-6778d3683710_mirnaseq_gdc_realn.bam 230248996 BAM harmonized CPTAC3 1746d937-9061-40c6-a928-2c785267a898 790e76cb186ffd6f499dc74e96c24cb8 { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04887.miRNA-Seq.T C3L-04887 LSCC miRNA-Seq tumor CPT0253280009 200224_UNC31-K00269_0267_AHC722BBXY_CAAAAG_S28_L007_R1_001.unaln.bam 188271545 BAM unaligned CPTAC3 bba25f7f-a651-49d6-b7f4-4d4d492cf913 772a8cb65e580b4012bb0f7fe926d75a { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor' } C3L-04887.miRNA-Seq.T.hg38 C3L-04887 LSCC miRNA-Seq tumor CPT0253280009 208a85fa-664e-44a2-94d5-633762f24e91_mirnaseq_gdc_realn.bam 209568619 BAM harmonized CPTAC3 739a985e-b451-4803-b9dd-685b85b1688f 24b526083adbdec4d6a497cfe5296cce { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-04887.RNA-Seq.chimeric.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 cc0a235c-7fd5-4cc8-a810-85e18329cad0.rna_seq.chimeric.gdc_realn.bam 32037583 BAM chimeric harmonized CPTAC3 a8ee2065-09cc-47f6-8d18-f115a64fdc82 3810f8c4321718338586b09ee771d897 { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04887.RNA-Seq.chimeric.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 c3fa4b78-ba9e-472b-b5d2-c9b67c4bc8e1.rna_seq.chimeric.gdc_realn.bam 31550642 BAM chimeric harmonized CPTAC3 3e8db202-b2f8-4bfc-8d2a-f3d28a24cbb4 43f8e0f906bf8135f493f256c4780735 { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-04887.RNA-Seq.genomic.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 cc0a235c-7fd5-4cc8-a810-85e18329cad0.rna_seq.genomic.gdc_realn.bam 8517153971 BAM genomic harmonized CPTAC3 4459971e-f0e6-4d9a-881f-e562ff117637 3a16055b8326980ecd0c04080f380ff0 { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04887.RNA-Seq.genomic.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 c3fa4b78-ba9e-472b-b5d2-c9b67c4bc8e1.rna_seq.genomic.gdc_realn.bam 7422002417 BAM genomic harmonized CPTAC3 24dadf2b-cbfe-4495-8a87-73123fe661ce 48d24a33e3ce691f22d4acd2e60b2d20 { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-04887.RNA-Seq.R1_L003.T C3L-04887 LSCC RNA-Seq tumor CPT0253280009 200428_UNC31-K00269_0276_BHH5TMBBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 3678355601 FASTQ R1_L003 unaligned CPTAC3 c6488efc-f8d4-4787-a5fe-b1d9826b2f1a 2f14616893c8c6fd4da26d599e5c7284 { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-04887.RNA-Seq.R1_L008.A C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAATGCA-GGAACGTT_S31_L008_R1_001.fastq.gz 3774059091 FASTQ R1_L008 unaligned CPTAC3 7f9d157c-47cc-484c-b95d-106872361319 be4a0d2e016cd9eb8f77c8338be80302 { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04887.RNA-Seq.R2_L003.T C3L-04887 LSCC RNA-Seq tumor CPT0253280009 200428_UNC31-K00269_0276_BHH5TMBBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 4010827900 FASTQ R2_L003 unaligned CPTAC3 db24531a-a3b5-40f3-938c-17292be8b1e1 2008ed4cb073c17beaf231cbd0b3f601 { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor' } -C3L-04887.RNA-Seq.R2_L008.A C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAATGCA-GGAACGTT_S31_L008_R2_001.fastq.gz 4691084386 FASTQ R2_L008 unaligned CPTAC3 1fd26213-56e3-4a31-80bb-1a34a7f104f1 920ef785ccfa599db5aeef6511a5561b { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04887.RNA-Seq.transcriptome.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 cc0a235c-7fd5-4cc8-a810-85e18329cad0.rna_seq.transcriptome.gdc_realn.bam 8380465319 BAM transcriptome harmonized CPTAC3 2e548a6b-67c5-4f5e-b63e-99fb05a085a0 ec3cc9798c462720f8c968a822b97b03 { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04887.RNA-Seq.transcriptome.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 c3fa4b78-ba9e-472b-b5d2-c9b67c4bc8e1.rna_seq.transcriptome.gdc_realn.bam 10765940389 BAM transcriptome harmonized CPTAC3 10c0d8df-4365-4c32-abf3-bdd1ca297480 5deb85ad3266153ba484d825acd00fe8 { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor' } +C3L-04887.RNA-Seq.chimeric.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 85a5677a-b2bc-412c-86f6-9ca6b668832e.rna_seq.chimeric.gdc_realn.bam 32017752 BAM chimeric harmonized CPTAC3 18386b51-8bde-4eab-9ad2-2843f9aa47a7 2927b5715ea3e04660ddedac28b794e0 { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04887.RNA-Seq.chimeric.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 871e4568-acb5-4ee2-a767-64c3b3517a8f.rna_seq.chimeric.gdc_realn.bam 31520150 BAM chimeric harmonized CPTAC3 e173fc59-b7fc-48ee-8266-30c508f277cc f9a6018df217be1dc14fb3f406932f45 { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor' } +C3L-04887.RNA-Seq.genomic.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 85a5677a-b2bc-412c-86f6-9ca6b668832e.rna_seq.genomic.gdc_realn.bam 8517996553 BAM genomic harmonized CPTAC3 4e560c95-d6ad-432f-a196-fea9be48e47e 1bbc18b9cbb2d2a521732ed96d57f5d4 { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04887.RNA-Seq.genomic.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 871e4568-acb5-4ee2-a767-64c3b3517a8f.rna_seq.genomic.gdc_realn.bam 7422779741 BAM genomic harmonized CPTAC3 bdc4b61c-3292-4be1-a799-4579b77a1157 79cee1a4ebd37637dd13c5582a4eabbc { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor' } +C3L-04887.RNA-Seq.R1_L003.T C3L-04887 LSCC RNA-Seq tumor CPT0253280009 200428_UNC31-K00269_0276_BHH5TMBBXY_TCCAACGC-TTGGACTT_S12_L003_R1_001.fastq.gz 3678355601 FASTQ R1_L003 unaligned CPTAC3 c6488efc-f8d4-4787-a5fe-b1d9826b2f1a 2f14616893c8c6fd4da26d599e5c7284 { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-04887.RNA-Seq.R1_L008.A C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAATGCA-GGAACGTT_S31_L008_R1_001.fastq.gz 3774059091 FASTQ R1_L008 unaligned CPTAC3 7f9d157c-47cc-484c-b95d-106872361319 be4a0d2e016cd9eb8f77c8338be80302 { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-04887.RNA-Seq.R2_L003.T C3L-04887 LSCC RNA-Seq tumor CPT0253280009 200428_UNC31-K00269_0276_BHH5TMBBXY_TCCAACGC-TTGGACTT_S12_L003_R2_001.fastq.gz 4010827900 FASTQ R2_L003 unaligned CPTAC3 db24531a-a3b5-40f3-938c-17292be8b1e1 2008ed4cb073c17beaf231cbd0b3f601 { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-04887.RNA-Seq.R2_L008.A C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAATGCA-GGAACGTT_S31_L008_R2_001.fastq.gz 4691084386 FASTQ R2_L008 unaligned CPTAC3 1fd26213-56e3-4a31-80bb-1a34a7f104f1 920ef785ccfa599db5aeef6511a5561b { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-04887.RNA-Seq.transcriptome.A.hg38 C3L-04887 LSCC RNA-Seq tissue_normal CPT0253320009 85a5677a-b2bc-412c-86f6-9ca6b668832e.rna_seq.transcriptome.gdc_realn.bam 9519585111 BAM transcriptome harmonized CPTAC3 23c3989c-fc41-49d6-9c87-6a0a4e495e06 ff55e486461058485de857b5951074fe { 'aliquot_tag': 'ALQ_cab1fad8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04887.RNA-Seq.transcriptome.T.hg38 C3L-04887 LSCC RNA-Seq tumor CPT0253280009 871e4568-acb5-4ee2-a767-64c3b3517a8f.rna_seq.transcriptome.gdc_realn.bam 12176394958 BAM transcriptome harmonized CPTAC3 892c38c8-b8c5-4a33-ac65-77b8dfbc3007 a428ab9a8ababf9e927e45ab4c08774f { 'aliquot_tag': 'ALQ_4b5d31dc', 'gdc_sample_type': 'Primary Tumor' } C3L-04887.WGS.N C3L-04887 LSCC WGS blood_normal CPT0253410002 CPT0253410002.WholeGenome.RP-2158.bam 29189595327 BAM aligned CPTAC3 a37e2e04-cd19-4797-80c2-28747f6e75a9 758ad934eaef03266808ff39e3d4b564 { 'aliquot_tag': 'ALQ_7c66938', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04887.WGS.N C3L-04887 LSCC WGS blood_normal CPT0253410002 CPT0253410002.WholeGenome.RP-2158.bam 29241738931 BAM aligned CPTAC3 1aab6bdf-e132-429f-9e7a-f865c216a0c2 ba325d3e9c7f90281ab83aa481a82cbe { 'aliquot_tag': 'ALQ_7c66938', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04887.WGS.N.hg38 C3L-04887 LSCC WGS blood_normal CPT0253410002 5cffaff7-c587-4952-84c9-a4f0b8fe5baf_wgs_gdc_realn.bam 88101377215 BAM harmonized CPTAC3 e49949ea-616f-43c1-9c7b-977d869cad50 edd5dea05056d1a5f2e208c5c393a389 { 'aliquot_tag': 'ALQ_7c66938', 'gdc_sample_type': 'Blood Derived Normal' } @@ -16569,16 +17536,16 @@ C3L-04888.miRNA-Seq.A C3L-04888 LSCC miRNA-Seq tissue_normal CPT0254220009 20051 C3L-04888.miRNA-Seq.A.hg38 C3L-04888 LSCC miRNA-Seq tissue_normal CPT0254220009 88c8a8b1-5992-44a9-8a62-a76411009b8b_mirnaseq_gdc_realn.bam 257125033 BAM harmonized CPTAC3 3f4f6029-2018-43bb-bc0e-6b487cd67e47 4c14b673fc6f1990953110a883e1c646 { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04888.miRNA-Seq.T C3L-04888 LSCC miRNA-Seq tumor CPT0254190009 200224_UNC31-K00269_0267_AHC722BBXY_CACTCA_S32_L007_R1_001.unaln.bam 234244879 BAM unaligned CPTAC3 570c32ee-f2e3-4756-92f7-2f3d61086880 35b5a5eca14b69f887c26fb04975c354 { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor' } C3L-04888.miRNA-Seq.T.hg38 C3L-04888 LSCC miRNA-Seq tumor CPT0254190009 a24146c7-9a8c-4ef6-b344-9412cdb61cc7_mirnaseq_gdc_realn.bam 262392851 BAM harmonized CPTAC3 ad3dda41-6bbf-4ee6-b407-d2dc926ec6af 158b221b19cbc688f26d75daf3312041 { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04888.RNA-Seq.chimeric.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 32c68088-ab7b-4190-b16b-b4812f6460e5.rna_seq.chimeric.gdc_realn.bam 91095975 BAM chimeric harmonized CPTAC3 806f5a26-a77c-4be6-bbb6-50d31eed1971 1b855af3842bee0fce8140e23041da4b { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04888.RNA-Seq.chimeric.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 de1cf95f-d824-4b65-b77a-39bcfc4d0658.rna_seq.chimeric.gdc_realn.bam 44759306 BAM chimeric harmonized CPTAC3 f7bd9bd3-4534-4f7f-b97f-89e28c3cc77e c6140ff7193e94b87c084cae677b978d { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04888.RNA-Seq.genomic.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 32c68088-ab7b-4190-b16b-b4812f6460e5.rna_seq.genomic.gdc_realn.bam 7798109136 BAM genomic harmonized CPTAC3 ad4ac13d-54a8-4639-9e4f-8478f253e83a 5160e417b747cf7bae319c984024ed06 { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04888.RNA-Seq.genomic.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 de1cf95f-d824-4b65-b77a-39bcfc4d0658.rna_seq.genomic.gdc_realn.bam 9522124296 BAM genomic harmonized CPTAC3 18e06f7f-ad40-4acb-9f49-edafb24c2202 d4c57174ddad947b3cbee14cf7a36c70 { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04888.RNA-Seq.R1_L001.A C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 200505_UNC31-K00269_0277_AHGFKNBBXY_AACAGGTT-ATACCAAG_S1_L001_R1_001.fastq.gz 3746396808 FASTQ R1_L001 unaligned CPTAC3 2ee25616-d457-4e76-bebe-3a10ff073b3d 48ce7160ab4d2017ccbb0b04d39f3b15 { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04888.RNA-Seq.R1_L004.T C3L-04888 LSCC RNA-Seq tumor CPT0254190009 200428_UNC31-K00269_0276_BHH5TMBBXY_AATGCCTC-TCGATCCA_S16_L004_R1_001.fastq.gz 4704855751 FASTQ R1_L004 unaligned CPTAC3 29bd9170-cb70-4973-8fbb-7d1ee12d86d2 1cf04d2df19bff694780ba35aeb089b4 { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04888.RNA-Seq.R2_L001.A C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 200505_UNC31-K00269_0277_AHGFKNBBXY_AACAGGTT-ATACCAAG_S1_L001_R2_001.fastq.gz 4180707908 FASTQ R2_L001 unaligned CPTAC3 eeafd62f-8a54-4036-a906-1de79beffa90 6e59ec4a324e4cefb822479bcb43fbdc { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04888.RNA-Seq.R2_L004.T C3L-04888 LSCC RNA-Seq tumor CPT0254190009 200428_UNC31-K00269_0276_BHH5TMBBXY_AATGCCTC-TCGATCCA_S16_L004_R2_001.fastq.gz 5039303678 FASTQ R2_L004 unaligned CPTAC3 1eab0026-17bc-4e7a-9184-3e0612798272 e027ca8f5298a7bd9cd1ed669230cee9 { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor' } -C3L-04888.RNA-Seq.transcriptome.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 32c68088-ab7b-4190-b16b-b4812f6460e5.rna_seq.transcriptome.gdc_realn.bam 8289058586 BAM transcriptome harmonized CPTAC3 1b586910-ccf0-48cc-ba14-3d740d5a2c82 1877f2494e65acff4b14945d722b46bb { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04888.RNA-Seq.transcriptome.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 de1cf95f-d824-4b65-b77a-39bcfc4d0658.rna_seq.transcriptome.gdc_realn.bam 11372268396 BAM transcriptome harmonized CPTAC3 b0bb1356-c28e-495f-9be3-fcdc4d948d09 d58c6acaf0316afb63432aeed774556a { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04888.RNA-Seq.chimeric.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 5718f7af-e939-417c-98dd-f73e4faa5e52.rna_seq.chimeric.gdc_realn.bam 91067359 BAM chimeric harmonized CPTAC3 49e960f7-471a-4305-af97-8c25a19b7de3 a3446c2b3292023d493562fb005456f4 { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04888.RNA-Seq.chimeric.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 6408d44e-c888-4bb6-9baf-cad62fd35dc6.rna_seq.chimeric.gdc_realn.bam 44760746 BAM chimeric harmonized CPTAC3 d06fb238-00a8-4b29-a28c-19771af669a1 459f8967dec16460b849234374615a29 { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04888.RNA-Seq.genomic.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 5718f7af-e939-417c-98dd-f73e4faa5e52.rna_seq.genomic.gdc_realn.bam 7798814943 BAM genomic harmonized CPTAC3 6af86fbe-58df-40af-bb3e-c1e3d8f7df1f 32d987e325abeeec4c00f5420918b0d1 { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04888.RNA-Seq.genomic.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 6408d44e-c888-4bb6-9baf-cad62fd35dc6.rna_seq.genomic.gdc_realn.bam 9523907482 BAM genomic harmonized CPTAC3 e911331c-8a58-4439-827e-f1b6389a1b62 9dc36263dfffc15c1027272f6806d9e6 { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor' } +C3L-04888.RNA-Seq.R1_L001.A C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 200505_UNC31-K00269_0277_AHGFKNBBXY_AACAGGTT-ATACCAAG_S1_L001_R1_001.fastq.gz 3746396808 FASTQ R1_L001 unaligned CPTAC3 2ee25616-d457-4e76-bebe-3a10ff073b3d 48ce7160ab4d2017ccbb0b04d39f3b15 { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-04888.RNA-Seq.R1_L004.T C3L-04888 LSCC RNA-Seq tumor CPT0254190009 200428_UNC31-K00269_0276_BHH5TMBBXY_AATGCCTC-TCGATCCA_S16_L004_R1_001.fastq.gz 4704855751 FASTQ R1_L004 unaligned CPTAC3 29bd9170-cb70-4973-8fbb-7d1ee12d86d2 1cf04d2df19bff694780ba35aeb089b4 { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04888.RNA-Seq.R2_L001.A C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 200505_UNC31-K00269_0277_AHGFKNBBXY_AACAGGTT-ATACCAAG_S1_L001_R2_001.fastq.gz 4180707908 FASTQ R2_L001 unaligned CPTAC3 eeafd62f-8a54-4036-a906-1de79beffa90 6e59ec4a324e4cefb822479bcb43fbdc { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-04888.RNA-Seq.R2_L004.T C3L-04888 LSCC RNA-Seq tumor CPT0254190009 200428_UNC31-K00269_0276_BHH5TMBBXY_AATGCCTC-TCGATCCA_S16_L004_R2_001.fastq.gz 5039303678 FASTQ R2_L004 unaligned CPTAC3 1eab0026-17bc-4e7a-9184-3e0612798272 e027ca8f5298a7bd9cd1ed669230cee9 { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-04888.RNA-Seq.transcriptome.A.hg38 C3L-04888 LSCC RNA-Seq tissue_normal CPT0254220009 5718f7af-e939-417c-98dd-f73e4faa5e52.rna_seq.transcriptome.gdc_realn.bam 9440645552 BAM transcriptome harmonized CPTAC3 1365c20b-2700-434d-90be-048eb1dd07a6 ff1da17b48b9168e19040fb58137b3e0 { 'aliquot_tag': 'ALQ_c44a17f3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04888.RNA-Seq.transcriptome.T.hg38 C3L-04888 LSCC RNA-Seq tumor CPT0254190009 6408d44e-c888-4bb6-9baf-cad62fd35dc6.rna_seq.transcriptome.gdc_realn.bam 12801374329 BAM transcriptome harmonized CPTAC3 45410c10-bbef-4661-ad1b-3885f6e92943 5c0dbd9b50b2c525b80eaebdf248f561 { 'aliquot_tag': 'ALQ_350e544c', 'gdc_sample_type': 'Primary Tumor' } C3L-04888.WGS.N C3L-04888 LSCC WGS blood_normal CPT0254310002 CPT0254310002.WholeGenome.RP-2158.bam 26253581394 BAM aligned CPTAC3 b2d8010e-d8a8-48b6-b4f8-dcdc18c41399 51e2b17ee89ed023b1561fc33de59049 { 'aliquot_tag': 'ALQ_df64670e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04888.WGS.N.hg38 C3L-04888 LSCC WGS blood_normal CPT0254310002 4fb6deda-0533-4e32-9ccb-5e10d36c9ff1_wgs_gdc_realn.bam 76922524747 BAM harmonized CPTAC3 fc9b8c98-999c-4644-8658-7bb34c36513b cd63a1968b9e8e64f9d42c55ce6d2fa5 { 'aliquot_tag': 'ALQ_df64670e', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04888.WGS.T C3L-04888 LSCC WGS tumor CPT0254190006 CPT0254190006.WholeGenome.RP-2158.bam 30154002169 BAM aligned CPTAC3 50b292ad-31dd-4f70-9efb-05aa968e64dd 61cb9a0ed180463e48811a212e76dc91 { 'aliquot_tag': 'ALQ_a5b149dd', 'gdc_sample_type': 'Primary Tumor' } @@ -16597,16 +17564,16 @@ C3L-04889.miRNA-Seq.A C3L-04889 LSCC miRNA-Seq tissue_normal CPT0267700009 20051 C3L-04889.miRNA-Seq.A.hg38 C3L-04889 LSCC miRNA-Seq tissue_normal CPT0267700009 2083e07b-b411-4988-aabd-02d3ff33631a_mirnaseq_gdc_realn.bam 228887025 BAM harmonized CPTAC3 3886a057-c679-40f2-8535-f72fc45dd419 22bef25d33af31745008d5c2cf23348d { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04889.miRNA-Seq.T C3L-04889 LSCC miRNA-Seq tumor CPT0267670009 200224_UNC31-K00269_0267_AHC722BBXY_AGTCAA_S13_L006_R1_001.unaln.bam 227953235 BAM unaligned CPTAC3 2262edab-3d16-4cd8-8013-c39abe882f2d b681cef1e992b8eb1a67f657757304ac { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor' } C3L-04889.miRNA-Seq.T.hg38 C3L-04889 LSCC miRNA-Seq tumor CPT0267670009 eaf92313-9abf-46b5-bfda-6f1ca9a90a03_mirnaseq_gdc_realn.bam 248714832 BAM harmonized CPTAC3 2324052c-da43-4128-b89f-c5baa3b405f5 8be2a59dff8dd6590f70c01936fe71e8 { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor' } -C3L-04889.RNA-Seq.chimeric.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 9cdc61a4-13be-4463-b83f-d067ac7f89a1.rna_seq.chimeric.gdc_realn.bam 82924370 BAM chimeric harmonized CPTAC3 86b8b48d-a12b-4107-9dc1-68987212739d 2922d5672342404cc7cad6eb89c72397 { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04889.RNA-Seq.chimeric.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 b8c0bc63-2cb8-496f-a7dc-e8d6c065f5bf.rna_seq.chimeric.gdc_realn.bam 42893714 BAM chimeric harmonized CPTAC3 eb425b70-fd87-4d77-8819-3dbb0d00ad20 b7b4a617e20042397de616cb7f3cc7f4 { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor' } -C3L-04889.RNA-Seq.genomic.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 9cdc61a4-13be-4463-b83f-d067ac7f89a1.rna_seq.genomic.gdc_realn.bam 8069941040 BAM genomic harmonized CPTAC3 eefd5840-b653-4463-b533-f9b37d5e4df2 b9f689be6db5231d7d6a66c61d8fa56b { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04889.RNA-Seq.genomic.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 b8c0bc63-2cb8-496f-a7dc-e8d6c065f5bf.rna_seq.genomic.gdc_realn.bam 8224706410 BAM genomic harmonized CPTAC3 63e2d5df-727a-4ca9-a1b5-3b86a5560831 e3fbd7340ffaff914b022bdcae1cd5da { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor' } -C3L-04889.RNA-Seq.R1_L004.A C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 200505_UNC31-K00269_0277_AHGFKNBBXY_TAAGGTCA-TGTCGTAG_S15_L004_R1_001.fastq.gz 4003967585 FASTQ R1_L004 unaligned CPTAC3 118ec532-9720-42b4-8294-d45af9626739 701cc2f7d5c5c4cf6ab5947e00827553 { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04889.RNA-Seq.R1_L008.T C3L-04889 LSCC RNA-Seq tumor CPT0267670009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGAACTG-CACTACGA_S29_L008_R1_001.fastq.gz 3797742630 FASTQ R1_L008 unaligned CPTAC3 c87b369f-d2b6-46f4-bcca-290a7a5b8b08 6e13a5627d3879d56f35feb90380f796 { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor' } -C3L-04889.RNA-Seq.R2_L004.A C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 200505_UNC31-K00269_0277_AHGFKNBBXY_TAAGGTCA-TGTCGTAG_S15_L004_R2_001.fastq.gz 4410790939 FASTQ R2_L004 unaligned CPTAC3 729a5650-c170-412b-ab2f-8e93883b4eae c09143b47acef6eac82076b1600add9f { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04889.RNA-Seq.R2_L008.T C3L-04889 LSCC RNA-Seq tumor CPT0267670009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGAACTG-CACTACGA_S29_L008_R2_001.fastq.gz 4104660907 FASTQ R2_L008 unaligned CPTAC3 324c04ab-2b75-4417-90c8-01debcd8df70 08f0a866d88b54eebdd7ae0a6e63addb { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor' } -C3L-04889.RNA-Seq.transcriptome.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 9cdc61a4-13be-4463-b83f-d067ac7f89a1.rna_seq.transcriptome.gdc_realn.bam 8616624524 BAM transcriptome harmonized CPTAC3 17e9e948-15b9-42d9-8f80-4b5f4167841f a1bcdaac86aed836f8a1c5b00b2dd95e { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04889.RNA-Seq.transcriptome.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 b8c0bc63-2cb8-496f-a7dc-e8d6c065f5bf.rna_seq.transcriptome.gdc_realn.bam 9249448288 BAM transcriptome harmonized CPTAC3 ce1eec2c-ce8a-4f6f-9792-a32ddca7cb48 d4ff717611b2076e353dc6ccc105b1fe { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor' } +C3L-04889.RNA-Seq.chimeric.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 5f6c17b9-659d-4e7d-858a-981518de176f.rna_seq.chimeric.gdc_realn.bam 82907787 BAM chimeric harmonized CPTAC3 c4f91a75-91ca-4a19-ac2c-4d8272f7d0f2 4ab1d4731df5214d652ecca8ea006f7f { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04889.RNA-Seq.chimeric.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 c65b2556-f4c5-4edf-a4f3-adbb3bc01d9a.rna_seq.chimeric.gdc_realn.bam 42889597 BAM chimeric harmonized CPTAC3 fae13732-d400-443a-9056-7f52ee5094a0 574d04ee0d80e077be54a196d3c5b3f3 { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor' } +C3L-04889.RNA-Seq.genomic.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 5f6c17b9-659d-4e7d-858a-981518de176f.rna_seq.genomic.gdc_realn.bam 8071297089 BAM genomic harmonized CPTAC3 c5142e0e-d83f-46b4-8379-fe4b94920150 6932bf0444b24f6880f13b0cbd689ad4 { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04889.RNA-Seq.genomic.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 c65b2556-f4c5-4edf-a4f3-adbb3bc01d9a.rna_seq.genomic.gdc_realn.bam 8227485803 BAM genomic harmonized CPTAC3 77d377b1-5c55-46cb-a043-c383c5354620 403bf9e723712936a3f09a22029a692e { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor' } +C3L-04889.RNA-Seq.R1_L004.A C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 200505_UNC31-K00269_0277_AHGFKNBBXY_TAAGGTCA-TGTCGTAG_S15_L004_R1_001.fastq.gz 4003967585 FASTQ R1_L004 unaligned CPTAC3 118ec532-9720-42b4-8294-d45af9626739 701cc2f7d5c5c4cf6ab5947e00827553 { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-04889.RNA-Seq.R1_L008.T C3L-04889 LSCC RNA-Seq tumor CPT0267670009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGAACTG-CACTACGA_S29_L008_R1_001.fastq.gz 3797742630 FASTQ R1_L008 unaligned CPTAC3 c87b369f-d2b6-46f4-bcca-290a7a5b8b08 6e13a5627d3879d56f35feb90380f796 { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-04889.RNA-Seq.R2_L004.A C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 200505_UNC31-K00269_0277_AHGFKNBBXY_TAAGGTCA-TGTCGTAG_S15_L004_R2_001.fastq.gz 4410790939 FASTQ R2_L004 unaligned CPTAC3 729a5650-c170-412b-ab2f-8e93883b4eae c09143b47acef6eac82076b1600add9f { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-04889.RNA-Seq.R2_L008.T C3L-04889 LSCC RNA-Seq tumor CPT0267670009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGAACTG-CACTACGA_S29_L008_R2_001.fastq.gz 4104660907 FASTQ R2_L008 unaligned CPTAC3 324c04ab-2b75-4417-90c8-01debcd8df70 08f0a866d88b54eebdd7ae0a6e63addb { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-04889.RNA-Seq.transcriptome.A.hg38 C3L-04889 LSCC RNA-Seq tissue_normal CPT0267700009 5f6c17b9-659d-4e7d-858a-981518de176f.rna_seq.transcriptome.gdc_realn.bam 9814069627 BAM transcriptome harmonized CPTAC3 e2d8d9a4-a104-4707-9e1d-450077dec6e5 3ff2affdba7243f783fdf82f0873877c { 'aliquot_tag': 'ALQ_5120c85e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04889.RNA-Seq.transcriptome.T.hg38 C3L-04889 LSCC RNA-Seq tumor CPT0267670009 c65b2556-f4c5-4edf-a4f3-adbb3bc01d9a.rna_seq.transcriptome.gdc_realn.bam 10286490519 BAM transcriptome harmonized CPTAC3 08e99d5f-f8c2-4ebb-b43e-375abd60e795 23f7045a47bc7e95b4252ebb24c6efce { 'aliquot_tag': 'ALQ_285cc7eb', 'gdc_sample_type': 'Primary Tumor' } C3L-04889.WGS.N C3L-04889 LSCC WGS blood_normal CPT0267790002 CPT0267790002.WholeGenome.RP-2158.bam 25689343028 BAM aligned CPTAC3 85fc8b87-8297-4e43-bdaf-3f5ed87c23a2 3f8d1a643b3465d730172a5f8ecdcb88 { 'aliquot_tag': 'ALQ_cbe273a7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04889.WGS.N.hg38 C3L-04889 LSCC WGS blood_normal CPT0267790002 a53c2467-4e6f-4d84-a6b8-5c26eca640ca_wgs_gdc_realn.bam 75817414984 BAM harmonized CPTAC3 d5a6e3b7-70c9-49fa-a2a1-66a924932a1f b596742dc702a8679356c15ac5191616 { 'aliquot_tag': 'ALQ_cbe273a7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04889.WGS.T C3L-04889 LSCC WGS tumor CPT0267670006 CPT0267670006.WholeGenome.RP-2158.bam 24753593308 BAM aligned CPTAC3 1911ae31-f68a-46e3-a610-e6e77e8fbcb1 3e086a549d9bfe576546fd7be9f8f1a7 { 'aliquot_tag': 'ALQ_b8e3da7a', 'gdc_sample_type': 'Primary Tumor' } @@ -16626,16 +17593,16 @@ C3L-04912.miRNA-Seq.A.hg38 C3L-04912 LSCC miRNA-Seq tissue_normal CPT0254400009 C3L-04912.miRNA-Seq.T C3L-04912 LSCC miRNA-Seq tumor CPT0254350009 200224_UNC31-K00269_0267_AHC722BBXY_CAGGCG_S33_L007_R1_001.unaln.bam 153277532 BAM unaligned CPTAC3 7ecb8141-2188-4a64-8ea5-e7ed6a20e1eb 2516c17faf8c4a463faff5b05bda6deb { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } C3L-04912.miRNA-Seq.T C3L-04912 LSCC miRNA-Seq tumor CPT0254350009 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGGCG_S4_L001_R1_001.unaln.bam 168440443 BAM unaligned CPTAC3 343f92d5-4124-4231-8700-92a3990424c7 823610fd9e03ab58452ad383975290d7 { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } C3L-04912.miRNA-Seq.T.hg38 C3L-04912 LSCC miRNA-Seq tumor CPT0254350009 dd47a243-a0b5-4e4a-8977-1875b9e9b01d_mirnaseq_gdc_realn.bam 374447994 BAM harmonized CPTAC3 492698b9-a9fd-4605-a1ac-4244e8db64c9 088f63b6e2b4e4c03fb622e4abf471b9 { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } -C3L-04912.RNA-Seq.chimeric.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 dfb85600-0847-44fd-bfc1-de0faac10509.rna_seq.chimeric.gdc_realn.bam 72829465 BAM chimeric harmonized CPTAC3 3fa9df2c-f0a9-494c-a40c-7f8db43af44a 7d1ea1e97a5f4e75c321d9ea6b8bb2ec { 'aliquot_tag': 'ALQ_68d3a78e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04912.RNA-Seq.chimeric.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 f7563231-c807-42d4-a2d8-0898bab27915.rna_seq.chimeric.gdc_realn.bam 32013319 BAM chimeric harmonized CPTAC3 744c4b23-3bdd-4d0e-be29-34b529410f79 9088967a73519d6b40f6a1951d7606f8 { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } -C3L-04912.RNA-Seq.genomic.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 dfb85600-0847-44fd-bfc1-de0faac10509.rna_seq.genomic.gdc_realn.bam 7654743971 BAM genomic harmonized CPTAC3 f6dd76e2-b2f8-44fa-a55d-62dfcfd6911f 075d8895b1f836285da44eb68f1895e2 { 'aliquot_tag': 'ALQ_68d3a78e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04912.RNA-Seq.genomic.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 f7563231-c807-42d4-a2d8-0898bab27915.rna_seq.genomic.gdc_realn.bam 7166824437 BAM genomic harmonized CPTAC3 9f8f78ed-5a1d-4eb3-845f-c7d6b6151803 3e99a3e1906dbfab057bed1b9a079a90 { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } -C3L-04912.RNA-Seq.R1_L001.A C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 200505_UNC31-K00269_0277_AHGFKNBBXY_GGTGAACC-GCGTTGGA_S4_L001_R1_001.fastq.gz 3587377683 FASTQ R1_L001 unaligned CPTAC3 036496c6-d921-4da0-a332-7c70a5475890 b5302feb5071433391d81d6630c38591 { 'aliquot_tag': 'ALQ_68d3a78e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04912.RNA-Seq.R1_L001.T C3L-04912 LSCC RNA-Seq tumor CPT0254350009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TACCGAGG-CCTGAACT_S1_L001_R1_001.fastq.gz 3436316001 FASTQ R1_L001 unaligned CPTAC3 f9770c9b-09a9-4df6-a6ea-edbdfeb60bf0 cd3fc82ada0f31d34446c244a647a7bd { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } -C3L-04912.RNA-Seq.R2_L001.A C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 200505_UNC31-K00269_0277_AHGFKNBBXY_GGTGAACC-GCGTTGGA_S4_L001_R2_001.fastq.gz 4113520732 FASTQ R2_L001 unaligned CPTAC3 1a3fc70a-ecd1-45d6-a44d-cc124aafdbb3 f61f775c9972d616f108cf234e3f156b { 'aliquot_tag': 'ALQ_68d3a78e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04912.RNA-Seq.R2_L001.T C3L-04912 LSCC RNA-Seq tumor CPT0254350009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TACCGAGG-CCTGAACT_S1_L001_R2_001.fastq.gz 3923198924 FASTQ R2_L001 unaligned CPTAC3 8b0cb2b2-bd84-4f90-a21c-42eb722d5545 da22980ee6135a1b2bdd625d9dd4bc44 { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } -C3L-04912.RNA-Seq.transcriptome.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 dfb85600-0847-44fd-bfc1-de0faac10509.rna_seq.transcriptome.gdc_realn.bam 8010306254 BAM transcriptome harmonized CPTAC3 ed4823a4-1c6f-4024-95a6-6a6029c57ab6 da81ea9849a2e892cc5c98d8f88abf50 { 'aliquot_tag': 'ALQ_68d3a78e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04912.RNA-Seq.transcriptome.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 f7563231-c807-42d4-a2d8-0898bab27915.rna_seq.transcriptome.gdc_realn.bam 7927144829 BAM transcriptome harmonized CPTAC3 c5a29247-e6b2-4b34-b5f7-91193b4a28ba d960ab24bf91bb65a281032f476401e1 { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } +C3L-04912.RNA-Seq.chimeric.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 00437633-453b-412b-a72e-13c563f05cbe.rna_seq.chimeric.gdc_realn.bam 72821669 BAM chimeric harmonized CPTAC3 a8d55603-6b05-4bf1-a4fa-0d0d31452cc5 6564ba5db6446c1270808eca594adcae { 'aliquot_tag': 'ALQ_68d3a78e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04912.RNA-Seq.chimeric.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 a2deca0c-b12e-4721-a9b5-4c1aef86898a.rna_seq.chimeric.gdc_realn.bam 32012959 BAM chimeric harmonized CPTAC3 6bc734ac-7b80-4102-bb85-68ba95ad4ce3 e1676bd70b46350175c01230f80b1c23 { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } +C3L-04912.RNA-Seq.genomic.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 00437633-453b-412b-a72e-13c563f05cbe.rna_seq.genomic.gdc_realn.bam 7656141607 BAM genomic harmonized CPTAC3 54bae130-2885-401f-81b0-4d7735049c6d d74152a6c9c40e4ffee8bba83efc650b { 'aliquot_tag': 'ALQ_68d3a78e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04912.RNA-Seq.genomic.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 a2deca0c-b12e-4721-a9b5-4c1aef86898a.rna_seq.genomic.gdc_realn.bam 7168922861 BAM genomic harmonized CPTAC3 394a88fc-2410-4d15-a399-76cd0e6112d3 2e981a5e9b865f5aea905e7e0237722b { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } +C3L-04912.RNA-Seq.R1_L001.A C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 200505_UNC31-K00269_0277_AHGFKNBBXY_GGTGAACC-GCGTTGGA_S4_L001_R1_001.fastq.gz 3587377683 FASTQ R1_L001 unaligned CPTAC3 036496c6-d921-4da0-a332-7c70a5475890 b5302feb5071433391d81d6630c38591 { 'aliquot_tag': 'ALQ_68d3a78e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-04912.RNA-Seq.R1_L001.T C3L-04912 LSCC RNA-Seq tumor CPT0254350009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TACCGAGG-CCTGAACT_S1_L001_R1_001.fastq.gz 3436316001 FASTQ R1_L001 unaligned CPTAC3 f9770c9b-09a9-4df6-a6ea-edbdfeb60bf0 cd3fc82ada0f31d34446c244a647a7bd { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-04912.RNA-Seq.R2_L001.A C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 200505_UNC31-K00269_0277_AHGFKNBBXY_GGTGAACC-GCGTTGGA_S4_L001_R2_001.fastq.gz 4113520732 FASTQ R2_L001 unaligned CPTAC3 1a3fc70a-ecd1-45d6-a44d-cc124aafdbb3 f61f775c9972d616f108cf234e3f156b { 'aliquot_tag': 'ALQ_68d3a78e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-04912.RNA-Seq.R2_L001.T C3L-04912 LSCC RNA-Seq tumor CPT0254350009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TACCGAGG-CCTGAACT_S1_L001_R2_001.fastq.gz 3923198924 FASTQ R2_L001 unaligned CPTAC3 8b0cb2b2-bd84-4f90-a21c-42eb722d5545 da22980ee6135a1b2bdd625d9dd4bc44 { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-04912.RNA-Seq.transcriptome.A.hg38 C3L-04912 LSCC RNA-Seq tissue_normal CPT0254400009 00437633-453b-412b-a72e-13c563f05cbe.rna_seq.transcriptome.gdc_realn.bam 9147088091 BAM transcriptome harmonized CPTAC3 7a8536ca-a5df-44d4-a320-f1a3d3b936a5 85eca8c7ee48ce9b8ff953b07ef51411 { 'aliquot_tag': 'ALQ_68d3a78e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04912.RNA-Seq.transcriptome.T.hg38 C3L-04912 LSCC RNA-Seq tumor CPT0254350009 a2deca0c-b12e-4721-a9b5-4c1aef86898a.rna_seq.transcriptome.gdc_realn.bam 8986186648 BAM transcriptome harmonized CPTAC3 8a003023-3ebe-44a4-8d33-9fc021594afb e137c614fadda20210cd1b5eb12e05c6 { 'aliquot_tag': 'ALQ_bd361846', 'gdc_sample_type': 'Primary Tumor' } C3L-04912.WGS.N C3L-04912 LSCC WGS blood_normal CPT0254490002 CPT0254490002.WholeGenome.RP-2158.bam 32121951882 BAM aligned CPTAC3 e80b8a5b-a8f3-47b0-ac58-23f3fc09c711 f85d8899c3d0b8b543119392deba95dc { 'aliquot_tag': 'ALQ_f2111c77', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04912.WGS.N.hg38 C3L-04912 LSCC WGS blood_normal CPT0254490002 00c8e708-0b26-4993-a88c-77f89ee28cff_wgs_gdc_realn.bam 93877810004 BAM harmonized CPTAC3 7bcb216f-65c8-426f-8151-d03834b16ccb 62eb0710442958cb73445c8fa54b2e4e { 'aliquot_tag': 'ALQ_f2111c77', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04912.WGS.T C3L-04912 LSCC WGS tumor CPT0254350006 CPT0254350006.WholeGenome.RP-2158.bam 24090676120 BAM aligned CPTAC3 35091386-0e2d-4abf-bebd-33426f47adf6 6b2aadb1ce1fe2f112a9ff4097009566 { 'aliquot_tag': 'ALQ_2d8905d7', 'gdc_sample_type': 'Primary Tumor' } @@ -16654,16 +17621,16 @@ C3L-04916.miRNA-Seq.A C3L-04916 LSCC miRNA-Seq tissue_normal CPT0253860009 20051 C3L-04916.miRNA-Seq.A.hg38 C3L-04916 LSCC miRNA-Seq tissue_normal CPT0253860009 bc73a744-bfc8-402c-b4f9-4f841397cec8_mirnaseq_gdc_realn.bam 244716330 BAM harmonized CPTAC3 0fc8227a-b774-499b-9d6f-8d9126748a9b 2ea3eca7a5153d4b92f02d4935b60302 { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04916.miRNA-Seq.T C3L-04916 LSCC miRNA-Seq tumor CPT0253820009 200224_UNC31-K00269_0267_AHC722BBXY_CACCGG_S30_L007_R1_001.unaln.bam 193871673 BAM unaligned CPTAC3 0904ad3f-cc9e-4a93-bfa6-79eaea1873bf c0545c72642711a28b0dd00a813aae87 { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor' } C3L-04916.miRNA-Seq.T.hg38 C3L-04916 LSCC miRNA-Seq tumor CPT0253820009 e39a35af-0a4c-4b34-9c98-161cdab47f17_mirnaseq_gdc_realn.bam 214894132 BAM harmonized CPTAC3 afc8adc7-e87e-46a1-8ec0-58ab9f3e72d2 83df8b4ea683e15642f5dd896151843a { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-04916.RNA-Seq.chimeric.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 3b57e303-0710-4d2f-9768-62055c4ed078.rna_seq.chimeric.gdc_realn.bam 86968075 BAM chimeric harmonized CPTAC3 083a36c5-c74f-4688-b18d-8c597f674057 52e352a150f8c04b9ac5fbaedc8d8dfa { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04916.RNA-Seq.chimeric.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 12cd6721-c850-4e59-9699-368e8a0b00b6.rna_seq.chimeric.gdc_realn.bam 30587568 BAM chimeric harmonized CPTAC3 aaaab165-0cb8-4584-b246-69835af3f4c6 dcc4e51888e2345015bf173948b5e8af { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-04916.RNA-Seq.genomic.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 3b57e303-0710-4d2f-9768-62055c4ed078.rna_seq.genomic.gdc_realn.bam 8717804048 BAM genomic harmonized CPTAC3 8a3e7252-6eb1-41ef-934e-d49ce334bdde 19b0e9eb63c9d85bbbf3487249282895 { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04916.RNA-Seq.genomic.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 12cd6721-c850-4e59-9699-368e8a0b00b6.rna_seq.genomic.gdc_realn.bam 7736478856 BAM genomic harmonized CPTAC3 5087fd9f-481b-44b7-ab14-8373f63af9b3 cbbe0848c0599214d30346c94b84f0d6 { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-04916.RNA-Seq.R1_L001.A C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 200505_UNC31-K00269_0277_AHGFKNBBXY_ATATCTCG-ATCTTAGT_S2_L001_R1_001.fastq.gz 4247172933 FASTQ R1_L001 unaligned CPTAC3 b67de956-fe78-45f8-8813-35042c29c81b 1623dc8cad427495ded52e7229f2c9d8 { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04916.RNA-Seq.R1_L004.T C3L-04916 LSCC RNA-Seq tumor CPT0253820009 200428_UNC31-K00269_0276_BHH5TMBBXY_TTACAGGA-TGACAAGC_S14_L004_R1_001.fastq.gz 3753245339 FASTQ R1_L004 unaligned CPTAC3 db28b53c-8f86-46dd-b62b-989f8909d92e 16952691e0dcd8c975a2c9a7ff1fe3ff { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-04916.RNA-Seq.R2_L001.A C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 200505_UNC31-K00269_0277_AHGFKNBBXY_ATATCTCG-ATCTTAGT_S2_L001_R2_001.fastq.gz 4773647924 FASTQ R2_L001 unaligned CPTAC3 9370ba3d-5ec0-49b8-abc8-2efa8fa4644f aed9037ead72a286a74a1e2b78831212 { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04916.RNA-Seq.R2_L004.T C3L-04916 LSCC RNA-Seq tumor CPT0253820009 200428_UNC31-K00269_0276_BHH5TMBBXY_TTACAGGA-TGACAAGC_S14_L004_R2_001.fastq.gz 4043813321 FASTQ R2_L004 unaligned CPTAC3 f7f37873-fe64-4257-8d45-c77aa913b746 5ffa67307f39209ba7885bea7bd723dc { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor' } -C3L-04916.RNA-Seq.transcriptome.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 3b57e303-0710-4d2f-9768-62055c4ed078.rna_seq.transcriptome.gdc_realn.bam 9658911199 BAM transcriptome harmonized CPTAC3 f5264687-39bd-4e3f-a5f6-ed1fca0b62fd c51466883038ffc42cd1ae11fe6de3e9 { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04916.RNA-Seq.transcriptome.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 12cd6721-c850-4e59-9699-368e8a0b00b6.rna_seq.transcriptome.gdc_realn.bam 9823062826 BAM transcriptome harmonized CPTAC3 6b5349bc-913f-445c-9200-c80882618ca3 ba765c900cafe2ad2d7878390dd39a9c { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor' } +C3L-04916.RNA-Seq.chimeric.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 4cafd718-e3dc-4527-9411-9f7f3531e526.rna_seq.chimeric.gdc_realn.bam 86947610 BAM chimeric harmonized CPTAC3 cc0c4c82-297f-40eb-8d7d-51209146f777 dfa1525027f8b3cfa4904c00c3fe6585 { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04916.RNA-Seq.chimeric.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 2bbc3d61-320b-4939-8628-6adf10eaf270.rna_seq.chimeric.gdc_realn.bam 30583865 BAM chimeric harmonized CPTAC3 92014b85-caff-449f-b211-32fedbd0a2fb ffbe66fbfa7364b5b8eb7534ff2dfd57 { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor' } +C3L-04916.RNA-Seq.genomic.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 4cafd718-e3dc-4527-9411-9f7f3531e526.rna_seq.genomic.gdc_realn.bam 8719010305 BAM genomic harmonized CPTAC3 30b96c26-8d5b-46f2-b67e-f44aa90247e1 b73a683099d4bab51825c76f9915a1ea { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04916.RNA-Seq.genomic.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 2bbc3d61-320b-4939-8628-6adf10eaf270.rna_seq.genomic.gdc_realn.bam 7738383461 BAM genomic harmonized CPTAC3 cd418da1-6167-4741-9e2f-a0bc27f123e2 dac8a96fb33b92fa0178d5245a48b6a5 { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor' } +C3L-04916.RNA-Seq.R1_L001.A C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 200505_UNC31-K00269_0277_AHGFKNBBXY_ATATCTCG-ATCTTAGT_S2_L001_R1_001.fastq.gz 4247172933 FASTQ R1_L001 unaligned CPTAC3 b67de956-fe78-45f8-8813-35042c29c81b 1623dc8cad427495ded52e7229f2c9d8 { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-04916.RNA-Seq.R1_L004.T C3L-04916 LSCC RNA-Seq tumor CPT0253820009 200428_UNC31-K00269_0276_BHH5TMBBXY_TTACAGGA-TGACAAGC_S14_L004_R1_001.fastq.gz 3753245339 FASTQ R1_L004 unaligned CPTAC3 db28b53c-8f86-46dd-b62b-989f8909d92e 16952691e0dcd8c975a2c9a7ff1fe3ff { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04916.RNA-Seq.R2_L001.A C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 200505_UNC31-K00269_0277_AHGFKNBBXY_ATATCTCG-ATCTTAGT_S2_L001_R2_001.fastq.gz 4773647924 FASTQ R2_L001 unaligned CPTAC3 9370ba3d-5ec0-49b8-abc8-2efa8fa4644f aed9037ead72a286a74a1e2b78831212 { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-04916.RNA-Seq.R2_L004.T C3L-04916 LSCC RNA-Seq tumor CPT0253820009 200428_UNC31-K00269_0276_BHH5TMBBXY_TTACAGGA-TGACAAGC_S14_L004_R2_001.fastq.gz 4043813321 FASTQ R2_L004 unaligned CPTAC3 f7f37873-fe64-4257-8d45-c77aa913b746 5ffa67307f39209ba7885bea7bd723dc { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-04916.RNA-Seq.transcriptome.A.hg38 C3L-04916 LSCC RNA-Seq tissue_normal CPT0253860009 4cafd718-e3dc-4527-9411-9f7f3531e526.rna_seq.transcriptome.gdc_realn.bam 11032579609 BAM transcriptome harmonized CPTAC3 c81118bb-5c33-4fac-a41c-2eed3d9988aa f3dc5cd0dcceadcb43dad536c77e0790 { 'aliquot_tag': 'ALQ_55f6acdb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04916.RNA-Seq.transcriptome.T.hg38 C3L-04916 LSCC RNA-Seq tumor CPT0253820009 2bbc3d61-320b-4939-8628-6adf10eaf270.rna_seq.transcriptome.gdc_realn.bam 11133351417 BAM transcriptome harmonized CPTAC3 2e194f18-7c9d-4645-b916-3bce8c405e1a e3ba495520afd866651e44c0769bfca0 { 'aliquot_tag': 'ALQ_a0760a1b', 'gdc_sample_type': 'Primary Tumor' } C3L-04916.WGS.N C3L-04916 LSCC WGS blood_normal CPT0253950002 CPT0253950002.WholeGenome.RP-2158.bam 27211685550 BAM aligned CPTAC3 64f33867-6b66-4106-b028-84200d62ffe3 d40c95c7b24f1e5aa0d4b1d077264f66 { 'aliquot_tag': 'ALQ_4ed8dc26', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04916.WGS.N.hg38 C3L-04916 LSCC WGS blood_normal CPT0253950002 19045df1-920b-4394-9a2c-7efac1afdbce_wgs_gdc_realn.bam 83404250762 BAM harmonized CPTAC3 0c3c18a9-693d-4d7c-811e-43a69ccb9861 6219f8552a4819e0e11e6623780b8b6e { 'aliquot_tag': 'ALQ_4ed8dc26', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04916.WGS.T C3L-04916 LSCC WGS tumor CPT0253820006 CPT0253820006.WholeGenome.RP-2158.bam 23192852802 BAM aligned CPTAC3 a31bba1d-0dd8-4405-a947-63f8798dad8e 16b04c6b2a69d0b9e1df2d89638ddbf5 { 'aliquot_tag': 'ALQ_30c9178a', 'gdc_sample_type': 'Primary Tumor' } @@ -16682,16 +17649,16 @@ C3L-04921.miRNA-Seq.A C3L-04921 LSCC miRNA-Seq tissue_normal CPT0252770006 20051 C3L-04921.miRNA-Seq.A.hg38 C3L-04921 LSCC miRNA-Seq tissue_normal CPT0252770006 55c05fa7-1b33-4ce6-afbe-dfde2fe7d6f5_mirnaseq_gdc_realn.bam 202404036 BAM harmonized CPTAC3 16058bfc-17bd-417b-a01a-594c1daad293 97a549f2c9f708db677e4c9e7beb324c { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04921.miRNA-Seq.T C3L-04921 LSCC miRNA-Seq tumor CPT0252750013 200325_UNC31-K00269_0272_AHHC2NBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 168810704 BAM unaligned CPTAC3 2e31a7c2-f5ce-465b-adb5-61bb7cfce6ff e11e1095220d27564356c1fc5437d249 { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor' } C3L-04921.miRNA-Seq.T.hg38 C3L-04921 LSCC miRNA-Seq tumor CPT0252750013 d736bee0-7cf3-4d03-a840-3e8f35074d67_mirnaseq_gdc_realn.bam 183859694 BAM harmonized CPTAC3 678b5cc6-0d79-49f4-8f52-e15b81f9aedf 8df9e3f2bcf12707d65fc9867e26014b { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor' } -C3L-04921.RNA-Seq.chimeric.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 44762e5d-de8e-45d8-8ee9-8116ce9facac.rna_seq.chimeric.gdc_realn.bam 34844974 BAM chimeric harmonized CPTAC3 cb606882-0093-423a-88fa-282af0597214 37078edc9d1228ca9b936328f2e1419b { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04921.RNA-Seq.chimeric.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 993102c9-2366-4bcb-a258-c4cbe7e19ac5.rna_seq.chimeric.gdc_realn.bam 68734062 BAM chimeric harmonized CPTAC3 92b7b65b-b7a6-4158-9d35-61c96548a472 a700f4748d43e9ab43b6ed6b3712fa3f { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor' } -C3L-04921.RNA-Seq.genomic.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 44762e5d-de8e-45d8-8ee9-8116ce9facac.rna_seq.genomic.gdc_realn.bam 9276336774 BAM genomic harmonized CPTAC3 831e8a35-6615-4e7c-aebb-c3ac2dcc9657 24dab59e19ee787bf3531e18e1d0f83e { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04921.RNA-Seq.genomic.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 993102c9-2366-4bcb-a258-c4cbe7e19ac5.rna_seq.genomic.gdc_realn.bam 7613336391 BAM genomic harmonized CPTAC3 ac116dd3-ddb0-4821-bd11-fdd9c8b9499d a8ba40aba80954ad8de432fd61d2a78c { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor' } -C3L-04921.RNA-Seq.R1_L006.A C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGACAAC-TCCGGATT_S21_L006_R1_001.fastq.gz 4162750082 FASTQ R1_L006 unaligned CPTAC3 a90e194a-4b94-4312-a3f4-69ac0c520e90 199b6300fb45c0a4edc93e6a6c9ba109 { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04921.RNA-Seq.R1_L006.T C3L-04921 LSCC RNA-Seq tumor CPT0252750013 200428_UNC31-K00269_0275_AHGCJVBBXY_TCTGTTGG-TCGAATGG_S24_L006_R1_001.fastq.gz 3672634106 FASTQ R1_L006 unaligned CPTAC3 4ed05607-7dec-4e7e-86c3-01b85e9c96e4 c487a79b13192a7ac62347d46feaa249 { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor' } -C3L-04921.RNA-Seq.R2_L006.A C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGACAAC-TCCGGATT_S21_L006_R2_001.fastq.gz 5149041292 FASTQ R2_L006 unaligned CPTAC3 242152e6-2216-45db-a8a3-df068b26d22f 27ce5bebfba9323318cd1651680c35d4 { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04921.RNA-Seq.R2_L006.T C3L-04921 LSCC RNA-Seq tumor CPT0252750013 200428_UNC31-K00269_0275_AHGCJVBBXY_TCTGTTGG-TCGAATGG_S24_L006_R2_001.fastq.gz 3857705611 FASTQ R2_L006 unaligned CPTAC3 079c546b-c03b-4638-8cea-0d3fb3b6326c ba02468840987eaf2c07ce223970289f { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor' } -C3L-04921.RNA-Seq.transcriptome.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 44762e5d-de8e-45d8-8ee9-8116ce9facac.rna_seq.transcriptome.gdc_realn.bam 9590726538 BAM transcriptome harmonized CPTAC3 4ca6dcfa-6fd5-4b09-a5ce-4163dd9116c7 2cbf1bd778683c84e2d1ebda6f4501cd { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04921.RNA-Seq.transcriptome.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 993102c9-2366-4bcb-a258-c4cbe7e19ac5.rna_seq.transcriptome.gdc_realn.bam 9383375479 BAM transcriptome harmonized CPTAC3 01b9fefb-aaf2-4b4f-93c0-ea6b74b53539 d8d8df5ab69cf0da9ebc8c1b7a42573b { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor' } +C3L-04921.RNA-Seq.chimeric.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 e5e82e40-5f0c-4e1d-bcdb-acc57156b0a0.rna_seq.chimeric.gdc_realn.bam 34824789 BAM chimeric harmonized CPTAC3 c0eacd83-87e7-4559-8970-6fa3b14d38b9 39e604750dbc2c4720641f76f3ffeab9 { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04921.RNA-Seq.chimeric.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 396ebdc1-6a54-43a0-af8b-00eae213e3b1.rna_seq.chimeric.gdc_realn.bam 68738103 BAM chimeric harmonized CPTAC3 8111320a-dc1a-495b-a800-025a8c966cf4 8605f3fa64a9feac9b02c47bef8f419e { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor' } +C3L-04921.RNA-Seq.genomic.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 e5e82e40-5f0c-4e1d-bcdb-acc57156b0a0.rna_seq.genomic.gdc_realn.bam 9277471277 BAM genomic harmonized CPTAC3 d0cf93b0-730f-4d3c-9617-c2cea29702ec d1cb6a647a72204a5622d65a73acdff3 { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04921.RNA-Seq.genomic.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 396ebdc1-6a54-43a0-af8b-00eae213e3b1.rna_seq.genomic.gdc_realn.bam 7619258910 BAM genomic harmonized CPTAC3 c0d36be2-2d39-4c6f-a5bf-5ff4d30f2497 b3dcf0eda013e3e449810e8716676fff { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor' } +C3L-04921.RNA-Seq.R1_L006.A C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGACAAC-TCCGGATT_S21_L006_R1_001.fastq.gz 4162750082 FASTQ R1_L006 unaligned CPTAC3 a90e194a-4b94-4312-a3f4-69ac0c520e90 199b6300fb45c0a4edc93e6a6c9ba109 { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-04921.RNA-Seq.R1_L006.T C3L-04921 LSCC RNA-Seq tumor CPT0252750013 200428_UNC31-K00269_0275_AHGCJVBBXY_TCTGTTGG-TCGAATGG_S24_L006_R1_001.fastq.gz 3672634106 FASTQ R1_L006 unaligned CPTAC3 4ed05607-7dec-4e7e-86c3-01b85e9c96e4 c487a79b13192a7ac62347d46feaa249 { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-04921.RNA-Seq.R2_L006.A C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGACAAC-TCCGGATT_S21_L006_R2_001.fastq.gz 5149041292 FASTQ R2_L006 unaligned CPTAC3 242152e6-2216-45db-a8a3-df068b26d22f 27ce5bebfba9323318cd1651680c35d4 { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-04921.RNA-Seq.R2_L006.T C3L-04921 LSCC RNA-Seq tumor CPT0252750013 200428_UNC31-K00269_0275_AHGCJVBBXY_TCTGTTGG-TCGAATGG_S24_L006_R2_001.fastq.gz 3857705611 FASTQ R2_L006 unaligned CPTAC3 079c546b-c03b-4638-8cea-0d3fb3b6326c ba02468840987eaf2c07ce223970289f { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-04921.RNA-Seq.transcriptome.A.hg38 C3L-04921 LSCC RNA-Seq tissue_normal CPT0252770006 e5e82e40-5f0c-4e1d-bcdb-acc57156b0a0.rna_seq.transcriptome.gdc_realn.bam 10875089529 BAM transcriptome harmonized CPTAC3 36371255-7cbc-4811-9d5e-53125d8daee5 219862b061c904f73d15611e5cecb0d3 { 'aliquot_tag': 'ALQ_af08219b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04921.RNA-Seq.transcriptome.T.hg38 C3L-04921 LSCC RNA-Seq tumor CPT0252750013 396ebdc1-6a54-43a0-af8b-00eae213e3b1.rna_seq.transcriptome.gdc_realn.bam 10123207158 BAM transcriptome harmonized CPTAC3 703241da-ea9d-4c77-ae25-254873e5e979 140cdda81b16b365df0b8ec95746c729 { 'aliquot_tag': 'ALQ_bcb9b735', 'gdc_sample_type': 'Primary Tumor' } C3L-04921.WGS.N C3L-04921 LSCC WGS blood_normal CPT0252880002 CPT0252880002.WholeGenome.RP-2158.bam 21698223377 BAM aligned CPTAC3 5e234217-beb3-4049-a5de-019d6994afa0 6b5c9c2ac5023985670ce7c2acc34f05 { 'aliquot_tag': 'ALQ_db63c086', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04921.WGS.N.hg38 C3L-04921 LSCC WGS blood_normal CPT0252880002 bc1c32a3-372a-45bf-a6bd-1374ff7922fb_wgs_gdc_realn.bam 64859253722 BAM harmonized CPTAC3 e666531d-597f-4ea1-8ebb-96f4d3cc4ade e91b39cfbdbb357d059b8cd51b14c15a { 'aliquot_tag': 'ALQ_db63c086', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04921.WGS.T C3L-04921 LSCC WGS tumor CPT0252750006 CPT0252750006.WholeGenome.RP-2158.bam 29474446084 BAM aligned CPTAC3 2a0ab715-a72e-4dae-8806-807f0b13f613 9a69942825ad93b93bd1547d5fe664c2 { 'aliquot_tag': 'ALQ_d5c872fb', 'gdc_sample_type': 'Primary Tumor' } @@ -16710,16 +17677,16 @@ C3L-04922.miRNA-Seq.A C3L-04922 LSCC miRNA-Seq tissue_normal CPT0254030009 20051 C3L-04922.miRNA-Seq.A.hg38 C3L-04922 LSCC miRNA-Seq tissue_normal CPT0254030009 eaa5d6c2-d828-470a-887e-0082f7752891_mirnaseq_gdc_realn.bam 295487736 BAM harmonized CPTAC3 6c6be620-75b8-4c03-b2d0-4d5bf90cd4ad 6ee569b15a9837187f9ed1b4386a7016 { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-04922.miRNA-Seq.T C3L-04922 LSCC miRNA-Seq tumor CPT0254010009 200224_UNC31-K00269_0267_AHC722BBXY_CACGAT_S31_L007_R1_001.unaln.bam 257275759 BAM unaligned CPTAC3 41a2e164-6e29-4370-a814-a85950523016 f34c293cd35f95814b6511a6d5ce0d06 { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor' } C3L-04922.miRNA-Seq.T.hg38 C3L-04922 LSCC miRNA-Seq tumor CPT0254010009 6bc88405-3f2d-4a2f-b407-b320cdf48cec_mirnaseq_gdc_realn.bam 286934142 BAM harmonized CPTAC3 6e51edd3-7e9b-4358-97f9-619b662c0fa0 19e96e5a5870cee2248b3b402134000a { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor' } -C3L-04922.RNA-Seq.chimeric.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 43697891-176f-4869-b94c-3bc4c6a3b147.rna_seq.chimeric.gdc_realn.bam 94973204 BAM chimeric harmonized CPTAC3 07a10966-2a9a-42fe-8c18-4318712e560d cde9849d74d21340ad09c41b163f8866 { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04922.RNA-Seq.chimeric.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 6e633816-2808-456c-844a-8ad9ab6e83a9.rna_seq.chimeric.gdc_realn.bam 32127890 BAM chimeric harmonized CPTAC3 f1c91945-c853-4452-b91b-90fa9dbf1ed7 d8aca082f994a385414a0ddc7d6eb608 { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor' } -C3L-04922.RNA-Seq.genomic.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 43697891-176f-4869-b94c-3bc4c6a3b147.rna_seq.genomic.gdc_realn.bam 8460966972 BAM genomic harmonized CPTAC3 4b4caa4d-2c92-4709-bcd1-3019eb065bd7 02651d16d9058de9f45aaede331157ad { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04922.RNA-Seq.genomic.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 6e633816-2808-456c-844a-8ad9ab6e83a9.rna_seq.genomic.gdc_realn.bam 7670729855 BAM genomic harmonized CPTAC3 244ae02e-d6a4-44b3-a283-41b799a8da15 9f8ca9f1caaeca3d42359f8b218a77e9 { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor' } -C3L-04922.RNA-Seq.R1_L001.A C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 200505_UNC31-K00269_0277_AHGFKNBBXY_GCGCTCTA-GCTCCGAC_S3_L001_R1_001.fastq.gz 3975133314 FASTQ R1_L001 unaligned CPTAC3 88c980d2-f9dd-4f81-bb9f-6907d229b055 af91ba8a17cf26af322578586d367cb1 { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04922.RNA-Seq.R1_L004.T C3L-04922 LSCC RNA-Seq tumor CPT0254010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 3578547939 FASTQ R1_L004 unaligned CPTAC3 47f8b8c4-4dc0-41d8-a0bc-b943d8ecaaed 83477b0ca4d550518e61872e53096262 { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor' } -C3L-04922.RNA-Seq.R2_L001.A C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 200505_UNC31-K00269_0277_AHGFKNBBXY_GCGCTCTA-GCTCCGAC_S3_L001_R2_001.fastq.gz 4482970352 FASTQ R2_L001 unaligned CPTAC3 80027f20-5747-4f1a-84c7-efe9ef7d3bfd c6ab63e37e2b48b74cbe3321e3c95eba { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04922.RNA-Seq.R2_L004.T C3L-04922 LSCC RNA-Seq tumor CPT0254010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 3904371477 FASTQ R2_L004 unaligned CPTAC3 0ab6b521-f980-4560-8c83-39e7d958f5ba d224f663d144f836be733959637b0393 { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor' } -C3L-04922.RNA-Seq.transcriptome.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 43697891-176f-4869-b94c-3bc4c6a3b147.rna_seq.transcriptome.gdc_realn.bam 8910790415 BAM transcriptome harmonized CPTAC3 0532a304-d375-43d2-b334-5395c5db69b8 669f3fe0bbf504160e6e529c0e5d5e35 { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-04922.RNA-Seq.transcriptome.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 6e633816-2808-456c-844a-8ad9ab6e83a9.rna_seq.transcriptome.gdc_realn.bam 9478415827 BAM transcriptome harmonized CPTAC3 a9b95cba-9878-4119-bcf3-5931d62e4367 265308c28eb5c788795fb3ce16c3b92c { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor' } +C3L-04922.RNA-Seq.chimeric.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 55afdb0d-dc7f-45f1-9569-b5499ebefe8b.rna_seq.chimeric.gdc_realn.bam 94954220 BAM chimeric harmonized CPTAC3 3214a79b-0bbd-47ae-ad2f-0ce2df6ee7de 74d09ddf9d2ffd17c80b01c7cb9f9983 { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04922.RNA-Seq.chimeric.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 59d627bf-02b2-4d82-8de4-0ca319b02003.rna_seq.chimeric.gdc_realn.bam 32128014 BAM chimeric harmonized CPTAC3 6b3a26db-5cb4-4a31-b59f-308a29b89e0a b78f31a548827fe1925732fa6c186d8a { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor' } +C3L-04922.RNA-Seq.genomic.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 55afdb0d-dc7f-45f1-9569-b5499ebefe8b.rna_seq.genomic.gdc_realn.bam 8462284525 BAM genomic harmonized CPTAC3 07db0c52-a825-48fc-bbc8-9e4ec205f684 18550540a7369102c1f3075d03a681ff { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04922.RNA-Seq.genomic.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 59d627bf-02b2-4d82-8de4-0ca319b02003.rna_seq.genomic.gdc_realn.bam 7672123946 BAM genomic harmonized CPTAC3 8eeb5f5e-e039-465a-9db1-a50c4683b67a fa909e7922fc6ec56890a9da4ed293f1 { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor' } +C3L-04922.RNA-Seq.R1_L001.A C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 200505_UNC31-K00269_0277_AHGFKNBBXY_GCGCTCTA-GCTCCGAC_S3_L001_R1_001.fastq.gz 3975133314 FASTQ R1_L001 unaligned CPTAC3 88c980d2-f9dd-4f81-bb9f-6907d229b055 af91ba8a17cf26af322578586d367cb1 { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-04922.RNA-Seq.R1_L004.T C3L-04922 LSCC RNA-Seq tumor CPT0254010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 3578547939 FASTQ R1_L004 unaligned CPTAC3 47f8b8c4-4dc0-41d8-a0bc-b943d8ecaaed 83477b0ca4d550518e61872e53096262 { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-04922.RNA-Seq.R2_L001.A C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 200505_UNC31-K00269_0277_AHGFKNBBXY_GCGCTCTA-GCTCCGAC_S3_L001_R2_001.fastq.gz 4482970352 FASTQ R2_L001 unaligned CPTAC3 80027f20-5747-4f1a-84c7-efe9ef7d3bfd c6ab63e37e2b48b74cbe3321e3c95eba { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-04922.RNA-Seq.R2_L004.T C3L-04922 LSCC RNA-Seq tumor CPT0254010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 3904371477 FASTQ R2_L004 unaligned CPTAC3 0ab6b521-f980-4560-8c83-39e7d958f5ba d224f663d144f836be733959637b0393 { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-04922.RNA-Seq.transcriptome.A.hg38 C3L-04922 LSCC RNA-Seq tissue_normal CPT0254030009 55afdb0d-dc7f-45f1-9569-b5499ebefe8b.rna_seq.transcriptome.gdc_realn.bam 10122572278 BAM transcriptome harmonized CPTAC3 decda37d-69c9-40c2-82bd-144eed2b4e77 aa7679da65b3a4210789a939784ba2af { 'aliquot_tag': 'ALQ_b4e29f48', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-04922.RNA-Seq.transcriptome.T.hg38 C3L-04922 LSCC RNA-Seq tumor CPT0254010009 59d627bf-02b2-4d82-8de4-0ca319b02003.rna_seq.transcriptome.gdc_realn.bam 10644879199 BAM transcriptome harmonized CPTAC3 2bbb657a-67ab-4792-aa35-a049980e7607 16ebd20c96babc714256617c9e0a6e5f { 'aliquot_tag': 'ALQ_ce22cc28', 'gdc_sample_type': 'Primary Tumor' } C3L-04922.WGS.N C3L-04922 LSCC WGS blood_normal CPT0254130002 CPT0254130002.WholeGenome.RP-2158.bam 27961183031 BAM aligned CPTAC3 414cfcca-07d1-4f9f-b9b4-a2d182329812 5c958d6a855f85463e7dd29a3c419582 { 'aliquot_tag': 'ALQ_e86c9565', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04922.WGS.N.hg38 C3L-04922 LSCC WGS blood_normal CPT0254130002 23ce6b7b-bb94-4a97-95e9-d63cd0bea5e5_wgs_gdc_realn.bam 84359189370 BAM harmonized CPTAC3 23d7cd43-f08c-4a94-97d2-0ffea5a7cbb5 881a0ea44ee61a0dbb869c52f76560f5 { 'aliquot_tag': 'ALQ_e86c9565', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04922.WGS.T C3L-04922 LSCC WGS tumor CPT0254010006 CPT0254010006.WholeGenome.RP-2158.bam 27440633992 BAM aligned CPTAC3 fb552bf8-b4b5-44e6-a542-8b106c32a66f 5bdf959641b5c574f7c8574d3254370f { 'aliquot_tag': 'ALQ_5e9dd1b9', 'gdc_sample_type': 'Primary Tumor' } @@ -16730,17 +17697,35 @@ C3L-04922.WXS.N C3L-04922 LSCC WXS blood_normal CPT0254130002 CPT0254130002.Whol C3L-04922.WXS.N.hg38 C3L-04922 LSCC WXS blood_normal CPT0254130002 23ce6b7b-bb94-4a97-95e9-d63cd0bea5e5_wxs_gdc_realn.bam 36992373803 BAM harmonized CPTAC3 72c93155-cbfc-4453-9c3f-05b04b32935d 55b115f9a688d9e30be30785d38545e4 { 'aliquot_tag': 'ALQ_e86c9565', 'gdc_sample_type': 'Blood Derived Normal' } C3L-04922.WXS.T C3L-04922 LSCC WXS tumor CPT0254010006 CPT0254010006.WholeExome.RP-1303.bam 21149593006 BAM aligned CPTAC3 5ee82b78-3b25-43b9-934f-f09b83b82c2b abc4ec87ab0f0e94ee9da2bdef2b2058 { 'aliquot_tag': 'ALQ_5e9dd1b9', 'gdc_sample_type': 'Primary Tumor' } C3L-04922.WXS.T.hg38 C3L-04922 LSCC WXS tumor CPT0254010006 d0cab13b-f2df-4901-97cd-7a8556661410_wxs_gdc_realn.bam 29686913321 BAM harmonized CPTAC3 a12611f3-1505-4479-b57a-961a4ed7b069 b6d0be0a3bba92b637d381ce10df7e69 { 'aliquot_tag': 'ALQ_5e9dd1b9', 'gdc_sample_type': 'Primary Tumor' } +C3L-04971.MethArray.Green.Tpb C3L-04971 AML Methylation Array tumor_peripheral_blood CPT0339330002 205987780101_R05C01_Grn.idat 13677887 IDAT Green NA CPTAC3 d91ec359-84fd-4dc6-8f19-4856e62dd40a c8303bda4e4fe1508361bfab9c89757f { 'aliquot_tag': 'ALQ_1567486a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04971.MethArray.Red.Tpb C3L-04971 AML Methylation Array tumor_peripheral_blood CPT0339330002 205987780101_R05C01_Red.idat 13677887 IDAT Red NA CPTAC3 5c0e76d6-072a-4936-accd-6b6c8c1e3039 79f900994aa6e43f96ce28ba887bdec6 { 'aliquot_tag': 'ALQ_1567486a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04971.miRNA-Seq.Tpb C3L-04971 AML miRNA-Seq tumor_peripheral_blood CPT0339340002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCCCGA_S19_L001_R1_001.unaln.bam 241802022 BAM unaligned CPTAC3 3c1fae86-3aa3-4cc6-89d3-1def56b9c932 123fc7250e667798782131fc2f0e16b0 { 'aliquot_tag': 'ALQ_a747947a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-04971.RNA-Seq.R1_L006.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R1_001.fastq.gz 4148351491 FASTQ R1_L006 unaligned CPTAC3 d99c1f34-fb81-4eb9-a7cd-6633b8503c48 07d98f8b7cd9d0b5fd9eeb8b02aeffd7 { 'aliquot_tag': 'ALQ_a747947a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-04971.RNA-Seq.R2_L006.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R2_001.fastq.gz 4540860364 FASTQ R2_L006 unaligned CPTAC3 b75f533d-4b00-472f-840b-75cd60a4db83 249cfc89d3ada95052b2a46ac0eec5ee { 'aliquot_tag': 'ALQ_a747947a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04971.miRNA-Seq.Tpb.hg38 C3L-04971 AML miRNA-Seq tumor_peripheral_blood CPT0339340002 0b45deac-fcc3-4fa1-9f1f-a845307e57d9_mirnaseq_gdc_realn.bam 259184628 BAM harmonized CPTAC3 fa5e86ae-3ca0-4199-87a9-abdbd9c12975 405747118c01e05036a89769f6c0d6ab { 'aliquot_tag': 'ALQ_a747947a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04971.RNA-Seq.chimeric.Tpb.hg38 C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 08ed2d29-d93b-4bca-9ec6-f52b83c4585c.rna_seq.chimeric.gdc_realn.bam 618559213 BAM chimeric harmonized CPTAC3 e594709a-947d-4563-a0de-b933597ee5aa 690b424d79adaba770751cfd2b6db51b { 'aliquot_tag': 'ALQ_a747947a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04971.RNA-Seq.genomic.Tpb.hg38 C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 08ed2d29-d93b-4bca-9ec6-f52b83c4585c.rna_seq.genomic.gdc_realn.bam 9739276635 BAM genomic harmonized CPTAC3 60b3e86c-c959-4c54-9923-c81ce857a58c 0d57cff883b9fe457eb7aeb08fb0de83 { 'aliquot_tag': 'ALQ_a747947a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04971.RNA-Seq.R1_L006.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R1_001.fastq.gz 4148351491 FASTQ R1_L006 unaligned CPTAC3 d99c1f34-fb81-4eb9-a7cd-6633b8503c48 07d98f8b7cd9d0b5fd9eeb8b02aeffd7 { 'aliquot_tag': 'ALQ_a747947a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L006' } +C3L-04971.RNA-Seq.R2_L006.Tpb C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 211207_UNC32-K00270_0305_AHMW37BBXY_AATCCGGA-CTACAGTT_S21_L006_R2_001.fastq.gz 4540860364 FASTQ R2_L006 unaligned CPTAC3 b75f533d-4b00-472f-840b-75cd60a4db83 249cfc89d3ada95052b2a46ac0eec5ee { 'aliquot_tag': 'ALQ_a747947a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L006' } +C3L-04971.RNA-Seq.transcriptome.Tpb.hg38 C3L-04971 AML RNA-Seq tumor_peripheral_blood CPT0339340002 08ed2d29-d93b-4bca-9ec6-f52b83c4585c.rna_seq.transcriptome.gdc_realn.bam 7496675086 BAM transcriptome harmonized CPTAC3 81c7e221-82bc-4c63-8e16-ec184010b494 3e32481a72f9b92059d9c0289372c655 { 'aliquot_tag': 'ALQ_a747947a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04971.WGS.Tpb C3L-04971 AML WGS tumor_peripheral_blood CPT0339330002 CPT0339330002.WholeGenome.RP-2158.bam 45545990165 BAM aligned CPTAC3 85b80bc0-77af-412c-80a7-e6044d650596 2a76cbb77d0fda0b54105980e656e7b1 { 'aliquot_tag': 'ALQ_1567486a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04971.WGS.Tpb.hg38 C3L-04971 AML WGS tumor_peripheral_blood CPT0339330002 d5f7901c-319d-49a5-b8f2-4053c2ba66dd_wgs_gdc_realn.bam 396291947475 BAM harmonized CPTAC3 6119cb98-af0c-48a7-836b-2751bfee338c 66ed236c55d0b8c9e708f4d988d390c6 { 'aliquot_tag': 'ALQ_1567486a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04971.WXS.Nbc C3L-04971 AML WXS buccal_normal CPT0343350004 CPT0343350004.WholeExome.RP-1303.bam 28793076892 BAM aligned CPTAC3 a161b7c2-54fc-45c6-8b80-1643628529cc 9c2b31e5fc40a82fd863b505c0789fe3 { 'aliquot_tag': 'ALQ_ddf14ea8', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04971.WXS.Nbc.hg38 C3L-04971 AML WXS buccal_normal CPT0343350004 43f033f3-42d5-45ea-b9d2-4e9fb45232c4_wxs_gdc_realn.bam 40092493994 BAM harmonized CPTAC3 8af4c3fd-04fd-4e76-bfee-67bb4a62d215 c5d26247def12b3509219b7ac8e19ba3 { 'aliquot_tag': 'ALQ_ddf14ea8', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04971.WXS.Tpb C3L-04971 AML WXS tumor_peripheral_blood CPT0339330002 CPT0339330002.WholeExome.RP-1303.bam 34364846930 BAM aligned CPTAC3 b997890d-3f4f-42c1-b004-277e5a49c9f0 b877f3a4efdf075848c772aadfbfac67 { 'aliquot_tag': 'ALQ_1567486a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-04976.RNA-Seq.R1_L007.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R1_001.fastq.gz 3833175431 FASTQ R1_L007 unaligned CPTAC3 b086bac9-f82e-4f92-acb5-4ec2e8f3e1e2 12397874d652455e4c389a6b820491d9 { 'aliquot_tag': 'ALQ_187fc1b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-04976.RNA-Seq.R2_L007.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R2_001.fastq.gz 4120847331 FASTQ R2_L007 unaligned CPTAC3 05cced7e-a63b-4b94-a784-1c918fb8fa37 e3c4042158cb0ae18db814e8d46bae9f { 'aliquot_tag': 'ALQ_187fc1b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04971.WXS.Tpb.hg38 C3L-04971 AML WXS tumor_peripheral_blood CPT0339330002 d5f7901c-319d-49a5-b8f2-4053c2ba66dd_wxs_gdc_realn.bam 48003722608 BAM harmonized CPTAC3 7b8cbab0-baaf-420c-8328-9ed0c99b09ea bb29a64a8d9b27518e83909390d74fee { 'aliquot_tag': 'ALQ_1567486a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04976.MethArray.Green.Tpb C3L-04976 AML Methylation Array tumor_peripheral_blood CPT0340440002 205987780101_R04C01_Grn.idat 13677888 IDAT Green NA CPTAC3 8b487bc9-bb65-4c0a-bef0-9e115ce26b02 11d4467948c09ebd66e171fa63254562 { 'aliquot_tag': 'ALQ_251fe808', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04976.MethArray.Red.Tpb C3L-04976 AML Methylation Array tumor_peripheral_blood CPT0340440002 205987780101_R04C01_Red.idat 13677888 IDAT Red NA CPTAC3 20abb0c4-846b-4d2b-bc58-05d7045482a6 c03e89eef804ba16a57babac4c5c572a { 'aliquot_tag': 'ALQ_251fe808', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04976.miRNA-Seq.Tpb C3L-04976 AML miRNA-Seq tumor_peripheral_blood CPT0340450002 220505_UNC32-K00270_0319_AHMV2KBBXY_CATGGC_S9_L004_R1_001.unaln.bam 197974102 BAM unaligned CPTAC3 4bc495d3-921d-44ad-9cc2-607be6db51d0 1c6e3d6baff267b053bc64bc29581d33 { 'aliquot_tag': 'ALQ_187fc1b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04976.RNA-Seq.chimeric.Tpb.hg38 C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 a3ed3de5-f808-4b1c-bdd6-44db47c9b55a.rna_seq.chimeric.gdc_realn.bam 438798821 BAM chimeric harmonized CPTAC3 ff36c299-c0fc-4f2e-a1b0-ed692460a4d0 2ab1eb2a1b7b42405e883bab30394064 { 'aliquot_tag': 'ALQ_187fc1b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04976.RNA-Seq.genomic.Tpb.hg38 C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 a3ed3de5-f808-4b1c-bdd6-44db47c9b55a.rna_seq.genomic.gdc_realn.bam 7734574249 BAM genomic harmonized CPTAC3 cf590f02-6863-4801-99e6-8f7f57f8eeec 9c39b9c1c19ab22b73d555ac1cd56d81 { 'aliquot_tag': 'ALQ_187fc1b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04976.RNA-Seq.R1_L007.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R1_001.fastq.gz 3833175431 FASTQ R1_L007 unaligned CPTAC3 b086bac9-f82e-4f92-acb5-4ec2e8f3e1e2 12397874d652455e4c389a6b820491d9 { 'aliquot_tag': 'ALQ_187fc1b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L007' } +C3L-04976.RNA-Seq.R2_L007.Tpb C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 211207_UNC32-K00270_0305_AHMW37BBXY_GCACGGAC-GTCTCGCA_S27_L007_R2_001.fastq.gz 4120847331 FASTQ R2_L007 unaligned CPTAC3 05cced7e-a63b-4b94-a784-1c918fb8fa37 e3c4042158cb0ae18db814e8d46bae9f { 'aliquot_tag': 'ALQ_187fc1b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L007' } +C3L-04976.RNA-Seq.transcriptome.Tpb.hg38 C3L-04976 AML RNA-Seq tumor_peripheral_blood CPT0340450002 a3ed3de5-f808-4b1c-bdd6-44db47c9b55a.rna_seq.transcriptome.gdc_realn.bam 9202305720 BAM transcriptome harmonized CPTAC3 8646852d-f933-4eae-a230-ecd46b73c15e 5e6b938d3dfc94f4e13ab9bc2fff6ee1 { 'aliquot_tag': 'ALQ_187fc1b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04976.WGS.Tpb C3L-04976 AML WGS tumor_peripheral_blood CPT0340440002 CPT0340440002.WholeGenome.RP-2158.bam 48842235022 BAM aligned CPTAC3 d738a572-2f8d-458d-8e89-f96782ff4550 6ee412053e29bb290a3e259c1c599a6d { 'aliquot_tag': 'ALQ_251fe808', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04976.WGS.Tpb.hg38 C3L-04976 AML WGS tumor_peripheral_blood CPT0340440002 688a7f1f-fd4e-48b0-8f6b-efa006ad465a_wgs_gdc_realn.bam 147881432523 BAM harmonized CPTAC3 21cb1a80-0867-4877-8198-f3c83b1710cb 706f515abb5c7b4551189e5fe4893676 { 'aliquot_tag': 'ALQ_251fe808', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-04976.WXS.Nbc C3L-04976 AML WXS buccal_normal CPT0340410004 CPT0340410004.WholeExome.RP-1303.bam 18430426422 BAM aligned CPTAC3 55a21e1d-93ba-4396-ac8b-b732c9e7bd18 d7186dd855d6471eb2093fb2e22a303a { 'aliquot_tag': 'ALQ_49cc24d', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-04976.WXS.Nbc.hg38 C3L-04976 AML WXS buccal_normal CPT0340410004 b3d4bb03-7ba4-4dcf-8598-4359592394a2_wxs_gdc_realn.bam 25647276561 BAM harmonized CPTAC3 c7f73644-7904-417e-a93c-ce6d8158663c 8748c21c2de7e7f29a2317dd3ed12eb6 { 'aliquot_tag': 'ALQ_49cc24d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-04976.WXS.Tpb C3L-04976 AML WXS tumor_peripheral_blood CPT0340440002 CPT0340440002.WholeExome.RP-1303.bam 27947904385 BAM aligned CPTAC3 41225e8c-849b-4ed4-8890-51871a404702 35418eecc6fee933bd1a1d58ebcd6063 { 'aliquot_tag': 'ALQ_251fe808', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-04976.WXS.Tpb.hg38 C3L-04976 AML WXS tumor_peripheral_blood CPT0340440002 688a7f1f-fd4e-48b0-8f6b-efa006ad465a_wxs_gdc_realn.bam 38770748836 BAM harmonized CPTAC3 7a88bcb3-8db3-4533-a9ff-45f6c13a6a73 2bfa50239ca30893e18f7095e7e00587 { 'aliquot_tag': 'ALQ_251fe808', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05020.MethArray.Green.A C3L-05020 LSCC Methylation Array tissue_normal CPT0262510006 204367490084_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 a921e42c-1f0e-4c21-9a76-34ca2d235422 4b86be7e157ed4dce027acd6ce132251 { 'aliquot_tag': 'ALQ_e30f72d3', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05020.MethArray.Green.T C3L-05020 LSCC Methylation Array tumor CPT0262460006 204372030074_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 77f14ecd-ed1e-41af-b306-e9d589865aba cf59448bbe5a213f000f6cea2e7c2257 { 'aliquot_tag': 'ALQ_9a737d66', 'gdc_sample_type': 'Primary Tumor' } C3L-05020.MethArray.Red.A C3L-05020 LSCC Methylation Array tissue_normal CPT0262510006 204367490084_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 1e3bf5c0-86ca-4133-b5ec-f335899c6b76 b76920e92379d6a83ce976102f03d636 { 'aliquot_tag': 'ALQ_e30f72d3', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -16749,16 +17734,16 @@ C3L-05020.miRNA-Seq.A C3L-05020 LSCC miRNA-Seq tissue_normal CPT0262510009 20051 C3L-05020.miRNA-Seq.A.hg38 C3L-05020 LSCC miRNA-Seq tissue_normal CPT0262510009 02449727-14fd-4a39-8708-c8022e46721e_mirnaseq_gdc_realn.bam 274033428 BAM harmonized CPTAC3 e89744a0-b737-43fc-8e8b-7df52dbca536 4440dbe049845a173d25ac2ecdb4bb9e { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05020.miRNA-Seq.T C3L-05020 LSCC miRNA-Seq tumor CPT0262460009 200224_UNC31-K00269_0267_AHC722BBXY_ATGTCA_S15_L008_R1_001.unaln.bam 245912467 BAM unaligned CPTAC3 b208fcf2-0c9d-4e9f-a140-c00c3b7d41f3 0ca1c6d89998bd4ae64b1bb8a6bc62f5 { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor' } C3L-05020.miRNA-Seq.T.hg38 C3L-05020 LSCC miRNA-Seq tumor CPT0262460009 a55ce9af-0f05-4d9e-b825-bf6e6168e05f_mirnaseq_gdc_realn.bam 268517353 BAM harmonized CPTAC3 3739804e-62af-4ba0-b474-d93def2206f9 17ee24d5e53a71544356021a664dad70 { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-05020.RNA-Seq.chimeric.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 5649de41-0011-48f1-bb04-a8e9baebf864.rna_seq.chimeric.gdc_realn.bam 25807919 BAM chimeric harmonized CPTAC3 62e54d1c-cc0f-4bff-bbfc-0dce26ba29f2 78e8c367f66dee64b28f74f6536db1fe { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05020.RNA-Seq.chimeric.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 cd5764ed-1bdd-484f-bb7b-e2a6016fa378.rna_seq.chimeric.gdc_realn.bam 31059111 BAM chimeric harmonized CPTAC3 1d272f4e-a92d-4d73-b7b4-0b927957569b 1c1426c4afb409674205b53dbb2d8b22 { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-05020.RNA-Seq.genomic.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 5649de41-0011-48f1-bb04-a8e9baebf864.rna_seq.genomic.gdc_realn.bam 6781999951 BAM genomic harmonized CPTAC3 93cf03b6-b5c8-4d5c-8a1a-11874260d568 fdd0239094a8063f6429b2c6ea83f203 { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05020.RNA-Seq.genomic.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 cd5764ed-1bdd-484f-bb7b-e2a6016fa378.rna_seq.genomic.gdc_realn.bam 6984714673 BAM genomic harmonized CPTAC3 5b86d125-35cc-4f61-94d8-063200b1b729 86e3daf189f3e744f04d994625f5bf24 { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-05020.RNA-Seq.R1_L004.T C3L-05020 LSCC RNA-Seq tumor CPT0262460009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L004_R1_001.fastq.gz 3458601880 FASTQ R1_L004 unaligned CPTAC3 f56cde44-a302-4e05-af29-99b841a4c531 efe0682d3738cdf0e1d10dbff797f030 { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-05020.RNA-Seq.R1_L005.A C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGACTTGG-CGCAGACG_S3_L005_R1_001.fastq.gz 3405898536 FASTQ R1_L005 unaligned CPTAC3 f5ab75f7-4feb-46d2-ac3e-52984334b00e 35f8b2d0af872f72a2c41c4c9686d309 { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05020.RNA-Seq.R2_L004.T C3L-05020 LSCC RNA-Seq tumor CPT0262460009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L004_R2_001.fastq.gz 3703763631 FASTQ R2_L004 unaligned CPTAC3 b3c3cc55-f3ce-4488-9edd-0e3451544107 1ba52d5c26c42623e3e670b3e51de1d3 { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor' } -C3L-05020.RNA-Seq.R2_L005.A C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGACTTGG-CGCAGACG_S3_L005_R2_001.fastq.gz 3610606327 FASTQ R2_L005 unaligned CPTAC3 9d873937-00f9-4770-8b8e-71354acc37bd b708013e51a9c2e907308ac88ab2d832 { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05020.RNA-Seq.transcriptome.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 5649de41-0011-48f1-bb04-a8e9baebf864.rna_seq.transcriptome.gdc_realn.bam 7429423290 BAM transcriptome harmonized CPTAC3 f83a1181-53bd-459f-991b-9d58d723c6ed fb826970f161370ae0b290b034a76091 { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05020.RNA-Seq.transcriptome.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 cd5764ed-1bdd-484f-bb7b-e2a6016fa378.rna_seq.transcriptome.gdc_realn.bam 8626498418 BAM transcriptome harmonized CPTAC3 293620d0-b68b-4458-8671-37fe570ae76c ec657ed32148ac6d56e77e5c4f3cf9b5 { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor' } +C3L-05020.RNA-Seq.chimeric.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 1b62f4ca-82bf-46a8-97f8-d1e1d8c7cb52.rna_seq.chimeric.gdc_realn.bam 25787460 BAM chimeric harmonized CPTAC3 b165aab7-2082-47b5-a751-532d5580293f 8d53f7f048a2136885cc3a35978b8aa6 { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05020.RNA-Seq.chimeric.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 aaf5838a-24cb-474a-bf27-13fd47d76251.rna_seq.chimeric.gdc_realn.bam 31046488 BAM chimeric harmonized CPTAC3 e60ea571-c05a-4f12-bee5-6dc3a339fd96 3be5013f05fd382619787d441596205e { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor' } +C3L-05020.RNA-Seq.genomic.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 1b62f4ca-82bf-46a8-97f8-d1e1d8c7cb52.rna_seq.genomic.gdc_realn.bam 6782961881 BAM genomic harmonized CPTAC3 3a6ec90f-6e44-43bf-bbb1-a6f2b0dadba0 bf15383ea9283d295ab724d7118d4e8b { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05020.RNA-Seq.genomic.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 aaf5838a-24cb-474a-bf27-13fd47d76251.rna_seq.genomic.gdc_realn.bam 6986430641 BAM genomic harmonized CPTAC3 857f53b8-1fd4-4350-8988-2c1eb792a1c0 ca9aa679a48522e11062359f96513ffb { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor' } +C3L-05020.RNA-Seq.R1_L004.T C3L-05020 LSCC RNA-Seq tumor CPT0262460009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L004_R1_001.fastq.gz 3458601880 FASTQ R1_L004 unaligned CPTAC3 f56cde44-a302-4e05-af29-99b841a4c531 efe0682d3738cdf0e1d10dbff797f030 { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-05020.RNA-Seq.R1_L005.A C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGACTTGG-CGCAGACG_S3_L005_R1_001.fastq.gz 3405898536 FASTQ R1_L005 unaligned CPTAC3 f5ab75f7-4feb-46d2-ac3e-52984334b00e 35f8b2d0af872f72a2c41c4c9686d309 { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-05020.RNA-Seq.R2_L004.T C3L-05020 LSCC RNA-Seq tumor CPT0262460009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGCTTAAG-TCGTGACC_S15_L004_R2_001.fastq.gz 3703763631 FASTQ R2_L004 unaligned CPTAC3 b3c3cc55-f3ce-4488-9edd-0e3451544107 1ba52d5c26c42623e3e670b3e51de1d3 { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-05020.RNA-Seq.R2_L005.A C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 200505_UNC32-K00270_0245_AHH5FVBBXY_GGACTTGG-CGCAGACG_S3_L005_R2_001.fastq.gz 3610606327 FASTQ R2_L005 unaligned CPTAC3 9d873937-00f9-4770-8b8e-71354acc37bd b708013e51a9c2e907308ac88ab2d832 { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-05020.RNA-Seq.transcriptome.A.hg38 C3L-05020 LSCC RNA-Seq tissue_normal CPT0262510009 1b62f4ca-82bf-46a8-97f8-d1e1d8c7cb52.rna_seq.transcriptome.gdc_realn.bam 8492217139 BAM transcriptome harmonized CPTAC3 f96397e2-efd6-453a-a158-2372490c11bf 343217b673ad92a7a917f6c08dbb054f { 'aliquot_tag': 'ALQ_73b06f42', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05020.RNA-Seq.transcriptome.T.hg38 C3L-05020 LSCC RNA-Seq tumor CPT0262460009 aaf5838a-24cb-474a-bf27-13fd47d76251.rna_seq.transcriptome.gdc_realn.bam 9797103851 BAM transcriptome harmonized CPTAC3 b2a6f468-26c6-4eac-8a19-c3ba38086233 ceb639f7d7132f28d297f0590a3afcb9 { 'aliquot_tag': 'ALQ_acc60f7', 'gdc_sample_type': 'Primary Tumor' } C3L-05020.WGS.N C3L-05020 LSCC WGS blood_normal CPT0263780002 CPT0263780002.WholeGenome.RP-2158.bam 26323199236 BAM aligned CPTAC3 664050ec-fee9-42dc-8903-5fe8c6b6a1d8 8dc7a90590477bfa4ff54f863074de96 { 'aliquot_tag': 'ALQ_2cd7e04', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05020.WGS.N.hg38 C3L-05020 LSCC WGS blood_normal CPT0263780002 9a5e7de2-a3e2-4837-b944-c4f71db5be2f_wgs_gdc_realn.bam 77638470623 BAM harmonized CPTAC3 82895603-0b17-4f96-b192-987c98e5be51 18656630f9f000e90070deb7a8472cb9 { 'aliquot_tag': 'ALQ_2cd7e04', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05020.WGS.T C3L-05020 LSCC WGS tumor CPT0262460006 CPT0262460006.WholeGenome.RP-2158.bam 25718538719 BAM aligned CPTAC3 048fff88-b8b1-43fd-9df5-0c9b13db65fe f470042fc7cd3ee5efcfe1c783b4d61c { 'aliquot_tag': 'ALQ_9a737d66', 'gdc_sample_type': 'Primary Tumor' } @@ -16777,16 +17762,16 @@ C3L-05022.miRNA-Seq.A C3L-05022 LSCC miRNA-Seq tissue_normal CPT0275010009 20051 C3L-05022.miRNA-Seq.A.hg38 C3L-05022 LSCC miRNA-Seq tissue_normal CPT0275010009 c4de58a1-0e14-4ee8-9ba1-390f28b2d53a_mirnaseq_gdc_realn.bam 289901167 BAM harmonized CPTAC3 d97eacc0-62ac-476c-a434-c61eede0644f 5edaaf5c905770c443c30bbcf9d322cb { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05022.miRNA-Seq.T C3L-05022 LSCC miRNA-Seq tumor CPT0274960009 200224_UNC31-K00269_0267_AHC722BBXY_CCGTCC_S16_L008_R1_001.unaln.bam 281311755 BAM unaligned CPTAC3 f1127c44-595f-4e4a-afc6-428f024acca2 5fc790a1da3217e531014e8f4fc1e153 { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor' } C3L-05022.miRNA-Seq.T.hg38 C3L-05022 LSCC miRNA-Seq tumor CPT0274960009 42811ed2-abb9-4d04-a0f4-cacb17339e59_mirnaseq_gdc_realn.bam 310163774 BAM harmonized CPTAC3 b2f46963-d645-458b-8d46-657b0a30a7a7 6c64e6cc608cb60dbf44e7888d6349aa { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor' } -C3L-05022.RNA-Seq.chimeric.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 98369ec4-a8d3-4241-93d3-8e007b2f3530.rna_seq.chimeric.gdc_realn.bam 30872009 BAM chimeric harmonized CPTAC3 4547a641-3ee7-472d-931a-58bc307eba6b 0c19bd2a42cb3651b73a02d9e0f88afd { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05022.RNA-Seq.chimeric.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 702ea607-1cab-49f6-a4c7-912ee5198b6e.rna_seq.chimeric.gdc_realn.bam 43538254 BAM chimeric harmonized CPTAC3 33e3a09a-c49b-41f5-aede-4e04c0313e7a 5b837f1e1d033b0a29106d25a1f34874 { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor' } -C3L-05022.RNA-Seq.genomic.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 98369ec4-a8d3-4241-93d3-8e007b2f3530.rna_seq.genomic.gdc_realn.bam 7740245840 BAM genomic harmonized CPTAC3 934d39c1-865a-442b-89b9-a3c79ece2f21 24f935dd742ff8b8a57093f70f6e6be8 { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05022.RNA-Seq.genomic.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 702ea607-1cab-49f6-a4c7-912ee5198b6e.rna_seq.genomic.gdc_realn.bam 9065117279 BAM genomic harmonized CPTAC3 f5a1ecd9-1f4b-48fe-a90c-7fce4314f7c6 3270c9a3952e1b9124696acace66bc0e { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor' } -C3L-05022.RNA-Seq.R1_L004.T C3L-05022 LSCC RNA-Seq tumor CPT0274960009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L004_R1_001.fastq.gz 4451704090 FASTQ R1_L004 unaligned CPTAC3 fa0e4fbb-9a10-4dca-9e54-ae9915a506ca e14b17bb00f8114f809ee82570f9a47d { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor' } -C3L-05022.RNA-Seq.R1_L005.A C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 200505_UNC32-K00270_0245_AHH5FVBBXY_AAGTCCAA-TATGAGTA_S4_L005_R1_001.fastq.gz 3958739243 FASTQ R1_L005 unaligned CPTAC3 bef01d6f-1e3d-4082-8717-e9efcf6430f7 c5c360a9adbd5202b6001eab443588d1 { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05022.RNA-Seq.R2_L004.T C3L-05022 LSCC RNA-Seq tumor CPT0274960009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L004_R2_001.fastq.gz 4874032343 FASTQ R2_L004 unaligned CPTAC3 e3d4a9ce-c37c-4578-9eca-9d6719f10efa 862b2812a1ec86b1eb25073f32c14f17 { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor' } -C3L-05022.RNA-Seq.R2_L005.A C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 200505_UNC32-K00270_0245_AHH5FVBBXY_AAGTCCAA-TATGAGTA_S4_L005_R2_001.fastq.gz 4207828548 FASTQ R2_L005 unaligned CPTAC3 9a2e01f8-b26f-494f-b0bc-03d622bdf34e 160665a43a1b34320f3f02809ef4f62f { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05022.RNA-Seq.transcriptome.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 98369ec4-a8d3-4241-93d3-8e007b2f3530.rna_seq.transcriptome.gdc_realn.bam 8935594809 BAM transcriptome harmonized CPTAC3 c61eb74a-0750-4419-b029-c4286102257f 9fa457145a43a6358cced6393afeb0e7 { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05022.RNA-Seq.transcriptome.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 702ea607-1cab-49f6-a4c7-912ee5198b6e.rna_seq.transcriptome.gdc_realn.bam 10638650492 BAM transcriptome harmonized CPTAC3 cace1524-6c68-4988-bc5f-f72855465c49 bde4124e468cb1cde3b9e7d609f5fe47 { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor' } +C3L-05022.RNA-Seq.chimeric.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 422e232e-f038-4961-bf52-39435402136c.rna_seq.chimeric.gdc_realn.bam 30850969 BAM chimeric harmonized CPTAC3 45408007-93bd-427e-9c1e-c6cb21037ea1 4b9264ed73821a3a5730b251ef39eb9d { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05022.RNA-Seq.chimeric.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 3765d84e-4a60-4c74-bc31-0273df8f8872.rna_seq.chimeric.gdc_realn.bam 43546465 BAM chimeric harmonized CPTAC3 34c761b5-63f9-438c-bbf9-987431d56928 4ee478107aa2020298476993710a20ea { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor' } +C3L-05022.RNA-Seq.genomic.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 422e232e-f038-4961-bf52-39435402136c.rna_seq.genomic.gdc_realn.bam 7741440304 BAM genomic harmonized CPTAC3 c43d1b44-2e67-4dca-9502-e88b1fcd60de abc4b8ecfe4d5409664a53d3ebcd9a33 { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05022.RNA-Seq.genomic.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 3765d84e-4a60-4c74-bc31-0273df8f8872.rna_seq.genomic.gdc_realn.bam 9066957871 BAM genomic harmonized CPTAC3 c398c2c4-c563-4a5b-98e0-8278b3822428 a065b8fc7248ffb12d59131d17124315 { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor' } +C3L-05022.RNA-Seq.R1_L004.T C3L-05022 LSCC RNA-Seq tumor CPT0274960009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L004_R1_001.fastq.gz 4451704090 FASTQ R1_L004 unaligned CPTAC3 fa0e4fbb-9a10-4dca-9e54-ae9915a506ca e14b17bb00f8114f809ee82570f9a47d { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-05022.RNA-Seq.R1_L005.A C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 200505_UNC32-K00270_0245_AHH5FVBBXY_AAGTCCAA-TATGAGTA_S4_L005_R1_001.fastq.gz 3958739243 FASTQ R1_L005 unaligned CPTAC3 bef01d6f-1e3d-4082-8717-e9efcf6430f7 c5c360a9adbd5202b6001eab443588d1 { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-05022.RNA-Seq.R2_L004.T C3L-05022 LSCC RNA-Seq tumor CPT0274960009 200505_UNC32-K00270_0245_AHH5FVBBXY_AATCCGGA-CTACAGTT_S16_L004_R2_001.fastq.gz 4874032343 FASTQ R2_L004 unaligned CPTAC3 e3d4a9ce-c37c-4578-9eca-9d6719f10efa 862b2812a1ec86b1eb25073f32c14f17 { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-05022.RNA-Seq.R2_L005.A C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 200505_UNC32-K00270_0245_AHH5FVBBXY_AAGTCCAA-TATGAGTA_S4_L005_R2_001.fastq.gz 4207828548 FASTQ R2_L005 unaligned CPTAC3 9a2e01f8-b26f-494f-b0bc-03d622bdf34e 160665a43a1b34320f3f02809ef4f62f { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-05022.RNA-Seq.transcriptome.A.hg38 C3L-05022 LSCC RNA-Seq tissue_normal CPT0275010009 422e232e-f038-4961-bf52-39435402136c.rna_seq.transcriptome.gdc_realn.bam 10220446451 BAM transcriptome harmonized CPTAC3 38d177e8-b149-4936-b6e0-144bd1cba2e7 0cc336335ca4fcf39b27ed6c22789303 { 'aliquot_tag': 'ALQ_2a70c0e1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05022.RNA-Seq.transcriptome.T.hg38 C3L-05022 LSCC RNA-Seq tumor CPT0274960009 3765d84e-4a60-4c74-bc31-0273df8f8872.rna_seq.transcriptome.gdc_realn.bam 12018150526 BAM transcriptome harmonized CPTAC3 f8b25697-7416-4ece-ac7f-8bf1755df2fd 2d409bba5f8dd2ee6b1c422b30364941 { 'aliquot_tag': 'ALQ_1928468d', 'gdc_sample_type': 'Primary Tumor' } C3L-05022.WGS.N C3L-05022 LSCC WGS blood_normal CPT0273480002 CPT0273480002.WholeGenome.RP-2158.bam 24664061553 BAM aligned CPTAC3 c6195cca-32d9-4180-af27-6ed4deeb828d b105d1bd51dbfb280b3e28f318d943b9 { 'aliquot_tag': 'ALQ_48f30c34', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05022.WGS.N.hg38 C3L-05022 LSCC WGS blood_normal CPT0273480002 bfb047a9-b14c-4ede-9c1b-79978ee288f4_wgs_gdc_realn.bam 73737561516 BAM harmonized CPTAC3 e06ef31f-a018-4db4-9f1b-b160bd3d0533 c4d45defcf1c2f292578dc7830484361 { 'aliquot_tag': 'ALQ_48f30c34', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05022.WGS.T C3L-05022 LSCC WGS tumor CPT0274960006 CPT0274960006.WholeGenome.RP-2158.bam 30134145444 BAM aligned CPTAC3 d7dfe5fa-ec4f-4075-aaed-9e3a7d3d85e8 0c3688c2ed197eb04e4a4e2a32a40798 { 'aliquot_tag': 'ALQ_89975b1c', 'gdc_sample_type': 'Primary Tumor' } @@ -16798,8 +17783,11 @@ C3L-05022.WXS.N C3L-05022 LSCC WXS blood_normal CPT0273480002 CPT0273480002.Whol C3L-05022.WXS.N.hg38 C3L-05022 LSCC WXS blood_normal CPT0273480002 bfb047a9-b14c-4ede-9c1b-79978ee288f4_wxs_gdc_realn.bam 51869172741 BAM harmonized CPTAC3 5375bbe6-ca93-44ce-b9b3-581538a8bdc8 e56a7826cf6322fe104670d3f0c115ef { 'aliquot_tag': 'ALQ_48f30c34', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05022.WXS.T C3L-05022 LSCC WXS tumor CPT0274960006 CPT0274960006.WholeExome.RP-1303.bam 25934422470 BAM aligned CPTAC3 6317a479-727c-48bc-a913-dea3d6c7f2fe 5d180ff0ba35aa18e3b4279e8ca552bd { 'aliquot_tag': 'ALQ_89975b1c', 'gdc_sample_type': 'Primary Tumor' } C3L-05022.WXS.T.hg38 C3L-05022 LSCC WXS tumor CPT0274960006 b997ad0f-ce6a-4c3e-bb5b-ee806008f611_wxs_gdc_realn.bam 35376808743 BAM harmonized CPTAC3 2e26f3ad-c58f-4fbd-a872-5310601a5703 9e1a7b7a7c2cb07f67213d8794c34f83 { 'aliquot_tag': 'ALQ_89975b1c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05029.RNA-Seq.R1_.T C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 20210723_P2_F9_WB7988-plate2_S69_R1_001.fastq.gz 4726914591 FASTQ R1_ unaligned CPTAC3 50652094-7875-4c68-bc43-be6814bee6a4 cb914cccb2d5ebaeb9609f22bacb9724 { 'aliquot_tag': 'ALQ_73748e25', 'gdc_sample_type': 'Primary Tumor' } -C3L-05029.RNA-Seq.R2_.T C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 20210723_P2_F9_WB7988-plate2_S69_R2_001.fastq.gz 4865172580 FASTQ R2_ unaligned CPTAC3 109b67b9-d2c9-4e25-afa0-4f54afedeff4 1a1045471459cb779555b61173d1d2c0 { 'aliquot_tag': 'ALQ_73748e25', 'gdc_sample_type': 'Primary Tumor' } +C3L-05029.RNA-Seq.chimeric.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.chimeric.gdc_realn.bam 135221688 BAM chimeric harmonized CPTAC3 ea91672c-bfdb-4dcf-8745-cd28f0af0249 c99017f7a7f0c045855aed077fcf6c6d { 'aliquot_tag': 'ALQ_73748e25', 'gdc_sample_type': 'Primary Tumor' } +C3L-05029.RNA-Seq.genomic.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.genomic.gdc_realn.bam 8929917342 BAM genomic harmonized CPTAC3 26db7c05-6a10-4610-bd9c-68220ad6c86f 6ffbefd9c6b448c8cfffbc8ebbea085e { 'aliquot_tag': 'ALQ_73748e25', 'gdc_sample_type': 'Primary Tumor' } +C3L-05029.RNA-Seq.T C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 20210723_P2_F9_WB7988-plate2_S69_R1_001.fastq.gz 4726914591 FASTQ unaligned CPTAC3 50652094-7875-4c68-bc43-be6814bee6a4 cb914cccb2d5ebaeb9609f22bacb9724 +C3L-05029.RNA-Seq.T C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 20210723_P2_F9_WB7988-plate2_S69_R2_001.fastq.gz 4865172580 FASTQ unaligned CPTAC3 109b67b9-d2c9-4e25-afa0-4f54afedeff4 1a1045471459cb779555b61173d1d2c0 +C3L-05029.RNA-Seq.transcriptome.T.hg38 C3L-05029 HNSCC RNA-Seq tumor CPT0337440001 4179a735-cf75-4a10-a3e4-f30e6fb12ec0.rna_seq.transcriptome.gdc_realn.bam 6458944877 BAM transcriptome harmonized CPTAC3 1f2cdeaa-053f-4b6f-b722-c51f870df7c8 128cacb12622193ca445f66daadfcd12 { 'aliquot_tag': 'ALQ_73748e25', 'gdc_sample_type': 'Primary Tumor' } C3L-05145.MethArray.Green.A C3L-05145 LSCC Methylation Array tissue_normal CPT0297120006 204372030014_R05C01_Grn.idat 13677895 IDAT Green NA CPTAC3 7324aadf-49aa-4aa4-9151-81050d77d67f 7f8b65d702d1c7048f65c51462386718 { 'aliquot_tag': 'ALQ_b426771e', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05145.MethArray.Green.T C3L-05145 LSCC Methylation Array tumor CPT0296990006 204372030071_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 de2e299d-9bb3-4020-b878-b104e31cf28c e0afcb32be79e2e061df2f1293e27e7f { 'aliquot_tag': 'ALQ_89d2cfd6', 'gdc_sample_type': 'Primary Tumor' } C3L-05145.MethArray.Red.A C3L-05145 LSCC Methylation Array tissue_normal CPT0297120006 204372030014_R05C01_Red.idat 13677895 IDAT Red NA CPTAC3 ea4dcb69-047c-4206-9f4b-32b4303cf94a cd08d7ee3ff4ad3889517f6f4e2fa578 { 'aliquot_tag': 'ALQ_b426771e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -16808,16 +17796,16 @@ C3L-05145.miRNA-Seq.A C3L-05145 LSCC miRNA-Seq tissue_normal CPT0297120009 20051 C3L-05145.miRNA-Seq.A.hg38 C3L-05145 LSCC miRNA-Seq tissue_normal CPT0297120009 8da5d881-ab4a-4651-8d95-fe40477cba9c_mirnaseq_gdc_realn.bam 272620643 BAM harmonized CPTAC3 922b515e-4ed5-4e7d-b674-f181a0b295d4 a5438eeb30aa084883eb5860a77abf6a { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05145.miRNA-Seq.T C3L-05145 LSCC miRNA-Seq tumor CPT0296990009 200224_UNC31-K00269_0267_AHC722BBXY_TCATTC_S45_L007_R1_001.unaln.bam 181281986 BAM unaligned CPTAC3 ea46e1dc-656e-49ac-b425-45cb9eb93bf8 395f06eeb0f28228a157455c4095394d { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor' } C3L-05145.miRNA-Seq.T.hg38 C3L-05145 LSCC miRNA-Seq tumor CPT0296990009 906921c0-7be5-4643-80ea-064fa2eaae2f_mirnaseq_gdc_realn.bam 199968133 BAM harmonized CPTAC3 5071d4e0-4897-48eb-9f35-5e58c39f7f7b 326a44d726e5eae2e6aef7ad90b1ebd5 { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor' } -C3L-05145.RNA-Seq.chimeric.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 6069f24a-3a06-4db5-91ee-dfddf1bef305.rna_seq.chimeric.gdc_realn.bam 35278923 BAM chimeric harmonized CPTAC3 3b273489-4ea7-42e7-b433-ae221ec49ddb c14e6217f0cc21eb1dc17f07873d7950 { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05145.RNA-Seq.chimeric.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 19f05736-03d8-48b6-bb61-7463924ec56b.rna_seq.chimeric.gdc_realn.bam 29001065 BAM chimeric harmonized CPTAC3 fa99587f-7521-4e75-a222-b927d9530691 a78d8d407777c842efcbd628ab4fd3c6 { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor' } -C3L-05145.RNA-Seq.genomic.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 6069f24a-3a06-4db5-91ee-dfddf1bef305.rna_seq.genomic.gdc_realn.bam 9073166658 BAM genomic harmonized CPTAC3 16c8721f-1892-4ffa-abcc-d40513863560 4cd5f165ba2504209e9bdaa1e00f30c3 { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05145.RNA-Seq.genomic.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 19f05736-03d8-48b6-bb61-7463924ec56b.rna_seq.genomic.gdc_realn.bam 7199923007 BAM genomic harmonized CPTAC3 aa16497f-620a-4d54-af88-b4ff16c15e6f a46c5927ad559177e60807b0737ddd1b { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor' } -C3L-05145.RNA-Seq.R1_L001.A C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGTAAGT-ACTCTATG_S1_L001_R1_001.fastq.gz 4135338522 FASTQ R1_L001 unaligned CPTAC3 8bb9aec1-8ad1-4c7a-bb5c-b06d1d2e7d60 9d46ffa784c8d576d275734148a5f79f { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05145.RNA-Seq.R1_L004.T C3L-05145 LSCC RNA-Seq tumor CPT0296990009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATGGCATG-AAGGTACC_S13_L004_R1_001.fastq.gz 3402545997 FASTQ R1_L004 unaligned CPTAC3 8cc89418-7fb5-4ced-8cb0-57380227d1da 7f47a1db480b85d0aff263bf68439eb8 { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor' } -C3L-05145.RNA-Seq.R2_L001.A C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGTAAGT-ACTCTATG_S1_L001_R2_001.fastq.gz 4993363659 FASTQ R2_L001 unaligned CPTAC3 5d6ef432-bab5-4b99-98e8-c0f2290f12f7 08741edc11e248901b16d7d844089831 { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05145.RNA-Seq.R2_L004.T C3L-05145 LSCC RNA-Seq tumor CPT0296990009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATGGCATG-AAGGTACC_S13_L004_R2_001.fastq.gz 3646675574 FASTQ R2_L004 unaligned CPTAC3 5f94f5a5-fa3a-4976-972b-044ec97b853d d7329ff090c4eb86355c81e279184da1 { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor' } -C3L-05145.RNA-Seq.transcriptome.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 6069f24a-3a06-4db5-91ee-dfddf1bef305.rna_seq.transcriptome.gdc_realn.bam 9123112223 BAM transcriptome harmonized CPTAC3 44bc0da4-5369-46d5-a8bc-e048b77ce060 3b549e818d15e48129bcccb513945103 { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05145.RNA-Seq.transcriptome.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 19f05736-03d8-48b6-bb61-7463924ec56b.rna_seq.transcriptome.gdc_realn.bam 8223272205 BAM transcriptome harmonized CPTAC3 cc2e67d3-0827-4891-8893-f28d154238bd 6c167bf60a6d575dec1aac692a8654cd { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor' } +C3L-05145.RNA-Seq.chimeric.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 fc2e59c0-8706-4892-8598-6ccab3a03c2b.rna_seq.chimeric.gdc_realn.bam 35267136 BAM chimeric harmonized CPTAC3 2652ba4a-f2ad-4a77-bad1-11b9ade9c8c6 eff8cd26ce15d58aa7b56ebf641e2cb5 { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05145.RNA-Seq.chimeric.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 d203f82e-61b8-4ed4-b70e-1bf82cc1a3f2.rna_seq.chimeric.gdc_realn.bam 29043298 BAM chimeric harmonized CPTAC3 8fb4abe5-5889-41d2-8724-3925e2c6869f 3179c3a2a4eeb4c8bda2fe2f957de5d5 { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor' } +C3L-05145.RNA-Seq.genomic.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 fc2e59c0-8706-4892-8598-6ccab3a03c2b.rna_seq.genomic.gdc_realn.bam 9074733377 BAM genomic harmonized CPTAC3 2f382a4d-2a6d-4dde-b354-efed8d7539c1 afebb12c02a4d00b03aa5af38a1d909d { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05145.RNA-Seq.genomic.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 d203f82e-61b8-4ed4-b70e-1bf82cc1a3f2.rna_seq.genomic.gdc_realn.bam 7200929287 BAM genomic harmonized CPTAC3 bf813b3b-cf6d-4dfa-a856-01e84805e4a3 82e7d2f127a2974571d8cc13ffd766c0 { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor' } +C3L-05145.RNA-Seq.R1_L001.A C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGTAAGT-ACTCTATG_S1_L001_R1_001.fastq.gz 4135338522 FASTQ R1_L001 unaligned CPTAC3 8bb9aec1-8ad1-4c7a-bb5c-b06d1d2e7d60 9d46ffa784c8d576d275734148a5f79f { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-05145.RNA-Seq.R1_L004.T C3L-05145 LSCC RNA-Seq tumor CPT0296990009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATGGCATG-AAGGTACC_S13_L004_R1_001.fastq.gz 3402545997 FASTQ R1_L004 unaligned CPTAC3 8cc89418-7fb5-4ced-8cb0-57380227d1da 7f47a1db480b85d0aff263bf68439eb8 { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-05145.RNA-Seq.R2_L001.A C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGTAAGT-ACTCTATG_S1_L001_R2_001.fastq.gz 4993363659 FASTQ R2_L001 unaligned CPTAC3 5d6ef432-bab5-4b99-98e8-c0f2290f12f7 08741edc11e248901b16d7d844089831 { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-05145.RNA-Seq.R2_L004.T C3L-05145 LSCC RNA-Seq tumor CPT0296990009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATGGCATG-AAGGTACC_S13_L004_R2_001.fastq.gz 3646675574 FASTQ R2_L004 unaligned CPTAC3 5f94f5a5-fa3a-4976-972b-044ec97b853d d7329ff090c4eb86355c81e279184da1 { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-05145.RNA-Seq.transcriptome.A.hg38 C3L-05145 LSCC RNA-Seq tissue_normal CPT0297120009 fc2e59c0-8706-4892-8598-6ccab3a03c2b.rna_seq.transcriptome.gdc_realn.bam 10329963587 BAM transcriptome harmonized CPTAC3 d9c8c5ed-4b02-4665-b2b2-ff47b01d21cb e79ddca0788793baf4421817837d3c5f { 'aliquot_tag': 'ALQ_24996a8f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05145.RNA-Seq.transcriptome.T.hg38 C3L-05145 LSCC RNA-Seq tumor CPT0296990009 d203f82e-61b8-4ed4-b70e-1bf82cc1a3f2.rna_seq.transcriptome.gdc_realn.bam 9158484272 BAM transcriptome harmonized CPTAC3 a15a3f78-3810-4f22-a7f6-e1041d688374 500ab131c282793a2558aea5dd04dcc0 { 'aliquot_tag': 'ALQ_196dd247', 'gdc_sample_type': 'Primary Tumor' } C3L-05145.WGS.N C3L-05145 LSCC WGS blood_normal CPT0297190002 CPT0297190002.WholeGenome.RP-2158.bam 31177574695 BAM aligned CPTAC3 29a8d6c4-7bbd-4a4c-9cc9-5647c8d00a1d e4d12ae63dea50468bae7cffd5973723 { 'aliquot_tag': 'ALQ_c49b8216', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05145.WGS.N.hg38 C3L-05145 LSCC WGS blood_normal CPT0297190002 876141d5-19d4-4daf-9415-07d0edb645da_wgs_gdc_realn.bam 94886173994 BAM harmonized CPTAC3 13daaafc-c444-40ce-b023-af39bd2306a2 a2f023098c723f7522243e9673407b0e { 'aliquot_tag': 'ALQ_c49b8216', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05145.WGS.T C3L-05145 LSCC WGS tumor CPT0296990006 CPT0296990006.WholeGenome.RP-2158.bam 27984798543 BAM aligned CPTAC3 3490fa29-008f-44ff-b76b-fac182542f77 e63a3cf84a79dcceb0a7e817e81a1c74 { 'aliquot_tag': 'ALQ_89d2cfd6', 'gdc_sample_type': 'Primary Tumor' } @@ -16836,16 +17824,16 @@ C3L-05148.miRNA-Seq.A C3L-05148 LSCC miRNA-Seq tissue_normal CPT0278920009 20051 C3L-05148.miRNA-Seq.A.hg38 C3L-05148 LSCC miRNA-Seq tissue_normal CPT0278920009 2c676eb7-4ae1-4a16-aab9-0e3387a6e0a6_mirnaseq_gdc_realn.bam 249871930 BAM harmonized CPTAC3 665403f3-3602-4a7b-8246-7364a4ef7f6f ffc25b62166929dabaea4b21a029df2d { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05148.miRNA-Seq.T C3L-05148 LSCC miRNA-Seq tumor CPT0278900006 200224_UNC31-K00269_0267_AHC722BBXY_TGACCA_S4_L006_R1_001.unaln.bam 248400241 BAM unaligned CPTAC3 66b146b6-d8f9-4add-b0d3-361a820a18b9 89738cbaa26e83b71e986aa9d35eba8e { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor' } C3L-05148.miRNA-Seq.T.hg38 C3L-05148 LSCC miRNA-Seq tumor CPT0278900006 3e8a0b36-3a6f-4441-9c15-8dfb0977a8f6_mirnaseq_gdc_realn.bam 271787631 BAM harmonized CPTAC3 33b06b47-aa51-4fad-af81-c00e7d9dd3c7 da649d712a7d065fb64639944526342e { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor' } -C3L-05148.RNA-Seq.chimeric.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 00ee8199-e6b7-4825-b336-a645a1fc94de.rna_seq.chimeric.gdc_realn.bam 34275804 BAM chimeric harmonized CPTAC3 1b9abc85-1edd-4b97-b562-ec6fc5e054ac bdc22758f3c62f35f490766b1d1f453f { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05148.RNA-Seq.chimeric.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 ac8435eb-059a-4a71-88d6-1fcd879b36f6.rna_seq.chimeric.gdc_realn.bam 59969793 BAM chimeric harmonized CPTAC3 ac09387f-6253-4626-b44b-72add06d257b ecd36b44639f77171e2d2276815eef29 { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor' } -C3L-05148.RNA-Seq.genomic.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 00ee8199-e6b7-4825-b336-a645a1fc94de.rna_seq.genomic.gdc_realn.bam 8755867751 BAM genomic harmonized CPTAC3 f1325f40-5659-4b97-bb24-dba412b0cf01 ed5d32400e060538a55dbbe71bb2e071 { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05148.RNA-Seq.genomic.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 ac8435eb-059a-4a71-88d6-1fcd879b36f6.rna_seq.genomic.gdc_realn.bam 6361050979 BAM genomic harmonized CPTAC3 825f6ed6-8477-4341-a8d3-69fa3a7fbaf5 d4abf0c7307245a23e40b79799f8449b { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor' } -C3L-05148.RNA-Seq.R1_L005.T C3L-05148 LSCC RNA-Seq tumor CPT0278900006 200428_UNC32-K00270_0243_AHG3Y3BBXY_GGTGAACC-GCGTTGGA_S20_L005_R1_001.fastq.gz 3041948461 FASTQ R1_L005 unaligned CPTAC3 af114fd2-b8b1-48fd-bbae-965cd6ecc918 9f3fc4bc8d7d998d729ffd64b1bcc99c { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor' } -C3L-05148.RNA-Seq.R1_L008.A C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L008_R1_001.fastq.gz 4305299688 FASTQ R1_L008 unaligned CPTAC3 bb2fb91b-0a34-4ec2-ab6e-68a21aa1e3a6 036f2f2041f03d70b77e0f96de04ca72 { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05148.RNA-Seq.R2_L005.T C3L-05148 LSCC RNA-Seq tumor CPT0278900006 200428_UNC32-K00270_0243_AHG3Y3BBXY_GGTGAACC-GCGTTGGA_S20_L005_R2_001.fastq.gz 3201920741 FASTQ R2_L005 unaligned CPTAC3 c95f3058-14e1-4708-a812-b8114e516f1c 534e6d8becceee41a1beb97d3579d7a0 { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor' } -C3L-05148.RNA-Seq.R2_L008.A C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L008_R2_001.fastq.gz 4797159486 FASTQ R2_L008 unaligned CPTAC3 53a00811-67fa-4991-9b18-fa784319d987 691a5bd1d8dee588d5f3b5f2b3ee7608 { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05148.RNA-Seq.transcriptome.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 00ee8199-e6b7-4825-b336-a645a1fc94de.rna_seq.transcriptome.gdc_realn.bam 9315071405 BAM transcriptome harmonized CPTAC3 d7e20a0c-158b-4d42-8efc-a4391ba85217 b3d7468ab7dbfa7fe5f719b2342dc3e0 { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05148.RNA-Seq.transcriptome.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 ac8435eb-059a-4a71-88d6-1fcd879b36f6.rna_seq.transcriptome.gdc_realn.bam 6919547217 BAM transcriptome harmonized CPTAC3 287ec4ee-14f6-4a28-9b7d-082005e245cd 724bbd1251ea7625b5826c7a06fd9ca9 { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor' } +C3L-05148.RNA-Seq.chimeric.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 f35e73ef-a23b-48ff-911f-7d8fbc7816f8.rna_seq.chimeric.gdc_realn.bam 34259978 BAM chimeric harmonized CPTAC3 63e6403a-5849-4329-b61e-8f1aff33b5df 06fc08b7991e78abeb2d98de89df71fb { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05148.RNA-Seq.chimeric.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 40165315-8143-4e52-9f4c-5ea9ad6b9031.rna_seq.chimeric.gdc_realn.bam 59959525 BAM chimeric harmonized CPTAC3 cd80e021-0eeb-45fb-a664-477eb1112748 c29e77a9e451fe26567e058e88e0adae { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor' } +C3L-05148.RNA-Seq.genomic.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 f35e73ef-a23b-48ff-911f-7d8fbc7816f8.rna_seq.genomic.gdc_realn.bam 8757153948 BAM genomic harmonized CPTAC3 b0348e7d-8595-4db8-aed6-2aa2b55e6fd7 f1d3700797633edff76fc1e600c54a2d { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05148.RNA-Seq.genomic.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 40165315-8143-4e52-9f4c-5ea9ad6b9031.rna_seq.genomic.gdc_realn.bam 6362235313 BAM genomic harmonized CPTAC3 c58d6c8d-41e6-463e-bda3-5fa58727b0f8 2ca46730b16c641d8641bd7f15bb8816 { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor' } +C3L-05148.RNA-Seq.R1_L005.T C3L-05148 LSCC RNA-Seq tumor CPT0278900006 200428_UNC32-K00270_0243_AHG3Y3BBXY_GGTGAACC-GCGTTGGA_S20_L005_R1_001.fastq.gz 3041948461 FASTQ R1_L005 unaligned CPTAC3 af114fd2-b8b1-48fd-bbae-965cd6ecc918 9f3fc4bc8d7d998d729ffd64b1bcc99c { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-05148.RNA-Seq.R1_L008.A C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L008_R1_001.fastq.gz 4305299688 FASTQ R1_L008 unaligned CPTAC3 bb2fb91b-0a34-4ec2-ab6e-68a21aa1e3a6 036f2f2041f03d70b77e0f96de04ca72 { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-05148.RNA-Seq.R2_L005.T C3L-05148 LSCC RNA-Seq tumor CPT0278900006 200428_UNC32-K00270_0243_AHG3Y3BBXY_GGTGAACC-GCGTTGGA_S20_L005_R2_001.fastq.gz 3201920741 FASTQ R2_L005 unaligned CPTAC3 c95f3058-14e1-4708-a812-b8114e516f1c 534e6d8becceee41a1beb97d3579d7a0 { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-05148.RNA-Seq.R2_L008.A C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L008_R2_001.fastq.gz 4797159486 FASTQ R2_L008 unaligned CPTAC3 53a00811-67fa-4991-9b18-fa784319d987 691a5bd1d8dee588d5f3b5f2b3ee7608 { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-05148.RNA-Seq.transcriptome.A.hg38 C3L-05148 LSCC RNA-Seq tissue_normal CPT0278920009 f35e73ef-a23b-48ff-911f-7d8fbc7816f8.rna_seq.transcriptome.gdc_realn.bam 10580180827 BAM transcriptome harmonized CPTAC3 9d58c51d-7ea0-4e93-8cd3-e26f3497be61 38061710882e84da3a851e74f59f8a32 { 'aliquot_tag': 'ALQ_2b088a39', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05148.RNA-Seq.transcriptome.T.hg38 C3L-05148 LSCC RNA-Seq tumor CPT0278900006 40165315-8143-4e52-9f4c-5ea9ad6b9031.rna_seq.transcriptome.gdc_realn.bam 7841896510 BAM transcriptome harmonized CPTAC3 de55e494-dd8c-4fb1-9bbb-8b618d7c30a4 2c2a9abe19fecd98b1a220f872d369f0 { 'aliquot_tag': 'ALQ_c177c4c8', 'gdc_sample_type': 'Primary Tumor' } C3L-05148.WGS.N C3L-05148 LSCC WGS blood_normal CPT0278990002 CPT0278990002.WholeGenome.RP-2158.bam 29836582535 BAM aligned CPTAC3 e189b041-d5a6-4dd2-88c5-e6b4c22fc251 8f19565754ebc3a294551126f90c8a8c { 'aliquot_tag': 'ALQ_cb0a62a0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05148.WGS.N.hg38 C3L-05148 LSCC WGS blood_normal CPT0278990002 ab27f25f-6b76-4a14-be5a-4897d759a848_wgs_gdc_realn.bam 90006842825 BAM harmonized CPTAC3 99d55ea8-dde2-427d-9e42-1f122702d349 7758a2ce2fb6102798feaca5e613396b { 'aliquot_tag': 'ALQ_cb0a62a0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05148.WGS.T C3L-05148 LSCC WGS tumor CPT0278900009 CPT0278900009.WholeGenome.RP-2158.bam 23216766508 BAM aligned CPTAC3 41f7ee5c-da0b-4cae-a78e-c80e0a5255cb 98c2e3253f37ea32ec048db880eb01d3 { 'aliquot_tag': 'ALQ_51c8d959', 'gdc_sample_type': 'Primary Tumor' } @@ -16864,16 +17852,16 @@ C3L-05150.miRNA-Seq.A C3L-05150 LSCC miRNA-Seq tissue_normal CPT0277940009 20051 C3L-05150.miRNA-Seq.A.hg38 C3L-05150 LSCC miRNA-Seq tissue_normal CPT0277940009 8e930c81-fb0e-4c18-8a70-329884b362b4_mirnaseq_gdc_realn.bam 255902931 BAM harmonized CPTAC3 0c225fde-e318-4f9b-9e24-004a5f6cbe10 6fbee99c5aa0ac1fbca809cb92522711 { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05150.miRNA-Seq.T C3L-05150 LSCC miRNA-Seq tumor CPT0277920006 200224_UNC31-K00269_0267_AHC722BBXY_TTAGGC_S3_L006_R1_001.unaln.bam 203756659 BAM unaligned CPTAC3 896c25fc-775f-4a71-8aaf-7f43bde7d8c2 12d62086a1e43eeb1f7d598de89063bc { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor' } C3L-05150.miRNA-Seq.T.hg38 C3L-05150 LSCC miRNA-Seq tumor CPT0277920006 eb3ec794-3743-45fc-9767-9534255ce4b0_mirnaseq_gdc_realn.bam 223779809 BAM harmonized CPTAC3 b11d1962-fe69-4d80-bdff-62f4428944b5 cc0b35018d7d645e3a54ce86aaed08cf { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor' } -C3L-05150.RNA-Seq.chimeric.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 455ea75c-04d9-4835-82a7-7f7f4dc2c26b.rna_seq.chimeric.gdc_realn.bam 31134414 BAM chimeric harmonized CPTAC3 9d73d7d1-827f-4330-9c01-1b89b27dd9fb 1a131dd0b95c713392f42ea013227ecc { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05150.RNA-Seq.chimeric.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 49c03020-12d9-412f-8ab5-4332dbf19d16.rna_seq.chimeric.gdc_realn.bam 113761323 BAM chimeric harmonized CPTAC3 9eefd1ec-906a-4b4f-b1c3-75b492cae01e c527e8101e872012a17e72f944393927 { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor' } -C3L-05150.RNA-Seq.genomic.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 455ea75c-04d9-4835-82a7-7f7f4dc2c26b.rna_seq.genomic.gdc_realn.bam 8368383744 BAM genomic harmonized CPTAC3 b460eb2c-ca91-4cb7-b6a6-d905f8008f10 7ab62a17b417fc92050d37d837037aaf { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05150.RNA-Seq.genomic.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 49c03020-12d9-412f-8ab5-4332dbf19d16.rna_seq.genomic.gdc_realn.bam 8327386220 BAM genomic harmonized CPTAC3 118f4e71-00f2-4fc7-908b-c5b7c1f2a21f 1d7b236ef2c7b3094da6befae1e49abc { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor' } -C3L-05150.RNA-Seq.R1_L005.T C3L-05150 LSCC RNA-Seq tumor CPT0277920006 200428_UNC32-K00270_0243_AHG3Y3BBXY_AACAGGTT-ATACCAAG_S19_L005_R1_001.fastq.gz 4037503113 FASTQ R1_L005 unaligned CPTAC3 8fcf53e9-43d9-43c0-8df2-9f87b28ada7e a0602f0e4f67335c01329131a8d62daa { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor' } -C3L-05150.RNA-Seq.R1_L008.A C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L008_R1_001.fastq.gz 4023851157 FASTQ R1_L008 unaligned CPTAC3 af0a2ae8-1213-4f55-b0aa-3400671c912b 3b1264abb5e7fda32978349307ed0c50 { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05150.RNA-Seq.R2_L005.T C3L-05150 LSCC RNA-Seq tumor CPT0277920006 200428_UNC32-K00270_0243_AHG3Y3BBXY_AACAGGTT-ATACCAAG_S19_L005_R2_001.fastq.gz 4226601737 FASTQ R2_L005 unaligned CPTAC3 1183ebe9-4e91-440d-8fad-fbe57a12f3fa fa9302b4989621fc341df49d928d5cfa { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor' } -C3L-05150.RNA-Seq.R2_L008.A C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L008_R2_001.fastq.gz 4510871326 FASTQ R2_L008 unaligned CPTAC3 a45c7b13-759f-40cd-8f23-20187e682376 478f6ce516d0277437ec401d334c2615 { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05150.RNA-Seq.transcriptome.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 455ea75c-04d9-4835-82a7-7f7f4dc2c26b.rna_seq.transcriptome.gdc_realn.bam 8716342008 BAM transcriptome harmonized CPTAC3 16ea239a-1417-4eb3-a6c7-d88f81e22f2e 91a7b79923623238b7b8641af2d2b85c { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05150.RNA-Seq.transcriptome.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 49c03020-12d9-412f-8ab5-4332dbf19d16.rna_seq.transcriptome.gdc_realn.bam 9002938534 BAM transcriptome harmonized CPTAC3 8d2381b4-af87-40e7-84fc-39af678160ed 0972956d3d7798271b5917ab6dadc961 { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor' } +C3L-05150.RNA-Seq.chimeric.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 a563f74c-a3e1-488f-a945-64416a834bbd.rna_seq.chimeric.gdc_realn.bam 31128161 BAM chimeric harmonized CPTAC3 b0d8a593-ff82-45fc-8c30-529876fda70f d284eb219616f4af514b7e8f57c295c5 { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05150.RNA-Seq.chimeric.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 43d16494-9a05-4327-93db-2ac8f099d724.rna_seq.chimeric.gdc_realn.bam 113789349 BAM chimeric harmonized CPTAC3 22148f60-02f5-4b8a-87e1-84939f862ebc 312f8df2a6f4cd0d007d5f823044e230 { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor' } +C3L-05150.RNA-Seq.genomic.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 a563f74c-a3e1-488f-a945-64416a834bbd.rna_seq.genomic.gdc_realn.bam 8369842871 BAM genomic harmonized CPTAC3 00916619-d678-4776-a3ea-7699076ad762 dd30d03df49974335e2621da7635510a { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05150.RNA-Seq.genomic.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 43d16494-9a05-4327-93db-2ac8f099d724.rna_seq.genomic.gdc_realn.bam 8330445928 BAM genomic harmonized CPTAC3 b9c2e4b2-eed1-4ca0-94db-c9589949cbdb 3b6d5e54603d909a12762e4a2cad0fbb { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor' } +C3L-05150.RNA-Seq.R1_L005.T C3L-05150 LSCC RNA-Seq tumor CPT0277920006 200428_UNC32-K00270_0243_AHG3Y3BBXY_AACAGGTT-ATACCAAG_S19_L005_R1_001.fastq.gz 4037503113 FASTQ R1_L005 unaligned CPTAC3 8fcf53e9-43d9-43c0-8df2-9f87b28ada7e a0602f0e4f67335c01329131a8d62daa { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-05150.RNA-Seq.R1_L008.A C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L008_R1_001.fastq.gz 4023851157 FASTQ R1_L008 unaligned CPTAC3 af0a2ae8-1213-4f55-b0aa-3400671c912b 3b1264abb5e7fda32978349307ed0c50 { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3L-05150.RNA-Seq.R2_L005.T C3L-05150 LSCC RNA-Seq tumor CPT0277920006 200428_UNC32-K00270_0243_AHG3Y3BBXY_AACAGGTT-ATACCAAG_S19_L005_R2_001.fastq.gz 4226601737 FASTQ R2_L005 unaligned CPTAC3 1183ebe9-4e91-440d-8fad-fbe57a12f3fa fa9302b4989621fc341df49d928d5cfa { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-05150.RNA-Seq.R2_L008.A C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L008_R2_001.fastq.gz 4510871326 FASTQ R2_L008 unaligned CPTAC3 a45c7b13-759f-40cd-8f23-20187e682376 478f6ce516d0277437ec401d334c2615 { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3L-05150.RNA-Seq.transcriptome.A.hg38 C3L-05150 LSCC RNA-Seq tissue_normal CPT0277940009 a563f74c-a3e1-488f-a945-64416a834bbd.rna_seq.transcriptome.gdc_realn.bam 9909747437 BAM transcriptome harmonized CPTAC3 6da77bc8-419a-4f5a-bc7d-4485d5cdbb42 6a367c27827dcd8590b93227c40e3ecc { 'aliquot_tag': 'ALQ_52000f70', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05150.RNA-Seq.transcriptome.T.hg38 C3L-05150 LSCC RNA-Seq tumor CPT0277920006 43d16494-9a05-4327-93db-2ac8f099d724.rna_seq.transcriptome.gdc_realn.bam 10002312903 BAM transcriptome harmonized CPTAC3 fc3de59a-532d-4ae3-af14-30dc1776d005 89e09fc952cd781d41d98cd080a41892 { 'aliquot_tag': 'ALQ_4dffe741', 'gdc_sample_type': 'Primary Tumor' } C3L-05150.WGS.N C3L-05150 LSCC WGS blood_normal CPT0278010002 CPT0278010002.WholeGenome.RP-2158.bam 25019707852 BAM aligned CPTAC3 5b5988f0-d7b2-42db-9056-424626d5a763 01b3e2b6bd805492754b9ecf7bc7fcb9 { 'aliquot_tag': 'ALQ_dc7578a9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05150.WGS.N.hg38 C3L-05150 LSCC WGS blood_normal CPT0278010002 70f3bcdb-e8fd-4054-b659-dfa5e4def710_wgs_gdc_realn.bam 73719380386 BAM harmonized CPTAC3 0cc84dab-4866-4121-aac6-08c250d8727a 6afa7bc5233c503b48d6ef07a2069d26 { 'aliquot_tag': 'ALQ_dc7578a9', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05150.WGS.T C3L-05150 LSCC WGS tumor CPT0277920009 CPT0277920009.WholeGenome.RP-2158.bam 30018505319 BAM aligned CPTAC3 aacd0bc4-b71d-41f0-b6de-d81ea37b1607 2189aa6682c9f31525f3469638ba02bf { 'aliquot_tag': 'ALQ_dd40fad0', 'gdc_sample_type': 'Primary Tumor' } @@ -16892,16 +17880,16 @@ C3L-05172.miRNA-Seq.A C3L-05172 LSCC miRNA-Seq tissue_normal CPT0297360009 20051 C3L-05172.miRNA-Seq.A.hg38 C3L-05172 LSCC miRNA-Seq tissue_normal CPT0297360009 7bc4be93-4d22-4b64-92bd-8be3b5935b6f_mirnaseq_gdc_realn.bam 279423564 BAM harmonized CPTAC3 d7ed63d6-f26e-42f3-bffd-8b1f07568b04 8477df22bfb56376479303e3588d14b0 { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05172.miRNA-Seq.T C3L-05172 LSCC miRNA-Seq tumor CPT0297320009 200224_UNC31-K00269_0267_AHC722BBXY_TCCCGA_S46_L007_R1_001.unaln.bam 197772926 BAM unaligned CPTAC3 13452f59-74ee-4b97-b355-c105758e6097 ed12a4ecb383745eb3c74d07c9743aeb { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor' } C3L-05172.miRNA-Seq.T.hg38 C3L-05172 LSCC miRNA-Seq tumor CPT0297320009 f3222863-0f84-4926-8dfd-6233c0ba92ae_mirnaseq_gdc_realn.bam 224629784 BAM harmonized CPTAC3 ae429d8c-9bcf-46f1-91e2-e358d80aa09d 26aac9bf5bc220c151173f4a70f57469 { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor' } -C3L-05172.RNA-Seq.chimeric.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 1c0b5b48-7adb-4265-a10e-320ab7d7b112.rna_seq.chimeric.gdc_realn.bam 29951042 BAM chimeric harmonized CPTAC3 df427f5d-08f9-42d4-96f8-5c6e84f499cf 19d06f2fcc1cc9f4a21a31d169018562 { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05172.RNA-Seq.chimeric.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 14f42b9c-4640-4c25-ad43-6a053a4eeda8.rna_seq.chimeric.gdc_realn.bam 20697532 BAM chimeric harmonized CPTAC3 cba8b8e5-6b07-480f-9dbd-25316cd28001 166a8f092f4d7e72b5e01607512e09bc { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor' } -C3L-05172.RNA-Seq.genomic.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 1c0b5b48-7adb-4265-a10e-320ab7d7b112.rna_seq.genomic.gdc_realn.bam 8418647201 BAM genomic harmonized CPTAC3 9d63ad6c-b133-4daf-bfa2-5c9d3a31b14b 513b3f06fffb2727419e6e43fdfcc9b5 { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05172.RNA-Seq.genomic.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 14f42b9c-4640-4c25-ad43-6a053a4eeda8.rna_seq.genomic.gdc_realn.bam 5433121012 BAM genomic harmonized CPTAC3 87ba2fdd-1469-48c0-bd4f-b90b9d21792e 3aa39cdb411b592af5f1d4737f5c2d6b { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor' } -C3L-05172.RNA-Seq.R1_L001.A C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCACGGAC-GTCTCGCA_S3_L001_R1_001.fastq.gz 3707732955 FASTQ R1_L001 unaligned CPTAC3 819fbd4a-e5f1-4d53-bbf7-8b9d3cb9565d b96dfbe5d1e90628072d6ed11df3ee6f { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05172.RNA-Seq.R1_L004.T C3L-05172 LSCC RNA-Seq tumor CPT0297320009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCAATGCA-GGAACGTT_S14_L004_R1_001.fastq.gz 2621957559 FASTQ R1_L004 unaligned CPTAC3 f31993fe-df52-42b8-9be6-ce9297eb6d51 2f12d44b289d4fd5d57c9a0f3580074a { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor' } -C3L-05172.RNA-Seq.R2_L001.A C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCACGGAC-GTCTCGCA_S3_L001_R2_001.fastq.gz 4578052186 FASTQ R2_L001 unaligned CPTAC3 209a6677-1a54-45fd-8105-9533e9e36511 07075722d1aa7b0eaa22269d645150d1 { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05172.RNA-Seq.R2_L004.T C3L-05172 LSCC RNA-Seq tumor CPT0297320009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCAATGCA-GGAACGTT_S14_L004_R2_001.fastq.gz 2760954111 FASTQ R2_L004 unaligned CPTAC3 bcc70605-36f2-47a9-8f4e-c6a2c97f62ce 85c577006ca647d7486975fa9cc42515 { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor' } -C3L-05172.RNA-Seq.transcriptome.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 1c0b5b48-7adb-4265-a10e-320ab7d7b112.rna_seq.transcriptome.gdc_realn.bam 8750812522 BAM transcriptome harmonized CPTAC3 81b91f28-2b69-4595-8688-43fc2e9cff3e 1bd1f6b96e7d18e05db08bf24e80e517 { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05172.RNA-Seq.transcriptome.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 14f42b9c-4640-4c25-ad43-6a053a4eeda8.rna_seq.transcriptome.gdc_realn.bam 7200866618 BAM transcriptome harmonized CPTAC3 22d39b4f-a11b-4f66-aead-a5b04b7022f2 97ddb9e956bdde3a0ecd2ecdcea6cb13 { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor' } +C3L-05172.RNA-Seq.chimeric.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 6957ac09-2054-4b1a-9516-aa55412924f1.rna_seq.chimeric.gdc_realn.bam 29938292 BAM chimeric harmonized CPTAC3 89e35627-0752-4074-b859-fdc754844467 46c42a0235d1ad8d1b0314dc198066a4 { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05172.RNA-Seq.chimeric.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 b3fbd36b-afb6-46db-9865-7b93d9ee6539.rna_seq.chimeric.gdc_realn.bam 20693545 BAM chimeric harmonized CPTAC3 77e75272-94f1-4c57-bee1-41bcda432e88 c68ef568524fccb761be5488ca04c9b9 { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor' } +C3L-05172.RNA-Seq.genomic.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 6957ac09-2054-4b1a-9516-aa55412924f1.rna_seq.genomic.gdc_realn.bam 8417953039 BAM genomic harmonized CPTAC3 a02cfa93-7bec-4f6f-90bd-4efea0036459 fe4c39da7ddbd25ae51bf527ba44a20b { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05172.RNA-Seq.genomic.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 b3fbd36b-afb6-46db-9865-7b93d9ee6539.rna_seq.genomic.gdc_realn.bam 5433973922 BAM genomic harmonized CPTAC3 420366ca-eb58-4ff6-b45c-e5456fcf2cf9 b30b202088b90826ac8a3265333e5108 { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor' } +C3L-05172.RNA-Seq.R1_L001.A C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCACGGAC-GTCTCGCA_S3_L001_R1_001.fastq.gz 3707732955 FASTQ R1_L001 unaligned CPTAC3 819fbd4a-e5f1-4d53-bbf7-8b9d3cb9565d b96dfbe5d1e90628072d6ed11df3ee6f { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-05172.RNA-Seq.R1_L004.T C3L-05172 LSCC RNA-Seq tumor CPT0297320009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCAATGCA-GGAACGTT_S14_L004_R1_001.fastq.gz 2621957559 FASTQ R1_L004 unaligned CPTAC3 f31993fe-df52-42b8-9be6-ce9297eb6d51 2f12d44b289d4fd5d57c9a0f3580074a { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-05172.RNA-Seq.R2_L001.A C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCACGGAC-GTCTCGCA_S3_L001_R2_001.fastq.gz 4578052186 FASTQ R2_L001 unaligned CPTAC3 209a6677-1a54-45fd-8105-9533e9e36511 07075722d1aa7b0eaa22269d645150d1 { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-05172.RNA-Seq.R2_L004.T C3L-05172 LSCC RNA-Seq tumor CPT0297320009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GCAATGCA-GGAACGTT_S14_L004_R2_001.fastq.gz 2760954111 FASTQ R2_L004 unaligned CPTAC3 bcc70605-36f2-47a9-8f4e-c6a2c97f62ce 85c577006ca647d7486975fa9cc42515 { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-05172.RNA-Seq.transcriptome.A.hg38 C3L-05172 LSCC RNA-Seq tissue_normal CPT0297360009 6957ac09-2054-4b1a-9516-aa55412924f1.rna_seq.transcriptome.gdc_realn.bam 9880563058 BAM transcriptome harmonized CPTAC3 807fce24-5a0c-4ecd-840c-4e76c846f9da b991838dbbb56f4fa441b0af5f94a491 { 'aliquot_tag': 'ALQ_9cd16d44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05172.RNA-Seq.transcriptome.T.hg38 C3L-05172 LSCC RNA-Seq tumor CPT0297320009 b3fbd36b-afb6-46db-9865-7b93d9ee6539.rna_seq.transcriptome.gdc_realn.bam 8130003921 BAM transcriptome harmonized CPTAC3 e0d3fd8f-5506-43bf-99ca-9fcee062038e 65338345048e688079a1be425cae4693 { 'aliquot_tag': 'ALQ_6951cb84', 'gdc_sample_type': 'Primary Tumor' } C3L-05172.WGS.N C3L-05172 LSCC WGS blood_normal CPT0297430002 CPT0297430002.WholeGenome.RP-2158.bam 23178518008 BAM aligned CPTAC3 dc99c33b-4166-4ffd-b1b1-6a3b8163483f 64c8e01c251833dc68f6e1a3469d932b { 'aliquot_tag': 'ALQ_dee60b04', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05172.WGS.N.hg38 C3L-05172 LSCC WGS blood_normal CPT0297430002 b9fc8052-a489-40d8-a755-bfb51c9fb52e_wgs_gdc_realn.bam 68180485289 BAM harmonized CPTAC3 68752f3f-4795-4299-ab31-8ad5af5ae616 985efc0822537676d4e1ceefef569f0d { 'aliquot_tag': 'ALQ_dee60b04', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05172.WGS.T C3L-05172 LSCC WGS tumor CPT0297320006 CPT0297320006.WholeGenome.RP-2158.bam 29724775421 BAM aligned CPTAC3 b6cf2f2c-1fd1-4b12-a3b3-7c4914af63af 98dd7af734347d0f5d4b4631271ad048 { 'aliquot_tag': 'ALQ_f9eed615', 'gdc_sample_type': 'Primary Tumor' } @@ -16920,16 +17908,16 @@ C3L-05176.miRNA-Seq.A C3L-05176 LSCC miRNA-Seq tissue_normal CPT0297850009 20051 C3L-05176.miRNA-Seq.A.hg38 C3L-05176 LSCC miRNA-Seq tissue_normal CPT0297850009 b4df2c81-2d78-49fa-a0b9-f1cff2d099bf_mirnaseq_gdc_realn.bam 212830645 BAM harmonized CPTAC3 2b972157-0a16-426b-bcc6-893817fa19aa ceeee5910fa99b3798b8d92e1b7037d5 { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05176.miRNA-Seq.T C3L-05176 LSCC miRNA-Seq tumor CPT0297810009 200224_UNC31-K00269_0267_AHC722BBXY_TCGGCA_S48_L007_R1_001.unaln.bam 228755461 BAM unaligned CPTAC3 f8fc81c6-ab12-44b2-a832-4b676f24ea5f d2db65bd5cb0855bfdce17d008c0a330 { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor' } C3L-05176.miRNA-Seq.T.hg38 C3L-05176 LSCC miRNA-Seq tumor CPT0297810009 0823bfb1-ba0f-4e59-a49c-ee19dadb5bcd_mirnaseq_gdc_realn.bam 257510902 BAM harmonized CPTAC3 24027047-7354-4190-b35b-336d4012dfdc 3019e74c7d4ec4465fce1c1492eabdc2 { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor' } -C3L-05176.RNA-Seq.chimeric.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 40b903c3-fe78-4d68-aa2a-3636f2c27c3a.rna_seq.chimeric.gdc_realn.bam 28786519 BAM chimeric harmonized CPTAC3 5facb35f-80b7-4b20-8508-8af9f9ab986f aebd9921edc01c9fb168d5447a188a94 { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05176.RNA-Seq.chimeric.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 550225fb-d8d9-48d1-9658-bcbafe59ee5b.rna_seq.chimeric.gdc_realn.bam 42822465 BAM chimeric harmonized CPTAC3 b76c96fe-326b-4c90-88b6-726d865d54a6 b84834e0b0ed0a6745482688ec61cab7 { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor' } -C3L-05176.RNA-Seq.genomic.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 40b903c3-fe78-4d68-aa2a-3636f2c27c3a.rna_seq.genomic.gdc_realn.bam 7944654841 BAM genomic harmonized CPTAC3 c22d9732-0702-4544-83a7-9da5a4a3270f a75c3e01b936282163f3ac0bbabe2a78 { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05176.RNA-Seq.genomic.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 550225fb-d8d9-48d1-9658-bcbafe59ee5b.rna_seq.genomic.gdc_realn.bam 10203580096 BAM genomic harmonized CPTAC3 c0bf8052-0fe8-4f9c-8332-5d59c201013c 85425c607b06cd4ef7d326050e59cf00 { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor' } -C3L-05176.RNA-Seq.R1_L002.A C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 200505_UNC32-K00270_0246_BHH5F5BBXY_AACGTTCC-GGAGTACT_S5_L002_R1_001.fastq.gz 3558919849 FASTQ R1_L002 unaligned CPTAC3 6514b654-ce55-43d0-aef0-a041ee796908 1946ecdc176c0a7306f5bfdf9f6db864 { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05176.RNA-Seq.R1_L004.T C3L-05176 LSCC RNA-Seq tumor CPT0297810009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ACCTTGGC-GGCCTCAT_S16_L004_R1_001.fastq.gz 5137036658 FASTQ R1_L004 unaligned CPTAC3 9a0bd005-e1bb-48d1-a21c-f820577a17c0 2dcf2740cabf3b98e935b8b119f2c934 { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor' } -C3L-05176.RNA-Seq.R2_L002.A C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 200505_UNC32-K00270_0246_BHH5F5BBXY_AACGTTCC-GGAGTACT_S5_L002_R2_001.fastq.gz 4310578591 FASTQ R2_L002 unaligned CPTAC3 ab6848cd-7f4a-4034-8aae-1a79e80cc707 ed930ae0f8c374084213dae2ae754e50 { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05176.RNA-Seq.R2_L004.T C3L-05176 LSCC RNA-Seq tumor CPT0297810009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ACCTTGGC-GGCCTCAT_S16_L004_R2_001.fastq.gz 5487723603 FASTQ R2_L004 unaligned CPTAC3 a70c8433-2b36-4fd2-980d-aa7a48aeb584 7322a23e8c8ffa09af3c2f4c62c9cbcc { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor' } -C3L-05176.RNA-Seq.transcriptome.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 40b903c3-fe78-4d68-aa2a-3636f2c27c3a.rna_seq.transcriptome.gdc_realn.bam 8348538602 BAM transcriptome harmonized CPTAC3 91fadb44-ffb0-4ec7-a7e4-9673b269d4e7 6f2ca989dd04a134a22b63efa0a1125c { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05176.RNA-Seq.transcriptome.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 550225fb-d8d9-48d1-9658-bcbafe59ee5b.rna_seq.transcriptome.gdc_realn.bam 12524999529 BAM transcriptome harmonized CPTAC3 f35e716b-18f4-49cb-afd5-0216cc5a8514 f76f6a30628357e98d83d3f9936dc34b { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor' } +C3L-05176.RNA-Seq.chimeric.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 e68c554e-fbf6-4bbe-9728-85ba4dc60a43.rna_seq.chimeric.gdc_realn.bam 28771931 BAM chimeric harmonized CPTAC3 9aefe99b-8b42-4639-adcc-5ef7e36a4996 269fbfda07968fefec6b2f5079431532 { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05176.RNA-Seq.chimeric.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 92ed0f67-10de-4e70-91d9-18e48ca57f3b.rna_seq.chimeric.gdc_realn.bam 42811558 BAM chimeric harmonized CPTAC3 1e7a95ac-e704-4045-8d18-0f287d7ec099 f90a103132db05adb741333341cc53fe { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor' } +C3L-05176.RNA-Seq.genomic.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 e68c554e-fbf6-4bbe-9728-85ba4dc60a43.rna_seq.genomic.gdc_realn.bam 7945946869 BAM genomic harmonized CPTAC3 1786f977-de2b-488d-ac3c-2c956fcb36ac 52aa5fc4763c8cccb3bc5d0f642627e2 { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05176.RNA-Seq.genomic.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 92ed0f67-10de-4e70-91d9-18e48ca57f3b.rna_seq.genomic.gdc_realn.bam 10206211884 BAM genomic harmonized CPTAC3 b1d1c691-be66-4d77-941a-ad7e3d8d4a21 a54507d44d66340172378dfd12444193 { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor' } +C3L-05176.RNA-Seq.R1_L002.A C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 200505_UNC32-K00270_0246_BHH5F5BBXY_AACGTTCC-GGAGTACT_S5_L002_R1_001.fastq.gz 3558919849 FASTQ R1_L002 unaligned CPTAC3 6514b654-ce55-43d0-aef0-a041ee796908 1946ecdc176c0a7306f5bfdf9f6db864 { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-05176.RNA-Seq.R1_L004.T C3L-05176 LSCC RNA-Seq tumor CPT0297810009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ACCTTGGC-GGCCTCAT_S16_L004_R1_001.fastq.gz 5137036658 FASTQ R1_L004 unaligned CPTAC3 9a0bd005-e1bb-48d1-a21c-f820577a17c0 2dcf2740cabf3b98e935b8b119f2c934 { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-05176.RNA-Seq.R2_L002.A C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 200505_UNC32-K00270_0246_BHH5F5BBXY_AACGTTCC-GGAGTACT_S5_L002_R2_001.fastq.gz 4310578591 FASTQ R2_L002 unaligned CPTAC3 ab6848cd-7f4a-4034-8aae-1a79e80cc707 ed930ae0f8c374084213dae2ae754e50 { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-05176.RNA-Seq.R2_L004.T C3L-05176 LSCC RNA-Seq tumor CPT0297810009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ACCTTGGC-GGCCTCAT_S16_L004_R2_001.fastq.gz 5487723603 FASTQ R2_L004 unaligned CPTAC3 a70c8433-2b36-4fd2-980d-aa7a48aeb584 7322a23e8c8ffa09af3c2f4c62c9cbcc { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-05176.RNA-Seq.transcriptome.A.hg38 C3L-05176 LSCC RNA-Seq tissue_normal CPT0297850009 e68c554e-fbf6-4bbe-9728-85ba4dc60a43.rna_seq.transcriptome.gdc_realn.bam 9430742472 BAM transcriptome harmonized CPTAC3 65a01918-f54d-497e-b7af-ed56d8074f2e a84e0defb5124a46991dc24ed0fbfe34 { 'aliquot_tag': 'ALQ_b1b6e757', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05176.RNA-Seq.transcriptome.T.hg38 C3L-05176 LSCC RNA-Seq tumor CPT0297810009 92ed0f67-10de-4e70-91d9-18e48ca57f3b.rna_seq.transcriptome.gdc_realn.bam 14166215101 BAM transcriptome harmonized CPTAC3 a3e497c8-fd40-4041-a45b-3c4d47bb7f04 83d763d36f07eaa20c18446a158310fc { 'aliquot_tag': 'ALQ_44364197', 'gdc_sample_type': 'Primary Tumor' } C3L-05176.WGS.N C3L-05176 LSCC WGS blood_normal CPT0297920002 CPT0297920002.WholeGenome.RP-2158.bam 29225582987 BAM aligned CPTAC3 156826c1-8077-43a5-a20f-d922277786cc 633ebc16cc7d7e68a7672ca996926c06 { 'aliquot_tag': 'ALQ_5f18316a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05176.WGS.N C3L-05176 LSCC WGS blood_normal CPT0297920002 CPT0297920002.WholeGenome.RP-2158.bam 29269475686 BAM aligned CPTAC3 9537f307-3a43-4e73-b368-57469bba720d a2178da93f50120aedb702373cd10df8 { 'aliquot_tag': 'ALQ_5f18316a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05176.WGS.N.hg38 C3L-05176 LSCC WGS blood_normal CPT0297920002 264ca255-c027-4787-a706-2a38e4fe0aac_wgs_gdc_realn.bam 87749442541 BAM harmonized CPTAC3 0b6ccfaf-52b0-4cf5-a8ce-3511b17f0065 d034a3a6f1a717b27cca5a332d731630 { 'aliquot_tag': 'ALQ_5f18316a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -16949,16 +17937,16 @@ C3L-05212.miRNA-Seq.A C3L-05212 LSCC miRNA-Seq tissue_normal CPT0296760009 20051 C3L-05212.miRNA-Seq.A.hg38 C3L-05212 LSCC miRNA-Seq tissue_normal CPT0296760009 dde2fde7-62b3-4480-a126-04b9f20b4462_mirnaseq_gdc_realn.bam 263072653 BAM harmonized CPTAC3 5df75c12-420b-4cd5-9428-ea3e98c7c552 1696d895b628ced73cd8195146892ddb { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05212.miRNA-Seq.T C3L-05212 LSCC miRNA-Seq tumor CPT0296710009 200224_UNC31-K00269_0267_AHC722BBXY_TATAAT_S44_L007_R1_001.unaln.bam 291326509 BAM unaligned CPTAC3 c31a76c1-3ed6-4572-93c9-a0a987c03424 5b560e3ae988847626bdeda6ec194c7d { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor' } C3L-05212.miRNA-Seq.T.hg38 C3L-05212 LSCC miRNA-Seq tumor CPT0296710009 6b4d3edf-2a93-4970-a3de-f80cad4feb82_mirnaseq_gdc_realn.bam 317091984 BAM harmonized CPTAC3 00ffb5ed-4fba-4d1b-bca4-f802eec34c29 5d4fe1574a0389ab85e481a02b41a0f0 { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor' } -C3L-05212.RNA-Seq.chimeric.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 21a5a8f7-66c9-4554-851d-d4d26f591213.rna_seq.chimeric.gdc_realn.bam 36588452 BAM chimeric harmonized CPTAC3 039c9b9b-61cd-4a70-87e3-a1c44a2fb040 37c11bd087eda70b7638810bd32cc35f { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05212.RNA-Seq.chimeric.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 dab48b2c-4640-49e7-a9f6-c4304d570809.rna_seq.chimeric.gdc_realn.bam 45812904 BAM chimeric harmonized CPTAC3 8be4e92d-2acb-48d2-8712-fbc7aea7a6dc 847be628c5edfd9c895d087927e54886 { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor' } -C3L-05212.RNA-Seq.genomic.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 21a5a8f7-66c9-4554-851d-d4d26f591213.rna_seq.genomic.gdc_realn.bam 9309753161 BAM genomic harmonized CPTAC3 fa3d89be-bcfe-428e-9f24-6679dbddeb76 2bcabd34b7b28680fecad4a7e15ec41a { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05212.RNA-Seq.genomic.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 dab48b2c-4640-49e7-a9f6-c4304d570809.rna_seq.genomic.gdc_realn.bam 11335588633 BAM genomic harmonized CPTAC3 ecc376cb-274e-434b-8b8f-4bdc28f79bb4 91d73b178cc4fa623bf71a0f9972686f { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor' } -C3L-05212.RNA-Seq.R1_L001.A C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGCGTGA-GCGCCTGT_S2_L001_R1_001.fastq.gz 4085267116 FASTQ R1_L001 unaligned CPTAC3 e649107d-a626-49b3-94b4-c455ab9f0139 6f34d7023b44e1cc75b2b5a1f9de5329 { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05212.RNA-Seq.R1_L003.T C3L-05212 LSCC RNA-Seq tumor CPT0296710009 200518_UNC32-K00270_0247_AHH573BBXY_GGAGCGTC-GTCCGTGC_S27_L003_R1_001.fastq.gz 5371243966 FASTQ R1_L003 unaligned CPTAC3 749d881c-92f4-4ba1-8a5d-3b95fa4a5938 6dff6b2c18ff8a15bd5339ca3054d1da { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor' } -C3L-05212.RNA-Seq.R2_L001.A C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGCGTGA-GCGCCTGT_S2_L001_R2_001.fastq.gz 5169036395 FASTQ R2_L001 unaligned CPTAC3 fa735290-d0e0-456f-b2aa-e48b0b39a19d 51974718c1b14b499d8c774a84c066f6 { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05212.RNA-Seq.R2_L003.T C3L-05212 LSCC RNA-Seq tumor CPT0296710009 200518_UNC32-K00270_0247_AHH573BBXY_GGAGCGTC-GTCCGTGC_S27_L003_R2_001.fastq.gz 6365162923 FASTQ R2_L003 unaligned CPTAC3 65ebc622-bb9d-4a16-a8e3-4bc1ddbfde3d fc0014ce369cfacd334c6ad4659877ab { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor' } -C3L-05212.RNA-Seq.transcriptome.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 21a5a8f7-66c9-4554-851d-d4d26f591213.rna_seq.transcriptome.gdc_realn.bam 9916295954 BAM transcriptome harmonized CPTAC3 351ec9f7-bcbf-48d9-9219-9d4f16a85dba 42dfe714c4d327d450b44f52301d467e { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05212.RNA-Seq.transcriptome.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 dab48b2c-4640-49e7-a9f6-c4304d570809.rna_seq.transcriptome.gdc_realn.bam 13514039183 BAM transcriptome harmonized CPTAC3 384bd7f3-6600-412b-8cd3-e8aa779aef39 71a7417ec4340a0487f8d132e9bf4942 { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor' } +C3L-05212.RNA-Seq.chimeric.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 a05e6353-ca92-41bb-82ae-d329f9d8b212.rna_seq.chimeric.gdc_realn.bam 36577303 BAM chimeric harmonized CPTAC3 bfe63e7c-4363-4d52-95d9-2c3b46291e93 a1f670386b65eb6b78f2db0018e59916 { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05212.RNA-Seq.chimeric.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 1e12a09f-90b9-4f5b-989e-f343bb08b67f.rna_seq.chimeric.gdc_realn.bam 45814527 BAM chimeric harmonized CPTAC3 202c3753-b57c-47e0-b39a-13f997ecd26f b2f7477cc4b67242a437544fa98b40ea { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor' } +C3L-05212.RNA-Seq.genomic.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 a05e6353-ca92-41bb-82ae-d329f9d8b212.rna_seq.genomic.gdc_realn.bam 9311061790 BAM genomic harmonized CPTAC3 bd4f8ef1-bce2-4772-8438-a8dc047aa56b 55ba70765fe66e2f0678362b6668bd3f { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05212.RNA-Seq.genomic.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 1e12a09f-90b9-4f5b-989e-f343bb08b67f.rna_seq.genomic.gdc_realn.bam 11337502388 BAM genomic harmonized CPTAC3 88d9fbc2-9b74-480c-8109-d0d72292a490 1b110f3c009b57a0f0ccb855a82bc5be { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor' } +C3L-05212.RNA-Seq.R1_L001.A C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGCGTGA-GCGCCTGT_S2_L001_R1_001.fastq.gz 4085267116 FASTQ R1_L001 unaligned CPTAC3 e649107d-a626-49b3-94b4-c455ab9f0139 6f34d7023b44e1cc75b2b5a1f9de5329 { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-05212.RNA-Seq.R1_L003.T C3L-05212 LSCC RNA-Seq tumor CPT0296710009 200518_UNC32-K00270_0247_AHH573BBXY_GGAGCGTC-GTCCGTGC_S27_L003_R1_001.fastq.gz 5371243966 FASTQ R1_L003 unaligned CPTAC3 749d881c-92f4-4ba1-8a5d-3b95fa4a5938 6dff6b2c18ff8a15bd5339ca3054d1da { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-05212.RNA-Seq.R2_L001.A C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGGCGTGA-GCGCCTGT_S2_L001_R2_001.fastq.gz 5169036395 FASTQ R2_L001 unaligned CPTAC3 fa735290-d0e0-456f-b2aa-e48b0b39a19d 51974718c1b14b499d8c774a84c066f6 { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-05212.RNA-Seq.R2_L003.T C3L-05212 LSCC RNA-Seq tumor CPT0296710009 200518_UNC32-K00270_0247_AHH573BBXY_GGAGCGTC-GTCCGTGC_S27_L003_R2_001.fastq.gz 6365162923 FASTQ R2_L003 unaligned CPTAC3 65ebc622-bb9d-4a16-a8e3-4bc1ddbfde3d fc0014ce369cfacd334c6ad4659877ab { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-05212.RNA-Seq.transcriptome.A.hg38 C3L-05212 LSCC RNA-Seq tissue_normal CPT0296760009 a05e6353-ca92-41bb-82ae-d329f9d8b212.rna_seq.transcriptome.gdc_realn.bam 11226861746 BAM transcriptome harmonized CPTAC3 6a7c434e-f270-4c31-9a34-ebb905e00e07 490fec8f52d1bc5d0ed89eb55112ff24 { 'aliquot_tag': 'ALQ_a13724e6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05212.RNA-Seq.transcriptome.T.hg38 C3L-05212 LSCC RNA-Seq tumor CPT0296710009 1e12a09f-90b9-4f5b-989e-f343bb08b67f.rna_seq.transcriptome.gdc_realn.bam 15275340000 BAM transcriptome harmonized CPTAC3 109fe0c1-f35e-4bd1-998f-545108af5a80 54d3af2e3a94854ce5d0a62f5cf2debe { 'aliquot_tag': 'ALQ_1317f8f6', 'gdc_sample_type': 'Primary Tumor' } C3L-05212.WGS.N C3L-05212 LSCC WGS blood_normal CPT0296830002 CPT0296830002.WholeGenome.RP-2158.bam 22568046114 BAM aligned CPTAC3 bd31848e-ef07-4d14-a60b-b63e4039e1bc 2ad9c885dfaff36bdbe6b524eca7e275 { 'aliquot_tag': 'ALQ_f53c0cb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05212.WGS.N.hg38 C3L-05212 LSCC WGS blood_normal CPT0296830002 bf747777-536e-4fc9-bac9-e55b29857ab1_wgs_gdc_realn.bam 67352781148 BAM harmonized CPTAC3 730b7bba-f95b-41c5-9280-824de58d9c4d 981939eb35815e60c0a87f06e4eeb65f { 'aliquot_tag': 'ALQ_f53c0cb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05212.WGS.T C3L-05212 LSCC WGS tumor CPT0296710006 CPT0296710006.WholeGenome.RP-2158.bam 20184063318 BAM aligned CPTAC3 40904e59-e895-41d1-9207-4374cb0b9c3d ba5a5a2b4b2992aabd62123cdb1fe9c1 { 'aliquot_tag': 'ALQ_83a8e567', 'gdc_sample_type': 'Primary Tumor' } @@ -16977,16 +17965,16 @@ C3L-05221.miRNA-Seq.A C3L-05221 LSCC miRNA-Seq tissue_normal CPT0298170009 20051 C3L-05221.miRNA-Seq.A.hg38 C3L-05221 LSCC miRNA-Seq tissue_normal CPT0298170009 c196831a-1a99-4dc9-b365-e29021961b62_mirnaseq_gdc_realn.bam 294895764 BAM harmonized CPTAC3 c3049936-7ad8-4a12-befc-c607e0985cff ebbab817fcb96fd190bd77672210710e { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05221.miRNA-Seq.T C3L-05221 LSCC miRNA-Seq tumor CPT0298140009 200224_UNC31-K00269_0267_AHC722BBXY_ATCACG_S1_L006_R1_001.unaln.bam 206646803 BAM unaligned CPTAC3 dff2e1d3-37c3-4658-8796-3b68c6595d2f 926225a8c8d8d1e34783447b7b67db02 { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor' } C3L-05221.miRNA-Seq.T.hg38 C3L-05221 LSCC miRNA-Seq tumor CPT0298140009 c37de72e-2f9b-4fed-8fac-218feffcfb2d_mirnaseq_gdc_realn.bam 224476452 BAM harmonized CPTAC3 07ee17cb-e3aa-41c1-842a-0c710374c2cd 323b1dea1450eb0b58bdf1d79a3b2309 { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor' } -C3L-05221.RNA-Seq.chimeric.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed9dfc5-d188-41b9-af65-8b8714e8cc08.rna_seq.chimeric.gdc_realn.bam 29418418 BAM chimeric harmonized CPTAC3 98c17afd-c29e-4dbc-bab5-1ff0663e653d 29c15749c496ce4127f3a43ea515a339 { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05221.RNA-Seq.chimeric.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 caca4a8d-08b0-4996-a9f2-b6af2f3a3127.rna_seq.chimeric.gdc_realn.bam 61648585 BAM chimeric harmonized CPTAC3 7627a88e-03ff-4d5a-926a-51aef08f6152 4083e492264fc874c5db05a5875378fa { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor' } -C3L-05221.RNA-Seq.genomic.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed9dfc5-d188-41b9-af65-8b8714e8cc08.rna_seq.genomic.gdc_realn.bam 8210493341 BAM genomic harmonized CPTAC3 794de36c-69dd-47f9-bfc1-069d43c212e3 f59aab879cb8795b94ff3159a622827b { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05221.RNA-Seq.genomic.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 caca4a8d-08b0-4996-a9f2-b6af2f3a3127.rna_seq.genomic.gdc_realn.bam 9374205491 BAM genomic harmonized CPTAC3 a44c1cba-8222-474a-8613-8106203ef00f 619ad44f36da803052c03c494c50f228 { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor' } -C3L-05221.RNA-Seq.R1_L002.A C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAGAATT-ACCGGCCA_S7_L002_R1_001.fastq.gz 3650803514 FASTQ R1_L002 unaligned CPTAC3 fe41e3b3-3dfe-471a-909c-0cf299ff0708 9c8b748ef62ccceadadb70b7f4c80b87 { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05221.RNA-Seq.R1_L005.T C3L-05221 LSCC RNA-Seq tumor CPT0298140009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATCTCG-ATCTTAGT_S17_L005_R1_001.fastq.gz 4646995701 FASTQ R1_L005 unaligned CPTAC3 f8f144f4-7082-4c4e-bbfc-422b4dfebf80 e0ea6adf4d9090de329c7025c7da07d6 { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor' } -C3L-05221.RNA-Seq.R2_L002.A C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAGAATT-ACCGGCCA_S7_L002_R2_001.fastq.gz 4367339220 FASTQ R2_L002 unaligned CPTAC3 7650893e-2e98-4ac1-adbb-1e02d942a61d 733a3fab6e7528cc415c3623e1167fb4 { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05221.RNA-Seq.R2_L005.T C3L-05221 LSCC RNA-Seq tumor CPT0298140009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATCTCG-ATCTTAGT_S17_L005_R2_001.fastq.gz 4922576827 FASTQ R2_L005 unaligned CPTAC3 ef16c400-6f72-4338-943e-25fe26327a3d 83c78f0346e1cd2b010bcfa360d5158f { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor' } -C3L-05221.RNA-Seq.transcriptome.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed9dfc5-d188-41b9-af65-8b8714e8cc08.rna_seq.transcriptome.gdc_realn.bam 8220770895 BAM transcriptome harmonized CPTAC3 d01c7a3b-d41f-42a4-bf59-278a9a3a1fb2 966fe04c9ba42ad22776768849f6e8eb { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05221.RNA-Seq.transcriptome.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 caca4a8d-08b0-4996-a9f2-b6af2f3a3127.rna_seq.transcriptome.gdc_realn.bam 11761234785 BAM transcriptome harmonized CPTAC3 6e871f42-f007-4375-9e5c-b3bf6016b35e b662d6dbfebf077d1b92ea3e78ba2e80 { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor' } +C3L-05221.RNA-Seq.chimeric.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed49850-befd-49cd-857b-9434d8eec5e8.rna_seq.chimeric.gdc_realn.bam 29441197 BAM chimeric harmonized CPTAC3 c77def87-f7ba-4186-a66f-9c0282b0affb d15c0c56471f9ac58163c07ac1dbed3e { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05221.RNA-Seq.chimeric.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 aa750749-9190-42f8-8e2d-05f90086a93c.rna_seq.chimeric.gdc_realn.bam 61650923 BAM chimeric harmonized CPTAC3 32ef953d-577e-4836-bf5e-de96cf8a9171 83c8675bd26af4b61df5d06ed87f8341 { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor' } +C3L-05221.RNA-Seq.genomic.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed49850-befd-49cd-857b-9434d8eec5e8.rna_seq.genomic.gdc_realn.bam 8212186078 BAM genomic harmonized CPTAC3 d0cd19d6-4dc0-410c-8d03-36df4e521bf7 278ac783ad9eb0461eb141e59b9b5b61 { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05221.RNA-Seq.genomic.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 aa750749-9190-42f8-8e2d-05f90086a93c.rna_seq.genomic.gdc_realn.bam 9376065416 BAM genomic harmonized CPTAC3 9e515b60-c193-49e0-a352-5ab4e043b528 ca7eeccaf39e2e13bd4888b299fa8957 { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor' } +C3L-05221.RNA-Seq.R1_L002.A C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAGAATT-ACCGGCCA_S7_L002_R1_001.fastq.gz 3650803514 FASTQ R1_L002 unaligned CPTAC3 fe41e3b3-3dfe-471a-909c-0cf299ff0708 9c8b748ef62ccceadadb70b7f4c80b87 { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-05221.RNA-Seq.R1_L005.T C3L-05221 LSCC RNA-Seq tumor CPT0298140009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATCTCG-ATCTTAGT_S17_L005_R1_001.fastq.gz 4646995701 FASTQ R1_L005 unaligned CPTAC3 f8f144f4-7082-4c4e-bbfc-422b4dfebf80 e0ea6adf4d9090de329c7025c7da07d6 { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-05221.RNA-Seq.R2_L002.A C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 200505_UNC32-K00270_0246_BHH5F5BBXY_GCAGAATT-ACCGGCCA_S7_L002_R2_001.fastq.gz 4367339220 FASTQ R2_L002 unaligned CPTAC3 7650893e-2e98-4ac1-adbb-1e02d942a61d 733a3fab6e7528cc415c3623e1167fb4 { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3L-05221.RNA-Seq.R2_L005.T C3L-05221 LSCC RNA-Seq tumor CPT0298140009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATCTCG-ATCTTAGT_S17_L005_R2_001.fastq.gz 4922576827 FASTQ R2_L005 unaligned CPTAC3 ef16c400-6f72-4338-943e-25fe26327a3d 83c78f0346e1cd2b010bcfa360d5158f { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-05221.RNA-Seq.transcriptome.A.hg38 C3L-05221 LSCC RNA-Seq tissue_normal CPT0298170009 6ed49850-befd-49cd-857b-9434d8eec5e8.rna_seq.transcriptome.gdc_realn.bam 9227753472 BAM transcriptome harmonized CPTAC3 cadb1d9c-1348-41e9-b03b-a7c3c46667ee 842f271c9e0ccc161f74eabe2ba0e6d9 { 'aliquot_tag': 'ALQ_1a319516', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05221.RNA-Seq.transcriptome.T.hg38 C3L-05221 LSCC RNA-Seq tumor CPT0298140009 aa750749-9190-42f8-8e2d-05f90086a93c.rna_seq.transcriptome.gdc_realn.bam 13212002583 BAM transcriptome harmonized CPTAC3 c51b3a7d-bc2a-4725-8306-c105545a187b f175fba879cc2f070abd95b291eab41b { 'aliquot_tag': 'ALQ_5d91efc6', 'gdc_sample_type': 'Primary Tumor' } C3L-05221.WGS.N C3L-05221 LSCC WGS blood_normal CPT0298260002 CPT0298260002.WholeGenome.RP-2158.bam 22543254031 BAM aligned CPTAC3 6fc63f53-736e-4508-8f63-fd2228c5c161 af9a936f245fb8331427f1437e0d111e { 'aliquot_tag': 'ALQ_36171780', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05221.WGS.N.hg38 C3L-05221 LSCC WGS blood_normal CPT0298260002 7efd2357-2f36-4670-a8ab-4ec4a050505c_wgs_gdc_realn.bam 66900222214 BAM harmonized CPTAC3 bc4fff91-13c2-4c76-b669-6f556586d88e 39c3ac32b2328ef22d2864da975d06f5 { 'aliquot_tag': 'ALQ_36171780', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05221.WGS.T C3L-05221 LSCC WGS tumor CPT0298140006 CPT0298140006.WholeGenome.RP-2158.bam 26197423404 BAM aligned CPTAC3 8c282023-004c-43b1-95e6-e441ac94356e 8cdfcfd6bb4bb0dce5029a55c9389177 { 'aliquot_tag': 'ALQ_cd2ef257', 'gdc_sample_type': 'Primary Tumor' } @@ -17005,16 +17993,16 @@ C3L-05225.miRNA-Seq.A C3L-05225 LSCC miRNA-Seq tissue_normal CPT0296620009 20051 C3L-05225.miRNA-Seq.A.hg38 C3L-05225 LSCC miRNA-Seq tissue_normal CPT0296620009 c3edcb7c-7d8f-4592-8110-6a612c194ed1_mirnaseq_gdc_realn.bam 241073081 BAM harmonized CPTAC3 72c885d8-c0e3-4280-9a23-79b869f4587b 7d2947180819212272477aeccaffb8cc { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05225.miRNA-Seq.T C3L-05225 LSCC miRNA-Seq tumor CPT0296570009 200224_UNC31-K00269_0267_AHC722BBXY_TACAGC_S43_L007_R1_001.unaln.bam 209078641 BAM unaligned CPTAC3 dcd7b867-b5ef-40cd-bd22-11ea8393c1df 6a4432dcfcf943dd8120c725660a6ea6 { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor' } C3L-05225.miRNA-Seq.T.hg38 C3L-05225 LSCC miRNA-Seq tumor CPT0296570009 fa422711-a088-4ddc-b5c3-05158f13e275_mirnaseq_gdc_realn.bam 231859610 BAM harmonized CPTAC3 4bcd04dd-cd7e-412d-b407-db8cba3bd8b8 2f7ebf51b9d250f2fe790d8a73491f4d { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor' } -C3L-05225.RNA-Seq.chimeric.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 09300c82-1bc7-440e-b373-79bb132bc137.rna_seq.chimeric.gdc_realn.bam 31350112 BAM chimeric harmonized CPTAC3 db913b76-7897-4985-abac-a7843206bc09 b69fa151cf1960a228bdcac664105199 { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05225.RNA-Seq.chimeric.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 2aa1e63a-3983-4041-90d6-b8068e9f45bc.rna_seq.chimeric.gdc_realn.bam 30123882 BAM chimeric harmonized CPTAC3 0267f26e-9414-44a3-9c66-c0cb8eec437f c8498e7ed1a93b5031c77a9d3c1eecf6 { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor' } -C3L-05225.RNA-Seq.genomic.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 09300c82-1bc7-440e-b373-79bb132bc137.rna_seq.genomic.gdc_realn.bam 7619794425 BAM genomic harmonized CPTAC3 aad9a568-b0ec-4f09-a798-1bf3a0c8fa75 63cb04ed49c8314dbb7a3ae7506d40e5 { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05225.RNA-Seq.genomic.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 2aa1e63a-3983-4041-90d6-b8068e9f45bc.rna_seq.genomic.gdc_realn.bam 7704186785 BAM genomic harmonized CPTAC3 3eaf3631-5e16-41f8-8aa5-b248ed8f865a 74e729522d452654025e50972fb9289e { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor' } -C3L-05225.RNA-Seq.R1_L001.A C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 200505_UNC32-K00270_0246_BHH5F5BBXY_TAATACAG-ATATTCAC_S4_L001_R1_001.fastq.gz 3442419307 FASTQ R1_L001 unaligned CPTAC3 63c26280-83e5-40ef-90fa-dea67fca8d54 3b585578bc90a18e52d864419d0879a3 { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05225.RNA-Seq.R1_L003.T C3L-05225 LSCC RNA-Seq tumor CPT0296570009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AAGATACT-ACTTACAT_S11_L003_R1_001.fastq.gz 3827548599 FASTQ R1_L003 unaligned CPTAC3 e06570ec-7adf-4b8e-80ff-f70a7eec89b0 67663c6fefe4d4073c1a73b5702e5328 { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor' } -C3L-05225.RNA-Seq.R2_L001.A C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 200505_UNC32-K00270_0246_BHH5F5BBXY_TAATACAG-ATATTCAC_S4_L001_R2_001.fastq.gz 4166052663 FASTQ R2_L001 unaligned CPTAC3 2656afbf-4bb5-47df-882d-696754d8467c 974a43467ca2811f8eaa5eb525612995 { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05225.RNA-Seq.R2_L003.T C3L-05225 LSCC RNA-Seq tumor CPT0296570009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AAGATACT-ACTTACAT_S11_L003_R2_001.fastq.gz 4049671016 FASTQ R2_L003 unaligned CPTAC3 383d18bb-9260-4acc-a5b3-6e80e90d638c 0ae1740c194e6d5d1b2ea84ef1b0057c { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor' } -C3L-05225.RNA-Seq.transcriptome.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 09300c82-1bc7-440e-b373-79bb132bc137.rna_seq.transcriptome.gdc_realn.bam 7765330238 BAM transcriptome harmonized CPTAC3 d238fc4c-d6c2-4271-86a8-6f1c7f47be6d 4092d77917fc1d6ac0963f0a9d3b4ab3 { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05225.RNA-Seq.transcriptome.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 2aa1e63a-3983-4041-90d6-b8068e9f45bc.rna_seq.transcriptome.gdc_realn.bam 10606758381 BAM transcriptome harmonized CPTAC3 69f0fbf5-826b-4938-9ba0-770b12a3bbb8 d4a908578b038e8f75a1d6a337927ed7 { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor' } +C3L-05225.RNA-Seq.chimeric.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 266f3d41-bfe6-4693-9e3e-aec05cd5071f.rna_seq.chimeric.gdc_realn.bam 31339617 BAM chimeric harmonized CPTAC3 425a7e66-8c7c-4f51-9f67-19d81880a742 b3bea689129dfa81e29a1ccfafd934b8 { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05225.RNA-Seq.chimeric.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 31a4ab7e-70f8-45e0-905f-622231ee5665.rna_seq.chimeric.gdc_realn.bam 30139205 BAM chimeric harmonized CPTAC3 7585ca0c-9528-4e92-b7f8-463da4f28e74 af7fb669a052ddea3ea3061470110055 { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor' } +C3L-05225.RNA-Seq.genomic.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 266f3d41-bfe6-4693-9e3e-aec05cd5071f.rna_seq.genomic.gdc_realn.bam 7620994435 BAM genomic harmonized CPTAC3 10bb42a9-074a-4f9c-8da1-2d8a0bfaf4b8 028550ed221cc9d2db6fbdc68cb5f11c { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05225.RNA-Seq.genomic.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 31a4ab7e-70f8-45e0-905f-622231ee5665.rna_seq.genomic.gdc_realn.bam 7706301994 BAM genomic harmonized CPTAC3 6f7a3fdc-c20e-4e04-97fb-ffba0d50e074 a07f8d9974f57efe77c8bad433e21ec9 { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor' } +C3L-05225.RNA-Seq.R1_L001.A C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 200505_UNC32-K00270_0246_BHH5F5BBXY_TAATACAG-ATATTCAC_S4_L001_R1_001.fastq.gz 3442419307 FASTQ R1_L001 unaligned CPTAC3 63c26280-83e5-40ef-90fa-dea67fca8d54 3b585578bc90a18e52d864419d0879a3 { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-05225.RNA-Seq.R1_L003.T C3L-05225 LSCC RNA-Seq tumor CPT0296570009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AAGATACT-ACTTACAT_S11_L003_R1_001.fastq.gz 3827548599 FASTQ R1_L003 unaligned CPTAC3 e06570ec-7adf-4b8e-80ff-f70a7eec89b0 67663c6fefe4d4073c1a73b5702e5328 { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-05225.RNA-Seq.R2_L001.A C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 200505_UNC32-K00270_0246_BHH5F5BBXY_TAATACAG-ATATTCAC_S4_L001_R2_001.fastq.gz 4166052663 FASTQ R2_L001 unaligned CPTAC3 2656afbf-4bb5-47df-882d-696754d8467c 974a43467ca2811f8eaa5eb525612995 { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3L-05225.RNA-Seq.R2_L003.T C3L-05225 LSCC RNA-Seq tumor CPT0296570009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AAGATACT-ACTTACAT_S11_L003_R2_001.fastq.gz 4049671016 FASTQ R2_L003 unaligned CPTAC3 383d18bb-9260-4acc-a5b3-6e80e90d638c 0ae1740c194e6d5d1b2ea84ef1b0057c { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-05225.RNA-Seq.transcriptome.A.hg38 C3L-05225 LSCC RNA-Seq tissue_normal CPT0296620009 266f3d41-bfe6-4693-9e3e-aec05cd5071f.rna_seq.transcriptome.gdc_realn.bam 8796588183 BAM transcriptome harmonized CPTAC3 998484b4-3146-4a19-a297-16933f297b27 c4d81da0bbf2bb567b6b69ad41fce4d5 { 'aliquot_tag': 'ALQ_9feb5183', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05225.RNA-Seq.transcriptome.T.hg38 C3L-05225 LSCC RNA-Seq tumor CPT0296570009 31a4ab7e-70f8-45e0-905f-622231ee5665.rna_seq.transcriptome.gdc_realn.bam 11963071123 BAM transcriptome harmonized CPTAC3 612a7d94-58bb-4ea2-886b-5361aa6d12da 70c812d55a896c700d3e7579a006bb8c { 'aliquot_tag': 'ALQ_d19fac5d', 'gdc_sample_type': 'Primary Tumor' } C3L-05225.WGS.N C3L-05225 LSCC WGS blood_normal CPT0296690002 CPT0296690002.WholeGenome.RP-2158.bam 24312447365 BAM aligned CPTAC3 a82d3175-e8fd-49cc-9690-82aaf509900c f7a0efcc5025ea374d50d01484a13186 { 'aliquot_tag': 'ALQ_7fe9b91a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05225.WGS.N C3L-05225 LSCC WGS blood_normal CPT0296690002 CPT0296690002.WholeGenome.RP-2158.bam 24349130461 BAM aligned CPTAC3 8b8d2e54-0b9f-4416-9222-064df84934f2 8f36aba81e2c64ba144afde152f85b32 { 'aliquot_tag': 'ALQ_7fe9b91a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05225.WGS.N.hg38 C3L-05225 LSCC WGS blood_normal CPT0296690002 3b73345c-6a2e-4042-8cc9-0e55329d9058_wgs_gdc_realn.bam 72783765413 BAM harmonized CPTAC3 ac63ee7c-9f5c-4d1d-a73d-bebc58c33bc9 2b73c8fd0115445950fac62db5f6bce3 { 'aliquot_tag': 'ALQ_7fe9b91a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -17030,11 +18018,11 @@ C3L-05239.MethArray.Green.T C3L-05239 GBM Methylation Array tumor CPT0346710006 C3L-05239.MethArray.Red.T C3L-05239 GBM Methylation Array tumor CPT0346710006 204930640083_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 22d11f1e-80cd-4521-84c0-8cf623ec19fc 81df0570b493ef831814ea12a6fb2176 { 'aliquot_tag': 'ALQ_fd6e4f5', 'gdc_sample_type': 'Primary Tumor' } C3L-05239.miRNA-Seq.T C3L-05239 GBM miRNA-Seq tumor CPT0346710009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTTGA_S23_L007_R1_001.unaln.bam 218458045 BAM unaligned CPTAC3 9dea0013-93dc-4c87-bdc8-bc98d18238bf 4089d0052e0ac168b4411703515ed4b0 { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor' } C3L-05239.miRNA-Seq.T.hg38 C3L-05239 GBM miRNA-Seq tumor CPT0346710009 bc919f06-ae10-44e3-8218-f88fb03e2a9d_mirnaseq_gdc_realn.bam 251913789 BAM harmonized CPTAC3 a5ad09b9-b8a1-4f61-9ab2-50d7e363db09 806b9d9260508fd091e4716b54f94152 { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor' } -C3L-05239.RNA-Seq.chimeric.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 271906e3-d36e-43ec-a09c-37cb9f3a95d5.rna_seq.chimeric.gdc_realn.bam 72950232 BAM chimeric harmonized CPTAC3 89e775ff-9a60-46c7-9427-004804998290 4ab33daaa94b18ad816b996feced04c2 { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor' } -C3L-05239.RNA-Seq.genomic.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 271906e3-d36e-43ec-a09c-37cb9f3a95d5.rna_seq.genomic.gdc_realn.bam 7849393604 BAM genomic harmonized CPTAC3 27038062-dcbd-46a1-9d52-714e8b86af6e 3899a0d56726c11ef1b84f51ea93021f { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor' } -C3L-05239.RNA-Seq.R1_L001.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3756355481 FASTQ R1_L001 unaligned CPTAC3 8161f3a1-1b1a-442f-aaf3-faabd976c99a 017652ccbf783557146fac20f6b01bfe { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor' } -C3L-05239.RNA-Seq.R2_L001.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 4279749843 FASTQ R2_L001 unaligned CPTAC3 b2cc1d59-536e-4c59-89df-f6808282e91f caab0a5abb6f92364ade534073d9ad61 { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor' } -C3L-05239.RNA-Seq.transcriptome.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 271906e3-d36e-43ec-a09c-37cb9f3a95d5.rna_seq.transcriptome.gdc_realn.bam 8369304175 BAM transcriptome harmonized CPTAC3 5d638754-b33f-4154-9c24-7f91b8592b27 25857b4e86dec817eae764884dfdb3a3 { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor' } +C3L-05239.RNA-Seq.chimeric.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 2a4316c2-b109-420e-be04-8052c3d4a9a3.rna_seq.chimeric.gdc_realn.bam 72939404 BAM chimeric harmonized CPTAC3 95f1ed81-a1da-4e5b-801e-a17a0936856b c4bd68e2257069797b3388305021cd87 { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor' } +C3L-05239.RNA-Seq.genomic.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 2a4316c2-b109-420e-be04-8052c3d4a9a3.rna_seq.genomic.gdc_realn.bam 7856464192 BAM genomic harmonized CPTAC3 3de099eb-d3fb-47b0-9fb6-955a5c291dcb a4e9a6a99f6a120d707794d21b0489af { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor' } +C3L-05239.RNA-Seq.R1_L001.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3756355481 FASTQ R1_L001 unaligned CPTAC3 8161f3a1-1b1a-442f-aaf3-faabd976c99a 017652ccbf783557146fac20f6b01bfe { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-05239.RNA-Seq.R2_L001.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 4279749843 FASTQ R2_L001 unaligned CPTAC3 b2cc1d59-536e-4c59-89df-f6808282e91f caab0a5abb6f92364ade534073d9ad61 { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-05239.RNA-Seq.transcriptome.T.hg38 C3L-05239 GBM RNA-Seq tumor CPT0346710009 2a4316c2-b109-420e-be04-8052c3d4a9a3.rna_seq.transcriptome.gdc_realn.bam 9662306410 BAM transcriptome harmonized CPTAC3 80694eea-cf08-49d6-8b87-1967867fb091 a4367b85c6c52c5cec2623f3e0ce71a6 { 'aliquot_tag': 'ALQ_9f69f964', 'gdc_sample_type': 'Primary Tumor' } C3L-05239.WGS.N C3L-05239 GBM WGS blood_normal CPT0346770002 CPT0346770002.WholeGenome.RP-2158.bam 24306484177 BAM aligned CPTAC3 f50882a9-ba11-46d8-8ae1-b3db9fe73ca6 9e50f542d916427f958a5d28b4fafbd1 { 'aliquot_tag': 'ALQ_87fbd54c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05239.WGS.N.hg38 C3L-05239 GBM WGS blood_normal CPT0346770002 445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wgs_gdc_realn.bam 69573503614 BAM harmonized CPTAC3 74558bd0-2f33-412a-acc6-0274e7abf989 592e4c0fb664a87b17148297475e7236 { 'aliquot_tag': 'ALQ_87fbd54c', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05239.WGS.T C3L-05239 GBM WGS tumor CPT0346710006 CPT0346710006.WholeGenome.RP-2158.bam 23404612085 BAM aligned CPTAC3 5f728e2a-492a-4fd8-b33a-3cfd30bba9cf 0e484ffc3e5d09555523e7ddc81bd1f4 { 'aliquot_tag': 'ALQ_fd6e4f5', 'gdc_sample_type': 'Primary Tumor' } @@ -17047,130 +18035,209 @@ C3L-05313.MethArray.Green.Tbm C3L-05313 AML Methylation Array tumor_bone_marrow C3L-05313.MethArray.Red.Tbm C3L-05313 AML Methylation Array tumor_bone_marrow CPT0339580002 205549600088_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 f5035698-fc64-4ca3-b505-56bed0caa3a2 875dc99237001389f8a6b13cb0459a0b { 'aliquot_tag': 'ALQ_b4ee9a66', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05313.miRNA-Seq.Tbm C3L-05313 AML miRNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCGAAG_S31_L007_R1_001.unaln.bam 405396432 BAM unaligned CPTAC3 ec6361e3-7777-40c7-8e73-38739400b11a 9f0e2b6ad6e42f549b2c3911a0b3dd36 { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05313.miRNA-Seq.Tbm.hg38 C3L-05313 AML miRNA-Seq tumor_bone_marrow CPT0339590002 97ad778f-cd64-4652-a373-63179a34d3c2_mirnaseq_gdc_realn.bam 437640768 BAM harmonized CPTAC3 0873d890-6ef0-4f16-a8b1-bc97f7c23218 7d6ac3aca35c72a47aba91c9ee35ea83 { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05313.RNA-Seq.chimeric.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.chimeric.gdc_realn.bam 132251437 BAM chimeric harmonized CPTAC3 b388b094-9520-4834-9553-986b08ee9592 d3a19b006f15646bd32d0a6e126a4929 { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05313.RNA-Seq.genomic.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.genomic.gdc_realn.bam 8552882138 BAM genomic harmonized CPTAC3 9da0a924-2012-45f6-a2ec-f58170dd4a24 3dc2501d4e8497be9534feb523f89bdc { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05313.RNA-Seq.R1_L004.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R1_001.fastq.gz 4426516378 FASTQ R1_L004 unaligned CPTAC3 88212c9f-4a92-44be-acaa-3ff7e515ee07 78ad3daa211f11245e891c423156188e { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05313.RNA-Seq.R2_L004.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R2_001.fastq.gz 4697624199 FASTQ R2_L004 unaligned CPTAC3 a0bd7490-d7d8-4aa5-b785-90cb8408f484 24fe52482ff314f4574b6ddc268e6e95 { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05313.RNA-Seq.transcriptome.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.transcriptome.gdc_realn.bam 8635622276 BAM transcriptome harmonized CPTAC3 560bd925-2758-4ffd-bbee-0394981faf76 be541e1f856b6f9b94ee8efc52a4985a { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05313.RNA-Seq.chimeric.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.chimeric.gdc_realn.bam 132251437 BAM chimeric harmonized CPTAC3 8f20a383-6ed9-4981-bac6-6463b6516b12 d3a19b006f15646bd32d0a6e126a4929 { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05313.RNA-Seq.genomic.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.genomic.gdc_realn.bam 8552882138 BAM genomic harmonized CPTAC3 01fb2668-aa9e-49e2-ae91-f8b93af2c23e 3dc2501d4e8497be9534feb523f89bdc { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05313.RNA-Seq.R1_L004.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R1_001.fastq.gz 4426516378 FASTQ R1_L004 unaligned CPTAC3 88212c9f-4a92-44be-acaa-3ff7e515ee07 78ad3daa211f11245e891c423156188e { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-05313.RNA-Seq.R2_L004.Tbm C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCGATATC-ACACGAGT_S16_L004_R2_001.fastq.gz 4697624199 FASTQ R2_L004 unaligned CPTAC3 a0bd7490-d7d8-4aa5-b785-90cb8408f484 24fe52482ff314f4574b6ddc268e6e95 { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-05313.RNA-Seq.transcriptome.Tbm.hg38 C3L-05313 AML RNA-Seq tumor_bone_marrow CPT0339590002 f6e33cc9-ab72-4fc1-ae0c-d03fc5be6443.rna_seq.transcriptome.gdc_realn.bam 8635622276 BAM transcriptome harmonized CPTAC3 08410444-13a8-49dc-a325-8bfdd4caf61a be541e1f856b6f9b94ee8efc52a4985a { 'aliquot_tag': 'ALQ_898eb3d6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05313.WGS.Tbm C3L-05313 AML WGS tumor_bone_marrow CPT0339580002 CPT0339580002.WholeGenome.RP-2158.bam 68561792756 BAM aligned CPTAC3 4faf5877-daea-4066-b364-46dbd29478c8 d3d7ef88749ad4f9a16be96f2061b2f5 { 'aliquot_tag': 'ALQ_b4ee9a66', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05313.WGS.Tbm.hg38 C3L-05313 AML WGS tumor_bone_marrow CPT0339580002 3c8e4bcf-3953-4404-8302-d3372072fe80_wgs_gdc_realn.bam 203810420083 BAM harmonized CPTAC3 7195342a-8050-4081-a400-40b6a592fa40 bb992cccaeea48c1b6c56df5cefe3ce0 { 'aliquot_tag': 'ALQ_b4ee9a66', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05313.WXS.Nbc C3L-05313 AML WXS buccal_normal CPT0339550004 CPT0339550004.WholeExome.RP-1303.bam 28056169993 BAM aligned CPTAC3 df53743f-987e-4635-8ca7-06f2645d1014 db1d4308d565868dc7f139df2106b174 { 'aliquot_tag': 'ALQ_a51dfbe2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05313.WXS.Nbc.hg38 C3L-05313 AML WXS buccal_normal CPT0339550004 fa3f28fc-ae10-4dae-af06-1d3e70583d71_wxs_gdc_realn.bam 38503948892 BAM harmonized CPTAC3 ae1d8fd4-9a96-4d17-a889-ded2269865bf a3ca843bf761a51e9169178aba36c076 { 'aliquot_tag': 'ALQ_a51dfbe2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05313.WXS.Tbm C3L-05313 AML WXS tumor_bone_marrow CPT0339580002 CPT0339580002.WholeExome.RP-1303.bam 20636515890 BAM aligned CPTAC3 52be19a7-dec7-4d31-84fe-642df5fe9e13 220618f88b85d67754b6de1b064f279e { 'aliquot_tag': 'ALQ_b4ee9a66', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05313.WXS.Tbm.hg38 C3L-05313 AML WXS tumor_bone_marrow CPT0339580002 3c8e4bcf-3953-4404-8302-d3372072fe80_wxs_gdc_realn.bam 28091554825 BAM harmonized CPTAC3 9adefebd-3464-4c31-985f-06e98af14df1 b5cbe9a44eeb62a2d90cc99ded158be4 { 'aliquot_tag': 'ALQ_b4ee9a66', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05315.MethArray.Green.Tpb C3L-05315 AML Methylation Array tumor_peripheral_blood CPT0340590002 205705520128_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 375cb4e6-c8ce-4942-ba76-7b9b5ed427d0 acd1f6621d8d3a92d34d7a14a77cba18 { 'aliquot_tag': 'ALQ_16d3ff1c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05315.MethArray.Red.Tpb C3L-05315 AML Methylation Array tumor_peripheral_blood CPT0340590002 205705520128_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 556a0fa2-2bbf-4ead-8a50-aa512ff09985 ff5a5ddfe9dd66ef2a153f4a1325e6d3 { 'aliquot_tag': 'ALQ_16d3ff1c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05315.miRNA-Seq.Tpb C3L-05315 AML miRNA-Seq tumor_peripheral_blood CPT0340600002 220125_UNC32-K00270_0311_AHMNYYBBXY_TTAGGC_S23_L001_R1_001.unaln.bam 296859760 BAM unaligned CPTAC3 0b8d5af6-c18f-46df-9654-f9770f0b9762 aba7c575ae64026ecc648e8f2b374ec3 { 'aliquot_tag': 'ALQ_9d57efc3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05315.RNA-Seq.R1_L008.Tpb C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 211207_UNC32-K00270_0305_AHMW37BBXY_GGTACCTT-AAGACGTC_S32_L008_R1_001.fastq.gz 3912388792 FASTQ R1_L008 unaligned CPTAC3 20e0a682-ec84-4c52-85ca-70f82abf6c2a f5fddb98790cb8c3e8415f697ebdf63a { 'aliquot_tag': 'ALQ_9d57efc3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05315.RNA-Seq.R2_L008.Tpb C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 211207_UNC32-K00270_0305_AHMW37BBXY_GGTACCTT-AAGACGTC_S32_L008_R2_001.fastq.gz 4291270091 FASTQ R2_L008 unaligned CPTAC3 19b29761-1f21-4660-80e5-6d704f08a5be bda24fd7bb51da710a2eaa4ec85c3bce { 'aliquot_tag': 'ALQ_9d57efc3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05315.miRNA-Seq.Tpb.hg38 C3L-05315 AML miRNA-Seq tumor_peripheral_blood CPT0340600002 4b5a3b0f-0ebb-49b7-abb7-dbb8588847c5_mirnaseq_gdc_realn.bam 319473706 BAM harmonized CPTAC3 4f5cd1ae-07ec-4732-b440-7aee2e2c63b9 3914eab86296a1328bb8a36249d88835 { 'aliquot_tag': 'ALQ_9d57efc3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05315.RNA-Seq.chimeric.Tpb.hg38 C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 8c0d49c2-1835-4af9-832f-2f7d15678bbc.rna_seq.chimeric.gdc_realn.bam 754850786 BAM chimeric harmonized CPTAC3 82e0256e-d5d9-4e8a-9969-3ca470cc49b7 f3163b2a383d3f09148fd7c55fe77b3e { 'aliquot_tag': 'ALQ_9d57efc3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05315.RNA-Seq.genomic.Tpb.hg38 C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 8c0d49c2-1835-4af9-832f-2f7d15678bbc.rna_seq.genomic.gdc_realn.bam 8034997757 BAM genomic harmonized CPTAC3 585f3edb-394d-4f10-a04a-f82d4b64a27a 024d972afdbc02e96d3e170310fb6d96 { 'aliquot_tag': 'ALQ_9d57efc3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05315.RNA-Seq.R1_L008.Tpb C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 211207_UNC32-K00270_0305_AHMW37BBXY_GGTACCTT-AAGACGTC_S32_L008_R1_001.fastq.gz 3912388792 FASTQ R1_L008 unaligned CPTAC3 20e0a682-ec84-4c52-85ca-70f82abf6c2a f5fddb98790cb8c3e8415f697ebdf63a { 'aliquot_tag': 'ALQ_9d57efc3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L008' } +C3L-05315.RNA-Seq.R2_L008.Tpb C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 211207_UNC32-K00270_0305_AHMW37BBXY_GGTACCTT-AAGACGTC_S32_L008_R2_001.fastq.gz 4291270091 FASTQ R2_L008 unaligned CPTAC3 19b29761-1f21-4660-80e5-6d704f08a5be bda24fd7bb51da710a2eaa4ec85c3bce { 'aliquot_tag': 'ALQ_9d57efc3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L008' } +C3L-05315.RNA-Seq.transcriptome.Tpb.hg38 C3L-05315 AML RNA-Seq tumor_peripheral_blood CPT0340600002 8c0d49c2-1835-4af9-832f-2f7d15678bbc.rna_seq.transcriptome.gdc_realn.bam 7619133973 BAM transcriptome harmonized CPTAC3 f784f1be-5664-4cc8-a4c1-8f7a3c1a5795 7004d8e68ece1e533b8c0ca95c6e06d5 { 'aliquot_tag': 'ALQ_9d57efc3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05315.WGS.Tpb C3L-05315 AML WGS tumor_peripheral_blood CPT0340590002 CPT0340590002.WholeGenome.RP-2158.bam 54765078682 BAM aligned CPTAC3 95c8c488-a602-4043-9590-6d33e89a7a75 5d22fba6523678c132c136a0330ec10c { 'aliquot_tag': 'ALQ_16d3ff1c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05315.WGS.Tpb.hg38 C3L-05315 AML WGS tumor_peripheral_blood CPT0340590002 32a00e9b-b7e7-4976-bf87-99ba02a48559_wgs_gdc_realn.bam 158756562946 BAM harmonized CPTAC3 586eec3c-85ac-444a-bac0-6663471a2ed1 348a46f92da76f44210dc05c8e0ee47e { 'aliquot_tag': 'ALQ_16d3ff1c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05315.WXS.Nbc C3L-05315 AML WXS buccal_normal CPT0340560004 CPT0340560004.WholeExome.RP-1303.bam 20309279475 BAM aligned CPTAC3 cf5c3c46-0a39-4c83-95bb-db37ade136e2 2a4ee0a9c9ae7bbcbb7b430f7cb88685 { 'aliquot_tag': 'ALQ_7de0cdf8', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05315.WXS.Nbc.hg38 C3L-05315 AML WXS buccal_normal CPT0340560004 e09622f7-f63a-4a40-ad7e-fef31bbcbb83_wxs_gdc_realn.bam 81819332650 BAM harmonized CPTAC3 a6f0dd60-9ac1-43b3-b30e-7b75c626e851 58f70b5d1c89176afff361cd230e2d0d { 'aliquot_tag': 'ALQ_7de0cdf8', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05315.WXS.Tpb C3L-05315 AML WXS tumor_peripheral_blood CPT0340590002 CPT0340590002.WholeExome.RP-1303.bam 24482817213 BAM aligned CPTAC3 ba523803-92b1-42b7-a923-dce29d55cfbe 15d69be732dc3b212e285d13aeefcfa0 { 'aliquot_tag': 'ALQ_16d3ff1c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05315.WXS.Tpb.hg38 C3L-05315 AML WXS tumor_peripheral_blood CPT0340590002 32a00e9b-b7e7-4976-bf87-99ba02a48559_wxs_gdc_realn.bam 33836991288 BAM harmonized CPTAC3 312fb399-0a32-4a1e-b744-317107e70d5e 4f9f550db858255dbbb33d3077c7cc1f { 'aliquot_tag': 'ALQ_16d3ff1c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05316.MethArray.Green.Tbm C3L-05316 AML Methylation Array tumor_bone_marrow CPT0339720002 204930640111_R03C01_Grn.idat 13677960 IDAT Green NA CPTAC3 ab388d39-cf07-44f9-a049-e3aab0950dbe 7aa07b139acac5e6a7025791bf28d61f { 'aliquot_tag': 'ALQ_b39623cc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05316.MethArray.Red.Tbm C3L-05316 AML Methylation Array tumor_bone_marrow CPT0339720002 204930640111_R03C01_Red.idat 13677960 IDAT Red NA CPTAC3 a95b2bd4-a399-4221-9a96-5c73568e04b5 f398698eb222117c15c81d9a7d2c71d1 { 'aliquot_tag': 'ALQ_b39623cc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05316.miRNA-Seq.Tbm C3L-05316 AML miRNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC31-K00269_0297_AHKCFKBBXY_TCGGCA_S32_L007_R1_001.unaln.bam 319441133 BAM unaligned CPTAC3 e792ac23-2179-4493-bf02-860f29c3f9df 8d25b3d2cc84f5c063059137d1bf3a7c { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05316.miRNA-Seq.Tbm.hg38 C3L-05316 AML miRNA-Seq tumor_bone_marrow CPT0339730002 33a3327f-497f-4099-84cc-5e62bf9f79a9_mirnaseq_gdc_realn.bam 343653286 BAM harmonized CPTAC3 fe008aa2-08c2-4097-a535-0493402373b2 597dab224d9cc0c7d5d90da2864f7cde { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05316.RNA-Seq.chimeric.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 d824b0a1-6c8c-4b97-8886-fbb36bffa7cc.rna_seq.chimeric.gdc_realn.bam 102924953 BAM chimeric harmonized CPTAC3 035c740b-1262-4ed4-b80e-b43e7a7ae48c 8d7b82c6ce7e8e023acc6b3cc6073437 { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05316.RNA-Seq.genomic.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 d824b0a1-6c8c-4b97-8886-fbb36bffa7cc.rna_seq.genomic.gdc_realn.bam 8275329891 BAM genomic harmonized CPTAC3 16ff463e-0b21-4752-a0c9-870ede4df1ba a799fd8f729850108a00d12ac164086c { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05316.RNA-Seq.R1_L004.Tbm C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTAGCGCT-GTGTAGAC_S14_L004_R1_001.fastq.gz 4194153238 FASTQ R1_L004 unaligned CPTAC3 fd3abe1d-c01d-4172-8a82-79a924db13a6 a1a126db9664b12713254c78b5d63eff { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05316.RNA-Seq.R2_L004.Tbm C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTAGCGCT-GTGTAGAC_S14_L004_R2_001.fastq.gz 4492439260 FASTQ R2_L004 unaligned CPTAC3 306fd8bf-45ab-4a9a-abb2-e0bf1cd11927 b0cbb0f05f7b73b94d7ee9142ef91833 { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05316.RNA-Seq.transcriptome.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 d824b0a1-6c8c-4b97-8886-fbb36bffa7cc.rna_seq.transcriptome.gdc_realn.bam 7772530485 BAM transcriptome harmonized CPTAC3 d9e1fef3-383b-49f7-ba4b-a7cc45b0db2f 1a0ac41e563b078507c919ebd901e0cd { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05316.RNA-Seq.chimeric.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 26f9e58f-921a-4677-bda2-ee780d0b0573.rna_seq.chimeric.gdc_realn.bam 102916973 BAM chimeric harmonized CPTAC3 9cffd4b8-254c-4584-b3cc-8cf1aad9d13f f863acec2f90f42f20a2cd9dc32a3a3d { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05316.RNA-Seq.genomic.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 26f9e58f-921a-4677-bda2-ee780d0b0573.rna_seq.genomic.gdc_realn.bam 8282260950 BAM genomic harmonized CPTAC3 6409e8f4-392d-4b76-8619-83cc5ff8ad37 4de76a0ac1e7d21296f5314eab2d45ec { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05316.RNA-Seq.R1_L004.Tbm C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTAGCGCT-GTGTAGAC_S14_L004_R1_001.fastq.gz 4194153238 FASTQ R1_L004 unaligned CPTAC3 fd3abe1d-c01d-4172-8a82-79a924db13a6 a1a126db9664b12713254c78b5d63eff { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-05316.RNA-Seq.R2_L004.Tbm C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTAGCGCT-GTGTAGAC_S14_L004_R2_001.fastq.gz 4492439260 FASTQ R2_L004 unaligned CPTAC3 306fd8bf-45ab-4a9a-abb2-e0bf1cd11927 b0cbb0f05f7b73b94d7ee9142ef91833 { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-05316.RNA-Seq.transcriptome.Tbm.hg38 C3L-05316 AML RNA-Seq tumor_bone_marrow CPT0339730002 26f9e58f-921a-4677-bda2-ee780d0b0573.rna_seq.transcriptome.gdc_realn.bam 8936707767 BAM transcriptome harmonized CPTAC3 b1de04c8-8ff0-4625-9b16-c140ad38a048 10923b07500a6ee6d16b0e6818aafd9b { 'aliquot_tag': 'ALQ_8ef60a7c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05316.WGS.Tbm C3L-05316 AML WGS tumor_bone_marrow CPT0339720002 CPT0339720002.WholeGenome.RP-2158.bam 40220969326 BAM aligned CPTAC3 7ecb1ea9-cc31-45a7-ba85-5778952d3db6 eef3a35ef4416ec8460f1705529374c9 { 'aliquot_tag': 'ALQ_b39623cc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05316.WGS.Tbm.hg38 C3L-05316 AML WGS tumor_bone_marrow CPT0339720002 f0b9d521-c9f4-4f90-9d64-6197ac84f000_wgs_gdc_realn.bam 121441730666 BAM harmonized CPTAC3 70d364ce-ac03-46ec-973b-fe5232a944e6 dc4fbadb83c0799bd494174059445963 { 'aliquot_tag': 'ALQ_b39623cc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05316.WXS.Nbc C3L-05316 AML WXS buccal_normal CPT0339690004 CPT0339690004.WholeExome.RP-1303.bam 29875616363 BAM aligned CPTAC3 08f2d4a3-e94e-4fc6-9a21-483a0700ac57 a6144baaa8ccb24f33505244bbe67185 { 'aliquot_tag': 'ALQ_e679644d', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05316.WXS.Nbc.hg38 C3L-05316 AML WXS buccal_normal CPT0339690004 fd86394a-4e44-4f82-a775-dc9e33f61b0a_wxs_gdc_realn.bam 40974285867 BAM harmonized CPTAC3 955c07ff-fa9a-4d95-b6f6-325d943e8ffb f2bf76adfc9ead78ea403242cdfe9b3c { 'aliquot_tag': 'ALQ_e679644d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05316.WXS.Tbm C3L-05316 AML WXS tumor_bone_marrow CPT0339720002 CPT0339720002.WholeExome.RP-1303.bam 25609332514 BAM aligned CPTAC3 799df73d-a072-436c-8473-94cece4ac4ce dd475d6254de0f6b23bddf8f1779590d { 'aliquot_tag': 'ALQ_b39623cc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05316.WXS.Tbm.hg38 C3L-05316 AML WXS tumor_bone_marrow CPT0339720002 f0b9d521-c9f4-4f90-9d64-6197ac84f000_wxs_gdc_realn.bam 35021016231 BAM harmonized CPTAC3 b48e68e0-d386-4275-a3f4-00e3724bdf80 1bff0c8e6be27122e79f53eed4bf0cf8 { 'aliquot_tag': 'ALQ_b39623cc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05317.MethArray.Green.Tpb C3L-05317 AML Methylation Array tumor_peripheral_blood CPT0340740002 205987780094_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 033a65d6-1238-4491-837f-9b57d17f9dd1 0f53d0ff24009d1534b1352a02605e7a { 'aliquot_tag': 'ALQ_a38b9aa6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05317.MethArray.Red.Tpb C3L-05317 AML Methylation Array tumor_peripheral_blood CPT0340740002 205987780094_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 3e0dc305-b8a8-4ca8-bb66-8bdccfd0bbd8 161570b33c3449204104eab26657b1e5 { 'aliquot_tag': 'ALQ_a38b9aa6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05317.miRNA-Seq.Tpb C3L-05317 AML miRNA-Seq tumor_peripheral_blood CPT0340750002 220125_UNC32-K00270_0311_AHMNYYBBXY_TAATCG_S15_L001_R1_001.unaln.bam 242521533 BAM unaligned CPTAC3 06c4f3af-90f4-47ff-8a6a-86eea367d579 f31255aaa8f5f6f80732986225f5522c { 'aliquot_tag': 'ALQ_9eebb316', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05317.RNA-Seq.R1_L005.Tpb C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 211207_UNC32-K00270_0305_AHMW37BBXY_CTCTCGTC-TATAACCT_S18_L005_R1_001.fastq.gz 3995264696 FASTQ R1_L005 unaligned CPTAC3 96cae845-892d-45b4-82dd-abbb829ac7a0 ff984bc46734b006c6b04503197ad7df { 'aliquot_tag': 'ALQ_9eebb316', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05317.RNA-Seq.R2_L005.Tpb C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 211207_UNC32-K00270_0305_AHMW37BBXY_CTCTCGTC-TATAACCT_S18_L005_R2_001.fastq.gz 4337475499 FASTQ R2_L005 unaligned CPTAC3 046e7c55-40fa-4464-8f56-7d45d33a0f08 f0d0e70bf20853284496ba175dd1c031 { 'aliquot_tag': 'ALQ_9eebb316', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05317.miRNA-Seq.Tpb.hg38 C3L-05317 AML miRNA-Seq tumor_peripheral_blood CPT0340750002 2cf8ddc8-c81d-46f9-82bb-635e71d8ee1c_mirnaseq_gdc_realn.bam 266037448 BAM harmonized CPTAC3 8ec7acab-fc2f-420b-8bd0-eb65f0d430b5 75235f27fbcffd9a62afe2e8929cf2d5 { 'aliquot_tag': 'ALQ_9eebb316', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05317.RNA-Seq.chimeric.Tpb.hg38 C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 069a9872-3d96-4273-add0-00ec36972eed.rna_seq.chimeric.gdc_realn.bam 933603543 BAM chimeric harmonized CPTAC3 c8816a66-bfe1-4288-a097-935aa38db021 94800c42b44d4276cec154881cb36bbe { 'aliquot_tag': 'ALQ_9eebb316', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05317.RNA-Seq.genomic.Tpb.hg38 C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 069a9872-3d96-4273-add0-00ec36972eed.rna_seq.genomic.gdc_realn.bam 8473288495 BAM genomic harmonized CPTAC3 aa6ace1f-f6bc-4dbc-a18b-29aaef0ee46e be085fa8fe49fadf8fff506be31dbafc { 'aliquot_tag': 'ALQ_9eebb316', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05317.RNA-Seq.R1_L005.Tpb C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 211207_UNC32-K00270_0305_AHMW37BBXY_CTCTCGTC-TATAACCT_S18_L005_R1_001.fastq.gz 3995264696 FASTQ R1_L005 unaligned CPTAC3 96cae845-892d-45b4-82dd-abbb829ac7a0 ff984bc46734b006c6b04503197ad7df { 'aliquot_tag': 'ALQ_9eebb316', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L005' } +C3L-05317.RNA-Seq.R2_L005.Tpb C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 211207_UNC32-K00270_0305_AHMW37BBXY_CTCTCGTC-TATAACCT_S18_L005_R2_001.fastq.gz 4337475499 FASTQ R2_L005 unaligned CPTAC3 046e7c55-40fa-4464-8f56-7d45d33a0f08 f0d0e70bf20853284496ba175dd1c031 { 'aliquot_tag': 'ALQ_9eebb316', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L005' } +C3L-05317.RNA-Seq.transcriptome.Tpb.hg38 C3L-05317 AML RNA-Seq tumor_peripheral_blood CPT0340750002 069a9872-3d96-4273-add0-00ec36972eed.rna_seq.transcriptome.gdc_realn.bam 8102540872 BAM transcriptome harmonized CPTAC3 0f59a6e4-0545-4257-9910-7cf4752abab1 87f11cf8d02e1d69fc4fe904ce1dce98 { 'aliquot_tag': 'ALQ_9eebb316', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05317.WGS.Nbc C3L-05317 AML WGS buccal_normal CPT0340710002 CPT0340710002.WholeGenome.RP-2158.bam 52305022243 BAM aligned CPTAC3 e71138fc-526c-4c9b-aa84-624078b2c219 3cb65ef5b49cddf5cce67bed399f401e { 'aliquot_tag': 'ALQ_6b6b15d6', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05317.WGS.Nbc.hg38 C3L-05317 AML WGS buccal_normal CPT0340710002 564be77b-0307-454f-9977-800641a0f88f_wgs_gdc_realn.bam 161842268298 BAM harmonized CPTAC3 8169035d-610e-4406-a2bf-0252251f2300 ea08ead4e27679e3407eafc533134b50 { 'aliquot_tag': 'ALQ_6b6b15d6', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05317.WGS.Tpb C3L-05317 AML WGS tumor_peripheral_blood CPT0340740002 CPT0340740002.WholeGenome.RP-2158.bam 44040100557 BAM aligned CPTAC3 49c0b028-777b-474d-95c1-419c4a83cfd9 3cf25d6f9eb7d61b2b7bc2e0bab5647f { 'aliquot_tag': 'ALQ_a38b9aa6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05317.WGS.Tpb.hg38 C3L-05317 AML WGS tumor_peripheral_blood CPT0340740002 d3dfdac2-8140-4fde-b2b4-89b2a9d8cb5a_wgs_gdc_realn.bam 135046354348 BAM harmonized CPTAC3 106a273c-f44a-47df-b769-0f5969ede688 737085d327a22bacd77586207f7d24cd { 'aliquot_tag': 'ALQ_a38b9aa6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05317.WXS.Nbc C3L-05317 AML WXS buccal_normal CPT0340710002 CPT0340710002.WholeExome.RP-1303.bam 30347765365 BAM aligned CPTAC3 a5fd0121-ceca-4db1-b983-e216ad1663a4 0041eb1283aa96aed7d611fe1f0d9bdb { 'aliquot_tag': 'ALQ_6b6b15d6', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05317.WXS.Nbc.hg38 C3L-05317 AML WXS buccal_normal CPT0340710002 564be77b-0307-454f-9977-800641a0f88f_wxs_gdc_realn.bam 42041208181 BAM harmonized CPTAC3 a46cc866-2de4-46d9-b8dd-88e6b91c83f5 76940f07836a1341ea3aa7a8e15281dd { 'aliquot_tag': 'ALQ_6b6b15d6', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05317.WXS.Tpb C3L-05317 AML WXS tumor_peripheral_blood CPT0340740002 CPT0340740002.WholeExome.RP-1303.bam 26617492851 BAM aligned CPTAC3 678c17e3-18fc-47da-9a98-01d6aca93136 8f333e389b8c371a0012e8080e14acba { 'aliquot_tag': 'ALQ_a38b9aa6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05317.WXS.Tpb.hg38 C3L-05317 AML WXS tumor_peripheral_blood CPT0340740002 d3dfdac2-8140-4fde-b2b4-89b2a9d8cb5a_wxs_gdc_realn.bam 36668438169 BAM harmonized CPTAC3 5513bf66-0b2c-4ef1-850b-6de5c1882efd a81d5ef237d47639d1eccc46562e0685 { 'aliquot_tag': 'ALQ_a38b9aa6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05318.MethArray.Green.Tpb C3L-05318 AML Methylation Array tumor_peripheral_blood CPT0340190002 205705520128_R03C01_Grn.idat 13677886 IDAT Green NA CPTAC3 b9e98634-da59-4036-953f-269fd2012dc1 c912e087fa9d25d3051d58a4e9f668fe { 'aliquot_tag': 'ALQ_8d42bd0a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05318.MethArray.Red.Tpb C3L-05318 AML Methylation Array tumor_peripheral_blood CPT0340190002 205705520128_R03C01_Red.idat 13677886 IDAT Red NA CPTAC3 c71c9941-315e-426f-839b-9fed27512513 fe77c703615d3c1f5e928c2cc5556a3e { 'aliquot_tag': 'ALQ_8d42bd0a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05318.miRNA-Seq.Tpb C3L-05318 AML miRNA-Seq tumor_peripheral_blood CPT0340200002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCGGCA_S21_L001_R1_001.unaln.bam 194387641 BAM unaligned CPTAC3 c3b50536-46ed-4427-b694-5714dcb2cbd8 68bc1fe8d0f49508817c9c9fb1cfbae3 { 'aliquot_tag': 'ALQ_6c6add5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05318.RNA-Seq.R1_L007.Tpb C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 211207_UNC32-K00270_0305_AHMW37BBXY_CGGCGTGA-GCGCCTGT_S26_L007_R1_001.fastq.gz 4328353401 FASTQ R1_L007 unaligned CPTAC3 85c6c9ac-1d34-446a-9da4-27b08104b1d3 292e2b306f69685e52dee93a33a6f5ac { 'aliquot_tag': 'ALQ_6c6add5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05318.RNA-Seq.R2_L007.Tpb C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 211207_UNC32-K00270_0305_AHMW37BBXY_CGGCGTGA-GCGCCTGT_S26_L007_R2_001.fastq.gz 4763712926 FASTQ R2_L007 unaligned CPTAC3 f0c73973-b3fc-4da0-9255-9d0f251fa09a e25d246b80fffdd39e9806769731210d { 'aliquot_tag': 'ALQ_6c6add5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05318.miRNA-Seq.Tpb.hg38 C3L-05318 AML miRNA-Seq tumor_peripheral_blood CPT0340200002 f730f965-8fa3-4373-88df-382c6d882c1b_mirnaseq_gdc_realn.bam 213713983 BAM harmonized CPTAC3 c24d3fda-f4dc-422c-a834-1cdf8f331941 37d0661c44b34c8551c0d359f85fc93f { 'aliquot_tag': 'ALQ_6c6add5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05318.RNA-Seq.chimeric.Tpb.hg38 C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 65d18e47-fa7e-4e93-abb1-82afa21bb8c3.rna_seq.chimeric.gdc_realn.bam 841533337 BAM chimeric harmonized CPTAC3 012552a6-d91f-407b-8e37-0ef5b316f66d 441bba81075bc366861baef363292e3d { 'aliquot_tag': 'ALQ_6c6add5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05318.RNA-Seq.genomic.Tpb.hg38 C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 65d18e47-fa7e-4e93-abb1-82afa21bb8c3.rna_seq.genomic.gdc_realn.bam 9265027028 BAM genomic harmonized CPTAC3 978a0c15-abb0-405b-b2bd-efc929ecccf6 65a5816d716ec90360e6fb2a42e8584d { 'aliquot_tag': 'ALQ_6c6add5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05318.RNA-Seq.R1_L007.Tpb C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 211207_UNC32-K00270_0305_AHMW37BBXY_CGGCGTGA-GCGCCTGT_S26_L007_R1_001.fastq.gz 4328353401 FASTQ R1_L007 unaligned CPTAC3 85c6c9ac-1d34-446a-9da4-27b08104b1d3 292e2b306f69685e52dee93a33a6f5ac { 'aliquot_tag': 'ALQ_6c6add5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L007' } +C3L-05318.RNA-Seq.R2_L007.Tpb C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 211207_UNC32-K00270_0305_AHMW37BBXY_CGGCGTGA-GCGCCTGT_S26_L007_R2_001.fastq.gz 4763712926 FASTQ R2_L007 unaligned CPTAC3 f0c73973-b3fc-4da0-9255-9d0f251fa09a e25d246b80fffdd39e9806769731210d { 'aliquot_tag': 'ALQ_6c6add5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L007' } +C3L-05318.RNA-Seq.transcriptome.Tpb.hg38 C3L-05318 AML RNA-Seq tumor_peripheral_blood CPT0340200002 65d18e47-fa7e-4e93-abb1-82afa21bb8c3.rna_seq.transcriptome.gdc_realn.bam 7605434977 BAM transcriptome harmonized CPTAC3 fcfb2ace-343a-4e7c-86f5-4694107ef409 f9487dd41f5b3b2f32e9a708296473e4 { 'aliquot_tag': 'ALQ_6c6add5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05318.WGS.Tpb C3L-05318 AML WGS tumor_peripheral_blood CPT0340190002 CPT0340190002.WholeGenome.RP-2158.bam 58942718796 BAM aligned CPTAC3 bf6aca8c-fef7-4cf5-a722-107b20aae057 b5ff189fdccb5797c369f446a63295a9 { 'aliquot_tag': 'ALQ_8d42bd0a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05318.WGS.Tpb.hg38 C3L-05318 AML WGS tumor_peripheral_blood CPT0340190002 b130869f-200a-4b0b-bb14-c216e8a8d8d3_wgs_gdc_realn.bam 513896838412 BAM harmonized CPTAC3 0b41440a-1550-4ee1-b2ec-878717972e62 9a93f0c2a78a74c399f67c92029c9734 { 'aliquot_tag': 'ALQ_8d42bd0a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05318.WXS.Nbc C3L-05318 AML WXS buccal_normal CPT0343360004 CPT0343360004.WholeExome.RP-1303.bam 27845411016 BAM aligned CPTAC3 d838b0db-3190-4ef2-9b81-3aa92668165b 1316e2933d785b3c9a6da8eb14f0469f { 'aliquot_tag': 'ALQ_9a513478', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05318.WXS.Nbc.hg38 C3L-05318 AML WXS buccal_normal CPT0343360004 555827ed-b7e8-44b0-9a30-f7cb9267d605_wxs_gdc_realn.bam 37563262859 BAM harmonized CPTAC3 d6e2c490-ffcc-464c-ad86-a7d4f73cb390 831156a879cef20541fd3bda429bb3ee { 'aliquot_tag': 'ALQ_9a513478', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05318.WXS.Tpb C3L-05318 AML WXS tumor_peripheral_blood CPT0340190002 CPT0340190002.WholeExome.RP-1303.bam 23566723323 BAM aligned CPTAC3 01ab7b59-5883-4b12-a7c7-bcdf32b9e026 f667b06c0befedced8f21890c8d35771 { 'aliquot_tag': 'ALQ_8d42bd0a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05318.WXS.Tpb.hg38 C3L-05318 AML WXS tumor_peripheral_blood CPT0340190002 b130869f-200a-4b0b-bb14-c216e8a8d8d3_wxs_gdc_realn.bam 33010345230 BAM harmonized CPTAC3 055faaab-28cb-4c6d-9fce-3fad493b76cb 798a1ee4dfef42864e2fb77ff466c201 { 'aliquot_tag': 'ALQ_8d42bd0a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05320.MethArray.Green.Tpb C3L-05320 AML Methylation Array tumor_peripheral_blood CPT0339870002 205987780101_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 81adf049-68f4-464b-bc6a-4b4928b439a0 e60378f46e297bfbbe46a098146fda5e { 'aliquot_tag': 'ALQ_8a201e69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05320.MethArray.Red.Tpb C3L-05320 AML Methylation Array tumor_peripheral_blood CPT0339870002 205987780101_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 1f2367b0-3980-4644-9c73-4788cb6ccddd 1591556668df5ee493504e33fefaf2b3 { 'aliquot_tag': 'ALQ_8a201e69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05320.miRNA-Seq.Tpb C3L-05320 AML miRNA-Seq tumor_peripheral_blood CPT0339880002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCGAAG_S20_L001_R1_001.unaln.bam 210101213 BAM unaligned CPTAC3 f6fa8507-e7fa-4244-8017-3a4e00dcb87e 29add84e18e2ce90e204be22e2505601 { 'aliquot_tag': 'ALQ_87089b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05320.RNA-Seq.R1_L007.Tpb C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 211207_UNC32-K00270_0305_AHMW37BBXY_TAATACAG-ATATTCAC_S28_L007_R1_001.fastq.gz 3894682572 FASTQ R1_L007 unaligned CPTAC3 58fe5b7e-1e2b-4b7b-8160-ff95ac1e8243 ff9b0461ffe243bc012031a76db6b50a { 'aliquot_tag': 'ALQ_87089b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05320.RNA-Seq.R2_L007.Tpb C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 211207_UNC32-K00270_0305_AHMW37BBXY_TAATACAG-ATATTCAC_S28_L007_R2_001.fastq.gz 4193776141 FASTQ R2_L007 unaligned CPTAC3 7b34f245-fca8-4c20-af9e-b8b66f6dfac3 7c98f269a69536b9758191d9dd3a82e6 { 'aliquot_tag': 'ALQ_87089b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05320.miRNA-Seq.Tpb.hg38 C3L-05320 AML miRNA-Seq tumor_peripheral_blood CPT0339880002 f882a493-cb3d-43eb-a1d1-97f678b8f2e9_mirnaseq_gdc_realn.bam 235005872 BAM harmonized CPTAC3 72fab87e-05dc-402b-b2b4-9450b1b142d8 06c177a20fef2f6ad74d9f7e715560b4 { 'aliquot_tag': 'ALQ_87089b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05320.RNA-Seq.chimeric.Tpb.hg38 C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 c533b4e5-4754-4833-b4ee-08b86b01f481.rna_seq.chimeric.gdc_realn.bam 445419065 BAM chimeric harmonized CPTAC3 ae774898-a06c-47ec-8999-7d38f3901e23 4018eaab1877cfd9bd71280900fd0cb0 { 'aliquot_tag': 'ALQ_87089b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05320.RNA-Seq.genomic.Tpb.hg38 C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 c533b4e5-4754-4833-b4ee-08b86b01f481.rna_seq.genomic.gdc_realn.bam 7822584363 BAM genomic harmonized CPTAC3 b72c76de-9539-4bf9-85b6-5bc3940cf11c ca60c4c78f41b01943c43129290f47f1 { 'aliquot_tag': 'ALQ_87089b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05320.RNA-Seq.R1_L007.Tpb C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 211207_UNC32-K00270_0305_AHMW37BBXY_TAATACAG-ATATTCAC_S28_L007_R1_001.fastq.gz 3894682572 FASTQ R1_L007 unaligned CPTAC3 58fe5b7e-1e2b-4b7b-8160-ff95ac1e8243 ff9b0461ffe243bc012031a76db6b50a { 'aliquot_tag': 'ALQ_87089b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L007' } +C3L-05320.RNA-Seq.R2_L007.Tpb C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 211207_UNC32-K00270_0305_AHMW37BBXY_TAATACAG-ATATTCAC_S28_L007_R2_001.fastq.gz 4193776141 FASTQ R2_L007 unaligned CPTAC3 7b34f245-fca8-4c20-af9e-b8b66f6dfac3 7c98f269a69536b9758191d9dd3a82e6 { 'aliquot_tag': 'ALQ_87089b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L007' } +C3L-05320.RNA-Seq.transcriptome.Tpb.hg38 C3L-05320 AML RNA-Seq tumor_peripheral_blood CPT0339880002 c533b4e5-4754-4833-b4ee-08b86b01f481.rna_seq.transcriptome.gdc_realn.bam 10534420855 BAM transcriptome harmonized CPTAC3 b7532d85-a94b-408f-b4b4-6b62488e9a8a f1b18066f834b890843f3c51117aa82c { 'aliquot_tag': 'ALQ_87089b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05320.WGS.Tpb C3L-05320 AML WGS tumor_peripheral_blood CPT0339870002 CPT0339870002.WholeGenome.RP-2158.bam 51258922514 BAM aligned CPTAC3 b938b0f8-0703-4df4-add4-b4be2240c7e5 5748b06c441326f6904e83762fe03eb5 { 'aliquot_tag': 'ALQ_8a201e69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05320.WGS.Tpb.hg38 C3L-05320 AML WGS tumor_peripheral_blood CPT0339870002 d63123be-df53-4296-b83a-11f2fa243e86_wgs_gdc_realn.bam 452759477752 BAM harmonized CPTAC3 7803bc8c-d6d0-4975-9c62-2fea8187f349 9c81b12c5af98eb238beceb8acdea04c { 'aliquot_tag': 'ALQ_8a201e69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05320.WXS.Nbc C3L-05320 AML WXS buccal_normal CPT0339840004 CPT0339840004.WholeExome.RP-1303.bam 21914195628 BAM aligned CPTAC3 15fc319f-90b1-4c96-b3c1-6e44846396c1 97bf3bee017516f88f37d5c68aaa2f5f { 'aliquot_tag': 'ALQ_24e3c18c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05320.WXS.Nbc.hg38 C3L-05320 AML WXS buccal_normal CPT0339840004 68cf330a-fa16-4132-bf9b-1cc003a13282_wxs_gdc_realn.bam 29293490828 BAM harmonized CPTAC3 55f9d769-c711-4f7b-a3b6-33b16ff5734c 9605c0f93cf2d1607a7e333220df1ae0 { 'aliquot_tag': 'ALQ_24e3c18c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05320.WXS.Tpb C3L-05320 AML WXS tumor_peripheral_blood CPT0339870002 CPT0339870002.WholeExome.RP-1303.bam 20813544788 BAM aligned CPTAC3 6387725b-3839-433f-bea9-1adcd9bed73d 51a7661e2cd7d07d6a12ee55a5cded88 { 'aliquot_tag': 'ALQ_8a201e69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05320.WXS.Tpb.hg38 C3L-05320 AML WXS tumor_peripheral_blood CPT0339870002 d63123be-df53-4296-b83a-11f2fa243e86_wxs_gdc_realn.bam 73123744822 BAM harmonized CPTAC3 af1fde5a-49a0-4607-ab3d-dce11cada86a c0c9be17a5b57e4ac018fa392957931a { 'aliquot_tag': 'ALQ_8a201e69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05325.MethArray.Green.Tbm C3L-05325 AML Methylation Array tumor_bone_marrow CPT0302970002 204930640111_R08C01_Grn.idat 13677960 IDAT Green NA CPTAC3 5cf9af22-03e3-4fb8-8f7e-f83971e90695 299454418fb5d64ae4ef4b7f5d8293d5 { 'aliquot_tag': 'ALQ_cdf49ed5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05325.MethArray.Red.Tbm C3L-05325 AML Methylation Array tumor_bone_marrow CPT0302970002 204930640111_R08C01_Red.idat 13677960 IDAT Red NA CPTAC3 bd7b2228-69e1-491e-b59d-1acf0b4248ac 0ee62af8ec2a15c812b129935c42e225 { 'aliquot_tag': 'ALQ_cdf49ed5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05325.miRNA-Seq.Tbm C3L-05325 AML miRNA-Seq tumor_bone_marrow CPT0302980002 210331_UNC31-K00269_0297_AHKCFKBBXY_CACGAT_S41_L008_R1_001.unaln.bam 377230039 BAM unaligned CPTAC3 be7638b7-7ed9-43d6-8939-a1652c4f9e51 1676e6698e3e8b2ea6f1170fc3afb701 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05325.miRNA-Seq.Tbm.hg38 C3L-05325 AML miRNA-Seq tumor_bone_marrow CPT0302980002 7b07132a-0048-4c84-9c14-23c2dbdc0143_mirnaseq_gdc_realn.bam 396617023 BAM harmonized CPTAC3 e49d89ef-1b71-4caa-b6d2-5819e356adf8 f70a7fa10c2575a65b356c1679eeb4d9 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05325.RNA-Seq.chimeric.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e7613867-c769-4468-a41d-743d58c9d410.rna_seq.chimeric.gdc_realn.bam 145438695 BAM chimeric harmonized CPTAC3 397e982e-1185-4115-8e22-78feb268c248 5ab8ecc8f2a84ad930c0b19247685587 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05325.RNA-Seq.genomic.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e7613867-c769-4468-a41d-743d58c9d410.rna_seq.genomic.gdc_realn.bam 8073241991 BAM genomic harmonized CPTAC3 e2c0808a-434f-4148-8574-4f24d11e306d 3455fe4687941392f51ff30f023f9397 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05325.RNA-Seq.R1_L001.Tbm C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 210319_UNC31-K00269_0296_AHKT37BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R1_001.fastq.gz 3865706854 FASTQ R1_L001 unaligned CPTAC3 9e0e8b18-e220-45e2-baea-b937188f3285 b4a7550fd5c69b6f73ad4b30dbaaf3e6 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05325.RNA-Seq.R2_L001.Tbm C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 210319_UNC31-K00269_0296_AHKT37BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R2_001.fastq.gz 4408396996 FASTQ R2_L001 unaligned CPTAC3 6c64aa9e-f5cc-4d55-bdad-8ba6f69a4075 680565e55297e4f206372163c52f9f50 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05325.RNA-Seq.transcriptome.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e7613867-c769-4468-a41d-743d58c9d410.rna_seq.transcriptome.gdc_realn.bam 9025903450 BAM transcriptome harmonized CPTAC3 3b33174a-6b12-4819-bd41-6fbb164cd077 ccfbe7734c69c6b8a50a9f88914795e4 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05325.RNA-Seq.chimeric.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e93f989f-a8d6-4ce0-962e-b92e2b30cab6.rna_seq.chimeric.gdc_realn.bam 145422441 BAM chimeric harmonized CPTAC3 3491ba24-b6f1-4310-ac5b-c9a790328d0c 4da728dbbd003f8e04a090840540cd52 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05325.RNA-Seq.genomic.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e93f989f-a8d6-4ce0-962e-b92e2b30cab6.rna_seq.genomic.gdc_realn.bam 8082040900 BAM genomic harmonized CPTAC3 ea63d3fe-65d0-4dca-8e23-9c7c01fbc105 13700607219dceccc5ef0b5c28c9589a { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05325.RNA-Seq.R1_L001.Tbm C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 210319_UNC31-K00269_0296_AHKT37BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R1_001.fastq.gz 3865706854 FASTQ R1_L001 unaligned CPTAC3 9e0e8b18-e220-45e2-baea-b937188f3285 b4a7550fd5c69b6f73ad4b30dbaaf3e6 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-05325.RNA-Seq.R2_L001.Tbm C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 210319_UNC31-K00269_0296_AHKT37BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R2_001.fastq.gz 4408396996 FASTQ R2_L001 unaligned CPTAC3 6c64aa9e-f5cc-4d55-bdad-8ba6f69a4075 680565e55297e4f206372163c52f9f50 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-05325.RNA-Seq.transcriptome.Tbm.hg38 C3L-05325 AML RNA-Seq tumor_bone_marrow CPT0302980002 e93f989f-a8d6-4ce0-962e-b92e2b30cab6.rna_seq.transcriptome.gdc_realn.bam 10397615890 BAM transcriptome harmonized CPTAC3 721c187a-5d07-43a4-b081-187b7068b2cb 93dd17f524d57517bfe2b2ef6f605df4 { 'aliquot_tag': 'ALQ_4fa40904', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05325.WGS.Nbc C3L-05325 AML WGS buccal_normal CPT0303090001 CPT0303090001.WholeGenome.RP-2158.bam 56590884436 BAM aligned CPTAC3 4e767e17-6e45-40f8-8f28-e7529b80f106 a3cd9d2478f141a954824a0cc57997e3 { 'aliquot_tag': 'ALQ_6ab52b72', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05325.WGS.Nbc.hg38 C3L-05325 AML WGS buccal_normal CPT0303090001 e19d601a-2cc0-4fa6-9087-b132aad1231c_wgs_gdc_realn.bam 165632305636 BAM harmonized CPTAC3 bd569d7a-2452-48fc-bb63-a7592fecb358 5e0c95a681d8c71b90df5b283ff951c2 { 'aliquot_tag': 'ALQ_6ab52b72', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05325.WGS.Tbm C3L-05325 AML WGS tumor_bone_marrow CPT0302970002 CPT0302970002.WholeGenome.RP-2158.bam 54453345467 BAM aligned CPTAC3 b57e5e5a-06fb-4cdc-8c6b-6a89307b13f2 048a27b7bbb91003bf649f83b262e108 { 'aliquot_tag': 'ALQ_cdf49ed5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05325.WGS.Tbm.hg38 C3L-05325 AML WGS tumor_bone_marrow CPT0302970002 4e3aef2e-1a2f-4069-b258-fc6aef5b473b_wgs_gdc_realn.bam 161685499178 BAM harmonized CPTAC3 cc26201b-60ab-42fe-b54b-01affbeb695b a15d2dab24df9c784c4335d04accf98e { 'aliquot_tag': 'ALQ_cdf49ed5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05325.WXS.Nbc C3L-05325 AML WXS buccal_normal CPT0303090001 CPT0303090001.WholeExome.RP-1303.bam 26560098500 BAM aligned CPTAC3 72060486-aa88-46f1-8892-64a0335a49f4 f94cffdc7c758f62474068d9cc11fbd8 { 'aliquot_tag': 'ALQ_6ab52b72', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05325.WXS.Nbc.hg38 C3L-05325 AML WXS buccal_normal CPT0303090001 e19d601a-2cc0-4fa6-9087-b132aad1231c_wxs_gdc_realn.bam 36111724180 BAM harmonized CPTAC3 508a3aa9-018b-4db7-9750-68ad57767d7b 272c22ad952fe4e8dc0549fc4467d716 { 'aliquot_tag': 'ALQ_6ab52b72', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05325.WXS.Tbm C3L-05325 AML WXS tumor_bone_marrow CPT0302970002 CPT0302970002.WholeExome.RP-1303.bam 20849146090 BAM aligned CPTAC3 0ece81db-6720-4b44-ac8f-e0dd68e02452 c93d10ce4805a61662d7f5d99acc5ae2 { 'aliquot_tag': 'ALQ_cdf49ed5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05325.WXS.Tbm.hg38 C3L-05325 AML WXS tumor_bone_marrow CPT0302970002 4e3aef2e-1a2f-4069-b258-fc6aef5b473b_wxs_gdc_realn.bam 29330023655 BAM harmonized CPTAC3 bbc8b9df-2e77-4e96-bedb-039e831f7cd6 8f0bfb3101280932bc854c4676c71839 { 'aliquot_tag': 'ALQ_cdf49ed5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05326.MethArray.Green.Tbm C3L-05326 AML Methylation Array tumor_bone_marrow CPT0302760002 205555390174_R02C01_Grn.idat 13677965 IDAT Green NA CPTAC3 d3d39004-8ccf-47f1-a2eb-fb977097d8d5 4b97732149f247d943343eae7a6d374e { 'aliquot_tag': 'ALQ_ca9ed615', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05326.MethArray.Red.Tbm C3L-05326 AML Methylation Array tumor_bone_marrow CPT0302760002 205555390174_R02C01_Red.idat 13677965 IDAT Red NA CPTAC3 fd96d0a7-6894-477a-8fdd-636ff8c40c1e 5b3edbedf8f76ae8c0e29abdc18b67c6 { 'aliquot_tag': 'ALQ_ca9ed615', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05326.miRNA-Seq.Tbm C3L-05326 AML miRNA-Seq tumor_bone_marrow CPT0302770002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAACTA_S39_L008_R1_001.unaln.bam 358837826 BAM unaligned CPTAC3 dac6b25e-7855-4833-867d-a88e51a33262 644d4201cd35494ef4a846265b22005d { 'aliquot_tag': 'ALQ_f7feffa5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05326.miRNA-Seq.Tbm.hg38 C3L-05326 AML miRNA-Seq tumor_bone_marrow CPT0302770002 f2f9ec28-5d44-451e-ab6b-7cf3f85dd00b_mirnaseq_gdc_realn.bam 391075330 BAM harmonized CPTAC3 1f6c3cbd-2b30-4aad-ae05-e386b9f1d438 7ac78cb490800372dcd3a35c5ed27cc1 { 'aliquot_tag': 'ALQ_f7feffa5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05326.RNA-Seq.R1_L001.Tbm C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGAGAC-CATTGTTG_S4_L001_R1_001.fastq.gz 3880007997 FASTQ R1_L001 unaligned CPTAC3 f93b8cdc-388d-43ac-82ea-65102255812d 0f7a6cd08b639e7d54a6a049b3f975aa { 'aliquot_tag': 'ALQ_f7feffa5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05326.RNA-Seq.R2_L001.Tbm C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGAGAC-CATTGTTG_S4_L001_R2_001.fastq.gz 4354319919 FASTQ R2_L001 unaligned CPTAC3 2efc1bcc-69be-4919-a672-f15e499562a7 05a33e04d2d99d56839c12c406921d15 { 'aliquot_tag': 'ALQ_f7feffa5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05326.RNA-Seq.chimeric.Tbm.hg38 C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 9acfdafd-9914-4c78-9b23-6fc8bb65964e.rna_seq.chimeric.gdc_realn.bam 134384296 BAM chimeric harmonized CPTAC3 5b6926b5-670c-4442-8492-7db6bc49e899 42b6acd643de8d2ae04df0d6971c790b { 'aliquot_tag': 'ALQ_f7feffa5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05326.RNA-Seq.genomic.Tbm.hg38 C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 9acfdafd-9914-4c78-9b23-6fc8bb65964e.rna_seq.genomic.gdc_realn.bam 7897135026 BAM genomic harmonized CPTAC3 dfa72d70-310c-465d-aa9c-fa1e0aa05f9d 34d42ed146a43d618a668bb60ddb3bd0 { 'aliquot_tag': 'ALQ_f7feffa5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05326.RNA-Seq.R1_L001.Tbm C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGAGAC-CATTGTTG_S4_L001_R1_001.fastq.gz 3880007997 FASTQ R1_L001 unaligned CPTAC3 f93b8cdc-388d-43ac-82ea-65102255812d 0f7a6cd08b639e7d54a6a049b3f975aa { 'aliquot_tag': 'ALQ_f7feffa5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-05326.RNA-Seq.R2_L001.Tbm C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGCGAGAC-CATTGTTG_S4_L001_R2_001.fastq.gz 4354319919 FASTQ R2_L001 unaligned CPTAC3 2efc1bcc-69be-4919-a672-f15e499562a7 05a33e04d2d99d56839c12c406921d15 { 'aliquot_tag': 'ALQ_f7feffa5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-05326.RNA-Seq.transcriptome.Tbm.hg38 C3L-05326 AML RNA-Seq tumor_bone_marrow CPT0302770002 9acfdafd-9914-4c78-9b23-6fc8bb65964e.rna_seq.transcriptome.gdc_realn.bam 7817736125 BAM transcriptome harmonized CPTAC3 ec99fa68-b94a-405c-889f-96bb439e4924 aa47717ba3186623bb203e41c5dddcbd { 'aliquot_tag': 'ALQ_f7feffa5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05326.WGS.Nbc C3L-05326 AML WGS buccal_normal CPT0302810001 CPT0302810001.WholeGenome.RP-2158.bam 50975153110 BAM aligned CPTAC3 b086b1da-a1b6-4fa8-8bc6-d3108e317114 a6fed2fd4ed877f385d2744ec91acb8c { 'aliquot_tag': 'ALQ_10e1e96a', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05326.WGS.Nbc.hg38 C3L-05326 AML WGS buccal_normal CPT0302810001 85125c43-2c59-4e3d-8314-cd25e40067d7_wgs_gdc_realn.bam 151390699487 BAM harmonized CPTAC3 5642b833-19b5-4ca9-86f9-5f2dccbe5689 ea517c1d52277084403518ab99b0b4cd { 'aliquot_tag': 'ALQ_10e1e96a', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05326.WGS.Tbm C3L-05326 AML WGS tumor_bone_marrow CPT0302760002 CPT0302760002.WholeGenome.RP-2158.bam 46492926205 BAM aligned CPTAC3 4d9c5f28-2169-458a-9d7d-250aea59ffe0 0b3497f8e0595600bd4324c5b7e096a8 { 'aliquot_tag': 'ALQ_ca9ed615', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05326.WGS.Tbm.hg38 C3L-05326 AML WGS tumor_bone_marrow CPT0302760002 b54ce5d7-10bb-4fc4-b17e-fe70931b6451_wgs_gdc_realn.bam 131680411952 BAM harmonized CPTAC3 5fdc4e26-0c42-4cd4-ace3-4595f8dfbb45 28beb11db9f9822675f50f7a195fc6dc { 'aliquot_tag': 'ALQ_ca9ed615', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05326.WXS.Nbc C3L-05326 AML WXS buccal_normal CPT0302810001 CPT0302810001.WholeExome.RP-1303.bam 33427677400 BAM aligned CPTAC3 a1744add-3d2c-461d-87ee-fd363bbc6948 dbbbf0ac5864fe65b06a26f21f625a94 { 'aliquot_tag': 'ALQ_10e1e96a', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05326.WXS.Nbc.hg38 C3L-05326 AML WXS buccal_normal CPT0302810001 85125c43-2c59-4e3d-8314-cd25e40067d7_wxs_gdc_realn.bam 45992366612 BAM harmonized CPTAC3 ec091100-2100-4d29-a873-296e36d7db86 e0e3c2edb2e2f8640fbde63aa56f24c8 { 'aliquot_tag': 'ALQ_10e1e96a', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05326.WXS.Tbm C3L-05326 AML WXS tumor_bone_marrow CPT0302760002 CPT0302760002.WholeExome.RP-1303.bam 28466118662 BAM aligned CPTAC3 c3f2f7b1-6385-4c4c-818b-cad5385a2ea4 16299cf5101fa7d7232d9066fde2bd6f { 'aliquot_tag': 'ALQ_ca9ed615', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05326.WXS.Tbm.hg38 C3L-05326 AML WXS tumor_bone_marrow CPT0302760002 b54ce5d7-10bb-4fc4-b17e-fe70931b6451_wxs_gdc_realn.bam 39306222403 BAM harmonized CPTAC3 724a4f7d-86d8-4998-99c7-f5720004fd6a 172e3a1f8871d38a4dee8cfd376f9927 { 'aliquot_tag': 'ALQ_ca9ed615', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05329.MethArray.Green.Tbm C3L-05329 AML Methylation Array tumor_bone_marrow CPT0302620002 205555390119_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 db0e6715-9a7f-40f9-beca-e2721c40bc98 469636ee3250c943a9cc25c61896b519 { 'aliquot_tag': 'ALQ_f442a370', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05329.MethArray.Red.Tbm C3L-05329 AML Methylation Array tumor_bone_marrow CPT0302620002 205555390119_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 e5f82d22-d8d4-409b-8e17-c55ccb7abfdf 78725551c0c68e6031dc3ba86886b2a8 { 'aliquot_tag': 'ALQ_f442a370', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05329.miRNA-Seq.Tbm C3L-05329 AML miRNA-Seq tumor_bone_marrow CPT0302630002 210702_UNC32-K00270_0289_AHKJ22BBXY_AGTTCC_S4_L001_R1_001.unaln.bam 335009017 BAM unaligned CPTAC3 d4759a77-11fc-4d0f-bd4c-f51c095bb644 0cbcea1277da051d52d009dc3de16840 { 'aliquot_tag': 'ALQ_c9228ac0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05329.RNA-Seq.R1_L005.Tbm C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 210319_UNC31-K00269_0296_AHKT37BBXY_TAAGGTCA-TGTCGTAG_S19_L005_R1_001.fastq.gz 4216058908 FASTQ R1_L005 unaligned CPTAC3 db8f255b-3efc-4c13-a464-c72591e7a005 a6ffc728498141c3301a48fae9491d3c { 'aliquot_tag': 'ALQ_c9228ac0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05329.RNA-Seq.R2_L005.Tbm C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 210319_UNC31-K00269_0296_AHKT37BBXY_TAAGGTCA-TGTCGTAG_S19_L005_R2_001.fastq.gz 4399016864 FASTQ R2_L005 unaligned CPTAC3 5a5f7599-98e0-4f51-a77b-169bcfc351c8 10d7fd68ae44242b896febba46f6e0e2 { 'aliquot_tag': 'ALQ_c9228ac0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05329.miRNA-Seq.Tbm.hg38 C3L-05329 AML miRNA-Seq tumor_bone_marrow CPT0302630002 a8ca982f-f202-4c3d-8870-c49b3226ba6a_mirnaseq_gdc_realn.bam 356328755 BAM harmonized CPTAC3 22491986-b918-4374-a438-934032dbe331 1a4275d850bc25b23aa485bc6e4ea6e0 { 'aliquot_tag': 'ALQ_c9228ac0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05329.RNA-Seq.chimeric.Tbm.hg38 C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 59bc6ae6-b109-4f9d-8b5d-e4d8be920464.rna_seq.chimeric.gdc_realn.bam 180387844 BAM chimeric harmonized CPTAC3 20756437-abef-4f99-8973-1184c914c96b fce9ffce0dc7cf72a623be8695bff5b8 { 'aliquot_tag': 'ALQ_c9228ac0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05329.RNA-Seq.genomic.Tbm.hg38 C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 59bc6ae6-b109-4f9d-8b5d-e4d8be920464.rna_seq.genomic.gdc_realn.bam 8182749938 BAM genomic harmonized CPTAC3 1117f318-f3cc-4378-8c69-6346a644dfb5 cad5734ae19b1ec1d243ea7553ebe0bc { 'aliquot_tag': 'ALQ_c9228ac0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05329.RNA-Seq.R1_L005.Tbm C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 210319_UNC31-K00269_0296_AHKT37BBXY_TAAGGTCA-TGTCGTAG_S19_L005_R1_001.fastq.gz 4216058908 FASTQ R1_L005 unaligned CPTAC3 db8f255b-3efc-4c13-a464-c72591e7a005 a6ffc728498141c3301a48fae9491d3c { 'aliquot_tag': 'ALQ_c9228ac0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-05329.RNA-Seq.R2_L005.Tbm C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 210319_UNC31-K00269_0296_AHKT37BBXY_TAAGGTCA-TGTCGTAG_S19_L005_R2_001.fastq.gz 4399016864 FASTQ R2_L005 unaligned CPTAC3 5a5f7599-98e0-4f51-a77b-169bcfc351c8 10d7fd68ae44242b896febba46f6e0e2 { 'aliquot_tag': 'ALQ_c9228ac0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-05329.RNA-Seq.transcriptome.Tbm.hg38 C3L-05329 AML RNA-Seq tumor_bone_marrow CPT0302630002 59bc6ae6-b109-4f9d-8b5d-e4d8be920464.rna_seq.transcriptome.gdc_realn.bam 9941934063 BAM transcriptome harmonized CPTAC3 502329b9-a046-4b81-824d-e68a73cdf67d 05d91d9419722d336fa27519e5cbd04a { 'aliquot_tag': 'ALQ_c9228ac0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05329.WGS.Nbc C3L-05329 AML WGS buccal_normal CPT0302720002 CPT0302720002.WholeGenome.RP-2158.bam 51307611082 BAM aligned CPTAC3 619a2f7a-1015-4349-ad5a-ea2a8af952fb 0a54442772942d9e71830830ef0b7ba4 { 'aliquot_tag': 'ALQ_3f1e70d5', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05329.WGS.Nbc.hg38 C3L-05329 AML WGS buccal_normal CPT0302720002 b456bbdf-1c90-4adb-9e43-3e230e94ddfa_wgs_gdc_realn.bam 152193846711 BAM harmonized CPTAC3 791e3842-80c8-401d-a611-a5b5825f9ce7 0d32aa67b7d0dc80eb0866adffb45225 { 'aliquot_tag': 'ALQ_3f1e70d5', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05329.WGS.Tbm C3L-05329 AML WGS tumor_bone_marrow CPT0302620002 CPT0302620002.WholeGenome.RP-2158.bam 74022828528 BAM aligned CPTAC3 dd445304-44c8-4444-8e7a-3d23b836cf7c ffcb89b5090b3793571609c0af9d6362 { 'aliquot_tag': 'ALQ_f442a370', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05329.WGS.Tbm.hg38 C3L-05329 AML WGS tumor_bone_marrow CPT0302620002 23cb3fbd-58e0-498e-8b63-d02df69ca4f2_wgs_gdc_realn.bam 217750987783 BAM harmonized CPTAC3 2c76956b-1fb0-4fcf-af09-37466c893f73 c7357998a5b010e66bfe4f20417d56d8 { 'aliquot_tag': 'ALQ_f442a370', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05329.WXS.Tbm C3L-05329 AML WXS tumor_bone_marrow CPT0302620002 CPT0302620002.WholeExome.RP-1303.bam 22179430814 BAM aligned CPTAC3 bade3fad-dca9-4dc2-87c0-8179fe0c7e15 0021fbba0f0e2c55d5d7593d49189a96 { 'aliquot_tag': 'ALQ_f442a370', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05329.WXS.Tbm.hg38 C3L-05329 AML WXS tumor_bone_marrow CPT0302620002 23cb3fbd-58e0-498e-8b63-d02df69ca4f2_wxs_gdc_realn.bam 30741990622 BAM harmonized CPTAC3 6b9a11bc-b5d5-46bd-826e-fb1e47378114 696cede279c96a0f48ee9307270391c6 { 'aliquot_tag': 'ALQ_f442a370', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05331.MethArray.Green.Tbm C3L-05331 AML Methylation Array tumor_bone_marrow CPT0303460002 204930640111_R07C01_Grn.idat 13677960 IDAT Green NA CPTAC3 5146cc9c-4ff6-467e-9214-aac9730eaa0e 18d947c345b4ea3cad60425a6c911e8b { 'aliquot_tag': 'ALQ_ea7daf0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05331.MethArray.Red.Tbm C3L-05331 AML Methylation Array tumor_bone_marrow CPT0303460002 204930640111_R07C01_Red.idat 13677960 IDAT Red NA CPTAC3 10e4276c-770a-4f87-b56c-4c3ad70842b0 697f066628de94a242d4d3f262fcfc8b { 'aliquot_tag': 'ALQ_ea7daf0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05331.miRNA-Seq.Tbm C3L-05331 AML miRNA-Seq tumor_bone_marrow CPT0303470002 210331_UNC31-K00269_0297_AHKCFKBBXY_CATGGC_S44_L008_R1_001.unaln.bam 176377459 BAM unaligned CPTAC3 123c07a7-8e86-43c7-8a6b-68f78c1f7a15 7e3307375f7c13c2de43ffc54380b8e2 { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05331.miRNA-Seq.Tbm.hg38 C3L-05331 AML miRNA-Seq tumor_bone_marrow CPT0303470002 22b670d6-77df-4f60-b429-680a99bf4590_mirnaseq_gdc_realn.bam 190025838 BAM harmonized CPTAC3 9e8d744c-0fd6-43d5-96b7-2c4088e47e6b c715b91834e5647ba2ccaa2c0cceb913 { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05331.RNA-Seq.chimeric.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 3328e4a1-4359-4a11-a185-6cec60a279de.rna_seq.chimeric.gdc_realn.bam 55271186 BAM chimeric harmonized CPTAC3 af16823c-effa-4022-a58e-92de7661ce74 f2baef0e20bac7f5ba8e9859736b9a33 { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05331.RNA-Seq.genomic.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 3328e4a1-4359-4a11-a185-6cec60a279de.rna_seq.genomic.gdc_realn.bam 7349586397 BAM genomic harmonized CPTAC3 e3f92abe-b08c-4177-8a44-fe61673cdf2b b6b6b1aedb4eb2f849a580fed76adab1 { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05331.RNA-Seq.R1_L008.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 210319_UNC31-K00269_0296_AHKT37BBXY_GGTCACGA-GTATTATG_S31_L008_R1_001.fastq.gz 3742653458 FASTQ R1_L008 unaligned CPTAC3 b151c6c4-6506-49eb-8799-962f84a085d2 5784df326ca2bd7819b998d69ec18561 { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05331.RNA-Seq.R2_L008.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 210319_UNC31-K00269_0296_AHKT37BBXY_GGTCACGA-GTATTATG_S31_L008_R2_001.fastq.gz 3998407281 FASTQ R2_L008 unaligned CPTAC3 f1081644-0d91-4026-91cd-bacd5ff76d52 0c1f85d0a410860406580ff6da184dfb { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05331.RNA-Seq.transcriptome.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 3328e4a1-4359-4a11-a185-6cec60a279de.rna_seq.transcriptome.gdc_realn.bam 7977464149 BAM transcriptome harmonized CPTAC3 682edbbb-9986-4ca9-87cc-be82e54151c2 a72c479099011eecb6abddd96541f2c5 { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05331.RNA-Seq.chimeric.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 e97ef600-41e7-454d-9f8b-f4c909dd5980.rna_seq.chimeric.gdc_realn.bam 55266239 BAM chimeric harmonized CPTAC3 aa28150b-2d25-4c69-828e-907cfabba5f0 37e8fe4df93c8fd1c47f2b5266c94b81 { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05331.RNA-Seq.genomic.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 e97ef600-41e7-454d-9f8b-f4c909dd5980.rna_seq.genomic.gdc_realn.bam 7357034413 BAM genomic harmonized CPTAC3 0b337f5d-e93d-4827-ab3c-deca03f2b5f5 a01790b56aa88f150956037e45cf017e { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05331.RNA-Seq.R1_L008.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 210319_UNC31-K00269_0296_AHKT37BBXY_GGTCACGA-GTATTATG_S31_L008_R1_001.fastq.gz 3742653458 FASTQ R1_L008 unaligned CPTAC3 b151c6c4-6506-49eb-8799-962f84a085d2 5784df326ca2bd7819b998d69ec18561 { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-05331.RNA-Seq.R2_L008.Tbm C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 210319_UNC31-K00269_0296_AHKT37BBXY_GGTCACGA-GTATTATG_S31_L008_R2_001.fastq.gz 3998407281 FASTQ R2_L008 unaligned CPTAC3 f1081644-0d91-4026-91cd-bacd5ff76d52 0c1f85d0a410860406580ff6da184dfb { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-05331.RNA-Seq.transcriptome.Tbm.hg38 C3L-05331 AML RNA-Seq tumor_bone_marrow CPT0303470002 e97ef600-41e7-454d-9f8b-f4c909dd5980.rna_seq.transcriptome.gdc_realn.bam 9245018214 BAM transcriptome harmonized CPTAC3 8c5903c2-9c19-4e28-8d25-8b7d037d9c06 bd0f97b1e181484fe8fdbae0c1a25477 { 'aliquot_tag': 'ALQ_d71d86bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05331.WGS.Nbc C3L-05331 AML WGS buccal_normal CPT0303580001 CPT0303580001.WholeGenome.RP-2158.bam 60840274168 BAM aligned CPTAC3 5aaf07f3-3cc2-496a-992d-1d0755da720c aa21eaa7f299f378f06a4a22f33935f8 { 'aliquot_tag': 'ALQ_7189371', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05331.WGS.Nbc.hg38 C3L-05331 AML WGS buccal_normal CPT0303580001 bf80d543-ed68-4d80-b5a1-06a3b41c17db_wgs_gdc_realn.bam 183444998690 BAM harmonized CPTAC3 bbf8979f-080d-4a93-8c81-3b5b44a6a5db ccb739bfa83d9286323cad0d8bfd79f7 { 'aliquot_tag': 'ALQ_7189371', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05331.WGS.Tbm C3L-05331 AML WGS tumor_bone_marrow CPT0303460002 CPT0303460002.WholeGenome.RP-2158.bam 46959933148 BAM aligned CPTAC3 6b03ed9a-dc88-4393-bd02-9f87b534d5c4 4743a587b6a7aa05eb7050158932825d { 'aliquot_tag': 'ALQ_ea7daf0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05331.WGS.Tbm.hg38 C3L-05331 AML WGS tumor_bone_marrow CPT0303460002 2a22bda4-c7cb-4a5b-a1cc-629345cb0dd8_wgs_gdc_realn.bam 131612383213 BAM harmonized CPTAC3 f1fae58f-9b1b-4025-a253-9dcb308f4beb 336a02c6fecfa783ad65883fecf08e4a { 'aliquot_tag': 'ALQ_ea7daf0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05331.WXS.Nbc C3L-05331 AML WXS buccal_normal CPT0303580001 CPT0303580001.WholeExome.RP-1303.bam 29817732682 BAM aligned CPTAC3 fe873268-99eb-4920-96b0-c2b8875928ad ba555135d49c0f54e0145dc2e7466f1a { 'aliquot_tag': 'ALQ_7189371', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05331.WXS.Nbc.hg38 C3L-05331 AML WXS buccal_normal CPT0303580001 bf80d543-ed68-4d80-b5a1-06a3b41c17db_wxs_gdc_realn.bam 40929110588 BAM harmonized CPTAC3 9bfc5703-1f12-4a0e-9ae7-17b7cf0ed5f9 516d8ffbb1c3890ec4f5f29e752f92f5 { 'aliquot_tag': 'ALQ_7189371', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05331.WXS.Tbm C3L-05331 AML WXS tumor_bone_marrow CPT0303460002 CPT0303460002.WholeExome.RP-1303.bam 23804648889 BAM aligned CPTAC3 2ab9c7e6-1a1a-4825-9afe-5818779ccbaf 9cb43ebc03684ebca1fbfb37ad854e5a { 'aliquot_tag': 'ALQ_ea7daf0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05331.WXS.Tbm.hg38 C3L-05331 AML WXS tumor_bone_marrow CPT0303460002 2a22bda4-c7cb-4a5b-a1cc-629345cb0dd8_wxs_gdc_realn.bam 32693574088 BAM harmonized CPTAC3 786fd7da-f580-43f2-bb37-652f552c3bcd 5205f5ea78784ba85598d01ba19ba777 { 'aliquot_tag': 'ALQ_ea7daf0f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05334.MethArray.Green.Tbm C3L-05334 AML Methylation Array tumor_bone_marrow CPT0303320002 205555380130_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 43aec0ef-38d4-4838-9007-892430357bcd d9716e56e25f47bce5a4cb1dbce317f7 { 'aliquot_tag': 'ALQ_2f83977', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05334.MethArray.Red.Tbm C3L-05334 AML Methylation Array tumor_bone_marrow CPT0303320002 205555380130_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 943f790d-8690-4cd4-9648-ab3342f29306 d0e5f05322cbc8624e525f73e3ff7787 { 'aliquot_tag': 'ALQ_2f83977', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05334.miRNA-Seq.Tbm C3L-05334 AML miRNA-Seq tumor_bone_marrow CPT0303330002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAGGCG_S43_L008_R1_001.unaln.bam 238972897 BAM unaligned CPTAC3 7e11e7ed-296b-4de7-a56a-5196ea3c96ce 0efd0162a19abdf8d090bd883a5b397d { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05334.miRNA-Seq.Tbm.hg38 C3L-05334 AML miRNA-Seq tumor_bone_marrow CPT0303330002 dd86d68b-0355-4799-9f80-db4ed0d59941_mirnaseq_gdc_realn.bam 264185351 BAM harmonized CPTAC3 6a8182c7-88c0-4c4b-a5ab-c3db45b6c398 f38c89005d987919c3f82f0e8c745129 { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05334.RNA-Seq.chimeric.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.chimeric.gdc_realn.bam 71589182 BAM chimeric harmonized CPTAC3 8a5046da-814d-46bc-88cf-355053075c8e fd23a39aa1c1faa899b585a2579e9936 { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05334.RNA-Seq.genomic.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.genomic.gdc_realn.bam 7734283952 BAM genomic harmonized CPTAC3 5f9edf46-502b-4647-bf65-95b3a73e34d9 02f5352b4ff3c78781387512c6f5ea68 { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05334.RNA-Seq.R1_L008.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R1_001.fastq.gz 4020869371 FASTQ R1_L008 unaligned CPTAC3 e77c2a2d-dd02-46e6-a5d6-318bdb264914 a1d939e3935e75383fa7b31c4f0f37a9 { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05334.RNA-Seq.R2_L008.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R2_001.fastq.gz 4279525035 FASTQ R2_L008 unaligned CPTAC3 06f9c2be-9c21-41f3-9144-768393c3a873 655c337c805de5a885223e13e786160e { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05334.RNA-Seq.transcriptome.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.transcriptome.gdc_realn.bam 9728189517 BAM transcriptome harmonized CPTAC3 305f7d59-f842-4629-8fe9-3f4cc5973ee3 48102d0810e4b5fdf0b1f9875578cf20 { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05334.RNA-Seq.chimeric.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.chimeric.gdc_realn.bam 71589182 BAM chimeric harmonized CPTAC3 44422a11-80ef-4c94-b5a5-cea91e4d449e fd23a39aa1c1faa899b585a2579e9936 { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05334.RNA-Seq.genomic.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.genomic.gdc_realn.bam 7734283952 BAM genomic harmonized CPTAC3 46ced65f-cea5-45ca-a032-8a6d3f632e55 02f5352b4ff3c78781387512c6f5ea68 { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05334.RNA-Seq.R1_L008.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R1_001.fastq.gz 4020869371 FASTQ R1_L008 unaligned CPTAC3 e77c2a2d-dd02-46e6-a5d6-318bdb264914 a1d939e3935e75383fa7b31c4f0f37a9 { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-05334.RNA-Seq.R2_L008.Tbm C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 210319_UNC31-K00269_0296_AHKT37BBXY_AACTGTAG-ACGCCGCA_S29_L008_R2_001.fastq.gz 4279525035 FASTQ R2_L008 unaligned CPTAC3 06f9c2be-9c21-41f3-9144-768393c3a873 655c337c805de5a885223e13e786160e { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-05334.RNA-Seq.transcriptome.Tbm.hg38 C3L-05334 AML RNA-Seq tumor_bone_marrow CPT0303330002 3cc7d3b2-d9c1-4830-b8ae-febe6905e0b4.rna_seq.transcriptome.gdc_realn.bam 9728189517 BAM transcriptome harmonized CPTAC3 405c65f2-bf2b-4e7f-bbb6-04d49a67af57 48102d0810e4b5fdf0b1f9875578cf20 { 'aliquot_tag': 'ALQ_3f9810c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05334.WGS.Tbm C3L-05334 AML WGS tumor_bone_marrow CPT0303320002 CPT0303320002.WholeGenome.RP-2158.bam 58846336015 BAM aligned CPTAC3 328856bb-1531-4d62-a957-157e82b2f6eb da0e2394c6a29a2e7445c01d679a3de5 { 'aliquot_tag': 'ALQ_2f83977', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05334.WGS.Tbm.hg38 C3L-05334 AML WGS tumor_bone_marrow CPT0303320002 268ad7f9-d206-4f81-bbb8-d5b3037e47ab_wgs_gdc_realn.bam 172800935254 BAM harmonized CPTAC3 eb11fee7-9838-43b4-92d1-2ff6a994bc31 d66db84022819da49506879cf7b55fed { 'aliquot_tag': 'ALQ_2f83977', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05334.WXS.Nbc C3L-05334 AML WXS buccal_normal CPT0303440002 CPT0303440002.WholeExome.RP-1303.bam 28980765151 BAM aligned CPTAC3 eae67e58-30a4-44d3-abfb-c4c674dd2814 4b85978475413d5e50de0628194c71e6 { 'aliquot_tag': 'ALQ_90bdfc6f', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05334.WXS.Nbc.hg38 C3L-05334 AML WXS buccal_normal CPT0303440002 df04ff41-e680-4a50-97fd-8b9e27252db2_wxs_gdc_realn.bam 39418047601 BAM harmonized CPTAC3 8cdf797c-dc5c-42d2-b159-92f0946be87a f6ff470dffa3e6779a09378811bd5805 { 'aliquot_tag': 'ALQ_90bdfc6f', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05334.WXS.Tbm C3L-05334 AML WXS tumor_bone_marrow CPT0303320002 CPT0303320002.WholeExome.RP-1303.bam 22175708157 BAM aligned CPTAC3 17704711-ef4b-49a9-bcb3-b28221d8e131 345b3ff2d9beb2cf793988168729c9a4 { 'aliquot_tag': 'ALQ_2f83977', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05334.WXS.Tbm.hg38 C3L-05334 AML WXS tumor_bone_marrow CPT0303320002 268ad7f9-d206-4f81-bbb8-d5b3037e47ab_wxs_gdc_realn.bam 30563419398 BAM harmonized CPTAC3 d8551d58-caba-4a44-9925-0553d5017411 79cf4d908a4abc8dc53382b57d1942c8 { 'aliquot_tag': 'ALQ_2f83977', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05335.MethArray.Green.Tbm C3L-05335 AML Methylation Array tumor_bone_marrow CPT0303780002 205555390128_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 dd15fcdb-103a-4f2e-89db-d4283dc45139 ea056588256fa1143e67c52f12ffb811 { 'aliquot_tag': 'ALQ_d3d963c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05335.MethArray.Red.Tbm C3L-05335 AML Methylation Array tumor_bone_marrow CPT0303780002 205555390128_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 bab53b22-4265-4c95-89c9-6ee9be77d6eb b7abdcd44d6af92d56373e9b6b1a1a31 { 'aliquot_tag': 'ALQ_d3d963c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05335.miRNA-Seq.Tbm C3L-05335 AML miRNA-Seq tumor_bone_marrow CPT0303790002 210702_UNC32-K00270_0289_AHKJ22BBXY_GGCTAC_S13_L001_R1_001.unaln.bam 229137458 BAM unaligned CPTAC3 9bf107d6-d030-476a-8f56-564cb1a6777d 9f4932ce84c6f6fc556b08b60d652900 { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05335.RNA-Seq.chimeric.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 ee012190-4cde-42d4-a3e2-70906feeb3b1.rna_seq.chimeric.gdc_realn.bam 230886002 BAM chimeric harmonized CPTAC3 0696ed00-5c19-4691-b1cd-a1c11781fa2e 1fa35b3e9b92041fc1c4b8899116ea7d { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05335.RNA-Seq.genomic.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 ee012190-4cde-42d4-a3e2-70906feeb3b1.rna_seq.genomic.gdc_realn.bam 7899473493 BAM genomic harmonized CPTAC3 56cef935-df4e-4e00-ba9c-df9d3f209643 8cb6626b894d65d3ed00e831639596eb { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05335.RNA-Seq.R1_L006.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R1_001.fastq.gz 4106093958 FASTQ R1_L006 unaligned CPTAC3 96bcd3c9-b405-404c-b043-9ae0e4398765 d80464d333e7378d47324f6b21f4e56f { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05335.RNA-Seq.R2_L006.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R2_001.fastq.gz 4271226200 FASTQ R2_L006 unaligned CPTAC3 98a9da44-38a6-4705-9b02-f2332e487e40 e1d52986ae9e725b96138827044629d4 { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05335.RNA-Seq.transcriptome.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 ee012190-4cde-42d4-a3e2-70906feeb3b1.rna_seq.transcriptome.gdc_realn.bam 8323372832 BAM transcriptome harmonized CPTAC3 90ebe48b-eab1-4a34-8271-7561258f0d44 abfac8994f8af71bc0769a91f7a954a2 { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05335.miRNA-Seq.Tbm.hg38 C3L-05335 AML miRNA-Seq tumor_bone_marrow CPT0303790002 7a641685-1d3c-4f37-8527-27441694f0af_mirnaseq_gdc_realn.bam 250325948 BAM harmonized CPTAC3 d0f1c09a-4472-4331-962c-bdbe3a7eb5a9 750e4b67eb5c0dee2e17a68952033575 { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05335.RNA-Seq.chimeric.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 62882cf1-6f89-47b2-bfa6-a29c40d2e66e.rna_seq.chimeric.gdc_realn.bam 230874766 BAM chimeric harmonized CPTAC3 cf2cd76d-01eb-4738-9f3b-abded1ac8c5f f148c4cbe7e318e188cd231392a3637e { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05335.RNA-Seq.genomic.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 62882cf1-6f89-47b2-bfa6-a29c40d2e66e.rna_seq.genomic.gdc_realn.bam 7906694334 BAM genomic harmonized CPTAC3 f289acba-07c4-4be6-880b-f7eb2464d702 0bfc3a18af9ec6a127f85dade5ca9fed { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05335.RNA-Seq.R1_L006.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R1_001.fastq.gz 4106093958 FASTQ R1_L006 unaligned CPTAC3 96bcd3c9-b405-404c-b043-9ae0e4398765 d80464d333e7378d47324f6b21f4e56f { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-05335.RNA-Seq.R2_L006.Tbm C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 210319_UNC31-K00269_0296_AHKT37BBXY_GATCTATC-ATGAGGCT_S23_L006_R2_001.fastq.gz 4271226200 FASTQ R2_L006 unaligned CPTAC3 98a9da44-38a6-4705-9b02-f2332e487e40 e1d52986ae9e725b96138827044629d4 { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-05335.RNA-Seq.transcriptome.Tbm.hg38 C3L-05335 AML RNA-Seq tumor_bone_marrow CPT0303790002 62882cf1-6f89-47b2-bfa6-a29c40d2e66e.rna_seq.transcriptome.gdc_realn.bam 9664894649 BAM transcriptome harmonized CPTAC3 659e41cc-b0f5-4255-aac7-e77548b2266d 53fa3b930d619c47a080b9b84ae99801 { 'aliquot_tag': 'ALQ_eeb94a70', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05335.WGS.Nbc C3L-05335 AML WGS buccal_normal CPT0303900001 CPT0303900001.WholeGenome.RP-2158.bam 54851118937 BAM aligned CPTAC3 8ed8edeb-499f-4b89-b167-f074d9b231e4 01aff9a6b1d8fcce5a612f7596f6dcdd { 'aliquot_tag': 'ALQ_40aa18cb', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05335.WGS.Nbc.hg38 C3L-05335 AML WGS buccal_normal CPT0303900001 db6412d0-5125-4730-baf5-786069bf9f6d_wgs_gdc_realn.bam 168491675145 BAM harmonized CPTAC3 76841f2b-4fd7-4071-b9d5-e5b573c876f0 98d8d412d04cde2d4972b6c7a018c547 { 'aliquot_tag': 'ALQ_40aa18cb', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05335.WGS.Tbm C3L-05335 AML WGS tumor_bone_marrow CPT0303780002 CPT0303780002.WholeGenome.RP-2158.bam 41712572364 BAM aligned CPTAC3 387ee555-d08e-4ebb-9497-5aec91e85a43 c1244bf228480d745b9e8f72d2c14288 { 'aliquot_tag': 'ALQ_d3d963c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05335.WGS.Tbm.hg38 C3L-05335 AML WGS tumor_bone_marrow CPT0303780002 1c6e8c35-0a4b-478a-887d-d10356b940f3_wgs_gdc_realn.bam 121501420032 BAM harmonized CPTAC3 66e7a5d3-2eff-4840-ab1e-448203643be7 ccdc34aaf3bf071ed6172e590e2ff521 { 'aliquot_tag': 'ALQ_d3d963c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05335.WXS.Nbc C3L-05335 AML WXS buccal_normal CPT0303900001 CPT0303900001.WholeExome.RP-1303.bam 20432195009 BAM aligned CPTAC3 2d46dd6f-614f-4a09-80cb-b29bda71dc7b 8323f528254bcd6a7db1421924c22d20 { 'aliquot_tag': 'ALQ_40aa18cb', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05335.WXS.Nbc.hg38 C3L-05335 AML WXS buccal_normal CPT0303900001 db6412d0-5125-4730-baf5-786069bf9f6d_wxs_gdc_realn.bam 28397070021 BAM harmonized CPTAC3 2b5cbbfe-66f9-45c1-9dea-02ae84d36b3a d78b142fb6a3e2bd83a732e3c36c3141 { 'aliquot_tag': 'ALQ_40aa18cb', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05335.WXS.Tbm C3L-05335 AML WXS tumor_bone_marrow CPT0303780002 CPT0303780002.WholeExome.RP-1303.bam 45934081947 BAM aligned CPTAC3 b1fa4aaa-8ce6-48eb-be0c-259e77ee93dc 990a6a9682272be1d0672c25776a4d33 { 'aliquot_tag': 'ALQ_d3d963c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05335.WXS.Tbm.hg38 C3L-05335 AML WXS tumor_bone_marrow CPT0303780002 1c6e8c35-0a4b-478a-887d-d10356b940f3_wxs_gdc_realn.bam 63548466044 BAM harmonized CPTAC3 562149f9-5cac-4a4d-a8d5-d8d8276c5020 9994edba8a46c4f9007a1e4e75b0e780 { 'aliquot_tag': 'ALQ_d3d963c0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05338.MethArray.Green.Tbm C3L-05338 AML Methylation Array tumor_bone_marrow CPT0303680002 205555390174_R05C01_Grn.idat 13677965 IDAT Green NA CPTAC3 c9f43c44-0797-4776-b190-7aec12ef607f 79910399513b1cb1d4196b4368495967 { 'aliquot_tag': 'ALQ_1885b065', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05338.MethArray.Red.Tbm C3L-05338 AML Methylation Array tumor_bone_marrow CPT0303680002 205555390174_R05C01_Red.idat 13677965 IDAT Red NA CPTAC3 e26c0dfe-aa17-4703-8c5f-e25ef4e52c2f f2a5b098d4677d7b587a2cb398966478 { 'aliquot_tag': 'ALQ_1885b065', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05338.miRNA-Seq.Tbm C3L-05338 AML miRNA-Seq tumor_bone_marrow CPT0303690002 210331_UNC31-K00269_0297_AHKCFKBBXY_CATTTT_S45_L008_R1_001.unaln.bam 291210175 BAM unaligned CPTAC3 8c0459df-deeb-41cc-a209-e59e5dc4ef88 8ce5fc61dc550ccec46a4c07078ffdcf { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05338.miRNA-Seq.Tbm.hg38 C3L-05338 AML miRNA-Seq tumor_bone_marrow CPT0303690002 0f78ff7c-3455-4ca5-a89a-174e41da2388_mirnaseq_gdc_realn.bam 310850103 BAM harmonized CPTAC3 17ee4ee3-d732-49e4-ae0f-7437eee98dbd 741480ef301e697129b87c164bccc2ff { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05338.RNA-Seq.chimeric.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 9787d98c-a208-40b6-b9fa-6870f63a7092.rna_seq.chimeric.gdc_realn.bam 62351367 BAM chimeric harmonized CPTAC3 befb2ba7-1fc3-4344-beab-4822977971d3 5b868cafd01368aabd0d87438ce08131 { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05338.RNA-Seq.genomic.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 9787d98c-a208-40b6-b9fa-6870f63a7092.rna_seq.genomic.gdc_realn.bam 6497370561 BAM genomic harmonized CPTAC3 a2b191e0-64ed-4ac1-acf1-6aff92989e9b 8512658e0f51ace447c44b92e3fa5891 { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05338.RNA-Seq.R1_L008.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R1_001.fastq.gz 3333672847 FASTQ R1_L008 unaligned CPTAC3 8241771f-9643-4930-b2e7-9a475f409c7d 73d022874a6a788ced12a1e0faa80331 { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05338.RNA-Seq.R2_L008.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R2_001.fastq.gz 3541389231 FASTQ R2_L008 unaligned CPTAC3 2866a4a3-9138-4b5f-81f8-58f3e929f704 768d51e328c6d491640404960b72785a { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05338.RNA-Seq.transcriptome.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 9787d98c-a208-40b6-b9fa-6870f63a7092.rna_seq.transcriptome.gdc_realn.bam 7741251691 BAM transcriptome harmonized CPTAC3 14948389-3b0b-4a87-a0d1-7f8a6deec311 b59976c5ec6631879cd61fe1f0b87a3f { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05338.RNA-Seq.chimeric.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 951e9de5-82e0-46ce-a83b-9adf8ad6d86f.rna_seq.chimeric.gdc_realn.bam 62347550 BAM chimeric harmonized CPTAC3 09aae447-84ad-4549-b1aa-789dcb680a8d 6fa8ea064bf742b8a22fb28b6faf01e5 { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05338.RNA-Seq.genomic.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 951e9de5-82e0-46ce-a83b-9adf8ad6d86f.rna_seq.genomic.gdc_realn.bam 6504887075 BAM genomic harmonized CPTAC3 db401667-fc70-4d5b-bd95-d92d3838753f 745d7d5646709090d9bd56475099258f { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05338.RNA-Seq.R1_L008.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R1_001.fastq.gz 3333672847 FASTQ R1_L008 unaligned CPTAC3 8241771f-9643-4930-b2e7-9a475f409c7d 73d022874a6a788ced12a1e0faa80331 { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-05338.RNA-Seq.R2_L008.Tbm C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 210319_UNC31-K00269_0296_AHKT37BBXY_CTGCTTCC-GATAGATC_S30_L008_R2_001.fastq.gz 3541389231 FASTQ R2_L008 unaligned CPTAC3 2866a4a3-9138-4b5f-81f8-58f3e929f704 768d51e328c6d491640404960b72785a { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-05338.RNA-Seq.transcriptome.Tbm.hg38 C3L-05338 AML RNA-Seq tumor_bone_marrow CPT0303690002 951e9de5-82e0-46ce-a83b-9adf8ad6d86f.rna_seq.transcriptome.gdc_realn.bam 8850086914 BAM transcriptome harmonized CPTAC3 80640ec7-e9f6-48db-b6ba-b65048c7c118 b25be5984723f928082784f37a8e5fca { 'aliquot_tag': 'ALQ_25e599d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05338.WGS.Nbc C3L-05338 AML WGS buccal_normal CPT0303760001 CPT0303760001.WholeGenome.RP-2158.bam 47293953932 BAM aligned CPTAC3 ed8376a6-4e91-4c12-8b53-3de7e43338bd 9176b3a47b5f7fe5553ba91e5cfe526c { 'aliquot_tag': 'ALQ_f5e08c1b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05338.WGS.Nbc.hg38 C3L-05338 AML WGS buccal_normal CPT0303760001 34f8b20a-2fca-4b45-9186-825063365e7e_wgs_gdc_realn.bam 145590528581 BAM harmonized CPTAC3 1e9e7855-cdb9-4b37-b3ae-44e9650f3c71 a6d1e10b730ca32fae544e95cefa501f { 'aliquot_tag': 'ALQ_f5e08c1b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05338.WGS.Tbm C3L-05338 AML WGS tumor_bone_marrow CPT0303680002 CPT0303680002.WholeGenome.RP-2158.bam 64510996566 BAM aligned CPTAC3 9e3cf7b0-af37-4038-b126-07e7e1c7f387 f5171d4edc6e1d920279557ec36fafa1 { 'aliquot_tag': 'ALQ_1885b065', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05338.WGS.Tbm.hg38 C3L-05338 AML WGS tumor_bone_marrow CPT0303680002 d10673f3-3289-4c23-a8d5-5a2983adb6df_wgs_gdc_realn.bam 180510531787 BAM harmonized CPTAC3 296b2dfb-9d7b-46c4-a848-4f96f19bb99b 52013aa9605cf9a93b55897bbad2c105 { 'aliquot_tag': 'ALQ_1885b065', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05338.WXS.Nbc C3L-05338 AML WXS buccal_normal CPT0303760001 CPT0303760001.WholeExome.RP-1303.bam 29187740697 BAM aligned CPTAC3 26910fd8-ac41-4add-b4ae-1c1a2fd301b4 6d981e2b7e24bc27743506f2f5859573 { 'aliquot_tag': 'ALQ_f5e08c1b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05338.WXS.Nbc.hg38 C3L-05338 AML WXS buccal_normal CPT0303760001 34f8b20a-2fca-4b45-9186-825063365e7e_wxs_gdc_realn.bam 40043987846 BAM harmonized CPTAC3 1f8df55f-a261-4316-bb19-972442496f86 34820f7dfc28a42ac7e376c5d2c651ff { 'aliquot_tag': 'ALQ_f5e08c1b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05338.WXS.Tbm C3L-05338 AML WXS tumor_bone_marrow CPT0303680002 CPT0303680002.WholeExome.RP-1303.bam 30870352146 BAM aligned CPTAC3 8a102a76-2f4c-4ca6-a6af-1a4793b1dda9 01ce2357dc02c7e0742c1c07c5781597 { 'aliquot_tag': 'ALQ_1885b065', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05338.WXS.Tbm.hg38 C3L-05338 AML WXS tumor_bone_marrow CPT0303680002 d10673f3-3289-4c23-a8d5-5a2983adb6df_wxs_gdc_realn.bam 43084082849 BAM harmonized CPTAC3 0f344126-30a6-4718-bc90-4e1de755d276 2060dd6d4aec44e3ff2b8d5a20dfc58a { 'aliquot_tag': 'ALQ_1885b065', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05369.MethArray.Green.A C3L-05369 LSCC Methylation Array tissue_normal CPT0294480006 204372030015_R04C01_Grn.idat 13677905 IDAT Green NA CPTAC3 f5a79f0d-1a10-43d8-963c-685f261d9d66 b9796189bbec29d0836d54392b69c525 { 'aliquot_tag': 'ALQ_9fb3e491', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05369.MethArray.Green.T C3L-05369 LSCC Methylation Array tumor CPT0294450006 204367470131_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fcfa9bd6-869d-4965-a42c-7ad6617544de 55e96f5e8a2f0470c1e1ffcd94f6243a { 'aliquot_tag': 'ALQ_67232020', 'gdc_sample_type': 'Primary Tumor' } C3L-05369.MethArray.Red.A C3L-05369 LSCC Methylation Array tissue_normal CPT0294480006 204372030015_R04C01_Red.idat 13677905 IDAT Red NA CPTAC3 e2441776-a26a-483c-8d57-aebbd971647f 5896f469e52418e090c9bc7232d3c67b { 'aliquot_tag': 'ALQ_9fb3e491', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -17179,16 +18246,16 @@ C3L-05369.miRNA-Seq.A C3L-05369 LSCC miRNA-Seq tissue_normal CPT0294480009 20051 C3L-05369.miRNA-Seq.A.hg38 C3L-05369 LSCC miRNA-Seq tissue_normal CPT0294480009 a6045ff1-f560-4245-9d6a-6c33fac9c855_mirnaseq_gdc_realn.bam 332144186 BAM harmonized CPTAC3 b6b24ec4-5596-4143-8bfd-6f3a1e800ed0 f0e62c0691ef252cb0e48a5a14dfb235 { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05369.miRNA-Seq.T C3L-05369 LSCC miRNA-Seq tumor CPT0294450009 200325_UNC31-K00269_0272_AHHC2NBBXY_TACAGC_S19_L001_R1_001.unaln.bam 214404384 BAM unaligned CPTAC3 41f91b2e-603c-47dd-98a9-284aeffd84af 22c1f68524de7eea20da8408dd4e4e83 { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor' } C3L-05369.miRNA-Seq.T.hg38 C3L-05369 LSCC miRNA-Seq tumor CPT0294450009 cb095284-9f4b-4911-859b-68d96f6b1eeb_mirnaseq_gdc_realn.bam 236555962 BAM harmonized CPTAC3 32dc2d41-e5a9-4461-8a87-2d461d71b89e 5ee4a44672d96e7cc50b8c499c27e611 { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor' } -C3L-05369.RNA-Seq.chimeric.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 2db69415-4086-4c1f-9901-aa205048fb92.rna_seq.chimeric.gdc_realn.bam 33569124 BAM chimeric harmonized CPTAC3 d9bc820b-fc73-482d-af27-34f08ecb965c b5cf7d4b4e54e4c1b9da3bbe1c53e561 { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05369.RNA-Seq.chimeric.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 344864c6-2d79-43ce-a807-9bddb0b6f56a.rna_seq.chimeric.gdc_realn.bam 80570027 BAM chimeric harmonized CPTAC3 fb379352-4d42-43cd-ad34-b5fe231ee2ef ba4d88a2ee80ccf072abfd1bb936d0cb { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor' } -C3L-05369.RNA-Seq.genomic.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 2db69415-4086-4c1f-9901-aa205048fb92.rna_seq.genomic.gdc_realn.bam 8485640900 BAM genomic harmonized CPTAC3 df8ae01c-0847-408d-b1f0-419380b36caf 3706987e95ed90280738d7f9f5bc89bd { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05369.RNA-Seq.genomic.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 344864c6-2d79-43ce-a807-9bddb0b6f56a.rna_seq.genomic.gdc_realn.bam 6904407315 BAM genomic harmonized CPTAC3 dee36884-c848-4fee-a961-d168295ec4f7 65d6c7790c5b3a6151693ba5a6648a60 { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor' } -C3L-05369.RNA-Seq.R1_L006.A C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCGTAGTG-AGACTTGG_S24_L006_R1_001.fastq.gz 3843385000 FASTQ R1_L006 unaligned CPTAC3 23c565cb-ff39-4479-ba64-97c7208229d7 c326656ebb885bd7cf3e7a395ec4403c { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05369.RNA-Seq.R1_L007.T C3L-05369 LSCC RNA-Seq tumor CPT0294450009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTATGTTC-AACAGGAA_S27_L007_R1_001.fastq.gz 3566418089 FASTQ R1_L007 unaligned CPTAC3 ba9f0249-aaf6-4c46-8dc5-ec1a00ac7f7c db5b8aaa4e8591fdce377da5724599bb { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor' } -C3L-05369.RNA-Seq.R2_L006.A C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCGTAGTG-AGACTTGG_S24_L006_R2_001.fastq.gz 4754527121 FASTQ R2_L006 unaligned CPTAC3 9a8c552c-380a-4986-9f2d-f753e921b4fd 3d06eab17b5b4caab970444411d022c9 { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05369.RNA-Seq.R2_L007.T C3L-05369 LSCC RNA-Seq tumor CPT0294450009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTATGTTC-AACAGGAA_S27_L007_R2_001.fastq.gz 3657828327 FASTQ R2_L007 unaligned CPTAC3 341a6501-69f2-414c-895f-a6f6b917dc1e 84dd6b96e268586e1f41adf6cfc1302d { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor' } -C3L-05369.RNA-Seq.transcriptome.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 2db69415-4086-4c1f-9901-aa205048fb92.rna_seq.transcriptome.gdc_realn.bam 8576698091 BAM transcriptome harmonized CPTAC3 60fecc81-2805-4763-adcf-ade8edaf9211 4ded779cb27de3a0e5ba6175a48b1477 { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05369.RNA-Seq.transcriptome.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 344864c6-2d79-43ce-a807-9bddb0b6f56a.rna_seq.transcriptome.gdc_realn.bam 9382583820 BAM transcriptome harmonized CPTAC3 6be3700d-c5d3-4831-8e9f-180de464a102 4b6495bc0c0a9cffbda7bb4a849534e1 { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor' } +C3L-05369.RNA-Seq.chimeric.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 45266661-c19e-444e-959d-45eab45243c3.rna_seq.chimeric.gdc_realn.bam 33551406 BAM chimeric harmonized CPTAC3 2568ca61-658c-4394-9898-597d2b4efa7e 95ac5d4d8fd1f62822eb7b6d223ecd98 { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05369.RNA-Seq.chimeric.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 7c675bd1-6e2d-40c2-a80f-02c76157b961.rna_seq.chimeric.gdc_realn.bam 80549148 BAM chimeric harmonized CPTAC3 1f162186-aad1-4479-a043-581f216d06a0 274dca470be3d61afc0d7a8625fba86b { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor' } +C3L-05369.RNA-Seq.genomic.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 45266661-c19e-444e-959d-45eab45243c3.rna_seq.genomic.gdc_realn.bam 8487117861 BAM genomic harmonized CPTAC3 1efc78c8-8f00-4f2d-a21b-b7492db45b81 3ee7191b7fd36828ee2245add426b4db { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05369.RNA-Seq.genomic.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 7c675bd1-6e2d-40c2-a80f-02c76157b961.rna_seq.genomic.gdc_realn.bam 6905969106 BAM genomic harmonized CPTAC3 e9da3e64-9919-4836-b004-cde8ec413170 bd4c22edcf45b06bfdb23bc8d4699a53 { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor' } +C3L-05369.RNA-Seq.R1_L006.A C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCGTAGTG-AGACTTGG_S24_L006_R1_001.fastq.gz 3843385000 FASTQ R1_L006 unaligned CPTAC3 23c565cb-ff39-4479-ba64-97c7208229d7 c326656ebb885bd7cf3e7a395ec4403c { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-05369.RNA-Seq.R1_L007.T C3L-05369 LSCC RNA-Seq tumor CPT0294450009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTATGTTC-AACAGGAA_S27_L007_R1_001.fastq.gz 3566418089 FASTQ R1_L007 unaligned CPTAC3 ba9f0249-aaf6-4c46-8dc5-ec1a00ac7f7c db5b8aaa4e8591fdce377da5724599bb { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-05369.RNA-Seq.R2_L006.A C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 200505_UNC32-K00270_0246_BHH5F5BBXY_TCGTAGTG-AGACTTGG_S24_L006_R2_001.fastq.gz 4754527121 FASTQ R2_L006 unaligned CPTAC3 9a8c552c-380a-4986-9f2d-f753e921b4fd 3d06eab17b5b4caab970444411d022c9 { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-05369.RNA-Seq.R2_L007.T C3L-05369 LSCC RNA-Seq tumor CPT0294450009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTATGTTC-AACAGGAA_S27_L007_R2_001.fastq.gz 3657828327 FASTQ R2_L007 unaligned CPTAC3 341a6501-69f2-414c-895f-a6f6b917dc1e 84dd6b96e268586e1f41adf6cfc1302d { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-05369.RNA-Seq.transcriptome.A.hg38 C3L-05369 LSCC RNA-Seq tissue_normal CPT0294480009 45266661-c19e-444e-959d-45eab45243c3.rna_seq.transcriptome.gdc_realn.bam 9729688734 BAM transcriptome harmonized CPTAC3 fe3de7c4-a734-4e35-b40d-778ce6a4915c efdc49e62fee21d469f0b14f4bab658d { 'aliquot_tag': 'ALQ_f0cf900', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05369.RNA-Seq.transcriptome.T.hg38 C3L-05369 LSCC RNA-Seq tumor CPT0294450009 7c675bd1-6e2d-40c2-a80f-02c76157b961.rna_seq.transcriptome.gdc_realn.bam 10755963826 BAM transcriptome harmonized CPTAC3 ceef9de6-d251-4167-8d97-e5da653d304f d9a55edc4a7780b658c8e8a2c6616d2e { 'aliquot_tag': 'ALQ_f79c3db1', 'gdc_sample_type': 'Primary Tumor' } C3L-05369.WGS.N C3L-05369 LSCC WGS blood_normal CPT0294570002 CPT0294570002.WholeGenome.RP-2158.bam 24966812548 BAM aligned CPTAC3 d45011cb-cc8f-4973-bcb0-09c7332b85f5 af07abd4d3ad41b1582b3bdeeacdae3f { 'aliquot_tag': 'ALQ_d1d264fc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05369.WGS.N.hg38 C3L-05369 LSCC WGS blood_normal CPT0294570002 60330a1e-b890-4080-b328-a426cc600b86_wgs_gdc_realn.bam 74854230798 BAM harmonized CPTAC3 fd313034-153a-492c-9e39-5991db231b8b 9f1fe9867e3b7d7a945c7896f757fc91 { 'aliquot_tag': 'ALQ_d1d264fc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05369.WGS.T C3L-05369 LSCC WGS tumor CPT0294450006 CPT0294450006.WholeGenome.RP-2158.bam 26784354118 BAM aligned CPTAC3 293e5adf-8355-4331-9748-4fba8f0e393f 2d1d61d3933f123dd44333cf92567900 { 'aliquot_tag': 'ALQ_67232020', 'gdc_sample_type': 'Primary Tumor' } @@ -17203,11 +18270,11 @@ C3L-05386.MethArray.Green.Tpb C3L-05386 AML Methylation Array tumor_peripheral_b C3L-05386.MethArray.Red.Tpb C3L-05386 AML Methylation Array tumor_peripheral_blood CPT0262620001 203561450103_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 38f1717f-f595-4d1c-856f-eaa6532f7622 e5574fc078a89f35b35b547f3c346849 { 'aliquot_tag': 'ALQ_bc5fef0e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05386.miRNA-Seq.Tpb C3L-05386 AML miRNA-Seq tumor_peripheral_blood CPT0262630002 190828_UNC32-K00270_0200_BH7GVJBBXY_GGTAGC_S160_L008_R1_001.unaln.bam 274447132 BAM unaligned CPTAC3 b75c03df-2a12-458c-b3a1-a9fcb07de56e 379534782e627705dff6c925ced91a55 { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05386.miRNA-Seq.Tpb.hg38 C3L-05386 AML miRNA-Seq tumor_peripheral_blood CPT0262630002 1ef3e45a-f94b-4c35-b97d-cbbc08012367_mirnaseq_gdc_realn.bam 313355596 BAM harmonized CPTAC3 efd74a9f-87e4-4569-b4b9-3bf2921240f1 ae6636fa19fcd514b040c5016fbd6879 { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05386.RNA-Seq.chimeric.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 fc9ab0f9-f6a3-4cde-8d51-904160e099c5.rna_seq.chimeric.gdc_realn.bam 41591470 BAM chimeric harmonized CPTAC3 1fe79139-c897-43f6-8907-9a7fb6568ec3 e303017fc369817bca5cf7b01f25d268 { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05386.RNA-Seq.genomic.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 fc9ab0f9-f6a3-4cde-8d51-904160e099c5.rna_seq.genomic.gdc_realn.bam 9519519732 BAM genomic harmonized CPTAC3 f0c69f75-fe64-43d2-af0c-38ef2a1c00b7 2742a26f5a33eb2a25d149ad5146ce8b { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05386.RNA-Seq.R1_L003.Tpb C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 190702_UNC32-K00270_0187_AH7FK2BBXY_CCAAGTCT-AAGGATGA_S10_L003_R1_001.fastq.gz 4831265670 FASTQ R1_L003 unaligned CPTAC3 4fdd7460-7eab-46d5-a864-87e57245fa68 d2113543cba56dcc6e5ceb14912248c6 { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05386.RNA-Seq.R2_L003.Tpb C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 190702_UNC32-K00270_0187_AH7FK2BBXY_CCAAGTCT-AAGGATGA_S10_L003_R2_001.fastq.gz 5221498803 FASTQ R2_L003 unaligned CPTAC3 4f151513-bde8-4194-86ed-d3d9bd0b69a7 d106b7d3037c55e24f38c49c4747f0a5 { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05386.RNA-Seq.transcriptome.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 fc9ab0f9-f6a3-4cde-8d51-904160e099c5.rna_seq.transcriptome.gdc_realn.bam 10186065532 BAM transcriptome harmonized CPTAC3 afe8afab-4caf-49be-bd0b-5df96e8312a2 b38f4acb26af68f75ff0f0e8a0fde873 { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05386.RNA-Seq.chimeric.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 57bb5f76-1344-4d5c-afce-64be1046709e.rna_seq.chimeric.gdc_realn.bam 41570907 BAM chimeric harmonized CPTAC3 d1573cd6-9391-4a78-bbbd-ba6d9eb76f51 65d559e9df46f2707c889d0f5066d1c8 { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05386.RNA-Seq.genomic.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 57bb5f76-1344-4d5c-afce-64be1046709e.rna_seq.genomic.gdc_realn.bam 9520170101 BAM genomic harmonized CPTAC3 2e67e9b9-8e6f-412b-b912-7b4f5095868a 82e3c409992b37fe39d5db5cdd3023ec { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05386.RNA-Seq.R1_L003.Tpb C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 190702_UNC32-K00270_0187_AH7FK2BBXY_CCAAGTCT-AAGGATGA_S10_L003_R1_001.fastq.gz 4831265670 FASTQ R1_L003 unaligned CPTAC3 4fdd7460-7eab-46d5-a864-87e57245fa68 d2113543cba56dcc6e5ceb14912248c6 { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L003' } +C3L-05386.RNA-Seq.R2_L003.Tpb C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 190702_UNC32-K00270_0187_AH7FK2BBXY_CCAAGTCT-AAGGATGA_S10_L003_R2_001.fastq.gz 5221498803 FASTQ R2_L003 unaligned CPTAC3 4f151513-bde8-4194-86ed-d3d9bd0b69a7 d106b7d3037c55e24f38c49c4747f0a5 { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L003' } +C3L-05386.RNA-Seq.transcriptome.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood CPT0262630002 57bb5f76-1344-4d5c-afce-64be1046709e.rna_seq.transcriptome.gdc_realn.bam 11673242080 BAM transcriptome harmonized CPTAC3 799e31d8-454e-4f30-9fa2-c4d6ccdcb2d9 398091498cc5d9084136927ef6f9a5c8 { 'aliquot_tag': 'ALQ_18369704', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05386.WGS.Nbc C3L-05386 AML WGS buccal_normal CPT0262610002 CPT0262610002.WholeGenome.RP-1303.bam 84391701158 BAM aligned CPTAC3 9a9935b2-2d21-46df-a29e-354f9e5a4e4e 68927c84fda27b492fab08e23f48df09 { 'aliquot_tag': 'ALQ_62f6c464', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05386.WGS.Nbc.hg38 C3L-05386 AML WGS buccal_normal CPT0262610002 9271ecfc-7bb8-4e93-9b7c-11c500666325_wgs_gdc_realn.bam 119448197945 BAM harmonized CPTAC3 53b93788-0e38-4cb9-b5f2-818b0488012e 357456ce4b1ad8a44ce699618034f57f { 'aliquot_tag': 'ALQ_62f6c464', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05386.WGS.Tpb C3L-05386 AML WGS tumor_peripheral_blood CPT0262620001 CPT0262620001.WholeGenome.RP-1303.bam 72320206451 BAM aligned CPTAC3 6aed8445-69f8-4392-b669-b3e6e4612a41 ab8742fd65837386b7c3b1e561cdf057 { 'aliquot_tag': 'ALQ_bc5fef0e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } @@ -17216,13 +18283,22 @@ C3L-05386.WXS.Nbc C3L-05386 AML WXS buccal_normal CPT0262610002 CPT0262610002.Wh C3L-05386.WXS.Nbc.hg38 C3L-05386 AML WXS buccal_normal CPT0262610002 9271ecfc-7bb8-4e93-9b7c-11c500666325_wxs_gdc_realn.bam 32712126516 BAM harmonized CPTAC3 8236c897-0ac6-4158-b6b9-0335142cf267 7c9e2b7043775e44cf8a570c80a25118 { 'aliquot_tag': 'ALQ_62f6c464', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05386.WXS.Tpb C3L-05386 AML WXS tumor_peripheral_blood CPT0262620001 CPT0262620001.WholeExome.RP-1303.bam 17187190188 BAM aligned CPTAC3 09bb55a7-8481-4ca6-aa9d-996390f52107 0fba3b23d13ad92ee1b860b4be95b226 { 'aliquot_tag': 'ALQ_bc5fef0e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05386.WXS.Tpb.hg38 C3L-05386 AML WXS tumor_peripheral_blood CPT0262620001 e0497046-63a5-4b92-b60f-39b07deae642_wxs_gdc_realn.bam 23352315586 BAM harmonized CPTAC3 ad4db99e-f314-4049-915d-d80b7d6920d8 86a5b3644ebd4442ec99702a900257c6 { 'aliquot_tag': 'ALQ_bc5fef0e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05387.MethArray.Green.Tpb C3L-05387 AML Methylation Array tumor_peripheral_blood CPT0275090002 205987780161_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b5378fff-0286-434a-bbdb-da7a0068a8b9 a0994637c2c1771d89624e01e7c6d73a { 'aliquot_tag': 'ALQ_8dd252a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05387.MethArray.Red.Tpb C3L-05387 AML Methylation Array tumor_peripheral_blood CPT0275090002 205987780161_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 673879c4-58bf-41f1-8574-748bbb2471c4 2f86e063b100c1a9a8c6d987eb4bc458 { 'aliquot_tag': 'ALQ_8dd252a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05387.miRNA-Seq.Tpb C3L-05387 AML miRNA-Seq tumor_peripheral_blood CPT0275130002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATTTT_S7_L001_R1_001.unaln.bam 298465319 BAM unaligned CPTAC3 630d208b-adb4-413b-b6aa-48bf8905fd50 8d54c228acb7e7384491506ee7c57d14 { 'aliquot_tag': 'ALQ_c3e99ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05387.RNA-Seq.R1_L004.Tpb C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 211207_UNC32-K00270_0305_AHMW37BBXY_ATCCACTG-AGGTGCGT_S13_L004_R1_001.fastq.gz 3552138579 FASTQ R1_L004 unaligned CPTAC3 9079bc71-b14d-4ae8-9ce3-023aa2f2ff11 c916de42ba83f6ac84d5296c6c359477 { 'aliquot_tag': 'ALQ_c3e99ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05387.RNA-Seq.R2_L004.Tpb C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 211207_UNC32-K00270_0305_AHMW37BBXY_ATCCACTG-AGGTGCGT_S13_L004_R2_001.fastq.gz 3882337040 FASTQ R2_L004 unaligned CPTAC3 68a5d6f0-e119-426f-a564-b94fbf5ceb59 8e499c9d5396b1028a0e885e9c2dbd93 { 'aliquot_tag': 'ALQ_c3e99ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05387.miRNA-Seq.Tpb.hg38 C3L-05387 AML miRNA-Seq tumor_peripheral_blood CPT0275130002 f430fc97-5bbf-4f9b-bb22-52c4f9475a3f_mirnaseq_gdc_realn.bam 327933147 BAM harmonized CPTAC3 1fae3b67-999d-4f85-bfb7-bfa8df502d2b ed726eddabf26c8983185487ab7d86fc { 'aliquot_tag': 'ALQ_c3e99ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05387.RNA-Seq.chimeric.Tpb.hg38 C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 877d77ad-9f78-4390-888f-11c31218ba12.rna_seq.chimeric.gdc_realn.bam 666833248 BAM chimeric harmonized CPTAC3 71bdd64d-a6c7-497c-8e4f-1431b9464aec 58b86e905eadba8bef4a56ccce911d33 { 'aliquot_tag': 'ALQ_c3e99ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05387.RNA-Seq.genomic.Tpb.hg38 C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 877d77ad-9f78-4390-888f-11c31218ba12.rna_seq.genomic.gdc_realn.bam 7347126367 BAM genomic harmonized CPTAC3 033b5afb-eefb-4b11-9216-72c518bd67a7 64a8649968a60d190236b5b1fb3fce86 { 'aliquot_tag': 'ALQ_c3e99ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05387.RNA-Seq.R1_L004.Tpb C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 211207_UNC32-K00270_0305_AHMW37BBXY_ATCCACTG-AGGTGCGT_S13_L004_R1_001.fastq.gz 3552138579 FASTQ R1_L004 unaligned CPTAC3 9079bc71-b14d-4ae8-9ce3-023aa2f2ff11 c916de42ba83f6ac84d5296c6c359477 { 'aliquot_tag': 'ALQ_c3e99ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L004' } +C3L-05387.RNA-Seq.R2_L004.Tpb C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 211207_UNC32-K00270_0305_AHMW37BBXY_ATCCACTG-AGGTGCGT_S13_L004_R2_001.fastq.gz 3882337040 FASTQ R2_L004 unaligned CPTAC3 68a5d6f0-e119-426f-a564-b94fbf5ceb59 8e499c9d5396b1028a0e885e9c2dbd93 { 'aliquot_tag': 'ALQ_c3e99ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L004' } +C3L-05387.RNA-Seq.transcriptome.Tpb.hg38 C3L-05387 AML RNA-Seq tumor_peripheral_blood CPT0275130002 877d77ad-9f78-4390-888f-11c31218ba12.rna_seq.transcriptome.gdc_realn.bam 7952250491 BAM transcriptome harmonized CPTAC3 04ebdc8c-fe7b-47d0-9c92-0e63668abf87 7986ace27d63fe7ec0ec21da60e4a2e3 { 'aliquot_tag': 'ALQ_c3e99ac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05387.WGS.Nbc C3L-05387 AML WGS buccal_normal CPT0275080001 CPT0275080001.WholeGenome.RP-2158.bam 44651253231 BAM aligned CPTAC3 fecf52b4-a3f7-4e11-a384-4f52325fddbe 9a688cb88f8e0546442d2c05963931a6 { 'aliquot_tag': 'ALQ_29bb2aa2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05387.WGS.Nbc.hg38 C3L-05387 AML WGS buccal_normal CPT0275080001 34b3bbed-c713-4a6b-ab3d-e3b04d33c731_wgs_gdc_realn.bam 400133768733 BAM harmonized CPTAC3 4ddeb513-59b0-4e4b-b1e5-61cf1f7fb6fe e178dddbb0ed1d50a3c681a36146538a { 'aliquot_tag': 'ALQ_29bb2aa2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05387.WGS.Tpb C3L-05387 AML WGS tumor_peripheral_blood CPT0275090002 CPT0275090002.WholeGenome.RP-2158.bam 52291271279 BAM aligned CPTAC3 10ea385c-66dc-47d9-b3b3-886561f2e207 72d83a89882ef2f7e6aa34aac53be4e6 { 'aliquot_tag': 'ALQ_8dd252a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05387.WXS.Nbc C3L-05387 AML WXS buccal_normal CPT0275080001 CPT0275080001.WholeExome.RP-1303.bam 26721993786 BAM aligned CPTAC3 11f96ebf-4962-4f6b-80cd-f94737ca1a3d 230919e73081c24e5d14c1d0d42c8df4 { 'aliquot_tag': 'ALQ_29bb2aa2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05387.WXS.Nbc.hg38 C3L-05387 AML WXS buccal_normal CPT0275080001 34b3bbed-c713-4a6b-ab3d-e3b04d33c731_wxs_gdc_realn.bam 37711680308 BAM harmonized CPTAC3 244bf8e7-c556-45ac-89b8-7f2fb94e2ea6 c48614437228e54b3a12b4ef0644d019 { 'aliquot_tag': 'ALQ_29bb2aa2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05387.WXS.Tpb C3L-05387 AML WXS tumor_peripheral_blood CPT0275090002 CPT0275090002.WholeExome.RP-1303.bam 25699517261 BAM aligned CPTAC3 1c2d05f4-e728-4df5-9a5b-cf0632b50408 8e8d7e8c8015a62e643b1da3e82fe8bd { 'aliquot_tag': 'ALQ_8dd252a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05387.WXS.Tpb.hg38 C3L-05387 AML WXS tumor_peripheral_blood CPT0275090002 431ccf9c-42b9-480a-9aac-0cbfb7536a3a_wxs_gdc_realn.bam 35598798050 BAM harmonized CPTAC3 59889aba-57ce-481c-846c-47ca04ea6ece a7d5f9c8bf69f72707c2f9a0615c5347 { 'aliquot_tag': 'ALQ_8dd252a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05392.MethArray.Green.A C3L-05392 LSCC Methylation Array tissue_normal CPT0291650006 204367490043_R07C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e4943865-2992-4bfe-abe3-be20b504eaa6 f82af29769c1038a54d0a36cc9dc1711 { 'aliquot_tag': 'ALQ_78d3ae8c', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05392.MethArray.Green.T C3L-05392 LSCC Methylation Array tumor CPT0291630006 204367490093_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6d9b4672-c645-4974-a855-c20304dfe680 04fe15ea35640dc82d8dafeaca6715c6 { 'aliquot_tag': 'ALQ_f7935b2c', 'gdc_sample_type': 'Primary Tumor' } C3L-05392.MethArray.Red.A C3L-05392 LSCC Methylation Array tissue_normal CPT0291650006 204367490043_R07C01_Red.idat 13677880 IDAT Red NA CPTAC3 b2c69dca-9b74-41ab-9278-da57c9db35ae e2d663a9a85f6ea6e0b4180e23118ca7 { 'aliquot_tag': 'ALQ_78d3ae8c', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -17231,16 +18307,16 @@ C3L-05392.miRNA-Seq.A C3L-05392 LSCC miRNA-Seq tissue_normal CPT0291650009 20051 C3L-05392.miRNA-Seq.A.hg38 C3L-05392 LSCC miRNA-Seq tissue_normal CPT0291650009 6b65d0b5-e056-4859-812b-4e7633bc7209_mirnaseq_gdc_realn.bam 197979085 BAM harmonized CPTAC3 edbdaca7-16fc-4954-84a1-b2a2feae2803 a5c639033b6d8a939f63ed58f6b9c155 { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05392.miRNA-Seq.T C3L-05392 LSCC miRNA-Seq tumor CPT0291630009 200325_UNC31-K00269_0272_AHHC2NBBXY_CAAAAG_S4_L001_R1_001.unaln.bam 198358022 BAM unaligned CPTAC3 ecde02aa-9c6c-4174-b417-48c67d74e720 7cbeb32b4d5f32cfdc48f0e2bd1024b4 { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor' } C3L-05392.miRNA-Seq.T.hg38 C3L-05392 LSCC miRNA-Seq tumor CPT0291630009 5df162d1-cfe4-401b-8b2d-9c1400d6b387_mirnaseq_gdc_realn.bam 222906673 BAM harmonized CPTAC3 7ccbc0dc-368f-42d6-bbba-8adb04ff5e12 3b0510a29338ee3419b0e4eeeaa4b25d { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor' } -C3L-05392.RNA-Seq.chimeric.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 30ac3dec-8f58-4899-8830-c5568149eaf9.rna_seq.chimeric.gdc_realn.bam 33476595 BAM chimeric harmonized CPTAC3 86b46d10-9732-4dd9-905d-1e170d4761e1 9724975e1d2f9aeede492be4a93f4e17 { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05392.RNA-Seq.chimeric.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 39629122-2525-4f67-ac3f-9352bd39069c.rna_seq.chimeric.gdc_realn.bam 127703119 BAM chimeric harmonized CPTAC3 12f4a612-2879-4572-b0e8-11c97e98c98e 5ae3ebd66e82b67c2a3e98bed265550f { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor' } -C3L-05392.RNA-Seq.genomic.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 30ac3dec-8f58-4899-8830-c5568149eaf9.rna_seq.genomic.gdc_realn.bam 8861728068 BAM genomic harmonized CPTAC3 d7ef564d-01ff-4d0c-8ff2-f6be0e61e256 eb07a09756ea2d49df119b34b5b599ba { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05392.RNA-Seq.genomic.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 39629122-2525-4f67-ac3f-9352bd39069c.rna_seq.genomic.gdc_realn.bam 8131029299 BAM genomic harmonized CPTAC3 6ea135a8-ba1a-4aaa-af82-0e823ef25522 b4549fa43b4b9fe278c206fe11972afb { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor' } -C3L-05392.RNA-Seq.R1_L003.T C3L-05392 LSCC RNA-Seq tumor CPT0291630009 200428_UNC31-K00269_0275_AHGCJVBBXY_GACGTCTT-GGTTCACC_S12_L003_R1_001.fastq.gz 4109366063 FASTQ R1_L003 unaligned CPTAC3 a09393b8-579c-4c23-aaf9-0601c79d9bca d6456fd8df3cd39b593e4e5dab0aa77c { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor' } -C3L-05392.RNA-Seq.R1_L005.A C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 200505_UNC32-K00270_0246_BHH5F5BBXY_TACCGAGG-CCTGAACT_S20_L005_R1_001.fastq.gz 3855943575 FASTQ R1_L005 unaligned CPTAC3 359e3754-8a38-4bb2-ab30-f45104721810 de0695cc9f97993699daf35d522085a1 { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05392.RNA-Seq.R2_L003.T C3L-05392 LSCC RNA-Seq tumor CPT0291630009 200428_UNC31-K00269_0275_AHGCJVBBXY_GACGTCTT-GGTTCACC_S12_L003_R2_001.fastq.gz 4321086964 FASTQ R2_L003 unaligned CPTAC3 1c3d507a-a999-446e-a60c-f1d0861764ee 47fbe7de7ecf697f6ad76056d2c6a565 { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor' } -C3L-05392.RNA-Seq.R2_L005.A C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 200505_UNC32-K00270_0246_BHH5F5BBXY_TACCGAGG-CCTGAACT_S20_L005_R2_001.fastq.gz 4857414271 FASTQ R2_L005 unaligned CPTAC3 dca97796-2c4c-4d14-8074-a9614c031baf d3d6c7efd1f417555f754850af3ea80f { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05392.RNA-Seq.transcriptome.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 30ac3dec-8f58-4899-8830-c5568149eaf9.rna_seq.transcriptome.gdc_realn.bam 8463830467 BAM transcriptome harmonized CPTAC3 9fbe7bb8-c723-4e83-a279-7785b30cc2ed dd6fbf863d6b30c04e607cf752698c8f { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05392.RNA-Seq.transcriptome.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 39629122-2525-4f67-ac3f-9352bd39069c.rna_seq.transcriptome.gdc_realn.bam 10191223537 BAM transcriptome harmonized CPTAC3 728803de-69a9-4962-b96f-bfba4c2d93bb 66e8f30a8e0c36072b751ee2c6141ccb { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor' } +C3L-05392.RNA-Seq.chimeric.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 1997db3f-38ee-42d6-89c8-fc6c261b7292.rna_seq.chimeric.gdc_realn.bam 33477624 BAM chimeric harmonized CPTAC3 6fbe9d35-318f-4a60-b621-37ec63b82f25 3c9ac688fc3c5b675f274da8882da687 { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05392.RNA-Seq.chimeric.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 163d56d2-6813-4fab-9fcc-2bc8fff16d12.rna_seq.chimeric.gdc_realn.bam 127724772 BAM chimeric harmonized CPTAC3 7bf8ed8c-75cc-457d-aa59-8553000f2572 8883b3e414cea46b4ec4657c09632c00 { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor' } +C3L-05392.RNA-Seq.genomic.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 1997db3f-38ee-42d6-89c8-fc6c261b7292.rna_seq.genomic.gdc_realn.bam 8863756412 BAM genomic harmonized CPTAC3 6b73e767-a5fe-4fd7-9b9e-993f5fc0c111 94a36cda743f81ad49c0bfd7ff21fe80 { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05392.RNA-Seq.genomic.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 163d56d2-6813-4fab-9fcc-2bc8fff16d12.rna_seq.genomic.gdc_realn.bam 8133192376 BAM genomic harmonized CPTAC3 97e3b87f-7a4b-47bf-9d84-313908c7ed07 c56ff3edcfc10cae0da365e70c05b5e8 { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor' } +C3L-05392.RNA-Seq.R1_L003.T C3L-05392 LSCC RNA-Seq tumor CPT0291630009 200428_UNC31-K00269_0275_AHGCJVBBXY_GACGTCTT-GGTTCACC_S12_L003_R1_001.fastq.gz 4109366063 FASTQ R1_L003 unaligned CPTAC3 a09393b8-579c-4c23-aaf9-0601c79d9bca d6456fd8df3cd39b593e4e5dab0aa77c { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-05392.RNA-Seq.R1_L005.A C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 200505_UNC32-K00270_0246_BHH5F5BBXY_TACCGAGG-CCTGAACT_S20_L005_R1_001.fastq.gz 3855943575 FASTQ R1_L005 unaligned CPTAC3 359e3754-8a38-4bb2-ab30-f45104721810 de0695cc9f97993699daf35d522085a1 { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-05392.RNA-Seq.R2_L003.T C3L-05392 LSCC RNA-Seq tumor CPT0291630009 200428_UNC31-K00269_0275_AHGCJVBBXY_GACGTCTT-GGTTCACC_S12_L003_R2_001.fastq.gz 4321086964 FASTQ R2_L003 unaligned CPTAC3 1c3d507a-a999-446e-a60c-f1d0861764ee 47fbe7de7ecf697f6ad76056d2c6a565 { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-05392.RNA-Seq.R2_L005.A C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 200505_UNC32-K00270_0246_BHH5F5BBXY_TACCGAGG-CCTGAACT_S20_L005_R2_001.fastq.gz 4857414271 FASTQ R2_L005 unaligned CPTAC3 dca97796-2c4c-4d14-8074-a9614c031baf d3d6c7efd1f417555f754850af3ea80f { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-05392.RNA-Seq.transcriptome.A.hg38 C3L-05392 LSCC RNA-Seq tissue_normal CPT0291650009 1997db3f-38ee-42d6-89c8-fc6c261b7292.rna_seq.transcriptome.gdc_realn.bam 9527933149 BAM transcriptome harmonized CPTAC3 9af6af3a-534d-40d7-986a-63138f48b7c5 3e967ad65ee676f330ab353ae869a1ea { 'aliquot_tag': 'ALQ_e86cb31d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05392.RNA-Seq.transcriptome.T.hg38 C3L-05392 LSCC RNA-Seq tumor CPT0291630009 163d56d2-6813-4fab-9fcc-2bc8fff16d12.rna_seq.transcriptome.gdc_realn.bam 11449562732 BAM transcriptome harmonized CPTAC3 9607041b-7403-4427-a7c9-c23d8dbd9521 d1146f4281db94d5fd8a4192c1e28a8c { 'aliquot_tag': 'ALQ_672c46bd', 'gdc_sample_type': 'Primary Tumor' } C3L-05392.WGS.N C3L-05392 LSCC WGS blood_normal CPT0291760002 CPT0291760002.WholeGenome.RP-2158.bam 24914133422 BAM aligned CPTAC3 d83e9394-8f7d-4a75-a2ab-15aa2988911c e6cf8a01411897fbe046ea58c57128d4 { 'aliquot_tag': 'ALQ_f342c3e0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05392.WGS.N.hg38 C3L-05392 LSCC WGS blood_normal CPT0291760002 74d7b8bf-5f4b-4e3e-841e-5d59c2afba8a_wgs_gdc_realn.bam 73845649668 BAM harmonized CPTAC3 1b5199ab-2746-4ae7-ba6a-aacdf07a0429 e0364f88436f2896171333cf650d34b1 { 'aliquot_tag': 'ALQ_f342c3e0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05392.WGS.T C3L-05392 LSCC WGS tumor CPT0291630006 CPT0291630006.WholeGenome.RP-2158.bam 23806348550 BAM aligned CPTAC3 3b63f153-6139-448d-aef3-3834c5f9f27c cc3c4954a67be5a3b9211643ff7f5f23 { 'aliquot_tag': 'ALQ_f7935b2c', 'gdc_sample_type': 'Primary Tumor' } @@ -17260,16 +18336,16 @@ C3L-05393.miRNA-Seq.A.hg38 C3L-05393 LSCC miRNA-Seq tissue_normal CPT0290320009 C3L-05393.miRNA-Seq.T C3L-05393 LSCC miRNA-Seq tumor CPT0290280009 200325_UNC31-K00269_0272_AHHC2NBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 161582929 BAM unaligned CPTAC3 6d56707f-1228-46cb-b2c7-5fac92d9b03f 7881c758956d5b763ea025dfdc28a444 { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } C3L-05393.miRNA-Seq.T C3L-05393 LSCC miRNA-Seq tumor CPT0290280009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGAGC_S1_L001_R1_001.unaln.bam 143249433 BAM unaligned CPTAC3 bf4ed63a-209e-4a22-8004-f80b0352815b bb5ca3eb0f19c1d6eaae6f6d1555ff2c { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } C3L-05393.miRNA-Seq.T.hg38 C3L-05393 LSCC miRNA-Seq tumor CPT0290280009 57e82e40-197a-4611-b409-0b2afd579a91_mirnaseq_gdc_realn.bam 349737022 BAM harmonized CPTAC3 a9f68953-7aaa-48cb-9a75-851fe1d915e8 d1c76db48a2e10afd1412d4117828767 { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } -C3L-05393.RNA-Seq.chimeric.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 41620011-5d39-4d36-876e-4b4d76e4460c.rna_seq.chimeric.gdc_realn.bam 27719584 BAM chimeric harmonized CPTAC3 73d469cb-1791-43ff-b544-049e076496e4 b350ffa2331c4c67711c7a729e78c389 { 'aliquot_tag': 'ALQ_acf6f50a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05393.RNA-Seq.chimeric.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 3896733f-55ed-4cfc-9c81-037a08228052.rna_seq.chimeric.gdc_realn.bam 145226582 BAM chimeric harmonized CPTAC3 5356f139-95d3-4a92-88c8-cf1ef1b18d77 8c39e8496c143b148f8cff08e3223603 { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } -C3L-05393.RNA-Seq.genomic.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 41620011-5d39-4d36-876e-4b4d76e4460c.rna_seq.genomic.gdc_realn.bam 7705565588 BAM genomic harmonized CPTAC3 eb5b540d-32d0-44af-bde9-911be97de5c8 c2cfd0e1ab134c07d76a178709aa4020 { 'aliquot_tag': 'ALQ_acf6f50a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05393.RNA-Seq.genomic.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 3896733f-55ed-4cfc-9c81-037a08228052.rna_seq.genomic.gdc_realn.bam 7754972401 BAM genomic harmonized CPTAC3 cb15316b-3ba8-49d2-bdc1-066d5231529e fb7c1492a5292ac45e8e08a368e6140e { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } -C3L-05393.RNA-Seq.R1_L003.T C3L-05393 LSCC RNA-Seq tumor CPT0290280009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGGCCGGT-TAGAGCGC_S10_L003_R1_001.fastq.gz 3895478243 FASTQ R1_L003 unaligned CPTAC3 a556603a-5bd3-43db-9ebd-1699738d2b6c 90c979ada1fdb13a1e121916aacbad92 { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } -C3L-05393.RNA-Seq.R1_L004.A C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 3453640744 FASTQ R1_L004 unaligned CPTAC3 b4c58689-6157-4915-a5e8-e2d2016488ee 1f5960d4090eb4d76ca5a6a6058a60fd { 'aliquot_tag': 'ALQ_acf6f50a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05393.RNA-Seq.R2_L003.T C3L-05393 LSCC RNA-Seq tumor CPT0290280009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGGCCGGT-TAGAGCGC_S10_L003_R2_001.fastq.gz 4153209470 FASTQ R2_L003 unaligned CPTAC3 fb564896-7d1f-494d-bb2d-da4dd09dd1f5 481358563068846e80179000115539d5 { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } -C3L-05393.RNA-Seq.R2_L004.A C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 4119153049 FASTQ R2_L004 unaligned CPTAC3 bac04af1-f7b1-4e50-a673-3aa24bd26922 9288a6253e1d11d502b0457c08dd6cda { 'aliquot_tag': 'ALQ_acf6f50a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05393.RNA-Seq.transcriptome.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 41620011-5d39-4d36-876e-4b4d76e4460c.rna_seq.transcriptome.gdc_realn.bam 7992576097 BAM transcriptome harmonized CPTAC3 9e1a7dac-9b8d-48f4-954d-71ffd3b7d174 9084867641a2084959849a6c9d63a2ca { 'aliquot_tag': 'ALQ_acf6f50a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05393.RNA-Seq.transcriptome.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 3896733f-55ed-4cfc-9c81-037a08228052.rna_seq.transcriptome.gdc_realn.bam 11313002259 BAM transcriptome harmonized CPTAC3 b7adcd1f-a97b-4686-9666-09a9cc6a461a 739cb2d32fd865fd615fd787fb05d97a { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } +C3L-05393.RNA-Seq.chimeric.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 7d9fdda8-aada-4193-8513-67b0021d1f8b.rna_seq.chimeric.gdc_realn.bam 27717025 BAM chimeric harmonized CPTAC3 08de02fb-960b-44a9-bc0d-4671900594e8 8a50c20945b0faf47f9ed01887971a09 { 'aliquot_tag': 'ALQ_acf6f50a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05393.RNA-Seq.chimeric.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 f5e51a85-3f2e-43d1-b9fa-454381e83063.rna_seq.chimeric.gdc_realn.bam 145218422 BAM chimeric harmonized CPTAC3 e60eddfc-9352-4ae6-a458-a0823273535f 238619d5a4a328762eddf17f6d82c29e { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } +C3L-05393.RNA-Seq.genomic.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 7d9fdda8-aada-4193-8513-67b0021d1f8b.rna_seq.genomic.gdc_realn.bam 7707277080 BAM genomic harmonized CPTAC3 649b1426-5c10-405f-8733-9e66c9e75079 0d1f9c99759359b128180f495e58ae6a { 'aliquot_tag': 'ALQ_acf6f50a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05393.RNA-Seq.genomic.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 f5e51a85-3f2e-43d1-b9fa-454381e83063.rna_seq.genomic.gdc_realn.bam 7756700946 BAM genomic harmonized CPTAC3 dc3bc6e7-8f1c-4ee1-b3db-7aecd33d2430 4abd2a3f73a938e07f34ba1ef59d3efd { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } +C3L-05393.RNA-Seq.R1_L003.T C3L-05393 LSCC RNA-Seq tumor CPT0290280009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGGCCGGT-TAGAGCGC_S10_L003_R1_001.fastq.gz 3895478243 FASTQ R1_L003 unaligned CPTAC3 a556603a-5bd3-43db-9ebd-1699738d2b6c 90c979ada1fdb13a1e121916aacbad92 { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-05393.RNA-Seq.R1_L004.A C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 3453640744 FASTQ R1_L004 unaligned CPTAC3 b4c58689-6157-4915-a5e8-e2d2016488ee 1f5960d4090eb4d76ca5a6a6058a60fd { 'aliquot_tag': 'ALQ_acf6f50a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-05393.RNA-Seq.R2_L003.T C3L-05393 LSCC RNA-Seq tumor CPT0290280009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGGCCGGT-TAGAGCGC_S10_L003_R2_001.fastq.gz 4153209470 FASTQ R2_L003 unaligned CPTAC3 fb564896-7d1f-494d-bb2d-da4dd09dd1f5 481358563068846e80179000115539d5 { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-05393.RNA-Seq.R2_L004.A C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 200505_UNC32-K00270_0246_BHH5F5BBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 4119153049 FASTQ R2_L004 unaligned CPTAC3 bac04af1-f7b1-4e50-a673-3aa24bd26922 9288a6253e1d11d502b0457c08dd6cda { 'aliquot_tag': 'ALQ_acf6f50a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-05393.RNA-Seq.transcriptome.A.hg38 C3L-05393 LSCC RNA-Seq tissue_normal CPT0290320009 7d9fdda8-aada-4193-8513-67b0021d1f8b.rna_seq.transcriptome.gdc_realn.bam 9074869649 BAM transcriptome harmonized CPTAC3 5066acaa-df8e-4071-925f-3404bd601ef3 15803f0713fbf6bb3b713f3be877a92a { 'aliquot_tag': 'ALQ_acf6f50a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05393.RNA-Seq.transcriptome.T.hg38 C3L-05393 LSCC RNA-Seq tumor CPT0290280009 f5e51a85-3f2e-43d1-b9fa-454381e83063.rna_seq.transcriptome.gdc_realn.bam 12754030184 BAM transcriptome harmonized CPTAC3 245fac10-5e3e-426d-8ebe-a7c7d8394d11 a33c5d015a0afa6fd979e750298940fe { 'aliquot_tag': 'ALQ_2d1a3e0e', 'gdc_sample_type': 'Primary Tumor' } C3L-05393.WGS.N C3L-05393 LSCC WGS blood_normal CPT0291290002 CPT0291290002.WholeGenome.RP-2158.bam 36053093360 BAM aligned CPTAC3 62bf051a-4479-441c-8a19-c39bfc635713 9422a363b0424cab8eeeeed9473c3b52 { 'aliquot_tag': 'ALQ_21dfc582', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05393.WGS.N C3L-05393 LSCC WGS blood_normal CPT0291290002 CPT0291290002.WholeGenome.RP-2158.bam 36111111145 BAM aligned CPTAC3 70d39eb6-7162-4cb4-b839-0ccadfa3b5f8 12e26ba310b2e5108423e7d8c6e053b8 { 'aliquot_tag': 'ALQ_21dfc582', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05393.WGS.N.hg38 C3L-05393 LSCC WGS blood_normal CPT0291290002 7269aee9-f189-4c9a-b48d-1425ee35e613_wgs_gdc_realn.bam 108828980923 BAM harmonized CPTAC3 59b8c0b8-7499-4bd3-b267-17d81f32b6b5 fe31974536faf612d2254283c0940c83 { 'aliquot_tag': 'ALQ_21dfc582', 'gdc_sample_type': 'Blood Derived Normal' } @@ -17290,16 +18366,16 @@ C3L-05394.miRNA-Seq.A.hg38 C3L-05394 LSCC miRNA-Seq tissue_normal CPT0291470009 C3L-05394.miRNA-Seq.T C3L-05394 LSCC miRNA-Seq tumor CPT0291310009 200325_UNC31-K00269_0272_AHHC2NBBXY_ATTCCT_S3_L001_R1_001.unaln.bam 148926599 BAM unaligned CPTAC3 f618b210-587b-494f-abb0-ea39465b3588 db5a87ef32e31828ff97169398ff734f { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } C3L-05394.miRNA-Seq.T C3L-05394 LSCC miRNA-Seq tumor CPT0291310009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L001_R1_001.unaln.bam 135528627 BAM unaligned CPTAC3 417a9012-f772-4948-862e-49080422e1e8 82128a37050178dc0f95e709db56f313 { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } C3L-05394.miRNA-Seq.T.hg38 C3L-05394 LSCC miRNA-Seq tumor CPT0291310009 2fd0bfaa-fd4b-473f-a164-9dd929079073_mirnaseq_gdc_realn.bam 310104649 BAM harmonized CPTAC3 1af907cd-6f68-450e-b813-c792f9ba8072 208003eb232e7f52c3612f8ff9ade67e { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } -C3L-05394.RNA-Seq.chimeric.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 5c2cc4ee-9d66-496d-aee3-7534dd843fad.rna_seq.chimeric.gdc_realn.bam 34640677 BAM chimeric harmonized CPTAC3 1151cba3-ca5f-47d9-a899-8cbc916c516d bd9676950fa9fc2882ff6731d7bc3464 { 'aliquot_tag': 'ALQ_df644176', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05394.RNA-Seq.chimeric.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e8c58792-9a2e-4bfb-8a50-3e3479f7e6f5.rna_seq.chimeric.gdc_realn.bam 162037369 BAM chimeric harmonized CPTAC3 4487be2b-c0f6-42b1-b72b-4a3a873fb483 227fc84ced3ca6671661784fd6d2dcbc { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } -C3L-05394.RNA-Seq.genomic.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 5c2cc4ee-9d66-496d-aee3-7534dd843fad.rna_seq.genomic.gdc_realn.bam 7981401464 BAM genomic harmonized CPTAC3 cff34452-e98e-4122-a742-d2db6d23adcd 2dda8d3b41665ba3110927972ed52998 { 'aliquot_tag': 'ALQ_df644176', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05394.RNA-Seq.genomic.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e8c58792-9a2e-4bfb-8a50-3e3479f7e6f5.rna_seq.genomic.gdc_realn.bam 7261757365 BAM genomic harmonized CPTAC3 ac4ef997-3193-4b61-8410-d6c1e9a015da 57f1bc7033da811df5926d15784132c5 { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } -C3L-05394.RNA-Seq.R1_L003.T C3L-05394 LSCC RNA-Seq tumor CPT0291310009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGTACTCC-AACCTGTT_S11_L003_R1_001.fastq.gz 3692123957 FASTQ R1_L003 unaligned CPTAC3 0b944030-64c1-4363-96f5-9ea000c7e7d7 e2d4a046b0798b8f10849ca1fb53e48f { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } -C3L-05394.RNA-Seq.R1_L004.A C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 200505_UNC32-K00270_0246_BHH5F5BBXY_AATGCCTC-TCGATCCA_S13_L004_R1_001.fastq.gz 3695094357 FASTQ R1_L004 unaligned CPTAC3 d45c61c9-dbeb-4b69-99f2-cb3fc507d2e4 82c743e6cdd2e02235ea4d60185d9834 { 'aliquot_tag': 'ALQ_df644176', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05394.RNA-Seq.R2_L003.T C3L-05394 LSCC RNA-Seq tumor CPT0291310009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGTACTCC-AACCTGTT_S11_L003_R2_001.fastq.gz 3889134637 FASTQ R2_L003 unaligned CPTAC3 8e103b76-ff3a-4295-9043-aeab73954d21 b74fd579b2b67dc9a7530493d8814f19 { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } -C3L-05394.RNA-Seq.R2_L004.A C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 200505_UNC32-K00270_0246_BHH5F5BBXY_AATGCCTC-TCGATCCA_S13_L004_R2_001.fastq.gz 4457552008 FASTQ R2_L004 unaligned CPTAC3 76e1c6df-9cd5-4ba2-857f-48fb3a3f24a3 b0ee10eb8cdbc8cfa719292784c5dced { 'aliquot_tag': 'ALQ_df644176', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05394.RNA-Seq.transcriptome.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 5c2cc4ee-9d66-496d-aee3-7534dd843fad.rna_seq.transcriptome.gdc_realn.bam 7779548003 BAM transcriptome harmonized CPTAC3 89bfe5bc-2f54-40a3-b378-9f1ffafe5ef0 68898140abd004ba94e91df82b01ff9d { 'aliquot_tag': 'ALQ_df644176', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05394.RNA-Seq.transcriptome.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e8c58792-9a2e-4bfb-8a50-3e3479f7e6f5.rna_seq.transcriptome.gdc_realn.bam 10055848305 BAM transcriptome harmonized CPTAC3 ffac127e-5877-4988-9910-6a39bd89dfb8 8042808505eb09dacd827aaf6f307d01 { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } +C3L-05394.RNA-Seq.chimeric.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 906e207a-0d4e-474f-928b-d7fb9935847a.rna_seq.chimeric.gdc_realn.bam 34621438 BAM chimeric harmonized CPTAC3 ad93e862-8a5c-4e69-8786-76c807a843f1 c252d104fe38f559fdaee3728fb4ac1a { 'aliquot_tag': 'ALQ_df644176', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05394.RNA-Seq.chimeric.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e50cccaa-b0ea-4a04-ac0b-a356b5912a44.rna_seq.chimeric.gdc_realn.bam 162021695 BAM chimeric harmonized CPTAC3 3ca03feb-a119-4aed-80f7-3046d7d40520 fa7ef33a54ce94b1973b692e7088710d { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } +C3L-05394.RNA-Seq.genomic.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 906e207a-0d4e-474f-928b-d7fb9935847a.rna_seq.genomic.gdc_realn.bam 7982388630 BAM genomic harmonized CPTAC3 751f33b3-7972-482f-978d-59068f5ef6d1 b50c529c039478c13754bf5a6cec18b4 { 'aliquot_tag': 'ALQ_df644176', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05394.RNA-Seq.genomic.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e50cccaa-b0ea-4a04-ac0b-a356b5912a44.rna_seq.genomic.gdc_realn.bam 7263056352 BAM genomic harmonized CPTAC3 34c369f4-fa4b-4476-90d4-c2218091cf99 9331cbc8c391a6586735e85505613fea { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } +C3L-05394.RNA-Seq.R1_L003.T C3L-05394 LSCC RNA-Seq tumor CPT0291310009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGTACTCC-AACCTGTT_S11_L003_R1_001.fastq.gz 3692123957 FASTQ R1_L003 unaligned CPTAC3 0b944030-64c1-4363-96f5-9ea000c7e7d7 e2d4a046b0798b8f10849ca1fb53e48f { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-05394.RNA-Seq.R1_L004.A C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 200505_UNC32-K00270_0246_BHH5F5BBXY_AATGCCTC-TCGATCCA_S13_L004_R1_001.fastq.gz 3695094357 FASTQ R1_L004 unaligned CPTAC3 d45c61c9-dbeb-4b69-99f2-cb3fc507d2e4 82c743e6cdd2e02235ea4d60185d9834 { 'aliquot_tag': 'ALQ_df644176', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-05394.RNA-Seq.R2_L003.T C3L-05394 LSCC RNA-Seq tumor CPT0291310009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGTACTCC-AACCTGTT_S11_L003_R2_001.fastq.gz 3889134637 FASTQ R2_L003 unaligned CPTAC3 8e103b76-ff3a-4295-9043-aeab73954d21 b74fd579b2b67dc9a7530493d8814f19 { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-05394.RNA-Seq.R2_L004.A C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 200505_UNC32-K00270_0246_BHH5F5BBXY_AATGCCTC-TCGATCCA_S13_L004_R2_001.fastq.gz 4457552008 FASTQ R2_L004 unaligned CPTAC3 76e1c6df-9cd5-4ba2-857f-48fb3a3f24a3 b0ee10eb8cdbc8cfa719292784c5dced { 'aliquot_tag': 'ALQ_df644176', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-05394.RNA-Seq.transcriptome.A.hg38 C3L-05394 LSCC RNA-Seq tissue_normal CPT0291470009 906e207a-0d4e-474f-928b-d7fb9935847a.rna_seq.transcriptome.gdc_realn.bam 8837587110 BAM transcriptome harmonized CPTAC3 7e233b37-6b03-4954-9ffe-e3ea57cceeb1 fd4d09f96e1d7277b2d4c5feadd693f3 { 'aliquot_tag': 'ALQ_df644176', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05394.RNA-Seq.transcriptome.T.hg38 C3L-05394 LSCC RNA-Seq tumor CPT0291310009 e50cccaa-b0ea-4a04-ac0b-a356b5912a44.rna_seq.transcriptome.gdc_realn.bam 11531986091 BAM transcriptome harmonized CPTAC3 490a9d90-5f2d-4326-b0c3-2be3dcc85f45 58ad3a5b803e781465385806a6e0101d { 'aliquot_tag': 'ALQ_4d21846e', 'gdc_sample_type': 'Primary Tumor' } C3L-05394.WGS.N C3L-05394 LSCC WGS blood_normal CPT0291580002 CPT0291580002.WholeGenome.RP-2158.bam 29237077219 BAM aligned CPTAC3 e8168ade-b21c-4f25-944c-9ec9071fd3dc ea5a3be1f942e20cd514dfccb7c090f6 { 'aliquot_tag': 'ALQ_1badc8a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05394.WGS.N.hg38 C3L-05394 LSCC WGS blood_normal CPT0291580002 9b3dd1c0-f10d-41a8-8dfd-3a069eb847ce_wgs_gdc_realn.bam 86067227450 BAM harmonized CPTAC3 b5981ecb-e6bb-4c3b-aaf1-2cac92483bf8 34982803bf99f590821ac21a62c5e8ca { 'aliquot_tag': 'ALQ_1badc8a', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05394.WGS.T C3L-05394 LSCC WGS tumor CPT0291310006 CPT0291310006.WholeGenome.RP-2158.bam 24070384674 BAM aligned CPTAC3 390b128b-7731-40b1-8234-7d768dd895b4 648e80223fb66ae733991c434050ee25 { 'aliquot_tag': 'ALQ_dd9e99ff', 'gdc_sample_type': 'Primary Tumor' } @@ -17318,16 +18394,16 @@ C3L-05397.miRNA-Seq.A C3L-05397 LSCC miRNA-Seq tissue_normal CPT0289970009 20051 C3L-05397.miRNA-Seq.A.hg38 C3L-05397 LSCC miRNA-Seq tissue_normal CPT0289970009 63467abd-b13f-4657-8dbd-e6452e2c3325_mirnaseq_gdc_realn.bam 242562457 BAM harmonized CPTAC3 0f7a95ff-4115-4541-abba-309000996323 4edaed7b411bb9ce3b2b31ca6fa83061 { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05397.miRNA-Seq.T C3L-05397 LSCC miRNA-Seq tumor CPT0289940009 200325_UNC31-K00269_0272_AHHC2NBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 233867305 BAM unaligned CPTAC3 b3bffd97-e745-428d-9c86-692ec242a210 141052f6622cfaad53d6861fdf26c4c4 { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor' } C3L-05397.miRNA-Seq.T.hg38 C3L-05397 LSCC miRNA-Seq tumor CPT0289940009 cd9281fd-a48e-4338-a0d1-2c1535d94336_mirnaseq_gdc_realn.bam 266074621 BAM harmonized CPTAC3 c8c8bad5-7f93-4e19-90b1-9e9c5f19b8d7 2a3d02393a0509af19333e32e5c02959 { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor' } -C3L-05397.RNA-Seq.chimeric.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 33029e39-679d-4a4c-9285-f5e432917b7b.rna_seq.chimeric.gdc_realn.bam 36038300 BAM chimeric harmonized CPTAC3 e193ab56-1458-44e0-8deb-6df3d622dc15 2bce6b975680bcfe9734b2ae4b6251bc { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05397.RNA-Seq.chimeric.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 525e6969-3c81-402a-ae09-72de6d1e2957.rna_seq.chimeric.gdc_realn.bam 85041875 BAM chimeric harmonized CPTAC3 c7dad48d-83ec-4d98-b3e3-73d048d66966 102ebfbf556ce885126b79503314f026 { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor' } -C3L-05397.RNA-Seq.genomic.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 33029e39-679d-4a4c-9285-f5e432917b7b.rna_seq.genomic.gdc_realn.bam 9586896995 BAM genomic harmonized CPTAC3 29e5181a-d587-47a4-bd64-5fd351de3718 857cc0e5d15a34498f886a6dbc488e5b { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05397.RNA-Seq.genomic.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 525e6969-3c81-402a-ae09-72de6d1e2957.rna_seq.genomic.gdc_realn.bam 7753856538 BAM genomic harmonized CPTAC3 92402644-d9e8-4ff6-a753-559ed4a5e3e6 0e04e6c15a3520b9d1947da1f2d9c175 { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor' } -C3L-05397.RNA-Seq.R1_L003.T C3L-05397 LSCC RNA-Seq tumor CPT0289940009 200428_UNC31-K00269_0275_AHGCJVBBXY_CAATTAAC-CGAGATAT_S9_L003_R1_001.fastq.gz 4063269281 FASTQ R1_L003 unaligned CPTAC3 bb6600c1-f592-415f-9155-f9960a85e71d c594ef69c71838a0d93d7f7541bc2be0 { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor' } -C3L-05397.RNA-Seq.R1_L004.A C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 200505_UNC32-K00270_0246_BHH5F5BBXY_TTACAGGA-TGACAAGC_S16_L004_R1_001.fastq.gz 4417718201 FASTQ R1_L004 unaligned CPTAC3 1b529f0d-edb3-4bf6-8dfe-ca4a677128d0 445d2393e882fdcda66b6660938bfae6 { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05397.RNA-Seq.R2_L003.T C3L-05397 LSCC RNA-Seq tumor CPT0289940009 200428_UNC31-K00269_0275_AHGCJVBBXY_CAATTAAC-CGAGATAT_S9_L003_R2_001.fastq.gz 4215380053 FASTQ R2_L003 unaligned CPTAC3 c0b8ab1b-0380-4814-98bb-1f51e2cfefec f8fc95585f169192d886be7e58d158ec { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor' } -C3L-05397.RNA-Seq.R2_L004.A C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 200505_UNC32-K00270_0246_BHH5F5BBXY_TTACAGGA-TGACAAGC_S16_L004_R2_001.fastq.gz 5301940546 FASTQ R2_L004 unaligned CPTAC3 22fa13f7-d267-4e8b-a38f-cf0bfcab2b04 dff1759f45b2a79721ca5abe6070e140 { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05397.RNA-Seq.transcriptome.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 33029e39-679d-4a4c-9285-f5e432917b7b.rna_seq.transcriptome.gdc_realn.bam 9524675981 BAM transcriptome harmonized CPTAC3 3ecd4080-ca3e-4c50-b5f0-b2d8f256937a 52cb7c6ee622960f4a3c2ad1010b2ea8 { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05397.RNA-Seq.transcriptome.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 525e6969-3c81-402a-ae09-72de6d1e2957.rna_seq.transcriptome.gdc_realn.bam 10551231500 BAM transcriptome harmonized CPTAC3 eb39c2fd-fa3b-4cc7-a916-e252e8bc45ba 273df370f6c05a95ed853f4afa3f14cb { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor' } +C3L-05397.RNA-Seq.chimeric.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 ba39f4be-bfff-483e-bb4a-44567e9be65d.rna_seq.chimeric.gdc_realn.bam 36018240 BAM chimeric harmonized CPTAC3 31ca5539-9ccb-4baa-9bc7-dd6ab12ced25 a0aeded708540a30b82a15c234982d98 { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05397.RNA-Seq.chimeric.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 fbfe3e31-f6f9-48ae-ba50-6710775ab642.rna_seq.chimeric.gdc_realn.bam 85016384 BAM chimeric harmonized CPTAC3 c00a03d0-07ad-4baf-a7a1-84ff5ddad195 02136973892e658a3437c90c176df47c { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor' } +C3L-05397.RNA-Seq.genomic.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 ba39f4be-bfff-483e-bb4a-44567e9be65d.rna_seq.genomic.gdc_realn.bam 9588176218 BAM genomic harmonized CPTAC3 1515d1e0-8907-4eac-90fc-c8a0ffddfabe af528be7a1936e95b87fb237449d207c { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05397.RNA-Seq.genomic.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 fbfe3e31-f6f9-48ae-ba50-6710775ab642.rna_seq.genomic.gdc_realn.bam 7755040002 BAM genomic harmonized CPTAC3 3a61442f-7d7e-40c5-bea0-9b849f02186d 6b8d4e9cf2070e148b5066590124c2ce { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor' } +C3L-05397.RNA-Seq.R1_L003.T C3L-05397 LSCC RNA-Seq tumor CPT0289940009 200428_UNC31-K00269_0275_AHGCJVBBXY_CAATTAAC-CGAGATAT_S9_L003_R1_001.fastq.gz 4063269281 FASTQ R1_L003 unaligned CPTAC3 bb6600c1-f592-415f-9155-f9960a85e71d c594ef69c71838a0d93d7f7541bc2be0 { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3L-05397.RNA-Seq.R1_L004.A C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 200505_UNC32-K00270_0246_BHH5F5BBXY_TTACAGGA-TGACAAGC_S16_L004_R1_001.fastq.gz 4417718201 FASTQ R1_L004 unaligned CPTAC3 1b529f0d-edb3-4bf6-8dfe-ca4a677128d0 445d2393e882fdcda66b6660938bfae6 { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-05397.RNA-Seq.R2_L003.T C3L-05397 LSCC RNA-Seq tumor CPT0289940009 200428_UNC31-K00269_0275_AHGCJVBBXY_CAATTAAC-CGAGATAT_S9_L003_R2_001.fastq.gz 4215380053 FASTQ R2_L003 unaligned CPTAC3 c0b8ab1b-0380-4814-98bb-1f51e2cfefec f8fc95585f169192d886be7e58d158ec { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3L-05397.RNA-Seq.R2_L004.A C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 200505_UNC32-K00270_0246_BHH5F5BBXY_TTACAGGA-TGACAAGC_S16_L004_R2_001.fastq.gz 5301940546 FASTQ R2_L004 unaligned CPTAC3 22fa13f7-d267-4e8b-a38f-cf0bfcab2b04 dff1759f45b2a79721ca5abe6070e140 { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-05397.RNA-Seq.transcriptome.A.hg38 C3L-05397 LSCC RNA-Seq tissue_normal CPT0289970009 ba39f4be-bfff-483e-bb4a-44567e9be65d.rna_seq.transcriptome.gdc_realn.bam 10803761445 BAM transcriptome harmonized CPTAC3 74777277-5316-4ecd-b257-66b4f1bf0907 bf7540a47077cf365e6644065ca24023 { 'aliquot_tag': 'ALQ_9cbf1c51', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05397.RNA-Seq.transcriptome.T.hg38 C3L-05397 LSCC RNA-Seq tumor CPT0289940009 fbfe3e31-f6f9-48ae-ba50-6710775ab642.rna_seq.transcriptome.gdc_realn.bam 12064333549 BAM transcriptome harmonized CPTAC3 8c47cf5f-fa6b-40f2-9208-69ebaa100c77 046f971f7b6bb6b90909577c0a626909 { 'aliquot_tag': 'ALQ_db1f6681', 'gdc_sample_type': 'Primary Tumor' } C3L-05397.WGS.N C3L-05397 LSCC WGS blood_normal CPT0290060002 CPT0290060002.WholeGenome.RP-2158.bam 20043165656 BAM aligned CPTAC3 ac8c750b-5805-4927-94cb-9cd7864b7135 cebd6e5bc8654b2d55339f3775950859 { 'aliquot_tag': 'ALQ_4830f8ec', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05397.WGS.N.hg38 C3L-05397 LSCC WGS blood_normal CPT0290060002 b722d6b5-e10d-4dc5-8cbf-4aacdcfbb671_wgs_gdc_realn.bam 58919124493 BAM harmonized CPTAC3 051ce0e0-be4e-4962-b5e0-6ec0e635ea84 4fd98483194ec3ea8eb44cc28f713ebe { 'aliquot_tag': 'ALQ_4830f8ec', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05397.WGS.T C3L-05397 LSCC WGS tumor CPT0289940006 CPT0289940006.WholeGenome.RP-2158.bam 28240835053 BAM aligned CPTAC3 0cf704f0-b7c4-46f9-be72-065803dea054 0981ba86a0a23ee4f11ca9f863c4492f { 'aliquot_tag': 'ALQ_4ba07b10', 'gdc_sample_type': 'Primary Tumor' } @@ -17346,16 +18422,16 @@ C3L-05398.miRNA-Seq.A C3L-05398 LSCC miRNA-Seq tissue_normal CPT0289780009 20051 C3L-05398.miRNA-Seq.A.hg38 C3L-05398 LSCC miRNA-Seq tissue_normal CPT0289780009 c6ef0b24-64c9-4615-81e8-a721c058b08f_mirnaseq_gdc_realn.bam 282678508 BAM harmonized CPTAC3 08c31a82-d751-4ed7-aea7-0f2b152d4f54 5cd5aa956a18ae54c037cf2468dd2bc3 { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05398.miRNA-Seq.T C3L-05398 LSCC miRNA-Seq tumor CPT0289770009 200224_UNC31-K00269_0267_AHC722BBXY_GGTAGC_S24_L006_R1_001.unaln.bam 209853782 BAM unaligned CPTAC3 faf6655c-3b07-4a33-bb38-e2b65612e852 b5706589cc0e49275169b4189fc5c239 { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor' } C3L-05398.miRNA-Seq.T.hg38 C3L-05398 LSCC miRNA-Seq tumor CPT0289770009 0f86b032-ad3c-4b3d-8a3e-24543c9c18dc_mirnaseq_gdc_realn.bam 231977990 BAM harmonized CPTAC3 cb1cab26-0c9c-4080-8ad6-a410e0f4b1f5 dede333cd823d4d14b88a0e0141b5022 { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor' } -C3L-05398.RNA-Seq.chimeric.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 b1b4f1d8-58ba-4089-956b-17c1e888b27d.rna_seq.chimeric.gdc_realn.bam 36000586 BAM chimeric harmonized CPTAC3 fa0952bf-0b61-4537-a466-49fe1823a460 e0ca6140d895a842336c1523c4c5f2c2 { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05398.RNA-Seq.chimeric.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 1260e6f7-91b0-4c2d-b58c-4f3684951fe3.rna_seq.chimeric.gdc_realn.bam 98649460 BAM chimeric harmonized CPTAC3 5d2d2fe5-0169-4405-8c97-768608eb83ff d433a62dcb41aef39b430fc744c5f77c { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor' } -C3L-05398.RNA-Seq.genomic.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 b1b4f1d8-58ba-4089-956b-17c1e888b27d.rna_seq.genomic.gdc_realn.bam 9458621412 BAM genomic harmonized CPTAC3 eb2a689d-8d42-4102-ac83-8f0813c326f0 279ab71f7c9fd77419f751e5556f1308 { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05398.RNA-Seq.genomic.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 1260e6f7-91b0-4c2d-b58c-4f3684951fe3.rna_seq.genomic.gdc_realn.bam 8941933489 BAM genomic harmonized CPTAC3 6d705a6a-ba07-4211-a414-524bfef20f45 8b8e31b2dec7cac15284cce5effc8b43 { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor' } -C3L-05398.RNA-Seq.R1_L002.T C3L-05398 LSCC RNA-Seq tumor CPT0289770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTCTACAC-GCCAAGGT_S8_L002_R1_001.fastq.gz 4516879160 FASTQ R1_L002 unaligned CPTAC3 a764f9f2-fbb8-412e-a9d6-ddbe753b6c34 4b4d895e771c3ac3a51928696b48ce56 { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor' } -C3L-05398.RNA-Seq.R1_L004.A C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 200505_UNC32-K00270_0246_BHH5F5BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R1_001.fastq.gz 4347614522 FASTQ R1_L004 unaligned CPTAC3 559e0a4d-43e7-4356-8844-a67519deb855 b8a24e8d813eaa182abd4af8acfadc95 { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05398.RNA-Seq.R2_L002.T C3L-05398 LSCC RNA-Seq tumor CPT0289770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTCTACAC-GCCAAGGT_S8_L002_R2_001.fastq.gz 4841907943 FASTQ R2_L002 unaligned CPTAC3 efe1ce9f-52c4-4fe9-973a-4f8fdee733cd 61dbb12da6d389d6e65f0e56f3cdb8d9 { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor' } -C3L-05398.RNA-Seq.R2_L004.A C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 200505_UNC32-K00270_0246_BHH5F5BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R2_001.fastq.gz 5305242192 FASTQ R2_L004 unaligned CPTAC3 518ff125-0abf-4891-9441-934761829e97 6c0511574fbf79f558bf7eaa39784d9f { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05398.RNA-Seq.transcriptome.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 b1b4f1d8-58ba-4089-956b-17c1e888b27d.rna_seq.transcriptome.gdc_realn.bam 10139454501 BAM transcriptome harmonized CPTAC3 869aed6d-8ad4-4da8-9e23-190695ba9bc8 060645fcb81f554852ce2de92d561f75 { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05398.RNA-Seq.transcriptome.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 1260e6f7-91b0-4c2d-b58c-4f3684951fe3.rna_seq.transcriptome.gdc_realn.bam 10990377122 BAM transcriptome harmonized CPTAC3 33bde6f8-d0b4-485f-9d3c-027d578b1345 69d050b8723dba4748aaec73cf6d6a3e { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor' } +C3L-05398.RNA-Seq.chimeric.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 508f97cb-97bc-480c-88be-21d4ffc5f0fd.rna_seq.chimeric.gdc_realn.bam 35977335 BAM chimeric harmonized CPTAC3 62cb30a4-1abc-4b20-a379-31bdea0ad946 25776e551b941e93f915cc8d912a1925 { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05398.RNA-Seq.chimeric.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 70c932bf-46e0-49d3-bd62-6c325b24e1f3.rna_seq.chimeric.gdc_realn.bam 98634446 BAM chimeric harmonized CPTAC3 94be9d2e-2d21-46c4-8c63-3b7388c34d91 a9580304f5e58fc982818a2b767dac71 { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor' } +C3L-05398.RNA-Seq.genomic.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 508f97cb-97bc-480c-88be-21d4ffc5f0fd.rna_seq.genomic.gdc_realn.bam 9460138664 BAM genomic harmonized CPTAC3 582c3e71-57eb-47f2-bd0c-9a4933a8edc9 abdc709052b09ba9a6f9ecca385f4b6c { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05398.RNA-Seq.genomic.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 70c932bf-46e0-49d3-bd62-6c325b24e1f3.rna_seq.genomic.gdc_realn.bam 8943998485 BAM genomic harmonized CPTAC3 a974c42f-d140-4c51-93a0-56f85332dc8a 00d3262fe7f8b21c935d49198c1a5dcf { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor' } +C3L-05398.RNA-Seq.R1_L002.T C3L-05398 LSCC RNA-Seq tumor CPT0289770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTCTACAC-GCCAAGGT_S8_L002_R1_001.fastq.gz 4516879160 FASTQ R1_L002 unaligned CPTAC3 a764f9f2-fbb8-412e-a9d6-ddbe753b6c34 4b4d895e771c3ac3a51928696b48ce56 { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3L-05398.RNA-Seq.R1_L004.A C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 200505_UNC32-K00270_0246_BHH5F5BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R1_001.fastq.gz 4347614522 FASTQ R1_L004 unaligned CPTAC3 559e0a4d-43e7-4356-8844-a67519deb855 b8a24e8d813eaa182abd4af8acfadc95 { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3L-05398.RNA-Seq.R2_L002.T C3L-05398 LSCC RNA-Seq tumor CPT0289770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTCTACAC-GCCAAGGT_S8_L002_R2_001.fastq.gz 4841907943 FASTQ R2_L002 unaligned CPTAC3 efe1ce9f-52c4-4fe9-973a-4f8fdee733cd 61dbb12da6d389d6e65f0e56f3cdb8d9 { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3L-05398.RNA-Seq.R2_L004.A C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 200505_UNC32-K00270_0246_BHH5F5BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R2_001.fastq.gz 5305242192 FASTQ R2_L004 unaligned CPTAC3 518ff125-0abf-4891-9441-934761829e97 6c0511574fbf79f558bf7eaa39784d9f { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3L-05398.RNA-Seq.transcriptome.A.hg38 C3L-05398 LSCC RNA-Seq tissue_normal CPT0289780009 508f97cb-97bc-480c-88be-21d4ffc5f0fd.rna_seq.transcriptome.gdc_realn.bam 11538109716 BAM transcriptome harmonized CPTAC3 d86399bc-5a27-4ddf-9db3-ffed7318fa42 ec6e2c876755fe1794d0496a3f53fb57 { 'aliquot_tag': 'ALQ_24e5eaf0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05398.RNA-Seq.transcriptome.T.hg38 C3L-05398 LSCC RNA-Seq tumor CPT0289770009 70c932bf-46e0-49d3-bd62-6c325b24e1f3.rna_seq.transcriptome.gdc_realn.bam 12390633136 BAM transcriptome harmonized CPTAC3 d75094ae-79fa-4198-933b-10b838b8fff7 f6c015047a0137378eeb414297eb8bc8 { 'aliquot_tag': 'ALQ_a6b57d21', 'gdc_sample_type': 'Primary Tumor' } C3L-05398.WGS.N C3L-05398 LSCC WGS blood_normal CPT0289890002 CPT0289890002.WholeGenome.RP-2158.bam 22166431043 BAM aligned CPTAC3 afe82521-b42a-4564-a57d-60a3c973d526 9593638f0233431b9771c57d37191951 { 'aliquot_tag': 'ALQ_7f01a81d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05398.WGS.N.hg38 C3L-05398 LSCC WGS blood_normal CPT0289890002 b2d4cbfa-fc45-4f6c-b41d-675846d7c828_wgs_gdc_realn.bam 65940184957 BAM harmonized CPTAC3 f3085b9f-ee54-42e0-8e81-374a8cdbee7a c77414e792da1050339d90fe33133356 { 'aliquot_tag': 'ALQ_7f01a81d', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05398.WGS.T C3L-05398 LSCC WGS tumor CPT0289770006 CPT0289770006.WholeGenome.RP-2158.bam 35078359327 BAM aligned CPTAC3 29e6c3e4-832f-420f-a93e-2333cf07d63c 6aabbe7a31cd3472494df69113a1e91d { 'aliquot_tag': 'ALQ_360a60b0', 'gdc_sample_type': 'Primary Tumor' } @@ -17375,16 +18451,16 @@ C3L-05399.miRNA-Seq.A C3L-05399 LSCC miRNA-Seq tissue_normal CPT0292210009 20051 C3L-05399.miRNA-Seq.A.hg38 C3L-05399 LSCC miRNA-Seq tissue_normal CPT0292210009 08cb4000-0b8f-4c9a-bfa2-a9b748fb296b_mirnaseq_gdc_realn.bam 275549651 BAM harmonized CPTAC3 04fc4299-3fc6-4fa7-b490-579e42ec465e d31c3a2c87cb351cb6e0b1635afaf502 { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05399.miRNA-Seq.T C3L-05399 LSCC miRNA-Seq tumor CPT0292150006 200224_UNC31-K00269_0267_AHC722BBXY_GCCAAT_S6_L006_R1_001.unaln.bam 256427944 BAM unaligned CPTAC3 df259b80-70fc-4d88-8e11-f673b9183e99 cafcdb2a4b3746bcc3530ff2ecfdcfdc { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor' } C3L-05399.miRNA-Seq.T.hg38 C3L-05399 LSCC miRNA-Seq tumor CPT0292150006 5c939937-4bfa-4ada-bc15-0ea949ba843f_mirnaseq_gdc_realn.bam 285826870 BAM harmonized CPTAC3 17e8cfd0-2f7a-4254-8f25-272d63502c3a bfa6c0ad19cbf65b357dbd9b8c89e062 { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor' } -C3L-05399.RNA-Seq.chimeric.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 b71df57a-fef3-4991-a7eb-d0c07863027a.rna_seq.chimeric.gdc_realn.bam 34709274 BAM chimeric harmonized CPTAC3 75014f78-cf09-4193-b43f-d1eb160d4cf1 a896eff7b2bc831fa43b73cbc0bcae50 { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05399.RNA-Seq.chimeric.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 67324a9c-00de-4b2e-ba24-312fc40f6627.rna_seq.chimeric.gdc_realn.bam 88621130 BAM chimeric harmonized CPTAC3 ce26a57c-3155-458c-85a2-185b7f792b49 e7d0f647c2eae571452e98d25574d754 { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor' } -C3L-05399.RNA-Seq.genomic.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 b71df57a-fef3-4991-a7eb-d0c07863027a.rna_seq.genomic.gdc_realn.bam 9381827038 BAM genomic harmonized CPTAC3 94b7be7e-aebc-40d4-bb34-b1635525d179 2c8fba03c0022af03020caf2df14405b { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05399.RNA-Seq.genomic.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 67324a9c-00de-4b2e-ba24-312fc40f6627.rna_seq.genomic.gdc_realn.bam 7504442686 BAM genomic harmonized CPTAC3 9e6fbc1f-2996-4ac2-b945-349b937c6d98 96d59121fd1178360aa5d9c61ea43e5e { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor' } -C3L-05399.RNA-Seq.R1_L005.A C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 200505_UNC32-K00270_0246_BHH5F5BBXY_AGCCTCAT-AGTAGAGA_S17_L005_R1_001.fastq.gz 4375558197 FASTQ R1_L005 unaligned CPTAC3 54b80256-8772-4b8d-9a7f-ebe7fd0df3f9 b41e20884df30ff3d9379e19023aed26 { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05399.RNA-Seq.R1_L006.T C3L-05399 LSCC RNA-Seq tumor CPT0292150006 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGGTGGCA-TCCTGTAA_S22_L006_R1_001.fastq.gz 3771340480 FASTQ R1_L006 unaligned CPTAC3 3cc607b5-5a8e-4109-ac61-0059723dbfa6 722bc509d4a5918124de4778b06d0849 { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor' } -C3L-05399.RNA-Seq.R2_L005.A C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 200505_UNC32-K00270_0246_BHH5F5BBXY_AGCCTCAT-AGTAGAGA_S17_L005_R2_001.fastq.gz 5243812287 FASTQ R2_L005 unaligned CPTAC3 8d4dbbef-5e02-4842-aeec-e5c0ab187b00 0734dfd836ed6fc484c675a6b76d6336 { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05399.RNA-Seq.R2_L006.T C3L-05399 LSCC RNA-Seq tumor CPT0292150006 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGGTGGCA-TCCTGTAA_S22_L006_R2_001.fastq.gz 3965071810 FASTQ R2_L006 unaligned CPTAC3 896aac7d-de87-4317-ab43-c555fae45f42 d408ea1fa04b5885c6d41c20390f1145 { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor' } -C3L-05399.RNA-Seq.transcriptome.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 b71df57a-fef3-4991-a7eb-d0c07863027a.rna_seq.transcriptome.gdc_realn.bam 9630455505 BAM transcriptome harmonized CPTAC3 676a487a-eef4-43ea-8989-f4f23712f8d9 8af314702989c709a3478e9c25e168fc { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05399.RNA-Seq.transcriptome.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 67324a9c-00de-4b2e-ba24-312fc40f6627.rna_seq.transcriptome.gdc_realn.bam 8639083494 BAM transcriptome harmonized CPTAC3 95d7d071-21d4-46f2-99f3-d5190c2773a4 5d17d7e0e8d5fa9718b2aa4d297e0ea2 { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor' } +C3L-05399.RNA-Seq.chimeric.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 e3774ce5-4e71-480c-b7be-63b0447752b5.rna_seq.chimeric.gdc_realn.bam 34690553 BAM chimeric harmonized CPTAC3 8a408785-bd51-46bd-863a-208e121217a7 cfb9826fc86a78c67d199de9c849db49 { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05399.RNA-Seq.chimeric.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 4369da23-fee9-4221-9b1c-12e51f9ca673.rna_seq.chimeric.gdc_realn.bam 88596085 BAM chimeric harmonized CPTAC3 b66bfb1c-503e-473d-be07-0579754987d7 0c43af9eaff91f8767b64ac8b94e4485 { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor' } +C3L-05399.RNA-Seq.genomic.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 e3774ce5-4e71-480c-b7be-63b0447752b5.rna_seq.genomic.gdc_realn.bam 9382949745 BAM genomic harmonized CPTAC3 c3f148a8-e7df-46e6-a37a-66bc1b1d753c 5b101f8aed88f8a22b1cfaaaf03e4515 { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05399.RNA-Seq.genomic.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 4369da23-fee9-4221-9b1c-12e51f9ca673.rna_seq.genomic.gdc_realn.bam 7505844880 BAM genomic harmonized CPTAC3 84a0f3b7-4baa-4836-b2ed-dd6cc4d82d81 fd1ea7873e80481f175887cf12aa071c { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor' } +C3L-05399.RNA-Seq.R1_L005.A C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 200505_UNC32-K00270_0246_BHH5F5BBXY_AGCCTCAT-AGTAGAGA_S17_L005_R1_001.fastq.gz 4375558197 FASTQ R1_L005 unaligned CPTAC3 54b80256-8772-4b8d-9a7f-ebe7fd0df3f9 b41e20884df30ff3d9379e19023aed26 { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-05399.RNA-Seq.R1_L006.T C3L-05399 LSCC RNA-Seq tumor CPT0292150006 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGGTGGCA-TCCTGTAA_S22_L006_R1_001.fastq.gz 3771340480 FASTQ R1_L006 unaligned CPTAC3 3cc607b5-5a8e-4109-ac61-0059723dbfa6 722bc509d4a5918124de4778b06d0849 { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3L-05399.RNA-Seq.R2_L005.A C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 200505_UNC32-K00270_0246_BHH5F5BBXY_AGCCTCAT-AGTAGAGA_S17_L005_R2_001.fastq.gz 5243812287 FASTQ R2_L005 unaligned CPTAC3 8d4dbbef-5e02-4842-aeec-e5c0ab187b00 0734dfd836ed6fc484c675a6b76d6336 { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-05399.RNA-Seq.R2_L006.T C3L-05399 LSCC RNA-Seq tumor CPT0292150006 200428_UNC32-K00270_0243_AHG3Y3BBXY_TGGTGGCA-TCCTGTAA_S22_L006_R2_001.fastq.gz 3965071810 FASTQ R2_L006 unaligned CPTAC3 896aac7d-de87-4317-ab43-c555fae45f42 d408ea1fa04b5885c6d41c20390f1145 { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3L-05399.RNA-Seq.transcriptome.A.hg38 C3L-05399 LSCC RNA-Seq tissue_normal CPT0292210009 e3774ce5-4e71-480c-b7be-63b0447752b5.rna_seq.transcriptome.gdc_realn.bam 10926535761 BAM transcriptome harmonized CPTAC3 e4762b53-ec07-4264-8942-67fdd2308d80 a309c757669119086beeb48fcbd6a920 { 'aliquot_tag': 'ALQ_b7954d56', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05399.RNA-Seq.transcriptome.T.hg38 C3L-05399 LSCC RNA-Seq tumor CPT0292150006 4369da23-fee9-4221-9b1c-12e51f9ca673.rna_seq.transcriptome.gdc_realn.bam 9776364121 BAM transcriptome harmonized CPTAC3 ee082981-2a07-424c-ad81-ad000a5c9164 24b55788f7db9b6173f4f2c6bfb71d1a { 'aliquot_tag': 'ALQ_543e84a9', 'gdc_sample_type': 'Primary Tumor' } C3L-05399.WGS.N C3L-05399 LSCC WGS blood_normal CPT0292300002 CPT0292300002.WholeGenome.RP-2158.bam 29098002847 BAM aligned CPTAC3 f4cf7ae7-71fe-47b2-b355-32ec611bab04 ed1ecc10769cb4801cc5558776f91a30 { 'aliquot_tag': 'ALQ_d67b6ecb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05399.WGS.N.hg38 C3L-05399 LSCC WGS blood_normal CPT0292300002 b7a0ca13-78c2-4771-a5ed-4cf45eeb5b64_wgs_gdc_realn.bam 84751565821 BAM harmonized CPTAC3 dd68a938-11e8-40d0-b712-e83bde34b0bf 33f33a1a541438b04e7ab25047670b21 { 'aliquot_tag': 'ALQ_d67b6ecb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05399.WGS.T C3L-05399 LSCC WGS tumor CPT0292150009 CPT0292150009.WholeGenome.RP-2158.bam 28893837928 BAM aligned CPTAC3 b0cab097-d50e-4eca-a5a4-f794bca0288c 254307958ba942f644c3936031a1b491 { 'aliquot_tag': 'ALQ_c4819938', 'gdc_sample_type': 'Primary Tumor' } @@ -17403,16 +18479,16 @@ C3L-05411.miRNA-Seq.A C3L-05411 LSCC miRNA-Seq tissue_normal CPT0294290009 20051 C3L-05411.miRNA-Seq.A.hg38 C3L-05411 LSCC miRNA-Seq tissue_normal CPT0294290009 33b214a7-e157-4d31-abde-627c50d76713_mirnaseq_gdc_realn.bam 301914047 BAM harmonized CPTAC3 464567ec-27db-4e9f-8d01-325863113294 57b6650edfd32930295ad314b1dd73c7 { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05411.miRNA-Seq.T C3L-05411 LSCC miRNA-Seq tumor CPT0293160009 200325_UNC31-K00269_0272_AHHC2NBBXY_GACGAC_S17_L001_R1_001.unaln.bam 227657933 BAM unaligned CPTAC3 049338ba-5110-4839-9bf8-bbc9cb0edece 28398fe2352469cc2f060e8f2aa24f53 { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor' } C3L-05411.miRNA-Seq.T.hg38 C3L-05411 LSCC miRNA-Seq tumor CPT0293160009 8c83d60f-98d3-4be1-93b2-63c47802e40a_mirnaseq_gdc_realn.bam 245528846 BAM harmonized CPTAC3 22636ca5-07f5-46fe-a9f8-fde9791def46 a8aa1151571a6c748c2c70e35b6736db { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05411.RNA-Seq.chimeric.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 78cd2c73-3328-4a0f-9b32-f62ec6363821.rna_seq.chimeric.gdc_realn.bam 28127355 BAM chimeric harmonized CPTAC3 5b5d40da-b97f-4ad8-bf8b-2f7576f3f8c7 97ce4398413ee5981d5f2cd4d144c578 { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05411.RNA-Seq.chimeric.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 2e435c3b-aa0d-40f1-b52c-dbcc428cd60f.rna_seq.chimeric.gdc_realn.bam 62200847 BAM chimeric harmonized CPTAC3 008d7799-113c-4637-8181-475ab37e4b33 798018e32cd3d3775c38820604de901d { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05411.RNA-Seq.genomic.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 78cd2c73-3328-4a0f-9b32-f62ec6363821.rna_seq.genomic.gdc_realn.bam 7531289778 BAM genomic harmonized CPTAC3 fd445345-07be-483c-8c1f-5f5fd642f9d9 836838c0c79306ec716cb77dfd83533f { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05411.RNA-Seq.genomic.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 2e435c3b-aa0d-40f1-b52c-dbcc428cd60f.rna_seq.genomic.gdc_realn.bam 8302619335 BAM genomic harmonized CPTAC3 cfa1a89e-6170-45c0-9872-17d62dd90e82 34e42ce88814708ffff7ebbe791ab178 { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05411.RNA-Seq.R1_L005.A C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 200505_UNC32-K00270_0246_BHH5F5BBXY_GATTCTGC-GACGAGAG_S19_L005_R1_001.fastq.gz 3405054575 FASTQ R1_L005 unaligned CPTAC3 3342b740-1f04-480f-ae1d-17341e98ca9c e36ab2e1455c26a56d7941f4b6bc7230 { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05411.RNA-Seq.R1_L007.T C3L-05411 LSCC RNA-Seq tumor CPT0293160009 200428_UNC31-K00269_0275_AHGCJVBBXY_TATCGCAC-CTTAGTGT_S25_L007_R1_001.fastq.gz 4245426142 FASTQ R1_L007 unaligned CPTAC3 07570cfe-95d4-4547-8a49-cd0f32374d58 0136716eb226361f36c4e77326e86b72 { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05411.RNA-Seq.R2_L005.A C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 200505_UNC32-K00270_0246_BHH5F5BBXY_GATTCTGC-GACGAGAG_S19_L005_R2_001.fastq.gz 4128482183 FASTQ R2_L005 unaligned CPTAC3 14c35597-59b5-44df-8544-f586ecdd6ec1 bfab8a1bd0869c59b0efcc61d514f9ca { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05411.RNA-Seq.R2_L007.T C3L-05411 LSCC RNA-Seq tumor CPT0293160009 200428_UNC31-K00269_0275_AHGCJVBBXY_TATCGCAC-CTTAGTGT_S25_L007_R2_001.fastq.gz 4377701426 FASTQ R2_L007 unaligned CPTAC3 78f30461-f5e1-4177-a3c4-4b4b1c55ad62 efdbb535018865096ae737c0a74c31a0 { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05411.RNA-Seq.transcriptome.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 78cd2c73-3328-4a0f-9b32-f62ec6363821.rna_seq.transcriptome.gdc_realn.bam 7716733523 BAM transcriptome harmonized CPTAC3 98cb5e28-4884-4d6d-8073-9fc45fd2b770 8413a7d86a14c26003631668a5487f25 { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05411.RNA-Seq.transcriptome.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 2e435c3b-aa0d-40f1-b52c-dbcc428cd60f.rna_seq.transcriptome.gdc_realn.bam 10363078769 BAM transcriptome harmonized CPTAC3 f9bfe130-8029-4663-a4ac-2babcf75bf40 708d223670d32ac196eb70426bbb2172 { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor' } +C3L-05411.RNA-Seq.chimeric.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 dad8a118-2173-4daa-bacc-8c30107c74c0.rna_seq.chimeric.gdc_realn.bam 28112789 BAM chimeric harmonized CPTAC3 fc05db91-2981-4261-a82b-dcdae17d04f8 5696b0a9f47ed992411bc6eee3090eed { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05411.RNA-Seq.chimeric.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 69be223f-589c-4b51-a019-b47cd0c8f31e.rna_seq.chimeric.gdc_realn.bam 62205983 BAM chimeric harmonized CPTAC3 f909364e-cd84-49c9-b3f7-759431bb50ee 2f55531ec573d12543898728f2cf2fdf { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor' } +C3L-05411.RNA-Seq.genomic.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 dad8a118-2173-4daa-bacc-8c30107c74c0.rna_seq.genomic.gdc_realn.bam 7532366014 BAM genomic harmonized CPTAC3 e00e07a7-6eeb-4d6f-a000-114d5cca6a42 e9c5eb43a11602c46efbfa6601af68bf { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05411.RNA-Seq.genomic.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 69be223f-589c-4b51-a019-b47cd0c8f31e.rna_seq.genomic.gdc_realn.bam 8305161119 BAM genomic harmonized CPTAC3 a3ef45b7-93da-4e12-8273-7e0922b1a0ea a96eb5b5ec346debcd0d09c7965ca9fb { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor' } +C3L-05411.RNA-Seq.R1_L005.A C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 200505_UNC32-K00270_0246_BHH5F5BBXY_GATTCTGC-GACGAGAG_S19_L005_R1_001.fastq.gz 3405054575 FASTQ R1_L005 unaligned CPTAC3 3342b740-1f04-480f-ae1d-17341e98ca9c e36ab2e1455c26a56d7941f4b6bc7230 { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-05411.RNA-Seq.R1_L007.T C3L-05411 LSCC RNA-Seq tumor CPT0293160009 200428_UNC31-K00269_0275_AHGCJVBBXY_TATCGCAC-CTTAGTGT_S25_L007_R1_001.fastq.gz 4245426142 FASTQ R1_L007 unaligned CPTAC3 07570cfe-95d4-4547-8a49-cd0f32374d58 0136716eb226361f36c4e77326e86b72 { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-05411.RNA-Seq.R2_L005.A C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 200505_UNC32-K00270_0246_BHH5F5BBXY_GATTCTGC-GACGAGAG_S19_L005_R2_001.fastq.gz 4128482183 FASTQ R2_L005 unaligned CPTAC3 14c35597-59b5-44df-8544-f586ecdd6ec1 bfab8a1bd0869c59b0efcc61d514f9ca { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-05411.RNA-Seq.R2_L007.T C3L-05411 LSCC RNA-Seq tumor CPT0293160009 200428_UNC31-K00269_0275_AHGCJVBBXY_TATCGCAC-CTTAGTGT_S25_L007_R2_001.fastq.gz 4377701426 FASTQ R2_L007 unaligned CPTAC3 78f30461-f5e1-4177-a3c4-4b4b1c55ad62 efdbb535018865096ae737c0a74c31a0 { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-05411.RNA-Seq.transcriptome.A.hg38 C3L-05411 LSCC RNA-Seq tissue_normal CPT0294290009 dad8a118-2173-4daa-bacc-8c30107c74c0.rna_seq.transcriptome.gdc_realn.bam 8746875187 BAM transcriptome harmonized CPTAC3 39efbcfe-b0ba-47b6-86af-97961f3f636b 969deebc02cdb11104840c0296935928 { 'aliquot_tag': 'ALQ_e43533ad', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05411.RNA-Seq.transcriptome.T.hg38 C3L-05411 LSCC RNA-Seq tumor CPT0293160009 69be223f-589c-4b51-a019-b47cd0c8f31e.rna_seq.transcriptome.gdc_realn.bam 11650183014 BAM transcriptome harmonized CPTAC3 671837da-56cf-452b-b9af-1ab6e79a07fc c62c910713efcb0e0001770755f03e35 { 'aliquot_tag': 'ALQ_2556e85c', 'gdc_sample_type': 'Primary Tumor' } C3L-05411.WGS.N C3L-05411 LSCC WGS blood_normal CPT0294390002 CPT0294390002.WholeGenome.RP-2158.bam 20306842382 BAM aligned CPTAC3 2fb8bd38-6383-4b84-a2fa-a50a00d2f3b7 eb6f4c8d561d3f0878e591d0462c8a79 { 'aliquot_tag': 'ALQ_b8bb3980', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05411.WGS.N.hg38 C3L-05411 LSCC WGS blood_normal CPT0294390002 1cf403f3-2850-4007-b4c2-996b29398e5f_wgs_gdc_realn.bam 59429608256 BAM harmonized CPTAC3 02318ce0-ed93-4b52-8861-f1bad1b7927f 827896e74e77e3166f6bbb6731f35a3a { 'aliquot_tag': 'ALQ_b8bb3980', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05411.WGS.T C3L-05411 LSCC WGS tumor CPT0293160006 CPT0293160006.WholeGenome.RP-2158.bam 22658753532 BAM aligned CPTAC3 f056e279-87b9-4570-b509-a22a26f90d15 23c801c10b4af93220eefa8d91e7b7cc { 'aliquot_tag': 'ALQ_b5e9f5cd', 'gdc_sample_type': 'Primary Tumor' } @@ -17431,16 +18507,16 @@ C3L-05417.miRNA-Seq.A C3L-05417 LSCC miRNA-Seq tissue_normal CPT0328490009 20051 C3L-05417.miRNA-Seq.A.hg38 C3L-05417 LSCC miRNA-Seq tissue_normal CPT0328490009 7b6568f2-d2f8-496b-8965-e50c61dabb8d_mirnaseq_gdc_realn.bam 188351234 BAM harmonized CPTAC3 a91ddb39-b62d-411e-9639-d583ddf2de07 338bd0d0461be34c8c65aa3181a12f7a { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05417.miRNA-Seq.T C3L-05417 LSCC miRNA-Seq tumor CPT0328450009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCATTC_S45_L006_R1_001.unaln.bam 186403407 BAM unaligned CPTAC3 6eb0206d-c576-4309-824e-7fc06b94e3b0 0905b3e29560749de4d6e43c1e71ef02 { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor' } C3L-05417.miRNA-Seq.T.hg38 C3L-05417 LSCC miRNA-Seq tumor CPT0328450009 f306f1de-ae6e-49b6-ae75-47f89122a04d_mirnaseq_gdc_realn.bam 205717521 BAM harmonized CPTAC3 377a346b-e261-4f32-9c3a-82953eecf03a a2e2f1e9fa6a465bccbf957fa87049b1 { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor' } -C3L-05417.RNA-Seq.chimeric.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 2e6aff62-4f4b-429e-8d06-326f8d405ab9.rna_seq.chimeric.gdc_realn.bam 26922698 BAM chimeric harmonized CPTAC3 79d5ecb3-5714-4e5f-bb7e-d1043882b891 3acc6e1fda418c91ad1575d7816f19c3 { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05417.RNA-Seq.chimeric.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 f1f28017-dede-47db-9fde-06ce84b44443.rna_seq.chimeric.gdc_realn.bam 32689643 BAM chimeric harmonized CPTAC3 5bb27147-ac29-498e-b2ff-86d3cd5af155 e930b4c1db9565d512e9bdcdaf40fd4c { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor' } -C3L-05417.RNA-Seq.genomic.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 2e6aff62-4f4b-429e-8d06-326f8d405ab9.rna_seq.genomic.gdc_realn.bam 7769297859 BAM genomic harmonized CPTAC3 40778fdd-e21e-4f52-aabd-4a18ca8b0fd8 61d1c8dba1c08235a592646a23393763 { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05417.RNA-Seq.genomic.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 f1f28017-dede-47db-9fde-06ce84b44443.rna_seq.genomic.gdc_realn.bam 9183095376 BAM genomic harmonized CPTAC3 6dc9064d-d717-48e3-b3fc-ba23fdfcc663 c17ba89c5839ef4c1ece476ebe8b5508 { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor' } -C3L-05417.RNA-Seq.R1_L003.A C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTCGGAGC-GGTTATAA_S11_L003_R1_001.fastq.gz 3275553191 FASTQ R1_L003 unaligned CPTAC3 47b8fcfb-4b58-4787-8d6f-f5b583d4de85 81b33c9737b53f749c2f6cfe5a16f9da { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05417.RNA-Seq.R1_L008.T C3L-05417 LSCC RNA-Seq tumor CPT0328450009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGGCATG-AAGGTACC_S30_L008_R1_001.fastq.gz 4088607192 FASTQ R1_L008 unaligned CPTAC3 5920b4ba-74d8-4ccb-8183-fc1c4fc07b8d 49599a5fd637b39fe60abd9e481ffd12 { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor' } -C3L-05417.RNA-Seq.R2_L003.A C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTCGGAGC-GGTTATAA_S11_L003_R2_001.fastq.gz 4086797292 FASTQ R2_L003 unaligned CPTAC3 987d6444-de01-4a5e-8fd7-b634ed325946 f21ee00a7268548edfc3cdb137377993 { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05417.RNA-Seq.R2_L008.T C3L-05417 LSCC RNA-Seq tumor CPT0328450009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGGCATG-AAGGTACC_S30_L008_R2_001.fastq.gz 5175218640 FASTQ R2_L008 unaligned CPTAC3 d727d5e2-2348-44a1-bfd4-6560fe45cf58 afb63e2944b2c5471c71ffe580f59ccc { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor' } -C3L-05417.RNA-Seq.transcriptome.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 2e6aff62-4f4b-429e-8d06-326f8d405ab9.rna_seq.transcriptome.gdc_realn.bam 6884079333 BAM transcriptome harmonized CPTAC3 4ad0b25e-ab32-4a6d-848b-663124cf1f6d a18008eaee8fa0249ab97f208ed0a9ed { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05417.RNA-Seq.transcriptome.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 f1f28017-dede-47db-9fde-06ce84b44443.rna_seq.transcriptome.gdc_realn.bam 10643313584 BAM transcriptome harmonized CPTAC3 81e06504-5e7e-4ebf-ae6d-4ded747d0c1c 374401f5fa7529edb3107272dc598010 { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor' } +C3L-05417.RNA-Seq.chimeric.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 d7387fe5-8dc9-4223-be7a-fc4a667f3f0b.rna_seq.chimeric.gdc_realn.bam 26916285 BAM chimeric harmonized CPTAC3 c81f3c1f-1351-41b0-a17f-a3c6ae097621 19c41ac4d1749edd49280953d80d7f8e { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05417.RNA-Seq.chimeric.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 79e64315-e4f4-48f9-9e84-0e6ff049ae8c.rna_seq.chimeric.gdc_realn.bam 32673412 BAM chimeric harmonized CPTAC3 1aac26a4-9710-4321-bc5e-ad04d8897799 ce96383de68964465e37530ec89cfea6 { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor' } +C3L-05417.RNA-Seq.genomic.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 d7387fe5-8dc9-4223-be7a-fc4a667f3f0b.rna_seq.genomic.gdc_realn.bam 7770820426 BAM genomic harmonized CPTAC3 1a4caf90-50c5-492c-8ffa-96a8559681c7 7ecd334f95fc736ac7afedcfa34a1e97 { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05417.RNA-Seq.genomic.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 79e64315-e4f4-48f9-9e84-0e6ff049ae8c.rna_seq.genomic.gdc_realn.bam 9184540201 BAM genomic harmonized CPTAC3 388af169-c07b-4593-bb00-96068262f5d8 22c5052c49123b8b70bb8e24e50c01fb { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor' } +C3L-05417.RNA-Seq.R1_L003.A C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTCGGAGC-GGTTATAA_S11_L003_R1_001.fastq.gz 3275553191 FASTQ R1_L003 unaligned CPTAC3 47b8fcfb-4b58-4787-8d6f-f5b583d4de85 81b33c9737b53f749c2f6cfe5a16f9da { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3L-05417.RNA-Seq.R1_L008.T C3L-05417 LSCC RNA-Seq tumor CPT0328450009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGGCATG-AAGGTACC_S30_L008_R1_001.fastq.gz 4088607192 FASTQ R1_L008 unaligned CPTAC3 5920b4ba-74d8-4ccb-8183-fc1c4fc07b8d 49599a5fd637b39fe60abd9e481ffd12 { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-05417.RNA-Seq.R2_L003.A C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 200505_UNC32-K00270_0246_BHH5F5BBXY_GTCGGAGC-GGTTATAA_S11_L003_R2_001.fastq.gz 4086797292 FASTQ R2_L003 unaligned CPTAC3 987d6444-de01-4a5e-8fd7-b634ed325946 f21ee00a7268548edfc3cdb137377993 { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3L-05417.RNA-Seq.R2_L008.T C3L-05417 LSCC RNA-Seq tumor CPT0328450009 200505_UNC32-K00270_0246_BHH5F5BBXY_ATGGCATG-AAGGTACC_S30_L008_R2_001.fastq.gz 5175218640 FASTQ R2_L008 unaligned CPTAC3 d727d5e2-2348-44a1-bfd4-6560fe45cf58 afb63e2944b2c5471c71ffe580f59ccc { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-05417.RNA-Seq.transcriptome.A.hg38 C3L-05417 LSCC RNA-Seq tissue_normal CPT0328490009 d7387fe5-8dc9-4223-be7a-fc4a667f3f0b.rna_seq.transcriptome.gdc_realn.bam 7712584190 BAM transcriptome harmonized CPTAC3 b00717e0-18e7-4228-9087-8f9f93fe297d bc0b6005c44e53ad62d5ea57b6b67b72 { 'aliquot_tag': 'ALQ_bfddb2d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05417.RNA-Seq.transcriptome.T.hg38 C3L-05417 LSCC RNA-Seq tumor CPT0328450009 79e64315-e4f4-48f9-9e84-0e6ff049ae8c.rna_seq.transcriptome.gdc_realn.bam 12004740375 BAM transcriptome harmonized CPTAC3 e8415e4e-d212-45af-8079-bde38076bc54 a601901b96a8184291398f5d05cc2af6 { 'aliquot_tag': 'ALQ_7a2d5fd0', 'gdc_sample_type': 'Primary Tumor' } C3L-05417.WGS.N C3L-05417 LSCC WGS blood_normal CPT0328590002 CPT0328590002.WholeGenome.RP-2158.bam 32329743122 BAM aligned CPTAC3 cd63e13c-c29e-4b71-b869-7c05f20cbb2d 78239c03adca13d8a851c68627ae914a { 'aliquot_tag': 'ALQ_e353b8fc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05417.WGS.N.hg38 C3L-05417 LSCC WGS blood_normal CPT0328590002 e23f6a2d-a1b0-4d06-8422-e974a789d4c9_wgs_gdc_realn.bam 98268443888 BAM harmonized CPTAC3 de2db24a-2b8b-46a0-80dd-d624854d697b ef2ed42197d185b504f1d971500d3e76 { 'aliquot_tag': 'ALQ_e353b8fc', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05417.WGS.T C3L-05417 LSCC WGS tumor CPT0328450006 CPT0328450006.WholeGenome.RP-2158.bam 25818367007 BAM aligned CPTAC3 98939581-465f-4811-ab8f-6dec3e8982b3 cb2508c1981f68dcf6868bd675c51a85 { 'aliquot_tag': 'ALQ_ea924241', 'gdc_sample_type': 'Primary Tumor' } @@ -17459,16 +18535,16 @@ C3L-05420.miRNA-Seq.A C3L-05420 LSCC miRNA-Seq tissue_normal CPT0292020009 20051 C3L-05420.miRNA-Seq.A.hg38 C3L-05420 LSCC miRNA-Seq tissue_normal CPT0292020009 d5ddd596-21a2-4470-a89b-acf47035a3f0_mirnaseq_gdc_realn.bam 263638212 BAM harmonized CPTAC3 6960c0ad-945a-4677-a37e-c2bd451b77aa 426a7761a723814fae359c1f11451f76 { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05420.miRNA-Seq.T C3L-05420 LSCC miRNA-Seq tumor CPT0291980009 200325_UNC31-K00269_0272_AHHC2NBBXY_CACCGG_S6_L001_R1_001.unaln.bam 249602173 BAM unaligned CPTAC3 82e6d604-6f17-4851-ad6b-4fe435fe9fb4 bce53c2790882897b3a1565591e649ba { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor' } C3L-05420.miRNA-Seq.T.hg38 C3L-05420 LSCC miRNA-Seq tumor CPT0291980009 e1a0938f-0147-487d-8114-7c9c92babfff_mirnaseq_gdc_realn.bam 269847098 BAM harmonized CPTAC3 d63ed244-083f-4167-b763-ad28d8253ba5 063b566daaa8e4ef11105ee13353b055 { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor' } -C3L-05420.RNA-Seq.chimeric.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 b8e5ed4d-407e-46de-a63c-4c7c32359c88.rna_seq.chimeric.gdc_realn.bam 34561025 BAM chimeric harmonized CPTAC3 2eb50cbb-dd3a-403f-8dc6-cb084dceb219 97f426e96206cbfc167106dc098c12cf { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05420.RNA-Seq.chimeric.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 480274f4-ed02-42bc-bff5-7ffb61339f04.rna_seq.chimeric.gdc_realn.bam 94268349 BAM chimeric harmonized CPTAC3 34b032b5-196f-43ae-a8e8-f9b5ded9528e 1c0f1dc3088f7a4171a9546e7769585c { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor' } -C3L-05420.RNA-Seq.genomic.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 b8e5ed4d-407e-46de-a63c-4c7c32359c88.rna_seq.genomic.gdc_realn.bam 8717372107 BAM genomic harmonized CPTAC3 ecb27f04-9943-4d52-951d-739648c544e7 0453e53605e8be1514e61970c4c5a5a6 { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05420.RNA-Seq.genomic.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 480274f4-ed02-42bc-bff5-7ffb61339f04.rna_seq.genomic.gdc_realn.bam 7519064583 BAM genomic harmonized CPTAC3 96173765-2611-4784-9116-d621d74b08b6 2da29f30306f7fecb0d6b2ad39a1dce8 { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor' } -C3L-05420.RNA-Seq.R1_L004.T C3L-05420 LSCC RNA-Seq tumor CPT0291980009 200428_UNC31-K00269_0275_AHGCJVBBXY_CATAGAGT-TGCCACCA_S14_L004_R1_001.fastq.gz 3695335244 FASTQ R1_L004 unaligned CPTAC3 c00ad80f-877c-4092-8150-37a3277af987 d41bd516abcdd563f98d591aa527fbfc { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor' } -C3L-05420.RNA-Seq.R1_L005.A C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGTTAGAA-TTCAGGTC_S18_L005_R1_001.fastq.gz 3846356115 FASTQ R1_L005 unaligned CPTAC3 0e305113-918e-44db-b305-707f5caf6fe2 739152f4ab0cff5ef45919070ef88499 { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05420.RNA-Seq.R2_L004.T C3L-05420 LSCC RNA-Seq tumor CPT0291980009 200428_UNC31-K00269_0275_AHGCJVBBXY_CATAGAGT-TGCCACCA_S14_L004_R2_001.fastq.gz 3904269143 FASTQ R2_L004 unaligned CPTAC3 c2735bdb-f91e-4e67-a535-fd0210870666 d224af1bd0515d5b821f954153f15fe9 { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor' } -C3L-05420.RNA-Seq.R2_L005.A C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGTTAGAA-TTCAGGTC_S18_L005_R2_001.fastq.gz 4873807125 FASTQ R2_L005 unaligned CPTAC3 0cd31933-c48b-4ad4-8fb4-002b4db21496 fe8027dbef56655d3fe79eee466b91e8 { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05420.RNA-Seq.transcriptome.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 b8e5ed4d-407e-46de-a63c-4c7c32359c88.rna_seq.transcriptome.gdc_realn.bam 8727366560 BAM transcriptome harmonized CPTAC3 4694b77a-9eb9-4a62-9c02-e305a46d1785 ca2ce4d135a056247273c1481e4b14e2 { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05420.RNA-Seq.transcriptome.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 480274f4-ed02-42bc-bff5-7ffb61339f04.rna_seq.transcriptome.gdc_realn.bam 9367767039 BAM transcriptome harmonized CPTAC3 3d925546-3c22-4fd8-971b-5be7aa6b25e8 77c9dbe2e1eb21d501267b438dc9a383 { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor' } +C3L-05420.RNA-Seq.chimeric.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 15fb6677-4a01-436a-a883-000465a8010c.rna_seq.chimeric.gdc_realn.bam 34527951 BAM chimeric harmonized CPTAC3 01f241be-9d01-43eb-b04a-2e421b3160ea fadc6622d72735b0be1595aa67ae911c { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05420.RNA-Seq.chimeric.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 56b5c305-a90a-40b9-b860-a2e011deb472.rna_seq.chimeric.gdc_realn.bam 94264941 BAM chimeric harmonized CPTAC3 8db13e22-c6ee-4773-a56f-bc022f861a91 d430b5987a3acd178d25502ea441455a { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor' } +C3L-05420.RNA-Seq.genomic.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 15fb6677-4a01-436a-a883-000465a8010c.rna_seq.genomic.gdc_realn.bam 8718897441 BAM genomic harmonized CPTAC3 fc526e5e-9cb7-45ce-8a6c-a355a64cce51 a4ff123d3df6c9757bad626b1db48ac7 { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05420.RNA-Seq.genomic.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 56b5c305-a90a-40b9-b860-a2e011deb472.rna_seq.genomic.gdc_realn.bam 7520723183 BAM genomic harmonized CPTAC3 bb1ef32b-4211-4a38-a50c-c0b970a3b751 cf9b6ac2f5660d3e722808c51f88b709 { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor' } +C3L-05420.RNA-Seq.R1_L004.T C3L-05420 LSCC RNA-Seq tumor CPT0291980009 200428_UNC31-K00269_0275_AHGCJVBBXY_CATAGAGT-TGCCACCA_S14_L004_R1_001.fastq.gz 3695335244 FASTQ R1_L004 unaligned CPTAC3 c00ad80f-877c-4092-8150-37a3277af987 d41bd516abcdd563f98d591aa527fbfc { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-05420.RNA-Seq.R1_L005.A C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGTTAGAA-TTCAGGTC_S18_L005_R1_001.fastq.gz 3846356115 FASTQ R1_L005 unaligned CPTAC3 0e305113-918e-44db-b305-707f5caf6fe2 739152f4ab0cff5ef45919070ef88499 { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3L-05420.RNA-Seq.R2_L004.T C3L-05420 LSCC RNA-Seq tumor CPT0291980009 200428_UNC31-K00269_0275_AHGCJVBBXY_CATAGAGT-TGCCACCA_S14_L004_R2_001.fastq.gz 3904269143 FASTQ R2_L004 unaligned CPTAC3 c2735bdb-f91e-4e67-a535-fd0210870666 d224af1bd0515d5b821f954153f15fe9 { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-05420.RNA-Seq.R2_L005.A C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 200505_UNC32-K00270_0246_BHH5F5BBXY_CGTTAGAA-TTCAGGTC_S18_L005_R2_001.fastq.gz 4873807125 FASTQ R2_L005 unaligned CPTAC3 0cd31933-c48b-4ad4-8fb4-002b4db21496 fe8027dbef56655d3fe79eee466b91e8 { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3L-05420.RNA-Seq.transcriptome.A.hg38 C3L-05420 LSCC RNA-Seq tissue_normal CPT0292020009 15fb6677-4a01-436a-a883-000465a8010c.rna_seq.transcriptome.gdc_realn.bam 9925963783 BAM transcriptome harmonized CPTAC3 924ed0c6-0429-418c-b6c1-4906a67b006d 6fbb88ed5bdbbe02864a3defe2b26bc2 { 'aliquot_tag': 'ALQ_bdfd968d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05420.RNA-Seq.transcriptome.T.hg38 C3L-05420 LSCC RNA-Seq tumor CPT0291980009 56b5c305-a90a-40b9-b860-a2e011deb472.rna_seq.transcriptome.gdc_realn.bam 10554491384 BAM transcriptome harmonized CPTAC3 cf6d81d9-0858-463a-bd81-5bf55a7ad1bc 08f22054477099c564686b21b721d8d7 { 'aliquot_tag': 'ALQ_e1aac579', 'gdc_sample_type': 'Primary Tumor' } C3L-05420.WGS.N C3L-05420 LSCC WGS blood_normal CPT0292120002 CPT0292120002.WholeGenome.RP-2158.bam 29184075501 BAM aligned CPTAC3 eeb6c62f-88d6-46e7-8a7d-7c5627fca1cf 133aef7885e3856c549b9e537cc0a470 { 'aliquot_tag': 'ALQ_e1739ca0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05420.WGS.N.hg38 C3L-05420 LSCC WGS blood_normal CPT0292120002 1a3a6a41-a4d3-4b76-9184-5cede7fcb0bf_wgs_gdc_realn.bam 86668734517 BAM harmonized CPTAC3 eb81c000-0d62-401f-83f3-6bebe143f74f 542cf7f9c563507659f03e4ac5202f7b { 'aliquot_tag': 'ALQ_e1739ca0', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05420.WGS.T C3L-05420 LSCC WGS tumor CPT0291980006 CPT0291980006.WholeGenome.RP-2158.bam 23944172250 BAM aligned CPTAC3 cf84cdb6-12cf-4d2c-8cc5-7cf576db0d9f 6edee1b626c463cfd9d8806db8d75eb5 { 'aliquot_tag': 'ALQ_7115d8e8', 'gdc_sample_type': 'Primary Tumor' } @@ -17488,16 +18564,16 @@ C3L-05422.miRNA-Seq.A.hg38 C3L-05422 LSCC miRNA-Seq tissue_normal CPT0282760009 C3L-05422.miRNA-Seq.T C3L-05422 LSCC miRNA-Seq tumor CPT0282750009 200224_UNC31-K00269_0267_AHC722BBXY_GTCCGC_S18_L006_R1_001.unaln.bam 146024716 BAM unaligned CPTAC3 7db14e54-f5e1-44a9-8c6c-2fa854e77f6c 8777248151df24581a40d8cd16ceeeea { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } C3L-05422.miRNA-Seq.T C3L-05422 LSCC miRNA-Seq tumor CPT0282750009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L001_R1_001.unaln.bam 138996698 BAM unaligned CPTAC3 577aecd2-8b8d-471a-b9be-7f6f1045506a 1db07931a12aff824ff922f073970332 { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } C3L-05422.miRNA-Seq.T.hg38 C3L-05422 LSCC miRNA-Seq tumor CPT0282750009 2e55dd0b-0d75-4982-bec5-9fea5940f075_mirnaseq_gdc_realn.bam 309080854 BAM harmonized CPTAC3 b74b1301-fb88-4903-8751-736481f9af02 b109c826ad9da2266f5b16b76fc418ab { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } -C3L-05422.RNA-Seq.chimeric.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 047371f9-52ea-46ba-8aad-2361612e4c09.rna_seq.chimeric.gdc_realn.bam 34363324 BAM chimeric harmonized CPTAC3 8cda5ff3-4eec-46e6-9702-c0259b84eefc 8dc079174c272ca6edbef5158880703b { 'aliquot_tag': 'ALQ_99d2006b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05422.RNA-Seq.chimeric.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 6c037de4-ec87-422e-abb4-a558cf68d5fe.rna_seq.chimeric.gdc_realn.bam 91507032 BAM chimeric harmonized CPTAC3 7f6d44fe-45f4-4e9e-a98a-2ea9b572f341 b5f9db7696e774b6ed9ca9809f0ca330 { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } -C3L-05422.RNA-Seq.genomic.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 047371f9-52ea-46ba-8aad-2361612e4c09.rna_seq.genomic.gdc_realn.bam 8242884757 BAM genomic harmonized CPTAC3 940a1d5f-4675-4428-9660-0b3da16d9363 6f3a3ef7a4b225ae1b6b6eb6be1a6d00 { 'aliquot_tag': 'ALQ_99d2006b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05422.RNA-Seq.genomic.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 6c037de4-ec87-422e-abb4-a558cf68d5fe.rna_seq.genomic.gdc_realn.bam 7532000547 BAM genomic harmonized CPTAC3 10469d6f-837e-400a-b9ec-bce52329f0e9 226444d3b2e3009503752d4228b27d0f { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } -C3L-05422.RNA-Seq.R1_L001.T C3L-05422 LSCC RNA-Seq tumor CPT0282750009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGTCGGA-GCTTGCGC_S2_L001_R1_001.fastq.gz 3540967192 FASTQ R1_L001 unaligned CPTAC3 98deb929-394e-4521-a710-17a9ced8c563 200e6b63ae5e6305d92b12179b49d52d { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } -C3L-05422.RNA-Seq.R1_L007.A C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L007_R1_001.fastq.gz 4180932305 FASTQ R1_L007 unaligned CPTAC3 edf97ae2-81b1-4e6f-9cde-b240d6c53e2d a5adfbcd9c8b724ad9faf8a8720cbeff { 'aliquot_tag': 'ALQ_99d2006b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05422.RNA-Seq.R2_L001.T C3L-05422 LSCC RNA-Seq tumor CPT0282750009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGTCGGA-GCTTGCGC_S2_L001_R2_001.fastq.gz 3953983587 FASTQ R2_L001 unaligned CPTAC3 bdb1fa42-9e3e-4d2c-81ff-6bc23edfff98 e6a04f53ecd09463f7c5433ad5ccfaa7 { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } -C3L-05422.RNA-Seq.R2_L007.A C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L007_R2_001.fastq.gz 4412938656 FASTQ R2_L007 unaligned CPTAC3 d9ee245f-9d2e-4b9b-a400-6b63d59023e2 9c01eb15a282ce766d226b9a7ac1d0f0 { 'aliquot_tag': 'ALQ_99d2006b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05422.RNA-Seq.transcriptome.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 047371f9-52ea-46ba-8aad-2361612e4c09.rna_seq.transcriptome.gdc_realn.bam 9817029829 BAM transcriptome harmonized CPTAC3 e2ae6cfe-106c-4068-9bc1-1029a0a93b23 873713b5effd454ac8cc2a2dbb3510a6 { 'aliquot_tag': 'ALQ_99d2006b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05422.RNA-Seq.transcriptome.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 6c037de4-ec87-422e-abb4-a558cf68d5fe.rna_seq.transcriptome.gdc_realn.bam 8284361934 BAM transcriptome harmonized CPTAC3 abcff892-6c80-439b-b983-327e7029f6de 1855485fff17d0c2dbc4636051f25188 { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } +C3L-05422.RNA-Seq.chimeric.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 bcc4b91b-7baf-478c-9648-3ec0fd01c0d1.rna_seq.chimeric.gdc_realn.bam 34345752 BAM chimeric harmonized CPTAC3 b7966d03-ff56-4638-a34f-9cffcda2d9ee 28d6b2490d67ed984d7772e9ea95d79f { 'aliquot_tag': 'ALQ_99d2006b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05422.RNA-Seq.chimeric.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 88d0e365-8925-4e03-94a2-c9d634413348.rna_seq.chimeric.gdc_realn.bam 91501094 BAM chimeric harmonized CPTAC3 638dfcb0-9e5a-4300-9af7-4c3b607aaf8b 08550dec0e9677fcb2a6c890b8a8e2dc { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } +C3L-05422.RNA-Seq.genomic.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 bcc4b91b-7baf-478c-9648-3ec0fd01c0d1.rna_seq.genomic.gdc_realn.bam 8243733724 BAM genomic harmonized CPTAC3 3118106e-33bc-45ad-8e8c-1d5f5260b645 56e1eb067d9ed608a63d71f91f890dd3 { 'aliquot_tag': 'ALQ_99d2006b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05422.RNA-Seq.genomic.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 88d0e365-8925-4e03-94a2-c9d634413348.rna_seq.genomic.gdc_realn.bam 7533288510 BAM genomic harmonized CPTAC3 1a5af40f-8ae5-42e5-8eae-85bcff8dffda 38a4383553dd7553f13a45ec06b6e9c1 { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } +C3L-05422.RNA-Seq.R1_L001.T C3L-05422 LSCC RNA-Seq tumor CPT0282750009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGTCGGA-GCTTGCGC_S2_L001_R1_001.fastq.gz 3540967192 FASTQ R1_L001 unaligned CPTAC3 98deb929-394e-4521-a710-17a9ced8c563 200e6b63ae5e6305d92b12179b49d52d { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-05422.RNA-Seq.R1_L007.A C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L007_R1_001.fastq.gz 4180932305 FASTQ R1_L007 unaligned CPTAC3 edf97ae2-81b1-4e6f-9cde-b240d6c53e2d a5adfbcd9c8b724ad9faf8a8720cbeff { 'aliquot_tag': 'ALQ_99d2006b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-05422.RNA-Seq.R2_L001.T C3L-05422 LSCC RNA-Seq tumor CPT0282750009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGTCGGA-GCTTGCGC_S2_L001_R2_001.fastq.gz 3953983587 FASTQ R2_L001 unaligned CPTAC3 bdb1fa42-9e3e-4d2c-81ff-6bc23edfff98 e6a04f53ecd09463f7c5433ad5ccfaa7 { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-05422.RNA-Seq.R2_L007.A C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 200505_UNC32-K00270_0245_AHH5FVBBXY_GACCTGAA-TTGGTGAG_S10_L007_R2_001.fastq.gz 4412938656 FASTQ R2_L007 unaligned CPTAC3 d9ee245f-9d2e-4b9b-a400-6b63d59023e2 9c01eb15a282ce766d226b9a7ac1d0f0 { 'aliquot_tag': 'ALQ_99d2006b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-05422.RNA-Seq.transcriptome.A.hg38 C3L-05422 LSCC RNA-Seq tissue_normal CPT0282760009 bcc4b91b-7baf-478c-9648-3ec0fd01c0d1.rna_seq.transcriptome.gdc_realn.bam 11108775006 BAM transcriptome harmonized CPTAC3 6a999b3a-4747-4291-866a-502b916f16eb 6b447e370993d0fce6118fe2aed029f2 { 'aliquot_tag': 'ALQ_99d2006b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05422.RNA-Seq.transcriptome.T.hg38 C3L-05422 LSCC RNA-Seq tumor CPT0282750009 88d0e365-8925-4e03-94a2-c9d634413348.rna_seq.transcriptome.gdc_realn.bam 9388775502 BAM transcriptome harmonized CPTAC3 2cba8198-3ece-4df9-a5ae-dcec9f8ff27d 476ad4b4163aa067288cb1cc90ac2c75 { 'aliquot_tag': 'ALQ_de727abb', 'gdc_sample_type': 'Primary Tumor' } C3L-05422.WGS.N C3L-05422 LSCC WGS blood_normal CPT0282870002 CPT0282870002.WholeGenome.RP-2158.bam 20527970747 BAM aligned CPTAC3 53c13f63-138e-40ab-9e08-b81eeceebc01 1a58a6c570761dd6b22df8494f069ca7 { 'aliquot_tag': 'ALQ_c2364286', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05422.WGS.N.hg38 C3L-05422 LSCC WGS blood_normal CPT0282870002 58dbf06a-1bc2-493f-905b-956771ec2bc8_wgs_gdc_realn.bam 60388857773 BAM harmonized CPTAC3 493be082-54f7-41a0-b48b-8282e4c88bcd 1e775aba3d149b7c145ee7fc26c2be92 { 'aliquot_tag': 'ALQ_c2364286', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05422.WGS.T C3L-05422 LSCC WGS tumor CPT0282750006 CPT0282750006.WholeGenome.RP-2158.bam 21849410222 BAM aligned CPTAC3 19aee1e9-f55a-4d5e-9714-a6785cc901d1 131523ea97ef6f558f134d9e428bf8f9 { 'aliquot_tag': 'ALQ_4ecd672a', 'gdc_sample_type': 'Primary Tumor' } @@ -17516,16 +18592,16 @@ C3L-05423.miRNA-Seq.A C3L-05423 LSCC miRNA-Seq tissue_normal CPT0282940009 20051 C3L-05423.miRNA-Seq.A.hg38 C3L-05423 LSCC miRNA-Seq tissue_normal CPT0282940009 67ecec66-0c7f-4502-a7aa-e741905e25ee_mirnaseq_gdc_realn.bam 243275197 BAM harmonized CPTAC3 18cba86f-8020-4991-80b1-b17dfa90fe53 08f8a85307775e840b164695859a2aa1 { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05423.miRNA-Seq.T C3L-05423 LSCC miRNA-Seq tumor CPT0282910009 200224_UNC31-K00269_0267_AHC722BBXY_GTGAAA_S19_L006_R1_001.unaln.bam 262297533 BAM unaligned CPTAC3 1cc09d1a-848e-4eae-a5e1-65ec251dc813 0f4f5946a00e9c770266c5414b0ea3ed { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor' } C3L-05423.miRNA-Seq.T.hg38 C3L-05423 LSCC miRNA-Seq tumor CPT0282910009 24658a12-f698-4ee6-8f5c-234bf16a0d14_mirnaseq_gdc_realn.bam 282307073 BAM harmonized CPTAC3 6daf2460-533e-4da3-9fed-1d6954b3c4cc e5d11fe5c2d8a55cf1561d78e9166a21 { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-05423.RNA-Seq.chimeric.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 c6051895-12f9-43d7-b686-416b8cefaaf4.rna_seq.chimeric.gdc_realn.bam 33821286 BAM chimeric harmonized CPTAC3 7507e9eb-2fb8-4857-9bca-ff3c8f449bce 1c3728804f374c2bbdf792989c982d3b { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05423.RNA-Seq.chimeric.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 5619a2aa-b1a6-4559-b908-781bdc5929b8.rna_seq.chimeric.gdc_realn.bam 84005675 BAM chimeric harmonized CPTAC3 f5c32e28-d717-4950-84da-4d8567fea1a3 53ca737e958d2f15c8b704fdb2847cc2 { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-05423.RNA-Seq.genomic.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 c6051895-12f9-43d7-b686-416b8cefaaf4.rna_seq.genomic.gdc_realn.bam 8705645507 BAM genomic harmonized CPTAC3 f0e5e445-a95f-471f-a2e2-5d603d52c821 8a9b7601faccec16cafe723b4e3e549d { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05423.RNA-Seq.genomic.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 5619a2aa-b1a6-4559-b908-781bdc5929b8.rna_seq.genomic.gdc_realn.bam 9206634288 BAM genomic harmonized CPTAC3 231dde9d-59e5-446b-bf38-b4911b4ab36a 282c06fef7dac483e0039dcca32b40f9 { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-05423.RNA-Seq.R1_L001.T C3L-05423 LSCC RNA-Seq tumor CPT0282910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TTCCTGTT-AGTATCTT_S3_L001_R1_001.fastq.gz 4489332453 FASTQ R1_L001 unaligned CPTAC3 d0ac19b2-1a83-4bb5-970f-85d1c79c2624 d20247e8fe1b44f2977f38645238d67d { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-05423.RNA-Seq.R1_L007.A C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L007_R1_001.fastq.gz 4415304198 FASTQ R1_L007 unaligned CPTAC3 3b34808d-b27f-4482-a1ff-4d2e87b188b6 772f62b80e958d1798f37bf285b20d70 { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05423.RNA-Seq.R2_L001.T C3L-05423 LSCC RNA-Seq tumor CPT0282910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TTCCTGTT-AGTATCTT_S3_L001_R2_001.fastq.gz 4942844948 FASTQ R2_L001 unaligned CPTAC3 c18b79e3-24ae-4e53-974e-2878757e4e00 16addfd396e311a877bb41b5ceb3ca75 { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor' } -C3L-05423.RNA-Seq.R2_L007.A C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L007_R2_001.fastq.gz 4774818539 FASTQ R2_L007 unaligned CPTAC3 81c7c5ab-c5e6-4df6-ae8e-fbefa9d7d1a0 afc7ea02ebf843b5bdea909cd6a89141 { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05423.RNA-Seq.transcriptome.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 c6051895-12f9-43d7-b686-416b8cefaaf4.rna_seq.transcriptome.gdc_realn.bam 9811228896 BAM transcriptome harmonized CPTAC3 686fc7fa-b73f-4378-837b-ecb71710a017 65466ac5dd2d872379ed06511ba9bc33 { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05423.RNA-Seq.transcriptome.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 5619a2aa-b1a6-4559-b908-781bdc5929b8.rna_seq.transcriptome.gdc_realn.bam 9993075798 BAM transcriptome harmonized CPTAC3 cdbed262-7a1c-4f58-a17b-124ae40cddd6 9935030f39f6ec0025d75d3affd34c57 { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor' } +C3L-05423.RNA-Seq.chimeric.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 f7a25ec1-9fa0-491f-aa07-7c9f655b22b3.rna_seq.chimeric.gdc_realn.bam 33811817 BAM chimeric harmonized CPTAC3 2c12b01d-1a8c-4c0a-9397-d04d2e740630 e6a64fdf07e2cc5b11c1ac27a2b07ca4 { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05423.RNA-Seq.chimeric.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 f8bff034-b478-4211-8222-359b2d203f4e.rna_seq.chimeric.gdc_realn.bam 83999933 BAM chimeric harmonized CPTAC3 1924c79c-d271-4e64-9655-5f78b0e51390 7a24d53be35e0784a3593a4d5dcbd28e { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor' } +C3L-05423.RNA-Seq.genomic.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 f7a25ec1-9fa0-491f-aa07-7c9f655b22b3.rna_seq.genomic.gdc_realn.bam 8707607151 BAM genomic harmonized CPTAC3 9692e760-fe77-454e-a1f6-1c5b84d756ed 84b46a1c7cf066174426ed5724c401c4 { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05423.RNA-Seq.genomic.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 f8bff034-b478-4211-8222-359b2d203f4e.rna_seq.genomic.gdc_realn.bam 9209438633 BAM genomic harmonized CPTAC3 5317b2df-411a-4c3d-95a9-34b570334044 c4193d5a75b9582248c3e1b2348b9747 { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor' } +C3L-05423.RNA-Seq.R1_L001.T C3L-05423 LSCC RNA-Seq tumor CPT0282910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TTCCTGTT-AGTATCTT_S3_L001_R1_001.fastq.gz 4489332453 FASTQ R1_L001 unaligned CPTAC3 d0ac19b2-1a83-4bb5-970f-85d1c79c2624 d20247e8fe1b44f2977f38645238d67d { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-05423.RNA-Seq.R1_L007.A C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L007_R1_001.fastq.gz 4415304198 FASTQ R1_L007 unaligned CPTAC3 3b34808d-b27f-4482-a1ff-4d2e87b188b6 772f62b80e958d1798f37bf285b20d70 { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-05423.RNA-Seq.R2_L001.T C3L-05423 LSCC RNA-Seq tumor CPT0282910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TTCCTGTT-AGTATCTT_S3_L001_R2_001.fastq.gz 4942844948 FASTQ R2_L001 unaligned CPTAC3 c18b79e3-24ae-4e53-974e-2878757e4e00 16addfd396e311a877bb41b5ceb3ca75 { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-05423.RNA-Seq.R2_L007.A C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L007_R2_001.fastq.gz 4774818539 FASTQ R2_L007 unaligned CPTAC3 81c7c5ab-c5e6-4df6-ae8e-fbefa9d7d1a0 afc7ea02ebf843b5bdea909cd6a89141 { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-05423.RNA-Seq.transcriptome.A.hg38 C3L-05423 LSCC RNA-Seq tissue_normal CPT0282940009 f7a25ec1-9fa0-491f-aa07-7c9f655b22b3.rna_seq.transcriptome.gdc_realn.bam 11141721613 BAM transcriptome harmonized CPTAC3 1d1380d4-f4f7-4454-8cdf-36794521909c 495282c8217cdd346e0526a6d01f9df3 { 'aliquot_tag': 'ALQ_d918327b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05423.RNA-Seq.transcriptome.T.hg38 C3L-05423 LSCC RNA-Seq tumor CPT0282910009 f8bff034-b478-4211-8222-359b2d203f4e.rna_seq.transcriptome.gdc_realn.bam 11242863909 BAM transcriptome harmonized CPTAC3 31faa0cd-b25b-45b0-a432-e3846da4f56e 00c62cb140a366aac21a458700de21f1 { 'aliquot_tag': 'ALQ_11f8bd0b', 'gdc_sample_type': 'Primary Tumor' } C3L-05423.WGS.N C3L-05423 LSCC WGS blood_normal CPT0283050002 CPT0283050002.WholeGenome.RP-2158.bam 22150583479 BAM aligned CPTAC3 8eacf8d6-cb46-4406-b9d5-b5e1cb181811 17e947c7ccaa811c7ad179ce6ba13f7d { 'aliquot_tag': 'ALQ_f2d2983f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05423.WGS.N.hg38 C3L-05423 LSCC WGS blood_normal CPT0283050002 473dfbc7-4094-4cb5-9f0e-152bdcc320d3_wgs_gdc_realn.bam 66453981376 BAM harmonized CPTAC3 2168c0d3-9223-43d5-8288-7580f45353be c0705eee3f92fa5d8689335ba767872e { 'aliquot_tag': 'ALQ_f2d2983f', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05423.WGS.T C3L-05423 LSCC WGS tumor CPT0282910006 CPT0282910006.WholeGenome.RP-2158.bam 24643260116 BAM aligned CPTAC3 897e4ec6-9dc6-40eb-90cb-369c300baa76 cf399450618b3cc855f2f47ce117a9eb { 'aliquot_tag': 'ALQ_8147a09a', 'gdc_sample_type': 'Primary Tumor' } @@ -17544,16 +18620,16 @@ C3L-05427.miRNA-Seq.A C3L-05427 LSCC miRNA-Seq tissue_normal CPT0284190009 20051 C3L-05427.miRNA-Seq.A.hg38 C3L-05427 LSCC miRNA-Seq tissue_normal CPT0284190009 0269e8d7-0019-49cd-944f-e1bf88b5db0d_mirnaseq_gdc_realn.bam 269402093 BAM harmonized CPTAC3 1c7b9c8a-c17d-4ba2-98a1-7d89a52159bd cb9144598f1086a9063b2a579af6314e { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05427.miRNA-Seq.T C3L-05427 LSCC miRNA-Seq tumor CPT0284130009 200224_UNC31-K00269_0267_AHC722BBXY_GTGGCC_S20_L006_R1_001.unaln.bam 249618803 BAM unaligned CPTAC3 a3bd39fa-7b10-4d61-a08f-d2417de4a5a5 6d02efd3363b303b1904456f866e26ee { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor' } C3L-05427.miRNA-Seq.T.hg38 C3L-05427 LSCC miRNA-Seq tumor CPT0284130009 b8e972d6-c1a1-4e51-817e-3a7e59f61408_mirnaseq_gdc_realn.bam 272874656 BAM harmonized CPTAC3 d5fff9ef-452e-4c33-bc55-8e5862981b11 ad3c9d6597dcd9a518d8e11c104619ff { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05427.RNA-Seq.chimeric.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 da51e6bd-1e3b-45f4-92dc-80acddb0adf0.rna_seq.chimeric.gdc_realn.bam 32491170 BAM chimeric harmonized CPTAC3 42bff0ff-7771-43f4-82f9-2176c145575d c76f6f611488b74727275bcb2d1015eb { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05427.RNA-Seq.chimeric.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 173279f1-1b49-4dc1-a343-9af7a83f11c3.rna_seq.chimeric.gdc_realn.bam 41975947 BAM chimeric harmonized CPTAC3 a55ae984-7122-4a43-ba1d-ea9955e72f74 ec5541d97ef7bda4f97b05c03e069ec2 { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05427.RNA-Seq.genomic.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 da51e6bd-1e3b-45f4-92dc-80acddb0adf0.rna_seq.genomic.gdc_realn.bam 8077971846 BAM genomic harmonized CPTAC3 ab8d1fd9-29c1-44db-9485-4de9dc944f9d 9089bef357a382cbd9be3b03a2fc61dc { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05427.RNA-Seq.genomic.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 173279f1-1b49-4dc1-a343-9af7a83f11c3.rna_seq.genomic.gdc_realn.bam 6877837947 BAM genomic harmonized CPTAC3 c10352c4-c532-427c-b8dc-ebadb75b4af5 ae3a94cc8b4cf3a38ce0a6110c5f9e9a { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05427.RNA-Seq.R1_L001.T C3L-05427 LSCC RNA-Seq tumor CPT0284130009 200428_UNC31-K00269_0275_AHGCJVBBXY_CCTTCACC-GACGCTCC_S4_L001_R1_001.fastq.gz 3152343958 FASTQ R1_L001 unaligned CPTAC3 1e71dff6-a4f6-4b2f-997b-97333d743138 13b58788ddeaebf60f6560ff1d214f3b { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05427.RNA-Seq.R1_L007.A C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L007_R1_001.fastq.gz 3970850364 FASTQ R1_L007 unaligned CPTAC3 482b9386-177c-4b58-911b-71dcf0bc091e d5bcb11c75e7805eab47f8b377709f6b { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05427.RNA-Seq.R2_L001.T C3L-05427 LSCC RNA-Seq tumor CPT0284130009 200428_UNC31-K00269_0275_AHGCJVBBXY_CCTTCACC-GACGCTCC_S4_L001_R2_001.fastq.gz 3502760688 FASTQ R2_L001 unaligned CPTAC3 0985bf86-4c08-4c25-b649-faf95cb52e85 c0652aec66606cc7e4f0f11ef16be5b7 { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05427.RNA-Seq.R2_L007.A C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L007_R2_001.fastq.gz 4257470120 FASTQ R2_L007 unaligned CPTAC3 05e7e5ac-bda1-4b39-9be2-13a7ed728760 35f96b78b2854625d31f132962e503f9 { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05427.RNA-Seq.transcriptome.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 da51e6bd-1e3b-45f4-92dc-80acddb0adf0.rna_seq.transcriptome.gdc_realn.bam 7959235684 BAM transcriptome harmonized CPTAC3 d3e07c26-f85b-4aa4-b717-ec4560165389 d4bec8ec529b1d98319d6e6f6b082887 { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05427.RNA-Seq.transcriptome.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 173279f1-1b49-4dc1-a343-9af7a83f11c3.rna_seq.transcriptome.gdc_realn.bam 7710748353 BAM transcriptome harmonized CPTAC3 f99ca95b-b489-4e6d-aed8-0cdf5c29954d dcc2db08a162870b3de7a32d04d6fc4f { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor' } +C3L-05427.RNA-Seq.chimeric.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 9f4376d8-f55d-4763-9ac1-5ea7fe51507f.rna_seq.chimeric.gdc_realn.bam 32473147 BAM chimeric harmonized CPTAC3 c272b879-482f-4358-979e-9e6cb1fdcc19 cdba34b3e1ff339432026437c49d9365 { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05427.RNA-Seq.chimeric.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 3c435160-0e20-4157-9095-296e51f58877.rna_seq.chimeric.gdc_realn.bam 41992246 BAM chimeric harmonized CPTAC3 0296d1a5-0eb8-4a7f-a0c7-bfb5e6cef506 4b0f43d2e7e53d20976daf250f3cb3b1 { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor' } +C3L-05427.RNA-Seq.genomic.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 9f4376d8-f55d-4763-9ac1-5ea7fe51507f.rna_seq.genomic.gdc_realn.bam 8078941065 BAM genomic harmonized CPTAC3 53f2a33e-c003-42fa-a61e-632e2e532e88 619c7e3f6e09e815adbee89245a72633 { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05427.RNA-Seq.genomic.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 3c435160-0e20-4157-9095-296e51f58877.rna_seq.genomic.gdc_realn.bam 6879443317 BAM genomic harmonized CPTAC3 d1780a60-cc51-46a4-ba05-7fc5dc40e3a2 e321d257e9123a1475e21e57eea73580 { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor' } +C3L-05427.RNA-Seq.R1_L001.T C3L-05427 LSCC RNA-Seq tumor CPT0284130009 200428_UNC31-K00269_0275_AHGCJVBBXY_CCTTCACC-GACGCTCC_S4_L001_R1_001.fastq.gz 3152343958 FASTQ R1_L001 unaligned CPTAC3 1e71dff6-a4f6-4b2f-997b-97333d743138 13b58788ddeaebf60f6560ff1d214f3b { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-05427.RNA-Seq.R1_L007.A C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L007_R1_001.fastq.gz 3970850364 FASTQ R1_L007 unaligned CPTAC3 482b9386-177c-4b58-911b-71dcf0bc091e d5bcb11c75e7805eab47f8b377709f6b { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3L-05427.RNA-Seq.R2_L001.T C3L-05427 LSCC RNA-Seq tumor CPT0284130009 200428_UNC31-K00269_0275_AHGCJVBBXY_CCTTCACC-GACGCTCC_S4_L001_R2_001.fastq.gz 3502760688 FASTQ R2_L001 unaligned CPTAC3 0985bf86-4c08-4c25-b649-faf95cb52e85 c0652aec66606cc7e4f0f11ef16be5b7 { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-05427.RNA-Seq.R2_L007.A C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L007_R2_001.fastq.gz 4257470120 FASTQ R2_L007 unaligned CPTAC3 05e7e5ac-bda1-4b39-9be2-13a7ed728760 35f96b78b2854625d31f132962e503f9 { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3L-05427.RNA-Seq.transcriptome.A.hg38 C3L-05427 LSCC RNA-Seq tissue_normal CPT0284190009 9f4376d8-f55d-4763-9ac1-5ea7fe51507f.rna_seq.transcriptome.gdc_realn.bam 9040150093 BAM transcriptome harmonized CPTAC3 d154d069-8347-4e30-b69f-e5a7c47eda5b 3b4567afc2340afe7ba92a43e5dc9d8f { 'aliquot_tag': 'ALQ_ae0b419d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05427.RNA-Seq.transcriptome.T.hg38 C3L-05427 LSCC RNA-Seq tumor CPT0284130009 3c435160-0e20-4157-9095-296e51f58877.rna_seq.transcriptome.gdc_realn.bam 8537298565 BAM transcriptome harmonized CPTAC3 9e4e0a2c-e1fc-4e7c-b15f-381225f47e83 8c895a534f08ff3e2df649ebaf2da29a { 'aliquot_tag': 'ALQ_e4bb593c', 'gdc_sample_type': 'Primary Tumor' } C3L-05427.WGS.N C3L-05427 LSCC WGS blood_normal CPT0284290002 CPT0284290002.WholeGenome.RP-2158.bam 32294248540 BAM aligned CPTAC3 74d939ff-9663-4484-ab5d-b95e8af97548 c3847962e4f1417c6a4a014708c54bdb { 'aliquot_tag': 'ALQ_bf4deabb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05427.WGS.N.hg38 C3L-05427 LSCC WGS blood_normal CPT0284290002 e5dcd75a-3cd2-41b2-8297-a1fce506b09a_wgs_gdc_realn.bam 96467113094 BAM harmonized CPTAC3 28017ff1-f4d8-485f-b4fd-a52523420749 ce00db170ed1c9f28e54d8452890e8d0 { 'aliquot_tag': 'ALQ_bf4deabb', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05427.WGS.T C3L-05427 LSCC WGS tumor CPT0284130006 CPT0284130006.WholeGenome.RP-2158.bam 31112324564 BAM aligned CPTAC3 a56bfc48-fb37-40a3-868d-e1ed0cb7b763 029a7667b029945119db5dd32355017b { 'aliquot_tag': 'ALQ_740444ad', 'gdc_sample_type': 'Primary Tumor' } @@ -17570,11 +18646,11 @@ C3L-05428.MethArray.Red.A C3L-05428 LSCC Methylation Array tissue_normal CPT0291 C3L-05428.MethArray.Red.T C3L-05428 LSCC Methylation Array tumor CPT0291810006 204372030090_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 9458439d-314f-4510-8ff9-29361752a5ef d7034f5f394b96eb1e525115cbba6338 { 'aliquot_tag': 'ALQ_b759693c', 'gdc_sample_type': 'Primary Tumor' } C3L-05428.miRNA-Seq.T C3L-05428 LSCC miRNA-Seq tumor CPT0291810009 200325_UNC31-K00269_0272_AHHC2NBBXY_CAACTA_S5_L001_R1_001.unaln.bam 267387157 BAM unaligned CPTAC3 5c302e2a-c45b-4638-b95a-0c536c939b90 d4ac39d9ba14932e2b10ef1e46abea76 { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor' } C3L-05428.miRNA-Seq.T.hg38 C3L-05428 LSCC miRNA-Seq tumor CPT0291810009 84acd2a0-dc88-4125-b5ac-cb038ac723ea_mirnaseq_gdc_realn.bam 298961510 BAM harmonized CPTAC3 66e2fdad-5f58-4147-84de-3ca1cb8b9cd1 ba6519bb7c3d18680990e610586c2831 { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-05428.RNA-Seq.chimeric.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 dbb109ef-107d-4e98-9c22-d67c1b7700cd.rna_seq.chimeric.gdc_realn.bam 101917054 BAM chimeric harmonized CPTAC3 c86882fa-aeae-4b8f-b253-395274857eaf 9eaa1f4a680581559372515b29da5893 { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-05428.RNA-Seq.genomic.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 dbb109ef-107d-4e98-9c22-d67c1b7700cd.rna_seq.genomic.gdc_realn.bam 6990246217 BAM genomic harmonized CPTAC3 487894d8-1047-4c17-9165-90c7ac8ac332 d53ba98d73c494e1113ab2d49939386c { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-05428.RNA-Seq.R1_L004.T C3L-05428 LSCC RNA-Seq tumor CPT0291810009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGCGAGAC-CATTGTTG_S13_L004_R1_001.fastq.gz 3442364882 FASTQ R1_L004 unaligned CPTAC3 5fabb5b3-0d33-4be8-92c3-d3239d33d978 73e5e1734fd71bce85adf761ac8bd02d { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-05428.RNA-Seq.R2_L004.T C3L-05428 LSCC RNA-Seq tumor CPT0291810009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGCGAGAC-CATTGTTG_S13_L004_R2_001.fastq.gz 3624151545 FASTQ R2_L004 unaligned CPTAC3 e5c5af32-42c1-4e4f-97f3-4bda6ed36973 4f2e492be320a4598ce0df0585fddff2 { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor' } -C3L-05428.RNA-Seq.transcriptome.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 dbb109ef-107d-4e98-9c22-d67c1b7700cd.rna_seq.transcriptome.gdc_realn.bam 8663047652 BAM transcriptome harmonized CPTAC3 a174727f-cbe7-4c71-9b83-fb93cd8dc2a9 32f3e131be17f6566ee5da1aab77643e { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor' } +C3L-05428.RNA-Seq.chimeric.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 de653a5e-c20d-4099-9982-8a0bd4f46496.rna_seq.chimeric.gdc_realn.bam 101906890 BAM chimeric harmonized CPTAC3 9ccc4094-56fb-4642-b139-c1d580db126e 330818ee75818f1b496fc64a3ea5abcf { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor' } +C3L-05428.RNA-Seq.genomic.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 de653a5e-c20d-4099-9982-8a0bd4f46496.rna_seq.genomic.gdc_realn.bam 6991738707 BAM genomic harmonized CPTAC3 c3c2a753-89a2-44f2-b883-2225b5cd75df 9c8cd8b8e13c5c3dfbd20c07c0359492 { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor' } +C3L-05428.RNA-Seq.R1_L004.T C3L-05428 LSCC RNA-Seq tumor CPT0291810009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGCGAGAC-CATTGTTG_S13_L004_R1_001.fastq.gz 3442364882 FASTQ R1_L004 unaligned CPTAC3 5fabb5b3-0d33-4be8-92c3-d3239d33d978 73e5e1734fd71bce85adf761ac8bd02d { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-05428.RNA-Seq.R2_L004.T C3L-05428 LSCC RNA-Seq tumor CPT0291810009 200428_UNC31-K00269_0275_AHGCJVBBXY_TGCGAGAC-CATTGTTG_S13_L004_R2_001.fastq.gz 3624151545 FASTQ R2_L004 unaligned CPTAC3 e5c5af32-42c1-4e4f-97f3-4bda6ed36973 4f2e492be320a4598ce0df0585fddff2 { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-05428.RNA-Seq.transcriptome.T.hg38 C3L-05428 LSCC RNA-Seq tumor CPT0291810009 de653a5e-c20d-4099-9982-8a0bd4f46496.rna_seq.transcriptome.gdc_realn.bam 9711237027 BAM transcriptome harmonized CPTAC3 f39fd343-26c2-4d7b-a642-ae0c1b4fbefb 797130fad973f92ba217f6891d6e4089 { 'aliquot_tag': 'ALQ_27e674ad', 'gdc_sample_type': 'Primary Tumor' } C3L-05428.WGS.N C3L-05428 LSCC WGS blood_normal CPT0291940005 CPT0291940005.WholeGenome.RP-2158.bam 26713109649 BAM aligned CPTAC3 f858d924-8cfd-4b5e-8817-93efe7375be9 49ce2827bce31f04ce3aaf96f27864cc { 'aliquot_tag': 'ALQ_2dec6453', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05428.WGS.N.hg38 C3L-05428 LSCC WGS blood_normal CPT0291940005 dce0b2ca-d48b-4e22-9e36-27c8e5e416f5_wgs_gdc_realn.bam 78704546334 BAM harmonized CPTAC3 8c8aa6d0-c603-40c5-ad5e-96c12012e21e 284ce87e66a06080f97dbd32e0e6773e { 'aliquot_tag': 'ALQ_2dec6453', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05428.WGS.T C3L-05428 LSCC WGS tumor CPT0291810006 CPT0291810006.WholeGenome.RP-2158.bam 24519926345 BAM aligned CPTAC3 b3c235ca-3f1c-4789-be85-a9d6cd5ada65 e51265c932893abf3901fffff6a1a925 { 'aliquot_tag': 'ALQ_b759693c', 'gdc_sample_type': 'Primary Tumor' } @@ -17585,33 +18661,54 @@ C3L-05428.WXS.N C3L-05428 LSCC WXS blood_normal CPT0291940005 CPT0291940005.Whol C3L-05428.WXS.N.hg38 C3L-05428 LSCC WXS blood_normal CPT0291940005 dce0b2ca-d48b-4e22-9e36-27c8e5e416f5_wxs_gdc_realn.bam 27128996700 BAM harmonized CPTAC3 e0e577de-1274-43bf-8429-4455a49bc8f0 0ba2ca5893c3718a5f77c9243bbd03ff { 'aliquot_tag': 'ALQ_2dec6453', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05428.WXS.T C3L-05428 LSCC WXS tumor CPT0291810006 CPT0291810006.WholeExome.RP-1303.bam 23608371967 BAM aligned CPTAC3 ac1ecbfd-471b-44a9-b30c-ffb502e82c03 1143dca543fa1105e2da62f32c6f87c6 { 'aliquot_tag': 'ALQ_b759693c', 'gdc_sample_type': 'Primary Tumor' } C3L-05428.WXS.T.hg38 C3L-05428 LSCC WXS tumor CPT0291810006 d15d106b-64ab-4e62-a0f3-dd22920946b7_wxs_gdc_realn.bam 32513969425 BAM harmonized CPTAC3 4ee6dd42-2580-49b0-a029-87b4f04d337d c976bf22b578d9a424002323a8eb866c { 'aliquot_tag': 'ALQ_b759693c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05448.RNA-Seq.R1_.T C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 20210723_P2_F3_WB7988-plate2_S63_R1_001.fastq.gz 4572720057 FASTQ R1_ unaligned CPTAC3 5e9ab5e9-a634-4d07-824b-f4e8ee9d6c48 25d6576979814018ff01197b65541216 { 'aliquot_tag': 'ALQ_877ef843', 'gdc_sample_type': 'Primary Tumor' } -C3L-05448.RNA-Seq.R2_.T C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 20210723_P2_F3_WB7988-plate2_S63_R2_001.fastq.gz 4726951635 FASTQ R2_ unaligned CPTAC3 8bafe422-0f9f-4758-a7b8-a6c209c556bc e0263cc9db7904c3321e32d10269d5b3 { 'aliquot_tag': 'ALQ_877ef843', 'gdc_sample_type': 'Primary Tumor' } -C3L-05459.RNA-Seq.R1_.T C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 20210729_P3_H2_WB7988-Plate3_S86_R1_001.fastq.gz 3492491548 FASTQ R1_ unaligned CPTAC3 0fd059e0-8cd2-4805-b894-e168b8a80c03 26e4a50cde3e13b05cd9ac4e7b996249 { 'aliquot_tag': 'ALQ_355e2453', 'gdc_sample_type': 'Primary Tumor' } -C3L-05459.RNA-Seq.R2_.T C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 20210729_P3_H2_WB7988-Plate3_S86_R2_001.fastq.gz 3621749148 FASTQ R2_ unaligned CPTAC3 160145eb-2e8c-497f-9985-4563f5193f36 82dc3b8a4116f5b2ae936df5301a98e7 { 'aliquot_tag': 'ALQ_355e2453', 'gdc_sample_type': 'Primary Tumor' } -C3L-05465.RNA-Seq.R1_.T C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 20210723_P2_A4_WB7988-plate2_S4_R1_001.fastq.gz 3613717401 FASTQ R1_ unaligned CPTAC3 6739f032-f05a-480d-b1d0-fced61f3632d 8afb91abe549d0af7e1d6b48412fbbd4 { 'aliquot_tag': 'ALQ_71420256', 'gdc_sample_type': 'Primary Tumor' } -C3L-05465.RNA-Seq.R2_.T C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 20210723_P2_A4_WB7988-plate2_S4_R2_001.fastq.gz 3694903230 FASTQ R2_ unaligned CPTAC3 3150177d-8dd0-46f7-ab8c-66b5510430ed dc63f3f26ab929bf9a805c5731d03ea8 { 'aliquot_tag': 'ALQ_71420256', 'gdc_sample_type': 'Primary Tumor' } +C3L-05448.RNA-Seq.chimeric.T.hg38 C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 691bab4a-4216-44fb-bfe9-23811cf81641.rna_seq.chimeric.gdc_realn.bam 127241384 BAM chimeric harmonized CPTAC3 bf3e4910-87fe-4357-ace5-88c0874d8b8c 0ff2ee26980be380ef709a6ab286a466 { 'aliquot_tag': 'ALQ_877ef843', 'gdc_sample_type': 'Primary Tumor' } +C3L-05448.RNA-Seq.genomic.T.hg38 C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 691bab4a-4216-44fb-bfe9-23811cf81641.rna_seq.genomic.gdc_realn.bam 7433271618 BAM genomic harmonized CPTAC3 c18423d5-5414-4662-902f-0de7a163f3b9 649c045598cf471e85625711f00cff26 { 'aliquot_tag': 'ALQ_877ef843', 'gdc_sample_type': 'Primary Tumor' } +C3L-05448.RNA-Seq.T C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 20210723_P2_F3_WB7988-plate2_S63_R1_001.fastq.gz 4572720057 FASTQ unaligned CPTAC3 5e9ab5e9-a634-4d07-824b-f4e8ee9d6c48 25d6576979814018ff01197b65541216 +C3L-05448.RNA-Seq.T C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 20210723_P2_F3_WB7988-plate2_S63_R2_001.fastq.gz 4726951635 FASTQ unaligned CPTAC3 8bafe422-0f9f-4758-a7b8-a6c209c556bc e0263cc9db7904c3321e32d10269d5b3 +C3L-05448.RNA-Seq.transcriptome.T.hg38 C3L-05448 HNSCC RNA-Seq tumor CPT0300810001 691bab4a-4216-44fb-bfe9-23811cf81641.rna_seq.transcriptome.gdc_realn.bam 4885048779 BAM transcriptome harmonized CPTAC3 7ff9fdb1-5576-40f1-80a4-d7bfad77905e eb3fc895ecd2141d2b491ab64efac047 { 'aliquot_tag': 'ALQ_877ef843', 'gdc_sample_type': 'Primary Tumor' } +C3L-05459.RNA-Seq.chimeric.T.hg38 C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 129b935b-8661-429d-b1a6-5a34cfaad656.rna_seq.chimeric.gdc_realn.bam 121584478 BAM chimeric harmonized CPTAC3 cb11b0c4-4986-4f17-ae21-65d7c1757042 b66d2bfd2df8cd2afc6ef9f5e1cc4bde { 'aliquot_tag': 'ALQ_355e2453', 'gdc_sample_type': 'Primary Tumor' } +C3L-05459.RNA-Seq.genomic.T.hg38 C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 129b935b-8661-429d-b1a6-5a34cfaad656.rna_seq.genomic.gdc_realn.bam 6283609377 BAM genomic harmonized CPTAC3 0f613a46-93b2-4a75-82d8-12e34fa2f1db 59346724db0ce30bfa843a2db9958932 { 'aliquot_tag': 'ALQ_355e2453', 'gdc_sample_type': 'Primary Tumor' } +C3L-05459.RNA-Seq.T C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 20210729_P3_H2_WB7988-Plate3_S86_R1_001.fastq.gz 3492491548 FASTQ unaligned CPTAC3 0fd059e0-8cd2-4805-b894-e168b8a80c03 26e4a50cde3e13b05cd9ac4e7b996249 +C3L-05459.RNA-Seq.T C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 20210729_P3_H2_WB7988-Plate3_S86_R2_001.fastq.gz 3621749148 FASTQ unaligned CPTAC3 160145eb-2e8c-497f-9985-4563f5193f36 82dc3b8a4116f5b2ae936df5301a98e7 +C3L-05459.RNA-Seq.transcriptome.T.hg38 C3L-05459 HNSCC RNA-Seq tumor CPT0300860001 129b935b-8661-429d-b1a6-5a34cfaad656.rna_seq.transcriptome.gdc_realn.bam 3252015206 BAM transcriptome harmonized CPTAC3 845772a1-3c26-4c8b-8acc-6a7b85a89375 15918b9107092f18a716409edeec1839 { 'aliquot_tag': 'ALQ_355e2453', 'gdc_sample_type': 'Primary Tumor' } +C3L-05465.RNA-Seq.chimeric.T.hg38 C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 02c2e6a5-4c4d-45f4-8a27-1dd6c19c2ba4.rna_seq.chimeric.gdc_realn.bam 132294776 BAM chimeric harmonized CPTAC3 2ecd3291-44d1-45f7-b1c4-bcd72f4a5289 34061b33d3116dd622705deaf33f97e8 { 'aliquot_tag': 'ALQ_71420256', 'gdc_sample_type': 'Primary Tumor' } +C3L-05465.RNA-Seq.genomic.T.hg38 C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 02c2e6a5-4c4d-45f4-8a27-1dd6c19c2ba4.rna_seq.genomic.gdc_realn.bam 6302744426 BAM genomic harmonized CPTAC3 a98e3073-584c-492a-9a50-91beef6768f5 d64dcaac21f3591c708c65423fffac62 { 'aliquot_tag': 'ALQ_71420256', 'gdc_sample_type': 'Primary Tumor' } +C3L-05465.RNA-Seq.T C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 20210723_P2_A4_WB7988-plate2_S4_R1_001.fastq.gz 3613717401 FASTQ unaligned CPTAC3 6739f032-f05a-480d-b1d0-fced61f3632d 8afb91abe549d0af7e1d6b48412fbbd4 +C3L-05465.RNA-Seq.T C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 20210723_P2_A4_WB7988-plate2_S4_R2_001.fastq.gz 3694903230 FASTQ unaligned CPTAC3 3150177d-8dd0-46f7-ab8c-66b5510430ed dc63f3f26ab929bf9a805c5731d03ea8 +C3L-05465.RNA-Seq.transcriptome.T.hg38 C3L-05465 HNSCC RNA-Seq tumor CPT0300900001 02c2e6a5-4c4d-45f4-8a27-1dd6c19c2ba4.rna_seq.transcriptome.gdc_realn.bam 3552076423 BAM transcriptome harmonized CPTAC3 268c58c7-b05c-404c-8d2c-6d6544297bdc 8b0c8ac4a5a458e7dd9062110228d162 { 'aliquot_tag': 'ALQ_71420256', 'gdc_sample_type': 'Primary Tumor' } C3L-05481.MethArray.Green.T C3L-05481 GBM Methylation Array tumor CPT0406370007 205555380136_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 b274228f-a33a-4fb8-be3d-4347e24c4b4e 225bc30691593a737d6c98434d1b23e1 { 'aliquot_tag': 'ALQ_8c2b00e6', 'gdc_sample_type': 'Primary Tumor' } C3L-05481.MethArray.Red.T C3L-05481 GBM Methylation Array tumor CPT0406370007 205555380136_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 b7cc2ed3-f7c8-4d53-9333-a4b3ae5995fe 0f7794d81e119ed0faf6458d6f782d13 { 'aliquot_tag': 'ALQ_8c2b00e6', 'gdc_sample_type': 'Primary Tumor' } C3L-05481.miRNA-Seq.T C3L-05481 GBM miRNA-Seq tumor CPT0406370010 210702_UNC32-K00270_0289_AHKJ22BBXY_GTCCGC_S15_L005_R1_001.unaln.bam 264616979 BAM unaligned CPTAC3 4f47ee8c-81de-4193-b564-8f30527bde03 bd7c43b58fe85ba387cab46d6dc954fc { 'aliquot_tag': 'ALQ_b54a404', 'gdc_sample_type': 'Primary Tumor' } +C3L-05481.miRNA-Seq.T.hg38 C3L-05481 GBM miRNA-Seq tumor CPT0406370010 beb1e815-10d6-4145-a590-b0bac3262df0_mirnaseq_gdc_realn.bam 301592256 BAM harmonized CPTAC3 be6181ff-2781-441f-94da-d9b4b4d648b7 bcd3ad9dab57609864be130c6e2d45bd { 'aliquot_tag': 'ALQ_b54a404', 'gdc_sample_type': 'Primary Tumor' } C3L-05481.REP_c39601d.miRNA-Seq.T C3L-05481 GBM miRNA-Seq tumor CPT0406370014 CPT3_06548_V0043_CACCGG_S1_L001_R1_001.unaln.bam 413940848 BAM unaligned CPTAC3 05af431a-cc4d-4fa4-9bdd-89c9d383c814 5d5b17d719a34b6fb2bc9e0dee77229f { 'aliquot_tag': 'REP_c39601d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA aliquot per UNC request' } -C3L-05481.REP_c39601d.RNA-Seq.R1_L008.T C3L-05481 GBM RNA-Seq tumor CPT0406370014 211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R1_001.fastq.gz 5087451384 FASTQ R1_L008 unaligned CPTAC3 3943d597-a775-439b-a983-db12f9b0ec2d 9ae0e4aeafca73fde582263acb70f39d { 'aliquot_tag': 'REP_c39601d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA aliquot per UNC request' } -C3L-05481.REP_c39601d.RNA-Seq.R2_L008.T C3L-05481 GBM RNA-Seq tumor CPT0406370014 211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R2_001.fastq.gz 5149213973 FASTQ R2_L008 unaligned CPTAC3 23eac32e-93a9-48a9-8cfd-f14448fb7fd5 35aa154ddbc3e6868b5f26f15f7e664f { 'aliquot_tag': 'REP_c39601d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA aliquot per UNC request' } +C3L-05481.REP_c39601d.miRNA-Seq.T.hg38 C3L-05481 GBM miRNA-Seq tumor CPT0406370014 207ea4f5-3879-4020-a97a-74c878ab4b97_mirnaseq_gdc_realn.bam 442930900 BAM harmonized CPTAC3 174e4802-6ddb-4836-90e7-1c058cf33a09 8cc0120124a1a575cedb352c1f6d6407 { 'aliquot_tag': 'REP_c39601d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA aliquot per UNC request' } +C3L-05481.REP_c39601d.RNA-Seq.chimeric.T.hg38 C3L-05481 GBM RNA-Seq tumor CPT0406370014 5c103fde-ce23-4090-839d-5801fa7cdd16.rna_seq.chimeric.gdc_realn.bam 77563686 BAM chimeric harmonized CPTAC3 e7ab2665-128f-4c63-9a08-44df946182c0 d0d4670ae1270f857e04a8bfc63c5e32 { 'aliquot_tag': 'REP_c39601d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA aliquot per UNC request' } +C3L-05481.REP_c39601d.RNA-Seq.genomic.T.hg38 C3L-05481 GBM RNA-Seq tumor CPT0406370014 5c103fde-ce23-4090-839d-5801fa7cdd16.rna_seq.genomic.gdc_realn.bam 10592084573 BAM genomic harmonized CPTAC3 2082ee2c-ae10-4125-ad40-a9543b528a1b 750c71c5e16ba369d476fdd671b12a7a { 'aliquot_tag': 'REP_c39601d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA aliquot per UNC request' } +C3L-05481.REP_c39601d.RNA-Seq.R1_L008.T C3L-05481 GBM RNA-Seq tumor CPT0406370014 211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R1_001.fastq.gz 5087451384 FASTQ R1_L008 unaligned CPTAC3 3943d597-a775-439b-a983-db12f9b0ec2d 9ae0e4aeafca73fde582263acb70f39d { 'aliquot_tag': 'REP_c39601d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA aliquot per UNC request', 'read': 'R1', 'lane': 'L008' } +C3L-05481.REP_c39601d.RNA-Seq.R2_L008.T C3L-05481 GBM RNA-Seq tumor CPT0406370014 211015_UNC32-K00270_0300_BHLMLVBBXY_ACCTTGGC-GGCCTCAT_S22_L008_R2_001.fastq.gz 5149213973 FASTQ R2_L008 unaligned CPTAC3 23eac32e-93a9-48a9-8cfd-f14448fb7fd5 35aa154ddbc3e6868b5f26f15f7e664f { 'aliquot_tag': 'REP_c39601d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA aliquot per UNC request', 'read': 'R2', 'lane': 'L008' } +C3L-05481.REP_c39601d.RNA-Seq.transcriptome.T.hg38 C3L-05481 GBM RNA-Seq tumor CPT0406370014 5c103fde-ce23-4090-839d-5801fa7cdd16.rna_seq.transcriptome.gdc_realn.bam 12581250677 BAM transcriptome harmonized CPTAC3 8e8438ad-e850-482a-9906-2709d8470ee7 5b190f2c0b46e370b832941aa6593c27 { 'aliquot_tag': 'REP_c39601d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA aliquot per UNC request' } C3L-05481.WGS.N C3L-05481 GBM WGS blood_normal CPT0402530002 CPT0402530002.WholeGenome.RP-2158.bam 29970507182 BAM aligned CPTAC3 bb8107e4-5d08-4ec2-864c-ef43b68e9592 c971d6cb2c361e6c02ff0643fde6b224 { 'aliquot_tag': 'ALQ_2bd795a7', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-05481.WGS.N.hg38 C3L-05481 GBM WGS blood_normal CPT0402530002 0ccef39f-8e6c-4a97-b5df-df5233a44e93_wgs_gdc_realn.bam 85653132726 BAM harmonized CPTAC3 299c23c9-022e-44e9-82fd-c42f53062863 ba393e5c4b564b287696738dab22fe0a { 'aliquot_tag': 'ALQ_2bd795a7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05481.WGS.T C3L-05481 GBM WGS tumor CPT0406370007 CPT0406370007.WholeGenome.RP-2158.bam 26730645651 BAM aligned CPTAC3 877bc903-d839-4593-9bda-139d1e265cd6 cfa533343db9a20296ffa876780aa333 { 'aliquot_tag': 'ALQ_8c2b00e6', 'gdc_sample_type': 'Primary Tumor' } +C3L-05481.WGS.T.hg38 C3L-05481 GBM WGS tumor CPT0406370007 a8b62182-6e82-446f-bd1f-e829cf7979c7_wgs_gdc_realn.bam 78487180893 BAM harmonized CPTAC3 7e51a55c-1945-4568-9355-6f037446733b 4d057f020233743d85f33cbc6cb94fc4 { 'aliquot_tag': 'ALQ_8c2b00e6', 'gdc_sample_type': 'Primary Tumor' } C3L-05481.WXS.N C3L-05481 GBM WXS blood_normal CPT0402530002 CPT0402530002.WholeExome.RP-1303.bam 25763962021 BAM aligned CPTAC3 e1266ab9-bddb-4450-a91c-99bef557e50c 9d57faa9638e8f0ee960aa1744bdb419 { 'aliquot_tag': 'ALQ_2bd795a7', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-05481.WXS.N.hg38 C3L-05481 GBM WXS blood_normal CPT0402530002 0ccef39f-8e6c-4a97-b5df-df5233a44e93_wxs_gdc_realn.bam 35734641239 BAM harmonized CPTAC3 c951e25c-569b-4330-9f20-c9cf57eb8291 63a915287afce5cc7c954209ccb0e937 { 'aliquot_tag': 'ALQ_2bd795a7', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05481.WXS.T C3L-05481 GBM WXS tumor CPT0406370007 CPT0406370007.WholeExome.RP-1303.bam 22329938537 BAM aligned CPTAC3 3d539fca-80f3-44fa-8984-c29a9b1eb26f fc5df7ed9642071d1df3a6696dbd1ecc { 'aliquot_tag': 'ALQ_8c2b00e6', 'gdc_sample_type': 'Primary Tumor' } +C3L-05481.WXS.T.hg38 C3L-05481 GBM WXS tumor CPT0406370007 a8b62182-6e82-446f-bd1f-e829cf7979c7_wxs_gdc_realn.bam 30699521739 BAM harmonized CPTAC3 e6b33d67-a8b0-42ce-8994-6e3e5e782da4 8414079d0f7b780a474c3e6ddc35fd21 { 'aliquot_tag': 'ALQ_8c2b00e6', 'gdc_sample_type': 'Primary Tumor' } C3L-05571.MethArray.Green.T C3L-05571 UCEC Methylation Array tumor CPT0275270009 204372030024_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 94b106fb-b0c9-4e73-917f-f9792591e6ec d6ed0930b2680bf5233e71cd3ebd4d1e { 'aliquot_tag': 'ALQ_e8f8944a', 'gdc_sample_type': 'Primary Tumor' } C3L-05571.MethArray.Red.T C3L-05571 UCEC Methylation Array tumor CPT0275270009 204372030024_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 7ef175a4-38e0-46ab-8634-93b3c4926cbc 3e030b20324cb1f88c2a3750d2421bdb { 'aliquot_tag': 'ALQ_e8f8944a', 'gdc_sample_type': 'Primary Tumor' } C3L-05571.miRNA-Seq.T C3L-05571 UCEC miRNA-Seq tumor CPT0275270006 200513_UNC31-K00269_0278_BHH7Y7BBXY_GACGAC_S41_L008_R1_001.unaln.bam 252365298 BAM unaligned CPTAC3 68c3bd9e-8acb-4f9f-976e-f7f1bf8ac0ae 1c23c36fb9b06a8aa42e4c82cf7ed060 { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor' } C3L-05571.miRNA-Seq.T.hg38 C3L-05571 UCEC miRNA-Seq tumor CPT0275270006 4d4fc8c8-6fcf-43c1-949c-8efc153cd3cc_mirnaseq_gdc_realn.bam 277898639 BAM harmonized CPTAC3 e3dbc3e5-624a-408e-84fc-7246980d86e6 1d74fae8408096b00aa52e1dec0937cf { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor' } -C3L-05571.RNA-Seq.chimeric.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 d352a360-ff2f-4653-a0a7-15e0a467883d.rna_seq.chimeric.gdc_realn.bam 31385951 BAM chimeric harmonized CPTAC3 a87373be-2b1d-4e1c-9ab4-faded50e5d9d 2d7533dc98be9b4720bd28ce0676e66c { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor' } -C3L-05571.RNA-Seq.genomic.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 d352a360-ff2f-4653-a0a7-15e0a467883d.rna_seq.genomic.gdc_realn.bam 7200464301 BAM genomic harmonized CPTAC3 f5d0f05e-fcf7-48f2-a604-b81fa07770a3 6526e251ef4f924b925ce41707d4c428 { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor' } -C3L-05571.RNA-Seq.R1_L008.T C3L-05571 UCEC RNA-Seq tumor CPT0275270006 200218_UNC31-K00269_0266_AHGKHKBBXY_GAATGAGA-GAGGCATT_S68_L008_R1_001.fastq.gz 3538685411 FASTQ R1_L008 unaligned CPTAC3 81f527a8-8a38-474b-a8e7-fd70b107bfc4 e7fa4f00a627383f222ebbaeefae034e { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor' } -C3L-05571.RNA-Seq.R1_.T C3L-05571 UCEC RNA-Seq tumor CPT0337550001 20210723_P2_G10_WB7988-plate2_S82_R1_001.fastq.gz 6462107526 FASTQ R1_ unaligned CPTAC3 f995e15d-bf67-4679-a6f6-0aa8a4af1593 d0157e053b11ab4eeee125c00a94407d { 'aliquot_tag': 'ALQ_85487430', 'gdc_sample_type': 'Primary Tumor' } -C3L-05571.RNA-Seq.R2_L008.T C3L-05571 UCEC RNA-Seq tumor CPT0275270006 200218_UNC31-K00269_0266_AHGKHKBBXY_GAATGAGA-GAGGCATT_S68_L008_R2_001.fastq.gz 3740963385 FASTQ R2_L008 unaligned CPTAC3 9ee12b8b-d9df-4948-80c5-cc88369fd22f 9cb9a7315c51c7d088f507b8e0c3834a { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor' } -C3L-05571.RNA-Seq.R2_.T C3L-05571 UCEC RNA-Seq tumor CPT0337550001 20210723_P2_G10_WB7988-plate2_S82_R2_001.fastq.gz 6578949131 FASTQ R2_ unaligned CPTAC3 5fddbe95-7779-4c60-9511-8268a891232b c99733a7a8cc1f3fd4af06158b4a7679 { 'aliquot_tag': 'ALQ_85487430', 'gdc_sample_type': 'Primary Tumor' } -C3L-05571.RNA-Seq.transcriptome.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 d352a360-ff2f-4653-a0a7-15e0a467883d.rna_seq.transcriptome.gdc_realn.bam 7456770073 BAM transcriptome harmonized CPTAC3 e70b52e9-84d8-4358-bad8-60c71e8060d1 3e3fede4b32df7420a9b61f375823e7f { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor' } +C3L-05571.RNA-Seq.chimeric.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 e46c7d6c-de37-4ccc-9acf-6424d5471da0.rna_seq.chimeric.gdc_realn.bam 31372704 BAM chimeric harmonized CPTAC3 59baf4c0-b84c-4982-8741-35f9bd287501 210cc55eb410e3bbcb95b4f48d83cdf2 { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor' } +C3L-05571.RNA-Seq.chimeric.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0337550001 46dd7e2c-8daf-4de0-8aa1-55d40fb0b2fd.rna_seq.chimeric.gdc_realn.bam 275239026 BAM chimeric harmonized CPTAC3 e4a0a1d9-9c88-4829-a210-9441b20f3af9 2b5f264deac1155c6791a50fd6d16aaf { 'aliquot_tag': 'ALQ_85487430', 'gdc_sample_type': 'Primary Tumor' } +C3L-05571.RNA-Seq.genomic.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 e46c7d6c-de37-4ccc-9acf-6424d5471da0.rna_seq.genomic.gdc_realn.bam 7201732289 BAM genomic harmonized CPTAC3 d65e77a6-0a45-45ff-8f9d-fb0587bacb79 6b55b67ba4187a9dd0108fd959cb03bd { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor' } +C3L-05571.RNA-Seq.genomic.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0337550001 46dd7e2c-8daf-4de0-8aa1-55d40fb0b2fd.rna_seq.genomic.gdc_realn.bam 11480968788 BAM genomic harmonized CPTAC3 33358c41-a242-4b2d-9708-2fcf511319db 724812968ea3449f368b783132a6022a { 'aliquot_tag': 'ALQ_85487430', 'gdc_sample_type': 'Primary Tumor' } +C3L-05571.RNA-Seq.R1_L008.T C3L-05571 UCEC RNA-Seq tumor CPT0275270006 200218_UNC31-K00269_0266_AHGKHKBBXY_GAATGAGA-GAGGCATT_S68_L008_R1_001.fastq.gz 3538685411 FASTQ R1_L008 unaligned CPTAC3 81f527a8-8a38-474b-a8e7-fd70b107bfc4 e7fa4f00a627383f222ebbaeefae034e { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-05571.RNA-Seq.R2_L008.T C3L-05571 UCEC RNA-Seq tumor CPT0275270006 200218_UNC31-K00269_0266_AHGKHKBBXY_GAATGAGA-GAGGCATT_S68_L008_R2_001.fastq.gz 3740963385 FASTQ R2_L008 unaligned CPTAC3 9ee12b8b-d9df-4948-80c5-cc88369fd22f 9cb9a7315c51c7d088f507b8e0c3834a { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-05571.RNA-Seq.T C3L-05571 UCEC RNA-Seq tumor CPT0337550001 20210723_P2_G10_WB7988-plate2_S82_R1_001.fastq.gz 6462107526 FASTQ unaligned CPTAC3 f995e15d-bf67-4679-a6f6-0aa8a4af1593 d0157e053b11ab4eeee125c00a94407d +C3L-05571.RNA-Seq.T C3L-05571 UCEC RNA-Seq tumor CPT0337550001 20210723_P2_G10_WB7988-plate2_S82_R2_001.fastq.gz 6578949131 FASTQ unaligned CPTAC3 5fddbe95-7779-4c60-9511-8268a891232b c99733a7a8cc1f3fd4af06158b4a7679 +C3L-05571.RNA-Seq.transcriptome.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0275270006 e46c7d6c-de37-4ccc-9acf-6424d5471da0.rna_seq.transcriptome.gdc_realn.bam 8480167613 BAM transcriptome harmonized CPTAC3 39fde842-7f5e-4555-bfff-e2ab4d1075b1 4af383e5c6874e353734b4c6be834bd7 { 'aliquot_tag': 'ALQ_784789db', 'gdc_sample_type': 'Primary Tumor' } +C3L-05571.RNA-Seq.transcriptome.T.hg38 C3L-05571 UCEC RNA-Seq tumor CPT0337550001 46dd7e2c-8daf-4de0-8aa1-55d40fb0b2fd.rna_seq.transcriptome.gdc_realn.bam 7631895360 BAM transcriptome harmonized CPTAC3 68be3b22-0571-48fc-8422-1b2c8549c2d8 37ec67b31f201ecc02662b9421a32d81 { 'aliquot_tag': 'ALQ_85487430', 'gdc_sample_type': 'Primary Tumor' } C3L-05571.WGS.N C3L-05571 UCEC WGS blood_normal CPT0273520002 CPT0273520002.WholeGenome.RP-2158.bam 25405372434 BAM aligned CPTAC3 76a015af-21d8-4fac-814f-82ab77d46413 c39376f063dae6ab7f3750335eaf1d4a { 'aliquot_tag': 'ALQ_c91fc730', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05571.WGS.N.hg38 C3L-05571 UCEC WGS blood_normal CPT0273520002 2154e8df-970e-44cf-a0d9-ee0a6cc3a8f6_wgs_gdc_realn.bam 72991842163 BAM harmonized CPTAC3 04fe5225-2758-4691-b709-934aa7656050 04eda63fbb1eb1e66d7ed63b3a4a93f0 { 'aliquot_tag': 'ALQ_c91fc730', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05571.WGS.T C3L-05571 UCEC WGS tumor CPT0275270009 CPT0275270009.WholeGenome.RP-2158.bam 25934538376 BAM aligned CPTAC3 55d91490-d181-4c83-a94f-2738bb68cc17 4ec1624d6c4a0e4a51b2df67e7bab03d { 'aliquot_tag': 'ALQ_e8f8944a', 'gdc_sample_type': 'Primary Tumor' } @@ -17620,15 +18717,28 @@ C3L-05571.WXS.N C3L-05571 UCEC WXS blood_normal CPT0273520002 CPT0273520002.Whol C3L-05571.WXS.N.hg38 C3L-05571 UCEC WXS blood_normal CPT0273520002 2154e8df-970e-44cf-a0d9-ee0a6cc3a8f6_wxs_gdc_realn.bam 28958627758 BAM harmonized CPTAC3 fa70a90c-6154-4ebb-ab94-a38428f80e4c f3a0d1315bc4d0daa0279fbcbf968146 { 'aliquot_tag': 'ALQ_c91fc730', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05571.WXS.T C3L-05571 UCEC WXS tumor CPT0275270009 CPT0275270009.WholeExome.RP-1303.bam 20077678617 BAM aligned CPTAC3 8f9927db-71ec-4605-a7e3-fe7f77aa1437 8742ce9e6ec204e90056444fc7a561c9 { 'aliquot_tag': 'ALQ_e8f8944a', 'gdc_sample_type': 'Primary Tumor' } C3L-05571.WXS.T.hg38 C3L-05571 UCEC WXS tumor CPT0275270009 63c942b4-6dcf-4ed7-8c57-d9216fb8ac87_wxs_gdc_realn.bam 28738175289 BAM harmonized CPTAC3 695ec101-5ecd-4552-ac22-a9b18ad41145 038874629eb81b3d6eaa935444dcc66e { 'aliquot_tag': 'ALQ_e8f8944a', 'gdc_sample_type': 'Primary Tumor' } -C3L-05574.RNA-Seq.R1_.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R1_001.fastq.gz 8967582982 FASTQ R1_ unaligned CPTAC3 d22359eb-1963-4331-ac8e-5bfe21da379a 5a5189070c658feb4331aa6946b85df3 { 'aliquot_tag': 'ALQ_c62ceb9f', 'gdc_sample_type': 'Primary Tumor' } -C3L-05574.RNA-Seq.R2_.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R2_001.fastq.gz 9279915842 FASTQ R2_ unaligned CPTAC3 0824ef96-da24-4447-b004-870d0a8f0e09 0affd61dd280a8e64422140fa56c3111 { 'aliquot_tag': 'ALQ_c62ceb9f', 'gdc_sample_type': 'Primary Tumor' } +C3L-05574.RNA-Seq.chimeric.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.chimeric.gdc_realn.bam 295797938 BAM chimeric harmonized CPTAC3 c85623bb-820c-46eb-ae98-610bc798105b 656f903838ec80c10780d2a54a42c05d { 'aliquot_tag': 'ALQ_c62ceb9f', 'gdc_sample_type': 'Primary Tumor' } +C3L-05574.RNA-Seq.genomic.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.genomic.gdc_realn.bam 13984956492 BAM genomic harmonized CPTAC3 f3d026dc-348d-4996-8f9c-2d6e3061c951 163fbb36e69e3c42e031201a5df9b76b { 'aliquot_tag': 'ALQ_c62ceb9f', 'gdc_sample_type': 'Primary Tumor' } +C3L-05574.RNA-Seq.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R1_001.fastq.gz 8967582982 FASTQ unaligned CPTAC3 d22359eb-1963-4331-ac8e-5bfe21da379a 5a5189070c658feb4331aa6946b85df3 +C3L-05574.RNA-Seq.T C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 20210714_P1_E7_WB7988_plate1_S55_R2_001.fastq.gz 9279915842 FASTQ unaligned CPTAC3 0824ef96-da24-4447-b004-870d0a8f0e09 0affd61dd280a8e64422140fa56c3111 +C3L-05574.RNA-Seq.transcriptome.T.hg38 C3L-05574 HNSCC RNA-Seq tumor CPT0337690001 80c9551c-c993-46e1-bb40-99c58d604a0b.rna_seq.transcriptome.gdc_realn.bam 8225640220 BAM transcriptome harmonized CPTAC3 314721fd-f0f0-48d0-abec-cd2871e4d2e3 133fbd299be3ec224d9e39901eae52a6 { 'aliquot_tag': 'ALQ_c62ceb9f', 'gdc_sample_type': 'Primary Tumor' } +C3L-05678.MethArray.Green.Tpb C3L-05678 AML Methylation Array tumor_peripheral_blood CPT0322890002 205707890143_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e984db26-9ec3-4b95-8958-f3cb8df408e1 80c99d6c79ae49ac209c379908874e17 { 'aliquot_tag': 'ALQ_fbbdf46c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05678.MethArray.Red.Tpb C3L-05678 AML Methylation Array tumor_peripheral_blood CPT0322890002 205707890143_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 c8466f3f-4fb5-4e14-aa20-4861d84fd222 0e36cd84b9481a8ea5e2544006c2763c { 'aliquot_tag': 'ALQ_fbbdf46c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05678.miRNA-Seq.Tpb C3L-05678 AML miRNA-Seq tumor_peripheral_blood CPT0322900002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCATTC_S18_L001_R1_001.unaln.bam 274806128 BAM unaligned CPTAC3 b1136002-c557-45e4-81a2-9faf732a1046 9dcb236863d2102319af1a2bafa8c6cc { 'aliquot_tag': 'ALQ_3df145b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05678.RNA-Seq.R1_L006.Tpb C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 211207_UNC32-K00270_0305_AHMW37BBXY_GGCTTAAG-TCGTGACC_S23_L006_R1_001.fastq.gz 3989940556 FASTQ R1_L006 unaligned CPTAC3 45e5054f-8448-4886-81a1-e3f10f0e9655 1fda4b8646b4fdc8bcfe1bc107254093 { 'aliquot_tag': 'ALQ_3df145b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05678.RNA-Seq.R2_L006.Tpb C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 211207_UNC32-K00270_0305_AHMW37BBXY_GGCTTAAG-TCGTGACC_S23_L006_R2_001.fastq.gz 4326609003 FASTQ R2_L006 unaligned CPTAC3 bb536e99-1c65-411e-8e81-25175f6e5b5e b0dcded2ae560d618ef2c4f0dfbcd7a1 { 'aliquot_tag': 'ALQ_3df145b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05678.miRNA-Seq.Tpb.hg38 C3L-05678 AML miRNA-Seq tumor_peripheral_blood CPT0322900002 f639b523-173f-4dd9-b3d9-043e100eb72b_mirnaseq_gdc_realn.bam 300837228 BAM harmonized CPTAC3 2400d97f-36e5-4da0-a084-ed535fe38eec 50f78620783a3a50e46ce436ee41b906 { 'aliquot_tag': 'ALQ_3df145b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05678.RNA-Seq.chimeric.Tpb.hg38 C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 8a2db5cc-15e6-4be0-9dc4-77c8f46f180a.rna_seq.chimeric.gdc_realn.bam 690338673 BAM chimeric harmonized CPTAC3 a1eb0896-ea46-431b-b682-c8f1ebd29607 6bf541e97651e4ebc2f401985e9ad360 { 'aliquot_tag': 'ALQ_3df145b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05678.RNA-Seq.genomic.Tpb.hg38 C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 8a2db5cc-15e6-4be0-9dc4-77c8f46f180a.rna_seq.genomic.gdc_realn.bam 8240761627 BAM genomic harmonized CPTAC3 c16b1fb4-e579-48d7-8fbb-e73ad186cc01 ecacc8570fc5c2cdd19f059d68cb9d1f { 'aliquot_tag': 'ALQ_3df145b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05678.RNA-Seq.R1_L006.Tpb C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 211207_UNC32-K00270_0305_AHMW37BBXY_GGCTTAAG-TCGTGACC_S23_L006_R1_001.fastq.gz 3989940556 FASTQ R1_L006 unaligned CPTAC3 45e5054f-8448-4886-81a1-e3f10f0e9655 1fda4b8646b4fdc8bcfe1bc107254093 { 'aliquot_tag': 'ALQ_3df145b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L006' } +C3L-05678.RNA-Seq.R2_L006.Tpb C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 211207_UNC32-K00270_0305_AHMW37BBXY_GGCTTAAG-TCGTGACC_S23_L006_R2_001.fastq.gz 4326609003 FASTQ R2_L006 unaligned CPTAC3 bb536e99-1c65-411e-8e81-25175f6e5b5e b0dcded2ae560d618ef2c4f0dfbcd7a1 { 'aliquot_tag': 'ALQ_3df145b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L006' } +C3L-05678.RNA-Seq.transcriptome.Tpb.hg38 C3L-05678 AML RNA-Seq tumor_peripheral_blood CPT0322900002 8a2db5cc-15e6-4be0-9dc4-77c8f46f180a.rna_seq.transcriptome.gdc_realn.bam 10180626358 BAM transcriptome harmonized CPTAC3 fab11fef-09b8-4fc1-8e87-be3572f2126d a4f93934d90ae42815ef7bd08b1756da { 'aliquot_tag': 'ALQ_3df145b8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05678.WGS.Nbc C3L-05678 AML WGS buccal_normal CPT0322820003 CPT0322820003.WholeGenome.RP-2158.bam 37551610573 BAM aligned CPTAC3 19ea11be-1597-4b4f-b0c8-0a895330b91b 9a28404cb857ff728b12da696a0e9b2a { 'aliquot_tag': 'ALQ_fb6af5eb', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05678.WGS.Nbc.hg38 C3L-05678 AML WGS buccal_normal CPT0322820003 1e4181e8-2336-4118-b562-34e9dcd705c4_wgs_gdc_realn.bam 108424647124 BAM harmonized CPTAC3 42c8a39f-c216-4b9b-9397-0e17f6c3787f 96154389d76439cf179000af4c4a7bcc { 'aliquot_tag': 'ALQ_fb6af5eb', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05678.WGS.Tpb C3L-05678 AML WGS tumor_peripheral_blood CPT0322890002 CPT0322890002.WholeGenome.RP-2158.bam 50765855054 BAM aligned CPTAC3 dbfba298-1cb2-4177-96e4-abf3fdc9cef9 7e788f86bdd848fcae8c71dd199ce0a0 { 'aliquot_tag': 'ALQ_fbbdf46c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05678.WGS.Tpb.hg38 C3L-05678 AML WGS tumor_peripheral_blood CPT0322890002 45aba417-f9a2-4ff1-9f61-773f71e6f49d_wgs_gdc_realn.bam 145743222871 BAM harmonized CPTAC3 c9e37e32-d97e-4d6d-8ea9-843141103d21 b5587bdf192159434d08a7b805f378cd { 'aliquot_tag': 'ALQ_fbbdf46c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05678.WXS.Nbc C3L-05678 AML WXS buccal_normal CPT0322820003 CPT0322820003.WholeExome.RP-1303.bam 29575006880 BAM aligned CPTAC3 092e9b56-5df1-4fd9-9335-41e7310494a4 66182043d961504a2f86a3f8f5265669 { 'aliquot_tag': 'ALQ_fb6af5eb', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05678.WXS.Nbc.hg38 C3L-05678 AML WXS buccal_normal CPT0322820003 1e4181e8-2336-4118-b562-34e9dcd705c4_wxs_gdc_realn.bam 40708797118 BAM harmonized CPTAC3 4a8cee33-0834-4a02-a43e-f3283b5334ec ab37797f32cf0391003eebf33d20f9e9 { 'aliquot_tag': 'ALQ_fb6af5eb', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05678.WXS.Tpb C3L-05678 AML WXS tumor_peripheral_blood CPT0322890002 CPT0322890002.WholeExome.RP-1303.bam 19733411791 BAM aligned CPTAC3 95de5148-16e1-466f-a70d-18ae84888ed9 c61c5f436523ca70675a193700b76684 { 'aliquot_tag': 'ALQ_fbbdf46c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05678.WXS.Tpb.hg38 C3L-05678 AML WXS tumor_peripheral_blood CPT0322890002 45aba417-f9a2-4ff1-9f61-773f71e6f49d_wxs_gdc_realn.bam 27372352224 BAM harmonized CPTAC3 cda1c1e0-3597-466d-9622-696ac0051602 badfd4cd79bae120b9dfab83fbd9ffe0 { 'aliquot_tag': 'ALQ_fbbdf46c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05693.MethArray.Green.A C3L-05693 LSCC Methylation Array tissue_normal CPT0284550006 204367490030_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9d3d131f-4256-4ff0-91c0-c4407cbbf318 277fe3cc547cbb5a9591a11dbb7d9685 { 'aliquot_tag': 'ALQ_60d5f31b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05693.MethArray.Green.T C3L-05693 LSCC Methylation Array tumor CPT0284540006 204372030139_R06C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e84337d9-8ec1-4f41-b470-a17fe1e88e7f 9c32bfb886d93a8247e1230fcd570a36 { 'aliquot_tag': 'ALQ_5db5daab', 'gdc_sample_type': 'Primary Tumor' } C3L-05693.MethArray.Red.A C3L-05693 LSCC Methylation Array tissue_normal CPT0284550006 204367490030_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 ac3a8f4b-08a0-49ff-bdcb-06e712ea0447 dd8183f80aceca2d2f620516f6c458df { 'aliquot_tag': 'ALQ_60d5f31b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -17637,16 +18747,16 @@ C3L-05693.miRNA-Seq.A C3L-05693 LSCC miRNA-Seq tissue_normal CPT0284550009 20051 C3L-05693.miRNA-Seq.A.hg38 C3L-05693 LSCC miRNA-Seq tissue_normal CPT0284550009 3fa78d4c-98cc-4a62-8c89-7c3ddd1b357c_mirnaseq_gdc_realn.bam 281220743 BAM harmonized CPTAC3 b302bb62-00ef-4705-bcc1-8f51b08efc43 9ab73f5e6d37e6599eb462f5c835b167 { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-05693.miRNA-Seq.T C3L-05693 LSCC miRNA-Seq tumor CPT0284540009 200224_UNC31-K00269_0267_AHC722BBXY_CATGGC_S34_L007_R1_001.unaln.bam 204402100 BAM unaligned CPTAC3 8e258968-f076-44f4-899f-0578ade428b1 4a5cb6587b60da98e9d3beec350382ec { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor' } C3L-05693.miRNA-Seq.T.hg38 C3L-05693 LSCC miRNA-Seq tumor CPT0284540009 98b48f0e-f2aa-43c3-a71e-6ec7f41e6522_mirnaseq_gdc_realn.bam 225150733 BAM harmonized CPTAC3 0b139a09-16d8-457d-950c-34b4a9c69f20 93bdbfe79e5cb0490ecf963e1a802a26 { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor' } -C3L-05693.RNA-Seq.chimeric.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 e868c06e-da3c-4542-bf77-59af8e20b6fa.rna_seq.chimeric.gdc_realn.bam 32673944 BAM chimeric harmonized CPTAC3 a4ab61ef-5df0-4c8b-b600-dac79518168e b01c8647d5db73444d420cf8ff43feb8 { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05693.RNA-Seq.chimeric.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 608486b2-3a77-4191-990a-0875df888137.rna_seq.chimeric.gdc_realn.bam 46406194 BAM chimeric harmonized CPTAC3 95b76b02-0dc1-4150-b2e2-60b64d3078d9 8269afe876dfbd0907af953d825a8ff2 { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor' } -C3L-05693.RNA-Seq.genomic.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 e868c06e-da3c-4542-bf77-59af8e20b6fa.rna_seq.genomic.gdc_realn.bam 7982930883 BAM genomic harmonized CPTAC3 ec0f4164-22e3-452e-b19d-5cc69ac06185 349aacaeb48c5436c6765acbf9bf381b { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05693.RNA-Seq.genomic.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 608486b2-3a77-4191-990a-0875df888137.rna_seq.genomic.gdc_realn.bam 10641606740 BAM genomic harmonized CPTAC3 c1c944e3-bfbf-4687-8d60-d34a13059e87 49de18cf8b33ebc545543d1106f65161 { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor' } -C3L-05693.RNA-Seq.R1_L001.T C3L-05693 LSCC RNA-Seq tumor CPT0284540009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGTTAGAA-TTCAGGTC_S2_L001_R1_001.fastq.gz 5135433715 FASTQ R1_L001 unaligned CPTAC3 72528177-da54-44e1-9b6d-3461942f09a3 697b17a8253cb873741c675b1b694011 { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor' } -C3L-05693.RNA-Seq.R1_L006.A C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L006_R1_001.fastq.gz 4007300060 FASTQ R1_L006 unaligned CPTAC3 41d75bd4-c284-404f-9997-d77ab8824fde ef1e903535526ab7625e66824ebd3e36 { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05693.RNA-Seq.R2_L001.T C3L-05693 LSCC RNA-Seq tumor CPT0284540009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGTTAGAA-TTCAGGTC_S2_L001_R2_001.fastq.gz 5795875630 FASTQ R2_L001 unaligned CPTAC3 fa73de66-06cd-4ffb-8d4e-a8bc87ac14db a4c0f2d1219e914638374725cbf49327 { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor' } -C3L-05693.RNA-Seq.R2_L006.A C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L006_R2_001.fastq.gz 4306863459 FASTQ R2_L006 unaligned CPTAC3 7e52534b-ef33-46e8-938e-4141a128b64d f1e048da2b169e544f4c8390176cbe56 { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05693.RNA-Seq.transcriptome.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 e868c06e-da3c-4542-bf77-59af8e20b6fa.rna_seq.transcriptome.gdc_realn.bam 8709786519 BAM transcriptome harmonized CPTAC3 36eaf2be-b336-49d6-8a19-037908a961f2 e00f2783380696850672cd61815b087f { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-05693.RNA-Seq.transcriptome.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 608486b2-3a77-4191-990a-0875df888137.rna_seq.transcriptome.gdc_realn.bam 12518416496 BAM transcriptome harmonized CPTAC3 6eda92f2-27dc-4f2f-809c-7fb43ed041ef e9b0a27b0305a9f20a1282c2c23f7c33 { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor' } +C3L-05693.RNA-Seq.chimeric.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 3151804a-3950-4b48-9a57-1edbc12a05bd.rna_seq.chimeric.gdc_realn.bam 32660251 BAM chimeric harmonized CPTAC3 6a01110f-344c-4658-a4a9-8b7eb1789169 020d4c35fabdb07238c249299c11b38d { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05693.RNA-Seq.chimeric.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 d0e2e065-0098-4488-ae65-fd00d49bdd97.rna_seq.chimeric.gdc_realn.bam 46387626 BAM chimeric harmonized CPTAC3 f195a644-ad9c-4c9c-bcae-fd15f2489712 31a88bae0d0e6a85fe8ae59cfa2e828b { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor' } +C3L-05693.RNA-Seq.genomic.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 3151804a-3950-4b48-9a57-1edbc12a05bd.rna_seq.genomic.gdc_realn.bam 7984122977 BAM genomic harmonized CPTAC3 15dc43a9-5f61-4034-b961-ebb5cf728615 bd03615914b258c572f998d65b9b18f8 { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05693.RNA-Seq.genomic.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 d0e2e065-0098-4488-ae65-fd00d49bdd97.rna_seq.genomic.gdc_realn.bam 10643167533 BAM genomic harmonized CPTAC3 14298e9d-e32c-4ae5-94e1-1b5fd3645a76 e5ff159a19f072de81e08054c6550f6b { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor' } +C3L-05693.RNA-Seq.R1_L001.T C3L-05693 LSCC RNA-Seq tumor CPT0284540009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGTTAGAA-TTCAGGTC_S2_L001_R1_001.fastq.gz 5135433715 FASTQ R1_L001 unaligned CPTAC3 72528177-da54-44e1-9b6d-3461942f09a3 697b17a8253cb873741c675b1b694011 { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3L-05693.RNA-Seq.R1_L006.A C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L006_R1_001.fastq.gz 4007300060 FASTQ R1_L006 unaligned CPTAC3 41d75bd4-c284-404f-9997-d77ab8824fde ef1e903535526ab7625e66824ebd3e36 { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-05693.RNA-Seq.R2_L001.T C3L-05693 LSCC RNA-Seq tumor CPT0284540009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGTTAGAA-TTCAGGTC_S2_L001_R2_001.fastq.gz 5795875630 FASTQ R2_L001 unaligned CPTAC3 fa73de66-06cd-4ffb-8d4e-a8bc87ac14db a4c0f2d1219e914638374725cbf49327 { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3L-05693.RNA-Seq.R2_L006.A C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L006_R2_001.fastq.gz 4306863459 FASTQ R2_L006 unaligned CPTAC3 7e52534b-ef33-46e8-938e-4141a128b64d f1e048da2b169e544f4c8390176cbe56 { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-05693.RNA-Seq.transcriptome.A.hg38 C3L-05693 LSCC RNA-Seq tissue_normal CPT0284550009 3151804a-3950-4b48-9a57-1edbc12a05bd.rna_seq.transcriptome.gdc_realn.bam 9929244537 BAM transcriptome harmonized CPTAC3 c6f902e0-34a1-484f-98cc-ae8b8c1f07ea 7bcad702f9144ff84658c0108bd41320 { 'aliquot_tag': 'ALQ_f06aee8a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-05693.RNA-Seq.transcriptome.T.hg38 C3L-05693 LSCC RNA-Seq tumor CPT0284540009 d0e2e065-0098-4488-ae65-fd00d49bdd97.rna_seq.transcriptome.gdc_realn.bam 14189626753 BAM transcriptome harmonized CPTAC3 1d1389d7-1bf4-4077-a982-9b8e2b7df0de c65c9384d407e0636059f959b31f200a { 'aliquot_tag': 'ALQ_cd0ac73a', 'gdc_sample_type': 'Primary Tumor' } C3L-05693.WGS.N C3L-05693 LSCC WGS blood_normal CPT0285840002 CPT0285840002.WholeGenome.RP-2158.bam 22708174541 BAM aligned CPTAC3 28f3e606-589c-40a5-a74d-0e40c054d11c 9e6f59b2332a465e3ec24b74b01d7af8 { 'aliquot_tag': 'ALQ_403106d8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05693.WGS.N.hg38 C3L-05693 LSCC WGS blood_normal CPT0285840002 75cf68ed-fd4e-4592-b25c-85c9263a2adb_wgs_gdc_realn.bam 66841189471 BAM harmonized CPTAC3 0fa3b175-51f3-439d-b80a-7cfe8ed0fbb8 1ed33fd0af00da6317b9cb9cb8115540 { 'aliquot_tag': 'ALQ_403106d8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05693.WGS.T C3L-05693 LSCC WGS tumor CPT0284540006 CPT0284540006.WholeGenome.RP-2158.bam 22594747192 BAM aligned CPTAC3 37c561fd-6a83-419b-81cd-1832e1a8195e 1bfbc220f37c4e552fa7add212955de8 { 'aliquot_tag': 'ALQ_5db5daab', 'gdc_sample_type': 'Primary Tumor' } @@ -17657,59 +18767,124 @@ C3L-05693.WXS.N C3L-05693 LSCC WXS blood_normal CPT0285840002 CPT0285840002.Whol C3L-05693.WXS.N.hg38 C3L-05693 LSCC WXS blood_normal CPT0285840002 75cf68ed-fd4e-4592-b25c-85c9263a2adb_wxs_gdc_realn.bam 37769208291 BAM harmonized CPTAC3 935ee27e-bb7f-4ba8-99b9-0fcfd5a0c65a 06f99a81b6a4bacbc157e12df6ca972b { 'aliquot_tag': 'ALQ_403106d8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05693.WXS.T C3L-05693 LSCC WXS tumor CPT0284540006 CPT0284540006.WholeExome.RP-1303.bam 20527228697 BAM aligned CPTAC3 502c3c14-0dfd-4475-bb7e-e577a1d1fd54 e7e48e2db9f44f133c136524e17cb436 { 'aliquot_tag': 'ALQ_5db5daab', 'gdc_sample_type': 'Primary Tumor' } C3L-05693.WXS.T.hg38 C3L-05693 LSCC WXS tumor CPT0284540006 7fde45f8-250d-45d1-827c-9f5313c7e614_wxs_gdc_realn.bam 28036240362 BAM harmonized CPTAC3 d5ac75aa-2173-40ba-aa89-0fc2ab777da8 51bb5054b93678173cdbe41572f1cad3 { 'aliquot_tag': 'ALQ_5db5daab', 'gdc_sample_type': 'Primary Tumor' } -C3L-05719.RNA-Seq.R1_.T C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 20210723_P2_G12_WB7988-plate2_S84_R1_001.fastq.gz 5598981880 FASTQ R1_ unaligned CPTAC3 a23e02d5-cd7a-4771-977c-51c715534f71 e83c90e5b089b9048c426c11b265647d { 'aliquot_tag': 'ALQ_c146a35f', 'gdc_sample_type': 'Primary Tumor' } -C3L-05719.RNA-Seq.R2_.T C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 20210723_P2_G12_WB7988-plate2_S84_R2_001.fastq.gz 5805631438 FASTQ R2_ unaligned CPTAC3 3522f3a0-b4e0-455c-a3b0-3c200008c843 712cfb0b18c6c1f49a8148b7f570ef08 { 'aliquot_tag': 'ALQ_c146a35f', 'gdc_sample_type': 'Primary Tumor' } -C3L-05759.RNA-Seq.R1_.T C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 20210714_P1_G5_WB7988_plate1_S76_R1_001.fastq.gz 8677954460 FASTQ R1_ unaligned CPTAC3 60c00409-af2c-470f-8482-dc225cfd9133 8ca4ad128d06e84080634cd58e890d6d { 'aliquot_tag': 'ALQ_dfa066ae', 'gdc_sample_type': 'Primary Tumor' } -C3L-05759.RNA-Seq.R2_.T C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 20210714_P1_G5_WB7988_plate1_S76_R2_001.fastq.gz 8995857084 FASTQ R2_ unaligned CPTAC3 eb31ec00-8e43-45ff-a95d-816e4efd9974 a119decf5079ff7226caf5fcc939e056 { 'aliquot_tag': 'ALQ_dfa066ae', 'gdc_sample_type': 'Primary Tumor' } -C3L-05761.RNA-Seq.R1_.T C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 20210723_P2_A12_WB7988-plate2_S12_R1_001.fastq.gz 2960361213 FASTQ R1_ unaligned CPTAC3 68bff273-36c4-458a-9c71-6df9dd8e4595 176a3b8235f4c9c845022de8fb319940 { 'aliquot_tag': 'ALQ_5fc60d9c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05761.RNA-Seq.R2_.T C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 20210723_P2_A12_WB7988-plate2_S12_R2_001.fastq.gz 3104514210 FASTQ R2_ unaligned CPTAC3 4bc066af-2499-41b7-a25c-254529224972 d52366378631d2f2b01ffd4db2ecbc01 { 'aliquot_tag': 'ALQ_5fc60d9c', 'gdc_sample_type': 'Primary Tumor' } -C3L-05763.RNA-Seq.R1_.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R1_001.fastq.gz 5233557068 FASTQ R1_ unaligned CPTAC3 facce343-1069-418e-a147-21ce454ae89b a1b39d30ca817f339e1fcb2113f64429 { 'aliquot_tag': 'ALQ_ee5a8d59', 'gdc_sample_type': 'Primary Tumor' } -C3L-05763.RNA-Seq.R2_.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R2_001.fastq.gz 5396660473 FASTQ R2_ unaligned CPTAC3 5080671f-2a43-47ef-bb3a-eb50c5ce36d3 6c715b3ac94f59c21451b868c01d0261 { 'aliquot_tag': 'ALQ_ee5a8d59', 'gdc_sample_type': 'Primary Tumor' } +C3L-05719.RNA-Seq.chimeric.T.hg38 C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 0dacbada-e47f-4964-b5e8-80b4841b8358.rna_seq.chimeric.gdc_realn.bam 167330578 BAM chimeric harmonized CPTAC3 00070528-9440-4790-b35b-af5328ae624f 3d4214d3047e95205a717ac47362887b { 'aliquot_tag': 'ALQ_c146a35f', 'gdc_sample_type': 'Primary Tumor' } +C3L-05719.RNA-Seq.genomic.T.hg38 C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 0dacbada-e47f-4964-b5e8-80b4841b8358.rna_seq.genomic.gdc_realn.bam 11377449704 BAM genomic harmonized CPTAC3 df662ce8-ffaf-4231-8ebd-beb12fa901e8 5a9d1b3fca660311a8b6142a0132a294 { 'aliquot_tag': 'ALQ_c146a35f', 'gdc_sample_type': 'Primary Tumor' } +C3L-05719.RNA-Seq.T C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 20210723_P2_G12_WB7988-plate2_S84_R1_001.fastq.gz 5598981880 FASTQ unaligned CPTAC3 a23e02d5-cd7a-4771-977c-51c715534f71 e83c90e5b089b9048c426c11b265647d +C3L-05719.RNA-Seq.T C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 20210723_P2_G12_WB7988-plate2_S84_R2_001.fastq.gz 5805631438 FASTQ unaligned CPTAC3 3522f3a0-b4e0-455c-a3b0-3c200008c843 712cfb0b18c6c1f49a8148b7f570ef08 +C3L-05719.RNA-Seq.transcriptome.T.hg38 C3L-05719 HNSCC RNA-Seq tumor CPT0337880001 0dacbada-e47f-4964-b5e8-80b4841b8358.rna_seq.transcriptome.gdc_realn.bam 6537590889 BAM transcriptome harmonized CPTAC3 8a3f152a-661b-4257-a142-dc50f6f4f4e3 47c6c054e4f785dc6dafa883109d88fd { 'aliquot_tag': 'ALQ_c146a35f', 'gdc_sample_type': 'Primary Tumor' } +C3L-05759.RNA-Seq.chimeric.T.hg38 C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 e85b9746-4668-432d-a6d1-133ecf341047.rna_seq.chimeric.gdc_realn.bam 219596070 BAM chimeric harmonized CPTAC3 9054894e-25de-4414-a00d-7f0fd204ee29 de95f5388850b0716587f721f533874c { 'aliquot_tag': 'ALQ_dfa066ae', 'gdc_sample_type': 'Primary Tumor' } +C3L-05759.RNA-Seq.genomic.T.hg38 C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 e85b9746-4668-432d-a6d1-133ecf341047.rna_seq.genomic.gdc_realn.bam 13355746485 BAM genomic harmonized CPTAC3 5af1d13e-1c6c-406c-9005-d07512a4d834 df386916467199c8511378687be6a443 { 'aliquot_tag': 'ALQ_dfa066ae', 'gdc_sample_type': 'Primary Tumor' } +C3L-05759.RNA-Seq.T C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 20210714_P1_G5_WB7988_plate1_S76_R1_001.fastq.gz 8677954460 FASTQ unaligned CPTAC3 60c00409-af2c-470f-8482-dc225cfd9133 8ca4ad128d06e84080634cd58e890d6d +C3L-05759.RNA-Seq.T C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 20210714_P1_G5_WB7988_plate1_S76_R2_001.fastq.gz 8995857084 FASTQ unaligned CPTAC3 eb31ec00-8e43-45ff-a95d-816e4efd9974 a119decf5079ff7226caf5fcc939e056 +C3L-05759.RNA-Seq.transcriptome.T.hg38 C3L-05759 HNSCC RNA-Seq tumor CPT0315980001 e85b9746-4668-432d-a6d1-133ecf341047.rna_seq.transcriptome.gdc_realn.bam 12903401938 BAM transcriptome harmonized CPTAC3 c213e434-9dd6-4b08-ab72-cd81750349da 2817ec25f4838c4b21ad409fc72fcf08 { 'aliquot_tag': 'ALQ_dfa066ae', 'gdc_sample_type': 'Primary Tumor' } +C3L-05761.RNA-Seq.chimeric.T.hg38 C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 602137f6-307a-483a-a521-db65cddab3a5.rna_seq.chimeric.gdc_realn.bam 81190401 BAM chimeric harmonized CPTAC3 8029818b-a6d1-4ec0-9491-a648df960df7 00220892e166aa40656c33faed94c41c { 'aliquot_tag': 'ALQ_5fc60d9c', 'gdc_sample_type': 'Primary Tumor' } +C3L-05761.RNA-Seq.genomic.T.hg38 C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 602137f6-307a-483a-a521-db65cddab3a5.rna_seq.genomic.gdc_realn.bam 6717730749 BAM genomic harmonized CPTAC3 8c2c40b3-6b3f-4aac-86b8-fb38ee842f45 2526cb17e53d8d98b65506545772cb0d { 'aliquot_tag': 'ALQ_5fc60d9c', 'gdc_sample_type': 'Primary Tumor' } +C3L-05761.RNA-Seq.T C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 20210723_P2_A12_WB7988-plate2_S12_R1_001.fastq.gz 2960361213 FASTQ unaligned CPTAC3 68bff273-36c4-458a-9c71-6df9dd8e4595 176a3b8235f4c9c845022de8fb319940 +C3L-05761.RNA-Seq.T C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 20210723_P2_A12_WB7988-plate2_S12_R2_001.fastq.gz 3104514210 FASTQ unaligned CPTAC3 4bc066af-2499-41b7-a25c-254529224972 d52366378631d2f2b01ffd4db2ecbc01 +C3L-05761.RNA-Seq.transcriptome.T.hg38 C3L-05761 HNSCC RNA-Seq tumor CPT0316410001 602137f6-307a-483a-a521-db65cddab3a5.rna_seq.transcriptome.gdc_realn.bam 3180616412 BAM transcriptome harmonized CPTAC3 ad33171c-7889-4294-bf2c-d0194394f15f f879ce6d4f428be5608f00dbd607c74e { 'aliquot_tag': 'ALQ_5fc60d9c', 'gdc_sample_type': 'Primary Tumor' } +C3L-05763.RNA-Seq.chimeric.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.chimeric.gdc_realn.bam 137504785 BAM chimeric harmonized CPTAC3 0fb4160b-cb5e-40b7-a793-b19efe0a6a19 871c2abaefdfac672e6044d5584c7328 { 'aliquot_tag': 'ALQ_ee5a8d59', 'gdc_sample_type': 'Primary Tumor' } +C3L-05763.RNA-Seq.genomic.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.genomic.gdc_realn.bam 9596981630 BAM genomic harmonized CPTAC3 f32c2136-20d8-4ed2-84ba-38da795d2c28 d95ffcde380d5e4b5e185ced5296778a { 'aliquot_tag': 'ALQ_ee5a8d59', 'gdc_sample_type': 'Primary Tumor' } +C3L-05763.RNA-Seq.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R1_001.fastq.gz 5233557068 FASTQ unaligned CPTAC3 facce343-1069-418e-a147-21ce454ae89b a1b39d30ca817f339e1fcb2113f64429 +C3L-05763.RNA-Seq.T C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 20210723_P2_B9_WB7988-plate2_S21_R2_001.fastq.gz 5396660473 FASTQ unaligned CPTAC3 5080671f-2a43-47ef-bb3a-eb50c5ce36d3 6c715b3ac94f59c21451b868c01d0261 +C3L-05763.RNA-Seq.transcriptome.T.hg38 C3L-05763 HNSCC RNA-Seq tumor CPT0316530001 83a3bc4f-33c8-4455-85fc-73cccf362134.rna_seq.transcriptome.gdc_realn.bam 8110124991 BAM transcriptome harmonized CPTAC3 9cd4cf0f-a587-405e-8105-5c46858d2d22 3811fcb355f611e0a2cf7b1d9dbfeef1 { 'aliquot_tag': 'ALQ_ee5a8d59', 'gdc_sample_type': 'Primary Tumor' } +C3L-05811.MethArray.Green.Tpb C3L-05811 AML Methylation Array tumor_peripheral_blood CPT0356770002 205707890036_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 5c8821fb-9334-43c9-a149-fa61d27e72a0 99d1955cb3ca819325195995b7457f1d { 'aliquot_tag': 'ALQ_4b51d5d2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05811.MethArray.Red.Tpb C3L-05811 AML Methylation Array tumor_peripheral_blood CPT0356770002 205707890036_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 00221a20-250a-4836-81a2-a451202e0711 3699403a3153f331c7199aabe4ba8bc9 { 'aliquot_tag': 'ALQ_4b51d5d2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05811.miRNA-Seq.Tpb C3L-05811 AML miRNA-Seq tumor_peripheral_blood CPT0356750002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTTGTA_S32_L002_R1_001.unaln.bam 163702318 BAM unaligned CPTAC3 19912d4a-0364-400f-96dc-c43cf3233c4d d2d3e9ddc388beefae7d4e70fafcfe2f { 'aliquot_tag': 'ALQ_319186b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05811.RNA-Seq.R1_L002.Tpb C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 211207_UNC32-K00270_0306_BHMW5YBBXY_TTACAGGA-TGACAAGC_S8_L002_R1_001.fastq.gz 3684732251 FASTQ R1_L002 unaligned CPTAC3 6cb1b5aa-f403-498d-9050-f332ff16ac92 39f9427dc032ec222492477d3e883a3b { 'aliquot_tag': 'ALQ_319186b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05811.RNA-Seq.R2_L002.Tpb C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 211207_UNC32-K00270_0306_BHMW5YBBXY_TTACAGGA-TGACAAGC_S8_L002_R2_001.fastq.gz 3855866298 FASTQ R2_L002 unaligned CPTAC3 af2c450c-3d51-4d43-ba60-0d8eb62b45bf 3915ab07b23d69bbf76283bba5f7293c { 'aliquot_tag': 'ALQ_319186b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05811.miRNA-Seq.Tpb.hg38 C3L-05811 AML miRNA-Seq tumor_peripheral_blood CPT0356750002 5ac8604c-80da-4dea-a3ec-63a9ff6ab696_mirnaseq_gdc_realn.bam 185116772 BAM harmonized CPTAC3 c194f16d-24ee-4519-8d20-ce130ecea63e 9b4871b054f4cead4d886e3a5ef579cd { 'aliquot_tag': 'ALQ_319186b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05811.RNA-Seq.chimeric.Tpb.hg38 C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 156ebc70-9de3-431d-9f1f-676c5b8c2aa5.rna_seq.chimeric.gdc_realn.bam 716108042 BAM chimeric harmonized CPTAC3 dfa0ac27-522d-4473-a20f-0f5241f368c7 8dd238f1eefd6616be1d0d230f21cfed { 'aliquot_tag': 'ALQ_319186b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05811.RNA-Seq.genomic.Tpb.hg38 C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 156ebc70-9de3-431d-9f1f-676c5b8c2aa5.rna_seq.genomic.gdc_realn.bam 7336963723 BAM genomic harmonized CPTAC3 9be7dcb3-ca6a-4d18-9665-e8a0f0271070 e0e25edb7ba713fd28023aa44a25ecef { 'aliquot_tag': 'ALQ_319186b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05811.RNA-Seq.R1_L002.Tpb C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 211207_UNC32-K00270_0306_BHMW5YBBXY_TTACAGGA-TGACAAGC_S8_L002_R1_001.fastq.gz 3684732251 FASTQ R1_L002 unaligned CPTAC3 6cb1b5aa-f403-498d-9050-f332ff16ac92 39f9427dc032ec222492477d3e883a3b { 'aliquot_tag': 'ALQ_319186b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L002' } +C3L-05811.RNA-Seq.R2_L002.Tpb C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 211207_UNC32-K00270_0306_BHMW5YBBXY_TTACAGGA-TGACAAGC_S8_L002_R2_001.fastq.gz 3855866298 FASTQ R2_L002 unaligned CPTAC3 af2c450c-3d51-4d43-ba60-0d8eb62b45bf 3915ab07b23d69bbf76283bba5f7293c { 'aliquot_tag': 'ALQ_319186b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L002' } +C3L-05811.RNA-Seq.transcriptome.Tpb.hg38 C3L-05811 AML RNA-Seq tumor_peripheral_blood CPT0356750002 156ebc70-9de3-431d-9f1f-676c5b8c2aa5.rna_seq.transcriptome.gdc_realn.bam 6607803379 BAM transcriptome harmonized CPTAC3 81b2b1c6-26c8-4ad2-baaf-bf0b7b630b91 e5b9579464d2de943ad0ac399b79cc99 { 'aliquot_tag': 'ALQ_319186b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05811.WGS.Nbc C3L-05811 AML WGS buccal_normal CPT0356860003 CPT0356860003.WholeGenome.RP-2158.bam 43865214372 BAM aligned CPTAC3 159a8cdc-8a9c-40db-893e-d5e2d4ebfa3d 227647f57fc0943ddba095566be7ed1f { 'aliquot_tag': 'ALQ_f0607e21', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05811.WGS.Nbc.hg38 C3L-05811 AML WGS buccal_normal CPT0356860003 c711930c-7ca6-48e3-93c3-b3dd56557045_wgs_gdc_realn.bam 129587914122 BAM harmonized CPTAC3 181017af-d709-456e-ac61-d28f02aee849 5f7cc1418d53a0ac91c3af9e0f2af3c7 { 'aliquot_tag': 'ALQ_f0607e21', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05811.WGS.Tpb C3L-05811 AML WGS tumor_peripheral_blood CPT0356770002 CPT0356770002.WholeGenome.RP-2158.bam 49051939501 BAM aligned CPTAC3 c6138ef5-0dca-406a-892e-f60f521a5a64 655c0d02c609075dd433cb388c4eac2b { 'aliquot_tag': 'ALQ_4b51d5d2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05811.WGS.Tpb.hg38 C3L-05811 AML WGS tumor_peripheral_blood CPT0356770002 e860a435-3ead-4be6-ab3d-8bb21f72ace8_wgs_gdc_realn.bam 142650707608 BAM harmonized CPTAC3 4871fd28-e3ed-4c5a-b4a3-1610aa2281c9 a79d69331ef43919f9e8f94ad2248853 { 'aliquot_tag': 'ALQ_4b51d5d2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05811.WXS.Nbc C3L-05811 AML WXS buccal_normal CPT0356860003 CPT0356860003.WholeExome.RP-1303.bam 21301774662 BAM aligned CPTAC3 dff4c51a-6123-4a6f-abae-dff2f12e1ef8 88aec7db1d2974ce12c1ba7687cc7914 { 'aliquot_tag': 'ALQ_f0607e21', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05811.WXS.Nbc.hg38 C3L-05811 AML WXS buccal_normal CPT0356860003 c711930c-7ca6-48e3-93c3-b3dd56557045_wxs_gdc_realn.bam 28750136778 BAM harmonized CPTAC3 46925dff-cc17-4171-abf7-d449977beb8f 6b5b3f7bd4d0e7449d51561029106da6 { 'aliquot_tag': 'ALQ_f0607e21', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05811.WXS.Tpb C3L-05811 AML WXS tumor_peripheral_blood CPT0356770002 CPT0356770002.WholeExome.RP-1303.bam 25918598554 BAM aligned CPTAC3 7fb6b556-8477-4c9b-a895-6c0513f94966 1092209188cf7df9de9ee128de98029d { 'aliquot_tag': 'ALQ_4b51d5d2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05811.WXS.Tpb.hg38 C3L-05811 AML WXS tumor_peripheral_blood CPT0356770002 e860a435-3ead-4be6-ab3d-8bb21f72ace8_wxs_gdc_realn.bam 35859996899 BAM harmonized CPTAC3 a55b5583-f9f9-4864-b605-0c5e79d270b6 6f5b968fe24016b9c0037aabbe5221a4 { 'aliquot_tag': 'ALQ_4b51d5d2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05815.MethArray.Green.Tpb C3L-05815 AML Methylation Array tumor_peripheral_blood CPT0323050002 205987780094_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 2ecca0b9-956c-4d6d-bee8-890ea77cdf63 f8f48ccfa535746d750891d61f61ae43 { 'aliquot_tag': 'ALQ_746990b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05815.MethArray.Red.Tpb C3L-05815 AML Methylation Array tumor_peripheral_blood CPT0323050002 205987780094_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 9f50894f-848a-4160-b1c1-cddb9155596a bbd7343e4b946d3c88d6971d8bcb8cb2 { 'aliquot_tag': 'ALQ_746990b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05815.miRNA-Seq.Tpb C3L-05815 AML miRNA-Seq tumor_peripheral_blood CPT0323060002 220125_UNC32-K00270_0311_AHMNYYBBXY_TATAAT_S17_L001_R1_001.unaln.bam 268517372 BAM unaligned CPTAC3 bfaaf5c7-5170-4ff3-9202-03cba09523c0 e4bba3c195ce7f72c99520291490e1d6 { 'aliquot_tag': 'ALQ_33c9ea64', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05815.RNA-Seq.R1_L006.Tpb C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 211207_UNC32-K00270_0305_AHMW37BBXY_TTGGACTC-GGAAGCAG_S24_L006_R1_001.fastq.gz 3863776464 FASTQ R1_L006 unaligned CPTAC3 fb78f19a-d92a-4214-934c-10228f1eedab 6421d73d606a2dd61229d3ae62de35c1 { 'aliquot_tag': 'ALQ_33c9ea64', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05815.RNA-Seq.R2_L006.Tpb C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 211207_UNC32-K00270_0305_AHMW37BBXY_TTGGACTC-GGAAGCAG_S24_L006_R2_001.fastq.gz 4160927650 FASTQ R2_L006 unaligned CPTAC3 b97520ae-3d6d-45bd-8432-fe15b935ee85 4cb803e3de73ea0d4b4e37cf55a1b5f1 { 'aliquot_tag': 'ALQ_33c9ea64', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05815.miRNA-Seq.Tpb.hg38 C3L-05815 AML miRNA-Seq tumor_peripheral_blood CPT0323060002 09bd1f13-259e-41ad-af80-0b8d67d0f1a0_mirnaseq_gdc_realn.bam 292469975 BAM harmonized CPTAC3 5dd7d006-0f75-473c-b568-a28bb78e8f07 664d3c649264446440cab41e216b154c { 'aliquot_tag': 'ALQ_33c9ea64', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05815.RNA-Seq.chimeric.Tpb.hg38 C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 1bce650c-da88-457d-af5a-7ee7767b8d81.rna_seq.chimeric.gdc_realn.bam 814872793 BAM chimeric harmonized CPTAC3 892b16a0-49d8-49b2-95a0-787b98a3a0d1 611a087b13f43ce8cc28a07cf0f9d55c { 'aliquot_tag': 'ALQ_33c9ea64', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05815.RNA-Seq.genomic.Tpb.hg38 C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 1bce650c-da88-457d-af5a-7ee7767b8d81.rna_seq.genomic.gdc_realn.bam 7738469029 BAM genomic harmonized CPTAC3 d952e72d-3f8b-4bac-ab78-6c511c8179e7 1f6035f3a10b81422ef6d39051788385 { 'aliquot_tag': 'ALQ_33c9ea64', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05815.RNA-Seq.R1_L006.Tpb C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 211207_UNC32-K00270_0305_AHMW37BBXY_TTGGACTC-GGAAGCAG_S24_L006_R1_001.fastq.gz 3863776464 FASTQ R1_L006 unaligned CPTAC3 fb78f19a-d92a-4214-934c-10228f1eedab 6421d73d606a2dd61229d3ae62de35c1 { 'aliquot_tag': 'ALQ_33c9ea64', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L006' } +C3L-05815.RNA-Seq.R2_L006.Tpb C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 211207_UNC32-K00270_0305_AHMW37BBXY_TTGGACTC-GGAAGCAG_S24_L006_R2_001.fastq.gz 4160927650 FASTQ R2_L006 unaligned CPTAC3 b97520ae-3d6d-45bd-8432-fe15b935ee85 4cb803e3de73ea0d4b4e37cf55a1b5f1 { 'aliquot_tag': 'ALQ_33c9ea64', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L006' } +C3L-05815.RNA-Seq.transcriptome.Tpb.hg38 C3L-05815 AML RNA-Seq tumor_peripheral_blood CPT0323060002 1bce650c-da88-457d-af5a-7ee7767b8d81.rna_seq.transcriptome.gdc_realn.bam 7804805463 BAM transcriptome harmonized CPTAC3 99f87566-4890-4a1b-88ea-3d5cbcb0ed49 b2bd2099e21d4655250658608647296f { 'aliquot_tag': 'ALQ_33c9ea64', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05815.WGS.Nbc C3L-05815 AML WGS buccal_normal CPT0322970003 CPT0322970003.WholeGenome.RP-2158.bam 60729201718 BAM aligned CPTAC3 3325c4fd-7161-49bc-b40d-3e57f290ea99 72c37446e6ae829c50e1776cc4982fe3 { 'aliquot_tag': 'ALQ_f8d6a93e', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05815.WGS.Nbc.hg38 C3L-05815 AML WGS buccal_normal CPT0322970003 ed51575b-c7c0-4f8c-8e7b-50daa7bc08f8_wgs_gdc_realn.bam 180660261361 BAM harmonized CPTAC3 16782800-b974-449d-a904-63e0450305c1 b8c7c7968f792271eb16d5cf21ce7969 { 'aliquot_tag': 'ALQ_f8d6a93e', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05815.WGS.Tpb C3L-05815 AML WGS tumor_peripheral_blood CPT0323050002 CPT0323050002.WholeGenome.RP-2158.bam 50095177296 BAM aligned CPTAC3 c8d7964b-476d-40d8-96f7-8f45b216442c 529042f9ea2b018c118af81f882a71b6 { 'aliquot_tag': 'ALQ_746990b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05815.WGS.Tpb.hg38 C3L-05815 AML WGS tumor_peripheral_blood CPT0323050002 da70e406-4d9b-4969-85b4-6bdbfebb3baa_wgs_gdc_realn.bam 146047405514 BAM harmonized CPTAC3 92bcc4c9-4f9c-49e5-85bf-2f017b14c25a 13781d91b068ed906d13ab8a5a74fbac { 'aliquot_tag': 'ALQ_746990b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05815.WXS.Nbc C3L-05815 AML WXS buccal_normal CPT0322970003 CPT0322970003.WholeExome.RP-1303.bam 26668321021 BAM aligned CPTAC3 12a95782-f4de-4df2-bfcb-349da7cd00e2 68580918e1e1f92c8c718a4fc6e26bf7 { 'aliquot_tag': 'ALQ_f8d6a93e', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05815.WXS.Nbc.hg38 C3L-05815 AML WXS buccal_normal CPT0322970003 ed51575b-c7c0-4f8c-8e7b-50daa7bc08f8_wxs_gdc_realn.bam 36411951793 BAM harmonized CPTAC3 b71ca46d-887c-4f93-8d39-d29a490b62fa 7fba893f62c686a9ad0701b150169c09 { 'aliquot_tag': 'ALQ_f8d6a93e', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05815.WXS.Tpb C3L-05815 AML WXS tumor_peripheral_blood CPT0323050002 CPT0323050002.WholeExome.RP-1303.bam 23099077216 BAM aligned CPTAC3 0d787110-84e7-4214-9ddc-396ca32f6468 ee0f3e3fadd21c6c31e3db9e470f5d13 { 'aliquot_tag': 'ALQ_746990b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05816.RNA-Seq.R1_L008.Tpb C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 211207_UNC32-K00270_0305_AHMW37BBXY_GCAGAATT-ACCGGCCA_S31_L008_R1_001.fastq.gz 4019035536 FASTQ R1_L008 unaligned CPTAC3 6530a944-65a6-445f-acd2-40167a8ebabb 02ba8f009763cf67cf090b7bfcac1256 { 'aliquot_tag': 'ALQ_80d4bf69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05816.RNA-Seq.R2_L008.Tpb C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 211207_UNC32-K00270_0305_AHMW37BBXY_GCAGAATT-ACCGGCCA_S31_L008_R2_001.fastq.gz 4355051207 FASTQ R2_L008 unaligned CPTAC3 1a8aee28-cd05-4321-90b0-975466ae41ac ce088d5c01660b55ac473e507f310953 { 'aliquot_tag': 'ALQ_80d4bf69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05815.WXS.Tpb.hg38 C3L-05815 AML WXS tumor_peripheral_blood CPT0323050002 da70e406-4d9b-4969-85b4-6bdbfebb3baa_wxs_gdc_realn.bam 32032868839 BAM harmonized CPTAC3 09f05d78-9636-4c06-b153-babf5efa44b4 d844e657184dce433ecce94870f94b58 { 'aliquot_tag': 'ALQ_746990b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05816.MethArray.Green.Tpb C3L-05816 AML Methylation Array tumor_peripheral_blood CPT0341500002 205705520128_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9a88da23-fa5e-45cc-b541-348491b3eb8d dab69e3e3ae7f961ce69ad545c091e2a { 'aliquot_tag': 'ALQ_bdb496d9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05816.MethArray.Red.Tpb C3L-05816 AML Methylation Array tumor_peripheral_blood CPT0341500002 205705520128_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 8de997b4-9b46-4c3b-b19e-65bf0c644723 909f5ac53f6f879ee8e0ac162bfe0501 { 'aliquot_tag': 'ALQ_bdb496d9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05816.miRNA-Seq.Tpb C3L-05816 AML miRNA-Seq tumor_peripheral_blood CPT0341510002 220505_UNC32-K00270_0319_AHMV2KBBXY_CATTTT_S3_L003_R1_001.unaln.bam 262093107 BAM unaligned CPTAC3 0f68a5d3-ea29-4a60-8047-ccf9434bbd56 e3aa0e7fb5d9904eb0f8f5cb1ada390e { 'aliquot_tag': 'ALQ_80d4bf69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05816.RNA-Seq.chimeric.Tpb.hg38 C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 17fa4d85-7d8c-4762-91e2-4592669e1001.rna_seq.chimeric.gdc_realn.bam 702224929 BAM chimeric harmonized CPTAC3 cfd80439-539f-4540-8c1f-3c4b1d2abb4c ae7b7a1589f7279026afcb0557231c69 { 'aliquot_tag': 'ALQ_80d4bf69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05816.RNA-Seq.genomic.Tpb.hg38 C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 17fa4d85-7d8c-4762-91e2-4592669e1001.rna_seq.genomic.gdc_realn.bam 8646661750 BAM genomic harmonized CPTAC3 6c1c7b96-66ce-44be-81f1-cd3101d1c12e e664fede11b3311f4e917a5212ba12cf { 'aliquot_tag': 'ALQ_80d4bf69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05816.RNA-Seq.R1_L008.Tpb C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 211207_UNC32-K00270_0305_AHMW37BBXY_GCAGAATT-ACCGGCCA_S31_L008_R1_001.fastq.gz 4019035536 FASTQ R1_L008 unaligned CPTAC3 6530a944-65a6-445f-acd2-40167a8ebabb 02ba8f009763cf67cf090b7bfcac1256 { 'aliquot_tag': 'ALQ_80d4bf69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L008' } +C3L-05816.RNA-Seq.R2_L008.Tpb C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 211207_UNC32-K00270_0305_AHMW37BBXY_GCAGAATT-ACCGGCCA_S31_L008_R2_001.fastq.gz 4355051207 FASTQ R2_L008 unaligned CPTAC3 1a8aee28-cd05-4321-90b0-975466ae41ac ce088d5c01660b55ac473e507f310953 { 'aliquot_tag': 'ALQ_80d4bf69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L008' } +C3L-05816.RNA-Seq.transcriptome.Tpb.hg38 C3L-05816 AML RNA-Seq tumor_peripheral_blood CPT0341510002 17fa4d85-7d8c-4762-91e2-4592669e1001.rna_seq.transcriptome.gdc_realn.bam 6660362375 BAM transcriptome harmonized CPTAC3 919f846b-1423-4c5f-a07b-5b7220b17af7 9b332c840c7fa1053e417c2e5d60976e { 'aliquot_tag': 'ALQ_80d4bf69', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05816.WGS.Nbc C3L-05816 AML WGS buccal_normal CPT0341470002 CPT0341470002.WholeGenome.RP-2158.bam 46667120796 BAM aligned CPTAC3 db92010a-dec9-406d-a53b-13ba3defeba9 2951e0786295cd23d33d5207994f5df0 { 'aliquot_tag': 'ALQ_c4c8996c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05816.WGS.Nbc.hg38 C3L-05816 AML WGS buccal_normal CPT0341470002 77a1298b-2bc1-4de8-ad94-21cf8f17995e_wgs_gdc_realn.bam 145005729848 BAM harmonized CPTAC3 0cc98eed-522d-4c11-927f-456208e184d8 29783aa0f187ae8643924ad2f2d43c2c { 'aliquot_tag': 'ALQ_c4c8996c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05816.WGS.Tpb C3L-05816 AML WGS tumor_peripheral_blood CPT0341500002 CPT0341500002.WholeGenome.RP-2158.bam 41812881802 BAM aligned CPTAC3 ac39d56b-23e8-406e-939b-cbed41a6c19b 846b048d210d96f806f66f7229c11e12 { 'aliquot_tag': 'ALQ_bdb496d9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05816.WGS.Tpb.hg38 C3L-05816 AML WGS tumor_peripheral_blood CPT0341500002 b47d4df7-625d-4f96-a984-cc32fbfe3621_wgs_gdc_realn.bam 120323006253 BAM harmonized CPTAC3 56e0e868-c221-40e0-9757-a091ca137a68 d4b1b5240884ba6999a4ceb01587c2b9 { 'aliquot_tag': 'ALQ_bdb496d9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05816.WXS.Nbc C3L-05816 AML WXS buccal_normal CPT0341470002 CPT0341470002.WholeExome.RP-1303.bam 24084911537 BAM aligned CPTAC3 1393f6f9-47e2-4dbc-8894-d2d4e7928109 fa14485fb64d4f2a4f59c85a43bf4a25 { 'aliquot_tag': 'ALQ_c4c8996c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05816.WXS.Nbc.hg38 C3L-05816 AML WXS buccal_normal CPT0341470002 77a1298b-2bc1-4de8-ad94-21cf8f17995e_wxs_gdc_realn.bam 33138596326 BAM harmonized CPTAC3 d96c9dee-d6ca-4abe-b1f5-df582acb9a32 9545d471bed51e2ad14b757553fcd9a3 { 'aliquot_tag': 'ALQ_c4c8996c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05816.WXS.Tpb C3L-05816 AML WXS tumor_peripheral_blood CPT0341500002 CPT0341500002.WholeExome.RP-1303.bam 24840278431 BAM aligned CPTAC3 6497cdd6-a1ef-47e5-aa2d-f779538dbe82 c6fa1a1ed8c8bfda110d99a45c7d0698 { 'aliquot_tag': 'ALQ_bdb496d9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05816.WXS.Tpb.hg38 C3L-05816 AML WXS tumor_peripheral_blood CPT0341500002 b47d4df7-625d-4f96-a984-cc32fbfe3621_wxs_gdc_realn.bam 34293709629 BAM harmonized CPTAC3 66fbadaf-3853-46c1-8e14-0d1c6563d569 f7d2a995ecf516ae94389cd23a6e0936 { 'aliquot_tag': 'ALQ_bdb496d9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05818.MethArray.Green.Tpb C3L-05818 AML Methylation Array tumor_peripheral_blood CPT0341750002 205705520128_R02C01_Grn.idat 13677887 IDAT Green NA CPTAC3 1f307bad-454f-4f71-9d1f-25251429cf54 725309efd2ff674c5619829a5a010fd6 { 'aliquot_tag': 'ALQ_389cb8a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05818.MethArray.Red.Tpb C3L-05818 AML Methylation Array tumor_peripheral_blood CPT0341750002 205705520128_R02C01_Red.idat 13677887 IDAT Red NA CPTAC3 e6f73c43-6b89-409c-b500-58f7a55bb32e 30223600db520ce11a066362079bc637 { 'aliquot_tag': 'ALQ_389cb8a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05818.miRNA-Seq.Tpb C3L-05818 AML miRNA-Seq tumor_peripheral_blood CPT0341760002 220125_UNC32-K00270_0311_AHMNYYBBXY_GCCAAT_S35_L002_R1_001.unaln.bam 324966105 BAM unaligned CPTAC3 293d5ec7-fcf0-49e0-83f1-9ddd8d2dbe63 dc7c17fec4c72a834a9507e0a69a0170 { 'aliquot_tag': 'ALQ_7f3cc272', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05818.RNA-Seq.R1_L008.Tpb C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGAGGCC-GTTAATTG_S30_L008_R1_001.fastq.gz 4451676793 FASTQ R1_L008 unaligned CPTAC3 6692d0fd-d8c6-44be-8d98-642dd6a372be fe91152f48667f665256ed073c9a9674 { 'aliquot_tag': 'ALQ_7f3cc272', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05818.RNA-Seq.R2_L008.Tpb C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGAGGCC-GTTAATTG_S30_L008_R2_001.fastq.gz 4910816086 FASTQ R2_L008 unaligned CPTAC3 10684694-b8f8-4f79-9239-4b736dba2e74 33d5f83da157f18749256b07db2db30e { 'aliquot_tag': 'ALQ_7f3cc272', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05818.miRNA-Seq.Tpb.hg38 C3L-05818 AML miRNA-Seq tumor_peripheral_blood CPT0341760002 20769197-fd3e-4555-8505-8d306c84ec4c_mirnaseq_gdc_realn.bam 349602779 BAM harmonized CPTAC3 fbe96dbd-6212-4566-83bf-9208ca0ff7f4 e3c1a712158630dae3e1d5ca1dbc503c { 'aliquot_tag': 'ALQ_7f3cc272', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05818.RNA-Seq.chimeric.Tpb.hg38 C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 333abce0-6622-4c19-bdf3-3b44490c1b70.rna_seq.chimeric.gdc_realn.bam 921463062 BAM chimeric harmonized CPTAC3 1b374142-612f-497d-af94-4622106bc6c9 9545462b4d64956a5f00eb432e24e924 { 'aliquot_tag': 'ALQ_7f3cc272', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05818.RNA-Seq.genomic.Tpb.hg38 C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 333abce0-6622-4c19-bdf3-3b44490c1b70.rna_seq.genomic.gdc_realn.bam 9352436380 BAM genomic harmonized CPTAC3 f1e939d5-e92a-4648-947e-f0d153817fbc a742e4e1040ce40084913de8e1934979 { 'aliquot_tag': 'ALQ_7f3cc272', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05818.RNA-Seq.R1_L008.Tpb C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGAGGCC-GTTAATTG_S30_L008_R1_001.fastq.gz 4451676793 FASTQ R1_L008 unaligned CPTAC3 6692d0fd-d8c6-44be-8d98-642dd6a372be fe91152f48667f665256ed073c9a9674 { 'aliquot_tag': 'ALQ_7f3cc272', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L008' } +C3L-05818.RNA-Seq.R2_L008.Tpb C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 211207_UNC32-K00270_0305_AHMW37BBXY_ATGAGGCC-GTTAATTG_S30_L008_R2_001.fastq.gz 4910816086 FASTQ R2_L008 unaligned CPTAC3 10684694-b8f8-4f79-9239-4b736dba2e74 33d5f83da157f18749256b07db2db30e { 'aliquot_tag': 'ALQ_7f3cc272', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L008' } +C3L-05818.RNA-Seq.transcriptome.Tpb.hg38 C3L-05818 AML RNA-Seq tumor_peripheral_blood CPT0341760002 333abce0-6622-4c19-bdf3-3b44490c1b70.rna_seq.transcriptome.gdc_realn.bam 8860823205 BAM transcriptome harmonized CPTAC3 a6380a77-739b-4c13-9000-5800e70123e9 c30b67bdb3b7ad0a9d23581a05d979c2 { 'aliquot_tag': 'ALQ_7f3cc272', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05818.WGS.Nbc C3L-05818 AML WGS buccal_normal CPT0341720002 CPT0341720002.WholeGenome.RP-2158.bam 47674331431 BAM aligned CPTAC3 07d93477-605e-4142-9425-10c1fd3e75f7 216a7eb91c57038a8e8a82b770731ba8 { 'aliquot_tag': 'ALQ_8abc64b2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05818.WGS.Nbc.hg38 C3L-05818 AML WGS buccal_normal CPT0341720002 1ff08d8f-9a7d-4750-9dff-5d262627b6f1_wgs_gdc_realn.bam 142810189280 BAM harmonized CPTAC3 79f3bf76-08d2-40cc-a261-d303e5d51318 85735faee28b462d5369edd8b4fb7bda { 'aliquot_tag': 'ALQ_8abc64b2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05818.WGS.Tpb C3L-05818 AML WGS tumor_peripheral_blood CPT0341750002 CPT0341750002.WholeGenome.RP-2158.bam 52201548894 BAM aligned CPTAC3 8aec49e1-b072-4d89-8642-caf602f4aea0 a63e8e5917fb0599bb570b6e0da2dabe { 'aliquot_tag': 'ALQ_389cb8a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05818.WGS.Tpb.hg38 C3L-05818 AML WGS tumor_peripheral_blood CPT0341750002 f3ee205a-e3ac-4a98-a28b-bcb74a8a01fc_wgs_gdc_realn.bam 159950743711 BAM harmonized CPTAC3 33763a8a-1d39-4242-a314-022ebf386cde 1c496d0ff879c0e4fd7f1c80064bc363 { 'aliquot_tag': 'ALQ_389cb8a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05818.WXS.Nbc C3L-05818 AML WXS buccal_normal CPT0341720002 CPT0341720002.WholeExome.RP-1303.bam 30048890719 BAM aligned CPTAC3 9cb033f9-5dd8-4992-94db-9dc6e6267e2c 3e7303f2ad4cf16ee61605185b50b035 { 'aliquot_tag': 'ALQ_8abc64b2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05818.WXS.Nbc.hg38 C3L-05818 AML WXS buccal_normal CPT0341720002 1ff08d8f-9a7d-4750-9dff-5d262627b6f1_wxs_gdc_realn.bam 41111750919 BAM harmonized CPTAC3 5730c453-4048-4c9e-b10a-06c63400babf f26ef93daab0b4c85ed37cbb9f0a797a { 'aliquot_tag': 'ALQ_8abc64b2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05818.WXS.Tpb C3L-05818 AML WXS tumor_peripheral_blood CPT0341750002 CPT0341750002.WholeExome.RP-1303.bam 22320744456 BAM aligned CPTAC3 2d23e5e3-1101-4bd3-a656-899cecad8808 4c2a3c64f96c808b29fbfc9fb464d658 { 'aliquot_tag': 'ALQ_389cb8a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05818.WXS.Tpb.hg38 C3L-05818 AML WXS tumor_peripheral_blood CPT0341750002 f3ee205a-e3ac-4a98-a28b-bcb74a8a01fc_wxs_gdc_realn.bam 30807850895 BAM harmonized CPTAC3 805544ba-b2c2-4025-acae-b1a7a6c4110f 9e659890c0ae82154d6768f852212eaf { 'aliquot_tag': 'ALQ_389cb8a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05819.MethArray.Green.Tpb C3L-05819 AML Methylation Array tumor_peripheral_blood CPT0341900002 205987780101_R08C01_Grn.idat 13677890 IDAT Green NA CPTAC3 40d53142-6124-4deb-b37a-8475a419b29d b959d3f876ebc10cc11b898b4acb6c27 { 'aliquot_tag': 'ALQ_ca7656a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05819.MethArray.Red.Tpb C3L-05819 AML Methylation Array tumor_peripheral_blood CPT0341900002 205987780101_R08C01_Red.idat 13677890 IDAT Red NA CPTAC3 474cb2d4-6e3d-43e7-96aa-13325b2b4149 c4eb458864a903fce92ccc53d17206b6 { 'aliquot_tag': 'ALQ_ca7656a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05819.miRNA-Seq.Tpb C3L-05819 AML miRNA-Seq tumor_peripheral_blood CPT0341910002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAGATC_S29_L002_R1_001.unaln.bam 208343040 BAM unaligned CPTAC3 4f1e8895-5758-45a8-ad68-e1d6039c2b9a bc1455f13905769d664c4466ac3fc45e { 'aliquot_tag': 'ALQ_f7167f12', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05819.RNA-Seq.R1_L001.Tpb C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACTAAGAT-AACCGCGG_S1_L001_R1_001.fastq.gz 4611330437 FASTQ R1_L001 unaligned CPTAC3 66199b6f-b71a-40a8-94a5-abbdb0b4af76 01a15df3a1b69127a78b5947ce42359c { 'aliquot_tag': 'ALQ_f7167f12', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05819.RNA-Seq.R2_L001.Tpb C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACTAAGAT-AACCGCGG_S1_L001_R2_001.fastq.gz 5054971938 FASTQ R2_L001 unaligned CPTAC3 205ac3a6-e412-4af0-9756-1e35ba0fd4b3 57f749dc6f7a37f37992722ff83ac726 { 'aliquot_tag': 'ALQ_f7167f12', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05819.miRNA-Seq.Tpb.hg38 C3L-05819 AML miRNA-Seq tumor_peripheral_blood CPT0341910002 054f8a59-382c-4303-95f9-f405c58a0dae_mirnaseq_gdc_realn.bam 226042666 BAM harmonized CPTAC3 44a324d3-5e63-4861-a9e1-5fa537fb54f5 3783d31e665277b6b16248632a9a1ad3 { 'aliquot_tag': 'ALQ_f7167f12', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05819.RNA-Seq.chimeric.Tpb.hg38 C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 8eb700b5-f3af-4b62-ac85-34ea65eef075.rna_seq.chimeric.gdc_realn.bam 911622814 BAM chimeric harmonized CPTAC3 b1e3a119-d2c8-4a1f-a521-575d98a72675 5bbe0e2453b5c59f82399c22c840a9fe { 'aliquot_tag': 'ALQ_f7167f12', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05819.RNA-Seq.genomic.Tpb.hg38 C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 8eb700b5-f3af-4b62-ac85-34ea65eef075.rna_seq.genomic.gdc_realn.bam 9245352947 BAM genomic harmonized CPTAC3 7602646f-ab8e-410c-8db2-27ebda35c5e9 4a70d5d7491027d9c5be1d50074e89d7 { 'aliquot_tag': 'ALQ_f7167f12', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05819.RNA-Seq.R1_L001.Tpb C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACTAAGAT-AACCGCGG_S1_L001_R1_001.fastq.gz 4611330437 FASTQ R1_L001 unaligned CPTAC3 66199b6f-b71a-40a8-94a5-abbdb0b4af76 01a15df3a1b69127a78b5947ce42359c { 'aliquot_tag': 'ALQ_f7167f12', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L001' } +C3L-05819.RNA-Seq.R2_L001.Tpb C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACTAAGAT-AACCGCGG_S1_L001_R2_001.fastq.gz 5054971938 FASTQ R2_L001 unaligned CPTAC3 205ac3a6-e412-4af0-9756-1e35ba0fd4b3 57f749dc6f7a37f37992722ff83ac726 { 'aliquot_tag': 'ALQ_f7167f12', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L001' } +C3L-05819.RNA-Seq.transcriptome.Tpb.hg38 C3L-05819 AML RNA-Seq tumor_peripheral_blood CPT0341910002 8eb700b5-f3af-4b62-ac85-34ea65eef075.rna_seq.transcriptome.gdc_realn.bam 10087739230 BAM transcriptome harmonized CPTAC3 f9028cb1-8041-4cbf-bffd-3abfdec79d64 fa3f6caa06b0186a395c989abc2105fe { 'aliquot_tag': 'ALQ_f7167f12', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05819.WGS.Nbc C3L-05819 AML WGS buccal_normal CPT0341870002 CPT0341870002.WholeGenome.RP-2158.bam 46715691034 BAM aligned CPTAC3 cadb58ae-ec45-4a24-9111-ca8fc6c5d70a b93649db1fddc5691a25d8e8014358a7 { 'aliquot_tag': 'ALQ_b30a5917', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05819.WGS.Nbc.hg38 C3L-05819 AML WGS buccal_normal CPT0341870002 2a73ba4a-220b-4987-b302-4e381bb8e4ec_wgs_gdc_realn.bam 137880656738 BAM harmonized CPTAC3 08e4d192-7b7d-4f5a-859f-7a804bca3ddf 3d3fe7b32d619d8f9b037e921a132a8a { 'aliquot_tag': 'ALQ_b30a5917', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05819.WGS.Tpb C3L-05819 AML WGS tumor_peripheral_blood CPT0341900002 CPT0341900002.WholeGenome.RP-2158.bam 43495843547 BAM aligned CPTAC3 091cea99-fd2c-40d6-bc4b-c79347052637 93a4d65725d0431e4e787453b5a46aec { 'aliquot_tag': 'ALQ_ca7656a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05819.WGS.Tpb.hg38 C3L-05819 AML WGS tumor_peripheral_blood CPT0341900002 0b13de88-15b7-460b-b48c-42918beb19ab_wgs_gdc_realn.bam 383286033134 BAM harmonized CPTAC3 c395cc56-30a7-4f7d-9a6c-33b84e36f2fc 06a024c709157b07ebac97dc2c816daa { 'aliquot_tag': 'ALQ_ca7656a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05819.WXS.Nbc C3L-05819 AML WXS buccal_normal CPT0341870002 CPT0341870002.WholeExome.RP-1303.bam 24953011849 BAM aligned CPTAC3 ce39e506-73dc-4f0c-b98d-bf42ebdeaa36 1b0773dea3c285af0a9c267705a2f4d1 { 'aliquot_tag': 'ALQ_b30a5917', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05819.WXS.Nbc.hg38 C3L-05819 AML WXS buccal_normal CPT0341870002 2a73ba4a-220b-4987-b302-4e381bb8e4ec_wxs_gdc_realn.bam 34395335551 BAM harmonized CPTAC3 08a8f112-a896-4435-bec0-4f7c3081d5c3 dfd5017f4273c810ea93f63b328c376c { 'aliquot_tag': 'ALQ_b30a5917', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05819.WXS.Tpb C3L-05819 AML WXS tumor_peripheral_blood CPT0341900002 CPT0341900002.WholeExome.RP-1303.bam 23019547119 BAM aligned CPTAC3 43ffbea2-a345-48ac-9b95-8105e9d69436 f0038c5a840d765dd3faeaed879ec71c { 'aliquot_tag': 'ALQ_ca7656a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05819.WXS.Tpb.hg38 C3L-05819 AML WXS tumor_peripheral_blood CPT0341900002 0b13de88-15b7-460b-b48c-42918beb19ab_wxs_gdc_realn.bam 32072259434 BAM harmonized CPTAC3 09d2c250-7d1b-4ce1-b341-f22b344cc4ec f4165b21c964967c75dc31859b3a1bf5 { 'aliquot_tag': 'ALQ_ca7656a2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05848.MethArray.Green.T C3L-05848 UCEC Methylation Array tumor CPT0288750009 204372030106_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0a065a8b-c02c-4b0b-b6a3-4e251a8c4ad4 9558bde51f725c60484b03d5cdb0df62 { 'aliquot_tag': 'ALQ_7a0225f5', 'gdc_sample_type': 'Primary Tumor' } C3L-05848.MethArray.Red.T C3L-05848 UCEC Methylation Array tumor CPT0288750009 204372030106_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 b4c3d582-0793-4f9b-9ec4-897dba398e85 03be4c8aed9fac92cb60fb38ecf9d196 { 'aliquot_tag': 'ALQ_7a0225f5', 'gdc_sample_type': 'Primary Tumor' } C3L-05848.miRNA-Seq.T C3L-05848 UCEC miRNA-Seq tumor CPT0288750006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TAATCG_S42_L008_R1_001.unaln.bam 194402343 BAM unaligned CPTAC3 eb251cc7-d9e3-4755-b1d5-f71ef8dbde73 1affa8e420f5b522ac6a6e461f39cff8 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor' } C3L-05848.miRNA-Seq.T.hg38 C3L-05848 UCEC miRNA-Seq tumor CPT0288750006 ac7e0cd3-76ef-4112-b477-b55de7dfbf35_mirnaseq_gdc_realn.bam 211461102 BAM harmonized CPTAC3 bf128935-81ed-4151-9e03-b97d6b46d5ed 843570f4183035b0cc87774adb9e44bc { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor' } -C3L-05848.RNA-Seq.chimeric.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 66dcd02a-2248-43ca-aa87-2b45e41194a1.rna_seq.chimeric.gdc_realn.bam 37740884 BAM chimeric harmonized CPTAC3 5c0856d1-4781-445f-a59c-cf2468e3323b 1a2e934529c4598377220cf7cd462506 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor' } -C3L-05848.RNA-Seq.genomic.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 66dcd02a-2248-43ca-aa87-2b45e41194a1.rna_seq.genomic.gdc_realn.bam 9753370967 BAM genomic harmonized CPTAC3 0ff03c4d-4b3e-4e1e-b23e-1aba1119920f 4a13b6ce9b13f904f1ce921a6d6b5621 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor' } -C3L-05848.RNA-Seq.R1_L007.T C3L-05848 UCEC RNA-Seq tumor CPT0288750006 200218_UNC31-K00269_0266_AHGKHKBBXY_TGCGGCGT-CCTCGGTA_S61_L007_R1_001.fastq.gz 4848554227 FASTQ R1_L007 unaligned CPTAC3 a20970a5-0b49-4d46-b295-01241bc3bddf 0828dbbb1aab50ffe8838d8ead7e1ac5 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor' } -C3L-05848.RNA-Seq.R1_.T C3L-05848 UCEC RNA-Seq tumor CPT0288760001 20210723_P2_G4_WB7988-plate2_S76_R1_001.fastq.gz 6042484243 FASTQ R1_ unaligned CPTAC3 67f23630-5f13-40c2-be70-6a06108da2b8 1153b31a563449e62db0c14bfde5ac66 { 'aliquot_tag': 'ALQ_3379d717', 'gdc_sample_type': 'Primary Tumor' } -C3L-05848.RNA-Seq.R2_L007.T C3L-05848 UCEC RNA-Seq tumor CPT0288750006 200218_UNC31-K00269_0266_AHGKHKBBXY_TGCGGCGT-CCTCGGTA_S61_L007_R2_001.fastq.gz 5280894738 FASTQ R2_L007 unaligned CPTAC3 a1e74ea4-3a49-425b-9958-e27affeb1742 5069041bffd07e6f5237160e69784be1 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor' } -C3L-05848.RNA-Seq.R2_.T C3L-05848 UCEC RNA-Seq tumor CPT0288760001 20210723_P2_G4_WB7988-plate2_S76_R2_001.fastq.gz 6285981923 FASTQ R2_ unaligned CPTAC3 c81c503d-88b0-4dbf-acbd-14d2c990ae0d 59593c04495adcd7251503e84062feae { 'aliquot_tag': 'ALQ_3379d717', 'gdc_sample_type': 'Primary Tumor' } -C3L-05848.RNA-Seq.transcriptome.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 66dcd02a-2248-43ca-aa87-2b45e41194a1.rna_seq.transcriptome.gdc_realn.bam 10127362657 BAM transcriptome harmonized CPTAC3 0dd4c04d-2e88-4a81-af33-7f44cf76d6cd 82107dc95be249881d18136a87e69578 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor' } +C3L-05848.RNA-Seq.chimeric.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 2f49e8df-2dc4-43d0-b01e-7803dd26e743.rna_seq.chimeric.gdc_realn.bam 37726313 BAM chimeric harmonized CPTAC3 f483a0c3-de96-45cd-a9ea-7953623f902b 760916b6ba281ae41b05272b6025e2e8 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor' } +C3L-05848.RNA-Seq.chimeric.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288760001 60cc1457-a642-4182-a4cf-7b266355d220.rna_seq.chimeric.gdc_realn.bam 226405297 BAM chimeric harmonized CPTAC3 e4c4926a-2aba-4524-9d5c-a02bcf8910b7 f3867521443870465c4a7c2f23d60efc { 'aliquot_tag': 'ALQ_3379d717', 'gdc_sample_type': 'Primary Tumor' } +C3L-05848.RNA-Seq.genomic.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 2f49e8df-2dc4-43d0-b01e-7803dd26e743.rna_seq.genomic.gdc_realn.bam 9754759588 BAM genomic harmonized CPTAC3 25072bd1-ed94-4ba4-a5cb-08578c8fe1ed a06a8e6656f397d1b3522e840a4a3a91 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor' } +C3L-05848.RNA-Seq.genomic.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288760001 60cc1457-a642-4182-a4cf-7b266355d220.rna_seq.genomic.gdc_realn.bam 11537591794 BAM genomic harmonized CPTAC3 c50b9c49-58ca-4dbb-8e76-9911e8c53aac 78611fe61649ebd35171e57b50d25e73 { 'aliquot_tag': 'ALQ_3379d717', 'gdc_sample_type': 'Primary Tumor' } +C3L-05848.RNA-Seq.R1_L007.T C3L-05848 UCEC RNA-Seq tumor CPT0288750006 200218_UNC31-K00269_0266_AHGKHKBBXY_TGCGGCGT-CCTCGGTA_S61_L007_R1_001.fastq.gz 4848554227 FASTQ R1_L007 unaligned CPTAC3 a20970a5-0b49-4d46-b295-01241bc3bddf 0828dbbb1aab50ffe8838d8ead7e1ac5 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-05848.RNA-Seq.R2_L007.T C3L-05848 UCEC RNA-Seq tumor CPT0288750006 200218_UNC31-K00269_0266_AHGKHKBBXY_TGCGGCGT-CCTCGGTA_S61_L007_R2_001.fastq.gz 5280894738 FASTQ R2_L007 unaligned CPTAC3 a1e74ea4-3a49-425b-9958-e27affeb1742 5069041bffd07e6f5237160e69784be1 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-05848.RNA-Seq.T C3L-05848 UCEC RNA-Seq tumor CPT0288760001 20210723_P2_G4_WB7988-plate2_S76_R1_001.fastq.gz 6042484243 FASTQ unaligned CPTAC3 67f23630-5f13-40c2-be70-6a06108da2b8 1153b31a563449e62db0c14bfde5ac66 +C3L-05848.RNA-Seq.T C3L-05848 UCEC RNA-Seq tumor CPT0288760001 20210723_P2_G4_WB7988-plate2_S76_R2_001.fastq.gz 6285981923 FASTQ unaligned CPTAC3 c81c503d-88b0-4dbf-acbd-14d2c990ae0d 59593c04495adcd7251503e84062feae +C3L-05848.RNA-Seq.transcriptome.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288750006 2f49e8df-2dc4-43d0-b01e-7803dd26e743.rna_seq.transcriptome.gdc_realn.bam 11540069244 BAM transcriptome harmonized CPTAC3 909d20ce-8f5b-443a-a13c-c84439bfa734 aafd0718c5e4fa59efdd34c5ec5adf61 { 'aliquot_tag': 'ALQ_eabd3864', 'gdc_sample_type': 'Primary Tumor' } +C3L-05848.RNA-Seq.transcriptome.T.hg38 C3L-05848 UCEC RNA-Seq tumor CPT0288760001 60cc1457-a642-4182-a4cf-7b266355d220.rna_seq.transcriptome.gdc_realn.bam 5772694903 BAM transcriptome harmonized CPTAC3 2d8da558-6f7d-4c91-91f8-427b235d8ba5 4d508a820d2311a95a76984bc496991f { 'aliquot_tag': 'ALQ_3379d717', 'gdc_sample_type': 'Primary Tumor' } C3L-05848.WGS.N C3L-05848 UCEC WGS blood_normal CPT0297030002 CPT0297030002.WholeGenome.RP-2158.bam 22123037304 BAM aligned CPTAC3 c46afebd-b2b5-4bd2-a465-59767618650c 3e4c03af9aef5dabc6070fd964d2c386 { 'aliquot_tag': 'ALQ_45774912', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05848.WGS.N.hg38 C3L-05848 UCEC WGS blood_normal CPT0297030002 7d7cb0ec-0300-463a-bf17-b3b5126d3cba_wgs_gdc_realn.bam 64633587295 BAM harmonized CPTAC3 b9d8dbc3-28d5-4a81-99c1-88246d743f56 9ac5302cfb94d79f29658c872cbcfc7f { 'aliquot_tag': 'ALQ_45774912', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05848.WGS.T C3L-05848 UCEC WGS tumor CPT0288750009 CPT0288750009.WholeGenome.RP-2158.bam 25131159601 BAM aligned CPTAC3 e2914989-c6d8-44cf-8d69-6d01e9e1ad7b c2e022413d75838d5cf0dc479ca86ad7 { 'aliquot_tag': 'ALQ_7a0225f5', 'gdc_sample_type': 'Primary Tumor' } @@ -17722,13 +18897,16 @@ C3L-05849.MethArray.Green.T C3L-05849 UCEC Methylation Array tumor CPT0288830009 C3L-05849.MethArray.Red.T C3L-05849 UCEC Methylation Array tumor CPT0288830009 204372030013_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 7192561d-dbe3-42f3-86e5-7a2079f29616 e62f8478b6d4cb9f0dce0b4f46f42491 { 'aliquot_tag': 'ALQ_4146280', 'gdc_sample_type': 'Primary Tumor' } C3L-05849.miRNA-Seq.T C3L-05849 UCEC miRNA-Seq tumor CPT0288830006 200513_UNC31-K00269_0278_BHH7Y7BBXY_TACAGC_S43_L008_R1_001.unaln.bam 257617056 BAM unaligned CPTAC3 12b38f1a-5c62-444b-a4fe-9275a44fdb56 8eca96a665344db3d776b693485a9a99 { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor' } C3L-05849.miRNA-Seq.T.hg38 C3L-05849 UCEC miRNA-Seq tumor CPT0288830006 60d14046-a220-448e-9ae8-76ae2a990969_mirnaseq_gdc_realn.bam 280378364 BAM harmonized CPTAC3 bb8b77d2-9651-4f5e-a987-8e8fc9881125 794e2e8ef51c963582e2ddd5e0551756 { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor' } -C3L-05849.RNA-Seq.chimeric.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 d8f33a37-f4c3-4685-9448-959351ef2d9e.rna_seq.chimeric.gdc_realn.bam 27055851 BAM chimeric harmonized CPTAC3 d40e34fd-5564-4fd3-8133-7373ab15d3f3 66ac6327bef23b193b4d1f99225ded01 { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor' } -C3L-05849.RNA-Seq.genomic.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 d8f33a37-f4c3-4685-9448-959351ef2d9e.rna_seq.genomic.gdc_realn.bam 7230634706 BAM genomic harmonized CPTAC3 d788cc53-88e8-493a-8eb4-dd00d114da70 c4ad231dd61f1669086d8c062cd746b3 { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor' } -C3L-05849.RNA-Seq.R1_L007.T C3L-05849 UCEC RNA-Seq tumor CPT0288830006 200218_UNC31-K00269_0266_AHGKHKBBXY_CATAATAC-TTCTAACG_S62_L007_R1_001.fastq.gz 3516758807 FASTQ R1_L007 unaligned CPTAC3 df1c6490-5106-4e02-945a-118b9cef06fb ad456ac0f22fa90061f3a38d3c26ce11 { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor' } -C3L-05849.RNA-Seq.R1_.T C3L-05849 UCEC RNA-Seq tumor CPT0288840001 20210723_P2_A10_WB7988-plate2_S10_R1_001.fastq.gz 10346834136 FASTQ R1_ unaligned CPTAC3 51333577-b0d4-4b8d-b702-385e168932cf d02b2b75fec7dc619a3e17585f784350 { 'aliquot_tag': 'ALQ_b8ef36a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-05849.RNA-Seq.R2_L007.T C3L-05849 UCEC RNA-Seq tumor CPT0288830006 200218_UNC31-K00269_0266_AHGKHKBBXY_CATAATAC-TTCTAACG_S62_L007_R2_001.fastq.gz 3754319312 FASTQ R2_L007 unaligned CPTAC3 5fc90fb6-c5e7-4c8f-b9b0-1f19f87f64d9 0d37912ac646333a2821ffba59e4dce8 { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor' } -C3L-05849.RNA-Seq.R2_.T C3L-05849 UCEC RNA-Seq tumor CPT0288840001 20210723_P2_A10_WB7988-plate2_S10_R2_001.fastq.gz 10578480756 FASTQ R2_ unaligned CPTAC3 efa680fe-8c6d-4c23-90d6-36694fce63a4 16ab50bf8bb22dee65a57b6c21628879 { 'aliquot_tag': 'ALQ_b8ef36a2', 'gdc_sample_type': 'Primary Tumor' } -C3L-05849.RNA-Seq.transcriptome.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 d8f33a37-f4c3-4685-9448-959351ef2d9e.rna_seq.transcriptome.gdc_realn.bam 7557200472 BAM transcriptome harmonized CPTAC3 f050270b-cb94-44a7-ac52-71f8fb8b7974 bf12f4cc93061d280b87b157e300b2c1 { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor' } +C3L-05849.RNA-Seq.chimeric.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 7f812191-3424-42f2-9276-3c4901557f1f.rna_seq.chimeric.gdc_realn.bam 27044589 BAM chimeric harmonized CPTAC3 e48efae0-bf52-438d-9cb4-eb7c44422b30 0b5a1d5aa8979e9693a564c3b528f8d8 { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor' } +C3L-05849.RNA-Seq.chimeric.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288840001 53af19f4-12d5-44c2-88d4-405ac04b8771.rna_seq.chimeric.gdc_realn.bam 329121970 BAM chimeric harmonized CPTAC3 84f9fcac-dcca-4b82-99f8-62089c66bb08 9d8eacaf569ee2c31a5840bd276245f3 { 'aliquot_tag': 'ALQ_b8ef36a2', 'gdc_sample_type': 'Primary Tumor' } +C3L-05849.RNA-Seq.genomic.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 7f812191-3424-42f2-9276-3c4901557f1f.rna_seq.genomic.gdc_realn.bam 7231940242 BAM genomic harmonized CPTAC3 89104d1c-b108-4b3c-899a-2ca382be6627 fa1a99b91d7175497b8383ae96bd540b { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor' } +C3L-05849.RNA-Seq.genomic.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288840001 53af19f4-12d5-44c2-88d4-405ac04b8771.rna_seq.genomic.gdc_realn.bam 17333365278 BAM genomic harmonized CPTAC3 c355cfb3-282a-49c3-a1f4-fa30ea2d4d76 a8dd8183bcdebb141e02ab15c5d9290f { 'aliquot_tag': 'ALQ_b8ef36a2', 'gdc_sample_type': 'Primary Tumor' } +C3L-05849.RNA-Seq.R1_L007.T C3L-05849 UCEC RNA-Seq tumor CPT0288830006 200218_UNC31-K00269_0266_AHGKHKBBXY_CATAATAC-TTCTAACG_S62_L007_R1_001.fastq.gz 3516758807 FASTQ R1_L007 unaligned CPTAC3 df1c6490-5106-4e02-945a-118b9cef06fb ad456ac0f22fa90061f3a38d3c26ce11 { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-05849.RNA-Seq.R2_L007.T C3L-05849 UCEC RNA-Seq tumor CPT0288830006 200218_UNC31-K00269_0266_AHGKHKBBXY_CATAATAC-TTCTAACG_S62_L007_R2_001.fastq.gz 3754319312 FASTQ R2_L007 unaligned CPTAC3 5fc90fb6-c5e7-4c8f-b9b0-1f19f87f64d9 0d37912ac646333a2821ffba59e4dce8 { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-05849.RNA-Seq.T C3L-05849 UCEC RNA-Seq tumor CPT0288840001 20210723_P2_A10_WB7988-plate2_S10_R1_001.fastq.gz 10346834136 FASTQ unaligned CPTAC3 51333577-b0d4-4b8d-b702-385e168932cf d02b2b75fec7dc619a3e17585f784350 +C3L-05849.RNA-Seq.T C3L-05849 UCEC RNA-Seq tumor CPT0288840001 20210723_P2_A10_WB7988-plate2_S10_R2_001.fastq.gz 10578480756 FASTQ unaligned CPTAC3 efa680fe-8c6d-4c23-90d6-36694fce63a4 16ab50bf8bb22dee65a57b6c21628879 +C3L-05849.RNA-Seq.transcriptome.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288830006 7f812191-3424-42f2-9276-3c4901557f1f.rna_seq.transcriptome.gdc_realn.bam 8627517266 BAM transcriptome harmonized CPTAC3 1260dace-8a81-4817-b9d1-315c05b53a31 5459812ad9b4ad1ec3a9c59f50732bdf { 'aliquot_tag': 'ALQ_94ab7f11', 'gdc_sample_type': 'Primary Tumor' } +C3L-05849.RNA-Seq.transcriptome.T.hg38 C3L-05849 UCEC RNA-Seq tumor CPT0288840001 53af19f4-12d5-44c2-88d4-405ac04b8771.rna_seq.transcriptome.gdc_realn.bam 10532517647 BAM transcriptome harmonized CPTAC3 8fd56d1d-2efd-426d-8c9a-0c159a7f5d6e a746fb437ba8044538e3a45877efcf88 { 'aliquot_tag': 'ALQ_b8ef36a2', 'gdc_sample_type': 'Primary Tumor' } C3L-05849.WGS.N C3L-05849 UCEC WGS blood_normal CPT0297010002 CPT0297010002.WholeGenome.RP-2158.bam 19678690999 BAM aligned CPTAC3 38a9d269-957d-4464-8438-72bcdf6f7846 47e36248c26a55d353b8cac4283feb75 { 'aliquot_tag': 'ALQ_3fb71a72', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05849.WGS.N.hg38 C3L-05849 UCEC WGS blood_normal CPT0297010002 138f530d-492b-4fc7-aba2-be1c9dc10174_wgs_gdc_realn.bam 54235420135 BAM harmonized CPTAC3 5aa3512e-d383-486a-ac23-d66db53f7388 44958cf06ffb92f5c819829a67b68e2d { 'aliquot_tag': 'ALQ_3fb71a72', 'gdc_sample_type': 'Blood Derived Normal' } C3L-05849.WGS.T C3L-05849 UCEC WGS tumor CPT0288830009 CPT0288830009.WholeGenome.RP-2158.bam 23824195874 BAM aligned CPTAC3 195a1036-7fd1-4656-9b77-db40e0e725c8 4f86a0916f55c9bb9c42d0326d48b166 { 'aliquot_tag': 'ALQ_4146280', 'gdc_sample_type': 'Primary Tumor' } @@ -17740,385 +18918,650 @@ C3L-05849.WXS.T.hg38 C3L-05849 UCEC WXS tumor CPT0288830009 6966a7ce-9a95-4aa0-a C3L-05861.MethArray.Green.Tbm C3L-05861 AML Methylation Array tumor_bone_marrow CPT0307200002 205555380130_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ad0aaf0e-55d4-41a8-82a8-228218d25af3 e90b96d5c49cc7cbba8a06f219b0041b { 'aliquot_tag': 'ALQ_472b9da1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05861.MethArray.Red.Tbm C3L-05861 AML Methylation Array tumor_bone_marrow CPT0307200002 205555380130_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 d84754a8-9c68-45af-8cae-a6ca64806cbe 03b565395667ddbe0740c782e6b4e0c5 { 'aliquot_tag': 'ALQ_472b9da1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05861.miRNA-Seq.Tbm C3L-05861 AML miRNA-Seq tumor_bone_marrow CPT0307210002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATGTCA_S6_L001_R1_001.unaln.bam 311283102 BAM unaligned CPTAC3 289717ca-9254-4530-b0f1-fa7acf024570 997dc363ce2a56b6d4728498269f5040 { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05861.RNA-Seq.chimeric.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 e23fe7e8-cc5d-4bf2-9716-d8e5ba56e330.rna_seq.chimeric.gdc_realn.bam 647999052 BAM chimeric harmonized CPTAC3 6eed3ddb-e965-4a9e-995c-5b6694b97385 3fdc7ed8a9fb9b163c23c3493d685454 { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05861.RNA-Seq.genomic.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 e23fe7e8-cc5d-4bf2-9716-d8e5ba56e330.rna_seq.genomic.gdc_realn.bam 5922295481 BAM genomic harmonized CPTAC3 84829fb8-0aa9-41ee-b68e-7629113393a4 9afcd4057f2711161cf3d4aa926e8c32 { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05861.RNA-Seq.R1_L005.Tbm C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 210319_UNC31-K00269_0296_AHKT37BBXY_TTGCCTAG-ACCACTTA_S20_L005_R1_001.fastq.gz 3187800828 FASTQ R1_L005 unaligned CPTAC3 074fab94-27aa-444e-b8c4-f06a6f3cdf3d 20c63a274eefbfb36bde2f2f2a5c0a7c { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05861.RNA-Seq.R2_L005.Tbm C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 210319_UNC31-K00269_0296_AHKT37BBXY_TTGCCTAG-ACCACTTA_S20_L005_R2_001.fastq.gz 3400819138 FASTQ R2_L005 unaligned CPTAC3 a95b940a-0080-4dab-9c33-14af4ecce0ec 7309dcbc031b62270976b5f3250161a0 { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05861.RNA-Seq.transcriptome.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 e23fe7e8-cc5d-4bf2-9716-d8e5ba56e330.rna_seq.transcriptome.gdc_realn.bam 4852408897 BAM transcriptome harmonized CPTAC3 5d391cd2-b8fc-4d4d-a371-dc56ee6ac60d 01ab47da0ec6d32ee124abe9bea0fdb9 { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05861.miRNA-Seq.Tbm.hg38 C3L-05861 AML miRNA-Seq tumor_bone_marrow CPT0307210002 45aa211d-ff02-4bd8-b7dd-ccb2c21843ba_mirnaseq_gdc_realn.bam 333579558 BAM harmonized CPTAC3 13aed3ca-56bc-420e-97eb-4a1a26be0586 60374fb14caf0bea7939c3858582688e { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05861.RNA-Seq.chimeric.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 390da224-63fd-4731-8ed1-72e6295ebc78.rna_seq.chimeric.gdc_realn.bam 648535958 BAM chimeric harmonized CPTAC3 1dec8005-7a84-4c48-8d1b-f22811963836 74dabef2bdb633d7475efc4ca05f2012 { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05861.RNA-Seq.genomic.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 390da224-63fd-4731-8ed1-72e6295ebc78.rna_seq.genomic.gdc_realn.bam 5927287767 BAM genomic harmonized CPTAC3 1107bdb6-dcd6-4339-bcd4-8e4565eae87f cb12838755aee2660cfe70b0a964f966 { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05861.RNA-Seq.R1_L005.Tbm C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 210319_UNC31-K00269_0296_AHKT37BBXY_TTGCCTAG-ACCACTTA_S20_L005_R1_001.fastq.gz 3187800828 FASTQ R1_L005 unaligned CPTAC3 074fab94-27aa-444e-b8c4-f06a6f3cdf3d 20c63a274eefbfb36bde2f2f2a5c0a7c { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-05861.RNA-Seq.R2_L005.Tbm C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 210319_UNC31-K00269_0296_AHKT37BBXY_TTGCCTAG-ACCACTTA_S20_L005_R2_001.fastq.gz 3400819138 FASTQ R2_L005 unaligned CPTAC3 a95b940a-0080-4dab-9c33-14af4ecce0ec 7309dcbc031b62270976b5f3250161a0 { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-05861.RNA-Seq.transcriptome.Tbm.hg38 C3L-05861 AML RNA-Seq tumor_bone_marrow CPT0307210002 390da224-63fd-4731-8ed1-72e6295ebc78.rna_seq.transcriptome.gdc_realn.bam 5543390834 BAM transcriptome harmonized CPTAC3 7aa9f6da-860c-47fe-9d49-48ad1251cb16 fd8039f365a9cb51c0026790d80a556d { 'aliquot_tag': 'ALQ_7a4bb411', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05861.WGS.Nbc C3L-05861 AML WGS buccal_normal CPT0307170003 CPT0307170003.WholeGenome.RP-2158.bam 44663044645 BAM aligned CPTAC3 7cd431da-14c5-41df-9d2a-c29a40a8209b ab7f61a4eb2f386a6e2b798cf2a0cf14 { 'aliquot_tag': 'ALQ_4980389', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05861.WGS.Nbc.hg38 C3L-05861 AML WGS buccal_normal CPT0307170003 149a73ab-2d7c-4436-9206-445a2c0a0679_wgs_gdc_realn.bam 130807377085 BAM harmonized CPTAC3 a45b486c-f931-4d85-a7db-ed57d173c8ba 8334256b882a998f842dba910ffa7427 { 'aliquot_tag': 'ALQ_4980389', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05861.WGS.Tbm C3L-05861 AML WGS tumor_bone_marrow CPT0307200002 CPT0307200002.WholeGenome.RP-2158.bam 47522595242 BAM aligned CPTAC3 be971e95-c787-4fbd-b148-0727428cedf4 999a8b39affbc479ad51eb9cdc295c3a { 'aliquot_tag': 'ALQ_472b9da1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05861.WGS.Tbm.hg38 C3L-05861 AML WGS tumor_bone_marrow CPT0307200002 99f098ca-38df-4e75-abb0-48d888a44848_wgs_gdc_realn.bam 143247750678 BAM harmonized CPTAC3 6e5f92dc-1661-4759-80cb-565482e59b19 674467e54c0beaaa2db42dd4936879a0 { 'aliquot_tag': 'ALQ_472b9da1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05861.WXS.Nbc C3L-05861 AML WXS buccal_normal CPT0307170003 CPT0307170003.WholeExome.RP-1303.bam 26737526911 BAM aligned CPTAC3 d4c34ff8-590d-4172-a359-0c23c40d98d2 4f4166bdeaa824eafb96b2281df69c75 { 'aliquot_tag': 'ALQ_4980389', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05861.WXS.Nbc.hg38 C3L-05861 AML WXS buccal_normal CPT0307170003 149a73ab-2d7c-4436-9206-445a2c0a0679_wxs_gdc_realn.bam 37481982889 BAM harmonized CPTAC3 c72348e7-a76b-4ff7-83b6-878245aea7a2 47ae7689d206ee8d80245bf253a43c73 { 'aliquot_tag': 'ALQ_4980389', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05861.WXS.Tbm C3L-05861 AML WXS tumor_bone_marrow CPT0307200002 CPT0307200002.WholeExome.RP-1303.bam 21868398723 BAM aligned CPTAC3 1b8f129c-18c3-492a-a659-89518511587d b121155f90ccc57ad6620a83d58fb52f { 'aliquot_tag': 'ALQ_472b9da1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05861.WXS.Tbm.hg38 C3L-05861 AML WXS tumor_bone_marrow CPT0307200002 99f098ca-38df-4e75-abb0-48d888a44848_wxs_gdc_realn.bam 30172099373 BAM harmonized CPTAC3 52cc8fbc-4b54-4783-a429-5ad192823cb0 eeaeb5b542fcbc4a2454341764b96d5b { 'aliquot_tag': 'ALQ_472b9da1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05862.MethArray.Green.Tpb C3L-05862 AML Methylation Array tumor_peripheral_blood CPT0342270002 205705520145_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 6ed2d966-56b4-46e2-8eb6-332c880d27f0 6d8b49c35002b29de4798b6d972d788a { 'aliquot_tag': 'ALQ_237960ec', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05862.MethArray.Red.Tpb C3L-05862 AML Methylation Array tumor_peripheral_blood CPT0342270002 205705520145_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 276c813d-aa31-4da0-b57b-9ddaa5eb81dc dde38296936ef604c49253dcf4bf352b { 'aliquot_tag': 'ALQ_237960ec', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05862.miRNA-Seq.Tpb C3L-05862 AML miRNA-Seq tumor_peripheral_blood CPT0342280002 220125_UNC32-K00270_0311_AHMNYYBBXY_ACTTGA_S24_L002_R1_001.unaln.bam 216629061 BAM unaligned CPTAC3 0de6ee7e-b113-45a2-89d2-cb034bbaadf3 6aba474a4cf64d88f4b9e0cd3a9961e0 { 'aliquot_tag': 'ALQ_a129f73d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05862.RNA-Seq.R1_L001.Tpb C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTCGGAGC-GGTTATAA_S3_L001_R1_001.fastq.gz 3427394374 FASTQ R1_L001 unaligned CPTAC3 30ae6399-c882-40b1-b4e9-ff2b6b57bb15 4b3ca5cd6d1b2b475b7828244b2f38d0 { 'aliquot_tag': 'ALQ_a129f73d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05862.RNA-Seq.R2_L001.Tpb C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTCGGAGC-GGTTATAA_S3_L001_R2_001.fastq.gz 3741545345 FASTQ R2_L001 unaligned CPTAC3 16980c6a-440a-4af7-b908-4daa178678a3 e79fd79e86d70494c75b98faa09759da { 'aliquot_tag': 'ALQ_a129f73d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05862.miRNA-Seq.Tpb.hg38 C3L-05862 AML miRNA-Seq tumor_peripheral_blood CPT0342280002 50059e20-3c64-43ee-a47d-29db1a1f3069_mirnaseq_gdc_realn.bam 232126947 BAM harmonized CPTAC3 2200976d-bd91-4363-bb94-fd2156acab13 0838e9ad70e06e631d7422cebd0ac8c6 { 'aliquot_tag': 'ALQ_a129f73d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05862.RNA-Seq.chimeric.Tpb.hg38 C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 7006eed7-0caf-453b-85d7-ca18680bcc2a.rna_seq.chimeric.gdc_realn.bam 634399063 BAM chimeric harmonized CPTAC3 214d7a29-195f-4c5e-8109-350fe65b7e04 0c2f4930d8e29e05abfe77d49386f543 { 'aliquot_tag': 'ALQ_a129f73d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05862.RNA-Seq.genomic.Tpb.hg38 C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 7006eed7-0caf-453b-85d7-ca18680bcc2a.rna_seq.genomic.gdc_realn.bam 7385049873 BAM genomic harmonized CPTAC3 d0686197-8c5b-47af-8622-8affef9d34a4 34cb9a9512578583f93d44ad04877ef2 { 'aliquot_tag': 'ALQ_a129f73d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05862.RNA-Seq.R1_L001.Tpb C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTCGGAGC-GGTTATAA_S3_L001_R1_001.fastq.gz 3427394374 FASTQ R1_L001 unaligned CPTAC3 30ae6399-c882-40b1-b4e9-ff2b6b57bb15 4b3ca5cd6d1b2b475b7828244b2f38d0 { 'aliquot_tag': 'ALQ_a129f73d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L001' } +C3L-05862.RNA-Seq.R2_L001.Tpb C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTCGGAGC-GGTTATAA_S3_L001_R2_001.fastq.gz 3741545345 FASTQ R2_L001 unaligned CPTAC3 16980c6a-440a-4af7-b908-4daa178678a3 e79fd79e86d70494c75b98faa09759da { 'aliquot_tag': 'ALQ_a129f73d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L001' } +C3L-05862.RNA-Seq.transcriptome.Tpb.hg38 C3L-05862 AML RNA-Seq tumor_peripheral_blood CPT0342280002 7006eed7-0caf-453b-85d7-ca18680bcc2a.rna_seq.transcriptome.gdc_realn.bam 5436257028 BAM transcriptome harmonized CPTAC3 cadbf231-7f94-4cf3-8fbf-b6162725b078 86fab154a0492c6710c81f00542c86f9 { 'aliquot_tag': 'ALQ_a129f73d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05862.WGS.Nbc C3L-05862 AML WGS buccal_normal CPT0342240001 CPT0342240001.WholeGenome.RP-2158.bam 45841563474 BAM aligned CPTAC3 8556d413-3ad9-415a-9166-aa41a46a283e 8c27e3cab707c909a8d4d1aa67cd45a6 { 'aliquot_tag': 'ALQ_fdd04b86', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05862.WGS.Nbc.hg38 C3L-05862 AML WGS buccal_normal CPT0342240001 a16868eb-a995-49ef-b7de-f279cfbfdbd1_wgs_gdc_realn.bam 135719680184 BAM harmonized CPTAC3 cc820c53-59a0-4c02-ad49-62d668703147 fd6c7337886906af4a0406913c915979 { 'aliquot_tag': 'ALQ_fdd04b86', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05862.WGS.Tpb C3L-05862 AML WGS tumor_peripheral_blood CPT0342270002 CPT0342270002.WholeGenome.RP-2158.bam 44839633585 BAM aligned CPTAC3 6658985d-4542-4dc4-843e-71930d89299e 50d6c61035e773dda869a3ef3d63ba70 { 'aliquot_tag': 'ALQ_237960ec', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05862.WGS.Tpb.hg38 C3L-05862 AML WGS tumor_peripheral_blood CPT0342270002 3ac63a0b-8aa0-4f8b-b72f-bc9ef50bd8ee_wgs_gdc_realn.bam 133878947429 BAM harmonized CPTAC3 dd71b842-dcca-436e-bd57-2a4a47945ea1 6fb3f551560b853753b22acbde13acd3 { 'aliquot_tag': 'ALQ_237960ec', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05862.WXS.Nbc C3L-05862 AML WXS buccal_normal CPT0342240001 CPT0342240001.WholeExome.RP-1303.bam 31487124942 BAM aligned CPTAC3 9de7e781-1907-46d5-bcbf-799d39c22aa0 97986fdbbec04ced2ca160aec1ffade0 { 'aliquot_tag': 'ALQ_fdd04b86', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05862.WXS.Nbc.hg38 C3L-05862 AML WXS buccal_normal CPT0342240001 a16868eb-a995-49ef-b7de-f279cfbfdbd1_wxs_gdc_realn.bam 42852083239 BAM harmonized CPTAC3 59e58410-19e6-4330-b6c9-ebc6df712950 4a4083231791012ce5011d48aee7690e { 'aliquot_tag': 'ALQ_fdd04b86', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05862.WXS.Tpb C3L-05862 AML WXS tumor_peripheral_blood CPT0342270002 CPT0342270002.WholeExome.RP-1303.bam 29751552173 BAM aligned CPTAC3 56681293-b713-477c-93ee-38c00d3e5439 9cdd73fd707756af14b0e5590d008c75 { 'aliquot_tag': 'ALQ_237960ec', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05862.WXS.Tpb.hg38 C3L-05862 AML WXS tumor_peripheral_blood CPT0342270002 3ac63a0b-8aa0-4f8b-b72f-bc9ef50bd8ee_wxs_gdc_realn.bam 41309502516 BAM harmonized CPTAC3 f81b016a-7298-4e77-a7b1-5627c569d027 01c7bf1981729cf5072e3381eea108ed { 'aliquot_tag': 'ALQ_237960ec', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05865.MethArray.Green.Tbm C3L-05865 AML Methylation Array tumor_bone_marrow CPT0449290002 205705520145_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9234ba3c-02b2-40cd-85b8-810eaae69233 2c4a582349d757fe045d622e60f2d7d8 { 'aliquot_tag': 'ALQ_fa2fe7be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05865.MethArray.Red.Tbm C3L-05865 AML Methylation Array tumor_bone_marrow CPT0449290002 205705520145_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 2fd3072c-e183-443b-a5c6-96ff5dcf81a0 d47611d38f8b0a5d4965893412d77e22 { 'aliquot_tag': 'ALQ_fa2fe7be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05865.miRNA-Seq.Tbm C3L-05865 AML miRNA-Seq tumor_bone_marrow CPT0449300002 220125_UNC32-K00270_0311_AHMNYYBBXY_GACGAC_S14_L003_R1_001.unaln.bam 241844446 BAM unaligned CPTAC3 690ee6ad-4f6f-4550-be7f-7f503963bf83 00e7f324b339a4272d3ddd9e4bc6b8b0 { 'aliquot_tag': 'ALQ_3c63566a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05865.RNA-Seq.R1_L002.Tbm C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 220114_UNC32-K00270_0310_AHMWT5BBXY_GATCTATC-ATGAGGCT_S7_L002_R1_001.fastq.gz 3596489598 FASTQ R1_L002 unaligned CPTAC3 f5fb6664-71c2-470c-b2f4-924a1a7f756b 9f525502f0de405e8dafc1678540eb6a { 'aliquot_tag': 'ALQ_3c63566a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05865.RNA-Seq.R2_L002.Tbm C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 220114_UNC32-K00270_0310_AHMWT5BBXY_GATCTATC-ATGAGGCT_S7_L002_R2_001.fastq.gz 3925737100 FASTQ R2_L002 unaligned CPTAC3 5ce9ed2b-d5f6-4f16-bf27-ecb3979e86b6 00dea86402c5eaca648b0a6208290956 { 'aliquot_tag': 'ALQ_3c63566a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05865.miRNA-Seq.Tbm.hg38 C3L-05865 AML miRNA-Seq tumor_bone_marrow CPT0449300002 c0bc0518-c44c-423a-ae27-9747adf4e393_mirnaseq_gdc_realn.bam 269893894 BAM harmonized CPTAC3 68e92743-bb46-480e-8f2a-5409df845f58 4f068e0cc014ed010e97cd8892330e84 { 'aliquot_tag': 'ALQ_3c63566a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05865.RNA-Seq.chimeric.Tbm.hg38 C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 017b54e9-a9e5-4900-8004-3bfa03b4981d.rna_seq.chimeric.gdc_realn.bam 578823785 BAM chimeric harmonized CPTAC3 782b930d-fa3d-405e-bf3c-48bc807f9882 e00752f968ecb0fa6257e6e45e7fe0b5 { 'aliquot_tag': 'ALQ_3c63566a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05865.RNA-Seq.genomic.Tbm.hg38 C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 017b54e9-a9e5-4900-8004-3bfa03b4981d.rna_seq.genomic.gdc_realn.bam 7411104849 BAM genomic harmonized CPTAC3 93eddf2e-16f7-4056-890c-42b2ccd1278d 78a6fb89f46d9de923532723cc81c44f { 'aliquot_tag': 'ALQ_3c63566a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05865.RNA-Seq.R1_L002.Tbm C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 220114_UNC32-K00270_0310_AHMWT5BBXY_GATCTATC-ATGAGGCT_S7_L002_R1_001.fastq.gz 3596489598 FASTQ R1_L002 unaligned CPTAC3 f5fb6664-71c2-470c-b2f4-924a1a7f756b 9f525502f0de405e8dafc1678540eb6a { 'aliquot_tag': 'ALQ_3c63566a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-05865.RNA-Seq.R2_L002.Tbm C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 220114_UNC32-K00270_0310_AHMWT5BBXY_GATCTATC-ATGAGGCT_S7_L002_R2_001.fastq.gz 3925737100 FASTQ R2_L002 unaligned CPTAC3 5ce9ed2b-d5f6-4f16-bf27-ecb3979e86b6 00dea86402c5eaca648b0a6208290956 { 'aliquot_tag': 'ALQ_3c63566a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-05865.RNA-Seq.transcriptome.Tbm.hg38 C3L-05865 AML RNA-Seq tumor_bone_marrow CPT0449300002 017b54e9-a9e5-4900-8004-3bfa03b4981d.rna_seq.transcriptome.gdc_realn.bam 6952487426 BAM transcriptome harmonized CPTAC3 02473551-0aca-4892-a62a-9b390a5f30f9 bfb51c91b6a15ec466e9eebd594c4b86 { 'aliquot_tag': 'ALQ_3c63566a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05865.WGS.Nbc C3L-05865 AML WGS buccal_normal CPT0449260002 CPT0449260002.WholeGenome.RP-2158.bam 53830159842 BAM aligned CPTAC3 ed660cc7-9c95-46db-a7b6-e7f274793a56 c17fecb51fff26afb9998e8235ce3bcf { 'aliquot_tag': 'ALQ_787f706f', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05865.WGS.Nbc.hg38 C3L-05865 AML WGS buccal_normal CPT0449260002 8f6e6e7d-91f1-4945-a4b2-66208f3f2176_wgs_gdc_realn.bam 173847752393 BAM harmonized CPTAC3 e8d3fe3c-d407-4468-9c8b-10842bb7b3e9 6a53c23b6599e455a78e8546870b562c { 'aliquot_tag': 'ALQ_787f706f', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05865.WGS.Tbm C3L-05865 AML WGS tumor_bone_marrow CPT0449290002 CPT0449290002.WholeGenome.RP-2158.bam 45892108482 BAM aligned CPTAC3 28475d39-0b20-4433-9fda-0554d54ede2f 375a69c20d026559261908faae62fa0e { 'aliquot_tag': 'ALQ_fa2fe7be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05865.WGS.Tbm.hg38 C3L-05865 AML WGS tumor_bone_marrow CPT0449290002 4201cf72-9bd9-43dd-8023-0c74842dca1e_wgs_gdc_realn.bam 393744807400 BAM harmonized CPTAC3 76bd6c51-c345-4984-b88a-869c51ebd318 5a903907e0a7a894fc370db1d163fa69 { 'aliquot_tag': 'ALQ_fa2fe7be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05865.WXS.Nbc C3L-05865 AML WXS buccal_normal CPT0449260002 CPT0449260002.WholeExome.RP-1303.bam 28624204950 BAM aligned CPTAC3 3f46ea96-6ccd-455b-ab41-d509788b9c8e 81207d87be9c3f9ce7060b53e0ce5bdb { 'aliquot_tag': 'ALQ_787f706f', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05865.WXS.Nbc.hg38 C3L-05865 AML WXS buccal_normal CPT0449260002 8f6e6e7d-91f1-4945-a4b2-66208f3f2176_wxs_gdc_realn.bam 39006539162 BAM harmonized CPTAC3 31fed2ee-eb65-40c7-b0ec-29b6473228db af8fe10f20ac18fd48a60503086a6607 { 'aliquot_tag': 'ALQ_787f706f', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05865.WXS.Tbm C3L-05865 AML WXS tumor_bone_marrow CPT0449290002 CPT0449290002.WholeExome.RP-1303.bam 29931341938 BAM aligned CPTAC3 364a81a0-ab13-4ee3-ad14-4d1c621cf40a 00a9684c629eddbe935a180c0e83664c { 'aliquot_tag': 'ALQ_fa2fe7be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05865.WXS.Tbm.hg38 C3L-05865 AML WXS tumor_bone_marrow CPT0449290002 4201cf72-9bd9-43dd-8023-0c74842dca1e_wxs_gdc_realn.bam 41740398964 BAM harmonized CPTAC3 f4e40196-62f9-4115-b08c-47b632673cd4 20720c9aa3e6a7d767bd5571737ae8a0 { 'aliquot_tag': 'ALQ_fa2fe7be', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05866.MethArray.Green.Tbm C3L-05866 AML Methylation Array tumor_bone_marrow CPT0451240002 205987780161_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 aaf98a92-0716-473c-99a3-fa111599a496 e0d44034d9a0bae06ac076e2d6210bc0 { 'aliquot_tag': 'ALQ_fdfa6df6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05866.MethArray.Red.Tbm C3L-05866 AML Methylation Array tumor_bone_marrow CPT0451240002 205987780161_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 eef6c535-778d-4a7a-a7cc-109068c24e3d 2a011f09b49881238a0485ad620c3936 { 'aliquot_tag': 'ALQ_fdfa6df6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05866.miRNA-Seq.Tbm C3L-05866 AML miRNA-Seq tumor_bone_marrow CPT0451250002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCATTC_S18_L003_R1_001.unaln.bam 230634784 BAM unaligned CPTAC3 1d1e4f08-7ff7-4831-aef5-94022915383f 58f186a66317661e5dbc66e7de62bb2e { 'aliquot_tag': 'ALQ_c09a4446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05866.RNA-Seq.R1_L003.Tbm C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGCCTAG-ACCACTTA_S12_L003_R1_001.fastq.gz 4253065889 FASTQ R1_L003 unaligned CPTAC3 2735ec95-31b1-4110-8556-01db4b0c338c 1cda48f7b97c3528e42e24b52ba633ac { 'aliquot_tag': 'ALQ_c09a4446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05866.RNA-Seq.R2_L003.Tbm C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGCCTAG-ACCACTTA_S12_L003_R2_001.fastq.gz 4647798540 FASTQ R2_L003 unaligned CPTAC3 e2f0fe12-3f34-44cf-ae20-f306271c6117 4c2a1ee079ca86476e187d1f5a9695c5 { 'aliquot_tag': 'ALQ_c09a4446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05866.miRNA-Seq.Tbm.hg38 C3L-05866 AML miRNA-Seq tumor_bone_marrow CPT0451250002 2a68617d-cd63-4f03-929a-fd45679d0951_mirnaseq_gdc_realn.bam 257254197 BAM harmonized CPTAC3 464a1f5b-d52d-41b8-9ad2-0e8bf2e2c421 339d43b1bb5173d66994b8a420fe48a2 { 'aliquot_tag': 'ALQ_c09a4446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05866.RNA-Seq.chimeric.Tbm.hg38 C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 76570bc0-812e-4019-811a-daf16a489d3d.rna_seq.chimeric.gdc_realn.bam 808584297 BAM chimeric harmonized CPTAC3 aac4f54e-e7b7-4697-afb4-736841e7de35 6488afa5eeb0f93b5560ee6998be117a { 'aliquot_tag': 'ALQ_c09a4446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05866.RNA-Seq.genomic.Tbm.hg38 C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 76570bc0-812e-4019-811a-daf16a489d3d.rna_seq.genomic.gdc_realn.bam 8707946437 BAM genomic harmonized CPTAC3 18803820-5eaf-4248-b491-a699c6669520 825eaed2786c1a6314f341c80ca78094 { 'aliquot_tag': 'ALQ_c09a4446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05866.RNA-Seq.R1_L003.Tbm C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGCCTAG-ACCACTTA_S12_L003_R1_001.fastq.gz 4253065889 FASTQ R1_L003 unaligned CPTAC3 2735ec95-31b1-4110-8556-01db4b0c338c 1cda48f7b97c3528e42e24b52ba633ac { 'aliquot_tag': 'ALQ_c09a4446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-05866.RNA-Seq.R2_L003.Tbm C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGCCTAG-ACCACTTA_S12_L003_R2_001.fastq.gz 4647798540 FASTQ R2_L003 unaligned CPTAC3 e2f0fe12-3f34-44cf-ae20-f306271c6117 4c2a1ee079ca86476e187d1f5a9695c5 { 'aliquot_tag': 'ALQ_c09a4446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-05866.RNA-Seq.transcriptome.Tbm.hg38 C3L-05866 AML RNA-Seq tumor_bone_marrow CPT0451250002 76570bc0-812e-4019-811a-daf16a489d3d.rna_seq.transcriptome.gdc_realn.bam 7000010384 BAM transcriptome harmonized CPTAC3 4207d626-8e02-43cc-a98a-7a710c5ee20d 1da4db97f6c56f3c48d7ff9b8d527d1d { 'aliquot_tag': 'ALQ_c09a4446', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05866.WGS.Nbc C3L-05866 AML WGS buccal_normal CPT0451210002 CPT0451210002.WholeGenome.RP-2158.bam 47738322998 BAM aligned CPTAC3 98b0bc7f-94df-4354-8178-0f971c172e70 a119642ec54632338654982223548a0e { 'aliquot_tag': 'ALQ_351ae286', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05866.WGS.Nbc.hg38 C3L-05866 AML WGS buccal_normal CPT0451210002 19892a7d-c8ad-42ac-879a-b59be77d2d74_wgs_gdc_realn.bam 140153318879 BAM harmonized CPTAC3 7f823e8f-f7ae-4cc6-a260-7e07843b534d 452dd5f9af97337ed394a0c0b8add9d4 { 'aliquot_tag': 'ALQ_351ae286', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05866.WGS.Tbm C3L-05866 AML WGS tumor_bone_marrow CPT0451240002 CPT0451240002.WholeGenome.RP-2158.bam 43651106968 BAM aligned CPTAC3 e5298e8c-8dc9-4b45-8742-28f3253748cb d2cc59c8ec5ed934d0e3f6c3e328f397 { 'aliquot_tag': 'ALQ_fdfa6df6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05866.WGS.Tbm.hg38 C3L-05866 AML WGS tumor_bone_marrow CPT0451240002 ce3b7890-d847-48f9-9a91-32c20d88da64_wgs_gdc_realn.bam 131138287954 BAM harmonized CPTAC3 cabdf6e7-64e2-4429-87d0-7f95a3c9054f 6e30d7b3440aaefb7b9072c687042cee { 'aliquot_tag': 'ALQ_fdfa6df6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05866.WXS.Nbc C3L-05866 AML WXS buccal_normal CPT0451210002 CPT0451210002.WholeExome.RP-1303.bam 28472841764 BAM aligned CPTAC3 babe5e27-0c52-4d6d-aee4-cddb7e5d568a c450e6fa2547e2385af749060fcba3be { 'aliquot_tag': 'ALQ_351ae286', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05866.WXS.Nbc.hg38 C3L-05866 AML WXS buccal_normal CPT0451210002 19892a7d-c8ad-42ac-879a-b59be77d2d74_wxs_gdc_realn.bam 38675547780 BAM harmonized CPTAC3 a70ea14c-6e6b-46c1-b114-9c5ff9435f9d 3339246988c581a484c91a80c92d069f { 'aliquot_tag': 'ALQ_351ae286', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05866.WXS.Tbm C3L-05866 AML WXS tumor_bone_marrow CPT0451240002 CPT0451240002.WholeExome.RP-1303.bam 24467398848 BAM aligned CPTAC3 3d980cf3-af7a-4cc6-a27a-70a3e01c2a41 2d811b41469df90fff3e46d3d43386fb { 'aliquot_tag': 'ALQ_fdfa6df6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05866.WXS.Tbm.hg38 C3L-05866 AML WXS tumor_bone_marrow CPT0451240002 ce3b7890-d847-48f9-9a91-32c20d88da64_wxs_gdc_realn.bam 34067822652 BAM harmonized CPTAC3 e295b011-7109-42b0-acaf-10b6943fe584 09bba5944cb560ae05c1e305323ee981 { 'aliquot_tag': 'ALQ_fdfa6df6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05867.MethArray.Green.Tpb C3L-05867 AML Methylation Array tumor_peripheral_blood CPT0370770002 205707890036_R01C01_Grn.idat 13677891 IDAT Green NA CPTAC3 0916660b-a28e-42cd-9b25-d3b9798fbcbd f35ba9f2fbb596f7399a215e0287f904 { 'aliquot_tag': 'ALQ_6aa4e795', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05867.MethArray.Red.Tpb C3L-05867 AML Methylation Array tumor_peripheral_blood CPT0370770002 205707890036_R01C01_Red.idat 13677891 IDAT Red NA CPTAC3 d9e62da0-1f16-4fe6-a6af-8f4ac3a850a8 d3681620640a0660cc45d861985aaaf5 { 'aliquot_tag': 'ALQ_6aa4e795', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05867.miRNA-Seq.Tpb C3L-05867 AML miRNA-Seq tumor_peripheral_blood CPT0370840002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACCGG_S46_L003_R1_001.unaln.bam 246960590 BAM unaligned CPTAC3 67c46c83-ccdb-48f4-a359-ff6ee94808eb 6e0cfe30eed01acd032f2b6cfc67c3e9 { 'aliquot_tag': 'ALQ_dc522f90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05867.RNA-Seq.R1_L006.Tpb C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACCTTGGC-GGCCTCAT_S21_L006_R1_001.fastq.gz 3888735161 FASTQ R1_L006 unaligned CPTAC3 9f21ddc0-88a2-4e45-b9f7-326107a21ea6 97b184b2a03a08c0ef868644796cd3e9 { 'aliquot_tag': 'ALQ_dc522f90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05867.RNA-Seq.R2_L006.Tpb C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACCTTGGC-GGCCTCAT_S21_L006_R2_001.fastq.gz 4142355974 FASTQ R2_L006 unaligned CPTAC3 c8eed0e7-ba2c-41c5-880e-6db790f15b69 3192e02515f05d5c5419ec806ed13b3d { 'aliquot_tag': 'ALQ_dc522f90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05867.miRNA-Seq.Tpb.hg38 C3L-05867 AML miRNA-Seq tumor_peripheral_blood CPT0370840002 fbed7997-b09b-4b58-9f46-2fcf829866fa_mirnaseq_gdc_realn.bam 275036928 BAM harmonized CPTAC3 7ddeb82c-ba74-4055-a9eb-7ad45e9fc215 5d98d89409a507e597ef90b2f97661d7 { 'aliquot_tag': 'ALQ_dc522f90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05867.RNA-Seq.chimeric.Tpb.hg38 C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 1de51a72-bdc9-4e30-9593-d7bf7b049e04.rna_seq.chimeric.gdc_realn.bam 539928665 BAM chimeric harmonized CPTAC3 fb7dda22-a61e-4ead-8acf-dc4aafb852b1 caaf6b1672e942a47b6b76d115e802f6 { 'aliquot_tag': 'ALQ_dc522f90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05867.RNA-Seq.genomic.Tpb.hg38 C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 1de51a72-bdc9-4e30-9593-d7bf7b049e04.rna_seq.genomic.gdc_realn.bam 7851265611 BAM genomic harmonized CPTAC3 045dd7e3-1afc-45d3-b4eb-9768b2a1476d d4f4585e941e54126baede66e0e09827 { 'aliquot_tag': 'ALQ_dc522f90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05867.RNA-Seq.R1_L006.Tpb C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACCTTGGC-GGCCTCAT_S21_L006_R1_001.fastq.gz 3888735161 FASTQ R1_L006 unaligned CPTAC3 9f21ddc0-88a2-4e45-b9f7-326107a21ea6 97b184b2a03a08c0ef868644796cd3e9 { 'aliquot_tag': 'ALQ_dc522f90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L006' } +C3L-05867.RNA-Seq.R2_L006.Tpb C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 211207_UNC32-K00270_0306_BHMW5YBBXY_ACCTTGGC-GGCCTCAT_S21_L006_R2_001.fastq.gz 4142355974 FASTQ R2_L006 unaligned CPTAC3 c8eed0e7-ba2c-41c5-880e-6db790f15b69 3192e02515f05d5c5419ec806ed13b3d { 'aliquot_tag': 'ALQ_dc522f90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L006' } +C3L-05867.RNA-Seq.transcriptome.Tpb.hg38 C3L-05867 AML RNA-Seq tumor_peripheral_blood CPT0370840002 1de51a72-bdc9-4e30-9593-d7bf7b049e04.rna_seq.transcriptome.gdc_realn.bam 6966938454 BAM transcriptome harmonized CPTAC3 91f7ccfb-cc6d-4fe8-a431-c5dbacf6df10 fc06a2b8c3b92f04fa13ca1ca566684e { 'aliquot_tag': 'ALQ_dc522f90', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05867.WGS.Tpb C3L-05867 AML WGS tumor_peripheral_blood CPT0370770002 CPT0370770002.WholeGenome.RP-2158.bam 49774987735 BAM aligned CPTAC3 b6f4f11c-e66c-4258-bd1c-720340c01195 1f2dd0e2eaf44df8798996eb55f7f12e { 'aliquot_tag': 'ALQ_6aa4e795', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05867.WGS.Tpb.hg38 C3L-05867 AML WGS tumor_peripheral_blood CPT0370770002 27e14fca-b7f7-43cd-9ffb-40bdb64c4eda_wgs_gdc_realn.bam 146166739322 BAM harmonized CPTAC3 2c55c877-04c4-4d6f-8029-7a108e397bd7 7d84467c93ce277b379e603ff0dd1ed9 { 'aliquot_tag': 'ALQ_6aa4e795', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05867.WXS.Nbc C3L-05867 AML WXS buccal_normal CPT0370740002 CPT0370740002.WholeExome.RP-1303.bam 28258150421 BAM aligned CPTAC3 e804ee94-8c1c-4637-a3a1-085f3f6ad0fd a674f13102a0d25ddae2e19c3e0f8551 { 'aliquot_tag': 'ALQ_2d049d45', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05867.WXS.Nbc.hg38 C3L-05867 AML WXS buccal_normal CPT0370740002 4e0db17d-bd9e-405a-bb3f-f64d30b1941b_wxs_gdc_realn.bam 39048654846 BAM harmonized CPTAC3 e7f2cc73-9b6f-41b8-8e14-0c7e899a8792 2b92c60f98a881931d518c0e0b5bc170 { 'aliquot_tag': 'ALQ_2d049d45', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05867.WXS.Tpb C3L-05867 AML WXS tumor_peripheral_blood CPT0370770002 CPT0370770002.WholeExome.RP-1303.bam 31401698853 BAM aligned CPTAC3 0a1b5634-96bd-43db-9ca2-7429e819910d b49bbcbbf14292f838a01e924c703fd2 { 'aliquot_tag': 'ALQ_6aa4e795', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05867.WXS.Tpb.hg38 C3L-05867 AML WXS tumor_peripheral_blood CPT0370770002 27e14fca-b7f7-43cd-9ffb-40bdb64c4eda_wxs_gdc_realn.bam 43486815455 BAM harmonized CPTAC3 0f03f041-f06d-44f0-945e-95304337b255 65f794cf7b764f38792037897090605e { 'aliquot_tag': 'ALQ_6aa4e795', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05870.MethArray.Green.Tpb C3L-05870 AML Methylation Array tumor_peripheral_blood CPT0299480002 205987780101_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 d663f9a3-012f-47c0-aa6f-a61892bf78ac cc02f2060fad2e305bc1564ef96b1f19 { 'aliquot_tag': 'ALQ_f9094148', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05870.MethArray.Red.Tpb C3L-05870 AML Methylation Array tumor_peripheral_blood CPT0299480002 205987780101_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 10136479-b2c2-4c85-80f5-cf86ede3abef 4b7ea46b63976f186993782731d4e76f { 'aliquot_tag': 'ALQ_f9094148', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05870.miRNA-Seq.Tpb C3L-05870 AML miRNA-Seq tumor_peripheral_blood CPT0299490002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCAACA_S8_L001_R1_001.unaln.bam 297322755 BAM unaligned CPTAC3 f5528fac-2f34-4b34-8e83-cde930e6b002 27ad27303513f0d3a618fe1d5227fb78 { 'aliquot_tag': 'ALQ_c46968f8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05870.RNA-Seq.R1_L004.Tpb C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 211207_UNC32-K00270_0305_AHMW37BBXY_GCTTGTCA-GAACATAC_S15_L004_R1_001.fastq.gz 3687678146 FASTQ R1_L004 unaligned CPTAC3 335a6971-98a0-48a8-9b22-caa10ab05757 3594aebbdeee63fe143c2e3399299a3c { 'aliquot_tag': 'ALQ_c46968f8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05870.RNA-Seq.R2_L004.Tpb C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 211207_UNC32-K00270_0305_AHMW37BBXY_GCTTGTCA-GAACATAC_S15_L004_R2_001.fastq.gz 4012815314 FASTQ R2_L004 unaligned CPTAC3 e7c743d4-69ee-489c-a2be-d7fb39114b7d e1db27f7047d52bf28f0acca9eeb78a1 { 'aliquot_tag': 'ALQ_c46968f8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05870.miRNA-Seq.Tpb.hg38 C3L-05870 AML miRNA-Seq tumor_peripheral_blood CPT0299490002 a609b8be-75a6-453a-be64-310778d43e7d_mirnaseq_gdc_realn.bam 318834538 BAM harmonized CPTAC3 b4d9aa79-4961-49e7-839d-a1bb40b34c3b a05d3dafc66583c0b843df56aa253cd2 { 'aliquot_tag': 'ALQ_c46968f8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05870.RNA-Seq.chimeric.Tpb.hg38 C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 c8394de1-5b0f-45cc-8049-489724ab4bde.rna_seq.chimeric.gdc_realn.bam 565129914 BAM chimeric harmonized CPTAC3 1e7b47a1-1f1f-489f-8414-87a727adaac3 a996b44194ede67e50b9339d04df4e7d { 'aliquot_tag': 'ALQ_c46968f8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05870.RNA-Seq.genomic.Tpb.hg38 C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 c8394de1-5b0f-45cc-8049-489724ab4bde.rna_seq.genomic.gdc_realn.bam 7739050522 BAM genomic harmonized CPTAC3 37f9bad3-cef9-4e03-93c7-9e3a80e43255 d4f5ed4dfb71c1421494f0beb3a94754 { 'aliquot_tag': 'ALQ_c46968f8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05870.RNA-Seq.R1_L004.Tpb C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 211207_UNC32-K00270_0305_AHMW37BBXY_GCTTGTCA-GAACATAC_S15_L004_R1_001.fastq.gz 3687678146 FASTQ R1_L004 unaligned CPTAC3 335a6971-98a0-48a8-9b22-caa10ab05757 3594aebbdeee63fe143c2e3399299a3c { 'aliquot_tag': 'ALQ_c46968f8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L004' } +C3L-05870.RNA-Seq.R2_L004.Tpb C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 211207_UNC32-K00270_0305_AHMW37BBXY_GCTTGTCA-GAACATAC_S15_L004_R2_001.fastq.gz 4012815314 FASTQ R2_L004 unaligned CPTAC3 e7c743d4-69ee-489c-a2be-d7fb39114b7d e1db27f7047d52bf28f0acca9eeb78a1 { 'aliquot_tag': 'ALQ_c46968f8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L004' } +C3L-05870.RNA-Seq.transcriptome.Tpb.hg38 C3L-05870 AML RNA-Seq tumor_peripheral_blood CPT0299490002 c8394de1-5b0f-45cc-8049-489724ab4bde.rna_seq.transcriptome.gdc_realn.bam 10214087384 BAM transcriptome harmonized CPTAC3 523a71be-9394-4a34-b2b6-9e3e995cc9cc 6e50ada7c022c8e01af037b234992788 { 'aliquot_tag': 'ALQ_c46968f8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05870.WGS.Nbc C3L-05870 AML WGS buccal_normal CPT0299470001 CPT0299470001.WholeGenome.RP-2158.bam 51225930203 BAM aligned CPTAC3 9ce86255-067f-4c22-86e1-ae563b2b7768 5fd19c6452fb39d456e4ffbfc15e8ab2 { 'aliquot_tag': 'ALQ_e2508723', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05870.WGS.Nbc.hg38 C3L-05870 AML WGS buccal_normal CPT0299470001 5c8aba49-4460-440f-9963-1500cb52785a_wgs_gdc_realn.bam 157609906711 BAM harmonized CPTAC3 08dc064e-d5a3-417c-ac3a-562b88329bc9 a1fa81cb6cd95c0650a1f85938f57019 { 'aliquot_tag': 'ALQ_e2508723', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05870.WGS.Tpb C3L-05870 AML WGS tumor_peripheral_blood CPT0299480002 CPT0299480002.WholeGenome.RP-2158.bam 54163145795 BAM aligned CPTAC3 32b41085-afc7-4c04-a7ce-f0a8fee7b20d b2fd29049c45d5369022b6cf21e70ff0 { 'aliquot_tag': 'ALQ_f9094148', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05870.WGS.Tpb.hg38 C3L-05870 AML WGS tumor_peripheral_blood CPT0299480002 4db8c894-62ec-43e6-8e5a-65abb040a80e_wgs_gdc_realn.bam 154828999780 BAM harmonized CPTAC3 1bd4235b-e682-4fa9-a261-cc25ffa7dd04 ef7ffdd6258b40e2884896c919cbe417 { 'aliquot_tag': 'ALQ_f9094148', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05870.WXS.Nbc C3L-05870 AML WXS buccal_normal CPT0299470001 CPT0299470001.WholeExome.RP-1303.bam 28810346186 BAM aligned CPTAC3 674393d7-a8e2-4adf-8bb2-de6642c75817 76aeb3c8e6e27ca75a07cae366415913 { 'aliquot_tag': 'ALQ_e2508723', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05870.WXS.Nbc.hg38 C3L-05870 AML WXS buccal_normal CPT0299470001 5c8aba49-4460-440f-9963-1500cb52785a_wxs_gdc_realn.bam 39685880868 BAM harmonized CPTAC3 dde74b6b-38ea-4791-9571-2174d6ac026f 48905840634f8fd8094f070bc7ee3b89 { 'aliquot_tag': 'ALQ_e2508723', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05870.WXS.Tpb C3L-05870 AML WXS tumor_peripheral_blood CPT0299480002 CPT0299480002.WholeExome.RP-1303.bam 28751353934 BAM aligned CPTAC3 084ba04f-3465-40f2-8077-df152d385acd 0d1f3e1c9e3d078c7d3238b4b33e68e7 { 'aliquot_tag': 'ALQ_f9094148', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05870.WXS.Tpb.hg38 C3L-05870 AML WXS tumor_peripheral_blood CPT0299480002 4db8c894-62ec-43e6-8e5a-65abb040a80e_wxs_gdc_realn.bam 39710169863 BAM harmonized CPTAC3 f808106f-0df8-4c92-8c51-506d15c9c8df 2a0007b790cd61f66a8104983b780516 { 'aliquot_tag': 'ALQ_f9094148', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05872.MethArray.Green.Tbm C3L-05872 AML Methylation Array tumor_bone_marrow CPT0299550002 205555380136_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e8ecbe8f-806c-4269-920c-27e7c7905eb5 27b08dfec4a02760cf87a6b351674f03 { 'aliquot_tag': 'ALQ_cac5565c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05872.MethArray.Red.Tbm C3L-05872 AML Methylation Array tumor_bone_marrow CPT0299550002 205555380136_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 18778619-dfe7-4d1d-99ee-55d68abbbe31 1c0c710439b0184fb30eedc72eb59be4 { 'aliquot_tag': 'ALQ_cac5565c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05872.miRNA-Seq.Tbm C3L-05872 AML miRNA-Seq tumor_bone_marrow CPT0299560002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTCCGC_S15_L001_R1_001.unaln.bam 221909396 BAM unaligned CPTAC3 b2822218-dfb1-4495-a31a-5f484576aae7 6bdca808694cc12622a21f0560432e19 { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05872.RNA-Seq.chimeric.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 6aab3b59-c02d-4ca0-a235-43d1ceb2d5e5.rna_seq.chimeric.gdc_realn.bam 90267697 BAM chimeric harmonized CPTAC3 a3642dbf-830d-460b-9c6c-616a9b44bf77 4105f967f247eb16d14d1f380c8168a0 { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05872.RNA-Seq.genomic.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 6aab3b59-c02d-4ca0-a235-43d1ceb2d5e5.rna_seq.genomic.gdc_realn.bam 7073588987 BAM genomic harmonized CPTAC3 a501c239-12de-4586-a0de-93a0ba4c8a27 1c163c67b1e826e20dc9904e63e388d5 { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05872.RNA-Seq.R1_L004.Tbm C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGTCGGA-GCTTGCGC_S15_L004_R1_001.fastq.gz 3590502666 FASTQ R1_L004 unaligned CPTAC3 cf380f3c-caa7-43f8-bd19-f3f0fe913af7 17df40b59d7a08e29e07165ff1525871 { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05872.RNA-Seq.R2_L004.Tbm C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGTCGGA-GCTTGCGC_S15_L004_R2_001.fastq.gz 3840232436 FASTQ R2_L004 unaligned CPTAC3 3d5c0aaf-5d4e-44d6-b9d1-6aa6ab92911e b38c7157e30a191ad4ee51d3630819e0 { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05872.RNA-Seq.transcriptome.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 6aab3b59-c02d-4ca0-a235-43d1ceb2d5e5.rna_seq.transcriptome.gdc_realn.bam 9765887511 BAM transcriptome harmonized CPTAC3 72236234-ade4-4a54-9210-eb9ea4e7ded5 a9dadb2377211491e07c2461f40f091b { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05872.miRNA-Seq.Tbm.hg38 C3L-05872 AML miRNA-Seq tumor_bone_marrow CPT0299560002 684f8faa-1992-4291-bcec-8ef42606eb2b_mirnaseq_gdc_realn.bam 236635548 BAM harmonized CPTAC3 c31c3204-1bd8-470f-9556-67ccf7f1196f 22f2cbcbe63308daafbb1003d2036ed9 { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05872.RNA-Seq.chimeric.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 5f30492c-216e-4678-b667-8603c509423f.rna_seq.chimeric.gdc_realn.bam 90254959 BAM chimeric harmonized CPTAC3 51c401f6-065b-418e-99f4-148e7d7dc7b3 7efe5c701a76d645ca5e021089b968cb { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05872.RNA-Seq.genomic.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 5f30492c-216e-4678-b667-8603c509423f.rna_seq.genomic.gdc_realn.bam 7085368824 BAM genomic harmonized CPTAC3 22f6067a-8cbf-45f8-8844-2120baad708f 79cf9d0cbc681f0d9f880da2b2a9aeac { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05872.RNA-Seq.R1_L004.Tbm C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGTCGGA-GCTTGCGC_S15_L004_R1_001.fastq.gz 3590502666 FASTQ R1_L004 unaligned CPTAC3 cf380f3c-caa7-43f8-bd19-f3f0fe913af7 17df40b59d7a08e29e07165ff1525871 { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-05872.RNA-Seq.R2_L004.Tbm C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 210319_UNC31-K00269_0296_AHKT37BBXY_GTGTCGGA-GCTTGCGC_S15_L004_R2_001.fastq.gz 3840232436 FASTQ R2_L004 unaligned CPTAC3 3d5c0aaf-5d4e-44d6-b9d1-6aa6ab92911e b38c7157e30a191ad4ee51d3630819e0 { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-05872.RNA-Seq.transcriptome.Tbm.hg38 C3L-05872 AML RNA-Seq tumor_bone_marrow CPT0299560002 5f30492c-216e-4678-b667-8603c509423f.rna_seq.transcriptome.gdc_realn.bam 11348680422 BAM transcriptome harmonized CPTAC3 45c3cdde-b881-49e4-be7d-f2d040f291bf c2d993fd975b8660f956fd5a742bd818 { 'aliquot_tag': 'ALQ_8d652c8c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05872.WGS.Nbc C3L-05872 AML WGS buccal_normal CPT0299540001 CPT0299540001.WholeGenome.RP-2158.bam 44668042889 BAM aligned CPTAC3 8d6c3dad-3d24-46c6-b2b0-b8148dd9029c 55107aadf6f456f5f27ef06e1fcf33c8 { 'aliquot_tag': 'ALQ_6eac2e56', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05872.WGS.Nbc.hg38 C3L-05872 AML WGS buccal_normal CPT0299540001 344e5a94-a418-4792-9720-b4951cc25c7d_wgs_gdc_realn.bam 132424783599 BAM harmonized CPTAC3 64766b93-1829-4232-a292-eeaf37c967b9 513b998a04620925a1c9ee843ed7fd26 { 'aliquot_tag': 'ALQ_6eac2e56', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05872.WGS.Tbm C3L-05872 AML WGS tumor_bone_marrow CPT0299550002 CPT0299550002.WholeGenome.RP-2158.bam 65145611148 BAM aligned CPTAC3 5f0dd23f-af53-473f-82d8-131bed8ce426 2c521f19fbd98eb9a0bd060e78967e6a { 'aliquot_tag': 'ALQ_cac5565c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05872.WGS.Tbm.hg38 C3L-05872 AML WGS tumor_bone_marrow CPT0299550002 d627fc82-0d74-405f-b841-0c0282413f6c_wgs_gdc_realn.bam 193350656603 BAM harmonized CPTAC3 571c510d-7fcc-40fd-8f1f-905375d8dfcc f3a8ee6bcd157cdbf2277317087498dc { 'aliquot_tag': 'ALQ_cac5565c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05872.WXS.Nbc C3L-05872 AML WXS buccal_normal CPT0299540001 CPT0299540001.WholeExome.RP-1303.bam 39958495658 BAM aligned CPTAC3 ce5dd2f4-8ecf-431f-bc06-813e32c5e4f6 25438bddf2548fc2eb5f04045d15a473 { 'aliquot_tag': 'ALQ_6eac2e56', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05872.WXS.Nbc.hg38 C3L-05872 AML WXS buccal_normal CPT0299540001 344e5a94-a418-4792-9720-b4951cc25c7d_wxs_gdc_realn.bam 57205482721 BAM harmonized CPTAC3 2fec3d76-e6cd-476c-aede-afaae7821287 06d8ad300271ff98ba02905f3898bd57 { 'aliquot_tag': 'ALQ_6eac2e56', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05872.WXS.Tbm C3L-05872 AML WXS tumor_bone_marrow CPT0299550002 CPT0299550002.WholeExome.RP-1303.bam 23800262582 BAM aligned CPTAC3 316742a5-5a01-4e37-b907-a12468c9c8ee 41134a1402477ab0a880e2f83f59ecac { 'aliquot_tag': 'ALQ_cac5565c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05872.WXS.Tbm.hg38 C3L-05872 AML WXS tumor_bone_marrow CPT0299550002 d627fc82-0d74-405f-b841-0c0282413f6c_wxs_gdc_realn.bam 33646048565 BAM harmonized CPTAC3 e10bf2cb-d23a-45d4-92a5-13fc8d54d6a4 b87ee7ec87ee5e825b349b4c17b01c09 { 'aliquot_tag': 'ALQ_cac5565c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05874.MethArray.Green.Tbm C3L-05874 AML Methylation Array tumor_bone_marrow CPT0299880002 205555390164_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 473885b2-a3b0-4716-9f2b-6e94a8279a83 0445a21c3396fc5666a409f292ea6b36 { 'aliquot_tag': 'ALQ_8ecb8133', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05874.MethArray.Red.Tbm C3L-05874 AML Methylation Array tumor_bone_marrow CPT0299880002 205555390164_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 6ee176b1-e8ae-4959-84d0-60244e41b02c f2cf08a05f2f41af75fbf4b236cdf8ad { 'aliquot_tag': 'ALQ_8ecb8133', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05874.miRNA-Seq.Tbm C3L-05874 AML miRNA-Seq tumor_bone_marrow CPT0299900002 210331_UNC31-K00269_0297_AHKCFKBBXY_CCAACA_S46_L008_R1_001.unaln.bam 157455040 BAM unaligned CPTAC3 6cc0eb5a-6bdd-46cc-9d0d-be6c0313bcb9 133e36e3ff1fade413eb4ed89ac56887 { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05874.miRNA-Seq.Tbm.hg38 C3L-05874 AML miRNA-Seq tumor_bone_marrow CPT0299900002 66fb0711-c5e3-4ee7-a844-dcae58352448_mirnaseq_gdc_realn.bam 165903159 BAM harmonized CPTAC3 313f7a94-9ade-4c79-86d3-1a482c278d2e 3f9b57f9c2e3e7d335f032a731cdab4d { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05874.RNA-Seq.chimeric.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.chimeric.gdc_realn.bam 90498124 BAM chimeric harmonized CPTAC3 33797b79-e23c-43f8-9fe7-4750e6e764db 834a2bb21bfac2924ef8bed4f4f57807 { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05874.RNA-Seq.genomic.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.genomic.gdc_realn.bam 7951765513 BAM genomic harmonized CPTAC3 cdf08254-c318-45e0-9855-50bc78255ce4 b9d5a49eb7b9fd0f9a5cfda55cef4729 { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05874.RNA-Seq.R1_L008.Tbm C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 210319_UNC31-K00269_0296_AHKT37BBXY_TCATCCTT-AGCGAGCT_S32_L008_R1_001.fastq.gz 3895130520 FASTQ R1_L008 unaligned CPTAC3 724820b5-bfc7-4b08-b081-3e10460c82b3 93270fca04acfc949828d906b6266215 { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05874.RNA-Seq.R2_L008.Tbm C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 210319_UNC31-K00269_0296_AHKT37BBXY_TCATCCTT-AGCGAGCT_S32_L008_R2_001.fastq.gz 4072714684 FASTQ R2_L008 unaligned CPTAC3 d76b214f-5d5f-4269-b983-96f4841a00ec a25d3a8458db3bd884ef5031c44a787e { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05874.RNA-Seq.transcriptome.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.transcriptome.gdc_realn.bam 7482243214 BAM transcriptome harmonized CPTAC3 936484f8-671e-4fdc-b2a8-d67ded4c1299 c2671d8eb08e0c398f63f8e6e1ed6d80 { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05874.RNA-Seq.chimeric.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.chimeric.gdc_realn.bam 90498124 BAM chimeric harmonized CPTAC3 6ecbe16e-ea94-4c20-8dcd-4fd2b1f734a7 834a2bb21bfac2924ef8bed4f4f57807 { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05874.RNA-Seq.genomic.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.genomic.gdc_realn.bam 7951765513 BAM genomic harmonized CPTAC3 627dc136-b579-4f70-8f16-0c27da00d7ad b9d5a49eb7b9fd0f9a5cfda55cef4729 { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05874.RNA-Seq.R1_L008.Tbm C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 210319_UNC31-K00269_0296_AHKT37BBXY_TCATCCTT-AGCGAGCT_S32_L008_R1_001.fastq.gz 3895130520 FASTQ R1_L008 unaligned CPTAC3 724820b5-bfc7-4b08-b081-3e10460c82b3 93270fca04acfc949828d906b6266215 { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-05874.RNA-Seq.R2_L008.Tbm C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 210319_UNC31-K00269_0296_AHKT37BBXY_TCATCCTT-AGCGAGCT_S32_L008_R2_001.fastq.gz 4072714684 FASTQ R2_L008 unaligned CPTAC3 d76b214f-5d5f-4269-b983-96f4841a00ec a25d3a8458db3bd884ef5031c44a787e { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-05874.RNA-Seq.transcriptome.Tbm.hg38 C3L-05874 AML RNA-Seq tumor_bone_marrow CPT0299900002 2d45038a-55c5-4e34-9a63-2fea0d18e273.rna_seq.transcriptome.gdc_realn.bam 7482243214 BAM transcriptome harmonized CPTAC3 534d3605-15c3-4a49-a878-ed77087e1b53 c2671d8eb08e0c398f63f8e6e1ed6d80 { 'aliquot_tag': 'ALQ_75e71957', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05874.WGS.Tbm C3L-05874 AML WGS tumor_bone_marrow CPT0299880002 CPT0299880002.WholeGenome.RP-2158.bam 50602071277 BAM aligned CPTAC3 0c5b5cca-6d59-42d8-8eb7-5379440ad7e6 12b45d1508dc3973de051ac1ada0b96b { 'aliquot_tag': 'ALQ_8ecb8133', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05874.WGS.Tbm.hg38 C3L-05874 AML WGS tumor_bone_marrow CPT0299880002 3e8f3526-12f3-44d1-8385-aacd38c7e4d5_wgs_gdc_realn.bam 147517587331 BAM harmonized CPTAC3 8acf8a3b-8004-409a-a389-dc34d3e47e05 c175c02cc3834568c4ff187e07c59522 { 'aliquot_tag': 'ALQ_8ecb8133', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05874.WXS.Nbc C3L-05874 AML WXS buccal_normal CPT0299870002 CPT0299870002.WholeExome.RP-1303.bam 28940847826 BAM aligned CPTAC3 028485ff-d935-43f4-a07c-3a9ed446fd23 2772fd41ffcddee068cee90628275d48 { 'aliquot_tag': 'ALQ_c9b16e2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05874.WXS.Nbc.hg38 C3L-05874 AML WXS buccal_normal CPT0299870002 8002982b-3c17-4e2d-8b6a-eaeb500b3445_wxs_gdc_realn.bam 38857621750 BAM harmonized CPTAC3 7b352b43-0631-44ca-89b8-7501b3514e1b fa326497f32158f5afe7426c9c44ac64 { 'aliquot_tag': 'ALQ_c9b16e2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05874.WXS.Tbm C3L-05874 AML WXS tumor_bone_marrow CPT0299880002 CPT0299880002.WholeExome.RP-1303.bam 26553985048 BAM aligned CPTAC3 c38af2a5-a196-4a6f-8d47-5b3f4a3e58f0 1e633c9d0658c1c5263f1f5351e6c032 { 'aliquot_tag': 'ALQ_8ecb8133', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05874.WXS.Tbm.hg38 C3L-05874 AML WXS tumor_bone_marrow CPT0299880002 3e8f3526-12f3-44d1-8385-aacd38c7e4d5_wxs_gdc_realn.bam 36548244942 BAM harmonized CPTAC3 2549eabf-0aad-43b3-995c-5b77eab0e11c 7a1f9c7114ca7a852fa85eff3f8b1b1e { 'aliquot_tag': 'ALQ_8ecb8133', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05877.MethArray.Green.Tbm C3L-05877 AML Methylation Array tumor_bone_marrow CPT0300410002 205555390176_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e157f8f5-3784-44d7-a5a8-11ec582a405b 7273cbb5c1d2d3e94c48dd569b68a585 { 'aliquot_tag': 'ALQ_69b56982', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05877.MethArray.Red.Tbm C3L-05877 AML Methylation Array tumor_bone_marrow CPT0300410002 205555390176_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 fc79f61e-eafb-4880-8663-cb0e7f374a33 65183cf660f9d89b18e01af8d998a257 { 'aliquot_tag': 'ALQ_69b56982', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05877.miRNA-Seq.Tbm C3L-05877 AML miRNA-Seq tumor_bone_marrow CPT0300420002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTGAAA_S16_L001_R1_001.unaln.bam 538259579 BAM unaligned CPTAC3 d985a552-5580-4618-bf91-a8c489e822c3 dde7e98dbe2b5d47c676778ec543dc89 { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05877.RNA-Seq.chimeric.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 22976012-c45b-42ee-acc5-7e7ffa5c3099.rna_seq.chimeric.gdc_realn.bam 95914771 BAM chimeric harmonized CPTAC3 d0f63617-c9dd-452d-a5ef-443ea04276dd bb7a6012fb7eba3ba30708f01c6c7724 { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05877.RNA-Seq.genomic.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 22976012-c45b-42ee-acc5-7e7ffa5c3099.rna_seq.genomic.gdc_realn.bam 8484885432 BAM genomic harmonized CPTAC3 66a79ffe-e234-4301-a01f-ad7a90a01ac0 94b2c13f4ba41a72215f0ed34455d39f { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05877.RNA-Seq.R1_L004.Tbm C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 210319_UNC31-K00269_0296_AHKT37BBXY_TTCCTGTT-AGTATCTT_S16_L004_R1_001.fastq.gz 4322192784 FASTQ R1_L004 unaligned CPTAC3 0f08c20b-f789-48d8-9a67-35b47b3e3930 93226a1a4e570826af5be793a626af83 { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05877.RNA-Seq.R2_L004.Tbm C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 210319_UNC31-K00269_0296_AHKT37BBXY_TTCCTGTT-AGTATCTT_S16_L004_R2_001.fastq.gz 4568649533 FASTQ R2_L004 unaligned CPTAC3 d80143d6-e2d1-4d5a-9c37-43b0e76a67c0 394665b594096905233756679677aff8 { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05877.RNA-Seq.transcriptome.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 22976012-c45b-42ee-acc5-7e7ffa5c3099.rna_seq.transcriptome.gdc_realn.bam 9821727894 BAM transcriptome harmonized CPTAC3 6328b5af-c61d-46c9-a93d-6272ec6903fc d8adcb4de52ae14c0668fe4196f83fae { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05877.miRNA-Seq.Tbm.hg38 C3L-05877 AML miRNA-Seq tumor_bone_marrow CPT0300420002 b145f9ab-8a81-443b-a1b2-47cafef2afc1_mirnaseq_gdc_realn.bam 598586366 BAM harmonized CPTAC3 3a3d70e1-02b0-4b5b-b620-bf1c1a42b9fb 10a0bf31b3382dec61a0d27392d86682 { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05877.RNA-Seq.chimeric.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 838739fd-b3a4-43b1-9eb4-5468fa396041.rna_seq.chimeric.gdc_realn.bam 95914183 BAM chimeric harmonized CPTAC3 c6b46c3b-f883-40e6-b36c-17799430d838 f460290a35bdca16a7e234c97e78aab7 { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05877.RNA-Seq.genomic.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 838739fd-b3a4-43b1-9eb4-5468fa396041.rna_seq.genomic.gdc_realn.bam 8493804982 BAM genomic harmonized CPTAC3 811187db-7a30-4df9-8bc0-063fd9718ba5 ed717222ca6dffc974ad8c80059f49b2 { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05877.RNA-Seq.R1_L004.Tbm C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 210319_UNC31-K00269_0296_AHKT37BBXY_TTCCTGTT-AGTATCTT_S16_L004_R1_001.fastq.gz 4322192784 FASTQ R1_L004 unaligned CPTAC3 0f08c20b-f789-48d8-9a67-35b47b3e3930 93226a1a4e570826af5be793a626af83 { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-05877.RNA-Seq.R2_L004.Tbm C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 210319_UNC31-K00269_0296_AHKT37BBXY_TTCCTGTT-AGTATCTT_S16_L004_R2_001.fastq.gz 4568649533 FASTQ R2_L004 unaligned CPTAC3 d80143d6-e2d1-4d5a-9c37-43b0e76a67c0 394665b594096905233756679677aff8 { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-05877.RNA-Seq.transcriptome.Tbm.hg38 C3L-05877 AML RNA-Seq tumor_bone_marrow CPT0300420002 838739fd-b3a4-43b1-9eb4-5468fa396041.rna_seq.transcriptome.gdc_realn.bam 11111923760 BAM transcriptome harmonized CPTAC3 97871066-6a83-4d6f-823f-17c4229419f8 3c6765f0176926c7e0d856a1072d1bab { 'aliquot_tag': 'ALQ_2e151352', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05877.WGS.Nbc C3L-05877 AML WGS buccal_normal CPT0300380003 CPT0300380003.WholeGenome.RP-2158.bam 73278017097 BAM aligned CPTAC3 392b0e5a-bfad-4790-83f1-b7d6c55783b0 4284588575c6f4fcffc6eef05e4637b2 { 'aliquot_tag': 'ALQ_ea70bdd', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05877.WGS.Nbc.hg38 C3L-05877 AML WGS buccal_normal CPT0300380003 ee92a2b9-206b-4e8b-9c75-a72c86ff6240_wgs_gdc_realn.bam 237016842730 BAM harmonized CPTAC3 0dcc0454-f17b-4951-9437-ff2891e22852 d952a5e4dad47940118d15c236d64ed9 { 'aliquot_tag': 'ALQ_ea70bdd', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05877.WGS.Tbm C3L-05877 AML WGS tumor_bone_marrow CPT0300410002 CPT0300410002.WholeGenome.RP-2158.bam 45583207743 BAM aligned CPTAC3 e5b2f66c-ede3-4385-8747-3ff8dbfa7917 a39f6ae085feb0c1b9dff73140697a73 { 'aliquot_tag': 'ALQ_69b56982', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05877.WGS.Tbm.hg38 C3L-05877 AML WGS tumor_bone_marrow CPT0300410002 96ae1bdd-bc75-430b-b6b3-46756c4db3ed_wgs_gdc_realn.bam 130777638996 BAM harmonized CPTAC3 b158bbad-df67-4297-970f-9186bbc0a2bd db1c733e0bf65c1a1927d7303fbc8213 { 'aliquot_tag': 'ALQ_69b56982', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05877.WXS.Nbc C3L-05877 AML WXS buccal_normal CPT0300380003 CPT0300380003.WholeExome.RP-1303.bam 23920575621 BAM aligned CPTAC3 02882d65-c171-4e21-aed0-44c7c82a6008 bff7edb67703573b0b77b9e5c6ec3f20 { 'aliquot_tag': 'ALQ_ea70bdd', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05877.WXS.Nbc.hg38 C3L-05877 AML WXS buccal_normal CPT0300380003 ee92a2b9-206b-4e8b-9c75-a72c86ff6240_wxs_gdc_realn.bam 33591352662 BAM harmonized CPTAC3 ab66af5d-bf06-4441-ab13-d8941065731f ee5598b6bc871bc093356e595ad1704c { 'aliquot_tag': 'ALQ_ea70bdd', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05877.WXS.Tbm C3L-05877 AML WXS tumor_bone_marrow CPT0300410002 CPT0300410002.WholeExome.RP-1303.bam 25233163926 BAM aligned CPTAC3 f80cf357-9169-43ef-980d-4201e32386bd e2b258fd6c41f95da4e318faea47aef7 { 'aliquot_tag': 'ALQ_69b56982', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05877.WXS.Tbm.hg38 C3L-05877 AML WXS tumor_bone_marrow CPT0300410002 96ae1bdd-bc75-430b-b6b3-46756c4db3ed_wxs_gdc_realn.bam 34726300762 BAM harmonized CPTAC3 e37b97d2-8631-476e-9356-94c4ed5a2785 37924b3fc45cb0257b150ab5756e6a9d { 'aliquot_tag': 'ALQ_69b56982', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05880.MethArray.Green.Tbm C3L-05880 AML Methylation Array tumor_bone_marrow CPT0343660002 205705520128_R05C01_Grn.idat 13677886 IDAT Green NA CPTAC3 db487083-b57b-44bd-863a-0c0afc2c8766 b80a5e94471a21e81a5ca16352d3e8be { 'aliquot_tag': 'ALQ_23ff00fe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05880.MethArray.Red.Tbm C3L-05880 AML Methylation Array tumor_bone_marrow CPT0343660002 205705520128_R05C01_Red.idat 13677886 IDAT Red NA CPTAC3 8a3bc2a3-a42f-4abc-bfba-1cc5fea9f305 811fb81758674757f75e43b0e4f18b33 { 'aliquot_tag': 'ALQ_23ff00fe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05880.miRNA-Seq.Tpb C3L-05880 AML miRNA-Seq tumor_peripheral_blood CPT0343710002 220125_UNC32-K00270_0311_AHMNYYBBXY_TAGCTT_S41_L002_R1_001.unaln.bam 249996798 BAM unaligned CPTAC3 c0eb52b8-a6cf-47eb-aa2a-ceb62c501f44 1db5139b3fb96e3cea45b29e9c25b656 { 'aliquot_tag': 'ALQ_5a830f4b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05880.RNA-Seq.R1_L001.Tpb C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCCAACGC-TTGGACTT_S4_L001_R1_001.fastq.gz 4087361180 FASTQ R1_L001 unaligned CPTAC3 b341d34c-1191-4519-a1ff-d26521ec8bfd 8e103f659385c88c2c189ebbab40e313 { 'aliquot_tag': 'ALQ_5a830f4b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05880.RNA-Seq.R2_L001.Tpb C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCCAACGC-TTGGACTT_S4_L001_R2_001.fastq.gz 4475045150 FASTQ R2_L001 unaligned CPTAC3 cbbd3158-1f70-48a7-8e50-fda147c3d932 d372ecf04918026a82aa1d458bba9f0e { 'aliquot_tag': 'ALQ_5a830f4b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05880.miRNA-Seq.Tpb.hg38 C3L-05880 AML miRNA-Seq tumor_peripheral_blood CPT0343710002 e94c6558-3883-4094-92e7-ddf7d0c1be51_mirnaseq_gdc_realn.bam 274397735 BAM harmonized CPTAC3 e6ddd38d-286a-4403-9598-82592ed346bd 8d22ecc967fd8204e88f35ee29a195ab { 'aliquot_tag': 'ALQ_5a830f4b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05880.RNA-Seq.chimeric.Tpb.hg38 C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 8ce27578-ab87-4022-978d-49d7c73b7efd.rna_seq.chimeric.gdc_realn.bam 562165773 BAM chimeric harmonized CPTAC3 3e030377-1cda-4d8a-8aec-02f2e2bceeca 765063a50b9d90ea286aa0c452027fad { 'aliquot_tag': 'ALQ_5a830f4b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05880.RNA-Seq.genomic.Tpb.hg38 C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 8ce27578-ab87-4022-978d-49d7c73b7efd.rna_seq.genomic.gdc_realn.bam 8383882658 BAM genomic harmonized CPTAC3 58d498d3-e490-4480-80c7-e26b409670e0 851dd42e0c3136ca4c74031386f32ce8 { 'aliquot_tag': 'ALQ_5a830f4b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05880.RNA-Seq.R1_L001.Tpb C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCCAACGC-TTGGACTT_S4_L001_R1_001.fastq.gz 4087361180 FASTQ R1_L001 unaligned CPTAC3 b341d34c-1191-4519-a1ff-d26521ec8bfd 8e103f659385c88c2c189ebbab40e313 { 'aliquot_tag': 'ALQ_5a830f4b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L001' } +C3L-05880.RNA-Seq.R2_L001.Tpb C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCCAACGC-TTGGACTT_S4_L001_R2_001.fastq.gz 4475045150 FASTQ R2_L001 unaligned CPTAC3 cbbd3158-1f70-48a7-8e50-fda147c3d932 d372ecf04918026a82aa1d458bba9f0e { 'aliquot_tag': 'ALQ_5a830f4b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L001' } +C3L-05880.RNA-Seq.transcriptome.Tpb.hg38 C3L-05880 AML RNA-Seq tumor_peripheral_blood CPT0343710002 8ce27578-ab87-4022-978d-49d7c73b7efd.rna_seq.transcriptome.gdc_realn.bam 8431042806 BAM transcriptome harmonized CPTAC3 6b51d865-9099-4514-920b-d0183b4755f6 5af10675be88a7026e513b61e4c64642 { 'aliquot_tag': 'ALQ_5a830f4b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05880.WGS.Nbc C3L-05880 AML WGS buccal_normal CPT0343630001 CPT0343630001.WholeGenome.RP-2158.bam 45938618882 BAM aligned CPTAC3 e97060ef-1878-491a-8cbf-ec4cbaf6ea17 0385e20bb144f68f4f93172ed57a4233 { 'aliquot_tag': 'ALQ_7216de34', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05880.WGS.Nbc.hg38 C3L-05880 AML WGS buccal_normal CPT0343630001 23ed73e9-9a8f-4297-bf01-ca3b66fd7826_wgs_gdc_realn.bam 137911406384 BAM harmonized CPTAC3 a4668566-e4f8-46a6-af3b-1879baa49290 1639cd6f1c5e443f97f9fde0f0953380 { 'aliquot_tag': 'ALQ_7216de34', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05880.WGS.Tbm C3L-05880 AML WGS tumor_bone_marrow CPT0343660002 CPT0343660002.WholeGenome.RP-2158.bam 43608083287 BAM aligned CPTAC3 5efce9a8-9fe1-4e06-b4cb-03cbb9316d37 706b725b75681bb85433f4f0345b3d38 { 'aliquot_tag': 'ALQ_23ff00fe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05880.WGS.Tbm.hg38 C3L-05880 AML WGS tumor_bone_marrow CPT0343660002 0ba49a29-a850-46e3-8379-1375fe76413d_wgs_gdc_realn.bam 132428942056 BAM harmonized CPTAC3 bf8ecffe-50b1-4149-9c3e-294b32a0e7a3 4699499528d125cd7c6b9d0f31e87b80 { 'aliquot_tag': 'ALQ_23ff00fe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05880.WXS.Nbc C3L-05880 AML WXS buccal_normal CPT0343630001 CPT0343630001.WholeExome.RP-1303.bam 28024817314 BAM aligned CPTAC3 93137e3b-52cb-4c56-96a9-022e90a326cd 34a6a2b7f567c2f7eb80e0ea0048a1d1 { 'aliquot_tag': 'ALQ_7216de34', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05880.WXS.Nbc.hg38 C3L-05880 AML WXS buccal_normal CPT0343630001 23ed73e9-9a8f-4297-bf01-ca3b66fd7826_wxs_gdc_realn.bam 111884501127 BAM harmonized CPTAC3 7d7b0de8-3536-4785-af8d-c428b67982f7 ff24cba4c7c5839a0e28da74d4bdfd27 { 'aliquot_tag': 'ALQ_7216de34', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05880.WXS.Tbm C3L-05880 AML WXS tumor_bone_marrow CPT0343660002 CPT0343660002.WholeExome.RP-1303.bam 25354727637 BAM aligned CPTAC3 ade04ecf-df99-462e-9be4-483b2676fbd1 f4726ac141683ab7a3ba63e72c9abb90 { 'aliquot_tag': 'ALQ_23ff00fe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05880.WXS.Tbm.hg38 C3L-05880 AML WXS tumor_bone_marrow CPT0343660002 0ba49a29-a850-46e3-8379-1375fe76413d_wxs_gdc_realn.bam 35030256301 BAM harmonized CPTAC3 5f8c7af6-b9f4-4da1-a2a4-550334839d0c e803650a6b8db4dca6e7b8215ab4f3d3 { 'aliquot_tag': 'ALQ_23ff00fe', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05884.MethArray.Green.Tbm C3L-05884 AML Methylation Array tumor_bone_marrow CPT0416170002 205555390176_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 26062768-13ac-4540-bb9e-0770d6cd6e16 2eaa685a4e19e074ce676dd844dd0463 { 'aliquot_tag': 'ALQ_7d2355fc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05884.MethArray.Red.Tbm C3L-05884 AML Methylation Array tumor_bone_marrow CPT0416170002 205555390176_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 554c6733-71c7-413e-8e0e-e41933d379fb 649eeceefe86fd80ce3d50d5dd1348fb { 'aliquot_tag': 'ALQ_7d2355fc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05884.miRNA-Seq.Tbm C3L-05884 AML miRNA-Seq tumor_bone_marrow CPT0410270002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAAAAG_S25_L005_R1_001.unaln.bam 259279400 BAM unaligned CPTAC3 ece75779-0591-493a-a008-b0e44b5c8801 dd85e637834aa64e8c81ec1e55e113d5 { 'aliquot_tag': 'ALQ_98671268', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05884.RNA-Seq.R1_L002.Tbm C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 210708_UNC32-K00270_0290_BHLLHHBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3984639573 FASTQ R1_L002 unaligned CPTAC3 68dcca5d-e353-4166-a863-6f0b745448c0 62939176466561a117f3d737114960c9 { 'aliquot_tag': 'ALQ_98671268', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05884.RNA-Seq.R2_L002.Tbm C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 210708_UNC32-K00270_0290_BHLLHHBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 4205384530 FASTQ R2_L002 unaligned CPTAC3 c8974040-12ad-4bea-901a-dfa36fb0c963 31c6a9ad23024234e290ae11e0bc287e { 'aliquot_tag': 'ALQ_98671268', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05884.miRNA-Seq.Tbm.hg38 C3L-05884 AML miRNA-Seq tumor_bone_marrow CPT0410270002 d266b58a-aaf7-483e-ba4c-f58f03fd16b1_mirnaseq_gdc_realn.bam 267008417 BAM harmonized CPTAC3 515661e9-b67c-40a9-9b07-60d7bb0691a6 6305f95994af72e9ecfc5157f24b245f { 'aliquot_tag': 'ALQ_98671268', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05884.RNA-Seq.chimeric.Tbm.hg38 C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 e1b87ce4-a5c9-4560-983b-d4f38404b6ec.rna_seq.chimeric.gdc_realn.bam 274586316 BAM chimeric harmonized CPTAC3 f7cd5186-e552-4888-9335-546fa57300a4 a7ef4ac5b4d89b84ad5c03ba7ba989d7 { 'aliquot_tag': 'ALQ_98671268', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05884.RNA-Seq.genomic.Tbm.hg38 C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 e1b87ce4-a5c9-4560-983b-d4f38404b6ec.rna_seq.genomic.gdc_realn.bam 8114158812 BAM genomic harmonized CPTAC3 ca2d8f30-3dd9-4088-a068-75cde7b04001 776f36bbff6c7587ad3f9d4dd30cc411 { 'aliquot_tag': 'ALQ_98671268', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05884.RNA-Seq.R1_L002.Tbm C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 210708_UNC32-K00270_0290_BHLLHHBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3984639573 FASTQ R1_L002 unaligned CPTAC3 68dcca5d-e353-4166-a863-6f0b745448c0 62939176466561a117f3d737114960c9 { 'aliquot_tag': 'ALQ_98671268', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-05884.RNA-Seq.R2_L002.Tbm C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 210708_UNC32-K00270_0290_BHLLHHBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 4205384530 FASTQ R2_L002 unaligned CPTAC3 c8974040-12ad-4bea-901a-dfa36fb0c963 31c6a9ad23024234e290ae11e0bc287e { 'aliquot_tag': 'ALQ_98671268', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-05884.RNA-Seq.transcriptome.Tbm.hg38 C3L-05884 AML RNA-Seq tumor_bone_marrow CPT0410270002 e1b87ce4-a5c9-4560-983b-d4f38404b6ec.rna_seq.transcriptome.gdc_realn.bam 9025722159 BAM transcriptome harmonized CPTAC3 5dd70628-a742-4ef2-a3c2-cd3db83a1719 da41fd6496c0e045f34361a2344b7f64 { 'aliquot_tag': 'ALQ_98671268', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05884.WGS.Nbc C3L-05884 AML WGS buccal_normal CPT0410240001 CPT0410240001.WholeGenome.RP-2158.bam 52970046234 BAM aligned CPTAC3 ac4a2f44-2a60-414f-ad33-979c9b693cc7 b0804b58c63f738cb19d34a12869189a { 'aliquot_tag': 'ALQ_46ce3902', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05884.WGS.Nbc.hg38 C3L-05884 AML WGS buccal_normal CPT0410240001 5cf52825-963d-462b-b1a5-d9f20ddd0070_wgs_gdc_realn.bam 157604592406 BAM harmonized CPTAC3 0872d590-4c7c-4270-879e-d60630f04982 36404f2eb4000f5b9375a5c9e24c54c0 { 'aliquot_tag': 'ALQ_46ce3902', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05884.WGS.Tbm C3L-05884 AML WGS tumor_bone_marrow CPT0416170002 CPT0416170002.WholeGenome.RP-2158.bam 52579579721 BAM aligned CPTAC3 6eee2d82-7cd4-4b6e-8721-2b9296770ae1 8bf8b7629f17525205c23073950630f5 { 'aliquot_tag': 'ALQ_7d2355fc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05884.WGS.Tbm.hg38 C3L-05884 AML WGS tumor_bone_marrow CPT0416170002 7ef878e6-9ca3-40d7-9948-5af073b483f5_wgs_gdc_realn.bam 157014991953 BAM harmonized CPTAC3 766dc870-eef3-4df7-88ef-16e5b7950943 2b276f0b6b03b420e43e60d07a985677 { 'aliquot_tag': 'ALQ_7d2355fc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05884.WXS.Nbc C3L-05884 AML WXS buccal_normal CPT0410240001 CPT0410240001.WholeExome.RP-1303.bam 34539110903 BAM aligned CPTAC3 297d0f49-87d8-4d49-8009-ed43f5060936 73fadc7f34b6dc123efda1c52ceb0a82 { 'aliquot_tag': 'ALQ_46ce3902', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05884.WXS.Nbc.hg38 C3L-05884 AML WXS buccal_normal CPT0410240001 5cf52825-963d-462b-b1a5-d9f20ddd0070_wxs_gdc_realn.bam 47895435122 BAM harmonized CPTAC3 16ae679b-5354-4ed5-abe4-a1b9d49a4ffc db1fc0abfbbe7525f93371a3100e82f0 { 'aliquot_tag': 'ALQ_46ce3902', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05884.WXS.Tbm C3L-05884 AML WXS tumor_bone_marrow CPT0416170002 CPT0416170002.WholeExome.RP-1303.bam 21172512346 BAM aligned CPTAC3 fcd1719c-523a-4882-aee4-791ad923ae38 88553345bc46a1690edf868b29cb65a0 { 'aliquot_tag': 'ALQ_7d2355fc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05884.WXS.Tbm.hg38 C3L-05884 AML WXS tumor_bone_marrow CPT0416170002 7ef878e6-9ca3-40d7-9948-5af073b483f5_wxs_gdc_realn.bam 29114913369 BAM harmonized CPTAC3 53aff95c-11f2-407f-91cd-b594b0e4eed0 4312ad4496e9981125ad0c2b4b4afb5a { 'aliquot_tag': 'ALQ_7d2355fc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05887.MethArray.Green.Tbm C3L-05887 AML Methylation Array tumor_bone_marrow CPT0344020002 205555380130_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 8fa05f50-37b2-4976-bd96-19e88168416b f18a9c399b4cdc09565411f9024a59d4 { 'aliquot_tag': 'ALQ_c5817bad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05887.MethArray.Red.Tbm C3L-05887 AML Methylation Array tumor_bone_marrow CPT0344020002 205555380130_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 6c628ba7-fbc9-497c-b103-7a150597a42b 6a439e29d6db2bebddc0b902ba327f17 { 'aliquot_tag': 'ALQ_c5817bad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05887.miRNA-Seq.Tbm C3L-05887 AML miRNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATCACG_S18_L007_R1_001.unaln.bam 193470977 BAM unaligned CPTAC3 2d51281b-bc35-4ccb-bf8b-195d9ade30da 38860a635cf41ea7ec0ff2585fcd9278 { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05887.miRNA-Seq.Tbm.hg38 C3L-05887 AML miRNA-Seq tumor_bone_marrow CPT0344030002 9b149e38-d608-4826-a301-8b9a196f1afe_mirnaseq_gdc_realn.bam 216131313 BAM harmonized CPTAC3 90d8bca0-a5e8-4bf0-9fa1-caed8a536090 ce92fc22db59781456f3ff506bc7752a { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05887.RNA-Seq.chimeric.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 406e10b3-3e4d-430f-8ef0-8b2cfd9d7263.rna_seq.chimeric.gdc_realn.bam 177214452 BAM chimeric harmonized CPTAC3 afe81095-135c-4e3d-934f-1dde5f73b401 f25217426cb0dba9361ef6b659cca576 { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05887.RNA-Seq.genomic.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 406e10b3-3e4d-430f-8ef0-8b2cfd9d7263.rna_seq.genomic.gdc_realn.bam 8294685854 BAM genomic harmonized CPTAC3 81320521-9542-4930-9474-a46f7f79afcc 42b3fb591dfb36c4f7fd9632c332130a { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05887.RNA-Seq.R1_L003.Tbm C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC32-K00270_0278_AHL3YTBBXY_CCGCGGTT-AGCGCTAG_S10_L003_R1_001.fastq.gz 4098545183 FASTQ R1_L003 unaligned CPTAC3 69cc26b8-f6df-4410-85ad-9a0e45e0eed5 81b9de924ff1bb223452fff46a8e455a { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05887.RNA-Seq.R2_L003.Tbm C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC32-K00270_0278_AHL3YTBBXY_CCGCGGTT-AGCGCTAG_S10_L003_R2_001.fastq.gz 4435158903 FASTQ R2_L003 unaligned CPTAC3 e5b69001-5416-4cab-895c-b6bb1a523790 10ac98d658134219ef95ef5fcd6135c7 { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05887.RNA-Seq.transcriptome.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 406e10b3-3e4d-430f-8ef0-8b2cfd9d7263.rna_seq.transcriptome.gdc_realn.bam 7475674698 BAM transcriptome harmonized CPTAC3 bfcd2091-7676-48ee-9bb8-3015bc43e27c fbb86e715ba557793123a90210e93eb7 { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05887.RNA-Seq.chimeric.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 b2b1235b-cc88-4565-9b4e-3e3c61c97cc5.rna_seq.chimeric.gdc_realn.bam 177205301 BAM chimeric harmonized CPTAC3 9926bedc-dc36-4638-90a4-0128dd01e37a a4ca867a9073af76fbf8d96d29fd3702 { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05887.RNA-Seq.genomic.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 b2b1235b-cc88-4565-9b4e-3e3c61c97cc5.rna_seq.genomic.gdc_realn.bam 8302648692 BAM genomic harmonized CPTAC3 453d0933-20e4-49f2-bf23-58a8cee9ae66 85b144fe7c1e19a5b680913575270136 { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05887.RNA-Seq.R1_L003.Tbm C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC32-K00270_0278_AHL3YTBBXY_CCGCGGTT-AGCGCTAG_S10_L003_R1_001.fastq.gz 4098545183 FASTQ R1_L003 unaligned CPTAC3 69cc26b8-f6df-4410-85ad-9a0e45e0eed5 81b9de924ff1bb223452fff46a8e455a { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-05887.RNA-Seq.R2_L003.Tbm C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 210331_UNC32-K00270_0278_AHL3YTBBXY_CCGCGGTT-AGCGCTAG_S10_L003_R2_001.fastq.gz 4435158903 FASTQ R2_L003 unaligned CPTAC3 e5b69001-5416-4cab-895c-b6bb1a523790 10ac98d658134219ef95ef5fcd6135c7 { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-05887.RNA-Seq.transcriptome.Tbm.hg38 C3L-05887 AML RNA-Seq tumor_bone_marrow CPT0344030002 b2b1235b-cc88-4565-9b4e-3e3c61c97cc5.rna_seq.transcriptome.gdc_realn.bam 8518621754 BAM transcriptome harmonized CPTAC3 dac03f68-48de-4c24-ab45-ef73ba5aa881 7056c2fc95917d8e65ac4f3215e25664 { 'aliquot_tag': 'ALQ_f8e1521d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05887.WGS.Nbc C3L-05887 AML WGS buccal_normal CPT0343990003 CPT0343990003.WholeGenome.RP-2158.bam 59829704757 BAM aligned CPTAC3 aece0829-7aa7-4283-b47a-97f18923d4fb d04ce4119c61d4eb5d27013e08132225 { 'aliquot_tag': 'ALQ_27fe156c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05887.WGS.Nbc.hg38 C3L-05887 AML WGS buccal_normal CPT0343990003 e28e0b54-03a7-4cfb-b77b-447b8646961a_wgs_gdc_realn.bam 187159088869 BAM harmonized CPTAC3 dbebe5b3-751c-418b-92ca-7a2e95782be0 5065635ce4c5a9e009ecbc138cb83159 { 'aliquot_tag': 'ALQ_27fe156c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05887.WGS.Tbm C3L-05887 AML WGS tumor_bone_marrow CPT0344020002 CPT0344020002.WholeGenome.RP-2158.bam 55879978478 BAM aligned CPTAC3 c5d7acde-7e40-4e56-a7b5-9604704a1b6e db6f4bc762d8fa375f9607dcd90de010 { 'aliquot_tag': 'ALQ_c5817bad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05887.WGS.Tbm.hg38 C3L-05887 AML WGS tumor_bone_marrow CPT0344020002 236e12c7-1408-4460-acaa-69762ebc953a_wgs_gdc_realn.bam 155566422748 BAM harmonized CPTAC3 4e4e94e7-8082-469d-a621-8f506bead92f af151ea252421799aa36a264200d5f30 { 'aliquot_tag': 'ALQ_c5817bad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05887.WXS.Nbc C3L-05887 AML WXS buccal_normal CPT0343990003 CPT0343990003.WholeExome.RP-1303.bam 24906983293 BAM aligned CPTAC3 6549b58f-7999-48bd-a67f-44a333f9d559 2a231e89c8745bcb249d1bdf4a9ede82 { 'aliquot_tag': 'ALQ_27fe156c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05887.WXS.Nbc.hg38 C3L-05887 AML WXS buccal_normal CPT0343990003 e28e0b54-03a7-4cfb-b77b-447b8646961a_wxs_gdc_realn.bam 34770032401 BAM harmonized CPTAC3 b508e0fe-9f8a-4166-9bc8-70df9fac94df 2264cd40a23b775f56368219abfa7a67 { 'aliquot_tag': 'ALQ_27fe156c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05887.WXS.Tbm C3L-05887 AML WXS tumor_bone_marrow CPT0344020002 CPT0344020002.WholeExome.RP-1303.bam 23595760543 BAM aligned CPTAC3 d6906cac-a265-45e7-99ef-fda4278f7596 c9f3392331ddc3c0027ed0684f3cfe86 { 'aliquot_tag': 'ALQ_c5817bad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05887.WXS.Tbm.hg38 C3L-05887 AML WXS tumor_bone_marrow CPT0344020002 236e12c7-1408-4460-acaa-69762ebc953a_wxs_gdc_realn.bam 32462973279 BAM harmonized CPTAC3 f7cf2849-de68-4c42-bb9c-30885885427c 133bc384fe440b5811ec19a1bffb3138 { 'aliquot_tag': 'ALQ_c5817bad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05888.MethArray.Green.Tbm C3L-05888 AML Methylation Array tumor_bone_marrow CPT0344130001 205555390118_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 93548594-151d-4fe5-a200-5d4dbaa21bc1 52d275c4d6579b22cc0f27e06d3b01f0 { 'aliquot_tag': 'ALQ_aab4d002', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05888.MethArray.Red.Tbm C3L-05888 AML Methylation Array tumor_bone_marrow CPT0344130001 205555390118_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 c5dcb4df-4818-4a13-9820-a4e03d5eb965 ca748f441f98f11646ecf22b88eb3190 { 'aliquot_tag': 'ALQ_aab4d002', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05888.miRNA-Seq.Tbm C3L-05888 AML miRNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC31-K00269_0297_AHKCFKBBXY_CGATGT_S21_L007_R1_001.unaln.bam 107475845 BAM unaligned CPTAC3 a9f21010-4951-4bcd-a908-3fa8d3372c06 4c1993b198ba4c93a1934fb022c4aee8 { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05888.miRNA-Seq.Tbm C3L-05888 AML miRNA-Seq tumor_bone_marrow CPT0344140002 210817_UNC31-K00269_0302_AHLCTHBBXY_CGATGT_S27_L003_R1_001.unaln.bam 47475062 BAM unaligned CPTAC3 7ae09ad9-91b7-4dca-96bb-73a58d23a637 7d507f10b8460b2df0c9cf931bf2a363 { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05888.RNA-Seq.chimeric.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 c7cc36af-49e9-47fb-85fa-fcf2a804a669.rna_seq.chimeric.gdc_realn.bam 98702459 BAM chimeric harmonized CPTAC3 2597a6ee-23e3-420c-8b39-3dae8c92af60 696bb1fa38f6355a2727689122122592 { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05888.RNA-Seq.genomic.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 c7cc36af-49e9-47fb-85fa-fcf2a804a669.rna_seq.genomic.gdc_realn.bam 9099287070 BAM genomic harmonized CPTAC3 fbecd1d0-401e-4062-9cc2-12a4ede2d9e4 91ce9195baa7f2fffb2c3db2ffafda4a { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05888.RNA-Seq.R1_L003.Tbm C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R1_001.fastq.gz 4554756978 FASTQ R1_L003 unaligned CPTAC3 7cdc741d-0a64-4e81-938a-cc4297d7cc3d 4d9f4f4c5d6fd2933764191b6e9d0b46 { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05888.RNA-Seq.R2_L003.Tbm C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R2_001.fastq.gz 4720793096 FASTQ R2_L003 unaligned CPTAC3 0b44d08b-a40e-42d2-a682-ace4760bc581 4c93ac8f4e41ad86da0c6d0966149b21 { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05888.RNA-Seq.transcriptome.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 c7cc36af-49e9-47fb-85fa-fcf2a804a669.rna_seq.transcriptome.gdc_realn.bam 9429674138 BAM transcriptome harmonized CPTAC3 86c0c7d8-1c68-4608-92a4-f4481ed2ae6d ca01b2ce167d5cc34d466649e5837821 { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05888.miRNA-Seq.Tbm.hg38 C3L-05888 AML miRNA-Seq tumor_bone_marrow CPT0344140002 9f6aa56e-d054-4626-ab28-d613470fb235_mirnaseq_gdc_realn.bam 176929130 BAM harmonized CPTAC3 5b9cb0d5-33f9-4e82-bbbc-54262cf588db f1444b2ccd0d6451d9c36577d96f3e12 { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05888.RNA-Seq.chimeric.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 69d1381d-9ab6-4546-8710-fdf303921b16.rna_seq.chimeric.gdc_realn.bam 98687771 BAM chimeric harmonized CPTAC3 7b2e37dc-8e9b-4dc3-bb36-64b15babf26f e3f627078fc44999538fa3ebb1e02036 { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05888.RNA-Seq.genomic.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 69d1381d-9ab6-4546-8710-fdf303921b16.rna_seq.genomic.gdc_realn.bam 9110093573 BAM genomic harmonized CPTAC3 b33c67d4-8d2c-44c8-bcd4-b7bafe7ffc5c ea90f2ba15f800db972acea58ff404cc { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05888.RNA-Seq.R1_L003.Tbm C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R1_001.fastq.gz 4554756978 FASTQ R1_L003 unaligned CPTAC3 7cdc741d-0a64-4e81-938a-cc4297d7cc3d 4d9f4f4c5d6fd2933764191b6e9d0b46 { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-05888.RNA-Seq.R2_L003.Tbm C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R2_001.fastq.gz 4720793096 FASTQ R2_L003 unaligned CPTAC3 0b44d08b-a40e-42d2-a682-ace4760bc581 4c93ac8f4e41ad86da0c6d0966149b21 { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-05888.RNA-Seq.transcriptome.Tbm.hg38 C3L-05888 AML RNA-Seq tumor_bone_marrow CPT0344140002 69d1381d-9ab6-4546-8710-fdf303921b16.rna_seq.transcriptome.gdc_realn.bam 10909949892 BAM transcriptome harmonized CPTAC3 e8c92412-d60d-4cc5-9510-712b95caa8eb 22090b72327e81cadf8159c9360c5c1a { 'aliquot_tag': 'ALQ_819d5da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05888.WGS.Nbc C3L-05888 AML WGS buccal_normal CPT0344100003 CPT0344100003.WholeGenome.RP-2158.bam 56984619726 BAM aligned CPTAC3 b4903282-c4db-474e-9110-45a35b5b4b7c 85fc05e6e39ef5b064f5bedcab5e33fe { 'aliquot_tag': 'ALQ_31acbfe', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05888.WGS.Nbc.hg38 C3L-05888 AML WGS buccal_normal CPT0344100003 5aa5467c-5b5b-4942-9207-8575275e8d48_wgs_gdc_realn.bam 189300363263 BAM harmonized CPTAC3 6c758b3c-100a-4699-abc1-60fea47b26ce f9b3faf73e0fd62cd286dd42f5c593bc { 'aliquot_tag': 'ALQ_31acbfe', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05888.WGS.Tbm C3L-05888 AML WGS tumor_bone_marrow CPT0344130001 CPT0344130001.WholeGenome.RP-2158.bam 46138978226 BAM aligned CPTAC3 3b2c9000-4fbf-4f8f-be46-ddf9b76855aa 6306b769541ca36162c8e78e2c964931 { 'aliquot_tag': 'ALQ_aab4d002', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05888.WGS.Tbm.hg38 C3L-05888 AML WGS tumor_bone_marrow CPT0344130001 8fbfc62b-debd-49af-a0d1-0d1f015896af_wgs_gdc_realn.bam 134774007299 BAM harmonized CPTAC3 1d979e9f-8895-43ac-b026-82da5d317b60 c7c92377aae5fb976e6e6286dbf8d09b { 'aliquot_tag': 'ALQ_aab4d002', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05888.WXS.Nbc C3L-05888 AML WXS buccal_normal CPT0344100003 CPT0344100003.WholeExome.RP-1303.bam 22845821003 BAM aligned CPTAC3 4f3dd907-1eb6-4fb6-8186-8b580bd4b3ce 163f6b5e42d9142691bd94d1d92459fe { 'aliquot_tag': 'ALQ_31acbfe', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05888.WXS.Nbc.hg38 C3L-05888 AML WXS buccal_normal CPT0344100003 5aa5467c-5b5b-4942-9207-8575275e8d48_wxs_gdc_realn.bam 32066544877 BAM harmonized CPTAC3 e5726129-0842-47aa-a1c1-7b866092f086 c8032247874bbc98e5b4fe75810a9948 { 'aliquot_tag': 'ALQ_31acbfe', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05888.WXS.Tbm C3L-05888 AML WXS tumor_bone_marrow CPT0344130001 CPT0344130001.WholeExome.RP-1303.bam 41583876317 BAM aligned CPTAC3 b0507209-4ead-4d97-b1ef-e6037ded7471 bafbf9c2ba7f6532c678bccd4c402891 { 'aliquot_tag': 'ALQ_aab4d002', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05888.WXS.Tbm.hg38 C3L-05888 AML WXS tumor_bone_marrow CPT0344130001 8fbfc62b-debd-49af-a0d1-0d1f015896af_wxs_gdc_realn.bam 57687022271 BAM harmonized CPTAC3 8ac69ed6-88e0-4fc5-bb80-03714c5ae76a 009ba6d960a2ebacc99ef16030ff5619 { 'aliquot_tag': 'ALQ_aab4d002', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05889.MethArray.Green.Tbm C3L-05889 AML Methylation Array tumor_bone_marrow CPT0344240001 205555380155_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e3e36f13-811f-43e2-9902-1c2fc7694830 57a3bdcb111fe7dc8635f0bf00d18250 { 'aliquot_tag': 'ALQ_9e007ebc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05889.MethArray.Red.Tbm C3L-05889 AML Methylation Array tumor_bone_marrow CPT0344240001 205555380155_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 2587bcea-0a81-42a8-94ef-1c6575715cf1 83a924b53713edf27cce508d1734b21d { 'aliquot_tag': 'ALQ_9e007ebc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05889.miRNA-Seq.Tbm C3L-05889 AML miRNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC31-K00269_0297_AHKCFKBBXY_TTAGGC_S34_L007_R1_001.unaln.bam 214214974 BAM unaligned CPTAC3 e8b05e41-7a98-43c6-94ce-ca49bc2f83bd fedef13de375c31edcd2fd96fe2e624e { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05889.miRNA-Seq.Tbm.hg38 C3L-05889 AML miRNA-Seq tumor_bone_marrow CPT0344250004 1ffb7470-979b-4aed-a21a-464fd01c9e51_mirnaseq_gdc_realn.bam 241326816 BAM harmonized CPTAC3 99db0a4c-ffc9-4dfc-9846-df166800e32c 0e4a2caaf68a917a5d9f2ba6d2f9136d { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05889.RNA-Seq.chimeric.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 804a33b0-f76d-4f5e-a8fe-b8da0fc8936d.rna_seq.chimeric.gdc_realn.bam 115991646 BAM chimeric harmonized CPTAC3 5d618d26-749a-4486-9a2b-767328cf073b e491a22c4e9867374d1644f7281e5174 { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05889.RNA-Seq.genomic.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 804a33b0-f76d-4f5e-a8fe-b8da0fc8936d.rna_seq.genomic.gdc_realn.bam 8106147389 BAM genomic harmonized CPTAC3 7ab57d9b-905a-4832-9dc5-93c4d0de386f e4951302332e85f859ed8f5e40260c2e { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05889.RNA-Seq.R1_L003.Tbm C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC32-K00270_0278_AHL3YTBBXY_GGACTTGG-CGCAGACG_S11_L003_R1_001.fastq.gz 3804400016 FASTQ R1_L003 unaligned CPTAC3 334cd644-7914-4240-bced-4eb5fd48ef08 ffcbc782ad65a4cf154efc95b538d14a { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05889.RNA-Seq.R2_L003.Tbm C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC32-K00270_0278_AHL3YTBBXY_GGACTTGG-CGCAGACG_S11_L003_R2_001.fastq.gz 4114619098 FASTQ R2_L003 unaligned CPTAC3 a1e0bf27-ddd9-4980-adaa-d01489605419 425412d8183c7db1862c5689d26e956e { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05889.RNA-Seq.transcriptome.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 804a33b0-f76d-4f5e-a8fe-b8da0fc8936d.rna_seq.transcriptome.gdc_realn.bam 9215735861 BAM transcriptome harmonized CPTAC3 8a909f13-deaf-4655-8644-16a71021f705 697839783212e51150b510e4bf72530f { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05889.RNA-Seq.chimeric.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 04a546f5-fd08-4abe-b6b4-d5d539b5b026.rna_seq.chimeric.gdc_realn.bam 115997486 BAM chimeric harmonized CPTAC3 695a9b47-346e-4430-847e-34853535f1c1 4d31b557bb3ca1c653e5c8d3c08514b4 { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05889.RNA-Seq.genomic.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 04a546f5-fd08-4abe-b6b4-d5d539b5b026.rna_seq.genomic.gdc_realn.bam 8120164666 BAM genomic harmonized CPTAC3 783b6efd-67bd-4ad8-867c-c32baf366ccb d7f6a18d3c8471cde0fcbbf26974e3ef { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05889.RNA-Seq.R1_L003.Tbm C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC32-K00270_0278_AHL3YTBBXY_GGACTTGG-CGCAGACG_S11_L003_R1_001.fastq.gz 3804400016 FASTQ R1_L003 unaligned CPTAC3 334cd644-7914-4240-bced-4eb5fd48ef08 ffcbc782ad65a4cf154efc95b538d14a { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-05889.RNA-Seq.R2_L003.Tbm C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 210331_UNC32-K00270_0278_AHL3YTBBXY_GGACTTGG-CGCAGACG_S11_L003_R2_001.fastq.gz 4114619098 FASTQ R2_L003 unaligned CPTAC3 a1e0bf27-ddd9-4980-adaa-d01489605419 425412d8183c7db1862c5689d26e956e { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-05889.RNA-Seq.transcriptome.Tbm.hg38 C3L-05889 AML RNA-Seq tumor_bone_marrow CPT0344250004 04a546f5-fd08-4abe-b6b4-d5d539b5b026.rna_seq.transcriptome.gdc_realn.bam 10451315422 BAM transcriptome harmonized CPTAC3 85abfcd6-3476-4a75-85e8-5da8f9595e76 9de2b127c1eacf0d9759bccd80d56c6c { 'aliquot_tag': 'ALQ_d30aa383', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05889.WGS.Nbc C3L-05889 AML WGS buccal_normal CPT0344210003 CPT0344210003.WholeGenome.RP-2158.bam 53373503728 BAM aligned CPTAC3 91a40314-1818-417e-8631-3d97bc4049d5 2075e9393b0c60da259498ba6af2fc31 { 'aliquot_tag': 'ALQ_b8ee90e0', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05889.WGS.Nbc.hg38 C3L-05889 AML WGS buccal_normal CPT0344210003 9ac06998-0508-4229-bdbe-f688ad33ec5d_wgs_gdc_realn.bam 168276376890 BAM harmonized CPTAC3 da5f49f1-d186-45bd-915a-227329e8b998 3c7048f8246619385ccf4fb70717fcc7 { 'aliquot_tag': 'ALQ_b8ee90e0', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05889.WGS.Tbm C3L-05889 AML WGS tumor_bone_marrow CPT0344240001 CPT0344240001.WholeGenome.RP-2158.bam 49260815248 BAM aligned CPTAC3 6e682bdc-e761-493b-935f-3a033a66e4e3 c43091dc3fc201ada51c5e1e9a1a154a { 'aliquot_tag': 'ALQ_9e007ebc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05889.WGS.Tbm.hg38 C3L-05889 AML WGS tumor_bone_marrow CPT0344240001 91a44851-93b5-4106-a7d2-43bfd9061fdd_wgs_gdc_realn.bam 148289296675 BAM harmonized CPTAC3 75ed27c4-40d0-4082-9acf-9a19fd96b6df a7f547fb69ebdc034b0cdce310403293 { 'aliquot_tag': 'ALQ_9e007ebc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05889.WXS.Nbc C3L-05889 AML WXS buccal_normal CPT0344210003 CPT0344210003.WholeExome.RP-1303.bam 25660371616 BAM aligned CPTAC3 c6bb4c53-60d2-4c66-9b6d-9e793b6652ae 782fcd28bad6d618a1ae51bdb964f778 { 'aliquot_tag': 'ALQ_b8ee90e0', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05889.WXS.Nbc.hg38 C3L-05889 AML WXS buccal_normal CPT0344210003 9ac06998-0508-4229-bdbe-f688ad33ec5d_wxs_gdc_realn.bam 35893960347 BAM harmonized CPTAC3 a1688311-f146-494c-8e4e-49a7a3ded2e4 d2c428d6ee3c9c527fceb588daad7858 { 'aliquot_tag': 'ALQ_b8ee90e0', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05889.WXS.Tbm C3L-05889 AML WXS tumor_bone_marrow CPT0344240001 CPT0344240001.WholeExome.RP-1303.bam 21468382058 BAM aligned CPTAC3 266926a8-eda2-4aa2-a559-631925b01bca 9d56bd121a4ae5d3f61f6933380f1ff3 { 'aliquot_tag': 'ALQ_9e007ebc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05889.WXS.Tbm.hg38 C3L-05889 AML WXS tumor_bone_marrow CPT0344240001 91a44851-93b5-4106-a7d2-43bfd9061fdd_wxs_gdc_realn.bam 29487886716 BAM harmonized CPTAC3 1148e441-9e4c-4933-ba8c-a74739c59cd6 7ac156d68fb44b5be215558dddaf092b { 'aliquot_tag': 'ALQ_9e007ebc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05891.MethArray.Green.Tbm C3L-05891 AML Methylation Array tumor_bone_marrow CPT0344460002 205589730117_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 073251d4-e3c4-41ae-941a-8386f65f6735 8b84a440222022afd16a808ddca7c57b { 'aliquot_tag': 'ALQ_ab909f7b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05891.MethArray.Red.Tbm C3L-05891 AML Methylation Array tumor_bone_marrow CPT0344460002 205589730117_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 143c5c9d-7475-4f16-8129-32e94b67a53d ef7a2a24508e36df5609e73c8c0af62e { 'aliquot_tag': 'ALQ_ab909f7b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05891.miRNA-Seq.Tbm C3L-05891 AML miRNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC31-K00269_0297_AHKCFKBBXY_TGACCA_S33_L007_R1_001.unaln.bam 220925145 BAM unaligned CPTAC3 0e5ecc3c-e44b-49da-bcf8-9a11829da039 bb55518d3e0d13bd1bd8746356595807 { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05891.miRNA-Seq.Tbm.hg38 C3L-05891 AML miRNA-Seq tumor_bone_marrow CPT0344470002 75b9959e-f476-4e3a-aa59-8583cd6f8cd7_mirnaseq_gdc_realn.bam 237980277 BAM harmonized CPTAC3 ad97ba93-ab70-46a9-8554-66a4eefb5ed3 543c6b731257a212d1717453d3d92eb7 { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05891.RNA-Seq.chimeric.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.chimeric.gdc_realn.bam 125061288 BAM chimeric harmonized CPTAC3 a8cef24e-092a-4fcc-9979-3d4306a8cff4 0cb7133fa513ae27b96ecc77d6596346 { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05891.RNA-Seq.genomic.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.genomic.gdc_realn.bam 7414092079 BAM genomic harmonized CPTAC3 6e049b37-8534-4dd3-a4e1-a7cfb8348377 e9a9cc9874dd86fb9d3d5a81fcacee9d { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05891.RNA-Seq.R1_L003.Tbm C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC32-K00270_0278_AHL3YTBBXY_AAGTCCAA-TATGAGTA_S9_L003_R1_001.fastq.gz 3742419259 FASTQ R1_L003 unaligned CPTAC3 5e9c334a-180d-4890-820b-7cd231323293 f67afd01478bd9587214e63b7367f094 { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05891.RNA-Seq.R2_L003.Tbm C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC32-K00270_0278_AHL3YTBBXY_AAGTCCAA-TATGAGTA_S9_L003_R2_001.fastq.gz 3937724088 FASTQ R2_L003 unaligned CPTAC3 2f95d192-8eb5-40a0-9b25-678d8ccd5016 0763172b72c4356c96d3ba5e09c56db2 { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05891.RNA-Seq.transcriptome.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.transcriptome.gdc_realn.bam 8443924819 BAM transcriptome harmonized CPTAC3 1433e3c0-c596-419c-87f4-438969691f34 88ec669cc7959172bd1c5fbc894d23e4 { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05891.RNA-Seq.chimeric.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.chimeric.gdc_realn.bam 125061288 BAM chimeric harmonized CPTAC3 3f692bc8-a618-4339-bd2b-49b9c29accba 0cb7133fa513ae27b96ecc77d6596346 { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05891.RNA-Seq.genomic.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.genomic.gdc_realn.bam 7414092079 BAM genomic harmonized CPTAC3 70ea5557-22d3-4350-803e-a4c170565909 e9a9cc9874dd86fb9d3d5a81fcacee9d { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05891.RNA-Seq.R1_L003.Tbm C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC32-K00270_0278_AHL3YTBBXY_AAGTCCAA-TATGAGTA_S9_L003_R1_001.fastq.gz 3742419259 FASTQ R1_L003 unaligned CPTAC3 5e9c334a-180d-4890-820b-7cd231323293 f67afd01478bd9587214e63b7367f094 { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-05891.RNA-Seq.R2_L003.Tbm C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 210331_UNC32-K00270_0278_AHL3YTBBXY_AAGTCCAA-TATGAGTA_S9_L003_R2_001.fastq.gz 3937724088 FASTQ R2_L003 unaligned CPTAC3 2f95d192-8eb5-40a0-9b25-678d8ccd5016 0763172b72c4356c96d3ba5e09c56db2 { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-05891.RNA-Seq.transcriptome.Tbm.hg38 C3L-05891 AML RNA-Seq tumor_bone_marrow CPT0344470002 fabb7333-009e-480f-9a54-28109eaae71a.rna_seq.transcriptome.gdc_realn.bam 8443924819 BAM transcriptome harmonized CPTAC3 74564fc9-c6ad-4677-900f-d5d6d6430091 88ec669cc7959172bd1c5fbc894d23e4 { 'aliquot_tag': 'ALQ_96f0b6cb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05891.WGS.Nbc C3L-05891 AML WGS buccal_normal CPT0344430002 CPT0344430002.WholeGenome.RP-2158.bam 60418028656 BAM aligned CPTAC3 ebb4cb9b-34b8-4d0a-896f-a1d4eb1aa930 e9d45de02858835ba620bb2f9a67a99f { 'aliquot_tag': 'ALQ_6370100b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05891.WGS.Nbc.hg38 C3L-05891 AML WGS buccal_normal CPT0344430002 0fe33824-b62a-4770-ae45-99ae3ee6d6d8_wgs_gdc_realn.bam 196247280574 BAM harmonized CPTAC3 aa5e5bd5-4de1-4fc8-9900-db318dd44574 a598e08ba21ec46579405d4f90b885b1 { 'aliquot_tag': 'ALQ_6370100b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05891.WGS.Tbm C3L-05891 AML WGS tumor_bone_marrow CPT0344460002 CPT0344460002.WholeGenome.RP-2158.bam 53356809941 BAM aligned CPTAC3 45a58ac1-bbda-482f-8836-661caa2b8483 c9bed33cba691de6f78c4320d04b493a { 'aliquot_tag': 'ALQ_ab909f7b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05891.WGS.Tbm.hg38 C3L-05891 AML WGS tumor_bone_marrow CPT0344460002 e06dcccc-bd53-41b6-815e-5ac4e351fa97_wgs_gdc_realn.bam 152372269151 BAM harmonized CPTAC3 9f9777c6-debb-46c5-a695-f9d04ec1236c 3f212900680f470cd0edcc1267acd1a3 { 'aliquot_tag': 'ALQ_ab909f7b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05891.WXS.Nbc C3L-05891 AML WXS buccal_normal CPT0344430002 CPT0344430002.WholeExome.RP-1303.bam 33463462757 BAM aligned CPTAC3 778c0ea6-b5f9-4578-bad6-c19e1646af58 5764c861b91f1ea3dfa5b5b155b14727 { 'aliquot_tag': 'ALQ_6370100b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05891.WXS.Nbc.hg38 C3L-05891 AML WXS buccal_normal CPT0344430002 0fe33824-b62a-4770-ae45-99ae3ee6d6d8_wxs_gdc_realn.bam 46274197322 BAM harmonized CPTAC3 08dfa21d-c21b-4a87-8285-94d4978a4cbc b30004e66dbb585307108593ec459bb1 { 'aliquot_tag': 'ALQ_6370100b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05891.WXS.Tbm C3L-05891 AML WXS tumor_bone_marrow CPT0344460002 CPT0344460002.WholeExome.RP-1303.bam 26377484748 BAM aligned CPTAC3 be076348-9167-46bf-8712-554ba5b40a62 6e59ddc2724a49b1fc8a5448813177cc { 'aliquot_tag': 'ALQ_ab909f7b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05891.WXS.Tbm.hg38 C3L-05891 AML WXS tumor_bone_marrow CPT0344460002 e06dcccc-bd53-41b6-815e-5ac4e351fa97_wxs_gdc_realn.bam 36023652593 BAM harmonized CPTAC3 e8855cd6-e357-4889-b201-d59dd9e8e6f5 5be131e3997b3e2e54cf8ade152eab39 { 'aliquot_tag': 'ALQ_ab909f7b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05892.MethArray.Green.Tbm C3L-05892 AML Methylation Array tumor_bone_marrow CPT0344570002 205555390174_R07C01_Grn.idat 13677965 IDAT Green NA CPTAC3 32969927-2f15-4e71-a9ec-90167211f6cd 1fb4682fdca6b57714b0ef08d669a20f { 'aliquot_tag': 'ALQ_5dac656e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05892.MethArray.Red.Tbm C3L-05892 AML Methylation Array tumor_bone_marrow CPT0344570002 205555390174_R07C01_Red.idat 13677965 IDAT Red NA CPTAC3 6cdaf597-e8df-4ed1-b462-0a064d6c4c93 3c617871a196b119e6628239fd68709d { 'aliquot_tag': 'ALQ_5dac656e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05892.miRNA-Seq.Tbm C3L-05892 AML miRNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC31-K00269_0297_AHKCFKBBXY_ACAGTG_S14_L007_R1_001.unaln.bam 226351704 BAM unaligned CPTAC3 16dd3a39-574e-4a2f-9e13-07feb2b5ee77 0bb398b665681cb195f4cd1bb12add38 { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05892.miRNA-Seq.Tbm.hg38 C3L-05892 AML miRNA-Seq tumor_bone_marrow CPT0344580002 43a4585c-44e2-4532-8cf6-73dca98d345e_mirnaseq_gdc_realn.bam 240129874 BAM harmonized CPTAC3 05ccb4e4-f3c4-42a1-a613-ab84f4bfd8c9 e79b547cbdcc5d2b6c0dae60a56b5978 { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05892.RNA-Seq.chimeric.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.chimeric.gdc_realn.bam 125580417 BAM chimeric harmonized CPTAC3 8b27289c-eb1f-40ab-a69b-a68b994514a5 74be8a6238e45fac040bb3a0af41e05c { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05892.RNA-Seq.genomic.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.genomic.gdc_realn.bam 8980071101 BAM genomic harmonized CPTAC3 ce4dff82-f24a-4bec-809a-a31ad5237acd 44b48b28c9488a4a696b1cb7910afbf8 { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05892.RNA-Seq.R1_L002.Tbm C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC32-K00270_0278_AHL3YTBBXY_ATCCACTG-AGGTGCGT_S5_L002_R1_001.fastq.gz 3856451427 FASTQ R1_L002 unaligned CPTAC3 28189eba-fc3b-47fa-ac61-71b9c3fe1e29 80232a7f4ad27f82b426643ee5790b0f { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05892.RNA-Seq.R2_L002.Tbm C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC32-K00270_0278_AHL3YTBBXY_ATCCACTG-AGGTGCGT_S5_L002_R2_001.fastq.gz 4224582460 FASTQ R2_L002 unaligned CPTAC3 624dee72-97d3-4fe3-9653-94dd0f19793d 5a8480f2fa5ca69f1e557f6a00320275 { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05892.RNA-Seq.transcriptome.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.transcriptome.gdc_realn.bam 7471134778 BAM transcriptome harmonized CPTAC3 b213ccf6-1daf-4b61-ac4d-cf0b336669e2 8e3bb5986e6653da5b6e6d26571ed662 { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05892.RNA-Seq.chimeric.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.chimeric.gdc_realn.bam 125580417 BAM chimeric harmonized CPTAC3 848c1061-a89e-409f-8014-fa9b95bca8f3 74be8a6238e45fac040bb3a0af41e05c { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05892.RNA-Seq.genomic.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.genomic.gdc_realn.bam 8980071101 BAM genomic harmonized CPTAC3 b168c5b2-9699-49ae-b592-298d708521e2 44b48b28c9488a4a696b1cb7910afbf8 { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05892.RNA-Seq.R1_L002.Tbm C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC32-K00270_0278_AHL3YTBBXY_ATCCACTG-AGGTGCGT_S5_L002_R1_001.fastq.gz 3856451427 FASTQ R1_L002 unaligned CPTAC3 28189eba-fc3b-47fa-ac61-71b9c3fe1e29 80232a7f4ad27f82b426643ee5790b0f { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-05892.RNA-Seq.R2_L002.Tbm C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 210331_UNC32-K00270_0278_AHL3YTBBXY_ATCCACTG-AGGTGCGT_S5_L002_R2_001.fastq.gz 4224582460 FASTQ R2_L002 unaligned CPTAC3 624dee72-97d3-4fe3-9653-94dd0f19793d 5a8480f2fa5ca69f1e557f6a00320275 { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-05892.RNA-Seq.transcriptome.Tbm.hg38 C3L-05892 AML RNA-Seq tumor_bone_marrow CPT0344580002 94b60ed8-a6a8-46d0-953b-41962733ac85.rna_seq.transcriptome.gdc_realn.bam 7471134778 BAM transcriptome harmonized CPTAC3 82e63f79-d94c-4ab7-bdb8-7e46436085a8 8e3bb5986e6653da5b6e6d26571ed662 { 'aliquot_tag': 'ALQ_dffcf2bf', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05892.WGS.Tbm C3L-05892 AML WGS tumor_bone_marrow CPT0344570002 CPT0344570002.WholeGenome.RP-2158.bam 61917713256 BAM aligned CPTAC3 7d352dbc-8a90-45df-855b-a4e98e47cac4 fc49c467876c302fd5843364681ac155 { 'aliquot_tag': 'ALQ_5dac656e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05892.WGS.Tbm.hg38 C3L-05892 AML WGS tumor_bone_marrow CPT0344570002 6b2ae50d-20ab-4dc2-ab5a-1b5370589454_wgs_gdc_realn.bam 174566382789 BAM harmonized CPTAC3 b5088c7b-0d10-4cce-a961-2b8009241317 c2c13449a2d2d3b6b8811163376c8794 { 'aliquot_tag': 'ALQ_5dac656e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05892.WXS.Nbc C3L-05892 AML WXS buccal_normal CPT0344540003 CPT0344540003.WholeExome.RP-1303.bam 29866798117 BAM aligned CPTAC3 9bcd0064-135e-4589-a675-05fb2b24563d 48fb0bbdcb2a7886e80b99251663ce12 { 'aliquot_tag': 'ALQ_6d0b2f28', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05892.WXS.Nbc.hg38 C3L-05892 AML WXS buccal_normal CPT0344540003 3bc743d0-e149-46ec-a307-fc027b6b2a97_wxs_gdc_realn.bam 40930894212 BAM harmonized CPTAC3 1d5719fd-0d06-4185-9d13-ed1195d72fc4 fb9aae49cc347e7709e22edd7c9f05dc { 'aliquot_tag': 'ALQ_6d0b2f28', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05892.WXS.Tbm C3L-05892 AML WXS tumor_bone_marrow CPT0344570002 CPT0344570002.WholeExome.RP-1303.bam 23528728112 BAM aligned CPTAC3 1f21eff4-75e0-4fd3-a9af-a5433910fe29 8dd1d6b77e0e905cc3506505cbd347bf { 'aliquot_tag': 'ALQ_5dac656e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05892.WXS.Tbm.hg38 C3L-05892 AML WXS tumor_bone_marrow CPT0344570002 6b2ae50d-20ab-4dc2-ab5a-1b5370589454_wxs_gdc_realn.bam 32184558939 BAM harmonized CPTAC3 00b3b841-4dae-4d1d-b106-f15c7d50fcc9 4fe75db2a087b330c1acce7f0ef5a06c { 'aliquot_tag': 'ALQ_5dac656e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05894.MethArray.Green.Tbm C3L-05894 AML Methylation Array tumor_bone_marrow CPT0300520002 205555380155_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 3e5ff1cb-9336-4411-b4c0-e03022ff0b4d b1d0ae2e519cad66a36ed5463ee6146f { 'aliquot_tag': 'ALQ_e549c0f7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05894.MethArray.Red.Tbm C3L-05894 AML Methylation Array tumor_bone_marrow CPT0300520002 205555380155_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 004acc8d-2415-4b9e-a59e-9b38cca35e63 1aa684ab246b272164b207b78b9c54f3 { 'aliquot_tag': 'ALQ_e549c0f7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05894.miRNA-Seq.Tbm C3L-05894 AML miRNA-Seq tumor_bone_marrow CPT0300530002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTGGCC_S17_L001_R1_001.unaln.bam 245668617 BAM unaligned CPTAC3 5d975d09-44dc-4085-8238-4efb7f9ad65e 379ed9eb1ac4e66b4be1236aa6d2e5d9 { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05894.RNA-Seq.chimeric.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.chimeric.gdc_realn.bam 92301159 BAM chimeric harmonized CPTAC3 fce1b25a-d23b-4980-b6cb-12e5c4115472 2bbf5dd811327a85b3bee88652c0c8c5 { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05894.RNA-Seq.genomic.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.genomic.gdc_realn.bam 7169723181 BAM genomic harmonized CPTAC3 27bdb61d-b684-41c9-99a1-04919370effe 0a3dfbcc11926d7b62228e3d29484598 { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05894.RNA-Seq.R1_L004.Tbm C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 210319_UNC31-K00269_0296_AHKT37BBXY_CCTTCACC-GACGCTCC_S14_L004_R1_001.fastq.gz 3647790340 FASTQ R1_L004 unaligned CPTAC3 856e135f-034f-44f6-821f-65ac85cf7475 daa263d589e1e40ad6daed016cd1543d { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05894.RNA-Seq.R2_L004.Tbm C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 210319_UNC31-K00269_0296_AHKT37BBXY_CCTTCACC-GACGCTCC_S14_L004_R2_001.fastq.gz 3869227268 FASTQ R2_L004 unaligned CPTAC3 50c8b190-4ce0-4bb4-8dc0-b1daf098b6af b2016888ba60b6ecd46130b2619a19f1 { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05894.RNA-Seq.transcriptome.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.transcriptome.gdc_realn.bam 8823923071 BAM transcriptome harmonized CPTAC3 54edc988-0303-4dad-a5c3-22b1ebe40d85 1c2e0a4314eb4128a328ff99ea143014 { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05894.miRNA-Seq.Tbm.hg38 C3L-05894 AML miRNA-Seq tumor_bone_marrow CPT0300530002 e4b6780a-9e5d-462a-9787-226f9680e39e_mirnaseq_gdc_realn.bam 266676667 BAM harmonized CPTAC3 c4cbcf70-945e-49f9-8322-e678ecc3e6be fe9875305d2be133869cf5baa685273a { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05894.RNA-Seq.chimeric.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.chimeric.gdc_realn.bam 92301159 BAM chimeric harmonized CPTAC3 4d281739-b3d7-4dd1-934e-28527f55fb87 2bbf5dd811327a85b3bee88652c0c8c5 { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05894.RNA-Seq.genomic.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.genomic.gdc_realn.bam 7169723181 BAM genomic harmonized CPTAC3 27b0299f-d71f-47d7-aaa6-0725b9694482 0a3dfbcc11926d7b62228e3d29484598 { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05894.RNA-Seq.R1_L004.Tbm C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 210319_UNC31-K00269_0296_AHKT37BBXY_CCTTCACC-GACGCTCC_S14_L004_R1_001.fastq.gz 3647790340 FASTQ R1_L004 unaligned CPTAC3 856e135f-034f-44f6-821f-65ac85cf7475 daa263d589e1e40ad6daed016cd1543d { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-05894.RNA-Seq.R2_L004.Tbm C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 210319_UNC31-K00269_0296_AHKT37BBXY_CCTTCACC-GACGCTCC_S14_L004_R2_001.fastq.gz 3869227268 FASTQ R2_L004 unaligned CPTAC3 50c8b190-4ce0-4bb4-8dc0-b1daf098b6af b2016888ba60b6ecd46130b2619a19f1 { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-05894.RNA-Seq.transcriptome.Tbm.hg38 C3L-05894 AML RNA-Seq tumor_bone_marrow CPT0300530002 6a21af56-231e-4533-992c-cb533aa6e093.rna_seq.transcriptome.gdc_realn.bam 8823923071 BAM transcriptome harmonized CPTAC3 08159852-3449-4694-bb11-82118fe3dc46 1c2e0a4314eb4128a328ff99ea143014 { 'aliquot_tag': 'ALQ_d829e947', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05894.WGS.Tbm C3L-05894 AML WGS tumor_bone_marrow CPT0300520002 CPT0300520002.WholeGenome.RP-2158.bam 51681398515 BAM aligned CPTAC3 3213b80f-331d-42ee-9895-4803c47d1ec4 7ced222c57d562e13c80c8d5b0c0995c { 'aliquot_tag': 'ALQ_e549c0f7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05894.WGS.Tbm.hg38 C3L-05894 AML WGS tumor_bone_marrow CPT0300520002 8f262260-85fc-4a2f-a801-8ed54dfe0bd8_wgs_gdc_realn.bam 154276499193 BAM harmonized CPTAC3 8ce18ce7-5ab3-4e55-b031-1e200bad9e76 b3b6f42f597c80dceb1bf30d0d9b51ca { 'aliquot_tag': 'ALQ_e549c0f7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05894.WXS.Nbc C3L-05894 AML WXS buccal_normal CPT0300490002 CPT0300490002.WholeExome.RP-1303.bam 22090165704 BAM aligned CPTAC3 5a164828-b5e9-4e2b-a09b-cf227f251209 69a795f31d89d8c8051e34a6d080d95b { 'aliquot_tag': 'ALQ_59c52243', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05894.WXS.Nbc.hg38 C3L-05894 AML WXS buccal_normal CPT0300490002 3b5bd451-95b6-42e1-b037-2254c5302c95_wxs_gdc_realn.bam 30200452871 BAM harmonized CPTAC3 e1a46f9f-2e3b-482c-a95e-6c04ff1de4b7 23637e659175ef0e2668cc0814d50aab { 'aliquot_tag': 'ALQ_59c52243', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05894.WXS.Tbm C3L-05894 AML WXS tumor_bone_marrow CPT0300520002 CPT0300520002.WholeExome.RP-1303.bam 24724503632 BAM aligned CPTAC3 3166b044-99ef-4ffb-9668-1e6c4eb5930d 2d69f098ed083d3338cf3bc18629b573 { 'aliquot_tag': 'ALQ_e549c0f7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05894.WXS.Tbm.hg38 C3L-05894 AML WXS tumor_bone_marrow CPT0300520002 8f262260-85fc-4a2f-a801-8ed54dfe0bd8_wxs_gdc_realn.bam 33553658365 BAM harmonized CPTAC3 c615455d-4137-4d2d-a581-25ec5cc8b0d7 7f8bde1a55978a8eac48d40111a60886 { 'aliquot_tag': 'ALQ_e549c0f7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05896.MethArray.Green.Tbm C3L-05896 AML Methylation Array tumor_bone_marrow CPT0344840002 205987780161_R07C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6cb11088-5809-4f10-b0db-76d7545b78e3 e90640d50655ac3fcd55439ecfe51f60 { 'aliquot_tag': 'ALQ_a6920c60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05896.MethArray.Red.Tbm C3L-05896 AML Methylation Array tumor_bone_marrow CPT0344840002 205987780161_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 9544f37c-f46e-4537-85eb-96410184f6d8 541b2933621fe0e3d46f1d1d99105d00 { 'aliquot_tag': 'ALQ_a6920c60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05896.miRNA-Seq.Tpb C3L-05896 AML miRNA-Seq tumor_peripheral_blood CPT0344870002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTAGCT_S11_L001_R1_001.unaln.bam 262339419 BAM unaligned CPTAC3 8ce9e68b-b412-4911-b102-4dd0d4c1d98f 3d89acf999708067b88947e35a13bb0b { 'aliquot_tag': 'ALQ_e13276b0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05896.RNA-Seq.R1_L004.Tpb C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 211207_UNC32-K00270_0305_AHMW37BBXY_TGGATCGA-GTGCGATA_S16_L004_R1_001.fastq.gz 4244493510 FASTQ R1_L004 unaligned CPTAC3 311f9869-14ad-4d89-a131-5d510c836065 aeecbf2d5db55a6f519795ea05d7296d { 'aliquot_tag': 'ALQ_e13276b0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05896.RNA-Seq.R2_L004.Tpb C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 211207_UNC32-K00270_0305_AHMW37BBXY_TGGATCGA-GTGCGATA_S16_L004_R2_001.fastq.gz 4581900123 FASTQ R2_L004 unaligned CPTAC3 7f023f41-7b84-4b3d-bb5e-85fae3e0d179 f796ed68990b318a66f7d88b101f8403 { 'aliquot_tag': 'ALQ_e13276b0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05896.miRNA-Seq.Tpb.hg38 C3L-05896 AML miRNA-Seq tumor_peripheral_blood CPT0344870002 00cd7b06-6c39-4da0-b497-5d16762c9594_mirnaseq_gdc_realn.bam 284801918 BAM harmonized CPTAC3 5a6fd180-ec96-4df2-9b70-236b7fd14926 825038f671a24199ba516ca1ea2f4578 { 'aliquot_tag': 'ALQ_e13276b0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05896.RNA-Seq.chimeric.Tpb.hg38 C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 0f53df3e-1302-4411-9b45-e5ba68016320.rna_seq.chimeric.gdc_realn.bam 507929428 BAM chimeric harmonized CPTAC3 e056a8f6-aa98-40b8-ae92-e3cb2d15f647 90d5a57806435472b36fd842aeae1f23 { 'aliquot_tag': 'ALQ_e13276b0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05896.RNA-Seq.genomic.Tpb.hg38 C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 0f53df3e-1302-4411-9b45-e5ba68016320.rna_seq.genomic.gdc_realn.bam 8645804622 BAM genomic harmonized CPTAC3 447ec45c-a31e-41ef-83f2-8a755213f942 ccc22730d19704f7dda845007df3e379 { 'aliquot_tag': 'ALQ_e13276b0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05896.RNA-Seq.R1_L004.Tpb C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 211207_UNC32-K00270_0305_AHMW37BBXY_TGGATCGA-GTGCGATA_S16_L004_R1_001.fastq.gz 4244493510 FASTQ R1_L004 unaligned CPTAC3 311f9869-14ad-4d89-a131-5d510c836065 aeecbf2d5db55a6f519795ea05d7296d { 'aliquot_tag': 'ALQ_e13276b0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L004' } +C3L-05896.RNA-Seq.R2_L004.Tpb C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 211207_UNC32-K00270_0305_AHMW37BBXY_TGGATCGA-GTGCGATA_S16_L004_R2_001.fastq.gz 4581900123 FASTQ R2_L004 unaligned CPTAC3 7f023f41-7b84-4b3d-bb5e-85fae3e0d179 f796ed68990b318a66f7d88b101f8403 { 'aliquot_tag': 'ALQ_e13276b0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L004' } +C3L-05896.RNA-Seq.transcriptome.Tpb.hg38 C3L-05896 AML RNA-Seq tumor_peripheral_blood CPT0344870002 0f53df3e-1302-4411-9b45-e5ba68016320.rna_seq.transcriptome.gdc_realn.bam 9045706078 BAM transcriptome harmonized CPTAC3 21c70f0b-f80c-436f-a5e9-74f524ea34b7 b3e9e51be2b07098f90b4cae57244307 { 'aliquot_tag': 'ALQ_e13276b0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05896.WGS.Nbc C3L-05896 AML WGS buccal_normal CPT0344810003 CPT0344810003.WholeGenome.RP-2158.bam 49555549432 BAM aligned CPTAC3 124d0975-02aa-42cb-9d40-812e14646807 778a44eb752209393467b3cd5ef2b89d { 'aliquot_tag': 'ALQ_1975b386', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05896.WGS.Nbc.hg38 C3L-05896 AML WGS buccal_normal CPT0344810003 a8787364-b796-4765-9d33-4704430f6803_wgs_gdc_realn.bam 149874320363 BAM harmonized CPTAC3 80234ef6-f17c-4840-ae61-720e520c53ee 427a31e782bc50473eaa4d5e6838a890 { 'aliquot_tag': 'ALQ_1975b386', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05896.WGS.Tbm C3L-05896 AML WGS tumor_bone_marrow CPT0344840002 CPT0344840002.WholeGenome.RP-2158.bam 48320264108 BAM aligned CPTAC3 be97c4aa-12ef-47d5-91bc-5530c9f799b9 de3513d47c47b01a1bdb36f20e2fcaed { 'aliquot_tag': 'ALQ_a6920c60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05896.WGS.Tbm.hg38 C3L-05896 AML WGS tumor_bone_marrow CPT0344840002 289d953c-baea-4aae-9b01-3cff1fd8464f_wgs_gdc_realn.bam 143146606316 BAM harmonized CPTAC3 0d9b3169-cf4e-4fba-a97b-787b4cb5a7f7 0a7be7b15c380fa31e79c208aa275cde { 'aliquot_tag': 'ALQ_a6920c60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05896.WXS.Nbc C3L-05896 AML WXS buccal_normal CPT0344810003 CPT0344810003.WholeExome.RP-1303.bam 26366554171 BAM aligned CPTAC3 5de65a0a-ae3a-4d11-9df2-489b96d2d5fc fe2abaf27fe7e0c15a8da54f562fcd2e { 'aliquot_tag': 'ALQ_1975b386', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05896.WXS.Nbc.hg38 C3L-05896 AML WXS buccal_normal CPT0344810003 a8787364-b796-4765-9d33-4704430f6803_wxs_gdc_realn.bam 35527659437 BAM harmonized CPTAC3 5cb56b61-4615-4065-aedb-ac4019618f66 8257a4ee8abc941dc907d5301b8d598a { 'aliquot_tag': 'ALQ_1975b386', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05896.WXS.Tbm C3L-05896 AML WXS tumor_bone_marrow CPT0344840002 CPT0344840002.WholeExome.RP-1303.bam 27978569074 BAM aligned CPTAC3 3cc289dd-24ab-4686-94e3-4b0c1413203b b13b9a8474e9b476758b38ee943e9662 { 'aliquot_tag': 'ALQ_a6920c60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05896.WXS.Tbm.hg38 C3L-05896 AML WXS tumor_bone_marrow CPT0344840002 289d953c-baea-4aae-9b01-3cff1fd8464f_wxs_gdc_realn.bam 38735747297 BAM harmonized CPTAC3 36fc5398-69bf-40ee-8769-44aed38629be c22f4b6778fc3b5c08914204cc3bd4fd { 'aliquot_tag': 'ALQ_a6920c60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05898.MethArray.Green.Tbm C3L-05898 AML Methylation Array tumor_bone_marrow CPT0344950002 205987770157_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 06b9b51d-e25a-46ba-a475-dd76cb973656 533128d774f8352af3556d7b20a8782d { 'aliquot_tag': 'ALQ_50aef675', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05898.MethArray.Red.Tbm C3L-05898 AML Methylation Array tumor_bone_marrow CPT0344950002 205987770157_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 3a98a9e6-1a06-42b2-bd5b-841c58216761 c4d0e551bd8c800b4cd2b8e1faa5d46c { 'aliquot_tag': 'ALQ_50aef675', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05898.miRNA-Seq.Tpb C3L-05898 AML miRNA-Seq tumor_peripheral_blood CPT0344980002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTATAC_S12_L001_R1_001.unaln.bam 322158345 BAM unaligned CPTAC3 228b084a-4d22-483e-a6a3-cb928ced5c93 da093b09f3e24b022b8e0aeea0630e5c { 'aliquot_tag': 'ALQ_a83e32c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05898.RNA-Seq.R1_L005.Tpb C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 211207_UNC32-K00270_0305_AHMW37BBXY_AGTTCAGG-CCAACAGA_S17_L005_R1_001.fastq.gz 3654511623 FASTQ R1_L005 unaligned CPTAC3 13dade3a-17ec-4dcc-b306-27c6c282aebd aaacaa90f29b193263e95ab1704fa725 { 'aliquot_tag': 'ALQ_a83e32c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05898.RNA-Seq.R2_L005.Tpb C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 211207_UNC32-K00270_0305_AHMW37BBXY_AGTTCAGG-CCAACAGA_S17_L005_R2_001.fastq.gz 3974470097 FASTQ R2_L005 unaligned CPTAC3 6717aa61-9187-4996-ae44-d79dd6e1b16d bfbc70c705f889dfa7c0823d46c200d4 { 'aliquot_tag': 'ALQ_a83e32c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05898.miRNA-Seq.Tpb.hg38 C3L-05898 AML miRNA-Seq tumor_peripheral_blood CPT0344980002 ee6a82bf-2a3a-4a6e-820f-e1252ee0ce89_mirnaseq_gdc_realn.bam 348546487 BAM harmonized CPTAC3 e2fcb0d6-5daf-4f23-9d8a-1d9bd876ee51 061bd63360187644a7ebf3c750bc6afe { 'aliquot_tag': 'ALQ_a83e32c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05898.RNA-Seq.chimeric.Tpb.hg38 C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 1fe38438-ac09-4a93-ba3c-3bda70536771.rna_seq.chimeric.gdc_realn.bam 472595446 BAM chimeric harmonized CPTAC3 9658f58d-950a-4973-8cd9-c5afa8f22e95 b9dc24040f6f6d6a33a21ff84597645b { 'aliquot_tag': 'ALQ_a83e32c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05898.RNA-Seq.genomic.Tpb.hg38 C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 1fe38438-ac09-4a93-ba3c-3bda70536771.rna_seq.genomic.gdc_realn.bam 8286664583 BAM genomic harmonized CPTAC3 7f442cd7-85fc-41de-8598-455bdae60199 d363d85615301e3cc9375c2916304546 { 'aliquot_tag': 'ALQ_a83e32c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05898.RNA-Seq.R1_L005.Tpb C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 211207_UNC32-K00270_0305_AHMW37BBXY_AGTTCAGG-CCAACAGA_S17_L005_R1_001.fastq.gz 3654511623 FASTQ R1_L005 unaligned CPTAC3 13dade3a-17ec-4dcc-b306-27c6c282aebd aaacaa90f29b193263e95ab1704fa725 { 'aliquot_tag': 'ALQ_a83e32c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L005' } +C3L-05898.RNA-Seq.R2_L005.Tpb C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 211207_UNC32-K00270_0305_AHMW37BBXY_AGTTCAGG-CCAACAGA_S17_L005_R2_001.fastq.gz 3974470097 FASTQ R2_L005 unaligned CPTAC3 6717aa61-9187-4996-ae44-d79dd6e1b16d bfbc70c705f889dfa7c0823d46c200d4 { 'aliquot_tag': 'ALQ_a83e32c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L005' } +C3L-05898.RNA-Seq.transcriptome.Tpb.hg38 C3L-05898 AML RNA-Seq tumor_peripheral_blood CPT0344980002 1fe38438-ac09-4a93-ba3c-3bda70536771.rna_seq.transcriptome.gdc_realn.bam 6925380648 BAM transcriptome harmonized CPTAC3 8b627ce6-87b0-4b0a-93b5-9356f5589f37 4f006c44d6e2b4ec5c00b933f2a9e8e4 { 'aliquot_tag': 'ALQ_a83e32c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05898.WGS.Tbm C3L-05898 AML WGS tumor_bone_marrow CPT0344950002 CPT0344950002.WholeGenome.RP-2158.bam 43658142411 BAM aligned CPTAC3 b0bb007f-a7e2-41f8-948d-60adaec827b5 bcb6520c7a3bc470a527579c74fa553e { 'aliquot_tag': 'ALQ_50aef675', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05898.WGS.Tbm.hg38 C3L-05898 AML WGS tumor_bone_marrow CPT0344950002 7a2b9e09-2bca-4aea-ba5c-9dbf0b30bf40_wgs_gdc_realn.bam 133152812373 BAM harmonized CPTAC3 6f49e9fe-df23-4e18-9a92-d2a21bc2344c 627c38a1ca11998c2cc634a55b10b60f { 'aliquot_tag': 'ALQ_50aef675', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05898.WXS.Nbc C3L-05898 AML WXS buccal_normal CPT0344920005 CPT0344920005.WholeExome.RP-1303.bam 24338718505 BAM aligned CPTAC3 7968b926-37e4-4c89-8477-11a967ed8c25 2b9f0949e7c2cfe4f916a53a23d3e9dc { 'aliquot_tag': 'ALQ_7ceabfc6', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05898.WXS.Nbc.hg38 C3L-05898 AML WXS buccal_normal CPT0344920005 ac06d127-7ee9-460f-88e8-dad1bc7b8f8a_wxs_gdc_realn.bam 32893244271 BAM harmonized CPTAC3 c207cee2-93ef-463d-aec6-ceaf6b131c3f ae4f0f3b6c8ea9cefd22cd0b19e27cff { 'aliquot_tag': 'ALQ_7ceabfc6', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05898.WXS.Tbm C3L-05898 AML WXS tumor_bone_marrow CPT0344950002 CPT0344950002.WholeExome.RP-1303.bam 28549605478 BAM aligned CPTAC3 bf4a5777-1b1b-4c80-a38a-0cc71f87118a 2379f13c9417464c5418d0a6bee80469 { 'aliquot_tag': 'ALQ_50aef675', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05898.WXS.Tbm.hg38 C3L-05898 AML WXS tumor_bone_marrow CPT0344950002 7a2b9e09-2bca-4aea-ba5c-9dbf0b30bf40_wxs_gdc_realn.bam 39906623067 BAM harmonized CPTAC3 4528565c-d11e-46b6-815c-17e44f7f1859 d49638f36c89f152cdd748f258af6901 { 'aliquot_tag': 'ALQ_50aef675', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05905.MethArray.Green.Tpb C3L-05905 AML Methylation Array tumor_peripheral_blood CPT0345310002 205705520145_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 af67b6b5-d0ba-43d3-bb1f-35aca3db6a1e 313b9c17837e2e5972395d923e92c5a6 { 'aliquot_tag': 'ALQ_a2c27867', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05905.MethArray.Red.Tpb C3L-05905 AML Methylation Array tumor_peripheral_blood CPT0345310002 205705520145_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 4e139239-d771-4a7c-aa39-1f43356bc047 4b3743e4b7033131c63f3017a9afcb9d { 'aliquot_tag': 'ALQ_a2c27867', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05905.miRNA-Seq.Tpb C3L-05905 AML miRNA-Seq tumor_peripheral_blood CPT0345320002 220125_UNC32-K00270_0311_AHMNYYBBXY_GATCAG_S34_L002_R1_001.unaln.bam 197197875 BAM unaligned CPTAC3 3c83b257-534b-47df-8941-835a86e7bef0 80a0a8c4cdcab26bb1d5d00c3674e128 { 'aliquot_tag': 'ALQ_e56202b7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05905.RNA-Seq.R1_L001.Tpb C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTTGGTAT-CCAAGTCC_S2_L001_R1_001.fastq.gz 3429429812 FASTQ R1_L001 unaligned CPTAC3 7fe72174-8147-453f-b08b-0502d721e5f0 e5a38e81ae481eb21115affaac76c8e2 { 'aliquot_tag': 'ALQ_e56202b7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-05905.RNA-Seq.R2_L001.Tpb C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTTGGTAT-CCAAGTCC_S2_L001_R2_001.fastq.gz 3739804390 FASTQ R2_L001 unaligned CPTAC3 78fb450b-4932-417a-8a7b-c7a93b7ac885 51994a8b48450d76eeacb2e73a2b5d55 { 'aliquot_tag': 'ALQ_e56202b7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05905.miRNA-Seq.Tpb.hg38 C3L-05905 AML miRNA-Seq tumor_peripheral_blood CPT0345320002 71a10c9b-72b6-430e-b1d1-1d13a93e2415_mirnaseq_gdc_realn.bam 219029289 BAM harmonized CPTAC3 a409066d-3a11-40a5-9e15-51edc2d147f1 c5bf1b58026e107f84c08265ad5a7574 { 'aliquot_tag': 'ALQ_e56202b7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05905.RNA-Seq.chimeric.Tpb.hg38 C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 2729973a-5caa-4df1-8e5e-d6f871a14764.rna_seq.chimeric.gdc_realn.bam 459901022 BAM chimeric harmonized CPTAC3 49994065-d09a-459e-85fd-97d6480ea82d 6eb4c8db561f4e76b754463ffea32058 { 'aliquot_tag': 'ALQ_e56202b7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05905.RNA-Seq.genomic.Tpb.hg38 C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 2729973a-5caa-4df1-8e5e-d6f871a14764.rna_seq.genomic.gdc_realn.bam 6780800175 BAM genomic harmonized CPTAC3 38198b6b-ea5a-4e77-a33d-c73cdf816e72 7b84f45a2a29509eed3072cae38db063 { 'aliquot_tag': 'ALQ_e56202b7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05905.RNA-Seq.R1_L001.Tpb C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTTGGTAT-CCAAGTCC_S2_L001_R1_001.fastq.gz 3429429812 FASTQ R1_L001 unaligned CPTAC3 7fe72174-8147-453f-b08b-0502d721e5f0 e5a38e81ae481eb21115affaac76c8e2 { 'aliquot_tag': 'ALQ_e56202b7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L001' } +C3L-05905.RNA-Seq.R2_L001.Tpb C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTTGGTAT-CCAAGTCC_S2_L001_R2_001.fastq.gz 3739804390 FASTQ R2_L001 unaligned CPTAC3 78fb450b-4932-417a-8a7b-c7a93b7ac885 51994a8b48450d76eeacb2e73a2b5d55 { 'aliquot_tag': 'ALQ_e56202b7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L001' } +C3L-05905.RNA-Seq.transcriptome.Tpb.hg38 C3L-05905 AML RNA-Seq tumor_peripheral_blood CPT0345320002 2729973a-5caa-4df1-8e5e-d6f871a14764.rna_seq.transcriptome.gdc_realn.bam 7512993551 BAM transcriptome harmonized CPTAC3 661d098f-fb7e-4eb8-ba42-5e24b85ab7f9 d9ce0674bb43a5db48bf51bade46eb6d { 'aliquot_tag': 'ALQ_e56202b7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05905.WGS.Nbc C3L-05905 AML WGS buccal_normal CPT0345240003 CPT0345240003.WholeGenome.RP-2158.bam 47615602604 BAM aligned CPTAC3 f02a12c0-3928-419d-841f-59f5f52740a4 e4e79599c2073d49084c8cf4b8394f94 { 'aliquot_tag': 'ALQ_d6791424', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05905.WGS.Nbc.hg38 C3L-05905 AML WGS buccal_normal CPT0345240003 06063016-e53a-44ae-bdcc-6a49f310d450_wgs_gdc_realn.bam 144563530355 BAM harmonized CPTAC3 f3356d52-443e-430b-b183-c2255a34aee4 4ac044281c0461e2ca106b2896a0108d { 'aliquot_tag': 'ALQ_d6791424', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05905.WGS.Tpb C3L-05905 AML WGS tumor_peripheral_blood CPT0345310002 CPT0345310002.WholeGenome.RP-2158.bam 49010225233 BAM aligned CPTAC3 9754153b-c5c7-49cb-afe8-fcc30a0a3106 052597964473f89fdc3cfbcffb7b00f1 { 'aliquot_tag': 'ALQ_a2c27867', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05905.WGS.Tpb.hg38 C3L-05905 AML WGS tumor_peripheral_blood CPT0345310002 3060d11f-1bfa-495f-a4f7-edd587ef1ceb_wgs_gdc_realn.bam 148184199354 BAM harmonized CPTAC3 10d9505e-54f3-4fda-8d41-9397231019b3 1bf812fd27a5f01fd10fe1b6d700e871 { 'aliquot_tag': 'ALQ_a2c27867', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05905.WXS.Nbc C3L-05905 AML WXS buccal_normal CPT0345240003 CPT0345240003.WholeExome.RP-1303.bam 23121993587 BAM aligned CPTAC3 0e5bcdb8-e735-4d8a-a184-f9927e8f864c 43d9ad8a83b71eca9a3035afefd2c129 { 'aliquot_tag': 'ALQ_d6791424', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05905.WXS.Nbc.hg38 C3L-05905 AML WXS buccal_normal CPT0345240003 06063016-e53a-44ae-bdcc-6a49f310d450_wxs_gdc_realn.bam 31688360670 BAM harmonized CPTAC3 f32fb5f4-b57f-4fff-93bd-2ddcc99f3480 33f99fa68a08103abd1cfde825217b91 { 'aliquot_tag': 'ALQ_d6791424', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05905.WXS.Tpb C3L-05905 AML WXS tumor_peripheral_blood CPT0345310002 CPT0345310002.WholeExome.RP-1303.bam 23628176341 BAM aligned CPTAC3 357502d9-a2fa-4548-b031-518280265a44 c3bdaa5751a2483e8d6f674dc3296a23 { 'aliquot_tag': 'ALQ_a2c27867', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-05905.WXS.Tpb.hg38 C3L-05905 AML WXS tumor_peripheral_blood CPT0345310002 3060d11f-1bfa-495f-a4f7-edd587ef1ceb_wxs_gdc_realn.bam 32772271390 BAM harmonized CPTAC3 72d9a24e-0d39-4ee4-8352-596c34431cbb a10deb1ac8dbfb160bc30820d7ac32f2 { 'aliquot_tag': 'ALQ_a2c27867', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-05907.MethArray.Green.Tbm C3L-05907 AML Methylation Array tumor_bone_marrow CPT0303920002 205555380136_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d1798da2-3452-4284-9139-8d80bcb7223f ec7994b93c443093346aeb1378cf2f35 { 'aliquot_tag': 'ALQ_a3631a11', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05907.MethArray.Red.Tbm C3L-05907 AML Methylation Array tumor_bone_marrow CPT0303920002 205555380136_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 71a188ff-507a-4d85-9080-6a7b60cc9475 97e8270ab3d96bfc28e4bfa9b3b88f9d { 'aliquot_tag': 'ALQ_a3631a11', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05907.miRNA-Seq.Tbm C3L-05907 AML miRNA-Seq tumor_bone_marrow CPT0303930002 210702_UNC32-K00270_0289_AHKJ22BBXY_CTTGTA_S10_L001_R1_001.unaln.bam 261293082 BAM unaligned CPTAC3 629e0635-9d6c-4060-acd5-90f9bf0d7c05 200dbe018d81d3d40771282926ac44d5 { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05907.RNA-Seq.chimeric.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.chimeric.gdc_realn.bam 206361159 BAM chimeric harmonized CPTAC3 6eceaf47-7d0d-46c3-a93b-feebad0fc580 51cb6b755c51226125d9366bb5e724d0 { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05907.RNA-Seq.genomic.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.genomic.gdc_realn.bam 7138980630 BAM genomic harmonized CPTAC3 0f431f40-6233-4484-8956-d6d2c5d06ea4 78d27d04828f24492ad592b390875739 { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05907.RNA-Seq.R1_L006.Tbm C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 210319_UNC31-K00269_0296_AHKT37BBXY_AGCTCGCT-GCAGAATC_S21_L006_R1_001.fastq.gz 3641688186 FASTQ R1_L006 unaligned CPTAC3 e1b09891-6cfe-4899-b6c7-0c6286252c8f f0f5533dbe7d5b141c69ff2a870b7804 { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05907.RNA-Seq.R2_L006.Tbm C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 210319_UNC31-K00269_0296_AHKT37BBXY_AGCTCGCT-GCAGAATC_S21_L006_R2_001.fastq.gz 3798003850 FASTQ R2_L006 unaligned CPTAC3 6fe7fe10-f336-4191-bc15-6b18a17733e6 5933d46aab4a6a4293ca364f7cbd9e7e { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05907.RNA-Seq.transcriptome.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.transcriptome.gdc_realn.bam 9734597258 BAM transcriptome harmonized CPTAC3 1018b2e1-b3ca-4420-a033-b70e199e46d2 f98ee44913388f8e340c85d0e283681c { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05907.miRNA-Seq.Tbm.hg38 C3L-05907 AML miRNA-Seq tumor_bone_marrow CPT0303930002 0c56e912-196a-4028-ae9d-9fd319ab9064_mirnaseq_gdc_realn.bam 280101684 BAM harmonized CPTAC3 a0ccc929-d8ce-4fff-9633-aed771ad22eb 691f548e56297403425bbe407c61a354 { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05907.RNA-Seq.chimeric.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.chimeric.gdc_realn.bam 206361159 BAM chimeric harmonized CPTAC3 86886cd7-bad1-4e6e-bcc3-d32c2091d8b3 51cb6b755c51226125d9366bb5e724d0 { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05907.RNA-Seq.genomic.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.genomic.gdc_realn.bam 7138980630 BAM genomic harmonized CPTAC3 056e8013-b590-4e72-9fd8-acb3e3165ae3 78d27d04828f24492ad592b390875739 { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05907.RNA-Seq.R1_L006.Tbm C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 210319_UNC31-K00269_0296_AHKT37BBXY_AGCTCGCT-GCAGAATC_S21_L006_R1_001.fastq.gz 3641688186 FASTQ R1_L006 unaligned CPTAC3 e1b09891-6cfe-4899-b6c7-0c6286252c8f f0f5533dbe7d5b141c69ff2a870b7804 { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-05907.RNA-Seq.R2_L006.Tbm C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 210319_UNC31-K00269_0296_AHKT37BBXY_AGCTCGCT-GCAGAATC_S21_L006_R2_001.fastq.gz 3798003850 FASTQ R2_L006 unaligned CPTAC3 6fe7fe10-f336-4191-bc15-6b18a17733e6 5933d46aab4a6a4293ca364f7cbd9e7e { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-05907.RNA-Seq.transcriptome.Tbm.hg38 C3L-05907 AML RNA-Seq tumor_bone_marrow CPT0303930002 1b3becc6-5b1b-4b5c-95ce-517e79da79d8.rna_seq.transcriptome.gdc_realn.bam 9734597258 BAM transcriptome harmonized CPTAC3 b11e4f5f-6a8f-4160-bf09-4d0fa57ad1d5 f98ee44913388f8e340c85d0e283681c { 'aliquot_tag': 'ALQ_9e0333a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05907.WGS.Tbm C3L-05907 AML WGS tumor_bone_marrow CPT0303920002 CPT0303920002.WholeGenome.RP-2158.bam 46641710766 BAM aligned CPTAC3 4a4fda2b-3021-4dca-b7b2-e822661f7e75 4b54a710cb1acfed2bb6a825111517a1 { 'aliquot_tag': 'ALQ_a3631a11', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05907.WGS.Tbm.hg38 C3L-05907 AML WGS tumor_bone_marrow CPT0303920002 efc001f4-8713-47be-bd13-d1b3a5bee982_wgs_gdc_realn.bam 133987663938 BAM harmonized CPTAC3 07a41b7a-7841-449f-842a-afa501612e75 b85e436b70f40061296c2f0436113cfc { 'aliquot_tag': 'ALQ_a3631a11', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05907.WXS.Nbc C3L-05907 AML WXS buccal_normal CPT0303960003 CPT0303960003.WholeExome.RP-1303.bam 25378722793 BAM aligned CPTAC3 b18cfb08-33a0-464c-b73f-e4945c228554 d9b3df0ceb3869866dbbc5fa76f45766 { 'aliquot_tag': 'ALQ_21e48c47', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05907.WXS.Nbc.hg38 C3L-05907 AML WXS buccal_normal CPT0303960003 429db6f5-16c6-4aa1-925b-33d2715bb17e_wxs_gdc_realn.bam 34667825715 BAM harmonized CPTAC3 a144f235-3dd9-49e5-9645-78f7d893cc8c 640987bd25aa593209f972670172b4ac { 'aliquot_tag': 'ALQ_21e48c47', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05907.WXS.Tbm C3L-05907 AML WXS tumor_bone_marrow CPT0303920002 CPT0303920002.WholeExome.RP-1303.bam 25871164950 BAM aligned CPTAC3 7869dfb0-5064-4af0-a62d-026e9d9776e7 6062b5f18e524d061a8762d785195392 { 'aliquot_tag': 'ALQ_a3631a11', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05907.WXS.Tbm.hg38 C3L-05907 AML WXS tumor_bone_marrow CPT0303920002 efc001f4-8713-47be-bd13-d1b3a5bee982_wxs_gdc_realn.bam 36332508702 BAM harmonized CPTAC3 feddb0fb-240c-4623-8b66-abfbde61da17 36b87acae31d77ca353dc6d3814fa075 { 'aliquot_tag': 'ALQ_a3631a11', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05908.MethArray.Green.Tbm C3L-05908 AML Methylation Array tumor_bone_marrow CPT0326900002 205555390119_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a2fcc4b1-bd58-4e6e-8b4d-9687867521b4 4bf5f39353214c35e11aa41746478654 { 'aliquot_tag': 'ALQ_c9be61ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05908.MethArray.Red.Tbm C3L-05908 AML Methylation Array tumor_bone_marrow CPT0326900002 205555390119_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 d8936616-ba26-4828-9af0-0440c21371ad d63ca079e8358018bd32bf365e31d56d { 'aliquot_tag': 'ALQ_c9be61ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05908.miRNA-Seq.Tbm C3L-05908 AML miRNA-Seq tumor_bone_marrow CPT0326910002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATTCCT_S37_L008_R1_001.unaln.bam 346407918 BAM unaligned CPTAC3 e53e5139-00c7-454b-be12-008fe7e9ab7f 7cd18713a32b7de9f9cd2e34e0c2fdb8 { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05908.miRNA-Seq.Tbm.hg38 C3L-05908 AML miRNA-Seq tumor_bone_marrow CPT0326910002 4bdb201f-d813-4269-8c60-9c80e8489aa5_mirnaseq_gdc_realn.bam 361154778 BAM harmonized CPTAC3 717ff795-e0b0-4e43-9f81-b5df79209ac5 19bf0d733f50de0547ff9f02183c4cd1 { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05908.RNA-Seq.chimeric.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 2f647ca1-5f6e-4245-b25c-21e03ce4f59f.rna_seq.chimeric.gdc_realn.bam 226734045 BAM chimeric harmonized CPTAC3 a8f895d5-f31a-4082-bafe-ea7ff0552631 4e2c080cd21c486f109a9856bd35b4f9 { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05908.RNA-Seq.genomic.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 2f647ca1-5f6e-4245-b25c-21e03ce4f59f.rna_seq.genomic.gdc_realn.bam 7360414484 BAM genomic harmonized CPTAC3 2d07791b-6fab-48b8-9efc-e63a227561ba 7f3e8f7e07dde96b5bc45d054df6a514 { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05908.RNA-Seq.R1_L002.Tbm C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 210319_UNC31-K00269_0296_AHKT37BBXY_AGTACTCC-AACCTGTT_S5_L002_R1_001.fastq.gz 3657355336 FASTQ R1_L002 unaligned CPTAC3 0e1c76c8-7de2-4fd1-9057-cf88ed5ea0d2 fc0ce2c2381f96d0a4651b4ede314188 { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05908.RNA-Seq.R2_L002.Tbm C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 210319_UNC31-K00269_0296_AHKT37BBXY_AGTACTCC-AACCTGTT_S5_L002_R2_001.fastq.gz 3952540450 FASTQ R2_L002 unaligned CPTAC3 9aba5117-7ae3-416e-880d-7b1136939ec6 2c711bb750b228b827c3b4069e7a1c8b { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-05908.RNA-Seq.transcriptome.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 2f647ca1-5f6e-4245-b25c-21e03ce4f59f.rna_seq.transcriptome.gdc_realn.bam 7974858522 BAM transcriptome harmonized CPTAC3 169d2ff4-23c3-4f58-b94e-c030aadec708 2dcbd0a8dc309f6411184dc3346d85a1 { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05908.RNA-Seq.chimeric.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 838eef89-db06-4798-94c0-6d1f25329f0a.rna_seq.chimeric.gdc_realn.bam 226751873 BAM chimeric harmonized CPTAC3 0ee4ed5d-404b-4950-98d6-1f60dfe5ed61 435ba3535f59e7ecf99fcc74e48f7bab { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05908.RNA-Seq.genomic.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 838eef89-db06-4798-94c0-6d1f25329f0a.rna_seq.genomic.gdc_realn.bam 7366577667 BAM genomic harmonized CPTAC3 9b26fd17-3b35-4805-857c-9e7e646498a3 edc52fcfc7c30d88ae9bb719fb22e184 { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05908.RNA-Seq.R1_L002.Tbm C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 210319_UNC31-K00269_0296_AHKT37BBXY_AGTACTCC-AACCTGTT_S5_L002_R1_001.fastq.gz 3657355336 FASTQ R1_L002 unaligned CPTAC3 0e1c76c8-7de2-4fd1-9057-cf88ed5ea0d2 fc0ce2c2381f96d0a4651b4ede314188 { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-05908.RNA-Seq.R2_L002.Tbm C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 210319_UNC31-K00269_0296_AHKT37BBXY_AGTACTCC-AACCTGTT_S5_L002_R2_001.fastq.gz 3952540450 FASTQ R2_L002 unaligned CPTAC3 9aba5117-7ae3-416e-880d-7b1136939ec6 2c711bb750b228b827c3b4069e7a1c8b { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-05908.RNA-Seq.transcriptome.Tbm.hg38 C3L-05908 AML RNA-Seq tumor_bone_marrow CPT0326910002 838eef89-db06-4798-94c0-6d1f25329f0a.rna_seq.transcriptome.gdc_realn.bam 9190884030 BAM transcriptome harmonized CPTAC3 ef741768-323a-4f91-afae-68b8e7d2c070 02a126c45536e837b1ea2417eabc031a { 'aliquot_tag': 'ALQ_f4de481b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05908.WGS.Nbc C3L-05908 AML WGS buccal_normal CPT0326940002 CPT0326940002.WholeGenome.RP-2158.bam 53174368213 BAM aligned CPTAC3 e016a6af-ec34-4458-abb6-9919490547fb cfe0f1139c79d31384329d2931f747d7 { 'aliquot_tag': 'ALQ_3c3ec76b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05908.WGS.Nbc.hg38 C3L-05908 AML WGS buccal_normal CPT0326940002 c7516e7e-cf66-4776-9976-6c6f7f0bdacc_wgs_gdc_realn.bam 156212712773 BAM harmonized CPTAC3 7bef082d-803e-45b2-b53e-5a1399bf1b5c 34cc2456cf0ae64d6093a6ff7d00623a { 'aliquot_tag': 'ALQ_3c3ec76b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05908.WGS.Tbm C3L-05908 AML WGS tumor_bone_marrow CPT0326900002 CPT0326900002.WholeGenome.RP-2158.bam 46811904451 BAM aligned CPTAC3 9505c88e-d674-4bfe-b33c-0b0cde5e1412 a9f816f32240343a64c489bdea086dcb { 'aliquot_tag': 'ALQ_c9be61ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05908.WGS.Tbm.hg38 C3L-05908 AML WGS tumor_bone_marrow CPT0326900002 abca2316-f4ce-44b2-8fbb-13e395181439_wgs_gdc_realn.bam 141851528279 BAM harmonized CPTAC3 bb0e880d-d80c-4380-87d3-ee42c919d1cb 11df54b6e4a0ddf7815960ae16510e25 { 'aliquot_tag': 'ALQ_c9be61ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-05908.WXS.Nbc C3L-05908 AML WXS buccal_normal CPT0326940002 CPT0326940002.WholeExome.RP-1303.bam 25970906291 BAM aligned CPTAC3 d2610648-bcf0-46c4-b335-a33b90a1d16b 79d0a492049589d0cda89339dfad7106 { 'aliquot_tag': 'ALQ_3c3ec76b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-05908.WXS.Nbc.hg38 C3L-05908 AML WXS buccal_normal CPT0326940002 c7516e7e-cf66-4776-9976-6c6f7f0bdacc_wxs_gdc_realn.bam 35730190416 BAM harmonized CPTAC3 75eb2cb6-1dc2-4830-8a38-415e4fe1d03c 98f60c535c7b069b5746547e9a385bd0 { 'aliquot_tag': 'ALQ_3c3ec76b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-05908.WXS.Tbm C3L-05908 AML WXS tumor_bone_marrow CPT0326900002 CPT0326900002.WholeExome.RP-1303.bam 21302425000 BAM aligned CPTAC3 ef626016-61b3-49ec-b3cb-5be53dc4ebe7 913f591a2a0c30d7778813b189ae9377 { 'aliquot_tag': 'ALQ_c9be61ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-05908.WXS.Tbm.hg38 C3L-05908 AML WXS tumor_bone_marrow CPT0326900002 abca2316-f4ce-44b2-8fbb-13e395181439_wxs_gdc_realn.bam 29849365051 BAM harmonized CPTAC3 24bc77be-7a63-4942-a438-31028cc4fea9 89a4c09d505f0ce5d0d7eb62879fe6b6 { 'aliquot_tag': 'ALQ_c9be61ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06061.MethArray.Green.Tbm C3L-06061 AML Methylation Array tumor_bone_marrow CPT0326230002 205555390119_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4d05bfb3-9c0d-4766-98f1-9d1f86cda575 6eb3165b1f380d36d2a73ce24a95c68f { 'aliquot_tag': 'ALQ_e4d9ebb8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06061.MethArray.Red.Tbm C3L-06061 AML Methylation Array tumor_bone_marrow CPT0326230002 205555390119_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 197ccda7-f444-4f02-bdc3-ce18ae6c4889 c6ba9d606744484d8c0265333d156fac { 'aliquot_tag': 'ALQ_e4d9ebb8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06061.miRNA-Seq.Tbm C3L-06061 AML miRNA-Seq tumor_bone_marrow CPT0326240002 210331_UNC31-K00269_0297_AHKCFKBBXY_GAGTGG_S53_L008_R1_001.unaln.bam 285259644 BAM unaligned CPTAC3 cfe69a28-e93d-4b5f-96e4-cdecc79dede1 f72e798d4b3ce098745ec927b1899c98 { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06061.miRNA-Seq.Tbm.hg38 C3L-06061 AML miRNA-Seq tumor_bone_marrow CPT0326240002 c0c570e3-d0b6-4bbd-88c8-a988499694d4_mirnaseq_gdc_realn.bam 301265191 BAM harmonized CPTAC3 72aebe03-b049-43ce-821b-26bfaa7d79cf 512a2117f5261aeefd5f5020222f137c { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06061.RNA-Seq.chimeric.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 41b22bab-2184-414a-8c88-0cd7e4bfa063.rna_seq.chimeric.gdc_realn.bam 108284550 BAM chimeric harmonized CPTAC3 116a8082-4afc-4310-93ef-b5ce4aae9c4a 9f32c65f530c63dc1791ba2b24278bcf { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06061.RNA-Seq.genomic.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 41b22bab-2184-414a-8c88-0cd7e4bfa063.rna_seq.genomic.gdc_realn.bam 8048864092 BAM genomic harmonized CPTAC3 00fec3b0-7f96-46ab-95c8-73631229c43c 8028998e58d1d97a46c5d8248b2465de { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06061.RNA-Seq.R1_L003.Tbm C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 210319_UNC31-K00269_0296_AHKT37BBXY_ACTCGTGT-ATTGGAAC_S9_L003_R1_001.fastq.gz 3980290410 FASTQ R1_L003 unaligned CPTAC3 005d06a5-42a7-4ea5-ba2a-9bbbf8295f42 5cc0ad663c28f3b522c523cdbaa45c8b { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06061.RNA-Seq.R2_L003.Tbm C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 210319_UNC31-K00269_0296_AHKT37BBXY_ACTCGTGT-ATTGGAAC_S9_L003_R2_001.fastq.gz 4233823990 FASTQ R2_L003 unaligned CPTAC3 8f38d303-fb14-433f-8cc2-b6ea37044a4f dbd4e3b6907bbb5371c210016903a73f { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06061.RNA-Seq.transcriptome.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 41b22bab-2184-414a-8c88-0cd7e4bfa063.rna_seq.transcriptome.gdc_realn.bam 10235741180 BAM transcriptome harmonized CPTAC3 b218c067-f606-49e3-9615-9d8466a590bb 78406ba3baf6ce32167cc4322c0bb7cf { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06061.RNA-Seq.chimeric.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 5f185834-95c2-410b-96d5-7c5d55cc9a30.rna_seq.chimeric.gdc_realn.bam 108285959 BAM chimeric harmonized CPTAC3 f112773b-980d-4c65-99fc-302938eb49ff 3d7e66dbfc8b80d775e8616a0eb313ee { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06061.RNA-Seq.genomic.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 5f185834-95c2-410b-96d5-7c5d55cc9a30.rna_seq.genomic.gdc_realn.bam 8059507252 BAM genomic harmonized CPTAC3 045dbae3-457c-4f47-b108-2c57b4d6831e 38feaae466b1240dbcd535e351a63968 { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06061.RNA-Seq.R1_L003.Tbm C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 210319_UNC31-K00269_0296_AHKT37BBXY_ACTCGTGT-ATTGGAAC_S9_L003_R1_001.fastq.gz 3980290410 FASTQ R1_L003 unaligned CPTAC3 005d06a5-42a7-4ea5-ba2a-9bbbf8295f42 5cc0ad663c28f3b522c523cdbaa45c8b { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-06061.RNA-Seq.R2_L003.Tbm C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 210319_UNC31-K00269_0296_AHKT37BBXY_ACTCGTGT-ATTGGAAC_S9_L003_R2_001.fastq.gz 4233823990 FASTQ R2_L003 unaligned CPTAC3 8f38d303-fb14-433f-8cc2-b6ea37044a4f dbd4e3b6907bbb5371c210016903a73f { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-06061.RNA-Seq.transcriptome.Tbm.hg38 C3L-06061 AML RNA-Seq tumor_bone_marrow CPT0326240002 5f185834-95c2-410b-96d5-7c5d55cc9a30.rna_seq.transcriptome.gdc_realn.bam 11616850377 BAM transcriptome harmonized CPTAC3 5d2cc8f3-a5cc-453c-8568-0edab80bb065 eca36d716ecdb1130ed0b29b40169e81 { 'aliquot_tag': 'ALQ_56f937a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06061.WGS.Nbc C3L-06061 AML WGS buccal_normal CPT0326440002 CPT0326440002.WholeGenome.RP-2158.bam 45038125820 BAM aligned CPTAC3 580ee243-90ee-4387-ae82-44f2d90a6097 6fa528af9dc9078f6cc5bda1a5cac64c { 'aliquot_tag': 'ALQ_80a0d4b5', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06061.WGS.Nbc.hg38 C3L-06061 AML WGS buccal_normal CPT0326440002 d1ff5198-0e7d-4248-84b1-6ae7941d3f03_wgs_gdc_realn.bam 133685404348 BAM harmonized CPTAC3 d3aa2183-2a2b-49cb-94aa-722bb084d738 30d122cee6434aaf2b853f368c0185a5 { 'aliquot_tag': 'ALQ_80a0d4b5', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06061.WGS.Tbm C3L-06061 AML WGS tumor_bone_marrow CPT0326230002 CPT0326230002.WholeGenome.RP-2158.bam 44818890902 BAM aligned CPTAC3 9eb34b24-719a-44b8-823a-fb559e0eeafb e3d505b65937f21dfe7188296e5eba27 { 'aliquot_tag': 'ALQ_e4d9ebb8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06061.WGS.Tbm.hg38 C3L-06061 AML WGS tumor_bone_marrow CPT0326230002 c1ddcce6-a66e-47be-a293-652a21b03956_wgs_gdc_realn.bam 127949661212 BAM harmonized CPTAC3 df2b1538-16cb-4e8b-8347-592204bd6de2 9e3c53d99947c78c76ab7e3ae2050a63 { 'aliquot_tag': 'ALQ_e4d9ebb8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06061.WXS.Nbc C3L-06061 AML WXS buccal_normal CPT0326440002 CPT0326440002.WholeExome.RP-1303.bam 32063891291 BAM aligned CPTAC3 94c26fe2-74ee-4938-8fac-40751f5f4ddc 162c87af051423b795b0cce76ca328a2 { 'aliquot_tag': 'ALQ_80a0d4b5', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06061.WXS.Nbc.hg38 C3L-06061 AML WXS buccal_normal CPT0326440002 d1ff5198-0e7d-4248-84b1-6ae7941d3f03_wxs_gdc_realn.bam 43881323457 BAM harmonized CPTAC3 070f59df-e71c-4c18-b973-c155ce3a5387 884830626d9dfe501a60e1ba9cffa527 { 'aliquot_tag': 'ALQ_80a0d4b5', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06061.WXS.Tbm C3L-06061 AML WXS tumor_bone_marrow CPT0326230002 CPT0326230002.WholeExome.RP-1303.bam 24918016369 BAM aligned CPTAC3 e54485dd-b674-44d6-98a8-e56cec710939 d7292cecabab3599cc5b093f91690e37 { 'aliquot_tag': 'ALQ_e4d9ebb8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06061.WXS.Tbm.hg38 C3L-06061 AML WXS tumor_bone_marrow CPT0326230002 c1ddcce6-a66e-47be-a293-652a21b03956_wxs_gdc_realn.bam 34828076310 BAM harmonized CPTAC3 66892cd4-c8b6-433a-9324-1051b3fb8b30 398c4af53d84455ac83aecb32de1cc09 { 'aliquot_tag': 'ALQ_e4d9ebb8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06063.MethArray.Green.Tbm C3L-06063 AML Methylation Array tumor_bone_marrow CPT0326000002 205555380155_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 5c411da8-4b41-46ac-a3fd-bdf6c51f70ef f2d89adc27c680d97cc5f650e65455cf { 'aliquot_tag': 'ALQ_eeb13063', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06063.MethArray.Red.Tbm C3L-06063 AML Methylation Array tumor_bone_marrow CPT0326000002 205555380155_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 e849d399-7c8f-44ac-ae37-b4ed77c54aa6 afaa0e0aaf33cf6b9cc7a58bb1e20bff { 'aliquot_tag': 'ALQ_eeb13063', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06063.miRNA-Seq.Tbm C3L-06063 AML miRNA-Seq tumor_bone_marrow CPT0326010002 210702_UNC32-K00270_0289_AHKJ22BBXY_GTTTCG_S18_L001_R1_001.unaln.bam 418166477 BAM unaligned CPTAC3 6ccba838-5ba7-452d-a327-67b1de52adb5 0b7a7fb85802fc0ea8a0ab0f5242eb48 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06063.RNA-Seq.chimeric.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 a44963f2-c172-409d-8830-79c382eb880a.rna_seq.chimeric.gdc_realn.bam 127868261 BAM chimeric harmonized CPTAC3 133a9a15-5aab-414d-b69c-31ee4a9a6f91 bec462833b3e4c11b80fa854e82148e7 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06063.RNA-Seq.genomic.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 a44963f2-c172-409d-8830-79c382eb880a.rna_seq.genomic.gdc_realn.bam 7538153889 BAM genomic harmonized CPTAC3 8c6405e9-18cb-4880-a584-c42528ac2de7 9cde6df11ca8301efb8a4c0059884762 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06063.RNA-Seq.R1_L003.Tbm C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 210319_UNC31-K00269_0296_AHKT37BBXY_GCCACAGG-CATGCCAT_S11_L003_R1_001.fastq.gz 3718330896 FASTQ R1_L003 unaligned CPTAC3 cea7d79a-f245-4cff-adc5-8b40e27d01ff 88280f41cd98e2ee4da43daa44115b18 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06063.RNA-Seq.R2_L003.Tbm C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 210319_UNC31-K00269_0296_AHKT37BBXY_GCCACAGG-CATGCCAT_S11_L003_R2_001.fastq.gz 4003836171 FASTQ R2_L003 unaligned CPTAC3 d0b88942-9ee9-4d23-ac4a-1f6f6c466fd6 99acf480d377674c911b5e9f11efaef2 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06063.RNA-Seq.transcriptome.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 a44963f2-c172-409d-8830-79c382eb880a.rna_seq.transcriptome.gdc_realn.bam 8566421400 BAM transcriptome harmonized CPTAC3 74d66869-f1cf-4ec1-9e13-e73da416ed81 8b369057f7a6f46bc66b973c33405ea6 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06063.miRNA-Seq.Tbm.hg38 C3L-06063 AML miRNA-Seq tumor_bone_marrow CPT0326010002 9de0e317-ac3a-44e5-9f55-48d30c38ea3d_mirnaseq_gdc_realn.bam 440455591 BAM harmonized CPTAC3 c269c69d-af10-46c8-ad86-036ae1036c7c c03b37fc4ffa70bf60366170df5b4267 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06063.RNA-Seq.chimeric.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 f218bef2-97d5-4261-9b34-8a0a133bdaf8.rna_seq.chimeric.gdc_realn.bam 127867626 BAM chimeric harmonized CPTAC3 ee29007a-e02b-4ea2-8eec-cc5685395d37 fc231bec8d634cc431eaad3ad7c87c02 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06063.RNA-Seq.genomic.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 f218bef2-97d5-4261-9b34-8a0a133bdaf8.rna_seq.genomic.gdc_realn.bam 7549097441 BAM genomic harmonized CPTAC3 86dd292a-526f-4a8c-844d-472f4311032c 7562a06c3ce71f4da7da8e8b7036c84a { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06063.RNA-Seq.R1_L003.Tbm C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 210319_UNC31-K00269_0296_AHKT37BBXY_GCCACAGG-CATGCCAT_S11_L003_R1_001.fastq.gz 3718330896 FASTQ R1_L003 unaligned CPTAC3 cea7d79a-f245-4cff-adc5-8b40e27d01ff 88280f41cd98e2ee4da43daa44115b18 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-06063.RNA-Seq.R2_L003.Tbm C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 210319_UNC31-K00269_0296_AHKT37BBXY_GCCACAGG-CATGCCAT_S11_L003_R2_001.fastq.gz 4003836171 FASTQ R2_L003 unaligned CPTAC3 d0b88942-9ee9-4d23-ac4a-1f6f6c466fd6 99acf480d377674c911b5e9f11efaef2 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-06063.RNA-Seq.transcriptome.Tbm.hg38 C3L-06063 AML RNA-Seq tumor_bone_marrow CPT0326010002 f218bef2-97d5-4261-9b34-8a0a133bdaf8.rna_seq.transcriptome.gdc_realn.bam 9899861331 BAM transcriptome harmonized CPTAC3 f4d3b2e1-ed57-42ca-9b1f-ab9462453f82 8ea1c63d4c45c7d40c7c11f7cd27b225 { 'aliquot_tag': 'ALQ_d3d119d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06063.WGS.Nbc C3L-06063 AML WGS buccal_normal CPT0326100003 CPT0326100003.WholeGenome.RP-2158.bam 53597520767 BAM aligned CPTAC3 d0353e99-4031-4dc2-b786-d048080d503a aef1d7a1a4aad5e605682300c33f9755 { 'aliquot_tag': 'ALQ_52ead350', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06063.WGS.Nbc.hg38 C3L-06063 AML WGS buccal_normal CPT0326100003 72d8056b-83f2-4d77-88c5-c7e7d0977ae9_wgs_gdc_realn.bam 162794371517 BAM harmonized CPTAC3 b3d51cee-b87d-49f6-ab1d-58196bb20849 3952bc2bcced6abc120d617696a9575a { 'aliquot_tag': 'ALQ_52ead350', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06063.WGS.Tbm C3L-06063 AML WGS tumor_bone_marrow CPT0326000002 CPT0326000002.WholeGenome.RP-2158.bam 50051809682 BAM aligned CPTAC3 80bdc8c6-d394-47f5-b8a6-26a91cdc18f5 c6b86983db456bb71db8e1a085209dc6 { 'aliquot_tag': 'ALQ_eeb13063', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06063.WGS.Tbm.hg38 C3L-06063 AML WGS tumor_bone_marrow CPT0326000002 604ee056-6daa-49f6-a5d1-b008305502b6_wgs_gdc_realn.bam 150586264993 BAM harmonized CPTAC3 e8f9b051-60b0-4579-b572-7b85f6a049e9 6ca61890287abee39b0726074eaacaa3 { 'aliquot_tag': 'ALQ_eeb13063', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06063.WXS.Nbc C3L-06063 AML WXS buccal_normal CPT0326100003 CPT0326100003.WholeExome.RP-1303.bam 26383107486 BAM aligned CPTAC3 c053b5ea-1faa-4345-8f02-dd351cbde43a 6a684ab2a73c3e6c45d2256fd498ea29 { 'aliquot_tag': 'ALQ_52ead350', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06063.WXS.Nbc.hg38 C3L-06063 AML WXS buccal_normal CPT0326100003 72d8056b-83f2-4d77-88c5-c7e7d0977ae9_wxs_gdc_realn.bam 36806573391 BAM harmonized CPTAC3 aa330441-41ff-469b-ace7-099764cd0d6a 129f9bb7bfc9e894e7b058f94267e888 { 'aliquot_tag': 'ALQ_52ead350', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06063.WXS.Tbm C3L-06063 AML WXS tumor_bone_marrow CPT0326000002 CPT0326000002.WholeExome.RP-1303.bam 23528685414 BAM aligned CPTAC3 eaddc68b-983f-46b0-91f2-56adf6ef2202 cadc1ddbbbcdd774446cf06687595508 { 'aliquot_tag': 'ALQ_eeb13063', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06063.WXS.Tbm.hg38 C3L-06063 AML WXS tumor_bone_marrow CPT0326000002 604ee056-6daa-49f6-a5d1-b008305502b6_wxs_gdc_realn.bam 32733625918 BAM harmonized CPTAC3 91a0f789-f4cd-444a-b0d2-da59c69fb392 22be2ea7956fa2abd2af93c98578921d { 'aliquot_tag': 'ALQ_eeb13063', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06064.MethArray.Green.Tbm C3L-06064 AML Methylation Array tumor_bone_marrow CPT0326760002 205555390119_R03C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d85bcae2-cd85-4757-aba8-14b715276c73 842f9cadd4b35ee3b9282a639221f6e9 { 'aliquot_tag': 'ALQ_7cf4f57b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06064.MethArray.Red.Tbm C3L-06064 AML Methylation Array tumor_bone_marrow CPT0326760002 205555390119_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 e791a789-68cf-443a-a2e7-668b52ab6174 bcc7e84913f74a58ce847ecfe05f2d55 { 'aliquot_tag': 'ALQ_7cf4f57b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06064.miRNA-Seq.Tbm C3L-06064 AML miRNA-Seq tumor_bone_marrow CPT0326770002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATGAGC_S36_L008_R1_001.unaln.bam 303511829 BAM unaligned CPTAC3 48ae323a-8c8e-4598-949e-03a86a0e62db a4a1f14ca2f90d41c69786ee637cdf22 { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06064.miRNA-Seq.Tbm.hg38 C3L-06064 AML miRNA-Seq tumor_bone_marrow CPT0326770002 89a056cf-8357-465f-94b5-825c8d9ed9f9_mirnaseq_gdc_realn.bam 315197105 BAM harmonized CPTAC3 eed274d4-eb3e-4428-8ae0-8d9e3f0cf7f8 67d190ae6362c92393f6d63367309285 { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06064.RNA-Seq.chimeric.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 155464e2-11dc-40c5-856b-8f8fe248a83d.rna_seq.chimeric.gdc_realn.bam 156852132 BAM chimeric harmonized CPTAC3 13106665-5fe2-4d6e-b80f-722d27f08264 b1da571b2e74b6c2a2ed7842381b76e9 { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06064.RNA-Seq.genomic.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 155464e2-11dc-40c5-856b-8f8fe248a83d.rna_seq.genomic.gdc_realn.bam 7566507758 BAM genomic harmonized CPTAC3 53d9d693-1800-4c91-b3f3-ed1d17ea4a18 7d88a593f07aed2e00bc5ad2c762aa15 { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06064.RNA-Seq.R1_L002.Tbm C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGCCGGT-TAGAGCGC_S8_L002_R1_001.fastq.gz 3804957009 FASTQ R1_L002 unaligned CPTAC3 dca6015e-b9bf-4f95-bc57-dd1dcf9c8df6 644852782834649fdde13c1ada234789 { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06064.RNA-Seq.R2_L002.Tbm C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGCCGGT-TAGAGCGC_S8_L002_R2_001.fastq.gz 4107726492 FASTQ R2_L002 unaligned CPTAC3 a5178138-97f9-4d77-8c44-2497d38911dc 76f4753e59d6bc73143d35647ed87453 { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06064.RNA-Seq.transcriptome.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 155464e2-11dc-40c5-856b-8f8fe248a83d.rna_seq.transcriptome.gdc_realn.bam 8742038945 BAM transcriptome harmonized CPTAC3 3ed6a9c6-98f2-4db2-b671-c5a22bc57257 7cdf890074dbd09faf53214b6f4cfe0d { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06064.RNA-Seq.chimeric.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 5bd52fd3-6f8b-41bd-a1aa-cea5d6d2781a.rna_seq.chimeric.gdc_realn.bam 156851411 BAM chimeric harmonized CPTAC3 dabd7313-0a03-4a75-b070-b12b77fd4845 f80741f20a9009f1721ea6bc74b7d86b { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06064.RNA-Seq.genomic.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 5bd52fd3-6f8b-41bd-a1aa-cea5d6d2781a.rna_seq.genomic.gdc_realn.bam 7576158382 BAM genomic harmonized CPTAC3 89cf57d1-1d1b-4456-8578-fa898a5a053f 73dad8052ba8bd5367e600c5db0df8c2 { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06064.RNA-Seq.R1_L002.Tbm C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGCCGGT-TAGAGCGC_S8_L002_R1_001.fastq.gz 3804957009 FASTQ R1_L002 unaligned CPTAC3 dca6015e-b9bf-4f95-bc57-dd1dcf9c8df6 644852782834649fdde13c1ada234789 { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-06064.RNA-Seq.R2_L002.Tbm C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 210319_UNC31-K00269_0296_AHKT37BBXY_TGGCCGGT-TAGAGCGC_S8_L002_R2_001.fastq.gz 4107726492 FASTQ R2_L002 unaligned CPTAC3 a5178138-97f9-4d77-8c44-2497d38911dc 76f4753e59d6bc73143d35647ed87453 { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-06064.RNA-Seq.transcriptome.Tbm.hg38 C3L-06064 AML RNA-Seq tumor_bone_marrow CPT0326770002 5bd52fd3-6f8b-41bd-a1aa-cea5d6d2781a.rna_seq.transcriptome.gdc_realn.bam 10134884832 BAM transcriptome harmonized CPTAC3 65449d92-d8fd-4076-90fb-27f31279c556 20e223f75a4ab37bf62283cfa45d6e21 { 'aliquot_tag': 'ALQ_4194dccb', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06064.WGS.Nbc C3L-06064 AML WGS buccal_normal CPT0326860003 CPT0326860003.WholeGenome.RP-2158.bam 47646943334 BAM aligned CPTAC3 5de8d6ee-bb3a-4099-bcee-1ac3127bed6b 3baaabf58a329eea102129ea82d14db1 { 'aliquot_tag': 'ALQ_faa57738', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06064.WGS.Nbc.hg38 C3L-06064 AML WGS buccal_normal CPT0326860003 6455cf06-0477-4d1e-b874-c5886e4e1137_wgs_gdc_realn.bam 148389243797 BAM harmonized CPTAC3 c7599d97-a30f-463f-82c9-b3f8dfc5abbe 78e8d679bd433df6ba48c90f513dce8a { 'aliquot_tag': 'ALQ_faa57738', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06064.WGS.Tbm C3L-06064 AML WGS tumor_bone_marrow CPT0326760002 CPT0326760002.WholeGenome.RP-2158.bam 60154250259 BAM aligned CPTAC3 796237ad-048c-402e-a86f-be0aece8f77a a6aff1177420d1bcb07b52dc46fee289 { 'aliquot_tag': 'ALQ_7cf4f57b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06064.WGS.Tbm.hg38 C3L-06064 AML WGS tumor_bone_marrow CPT0326760002 0d5daf8c-90c3-4ae6-bf18-f0f960aaea8a_wgs_gdc_realn.bam 179277085556 BAM harmonized CPTAC3 57ed6f78-7ead-42e1-91d1-8922419b163c 5f538c00cb6bf127e3e5e1cd840182b6 { 'aliquot_tag': 'ALQ_7cf4f57b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06064.WXS.Nbc C3L-06064 AML WXS buccal_normal CPT0326860003 CPT0326860003.WholeExome.RP-1303.bam 27382952577 BAM aligned CPTAC3 7f3261f9-4f59-4ce5-84a3-d3d1732b0f9d 22d96fdb13d7c7dcf0279063f9e687ca { 'aliquot_tag': 'ALQ_faa57738', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06064.WXS.Nbc.hg38 C3L-06064 AML WXS buccal_normal CPT0326860003 6455cf06-0477-4d1e-b874-c5886e4e1137_wxs_gdc_realn.bam 38310534027 BAM harmonized CPTAC3 102d71ec-b7c0-4996-a48f-84e52499162d 45c2f20dc9111c07dd9b5469ecc8b5d5 { 'aliquot_tag': 'ALQ_faa57738', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06064.WXS.Tbm C3L-06064 AML WXS tumor_bone_marrow CPT0326760002 CPT0326760002.WholeExome.RP-1303.bam 26722565833 BAM aligned CPTAC3 a2bd75c1-e577-49b0-b5ae-6d3d650693ed 998b8c369c3fcef6ba214ff78d5b82ac { 'aliquot_tag': 'ALQ_7cf4f57b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06064.WXS.Tbm.hg38 C3L-06064 AML WXS tumor_bone_marrow CPT0326760002 0d5daf8c-90c3-4ae6-bf18-f0f960aaea8a_wxs_gdc_realn.bam 37309780760 BAM harmonized CPTAC3 6f021375-1a8e-4d1b-afb1-87fdf2a37bb2 b42fd632380a61e23c684af1893b4167 { 'aliquot_tag': 'ALQ_7cf4f57b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06066.MethArray.Green.Tbm C3L-06066 AML Methylation Array tumor_bone_marrow CPT0357240002 205555380179_R07C01_Grn.idat 13677960 IDAT Green NA CPTAC3 9e33f0ed-7fa0-48b8-a910-44822080d435 88615e964fe9863484eb12bc40096648 { 'aliquot_tag': 'ALQ_fa4b3505', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06066.MethArray.Red.Tbm C3L-06066 AML Methylation Array tumor_bone_marrow CPT0357240002 205555380179_R07C01_Red.idat 13677960 IDAT Red NA CPTAC3 c97e0731-c9d3-4e78-9334-82f9acfef6cc aea871923b9db88875ad92c24449b916 { 'aliquot_tag': 'ALQ_fa4b3505', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06066.miRNA-Seq.Tbm C3L-06066 AML miRNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC31-K00269_0297_AHKCFKBBXY_CGGAAT_S47_L008_R1_001.unaln.bam 322066097 BAM unaligned CPTAC3 976b3234-2b27-49bf-92a7-26eb02ad7dab 7178032d101a09bf537a06e12be80ce7 { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06066.miRNA-Seq.Tbm.hg38 C3L-06066 AML miRNA-Seq tumor_bone_marrow CPT0357250002 4e934679-7371-4d9c-9af1-efbe8f0244eb_mirnaseq_gdc_realn.bam 333344963 BAM harmonized CPTAC3 ee812da5-17d6-435e-9270-49c862f026aa be4eabd9f165e188ce5e5aaec14ba085 { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06066.RNA-Seq.chimeric.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 92d50e82-e474-4065-959f-8f9bc7df4f27.rna_seq.chimeric.gdc_realn.bam 46103052 BAM chimeric harmonized CPTAC3 445536f4-5b33-497c-80a0-67f2d1238342 6a1ef06b95188bed32f2443d8fc8fea4 { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06066.RNA-Seq.genomic.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 92d50e82-e474-4065-959f-8f9bc7df4f27.rna_seq.genomic.gdc_realn.bam 9123422305 BAM genomic harmonized CPTAC3 4775ddc8-4749-4e50-a344-3e4bb79519f4 9c37df3dfca654f25f8d32f71c0ab8ae { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06066.RNA-Seq.R1_L006.Tbm C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGGTTATA-CAGTTCCG_S21_L006_R1_001.fastq.gz 3526785750 FASTQ R1_L006 unaligned CPTAC3 aca652c7-2628-4911-b25c-6c1796845e9f fb6fc15d437c046478f9d8bc74ebb0e3 { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06066.RNA-Seq.R2_L006.Tbm C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGGTTATA-CAGTTCCG_S21_L006_R2_001.fastq.gz 3869519987 FASTQ R2_L006 unaligned CPTAC3 cbe87ee5-b45b-41f0-9a70-0b3ed678013a 8a5206d8a40f6c19ff4f602fe1a4abd8 { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06066.RNA-Seq.transcriptome.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 92d50e82-e474-4065-959f-8f9bc7df4f27.rna_seq.transcriptome.gdc_realn.bam 10738108694 BAM transcriptome harmonized CPTAC3 1ad5ca25-533e-47e6-8c18-00424c13266b ecca3c15a5620fb123377c9387622356 { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06066.RNA-Seq.chimeric.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 75e7c0ce-03b7-4596-b369-5ded1f74f703.rna_seq.chimeric.gdc_realn.bam 46123884 BAM chimeric harmonized CPTAC3 697866f1-68f4-415f-bbee-8dfbd63406e8 034c86a92fa329b5e2a170f116b0548e { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06066.RNA-Seq.genomic.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 75e7c0ce-03b7-4596-b369-5ded1f74f703.rna_seq.genomic.gdc_realn.bam 9156038467 BAM genomic harmonized CPTAC3 f1acb2c3-ee3e-4163-844b-2168eb39c07f 2fd84ea02e3038275f6a4e04202fd11e { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06066.RNA-Seq.R1_L006.Tbm C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGGTTATA-CAGTTCCG_S21_L006_R1_001.fastq.gz 3526785750 FASTQ R1_L006 unaligned CPTAC3 aca652c7-2628-4911-b25c-6c1796845e9f fb6fc15d437c046478f9d8bc74ebb0e3 { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-06066.RNA-Seq.R2_L006.Tbm C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGGTTATA-CAGTTCCG_S21_L006_R2_001.fastq.gz 3869519987 FASTQ R2_L006 unaligned CPTAC3 cbe87ee5-b45b-41f0-9a70-0b3ed678013a 8a5206d8a40f6c19ff4f602fe1a4abd8 { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-06066.RNA-Seq.transcriptome.Tbm.hg38 C3L-06066 AML RNA-Seq tumor_bone_marrow CPT0357250002 75e7c0ce-03b7-4596-b369-5ded1f74f703.rna_seq.transcriptome.gdc_realn.bam 12432280891 BAM transcriptome harmonized CPTAC3 c993364e-ea71-4647-be46-d96c84c198b4 38ff2bb6581e65bafc1014e2045667e7 { 'aliquot_tag': 'ALQ_c72b1cb5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06066.WGS.Nbc C3L-06066 AML WGS buccal_normal CPT0357210003 CPT0357210003.WholeGenome.RP-2158.bam 62584670310 BAM aligned CPTAC3 3254a2b2-7ca8-4335-a5ac-d042c99b3d23 158eaeeef6b4b7461813ad45cc34b40b { 'aliquot_tag': 'ALQ_45ac8ae3', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06066.WGS.Nbc.hg38 C3L-06066 AML WGS buccal_normal CPT0357210003 715ad9e3-20b9-4d61-ac08-9e270e702221_wgs_gdc_realn.bam 187368132645 BAM harmonized CPTAC3 f015cef4-ab99-40e9-8dcc-17dd4af0bbb4 febfad9a8de017901b69ae5a1bd7f963 { 'aliquot_tag': 'ALQ_45ac8ae3', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06066.WGS.Tbm C3L-06066 AML WGS tumor_bone_marrow CPT0357240002 CPT0357240002.WholeGenome.RP-2158.bam 46720735315 BAM aligned CPTAC3 a2c661e4-9409-4084-ab6b-77d736af6b4c 6789f53a73335a9daf11808381fb6672 { 'aliquot_tag': 'ALQ_fa4b3505', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06066.WGS.Tbm.hg38 C3L-06066 AML WGS tumor_bone_marrow CPT0357240002 d00c0f65-d9dd-43d0-adb6-d3dd41f03940_wgs_gdc_realn.bam 141804091849 BAM harmonized CPTAC3 ef8c9afd-27b8-4c74-abda-f2a080cbe817 aa196d974718a88438cea144ba530737 { 'aliquot_tag': 'ALQ_fa4b3505', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06066.WXS.Tbm C3L-06066 AML WXS tumor_bone_marrow CPT0357240002 CPT0357240002.WholeExome.RP-1303.bam 25806421192 BAM aligned CPTAC3 447f6532-6aac-471b-9ec4-c058e4e3508b 6170bbd9ddcf95c5bee50e675adc91c4 { 'aliquot_tag': 'ALQ_fa4b3505', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06066.WXS.Tbm.hg38 C3L-06066 AML WXS tumor_bone_marrow CPT0357240002 d00c0f65-d9dd-43d0-adb6-d3dd41f03940_wxs_gdc_realn.bam 35975603903 BAM harmonized CPTAC3 d306a386-fbc8-4b3c-aaba-62bafef3fc4f 505d57cef384aa54bfd0cab30c25bac6 { 'aliquot_tag': 'ALQ_fa4b3505', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06067.MethArray.Green.Tbm C3L-06067 AML Methylation Array tumor_bone_marrow CPT0326980002 205555390164_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 e740268d-b2cb-47ad-9dce-d477a604a168 4626bf80eb40376bd8287324c3634ad0 { 'aliquot_tag': 'ALQ_f9ce2a6a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06067.MethArray.Red.Tbm C3L-06067 AML Methylation Array tumor_bone_marrow CPT0326980002 205555390164_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 7cbdb029-d1f6-4df2-a32c-f92dfcfab352 57d3e963448a6a9101312846de0fcb33 { 'aliquot_tag': 'ALQ_f9ce2a6a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06067.miRNA-Seq.Tbm C3L-06067 AML miRNA-Seq tumor_bone_marrow CPT0326990002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAAAAG_S38_L008_R1_001.unaln.bam 250003310 BAM unaligned CPTAC3 a57f59e0-0e1d-4bcc-a6f5-a0e3ad4df017 48f248e664d1ae8847c05b8725ec394b { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06067.miRNA-Seq.Tbm.hg38 C3L-06067 AML miRNA-Seq tumor_bone_marrow CPT0326990002 0ff47398-678b-4d0e-8763-f24dbcbe9edf_mirnaseq_gdc_realn.bam 260044163 BAM harmonized CPTAC3 a9d7f8e6-f149-4738-b29b-60e892d1518d e49ae0726bbdd04dc47458b45c874e30 { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06067.RNA-Seq.chimeric.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 c204c232-a476-4dba-91e7-60cfb711895a.rna_seq.chimeric.gdc_realn.bam 130649569 BAM chimeric harmonized CPTAC3 a0a27623-168f-4166-99c8-0c770d875b30 7ec0b731ebde3e97c1e7e5f194e3e587 { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06067.RNA-Seq.genomic.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 c204c232-a476-4dba-91e7-60cfb711895a.rna_seq.genomic.gdc_realn.bam 5784385452 BAM genomic harmonized CPTAC3 26c39cee-f525-4de5-974f-09d260496300 611c67b827ce75ffe2555aff50fc4bce { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06067.RNA-Seq.R1_L002.Tbm C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 210319_UNC31-K00269_0296_AHKT37BBXY_GACGTCTT-GGTTCACC_S7_L002_R1_001.fastq.gz 2916957806 FASTQ R1_L002 unaligned CPTAC3 89954f3c-da45-438a-b8a2-7dc1ad42230c 26dfc5c5b58d5d860460f09156127f35 { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06067.RNA-Seq.R2_L002.Tbm C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 210319_UNC31-K00269_0296_AHKT37BBXY_GACGTCTT-GGTTCACC_S7_L002_R2_001.fastq.gz 3143692869 FASTQ R2_L002 unaligned CPTAC3 65b1537c-fbda-4372-b0a8-e3d8439618ac bd0d0e84d5c5fe95a89e7f5eaf59a31d { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06067.RNA-Seq.transcriptome.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 c204c232-a476-4dba-91e7-60cfb711895a.rna_seq.transcriptome.gdc_realn.bam 8681040947 BAM transcriptome harmonized CPTAC3 5186ae58-b0f6-41a5-9ff0-2bc1867324bf 1c631ffdf2eccf75b274f4b0919eb640 { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06067.RNA-Seq.chimeric.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 e6e2dee8-91b3-496d-a3b7-359babb220ed.rna_seq.chimeric.gdc_realn.bam 130652719 BAM chimeric harmonized CPTAC3 cdb54dcc-c900-4bb2-b32b-7265c2b84e7e 2d7ff1fbc73be16976fc99c76bb81919 { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06067.RNA-Seq.genomic.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 e6e2dee8-91b3-496d-a3b7-359babb220ed.rna_seq.genomic.gdc_realn.bam 5793716140 BAM genomic harmonized CPTAC3 76fdcab6-4430-4d0f-8ce3-b9a9f8b2e543 1b66b24d6a051d3bdd73de89c54c5f42 { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06067.RNA-Seq.R1_L002.Tbm C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 210319_UNC31-K00269_0296_AHKT37BBXY_GACGTCTT-GGTTCACC_S7_L002_R1_001.fastq.gz 2916957806 FASTQ R1_L002 unaligned CPTAC3 89954f3c-da45-438a-b8a2-7dc1ad42230c 26dfc5c5b58d5d860460f09156127f35 { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-06067.RNA-Seq.R2_L002.Tbm C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 210319_UNC31-K00269_0296_AHKT37BBXY_GACGTCTT-GGTTCACC_S7_L002_R2_001.fastq.gz 3143692869 FASTQ R2_L002 unaligned CPTAC3 65b1537c-fbda-4372-b0a8-e3d8439618ac bd0d0e84d5c5fe95a89e7f5eaf59a31d { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-06067.RNA-Seq.transcriptome.Tbm.hg38 C3L-06067 AML RNA-Seq tumor_bone_marrow CPT0326990002 e6e2dee8-91b3-496d-a3b7-359babb220ed.rna_seq.transcriptome.gdc_realn.bam 9999522708 BAM transcriptome harmonized CPTAC3 4a0d208c-d235-4959-868f-5b67def35068 f48f2d5b6903e1aa67b84089ad117124 { 'aliquot_tag': 'ALQ_c4ae03da', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06067.WGS.Nbc C3L-06067 AML WGS buccal_normal CPT0327010002 CPT0327010002.WholeGenome.RP-2158.bam 63299846865 BAM aligned CPTAC3 80171bd1-5ae0-419a-8bec-e17eb811e481 c323e8e2b15019f5e050a67165d74b15 { 'aliquot_tag': 'ALQ_75a61267', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06067.WGS.Nbc.hg38 C3L-06067 AML WGS buccal_normal CPT0327010002 cb29e5c2-b79b-4190-b779-a0279f80e165_wgs_gdc_realn.bam 190916611988 BAM harmonized CPTAC3 dfd184ff-b179-4ab5-9587-83ed28776f05 1a0500ea36a7d6746e290e484bc1c2d5 { 'aliquot_tag': 'ALQ_75a61267', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06067.WGS.Tbm C3L-06067 AML WGS tumor_bone_marrow CPT0326980002 CPT0326980002.WholeGenome.RP-2158.bam 51421134127 BAM aligned CPTAC3 7c2f50d9-3ffa-41c3-9a44-0ab9fbaaa51e 622147b8d426a0eb74e2130c579cee75 { 'aliquot_tag': 'ALQ_f9ce2a6a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06067.WGS.Tbm.hg38 C3L-06067 AML WGS tumor_bone_marrow CPT0326980002 f522dd61-ba96-4a7c-b014-8702b6f2f61d_wgs_gdc_realn.bam 152940156602 BAM harmonized CPTAC3 7fa81a7c-59ad-4ece-a675-850df0bae7c2 59c56d14f2d16d4b48f122b55766c7da { 'aliquot_tag': 'ALQ_f9ce2a6a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06067.WXS.Nbc C3L-06067 AML WXS buccal_normal CPT0327010002 CPT0327010002.WholeExome.RP-1303.bam 28138809935 BAM aligned CPTAC3 d2fcb3e6-ffa5-46dc-bac5-98b460e0110a 8beb61b3c7fe37622c55b6b384088b9a { 'aliquot_tag': 'ALQ_75a61267', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06067.WXS.Nbc.hg38 C3L-06067 AML WXS buccal_normal CPT0327010002 cb29e5c2-b79b-4190-b779-a0279f80e165_wxs_gdc_realn.bam 38364605151 BAM harmonized CPTAC3 57e18e83-d70b-4032-8ffd-f1406162100c 7b0a1a88edaf3b3a23b0ef97dd933fd2 { 'aliquot_tag': 'ALQ_75a61267', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06067.WXS.Tbm C3L-06067 AML WXS tumor_bone_marrow CPT0326980002 CPT0326980002.WholeExome.RP-1303.bam 27141790097 BAM aligned CPTAC3 325a8e13-4f00-4e59-b48c-6731edc1a592 dfc9892184da832ca3648d5a243fb0c1 { 'aliquot_tag': 'ALQ_f9ce2a6a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06067.WXS.Tbm.hg38 C3L-06067 AML WXS tumor_bone_marrow CPT0326980002 f522dd61-ba96-4a7c-b014-8702b6f2f61d_wxs_gdc_realn.bam 36584986067 BAM harmonized CPTAC3 0efcd816-766f-4cdb-b30e-1c99b7818e59 a54ee08d2a4afe7525952924228410e5 { 'aliquot_tag': 'ALQ_f9ce2a6a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06068.MethArray.Green.Tbm C3L-06068 AML Methylation Array tumor_bone_marrow CPT0326620002 205555390164_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6e81144c-4ae5-4d68-85c1-9b9a35a28f4c 3d1d688483357555deed93a1e557a00b { 'aliquot_tag': 'ALQ_4228801e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06068.MethArray.Red.Tbm C3L-06068 AML Methylation Array tumor_bone_marrow CPT0326620002 205555390164_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 5e7e816b-dcd5-4f14-ac05-ff6788bfdee7 854a0554d0700777caf7fe84411fa978 { 'aliquot_tag': 'ALQ_4228801e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06068.miRNA-Seq.Tbm C3L-06068 AML miRNA-Seq tumor_bone_marrow CPT0326630002 210331_UNC31-K00269_0297_AHKCFKBBXY_ACTGAT_S35_L008_R1_001.unaln.bam 324256416 BAM unaligned CPTAC3 ff8b73ac-dbd5-45b9-b196-ec0f48c0c007 42abbf8fe675491f980ccc0a623e4330 { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06068.miRNA-Seq.Tbm.hg38 C3L-06068 AML miRNA-Seq tumor_bone_marrow CPT0326630002 aa56926f-e975-4d12-888c-58b27cdef030_mirnaseq_gdc_realn.bam 337334228 BAM harmonized CPTAC3 10ade2b7-5023-4003-a46b-3279db2e5712 b1c0ee0f9faeff5dc4add8c47943b1ae { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06068.RNA-Seq.chimeric.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.chimeric.gdc_realn.bam 178792879 BAM chimeric harmonized CPTAC3 6715d7ee-1852-49f1-bfae-42bbc215ec1a 03df04b29a02d29be35c9fcfbf6eeb63 { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06068.RNA-Seq.genomic.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.genomic.gdc_realn.bam 6844058343 BAM genomic harmonized CPTAC3 021a0b24-2009-423b-98fa-199288dca752 ff94a2f54a2df16f3fcb11d0f00d0f93 { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06068.RNA-Seq.R1_L002.Tbm C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 210319_UNC31-K00269_0296_AHKT37BBXY_CAATTAAC-CGAGATAT_S6_L002_R1_001.fastq.gz 3486498695 FASTQ R1_L002 unaligned CPTAC3 3c677a8d-3ac0-4ae0-abb2-c7df39a91396 a10bca04a94ebee138fbe9f3fc1e608f { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06068.RNA-Seq.R2_L002.Tbm C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 210319_UNC31-K00269_0296_AHKT37BBXY_CAATTAAC-CGAGATAT_S6_L002_R2_001.fastq.gz 3686557876 FASTQ R2_L002 unaligned CPTAC3 595a29b0-a6b9-4462-b007-c0bbaa069d36 c7dd4500cf03b095720405917f3281db { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06068.RNA-Seq.transcriptome.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.transcriptome.gdc_realn.bam 10250119743 BAM transcriptome harmonized CPTAC3 3a2763ac-8846-4ef5-abea-86618d5bb869 3252c1f068705d8d2ccff34ad63c0e8d { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06068.RNA-Seq.chimeric.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.chimeric.gdc_realn.bam 178792879 BAM chimeric harmonized CPTAC3 b118a971-9f6b-4625-95d2-79a7247407ca 03df04b29a02d29be35c9fcfbf6eeb63 { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06068.RNA-Seq.genomic.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.genomic.gdc_realn.bam 6844058343 BAM genomic harmonized CPTAC3 3ad851fa-7d91-45fd-b114-80243f1e04df ff94a2f54a2df16f3fcb11d0f00d0f93 { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06068.RNA-Seq.R1_L002.Tbm C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 210319_UNC31-K00269_0296_AHKT37BBXY_CAATTAAC-CGAGATAT_S6_L002_R1_001.fastq.gz 3486498695 FASTQ R1_L002 unaligned CPTAC3 3c677a8d-3ac0-4ae0-abb2-c7df39a91396 a10bca04a94ebee138fbe9f3fc1e608f { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-06068.RNA-Seq.R2_L002.Tbm C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 210319_UNC31-K00269_0296_AHKT37BBXY_CAATTAAC-CGAGATAT_S6_L002_R2_001.fastq.gz 3686557876 FASTQ R2_L002 unaligned CPTAC3 595a29b0-a6b9-4462-b007-c0bbaa069d36 c7dd4500cf03b095720405917f3281db { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-06068.RNA-Seq.transcriptome.Tbm.hg38 C3L-06068 AML RNA-Seq tumor_bone_marrow CPT0326630002 8c4eac9b-59b5-410c-9854-ea20f6b92754.rna_seq.transcriptome.gdc_realn.bam 10250119743 BAM transcriptome harmonized CPTAC3 fc3d5db8-4296-4def-8eb0-6f133f58890d 3252c1f068705d8d2ccff34ad63c0e8d { 'aliquot_tag': 'ALQ_7f48a9ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06068.WGS.Nbc C3L-06068 AML WGS buccal_normal CPT0326720003 CPT0326720003.WholeGenome.RP-2158.bam 49640336441 BAM aligned CPTAC3 a7cfe390-04fe-4688-85fe-267603eea235 deb843257083fa909f2f0fc18bdd6abd { 'aliquot_tag': 'ALQ_fe73632d', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06068.WGS.Nbc.hg38 C3L-06068 AML WGS buccal_normal CPT0326720003 97ab5be9-f390-43ec-8d39-bdd5dbfb42fd_wgs_gdc_realn.bam 146224563454 BAM harmonized CPTAC3 f1b8e0e8-78c2-4480-b230-d7d243dcae43 8d87540f830386555badfef8b11d308e { 'aliquot_tag': 'ALQ_fe73632d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06068.WGS.Tbm C3L-06068 AML WGS tumor_bone_marrow CPT0326620002 CPT0326620002.WholeGenome.RP-2158.bam 47741264692 BAM aligned CPTAC3 8f7b43f4-955f-47ed-b1c0-1d3c213960c5 efd1b6e3064740691296088b7a760bf9 { 'aliquot_tag': 'ALQ_4228801e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06068.WGS.Tbm.hg38 C3L-06068 AML WGS tumor_bone_marrow CPT0326620002 c8241e1e-f164-4510-9868-d017ca302616_wgs_gdc_realn.bam 141454550444 BAM harmonized CPTAC3 aa7b5688-3e56-4228-becf-ccb94c76f378 78ccbb6be2c6d8932e1192d2efd02948 { 'aliquot_tag': 'ALQ_4228801e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06068.WXS.Tbm C3L-06068 AML WXS tumor_bone_marrow CPT0326620002 CPT0326620002.WholeExome.RP-1303.bam 25131898026 BAM aligned CPTAC3 705d0735-bf87-40f6-b451-02f29f4e7920 ff4e2f156d956f2862bc3edc7feadd3b { 'aliquot_tag': 'ALQ_4228801e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06068.WXS.Tbm.hg38 C3L-06068 AML WXS tumor_bone_marrow CPT0326620002 c8241e1e-f164-4510-9868-d017ca302616_wxs_gdc_realn.bam 34521151968 BAM harmonized CPTAC3 dfc4764a-1578-4e82-afad-b6f49abf1732 63ded636c7129e529f737aa6fbc2caaf { 'aliquot_tag': 'ALQ_4228801e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06069.MethArray.Green.Tbm C3L-06069 AML Methylation Array tumor_bone_marrow CPT0326480002 205555390174_R04C01_Grn.idat 13677965 IDAT Green NA CPTAC3 13d7236e-23d9-4789-9b51-b869a122087a b03c56c6969c0c8451ba7e4a1ac00c2f { 'aliquot_tag': 'ALQ_455039b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06069.MethArray.Red.Tbm C3L-06069 AML Methylation Array tumor_bone_marrow CPT0326480002 205555390174_R04C01_Red.idat 13677965 IDAT Red NA CPTAC3 895e134f-9e5b-4960-a188-7f2e23583831 796be5c959b7d86b71cfd710c1bfb275 { 'aliquot_tag': 'ALQ_455039b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06069.miRNA-Seq.Tbm C3L-06069 AML miRNA-Seq tumor_bone_marrow CPT0326490002 210331_UNC31-K00269_0297_AHKCFKBBXY_GGTAGC_S54_L008_R1_001.unaln.bam 417794877 BAM unaligned CPTAC3 78e537d0-0ca0-497a-98d1-96ba73ff6676 230a7dbc4e4b10f9d5a0f4348d1e6146 { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06069.miRNA-Seq.Tbm.hg38 C3L-06069 AML miRNA-Seq tumor_bone_marrow CPT0326490002 03604858-e119-48f8-a163-cd958b763427_mirnaseq_gdc_realn.bam 442088582 BAM harmonized CPTAC3 e97a811f-3ded-4679-bcbb-1d509fa0756d b7fa6aa0c5eece9a41bfdff7eda0cd52 { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06069.RNA-Seq.chimeric.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 36eba926-9018-4ace-a583-b6ee8c8d50b8.rna_seq.chimeric.gdc_realn.bam 162950233 BAM chimeric harmonized CPTAC3 3f42034a-4dbe-4f83-a324-e649178adc8e 0571b2408b953129947bce22ffa5dea8 { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06069.RNA-Seq.genomic.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 36eba926-9018-4ace-a583-b6ee8c8d50b8.rna_seq.genomic.gdc_realn.bam 7134132369 BAM genomic harmonized CPTAC3 fb6b55ed-f1d3-407e-a70a-605f02bdb159 7e2e08b1c30bc7ee6c9dd0062a70f39f { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06069.RNA-Seq.R1_L003.Tbm C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 210319_UNC31-K00269_0296_AHKT37BBXY_GTCTACAC-GCCAAGGT_S12_L003_R1_001.fastq.gz 3577663162 FASTQ R1_L003 unaligned CPTAC3 09a525b6-cb9f-43eb-9c3c-a1a77e10456c 4b94abcc256d4e1148c37ca3687b1891 { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06069.RNA-Seq.R2_L003.Tbm C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 210319_UNC31-K00269_0296_AHKT37BBXY_GTCTACAC-GCCAAGGT_S12_L003_R2_001.fastq.gz 3899204966 FASTQ R2_L003 unaligned CPTAC3 8a9086a9-e3d9-408d-aeb8-162c800d364c 765ee9118d2efb5e5c1820776c160d58 { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06069.RNA-Seq.transcriptome.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 36eba926-9018-4ace-a583-b6ee8c8d50b8.rna_seq.transcriptome.gdc_realn.bam 8390266148 BAM transcriptome harmonized CPTAC3 0b25658c-221f-41d4-9d77-cd58bc287884 6714ad483e982e7d3fc5549d8d6606eb { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06069.RNA-Seq.chimeric.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 b2065556-83b5-449a-b65b-8eb4c94bd04c.rna_seq.chimeric.gdc_realn.bam 162952070 BAM chimeric harmonized CPTAC3 9fa49615-8105-45d6-81aa-351d697a4cc0 c12def11978125440512d7213041e97d { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06069.RNA-Seq.genomic.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 b2065556-83b5-449a-b65b-8eb4c94bd04c.rna_seq.genomic.gdc_realn.bam 7143808309 BAM genomic harmonized CPTAC3 b9b615dc-3e66-4d8d-9fad-87b72c3a3df3 7c37ef28cbdd923dad6c9dcc030de9c2 { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06069.RNA-Seq.R1_L003.Tbm C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 210319_UNC31-K00269_0296_AHKT37BBXY_GTCTACAC-GCCAAGGT_S12_L003_R1_001.fastq.gz 3577663162 FASTQ R1_L003 unaligned CPTAC3 09a525b6-cb9f-43eb-9c3c-a1a77e10456c 4b94abcc256d4e1148c37ca3687b1891 { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-06069.RNA-Seq.R2_L003.Tbm C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 210319_UNC31-K00269_0296_AHKT37BBXY_GTCTACAC-GCCAAGGT_S12_L003_R2_001.fastq.gz 3899204966 FASTQ R2_L003 unaligned CPTAC3 8a9086a9-e3d9-408d-aeb8-162c800d364c 765ee9118d2efb5e5c1820776c160d58 { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-06069.RNA-Seq.transcriptome.Tbm.hg38 C3L-06069 AML RNA-Seq tumor_bone_marrow CPT0326490002 b2065556-83b5-449a-b65b-8eb4c94bd04c.rna_seq.transcriptome.gdc_realn.bam 9747365613 BAM transcriptome harmonized CPTAC3 1cd2e81c-cbf3-4a27-8fb0-ed486d2b00dc 6a75328dc3c95ffa80541f56bad725a1 { 'aliquot_tag': 'ALQ_78301004', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06069.WGS.Nbc C3L-06069 AML WGS buccal_normal CPT0326580003 CPT0326580003.WholeGenome.RP-2158.bam 53615171679 BAM aligned CPTAC3 e3cfe7e9-6e50-42fc-929d-bf43b981e320 dffe1549bd1f691e2b2fcdc782f5e6aa { 'aliquot_tag': 'ALQ_f90bda87', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06069.WGS.Nbc.hg38 C3L-06069 AML WGS buccal_normal CPT0326580003 f15999aa-0027-403b-a9fc-a857a8d6a6f9_wgs_gdc_realn.bam 151945577645 BAM harmonized CPTAC3 fdc8d9db-7c70-44f3-b4bf-79729d61e81e f187987b67452499c0ee77c5dd086bdc { 'aliquot_tag': 'ALQ_f90bda87', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06069.WGS.Tbm C3L-06069 AML WGS tumor_bone_marrow CPT0326480002 CPT0326480002.WholeGenome.RP-2158.bam 46010740514 BAM aligned CPTAC3 9a18c80e-e80d-4cbc-86df-0657b38f6ac2 139effafd536f80fe3d845fdc987b094 { 'aliquot_tag': 'ALQ_455039b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06069.WGS.Tbm.hg38 C3L-06069 AML WGS tumor_bone_marrow CPT0326480002 06fe9d1b-c1b5-4322-a066-3d1a7b4bb0bb_wgs_gdc_realn.bam 134457839495 BAM harmonized CPTAC3 6479fcbc-6431-49c3-bb94-71a681a7438f 32fab0d1c87f0b2eb06027199a69a91a { 'aliquot_tag': 'ALQ_455039b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06069.WXS.Nbc C3L-06069 AML WXS buccal_normal CPT0326580003 CPT0326580003.WholeExome.RP-1303.bam 18561670905 BAM aligned CPTAC3 9252d635-14f8-43ad-ad52-ee7f5cca3939 fded3cd361beec1bd499927deab16cb9 { 'aliquot_tag': 'ALQ_f90bda87', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06069.WXS.Nbc.hg38 C3L-06069 AML WXS buccal_normal CPT0326580003 f15999aa-0027-403b-a9fc-a857a8d6a6f9_wxs_gdc_realn.bam 26206772341 BAM harmonized CPTAC3 0bc45139-a05c-4cb0-bbf0-3218db271cdb 7a67672061108ec8624ce67995e8c977 { 'aliquot_tag': 'ALQ_f90bda87', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06069.WXS.Tbm C3L-06069 AML WXS tumor_bone_marrow CPT0326480002 CPT0326480002.WholeExome.RP-1303.bam 25721247083 BAM aligned CPTAC3 8aa1f14e-449e-4d81-8958-07b59ac5be6d df12918bccbb89aa8afd50445dbd4edd { 'aliquot_tag': 'ALQ_455039b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06069.WXS.Tbm.hg38 C3L-06069 AML WXS tumor_bone_marrow CPT0326480002 06fe9d1b-c1b5-4322-a066-3d1a7b4bb0bb_wxs_gdc_realn.bam 35693747490 BAM harmonized CPTAC3 ea93f57a-46ae-421b-9902-3cb89ecb4202 029109bbb29ad8310c1f553eec8d49a4 { 'aliquot_tag': 'ALQ_455039b4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06070.MethArray.Green.Tbm C3L-06070 AML Methylation Array tumor_bone_marrow CPT0326140002 205555380155_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 eb56e03b-a2b8-4e1d-9089-58464e359ed3 39e095bcdabe469d26c1798931caa512 { 'aliquot_tag': 'ALQ_d06d4506', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06070.MethArray.Red.Tbm C3L-06070 AML Methylation Array tumor_bone_marrow CPT0326140002 205555380155_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 9a1c1f96-c8a3-48fb-bd1d-a69b2921d08a 4636dadd45351367a3b1f16be0ec94f9 { 'aliquot_tag': 'ALQ_d06d4506', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06070.miRNA-Seq.Tbm C3L-06070 AML miRNA-Seq tumor_bone_marrow CPT0326150002 210331_UNC31-K00269_0297_AHKCFKBBXY_CGTACG_S48_L008_R1_001.unaln.bam 249608659 BAM unaligned CPTAC3 50e7cc38-f5dc-4a66-897b-3785cf126440 5bbf63ea2cbdc495c5760d7f00d042ae { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06070.miRNA-Seq.Tbm.hg38 C3L-06070 AML miRNA-Seq tumor_bone_marrow CPT0326150002 d276219f-aabe-4991-926e-cecbb171f87a_mirnaseq_gdc_realn.bam 261877772 BAM harmonized CPTAC3 43c1b86e-e24f-410b-a2c1-bb51a62f1e9d 8742bcc7d33adc40ae99d28b4cd3c44e { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06070.RNA-Seq.chimeric.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 45fd5310-b003-4aa1-bdd6-6c4ae9bcc0e1.rna_seq.chimeric.gdc_realn.bam 98664662 BAM chimeric harmonized CPTAC3 e63ffadc-dff8-4244-b697-c3516475b0aa 734050916bacdb2785cac5e26e77e93b { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06070.RNA-Seq.genomic.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 45fd5310-b003-4aa1-bdd6-6c4ae9bcc0e1.rna_seq.genomic.gdc_realn.bam 6500357059 BAM genomic harmonized CPTAC3 dd0f3b19-5c7c-443c-82eb-4254c7d59e54 50c4275b554b6e8cb1a5df3a5ba51c62 { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06070.RNA-Seq.R1_L003.Tbm C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 210319_UNC31-K00269_0296_AHKT37BBXY_ATTGTGAA-TGCATTGC_S10_L003_R1_001.fastq.gz 3218158809 FASTQ R1_L003 unaligned CPTAC3 e971ec7c-cdd4-4dc7-a1fc-4441d77fefc9 b7bf196035031901bf88e90fec032c00 { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06070.RNA-Seq.R2_L003.Tbm C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 210319_UNC31-K00269_0296_AHKT37BBXY_ATTGTGAA-TGCATTGC_S10_L003_R2_001.fastq.gz 3422155076 FASTQ R2_L003 unaligned CPTAC3 ff2b4fc1-70a1-4d38-86a8-672a3a312966 ab10dc44806219cb7e6d648a999e0f8c { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06070.RNA-Seq.transcriptome.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 45fd5310-b003-4aa1-bdd6-6c4ae9bcc0e1.rna_seq.transcriptome.gdc_realn.bam 8201954483 BAM transcriptome harmonized CPTAC3 d00ec81d-2104-4c46-a439-2cf0042d3983 5623dee8dd1e5911f8307b75254cf0c2 { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06070.RNA-Seq.chimeric.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 5a38129a-7239-4d14-b409-76e0f3062a9f.rna_seq.chimeric.gdc_realn.bam 98661132 BAM chimeric harmonized CPTAC3 e855020c-e8d1-4cdf-b6ea-c76be592be4c eb8e79977023ee560a8d731457d2bcad { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06070.RNA-Seq.genomic.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 5a38129a-7239-4d14-b409-76e0f3062a9f.rna_seq.genomic.gdc_realn.bam 6510103232 BAM genomic harmonized CPTAC3 07f94ba3-56e7-4258-8b07-813bf2ba8c45 6afec7b17187577c68bb839e1b1ef046 { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06070.RNA-Seq.R1_L003.Tbm C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 210319_UNC31-K00269_0296_AHKT37BBXY_ATTGTGAA-TGCATTGC_S10_L003_R1_001.fastq.gz 3218158809 FASTQ R1_L003 unaligned CPTAC3 e971ec7c-cdd4-4dc7-a1fc-4441d77fefc9 b7bf196035031901bf88e90fec032c00 { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-06070.RNA-Seq.R2_L003.Tbm C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 210319_UNC31-K00269_0296_AHKT37BBXY_ATTGTGAA-TGCATTGC_S10_L003_R2_001.fastq.gz 3422155076 FASTQ R2_L003 unaligned CPTAC3 ff2b4fc1-70a1-4d38-86a8-672a3a312966 ab10dc44806219cb7e6d648a999e0f8c { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-06070.RNA-Seq.transcriptome.Tbm.hg38 C3L-06070 AML RNA-Seq tumor_bone_marrow CPT0326150002 5a38129a-7239-4d14-b409-76e0f3062a9f.rna_seq.transcriptome.gdc_realn.bam 9383974723 BAM transcriptome harmonized CPTAC3 e9f168da-7a43-4379-a6cf-8df39e8b149b b8af96720959fe2fc274848445ae6ed0 { 'aliquot_tag': 'ALQ_ed0d6cb6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06070.WGS.Nbc C3L-06070 AML WGS buccal_normal CPT0326190002 CPT0326190002.WholeGenome.RP-2158.bam 59284431351 BAM aligned CPTAC3 77318481-475e-4851-a40d-4552f4fabe95 cdb341b276bbbbc10b6ac4d1401f2bc7 { 'aliquot_tag': 'ALQ_28fd81b7', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06070.WGS.Nbc.hg38 C3L-06070 AML WGS buccal_normal CPT0326190002 6152d143-77fc-469a-825a-cc922a7793c3_wgs_gdc_realn.bam 180241304280 BAM harmonized CPTAC3 f3180940-67d0-4bcf-8e9a-0ddb4e4936c7 1d4bc4f9ff3d501fa8117cd5111873d9 { 'aliquot_tag': 'ALQ_28fd81b7', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06070.WGS.Tbm C3L-06070 AML WGS tumor_bone_marrow CPT0326140002 CPT0326140002.WholeGenome.RP-2158.bam 58632330587 BAM aligned CPTAC3 4b2e026e-f472-49ff-89d5-c2f3d62f314f f91809af37e65042bbe1064b5fdc2fbf { 'aliquot_tag': 'ALQ_d06d4506', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06070.WGS.Tbm.hg38 C3L-06070 AML WGS tumor_bone_marrow CPT0326140002 9107763d-3224-4001-960a-ffe32c9e53eb_wgs_gdc_realn.bam 176373227224 BAM harmonized CPTAC3 c3419350-e9c5-489f-beec-f35203a5c2a4 ecf42432721e187c66d6b76f672af609 { 'aliquot_tag': 'ALQ_d06d4506', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06070.WXS.Nbc C3L-06070 AML WXS buccal_normal CPT0326190002 CPT0326190002.WholeExome.RP-1303.bam 24159633216 BAM aligned CPTAC3 f0fead0b-d30a-4d7a-9718-6f06e4a2d027 8122204e3a830ad4b612216a638e5444 { 'aliquot_tag': 'ALQ_28fd81b7', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06070.WXS.Nbc.hg38 C3L-06070 AML WXS buccal_normal CPT0326190002 6152d143-77fc-469a-825a-cc922a7793c3_wxs_gdc_realn.bam 33494030818 BAM harmonized CPTAC3 b11b88a5-4c4a-437d-8d74-99bdc25e5cfa 3e5e360d876666db56aca20e57e2dbb8 { 'aliquot_tag': 'ALQ_28fd81b7', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06070.WXS.Tbm C3L-06070 AML WXS tumor_bone_marrow CPT0326140002 CPT0326140002.WholeExome.RP-1303.bam 19926201297 BAM aligned CPTAC3 f5470787-646e-412f-84d8-03c775e68630 f6783bd386e15cf0defe38d421c00423 { 'aliquot_tag': 'ALQ_d06d4506', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06070.WXS.Tbm.hg38 C3L-06070 AML WXS tumor_bone_marrow CPT0326140002 9107763d-3224-4001-960a-ffe32c9e53eb_wxs_gdc_realn.bam 27486888087 BAM harmonized CPTAC3 b7b34294-8591-486f-98ed-da7a388edb83 41ba9b39ed0cdbc6b1ce56dd1c22b847 { 'aliquot_tag': 'ALQ_d06d4506', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06072.MethArray.Green.Tpb C3L-06072 AML Methylation Array tumor_peripheral_blood CPT0369720002 205987780094_R05C01_Grn.idat 13677900 IDAT Green NA CPTAC3 45add882-c9de-4103-aad4-b0d833abaab2 8acfea16d765bc9e0d0b565caca9eca3 { 'aliquot_tag': 'ALQ_fb762da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06072.MethArray.Red.Tpb C3L-06072 AML Methylation Array tumor_peripheral_blood CPT0369720002 205987780094_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 4e3b3f20-b307-4c1a-97d3-29bc30b531f4 6e6d809104eea93edbac3a5118e1da76 { 'aliquot_tag': 'ALQ_fb762da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06072.miRNA-Seq.Tpb C3L-06072 AML miRNA-Seq tumor_peripheral_blood CPT0369760002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATTCCT_S44_L003_R1_001.unaln.bam 230490283 BAM unaligned CPTAC3 7f452937-e23d-469e-b23b-691129d3eee2 8b7a1a075ab33d8ee775336f692283b7 { 'aliquot_tag': 'ALQ_ef68b68', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06072.RNA-Seq.R1_L006.Tpb C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATGGCATG-AAGGTACC_S22_L006_R1_001.fastq.gz 3545686367 FASTQ R1_L006 unaligned CPTAC3 82b7f51d-b538-4767-ae05-11d9894594c6 ea053998f8a0b265cf3cb12fb049c6c1 { 'aliquot_tag': 'ALQ_ef68b68', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06072.RNA-Seq.R2_L006.Tpb C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATGGCATG-AAGGTACC_S22_L006_R2_001.fastq.gz 3805050664 FASTQ R2_L006 unaligned CPTAC3 e54968f4-2495-4405-970e-709db0d36a14 c49af4598946a796365dd05375471f7b { 'aliquot_tag': 'ALQ_ef68b68', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06072.miRNA-Seq.Tpb.hg38 C3L-06072 AML miRNA-Seq tumor_peripheral_blood CPT0369760002 1b5999d5-1657-49f5-9e1e-6f63b3b2f985_mirnaseq_gdc_realn.bam 257242713 BAM harmonized CPTAC3 d58a4c3d-6b12-4fd1-843c-1e54dd4fb114 f7b6673b942a2752ed1250a67de24314 { 'aliquot_tag': 'ALQ_ef68b68', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06072.RNA-Seq.chimeric.Tpb.hg38 C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 6d44d0fd-536d-422a-b342-e49e9a2ac74b.rna_seq.chimeric.gdc_realn.bam 689476770 BAM chimeric harmonized CPTAC3 a8188303-df13-4a4f-8bc8-1ee3084be6d7 d85d34c65de18f0f814a6261e6a5982a { 'aliquot_tag': 'ALQ_ef68b68', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06072.RNA-Seq.genomic.Tpb.hg38 C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 6d44d0fd-536d-422a-b342-e49e9a2ac74b.rna_seq.genomic.gdc_realn.bam 7069676273 BAM genomic harmonized CPTAC3 40219852-bc64-4e7a-a575-13ec182a8d4b cef290d26af6de33ac9ec8ec8ff0b048 { 'aliquot_tag': 'ALQ_ef68b68', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06072.RNA-Seq.R1_L006.Tpb C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATGGCATG-AAGGTACC_S22_L006_R1_001.fastq.gz 3545686367 FASTQ R1_L006 unaligned CPTAC3 82b7f51d-b538-4767-ae05-11d9894594c6 ea053998f8a0b265cf3cb12fb049c6c1 { 'aliquot_tag': 'ALQ_ef68b68', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L006' } +C3L-06072.RNA-Seq.R2_L006.Tpb C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATGGCATG-AAGGTACC_S22_L006_R2_001.fastq.gz 3805050664 FASTQ R2_L006 unaligned CPTAC3 e54968f4-2495-4405-970e-709db0d36a14 c49af4598946a796365dd05375471f7b { 'aliquot_tag': 'ALQ_ef68b68', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L006' } +C3L-06072.RNA-Seq.transcriptome.Tpb.hg38 C3L-06072 AML RNA-Seq tumor_peripheral_blood CPT0369760002 6d44d0fd-536d-422a-b342-e49e9a2ac74b.rna_seq.transcriptome.gdc_realn.bam 7349539022 BAM transcriptome harmonized CPTAC3 e70d33dc-1c28-4982-a883-f65ceb383e7f b0e03f140e140cd3abba84f682eb70d2 { 'aliquot_tag': 'ALQ_ef68b68', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06072.WGS.Nbc C3L-06072 AML WGS buccal_normal CPT0369690002 CPT0369690002.WholeGenome.RP-2158.bam 48083145421 BAM aligned CPTAC3 02b0ac20-961f-4935-9e53-42175deef4a8 501a0de9f6dcfc06628dca2a58e3acbd { 'aliquot_tag': 'ALQ_47facf1c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06072.WGS.Nbc.hg38 C3L-06072 AML WGS buccal_normal CPT0369690002 1adf12e4-ba45-415f-865f-d7974cd71439_wgs_gdc_realn.bam 148315312881 BAM harmonized CPTAC3 343a85c3-aea3-4ca6-88e8-dadeff887a4f 0281d8b03ea5e45526ea40f70f72e4d9 { 'aliquot_tag': 'ALQ_47facf1c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06072.WGS.Tpb C3L-06072 AML WGS tumor_peripheral_blood CPT0369720002 CPT0369720002.WholeGenome.RP-2158.bam 44094742886 BAM aligned CPTAC3 12d512ce-c923-41e7-8fdb-d5865160784a a5de1a0a65d273e58de4b42c94b6d036 { 'aliquot_tag': 'ALQ_fb762da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06072.WGS.Tpb.hg38 C3L-06072 AML WGS tumor_peripheral_blood CPT0369720002 119c6980-fe9b-4e85-bd5c-2a201aa6eba7_wgs_gdc_realn.bam 127936543010 BAM harmonized CPTAC3 d89ac0df-eada-4938-9b40-4ff3515eacdb 7e8f9e6305902612127349a429a969b4 { 'aliquot_tag': 'ALQ_fb762da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06072.WXS.Nbc C3L-06072 AML WXS buccal_normal CPT0369690002 CPT0369690002.WholeExome.RP-1303.bam 17868360061 BAM aligned CPTAC3 c345bc99-53dc-4348-8e44-f439c2e8662c 9dbfd85bbbf4f2aab175604d66791b13 { 'aliquot_tag': 'ALQ_47facf1c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06072.WXS.Nbc.hg38 C3L-06072 AML WXS buccal_normal CPT0369690002 1adf12e4-ba45-415f-865f-d7974cd71439_wxs_gdc_realn.bam 24287119355 BAM harmonized CPTAC3 dedd32c0-3e63-45e0-ad49-7f74153a9cf4 f3f03030800d7f8f69277905136b9a3a { 'aliquot_tag': 'ALQ_47facf1c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06072.WXS.Tpb C3L-06072 AML WXS tumor_peripheral_blood CPT0369720002 CPT0369720002.WholeExome.RP-1303.bam 28161962560 BAM aligned CPTAC3 7e180b43-4504-4b6b-be9b-ff2cd0161603 bbcf589d13f4009e52ca64b18bf83e19 { 'aliquot_tag': 'ALQ_fb762da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06072.WXS.Tpb.hg38 C3L-06072 AML WXS tumor_peripheral_blood CPT0369720002 119c6980-fe9b-4e85-bd5c-2a201aa6eba7_wxs_gdc_realn.bam 39063588272 BAM harmonized CPTAC3 8d6dce3c-9f69-461b-83c8-2b752452b7e9 0c43bddcf6024ced980d4ee53fea26b5 { 'aliquot_tag': 'ALQ_fb762da8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06073.MethArray.Green.Tbm C3L-06073 AML Methylation Array tumor_bone_marrow CPT0370690002 205589730156_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 0c9edc91-6d3a-4345-9179-1d85b4c11a2b ac6ef59bea60a1cdf24ac275434b108b { 'aliquot_tag': 'ALQ_1ec88a51', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06073.MethArray.Red.Tbm C3L-06073 AML Methylation Array tumor_bone_marrow CPT0370690002 205589730156_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 f007e836-4264-4498-85c2-8b708b9534d7 701b79ffd139bce224b44c36a74db019 { 'aliquot_tag': 'ALQ_1ec88a51', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06073.miRNA-Seq.Tbm C3L-06073 AML miRNA-Seq tumor_bone_marrow CPT0370670002 210331_UNC31-K00269_0297_AHKCFKBBXY_ATGTCA_S19_L007_R1_001.unaln.bam 303050518 BAM unaligned CPTAC3 b1fbfb30-9556-4f6e-86d9-ea0d536f00ce 314af9b49d4c443ab11015d73b1da4ac { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06073.miRNA-Seq.Tbm.hg38 C3L-06073 AML miRNA-Seq tumor_bone_marrow CPT0370670002 5b95bda9-07f4-4185-985f-3a8ad47e52f9_mirnaseq_gdc_realn.bam 317823474 BAM harmonized CPTAC3 aac09fe7-5154-4c95-ad04-ffc53a178015 4adab3cff5126ec17dbf21363ef973ff { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06073.RNA-Seq.chimeric.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.chimeric.gdc_realn.bam 149127548 BAM chimeric harmonized CPTAC3 c749539e-424b-4030-8452-6193d375a849 3aaa899061e7ee49c9336ff3648d3178 { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06073.RNA-Seq.genomic.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.genomic.gdc_realn.bam 8159541327 BAM genomic harmonized CPTAC3 f11a67e1-e715-410e-a810-0a2136c1bc75 0d1d9720b01c8562482a4c37c09fa3dc { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06073.RNA-Seq.R1_L007.Tbm C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGCTTAAG-TCGTGACC_S59_L007_R1_001.fastq.gz 3936008383 FASTQ R1_L007 unaligned CPTAC3 2a9f2071-6f43-42f7-8e78-249b76c494bb 0013d998a32202e736c8285e569a3bb8 { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06073.RNA-Seq.R2_L007.Tbm C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGCTTAAG-TCGTGACC_S59_L007_R2_001.fastq.gz 4254043495 FASTQ R2_L007 unaligned CPTAC3 f74e6b9e-cdcf-4669-bf48-e344ed3459c6 eae15dc5faf02596f3f9ab6c70261b6b { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06073.RNA-Seq.transcriptome.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.transcriptome.gdc_realn.bam 10506542454 BAM transcriptome harmonized CPTAC3 71fe15b7-5d40-484e-ad46-081a215a8319 02243b7187ce562d4d1ddce5fe6fc979 { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06073.RNA-Seq.chimeric.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.chimeric.gdc_realn.bam 149127548 BAM chimeric harmonized CPTAC3 8ded26a0-2057-47f9-ad11-27781abcc042 3aaa899061e7ee49c9336ff3648d3178 { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06073.RNA-Seq.genomic.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.genomic.gdc_realn.bam 8159541327 BAM genomic harmonized CPTAC3 0e006dbd-8126-4768-ae4f-68e477a864ff 0d1d9720b01c8562482a4c37c09fa3dc { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06073.RNA-Seq.R1_L007.Tbm C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGCTTAAG-TCGTGACC_S59_L007_R1_001.fastq.gz 3936008383 FASTQ R1_L007 unaligned CPTAC3 2a9f2071-6f43-42f7-8e78-249b76c494bb 0013d998a32202e736c8285e569a3bb8 { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-06073.RNA-Seq.R2_L007.Tbm C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGCTTAAG-TCGTGACC_S59_L007_R2_001.fastq.gz 4254043495 FASTQ R2_L007 unaligned CPTAC3 f74e6b9e-cdcf-4669-bf48-e344ed3459c6 eae15dc5faf02596f3f9ab6c70261b6b { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-06073.RNA-Seq.transcriptome.Tbm.hg38 C3L-06073 AML RNA-Seq tumor_bone_marrow CPT0370670002 83242d67-cf46-4ac8-9332-3473f7b40e54.rna_seq.transcriptome.gdc_realn.bam 10506542454 BAM transcriptome harmonized CPTAC3 9a0cd4dc-8f8a-476e-841b-66318862ca14 02243b7187ce562d4d1ddce5fe6fc979 { 'aliquot_tag': 'ALQ_a1f83430', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06073.WGS.Tbm C3L-06073 AML WGS tumor_bone_marrow CPT0370690002 CPT0370690002.WholeGenome.RP-2158.bam 46725454089 BAM aligned CPTAC3 5aee57d2-538f-436f-8298-7c0dc829503a 0b5dc54f6c2a716f8e3c160f04f297d1 { 'aliquot_tag': 'ALQ_1ec88a51', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06073.WGS.Tbm.hg38 C3L-06073 AML WGS tumor_bone_marrow CPT0370690002 f84701f0-bcab-4379-a4f2-8bfa19021e41_wgs_gdc_realn.bam 131703064864 BAM harmonized CPTAC3 c964a957-b63d-4618-86bd-2a8e90f71c0e 7b126d6b6080b94e1299e5acd39bec8b { 'aliquot_tag': 'ALQ_1ec88a51', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06073.WXS.Tbm C3L-06073 AML WXS tumor_bone_marrow CPT0370690002 CPT0370690002.WholeExome.RP-1303.bam 26251193354 BAM aligned CPTAC3 7d0adb08-2199-4486-a573-8d796ca62454 b18f1061a0fdfe93da1615726229091e { 'aliquot_tag': 'ALQ_1ec88a51', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06073.WXS.Tbm.hg38 C3L-06073 AML WXS tumor_bone_marrow CPT0370690002 f84701f0-bcab-4379-a4f2-8bfa19021e41_wxs_gdc_realn.bam 36475108386 BAM harmonized CPTAC3 0997eeba-f60e-4798-a07d-eac375e57f22 596303d71def176602cb9b4691a6ab8c { 'aliquot_tag': 'ALQ_1ec88a51', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06074.MethArray.Green.Tpb C3L-06074 AML Methylation Array tumor_peripheral_blood CPT0371170002 205987780161_R08C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ac74f9e7-f536-4592-b32d-26873823a5ec 235c1890f34c638607441953af495cb8 { 'aliquot_tag': 'ALQ_1a8a0f3c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06074.MethArray.Red.Tpb C3L-06074 AML Methylation Array tumor_peripheral_blood CPT0371170002 205987780161_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 7e647122-2a7f-4a9f-9f35-1a930bbb9f9e 3adbe788bd135485270cb2b9abaa5ea6 { 'aliquot_tag': 'ALQ_1a8a0f3c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06074.miRNA-Seq.Tpb C3L-06074 AML miRNA-Seq tumor_peripheral_blood CPT0371180002 220125_UNC32-K00270_0311_AHMNYYBBXY_AGTTCC_S26_L002_R1_001.unaln.bam 263702724 BAM unaligned CPTAC3 1f8d8125-4187-42f7-b0fc-554cae6a7f5c 61de3e81bf892e5d8ffefe03df209b60 { 'aliquot_tag': 'ALQ_98da98ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06074.RNA-Seq.R1_L002.Tpb C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 211207_UNC32-K00270_0306_BHMW5YBBXY_AATGCCTC-TCGATCCA_S5_L002_R1_001.fastq.gz 4499840671 FASTQ R1_L002 unaligned CPTAC3 50dd645d-18fe-47a6-9c84-3ab2cc4920cf 3a78a779f7ae6b75cd723ac1d0fd9dd8 { 'aliquot_tag': 'ALQ_98da98ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06074.RNA-Seq.R2_L002.Tpb C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 211207_UNC32-K00270_0306_BHMW5YBBXY_AATGCCTC-TCGATCCA_S5_L002_R2_001.fastq.gz 4669385308 FASTQ R2_L002 unaligned CPTAC3 1454570b-74ec-4b94-8d48-7c72d5f8470b 402d46096c60a1e8bbcbb6425fd5c1ff { 'aliquot_tag': 'ALQ_98da98ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06074.miRNA-Seq.Tpb.hg38 C3L-06074 AML miRNA-Seq tumor_peripheral_blood CPT0371180002 38d40788-7809-490e-ad9f-fd87b2851b08_mirnaseq_gdc_realn.bam 284493058 BAM harmonized CPTAC3 fc6ef094-8f18-4ddc-8ac7-b63a8dd1c74c fc374afe91984484a17aeb8fc0d10df7 { 'aliquot_tag': 'ALQ_98da98ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06074.RNA-Seq.chimeric.Tpb.hg38 C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 a8d6bf8d-0acd-4afe-be97-2b7422f58b71.rna_seq.chimeric.gdc_realn.bam 587695400 BAM chimeric harmonized CPTAC3 d405560d-5d67-4133-b083-5d9b2aed759e 94fd597083f25a7675540297512ae470 { 'aliquot_tag': 'ALQ_98da98ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06074.RNA-Seq.genomic.Tpb.hg38 C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 a8d6bf8d-0acd-4afe-be97-2b7422f58b71.rna_seq.genomic.gdc_realn.bam 8801923084 BAM genomic harmonized CPTAC3 d51c77a9-8d6a-4849-baf0-09440f07ef5a 565c5fa8f9dfc889e6872164e9140476 { 'aliquot_tag': 'ALQ_98da98ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06074.RNA-Seq.R1_L002.Tpb C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 211207_UNC32-K00270_0306_BHMW5YBBXY_AATGCCTC-TCGATCCA_S5_L002_R1_001.fastq.gz 4499840671 FASTQ R1_L002 unaligned CPTAC3 50dd645d-18fe-47a6-9c84-3ab2cc4920cf 3a78a779f7ae6b75cd723ac1d0fd9dd8 { 'aliquot_tag': 'ALQ_98da98ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L002' } +C3L-06074.RNA-Seq.R2_L002.Tpb C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 211207_UNC32-K00270_0306_BHMW5YBBXY_AATGCCTC-TCGATCCA_S5_L002_R2_001.fastq.gz 4669385308 FASTQ R2_L002 unaligned CPTAC3 1454570b-74ec-4b94-8d48-7c72d5f8470b 402d46096c60a1e8bbcbb6425fd5c1ff { 'aliquot_tag': 'ALQ_98da98ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L002' } +C3L-06074.RNA-Seq.transcriptome.Tpb.hg38 C3L-06074 AML RNA-Seq tumor_peripheral_blood CPT0371180002 a8d6bf8d-0acd-4afe-be97-2b7422f58b71.rna_seq.transcriptome.gdc_realn.bam 9653949922 BAM transcriptome harmonized CPTAC3 674f108b-4f64-453b-bfc8-370fb2e09dca c37c7cf3579b7bfc28ded94a721f3d97 { 'aliquot_tag': 'ALQ_98da98ed', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06074.WGS.Nbc C3L-06074 AML WGS buccal_normal CPT0371120002 CPT0371120002.WholeGenome.RP-2158.bam 59291864171 BAM aligned CPTAC3 3ee87649-29cb-42bc-b8c4-0aab8d99c6bc 1319af1b8f638017cbe239f87e646228 { 'aliquot_tag': 'ALQ_d26a804c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06074.WGS.Nbc.hg38 C3L-06074 AML WGS buccal_normal CPT0371120002 af33e386-18b7-4f20-85f9-5bb0131d9b0a_wgs_gdc_realn.bam 170347703859 BAM harmonized CPTAC3 d389e536-718a-4c9c-99c7-8301baa0fd09 020ea8f392e16d92ec11057b695ca72e { 'aliquot_tag': 'ALQ_d26a804c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06074.WGS.Tpb C3L-06074 AML WGS tumor_peripheral_blood CPT0371170002 CPT0371170002.WholeGenome.RP-2158.bam 43977145645 BAM aligned CPTAC3 ffcf686b-8751-4a02-9fe5-d37458f77737 66440d256c7811e162e2823d2bbe426d { 'aliquot_tag': 'ALQ_1a8a0f3c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06074.WGS.Tpb.hg38 C3L-06074 AML WGS tumor_peripheral_blood CPT0371170002 317ae442-efba-4243-814a-09cad953f602_wgs_gdc_realn.bam 367154639935 BAM harmonized CPTAC3 6b02e7e1-703f-44b0-8aa8-f1c52e7788a6 c4f342428b574a110f10c6aacb171dc1 { 'aliquot_tag': 'ALQ_1a8a0f3c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06074.WXS.Nbc C3L-06074 AML WXS buccal_normal CPT0371120002 CPT0371120002.WholeExome.RP-1303.bam 25858271266 BAM aligned CPTAC3 3c40f5be-c066-458c-96e7-5dcd1201c1d4 c7c9e73e6122cd1bbb500be2bfe84d3b { 'aliquot_tag': 'ALQ_d26a804c', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06074.WXS.Nbc.hg38 C3L-06074 AML WXS buccal_normal CPT0371120002 af33e386-18b7-4f20-85f9-5bb0131d9b0a_wxs_gdc_realn.bam 35245093334 BAM harmonized CPTAC3 1b1616ba-b1fd-4f17-9ce9-97fc0d0c1e0f c573a37f86834719a6e0e08a8ec2be9e { 'aliquot_tag': 'ALQ_d26a804c', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06074.WXS.Tpb C3L-06074 AML WXS tumor_peripheral_blood CPT0371170002 CPT0371170002.WholeExome.RP-1303.bam 26147566435 BAM aligned CPTAC3 8d0da758-9956-4da3-a535-8d1a3ad7346a 18ed7e2bfd3628c3f37b384eef339197 { 'aliquot_tag': 'ALQ_1a8a0f3c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06074.WXS.Tpb.hg38 C3L-06074 AML WXS tumor_peripheral_blood CPT0371170002 317ae442-efba-4243-814a-09cad953f602_wxs_gdc_realn.bam 36343841110 BAM harmonized CPTAC3 8447e47e-4650-46f1-a31e-4caca566ccf8 3eec4cbc4ff8022890e95959b7a69a54 { 'aliquot_tag': 'ALQ_1a8a0f3c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06075.MethArray.Green.Tbm C3L-06075 AML Methylation Array tumor_bone_marrow CPT0370450002 205707890143_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 3c1a90c2-19c4-4bbf-a8f2-a3fb997a853f 713bc541341d6670128c65bbb31ba6b6 { 'aliquot_tag': 'ALQ_96f0c65b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06075.MethArray.Red.Tbm C3L-06075 AML Methylation Array tumor_bone_marrow CPT0370450002 205707890143_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 27b90e0b-9bb4-46a6-b6de-453351fa733b b9e32a9341e38601a93653738b3eae59 { 'aliquot_tag': 'ALQ_96f0c65b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06075.miRNA-Seq.Tpb C3L-06075 AML miRNA-Seq tumor_peripheral_blood CPT0370460002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACTCA_S4_L001_R1_001.unaln.bam 297094562 BAM unaligned CPTAC3 b0ae9641-ed57-4d52-a9cd-964f75e56450 3e67466f4fcd472f86739b25c90fce1d { 'aliquot_tag': 'ALQ_d150bc8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06075.RNA-Seq.R1_L001.Tpb C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L001_R1_001.fastq.gz 4001226423 FASTQ R1_L001 unaligned CPTAC3 4d51a2e7-9fda-4770-a77b-c59c840ed0b6 be054814eed9be9d53ccf2288f3c9865 { 'aliquot_tag': 'ALQ_d150bc8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06075.RNA-Seq.R2_L001.Tpb C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L001_R2_001.fastq.gz 4288087488 FASTQ R2_L001 unaligned CPTAC3 542b3afd-7589-453f-bc59-771b68fe1c25 374390675aedfd2379aad981f0d1b400 { 'aliquot_tag': 'ALQ_d150bc8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06075.miRNA-Seq.Tpb.hg38 C3L-06075 AML miRNA-Seq tumor_peripheral_blood CPT0370460002 73fcd7e7-210d-41cf-9943-6be0ad0726b4_mirnaseq_gdc_realn.bam 322035547 BAM harmonized CPTAC3 c6c502bd-6ee4-4bd7-8f57-2e27136ba3b2 06a96fc5e4a40b3c9ce4a7c41fcace08 { 'aliquot_tag': 'ALQ_d150bc8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06075.RNA-Seq.chimeric.Tpb.hg38 C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 f314794a-51b2-4e5d-9fe5-5b1b7887cea6.rna_seq.chimeric.gdc_realn.bam 586713132 BAM chimeric harmonized CPTAC3 95a2b995-2c8a-405d-91f4-43cddc4b9ab9 132b7065a37a27591060341a45f61adf { 'aliquot_tag': 'ALQ_d150bc8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06075.RNA-Seq.genomic.Tpb.hg38 C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 f314794a-51b2-4e5d-9fe5-5b1b7887cea6.rna_seq.genomic.gdc_realn.bam 9264501711 BAM genomic harmonized CPTAC3 2e051787-6872-4fd0-ae1e-2972a73383fe 91c3401c9d9069a87b3ee190d7c2ab23 { 'aliquot_tag': 'ALQ_d150bc8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06075.RNA-Seq.R1_L001.Tpb C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L001_R1_001.fastq.gz 4001226423 FASTQ R1_L001 unaligned CPTAC3 4d51a2e7-9fda-4770-a77b-c59c840ed0b6 be054814eed9be9d53ccf2288f3c9865 { 'aliquot_tag': 'ALQ_d150bc8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L001' } +C3L-06075.RNA-Seq.R2_L001.Tpb C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L001_R2_001.fastq.gz 4288087488 FASTQ R2_L001 unaligned CPTAC3 542b3afd-7589-453f-bc59-771b68fe1c25 374390675aedfd2379aad981f0d1b400 { 'aliquot_tag': 'ALQ_d150bc8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L001' } +C3L-06075.RNA-Seq.transcriptome.Tpb.hg38 C3L-06075 AML RNA-Seq tumor_peripheral_blood CPT0370460002 f314794a-51b2-4e5d-9fe5-5b1b7887cea6.rna_seq.transcriptome.gdc_realn.bam 7491172320 BAM transcriptome harmonized CPTAC3 f69cc1a8-b9a6-477e-b66e-d2bbac34118a de89738e81bf830ea3d293b4e635a7f0 { 'aliquot_tag': 'ALQ_d150bc8b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06075.WGS.Nbc C3L-06075 AML WGS buccal_normal CPT0370400002 CPT0370400002.WholeGenome.RP-2158.bam 61394930570 BAM aligned CPTAC3 ad6cd4fb-c629-4fb0-a657-91c4034b2286 b794b06473a26143a1e86f0c21df169d { 'aliquot_tag': 'ALQ_5e10492b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06075.WGS.Nbc.hg38 C3L-06075 AML WGS buccal_normal CPT0370400002 7ff77494-ebab-43b5-b756-6acd97a90b78_wgs_gdc_realn.bam 203620540701 BAM harmonized CPTAC3 47e8d381-d52d-4117-b450-ab265a010af9 f8b06f18f00a5c85b8782398735a8150 { 'aliquot_tag': 'ALQ_5e10492b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06075.WGS.Tbm C3L-06075 AML WGS tumor_bone_marrow CPT0370450002 CPT0370450002.WholeGenome.RP-2158.bam 56099819021 BAM aligned CPTAC3 7d9db5a1-c0db-43d7-96e6-03bbcf6d7837 9527d63392254fbce214020302a1af6e { 'aliquot_tag': 'ALQ_96f0c65b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06075.WGS.Tbm.hg38 C3L-06075 AML WGS tumor_bone_marrow CPT0370450002 3240c8c5-7f8a-4e95-b5c2-f8fd067986af_wgs_gdc_realn.bam 166584458143 BAM harmonized CPTAC3 17f35cdd-9827-40b2-9f27-f7ff88dbfed0 2fe0a7af7e50cae2f1b340c123f3a867 { 'aliquot_tag': 'ALQ_96f0c65b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06075.WXS.Nbc C3L-06075 AML WXS buccal_normal CPT0370400002 CPT0370400002.WholeExome.RP-1303.bam 29404791979 BAM aligned CPTAC3 ff2a36cf-25f1-4f2b-9fcc-25e3bd686e20 a8fcbc2b58a7def5267e4216df275da6 { 'aliquot_tag': 'ALQ_5e10492b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06075.WXS.Nbc.hg38 C3L-06075 AML WXS buccal_normal CPT0370400002 7ff77494-ebab-43b5-b756-6acd97a90b78_wxs_gdc_realn.bam 40422279314 BAM harmonized CPTAC3 6ce214e7-d2a0-407a-9207-88a0bd2e49a6 e92b69a7d2482e7533d750d77b0bc18b { 'aliquot_tag': 'ALQ_5e10492b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06075.WXS.Tbm C3L-06075 AML WXS tumor_bone_marrow CPT0370450002 CPT0370450002.WholeExome.RP-1303.bam 27567774244 BAM aligned CPTAC3 612671e0-5738-4fe1-a287-41748647821f 4c068d07f0a9b2c4279969519b005055 { 'aliquot_tag': 'ALQ_96f0c65b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06075.WXS.Tbm.hg38 C3L-06075 AML WXS tumor_bone_marrow CPT0370450002 3240c8c5-7f8a-4e95-b5c2-f8fd067986af_wxs_gdc_realn.bam 38474016924 BAM harmonized CPTAC3 72f599d1-d66b-4db4-bbd6-3cc94517884f 4cdeba3b8a2bd967b9a9fca5293b9f49 { 'aliquot_tag': 'ALQ_96f0c65b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06081.MethArray.Green.Tbm C3L-06081 AML Methylation Array tumor_bone_marrow CPT0452610002 205987780161_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 a445e029-6ce7-46b5-9f00-a7ed9dcdc441 7410ffbfb43892bfaf766675b6ca0954 { 'aliquot_tag': 'ALQ_9f63ba0d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06081.MethArray.Red.Tbm C3L-06081 AML Methylation Array tumor_bone_marrow CPT0452610002 205987780161_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 33840893-ed3b-400f-af99-e9426706ab6a 1ddd54f17a286aabc8f50e654c685b27 { 'aliquot_tag': 'ALQ_9f63ba0d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06081.miRNA-Seq.Tbm C3L-06081 AML miRNA-Seq tumor_bone_marrow CPT0452620002 220125_UNC32-K00270_0311_AHMNYYBBXY_TCGAAG_S20_L003_R1_001.unaln.bam 184198755 BAM unaligned CPTAC3 5ce1b12c-d601-4a66-95ac-d93757290b03 c46a1cdf50baae1647d90c43dcf0c25c { 'aliquot_tag': 'ALQ_d8c3c0dd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06081.RNA-Seq.R1_L002.Tbm C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 220126_UNC32-K00270_0314_AHMVJ7BBXY_ACACTAAG-ATCCATAT_S5_L002_R1_001.fastq.gz 4524484967 FASTQ R1_L002 unaligned CPTAC3 27d6ab0a-cbb7-40b9-af9e-a3e7a407b8a7 93468f10f4b484a5d0d6845a939fce8e { 'aliquot_tag': 'ALQ_d8c3c0dd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06081.RNA-Seq.R2_L002.Tbm C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 220126_UNC32-K00270_0314_AHMVJ7BBXY_ACACTAAG-ATCCATAT_S5_L002_R2_001.fastq.gz 5017312104 FASTQ R2_L002 unaligned CPTAC3 8f431e06-a2ed-411c-834b-ac6573ec6994 59788e71abe1bdbf316d637c191492e5 { 'aliquot_tag': 'ALQ_d8c3c0dd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06081.miRNA-Seq.Tbm.hg38 C3L-06081 AML miRNA-Seq tumor_bone_marrow CPT0452620002 19b823fa-2808-4437-ba58-fd7062f10da8_mirnaseq_gdc_realn.bam 210900142 BAM harmonized CPTAC3 46965013-7c4d-46b7-8e17-73c4dfb634f3 78b57e931555520938a1d42cfa7d9195 { 'aliquot_tag': 'ALQ_d8c3c0dd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06081.RNA-Seq.chimeric.Tbm.hg38 C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 1cd13bd7-b70d-41af-b3ff-20e02a0f32bb.rna_seq.chimeric.gdc_realn.bam 430690606 BAM chimeric harmonized CPTAC3 5c8d1922-1a0f-475e-9af0-89f50d382864 4fbc44ac43dffde6393fa55befbc74c1 { 'aliquot_tag': 'ALQ_d8c3c0dd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06081.RNA-Seq.genomic.Tbm.hg38 C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 1cd13bd7-b70d-41af-b3ff-20e02a0f32bb.rna_seq.genomic.gdc_realn.bam 9169586737 BAM genomic harmonized CPTAC3 3d5e524a-6724-4aec-99d6-6f86cb1801ae 7be4881f3ec89aa8a2a3c06b9dd4b104 { 'aliquot_tag': 'ALQ_d8c3c0dd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06081.RNA-Seq.R1_L002.Tbm C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 220126_UNC32-K00270_0314_AHMVJ7BBXY_ACACTAAG-ATCCATAT_S5_L002_R1_001.fastq.gz 4524484967 FASTQ R1_L002 unaligned CPTAC3 27d6ab0a-cbb7-40b9-af9e-a3e7a407b8a7 93468f10f4b484a5d0d6845a939fce8e { 'aliquot_tag': 'ALQ_d8c3c0dd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-06081.RNA-Seq.R2_L002.Tbm C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 220126_UNC32-K00270_0314_AHMVJ7BBXY_ACACTAAG-ATCCATAT_S5_L002_R2_001.fastq.gz 5017312104 FASTQ R2_L002 unaligned CPTAC3 8f431e06-a2ed-411c-834b-ac6573ec6994 59788e71abe1bdbf316d637c191492e5 { 'aliquot_tag': 'ALQ_d8c3c0dd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-06081.RNA-Seq.transcriptome.Tbm.hg38 C3L-06081 AML RNA-Seq tumor_bone_marrow CPT0452620002 1cd13bd7-b70d-41af-b3ff-20e02a0f32bb.rna_seq.transcriptome.gdc_realn.bam 10236591159 BAM transcriptome harmonized CPTAC3 b12ea9f1-e1e8-4393-9c8c-0073745a8d53 de92789e9f140e3373e342d0768bfe42 { 'aliquot_tag': 'ALQ_d8c3c0dd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06081.WGS.Nbc C3L-06081 AML WGS buccal_normal CPT0452580002 CPT0452580002.WholeGenome.RP-2158.bam 40855679386 BAM aligned CPTAC3 e9f5e03e-f8e3-464b-81a8-bb6e9f88f101 f59059b8b17803c6ec1525deea9a4bc6 { 'aliquot_tag': 'ALQ_14e7aad2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06081.WGS.Nbc.hg38 C3L-06081 AML WGS buccal_normal CPT0452580002 514223c1-3f15-441e-b150-c3ac379276de_wgs_gdc_realn.bam 135193769846 BAM harmonized CPTAC3 c1b6ce2c-5f95-4401-aacf-ba91ba168ea4 beb10e17a44a0cd92a28e72ae78b0a31 { 'aliquot_tag': 'ALQ_14e7aad2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06081.WGS.Tbm C3L-06081 AML WGS tumor_bone_marrow CPT0452610002 CPT0452610002.WholeGenome.RP-2158.bam 57212987809 BAM aligned CPTAC3 7d8be4b7-e3e2-4bd2-8d7c-a98b9c008459 65e1a32d11b73b62236cbda79f548314 { 'aliquot_tag': 'ALQ_9f63ba0d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06081.WGS.Tbm.hg38 C3L-06081 AML WGS tumor_bone_marrow CPT0452610002 f5223369-0629-49fe-8d6c-168633407e79_wgs_gdc_realn.bam 172146341176 BAM harmonized CPTAC3 8a5d9822-2aac-41de-a04c-3bfcc975bd20 3e1a568d56ee314d9bc9974310fcce89 { 'aliquot_tag': 'ALQ_9f63ba0d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06081.WXS.Nbc C3L-06081 AML WXS buccal_normal CPT0452580002 CPT0452580002.WholeExome.RP-1303.bam 28932454464 BAM aligned CPTAC3 387b4650-d0a7-4ede-a82f-1f43efc58048 5142c1257260f8b8b3fc6e0980d99040 { 'aliquot_tag': 'ALQ_14e7aad2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06081.WXS.Nbc.hg38 C3L-06081 AML WXS buccal_normal CPT0452580002 514223c1-3f15-441e-b150-c3ac379276de_wxs_gdc_realn.bam 40169047067 BAM harmonized CPTAC3 73f5f03d-516a-46ca-afad-3e1cc385cf4d 34d171051f1ca40d91b0a489d9d6b5ec { 'aliquot_tag': 'ALQ_14e7aad2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06081.WXS.Tbm C3L-06081 AML WXS tumor_bone_marrow CPT0452610002 CPT0452610002.WholeExome.RP-1303.bam 28667945964 BAM aligned CPTAC3 0a3c2aaa-b04d-49d1-8f65-77c0e96be3e1 a1278e8d358b3409cdd9b018e6295304 { 'aliquot_tag': 'ALQ_9f63ba0d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06081.WXS.Tbm.hg38 C3L-06081 AML WXS tumor_bone_marrow CPT0452610002 f5223369-0629-49fe-8d6c-168633407e79_wxs_gdc_realn.bam 39570188846 BAM harmonized CPTAC3 3b620621-8e5f-4c2b-a1bf-700aab00eba9 93b7307fd83c08792d33c84c865c166c { 'aliquot_tag': 'ALQ_9f63ba0d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06082.MethArray.Green.Tbm C3L-06082 AML Methylation Array tumor_bone_marrow CPT0369940002 205707890036_R08C01_Grn.idat 13677894 IDAT Green NA CPTAC3 b82bcfb5-3345-4510-b91d-d34bba6660b6 76774446993371f9ad8f3b93510b9ddb { 'aliquot_tag': 'ALQ_4e3cb978', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06082.MethArray.Red.Tbm C3L-06082 AML Methylation Array tumor_bone_marrow CPT0369940002 205707890036_R08C01_Red.idat 13677894 IDAT Red NA CPTAC3 9f69da76-7242-4baf-a539-6ef10b0282fd efb482350258cfff3ce9a6d778f37f88 { 'aliquot_tag': 'ALQ_4e3cb978', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06082.miRNA-Seq.Tpb C3L-06082 AML miRNA-Seq tumor_peripheral_blood CPT0369980002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAACTA_S28_L003_R1_001.unaln.bam 221096532 BAM unaligned CPTAC3 86afc279-e464-42cf-8af0-e07015cd55e4 13a7e01b09b010d5801cb343a88e4c58 { 'aliquot_tag': 'ALQ_8bcc5479', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06082.RNA-Seq.R1_L006.Tpb C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTTCCAAT-AATTCTGC_S24_L006_R1_001.fastq.gz 4151955597 FASTQ R1_L006 unaligned CPTAC3 5de83077-6e32-4796-90d6-7742845fbd32 e1d19f47152a2e3888dce9eeda2e7618 { 'aliquot_tag': 'ALQ_8bcc5479', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06082.RNA-Seq.R2_L006.Tpb C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTTCCAAT-AATTCTGC_S24_L006_R2_001.fastq.gz 4441579884 FASTQ R2_L006 unaligned CPTAC3 3ed174f8-22b4-4d16-a3f7-82447ac3d34a 0c7bf216f683ac883fdf4e09d4e01cbc { 'aliquot_tag': 'ALQ_8bcc5479', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06082.miRNA-Seq.Tpb.hg38 C3L-06082 AML miRNA-Seq tumor_peripheral_blood CPT0369980002 1d6aa9ec-fe58-41cc-8803-0452e10cf859_mirnaseq_gdc_realn.bam 245476341 BAM harmonized CPTAC3 3edfc932-3030-447f-9b94-252241f3760c 19e38b90a95d7678e64085c05d44ee92 { 'aliquot_tag': 'ALQ_8bcc5479', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06082.RNA-Seq.chimeric.Tpb.hg38 C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 fcc48e14-1f05-4c46-8cec-6c35e85988e4.rna_seq.chimeric.gdc_realn.bam 690357928 BAM chimeric harmonized CPTAC3 4760c21d-d6b7-4629-a4bf-8cd37e7053e5 77cff9a48af9756e08043858350d1e5a { 'aliquot_tag': 'ALQ_8bcc5479', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06082.RNA-Seq.genomic.Tpb.hg38 C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 fcc48e14-1f05-4c46-8cec-6c35e85988e4.rna_seq.genomic.gdc_realn.bam 8207921033 BAM genomic harmonized CPTAC3 27b69363-710f-457d-ac2e-195f49983ffb 1f3f728e121794f82742451633dd4ab9 { 'aliquot_tag': 'ALQ_8bcc5479', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06082.RNA-Seq.R1_L006.Tpb C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTTCCAAT-AATTCTGC_S24_L006_R1_001.fastq.gz 4151955597 FASTQ R1_L006 unaligned CPTAC3 5de83077-6e32-4796-90d6-7742845fbd32 e1d19f47152a2e3888dce9eeda2e7618 { 'aliquot_tag': 'ALQ_8bcc5479', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L006' } +C3L-06082.RNA-Seq.R2_L006.Tpb C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GTTCCAAT-AATTCTGC_S24_L006_R2_001.fastq.gz 4441579884 FASTQ R2_L006 unaligned CPTAC3 3ed174f8-22b4-4d16-a3f7-82447ac3d34a 0c7bf216f683ac883fdf4e09d4e01cbc { 'aliquot_tag': 'ALQ_8bcc5479', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L006' } +C3L-06082.RNA-Seq.transcriptome.Tpb.hg38 C3L-06082 AML RNA-Seq tumor_peripheral_blood CPT0369980002 fcc48e14-1f05-4c46-8cec-6c35e85988e4.rna_seq.transcriptome.gdc_realn.bam 8841829918 BAM transcriptome harmonized CPTAC3 17a78e32-a204-44e8-83fa-cbbc47490d9d 1f04e003673da3c777e1957bd5700d8b { 'aliquot_tag': 'ALQ_8bcc5479', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06082.WGS.Tbm C3L-06082 AML WGS tumor_bone_marrow CPT0369940002 CPT0369940002.WholeGenome.RP-2158.bam 50309371790 BAM aligned CPTAC3 99a1ada9-9d09-4a04-8fec-da11a4c3849a 75ac7c3f88027874546acf76b1f2ab8c { 'aliquot_tag': 'ALQ_4e3cb978', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06082.WGS.Tbm.hg38 C3L-06082 AML WGS tumor_bone_marrow CPT0369940002 76ef3c77-d9e5-4081-afdf-5079589663c7_wgs_gdc_realn.bam 144827805041 BAM harmonized CPTAC3 0bda7b7d-df27-48de-a0fc-755399dea180 7c8476db0bd85cfbe3cd551da7d658c4 { 'aliquot_tag': 'ALQ_4e3cb978', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06082.WXS.Nbc C3L-06082 AML WXS buccal_normal CPT0369910002 CPT0369910002.WholeExome.RP-1303.bam 25926319973 BAM aligned CPTAC3 0cb730aa-7ef5-4b7e-9200-312da0320bfb 97583fc7a9dad0dbfcce9203ee77b89e { 'aliquot_tag': 'ALQ_86dc3608', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06082.WXS.Nbc.hg38 C3L-06082 AML WXS buccal_normal CPT0369910002 f6184d62-7c6f-49a7-a375-574fcd8faa62_wxs_gdc_realn.bam 35355218737 BAM harmonized CPTAC3 ed1760b8-da9b-4a5a-9433-9d010236f046 d08836f5581135bd5e1fb7f3e1f18fd2 { 'aliquot_tag': 'ALQ_86dc3608', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06082.WXS.Tbm C3L-06082 AML WXS tumor_bone_marrow CPT0369940002 CPT0369940002.WholeExome.RP-1303.bam 28208513663 BAM aligned CPTAC3 61c462e2-d093-42b3-aa1c-32fd72730c72 bff3e437dac6e99ede4f0c9d0f7c2084 { 'aliquot_tag': 'ALQ_4e3cb978', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06082.WXS.Tbm.hg38 C3L-06082 AML WXS tumor_bone_marrow CPT0369940002 76ef3c77-d9e5-4081-afdf-5079589663c7_wxs_gdc_realn.bam 39154540027 BAM harmonized CPTAC3 69e375cb-f7a4-48b3-b428-ae1b3b6bd512 6a89c49c62824211b04e51514328a09d { 'aliquot_tag': 'ALQ_4e3cb978', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06087.MethArray.Green.Tpb C3L-06087 AML Methylation Array tumor_peripheral_blood CPT0356660002 205987770157_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 b8b9dda3-3b0c-4437-bd91-acb7b173a9e0 4cb08665238fb4dcbf4d4f15971882b4 { 'aliquot_tag': 'ALQ_bd6d2fc7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06087.MethArray.Red.Tpb C3L-06087 AML Methylation Array tumor_peripheral_blood CPT0356660002 205987770157_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 73c7d260-67fc-48d5-9bfb-6aa9e5f746cf 1e8c92551fa50b8bc8d1baef1008d799 { 'aliquot_tag': 'ALQ_bd6d2fc7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06087.miRNA-Seq.Tpb C3L-06087 AML miRNA-Seq tumor_peripheral_blood CPT0356680002 220125_UNC32-K00270_0311_AHMNYYBBXY_GGCTAC_S36_L002_R1_001.unaln.bam 282481513 BAM unaligned CPTAC3 1ffbe8d1-4921-4503-aa66-99174a4babcb 3c5dde5592c1567f047159876e2c6f98 { 'aliquot_tag': 'ALQ_25d91a6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06087.RNA-Seq.R1_L002.Tpb C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 211207_UNC32-K00270_0306_BHMW5YBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3677062427 FASTQ R1_L002 unaligned CPTAC3 2759438e-13fb-4a68-8f93-de762a312def 1842c9ac135f66ddfe6dd18e19bcc075 { 'aliquot_tag': 'ALQ_25d91a6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06087.RNA-Seq.R2_L002.Tpb C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 211207_UNC32-K00270_0306_BHMW5YBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 3865925400 FASTQ R2_L002 unaligned CPTAC3 7e2cbc0b-182d-45ba-873e-ef9ce51ced6b 905023f80dac9db3c861fac5cfc8c478 { 'aliquot_tag': 'ALQ_25d91a6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06087.miRNA-Seq.Tpb.hg38 C3L-06087 AML miRNA-Seq tumor_peripheral_blood CPT0356680002 381410a6-880a-49d5-80cf-f747b64b6178_mirnaseq_gdc_realn.bam 310821732 BAM harmonized CPTAC3 6baedf2d-2d6d-4540-9559-ba9c681070b2 adf5ba8378cc8fc975a37c490f8adb8c { 'aliquot_tag': 'ALQ_25d91a6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06087.RNA-Seq.chimeric.Tpb.hg38 C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 816404dc-8658-48a7-ae97-32ac4f35359f.rna_seq.chimeric.gdc_realn.bam 635846234 BAM chimeric harmonized CPTAC3 77b30bb3-065e-423b-8601-ccd607ba431c 26c6b5ae3e51053fad7928c395e9ab7f { 'aliquot_tag': 'ALQ_25d91a6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06087.RNA-Seq.genomic.Tpb.hg38 C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 816404dc-8658-48a7-ae97-32ac4f35359f.rna_seq.genomic.gdc_realn.bam 7351405463 BAM genomic harmonized CPTAC3 3947512f-2fee-47d8-8cde-26b732b03290 665c7d33adb013070948222d8bce3bfd { 'aliquot_tag': 'ALQ_25d91a6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06087.RNA-Seq.R1_L002.Tpb C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 211207_UNC32-K00270_0306_BHMW5YBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3677062427 FASTQ R1_L002 unaligned CPTAC3 2759438e-13fb-4a68-8f93-de762a312def 1842c9ac135f66ddfe6dd18e19bcc075 { 'aliquot_tag': 'ALQ_25d91a6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L002' } +C3L-06087.RNA-Seq.R2_L002.Tpb C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 211207_UNC32-K00270_0306_BHMW5YBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 3865925400 FASTQ R2_L002 unaligned CPTAC3 7e2cbc0b-182d-45ba-873e-ef9ce51ced6b 905023f80dac9db3c861fac5cfc8c478 { 'aliquot_tag': 'ALQ_25d91a6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L002' } +C3L-06087.RNA-Seq.transcriptome.Tpb.hg38 C3L-06087 AML RNA-Seq tumor_peripheral_blood CPT0356680002 816404dc-8658-48a7-ae97-32ac4f35359f.rna_seq.transcriptome.gdc_realn.bam 7223673189 BAM transcriptome harmonized CPTAC3 82345891-41c2-455e-838e-a2275397d2f1 aec6ac3105386e0e8f67d166d8af8a7a { 'aliquot_tag': 'ALQ_25d91a6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06087.WGS.Nbc C3L-06087 AML WGS buccal_normal CPT0356700002 CPT0356700002.WholeGenome.RP-2158.bam 50270177971 BAM aligned CPTAC3 7533aec2-9c1f-428a-b75d-5a84a7cfa118 96491a96fc590701bfe07e9118553d15 { 'aliquot_tag': 'ALQ_f97109c2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06087.WGS.Nbc.hg38 C3L-06087 AML WGS buccal_normal CPT0356700002 579e4cfb-2d2d-4a5d-abcf-a7766fb4d59f_wgs_gdc_realn.bam 144507062127 BAM harmonized CPTAC3 76fbce3e-9d03-4812-af81-48f4ece89e38 2dea2736e471629221c9115dd7697a7a { 'aliquot_tag': 'ALQ_f97109c2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06087.WGS.Tpb C3L-06087 AML WGS tumor_peripheral_blood CPT0356660002 CPT0356660002.WholeGenome.RP-2158.bam 46092867108 BAM aligned CPTAC3 38095b28-4be7-42d5-8ef5-cf5cddcec09b a689b00484d90360990a7a3e8e0d402c { 'aliquot_tag': 'ALQ_bd6d2fc7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06087.WGS.Tpb.hg38 C3L-06087 AML WGS tumor_peripheral_blood CPT0356660002 bf8b2dcf-d821-4d23-a22a-c87e6a1f3769_wgs_gdc_realn.bam 135893960716 BAM harmonized CPTAC3 da1742db-aaf8-4617-a695-fea2359a0c0b 115178bdb9822b39b6b234cd6243d97e { 'aliquot_tag': 'ALQ_bd6d2fc7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06087.WXS.Nbc C3L-06087 AML WXS buccal_normal CPT0356700002 CPT0356700002.WholeExome.RP-1303.bam 24355469682 BAM aligned CPTAC3 bd01e3d6-a5e0-460f-ae39-36f3e2c50162 9d23d63796b6ff87e0ec9a04d316ac5a { 'aliquot_tag': 'ALQ_f97109c2', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06087.WXS.Nbc.hg38 C3L-06087 AML WXS buccal_normal CPT0356700002 579e4cfb-2d2d-4a5d-abcf-a7766fb4d59f_wxs_gdc_realn.bam 33053744588 BAM harmonized CPTAC3 45604952-1385-4e46-b462-998b6208de8a 5f7a36c23498eaa5d9cbdd394276151c { 'aliquot_tag': 'ALQ_f97109c2', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06087.WXS.Tpb C3L-06087 AML WXS tumor_peripheral_blood CPT0356660002 CPT0356660002.WholeExome.RP-1303.bam 21862331049 BAM aligned CPTAC3 69c4d610-5bee-4387-bb4e-6b1d43942393 15b66325994ccbe7134822f2b3335b94 { 'aliquot_tag': 'ALQ_bd6d2fc7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06087.WXS.Tpb.hg38 C3L-06087 AML WXS tumor_peripheral_blood CPT0356660002 bf8b2dcf-d821-4d23-a22a-c87e6a1f3769_wxs_gdc_realn.bam 30153143018 BAM harmonized CPTAC3 e076dabd-9af6-4cd2-81cf-948c8212f335 282be9689415c28877ed826ac1cb81f3 { 'aliquot_tag': 'ALQ_bd6d2fc7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06089.MethArray.Green.Tpb C3L-06089 AML Methylation Array tumor_peripheral_blood CPT0356520002 205987770157_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 125345e9-608a-4efa-a0c8-dfc342530d5f 37680c62f8965f8bb35f6f8fbb6b70e7 { 'aliquot_tag': 'ALQ_ce79fba9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06089.MethArray.Red.Tpb C3L-06089 AML Methylation Array tumor_peripheral_blood CPT0356520002 205987770157_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 d32d96b3-ecaf-4c9c-b6f9-87e8d9e2d3bd 559b335ce9228794123312d473f3838d { 'aliquot_tag': 'ALQ_ce79fba9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06089.miRNA-Seq.Tpb C3L-06089 AML miRNA-Seq tumor_peripheral_blood CPT0356510002 220125_UNC32-K00270_0311_AHMNYYBBXY_CTCAGA_S13_L001_R1_001.unaln.bam 288610667 BAM unaligned CPTAC3 1d900a25-c657-422a-b043-10f9b3008738 02eb1ffacce75b1f04bd910ed967accc { 'aliquot_tag': 'ALQ_89d98179', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06089.RNA-Seq.R1_L005.Tpb C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 211207_UNC32-K00270_0305_AHMW37BBXY_GACCTGAA-TTGGTGAG_S19_L005_R1_001.fastq.gz 4099782324 FASTQ R1_L005 unaligned CPTAC3 b712df6d-c392-46bf-8466-ce7af45d8b74 8f15ea9bedc63b2ff1fe6d7b932508bf { 'aliquot_tag': 'ALQ_89d98179', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06089.RNA-Seq.R2_L005.Tpb C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 211207_UNC32-K00270_0305_AHMW37BBXY_GACCTGAA-TTGGTGAG_S19_L005_R2_001.fastq.gz 4372659822 FASTQ R2_L005 unaligned CPTAC3 8279bbfd-fc68-4b8e-96d6-a830a752527b d136f38f36eea2b6fd9a1197452fd30b { 'aliquot_tag': 'ALQ_89d98179', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06089.miRNA-Seq.Tpb.hg38 C3L-06089 AML miRNA-Seq tumor_peripheral_blood CPT0356510002 fb811d85-7701-44e3-80a2-7f45fc7260ee_mirnaseq_gdc_realn.bam 319030624 BAM harmonized CPTAC3 d3b71090-2df3-4c35-adcc-e10a5136a034 c3b1a9b84c2e15c2b91ff7ab133acf9c { 'aliquot_tag': 'ALQ_89d98179', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06089.RNA-Seq.chimeric.Tpb.hg38 C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 94697ad2-7174-44f5-ad6f-ba4ba801d9fa.rna_seq.chimeric.gdc_realn.bam 599505590 BAM chimeric harmonized CPTAC3 b9045acd-3a04-466b-86ce-38f66e15b66d ef8d2deb7486e83cff25289024723b7a { 'aliquot_tag': 'ALQ_89d98179', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06089.RNA-Seq.genomic.Tpb.hg38 C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 94697ad2-7174-44f5-ad6f-ba4ba801d9fa.rna_seq.genomic.gdc_realn.bam 8215952364 BAM genomic harmonized CPTAC3 a8591116-5067-45f8-8055-17cac5fa76c8 bebbc9ed0bf77ef653d5ad159f8e5bbf { 'aliquot_tag': 'ALQ_89d98179', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06089.RNA-Seq.R1_L005.Tpb C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 211207_UNC32-K00270_0305_AHMW37BBXY_GACCTGAA-TTGGTGAG_S19_L005_R1_001.fastq.gz 4099782324 FASTQ R1_L005 unaligned CPTAC3 b712df6d-c392-46bf-8466-ce7af45d8b74 8f15ea9bedc63b2ff1fe6d7b932508bf { 'aliquot_tag': 'ALQ_89d98179', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L005' } +C3L-06089.RNA-Seq.R2_L005.Tpb C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 211207_UNC32-K00270_0305_AHMW37BBXY_GACCTGAA-TTGGTGAG_S19_L005_R2_001.fastq.gz 4372659822 FASTQ R2_L005 unaligned CPTAC3 8279bbfd-fc68-4b8e-96d6-a830a752527b d136f38f36eea2b6fd9a1197452fd30b { 'aliquot_tag': 'ALQ_89d98179', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L005' } +C3L-06089.RNA-Seq.transcriptome.Tpb.hg38 C3L-06089 AML RNA-Seq tumor_peripheral_blood CPT0356510002 94697ad2-7174-44f5-ad6f-ba4ba801d9fa.rna_seq.transcriptome.gdc_realn.bam 12177283992 BAM transcriptome harmonized CPTAC3 331f3250-5b8e-49c7-b904-9a15eb676a80 55a827defa07de010589cc9b9127711d { 'aliquot_tag': 'ALQ_89d98179', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06089.WGS.Nbc C3L-06089 AML WGS buccal_normal CPT0356590003 CPT0356590003.WholeGenome.RP-2158.bam 46112083784 BAM aligned CPTAC3 059ba062-84e6-4b72-a806-2b39e6fe4714 2ad8dd8fcac053c9864439a5494a2724 { 'aliquot_tag': 'ALQ_ceaefa2e', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06089.WGS.Nbc.hg38 C3L-06089 AML WGS buccal_normal CPT0356590003 f89d1b24-bd26-4ce2-86eb-3d5b24ec170b_wgs_gdc_realn.bam 133693382041 BAM harmonized CPTAC3 08e06a2b-fa98-47c2-8e5d-8a17196c3211 385ebbf96b099eb301f9e45aa1dbb906 { 'aliquot_tag': 'ALQ_ceaefa2e', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06089.WGS.Tpb C3L-06089 AML WGS tumor_peripheral_blood CPT0356520002 CPT0356520002.WholeGenome.RP-2158.bam 43844001775 BAM aligned CPTAC3 2109b132-2eee-4d22-9a08-3e3f7ddfa23b 6f3d3edc48d24466ac7a34816a04e2e9 { 'aliquot_tag': 'ALQ_ce79fba9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06089.WGS.Tpb.hg38 C3L-06089 AML WGS tumor_peripheral_blood CPT0356520002 2f1ed585-fbde-4e6c-ab04-622098a497f1_wgs_gdc_realn.bam 128549005080 BAM harmonized CPTAC3 37b73a94-d717-4fad-b01b-6f184d89e923 9434efc5c9ae3e37b78c411d69c5e08b { 'aliquot_tag': 'ALQ_ce79fba9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06089.WXS.Nbc C3L-06089 AML WXS buccal_normal CPT0356590003 CPT0356590003.WholeExome.RP-1303.bam 27844450157 BAM aligned CPTAC3 97728e19-c8d4-4569-8d20-de6bcd58defe ac85dd76c874ebe2ac96e53117b96460 { 'aliquot_tag': 'ALQ_ceaefa2e', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06089.WXS.Nbc.hg38 C3L-06089 AML WXS buccal_normal CPT0356590003 f89d1b24-bd26-4ce2-86eb-3d5b24ec170b_wxs_gdc_realn.bam 37751006036 BAM harmonized CPTAC3 649cedd6-dca5-483a-a82b-5388be642838 8b04514b70104f2138504600bc663ce5 { 'aliquot_tag': 'ALQ_ceaefa2e', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06089.WXS.Tpb C3L-06089 AML WXS tumor_peripheral_blood CPT0356520002 CPT0356520002.WholeExome.RP-1303.bam 29490911091 BAM aligned CPTAC3 dff5bb4e-b7dc-4f75-aa8f-ce20176e4b82 577adb528d634aadcc438504dd56a880 { 'aliquot_tag': 'ALQ_ce79fba9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06089.WXS.Tpb.hg38 C3L-06089 AML WXS tumor_peripheral_blood CPT0356520002 2f1ed585-fbde-4e6c-ab04-622098a497f1_wxs_gdc_realn.bam 41009935022 BAM harmonized CPTAC3 0a9ebaa5-b7d2-4194-9574-334e4670fa24 eb4fb3af6673f0003f21a746a313a367 { 'aliquot_tag': 'ALQ_ce79fba9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06090.MethArray.Green.Tpb C3L-06090 AML Methylation Array tumor_peripheral_blood CPT0356900002 205707890036_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 4c1037d0-76b9-4120-8004-3cec3de72f19 13a83dcb8f786f1ac9479b00f3e07097 { 'aliquot_tag': 'ALQ_c37b68b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06090.MethArray.Red.Tpb C3L-06090 AML Methylation Array tumor_peripheral_blood CPT0356900002 205707890036_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 278d3f6b-b42b-4c39-a262-10b82fde2796 fa1d9e07005f2c778328c26d7d248a72 { 'aliquot_tag': 'ALQ_c37b68b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06090.miRNA-Seq.Tpb C3L-06090 AML miRNA-Seq tumor_peripheral_blood CPT0356930002 220125_UNC32-K00270_0311_AHMNYYBBXY_GACGAC_S14_L001_R1_001.unaln.bam 326420322 BAM unaligned CPTAC3 289adb3d-f77c-4b75-af9e-ea8350a2b2b5 ecbe113dda345b750c1fde90c1721818 { 'aliquot_tag': 'ALQ_84db1262', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06090.RNA-Seq.R1_L005.Tpb C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 211207_UNC32-K00270_0305_AHMW37BBXY_TCTCTACT-CGCGGTTC_S20_L005_R1_001.fastq.gz 3863859446 FASTQ R1_L005 unaligned CPTAC3 aced9574-d984-40e2-ad49-44cb32111bb8 c24fb4ac5c0c287a4e14d3cc74544b01 { 'aliquot_tag': 'ALQ_84db1262', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06090.RNA-Seq.R2_L005.Tpb C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 211207_UNC32-K00270_0305_AHMW37BBXY_TCTCTACT-CGCGGTTC_S20_L005_R2_001.fastq.gz 4193155097 FASTQ R2_L005 unaligned CPTAC3 8a865415-1cd7-45e3-8b19-187d4a706914 8cb5460bcb0670fc4c4a98154d950a7e { 'aliquot_tag': 'ALQ_84db1262', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06090.miRNA-Seq.Tpb.hg38 C3L-06090 AML miRNA-Seq tumor_peripheral_blood CPT0356930002 192f98b7-fc07-4d9a-a14e-3e16355e4077_mirnaseq_gdc_realn.bam 361230965 BAM harmonized CPTAC3 18e4e810-a344-4cdc-825d-74c474d43684 0dbb79c997c825e181eff2bac75a4207 { 'aliquot_tag': 'ALQ_84db1262', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06090.RNA-Seq.chimeric.Tpb.hg38 C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 0a39ab90-0018-4e97-b7c6-b8979751ae47.rna_seq.chimeric.gdc_realn.bam 535273210 BAM chimeric harmonized CPTAC3 76b39184-96d7-4e31-a21c-2684ad5a7e46 1cc960646454c595526d29ca4b676318 { 'aliquot_tag': 'ALQ_84db1262', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06090.RNA-Seq.genomic.Tpb.hg38 C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 0a39ab90-0018-4e97-b7c6-b8979751ae47.rna_seq.genomic.gdc_realn.bam 7815513794 BAM genomic harmonized CPTAC3 1ddbfb9a-50eb-4e36-981f-5a530fb79bbf 1cddecf85a252a6e589503025f0ff8ce { 'aliquot_tag': 'ALQ_84db1262', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06090.RNA-Seq.R1_L005.Tpb C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 211207_UNC32-K00270_0305_AHMW37BBXY_TCTCTACT-CGCGGTTC_S20_L005_R1_001.fastq.gz 3863859446 FASTQ R1_L005 unaligned CPTAC3 aced9574-d984-40e2-ad49-44cb32111bb8 c24fb4ac5c0c287a4e14d3cc74544b01 { 'aliquot_tag': 'ALQ_84db1262', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L005' } +C3L-06090.RNA-Seq.R2_L005.Tpb C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 211207_UNC32-K00270_0305_AHMW37BBXY_TCTCTACT-CGCGGTTC_S20_L005_R2_001.fastq.gz 4193155097 FASTQ R2_L005 unaligned CPTAC3 8a865415-1cd7-45e3-8b19-187d4a706914 8cb5460bcb0670fc4c4a98154d950a7e { 'aliquot_tag': 'ALQ_84db1262', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L005' } +C3L-06090.RNA-Seq.transcriptome.Tpb.hg38 C3L-06090 AML RNA-Seq tumor_peripheral_blood CPT0356930002 0a39ab90-0018-4e97-b7c6-b8979751ae47.rna_seq.transcriptome.gdc_realn.bam 10863648268 BAM transcriptome harmonized CPTAC3 972dd758-7065-4932-bdfb-6eecf0e43155 2eb1adabbb53b583ddd81c4735a1cfdf { 'aliquot_tag': 'ALQ_84db1262', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06090.WGS.Nbc C3L-06090 AML WGS buccal_normal CPT0356940003 CPT0356940003.WholeGenome.RP-2158.bam 43563326934 BAM aligned CPTAC3 1de5500b-e758-4a7d-8d7b-c55217754da0 5c02cb8490afcd3ea726ddacc1e29e85 { 'aliquot_tag': 'ALQ_41fcfee4', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06090.WGS.Nbc.hg38 C3L-06090 AML WGS buccal_normal CPT0356940003 1aeb5038-b0b7-42e0-b21a-b37af6897731_wgs_gdc_realn.bam 135844710501 BAM harmonized CPTAC3 a722364a-e5e2-4e48-b998-36ebf73181a1 697b0d275b1d605d0f201691a8fc9379 { 'aliquot_tag': 'ALQ_41fcfee4', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06090.WGS.Tpb C3L-06090 AML WGS tumor_peripheral_blood CPT0356900002 CPT0356900002.WholeGenome.RP-2158.bam 48011253955 BAM aligned CPTAC3 3757ffe8-d303-4046-8e19-8f85ec04be18 c33a610030846eb9a99a50dc390fa885 { 'aliquot_tag': 'ALQ_c37b68b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06090.WGS.Tpb.hg38 C3L-06090 AML WGS tumor_peripheral_blood CPT0356900002 0f430a1e-5857-4578-8cb3-f0557b75bf54_wgs_gdc_realn.bam 136604782264 BAM harmonized CPTAC3 0f011ecf-0b85-490f-9a3d-cc1a4ba0879a dae84c27eb9c8f3e3680b5b58b5ebee0 { 'aliquot_tag': 'ALQ_c37b68b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06090.WXS.Nbc C3L-06090 AML WXS buccal_normal CPT0356940003 CPT0356940003.WholeExome.RP-1303.bam 21293796280 BAM aligned CPTAC3 e46b4eda-af18-47fd-9f40-2de6cdecb47e 62a9d9c8c37a6a7010e1b17e0ab19378 { 'aliquot_tag': 'ALQ_41fcfee4', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06090.WXS.Nbc.hg38 C3L-06090 AML WXS buccal_normal CPT0356940003 1aeb5038-b0b7-42e0-b21a-b37af6897731_wxs_gdc_realn.bam 28827956277 BAM harmonized CPTAC3 71ab0872-716e-451f-8bcb-46b1805592cf 69fb1e4720cdf5fddca3ed59459730fb { 'aliquot_tag': 'ALQ_41fcfee4', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06090.WXS.Tpb C3L-06090 AML WXS tumor_peripheral_blood CPT0356900002 CPT0356900002.WholeExome.RP-1303.bam 22241932064 BAM aligned CPTAC3 9cb34e01-5744-40fd-89eb-b5fa99edc1cc e6cbec164fd2728e06fc9e49b4e4ac43 { 'aliquot_tag': 'ALQ_c37b68b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06166.RNA-Seq.R1_.T C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 20210723_P2_D1_WB7988-plate2_S37_R1_001.fastq.gz 3427273897 FASTQ R1_ unaligned CPTAC3 e4b7dcf5-c1c6-4e10-b6ab-89137e4be289 94fb955ed112911b77c7218cffdd52a1 { 'aliquot_tag': 'ALQ_b3016e19', 'gdc_sample_type': 'Primary Tumor' } -C3L-06166.RNA-Seq.R2_.T C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 20210723_P2_D1_WB7988-plate2_S37_R2_001.fastq.gz 3526630052 FASTQ R2_ unaligned CPTAC3 3e4d4f96-d06f-4f46-9a9c-db812695fad7 219f16bf9a2dc8ef4f2a1f297dc7eaf4 { 'aliquot_tag': 'ALQ_b3016e19', 'gdc_sample_type': 'Primary Tumor' } +C3L-06090.WXS.Tpb.hg38 C3L-06090 AML WXS tumor_peripheral_blood CPT0356900002 0f430a1e-5857-4578-8cb3-f0557b75bf54_wxs_gdc_realn.bam 30681620462 BAM harmonized CPTAC3 b39ab4d3-f21e-41b3-b0fc-5dd40fccfbaf 68c7f68b14d18aeee53c7fd872a5cc48 { 'aliquot_tag': 'ALQ_c37b68b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06166.RNA-Seq.chimeric.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.chimeric.gdc_realn.bam 88861301 BAM chimeric harmonized CPTAC3 c54cd277-680a-4d3e-9c42-1dd8e75693d6 da326df8209c8b5b6acc373370b2134a { 'aliquot_tag': 'ALQ_b3016e19', 'gdc_sample_type': 'Primary Tumor' } +C3L-06166.RNA-Seq.genomic.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.genomic.gdc_realn.bam 5519855623 BAM genomic harmonized CPTAC3 e508fdcd-20bd-439c-b659-e469956ddf50 dc428186305cb0ccbfa22eb0b55a9c69 { 'aliquot_tag': 'ALQ_b3016e19', 'gdc_sample_type': 'Primary Tumor' } +C3L-06166.RNA-Seq.T C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 20210723_P2_D1_WB7988-plate2_S37_R1_001.fastq.gz 3427273897 FASTQ unaligned CPTAC3 e4b7dcf5-c1c6-4e10-b6ab-89137e4be289 94fb955ed112911b77c7218cffdd52a1 +C3L-06166.RNA-Seq.T C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 20210723_P2_D1_WB7988-plate2_S37_R2_001.fastq.gz 3526630052 FASTQ unaligned CPTAC3 3e4d4f96-d06f-4f46-9a9c-db812695fad7 219f16bf9a2dc8ef4f2a1f297dc7eaf4 +C3L-06166.RNA-Seq.transcriptome.T.hg38 C3L-06166 HNSCC RNA-Seq tumor CPT0323490001 00f764db-a1d0-4906-968f-04c9bf41ac3e.rna_seq.transcriptome.gdc_realn.bam 4204271211 BAM transcriptome harmonized CPTAC3 f23ad4fd-42cd-48b3-b542-b1e2644c4965 0121f88d09d447efc02afdb585e5d920 { 'aliquot_tag': 'ALQ_b3016e19', 'gdc_sample_type': 'Primary Tumor' } C3L-06169.MethArray.Green.A C3L-06169 LSCC Methylation Array tissue_normal CPT0294650006 204372030013_R07C01_Grn.idat 13677895 IDAT Green NA CPTAC3 cb284767-1b7b-4954-909a-33cc49801f0f 492be39d2d4d51139311adabee644d3d { 'aliquot_tag': 'ALQ_2aeb812b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-06169.MethArray.Green.T C3L-06169 LSCC Methylation Array tumor CPT0294630006 204367490048_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 ce261e4a-0e6d-4b60-b19b-0eb5dcfc81c9 ae4a6f673d95da0978b4444b586c7b3c { 'aliquot_tag': 'ALQ_a5ab748b', 'gdc_sample_type': 'Primary Tumor' } C3L-06169.MethArray.Red.A C3L-06169 LSCC Methylation Array tissue_normal CPT0294650006 204372030013_R07C01_Red.idat 13677895 IDAT Red NA CPTAC3 3f30c251-ec13-4dd6-9379-959af7b85c02 fb9287134e52dad0fef0b12f9ab4d0f8 { 'aliquot_tag': 'ALQ_2aeb812b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -18127,16 +19570,16 @@ C3L-06169.miRNA-Seq.A C3L-06169 LSCC miRNA-Seq tissue_normal CPT0294650009 20051 C3L-06169.miRNA-Seq.A.hg38 C3L-06169 LSCC miRNA-Seq tissue_normal CPT0294650009 6f3caa02-68a0-46fa-b092-63e1efa39cfd_mirnaseq_gdc_realn.bam 277006476 BAM harmonized CPTAC3 de7f6291-7086-41c7-b85d-092b04531350 2197ba6ed4b843bf4b9d7ef9bd538558 { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-06169.miRNA-Seq.T C3L-06169 LSCC miRNA-Seq tumor CPT0294630009 200325_UNC31-K00269_0272_AHHC2NBBXY_TATAAT_S20_L001_R1_001.unaln.bam 258167066 BAM unaligned CPTAC3 41cb2a44-5f2b-4713-839a-538f9fb13edd e911944b48600476ee6ac8c117f70cd4 { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor' } C3L-06169.miRNA-Seq.T.hg38 C3L-06169 LSCC miRNA-Seq tumor CPT0294630009 429aefb3-fd55-4ebb-a462-0d4d61286a99_mirnaseq_gdc_realn.bam 279778633 BAM harmonized CPTAC3 c14c93c1-586e-4624-b9c7-b419f6ee6f18 89c5f621a23005ee6a050d8599824f96 { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor' } -C3L-06169.RNA-Seq.chimeric.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 d4d0d1b7-a2a2-4163-b3a7-eeb89a768707.rna_seq.chimeric.gdc_realn.bam 26455865 BAM chimeric harmonized CPTAC3 cc4ff1b9-a25a-4e5c-9417-33f2680e59f4 762a10522082a50932336b5ef2c41adc { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-06169.RNA-Seq.chimeric.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 aafcd592-f5e2-4b03-b091-a95afbf222cb.rna_seq.chimeric.gdc_realn.bam 56270647 BAM chimeric harmonized CPTAC3 9026031c-4c01-4f67-beaa-9c985c15b5b7 6f479c17e6be83caf3e3107b7e83539a { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor' } -C3L-06169.RNA-Seq.genomic.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 d4d0d1b7-a2a2-4163-b3a7-eeb89a768707.rna_seq.genomic.gdc_realn.bam 7962812169 BAM genomic harmonized CPTAC3 f2ea3a09-c352-41bf-a32b-fb85ca8be77c 2439f866e6d9b44b7167e19da67db74d { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-06169.RNA-Seq.genomic.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 aafcd592-f5e2-4b03-b091-a95afbf222cb.rna_seq.genomic.gdc_realn.bam 7866754357 BAM genomic harmonized CPTAC3 2ec34eb9-c825-4071-b65b-790878ab5db4 b47f4237f682c785079455ce7972c0ea { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor' } -C3L-06169.RNA-Seq.R1_L006.A C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTACGACA-GAGTCCAA_S22_L006_R1_001.fastq.gz 3521793454 FASTQ R1_L006 unaligned CPTAC3 36bc82c5-ec55-4d82-8120-70629a8fe622 7a96b35fe2d4d6181893618fea2540cf { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-06169.RNA-Seq.R1_L007.T C3L-06169 LSCC RNA-Seq tumor CPT0294630009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACGCACCT-GGTGAAGG_S28_L007_R1_001.fastq.gz 3992470249 FASTQ R1_L007 unaligned CPTAC3 3d44ddb4-1b20-43c1-9b8c-1edf4e3b2df3 c4f33ff0128fac25ccb1455d16f7cbb0 { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor' } -C3L-06169.RNA-Seq.R2_L006.A C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTACGACA-GAGTCCAA_S22_L006_R2_001.fastq.gz 4304341065 FASTQ R2_L006 unaligned CPTAC3 3daa5c88-e40a-4e3c-83e5-612807b983de 70d28c836ef7ca20d870d8bb1bbe30d2 { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-06169.RNA-Seq.R2_L007.T C3L-06169 LSCC RNA-Seq tumor CPT0294630009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACGCACCT-GGTGAAGG_S28_L007_R2_001.fastq.gz 4076167287 FASTQ R2_L007 unaligned CPTAC3 1450f737-61b9-4fae-a7b5-9139ab891db3 c59dc3eb56ba5487b456fade104cb452 { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor' } -C3L-06169.RNA-Seq.transcriptome.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 d4d0d1b7-a2a2-4163-b3a7-eeb89a768707.rna_seq.transcriptome.gdc_realn.bam 7841975760 BAM transcriptome harmonized CPTAC3 3e4213b9-1467-46f7-a68b-fe225ef6defd 783fa0b0b6f022c58acd87a5cec7cb90 { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-06169.RNA-Seq.transcriptome.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 aafcd592-f5e2-4b03-b091-a95afbf222cb.rna_seq.transcriptome.gdc_realn.bam 10395189679 BAM transcriptome harmonized CPTAC3 9f6541dd-1639-4d42-97ef-678350fb4d8c 01b3d245ba6f0c6319cf6ec437f57d0c { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor' } +C3L-06169.RNA-Seq.chimeric.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 a392aabf-e0b6-4cca-8575-58482499703d.rna_seq.chimeric.gdc_realn.bam 26431436 BAM chimeric harmonized CPTAC3 81fe3322-f9c5-425e-bcbe-2f411a91884f e9aed741935f32ad6c1dacdd6b74eba0 { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-06169.RNA-Seq.chimeric.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 f7265de5-1c58-4fb4-bef0-ffa105602218.rna_seq.chimeric.gdc_realn.bam 56269662 BAM chimeric harmonized CPTAC3 4953ec8d-9bfb-4844-aa79-822b3f476720 1291b1783d944119aaab879dd05073ae { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor' } +C3L-06169.RNA-Seq.genomic.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 a392aabf-e0b6-4cca-8575-58482499703d.rna_seq.genomic.gdc_realn.bam 7964382498 BAM genomic harmonized CPTAC3 85938f36-3a34-405f-bf99-0bdcfd95f331 08e748b6283995a667047519717e8ca5 { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-06169.RNA-Seq.genomic.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 f7265de5-1c58-4fb4-bef0-ffa105602218.rna_seq.genomic.gdc_realn.bam 7867809789 BAM genomic harmonized CPTAC3 7203d337-4936-4fcf-ad01-5fd4e29e396a 8d9f3bd936a2601caabdfa7b4308bf30 { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor' } +C3L-06169.RNA-Seq.R1_L006.A C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTACGACA-GAGTCCAA_S22_L006_R1_001.fastq.gz 3521793454 FASTQ R1_L006 unaligned CPTAC3 36bc82c5-ec55-4d82-8120-70629a8fe622 7a96b35fe2d4d6181893618fea2540cf { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3L-06169.RNA-Seq.R1_L007.T C3L-06169 LSCC RNA-Seq tumor CPT0294630009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACGCACCT-GGTGAAGG_S28_L007_R1_001.fastq.gz 3992470249 FASTQ R1_L007 unaligned CPTAC3 3d44ddb4-1b20-43c1-9b8c-1edf4e3b2df3 c4f33ff0128fac25ccb1455d16f7cbb0 { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3L-06169.RNA-Seq.R2_L006.A C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 200505_UNC32-K00270_0246_BHH5F5BBXY_CTACGACA-GAGTCCAA_S22_L006_R2_001.fastq.gz 4304341065 FASTQ R2_L006 unaligned CPTAC3 3daa5c88-e40a-4e3c-83e5-612807b983de 70d28c836ef7ca20d870d8bb1bbe30d2 { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3L-06169.RNA-Seq.R2_L007.T C3L-06169 LSCC RNA-Seq tumor CPT0294630009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACGCACCT-GGTGAAGG_S28_L007_R2_001.fastq.gz 4076167287 FASTQ R2_L007 unaligned CPTAC3 1450f737-61b9-4fae-a7b5-9139ab891db3 c59dc3eb56ba5487b456fade104cb452 { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3L-06169.RNA-Seq.transcriptome.A.hg38 C3L-06169 LSCC RNA-Seq tissue_normal CPT0294650009 a392aabf-e0b6-4cca-8575-58482499703d.rna_seq.transcriptome.gdc_realn.bam 8843694211 BAM transcriptome harmonized CPTAC3 38f12b4e-bc69-44de-901e-09e566a61f73 aa6f48dc94323e32e195b14416e5d7ac { 'aliquot_tag': 'ALQ_ba549cba', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-06169.RNA-Seq.transcriptome.T.hg38 C3L-06169 LSCC RNA-Seq tumor CPT0294630009 f7265de5-1c58-4fb4-bef0-ffa105602218.rna_seq.transcriptome.gdc_realn.bam 11636262843 BAM transcriptome harmonized CPTAC3 26f0da45-328e-43d5-8b7d-376e26d907db 188e99b4fc156c6f1b248719c18001f6 { 'aliquot_tag': 'ALQ_3514691a', 'gdc_sample_type': 'Primary Tumor' } C3L-06169.WGS.N C3L-06169 LSCC WGS blood_normal CPT0294750002 CPT0294750002.WholeGenome.RP-2158.bam 23131487388 BAM aligned CPTAC3 863ed97c-b507-40cc-9d52-eb9bc80f4dce f3be670ac2308b9ef6dd5c21a43d0f6e { 'aliquot_tag': 'ALQ_e6da9697', 'gdc_sample_type': 'Blood Derived Normal' } C3L-06169.WGS.N.hg38 C3L-06169 LSCC WGS blood_normal CPT0294750002 0eba5f38-b9b6-497d-87d8-5e5f04324c28_wgs_gdc_realn.bam 68073812557 BAM harmonized CPTAC3 535ed714-d6e5-4a74-99b7-ba78acdffa9a ca785a75ad07eacb80af64855f386356 { 'aliquot_tag': 'ALQ_e6da9697', 'gdc_sample_type': 'Blood Derived Normal' } C3L-06169.WGS.T C3L-06169 LSCC WGS tumor CPT0294630006 CPT0294630006.WholeGenome.RP-2158.bam 26327788819 BAM aligned CPTAC3 ccc003ce-b21b-405f-8a0e-4939ed785d28 5b7e1769250f6b95090e832ee88fb3c1 { 'aliquot_tag': 'ALQ_a5ab748b', 'gdc_sample_type': 'Primary Tumor' } @@ -18147,440 +19590,752 @@ C3L-06169.WXS.N C3L-06169 LSCC WXS blood_normal CPT0294750002 CPT0294750002.Whol C3L-06169.WXS.N.hg38 C3L-06169 LSCC WXS blood_normal CPT0294750002 0eba5f38-b9b6-497d-87d8-5e5f04324c28_wxs_gdc_realn.bam 36419327281 BAM harmonized CPTAC3 e4516e9f-55ec-4d26-95da-94432a652dd6 bb7d77083bd16a530863ad73f24f685f { 'aliquot_tag': 'ALQ_e6da9697', 'gdc_sample_type': 'Blood Derived Normal' } C3L-06169.WXS.T C3L-06169 LSCC WXS tumor CPT0294630006 CPT0294630006.WholeExome.RP-1303.bam 19082996953 BAM aligned CPTAC3 57f91759-b383-4792-971a-3402dfe2f5c4 71efa1f248b1785073c7aa2f2fea604d { 'aliquot_tag': 'ALQ_a5ab748b', 'gdc_sample_type': 'Primary Tumor' } C3L-06169.WXS.T.hg38 C3L-06169 LSCC WXS tumor CPT0294630006 4aa15ba7-8f09-406f-9950-0dbaad1751f0_wxs_gdc_realn.bam 26741225402 BAM harmonized CPTAC3 f1cc54af-4370-4abb-82c2-d0d4dc3f7591 6b4e5fc677d27ac25cc5b86a8223eb0e { 'aliquot_tag': 'ALQ_a5ab748b', 'gdc_sample_type': 'Primary Tumor' } +C3L-06352.MethArray.Green.Tpb C3L-06352 AML Methylation Array tumor_peripheral_blood CPT0323600002 205987780094_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 1d1c7158-0399-487d-b0c4-1ffee98a8a69 055d537c5585acfbc599cdaef8780f3a { 'aliquot_tag': 'ALQ_6ad0fcd9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06352.MethArray.Red.Tpb C3L-06352 AML Methylation Array tumor_peripheral_blood CPT0323600002 205987780094_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 49fca346-5913-4a2f-9a98-7bd5933f9003 3c4e93258408c0184ef883170f4f7722 { 'aliquot_tag': 'ALQ_6ad0fcd9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06352.miRNA-Seq.Tpb C3L-06352 AML miRNA-Seq tumor_peripheral_blood CPT0323610002 220125_UNC32-K00270_0311_AHMNYYBBXY_TACAGC_S16_L001_R1_001.unaln.bam 205706771 BAM unaligned CPTAC3 d956c69e-9c39-4a59-bba7-07646578e580 8d85195c2d541157f78c189911be2061 { 'aliquot_tag': 'ALQ_57b0d569', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06352.RNA-Seq.R1_L006.Tpb C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 211207_UNC32-K00270_0305_AHMW37BBXY_CCAAGTCT-AAGGATGA_S22_L006_R1_001.fastq.gz 3712758461 FASTQ R1_L006 unaligned CPTAC3 410f0722-f272-45d3-bb61-d02385a8dd41 7e625254b2148041f7a28e3639f4f0d3 { 'aliquot_tag': 'ALQ_57b0d569', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06352.RNA-Seq.R2_L006.Tpb C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 211207_UNC32-K00270_0305_AHMW37BBXY_CCAAGTCT-AAGGATGA_S22_L006_R2_001.fastq.gz 3973065633 FASTQ R2_L006 unaligned CPTAC3 94ab1d18-35e2-4337-8e4c-79dc8f176cf7 7e877e34ae95d15c4c0ba85fa22b22f6 { 'aliquot_tag': 'ALQ_57b0d569', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06352.miRNA-Seq.Tpb.hg38 C3L-06352 AML miRNA-Seq tumor_peripheral_blood CPT0323610002 da7b1cf6-bbce-4dcb-8dd0-cbd1333098a4_mirnaseq_gdc_realn.bam 227074556 BAM harmonized CPTAC3 444a7c94-15bc-4a6e-973d-db7308415f8a 2cd01cd62c31dfb0e543244de15c22e9 { 'aliquot_tag': 'ALQ_57b0d569', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06352.RNA-Seq.chimeric.Tpb.hg38 C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 339849db-44b1-4bd6-865f-bc3c0e2fbbde.rna_seq.chimeric.gdc_realn.bam 518916507 BAM chimeric harmonized CPTAC3 bed5c220-6fb6-443c-80e6-59103b056e40 eb925193739a84ef7d23b4f2d40f8ac9 { 'aliquot_tag': 'ALQ_57b0d569', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06352.RNA-Seq.genomic.Tpb.hg38 C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 339849db-44b1-4bd6-865f-bc3c0e2fbbde.rna_seq.genomic.gdc_realn.bam 7409333053 BAM genomic harmonized CPTAC3 df2eb2cf-9187-4bda-9fe4-071966a85514 839f97d20539d55d901dedfccb0e45c5 { 'aliquot_tag': 'ALQ_57b0d569', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06352.RNA-Seq.R1_L006.Tpb C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 211207_UNC32-K00270_0305_AHMW37BBXY_CCAAGTCT-AAGGATGA_S22_L006_R1_001.fastq.gz 3712758461 FASTQ R1_L006 unaligned CPTAC3 410f0722-f272-45d3-bb61-d02385a8dd41 7e625254b2148041f7a28e3639f4f0d3 { 'aliquot_tag': 'ALQ_57b0d569', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L006' } +C3L-06352.RNA-Seq.R2_L006.Tpb C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 211207_UNC32-K00270_0305_AHMW37BBXY_CCAAGTCT-AAGGATGA_S22_L006_R2_001.fastq.gz 3973065633 FASTQ R2_L006 unaligned CPTAC3 94ab1d18-35e2-4337-8e4c-79dc8f176cf7 7e877e34ae95d15c4c0ba85fa22b22f6 { 'aliquot_tag': 'ALQ_57b0d569', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L006' } +C3L-06352.RNA-Seq.transcriptome.Tpb.hg38 C3L-06352 AML RNA-Seq tumor_peripheral_blood CPT0323610002 339849db-44b1-4bd6-865f-bc3c0e2fbbde.rna_seq.transcriptome.gdc_realn.bam 7791025996 BAM transcriptome harmonized CPTAC3 90e5bdbb-b9a2-4724-9a3d-e9bc9379e248 da55d7c26252b41519c47a93ab11bc1d { 'aliquot_tag': 'ALQ_57b0d569', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06352.WGS.Nbc C3L-06352 AML WGS buccal_normal CPT0323570003 CPT0323570003.WholeGenome.RP-2158.bam 42112140789 BAM aligned CPTAC3 3b6969ce-e96b-4319-b1ec-b571378c826f 6622eb6d2ad9073525c42f51ae92c150 { 'aliquot_tag': 'ALQ_296362f1', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06352.WGS.Nbc.hg38 C3L-06352 AML WGS buccal_normal CPT0323570003 8f59793f-4cee-4f3f-a8ef-4203804d115b_wgs_gdc_realn.bam 123922636659 BAM harmonized CPTAC3 27595487-bbe0-436e-b38c-1d86aa50d8b0 31d9be2554d937486f907fa66ffa25ca { 'aliquot_tag': 'ALQ_296362f1', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06352.WGS.Tpb C3L-06352 AML WGS tumor_peripheral_blood CPT0323600002 CPT0323600002.WholeGenome.RP-2158.bam 55820043679 BAM aligned CPTAC3 83adf58f-bf8e-48c6-90fc-f3ee03c01661 11f29e029febb0269c24401e0a30ca1b { 'aliquot_tag': 'ALQ_6ad0fcd9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06352.WGS.Tpb.hg38 C3L-06352 AML WGS tumor_peripheral_blood CPT0323600002 686262c4-f449-4965-b65c-27019801671d_wgs_gdc_realn.bam 169114943867 BAM harmonized CPTAC3 17c81b9e-2685-4178-8bb1-046c9380bfba c7da80d8a3d181877b248f896bee1594 { 'aliquot_tag': 'ALQ_6ad0fcd9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06352.WXS.Nbc C3L-06352 AML WXS buccal_normal CPT0323570003 CPT0323570003.WholeExome.RP-1303.bam 30059228254 BAM aligned CPTAC3 7e57c65c-2fef-4746-b7f9-63d723d05d13 13a861e0c96ffcc91dcfe64c7878d095 { 'aliquot_tag': 'ALQ_296362f1', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06352.WXS.Nbc.hg38 C3L-06352 AML WXS buccal_normal CPT0323570003 8f59793f-4cee-4f3f-a8ef-4203804d115b_wxs_gdc_realn.bam 41208313693 BAM harmonized CPTAC3 f09dcaa8-87ac-4636-aec0-3b31d72597e9 ad5e6e41527eee6aaeeccbd5f0cdd21b { 'aliquot_tag': 'ALQ_296362f1', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06352.WXS.Tpb C3L-06352 AML WXS tumor_peripheral_blood CPT0323600002 CPT0323600002.WholeExome.RP-1303.bam 24667448921 BAM aligned CPTAC3 331f7922-6dfb-49fc-a9b2-3f8fabcffeab e9f6511d11cf54b591a8b23c8bd2592e { 'aliquot_tag': 'ALQ_6ad0fcd9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06352.WXS.Tpb.hg38 C3L-06352 AML WXS tumor_peripheral_blood CPT0323600002 686262c4-f449-4965-b65c-27019801671d_wxs_gdc_realn.bam 33935153637 BAM harmonized CPTAC3 a47a0dda-4b98-478b-ae1f-3220e5d4b9b8 9634c8c218279e62b7cdeccdbcd9bb7d { 'aliquot_tag': 'ALQ_6ad0fcd9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06356.MethArray.Green.Tbm C3L-06356 AML Methylation Array tumor_bone_marrow CPT0345400002 205555390164_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 97dbc112-7de3-4c3f-b028-bbd2114d73b0 8876cdb806c9ba08f77e1e86f5aa0744 { 'aliquot_tag': 'ALQ_82a7616f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06356.MethArray.Red.Tbm C3L-06356 AML Methylation Array tumor_bone_marrow CPT0345400002 205555390164_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 c112e12c-314c-4068-aa48-e6b7d200a4df 89eca0030ed0ad2bf620a10e376cc1dc { 'aliquot_tag': 'ALQ_82a7616f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06356.miRNA-Seq.Tbm C3L-06356 AML miRNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC31-K00269_0297_AHKCFKBBXY_GCCAAT_S24_L007_R1_001.unaln.bam 251208109 BAM unaligned CPTAC3 9ace19a4-0bbb-4f1e-b11a-e833f2803278 56f05e7386b26ef2141e7d79ff23d478 { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06356.miRNA-Seq.Tbm.hg38 C3L-06356 AML miRNA-Seq tumor_bone_marrow CPT0345410002 f279d895-adb4-4952-8071-e01ffb8add5a_mirnaseq_gdc_realn.bam 276594644 BAM harmonized CPTAC3 85378ee8-d4ce-43ba-be5d-8be0de927d46 53f97210688d01ec132f0f9c36f2b1e4 { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06356.RNA-Seq.chimeric.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 5bc6d131-7d5b-4d6a-9111-5b6a09a9b48d.rna_seq.chimeric.gdc_realn.bam 79673030 BAM chimeric harmonized CPTAC3 5f27afc3-b0bc-42ec-96fb-c6ea61c37021 bcd66bcf27341b81c6bd46b07d5957a4 { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06356.RNA-Seq.genomic.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 5bc6d131-7d5b-4d6a-9111-5b6a09a9b48d.rna_seq.genomic.gdc_realn.bam 6787466005 BAM genomic harmonized CPTAC3 4917427c-3649-4c5d-aa85-965691523dc0 1bb591d4bc672b29f0dfc8f8be423f77 { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06356.RNA-Seq.R1_L002.Tbm C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC32-K00270_0278_AHL3YTBBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 3354501657 FASTQ R1_L002 unaligned CPTAC3 982e7649-c13c-4393-b05e-0d1ac8228221 c44535a802deff475b20563b55ede329 { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06356.RNA-Seq.R2_L002.Tbm C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC32-K00270_0278_AHL3YTBBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 3644776298 FASTQ R2_L002 unaligned CPTAC3 42345a72-3860-463d-bccb-53bd28182ed9 00b213ba12c54b566dfaa5ec9dcba834 { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06356.RNA-Seq.transcriptome.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 5bc6d131-7d5b-4d6a-9111-5b6a09a9b48d.rna_seq.transcriptome.gdc_realn.bam 7087011285 BAM transcriptome harmonized CPTAC3 81c0e4a2-895f-4360-bfb8-3f613a7ec2b4 cb9ee8368cd2ab2ea15e79d9abdfcfe1 { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06356.RNA-Seq.chimeric.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 188f2a82-b4a3-4221-8e0c-d7828501ad29.rna_seq.chimeric.gdc_realn.bam 79657723 BAM chimeric harmonized CPTAC3 f4274578-1a03-4192-930d-d8f2075507fe 4f92f13f290bbe804f9ca8b46c1d98ed { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06356.RNA-Seq.genomic.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 188f2a82-b4a3-4221-8e0c-d7828501ad29.rna_seq.genomic.gdc_realn.bam 6793964486 BAM genomic harmonized CPTAC3 3a9113a3-17a1-4b07-8fd8-0bdb076ec586 3dba23cc3f535a0b343ecbfad8d4a1de { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06356.RNA-Seq.R1_L002.Tbm C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC32-K00270_0278_AHL3YTBBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 3354501657 FASTQ R1_L002 unaligned CPTAC3 982e7649-c13c-4393-b05e-0d1ac8228221 c44535a802deff475b20563b55ede329 { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-06356.RNA-Seq.R2_L002.Tbm C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 210331_UNC32-K00270_0278_AHL3YTBBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 3644776298 FASTQ R2_L002 unaligned CPTAC3 42345a72-3860-463d-bccb-53bd28182ed9 00b213ba12c54b566dfaa5ec9dcba834 { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-06356.RNA-Seq.transcriptome.Tbm.hg38 C3L-06356 AML RNA-Seq tumor_bone_marrow CPT0345410002 188f2a82-b4a3-4221-8e0c-d7828501ad29.rna_seq.transcriptome.gdc_realn.bam 8182887652 BAM transcriptome harmonized CPTAC3 0c236da3-5602-4948-ba04-8fc21ab32111 a0ebc22ca1964a9a245d46f2f1d5f179 { 'aliquot_tag': 'ALQ_bfc748df', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06356.WGS.Nbc C3L-06356 AML WGS buccal_normal CPT0345370003 CPT0345370003.WholeGenome.RP-2158.bam 48252315460 BAM aligned CPTAC3 7ac2c1f7-595b-4c3d-9027-965910946d8a f6730c26502c1dd1a42e9f37b40c370d { 'aliquot_tag': 'ALQ_5a85bd51', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06356.WGS.Nbc.hg38 C3L-06356 AML WGS buccal_normal CPT0345370003 6c71a839-ca6c-4b1c-b42b-c9c7621bdfe9_wgs_gdc_realn.bam 146301175318 BAM harmonized CPTAC3 77636d17-c52a-44b3-9a13-5a4a0e06d660 5b1beb789e3077f2ead18d3155582620 { 'aliquot_tag': 'ALQ_5a85bd51', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06356.WGS.Tbm C3L-06356 AML WGS tumor_bone_marrow CPT0345400002 CPT0345400002.WholeGenome.RP-2158.bam 50235996699 BAM aligned CPTAC3 b7068ea0-6b4d-4840-96be-636f9a0908db cd6f23a4cbfc2c29ba1229bb96c90ec9 { 'aliquot_tag': 'ALQ_82a7616f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06356.WGS.Tbm.hg38 C3L-06356 AML WGS tumor_bone_marrow CPT0345400002 cb6684bd-ab94-47bb-948f-14e8dc209b0e_wgs_gdc_realn.bam 150032150896 BAM harmonized CPTAC3 7e9fdf55-4553-45ce-b272-d72a89ebeccd bba8ad155bb88195f435179077464b3b { 'aliquot_tag': 'ALQ_82a7616f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06356.WXS.Nbc C3L-06356 AML WXS buccal_normal CPT0345370003 CPT0345370003.WholeExome.RP-1303.bam 31532076442 BAM aligned CPTAC3 cd9059cf-fad4-4108-8889-200bb9189a3b ddb13f8834b9850300357b8bc853ec26 { 'aliquot_tag': 'ALQ_5a85bd51', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06356.WXS.Nbc.hg38 C3L-06356 AML WXS buccal_normal CPT0345370003 6c71a839-ca6c-4b1c-b42b-c9c7621bdfe9_wxs_gdc_realn.bam 44119199249 BAM harmonized CPTAC3 87a3ee1c-badb-4f3b-af8e-6ad4f68b7be8 caa855b88e5b50e29de518bad89b1232 { 'aliquot_tag': 'ALQ_5a85bd51', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06356.WXS.Tbm C3L-06356 AML WXS tumor_bone_marrow CPT0345400002 CPT0345400002.WholeExome.RP-1303.bam 26468768432 BAM aligned CPTAC3 ab5e7de8-ab4f-44e1-b317-04a309e5dc82 7dc91b6ff48b7b3322bc62612a6aee4b { 'aliquot_tag': 'ALQ_82a7616f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06356.WXS.Tbm.hg38 C3L-06356 AML WXS tumor_bone_marrow CPT0345400002 cb6684bd-ab94-47bb-948f-14e8dc209b0e_wxs_gdc_realn.bam 37177646298 BAM harmonized CPTAC3 2493d649-636d-4750-b041-634e8ead6c2f 1214f88b43c6097f598361684354e44f { 'aliquot_tag': 'ALQ_82a7616f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06357.MethArray.Green.Tbm C3L-06357 AML Methylation Array tumor_bone_marrow CPT0345500002 204930640111_R02C01_Grn.idat 13677960 IDAT Green NA CPTAC3 35b81a62-b1e6-4083-a8d5-261b0e301db4 a849659a3d52804956bb7c4b301f6dfe { 'aliquot_tag': 'ALQ_49fbb2ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06357.MethArray.Red.Tbm C3L-06357 AML Methylation Array tumor_bone_marrow CPT0345500002 204930640111_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 be543670-c9d6-40e8-a3c7-77644149bed5 b9ed5979343986dd09426b7c04c9abeb { 'aliquot_tag': 'ALQ_49fbb2ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06357.miRNA-Seq.Tbm C3L-06357 AML miRNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC31-K00269_0297_AHKCFKBBXY_CAGATC_S20_L007_R1_001.unaln.bam 179816208 BAM unaligned CPTAC3 830dbcbb-a1fc-4b75-aca1-4d8c7e115aaf 1d22e3e2f1487b9808c740d117acb670 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06357.miRNA-Seq.Tbm.hg38 C3L-06357 AML miRNA-Seq tumor_bone_marrow CPT0345510002 c2dff194-89fd-42da-aeb1-af413d1c9291_mirnaseq_gdc_realn.bam 192485380 BAM harmonized CPTAC3 43d3f986-b039-4a99-86ed-1225889447bc 903b86ecf33d468e855506214ab420f0 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06357.RNA-Seq.chimeric.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 3dbdd92e-e70e-496b-9676-f5bc42aa1065.rna_seq.chimeric.gdc_realn.bam 163046695 BAM chimeric harmonized CPTAC3 a5ea2f8a-7b4b-40c7-9e0b-2e5a0107162f 94d0711aa24315e95a2312793cd06f99 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06357.RNA-Seq.genomic.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 3dbdd92e-e70e-496b-9676-f5bc42aa1065.rna_seq.genomic.gdc_realn.bam 9533834279 BAM genomic harmonized CPTAC3 17200710-e2b7-4302-ae1e-3940951d2ab2 06c76b070e495e329cc8a9f96d28d100 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06357.RNA-Seq.R1_L002.Tbm C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC32-K00270_0278_AHL3YTBBXY_CAAGCTAG-ACATAGCG_S6_L002_R1_001.fastq.gz 4878621442 FASTQ R1_L002 unaligned CPTAC3 ec1e8eae-c0b1-4f4f-84a1-7c89b4de576a f7165f7c2aa884755c4826a524f30b64 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06357.RNA-Seq.R2_L002.Tbm C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC32-K00270_0278_AHL3YTBBXY_CAAGCTAG-ACATAGCG_S6_L002_R2_001.fastq.gz 5400504085 FASTQ R2_L002 unaligned CPTAC3 e5daae8a-9e87-4dde-a643-4063ff946fc6 dcbfb2fc4663176a129316f035bd3049 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06357.RNA-Seq.transcriptome.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 3dbdd92e-e70e-496b-9676-f5bc42aa1065.rna_seq.transcriptome.gdc_realn.bam 12680004651 BAM transcriptome harmonized CPTAC3 5c5f9558-fff2-4b19-bfc4-4bfadb88b638 664fb77c64be5b9e6a363c55e755f626 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06357.RNA-Seq.chimeric.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 247cb10a-36f5-4740-a1f6-f0531bfc0c5b.rna_seq.chimeric.gdc_realn.bam 163160573 BAM chimeric harmonized CPTAC3 5d8cabbc-d0cf-43cd-b935-bb64a9dcb4e0 82210fbd8a89ea54fb35ecbdd25c479d { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06357.RNA-Seq.genomic.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 247cb10a-36f5-4740-a1f6-f0531bfc0c5b.rna_seq.genomic.gdc_realn.bam 9544647466 BAM genomic harmonized CPTAC3 eb47d829-8369-4411-9481-2eb11a4ae6f0 fe9e320e3e5c8081c346873ed4fb84f0 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06357.RNA-Seq.R1_L002.Tbm C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC32-K00270_0278_AHL3YTBBXY_CAAGCTAG-ACATAGCG_S6_L002_R1_001.fastq.gz 4878621442 FASTQ R1_L002 unaligned CPTAC3 ec1e8eae-c0b1-4f4f-84a1-7c89b4de576a f7165f7c2aa884755c4826a524f30b64 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-06357.RNA-Seq.R2_L002.Tbm C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 210331_UNC32-K00270_0278_AHL3YTBBXY_CAAGCTAG-ACATAGCG_S6_L002_R2_001.fastq.gz 5400504085 FASTQ R2_L002 unaligned CPTAC3 e5daae8a-9e87-4dde-a643-4063ff946fc6 dcbfb2fc4663176a129316f035bd3049 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-06357.RNA-Seq.transcriptome.Tbm.hg38 C3L-06357 AML RNA-Seq tumor_bone_marrow CPT0345510002 247cb10a-36f5-4740-a1f6-f0531bfc0c5b.rna_seq.transcriptome.gdc_realn.bam 13950974279 BAM transcriptome harmonized CPTAC3 1cf09892-a0e8-4cf8-9881-2e7cbf08a68c ae1766f440f0426d26e2707a50dda499 { 'aliquot_tag': 'ALQ_749b9b7a', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06357.WGS.Nbc C3L-06357 AML WGS buccal_normal CPT0345470003 CPT0345470003.WholeGenome.RP-2158.bam 50526220414 BAM aligned CPTAC3 f189f79f-e7be-4668-a0d0-00184f05f3d7 114cf72062570c44770f374e024b6ccd { 'aliquot_tag': 'ALQ_47808de9', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06357.WGS.Nbc.hg38 C3L-06357 AML WGS buccal_normal CPT0345470003 38def854-7f69-4574-8538-a33f2ddac72d_wgs_gdc_realn.bam 147818241279 BAM harmonized CPTAC3 0ae5fa74-35c4-400e-8946-969a354b3d0d 0cb9027e63e110b989ca20f9adda4bf1 { 'aliquot_tag': 'ALQ_47808de9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06357.WGS.Tbm C3L-06357 AML WGS tumor_bone_marrow CPT0345500002 CPT0345500002.WholeGenome.RP-2158.bam 51968178021 BAM aligned CPTAC3 dbc357e6-d7bd-41fd-be21-d8a6a6db81ba 1c0f309cb864d12ab1afe2d5e7ffea8d { 'aliquot_tag': 'ALQ_49fbb2ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06357.WGS.Tbm.hg38 C3L-06357 AML WGS tumor_bone_marrow CPT0345500002 e9027e42-32a8-4775-b3b5-35a50556e467_wgs_gdc_realn.bam 157174880176 BAM harmonized CPTAC3 f0b7f86b-7fb4-4f2d-8d51-0f71d8cb3d84 569515849d452e6316e6be08ed0e86ad { 'aliquot_tag': 'ALQ_49fbb2ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06357.WXS.Nbc C3L-06357 AML WXS buccal_normal CPT0345470003 CPT0345470003.WholeExome.RP-1303.bam 26147005652 BAM aligned CPTAC3 4b35fea2-1534-4144-9c13-d703373be3a1 a0c14cbd52d7025ac070e9ff7b5ee1a5 { 'aliquot_tag': 'ALQ_47808de9', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06357.WXS.Nbc.hg38 C3L-06357 AML WXS buccal_normal CPT0345470003 38def854-7f69-4574-8538-a33f2ddac72d_wxs_gdc_realn.bam 36611768867 BAM harmonized CPTAC3 27df62fa-1212-431d-8211-9981886b123d 9c8d7c8df01fa85f7e34e45d37e8da86 { 'aliquot_tag': 'ALQ_47808de9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06357.WXS.Tbm C3L-06357 AML WXS tumor_bone_marrow CPT0345500002 CPT0345500002.WholeExome.RP-1303.bam 21412179681 BAM aligned CPTAC3 2d38bd3e-a284-40b2-8a6e-bf9d0e14bd6f 77cb4e63410d0c03712a253697097778 { 'aliquot_tag': 'ALQ_49fbb2ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06357.WXS.Tbm.hg38 C3L-06357 AML WXS tumor_bone_marrow CPT0345500002 e9027e42-32a8-4775-b3b5-35a50556e467_wxs_gdc_realn.bam 29740004887 BAM harmonized CPTAC3 2fecf565-75c1-4474-a90e-30201dc60394 cdb8e737e10452f28bbba58027263b30 { 'aliquot_tag': 'ALQ_49fbb2ca', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06361.MethArray.Green.Tbm C3L-06361 AML Methylation Array tumor_bone_marrow CPT0345610002 205555390128_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2026d108-87b9-4803-b924-34db203c40e5 29235d0d9739a3f7862a2efc9661965d { 'aliquot_tag': 'ALQ_f20fe9d4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06361.MethArray.Red.Tbm C3L-06361 AML Methylation Array tumor_bone_marrow CPT0345610002 205555390128_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 0a27b125-62a5-49e2-b3be-3464c76f2811 42b184919ce526bef9e4e52692cbfb11 { 'aliquot_tag': 'ALQ_f20fe9d4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06361.miRNA-Seq.Tbm C3L-06361 AML miRNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC31-K00269_0297_AHKCFKBBXY_ACTTGA_S15_L007_R1_001.unaln.bam 201814939 BAM unaligned CPTAC3 fb9945a0-1025-40fd-9b6d-de0968f78862 4574006d61a22fe641b3218967bd9915 { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06361.miRNA-Seq.Tbm.hg38 C3L-06361 AML miRNA-Seq tumor_bone_marrow CPT0345620002 d98b9f07-f33f-4100-b762-329adc0cf2cd_mirnaseq_gdc_realn.bam 223143668 BAM harmonized CPTAC3 905ed7ac-b3ed-4d32-b15c-3eb3aa0be6c4 97663b19a158707bfaa8cb074fd54016 { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06361.RNA-Seq.chimeric.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.chimeric.gdc_realn.bam 107094388 BAM chimeric harmonized CPTAC3 a761f00f-c5b5-43ae-94bd-88b78e413432 a18dae88cf214917979ed6557076c08d { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06361.RNA-Seq.genomic.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.genomic.gdc_realn.bam 8021143089 BAM genomic harmonized CPTAC3 8c150f9d-6037-4fa2-905b-693a2a1ddf38 299a7b23ad190b470301243651e5feaa { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06361.RNA-Seq.R1_L002.Tbm C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC32-K00270_0278_AHL3YTBBXY_TGGATCGA-GTGCGATA_S8_L002_R1_001.fastq.gz 3984018859 FASTQ R1_L002 unaligned CPTAC3 22f88357-a1a0-4130-9373-ede06a3ee0d8 18c33a95fd2bb3c6770241ae08fac556 { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06361.RNA-Seq.R2_L002.Tbm C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC32-K00270_0278_AHL3YTBBXY_TGGATCGA-GTGCGATA_S8_L002_R2_001.fastq.gz 4397216742 FASTQ R2_L002 unaligned CPTAC3 44c74e6a-9e07-4895-9db3-443802ec3baa 812c73313915a7eab1a7e33772a0d293 { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06361.RNA-Seq.transcriptome.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.transcriptome.gdc_realn.bam 10281809039 BAM transcriptome harmonized CPTAC3 4624bb46-1c5d-439b-8649-4a2865551327 019a5f380e6f847f1c1a1d1c4715f718 { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06361.RNA-Seq.chimeric.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.chimeric.gdc_realn.bam 107094388 BAM chimeric harmonized CPTAC3 695b1c20-df43-4b00-a41f-2dbb74616b51 a18dae88cf214917979ed6557076c08d { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06361.RNA-Seq.genomic.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.genomic.gdc_realn.bam 8021143089 BAM genomic harmonized CPTAC3 3957fa69-3161-4368-8db1-11b689f1b1e1 299a7b23ad190b470301243651e5feaa { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06361.RNA-Seq.R1_L002.Tbm C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC32-K00270_0278_AHL3YTBBXY_TGGATCGA-GTGCGATA_S8_L002_R1_001.fastq.gz 3984018859 FASTQ R1_L002 unaligned CPTAC3 22f88357-a1a0-4130-9373-ede06a3ee0d8 18c33a95fd2bb3c6770241ae08fac556 { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-06361.RNA-Seq.R2_L002.Tbm C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 210331_UNC32-K00270_0278_AHL3YTBBXY_TGGATCGA-GTGCGATA_S8_L002_R2_001.fastq.gz 4397216742 FASTQ R2_L002 unaligned CPTAC3 44c74e6a-9e07-4895-9db3-443802ec3baa 812c73313915a7eab1a7e33772a0d293 { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-06361.RNA-Seq.transcriptome.Tbm.hg38 C3L-06361 AML RNA-Seq tumor_bone_marrow CPT0345620002 dc829352-448d-4cb1-84ef-84a6f3544240.rna_seq.transcriptome.gdc_realn.bam 10281809039 BAM transcriptome harmonized CPTAC3 ac125192-2b26-453c-97aa-acbe528d68b3 019a5f380e6f847f1c1a1d1c4715f718 { 'aliquot_tag': 'ALQ_b5af9304', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06361.WGS.Tbm C3L-06361 AML WGS tumor_bone_marrow CPT0345610002 CPT0345610002.WholeGenome.RP-2158.bam 49357606952 BAM aligned CPTAC3 aa2fa1d3-f026-4c30-8499-199097ec3d65 352b8105c86ead1db8d2042cc202a04e { 'aliquot_tag': 'ALQ_f20fe9d4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06361.WGS.Tbm.hg38 C3L-06361 AML WGS tumor_bone_marrow CPT0345610002 2ad00ca6-3988-4545-b340-4d7bf367c999_wgs_gdc_realn.bam 138306388754 BAM harmonized CPTAC3 3f00b827-56dc-41a1-ad3b-6c22d7f9b007 5136acbb7f2d201071b0466b7c5ec7c7 { 'aliquot_tag': 'ALQ_f20fe9d4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06361.WXS.Nbc C3L-06361 AML WXS buccal_normal CPT0345580003 CPT0345580003.WholeExome.RP-1303.bam 27053926560 BAM aligned CPTAC3 4f572ab2-fc2c-4c3a-b01c-02ec710a6feb bb1237acc17d97af65ec94e3cdadeb49 { 'aliquot_tag': 'ALQ_e8cc99d', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06361.WXS.Nbc.hg38 C3L-06361 AML WXS buccal_normal CPT0345580003 b6af685c-5835-4a9f-9122-16af2393145e_wxs_gdc_realn.bam 36905068313 BAM harmonized CPTAC3 da2e2061-120f-44eb-90c4-e49d0abe0df4 190120d37819b67c2e582ddbd338b746 { 'aliquot_tag': 'ALQ_e8cc99d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06361.WXS.Tbm C3L-06361 AML WXS tumor_bone_marrow CPT0345610002 CPT0345610002.WholeExome.RP-1303.bam 27276242048 BAM aligned CPTAC3 7ce15406-83cc-4f64-b510-0b5e8f057478 9199c51b80fd428ba6fffd49357c6f15 { 'aliquot_tag': 'ALQ_f20fe9d4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06361.WXS.Tbm.hg38 C3L-06361 AML WXS tumor_bone_marrow CPT0345610002 2ad00ca6-3988-4545-b340-4d7bf367c999_wxs_gdc_realn.bam 38548533226 BAM harmonized CPTAC3 7b21cc41-fe38-43fe-b81c-d4a64da6761a f4882f757eb174e63d45807612423aaf { 'aliquot_tag': 'ALQ_f20fe9d4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06364.MethArray.Green.Tbm C3L-06364 AML Methylation Array tumor_bone_marrow CPT0345720002 205555390174_R03C01_Grn.idat 13677965 IDAT Green NA CPTAC3 c522cd8e-5d65-4836-b04e-60da756a483a 02ff8cd072e47c4e002c6ffd974f149d { 'aliquot_tag': 'ALQ_7ef340a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06364.MethArray.Red.Tbm C3L-06364 AML Methylation Array tumor_bone_marrow CPT0345720002 205555390174_R03C01_Red.idat 13677965 IDAT Red NA CPTAC3 63957fb6-4554-48ee-a110-778652c31dab d1728eb2c00a9d424761f00f25ee9fae { 'aliquot_tag': 'ALQ_7ef340a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06364.miRNA-Seq.Tbm C3L-06364 AML miRNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC31-K00269_0297_AHKCFKBBXY_GATCAG_S23_L007_R1_001.unaln.bam 224232551 BAM unaligned CPTAC3 73d5f6bc-fe37-479d-b327-e7f24101a6c2 e57566fbe1e788407f37dfd0145dfece { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06364.miRNA-Seq.Tbm.hg38 C3L-06364 AML miRNA-Seq tumor_bone_marrow CPT0345730002 48fe5fe7-03cc-4705-97c8-31b0d81575d7_mirnaseq_gdc_realn.bam 240428330 BAM harmonized CPTAC3 f362b63a-0c7c-4d33-870c-e9c1e276ed6d 118ab3b987a29129b0e6826060970b8e { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06364.RNA-Seq.chimeric.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 2f9c36dd-676c-4550-8c07-96c21d74fd65.rna_seq.chimeric.gdc_realn.bam 120992763 BAM chimeric harmonized CPTAC3 a4f023dc-419e-42ed-a513-7c69ee453d66 ca4ac3bd719db98d6aff837c1efdeed7 { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06364.RNA-Seq.genomic.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 2f9c36dd-676c-4550-8c07-96c21d74fd65.rna_seq.genomic.gdc_realn.bam 7738872439 BAM genomic harmonized CPTAC3 01ccc794-5d90-4fb5-b545-3cc168fd9244 822262d209dfa174a69596adfeace4d1 { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06364.RNA-Seq.R1_L001.Tbm C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3941468854 FASTQ R1_L001 unaligned CPTAC3 8d2c68f5-5586-4a61-8ade-0ab1e8ed4aee dcaf4ab825c872381ff275c73ea402f0 { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06364.RNA-Seq.R2_L001.Tbm C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4473539092 FASTQ R2_L001 unaligned CPTAC3 bae466cc-d600-4db8-a4bb-915e6fac032f cf8cafed52e63a567ad7f6430630b71b { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06364.RNA-Seq.transcriptome.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 2f9c36dd-676c-4550-8c07-96c21d74fd65.rna_seq.transcriptome.gdc_realn.bam 7390378333 BAM transcriptome harmonized CPTAC3 7ca095c0-26f9-4110-a977-2c9b4e6bec08 47cf153ad6608b1b426b1474a3dd2eb4 { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06364.RNA-Seq.chimeric.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 80fb10bb-583e-4367-9f18-8a8416141163.rna_seq.chimeric.gdc_realn.bam 120990307 BAM chimeric harmonized CPTAC3 77948801-8269-4c0a-89d3-a7eadd55bc93 6653fcdeebbd772fd274832a451c16c1 { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06364.RNA-Seq.genomic.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 80fb10bb-583e-4367-9f18-8a8416141163.rna_seq.genomic.gdc_realn.bam 7744140655 BAM genomic harmonized CPTAC3 3befe369-969b-4fd4-8002-7aa189f89d63 901d58034c1e378846d1918aa73ae5eb { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06364.RNA-Seq.R1_L001.Tbm C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3941468854 FASTQ R1_L001 unaligned CPTAC3 8d2c68f5-5586-4a61-8ade-0ab1e8ed4aee dcaf4ab825c872381ff275c73ea402f0 { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-06364.RNA-Seq.R2_L001.Tbm C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 210331_UNC32-K00270_0278_AHL3YTBBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4473539092 FASTQ R2_L001 unaligned CPTAC3 bae466cc-d600-4db8-a4bb-915e6fac032f cf8cafed52e63a567ad7f6430630b71b { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-06364.RNA-Seq.transcriptome.Tbm.hg38 C3L-06364 AML RNA-Seq tumor_bone_marrow CPT0345730002 80fb10bb-583e-4367-9f18-8a8416141163.rna_seq.transcriptome.gdc_realn.bam 8510092506 BAM transcriptome harmonized CPTAC3 93b1a0ac-ae22-4d49-9bb4-c3b3860c0c05 a4ed99f767e3350d7370e012e62638f7 { 'aliquot_tag': 'ALQ_43936911', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06364.WGS.Nbc C3L-06364 AML WGS buccal_normal CPT0345690003 CPT0345690003.WholeGenome.RP-2158.bam 55619170776 BAM aligned CPTAC3 c97c6d20-7a47-4ad9-91dd-feb8aa5f128e 451147fbf31f9aab98861ee7f03c4058 { 'aliquot_tag': 'ALQ_b5789283', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06364.WGS.Nbc.hg38 C3L-06364 AML WGS buccal_normal CPT0345690003 9b14a9ae-a157-467e-9dec-3fe18c5de85b_wgs_gdc_realn.bam 164724639010 BAM harmonized CPTAC3 04197309-7cc3-4385-a294-284c8c7e108d e1b301405b272c42f49074b3282f03ae { 'aliquot_tag': 'ALQ_b5789283', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06364.WGS.Tbm C3L-06364 AML WGS tumor_bone_marrow CPT0345720002 CPT0345720002.WholeGenome.RP-2158.bam 56104990151 BAM aligned CPTAC3 2697576c-ea04-464a-b67a-c9a4a815e192 6ef8acd5750d23e739d61eb794f66008 { 'aliquot_tag': 'ALQ_7ef340a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06364.WGS.Tbm.hg38 C3L-06364 AML WGS tumor_bone_marrow CPT0345720002 6ad00ada-9022-47e2-bcc0-6e89ebadd037_wgs_gdc_realn.bam 157591079901 BAM harmonized CPTAC3 d61d96da-f617-4d13-adae-d615f336047c fdb57025282c6e3d4468c541fb3a5243 { 'aliquot_tag': 'ALQ_7ef340a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06364.WXS.Nbc C3L-06364 AML WXS buccal_normal CPT0345690003 CPT0345690003.WholeExome.RP-1303.bam 23109004460 BAM aligned CPTAC3 21ebf814-ea24-49fe-96fb-3e567393d3c7 7c503dd28f46ec3cf3a92269d0a8fdbf { 'aliquot_tag': 'ALQ_b5789283', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06364.WXS.Nbc.hg38 C3L-06364 AML WXS buccal_normal CPT0345690003 9b14a9ae-a157-467e-9dec-3fe18c5de85b_wxs_gdc_realn.bam 32230780864 BAM harmonized CPTAC3 781cad08-5f3f-483a-b56a-0415097dd98e 7847840ddd16d3617515a46a3d254ffa { 'aliquot_tag': 'ALQ_b5789283', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06364.WXS.Tbm C3L-06364 AML WXS tumor_bone_marrow CPT0345720002 CPT0345720002.WholeExome.RP-1303.bam 22350725679 BAM aligned CPTAC3 27ffd892-f056-4e29-bdec-908c4cf746e4 1d78cf0c06a59d68d9a499ca374eb652 { 'aliquot_tag': 'ALQ_7ef340a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06364.WXS.Tbm.hg38 C3L-06364 AML WXS tumor_bone_marrow CPT0345720002 6ad00ada-9022-47e2-bcc0-6e89ebadd037_wxs_gdc_realn.bam 30566871238 BAM harmonized CPTAC3 4ddad72e-d954-4d7d-a59e-20d0ddcbd7f5 5a47228d1a6e5c5ed7bd922f0d2038aa { 'aliquot_tag': 'ALQ_7ef340a1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06367.MethArray.Green.Tbm C3L-06367 AML Methylation Array tumor_bone_marrow CPT0410800002 205555380155_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7964f20a-77f4-41d4-aa4b-5d0c5cb4a69f 4894a21cc7771c258f63901f773f0113 { 'aliquot_tag': 'ALQ_8bdced1e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06367.MethArray.Red.Tbm C3L-06367 AML Methylation Array tumor_bone_marrow CPT0410800002 205555380155_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 72159bbb-4cf6-4d11-afa6-79a588e0a392 623e2a6d8619cb25b3b41976b439bd8c { 'aliquot_tag': 'ALQ_8bdced1e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06367.miRNA-Seq.Tbm C3L-06367 AML miRNA-Seq tumor_bone_marrow CPT0410810002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACGAT_S28_L005_R1_001.unaln.bam 315340165 BAM unaligned CPTAC3 85d9e70e-cebd-402d-8fea-b048242b92cc d0b8ffbe05511c3b9f515a24a0832861 { 'aliquot_tag': 'ALQ_b6bcc4ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06367.RNA-Seq.R1_L001.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4138889339 FASTQ R1_L001 unaligned CPTAC3 9fb2e454-11e7-44fd-97a5-abd68cc50890 55846c6451f92b1aba9189bd815d7705 { 'aliquot_tag': 'ALQ_b6bcc4ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06367.RNA-Seq.R2_L001.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 4468004169 FASTQ R2_L001 unaligned CPTAC3 9ff587b2-7250-4cae-b7f7-6be208c9ae33 a097268f192849724904d6ade5eded45 { 'aliquot_tag': 'ALQ_b6bcc4ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06367.miRNA-Seq.Tbm.hg38 C3L-06367 AML miRNA-Seq tumor_bone_marrow CPT0410810002 d90e8127-5f30-494b-afcb-64958f64cc98_mirnaseq_gdc_realn.bam 330680350 BAM harmonized CPTAC3 75176985-d4b1-41a5-bb18-a366b02db27f 341a2081635ec71688ee156a1198c831 { 'aliquot_tag': 'ALQ_b6bcc4ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06367.RNA-Seq.chimeric.Tbm.hg38 C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 f0eb3e9b-8d63-49b6-bffc-51090e863e28.rna_seq.chimeric.gdc_realn.bam 273932961 BAM chimeric harmonized CPTAC3 6486f27b-4f86-4e7f-a7a3-2b4926f29b10 a598d5d0eb325ac0fde798626e500caf { 'aliquot_tag': 'ALQ_b6bcc4ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06367.RNA-Seq.genomic.Tbm.hg38 C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 f0eb3e9b-8d63-49b6-bffc-51090e863e28.rna_seq.genomic.gdc_realn.bam 9396216656 BAM genomic harmonized CPTAC3 7bf853f8-ccc2-4120-b90b-317bfbeb65ad bf65b55b73fc63a3af1a86dc1f9306fa { 'aliquot_tag': 'ALQ_b6bcc4ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06367.RNA-Seq.R1_L001.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4138889339 FASTQ R1_L001 unaligned CPTAC3 9fb2e454-11e7-44fd-97a5-abd68cc50890 55846c6451f92b1aba9189bd815d7705 { 'aliquot_tag': 'ALQ_b6bcc4ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-06367.RNA-Seq.R2_L001.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 4468004169 FASTQ R2_L001 unaligned CPTAC3 9ff587b2-7250-4cae-b7f7-6be208c9ae33 a097268f192849724904d6ade5eded45 { 'aliquot_tag': 'ALQ_b6bcc4ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-06367.RNA-Seq.transcriptome.Tbm.hg38 C3L-06367 AML RNA-Seq tumor_bone_marrow CPT0410810002 f0eb3e9b-8d63-49b6-bffc-51090e863e28.rna_seq.transcriptome.gdc_realn.bam 8002086940 BAM transcriptome harmonized CPTAC3 7a5e3e6b-ffff-4642-9732-89f4c008a725 aba62f6ab3111edd3fee7f7f67dc1392 { 'aliquot_tag': 'ALQ_b6bcc4ae', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06367.WGS.Nbc C3L-06367 AML WGS buccal_normal CPT0410770001 CPT0410770001.WholeGenome.RP-2158.bam 70332252193 BAM aligned CPTAC3 7a527476-40ff-4e19-b840-d01296c606f2 846fd555ce9920a3102db4ad68a26972 { 'aliquot_tag': 'ALQ_51a3d261', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06367.WGS.Nbc.hg38 C3L-06367 AML WGS buccal_normal CPT0410770001 0190064e-4d63-40c7-819c-93065350c542_wgs_gdc_realn.bam 203628893400 BAM harmonized CPTAC3 d72473d5-e10f-4d2c-967b-af4c443685bd a187d85ecb071caecac48f8c5083db32 { 'aliquot_tag': 'ALQ_51a3d261', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06367.WGS.Tbm C3L-06367 AML WGS tumor_bone_marrow CPT0410800002 CPT0410800002.WholeGenome.RP-2158.bam 57348951676 BAM aligned CPTAC3 1566b940-537d-4efe-91ee-66543cfb56c1 f3126bde2ccef04c96024dee388cef09 { 'aliquot_tag': 'ALQ_8bdced1e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06367.WGS.Tbm.hg38 C3L-06367 AML WGS tumor_bone_marrow CPT0410800002 99b6afa0-9d8a-46f6-8038-5c90c81079a0_wgs_gdc_realn.bam 168586222152 BAM harmonized CPTAC3 4b683e0d-6960-41cb-99c1-ed1ab9efa601 11c565325622546b20e89f13d6a8d8e6 { 'aliquot_tag': 'ALQ_8bdced1e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06367.WXS.Tbm C3L-06367 AML WXS tumor_bone_marrow CPT0410800002 CPT0410800002.WholeExome.RP-1303.bam 17821458501 BAM aligned CPTAC3 8f18a1d8-32c5-4ec1-8e64-f71fa919e4d7 e2281a5f9689cb4e947122b2a8c85822 { 'aliquot_tag': 'ALQ_8bdced1e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06367.WXS.Tbm.hg38 C3L-06367 AML WXS tumor_bone_marrow CPT0410800002 99b6afa0-9d8a-46f6-8038-5c90c81079a0_wxs_gdc_realn.bam 24544292588 BAM harmonized CPTAC3 1a49636a-6a49-406e-8e41-a7c17b19b084 9e0e8462f691eb64e5c15098a31c8439 { 'aliquot_tag': 'ALQ_8bdced1e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06368.MethArray.Green.Tpb C3L-06368 AML Methylation Array tumor_peripheral_blood CPT0410410002 205705520128_R06C01_Grn.idat 13677886 IDAT Green NA CPTAC3 51fdafb1-e612-4aad-9827-910512d68387 6c6e638bb9a946f266fd5f8947429521 { 'aliquot_tag': 'ALQ_c17e04d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06368.MethArray.Red.Tpb C3L-06368 AML Methylation Array tumor_peripheral_blood CPT0410410002 205705520128_R06C01_Red.idat 13677886 IDAT Red NA CPTAC3 de5be602-4db6-4f55-8327-b84108002dad aaf53265efc3bd175dcddba410c8cd56 { 'aliquot_tag': 'ALQ_c17e04d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06368.miRNA-Seq.Tbm C3L-06368 AML miRNA-Seq tumor_bone_marrow CPT0410390002 220125_UNC32-K00270_0311_AHMNYYBBXY_ATGAGC_S43_L003_R1_001.unaln.bam 194735341 BAM unaligned CPTAC3 b1f4e05f-6025-4a3c-8e7b-8178a1fc763b 8b58a5cfaeee08fb791c6d354d0a553e { 'aliquot_tag': 'ALQ_ec0b7fac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06368.RNA-Seq.R1_L005.Tbm C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGAGCGTC-GTCCGTGC_S20_L005_R1_001.fastq.gz 4032905959 FASTQ R1_L005 unaligned CPTAC3 8d70e8fc-2f6a-4da7-8a13-3cb09163563d f2ace103a3847a835121350e659065ef { 'aliquot_tag': 'ALQ_ec0b7fac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06368.RNA-Seq.R2_L005.Tbm C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGAGCGTC-GTCCGTGC_S20_L005_R2_001.fastq.gz 4345871199 FASTQ R2_L005 unaligned CPTAC3 08b3a1d2-9038-4e93-b052-9438bf1ec5cd eef8682bdafdf5c9cc67c32ba9547b1a { 'aliquot_tag': 'ALQ_ec0b7fac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06368.miRNA-Seq.Tbm.hg38 C3L-06368 AML miRNA-Seq tumor_bone_marrow CPT0410390002 34388533-55c7-4511-b90c-ae46f922d89f_mirnaseq_gdc_realn.bam 215482150 BAM harmonized CPTAC3 9ba5b742-39d0-487d-818d-45d243a1d61a 73cf8b1d45fe4d1e5bb4e7d139c068dd { 'aliquot_tag': 'ALQ_ec0b7fac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06368.RNA-Seq.chimeric.Tbm.hg38 C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 4754d053-3db3-46cb-8500-c5b425f7be39.rna_seq.chimeric.gdc_realn.bam 807659166 BAM chimeric harmonized CPTAC3 410c254d-68bc-49e7-bc77-17fede4bbedb e37fd2b0d2c67dc1fdc72588fb1cb01a { 'aliquot_tag': 'ALQ_ec0b7fac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06368.RNA-Seq.genomic.Tbm.hg38 C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 4754d053-3db3-46cb-8500-c5b425f7be39.rna_seq.genomic.gdc_realn.bam 8147258324 BAM genomic harmonized CPTAC3 d83aa4ed-0be6-4aa6-9afe-ca6f13c60cef 80d8b53938bb0cf47d19d366fa77464b { 'aliquot_tag': 'ALQ_ec0b7fac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06368.RNA-Seq.R1_L005.Tbm C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGAGCGTC-GTCCGTGC_S20_L005_R1_001.fastq.gz 4032905959 FASTQ R1_L005 unaligned CPTAC3 8d70e8fc-2f6a-4da7-8a13-3cb09163563d f2ace103a3847a835121350e659065ef { 'aliquot_tag': 'ALQ_ec0b7fac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-06368.RNA-Seq.R2_L005.Tbm C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGAGCGTC-GTCCGTGC_S20_L005_R2_001.fastq.gz 4345871199 FASTQ R2_L005 unaligned CPTAC3 08b3a1d2-9038-4e93-b052-9438bf1ec5cd eef8682bdafdf5c9cc67c32ba9547b1a { 'aliquot_tag': 'ALQ_ec0b7fac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-06368.RNA-Seq.transcriptome.Tbm.hg38 C3L-06368 AML RNA-Seq tumor_bone_marrow CPT0410390002 4754d053-3db3-46cb-8500-c5b425f7be39.rna_seq.transcriptome.gdc_realn.bam 7621681346 BAM transcriptome harmonized CPTAC3 112bc06b-307d-4858-a8cf-c2cd850851a0 3a1d3ff998b3819aa6739054d3e10f2f { 'aliquot_tag': 'ALQ_ec0b7fac', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06368.WGS.Nbc C3L-06368 AML WGS buccal_normal CPT0410360001 CPT0410360001.WholeGenome.RP-2158.bam 48116149732 BAM aligned CPTAC3 20cfe70e-f74a-44be-98fb-10650f5bbc25 65d229cd519bb74e46e19dec40445755 { 'aliquot_tag': 'ALQ_f752b9c7', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06368.WGS.Nbc.hg38 C3L-06368 AML WGS buccal_normal CPT0410360001 6e1ac39e-ec0f-4c96-b490-7efaf7351677_wgs_gdc_realn.bam 141822168429 BAM harmonized CPTAC3 34caf708-795e-4b5b-9aa0-f958cc5dfdb0 aa8e36cc428a58dc58ba222c602338fd { 'aliquot_tag': 'ALQ_f752b9c7', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06368.WGS.Tbm C3L-06368 AML WGS tumor_bone_marrow CPT0410360001 CPT0410360001.WholeGenome.RP-2158.bam 48116149732 BAM aligned CPTAC3 20cfe70e-f74a-44be-98fb-10650f5bbc25 65d229cd519bb74e46e19dec40445755 { 'aliquot_tag': 'ALQ_f752b9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06368.WGS.Tbm.hg38 C3L-06368 AML WGS tumor_bone_marrow CPT0410360001 6e1ac39e-ec0f-4c96-b490-7efaf7351677_wgs_gdc_realn.bam 141822168429 BAM harmonized CPTAC3 34caf708-795e-4b5b-9aa0-f958cc5dfdb0 aa8e36cc428a58dc58ba222c602338fd { 'aliquot_tag': 'ALQ_f752b9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06368.WGS.Tpb C3L-06368 AML WGS tumor_peripheral_blood CPT0410410002 CPT0410410002.WholeGenome.RP-2158.bam 47832096739 BAM aligned CPTAC3 178f44ea-57cf-4254-9d8e-27e8779aa3bb 2c7bde4ecd791172592c9e8651d57944 { 'aliquot_tag': 'ALQ_c17e04d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06368.WGS.Tpb.hg38 C3L-06368 AML WGS tumor_peripheral_blood CPT0410410002 bb9ec808-6239-4353-950e-64991f8acfa6_wgs_gdc_realn.bam 142409916076 BAM harmonized CPTAC3 09a49042-9bfb-4c24-9643-e4c0de3a62d6 ab759607d1e500e074b06c5d1f67c5f4 { 'aliquot_tag': 'ALQ_c17e04d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06368.WXS.Nbc C3L-06368 AML WXS buccal_normal CPT0410360001 CPT0410360001.WholeExome.RP-1303.bam 26741144956 BAM aligned CPTAC3 098dfaad-ee4e-466b-9eb8-2a84b87448de d999251a7c96802fee7562a4099639f6 { 'aliquot_tag': 'ALQ_f752b9c7', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06368.WXS.Nbc.hg38 C3L-06368 AML WXS buccal_normal CPT0410360001 6e1ac39e-ec0f-4c96-b490-7efaf7351677_wxs_gdc_realn.bam 37045085962 BAM harmonized CPTAC3 431be984-ae6d-416d-9841-1b56a4ceeb6f 82d976da9b89640bc1b1e5f70754d678 { 'aliquot_tag': 'ALQ_f752b9c7', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06368.WXS.Tbm C3L-06368 AML WXS tumor_bone_marrow CPT0410360001 CPT0410360001.WholeExome.RP-1303.bam 26741144956 BAM aligned CPTAC3 098dfaad-ee4e-466b-9eb8-2a84b87448de d999251a7c96802fee7562a4099639f6 { 'aliquot_tag': 'ALQ_f752b9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06368.WXS.Tbm.hg38 C3L-06368 AML WXS tumor_bone_marrow CPT0410360001 6e1ac39e-ec0f-4c96-b490-7efaf7351677_wxs_gdc_realn.bam 37045085962 BAM harmonized CPTAC3 431be984-ae6d-416d-9841-1b56a4ceeb6f 82d976da9b89640bc1b1e5f70754d678 { 'aliquot_tag': 'ALQ_f752b9c7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06368.WXS.Tpb C3L-06368 AML WXS tumor_peripheral_blood CPT0410410002 CPT0410410002.WholeExome.RP-1303.bam 23108226840 BAM aligned CPTAC3 f5f139b6-1ad1-4f89-b0f3-6d3ec420c787 4100af9a26238b994c753f4a543bc6a4 { 'aliquot_tag': 'ALQ_c17e04d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06368.WXS.Tpb.hg38 C3L-06368 AML WXS tumor_peripheral_blood CPT0410410002 bb9ec808-6239-4353-950e-64991f8acfa6_wxs_gdc_realn.bam 32288108727 BAM harmonized CPTAC3 4c8d49db-dfe8-477a-b33d-903a587afed1 b276c55b8b29e3c2b608d5eef5b3aef6 { 'aliquot_tag': 'ALQ_c17e04d5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06369.MethArray.Green.Tbm C3L-06369 AML Methylation Array tumor_bone_marrow CPT0413490002 204930640111_R06C01_Grn.idat 13677960 IDAT Green NA CPTAC3 522a2b24-cc1c-443d-9b16-2a220f253e1f 258a2babf8a5a16df95985d21943720e { 'aliquot_tag': 'ALQ_c0e65589', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06369.MethArray.Red.Tbm C3L-06369 AML Methylation Array tumor_bone_marrow CPT0413490002 204930640111_R06C01_Red.idat 13677960 IDAT Red NA CPTAC3 e073afad-a137-4894-bf4a-f9479cb63425 55798a5fc680b56dce0f2fd9047237cc { 'aliquot_tag': 'ALQ_c0e65589', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06369.miRNA-Seq.Tbm C3L-06369 AML miRNA-Seq tumor_bone_marrow CPT0413500002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAGGCG_S30_L005_R1_001.unaln.bam 256246836 BAM unaligned CPTAC3 35fe6185-a3ca-4b08-8bef-bc1cd2c9e803 43428c20c9ac5ca3532f8c614c9a420f { 'aliquot_tag': 'ALQ_6aae45d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06369.miRNA-Seq.Tbm C3L-06369 AML miRNA-Seq tumor_bone_marrow CPT0413500002 210817_UNC31-K00269_0302_AHLCTHBBXY_CAGGCG_S8_L003_R1_001.unaln.bam 178546103 BAM unaligned CPTAC3 2dff295d-0f3c-43e7-a8fb-7754dd89cdeb ef4eeeefd93667c9b1f48761527e9def { 'aliquot_tag': 'ALQ_6aae45d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06369.RNA-Seq.R1_L001.Tbm C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R1_001.fastq.gz 3884976741 FASTQ R1_L001 unaligned CPTAC3 8912632e-66df-420c-9db6-8a5138fffedd 170ab207cb2a517772a3b80b80e2004e { 'aliquot_tag': 'ALQ_6aae45d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06369.RNA-Seq.R2_L001.Tbm C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R2_001.fastq.gz 4137092013 FASTQ R2_L001 unaligned CPTAC3 0d4ca071-c2ec-480b-ac31-4f78236b2d52 b3bfbb83b19434241407f650f16df045 { 'aliquot_tag': 'ALQ_6aae45d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06369.miRNA-Seq.Tbm.hg38 C3L-06369 AML miRNA-Seq tumor_bone_marrow CPT0413500002 2de7aa7a-fec0-4fb2-a267-e21d1c07f937_mirnaseq_gdc_realn.bam 492243280 BAM harmonized CPTAC3 4e5e0167-0700-4c1a-a059-07939f66453b 6f531c0a7250ad33baa772fc8ffa12de { 'aliquot_tag': 'ALQ_6aae45d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06369.RNA-Seq.chimeric.Tbm.hg38 C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 15656c3f-10ee-4c64-a6e5-1c54388210af.rna_seq.chimeric.gdc_realn.bam 171308726 BAM chimeric harmonized CPTAC3 ef4b4d1f-8171-474b-bef1-4601d77ac646 357219ea0156ed99fe904aaf6502f875 { 'aliquot_tag': 'ALQ_6aae45d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06369.RNA-Seq.genomic.Tbm.hg38 C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 15656c3f-10ee-4c64-a6e5-1c54388210af.rna_seq.genomic.gdc_realn.bam 8169511634 BAM genomic harmonized CPTAC3 d04625b0-1734-4b32-a491-4d827683931e 9d71734568ab20197fdfb5ece5fe51d4 { 'aliquot_tag': 'ALQ_6aae45d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06369.RNA-Seq.R1_L001.Tbm C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R1_001.fastq.gz 3884976741 FASTQ R1_L001 unaligned CPTAC3 8912632e-66df-420c-9db6-8a5138fffedd 170ab207cb2a517772a3b80b80e2004e { 'aliquot_tag': 'ALQ_6aae45d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-06369.RNA-Seq.R2_L001.Tbm C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R2_001.fastq.gz 4137092013 FASTQ R2_L001 unaligned CPTAC3 0d4ca071-c2ec-480b-ac31-4f78236b2d52 b3bfbb83b19434241407f650f16df045 { 'aliquot_tag': 'ALQ_6aae45d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-06369.RNA-Seq.transcriptome.Tbm.hg38 C3L-06369 AML RNA-Seq tumor_bone_marrow CPT0413500002 15656c3f-10ee-4c64-a6e5-1c54388210af.rna_seq.transcriptome.gdc_realn.bam 8629812377 BAM transcriptome harmonized CPTAC3 096ade43-5be6-4521-8bc6-a3a4e284702e 7ce57c9c3595bc72ca7fe673715659ed { 'aliquot_tag': 'ALQ_6aae45d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06369.WGS.Nbc C3L-06369 AML WGS buccal_normal CPT0413430001 CPT0413430001.WholeGenome.RP-2158.bam 90358839926 BAM aligned CPTAC3 4b08e6fe-6570-4985-ad1b-4993b6caa2ad 7c0480b4c2ee52b7b8a433343b70ae2a { 'aliquot_tag': 'ALQ_135f1c92', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06369.WGS.Nbc.hg38 C3L-06369 AML WGS buccal_normal CPT0413430001 1082aa55-703a-44cd-b5c1-ef42b3954cd1_wgs_gdc_realn.bam 494553510166 BAM harmonized CPTAC3 d4778278-deab-47c4-8cad-3ad89a813df0 110aaca0b808def1cdd1863aec7b4b39 { 'aliquot_tag': 'ALQ_135f1c92', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06369.WGS.Tbm C3L-06369 AML WGS tumor_bone_marrow CPT0413490002 CPT0413490002.WholeGenome.RP-2158.bam 63096923730 BAM aligned CPTAC3 76d51868-9bc4-4bc0-a627-c844a0da6823 08afcd6e8a7d3c32d8f90e32ef931dda { 'aliquot_tag': 'ALQ_c0e65589', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06369.WGS.Tbm.hg38 C3L-06369 AML WGS tumor_bone_marrow CPT0413490002 12154a7c-6e25-40b7-93b5-1654c581800f_wgs_gdc_realn.bam 177220469953 BAM harmonized CPTAC3 d93cf91b-6505-4604-90a9-1ed7919a25f7 c2ac69aa6a22b98ee45a5b95905fb22e { 'aliquot_tag': 'ALQ_c0e65589', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06369.WXS.Nbc C3L-06369 AML WXS buccal_normal CPT0413430001 CPT0413430001.WholeExome.RP-1303.bam 21323478910 BAM aligned CPTAC3 0d5bd0c8-e049-404f-ad52-37f068846c95 d7ab9af2d1532c6a4d7594c011856a69 { 'aliquot_tag': 'ALQ_135f1c92', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06369.WXS.Nbc.hg38 C3L-06369 AML WXS buccal_normal CPT0413430001 1082aa55-703a-44cd-b5c1-ef42b3954cd1_wxs_gdc_realn.bam 30834556167 BAM harmonized CPTAC3 cfec7a25-deba-47ba-baa1-a98913007129 d9a50acca81e5537b289aaaa459f55ca { 'aliquot_tag': 'ALQ_135f1c92', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06369.WXS.Tbm C3L-06369 AML WXS tumor_bone_marrow CPT0413490002 CPT0413490002.WholeExome.RP-1303.bam 31546652914 BAM aligned CPTAC3 a6e83226-bc0a-4f03-b3bc-62b3929a05b8 92eb1b3a33afdb8bc7de2b2b58fb955c { 'aliquot_tag': 'ALQ_c0e65589', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06369.WXS.Tbm.hg38 C3L-06369 AML WXS tumor_bone_marrow CPT0413490002 12154a7c-6e25-40b7-93b5-1654c581800f_wxs_gdc_realn.bam 43962325870 BAM harmonized CPTAC3 2a646771-d8fc-4833-807f-d3ee0871497a 2bcd1f62fdc3864cc48cc0c5e8c0f100 { 'aliquot_tag': 'ALQ_c0e65589', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06374.MethArray.Green.Tbm C3L-06374 AML Methylation Array tumor_bone_marrow CPT0410490002 205555380130_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 a9fc2d6b-5f31-4ea5-9d1c-3f2874bf414b 83de0b292257a695f19d1694d8ecc9c2 { 'aliquot_tag': 'ALQ_f10e4f14', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06374.MethArray.Red.Tbm C3L-06374 AML Methylation Array tumor_bone_marrow CPT0410490002 205555380130_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 d1c39678-a4e4-4c3c-a0c7-57da3db62f18 9e7fa92560f4afde361bce5573d7bd63 { 'aliquot_tag': 'ALQ_f10e4f14', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06374.miRNA-Seq.Tbm C3L-06374 AML miRNA-Seq tumor_bone_marrow CPT0410500002 210702_UNC32-K00270_0289_AHKJ22BBXY_CAACTA_S26_L005_R1_001.unaln.bam 290243249 BAM unaligned CPTAC3 fefa4d0a-c2a6-4caf-a008-3e4bc479fa4b a72aa2f45ed1e046f2fb705be6b4ed8f { 'aliquot_tag': 'ALQ_3742fec0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06374.RNA-Seq.R1_L002.Tbm C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 210708_UNC32-K00270_0290_BHLLHHBBXY_ACGCACCT-GGTGAAGG_S5_L002_R1_001.fastq.gz 3221254222 FASTQ R1_L002 unaligned CPTAC3 23a53be6-2568-49b6-9e77-cb0f8b763b6f 072da92e00d69c28841df98b01acdbc6 { 'aliquot_tag': 'ALQ_3742fec0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06374.RNA-Seq.R2_L002.Tbm C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 210708_UNC32-K00270_0290_BHLLHHBBXY_ACGCACCT-GGTGAAGG_S5_L002_R2_001.fastq.gz 3406264208 FASTQ R2_L002 unaligned CPTAC3 210f1b92-20ce-4c76-b450-9070622728bd 606f32246f32cd2c48ab0c5373ea1895 { 'aliquot_tag': 'ALQ_3742fec0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06374.miRNA-Seq.Tbm.hg38 C3L-06374 AML miRNA-Seq tumor_bone_marrow CPT0410500002 223ca80a-27ec-4822-9ca4-2ccc964a7db2_mirnaseq_gdc_realn.bam 307626820 BAM harmonized CPTAC3 20e9ca79-b6dd-487c-8ef2-1ba49614f5d4 9e27e22ed921d61561c6a2e508c18ea5 { 'aliquot_tag': 'ALQ_3742fec0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06374.RNA-Seq.chimeric.Tbm.hg38 C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 e691fe5b-3d9e-47bf-9ddd-c593bc2cc93f.rna_seq.chimeric.gdc_realn.bam 164415708 BAM chimeric harmonized CPTAC3 85c96197-b9c4-4026-9f05-f693cdef6ac4 d660d81c7e62c507c25bc416597b9d7a { 'aliquot_tag': 'ALQ_3742fec0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06374.RNA-Seq.genomic.Tbm.hg38 C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 e691fe5b-3d9e-47bf-9ddd-c593bc2cc93f.rna_seq.genomic.gdc_realn.bam 7829029834 BAM genomic harmonized CPTAC3 5c1d1201-f2ce-4c4f-9c91-aa488d405f69 5f86b67b1caf4e151a5acd4a0548146e { 'aliquot_tag': 'ALQ_3742fec0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06374.RNA-Seq.R1_L002.Tbm C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 210708_UNC32-K00270_0290_BHLLHHBBXY_ACGCACCT-GGTGAAGG_S5_L002_R1_001.fastq.gz 3221254222 FASTQ R1_L002 unaligned CPTAC3 23a53be6-2568-49b6-9e77-cb0f8b763b6f 072da92e00d69c28841df98b01acdbc6 { 'aliquot_tag': 'ALQ_3742fec0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-06374.RNA-Seq.R2_L002.Tbm C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 210708_UNC32-K00270_0290_BHLLHHBBXY_ACGCACCT-GGTGAAGG_S5_L002_R2_001.fastq.gz 3406264208 FASTQ R2_L002 unaligned CPTAC3 210f1b92-20ce-4c76-b450-9070622728bd 606f32246f32cd2c48ab0c5373ea1895 { 'aliquot_tag': 'ALQ_3742fec0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-06374.RNA-Seq.transcriptome.Tbm.hg38 C3L-06374 AML RNA-Seq tumor_bone_marrow CPT0410500002 e691fe5b-3d9e-47bf-9ddd-c593bc2cc93f.rna_seq.transcriptome.gdc_realn.bam 6452721731 BAM transcriptome harmonized CPTAC3 97ab067e-3c19-4a8d-9272-0278f4b61c91 a81359e8936e5d5b06b73dce4ce308b6 { 'aliquot_tag': 'ALQ_3742fec0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06374.WGS.Nbc C3L-06374 AML WGS buccal_normal CPT0410460001 CPT0410460001.WholeGenome.RP-2158.bam 63282359480 BAM aligned CPTAC3 472cfeef-4a15-4b7b-9686-9d69d263906e 1aeeec8478925dff873903012d8917ef { 'aliquot_tag': 'ALQ_ea57897f', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06374.WGS.Nbc.hg38 C3L-06374 AML WGS buccal_normal CPT0410460001 2cb5354f-1075-45c3-9267-37753db6669a_wgs_gdc_realn.bam 195481200931 BAM harmonized CPTAC3 1baab9c9-7a4f-40c9-9873-5fa78856e42e d71e2fc2e00ba688f0210c82f92e3a16 { 'aliquot_tag': 'ALQ_ea57897f', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06374.WGS.Tbm C3L-06374 AML WGS tumor_bone_marrow CPT0410490002 CPT0410490002.WholeGenome.RP-2158.bam 49038355116 BAM aligned CPTAC3 577bed74-6195-411f-bf24-480919dfd25f 1ab58596cd4da3be567d8099557ce07c { 'aliquot_tag': 'ALQ_f10e4f14', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06374.WGS.Tbm.hg38 C3L-06374 AML WGS tumor_bone_marrow CPT0410490002 c35ea67c-6c16-44b1-8863-aaeaf66865f5_wgs_gdc_realn.bam 144070968583 BAM harmonized CPTAC3 5a782fa9-d539-48e4-bdea-eee86f280403 16637c53fae8dbc7112f7460cb018366 { 'aliquot_tag': 'ALQ_f10e4f14', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06374.WXS.Nbc C3L-06374 AML WXS buccal_normal CPT0410460001 CPT0410460001.WholeExome.RP-1303.bam 16175292772 BAM aligned CPTAC3 f99875f0-0ec0-4c4c-aadb-fb4c75b3a7ee 06402203eff5e7b0d8ce255fcfc4cfee { 'aliquot_tag': 'ALQ_ea57897f', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06374.WXS.Nbc.hg38 C3L-06374 AML WXS buccal_normal CPT0410460001 2cb5354f-1075-45c3-9267-37753db6669a_wxs_gdc_realn.bam 22379237818 BAM harmonized CPTAC3 91de498d-bc4c-4448-a7ec-eda0c295ee08 8ceffed281e095f0e3bd152f4a06071f { 'aliquot_tag': 'ALQ_ea57897f', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06374.WXS.Tbm C3L-06374 AML WXS tumor_bone_marrow CPT0410490002 CPT0410490002.WholeExome.RP-1303.bam 21485741240 BAM aligned CPTAC3 1d77d4ec-a6be-4ae2-99e8-e5fde773b0eb 4b0743606f7667c3a3b0eaa035455e92 { 'aliquot_tag': 'ALQ_f10e4f14', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06374.WXS.Tbm.hg38 C3L-06374 AML WXS tumor_bone_marrow CPT0410490002 c35ea67c-6c16-44b1-8863-aaeaf66865f5_wxs_gdc_realn.bam 29720041722 BAM harmonized CPTAC3 9904b87f-a661-42a8-ad84-d5d7395609c8 6142f0fc39e63dce5dd96cd5c0165297 { 'aliquot_tag': 'ALQ_f10e4f14', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06386.MethArray.Green.Tbm C3L-06386 AML Methylation Array tumor_bone_marrow CPT0410910002 205987770157_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 663418eb-4f58-43a8-8e91-5cef6f495ee0 2875677fd35d948ab0df55aa376d7f94 { 'aliquot_tag': 'ALQ_7de0170b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06386.MethArray.Red.Tbm C3L-06386 AML Methylation Array tumor_bone_marrow CPT0410910002 205987770157_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 547a1784-0630-4f52-b4b8-c68dfa9be51b 1d4ff71b9635d27ae411dda848cc9fce { 'aliquot_tag': 'ALQ_7de0170b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06386.miRNA-Seq.Tpb C3L-06386 AML miRNA-Seq tumor_peripheral_blood CPT0410940002 220125_UNC32-K00270_0311_AHMNYYBBXY_CGGAAT_S10_L003_R1_001.unaln.bam 264627191 BAM unaligned CPTAC3 db9724a6-3c51-44aa-a1d3-3923f3538b69 a758fadfea7c7667821ef3a459f8a590 { 'aliquot_tag': 'ALQ_b500987b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06386.RNA-Seq.R1_L008.Tpb C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGGCAGAG-AGAATGCC_S29_L008_R1_001.fastq.gz 3700088810 FASTQ R1_L008 unaligned CPTAC3 455d60e4-3183-4728-a235-10f3a9e8adf1 3bde5066fd570fce5aa0d18074bff631 { 'aliquot_tag': 'ALQ_b500987b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06386.RNA-Seq.R2_L008.Tpb C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGGCAGAG-AGAATGCC_S29_L008_R2_001.fastq.gz 4159174920 FASTQ R2_L008 unaligned CPTAC3 6934ddbf-b5e2-4486-8c78-acc7e79ad220 9f3b36271dc8fbdff2e29cd4e075702d { 'aliquot_tag': 'ALQ_b500987b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06386.miRNA-Seq.Tpb.hg38 C3L-06386 AML miRNA-Seq tumor_peripheral_blood CPT0410940002 6461073a-bd3f-4f5e-8b0e-dd076f718a89_mirnaseq_gdc_realn.bam 295263291 BAM harmonized CPTAC3 e572c156-0666-44b7-a291-c2bae03ee386 712e5191ddd5b7d291e75c3e6f038c0e { 'aliquot_tag': 'ALQ_b500987b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06386.RNA-Seq.chimeric.Tpb.hg38 C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 deeae113-2ba6-4cf6-9616-6907544ef5df.rna_seq.chimeric.gdc_realn.bam 508901076 BAM chimeric harmonized CPTAC3 86fc3ce6-7eff-4847-99df-744f9c9941fb 3fe1e4b86a87f59d8ba7496afedb5440 { 'aliquot_tag': 'ALQ_b500987b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06386.RNA-Seq.genomic.Tpb.hg38 C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 deeae113-2ba6-4cf6-9616-6907544ef5df.rna_seq.genomic.gdc_realn.bam 7738238602 BAM genomic harmonized CPTAC3 6b8bd0ad-d2c6-464b-b55d-9e69a7bdf993 ab6932db33b0b041e9564e0dd16fcb90 { 'aliquot_tag': 'ALQ_b500987b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06386.RNA-Seq.R1_L008.Tpb C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGGCAGAG-AGAATGCC_S29_L008_R1_001.fastq.gz 3700088810 FASTQ R1_L008 unaligned CPTAC3 455d60e4-3183-4728-a235-10f3a9e8adf1 3bde5066fd570fce5aa0d18074bff631 { 'aliquot_tag': 'ALQ_b500987b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L008' } +C3L-06386.RNA-Seq.R2_L008.Tpb C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGGCAGAG-AGAATGCC_S29_L008_R2_001.fastq.gz 4159174920 FASTQ R2_L008 unaligned CPTAC3 6934ddbf-b5e2-4486-8c78-acc7e79ad220 9f3b36271dc8fbdff2e29cd4e075702d { 'aliquot_tag': 'ALQ_b500987b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L008' } +C3L-06386.RNA-Seq.transcriptome.Tpb.hg38 C3L-06386 AML RNA-Seq tumor_peripheral_blood CPT0410940002 deeae113-2ba6-4cf6-9616-6907544ef5df.rna_seq.transcriptome.gdc_realn.bam 8401038038 BAM transcriptome harmonized CPTAC3 51d25ba6-46c0-4f81-b89f-51116beed76d b02f50fa91eecac959ce7e5d18e1eb79 { 'aliquot_tag': 'ALQ_b500987b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06386.WGS.Tbm C3L-06386 AML WGS tumor_bone_marrow CPT0410910002 CPT0410910002.WholeGenome.RP-2158.bam 60724679059 BAM aligned CPTAC3 db94e33f-628c-485b-9d68-a032ec9f8645 303c4f9249722ef33a74b8b9c1e61dc1 { 'aliquot_tag': 'ALQ_7de0170b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06386.WGS.Tbm.hg38 C3L-06386 AML WGS tumor_bone_marrow CPT0410910002 e1796217-7456-43a8-b557-a0a63046d0c6_wgs_gdc_realn.bam 179870048993 BAM harmonized CPTAC3 aefacc29-6b93-498b-9181-01aa353cb850 d2860289b2a4eecfa9b302e8464b0886 { 'aliquot_tag': 'ALQ_7de0170b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06386.WXS.Nbc C3L-06386 AML WXS buccal_normal CPT0410880001 CPT0410880001.WholeExome.RP-1303.bam 24541841088 BAM aligned CPTAC3 3e172815-ce0f-4c40-9294-d81ddb72b56a 828bab49374b4aeadcff85adea442406 { 'aliquot_tag': 'ALQ_22a5f765', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06386.WXS.Nbc.hg38 C3L-06386 AML WXS buccal_normal CPT0410880001 c432125d-2453-4449-a6dd-ae35376eb87f_wxs_gdc_realn.bam 34749480704 BAM harmonized CPTAC3 27966373-38a4-4697-8eda-28539d19e5c6 1727d000f969394e9d9037f868a7d107 { 'aliquot_tag': 'ALQ_22a5f765', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06386.WXS.Tbm C3L-06386 AML WXS tumor_bone_marrow CPT0410910002 CPT0410910002.WholeExome.RP-1303.bam 30377003817 BAM aligned CPTAC3 6d231bd0-0b90-45fb-be2e-c250cb554e7c 75c64f3b29c3ec79cd7a50bd96633565 { 'aliquot_tag': 'ALQ_7de0170b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06386.WXS.Tbm.hg38 C3L-06386 AML WXS tumor_bone_marrow CPT0410910002 e1796217-7456-43a8-b557-a0a63046d0c6_wxs_gdc_realn.bam 42237742138 BAM harmonized CPTAC3 73f8f70a-98d4-4df8-89f2-596e281d1dc7 36e60a84e228d0dfe7cc5f2222e85c3e { 'aliquot_tag': 'ALQ_7de0170b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06534.MethArray.Green.Tbm C3L-06534 AML Methylation Array tumor_bone_marrow CPT0357310002 205555380136_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6afaf6c3-283a-4238-96e3-efbfa196ea4f ca475f5a1f5644658b12474b91e8a12c { 'aliquot_tag': 'ALQ_f9f769d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06534.MethArray.Red.Tbm C3L-06534 AML Methylation Array tumor_bone_marrow CPT0357310002 205555380136_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 c8ba1d9e-66d0-4570-a96d-1bf67567e4e4 74e1fdfe870f4c69cfc627d16fee2f9c { 'aliquot_tag': 'ALQ_f9f769d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06534.miRNA-Seq.Tbm C3L-06534 AML miRNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTAGCT_S49_L008_R1_001.unaln.bam 280032746 BAM unaligned CPTAC3 a0f1ca8f-7fb4-4b4b-8a7f-1bd43737e2ad 7e11b732e12156a5cbd301fa63a4a7ad { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06534.miRNA-Seq.Tbm.hg38 C3L-06534 AML miRNA-Seq tumor_bone_marrow CPT0357320002 67f6f645-44b1-4009-bc83-1246e7ce7e8f_mirnaseq_gdc_realn.bam 294963728 BAM harmonized CPTAC3 4602960c-f086-4ee9-afe0-2a4d1f6af971 a7cd0a4d8d7947af0e92825d12f0abf1 { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06534.RNA-Seq.chimeric.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 422d8e93-769b-4475-b04d-350b54d0fda3.rna_seq.chimeric.gdc_realn.bam 85628671 BAM chimeric harmonized CPTAC3 97841651-0305-4a11-b26f-4e0746f8ead6 cf07f49895d88da3b089e75947fe1b04 { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06534.RNA-Seq.genomic.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 422d8e93-769b-4475-b04d-350b54d0fda3.rna_seq.genomic.gdc_realn.bam 9285837280 BAM genomic harmonized CPTAC3 558d48f9-6f4c-41f9-8646-5e91ae983786 b8858fe92107ad1e091c32ef5b1b2231 { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06534.RNA-Seq.R1_L006.Tbm C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC32-K00270_0278_AHL3YTBBXY_GAACCGCG-TGACCTTA_S23_L006_R1_001.fastq.gz 3659338538 FASTQ R1_L006 unaligned CPTAC3 5c9407bd-fb2c-4630-a594-3fe9336a1fdb cb5a5791aaea4db511a4bbc5eb0e1ca1 { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06534.RNA-Seq.R2_L006.Tbm C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC32-K00270_0278_AHL3YTBBXY_GAACCGCG-TGACCTTA_S23_L006_R2_001.fastq.gz 3950808227 FASTQ R2_L006 unaligned CPTAC3 98809bf4-4138-472c-a8ac-931b6daef006 9e3d51463b7eb1995abc0aba7da41d39 { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06534.RNA-Seq.transcriptome.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 422d8e93-769b-4475-b04d-350b54d0fda3.rna_seq.transcriptome.gdc_realn.bam 8504491221 BAM transcriptome harmonized CPTAC3 ef8102a5-a0a9-4ff6-b5ec-46d2d0187e12 7cc3cfc8d408d101e1f018806e87171a { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06534.RNA-Seq.chimeric.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 f6be472f-c528-4112-ac29-66ce0b4dbac0.rna_seq.chimeric.gdc_realn.bam 85631606 BAM chimeric harmonized CPTAC3 655685d3-c81d-40ee-b009-11fcbf2f2322 deac35516aa696c6b7381babd466c3f0 { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06534.RNA-Seq.genomic.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 f6be472f-c528-4112-ac29-66ce0b4dbac0.rna_seq.genomic.gdc_realn.bam 9307738152 BAM genomic harmonized CPTAC3 b773828c-4a01-41d0-8517-f5be2318d319 855437377c21c2e532ad13a8e0b2812f { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06534.RNA-Seq.R1_L006.Tbm C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC32-K00270_0278_AHL3YTBBXY_GAACCGCG-TGACCTTA_S23_L006_R1_001.fastq.gz 3659338538 FASTQ R1_L006 unaligned CPTAC3 5c9407bd-fb2c-4630-a594-3fe9336a1fdb cb5a5791aaea4db511a4bbc5eb0e1ca1 { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-06534.RNA-Seq.R2_L006.Tbm C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 210331_UNC32-K00270_0278_AHL3YTBBXY_GAACCGCG-TGACCTTA_S23_L006_R2_001.fastq.gz 3950808227 FASTQ R2_L006 unaligned CPTAC3 98809bf4-4138-472c-a8ac-931b6daef006 9e3d51463b7eb1995abc0aba7da41d39 { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-06534.RNA-Seq.transcriptome.Tbm.hg38 C3L-06534 AML RNA-Seq tumor_bone_marrow CPT0357320002 f6be472f-c528-4112-ac29-66ce0b4dbac0.rna_seq.transcriptome.gdc_realn.bam 9656059878 BAM transcriptome harmonized CPTAC3 e1630e5d-749e-4fe4-8c10-7df39de4e693 c4b74738ecc729640dcef93736a4334a { 'aliquot_tag': 'ALQ_be571300', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06534.WGS.Tbm C3L-06534 AML WGS tumor_bone_marrow CPT0357310002 CPT0357310002.WholeGenome.RP-2158.bam 53750296037 BAM aligned CPTAC3 5f68c355-8c93-4d53-8508-c01ad7359159 10a2af2f5309a4b665b36b7376a3774e { 'aliquot_tag': 'ALQ_f9f769d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06534.WGS.Tbm.hg38 C3L-06534 AML WGS tumor_bone_marrow CPT0357310002 85fc96f8-1da0-4cc7-a2ee-a4a2b22d9dbd_wgs_gdc_realn.bam 160838961740 BAM harmonized CPTAC3 09add0e5-3e23-400f-83a9-4cb0530fd69a d1e07e6f3128b568c71856eeb1e82b1f { 'aliquot_tag': 'ALQ_f9f769d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06534.WXS.Tbm C3L-06534 AML WXS tumor_bone_marrow CPT0357310002 CPT0357310002.WholeExome.RP-1303.bam 22734389925 BAM aligned CPTAC3 b69d8593-791e-49ea-be41-4c59acdf3201 8cee1e4afee2989c35ddb619c1fa6382 { 'aliquot_tag': 'ALQ_f9f769d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06534.WXS.Tbm.hg38 C3L-06534 AML WXS tumor_bone_marrow CPT0357310002 85fc96f8-1da0-4cc7-a2ee-a4a2b22d9dbd_wxs_gdc_realn.bam 32181243333 BAM harmonized CPTAC3 30238c46-4635-4f2b-a172-aba09fac1872 43abe3d902d15776b71a3c1d53c95517 { 'aliquot_tag': 'ALQ_f9f769d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06536.MethArray.Green.Tbm C3L-06536 AML Methylation Array tumor_bone_marrow CPT0357520002 205555390118_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4095dc5a-17f6-4344-80c9-15782116dd22 11f727449bd1fbce40c0adb46ec55033 { 'aliquot_tag': 'ALQ_680ef01d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06536.MethArray.Red.Tbm C3L-06536 AML Methylation Array tumor_bone_marrow CPT0357520002 205555390118_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 095f7cc1-e2ab-45e5-ab38-eee1efa59222 7b76cbd44c513b93f28f4e6850e8a3a0 { 'aliquot_tag': 'ALQ_680ef01d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06536.miRNA-Seq.Tbm C3L-06536 AML miRNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTATAC_S50_L008_R1_001.unaln.bam 205710341 BAM unaligned CPTAC3 220c605b-1a19-4ac0-96e5-f368b9a3653a fde634bd078d3d506915cab62899dbc4 { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06536.miRNA-Seq.Tbm.hg38 C3L-06536 AML miRNA-Seq tumor_bone_marrow CPT0357530002 b4adf0b5-8a23-420d-9d51-0af7e28a6e38_mirnaseq_gdc_realn.bam 221516565 BAM harmonized CPTAC3 cb883ad8-5e32-4051-87ac-ee5fc30819c0 f5e2d68713c954990029a39e50c3cf13 { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06536.RNA-Seq.chimeric.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 50f5f26d-18df-4828-8894-567462682c05.rna_seq.chimeric.gdc_realn.bam 79899789 BAM chimeric harmonized CPTAC3 30509482-789d-425a-a44e-a5a12903c655 8cc3a15802350817122c7397710e4038 { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06536.RNA-Seq.genomic.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 50f5f26d-18df-4828-8894-567462682c05.rna_seq.genomic.gdc_realn.bam 6438774541 BAM genomic harmonized CPTAC3 203ce439-1d30-4dd8-a7db-1b9da8524f8d 1600a4904db7ad1d8feb6169a063150b { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06536.RNA-Seq.R1_L006.Tbm C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCACCAA-CTAGGCAA_S22_L006_R1_001.fastq.gz 3216958952 FASTQ R1_L006 unaligned CPTAC3 2f8b0a00-f2c6-45b7-a639-638866d2f1df 22ad3c5788cdbb3de82941ed5bfc4880 { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06536.RNA-Seq.R2_L006.Tbm C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCACCAA-CTAGGCAA_S22_L006_R2_001.fastq.gz 3504158568 FASTQ R2_L006 unaligned CPTAC3 57ee0236-540a-4ee1-988d-31a66667aa68 1095fe9da4fa5376a619a94d8212c15a { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06536.RNA-Seq.transcriptome.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 50f5f26d-18df-4828-8894-567462682c05.rna_seq.transcriptome.gdc_realn.bam 8496999108 BAM transcriptome harmonized CPTAC3 1dcc01eb-bfb2-483c-b112-801adbd8abc6 58c3bbd2fb8af591ccbb3f24a21df87a { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06536.RNA-Seq.chimeric.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 00bca6f6-c46b-4bf5-b6e8-46f299eddc87.rna_seq.chimeric.gdc_realn.bam 79895908 BAM chimeric harmonized CPTAC3 4500abf3-82b9-4262-aa6a-f708a4febf6d e60ece5ac1db7cf3fce2cb400e1a7ee1 { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06536.RNA-Seq.genomic.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 00bca6f6-c46b-4bf5-b6e8-46f299eddc87.rna_seq.genomic.gdc_realn.bam 6448098497 BAM genomic harmonized CPTAC3 9c7b4d69-e8c0-4fbb-8aa7-85c14730d5d6 126c464fdf80adf5bc40e4b94dff073b { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06536.RNA-Seq.R1_L006.Tbm C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCACCAA-CTAGGCAA_S22_L006_R1_001.fastq.gz 3216958952 FASTQ R1_L006 unaligned CPTAC3 2f8b0a00-f2c6-45b7-a639-638866d2f1df 22ad3c5788cdbb3de82941ed5bfc4880 { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-06536.RNA-Seq.R2_L006.Tbm C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCACCAA-CTAGGCAA_S22_L006_R2_001.fastq.gz 3504158568 FASTQ R2_L006 unaligned CPTAC3 57ee0236-540a-4ee1-988d-31a66667aa68 1095fe9da4fa5376a619a94d8212c15a { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-06536.RNA-Seq.transcriptome.Tbm.hg38 C3L-06536 AML RNA-Seq tumor_bone_marrow CPT0357530002 00bca6f6-c46b-4bf5-b6e8-46f299eddc87.rna_seq.transcriptome.gdc_realn.bam 9774112709 BAM transcriptome harmonized CPTAC3 d5ea0534-0d1a-4f91-9f32-0fb7562e9269 d53dfa2bf4f5e9eb45fc38329080aeec { 'aliquot_tag': 'ALQ_556ed9ad', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06536.WGS.Nbc C3L-06536 AML WGS buccal_normal CPT0357490003 CPT0357490003.WholeGenome.RP-2158.bam 38595068533 BAM aligned CPTAC3 965bd8f8-64ed-4823-9ee7-80134f7c937d c69a121fe59be9f34b4da5c4a2416f2f { 'aliquot_tag': 'ALQ_a385223f', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06536.WGS.Nbc.hg38 C3L-06536 AML WGS buccal_normal CPT0357490003 b5886ef8-aaae-46f8-9765-0aa2e77030ca_wgs_gdc_realn.bam 124125820790 BAM harmonized CPTAC3 d3eb1159-4ed5-4b4b-afc7-3121c141a45f 2747a94556661f7205e3634d6f7ad211 { 'aliquot_tag': 'ALQ_a385223f', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06536.WGS.Tbm C3L-06536 AML WGS tumor_bone_marrow CPT0357520002 CPT0357520002.WholeGenome.RP-2158.bam 45366010648 BAM aligned CPTAC3 6fef3dbc-be48-464d-8939-75bb841f4559 ff679e73639ab3c428e70d54a73096c4 { 'aliquot_tag': 'ALQ_680ef01d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06536.WGS.Tbm.hg38 C3L-06536 AML WGS tumor_bone_marrow CPT0357520002 e5315cdd-85a2-425b-a51a-52ed0cbc72f3_wgs_gdc_realn.bam 136256114453 BAM harmonized CPTAC3 0819a42c-0ec4-4c56-9085-a5cefa866e5c c47d7177c8da4e5c3dbe81ac16702c8c { 'aliquot_tag': 'ALQ_680ef01d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06536.WXS.Tbm C3L-06536 AML WXS tumor_bone_marrow CPT0357520002 CPT0357520002.WholeExome.RP-1303.bam 27270072547 BAM aligned CPTAC3 70a73be2-0f69-4186-a265-f5d2441aff41 15b17281b75febfb25f7271cf3219460 { 'aliquot_tag': 'ALQ_680ef01d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06536.WXS.Tbm.hg38 C3L-06536 AML WXS tumor_bone_marrow CPT0357520002 e5315cdd-85a2-425b-a51a-52ed0cbc72f3_wxs_gdc_realn.bam 38101929396 BAM harmonized CPTAC3 14fea685-7711-45e1-a4b0-462f06a63860 16b428d64c1e6bd7f9ddac8551bc21cf { 'aliquot_tag': 'ALQ_680ef01d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06537.MethArray.Green.Tbm C3L-06537 AML Methylation Array tumor_bone_marrow CPT0357600002 205555390128_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 6dbd8d4d-09cb-4552-af58-798afeb90ac6 d8568cd7d435098ce7d37d092a47719f { 'aliquot_tag': 'ALQ_945ad1d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06537.MethArray.Red.Tbm C3L-06537 AML Methylation Array tumor_bone_marrow CPT0357600002 205555390128_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 6f5c89d7-28e1-497b-8cae-1998f8cede70 adf007a03117ab050254e38ae6c2e892 { 'aliquot_tag': 'ALQ_945ad1d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06537.miRNA-Seq.Tbm C3L-06537 AML miRNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTCAGA_S51_L008_R1_001.unaln.bam 243110226 BAM unaligned CPTAC3 66e5db0d-c4c2-4d9c-a04a-e9e4294c9068 45a48671d1a8317797e86261851e19f0 { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06537.miRNA-Seq.Tbm.hg38 C3L-06537 AML miRNA-Seq tumor_bone_marrow CPT0357610002 24ec0784-5b22-4bb0-9b01-6be10f455729_mirnaseq_gdc_realn.bam 256901843 BAM harmonized CPTAC3 31c070e5-1596-47b1-be93-a699ec366665 49169d3b9a1b171a768d18b6ed50845a { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06537.RNA-Seq.chimeric.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 b41931f8-ebe5-4e78-b144-f64e4d02d562.rna_seq.chimeric.gdc_realn.bam 307732706 BAM chimeric harmonized CPTAC3 28267cf7-86ff-4cf2-8fbe-d1be745b86ba f7f835b81106c7f865939d9a71284411 { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06537.RNA-Seq.genomic.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 b41931f8-ebe5-4e78-b144-f64e4d02d562.rna_seq.genomic.gdc_realn.bam 10321995445 BAM genomic harmonized CPTAC3 f9d8a08c-af73-4c32-aba0-c7c28e31cb46 a8751dce2eab1e626d04c1f8df5d4238 { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06537.RNA-Seq.R1_L006.Tbm C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTGTTGG-TCGAATGG_S24_L006_R1_001.fastq.gz 5177540250 FASTQ R1_L006 unaligned CPTAC3 2129002c-5336-4aae-b19a-72c5e3c4f60b 7457178440554d3e3e74220364a6db7e { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06537.RNA-Seq.R2_L006.Tbm C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTGTTGG-TCGAATGG_S24_L006_R2_001.fastq.gz 5767583082 FASTQ R2_L006 unaligned CPTAC3 8aaf31b8-a585-404c-aefa-a839c42b44b8 d8e0183011ddc25c8ef566d54d47a427 { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06537.RNA-Seq.transcriptome.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 b41931f8-ebe5-4e78-b144-f64e4d02d562.rna_seq.transcriptome.gdc_realn.bam 11358233236 BAM transcriptome harmonized CPTAC3 ede649b3-ed72-4cda-9d32-a2e7ec00cf26 04fb18c48b9eca0967fec2131e2dca60 { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06537.RNA-Seq.chimeric.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 47df096c-60f2-4678-9b4e-3e74c8beb021.rna_seq.chimeric.gdc_realn.bam 307773523 BAM chimeric harmonized CPTAC3 20ed2a26-a874-41a8-b2d1-165583591d6c f24e469693dd21a752eea23d1b11c106 { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06537.RNA-Seq.genomic.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 47df096c-60f2-4678-9b4e-3e74c8beb021.rna_seq.genomic.gdc_realn.bam 10325895462 BAM genomic harmonized CPTAC3 2065bc0b-232d-4535-ad21-dbf6c0db6c03 dc767e4e8afdfdbe6f7ea94176e1ede7 { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06537.RNA-Seq.R1_L006.Tbm C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTGTTGG-TCGAATGG_S24_L006_R1_001.fastq.gz 5177540250 FASTQ R1_L006 unaligned CPTAC3 2129002c-5336-4aae-b19a-72c5e3c4f60b 7457178440554d3e3e74220364a6db7e { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L006' } +C3L-06537.RNA-Seq.R2_L006.Tbm C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTGTTGG-TCGAATGG_S24_L006_R2_001.fastq.gz 5767583082 FASTQ R2_L006 unaligned CPTAC3 8aaf31b8-a585-404c-aefa-a839c42b44b8 d8e0183011ddc25c8ef566d54d47a427 { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L006' } +C3L-06537.RNA-Seq.transcriptome.Tbm.hg38 C3L-06537 AML RNA-Seq tumor_bone_marrow CPT0357610002 47df096c-60f2-4678-9b4e-3e74c8beb021.rna_seq.transcriptome.gdc_realn.bam 12867965818 BAM transcriptome harmonized CPTAC3 34874eb9-d754-4924-ba70-4aaecac46aa1 42a542271101ae2127095e4e01411ddd { 'aliquot_tag': 'ALQ_a93af863', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06537.WGS.Nbc C3L-06537 AML WGS buccal_normal CPT0357570003 CPT0357570003.WholeGenome.RP-2158.bam 53170185799 BAM aligned CPTAC3 c7a19452-d0bd-4113-a350-2aea099c0905 b4f31cf3bffc260ca54eea07e38da87b { 'aliquot_tag': 'ALQ_d7e94ffb', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06537.WGS.Nbc.hg38 C3L-06537 AML WGS buccal_normal CPT0357570003 dd4cee2a-9fbb-40e8-bd02-efcf0b6ef703_wgs_gdc_realn.bam 158430213572 BAM harmonized CPTAC3 64b40dfd-471f-4fa3-bd24-f9ea433e8283 9a56faf5a5941cdb923b4a5cde6d93db { 'aliquot_tag': 'ALQ_d7e94ffb', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06537.WGS.Tbm C3L-06537 AML WGS tumor_bone_marrow CPT0357600002 CPT0357600002.WholeGenome.RP-2158.bam 65633893943 BAM aligned CPTAC3 d76bdcd3-0229-439f-823c-68f2d357b111 834b1ede08be9cd4657ff61156742b82 { 'aliquot_tag': 'ALQ_945ad1d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06537.WGS.Tbm.hg38 C3L-06537 AML WGS tumor_bone_marrow CPT0357600002 e3e078d4-2998-4ded-b84e-9f6f734dde64_wgs_gdc_realn.bam 193442780818 BAM harmonized CPTAC3 047b861d-0027-4d8e-94a9-319d18db7b84 bdf3901945217e83f99fc78d3916e346 { 'aliquot_tag': 'ALQ_945ad1d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06537.WXS.Nbc C3L-06537 AML WXS buccal_normal CPT0357570003 CPT0357570003.WholeExome.RP-1303.bam 20522026084 BAM aligned CPTAC3 c30f388f-a058-402a-a2e7-3b41c92bd564 bf6e76026ed7998f399947d7e4d4da5b { 'aliquot_tag': 'ALQ_d7e94ffb', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06537.WXS.Nbc.hg38 C3L-06537 AML WXS buccal_normal CPT0357570003 dd4cee2a-9fbb-40e8-bd02-efcf0b6ef703_wxs_gdc_realn.bam 28360021924 BAM harmonized CPTAC3 0003d0ca-9bcb-4dab-ad58-eb99f626d24f 2f0b4e7003c739fb41e0884241170ed0 { 'aliquot_tag': 'ALQ_d7e94ffb', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06537.WXS.Tbm C3L-06537 AML WXS tumor_bone_marrow CPT0357600002 CPT0357600002.WholeExome.RP-1303.bam 20157290364 BAM aligned CPTAC3 420a03fc-b71e-4199-90d9-cbd3a7ea598f d3f97bac054e7147c3690e6a96e2d38e { 'aliquot_tag': 'ALQ_945ad1d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06537.WXS.Tbm.hg38 C3L-06537 AML WXS tumor_bone_marrow CPT0357600002 e3e078d4-2998-4ded-b84e-9f6f734dde64_wxs_gdc_realn.bam 27641043839 BAM harmonized CPTAC3 2938b8d2-b043-43cb-a92b-06cb22cdc57c ebea9d39cb106ce2b5661569fdeddfaf { 'aliquot_tag': 'ALQ_945ad1d3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06538.MethArray.Green.Tbm C3L-06538 AML Methylation Array tumor_bone_marrow CPT0357740002 205555380130_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4a78766c-42fe-4614-8c61-5a69665117b2 a87a73d76a5a577012d851d81bd0dc98 { 'aliquot_tag': 'ALQ_aa86a4b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06538.MethArray.Red.Tbm C3L-06538 AML Methylation Array tumor_bone_marrow CPT0357740002 205555380130_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 f1e6878f-0156-488a-881f-27e32879156a 84e8f5d0ae7aab7976938e3274644c59 { 'aliquot_tag': 'ALQ_aa86a4b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06538.miRNA-Seq.Tbm C3L-06538 AML miRNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC31-K00269_0297_AHKCFKBBXY_GACGAC_S52_L008_R1_001.unaln.bam 181417181 BAM unaligned CPTAC3 2011bc05-070a-4543-8d70-4684e9d13cf3 b0c9b2e1c00e2d4fa70b10b1a9f8091d { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06538.miRNA-Seq.Tbm.hg38 C3L-06538 AML miRNA-Seq tumor_bone_marrow CPT0357750002 07543901-ad32-43ab-9a16-3b87b286d262_mirnaseq_gdc_realn.bam 192811006 BAM harmonized CPTAC3 155507e2-bdcf-406b-9371-125f4f9dd331 2c44107fdbfedd999fc104fb28876c52 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06538.RNA-Seq.chimeric.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.chimeric.gdc_realn.bam 124248716 BAM chimeric harmonized CPTAC3 14310681-8a9b-435f-b288-bb4d0bb4a7fe 6f4a1a136494ded8c9148cfa19501aa9 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06538.RNA-Seq.genomic.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.genomic.gdc_realn.bam 8648220570 BAM genomic harmonized CPTAC3 e4f10a0e-386c-4b3c-bc05-8542d189d7f4 8f7f95a3e5e4b285bebc45304b24d424 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06538.RNA-Seq.R1_L005.Tbm C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC32-K00270_0278_AHL3YTBBXY_TATCGCAC-CTTAGTGT_S20_L005_R1_001.fastq.gz 4294397149 FASTQ R1_L005 unaligned CPTAC3 79f72bd1-ecb8-4efb-b830-f14ec5f1360d 33c0b85232c3dac72b74061204856ae2 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06538.RNA-Seq.R2_L005.Tbm C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC32-K00270_0278_AHL3YTBBXY_TATCGCAC-CTTAGTGT_S20_L005_R2_001.fastq.gz 4723013354 FASTQ R2_L005 unaligned CPTAC3 680eb667-6251-4746-b73d-cebe3c1282f9 b2bf9e3aee9f4b6e9898b1080e98c820 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06538.RNA-Seq.transcriptome.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.transcriptome.gdc_realn.bam 10271652180 BAM transcriptome harmonized CPTAC3 e70a8c61-f45e-4794-808f-c825e5ae350a db0bf8385d6dddca89b852e04f348255 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06538.RNA-Seq.chimeric.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.chimeric.gdc_realn.bam 124248716 BAM chimeric harmonized CPTAC3 7f7cbd83-4ade-4bd9-bce6-db3781d2897c 6f4a1a136494ded8c9148cfa19501aa9 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06538.RNA-Seq.genomic.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.genomic.gdc_realn.bam 8648220570 BAM genomic harmonized CPTAC3 59b21a63-9328-491d-b69b-d372e653712e 8f7f95a3e5e4b285bebc45304b24d424 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06538.RNA-Seq.R1_L005.Tbm C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC32-K00270_0278_AHL3YTBBXY_TATCGCAC-CTTAGTGT_S20_L005_R1_001.fastq.gz 4294397149 FASTQ R1_L005 unaligned CPTAC3 79f72bd1-ecb8-4efb-b830-f14ec5f1360d 33c0b85232c3dac72b74061204856ae2 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-06538.RNA-Seq.R2_L005.Tbm C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 210331_UNC32-K00270_0278_AHL3YTBBXY_TATCGCAC-CTTAGTGT_S20_L005_R2_001.fastq.gz 4723013354 FASTQ R2_L005 unaligned CPTAC3 680eb667-6251-4746-b73d-cebe3c1282f9 b2bf9e3aee9f4b6e9898b1080e98c820 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-06538.RNA-Seq.transcriptome.Tbm.hg38 C3L-06538 AML RNA-Seq tumor_bone_marrow CPT0357750002 eb9f9c27-8417-4692-91ab-4d868f085bdb.rna_seq.transcriptome.gdc_realn.bam 10271652180 BAM transcriptome harmonized CPTAC3 0eb97744-49ea-473d-a925-782349f22980 db0bf8385d6dddca89b852e04f348255 { 'aliquot_tag': 'ALQ_97e68d06', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06538.WGS.Tbm C3L-06538 AML WGS tumor_bone_marrow CPT0357740002 CPT0357740002.WholeGenome.RP-2158.bam 56652968810 BAM aligned CPTAC3 21913514-e444-4369-aafb-095e4635643e a8241492a7b029916da1f29249259aa4 { 'aliquot_tag': 'ALQ_aa86a4b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06538.WGS.Tbm.hg38 C3L-06538 AML WGS tumor_bone_marrow CPT0357740002 b4e42d84-7c26-4168-a50d-4fc484c2d5b8_wgs_gdc_realn.bam 161085922717 BAM harmonized CPTAC3 019001be-a94d-4d17-b21e-6bb37f28270d 795e09b7974ec2ac93863a8d43be732b { 'aliquot_tag': 'ALQ_aa86a4b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06538.WXS.Nbc C3L-06538 AML WXS buccal_normal CPT0357710003 CPT0357710003.WholeExome.RP-1303.bam 29015711918 BAM aligned CPTAC3 71eb4838-3584-4fdb-9e69-68fbb9ce0f58 17bc1014d34c6ee589f72c030f250a19 { 'aliquot_tag': 'ALQ_15611b50', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06538.WXS.Nbc.hg38 C3L-06538 AML WXS buccal_normal CPT0357710003 68e81fcd-1c9d-4f62-a6ad-9b624865181c_wxs_gdc_realn.bam 39922875366 BAM harmonized CPTAC3 bc427657-d229-491c-9683-14a1a522b955 2bffd4ab07025dee993849e24a3beb4d { 'aliquot_tag': 'ALQ_15611b50', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06538.WXS.Tbm C3L-06538 AML WXS tumor_bone_marrow CPT0357740002 CPT0357740002.WholeExome.RP-1303.bam 23871267637 BAM aligned CPTAC3 2bcb5508-b0fe-45d5-bf9d-2390572f24f3 158eefbf2eb2028523e6adf9bb6601e4 { 'aliquot_tag': 'ALQ_aa86a4b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06538.WXS.Tbm.hg38 C3L-06538 AML WXS tumor_bone_marrow CPT0357740002 b4e42d84-7c26-4168-a50d-4fc484c2d5b8_wxs_gdc_realn.bam 34029612018 BAM harmonized CPTAC3 8acdf3ea-77e9-446c-9d18-55cbea9f94fc d022ebe143a45c3d2255cb6cee177faa { 'aliquot_tag': 'ALQ_aa86a4b6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06539.MethArray.Green.Tbm C3L-06539 AML Methylation Array tumor_bone_marrow CPT0357830002 205555390119_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 0c490b67-49ae-4016-b6ae-65a83aa52894 846bc21d160d0384ea8885d89ecfa3a2 { 'aliquot_tag': 'ALQ_e9f0ca73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06539.MethArray.Red.Tbm C3L-06539 AML Methylation Array tumor_bone_marrow CPT0357830002 205555390119_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 cd221f3e-c494-433d-afa6-94bd9a4465e6 6d85a31487906caf758789f13ab9b7f7 { 'aliquot_tag': 'ALQ_e9f0ca73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06539.miRNA-Seq.Tbm C3L-06539 AML miRNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC31-K00269_0297_AHKCFKBBXY_TAATCG_S55_L008_R1_001.unaln.bam 321978087 BAM unaligned CPTAC3 f26b1f46-c7e1-458a-b0a7-a36277549c81 683fdf7f75270927957b945ba284975f { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06539.miRNA-Seq.Tbm.hg38 C3L-06539 AML miRNA-Seq tumor_bone_marrow CPT0357840002 3a4a5c39-8e58-4e83-b7da-c9c91598b690_mirnaseq_gdc_realn.bam 336183832 BAM harmonized CPTAC3 307c03fc-a418-416a-9c57-459b75b15c66 244c75857d2957fd94b58793b0cfa669 { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06539.RNA-Seq.chimeric.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 94d23737-7cc3-4f17-82f8-826576dfc52d.rna_seq.chimeric.gdc_realn.bam 108911500 BAM chimeric harmonized CPTAC3 d11f250a-8fa6-466a-910e-8293133dbaf1 0f6397cdd91add442d4787658d7c2251 { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06539.RNA-Seq.genomic.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 94d23737-7cc3-4f17-82f8-826576dfc52d.rna_seq.genomic.gdc_realn.bam 8248355657 BAM genomic harmonized CPTAC3 69ca1bbc-413f-4f8d-993e-dd5204819b4c 471559c490c16e076043d0c6908f856c { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06539.RNA-Seq.R1_L005.Tbm C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGCTATGT-TCCGACAC_S18_L005_R1_001.fastq.gz 4124506299 FASTQ R1_L005 unaligned CPTAC3 3dad273f-fe63-445a-b5d4-68775e31b1ad af044fba3e425eb795551e3278d68bc1 { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06539.RNA-Seq.R2_L005.Tbm C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGCTATGT-TCCGACAC_S18_L005_R2_001.fastq.gz 4580821309 FASTQ R2_L005 unaligned CPTAC3 d7eb624c-5723-4c25-8228-f7cd7a9423c9 df3a764db0ee062fb9a91cbeadcce072 { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06539.RNA-Seq.transcriptome.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 94d23737-7cc3-4f17-82f8-826576dfc52d.rna_seq.transcriptome.gdc_realn.bam 12864160208 BAM transcriptome harmonized CPTAC3 8a62eba8-29dc-4048-a906-4bbafa831464 71f60f065864641d95235c2d09b493e6 { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06539.RNA-Seq.chimeric.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 41d51c52-6f68-473e-8ce2-479c405b7042.rna_seq.chimeric.gdc_realn.bam 108920325 BAM chimeric harmonized CPTAC3 424c8221-c5ed-4e68-a958-88460147dfd2 0b49f4e8b45d72aaf2bb4675b9ecc07e { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06539.RNA-Seq.genomic.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 41d51c52-6f68-473e-8ce2-479c405b7042.rna_seq.genomic.gdc_realn.bam 8259301597 BAM genomic harmonized CPTAC3 28dd782b-f300-47ba-998e-bf798a37f289 682e2efc23c9099b427e042bbfa7c434 { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06539.RNA-Seq.R1_L005.Tbm C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGCTATGT-TCCGACAC_S18_L005_R1_001.fastq.gz 4124506299 FASTQ R1_L005 unaligned CPTAC3 3dad273f-fe63-445a-b5d4-68775e31b1ad af044fba3e425eb795551e3278d68bc1 { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-06539.RNA-Seq.R2_L005.Tbm C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 210331_UNC32-K00270_0278_AHL3YTBBXY_CGCTATGT-TCCGACAC_S18_L005_R2_001.fastq.gz 4580821309 FASTQ R2_L005 unaligned CPTAC3 d7eb624c-5723-4c25-8228-f7cd7a9423c9 df3a764db0ee062fb9a91cbeadcce072 { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-06539.RNA-Seq.transcriptome.Tbm.hg38 C3L-06539 AML RNA-Seq tumor_bone_marrow CPT0357840002 41d51c52-6f68-473e-8ce2-479c405b7042.rna_seq.transcriptome.gdc_realn.bam 14636869814 BAM transcriptome harmonized CPTAC3 e43e5050-8965-4989-8bd3-9f183e94cd24 041afd1a53c30cfcdf152ee514c93f93 { 'aliquot_tag': 'ALQ_5bd01663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06539.WGS.Nbc C3L-06539 AML WGS buccal_normal CPT0357800003 CPT0357800003.WholeGenome.RP-2158.bam 50605679650 BAM aligned CPTAC3 77136785-4819-4027-b1f8-90dd54a5a823 ee223a60c6138f0f4ff3cc0f1fee9c5a { 'aliquot_tag': 'ALQ_d9578035', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06539.WGS.Nbc.hg38 C3L-06539 AML WGS buccal_normal CPT0357800003 e0e01c9d-f823-409e-b875-2d75dc1a577a_wgs_gdc_realn.bam 154159485616 BAM harmonized CPTAC3 472f4c29-feee-4101-9f40-24a10a33bcc3 d0619dab45d78164ab2aae0f242fea1d { 'aliquot_tag': 'ALQ_d9578035', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06539.WGS.Tbm C3L-06539 AML WGS tumor_bone_marrow CPT0357830002 CPT0357830002.WholeGenome.RP-2158.bam 59648893962 BAM aligned CPTAC3 a4210eb4-62bf-4be4-8d98-ca58ad0553bf 09be0ade4bfbd00be204fd5bca98b74a { 'aliquot_tag': 'ALQ_e9f0ca73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06539.WGS.Tbm.hg38 C3L-06539 AML WGS tumor_bone_marrow CPT0357830002 c9f7d842-f01a-4b20-918a-85ca0baa9b60_wgs_gdc_realn.bam 176935203531 BAM harmonized CPTAC3 eb708ee8-4b29-4e9c-b714-fe5c077a60e7 17249f18fe843074d11ed64ebb2d7620 { 'aliquot_tag': 'ALQ_e9f0ca73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06539.WXS.Nbc C3L-06539 AML WXS buccal_normal CPT0357800003 CPT0357800003.WholeExome.RP-1303.bam 27872661700 BAM aligned CPTAC3 20a69353-7124-4b35-b0f7-d29126f520e5 7153e8cc8c5d0f03f188892552a2ddba { 'aliquot_tag': 'ALQ_d9578035', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06539.WXS.Nbc.hg38 C3L-06539 AML WXS buccal_normal CPT0357800003 e0e01c9d-f823-409e-b875-2d75dc1a577a_wxs_gdc_realn.bam 38284612628 BAM harmonized CPTAC3 233aa0b4-a8bc-4fce-9747-82c617215b27 c71529c7286a8e1c7dd0c78f3b091415 { 'aliquot_tag': 'ALQ_d9578035', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06539.WXS.Tbm C3L-06539 AML WXS tumor_bone_marrow CPT0357830002 CPT0357830002.WholeExome.RP-1303.bam 21263665121 BAM aligned CPTAC3 24a320a7-9fef-47e4-9082-c35d5751fa06 5f220383f4d114916e0045232c1a98c3 { 'aliquot_tag': 'ALQ_e9f0ca73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06539.WXS.Tbm.hg38 C3L-06539 AML WXS tumor_bone_marrow CPT0357830002 c9f7d842-f01a-4b20-918a-85ca0baa9b60_wxs_gdc_realn.bam 29737850465 BAM harmonized CPTAC3 a9f44528-f082-421c-a615-9a5c558d6c69 6f8993b3602c3488de323c5464470161 { 'aliquot_tag': 'ALQ_e9f0ca73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06540.MethArray.Green.Tbm C3L-06540 AML Methylation Array tumor_bone_marrow CPT0357910002 205555380155_R03C01_Grn.idat 13677956 IDAT Green NA CPTAC3 da73ccad-3cb9-470b-adaf-31e76c0e11b2 e94b1c7fc0233fb9be5c85b3daf648ad { 'aliquot_tag': 'ALQ_586c4ab6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06540.MethArray.Red.Tbm C3L-06540 AML Methylation Array tumor_bone_marrow CPT0357910002 205555380155_R03C01_Red.idat 13677956 IDAT Red NA CPTAC3 74c866c7-235d-4bb6-9ccd-0a8edfbb7b27 58127a4fb9b7c62904187c87f1cbf68f { 'aliquot_tag': 'ALQ_586c4ab6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06540.miRNA-Seq.Tbm C3L-06540 AML miRNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC31-K00269_0297_AHKCFKBBXY_TACAGC_S26_L007_R1_001.unaln.bam 311359715 BAM unaligned CPTAC3 76a11898-8762-4bd1-bb3c-29a62e136a50 c94a7e567b34901cd47f653f7bcd1a24 { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06540.miRNA-Seq.Tbm.hg38 C3L-06540 AML miRNA-Seq tumor_bone_marrow CPT0357920002 85dc60e9-b46d-4ecb-a2e3-62235ff48021_mirnaseq_gdc_realn.bam 327276933 BAM harmonized CPTAC3 ad084fa7-052b-4ee3-971c-c970c3cdcc86 962c8018e2f0323d85b55c31a39d4cfa { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06540.RNA-Seq.chimeric.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 03de62aa-d86a-49e9-9296-921ea84970ed.rna_seq.chimeric.gdc_realn.bam 53050705 BAM chimeric harmonized CPTAC3 5b662bd8-474e-4b36-babe-30f0b4a6ec44 89ba74b71d7fb7dc6dd0e5ac64314bf6 { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06540.RNA-Seq.genomic.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 03de62aa-d86a-49e9-9296-921ea84970ed.rna_seq.genomic.gdc_realn.bam 7694043821 BAM genomic harmonized CPTAC3 b8fabc3a-6a8a-43fb-97d1-2c5e36bc6e67 69974ba932db00ded4d4d7fa723a867d { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06540.RNA-Seq.R1_L005.Tbm C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC32-K00270_0278_AHL3YTBBXY_GTATGTTC-AACAGGAA_S19_L005_R1_001.fastq.gz 3899033724 FASTQ R1_L005 unaligned CPTAC3 e3dca2c2-f50b-4088-924c-d1006c1c1bc4 4e28c7fe2fd9efc9b005ed4001e041de { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06540.RNA-Seq.R2_L005.Tbm C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC32-K00270_0278_AHL3YTBBXY_GTATGTTC-AACAGGAA_S19_L005_R2_001.fastq.gz 4235744355 FASTQ R2_L005 unaligned CPTAC3 240d81cf-3707-4eac-b01e-c66dd53b52dc a4599bb9f99f778b7bb026d276405c74 { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06540.RNA-Seq.transcriptome.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 03de62aa-d86a-49e9-9296-921ea84970ed.rna_seq.transcriptome.gdc_realn.bam 9727665199 BAM transcriptome harmonized CPTAC3 fcf81836-9218-445c-91c2-e1cf74cb5950 22a6999171ea1f7430248c4f8ba010a0 { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06540.RNA-Seq.chimeric.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 90f464d5-5b19-491f-95ed-4765c3559054.rna_seq.chimeric.gdc_realn.bam 53026256 BAM chimeric harmonized CPTAC3 ed0bd558-3119-42a9-95ac-bcd2dc329756 7689302ffa432146941e26ecec0aeca5 { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06540.RNA-Seq.genomic.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 90f464d5-5b19-491f-95ed-4765c3559054.rna_seq.genomic.gdc_realn.bam 7702628816 BAM genomic harmonized CPTAC3 51297306-22f3-420c-990b-847b0faba61d ca6331f2ae918178cb0e212c2f81fa05 { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06540.RNA-Seq.R1_L005.Tbm C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC32-K00270_0278_AHL3YTBBXY_GTATGTTC-AACAGGAA_S19_L005_R1_001.fastq.gz 3899033724 FASTQ R1_L005 unaligned CPTAC3 e3dca2c2-f50b-4088-924c-d1006c1c1bc4 4e28c7fe2fd9efc9b005ed4001e041de { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-06540.RNA-Seq.R2_L005.Tbm C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 210331_UNC32-K00270_0278_AHL3YTBBXY_GTATGTTC-AACAGGAA_S19_L005_R2_001.fastq.gz 4235744355 FASTQ R2_L005 unaligned CPTAC3 240d81cf-3707-4eac-b01e-c66dd53b52dc a4599bb9f99f778b7bb026d276405c74 { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-06540.RNA-Seq.transcriptome.Tbm.hg38 C3L-06540 AML RNA-Seq tumor_bone_marrow CPT0357920002 90f464d5-5b19-491f-95ed-4765c3559054.rna_seq.transcriptome.gdc_realn.bam 11265263511 BAM transcriptome harmonized CPTAC3 7064de39-d656-46b8-ae76-787462e25709 aec9ff5d6e390d5bc7aab45e4bed1eb6 { 'aliquot_tag': 'ALQ_1fcc3066', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06540.WGS.Nbc C3L-06540 AML WGS buccal_normal CPT0357880003 CPT0357880003.WholeGenome.RP-2158.bam 63113829657 BAM aligned CPTAC3 a3960b51-54b0-4daf-94d6-f22ecbda6535 ee3ef7154576bb16abc85f69e875a446 { 'aliquot_tag': 'ALQ_e927cbf4', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06540.WGS.Nbc.hg38 C3L-06540 AML WGS buccal_normal CPT0357880003 09b7b818-7c8d-41db-b8a2-1b1713603adc_wgs_gdc_realn.bam 185987353424 BAM harmonized CPTAC3 14818528-82a8-4d2c-bf3f-b4eafb4e3c5c 3fbdf9c0b76186a68940752229e7851f { 'aliquot_tag': 'ALQ_e927cbf4', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06540.WGS.Tbm C3L-06540 AML WGS tumor_bone_marrow CPT0357910002 CPT0357910002.WholeGenome.RP-2158.bam 59101287043 BAM aligned CPTAC3 058b59e4-e2b9-4167-924e-ed4f5c8be657 288c9eeed554ab224cbb01b0a529c1b3 { 'aliquot_tag': 'ALQ_586c4ab6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06540.WGS.Tbm.hg38 C3L-06540 AML WGS tumor_bone_marrow CPT0357910002 8398b90d-3648-401d-a664-6a9c44fca60b_wgs_gdc_realn.bam 174412892546 BAM harmonized CPTAC3 6b58e6f7-133e-46d2-a78b-6d28408c9d3a 0efaea94a271e73e5e5e905fc05f242e { 'aliquot_tag': 'ALQ_586c4ab6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06540.WXS.Nbc C3L-06540 AML WXS buccal_normal CPT0357880003 CPT0357880003.WholeExome.RP-1303.bam 21607827917 BAM aligned CPTAC3 faf626de-a4c3-4ca8-b557-5dda9012609c 2f5d0c4ec96313920fbb598e77d0d29b { 'aliquot_tag': 'ALQ_e927cbf4', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06540.WXS.Nbc.hg38 C3L-06540 AML WXS buccal_normal CPT0357880003 09b7b818-7c8d-41db-b8a2-1b1713603adc_wxs_gdc_realn.bam 30002321666 BAM harmonized CPTAC3 7df2ff58-1123-4d05-99b0-93f8348bc66b 2b8cac1776631f253a0f4245e5ce27a6 { 'aliquot_tag': 'ALQ_e927cbf4', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06540.WXS.Tbm C3L-06540 AML WXS tumor_bone_marrow CPT0357910002 CPT0357910002.WholeExome.RP-1303.bam 20816620315 BAM aligned CPTAC3 169af22a-4478-43ec-b79b-867a5dfcbaf7 2bb1974f0ad32d8fb6de54dcd91efad0 { 'aliquot_tag': 'ALQ_586c4ab6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06540.WXS.Tbm.hg38 C3L-06540 AML WXS tumor_bone_marrow CPT0357910002 8398b90d-3648-401d-a664-6a9c44fca60b_wxs_gdc_realn.bam 28716271335 BAM harmonized CPTAC3 c28a8145-36cf-4211-9eec-fcfbac21dcc1 56ca93def48d0d3f17e7702ebb757bab { 'aliquot_tag': 'ALQ_586c4ab6', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06541.MethArray.Green.Tbm C3L-06541 AML Methylation Array tumor_bone_marrow CPT0358050001 204930640111_R04C01_Grn.idat 13677958 IDAT Green NA CPTAC3 3813b0da-228b-492a-ac51-bc5e93f09240 6d324693c977b10987dd42a0213c5c08 { 'aliquot_tag': 'ALQ_e5a29ced', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06541.MethArray.Red.Tbm C3L-06541 AML Methylation Array tumor_bone_marrow CPT0358050001 204930640111_R04C01_Red.idat 13677958 IDAT Red NA CPTAC3 43a551f1-99f7-4415-a944-bac1c9deedde 50eaf593185936331f3e39d12c6e69b6 { 'aliquot_tag': 'ALQ_e5a29ced', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06541.miRNA-Seq.Tbm C3L-06541 AML miRNA-Seq tumor_bone_marrow CPT0358060002 210702_UNC32-K00270_0289_AHKJ22BBXY_TGACCA_S20_L001_R1_001.unaln.bam 243155209 BAM unaligned CPTAC3 26f9f7b4-ab6d-4a0c-b8f5-24daaa06a1a1 09b54a3f1094293a61c7150b2af5cc12 { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06541.RNA-Seq.chimeric.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.chimeric.gdc_realn.bam 50165203 BAM chimeric harmonized CPTAC3 13ef6fa2-a68f-402f-ab1a-26f55cd721b5 da27752e7d9d6d44509008970eeaed5c { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06541.RNA-Seq.genomic.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.genomic.gdc_realn.bam 8047262491 BAM genomic harmonized CPTAC3 11899561-6bc9-40ed-b9dd-55dc9f937e43 543199fefa00fba566aa9b8531eaf3bc { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06541.RNA-Seq.R1_L008.Tbm C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGTGAACC-GCGTTGGA_S64_L008_R1_001.fastq.gz 3742877243 FASTQ R1_L008 unaligned CPTAC3 59d3d48b-d378-408b-9065-b5140f3209e5 fbc7e9e3ee70d34db4a9caa1a2a8d5e0 { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06541.RNA-Seq.R2_L008.Tbm C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGTGAACC-GCGTTGGA_S64_L008_R2_001.fastq.gz 4397325711 FASTQ R2_L008 unaligned CPTAC3 5636c15e-e465-415d-ad12-6e6240adb9e0 8e41d5eafa56dc21b0e7d2c53437037a { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06541.RNA-Seq.transcriptome.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.transcriptome.gdc_realn.bam 8457774850 BAM transcriptome harmonized CPTAC3 811665d4-7783-4752-834e-ac340dd6d799 9078f7b04af58fde5d36a3a5fd0c5834 { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06541.miRNA-Seq.Tbm.hg38 C3L-06541 AML miRNA-Seq tumor_bone_marrow CPT0358060002 971c224d-b392-40f9-bd5e-e36b6a82c440_mirnaseq_gdc_realn.bam 264943276 BAM harmonized CPTAC3 625f22db-bb65-42dd-b39a-c13bfa9f21f4 a7c5462ec88f46273dbbf12fb7c225b2 { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06541.RNA-Seq.chimeric.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.chimeric.gdc_realn.bam 50165203 BAM chimeric harmonized CPTAC3 5dff3a60-1507-4038-8e36-f333afcc4790 da27752e7d9d6d44509008970eeaed5c { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06541.RNA-Seq.genomic.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.genomic.gdc_realn.bam 8047262491 BAM genomic harmonized CPTAC3 169081e7-bf5a-421d-beb5-df4dc4fd8ea6 543199fefa00fba566aa9b8531eaf3bc { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06541.RNA-Seq.R1_L008.Tbm C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGTGAACC-GCGTTGGA_S64_L008_R1_001.fastq.gz 3742877243 FASTQ R1_L008 unaligned CPTAC3 59d3d48b-d378-408b-9065-b5140f3209e5 fbc7e9e3ee70d34db4a9caa1a2a8d5e0 { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L008' } +C3L-06541.RNA-Seq.R2_L008.Tbm C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 210318_UNC32-K00270_0277_AHKNTVBBXY_GGTGAACC-GCGTTGGA_S64_L008_R2_001.fastq.gz 4397325711 FASTQ R2_L008 unaligned CPTAC3 5636c15e-e465-415d-ad12-6e6240adb9e0 8e41d5eafa56dc21b0e7d2c53437037a { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L008' } +C3L-06541.RNA-Seq.transcriptome.Tbm.hg38 C3L-06541 AML RNA-Seq tumor_bone_marrow CPT0358060002 9017c6f8-275b-4772-933a-0f6ceab137bc.rna_seq.transcriptome.gdc_realn.bam 8457774850 BAM transcriptome harmonized CPTAC3 251c1b12-2621-4ba3-8f85-1d1278fca162 9078f7b04af58fde5d36a3a5fd0c5834 { 'aliquot_tag': 'ALQ_3b0bb787', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06541.WGS.Nbc C3L-06541 AML WGS buccal_normal CPT0358030001 CPT0358030001.WholeGenome.RP-2158.bam 48541737139 BAM aligned CPTAC3 2d0020b5-e323-4dd9-882d-5ba6379cdeb5 73c18710e063db2228ad3b35398c89fc { 'aliquot_tag': 'ALQ_6ae2694d', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06541.WGS.Nbc.hg38 C3L-06541 AML WGS buccal_normal CPT0358030001 75b3a564-3ce9-482a-8cd6-034484dd5465_wgs_gdc_realn.bam 150355441830 BAM harmonized CPTAC3 353c9734-73ad-4bed-86b7-524c2d79a4b5 184dcf20f6213ddf61da194d8ccbd105 { 'aliquot_tag': 'ALQ_6ae2694d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06541.WGS.Tbm C3L-06541 AML WGS tumor_bone_marrow CPT0358050001 CPT0358050001.WholeGenome.RP-2158.bam 61518904025 BAM aligned CPTAC3 12f1cfe0-f0c3-4c54-8edd-bb44328c2609 430041d5f31b4b50385d70956be057a1 { 'aliquot_tag': 'ALQ_e5a29ced', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06541.WGS.Tbm.hg38 C3L-06541 AML WGS tumor_bone_marrow CPT0358050001 0356d6af-f2ae-47df-a012-ac06b249fbae_wgs_gdc_realn.bam 110319964037 BAM harmonized CPTAC3 0d821410-5bac-4cc3-acbe-95fcda1364ea f4997590635920f3c1363e5ad007c99a { 'aliquot_tag': 'ALQ_e5a29ced', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06541.WXS.Nbc C3L-06541 AML WXS buccal_normal CPT0358030001 CPT0358030001.WholeExome.RP-1303.bam 17435113533 BAM aligned CPTAC3 bf7fe806-cb3d-41f6-a396-57cb824ec7c3 ad9530e68b8518d370d5ee4ef1b1ca55 { 'aliquot_tag': 'ALQ_6ae2694d', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06541.WXS.Nbc.hg38 C3L-06541 AML WXS buccal_normal CPT0358030001 75b3a564-3ce9-482a-8cd6-034484dd5465_wxs_gdc_realn.bam 24375964003 BAM harmonized CPTAC3 db057121-e94c-4c5c-8c74-c9a5aff26b13 0a72ee084c01ae28bbe66c3f67354f0f { 'aliquot_tag': 'ALQ_6ae2694d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06541.WXS.Tbm C3L-06541 AML WXS tumor_bone_marrow CPT0358050001 CPT0358050001.WholeExome.RP-1303.bam 32199715186 BAM aligned CPTAC3 a19496ef-9892-43b2-bdbc-9ef3858742d2 d3821e0a39e3f30498cdbc78ca8d09dc { 'aliquot_tag': 'ALQ_e5a29ced', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06541.WXS.Tbm.hg38 C3L-06541 AML WXS tumor_bone_marrow CPT0358050001 0356d6af-f2ae-47df-a012-ac06b249fbae_wxs_gdc_realn.bam 43859816354 BAM harmonized CPTAC3 41fa4fe8-db99-499d-958d-1f8ab3d17427 995484a870887d8cf45ddd47e5c7ad0c { 'aliquot_tag': 'ALQ_e5a29ced', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06542.MethArray.Green.Tbm C3L-06542 AML Methylation Array tumor_bone_marrow CPT0358190002 205555380136_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 df50b7a1-e440-428f-8061-0f57b559f295 cb9ae96ef81d3c03b2f45c38ce39ecdf { 'aliquot_tag': 'ALQ_7207f3f3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06542.MethArray.Red.Tbm C3L-06542 AML Methylation Array tumor_bone_marrow CPT0358190002 205555380136_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 2bfa8168-58a9-4ece-aad7-a50c2ed02447 e6c7820a85a4d63fdb6bed142efb233b { 'aliquot_tag': 'ALQ_7207f3f3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06542.miRNA-Seq.Tbm C3L-06542 AML miRNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC31-K00269_0297_AHKCFKBBXY_TATAAT_S28_L007_R1_001.unaln.bam 318543067 BAM unaligned CPTAC3 aa3270a3-05e5-4d18-bdc0-0b386c34315b 2e2ada2b0639524ddef33640f109db45 { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06542.miRNA-Seq.Tbm.hg38 C3L-06542 AML miRNA-Seq tumor_bone_marrow CPT0358200002 e5c854e8-6602-40b3-9d97-695c8d9ce7be_mirnaseq_gdc_realn.bam 336980603 BAM harmonized CPTAC3 708395af-3bcb-4730-8632-0f0d177ae47d 3d37b2a7ca293bb586c7f9cccf51fcf6 { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06542.RNA-Seq.chimeric.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 f9e4d4a1-924f-4c30-b1eb-a9350c391486.rna_seq.chimeric.gdc_realn.bam 138970919 BAM chimeric harmonized CPTAC3 73987b47-18b0-40d2-a7fb-8c7fcd6f3dbb 7fe741a3f1eab2f5ad6c66f731322c84 { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06542.RNA-Seq.genomic.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 f9e4d4a1-924f-4c30-b1eb-a9350c391486.rna_seq.genomic.gdc_realn.bam 7637651699 BAM genomic harmonized CPTAC3 0f6f44e2-2a43-46bf-b635-e960e48e1f81 b82aa13e076fd82334175eadc516ee61 { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06542.RNA-Seq.R1_L005.Tbm C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC32-K00270_0278_AHL3YTBBXY_ACGCACCT-GGTGAAGG_S17_L005_R1_001.fastq.gz 3878804047 FASTQ R1_L005 unaligned CPTAC3 cc62b62f-c0a1-4ebb-bc4a-d2725f1fe8c6 099b7e29dc73bd171cfe0bef08472ede { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06542.RNA-Seq.R2_L005.Tbm C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC32-K00270_0278_AHL3YTBBXY_ACGCACCT-GGTGAAGG_S17_L005_R2_001.fastq.gz 4225174935 FASTQ R2_L005 unaligned CPTAC3 e1b044d8-b032-4630-9797-923d831a9915 5e97d4584614cd93688f75e41bf06e35 { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06542.RNA-Seq.transcriptome.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 f9e4d4a1-924f-4c30-b1eb-a9350c391486.rna_seq.transcriptome.gdc_realn.bam 9649537095 BAM transcriptome harmonized CPTAC3 e566fe01-454f-4dc0-b296-057066fdac8a c07ca682fe1eecf569ec8b0872c1d891 { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06542.RNA-Seq.chimeric.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 bc890e0a-6c10-4274-9460-fd6a1bf1007b.rna_seq.chimeric.gdc_realn.bam 138974763 BAM chimeric harmonized CPTAC3 db048e41-7260-4451-8136-6423a4ecc2d4 3dfb5deed56976866dc8bda5e97c2589 { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06542.RNA-Seq.genomic.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 bc890e0a-6c10-4274-9460-fd6a1bf1007b.rna_seq.genomic.gdc_realn.bam 7645693601 BAM genomic harmonized CPTAC3 56c150c2-4022-4ee9-bf16-5031e0ffec55 27b4db52611264165c99e935687adf45 { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06542.RNA-Seq.R1_L005.Tbm C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC32-K00270_0278_AHL3YTBBXY_ACGCACCT-GGTGAAGG_S17_L005_R1_001.fastq.gz 3878804047 FASTQ R1_L005 unaligned CPTAC3 cc62b62f-c0a1-4ebb-bc4a-d2725f1fe8c6 099b7e29dc73bd171cfe0bef08472ede { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3L-06542.RNA-Seq.R2_L005.Tbm C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 210331_UNC32-K00270_0278_AHL3YTBBXY_ACGCACCT-GGTGAAGG_S17_L005_R2_001.fastq.gz 4225174935 FASTQ R2_L005 unaligned CPTAC3 e1b044d8-b032-4630-9797-923d831a9915 5e97d4584614cd93688f75e41bf06e35 { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3L-06542.RNA-Seq.transcriptome.Tbm.hg38 C3L-06542 AML RNA-Seq tumor_bone_marrow CPT0358200002 bc890e0a-6c10-4274-9460-fd6a1bf1007b.rna_seq.transcriptome.gdc_realn.bam 11163186198 BAM transcriptome harmonized CPTAC3 9ef0e1b2-f521-4fbb-9fe5-88f336c1751b b8b5706105ef333d15f27068c4b428c7 { 'aliquot_tag': 'ALQ_f983e32c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06542.WGS.Nbc C3L-06542 AML WGS buccal_normal CPT0358160002 CPT0358160002.WholeGenome.RP-2158.bam 42404269304 BAM aligned CPTAC3 7d5b0c61-cd58-4573-af63-d1d855ab6d2b 770675054789f9d469ee7940886a0cd2 { 'aliquot_tag': 'ALQ_f0576422', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06542.WGS.Nbc.hg38 C3L-06542 AML WGS buccal_normal CPT0358160002 1a261104-79db-4f51-8a77-42fe4a12dab2_wgs_gdc_realn.bam 125870394775 BAM harmonized CPTAC3 1835d614-9a70-471e-8179-c103234cb687 70b6cba134aecde7dae721a8b62355fc { 'aliquot_tag': 'ALQ_f0576422', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06542.WGS.Tbm C3L-06542 AML WGS tumor_bone_marrow CPT0358190002 CPT0358190002.WholeGenome.RP-2158.bam 53610009979 BAM aligned CPTAC3 b1e71478-1203-4c23-b27f-69dbafd92170 1f7388d528d22713c48c220504874a86 { 'aliquot_tag': 'ALQ_7207f3f3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06542.WGS.Tbm.hg38 C3L-06542 AML WGS tumor_bone_marrow CPT0358190002 6fe2a157-f48e-43fa-806b-4406d5eb94b1_wgs_gdc_realn.bam 153044319610 BAM harmonized CPTAC3 5c5cf68c-fa2b-47ca-968b-88a320d35ac1 71cc653f5d434487442610ec5a95f0ff { 'aliquot_tag': 'ALQ_7207f3f3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06542.WXS.Nbc C3L-06542 AML WXS buccal_normal CPT0358160002 CPT0358160002.WholeExome.RP-1303.bam 29178447279 BAM aligned CPTAC3 8f25df5e-6ab8-4cb8-910c-9c491b659886 e21317f911df88a4f2c210f1d8347d3a { 'aliquot_tag': 'ALQ_f0576422', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06542.WXS.Nbc.hg38 C3L-06542 AML WXS buccal_normal CPT0358160002 1a261104-79db-4f51-8a77-42fe4a12dab2_wxs_gdc_realn.bam 41801479896 BAM harmonized CPTAC3 f706c920-c9fa-47e7-b963-85d22687e70b a8d511dfa5be8d0c716cf724d260990f { 'aliquot_tag': 'ALQ_f0576422', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06542.WXS.Tbm C3L-06542 AML WXS tumor_bone_marrow CPT0358190002 CPT0358190002.WholeExome.RP-1303.bam 21492300088 BAM aligned CPTAC3 b8c89fcb-8db1-4310-8086-d233e51bfc8e b832419abb7fd53f3271219976eb679c { 'aliquot_tag': 'ALQ_7207f3f3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06542.WXS.Tbm.hg38 C3L-06542 AML WXS tumor_bone_marrow CPT0358190002 6fe2a157-f48e-43fa-806b-4406d5eb94b1_wxs_gdc_realn.bam 29783624416 BAM harmonized CPTAC3 b49db584-c2d9-49ac-9738-9c22259e7629 85ca6a1c224b1e9f9e9a8372aae3b6aa { 'aliquot_tag': 'ALQ_7207f3f3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06543.MethArray.Green.Tbm C3L-06543 AML Methylation Array tumor_bone_marrow CPT0358290002 204930640111_R01C01_Grn.idat 13677961 IDAT Green NA CPTAC3 70858a96-b11d-40d3-8db1-8bf077e53e85 64f4261cfea3493ff26bb2771cdc1aef { 'aliquot_tag': 'ALQ_f493815d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06543.MethArray.Red.Tbm C3L-06543 AML Methylation Array tumor_bone_marrow CPT0358290002 204930640111_R01C01_Red.idat 13677961 IDAT Red NA CPTAC3 c035b53a-c69c-470a-a8ed-57e6666a3a72 4dbbe6002d986ec393d9c44177b94c4b { 'aliquot_tag': 'ALQ_f493815d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06543.miRNA-Seq.Tbm C3L-06543 AML miRNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC31-K00269_0297_AHKCFKBBXY_TAGCTT_S27_L007_R1_001.unaln.bam 288903547 BAM unaligned CPTAC3 debca573-607d-463c-b56b-0cc0c3f32ffe 19bb902d3da74eac7f9267a03f550f21 { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06543.miRNA-Seq.Tbm.hg38 C3L-06543 AML miRNA-Seq tumor_bone_marrow CPT0358300002 f102b17c-7746-4c1e-bf39-b513c0f152ba_mirnaseq_gdc_realn.bam 300570662 BAM harmonized CPTAC3 9ad0a819-88e5-429a-a547-2c6b420df5be 42903a3e8cb4966dce38ee43768dc7a6 { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06543.RNA-Seq.chimeric.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 7cee06ad-1d2f-4dc5-8205-d2440078b0a3.rna_seq.chimeric.gdc_realn.bam 90444146 BAM chimeric harmonized CPTAC3 66fafecb-3589-487c-bbee-5c87e36898b2 d36068389f7c29eccbdbb2938fa04448 { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06543.RNA-Seq.genomic.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 7cee06ad-1d2f-4dc5-8205-d2440078b0a3.rna_seq.genomic.gdc_realn.bam 8298692567 BAM genomic harmonized CPTAC3 90346d05-8fbf-41a9-b0d1-3715808f87d0 2f7cf8441fbe69a71b6ac89fb712f80d { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06543.RNA-Seq.R1_L001.Tbm C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC32-K00270_0278_AHL3YTBBXY_GACCTGAA-TTGGTGAG_S3_L001_R1_001.fastq.gz 4115245559 FASTQ R1_L001 unaligned CPTAC3 77523715-551e-4c3b-901b-3fd1c151fe92 d3fb702609844f415383181e441282ef { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06543.RNA-Seq.R2_L001.Tbm C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC32-K00270_0278_AHL3YTBBXY_GACCTGAA-TTGGTGAG_S3_L001_R2_001.fastq.gz 4570631944 FASTQ R2_L001 unaligned CPTAC3 8d808288-6ab7-42a6-9a1a-1d822136964b 589159ba7006e64722960a7f7cace8f2 { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06543.RNA-Seq.transcriptome.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 7cee06ad-1d2f-4dc5-8205-d2440078b0a3.rna_seq.transcriptome.gdc_realn.bam 8070583775 BAM transcriptome harmonized CPTAC3 90066e69-a9b4-402f-8c4b-8dbf02fb232a e1d6932b329234371f5ad9fcfb9069dc { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06543.RNA-Seq.chimeric.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 4daff47d-78d0-4ddb-b4eb-88bd37b8604f.rna_seq.chimeric.gdc_realn.bam 90443077 BAM chimeric harmonized CPTAC3 98389374-1051-4cc4-bda4-9c556d8c19e8 27200ff14466003c509fac646654514a { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06543.RNA-Seq.genomic.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 4daff47d-78d0-4ddb-b4eb-88bd37b8604f.rna_seq.genomic.gdc_realn.bam 8306566715 BAM genomic harmonized CPTAC3 549c5e69-8f7b-479e-bd74-68026c65440b f8f10c606e72d1203e424bd754158366 { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06543.RNA-Seq.R1_L001.Tbm C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC32-K00270_0278_AHL3YTBBXY_GACCTGAA-TTGGTGAG_S3_L001_R1_001.fastq.gz 4115245559 FASTQ R1_L001 unaligned CPTAC3 77523715-551e-4c3b-901b-3fd1c151fe92 d3fb702609844f415383181e441282ef { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-06543.RNA-Seq.R2_L001.Tbm C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 210331_UNC32-K00270_0278_AHL3YTBBXY_GACCTGAA-TTGGTGAG_S3_L001_R2_001.fastq.gz 4570631944 FASTQ R2_L001 unaligned CPTAC3 8d808288-6ab7-42a6-9a1a-1d822136964b 589159ba7006e64722960a7f7cace8f2 { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-06543.RNA-Seq.transcriptome.Tbm.hg38 C3L-06543 AML RNA-Seq tumor_bone_marrow CPT0358300002 4daff47d-78d0-4ddb-b4eb-88bd37b8604f.rna_seq.transcriptome.gdc_realn.bam 9249356567 BAM transcriptome harmonized CPTAC3 0d484508-fc46-47f3-b1da-573276682b43 453f62b2e2d17c3226fb3d7eb26b56fd { 'aliquot_tag': 'ALQ_32df3089', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06543.WGS.Nbc C3L-06543 AML WGS buccal_normal CPT0358260003 CPT0358260003.WholeGenome.RP-2158.bam 54966870388 BAM aligned CPTAC3 9e825789-7131-49b5-a378-cf157eee0ef5 d73aca2e8e6ead00e974f153d7343fbd { 'aliquot_tag': 'ALQ_1c4261a', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06543.WGS.Nbc.hg38 C3L-06543 AML WGS buccal_normal CPT0358260003 e362e60c-2f7f-4aa9-8c80-7a72291d4f23_wgs_gdc_realn.bam 168766002144 BAM harmonized CPTAC3 10a4b333-5ffd-439e-a55a-aa95ac06b469 994bd5085cc9a84f3ba6aa059416ab3f { 'aliquot_tag': 'ALQ_1c4261a', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06543.WGS.Tbm C3L-06543 AML WGS tumor_bone_marrow CPT0358290002 CPT0358290002.WholeGenome.RP-2158.bam 47954298822 BAM aligned CPTAC3 81a839c8-4541-4610-b633-7a1c5f3bc8bc b22b330125cc966d6e506c695d1e474c { 'aliquot_tag': 'ALQ_f493815d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06543.WGS.Tbm.hg38 C3L-06543 AML WGS tumor_bone_marrow CPT0358290002 61f12148-dc2c-46c5-8be4-5c8b16ed62c6_wgs_gdc_realn.bam 141040966682 BAM harmonized CPTAC3 640af29c-4df0-4694-99a3-63b0820bf958 4782f13731c26f34b6358d07479e5d99 { 'aliquot_tag': 'ALQ_f493815d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06543.WXS.Tbm C3L-06543 AML WXS tumor_bone_marrow CPT0358290002 CPT0358290002.WholeExome.RP-1303.bam 22528729323 BAM aligned CPTAC3 452b6f92-bd54-4040-9900-084a810db284 d59aced98cd0b4b9591ee546ea647870 { 'aliquot_tag': 'ALQ_f493815d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06543.WXS.Tbm.hg38 C3L-06543 AML WXS tumor_bone_marrow CPT0358290002 61f12148-dc2c-46c5-8be4-5c8b16ed62c6_wxs_gdc_realn.bam 31717482877 BAM harmonized CPTAC3 2ae62a9d-2a2e-4c17-aa44-d040ec0dba74 b381684a15ec5cc664f2de87b426de3d { 'aliquot_tag': 'ALQ_f493815d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06625.MethArray.Green.T C3L-06625 GBM Methylation Array tumor CPT0406420007 205555390164_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 9a577263-5e14-4507-b83a-2361bb583c50 8cd40b7a810af222d0774df87b902406 { 'aliquot_tag': 'ALQ_59cebf2e', 'gdc_sample_type': 'Primary Tumor' } C3L-06625.MethArray.Red.T C3L-06625 GBM Methylation Array tumor CPT0406420007 205555390164_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 cd82719a-5b88-4984-bb4d-b4a15eda1297 3b42f9614cff6fd83890b260fa3d8936 { 'aliquot_tag': 'ALQ_59cebf2e', 'gdc_sample_type': 'Primary Tumor' } C3L-06625.miRNA-Seq.T C3L-06625 GBM miRNA-Seq tumor CPT0406420010 210702_UNC32-K00270_0289_AHKJ22BBXY_GACGAC_S33_L005_R1_001.unaln.bam 293196759 BAM unaligned CPTAC3 c987ae75-c80b-44e2-be21-841ecc36a725 59ac47e92a05991cd3fa2d28e160ade0 { 'aliquot_tag': 'ALQ_deb11bcc', 'gdc_sample_type': 'Primary Tumor' } -C3L-06625.RNA-Seq.R1_L005.T C3L-06625 GBM RNA-Seq tumor CPT0406420010 210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R1_001.fastq.gz 3568996815 FASTQ R1_L005 unaligned CPTAC3 54aee35f-9cd2-4a3b-9c49-dbffe0677d13 c51f006e65c14b137854421041313d09 { 'aliquot_tag': 'ALQ_deb11bcc', 'gdc_sample_type': 'Primary Tumor' } -C3L-06625.RNA-Seq.R2_L005.T C3L-06625 GBM RNA-Seq tumor CPT0406420010 210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R2_001.fastq.gz 3833373967 FASTQ R2_L005 unaligned CPTAC3 4a16d6ea-281b-440a-9157-095d8785f68a e009c6a419524840cd8ae608c526bef1 { 'aliquot_tag': 'ALQ_deb11bcc', 'gdc_sample_type': 'Primary Tumor' } +C3L-06625.miRNA-Seq.T.hg38 C3L-06625 GBM miRNA-Seq tumor CPT0406420010 6beb2dbc-b5af-4854-815c-36074e5ba4e2_mirnaseq_gdc_realn.bam 319131648 BAM harmonized CPTAC3 bae228f9-a4f6-4720-9b17-5662911b4bce 9276790072afaf454fe0186a986980be { 'aliquot_tag': 'ALQ_deb11bcc', 'gdc_sample_type': 'Primary Tumor' } +C3L-06625.RNA-Seq.chimeric.T.hg38 C3L-06625 GBM RNA-Seq tumor CPT0406420010 9c1e585a-ae7a-42b2-a793-2f73b569bdca.rna_seq.chimeric.gdc_realn.bam 144027014 BAM chimeric harmonized CPTAC3 571e910a-9ee6-4deb-8668-5f7109842a34 b9b65e48f8abe6365c79ff50eb4f471e { 'aliquot_tag': 'ALQ_deb11bcc', 'gdc_sample_type': 'Primary Tumor' } +C3L-06625.RNA-Seq.genomic.T.hg38 C3L-06625 GBM RNA-Seq tumor CPT0406420010 9c1e585a-ae7a-42b2-a793-2f73b569bdca.rna_seq.genomic.gdc_realn.bam 7627098861 BAM genomic harmonized CPTAC3 a26b57c7-8834-4051-86c1-b329c6dbe2fd a15c29fd62fa0555c8606f42891dfa48 { 'aliquot_tag': 'ALQ_deb11bcc', 'gdc_sample_type': 'Primary Tumor' } +C3L-06625.RNA-Seq.R1_L005.T C3L-06625 GBM RNA-Seq tumor CPT0406420010 210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R1_001.fastq.gz 3568996815 FASTQ R1_L005 unaligned CPTAC3 54aee35f-9cd2-4a3b-9c49-dbffe0677d13 c51f006e65c14b137854421041313d09 { 'aliquot_tag': 'ALQ_deb11bcc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3L-06625.RNA-Seq.R2_L005.T C3L-06625 GBM RNA-Seq tumor CPT0406420010 210708_UNC32-K00270_0290_BHLLHHBBXY_ACAGGCGC-CTCTGCCT_S17_L005_R2_001.fastq.gz 3833373967 FASTQ R2_L005 unaligned CPTAC3 4a16d6ea-281b-440a-9157-095d8785f68a e009c6a419524840cd8ae608c526bef1 { 'aliquot_tag': 'ALQ_deb11bcc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3L-06625.RNA-Seq.transcriptome.T.hg38 C3L-06625 GBM RNA-Seq tumor CPT0406420010 9c1e585a-ae7a-42b2-a793-2f73b569bdca.rna_seq.transcriptome.gdc_realn.bam 9445547831 BAM transcriptome harmonized CPTAC3 c6162faa-f678-452c-8c3d-3df865881747 a17a6643e4e5f6d879691fe91e019fa0 { 'aliquot_tag': 'ALQ_deb11bcc', 'gdc_sample_type': 'Primary Tumor' } C3L-06625.WGS.N C3L-06625 GBM WGS blood_normal CPT0405340002 CPT0405340002.WholeGenome.RP-2158.bam 24402990127 BAM aligned CPTAC3 8557dfec-f07f-4653-8321-b7f07f2346f1 04f2c4f563eea3fd8da2cb0c810228ac { 'aliquot_tag': 'ALQ_8a099424', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-06625.WGS.N.hg38 C3L-06625 GBM WGS blood_normal CPT0405340002 ef18d3fb-5d2f-47c9-bcb6-d881d3efb284_wgs_gdc_realn.bam 70804556920 BAM harmonized CPTAC3 9d21e404-4a48-4eb3-8bee-66b811efd37e 99f877e5b2b4b0bcb770b74738d93964 { 'aliquot_tag': 'ALQ_8a099424', 'gdc_sample_type': 'Blood Derived Normal' } C3L-06625.WGS.T C3L-06625 GBM WGS tumor CPT0406420007 CPT0406420007.WholeGenome.RP-2158.bam 26826605690 BAM aligned CPTAC3 eddaab40-a3b4-4285-bef3-e8bc7061f1eb 425f3a4256948608fc7532a6e41f74ec { 'aliquot_tag': 'ALQ_59cebf2e', 'gdc_sample_type': 'Primary Tumor' } +C3L-06625.WGS.T.hg38 C3L-06625 GBM WGS tumor CPT0406420007 41fbd2d6-fccb-42f0-ae30-f26011c2e96e_wgs_gdc_realn.bam 77162667169 BAM harmonized CPTAC3 a7bd7fab-ba0d-43e2-9c92-ebbfb5d94cca e6114d394b6c4fdd8ae51e91348da081 { 'aliquot_tag': 'ALQ_59cebf2e', 'gdc_sample_type': 'Primary Tumor' } C3L-06625.WXS.N C3L-06625 GBM WXS blood_normal CPT0405340002 CPT0405340002.WholeExome.RP-1303.bam 26868199263 BAM aligned CPTAC3 dff80e81-9356-4055-8da6-f47c2c50c4b0 9307746a7c251f14b30c12f324eed9f0 { 'aliquot_tag': 'ALQ_8a099424', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-06625.WXS.N.hg38 C3L-06625 GBM WXS blood_normal CPT0405340002 ef18d3fb-5d2f-47c9-bcb6-d881d3efb284_wxs_gdc_realn.bam 37479287643 BAM harmonized CPTAC3 12c76c83-4c16-4016-8594-e04207caf5e5 4cb124ebccd8b6f4e4db576091fefcf1 { 'aliquot_tag': 'ALQ_8a099424', 'gdc_sample_type': 'Blood Derived Normal' } C3L-06625.WXS.T C3L-06625 GBM WXS tumor CPT0406420007 CPT0406420007.WholeExome.RP-1303.bam 23679098646 BAM aligned CPTAC3 890457f0-bee4-4471-aab4-2343d2d208a9 6f3a7ebac22acfdd7c23ac434b160fe9 { 'aliquot_tag': 'ALQ_59cebf2e', 'gdc_sample_type': 'Primary Tumor' } +C3L-06625.WXS.T.hg38 C3L-06625 GBM WXS tumor CPT0406420007 41fbd2d6-fccb-42f0-ae30-f26011c2e96e_wxs_gdc_realn.bam 32707416253 BAM harmonized CPTAC3 926f6d61-0f53-4923-96cf-73626b0e0fe7 18ec221717fef1fa4068eefa8a88413f { 'aliquot_tag': 'ALQ_59cebf2e', 'gdc_sample_type': 'Primary Tumor' } +C3L-06801.MethArray.Green.Tbm C3L-06801 AML Methylation Array tumor_bone_marrow CPT0423330002 205705520128_R01C01_Grn.idat 13677888 IDAT Green NA CPTAC3 12a60d2f-182b-4cbd-93bf-75957731562a 130c1c5738449f2c5c03e6d1d4349647 { 'aliquot_tag': 'ALQ_19dc7a73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06801.MethArray.Red.Tbm C3L-06801 AML Methylation Array tumor_bone_marrow CPT0423330002 205705520128_R01C01_Red.idat 13677888 IDAT Red NA CPTAC3 3b21f869-af3f-4fcf-ba4e-e44ef358a88b 8ade34335c6249cbec15f3c10c04e546 { 'aliquot_tag': 'ALQ_19dc7a73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06801.miRNA-Seq.Tbm C3L-06801 AML miRNA-Seq tumor_bone_marrow CPT0423340002 220125_UNC32-K00270_0311_AHMNYYBBXY_CCGTCC_S30_L002_R1_001.unaln.bam 197434802 BAM unaligned CPTAC3 8a58be63-7a82-467d-8cc6-e2de62e31624 e1c278ecf3f8ee47fe0402f11a27e0d7 { 'aliquot_tag': 'ALQ_abfca663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06801.RNA-Seq.R1_L003.Tbm C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGTTAGAA-TTCAGGTC_S10_L003_R1_001.fastq.gz 3398816777 FASTQ R1_L003 unaligned CPTAC3 6c26ae3d-a9de-4c8b-aa18-8cfcb7f7e7fe ac4d508b55f026542caac3a16f8c1b94 { 'aliquot_tag': 'ALQ_abfca663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06801.RNA-Seq.R2_L003.Tbm C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGTTAGAA-TTCAGGTC_S10_L003_R2_001.fastq.gz 3657202227 FASTQ R2_L003 unaligned CPTAC3 f66374e3-8299-4707-a67b-3430583f0cf9 ac0b368dba1620170799fe40d7bb36b3 { 'aliquot_tag': 'ALQ_abfca663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06801.miRNA-Seq.Tbm.hg38 C3L-06801 AML miRNA-Seq tumor_bone_marrow CPT0423340002 e71c465e-d8a0-4105-8219-197d77e36f26_mirnaseq_gdc_realn.bam 210256688 BAM harmonized CPTAC3 49def5b0-323f-4af6-9f9a-2b4870addb0f db259b637889b27b00ba1779bcd3c76d { 'aliquot_tag': 'ALQ_abfca663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06801.RNA-Seq.chimeric.Tbm.hg38 C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 cbe277bf-31ac-463d-9ee3-61b0deb1fcf8.rna_seq.chimeric.gdc_realn.bam 465233189 BAM chimeric harmonized CPTAC3 ab1b1c9d-bb0c-420c-8044-372fca6f0deb b6e41293c40ce42995fc21f3fa881fad { 'aliquot_tag': 'ALQ_abfca663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06801.RNA-Seq.genomic.Tbm.hg38 C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 cbe277bf-31ac-463d-9ee3-61b0deb1fcf8.rna_seq.genomic.gdc_realn.bam 7113549492 BAM genomic harmonized CPTAC3 9acc8253-7856-45ec-b0d0-4f159ff28268 9ab9878e3384043a72fc1949bdb15fe0 { 'aliquot_tag': 'ALQ_abfca663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06801.RNA-Seq.R1_L003.Tbm C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGTTAGAA-TTCAGGTC_S10_L003_R1_001.fastq.gz 3398816777 FASTQ R1_L003 unaligned CPTAC3 6c26ae3d-a9de-4c8b-aa18-8cfcb7f7e7fe ac4d508b55f026542caac3a16f8c1b94 { 'aliquot_tag': 'ALQ_abfca663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-06801.RNA-Seq.R2_L003.Tbm C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGTTAGAA-TTCAGGTC_S10_L003_R2_001.fastq.gz 3657202227 FASTQ R2_L003 unaligned CPTAC3 f66374e3-8299-4707-a67b-3430583f0cf9 ac0b368dba1620170799fe40d7bb36b3 { 'aliquot_tag': 'ALQ_abfca663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-06801.RNA-Seq.transcriptome.Tbm.hg38 C3L-06801 AML RNA-Seq tumor_bone_marrow CPT0423340002 cbe277bf-31ac-463d-9ee3-61b0deb1fcf8.rna_seq.transcriptome.gdc_realn.bam 8385537155 BAM transcriptome harmonized CPTAC3 fc3973a3-883c-4f77-a563-6f8d9b73ab2a c7414e1cfe02145f32069111f8f0baf8 { 'aliquot_tag': 'ALQ_abfca663', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06801.WGS.Nbc C3L-06801 AML WGS buccal_normal CPT0423360001 CPT0423360001.WholeGenome.RP-2158.bam 58187396478 BAM aligned CPTAC3 3d14d691-83dd-41b4-b9ce-5986cf29eb7b 849a0e8d3835e782a513faa51b72d290 { 'aliquot_tag': 'ALQ_4835a4b9', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06801.WGS.Nbc.hg38 C3L-06801 AML WGS buccal_normal CPT0423360001 509bac37-703e-4caf-b54e-1e4ed723f5b9_wgs_gdc_realn.bam 175494235031 BAM harmonized CPTAC3 527e15dd-11c6-455b-bf87-8b24bc28b6e1 e248adc830acdf0281593fd16ba4fe26 { 'aliquot_tag': 'ALQ_4835a4b9', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06801.WGS.Tbm C3L-06801 AML WGS tumor_bone_marrow CPT0423330002 CPT0423330002.WholeGenome.RP-2158.bam 50931849564 BAM aligned CPTAC3 fe5cd2cc-5572-438b-ab12-51d013f9ee7d fe98378c2474f6954e36dd70b7cee74e { 'aliquot_tag': 'ALQ_19dc7a73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06801.WGS.Tbm.hg38 C3L-06801 AML WGS tumor_bone_marrow CPT0423330002 0777b76c-fbf2-406f-b010-9a63c2eb65c8_wgs_gdc_realn.bam 151138736406 BAM harmonized CPTAC3 c2325192-7bb3-4f7e-850b-1b1ccb80316b 90d0773bfe99fc272d6518ea1c5cffdd { 'aliquot_tag': 'ALQ_19dc7a73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06801.WXS.Nbc C3L-06801 AML WXS buccal_normal CPT0423360001 CPT0423360001.WholeExome.RP-1303.bam 24060526494 BAM aligned CPTAC3 2c07a6fe-0152-42d8-84bb-8a7edc64705d 68f93feaa2d8d76f943d393d75151ff5 { 'aliquot_tag': 'ALQ_4835a4b9', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06801.WXS.Nbc.hg38 C3L-06801 AML WXS buccal_normal CPT0423360001 509bac37-703e-4caf-b54e-1e4ed723f5b9_wxs_gdc_realn.bam 32920465559 BAM harmonized CPTAC3 3f260eb2-a3a2-4167-864a-494392e107ef eb4fb6584e1a904900b4810e158be48f { 'aliquot_tag': 'ALQ_4835a4b9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06801.WXS.Tbm C3L-06801 AML WXS tumor_bone_marrow CPT0423330002 CPT0423330002.WholeExome.RP-1303.bam 21674632232 BAM aligned CPTAC3 4e7599b9-010e-4e30-981b-3fa9aff70764 c576ee3b6b2c9ca41ccd3a566e2802ba { 'aliquot_tag': 'ALQ_19dc7a73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06801.WXS.Tbm.hg38 C3L-06801 AML WXS tumor_bone_marrow CPT0423330002 0777b76c-fbf2-406f-b010-9a63c2eb65c8_wxs_gdc_realn.bam 30117583893 BAM harmonized CPTAC3 3d2f7892-de16-4f47-b622-ea20a319caa1 b14ad284d04abeff3ad1d8d2ba8adf23 { 'aliquot_tag': 'ALQ_19dc7a73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06803.MethArray.Green.Tbm C3L-06803 AML Methylation Array tumor_bone_marrow CPT0423400002 205705520145_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a234be70-46b6-41f2-b1f4-cc71e2b2ff6e 8e37d5592d45b2364a6245032c181c08 { 'aliquot_tag': 'ALQ_4379301b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06803.MethArray.Red.Tbm C3L-06803 AML Methylation Array tumor_bone_marrow CPT0423400002 205705520145_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 287a4fff-3ec5-499e-ab02-ce3dd6abb21b afda265e248c5b7e384c6f815a476835 { 'aliquot_tag': 'ALQ_4379301b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06803.miRNA-Seq.Tbm C3L-06803 AML miRNA-Seq tumor_bone_marrow CPT0423410002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTAGAG_S37_L002_R1_001.unaln.bam 222419627 BAM unaligned CPTAC3 21a29c76-0835-4600-a4b8-a9116c2000b2 492ee8f82088f94cde0a643b94226552 { 'aliquot_tag': 'ALQ_7e1919ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06803.RNA-Seq.R1_L003.Tbm C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGCCTCAT-AGTAGAGA_S9_L003_R1_001.fastq.gz 3755558642 FASTQ R1_L003 unaligned CPTAC3 aff4657c-1c93-4991-bf9d-102858d36a82 53653c9b8531eb4d5b9f1adf9118b13f { 'aliquot_tag': 'ALQ_7e1919ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06803.RNA-Seq.R2_L003.Tbm C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGCCTCAT-AGTAGAGA_S9_L003_R2_001.fastq.gz 3965110182 FASTQ R2_L003 unaligned CPTAC3 696539ea-5c89-4d92-a676-9753068e6958 72eb660fe328b402e0cbc1bc5cb47fcf { 'aliquot_tag': 'ALQ_7e1919ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06803.miRNA-Seq.Tbm.hg38 C3L-06803 AML miRNA-Seq tumor_bone_marrow CPT0423410002 10291b60-2855-434d-b023-e18f00a28a57_mirnaseq_gdc_realn.bam 236160865 BAM harmonized CPTAC3 33a7f4bc-40b6-451a-a579-7cd3f02896aa b14fd81aef87e35d1fd630df9f0ba7dd { 'aliquot_tag': 'ALQ_7e1919ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06803.RNA-Seq.chimeric.Tbm.hg38 C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 79e36560-2229-4524-a058-a5cbde89c0fe.rna_seq.chimeric.gdc_realn.bam 468880897 BAM chimeric harmonized CPTAC3 f035dc81-abe5-4db3-8ef7-c49500caa2a2 de48b8b97535fc0ad46131de797b3760 { 'aliquot_tag': 'ALQ_7e1919ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06803.RNA-Seq.genomic.Tbm.hg38 C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 79e36560-2229-4524-a058-a5cbde89c0fe.rna_seq.genomic.gdc_realn.bam 7524313192 BAM genomic harmonized CPTAC3 9b5d38df-fe2e-4756-9645-a36ef3e45e95 a42502835cbdbcf0af8b25b37bda3247 { 'aliquot_tag': 'ALQ_7e1919ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06803.RNA-Seq.R1_L003.Tbm C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGCCTCAT-AGTAGAGA_S9_L003_R1_001.fastq.gz 3755558642 FASTQ R1_L003 unaligned CPTAC3 aff4657c-1c93-4991-bf9d-102858d36a82 53653c9b8531eb4d5b9f1adf9118b13f { 'aliquot_tag': 'ALQ_7e1919ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-06803.RNA-Seq.R2_L003.Tbm C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 211207_UNC32-K00270_0306_BHMW5YBBXY_AGCCTCAT-AGTAGAGA_S9_L003_R2_001.fastq.gz 3965110182 FASTQ R2_L003 unaligned CPTAC3 696539ea-5c89-4d92-a676-9753068e6958 72eb660fe328b402e0cbc1bc5cb47fcf { 'aliquot_tag': 'ALQ_7e1919ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-06803.RNA-Seq.transcriptome.Tbm.hg38 C3L-06803 AML RNA-Seq tumor_bone_marrow CPT0423410002 79e36560-2229-4524-a058-a5cbde89c0fe.rna_seq.transcriptome.gdc_realn.bam 9929593111 BAM transcriptome harmonized CPTAC3 3a9d4ebd-f70e-40d5-a262-2b5d84b5ebaf a53077ab55f3dddbba1cf24c5841624c { 'aliquot_tag': 'ALQ_7e1919ab', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06803.WGS.Nbc C3L-06803 AML WGS buccal_normal CPT0423430001 CPT0423430001.WholeGenome.RP-2158.bam 45232516141 BAM aligned CPTAC3 6176d9fe-69f4-4f7a-98ba-da9ccd13dbf4 5a271a4446ecc44cf962988f887e174c { 'aliquot_tag': 'ALQ_9dd01b71', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06803.WGS.Nbc.hg38 C3L-06803 AML WGS buccal_normal CPT0423430001 fb85a170-079b-4546-8d62-d98880d0892a_wgs_gdc_realn.bam 137097285714 BAM harmonized CPTAC3 887b6d76-aeda-4618-b395-4953f9f27201 2cc5c62a6c10b800f5e66e3fb5be3206 { 'aliquot_tag': 'ALQ_9dd01b71', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06803.WGS.Tbm C3L-06803 AML WGS tumor_bone_marrow CPT0423400002 CPT0423400002.WholeGenome.RP-2158.bam 54404756289 BAM aligned CPTAC3 7630eb41-75bf-4708-a031-bf8789837fd3 cf2dc8671b8572cf84e930e0558469b6 { 'aliquot_tag': 'ALQ_4379301b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06803.WGS.Tbm.hg38 C3L-06803 AML WGS tumor_bone_marrow CPT0423400002 ad079273-05c6-4e9e-9c99-c9723ff44b2a_wgs_gdc_realn.bam 161825277408 BAM harmonized CPTAC3 c457f0cc-58e3-4433-b0ac-ffdef5c4a69a cc1c7090606ecac61a089a82210c2209 { 'aliquot_tag': 'ALQ_4379301b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06803.WXS.Nbc C3L-06803 AML WXS buccal_normal CPT0423430001 CPT0423430001.WholeExome.RP-1303.bam 22900150133 BAM aligned CPTAC3 78723427-74a2-41c7-a60e-8af263efb903 5728d5db8d6086b85ef912a6f1c2796e { 'aliquot_tag': 'ALQ_9dd01b71', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06803.WXS.Nbc.hg38 C3L-06803 AML WXS buccal_normal CPT0423430001 fb85a170-079b-4546-8d62-d98880d0892a_wxs_gdc_realn.bam 31737986860 BAM harmonized CPTAC3 5f66e2ee-16bc-449e-af44-0d580e957a50 86aa31b2458f357e3e3c4d873bfbe3dc { 'aliquot_tag': 'ALQ_9dd01b71', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06803.WXS.Tbm C3L-06803 AML WXS tumor_bone_marrow CPT0423400002 CPT0423400002.WholeExome.RP-1303.bam 26183254766 BAM aligned CPTAC3 9535af0b-cec0-4d06-93ba-a8b36985b1b0 60489518be798f1e242ec0a2ea3a9501 { 'aliquot_tag': 'ALQ_4379301b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06803.WXS.Tbm.hg38 C3L-06803 AML WXS tumor_bone_marrow CPT0423400002 ad079273-05c6-4e9e-9c99-c9723ff44b2a_wxs_gdc_realn.bam 36395937526 BAM harmonized CPTAC3 a1e83679-d777-4421-af92-2bc1cf9ae681 a84900ac9c64b0c55820dd776b3ac3cc { 'aliquot_tag': 'ALQ_4379301b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06806.MethArray.Green.Tbm C3L-06806 AML Methylation Array tumor_bone_marrow CPT0394990002 205555390176_R02C01_Grn.idat 13677955 IDAT Green NA CPTAC3 fde29f11-1de4-495c-93da-ae2dcb4bcb75 3b4643ac91b379f7a1561e553a2fcf5d { 'aliquot_tag': 'ALQ_e5b0ea5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06806.MethArray.Red.Tbm C3L-06806 AML Methylation Array tumor_bone_marrow CPT0394990002 205555390176_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 51937697-5728-4e37-98f7-15d1401c29ec 6f1a51e7a2c0b32fd9e4a5ca86426809 { 'aliquot_tag': 'ALQ_e5b0ea5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06806.miRNA-Seq.Tbm C3L-06806 AML miRNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC31-K00269_0297_AHKCFKBBXY_GGCTAC_S25_L007_R1_001.unaln.bam 276008939 BAM unaligned CPTAC3 51ed8f1f-3941-41da-b6ab-073753a7006f 65aab5a3dc1233d5e8985bb0895dd7eb { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06806.miRNA-Seq.Tbm.hg38 C3L-06806 AML miRNA-Seq tumor_bone_marrow CPT0395000002 6e87c1b9-c2fe-481d-9474-e47b4c4605f7_mirnaseq_gdc_realn.bam 297603488 BAM harmonized CPTAC3 fb8cf12b-b42c-4879-97bf-0fa448c1abf5 a5c8296324aabc8063e641f50decb340 { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06806.RNA-Seq.chimeric.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.chimeric.gdc_realn.bam 139385777 BAM chimeric harmonized CPTAC3 c924f327-d41e-4045-955a-f4762a7478dc e0a52e4a9fc6be515ca2ee6ece4f5905 { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06806.RNA-Seq.genomic.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.genomic.gdc_realn.bam 8796614508 BAM genomic harmonized CPTAC3 b0927e99-4cdb-4fdc-ac72-9d45cf5985d3 c0229a1c545e82483b09b8da48b7e508 { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06806.RNA-Seq.R1_L001.Tbm C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTCTACT-CGCGGTTC_S4_L001_R1_001.fastq.gz 4331029607 FASTQ R1_L001 unaligned CPTAC3 f5f11d2f-613f-48f1-ac63-f9064be02cb4 1772b69ed9be8758443dc35a7a1f19a1 { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06806.RNA-Seq.R2_L001.Tbm C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTCTACT-CGCGGTTC_S4_L001_R2_001.fastq.gz 4902540092 FASTQ R2_L001 unaligned CPTAC3 585ffa5e-16be-4a73-b6be-685582e95dc2 f1090b2d4335cd0e32a1d9c4e92ec52c { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06806.RNA-Seq.transcriptome.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.transcriptome.gdc_realn.bam 10773946962 BAM transcriptome harmonized CPTAC3 2318a6e0-025a-454a-a842-4d9df72f6171 db2f8ee158a0ddca82f5e775f07ee10d { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06806.RNA-Seq.chimeric.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.chimeric.gdc_realn.bam 139385777 BAM chimeric harmonized CPTAC3 f2bcda37-08db-4f49-8799-8e68789534f7 e0a52e4a9fc6be515ca2ee6ece4f5905 { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06806.RNA-Seq.genomic.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.genomic.gdc_realn.bam 8796614508 BAM genomic harmonized CPTAC3 31923aa6-86eb-4b44-8306-54ea4f5977d5 c0229a1c545e82483b09b8da48b7e508 { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06806.RNA-Seq.R1_L001.Tbm C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTCTACT-CGCGGTTC_S4_L001_R1_001.fastq.gz 4331029607 FASTQ R1_L001 unaligned CPTAC3 f5f11d2f-613f-48f1-ac63-f9064be02cb4 1772b69ed9be8758443dc35a7a1f19a1 { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-06806.RNA-Seq.R2_L001.Tbm C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 210331_UNC32-K00270_0278_AHL3YTBBXY_TCTCTACT-CGCGGTTC_S4_L001_R2_001.fastq.gz 4902540092 FASTQ R2_L001 unaligned CPTAC3 585ffa5e-16be-4a73-b6be-685582e95dc2 f1090b2d4335cd0e32a1d9c4e92ec52c { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-06806.RNA-Seq.transcriptome.Tbm.hg38 C3L-06806 AML RNA-Seq tumor_bone_marrow CPT0395000002 50238ea5-2837-415e-a468-bc77e152aef2.rna_seq.transcriptome.gdc_realn.bam 10773946962 BAM transcriptome harmonized CPTAC3 5a13bee5-20ec-447b-afa9-40daf6258ad9 db2f8ee158a0ddca82f5e775f07ee10d { 'aliquot_tag': 'ALQ_823336a8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06806.WGS.Nbc C3L-06806 AML WGS buccal_normal CPT0395090002 CPT0395090002.WholeGenome.RP-2158.bam 70305255645 BAM aligned CPTAC3 e7dfb363-efbb-400c-8899-08b6fb28871e 8c8b7472a8999ce42f86e33553fcb830 { 'aliquot_tag': 'ALQ_8f2354d9', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06806.WGS.Nbc.hg38 C3L-06806 AML WGS buccal_normal CPT0395090002 3a30f07b-1d50-4585-832d-9702d446060b_wgs_gdc_realn.bam 204000841502 BAM harmonized CPTAC3 0c557241-6ab1-42cb-b964-30c1cf2c62b2 1dcbfcf440e6dfe86734d654eb74082e { 'aliquot_tag': 'ALQ_8f2354d9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06806.WGS.Tbm C3L-06806 AML WGS tumor_bone_marrow CPT0394990002 CPT0394990002.WholeGenome.RP-2158.bam 53220155635 BAM aligned CPTAC3 a1da9905-acf4-4d48-a195-8a6bbfb85b8c 2585eeb36837f7ebcabe8fce15434d52 { 'aliquot_tag': 'ALQ_e5b0ea5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06806.WGS.Tbm.hg38 C3L-06806 AML WGS tumor_bone_marrow CPT0394990002 2db84bd7-0618-44c7-888f-04649732c477_wgs_gdc_realn.bam 150720677216 BAM harmonized CPTAC3 ec74a3e3-fe3d-469a-8b73-96f5f2e1539f 62d192d98b3ce38fab5bb4de5ffb575a { 'aliquot_tag': 'ALQ_e5b0ea5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06806.WXS.Nbc C3L-06806 AML WXS buccal_normal CPT0395090002 CPT0395090002.WholeExome.RP-1303.bam 24819494957 BAM aligned CPTAC3 3c0b8f60-6e11-48d0-b4c4-b63543d9c9da c37b3c7f073d350aee432c07048ff19b { 'aliquot_tag': 'ALQ_8f2354d9', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06806.WXS.Nbc.hg38 C3L-06806 AML WXS buccal_normal CPT0395090002 3a30f07b-1d50-4585-832d-9702d446060b_wxs_gdc_realn.bam 34201681879 BAM harmonized CPTAC3 bf4c8c61-9d59-4a3a-952f-bd5ede4dd1f0 b9fffa000c5e5857bbcfc4c222db3681 { 'aliquot_tag': 'ALQ_8f2354d9', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06806.WXS.Tbm C3L-06806 AML WXS tumor_bone_marrow CPT0394990002 CPT0394990002.WholeExome.RP-1303.bam 21102974928 BAM aligned CPTAC3 cd871dda-f790-4d8a-93f8-8fd0bbddb25b 964c871ce47b807ddcba3665bd1be81b { 'aliquot_tag': 'ALQ_e5b0ea5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06806.WXS.Tbm.hg38 C3L-06806 AML WXS tumor_bone_marrow CPT0394990002 2db84bd7-0618-44c7-888f-04649732c477_wxs_gdc_realn.bam 29155742449 BAM harmonized CPTAC3 dbd8fb1f-b35d-49c0-b88c-1c79f192c8df 792a98a8a6e42d817351c8bb9b82c532 { 'aliquot_tag': 'ALQ_e5b0ea5', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06807.MethArray.Green.Tbm C3L-06807 AML Methylation Array tumor_bone_marrow CPT0395130002 205555380136_R01C01_Grn.idat 13677955 IDAT Green NA CPTAC3 cd9cde37-3b56-4ffe-be2a-565be0acc4ce b36b1e83d7e87bcb2f1b89bf59f2140a { 'aliquot_tag': 'ALQ_ecf9fdd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06807.MethArray.Red.Tbm C3L-06807 AML Methylation Array tumor_bone_marrow CPT0395130002 205555380136_R01C01_Red.idat 13677955 IDAT Red NA CPTAC3 8876c61a-3d01-4c6f-810f-469878076a04 10849ac2956408b085e7990050fd5719 { 'aliquot_tag': 'ALQ_ecf9fdd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06807.miRNA-Seq.Tbm C3L-06807 AML miRNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC31-K00269_0297_AHKCFKBBXY_CTTGTA_S22_L007_R1_001.unaln.bam 327432901 BAM unaligned CPTAC3 f4bc6e8e-2d7a-40fa-8359-e68b94dfb704 d203634d37deaab03afe2529f50822ab { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06807.miRNA-Seq.Tbm.hg38 C3L-06807 AML miRNA-Seq tumor_bone_marrow CPT0395140002 96551fae-a02c-4c79-979e-9c2e7c137e14_mirnaseq_gdc_realn.bam 341844415 BAM harmonized CPTAC3 cdb9ec31-b9c2-4e02-9203-c3c1d93fff14 42cb61780a0e3491747e2e0866536aa2 { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06807.RNA-Seq.chimeric.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.chimeric.gdc_realn.bam 88091711 BAM chimeric harmonized CPTAC3 9fd04804-01cc-49e8-b5bc-35d500a60506 5f1ee48e2d988f798ac4a36fbfd341b1 { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06807.RNA-Seq.genomic.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.genomic.gdc_realn.bam 8337747777 BAM genomic harmonized CPTAC3 84085952-aa4f-42fe-87e1-e5efb39d877b 86568583a1e8b1b564b29c64a3772dfe { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06807.RNA-Seq.R1_L001.Tbm C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCTCGTC-TATAACCT_S2_L001_R1_001.fastq.gz 3691170140 FASTQ R1_L001 unaligned CPTAC3 fccb07d3-3428-4b00-ae11-1a0447e36d72 8af97876734e942098ecf4eac3358b86 { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06807.RNA-Seq.R2_L001.Tbm C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCTCGTC-TATAACCT_S2_L001_R2_001.fastq.gz 4227720079 FASTQ R2_L001 unaligned CPTAC3 f7500ab8-09a8-4546-9672-945cb3e59038 e21c09021dcf609de60728e37b99b7f6 { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06807.RNA-Seq.transcriptome.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.transcriptome.gdc_realn.bam 10452764936 BAM transcriptome harmonized CPTAC3 56657bf6-ef8e-4601-abcb-6c9cba7fe5ae a18ce028a2d1fce7b892b3c46e2f359f { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06807.RNA-Seq.chimeric.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.chimeric.gdc_realn.bam 88091711 BAM chimeric harmonized CPTAC3 6248136d-7486-40fe-950d-c1ed520c3b07 5f1ee48e2d988f798ac4a36fbfd341b1 { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06807.RNA-Seq.genomic.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.genomic.gdc_realn.bam 8337747777 BAM genomic harmonized CPTAC3 71f4c878-35cc-4003-96c3-9b30604242b8 86568583a1e8b1b564b29c64a3772dfe { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06807.RNA-Seq.R1_L001.Tbm C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCTCGTC-TATAACCT_S2_L001_R1_001.fastq.gz 3691170140 FASTQ R1_L001 unaligned CPTAC3 fccb07d3-3428-4b00-ae11-1a0447e36d72 8af97876734e942098ecf4eac3358b86 { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-06807.RNA-Seq.R2_L001.Tbm C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 210331_UNC32-K00270_0278_AHL3YTBBXY_CTCTCGTC-TATAACCT_S2_L001_R2_001.fastq.gz 4227720079 FASTQ R2_L001 unaligned CPTAC3 f7500ab8-09a8-4546-9672-945cb3e59038 e21c09021dcf609de60728e37b99b7f6 { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-06807.RNA-Seq.transcriptome.Tbm.hg38 C3L-06807 AML RNA-Seq tumor_bone_marrow CPT0395140002 1171e171-8fea-4d84-bd1f-c7ed907eb773.rna_seq.transcriptome.gdc_realn.bam 10452764936 BAM transcriptome harmonized CPTAC3 e87aab6e-f620-45b9-bbf0-64ddd52e9d70 a18ce028a2d1fce7b892b3c46e2f359f { 'aliquot_tag': 'ALQ_bcef43cd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06807.WGS.Nbc C3L-06807 AML WGS buccal_normal CPT0395180002 CPT0395180002.WholeGenome.RP-2158.bam 54652441435 BAM aligned CPTAC3 ee3e9819-a537-49d6-bede-82bc5bbb9dde 51bed20f3cd4d49c4e8578224fa8ac9f { 'aliquot_tag': 'ALQ_791faecc', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06807.WGS.Nbc.hg38 C3L-06807 AML WGS buccal_normal CPT0395180002 c68a5bcd-cb06-4682-9639-359f86ec9dac_wgs_gdc_realn.bam 165305986166 BAM harmonized CPTAC3 a5e65538-6337-4ca8-80e1-08d7f8916278 cc3bc0a96a01257e41fa0f7f59f01df4 { 'aliquot_tag': 'ALQ_791faecc', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06807.WGS.Tbm C3L-06807 AML WGS tumor_bone_marrow CPT0395130002 CPT0395130002.WholeGenome.RP-2158.bam 50481499338 BAM aligned CPTAC3 6eec7a32-f07c-45ab-9ef8-1f57bf4fd58c 45adac0222e4f18df2ed2ea92192eabe { 'aliquot_tag': 'ALQ_ecf9fdd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06807.WGS.Tbm.hg38 C3L-06807 AML WGS tumor_bone_marrow CPT0395130002 d6eecb2d-e8fe-4865-b47b-2e54cde7b819_wgs_gdc_realn.bam 153701170789 BAM harmonized CPTAC3 532cdf3e-715b-41c7-af0f-e9ff9a4fb643 a8b2d8d05c6da6538f2bf00ef31a8ace { 'aliquot_tag': 'ALQ_ecf9fdd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06807.WXS.Nbc C3L-06807 AML WXS buccal_normal CPT0395180002 CPT0395180002.WholeExome.RP-1303.bam 26877871354 BAM aligned CPTAC3 8cd2af62-e664-46d2-8779-b8544bb11967 4c2e863f349ad92ad9d064dc223e8256 { 'aliquot_tag': 'ALQ_791faecc', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06807.WXS.Nbc.hg38 C3L-06807 AML WXS buccal_normal CPT0395180002 c68a5bcd-cb06-4682-9639-359f86ec9dac_wxs_gdc_realn.bam 37138537545 BAM harmonized CPTAC3 ef32ceab-0642-43ae-a9b2-3267328f1ff9 b822715341a3f419cd3dbff4f91b2ef9 { 'aliquot_tag': 'ALQ_791faecc', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06807.WXS.Tbm C3L-06807 AML WXS tumor_bone_marrow CPT0395130002 CPT0395130002.WholeExome.RP-1303.bam 20504709483 BAM aligned CPTAC3 a5acc15a-ee23-4e0b-80d7-19b38c0c73d3 bfac3b1f88b5e2e9052de10bd50d54b0 { 'aliquot_tag': 'ALQ_ecf9fdd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06807.WXS.Tbm.hg38 C3L-06807 AML WXS tumor_bone_marrow CPT0395130002 d6eecb2d-e8fe-4865-b47b-2e54cde7b819_wxs_gdc_realn.bam 28299634890 BAM harmonized CPTAC3 8a45f79a-4cdb-4c86-91bb-e82d221fb190 6225d5b140f9927d6eab7cc513549b75 { 'aliquot_tag': 'ALQ_ecf9fdd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06809.MethArray.Green.Tbm C3L-06809 AML Methylation Array tumor_bone_marrow CPT0423800002 205705520128_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 94825f27-9b10-43c0-ab4b-a5b28463de6a 03dfc288a40f1a04e8419b14d2af792b { 'aliquot_tag': 'ALQ_34bbf060', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06809.MethArray.Red.Tbm C3L-06809 AML Methylation Array tumor_bone_marrow CPT0423800002 205705520128_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 ccdabe3f-7619-4210-a417-0024b45216ec e672b577a22ba3ac1fd1b831d0062850 { 'aliquot_tag': 'ALQ_34bbf060', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06809.miRNA-Seq.Tbm C3L-06809 AML miRNA-Seq tumor_bone_marrow CPT0423790002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTTTCG_S40_L002_R1_001.unaln.bam 215564046 BAM unaligned CPTAC3 73739b6a-96f9-42d0-a087-8da711422ef7 006977cf7f01eb42434bb97d51434df0 { 'aliquot_tag': 'ALQ_c8fd20c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06809.RNA-Seq.R1_L004.Tbm C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 211207_UNC32-K00270_0306_BHMW5YBBXY_TAAGTGGT-CTTAAGCC_S15_L004_R1_001.fastq.gz 3191057802 FASTQ R1_L004 unaligned CPTAC3 ed6cfd64-6e72-42b6-844e-88234f7dbd0f ae636da75fa1b8ec2ca83a0f54d85e61 { 'aliquot_tag': 'ALQ_c8fd20c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06809.RNA-Seq.R2_L004.Tbm C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 211207_UNC32-K00270_0306_BHMW5YBBXY_TAAGTGGT-CTTAAGCC_S15_L004_R2_001.fastq.gz 3380156902 FASTQ R2_L004 unaligned CPTAC3 fa5593e4-49bc-4567-84aa-3e6ed2214956 92cec9b832440c9f2cd8454ff4289f49 { 'aliquot_tag': 'ALQ_c8fd20c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06809.miRNA-Seq.Tbm.hg38 C3L-06809 AML miRNA-Seq tumor_bone_marrow CPT0423790002 9f2bc07b-5439-4d0a-b880-b4dac65a5f75_mirnaseq_gdc_realn.bam 236354089 BAM harmonized CPTAC3 2017eced-1b1e-4ad4-ad1b-d6cfbec052d0 d9a51a3b9c4e69f0b1896db06e7b2b90 { 'aliquot_tag': 'ALQ_c8fd20c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06809.RNA-Seq.chimeric.Tbm.hg38 C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 7bbfecc4-3f68-4d33-addd-38b33c98fa78.rna_seq.chimeric.gdc_realn.bam 461234582 BAM chimeric harmonized CPTAC3 8775293b-bc7b-4087-bcec-8eadea926eb3 b5ff44b4f42591738fe069fa8514a8dd { 'aliquot_tag': 'ALQ_c8fd20c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06809.RNA-Seq.genomic.Tbm.hg38 C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 7bbfecc4-3f68-4d33-addd-38b33c98fa78.rna_seq.genomic.gdc_realn.bam 6365773938 BAM genomic harmonized CPTAC3 dfabc53c-4df4-4610-a45c-64257d3d03d9 57a6da15f6a684606f140864d279997c { 'aliquot_tag': 'ALQ_c8fd20c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06809.RNA-Seq.R1_L004.Tbm C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 211207_UNC32-K00270_0306_BHMW5YBBXY_TAAGTGGT-CTTAAGCC_S15_L004_R1_001.fastq.gz 3191057802 FASTQ R1_L004 unaligned CPTAC3 ed6cfd64-6e72-42b6-844e-88234f7dbd0f ae636da75fa1b8ec2ca83a0f54d85e61 { 'aliquot_tag': 'ALQ_c8fd20c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-06809.RNA-Seq.R2_L004.Tbm C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 211207_UNC32-K00270_0306_BHMW5YBBXY_TAAGTGGT-CTTAAGCC_S15_L004_R2_001.fastq.gz 3380156902 FASTQ R2_L004 unaligned CPTAC3 fa5593e4-49bc-4567-84aa-3e6ed2214956 92cec9b832440c9f2cd8454ff4289f49 { 'aliquot_tag': 'ALQ_c8fd20c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-06809.RNA-Seq.transcriptome.Tbm.hg38 C3L-06809 AML RNA-Seq tumor_bone_marrow CPT0423790002 7bbfecc4-3f68-4d33-addd-38b33c98fa78.rna_seq.transcriptome.gdc_realn.bam 6753111201 BAM transcriptome harmonized CPTAC3 f1452d06-5ff6-4c59-ad04-c1192939ec7e 6cdd62d1952ea7b4c30af3145672e2a2 { 'aliquot_tag': 'ALQ_c8fd20c4', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06809.WGS.Nbc C3L-06809 AML WGS buccal_normal CPT0423880001 CPT0423880001.WholeGenome.RP-2158.bam 45467051600 BAM aligned CPTAC3 9e511863-7709-4f6a-94ad-79b844931036 a2d03a33cf7f4a5a2eaea22023ca770b { 'aliquot_tag': 'ALQ_9dc2ea1b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06809.WGS.Nbc.hg38 C3L-06809 AML WGS buccal_normal CPT0423880001 f12c5166-abe3-410e-9aea-37ef5d8bbe01_wgs_gdc_realn.bam 132246422085 BAM harmonized CPTAC3 57d26f1b-6ee3-425e-bab0-a006fab6ce90 c320ea25476e942b98e7735b7e50ed01 { 'aliquot_tag': 'ALQ_9dc2ea1b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06809.WGS.Tbm C3L-06809 AML WGS tumor_bone_marrow CPT0423800002 CPT0423800002.WholeGenome.RP-2158.bam 52132870980 BAM aligned CPTAC3 6a38ea85-b31f-430e-bf26-a89bc0ee091e 84c20dca3789aa0ba8df6cc75a7c3ef7 { 'aliquot_tag': 'ALQ_34bbf060', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06809.WGS.Tbm.hg38 C3L-06809 AML WGS tumor_bone_marrow CPT0423800002 fde4043f-91a8-42b6-8370-c1322ce342a7_wgs_gdc_realn.bam 153751798796 BAM harmonized CPTAC3 d5f641bb-a84b-4cb2-932f-e25c73ef9081 0aeaa193d8664364a4ffb5e33ec78f5c { 'aliquot_tag': 'ALQ_34bbf060', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06809.WXS.Nbc C3L-06809 AML WXS buccal_normal CPT0423880001 CPT0423880001.WholeExome.RP-1303.bam 15058857765 BAM aligned CPTAC3 1e3d84db-47d4-46b1-91c1-fc5173c5ba15 99ba78f20f60d821cbbe290a93d5421f { 'aliquot_tag': 'ALQ_9dc2ea1b', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06809.WXS.Nbc.hg38 C3L-06809 AML WXS buccal_normal CPT0423880001 f12c5166-abe3-410e-9aea-37ef5d8bbe01_wxs_gdc_realn.bam 20270095113 BAM harmonized CPTAC3 b95d946c-ecc7-4fdf-96d6-76d3ee43c96d cf9d5e475dd8f8a828fa4d60b1705204 { 'aliquot_tag': 'ALQ_9dc2ea1b', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06809.WXS.Tbm C3L-06809 AML WXS tumor_bone_marrow CPT0423800002 CPT0423800002.WholeExome.RP-1303.bam 22623712547 BAM aligned CPTAC3 52ff40ad-09e1-436a-9c29-18e9775426f0 5869900d905564e8fb2fd52e03592ba3 { 'aliquot_tag': 'ALQ_34bbf060', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06809.WXS.Tbm.hg38 C3L-06809 AML WXS tumor_bone_marrow CPT0423800002 fde4043f-91a8-42b6-8370-c1322ce342a7_wxs_gdc_realn.bam 31582854239 BAM harmonized CPTAC3 a8d547fc-05e3-482d-8b31-68ce5408887a 4703caaf6cc1d1dbafa4e16e3b44c06a { 'aliquot_tag': 'ALQ_34bbf060', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06912.miRNA-Seq.T C3L-06912 LGG miRNA-Seq tumor CPT0388940008 220505_UNC32-K00270_0319_AHMV2KBBXY_CGGAAT_S5_L003_R1_001.unaln.bam 386996923 BAM unaligned CPTAC3 c31ac29e-a56e-4e48-b377-caf32badf113 b3050cf5276ec747c59d992e1fc45dd1 { 'aliquot_tag': 'ALQ_1d1449e0', 'gdc_sample_type': 'Primary Tumor' } C3L-06951.MethArray.Green.Tbm C3L-06951 AML Methylation Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7536f1ee-4679-46e4-a4e5-781c7be164c7 f4ead826f31638df1d2f23d96e9bb6ba { 'aliquot_tag': 'ALQ_ef18eeb9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06951.MethArray.Red.Tbm C3L-06951 AML Methylation Array tumor_bone_marrow CPT0394100002 205555390164_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 0960a6c1-dfbf-44c0-8f57-21d4dced7374 3d7356ad63dfcd11f3e0c01bc134c710 { 'aliquot_tag': 'ALQ_ef18eeb9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06951.miRNA-Seq.Tbm C3L-06951 AML miRNA-Seq tumor_bone_marrow CPT0394200002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATTCCT_S24_L005_R1_001.unaln.bam 239355372 BAM unaligned CPTAC3 b59050bc-46cd-4685-885c-0158c2668e4c 1e2c1fba0ad0a930d6d10ea006301cca { 'aliquot_tag': 'ALQ_698c9c17', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06951.RNA-Seq.R1_L002.Tbm C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGCTATGT-TCCGACAC_S6_L002_R1_001.fastq.gz 4888313496 FASTQ R1_L002 unaligned CPTAC3 72612251-54a1-4fc4-a820-484b2c7da4b8 fcb2d69ec54b658b465679b9a2216b1f { 'aliquot_tag': 'ALQ_698c9c17', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06951.RNA-Seq.R2_L002.Tbm C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGCTATGT-TCCGACAC_S6_L002_R2_001.fastq.gz 5232313383 FASTQ R2_L002 unaligned CPTAC3 73c35958-c9f9-474c-bf29-4a69904abece 432af186c1b8113dc77e5d9a4fb23999 { 'aliquot_tag': 'ALQ_698c9c17', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06951.miRNA-Seq.Tbm.hg38 C3L-06951 AML miRNA-Seq tumor_bone_marrow CPT0394200002 bcc331a7-1f4e-4020-aae8-08f6d960d7f8_mirnaseq_gdc_realn.bam 249744954 BAM harmonized CPTAC3 5bf42a7a-6a8c-437e-8125-e87234c84ddb ea7ea497e1937eb7ea1ea6e3c5171a21 { 'aliquot_tag': 'ALQ_698c9c17', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06951.RNA-Seq.chimeric.Tbm.hg38 C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 4fee1e6f-54eb-4a2a-b104-214cda27001f.rna_seq.chimeric.gdc_realn.bam 396600781 BAM chimeric harmonized CPTAC3 931c1a2e-2cb3-4d27-9995-52c931611f94 92984513e647d89a0fd89436d127451a { 'aliquot_tag': 'ALQ_698c9c17', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06951.RNA-Seq.genomic.Tbm.hg38 C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 4fee1e6f-54eb-4a2a-b104-214cda27001f.rna_seq.genomic.gdc_realn.bam 10003377970 BAM genomic harmonized CPTAC3 d875ab14-6fa7-4323-965b-b2ceefaaa97f 6b409eb2c163ffa6acfa220c71e73f48 { 'aliquot_tag': 'ALQ_698c9c17', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06951.RNA-Seq.R1_L002.Tbm C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGCTATGT-TCCGACAC_S6_L002_R1_001.fastq.gz 4888313496 FASTQ R1_L002 unaligned CPTAC3 72612251-54a1-4fc4-a820-484b2c7da4b8 fcb2d69ec54b658b465679b9a2216b1f { 'aliquot_tag': 'ALQ_698c9c17', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3L-06951.RNA-Seq.R2_L002.Tbm C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 210708_UNC32-K00270_0290_BHLLHHBBXY_CGCTATGT-TCCGACAC_S6_L002_R2_001.fastq.gz 5232313383 FASTQ R2_L002 unaligned CPTAC3 73c35958-c9f9-474c-bf29-4a69904abece 432af186c1b8113dc77e5d9a4fb23999 { 'aliquot_tag': 'ALQ_698c9c17', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3L-06951.RNA-Seq.transcriptome.Tbm.hg38 C3L-06951 AML RNA-Seq tumor_bone_marrow CPT0394200002 4fee1e6f-54eb-4a2a-b104-214cda27001f.rna_seq.transcriptome.gdc_realn.bam 10806456734 BAM transcriptome harmonized CPTAC3 83b9cadf-dc16-4054-a449-8bbdad4c501b 2e20fe6b1a1eaca6128e6ba7ca359977 { 'aliquot_tag': 'ALQ_698c9c17', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06951.WGS.Nbc C3L-06951 AML WGS buccal_normal CPT0394950002 CPT0394950002.WholeGenome.RP-2158.bam 44455880668 BAM aligned CPTAC3 e3edf313-263b-4cc0-8437-e6589bff148a c3bd91857360d1647eb5cdf40406fe52 { 'aliquot_tag': 'ALQ_cbabe3a4', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06951.WGS.Nbc.hg38 C3L-06951 AML WGS buccal_normal CPT0394950002 6e106fcb-29f4-4c38-a4d2-920f1483a216_wgs_gdc_realn.bam 132392147301 BAM harmonized CPTAC3 78899104-aff8-41cb-865c-bbcda214cde3 b2d67cfe0eda5f04b32de7460e43170b { 'aliquot_tag': 'ALQ_cbabe3a4', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06951.WGS.Tbm C3L-06951 AML WGS tumor_bone_marrow CPT0394100002 CPT0394100002.WholeGenome.RP-2158.bam 51518910865 BAM aligned CPTAC3 f2307760-ea9f-4d75-9a90-9e4d1788e655 409fcb59e293d4a9635857d5c7f9aa93 { 'aliquot_tag': 'ALQ_ef18eeb9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06951.WGS.Tbm.hg38 C3L-06951 AML WGS tumor_bone_marrow CPT0394100002 cf505366-987d-4e91-b5fb-696d2cde908a_wgs_gdc_realn.bam 156050815880 BAM harmonized CPTAC3 097d3f76-6044-4639-a353-cddbae861463 7a8fb6e5ab7c623063bca5a89e73bb8b { 'aliquot_tag': 'ALQ_ef18eeb9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06951.WXS.Nbc C3L-06951 AML WXS buccal_normal CPT0394950002 CPT0394950002.WholeExome.RP-1303.bam 37650241835 BAM aligned CPTAC3 cd9384fa-19fc-4279-8626-5ccfcbef03b9 515effcc82d62bac2db60d83db74acea { 'aliquot_tag': 'ALQ_cbabe3a4', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06951.WXS.Nbc.hg38 C3L-06951 AML WXS buccal_normal CPT0394950002 6e106fcb-29f4-4c38-a4d2-920f1483a216_wxs_gdc_realn.bam 51682983387 BAM harmonized CPTAC3 df688043-449a-4715-ada1-d3a72f034115 a17f7a02dcac079d50178c6859e0eaa5 { 'aliquot_tag': 'ALQ_cbabe3a4', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06951.WXS.Tbm C3L-06951 AML WXS tumor_bone_marrow CPT0394100002 CPT0394100002.WholeExome.RP-1303.bam 21283649473 BAM aligned CPTAC3 76e68d71-001f-4ded-94f7-b92ed5762c48 548350a2d6d7ecdb27e87c4c5befc0d7 { 'aliquot_tag': 'ALQ_ef18eeb9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06951.WXS.Tbm.hg38 C3L-06951 AML WXS tumor_bone_marrow CPT0394100002 cf505366-987d-4e91-b5fb-696d2cde908a_wxs_gdc_realn.bam 29310105335 BAM harmonized CPTAC3 9bae9f55-ce2d-472c-9de6-1cce8a6931fe 52041bbcec90426e6600ccc2e98f12e9 { 'aliquot_tag': 'ALQ_ef18eeb9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06952.MethArray.Green.Tbm C3L-06952 AML Methylation Array tumor_bone_marrow CPT0395410002 205549610123_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 d93d95c0-f3cf-40f9-a6b2-d5b18c8d6b4c 6d1c2ec61e02ccc261a584375fe2b0f7 { 'aliquot_tag': 'ALQ_24c25d0e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06952.MethArray.Red.Tbm C3L-06952 AML Methylation Array tumor_bone_marrow CPT0395410002 205549610123_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 098a232b-68bf-41f7-9041-7a64ac08f27f f182dc9282d1d18d7dc4a6f62666910e { 'aliquot_tag': 'ALQ_24c25d0e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06952.miRNA-Seq.Tbm C3L-06952 AML miRNA-Seq tumor_bone_marrow CPT0395420002 210331_UNC31-K00269_0297_AHKCFKBBXY_AGTTCC_S17_L007_R1_001.unaln.bam 327307434 BAM unaligned CPTAC3 15c6d0d0-c26b-436a-b545-d5aaadeca776 e0588f2165419d02a5f78aa973e31f67 { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06952.miRNA-Seq.Tbm.hg38 C3L-06952 AML miRNA-Seq tumor_bone_marrow CPT0395420002 30fc53f9-bc30-4b18-b02f-34e978ab3f58_mirnaseq_gdc_realn.bam 341488236 BAM harmonized CPTAC3 f9ae69cb-e501-4a27-895a-de92b3042c75 0b8c2f0beaf7b602295050175224a8ea { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06952.RNA-Seq.chimeric.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.chimeric.gdc_realn.bam 232963356 BAM chimeric harmonized CPTAC3 86b9de45-176b-4e9e-a16b-edc83fc27d5b 53fc0f1bc4f5a82b68ff7daadf18abc0 { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06952.RNA-Seq.genomic.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.genomic.gdc_realn.bam 8571025082 BAM genomic harmonized CPTAC3 90465dff-783a-41e0-8f9e-c3243ba08112 9a9667c9fbc5d00f56e30bf4d19bc352 { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06952.RNA-Seq.R1_L007.Tbm C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 210318_UNC32-K00270_0277_AHKNTVBBXY_TTGGACTC-GGAAGCAG_S60_L007_R1_001.fastq.gz 3968146646 FASTQ R1_L007 unaligned CPTAC3 782c5640-f8b7-45b8-ac5a-76650aa56634 836c7e2dd63131c7714545a2181cd09b { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06952.RNA-Seq.R2_L007.Tbm C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 210318_UNC32-K00270_0277_AHKNTVBBXY_TTGGACTC-GGAAGCAG_S60_L007_R2_001.fastq.gz 4408260299 FASTQ R2_L007 unaligned CPTAC3 53e1a623-56d3-4599-b9a1-2d4e77e67906 c9cda8d3c68b5197ba51dd804c66932d { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06952.RNA-Seq.transcriptome.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.transcriptome.gdc_realn.bam 8656496991 BAM transcriptome harmonized CPTAC3 fd423fea-4ef0-4e0a-aa87-0d4fa23ff761 2448895826651d406ca0ff24bc128bf4 { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06952.RNA-Seq.chimeric.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.chimeric.gdc_realn.bam 232963356 BAM chimeric harmonized CPTAC3 b833b07a-ed58-45d1-8647-8ca02985888d 53fc0f1bc4f5a82b68ff7daadf18abc0 { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06952.RNA-Seq.genomic.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.genomic.gdc_realn.bam 8571025082 BAM genomic harmonized CPTAC3 356413dc-97fb-4db0-87a6-506fc0290c62 9a9667c9fbc5d00f56e30bf4d19bc352 { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06952.RNA-Seq.R1_L007.Tbm C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 210318_UNC32-K00270_0277_AHKNTVBBXY_TTGGACTC-GGAAGCAG_S60_L007_R1_001.fastq.gz 3968146646 FASTQ R1_L007 unaligned CPTAC3 782c5640-f8b7-45b8-ac5a-76650aa56634 836c7e2dd63131c7714545a2181cd09b { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-06952.RNA-Seq.R2_L007.Tbm C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 210318_UNC32-K00270_0277_AHKNTVBBXY_TTGGACTC-GGAAGCAG_S60_L007_R2_001.fastq.gz 4408260299 FASTQ R2_L007 unaligned CPTAC3 53e1a623-56d3-4599-b9a1-2d4e77e67906 c9cda8d3c68b5197ba51dd804c66932d { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-06952.RNA-Seq.transcriptome.Tbm.hg38 C3L-06952 AML RNA-Seq tumor_bone_marrow CPT0395420002 8608f13a-6196-4625-b99b-c6772d714f51.rna_seq.transcriptome.gdc_realn.bam 8656496991 BAM transcriptome harmonized CPTAC3 0c5f1608-a6c7-4c9e-8888-a0e07b4ade5c 2448895826651d406ca0ff24bc128bf4 { 'aliquot_tag': 'ALQ_636227de', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06952.WGS.Nbc C3L-06952 AML WGS buccal_normal CPT0395510002 CPT0395510002.WholeGenome.RP-2158.bam 75954257744 BAM aligned CPTAC3 0a5356fd-1f3f-4a03-b523-d7964e39bcc4 2c2a6e364f65c6d24143435e958d48a0 { 'aliquot_tag': 'ALQ_ef9e8eab', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06952.WGS.Nbc.hg38 C3L-06952 AML WGS buccal_normal CPT0395510002 c1f795c9-57d0-4621-9675-cbffdae3e8e2_wgs_gdc_realn.bam 228222566924 BAM harmonized CPTAC3 fe83e9be-7e7a-4295-906d-0317b2a405b5 0471dda043fd793e1447dd603f6a5c54 { 'aliquot_tag': 'ALQ_ef9e8eab', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06952.WGS.Tbm C3L-06952 AML WGS tumor_bone_marrow CPT0395410002 CPT0395410002.WholeGenome.RP-2158.bam 51171230305 BAM aligned CPTAC3 9026673e-52de-47de-b603-fdc55fbb7b9c 9d179a1ad9d9b6f787093f009a77f4eb { 'aliquot_tag': 'ALQ_24c25d0e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06952.WGS.Tbm.hg38 C3L-06952 AML WGS tumor_bone_marrow CPT0395410002 156bb375-1e32-45ea-b6bb-2c8264042561_wgs_gdc_realn.bam 150043727921 BAM harmonized CPTAC3 e786c669-ae8d-4f7e-9ff3-a8b674b81574 85f9b048311ba91ade683b6d76cd5f1d { 'aliquot_tag': 'ALQ_24c25d0e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06952.WXS.Nbc C3L-06952 AML WXS buccal_normal CPT0395510002 CPT0395510002.WholeExome.RP-1303.bam 22002595662 BAM aligned CPTAC3 01fca049-65fd-405b-b63a-b4dff2df8b78 c88373707a0553874a48ded5e5e7978b { 'aliquot_tag': 'ALQ_ef9e8eab', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06952.WXS.Nbc.hg38 C3L-06952 AML WXS buccal_normal CPT0395510002 c1f795c9-57d0-4621-9675-cbffdae3e8e2_wxs_gdc_realn.bam 29996042851 BAM harmonized CPTAC3 6675d018-2b90-40db-9ce3-4a5b08793284 eba03d6d0ea9e55d234021aa1c943bad { 'aliquot_tag': 'ALQ_ef9e8eab', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06952.WXS.Tbm C3L-06952 AML WXS tumor_bone_marrow CPT0395410002 CPT0395410002.WholeExome.RP-1303.bam 26950284899 BAM aligned CPTAC3 49f23ebb-f5e4-45e6-8527-8a503fa8d973 5aa26de6bfc81a9b12b3316f4188ac4f { 'aliquot_tag': 'ALQ_24c25d0e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06952.WXS.Tbm.hg38 C3L-06952 AML WXS tumor_bone_marrow CPT0395410002 156bb375-1e32-45ea-b6bb-2c8264042561_wxs_gdc_realn.bam 37511199516 BAM harmonized CPTAC3 3076a431-760e-4f15-b24e-c563256de372 5d0fbde8fbe847caabcaacddfa254c1f { 'aliquot_tag': 'ALQ_24c25d0e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06953.MethArray.Green.Tbm C3L-06953 AML Methylation Array tumor_bone_marrow CPT0395220002 205555380155_R08C01_Grn.idat 13677955 IDAT Green NA CPTAC3 41d398d2-add1-4700-8e43-12ebd5fdaf9d 3588200eefeeb1d11205bfecaa1a5567 { 'aliquot_tag': 'ALQ_b53bc4c3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06953.MethArray.Red.Tbm C3L-06953 AML Methylation Array tumor_bone_marrow CPT0395220002 205555380155_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 a15ce8cf-917d-4168-9823-35531af05a65 e5a58770087e976a8d8b46910b76f010 { 'aliquot_tag': 'ALQ_b53bc4c3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06953.miRNA-Seq.Tbm C3L-06953 AML miRNA-Seq tumor_bone_marrow CPT0395230002 210331_UNC31-K00269_0297_AHKCFKBBXY_AGTCAA_S16_L007_R1_001.unaln.bam 271339385 BAM unaligned CPTAC3 dde5945b-0705-49da-9970-fa7f98623c57 0d14b7e872af879dcd4273ad0295ad0e { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06953.miRNA-Seq.Tbm.hg38 C3L-06953 AML miRNA-Seq tumor_bone_marrow CPT0395230002 91e85879-662c-4c71-980d-a58e4732345b_mirnaseq_gdc_realn.bam 282770503 BAM harmonized CPTAC3 4b7fa91e-ec25-4252-acd3-8cbe2de3a819 737111ffb2e0340b96030f512d76f7e6 { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06953.RNA-Seq.chimeric.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.chimeric.gdc_realn.bam 94701367 BAM chimeric harmonized CPTAC3 7c89e8e6-2f00-4e14-89d0-1593c938ae5f 7136b10989960cfdab523e607c7d584f { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06953.RNA-Seq.genomic.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.genomic.gdc_realn.bam 8461643378 BAM genomic harmonized CPTAC3 d6f8f39c-d247-4c7a-b5db-097892eb8c93 a3e3bb4d7ff33baed2d1f5e36b5ef398 { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06953.RNA-Seq.R1_L007.Tbm C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 210318_UNC32-K00270_0277_AHKNTVBBXY_CCAAGTCT-AAGGATGA_S58_L007_R1_001.fastq.gz 4203285851 FASTQ R1_L007 unaligned CPTAC3 5d86a6e3-615a-4394-991c-d9e3b53524ba b7abc88f28809b9e5f42cdf185dedcdb { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06953.RNA-Seq.R2_L007.Tbm C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 210318_UNC32-K00270_0277_AHKNTVBBXY_CCAAGTCT-AAGGATGA_S58_L007_R2_001.fastq.gz 4610087193 FASTQ R2_L007 unaligned CPTAC3 c6aefb82-695a-4f31-9bc4-7b18ad9c12c5 2448c00e2c1418f9f3734cafd690d637 { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06953.RNA-Seq.transcriptome.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.transcriptome.gdc_realn.bam 10798323578 BAM transcriptome harmonized CPTAC3 55dcd860-b80f-4d8f-9566-8ed161f241d3 2f8ca24193a381de3c6931ee525caf34 { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06953.RNA-Seq.chimeric.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.chimeric.gdc_realn.bam 94701367 BAM chimeric harmonized CPTAC3 4a63c44e-3977-446b-a158-4239e218b08b 7136b10989960cfdab523e607c7d584f { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06953.RNA-Seq.genomic.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.genomic.gdc_realn.bam 8461643378 BAM genomic harmonized CPTAC3 aeab5b3a-51a4-466e-90ad-08e8b706dac5 a3e3bb4d7ff33baed2d1f5e36b5ef398 { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06953.RNA-Seq.R1_L007.Tbm C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 210318_UNC32-K00270_0277_AHKNTVBBXY_CCAAGTCT-AAGGATGA_S58_L007_R1_001.fastq.gz 4203285851 FASTQ R1_L007 unaligned CPTAC3 5d86a6e3-615a-4394-991c-d9e3b53524ba b7abc88f28809b9e5f42cdf185dedcdb { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3L-06953.RNA-Seq.R2_L007.Tbm C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 210318_UNC32-K00270_0277_AHKNTVBBXY_CCAAGTCT-AAGGATGA_S58_L007_R2_001.fastq.gz 4610087193 FASTQ R2_L007 unaligned CPTAC3 c6aefb82-695a-4f31-9bc4-7b18ad9c12c5 2448c00e2c1418f9f3734cafd690d637 { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3L-06953.RNA-Seq.transcriptome.Tbm.hg38 C3L-06953 AML RNA-Seq tumor_bone_marrow CPT0395230002 b0194c5c-e4ec-4275-a93b-5f2bb57e8418.rna_seq.transcriptome.gdc_realn.bam 10798323578 BAM transcriptome harmonized CPTAC3 23c3b280-08e9-44db-9187-7dfc79749f62 2f8ca24193a381de3c6931ee525caf34 { 'aliquot_tag': 'ALQ_885bed73', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06953.WGS.Nbc C3L-06953 AML WGS buccal_normal CPT0395300002 CPT0395300002.WholeGenome.RP-2158.bam 57220760446 BAM aligned CPTAC3 3f946631-f3c1-46c8-aaf5-a8784b22aa55 b240be47d491fa75ae611d2d585f5012 { 'aliquot_tag': 'ALQ_4a74406', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06953.WGS.Nbc.hg38 C3L-06953 AML WGS buccal_normal CPT0395300002 cc7377a7-4292-4a42-888a-59e14942e42f_wgs_gdc_realn.bam 167692914296 BAM harmonized CPTAC3 afa8c524-60e7-423b-9677-8653c4a5da65 9620afeaef05f9ea15920e46b33c7cfb { 'aliquot_tag': 'ALQ_4a74406', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06953.WGS.Tbm C3L-06953 AML WGS tumor_bone_marrow CPT0395220002 CPT0395220002.WholeGenome.RP-2158.bam 60825726424 BAM aligned CPTAC3 e2bad822-24ea-4524-aa4d-599c4b537429 6193087ce48179e4977d620ea6031f4e { 'aliquot_tag': 'ALQ_b53bc4c3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06953.WGS.Tbm.hg38 C3L-06953 AML WGS tumor_bone_marrow CPT0395220002 19eadde7-2a40-4880-900d-440197bd5266_wgs_gdc_realn.bam 181530152719 BAM harmonized CPTAC3 02b919c1-e7df-495f-8084-65f8a1af6e45 f0ebf7225cd6b3efc6b4d2f46b513202 { 'aliquot_tag': 'ALQ_b53bc4c3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06953.WXS.Nbc C3L-06953 AML WXS buccal_normal CPT0395300002 CPT0395300002.WholeExome.RP-1303.bam 28034794123 BAM aligned CPTAC3 dfad5081-80c8-40d7-94e6-6a2f88a4aa4f d35dd7df532947c08d9638282d1cff69 { 'aliquot_tag': 'ALQ_4a74406', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06953.WXS.Nbc.hg38 C3L-06953 AML WXS buccal_normal CPT0395300002 cc7377a7-4292-4a42-888a-59e14942e42f_wxs_gdc_realn.bam 38181902951 BAM harmonized CPTAC3 ed6f6bd3-3d31-4dd8-8cb8-0bde987c9a1e 3a86e81f5db91985056d18f26a1f5be5 { 'aliquot_tag': 'ALQ_4a74406', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06953.WXS.Tbm C3L-06953 AML WXS tumor_bone_marrow CPT0395220002 CPT0395220002.WholeExome.RP-1303.bam 24227511690 BAM aligned CPTAC3 aa489119-ef01-4338-839b-0ffd14832733 fef39eaa9967b4cb9bee274e7bc5fee5 { 'aliquot_tag': 'ALQ_b53bc4c3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06953.WXS.Tbm.hg38 C3L-06953 AML WXS tumor_bone_marrow CPT0395220002 19eadde7-2a40-4880-900d-440197bd5266_wxs_gdc_realn.bam 33729200165 BAM harmonized CPTAC3 b586f9bd-1b9f-4d68-8b7c-3b37b97a3725 228b495fa148a365010b298b19f6f619 { 'aliquot_tag': 'ALQ_b53bc4c3', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06954.MethArray.Green.Tbm C3L-06954 AML Methylation Array tumor_bone_marrow CPT0423470002 205705520145_R07C01_Grn.idat 13677885 IDAT Green NA CPTAC3 9c9659b5-caf6-4956-ae98-477e852aae4a b5fbb4e428a9fa450332d36623ebd897 { 'aliquot_tag': 'ALQ_f159ec0b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06954.MethArray.Red.Tbm C3L-06954 AML Methylation Array tumor_bone_marrow CPT0423470002 205705520145_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 afb0c87d-0ea7-42c4-9de4-14e13c14d3f8 670330814ac3fe8cc5bd8be57f09bac2 { 'aliquot_tag': 'ALQ_f159ec0b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06954.miRNA-Seq.Tbm C3L-06954 AML miRNA-Seq tumor_bone_marrow CPT0423480002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTCCGC_S38_L002_R1_001.unaln.bam 275216986 BAM unaligned CPTAC3 3a167d9a-82fb-4944-8ecb-9b090de78afd ed473fffc34a385a69df8c8a79d62076 { 'aliquot_tag': 'ALQ_73097bda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06954.RNA-Seq.R1_L003.Tbm C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 211207_UNC32-K00270_0306_BHMW5YBBXY_GATTCTGC-GACGAGAG_S11_L003_R1_001.fastq.gz 3449383220 FASTQ R1_L003 unaligned CPTAC3 6e69dd94-7aee-4c00-9685-cc4ba3fd648c c8e51812e89e631307f0bae7fdaf76a4 { 'aliquot_tag': 'ALQ_73097bda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-06954.RNA-Seq.R2_L003.Tbm C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 211207_UNC32-K00270_0306_BHMW5YBBXY_GATTCTGC-GACGAGAG_S11_L003_R2_001.fastq.gz 3638286868 FASTQ R2_L003 unaligned CPTAC3 a266ecc3-6056-4bf3-b120-43a4c9028a9e 55a485a38fb6e5ec2ec317af2f2c551c { 'aliquot_tag': 'ALQ_73097bda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06954.miRNA-Seq.Tbm.hg38 C3L-06954 AML miRNA-Seq tumor_bone_marrow CPT0423480002 246cd9e5-be9c-46e0-8a7a-d2416500ce06_mirnaseq_gdc_realn.bam 303033677 BAM harmonized CPTAC3 c30d807f-37c6-49c5-bec0-fbcaf4810ce0 67d32d2900fccfde21d0c9cdc04d9f3a { 'aliquot_tag': 'ALQ_73097bda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06954.RNA-Seq.chimeric.Tbm.hg38 C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 67c7eacd-54c6-404e-8f92-944f2ea818d4.rna_seq.chimeric.gdc_realn.bam 472668209 BAM chimeric harmonized CPTAC3 e622cb1f-a8cd-4317-99ea-0d2f0e432e90 15668aba093a77944c4ad48a1cf7e44a { 'aliquot_tag': 'ALQ_73097bda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06954.RNA-Seq.genomic.Tbm.hg38 C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 67c7eacd-54c6-404e-8f92-944f2ea818d4.rna_seq.genomic.gdc_realn.bam 6902144941 BAM genomic harmonized CPTAC3 c4de3061-8b9c-40fe-bd11-b6eecfab8f07 085485ded0a02696a89aae647534ec40 { 'aliquot_tag': 'ALQ_73097bda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06954.RNA-Seq.R1_L003.Tbm C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 211207_UNC32-K00270_0306_BHMW5YBBXY_GATTCTGC-GACGAGAG_S11_L003_R1_001.fastq.gz 3449383220 FASTQ R1_L003 unaligned CPTAC3 6e69dd94-7aee-4c00-9685-cc4ba3fd648c c8e51812e89e631307f0bae7fdaf76a4 { 'aliquot_tag': 'ALQ_73097bda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3L-06954.RNA-Seq.R2_L003.Tbm C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 211207_UNC32-K00270_0306_BHMW5YBBXY_GATTCTGC-GACGAGAG_S11_L003_R2_001.fastq.gz 3638286868 FASTQ R2_L003 unaligned CPTAC3 a266ecc3-6056-4bf3-b120-43a4c9028a9e 55a485a38fb6e5ec2ec317af2f2c551c { 'aliquot_tag': 'ALQ_73097bda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3L-06954.RNA-Seq.transcriptome.Tbm.hg38 C3L-06954 AML RNA-Seq tumor_bone_marrow CPT0423480002 67c7eacd-54c6-404e-8f92-944f2ea818d4.rna_seq.transcriptome.gdc_realn.bam 7750372808 BAM transcriptome harmonized CPTAC3 9c2266d6-7dbe-485a-a83d-3b7af76eee36 b0ad9e34c3b7e5e8f210ce5bddf50f6b { 'aliquot_tag': 'ALQ_73097bda', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06954.WGS.Nbc C3L-06954 AML WGS buccal_normal CPT0423500001 CPT0423500001.WholeGenome.RP-2158.bam 58884055193 BAM aligned CPTAC3 f7a5bedb-0983-4bdf-b113-c1ad8fa2ce97 fb465cef94ad852e1f9175e2ec6bf9ca { 'aliquot_tag': 'ALQ_112cb204', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06954.WGS.Nbc.hg38 C3L-06954 AML WGS buccal_normal CPT0423500001 ca5af8e9-6a4f-4244-8fd6-e59e7cef3672_wgs_gdc_realn.bam 188003601209 BAM harmonized CPTAC3 e38b72b0-4f7c-4a17-9de2-6d95e2bc60ee 4336a22ce2d3fb0688f001561307386c { 'aliquot_tag': 'ALQ_112cb204', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06954.WGS.Tbm C3L-06954 AML WGS tumor_bone_marrow CPT0423470002 CPT0423470002.WholeGenome.RP-2158.bam 43251016065 BAM aligned CPTAC3 2f979a56-db4c-42cd-933d-ca5c169f8c66 d0cac524d0a7297b9ae021445c262d0b { 'aliquot_tag': 'ALQ_f159ec0b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06954.WGS.Tbm.hg38 C3L-06954 AML WGS tumor_bone_marrow CPT0423470002 aa274cea-5bc3-419e-905e-3fd377deea83_wgs_gdc_realn.bam 126981110892 BAM harmonized CPTAC3 4aec74c8-8469-4ab7-874e-cd559c14c396 6c31cbc0c4c0e6fcdc9323fbcca69000 { 'aliquot_tag': 'ALQ_f159ec0b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-06954.WXS.Nbc C3L-06954 AML WXS buccal_normal CPT0423500001 CPT0423500001.WholeExome.RP-1303.bam 24256707743 BAM aligned CPTAC3 296eb30a-fa65-4303-96b7-915727409251 07ebf0ec3b75938ad8b9c6ff95352a2b { 'aliquot_tag': 'ALQ_112cb204', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06954.WXS.Nbc.hg38 C3L-06954 AML WXS buccal_normal CPT0423500001 ca5af8e9-6a4f-4244-8fd6-e59e7cef3672_wxs_gdc_realn.bam 33673761951 BAM harmonized CPTAC3 82af1ee3-e913-4459-b382-234ff07db7c9 d037e87c2d83908b61f71cfd434bc808 { 'aliquot_tag': 'ALQ_112cb204', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06954.WXS.Tbm C3L-06954 AML WXS tumor_bone_marrow CPT0423470002 CPT0423470002.WholeExome.RP-1303.bam 24955957515 BAM aligned CPTAC3 6b5a4720-64bb-4a4a-b451-79e38291db71 1a8367f430206d28969a4068dfb68761 { 'aliquot_tag': 'ALQ_f159ec0b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06954.WXS.Tbm.hg38 C3L-06954 AML WXS tumor_bone_marrow CPT0423470002 aa274cea-5bc3-419e-905e-3fd377deea83_wxs_gdc_realn.bam 34659973786 BAM harmonized CPTAC3 6eb8ce2b-7b02-4f76-a9e9-337c110f9143 3901b0fe5124b8a8a6ce25e67432d74e { 'aliquot_tag': 'ALQ_f159ec0b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-06956.MethArray.Green.Tpb C3L-06956 AML Methylation Array tumor_peripheral_blood CPT0374940002 205707890143_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 eb1a15ed-0629-4f18-8074-548f3c644183 07e6fdcbaad467bb933fa856aeb4b93f { 'aliquot_tag': 'ALQ_e341d826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06956.MethArray.Red.Tpb C3L-06956 AML Methylation Array tumor_peripheral_blood CPT0374940002 205707890143_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 becba68d-6f48-4494-802c-88d2669cf05e 1352c365ebe97015246262fbeeb70b41 { 'aliquot_tag': 'ALQ_e341d826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06956.miRNA-Seq.Tpb C3L-06956 AML miRNA-Seq tumor_peripheral_blood CPT0374950002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACGAT_S3_L001_R1_001.unaln.bam 358467091 BAM unaligned CPTAC3 2cfcb7f4-d544-49b8-97de-27f441184fc7 067612655d6b83aa610de5653ab53052 { 'aliquot_tag': 'ALQ_de21f196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06956.RNA-Seq.R1_L001.Tpb C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L001_R1_001.fastq.gz 4494920980 FASTQ R1_L001 unaligned CPTAC3 6a2d3cf1-f333-4a81-97ba-debd9fcf5bd9 10318a1832969b899e26d67ea85c177a { 'aliquot_tag': 'ALQ_de21f196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06956.RNA-Seq.R2_L001.Tpb C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L001_R2_001.fastq.gz 4971841013 FASTQ R2_L001 unaligned CPTAC3 118a555b-6ad2-4592-ad23-800e55af36cf 03e8f725b198b146e3200c3d06ad1f37 { 'aliquot_tag': 'ALQ_de21f196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06956.miRNA-Seq.Tpb.hg38 C3L-06956 AML miRNA-Seq tumor_peripheral_blood CPT0374950002 692193c7-43bd-4cb6-8d95-ea7bae96d1e2_mirnaseq_gdc_realn.bam 395286845 BAM harmonized CPTAC3 13951a81-a1c6-4955-b3be-1fb273603a1e ac427c830f9ad9873d7b520fd7278f4f { 'aliquot_tag': 'ALQ_de21f196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06956.RNA-Seq.chimeric.Tpb.hg38 C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 d470badc-35e9-4846-b2f3-a584e29f3259.rna_seq.chimeric.gdc_realn.bam 629501646 BAM chimeric harmonized CPTAC3 75d7ee0f-1e81-4109-bf9f-3319cfe8a266 9e2a4617d69266aadd9ae58317fa2d08 { 'aliquot_tag': 'ALQ_de21f196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06956.RNA-Seq.genomic.Tpb.hg38 C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 d470badc-35e9-4846-b2f3-a584e29f3259.rna_seq.genomic.gdc_realn.bam 9556913650 BAM genomic harmonized CPTAC3 4638749f-fa56-4155-98a8-eecd9834daa9 506b2b84af4a93a3345aa096bdd4ebe8 { 'aliquot_tag': 'ALQ_de21f196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06956.RNA-Seq.R1_L001.Tpb C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L001_R1_001.fastq.gz 4494920980 FASTQ R1_L001 unaligned CPTAC3 6a2d3cf1-f333-4a81-97ba-debd9fcf5bd9 10318a1832969b899e26d67ea85c177a { 'aliquot_tag': 'ALQ_de21f196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L001' } +C3L-06956.RNA-Seq.R2_L001.Tpb C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L001_R2_001.fastq.gz 4971841013 FASTQ R2_L001 unaligned CPTAC3 118a555b-6ad2-4592-ad23-800e55af36cf 03e8f725b198b146e3200c3d06ad1f37 { 'aliquot_tag': 'ALQ_de21f196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L001' } +C3L-06956.RNA-Seq.transcriptome.Tpb.hg38 C3L-06956 AML RNA-Seq tumor_peripheral_blood CPT0374950002 d470badc-35e9-4846-b2f3-a584e29f3259.rna_seq.transcriptome.gdc_realn.bam 7976814554 BAM transcriptome harmonized CPTAC3 831017b4-ef34-4289-8f4b-8ca332540f52 2005d55137e38fd1f63b34443e8bc4c1 { 'aliquot_tag': 'ALQ_de21f196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06956.WGS.Nbc C3L-06956 AML WGS buccal_normal CPT0375020002 CPT0375020002.WholeGenome.RP-2158.bam 43333454812 BAM aligned CPTAC3 277f6625-57d6-4ec2-a153-c3e3b414b64d 672c0bafc967dc5057930d095c87fac9 { 'aliquot_tag': 'ALQ_ed7977fa', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06956.WGS.Nbc.hg38 C3L-06956 AML WGS buccal_normal CPT0375020002 804b5c18-8967-45ca-bc6c-43194e323041_wgs_gdc_realn.bam 130026449193 BAM harmonized CPTAC3 2e498503-abe4-4a2e-bd04-c67b0c6f4f21 b105bfd8e16dc093865ae20354372945 { 'aliquot_tag': 'ALQ_ed7977fa', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06956.WGS.Tpb C3L-06956 AML WGS tumor_peripheral_blood CPT0374940002 CPT0374940002.WholeGenome.RP-2158.bam 45296406538 BAM aligned CPTAC3 db7c9ffb-e3fc-41b2-8ff2-d6570c102778 40b8c4b2d90c7480788445e1d065216a { 'aliquot_tag': 'ALQ_e341d826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06956.WGS.Tpb.hg38 C3L-06956 AML WGS tumor_peripheral_blood CPT0374940002 51774116-cdbd-4aa9-ac9b-acf207f1b92a_wgs_gdc_realn.bam 136257088788 BAM harmonized CPTAC3 a92e4a18-8fa1-4edc-97f7-7b88cf8cb6f8 65f76d5b645920ad83d7d7d9fb244d75 { 'aliquot_tag': 'ALQ_e341d826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06956.WXS.Nbc C3L-06956 AML WXS buccal_normal CPT0375020002 CPT0375020002.WholeExome.RP-1303.bam 27737887396 BAM aligned CPTAC3 3d734d08-7e85-4326-a4fa-b34a3130ba09 7957c31e83f282546bd7aa804d6344ea { 'aliquot_tag': 'ALQ_ed7977fa', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06956.WXS.Nbc.hg38 C3L-06956 AML WXS buccal_normal CPT0375020002 804b5c18-8967-45ca-bc6c-43194e323041_wxs_gdc_realn.bam 37221881366 BAM harmonized CPTAC3 f8d8ac5d-64bc-4103-8946-5a5d8a87d717 3b33c3cd6a5ca207fe909cc2edc83893 { 'aliquot_tag': 'ALQ_ed7977fa', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06956.WXS.Tpb C3L-06956 AML WXS tumor_peripheral_blood CPT0374940002 CPT0374940002.WholeExome.RP-1303.bam 23437020362 BAM aligned CPTAC3 7298cbd4-edb0-42c7-8fe5-4289a771c530 10a4b5af12a014868dc2a0f49350a564 { 'aliquot_tag': 'ALQ_e341d826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06956.WXS.Tpb.hg38 C3L-06956 AML WXS tumor_peripheral_blood CPT0374940002 51774116-cdbd-4aa9-ac9b-acf207f1b92a_wxs_gdc_realn.bam 32868413019 BAM harmonized CPTAC3 d55d74b0-9368-4db1-ad56-d5a2bfa515bb 1601648b4cab26bce48d2a6097dd6529 { 'aliquot_tag': 'ALQ_e341d826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06960.MethArray.Green.Tpb C3L-06960 AML Methylation Array tumor_peripheral_blood CPT0391970002 205707890036_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 fc35487c-69cc-410a-aea6-0593173b5192 4a5ba335a0851b9698892f24e59cc637 { 'aliquot_tag': 'ALQ_e3539f63', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06960.MethArray.Red.Tpb C3L-06960 AML Methylation Array tumor_peripheral_blood CPT0391970002 205707890036_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 065201d5-0aa5-4ff3-ab51-bacb49408051 da6b8ea593f2c6148449a4ee3763ef38 { 'aliquot_tag': 'ALQ_e3539f63', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06960.miRNA-Seq.Tpb C3L-06960 AML miRNA-Seq tumor_peripheral_blood CPT0391980002 220125_UNC32-K00270_0311_AHMNYYBBXY_AGTCAA_S25_L002_R1_001.unaln.bam 294440865 BAM unaligned CPTAC3 1b06ea8c-c156-4bed-8714-bc9434fe390f 2aef91b1aa6645da93269690bedeb042 { 'aliquot_tag': 'ALQ_610308b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06960.RNA-Seq.R1_L002.Tpb C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGCATTCT-CTAGCTTG_S7_L002_R1_001.fastq.gz 3385464526 FASTQ R1_L002 unaligned CPTAC3 15059745-078d-4e41-a58e-3aabce6b8e30 df4e67d43335f4dd8f162796b91e5111 { 'aliquot_tag': 'ALQ_610308b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06960.RNA-Seq.R2_L002.Tpb C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGCATTCT-CTAGCTTG_S7_L002_R2_001.fastq.gz 3595422587 FASTQ R2_L002 unaligned CPTAC3 d4495785-79a6-4be9-a9eb-1d45af1c84a3 950d67f187a0d45e22be7e9a07b163fa { 'aliquot_tag': 'ALQ_610308b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06960.miRNA-Seq.Tpb.hg38 C3L-06960 AML miRNA-Seq tumor_peripheral_blood CPT0391980002 9efba198-49e6-4e3e-a632-fe36814c7336_mirnaseq_gdc_realn.bam 306803172 BAM harmonized CPTAC3 d835b66e-f355-4118-bee8-260ff7baa760 e3b78b76b14bb86a35fb80a6b977b3d4 { 'aliquot_tag': 'ALQ_610308b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06960.RNA-Seq.chimeric.Tpb.hg38 C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 cfe43186-751d-4fc4-b683-82492f31de2b.rna_seq.chimeric.gdc_realn.bam 347462824 BAM chimeric harmonized CPTAC3 94ae252f-4412-4e35-b527-d3766256ab59 78686b235db61c8ce30912fa811c6a3b { 'aliquot_tag': 'ALQ_610308b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06960.RNA-Seq.genomic.Tpb.hg38 C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 cfe43186-751d-4fc4-b683-82492f31de2b.rna_seq.genomic.gdc_realn.bam 7033891116 BAM genomic harmonized CPTAC3 66d47de4-8611-4a22-b172-b8d547c8e63e 62eb7bce53d2f7ea72506473704f679a { 'aliquot_tag': 'ALQ_610308b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06960.RNA-Seq.R1_L002.Tpb C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGCATTCT-CTAGCTTG_S7_L002_R1_001.fastq.gz 3385464526 FASTQ R1_L002 unaligned CPTAC3 15059745-078d-4e41-a58e-3aabce6b8e30 df4e67d43335f4dd8f162796b91e5111 { 'aliquot_tag': 'ALQ_610308b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L002' } +C3L-06960.RNA-Seq.R2_L002.Tpb C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGCATTCT-CTAGCTTG_S7_L002_R2_001.fastq.gz 3595422587 FASTQ R2_L002 unaligned CPTAC3 d4495785-79a6-4be9-a9eb-1d45af1c84a3 950d67f187a0d45e22be7e9a07b163fa { 'aliquot_tag': 'ALQ_610308b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L002' } +C3L-06960.RNA-Seq.transcriptome.Tpb.hg38 C3L-06960 AML RNA-Seq tumor_peripheral_blood CPT0391980002 cfe43186-751d-4fc4-b683-82492f31de2b.rna_seq.transcriptome.gdc_realn.bam 8446428278 BAM transcriptome harmonized CPTAC3 231bfa39-0ed8-4fca-8ca5-f06631a04f4f 17ed3005a7f0b5afbbed694988ae34d0 { 'aliquot_tag': 'ALQ_610308b2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06960.WGS.Nbc C3L-06960 AML WGS buccal_normal CPT0391930002 CPT0391930002.WholeGenome.RP-2158.bam 45097619411 BAM aligned CPTAC3 47fd7127-6985-4f77-a54a-7a4581074f39 fb739ee9c131b8e8c7e8fbb8d7d2eb0f { 'aliquot_tag': 'ALQ_16d339a3', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06960.WGS.Nbc.hg38 C3L-06960 AML WGS buccal_normal CPT0391930002 46a69e2f-7525-48ee-9e1e-460646c051a1_wgs_gdc_realn.bam 133034482233 BAM harmonized CPTAC3 829aaac7-f4bf-464c-8823-3a474e550f29 1e919bbd80afed0c6831305f27f597b8 { 'aliquot_tag': 'ALQ_16d339a3', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06960.WGS.Tpb C3L-06960 AML WGS tumor_peripheral_blood CPT0391970002 CPT0391970002.WholeGenome.RP-2158.bam 44778837234 BAM aligned CPTAC3 edafa772-9365-4baa-9c34-ea1e72f8bab3 32ebc1360d924a286337a2c9a57dd5ab { 'aliquot_tag': 'ALQ_e3539f63', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06960.WGS.Tpb.hg38 C3L-06960 AML WGS tumor_peripheral_blood CPT0391970002 cd006b43-eab0-4ed3-8ab8-9933f81a8bba_wgs_gdc_realn.bam 131643530554 BAM harmonized CPTAC3 71fada9d-8485-4d3a-bd18-413e4a5ccd49 a8a87130f553828b37f4f79deead2f9b { 'aliquot_tag': 'ALQ_e3539f63', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06960.WXS.Nbc C3L-06960 AML WXS buccal_normal CPT0391930002 CPT0391930002.WholeExome.RP-1303.bam 28193236196 BAM aligned CPTAC3 f35c619d-8504-429e-8a9a-e0580110d06f 7fa0ed67d76c39156918290b57b3b4dc { 'aliquot_tag': 'ALQ_16d339a3', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06960.WXS.Nbc.hg38 C3L-06960 AML WXS buccal_normal CPT0391930002 46a69e2f-7525-48ee-9e1e-460646c051a1_wxs_gdc_realn.bam 38170724026 BAM harmonized CPTAC3 08a63ff1-95e7-4eb4-9a5e-51bff51f2b51 cb62cee1bb6111566a28fc732f214faa { 'aliquot_tag': 'ALQ_16d339a3', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06960.WXS.Tpb C3L-06960 AML WXS tumor_peripheral_blood CPT0391970002 CPT0391970002.WholeExome.RP-1303.bam 22943212472 BAM aligned CPTAC3 bedfbabf-373f-4507-85ac-ec986c655a85 71757f1a37b1427c614b4c2f196fd0b1 { 'aliquot_tag': 'ALQ_e3539f63', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06960.WXS.Tpb.hg38 C3L-06960 AML WXS tumor_peripheral_blood CPT0391970002 cd006b43-eab0-4ed3-8ab8-9933f81a8bba_wxs_gdc_realn.bam 32113200802 BAM harmonized CPTAC3 38d40850-2603-450c-8477-d3744bf24f22 840f7033b7b949dc8cbba73180b0482b { 'aliquot_tag': 'ALQ_e3539f63', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06981.MethArray.Green.Tpb C3L-06981 AML Methylation Array tumor_peripheral_blood CPT0404530002 205987770157_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 fbbd0ef4-f1e2-4205-b713-adfdeaa13e5d 26377aa1c3838e7760d8901fe5ca8e23 { 'aliquot_tag': 'ALQ_4807a09d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06981.MethArray.Red.Tpb C3L-06981 AML Methylation Array tumor_peripheral_blood CPT0404530002 205987770157_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 80f8cfe6-44cd-47cb-8b50-cb90f29585bc 5d65d8e3f3c490bd9a4147e1f7bcade8 { 'aliquot_tag': 'ALQ_4807a09d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06981.miRNA-Seq.Tpb C3L-06981 AML miRNA-Seq tumor_peripheral_blood CPT0404510002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACGAT_S3_L003_R1_001.unaln.bam 229303529 BAM unaligned CPTAC3 f87581fa-f6e4-4cc0-8e38-d8ac74216084 d9b59304f418397b0daefe093a893f59 { 'aliquot_tag': 'ALQ_32c7f3fd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06981.RNA-Seq.R1_L007.Tpb C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATCTCG-ATCTTAGT_S26_L007_R1_001.fastq.gz 3818718609 FASTQ R1_L007 unaligned CPTAC3 11b4e608-a77f-4c41-9687-928b46e0844a 48ae34d0d7f477a69b8af6db0af942d6 { 'aliquot_tag': 'ALQ_32c7f3fd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06981.RNA-Seq.R2_L007.Tpb C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATCTCG-ATCTTAGT_S26_L007_R2_001.fastq.gz 4026831718 FASTQ R2_L007 unaligned CPTAC3 e6c8a6fe-6bba-4ed2-aec5-ba81545f6a4f 0deb1741f4f9ed79b8769e961449bbc8 { 'aliquot_tag': 'ALQ_32c7f3fd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06981.miRNA-Seq.Tpb.hg38 C3L-06981 AML miRNA-Seq tumor_peripheral_blood CPT0404510002 b381ae91-9163-4d85-b2eb-1846e2d1f048_mirnaseq_gdc_realn.bam 257635643 BAM harmonized CPTAC3 93e07315-0266-4761-a2ee-32ae02370f90 ced26ce085439b6315076ee7f585f18b { 'aliquot_tag': 'ALQ_32c7f3fd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06981.RNA-Seq.chimeric.Tpb.hg38 C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 dbd046c5-b1ae-480c-b1b1-a8892f2b8757.rna_seq.chimeric.gdc_realn.bam 475251665 BAM chimeric harmonized CPTAC3 3fda4ed6-7d88-4de4-990b-0010dc7a0bbf 42a5c2cd1e15f169d0920bde0d3848bb { 'aliquot_tag': 'ALQ_32c7f3fd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06981.RNA-Seq.genomic.Tpb.hg38 C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 dbd046c5-b1ae-480c-b1b1-a8892f2b8757.rna_seq.genomic.gdc_realn.bam 7572644391 BAM genomic harmonized CPTAC3 1c1b4b23-bc6b-46e9-b814-531b57e18dec 5438668bc5c1cd7fc366a7daa5346668 { 'aliquot_tag': 'ALQ_32c7f3fd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06981.RNA-Seq.R1_L007.Tpb C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATCTCG-ATCTTAGT_S26_L007_R1_001.fastq.gz 3818718609 FASTQ R1_L007 unaligned CPTAC3 11b4e608-a77f-4c41-9687-928b46e0844a 48ae34d0d7f477a69b8af6db0af942d6 { 'aliquot_tag': 'ALQ_32c7f3fd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L007' } +C3L-06981.RNA-Seq.R2_L007.Tpb C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATCTCG-ATCTTAGT_S26_L007_R2_001.fastq.gz 4026831718 FASTQ R2_L007 unaligned CPTAC3 e6c8a6fe-6bba-4ed2-aec5-ba81545f6a4f 0deb1741f4f9ed79b8769e961449bbc8 { 'aliquot_tag': 'ALQ_32c7f3fd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L007' } +C3L-06981.RNA-Seq.transcriptome.Tpb.hg38 C3L-06981 AML RNA-Seq tumor_peripheral_blood CPT0404510002 dbd046c5-b1ae-480c-b1b1-a8892f2b8757.rna_seq.transcriptome.gdc_realn.bam 7472232767 BAM transcriptome harmonized CPTAC3 2d1ad15d-24f2-4350-8be6-13ff37e17077 d4b10e84f635fe59813f01a09338938c { 'aliquot_tag': 'ALQ_32c7f3fd', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06981.WGS.Nbc C3L-06981 AML WGS buccal_normal CPT0403380001 CPT0403380001.WholeGenome.RP-2158.bam 51774027262 BAM aligned CPTAC3 79917886-548c-4d9f-8449-270f8fd12817 b7d1046624fc31dc6288eb6db0cbbfb7 { 'aliquot_tag': 'ALQ_b5201da5', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06981.WGS.Nbc.hg38 C3L-06981 AML WGS buccal_normal CPT0403380001 4c79c53a-2718-4547-a290-048841fd0614_wgs_gdc_realn.bam 149538484177 BAM harmonized CPTAC3 7ab67fa3-1ce9-4d82-920c-c2e87528b007 b6996b4a4186a97c835ac7cb66e9349d { 'aliquot_tag': 'ALQ_b5201da5', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06981.WGS.Tpb C3L-06981 AML WGS tumor_peripheral_blood CPT0404530002 CPT0404530002.WholeGenome.RP-2158.bam 46027939419 BAM aligned CPTAC3 28cda7b6-c518-491a-92f7-18a537a4d526 a4a5145b96f9b69c4bf48657bcb50891 { 'aliquot_tag': 'ALQ_4807a09d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06981.WGS.Tpb.hg38 C3L-06981 AML WGS tumor_peripheral_blood CPT0404530002 8f00074a-8287-4c6c-8cff-42c27aac2504_wgs_gdc_realn.bam 135833195776 BAM harmonized CPTAC3 9ec0d8c2-3a7d-4579-b850-91811dc93dfd 25d76e9b674715af46ac5de11b2c5495 { 'aliquot_tag': 'ALQ_4807a09d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06981.WXS.Nbc C3L-06981 AML WXS buccal_normal CPT0403380001 CPT0403380001.WholeExome.RP-1303.bam 31985634267 BAM aligned CPTAC3 147420c9-e671-4284-b55c-c213ff21007f c3516fe041974a47838b41fccf8e2572 { 'aliquot_tag': 'ALQ_b5201da5', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06981.WXS.Nbc.hg38 C3L-06981 AML WXS buccal_normal CPT0403380001 4c79c53a-2718-4547-a290-048841fd0614_wxs_gdc_realn.bam 43986216038 BAM harmonized CPTAC3 77f8c27e-925e-41f1-b90f-d9045b0e62ff 6962e08de759e39fbbfd7882afe5a2c6 { 'aliquot_tag': 'ALQ_b5201da5', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06981.WXS.Tpb C3L-06981 AML WXS tumor_peripheral_blood CPT0404530002 CPT0404530002.WholeExome.RP-1303.bam 30729052532 BAM aligned CPTAC3 c9a78684-4889-4706-ae5e-66988e0c3ae7 f44c041e429f0a77405b890f1e3ffa6a { 'aliquot_tag': 'ALQ_4807a09d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06982.RNA-Seq.R1_L006.Tpb C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCAATGCA-GGAACGTT_S23_L006_R1_001.fastq.gz 3474697330 FASTQ R1_L006 unaligned CPTAC3 da3e229b-d868-4f5f-b075-be1171998087 915e62f549c55f9270f57ec862d913f3 { 'aliquot_tag': 'ALQ_be3b5a88', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06982.RNA-Seq.R2_L006.Tpb C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCAATGCA-GGAACGTT_S23_L006_R2_001.fastq.gz 3682404957 FASTQ R2_L006 unaligned CPTAC3 29246746-6940-47e6-b599-3f13ef906ad9 159a59128cf9c0e5c9001a04f23b32a0 { 'aliquot_tag': 'ALQ_be3b5a88', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06981.WXS.Tpb.hg38 C3L-06981 AML WXS tumor_peripheral_blood CPT0404530002 8f00074a-8287-4c6c-8cff-42c27aac2504_wxs_gdc_realn.bam 43056405894 BAM harmonized CPTAC3 98fcca5b-037d-4c84-b645-694cb68bf00b 7339b81a2694f78eb99d91732ea27c74 { 'aliquot_tag': 'ALQ_4807a09d', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06982.MethArray.Green.Tpb C3L-06982 AML Methylation Array tumor_peripheral_blood CPT0404410002 205707890143_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 34111be2-10dc-4704-9ae0-2fcebcc99590 a0dfd8f2007010962557b07cb69a7f2b { 'aliquot_tag': 'ALQ_f99b2058', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06982.MethArray.Red.Tpb C3L-06982 AML Methylation Array tumor_peripheral_blood CPT0404410002 205707890143_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 470adee3-db3c-4ae5-b1b7-5d8e1dc9a29a 79d3da44d194100cb3039d662af04da4 { 'aliquot_tag': 'ALQ_f99b2058', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06982.miRNA-Seq.Tpb C3L-06982 AML miRNA-Seq tumor_peripheral_blood CPT0404420002 220505_UNC32-K00270_0319_AHMV2KBBXY_CAAAAG_S2_L003_R1_001.unaln.bam 191863960 BAM unaligned CPTAC3 22695312-0681-458a-941d-d41503e39b0e c079bd6df4686e9c2259bd1aaa04566f { 'aliquot_tag': 'ALQ_be3b5a88', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06982.RNA-Seq.chimeric.Tpb.hg38 C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 393b1cc5-7758-4a78-b930-778147aeaf97.rna_seq.chimeric.gdc_realn.bam 662776335 BAM chimeric harmonized CPTAC3 5fcd0d16-b92a-47f8-97b7-7257b6d4ae80 176b5616cda8ba8c67a39ca26713dafd { 'aliquot_tag': 'ALQ_be3b5a88', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06982.RNA-Seq.genomic.Tpb.hg38 C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 393b1cc5-7758-4a78-b930-778147aeaf97.rna_seq.genomic.gdc_realn.bam 6920066479 BAM genomic harmonized CPTAC3 2e3c51fa-c9b5-4611-a5bf-ebabbc183fd7 761f17607cea9dbc955c62687e61634b { 'aliquot_tag': 'ALQ_be3b5a88', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06982.RNA-Seq.R1_L006.Tpb C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCAATGCA-GGAACGTT_S23_L006_R1_001.fastq.gz 3474697330 FASTQ R1_L006 unaligned CPTAC3 da3e229b-d868-4f5f-b075-be1171998087 915e62f549c55f9270f57ec862d913f3 { 'aliquot_tag': 'ALQ_be3b5a88', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L006' } +C3L-06982.RNA-Seq.R2_L006.Tpb C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCAATGCA-GGAACGTT_S23_L006_R2_001.fastq.gz 3682404957 FASTQ R2_L006 unaligned CPTAC3 29246746-6940-47e6-b599-3f13ef906ad9 159a59128cf9c0e5c9001a04f23b32a0 { 'aliquot_tag': 'ALQ_be3b5a88', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L006' } +C3L-06982.RNA-Seq.transcriptome.Tpb.hg38 C3L-06982 AML RNA-Seq tumor_peripheral_blood CPT0404420002 393b1cc5-7758-4a78-b930-778147aeaf97.rna_seq.transcriptome.gdc_realn.bam 7270094702 BAM transcriptome harmonized CPTAC3 149e633c-0976-40b5-8488-8d382183f5bd a6555fcf5a31f7164e82cd7f11f7e408 { 'aliquot_tag': 'ALQ_be3b5a88', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06982.WGS.Nbc C3L-06982 AML WGS buccal_normal CPT0403350001 CPT0403350001.WholeGenome.RP-2158.bam 46684314458 BAM aligned CPTAC3 f49e23a8-9b21-4874-b42e-3f3bcbf308de b5918769c1d35324a1512f445c20ce44 { 'aliquot_tag': 'ALQ_4db0d914', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06982.WGS.Nbc.hg38 C3L-06982 AML WGS buccal_normal CPT0403350001 121b27dd-434f-47df-9e3e-e161c746cc01_wgs_gdc_realn.bam 136049604152 BAM harmonized CPTAC3 7f6aee43-68f8-4ddb-aded-5a52920ee9d4 0ff3cfeb93139a0d8d19bbc51bed9f16 { 'aliquot_tag': 'ALQ_4db0d914', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06982.WGS.Tpb C3L-06982 AML WGS tumor_peripheral_blood CPT0404410002 CPT0404410002.WholeGenome.RP-2158.bam 50422689910 BAM aligned CPTAC3 213f491e-94df-46a7-bffb-f949354da880 34f1113140fc37ba83e32d6ca15257f5 { 'aliquot_tag': 'ALQ_f99b2058', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06982.WGS.Tpb.hg38 C3L-06982 AML WGS tumor_peripheral_blood CPT0404410002 7ef5b7fc-04af-418d-9164-eceda84feba7_wgs_gdc_realn.bam 151091836312 BAM harmonized CPTAC3 1bf7909e-23fb-418e-b3a8-957be0b608ba d0aacf2a8e42e37e7bcee2982afb095c { 'aliquot_tag': 'ALQ_f99b2058', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06982.WXS.Nbc C3L-06982 AML WXS buccal_normal CPT0403350001 CPT0403350001.WholeExome.RP-1303.bam 23770460733 BAM aligned CPTAC3 b1c89d93-d795-40cf-ae61-b2371e550731 bd27425af93f531a377c74e97d1ac3c4 { 'aliquot_tag': 'ALQ_4db0d914', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06982.WXS.Nbc.hg38 C3L-06982 AML WXS buccal_normal CPT0403350001 121b27dd-434f-47df-9e3e-e161c746cc01_wxs_gdc_realn.bam 32601152333 BAM harmonized CPTAC3 1b3e1f0d-f82b-40b7-a91f-cf1a46376849 afc5d58ed88c35c4aca24049ecf30f29 { 'aliquot_tag': 'ALQ_4db0d914', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06982.WXS.Tpb C3L-06982 AML WXS tumor_peripheral_blood CPT0404410002 CPT0404410002.WholeExome.RP-1303.bam 29613990295 BAM aligned CPTAC3 45de0859-9f0c-4fc6-abf4-82013e4ed41a 062ce6c8d9a6a91cb6803633c339faa1 { 'aliquot_tag': 'ALQ_f99b2058', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06982.WXS.Tpb.hg38 C3L-06982 AML WXS tumor_peripheral_blood CPT0404410002 7ef5b7fc-04af-418d-9164-eceda84feba7_wxs_gdc_realn.bam 41263998537 BAM harmonized CPTAC3 dde4d746-46a9-41bd-a9df-9e77ce0a2f49 117a34b0c1c8a3ba4453d069956d1bb2 { 'aliquot_tag': 'ALQ_f99b2058', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06983.MethArray.Green.Tpb C3L-06983 AML Methylation Array tumor_peripheral_blood CPT0408640002 205987770157_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 60a67d40-e23e-4b1c-9bb4-c9aedd0fd6a1 dffc563a258aef5a08282112c4b1e0b5 { 'aliquot_tag': 'ALQ_bb136457', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06983.MethArray.Red.Tpb C3L-06983 AML Methylation Array tumor_peripheral_blood CPT0408640002 205987770157_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 14d39412-7c6b-4207-903d-090327d3a5f1 e521690f539c04475d55f4734b1fcb7c { 'aliquot_tag': 'ALQ_bb136457', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06983.miRNA-Seq.Tpb C3L-06983 AML miRNA-Seq tumor_peripheral_blood CPT0408650002 220125_UNC32-K00270_0311_AHMNYYBBXY_CAGGCG_S5_L003_R1_001.unaln.bam 263936005 BAM unaligned CPTAC3 73b39b1a-caa4-4477-9e18-8e7efa093861 9db8eebbc5f91be46ff8eb8db23c4445 { 'aliquot_tag': 'ALQ_86734de7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06983.RNA-Seq.R1_L007.Tpb C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 211207_UNC32-K00270_0306_BHMW5YBBXY_AACAGGTT-ATACCAAG_S25_L007_R1_001.fastq.gz 3740492542 FASTQ R1_L007 unaligned CPTAC3 26518143-efc1-4a56-aa1e-c242a0f31641 1906e395a4a1964bf8ec45440083ebc2 { 'aliquot_tag': 'ALQ_86734de7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06983.RNA-Seq.R2_L007.Tpb C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 211207_UNC32-K00270_0306_BHMW5YBBXY_AACAGGTT-ATACCAAG_S25_L007_R2_001.fastq.gz 3943177791 FASTQ R2_L007 unaligned CPTAC3 4642bc52-9725-4985-98d7-97a3c9ba89f5 7f0e78b662597649016957053fb5ac83 { 'aliquot_tag': 'ALQ_86734de7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06983.miRNA-Seq.Tpb.hg38 C3L-06983 AML miRNA-Seq tumor_peripheral_blood CPT0408650002 6c55e645-f645-4514-bd0d-a47e4022b00f_mirnaseq_gdc_realn.bam 289906526 BAM harmonized CPTAC3 a8258068-d94b-4eed-bc2b-43677e8bf342 a1186bbb5cfa49267712919250fc742e { 'aliquot_tag': 'ALQ_86734de7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06983.RNA-Seq.chimeric.Tpb.hg38 C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 8cf54279-7bab-4f00-ac30-91f224c7a9bb.rna_seq.chimeric.gdc_realn.bam 512264858 BAM chimeric harmonized CPTAC3 5e256964-5c81-4af4-82af-d8221ffec33c b10acab1df8e133bd9b31a6f87f8436c { 'aliquot_tag': 'ALQ_86734de7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06983.RNA-Seq.genomic.Tpb.hg38 C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 8cf54279-7bab-4f00-ac30-91f224c7a9bb.rna_seq.genomic.gdc_realn.bam 7179916641 BAM genomic harmonized CPTAC3 b5fca9d7-8f46-4703-963d-88fe9f1cd1a1 b8e8831863dd6855852e561249db4928 { 'aliquot_tag': 'ALQ_86734de7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06983.RNA-Seq.R1_L007.Tpb C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 211207_UNC32-K00270_0306_BHMW5YBBXY_AACAGGTT-ATACCAAG_S25_L007_R1_001.fastq.gz 3740492542 FASTQ R1_L007 unaligned CPTAC3 26518143-efc1-4a56-aa1e-c242a0f31641 1906e395a4a1964bf8ec45440083ebc2 { 'aliquot_tag': 'ALQ_86734de7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L007' } +C3L-06983.RNA-Seq.R2_L007.Tpb C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 211207_UNC32-K00270_0306_BHMW5YBBXY_AACAGGTT-ATACCAAG_S25_L007_R2_001.fastq.gz 3943177791 FASTQ R2_L007 unaligned CPTAC3 4642bc52-9725-4985-98d7-97a3c9ba89f5 7f0e78b662597649016957053fb5ac83 { 'aliquot_tag': 'ALQ_86734de7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L007' } +C3L-06983.RNA-Seq.transcriptome.Tpb.hg38 C3L-06983 AML RNA-Seq tumor_peripheral_blood CPT0408650002 8cf54279-7bab-4f00-ac30-91f224c7a9bb.rna_seq.transcriptome.gdc_realn.bam 8323069052 BAM transcriptome harmonized CPTAC3 c64f2ff7-bdd1-4a06-98ef-45db09c9fe24 2037822cd3f00c628b215ac5ceaa11a0 { 'aliquot_tag': 'ALQ_86734de7', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06983.WGS.Nbc C3L-06983 AML WGS buccal_normal CPT0408610001 CPT0408610001.WholeGenome.RP-2158.bam 58946812018 BAM aligned CPTAC3 4a5647d3-8d56-4b44-81ae-0aeb356ec70a 6249e7c5e87d4ac3372e628f8c639f95 { 'aliquot_tag': 'ALQ_eafaba9d', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06983.WGS.Nbc.hg38 C3L-06983 AML WGS buccal_normal CPT0408610001 64b0012c-ff3b-4930-879c-11ad70615533_wgs_gdc_realn.bam 172535418672 BAM harmonized CPTAC3 69d8818f-a69e-4afa-a106-5bcbeece0a49 d31db3447fcf4c04a2aa6dd14b60b93e { 'aliquot_tag': 'ALQ_eafaba9d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06983.WGS.Tpb C3L-06983 AML WGS tumor_peripheral_blood CPT0408640002 CPT0408640002.WholeGenome.RP-2158.bam 43651351728 BAM aligned CPTAC3 4cbc9bb3-6efd-4e41-a00d-9dc5bd26cdf9 c1fdb735c7d381e2e6022ea559afe100 { 'aliquot_tag': 'ALQ_bb136457', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06983.WGS.Tpb.hg38 C3L-06983 AML WGS tumor_peripheral_blood CPT0408640002 e5b9c3e2-7a77-44c7-a84a-637c3e7fcb46_wgs_gdc_realn.bam 132091769285 BAM harmonized CPTAC3 1e2921db-5243-4ee6-8d9b-07ecef59fa12 24d7bee8a728a3cc667ad4afa10ae3b7 { 'aliquot_tag': 'ALQ_bb136457', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06983.WXS.Nbc C3L-06983 AML WXS buccal_normal CPT0408610001 CPT0408610001.WholeExome.RP-1303.bam 25711691906 BAM aligned CPTAC3 87f37cd9-f411-405b-a754-45b1d785ff5b 9a1b7b543a43a13f4ec61b9d0fafa140 { 'aliquot_tag': 'ALQ_eafaba9d', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06983.WXS.Nbc.hg38 C3L-06983 AML WXS buccal_normal CPT0408610001 64b0012c-ff3b-4930-879c-11ad70615533_wxs_gdc_realn.bam 37245222092 BAM harmonized CPTAC3 65286f62-a5d2-444d-b95f-d650dc8a2f38 ef4737c88010d6d77a64c737ff0925e0 { 'aliquot_tag': 'ALQ_eafaba9d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06983.WXS.Tpb C3L-06983 AML WXS tumor_peripheral_blood CPT0408640002 CPT0408640002.WholeExome.RP-1303.bam 24226740827 BAM aligned CPTAC3 79ed1bca-c9a3-4aad-800f-16033f63b652 92ce5fcd6c3b11b28e378e67e22055ad { 'aliquot_tag': 'ALQ_bb136457', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06983.WXS.Tpb.hg38 C3L-06983 AML WXS tumor_peripheral_blood CPT0408640002 e5b9c3e2-7a77-44c7-a84a-637c3e7fcb46_wxs_gdc_realn.bam 33458404342 BAM harmonized CPTAC3 468b389b-7174-45a6-b3ce-2db7d0c4eca8 f35ba090083c779adcec20f4cfa64b3c { 'aliquot_tag': 'ALQ_bb136457', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06984.MethArray.Green.Tpb C3L-06984 AML Methylation Array tumor_peripheral_blood CPT0408880002 205707890036_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 fdf41040-4ef5-4b00-9682-29b85832335c 5efeb9aca6ded1cbca814b07f2e1bc5d { 'aliquot_tag': 'ALQ_44e9e826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06984.MethArray.Red.Tpb C3L-06984 AML Methylation Array tumor_peripheral_blood CPT0408880002 205707890036_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 731b6909-36eb-421b-8e1f-02905bfd4152 84ce281b8b85c8b98ac0c7431dc51326 { 'aliquot_tag': 'ALQ_44e9e826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06984.miRNA-Seq.Tpb C3L-06984 AML miRNA-Seq tumor_peripheral_blood CPT0408890002 220125_UNC32-K00270_0311_AHMNYYBBXY_CACTCA_S4_L003_R1_001.unaln.bam 261397418 BAM unaligned CPTAC3 01e324ab-cb07-4257-8a74-d0758252f222 05caa0e68becc8be961413f8bf483635 { 'aliquot_tag': 'ALQ_7989c196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06984.RNA-Seq.R1_L007.Tpb C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCTCTA-GCTCCGAC_S27_L007_R1_001.fastq.gz 3897342018 FASTQ R1_L007 unaligned CPTAC3 c9020348-4ac7-45b2-8b26-0f3600eea6be c093b306674e0a1d60d94ed690b33c95 { 'aliquot_tag': 'ALQ_7989c196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-06984.RNA-Seq.R2_L007.Tpb C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCTCTA-GCTCCGAC_S27_L007_R2_001.fastq.gz 4137799210 FASTQ R2_L007 unaligned CPTAC3 d80c3794-a9dc-4b1b-8acc-12c57ffbe287 6e16f41969771d4ae81ee98cf509ed4f { 'aliquot_tag': 'ALQ_7989c196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06984.miRNA-Seq.Tpb.hg38 C3L-06984 AML miRNA-Seq tumor_peripheral_blood CPT0408890002 3dfd641e-04ef-40fa-b16d-cdf8326f1aea_mirnaseq_gdc_realn.bam 293238380 BAM harmonized CPTAC3 eb2caf85-55bb-4e3f-ad3e-64e02faa0bbf 2ce269753265a719623d5c0dc6370588 { 'aliquot_tag': 'ALQ_7989c196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06984.RNA-Seq.chimeric.Tpb.hg38 C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 27eb66a0-2c7e-469f-a0f7-687cd8989044.rna_seq.chimeric.gdc_realn.bam 660918515 BAM chimeric harmonized CPTAC3 4ed47b0a-954e-43bb-b909-f6bdb58c2fe7 bc669a727d3c46bcd4cf9c608fad3143 { 'aliquot_tag': 'ALQ_7989c196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06984.RNA-Seq.genomic.Tpb.hg38 C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 27eb66a0-2c7e-469f-a0f7-687cd8989044.rna_seq.genomic.gdc_realn.bam 7941234065 BAM genomic harmonized CPTAC3 eaad2437-3ea7-4fb8-9e41-c96bf66dbaa4 78ecf1022c8280eddfef974791b258e6 { 'aliquot_tag': 'ALQ_7989c196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06984.RNA-Seq.R1_L007.Tpb C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCTCTA-GCTCCGAC_S27_L007_R1_001.fastq.gz 3897342018 FASTQ R1_L007 unaligned CPTAC3 c9020348-4ac7-45b2-8b26-0f3600eea6be c093b306674e0a1d60d94ed690b33c95 { 'aliquot_tag': 'ALQ_7989c196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L007' } +C3L-06984.RNA-Seq.R2_L007.Tpb C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCTCTA-GCTCCGAC_S27_L007_R2_001.fastq.gz 4137799210 FASTQ R2_L007 unaligned CPTAC3 d80c3794-a9dc-4b1b-8acc-12c57ffbe287 6e16f41969771d4ae81ee98cf509ed4f { 'aliquot_tag': 'ALQ_7989c196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L007' } +C3L-06984.RNA-Seq.transcriptome.Tpb.hg38 C3L-06984 AML RNA-Seq tumor_peripheral_blood CPT0408890002 27eb66a0-2c7e-469f-a0f7-687cd8989044.rna_seq.transcriptome.gdc_realn.bam 8485677822 BAM transcriptome harmonized CPTAC3 99fcf827-b565-44ce-9eb3-944cc3dd7cc1 d97066ca73e05f7400ca7c8b7ba8428c { 'aliquot_tag': 'ALQ_7989c196', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06984.WGS.Nbc C3L-06984 AML WGS buccal_normal CPT0408850001 CPT0408850001.WholeGenome.RP-2158.bam 54868221872 BAM aligned CPTAC3 32329ee0-f040-4c1b-87c1-4899f4f455ba 26afa3791dd669298295c1c08b33c17e { 'aliquot_tag': 'ALQ_25707d2d', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06984.WGS.Nbc.hg38 C3L-06984 AML WGS buccal_normal CPT0408850001 b0c55a80-01d8-42eb-8047-5299de48ffc8_wgs_gdc_realn.bam 479825047073 BAM harmonized CPTAC3 65b123d9-9d59-4697-82bf-9db318649bb3 d73a5a94482c3d808dd68bad4809547a { 'aliquot_tag': 'ALQ_25707d2d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06984.WGS.Tpb C3L-06984 AML WGS tumor_peripheral_blood CPT0408880002 CPT0408880002.WholeGenome.RP-2158.bam 51255855433 BAM aligned CPTAC3 9a2129d2-dd45-42e9-afc1-c2f76f47948d 95281e57ff87149adc9c7bd4496c2a11 { 'aliquot_tag': 'ALQ_44e9e826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06984.WGS.Tpb.hg38 C3L-06984 AML WGS tumor_peripheral_blood CPT0408880002 a655b7cc-f1c6-4a8c-8230-ff95229f45ac_wgs_gdc_realn.bam 155235972975 BAM harmonized CPTAC3 dc89ef04-c297-4432-a134-46486e9e8dcb 1297c26a3c9507d48428d346696a2665 { 'aliquot_tag': 'ALQ_44e9e826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-06984.WXS.Nbc C3L-06984 AML WXS buccal_normal CPT0408850001 CPT0408850001.WholeExome.RP-1303.bam 16902132775 BAM aligned CPTAC3 fa5418a5-98fe-4ca8-bb49-bcdd0399d6e7 cdf9700e071f15e086d10001506975fe { 'aliquot_tag': 'ALQ_25707d2d', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-06984.WXS.Nbc.hg38 C3L-06984 AML WXS buccal_normal CPT0408850001 b0c55a80-01d8-42eb-8047-5299de48ffc8_wxs_gdc_realn.bam 23341344380 BAM harmonized CPTAC3 7810bf2c-1091-45bc-b9e5-9814def4ef7f 7e1980027802e6ebab9f4a915863d815 { 'aliquot_tag': 'ALQ_25707d2d', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-06984.WXS.Tpb C3L-06984 AML WXS tumor_peripheral_blood CPT0408880002 CPT0408880002.WholeExome.RP-1303.bam 19954273339 BAM aligned CPTAC3 4736dfe6-8512-4fca-97be-9a273fa9fa9c 45a0432baad43ef032d1c06f4836cfe1 { 'aliquot_tag': 'ALQ_44e9e826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-06984.WXS.Tpb.hg38 C3L-06984 AML WXS tumor_peripheral_blood CPT0408880002 a655b7cc-f1c6-4a8c-8230-ff95229f45ac_wxs_gdc_realn.bam 27834661525 BAM harmonized CPTAC3 699aab96-8cd5-480d-8c76-554d4d1a1ba8 ff2d0f6ae0d0864cbdb4024d97b1b43f { 'aliquot_tag': 'ALQ_44e9e826', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07012.MethArray.Green.Tbm C3L-07012 AML Methylation Array tumor_bone_marrow CPT0423540002 205987780101_R02C01_Grn.idat 13677888 IDAT Green NA CPTAC3 d95dfeff-b014-4513-b0b8-193e00312f1b 84271e6e832adff592abd6b9c2188c3a { 'aliquot_tag': 'ALQ_7da5457e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07012.MethArray.Red.Tbm C3L-07012 AML Methylation Array tumor_bone_marrow CPT0423540002 205987780101_R02C01_Red.idat 13677888 IDAT Red NA CPTAC3 f72d2e9d-be02-4b64-a9d0-37e60c859965 8d024f0dab3da114869404cfdd28822c { 'aliquot_tag': 'ALQ_7da5457e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-07012.miRNA-Seq.Tbm C3L-07012 AML miRNA-Seq tumor_bone_marrow CPT0423550002 220125_UNC32-K00270_0311_AHMNYYBBXY_GTGAAA_S39_L002_R1_001.unaln.bam 235075833 BAM unaligned CPTAC3 a4a4d331-60d0-4739-9e3d-6146c3fe2484 e4fc7081089f5d13ce52a52fc8f02b37 { 'aliquot_tag': 'ALQ_40c56cce', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-07012.RNA-Seq.R1_L004.Tbm C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCGTAGTG-AGACTTGG_S16_L004_R1_001.fastq.gz 3467313065 FASTQ R1_L004 unaligned CPTAC3 bed0b6b6-1024-4b88-9ccd-f4702700ff3f 262af42889c5c7338ef3ad2ced21910d { 'aliquot_tag': 'ALQ_40c56cce', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-07012.RNA-Seq.R2_L004.Tbm C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCGTAGTG-AGACTTGG_S16_L004_R2_001.fastq.gz 3692173513 FASTQ R2_L004 unaligned CPTAC3 7b57f8ce-1e4c-4f0d-9d81-370bb7a90774 6efeb34cad24bba2354c6156b49998bf { 'aliquot_tag': 'ALQ_40c56cce', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07012.miRNA-Seq.Tbm.hg38 C3L-07012 AML miRNA-Seq tumor_bone_marrow CPT0423550002 66e4b536-8c49-4045-af56-5d7fd1e686c6_mirnaseq_gdc_realn.bam 262654660 BAM harmonized CPTAC3 f2ec02b1-c561-4b1f-a5fb-2411dcf4f582 2ce644cf0fb8799b09f34159fb0dd376 { 'aliquot_tag': 'ALQ_40c56cce', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07012.RNA-Seq.chimeric.Tbm.hg38 C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 c0289d05-b599-4250-b81c-dcd759a15de4.rna_seq.chimeric.gdc_realn.bam 581682620 BAM chimeric harmonized CPTAC3 835b59f6-16e4-4694-9efe-b613382b72b9 3265d81b206d1701b5acb0431650df13 { 'aliquot_tag': 'ALQ_40c56cce', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07012.RNA-Seq.genomic.Tbm.hg38 C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 c0289d05-b599-4250-b81c-dcd759a15de4.rna_seq.genomic.gdc_realn.bam 6864057625 BAM genomic harmonized CPTAC3 f3e8149a-728b-4002-aacb-f008d74e1e12 11fd55b615621f3583c0de42404981ee { 'aliquot_tag': 'ALQ_40c56cce', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07012.RNA-Seq.R1_L004.Tbm C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCGTAGTG-AGACTTGG_S16_L004_R1_001.fastq.gz 3467313065 FASTQ R1_L004 unaligned CPTAC3 bed0b6b6-1024-4b88-9ccd-f4702700ff3f 262af42889c5c7338ef3ad2ced21910d { 'aliquot_tag': 'ALQ_40c56cce', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-07012.RNA-Seq.R2_L004.Tbm C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 211207_UNC32-K00270_0306_BHMW5YBBXY_TCGTAGTG-AGACTTGG_S16_L004_R2_001.fastq.gz 3692173513 FASTQ R2_L004 unaligned CPTAC3 7b57f8ce-1e4c-4f0d-9d81-370bb7a90774 6efeb34cad24bba2354c6156b49998bf { 'aliquot_tag': 'ALQ_40c56cce', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-07012.RNA-Seq.transcriptome.Tbm.hg38 C3L-07012 AML RNA-Seq tumor_bone_marrow CPT0423550002 c0289d05-b599-4250-b81c-dcd759a15de4.rna_seq.transcriptome.gdc_realn.bam 7885853369 BAM transcriptome harmonized CPTAC3 c615a597-fe45-4168-93c8-f89bba90ad81 3478d31eedd51f8428b3dcbc5927d55d { 'aliquot_tag': 'ALQ_40c56cce', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-07012.WGS.Tbm C3L-07012 AML WGS tumor_bone_marrow CPT0423540002 CPT0423540002.WholeGenome.RP-2158.bam 53577776151 BAM aligned CPTAC3 566f44d4-3504-485d-9299-afb0cf0dafe2 bbb11857af20d22d7fa85aa3ceda471d { 'aliquot_tag': 'ALQ_7da5457e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07012.WGS.Tbm.hg38 C3L-07012 AML WGS tumor_bone_marrow CPT0423540002 43982394-4fd8-4b39-88b0-fd5418fabda9_wgs_gdc_realn.bam 158689114737 BAM harmonized CPTAC3 9d5fa861-1cf3-4965-aacb-3ce82482133f 650e9f9324941a52c13f07ad12b7cb7d { 'aliquot_tag': 'ALQ_7da5457e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-07012.WXS.Nbc C3L-07012 AML WXS buccal_normal CPT0423600001 CPT0423600001.WholeExome.RP-1303.bam 23627108151 BAM aligned CPTAC3 2ed62278-6092-40fb-805a-f47cc0be10ae 6bdc0e9645a53f520d4ca4a61b96f1ef { 'aliquot_tag': 'ALQ_97b8c0aa', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-07012.WXS.Nbc.hg38 C3L-07012 AML WXS buccal_normal CPT0423600001 ec411e25-2a11-4cc9-aaea-806a5e34a08d_wxs_gdc_realn.bam 31960837320 BAM harmonized CPTAC3 64e2bdb1-f10f-420d-a03e-60e7d01af376 c8d08f26d7f1694118040e0aa3f142d4 { 'aliquot_tag': 'ALQ_97b8c0aa', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-07012.WXS.Tbm C3L-07012 AML WXS tumor_bone_marrow CPT0423540002 CPT0423540002.WholeExome.RP-1303.bam 30176565344 BAM aligned CPTAC3 12295d85-7214-4527-bf42-75fd211a8ca0 a842fa8dc630cb5dcc806920a2e64a92 { 'aliquot_tag': 'ALQ_7da5457e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-07013.RNA-Seq.R1_L004.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R1_001.fastq.gz 3609610481 FASTQ R1_L004 unaligned CPTAC3 17aeb355-fa4f-4ff5-9fd5-8d0e21aff2d3 edcba2beb1192a30c44f5a3a5a3d81cb { 'aliquot_tag': 'ALQ_c6511e60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-07013.RNA-Seq.R2_L004.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R2_001.fastq.gz 4145611122 FASTQ R2_L004 unaligned CPTAC3 1023c6f2-892a-4949-82ec-e92440e8f394 88e6d5177d9b119bd152105d68d25722 { 'aliquot_tag': 'ALQ_c6511e60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07012.WXS.Tbm.hg38 C3L-07012 AML WXS tumor_bone_marrow CPT0423540002 43982394-4fd8-4b39-88b0-fd5418fabda9_wxs_gdc_realn.bam 42024870132 BAM harmonized CPTAC3 6c2f3c3e-b9b1-4215-bece-7fbfaa266226 5105ab890684e1a94e5fed3d5ce9868f { 'aliquot_tag': 'ALQ_7da5457e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07013.MethArray.Green.Tbm C3L-07013 AML Methylation Array tumor_bone_marrow CPT0423640002 205987780101_R06C01_Grn.idat 13677888 IDAT Green NA CPTAC3 1b41e550-2296-40f0-baa3-646304b71e8e ad521768d7541689ccc9bfb71654a34f { 'aliquot_tag': 'ALQ_fb3137d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07013.MethArray.Red.Tbm C3L-07013 AML Methylation Array tumor_bone_marrow CPT0423640002 205987780101_R06C01_Red.idat 13677888 IDAT Red NA CPTAC3 d1850a58-d8d6-4985-b9db-c7b5fcfe95c3 eda100a14da59279e61e8e2f2d90896e { 'aliquot_tag': 'ALQ_fb3137d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07013.miRNA-Seq.Tbm C3L-07013 AML miRNA-Seq tumor_bone_marrow CPT0423650002 220505_UNC32-K00270_0319_AHMV2KBBXY_CCAACA_S4_L003_R1_001.unaln.bam 170562530 BAM unaligned CPTAC3 f49a134c-f0f2-4b94-b21a-78747ab82b9b 9ce1e07e2e4486cd6a56cd321024acad { 'aliquot_tag': 'ALQ_c6511e60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07013.RNA-Seq.chimeric.Tbm.hg38 C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 33252ff5-8c63-4e04-8b60-dbd637bde0c5.rna_seq.chimeric.gdc_realn.bam 74559440 BAM chimeric harmonized CPTAC3 6506be33-e425-4684-9851-eb0f0f9a65ae a6a4e699b4069978eaee57ccc5865a8c { 'aliquot_tag': 'ALQ_c6511e60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07013.RNA-Seq.genomic.Tbm.hg38 C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 33252ff5-8c63-4e04-8b60-dbd637bde0c5.rna_seq.genomic.gdc_realn.bam 9223432526 BAM genomic harmonized CPTAC3 70d345a0-0a2e-4c75-9920-14c36791d713 6080eaf2f266e2cf64430bf208faf78a { 'aliquot_tag': 'ALQ_c6511e60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07013.RNA-Seq.R1_L004.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R1_001.fastq.gz 3609610481 FASTQ R1_L004 unaligned CPTAC3 17aeb355-fa4f-4ff5-9fd5-8d0e21aff2d3 edcba2beb1192a30c44f5a3a5a3d81cb { 'aliquot_tag': 'ALQ_c6511e60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3L-07013.RNA-Seq.R2_L004.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R2_001.fastq.gz 4145611122 FASTQ R2_L004 unaligned CPTAC3 1023c6f2-892a-4949-82ec-e92440e8f394 88e6d5177d9b119bd152105d68d25722 { 'aliquot_tag': 'ALQ_c6511e60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3L-07013.RNA-Seq.transcriptome.Tbm.hg38 C3L-07013 AML RNA-Seq tumor_bone_marrow CPT0423650002 33252ff5-8c63-4e04-8b60-dbd637bde0c5.rna_seq.transcriptome.gdc_realn.bam 10802815241 BAM transcriptome harmonized CPTAC3 f3607b78-b2dd-467d-9b56-d496e3a12b92 71eac3593fd9e24cc0228b6128aa2a52 { 'aliquot_tag': 'ALQ_c6511e60', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07013.WGS.Nbc C3L-07013 AML WGS buccal_normal CPT0423740001 CPT0423740001.WholeGenome.RP-2158.bam 53990682216 BAM aligned CPTAC3 f1ccbcd9-f455-42f6-9717-724a3e1fd937 50c8d8976215615346f4259b1c6361ba { 'aliquot_tag': 'ALQ_a964b5cf', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-07013.WGS.Nbc.hg38 C3L-07013 AML WGS buccal_normal CPT0423740001 2cfc39c7-9454-401a-b69a-5300bbb3093a_wgs_gdc_realn.bam 172603541079 BAM harmonized CPTAC3 998c64c5-cac5-473d-a385-8c99522cf665 7dc465c3ffc3c9f50e73aad70e87b546 { 'aliquot_tag': 'ALQ_a964b5cf', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-07013.WGS.Tbm C3L-07013 AML WGS tumor_bone_marrow CPT0423640002 CPT0423640002.WholeGenome.RP-2158.bam 44356654820 BAM aligned CPTAC3 2efefab3-c73f-4b57-bfa5-4826a4846922 2230a484e4032667baca986fcb00465b { 'aliquot_tag': 'ALQ_fb3137d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07013.WGS.Tbm.hg38 C3L-07013 AML WGS tumor_bone_marrow CPT0423640002 516a8b14-1a11-46a8-abec-0d89c4766b89_wgs_gdc_realn.bam 403743062329 BAM harmonized CPTAC3 56965835-c74a-4372-9f42-4bb4fe46ae3a b11d9396fdbbcfa9baa9d1fff92909f8 { 'aliquot_tag': 'ALQ_fb3137d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-07013.WXS.Nbc C3L-07013 AML WXS buccal_normal CPT0423740001 CPT0423740001.WholeExome.RP-1303.bam 33334855248 BAM aligned CPTAC3 82083bb0-d7e4-44ff-bf43-aa968b0c36d2 ae49fcf82f84ca04074247bc07b00913 { 'aliquot_tag': 'ALQ_a964b5cf', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-07013.WXS.Nbc.hg38 C3L-07013 AML WXS buccal_normal CPT0423740001 2cfc39c7-9454-401a-b69a-5300bbb3093a_wxs_gdc_realn.bam 44977778426 BAM harmonized CPTAC3 6d83953f-9d59-45fd-9f1c-48d917f0efe9 b231d52d4e35190e27c55c85912f43b0 { 'aliquot_tag': 'ALQ_a964b5cf', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-07013.WXS.Tbm C3L-07013 AML WXS tumor_bone_marrow CPT0423640002 CPT0423640002.WholeExome.RP-1303.bam 25242973164 BAM aligned CPTAC3 796241ec-a38a-4028-b621-343be77994c4 b10f96d90358bc9a98403a9f5b692bb0 { 'aliquot_tag': 'ALQ_fb3137d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07013.WXS.Tbm.hg38 C3L-07013 AML WXS tumor_bone_marrow CPT0423640002 516a8b14-1a11-46a8-abec-0d89c4766b89_wxs_gdc_realn.bam 35353671823 BAM harmonized CPTAC3 77b57be8-82b9-4fbd-94cf-cdb1624b219c 8fdf03515b5336f304ca3f5ea4eaa54a { 'aliquot_tag': 'ALQ_fb3137d0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-07032.RNA-Seq.chimeric.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.chimeric.gdc_realn.bam 63081382 BAM chimeric harmonized CPTAC3 85dfb5f6-65c3-49d5-bb1c-ebfe0dd3809d 18939ebe653af2d687acbe8238c6597f { 'aliquot_tag': 'ALQ_828862eb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07032.RNA-Seq.genomic.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.genomic.gdc_realn.bam 9498612665 BAM genomic harmonized CPTAC3 54ba599d-cfd2-42e2-85cf-4d9ba8f11a3b 204a166fec8c019916e24e574a4cc2e4 { 'aliquot_tag': 'ALQ_828862eb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07032.RNA-Seq.R1_L002.A C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R1_001.fastq.gz 4359507199 FASTQ R1_L002 unaligned CPTAC3 88ba9750-4977-49cb-9058-c68e1b1b7570 d258562bc158932ff5f7cc321078289d { 'aliquot_tag': 'ALQ_828862eb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07032.RNA-Seq.R2_L002.A C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R2_001.fastq.gz 4600968470 FASTQ R2_L002 unaligned CPTAC3 f37f4fc1-e819-471b-8ad1-0bf07194d51f 4540caa5c0093d8f223c2241ff8d46ed { 'aliquot_tag': 'ALQ_828862eb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07032.RNA-Seq.genomic.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.genomic.gdc_realn.bam 9498612665 BAM genomic harmonized CPTAC3 f465ba1c-3234-48e7-91fd-fc11a79416d2 204a166fec8c019916e24e574a4cc2e4 { 'aliquot_tag': 'ALQ_828862eb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07032.RNA-Seq.R1_L002.A C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R1_001.fastq.gz 4359507199 FASTQ R1_L002 unaligned CPTAC3 88ba9750-4977-49cb-9058-c68e1b1b7570 d258562bc158932ff5f7cc321078289d { 'aliquot_tag': 'ALQ_828862eb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-07032.RNA-Seq.R2_L002.A C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R2_001.fastq.gz 4600968470 FASTQ R2_L002 unaligned CPTAC3 f37f4fc1-e819-471b-8ad1-0bf07194d51f 4540caa5c0093d8f223c2241ff8d46ed { 'aliquot_tag': 'ALQ_828862eb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } C3L-07032.RNA-Seq.transcriptome.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal CPT0347760005 2b7911ee-4714-4669-8c3a-7cf3a6c153dc.rna_seq.transcriptome.gdc_realn.bam 12676208890 BAM transcriptome harmonized CPTAC3 5adecd04-1737-49e0-bfec-001b3221dbbd d27822310ed1c5ba531fd0c1c7933b5f { 'aliquot_tag': 'ALQ_828862eb', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-07033.RNA-Seq.chimeric.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 164118aa-fd54-4a7c-a86b-40bb1958e634.rna_seq.chimeric.gdc_realn.bam 95552753 BAM chimeric harmonized CPTAC3 5dfc4912-c6c1-4f1c-b736-dc0aad9b6c77 aed82059a6cc51414d26831b52478177 { 'aliquot_tag': 'ALQ_d8f53a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07033.RNA-Seq.genomic.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 164118aa-fd54-4a7c-a86b-40bb1958e634.rna_seq.genomic.gdc_realn.bam 10283639041 BAM genomic harmonized CPTAC3 1c188ac9-0e0b-4ad5-9c8d-117cc9549b1e 04ea389f63a0a0ba1c88ca0f5c02adfc { 'aliquot_tag': 'ALQ_d8f53a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07033.RNA-Seq.R1_L002.A C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R1_001.fastq.gz 4531104702 FASTQ R1_L002 unaligned CPTAC3 37537c02-5de7-4494-ae9e-e4e717f391fb 6fac3f865d8c6f5c48359817292329fa { 'aliquot_tag': 'ALQ_d8f53a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07033.RNA-Seq.R2_L002.A C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R2_001.fastq.gz 5091753246 FASTQ R2_L002 unaligned CPTAC3 e074f8ea-87fc-499f-b028-738c12b62cbc 340a21e302db95bcc30b88ce28f9ea4e { 'aliquot_tag': 'ALQ_d8f53a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07033.RNA-Seq.genomic.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 164118aa-fd54-4a7c-a86b-40bb1958e634.rna_seq.genomic.gdc_realn.bam 10283639041 BAM genomic harmonized CPTAC3 611abacc-4edf-407e-994a-d80476eb9e3a 04ea389f63a0a0ba1c88ca0f5c02adfc { 'aliquot_tag': 'ALQ_d8f53a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07033.RNA-Seq.R1_L002.A C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R1_001.fastq.gz 4531104702 FASTQ R1_L002 unaligned CPTAC3 37537c02-5de7-4494-ae9e-e4e717f391fb 6fac3f865d8c6f5c48359817292329fa { 'aliquot_tag': 'ALQ_d8f53a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3L-07033.RNA-Seq.R2_L002.A C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R2_001.fastq.gz 5091753246 FASTQ R2_L002 unaligned CPTAC3 e074f8ea-87fc-499f-b028-738c12b62cbc 340a21e302db95bcc30b88ce28f9ea4e { 'aliquot_tag': 'ALQ_d8f53a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } C3L-07033.RNA-Seq.transcriptome.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal CPT0347790005 164118aa-fd54-4a7c-a86b-40bb1958e634.rna_seq.transcriptome.gdc_realn.bam 11228146088 BAM transcriptome harmonized CPTAC3 8c854815-b007-4da4-9157-0e96f03b1376 83a05ef7e8080220373a783529e508d4 { 'aliquot_tag': 'ALQ_d8f53a', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-07034.RNA-Seq.chimeric.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 a935b4c0-dfcf-45fc-9c4e-efb9022c8eee.rna_seq.chimeric.gdc_realn.bam 50215892 BAM chimeric harmonized CPTAC3 c2ec24f2-aa4c-42c3-a634-e99ecfc6216b 1acac3b1737ae0b27333877dc1c92444 { 'aliquot_tag': 'ALQ_865e76fe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07034.RNA-Seq.genomic.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 a935b4c0-dfcf-45fc-9c4e-efb9022c8eee.rna_seq.genomic.gdc_realn.bam 7964760572 BAM genomic harmonized CPTAC3 a114987a-c786-4695-bebd-bc80091dc09a e00eb05264bc097015b4454743afa272 { 'aliquot_tag': 'ALQ_865e76fe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07034.RNA-Seq.R1_L001.A C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 3190444841 FASTQ R1_L001 unaligned CPTAC3 156bec6c-7178-4b00-8d6b-cb5bae408463 8b459572f95ede52eb1525cb4d56ea45 { 'aliquot_tag': 'ALQ_865e76fe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07034.RNA-Seq.R2_L001.A C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 3715062124 FASTQ R2_L001 unaligned CPTAC3 d9794500-bac2-45f1-a463-d7e90fa594ab 522f76dcca840f1b285f8d49645ce33c { 'aliquot_tag': 'ALQ_865e76fe', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07034.RNA-Seq.genomic.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 a935b4c0-dfcf-45fc-9c4e-efb9022c8eee.rna_seq.genomic.gdc_realn.bam 7964760572 BAM genomic harmonized CPTAC3 225b0e81-88c7-4d84-8459-bd3b0dbc76be e00eb05264bc097015b4454743afa272 { 'aliquot_tag': 'ALQ_865e76fe', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07034.RNA-Seq.R1_L001.A C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 3190444841 FASTQ R1_L001 unaligned CPTAC3 156bec6c-7178-4b00-8d6b-cb5bae408463 8b459572f95ede52eb1525cb4d56ea45 { 'aliquot_tag': 'ALQ_865e76fe', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-07034.RNA-Seq.R2_L001.A C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 200731_UNC31-K00269_0286_AHHWJ2BBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 3715062124 FASTQ R2_L001 unaligned CPTAC3 d9794500-bac2-45f1-a463-d7e90fa594ab 522f76dcca840f1b285f8d49645ce33c { 'aliquot_tag': 'ALQ_865e76fe', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } C3L-07034.RNA-Seq.transcriptome.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal CPT0347820005 a935b4c0-dfcf-45fc-9c4e-efb9022c8eee.rna_seq.transcriptome.gdc_realn.bam 8924869865 BAM transcriptome harmonized CPTAC3 bbbe5f20-a341-4481-b1c1-94fc13e8cd20 b786fefbbef02f733fc5b56a41eddbb0 { 'aliquot_tag': 'ALQ_865e76fe', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-07035.RNA-Seq.chimeric.A.hg38 C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 1cc0c765-652d-4fb9-be28-2d46e04db917.rna_seq.chimeric.gdc_realn.bam 65295916 BAM chimeric harmonized CPTAC3 2a0a3519-6ce3-41b1-9e6f-df921c680831 56affd8d1b6b21d3bc600cbf861f2dff { 'aliquot_tag': 'ALQ_347eaaee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07035.RNA-Seq.genomic.A.hg38 C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 1cc0c765-652d-4fb9-be28-2d46e04db917.rna_seq.genomic.gdc_realn.bam 9866835080 BAM genomic harmonized CPTAC3 29a05842-93a4-43a6-96d1-cf681e5e1b4a d3a4af107c34ca26100b93812b2a7ef0 { 'aliquot_tag': 'ALQ_347eaaee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07035.RNA-Seq.R1_L001.A C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 200731_UNC31-K00269_0286_AHHWJ2BBXY_GAATGAGA-GAGGCATT_S3_L001_R1_001.fastq.gz 4262833306 FASTQ R1_L001 unaligned CPTAC3 3a11d2c4-3f6d-4d93-9f48-485afc4059bb 4d52ae28806cb5f03d9a3fff565bda74 { 'aliquot_tag': 'ALQ_347eaaee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07035.RNA-Seq.R2_L001.A C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 200731_UNC31-K00269_0286_AHHWJ2BBXY_GAATGAGA-GAGGCATT_S3_L001_R2_001.fastq.gz 4815441455 FASTQ R2_L001 unaligned CPTAC3 697dbb59-0c83-4289-be41-f3804a391a4d a88b3aa93113bbb9c4a4cd77fb519508 { 'aliquot_tag': 'ALQ_347eaaee', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07035.RNA-Seq.genomic.A.hg38 C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 1cc0c765-652d-4fb9-be28-2d46e04db917.rna_seq.genomic.gdc_realn.bam 9866835080 BAM genomic harmonized CPTAC3 ea3f309c-9a48-4e2a-9f23-45aafff8f38b d3a4af107c34ca26100b93812b2a7ef0 { 'aliquot_tag': 'ALQ_347eaaee', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07035.RNA-Seq.R1_L001.A C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 200731_UNC31-K00269_0286_AHHWJ2BBXY_GAATGAGA-GAGGCATT_S3_L001_R1_001.fastq.gz 4262833306 FASTQ R1_L001 unaligned CPTAC3 3a11d2c4-3f6d-4d93-9f48-485afc4059bb 4d52ae28806cb5f03d9a3fff565bda74 { 'aliquot_tag': 'ALQ_347eaaee', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-07035.RNA-Seq.R2_L001.A C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 200731_UNC31-K00269_0286_AHHWJ2BBXY_GAATGAGA-GAGGCATT_S3_L001_R2_001.fastq.gz 4815441455 FASTQ R2_L001 unaligned CPTAC3 697dbb59-0c83-4289-be41-f3804a391a4d a88b3aa93113bbb9c4a4cd77fb519508 { 'aliquot_tag': 'ALQ_347eaaee', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } C3L-07035.RNA-Seq.transcriptome.A.hg38 C3L-07035 PDA RNA-Seq tissue_normal CPT0347850005 1cc0c765-652d-4fb9-be28-2d46e04db917.rna_seq.transcriptome.gdc_realn.bam 11670361047 BAM transcriptome harmonized CPTAC3 d977e1d8-59e6-44f9-87c8-9ea9e6bc1c98 30356a19b9cb3290619d31d637029a18 { 'aliquot_tag': 'ALQ_347eaaee', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-07036.RNA-Seq.chimeric.A.hg38 C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 ff02e459-d5eb-4a8e-980b-79cd4d96b29d.rna_seq.chimeric.gdc_realn.bam 38980865 BAM chimeric harmonized CPTAC3 cac7da9b-e721-4dc1-8a2c-95017ff3f6c3 d7640fff1a55d6d3d7d95c94e1e94401 { 'aliquot_tag': 'ALQ_ccee6e5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07036.RNA-Seq.genomic.A.hg38 C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 ff02e459-d5eb-4a8e-980b-79cd4d96b29d.rna_seq.genomic.gdc_realn.bam 7428085529 BAM genomic harmonized CPTAC3 4bca5747-c3bb-4789-9db7-8ffdaa6515e7 11d29d29987b2f94f4bf8358b8bb6116 { 'aliquot_tag': 'ALQ_ccee6e5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07036.RNA-Seq.R1_L001.A C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R1_001.fastq.gz 2990375045 FASTQ R1_L001 unaligned CPTAC3 f9245412-081c-4289-99fb-475fac2473ee 77bc0dc4f13e87f98f147db6e8484538 { 'aliquot_tag': 'ALQ_ccee6e5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07036.RNA-Seq.R2_L001.A C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R2_001.fastq.gz 3441842587 FASTQ R2_L001 unaligned CPTAC3 55668996-4f4e-4508-9152-634da507607d 8fe56d9716992ee2594dcac204c8dcb0 { 'aliquot_tag': 'ALQ_ccee6e5f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07036.RNA-Seq.genomic.A.hg38 C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 ff02e459-d5eb-4a8e-980b-79cd4d96b29d.rna_seq.genomic.gdc_realn.bam 7428085529 BAM genomic harmonized CPTAC3 9629a2dd-2a21-4740-a5d5-e231a287a83b 11d29d29987b2f94f4bf8358b8bb6116 { 'aliquot_tag': 'ALQ_ccee6e5f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07036.RNA-Seq.R1_L001.A C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R1_001.fastq.gz 2990375045 FASTQ R1_L001 unaligned CPTAC3 f9245412-081c-4289-99fb-475fac2473ee 77bc0dc4f13e87f98f147db6e8484538 { 'aliquot_tag': 'ALQ_ccee6e5f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-07036.RNA-Seq.R2_L001.A C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R2_001.fastq.gz 3441842587 FASTQ R2_L001 unaligned CPTAC3 55668996-4f4e-4508-9152-634da507607d 8fe56d9716992ee2594dcac204c8dcb0 { 'aliquot_tag': 'ALQ_ccee6e5f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } C3L-07036.RNA-Seq.transcriptome.A.hg38 C3L-07036 PDA RNA-Seq tissue_normal CPT0347880005 ff02e459-d5eb-4a8e-980b-79cd4d96b29d.rna_seq.transcriptome.gdc_realn.bam 8898514803 BAM transcriptome harmonized CPTAC3 c8706639-7226-402e-918e-949c0d9e2da5 f3ee1db1d8327e8c61add50f73eaf3ee { 'aliquot_tag': 'ALQ_ccee6e5f', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-07037.RNA-Seq.chimeric.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.chimeric.gdc_realn.bam 148479090 BAM chimeric harmonized CPTAC3 09881fd9-6ea8-4750-9c99-67c1d52bdd55 c4eafc1f8ff6634c643af78ffa6dbbfc { 'aliquot_tag': 'ALQ_aa2df8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07037.RNA-Seq.genomic.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.genomic.gdc_realn.bam 9670052249 BAM genomic harmonized CPTAC3 57a4342f-0c9c-42d1-8064-0d8aa3779713 d51e191d781e439fbee8d95d6b2f1f92 { 'aliquot_tag': 'ALQ_aa2df8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07037.RNA-Seq.R1_L001.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R1_001.fastq.gz 4194791505 FASTQ R1_L001 unaligned CPTAC3 3399328b-16f5-4c7a-8e1f-338368645ed8 3619b3194ff2aa47564da23b1342f5af { 'aliquot_tag': 'ALQ_aa2df8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3L-07037.RNA-Seq.R2_L001.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R2_001.fastq.gz 4651885575 FASTQ R2_L001 unaligned CPTAC3 db70a6b8-672d-4a13-bd16-bd52d87843fe 5260fcae215a5f3e074db2f6ad879f33 { 'aliquot_tag': 'ALQ_aa2df8b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07037.RNA-Seq.genomic.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.genomic.gdc_realn.bam 9670052249 BAM genomic harmonized CPTAC3 172bbb8c-f105-46ff-80fe-15f78b102bd6 d51e191d781e439fbee8d95d6b2f1f92 { 'aliquot_tag': 'ALQ_aa2df8b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3L-07037.RNA-Seq.R1_L001.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R1_001.fastq.gz 4194791505 FASTQ R1_L001 unaligned CPTAC3 3399328b-16f5-4c7a-8e1f-338368645ed8 3619b3194ff2aa47564da23b1342f5af { 'aliquot_tag': 'ALQ_aa2df8b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3L-07037.RNA-Seq.R2_L001.A C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R2_001.fastq.gz 4651885575 FASTQ R2_L001 unaligned CPTAC3 db70a6b8-672d-4a13-bd16-bd52d87843fe 5260fcae215a5f3e074db2f6ad879f33 { 'aliquot_tag': 'ALQ_aa2df8b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } C3L-07037.RNA-Seq.transcriptome.A.hg38 C3L-07037 PDA RNA-Seq tissue_normal CPT0347910005 c49f1842-78f8-476c-9c3e-800521e71eb6.rna_seq.transcriptome.gdc_realn.bam 10569505762 BAM transcriptome harmonized CPTAC3 291861f3-2e47-4cac-a807-589bdf58c20c ff694eda7618b8f8c68456fdb8bf244c { 'aliquot_tag': 'ALQ_aa2df8b', 'gdc_sample_type': 'Solid Tissue Normal' } C3L-07202.MethArray.Green.T C3L-07202 GBM Methylation Array tumor CPT0407650010 205555390174_R06C01_Grn.idat 13677965 IDAT Green NA CPTAC3 222960f7-20b1-4046-b15e-2511a9aaf42f 851fa7f6e1508cf64bb570adc2048557 { 'aliquot_tag': 'ALQ_872e6d63', 'gdc_sample_type': 'Primary Tumor' } C3L-07202.MethArray.Red.T C3L-07202 GBM Methylation Array tumor CPT0407650010 205555390174_R06C01_Red.idat 13677965 IDAT Red NA CPTAC3 ceb8a577-4b0b-47d0-a640-a597c25da03b acc01d2fb102ab19fc4536a3acba6e8d { 'aliquot_tag': 'ALQ_872e6d63', 'gdc_sample_type': 'Primary Tumor' } C3L-07202.miRNA-Seq.T C3L-07202 GBM miRNA-Seq tumor CPT0407650007 210702_UNC32-K00270_0289_AHKJ22BBXY_ATCACG_S5_L005_R1_001.unaln.bam 142731958 BAM unaligned CPTAC3 bafbc425-2aa6-4d3b-9147-84e2537a3d4a e338bb6ee677f9faa5edc4db5b6920cc { 'aliquot_tag': 'ALQ_51c981', 'gdc_sample_type': 'Primary Tumor' } -C3L-07202.RNA-Seq.R1_L008.T C3L-07202 GBM RNA-Seq tumor CPT0407650007 210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R1_001.fastq.gz 4673354416 FASTQ R1_L008 unaligned CPTAC3 0d2a4b38-4741-48ac-bd06-58e5a7397594 e82c52d02676bcbb56a568fffa3f772f { 'aliquot_tag': 'ALQ_51c981', 'gdc_sample_type': 'Primary Tumor' } -C3L-07202.RNA-Seq.R2_L008.T C3L-07202 GBM RNA-Seq tumor CPT0407650007 210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R2_001.fastq.gz 5307823033 FASTQ R2_L008 unaligned CPTAC3 9e0f8f05-b887-4c26-b196-f8d137d04b38 5d1fa7779b06858b0283cd8da4719654 { 'aliquot_tag': 'ALQ_51c981', 'gdc_sample_type': 'Primary Tumor' } +C3L-07202.miRNA-Seq.T.hg38 C3L-07202 GBM miRNA-Seq tumor CPT0407650007 d7c4d648-fff8-43dd-97ff-71537ed2d14c_mirnaseq_gdc_realn.bam 154494381 BAM harmonized CPTAC3 cfc5cc4f-de57-4f94-aad3-ac48f5b91cbb ce4f52cc408d4bf381ecf0fd005161c5 { 'aliquot_tag': 'ALQ_51c981', 'gdc_sample_type': 'Primary Tumor' } +C3L-07202.RNA-Seq.chimeric.T.hg38 C3L-07202 GBM RNA-Seq tumor CPT0407650007 47bca602-b2bb-4163-8b9e-a09614a86ec1.rna_seq.chimeric.gdc_realn.bam 114492033 BAM chimeric harmonized CPTAC3 6ddab828-389a-4df0-9976-fadf88d02c50 07663b3957a711be254fb646f72f2cfa { 'aliquot_tag': 'ALQ_51c981', 'gdc_sample_type': 'Primary Tumor' } +C3L-07202.RNA-Seq.genomic.T.hg38 C3L-07202 GBM RNA-Seq tumor CPT0407650007 47bca602-b2bb-4163-8b9e-a09614a86ec1.rna_seq.genomic.gdc_realn.bam 10126285337 BAM genomic harmonized CPTAC3 f419ef07-3477-4e9c-8703-cdf75eabe2d3 6aa3288b96ce7998bc609795b81700a2 { 'aliquot_tag': 'ALQ_51c981', 'gdc_sample_type': 'Primary Tumor' } +C3L-07202.RNA-Seq.R1_L008.T C3L-07202 GBM RNA-Seq tumor CPT0407650007 210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R1_001.fastq.gz 4673354416 FASTQ R1_L008 unaligned CPTAC3 0d2a4b38-4741-48ac-bd06-58e5a7397594 e82c52d02676bcbb56a568fffa3f772f { 'aliquot_tag': 'ALQ_51c981', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-07202.RNA-Seq.R2_L008.T C3L-07202 GBM RNA-Seq tumor CPT0407650007 210615_UNC31-K00269_0299_BHLFTYBBXY_CAATTAAC-CGAGATAT_S76_L008_R2_001.fastq.gz 5307823033 FASTQ R2_L008 unaligned CPTAC3 9e0f8f05-b887-4c26-b196-f8d137d04b38 5d1fa7779b06858b0283cd8da4719654 { 'aliquot_tag': 'ALQ_51c981', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-07202.RNA-Seq.transcriptome.T.hg38 C3L-07202 GBM RNA-Seq tumor CPT0407650007 47bca602-b2bb-4163-8b9e-a09614a86ec1.rna_seq.transcriptome.gdc_realn.bam 7634470702 BAM transcriptome harmonized CPTAC3 54a12723-d77b-45ee-8cfa-09701fa5727e 2bc72732ae62f3b41bd3fdb70bb46560 { 'aliquot_tag': 'ALQ_51c981', 'gdc_sample_type': 'Primary Tumor' } C3L-07202.WGS.N C3L-07202 GBM WGS blood_normal CPT0408730002 CPT0408730002.WholeGenome.RP-2158.bam 23879461295 BAM aligned CPTAC3 be5343f5-50ec-4556-826f-2f78a7c3fb88 9100f533d568e96f096d78f6f7f18fb9 { 'aliquot_tag': 'ALQ_c26f6be2', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-07202.WGS.N.hg38 C3L-07202 GBM WGS blood_normal CPT0408730002 9dc15f55-5d18-43e8-ae78-4f7ed0f957f5_wgs_gdc_realn.bam 68922636729 BAM harmonized CPTAC3 e8e293fc-c8ca-4cc8-809a-18ff04d36c91 df2f21b209e3f56ddf00dd90f02425ea { 'aliquot_tag': 'ALQ_c26f6be2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-07202.WGS.T C3L-07202 GBM WGS tumor CPT0407650010 CPT0407650010.WholeGenome.RP-2158.bam 22112867784 BAM aligned CPTAC3 bd7ee9e2-1221-4100-b46b-746fee3ffcc5 9c6fdcb1d1682c8b368d37b615056b62 { 'aliquot_tag': 'ALQ_872e6d63', 'gdc_sample_type': 'Primary Tumor' } +C3L-07202.WGS.T.hg38 C3L-07202 GBM WGS tumor CPT0407650010 ce1dba67-d732-46e3-9e72-096f6f0b75b9_wgs_gdc_realn.bam 62842632255 BAM harmonized CPTAC3 27664a4a-b413-4602-a67e-2f168c52e22a c91eaaaf08dca52d74650c405135bfd1 { 'aliquot_tag': 'ALQ_872e6d63', 'gdc_sample_type': 'Primary Tumor' } C3L-07202.WXS.N C3L-07202 GBM WXS blood_normal CPT0408730002 CPT0408730002.WholeExome.RP-1303.bam 26749694695 BAM aligned CPTAC3 9cfa2645-0420-4d57-a7e6-0fba83c81c42 1d1d3b858788097bf01e13127d930116 { 'aliquot_tag': 'ALQ_c26f6be2', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-07202.WXS.N.hg38 C3L-07202 GBM WXS blood_normal CPT0408730002 9dc15f55-5d18-43e8-ae78-4f7ed0f957f5_wxs_gdc_realn.bam 36976133990 BAM harmonized CPTAC3 5d21eff9-b0d4-40dd-ad5d-fd6387a07eed f43c63d1055e4876cbf61e4b74f5109c { 'aliquot_tag': 'ALQ_c26f6be2', 'gdc_sample_type': 'Blood Derived Normal' } C3L-07202.WXS.T C3L-07202 GBM WXS tumor CPT0407650010 CPT0407650010.WholeExome.RP-1303.bam 25141500331 BAM aligned CPTAC3 08c3554c-d4d2-4e22-a091-2a8a22a88d90 eca21478e7eed4dcfe81c924247d563f { 'aliquot_tag': 'ALQ_872e6d63', 'gdc_sample_type': 'Primary Tumor' } +C3L-07202.WXS.T.hg38 C3L-07202 GBM WXS tumor CPT0407650010 ce1dba67-d732-46e3-9e72-096f6f0b75b9_wxs_gdc_realn.bam 35323200367 BAM harmonized CPTAC3 5c4c8930-d564-4e1a-97bd-5971d536af18 d33bd559600876512b74d4a51a654079 { 'aliquot_tag': 'ALQ_872e6d63', 'gdc_sample_type': 'Primary Tumor' } +C3L-07212.miRNA-Seq.T C3L-07212 LGG miRNA-Seq tumor CPT0447560007 220505_UNC32-K00270_0319_AHMV2KBBXY_CTAGCT_S6_L003_R1_001.unaln.bam 310872045 BAM unaligned CPTAC3 e44650c7-2e73-4786-bb16-e7a3d837fe16 06345681442ce851c00904871d0a65ba { 'aliquot_tag': 'ALQ_452fcf05', 'gdc_sample_type': 'Primary Tumor' } C3L-07213.MethArray.Green.T C3L-07213 GBM Methylation Array tumor CPT0407970010 205555390176_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ed6a2433-0756-4efa-8a10-cec2fcb27e88 6a00a334c1c3fb59edcc99068255357a { 'aliquot_tag': 'ALQ_cb88cd6', 'gdc_sample_type': 'Primary Tumor' } C3L-07213.MethArray.Red.T C3L-07213 GBM Methylation Array tumor CPT0407970010 205555390176_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 4a399bb5-ed14-4a50-818d-c651f6d48540 944f68e32368dd49aabda726d93d9349 { 'aliquot_tag': 'ALQ_cb88cd6', 'gdc_sample_type': 'Primary Tumor' } C3L-07213.miRNA-Seq.T C3L-07213 GBM miRNA-Seq tumor CPT0407970007 210702_UNC32-K00270_0289_AHKJ22BBXY_ACAGTG_S1_L005_R1_001.unaln.bam 169566636 BAM unaligned CPTAC3 c43fded4-9ae9-4cbf-a391-af4b6106e8ba c6f3be2e9f3230493bb570c6860624da { 'aliquot_tag': 'ALQ_8bc72834', 'gdc_sample_type': 'Primary Tumor' } -C3L-07213.RNA-Seq.R1_L008.T C3L-07213 GBM RNA-Seq tumor CPT0407970007 210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R1_001.fastq.gz 3214110588 FASTQ R1_L008 unaligned CPTAC3 a3414943-3507-49d3-8c9f-c50c7721b209 52e32e039bd1e7d38bdf56b0caa6aba6 { 'aliquot_tag': 'ALQ_8bc72834', 'gdc_sample_type': 'Primary Tumor' } -C3L-07213.RNA-Seq.R2_L008.T C3L-07213 GBM RNA-Seq tumor CPT0407970007 210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R2_001.fastq.gz 3605214139 FASTQ R2_L008 unaligned CPTAC3 ea6ad82f-b787-4ee4-820c-f4b30dd9d61c 2ed49fc0b52d4696bd12b25b301bf532 { 'aliquot_tag': 'ALQ_8bc72834', 'gdc_sample_type': 'Primary Tumor' } +C3L-07213.miRNA-Seq.T.hg38 C3L-07213 GBM miRNA-Seq tumor CPT0407970007 cda0b09b-05f5-49aa-8e3b-80f5c3aee1b3_mirnaseq_gdc_realn.bam 187401409 BAM harmonized CPTAC3 a1639b74-3562-478a-8463-6555ba8d5e03 aaf15c7b45f9df5b5104116dff8aa78e { 'aliquot_tag': 'ALQ_8bc72834', 'gdc_sample_type': 'Primary Tumor' } +C3L-07213.RNA-Seq.chimeric.T.hg38 C3L-07213 GBM RNA-Seq tumor CPT0407970007 327f345c-d942-4845-b42e-98a3f79d03be.rna_seq.chimeric.gdc_realn.bam 240962729 BAM chimeric harmonized CPTAC3 220c39b5-995b-4c50-8931-c7ba2c067575 d5eb8c042b13e4de5459598f2d4adf0e { 'aliquot_tag': 'ALQ_8bc72834', 'gdc_sample_type': 'Primary Tumor' } +C3L-07213.RNA-Seq.genomic.T.hg38 C3L-07213 GBM RNA-Seq tumor CPT0407970007 327f345c-d942-4845-b42e-98a3f79d03be.rna_seq.genomic.gdc_realn.bam 7216907422 BAM genomic harmonized CPTAC3 002571e9-bcdb-4e21-8cd1-674eacf7a304 5c1446684f29279eb927ac3d2842fbad { 'aliquot_tag': 'ALQ_8bc72834', 'gdc_sample_type': 'Primary Tumor' } +C3L-07213.RNA-Seq.R1_L008.T C3L-07213 GBM RNA-Seq tumor CPT0407970007 210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R1_001.fastq.gz 3214110588 FASTQ R1_L008 unaligned CPTAC3 a3414943-3507-49d3-8c9f-c50c7721b209 52e32e039bd1e7d38bdf56b0caa6aba6 { 'aliquot_tag': 'ALQ_8bc72834', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3L-07213.RNA-Seq.R2_L008.T C3L-07213 GBM RNA-Seq tumor CPT0407970007 210615_UNC31-K00269_0299_BHLFTYBBXY_TGGCCGGT-TAGAGCGC_S78_L008_R2_001.fastq.gz 3605214139 FASTQ R2_L008 unaligned CPTAC3 ea6ad82f-b787-4ee4-820c-f4b30dd9d61c 2ed49fc0b52d4696bd12b25b301bf532 { 'aliquot_tag': 'ALQ_8bc72834', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3L-07213.RNA-Seq.transcriptome.T.hg38 C3L-07213 GBM RNA-Seq tumor CPT0407970007 327f345c-d942-4845-b42e-98a3f79d03be.rna_seq.transcriptome.gdc_realn.bam 9480278292 BAM transcriptome harmonized CPTAC3 dff98336-a851-4761-96ee-eda889fc11db 85a1b5685c3fc9cd159931ff928d42b8 { 'aliquot_tag': 'ALQ_8bc72834', 'gdc_sample_type': 'Primary Tumor' } C3L-07213.WGS.N C3L-07213 GBM WGS blood_normal CPT0408780002 CPT0408780002.WholeGenome.RP-2158.bam 30606188785 BAM aligned CPTAC3 e552b00d-62c3-4105-9e2a-4a8eff730bbb 2f54659e838ba4f02267c2f33d4061fb { 'aliquot_tag': 'ALQ_b5bf5af3', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-07213.WGS.N.hg38 C3L-07213 GBM WGS blood_normal CPT0408780002 64426bc4-0109-4c2e-89dc-b6b4509ba4d2_wgs_gdc_realn.bam 89161123615 BAM harmonized CPTAC3 81f5956f-4df7-41d9-be6e-af59c628b6dd 40358538f8ff0ce10f2133cc96ebb15f { 'aliquot_tag': 'ALQ_b5bf5af3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-07213.WGS.T C3L-07213 GBM WGS tumor CPT0407970010 CPT0407970010.WholeGenome.RP-2158.bam 21192425543 BAM aligned CPTAC3 512018cc-6dda-4966-acea-7e5655cbde7a 41d024de9790e2c2ec537be59394c81f { 'aliquot_tag': 'ALQ_cb88cd6', 'gdc_sample_type': 'Primary Tumor' } +C3L-07213.WGS.T.hg38 C3L-07213 GBM WGS tumor CPT0407970010 63cdc123-6efd-4d15-a5cb-4c8205b9eefe_wgs_gdc_realn.bam 61671193861 BAM harmonized CPTAC3 50f5310c-72b0-4d41-a8ce-6f4b370c351e 82e7b9ec1fed2cd76dd218d8e05de5db { 'aliquot_tag': 'ALQ_cb88cd6', 'gdc_sample_type': 'Primary Tumor' } C3L-07213.WXS.N C3L-07213 GBM WXS blood_normal CPT0408780002 CPT0408780002.WholeExome.RP-1303.bam 24378992351 BAM aligned CPTAC3 2e4ad5e7-fe94-4252-a927-7e60bfbddf0d d911326b5b171c6419aadbeb648e5e08 { 'aliquot_tag': 'ALQ_b5bf5af3', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-07213.WXS.N.hg38 C3L-07213 GBM WXS blood_normal CPT0408780002 64426bc4-0109-4c2e-89dc-b6b4509ba4d2_wxs_gdc_realn.bam 33733613698 BAM harmonized CPTAC3 51e744f3-1253-44bf-9b98-c26271785d96 89a1d2abef0098d5327c5c1867a7a021 { 'aliquot_tag': 'ALQ_b5bf5af3', 'gdc_sample_type': 'Blood Derived Normal' } C3L-07213.WXS.T C3L-07213 GBM WXS tumor CPT0407970010 CPT0407970010.WholeExome.RP-1303.bam 20738364712 BAM aligned CPTAC3 6b215bb0-a079-4c59-b74a-c3263ccfe118 d439fc8ec39f00ed358af66486156027 { 'aliquot_tag': 'ALQ_cb88cd6', 'gdc_sample_type': 'Primary Tumor' } +C3L-07213.WXS.T.hg38 C3L-07213 GBM WXS tumor CPT0407970010 63cdc123-6efd-4d15-a5cb-4c8205b9eefe_wxs_gdc_realn.bam 29144496069 BAM harmonized CPTAC3 57461fc1-881f-4b14-9c8c-6c795a225e1f 266f6416e51d889a2a09c0e4d9fcec86 { 'aliquot_tag': 'ALQ_cb88cd6', 'gdc_sample_type': 'Primary Tumor' } +C3L-07437.MethArray.Green.Tpb C3L-07437 AML Methylation Array tumor_peripheral_blood CPT0409210002 205707890143_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 a926175e-eaba-4889-8836-e503b5e7a535 98140d8c4b398f06dbcf387eeccc78b5 { 'aliquot_tag': 'ALQ_4e15a285', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07437.MethArray.Red.Tpb C3L-07437 AML Methylation Array tumor_peripheral_blood CPT0409210002 205707890143_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 4f06c41e-e122-4312-adb4-8a76617dc698 cfcbe061f9d3745d271290f999accdfe { 'aliquot_tag': 'ALQ_4e15a285', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-07437.miRNA-Seq.Tpb C3L-07437 AML miRNA-Seq tumor_peripheral_blood CPT0409220002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATTTT_S7_L003_R1_001.unaln.bam 281880782 BAM unaligned CPTAC3 8f930cdf-c82c-4e0a-ab86-e8bb1ee6f85b d1559341ca7d433c80a8e36a51d133bd { 'aliquot_tag': 'ALQ_9b5d855', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-07437.RNA-Seq.R1_L008.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 3625194988 FASTQ R1_L008 unaligned CPTAC3 19f81621-5e25-4547-9d95-f56513c37ea3 51d969a9c428c5660e899c95c0f4d897 { 'aliquot_tag': 'ALQ_9b5d855', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-07437.RNA-Seq.R2_L008.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R2_001.fastq.gz 4118264722 FASTQ R2_L008 unaligned CPTAC3 37df23e8-805f-4e27-85cd-dc39f8570266 ba3caa02727d2b1e462a915fa4f3373f { 'aliquot_tag': 'ALQ_9b5d855', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07437.miRNA-Seq.Tpb.hg38 C3L-07437 AML miRNA-Seq tumor_peripheral_blood CPT0409220002 984401a7-3608-414c-83e0-ae1619671d9b_mirnaseq_gdc_realn.bam 311512296 BAM harmonized CPTAC3 f03e52d6-48b6-4ee5-9980-1759dd42fadc f8a48ec133bfe79c63cbe9a22b393653 { 'aliquot_tag': 'ALQ_9b5d855', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07437.RNA-Seq.chimeric.Tpb.hg38 C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 26cdc6db-f88a-43c7-a153-54e8df8412e8.rna_seq.chimeric.gdc_realn.bam 600809012 BAM chimeric harmonized CPTAC3 45f0b16b-2fb9-473b-bc50-51cc1518eaf5 9a3ea8b28025503a09e5a4146a40e400 { 'aliquot_tag': 'ALQ_9b5d855', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07437.RNA-Seq.genomic.Tpb.hg38 C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 26cdc6db-f88a-43c7-a153-54e8df8412e8.rna_seq.genomic.gdc_realn.bam 7644508104 BAM genomic harmonized CPTAC3 31d49634-483a-4442-96ff-f9c8d1b6d782 c6a25ca6e98ddcf4c5e7307b4663ae30 { 'aliquot_tag': 'ALQ_9b5d855', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07437.RNA-Seq.R1_L008.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 3625194988 FASTQ R1_L008 unaligned CPTAC3 19f81621-5e25-4547-9d95-f56513c37ea3 51d969a9c428c5660e899c95c0f4d897 { 'aliquot_tag': 'ALQ_9b5d855', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L008' } +C3L-07437.RNA-Seq.R2_L008.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R2_001.fastq.gz 4118264722 FASTQ R2_L008 unaligned CPTAC3 37df23e8-805f-4e27-85cd-dc39f8570266 ba3caa02727d2b1e462a915fa4f3373f { 'aliquot_tag': 'ALQ_9b5d855', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L008' } +C3L-07437.RNA-Seq.transcriptome.Tpb.hg38 C3L-07437 AML RNA-Seq tumor_peripheral_blood CPT0409220002 26cdc6db-f88a-43c7-a153-54e8df8412e8.rna_seq.transcriptome.gdc_realn.bam 8559938700 BAM transcriptome harmonized CPTAC3 97a8a541-c560-4d7f-a5ca-c6b667e19e37 95cc45e1e88f1729c68f4cd20a62f221 { 'aliquot_tag': 'ALQ_9b5d855', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-07437.WGS.Nbc C3L-07437 AML WGS buccal_normal CPT0409180001 CPT0409180001.WholeGenome.RP-2158.bam 44608274877 BAM aligned CPTAC3 7a9c3765-7f33-47f9-a9e1-818c230385c0 8ab7f49e31d4ce076a041409c9586b1f { 'aliquot_tag': 'ALQ_5c98e3e0', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-07437.WGS.Nbc.hg38 C3L-07437 AML WGS buccal_normal CPT0409180001 98dffd8c-fa8d-4a22-8aa7-340942a012dd_wgs_gdc_realn.bam 133771417041 BAM harmonized CPTAC3 7f2b71bd-804b-4dbb-9d74-3539784d34e4 00cf53e76531fa5ddc0d2a7a70843c51 { 'aliquot_tag': 'ALQ_5c98e3e0', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-07437.WGS.Tpb C3L-07437 AML WGS tumor_peripheral_blood CPT0409210002 CPT0409210002.WholeGenome.RP-2158.bam 62735180275 BAM aligned CPTAC3 8230713e-1203-45ad-bc5e-288baeef2eb7 c25964a23dc48cdb346425663c7bdab6 { 'aliquot_tag': 'ALQ_4e15a285', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07437.WGS.Tpb.hg38 C3L-07437 AML WGS tumor_peripheral_blood CPT0409210002 37b109a5-ce63-4e05-a6dc-ca81ea23f35d_wgs_gdc_realn.bam 184732398408 BAM harmonized CPTAC3 b8a63078-67cb-4929-afe2-4ab723ea9327 0c6be709aa13b3f1bccf1ab1c7cd4bfa { 'aliquot_tag': 'ALQ_4e15a285', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-07437.WXS.Nbc C3L-07437 AML WXS buccal_normal CPT0409180001 CPT0409180001.WholeExome.RP-1303.bam 29530926162 BAM aligned CPTAC3 9004ddec-1d9b-4675-89e8-42c856e6bdea edf4fceefe20165b24f6b6ea284d92cf { 'aliquot_tag': 'ALQ_5c98e3e0', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-07437.WXS.Nbc.hg38 C3L-07437 AML WXS buccal_normal CPT0409180001 98dffd8c-fa8d-4a22-8aa7-340942a012dd_wxs_gdc_realn.bam 39957535150 BAM harmonized CPTAC3 2d79233e-307d-4835-b070-47feba860d01 e724ce4313c17ac322eab79b779a608d { 'aliquot_tag': 'ALQ_5c98e3e0', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-07437.WXS.Tpb C3L-07437 AML WXS tumor_peripheral_blood CPT0409210002 CPT0409210002.WholeExome.RP-1303.bam 26091082341 BAM aligned CPTAC3 b620a304-20ec-44c8-adf0-6770dae68220 1913d52199f8e6e125716d0ecb3b2a45 { 'aliquot_tag': 'ALQ_4e15a285', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07437.WXS.Tpb.hg38 C3L-07437 AML WXS tumor_peripheral_blood CPT0409210002 37b109a5-ce63-4e05-a6dc-ca81ea23f35d_wxs_gdc_realn.bam 36014507825 BAM harmonized CPTAC3 c030fb7f-77a4-4c1f-8a7e-06a6f91bef61 0aeed95744a8951c7e479c2e73f779f8 { 'aliquot_tag': 'ALQ_4e15a285', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07439.MethArray.Green.Tpb C3L-07439 AML Methylation Array tumor_peripheral_blood CPT0409360002 205987780153_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 65eebb3e-2e03-41b2-824a-4d1a730a879e cc0da6c18aae8761eceb026dc0c0c63a { 'aliquot_tag': 'ALQ_3769ad30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07439.MethArray.Red.Tpb C3L-07439 AML Methylation Array tumor_peripheral_blood CPT0409360002 205987780153_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 24467b3c-6531-47aa-bcbf-9161bf286e16 77c0e440730e5be3d02b29c9ac9fd342 { 'aliquot_tag': 'ALQ_3769ad30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-07439.miRNA-Seq.Tpb C3L-07439 AML miRNA-Seq tumor_peripheral_blood CPT0409370002 220125_UNC32-K00270_0311_AHMNYYBBXY_CATGGC_S6_L003_R1_001.unaln.bam 188685033 BAM unaligned CPTAC3 0d92688a-ace0-45e7-927e-256c262d8216 ef67e9ab1fbe0f329b17e02f9bbb2fad { 'aliquot_tag': 'ALQ_a098480', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-07439.RNA-Seq.R1_L007.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R1_001.fastq.gz 3579652035 FASTQ R1_L007 unaligned CPTAC3 8506fcf0-4ced-4a2a-90ed-878fa8d0f751 e227210cee8b5ee711424c484e438d59 { 'aliquot_tag': 'ALQ_a098480', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3L-07439.RNA-Seq.R2_L007.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R2_001.fastq.gz 3786729975 FASTQ R2_L007 unaligned CPTAC3 691147a6-204e-4cfc-acf0-16b432c7ed3d debd56e893ccbdd446174d46084c590a { 'aliquot_tag': 'ALQ_a098480', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07439.miRNA-Seq.Tpb.hg38 C3L-07439 AML miRNA-Seq tumor_peripheral_blood CPT0409370002 61124569-679a-4853-b053-5ea1d2aa3fa7_mirnaseq_gdc_realn.bam 210846683 BAM harmonized CPTAC3 5c742f42-1883-4f6b-8a87-957cdae95ac3 1dcb39c80237ae840a5f28f0abdf5c29 { 'aliquot_tag': 'ALQ_a098480', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07439.RNA-Seq.chimeric.Tpb.hg38 C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 212ccaae-dcc8-47f3-871f-0be3187f05d0.rna_seq.chimeric.gdc_realn.bam 434731531 BAM chimeric harmonized CPTAC3 0454cd0a-6cb5-4452-9cfe-4df9d3b93c23 4cd2bea4903622a62ff10ce0d2fdd826 { 'aliquot_tag': 'ALQ_a098480', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07439.RNA-Seq.genomic.Tpb.hg38 C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 212ccaae-dcc8-47f3-871f-0be3187f05d0.rna_seq.genomic.gdc_realn.bam 7018682144 BAM genomic harmonized CPTAC3 1031f657-e8f4-4efd-84ac-cc2b00760f72 4637c11bae0a826ea6a4529136ddd821 { 'aliquot_tag': 'ALQ_a098480', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07439.RNA-Seq.R1_L007.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R1_001.fastq.gz 3579652035 FASTQ R1_L007 unaligned CPTAC3 8506fcf0-4ced-4a2a-90ed-878fa8d0f751 e227210cee8b5ee711424c484e438d59 { 'aliquot_tag': 'ALQ_a098480', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L007' } +C3L-07439.RNA-Seq.R2_L007.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R2_001.fastq.gz 3786729975 FASTQ R2_L007 unaligned CPTAC3 691147a6-204e-4cfc-acf0-16b432c7ed3d debd56e893ccbdd446174d46084c590a { 'aliquot_tag': 'ALQ_a098480', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L007' } +C3L-07439.RNA-Seq.transcriptome.Tpb.hg38 C3L-07439 AML RNA-Seq tumor_peripheral_blood CPT0409370002 212ccaae-dcc8-47f3-871f-0be3187f05d0.rna_seq.transcriptome.gdc_realn.bam 9872199459 BAM transcriptome harmonized CPTAC3 ee730d3f-1803-41fd-b4bd-a876db038534 2b5a1477dd9800955ae184995b53e0e7 { 'aliquot_tag': 'ALQ_a098480', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-07439.WGS.Nbc C3L-07439 AML WGS buccal_normal CPT0409330001 CPT0409330001.WholeGenome.RP-2158.bam 52560119755 BAM aligned CPTAC3 1c203f7a-5a16-4c05-a9d1-4afbeb1d2b17 34dde5a5ec15f7a47340ef8d0f7ce3e3 { 'aliquot_tag': 'ALQ_668073fa', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-07439.WGS.Nbc.hg38 C3L-07439 AML WGS buccal_normal CPT0409330001 0efd2a71-a26d-41cf-99b4-dd0438320771_wgs_gdc_realn.bam 154859851406 BAM harmonized CPTAC3 8f38803a-d993-4cf9-a78b-121bb76b10d0 8e0f23d7cbf6ce53147d052dbe772b63 { 'aliquot_tag': 'ALQ_668073fa', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-07439.WGS.Tpb C3L-07439 AML WGS tumor_peripheral_blood CPT0409360002 CPT0409360002.WholeGenome.RP-2158.bam 50005341006 BAM aligned CPTAC3 b1c9ca06-e545-4be0-b6fd-57a9d5cc8221 f8156680b0d406d407871f72e6b8ae0a { 'aliquot_tag': 'ALQ_3769ad30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07439.WGS.Tpb.hg38 C3L-07439 AML WGS tumor_peripheral_blood CPT0409360002 97c06526-e9d5-4da9-9a93-f56443ea8c0b_wgs_gdc_realn.bam 149168323555 BAM harmonized CPTAC3 e8607566-c0aa-40a6-9b90-263e0ab072b1 3b014e27c6ca6296220af36d2a394454 { 'aliquot_tag': 'ALQ_3769ad30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-07439.WXS.Nbc C3L-07439 AML WXS buccal_normal CPT0409330001 CPT0409330001.WholeExome.RP-1303.bam 24435246882 BAM aligned CPTAC3 9cd320ff-ce98-4e17-a6bb-b5f3bf9083dc 023bcdee9f921f67b701c86599d487d7 { 'aliquot_tag': 'ALQ_668073fa', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-07439.WXS.Nbc.hg38 C3L-07439 AML WXS buccal_normal CPT0409330001 0efd2a71-a26d-41cf-99b4-dd0438320771_wxs_gdc_realn.bam 85771065654 BAM harmonized CPTAC3 eed05d67-1bf7-436f-bfdb-b07dd6beb964 74e3e5d9c7c8ebf919257fe2ece95f1a { 'aliquot_tag': 'ALQ_668073fa', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-07439.WXS.Tpb C3L-07439 AML WXS tumor_peripheral_blood CPT0409360002 CPT0409360002.WholeExome.RP-1303.bam 24945939921 BAM aligned CPTAC3 57f58bb4-54c3-4331-a72d-67a0561eca98 07756efe1f1a96dcbb254fa31679d464 { 'aliquot_tag': 'ALQ_3769ad30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3L-07439.WXS.Tpb.hg38 C3L-07439 AML WXS tumor_peripheral_blood CPT0409360002 97c06526-e9d5-4da9-9a93-f56443ea8c0b_wxs_gdc_realn.bam 34896018172 BAM harmonized CPTAC3 c2f2bdfe-749a-4ba2-bd39-fee94d5b2e30 2d1784670cc5931edb214cbbaeb5810a { 'aliquot_tag': 'ALQ_3769ad30', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3L-07490.MethArray.Green.Tbm C3L-07490 AML Methylation Array tumor_bone_marrow CPT0413350002 205555390128_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 7a2f2d6b-a7d4-4b18-a5a4-63f485025570 7d0de35217e92d2f28cc11844581632c { 'aliquot_tag': 'ALQ_18138830', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-07490.MethArray.Red.Tbm C3L-07490 AML Methylation Array tumor_bone_marrow CPT0413350002 205555390128_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 f359d895-7a5b-4c09-809d-9cbdc63a8128 0add2784f43acd747a1c410199aaf597 { 'aliquot_tag': 'ALQ_18138830', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-07490.miRNA-Seq.Tbm C3L-07490 AML miRNA-Seq tumor_bone_marrow CPT0413360002 210702_UNC32-K00270_0289_AHKJ22BBXY_CACTCA_S29_L005_R1_001.unaln.bam 179381519 BAM unaligned CPTAC3 f13a0eae-a044-4414-acd2-81068f92f0f9 786e8aa16cc7c57f58ddb68b19435b9a { 'aliquot_tag': 'ALQ_5fb3f2e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-07490.RNA-Seq.R1_L001.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 3720404856 FASTQ R1_L001 unaligned CPTAC3 2ebf6805-a5c8-43d5-8fee-730861c13580 36710ec306d9ad0ea4f63310d0a2c82c { 'aliquot_tag': 'ALQ_5fb3f2e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3L-07490.RNA-Seq.R2_L001.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 4031405226 FASTQ R2_L001 unaligned CPTAC3 3215eaf9-a581-4e1b-b71b-3c96b7876cba 6cfa1b63a61ae91cb2e3548fc6150c44 { 'aliquot_tag': 'ALQ_5fb3f2e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07490.miRNA-Seq.Tbm.hg38 C3L-07490 AML miRNA-Seq tumor_bone_marrow CPT0413360002 496ed66a-2355-47eb-ad9d-5cda0397c7b2_mirnaseq_gdc_realn.bam 188896528 BAM harmonized CPTAC3 fbbe1717-1692-4530-8b49-15b51c269402 6a216adaa4afc4e988de2b2653c3a5e7 { 'aliquot_tag': 'ALQ_5fb3f2e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07490.RNA-Seq.chimeric.Tbm.hg38 C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 bf6809cb-23f7-4e29-b93d-4e8d0c3a42d0.rna_seq.chimeric.gdc_realn.bam 194098252 BAM chimeric harmonized CPTAC3 b56723a7-2346-4c81-9fdb-5864fdf000ab 5191a90760624cd2d17126b84827e962 { 'aliquot_tag': 'ALQ_5fb3f2e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07490.RNA-Seq.genomic.Tbm.hg38 C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 bf6809cb-23f7-4e29-b93d-4e8d0c3a42d0.rna_seq.genomic.gdc_realn.bam 8865670253 BAM genomic harmonized CPTAC3 deb0c477-4194-44c3-9ffc-79e0d217c575 136573030310ec67b99213822cab529d { 'aliquot_tag': 'ALQ_5fb3f2e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07490.RNA-Seq.R1_L001.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 3720404856 FASTQ R1_L001 unaligned CPTAC3 2ebf6805-a5c8-43d5-8fee-730861c13580 36710ec306d9ad0ea4f63310d0a2c82c { 'aliquot_tag': 'ALQ_5fb3f2e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L001' } +C3L-07490.RNA-Seq.R2_L001.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 4031405226 FASTQ R2_L001 unaligned CPTAC3 3215eaf9-a581-4e1b-b71b-3c96b7876cba 6cfa1b63a61ae91cb2e3548fc6150c44 { 'aliquot_tag': 'ALQ_5fb3f2e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L001' } +C3L-07490.RNA-Seq.transcriptome.Tbm.hg38 C3L-07490 AML RNA-Seq tumor_bone_marrow CPT0413360002 bf6809cb-23f7-4e29-b93d-4e8d0c3a42d0.rna_seq.transcriptome.gdc_realn.bam 8061105399 BAM transcriptome harmonized CPTAC3 28c27d89-b22d-4c04-af02-c3688367cac7 d9209bd1c4d5887bb3858e48f4741be5 { 'aliquot_tag': 'ALQ_5fb3f2e0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-07490.WGS.Nbc C3L-07490 AML WGS buccal_normal CPT0413320001 CPT0413320001.WholeGenome.RP-2158.bam 69601657577 BAM aligned CPTAC3 16a35b27-7141-41ab-914a-0c546541377f 2f915bf176d1f04ca062f5e074d48d6f { 'aliquot_tag': 'ALQ_333a059a', 'gdc_sample_type': 'Buccal Cell Normal' } +C3L-07490.WGS.Nbc.hg38 C3L-07490 AML WGS buccal_normal CPT0413320001 c502ce9b-dc6f-4707-bfdb-b16ec51de8b9_wgs_gdc_realn.bam 203974244131 BAM harmonized CPTAC3 6a7bc4a4-fbca-48ac-9c0d-c65bfbddbb8d 5ab45898c09355f64da1c18a69a13b32 { 'aliquot_tag': 'ALQ_333a059a', 'gdc_sample_type': 'Buccal Cell Normal' } C3L-07490.WGS.Tbm C3L-07490 AML WGS tumor_bone_marrow CPT0413350002 CPT0413350002.WholeGenome.RP-2158.bam 60421758045 BAM aligned CPTAC3 b9149ef7-4087-44d7-9c74-1ef27aedebf2 156144d24680b3a44d6af733262ba486 { 'aliquot_tag': 'ALQ_18138830', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07490.WGS.Tbm.hg38 C3L-07490 AML WGS tumor_bone_marrow CPT0413350002 62192ce0-2d9a-46d0-95a5-cd830486ea9c_wgs_gdc_realn.bam 176588748562 BAM harmonized CPTAC3 036102b0-a019-45e8-b9db-ea99632f6ad5 88ab345a94fb82932718332995380a61 { 'aliquot_tag': 'ALQ_18138830', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-07490.WXS.Tbm C3L-07490 AML WXS tumor_bone_marrow CPT0413350002 CPT0413350002.WholeExome.RP-1303.bam 30811613444 BAM aligned CPTAC3 3d1cd92b-4657-496a-a287-0dbbe1b08799 0f1f3f851f7cf4b9a41a67b19fb85d44 { 'aliquot_tag': 'ALQ_18138830', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3L-07490.WXS.Tbm.hg38 C3L-07490 AML WXS tumor_bone_marrow CPT0413350002 62192ce0-2d9a-46d0-95a5-cd830486ea9c_wxs_gdc_realn.bam 42160884574 BAM harmonized CPTAC3 1931582d-980b-4481-b433-4f97b84e40ea ce5d9ec24792eddb3f2d295b03c0d329 { 'aliquot_tag': 'ALQ_18138830', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3L-07611.MethArray.Green.T C3L-07611 GBM Methylation Array tumor CPT0408500007 204930640111_R05C01_Grn.idat 13677956 IDAT Green NA CPTAC3 a80351fb-be92-4aae-9b24-8c2e2370af27 9fdf36237e405087ed3636a0d0f03061 { 'aliquot_tag': 'ALQ_b86d44b6', 'gdc_sample_type': 'Primary Tumor' } C3L-07611.MethArray.Red.T C3L-07611 GBM Methylation Array tumor CPT0408500007 204930640111_R05C01_Red.idat 13677956 IDAT Red NA CPTAC3 400527c0-c3b5-46c0-a60e-1cb3f76ee084 87564f3c61ba792f87175c055cefec8d { 'aliquot_tag': 'ALQ_b86d44b6', 'gdc_sample_type': 'Primary Tumor' } C3L-07611.miRNA-Seq.T C3L-07611 GBM miRNA-Seq tumor CPT0408500010 210702_UNC32-K00270_0289_AHKJ22BBXY_TCATTC_S37_L005_R1_001.unaln.bam 204155380 BAM unaligned CPTAC3 c4abe2f9-b7a8-4da2-a185-9be4ff656788 0dc4074a99e2737514957892bcc88998 { 'aliquot_tag': 'ALQ_3f12e054', 'gdc_sample_type': 'Primary Tumor' } -C3L-07611.RNA-Seq.R1_L004.T C3L-07611 GBM RNA-Seq tumor CPT0408500010 210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R1_001.fastq.gz 3891845626 FASTQ R1_L004 unaligned CPTAC3 a19a4590-1bba-4407-8833-4c424dbd4e7a c0d3e2e4ca88dabd470de07dcca9c6ad { 'aliquot_tag': 'ALQ_3f12e054', 'gdc_sample_type': 'Primary Tumor' } -C3L-07611.RNA-Seq.R2_L004.T C3L-07611 GBM RNA-Seq tumor CPT0408500010 210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R2_001.fastq.gz 4019885625 FASTQ R2_L004 unaligned CPTAC3 715c0803-92be-4427-84a0-318fb948c958 76da8036d9027f6f9f0e7d3e494e6f43 { 'aliquot_tag': 'ALQ_3f12e054', 'gdc_sample_type': 'Primary Tumor' } +C3L-07611.miRNA-Seq.T.hg38 C3L-07611 GBM miRNA-Seq tumor CPT0408500010 bef3b046-b164-4256-b897-72cddd0633fd_mirnaseq_gdc_realn.bam 221187925 BAM harmonized CPTAC3 070bcd79-11ca-4b65-8a39-3e9bdafb6d57 ab46278cef78fb338a44918383058034 { 'aliquot_tag': 'ALQ_3f12e054', 'gdc_sample_type': 'Primary Tumor' } +C3L-07611.RNA-Seq.chimeric.T.hg38 C3L-07611 GBM RNA-Seq tumor CPT0408500010 a5fb29e0-96b5-4635-ae50-589290ca2245.rna_seq.chimeric.gdc_realn.bam 228015781 BAM chimeric harmonized CPTAC3 afc0c0bf-c7b3-41e5-a155-36220c735099 7a2a110f50a191cf69320bacdd6ac793 { 'aliquot_tag': 'ALQ_3f12e054', 'gdc_sample_type': 'Primary Tumor' } +C3L-07611.RNA-Seq.genomic.T.hg38 C3L-07611 GBM RNA-Seq tumor CPT0408500010 a5fb29e0-96b5-4635-ae50-589290ca2245.rna_seq.genomic.gdc_realn.bam 8082724853 BAM genomic harmonized CPTAC3 2b301d6a-175a-42f8-a550-0f2ed137d045 e3d6db89e56b5f6e34d1523782dcc6f3 { 'aliquot_tag': 'ALQ_3f12e054', 'gdc_sample_type': 'Primary Tumor' } +C3L-07611.RNA-Seq.R1_L004.T C3L-07611 GBM RNA-Seq tumor CPT0408500010 210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R1_001.fastq.gz 3891845626 FASTQ R1_L004 unaligned CPTAC3 a19a4590-1bba-4407-8833-4c424dbd4e7a c0d3e2e4ca88dabd470de07dcca9c6ad { 'aliquot_tag': 'ALQ_3f12e054', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3L-07611.RNA-Seq.R2_L004.T C3L-07611 GBM RNA-Seq tumor CPT0408500010 210708_UNC32-K00270_0290_BHLLHHBBXY_CTGCTTCC-GATAGATC_S14_L004_R2_001.fastq.gz 4019885625 FASTQ R2_L004 unaligned CPTAC3 715c0803-92be-4427-84a0-318fb948c958 76da8036d9027f6f9f0e7d3e494e6f43 { 'aliquot_tag': 'ALQ_3f12e054', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3L-07611.RNA-Seq.transcriptome.T.hg38 C3L-07611 GBM RNA-Seq tumor CPT0408500010 a5fb29e0-96b5-4635-ae50-589290ca2245.rna_seq.transcriptome.gdc_realn.bam 10683144478 BAM transcriptome harmonized CPTAC3 48976778-bb2a-42d5-a0b0-7181f43c358b c741ceb6bcd83743ec6c525c636457f8 { 'aliquot_tag': 'ALQ_3f12e054', 'gdc_sample_type': 'Primary Tumor' } C3L-07611.WGS.N C3L-07611 GBM WGS blood_normal CPT0408580002 CPT0408580002.WholeGenome.RP-2158.bam 29383404617 BAM aligned CPTAC3 1679fa71-9071-4fbd-935a-f4e78426660b 6fa1d2f9df253583fabfacdd1b670953 { 'aliquot_tag': 'ALQ_f877fbf8', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-07611.WGS.N.hg38 C3L-07611 GBM WGS blood_normal CPT0408580002 3c805b24-a57c-4477-996b-927a7fe9ccb2_wgs_gdc_realn.bam 86255744603 BAM harmonized CPTAC3 0ef89055-e885-438d-9e05-f60f89725367 dafb20f5b916b858ac33e2cfe5a7fd9e { 'aliquot_tag': 'ALQ_f877fbf8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-07611.WGS.T C3L-07611 GBM WGS tumor CPT0408500007 CPT0408500007.WholeGenome.RP-2158.bam 26632148378 BAM aligned CPTAC3 89f9ad5f-5d86-4051-a85d-38d4aadfa686 4acdaaf5e23081f50d9e79cbb351672d { 'aliquot_tag': 'ALQ_b86d44b6', 'gdc_sample_type': 'Primary Tumor' } +C3L-07611.WGS.T.hg38 C3L-07611 GBM WGS tumor CPT0408500007 f135e074-b46a-473b-8015-439c78e8f6fd_wgs_gdc_realn.bam 77090269449 BAM harmonized CPTAC3 c86ee9c9-faff-49f4-b731-53751cc80228 5b73a27fd33f83b4707f78b35fcb4721 { 'aliquot_tag': 'ALQ_b86d44b6', 'gdc_sample_type': 'Primary Tumor' } C3L-07611.WXS.N C3L-07611 GBM WXS blood_normal CPT0408580002 CPT0408580002.WholeExome.RP-1303.bam 26865804794 BAM aligned CPTAC3 1b7849bc-141f-4fcd-9d8e-050d04c9d724 e7a0db6a290e4173d0dbcf555889ba28 { 'aliquot_tag': 'ALQ_f877fbf8', 'gdc_sample_type': 'Blood Derived Normal' } +C3L-07611.WXS.N.hg38 C3L-07611 GBM WXS blood_normal CPT0408580002 3c805b24-a57c-4477-996b-927a7fe9ccb2_wxs_gdc_realn.bam 37940973867 BAM harmonized CPTAC3 49d7c1cf-db69-41a6-9cbb-88f382ced875 9e26d5e9e2d06f36221e8cbccc43c222 { 'aliquot_tag': 'ALQ_f877fbf8', 'gdc_sample_type': 'Blood Derived Normal' } C3L-07611.WXS.T C3L-07611 GBM WXS tumor CPT0408500007 CPT0408500007.WholeExome.RP-1303.bam 22260035637 BAM aligned CPTAC3 9eb37687-fdb1-4d97-8fe5-2a7a374d3395 317a4d5c2dd08fd1b7abd302e4b4be75 { 'aliquot_tag': 'ALQ_b86d44b6', 'gdc_sample_type': 'Primary Tumor' } +C3L-07611.WXS.T.hg38 C3L-07611 GBM WXS tumor CPT0408500007 f135e074-b46a-473b-8015-439c78e8f6fd_wxs_gdc_realn.bam 30995726684 BAM harmonized CPTAC3 66ea66b9-4620-4c09-a59d-f9b1c0bcb09f eb067415cf8805b6c6c4ac02bd46a229 { 'aliquot_tag': 'ALQ_b86d44b6', 'gdc_sample_type': 'Primary Tumor' } C3N-00148.DUP_495404aa.MethArray.Green.T C3N-00148 CCRCC Methylation Array tumor CPT0081590009 204367490043_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 f6eaed9e-16f0-4b1f-bb96-86a35c644127 7b1e7d7c0280478b32bcb2bdcac4ce1e { 'aliquot_tag': 'DUP_495404aa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_495404aa.MethArray.Red.T C3N-00148 CCRCC Methylation Array tumor CPT0081590009 204367490043_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 955ef901-2188-49a2-9201-11cd2f8094f9 514408ecda95e0797ad307ad65f000fc { 'aliquot_tag': 'DUP_495404aa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_495404aa.WGS.T C3N-00148 CCRCC WGS tumor CPT0081590009 CPT0081590009.WholeGenome.RP-2158.bam 25242046375 BAM aligned CPTAC3 ab8ca6d2-61be-4af8-816c-818a37171bf1 3916d1d0dee49702870a63f9b69062a1 { 'aliquot_tag': 'DUP_495404aa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -18590,9 +20345,9 @@ C3N-00148.DUP_495404aa.WXS.T.hg38 C3N-00148 CCRCC WXS tumor CPT0081590009 0dfc54 C3N-00148.DUP_6f0f2054.miRNA-Seq.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081610006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATGGC_S27_L004_R1_001.unaln.bam 216922501 BAM unaligned CPTAC3 27fa6e25-69ea-46ca-9d7d-bcf6a2cbdd94 0a6a241e6c4a5de5a6600c00af5c611a { 'aliquot_tag': 'DUP_6f0f2054', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_6f0f2054.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081610006 780ece72-1465-41f6-a95c-950293545921_mirnaseq_gdc_realn.bam 239179433 BAM harmonized CPTAC3 f0b9a47a-cbf6-4d99-b530-1c2d327e5870 97cb701680cfd1bb04722e8bb8dc7d3a { 'aliquot_tag': 'DUP_6f0f2054', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_6f0f2054.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 eb28bb87-5826-48e2-88e0-8774cc2e0d09.rna_seq.chimeric.gdc_realn.bam 239976045 BAM chimeric harmonized CPTAC3 bf8e68bb-33c6-4c97-b478-287d5e144347 4adba2658d6139efa92e3c90c5cae44a { 'aliquot_tag': 'DUP_6f0f2054', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00148.DUP_6f0f2054.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 eb28bb87-5826-48e2-88e0-8774cc2e0d09.rna_seq.genomic.gdc_realn.bam 8145058930 BAM genomic harmonized CPTAC3 2cb5862c-1fde-4ffe-8bfe-5b13230c8999 5bebb95258cfca7db5a1790e2bfd932e { 'aliquot_tag': 'DUP_6f0f2054', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00148.DUP_6f0f2054.RNA-Seq.R1_L004.T C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGTTAGAA-TTCAGGTC_S14_L004_R1_001.fastq.gz 3701454243 FASTQ R1_L004 unaligned CPTAC3 2cdd2b94-10a0-41f6-adb6-6aa717245a40 9924a42947b6c3472d5f50694af315ba { 'aliquot_tag': 'DUP_6f0f2054', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00148.DUP_6f0f2054.RNA-Seq.R2_L004.T C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGTTAGAA-TTCAGGTC_S14_L004_R2_001.fastq.gz 4536249627 FASTQ R2_L004 unaligned CPTAC3 65c1a61a-ffe3-4e34-96cd-1d5452ce0d90 4a6b49a51f18efb2389b4353ca8f6a10 { 'aliquot_tag': 'DUP_6f0f2054', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00148.DUP_6f0f2054.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 eb28bb87-5826-48e2-88e0-8774cc2e0d09.rna_seq.genomic.gdc_realn.bam 8145058930 BAM genomic harmonized CPTAC3 cfd59fcc-314a-4f0f-97c2-e616dfd333db 5bebb95258cfca7db5a1790e2bfd932e { 'aliquot_tag': 'DUP_6f0f2054', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00148.DUP_6f0f2054.RNA-Seq.R1_L004.T C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGTTAGAA-TTCAGGTC_S14_L004_R1_001.fastq.gz 3701454243 FASTQ R1_L004 unaligned CPTAC3 2cdd2b94-10a0-41f6-adb6-6aa717245a40 9924a42947b6c3472d5f50694af315ba { 'aliquot_tag': 'DUP_6f0f2054', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3N-00148.DUP_6f0f2054.RNA-Seq.R2_L004.T C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 200519_UNC31-K00269_0279_AHH5VTBBXY_CGTTAGAA-TTCAGGTC_S14_L004_R2_001.fastq.gz 4536249627 FASTQ R2_L004 unaligned CPTAC3 65c1a61a-ffe3-4e34-96cd-1d5452ce0d90 4a6b49a51f18efb2389b4353ca8f6a10 { 'aliquot_tag': 'DUP_6f0f2054', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3N-00148.DUP_6f0f2054.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081610006 eb28bb87-5826-48e2-88e0-8774cc2e0d09.rna_seq.transcriptome.gdc_realn.bam 9183359665 BAM transcriptome harmonized CPTAC3 cd2d42b3-6e41-473d-b0d9-bbc88406fda2 8744d924e151c968596601160a04a0df { 'aliquot_tag': 'DUP_6f0f2054', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_74342d1a.MethArray.Green.T C3N-00148 CCRCC Methylation Array tumor CPT0081580009 204367490093_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 54703a27-f4ab-4cbb-adea-1242035925df 800143be9a968c84f9d92ac57de70c9e { 'aliquot_tag': 'DUP_74342d1a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_74342d1a.MethArray.Red.T C3N-00148 CCRCC Methylation Array tumor CPT0081580009 204367490093_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 ecd429b3-fc1c-4671-959e-8775ec4cef9e 768948b32510a948e28b36e35d3b7064 { 'aliquot_tag': 'DUP_74342d1a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -18603,16 +20358,16 @@ C3N-00148.DUP_74342d1a.WXS.T.hg38 C3N-00148 CCRCC WXS tumor CPT0081580009 9173e9 C3N-00148.DUP_d9eb193b.miRNA-Seq.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081590006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAGGCG_S4_L004_R1_001.unaln.bam 215706607 BAM unaligned CPTAC3 cb9a8508-6510-457a-9740-817831f8215e da3de1bf56ceb1edf0227b625c8fa00e { 'aliquot_tag': 'DUP_d9eb193b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_d9eb193b.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081590006 70f8e422-e31d-41a0-bfa3-394b48225d0a_mirnaseq_gdc_realn.bam 240358408 BAM harmonized CPTAC3 f1e0d5e7-652c-4a33-815a-ede62c3adc24 50a328154c46927e0406c92ed8328d14 { 'aliquot_tag': 'DUP_d9eb193b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_d9eb193b.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 934cc3f4-e7b3-4052-9179-6d4de46ec44e.rna_seq.chimeric.gdc_realn.bam 104693658 BAM chimeric harmonized CPTAC3 b73d90e9-9991-4dc7-a566-a3b4aac42daf 523a6509997118051f87c7f964ba47a7 { 'aliquot_tag': 'DUP_d9eb193b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00148.DUP_d9eb193b.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 934cc3f4-e7b3-4052-9179-6d4de46ec44e.rna_seq.genomic.gdc_realn.bam 8633244917 BAM genomic harmonized CPTAC3 c19a9b7c-d91c-417d-8f75-b30c39227b1f e8f91bfc13415f291f6dc453c869aa67 { 'aliquot_tag': 'DUP_d9eb193b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00148.DUP_d9eb193b.RNA-Seq.R1_L004.T C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 200519_UNC31-K00269_0279_AHH5VTBBXY_TACCGAGG-CCTGAACT_S16_L004_R1_001.fastq.gz 4104332900 FASTQ R1_L004 unaligned CPTAC3 76502b9a-7e4d-4688-a0e9-18f695e7e2b8 7896a34089af26f5ed636b70ad92942d { 'aliquot_tag': 'DUP_d9eb193b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00148.DUP_d9eb193b.RNA-Seq.R2_L004.T C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 200519_UNC31-K00269_0279_AHH5VTBBXY_TACCGAGG-CCTGAACT_S16_L004_R2_001.fastq.gz 4888105949 FASTQ R2_L004 unaligned CPTAC3 7872472a-affb-433b-bf1f-b492058828bb 21cee91f1d499b83ec5b4cd7018c7429 { 'aliquot_tag': 'DUP_d9eb193b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00148.DUP_d9eb193b.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 934cc3f4-e7b3-4052-9179-6d4de46ec44e.rna_seq.genomic.gdc_realn.bam 8633244917 BAM genomic harmonized CPTAC3 c44c6ab8-4038-4ef3-838c-5e8e1900e46c e8f91bfc13415f291f6dc453c869aa67 { 'aliquot_tag': 'DUP_d9eb193b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00148.DUP_d9eb193b.RNA-Seq.R1_L004.T C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 200519_UNC31-K00269_0279_AHH5VTBBXY_TACCGAGG-CCTGAACT_S16_L004_R1_001.fastq.gz 4104332900 FASTQ R1_L004 unaligned CPTAC3 76502b9a-7e4d-4688-a0e9-18f695e7e2b8 7896a34089af26f5ed636b70ad92942d { 'aliquot_tag': 'DUP_d9eb193b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3N-00148.DUP_d9eb193b.RNA-Seq.R2_L004.T C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 200519_UNC31-K00269_0279_AHH5VTBBXY_TACCGAGG-CCTGAACT_S16_L004_R2_001.fastq.gz 4888105949 FASTQ R2_L004 unaligned CPTAC3 7872472a-affb-433b-bf1f-b492058828bb 21cee91f1d499b83ec5b4cd7018c7429 { 'aliquot_tag': 'DUP_d9eb193b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3N-00148.DUP_d9eb193b.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081590006 934cc3f4-e7b3-4052-9179-6d4de46ec44e.rna_seq.transcriptome.gdc_realn.bam 10437458004 BAM transcriptome harmonized CPTAC3 c1767a7a-1d5f-4e56-8e58-3094d04010f4 74e8c015930c3006b246f1140278b46a { 'aliquot_tag': 'DUP_d9eb193b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_e48b308b.miRNA-Seq.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081580006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACTCA_S26_L004_R1_001.unaln.bam 164986231 BAM unaligned CPTAC3 f8ac9419-3f47-4dbf-8714-3d727d046dfa ebbb608ec5a7e0342dd3b109e33d51bf { 'aliquot_tag': 'DUP_e48b308b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_e48b308b.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081580006 80022834-d392-4fad-87e1-9576956c251a_mirnaseq_gdc_realn.bam 183335413 BAM harmonized CPTAC3 7195daa7-87e9-4605-b25c-42c6eb4c25cc 71ba9392a17ddae2b92e161db91ace1b { 'aliquot_tag': 'DUP_e48b308b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_e48b308b.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 682f51f8-5d1f-4b6f-909f-3ffb2645ebc3.rna_seq.chimeric.gdc_realn.bam 188406815 BAM chimeric harmonized CPTAC3 28738bf5-afef-48ef-a16c-496004dd90cc 961a327119c3a1fa75a6134b3ab468d6 { 'aliquot_tag': 'DUP_e48b308b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00148.DUP_e48b308b.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 682f51f8-5d1f-4b6f-909f-3ffb2645ebc3.rna_seq.genomic.gdc_realn.bam 7438515443 BAM genomic harmonized CPTAC3 f7977abc-9cba-4f7e-b4e4-245be90356f7 5065adef1cc0154b0ed8ee12ae0297ae { 'aliquot_tag': 'DUP_e48b308b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00148.DUP_e48b308b.RNA-Seq.R1_L003.T C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 200519_UNC31-K00269_0279_AHH5VTBBXY_AATGCCTC-TCGATCCA_S9_L003_R1_001.fastq.gz 3662990781 FASTQ R1_L003 unaligned CPTAC3 7057f456-2a17-45fc-9ef7-15142e833631 1c2a6f305f7a8fb8ed2e8d30384b8dad { 'aliquot_tag': 'DUP_e48b308b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00148.DUP_e48b308b.RNA-Seq.R2_L003.T C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 200519_UNC31-K00269_0279_AHH5VTBBXY_AATGCCTC-TCGATCCA_S9_L003_R2_001.fastq.gz 4251757262 FASTQ R2_L003 unaligned CPTAC3 2932e604-2fe0-4aa2-90c6-186a4dd73334 217797df8e6e03870969e86d1c8f222c { 'aliquot_tag': 'DUP_e48b308b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00148.DUP_e48b308b.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 682f51f8-5d1f-4b6f-909f-3ffb2645ebc3.rna_seq.genomic.gdc_realn.bam 7438515443 BAM genomic harmonized CPTAC3 fdfb1f33-afb6-47a3-b22c-0349706b3081 5065adef1cc0154b0ed8ee12ae0297ae { 'aliquot_tag': 'DUP_e48b308b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00148.DUP_e48b308b.RNA-Seq.R1_L003.T C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 200519_UNC31-K00269_0279_AHH5VTBBXY_AATGCCTC-TCGATCCA_S9_L003_R1_001.fastq.gz 3662990781 FASTQ R1_L003 unaligned CPTAC3 7057f456-2a17-45fc-9ef7-15142e833631 1c2a6f305f7a8fb8ed2e8d30384b8dad { 'aliquot_tag': 'DUP_e48b308b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L003' } +C3N-00148.DUP_e48b308b.RNA-Seq.R2_L003.T C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 200519_UNC31-K00269_0279_AHH5VTBBXY_AATGCCTC-TCGATCCA_S9_L003_R2_001.fastq.gz 4251757262 FASTQ R2_L003 unaligned CPTAC3 2932e604-2fe0-4aa2-90c6-186a4dd73334 217797df8e6e03870969e86d1c8f222c { 'aliquot_tag': 'DUP_e48b308b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L003' } C3N-00148.DUP_e48b308b.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081580006 682f51f8-5d1f-4b6f-909f-3ffb2645ebc3.rna_seq.transcriptome.gdc_realn.bam 8864829953 BAM transcriptome harmonized CPTAC3 7d82691a-95a8-4c89-acc4-6444c65fd505 e7ecdb0ce758e916eb2472fb663fb7a2 { 'aliquot_tag': 'DUP_e48b308b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_ffb03dc5.MethArray.Green.T C3N-00148 CCRCC Methylation Array tumor CPT0081610009 204372030072_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 605b2e6a-941f-4a09-80f6-682edbc8f380 bba8f29840919317560eea073116ea5a { 'aliquot_tag': 'DUP_ffb03dc5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00148.DUP_ffb03dc5.MethArray.Red.T C3N-00148 CCRCC Methylation Array tumor CPT0081610009 204372030072_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 67dcaa43-600e-4513-aa8a-fa39dab8a129 bf7b5c2619bec65d9412abbded9e54b5 { 'aliquot_tag': 'DUP_ffb03dc5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -18630,26 +20385,26 @@ C3N-00148.miRNA-Seq.T C3N-00148 CCRCC miRNA-Seq tumor CPT0081600009 181012_UNC32 C3N-00148.miRNA-Seq.T.hg38 C3N-00148 CCRCC miRNA-Seq tumor CPT0081600009 c0ee240d-4281-41a6-aa8f-00226c6e33b5_mirnaseq_gdc_realn.bam 261759217 BAM harmonized CPTAC3 3ee5325a-4b5d-4317-906a-6b5eaab4edd0 9338f7f7e790234fe0a3c08f24e75026 { 'aliquot_tag': 'ALQ_c2d01475', 'gdc_sample_type': 'Primary Tumor' } C3N-00148.RNA-Seq.chimeric.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 08c4c108-a518-4479-bddd-0e32f3faff23.rna_seq.chimeric.gdc_realn.bam 65294643 BAM chimeric harmonized CPTAC3 d9986361-69c1-45fe-94d6-b78b908b9813 eac3cac502ec27bdec6ad75c3c69dc43 { 'aliquot_tag': 'ALQ_28af5a84', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00148.RNA-Seq.chimeric.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 6a3e428d-5a67-4297-a679-e186f08f800f.rna_seq.chimeric.gdc_realn.bam 53975736 BAM chimeric harmonized CPTAC3 6cbcff00-af84-41fc-acaa-0381e791aabe 797251f3904d20455d6ee67f812bf379 { 'aliquot_tag': 'ALQ_c2d01475', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.RNA-Seq.genomic.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 08c4c108-a518-4479-bddd-0e32f3faff23.rna_seq.genomic.gdc_realn.bam 9264727882 BAM genomic harmonized CPTAC3 d36c09e6-c771-41bf-9618-20a1f414b3f9 68019d3113994a2bdf4072d01dfa43d1 { 'aliquot_tag': 'ALQ_28af5a84', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00148.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 6a3e428d-5a67-4297-a679-e186f08f800f.rna_seq.genomic.gdc_realn.bam 9902160939 BAM genomic harmonized CPTAC3 d3464624-d52e-42ee-9535-826ac0d49253 6b547d5e9f77bdd76b3674c8867d332d { 'aliquot_tag': 'ALQ_c2d01475', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.RNA-Seq.R1_L001.A C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L001_R1_001.fastq.gz 4500742385 FASTQ R1_L001 unaligned CPTAC3 e8912d94-cb0d-43a9-8162-74cfaa687f6b 56a7d6c797c120c031572aef5a4fcba5 { 'aliquot_tag': 'ALQ_28af5a84', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00148.RNA-Seq.R1_L008.T C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L008_R1_001.fastq.gz 4810717249 FASTQ R1_L008 unaligned CPTAC3 48e2576c-57dd-4e80-8362-7c35daed4204 53542237cb90bbc646ab391435e12226 { 'aliquot_tag': 'ALQ_c2d01475', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.RNA-Seq.R2_L001.A C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L001_R2_001.fastq.gz 4876089984 FASTQ R2_L001 unaligned CPTAC3 295e5db0-2734-4385-9867-95978059c72f 9ae22a8d40033409dcbe25b579632123 { 'aliquot_tag': 'ALQ_28af5a84', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00148.RNA-Seq.R2_L008.T C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L008_R2_001.fastq.gz 5280330533 FASTQ R2_L008 unaligned CPTAC3 a250f5fc-fc5b-45e1-83b7-9139dd06398e d32f84107b3454e1642c3f1086758ffe { 'aliquot_tag': 'ALQ_c2d01475', 'gdc_sample_type': 'Primary Tumor' } +C3N-00148.RNA-Seq.genomic.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 08c4c108-a518-4479-bddd-0e32f3faff23.rna_seq.genomic.gdc_realn.bam 9264727882 BAM genomic harmonized CPTAC3 2859d494-26d1-4f93-9a1e-c5adc3a3a66d 68019d3113994a2bdf4072d01dfa43d1 { 'aliquot_tag': 'ALQ_28af5a84', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00148.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 6a3e428d-5a67-4297-a679-e186f08f800f.rna_seq.genomic.gdc_realn.bam 9902160939 BAM genomic harmonized CPTAC3 9f86ce00-fc2e-4662-800d-05ebab6e5141 6b547d5e9f77bdd76b3674c8867d332d { 'aliquot_tag': 'ALQ_c2d01475', 'gdc_sample_type': 'Primary Tumor' } +C3N-00148.RNA-Seq.R1_L001.A C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L001_R1_001.fastq.gz 4500742385 FASTQ R1_L001 unaligned CPTAC3 e8912d94-cb0d-43a9-8162-74cfaa687f6b 56a7d6c797c120c031572aef5a4fcba5 { 'aliquot_tag': 'ALQ_28af5a84', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-00148.RNA-Seq.R1_L008.T C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L008_R1_001.fastq.gz 4810717249 FASTQ R1_L008 unaligned CPTAC3 48e2576c-57dd-4e80-8362-7c35daed4204 53542237cb90bbc646ab391435e12226 { 'aliquot_tag': 'ALQ_c2d01475', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00148.RNA-Seq.R2_L001.A C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L001_R2_001.fastq.gz 4876089984 FASTQ R2_L001 unaligned CPTAC3 295e5db0-2734-4385-9867-95978059c72f 9ae22a8d40033409dcbe25b579632123 { 'aliquot_tag': 'ALQ_28af5a84', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-00148.RNA-Seq.R2_L008.T C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L008_R2_001.fastq.gz 5280330533 FASTQ R2_L008 unaligned CPTAC3 a250f5fc-fc5b-45e1-83b7-9139dd06398e d32f84107b3454e1642c3f1086758ffe { 'aliquot_tag': 'ALQ_c2d01475', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00148.RNA-Seq.transcriptome.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal CPT0081620006 08c4c108-a518-4479-bddd-0e32f3faff23.rna_seq.transcriptome.gdc_realn.bam 10951576023 BAM transcriptome harmonized CPTAC3 13cb4e22-9a20-4388-98cc-3ada22a9da32 7271f6584cef2c827ea323d40c6a8216 { 'aliquot_tag': 'ALQ_28af5a84', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00148.RNA-Seq.transcriptome.T.hg38 C3N-00148 CCRCC RNA-Seq tumor CPT0081600009 6a3e428d-5a67-4297-a679-e186f08f800f.rna_seq.transcriptome.gdc_realn.bam 11528905049 BAM transcriptome harmonized CPTAC3 00ef0669-e3d9-4c02-9af3-903455dbe859 8fa11d2752df6897beebb629f5534990 { 'aliquot_tag': 'ALQ_c2d01475', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 20210623_WUSTL_TWFU-CPT0081580013-XBn1_1_ATGGCTTGTG+GAATGTTGTG_S3_L003_R1_001.fastq.gz 4545417676 FASTQ R1_L003 unaligned CPTAC3 b1b10e79-2b1d-4ef8-8b36-4be8f69f0a7c 77a44cb98278eb1e53fad6714265d20d { 'aliquot_tag': 'ALQ_8dfaf545', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081590013 20210623_WUSTL_TWFU-CPT0081590013-XBn1_1_TTCTCGATGA+TGTCGGGCAC_S4_L003_R1_001.fastq.gz 4782641146 FASTQ R1_L003 unaligned CPTAC3 bab6b2bb-f08e-45ba-adc4-f83638a80b5d 47789ffcf6f9ad3d24374fea0ab7b0b9 { 'aliquot_tag': 'ALQ_b09adcf5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+AGCCCGTAAC_S7_L003_R1_001.fastq.gz 2226966916 FASTQ R1_L003 unaligned CPTAC3 946d0aa0-3574-4d02-839f-78b2b5d40fa8 3823391e1de4b50664c40d7b1290db8a { 'aliquot_tag': 'ALQ_3b1ecc2a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+GTTACGGGCT_S4_L003_R1_001.fastq.gz 3116857723 FASTQ R1_L003 unaligned CPTAC3 bdd0aafc-9de4-4cec-8e78-cf1a61c1503b 87d03f41f948a011ec5fc43888af57eb { 'aliquot_tag': 'ALQ_3b1ecc2a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+AGGTGTCTGC_S7_L003_R1_001.fastq.gz 2729330431 FASTQ R1_L003 unaligned CPTAC3 6973e83e-2258-438b-8930-1cc7149ec62a 7abd0e4e16bfb8a6bdb94d8f599d6aeb { 'aliquot_tag': 'ALQ_67ee59a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+GCAGACACCT_S5_L003_R1_001.fastq.gz 3266690810 FASTQ R1_L003 unaligned CPTAC3 5e058d5d-614b-4f75-bd9b-f9e623f25bb2 0aa4d1a32c688d5bcc404abaf1a449c0 { 'aliquot_tag': 'ALQ_67ee59a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 20210623_WUSTL_TWFU-CPT0081580013-XBn1_1_ATGGCTTGTG+GAATGTTGTG_S3_L003_R2_001.fastq.gz 16324750458 FASTQ R2_L003 unaligned CPTAC3 517b282d-1f91-4d37-999f-1a86d84f466e 3de0b535ea35934be411ce1560cf6108 { 'aliquot_tag': 'ALQ_8dfaf545', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081590013 20210623_WUSTL_TWFU-CPT0081590013-XBn1_1_TTCTCGATGA+TGTCGGGCAC_S4_L003_R2_001.fastq.gz 4782641146 FASTQ R2_L003 unaligned CPTAC3 6ac52a76-b8da-4f73-82e6-985080acafc3 47789ffcf6f9ad3d24374fea0ab7b0b9 { 'aliquot_tag': 'ALQ_b09adcf5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+AGCCCGTAAC_S7_L003_R2_001.fastq.gz 7808630322 FASTQ R2_L003 unaligned CPTAC3 aff0b02f-54c3-477b-b378-b16b561f59b9 7c9001db35aa622bc9073f145fd2cbb5 { 'aliquot_tag': 'ALQ_3b1ecc2a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+GTTACGGGCT_S4_L003_R2_001.fastq.gz 11002906348 FASTQ R2_L003 unaligned CPTAC3 cc04ff73-6900-4928-885c-552cd8b11b7a f86593168fe72dca9765a868dc1a8c81 { 'aliquot_tag': 'ALQ_3b1ecc2a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+AGGTGTCTGC_S7_L003_R2_001.fastq.gz 9553422581 FASTQ R2_L003 unaligned CPTAC3 92e4f7f5-2dd1-4901-ac67-00de1bdb01dc 6c126ccff34770454566b3416fd48b7a { 'aliquot_tag': 'ALQ_67ee59a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+GCAGACACCT_S5_L003_R2_001.fastq.gz 11520663145 FASTQ R2_L003 unaligned CPTAC3 e6457d1b-b66c-4681-8420-6c1bb80e92d9 6741a5271692a91db8769147ecc40dd7 { 'aliquot_tag': 'ALQ_67ee59a', 'gdc_sample_type': 'Primary Tumor' } +C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 20210623_WUSTL_TWFU-CPT0081580013-XBn1_1_ATGGCTTGTG+GAATGTTGTG_S3_L003_R1_001.fastq.gz 4545417676 FASTQ R1_L003 unaligned CPTAC3 b1b10e79-2b1d-4ef8-8b36-4be8f69f0a7c 77a44cb98278eb1e53fad6714265d20d { 'aliquot_tag': 'ALQ_8dfaf545', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081590013 20210623_WUSTL_TWFU-CPT0081590013-XBn1_1_TTCTCGATGA+TGTCGGGCAC_S4_L003_R1_001.fastq.gz 4782641146 FASTQ R1_L003 unaligned CPTAC3 bab6b2bb-f08e-45ba-adc4-f83638a80b5d 47789ffcf6f9ad3d24374fea0ab7b0b9 { 'aliquot_tag': 'ALQ_b09adcf5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+AGCCCGTAAC_S7_L003_R1_001.fastq.gz 2226966916 FASTQ R1_L003 unaligned CPTAC3 946d0aa0-3574-4d02-839f-78b2b5d40fa8 3823391e1de4b50664c40d7b1290db8a { 'aliquot_tag': 'ALQ_3b1ecc2a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+GTTACGGGCT_S4_L003_R1_001.fastq.gz 3116857723 FASTQ R1_L003 unaligned CPTAC3 bdd0aafc-9de4-4cec-8e78-cf1a61c1503b 87d03f41f948a011ec5fc43888af57eb { 'aliquot_tag': 'ALQ_3b1ecc2a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+AGGTGTCTGC_S7_L003_R1_001.fastq.gz 2729330431 FASTQ R1_L003 unaligned CPTAC3 6973e83e-2258-438b-8930-1cc7149ec62a 7abd0e4e16bfb8a6bdb94d8f599d6aeb { 'aliquot_tag': 'ALQ_67ee59a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R1_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+GCAGACACCT_S5_L003_R1_001.fastq.gz 3266690810 FASTQ R1_L003 unaligned CPTAC3 5e058d5d-614b-4f75-bd9b-f9e623f25bb2 0aa4d1a32c688d5bcc404abaf1a449c0 { 'aliquot_tag': 'ALQ_67ee59a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081580013 20210623_WUSTL_TWFU-CPT0081580013-XBn1_1_ATGGCTTGTG+GAATGTTGTG_S3_L003_R2_001.fastq.gz 16324750458 FASTQ R2_L003 unaligned CPTAC3 517b282d-1f91-4d37-999f-1a86d84f466e 3de0b535ea35934be411ce1560cf6108 { 'aliquot_tag': 'ALQ_8dfaf545', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081590013 20210623_WUSTL_TWFU-CPT0081590013-XBn1_1_TTCTCGATGA+TGTCGGGCAC_S4_L003_R2_001.fastq.gz 4782641146 FASTQ R2_L003 unaligned CPTAC3 6ac52a76-b8da-4f73-82e6-985080acafc3 47789ffcf6f9ad3d24374fea0ab7b0b9 { 'aliquot_tag': 'ALQ_b09adcf5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+AGCCCGTAAC_S7_L003_R2_001.fastq.gz 7808630322 FASTQ R2_L003 unaligned CPTAC3 aff0b02f-54c3-477b-b378-b16b561f59b9 7c9001db35aa622bc9073f145fd2cbb5 { 'aliquot_tag': 'ALQ_3b1ecc2a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081600013 20210721_WUSTL_TWFU-CPT0081600013-Y1N1Z1_1Bn1_1_CCTGTCAGGG+GTTACGGGCT_S4_L003_R2_001.fastq.gz 11002906348 FASTQ R2_L003 unaligned CPTAC3 cc04ff73-6900-4928-885c-552cd8b11b7a f86593168fe72dca9765a868dc1a8c81 { 'aliquot_tag': 'ALQ_3b1ecc2a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+AGGTGTCTGC_S7_L003_R2_001.fastq.gz 9553422581 FASTQ R2_L003 unaligned CPTAC3 92e4f7f5-2dd1-4901-ac67-00de1bdb01dc 6c126ccff34770454566b3416fd48b7a { 'aliquot_tag': 'ALQ_67ee59a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00148.scRNA-Seq.R2_L003.T C3N-00148 CCRCC scRNA-Seq tumor CPT0081610013 20210721_WUSTL_TWFU-CPT0081610013-Y1N1Z1_1Bn1_1_CGCTGAAATC+GCAGACACCT_S5_L003_R2_001.fastq.gz 11520663145 FASTQ R2_L003 unaligned CPTAC3 e6457d1b-b66c-4681-8420-6c1bb80e92d9 6741a5271692a91db8769147ecc40dd7 { 'aliquot_tag': 'ALQ_67ee59a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-00148.WGS.A C3N-00148 CCRCC WGS tissue_normal CPT0081620009 CPT0081620009.WholeGenome.RP-1303.bam 53860588095 BAM aligned CPTAC3 5bdf214f-fa22-4a94-94f2-87bf6021505f e81f87af060d1bb9bd72c3497d907bac { 'aliquot_tag': 'ALQ_b8104715', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00148.WGS.A.hg38 C3N-00148 CCRCC WGS tissue_normal CPT0081620009 03f3a930-23ac-4022-a180-7eddf513f3a6_wgs_gdc_realn.bam 78288422049 BAM harmonized CPTAC3 31226045-9a66-42b4-bfef-6e2b3eec8b23 8a0f887ce5c33652a03dba9e2c98b5ca { 'aliquot_tag': 'ALQ_b8104715', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00148.WGS.N C3N-00148 CCRCC WGS blood_normal CPT0081700002 CPT0081700002.WholeGenome.RP-1303.bam 89652895870 BAM aligned CPTAC3 3ca1f926-6bb2-47ba-a820-86a3663e1f76 e34f27ed633e3f654d52d9c1478e5b21 { 'aliquot_tag': 'ALQ_9e5e1e58', 'gdc_sample_type': 'Blood Derived Normal' } @@ -18672,8 +20427,8 @@ C3N-00149.DUP_34e388fd.miRNA-Seq.T C3N-00149 CCRCC miRNA-Seq tumor CPT0084570006 C3N-00149.DUP_34e388fd.miRNA-Seq.T.hg38 C3N-00149 CCRCC miRNA-Seq tumor CPT0084570006 fc7bba3f-2f0c-4018-9151-89102e0a4eea_mirnaseq_gdc_realn.bam 370132285 BAM harmonized CPTAC3 c7641f78-88a8-4e1f-8ae3-0b693deaf8e5 485b219f3614dcd9b7996246c3f482ed { 'aliquot_tag': 'DUP_34e388fd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00149.DUP_34e388fd.RNA-Seq.chimeric.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 ff481170-f549-447f-b970-c84e4fb1efab.rna_seq.chimeric.gdc_realn.bam 109963027 BAM chimeric harmonized CPTAC3 92a4ee01-22a9-4a0c-9946-64e983830079 4fff1bf93efc7a50ea3b87055739a265 { 'aliquot_tag': 'DUP_34e388fd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00149.DUP_34e388fd.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 ff481170-f549-447f-b970-c84e4fb1efab.rna_seq.genomic.gdc_realn.bam 7814489885 BAM genomic harmonized CPTAC3 658d81fb-0482-4ebe-9527-e435b595e440 a5957d05e1fcf22b8de80163bcd959ba { 'aliquot_tag': 'DUP_34e388fd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00149.DUP_34e388fd.RNA-Seq.R1_L005.T C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCGTAGTG-AGACTTGG_S20_L005_R1_001.fastq.gz 3537365441 FASTQ R1_L005 unaligned CPTAC3 a941166b-5b56-45e2-98a7-59ba41c85957 d6e972b9667a9e42eafb4217d701aa22 { 'aliquot_tag': 'DUP_34e388fd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00149.DUP_34e388fd.RNA-Seq.R2_L005.T C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCGTAGTG-AGACTTGG_S20_L005_R2_001.fastq.gz 4166328187 FASTQ R2_L005 unaligned CPTAC3 0e99e57d-7be8-4722-a1ae-215713fd506f 62e5c31066a9e21e98ac3545bfe80dd3 { 'aliquot_tag': 'DUP_34e388fd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00149.DUP_34e388fd.RNA-Seq.R1_L005.T C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCGTAGTG-AGACTTGG_S20_L005_R1_001.fastq.gz 3537365441 FASTQ R1_L005 unaligned CPTAC3 a941166b-5b56-45e2-98a7-59ba41c85957 d6e972b9667a9e42eafb4217d701aa22 { 'aliquot_tag': 'DUP_34e388fd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3N-00149.DUP_34e388fd.RNA-Seq.R2_L005.T C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCGTAGTG-AGACTTGG_S20_L005_R2_001.fastq.gz 4166328187 FASTQ R2_L005 unaligned CPTAC3 0e99e57d-7be8-4722-a1ae-215713fd506f 62e5c31066a9e21e98ac3545bfe80dd3 { 'aliquot_tag': 'DUP_34e388fd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3N-00149.DUP_34e388fd.RNA-Seq.transcriptome.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084570006 ff481170-f549-447f-b970-c84e4fb1efab.rna_seq.transcriptome.gdc_realn.bam 10097879509 BAM transcriptome harmonized CPTAC3 58b067dd-c134-43e0-93cc-c23246f8bab0 606d20275892789effb625e4ba2a1c50 { 'aliquot_tag': 'DUP_34e388fd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00149.DUP_a45c956c.MethArray.Green.T C3N-00149 CCRCC Methylation Array tumor CPT0084570009 204372030076_R03C01_Grn.idat 13677890 IDAT Green NA CPTAC3 0ff762c9-d7a3-47f8-953a-81430771e8f0 c069f60d771e7fe26a53bd988ecf6cb9 { 'aliquot_tag': 'DUP_a45c956c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00149.DUP_a45c956c.MethArray.Red.T C3N-00149 CCRCC Methylation Array tumor CPT0084570009 204372030076_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 c7d35b4c-1e53-4824-ae3c-37e3020b3e33 ac1ecb29b32ce90dc7406d9d0af51a5f { 'aliquot_tag': 'DUP_a45c956c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -18685,8 +20440,8 @@ C3N-00149.DUP_b6b31f2c.miRNA-Seq.T C3N-00149 CCRCC miRNA-Seq tumor CPT0084580006 C3N-00149.DUP_b6b31f2c.miRNA-Seq.T.hg38 C3N-00149 CCRCC miRNA-Seq tumor CPT0084580006 6e5d393b-e8b9-4cc2-9af9-49a8e788f999_mirnaseq_gdc_realn.bam 356038430 BAM harmonized CPTAC3 ea7ee412-e9cc-4cb7-a7dd-063f3123d527 0946dea241955bfed519700cb0893435 { 'aliquot_tag': 'DUP_b6b31f2c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00149.DUP_b6b31f2c.RNA-Seq.chimeric.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 1e9f3a22-9a68-49b1-94c6-4a0ea4d1d341.rna_seq.chimeric.gdc_realn.bam 94514545 BAM chimeric harmonized CPTAC3 34a16e12-056f-4c8d-948f-6873571049db 9e5633c551a4fcc3e6033cb73767d34a { 'aliquot_tag': 'DUP_b6b31f2c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00149.DUP_b6b31f2c.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 1e9f3a22-9a68-49b1-94c6-4a0ea4d1d341.rna_seq.genomic.gdc_realn.bam 7190867923 BAM genomic harmonized CPTAC3 e57f6056-3f91-43d7-928e-92e204e88aa0 b78bdc723a3f79fdbcd2d76d3aee41da { 'aliquot_tag': 'DUP_b6b31f2c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00149.DUP_b6b31f2c.RNA-Seq.R1_L005.T C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTACGACA-GAGTCCAA_S18_L005_R1_001.fastq.gz 3375429210 FASTQ R1_L005 unaligned CPTAC3 2ac76f97-64f6-4a49-9e87-9ec850b6c55e 5d6c45a89c9362b7c2bc0733b3233710 { 'aliquot_tag': 'DUP_b6b31f2c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00149.DUP_b6b31f2c.RNA-Seq.R2_L005.T C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTACGACA-GAGTCCAA_S18_L005_R2_001.fastq.gz 3945741454 FASTQ R2_L005 unaligned CPTAC3 5aee2bb7-8d0c-4980-b9df-40433e73cc3f bfcf7c8f719fba82d6feabcd5b7a29ac { 'aliquot_tag': 'DUP_b6b31f2c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00149.DUP_b6b31f2c.RNA-Seq.R1_L005.T C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTACGACA-GAGTCCAA_S18_L005_R1_001.fastq.gz 3375429210 FASTQ R1_L005 unaligned CPTAC3 2ac76f97-64f6-4a49-9e87-9ec850b6c55e 5d6c45a89c9362b7c2bc0733b3233710 { 'aliquot_tag': 'DUP_b6b31f2c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3N-00149.DUP_b6b31f2c.RNA-Seq.R2_L005.T C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTACGACA-GAGTCCAA_S18_L005_R2_001.fastq.gz 3945741454 FASTQ R2_L005 unaligned CPTAC3 5aee2bb7-8d0c-4980-b9df-40433e73cc3f bfcf7c8f719fba82d6feabcd5b7a29ac { 'aliquot_tag': 'DUP_b6b31f2c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3N-00149.DUP_b6b31f2c.RNA-Seq.transcriptome.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084580006 1e9f3a22-9a68-49b1-94c6-4a0ea4d1d341.rna_seq.transcriptome.gdc_realn.bam 10169109557 BAM transcriptome harmonized CPTAC3 7ced6022-57a1-4a87-a670-d654d311d514 1492d75c3f50caac3d75b54199adc6ee { 'aliquot_tag': 'DUP_b6b31f2c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00149.MethArray.Green.A C3N-00149 CCRCC Methylation Array tissue_normal CPT0084590009 203027390029_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2793cf05-30f8-4d1b-829d-509897c0d575 85e107535ad64b642b89eb144fa8b80d { 'aliquot_tag': 'ALQ_1b6c2b0d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00149.MethArray.Green.T C3N-00149 CCRCC Methylation Array tumor CPT0084560006 202178770079_R04C01_Grn.idat 13676241 IDAT Green NA CPTAC3 80169744-b1d4-4c40-9866-0e729f87393b 4b4b05eb4a7d58b8ef9e43522baeaca0 { 'aliquot_tag': 'ALQ_983a14d', 'gdc_sample_type': 'Primary Tumor' } @@ -18698,20 +20453,20 @@ C3N-00149.miRNA-Seq.T C3N-00149 CCRCC miRNA-Seq tumor CPT0084560009 181113_UNC31 C3N-00149.miRNA-Seq.T.hg38 C3N-00149 CCRCC miRNA-Seq tumor CPT0084560009 f7325567-72f5-4bfd-9092-8d1a694ad776_mirnaseq_gdc_realn.bam 273626726 BAM harmonized CPTAC3 db0418ce-4ae3-452a-9357-cc869c1599a5 095fea1800d388260770fa9b1126c763 { 'aliquot_tag': 'ALQ_993cbcdc', 'gdc_sample_type': 'Primary Tumor' } C3N-00149.RNA-Seq.chimeric.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 078fde6a-08e0-4158-83b3-ee027e64bfd5.rna_seq.chimeric.gdc_realn.bam 54032070 BAM chimeric harmonized CPTAC3 4c9bca31-2d25-4626-a02f-dbf0c8dd2406 67ab61d09741bd68a847596ad9829592 { 'aliquot_tag': 'ALQ_8bd3369c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00149.RNA-Seq.chimeric.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 e7217f0d-398c-41ef-ac67-95d110d56357.rna_seq.chimeric.gdc_realn.bam 40233606 BAM chimeric harmonized CPTAC3 d70c6e68-c49a-4367-acda-9061fcf66de8 c68857fe7e1ee1234fc658bd464dd193 { 'aliquot_tag': 'ALQ_993cbcdc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00149.RNA-Seq.genomic.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 078fde6a-08e0-4158-83b3-ee027e64bfd5.rna_seq.genomic.gdc_realn.bam 5839944203 BAM genomic harmonized CPTAC3 85266ccd-799f-44ec-a73c-b0bacb5a432f 0a59d7b672c72b685b261c0c6e4fbf0c { 'aliquot_tag': 'ALQ_8bd3369c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00149.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 e7217f0d-398c-41ef-ac67-95d110d56357.rna_seq.genomic.gdc_realn.bam 11332026360 BAM genomic harmonized CPTAC3 f06bc7a9-6498-430f-9cb2-e116168bcf62 2967bc8d356bfdd385588fd5f2ba2824 { 'aliquot_tag': 'ALQ_993cbcdc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00149.RNA-Seq.R1_L007.T C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L007_R1_001.fastq.gz 4478859396 FASTQ R1_L007 unaligned CPTAC3 32f8484e-8802-4c31-9950-0c5003ee0a54 cb73225d00c5a819ce838fa57a9c2686 { 'aliquot_tag': 'ALQ_993cbcdc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00149.RNA-Seq.R1_L008.A C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L008_R1_001.fastq.gz 2946131294 FASTQ R1_L008 unaligned CPTAC3 81baf6a5-a453-415f-be76-609893ec38ac b4f84646c4b41cf548282e99561d9c73 { 'aliquot_tag': 'ALQ_8bd3369c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00149.RNA-Seq.R2_L007.T C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L007_R2_001.fastq.gz 5047149306 FASTQ R2_L007 unaligned CPTAC3 2ee5d97a-9a01-41f0-8211-bfd983276c3f 7df1e6f32d2861eb15fe601a0f145f61 { 'aliquot_tag': 'ALQ_993cbcdc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00149.RNA-Seq.R2_L008.A C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L008_R2_001.fastq.gz 3120262615 FASTQ R2_L008 unaligned CPTAC3 40b15200-8776-4170-a2e0-aebec6f52f39 c5d203825a9993416042b12c79b7dab7 { 'aliquot_tag': 'ALQ_8bd3369c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00149.RNA-Seq.genomic.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 078fde6a-08e0-4158-83b3-ee027e64bfd5.rna_seq.genomic.gdc_realn.bam 5839944203 BAM genomic harmonized CPTAC3 7b8f8c25-340e-4331-9d9c-dc7a638ed81f 0a59d7b672c72b685b261c0c6e4fbf0c { 'aliquot_tag': 'ALQ_8bd3369c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00149.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 e7217f0d-398c-41ef-ac67-95d110d56357.rna_seq.genomic.gdc_realn.bam 11332026360 BAM genomic harmonized CPTAC3 0dffe6f5-f453-4dda-b54e-3dd33d8c550b 2967bc8d356bfdd385588fd5f2ba2824 { 'aliquot_tag': 'ALQ_993cbcdc', 'gdc_sample_type': 'Primary Tumor' } +C3N-00149.RNA-Seq.R1_L007.T C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L007_R1_001.fastq.gz 4478859396 FASTQ R1_L007 unaligned CPTAC3 32f8484e-8802-4c31-9950-0c5003ee0a54 cb73225d00c5a819ce838fa57a9c2686 { 'aliquot_tag': 'ALQ_993cbcdc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00149.RNA-Seq.R1_L008.A C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L008_R1_001.fastq.gz 2946131294 FASTQ R1_L008 unaligned CPTAC3 81baf6a5-a453-415f-be76-609893ec38ac b4f84646c4b41cf548282e99561d9c73 { 'aliquot_tag': 'ALQ_8bd3369c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00149.RNA-Seq.R2_L007.T C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L007_R2_001.fastq.gz 5047149306 FASTQ R2_L007 unaligned CPTAC3 2ee5d97a-9a01-41f0-8211-bfd983276c3f 7df1e6f32d2861eb15fe601a0f145f61 { 'aliquot_tag': 'ALQ_993cbcdc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-00149.RNA-Seq.R2_L008.A C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L008_R2_001.fastq.gz 3120262615 FASTQ R2_L008 unaligned CPTAC3 40b15200-8776-4170-a2e0-aebec6f52f39 c5d203825a9993416042b12c79b7dab7 { 'aliquot_tag': 'ALQ_8bd3369c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00149.RNA-Seq.transcriptome.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal CPT0084590006 078fde6a-08e0-4158-83b3-ee027e64bfd5.rna_seq.transcriptome.gdc_realn.bam 7682964490 BAM transcriptome harmonized CPTAC3 544e1bfc-ead9-4c51-af15-ef615435295d 113d4c770ae8f0084bad70632a058b53 { 'aliquot_tag': 'ALQ_8bd3369c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00149.RNA-Seq.transcriptome.T.hg38 C3N-00149 CCRCC RNA-Seq tumor CPT0084560009 e7217f0d-398c-41ef-ac67-95d110d56357.rna_seq.transcriptome.gdc_realn.bam 12492630541 BAM transcriptome harmonized CPTAC3 5336785e-e8a7-476b-930e-38d5143519bb a9abc7ccd634b7da8c200f78aa9f4aab { 'aliquot_tag': 'ALQ_993cbcdc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00149.scRNA-Seq.R1_L001.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 20210721_WUSTL_TWFU-CPT0084570004-Y1N1Z1_1Bn1_1_TGGTTCGGGT+CTCCTGCCAC_S2_L001_R1_001.fastq.gz 5897874286 FASTQ R1_L001 unaligned CPTAC3 b0708658-a00f-4c9a-9409-4c76babfe4d4 53b2ea1dfe2a5df9ae3af2529aabc54c { 'aliquot_tag': 'ALQ_daede9d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00149.scRNA-Seq.R1_L001.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 20210721_WUSTL_TWFU-CPT0084580013-Y1N1Z1_1Bn1_1_CCCAGCTTCT+GTTTGGTGTC_S3_L001_R1_001.fastq.gz 6764990910 FASTQ R1_L001 unaligned CPTAC3 7a89329f-21cf-4a5a-a462-e818c53608c3 e6cc4803d729e5e77bcf8858572261b5 { 'aliquot_tag': 'ALQ_dfc2dae2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00149.scRNA-Seq.R1_L003.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 20210515_WUSTL_TWFU-CPT0084560013-Y1N1Z1_1Bn1_1_GTGGATCAAA+GCCAACCCTG_S2_L003_R1_001.fastq.gz 5393333992 FASTQ R1_L003 unaligned CPTAC3 003d9012-1a02-4cb3-ac51-eec00edf4173 9f779d2ce860f1c718a2aa4beeb7e9f6 { 'aliquot_tag': 'ALQ_60f26483', 'gdc_sample_type': 'Primary Tumor' } -C3N-00149.scRNA-Seq.R2_L001.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 20210721_WUSTL_TWFU-CPT0084570004-Y1N1Z1_1Bn1_1_TGGTTCGGGT+CTCCTGCCAC_S2_L001_R2_001.fastq.gz 20498978988 FASTQ R2_L001 unaligned CPTAC3 87c9c71c-1d8a-4664-b2ae-e59c22529c31 fee2654b3f2700541a387dd079f28af8 { 'aliquot_tag': 'ALQ_daede9d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00149.scRNA-Seq.R2_L001.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 20210721_WUSTL_TWFU-CPT0084580013-Y1N1Z1_1Bn1_1_CCCAGCTTCT+GTTTGGTGTC_S3_L001_R2_001.fastq.gz 23395672432 FASTQ R2_L001 unaligned CPTAC3 1e87f1a6-aad1-4280-b951-9516931886e4 f2ec5117b63202cfd7747f8ff1088ae7 { 'aliquot_tag': 'ALQ_dfc2dae2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00149.scRNA-Seq.R2_L003.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 20210515_WUSTL_TWFU-CPT0084560013-Y1N1Z1_1Bn1_1_GTGGATCAAA+GCCAACCCTG_S2_L003_R2_001.fastq.gz 18493130295 FASTQ R2_L003 unaligned CPTAC3 9a43af8f-0bc6-4248-a079-bd5cffaec59d f3433c19bcde63f5e320a18db6404bcf { 'aliquot_tag': 'ALQ_60f26483', 'gdc_sample_type': 'Primary Tumor' } +C3N-00149.scRNA-Seq.R1_L001.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 20210721_WUSTL_TWFU-CPT0084570004-Y1N1Z1_1Bn1_1_TGGTTCGGGT+CTCCTGCCAC_S2_L001_R1_001.fastq.gz 5897874286 FASTQ R1_L001 unaligned CPTAC3 b0708658-a00f-4c9a-9409-4c76babfe4d4 53b2ea1dfe2a5df9ae3af2529aabc54c { 'aliquot_tag': 'ALQ_daede9d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00149.scRNA-Seq.R1_L001.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 20210721_WUSTL_TWFU-CPT0084580013-Y1N1Z1_1Bn1_1_CCCAGCTTCT+GTTTGGTGTC_S3_L001_R1_001.fastq.gz 6764990910 FASTQ R1_L001 unaligned CPTAC3 7a89329f-21cf-4a5a-a462-e818c53608c3 e6cc4803d729e5e77bcf8858572261b5 { 'aliquot_tag': 'ALQ_dfc2dae2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00149.scRNA-Seq.R1_L003.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 20210515_WUSTL_TWFU-CPT0084560013-Y1N1Z1_1Bn1_1_GTGGATCAAA+GCCAACCCTG_S2_L003_R1_001.fastq.gz 5393333992 FASTQ R1_L003 unaligned CPTAC3 003d9012-1a02-4cb3-ac51-eec00edf4173 9f779d2ce860f1c718a2aa4beeb7e9f6 { 'aliquot_tag': 'ALQ_60f26483', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00149.scRNA-Seq.R2_L001.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084570004 20210721_WUSTL_TWFU-CPT0084570004-Y1N1Z1_1Bn1_1_TGGTTCGGGT+CTCCTGCCAC_S2_L001_R2_001.fastq.gz 20498978988 FASTQ R2_L001 unaligned CPTAC3 87c9c71c-1d8a-4664-b2ae-e59c22529c31 fee2654b3f2700541a387dd079f28af8 { 'aliquot_tag': 'ALQ_daede9d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00149.scRNA-Seq.R2_L001.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084580013 20210721_WUSTL_TWFU-CPT0084580013-Y1N1Z1_1Bn1_1_CCCAGCTTCT+GTTTGGTGTC_S3_L001_R2_001.fastq.gz 23395672432 FASTQ R2_L001 unaligned CPTAC3 1e87f1a6-aad1-4280-b951-9516931886e4 f2ec5117b63202cfd7747f8ff1088ae7 { 'aliquot_tag': 'ALQ_dfc2dae2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00149.scRNA-Seq.R2_L003.T C3N-00149 CCRCC scRNA-Seq tumor CPT0084560013 20210515_WUSTL_TWFU-CPT0084560013-Y1N1Z1_1Bn1_1_GTGGATCAAA+GCCAACCCTG_S2_L003_R2_001.fastq.gz 18493130295 FASTQ R2_L003 unaligned CPTAC3 9a43af8f-0bc6-4248-a079-bd5cffaec59d f3433c19bcde63f5e320a18db6404bcf { 'aliquot_tag': 'ALQ_60f26483', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-00149.WGS.A C3N-00149 CCRCC WGS tissue_normal CPT0084590009 CPT0084590009.WholeGenome.RP-1303.bam 65199872615 BAM aligned CPTAC3 1fdcbfca-3e89-4f14-ad23-ce75a9e988b5 0d0bc062e601b074ea98b77af63d84c2 { 'aliquot_tag': 'ALQ_1b6c2b0d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00149.WGS.A.hg38 C3N-00149 CCRCC WGS tissue_normal CPT0084590009 c1c83894-a954-4e46-a807-5bbfd8b63134_wgs_gdc_realn.bam 95630791325 BAM harmonized CPTAC3 07b25196-257f-4cc6-8e26-03b8bee7bae8 0103ebe2640517b605d7d554852ae431 { 'aliquot_tag': 'ALQ_1b6c2b0d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00149.WGS.N C3N-00149 CCRCC WGS blood_normal CPT0085310002 CPT0085310002.WholeGenome.RP-1303.bam 77407443278 BAM aligned CPTAC3 c5562b54-6f0c-49ec-8792-db4288d2680d a37dfd27fdd195a1ef585537e757eb2f { 'aliquot_tag': 'ALQ_cce051ed', 'gdc_sample_type': 'Blood Derived Normal' } @@ -18728,15 +20483,15 @@ C3N-00150.DUP_27c08b1e.miRNA-Seq.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066510012 C3N-00150.DUP_27c08b1e.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066510012 04668f78-78f9-4f0a-b521-190e1e7f7bad_mirnaseq_gdc_realn.bam 347299794 BAM harmonized CPTAC3 e7003944-a074-40fe-828f-2b1717697072 4995d6cb35b8277a8f09d0adfbfa02b4 { 'aliquot_tag': 'DUP_27c08b1e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_27c08b1e.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 893722aa-8845-48c8-aedc-dbaf831031cb.rna_seq.chimeric.gdc_realn.bam 56120761 BAM chimeric harmonized CPTAC3 ec49241b-8c7d-4c13-a61e-d84e036ff42a 0525e672e62bbcffe0d61c813be08f19 { 'aliquot_tag': 'DUP_27c08b1e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_27c08b1e.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 893722aa-8845-48c8-aedc-dbaf831031cb.rna_seq.genomic.gdc_realn.bam 10589503435 BAM genomic harmonized CPTAC3 1f718e87-0124-4f98-a072-7c4d6fa2b6ad 0b3c9a8a3ca041bc5f695ba020e96dc6 { 'aliquot_tag': 'DUP_27c08b1e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00150.DUP_27c08b1e.RNA-Seq.R1_L001.T C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 200608_UNC31-K00269_0281_AHH5NFBBXY_CGCTATGT-TCCGACAC_S2_L001_R1_001.fastq.gz 4912531183 FASTQ R1_L001 unaligned CPTAC3 f2399c07-4ee4-4777-8edb-88a422f1c979 b366dbd2baf5bf0c3535b586a9c96de2 { 'aliquot_tag': 'DUP_27c08b1e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00150.DUP_27c08b1e.RNA-Seq.R2_L001.T C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 200608_UNC31-K00269_0281_AHH5NFBBXY_CGCTATGT-TCCGACAC_S2_L001_R2_001.fastq.gz 5975142522 FASTQ R2_L001 unaligned CPTAC3 9fb17392-f2d0-4d12-8503-aab183708848 d419f5f4584027e9d3fffbd6af866c02 { 'aliquot_tag': 'DUP_27c08b1e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00150.DUP_27c08b1e.RNA-Seq.R1_L001.T C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 200608_UNC31-K00269_0281_AHH5NFBBXY_CGCTATGT-TCCGACAC_S2_L001_R1_001.fastq.gz 4912531183 FASTQ R1_L001 unaligned CPTAC3 f2399c07-4ee4-4777-8edb-88a422f1c979 b366dbd2baf5bf0c3535b586a9c96de2 { 'aliquot_tag': 'DUP_27c08b1e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3N-00150.DUP_27c08b1e.RNA-Seq.R2_L001.T C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 200608_UNC31-K00269_0281_AHH5NFBBXY_CGCTATGT-TCCGACAC_S2_L001_R2_001.fastq.gz 5975142522 FASTQ R2_L001 unaligned CPTAC3 9fb17392-f2d0-4d12-8503-aab183708848 d419f5f4584027e9d3fffbd6af866c02 { 'aliquot_tag': 'DUP_27c08b1e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3N-00150.DUP_27c08b1e.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066510012 893722aa-8845-48c8-aedc-dbaf831031cb.rna_seq.transcriptome.gdc_realn.bam 14223420129 BAM transcriptome harmonized CPTAC3 93b8dd80-0acf-4bbd-84ee-30f290a01d69 14df7202a828423244066b13baf91600 { 'aliquot_tag': 'DUP_27c08b1e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_4d657f6.miRNA-Seq.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066500006 200526_UNC32-K00270_0248_BHH7WFBBXY_GGCTAC_S43_L005_R1_001.unaln.bam 262975676 BAM unaligned CPTAC3 c71d4bcc-731e-45d1-8bd5-9a66047e9c5a e8789e2699ad3bdcc1aebeff66c5fa11 { 'aliquot_tag': 'DUP_4d657f6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_4d657f6.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066500006 20b5307e-9a13-41e8-943a-52f29a9cefc5_mirnaseq_gdc_realn.bam 297271324 BAM harmonized CPTAC3 28662506-2196-4c57-bd9f-38cee3e4d09f 7814720285895f2a1c8b15bc5597ff7c { 'aliquot_tag': 'DUP_4d657f6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_4d657f6.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 9c87730f-1056-4a2d-91c3-6126d030dfa6.rna_seq.chimeric.gdc_realn.bam 225870739 BAM chimeric harmonized CPTAC3 f3df2ac6-6aa8-4edd-a66d-7c3ac85d22ee b5d8867e54f810b14f5a198c799e2ef5 { 'aliquot_tag': 'DUP_4d657f6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00150.DUP_4d657f6.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 9c87730f-1056-4a2d-91c3-6126d030dfa6.rna_seq.genomic.gdc_realn.bam 8326027817 BAM genomic harmonized CPTAC3 8e256e33-8961-4a22-a4c0-125319965c3d e29dffe7948d3d9f0f531587785c1c2a { 'aliquot_tag': 'DUP_4d657f6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00150.DUP_4d657f6.RNA-Seq.R1_L006.T C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 200518_UNC32-K00270_0247_AHH573BBXY_TCTCTACT-CGCGGTTC_S38_L006_R1_001.fastq.gz 3969540349 FASTQ R1_L006 unaligned CPTAC3 fc944036-cd67-4263-b94e-cec2d6eaa30f 4527f874d076789171da4e5c0d5a390a { 'aliquot_tag': 'DUP_4d657f6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00150.DUP_4d657f6.RNA-Seq.R2_L006.T C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 200518_UNC32-K00270_0247_AHH573BBXY_TCTCTACT-CGCGGTTC_S38_L006_R2_001.fastq.gz 4592438801 FASTQ R2_L006 unaligned CPTAC3 28c45fe7-ca60-4a75-91dc-7132d592c14d 6883db94e572124efc15d2f9cc37390d { 'aliquot_tag': 'DUP_4d657f6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00150.DUP_4d657f6.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 9c87730f-1056-4a2d-91c3-6126d030dfa6.rna_seq.genomic.gdc_realn.bam 8326027817 BAM genomic harmonized CPTAC3 bb4dc287-edd9-4ebf-aef8-7b0568a86464 e29dffe7948d3d9f0f531587785c1c2a { 'aliquot_tag': 'DUP_4d657f6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00150.DUP_4d657f6.RNA-Seq.R1_L006.T C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 200518_UNC32-K00270_0247_AHH573BBXY_TCTCTACT-CGCGGTTC_S38_L006_R1_001.fastq.gz 3969540349 FASTQ R1_L006 unaligned CPTAC3 fc944036-cd67-4263-b94e-cec2d6eaa30f 4527f874d076789171da4e5c0d5a390a { 'aliquot_tag': 'DUP_4d657f6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3N-00150.DUP_4d657f6.RNA-Seq.R2_L006.T C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 200518_UNC32-K00270_0247_AHH573BBXY_TCTCTACT-CGCGGTTC_S38_L006_R2_001.fastq.gz 4592438801 FASTQ R2_L006 unaligned CPTAC3 28c45fe7-ca60-4a75-91dc-7132d592c14d 6883db94e572124efc15d2f9cc37390d { 'aliquot_tag': 'DUP_4d657f6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3N-00150.DUP_4d657f6.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066500006 9c87730f-1056-4a2d-91c3-6126d030dfa6.rna_seq.transcriptome.gdc_realn.bam 10005109528 BAM transcriptome harmonized CPTAC3 f039f3b3-bd29-4721-813c-75312d20fd03 0def36132b3e5a9f7868176894faddc0 { 'aliquot_tag': 'DUP_4d657f6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_5225fbb3.MethArray.Green.T C3N-00150 CCRCC Methylation Array tumor CPT0066490009 204367490056_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 45e98501-5d86-48d1-ab41-e3129c5f6f05 aba405babda0fad2dc65f0860d14b0a6 { 'aliquot_tag': 'DUP_5225fbb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_5225fbb3.MethArray.Red.T C3N-00150 CCRCC Methylation Array tumor CPT0066490009 204367490056_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 85b2fa7a-fed3-4cf6-a57c-2e1e7b02821b de930d19ebc5ecd406e1002dc1870281 { 'aliquot_tag': 'DUP_5225fbb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -18754,8 +20509,8 @@ C3N-00150.DUP_c29ae622.miRNA-Seq.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066490006 C3N-00150.DUP_c29ae622.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066490006 bef625e2-5d1f-4877-bd4a-bcb9fe5eee18_mirnaseq_gdc_realn.bam 414646609 BAM harmonized CPTAC3 d482ffb3-ef70-4e7b-a2b2-421c7d65f4f2 db3a465a404df754a9c727c1c76d93b9 { 'aliquot_tag': 'DUP_c29ae622', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_c29ae622.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 7008408d-a9b6-4e00-8c94-cc7f2a13836b.rna_seq.chimeric.gdc_realn.bam 334977588 BAM chimeric harmonized CPTAC3 55b7e1bf-740d-4cd8-8143-f65d8b29cccd 1a626db83f367fcf60dfab5919001349 { 'aliquot_tag': 'DUP_c29ae622', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_c29ae622.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 7008408d-a9b6-4e00-8c94-cc7f2a13836b.rna_seq.genomic.gdc_realn.bam 10892186888 BAM genomic harmonized CPTAC3 1a3bc034-07b5-4264-8a0f-c1b948eeac2e 07222e4e5d23a3c27ad0fcaba86dfeb6 { 'aliquot_tag': 'DUP_c29ae622', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00150.DUP_c29ae622.RNA-Seq.R1_L006.T C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 200518_UNC32-K00270_0247_AHH573BBXY_GACCTGAA-TTGGTGAG_S37_L006_R1_001.fastq.gz 4987071225 FASTQ R1_L006 unaligned CPTAC3 781182a7-69b1-48db-bdc5-3857e93951b8 e00d51622ef0a39c8de847139d4bc9dc { 'aliquot_tag': 'DUP_c29ae622', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00150.DUP_c29ae622.RNA-Seq.R2_L006.T C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 200518_UNC32-K00270_0247_AHH573BBXY_GACCTGAA-TTGGTGAG_S37_L006_R2_001.fastq.gz 5833583567 FASTQ R2_L006 unaligned CPTAC3 2e50309f-29d7-44cd-a1aa-4bb6118e5d78 6d373b513ed06ae01b0a01a36e309655 { 'aliquot_tag': 'DUP_c29ae622', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00150.DUP_c29ae622.RNA-Seq.R1_L006.T C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 200518_UNC32-K00270_0247_AHH573BBXY_GACCTGAA-TTGGTGAG_S37_L006_R1_001.fastq.gz 4987071225 FASTQ R1_L006 unaligned CPTAC3 781182a7-69b1-48db-bdc5-3857e93951b8 e00d51622ef0a39c8de847139d4bc9dc { 'aliquot_tag': 'DUP_c29ae622', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3N-00150.DUP_c29ae622.RNA-Seq.R2_L006.T C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 200518_UNC32-K00270_0247_AHH573BBXY_GACCTGAA-TTGGTGAG_S37_L006_R2_001.fastq.gz 5833583567 FASTQ R2_L006 unaligned CPTAC3 2e50309f-29d7-44cd-a1aa-4bb6118e5d78 6d373b513ed06ae01b0a01a36e309655 { 'aliquot_tag': 'DUP_c29ae622', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3N-00150.DUP_c29ae622.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066490006 7008408d-a9b6-4e00-8c94-cc7f2a13836b.rna_seq.transcriptome.gdc_realn.bam 14575740355 BAM transcriptome harmonized CPTAC3 e35bf1cc-467a-4ebe-a975-220b988413a6 0cf43735d4e2c3f4aed1cb79a0782cd7 { 'aliquot_tag': 'DUP_c29ae622', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_de0e5341.MethArray.Green.T C3N-00150 CCRCC Methylation Array tumor CPT0066510008 204367490061_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e78b8b17-bfb6-4bdc-ae5b-19b21216e3db b733d906d8fbed7800248ab392cd3610 { 'aliquot_tag': 'DUP_de0e5341', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00150.DUP_de0e5341.MethArray.Red.T C3N-00150 CCRCC Methylation Array tumor CPT0066510008 204367490061_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 3152a092-f7eb-4fd9-a32c-b9b073974a02 eb95d8a113eee55f5b74da4ce906e3df { 'aliquot_tag': 'DUP_de0e5341', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -18773,12 +20528,12 @@ C3N-00150.miRNA-Seq.T C3N-00150 CCRCC miRNA-Seq tumor CPT0066480006 181113_UNC31 C3N-00150.miRNA-Seq.T.hg38 C3N-00150 CCRCC miRNA-Seq tumor CPT0066480006 85ba3a7a-834d-40f0-bda4-1d86dd8710ae_mirnaseq_gdc_realn.bam 222265685 BAM harmonized CPTAC3 4c579db4-55ac-4a70-a0f7-e0cc08f9d18f 94c439a1f42dcd717f89b4923f833b44 { 'aliquot_tag': 'ALQ_fffacf92', 'gdc_sample_type': 'Primary Tumor' } C3N-00150.RNA-Seq.chimeric.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 f8c4e1a9-70f7-4366-857d-14abdbeddcf9.rna_seq.chimeric.gdc_realn.bam 61826855 BAM chimeric harmonized CPTAC3 43c0a6af-99bb-46e7-9536-eba614f1f89f 905537d46cbc92dff17236a14a8eb99b { 'aliquot_tag': 'ALQ_7e160496', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00150.RNA-Seq.chimeric.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 a7acf0c9-541a-4bb8-bbba-40e20f0e955c.rna_seq.chimeric.gdc_realn.bam 20553246 BAM chimeric harmonized CPTAC3 e29b4a30-fb93-4871-bf5e-536866e1bbbd 3c15255b4b21e4533df205d473803722 { 'aliquot_tag': 'ALQ_fffacf92', 'gdc_sample_type': 'Primary Tumor' } -C3N-00150.RNA-Seq.genomic.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 f8c4e1a9-70f7-4366-857d-14abdbeddcf9.rna_seq.genomic.gdc_realn.bam 7546618463 BAM genomic harmonized CPTAC3 1ab33ecf-d4d3-4404-a75d-7a35894b7fc4 4a417e6dcfa38e77424b0cd2828a3684 { 'aliquot_tag': 'ALQ_7e160496', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00150.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 a7acf0c9-541a-4bb8-bbba-40e20f0e955c.rna_seq.genomic.gdc_realn.bam 6642670462 BAM genomic harmonized CPTAC3 a4c40898-5397-45fd-8df6-96ff3aca767e f98f4e4cf4a027340023e62e9c726748 { 'aliquot_tag': 'ALQ_fffacf92', 'gdc_sample_type': 'Primary Tumor' } -C3N-00150.RNA-Seq.R1_L003.T C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATTCCT_S12_L003_R1_001.fastq.gz 3249194491 FASTQ R1_L003 unaligned CPTAC3 150293f5-6224-4de0-a778-9206a16aa41a 63c77863adf613bbd315a4a2769c045d { 'aliquot_tag': 'ALQ_fffacf92', 'gdc_sample_type': 'Primary Tumor' } -C3N-00150.RNA-Seq.R1_L004.A C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 171212_UNC31-K00269_0102_AHN5MMBBXX_CTTGTA_S14_L004_R1_001.fastq.gz 3764973522 FASTQ R1_L004 unaligned CPTAC3 48645880-9721-4027-8168-48b937146d8f 746ce36fc96763a2a11462668928f222 { 'aliquot_tag': 'ALQ_7e160496', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00150.RNA-Seq.R2_L003.T C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATTCCT_S12_L003_R2_001.fastq.gz 3523187235 FASTQ R2_L003 unaligned CPTAC3 dcc3c017-ead2-4264-89f0-6b97c01e4005 d99e7bd9f101002c80be5aa9588db824 { 'aliquot_tag': 'ALQ_fffacf92', 'gdc_sample_type': 'Primary Tumor' } -C3N-00150.RNA-Seq.R2_L004.A C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 171212_UNC31-K00269_0102_AHN5MMBBXX_CTTGTA_S14_L004_R2_001.fastq.gz 4017114783 FASTQ R2_L004 unaligned CPTAC3 d615fdfa-8133-421e-b1e7-fb8fcb83b92a f19d6348379f5fddacccf3edadb98abf { 'aliquot_tag': 'ALQ_7e160496', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00150.RNA-Seq.genomic.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 f8c4e1a9-70f7-4366-857d-14abdbeddcf9.rna_seq.genomic.gdc_realn.bam 7546618463 BAM genomic harmonized CPTAC3 a3d92754-0b98-43f7-8c89-270685a51488 4a417e6dcfa38e77424b0cd2828a3684 { 'aliquot_tag': 'ALQ_7e160496', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00150.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 a7acf0c9-541a-4bb8-bbba-40e20f0e955c.rna_seq.genomic.gdc_realn.bam 6642670462 BAM genomic harmonized CPTAC3 1901d326-11d7-4781-8656-349c6dab259d f98f4e4cf4a027340023e62e9c726748 { 'aliquot_tag': 'ALQ_fffacf92', 'gdc_sample_type': 'Primary Tumor' } +C3N-00150.RNA-Seq.R1_L003.T C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATTCCT_S12_L003_R1_001.fastq.gz 3249194491 FASTQ R1_L003 unaligned CPTAC3 150293f5-6224-4de0-a778-9206a16aa41a 63c77863adf613bbd315a4a2769c045d { 'aliquot_tag': 'ALQ_fffacf92', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00150.RNA-Seq.R1_L004.A C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 171212_UNC31-K00269_0102_AHN5MMBBXX_CTTGTA_S14_L004_R1_001.fastq.gz 3764973522 FASTQ R1_L004 unaligned CPTAC3 48645880-9721-4027-8168-48b937146d8f 746ce36fc96763a2a11462668928f222 { 'aliquot_tag': 'ALQ_7e160496', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-00150.RNA-Seq.R2_L003.T C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATTCCT_S12_L003_R2_001.fastq.gz 3523187235 FASTQ R2_L003 unaligned CPTAC3 dcc3c017-ead2-4264-89f0-6b97c01e4005 d99e7bd9f101002c80be5aa9588db824 { 'aliquot_tag': 'ALQ_fffacf92', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00150.RNA-Seq.R2_L004.A C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 171212_UNC31-K00269_0102_AHN5MMBBXX_CTTGTA_S14_L004_R2_001.fastq.gz 4017114783 FASTQ R2_L004 unaligned CPTAC3 d615fdfa-8133-421e-b1e7-fb8fcb83b92a f19d6348379f5fddacccf3edadb98abf { 'aliquot_tag': 'ALQ_7e160496', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3N-00150.RNA-Seq.transcriptome.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal CPT0066520006 f8c4e1a9-70f7-4366-857d-14abdbeddcf9.rna_seq.transcriptome.gdc_realn.bam 8987991835 BAM transcriptome harmonized CPTAC3 0a4e8d53-f940-42f2-b170-9bf03eb00333 2470d03e9e4e6ab9c2d6665511bb1c7b { 'aliquot_tag': 'ALQ_7e160496', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00150.RNA-Seq.transcriptome.T.hg38 C3N-00150 CCRCC RNA-Seq tumor CPT0066480006 a7acf0c9-541a-4bb8-bbba-40e20f0e955c.rna_seq.transcriptome.gdc_realn.bam 9681514596 BAM transcriptome harmonized CPTAC3 5f873cce-c0fb-49d2-89b7-088458f4b0ee b8c88dfd83bebc39bf685ab383633a17 { 'aliquot_tag': 'ALQ_fffacf92', 'gdc_sample_type': 'Primary Tumor' } C3N-00150.WGS.A C3N-00150 CCRCC WGS tissue_normal CPT0066520009 CPT0066520009.WholeGenome.RP-1303.bam 65063083711 BAM aligned CPTAC3 b5af388d-3f66-489e-93d0-472c28dd4e4d dd9320a2bb3e482f7da22ba3ea6ac645 { 'aliquot_tag': 'ALQ_eea91907', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -18798,12 +20553,15 @@ C3N-00151.MethArray.Red.T C3N-00151 UCEC Methylation Array tumor CPT0066620006 2 C3N-00151.miRNA-Seq.T C3N-00151 UCEC miRNA-Seq tumor CPT0066620009 181012_UNC32-K00270_0124_AH223CBBXY_CACCGG_S3_L008_R1_001.unaln.bam 241179103 BAM unaligned CPTAC3 0915d914-e871-4ed1-9b1b-b2e56de06011 594f56707dab67afcb8c41e62b34a52c { 'aliquot_tag': 'ALQ_683d6ba9', 'gdc_sample_type': 'Primary Tumor' } C3N-00151.miRNA-Seq.T.hg38 C3N-00151 UCEC miRNA-Seq tumor CPT0066620009 dbd51823-d415-4d6c-97eb-abec7b6349ac_mirnaseq_gdc_realn.bam 265027554 BAM harmonized CPTAC3 b97d2cb6-f9ab-48a3-90c2-a3de52bba1d9 7fa9959f3d21d3b67cd7a84884290f3c { 'aliquot_tag': 'ALQ_683d6ba9', 'gdc_sample_type': 'Primary Tumor' } C3N-00151.RNA-Seq.chimeric.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0066620009 a041897e-41b7-4132-b44c-dc658b197c4b.rna_seq.chimeric.gdc_realn.bam 158602802 BAM chimeric harmonized CPTAC3 b8145313-599a-4b70-93e7-80b86c154875 813c26758d554d33e657a72308e7d83d { 'aliquot_tag': 'ALQ_683d6ba9', 'gdc_sample_type': 'Primary Tumor' } -C3N-00151.RNA-Seq.genomic.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0066620009 a041897e-41b7-4132-b44c-dc658b197c4b.rna_seq.genomic.gdc_realn.bam 7512740867 BAM genomic harmonized CPTAC3 bdc91487-ff4d-4b92-81f1-b5d01690cd5a dad910c1704fc84d35217a2f0a562ce5 { 'aliquot_tag': 'ALQ_683d6ba9', 'gdc_sample_type': 'Primary Tumor' } -C3N-00151.RNA-Seq.R1_L008.T C3N-00151 UCEC RNA-Seq tumor CPT0066620009 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L008_R1_001.fastq.gz 3567796408 FASTQ R1_L008 unaligned CPTAC3 325918b9-3905-49ff-b4f6-f76a88e30301 f4f895a1eb8577aeeaeb3a2f8a55a56f { 'aliquot_tag': 'ALQ_683d6ba9', 'gdc_sample_type': 'Primary Tumor' } -C3N-00151.RNA-Seq.R1_.T C3N-00151 UCEC RNA-Seq tumor CPT0364160001 20210714_P1_D12_WB7988_plate1_S48_R1_001.fastq.gz 6446023082 FASTQ R1_ unaligned CPTAC3 b6ce1f72-519b-4d84-9093-38a962e3a884 b8d7fbf9ba4dc8e659636625c977f88a { 'aliquot_tag': 'ALQ_2071580f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00151.RNA-Seq.R2_L008.T C3N-00151 UCEC RNA-Seq tumor CPT0066620009 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L008_R2_001.fastq.gz 3831274575 FASTQ R2_L008 unaligned CPTAC3 31961972-9d79-45d4-a53c-b80875dd8e9a 31eb693c4ba38ee3aa23d419d2884f1f { 'aliquot_tag': 'ALQ_683d6ba9', 'gdc_sample_type': 'Primary Tumor' } -C3N-00151.RNA-Seq.R2_.T C3N-00151 UCEC RNA-Seq tumor CPT0364160001 20210714_P1_D12_WB7988_plate1_S48_R2_001.fastq.gz 6727311491 FASTQ R2_ unaligned CPTAC3 6c2c61fe-b9c9-4ce6-9ecc-4a114c1fa98d ff42e27c72d4994c73557ec99d4d7e54 { 'aliquot_tag': 'ALQ_2071580f', 'gdc_sample_type': 'Primary Tumor' } +C3N-00151.RNA-Seq.chimeric.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0364160001 e8968a79-81e7-47e3-8ec2-f832b9bdda93.rna_seq.chimeric.gdc_realn.bam 224551563 BAM chimeric harmonized CPTAC3 99a19f59-2430-489e-bf07-61d424947fa7 4b9bf38cd44d99e4dec3758ae67f74ad { 'aliquot_tag': 'ALQ_2071580f', 'gdc_sample_type': 'Primary Tumor' } +C3N-00151.RNA-Seq.genomic.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0066620009 a041897e-41b7-4132-b44c-dc658b197c4b.rna_seq.genomic.gdc_realn.bam 7512740867 BAM genomic harmonized CPTAC3 bd5ab632-9bd8-4802-b2b4-54a0a0a19c78 dad910c1704fc84d35217a2f0a562ce5 { 'aliquot_tag': 'ALQ_683d6ba9', 'gdc_sample_type': 'Primary Tumor' } +C3N-00151.RNA-Seq.genomic.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0364160001 e8968a79-81e7-47e3-8ec2-f832b9bdda93.rna_seq.genomic.gdc_realn.bam 10274695873 BAM genomic harmonized CPTAC3 316e7eaa-fbd7-40a5-8dbe-193793d60d4d 9dcbb4563d570e963689f946c2c585ad { 'aliquot_tag': 'ALQ_2071580f', 'gdc_sample_type': 'Primary Tumor' } +C3N-00151.RNA-Seq.R1_L008.T C3N-00151 UCEC RNA-Seq tumor CPT0066620009 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L008_R1_001.fastq.gz 3567796408 FASTQ R1_L008 unaligned CPTAC3 325918b9-3905-49ff-b4f6-f76a88e30301 f4f895a1eb8577aeeaeb3a2f8a55a56f { 'aliquot_tag': 'ALQ_683d6ba9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00151.RNA-Seq.R2_L008.T C3N-00151 UCEC RNA-Seq tumor CPT0066620009 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L008_R2_001.fastq.gz 3831274575 FASTQ R2_L008 unaligned CPTAC3 31961972-9d79-45d4-a53c-b80875dd8e9a 31eb693c4ba38ee3aa23d419d2884f1f { 'aliquot_tag': 'ALQ_683d6ba9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00151.RNA-Seq.T C3N-00151 UCEC RNA-Seq tumor CPT0364160001 20210714_P1_D12_WB7988_plate1_S48_R1_001.fastq.gz 6446023082 FASTQ unaligned CPTAC3 b6ce1f72-519b-4d84-9093-38a962e3a884 b8d7fbf9ba4dc8e659636625c977f88a +C3N-00151.RNA-Seq.T C3N-00151 UCEC RNA-Seq tumor CPT0364160001 20210714_P1_D12_WB7988_plate1_S48_R2_001.fastq.gz 6727311491 FASTQ unaligned CPTAC3 6c2c61fe-b9c9-4ce6-9ecc-4a114c1fa98d ff42e27c72d4994c73557ec99d4d7e54 C3N-00151.RNA-Seq.transcriptome.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0066620009 a041897e-41b7-4132-b44c-dc658b197c4b.rna_seq.transcriptome.gdc_realn.bam 10241342155 BAM transcriptome harmonized CPTAC3 bf4b9710-91a6-4869-9858-e8e9f0a88599 065fcd5f98d7bdc6cd64a581ea7a8d91 { 'aliquot_tag': 'ALQ_683d6ba9', 'gdc_sample_type': 'Primary Tumor' } +C3N-00151.RNA-Seq.transcriptome.T.hg38 C3N-00151 UCEC RNA-Seq tumor CPT0364160001 e8968a79-81e7-47e3-8ec2-f832b9bdda93.rna_seq.transcriptome.gdc_realn.bam 4837486849 BAM transcriptome harmonized CPTAC3 bed824a3-b650-4805-b837-2ce194a77666 d02d8939c476771dc9df93819c868df1 { 'aliquot_tag': 'ALQ_2071580f', 'gdc_sample_type': 'Primary Tumor' } C3N-00151.WGS.N C3N-00151 UCEC WGS blood_normal CPT0071660002 CPT0071660002.WholeGenome.RP-1303.bam 80274701416 BAM aligned CPTAC3 094a6259-09f3-4465-8335-12ee260b40ee 3b9b8454c652b9320db160f1b28440db { 'aliquot_tag': 'ALQ_3622af1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00151.WGS.N.hg38 C3N-00151 UCEC WGS blood_normal CPT0071660002 8252f908-a17d-475a-a94f-88043f2bf9da_gdc_realn.bam 120591713328 BAM harmonized CPTAC3 c8094cb6-306f-499b-861c-54292228468d accf6b2ef597bbf7e3fc28a6a679fa1c { 'aliquot_tag': 'ALQ_3622af1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00151.WGS.T C3N-00151 UCEC WGS tumor CPT0066620006 CPT0066620006.WholeGenome.RP-1303.bam 72344722974 BAM aligned CPTAC3 e6d5f29d-5ff0-40d9-9ef0-ca925ad2f7f2 c59b66e0c1ba660d184692511903c26a { 'aliquot_tag': 'ALQ_f8827638', 'gdc_sample_type': 'Primary Tumor' } @@ -18817,9 +20575,9 @@ C3N-00154.MethArray.Red.T C3N-00154 CCRCC Methylation Array tumor CPT0081880006 C3N-00154.miRNA-Seq.T C3N-00154 CCRCC miRNA-Seq tumor CPT0081880009 181113_UNC31-K00269_0164_AH23NNBBXY_TACAGC_S19_L003_R1_001.unaln.bam 228566245 BAM unaligned CPTAC3 12e4b7d8-88a0-422a-80f7-55be66d20ba1 dcc54c6eecdff1088f2c3c849c2ffd18 { 'aliquot_tag': 'ALQ_c8aa3ec4', 'gdc_sample_type': 'Primary Tumor' } C3N-00154.miRNA-Seq.T.hg38 C3N-00154 CCRCC miRNA-Seq tumor CPT0081880009 8a3f963a-7409-4b08-ac27-23983fc4566b_mirnaseq_gdc_realn.bam 251573861 BAM harmonized CPTAC3 26370490-ad6b-4efd-afd9-1206189eb91c 628a16e4f5056eaeefb02bcc49d03954 { 'aliquot_tag': 'ALQ_c8aa3ec4', 'gdc_sample_type': 'Primary Tumor' } C3N-00154.RNA-Seq.chimeric.T.hg38 C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 fb9f067a-82fb-4d44-a888-ccbff71d329b.rna_seq.chimeric.gdc_realn.bam 47162401 BAM chimeric harmonized CPTAC3 8432e478-3d8a-496f-9a36-54bbf47ae4f0 7c77364922c073792c51e5c863b7a923 { 'aliquot_tag': 'ALQ_c8aa3ec4', 'gdc_sample_type': 'Primary Tumor' } -C3N-00154.RNA-Seq.genomic.T.hg38 C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 fb9f067a-82fb-4d44-a888-ccbff71d329b.rna_seq.genomic.gdc_realn.bam 7721721613 BAM genomic harmonized CPTAC3 81bb983d-500b-4be6-aec2-229f3221061b a10fcb6287099df695f21fb5cb192cfb { 'aliquot_tag': 'ALQ_c8aa3ec4', 'gdc_sample_type': 'Primary Tumor' } -C3N-00154.RNA-Seq.R1_L008.T C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L008_R1_001.fastq.gz 3783739243 FASTQ R1_L008 unaligned CPTAC3 735f980d-a3b0-4b7c-8195-0c43938f77f4 1354384458cffd7954e98b6696c9491b { 'aliquot_tag': 'ALQ_c8aa3ec4', 'gdc_sample_type': 'Primary Tumor' } -C3N-00154.RNA-Seq.R2_L008.T C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L008_R2_001.fastq.gz 4186139953 FASTQ R2_L008 unaligned CPTAC3 77b08e1a-d099-477c-afac-d3ca195a37d5 cbb01d143bc0bb008796a565a9d7f81d { 'aliquot_tag': 'ALQ_c8aa3ec4', 'gdc_sample_type': 'Primary Tumor' } +C3N-00154.RNA-Seq.genomic.T.hg38 C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 fb9f067a-82fb-4d44-a888-ccbff71d329b.rna_seq.genomic.gdc_realn.bam 7721721613 BAM genomic harmonized CPTAC3 a26a30b2-ae33-49ce-a4e8-12013f3a51fa a10fcb6287099df695f21fb5cb192cfb { 'aliquot_tag': 'ALQ_c8aa3ec4', 'gdc_sample_type': 'Primary Tumor' } +C3N-00154.RNA-Seq.R1_L008.T C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L008_R1_001.fastq.gz 3783739243 FASTQ R1_L008 unaligned CPTAC3 735f980d-a3b0-4b7c-8195-0c43938f77f4 1354384458cffd7954e98b6696c9491b { 'aliquot_tag': 'ALQ_c8aa3ec4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00154.RNA-Seq.R2_L008.T C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 170908_UNC31-K00269_0080_BHLJ52BBXX_CAGATC_S8_L008_R2_001.fastq.gz 4186139953 FASTQ R2_L008 unaligned CPTAC3 77b08e1a-d099-477c-afac-d3ca195a37d5 cbb01d143bc0bb008796a565a9d7f81d { 'aliquot_tag': 'ALQ_c8aa3ec4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00154.RNA-Seq.transcriptome.T.hg38 C3N-00154 CCRCC RNA-Seq tumor CPT0081880009 fb9f067a-82fb-4d44-a888-ccbff71d329b.rna_seq.transcriptome.gdc_realn.bam 9764868696 BAM transcriptome harmonized CPTAC3 8115c4a0-1845-4ff5-b78e-db1df248b7ff 8ec01000396c35649c149a2230eecf5f { 'aliquot_tag': 'ALQ_c8aa3ec4', 'gdc_sample_type': 'Primary Tumor' } C3N-00154.WGS.N C3N-00154 CCRCC WGS blood_normal CPT0085300002 CPT0085300002.WholeGenome.RP-1303.bam 74857063493 BAM aligned CPTAC3 2be58af0-dad5-4eb1-9f46-f249dcf44bfd 7ceb668d4dbfebce16fd9540185cdb68 { 'aliquot_tag': 'ALQ_f180785d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00154.WGS.N.hg38 C3N-00154 CCRCC WGS blood_normal CPT0085300002 2c47a5c2-8f05-4cb1-bc7f-48844c3f0bf4_gdc_realn.bam 115809831209 BAM harmonized CPTAC3 b056990b-61e7-4dda-9f37-77710d888d5f 610fe9220ef0cc73c946e00b0489ac98 { 'aliquot_tag': 'ALQ_f180785d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -18833,13 +20591,16 @@ C3N-00155.MethArray.Green.T C3N-00155 UCEC Methylation Array tumor CPT0104820009 C3N-00155.MethArray.Red.T C3N-00155 UCEC Methylation Array tumor CPT0104820009 203219650156_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 072b7d1f-e240-4ad0-bce3-c1ac38662282 9ec9abedb196fb87a2d98063e2c302c1 { 'aliquot_tag': 'ALQ_14bc0634', 'gdc_sample_type': 'Primary Tumor' } C3N-00155.miRNA-Seq.T C3N-00155 UCEC miRNA-Seq tumor CPT0104820006 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGTCA_S15_L002_R1_001.unaln.bam 244932224 BAM unaligned CPTAC3 651d6e61-1dce-47a0-9b9a-f5b2474101af dcb20b9a1241e0b1f29f8fae9d356d6e { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor' } C3N-00155.miRNA-Seq.T.hg38 C3N-00155 UCEC miRNA-Seq tumor CPT0104820006 e0d66cb0-c254-4b50-8a8e-600a97eb22de_mirnaseq_gdc_realn.bam 258528809 BAM harmonized CPTAC3 f0fa7ab9-0f87-4f3b-9007-1e43ce1c6f0e 59e27c949b8f86323b47d5c8803b20ba { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00155.RNA-Seq.chimeric.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 0846771b-a909-4638-87c3-b1c55f604c1a.rna_seq.chimeric.gdc_realn.bam 38877278 BAM chimeric harmonized CPTAC3 2fa91c00-4299-45c2-8c40-2ccdfca08163 45a475ee3e23ad1079e5dbbf180f2125 { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00155.RNA-Seq.genomic.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 0846771b-a909-4638-87c3-b1c55f604c1a.rna_seq.genomic.gdc_realn.bam 11278207143 BAM genomic harmonized CPTAC3 f55b8ab1-eec0-49f3-b687-c3d8bb3447fa 3b61c8a5dbddd1d97f3dcfd233b9d48a { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00155.RNA-Seq.R1_L007.T C3N-00155 UCEC RNA-Seq tumor CPT0104820006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L007_R1_001.fastq.gz 4605942366 FASTQ R1_L007 unaligned CPTAC3 1dbf7251-4460-46d3-86a7-a0ef00384fbc bcd8866cddb7bb5b0de65629e727df5e { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00155.RNA-Seq.R1_.T C3N-00155 UCEC RNA-Seq tumor CPT0364230001 20210714_P1_E10_WB7988_plate1_S58_R1_001.fastq.gz 6589081593 FASTQ R1_ unaligned CPTAC3 b8cd98a4-d8a7-49db-a6ab-24da361708ec ddea4cb632feee25e24853e21006a172 { 'aliquot_tag': 'ALQ_6e05a5d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00155.RNA-Seq.R2_L007.T C3N-00155 UCEC RNA-Seq tumor CPT0104820006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L007_R2_001.fastq.gz 5038825391 FASTQ R2_L007 unaligned CPTAC3 681382d7-ca49-4599-8133-72cbecbea0fb 8ec5df7442f24f55c9c684c192b8c58d { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00155.RNA-Seq.R2_.T C3N-00155 UCEC RNA-Seq tumor CPT0364230001 20210714_P1_E10_WB7988_plate1_S58_R2_001.fastq.gz 6949036526 FASTQ R2_ unaligned CPTAC3 2a5791b3-9ca2-4146-a240-795f61628d14 f92f4a4884ae17f79712c4d2fb7d887f { 'aliquot_tag': 'ALQ_6e05a5d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00155.RNA-Seq.transcriptome.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 0846771b-a909-4638-87c3-b1c55f604c1a.rna_seq.transcriptome.gdc_realn.bam 10705031651 BAM transcriptome harmonized CPTAC3 4b9d1029-8d69-435e-bde1-53459a09d707 09ed8e362f0fd3daadbf612650dc8c78 { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00155.RNA-Seq.chimeric.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 03a4c0f8-751c-419f-ba1b-976b72863a44.rna_seq.chimeric.gdc_realn.bam 38860278 BAM chimeric harmonized CPTAC3 69c37b8a-2e8e-4940-a4f9-06b155bedc82 e92bd1417449c7eab99e64add54012e6 { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00155.RNA-Seq.chimeric.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0364230001 de80c653-51f7-4f16-ae45-ce457e25e0ae.rna_seq.chimeric.gdc_realn.bam 180949342 BAM chimeric harmonized CPTAC3 b21d3b9e-302a-4ca3-9771-2d771c569ca6 879b912f5224908a16dae9a35c69b239 { 'aliquot_tag': 'ALQ_6e05a5d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00155.RNA-Seq.genomic.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 03a4c0f8-751c-419f-ba1b-976b72863a44.rna_seq.genomic.gdc_realn.bam 11280233141 BAM genomic harmonized CPTAC3 73b146dd-c0dd-4762-892d-3f20276b9ae9 082e1c997568e976c467d2ee56e400fe { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00155.RNA-Seq.genomic.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0364230001 de80c653-51f7-4f16-ae45-ce457e25e0ae.rna_seq.genomic.gdc_realn.bam 10243535021 BAM genomic harmonized CPTAC3 4720351e-b6dd-48db-9e65-a13aa328601d 30e1b77b155670e6f610d84a32d2ac3e { 'aliquot_tag': 'ALQ_6e05a5d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00155.RNA-Seq.R1_L007.T C3N-00155 UCEC RNA-Seq tumor CPT0104820006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L007_R1_001.fastq.gz 4605942366 FASTQ R1_L007 unaligned CPTAC3 1dbf7251-4460-46d3-86a7-a0ef00384fbc bcd8866cddb7bb5b0de65629e727df5e { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00155.RNA-Seq.R2_L007.T C3N-00155 UCEC RNA-Seq tumor CPT0104820006 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L007_R2_001.fastq.gz 5038825391 FASTQ R2_L007 unaligned CPTAC3 681382d7-ca49-4599-8133-72cbecbea0fb 8ec5df7442f24f55c9c684c192b8c58d { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-00155.RNA-Seq.T C3N-00155 UCEC RNA-Seq tumor CPT0364230001 20210714_P1_E10_WB7988_plate1_S58_R1_001.fastq.gz 6589081593 FASTQ unaligned CPTAC3 b8cd98a4-d8a7-49db-a6ab-24da361708ec ddea4cb632feee25e24853e21006a172 +C3N-00155.RNA-Seq.T C3N-00155 UCEC RNA-Seq tumor CPT0364230001 20210714_P1_E10_WB7988_plate1_S58_R2_001.fastq.gz 6949036526 FASTQ unaligned CPTAC3 2a5791b3-9ca2-4146-a240-795f61628d14 f92f4a4884ae17f79712c4d2fb7d887f +C3N-00155.RNA-Seq.transcriptome.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0104820006 03a4c0f8-751c-419f-ba1b-976b72863a44.rna_seq.transcriptome.gdc_realn.bam 12186096862 BAM transcriptome harmonized CPTAC3 6b20254d-dfb5-4a88-877a-d829aea26b68 8e1c5af3d562caa3511509e6bae2fffa { 'aliquot_tag': 'ALQ_84031ba5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00155.RNA-Seq.transcriptome.T.hg38 C3N-00155 UCEC RNA-Seq tumor CPT0364230001 de80c653-51f7-4f16-ae45-ce457e25e0ae.rna_seq.transcriptome.gdc_realn.bam 6391189596 BAM transcriptome harmonized CPTAC3 6d6b0760-00d8-4b8a-9213-a47ebbc0d165 e6c1150cff9290286bf492b12c79b6bc { 'aliquot_tag': 'ALQ_6e05a5d1', 'gdc_sample_type': 'Primary Tumor' } C3N-00155.WGS.N C3N-00155 UCEC WGS blood_normal CPT0110000002 CPT0110000002.WholeGenome.RP-1303.bam 78905328586 BAM aligned CPTAC3 1cfd640e-1232-4c0c-9bd5-417f2087928a 322c608d74c0fc59834ef59d0d21196e { 'aliquot_tag': 'ALQ_2d182a3c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00155.WGS.N.hg38 C3N-00155 UCEC WGS blood_normal CPT0110000002 5adced66-9cb2-4fb3-a62d-73088f173b03_wgs_gdc_realn.bam 114631627440 BAM harmonized CPTAC3 fb1b4a51-f44c-47a6-91c7-b93bfc6dbed7 fcd54af5918fcea2eb8f171646768727 { 'aliquot_tag': 'ALQ_2d182a3c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00155.WGS.T C3N-00155 UCEC WGS tumor CPT0104820009 CPT0104820009.WholeGenome.RP-1303.bam 69673143095 BAM aligned CPTAC3 7ca532ed-d51f-4376-b967-7ac23ab3053c 80ad4b707ea71b374c4741f3426ba23e { 'aliquot_tag': 'ALQ_14bc0634', 'gdc_sample_type': 'Primary Tumor' } @@ -18858,12 +20619,12 @@ C3N-00167.miRNA-Seq.T C3N-00167 LUAD miRNA-Seq tumor CPT0013600013 180924_UNC31- C3N-00167.miRNA-Seq.T.hg38 C3N-00167 LUAD miRNA-Seq tumor CPT0013600013 6633fcc0-6e1a-4f65-9eff-f28a9cb55206_mirnaseq_gdc_realn.bam 288701211 BAM harmonized CPTAC3 4e199933-c2dc-4a86-adda-ebb4654b4e66 7da8ff6fcaa03e7a012cb0e90cb6f38f { 'aliquot_tag': 'ALQ_b3cec628', 'gdc_sample_type': 'Primary Tumor' } C3N-00167.RNA-Seq.chimeric.A.hg38 C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 fa44a5ba-3cf9-4bc0-b816-dc787f75b869.rna_seq.chimeric.gdc_realn.bam 45086193 BAM chimeric harmonized CPTAC3 6917632a-0743-4689-b7ba-5e2ed79448b2 e104a69d8a46806c55f817081f3ae84a { 'aliquot_tag': 'ALQ_9d1f7936', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00167.RNA-Seq.chimeric.T.hg38 C3N-00167 LUAD RNA-Seq tumor CPT0013600013 5c5e9659-5010-4acf-b5a5-bb184bc495bc.rna_seq.chimeric.gdc_realn.bam 90845803 BAM chimeric harmonized CPTAC3 327cb3b7-1b74-40e1-94e1-76c7fac119bc 30d5a211c8e61dec415d22dfd348bd9b { 'aliquot_tag': 'ALQ_b3cec628', 'gdc_sample_type': 'Primary Tumor' } -C3N-00167.RNA-Seq.genomic.A.hg38 C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 fa44a5ba-3cf9-4bc0-b816-dc787f75b869.rna_seq.genomic.gdc_realn.bam 6212015443 BAM genomic harmonized CPTAC3 0db5d96b-a4b6-4e43-953c-afcace659dac 6105bc2216d49437f8dfa0955c986a7b { 'aliquot_tag': 'ALQ_9d1f7936', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00167.RNA-Seq.genomic.T.hg38 C3N-00167 LUAD RNA-Seq tumor CPT0013600013 5c5e9659-5010-4acf-b5a5-bb184bc495bc.rna_seq.genomic.gdc_realn.bam 9314829295 BAM genomic harmonized CPTAC3 bcfffd52-6b10-483d-9138-f88ac5272093 12098c272219221f67fe25173f022df6 { 'aliquot_tag': 'ALQ_b3cec628', 'gdc_sample_type': 'Primary Tumor' } -C3N-00167.RNA-Seq.R1_L002.T C3N-00167 LUAD RNA-Seq tumor CPT0013600013 170823_UNC31-K00269_0076_BHLCTFBBXX_CGATGT_S5_L002_R1_001.fastq.gz 4447593619 FASTQ R1_L002 unaligned CPTAC3 854da3b4-9736-461f-96b4-8ea145823fdd ad5498beec00b5cc4a86f8eacebe61f8 { 'aliquot_tag': 'ALQ_b3cec628', 'gdc_sample_type': 'Primary Tumor' } -C3N-00167.RNA-Seq.R1_L006.A C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3116067115 FASTQ R1_L006 unaligned CPTAC3 11ffea46-3e8b-4773-ba4b-beba73c1be38 51c08c11eeeb47bf1a79cf0e663527ff { 'aliquot_tag': 'ALQ_9d1f7936', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00167.RNA-Seq.R2_L002.T C3N-00167 LUAD RNA-Seq tumor CPT0013600013 170823_UNC31-K00269_0076_BHLCTFBBXX_CGATGT_S5_L002_R2_001.fastq.gz 4866437509 FASTQ R2_L002 unaligned CPTAC3 bdaf1927-26a6-4947-bdad-0956e610efc0 9c21643a2abd2f5e114602d5c5f3b29e { 'aliquot_tag': 'ALQ_b3cec628', 'gdc_sample_type': 'Primary Tumor' } -C3N-00167.RNA-Seq.R2_L006.A C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTCAA_S21_L006_R2_001.fastq.gz 3270939252 FASTQ R2_L006 unaligned CPTAC3 dfdd2418-6b07-4c78-8ee3-6ec5f3e8256d a43d422b523699efa1baff1cb940fcd7 { 'aliquot_tag': 'ALQ_9d1f7936', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00167.RNA-Seq.genomic.A.hg38 C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 fa44a5ba-3cf9-4bc0-b816-dc787f75b869.rna_seq.genomic.gdc_realn.bam 6212015443 BAM genomic harmonized CPTAC3 30da56f2-0dbf-446f-ac67-81d718be706b 6105bc2216d49437f8dfa0955c986a7b { 'aliquot_tag': 'ALQ_9d1f7936', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00167.RNA-Seq.genomic.T.hg38 C3N-00167 LUAD RNA-Seq tumor CPT0013600013 5c5e9659-5010-4acf-b5a5-bb184bc495bc.rna_seq.genomic.gdc_realn.bam 9314829295 BAM genomic harmonized CPTAC3 907c6a0e-5bd2-4a0b-99f8-1cff51d2c63b 12098c272219221f67fe25173f022df6 { 'aliquot_tag': 'ALQ_b3cec628', 'gdc_sample_type': 'Primary Tumor' } +C3N-00167.RNA-Seq.R1_L002.T C3N-00167 LUAD RNA-Seq tumor CPT0013600013 170823_UNC31-K00269_0076_BHLCTFBBXX_CGATGT_S5_L002_R1_001.fastq.gz 4447593619 FASTQ R1_L002 unaligned CPTAC3 854da3b4-9736-461f-96b4-8ea145823fdd ad5498beec00b5cc4a86f8eacebe61f8 { 'aliquot_tag': 'ALQ_b3cec628', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00167.RNA-Seq.R1_L006.A C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3116067115 FASTQ R1_L006 unaligned CPTAC3 11ffea46-3e8b-4773-ba4b-beba73c1be38 51c08c11eeeb47bf1a79cf0e663527ff { 'aliquot_tag': 'ALQ_9d1f7936', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00167.RNA-Seq.R2_L002.T C3N-00167 LUAD RNA-Seq tumor CPT0013600013 170823_UNC31-K00269_0076_BHLCTFBBXX_CGATGT_S5_L002_R2_001.fastq.gz 4866437509 FASTQ R2_L002 unaligned CPTAC3 bdaf1927-26a6-4947-bdad-0956e610efc0 9c21643a2abd2f5e114602d5c5f3b29e { 'aliquot_tag': 'ALQ_b3cec628', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-00167.RNA-Seq.R2_L006.A C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTCAA_S21_L006_R2_001.fastq.gz 3270939252 FASTQ R2_L006 unaligned CPTAC3 dfdd2418-6b07-4c78-8ee3-6ec5f3e8256d a43d422b523699efa1baff1cb940fcd7 { 'aliquot_tag': 'ALQ_9d1f7936', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-00167.RNA-Seq.transcriptome.A.hg38 C3N-00167 LUAD RNA-Seq tissue_normal CPT0013630006 fa44a5ba-3cf9-4bc0-b816-dc787f75b869.rna_seq.transcriptome.gdc_realn.bam 8031524496 BAM transcriptome harmonized CPTAC3 025dfd13-ca7d-4333-88d2-a69b64449ac0 fb9156dca498701c9874255cde72afcf { 'aliquot_tag': 'ALQ_9d1f7936', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00167.RNA-Seq.transcriptome.T.hg38 C3N-00167 LUAD RNA-Seq tumor CPT0013600013 5c5e9659-5010-4acf-b5a5-bb184bc495bc.rna_seq.transcriptome.gdc_realn.bam 12106737584 BAM transcriptome harmonized CPTAC3 3fb411e5-c72d-40dd-835b-447ecf0db76d 919ac1e6b66d83fb33b566a92cfd39be { 'aliquot_tag': 'ALQ_b3cec628', 'gdc_sample_type': 'Primary Tumor' } C3N-00167.WGS.A C3N-00167 LUAD WGS tissue_normal CPT0013630009 CPT0013630009.WholeGenome.RP-1303.bam 72951085323 BAM aligned CPTAC3 c68eed39-e790-4e29-b15c-489a3412610f 5d37818886e44b2d5e9755757d24fab0 { 'aliquot_tag': 'ALQ_da064a7', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -18899,23 +20660,23 @@ C3N-00168.DUP_2f56b82d.WXS.T.hg38 C3N-00168 CCRCC WXS tumor CPT0019980009 e08784 C3N-00168.DUP_8ee1d435.miRNA-Seq.T C3N-00168 CCRCC miRNA-Seq tumor CPT0020010006 200526_UNC32-K00270_0248_BHH7WFBBXY_GGCTAC_S43_L003_R1_001.unaln.bam 282708142 BAM unaligned CPTAC3 011ccbdd-2a34-4132-b53a-169196fd4cb1 b6377e2e5e584fcdce8960a6d8e17abc { 'aliquot_tag': 'DUP_8ee1d435', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00168.DUP_8ee1d435.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0020010006 bc226434-ead5-400c-b2e0-9eb8abc916f6_mirnaseq_gdc_realn.bam 310367822 BAM harmonized CPTAC3 ec5dd6b3-7596-4db8-abcf-72860bb253dd 834883923baf5eb94bd660c1b8ae6512 { 'aliquot_tag': 'DUP_8ee1d435', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00168.DUP_8ee1d435.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 5a72beac-2c96-4f9b-b85a-a95ee2c667df.rna_seq.chimeric.gdc_realn.bam 44174145 BAM chimeric harmonized CPTAC3 5297af3b-15a6-4231-8df2-d1eac0a02d8e 986cb8227d47b9b727c6cd2f1a1b7bb4 { 'aliquot_tag': 'DUP_8ee1d435', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00168.DUP_8ee1d435.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 5a72beac-2c96-4f9b-b85a-a95ee2c667df.rna_seq.genomic.gdc_realn.bam 7378479910 BAM genomic harmonized CPTAC3 8d69084d-196b-47d5-965e-d1e07fc4a425 7ca629ca1c54deb5c976c2e19df8e2a5 { 'aliquot_tag': 'DUP_8ee1d435', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00168.DUP_8ee1d435.RNA-Seq.R1_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 200519_UNC31-K00269_0280_BHHKGNBBXY_GATCTATC-ATGAGGCT_S7_L002_R1_001.fastq.gz 3513323682 FASTQ R1_L002 unaligned CPTAC3 06b7bc41-372f-4272-974c-3403b43fcc72 a346a8af6469ec7c9ebb8777930c9a56 { 'aliquot_tag': 'DUP_8ee1d435', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00168.DUP_8ee1d435.RNA-Seq.R2_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 200519_UNC31-K00269_0280_BHHKGNBBXY_GATCTATC-ATGAGGCT_S7_L002_R2_001.fastq.gz 3996998381 FASTQ R2_L002 unaligned CPTAC3 15f273ef-9b19-4757-890a-0372f73b4163 f649e238222ccf5cb12d05b11aa146aa { 'aliquot_tag': 'DUP_8ee1d435', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00168.DUP_8ee1d435.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 5a72beac-2c96-4f9b-b85a-a95ee2c667df.rna_seq.genomic.gdc_realn.bam 7378479910 BAM genomic harmonized CPTAC3 2df110df-2fe6-4f56-b5b4-d5bce51002fc 7ca629ca1c54deb5c976c2e19df8e2a5 { 'aliquot_tag': 'DUP_8ee1d435', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00168.DUP_8ee1d435.RNA-Seq.R1_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 200519_UNC31-K00269_0280_BHHKGNBBXY_GATCTATC-ATGAGGCT_S7_L002_R1_001.fastq.gz 3513323682 FASTQ R1_L002 unaligned CPTAC3 06b7bc41-372f-4272-974c-3403b43fcc72 a346a8af6469ec7c9ebb8777930c9a56 { 'aliquot_tag': 'DUP_8ee1d435', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3N-00168.DUP_8ee1d435.RNA-Seq.R2_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 200519_UNC31-K00269_0280_BHHKGNBBXY_GATCTATC-ATGAGGCT_S7_L002_R2_001.fastq.gz 3996998381 FASTQ R2_L002 unaligned CPTAC3 15f273ef-9b19-4757-890a-0372f73b4163 f649e238222ccf5cb12d05b11aa146aa { 'aliquot_tag': 'DUP_8ee1d435', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3N-00168.DUP_8ee1d435.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020010006 5a72beac-2c96-4f9b-b85a-a95ee2c667df.rna_seq.transcriptome.gdc_realn.bam 10219606522 BAM transcriptome harmonized CPTAC3 e7162f6f-c95c-4069-9667-fea20a2d81d8 f21772ae814a8aa56ec62aa33d191149 { 'aliquot_tag': 'DUP_8ee1d435', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00168.DUP_b381fd85.miRNA-Seq.T C3N-00168 CCRCC miRNA-Seq tumor CPT0020000006 200526_UNC32-K00270_0248_BHH7WFBBXY_TAGCTT_S44_L003_R1_001.unaln.bam 357275569 BAM unaligned CPTAC3 9003572f-a41c-47ab-bb5c-64474a1e2e62 e5f7fe3982df5bf18c2d0746cde39337 { 'aliquot_tag': 'DUP_b381fd85', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00168.DUP_b381fd85.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0020000006 0deabf08-73e3-4453-afc3-b960957b8663_mirnaseq_gdc_realn.bam 387053954 BAM harmonized CPTAC3 9b580cba-9a49-45ff-bb4d-f6c5c5cb7ed0 97d5185b6ae63c10a1230771467cd3db { 'aliquot_tag': 'DUP_b381fd85', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00168.DUP_b381fd85.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 07f4eaf3-04df-4863-bd92-56ba9dcb71df.rna_seq.chimeric.gdc_realn.bam 32423502 BAM chimeric harmonized CPTAC3 7159f751-960c-4c70-b19f-2d415c6c4f23 a0747d91a42a209d0bc87c53224d0e51 { 'aliquot_tag': 'DUP_b381fd85', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00168.DUP_b381fd85.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 07f4eaf3-04df-4863-bd92-56ba9dcb71df.rna_seq.genomic.gdc_realn.bam 7755857380 BAM genomic harmonized CPTAC3 5f2e010c-13e5-4283-983e-98aa63a2cce9 0c2adaa72f6c349db9430038c55b89b9 { 'aliquot_tag': 'DUP_b381fd85', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00168.DUP_b381fd85.RNA-Seq.R1_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 200519_UNC31-K00269_0280_BHHKGNBBXY_CATAATAC-TTCTAACG_S6_L002_R1_001.fastq.gz 3629532073 FASTQ R1_L002 unaligned CPTAC3 e97e9e36-b700-4168-af27-f3499251270f 075202d565de03aa52de56aa2e1bb2aa { 'aliquot_tag': 'DUP_b381fd85', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00168.DUP_b381fd85.RNA-Seq.R2_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 200519_UNC31-K00269_0280_BHHKGNBBXY_CATAATAC-TTCTAACG_S6_L002_R2_001.fastq.gz 4211308110 FASTQ R2_L002 unaligned CPTAC3 15de8ab5-f8ea-483c-9ce1-0bde72a71a7a 7e19d1af8b162b458a3a22073153d8e2 { 'aliquot_tag': 'DUP_b381fd85', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00168.DUP_b381fd85.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 07f4eaf3-04df-4863-bd92-56ba9dcb71df.rna_seq.genomic.gdc_realn.bam 7755857380 BAM genomic harmonized CPTAC3 6d712c5c-3a41-4aa3-9fd4-4975fc4634a7 0c2adaa72f6c349db9430038c55b89b9 { 'aliquot_tag': 'DUP_b381fd85', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00168.DUP_b381fd85.RNA-Seq.R1_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 200519_UNC31-K00269_0280_BHHKGNBBXY_CATAATAC-TTCTAACG_S6_L002_R1_001.fastq.gz 3629532073 FASTQ R1_L002 unaligned CPTAC3 e97e9e36-b700-4168-af27-f3499251270f 075202d565de03aa52de56aa2e1bb2aa { 'aliquot_tag': 'DUP_b381fd85', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3N-00168.DUP_b381fd85.RNA-Seq.R2_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 200519_UNC31-K00269_0280_BHHKGNBBXY_CATAATAC-TTCTAACG_S6_L002_R2_001.fastq.gz 4211308110 FASTQ R2_L002 unaligned CPTAC3 15de8ab5-f8ea-483c-9ce1-0bde72a71a7a 7e19d1af8b162b458a3a22073153d8e2 { 'aliquot_tag': 'DUP_b381fd85', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3N-00168.DUP_b381fd85.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0020000006 07f4eaf3-04df-4863-bd92-56ba9dcb71df.rna_seq.transcriptome.gdc_realn.bam 12129171743 BAM transcriptome harmonized CPTAC3 9f08cc3c-c339-4d48-a549-eba3dc070a04 1f613da154798630d88ea44fb6680354 { 'aliquot_tag': 'DUP_b381fd85', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00168.DUP_bfe9a5bc.miRNA-Seq.T C3N-00168 CCRCC miRNA-Seq tumor CPT0019980006 200526_UNC32-K00270_0248_BHH7WFBBXY_GATCAG_S13_L003_R1_001.unaln.bam 199304708 BAM unaligned CPTAC3 f2e0266a-63ba-4aaf-be09-f3183a98c1e0 6ed238f11c7b4f3ee04ed0fee6da435d { 'aliquot_tag': 'DUP_bfe9a5bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00168.DUP_bfe9a5bc.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0019980006 f163afe5-3e77-4c04-87df-a3c3a35c7221_mirnaseq_gdc_realn.bam 220856363 BAM harmonized CPTAC3 83beb6c0-8fbd-4364-b6d1-31edfc9aa2d2 4231357025de36d9fc703865cab1487f { 'aliquot_tag': 'DUP_bfe9a5bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00168.DUP_bfe9a5bc.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 14d49ed3-43aa-4816-9556-8a9fb6199abb.rna_seq.chimeric.gdc_realn.bam 45907275 BAM chimeric harmonized CPTAC3 becd4c01-22bb-4b6f-bd80-d2c859350d99 9ba1f683d3feef090d8109ff4fedfe4d { 'aliquot_tag': 'DUP_bfe9a5bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00168.DUP_bfe9a5bc.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 14d49ed3-43aa-4816-9556-8a9fb6199abb.rna_seq.genomic.gdc_realn.bam 9117047130 BAM genomic harmonized CPTAC3 86df6df9-f98d-4746-9704-1db3b55f91df b59beb11d7919fdf22620127d92d4869 { 'aliquot_tag': 'DUP_bfe9a5bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00168.DUP_bfe9a5bc.RNA-Seq.R1_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGCGGCGT-CCTCGGTA_S8_L002_R1_001.fastq.gz 4364226137 FASTQ R1_L002 unaligned CPTAC3 7c3020d8-ddfa-4c72-bc6a-04f349f4a1f2 f3b710fcd22e8662372c8ba1916328bc { 'aliquot_tag': 'DUP_bfe9a5bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00168.DUP_bfe9a5bc.RNA-Seq.R2_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGCGGCGT-CCTCGGTA_S8_L002_R2_001.fastq.gz 5091998320 FASTQ R2_L002 unaligned CPTAC3 381701d8-7529-441b-93c2-657e05b87270 961ceacb93846415ac36bf96195aa556 { 'aliquot_tag': 'DUP_bfe9a5bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00168.DUP_bfe9a5bc.RNA-Seq.R1_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGCGGCGT-CCTCGGTA_S8_L002_R1_001.fastq.gz 4364226137 FASTQ R1_L002 unaligned CPTAC3 7c3020d8-ddfa-4c72-bc6a-04f349f4a1f2 f3b710fcd22e8662372c8ba1916328bc { 'aliquot_tag': 'DUP_bfe9a5bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3N-00168.DUP_bfe9a5bc.RNA-Seq.R2_L002.T C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 200519_UNC31-K00269_0280_BHHKGNBBXY_TGCGGCGT-CCTCGGTA_S8_L002_R2_001.fastq.gz 5091998320 FASTQ R2_L002 unaligned CPTAC3 381701d8-7529-441b-93c2-657e05b87270 961ceacb93846415ac36bf96195aa556 { 'aliquot_tag': 'DUP_bfe9a5bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3N-00168.DUP_bfe9a5bc.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019980006 14d49ed3-43aa-4816-9556-8a9fb6199abb.rna_seq.transcriptome.gdc_realn.bam 12206112551 BAM transcriptome harmonized CPTAC3 082b4d91-df67-4dd0-9dfb-eae3cc810d3a b200314a94f627da0404f8bb37f91040 { 'aliquot_tag': 'DUP_bfe9a5bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00168.MethArray.Green.A C3N-00168 CCRCC Methylation Array tissue_normal CPT0020020009 204930630081_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e6e22de4-05cb-4a2c-b1bb-8cc84e18beab 02ffa3666e6b6145a5e1780047e6f65b { 'aliquot_tag': 'ALQ_59feb374', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00168.MethArray.Green.T C3N-00168 CCRCC Methylation Array tumor CPT0019990009 202178770100_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 412dab18-7159-4dfa-add4-91b3b616bf44 06bd951e1be4fe9f11beeede774568f0 { 'aliquot_tag': 'ALQ_1236919d', 'gdc_sample_type': 'Primary Tumor' } @@ -18928,11 +20689,11 @@ C3N-00168.miRNA-Seq.T.hg38 C3N-00168 CCRCC miRNA-Seq tumor CPT0019990006 0c78502 C3N-00168.RNA-Seq.chimeric.A.hg38 C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 62df76e6-0a9f-4074-999b-257625b3793f.rna_seq.chimeric.gdc_realn.bam 65533781 BAM chimeric harmonized CPTAC3 699e93c4-b3c4-49f4-87ba-848697bbe723 7a066d0548c64cd9f14307493434d4b5 { 'aliquot_tag': 'ALQ_c941aee5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00168.RNA-Seq.chimeric.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 0c7f2260-89f4-4678-b973-d89e83f31820.rna_seq.chimeric.gdc_realn.bam 135807173 BAM chimeric harmonized CPTAC3 a90f4104-ec47-45b4-910d-48fa312b0065 1418e64f5683fe249ccc1148a5a94238 { 'aliquot_tag': 'ALQ_82898c0c', 'gdc_sample_type': 'Primary Tumor' } C3N-00168.RNA-Seq.genomic.A.hg38 C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 62df76e6-0a9f-4074-999b-257625b3793f.rna_seq.genomic.gdc_realn.bam 6766905247 BAM genomic harmonized CPTAC3 28cc5b37-465a-49ea-96e1-0c01835c0925 9a5c170a1244acc045f0df5ac81c45de { 'aliquot_tag': 'ALQ_c941aee5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00168.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 0c7f2260-89f4-4678-b973-d89e83f31820.rna_seq.genomic.gdc_realn.bam 7972243546 BAM genomic harmonized CPTAC3 2541fd48-a578-40d5-b0e9-98a6add46873 3f52bb88b95da5dc5b33bc7def258a2d { 'aliquot_tag': 'ALQ_82898c0c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00168.RNA-Seq.R1_L004.T C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L004_R1_001.fastq.gz 3864148159 FASTQ R1_L004 unaligned CPTAC3 c5ed3de6-ac9f-48c5-923c-79f0d45c0929 abb26f73427021c805e3da98f4244720 { 'aliquot_tag': 'ALQ_82898c0c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00168.RNA-Seq.R1_L007.A C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L007_R1_001.fastq.gz 3345283097 FASTQ R1_L007 unaligned CPTAC3 dbb0640c-e567-48bf-9a78-a36fb22cb612 c0f77954ce458e56403dee34ae05060e { 'aliquot_tag': 'ALQ_c941aee5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00168.RNA-Seq.R2_L004.T C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L004_R2_001.fastq.gz 4262014354 FASTQ R2_L004 unaligned CPTAC3 b9e5e48d-e2ee-4478-b3fe-5d4a04cc6e8c 215218034f200177fc273f7f75728c83 { 'aliquot_tag': 'ALQ_82898c0c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00168.RNA-Seq.R2_L007.A C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L007_R2_001.fastq.gz 3499237068 FASTQ R2_L007 unaligned CPTAC3 54ebbfd3-243e-4136-a4ec-896075f4a319 37a1c75cfadc4e59aa10c94652930784 { 'aliquot_tag': 'ALQ_c941aee5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00168.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 0c7f2260-89f4-4678-b973-d89e83f31820.rna_seq.genomic.gdc_realn.bam 7972243546 BAM genomic harmonized CPTAC3 f71e8b0f-4acb-49b9-9c43-bb2e021876f7 3f52bb88b95da5dc5b33bc7def258a2d { 'aliquot_tag': 'ALQ_82898c0c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00168.RNA-Seq.R1_L004.T C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L004_R1_001.fastq.gz 3864148159 FASTQ R1_L004 unaligned CPTAC3 c5ed3de6-ac9f-48c5-923c-79f0d45c0929 abb26f73427021c805e3da98f4244720 { 'aliquot_tag': 'ALQ_82898c0c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00168.RNA-Seq.R1_L007.A C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L007_R1_001.fastq.gz 3345283097 FASTQ R1_L007 unaligned CPTAC3 dbb0640c-e567-48bf-9a78-a36fb22cb612 c0f77954ce458e56403dee34ae05060e { 'aliquot_tag': 'ALQ_c941aee5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-00168.RNA-Seq.R2_L004.T C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L004_R2_001.fastq.gz 4262014354 FASTQ R2_L004 unaligned CPTAC3 b9e5e48d-e2ee-4478-b3fe-5d4a04cc6e8c 215218034f200177fc273f7f75728c83 { 'aliquot_tag': 'ALQ_82898c0c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00168.RNA-Seq.R2_L007.A C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L007_R2_001.fastq.gz 3499237068 FASTQ R2_L007 unaligned CPTAC3 54ebbfd3-243e-4136-a4ec-896075f4a319 37a1c75cfadc4e59aa10c94652930784 { 'aliquot_tag': 'ALQ_c941aee5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-00168.RNA-Seq.transcriptome.A.hg38 C3N-00168 CCRCC RNA-Seq tissue_normal CPT0020020006 62df76e6-0a9f-4074-999b-257625b3793f.rna_seq.transcriptome.gdc_realn.bam 8820648785 BAM transcriptome harmonized CPTAC3 9380a013-b2a3-455d-ad71-55349aec8699 ef5e715a648a1f7d1593e83d465565f6 { 'aliquot_tag': 'ALQ_c941aee5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00168.RNA-Seq.transcriptome.T.hg38 C3N-00168 CCRCC RNA-Seq tumor CPT0019990006 0c7f2260-89f4-4678-b973-d89e83f31820.rna_seq.transcriptome.gdc_realn.bam 10615660338 BAM transcriptome harmonized CPTAC3 0c4c816b-4ef9-4881-93a2-7825152d4588 e22d4d201af7c559ca546aeae73c87c5 { 'aliquot_tag': 'ALQ_82898c0c', 'gdc_sample_type': 'Primary Tumor' } C3N-00168.WGS.A C3N-00168 CCRCC WGS tissue_normal CPT0020020009 CPT0020020009.WholeGenome.RP-1303.bam 55277454894 BAM aligned CPTAC3 746ff435-62bc-43c2-9f1b-36b2eada4dbf 9f937ad077b07ec331a92b397b1c62fe { 'aliquot_tag': 'ALQ_59feb374', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -18957,12 +20718,12 @@ C3N-00169.miRNA-Seq.T C3N-00169 LUAD miRNA-Seq tumor CPT0014860006 181012_UNC32- C3N-00169.miRNA-Seq.T.hg38 C3N-00169 LUAD miRNA-Seq tumor CPT0014860006 1a929667-b416-4b94-a7a8-febdfe299556_mirnaseq_gdc_realn.bam 208572483 BAM harmonized CPTAC3 892b3fad-756a-43d9-a5b4-feb7c0a4b10e f2949207966e0c58b30ce32f4a3e5a3c { 'aliquot_tag': 'ALQ_aa52a9b8', 'gdc_sample_type': 'Primary Tumor' } C3N-00169.RNA-Seq.chimeric.A.hg38 C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 99db4685-0431-4417-b198-fb8db4972ca4.rna_seq.chimeric.gdc_realn.bam 42809450 BAM chimeric harmonized CPTAC3 c7c18e65-ea1c-42f7-8288-8ad9b9ad9414 a1986150a9c6454503de9cb59db1ba43 { 'aliquot_tag': 'ALQ_a9eef56d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00169.RNA-Seq.chimeric.T.hg38 C3N-00169 LUAD RNA-Seq tumor CPT0014860006 f51401b0-8093-40d6-8c37-8457b6fc5ba1.rna_seq.chimeric.gdc_realn.bam 91750093 BAM chimeric harmonized CPTAC3 798aa7b2-d82b-4758-8ac0-bb0a36da5d1c 93e0a5d303132fd48866dd4320d87931 { 'aliquot_tag': 'ALQ_aa52a9b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-00169.RNA-Seq.genomic.A.hg38 C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 99db4685-0431-4417-b198-fb8db4972ca4.rna_seq.genomic.gdc_realn.bam 6909830414 BAM genomic harmonized CPTAC3 f630d4e6-d11c-43ee-b48c-e25472adea5e b902d3f9a8a2888e4aca11bcc4aef47b { 'aliquot_tag': 'ALQ_a9eef56d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00169.RNA-Seq.genomic.T.hg38 C3N-00169 LUAD RNA-Seq tumor CPT0014860006 f51401b0-8093-40d6-8c37-8457b6fc5ba1.rna_seq.genomic.gdc_realn.bam 11314632137 BAM genomic harmonized CPTAC3 85f58fa1-1186-45fc-8523-ee4b8f2a2359 36a669660cc586f7eda87a48ea5d3330 { 'aliquot_tag': 'ALQ_aa52a9b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-00169.RNA-Seq.R1_L005.A C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTTCC_S18_L005_R1_001.fastq.gz 3276435555 FASTQ R1_L005 unaligned CPTAC3 e7cbc140-6693-4e04-8109-9ddd8f4dda7b 6c71f613b2ed36267f66e7e5d574c485 { 'aliquot_tag': 'ALQ_a9eef56d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00169.RNA-Seq.R1_L008.T C3N-00169 LUAD RNA-Seq tumor CPT0014860006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L008_R1_001.fastq.gz 5142375990 FASTQ R1_L008 unaligned CPTAC3 a999524b-0b2b-4c74-a53a-12ac100f22fc 3371f3daeb0eed8aa5a3900fe479937b { 'aliquot_tag': 'ALQ_aa52a9b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-00169.RNA-Seq.R2_L005.A C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTTCC_S18_L005_R2_001.fastq.gz 3451101401 FASTQ R2_L005 unaligned CPTAC3 d99434f4-23cb-46bf-bede-f719977004ca a9fa81ae27ede704b3ba430b43ebca9c { 'aliquot_tag': 'ALQ_a9eef56d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00169.RNA-Seq.R2_L008.T C3N-00169 LUAD RNA-Seq tumor CPT0014860006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L008_R2_001.fastq.gz 5558564613 FASTQ R2_L008 unaligned CPTAC3 9159c7d7-2b4c-46b8-8e60-6767546d2068 96ef0a4ab83f454a8de6494334939da7 { 'aliquot_tag': 'ALQ_aa52a9b8', 'gdc_sample_type': 'Primary Tumor' } +C3N-00169.RNA-Seq.genomic.A.hg38 C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 99db4685-0431-4417-b198-fb8db4972ca4.rna_seq.genomic.gdc_realn.bam 6909830414 BAM genomic harmonized CPTAC3 3b5992d8-e89e-4f13-9f16-6d4c90ff09fd b902d3f9a8a2888e4aca11bcc4aef47b { 'aliquot_tag': 'ALQ_a9eef56d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00169.RNA-Seq.genomic.T.hg38 C3N-00169 LUAD RNA-Seq tumor CPT0014860006 f51401b0-8093-40d6-8c37-8457b6fc5ba1.rna_seq.genomic.gdc_realn.bam 11314632137 BAM genomic harmonized CPTAC3 209d0f6d-6c59-4894-b29d-4a136a87f40f 36a669660cc586f7eda87a48ea5d3330 { 'aliquot_tag': 'ALQ_aa52a9b8', 'gdc_sample_type': 'Primary Tumor' } +C3N-00169.RNA-Seq.R1_L005.A C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTTCC_S18_L005_R1_001.fastq.gz 3276435555 FASTQ R1_L005 unaligned CPTAC3 e7cbc140-6693-4e04-8109-9ddd8f4dda7b 6c71f613b2ed36267f66e7e5d574c485 { 'aliquot_tag': 'ALQ_a9eef56d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00169.RNA-Seq.R1_L008.T C3N-00169 LUAD RNA-Seq tumor CPT0014860006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L008_R1_001.fastq.gz 5142375990 FASTQ R1_L008 unaligned CPTAC3 a999524b-0b2b-4c74-a53a-12ac100f22fc 3371f3daeb0eed8aa5a3900fe479937b { 'aliquot_tag': 'ALQ_aa52a9b8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00169.RNA-Seq.R2_L005.A C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 171215_UNC32-K00270_0072_AHN3THBBXX_AGTTCC_S18_L005_R2_001.fastq.gz 3451101401 FASTQ R2_L005 unaligned CPTAC3 d99434f4-23cb-46bf-bede-f719977004ca a9fa81ae27ede704b3ba430b43ebca9c { 'aliquot_tag': 'ALQ_a9eef56d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-00169.RNA-Seq.R2_L008.T C3N-00169 LUAD RNA-Seq tumor CPT0014860006 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L008_R2_001.fastq.gz 5558564613 FASTQ R2_L008 unaligned CPTAC3 9159c7d7-2b4c-46b8-8e60-6767546d2068 96ef0a4ab83f454a8de6494334939da7 { 'aliquot_tag': 'ALQ_aa52a9b8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00169.RNA-Seq.transcriptome.A.hg38 C3N-00169 LUAD RNA-Seq tissue_normal CPT0014930006 99db4685-0431-4417-b198-fb8db4972ca4.rna_seq.transcriptome.gdc_realn.bam 7645768813 BAM transcriptome harmonized CPTAC3 93ea829a-ad46-47d0-83ea-c954962a8056 d8b6ea05af8f4799b5ba616d9e0686ab { 'aliquot_tag': 'ALQ_a9eef56d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00169.RNA-Seq.transcriptome.T.hg38 C3N-00169 LUAD RNA-Seq tumor CPT0014860006 f51401b0-8093-40d6-8c37-8457b6fc5ba1.rna_seq.transcriptome.gdc_realn.bam 13398685777 BAM transcriptome harmonized CPTAC3 1b0f1e4b-d083-4e7c-98a8-7544e5d809ff d5d31957423fe59a8747cbc5895e0d8c { 'aliquot_tag': 'ALQ_aa52a9b8', 'gdc_sample_type': 'Primary Tumor' } C3N-00169.WGS.A C3N-00169 LUAD WGS tissue_normal CPT0014930009 CPT0014930009.WholeGenome.RP-1303.bam 51434080676 BAM aligned CPTAC3 70244afb-1e6c-4118-bcbf-6e859bf5dcfc fc215a97c7316d5e64c8b057b681c92a { 'aliquot_tag': 'ALQ_3951e8fc', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -18983,16 +20744,16 @@ C3N-00171.miRNA-Seq.A C3N-00171 SAR miRNA-Seq tissue_normal CPT0013750009 181113 C3N-00171.miRNA-Seq.A.hg38 C3N-00171 SAR miRNA-Seq tissue_normal CPT0013750009 cdd7e279-6da6-4c82-8efb-68466180a5a6_mirnaseq_gdc_realn.bam 269705616 BAM harmonized CPTAC3 488058f0-c741-4a15-a7ec-ea4d82047feb fa6e9eebdc4a029a5002da085de32d29 { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00171.miRNA-Seq.T C3N-00171 SAR miRNA-Seq tumor CPT0013730006 180924_UNC31-K00269_0154_AHWTMLBBXX_AGTCAA_S18_L001_R1_001.unaln.bam 208467955 BAM unaligned CPTAC3 55e4bb24-de27-41f4-befd-6b1e69e73f60 3c8906c02a9a378588047a3179be486a { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor' } C3N-00171.miRNA-Seq.T.hg38 C3N-00171 SAR miRNA-Seq tumor CPT0013730006 c6979db7-ce49-4573-acd8-a97e68016400_mirnaseq_gdc_realn.bam 224009016 BAM harmonized CPTAC3 6b4971e0-7f02-47b2-b581-b560f74ee562 a2f4f97b239bf422d1365043961fccd9 { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor' } -C3N-00171.RNA-Seq.chimeric.A.hg38 C3N-00171 SAR RNA-Seq tissue_normal CPT0013750009 38ab4de1-c205-4658-a688-82adee0b856c.rna_seq.chimeric.gdc_realn.bam 24598878 BAM chimeric harmonized CPTAC3 d56b38ec-0b75-40ff-bc36-9c8087c9f1ea 8b35557f4cbe8d10cfa148ea5b1c313c { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00171.RNA-Seq.chimeric.T.hg38 C3N-00171 SAR RNA-Seq tumor CPT0013730006 b803b362-da27-44c3-8e78-1fd41c88501c.rna_seq.chimeric.gdc_realn.bam 44470767 BAM chimeric harmonized CPTAC3 cd887980-d34d-482f-96be-40fa3dd1fa97 0df59b9caa7d522ac898a190a1674e0a { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor' } -C3N-00171.RNA-Seq.genomic.A.hg38 C3N-00171 SAR RNA-Seq tissue_normal CPT0013750009 38ab4de1-c205-4658-a688-82adee0b856c.rna_seq.genomic.gdc_realn.bam 5862005126 BAM genomic harmonized CPTAC3 055858b2-c3b5-491b-b3a7-d656a9a206cf 3feee66825a6e5bb3832892c3c812280 { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00171.RNA-Seq.genomic.T.hg38 C3N-00171 SAR RNA-Seq tumor CPT0013730006 b803b362-da27-44c3-8e78-1fd41c88501c.rna_seq.genomic.gdc_realn.bam 9160332166 BAM genomic harmonized CPTAC3 8843c6e1-9e98-4f93-bbf7-fe7180dd90b4 4fe67dbb1f3d17e2bdc7b5c6b8834a13 { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor' } -C3N-00171.RNA-Seq.R1_L006.A C3N-00171 SAR RNA-Seq tissue_normal CPT0013750009 180606_UNC32-K00270_0097_AHVCKFBBXX_CCGTCC_S23_L006_R1_001.fastq.gz 3035627976 FASTQ R1_L006 unaligned CPTAC3 7d6ff25b-a8eb-40de-93be-70f2e154065c 7fcc1a468c9a49ef315e485d8c2b1c1c { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00171.RNA-Seq.R1_L007.T C3N-00171 SAR RNA-Seq tumor CPT0013730006 170823_UNC31-K00269_0076_BHLCTFBBXX_GAGTGG_S8_L007_R1_001.fastq.gz 4328058511 FASTQ R1_L007 unaligned CPTAC3 938ded1a-3a4a-4b4d-8112-547c7533af56 364d5a5a1aba354c8f0d2529f6af3e7c { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor' } -C3N-00171.RNA-Seq.R2_L006.A C3N-00171 SAR RNA-Seq tissue_normal CPT0013750009 180606_UNC32-K00270_0097_AHVCKFBBXX_CCGTCC_S23_L006_R2_001.fastq.gz 3173453079 FASTQ R2_L006 unaligned CPTAC3 07407c27-3dde-48ac-907f-86362ed08ed8 e0edc67f6ff88964da64b4c7aee4a98b { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00171.RNA-Seq.R2_L007.T C3N-00171 SAR RNA-Seq tumor CPT0013730006 170823_UNC31-K00269_0076_BHLCTFBBXX_GAGTGG_S8_L007_R2_001.fastq.gz 4686422369 FASTQ R2_L007 unaligned CPTAC3 904f9d17-81c9-4fce-a956-3a5351692ebe e33c2e58252e7d9067117b5ee69360c0 { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor' } -C3N-00171.RNA-Seq.transcriptome.A.hg38 C3N-00171 SAR RNA-Seq tissue_normal CPT0013750009 38ab4de1-c205-4658-a688-82adee0b856c.rna_seq.transcriptome.gdc_realn.bam 12343394104 BAM transcriptome harmonized CPTAC3 cfdf33af-8db7-42e8-90a0-580b51cd3c60 af3538ec4a3b57a5a6d054deede7337e { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00171.RNA-Seq.transcriptome.T.hg38 C3N-00171 SAR RNA-Seq tumor CPT0013730006 b803b362-da27-44c3-8e78-1fd41c88501c.rna_seq.transcriptome.gdc_realn.bam 12456926508 BAM transcriptome harmonized CPTAC3 92f4f7b6-7405-4b81-bfa9-d2b7ee9079a6 c1eb44cf367c976ea0db2ca7b2003f56 { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor' } +C3N-00171.RNA-Seq.chimeric.A.hg38 C3N-00171 SAR RNA-Seq tissue_normal CPT0013750009 f335bec5-453d-47ce-b9ae-0c87e2861d81.rna_seq.chimeric.gdc_realn.bam 24590986 BAM chimeric harmonized CPTAC3 793112f3-bb5b-41ce-b84a-f11bd79da81a 1b05551db6f8e015456f9928d331442f { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00171.RNA-Seq.chimeric.T.hg38 C3N-00171 SAR RNA-Seq tumor CPT0013730006 42423070-840e-4d83-a50b-0a880aef3b06.rna_seq.chimeric.gdc_realn.bam 44461267 BAM chimeric harmonized CPTAC3 7855fbad-7f03-4bad-9343-eb4b7e5453ff 40b10aebeaf423726b016d560862f498 { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor' } +C3N-00171.RNA-Seq.genomic.A.hg38 C3N-00171 SAR RNA-Seq tissue_normal CPT0013750009 f335bec5-453d-47ce-b9ae-0c87e2861d81.rna_seq.genomic.gdc_realn.bam 5862537055 BAM genomic harmonized CPTAC3 9d23bcc8-e3c2-4aed-8d94-4675a0929062 72115b8400a46a55a8ebd6e72732877f { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00171.RNA-Seq.genomic.T.hg38 C3N-00171 SAR RNA-Seq tumor CPT0013730006 42423070-840e-4d83-a50b-0a880aef3b06.rna_seq.genomic.gdc_realn.bam 9161149919 BAM genomic harmonized CPTAC3 d0b2f772-5903-444e-b08b-2d8ced2d8769 76b202982ccf1f58f9c62bcd11c3f462 { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor' } +C3N-00171.RNA-Seq.R1_L006.A C3N-00171 SAR RNA-Seq tissue_normal CPT0013750009 180606_UNC32-K00270_0097_AHVCKFBBXX_CCGTCC_S23_L006_R1_001.fastq.gz 3035627976 FASTQ R1_L006 unaligned CPTAC3 7d6ff25b-a8eb-40de-93be-70f2e154065c 7fcc1a468c9a49ef315e485d8c2b1c1c { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00171.RNA-Seq.R1_L007.T C3N-00171 SAR RNA-Seq tumor CPT0013730006 170823_UNC31-K00269_0076_BHLCTFBBXX_GAGTGG_S8_L007_R1_001.fastq.gz 4328058511 FASTQ R1_L007 unaligned CPTAC3 938ded1a-3a4a-4b4d-8112-547c7533af56 364d5a5a1aba354c8f0d2529f6af3e7c { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00171.RNA-Seq.R2_L006.A C3N-00171 SAR RNA-Seq tissue_normal CPT0013750009 180606_UNC32-K00270_0097_AHVCKFBBXX_CCGTCC_S23_L006_R2_001.fastq.gz 3173453079 FASTQ R2_L006 unaligned CPTAC3 07407c27-3dde-48ac-907f-86362ed08ed8 e0edc67f6ff88964da64b4c7aee4a98b { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-00171.RNA-Seq.R2_L007.T C3N-00171 SAR RNA-Seq tumor CPT0013730006 170823_UNC31-K00269_0076_BHLCTFBBXX_GAGTGG_S8_L007_R2_001.fastq.gz 4686422369 FASTQ R2_L007 unaligned CPTAC3 904f9d17-81c9-4fce-a956-3a5351692ebe e33c2e58252e7d9067117b5ee69360c0 { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-00171.RNA-Seq.transcriptome.A.hg38 C3N-00171 SAR RNA-Seq tissue_normal CPT0013750009 f335bec5-453d-47ce-b9ae-0c87e2861d81.rna_seq.transcriptome.gdc_realn.bam 12593444088 BAM transcriptome harmonized CPTAC3 eaa5bc2b-a1e0-4096-b284-e6f4e215fe99 99c734ff4689299f50eccd7b76f94bd1 { 'aliquot_tag': 'ALQ_49bc42a2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00171.RNA-Seq.transcriptome.T.hg38 C3N-00171 SAR RNA-Seq tumor CPT0013730006 42423070-840e-4d83-a50b-0a880aef3b06.rna_seq.transcriptome.gdc_realn.bam 14404302319 BAM transcriptome harmonized CPTAC3 64685832-d1e8-4851-bb41-2714751ad770 d4268d031e0696b909ee311c68568ddb { 'aliquot_tag': 'ALQ_5643aa93', 'gdc_sample_type': 'Primary Tumor' } C3N-00171.WGS.A C3N-00171 SAR WGS tissue_normal CPT0013750006 CPT0013750006.WholeGenome.RP-1303.bam 58594526252 BAM aligned CPTAC3 ee11e89d-a140-431f-a597-9e143ce399f4 3c2fc552565e2d15b619985dc4bc32b5 { 'aliquot_tag': 'ALQ_d9035f33', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00171.WGS.A.hg38 C3N-00171 SAR WGS tissue_normal CPT0013750006 0d3ad58d-78fb-4660-992d-07ee61e348a7_wgs_gdc_realn.bam 85261686944 BAM harmonized CPTAC3 8e3fc6fb-9e5c-4d24-bbf3-3015b32de14b d158eddf446f661312e5c909f3595237 { 'aliquot_tag': 'ALQ_d9035f33', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00171.WGS.N C3N-00171 SAR WGS blood_normal CPT0016520002 CPT0016520002.WholeGenome.RP-1303.bam 72948229053 BAM aligned CPTAC3 58f5c4c7-a51e-4bc4-b62e-8f4e37c067be 7c735bd4af50c6d53315a2fa6ebea209 { 'aliquot_tag': 'ALQ_73bec996', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19015,12 +20776,12 @@ C3N-00175.miRNA-Seq.A C3N-00175 LUAD miRNA-Seq tissue_normal CPT0013910005 18110 C3N-00175.miRNA-Seq.A.hg38 C3N-00175 LUAD miRNA-Seq tissue_normal CPT0013910005 5d11923b-f615-4014-be9a-af3d007940bb_mirnaseq_gdc_realn.bam 208058778 BAM harmonized CPTAC3 b9cc7c78-9002-438e-8a2c-6034344072c5 91d6f38301a9a892b9845b3ec592dbff { 'aliquot_tag': 'ALQ_8f80c939', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00175.RNA-Seq.chimeric.A.hg38 C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 f56820b8-f0ae-47c9-947d-410a6e1cf2c5.rna_seq.chimeric.gdc_realn.bam 59266497 BAM chimeric harmonized CPTAC3 656ed925-dc92-4039-a445-ffb4fb1e01bc a5c56d5623abb93e86cb51a95bd0dded { 'aliquot_tag': 'ALQ_8f80c939', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00175.RNA-Seq.chimeric.T.hg38 C3N-00175 LUAD RNA-Seq tumor CPT0013880013 dd5b3bdf-9753-4e8a-9455-c7c51aebd459.rna_seq.chimeric.gdc_realn.bam 46658204 BAM chimeric harmonized CPTAC3 ae68238d-e804-422d-95a3-ccab5ba740f5 3d48d34af5404385022aa0669a1aa3c1 { 'aliquot_tag': 'ALQ_b9b4ec99', 'gdc_sample_type': 'Primary Tumor' } -C3N-00175.RNA-Seq.genomic.A.hg38 C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 f56820b8-f0ae-47c9-947d-410a6e1cf2c5.rna_seq.genomic.gdc_realn.bam 7216302327 BAM genomic harmonized CPTAC3 fbbb8a1c-3b59-48b1-85dd-a73cc199f2df d85e210dc20b9ec932a2a54a84f37af5 { 'aliquot_tag': 'ALQ_8f80c939', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00175.RNA-Seq.genomic.A.hg38 C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 f56820b8-f0ae-47c9-947d-410a6e1cf2c5.rna_seq.genomic.gdc_realn.bam 7216302327 BAM genomic harmonized CPTAC3 fc05e42e-036e-4e9c-881a-e4358165fae4 d85e210dc20b9ec932a2a54a84f37af5 { 'aliquot_tag': 'ALQ_8f80c939', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00175.RNA-Seq.genomic.T.hg38 C3N-00175 LUAD RNA-Seq tumor CPT0013880013 dd5b3bdf-9753-4e8a-9455-c7c51aebd459.rna_seq.genomic.gdc_realn.bam 10849229706 BAM genomic harmonized CPTAC3 c362abb7-4ad9-44ca-90a4-0cc75df3763e b3060f5738c453eb453842bef2bfb39f { 'aliquot_tag': 'ALQ_b9b4ec99', 'gdc_sample_type': 'Primary Tumor' } -C3N-00175.RNA-Seq.R1_L003.T C3N-00175 LUAD RNA-Seq tumor CPT0013880013 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L003_R1_001.fastq.gz 4032180329 FASTQ R1_L003 unaligned CPTAC3 2bc03bbd-a5ad-472b-9b07-9eb7c4139a7b 7852e6884403c835a63b2dd51a47b7c0 { 'aliquot_tag': 'ALQ_b9b4ec99', 'gdc_sample_type': 'Primary Tumor' } -C3N-00175.RNA-Seq.R1_L004.A C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 171215_UNC32-K00270_0072_AHN3THBBXX_ACTGAT_S15_L004_R1_001.fastq.gz 3270200911 FASTQ R1_L004 unaligned CPTAC3 0a5b7b7e-c473-4b8d-a522-898fad4ce3f5 46d6c3ae61f1b80b61dd81bea9996edd { 'aliquot_tag': 'ALQ_8f80c939', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00175.RNA-Seq.R2_L003.T C3N-00175 LUAD RNA-Seq tumor CPT0013880013 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L003_R2_001.fastq.gz 4028284906 FASTQ R2_L003 unaligned CPTAC3 ff2a0fdc-1273-4b4d-bf82-18edeff7e15e 0d22761fad1a097e56a883326d91d4ed { 'aliquot_tag': 'ALQ_b9b4ec99', 'gdc_sample_type': 'Primary Tumor' } -C3N-00175.RNA-Seq.R2_L004.A C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 171215_UNC32-K00270_0072_AHN3THBBXX_ACTGAT_S15_L004_R2_001.fastq.gz 3455747042 FASTQ R2_L004 unaligned CPTAC3 0fcd97be-12a5-4bd1-83b8-13f1acc67931 6db3a73d1a034a0aed43b61fc8bdfe7a { 'aliquot_tag': 'ALQ_8f80c939', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00175.RNA-Seq.R1_L003.T C3N-00175 LUAD RNA-Seq tumor CPT0013880013 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L003_R1_001.fastq.gz 4032180329 FASTQ R1_L003 unaligned CPTAC3 2bc03bbd-a5ad-472b-9b07-9eb7c4139a7b 7852e6884403c835a63b2dd51a47b7c0 { 'aliquot_tag': 'ALQ_b9b4ec99', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00175.RNA-Seq.R1_L004.A C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 171215_UNC32-K00270_0072_AHN3THBBXX_ACTGAT_S15_L004_R1_001.fastq.gz 3270200911 FASTQ R1_L004 unaligned CPTAC3 0a5b7b7e-c473-4b8d-a522-898fad4ce3f5 46d6c3ae61f1b80b61dd81bea9996edd { 'aliquot_tag': 'ALQ_8f80c939', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-00175.RNA-Seq.R2_L003.T C3N-00175 LUAD RNA-Seq tumor CPT0013880013 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L003_R2_001.fastq.gz 4028284906 FASTQ R2_L003 unaligned CPTAC3 ff2a0fdc-1273-4b4d-bf82-18edeff7e15e 0d22761fad1a097e56a883326d91d4ed { 'aliquot_tag': 'ALQ_b9b4ec99', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00175.RNA-Seq.R2_L004.A C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 171215_UNC32-K00270_0072_AHN3THBBXX_ACTGAT_S15_L004_R2_001.fastq.gz 3455747042 FASTQ R2_L004 unaligned CPTAC3 0fcd97be-12a5-4bd1-83b8-13f1acc67931 6db3a73d1a034a0aed43b61fc8bdfe7a { 'aliquot_tag': 'ALQ_8f80c939', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3N-00175.RNA-Seq.transcriptome.A.hg38 C3N-00175 LUAD RNA-Seq tissue_normal CPT0013910005 f56820b8-f0ae-47c9-947d-410a6e1cf2c5.rna_seq.transcriptome.gdc_realn.bam 7308848016 BAM transcriptome harmonized CPTAC3 4b400ef3-4417-4618-9054-f002cf1e5b4c 56e6d62dc042227cef07126f9fb3250a { 'aliquot_tag': 'ALQ_8f80c939', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00175.RNA-Seq.transcriptome.T.hg38 C3N-00175 LUAD RNA-Seq tumor CPT0013880013 dd5b3bdf-9753-4e8a-9455-c7c51aebd459.rna_seq.transcriptome.gdc_realn.bam 7453969316 BAM transcriptome harmonized CPTAC3 0dcbf8c3-95a1-4ccb-a751-ded95936a0e5 df19ebb7658181866aa6527281d47b47 { 'aliquot_tag': 'ALQ_b9b4ec99', 'gdc_sample_type': 'Primary Tumor' } C3N-00175.WGS.A C3N-00175 LUAD WGS tissue_normal CPT0013910008 CPT0013910008.WholeGenome.RP-1303.bam 53876786195 BAM aligned CPTAC3 7658a7ec-24c1-4e76-9c04-71f189474c8a 56b3a6c65527960675d08a47da25d9f9 { 'aliquot_tag': 'ALQ_f131b584', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19038,16 +20799,16 @@ C3N-00175.WXS.T.hg38 C3N-00175 LUAD WXS tumor CPT0013880009 0750c130-b7f0-4f82-9 C3N-00177.DUP_45bd0790.miRNA-Seq.T C3N-00177 CCRCC miRNA-Seq tumor CPT0020110006 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTCAA_S37_L003_R1_001.unaln.bam 296557040 BAM unaligned CPTAC3 69762e2a-0ebe-4992-b488-b2254a56fc73 a0c4a7b3e502dd8bef599ff11b5e0b77 { 'aliquot_tag': 'DUP_45bd0790', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00177.DUP_45bd0790.miRNA-Seq.T.hg38 C3N-00177 CCRCC miRNA-Seq tumor CPT0020110006 b7012c66-1737-4039-b773-6f86acc15a53_mirnaseq_gdc_realn.bam 324585628 BAM harmonized CPTAC3 23a0facc-55b6-409e-8648-a3f59c89c860 50a128c1004c4d7d989cd492a2e97e43 { 'aliquot_tag': 'DUP_45bd0790', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00177.DUP_45bd0790.RNA-Seq.chimeric.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 29db59af-56f1-4448-b04b-a46220df6c89.rna_seq.chimeric.gdc_realn.bam 67379430 BAM chimeric harmonized CPTAC3 e3442666-18dc-4f06-b6dd-57826561687d 4231250a57f3739324e7c316c9072ad8 { 'aliquot_tag': 'DUP_45bd0790', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00177.DUP_45bd0790.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 29db59af-56f1-4448-b04b-a46220df6c89.rna_seq.genomic.gdc_realn.bam 6772079184 BAM genomic harmonized CPTAC3 e9af598d-a705-4a82-b069-0636fa9e812f 78973b48e565ddce89184b7cf5034350 { 'aliquot_tag': 'DUP_45bd0790', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00177.DUP_45bd0790.RNA-Seq.R1_L003.T C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 200519_UNC31-K00269_0280_BHHKGNBBXY_CGGAACTG-CACTACGA_S10_L003_R1_001.fastq.gz 3145536294 FASTQ R1_L003 unaligned CPTAC3 5168c8a9-b730-40ea-aab2-8ef26109a4e0 1f71872041a5688f83c75a7642cca2d3 { 'aliquot_tag': 'DUP_45bd0790', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00177.DUP_45bd0790.RNA-Seq.R2_L003.T C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 200519_UNC31-K00269_0280_BHHKGNBBXY_CGGAACTG-CACTACGA_S10_L003_R2_001.fastq.gz 3680735728 FASTQ R2_L003 unaligned CPTAC3 d4133ba7-00da-4152-9808-f7ae0c7f56dd 97675854c26af7607b2ab2316679734d { 'aliquot_tag': 'DUP_45bd0790', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00177.DUP_45bd0790.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 29db59af-56f1-4448-b04b-a46220df6c89.rna_seq.genomic.gdc_realn.bam 6772079184 BAM genomic harmonized CPTAC3 1f342cd2-1f5f-4126-96d5-aa8a87d95f1d 78973b48e565ddce89184b7cf5034350 { 'aliquot_tag': 'DUP_45bd0790', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00177.DUP_45bd0790.RNA-Seq.R1_L003.T C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 200519_UNC31-K00269_0280_BHHKGNBBXY_CGGAACTG-CACTACGA_S10_L003_R1_001.fastq.gz 3145536294 FASTQ R1_L003 unaligned CPTAC3 5168c8a9-b730-40ea-aab2-8ef26109a4e0 1f71872041a5688f83c75a7642cca2d3 { 'aliquot_tag': 'DUP_45bd0790', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L003' } +C3N-00177.DUP_45bd0790.RNA-Seq.R2_L003.T C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 200519_UNC31-K00269_0280_BHHKGNBBXY_CGGAACTG-CACTACGA_S10_L003_R2_001.fastq.gz 3680735728 FASTQ R2_L003 unaligned CPTAC3 d4133ba7-00da-4152-9808-f7ae0c7f56dd 97675854c26af7607b2ab2316679734d { 'aliquot_tag': 'DUP_45bd0790', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L003' } C3N-00177.DUP_45bd0790.RNA-Seq.transcriptome.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020110006 29db59af-56f1-4448-b04b-a46220df6c89.rna_seq.transcriptome.gdc_realn.bam 9229375362 BAM transcriptome harmonized CPTAC3 11b4f75e-2b8c-4024-b395-fdc88cf440e2 8e9866e6269bc3a0dc37c6fc87ec3f78 { 'aliquot_tag': 'DUP_45bd0790', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00177.DUP_78dd2e20.miRNA-Seq.T C3N-00177 CCRCC miRNA-Seq tumor CPT0020100006 200526_UNC32-K00270_0248_BHH7WFBBXY_CTTGTA_S41_L003_R1_001.unaln.bam 252516870 BAM unaligned CPTAC3 d4160895-9eb9-4926-a951-7abd4496d2cb bdcf9d4f81bd41350b8c92a9c1880e96 { 'aliquot_tag': 'DUP_78dd2e20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00177.DUP_78dd2e20.miRNA-Seq.T.hg38 C3N-00177 CCRCC miRNA-Seq tumor CPT0020100006 ef936a66-c615-40f8-a453-5a9fd3a6c66a_mirnaseq_gdc_realn.bam 277438668 BAM harmonized CPTAC3 9ead9508-e3c0-49d5-a104-0d3634bd3ef0 38ef2d744a6bdccffda2a2e43451ca84 { 'aliquot_tag': 'DUP_78dd2e20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00177.DUP_78dd2e20.RNA-Seq.chimeric.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 0f2ca7e9-2250-4d03-a84a-675d7d5cad49.rna_seq.chimeric.gdc_realn.bam 60576615 BAM chimeric harmonized CPTAC3 8bbe73df-66c1-4bd9-8767-6fb275a1dadb 87821b56e68b410851a97c42b4db7a55 { 'aliquot_tag': 'DUP_78dd2e20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00177.DUP_78dd2e20.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 0f2ca7e9-2250-4d03-a84a-675d7d5cad49.rna_seq.genomic.gdc_realn.bam 8172206994 BAM genomic harmonized CPTAC3 1dfb622c-2f64-448b-a297-48ea1b23c150 601fec8a09c4b8dafe0e0d30848aee0e { 'aliquot_tag': 'DUP_78dd2e20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00177.DUP_78dd2e20.RNA-Seq.R1_L002.T C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGCTCGCT-GCAGAATC_S5_L002_R1_001.fastq.gz 3912700020 FASTQ R1_L002 unaligned CPTAC3 159f5da6-9d77-46ca-9686-54a96c23a746 3fd7bd18a9a92a1d1a9bf63ef32c4e34 { 'aliquot_tag': 'DUP_78dd2e20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00177.DUP_78dd2e20.RNA-Seq.R2_L002.T C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGCTCGCT-GCAGAATC_S5_L002_R2_001.fastq.gz 4483396676 FASTQ R2_L002 unaligned CPTAC3 91158ace-2be6-4c55-9843-3ba72f96210e 56bc32f9910a6ab06443202f57adf23c { 'aliquot_tag': 'DUP_78dd2e20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00177.DUP_78dd2e20.RNA-Seq.R1_L002.T C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGCTCGCT-GCAGAATC_S5_L002_R1_001.fastq.gz 3912700020 FASTQ R1_L002 unaligned CPTAC3 159f5da6-9d77-46ca-9686-54a96c23a746 3fd7bd18a9a92a1d1a9bf63ef32c4e34 { 'aliquot_tag': 'DUP_78dd2e20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3N-00177.DUP_78dd2e20.RNA-Seq.R2_L002.T C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGCTCGCT-GCAGAATC_S5_L002_R2_001.fastq.gz 4483396676 FASTQ R2_L002 unaligned CPTAC3 91158ace-2be6-4c55-9843-3ba72f96210e 56bc32f9910a6ab06443202f57adf23c { 'aliquot_tag': 'DUP_78dd2e20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3N-00177.DUP_78dd2e20.RNA-Seq.transcriptome.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020100006 0f2ca7e9-2250-4d03-a84a-675d7d5cad49.rna_seq.transcriptome.gdc_realn.bam 11360843616 BAM transcriptome harmonized CPTAC3 32d2bb16-2140-4029-8493-a0d242799189 12d1dc6089222dbf6a1ee2cdcd2db988 { 'aliquot_tag': 'DUP_78dd2e20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00177.DUP_d5021a01.MethArray.Green.T C3N-00177 CCRCC Methylation Array tumor CPT0020110009 204372030127_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 5dbad71a-9e2f-4fbd-9b43-a93aa49871e1 5c45a3d0f9afc209315f65f081da1d44 { 'aliquot_tag': 'DUP_d5021a01', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00177.DUP_d5021a01.MethArray.Red.T C3N-00177 CCRCC Methylation Array tumor CPT0020110009 204372030127_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 650b2380-5cb8-4293-9962-37751da2eb9b 4819e7ba19cebe44cf8321ac77bbe4c6 { 'aliquot_tag': 'DUP_d5021a01', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -19071,12 +20832,12 @@ C3N-00177.miRNA-Seq.T C3N-00177 CCRCC miRNA-Seq tumor CPT0020120006 181012_UNC32 C3N-00177.miRNA-Seq.T.hg38 C3N-00177 CCRCC miRNA-Seq tumor CPT0020120006 a4f95d10-ded6-4d2e-98e0-432dad710060_mirnaseq_gdc_realn.bam 216231235 BAM harmonized CPTAC3 59f5e113-e0a5-469a-afa1-314dada0eff5 c9aa4b357f36c543f01f5b9489a5bafa { 'aliquot_tag': 'ALQ_21d7d40', 'gdc_sample_type': 'Primary Tumor' } C3N-00177.RNA-Seq.chimeric.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 024d8b88-476c-4fda-a343-9a1d0160ed19.rna_seq.chimeric.gdc_realn.bam 58809223 BAM chimeric harmonized CPTAC3 926ea5fa-13b4-4525-8773-bcf41f2fe889 f72b1aefe5804aa88752100957a22aa2 { 'aliquot_tag': 'ALQ_3f7d54f0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00177.RNA-Seq.chimeric.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 be916353-6343-4854-a34d-9fdce62bab9d.rna_seq.chimeric.gdc_realn.bam 134424434 BAM chimeric harmonized CPTAC3 ad83c349-9c6a-4e7c-8c6a-d0d5315bc8f2 b82eb859eee697e0e89916858d605c2b { 'aliquot_tag': 'ALQ_21d7d40', 'gdc_sample_type': 'Primary Tumor' } -C3N-00177.RNA-Seq.genomic.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 024d8b88-476c-4fda-a343-9a1d0160ed19.rna_seq.genomic.gdc_realn.bam 8882196611 BAM genomic harmonized CPTAC3 5fc2a84f-76fb-4368-88a3-36fff364fa78 8f642bf62981e48601f1fc5a6a967d6a { 'aliquot_tag': 'ALQ_3f7d54f0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00177.RNA-Seq.genomic.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 024d8b88-476c-4fda-a343-9a1d0160ed19.rna_seq.genomic.gdc_realn.bam 8882196611 BAM genomic harmonized CPTAC3 1a11501f-7b75-41da-8d1e-91eadc9be208 8f642bf62981e48601f1fc5a6a967d6a { 'aliquot_tag': 'ALQ_3f7d54f0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00177.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 be916353-6343-4854-a34d-9fdce62bab9d.rna_seq.genomic.gdc_realn.bam 9176824088 BAM genomic harmonized CPTAC3 9d66613e-7e7f-4b30-8f60-4f3b102e3d65 43100c00efe53a2c1bde326c7f05b8fd { 'aliquot_tag': 'ALQ_21d7d40', 'gdc_sample_type': 'Primary Tumor' } -C3N-00177.RNA-Seq.R1_L004.T C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L004_R1_001.fastq.gz 4263901863 FASTQ R1_L004 unaligned CPTAC3 b8a098a2-0c11-491d-bc3a-d3c21eb5a586 aa30adf9949628832c2942bd34000ad8 { 'aliquot_tag': 'ALQ_21d7d40', 'gdc_sample_type': 'Primary Tumor' } -C3N-00177.RNA-Seq.R1_L007.A C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L007_R1_001.fastq.gz 4582858913 FASTQ R1_L007 unaligned CPTAC3 1b370e43-38d6-41da-b8b2-06f202915f09 4b3d8c80cc152b166578368e85460058 { 'aliquot_tag': 'ALQ_3f7d54f0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00177.RNA-Seq.R2_L004.T C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L004_R2_001.fastq.gz 4692956854 FASTQ R2_L004 unaligned CPTAC3 de966bf1-639f-4af1-ac68-47e9ab1b9c34 e1ce0b46176c2b7c3691732897ebf8db { 'aliquot_tag': 'ALQ_21d7d40', 'gdc_sample_type': 'Primary Tumor' } -C3N-00177.RNA-Seq.R2_L007.A C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L007_R2_001.fastq.gz 4068186798 FASTQ R2_L007 unaligned CPTAC3 028bb703-224e-41ac-9eef-2733fa19b0e3 836443bb9c90e166cdfa34062771751f { 'aliquot_tag': 'ALQ_3f7d54f0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00177.RNA-Seq.R1_L004.T C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L004_R1_001.fastq.gz 4263901863 FASTQ R1_L004 unaligned CPTAC3 b8a098a2-0c11-491d-bc3a-d3c21eb5a586 aa30adf9949628832c2942bd34000ad8 { 'aliquot_tag': 'ALQ_21d7d40', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00177.RNA-Seq.R1_L007.A C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L007_R1_001.fastq.gz 4582858913 FASTQ R1_L007 unaligned CPTAC3 1b370e43-38d6-41da-b8b2-06f202915f09 4b3d8c80cc152b166578368e85460058 { 'aliquot_tag': 'ALQ_3f7d54f0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-00177.RNA-Seq.R2_L004.T C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L004_R2_001.fastq.gz 4692956854 FASTQ R2_L004 unaligned CPTAC3 de966bf1-639f-4af1-ac68-47e9ab1b9c34 e1ce0b46176c2b7c3691732897ebf8db { 'aliquot_tag': 'ALQ_21d7d40', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00177.RNA-Seq.R2_L007.A C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L007_R2_001.fastq.gz 4068186798 FASTQ R2_L007 unaligned CPTAC3 028bb703-224e-41ac-9eef-2733fa19b0e3 836443bb9c90e166cdfa34062771751f { 'aliquot_tag': 'ALQ_3f7d54f0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-00177.RNA-Seq.transcriptome.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal CPT0020130006 024d8b88-476c-4fda-a343-9a1d0160ed19.rna_seq.transcriptome.gdc_realn.bam 9806723955 BAM transcriptome harmonized CPTAC3 ef3fcb0f-45d7-4bfa-80f6-0d0afc8847fa 44253fd38fe1a683870ef2ecd2ad4863 { 'aliquot_tag': 'ALQ_3f7d54f0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00177.RNA-Seq.transcriptome.T.hg38 C3N-00177 CCRCC RNA-Seq tumor CPT0020120006 be916353-6343-4854-a34d-9fdce62bab9d.rna_seq.transcriptome.gdc_realn.bam 12345319975 BAM transcriptome harmonized CPTAC3 961dba90-cd21-4d8a-93bd-472a9f31c1be 25c7dc29c8d6cbc97eb9e6857843beb1 { 'aliquot_tag': 'ALQ_21d7d40', 'gdc_sample_type': 'Primary Tumor' } C3N-00177.WGS.A C3N-00177 CCRCC WGS tissue_normal CPT0020130009 CPT0020130009.WholeGenome.RP-1303.bam 60365621788 BAM aligned CPTAC3 479f7eae-73ed-4027-a4b9-1716cd0165d9 5c38539661170749cf9e31d1abcf3af1 { 'aliquot_tag': 'ALQ_afc24961', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19097,16 +20858,16 @@ C3N-00179.miRNA-Seq.A C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 181119_ C3N-00179.miRNA-Seq.A.hg38 C3N-00179 CM miRNA-Seq tissue_normal CPT0019960011 10b609f0-b6e9-40a9-9d11-9a20ebd1fbc4_mirnaseq_gdc_realn.bam 181050678 BAM harmonized CPTAC3 03eff811-0027-4e4d-b3d0-2666983fa6a9 3bfcf2c5eacbc0bf19c83ff7a5b767f8 { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00179.miRNA-Seq.T C3N-00179 CM miRNA-Seq tumor CPT0019940014 181012_UNC32-K00270_0124_AH223CBBXY_ACTGAT_S45_L005_R1_001.unaln.bam 184122693 BAM unaligned CPTAC3 9bdd17b5-d312-4dd8-90d2-6858d9bd999a e0eb85e3128bc004a7ce09a0e8f91bf5 { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor' } C3N-00179.miRNA-Seq.T.hg38 C3N-00179 CM miRNA-Seq tumor CPT0019940014 38590989-1eaf-4665-86c5-f1452536afb4_mirnaseq_gdc_realn.bam 192722490 BAM harmonized CPTAC3 e1935714-a35e-41f5-a5c1-2313ddc36543 58c45f3c6ebc494a741c186d19d9eb25 { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00179.RNA-Seq.chimeric.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 7b7a4cfe-8072-413b-afaf-042119975e72.rna_seq.chimeric.gdc_realn.bam 23581380 BAM chimeric harmonized CPTAC3 059650dc-2c18-463a-882e-a69263896340 2a5f77c00d39203e43c5b164e6607c49 { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00179.RNA-Seq.chimeric.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 0efd53f9-eec6-435c-a95f-f364363d2958.rna_seq.chimeric.gdc_realn.bam 77306467 BAM chimeric harmonized CPTAC3 a1c55709-b78f-4819-a783-d10ca8a7ec29 c0bfaf9ff136035a2437195962dc2f0c { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00179.RNA-Seq.genomic.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 7b7a4cfe-8072-413b-afaf-042119975e72.rna_seq.genomic.gdc_realn.bam 8125467675 BAM genomic harmonized CPTAC3 71b88fc4-4957-4071-af0a-44f2e61d0102 7c37ee811be4a4e1691f05bd57195885 { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00179.RNA-Seq.genomic.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 0efd53f9-eec6-435c-a95f-f364363d2958.rna_seq.genomic.gdc_realn.bam 8761069043 BAM genomic harmonized CPTAC3 517797c2-4dbd-411e-8521-14e24276b57d 88f77994325f5b75e961a30045767336 { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00179.RNA-Seq.R1_L006.A C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 180516_UNC31-K00269_0130_BHV22JBBXX_ATTCCT_S24_L006_R1_001.fastq.gz 3731834913 FASTQ R1_L006 unaligned CPTAC3 252cb045-94a6-4335-9d51-53610564f87c 8a2636e6b20b9ebbbca9a1cede428588 { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00179.RNA-Seq.R1_L007.T C3N-00179 CM RNA-Seq tumor CPT0019940014 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L007_R1_001.fastq.gz 4091212668 FASTQ R1_L007 unaligned CPTAC3 c69b3f60-5fb1-440d-9793-7ca8fd1dccff a958f73e3006372b66e8653ecd6748cc { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00179.RNA-Seq.R2_L006.A C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 180516_UNC31-K00269_0130_BHV22JBBXX_ATTCCT_S24_L006_R2_001.fastq.gz 4030516244 FASTQ R2_L006 unaligned CPTAC3 4e40b7c7-8513-430a-b4a4-5107c563fa1b db3d0a96083dfceb4e1b429b5aba916b { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00179.RNA-Seq.R2_L007.T C3N-00179 CM RNA-Seq tumor CPT0019940014 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L007_R2_001.fastq.gz 4188871815 FASTQ R2_L007 unaligned CPTAC3 7a07e79b-3f83-4cdf-9957-db1cfc0e4617 528c1a833a15207b4adef054b0199604 { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00179.RNA-Seq.transcriptome.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 7b7a4cfe-8072-413b-afaf-042119975e72.rna_seq.transcriptome.gdc_realn.bam 8871049363 BAM transcriptome harmonized CPTAC3 2f9d8318-426d-4f6a-badc-0b64aa7418ca b739ba10c17460b49d452c7f38465753 { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00179.RNA-Seq.transcriptome.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 0efd53f9-eec6-435c-a95f-f364363d2958.rna_seq.transcriptome.gdc_realn.bam 9033929193 BAM transcriptome harmonized CPTAC3 8d83b915-2379-4337-add8-42dd2c0089c5 a3b8d39e26f6af44a06eeee256c4eebc { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor' } +C3N-00179.RNA-Seq.chimeric.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.chimeric.gdc_realn.bam 23565563 BAM chimeric harmonized CPTAC3 c6e615d2-cccf-4c24-ae20-c5e4e4d2b0de 9ec4892fd2e95998731e792dd69deb41 { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00179.RNA-Seq.chimeric.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.chimeric.gdc_realn.bam 77306360 BAM chimeric harmonized CPTAC3 4831222a-44f0-4282-b596-95110837d8db 9fa202043a2489313338ffefd7bb163c { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor' } +C3N-00179.RNA-Seq.genomic.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.genomic.gdc_realn.bam 8126581405 BAM genomic harmonized CPTAC3 6fc3617f-7e62-4570-88b6-9fd0239737da 1c64ba20c29457a85cc3dc47123bfb72 { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00179.RNA-Seq.genomic.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.genomic.gdc_realn.bam 8761983609 BAM genomic harmonized CPTAC3 50bf43e6-c03a-40ee-8105-14a0356e7d1f 7eebc2308ecc247650581431e447248e { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor' } +C3N-00179.RNA-Seq.R1_L006.A C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 180516_UNC31-K00269_0130_BHV22JBBXX_ATTCCT_S24_L006_R1_001.fastq.gz 3731834913 FASTQ R1_L006 unaligned CPTAC3 252cb045-94a6-4335-9d51-53610564f87c 8a2636e6b20b9ebbbca9a1cede428588 { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00179.RNA-Seq.R1_L007.T C3N-00179 CM RNA-Seq tumor CPT0019940014 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L007_R1_001.fastq.gz 4091212668 FASTQ R1_L007 unaligned CPTAC3 c69b3f60-5fb1-440d-9793-7ca8fd1dccff a958f73e3006372b66e8653ecd6748cc { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00179.RNA-Seq.R2_L006.A C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 180516_UNC31-K00269_0130_BHV22JBBXX_ATTCCT_S24_L006_R2_001.fastq.gz 4030516244 FASTQ R2_L006 unaligned CPTAC3 4e40b7c7-8513-430a-b4a4-5107c563fa1b db3d0a96083dfceb4e1b429b5aba916b { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-00179.RNA-Seq.R2_L007.T C3N-00179 CM RNA-Seq tumor CPT0019940014 170818_UNC32-K00270_0051_BHLCCHBBXX_ATCACG_S20_L007_R2_001.fastq.gz 4188871815 FASTQ R2_L007 unaligned CPTAC3 7a07e79b-3f83-4cdf-9957-db1cfc0e4617 528c1a833a15207b4adef054b0199604 { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-00179.RNA-Seq.transcriptome.A.hg38 C3N-00179 CM RNA-Seq tissue_normal CPT0019960011 f70092d6-0784-4e4b-9b91-62a2534f69e6.rna_seq.transcriptome.gdc_realn.bam 10000521209 BAM transcriptome harmonized CPTAC3 696ff797-6b82-4148-b34c-480bf2cf80d5 31955f87b8168f6888fdfca01a0d20d6 { 'aliquot_tag': 'ALQ_87a6bf3f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00179.RNA-Seq.transcriptome.T.hg38 C3N-00179 CM RNA-Seq tumor CPT0019940014 90d43a1d-218b-446e-ba84-02058923dcf1.rna_seq.transcriptome.gdc_realn.bam 10282565582 BAM transcriptome harmonized CPTAC3 38cb58b2-712c-4ed0-b340-7276dae34b79 c26567a792dc99f981e256a83ed6ddfa { 'aliquot_tag': 'ALQ_8d0c18d0', 'gdc_sample_type': 'Primary Tumor' } C3N-00179.WGS.A C3N-00179 CM WGS tissue_normal CPT0019960007 CPT0019960007.WholeGenome.RP-1303.bam 61566329644 BAM aligned CPTAC3 1fe8e64c-8d3c-48e1-a965-8edf3c2c88aa 15b8263adcbdbcaef3893baf19294288 { 'aliquot_tag': 'ALQ_77de2b4b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00179.WGS.A.hg38 C3N-00179 CM WGS tissue_normal CPT0019960007 16f76fcb-0e0d-4c8a-848a-acd5ecae21f3_wgs_gdc_realn.bam 91277374316 BAM harmonized CPTAC3 a0a68865-2cdf-4e6d-85a6-3d89777f819c 5893c37738118cbc0393ec31f0533c65 { 'aliquot_tag': 'ALQ_77de2b4b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00179.WGS.N C3N-00179 CM WGS blood_normal CPT0020950002 CPT0020950002.WholeGenome.RP-1303.bam 79165727723 BAM aligned CPTAC3 6fb26724-5ad9-494c-95cd-72680f6b770b 0e72fdb0cd046e7887b1430479489ebc { 'aliquot_tag': 'ALQ_5b03e724', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19130,11 +20891,11 @@ C3N-00180.miRNA-Seq.T.hg38 C3N-00180 LUAD miRNA-Seq tumor CPT0066780009 96a4fabc C3N-00180.RNA-Seq.chimeric.A.hg38 C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 5b8f841b-0802-443d-81c4-ea3308afdd89.rna_seq.chimeric.gdc_realn.bam 94354821 BAM chimeric harmonized CPTAC3 2c8ec5c1-b5ce-4ac7-b4d2-c5cfb57c5830 6bc97c304802fdee1329b886e46d6134 { 'aliquot_tag': 'ALQ_85286d98', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00180.RNA-Seq.chimeric.T.hg38 C3N-00180 LUAD RNA-Seq tumor CPT0066780009 a3983036-2e23-478e-8018-566ce9e19955.rna_seq.chimeric.gdc_realn.bam 146594694 BAM chimeric harmonized CPTAC3 c0c05314-aab4-4c34-8545-91acce991d84 b1d8e0e0525d2ce086f941c5dc6d2aa2 { 'aliquot_tag': 'ALQ_e9d1a0ad', 'gdc_sample_type': 'Primary Tumor' } C3N-00180.RNA-Seq.genomic.A.hg38 C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 5b8f841b-0802-443d-81c4-ea3308afdd89.rna_seq.genomic.gdc_realn.bam 8586873881 BAM genomic harmonized CPTAC3 3f71b12a-76ed-462a-8c8f-bca3fe1682cf b512c28cbed1972d5c3793b6b1fdfbd2 { 'aliquot_tag': 'ALQ_85286d98', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00180.RNA-Seq.genomic.T.hg38 C3N-00180 LUAD RNA-Seq tumor CPT0066780009 a3983036-2e23-478e-8018-566ce9e19955.rna_seq.genomic.gdc_realn.bam 9161603634 BAM genomic harmonized CPTAC3 09b0d30a-9f1d-4a53-946e-c668a42356a8 1bdade32f90ad412b22ba6cae6d8ce1b { 'aliquot_tag': 'ALQ_e9d1a0ad', 'gdc_sample_type': 'Primary Tumor' } -C3N-00180.RNA-Seq.R1_L008.A C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 180103_UNC31-K00269_0105_AHNFGGBBXX_ATGTCA_S79_L008_R1_001.fastq.gz 4098210486 FASTQ R1_L008 unaligned CPTAC3 3889683a-03a1-47b7-9fb1-99e116f77cad 22dee24b417f9b50d2c05a7434c074ca { 'aliquot_tag': 'ALQ_85286d98', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00180.RNA-Seq.R1_L008.T C3N-00180 LUAD RNA-Seq tumor CPT0066780009 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L008_R1_001.fastq.gz 4282379536 FASTQ R1_L008 unaligned CPTAC3 0f723218-122e-4166-8736-718d17daaa5f d08de05e3c8e68d41446baf042852f7c { 'aliquot_tag': 'ALQ_e9d1a0ad', 'gdc_sample_type': 'Primary Tumor' } -C3N-00180.RNA-Seq.R2_L008.A C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 180103_UNC31-K00269_0105_AHNFGGBBXX_ATGTCA_S79_L008_R2_001.fastq.gz 4442419919 FASTQ R2_L008 unaligned CPTAC3 cc5ab0c7-f4a7-4561-96d4-b526e678a2f5 3ec9a082c0a163f61dd49a85e7a4826b { 'aliquot_tag': 'ALQ_85286d98', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00180.RNA-Seq.R2_L008.T C3N-00180 LUAD RNA-Seq tumor CPT0066780009 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L008_R2_001.fastq.gz 4513843874 FASTQ R2_L008 unaligned CPTAC3 1d1a0d32-fefd-4f8a-9d35-31734b685d02 1e203f8b51264e9dd5c0e8a442664091 { 'aliquot_tag': 'ALQ_e9d1a0ad', 'gdc_sample_type': 'Primary Tumor' } +C3N-00180.RNA-Seq.genomic.T.hg38 C3N-00180 LUAD RNA-Seq tumor CPT0066780009 a3983036-2e23-478e-8018-566ce9e19955.rna_seq.genomic.gdc_realn.bam 9161603634 BAM genomic harmonized CPTAC3 7890ceda-6b90-41f4-ae51-0a63ba42aa49 1bdade32f90ad412b22ba6cae6d8ce1b { 'aliquot_tag': 'ALQ_e9d1a0ad', 'gdc_sample_type': 'Primary Tumor' } +C3N-00180.RNA-Seq.R1_L008.A C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 180103_UNC31-K00269_0105_AHNFGGBBXX_ATGTCA_S79_L008_R1_001.fastq.gz 4098210486 FASTQ R1_L008 unaligned CPTAC3 3889683a-03a1-47b7-9fb1-99e116f77cad 22dee24b417f9b50d2c05a7434c074ca { 'aliquot_tag': 'ALQ_85286d98', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00180.RNA-Seq.R1_L008.T C3N-00180 LUAD RNA-Seq tumor CPT0066780009 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L008_R1_001.fastq.gz 4282379536 FASTQ R1_L008 unaligned CPTAC3 0f723218-122e-4166-8736-718d17daaa5f d08de05e3c8e68d41446baf042852f7c { 'aliquot_tag': 'ALQ_e9d1a0ad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00180.RNA-Seq.R2_L008.A C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 180103_UNC31-K00269_0105_AHNFGGBBXX_ATGTCA_S79_L008_R2_001.fastq.gz 4442419919 FASTQ R2_L008 unaligned CPTAC3 cc5ab0c7-f4a7-4561-96d4-b526e678a2f5 3ec9a082c0a163f61dd49a85e7a4826b { 'aliquot_tag': 'ALQ_85286d98', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00180.RNA-Seq.R2_L008.T C3N-00180 LUAD RNA-Seq tumor CPT0066780009 170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L008_R2_001.fastq.gz 4513843874 FASTQ R2_L008 unaligned CPTAC3 1d1a0d32-fefd-4f8a-9d35-31734b685d02 1e203f8b51264e9dd5c0e8a442664091 { 'aliquot_tag': 'ALQ_e9d1a0ad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00180.RNA-Seq.transcriptome.A.hg38 C3N-00180 LUAD RNA-Seq tissue_normal CPT0066810006 5b8f841b-0802-443d-81c4-ea3308afdd89.rna_seq.transcriptome.gdc_realn.bam 10352549175 BAM transcriptome harmonized CPTAC3 eec2e93b-0ba6-4693-b52a-018d8388b3ae 9a0235beabe57f05d7a7c7f6e1c5d3fa { 'aliquot_tag': 'ALQ_85286d98', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00180.RNA-Seq.transcriptome.T.hg38 C3N-00180 LUAD RNA-Seq tumor CPT0066780009 a3983036-2e23-478e-8018-566ce9e19955.rna_seq.transcriptome.gdc_realn.bam 9491639798 BAM transcriptome harmonized CPTAC3 3fb5cb62-25d3-4864-95a9-1e62f05e71b6 2657bd387c0f5cc052a161116b6d84c0 { 'aliquot_tag': 'ALQ_e9d1a0ad', 'gdc_sample_type': 'Primary Tumor' } C3N-00180.Targeted.T C3N-00180 LUAD Targeted Sequencing tumor CPT0066780006 CPT0066780006.CustomSelection.RP-1303.PDO-18786.bam 5054326496 BAM aligned CPTAC3 2cc82403-f9b0-4bc2-a498-a3d9e3234b99 ea019aceb3e0d6d41952e9ae51971e2b { 'aliquot_tag': 'ALQ_796ebd3c', 'gdc_sample_type': 'Primary Tumor' } @@ -19160,9 +20921,9 @@ C3N-00194.DUP_2b767750.WXS.T.hg38 C3N-00194 CCRCC WXS tumor CPT0014180016 dcd9f7 C3N-00194.DUP_a38c476e.miRNA-Seq.T C3N-00194 CCRCC miRNA-Seq tumor CPT0014150013 200526_UNC32-K00270_0248_BHH7WFBBXY_CTCAGA_S11_L001_R1_001.unaln.bam 354369445 BAM unaligned CPTAC3 5eaf89e1-2e7b-4cf2-8f16-86186018e889 9c977deba896873cff52479e06550e6f { 'aliquot_tag': 'DUP_a38c476e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00194.DUP_a38c476e.miRNA-Seq.T.hg38 C3N-00194 CCRCC miRNA-Seq tumor CPT0014150013 ba864e1e-dc27-4fe6-b7ca-cbf0ef542db1_mirnaseq_gdc_realn.bam 376906707 BAM harmonized CPTAC3 93f00502-6756-4d3f-ada9-17294cf63cc3 8ec602c1e4e90c2d8de90fe3a4a9f4c6 { 'aliquot_tag': 'DUP_a38c476e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00194.DUP_a38c476e.RNA-Seq.chimeric.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 fef5bbfe-a089-4523-830b-1692c16eb67b.rna_seq.chimeric.gdc_realn.bam 58196191 BAM chimeric harmonized CPTAC3 6bacf4d1-e885-470e-8b37-36fb1f06893d 0c3db30159581d63fa7753549427a774 { 'aliquot_tag': 'DUP_a38c476e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00194.DUP_a38c476e.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 fef5bbfe-a089-4523-830b-1692c16eb67b.rna_seq.genomic.gdc_realn.bam 8437030499 BAM genomic harmonized CPTAC3 b8a172b0-6e21-44dc-ae22-397708232312 ee6809fbf44208049e67d6837962fec4 { 'aliquot_tag': 'DUP_a38c476e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00194.DUP_a38c476e.RNA-Seq.R1_L008.T C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R1_001.fastq.gz 3845736661 FASTQ R1_L008 unaligned CPTAC3 30ae7b78-98bd-4813-b118-7ad3f4c08b1d d8723e8d230e655382db9eafc4b59cd3 { 'aliquot_tag': 'DUP_a38c476e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00194.DUP_a38c476e.RNA-Seq.R2_L008.T C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R2_001.fastq.gz 4609898999 FASTQ R2_L008 unaligned CPTAC3 0e6a7015-d66e-41e9-8a38-844916f4d874 8b121813351d4a1d8292e9ce8d3aee8d { 'aliquot_tag': 'DUP_a38c476e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00194.DUP_a38c476e.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 fef5bbfe-a089-4523-830b-1692c16eb67b.rna_seq.genomic.gdc_realn.bam 8437030499 BAM genomic harmonized CPTAC3 18ecc38c-97aa-4702-8584-be73cbdd4fd8 ee6809fbf44208049e67d6837962fec4 { 'aliquot_tag': 'DUP_a38c476e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00194.DUP_a38c476e.RNA-Seq.R1_L008.T C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R1_001.fastq.gz 3845736661 FASTQ R1_L008 unaligned CPTAC3 30ae7b78-98bd-4813-b118-7ad3f4c08b1d d8723e8d230e655382db9eafc4b59cd3 { 'aliquot_tag': 'DUP_a38c476e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3N-00194.DUP_a38c476e.RNA-Seq.R2_L008.T C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R2_001.fastq.gz 4609898999 FASTQ R2_L008 unaligned CPTAC3 0e6a7015-d66e-41e9-8a38-844916f4d874 8b121813351d4a1d8292e9ce8d3aee8d { 'aliquot_tag': 'DUP_a38c476e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3N-00194.DUP_a38c476e.RNA-Seq.transcriptome.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014150013 fef5bbfe-a089-4523-830b-1692c16eb67b.rna_seq.transcriptome.gdc_realn.bam 11509493454 BAM transcriptome harmonized CPTAC3 8e0ffa33-5e55-4d8d-8797-628000f29ad5 79579fdf3c48765461f25486b4d7ca7d { 'aliquot_tag': 'DUP_a38c476e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00194.DUP_cafd82a0.MethArray.Green.T C3N-00194 CCRCC Methylation Array tumor CPT0014150006 204367490057_R05C01_Grn.idat 13677905 IDAT Green NA CPTAC3 04b547a0-8925-41bd-90a2-c03fed68b079 c480050cb219a4b6de2772be1ae2e388 { 'aliquot_tag': 'DUP_cafd82a0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00194.DUP_cafd82a0.MethArray.Red.T C3N-00194 CCRCC Methylation Array tumor CPT0014150006 204367490057_R05C01_Red.idat 13677905 IDAT Red NA CPTAC3 6398a66e-11da-411f-9ba1-ab5d587d9dc7 8e2c4780c2e3a2f199ece6c0fc4e1b75 { 'aliquot_tag': 'DUP_cafd82a0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -19173,9 +20934,9 @@ C3N-00194.DUP_cafd82a0.WXS.T.hg38 C3N-00194 CCRCC WXS tumor CPT0014150006 925f39 C3N-00194.DUP_ccce5a57.miRNA-Seq.T C3N-00194 CCRCC miRNA-Seq tumor CPT0014180018 201209_UNC32-K00270_0265_AHJ55WBBXY_TCATTC_S18_L006_R1_001.unaln.bam 190736084 BAM unaligned CPTAC3 f8776aaf-407b-4b4a-ba44-35f10f241a89 1e84349ac8152ad6f183081c361b5855 { 'aliquot_tag': 'DUP_ccce5a57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00194.DUP_ccce5a57.miRNA-Seq.T.hg38 C3N-00194 CCRCC miRNA-Seq tumor CPT0014180018 d6badd14-6dc7-49a5-ac1a-7b70c1e7b059_mirnaseq_gdc_realn.bam 207660767 BAM harmonized CPTAC3 d3141102-ff98-4c15-99eb-664eb2c3cd3d c020698d08be64b46aed9bd4b6cf8590 { 'aliquot_tag': 'DUP_ccce5a57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00194.DUP_ccce5a57.RNA-Seq.chimeric.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 eac21e24-7590-45ae-8d02-418e946f5fa2.rna_seq.chimeric.gdc_realn.bam 56794376 BAM chimeric harmonized CPTAC3 a166bfc3-66a9-47bd-be83-0bbb748cb476 19ec7ae64570ec995994ab1b37def7c0 { 'aliquot_tag': 'DUP_ccce5a57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00194.DUP_ccce5a57.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 eac21e24-7590-45ae-8d02-418e946f5fa2.rna_seq.genomic.gdc_realn.bam 7486322740 BAM genomic harmonized CPTAC3 ea544c1a-6179-4c83-ad25-2561a6f26647 343290f10751efa6ea8eb1202b96eb30 { 'aliquot_tag': 'DUP_ccce5a57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00194.DUP_ccce5a57.RNA-Seq.R1_L005.T C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R1_001.fastq.gz 3591666060 FASTQ R1_L005 unaligned CPTAC3 060a52e5-6ab1-4d99-b8b0-673ef07e6fcc 70fa5cd284f6c3e1a955ff9a5da34bf3 { 'aliquot_tag': 'DUP_ccce5a57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00194.DUP_ccce5a57.RNA-Seq.R2_L005.T C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R2_001.fastq.gz 4153593395 FASTQ R2_L005 unaligned CPTAC3 799cae3c-ac8c-4fd6-aa65-826a415e4fe2 30986e28625a9f4dc63e361a7d6eacba { 'aliquot_tag': 'DUP_ccce5a57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00194.DUP_ccce5a57.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 eac21e24-7590-45ae-8d02-418e946f5fa2.rna_seq.genomic.gdc_realn.bam 7486322740 BAM genomic harmonized CPTAC3 59b9b555-a334-4022-9d49-45f2bef49b08 343290f10751efa6ea8eb1202b96eb30 { 'aliquot_tag': 'DUP_ccce5a57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00194.DUP_ccce5a57.RNA-Seq.R1_L005.T C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R1_001.fastq.gz 3591666060 FASTQ R1_L005 unaligned CPTAC3 060a52e5-6ab1-4d99-b8b0-673ef07e6fcc 70fa5cd284f6c3e1a955ff9a5da34bf3 { 'aliquot_tag': 'DUP_ccce5a57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3N-00194.DUP_ccce5a57.RNA-Seq.R2_L005.T C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R2_001.fastq.gz 4153593395 FASTQ R2_L005 unaligned CPTAC3 799cae3c-ac8c-4fd6-aa65-826a415e4fe2 30986e28625a9f4dc63e361a7d6eacba { 'aliquot_tag': 'DUP_ccce5a57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3N-00194.DUP_ccce5a57.RNA-Seq.transcriptome.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014180018 eac21e24-7590-45ae-8d02-418e946f5fa2.rna_seq.transcriptome.gdc_realn.bam 10968856577 BAM transcriptome harmonized CPTAC3 b8061828-597b-4b4f-a0f2-9636d6ab69bd 4d7d9cafe6b5c89867b7ea037c88c40c { 'aliquot_tag': 'DUP_ccce5a57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00194.MethArray.Green.A C3N-00194 CCRCC Methylation Array tissue_normal CPT0014130009 204930640023_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 dcc4f6ae-71bd-4c14-a008-0c1e5a0f74a4 e2c3df44c127eb99cbac51c621c7f9f7 { 'aliquot_tag': 'ALQ_d5026a91', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00194.MethArray.Green.T C3N-00194 CCRCC Methylation Array tumor CPT0014160006 202178770109_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 c85167c7-7804-42de-926e-fb8b99657e3e 8cf0fee3df5125285d58cd7a07b794d0 { 'aliquot_tag': 'ALQ_8d5df870', 'gdc_sample_type': 'Primary Tumor' } @@ -19187,12 +20948,12 @@ C3N-00194.miRNA-Seq.T C3N-00194 CCRCC miRNA-Seq tumor CPT0014160009 181113_UNC31 C3N-00194.miRNA-Seq.T.hg38 C3N-00194 CCRCC miRNA-Seq tumor CPT0014160009 33861799-9692-4d43-9fae-7ff2e5d11ed8_mirnaseq_gdc_realn.bam 233524765 BAM harmonized CPTAC3 352e0e22-61ef-4f75-986f-99fd75f39271 cf34e1c71c50f016f78bdc5a96647c6d { 'aliquot_tag': 'ALQ_1de2e5e1', 'gdc_sample_type': 'Primary Tumor' } C3N-00194.RNA-Seq.chimeric.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 3245c320-8e71-460b-a3a3-7eb0c37f42a8.rna_seq.chimeric.gdc_realn.bam 85161955 BAM chimeric harmonized CPTAC3 f0e81c32-12f0-47c6-b2fb-cff6ce934704 b8f02d863b8405c251a4e172d05616da { 'aliquot_tag': 'ALQ_45bd7700', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00194.RNA-Seq.chimeric.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 b4c96abe-0460-4931-a999-d48312330368.rna_seq.chimeric.gdc_realn.bam 159909236 BAM chimeric harmonized CPTAC3 505b5e92-f384-4f8c-a540-e9be8a664132 c9f74c4f873d3b96860a4ebf4ff21f4b { 'aliquot_tag': 'ALQ_1de2e5e1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00194.RNA-Seq.genomic.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 3245c320-8e71-460b-a3a3-7eb0c37f42a8.rna_seq.genomic.gdc_realn.bam 7479199248 BAM genomic harmonized CPTAC3 32804fdb-d795-4ebe-8b81-3ecfaa94fb34 918fc04a659fb1c1a443b8c60023a3db { 'aliquot_tag': 'ALQ_45bd7700', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00194.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 b4c96abe-0460-4931-a999-d48312330368.rna_seq.genomic.gdc_realn.bam 7752622434 BAM genomic harmonized CPTAC3 57417daf-d7fb-4783-8725-ced7bf015f6f 948e689b8e2b938e274d0bda2ce802ca { 'aliquot_tag': 'ALQ_1de2e5e1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00194.RNA-Seq.R1_L006.A C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACTTGA_S51_L006_R1_001.fastq.gz 3773427215 FASTQ R1_L006 unaligned CPTAC3 f731dbe4-b17a-4ea3-86b9-b59a81e70774 f7c49539016ff9e494924301aa65eef1 { 'aliquot_tag': 'ALQ_45bd7700', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00194.RNA-Seq.R1_L007.T C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R1_001.fastq.gz 4083620064 FASTQ R1_L007 unaligned CPTAC3 43a866e7-11b6-48b3-81c2-377c378f1dba 0c9011d4f88db599d727b2652391cd0e { 'aliquot_tag': 'ALQ_1de2e5e1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00194.RNA-Seq.R2_L006.A C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACTTGA_S51_L006_R2_001.fastq.gz 4015911822 FASTQ R2_L006 unaligned CPTAC3 2c87c0be-8651-48c6-bf47-58d04431df4b 1058cff1ec557ccdefede33c4a7a80b7 { 'aliquot_tag': 'ALQ_45bd7700', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00194.RNA-Seq.R2_L007.T C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R2_001.fastq.gz 4432478207 FASTQ R2_L007 unaligned CPTAC3 293d2b6b-a6dd-4849-a306-3bdb55eb8c9f 5d26b582e6be2019e4fe785476665e6c { 'aliquot_tag': 'ALQ_1de2e5e1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00194.RNA-Seq.genomic.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 3245c320-8e71-460b-a3a3-7eb0c37f42a8.rna_seq.genomic.gdc_realn.bam 7479199248 BAM genomic harmonized CPTAC3 0c62d8d1-9fd9-4900-8fe5-abf344e79cf6 918fc04a659fb1c1a443b8c60023a3db { 'aliquot_tag': 'ALQ_45bd7700', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00194.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 b4c96abe-0460-4931-a999-d48312330368.rna_seq.genomic.gdc_realn.bam 7752622434 BAM genomic harmonized CPTAC3 3a9bf6a4-87af-4b89-925a-61c2938f40dd 948e689b8e2b938e274d0bda2ce802ca { 'aliquot_tag': 'ALQ_1de2e5e1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00194.RNA-Seq.R1_L006.A C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACTTGA_S51_L006_R1_001.fastq.gz 3773427215 FASTQ R1_L006 unaligned CPTAC3 f731dbe4-b17a-4ea3-86b9-b59a81e70774 f7c49539016ff9e494924301aa65eef1 { 'aliquot_tag': 'ALQ_45bd7700', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00194.RNA-Seq.R1_L007.T C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R1_001.fastq.gz 4083620064 FASTQ R1_L007 unaligned CPTAC3 43a866e7-11b6-48b3-81c2-377c378f1dba 0c9011d4f88db599d727b2652391cd0e { 'aliquot_tag': 'ALQ_1de2e5e1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00194.RNA-Seq.R2_L006.A C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACTTGA_S51_L006_R2_001.fastq.gz 4015911822 FASTQ R2_L006 unaligned CPTAC3 2c87c0be-8651-48c6-bf47-58d04431df4b 1058cff1ec557ccdefede33c4a7a80b7 { 'aliquot_tag': 'ALQ_45bd7700', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-00194.RNA-Seq.R2_L007.T C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R2_001.fastq.gz 4432478207 FASTQ R2_L007 unaligned CPTAC3 293d2b6b-a6dd-4849-a306-3bdb55eb8c9f 5d26b582e6be2019e4fe785476665e6c { 'aliquot_tag': 'ALQ_1de2e5e1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00194.RNA-Seq.transcriptome.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal CPT0014130006 3245c320-8e71-460b-a3a3-7eb0c37f42a8.rna_seq.transcriptome.gdc_realn.bam 9017298404 BAM transcriptome harmonized CPTAC3 fdf524a7-a6d7-49fc-8955-d84b5994ebea 03893b7c3f3ead55dc9d6e024affab72 { 'aliquot_tag': 'ALQ_45bd7700', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00194.RNA-Seq.transcriptome.T.hg38 C3N-00194 CCRCC RNA-Seq tumor CPT0014160009 b4c96abe-0460-4931-a999-d48312330368.rna_seq.transcriptome.gdc_realn.bam 10896942595 BAM transcriptome harmonized CPTAC3 496faa9f-9fe0-4da8-b71f-884a0ad9955b 9eee2c58b6522bd0aef98037c6fb85e4 { 'aliquot_tag': 'ALQ_1de2e5e1', 'gdc_sample_type': 'Primary Tumor' } C3N-00194.WGS.A C3N-00194 CCRCC WGS tissue_normal CPT0014130009 CPT0014130009.WholeGenome.RP-1303.bam 60741633084 BAM aligned CPTAC3 47d90595-b4f4-421e-bf93-df9aa1287a20 fe8fd7ee37a830093ef7575ab7b3a317 { 'aliquot_tag': 'ALQ_d5026a91', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19217,12 +20978,12 @@ C3N-00198.miRNA-Seq.T C3N-00198 PDA miRNA-Seq tumor CPT0014040009 181012_UNC32-K C3N-00198.miRNA-Seq.T.hg38 C3N-00198 PDA miRNA-Seq tumor CPT0014040009 5b4078bd-967e-4815-a12b-63c52731ac79_mirnaseq_gdc_realn.bam 306024194 BAM harmonized CPTAC3 84845c5b-6901-488a-a67f-1d260a6506ca 5e60aa8a7aaea487c82f5f5ee34d8564 { 'aliquot_tag': 'ALQ_ac7e6524', 'gdc_sample_type': 'Primary Tumor' } C3N-00198.RNA-Seq.chimeric.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 3af9a093-822b-44af-9877-095a2c1cf67a.rna_seq.chimeric.gdc_realn.bam 38894982 BAM chimeric harmonized CPTAC3 3383b839-62e9-4605-a218-e7e91bd27b84 1d1e403502ba39a7a8752484e2bb6aae { 'aliquot_tag': 'ALQ_d6be3644', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00198.RNA-Seq.chimeric.T.hg38 C3N-00198 PDA RNA-Seq tumor CPT0014040009 bfce5eea-c476-4dad-b139-2bd93bb043d3.rna_seq.chimeric.gdc_realn.bam 116852002 BAM chimeric harmonized CPTAC3 a97a08f8-6aac-44ff-a199-053278d61aeb 9862691f8c4c6cf89677c9e65f375cf9 { 'aliquot_tag': 'ALQ_ac7e6524', 'gdc_sample_type': 'Primary Tumor' } -C3N-00198.RNA-Seq.genomic.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 3af9a093-822b-44af-9877-095a2c1cf67a.rna_seq.genomic.gdc_realn.bam 10759922678 BAM genomic harmonized CPTAC3 74d38e0e-0ea1-4a11-94b6-4a5d3c111486 11748f12119279bc90cc3c37a71d37e5 { 'aliquot_tag': 'ALQ_d6be3644', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00198.RNA-Seq.genomic.T.hg38 C3N-00198 PDA RNA-Seq tumor CPT0014040009 bfce5eea-c476-4dad-b139-2bd93bb043d3.rna_seq.genomic.gdc_realn.bam 8923926457 BAM genomic harmonized CPTAC3 ea5746c5-da93-41a9-b9db-d2658525deb3 eb9a57cab00e7f8d53c95ff360883ffe { 'aliquot_tag': 'ALQ_ac7e6524', 'gdc_sample_type': 'Primary Tumor' } -C3N-00198.RNA-Seq.R1_L007.T C3N-00198 PDA RNA-Seq tumor CPT0014040009 170818_UNC32-K00270_0050_AHL2FHBBXX_ACAGTG_S17_L007_R1_001.fastq.gz 4070882648 FASTQ R1_L007 unaligned CPTAC3 9521ce65-a4f8-4dd2-8405-25181cab3d40 21fac064778862138f3ded6ee1e426fd { 'aliquot_tag': 'ALQ_ac7e6524', 'gdc_sample_type': 'Primary Tumor' } -C3N-00198.RNA-Seq.R1_L008.A C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GCCAAT_S29_L008_R1_001.fastq.gz 4316890587 FASTQ R1_L008 unaligned CPTAC3 38c25f0d-fa3f-4f7d-816c-f6cb65bff37b e7c1fbde50c6d4a550c2f65b92f8d462 { 'aliquot_tag': 'ALQ_d6be3644', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00198.RNA-Seq.R2_L007.T C3N-00198 PDA RNA-Seq tumor CPT0014040009 170818_UNC32-K00270_0050_AHL2FHBBXX_ACAGTG_S17_L007_R2_001.fastq.gz 4421631940 FASTQ R2_L007 unaligned CPTAC3 6bb2e112-a57e-4ba1-bb77-bec322b1c6c5 6dfbaca9ed2a53f37e2ce40c2771afd7 { 'aliquot_tag': 'ALQ_ac7e6524', 'gdc_sample_type': 'Primary Tumor' } -C3N-00198.RNA-Seq.R2_L008.A C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GCCAAT_S29_L008_R2_001.fastq.gz 4735227665 FASTQ R2_L008 unaligned CPTAC3 c9d12862-a12d-41fc-b8bb-b6aba3457c35 84ceb3250947ca466b885ce81988eb4d { 'aliquot_tag': 'ALQ_d6be3644', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00198.RNA-Seq.genomic.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 3af9a093-822b-44af-9877-095a2c1cf67a.rna_seq.genomic.gdc_realn.bam 10759922678 BAM genomic harmonized CPTAC3 448ebc6f-984f-4676-a4fe-7590b932a4ab 11748f12119279bc90cc3c37a71d37e5 { 'aliquot_tag': 'ALQ_d6be3644', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00198.RNA-Seq.genomic.T.hg38 C3N-00198 PDA RNA-Seq tumor CPT0014040009 bfce5eea-c476-4dad-b139-2bd93bb043d3.rna_seq.genomic.gdc_realn.bam 8923926457 BAM genomic harmonized CPTAC3 17d2de80-f7a2-4eb6-8106-b55cb11d8dae eb9a57cab00e7f8d53c95ff360883ffe { 'aliquot_tag': 'ALQ_ac7e6524', 'gdc_sample_type': 'Primary Tumor' } +C3N-00198.RNA-Seq.R1_L007.T C3N-00198 PDA RNA-Seq tumor CPT0014040009 170818_UNC32-K00270_0050_AHL2FHBBXX_ACAGTG_S17_L007_R1_001.fastq.gz 4070882648 FASTQ R1_L007 unaligned CPTAC3 9521ce65-a4f8-4dd2-8405-25181cab3d40 21fac064778862138f3ded6ee1e426fd { 'aliquot_tag': 'ALQ_ac7e6524', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00198.RNA-Seq.R1_L008.A C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GCCAAT_S29_L008_R1_001.fastq.gz 4316890587 FASTQ R1_L008 unaligned CPTAC3 38c25f0d-fa3f-4f7d-816c-f6cb65bff37b e7c1fbde50c6d4a550c2f65b92f8d462 { 'aliquot_tag': 'ALQ_d6be3644', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00198.RNA-Seq.R2_L007.T C3N-00198 PDA RNA-Seq tumor CPT0014040009 170818_UNC32-K00270_0050_AHL2FHBBXX_ACAGTG_S17_L007_R2_001.fastq.gz 4421631940 FASTQ R2_L007 unaligned CPTAC3 6bb2e112-a57e-4ba1-bb77-bec322b1c6c5 6dfbaca9ed2a53f37e2ce40c2771afd7 { 'aliquot_tag': 'ALQ_ac7e6524', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-00198.RNA-Seq.R2_L008.A C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 180606_UNC32-K00270_0097_AHVCKFBBXX_GCCAAT_S29_L008_R2_001.fastq.gz 4735227665 FASTQ R2_L008 unaligned CPTAC3 c9d12862-a12d-41fc-b8bb-b6aba3457c35 84ceb3250947ca466b885ce81988eb4d { 'aliquot_tag': 'ALQ_d6be3644', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00198.RNA-Seq.transcriptome.A.hg38 C3N-00198 PDA RNA-Seq tissue_normal CPT0014060009 3af9a093-822b-44af-9877-095a2c1cf67a.rna_seq.transcriptome.gdc_realn.bam 10598334840 BAM transcriptome harmonized CPTAC3 440018d4-0aa9-40bb-9fc9-d013b6ca17da dfe0186876a457cdb9e847168f911669 { 'aliquot_tag': 'ALQ_d6be3644', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00198.RNA-Seq.transcriptome.T.hg38 C3N-00198 PDA RNA-Seq tumor CPT0014040009 bfce5eea-c476-4dad-b139-2bd93bb043d3.rna_seq.transcriptome.gdc_realn.bam 10490493547 BAM transcriptome harmonized CPTAC3 b15c3d50-e189-40be-b2af-edf983fe9ee0 488e8fb2a6b191e9cd9ae944d075480c { 'aliquot_tag': 'ALQ_ac7e6524', 'gdc_sample_type': 'Primary Tumor' } C3N-00198.Targeted.T C3N-00198 PDA Targeted Sequencing tumor CPT0014040006_1 CPT0014040006_1.CustomSelection.RP-1303.PDO-18786.bam 3574211891 BAM aligned CPTAC3 074fd44b-5177-40fd-b5b1-93503afa6b7d 9eb80c2c462820d75d639017af0b1499 { 'aliquot_tag': 'ALQ_ea48cc6c', 'gdc_sample_type': 'Primary Tumor' } @@ -19243,12 +21004,12 @@ C3N-00199.miRNA-Seq.T C3N-00199 LUAD miRNA-Seq tumor CPT0014260009 181012_UNC32- C3N-00199.miRNA-Seq.T.hg38 C3N-00199 LUAD miRNA-Seq tumor CPT0014260009 94f04539-d4d9-4d12-ab64-de6382b959ee_mirnaseq_gdc_realn.bam 205537349 BAM harmonized CPTAC3 dbd079ea-0916-4694-b323-25a3c8afb335 cc3abc20aa1a436e95e3bdc6627b1132 { 'aliquot_tag': 'ALQ_9b76974f', 'gdc_sample_type': 'Primary Tumor' } C3N-00199.RNA-Seq.chimeric.A.hg38 C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 6fb0db27-feb4-40c4-b8a0-7b53deddd97d.rna_seq.chimeric.gdc_realn.bam 123431101 BAM chimeric harmonized CPTAC3 542f15f4-db6e-4eb0-bfa7-cf8317c5c9c4 96124b884f8063dc8388e167590e99ad { 'aliquot_tag': 'ALQ_89991d0f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00199.RNA-Seq.chimeric.T.hg38 C3N-00199 LUAD RNA-Seq tumor CPT0014260009 7a6037ab-a49f-4469-8ec4-f6ff52a6e59a.rna_seq.chimeric.gdc_realn.bam 145538000 BAM chimeric harmonized CPTAC3 c3bd90d1-3611-4612-8519-e2e3a3df2efd 3260896dcbe1428013cb62a527ea33ba { 'aliquot_tag': 'ALQ_9b76974f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00199.RNA-Seq.genomic.A.hg38 C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 6fb0db27-feb4-40c4-b8a0-7b53deddd97d.rna_seq.genomic.gdc_realn.bam 7142423942 BAM genomic harmonized CPTAC3 0c0f4bf9-075e-4c0c-a7e3-d97c1bdd333a 18790d5c84abbaed7d4910ff289e096e { 'aliquot_tag': 'ALQ_89991d0f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00199.RNA-Seq.genomic.T.hg38 C3N-00199 LUAD RNA-Seq tumor CPT0014260009 7a6037ab-a49f-4469-8ec4-f6ff52a6e59a.rna_seq.genomic.gdc_realn.bam 7765550740 BAM genomic harmonized CPTAC3 47228614-7c3a-46ac-8499-66dc69f3a00e 91489c8222569c13f38d38fd0fc0af92 { 'aliquot_tag': 'ALQ_9b76974f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00199.RNA-Seq.R1_L002.A C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L002_R1_001.fastq.gz 3337555304 FASTQ R1_L002 unaligned CPTAC3 cc616a5c-2e83-4128-a777-a4b64d98b8a5 33e3b6b28d4a4af0e7efc7161b5454da { 'aliquot_tag': 'ALQ_89991d0f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00199.RNA-Seq.R1_L007.T C3N-00199 LUAD RNA-Seq tumor CPT0014260009 170818_UNC32-K00270_0050_AHL2FHBBXX_CAGATC_S19_L007_R1_001.fastq.gz 3822441410 FASTQ R1_L007 unaligned CPTAC3 0f457298-17f9-479a-b9f8-94752080825d 7354b54c4165b9c66ef64ffce2e1bb3a { 'aliquot_tag': 'ALQ_9b76974f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00199.RNA-Seq.R2_L002.A C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L002_R2_001.fastq.gz 3632090303 FASTQ R2_L002 unaligned CPTAC3 5c4657a3-2bbb-41c4-a849-c35f88650bef 9ad488f920b68c63f15df210a652a0a1 { 'aliquot_tag': 'ALQ_89991d0f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00199.RNA-Seq.R2_L007.T C3N-00199 LUAD RNA-Seq tumor CPT0014260009 170818_UNC32-K00270_0050_AHL2FHBBXX_CAGATC_S19_L007_R2_001.fastq.gz 4133802684 FASTQ R2_L007 unaligned CPTAC3 95de9af0-fc5c-47a7-91d4-5a10565af45e 881f90ff41aeb53298aa408f48b11d5c { 'aliquot_tag': 'ALQ_9b76974f', 'gdc_sample_type': 'Primary Tumor' } +C3N-00199.RNA-Seq.genomic.A.hg38 C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 6fb0db27-feb4-40c4-b8a0-7b53deddd97d.rna_seq.genomic.gdc_realn.bam 7142423942 BAM genomic harmonized CPTAC3 6a882b43-1e18-4b68-834e-900b2512f0e5 18790d5c84abbaed7d4910ff289e096e { 'aliquot_tag': 'ALQ_89991d0f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00199.RNA-Seq.genomic.T.hg38 C3N-00199 LUAD RNA-Seq tumor CPT0014260009 7a6037ab-a49f-4469-8ec4-f6ff52a6e59a.rna_seq.genomic.gdc_realn.bam 7765550740 BAM genomic harmonized CPTAC3 0a604ffc-daad-4018-a7af-b2ffa878a865 91489c8222569c13f38d38fd0fc0af92 { 'aliquot_tag': 'ALQ_9b76974f', 'gdc_sample_type': 'Primary Tumor' } +C3N-00199.RNA-Seq.R1_L002.A C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L002_R1_001.fastq.gz 3337555304 FASTQ R1_L002 unaligned CPTAC3 cc616a5c-2e83-4128-a777-a4b64d98b8a5 33e3b6b28d4a4af0e7efc7161b5454da { 'aliquot_tag': 'ALQ_89991d0f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-00199.RNA-Seq.R1_L007.T C3N-00199 LUAD RNA-Seq tumor CPT0014260009 170818_UNC32-K00270_0050_AHL2FHBBXX_CAGATC_S19_L007_R1_001.fastq.gz 3822441410 FASTQ R1_L007 unaligned CPTAC3 0f457298-17f9-479a-b9f8-94752080825d 7354b54c4165b9c66ef64ffce2e1bb3a { 'aliquot_tag': 'ALQ_9b76974f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00199.RNA-Seq.R2_L002.A C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L002_R2_001.fastq.gz 3632090303 FASTQ R2_L002 unaligned CPTAC3 5c4657a3-2bbb-41c4-a849-c35f88650bef 9ad488f920b68c63f15df210a652a0a1 { 'aliquot_tag': 'ALQ_89991d0f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-00199.RNA-Seq.R2_L007.T C3N-00199 LUAD RNA-Seq tumor CPT0014260009 170818_UNC32-K00270_0050_AHL2FHBBXX_CAGATC_S19_L007_R2_001.fastq.gz 4133802684 FASTQ R2_L007 unaligned CPTAC3 95de9af0-fc5c-47a7-91d4-5a10565af45e 881f90ff41aeb53298aa408f48b11d5c { 'aliquot_tag': 'ALQ_9b76974f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00199.RNA-Seq.transcriptome.A.hg38 C3N-00199 LUAD RNA-Seq tissue_normal CPT0014290006 6fb0db27-feb4-40c4-b8a0-7b53deddd97d.rna_seq.transcriptome.gdc_realn.bam 8086611731 BAM transcriptome harmonized CPTAC3 77f0ca33-cbff-4630-b09e-d6f64d34bca1 3404aade9530d31fd5b11381f6b0f780 { 'aliquot_tag': 'ALQ_89991d0f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00199.RNA-Seq.transcriptome.T.hg38 C3N-00199 LUAD RNA-Seq tumor CPT0014260009 7a6037ab-a49f-4469-8ec4-f6ff52a6e59a.rna_seq.transcriptome.gdc_realn.bam 9366138674 BAM transcriptome harmonized CPTAC3 a8b1ce52-c568-4b1c-95d2-032188eb343e a7241a238fdd434ae900d7d85d11d61a { 'aliquot_tag': 'ALQ_9b76974f', 'gdc_sample_type': 'Primary Tumor' } C3N-00199.WGS.A C3N-00199 LUAD WGS tissue_normal CPT0014290009 CPT0014290009.WholeGenome.RP-1303.bam 50489454596 BAM aligned CPTAC3 5307414c-87a4-4e14-8ad1-34f0c5987fb7 41199e0de8475c30bcadb08d7ca6402e { 'aliquot_tag': 'ALQ_1926009e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19268,12 +21029,15 @@ C3N-00200.MethArray.Red.T C3N-00200 UCEC Methylation Array tumor CPT0017870006 2 C3N-00200.miRNA-Seq.T C3N-00200 UCEC miRNA-Seq tumor CPT0017870009 180924_UNC31-K00269_0154_AHWTMLBBXX_TATAAT_S28_L002_R1_001.unaln.bam 242354930 BAM unaligned CPTAC3 a47fc920-a2e5-47e8-84d8-7f58e8086487 7ca95cb7206ba4cfd2a5ba455bbf9821 { 'aliquot_tag': 'ALQ_36658704', 'gdc_sample_type': 'Primary Tumor' } C3N-00200.miRNA-Seq.T.hg38 C3N-00200 UCEC miRNA-Seq tumor CPT0017870009 46a31ff9-04a0-4881-9f74-18f06776913d_mirnaseq_gdc_realn.bam 263298594 BAM harmonized CPTAC3 59fbf5d9-667d-4e3a-8756-1ca458d02116 724139f734f8637a2684723439706028 { 'aliquot_tag': 'ALQ_36658704', 'gdc_sample_type': 'Primary Tumor' } C3N-00200.RNA-Seq.chimeric.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0017870009 8cf77ac4-0f8f-490b-b468-4910d14495d7.rna_seq.chimeric.gdc_realn.bam 50950510 BAM chimeric harmonized CPTAC3 56a860f4-b4d7-4454-8261-513dafd9f9d8 0110bdbeabd796bf23249de813ce64eb { 'aliquot_tag': 'ALQ_36658704', 'gdc_sample_type': 'Primary Tumor' } +C3N-00200.RNA-Seq.chimeric.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0018090001 f22d75a7-48ca-419d-95ea-f33a21944ccf.rna_seq.chimeric.gdc_realn.bam 11431766 BAM chimeric harmonized CPTAC3 eece3823-d68a-4802-b4ef-451232341025 b9dfe9f3efe10d34afc0f5fde25d70f1 { 'aliquot_tag': 'ALQ_9d9543d3', 'gdc_sample_type': 'Primary Tumor' } C3N-00200.RNA-Seq.genomic.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0017870009 8cf77ac4-0f8f-490b-b468-4910d14495d7.rna_seq.genomic.gdc_realn.bam 6443811564 BAM genomic harmonized CPTAC3 c08ee352-f3ff-4acd-9613-75fd7d5baf53 96dff878170785682b06d7b719856608 { 'aliquot_tag': 'ALQ_36658704', 'gdc_sample_type': 'Primary Tumor' } -C3N-00200.RNA-Seq.R1_L006.T C3N-00200 UCEC RNA-Seq tumor CPT0017870009 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 2821816577 FASTQ R1_L006 unaligned CPTAC3 c9c50554-d2cc-4a32-a115-38a396a175f3 8c902be149cf3131991ae808e84ff5d8 { 'aliquot_tag': 'ALQ_36658704', 'gdc_sample_type': 'Primary Tumor' } -C3N-00200.RNA-Seq.R1_.T C3N-00200 UCEC RNA-Seq tumor CPT0018090001 20210714_P1_D5_WB7988_plate1_S41_R1_001.fastq.gz 4365257216 FASTQ R1_ unaligned CPTAC3 87c4c700-700c-4400-8d8a-579d4e3995d4 a323cbfa19293b18dc7e15c31eb529bd { 'aliquot_tag': 'ALQ_9d9543d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00200.RNA-Seq.R2_L006.T C3N-00200 UCEC RNA-Seq tumor CPT0017870009 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 3002112939 FASTQ R2_L006 unaligned CPTAC3 95fff05f-06dc-4463-a6b9-9cb88669fe24 6986967a2bd48bb8cd586d29bd4279e6 { 'aliquot_tag': 'ALQ_36658704', 'gdc_sample_type': 'Primary Tumor' } -C3N-00200.RNA-Seq.R2_.T C3N-00200 UCEC RNA-Seq tumor CPT0018090001 20210714_P1_D5_WB7988_plate1_S41_R2_001.fastq.gz 5194079741 FASTQ R2_ unaligned CPTAC3 67cbdb24-9159-4425-a6b8-8ce5399bdb39 7c75230aea59de287e09029084b62098 { 'aliquot_tag': 'ALQ_9d9543d3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00200.RNA-Seq.genomic.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0018090001 f22d75a7-48ca-419d-95ea-f33a21944ccf.rna_seq.genomic.gdc_realn.bam 9434567626 BAM genomic harmonized CPTAC3 cd132700-dd5c-46fa-ae97-eb9424ff40fb 10f0a6816e3a0d2aa3617069d696cf5a { 'aliquot_tag': 'ALQ_9d9543d3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00200.RNA-Seq.R1_L006.T C3N-00200 UCEC RNA-Seq tumor CPT0017870009 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTTCC_S22_L006_R1_001.fastq.gz 2821816577 FASTQ R1_L006 unaligned CPTAC3 c9c50554-d2cc-4a32-a115-38a396a175f3 8c902be149cf3131991ae808e84ff5d8 { 'aliquot_tag': 'ALQ_36658704', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00200.RNA-Seq.R2_L006.T C3N-00200 UCEC RNA-Seq tumor CPT0017870009 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTTCC_S22_L006_R2_001.fastq.gz 3002112939 FASTQ R2_L006 unaligned CPTAC3 95fff05f-06dc-4463-a6b9-9cb88669fe24 6986967a2bd48bb8cd586d29bd4279e6 { 'aliquot_tag': 'ALQ_36658704', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-00200.RNA-Seq.T C3N-00200 UCEC RNA-Seq tumor CPT0018090001 20210714_P1_D5_WB7988_plate1_S41_R1_001.fastq.gz 4365257216 FASTQ unaligned CPTAC3 87c4c700-700c-4400-8d8a-579d4e3995d4 a323cbfa19293b18dc7e15c31eb529bd +C3N-00200.RNA-Seq.T C3N-00200 UCEC RNA-Seq tumor CPT0018090001 20210714_P1_D5_WB7988_plate1_S41_R2_001.fastq.gz 5194079741 FASTQ unaligned CPTAC3 67cbdb24-9159-4425-a6b8-8ce5399bdb39 7c75230aea59de287e09029084b62098 C3N-00200.RNA-Seq.transcriptome.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0017870009 8cf77ac4-0f8f-490b-b468-4910d14495d7.rna_seq.transcriptome.gdc_realn.bam 6076626421 BAM transcriptome harmonized CPTAC3 95dd4f76-241e-418c-af88-a41b50917ab2 5b179cc78cac65b3cb6b52224c9a889f { 'aliquot_tag': 'ALQ_36658704', 'gdc_sample_type': 'Primary Tumor' } +C3N-00200.RNA-Seq.transcriptome.T.hg38 C3N-00200 UCEC RNA-Seq tumor CPT0018090001 f22d75a7-48ca-419d-95ea-f33a21944ccf.rna_seq.transcriptome.gdc_realn.bam 8827213474 BAM transcriptome harmonized CPTAC3 0166e58b-baad-46c2-b7ca-cd39d74b20bd 1b21e19ae7a451f506f2b50aebd82bb6 { 'aliquot_tag': 'ALQ_9d9543d3', 'gdc_sample_type': 'Primary Tumor' } C3N-00200.WGS.N C3N-00200 UCEC WGS blood_normal CPT0028400002 CPT0028400002.WholeGenome.RP-1303.bam 61727176584 BAM aligned CPTAC3 d8d64456-49ee-432f-9890-5b9d82c2f062 40e64c48e88614494410b56ab3da9891 { 'aliquot_tag': 'ALQ_1c9235ed', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00200.WGS.N.hg38 C3N-00200 UCEC WGS blood_normal CPT0028400002 136eb1b9-e1da-4a4d-9637-708e3553ba64_gdc_realn.bam 88313003884 BAM harmonized CPTAC3 636910f0-d39e-4463-abd3-f7dafbbf34fc b21f0bfc42be3843424fe1d5775a5c7e { 'aliquot_tag': 'ALQ_1c9235ed', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00200.WGS.T C3N-00200 UCEC WGS tumor CPT0017870006 CPT0017870006.WholeGenome.RP-1303.bam 64393427552 BAM aligned CPTAC3 5722cf1e-90f7-470a-8697-306e855a9b22 45f2eabc37f65cd47e917455834580c3 { 'aliquot_tag': 'ALQ_a6da9a95', 'gdc_sample_type': 'Primary Tumor' } @@ -19294,10 +21058,10 @@ C3N-00203.RNA-Seq.chimeric.A.hg38 C3N-00203 LUAD RNA-Seq tissue_normal CPT009037 C3N-00203.RNA-Seq.chimeric.T.hg38 C3N-00203 LUAD RNA-Seq tumor CPT0090340006 8736bfa0-72a3-49c1-bc65-634c2f85d099.rna_seq.chimeric.gdc_realn.bam 65764281 BAM chimeric harmonized CPTAC3 4e68de80-869c-40a9-a037-f10533abe5b5 4ab1180ebd865b0a7d0e047802d9d5e4 { 'aliquot_tag': 'ALQ_9dff35bd', 'gdc_sample_type': 'Primary Tumor' } C3N-00203.RNA-Seq.genomic.A.hg38 C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 7d1c1029-0b90-4161-899c-84d88c61d992.rna_seq.genomic.gdc_realn.bam 9224378228 BAM genomic harmonized CPTAC3 0dcd3218-6d65-443a-a060-124180860c79 13fa1f417573871a5c3e6c9b61fcb6bc { 'aliquot_tag': 'ALQ_da5f4f6d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00203.RNA-Seq.genomic.T.hg38 C3N-00203 LUAD RNA-Seq tumor CPT0090340006 8736bfa0-72a3-49c1-bc65-634c2f85d099.rna_seq.genomic.gdc_realn.bam 9846270862 BAM genomic harmonized CPTAC3 c183df4f-d1a2-42ab-bc1e-2fb4079ef4d6 d92612b5c113826b1de84dffbaceaf32 { 'aliquot_tag': 'ALQ_9dff35bd', 'gdc_sample_type': 'Primary Tumor' } -C3N-00203.RNA-Seq.R1_L006.A C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L006_R1_001.fastq.gz 4304345078 FASTQ R1_L006 unaligned CPTAC3 fec6fc9a-ee8c-4749-8aa6-d7078dc761c9 61a5ea67939b8ef7bcace8d3a0816207 { 'aliquot_tag': 'ALQ_da5f4f6d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00203.RNA-Seq.R1_L008.T C3N-00203 LUAD RNA-Seq tumor CPT0090340006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L008_R1_001.fastq.gz 4007939340 FASTQ R1_L008 unaligned CPTAC3 b0e1dba1-1694-48ef-90a3-e1424dcc9368 e8c9cd3be97efe38827d01c2fe19f96a { 'aliquot_tag': 'ALQ_9dff35bd', 'gdc_sample_type': 'Primary Tumor' } -C3N-00203.RNA-Seq.R2_L006.A C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L006_R2_001.fastq.gz 4747925678 FASTQ R2_L006 unaligned CPTAC3 d25781de-729a-4f02-81ec-04a384c09768 004e8b7611cb903aaac53aa307a2f332 { 'aliquot_tag': 'ALQ_da5f4f6d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00203.RNA-Seq.R2_L008.T C3N-00203 LUAD RNA-Seq tumor CPT0090340006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L008_R2_001.fastq.gz 4515898489 FASTQ R2_L008 unaligned CPTAC3 b5248075-acbe-4b4b-b323-beec3158afbd 45ab8f13519f7eafe7399957038a49fe { 'aliquot_tag': 'ALQ_9dff35bd', 'gdc_sample_type': 'Primary Tumor' } +C3N-00203.RNA-Seq.R1_L006.A C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L006_R1_001.fastq.gz 4304345078 FASTQ R1_L006 unaligned CPTAC3 fec6fc9a-ee8c-4749-8aa6-d7078dc761c9 61a5ea67939b8ef7bcace8d3a0816207 { 'aliquot_tag': 'ALQ_da5f4f6d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00203.RNA-Seq.R1_L008.T C3N-00203 LUAD RNA-Seq tumor CPT0090340006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L008_R1_001.fastq.gz 4007939340 FASTQ R1_L008 unaligned CPTAC3 b0e1dba1-1694-48ef-90a3-e1424dcc9368 e8c9cd3be97efe38827d01c2fe19f96a { 'aliquot_tag': 'ALQ_9dff35bd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00203.RNA-Seq.R2_L006.A C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 180109_UNC31-K00269_0107_AHNHY2BBXX_TAGCTT_S4_L006_R2_001.fastq.gz 4747925678 FASTQ R2_L006 unaligned CPTAC3 d25781de-729a-4f02-81ec-04a384c09768 004e8b7611cb903aaac53aa307a2f332 { 'aliquot_tag': 'ALQ_da5f4f6d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-00203.RNA-Seq.R2_L008.T C3N-00203 LUAD RNA-Seq tumor CPT0090340006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L008_R2_001.fastq.gz 4515898489 FASTQ R2_L008 unaligned CPTAC3 b5248075-acbe-4b4b-b323-beec3158afbd 45ab8f13519f7eafe7399957038a49fe { 'aliquot_tag': 'ALQ_9dff35bd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00203.RNA-Seq.transcriptome.A.hg38 C3N-00203 LUAD RNA-Seq tissue_normal CPT0090370006 7d1c1029-0b90-4161-899c-84d88c61d992.rna_seq.transcriptome.gdc_realn.bam 11389908265 BAM transcriptome harmonized CPTAC3 ef6f0cb7-6617-44ab-aabc-e725f601d010 d36b41557247f2587c9a1724011a7c58 { 'aliquot_tag': 'ALQ_da5f4f6d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00203.RNA-Seq.transcriptome.T.hg38 C3N-00203 LUAD RNA-Seq tumor CPT0090340006 8736bfa0-72a3-49c1-bc65-634c2f85d099.rna_seq.transcriptome.gdc_realn.bam 10982533627 BAM transcriptome harmonized CPTAC3 7dfb2e3f-d2d3-4045-b11f-5984d2b6dccd cd67e9b3014a2ca34bb767268107efe9 { 'aliquot_tag': 'ALQ_9dff35bd', 'gdc_sample_type': 'Primary Tumor' } C3N-00203.WGS.A C3N-00203 LUAD WGS tissue_normal CPT0090370009 CPT0090370009.WholeGenome.RP-1303.bam 52227247941 BAM aligned CPTAC3 3e868879-73a1-45b8-91c5-dd58b028528e a09897cd539e8667391ddd5fff46b393 { 'aliquot_tag': 'ALQ_4ae052fc', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19320,16 +21084,19 @@ C3N-00204.miRNA-Seq.T C3N-00204 HNSCC miRNA-Seq tumor CPT0084630015 180724_UNC32 C3N-00204.miRNA-Seq.T.hg38 C3N-00204 HNSCC miRNA-Seq tumor CPT0084630015 2cd497e1-6505-47b8-8765-6cf8a7f4f381_mirnaseq_gdc_realn.bam 295915377 BAM harmonized CPTAC3 220b2e6a-21c8-43a4-8c95-b6283981ad77 cca33175d73f7f722a8c63fb30c88ea4 { 'aliquot_tag': 'ALQ_c7e53c68', 'gdc_sample_type': 'Primary Tumor' } C3N-00204.RNA-Seq.chimeric.A.hg38 C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 f8cb6a9c-1c9c-431b-9751-e28d17768470.rna_seq.chimeric.gdc_realn.bam 28817736 BAM chimeric harmonized CPTAC3 ab0cb2af-9844-4419-be4b-917f9d34969b 9a5611fcb8111652bdf1ddae48b2aba5 { 'aliquot_tag': 'ALQ_bfb099a5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00204.RNA-Seq.chimeric.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 ccd9bcfe-77a9-4408-a3fa-f8dbcc53be76.rna_seq.chimeric.gdc_realn.bam 70796344 BAM chimeric harmonized CPTAC3 a2e53ae5-adb9-46ef-81d0-939cceadc000 66fead0b9c896a4d77c64bd0718d535e { 'aliquot_tag': 'ALQ_c7e53c68', 'gdc_sample_type': 'Primary Tumor' } -C3N-00204.RNA-Seq.genomic.A.hg38 C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 f8cb6a9c-1c9c-431b-9751-e28d17768470.rna_seq.genomic.gdc_realn.bam 9282512306 BAM genomic harmonized CPTAC3 2eda317a-122e-47de-ab2d-4879212ba6a5 6523f51b02ef4d4e2c5757d3d98a80c3 { 'aliquot_tag': 'ALQ_bfb099a5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00204.RNA-Seq.chimeric.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 ec696c1f-7367-4b8b-888c-4cfaca0b0e28.rna_seq.chimeric.gdc_realn.bam 300349521 BAM chimeric harmonized CPTAC3 3f583db0-7cb6-415e-af96-c7f7e18c8aac a70cfb844a9d54c2e76f4a5d7532df11 { 'aliquot_tag': 'ALQ_9f6103a5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00204.RNA-Seq.genomic.A.hg38 C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 f8cb6a9c-1c9c-431b-9751-e28d17768470.rna_seq.genomic.gdc_realn.bam 9282512306 BAM genomic harmonized CPTAC3 bef77779-0017-4ea2-974f-cb6c6bffabc2 6523f51b02ef4d4e2c5757d3d98a80c3 { 'aliquot_tag': 'ALQ_bfb099a5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00204.RNA-Seq.genomic.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 ccd9bcfe-77a9-4408-a3fa-f8dbcc53be76.rna_seq.genomic.gdc_realn.bam 8561131904 BAM genomic harmonized CPTAC3 1dced3ca-9b4b-4839-ad6e-383c24adc9f1 405ced5bc7486c8c5ca791fdebaa1065 { 'aliquot_tag': 'ALQ_c7e53c68', 'gdc_sample_type': 'Primary Tumor' } -C3N-00204.RNA-Seq.R1_L004.T C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 171116_UNC31-K00269_0093_BHMFKJBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 4244512016 FASTQ R1_L004 unaligned CPTAC3 44754663-1cec-42d0-934e-77fd9b38652e a3c0bb2a06040268dbe4a79cd0cd9d81 { 'aliquot_tag': 'ALQ_c7e53c68', 'gdc_sample_type': 'Primary Tumor' } -C3N-00204.RNA-Seq.R1_L005.A C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 180516_UNC31-K00269_0130_BHV22JBBXX_CGATGT_S18_L005_R1_001.fastq.gz 4427440579 FASTQ R1_L005 unaligned CPTAC3 30f4e1e2-0403-4234-83ef-4f2ce782d7ad 8014d5217bffbe60e03ba0a0396b9658 { 'aliquot_tag': 'ALQ_bfb099a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00204.RNA-Seq.R1_.T C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 20210714_P1_B1_WB7988_plate1_S13_R1_001.fastq.gz 8669215519 FASTQ R1_ unaligned CPTAC3 02e4024a-9946-47df-8094-f39ff22aebf7 875fa6ac786bfc2bcf19c372e720ab16 { 'aliquot_tag': 'ALQ_9f6103a5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00204.RNA-Seq.R2_L004.T C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 171116_UNC31-K00269_0093_BHMFKJBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4692864567 FASTQ R2_L004 unaligned CPTAC3 41ab7edc-9e33-4ee6-8a40-66d4a1efef50 f901c98ee3f0fca300805837c19ac65a { 'aliquot_tag': 'ALQ_c7e53c68', 'gdc_sample_type': 'Primary Tumor' } -C3N-00204.RNA-Seq.R2_L005.A C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 180516_UNC31-K00269_0130_BHV22JBBXX_CGATGT_S18_L005_R2_001.fastq.gz 4782581265 FASTQ R2_L005 unaligned CPTAC3 764eb37d-6688-4031-a97b-1bd3336de057 e20c5763f3dd27ac83ae98573bdfcf10 { 'aliquot_tag': 'ALQ_bfb099a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00204.RNA-Seq.R2_.T C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 20210714_P1_B1_WB7988_plate1_S13_R2_001.fastq.gz 9038794085 FASTQ R2_ unaligned CPTAC3 209cd6f7-c9bb-4399-9824-6f47b9ee5c47 1950b378452e3e7aa2c4fd41101be583 { 'aliquot_tag': 'ALQ_9f6103a5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00204.RNA-Seq.genomic.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 ec696c1f-7367-4b8b-888c-4cfaca0b0e28.rna_seq.genomic.gdc_realn.bam 14096458087 BAM genomic harmonized CPTAC3 fffa679c-a9ec-45b7-a890-5ba7484ecf4b c7d145f1542926ccc61f4e7d1864efa1 { 'aliquot_tag': 'ALQ_9f6103a5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00204.RNA-Seq.R1_L004.T C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 171116_UNC31-K00269_0093_BHMFKJBBXX_GCCAAT_S14_L004_R1_001.fastq.gz 4244512016 FASTQ R1_L004 unaligned CPTAC3 44754663-1cec-42d0-934e-77fd9b38652e a3c0bb2a06040268dbe4a79cd0cd9d81 { 'aliquot_tag': 'ALQ_c7e53c68', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00204.RNA-Seq.R1_L005.A C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 180516_UNC31-K00269_0130_BHV22JBBXX_CGATGT_S18_L005_R1_001.fastq.gz 4427440579 FASTQ R1_L005 unaligned CPTAC3 30f4e1e2-0403-4234-83ef-4f2ce782d7ad 8014d5217bffbe60e03ba0a0396b9658 { 'aliquot_tag': 'ALQ_bfb099a5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00204.RNA-Seq.R2_L004.T C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 171116_UNC31-K00269_0093_BHMFKJBBXX_GCCAAT_S14_L004_R2_001.fastq.gz 4692864567 FASTQ R2_L004 unaligned CPTAC3 41ab7edc-9e33-4ee6-8a40-66d4a1efef50 f901c98ee3f0fca300805837c19ac65a { 'aliquot_tag': 'ALQ_c7e53c68', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00204.RNA-Seq.R2_L005.A C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 180516_UNC31-K00269_0130_BHV22JBBXX_CGATGT_S18_L005_R2_001.fastq.gz 4782581265 FASTQ R2_L005 unaligned CPTAC3 764eb37d-6688-4031-a97b-1bd3336de057 e20c5763f3dd27ac83ae98573bdfcf10 { 'aliquot_tag': 'ALQ_bfb099a5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-00204.RNA-Seq.T C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 20210714_P1_B1_WB7988_plate1_S13_R1_001.fastq.gz 8669215519 FASTQ unaligned CPTAC3 02e4024a-9946-47df-8094-f39ff22aebf7 875fa6ac786bfc2bcf19c372e720ab16 +C3N-00204.RNA-Seq.T C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 20210714_P1_B1_WB7988_plate1_S13_R2_001.fastq.gz 9038794085 FASTQ unaligned CPTAC3 209cd6f7-c9bb-4399-9824-6f47b9ee5c47 1950b378452e3e7aa2c4fd41101be583 C3N-00204.RNA-Seq.transcriptome.A.hg38 C3N-00204 HNSCC RNA-Seq tissue_normal CPT0084650007 f8cb6a9c-1c9c-431b-9751-e28d17768470.rna_seq.transcriptome.gdc_realn.bam 14027623473 BAM transcriptome harmonized CPTAC3 e06afed4-0c94-46be-96b3-da96f21f7efd 2c5be1e50d0975e4fb1012a28dc42f3a { 'aliquot_tag': 'ALQ_bfb099a5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00204.RNA-Seq.transcriptome.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0084630015 ccd9bcfe-77a9-4408-a3fa-f8dbcc53be76.rna_seq.transcriptome.gdc_realn.bam 11412747756 BAM transcriptome harmonized CPTAC3 644aca7c-f7f2-4559-a233-55514ed7b12c a5781b8713bdb62c3835a1b188cf213e { 'aliquot_tag': 'ALQ_c7e53c68', 'gdc_sample_type': 'Primary Tumor' } +C3N-00204.RNA-Seq.transcriptome.T.hg38 C3N-00204 HNSCC RNA-Seq tumor CPT0313780011 ec696c1f-7367-4b8b-888c-4cfaca0b0e28.rna_seq.transcriptome.gdc_realn.bam 7043952928 BAM transcriptome harmonized CPTAC3 26038071-3f06-462b-a5c3-3ff07f8e4e82 b8e6f5afe5716ce7e33ea9c3847094a9 { 'aliquot_tag': 'ALQ_9f6103a5', 'gdc_sample_type': 'Primary Tumor' } C3N-00204.WGS.N C3N-00204 HNSCC WGS blood_normal CPT0085320002 CPT0085320002.WholeGenome.RP-1303.bam 55897678774 BAM aligned CPTAC3 75f1ffcf-ac51-47e9-87e9-543a1949b0b9 8a2ed6903292699823b0b14a831bdc02 { 'aliquot_tag': 'ALQ_8b402b3d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00204.WGS.N.hg38 C3N-00204 HNSCC WGS blood_normal CPT0085320002 c93de7f1-762b-4ca7-a1e4-8f959c170856_wgs_gdc_realn.bam 81401583726 BAM harmonized CPTAC3 e448c645-2d99-456b-8e3f-965f5d0b0d10 e03ad3b16f65406d0ca7340317147623 { 'aliquot_tag': 'ALQ_8b402b3d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00204.WGS.T C3N-00204 HNSCC WGS tumor CPT0084630012 CPT0084630012.WholeGenome.RP-1303.bam 71308873899 BAM aligned CPTAC3 35f357ab-f059-4ed0-82db-61ca0dbae404 05333b427216cea9831806716ac9aba1 { 'aliquot_tag': 'ALQ_5981a9cb', 'gdc_sample_type': 'Primary Tumor' } @@ -19343,9 +21110,9 @@ C3N-00211.MethArray.Red.T C3N-00211 LSCC Methylation Array tumor CPT0090440009 2 C3N-00211.miRNA-Seq.T C3N-00211 LSCC miRNA-Seq tumor CPT0090440006 190813_UNC32-K00270_0196_AH5MCWBBXY_CTAGCT_S24_L002_R1_001.unaln.bam 734277190 BAM unaligned CPTAC3 be6461f0-fa53-47f5-a156-8d6704c0220e 918485b323551f56574a26d0a612f66e { 'aliquot_tag': 'ALQ_80fa0505', 'gdc_sample_type': 'Primary Tumor' } C3N-00211.miRNA-Seq.T.hg38 C3N-00211 LSCC miRNA-Seq tumor CPT0090440006 036b0644-94e0-4323-9844-df465047b136_mirnaseq_gdc_realn.bam 807988377 BAM harmonized CPTAC3 0f62c070-7891-44dc-9cf4-32f40d9c9ecd 183f3644a5f2a68857f6b717c0088044 { 'aliquot_tag': 'ALQ_80fa0505', 'gdc_sample_type': 'Primary Tumor' } C3N-00211.RNA-Seq.chimeric.T.hg38 C3N-00211 LSCC RNA-Seq tumor CPT0090440006 06fac780-abc6-4bbe-9480-3399eca7b9c8.rna_seq.chimeric.gdc_realn.bam 73674455 BAM chimeric harmonized CPTAC3 8909d365-d3fe-4ec8-87fb-21c8b2374f22 029981e4f914961ae3cef4e2e6e62c0c { 'aliquot_tag': 'ALQ_80fa0505', 'gdc_sample_type': 'Primary Tumor' } -C3N-00211.RNA-Seq.genomic.T.hg38 C3N-00211 LSCC RNA-Seq tumor CPT0090440006 06fac780-abc6-4bbe-9480-3399eca7b9c8.rna_seq.genomic.gdc_realn.bam 8876154296 BAM genomic harmonized CPTAC3 d7474479-a4e3-421d-bc32-842c52b9a7b9 2e3d75e21533e6456962046277addc40 { 'aliquot_tag': 'ALQ_80fa0505', 'gdc_sample_type': 'Primary Tumor' } -C3N-00211.RNA-Seq.R1_L004.T C3N-00211 LSCC RNA-Seq tumor CPT0090440006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L004_R1_001.fastq.gz 4078231570 FASTQ R1_L004 unaligned CPTAC3 3c187320-d811-4fd4-ad3f-98b60e63efad 7b76738a7dc5c6819b2c5813af448dcc { 'aliquot_tag': 'ALQ_80fa0505', 'gdc_sample_type': 'Primary Tumor' } -C3N-00211.RNA-Seq.R2_L004.T C3N-00211 LSCC RNA-Seq tumor CPT0090440006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L004_R2_001.fastq.gz 4522993021 FASTQ R2_L004 unaligned CPTAC3 c02c1bc2-0f97-410f-b614-e61afdf267c3 64abaafebb6ced4264e7151b962c29c7 { 'aliquot_tag': 'ALQ_80fa0505', 'gdc_sample_type': 'Primary Tumor' } +C3N-00211.RNA-Seq.genomic.T.hg38 C3N-00211 LSCC RNA-Seq tumor CPT0090440006 06fac780-abc6-4bbe-9480-3399eca7b9c8.rna_seq.genomic.gdc_realn.bam 8876154296 BAM genomic harmonized CPTAC3 b19bbddb-a88f-4b3c-a074-cc49796f623a 2e3d75e21533e6456962046277addc40 { 'aliquot_tag': 'ALQ_80fa0505', 'gdc_sample_type': 'Primary Tumor' } +C3N-00211.RNA-Seq.R1_L004.T C3N-00211 LSCC RNA-Seq tumor CPT0090440006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L004_R1_001.fastq.gz 4078231570 FASTQ R1_L004 unaligned CPTAC3 3c187320-d811-4fd4-ad3f-98b60e63efad 7b76738a7dc5c6819b2c5813af448dcc { 'aliquot_tag': 'ALQ_80fa0505', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00211.RNA-Seq.R2_L004.T C3N-00211 LSCC RNA-Seq tumor CPT0090440006 171116_UNC31-K00269_0093_BHMFKJBBXX_ACAGTG_S9_L004_R2_001.fastq.gz 4522993021 FASTQ R2_L004 unaligned CPTAC3 c02c1bc2-0f97-410f-b614-e61afdf267c3 64abaafebb6ced4264e7151b962c29c7 { 'aliquot_tag': 'ALQ_80fa0505', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-00211.RNA-Seq.transcriptome.T.hg38 C3N-00211 LSCC RNA-Seq tumor CPT0090440006 06fac780-abc6-4bbe-9480-3399eca7b9c8.rna_seq.transcriptome.gdc_realn.bam 12963684076 BAM transcriptome harmonized CPTAC3 b1198dfd-06b5-4a71-ad5c-032378482799 dd3351089e1abbb861827d109017a214 { 'aliquot_tag': 'ALQ_80fa0505', 'gdc_sample_type': 'Primary Tumor' } C3N-00211.WGS.N C3N-00211 LSCC WGS blood_normal CPT0092490002 CPT0092490002.WholeGenome.RP-1303.bam 66392924448 BAM aligned CPTAC3 565655ed-29be-4590-9413-9441187dc6fb df4eb32914dadd6d13c0daae9c56beb6 { 'aliquot_tag': 'ALQ_e8981484', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00211.WGS.N.hg38 C3N-00211 LSCC WGS blood_normal CPT0092490002 bbab7603-c304-4c44-a735-91e677083ee9_wgs_gdc_realn.bam 98091811789 BAM harmonized CPTAC3 0ebfa20c-097f-47c4-afb3-9688c6c5b074 a677e14acb4b4c02de45232884e0a72f { 'aliquot_tag': 'ALQ_e8981484', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19356,6 +21123,7 @@ C3N-00211.WXS.N.hg38 C3N-00211 LSCC WXS blood_normal CPT0092490002 bbab7603-c304 C3N-00211.WXS.T C3N-00211 LSCC WXS tumor CPT0090440009 CPT0090440009.WholeExome.RP-1303.bam 38073808710 BAM aligned CPTAC3 e23a0176-239f-4d2d-9daf-2a54a46b21c3 f0016248a78001fe8af8543250f24efa { 'aliquot_tag': 'ALQ_10451894', 'gdc_sample_type': 'Primary Tumor' } C3N-00211.WXS.T.hg38 C3N-00211 LSCC WXS tumor CPT0090440009 7ac573c7-ed1b-4085-a310-805e1aff4b20_wxs_gdc_realn.bam 51587274152 BAM harmonized CPTAC3 5475774a-cfde-4aa3-8cd1-85fda9e6260f bdd0bf8c3a979f119c6e555130ee3135 { 'aliquot_tag': 'ALQ_10451894', 'gdc_sample_type': 'Primary Tumor' } C3N-00217.DUP_f8438300.WGS.T C3N-00217 LUAD WGS tumor CPT0090570010_2 CPT0090570010_2.WholeGenome.RP-2158.bam 127344938608 BAM aligned CPTAC3 b426b670-69ad-44b2-af64-0634576419c1 977e66ef56506a9496caa345ff4b845e { 'aliquot_tag': 'DUP_f8438300', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot' } +C3N-00217.DUP_f8438300.WGS.T.hg38 C3N-00217 LUAD WGS tumor CPT0090570010_2 6b31c308-d231-49a6-bbba-2ef777c05b15_wgs_gdc_realn.bam 389114320352 BAM harmonized CPTAC3 5281174d-d8f0-46c0-a7cd-588d1e9375e2 4f7b627a0f2c4be75b00cf58525392da { 'aliquot_tag': 'DUP_f8438300', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot' } C3N-00217.MethArray.Green.A C3N-00217 LUAD Methylation Array tissue_normal CPT0090600009 203027390113_R03C01_Grn.idat 13676246 IDAT Green NA CPTAC3 73731e5f-72f0-4b4c-b2b3-a799ffe23fdb c6620ec6eefba1771976d282b5190b0e { 'aliquot_tag': 'ALQ_a80d1f5f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00217.MethArray.Green.T C3N-00217 LUAD Methylation Array tumor CPT0090570010 202234360025_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 79a982ef-e333-401b-8314-c23d667f1a40 36b5453c0b6395390b2bfa4205a5213b { 'aliquot_tag': 'ALQ_fc7e3804', 'gdc_sample_type': 'Primary Tumor' } C3N-00217.MethArray.Red.A C3N-00217 LUAD Methylation Array tissue_normal CPT0090600009 203027390113_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 cf25d240-6ed7-44cc-afa5-d802b41507ac 6c30c58c65c3c519eb1ce6743337e030 { 'aliquot_tag': 'ALQ_a80d1f5f', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19368,10 +21136,10 @@ C3N-00217.RNA-Seq.chimeric.A.hg38 C3N-00217 LUAD RNA-Seq tissue_normal CPT009060 C3N-00217.RNA-Seq.chimeric.T.hg38 C3N-00217 LUAD RNA-Seq tumor CPT0090570007 2d5f26e9-6b70-44ed-ae30-0931674c19ef.rna_seq.chimeric.gdc_realn.bam 111857221 BAM chimeric harmonized CPTAC3 cc8d6bbe-fa59-4799-9e20-f7aef45f83bc 4b59f28910886c7c94270a6b59d7473d { 'aliquot_tag': 'ALQ_7b019ce6', 'gdc_sample_type': 'Primary Tumor' } C3N-00217.RNA-Seq.genomic.A.hg38 C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 dca99dac-3649-485f-8999-b4294aca2341.rna_seq.genomic.gdc_realn.bam 8976709601 BAM genomic harmonized CPTAC3 2c96d195-8899-456c-b075-d120163f1f7d 3f889f95948d398d2f28e638adf3fff8 { 'aliquot_tag': 'ALQ_38b202ce', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00217.RNA-Seq.genomic.T.hg38 C3N-00217 LUAD RNA-Seq tumor CPT0090570007 2d5f26e9-6b70-44ed-ae30-0931674c19ef.rna_seq.genomic.gdc_realn.bam 10003931541 BAM genomic harmonized CPTAC3 abf62714-99e5-43ba-95cf-2d36ad002406 ab9d46f7e7bc41be32c2681482d30316 { 'aliquot_tag': 'ALQ_7b019ce6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00217.RNA-Seq.R1_L004.A C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 171205_UNC32-K00270_0069_BHN2HGBBXX_GCCAAT_S15_L004_R1_001.fastq.gz 4318279450 FASTQ R1_L004 unaligned CPTAC3 9a546dfe-983b-47a5-ad79-9d3afa19bed3 2f727b6e7347ed44ba5dc392072797d4 { 'aliquot_tag': 'ALQ_38b202ce', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00217.RNA-Seq.R1_L007.T C3N-00217 LUAD RNA-Seq tumor CPT0090570007 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L007_R1_001.fastq.gz 4555561516 FASTQ R1_L007 unaligned CPTAC3 e5407d3d-fda5-420e-8233-10820ba34973 a930133ef306f9512411c0627bb67fe3 { 'aliquot_tag': 'ALQ_7b019ce6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00217.RNA-Seq.R2_L004.A C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 171205_UNC32-K00270_0069_BHN2HGBBXX_GCCAAT_S15_L004_R2_001.fastq.gz 4749207885 FASTQ R2_L004 unaligned CPTAC3 140a1e6f-0963-4fc7-a207-b117dffcf933 68019584fc7d435b6c297730da58faaa { 'aliquot_tag': 'ALQ_38b202ce', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00217.RNA-Seq.R2_L007.T C3N-00217 LUAD RNA-Seq tumor CPT0090570007 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L007_R2_001.fastq.gz 4514469542 FASTQ R2_L007 unaligned CPTAC3 eb613c5b-712d-47f8-9b32-7391e77b8c8e 0ce18b237a957b79f94a99c93654a504 { 'aliquot_tag': 'ALQ_7b019ce6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00217.RNA-Seq.R1_L004.A C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 171205_UNC32-K00270_0069_BHN2HGBBXX_GCCAAT_S15_L004_R1_001.fastq.gz 4318279450 FASTQ R1_L004 unaligned CPTAC3 9a546dfe-983b-47a5-ad79-9d3afa19bed3 2f727b6e7347ed44ba5dc392072797d4 { 'aliquot_tag': 'ALQ_38b202ce', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-00217.RNA-Seq.R1_L007.T C3N-00217 LUAD RNA-Seq tumor CPT0090570007 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L007_R1_001.fastq.gz 4555561516 FASTQ R1_L007 unaligned CPTAC3 e5407d3d-fda5-420e-8233-10820ba34973 a930133ef306f9512411c0627bb67fe3 { 'aliquot_tag': 'ALQ_7b019ce6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00217.RNA-Seq.R2_L004.A C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 171205_UNC32-K00270_0069_BHN2HGBBXX_GCCAAT_S15_L004_R2_001.fastq.gz 4749207885 FASTQ R2_L004 unaligned CPTAC3 140a1e6f-0963-4fc7-a207-b117dffcf933 68019584fc7d435b6c297730da58faaa { 'aliquot_tag': 'ALQ_38b202ce', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-00217.RNA-Seq.R2_L007.T C3N-00217 LUAD RNA-Seq tumor CPT0090570007 171129_UNC32-K00270_0066_AHM25VBBXX_ATCACG_S5_L007_R2_001.fastq.gz 4514469542 FASTQ R2_L007 unaligned CPTAC3 eb613c5b-712d-47f8-9b32-7391e77b8c8e 0ce18b237a957b79f94a99c93654a504 { 'aliquot_tag': 'ALQ_7b019ce6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00217.RNA-Seq.transcriptome.A.hg38 C3N-00217 LUAD RNA-Seq tissue_normal CPT0090600006 dca99dac-3649-485f-8999-b4294aca2341.rna_seq.transcriptome.gdc_realn.bam 9661243344 BAM transcriptome harmonized CPTAC3 09be940c-462f-4a43-8356-7a2ff8cf5fa9 90ae7821928c003f9c3a08e621f4c49f { 'aliquot_tag': 'ALQ_38b202ce', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00217.RNA-Seq.transcriptome.T.hg38 C3N-00217 LUAD RNA-Seq tumor CPT0090570007 2d5f26e9-6b70-44ed-ae30-0931674c19ef.rna_seq.transcriptome.gdc_realn.bam 10541864499 BAM transcriptome harmonized CPTAC3 6da5a0f2-129e-4584-9a33-4f6660c06816 269ab54b17e52123bf9585a982b8059e { 'aliquot_tag': 'ALQ_7b019ce6', 'gdc_sample_type': 'Primary Tumor' } C3N-00217.WGS.A C3N-00217 LUAD WGS tissue_normal CPT0090600009 CPT0090600009.WholeGenome.RP-1303.bam 57069814766 BAM aligned CPTAC3 b5a7eb16-f4f3-4c9d-8069-47ef63483a75 e69ffadaedc686535030693f088edc14 { 'aliquot_tag': 'ALQ_a80d1f5f', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19395,11 +21163,11 @@ C3N-00221.miRNA-Seq.T.hg38 C3N-00221 LSCC miRNA-Seq tumor CPT0111150007 4cd3dbec C3N-00221.RNA-Seq.chimeric.A.hg38 C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 b3775e45-a320-4a62-be86-ff27811e6e07.rna_seq.chimeric.gdc_realn.bam 26883999 BAM chimeric harmonized CPTAC3 608ecee4-e391-4b59-8482-97d9c315bd91 19772f9759da203d085f7e7b5e99fe41 { 'aliquot_tag': 'ALQ_fb05d507', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00221.RNA-Seq.chimeric.T.hg38 C3N-00221 LSCC RNA-Seq tumor CPT0111150007 6503e0bf-25e4-4e05-a754-9200a5dbb4cb.rna_seq.chimeric.gdc_realn.bam 39075323 BAM chimeric harmonized CPTAC3 ab3878c6-be84-49ce-9589-460f21b1f6a5 1b2f507ef0c1f4b1edbf02fc7a66c7e1 { 'aliquot_tag': 'ALQ_f8b989d2', 'gdc_sample_type': 'Primary Tumor' } C3N-00221.RNA-Seq.genomic.A.hg38 C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 b3775e45-a320-4a62-be86-ff27811e6e07.rna_seq.genomic.gdc_realn.bam 8441938245 BAM genomic harmonized CPTAC3 a8cd3578-fe2b-453d-9a50-cf624cc72af7 a1ab4c0ecb68fc4f0fff2c87ca6d8c9b { 'aliquot_tag': 'ALQ_fb05d507', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00221.RNA-Seq.genomic.T.hg38 C3N-00221 LSCC RNA-Seq tumor CPT0111150007 6503e0bf-25e4-4e05-a754-9200a5dbb4cb.rna_seq.genomic.gdc_realn.bam 11892176654 BAM genomic harmonized CPTAC3 36cd84d8-f047-4ca0-9e0d-e25233b56544 504c42f382c32a56752c0ff98569a380 { 'aliquot_tag': 'ALQ_f8b989d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00221.RNA-Seq.R1_L004.A C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 180926_UNC31-K00269_0155_AHWN7WBBXX_CAGATC_S13_L004_R1_001.fastq.gz 3863695326 FASTQ R1_L004 unaligned CPTAC3 d7426049-340e-4148-b92c-fe817878b2bd d0299da69eb3b4835d05ec240cab5b4c { 'aliquot_tag': 'ALQ_fb05d507', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00221.RNA-Seq.R1_L005.T C3N-00221 LSCC RNA-Seq tumor CPT0111150007 180925_UNC32-K00270_0122_BHWNF7BBXX_CGATGT_S18_L005_R1_001.fastq.gz 5366348432 FASTQ R1_L005 unaligned CPTAC3 24921c1c-441e-413e-9e56-46774caf94dc 89e2d333ecd1009dc58fd83fb90ec096 { 'aliquot_tag': 'ALQ_f8b989d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00221.RNA-Seq.R2_L004.A C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 180926_UNC31-K00269_0155_AHWN7WBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4084446309 FASTQ R2_L004 unaligned CPTAC3 8758b923-ae9a-4e57-b528-e25449795afe 330c9414cbf88230e40001543ac4997c { 'aliquot_tag': 'ALQ_fb05d507', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00221.RNA-Seq.R2_L005.T C3N-00221 LSCC RNA-Seq tumor CPT0111150007 180925_UNC32-K00270_0122_BHWNF7BBXX_CGATGT_S18_L005_R2_001.fastq.gz 5575959558 FASTQ R2_L005 unaligned CPTAC3 34b62585-10bc-48c6-a1c6-807c613a848b 765dc94adb665b235fa6e39fa4b87672 { 'aliquot_tag': 'ALQ_f8b989d2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00221.RNA-Seq.genomic.T.hg38 C3N-00221 LSCC RNA-Seq tumor CPT0111150007 6503e0bf-25e4-4e05-a754-9200a5dbb4cb.rna_seq.genomic.gdc_realn.bam 11892176654 BAM genomic harmonized CPTAC3 80b50854-a43e-4b4c-8e04-cdea2867962e 504c42f382c32a56752c0ff98569a380 { 'aliquot_tag': 'ALQ_f8b989d2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00221.RNA-Seq.R1_L004.A C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 180926_UNC31-K00269_0155_AHWN7WBBXX_CAGATC_S13_L004_R1_001.fastq.gz 3863695326 FASTQ R1_L004 unaligned CPTAC3 d7426049-340e-4148-b92c-fe817878b2bd d0299da69eb3b4835d05ec240cab5b4c { 'aliquot_tag': 'ALQ_fb05d507', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-00221.RNA-Seq.R1_L005.T C3N-00221 LSCC RNA-Seq tumor CPT0111150007 180925_UNC32-K00270_0122_BHWNF7BBXX_CGATGT_S18_L005_R1_001.fastq.gz 5366348432 FASTQ R1_L005 unaligned CPTAC3 24921c1c-441e-413e-9e56-46774caf94dc 89e2d333ecd1009dc58fd83fb90ec096 { 'aliquot_tag': 'ALQ_f8b989d2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00221.RNA-Seq.R2_L004.A C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 180926_UNC31-K00269_0155_AHWN7WBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4084446309 FASTQ R2_L004 unaligned CPTAC3 8758b923-ae9a-4e57-b528-e25449795afe 330c9414cbf88230e40001543ac4997c { 'aliquot_tag': 'ALQ_fb05d507', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-00221.RNA-Seq.R2_L005.T C3N-00221 LSCC RNA-Seq tumor CPT0111150007 180925_UNC32-K00270_0122_BHWNF7BBXX_CGATGT_S18_L005_R2_001.fastq.gz 5575959558 FASTQ R2_L005 unaligned CPTAC3 34b62585-10bc-48c6-a1c6-807c613a848b 765dc94adb665b235fa6e39fa4b87672 { 'aliquot_tag': 'ALQ_f8b989d2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00221.RNA-Seq.transcriptome.A.hg38 C3N-00221 LSCC RNA-Seq tissue_normal CPT0111000007 b3775e45-a320-4a62-be86-ff27811e6e07.rna_seq.transcriptome.gdc_realn.bam 9730753317 BAM transcriptome harmonized CPTAC3 486b8f88-d5b2-4224-96fe-ec16e81dfb60 e7af194a1430e880812375a0d6a3c260 { 'aliquot_tag': 'ALQ_fb05d507', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00221.RNA-Seq.transcriptome.T.hg38 C3N-00221 LSCC RNA-Seq tumor CPT0111150007 6503e0bf-25e4-4e05-a754-9200a5dbb4cb.rna_seq.transcriptome.gdc_realn.bam 14798215729 BAM transcriptome harmonized CPTAC3 2a753e6b-225f-4b7b-b5d3-8967b405a409 d6c0f65b79687bd8b490133d001cb041 { 'aliquot_tag': 'ALQ_f8b989d2', 'gdc_sample_type': 'Primary Tumor' } C3N-00221.WGS.N C3N-00221 LSCC WGS blood_normal CPT0111280005 CPT0111280005.WholeGenome.RP-1303.bam 61779866202 BAM aligned CPTAC3 2b3dbae5-cdd9-429d-866e-a01dada219ee 95b90eb8921b0d01081ec5d7bcf6eccc { 'aliquot_tag': 'ALQ_68b35ee1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19419,11 +21187,11 @@ C3N-00223.miRNA-Seq.T.hg38 C3N-00223 LUAD miRNA-Seq tumor CPT0111300006 b2f9e69e C3N-00223.RNA-Seq.chimeric.A.hg38 C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 7bd40e53-63d4-47df-8db7-65afdc9e6f2e.rna_seq.chimeric.gdc_realn.bam 128922673 BAM chimeric harmonized CPTAC3 fcdf3c9f-7fdb-456d-9424-550a8840e251 53ba60458e725d3f544a600db1563afa { 'aliquot_tag': 'ALQ_27e3ec46', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00223.RNA-Seq.chimeric.T.hg38 C3N-00223 LUAD RNA-Seq tumor CPT0111300006 ccbfad24-1288-4698-8ddb-99ac07d5ca9c.rna_seq.chimeric.gdc_realn.bam 34032739 BAM chimeric harmonized CPTAC3 a952d868-aa52-41b9-ac2d-1f52b4ed34d1 fe56c81926bb4ff0015cfa1559d1ed58 { 'aliquot_tag': 'ALQ_a96973f', 'gdc_sample_type': 'Primary Tumor' } C3N-00223.RNA-Seq.genomic.A.hg38 C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 7bd40e53-63d4-47df-8db7-65afdc9e6f2e.rna_seq.genomic.gdc_realn.bam 8812843488 BAM genomic harmonized CPTAC3 1d4968d5-5213-4e8a-aa08-073b2f2aa53d bfab9fc87dd7e150e59ba27172b27480 { 'aliquot_tag': 'ALQ_27e3ec46', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00223.RNA-Seq.genomic.T.hg38 C3N-00223 LUAD RNA-Seq tumor CPT0111300006 ccbfad24-1288-4698-8ddb-99ac07d5ca9c.rna_seq.genomic.gdc_realn.bam 7875255772 BAM genomic harmonized CPTAC3 f2e0f93e-ba0e-45ea-907e-7ade7a804fe4 a4c4e35e738a2323dd3ee670c85adf1b { 'aliquot_tag': 'ALQ_a96973f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00223.RNA-Seq.R1_L005.T C3N-00223 LUAD RNA-Seq tumor CPT0111300006 171109_UNC31-K00269_0090_AHLHNWBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 3768036132 FASTQ R1_L005 unaligned CPTAC3 25949a10-491a-44e9-a687-7fbf243a8c4e 564d7afc79df3c773aad95f1ce0dfce1 { 'aliquot_tag': 'ALQ_a96973f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00223.RNA-Seq.R1_L007.A C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L007_R1_001.fastq.gz 4341284490 FASTQ R1_L007 unaligned CPTAC3 69b9dcc6-bffb-4130-b35f-97ab47799f07 8c6dc3849593959f6d4dd36b7265ffb1 { 'aliquot_tag': 'ALQ_27e3ec46', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00223.RNA-Seq.R2_L005.T C3N-00223 LUAD RNA-Seq tumor CPT0111300006 171109_UNC31-K00269_0090_AHLHNWBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4132119545 FASTQ R2_L005 unaligned CPTAC3 3a1999f7-a95a-4af4-934a-b1e6f6e41f65 fc2fc01168797e0b76ba96e887a1674a { 'aliquot_tag': 'ALQ_a96973f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00223.RNA-Seq.R2_L007.A C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L007_R2_001.fastq.gz 4769840822 FASTQ R2_L007 unaligned CPTAC3 f4ffc662-bc2c-4bfc-8829-d9428de3eec9 c124f2cd567b69e2fb739479b26fba44 { 'aliquot_tag': 'ALQ_27e3ec46', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00223.RNA-Seq.genomic.T.hg38 C3N-00223 LUAD RNA-Seq tumor CPT0111300006 ccbfad24-1288-4698-8ddb-99ac07d5ca9c.rna_seq.genomic.gdc_realn.bam 7875255772 BAM genomic harmonized CPTAC3 8b1f50d0-3155-47c2-b412-7d72eece65eb a4c4e35e738a2323dd3ee670c85adf1b { 'aliquot_tag': 'ALQ_a96973f', 'gdc_sample_type': 'Primary Tumor' } +C3N-00223.RNA-Seq.R1_L005.T C3N-00223 LUAD RNA-Seq tumor CPT0111300006 171109_UNC31-K00269_0090_AHLHNWBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 3768036132 FASTQ R1_L005 unaligned CPTAC3 25949a10-491a-44e9-a687-7fbf243a8c4e 564d7afc79df3c773aad95f1ce0dfce1 { 'aliquot_tag': 'ALQ_a96973f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00223.RNA-Seq.R1_L007.A C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L007_R1_001.fastq.gz 4341284490 FASTQ R1_L007 unaligned CPTAC3 69b9dcc6-bffb-4130-b35f-97ab47799f07 8c6dc3849593959f6d4dd36b7265ffb1 { 'aliquot_tag': 'ALQ_27e3ec46', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-00223.RNA-Seq.R2_L005.T C3N-00223 LUAD RNA-Seq tumor CPT0111300006 171109_UNC31-K00269_0090_AHLHNWBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4132119545 FASTQ R2_L005 unaligned CPTAC3 3a1999f7-a95a-4af4-934a-b1e6f6e41f65 fc2fc01168797e0b76ba96e887a1674a { 'aliquot_tag': 'ALQ_a96973f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00223.RNA-Seq.R2_L007.A C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACAGTG_S1_L007_R2_001.fastq.gz 4769840822 FASTQ R2_L007 unaligned CPTAC3 f4ffc662-bc2c-4bfc-8829-d9428de3eec9 c124f2cd567b69e2fb739479b26fba44 { 'aliquot_tag': 'ALQ_27e3ec46', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-00223.RNA-Seq.transcriptome.A.hg38 C3N-00223 LUAD RNA-Seq tissue_normal CPT0111480006 7bd40e53-63d4-47df-8db7-65afdc9e6f2e.rna_seq.transcriptome.gdc_realn.bam 10295378135 BAM transcriptome harmonized CPTAC3 34ff5e4f-217b-41c7-8dc8-c4740c9958a9 f011cb2a7cc63bc2c8aab9768d1d8d3e { 'aliquot_tag': 'ALQ_27e3ec46', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00223.RNA-Seq.transcriptome.T.hg38 C3N-00223 LUAD RNA-Seq tumor CPT0111300006 ccbfad24-1288-4698-8ddb-99ac07d5ca9c.rna_seq.transcriptome.gdc_realn.bam 10640529966 BAM transcriptome harmonized CPTAC3 008165be-8a6e-4842-8339-3768bdc493e3 c5cf8e65a10efcf40c935782c72ea9f0 { 'aliquot_tag': 'ALQ_a96973f', 'gdc_sample_type': 'Primary Tumor' } C3N-00223.WGS.A C3N-00223 LUAD WGS tissue_normal CPT0111480008 CPT0111480008.WholeGenome.RP-1303.bam 59129725734 BAM aligned CPTAC3 1d3e718d-79fe-407c-ad1c-559e55c0ed8d e28618022be4bde98cd6e80428c3fa29 { 'aliquot_tag': 'ALQ_c05bc141', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19444,16 +21212,16 @@ C3N-00229.miRNA-Seq.A C3N-00229 LSCC miRNA-Seq tissue_normal CPT0265050006 20051 C3N-00229.miRNA-Seq.A.hg38 C3N-00229 LSCC miRNA-Seq tissue_normal CPT0265050006 b67e6b05-dfc7-4bc2-b25f-68e7209ce895_mirnaseq_gdc_realn.bam 293326928 BAM harmonized CPTAC3 b028a022-7c8c-4d72-b51f-c12de341cd50 679d0ba4d70878e55f1336cbebd9eb5d { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00229.miRNA-Seq.T C3N-00229 LSCC miRNA-Seq tumor CPT0265030014 200224_UNC31-K00269_0267_AHC722BBXY_CAGATC_S7_L006_R1_001.unaln.bam 228953679 BAM unaligned CPTAC3 80a1bf47-0ae4-42b2-ba81-3ed0c0aeabb5 70abf93e7cb8eccd7f0f3b8e5dbdc00b { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor' } C3N-00229.miRNA-Seq.T.hg38 C3N-00229 LSCC miRNA-Seq tumor CPT0265030014 fd36351b-3c82-4790-be02-c5484c91023f_mirnaseq_gdc_realn.bam 253984696 BAM harmonized CPTAC3 0f394c15-6f22-4742-8df8-65bd92fe6109 ffa2d63c4443884e12efe8aa5d12fa32 { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00229.RNA-Seq.chimeric.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 ab1ccaf1-b9c9-4c84-b94c-70a88b5e3f1a.rna_seq.chimeric.gdc_realn.bam 45599234 BAM chimeric harmonized CPTAC3 d1626e9c-4a04-40bd-9de5-e4e13c16b92e e045eda3a84f1cc18536bd1d49038fbd { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00229.RNA-Seq.chimeric.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 bf44e8cc-9cf2-4454-b724-b29ca8851caa.rna_seq.chimeric.gdc_realn.bam 76982793 BAM chimeric harmonized CPTAC3 4e7837db-1c42-4338-88b1-6ce7fc5b83ad a555279d5c02fbc7ad53286d5d094d93 { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00229.RNA-Seq.genomic.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 ab1ccaf1-b9c9-4c84-b94c-70a88b5e3f1a.rna_seq.genomic.gdc_realn.bam 6464714367 BAM genomic harmonized CPTAC3 f7b71d41-747f-4606-b96e-fe2a68fc824c bb929f77129249285eedca9050764579 { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00229.RNA-Seq.genomic.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 bf44e8cc-9cf2-4454-b724-b29ca8851caa.rna_seq.genomic.gdc_realn.bam 7136268090 BAM genomic harmonized CPTAC3 2c4e7b84-bc04-4661-a451-ccc7b5d1b637 706e595cefa04d7089c1f4ae7fcf5720 { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00229.RNA-Seq.R1_L002.A C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 200505_UNC31-K00269_0277_AHGFKNBBXY_AGGCAGAG-AGAATGCC_S5_L002_R1_001.fastq.gz 3143893620 FASTQ R1_L002 unaligned CPTAC3 8eecdbc0-da13-49cc-a077-e2156c6345b9 2fefe50689b1dc213a21f809a01baec3 { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00229.RNA-Seq.R1_L006.T C3N-00229 LSCC RNA-Seq tumor CPT0265030014 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGGCAGAG-AGAATGCC_S23_L006_R1_001.fastq.gz 3474700033 FASTQ R1_L006 unaligned CPTAC3 91099a98-a5b3-4b2f-8098-d7355358e842 c115ef2c4dee20505df5f3bb54d25b85 { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00229.RNA-Seq.R2_L002.A C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 200505_UNC31-K00269_0277_AHGFKNBBXY_AGGCAGAG-AGAATGCC_S5_L002_R2_001.fastq.gz 3560014410 FASTQ R2_L002 unaligned CPTAC3 8e84d510-4d25-470e-ac2b-3f852ec50a8b 94a133f50f254943af6e75b7f70dd610 { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00229.RNA-Seq.R2_L006.T C3N-00229 LSCC RNA-Seq tumor CPT0265030014 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGGCAGAG-AGAATGCC_S23_L006_R2_001.fastq.gz 3667028811 FASTQ R2_L006 unaligned CPTAC3 821addd9-374c-45f2-ac22-5e9d70d73183 5b7ff3b9f7d833181f7a0a54bddec434 { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00229.RNA-Seq.transcriptome.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 ab1ccaf1-b9c9-4c84-b94c-70a88b5e3f1a.rna_seq.transcriptome.gdc_realn.bam 6597123010 BAM transcriptome harmonized CPTAC3 b8515965-ac50-4520-a8f5-93f9d8d71d23 9d025dd9af27f2475da0f1f843e317a3 { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00229.RNA-Seq.transcriptome.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 bf44e8cc-9cf2-4454-b724-b29ca8851caa.rna_seq.transcriptome.gdc_realn.bam 8135716918 BAM transcriptome harmonized CPTAC3 0f6fe9c0-c40b-4e21-919d-fdedc4aa8309 443f0b7699a9ed70abf825b4d4ce4725 { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00229.RNA-Seq.chimeric.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 bf4cdbcb-996f-4d6e-9b30-0034e6dc3558.rna_seq.chimeric.gdc_realn.bam 45584502 BAM chimeric harmonized CPTAC3 aa6bccdb-9b53-4a57-89b2-61251274b090 694734524f8ca1c3835548d1754a6cbd { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00229.RNA-Seq.chimeric.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 341038bf-3edf-4f94-9ed8-f9fe445f233b.rna_seq.chimeric.gdc_realn.bam 76957484 BAM chimeric harmonized CPTAC3 9abfafbc-37d3-4dd0-8039-bf03a19ed55a ff1a8eaa2240e95c1dad2e76e7f06f2d { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00229.RNA-Seq.genomic.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 bf4cdbcb-996f-4d6e-9b30-0034e6dc3558.rna_seq.genomic.gdc_realn.bam 6465757341 BAM genomic harmonized CPTAC3 78b52602-8768-4be9-9139-ef994c249213 b1beb0dd594bb7be9100f606ee031806 { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00229.RNA-Seq.genomic.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 341038bf-3edf-4f94-9ed8-f9fe445f233b.rna_seq.genomic.gdc_realn.bam 7137662010 BAM genomic harmonized CPTAC3 c127a1c0-fb5a-4115-92b0-1f1984e0d54a e14025834df866155cdbd5b08bf54ec9 { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00229.RNA-Seq.R1_L002.A C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 200505_UNC31-K00269_0277_AHGFKNBBXY_AGGCAGAG-AGAATGCC_S5_L002_R1_001.fastq.gz 3143893620 FASTQ R1_L002 unaligned CPTAC3 8eecdbc0-da13-49cc-a077-e2156c6345b9 2fefe50689b1dc213a21f809a01baec3 { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-00229.RNA-Seq.R1_L006.T C3N-00229 LSCC RNA-Seq tumor CPT0265030014 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGGCAGAG-AGAATGCC_S23_L006_R1_001.fastq.gz 3474700033 FASTQ R1_L006 unaligned CPTAC3 91099a98-a5b3-4b2f-8098-d7355358e842 c115ef2c4dee20505df5f3bb54d25b85 { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00229.RNA-Seq.R2_L002.A C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 200505_UNC31-K00269_0277_AHGFKNBBXY_AGGCAGAG-AGAATGCC_S5_L002_R2_001.fastq.gz 3560014410 FASTQ R2_L002 unaligned CPTAC3 8e84d510-4d25-470e-ac2b-3f852ec50a8b 94a133f50f254943af6e75b7f70dd610 { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-00229.RNA-Seq.R2_L006.T C3N-00229 LSCC RNA-Seq tumor CPT0265030014 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGGCAGAG-AGAATGCC_S23_L006_R2_001.fastq.gz 3667028811 FASTQ R2_L006 unaligned CPTAC3 821addd9-374c-45f2-ac22-5e9d70d73183 5b7ff3b9f7d833181f7a0a54bddec434 { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-00229.RNA-Seq.transcriptome.A.hg38 C3N-00229 LSCC RNA-Seq tissue_normal CPT0265050006 bf4cdbcb-996f-4d6e-9b30-0034e6dc3558.rna_seq.transcriptome.gdc_realn.bam 7550616478 BAM transcriptome harmonized CPTAC3 160ef33d-39d0-41c4-adea-dc1ba00f68e1 455382728ae335fb7e8bbd746a216eca { 'aliquot_tag': 'ALQ_83e57b2e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00229.RNA-Seq.transcriptome.T.hg38 C3N-00229 LSCC RNA-Seq tumor CPT0265030014 341038bf-3edf-4f94-9ed8-f9fe445f233b.rna_seq.transcriptome.gdc_realn.bam 9238550533 BAM transcriptome harmonized CPTAC3 7bde526d-5029-4d6a-9658-b5857fff749a 8ca4bd7be493057ca7897b9fe3813b3f { 'aliquot_tag': 'ALQ_fbb0dee3', 'gdc_sample_type': 'Primary Tumor' } C3N-00229.WGS.N C3N-00229 LSCC WGS blood_normal CPT0264000002 CPT0264000002.WholeGenome.RP-2158.bam 21559294645 BAM aligned CPTAC3 df5c6b48-3839-4e83-aaf2-66228c4fade8 610f6ce9d95246865e9fcde02c7f3004 { 'aliquot_tag': 'ALQ_ea1f3bf3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00229.WGS.N.hg38 C3N-00229 LSCC WGS blood_normal CPT0264000002 985912ac-ab9b-4695-9325-45f735634db5_wgs_gdc_realn.bam 63957077050 BAM harmonized CPTAC3 a5240ef5-a117-493a-90b1-be4f9d0de625 3617d0c5d742fbfe21e5054a7fd9e75d { 'aliquot_tag': 'ALQ_ea1f3bf3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00229.WGS.T C3N-00229 LSCC WGS tumor CPT0265030011 CPT0265030011.WholeGenome.RP-2158.bam 24630818287 BAM aligned CPTAC3 a478952a-3305-4f8c-8ef0-c733eb86cbdf 074ae3a323eb1cc6873297eaf95f3e3c { 'aliquot_tag': 'ALQ_8bda2a6c', 'gdc_sample_type': 'Primary Tumor' } @@ -19474,10 +21242,10 @@ C3N-00242.RNA-Seq.chimeric.A.hg38 C3N-00242 CCRCC RNA-Seq tissue_normal CPT00144 C3N-00242.RNA-Seq.chimeric.T.hg38 C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 a9d508c9-2b4d-47a6-8118-7a6480d6d542.rna_seq.chimeric.gdc_realn.bam 87206536 BAM chimeric harmonized CPTAC3 511da4b0-ae5c-4a4c-a286-08e40790596c 9a5976a01ad222c954aadc662b0ddad2 { 'aliquot_tag': 'ALQ_6d25437e', 'gdc_sample_type': 'Primary Tumor' } C3N-00242.RNA-Seq.genomic.A.hg38 C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 0cf9aca5-930b-4ddb-a5b9-bc637ef7d35c.rna_seq.genomic.gdc_realn.bam 8774579812 BAM genomic harmonized CPTAC3 fc5f9fe1-074c-41e0-81d6-c9612fa4ab9f b426d9cb41e1e1b8e3351ece1eff9fe9 { 'aliquot_tag': 'ALQ_e0f04073', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00242.RNA-Seq.genomic.T.hg38 C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 a9d508c9-2b4d-47a6-8118-7a6480d6d542.rna_seq.genomic.gdc_realn.bam 8066868087 BAM genomic harmonized CPTAC3 7c35a2db-4e60-4c1d-9140-bdc9f4c3d7ce a1360de2daf2234078b3f975f11af270 { 'aliquot_tag': 'ALQ_6d25437e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00242.RNA-Seq.R1_L003.T C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4039192946 FASTQ R1_L003 unaligned CPTAC3 c4e63c50-ca0a-4d7b-b997-b2d8b773c1cf 2a94684296778b6ca06260418016e7f4 { 'aliquot_tag': 'ALQ_6d25437e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00242.RNA-Seq.R1_L006.A C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 171208_UNC32-K00270_0071_BHN7K5BBXX_TAGCTT_S53_L006_R1_001.fastq.gz 4228846850 FASTQ R1_L006 unaligned CPTAC3 f8182e74-736d-47e4-b14d-983de722206c 74a81860313faf1f7f059136d22f6b7f { 'aliquot_tag': 'ALQ_e0f04073', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00242.RNA-Seq.R2_L003.T C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4290781502 FASTQ R2_L003 unaligned CPTAC3 e6af5a8d-aabc-4d70-8c3d-2af0f96340d6 f131fb9afca7f6253f1a5310f4737613 { 'aliquot_tag': 'ALQ_6d25437e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00242.RNA-Seq.R2_L006.A C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 171208_UNC32-K00270_0071_BHN7K5BBXX_TAGCTT_S53_L006_R2_001.fastq.gz 4511464994 FASTQ R2_L006 unaligned CPTAC3 2edb4bbc-a66c-4384-b108-04369d71eb3b bf256bb9664d70b7a1861fe8e7408556 { 'aliquot_tag': 'ALQ_e0f04073', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00242.RNA-Seq.R1_L003.T C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4039192946 FASTQ R1_L003 unaligned CPTAC3 c4e63c50-ca0a-4d7b-b997-b2d8b773c1cf 2a94684296778b6ca06260418016e7f4 { 'aliquot_tag': 'ALQ_6d25437e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00242.RNA-Seq.R1_L006.A C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 171208_UNC32-K00270_0071_BHN7K5BBXX_TAGCTT_S53_L006_R1_001.fastq.gz 4228846850 FASTQ R1_L006 unaligned CPTAC3 f8182e74-736d-47e4-b14d-983de722206c 74a81860313faf1f7f059136d22f6b7f { 'aliquot_tag': 'ALQ_e0f04073', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00242.RNA-Seq.R2_L003.T C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 171011_UNC31-K00269_0086_AHLJLCBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4290781502 FASTQ R2_L003 unaligned CPTAC3 e6af5a8d-aabc-4d70-8c3d-2af0f96340d6 f131fb9afca7f6253f1a5310f4737613 { 'aliquot_tag': 'ALQ_6d25437e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00242.RNA-Seq.R2_L006.A C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 171208_UNC32-K00270_0071_BHN7K5BBXX_TAGCTT_S53_L006_R2_001.fastq.gz 4511464994 FASTQ R2_L006 unaligned CPTAC3 2edb4bbc-a66c-4384-b108-04369d71eb3b bf256bb9664d70b7a1861fe8e7408556 { 'aliquot_tag': 'ALQ_e0f04073', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-00242.RNA-Seq.transcriptome.A.hg38 C3N-00242 CCRCC RNA-Seq tissue_normal CPT0014470006 0cf9aca5-930b-4ddb-a5b9-bc637ef7d35c.rna_seq.transcriptome.gdc_realn.bam 10592316854 BAM transcriptome harmonized CPTAC3 0a44d2bc-53a1-459d-ab54-d7e456075145 951bc9df98e91c1513f74539bf9f75ac { 'aliquot_tag': 'ALQ_e0f04073', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00242.RNA-Seq.transcriptome.T.hg38 C3N-00242 CCRCC RNA-Seq tumor CPT0014450014 a9d508c9-2b4d-47a6-8118-7a6480d6d542.rna_seq.transcriptome.gdc_realn.bam 8378730527 BAM transcriptome harmonized CPTAC3 2f9d0f0f-81df-4e18-90f9-af9aae6aa314 353db8ffef9e77cdb29f6941f8d1b47a { 'aliquot_tag': 'ALQ_6d25437e', 'gdc_sample_type': 'Primary Tumor' } C3N-00242.WGS.A C3N-00242 CCRCC WGS tissue_normal CPT0014470009 CPT0014470009.WholeGenome.RP-1303.bam 67297555501 BAM aligned CPTAC3 3fb31b8e-27ff-4ac5-b468-ee42a26bfd72 59775f284fe11a5ae7973bae1b68b1e4 { 'aliquot_tag': 'ALQ_704f5de2', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19500,16 +21268,16 @@ C3N-00243.miRNA-Seq.A C3N-00243 CCRCC miRNA-Seq tissue_normal CPT0025470009 2101 C3N-00243.miRNA-Seq.A.hg38 C3N-00243 CCRCC miRNA-Seq tissue_normal CPT0025470009 8ff198f4-2288-4a1e-81c9-2ffc92fdeb49_mirnaseq_gdc_realn.bam 293557477 BAM harmonized CPTAC3 798417f5-b4b5-4a12-9013-71a29a709208 0130106b04a5f38d5a29cda8b0470681 { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00243.miRNA-Seq.T C3N-00243 CCRCC miRNA-Seq tumor CPT0025450011 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCCCGA_S36_L003_R1_001.unaln.bam 244420160 BAM unaligned CPTAC3 dc77754a-ef6b-46f9-ba1d-12855d3565b4 17105b2a9a43db37e80e87dbefe24cc3 { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor' } C3N-00243.miRNA-Seq.T.hg38 C3N-00243 CCRCC miRNA-Seq tumor CPT0025450011 d28374fb-757b-4d35-9c6d-56994655fe87_mirnaseq_gdc_realn.bam 257647490 BAM harmonized CPTAC3 de112439-7a1b-4d33-aa31-21700e86bc56 481695f9ee91400f11b0a73ba56cbcf6 { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00243.RNA-Seq.chimeric.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 72f35ece-adda-48d4-9a64-97b7704d667b.rna_seq.chimeric.gdc_realn.bam 195844296 BAM chimeric harmonized CPTAC3 1dbeeac0-df09-48af-854c-b6501e89cd25 c82f70dae580c70b02df271aa87d6d1f { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00243.RNA-Seq.chimeric.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 05c394ae-939b-41c3-a288-08bfb892824a.rna_seq.chimeric.gdc_realn.bam 291032637 BAM chimeric harmonized CPTAC3 ebaf32b2-da29-48fc-b3dd-88e8488d2f9c 24ee67e321866d5e3fbf3044385fcc68 { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00243.RNA-Seq.genomic.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 72f35ece-adda-48d4-9a64-97b7704d667b.rna_seq.genomic.gdc_realn.bam 8815671381 BAM genomic harmonized CPTAC3 cfca1012-992e-4e93-9707-ecd03ce12c63 144416987d195c81b1b6aea1d4a4d926 { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00243.RNA-Seq.genomic.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 05c394ae-939b-41c3-a288-08bfb892824a.rna_seq.genomic.gdc_realn.bam 10011768272 BAM genomic harmonized CPTAC3 28eb6557-5648-4164-beb8-91022ad56391 820d8b10952881392656170664317cbe { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00243.RNA-Seq.R1_L004.T C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 210105_UNC32-K00270_0268_AHK7HMBBXY_TGGTGGCA-TCCTGTAA_S13_L004_R1_001.fastq.gz 4807995996 FASTQ R1_L004 unaligned CPTAC3 7ce66ed4-6d18-4200-93fe-dff02c0346be 74c6dcb5cd8b4953e097aef2b42e13c8 { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00243.RNA-Seq.R1_L006.A C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 210105_UNC32-K00270_0268_AHK7HMBBXY_ACCTTGGC-GGCCTCAT_S18_L006_R1_001.fastq.gz 4067950812 FASTQ R1_L006 unaligned CPTAC3 f0085fcc-00ef-4eec-a502-59604bb40dbd 6f992f0d3dac5be4d62f06ec239bf98a { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00243.RNA-Seq.R2_L004.T C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 210105_UNC32-K00270_0268_AHK7HMBBXY_TGGTGGCA-TCCTGTAA_S13_L004_R2_001.fastq.gz 5420245351 FASTQ R2_L004 unaligned CPTAC3 fa6b449a-3faf-41c2-84e4-787f4d198935 8d8f2507da020b97af89472d41496212 { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00243.RNA-Seq.R2_L006.A C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 210105_UNC32-K00270_0268_AHK7HMBBXY_ACCTTGGC-GGCCTCAT_S18_L006_R2_001.fastq.gz 4661631472 FASTQ R2_L006 unaligned CPTAC3 d3f055d2-0497-4669-8214-a0064deab02b 918da60c98a2e17f8af0f396c57f5221 { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00243.RNA-Seq.transcriptome.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 72f35ece-adda-48d4-9a64-97b7704d667b.rna_seq.transcriptome.gdc_realn.bam 10833175213 BAM transcriptome harmonized CPTAC3 3bd1fa70-fa12-4a23-8b21-8984234826c9 733cd1944a9ad57ae93ce67639edad69 { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00243.RNA-Seq.transcriptome.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 05c394ae-939b-41c3-a288-08bfb892824a.rna_seq.transcriptome.gdc_realn.bam 9754641528 BAM transcriptome harmonized CPTAC3 768f19c2-aa43-478a-9c57-c7af27c7ebaf 0b4e09a1dfad4064c100c49e7bbc2b7d { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00243.RNA-Seq.chimeric.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 10441855-966b-4627-b486-09b07947d016.rna_seq.chimeric.gdc_realn.bam 195854409 BAM chimeric harmonized CPTAC3 ee3c91e6-b013-417a-bd3a-bde7ee9764a3 13ca687f9c548132639bd14e7c2867c7 { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00243.RNA-Seq.chimeric.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 e53cec85-3a48-4403-8e99-56ec36f2547d.rna_seq.chimeric.gdc_realn.bam 291023075 BAM chimeric harmonized CPTAC3 ecbe35ee-d651-41ce-a8bb-db1f625e75b2 059b62158b9f57744180323aaaac818d { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00243.RNA-Seq.genomic.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 10441855-966b-4627-b486-09b07947d016.rna_seq.genomic.gdc_realn.bam 8824786855 BAM genomic harmonized CPTAC3 95b7c4d3-4716-4d42-9b48-7747bb5382da 5df9cac416ed711701b930ffd4fecd62 { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00243.RNA-Seq.genomic.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 e53cec85-3a48-4403-8e99-56ec36f2547d.rna_seq.genomic.gdc_realn.bam 10016903043 BAM genomic harmonized CPTAC3 fb12f71d-6e87-4938-8500-18f7c2210aa4 95d3c25133eb295238773da1ec240438 { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00243.RNA-Seq.R1_L004.T C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 210105_UNC32-K00270_0268_AHK7HMBBXY_TGGTGGCA-TCCTGTAA_S13_L004_R1_001.fastq.gz 4807995996 FASTQ R1_L004 unaligned CPTAC3 7ce66ed4-6d18-4200-93fe-dff02c0346be 74c6dcb5cd8b4953e097aef2b42e13c8 { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00243.RNA-Seq.R1_L006.A C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 210105_UNC32-K00270_0268_AHK7HMBBXY_ACCTTGGC-GGCCTCAT_S18_L006_R1_001.fastq.gz 4067950812 FASTQ R1_L006 unaligned CPTAC3 f0085fcc-00ef-4eec-a502-59604bb40dbd 6f992f0d3dac5be4d62f06ec239bf98a { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00243.RNA-Seq.R2_L004.T C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 210105_UNC32-K00270_0268_AHK7HMBBXY_TGGTGGCA-TCCTGTAA_S13_L004_R2_001.fastq.gz 5420245351 FASTQ R2_L004 unaligned CPTAC3 fa6b449a-3faf-41c2-84e4-787f4d198935 8d8f2507da020b97af89472d41496212 { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00243.RNA-Seq.R2_L006.A C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 210105_UNC32-K00270_0268_AHK7HMBBXY_ACCTTGGC-GGCCTCAT_S18_L006_R2_001.fastq.gz 4661631472 FASTQ R2_L006 unaligned CPTAC3 d3f055d2-0497-4669-8214-a0064deab02b 918da60c98a2e17f8af0f396c57f5221 { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-00243.RNA-Seq.transcriptome.A.hg38 C3N-00243 CCRCC RNA-Seq tissue_normal CPT0025470009 10441855-966b-4627-b486-09b07947d016.rna_seq.transcriptome.gdc_realn.bam 12511450432 BAM transcriptome harmonized CPTAC3 31e443e2-a424-4fe5-8c63-ad85a72457cd 7dfcc7f7be342b9a9a5e87140869d36f { 'aliquot_tag': 'ALQ_58b751b5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00243.RNA-Seq.transcriptome.T.hg38 C3N-00243 CCRCC RNA-Seq tumor CPT0025450011 e53cec85-3a48-4403-8e99-56ec36f2547d.rna_seq.transcriptome.gdc_realn.bam 11198685277 BAM transcriptome harmonized CPTAC3 5f2e67c9-ca67-4d49-87a9-53b419697a47 aca724cfdc43293c3614c92954a49b03 { 'aliquot_tag': 'ALQ_35b7bba6', 'gdc_sample_type': 'Primary Tumor' } C3N-00243.WGS.N C3N-00243 CCRCC WGS blood_normal CPT0028430002 CPT0028430002.WholeGenome.RP-2158.bam 21127475254 BAM aligned CPTAC3 1015a225-c765-42dc-9e16-3652d6ce1393 ae024e1d4a699f4aeba3ae8b8ca2f3d4 { 'aliquot_tag': 'ALQ_5b324f3d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00243.WGS.N.hg38 C3N-00243 CCRCC WGS blood_normal CPT0028430002 8af781f0-72e5-454a-afd7-466bec03c5f6_wgs_gdc_realn.bam 61282039234 BAM harmonized CPTAC3 949f29bb-92e9-48d6-93e0-3bcf6aad01d5 9d94b20d1940500bee2de09e3120e425 { 'aliquot_tag': 'ALQ_5b324f3d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00243.WGS.T C3N-00243 CCRCC WGS tumor CPT0025450009 CPT0025450009.WholeGenome.RP-2158.bam 38694686455 BAM aligned CPTAC3 6d53f3b8-0635-42e7-b9ae-af71e22c5be8 452d7fdb6d64bcd57c54c9790cf9ed25 { 'aliquot_tag': 'ALQ_227702d5', 'gdc_sample_type': 'Primary Tumor' } @@ -19530,12 +21298,12 @@ C3N-00244.miRNA-Seq.T C3N-00244 CCRCC miRNA-Seq tumor CPT0014370010 181113_UNC31 C3N-00244.miRNA-Seq.T.hg38 C3N-00244 CCRCC miRNA-Seq tumor CPT0014370010 cc99b8a5-66f1-4ac4-a902-9a6a17977941_mirnaseq_gdc_realn.bam 236636416 BAM harmonized CPTAC3 0f3d7a1b-45e2-436a-ad0c-a7a15230b762 9f4306b6088c31c99b2a4c8e3e2307dc { 'aliquot_tag': 'ALQ_d8de4bf', 'gdc_sample_type': 'Primary Tumor' } C3N-00244.RNA-Seq.chimeric.A.hg38 C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 3413da43-cfc2-4749-842f-12307ba18601.rna_seq.chimeric.gdc_realn.bam 81436318 BAM chimeric harmonized CPTAC3 1ca50c2c-03f2-40eb-8dc5-26bd0c8131e1 3f805c0af4101327042950ce1cef2c33 { 'aliquot_tag': 'ALQ_873523ab', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00244.RNA-Seq.chimeric.T.hg38 C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 c6a6e2f1-ab7b-4260-939d-260a81a1ef86.rna_seq.chimeric.gdc_realn.bam 82959984 BAM chimeric harmonized CPTAC3 864aa86e-7a46-45db-ab36-82995dd93a13 d01e4afdd9aa101e0c0e7570413174e7 { 'aliquot_tag': 'ALQ_d8de4bf', 'gdc_sample_type': 'Primary Tumor' } -C3N-00244.RNA-Seq.genomic.A.hg38 C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 3413da43-cfc2-4749-842f-12307ba18601.rna_seq.genomic.gdc_realn.bam 9525860464 BAM genomic harmonized CPTAC3 924dd384-8480-4725-bfca-677de4581cc4 94dcea3a077d3acc0e3f0e5a48297688 { 'aliquot_tag': 'ALQ_873523ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00244.RNA-Seq.genomic.T.hg38 C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 c6a6e2f1-ab7b-4260-939d-260a81a1ef86.rna_seq.genomic.gdc_realn.bam 6797456944 BAM genomic harmonized CPTAC3 4b673167-13b9-4802-a46b-cadd58c8c2ba 7db5fcbe39e973543fc4ad0957777798 { 'aliquot_tag': 'ALQ_d8de4bf', 'gdc_sample_type': 'Primary Tumor' } -C3N-00244.RNA-Seq.R1_L006.A C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L006_R1_001.fastq.gz 4473154983 FASTQ R1_L006 unaligned CPTAC3 ac55d6b5-d21e-4f30-bb31-a2c1b1fe3b85 7cb7cc4c1b5e61cac82ef4bd389ea51a { 'aliquot_tag': 'ALQ_873523ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00244.RNA-Seq.R1_L007.T C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 170818_UNC32-K00270_0050_AHL2FHBBXX_ACTTGA_S20_L007_R1_001.fastq.gz 3506612417 FASTQ R1_L007 unaligned CPTAC3 9eac52d5-7b2c-4f12-8710-c3698b38b316 d60c1d076d5d8eacf8d65256bf5e204d { 'aliquot_tag': 'ALQ_d8de4bf', 'gdc_sample_type': 'Primary Tumor' } -C3N-00244.RNA-Seq.R2_L006.A C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L006_R2_001.fastq.gz 4767352929 FASTQ R2_L006 unaligned CPTAC3 9405a470-4eaf-4991-b093-f7f8761a5d5f 329850d14a522032d47f95cab49071d3 { 'aliquot_tag': 'ALQ_873523ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00244.RNA-Seq.R2_L007.T C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 170818_UNC32-K00270_0050_AHL2FHBBXX_ACTTGA_S20_L007_R2_001.fastq.gz 3780716196 FASTQ R2_L007 unaligned CPTAC3 5d53b49e-4a14-46ee-96eb-bd0c21284c72 aa08fa8f3ade1c3e9085d85ca6616ca6 { 'aliquot_tag': 'ALQ_d8de4bf', 'gdc_sample_type': 'Primary Tumor' } +C3N-00244.RNA-Seq.genomic.A.hg38 C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 3413da43-cfc2-4749-842f-12307ba18601.rna_seq.genomic.gdc_realn.bam 9525860464 BAM genomic harmonized CPTAC3 2440691d-113a-4192-bfe4-b1545a9b80de 94dcea3a077d3acc0e3f0e5a48297688 { 'aliquot_tag': 'ALQ_873523ab', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00244.RNA-Seq.genomic.T.hg38 C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 c6a6e2f1-ab7b-4260-939d-260a81a1ef86.rna_seq.genomic.gdc_realn.bam 6797456944 BAM genomic harmonized CPTAC3 11d6b30f-d870-4f3c-b04d-a84c3717b2ef 7db5fcbe39e973543fc4ad0957777798 { 'aliquot_tag': 'ALQ_d8de4bf', 'gdc_sample_type': 'Primary Tumor' } +C3N-00244.RNA-Seq.R1_L006.A C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L006_R1_001.fastq.gz 4473154983 FASTQ R1_L006 unaligned CPTAC3 ac55d6b5-d21e-4f30-bb31-a2c1b1fe3b85 7cb7cc4c1b5e61cac82ef4bd389ea51a { 'aliquot_tag': 'ALQ_873523ab', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00244.RNA-Seq.R1_L007.T C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 170818_UNC32-K00270_0050_AHL2FHBBXX_ACTTGA_S20_L007_R1_001.fastq.gz 3506612417 FASTQ R1_L007 unaligned CPTAC3 9eac52d5-7b2c-4f12-8710-c3698b38b316 d60c1d076d5d8eacf8d65256bf5e204d { 'aliquot_tag': 'ALQ_d8de4bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00244.RNA-Seq.R2_L006.A C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 171208_UNC32-K00270_0071_BHN7K5BBXX_ACAGTG_S52_L006_R2_001.fastq.gz 4767352929 FASTQ R2_L006 unaligned CPTAC3 9405a470-4eaf-4991-b093-f7f8761a5d5f 329850d14a522032d47f95cab49071d3 { 'aliquot_tag': 'ALQ_873523ab', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-00244.RNA-Seq.R2_L007.T C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 170818_UNC32-K00270_0050_AHL2FHBBXX_ACTTGA_S20_L007_R2_001.fastq.gz 3780716196 FASTQ R2_L007 unaligned CPTAC3 5d53b49e-4a14-46ee-96eb-bd0c21284c72 aa08fa8f3ade1c3e9085d85ca6616ca6 { 'aliquot_tag': 'ALQ_d8de4bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00244.RNA-Seq.transcriptome.A.hg38 C3N-00244 CCRCC RNA-Seq tissue_normal CPT0014350006 3413da43-cfc2-4749-842f-12307ba18601.rna_seq.transcriptome.gdc_realn.bam 10887603401 BAM transcriptome harmonized CPTAC3 ae4a8f1f-401e-41fd-a6ab-6290b9d589cb dd8ee8aa14f721a35ac1d25bf28922fb { 'aliquot_tag': 'ALQ_873523ab', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00244.RNA-Seq.transcriptome.T.hg38 C3N-00244 CCRCC RNA-Seq tumor CPT0014370010 c6a6e2f1-ab7b-4260-939d-260a81a1ef86.rna_seq.transcriptome.gdc_realn.bam 10222792345 BAM transcriptome harmonized CPTAC3 e48ff784-c4b9-4252-9393-933b1a3443a4 1c304cc4d05b3d7c2736541d056eb4a9 { 'aliquot_tag': 'ALQ_d8de4bf', 'gdc_sample_type': 'Primary Tumor' } C3N-00244.WGS.A C3N-00244 CCRCC WGS tissue_normal CPT0014350009 CPT0014350009.WholeGenome.RP-1303.bam 69390189134 BAM aligned CPTAC3 678065a8-d1b5-4efe-b1cd-6ecb2a5fd99b 7e3c8c4a5f9bcdeac160faaa19d6737e { 'aliquot_tag': 'ALQ_178a3e3a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19556,8 +21324,8 @@ C3N-00246.miRNA-Seq.T C3N-00246 CCRCC miRNA-Seq tumor CPT0025580007 180924_UNC31 C3N-00246.miRNA-Seq.T.hg38 C3N-00246 CCRCC miRNA-Seq tumor CPT0025580007 2f30225a-252c-49a4-bfab-795419b17144_mirnaseq_gdc_realn.bam 226551421 BAM harmonized CPTAC3 1be2e2ba-84b7-46db-a02c-1b7fbd9989a0 a462d01d1128ac85e5be19e83e8a2514 { 'aliquot_tag': 'ALQ_f60338c6', 'gdc_sample_type': 'Primary Tumor' } C3N-00246.RNA-Seq.chimeric.T.hg38 C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 cf759ef2-c637-4d4c-b352-458eab5158db.rna_seq.chimeric.gdc_realn.bam 91790578 BAM chimeric harmonized CPTAC3 7a9d56e1-58af-4770-966c-9e5c2bab5d94 6f23a46010663120372fbc98e1e86a2e { 'aliquot_tag': 'ALQ_f60338c6', 'gdc_sample_type': 'Primary Tumor' } C3N-00246.RNA-Seq.genomic.T.hg38 C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 cf759ef2-c637-4d4c-b352-458eab5158db.rna_seq.genomic.gdc_realn.bam 8330219152 BAM genomic harmonized CPTAC3 f60201dc-bde3-43a2-9648-a49a58637e83 c563d0870cb61e0b875c858b37a20f41 { 'aliquot_tag': 'ALQ_f60338c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00246.RNA-Seq.R1_L002.T C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L002_R1_001.fastq.gz 4176841992 FASTQ R1_L002 unaligned CPTAC3 b2f5270b-e884-473e-bebb-fd293a7abe03 19fee323e47e03ac83da8ab1ba01fa48 { 'aliquot_tag': 'ALQ_f60338c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00246.RNA-Seq.R2_L002.T C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L002_R2_001.fastq.gz 4639218644 FASTQ R2_L002 unaligned CPTAC3 6c6faf26-b644-4903-8866-4153d141fead cdb7df58e4af7672c105bc74e78c5f1e { 'aliquot_tag': 'ALQ_f60338c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00246.RNA-Seq.R1_L002.T C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L002_R1_001.fastq.gz 4176841992 FASTQ R1_L002 unaligned CPTAC3 b2f5270b-e884-473e-bebb-fd293a7abe03 19fee323e47e03ac83da8ab1ba01fa48 { 'aliquot_tag': 'ALQ_f60338c6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00246.RNA-Seq.R2_L002.T C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L002_R2_001.fastq.gz 4639218644 FASTQ R2_L002 unaligned CPTAC3 6c6faf26-b644-4903-8866-4153d141fead cdb7df58e4af7672c105bc74e78c5f1e { 'aliquot_tag': 'ALQ_f60338c6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-00246.RNA-Seq.transcriptome.T.hg38 C3N-00246 CCRCC RNA-Seq tumor CPT0025580007 cf759ef2-c637-4d4c-b352-458eab5158db.rna_seq.transcriptome.gdc_realn.bam 11462655998 BAM transcriptome harmonized CPTAC3 30fb10d1-5c0d-471f-989a-be71d286541f 1efe4c25980617ee0f7a9aa556ffdc0a { 'aliquot_tag': 'ALQ_f60338c6', 'gdc_sample_type': 'Primary Tumor' } C3N-00246.WGS.N C3N-00246 CCRCC WGS blood_normal CPT0028450002 CPT0028450002.WholeGenome.RP-1303.bam 96839343963 BAM aligned CPTAC3 8a6339e1-e955-4f95-bf80-e4ab6086c165 2dd4508e37664e03ee2678414a843cb4 { 'aliquot_tag': 'ALQ_d472ba9d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00246.WGS.N.hg38 C3N-00246 CCRCC WGS blood_normal CPT0028450002 ec639b94-a29e-46b7-9b59-cf6dd07504c8_gdc_realn.bam 141378006084 BAM harmonized CPTAC3 5c9b3fd4-a694-4304-a7a6-0e84d4fa373e dac953abd8031b164214f863ce4454d7 { 'aliquot_tag': 'ALQ_d472ba9d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19572,9 +21340,9 @@ C3N-00247.MethArray.Red.T C3N-00247 LSCC Methylation Array tumor CPT0089880009 2 C3N-00247.miRNA-Seq.T C3N-00247 LSCC miRNA-Seq tumor CPT0089880006 180828_UNC32-K00270_0112_AHWTLNBBXX_CGATGT_S22_L006_R1_001.unaln.bam 245736563 BAM unaligned CPTAC3 3d2fd5d4-1621-4dbd-9302-0c1141616559 b57ce5e3edbff08049e163be48f6a8ee { 'aliquot_tag': 'ALQ_6bfa6d32', 'gdc_sample_type': 'Primary Tumor' } C3N-00247.miRNA-Seq.T.hg38 C3N-00247 LSCC miRNA-Seq tumor CPT0089880006 22061a48-0c26-47f0-84fa-2b885d820d5e_mirnaseq_gdc_realn.bam 275198600 BAM harmonized CPTAC3 d5e744a5-0b82-478a-adbf-77d9f8f75baa 2be369af4c9a75201b26850caead122d { 'aliquot_tag': 'ALQ_6bfa6d32', 'gdc_sample_type': 'Primary Tumor' } C3N-00247.RNA-Seq.chimeric.T.hg38 C3N-00247 LSCC RNA-Seq tumor CPT0089880006 6f6c6c8b-b4e4-4d5c-9174-56336a11189e.rna_seq.chimeric.gdc_realn.bam 34464699 BAM chimeric harmonized CPTAC3 3ec97893-eeea-4bb2-afb4-ba66453c1413 62c099ab8ab3a73c31e1e5e75a34955e { 'aliquot_tag': 'ALQ_6bfa6d32', 'gdc_sample_type': 'Primary Tumor' } -C3N-00247.RNA-Seq.genomic.T.hg38 C3N-00247 LSCC RNA-Seq tumor CPT0089880006 6f6c6c8b-b4e4-4d5c-9174-56336a11189e.rna_seq.genomic.gdc_realn.bam 10880454866 BAM genomic harmonized CPTAC3 0e7843b7-fbec-460f-9506-7beff157a918 d00c72dee855f231668b2758bb3de6c4 { 'aliquot_tag': 'ALQ_6bfa6d32', 'gdc_sample_type': 'Primary Tumor' } -C3N-00247.RNA-Seq.R1_L002.T C3N-00247 LSCC RNA-Seq tumor CPT0089880006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4417867260 FASTQ R1_L002 unaligned CPTAC3 93f35b19-4f58-4809-b52d-8be64c0beb5e 54469884efed6ccd09a529f93cd13595 { 'aliquot_tag': 'ALQ_6bfa6d32', 'gdc_sample_type': 'Primary Tumor' } -C3N-00247.RNA-Seq.R2_L002.T C3N-00247 LSCC RNA-Seq tumor CPT0089880006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4747219538 FASTQ R2_L002 unaligned CPTAC3 33c91fa1-de4a-4bb9-9071-fc89e343ac1b db0d5b35cce72a901bce98370ecfc56f { 'aliquot_tag': 'ALQ_6bfa6d32', 'gdc_sample_type': 'Primary Tumor' } +C3N-00247.RNA-Seq.genomic.T.hg38 C3N-00247 LSCC RNA-Seq tumor CPT0089880006 6f6c6c8b-b4e4-4d5c-9174-56336a11189e.rna_seq.genomic.gdc_realn.bam 10880454866 BAM genomic harmonized CPTAC3 4655fbfb-30da-4068-b059-a9ee5a3f70b0 d00c72dee855f231668b2758bb3de6c4 { 'aliquot_tag': 'ALQ_6bfa6d32', 'gdc_sample_type': 'Primary Tumor' } +C3N-00247.RNA-Seq.R1_L002.T C3N-00247 LSCC RNA-Seq tumor CPT0089880006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4417867260 FASTQ R1_L002 unaligned CPTAC3 93f35b19-4f58-4809-b52d-8be64c0beb5e 54469884efed6ccd09a529f93cd13595 { 'aliquot_tag': 'ALQ_6bfa6d32', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00247.RNA-Seq.R2_L002.T C3N-00247 LSCC RNA-Seq tumor CPT0089880006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4747219538 FASTQ R2_L002 unaligned CPTAC3 33c91fa1-de4a-4bb9-9071-fc89e343ac1b db0d5b35cce72a901bce98370ecfc56f { 'aliquot_tag': 'ALQ_6bfa6d32', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-00247.RNA-Seq.transcriptome.T.hg38 C3N-00247 LSCC RNA-Seq tumor CPT0089880006 6f6c6c8b-b4e4-4d5c-9174-56336a11189e.rna_seq.transcriptome.gdc_realn.bam 11070320028 BAM transcriptome harmonized CPTAC3 e94d2871-fab7-47d2-9d57-9ef7c4bebea8 ff1c5aca318e89d585ec7aae01b78e31 { 'aliquot_tag': 'ALQ_6bfa6d32', 'gdc_sample_type': 'Primary Tumor' } C3N-00247.WGS.N C3N-00247 LSCC WGS blood_normal CPT0091400002 CPT0091400002.WholeGenome.RP-1303.bam 61758632552 BAM aligned CPTAC3 7c44725b-4fe8-4f7e-91a6-2fcda7105bc9 3052c8cd4a9c6c264333bacb0ffa3d31 { 'aliquot_tag': 'ALQ_d4606c68', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00247.WGS.N.hg38 C3N-00247 LSCC WGS blood_normal CPT0091400002 864d0707-63aa-439f-8fcc-cbe77d2235bb_wgs_gdc_realn.bam 89697207318 BAM harmonized CPTAC3 53d1890c-8b29-487f-a73a-5bf0c6ef901d 81a58dca1676b2ceddb3385122b92544 { 'aliquot_tag': 'ALQ_d4606c68', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19595,9 +21363,9 @@ C3N-00249.MethArray.Red.A C3N-00249 PDA Methylation Array tissue_normal CPT00257 C3N-00249.miRNA-Seq.T C3N-00249 PDA miRNA-Seq tumor CPT0025750006 180924_UNC31-K00269_0154_AHWTMLBBXX_GTCCGC_S13_L001_R1_001.unaln.bam 235376558 BAM unaligned CPTAC3 ef93cf21-8cc6-41ad-a7d6-ecc4466c3c3f c21deef9ae25d8c8e52a4a1663b52e40 { 'aliquot_tag': 'ALQ_345c6dea', 'gdc_sample_type': 'Primary Tumor' } C3N-00249.miRNA-Seq.T.hg38 C3N-00249 PDA miRNA-Seq tumor CPT0025750006 c39fb7e7-f6f6-4d87-a064-e8aedde885cb_mirnaseq_gdc_realn.bam 257255576 BAM harmonized CPTAC3 c97c42bc-a767-4336-8cf3-466491f10cbb 63743813547fc5336334aad07db9d685 { 'aliquot_tag': 'ALQ_345c6dea', 'gdc_sample_type': 'Primary Tumor' } C3N-00249.RNA-Seq.chimeric.T.hg38 C3N-00249 PDA RNA-Seq tumor CPT0025750006 432c7d8b-13df-4c49-96c3-99779c33f945.rna_seq.chimeric.gdc_realn.bam 65054376 BAM chimeric harmonized CPTAC3 c64603bb-b025-4b21-add1-88ac4da445dc 236258c815602c16c8ca167c73deab3c { 'aliquot_tag': 'ALQ_345c6dea', 'gdc_sample_type': 'Primary Tumor' } -C3N-00249.RNA-Seq.genomic.T.hg38 C3N-00249 PDA RNA-Seq tumor CPT0025750006 432c7d8b-13df-4c49-96c3-99779c33f945.rna_seq.genomic.gdc_realn.bam 8811542154 BAM genomic harmonized CPTAC3 fa057bd4-31d5-4b8b-9150-c534ada071ec 6bc7be89b0cdbeeb11daec6f125db32e { 'aliquot_tag': 'ALQ_345c6dea', 'gdc_sample_type': 'Primary Tumor' } -C3N-00249.RNA-Seq.R1_L002.T C3N-00249 PDA RNA-Seq tumor CPT0025750006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3904396163 FASTQ R1_L002 unaligned CPTAC3 610773b7-6a19-49c2-8b12-bb58d27184b3 5085cd9d8e2d1d9cce7cffe1f7336a6e { 'aliquot_tag': 'ALQ_345c6dea', 'gdc_sample_type': 'Primary Tumor' } -C3N-00249.RNA-Seq.R2_L002.T C3N-00249 PDA RNA-Seq tumor CPT0025750006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4385829043 FASTQ R2_L002 unaligned CPTAC3 5853ca64-9b14-49cb-9c49-18595e36626f 129cc9a23bcf1f55bae991e3a9e85e8e { 'aliquot_tag': 'ALQ_345c6dea', 'gdc_sample_type': 'Primary Tumor' } +C3N-00249.RNA-Seq.genomic.T.hg38 C3N-00249 PDA RNA-Seq tumor CPT0025750006 432c7d8b-13df-4c49-96c3-99779c33f945.rna_seq.genomic.gdc_realn.bam 8811542154 BAM genomic harmonized CPTAC3 3e04bab8-c966-4f0d-9cae-c11969a94c07 6bc7be89b0cdbeeb11daec6f125db32e { 'aliquot_tag': 'ALQ_345c6dea', 'gdc_sample_type': 'Primary Tumor' } +C3N-00249.RNA-Seq.R1_L002.T C3N-00249 PDA RNA-Seq tumor CPT0025750006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L002_R1_001.fastq.gz 3904396163 FASTQ R1_L002 unaligned CPTAC3 610773b7-6a19-49c2-8b12-bb58d27184b3 5085cd9d8e2d1d9cce7cffe1f7336a6e { 'aliquot_tag': 'ALQ_345c6dea', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00249.RNA-Seq.R2_L002.T C3N-00249 PDA RNA-Seq tumor CPT0025750006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L002_R2_001.fastq.gz 4385829043 FASTQ R2_L002 unaligned CPTAC3 5853ca64-9b14-49cb-9c49-18595e36626f 129cc9a23bcf1f55bae991e3a9e85e8e { 'aliquot_tag': 'ALQ_345c6dea', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-00249.RNA-Seq.transcriptome.T.hg38 C3N-00249 PDA RNA-Seq tumor CPT0025750006 432c7d8b-13df-4c49-96c3-99779c33f945.rna_seq.transcriptome.gdc_realn.bam 11054554153 BAM transcriptome harmonized CPTAC3 cbcf2ea6-d930-48e0-bde0-89030af1ad37 b1c94383af6bb02e34892c50747671e8 { 'aliquot_tag': 'ALQ_345c6dea', 'gdc_sample_type': 'Primary Tumor' } C3N-00249.Targeted.T C3N-00249 PDA Targeted Sequencing tumor CPT0025750009_1 CPT0025750009_1.CustomSelection.RP-1303.PDO-18786.bam 4427050184 BAM aligned CPTAC3 a57a8577-1997-4e79-91b1-50836db5dd22 1670883dea0628ef854c38d499517bf2 { 'aliquot_tag': 'ALQ_b1ea26bc', 'gdc_sample_type': 'Primary Tumor' } C3N-00249.Targeted.T.hg38 C3N-00249 PDA Targeted Sequencing tumor CPT0025750009_1 d54a354f-a303-4689-9f1b-fba719fd79ef_targetedsequencing_gdc_realn.bam 6191598262 BAM harmonized CPTAC3 5b20eb74-ebc1-4234-a739-4a8ddb97a8c5 c6072636f1508fb450c63f9a238dfa78 { 'aliquot_tag': 'ALQ_b1ea26bc', 'gdc_sample_type': 'Primary Tumor' } @@ -19622,11 +21390,11 @@ C3N-00293.miRNA-Seq.T.hg38 C3N-00293 LUAD miRNA-Seq tumor CPT0008410006 11e70783 C3N-00293.RNA-Seq.chimeric.A.hg38 C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 d92cdba8-77a4-41a6-a1d0-a5bbd73ae69d.rna_seq.chimeric.gdc_realn.bam 122224168 BAM chimeric harmonized CPTAC3 0b390525-5d7c-45a5-8abb-387f73bf38d1 3520c0ae8a70cf40f3b853db240574c5 { 'aliquot_tag': 'ALQ_231aa5e9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00293.RNA-Seq.chimeric.T.hg38 C3N-00293 LUAD RNA-Seq tumor CPT0008410006 3bcb649b-1b7f-437c-ba83-8265b3a196f4.rna_seq.chimeric.gdc_realn.bam 85147575 BAM chimeric harmonized CPTAC3 d59b6ea1-1baf-4d8e-a7a9-d80fffb268c8 3a96902c616a8b5f86c2b8d573a0cdcc { 'aliquot_tag': 'ALQ_64badf39', 'gdc_sample_type': 'Primary Tumor' } C3N-00293.RNA-Seq.genomic.A.hg38 C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 d92cdba8-77a4-41a6-a1d0-a5bbd73ae69d.rna_seq.genomic.gdc_realn.bam 7884877876 BAM genomic harmonized CPTAC3 1c30782d-091e-458f-9e36-2cf7504e2890 3c3aa69e5a9e871ff9c1e323397bfae6 { 'aliquot_tag': 'ALQ_231aa5e9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00293.RNA-Seq.genomic.T.hg38 C3N-00293 LUAD RNA-Seq tumor CPT0008410006 3bcb649b-1b7f-437c-ba83-8265b3a196f4.rna_seq.genomic.gdc_realn.bam 12196891163 BAM genomic harmonized CPTAC3 6366cf77-3c2c-4493-812e-71afe4c8c006 473ef8624c4684129f442b2a4c256b5c { 'aliquot_tag': 'ALQ_64badf39', 'gdc_sample_type': 'Primary Tumor' } -C3N-00293.RNA-Seq.R1_L001.A C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L001_R1_001.fastq.gz 3409416057 FASTQ R1_L001 unaligned CPTAC3 d7c1bd83-f32c-4f75-ae4f-5a57e89e4cd4 9076e6f615c33aeb50f3096f764631f1 { 'aliquot_tag': 'ALQ_231aa5e9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00293.RNA-Seq.R1_L003.T C3N-00293 LUAD RNA-Seq tumor CPT0008410006 170823_UNC31-K00269_0075_AHLCW5BBXX_TGACCA_S11_L003_R1_001.fastq.gz 5249740125 FASTQ R1_L003 unaligned CPTAC3 cc06dcca-deb2-4ebf-81d9-b61b91ab84e2 e5c01d834dab610a694bcc17a38591dc { 'aliquot_tag': 'ALQ_64badf39', 'gdc_sample_type': 'Primary Tumor' } -C3N-00293.RNA-Seq.R2_L001.A C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L001_R2_001.fastq.gz 3765583991 FASTQ R2_L001 unaligned CPTAC3 f9707f05-8ee0-49dd-8cc8-6758d528d4e8 81af7bb53568b6f6fd84eddbb1f7ff0c { 'aliquot_tag': 'ALQ_231aa5e9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00293.RNA-Seq.R2_L003.T C3N-00293 LUAD RNA-Seq tumor CPT0008410006 170823_UNC31-K00269_0075_AHLCW5BBXX_TGACCA_S11_L003_R2_001.fastq.gz 5574681099 FASTQ R2_L003 unaligned CPTAC3 5734e054-6f57-45a6-8cab-6bfd3e4946e3 5907358b82b1a772c071fffb38181d1b { 'aliquot_tag': 'ALQ_64badf39', 'gdc_sample_type': 'Primary Tumor' } +C3N-00293.RNA-Seq.genomic.T.hg38 C3N-00293 LUAD RNA-Seq tumor CPT0008410006 3bcb649b-1b7f-437c-ba83-8265b3a196f4.rna_seq.genomic.gdc_realn.bam 12196891163 BAM genomic harmonized CPTAC3 45d98a59-5f21-49be-b41e-76d39e2ab701 473ef8624c4684129f442b2a4c256b5c { 'aliquot_tag': 'ALQ_64badf39', 'gdc_sample_type': 'Primary Tumor' } +C3N-00293.RNA-Seq.R1_L001.A C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L001_R1_001.fastq.gz 3409416057 FASTQ R1_L001 unaligned CPTAC3 d7c1bd83-f32c-4f75-ae4f-5a57e89e4cd4 9076e6f615c33aeb50f3096f764631f1 { 'aliquot_tag': 'ALQ_231aa5e9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-00293.RNA-Seq.R1_L003.T C3N-00293 LUAD RNA-Seq tumor CPT0008410006 170823_UNC31-K00269_0075_AHLCW5BBXX_TGACCA_S11_L003_R1_001.fastq.gz 5249740125 FASTQ R1_L003 unaligned CPTAC3 cc06dcca-deb2-4ebf-81d9-b61b91ab84e2 e5c01d834dab610a694bcc17a38591dc { 'aliquot_tag': 'ALQ_64badf39', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00293.RNA-Seq.R2_L001.A C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L001_R2_001.fastq.gz 3765583991 FASTQ R2_L001 unaligned CPTAC3 f9707f05-8ee0-49dd-8cc8-6758d528d4e8 81af7bb53568b6f6fd84eddbb1f7ff0c { 'aliquot_tag': 'ALQ_231aa5e9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-00293.RNA-Seq.R2_L003.T C3N-00293 LUAD RNA-Seq tumor CPT0008410006 170823_UNC31-K00269_0075_AHLCW5BBXX_TGACCA_S11_L003_R2_001.fastq.gz 5574681099 FASTQ R2_L003 unaligned CPTAC3 5734e054-6f57-45a6-8cab-6bfd3e4946e3 5907358b82b1a772c071fffb38181d1b { 'aliquot_tag': 'ALQ_64badf39', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-00293.RNA-Seq.transcriptome.A.hg38 C3N-00293 LUAD RNA-Seq tissue_normal CPT0008420006 d92cdba8-77a4-41a6-a1d0-a5bbd73ae69d.rna_seq.transcriptome.gdc_realn.bam 7449514604 BAM transcriptome harmonized CPTAC3 ffa0b027-6578-4ff7-8f88-1c2e20c76ad6 0ae8c48b99cf7760ba7524eb31ec73ce { 'aliquot_tag': 'ALQ_231aa5e9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00293.RNA-Seq.transcriptome.T.hg38 C3N-00293 LUAD RNA-Seq tumor CPT0008410006 3bcb649b-1b7f-437c-ba83-8265b3a196f4.rna_seq.transcriptome.gdc_realn.bam 11540988777 BAM transcriptome harmonized CPTAC3 66365b1e-d0f7-474f-89cb-3d8505e5266b ceac54693ab29c66d744cd591c5942f5 { 'aliquot_tag': 'ALQ_64badf39', 'gdc_sample_type': 'Primary Tumor' } C3N-00293.WGS.A C3N-00293 LUAD WGS tissue_normal CPT0008420009 CPT0008420009.WholeGenome.RP-1303.bam 60226399163 BAM aligned CPTAC3 654c9698-5b5d-46f3-a507-3f75384a4e30 197afd192a799ad721a85eb8b2ec632d { 'aliquot_tag': 'ALQ_b3a5b878', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19646,9 +21414,9 @@ C3N-00294.MethArray.Red.T C3N-00294 LUAD Methylation Array tumor CPT0008450006 2 C3N-00294.miRNA-Seq.T C3N-00294 LUAD miRNA-Seq tumor CPT0008450009 181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L003_R1_001.unaln.bam 222126586 BAM unaligned CPTAC3 8c2fc9d6-921d-4690-b270-10baabddd784 e18cbdc7a61eec5c91bab85ff23c0522 { 'aliquot_tag': 'ALQ_1856468', 'gdc_sample_type': 'Primary Tumor' } C3N-00294.miRNA-Seq.T.hg38 C3N-00294 LUAD miRNA-Seq tumor CPT0008450009 141c19a6-44d6-43d5-9b0c-2436d3a0eaee_mirnaseq_gdc_realn.bam 244490797 BAM harmonized CPTAC3 62586c13-9287-4914-9674-66607f871e24 c1486bac6575b7dd97c5586bc228013d { 'aliquot_tag': 'ALQ_1856468', 'gdc_sample_type': 'Primary Tumor' } C3N-00294.RNA-Seq.chimeric.T.hg38 C3N-00294 LUAD RNA-Seq tumor CPT0008450009 2b10c9fa-0b05-4689-ae6f-5246853009ae.rna_seq.chimeric.gdc_realn.bam 85402503 BAM chimeric harmonized CPTAC3 21c7110b-6874-48b5-bcf9-302b7fbaecfc 8d9e46c911f5da963ea00e204e023c51 { 'aliquot_tag': 'ALQ_1856468', 'gdc_sample_type': 'Primary Tumor' } -C3N-00294.RNA-Seq.genomic.T.hg38 C3N-00294 LUAD RNA-Seq tumor CPT0008450009 2b10c9fa-0b05-4689-ae6f-5246853009ae.rna_seq.genomic.gdc_realn.bam 6356952783 BAM genomic harmonized CPTAC3 39e6b7b1-03c4-450e-8744-d108d103d0d1 5a8e6f76758d3fe13c919f50a47185f4 { 'aliquot_tag': 'ALQ_1856468', 'gdc_sample_type': 'Primary Tumor' } -C3N-00294.RNA-Seq.R1_L006.T C3N-00294 LUAD RNA-Seq tumor CPT0008450009 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L006_R1_001.fastq.gz 3047799893 FASTQ R1_L006 unaligned CPTAC3 8b874fe7-02a2-4b8b-ae9c-0e7c74e25df3 e67a727fc3b8e8a989b46dec5e7c3146 { 'aliquot_tag': 'ALQ_1856468', 'gdc_sample_type': 'Primary Tumor' } -C3N-00294.RNA-Seq.R2_L006.T C3N-00294 LUAD RNA-Seq tumor CPT0008450009 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L006_R2_001.fastq.gz 3434909117 FASTQ R2_L006 unaligned CPTAC3 38f54b19-88c4-4c88-97d5-c42d04821642 be99e6ae4849fc950d3ed76d54723d09 { 'aliquot_tag': 'ALQ_1856468', 'gdc_sample_type': 'Primary Tumor' } +C3N-00294.RNA-Seq.genomic.T.hg38 C3N-00294 LUAD RNA-Seq tumor CPT0008450009 2b10c9fa-0b05-4689-ae6f-5246853009ae.rna_seq.genomic.gdc_realn.bam 6356952783 BAM genomic harmonized CPTAC3 e07a0fad-8ad8-4c36-95f7-e7f455d321a8 5a8e6f76758d3fe13c919f50a47185f4 { 'aliquot_tag': 'ALQ_1856468', 'gdc_sample_type': 'Primary Tumor' } +C3N-00294.RNA-Seq.R1_L006.T C3N-00294 LUAD RNA-Seq tumor CPT0008450009 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L006_R1_001.fastq.gz 3047799893 FASTQ R1_L006 unaligned CPTAC3 8b874fe7-02a2-4b8b-ae9c-0e7c74e25df3 e67a727fc3b8e8a989b46dec5e7c3146 { 'aliquot_tag': 'ALQ_1856468', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00294.RNA-Seq.R2_L006.T C3N-00294 LUAD RNA-Seq tumor CPT0008450009 170802_UNC31-K00269_0072_AHK3GVBBXX_TTAGGC_S8_L006_R2_001.fastq.gz 3434909117 FASTQ R2_L006 unaligned CPTAC3 38f54b19-88c4-4c88-97d5-c42d04821642 be99e6ae4849fc950d3ed76d54723d09 { 'aliquot_tag': 'ALQ_1856468', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-00294.RNA-Seq.transcriptome.T.hg38 C3N-00294 LUAD RNA-Seq tumor CPT0008450009 2b10c9fa-0b05-4689-ae6f-5246853009ae.rna_seq.transcriptome.gdc_realn.bam 8129769764 BAM transcriptome harmonized CPTAC3 8de41fe9-56a6-4b60-b933-0eec0be97124 87c5668e99a43b1daa0ef2fca335b81a { 'aliquot_tag': 'ALQ_1856468', 'gdc_sample_type': 'Primary Tumor' } C3N-00294.Targeted.T C3N-00294 LUAD Targeted Sequencing tumor CPT0008450006 CPT0008450006.CustomSelection.RP-1303.PDO-18786.bam 4674990457 BAM aligned CPTAC3 7f4b8e6e-1a71-413e-8d38-eff24dfdaa0d b1c9f9e8a379633e7775551c9383cc66 { 'aliquot_tag': 'ALQ_913a79f9', 'gdc_sample_type': 'Primary Tumor' } C3N-00294.Targeted.T.hg38 C3N-00294 LUAD Targeted Sequencing tumor CPT0008450006 93912139-ca7d-426f-9b58-00db34bac3c8_targetedsequencing_gdc_realn.bam 6560853419 BAM harmonized CPTAC3 c746d72d-506a-422d-a664-2d23b5ea045e e2e4b59cf03ace769e537731326dbd41 { 'aliquot_tag': 'ALQ_913a79f9', 'gdc_sample_type': 'Primary Tumor' } @@ -19666,8 +21434,8 @@ C3N-00295.miRNA-Seq.T C3N-00295 HNSCC miRNA-Seq tumor CPT0008520013 181012_UNC32 C3N-00295.miRNA-Seq.T.hg38 C3N-00295 HNSCC miRNA-Seq tumor CPT0008520013 d8660498-643c-43d6-9c86-c2579697a18a_mirnaseq_gdc_realn.bam 254493016 BAM harmonized CPTAC3 7831544a-6d4c-47c9-884d-d96326b39507 2d2884c75ad91dcfd9fae4e9ea35ab1a { 'aliquot_tag': 'ALQ_8137b382', 'gdc_sample_type': 'Primary Tumor' } C3N-00295.RNA-Seq.chimeric.T.hg38 C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 cbe420f8-431d-4fea-9b55-9f405f834ace.rna_seq.chimeric.gdc_realn.bam 67050641 BAM chimeric harmonized CPTAC3 3d93f948-d5c7-4cf5-807b-02b198b4619d 40ba2f1487ed7ed8e0cc2c9cc42485a3 { 'aliquot_tag': 'ALQ_8137b382', 'gdc_sample_type': 'Primary Tumor' } C3N-00295.RNA-Seq.genomic.T.hg38 C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 cbe420f8-431d-4fea-9b55-9f405f834ace.rna_seq.genomic.gdc_realn.bam 9731604181 BAM genomic harmonized CPTAC3 9326aef9-6227-43f8-b4ef-6f1f17cc6944 aaae26f7b27267be126c5c43c5acfc65 { 'aliquot_tag': 'ALQ_8137b382', 'gdc_sample_type': 'Primary Tumor' } -C3N-00295.RNA-Seq.R1_L008.T C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L008_R1_001.fastq.gz 3863941490 FASTQ R1_L008 unaligned CPTAC3 1c982cc8-17a7-4850-b250-c0e26fa6da6b a19c3d99de0080b72f957f97578dc762 { 'aliquot_tag': 'ALQ_8137b382', 'gdc_sample_type': 'Primary Tumor' } -C3N-00295.RNA-Seq.R2_L008.T C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L008_R2_001.fastq.gz 4154250558 FASTQ R2_L008 unaligned CPTAC3 761b2689-7ca3-4037-a135-4767f1822400 a9f98980271c457e9e480320f8c21811 { 'aliquot_tag': 'ALQ_8137b382', 'gdc_sample_type': 'Primary Tumor' } +C3N-00295.RNA-Seq.R1_L008.T C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L008_R1_001.fastq.gz 3863941490 FASTQ R1_L008 unaligned CPTAC3 1c982cc8-17a7-4850-b250-c0e26fa6da6b a19c3d99de0080b72f957f97578dc762 { 'aliquot_tag': 'ALQ_8137b382', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00295.RNA-Seq.R2_L008.T C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 170802_UNC31-K00269_0072_AHK3GVBBXX_TGACCA_S7_L008_R2_001.fastq.gz 4154250558 FASTQ R2_L008 unaligned CPTAC3 761b2689-7ca3-4037-a135-4767f1822400 a9f98980271c457e9e480320f8c21811 { 'aliquot_tag': 'ALQ_8137b382', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00295.RNA-Seq.transcriptome.T.hg38 C3N-00295 HNSCC RNA-Seq tumor CPT0008520013 cbe420f8-431d-4fea-9b55-9f405f834ace.rna_seq.transcriptome.gdc_realn.bam 9790173534 BAM transcriptome harmonized CPTAC3 a3c85ed3-89d1-40ee-840a-eb8394386beb c54011783f747d4f7244e127af5a68d4 { 'aliquot_tag': 'ALQ_8137b382', 'gdc_sample_type': 'Primary Tumor' } C3N-00295.WGS.N C3N-00295 HNSCC WGS blood_normal CPT0008550002 CPT0008550002.WholeGenome.RP-1303.bam 68769407089 BAM aligned CPTAC3 d85f9b46-5452-46ab-84a6-5a4ec7d7a44d 1bcfee755ceef2269d5778b7b8e85fb2 { 'aliquot_tag': 'ALQ_5d0b6e45', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00295.WGS.N.hg38 C3N-00295 HNSCC WGS blood_normal CPT0008550002 3a76fc90-18b6-4046-9e9b-feac9408b617_gdc_realn.bam 99621106246 BAM harmonized CPTAC3 3a61ca3a-8449-478d-9bec-ad78a9eaa34c 77f5350a7946d2be03677b49275f4d83 { 'aliquot_tag': 'ALQ_5d0b6e45', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19682,9 +21450,9 @@ C3N-00297.MethArray.Red.T C3N-00297 HNSCC Methylation Array tumor CPT0011130011 C3N-00297.miRNA-Seq.T C3N-00297 HNSCC miRNA-Seq tumor CPT0011130008 190508_UNC31-K00269_0215_BH7FYKBBXY_TCGGCA_S48_L004_R1_001.unaln.bam 160723775 BAM unaligned CPTAC3 88604bda-2ef3-4732-ae5a-cca21e153275 1b29b478ca13026ccf50abb65b1a8cc7 { 'aliquot_tag': 'ALQ_f03d75a0', 'gdc_sample_type': 'Primary Tumor' } C3N-00297.miRNA-Seq.T.hg38 C3N-00297 HNSCC miRNA-Seq tumor CPT0011130008 89633866-2352-4cbd-951b-5745206fd0af_mirnaseq_gdc_realn.bam 178151690 BAM harmonized CPTAC3 5965bafc-7cd2-433d-aca0-bb71b838d928 8490b6bd8648331213cbc5e4f9e15f77 { 'aliquot_tag': 'ALQ_f03d75a0', 'gdc_sample_type': 'Primary Tumor' } C3N-00297.RNA-Seq.chimeric.T.hg38 C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 915aac13-b396-486a-bd41-493d682a6113.rna_seq.chimeric.gdc_realn.bam 50000977 BAM chimeric harmonized CPTAC3 e84c6fbe-01b9-404b-9265-5f4666ca3d6f b45e90b1fc6b378b5c894563a7dd73ae { 'aliquot_tag': 'ALQ_f03d75a0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00297.RNA-Seq.genomic.T.hg38 C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 915aac13-b396-486a-bd41-493d682a6113.rna_seq.genomic.gdc_realn.bam 7251377139 BAM genomic harmonized CPTAC3 ec91d149-b49f-4f61-8af6-bfacfb5af29a ad94040697094f3b515994defaa7cc03 { 'aliquot_tag': 'ALQ_f03d75a0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00297.RNA-Seq.R1_L002.T C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L002_R1_001.fastq.gz 3051374895 FASTQ R1_L002 unaligned CPTAC3 a3704d21-499b-4477-a72d-1a72523ec932 47d744add5412f4ab28b0a8f79d44e96 { 'aliquot_tag': 'ALQ_f03d75a0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00297.RNA-Seq.R2_L002.T C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L002_R2_001.fastq.gz 3283338741 FASTQ R2_L002 unaligned CPTAC3 4bd92b8d-2088-4e14-90e0-55776a4fd580 1f097bbd6f8e99e69a88475860f57e9e { 'aliquot_tag': 'ALQ_f03d75a0', 'gdc_sample_type': 'Primary Tumor' } +C3N-00297.RNA-Seq.genomic.T.hg38 C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 915aac13-b396-486a-bd41-493d682a6113.rna_seq.genomic.gdc_realn.bam 7251377139 BAM genomic harmonized CPTAC3 4346ca17-72bb-4eb9-a055-f490b9548c8c ad94040697094f3b515994defaa7cc03 { 'aliquot_tag': 'ALQ_f03d75a0', 'gdc_sample_type': 'Primary Tumor' } +C3N-00297.RNA-Seq.R1_L002.T C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L002_R1_001.fastq.gz 3051374895 FASTQ R1_L002 unaligned CPTAC3 a3704d21-499b-4477-a72d-1a72523ec932 47d744add5412f4ab28b0a8f79d44e96 { 'aliquot_tag': 'ALQ_f03d75a0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00297.RNA-Seq.R2_L002.T C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 170823_UNC31-K00269_0075_AHLCW5BBXX_ACTTGA_S6_L002_R2_001.fastq.gz 3283338741 FASTQ R2_L002 unaligned CPTAC3 4bd92b8d-2088-4e14-90e0-55776a4fd580 1f097bbd6f8e99e69a88475860f57e9e { 'aliquot_tag': 'ALQ_f03d75a0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-00297.RNA-Seq.transcriptome.T.hg38 C3N-00297 HNSCC RNA-Seq tumor CPT0011130008 915aac13-b396-486a-bd41-493d682a6113.rna_seq.transcriptome.gdc_realn.bam 8431304728 BAM transcriptome harmonized CPTAC3 f164b620-0ae8-46ce-88a1-42f15875bb54 5d640f5ebce2ff28982f8572d1d33a3e { 'aliquot_tag': 'ALQ_f03d75a0', 'gdc_sample_type': 'Primary Tumor' } C3N-00297.WGS.N C3N-00297 HNSCC WGS blood_normal CPT0011220002 CPT0011220002.WholeGenome.RP-1303.bam 76589993105 BAM aligned CPTAC3 1b3e6358-5503-4b43-aced-e2ee4e3db77c f5393c7f6e9e6f2566266d653238c362 { 'aliquot_tag': 'ALQ_ab1cc7a0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00297.WGS.N.hg38 C3N-00297 HNSCC WGS blood_normal CPT0011220002 45660f8b-82d7-4a42-a1b6-9f3e418134d5_gdc_realn.bam 113431061234 BAM harmonized CPTAC3 347b4933-c795-412b-822a-9aa47c137237 76ce0cd257660beb3f69a2ce7718b069 { 'aliquot_tag': 'ALQ_ab1cc7a0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19699,9 +21467,9 @@ C3N-00299.MethArray.Red.T C3N-00299 HNSCC Methylation Array tumor CPT0008630006 C3N-00299.miRNA-Seq.T C3N-00299 HNSCC miRNA-Seq tumor CPT0008630009 181119_UNC31-K00269_0165_AH27WCBBXY_CCAACA_S12_L005_R1_001.unaln.bam 217779779 BAM unaligned CPTAC3 403926f0-859f-4f5e-8812-5939368cbff5 e22d4c703766ee313a2bd1c932a8003b { 'aliquot_tag': 'ALQ_c30d30c3', 'gdc_sample_type': 'Primary Tumor' } C3N-00299.miRNA-Seq.T.hg38 C3N-00299 HNSCC miRNA-Seq tumor CPT0008630009 7f775d33-ead4-4cf8-adeb-93c838408f77_mirnaseq_gdc_realn.bam 242506303 BAM harmonized CPTAC3 d9d6ca4d-b41c-412f-abf7-f30bc78ef6b6 d0ad482d78007bec4130e15e85349577 { 'aliquot_tag': 'ALQ_c30d30c3', 'gdc_sample_type': 'Primary Tumor' } C3N-00299.RNA-Seq.chimeric.T.hg38 C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 eacd4976-8bb2-4c4c-817d-61cbf926be88.rna_seq.chimeric.gdc_realn.bam 79114765 BAM chimeric harmonized CPTAC3 17240db2-707e-430b-9125-cb25ec6732b3 66c9eb30b7816f8f7454b96b6d0fddcf { 'aliquot_tag': 'ALQ_c30d30c3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00299.RNA-Seq.genomic.T.hg38 C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 eacd4976-8bb2-4c4c-817d-61cbf926be88.rna_seq.genomic.gdc_realn.bam 7884943547 BAM genomic harmonized CPTAC3 989f3d4d-7da4-4632-8ea1-242d7d8b7709 c59b04f7825d6f52a283c7d578574d31 { 'aliquot_tag': 'ALQ_c30d30c3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00299.RNA-Seq.R1_L008.T C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L008_R1_001.fastq.gz 3766132773 FASTQ R1_L008 unaligned CPTAC3 94cda123-843d-496d-ad34-4ada42f543f6 a4da99520d99f8b19aa1ba252f041cc5 { 'aliquot_tag': 'ALQ_c30d30c3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00299.RNA-Seq.R2_L008.T C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L008_R2_001.fastq.gz 4094657090 FASTQ R2_L008 unaligned CPTAC3 9ea5625c-20dd-48b6-a2d9-e11d3c268c26 a45b1c4881403bab84a06b91f9bfc8ff { 'aliquot_tag': 'ALQ_c30d30c3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00299.RNA-Seq.genomic.T.hg38 C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 eacd4976-8bb2-4c4c-817d-61cbf926be88.rna_seq.genomic.gdc_realn.bam 7884943547 BAM genomic harmonized CPTAC3 d8b6f430-225f-4a57-b806-63087dfdf27c c59b04f7825d6f52a283c7d578574d31 { 'aliquot_tag': 'ALQ_c30d30c3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00299.RNA-Seq.R1_L008.T C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L008_R1_001.fastq.gz 3766132773 FASTQ R1_L008 unaligned CPTAC3 94cda123-843d-496d-ad34-4ada42f543f6 a4da99520d99f8b19aa1ba252f041cc5 { 'aliquot_tag': 'ALQ_c30d30c3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00299.RNA-Seq.R2_L008.T C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 170802_UNC31-K00269_0072_AHK3GVBBXX_ACAGTG_S3_L008_R2_001.fastq.gz 4094657090 FASTQ R2_L008 unaligned CPTAC3 9ea5625c-20dd-48b6-a2d9-e11d3c268c26 a45b1c4881403bab84a06b91f9bfc8ff { 'aliquot_tag': 'ALQ_c30d30c3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00299.RNA-Seq.transcriptome.T.hg38 C3N-00299 HNSCC RNA-Seq tumor CPT0008630009 eacd4976-8bb2-4c4c-817d-61cbf926be88.rna_seq.transcriptome.gdc_realn.bam 11767888567 BAM transcriptome harmonized CPTAC3 89a7ecd6-c36d-44d9-8439-2d7e3e63aded ba4b3d47541923ed36f269916504d023 { 'aliquot_tag': 'ALQ_c30d30c3', 'gdc_sample_type': 'Primary Tumor' } C3N-00299.WGS.N C3N-00299 HNSCC WGS blood_normal CPT0008670002 CPT0008670002.WholeGenome.RP-1303.bam 62247189218 BAM aligned CPTAC3 38b73e5b-752f-4689-9fb1-83a8f91049c3 126e9a52a29889245e4995a37fa3294e { 'aliquot_tag': 'ALQ_a15f4f8b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00299.WGS.N.hg38 C3N-00299 HNSCC WGS blood_normal CPT0008670002 777ac78e-f376-43e8-833c-3f1706ff74b8_gdc_realn.bam 94166790868 BAM harmonized CPTAC3 fafb3d0c-4fd3-433f-a922-19012047f4eb 398facdd7e358315075f309e2503f9fc { 'aliquot_tag': 'ALQ_a15f4f8b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19715,11 +21483,11 @@ C3N-00300.MethArray.Green.T C3N-00300 HNSCC Methylation Array tumor CPT000868000 C3N-00300.MethArray.Red.T C3N-00300 HNSCC Methylation Array tumor CPT0008680006 202176290087_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 a2395868-08f1-4c2a-9c27-4bc422882b5d fcffaac57480346b079e9e3a90a64601 { 'aliquot_tag': 'ALQ_24621c43', 'gdc_sample_type': 'Primary Tumor' } C3N-00300.miRNA-Seq.T C3N-00300 HNSCC miRNA-Seq tumor CPT0008680009 190813_UNC32-K00270_0196_AH5MCWBBXY_CTCAGA_S1_L001_R1_001.unaln.bam 193762858 BAM unaligned CPTAC3 61270c76-59b5-4fc6-abe2-f10b32924464 c2a745cca944fe629f7e5a98c91262d0 { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor' } C3N-00300.miRNA-Seq.T.hg38 C3N-00300 HNSCC miRNA-Seq tumor CPT0008680009 62d32a82-5fce-4acc-a637-6b04f0d114c3_mirnaseq_gdc_realn.bam 215369238 BAM harmonized CPTAC3 e0f74d20-19c6-4da1-a832-ed44e61ad158 4395af5aa458ba81ae5189dba3914dcc { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00300.RNA-Seq.chimeric.T.hg38 C3N-00300 HNSCC RNA-Seq tumor CPT0008680009 b4af5d65-1b87-4a3d-8a40-b0a42376baed.rna_seq.chimeric.gdc_realn.bam 78092412 BAM chimeric harmonized CPTAC3 a4fb6562-5fd2-4793-9cf2-e05367dd282e ebf1281793e90116bfcd0a932a087ec6 { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00300.RNA-Seq.genomic.T.hg38 C3N-00300 HNSCC RNA-Seq tumor CPT0008680009 b4af5d65-1b87-4a3d-8a40-b0a42376baed.rna_seq.genomic.gdc_realn.bam 9475288679 BAM genomic harmonized CPTAC3 bb9339a7-e1f9-4a0b-b793-4bf44f7779e0 dd29ecf26a42db445c1a7dd232c6c553 { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00300.RNA-Seq.R1_L008.T C3N-00300 HNSCC RNA-Seq tumor CPT0008680009 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L008_R1_001.fastq.gz 4159030214 FASTQ R1_L008 unaligned CPTAC3 b12e86cf-85b2-435c-88d0-0df9bcd5c49a 62dcfb8cb80b01791d216d6dbfbe9da0 { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00300.RNA-Seq.R2_L008.T C3N-00300 HNSCC RNA-Seq tumor CPT0008680009 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L008_R2_001.fastq.gz 4581574345 FASTQ R2_L008 unaligned CPTAC3 c37e8f4b-b040-44bc-b63b-009715a7681c adaebcf792eb68bcf5c908286c06a3b9 { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00300.RNA-Seq.transcriptome.T.hg38 C3N-00300 HNSCC RNA-Seq tumor CPT0008680009 b4af5d65-1b87-4a3d-8a40-b0a42376baed.rna_seq.transcriptome.gdc_realn.bam 10492335870 BAM transcriptome harmonized CPTAC3 f6155951-7456-45f8-b0e6-59c6cc56d3fb 73dcbf452c8223c9a37e072d0a0be2cc { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00300.RNA-Seq.chimeric.T.hg38 C3N-00300 HNSCC RNA-Seq tumor CPT0008680009 81d9d640-6d2e-4e09-a135-dbf0c2ebdb6f.rna_seq.chimeric.gdc_realn.bam 78080508 BAM chimeric harmonized CPTAC3 d3702a9b-165c-4d1f-b606-00fb4091cc92 94864237ca995c91712bd7a194f99504 { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00300.RNA-Seq.genomic.T.hg38 C3N-00300 HNSCC RNA-Seq tumor CPT0008680009 81d9d640-6d2e-4e09-a135-dbf0c2ebdb6f.rna_seq.genomic.gdc_realn.bam 9476799409 BAM genomic harmonized CPTAC3 88145fd7-c00f-45c3-b768-7c3250db9c2e d121387f61c7802131849f86f32c1b13 { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00300.RNA-Seq.R1_L008.T C3N-00300 HNSCC RNA-Seq tumor CPT0008680009 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L008_R1_001.fastq.gz 4159030214 FASTQ R1_L008 unaligned CPTAC3 b12e86cf-85b2-435c-88d0-0df9bcd5c49a 62dcfb8cb80b01791d216d6dbfbe9da0 { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00300.RNA-Seq.R2_L008.T C3N-00300 HNSCC RNA-Seq tumor CPT0008680009 170802_UNC31-K00269_0072_AHK3GVBBXX_GCCAAT_S2_L008_R2_001.fastq.gz 4581574345 FASTQ R2_L008 unaligned CPTAC3 c37e8f4b-b040-44bc-b63b-009715a7681c adaebcf792eb68bcf5c908286c06a3b9 { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00300.RNA-Seq.transcriptome.T.hg38 C3N-00300 HNSCC RNA-Seq tumor CPT0008680009 81d9d640-6d2e-4e09-a135-dbf0c2ebdb6f.rna_seq.transcriptome.gdc_realn.bam 11725298067 BAM transcriptome harmonized CPTAC3 3e550678-b825-471c-a676-c1c6368dbcea 5481132c9c9af6dae4729b5bf803ef9b { 'aliquot_tag': 'ALQ_b4dd01d2', 'gdc_sample_type': 'Primary Tumor' } C3N-00300.WGS.N C3N-00300 HNSCC WGS blood_normal CPT0008730002 CPT0008730002.WholeGenome.RP-1303.bam 59062997845 BAM aligned CPTAC3 6ce181e4-0ad1-4827-8360-54b5e3cf35fe 7fc5192910714b5b3cc80ef92d44f528 { 'aliquot_tag': 'ALQ_9f833aee', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00300.WGS.N.hg38 C3N-00300 HNSCC WGS blood_normal CPT0008730002 d8c0a370-514b-424d-84bc-536a64b6853e_gdc_realn.bam 88711230128 BAM harmonized CPTAC3 0b6fb82c-c893-4c7f-93c3-87d22cfa756c ec1d9193e5837845e97a2efe7e3b6a47 { 'aliquot_tag': 'ALQ_9f833aee', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00300.WGS.T C3N-00300 HNSCC WGS tumor CPT0008680006 CPT0008680006.WholeGenome.RP-1303.bam 75539649965 BAM aligned CPTAC3 10f2efc9-9e63-4881-b33e-948f70dfe6c9 dececc84f2434fb6aa57da605e643f8e { 'aliquot_tag': 'ALQ_24621c43', 'gdc_sample_type': 'Primary Tumor' } @@ -19737,9 +21505,9 @@ C3N-00302.ADD_9d8fe0f.WXS.T.hg38 C3N-00302 PDA WXS tumor CPT0008750012 c702097d- C3N-00302.miRNA-Seq.T C3N-00302 PDA miRNA-Seq tumor CPT0008750009 181012_UNC32-K00270_0124_AH223CBBXY_CTAGCT_S11_L003_R1_001.unaln.bam 260612851 BAM unaligned CPTAC3 0196b828-604c-4241-b9ed-bf98ced75253 8198ce1672679cb78b429dc3caf8c7b7 { 'aliquot_tag': 'ALQ_871116c6', 'gdc_sample_type': 'Primary Tumor' } C3N-00302.miRNA-Seq.T.hg38 C3N-00302 PDA miRNA-Seq tumor CPT0008750009 fa0d00a2-2539-45d5-af97-36f333c01e07_mirnaseq_gdc_realn.bam 280982993 BAM harmonized CPTAC3 b58c9eb1-8660-4be2-b0b0-47e0013637d1 613e24ee2de414df99d7ff65a3ea804c { 'aliquot_tag': 'ALQ_871116c6', 'gdc_sample_type': 'Primary Tumor' } C3N-00302.RNA-Seq.chimeric.T.hg38 C3N-00302 PDA RNA-Seq tumor CPT0008750009 258ac5de-a61a-48fd-a0e4-42f1ced454c3.rna_seq.chimeric.gdc_realn.bam 69093614 BAM chimeric harmonized CPTAC3 933f9ca3-6d56-4943-9e77-30f6a9fd93ee 869ccc4274e9619c7e554ec097437d84 { 'aliquot_tag': 'ALQ_871116c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00302.RNA-Seq.genomic.T.hg38 C3N-00302 PDA RNA-Seq tumor CPT0008750009 258ac5de-a61a-48fd-a0e4-42f1ced454c3.rna_seq.genomic.gdc_realn.bam 8056196040 BAM genomic harmonized CPTAC3 8dc36ece-b361-4eb9-bfbf-78e63cdad81a ede101b31c91082f47e1cfadf2435d8a { 'aliquot_tag': 'ALQ_871116c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00302.RNA-Seq.R1_L008.T C3N-00302 PDA RNA-Seq tumor CPT0008750009 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L008_R1_001.fastq.gz 3558625479 FASTQ R1_L008 unaligned CPTAC3 82397376-7221-4de6-aa6a-1debda5561ac db7c45f437a69fcfb4efb10390743b30 { 'aliquot_tag': 'ALQ_871116c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00302.RNA-Seq.R2_L008.T C3N-00302 PDA RNA-Seq tumor CPT0008750009 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L008_R2_001.fastq.gz 3833619168 FASTQ R2_L008 unaligned CPTAC3 da8d50a5-d703-4617-9895-33814419e004 3ecd9251e27fd07cc46f2cb1353ed3f1 { 'aliquot_tag': 'ALQ_871116c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00302.RNA-Seq.genomic.T.hg38 C3N-00302 PDA RNA-Seq tumor CPT0008750009 258ac5de-a61a-48fd-a0e4-42f1ced454c3.rna_seq.genomic.gdc_realn.bam 8056196040 BAM genomic harmonized CPTAC3 2642c7df-3a23-4022-950a-afb559055b1c ede101b31c91082f47e1cfadf2435d8a { 'aliquot_tag': 'ALQ_871116c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00302.RNA-Seq.R1_L008.T C3N-00302 PDA RNA-Seq tumor CPT0008750009 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L008_R1_001.fastq.gz 3558625479 FASTQ R1_L008 unaligned CPTAC3 82397376-7221-4de6-aa6a-1debda5561ac db7c45f437a69fcfb4efb10390743b30 { 'aliquot_tag': 'ALQ_871116c6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00302.RNA-Seq.R2_L008.T C3N-00302 PDA RNA-Seq tumor CPT0008750009 170802_UNC31-K00269_0072_AHK3GVBBXX_CAGATC_S1_L008_R2_001.fastq.gz 3833619168 FASTQ R2_L008 unaligned CPTAC3 da8d50a5-d703-4617-9895-33814419e004 3ecd9251e27fd07cc46f2cb1353ed3f1 { 'aliquot_tag': 'ALQ_871116c6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00302.RNA-Seq.transcriptome.T.hg38 C3N-00302 PDA RNA-Seq tumor CPT0008750009 258ac5de-a61a-48fd-a0e4-42f1ced454c3.rna_seq.transcriptome.gdc_realn.bam 8911557462 BAM transcriptome harmonized CPTAC3 ffdc7239-f94e-4459-a1b1-84cfb7449588 2b0214c1e9cd64ad0e60764e658bc091 { 'aliquot_tag': 'ALQ_871116c6', 'gdc_sample_type': 'Primary Tumor' } C3N-00302.WGS.N C3N-00302 PDA WGS blood_normal CPT0008790002 CPT0008790002.WholeGenome.RP-1303.bam 76432662163 BAM aligned CPTAC3 7947cc1b-413c-4d33-9edd-d838b88b8b5e 43ace2add928eb51cfc8453d0e39ffd9 { 'aliquot_tag': 'ALQ_d533224f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00302.WGS.N.hg38 C3N-00302 PDA WGS blood_normal CPT0008790002 330ca867-0583-4f3f-bd1b-03969b6a3ad3_gdc_realn.bam 113574527429 BAM harmonized CPTAC3 7f1601c1-dc72-4989-b752-a7e76fe983d3 fa8759c361842eb45b6f3bcab65c3942 { 'aliquot_tag': 'ALQ_d533224f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19752,9 +21520,9 @@ C3N-00303.MethArray.Red.T C3N-00303 PDA Methylation Array tumor CPT0008800006 20 C3N-00303.miRNA-Seq.T C3N-00303 PDA miRNA-Seq tumor CPT0008800009 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L003_R1_001.unaln.bam 308862040 BAM unaligned CPTAC3 a203ea68-a10d-4697-a3bf-28c6dc0104f1 9b55b94a685e8ef03eb1f3409376d3ff { 'aliquot_tag': 'ALQ_bea72b63', 'gdc_sample_type': 'Primary Tumor' } C3N-00303.miRNA-Seq.T.hg38 C3N-00303 PDA miRNA-Seq tumor CPT0008800009 bc6eb149-903a-48b2-9b11-530c652c96e7_mirnaseq_gdc_realn.bam 331174161 BAM harmonized CPTAC3 aa279b7c-6835-4b1b-a08d-86459787669e 1ad3d76f2903ab390b3381f9e16fe8c8 { 'aliquot_tag': 'ALQ_bea72b63', 'gdc_sample_type': 'Primary Tumor' } C3N-00303.RNA-Seq.chimeric.T.hg38 C3N-00303 PDA RNA-Seq tumor CPT0008800009 7c1196a8-f4a4-45b7-9053-8c8021905a63.rna_seq.chimeric.gdc_realn.bam 104575317 BAM chimeric harmonized CPTAC3 7ba5e864-304f-4646-9e31-0797f77949fa 4ee6ccb411a75da0cbd0de2758c1a941 { 'aliquot_tag': 'ALQ_bea72b63', 'gdc_sample_type': 'Primary Tumor' } -C3N-00303.RNA-Seq.genomic.T.hg38 C3N-00303 PDA RNA-Seq tumor CPT0008800009 7c1196a8-f4a4-45b7-9053-8c8021905a63.rna_seq.genomic.gdc_realn.bam 9475427760 BAM genomic harmonized CPTAC3 f24d6ab9-f22d-44d9-b7dd-2c8ff0e22e2e 4bb550939c22f42bc2b2b7d3bf40b021 { 'aliquot_tag': 'ALQ_bea72b63', 'gdc_sample_type': 'Primary Tumor' } -C3N-00303.RNA-Seq.R1_L006.T C3N-00303 PDA RNA-Seq tumor CPT0008800009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L006_R1_001.fastq.gz 4037979547 FASTQ R1_L006 unaligned CPTAC3 a2205d97-18a4-469a-aec7-8aaee1908bda 5afbc304bf90b6dee34da58449c1353a { 'aliquot_tag': 'ALQ_bea72b63', 'gdc_sample_type': 'Primary Tumor' } -C3N-00303.RNA-Seq.R2_L006.T C3N-00303 PDA RNA-Seq tumor CPT0008800009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L006_R2_001.fastq.gz 4370195399 FASTQ R2_L006 unaligned CPTAC3 cac8806d-8099-4e16-b51e-e6803842f737 6f9edf7682c8111736f262617d0c125e { 'aliquot_tag': 'ALQ_bea72b63', 'gdc_sample_type': 'Primary Tumor' } +C3N-00303.RNA-Seq.genomic.T.hg38 C3N-00303 PDA RNA-Seq tumor CPT0008800009 7c1196a8-f4a4-45b7-9053-8c8021905a63.rna_seq.genomic.gdc_realn.bam 9475427760 BAM genomic harmonized CPTAC3 66ae7440-81f6-445d-80ec-6a9ec0509f24 4bb550939c22f42bc2b2b7d3bf40b021 { 'aliquot_tag': 'ALQ_bea72b63', 'gdc_sample_type': 'Primary Tumor' } +C3N-00303.RNA-Seq.R1_L006.T C3N-00303 PDA RNA-Seq tumor CPT0008800009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L006_R1_001.fastq.gz 4037979547 FASTQ R1_L006 unaligned CPTAC3 a2205d97-18a4-469a-aec7-8aaee1908bda 5afbc304bf90b6dee34da58449c1353a { 'aliquot_tag': 'ALQ_bea72b63', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00303.RNA-Seq.R2_L006.T C3N-00303 PDA RNA-Seq tumor CPT0008800009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTCAA_S11_L006_R2_001.fastq.gz 4370195399 FASTQ R2_L006 unaligned CPTAC3 cac8806d-8099-4e16-b51e-e6803842f737 6f9edf7682c8111736f262617d0c125e { 'aliquot_tag': 'ALQ_bea72b63', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-00303.RNA-Seq.transcriptome.T.hg38 C3N-00303 PDA RNA-Seq tumor CPT0008800009 7c1196a8-f4a4-45b7-9053-8c8021905a63.rna_seq.transcriptome.gdc_realn.bam 9297622500 BAM transcriptome harmonized CPTAC3 bd5f6132-3168-4a18-b513-a040f0a0ad65 0e23c446396e01d5cc4c3c3a636a09a8 { 'aliquot_tag': 'ALQ_bea72b63', 'gdc_sample_type': 'Primary Tumor' } C3N-00303.WGS.N C3N-00303 PDA WGS blood_normal CPT0008850002 CPT0008850002.WholeGenome.RP-1303.bam 64306266108 BAM aligned CPTAC3 f9820f97-adad-4e63-85ea-7b49cd2a9551 59e4f3e976c6eb7b787f0bf067fa024c { 'aliquot_tag': 'ALQ_e1957d9b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00303.WGS.N.hg38 C3N-00303 PDA WGS blood_normal CPT0008850002 39d21868-9ae1-4149-b5b0-614e0e53bd40_gdc_realn.bam 94635126439 BAM harmonized CPTAC3 1470eac9-1e5e-47fa-81d5-2064fa403b3f 1d1517c4850ea5a9dbff6fe1e8fd3baa { 'aliquot_tag': 'ALQ_e1957d9b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19773,9 +21541,9 @@ C3N-00305.MethArray.Red.T C3N-00305 CCRCC Methylation Array tumor CPT0011240009 C3N-00305.miRNA-Seq.T C3N-00305 CCRCC miRNA-Seq tumor CPT0011240005 181113_UNC31-K00269_0164_AH23NNBBXY_CAGATC_S31_L004_R1_001.unaln.bam 261116012 BAM unaligned CPTAC3 e1261a9a-4b0b-4f7b-a18f-5a180145e190 935849f0ef3334d0007ba1d60d9a36bf { 'aliquot_tag': 'ALQ_ba38a7a3', 'gdc_sample_type': 'Primary Tumor' } C3N-00305.miRNA-Seq.T.hg38 C3N-00305 CCRCC miRNA-Seq tumor CPT0011240005 ac0ea2af-9fd4-431c-a79d-4a197381f522_mirnaseq_gdc_realn.bam 288008647 BAM harmonized CPTAC3 324ba98a-be23-41b0-924e-918cd5337892 bb021bdabb726bb85e50a5196f28d80e { 'aliquot_tag': 'ALQ_ba38a7a3', 'gdc_sample_type': 'Primary Tumor' } C3N-00305.RNA-Seq.chimeric.T.hg38 C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 0d21be5b-f794-46f6-9d4d-d6f1f7520d69.rna_seq.chimeric.gdc_realn.bam 85524047 BAM chimeric harmonized CPTAC3 17c0eb6d-4253-4c31-951d-a1d92d46cea9 8a3d9f350405f23b34afe3d02e1471fa { 'aliquot_tag': 'ALQ_ba38a7a3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00305.RNA-Seq.genomic.T.hg38 C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 0d21be5b-f794-46f6-9d4d-d6f1f7520d69.rna_seq.genomic.gdc_realn.bam 8769367772 BAM genomic harmonized CPTAC3 bc7672d3-4953-4c8e-99a8-e025bc1a0ed9 0dd0401070b1d3c77769a743a76efcf3 { 'aliquot_tag': 'ALQ_ba38a7a3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00305.RNA-Seq.R1_L002.T C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L002_R1_001.fastq.gz 3932273979 FASTQ R1_L002 unaligned CPTAC3 f0323d74-da11-4d79-99da-99b0b1d33f72 9c3e8bbbc7136214a6b58cd442912a3b { 'aliquot_tag': 'ALQ_ba38a7a3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00305.RNA-Seq.R2_L002.T C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L002_R2_001.fastq.gz 4261136184 FASTQ R2_L002 unaligned CPTAC3 e74b306e-ad75-4a6e-a475-6dbd9448a5f7 cd1f2480ffd083f40ea96c2af94bf6d3 { 'aliquot_tag': 'ALQ_ba38a7a3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00305.RNA-Seq.genomic.T.hg38 C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 0d21be5b-f794-46f6-9d4d-d6f1f7520d69.rna_seq.genomic.gdc_realn.bam 8769367772 BAM genomic harmonized CPTAC3 8b7ade40-b06f-49e5-8754-601ab7764fb8 0dd0401070b1d3c77769a743a76efcf3 { 'aliquot_tag': 'ALQ_ba38a7a3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00305.RNA-Seq.R1_L002.T C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L002_R1_001.fastq.gz 3932273979 FASTQ R1_L002 unaligned CPTAC3 f0323d74-da11-4d79-99da-99b0b1d33f72 9c3e8bbbc7136214a6b58cd442912a3b { 'aliquot_tag': 'ALQ_ba38a7a3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00305.RNA-Seq.R2_L002.T C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L002_R2_001.fastq.gz 4261136184 FASTQ R2_L002 unaligned CPTAC3 e74b306e-ad75-4a6e-a475-6dbd9448a5f7 cd1f2480ffd083f40ea96c2af94bf6d3 { 'aliquot_tag': 'ALQ_ba38a7a3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-00305.RNA-Seq.transcriptome.T.hg38 C3N-00305 CCRCC RNA-Seq tumor CPT0011240005 0d21be5b-f794-46f6-9d4d-d6f1f7520d69.rna_seq.transcriptome.gdc_realn.bam 10417896492 BAM transcriptome harmonized CPTAC3 353d8272-99d5-4856-89aa-3fe455b9c3e8 f47f8bee5ed83d528c4ec51093b6d69e { 'aliquot_tag': 'ALQ_ba38a7a3', 'gdc_sample_type': 'Primary Tumor' } C3N-00305.WGS.N C3N-00305 CCRCC WGS blood_normal CPT0011270002 CPT0011270002.WholeGenome.RP-1303.bam 60068684575 BAM aligned CPTAC3 e624c06c-f138-446e-bf87-dd96f9ac8e18 e88a7719d4909e74f28f1f1d77be7c83 { 'aliquot_tag': 'ALQ_63fc48d0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00305.WGS.N.hg38 C3N-00305 CCRCC WGS blood_normal CPT0011270002 7aa7473c-d400-4b86-a30d-1f0e3359fde9_gdc_realn.bam 87981277539 BAM harmonized CPTAC3 0beee5c4-e68d-4c88-b431-eb43a2219bb0 ef34b6cf243ad1205535202c17e25ea0 { 'aliquot_tag': 'ALQ_63fc48d0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19793,12 +21561,12 @@ C3N-00306.miRNA-Seq.T C3N-00306 HNSCC miRNA-Seq tumor CPT0011290005 181012_UNC32 C3N-00306.miRNA-Seq.T.hg38 C3N-00306 HNSCC miRNA-Seq tumor CPT0011290005 6b6f1abb-5ca7-446e-9864-c53c5211b83e_mirnaseq_gdc_realn.bam 243310161 BAM harmonized CPTAC3 b934af06-1ac6-4380-a19e-b626c9c868fa 6b4e792342c7e2c5037c3167fed97f65 { 'aliquot_tag': 'ALQ_42a86312', 'gdc_sample_type': 'Primary Tumor' } C3N-00306.RNA-Seq.chimeric.A.hg38 C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 c813fdd1-fd38-47fe-82da-ab6059afb141.rna_seq.chimeric.gdc_realn.bam 27327787 BAM chimeric harmonized CPTAC3 f555bfd6-e787-4c15-b5db-65070608adf3 948f63791fb75c9615a842f1e7e1d4c5 { 'aliquot_tag': 'ALQ_672dd01c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00306.RNA-Seq.chimeric.T.hg38 C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 16c49d0c-b2b7-4d10-b9c2-894de09d5e9e.rna_seq.chimeric.gdc_realn.bam 77324130 BAM chimeric harmonized CPTAC3 c0072cf7-764c-46a1-9cc2-d84ec023b199 66f93c6dae87cffcf57a15777555325c { 'aliquot_tag': 'ALQ_42a86312', 'gdc_sample_type': 'Primary Tumor' } -C3N-00306.RNA-Seq.genomic.A.hg38 C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 c813fdd1-fd38-47fe-82da-ab6059afb141.rna_seq.genomic.gdc_realn.bam 8203178062 BAM genomic harmonized CPTAC3 3e60c189-30e5-4c5c-8823-dc38f69a4617 46cc346047a094862e4565cb03d58c55 { 'aliquot_tag': 'ALQ_672dd01c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00306.RNA-Seq.genomic.A.hg38 C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 c813fdd1-fd38-47fe-82da-ab6059afb141.rna_seq.genomic.gdc_realn.bam 8203178062 BAM genomic harmonized CPTAC3 c11bbca0-2325-4e16-a8d5-8c3cde2464c5 46cc346047a094862e4565cb03d58c55 { 'aliquot_tag': 'ALQ_672dd01c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00306.RNA-Seq.genomic.T.hg38 C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 16c49d0c-b2b7-4d10-b9c2-894de09d5e9e.rna_seq.genomic.gdc_realn.bam 11513718505 BAM genomic harmonized CPTAC3 9927dffe-7205-4aeb-a9a9-f58a5a49122b b99330786fe1db5ab685b7cdb54712cd { 'aliquot_tag': 'ALQ_42a86312', 'gdc_sample_type': 'Primary Tumor' } -C3N-00306.RNA-Seq.R1_L005.T C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 170912_UNC31-K00269_0081_AHL3YKBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 5235213428 FASTQ R1_L005 unaligned CPTAC3 9995060c-2016-4690-a7c9-cb39122adbd1 b522e0c1d5d912e7d6c79fbe608ad35e { 'aliquot_tag': 'ALQ_42a86312', 'gdc_sample_type': 'Primary Tumor' } -C3N-00306.RNA-Seq.R1_L007.A C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L007_R1_001.fastq.gz 3871783418 FASTQ R1_L007 unaligned CPTAC3 a467dacf-bb8c-4987-8ede-d133d9eff823 8a5a0f35dcf5e02d49a42afdce53d421 { 'aliquot_tag': 'ALQ_672dd01c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00306.RNA-Seq.R2_L005.T C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 170912_UNC31-K00269_0081_AHL3YKBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 5522054475 FASTQ R2_L005 unaligned CPTAC3 0e99fd41-6b4d-4d8b-8aca-5b06c619b69b 3c437fcf9a2d79ba9cfc3d38fb49523f { 'aliquot_tag': 'ALQ_42a86312', 'gdc_sample_type': 'Primary Tumor' } -C3N-00306.RNA-Seq.R2_L007.A C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4076681913 FASTQ R2_L007 unaligned CPTAC3 a2c9b387-c1f2-4506-8372-06c1114d38bf b42f77b04e7d7c52a17a0e3f66e95b6b { 'aliquot_tag': 'ALQ_672dd01c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00306.RNA-Seq.R1_L005.T C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 170912_UNC31-K00269_0081_AHL3YKBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 5235213428 FASTQ R1_L005 unaligned CPTAC3 9995060c-2016-4690-a7c9-cb39122adbd1 b522e0c1d5d912e7d6c79fbe608ad35e { 'aliquot_tag': 'ALQ_42a86312', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00306.RNA-Seq.R1_L007.A C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L007_R1_001.fastq.gz 3871783418 FASTQ R1_L007 unaligned CPTAC3 a467dacf-bb8c-4987-8ede-d133d9eff823 8a5a0f35dcf5e02d49a42afdce53d421 { 'aliquot_tag': 'ALQ_672dd01c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-00306.RNA-Seq.R2_L005.T C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 170912_UNC31-K00269_0081_AHL3YKBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 5522054475 FASTQ R2_L005 unaligned CPTAC3 0e99fd41-6b4d-4d8b-8aca-5b06c619b69b 3c437fcf9a2d79ba9cfc3d38fb49523f { 'aliquot_tag': 'ALQ_42a86312', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00306.RNA-Seq.R2_L007.A C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L007_R2_001.fastq.gz 4076681913 FASTQ R2_L007 unaligned CPTAC3 a2c9b387-c1f2-4506-8372-06c1114d38bf b42f77b04e7d7c52a17a0e3f66e95b6b { 'aliquot_tag': 'ALQ_672dd01c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-00306.RNA-Seq.transcriptome.A.hg38 C3N-00306 HNSCC RNA-Seq tissue_normal CPT0011320006 c813fdd1-fd38-47fe-82da-ab6059afb141.rna_seq.transcriptome.gdc_realn.bam 12110336620 BAM transcriptome harmonized CPTAC3 b97eb161-f56b-4318-8ab7-90e06ca30bb3 88ced4741c35d97fa054b5d084478c75 { 'aliquot_tag': 'ALQ_672dd01c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00306.RNA-Seq.transcriptome.T.hg38 C3N-00306 HNSCC RNA-Seq tumor CPT0011290005 16c49d0c-b2b7-4d10-b9c2-894de09d5e9e.rna_seq.transcriptome.gdc_realn.bam 14220644459 BAM transcriptome harmonized CPTAC3 2fa9f053-60c4-4a77-8870-705d666392fa bc845c88ed6f1faf2e46defd20ceb4b2 { 'aliquot_tag': 'ALQ_42a86312', 'gdc_sample_type': 'Primary Tumor' } C3N-00306.WGS.N C3N-00306 HNSCC WGS blood_normal CPT0011380006 CPT0011380006.WholeGenome.RP-1303.bam 79140326544 BAM aligned CPTAC3 76ba8c6b-ca31-442a-be03-23460b07b21a 36e2d5810f3193bc3ab03220ca9f5951 { 'aliquot_tag': 'ALQ_2d9dc8bd', 'gdc_sample_type': 'Blood Derived Normal' } @@ -19819,12 +21587,12 @@ C3N-00307.miRNA-Seq.T C3N-00307 HNSCC miRNA-Seq tumor CPT0008930009 181012_UNC32 C3N-00307.miRNA-Seq.T.hg38 C3N-00307 HNSCC miRNA-Seq tumor CPT0008930009 c1a379d7-efc0-4ce6-9072-0fda975e50c4_mirnaseq_gdc_realn.bam 275051969 BAM harmonized CPTAC3 6eacf2a7-5dd3-489b-a4a6-7d57019eb12a 71b126597b4e6d815d08a90112b55029 { 'aliquot_tag': 'ALQ_325b8216', 'gdc_sample_type': 'Primary Tumor' } C3N-00307.RNA-Seq.chimeric.A.hg38 C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 b587bc80-4fbe-4eb5-8dbf-a7039cbca81c.rna_seq.chimeric.gdc_realn.bam 31858254 BAM chimeric harmonized CPTAC3 41e1cc80-c1aa-4ad8-8180-82f91d1f818c 2362122e8bfab782e4e57cc0d657fd05 { 'aliquot_tag': 'ALQ_f30d414d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00307.RNA-Seq.chimeric.T.hg38 C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 f5228d77-2768-4326-aef0-5e0948ec5738.rna_seq.chimeric.gdc_realn.bam 70101209 BAM chimeric harmonized CPTAC3 28f9a1be-f11c-4ee4-9d96-98e7daf281f5 c7418497a460c5556ad588a3f32d0ecc { 'aliquot_tag': 'ALQ_325b8216', 'gdc_sample_type': 'Primary Tumor' } -C3N-00307.RNA-Seq.genomic.A.hg38 C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 b587bc80-4fbe-4eb5-8dbf-a7039cbca81c.rna_seq.genomic.gdc_realn.bam 8243246758 BAM genomic harmonized CPTAC3 b7829bec-0aa1-4487-9d01-b289a5301ac1 7f6b7d0b80c2e11ad8e308359064fe01 { 'aliquot_tag': 'ALQ_f30d414d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00307.RNA-Seq.genomic.A.hg38 C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 b587bc80-4fbe-4eb5-8dbf-a7039cbca81c.rna_seq.genomic.gdc_realn.bam 8243246758 BAM genomic harmonized CPTAC3 db3550c2-1349-4a45-8ab3-6778d757fc87 7f6b7d0b80c2e11ad8e308359064fe01 { 'aliquot_tag': 'ALQ_f30d414d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00307.RNA-Seq.genomic.T.hg38 C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 f5228d77-2768-4326-aef0-5e0948ec5738.rna_seq.genomic.gdc_realn.bam 7973855122 BAM genomic harmonized CPTAC3 f83476d4-7542-4752-b089-9d179105021c 984e55c449cfc20b19a7fd9838fad346 { 'aliquot_tag': 'ALQ_325b8216', 'gdc_sample_type': 'Primary Tumor' } -C3N-00307.RNA-Seq.R1_L005.T C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L005_R1_001.fastq.gz 3567074463 FASTQ R1_L005 unaligned CPTAC3 669165d7-8780-4ae4-9498-fa7994b3eda2 b24b5efa03f341375298b114de336c90 { 'aliquot_tag': 'ALQ_325b8216', 'gdc_sample_type': 'Primary Tumor' } -C3N-00307.RNA-Seq.R1_L008.A C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 3881941919 FASTQ R1_L008 unaligned CPTAC3 a2cdc279-bef0-4d9f-82f5-9535bf50ea0b fad16843367982785caa9645db82993b { 'aliquot_tag': 'ALQ_f30d414d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00307.RNA-Seq.R2_L005.T C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L005_R2_001.fastq.gz 3830056423 FASTQ R2_L005 unaligned CPTAC3 90ef718e-5752-4d8b-9543-80ebcba508cb 81c1e70ae92956e7615181cb22585652 { 'aliquot_tag': 'ALQ_325b8216', 'gdc_sample_type': 'Primary Tumor' } -C3N-00307.RNA-Seq.R2_L008.A C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4257254829 FASTQ R2_L008 unaligned CPTAC3 65b30bc5-232e-4ac3-ab95-66e10bc6d8ed 8bd387f65eb6baf8800341c810d806ef { 'aliquot_tag': 'ALQ_f30d414d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00307.RNA-Seq.R1_L005.T C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L005_R1_001.fastq.gz 3567074463 FASTQ R1_L005 unaligned CPTAC3 669165d7-8780-4ae4-9498-fa7994b3eda2 b24b5efa03f341375298b114de336c90 { 'aliquot_tag': 'ALQ_325b8216', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00307.RNA-Seq.R1_L008.A C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 3881941919 FASTQ R1_L008 unaligned CPTAC3 a2cdc279-bef0-4d9f-82f5-9535bf50ea0b fad16843367982785caa9645db82993b { 'aliquot_tag': 'ALQ_f30d414d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00307.RNA-Seq.R2_L005.T C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 170818_UNC32-K00270_0050_AHL2FHBBXX_AGTTCC_S3_L005_R2_001.fastq.gz 3830056423 FASTQ R2_L005 unaligned CPTAC3 90ef718e-5752-4d8b-9543-80ebcba508cb 81c1e70ae92956e7615181cb22585652 { 'aliquot_tag': 'ALQ_325b8216', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00307.RNA-Seq.R2_L008.A C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4257254829 FASTQ R2_L008 unaligned CPTAC3 65b30bc5-232e-4ac3-ab95-66e10bc6d8ed 8bd387f65eb6baf8800341c810d806ef { 'aliquot_tag': 'ALQ_f30d414d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00307.RNA-Seq.transcriptome.A.hg38 C3N-00307 HNSCC RNA-Seq tissue_normal CPT0008960005 b587bc80-4fbe-4eb5-8dbf-a7039cbca81c.rna_seq.transcriptome.gdc_realn.bam 11902820573 BAM transcriptome harmonized CPTAC3 97ea9cf1-e0c9-4ad5-8bb6-fe74e9fad586 cd432ea48a336ac82082bdc14222dcaf { 'aliquot_tag': 'ALQ_f30d414d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00307.RNA-Seq.transcriptome.T.hg38 C3N-00307 HNSCC RNA-Seq tumor CPT0008930009 f5228d77-2768-4326-aef0-5e0948ec5738.rna_seq.transcriptome.gdc_realn.bam 9250526334 BAM transcriptome harmonized CPTAC3 5f370955-aa53-4fea-a6d5-11bf988419fc e4896b90ab2500eecdc877c04cfb35a7 { 'aliquot_tag': 'ALQ_325b8216', 'gdc_sample_type': 'Primary Tumor' } C3N-00307.WGS.A C3N-00307 HNSCC WGS tissue_normal CPT0008960008 CPT0008960008.WholeGenome.RP-1303.bam 59450442968 BAM aligned CPTAC3 dc0e1aa6-be5e-4528-bfd2-1eb129d41443 55e785d0017282c13c9d0d7f2e4b4001 { 'aliquot_tag': 'ALQ_8dbc3df0', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19843,11 +21611,11 @@ C3N-00309.MethArray.Green.T C3N-00309 LSCC Methylation Array tumor CPT0008330006 C3N-00309.MethArray.Red.T C3N-00309 LSCC Methylation Array tumor CPT0008330006 202184990013_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 3277505b-61cd-482d-abba-f3927f826f53 5bdad05e93137f1d1a8ae33eff0ffa38 { 'aliquot_tag': 'ALQ_37fbce1', 'gdc_sample_type': 'Primary Tumor' } C3N-00309.miRNA-Seq.T C3N-00309 LSCC miRNA-Seq tumor CPT0008330009 181012_UNC32-K00270_0124_AH223CBBXY_CAGGCG_S6_L003_R1_001.unaln.bam 256781930 BAM unaligned CPTAC3 e29b59a2-030a-4bdb-b863-cf57d9c88a51 170544cacd266f6a8512ce0c1e8f84b3 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor' } C3N-00309.miRNA-Seq.T.hg38 C3N-00309 LSCC miRNA-Seq tumor CPT0008330009 dbb776e3-937a-4a4f-adf6-bc44933391cd_mirnaseq_gdc_realn.bam 287096905 BAM harmonized CPTAC3 8f6f7edd-a9f2-4b56-9625-d4a9c8bc874e 4c70a8ec7a29c49caec648e9bf3fbbf0 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor' } -C3N-00309.RNA-Seq.chimeric.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 c6a203ac-9fd9-4aa9-a82d-4d3e0915cef7.rna_seq.chimeric.gdc_realn.bam 144068654 BAM chimeric harmonized CPTAC3 36834510-96a7-4cb3-9ab6-cc5b6e05ddc3 53138ad8abc7423612fd1722fb87c05b { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor' } -C3N-00309.RNA-Seq.genomic.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 c6a203ac-9fd9-4aa9-a82d-4d3e0915cef7.rna_seq.genomic.gdc_realn.bam 10519768391 BAM genomic harmonized CPTAC3 c8b33606-b50a-4309-9e13-95f59861f24f a2c964e46b53860b703e5d8814aefbb0 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor' } -C3N-00309.RNA-Seq.R1_L006.T C3N-00309 LSCC RNA-Seq tumor CPT0008330009 170802_UNC31-K00269_0072_AHK3GVBBXX_CGATGT_S19_L006_R1_001.fastq.gz 4517409389 FASTQ R1_L006 unaligned CPTAC3 93a2a88a-0517-4060-8067-c82235949e9d faa938958cb956f4e8f834baa5acad33 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor' } -C3N-00309.RNA-Seq.R2_L006.T C3N-00309 LSCC RNA-Seq tumor CPT0008330009 170802_UNC31-K00269_0072_AHK3GVBBXX_CGATGT_S19_L006_R2_001.fastq.gz 5162929640 FASTQ R2_L006 unaligned CPTAC3 9b69529e-aff0-41be-90aa-5426cc64828e 4ddbc41bc0928d0715f095ea500a98a3 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor' } -C3N-00309.RNA-Seq.transcriptome.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 c6a203ac-9fd9-4aa9-a82d-4d3e0915cef7.rna_seq.transcriptome.gdc_realn.bam 10941207527 BAM transcriptome harmonized CPTAC3 996041ad-50e1-42c6-83e2-03698a752b3a 3136bfbb088b8eb7056f8d716889a4e1 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor' } +C3N-00309.RNA-Seq.chimeric.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 dbaebbeb-4c08-4ef4-aa7c-f56a183ced94.rna_seq.chimeric.gdc_realn.bam 144037730 BAM chimeric harmonized CPTAC3 57e032ae-29bb-49cd-894f-193645df068a 7187d6cd080bdaccecedbdf52642f676 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor' } +C3N-00309.RNA-Seq.genomic.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 dbaebbeb-4c08-4ef4-aa7c-f56a183ced94.rna_seq.genomic.gdc_realn.bam 10522043918 BAM genomic harmonized CPTAC3 c0a860bd-83c3-47dc-b57b-227c18c60d89 fd498d9f3462b1c38f81fb5538c56924 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor' } +C3N-00309.RNA-Seq.R1_L006.T C3N-00309 LSCC RNA-Seq tumor CPT0008330009 170802_UNC31-K00269_0072_AHK3GVBBXX_CGATGT_S19_L006_R1_001.fastq.gz 4517409389 FASTQ R1_L006 unaligned CPTAC3 93a2a88a-0517-4060-8067-c82235949e9d faa938958cb956f4e8f834baa5acad33 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00309.RNA-Seq.R2_L006.T C3N-00309 LSCC RNA-Seq tumor CPT0008330009 170802_UNC31-K00269_0072_AHK3GVBBXX_CGATGT_S19_L006_R2_001.fastq.gz 5162929640 FASTQ R2_L006 unaligned CPTAC3 9b69529e-aff0-41be-90aa-5426cc64828e 4ddbc41bc0928d0715f095ea500a98a3 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-00309.RNA-Seq.transcriptome.T.hg38 C3N-00309 LSCC RNA-Seq tumor CPT0008330009 dbaebbeb-4c08-4ef4-aa7c-f56a183ced94.rna_seq.transcriptome.gdc_realn.bam 12329223685 BAM transcriptome harmonized CPTAC3 2b021eeb-776a-4fca-a49a-e8b0be4c9903 9af27151af65240c039acef5a8be1708 { 'aliquot_tag': 'ALQ_93c0a170', 'gdc_sample_type': 'Primary Tumor' } C3N-00309.WGS.N C3N-00309 LSCC WGS blood_normal CPT0008370002 CPT0008370002.WholeGenome.RP-1303.bam 77384832298 BAM aligned CPTAC3 2b7b2c26-d2e2-4345-8c7d-d00d199281c4 132ef9a2823139ff44785b3fcefc2324 { 'aliquot_tag': 'ALQ_f192de38', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00309.WGS.N.hg38 C3N-00309 LSCC WGS blood_normal CPT0008370002 1b3e4f90-8f81-493d-a762-5d91682aa002_gdc_realn.bam 115288393197 BAM harmonized CPTAC3 fbd36f17-35ca-4bfe-b795-2fabe3967c6f d56835e4a15352ad810ee1334a5b6b09 { 'aliquot_tag': 'ALQ_f192de38', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00309.WGS.T C3N-00309 LSCC WGS tumor CPT0008330006 CPT0008330006.WholeGenome.RP-1303.bam 61907696198 BAM aligned CPTAC3 74e316d0-43fd-48c8-9467-7a2b0b105b64 8e26e82ee9e4cb7fdeb28c64667c7cbd { 'aliquot_tag': 'ALQ_37fbce1', 'gdc_sample_type': 'Primary Tumor' } @@ -19865,9 +21633,9 @@ C3N-00310.DUP_458bb307.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0008980009 5959cb C3N-00310.DUP_595c969b.miRNA-Seq.T C3N-00310 CCRCC miRNA-Seq tumor CPT0009010006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L003_R1_001.unaln.bam 349103158 BAM unaligned CPTAC3 72910fc8-ead6-4beb-a420-50b5523e381b 66fcd407f61f0c8ffb3f126a3fc7908c { 'aliquot_tag': 'DUP_595c969b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.DUP_595c969b.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0009010006 b0577a99-b78c-4787-a0b6-aad5f34d83ce_mirnaseq_gdc_realn.bam 380825242 BAM harmonized CPTAC3 40edd04a-7a95-4e89-bf7c-5ae8208cd156 f4ebbc5146d8db0729696598735b73fe { 'aliquot_tag': 'DUP_595c969b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.DUP_595c969b.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 0a80df6c-58ff-4593-9d47-063c8571a8f3.rna_seq.chimeric.gdc_realn.bam 185035877 BAM chimeric harmonized CPTAC3 7bcb728b-dfa7-4c20-8ffb-656ecf601943 6f557c7747de8ca61be94efbede9f6f3 { 'aliquot_tag': 'DUP_595c969b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00310.DUP_595c969b.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 0a80df6c-58ff-4593-9d47-063c8571a8f3.rna_seq.genomic.gdc_realn.bam 9078641847 BAM genomic harmonized CPTAC3 04a2b58c-0ee6-4141-99ed-0a0f1ee0ecee 8591f27d07b946608a3332ec3b2fa750 { 'aliquot_tag': 'DUP_595c969b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00310.DUP_595c969b.RNA-Seq.R1_L007.T C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 200519_UNC31-K00269_0279_AHH5VTBBXY_GTTCCAAT-AATTCTGC_S28_L007_R1_001.fastq.gz 4431210554 FASTQ R1_L007 unaligned CPTAC3 a77fb3b9-271f-41a8-8427-63ffe6958181 a6c030d1396c966b74150a8980564716 { 'aliquot_tag': 'DUP_595c969b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00310.DUP_595c969b.RNA-Seq.R2_L007.T C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 200519_UNC31-K00269_0279_AHH5VTBBXY_GTTCCAAT-AATTCTGC_S28_L007_R2_001.fastq.gz 5092745384 FASTQ R2_L007 unaligned CPTAC3 f39809c1-4a34-4c1d-9f70-acf788723916 1b1febbf6e36dab493b758e3d3765253 { 'aliquot_tag': 'DUP_595c969b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00310.DUP_595c969b.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 0a80df6c-58ff-4593-9d47-063c8571a8f3.rna_seq.genomic.gdc_realn.bam 9078641847 BAM genomic harmonized CPTAC3 dd889250-2b83-4541-a791-545d2a3bf5a3 8591f27d07b946608a3332ec3b2fa750 { 'aliquot_tag': 'DUP_595c969b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00310.DUP_595c969b.RNA-Seq.R1_L007.T C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 200519_UNC31-K00269_0279_AHH5VTBBXY_GTTCCAAT-AATTCTGC_S28_L007_R1_001.fastq.gz 4431210554 FASTQ R1_L007 unaligned CPTAC3 a77fb3b9-271f-41a8-8427-63ffe6958181 a6c030d1396c966b74150a8980564716 { 'aliquot_tag': 'DUP_595c969b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3N-00310.DUP_595c969b.RNA-Seq.R2_L007.T C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 200519_UNC31-K00269_0279_AHH5VTBBXY_GTTCCAAT-AATTCTGC_S28_L007_R2_001.fastq.gz 5092745384 FASTQ R2_L007 unaligned CPTAC3 f39809c1-4a34-4c1d-9f70-acf788723916 1b1febbf6e36dab493b758e3d3765253 { 'aliquot_tag': 'DUP_595c969b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3N-00310.DUP_595c969b.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009010006 0a80df6c-58ff-4593-9d47-063c8571a8f3.rna_seq.transcriptome.gdc_realn.bam 11140862560 BAM transcriptome harmonized CPTAC3 f98d57f7-68c3-47c8-857f-10110d62eca7 ab228ebc734a57902807a91ff3ed0a2b { 'aliquot_tag': 'DUP_595c969b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.DUP_78eb9ab7.MethArray.Green.T C3N-00310 CCRCC Methylation Array tumor CPT0008990009 204372030013_R03C01_Grn.idat 13677895 IDAT Green NA CPTAC3 d193607b-b8f4-4e12-8bed-3e0cf0dcb134 180fc14e00eafc04759771ca2e787033 { 'aliquot_tag': 'DUP_78eb9ab7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.DUP_78eb9ab7.MethArray.Red.T C3N-00310 CCRCC Methylation Array tumor CPT0008990009 204372030013_R03C01_Red.idat 13677895 IDAT Red NA CPTAC3 ce8fe390-d498-45c7-9152-278042f4d6b7 11408fc72fe40bebe2db7e921a8e6cad { 'aliquot_tag': 'DUP_78eb9ab7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -19878,9 +21646,9 @@ C3N-00310.DUP_78eb9ab7.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0008990009 754c55 C3N-00310.DUP_bc456b58.miRNA-Seq.T C3N-00310 CCRCC miRNA-Seq tumor CPT0008980013 200526_UNC32-K00270_0248_BHH7WFBBXY_TACAGC_S16_L001_R1_001.unaln.bam 342062318 BAM unaligned CPTAC3 4cb2c585-25af-43a2-9208-8b8ac150529e 1bbe0711b45899d6ff802e3d3d575fe6 { 'aliquot_tag': 'DUP_bc456b58', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.DUP_bc456b58.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0008980013 4ce7b92f-c2e4-439e-adc3-86aa0477050c_mirnaseq_gdc_realn.bam 371421517 BAM harmonized CPTAC3 652565ae-161b-4d90-8397-2fa75af2f1f6 f5c845a1a4365819bb706d8cedb02983 { 'aliquot_tag': 'DUP_bc456b58', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.DUP_bc456b58.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 422d25fd-6ec6-4dff-8ace-36a2405a417e.rna_seq.chimeric.gdc_realn.bam 166777535 BAM chimeric harmonized CPTAC3 9ed970ce-c37e-4b28-b496-7237ebf04d7b 2c61900eda42da02b4b0ce57aab9129f { 'aliquot_tag': 'DUP_bc456b58', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00310.DUP_bc456b58.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 422d25fd-6ec6-4dff-8ace-36a2405a417e.rna_seq.genomic.gdc_realn.bam 6727764397 BAM genomic harmonized CPTAC3 1e6f5e76-9600-43f0-8298-0d4779221359 59f46084b4b38bf3237db5f582c288df { 'aliquot_tag': 'DUP_bc456b58', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00310.DUP_bc456b58.RNA-Seq.R1_L001.T C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 200608_UNC31-K00269_0281_AHH5NFBBXY_GTATGTTC-AACAGGAA_S3_L001_R1_001.fastq.gz 3094161507 FASTQ R1_L001 unaligned CPTAC3 edbfa46e-fc7f-4c79-8a88-b98aa1c6f90b 3a32abe8b5e3d9ce921434b042e6eff8 { 'aliquot_tag': 'DUP_bc456b58', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00310.DUP_bc456b58.RNA-Seq.R2_L001.T C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 200608_UNC31-K00269_0281_AHH5NFBBXY_GTATGTTC-AACAGGAA_S3_L001_R2_001.fastq.gz 3750254830 FASTQ R2_L001 unaligned CPTAC3 7d29bd2f-9762-44ce-be42-89e29861f4ed 815fd59d0393ee5520c3507692a8e3f2 { 'aliquot_tag': 'DUP_bc456b58', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00310.DUP_bc456b58.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 422d25fd-6ec6-4dff-8ace-36a2405a417e.rna_seq.genomic.gdc_realn.bam 6727764397 BAM genomic harmonized CPTAC3 add29852-a04d-4792-bed4-4e7dbdfa19d3 59f46084b4b38bf3237db5f582c288df { 'aliquot_tag': 'DUP_bc456b58', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00310.DUP_bc456b58.RNA-Seq.R1_L001.T C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 200608_UNC31-K00269_0281_AHH5NFBBXY_GTATGTTC-AACAGGAA_S3_L001_R1_001.fastq.gz 3094161507 FASTQ R1_L001 unaligned CPTAC3 edbfa46e-fc7f-4c79-8a88-b98aa1c6f90b 3a32abe8b5e3d9ce921434b042e6eff8 { 'aliquot_tag': 'DUP_bc456b58', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3N-00310.DUP_bc456b58.RNA-Seq.R2_L001.T C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 200608_UNC31-K00269_0281_AHH5NFBBXY_GTATGTTC-AACAGGAA_S3_L001_R2_001.fastq.gz 3750254830 FASTQ R2_L001 unaligned CPTAC3 7d29bd2f-9762-44ce-be42-89e29861f4ed 815fd59d0393ee5520c3507692a8e3f2 { 'aliquot_tag': 'DUP_bc456b58', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3N-00310.DUP_bc456b58.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008980013 422d25fd-6ec6-4dff-8ace-36a2405a417e.rna_seq.transcriptome.gdc_realn.bam 8661270786 BAM transcriptome harmonized CPTAC3 64c7c925-e8a9-40cf-8e60-d9550a568c28 dac8a98aa0411957fb940303d7b8f75b { 'aliquot_tag': 'DUP_bc456b58', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.DUP_c9e38b0a.MethArray.Green.T C3N-00310 CCRCC Methylation Array tumor CPT0009010009 204367400087_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 2d04d4d1-955a-47b6-9ebb-4cf48b245427 6b2262b53c6880b2428f50ead944b70d { 'aliquot_tag': 'DUP_c9e38b0a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.DUP_c9e38b0a.MethArray.Red.T C3N-00310 CCRCC Methylation Array tumor CPT0009010009 204367400087_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 753810b8-288c-4f1d-9303-e530b93aaf71 3f3a9fce733b2e5e4ce19ad4258fc796 { 'aliquot_tag': 'DUP_c9e38b0a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -19891,9 +21659,9 @@ C3N-00310.DUP_c9e38b0a.WXS.T.hg38 C3N-00310 CCRCC WXS tumor CPT0009010009 4c295f C3N-00310.DUP_e8548726.miRNA-Seq.T C3N-00310 CCRCC miRNA-Seq tumor CPT0008990006 200526_UNC32-K00270_0248_BHH7WFBBXY_TCCCGA_S45_L003_R1_001.unaln.bam 243398978 BAM unaligned CPTAC3 f649e262-2a54-4203-b0d1-72374e1756f4 cfa197cbbe32e12788bf726ed40825c5 { 'aliquot_tag': 'DUP_e8548726', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.DUP_e8548726.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0008990006 5bace9e7-9920-47e2-a292-bba1cf1b6375_mirnaseq_gdc_realn.bam 269228686 BAM harmonized CPTAC3 3f9b235b-5c5a-4546-8293-1cd353f41813 9df16f9866049f4166beb607b9979632 { 'aliquot_tag': 'DUP_e8548726', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.DUP_e8548726.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 21ff1170-996b-4785-8b76-659490eb7021.rna_seq.chimeric.gdc_realn.bam 210633815 BAM chimeric harmonized CPTAC3 b5e1928b-6934-4d2e-bcd0-316274e17c11 2bedc1d6ea2b3a955847b1305f608dd7 { 'aliquot_tag': 'DUP_e8548726', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00310.DUP_e8548726.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 21ff1170-996b-4785-8b76-659490eb7021.rna_seq.genomic.gdc_realn.bam 7183184963 BAM genomic harmonized CPTAC3 51de8a7d-0276-4a5a-8e69-85ca208e3ce9 fd7383646b3739f36e65e4fa004c75a5 { 'aliquot_tag': 'DUP_e8548726', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00310.DUP_e8548726.RNA-Seq.R1_L007.T C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAATGCA-GGAACGTT_S27_L007_R1_001.fastq.gz 3466129521 FASTQ R1_L007 unaligned CPTAC3 89dee074-c120-4cff-8803-2939e845e8d0 b543b4583027331f77ec4a95739520bd { 'aliquot_tag': 'DUP_e8548726', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00310.DUP_e8548726.RNA-Seq.R2_L007.T C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAATGCA-GGAACGTT_S27_L007_R2_001.fastq.gz 3995206015 FASTQ R2_L007 unaligned CPTAC3 e889774e-64a6-4276-9079-c53c0966c003 f99b35d25e9d649ef22f310e77ebc2f3 { 'aliquot_tag': 'DUP_e8548726', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00310.DUP_e8548726.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 21ff1170-996b-4785-8b76-659490eb7021.rna_seq.genomic.gdc_realn.bam 7183184963 BAM genomic harmonized CPTAC3 c5e9172f-a471-4027-8b9b-0b4602fdc283 fd7383646b3739f36e65e4fa004c75a5 { 'aliquot_tag': 'DUP_e8548726', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00310.DUP_e8548726.RNA-Seq.R1_L007.T C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAATGCA-GGAACGTT_S27_L007_R1_001.fastq.gz 3466129521 FASTQ R1_L007 unaligned CPTAC3 89dee074-c120-4cff-8803-2939e845e8d0 b543b4583027331f77ec4a95739520bd { 'aliquot_tag': 'DUP_e8548726', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3N-00310.DUP_e8548726.RNA-Seq.R2_L007.T C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAATGCA-GGAACGTT_S27_L007_R2_001.fastq.gz 3995206015 FASTQ R2_L007 unaligned CPTAC3 e889774e-64a6-4276-9079-c53c0966c003 f99b35d25e9d649ef22f310e77ebc2f3 { 'aliquot_tag': 'DUP_e8548726', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3N-00310.DUP_e8548726.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0008990006 21ff1170-996b-4785-8b76-659490eb7021.rna_seq.transcriptome.gdc_realn.bam 8320888667 BAM transcriptome harmonized CPTAC3 d71a10b5-ed23-4e48-8b2b-9743d501bd01 927da712359085f122b7591328fc2253 { 'aliquot_tag': 'DUP_e8548726', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00310.MethArray.Green.A C3N-00310 CCRCC Methylation Array tissue_normal CPT0009020009 204930640122_R02C01_Grn.idat 13677965 IDAT Green NA CPTAC3 4a425854-307f-4541-bb58-baeb3eda394f c8b9c37a4c97025491c195301520577f { 'aliquot_tag': 'ALQ_8e43f1da', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00310.MethArray.Green.T C3N-00310 CCRCC Methylation Array tumor CPT0009000006 202176290105_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 0fb9866f-3bfa-4c39-a558-a5bf591ff86f ba010e8f38afef39fb15c7ddba549678 { 'aliquot_tag': 'ALQ_643cbf2b', 'gdc_sample_type': 'Primary Tumor' } @@ -19905,12 +21673,12 @@ C3N-00310.miRNA-Seq.T C3N-00310 CCRCC miRNA-Seq tumor CPT0009000009 181012_UNC32 C3N-00310.miRNA-Seq.T.hg38 C3N-00310 CCRCC miRNA-Seq tumor CPT0009000009 0773eaae-dfd3-4ec4-a031-09bdcffe3e23_mirnaseq_gdc_realn.bam 240649743 BAM harmonized CPTAC3 ef200408-1b00-4cee-89ff-9d584fb5f07c 58e2114ebf58f2dc9df2f1729dfca857 { 'aliquot_tag': 'ALQ_f483a2ba', 'gdc_sample_type': 'Primary Tumor' } C3N-00310.RNA-Seq.chimeric.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 4e27b94c-9aa4-4d70-9671-edfdefbdf9e5.rna_seq.chimeric.gdc_realn.bam 83034842 BAM chimeric harmonized CPTAC3 1c7f97f6-2243-4569-bd58-d24e121f2e7f 12547b0431d225bf2f0e7e829c128e20 { 'aliquot_tag': 'ALQ_1efcec4b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00310.RNA-Seq.chimeric.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 a59f93e6-7578-46ee-bf3a-38bb104d5f8c.rna_seq.chimeric.gdc_realn.bam 114348129 BAM chimeric harmonized CPTAC3 f151179b-9e99-4bf3-b97f-463cae38d70a e7f6ac929340f8e103e286064bdb5152 { 'aliquot_tag': 'ALQ_f483a2ba', 'gdc_sample_type': 'Primary Tumor' } -C3N-00310.RNA-Seq.genomic.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 4e27b94c-9aa4-4d70-9671-edfdefbdf9e5.rna_seq.genomic.gdc_realn.bam 8710463686 BAM genomic harmonized CPTAC3 5f31fae3-4576-4927-bace-4f5c5f5d4059 5e548440d42a625d83309056939646bb { 'aliquot_tag': 'ALQ_1efcec4b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00310.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 a59f93e6-7578-46ee-bf3a-38bb104d5f8c.rna_seq.genomic.gdc_realn.bam 8276113536 BAM genomic harmonized CPTAC3 9d8c1dbc-e781-4af8-99e1-b82c233714d4 abc1ba9265bfaf4ca2c00fc89d28974c { 'aliquot_tag': 'ALQ_f483a2ba', 'gdc_sample_type': 'Primary Tumor' } -C3N-00310.RNA-Seq.R1_L005.A C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 171208_UNC32-K00270_0071_BHN7K5BBXX_CTTGTA_S47_L005_R1_001.fastq.gz 4000290124 FASTQ R1_L005 unaligned CPTAC3 1fb79f60-316b-4f6b-a76e-7e5656251b23 73340743efc002a10fad520dd6733e81 { 'aliquot_tag': 'ALQ_1efcec4b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00310.RNA-Seq.R1_L005.T C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L005_R1_001.fastq.gz 3879277533 FASTQ R1_L005 unaligned CPTAC3 600887e4-6350-43bd-88d8-18fde761b376 f668ebdea6ca99405d03a356ba606b9f { 'aliquot_tag': 'ALQ_f483a2ba', 'gdc_sample_type': 'Primary Tumor' } -C3N-00310.RNA-Seq.R2_L005.A C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 171208_UNC32-K00270_0071_BHN7K5BBXX_CTTGTA_S47_L005_R2_001.fastq.gz 4199768745 FASTQ R2_L005 unaligned CPTAC3 947345b1-e728-46f6-90aa-523c8d93319c bd359ef86682e56b99f7baefd1eee774 { 'aliquot_tag': 'ALQ_1efcec4b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00310.RNA-Seq.R2_L005.T C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L005_R2_001.fastq.gz 4190573018 FASTQ R2_L005 unaligned CPTAC3 76ada607-cb88-45df-9f9d-081d65b4fd98 f6937bd25f36e932aa705fea542f7610 { 'aliquot_tag': 'ALQ_f483a2ba', 'gdc_sample_type': 'Primary Tumor' } +C3N-00310.RNA-Seq.genomic.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 4e27b94c-9aa4-4d70-9671-edfdefbdf9e5.rna_seq.genomic.gdc_realn.bam 8710463686 BAM genomic harmonized CPTAC3 828b4ebe-de28-4291-a87c-caece1022dd2 5e548440d42a625d83309056939646bb { 'aliquot_tag': 'ALQ_1efcec4b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00310.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 a59f93e6-7578-46ee-bf3a-38bb104d5f8c.rna_seq.genomic.gdc_realn.bam 8276113536 BAM genomic harmonized CPTAC3 89261b2e-41ce-4c58-9846-c8b9bd7c5eb5 abc1ba9265bfaf4ca2c00fc89d28974c { 'aliquot_tag': 'ALQ_f483a2ba', 'gdc_sample_type': 'Primary Tumor' } +C3N-00310.RNA-Seq.R1_L005.A C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 171208_UNC32-K00270_0071_BHN7K5BBXX_CTTGTA_S47_L005_R1_001.fastq.gz 4000290124 FASTQ R1_L005 unaligned CPTAC3 1fb79f60-316b-4f6b-a76e-7e5656251b23 73340743efc002a10fad520dd6733e81 { 'aliquot_tag': 'ALQ_1efcec4b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00310.RNA-Seq.R1_L005.T C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L005_R1_001.fastq.gz 3879277533 FASTQ R1_L005 unaligned CPTAC3 600887e4-6350-43bd-88d8-18fde761b376 f668ebdea6ca99405d03a356ba606b9f { 'aliquot_tag': 'ALQ_f483a2ba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00310.RNA-Seq.R2_L005.A C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 171208_UNC32-K00270_0071_BHN7K5BBXX_CTTGTA_S47_L005_R2_001.fastq.gz 4199768745 FASTQ R2_L005 unaligned CPTAC3 947345b1-e728-46f6-90aa-523c8d93319c bd359ef86682e56b99f7baefd1eee774 { 'aliquot_tag': 'ALQ_1efcec4b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-00310.RNA-Seq.R2_L005.T C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L005_R2_001.fastq.gz 4190573018 FASTQ R2_L005 unaligned CPTAC3 76ada607-cb88-45df-9f9d-081d65b4fd98 f6937bd25f36e932aa705fea542f7610 { 'aliquot_tag': 'ALQ_f483a2ba', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00310.RNA-Seq.transcriptome.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal CPT0009020006 4e27b94c-9aa4-4d70-9671-edfdefbdf9e5.rna_seq.transcriptome.gdc_realn.bam 9386579310 BAM transcriptome harmonized CPTAC3 6698a504-54b7-4ceb-937f-78362aaaa3d8 f0eead221efd9f4d346a95435eb993a3 { 'aliquot_tag': 'ALQ_1efcec4b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00310.RNA-Seq.transcriptome.T.hg38 C3N-00310 CCRCC RNA-Seq tumor CPT0009000009 a59f93e6-7578-46ee-bf3a-38bb104d5f8c.rna_seq.transcriptome.gdc_realn.bam 12087048501 BAM transcriptome harmonized CPTAC3 bbda8381-fb47-476e-9b02-597728c18741 4acc35f844d9339d58bd9578ed0fe8e7 { 'aliquot_tag': 'ALQ_f483a2ba', 'gdc_sample_type': 'Primary Tumor' } C3N-00310.WGS.A C3N-00310 CCRCC WGS tissue_normal CPT0009020009 CPT0009020009.WholeGenome.RP-1303.bam 56370255974 BAM aligned CPTAC3 278af3f5-738a-455b-88ce-35198b2c2bd3 e25180a6a764eec4efab64bf8bf0b794 { 'aliquot_tag': 'ALQ_8e43f1da', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19947,22 +21715,22 @@ C3N-00312.DUP_91bc19eb.miRNA-Seq.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009040006 C3N-00312.DUP_91bc19eb.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009040006 06467550-def2-403d-9aa3-7a3a34f02dde_mirnaseq_gdc_realn.bam 307826790 BAM harmonized CPTAC3 83c105f2-09e8-4cc4-84c8-6dda3fb29b10 ba6de599dfe0f674ff37342243ffcda5 { 'aliquot_tag': 'DUP_91bc19eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00312.DUP_91bc19eb.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 d8c62a78-ff01-442a-bd93-4e4676f2c56b.rna_seq.chimeric.gdc_realn.bam 149053172 BAM chimeric harmonized CPTAC3 6157ba96-fd01-4a8d-a365-b8d645960ab9 833a11d8beb28b63f31b8159610673e6 { 'aliquot_tag': 'DUP_91bc19eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00312.DUP_91bc19eb.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 d8c62a78-ff01-442a-bd93-4e4676f2c56b.rna_seq.genomic.gdc_realn.bam 8892050908 BAM genomic harmonized CPTAC3 39e65a7b-3c72-4ea9-a9d0-8bc00732baca 41cfacc16dfe8121dc865940ffe3b010 { 'aliquot_tag': 'DUP_91bc19eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00312.DUP_91bc19eb.RNA-Seq.R1_L007.T C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACCTTGGC-GGCCTCAT_S25_L007_R1_001.fastq.gz 4289173913 FASTQ R1_L007 unaligned CPTAC3 d070b7e8-b692-4b38-a0c0-18d789197848 a0fcd2011ae7998b6f9038df384118b7 { 'aliquot_tag': 'DUP_91bc19eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00312.DUP_91bc19eb.RNA-Seq.R2_L007.T C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACCTTGGC-GGCCTCAT_S25_L007_R2_001.fastq.gz 5129448695 FASTQ R2_L007 unaligned CPTAC3 11e4bcb1-1181-41c9-b4c6-3770f2c0e93e 284493faaedaff218c37bd184482f5c5 { 'aliquot_tag': 'DUP_91bc19eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00312.DUP_91bc19eb.RNA-Seq.R1_L007.T C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACCTTGGC-GGCCTCAT_S25_L007_R1_001.fastq.gz 4289173913 FASTQ R1_L007 unaligned CPTAC3 d070b7e8-b692-4b38-a0c0-18d789197848 a0fcd2011ae7998b6f9038df384118b7 { 'aliquot_tag': 'DUP_91bc19eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3N-00312.DUP_91bc19eb.RNA-Seq.R2_L007.T C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACCTTGGC-GGCCTCAT_S25_L007_R2_001.fastq.gz 5129448695 FASTQ R2_L007 unaligned CPTAC3 11e4bcb1-1181-41c9-b4c6-3770f2c0e93e 284493faaedaff218c37bd184482f5c5 { 'aliquot_tag': 'DUP_91bc19eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3N-00312.DUP_91bc19eb.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009040006 d8c62a78-ff01-442a-bd93-4e4676f2c56b.rna_seq.transcriptome.gdc_realn.bam 11204889135 BAM transcriptome harmonized CPTAC3 c3fd8ea0-42b2-4a20-91c7-db9c750fbf78 8660e3e1f9a1f31e0b7a2ab940d5ebf0 { 'aliquot_tag': 'DUP_91bc19eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00312.DUP_acdc305b.miRNA-Seq.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009050006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATCACG_S39_L003_R1_001.unaln.bam 179291781 BAM unaligned CPTAC3 f0adc4d0-a1f3-4619-9fac-b9e1b4e77899 af2760d17ac8bd8d57b7b59c9f7f169c { 'aliquot_tag': 'DUP_acdc305b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00312.DUP_acdc305b.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009050006 5eb8e0e9-113e-4c3b-a377-23a3d4f2b9f1_mirnaseq_gdc_realn.bam 197189293 BAM harmonized CPTAC3 d4009a80-f39a-482e-a5dd-7cf139b6f87d 6a067f96334ec84489c35cc9da8cb9dc { 'aliquot_tag': 'DUP_acdc305b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00312.DUP_acdc305b.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 3e2f5442-6df9-4bf0-864a-34891bad1938.rna_seq.chimeric.gdc_realn.bam 38526134 BAM chimeric harmonized CPTAC3 e84e285b-a8ef-4768-8e9f-5e41ee60951e 2253cc464c5ad25648a7249b79ee9e79 { 'aliquot_tag': 'DUP_acdc305b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00312.DUP_acdc305b.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 3e2f5442-6df9-4bf0-864a-34891bad1938.rna_seq.genomic.gdc_realn.bam 8653829028 BAM genomic harmonized CPTAC3 35de06b6-e159-4c37-8e74-b6dcc208b233 b8d9be94e11a72e264a94af3fe189cae { 'aliquot_tag': 'DUP_acdc305b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00312.DUP_acdc305b.RNA-Seq.R1_L008.T C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATCTCG-ATCTTAGT_S30_L008_R1_001.fastq.gz 4216064401 FASTQ R1_L008 unaligned CPTAC3 84b165b3-e4c3-40a6-a2b2-be3eb9d6a968 6b5bc4b4e1bed0c28fa65d344cc277a8 { 'aliquot_tag': 'DUP_acdc305b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00312.DUP_acdc305b.RNA-Seq.R2_L008.T C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATCTCG-ATCTTAGT_S30_L008_R2_001.fastq.gz 4835120977 FASTQ R2_L008 unaligned CPTAC3 03a57298-110d-45a0-b3ab-d86ab4b11fc5 6fceb331c67c31871e07503b5ead06b4 { 'aliquot_tag': 'DUP_acdc305b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00312.DUP_acdc305b.RNA-Seq.R1_L008.T C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATCTCG-ATCTTAGT_S30_L008_R1_001.fastq.gz 4216064401 FASTQ R1_L008 unaligned CPTAC3 84b165b3-e4c3-40a6-a2b2-be3eb9d6a968 6b5bc4b4e1bed0c28fa65d344cc277a8 { 'aliquot_tag': 'DUP_acdc305b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3N-00312.DUP_acdc305b.RNA-Seq.R2_L008.T C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 200519_UNC31-K00269_0279_AHH5VTBBXY_ATATCTCG-ATCTTAGT_S30_L008_R2_001.fastq.gz 4835120977 FASTQ R2_L008 unaligned CPTAC3 03a57298-110d-45a0-b3ab-d86ab4b11fc5 6fceb331c67c31871e07503b5ead06b4 { 'aliquot_tag': 'DUP_acdc305b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3N-00312.DUP_acdc305b.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009050006 3e2f5442-6df9-4bf0-864a-34891bad1938.rna_seq.transcriptome.gdc_realn.bam 11379932007 BAM transcriptome harmonized CPTAC3 1b2354b5-ad22-4da5-b48b-fcaf04a85ad2 a8677afff03282a46ee0fbe11353edc4 { 'aliquot_tag': 'DUP_acdc305b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00312.DUP_d61c633b.miRNA-Seq.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009070006 200526_UNC32-K00270_0248_BHH7WFBBXY_TTAGGC_S47_L003_R1_001.unaln.bam 238687856 BAM unaligned CPTAC3 68f4c186-2b34-4e5a-9aa5-eff96f1d2a6a 15d5f981909a5b9f5716b6f73c785cc5 { 'aliquot_tag': 'DUP_d61c633b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00312.DUP_d61c633b.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009070006 a21e894a-5524-4657-bfd3-bdfae8c7c46b_mirnaseq_gdc_realn.bam 259906942 BAM harmonized CPTAC3 fdc1c5a9-b39b-4e9a-a4bb-c6d37a4b9c06 6242e9ec6b0f1074534d853dcd9ade09 { 'aliquot_tag': 'DUP_d61c633b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00312.DUP_d61c633b.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 510b2b04-a8f4-4d7d-887e-5d34381a43ce.rna_seq.chimeric.gdc_realn.bam 53048031 BAM chimeric harmonized CPTAC3 b3de330c-7c22-4e02-ac9b-2d52fee8bb7e d471a41aab8e1fc92aa1f3cc0e8c3940 { 'aliquot_tag': 'DUP_d61c633b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00312.DUP_d61c633b.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 510b2b04-a8f4-4d7d-887e-5d34381a43ce.rna_seq.genomic.gdc_realn.bam 8264769099 BAM genomic harmonized CPTAC3 063c919a-b61d-4a49-8af0-41b0b7d0beb2 e3de49e1cfed9bc8e333c585d6519583 { 'aliquot_tag': 'DUP_d61c633b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00312.DUP_d61c633b.RNA-Seq.R1_L008.T C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 200519_UNC31-K00269_0279_AHH5VTBBXY_AACAGGTT-ATACCAAG_S29_L008_R1_001.fastq.gz 4094831538 FASTQ R1_L008 unaligned CPTAC3 df7a710b-9006-452d-a356-5300dff4bb75 e51a87b1f0b4c4946f032fbd3fd2e697 { 'aliquot_tag': 'DUP_d61c633b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00312.DUP_d61c633b.RNA-Seq.R2_L008.T C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 200519_UNC31-K00269_0279_AHH5VTBBXY_AACAGGTT-ATACCAAG_S29_L008_R2_001.fastq.gz 4648781248 FASTQ R2_L008 unaligned CPTAC3 ef8985af-993b-4c92-8651-d8e0102c4605 bd9d0f46976d283aec123ab1382fd6ab { 'aliquot_tag': 'DUP_d61c633b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00312.DUP_d61c633b.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 510b2b04-a8f4-4d7d-887e-5d34381a43ce.rna_seq.genomic.gdc_realn.bam 8264769099 BAM genomic harmonized CPTAC3 c9dd9ba9-0209-4765-a76f-76fd8fd049e0 e3de49e1cfed9bc8e333c585d6519583 { 'aliquot_tag': 'DUP_d61c633b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00312.DUP_d61c633b.RNA-Seq.R1_L008.T C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 200519_UNC31-K00269_0279_AHH5VTBBXY_AACAGGTT-ATACCAAG_S29_L008_R1_001.fastq.gz 4094831538 FASTQ R1_L008 unaligned CPTAC3 df7a710b-9006-452d-a356-5300dff4bb75 e51a87b1f0b4c4946f032fbd3fd2e697 { 'aliquot_tag': 'DUP_d61c633b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3N-00312.DUP_d61c633b.RNA-Seq.R2_L008.T C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 200519_UNC31-K00269_0279_AHH5VTBBXY_AACAGGTT-ATACCAAG_S29_L008_R2_001.fastq.gz 4648781248 FASTQ R2_L008 unaligned CPTAC3 ef8985af-993b-4c92-8651-d8e0102c4605 bd9d0f46976d283aec123ab1382fd6ab { 'aliquot_tag': 'DUP_d61c633b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3N-00312.DUP_d61c633b.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009070006 510b2b04-a8f4-4d7d-887e-5d34381a43ce.rna_seq.transcriptome.gdc_realn.bam 11193751888 BAM transcriptome harmonized CPTAC3 74e7fb19-cfed-491c-9227-a29720c807c2 8de698590b65a62d44709913a71bef73 { 'aliquot_tag': 'DUP_d61c633b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00312.MethArray.Green.A C3N-00312 CCRCC Methylation Array tissue_normal CPT0009080009 204930640023_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 5c8fed49-1977-42f3-bb50-29dcf039e1f4 285aa49a14a101ab3e30c3303fd7c3cd { 'aliquot_tag': 'ALQ_c4f3e97b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00312.MethArray.Green.T C3N-00312 CCRCC Methylation Array tumor CPT0009060006 202184990057_R02C01_Grn.idat 13676216 IDAT Green NA CPTAC3 03a40d78-0a3b-421a-8fd9-1074982d5f1e 99d05e9eaaf254d2118a4273106b74bd { 'aliquot_tag': 'ALQ_eb7c4a8b', 'gdc_sample_type': 'Primary Tumor' } @@ -19972,8 +21740,8 @@ C3N-00312.miRNA-Seq.T C3N-00312 CCRCC miRNA-Seq tumor CPT0009060009 181012_UNC32 C3N-00312.miRNA-Seq.T.hg38 C3N-00312 CCRCC miRNA-Seq tumor CPT0009060009 68ebfe5b-e4b9-4a70-92f1-3a2a455e3934_mirnaseq_gdc_realn.bam 246278840 BAM harmonized CPTAC3 d9233492-ff75-4528-8ddc-1ac40197b297 76336c85f8e2f61407fc7c986cc93877 { 'aliquot_tag': 'ALQ_7bc3571a', 'gdc_sample_type': 'Primary Tumor' } C3N-00312.RNA-Seq.chimeric.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 f77bd109-d37e-4c0d-ace8-dd82b5732dec.rna_seq.chimeric.gdc_realn.bam 187175014 BAM chimeric harmonized CPTAC3 b3f83a8d-09d4-4d3f-8716-a531837f2096 85b9474c81d1ea6ed482480684ddad21 { 'aliquot_tag': 'ALQ_7bc3571a', 'gdc_sample_type': 'Primary Tumor' } C3N-00312.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 f77bd109-d37e-4c0d-ace8-dd82b5732dec.rna_seq.genomic.gdc_realn.bam 8850515841 BAM genomic harmonized CPTAC3 667fdb3c-a487-47da-820f-959c71652c66 c10c2e0a2d45eb624b88307c5f5b1eea { 'aliquot_tag': 'ALQ_7bc3571a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00312.RNA-Seq.R1_L005.T C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L005_R1_001.fastq.gz 4379179377 FASTQ R1_L005 unaligned CPTAC3 b6017636-1179-4a19-976d-8a4ff24a550d 74b849adc1ede7c4b4893a8070a2f950 { 'aliquot_tag': 'ALQ_7bc3571a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00312.RNA-Seq.R2_L005.T C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L005_R2_001.fastq.gz 4745246185 FASTQ R2_L005 unaligned CPTAC3 73499178-bbb1-43cf-969b-120c4503f709 aeddc28d905945417f212f866a04e012 { 'aliquot_tag': 'ALQ_7bc3571a', 'gdc_sample_type': 'Primary Tumor' } +C3N-00312.RNA-Seq.R1_L005.T C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L005_R1_001.fastq.gz 4379179377 FASTQ R1_L005 unaligned CPTAC3 b6017636-1179-4a19-976d-8a4ff24a550d 74b849adc1ede7c4b4893a8070a2f950 { 'aliquot_tag': 'ALQ_7bc3571a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00312.RNA-Seq.R2_L005.T C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L005_R2_001.fastq.gz 4745246185 FASTQ R2_L005 unaligned CPTAC3 73499178-bbb1-43cf-969b-120c4503f709 aeddc28d905945417f212f866a04e012 { 'aliquot_tag': 'ALQ_7bc3571a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00312.RNA-Seq.transcriptome.T.hg38 C3N-00312 CCRCC RNA-Seq tumor CPT0009060009 f77bd109-d37e-4c0d-ace8-dd82b5732dec.rna_seq.transcriptome.gdc_realn.bam 11227723582 BAM transcriptome harmonized CPTAC3 da9a1c91-be98-466f-96e1-1f1de2055d82 05d5ba704219afdec90c500776deb5a4 { 'aliquot_tag': 'ALQ_7bc3571a', 'gdc_sample_type': 'Primary Tumor' } C3N-00312.WGS.A C3N-00312 CCRCC WGS tissue_normal CPT0009080009 CPT0009080009.WholeGenome.RP-1303.bam 57491964931 BAM aligned CPTAC3 bb6f3c20-02f3-4b65-8a1d-af8ebb69653d a790efb65d4a803e5c5a323098dfea3a { 'aliquot_tag': 'ALQ_c4f3e97b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00312.WGS.A.hg38 C3N-00312 CCRCC WGS tissue_normal CPT0009080009 c2ccc81a-f952-4d49-bfa9-81f43c97a55b_wgs_gdc_realn.bam 84005456632 BAM harmonized CPTAC3 4fc6bb78-163a-4d98-939e-a881515a7141 b051cd91271fef7cbad2848d687c7bcf { 'aliquot_tag': 'ALQ_c4f3e97b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -19993,8 +21761,8 @@ C3N-00313.miRNA-Seq.T C3N-00313 CCRCC miRNA-Seq tumor CPT0011410006 180924_UNC31 C3N-00313.miRNA-Seq.T.hg38 C3N-00313 CCRCC miRNA-Seq tumor CPT0011410006 aa0a94e0-5a77-472a-b7ce-03d14824b8f2_mirnaseq_gdc_realn.bam 237206126 BAM harmonized CPTAC3 c2d6725c-96ba-4e68-a5f6-0778d173ad2b 47f839b127e33935fb9d5d1d11918f47 { 'aliquot_tag': 'ALQ_3d889a74', 'gdc_sample_type': 'Primary Tumor' } C3N-00313.RNA-Seq.chimeric.T.hg38 C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 6b8bc62b-c2a0-43b0-89de-b486a59da841.rna_seq.chimeric.gdc_realn.bam 58296975 BAM chimeric harmonized CPTAC3 526030a8-27e8-41bd-9281-25890123a8e1 ac8f112be829726906d51b8b4ed2ad59 { 'aliquot_tag': 'ALQ_3d889a74', 'gdc_sample_type': 'Primary Tumor' } C3N-00313.RNA-Seq.genomic.T.hg38 C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 6b8bc62b-c2a0-43b0-89de-b486a59da841.rna_seq.genomic.gdc_realn.bam 6935536095 BAM genomic harmonized CPTAC3 27ebcdee-4b37-4369-aa3f-5d18d03b40e6 3aa62784a48b3037aebbcc360250ad59 { 'aliquot_tag': 'ALQ_3d889a74', 'gdc_sample_type': 'Primary Tumor' } -C3N-00313.RNA-Seq.R1_L001.T C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L001_R1_001.fastq.gz 3321955238 FASTQ R1_L001 unaligned CPTAC3 888407ac-0be1-41a3-a05f-b76beba5d59c b74d3b8cfa08017f50926410168ee771 { 'aliquot_tag': 'ALQ_3d889a74', 'gdc_sample_type': 'Primary Tumor' } -C3N-00313.RNA-Seq.R2_L001.T C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L001_R2_001.fastq.gz 3621783704 FASTQ R2_L001 unaligned CPTAC3 d0634734-0ce4-431a-8003-94d6f61fcc26 be7e692adf38018569f8851cc52e961c { 'aliquot_tag': 'ALQ_3d889a74', 'gdc_sample_type': 'Primary Tumor' } +C3N-00313.RNA-Seq.R1_L001.T C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L001_R1_001.fastq.gz 3321955238 FASTQ R1_L001 unaligned CPTAC3 888407ac-0be1-41a3-a05f-b76beba5d59c b74d3b8cfa08017f50926410168ee771 { 'aliquot_tag': 'ALQ_3d889a74', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00313.RNA-Seq.R2_L001.T C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L001_R2_001.fastq.gz 3621783704 FASTQ R2_L001 unaligned CPTAC3 d0634734-0ce4-431a-8003-94d6f61fcc26 be7e692adf38018569f8851cc52e961c { 'aliquot_tag': 'ALQ_3d889a74', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-00313.RNA-Seq.transcriptome.T.hg38 C3N-00313 CCRCC RNA-Seq tumor CPT0011410006 6b8bc62b-c2a0-43b0-89de-b486a59da841.rna_seq.transcriptome.gdc_realn.bam 8553107440 BAM transcriptome harmonized CPTAC3 2f4671c8-dbe7-4d8b-b80a-5513fe564415 ed0f37679e4dcc50298987c31ebd8667 { 'aliquot_tag': 'ALQ_3d889a74', 'gdc_sample_type': 'Primary Tumor' } C3N-00313.WGS.N C3N-00313 CCRCC WGS blood_normal CPT0012040002 CPT0012040002.WholeGenome.RP-1303.bam 61278918380 BAM aligned CPTAC3 71572d05-76e3-400a-829e-8c525cb9b272 6d904bbe542d67a82d834ae88a614a4e { 'aliquot_tag': 'ALQ_587c8996', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00313.WGS.N.hg38 C3N-00313 CCRCC WGS blood_normal CPT0012040002 630eaa51-5b9c-4f0e-82c7-2494669109ad_gdc_realn.bam 86581602388 BAM harmonized CPTAC3 965262a1-98a2-4d8b-b9a2-f4267c2a9355 668d152a4f539a91f44b30173f24ac20 { 'aliquot_tag': 'ALQ_587c8996', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20007,9 +21775,9 @@ C3N-00313.WXS.T.hg38 C3N-00313 CCRCC WXS tumor CPT0011410009 cd7a208e-7acf-4a1b- C3N-00314.DUP_1aa061e.miRNA-Seq.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012070016 200526_UNC32-K00270_0248_BHH7WFBBXY_CGTACG_S29_L002_R1_001.unaln.bam 276790761 BAM unaligned CPTAC3 0447b26b-9012-463b-b112-7849fb478c36 ed8959f3b163ec4fbbda148bca276862 { 'aliquot_tag': 'DUP_1aa061e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.DUP_1aa061e.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012070016 8a1fe468-f020-4eb3-9587-e3c1febef7d4_mirnaseq_gdc_realn.bam 302244831 BAM harmonized CPTAC3 c046f722-7b91-44b6-872c-f056ebade73a db8353bfdc11ce58a243fc32448372ed { 'aliquot_tag': 'DUP_1aa061e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.DUP_1aa061e.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 b1e4d9ed-12e9-4209-91b7-d936fa0261e3.rna_seq.chimeric.gdc_realn.bam 80445759 BAM chimeric harmonized CPTAC3 e5d3a432-25be-4258-b99b-5e70c6e955d9 9ff4550b8c4b7f3950688ea25e4efb63 { 'aliquot_tag': 'DUP_1aa061e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00314.DUP_1aa061e.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 b1e4d9ed-12e9-4209-91b7-d936fa0261e3.rna_seq.genomic.gdc_realn.bam 8221215602 BAM genomic harmonized CPTAC3 8c243d6f-7d90-466c-a529-a9bae9bdcec9 b5a97823d449b9df25ac2d48f323b92e { 'aliquot_tag': 'DUP_1aa061e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00314.DUP_1aa061e.RNA-Seq.R1_L005.T C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 200519_UNC31-K00269_0280_BHHKGNBBXY_ATTGTGAA-TGCATTGC_S18_L005_R1_001.fastq.gz 3676262046 FASTQ R1_L005 unaligned CPTAC3 56c717c7-89d0-4cd8-a638-13cf9d2bbbf9 20f7a8f41f85707839764aeb019f0a0a { 'aliquot_tag': 'DUP_1aa061e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00314.DUP_1aa061e.RNA-Seq.R2_L005.T C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 200519_UNC31-K00269_0280_BHHKGNBBXY_ATTGTGAA-TGCATTGC_S18_L005_R2_001.fastq.gz 4386649159 FASTQ R2_L005 unaligned CPTAC3 585db18c-cf35-4df6-a337-bd5b93acd691 0d240c9db42eec4e9952672bd874e69b { 'aliquot_tag': 'DUP_1aa061e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00314.DUP_1aa061e.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 b1e4d9ed-12e9-4209-91b7-d936fa0261e3.rna_seq.genomic.gdc_realn.bam 8221215602 BAM genomic harmonized CPTAC3 84428c0a-ad5d-42ba-be3b-642dec13e29d b5a97823d449b9df25ac2d48f323b92e { 'aliquot_tag': 'DUP_1aa061e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00314.DUP_1aa061e.RNA-Seq.R1_L005.T C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 200519_UNC31-K00269_0280_BHHKGNBBXY_ATTGTGAA-TGCATTGC_S18_L005_R1_001.fastq.gz 3676262046 FASTQ R1_L005 unaligned CPTAC3 56c717c7-89d0-4cd8-a638-13cf9d2bbbf9 20f7a8f41f85707839764aeb019f0a0a { 'aliquot_tag': 'DUP_1aa061e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3N-00314.DUP_1aa061e.RNA-Seq.R2_L005.T C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 200519_UNC31-K00269_0280_BHHKGNBBXY_ATTGTGAA-TGCATTGC_S18_L005_R2_001.fastq.gz 4386649159 FASTQ R2_L005 unaligned CPTAC3 585db18c-cf35-4df6-a337-bd5b93acd691 0d240c9db42eec4e9952672bd874e69b { 'aliquot_tag': 'DUP_1aa061e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3N-00314.DUP_1aa061e.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012070016 b1e4d9ed-12e9-4209-91b7-d936fa0261e3.rna_seq.transcriptome.gdc_realn.bam 8871692125 BAM transcriptome harmonized CPTAC3 bf4d0054-5687-42dd-b494-5078f19a51aa 22f511bd946cbb370f0e787a6f4890be { 'aliquot_tag': 'DUP_1aa061e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.DUP_3ba7ebb7.MethArray.Green.T C3N-00314 CCRCC Methylation Array tumor CPT0012060012 204372030014_R08C01_Grn.idat 13677895 IDAT Green NA CPTAC3 016a3f0a-e25b-46f2-a4ee-e11437fff544 09cfaf4f0cb4f7cb91f7d82b65d7461b { 'aliquot_tag': 'DUP_3ba7ebb7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.DUP_3ba7ebb7.MethArray.Red.T C3N-00314 CCRCC Methylation Array tumor CPT0012060012 204372030014_R08C01_Red.idat 13677895 IDAT Red NA CPTAC3 7a55380e-03d8-4c7f-ba72-d04075453e71 248f0a55ae275dca59a37464ee22a4bf { 'aliquot_tag': 'DUP_3ba7ebb7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -20026,9 +21794,9 @@ C3N-00314.DUP_9fce93bd.WXS.T.hg38 C3N-00314 CCRCC WXS tumor CPT0012070011 e68401 C3N-00314.DUP_b56e037e.miRNA-Seq.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012060009 200526_UNC32-K00270_0248_BHH7WFBBXY_CTTGTA_S41_L005_R1_001.unaln.bam 245374097 BAM unaligned CPTAC3 8369d9f5-5d8a-4267-8ead-eec2a46f9589 9e23bc984438e5db96c1d922977be60f { 'aliquot_tag': 'DUP_b56e037e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.DUP_b56e037e.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012060009 7ec69b1c-b582-42c6-aa0a-90359916d5b9_mirnaseq_gdc_realn.bam 268079605 BAM harmonized CPTAC3 a73668e4-caad-4069-baa8-357126783f29 d519b4e61d4ea5153128d3feee2c1bef { 'aliquot_tag': 'DUP_b56e037e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.DUP_b56e037e.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 0e31156c-0fab-4a0b-b72d-d572c4b97a4c.rna_seq.chimeric.gdc_realn.bam 240084679 BAM chimeric harmonized CPTAC3 eeca01bc-34a6-4dcf-8dd6-bff7abade56f c62260dab46f640eae14d1659aedf493 { 'aliquot_tag': 'DUP_b56e037e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00314.DUP_b56e037e.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 0e31156c-0fab-4a0b-b72d-d572c4b97a4c.rna_seq.genomic.gdc_realn.bam 7611587497 BAM genomic harmonized CPTAC3 7b6b955c-db5b-40e2-9acf-6052f039e5cc 482672ded610ca62dfaea3ad4836a05b { 'aliquot_tag': 'DUP_b56e037e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00314.DUP_b56e037e.RNA-Seq.R1_L006.T C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 200518_UNC32-K00270_0247_AHH573BBXY_CTCTCGTC-TATAACCT_S36_L006_R1_001.fastq.gz 3443358409 FASTQ R1_L006 unaligned CPTAC3 a7e3bd23-6487-47ac-a2a2-7d2d12f94240 c4d60186f533ac855ec50e905790c716 { 'aliquot_tag': 'DUP_b56e037e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00314.DUP_b56e037e.RNA-Seq.R2_L006.T C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 200518_UNC32-K00270_0247_AHH573BBXY_CTCTCGTC-TATAACCT_S36_L006_R2_001.fastq.gz 4052867811 FASTQ R2_L006 unaligned CPTAC3 4925b454-cfe4-4889-8753-5bbf48c6ad61 57a7659a2a6e526ce9981818bafa19fa { 'aliquot_tag': 'DUP_b56e037e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00314.DUP_b56e037e.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 0e31156c-0fab-4a0b-b72d-d572c4b97a4c.rna_seq.genomic.gdc_realn.bam 7611587497 BAM genomic harmonized CPTAC3 b764fd41-0e3e-49f6-ba91-fac5c79c38f4 482672ded610ca62dfaea3ad4836a05b { 'aliquot_tag': 'DUP_b56e037e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00314.DUP_b56e037e.RNA-Seq.R1_L006.T C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 200518_UNC32-K00270_0247_AHH573BBXY_CTCTCGTC-TATAACCT_S36_L006_R1_001.fastq.gz 3443358409 FASTQ R1_L006 unaligned CPTAC3 a7e3bd23-6487-47ac-a2a2-7d2d12f94240 c4d60186f533ac855ec50e905790c716 { 'aliquot_tag': 'DUP_b56e037e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3N-00314.DUP_b56e037e.RNA-Seq.R2_L006.T C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 200518_UNC32-K00270_0247_AHH573BBXY_CTCTCGTC-TATAACCT_S36_L006_R2_001.fastq.gz 4052867811 FASTQ R2_L006 unaligned CPTAC3 4925b454-cfe4-4889-8753-5bbf48c6ad61 57a7659a2a6e526ce9981818bafa19fa { 'aliquot_tag': 'DUP_b56e037e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3N-00314.DUP_b56e037e.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012060009 0e31156c-0fab-4a0b-b72d-d572c4b97a4c.rna_seq.transcriptome.gdc_realn.bam 7934663645 BAM transcriptome harmonized CPTAC3 d24e4c7c-40af-4eef-a67c-f0da52b5bdac 98726711bedcd89f83d94dbeed610e1c { 'aliquot_tag': 'DUP_b56e037e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.DUP_f2ce79ae.MethArray.Green.T C3N-00314 CCRCC Methylation Array tumor CPT0012050009 204367490048_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7bf56131-57e1-481a-8134-d154e9717a3c bd882d8da2cb41b447468706bbd4f249 { 'aliquot_tag': 'DUP_f2ce79ae', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.DUP_f2ce79ae.MethArray.Red.T C3N-00314 CCRCC Methylation Array tumor CPT0012050009 204367490048_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 b3966211-6115-4064-886e-5d7ef6f50456 9016aae05b80a24b7e8df218cf827a49 { 'aliquot_tag': 'DUP_f2ce79ae', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -20039,9 +21807,9 @@ C3N-00314.DUP_f2ce79ae.WXS.T.hg38 C3N-00314 CCRCC WXS tumor CPT0012050009 61a1bd C3N-00314.DUP_fb783585.miRNA-Seq.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012050005 200526_UNC32-K00270_0248_BHH7WFBBXY_GTAGAG_S31_L002_R1_001.unaln.bam 182961498 BAM unaligned CPTAC3 281233ae-ba2f-49a8-8092-9647f268701e ee65a27bb14c1a7c0b5aa478cbb21e5d { 'aliquot_tag': 'DUP_fb783585', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.DUP_fb783585.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012050005 3ac66e76-e7e9-4c37-aedf-a92ad6a4ff1f_mirnaseq_gdc_realn.bam 202747221 BAM harmonized CPTAC3 144f754c-70c7-4717-80d7-9930ecbb75b3 6141a26308491570eb6d23cf0971340b { 'aliquot_tag': 'DUP_fb783585', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.DUP_fb783585.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 18861a47-e6bf-4ff3-993b-f38d0e176737.rna_seq.chimeric.gdc_realn.bam 46110621 BAM chimeric harmonized CPTAC3 45972d5b-f7a7-4cec-b828-e3f48ce9ff5c c468144c1b336346d141aba64eae857d { 'aliquot_tag': 'DUP_fb783585', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00314.DUP_fb783585.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 18861a47-e6bf-4ff3-993b-f38d0e176737.rna_seq.genomic.gdc_realn.bam 9318434702 BAM genomic harmonized CPTAC3 8e91e77e-0c63-46ef-a1c8-71b5fc5037aa 165b9a6f2ff543f3f6679da61719ce3a { 'aliquot_tag': 'DUP_fb783585', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00314.DUP_fb783585.RNA-Seq.R1_L004.T C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 200519_UNC31-K00269_0280_BHHKGNBBXY_ACACTAAG-ATCCATAT_S13_L004_R1_001.fastq.gz 4263636590 FASTQ R1_L004 unaligned CPTAC3 a046126a-c032-452a-bb72-6d2f0a1c2df3 1cd981a2c70299407f9ab4f691d53220 { 'aliquot_tag': 'DUP_fb783585', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00314.DUP_fb783585.RNA-Seq.R2_L004.T C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 200519_UNC31-K00269_0280_BHHKGNBBXY_ACACTAAG-ATCCATAT_S13_L004_R2_001.fastq.gz 4968549870 FASTQ R2_L004 unaligned CPTAC3 b3fedb93-436d-4d78-9e32-444b0ae2c98a d92581a79f809b992cb29f7a6bab6c78 { 'aliquot_tag': 'DUP_fb783585', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00314.DUP_fb783585.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 18861a47-e6bf-4ff3-993b-f38d0e176737.rna_seq.genomic.gdc_realn.bam 9318434702 BAM genomic harmonized CPTAC3 d2588708-a06d-43a6-af42-ee888a5ae229 165b9a6f2ff543f3f6679da61719ce3a { 'aliquot_tag': 'DUP_fb783585', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00314.DUP_fb783585.RNA-Seq.R1_L004.T C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 200519_UNC31-K00269_0280_BHHKGNBBXY_ACACTAAG-ATCCATAT_S13_L004_R1_001.fastq.gz 4263636590 FASTQ R1_L004 unaligned CPTAC3 a046126a-c032-452a-bb72-6d2f0a1c2df3 1cd981a2c70299407f9ab4f691d53220 { 'aliquot_tag': 'DUP_fb783585', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3N-00314.DUP_fb783585.RNA-Seq.R2_L004.T C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 200519_UNC31-K00269_0280_BHHKGNBBXY_ACACTAAG-ATCCATAT_S13_L004_R2_001.fastq.gz 4968549870 FASTQ R2_L004 unaligned CPTAC3 b3fedb93-436d-4d78-9e32-444b0ae2c98a d92581a79f809b992cb29f7a6bab6c78 { 'aliquot_tag': 'DUP_fb783585', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3N-00314.DUP_fb783585.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012050005 18861a47-e6bf-4ff3-993b-f38d0e176737.rna_seq.transcriptome.gdc_realn.bam 10316563363 BAM transcriptome harmonized CPTAC3 7948e940-994b-49ce-bd2c-69efa75a9c1a 80c5423275afb63280d5d4c9d1a5c70a { 'aliquot_tag': 'DUP_fb783585', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00314.MethArray.Green.A C3N-00314 CCRCC Methylation Array tissue_normal CPT0012090009 204930630040_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2b632613-9f2f-4946-aa58-b105168fff5c 30a1b360d9a1f030964b884670466394 { 'aliquot_tag': 'ALQ_373e94af', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00314.MethArray.Green.T C3N-00314 CCRCC Methylation Array tumor CPT0012080009 202184990057_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 8525ba4b-702d-40e4-a786-ca992b7e451a 1cc5b96c6faffb9a737677e89402692e { 'aliquot_tag': 'ALQ_a5ebd1f', 'gdc_sample_type': 'Primary Tumor' } @@ -20053,12 +21821,12 @@ C3N-00314.miRNA-Seq.T C3N-00314 CCRCC miRNA-Seq tumor CPT0012080006 180924_UNC31 C3N-00314.miRNA-Seq.T.hg38 C3N-00314 CCRCC miRNA-Seq tumor CPT0012080006 2115ca6a-507e-49b7-a1ad-91a21373a32e_mirnaseq_gdc_realn.bam 365102772 BAM harmonized CPTAC3 7cf14d87-daa6-4f8f-b72b-d05cca3d6cbb 67471949db4dff7f891a36d0c8a89fe5 { 'aliquot_tag': 'ALQ_9ae1a08e', 'gdc_sample_type': 'Primary Tumor' } C3N-00314.RNA-Seq.chimeric.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 6bbe97bd-ee1e-493c-ae25-40450bb922bc.rna_seq.chimeric.gdc_realn.bam 84208705 BAM chimeric harmonized CPTAC3 e5269016-10ed-4b92-9db1-db8eb27353f6 af9aba642129d1bec8652b32262e10ab { 'aliquot_tag': 'ALQ_cef04cf0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00314.RNA-Seq.chimeric.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 32b90d42-f618-4d6e-a034-b10d28087ae0.rna_seq.chimeric.gdc_realn.bam 62192412 BAM chimeric harmonized CPTAC3 c1904750-fea8-47e7-8b53-3afae963abc8 9055608dee25da2c2360d06f1e04cd66 { 'aliquot_tag': 'ALQ_9ae1a08e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00314.RNA-Seq.genomic.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 6bbe97bd-ee1e-493c-ae25-40450bb922bc.rna_seq.genomic.gdc_realn.bam 10296757393 BAM genomic harmonized CPTAC3 8f1a75f2-5225-46b3-8b32-de63b3b76efe 47c36356e4e50c9a94d2dbc7c27d093b { 'aliquot_tag': 'ALQ_cef04cf0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00314.RNA-Seq.genomic.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 6bbe97bd-ee1e-493c-ae25-40450bb922bc.rna_seq.genomic.gdc_realn.bam 10296757393 BAM genomic harmonized CPTAC3 fddb320f-86a1-4e54-af8d-b81c670ea708 47c36356e4e50c9a94d2dbc7c27d093b { 'aliquot_tag': 'ALQ_cef04cf0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00314.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 32b90d42-f618-4d6e-a034-b10d28087ae0.rna_seq.genomic.gdc_realn.bam 5572900303 BAM genomic harmonized CPTAC3 75f17447-e096-4f85-8f98-0fa8bfb6866f 08fda3305067b82d3569b99c7164dbc0 { 'aliquot_tag': 'ALQ_9ae1a08e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00314.RNA-Seq.R1_L005.T C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTCCGC_S20_L005_R1_001.fastq.gz 2472197253 FASTQ R1_L005 unaligned CPTAC3 96b6f505-80d0-448f-820d-06892f3487cb 7319fde4a600747f70d7297c6c662993 { 'aliquot_tag': 'ALQ_9ae1a08e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00314.RNA-Seq.R1_L007.A C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTTCC_S38_L007_R1_001.fastq.gz 4282128674 FASTQ R1_L007 unaligned CPTAC3 29804040-bbf0-4206-9e79-6150a33fb325 96881e19ab7ee62e2e03ee7b014b45c3 { 'aliquot_tag': 'ALQ_cef04cf0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00314.RNA-Seq.R2_L005.T C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTCCGC_S20_L005_R2_001.fastq.gz 2736831042 FASTQ R2_L005 unaligned CPTAC3 01dbf604-7941-4bd4-9671-8d1ee780ee7a caa1f62cc70b60ec40a22a9fb09d0a4a { 'aliquot_tag': 'ALQ_9ae1a08e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00314.RNA-Seq.R2_L007.A C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTTCC_S38_L007_R2_001.fastq.gz 4601135914 FASTQ R2_L007 unaligned CPTAC3 b49b449f-cc83-4690-9346-a6b4ec327900 7a47b7873f7c141263a383c7f256707b { 'aliquot_tag': 'ALQ_cef04cf0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00314.RNA-Seq.R1_L005.T C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTCCGC_S20_L005_R1_001.fastq.gz 2472197253 FASTQ R1_L005 unaligned CPTAC3 96b6f505-80d0-448f-820d-06892f3487cb 7319fde4a600747f70d7297c6c662993 { 'aliquot_tag': 'ALQ_9ae1a08e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00314.RNA-Seq.R1_L007.A C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTTCC_S38_L007_R1_001.fastq.gz 4282128674 FASTQ R1_L007 unaligned CPTAC3 29804040-bbf0-4206-9e79-6150a33fb325 96881e19ab7ee62e2e03ee7b014b45c3 { 'aliquot_tag': 'ALQ_cef04cf0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-00314.RNA-Seq.R2_L005.T C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTCCGC_S20_L005_R2_001.fastq.gz 2736831042 FASTQ R2_L005 unaligned CPTAC3 01dbf604-7941-4bd4-9671-8d1ee780ee7a caa1f62cc70b60ec40a22a9fb09d0a4a { 'aliquot_tag': 'ALQ_9ae1a08e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00314.RNA-Seq.R2_L007.A C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTTCC_S38_L007_R2_001.fastq.gz 4601135914 FASTQ R2_L007 unaligned CPTAC3 b49b449f-cc83-4690-9346-a6b4ec327900 7a47b7873f7c141263a383c7f256707b { 'aliquot_tag': 'ALQ_cef04cf0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-00314.RNA-Seq.transcriptome.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal CPT0012090013 6bbe97bd-ee1e-493c-ae25-40450bb922bc.rna_seq.transcriptome.gdc_realn.bam 8595119063 BAM transcriptome harmonized CPTAC3 df7f0000-b1db-4ad3-9c1d-53bfb567ba82 8e564115d3e7873ba9120feb8c595507 { 'aliquot_tag': 'ALQ_cef04cf0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00314.RNA-Seq.transcriptome.T.hg38 C3N-00314 CCRCC RNA-Seq tumor CPT0012080006 32b90d42-f618-4d6e-a034-b10d28087ae0.rna_seq.transcriptome.gdc_realn.bam 6303688009 BAM transcriptome harmonized CPTAC3 3f5a8589-f2fd-4124-83bd-d19fabcf44dc 9d8933d9e57fde9539beaa37d1ed1412 { 'aliquot_tag': 'ALQ_9ae1a08e', 'gdc_sample_type': 'Primary Tumor' } C3N-00314.WGS.A C3N-00314 CCRCC WGS tissue_normal CPT0012090009 CPT0012090009.WholeGenome.RP-1303.bam 73654891996 BAM aligned CPTAC3 c33681ed-d81e-48f2-981b-fc8a93fb8bf0 26c719da303783bf10d8aebcd5415282 { 'aliquot_tag': 'ALQ_373e94af', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20079,8 +21847,8 @@ C3N-00315.miRNA-Seq.T C3N-00315 CCRCC miRNA-Seq tumor CPT0012180006 180924_UNC31 C3N-00315.miRNA-Seq.T.hg38 C3N-00315 CCRCC miRNA-Seq tumor CPT0012180006 d1f23e30-8d2c-47aa-96af-a3c21b10203a_mirnaseq_gdc_realn.bam 210365606 BAM harmonized CPTAC3 182ecb2b-b008-4a67-88f3-badf39c4fbc6 56cd4dfbf380559ba487bdb4cbb15a70 { 'aliquot_tag': 'ALQ_51bd732b', 'gdc_sample_type': 'Primary Tumor' } C3N-00315.RNA-Seq.chimeric.T.hg38 C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 ed0341d8-ee8e-4c97-aebc-acd6a8671f62.rna_seq.chimeric.gdc_realn.bam 83008008 BAM chimeric harmonized CPTAC3 73545d64-182b-4d38-b719-43dc554415bd 1b80ade61c32954aac8d1364435685b1 { 'aliquot_tag': 'ALQ_51bd732b', 'gdc_sample_type': 'Primary Tumor' } C3N-00315.RNA-Seq.genomic.T.hg38 C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 ed0341d8-ee8e-4c97-aebc-acd6a8671f62.rna_seq.genomic.gdc_realn.bam 9935887951 BAM genomic harmonized CPTAC3 eb142ecb-0d39-43f1-a249-13f465036a17 a4367d1ffa554d8a79ae44e23a1364bf { 'aliquot_tag': 'ALQ_51bd732b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00315.RNA-Seq.R1_L005.T C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGAAA_S17_L005_R1_001.fastq.gz 4635214588 FASTQ R1_L005 unaligned CPTAC3 0cc4eef5-1c17-47c0-b859-7f6cffcfd680 7aafb59e1b8450971813ded457fb0a13 { 'aliquot_tag': 'ALQ_51bd732b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00315.RNA-Seq.R2_L005.T C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 4819981461 FASTQ R2_L005 unaligned CPTAC3 08d6200f-2755-4eff-b345-7fa1a68d82dc 470a8edbe139edf61c09307742523b59 { 'aliquot_tag': 'ALQ_51bd732b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00315.RNA-Seq.R1_L005.T C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGAAA_S17_L005_R1_001.fastq.gz 4635214588 FASTQ R1_L005 unaligned CPTAC3 0cc4eef5-1c17-47c0-b859-7f6cffcfd680 7aafb59e1b8450971813ded457fb0a13 { 'aliquot_tag': 'ALQ_51bd732b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00315.RNA-Seq.R2_L005.T C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 4819981461 FASTQ R2_L005 unaligned CPTAC3 08d6200f-2755-4eff-b345-7fa1a68d82dc 470a8edbe139edf61c09307742523b59 { 'aliquot_tag': 'ALQ_51bd732b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00315.RNA-Seq.transcriptome.T.hg38 C3N-00315 CCRCC RNA-Seq tumor CPT0012180006 ed0341d8-ee8e-4c97-aebc-acd6a8671f62.rna_seq.transcriptome.gdc_realn.bam 12420701554 BAM transcriptome harmonized CPTAC3 06d27fff-1f9e-4783-8990-677321aaae74 4d4bd84a4c21f188f66306778504440b { 'aliquot_tag': 'ALQ_51bd732b', 'gdc_sample_type': 'Primary Tumor' } C3N-00315.WGS.N C3N-00315 CCRCC WGS blood_normal CPT0012240002 CPT0012240002.WholeGenome.RP-1303.bam 62155508227 BAM aligned CPTAC3 5bc6879c-0b43-4e73-ad3e-9de9776e75aa 4985ac67e15887adca93fa4f0faec056 { 'aliquot_tag': 'ALQ_15b4289d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00315.WGS.N.hg38 C3N-00315 CCRCC WGS blood_normal CPT0012240002 b9b589dd-9f9d-4b4d-82cd-048378b3101a_gdc_realn.bam 90812352968 BAM harmonized CPTAC3 45243e54-a9f8-4db6-b6dd-20baf0df9705 ac8b00e27f89a429eb2369bb67bd4405 { 'aliquot_tag': 'ALQ_15b4289d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20099,9 +21867,9 @@ C3N-00317.DUP_766f4abc.WXS.T.hg38 C3N-00317 CCRCC WXS tumor CPT0012260012 891d01 C3N-00317.DUP_f8a6a275.miRNA-Seq.T C3N-00317 CCRCC miRNA-Seq tumor CPT0012260009 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTCAA_S37_L005_R1_001.unaln.bam 315393603 BAM unaligned CPTAC3 ebc93d18-aa19-470b-b44c-c9e001c77f20 4df83f9bc89bb2bae8439fce665bf133 { 'aliquot_tag': 'DUP_f8a6a275', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00317.DUP_f8a6a275.miRNA-Seq.T.hg38 C3N-00317 CCRCC miRNA-Seq tumor CPT0012260009 5f64e2de-2fb3-4ae7-9862-6074a82e2d22_mirnaseq_gdc_realn.bam 343273350 BAM harmonized CPTAC3 d5315c94-24a9-4540-9c67-ce4577f23e32 cf055a0177437a2aafb51798d4085f65 { 'aliquot_tag': 'DUP_f8a6a275', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00317.DUP_f8a6a275.RNA-Seq.chimeric.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 e7530ba4-3784-4bd7-92ba-4e58b397cff0.rna_seq.chimeric.gdc_realn.bam 149914560 BAM chimeric harmonized CPTAC3 ef45d407-9c51-4061-a02f-663081e62300 b8015078d5c0e4feb07e148277202e67 { 'aliquot_tag': 'DUP_f8a6a275', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00317.DUP_f8a6a275.RNA-Seq.genomic.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 e7530ba4-3784-4bd7-92ba-4e58b397cff0.rna_seq.genomic.gdc_realn.bam 9441302845 BAM genomic harmonized CPTAC3 88ccbcc7-ce75-4e63-bc0b-d0f59652087a 98cffbfbb988c20307c6f28c2000205b { 'aliquot_tag': 'DUP_f8a6a275', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00317.DUP_f8a6a275.RNA-Seq.R1_L007.T C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 200518_UNC32-K00270_0247_AHH573BBXY_CCAAGTCT-AAGGATGA_S40_L007_R1_001.fastq.gz 4446715920 FASTQ R1_L007 unaligned CPTAC3 3d8eeeba-2b19-46ac-8047-b76312922225 a18fb0500fb1f597471987bbd8cc82e8 { 'aliquot_tag': 'DUP_f8a6a275', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00317.DUP_f8a6a275.RNA-Seq.R2_L007.T C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 200518_UNC32-K00270_0247_AHH573BBXY_CCAAGTCT-AAGGATGA_S40_L007_R2_001.fastq.gz 5173788304 FASTQ R2_L007 unaligned CPTAC3 bc68e827-b6e2-4c3c-a12a-12110a8661bf 79e960dbb45e66e133c40ac23e71915c { 'aliquot_tag': 'DUP_f8a6a275', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00317.DUP_f8a6a275.RNA-Seq.genomic.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 e7530ba4-3784-4bd7-92ba-4e58b397cff0.rna_seq.genomic.gdc_realn.bam 9441302845 BAM genomic harmonized CPTAC3 baff8b63-a61c-4ec2-a825-093ce38a8290 98cffbfbb988c20307c6f28c2000205b { 'aliquot_tag': 'DUP_f8a6a275', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00317.DUP_f8a6a275.RNA-Seq.R1_L007.T C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 200518_UNC32-K00270_0247_AHH573BBXY_CCAAGTCT-AAGGATGA_S40_L007_R1_001.fastq.gz 4446715920 FASTQ R1_L007 unaligned CPTAC3 3d8eeeba-2b19-46ac-8047-b76312922225 a18fb0500fb1f597471987bbd8cc82e8 { 'aliquot_tag': 'DUP_f8a6a275', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3N-00317.DUP_f8a6a275.RNA-Seq.R2_L007.T C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 200518_UNC32-K00270_0247_AHH573BBXY_CCAAGTCT-AAGGATGA_S40_L007_R2_001.fastq.gz 5173788304 FASTQ R2_L007 unaligned CPTAC3 bc68e827-b6e2-4c3c-a12a-12110a8661bf 79e960dbb45e66e133c40ac23e71915c { 'aliquot_tag': 'DUP_f8a6a275', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3N-00317.DUP_f8a6a275.RNA-Seq.transcriptome.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012260009 e7530ba4-3784-4bd7-92ba-4e58b397cff0.rna_seq.transcriptome.gdc_realn.bam 12323354871 BAM transcriptome harmonized CPTAC3 3acb0850-c2a7-4df7-8f33-ecd5f2666f40 71d7a5a3050dcc2cba16efe842907db0 { 'aliquot_tag': 'DUP_f8a6a275', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00317.MethArray.Green.A C3N-00317 CCRCC Methylation Array tissue_normal CPT0012290009 204930640041_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 998e112c-bbf8-45a6-a254-bfc82873c9b7 60fb1dec3f6a57a1dcf645938996ebbf { 'aliquot_tag': 'ALQ_7af635a4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00317.MethArray.Green.T C3N-00317 CCRCC Methylation Array tumor CPT0012280009 202184990013_R02C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ecde6749-94d6-41bb-a9ec-76697089e5f1 d042caf608dc9e399d5114270676755b { 'aliquot_tag': 'ALQ_47961c14', 'gdc_sample_type': 'Primary Tumor' } @@ -20110,9 +21878,9 @@ C3N-00317.MethArray.Red.T C3N-00317 CCRCC Methylation Array tumor CPT0012280009 C3N-00317.miRNA-Seq.T C3N-00317 CCRCC miRNA-Seq tumor CPT0012280006 181113_UNC31-K00269_0164_AH23NNBBXY_CACCGG_S6_L003_R1_001.unaln.bam 203594470 BAM unaligned CPTAC3 f3f34b0a-61ce-439d-b46b-df17d7673979 dd6b32fa66710da023df56ff95b939e2 { 'aliquot_tag': 'ALQ_d7290185', 'gdc_sample_type': 'Primary Tumor' } C3N-00317.miRNA-Seq.T.hg38 C3N-00317 CCRCC miRNA-Seq tumor CPT0012280006 4e1883fe-7867-4204-8543-ee4e9c5378d0_mirnaseq_gdc_realn.bam 220565141 BAM harmonized CPTAC3 3a2d115a-e5d9-4aa8-b669-3920eb2e2617 9f5162dfa9b126605ca2aed7ff9ace31 { 'aliquot_tag': 'ALQ_d7290185', 'gdc_sample_type': 'Primary Tumor' } C3N-00317.RNA-Seq.chimeric.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 c1176d60-4ee4-483b-946c-9602239576b8.rna_seq.chimeric.gdc_realn.bam 61497293 BAM chimeric harmonized CPTAC3 1a182c61-f2aa-4533-8baf-c9b8bb8dbf7d 8b10431bc1d7f9bc8cdfe830fea27eac { 'aliquot_tag': 'ALQ_d7290185', 'gdc_sample_type': 'Primary Tumor' } -C3N-00317.RNA-Seq.genomic.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 c1176d60-4ee4-483b-946c-9602239576b8.rna_seq.genomic.gdc_realn.bam 7518549298 BAM genomic harmonized CPTAC3 63b50ea7-9f0b-462a-8456-872a3d9917e3 ee26d83b88fbd84ae58d7ff73c3ea0c7 { 'aliquot_tag': 'ALQ_d7290185', 'gdc_sample_type': 'Primary Tumor' } -C3N-00317.RNA-Seq.R1_L007.T C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 170823_UNC31-K00269_0076_BHLCTFBBXX_CGTACG_S6_L007_R1_001.fastq.gz 3673590014 FASTQ R1_L007 unaligned CPTAC3 2a4fb96b-e68b-402e-94dd-402cc33de691 b9c7e103998cdabfa744c89527e2aad0 { 'aliquot_tag': 'ALQ_d7290185', 'gdc_sample_type': 'Primary Tumor' } -C3N-00317.RNA-Seq.R2_L007.T C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 170823_UNC31-K00269_0076_BHLCTFBBXX_CGTACG_S6_L007_R2_001.fastq.gz 3990008813 FASTQ R2_L007 unaligned CPTAC3 21c429bb-a631-4195-be11-c6b6773ddc2d 41142e1dcac8a70c2e77b8555ed8cac4 { 'aliquot_tag': 'ALQ_d7290185', 'gdc_sample_type': 'Primary Tumor' } +C3N-00317.RNA-Seq.genomic.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 c1176d60-4ee4-483b-946c-9602239576b8.rna_seq.genomic.gdc_realn.bam 7518549298 BAM genomic harmonized CPTAC3 92f02ad9-402a-4210-944e-777004cf4a99 ee26d83b88fbd84ae58d7ff73c3ea0c7 { 'aliquot_tag': 'ALQ_d7290185', 'gdc_sample_type': 'Primary Tumor' } +C3N-00317.RNA-Seq.R1_L007.T C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 170823_UNC31-K00269_0076_BHLCTFBBXX_CGTACG_S6_L007_R1_001.fastq.gz 3673590014 FASTQ R1_L007 unaligned CPTAC3 2a4fb96b-e68b-402e-94dd-402cc33de691 b9c7e103998cdabfa744c89527e2aad0 { 'aliquot_tag': 'ALQ_d7290185', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00317.RNA-Seq.R2_L007.T C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 170823_UNC31-K00269_0076_BHLCTFBBXX_CGTACG_S6_L007_R2_001.fastq.gz 3990008813 FASTQ R2_L007 unaligned CPTAC3 21c429bb-a631-4195-be11-c6b6773ddc2d 41142e1dcac8a70c2e77b8555ed8cac4 { 'aliquot_tag': 'ALQ_d7290185', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00317.RNA-Seq.transcriptome.T.hg38 C3N-00317 CCRCC RNA-Seq tumor CPT0012280006 c1176d60-4ee4-483b-946c-9602239576b8.rna_seq.transcriptome.gdc_realn.bam 10602153212 BAM transcriptome harmonized CPTAC3 88c84b03-e5eb-4341-892c-7c6dea9d0f52 b6c47800d43467e34aaebd8f081c7dcb { 'aliquot_tag': 'ALQ_d7290185', 'gdc_sample_type': 'Primary Tumor' } C3N-00317.WGS.A C3N-00317 CCRCC WGS tissue_normal CPT0012290009 CPT0012290009.WholeGenome.RP-1303.bam 62528489541 BAM aligned CPTAC3 41602fac-e7dc-4df4-b74b-b88fc94b03d3 8e43c896166c11d0d981afa15e618384 { 'aliquot_tag': 'ALQ_7af635a4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00317.WGS.A.hg38 C3N-00317 CCRCC WGS tissue_normal CPT0012290009 67b95338-b369-4e42-9b0f-ac7d5cae97fc_wgs_gdc_realn.bam 90789444765 BAM harmonized CPTAC3 bcfe5567-6e70-47d0-ad80-e54cf37771a9 e63fda0e1ca5d82477c8d1d360087a5f { 'aliquot_tag': 'ALQ_7af635a4', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20129,16 +21897,16 @@ C3N-00317.WXS.T.hg38 C3N-00317 CCRCC WXS tumor CPT0012280009 0984ed95-1b7c-4757- C3N-00320.DUP_1c75d220.miRNA-Seq.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012380006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGTCA_S22_L002_R1_001.unaln.bam 284601693 BAM unaligned CPTAC3 2f18d805-7d6d-42af-8070-e90c8168c479 d5cf651bc2eb3d9c5a7332ced02cfed0 { 'aliquot_tag': 'DUP_1c75d220', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_1c75d220.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012380006 8cdc2aca-acce-4d10-bbc1-a447325909a0_mirnaseq_gdc_realn.bam 319705369 BAM harmonized CPTAC3 c071e737-84f9-4ebf-bf67-72c1e8d680e8 fc595300a3bcd8a9114285e416c3547a { 'aliquot_tag': 'DUP_1c75d220', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_1c75d220.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 6fa6b2d5-33bd-4bfb-8f45-3969b64c36ee.rna_seq.chimeric.gdc_realn.bam 82564128 BAM chimeric harmonized CPTAC3 e06d8fab-06cf-4ab1-b31d-ad22420dbe8f 74fae14cce7c3a4f535b8c89bceed7a1 { 'aliquot_tag': 'DUP_1c75d220', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00320.DUP_1c75d220.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 6fa6b2d5-33bd-4bfb-8f45-3969b64c36ee.rna_seq.genomic.gdc_realn.bam 7724049130 BAM genomic harmonized CPTAC3 c17f153b-2c73-42ff-98b0-1140321b1328 14a0402b322d645e00e6da469d47e785 { 'aliquot_tag': 'DUP_1c75d220', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00320.DUP_1c75d220.RNA-Seq.R1_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 200519_UNC31-K00269_0280_BHHKGNBBXY_TTGCCTAG-ACCACTTA_S12_L003_R1_001.fastq.gz 3679918907 FASTQ R1_L003 unaligned CPTAC3 66919a0f-2958-4676-b23f-60171879bb9a 25d9290804dcfc8209d969f391c3d6fb { 'aliquot_tag': 'DUP_1c75d220', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00320.DUP_1c75d220.RNA-Seq.R2_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 200519_UNC31-K00269_0280_BHHKGNBBXY_TTGCCTAG-ACCACTTA_S12_L003_R2_001.fastq.gz 4334583810 FASTQ R2_L003 unaligned CPTAC3 20ec54c5-b82b-4421-b92b-cb45fda6e36b 46daa572b295ea84a335151c44b99f3c { 'aliquot_tag': 'DUP_1c75d220', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00320.DUP_1c75d220.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 6fa6b2d5-33bd-4bfb-8f45-3969b64c36ee.rna_seq.genomic.gdc_realn.bam 7724049130 BAM genomic harmonized CPTAC3 27d5cedd-9486-4452-a62e-859e42735875 14a0402b322d645e00e6da469d47e785 { 'aliquot_tag': 'DUP_1c75d220', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00320.DUP_1c75d220.RNA-Seq.R1_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 200519_UNC31-K00269_0280_BHHKGNBBXY_TTGCCTAG-ACCACTTA_S12_L003_R1_001.fastq.gz 3679918907 FASTQ R1_L003 unaligned CPTAC3 66919a0f-2958-4676-b23f-60171879bb9a 25d9290804dcfc8209d969f391c3d6fb { 'aliquot_tag': 'DUP_1c75d220', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L003' } +C3N-00320.DUP_1c75d220.RNA-Seq.R2_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 200519_UNC31-K00269_0280_BHHKGNBBXY_TTGCCTAG-ACCACTTA_S12_L003_R2_001.fastq.gz 4334583810 FASTQ R2_L003 unaligned CPTAC3 20ec54c5-b82b-4421-b92b-cb45fda6e36b 46daa572b295ea84a335151c44b99f3c { 'aliquot_tag': 'DUP_1c75d220', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L003' } C3N-00320.DUP_1c75d220.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012380006 6fa6b2d5-33bd-4bfb-8f45-3969b64c36ee.rna_seq.transcriptome.gdc_realn.bam 10591450782 BAM transcriptome harmonized CPTAC3 d64cbd5f-e9e0-4598-adf6-fdbce376cfa3 639a26ea4882b5092c2a9dc6b2c5e828 { 'aliquot_tag': 'DUP_1c75d220', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_2115fb90.miRNA-Seq.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012390006 200526_UNC32-K00270_0248_BHH7WFBBXY_CCGTCC_S28_L002_R1_001.unaln.bam 225705483 BAM unaligned CPTAC3 629eec19-2b96-4d77-a82a-6d11c994777c 17bd70557a727173f919d27af718aba6 { 'aliquot_tag': 'DUP_2115fb90', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_2115fb90.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012390006 7c5ac62e-3b63-46b8-bc92-5c9b3518cf71_mirnaseq_gdc_realn.bam 252781474 BAM harmonized CPTAC3 ef556d14-e961-41bd-a2b1-6fd929161639 0a11b054e67572eab835c72210577fa7 { 'aliquot_tag': 'DUP_2115fb90', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_2115fb90.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 d70abc66-1ad3-40d8-bfd2-093fd21f350b.rna_seq.chimeric.gdc_realn.bam 70539508 BAM chimeric harmonized CPTAC3 42632c2a-6525-40de-ad10-67ed3f81e4db 1512798dcd759f8a9ff3d2f2ac0bb36a { 'aliquot_tag': 'DUP_2115fb90', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_2115fb90.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 d70abc66-1ad3-40d8-bfd2-093fd21f350b.rna_seq.genomic.gdc_realn.bam 9648926143 BAM genomic harmonized CPTAC3 23b8e1e6-7892-472b-a165-38af8b87a474 a68fefcb92f9ce3891aff6cf61582cde { 'aliquot_tag': 'DUP_2115fb90', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00320.DUP_2115fb90.RNA-Seq.R1_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 200519_UNC31-K00269_0280_BHHKGNBBXY_CCATTCGA-GTTGTCCG_S9_L003_R1_001.fastq.gz 4571285022 FASTQ R1_L003 unaligned CPTAC3 f69ff481-fb60-4571-ae1e-5532b83b10be 8ff84f7dfcbdef934d9d8faf92349287 { 'aliquot_tag': 'DUP_2115fb90', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00320.DUP_2115fb90.RNA-Seq.R2_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 200519_UNC31-K00269_0280_BHHKGNBBXY_CCATTCGA-GTTGTCCG_S9_L003_R2_001.fastq.gz 5356526609 FASTQ R2_L003 unaligned CPTAC3 55661e0f-51e4-4c2d-a719-28620deeb87b fb8c05341b28ff91c6e545438458b5fa { 'aliquot_tag': 'DUP_2115fb90', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00320.DUP_2115fb90.RNA-Seq.R1_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 200519_UNC31-K00269_0280_BHHKGNBBXY_CCATTCGA-GTTGTCCG_S9_L003_R1_001.fastq.gz 4571285022 FASTQ R1_L003 unaligned CPTAC3 f69ff481-fb60-4571-ae1e-5532b83b10be 8ff84f7dfcbdef934d9d8faf92349287 { 'aliquot_tag': 'DUP_2115fb90', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L003' } +C3N-00320.DUP_2115fb90.RNA-Seq.R2_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 200519_UNC31-K00269_0280_BHHKGNBBXY_CCATTCGA-GTTGTCCG_S9_L003_R2_001.fastq.gz 5356526609 FASTQ R2_L003 unaligned CPTAC3 55661e0f-51e4-4c2d-a719-28620deeb87b fb8c05341b28ff91c6e545438458b5fa { 'aliquot_tag': 'DUP_2115fb90', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L003' } C3N-00320.DUP_2115fb90.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012390006 d70abc66-1ad3-40d8-bfd2-093fd21f350b.rna_seq.transcriptome.gdc_realn.bam 13265768933 BAM transcriptome harmonized CPTAC3 071a5c68-95f7-4149-96eb-5d41237b3b9a 9561ea692dad1927d483ad32d766a62c { 'aliquot_tag': 'DUP_2115fb90', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_33fa71d0.MethArray.Green.T C3N-00320 CCRCC Methylation Array tumor CPT0012360009 204367400148_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 ad8ae0db-4798-4334-9196-bc864a27edac 186f8088fbd343a67a4f1299b7dbfd61 { 'aliquot_tag': 'DUP_33fa71d0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_33fa71d0.MethArray.Red.T C3N-00320 CCRCC Methylation Array tumor CPT0012360009 204367400148_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 a5138284-3fff-40a5-894b-1e2e5a3e6a8f 7fb0c2badbc56e734a70e2b4cf7874fa { 'aliquot_tag': 'DUP_33fa71d0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -20155,9 +21923,9 @@ C3N-00320.DUP_8ccacfb1.WXS.T.hg38 C3N-00320 CCRCC WXS tumor CPT0012380009 1632a6 C3N-00320.DUP_a3456c41.miRNA-Seq.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012360006 200526_UNC32-K00270_0248_BHH7WFBBXY_AGTTCC_S38_L003_R1_001.unaln.bam 339476070 BAM unaligned CPTAC3 7491cd65-34fb-434e-a4ac-b54621b96a81 cc6b51c7d8dda3275fb4e02696becec4 { 'aliquot_tag': 'DUP_a3456c41', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_a3456c41.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012360006 76505d6b-d1d5-416e-8d71-9d49c1540aaf_mirnaseq_gdc_realn.bam 372884577 BAM harmonized CPTAC3 fce3a91f-fadb-4ef9-8ab9-2d05cc75ea5d cabc65c48c68aa54b3feaa3e7fffed3f { 'aliquot_tag': 'DUP_a3456c41', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_a3456c41.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 8423c9cc-c076-4292-be08-f8b146f07739.rna_seq.chimeric.gdc_realn.bam 79148040 BAM chimeric harmonized CPTAC3 6e0066d9-677e-4d27-a01d-38e384092801 fc620d6f6d73d1d103e03a63dce04561 { 'aliquot_tag': 'DUP_a3456c41', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00320.DUP_a3456c41.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 8423c9cc-c076-4292-be08-f8b146f07739.rna_seq.genomic.gdc_realn.bam 8289038625 BAM genomic harmonized CPTAC3 5c6420d4-1152-42da-a7b9-367332c0c52d 99a6865513c498c4cdb700cae417e6a1 { 'aliquot_tag': 'DUP_a3456c41', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00320.DUP_a3456c41.RNA-Seq.R1_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 200519_UNC31-K00269_0280_BHHKGNBBXY_TAAGGTCA-TGTCGTAG_S11_L003_R1_001.fastq.gz 3880063080 FASTQ R1_L003 unaligned CPTAC3 cb1d2aee-af7c-40af-8301-4db2b1421d49 4444d3ed8a7a18d5760be054d18b15df { 'aliquot_tag': 'DUP_a3456c41', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00320.DUP_a3456c41.RNA-Seq.R2_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 200519_UNC31-K00269_0280_BHHKGNBBXY_TAAGGTCA-TGTCGTAG_S11_L003_R2_001.fastq.gz 4474796601 FASTQ R2_L003 unaligned CPTAC3 6085220d-0b7d-4c0c-b6a5-11ca560676b8 9acec1826e88a79966d7ae40464fc357 { 'aliquot_tag': 'DUP_a3456c41', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00320.DUP_a3456c41.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 8423c9cc-c076-4292-be08-f8b146f07739.rna_seq.genomic.gdc_realn.bam 8289038625 BAM genomic harmonized CPTAC3 28f73e5d-7b4c-4ca9-aab7-49f32897fed8 99a6865513c498c4cdb700cae417e6a1 { 'aliquot_tag': 'DUP_a3456c41', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00320.DUP_a3456c41.RNA-Seq.R1_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 200519_UNC31-K00269_0280_BHHKGNBBXY_TAAGGTCA-TGTCGTAG_S11_L003_R1_001.fastq.gz 3880063080 FASTQ R1_L003 unaligned CPTAC3 cb1d2aee-af7c-40af-8301-4db2b1421d49 4444d3ed8a7a18d5760be054d18b15df { 'aliquot_tag': 'DUP_a3456c41', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L003' } +C3N-00320.DUP_a3456c41.RNA-Seq.R2_L003.T C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 200519_UNC31-K00269_0280_BHHKGNBBXY_TAAGGTCA-TGTCGTAG_S11_L003_R2_001.fastq.gz 4474796601 FASTQ R2_L003 unaligned CPTAC3 6085220d-0b7d-4c0c-b6a5-11ca560676b8 9acec1826e88a79966d7ae40464fc357 { 'aliquot_tag': 'DUP_a3456c41', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L003' } C3N-00320.DUP_a3456c41.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012360006 8423c9cc-c076-4292-be08-f8b146f07739.rna_seq.transcriptome.gdc_realn.bam 11278861374 BAM transcriptome harmonized CPTAC3 6194822b-e965-438c-94c2-8ad14df89e14 0fec3c2767b12a3f3f1a8a4a58b54c4a { 'aliquot_tag': 'DUP_a3456c41', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_b1aae601.MethArray.Green.T C3N-00320 CCRCC Methylation Array tumor CPT0012390009 204372030164_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6180d0ff-1a06-4684-83df-4a1fd88d96cc c6966dc091bab96de3d362fbb48006b0 { 'aliquot_tag': 'DUP_b1aae601', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00320.DUP_b1aae601.MethArray.Red.T C3N-00320 CCRCC Methylation Array tumor CPT0012390009 204372030164_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 671aee2b-188e-4d75-92f7-e1bf7ecf9dbd 086f2857e3fd1b70f8ed65e2f81d2c59 { 'aliquot_tag': 'DUP_b1aae601', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -20172,9 +21940,9 @@ C3N-00320.MethArray.Red.T C3N-00320 CCRCC Methylation Array tumor CPT0012370009 C3N-00320.miRNA-Seq.T C3N-00320 CCRCC miRNA-Seq tumor CPT0012370006 181113_UNC31-K00269_0164_AH23NNBBXY_ATGAGC_S2_L003_R1_001.unaln.bam 281152360 BAM unaligned CPTAC3 c33e1bc4-a082-4ddc-89f2-6984f05783db 014f7673247b91a967922a4ea3ff2bde { 'aliquot_tag': 'ALQ_9e2545f1', 'gdc_sample_type': 'Primary Tumor' } C3N-00320.miRNA-Seq.T.hg38 C3N-00320 CCRCC miRNA-Seq tumor CPT0012370006 8738c4d1-d405-475f-9a02-630f7ec9a26d_mirnaseq_gdc_realn.bam 311668242 BAM harmonized CPTAC3 f26f80f0-d544-402c-b9e9-2f6a0b709b61 e1864c178114bb0fdb57d474eedc9115 { 'aliquot_tag': 'ALQ_9e2545f1', 'gdc_sample_type': 'Primary Tumor' } C3N-00320.RNA-Seq.chimeric.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 0795ba2b-e6cf-43d4-80e8-56a21fc61ec5.rna_seq.chimeric.gdc_realn.bam 48290566 BAM chimeric harmonized CPTAC3 8ce6be0d-1192-4901-8072-64d69946c406 991c77ec9e545d6ed4835247a48baf79 { 'aliquot_tag': 'ALQ_9e2545f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00320.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 0795ba2b-e6cf-43d4-80e8-56a21fc61ec5.rna_seq.genomic.gdc_realn.bam 6274112352 BAM genomic harmonized CPTAC3 235196a1-b77a-4fbb-8f21-2f1ed8af7acf d5f203484f6c8fdbce518b1d3b2a1877 { 'aliquot_tag': 'ALQ_9e2545f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00320.RNA-Seq.R1_L008.T C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S9_L008_R1_001.fastq.gz 3091322265 FASTQ R1_L008 unaligned CPTAC3 37b120ef-3755-4e45-8be1-507d5c35c3e4 441e8f610fb2c14b1a3ebe8a6d464f09 { 'aliquot_tag': 'ALQ_9e2545f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00320.RNA-Seq.R2_L008.T C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S9_L008_R2_001.fastq.gz 3392071071 FASTQ R2_L008 unaligned CPTAC3 94898532-9a80-4e95-872f-0947b84f97ba 0f7ec41918a06aa947f05ea005cc8123 { 'aliquot_tag': 'ALQ_9e2545f1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00320.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 0795ba2b-e6cf-43d4-80e8-56a21fc61ec5.rna_seq.genomic.gdc_realn.bam 6274112352 BAM genomic harmonized CPTAC3 87e63566-1572-4d42-850f-6755e00ab3ca d5f203484f6c8fdbce518b1d3b2a1877 { 'aliquot_tag': 'ALQ_9e2545f1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00320.RNA-Seq.R1_L008.T C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S9_L008_R1_001.fastq.gz 3091322265 FASTQ R1_L008 unaligned CPTAC3 37b120ef-3755-4e45-8be1-507d5c35c3e4 441e8f610fb2c14b1a3ebe8a6d464f09 { 'aliquot_tag': 'ALQ_9e2545f1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00320.RNA-Seq.R2_L008.T C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S9_L008_R2_001.fastq.gz 3392071071 FASTQ R2_L008 unaligned CPTAC3 94898532-9a80-4e95-872f-0947b84f97ba 0f7ec41918a06aa947f05ea005cc8123 { 'aliquot_tag': 'ALQ_9e2545f1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00320.RNA-Seq.transcriptome.T.hg38 C3N-00320 CCRCC RNA-Seq tumor CPT0012370006 0795ba2b-e6cf-43d4-80e8-56a21fc61ec5.rna_seq.transcriptome.gdc_realn.bam 8517514902 BAM transcriptome harmonized CPTAC3 d1574f55-fdbc-4207-9761-60c742767558 f7544a262ab331976365365782605910 { 'aliquot_tag': 'ALQ_9e2545f1', 'gdc_sample_type': 'Primary Tumor' } C3N-00320.WGS.A C3N-00320 CCRCC WGS tissue_normal CPT0013790009 CPT0013790009.WholeGenome.RP-1303.bam 55439275683 BAM aligned CPTAC3 2f1589a0-c19e-4097-941f-57173cc7edb2 1af30ca89e8c05f0800c1c5aab29f558 { 'aliquot_tag': 'ALQ_8c4cafa3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00320.WGS.A.hg38 C3N-00320 CCRCC WGS tissue_normal CPT0013790009 4f532e9c-941f-4b49-8dbd-91d63703c946_wgs_gdc_realn.bam 80906710944 BAM harmonized CPTAC3 be927f6b-41da-4bdc-bc7a-2108446f4ce0 723257b5b5dde86adc5b05770ea2e71f { 'aliquot_tag': 'ALQ_8c4cafa3', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20193,9 +21961,9 @@ C3N-00321.MethArray.Red.T C3N-00321 UCEC Methylation Array tumor CPT0010260006 2 C3N-00321.miRNA-Seq.T C3N-00321 UCEC miRNA-Seq tumor CPT0010260013 181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L003_R1_001.unaln.bam 213546998 BAM unaligned CPTAC3 ae0651ba-7465-49e3-9b34-66b86bf9c7d9 6211ee2d8fa282d5e2edc144231e34ff { 'aliquot_tag': 'ALQ_96f76b03', 'gdc_sample_type': 'Primary Tumor' } C3N-00321.miRNA-Seq.T.hg38 C3N-00321 UCEC miRNA-Seq tumor CPT0010260013 34f015e0-5eff-494f-a06f-d65b69c6d3f0_mirnaseq_gdc_realn.bam 235902997 BAM harmonized CPTAC3 364cc440-ea91-43fd-968f-92b2b2586850 56dc7d6dffcea13d0d799b8a246d0e3b { 'aliquot_tag': 'ALQ_96f76b03', 'gdc_sample_type': 'Primary Tumor' } C3N-00321.RNA-Seq.chimeric.T.hg38 C3N-00321 UCEC RNA-Seq tumor CPT0010260013 25af8e3e-ac27-4f53-a63b-406c49608962.rna_seq.chimeric.gdc_realn.bam 81084810 BAM chimeric harmonized CPTAC3 2c0ba0dc-39b3-432f-b1d2-9813c5859403 873abf511d8fb5d6b2fa32f26ad75c74 { 'aliquot_tag': 'ALQ_96f76b03', 'gdc_sample_type': 'Primary Tumor' } -C3N-00321.RNA-Seq.genomic.T.hg38 C3N-00321 UCEC RNA-Seq tumor CPT0010260013 25af8e3e-ac27-4f53-a63b-406c49608962.rna_seq.genomic.gdc_realn.bam 7081895409 BAM genomic harmonized CPTAC3 1ab5d4c9-c682-46b8-a757-be81cf1d481e 09273adfdc2682ba4fafa7287cbc1728 { 'aliquot_tag': 'ALQ_96f76b03', 'gdc_sample_type': 'Primary Tumor' } -C3N-00321.RNA-Seq.R1_L007.T C3N-00321 UCEC RNA-Seq tumor CPT0010260013 170802_UNC31-K00269_0072_AHK3GVBBXX_ATCACG_S21_L007_R1_001.fastq.gz 3752068132 FASTQ R1_L007 unaligned CPTAC3 0de8cfbb-adb2-4d1d-91f6-685a03b16449 2e1f8547023d02e89e0d4a4ced588871 { 'aliquot_tag': 'ALQ_96f76b03', 'gdc_sample_type': 'Primary Tumor' } -C3N-00321.RNA-Seq.R2_L007.T C3N-00321 UCEC RNA-Seq tumor CPT0010260013 170802_UNC31-K00269_0072_AHK3GVBBXX_ATCACG_S21_L007_R2_001.fastq.gz 3994694692 FASTQ R2_L007 unaligned CPTAC3 cc11b6d3-897f-4158-96a4-91b5ebbbb74e 5281010273ad198c901258b823d2440b { 'aliquot_tag': 'ALQ_96f76b03', 'gdc_sample_type': 'Primary Tumor' } +C3N-00321.RNA-Seq.genomic.T.hg38 C3N-00321 UCEC RNA-Seq tumor CPT0010260013 25af8e3e-ac27-4f53-a63b-406c49608962.rna_seq.genomic.gdc_realn.bam 7081895409 BAM genomic harmonized CPTAC3 bb525823-44bc-4565-9130-e00534d486ac 09273adfdc2682ba4fafa7287cbc1728 { 'aliquot_tag': 'ALQ_96f76b03', 'gdc_sample_type': 'Primary Tumor' } +C3N-00321.RNA-Seq.R1_L007.T C3N-00321 UCEC RNA-Seq tumor CPT0010260013 170802_UNC31-K00269_0072_AHK3GVBBXX_ATCACG_S21_L007_R1_001.fastq.gz 3752068132 FASTQ R1_L007 unaligned CPTAC3 0de8cfbb-adb2-4d1d-91f6-685a03b16449 2e1f8547023d02e89e0d4a4ced588871 { 'aliquot_tag': 'ALQ_96f76b03', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00321.RNA-Seq.R2_L007.T C3N-00321 UCEC RNA-Seq tumor CPT0010260013 170802_UNC31-K00269_0072_AHK3GVBBXX_ATCACG_S21_L007_R2_001.fastq.gz 3994694692 FASTQ R2_L007 unaligned CPTAC3 cc11b6d3-897f-4158-96a4-91b5ebbbb74e 5281010273ad198c901258b823d2440b { 'aliquot_tag': 'ALQ_96f76b03', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00321.RNA-Seq.transcriptome.T.hg38 C3N-00321 UCEC RNA-Seq tumor CPT0010260013 25af8e3e-ac27-4f53-a63b-406c49608962.rna_seq.transcriptome.gdc_realn.bam 9431039066 BAM transcriptome harmonized CPTAC3 ebaa25b8-971e-4503-8149-f91ffd0a2f58 8153294d2c7221ad13d3409454d8ff7a { 'aliquot_tag': 'ALQ_96f76b03', 'gdc_sample_type': 'Primary Tumor' } C3N-00321.WGS.N C3N-00321 UCEC WGS blood_normal CPT0010380002 CPT0010380002.WholeGenome.RP-1303.bam 69369614862 BAM aligned CPTAC3 cafbc744-d17d-40db-8263-791f2ae1cb1c b76b87b8720b22f82b9fac58b06f5207 { 'aliquot_tag': 'ALQ_8c870710', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00321.WGS.N.hg38 C3N-00321 UCEC WGS blood_normal CPT0010380002 5af7cd9f-e8dd-49af-ac6a-6badeed9fd8d_gdc_realn.bam 101250756816 BAM harmonized CPTAC3 3a2749ed-da5e-477a-9cd4-900035dc627b 396cbd83617d92f81f787b36c3749eb2 { 'aliquot_tag': 'ALQ_8c870710', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20210,9 +21978,9 @@ C3N-00322.MethArray.Red.T C3N-00322 UCEC Methylation Array tumor CPT0010430006 2 C3N-00322.miRNA-Seq.T C3N-00322 UCEC miRNA-Seq tumor CPT0010430009 181012_UNC32-K00270_0124_AH223CBBXY_GTTTCG_S41_L002_R1_001.unaln.bam 199951163 BAM unaligned CPTAC3 247ce094-2ff3-4fd4-affe-e065a316496c 0dc29e9c8ba5ab7e58a8d63afa528641 { 'aliquot_tag': 'ALQ_7180df31', 'gdc_sample_type': 'Primary Tumor' } C3N-00322.miRNA-Seq.T.hg38 C3N-00322 UCEC miRNA-Seq tumor CPT0010430009 74e8e745-6ea8-45ba-8a17-f5399b2d947d_mirnaseq_gdc_realn.bam 221374565 BAM harmonized CPTAC3 3ce10d87-ef9f-4402-8f23-0ab09905d18d bee6f337447858d5fa44f167fae3e8d9 { 'aliquot_tag': 'ALQ_7180df31', 'gdc_sample_type': 'Primary Tumor' } C3N-00322.RNA-Seq.chimeric.T.hg38 C3N-00322 UCEC RNA-Seq tumor CPT0010430009 e3cb85ab-59d7-454d-99e8-572eba19a58a.rna_seq.chimeric.gdc_realn.bam 142707640 BAM chimeric harmonized CPTAC3 4afb5b96-8f23-4c81-9343-c5b00a5d0846 2ef9aeb0cf55448a81682734453e3bd9 { 'aliquot_tag': 'ALQ_7180df31', 'gdc_sample_type': 'Primary Tumor' } -C3N-00322.RNA-Seq.genomic.T.hg38 C3N-00322 UCEC RNA-Seq tumor CPT0010430009 e3cb85ab-59d7-454d-99e8-572eba19a58a.rna_seq.genomic.gdc_realn.bam 7374070456 BAM genomic harmonized CPTAC3 c8bf341d-0491-4d77-9db7-8dbb6183d030 f0e0709d76588abf4d82e4f298261004 { 'aliquot_tag': 'ALQ_7180df31', 'gdc_sample_type': 'Primary Tumor' } -C3N-00322.RNA-Seq.R1_L008.T C3N-00322 UCEC RNA-Seq tumor CPT0010430009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L008_R1_001.fastq.gz 3553567243 FASTQ R1_L008 unaligned CPTAC3 86f3b033-6491-4d96-bf41-f51ddfc6bb5b a08b316f957ec9853af165b83dbd0e08 { 'aliquot_tag': 'ALQ_7180df31', 'gdc_sample_type': 'Primary Tumor' } -C3N-00322.RNA-Seq.R2_L008.T C3N-00322 UCEC RNA-Seq tumor CPT0010430009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L008_R2_001.fastq.gz 3675749783 FASTQ R2_L008 unaligned CPTAC3 258cde18-4abd-4a5f-8140-23f1da45abdc 1f1520cd6cabb80f74632a01a2dd25ae { 'aliquot_tag': 'ALQ_7180df31', 'gdc_sample_type': 'Primary Tumor' } +C3N-00322.RNA-Seq.genomic.T.hg38 C3N-00322 UCEC RNA-Seq tumor CPT0010430009 e3cb85ab-59d7-454d-99e8-572eba19a58a.rna_seq.genomic.gdc_realn.bam 7374070456 BAM genomic harmonized CPTAC3 b048ddd7-1f6b-477d-8bac-fe8ad7ac9529 f0e0709d76588abf4d82e4f298261004 { 'aliquot_tag': 'ALQ_7180df31', 'gdc_sample_type': 'Primary Tumor' } +C3N-00322.RNA-Seq.R1_L008.T C3N-00322 UCEC RNA-Seq tumor CPT0010430009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L008_R1_001.fastq.gz 3553567243 FASTQ R1_L008 unaligned CPTAC3 86f3b033-6491-4d96-bf41-f51ddfc6bb5b a08b316f957ec9853af165b83dbd0e08 { 'aliquot_tag': 'ALQ_7180df31', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00322.RNA-Seq.R2_L008.T C3N-00322 UCEC RNA-Seq tumor CPT0010430009 170818_UNC32-K00270_0050_AHL2FHBBXX_ATCACG_S5_L008_R2_001.fastq.gz 3675749783 FASTQ R2_L008 unaligned CPTAC3 258cde18-4abd-4a5f-8140-23f1da45abdc 1f1520cd6cabb80f74632a01a2dd25ae { 'aliquot_tag': 'ALQ_7180df31', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00322.RNA-Seq.transcriptome.T.hg38 C3N-00322 UCEC RNA-Seq tumor CPT0010430009 e3cb85ab-59d7-454d-99e8-572eba19a58a.rna_seq.transcriptome.gdc_realn.bam 11777070503 BAM transcriptome harmonized CPTAC3 56d29159-71f1-4408-9318-29ea5417f7fe 4df0324547cbad18df0533eb1f0bfd48 { 'aliquot_tag': 'ALQ_7180df31', 'gdc_sample_type': 'Primary Tumor' } C3N-00322.WGS.N C3N-00322 UCEC WGS blood_normal CPT0077050001 CPT0077050001.WholeGenome.RP-1303.bam 64984269673 BAM aligned CPTAC3 3a8668fe-116d-4cf6-acc2-e7fc6231ac2c 1f7346e399431993bcbba3ab00286bdf { 'aliquot_tag': 'ALQ_6842d7bc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00322.WGS.N.hg38 C3N-00322 UCEC WGS blood_normal CPT0077050001 57e730bf-2e32-4cf2-907b-f191778b6783_gdc_realn.bam 98300820182 BAM harmonized CPTAC3 c44027d8-b828-4d83-b821-f9c8b1dcd844 a36ee4ec1946045463ab1029d5830d87 { 'aliquot_tag': 'ALQ_6842d7bc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20228,8 +21996,8 @@ C3N-00323.miRNA-Seq.T C3N-00323 UCEC miRNA-Seq tumor CPT0010610009 181012_UNC32- C3N-00323.miRNA-Seq.T.hg38 C3N-00323 UCEC miRNA-Seq tumor CPT0010610009 efa0be95-7c16-4a53-9da7-03ec3c0f5aab_mirnaseq_gdc_realn.bam 241137160 BAM harmonized CPTAC3 a3cb5e24-d661-4455-a4dc-c5d1209b2c24 fa908c0c658a02b31425dad8e4c6b3df { 'aliquot_tag': 'ALQ_46882d5a', 'gdc_sample_type': 'Primary Tumor' } C3N-00323.RNA-Seq.chimeric.T.hg38 C3N-00323 UCEC RNA-Seq tumor CPT0010610009 1f4f9117-a498-4e4e-a566-ab3b93983521.rna_seq.chimeric.gdc_realn.bam 257455491 BAM chimeric harmonized CPTAC3 e0b40769-3617-40d0-958f-db8fcd2f3959 91c1905b2dcea37a38c47e031422b81a { 'aliquot_tag': 'ALQ_46882d5a', 'gdc_sample_type': 'Primary Tumor' } C3N-00323.RNA-Seq.genomic.T.hg38 C3N-00323 UCEC RNA-Seq tumor CPT0010610009 1f4f9117-a498-4e4e-a566-ab3b93983521.rna_seq.genomic.gdc_realn.bam 9383791902 BAM genomic harmonized CPTAC3 4b04fc45-9a46-4c1a-b9c2-b2444bce8c1a dd7c4a8296f9ae5c7c034540cfaf87b2 { 'aliquot_tag': 'ALQ_46882d5a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00323.RNA-Seq.R1_L008.T C3N-00323 UCEC RNA-Seq tumor CPT0010610009 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4395483954 FASTQ R1_L008 unaligned CPTAC3 6c14578c-92ff-4085-a8d8-d5122ff4fd11 6d0b2ee628cef309c705371ee9041e38 { 'aliquot_tag': 'ALQ_46882d5a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00323.RNA-Seq.R2_L008.T C3N-00323 UCEC RNA-Seq tumor CPT0010610009 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4750813976 FASTQ R2_L008 unaligned CPTAC3 727a9891-1116-4c77-9787-a08111f0b3e8 2dbab226164b1ad4aaaa77fc12bc6429 { 'aliquot_tag': 'ALQ_46882d5a', 'gdc_sample_type': 'Primary Tumor' } +C3N-00323.RNA-Seq.R1_L008.T C3N-00323 UCEC RNA-Seq tumor CPT0010610009 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L008_R1_001.fastq.gz 4395483954 FASTQ R1_L008 unaligned CPTAC3 6c14578c-92ff-4085-a8d8-d5122ff4fd11 6d0b2ee628cef309c705371ee9041e38 { 'aliquot_tag': 'ALQ_46882d5a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00323.RNA-Seq.R2_L008.T C3N-00323 UCEC RNA-Seq tumor CPT0010610009 170818_UNC32-K00270_0050_AHL2FHBBXX_CGATGT_S6_L008_R2_001.fastq.gz 4750813976 FASTQ R2_L008 unaligned CPTAC3 727a9891-1116-4c77-9787-a08111f0b3e8 2dbab226164b1ad4aaaa77fc12bc6429 { 'aliquot_tag': 'ALQ_46882d5a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00323.RNA-Seq.transcriptome.T.hg38 C3N-00323 UCEC RNA-Seq tumor CPT0010610009 1f4f9117-a498-4e4e-a566-ab3b93983521.rna_seq.transcriptome.gdc_realn.bam 8924037157 BAM transcriptome harmonized CPTAC3 41dc37e8-4c83-4e30-9331-86fb37e64bf4 7019615309ffd912f0282552e8e88f89 { 'aliquot_tag': 'ALQ_46882d5a', 'gdc_sample_type': 'Primary Tumor' } C3N-00323.WGS.N C3N-00323 UCEC WGS blood_normal CPT0010760002 CPT0010760002.WholeGenome.RP-1303.bam 66268160978 BAM aligned CPTAC3 cd876b39-d4dd-4757-81c2-b8156a27d5e7 c91b44882fd7e686c0762a1791c96a2a { 'aliquot_tag': 'ALQ_a826fb67', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00323.WGS.N.hg38 C3N-00323 UCEC WGS blood_normal CPT0010760002 577c96fe-53aa-4c2d-9410-263e818b88d0_gdc_realn.bam 94883553811 BAM harmonized CPTAC3 f14df642-0372-4fce-98ae-e94369a425cd 601128f38961d30abbcd604fd9d684ca { 'aliquot_tag': 'ALQ_a826fb67', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20244,9 +22012,9 @@ C3N-00324.MethArray.Red.T C3N-00324 UCEC Methylation Array tumor CPT0010820006 2 C3N-00324.miRNA-Seq.T C3N-00324 UCEC miRNA-Seq tumor CPT0010820009 181012_UNC32-K00270_0124_AH223CBBXY_GAGTGG_S43_L003_R1_001.unaln.bam 202782331 BAM unaligned CPTAC3 9f755b11-1790-40b8-80be-4a74edf2e3a2 f8399cfe084dbdc5b25854c98467839c { 'aliquot_tag': 'ALQ_3b2236fa', 'gdc_sample_type': 'Primary Tumor' } C3N-00324.miRNA-Seq.T.hg38 C3N-00324 UCEC miRNA-Seq tumor CPT0010820009 06ea7580-e066-43f2-8844-f67bea171e0a_mirnaseq_gdc_realn.bam 221672750 BAM harmonized CPTAC3 21b9cc35-b35b-41f8-b13f-1c1658e0311b 1a10ecf126e0011d67f7e9b4ad3855cc { 'aliquot_tag': 'ALQ_3b2236fa', 'gdc_sample_type': 'Primary Tumor' } C3N-00324.RNA-Seq.chimeric.T.hg38 C3N-00324 UCEC RNA-Seq tumor CPT0010820009 333ea6b8-622a-43e2-8071-44ed9af15a23.rna_seq.chimeric.gdc_realn.bam 174969564 BAM chimeric harmonized CPTAC3 4de3f70e-b147-4b59-afff-db4155178f94 dffd58d40be277d868c2146a6d576c55 { 'aliquot_tag': 'ALQ_3b2236fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-00324.RNA-Seq.genomic.T.hg38 C3N-00324 UCEC RNA-Seq tumor CPT0010820009 333ea6b8-622a-43e2-8071-44ed9af15a23.rna_seq.genomic.gdc_realn.bam 7385026644 BAM genomic harmonized CPTAC3 bd62a009-8f9e-4bd2-b8b7-3ac6961827a2 121b590cac4fff27c76948da0b1bf15c { 'aliquot_tag': 'ALQ_3b2236fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-00324.RNA-Seq.R1_L008.T C3N-00324 UCEC RNA-Seq tumor CPT0010820009 170818_UNC32-K00270_0050_AHL2FHBBXX_TTAGGC_S21_L008_R1_001.fastq.gz 3609157312 FASTQ R1_L008 unaligned CPTAC3 a76e636b-9fd0-4cf2-b0c6-78ed366d7c3d a138b6d49e9e4c9e5afdb95a36cf65c3 { 'aliquot_tag': 'ALQ_3b2236fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-00324.RNA-Seq.R2_L008.T C3N-00324 UCEC RNA-Seq tumor CPT0010820009 170818_UNC32-K00270_0050_AHL2FHBBXX_TTAGGC_S21_L008_R2_001.fastq.gz 3924023983 FASTQ R2_L008 unaligned CPTAC3 ced11262-32d0-42c6-a91f-2d3f801ed551 5fe9d62a6bd4824c880d7cde8aef546f { 'aliquot_tag': 'ALQ_3b2236fa', 'gdc_sample_type': 'Primary Tumor' } +C3N-00324.RNA-Seq.genomic.T.hg38 C3N-00324 UCEC RNA-Seq tumor CPT0010820009 333ea6b8-622a-43e2-8071-44ed9af15a23.rna_seq.genomic.gdc_realn.bam 7385026644 BAM genomic harmonized CPTAC3 1533a36c-0bda-4495-a816-bc005706fed7 121b590cac4fff27c76948da0b1bf15c { 'aliquot_tag': 'ALQ_3b2236fa', 'gdc_sample_type': 'Primary Tumor' } +C3N-00324.RNA-Seq.R1_L008.T C3N-00324 UCEC RNA-Seq tumor CPT0010820009 170818_UNC32-K00270_0050_AHL2FHBBXX_TTAGGC_S21_L008_R1_001.fastq.gz 3609157312 FASTQ R1_L008 unaligned CPTAC3 a76e636b-9fd0-4cf2-b0c6-78ed366d7c3d a138b6d49e9e4c9e5afdb95a36cf65c3 { 'aliquot_tag': 'ALQ_3b2236fa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00324.RNA-Seq.R2_L008.T C3N-00324 UCEC RNA-Seq tumor CPT0010820009 170818_UNC32-K00270_0050_AHL2FHBBXX_TTAGGC_S21_L008_R2_001.fastq.gz 3924023983 FASTQ R2_L008 unaligned CPTAC3 ced11262-32d0-42c6-a91f-2d3f801ed551 5fe9d62a6bd4824c880d7cde8aef546f { 'aliquot_tag': 'ALQ_3b2236fa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00324.RNA-Seq.transcriptome.T.hg38 C3N-00324 UCEC RNA-Seq tumor CPT0010820009 333ea6b8-622a-43e2-8071-44ed9af15a23.rna_seq.transcriptome.gdc_realn.bam 9199533680 BAM transcriptome harmonized CPTAC3 a58ca1e1-41c5-4e11-8ff9-210cd8fed79e 024cd34eb3ece4da58e9d8a85c3bcc2b { 'aliquot_tag': 'ALQ_3b2236fa', 'gdc_sample_type': 'Primary Tumor' } C3N-00324.WGS.N C3N-00324 UCEC WGS blood_normal CPT0010950002 CPT0010950002.WholeGenome.RP-1303.bam 62350240534 BAM aligned CPTAC3 75382ed6-be8d-438d-b0c6-390078fafbe9 8100f2fd3d01d4cb31398bcbb486b98c { 'aliquot_tag': 'ALQ_d58ce0c7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00324.WGS.N.hg38 C3N-00324 UCEC WGS blood_normal CPT0010950002 cd24c578-62a3-4d17-bf84-b1c439977cce_gdc_realn.bam 88905044030 BAM harmonized CPTAC3 913cfbfa-c656-4161-b42d-7d343b7cffeb 41f8a0e926d0b3739723da42d1bc8976 { 'aliquot_tag': 'ALQ_d58ce0c7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20261,9 +22029,9 @@ C3N-00326.MethArray.Red.T C3N-00326 UCEC Methylation Array tumor CPT0022530006 2 C3N-00326.miRNA-Seq.T C3N-00326 UCEC miRNA-Seq tumor CPT0022530009 190828_UNC32-K00270_0200_BH7GVJBBXY_CACCGG_S151_L008_R1_001.unaln.bam 302263559 BAM unaligned CPTAC3 2ec1d3a6-6eb9-4549-923b-c9c0ed518743 25b29324668867b3ff2269633b8f07ca { 'aliquot_tag': 'ALQ_a3cc1a5e', 'gdc_sample_type': 'Primary Tumor' } C3N-00326.miRNA-Seq.T.hg38 C3N-00326 UCEC miRNA-Seq tumor CPT0022530009 3f2bbbfd-2825-4b8e-9efe-e7c02019e804_mirnaseq_gdc_realn.bam 325626164 BAM harmonized CPTAC3 1c86a935-7106-48a4-8ccb-a9e5eaa48daa 97bdc974ba096163addabae1b07fc8a3 { 'aliquot_tag': 'ALQ_a3cc1a5e', 'gdc_sample_type': 'Primary Tumor' } C3N-00326.RNA-Seq.chimeric.T.hg38 C3N-00326 UCEC RNA-Seq tumor CPT0022530009 b2aa1a59-74b7-458d-9202-91ea6d177f24.rna_seq.chimeric.gdc_realn.bam 68784250 BAM chimeric harmonized CPTAC3 5225e16e-36ea-4995-8678-5a85b7c180cc fac70cf029327da16882c16405581a9e { 'aliquot_tag': 'ALQ_a3cc1a5e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00326.RNA-Seq.genomic.T.hg38 C3N-00326 UCEC RNA-Seq tumor CPT0022530009 b2aa1a59-74b7-458d-9202-91ea6d177f24.rna_seq.genomic.gdc_realn.bam 7620579349 BAM genomic harmonized CPTAC3 a102865e-5421-4456-9de8-c4f246aeb715 191096aad5d554fc1c72ea2a62aff391 { 'aliquot_tag': 'ALQ_a3cc1a5e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00326.RNA-Seq.R1_L008.T C3N-00326 UCEC RNA-Seq tumor CPT0022530009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L008_R1_001.fastq.gz 3688649938 FASTQ R1_L008 unaligned CPTAC3 fd7cf324-b89a-4558-a03f-d64ef2be88ff c67a8034f0b19fb5d78cba87fbd4fd3c { 'aliquot_tag': 'ALQ_a3cc1a5e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00326.RNA-Seq.R2_L008.T C3N-00326 UCEC RNA-Seq tumor CPT0022530009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L008_R2_001.fastq.gz 4012581715 FASTQ R2_L008 unaligned CPTAC3 90917b44-0072-4cec-bd84-9dd8885045f0 7ddd040fc6c2999b9f4697eb7d16d129 { 'aliquot_tag': 'ALQ_a3cc1a5e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00326.RNA-Seq.genomic.T.hg38 C3N-00326 UCEC RNA-Seq tumor CPT0022530009 b2aa1a59-74b7-458d-9202-91ea6d177f24.rna_seq.genomic.gdc_realn.bam 7620579349 BAM genomic harmonized CPTAC3 7fbd5556-5c4b-48e8-9a7e-8bcffe81e78f 191096aad5d554fc1c72ea2a62aff391 { 'aliquot_tag': 'ALQ_a3cc1a5e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00326.RNA-Seq.R1_L008.T C3N-00326 UCEC RNA-Seq tumor CPT0022530009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L008_R1_001.fastq.gz 3688649938 FASTQ R1_L008 unaligned CPTAC3 fd7cf324-b89a-4558-a03f-d64ef2be88ff c67a8034f0b19fb5d78cba87fbd4fd3c { 'aliquot_tag': 'ALQ_a3cc1a5e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00326.RNA-Seq.R2_L008.T C3N-00326 UCEC RNA-Seq tumor CPT0022530009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L008_R2_001.fastq.gz 4012581715 FASTQ R2_L008 unaligned CPTAC3 90917b44-0072-4cec-bd84-9dd8885045f0 7ddd040fc6c2999b9f4697eb7d16d129 { 'aliquot_tag': 'ALQ_a3cc1a5e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00326.RNA-Seq.transcriptome.T.hg38 C3N-00326 UCEC RNA-Seq tumor CPT0022530009 b2aa1a59-74b7-458d-9202-91ea6d177f24.rna_seq.transcriptome.gdc_realn.bam 9125657703 BAM transcriptome harmonized CPTAC3 bf956393-44b9-4274-aa3f-16f9b6dad62a 8a67c53225954711a5863feb49d8505a { 'aliquot_tag': 'ALQ_a3cc1a5e', 'gdc_sample_type': 'Primary Tumor' } C3N-00326.WGS.N C3N-00326 UCEC WGS blood_normal CPT0019690002 CPT0019690002.WholeGenome.RP-1303.bam 57655926001 BAM aligned CPTAC3 3d88a08d-2067-4b56-9053-6b500b54ce6b 13742c2a194e93a11dbbb80a8dceb679 { 'aliquot_tag': 'ALQ_74b2fac0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00326.WGS.N.hg38 C3N-00326 UCEC WGS blood_normal CPT0019690002 fe5e1dd1-ea01-4ff5-8019-c8d372a33339_gdc_realn.bam 82547038228 BAM harmonized CPTAC3 1d0fce2e-e790-4ff1-880b-67ecb7234d4b 2e54ae7c4b991c83a6f82764f8371751 { 'aliquot_tag': 'ALQ_74b2fac0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20278,9 +22046,9 @@ C3N-00328.MethArray.Red.T C3N-00328 UCEC Methylation Array tumor CPT0019840009 2 C3N-00328.miRNA-Seq.T C3N-00328 UCEC miRNA-Seq tumor CPT0019840006 181012_UNC32-K00270_0124_AH223CBBXY_TAGCTT_S31_L004_R1_001.unaln.bam 186912880 BAM unaligned CPTAC3 9b200823-7988-49f3-8378-5b8abec7796f 5339c2f9ba88fb38d7e7c537634975c5 { 'aliquot_tag': 'ALQ_b1459b18', 'gdc_sample_type': 'Primary Tumor' } C3N-00328.miRNA-Seq.T.hg38 C3N-00328 UCEC miRNA-Seq tumor CPT0019840006 4fc50a93-10d2-412b-a54b-7d79c27d3f86_mirnaseq_gdc_realn.bam 202287482 BAM harmonized CPTAC3 abf1208e-b3a8-4147-b011-effeaa63b88c 74b865655cd81d54e90a5af4803427e4 { 'aliquot_tag': 'ALQ_b1459b18', 'gdc_sample_type': 'Primary Tumor' } C3N-00328.RNA-Seq.chimeric.T.hg38 C3N-00328 UCEC RNA-Seq tumor CPT0019840006 741d4355-c5b5-4e21-bd66-8d8d93016f88.rna_seq.chimeric.gdc_realn.bam 121145120 BAM chimeric harmonized CPTAC3 62ebcc3e-d655-46bb-9ecc-babc3f8b2f57 0abf07369c22e6bcc21d38cbe2138313 { 'aliquot_tag': 'ALQ_b1459b18', 'gdc_sample_type': 'Primary Tumor' } -C3N-00328.RNA-Seq.genomic.T.hg38 C3N-00328 UCEC RNA-Seq tumor CPT0019840006 741d4355-c5b5-4e21-bd66-8d8d93016f88.rna_seq.genomic.gdc_realn.bam 7896192029 BAM genomic harmonized CPTAC3 d8885776-b3b6-45e6-a564-2ac2abeca1c0 33770bb0fa2cf7d946c4afb3cb9743a0 { 'aliquot_tag': 'ALQ_b1459b18', 'gdc_sample_type': 'Primary Tumor' } -C3N-00328.RNA-Seq.R1_L004.T C3N-00328 UCEC RNA-Seq tumor CPT0019840006 170818_UNC32-K00270_0051_BHLCCHBBXX_GCCAAT_S16_L004_R1_001.fastq.gz 3959039547 FASTQ R1_L004 unaligned CPTAC3 1409ef12-3919-4b88-b5b8-4a85576fadc7 d375125429815d99bd1a17a72aef7342 { 'aliquot_tag': 'ALQ_b1459b18', 'gdc_sample_type': 'Primary Tumor' } -C3N-00328.RNA-Seq.R2_L004.T C3N-00328 UCEC RNA-Seq tumor CPT0019840006 170818_UNC32-K00270_0051_BHLCCHBBXX_GCCAAT_S16_L004_R2_001.fastq.gz 4315617697 FASTQ R2_L004 unaligned CPTAC3 fba3daa2-3a66-4af6-aa02-ff5cb8d534eb acfc8732d00ec3a77175dcf29d0943fd { 'aliquot_tag': 'ALQ_b1459b18', 'gdc_sample_type': 'Primary Tumor' } +C3N-00328.RNA-Seq.genomic.T.hg38 C3N-00328 UCEC RNA-Seq tumor CPT0019840006 741d4355-c5b5-4e21-bd66-8d8d93016f88.rna_seq.genomic.gdc_realn.bam 7896192029 BAM genomic harmonized CPTAC3 ebc26da6-b81f-45c0-9f79-d15a6ece9484 33770bb0fa2cf7d946c4afb3cb9743a0 { 'aliquot_tag': 'ALQ_b1459b18', 'gdc_sample_type': 'Primary Tumor' } +C3N-00328.RNA-Seq.R1_L004.T C3N-00328 UCEC RNA-Seq tumor CPT0019840006 170818_UNC32-K00270_0051_BHLCCHBBXX_GCCAAT_S16_L004_R1_001.fastq.gz 3959039547 FASTQ R1_L004 unaligned CPTAC3 1409ef12-3919-4b88-b5b8-4a85576fadc7 d375125429815d99bd1a17a72aef7342 { 'aliquot_tag': 'ALQ_b1459b18', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00328.RNA-Seq.R2_L004.T C3N-00328 UCEC RNA-Seq tumor CPT0019840006 170818_UNC32-K00270_0051_BHLCCHBBXX_GCCAAT_S16_L004_R2_001.fastq.gz 4315617697 FASTQ R2_L004 unaligned CPTAC3 fba3daa2-3a66-4af6-aa02-ff5cb8d534eb acfc8732d00ec3a77175dcf29d0943fd { 'aliquot_tag': 'ALQ_b1459b18', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-00328.RNA-Seq.transcriptome.T.hg38 C3N-00328 UCEC RNA-Seq tumor CPT0019840006 741d4355-c5b5-4e21-bd66-8d8d93016f88.rna_seq.transcriptome.gdc_realn.bam 9917902583 BAM transcriptome harmonized CPTAC3 67e80ee4-cb24-4439-9f3c-aa14470556f5 02520de4c4cbebac6e3f2ce82d91d4cd { 'aliquot_tag': 'ALQ_b1459b18', 'gdc_sample_type': 'Primary Tumor' } C3N-00328.WGS.N C3N-00328 UCEC WGS blood_normal CPT0020410002 CPT0020410002.WholeGenome.RP-1303.bam 69792154820 BAM aligned CPTAC3 2ba4680d-fc29-473d-9be9-a07d458f26c9 0e756d6cd37ba28c47d5de5231e5a82e { 'aliquot_tag': 'ALQ_121d523a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00328.WGS.N.hg38 C3N-00328 UCEC WGS blood_normal CPT0020410002 290e3a66-502c-40c7-b6cc-e4783b31bf23_gdc_realn.bam 102291829553 BAM harmonized CPTAC3 bdfcac24-2bb8-471f-ab8b-6fe9f1f10c3b 1eff9678bf2f9d6331aac92384e68b0f { 'aliquot_tag': 'ALQ_121d523a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20298,12 +22066,12 @@ C3N-00333.miRNA-Seq.T C3N-00333 UCEC miRNA-Seq tumor CPT0011000009 181012_UNC32- C3N-00333.miRNA-Seq.T.hg38 C3N-00333 UCEC miRNA-Seq tumor CPT0011000009 0a9fc2fe-4b9d-485a-b7a9-f65ac2ef28e7_mirnaseq_gdc_realn.bam 269966713 BAM harmonized CPTAC3 802bf122-3cfd-4cea-b1ec-4fff5ae7beb5 ff6899e193f47c9af2aa7c8613d6fa3f { 'aliquot_tag': 'ALQ_bc6ec43', 'gdc_sample_type': 'Primary Tumor' } C3N-00333.RNA-Seq.chimeric.A.hg38 C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 21c23e1b-93c9-4c03-8fa5-f545c5e0edea.rna_seq.chimeric.gdc_realn.bam 83062772 BAM chimeric harmonized CPTAC3 d1e569f4-700f-4803-9f0e-81a455e6f9f9 af0ac7d453e7662384815dabc6579edc { 'aliquot_tag': 'ALQ_78b0f308', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00333.RNA-Seq.chimeric.T.hg38 C3N-00333 UCEC RNA-Seq tumor CPT0011000009 bcb03eb3-000b-403f-92b3-2732802dd9e0.rna_seq.chimeric.gdc_realn.bam 127161390 BAM chimeric harmonized CPTAC3 02fef471-5056-46e8-801e-3c24b87a3892 79125bdf048391a57bc3de5a7760b9a9 { 'aliquot_tag': 'ALQ_bc6ec43', 'gdc_sample_type': 'Primary Tumor' } -C3N-00333.RNA-Seq.genomic.A.hg38 C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 21c23e1b-93c9-4c03-8fa5-f545c5e0edea.rna_seq.genomic.gdc_realn.bam 8387959719 BAM genomic harmonized CPTAC3 b7d97884-a594-4f83-a358-2baab3b3b048 67b5f48111c348e73fbbe25cd0c06efe { 'aliquot_tag': 'ALQ_78b0f308', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00333.RNA-Seq.genomic.T.hg38 C3N-00333 UCEC RNA-Seq tumor CPT0011000009 bcb03eb3-000b-403f-92b3-2732802dd9e0.rna_seq.genomic.gdc_realn.bam 8667903647 BAM genomic harmonized CPTAC3 1f7c7a07-9cc0-408a-bf0c-87ba94a01cdf eaa21332d01f053eaf6431998aa8583d { 'aliquot_tag': 'ALQ_bc6ec43', 'gdc_sample_type': 'Primary Tumor' } -C3N-00333.RNA-Seq.R1_L002.A C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 171215_UNC32-K00270_0073_BHN3NFBBXX_CCGTCC_S5_L002_R1_001.fastq.gz 4161818501 FASTQ R1_L002 unaligned CPTAC3 3b0cb9d5-e735-43db-81bc-dd41c5404e88 07a162c0bf490402451010c729106924 { 'aliquot_tag': 'ALQ_78b0f308', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00333.RNA-Seq.R1_L008.T C3N-00333 UCEC RNA-Seq tumor CPT0011000009 170818_UNC32-K00270_0050_AHL2FHBBXX_TGACCA_S22_L008_R1_001.fastq.gz 4073011700 FASTQ R1_L008 unaligned CPTAC3 46b971bf-81ed-4c18-9272-3e65823123e2 b05ac9d74a565499f1b9676c25ad05c9 { 'aliquot_tag': 'ALQ_bc6ec43', 'gdc_sample_type': 'Primary Tumor' } -C3N-00333.RNA-Seq.R2_L002.A C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 171215_UNC32-K00270_0073_BHN3NFBBXX_CCGTCC_S5_L002_R2_001.fastq.gz 4173499576 FASTQ R2_L002 unaligned CPTAC3 2e65e11f-f0c6-43e1-a97f-42beb6bcf2e9 ba37e360dc7829bcf7279f86ae11fd6e { 'aliquot_tag': 'ALQ_78b0f308', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00333.RNA-Seq.R2_L008.T C3N-00333 UCEC RNA-Seq tumor CPT0011000009 170818_UNC32-K00270_0050_AHL2FHBBXX_TGACCA_S22_L008_R2_001.fastq.gz 4348896874 FASTQ R2_L008 unaligned CPTAC3 ae764c5a-f0ca-4a2e-b08e-ef1a65ddfe20 5fab770863eb22a663e333467336a837 { 'aliquot_tag': 'ALQ_bc6ec43', 'gdc_sample_type': 'Primary Tumor' } +C3N-00333.RNA-Seq.genomic.A.hg38 C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 21c23e1b-93c9-4c03-8fa5-f545c5e0edea.rna_seq.genomic.gdc_realn.bam 8387959719 BAM genomic harmonized CPTAC3 c8639d9e-b917-4b09-b704-35d04299be8f 67b5f48111c348e73fbbe25cd0c06efe { 'aliquot_tag': 'ALQ_78b0f308', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00333.RNA-Seq.genomic.T.hg38 C3N-00333 UCEC RNA-Seq tumor CPT0011000009 bcb03eb3-000b-403f-92b3-2732802dd9e0.rna_seq.genomic.gdc_realn.bam 8667903647 BAM genomic harmonized CPTAC3 28e9d054-9b01-4abb-b168-af0ce293ca95 eaa21332d01f053eaf6431998aa8583d { 'aliquot_tag': 'ALQ_bc6ec43', 'gdc_sample_type': 'Primary Tumor' } +C3N-00333.RNA-Seq.R1_L002.A C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 171215_UNC32-K00270_0073_BHN3NFBBXX_CCGTCC_S5_L002_R1_001.fastq.gz 4161818501 FASTQ R1_L002 unaligned CPTAC3 3b0cb9d5-e735-43db-81bc-dd41c5404e88 07a162c0bf490402451010c729106924 { 'aliquot_tag': 'ALQ_78b0f308', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-00333.RNA-Seq.R1_L008.T C3N-00333 UCEC RNA-Seq tumor CPT0011000009 170818_UNC32-K00270_0050_AHL2FHBBXX_TGACCA_S22_L008_R1_001.fastq.gz 4073011700 FASTQ R1_L008 unaligned CPTAC3 46b971bf-81ed-4c18-9272-3e65823123e2 b05ac9d74a565499f1b9676c25ad05c9 { 'aliquot_tag': 'ALQ_bc6ec43', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00333.RNA-Seq.R2_L002.A C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 171215_UNC32-K00270_0073_BHN3NFBBXX_CCGTCC_S5_L002_R2_001.fastq.gz 4173499576 FASTQ R2_L002 unaligned CPTAC3 2e65e11f-f0c6-43e1-a97f-42beb6bcf2e9 ba37e360dc7829bcf7279f86ae11fd6e { 'aliquot_tag': 'ALQ_78b0f308', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-00333.RNA-Seq.R2_L008.T C3N-00333 UCEC RNA-Seq tumor CPT0011000009 170818_UNC32-K00270_0050_AHL2FHBBXX_TGACCA_S22_L008_R2_001.fastq.gz 4348896874 FASTQ R2_L008 unaligned CPTAC3 ae764c5a-f0ca-4a2e-b08e-ef1a65ddfe20 5fab770863eb22a663e333467336a837 { 'aliquot_tag': 'ALQ_bc6ec43', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00333.RNA-Seq.transcriptome.A.hg38 C3N-00333 UCEC RNA-Seq tissue_normal CPT0011020005 21c23e1b-93c9-4c03-8fa5-f545c5e0edea.rna_seq.transcriptome.gdc_realn.bam 9762539265 BAM transcriptome harmonized CPTAC3 caa533d8-0ae6-4415-9fe7-17c0f3f4b67a ee530dd29dde2a5db479bcc85f373dcb { 'aliquot_tag': 'ALQ_78b0f308', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00333.RNA-Seq.transcriptome.T.hg38 C3N-00333 UCEC RNA-Seq tumor CPT0011000009 bcb03eb3-000b-403f-92b3-2732802dd9e0.rna_seq.transcriptome.gdc_realn.bam 10865660521 BAM transcriptome harmonized CPTAC3 0e052b35-eb2c-412c-80a8-34df49d292ce ea409ba57c360bab29b0fcf7783238e7 { 'aliquot_tag': 'ALQ_bc6ec43', 'gdc_sample_type': 'Primary Tumor' } C3N-00333.WGS.N C3N-00333 UCEC WGS blood_normal CPT0011100002 CPT0011100002.WholeGenome.RP-1303.bam 62707497278 BAM aligned CPTAC3 96d7fbca-f386-4e59-bd26-a6476f2ff9ee f16893e7632210e855f2c1f58c51ca13 { 'aliquot_tag': 'ALQ_5748e66e', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20320,8 +22088,8 @@ C3N-00334.miRNA-Seq.T C3N-00334 UCEC miRNA-Seq tumor CPT0018570009 181012_UNC32- C3N-00334.miRNA-Seq.T.hg38 C3N-00334 UCEC miRNA-Seq tumor CPT0018570009 201ca10a-5b76-4b10-b971-60cbe7700eb6_mirnaseq_gdc_realn.bam 193479454 BAM harmonized CPTAC3 88a17809-5e4e-480f-925d-1dce5022ad80 9ab19d3f339a3ac9d18bd1e7f7ef507e { 'aliquot_tag': 'ALQ_7cb3e433', 'gdc_sample_type': 'Primary Tumor' } C3N-00334.RNA-Seq.chimeric.T.hg38 C3N-00334 UCEC RNA-Seq tumor CPT0018570009 b420d02d-e07f-48b7-8184-2e2a9d8f0ee7.rna_seq.chimeric.gdc_realn.bam 130838339 BAM chimeric harmonized CPTAC3 db5723ad-7294-4fa7-9722-57b57a683db5 c3e72bb153f5de5115387a5f156a0940 { 'aliquot_tag': 'ALQ_7cb3e433', 'gdc_sample_type': 'Primary Tumor' } C3N-00334.RNA-Seq.genomic.T.hg38 C3N-00334 UCEC RNA-Seq tumor CPT0018570009 b420d02d-e07f-48b7-8184-2e2a9d8f0ee7.rna_seq.genomic.gdc_realn.bam 7043123397 BAM genomic harmonized CPTAC3 235a3bea-425a-487d-9175-fc5c861ee99c ade394bf4cfcdf117ca75f55f7bfa664 { 'aliquot_tag': 'ALQ_7cb3e433', 'gdc_sample_type': 'Primary Tumor' } -C3N-00334.RNA-Seq.R1_L006.T C3N-00334 UCEC RNA-Seq tumor CPT0018570009 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L006_R1_001.fastq.gz 3581021854 FASTQ R1_L006 unaligned CPTAC3 d92fcd95-f416-4785-aca7-f8c53a3099b1 1a7bc2169cff66424185a28b3efba90a { 'aliquot_tag': 'ALQ_7cb3e433', 'gdc_sample_type': 'Primary Tumor' } -C3N-00334.RNA-Seq.R2_L006.T C3N-00334 UCEC RNA-Seq tumor CPT0018570009 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L006_R2_001.fastq.gz 4015136626 FASTQ R2_L006 unaligned CPTAC3 18275a18-20bd-45fc-af1e-e340d86a97c6 7abf5400d7fcd146a1cbf97a54e04953 { 'aliquot_tag': 'ALQ_7cb3e433', 'gdc_sample_type': 'Primary Tumor' } +C3N-00334.RNA-Seq.R1_L006.T C3N-00334 UCEC RNA-Seq tumor CPT0018570009 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L006_R1_001.fastq.gz 3581021854 FASTQ R1_L006 unaligned CPTAC3 d92fcd95-f416-4785-aca7-f8c53a3099b1 1a7bc2169cff66424185a28b3efba90a { 'aliquot_tag': 'ALQ_7cb3e433', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00334.RNA-Seq.R2_L006.T C3N-00334 UCEC RNA-Seq tumor CPT0018570009 170818_UNC32-K00270_0050_AHL2FHBBXX_GGCTAC_S14_L006_R2_001.fastq.gz 4015136626 FASTQ R2_L006 unaligned CPTAC3 18275a18-20bd-45fc-af1e-e340d86a97c6 7abf5400d7fcd146a1cbf97a54e04953 { 'aliquot_tag': 'ALQ_7cb3e433', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-00334.RNA-Seq.transcriptome.T.hg38 C3N-00334 UCEC RNA-Seq tumor CPT0018570009 b420d02d-e07f-48b7-8184-2e2a9d8f0ee7.rna_seq.transcriptome.gdc_realn.bam 9037451204 BAM transcriptome harmonized CPTAC3 fab621ef-7690-4b39-8e80-3925281a9282 7b605c1307da63a68dbff1ab08268c51 { 'aliquot_tag': 'ALQ_7cb3e433', 'gdc_sample_type': 'Primary Tumor' } C3N-00334.WGS.N C3N-00334 UCEC WGS blood_normal CPT0018720002 CPT0018720002.WholeGenome.RP-1303.bam 74217601075 BAM aligned CPTAC3 70eae70f-26a8-4d36-a323-cf8848955952 8761a5015cc1af5b12b2cefed72a9d83 { 'aliquot_tag': 'ALQ_6e4913c0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00334.WGS.N.hg38 C3N-00334 UCEC WGS blood_normal CPT0018720002 20e9a00b-8692-41fd-b34b-3d1028376f13_gdc_realn.bam 106743124832 BAM harmonized CPTAC3 c11b3b83-b681-4e44-a9ac-7dd3a760752c d8c9d39d605954342c4b9a5d9a4f0fd4 { 'aliquot_tag': 'ALQ_6e4913c0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20336,9 +22104,9 @@ C3N-00335.MethArray.Red.T C3N-00335 UCEC Methylation Array tumor CPT0018790006 2 C3N-00335.miRNA-Seq.T C3N-00335 UCEC miRNA-Seq tumor CPT0018790009 181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L003_R1_001.unaln.bam 233646266 BAM unaligned CPTAC3 2094a704-5203-4cd1-8577-f818ddc7d9b0 22c2575cc491d155fc58e6e9e0856a4a { 'aliquot_tag': 'ALQ_8e4bfb59', 'gdc_sample_type': 'Primary Tumor' } C3N-00335.miRNA-Seq.T.hg38 C3N-00335 UCEC miRNA-Seq tumor CPT0018790009 14f10910-4d4c-4546-89fe-7f0a29621689_mirnaseq_gdc_realn.bam 254851396 BAM harmonized CPTAC3 9748b2c5-bdc4-436f-bffe-db0efeaf1624 975fd6fc3e59154e3d7f7538ab29942f { 'aliquot_tag': 'ALQ_8e4bfb59', 'gdc_sample_type': 'Primary Tumor' } C3N-00335.RNA-Seq.chimeric.T.hg38 C3N-00335 UCEC RNA-Seq tumor CPT0018790009 772925bc-6f54-401b-8f2c-7c7ee1a9dbee.rna_seq.chimeric.gdc_realn.bam 111868523 BAM chimeric harmonized CPTAC3 8e55906a-9e4d-4986-bcb5-4caedc9fdbe5 e6cd9a01203355bf7fb561868f29bf03 { 'aliquot_tag': 'ALQ_8e4bfb59', 'gdc_sample_type': 'Primary Tumor' } -C3N-00335.RNA-Seq.genomic.T.hg38 C3N-00335 UCEC RNA-Seq tumor CPT0018790009 772925bc-6f54-401b-8f2c-7c7ee1a9dbee.rna_seq.genomic.gdc_realn.bam 7294226631 BAM genomic harmonized CPTAC3 98b2a414-36d2-4593-b1c1-cf5788624030 85e344f4d04b445ac3a66a2a049adf6d { 'aliquot_tag': 'ALQ_8e4bfb59', 'gdc_sample_type': 'Primary Tumor' } -C3N-00335.RNA-Seq.R1_L006.T C3N-00335 UCEC RNA-Seq tumor CPT0018790009 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L006_R1_001.fastq.gz 3547291578 FASTQ R1_L006 unaligned CPTAC3 ed41b710-e03a-402f-a5f5-7edd980641ae f4244cac9a9cbf43fca27daa02ee1fe6 { 'aliquot_tag': 'ALQ_8e4bfb59', 'gdc_sample_type': 'Primary Tumor' } -C3N-00335.RNA-Seq.R2_L006.T C3N-00335 UCEC RNA-Seq tumor CPT0018790009 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L006_R2_001.fastq.gz 3865592246 FASTQ R2_L006 unaligned CPTAC3 71b23a8a-c3a4-4c35-bb58-f03e9e6d8da0 c55d008c1cdaedb7236f90f22acab809 { 'aliquot_tag': 'ALQ_8e4bfb59', 'gdc_sample_type': 'Primary Tumor' } +C3N-00335.RNA-Seq.genomic.T.hg38 C3N-00335 UCEC RNA-Seq tumor CPT0018790009 772925bc-6f54-401b-8f2c-7c7ee1a9dbee.rna_seq.genomic.gdc_realn.bam 7294226631 BAM genomic harmonized CPTAC3 d6fef36b-fcde-4aa3-a7e7-d5938e31806f 85e344f4d04b445ac3a66a2a049adf6d { 'aliquot_tag': 'ALQ_8e4bfb59', 'gdc_sample_type': 'Primary Tumor' } +C3N-00335.RNA-Seq.R1_L006.T C3N-00335 UCEC RNA-Seq tumor CPT0018790009 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L006_R1_001.fastq.gz 3547291578 FASTQ R1_L006 unaligned CPTAC3 ed41b710-e03a-402f-a5f5-7edd980641ae f4244cac9a9cbf43fca27daa02ee1fe6 { 'aliquot_tag': 'ALQ_8e4bfb59', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00335.RNA-Seq.R2_L006.T C3N-00335 UCEC RNA-Seq tumor CPT0018790009 170818_UNC32-K00270_0050_AHL2FHBBXX_CTTGTA_S13_L006_R2_001.fastq.gz 3865592246 FASTQ R2_L006 unaligned CPTAC3 71b23a8a-c3a4-4c35-bb58-f03e9e6d8da0 c55d008c1cdaedb7236f90f22acab809 { 'aliquot_tag': 'ALQ_8e4bfb59', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-00335.RNA-Seq.transcriptome.T.hg38 C3N-00335 UCEC RNA-Seq tumor CPT0018790009 772925bc-6f54-401b-8f2c-7c7ee1a9dbee.rna_seq.transcriptome.gdc_realn.bam 11558082184 BAM transcriptome harmonized CPTAC3 01ae5046-7b14-48d9-a16d-f2009830d649 ae4f73bf9ed4b1e7e71ecb55d6936ef8 { 'aliquot_tag': 'ALQ_8e4bfb59', 'gdc_sample_type': 'Primary Tumor' } C3N-00335.WGS.N C3N-00335 UCEC WGS blood_normal CPT0018910002 CPT0018910002.WholeGenome.RP-1303.bam 67299008998 BAM aligned CPTAC3 77c78fe7-1def-4cad-aca6-785757929fbd a58f952ff2d7d7127c4cd50c49f650a6 { 'aliquot_tag': 'ALQ_13e30860', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00335.WGS.N.hg38 C3N-00335 UCEC WGS blood_normal CPT0018910002 360ce993-b06e-488c-8d6b-645b93688df0_gdc_realn.bam 98373954956 BAM harmonized CPTAC3 90e40803-c8e8-42d5-892c-31d26341bab7 f51435d80db950a9bd16cd88a1b9d8b7 { 'aliquot_tag': 'ALQ_13e30860', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20353,9 +22121,9 @@ C3N-00337.MethArray.Red.T C3N-00337 UCEC Methylation Array tumor CPT0018960006 2 C3N-00337.miRNA-Seq.T C3N-00337 UCEC miRNA-Seq tumor CPT0018960013 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L003_R1_001.unaln.bam 203032469 BAM unaligned CPTAC3 c2d13145-6230-4249-a9b2-2deaa36a9c1f c4780de5e914599476e62aee72ae2cd3 { 'aliquot_tag': 'ALQ_cfdfd5a7', 'gdc_sample_type': 'Primary Tumor' } C3N-00337.miRNA-Seq.T.hg38 C3N-00337 UCEC miRNA-Seq tumor CPT0018960013 e28252c9-c297-422c-b8f1-d229d5002698_mirnaseq_gdc_realn.bam 219327453 BAM harmonized CPTAC3 553a72ec-de1a-45e6-9f15-a66f519c4956 ae1f8aaec038156418c1ebe37f5d6e6d { 'aliquot_tag': 'ALQ_cfdfd5a7', 'gdc_sample_type': 'Primary Tumor' } C3N-00337.RNA-Seq.chimeric.T.hg38 C3N-00337 UCEC RNA-Seq tumor CPT0018960013 c3f4b6d3-3f96-4d3d-9b28-d4289f33d106.rna_seq.chimeric.gdc_realn.bam 86687550 BAM chimeric harmonized CPTAC3 edf5e11c-c0be-4239-8e73-278feeb718b9 f72206d772e7e99d547b409e1309d504 { 'aliquot_tag': 'ALQ_cfdfd5a7', 'gdc_sample_type': 'Primary Tumor' } -C3N-00337.RNA-Seq.genomic.T.hg38 C3N-00337 UCEC RNA-Seq tumor CPT0018960013 c3f4b6d3-3f96-4d3d-9b28-d4289f33d106.rna_seq.genomic.gdc_realn.bam 7381831019 BAM genomic harmonized CPTAC3 d2f80657-00e5-486f-8e1d-7cb4ede9520a a31c7b941555d9542058dbe881eb6e40 { 'aliquot_tag': 'ALQ_cfdfd5a7', 'gdc_sample_type': 'Primary Tumor' } -C3N-00337.RNA-Seq.R1_L005.T C3N-00337 UCEC RNA-Seq tumor CPT0018960013 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L005_R1_001.fastq.gz 3574102098 FASTQ R1_L005 unaligned CPTAC3 2ed2fd9d-d69e-4924-bcac-555bfa24030e 3026ba98c89ef90ad8012d159148aede { 'aliquot_tag': 'ALQ_cfdfd5a7', 'gdc_sample_type': 'Primary Tumor' } -C3N-00337.RNA-Seq.R2_L005.T C3N-00337 UCEC RNA-Seq tumor CPT0018960013 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L005_R2_001.fastq.gz 3742480576 FASTQ R2_L005 unaligned CPTAC3 6d9108cf-e7d8-4040-8e1d-3f707ee381c8 6e98311f6d227ca5a52357b0e3c19999 { 'aliquot_tag': 'ALQ_cfdfd5a7', 'gdc_sample_type': 'Primary Tumor' } +C3N-00337.RNA-Seq.genomic.T.hg38 C3N-00337 UCEC RNA-Seq tumor CPT0018960013 c3f4b6d3-3f96-4d3d-9b28-d4289f33d106.rna_seq.genomic.gdc_realn.bam 7381831019 BAM genomic harmonized CPTAC3 d642036b-8c99-43e9-b708-6fd2e36b819f a31c7b941555d9542058dbe881eb6e40 { 'aliquot_tag': 'ALQ_cfdfd5a7', 'gdc_sample_type': 'Primary Tumor' } +C3N-00337.RNA-Seq.R1_L005.T C3N-00337 UCEC RNA-Seq tumor CPT0018960013 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L005_R1_001.fastq.gz 3574102098 FASTQ R1_L005 unaligned CPTAC3 2ed2fd9d-d69e-4924-bcac-555bfa24030e 3026ba98c89ef90ad8012d159148aede { 'aliquot_tag': 'ALQ_cfdfd5a7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00337.RNA-Seq.R2_L005.T C3N-00337 UCEC RNA-Seq tumor CPT0018960013 170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L005_R2_001.fastq.gz 3742480576 FASTQ R2_L005 unaligned CPTAC3 6d9108cf-e7d8-4040-8e1d-3f707ee381c8 6e98311f6d227ca5a52357b0e3c19999 { 'aliquot_tag': 'ALQ_cfdfd5a7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00337.RNA-Seq.transcriptome.T.hg38 C3N-00337 UCEC RNA-Seq tumor CPT0018960013 c3f4b6d3-3f96-4d3d-9b28-d4289f33d106.rna_seq.transcriptome.gdc_realn.bam 8391817521 BAM transcriptome harmonized CPTAC3 84946eb2-18d9-49ad-b972-edcad384906e 30bb498278383db856cae49013378cb9 { 'aliquot_tag': 'ALQ_cfdfd5a7', 'gdc_sample_type': 'Primary Tumor' } C3N-00337.WGS.N C3N-00337 UCEC WGS blood_normal CPT0019100002 CPT0019100002.WholeGenome.RP-1303.bam 70728738325 BAM aligned CPTAC3 f5ba38e4-9ecb-4737-9eee-6d71c65ef4cf 1cf6c0884fe5643918023e61abed3b64 { 'aliquot_tag': 'ALQ_64a7a809', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00337.WGS.N.hg38 C3N-00337 UCEC WGS blood_normal CPT0019100002 cec2f45d-c155-483f-97df-221ca574f6b9_gdc_realn.bam 105361244155 BAM harmonized CPTAC3 0686705a-97fa-4c41-b9fa-15664a310849 b6238198f5cfb0cf75eaeefb8faca143 { 'aliquot_tag': 'ALQ_64a7a809', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20371,8 +22139,8 @@ C3N-00339.miRNA-Seq.T C3N-00339 UCEC miRNA-Seq tumor CPT0020530006 181113_UNC31- C3N-00339.miRNA-Seq.T.hg38 C3N-00339 UCEC miRNA-Seq tumor CPT0020530006 919ba823-cf11-4ef1-9848-21cfb3cb19d2_mirnaseq_gdc_realn.bam 176606533 BAM harmonized CPTAC3 23215099-1d30-4423-90f7-dd4364387bc2 a054fd6ae3a403088c45299d28f66836 { 'aliquot_tag': 'ALQ_a4ec16e6', 'gdc_sample_type': 'Primary Tumor' } C3N-00339.RNA-Seq.chimeric.T.hg38 C3N-00339 UCEC RNA-Seq tumor CPT0020530006 ee1d857b-4dd9-4861-9506-7d012f7968f0.rna_seq.chimeric.gdc_realn.bam 75246930 BAM chimeric harmonized CPTAC3 ec1c9468-dd54-4100-8549-18d853cfee60 0ec453a257ee051631d42c243d7c7a1d { 'aliquot_tag': 'ALQ_a4ec16e6', 'gdc_sample_type': 'Primary Tumor' } C3N-00339.RNA-Seq.genomic.T.hg38 C3N-00339 UCEC RNA-Seq tumor CPT0020530006 ee1d857b-4dd9-4861-9506-7d012f7968f0.rna_seq.genomic.gdc_realn.bam 6545746008 BAM genomic harmonized CPTAC3 2655eeb5-10b2-45e4-8256-42aa598faa93 2d930cdf9eb3a2951925affd1fa3a4b8 { 'aliquot_tag': 'ALQ_a4ec16e6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00339.RNA-Seq.R1_L003.T C3N-00339 UCEC RNA-Seq tumor CPT0020530006 170818_UNC32-K00270_0051_BHLCCHBBXX_CAGATC_S9_L003_R1_001.fastq.gz 3440816927 FASTQ R1_L003 unaligned CPTAC3 b583347d-5091-47aa-88f4-f13b6ccdbc9b 15b61845fa7ae85615b1703b468fa885 { 'aliquot_tag': 'ALQ_a4ec16e6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00339.RNA-Seq.R2_L003.T C3N-00339 UCEC RNA-Seq tumor CPT0020530006 170818_UNC32-K00270_0051_BHLCCHBBXX_CAGATC_S9_L003_R2_001.fastq.gz 3737270066 FASTQ R2_L003 unaligned CPTAC3 fb5ba732-fdb9-4fb1-a189-ca27dc978cfd 209bb41d729de6f50ecafb1be32c1add { 'aliquot_tag': 'ALQ_a4ec16e6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00339.RNA-Seq.R1_L003.T C3N-00339 UCEC RNA-Seq tumor CPT0020530006 170818_UNC32-K00270_0051_BHLCCHBBXX_CAGATC_S9_L003_R1_001.fastq.gz 3440816927 FASTQ R1_L003 unaligned CPTAC3 b583347d-5091-47aa-88f4-f13b6ccdbc9b 15b61845fa7ae85615b1703b468fa885 { 'aliquot_tag': 'ALQ_a4ec16e6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00339.RNA-Seq.R2_L003.T C3N-00339 UCEC RNA-Seq tumor CPT0020530006 170818_UNC32-K00270_0051_BHLCCHBBXX_CAGATC_S9_L003_R2_001.fastq.gz 3737270066 FASTQ R2_L003 unaligned CPTAC3 fb5ba732-fdb9-4fb1-a189-ca27dc978cfd 209bb41d729de6f50ecafb1be32c1add { 'aliquot_tag': 'ALQ_a4ec16e6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-00339.RNA-Seq.transcriptome.T.hg38 C3N-00339 UCEC RNA-Seq tumor CPT0020530006 ee1d857b-4dd9-4861-9506-7d012f7968f0.rna_seq.transcriptome.gdc_realn.bam 9469088797 BAM transcriptome harmonized CPTAC3 16e2bb37-9c78-4a82-909f-c4d2343444be e2fd9f199328d2303e3d8d00f363fdfa { 'aliquot_tag': 'ALQ_a4ec16e6', 'gdc_sample_type': 'Primary Tumor' } C3N-00339.WGS.N C3N-00339 UCEC WGS blood_normal CPT0020600002 CPT0020600002.WholeGenome.RP-1303.bam 55829048756 BAM aligned CPTAC3 3948c348-84d7-4a2d-a1bb-5f8f71290d3d e8c00f48961f04a01e6350ca21cc2135 { 'aliquot_tag': 'ALQ_62b5da81', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00339.WGS.N.hg38 C3N-00339 UCEC WGS blood_normal CPT0020600002 f9f0e294-4ac5-4fca-b75c-bdaa29f51037_gdc_realn.bam 79699800791 BAM harmonized CPTAC3 508fe33e-3cf2-4659-be9f-669d5d54e09d 834536031d90ac38dc61233d378c5c20 { 'aliquot_tag': 'ALQ_62b5da81', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20388,8 +22156,8 @@ C3N-00340.miRNA-Seq.T C3N-00340 UCEC miRNA-Seq tumor CPT0022620009 181113_UNC31- C3N-00340.miRNA-Seq.T.hg38 C3N-00340 UCEC miRNA-Seq tumor CPT0022620009 d5949ff1-adfa-4197-808a-c3178d4c5ccf_mirnaseq_gdc_realn.bam 339831034 BAM harmonized CPTAC3 d7c1732f-2edc-4aac-847f-d180d97b06af fdba94c72ddc363bc212bfa894096d2d { 'aliquot_tag': 'ALQ_18384140', 'gdc_sample_type': 'Primary Tumor' } C3N-00340.RNA-Seq.chimeric.T.hg38 C3N-00340 UCEC RNA-Seq tumor CPT0022620009 882b2c45-8567-4c2c-b279-2e72ff0b04c4.rna_seq.chimeric.gdc_realn.bam 80805009 BAM chimeric harmonized CPTAC3 28561b99-5d17-444b-bd77-f32d8b4fe0e3 ce1ca1b552a9eeaa7977daa763805108 { 'aliquot_tag': 'ALQ_18384140', 'gdc_sample_type': 'Primary Tumor' } C3N-00340.RNA-Seq.genomic.T.hg38 C3N-00340 UCEC RNA-Seq tumor CPT0022620009 882b2c45-8567-4c2c-b279-2e72ff0b04c4.rna_seq.genomic.gdc_realn.bam 11459517217 BAM genomic harmonized CPTAC3 4d1c3492-cdbb-4646-a87e-efc6bd9ad55d 9e73a8b0ceec324798af16e8491b44e0 { 'aliquot_tag': 'ALQ_18384140', 'gdc_sample_type': 'Primary Tumor' } -C3N-00340.RNA-Seq.R1_L006.T C3N-00340 UCEC RNA-Seq tumor CPT0022620009 170823_UNC31-K00269_0075_AHLCW5BBXX_GTCCGC_S23_L006_R1_001.fastq.gz 5338738796 FASTQ R1_L006 unaligned CPTAC3 9c6560e4-984b-4de4-b784-06e2d358ee2d 9dd9163ff6d694a7f74a8cfaed94a456 { 'aliquot_tag': 'ALQ_18384140', 'gdc_sample_type': 'Primary Tumor' } -C3N-00340.RNA-Seq.R2_L006.T C3N-00340 UCEC RNA-Seq tumor CPT0022620009 170823_UNC31-K00269_0075_AHLCW5BBXX_GTCCGC_S23_L006_R2_001.fastq.gz 5783172010 FASTQ R2_L006 unaligned CPTAC3 b3de2a7e-ac96-42dd-bcf2-61f14df637c6 45bbed79dbd98b89b72f86cb3d1246b6 { 'aliquot_tag': 'ALQ_18384140', 'gdc_sample_type': 'Primary Tumor' } +C3N-00340.RNA-Seq.R1_L006.T C3N-00340 UCEC RNA-Seq tumor CPT0022620009 170823_UNC31-K00269_0075_AHLCW5BBXX_GTCCGC_S23_L006_R1_001.fastq.gz 5338738796 FASTQ R1_L006 unaligned CPTAC3 9c6560e4-984b-4de4-b784-06e2d358ee2d 9dd9163ff6d694a7f74a8cfaed94a456 { 'aliquot_tag': 'ALQ_18384140', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00340.RNA-Seq.R2_L006.T C3N-00340 UCEC RNA-Seq tumor CPT0022620009 170823_UNC31-K00269_0075_AHLCW5BBXX_GTCCGC_S23_L006_R2_001.fastq.gz 5783172010 FASTQ R2_L006 unaligned CPTAC3 b3de2a7e-ac96-42dd-bcf2-61f14df637c6 45bbed79dbd98b89b72f86cb3d1246b6 { 'aliquot_tag': 'ALQ_18384140', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-00340.RNA-Seq.transcriptome.T.hg38 C3N-00340 UCEC RNA-Seq tumor CPT0022620009 882b2c45-8567-4c2c-b279-2e72ff0b04c4.rna_seq.transcriptome.gdc_realn.bam 15484728078 BAM transcriptome harmonized CPTAC3 7b256dbf-514a-4388-8744-bcaef5223d95 89406356056561b9d7e898b38bbdcbd9 { 'aliquot_tag': 'ALQ_18384140', 'gdc_sample_type': 'Primary Tumor' } C3N-00340.WGS.N C3N-00340 UCEC WGS blood_normal CPT0020710002 CPT0020710002.WholeGenome.RP-1303.bam 67600994210 BAM aligned CPTAC3 7a30f8e4-db7d-46e7-9775-e0cfa59c6e1d 1a3da6b5c7224699c95b49386828bc4b { 'aliquot_tag': 'ALQ_94892094', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00340.WGS.N.hg38 C3N-00340 UCEC WGS blood_normal CPT0020710002 473ea35b-e97c-4d26-9321-84efd530f725_gdc_realn.bam 97139036145 BAM harmonized CPTAC3 32560c79-2b82-4441-b1f2-fbd2838043ae ed36d5f0c20f6b9e6dbfaf002ad3b55a { 'aliquot_tag': 'ALQ_94892094', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20404,9 +22172,9 @@ C3N-00377.ADD_b4f9a5c.miRNA-Seq.T.hg38 C3N-00377 UCEC miRNA-Seq tumor CPT0021650 C3N-00377.MethArray.Green.T C3N-00377 UCEC Methylation Array tumor CPT0021650009 202178770111_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 1d9c8cbc-c76b-4122-998b-87193e4b0bf7 f3e06ecff3c4d3ad843faf88ece826e3 { 'aliquot_tag': 'ALQ_9bf087cd', 'gdc_sample_type': 'Primary Tumor' } C3N-00377.MethArray.Red.T C3N-00377 UCEC Methylation Array tumor CPT0021650009 202178770111_R02C01_Red.idat 13676231 IDAT Red NA CPTAC3 e875e261-9713-466a-b7bb-e6f460fa8270 25e6b3e80f7b800c6aa34f61e4aab60f { 'aliquot_tag': 'ALQ_9bf087cd', 'gdc_sample_type': 'Primary Tumor' } C3N-00377.RNA-Seq.chimeric.T.hg38 C3N-00377 UCEC RNA-Seq tumor CPT0021650013 df2f394d-807a-4779-bb79-e04a55935570.rna_seq.chimeric.gdc_realn.bam 56432488 BAM chimeric harmonized CPTAC3 f14c7adc-de4c-4829-8a0b-16888fbd5c3f a36b4ef82dcd75e46316a2702d21c30c { 'aliquot_tag': 'ALQ_623e5f92', 'gdc_sample_type': 'Primary Tumor' } -C3N-00377.RNA-Seq.genomic.T.hg38 C3N-00377 UCEC RNA-Seq tumor CPT0021650013 df2f394d-807a-4779-bb79-e04a55935570.rna_seq.genomic.gdc_realn.bam 8565063148 BAM genomic harmonized CPTAC3 0ffae164-d096-418f-aa0f-bbda88b4e3a9 2eb4cad5d77b14f273fc26945b014394 { 'aliquot_tag': 'ALQ_623e5f92', 'gdc_sample_type': 'Primary Tumor' } -C3N-00377.RNA-Seq.R1_L003.T C3N-00377 UCEC RNA-Seq tumor CPT0021650013 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L003_R1_001.fastq.gz 4517871402 FASTQ R1_L003 unaligned CPTAC3 927fd63f-62e5-491b-8c64-bdb58cb0881c 874266381c0435be1d3049f93eb1aa43 { 'aliquot_tag': 'ALQ_623e5f92', 'gdc_sample_type': 'Primary Tumor' } -C3N-00377.RNA-Seq.R2_L003.T C3N-00377 UCEC RNA-Seq tumor CPT0021650013 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L003_R2_001.fastq.gz 4774004137 FASTQ R2_L003 unaligned CPTAC3 bc45d610-dace-4837-a41d-4a4ea3cb8b5c ffc86c6e38bac110b4e1cf1d5787f3e7 { 'aliquot_tag': 'ALQ_623e5f92', 'gdc_sample_type': 'Primary Tumor' } +C3N-00377.RNA-Seq.genomic.T.hg38 C3N-00377 UCEC RNA-Seq tumor CPT0021650013 df2f394d-807a-4779-bb79-e04a55935570.rna_seq.genomic.gdc_realn.bam 8565063148 BAM genomic harmonized CPTAC3 1a302d4d-f2e2-4484-96bc-6d21b63a6525 2eb4cad5d77b14f273fc26945b014394 { 'aliquot_tag': 'ALQ_623e5f92', 'gdc_sample_type': 'Primary Tumor' } +C3N-00377.RNA-Seq.R1_L003.T C3N-00377 UCEC RNA-Seq tumor CPT0021650013 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L003_R1_001.fastq.gz 4517871402 FASTQ R1_L003 unaligned CPTAC3 927fd63f-62e5-491b-8c64-bdb58cb0881c 874266381c0435be1d3049f93eb1aa43 { 'aliquot_tag': 'ALQ_623e5f92', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00377.RNA-Seq.R2_L003.T C3N-00377 UCEC RNA-Seq tumor CPT0021650013 171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L003_R2_001.fastq.gz 4774004137 FASTQ R2_L003 unaligned CPTAC3 bc45d610-dace-4837-a41d-4a4ea3cb8b5c ffc86c6e38bac110b4e1cf1d5787f3e7 { 'aliquot_tag': 'ALQ_623e5f92', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-00377.RNA-Seq.transcriptome.T.hg38 C3N-00377 UCEC RNA-Seq tumor CPT0021650013 df2f394d-807a-4779-bb79-e04a55935570.rna_seq.transcriptome.gdc_realn.bam 11038047736 BAM transcriptome harmonized CPTAC3 28c187aa-a0cc-423b-93ba-13de08e9ff99 eb0dc54da955bd1bd36c869c09abd2fa { 'aliquot_tag': 'ALQ_623e5f92', 'gdc_sample_type': 'Primary Tumor' } C3N-00377.WGS.N C3N-00377 UCEC WGS blood_normal CPT0021710002 CPT0021710002.WholeGenome.RP-1303.bam 63545834158 BAM aligned CPTAC3 eaf75e80-765f-4842-a58f-c59ba336a786 c5054d3b98f7af11470af9056c6d98e5 { 'aliquot_tag': 'ALQ_32fe2b20', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00377.WGS.N.hg38 C3N-00377 UCEC WGS blood_normal CPT0021710002 e41f9914-e7d0-41c2-bf1c-7cc9ef6c2a8c_gdc_realn.bam 92298249123 BAM harmonized CPTAC3 d41328fd-e13e-41ad-affa-a32acce44ecc 243bbdd70a4c6ba44a17fcf10a1f049e { 'aliquot_tag': 'ALQ_32fe2b20', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20421,9 +22189,9 @@ C3N-00379.MethArray.Red.T C3N-00379 UCEC Methylation Array tumor CPT0015520009 2 C3N-00379.miRNA-Seq.T C3N-00379 UCEC miRNA-Seq tumor CPT0015520006 181113_UNC31-K00269_0164_AH23NNBBXY_CACGAT_S7_L003_R1_001.unaln.bam 412032907 BAM unaligned CPTAC3 2352620b-d346-4aa1-8b6b-e717a3129954 64c6ba53e1921bc18c400f29f1deb850 { 'aliquot_tag': 'ALQ_453b1712', 'gdc_sample_type': 'Primary Tumor' } C3N-00379.miRNA-Seq.T.hg38 C3N-00379 UCEC miRNA-Seq tumor CPT0015520006 a24e6932-70f3-4434-9142-083368ec340e_mirnaseq_gdc_realn.bam 466022560 BAM harmonized CPTAC3 ffda6dd1-34d5-4d15-9ce0-1990ad176d73 525d764652c693da1af01314672507bd { 'aliquot_tag': 'ALQ_453b1712', 'gdc_sample_type': 'Primary Tumor' } C3N-00379.RNA-Seq.chimeric.T.hg38 C3N-00379 UCEC RNA-Seq tumor CPT0015520006 5461c4fa-4a05-411a-b445-1634d0c099c8.rna_seq.chimeric.gdc_realn.bam 109442189 BAM chimeric harmonized CPTAC3 939c373c-f31b-4a0d-babc-0a6be3f8bdd4 1c0beae9afe57d5c1a4943961ad2690e { 'aliquot_tag': 'ALQ_453b1712', 'gdc_sample_type': 'Primary Tumor' } -C3N-00379.RNA-Seq.genomic.T.hg38 C3N-00379 UCEC RNA-Seq tumor CPT0015520006 5461c4fa-4a05-411a-b445-1634d0c099c8.rna_seq.genomic.gdc_realn.bam 13723166783 BAM genomic harmonized CPTAC3 9f37868b-9b99-47bd-b64a-6238b494b214 4342f0a611f26f77d16cc3b9cf7f16ee { 'aliquot_tag': 'ALQ_453b1712', 'gdc_sample_type': 'Primary Tumor' } -C3N-00379.RNA-Seq.R1_L001.T C3N-00379 UCEC RNA-Seq tumor CPT0015520006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATTCCT_S1_L001_R1_001.fastq.gz 6517268788 FASTQ R1_L001 unaligned CPTAC3 8b3b442d-0e88-4e6c-84b0-b4eaae2be844 bbaec1bf38bdfa7b42683a2a9d75ab0e { 'aliquot_tag': 'ALQ_453b1712', 'gdc_sample_type': 'Primary Tumor' } -C3N-00379.RNA-Seq.R2_L001.T C3N-00379 UCEC RNA-Seq tumor CPT0015520006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATTCCT_S1_L001_R2_001.fastq.gz 6971123033 FASTQ R2_L001 unaligned CPTAC3 9c1db68b-16f9-42cd-b818-cd95a5236e11 b5c6ec19a42dc60bb38d788b0489c076 { 'aliquot_tag': 'ALQ_453b1712', 'gdc_sample_type': 'Primary Tumor' } +C3N-00379.RNA-Seq.genomic.T.hg38 C3N-00379 UCEC RNA-Seq tumor CPT0015520006 5461c4fa-4a05-411a-b445-1634d0c099c8.rna_seq.genomic.gdc_realn.bam 13723166783 BAM genomic harmonized CPTAC3 45cf5891-1921-4ce5-8db6-a641996c45dd 4342f0a611f26f77d16cc3b9cf7f16ee { 'aliquot_tag': 'ALQ_453b1712', 'gdc_sample_type': 'Primary Tumor' } +C3N-00379.RNA-Seq.R1_L001.T C3N-00379 UCEC RNA-Seq tumor CPT0015520006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATTCCT_S1_L001_R1_001.fastq.gz 6517268788 FASTQ R1_L001 unaligned CPTAC3 8b3b442d-0e88-4e6c-84b0-b4eaae2be844 bbaec1bf38bdfa7b42683a2a9d75ab0e { 'aliquot_tag': 'ALQ_453b1712', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00379.RNA-Seq.R2_L001.T C3N-00379 UCEC RNA-Seq tumor CPT0015520006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATTCCT_S1_L001_R2_001.fastq.gz 6971123033 FASTQ R2_L001 unaligned CPTAC3 9c1db68b-16f9-42cd-b818-cd95a5236e11 b5c6ec19a42dc60bb38d788b0489c076 { 'aliquot_tag': 'ALQ_453b1712', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-00379.RNA-Seq.transcriptome.T.hg38 C3N-00379 UCEC RNA-Seq tumor CPT0015520006 5461c4fa-4a05-411a-b445-1634d0c099c8.rna_seq.transcriptome.gdc_realn.bam 16290383665 BAM transcriptome harmonized CPTAC3 845d5748-c197-45bd-a695-10acadde37df b84c8bde82a74ccee2121a6d6f54e911 { 'aliquot_tag': 'ALQ_453b1712', 'gdc_sample_type': 'Primary Tumor' } C3N-00379.WGS.N C3N-00379 UCEC WGS blood_normal CPT0015740002 CPT0015740002.WholeGenome.RP-1303.bam 55192139656 BAM aligned CPTAC3 896e3ea7-e706-4e28-8829-76b6b014c6eb ed29aba9243990ca9a0d9f6fe42d67be { 'aliquot_tag': 'ALQ_80de87a0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00379.WGS.N.hg38 C3N-00379 UCEC WGS blood_normal CPT0015740002 0041944a-53b2-47b2-8a4e-d50b00467f10_gdc_realn.bam 80629464047 BAM harmonized CPTAC3 546f1c4f-8040-4463-8bdf-e6b7db95345b a3ca45029de725b2936013c2d45f2ee7 { 'aliquot_tag': 'ALQ_80de87a0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20438,9 +22206,9 @@ C3N-00380.MethArray.Red.T C3N-00380 CCRCC Methylation Array tumor CPT0021240009 C3N-00380.miRNA-Seq.T C3N-00380 CCRCC miRNA-Seq tumor CPT0021240006 181012_UNC32-K00270_0124_AH223CBBXY_AGTCAA_S34_L004_R1_001.unaln.bam 245685015 BAM unaligned CPTAC3 2b771e29-97f8-41a4-9bb6-64293c84d832 87368efd6b3301485f3b1f711e1a1195 { 'aliquot_tag': 'ALQ_adbef1fa', 'gdc_sample_type': 'Primary Tumor' } C3N-00380.miRNA-Seq.T.hg38 C3N-00380 CCRCC miRNA-Seq tumor CPT0021240006 1f28faad-eb1a-453c-908c-b1016641056e_mirnaseq_gdc_realn.bam 268196640 BAM harmonized CPTAC3 b2d7f643-80f9-4688-bf2a-076fae00c395 298f036df1c1c82a0aedb0841cc8e594 { 'aliquot_tag': 'ALQ_adbef1fa', 'gdc_sample_type': 'Primary Tumor' } C3N-00380.RNA-Seq.chimeric.T.hg38 C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 6711aa71-ad63-4539-bd60-2870e152ab98.rna_seq.chimeric.gdc_realn.bam 231090008 BAM chimeric harmonized CPTAC3 843d37bd-4e72-4bd8-a08b-976f9fc00ea2 a368b0d7ab0087f83e322f89cd273551 { 'aliquot_tag': 'ALQ_adbef1fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-00380.RNA-Seq.genomic.T.hg38 C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 6711aa71-ad63-4539-bd60-2870e152ab98.rna_seq.genomic.gdc_realn.bam 7804966886 BAM genomic harmonized CPTAC3 344ee44e-6aa9-4895-9a1a-2704f0f0c5d2 cb44469ebb0053788f57b283df7b08d9 { 'aliquot_tag': 'ALQ_adbef1fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-00380.RNA-Seq.R1_L003.T C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 170818_UNC32-K00270_0051_BHLCCHBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4253947421 FASTQ R1_L003 unaligned CPTAC3 bb233eea-a1a8-4de1-8b0f-8be9aca0debf 026ba4b0db034ee9e8b7463b93aed48d { 'aliquot_tag': 'ALQ_adbef1fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-00380.RNA-Seq.R2_L003.T C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 170818_UNC32-K00270_0051_BHLCCHBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 4626882444 FASTQ R2_L003 unaligned CPTAC3 6eaa6689-369f-438c-988a-719096d578cb 42f4a7c2d73ef458394551562239f0d0 { 'aliquot_tag': 'ALQ_adbef1fa', 'gdc_sample_type': 'Primary Tumor' } +C3N-00380.RNA-Seq.genomic.T.hg38 C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 6711aa71-ad63-4539-bd60-2870e152ab98.rna_seq.genomic.gdc_realn.bam 7804966886 BAM genomic harmonized CPTAC3 4afe0b0f-6055-4bff-938d-b45502741d4b cb44469ebb0053788f57b283df7b08d9 { 'aliquot_tag': 'ALQ_adbef1fa', 'gdc_sample_type': 'Primary Tumor' } +C3N-00380.RNA-Seq.R1_L003.T C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 170818_UNC32-K00270_0051_BHLCCHBBXX_TAGCTT_S10_L003_R1_001.fastq.gz 4253947421 FASTQ R1_L003 unaligned CPTAC3 bb233eea-a1a8-4de1-8b0f-8be9aca0debf 026ba4b0db034ee9e8b7463b93aed48d { 'aliquot_tag': 'ALQ_adbef1fa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00380.RNA-Seq.R2_L003.T C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 170818_UNC32-K00270_0051_BHLCCHBBXX_TAGCTT_S10_L003_R2_001.fastq.gz 4626882444 FASTQ R2_L003 unaligned CPTAC3 6eaa6689-369f-438c-988a-719096d578cb 42f4a7c2d73ef458394551562239f0d0 { 'aliquot_tag': 'ALQ_adbef1fa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-00380.RNA-Seq.transcriptome.T.hg38 C3N-00380 CCRCC RNA-Seq tumor CPT0021240006 6711aa71-ad63-4539-bd60-2870e152ab98.rna_seq.transcriptome.gdc_realn.bam 10845437572 BAM transcriptome harmonized CPTAC3 046ad9e9-9eb1-4b07-9e0a-85a9e90c9825 f07e787da357abe75196ecba8d6756ce { 'aliquot_tag': 'ALQ_adbef1fa', 'gdc_sample_type': 'Primary Tumor' } C3N-00380.WGS.N C3N-00380 CCRCC WGS blood_normal CPT0021300002 CPT0021300002.WholeGenome.RP-1303.bam 62774576116 BAM aligned CPTAC3 9a341d9e-938c-4226-8064-060b81e95bd2 55c52b71c378391252ba3b9347a5216d { 'aliquot_tag': 'ALQ_940f4086', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00380.WGS.N.hg38 C3N-00380 CCRCC WGS blood_normal CPT0021300002 f6488f85-101a-4703-af6d-d7a024f8294f_gdc_realn.bam 92154085922 BAM harmonized CPTAC3 f87df189-3e47-4980-8511-1ad15b202e5d 79f24a3c132d0eb7f312fe9b77a35893 { 'aliquot_tag': 'ALQ_940f4086', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20454,11 +22222,11 @@ C3N-00382.MethArray.Green.T C3N-00382 CM Methylation Array tumor CPT0022770007 2 C3N-00382.MethArray.Red.T C3N-00382 CM Methylation Array tumor CPT0022770007 202234380050_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 2073ed43-0efa-4579-aa74-b8e23a3ef6d9 cc7950953403de4a7cdc881127c31df1 { 'aliquot_tag': 'ALQ_fc3c3092', 'gdc_sample_type': 'Primary Tumor' } C3N-00382.miRNA-Seq.T C3N-00382 CM miRNA-Seq tumor CPT0022770010 181119_UNC31-K00269_0165_AH27WCBBXY_CATTTT_S11_L004_R1_001.unaln.bam 202135569 BAM unaligned CPTAC3 54fc596d-16d1-439f-9137-c71226e05dde 368cba1a415f1a52e89d92f5cd7ee2c1 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor' } C3N-00382.miRNA-Seq.T.hg38 C3N-00382 CM miRNA-Seq tumor CPT0022770010 788c4e1e-795d-4032-b3d6-b8bf3459f62e_mirnaseq_gdc_realn.bam 214887362 BAM harmonized CPTAC3 420ccb2b-6acb-4983-9314-b5f9a76a21ce fc32bd81dca93d285909f64b12043138 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor' } -C3N-00382.RNA-Seq.chimeric.T.hg38 C3N-00382 CM RNA-Seq tumor CPT0022770010 1a85315a-61c0-4666-b4cd-2cfdc8fdc47d.rna_seq.chimeric.gdc_realn.bam 55083638 BAM chimeric harmonized CPTAC3 98569cef-162b-4512-b734-10519637250a b38ba178595235cb405612ab59bf8c61 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor' } -C3N-00382.RNA-Seq.genomic.T.hg38 C3N-00382 CM RNA-Seq tumor CPT0022770010 1a85315a-61c0-4666-b4cd-2cfdc8fdc47d.rna_seq.genomic.gdc_realn.bam 9842820720 BAM genomic harmonized CPTAC3 7f9c42a0-b3f1-4c45-9d5c-607e8bd60129 ea8a08db78fa257fdb2fc0e8b91b3c92 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor' } -C3N-00382.RNA-Seq.R1_L008.T C3N-00382 CM RNA-Seq tumor CPT0022770010 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L008_R1_001.fastq.gz 3801746517 FASTQ R1_L008 unaligned CPTAC3 6877d968-d129-4072-b29c-d74dfdbda75e 64e9e7d38269f7bcbef24f3640742565 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor' } -C3N-00382.RNA-Seq.R2_L008.T C3N-00382 CM RNA-Seq tumor CPT0022770010 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L008_R2_001.fastq.gz 4208595602 FASTQ R2_L008 unaligned CPTAC3 27207e9a-86e6-48c9-a7ff-16abacc644b5 006bd74560d3e50d52fc615357e36021 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor' } -C3N-00382.RNA-Seq.transcriptome.T.hg38 C3N-00382 CM RNA-Seq tumor CPT0022770010 1a85315a-61c0-4666-b4cd-2cfdc8fdc47d.rna_seq.transcriptome.gdc_realn.bam 8905599320 BAM transcriptome harmonized CPTAC3 d67c81c5-f8ce-41cb-82cc-f2eb882ecc62 078ac2dd217c996608e346fb3994f26a { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor' } +C3N-00382.RNA-Seq.chimeric.T.hg38 C3N-00382 CM RNA-Seq tumor CPT0022770010 e0267a2d-58a7-4583-9399-af5a64a52c06.rna_seq.chimeric.gdc_realn.bam 55070069 BAM chimeric harmonized CPTAC3 2b9c4f19-ce8d-4968-9c8b-dc87c56c5698 347da09fe4c6c9cbe6a9eba1be185143 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor' } +C3N-00382.RNA-Seq.genomic.T.hg38 C3N-00382 CM RNA-Seq tumor CPT0022770010 e0267a2d-58a7-4583-9399-af5a64a52c06.rna_seq.genomic.gdc_realn.bam 9847560736 BAM genomic harmonized CPTAC3 a68c5baf-3efd-4275-839b-e4f6718c5e05 0a2a6982abc4779331dce61b24806821 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor' } +C3N-00382.RNA-Seq.R1_L008.T C3N-00382 CM RNA-Seq tumor CPT0022770010 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L008_R1_001.fastq.gz 3801746517 FASTQ R1_L008 unaligned CPTAC3 6877d968-d129-4072-b29c-d74dfdbda75e 64e9e7d38269f7bcbef24f3640742565 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00382.RNA-Seq.R2_L008.T C3N-00382 CM RNA-Seq tumor CPT0022770010 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTCAA_S5_L008_R2_001.fastq.gz 4208595602 FASTQ R2_L008 unaligned CPTAC3 27207e9a-86e6-48c9-a7ff-16abacc644b5 006bd74560d3e50d52fc615357e36021 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00382.RNA-Seq.transcriptome.T.hg38 C3N-00382 CM RNA-Seq tumor CPT0022770010 e0267a2d-58a7-4583-9399-af5a64a52c06.rna_seq.transcriptome.gdc_realn.bam 10088726479 BAM transcriptome harmonized CPTAC3 acecc579-2bdb-4c24-92d3-ceb65dfaed0f e082995af76ee1fb4d29534c19349547 { 'aliquot_tag': 'ALQ_7b439470', 'gdc_sample_type': 'Primary Tumor' } C3N-00382.WGS.N C3N-00382 CM WGS blood_normal CPT0021860002 CPT0021860002.WholeGenome.RP-1303.bam 56486268145 BAM aligned CPTAC3 17ee5c32-3c5d-4f1f-8831-e69200843d6f ec7ae42fe7770d496263daf62b018a2b { 'aliquot_tag': 'ALQ_718845e5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00382.WGS.N.hg38 C3N-00382 CM WGS blood_normal CPT0021860002 3853a6ce-59fd-4379-b185-471e6499ec80_wgs_gdc_realn.bam 84361680382 BAM harmonized CPTAC3 b1064b1b-ac40-492b-9375-7f34c43ea361 75b52979008efc2967c6b9ef160a3b71 { 'aliquot_tag': 'ALQ_718845e5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00382.WGS.T C3N-00382 CM WGS tumor CPT0022770007 CPT0022770007.WholeGenome.RP-1303.bam 64553690002 BAM aligned CPTAC3 78bd3e0d-bae2-496a-a32d-8c395d994cd2 6a797f1701a85a2f0edb55eeb904ee88 { 'aliquot_tag': 'ALQ_fc3c3092', 'gdc_sample_type': 'Primary Tumor' } @@ -20475,12 +22243,12 @@ C3N-00383.miRNA-Seq.T C3N-00383 UCEC miRNA-Seq tumor CPT0022830009 180924_UNC31- C3N-00383.miRNA-Seq.T.hg38 C3N-00383 UCEC miRNA-Seq tumor CPT0022830009 42d22828-b066-4298-8ba9-2a154bc84418_mirnaseq_gdc_realn.bam 206703975 BAM harmonized CPTAC3 c6f597f5-ebdd-48d4-8dd4-f782a54b796e c08dc91289acf998b314f9d4ae13acac { 'aliquot_tag': 'ALQ_1f520980', 'gdc_sample_type': 'Primary Tumor' } C3N-00383.RNA-Seq.chimeric.A.hg38 C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 0b36e36e-9a74-4364-b77a-e7cc59853879.rna_seq.chimeric.gdc_realn.bam 111866115 BAM chimeric harmonized CPTAC3 b411216b-a014-4873-8cff-a0d83133ac83 53d2e769f310113dea18b3925631f760 { 'aliquot_tag': 'ALQ_ade1b1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00383.RNA-Seq.chimeric.T.hg38 C3N-00383 UCEC RNA-Seq tumor CPT0022830009 a8d36973-452c-443e-9329-c4b80a6f3edc.rna_seq.chimeric.gdc_realn.bam 57641972 BAM chimeric harmonized CPTAC3 2a978c3f-c63c-4b50-9cb3-b68c7585da43 590c55218e499f150521f51593712631 { 'aliquot_tag': 'ALQ_1f520980', 'gdc_sample_type': 'Primary Tumor' } -C3N-00383.RNA-Seq.genomic.A.hg38 C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 0b36e36e-9a74-4364-b77a-e7cc59853879.rna_seq.genomic.gdc_realn.bam 8217380016 BAM genomic harmonized CPTAC3 0e5c11b0-35fc-496a-b728-c825aef49e6a c59d07e0a170045065da60ac7f4cf017 { 'aliquot_tag': 'ALQ_ade1b1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00383.RNA-Seq.genomic.A.hg38 C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 0b36e36e-9a74-4364-b77a-e7cc59853879.rna_seq.genomic.gdc_realn.bam 8217380016 BAM genomic harmonized CPTAC3 90d94d78-1aad-4978-b664-ef1cfe307b9f c59d07e0a170045065da60ac7f4cf017 { 'aliquot_tag': 'ALQ_ade1b1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00383.RNA-Seq.genomic.T.hg38 C3N-00383 UCEC RNA-Seq tumor CPT0022830009 a8d36973-452c-443e-9329-c4b80a6f3edc.rna_seq.genomic.gdc_realn.bam 6815548328 BAM genomic harmonized CPTAC3 5a1519d6-7d29-4c03-9219-c07c676437d4 d6713acd8712e022af385ecbd0eca83a { 'aliquot_tag': 'ALQ_1f520980', 'gdc_sample_type': 'Primary Tumor' } -C3N-00383.RNA-Seq.R1_L002.T C3N-00383 UCEC RNA-Seq tumor CPT0022830009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L002_R1_001.fastq.gz 3168013952 FASTQ R1_L002 unaligned CPTAC3 d8669320-5d71-4398-b65c-26c820c08fbf 640ce4b62d8a96c140dd9233707d8f93 { 'aliquot_tag': 'ALQ_1f520980', 'gdc_sample_type': 'Primary Tumor' } -C3N-00383.RNA-Seq.R1_L008.A C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTCAA_S42_L008_R1_001.fastq.gz 3716076424 FASTQ R1_L008 unaligned CPTAC3 d8fdcaab-a8eb-452b-85d3-4e8342a5aa06 f04592afe1a5d37cba0a4a5ee3b5c91f { 'aliquot_tag': 'ALQ_ade1b1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00383.RNA-Seq.R2_L002.T C3N-00383 UCEC RNA-Seq tumor CPT0022830009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L002_R2_001.fastq.gz 3425858263 FASTQ R2_L002 unaligned CPTAC3 d98e6375-44c4-45d8-a771-293f086bc52b bd6ad7d75892312f2db62078c1826995 { 'aliquot_tag': 'ALQ_1f520980', 'gdc_sample_type': 'Primary Tumor' } -C3N-00383.RNA-Seq.R2_L008.A C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTCAA_S42_L008_R2_001.fastq.gz 4055967722 FASTQ R2_L008 unaligned CPTAC3 edbf898c-dc38-48e4-b61b-09f11115d61e b389436034bbb927751c127883759987 { 'aliquot_tag': 'ALQ_ade1b1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00383.RNA-Seq.R1_L002.T C3N-00383 UCEC RNA-Seq tumor CPT0022830009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L002_R1_001.fastq.gz 3168013952 FASTQ R1_L002 unaligned CPTAC3 d8669320-5d71-4398-b65c-26c820c08fbf 640ce4b62d8a96c140dd9233707d8f93 { 'aliquot_tag': 'ALQ_1f520980', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00383.RNA-Seq.R1_L008.A C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTCAA_S42_L008_R1_001.fastq.gz 3716076424 FASTQ R1_L008 unaligned CPTAC3 d8fdcaab-a8eb-452b-85d3-4e8342a5aa06 f04592afe1a5d37cba0a4a5ee3b5c91f { 'aliquot_tag': 'ALQ_ade1b1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00383.RNA-Seq.R2_L002.T C3N-00383 UCEC RNA-Seq tumor CPT0022830009 170823_UNC31-K00269_0075_AHLCW5BBXX_GATCAG_S8_L002_R2_001.fastq.gz 3425858263 FASTQ R2_L002 unaligned CPTAC3 d98e6375-44c4-45d8-a771-293f086bc52b bd6ad7d75892312f2db62078c1826995 { 'aliquot_tag': 'ALQ_1f520980', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-00383.RNA-Seq.R2_L008.A C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 180313_UNC32-K00270_0085_BHT2MGBBXX_AGTCAA_S42_L008_R2_001.fastq.gz 4055967722 FASTQ R2_L008 unaligned CPTAC3 edbf898c-dc38-48e4-b61b-09f11115d61e b389436034bbb927751c127883759987 { 'aliquot_tag': 'ALQ_ade1b1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00383.RNA-Seq.transcriptome.A.hg38 C3N-00383 UCEC RNA-Seq tissue_normal CPT0022850006 0b36e36e-9a74-4364-b77a-e7cc59853879.rna_seq.transcriptome.gdc_realn.bam 9017619176 BAM transcriptome harmonized CPTAC3 e3e06a72-21ea-421b-8e49-37d63c32e2be cc466bae2ed9869a4028b4b431db6a0a { 'aliquot_tag': 'ALQ_ade1b1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00383.RNA-Seq.transcriptome.T.hg38 C3N-00383 UCEC RNA-Seq tumor CPT0022830009 a8d36973-452c-443e-9329-c4b80a6f3edc.rna_seq.transcriptome.gdc_realn.bam 7223624337 BAM transcriptome harmonized CPTAC3 646ad651-187d-402e-aa19-3f4d2e13b58f fd74211fa8347ad597dce0193aa7b27a { 'aliquot_tag': 'ALQ_1f520980', 'gdc_sample_type': 'Primary Tumor' } C3N-00383.WGS.A C3N-00383 UCEC WGS tissue_normal CPT0022850009 CPT0022850009.WholeGenome.RP-1303.bam 59719519301 BAM aligned CPTAC3 e3c6974b-17c8-4a48-b938-b3a5e1eaab44 7727bf11e37e5fef758177e40898d7c0 { 'aliquot_tag': 'ALQ_9012fc20', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20501,16 +22269,16 @@ C3N-00384.miRNA-Seq.A C3N-00384 CM miRNA-Seq tissue_normal CPT0022410005 181119_ C3N-00384.miRNA-Seq.A.hg38 C3N-00384 CM miRNA-Seq tissue_normal CPT0022410005 745103a1-e939-4652-93b4-b27be15a9ca6_mirnaseq_gdc_realn.bam 183259475 BAM harmonized CPTAC3 00469fb7-73a6-4c1b-ac8d-bad3d22f5abe f0940076f1cb6ec6791fca4c868b5165 { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00384.miRNA-Seq.T C3N-00384 CM miRNA-Seq tumor CPT0022390012 181113_UNC31-K00269_0164_AH23NNBBXY_GTTTCG_S45_L004_R1_001.unaln.bam 163177530 BAM unaligned CPTAC3 e2c98261-8957-4a0d-a20a-931bfdec8118 6067189061107224fe8e622775098531 { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor' } C3N-00384.miRNA-Seq.T.hg38 C3N-00384 CM miRNA-Seq tumor CPT0022390012 8fafae95-7f52-49c2-a667-06755375e4bf_mirnaseq_gdc_realn.bam 168336328 BAM harmonized CPTAC3 f66fc7f0-e495-41e0-a04e-5ab1e5962986 c3cc9d1d02a5f82cb3510bd4d0399cfe { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00384.RNA-Seq.chimeric.A.hg38 C3N-00384 CM RNA-Seq tissue_normal CPT0022410005 fd0f92f7-41bc-4f14-bc27-f802d4a79529.rna_seq.chimeric.gdc_realn.bam 45354899 BAM chimeric harmonized CPTAC3 d77dcc51-7103-441c-b421-336871fd8e85 dfa61d97736b805f9ce4d6f0b28d193f { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00384.RNA-Seq.chimeric.T.hg38 C3N-00384 CM RNA-Seq tumor CPT0022390012 6506b1cd-72a3-49ae-adb0-597f520fc874.rna_seq.chimeric.gdc_realn.bam 44313691 BAM chimeric harmonized CPTAC3 9b691f21-4356-48a2-9d00-0e63a2260488 403d1176c9378d5bd56258d7a426b31d { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00384.RNA-Seq.genomic.A.hg38 C3N-00384 CM RNA-Seq tissue_normal CPT0022410005 fd0f92f7-41bc-4f14-bc27-f802d4a79529.rna_seq.genomic.gdc_realn.bam 8254378634 BAM genomic harmonized CPTAC3 67132869-d8bb-4313-b07f-4e6e2e8fdc51 f50b4a3902211d37a9cd6358474a334c { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00384.RNA-Seq.genomic.T.hg38 C3N-00384 CM RNA-Seq tumor CPT0022390012 6506b1cd-72a3-49ae-adb0-597f520fc874.rna_seq.genomic.gdc_realn.bam 10481464122 BAM genomic harmonized CPTAC3 4192517c-775d-4139-a874-bb2decb32ce3 04ab455b96e034ae5401c7db9f6505dd { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00384.RNA-Seq.R1_L007.T C3N-00384 CM RNA-Seq tumor CPT0022390012 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L007_R1_001.fastq.gz 4137180038 FASTQ R1_L007 unaligned CPTAC3 69fb3a72-5e56-48c9-af16-29674c8932a0 0ed219a7cb6bdbeececbe0f34d585a0d { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00384.RNA-Seq.R1_L008.A C3N-00384 CM RNA-Seq tissue_normal CPT0022410005 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3844066253 FASTQ R1_L008 unaligned CPTAC3 72d7adcf-9a3f-4996-b438-67c4d27ec1bd 2a868d23894ff198919046f56dc95c1d { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00384.RNA-Seq.R2_L007.T C3N-00384 CM RNA-Seq tumor CPT0022390012 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L007_R2_001.fastq.gz 4470455098 FASTQ R2_L007 unaligned CPTAC3 f3f13bbf-fddf-4c74-999a-35d0cb629db4 2ab44e960f59c258bbf794e8f864e4b6 { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00384.RNA-Seq.R2_L008.A C3N-00384 CM RNA-Seq tissue_normal CPT0022410005 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4229067633 FASTQ R2_L008 unaligned CPTAC3 301e2007-d907-4eaf-a17f-39ed110ea0f7 60cccb58f751ffb6be6eb2928a083e3b { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00384.RNA-Seq.transcriptome.A.hg38 C3N-00384 CM RNA-Seq tissue_normal CPT0022410005 fd0f92f7-41bc-4f14-bc27-f802d4a79529.rna_seq.transcriptome.gdc_realn.bam 8650527688 BAM transcriptome harmonized CPTAC3 f884dc1d-20a9-4965-8af7-a72b63bb4a84 aa73880eb9d9416dd0491cb743806acf { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00384.RNA-Seq.transcriptome.T.hg38 C3N-00384 CM RNA-Seq tumor CPT0022390012 6506b1cd-72a3-49ae-adb0-597f520fc874.rna_seq.transcriptome.gdc_realn.bam 8530045488 BAM transcriptome harmonized CPTAC3 d118b49d-5e03-4a9d-8d62-0cf02aef8fb8 101f0710b42f56358ce8380f4fa1129c { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00384.RNA-Seq.chimeric.A.hg38 C3N-00384 CM RNA-Seq tissue_normal CPT0022410005 aef8b640-749f-4bd6-b013-5a084e751de5.rna_seq.chimeric.gdc_realn.bam 45339362 BAM chimeric harmonized CPTAC3 5b2e589c-66f2-474e-bab9-d28d25e92676 a333c9bedc2bb6244778a2764d91677e { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00384.RNA-Seq.chimeric.T.hg38 C3N-00384 CM RNA-Seq tumor CPT0022390012 e4543772-f48f-4f79-aa84-763f2988da67.rna_seq.chimeric.gdc_realn.bam 44303375 BAM chimeric harmonized CPTAC3 d5a05ef6-277a-40ec-b340-3d8c8d58d00f b7cdd3c37a39cd060483bedf4c2864b5 { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00384.RNA-Seq.genomic.A.hg38 C3N-00384 CM RNA-Seq tissue_normal CPT0022410005 aef8b640-749f-4bd6-b013-5a084e751de5.rna_seq.genomic.gdc_realn.bam 8255316232 BAM genomic harmonized CPTAC3 98dd728d-6566-4b51-aecf-8ce9684aed1d 24a996723efcda32822608cd412a69ce { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00384.RNA-Seq.genomic.T.hg38 C3N-00384 CM RNA-Seq tumor CPT0022390012 e4543772-f48f-4f79-aa84-763f2988da67.rna_seq.genomic.gdc_realn.bam 10483884602 BAM genomic harmonized CPTAC3 f788ba55-f605-4fb4-9ea4-ca0cef2992c9 4a6818cdfea5a07768d15192f55c84e1 { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00384.RNA-Seq.R1_L007.T C3N-00384 CM RNA-Seq tumor CPT0022390012 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L007_R1_001.fastq.gz 4137180038 FASTQ R1_L007 unaligned CPTAC3 69fb3a72-5e56-48c9-af16-29674c8932a0 0ed219a7cb6bdbeececbe0f34d585a0d { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00384.RNA-Seq.R1_L008.A C3N-00384 CM RNA-Seq tissue_normal CPT0022410005 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3844066253 FASTQ R1_L008 unaligned CPTAC3 72d7adcf-9a3f-4996-b438-67c4d27ec1bd 2a868d23894ff198919046f56dc95c1d { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00384.RNA-Seq.R2_L007.T C3N-00384 CM RNA-Seq tumor CPT0022390012 170823_UNC31-K00269_0075_AHLCW5BBXX_TAGCTT_S7_L007_R2_001.fastq.gz 4470455098 FASTQ R2_L007 unaligned CPTAC3 f3f13bbf-fddf-4c74-999a-35d0cb629db4 2ab44e960f59c258bbf794e8f864e4b6 { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-00384.RNA-Seq.R2_L008.A C3N-00384 CM RNA-Seq tissue_normal CPT0022410005 180516_UNC32-K00270_0095_AHTY5LBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4229067633 FASTQ R2_L008 unaligned CPTAC3 301e2007-d907-4eaf-a17f-39ed110ea0f7 60cccb58f751ffb6be6eb2928a083e3b { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00384.RNA-Seq.transcriptome.A.hg38 C3N-00384 CM RNA-Seq tissue_normal CPT0022410005 aef8b640-749f-4bd6-b013-5a084e751de5.rna_seq.transcriptome.gdc_realn.bam 9845494185 BAM transcriptome harmonized CPTAC3 09b9d229-a357-4bc8-a45b-1bfd1b24ce91 dc40e21d3db06b042ef16d992910cccd { 'aliquot_tag': 'ALQ_1be6d6b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00384.RNA-Seq.transcriptome.T.hg38 C3N-00384 CM RNA-Seq tumor CPT0022390012 e4543772-f48f-4f79-aa84-763f2988da67.rna_seq.transcriptome.gdc_realn.bam 9496608309 BAM transcriptome harmonized CPTAC3 1d0a1fc8-bcfb-4f72-82b4-0f7044f43659 88e0f89496e792951fec98b5587c57bd { 'aliquot_tag': 'ALQ_b1ec092b', 'gdc_sample_type': 'Primary Tumor' } C3N-00384.WGS.A C3N-00384 CM WGS tissue_normal CPT0022410008 CPT0022410008.WholeGenome.RP-1303.bam 58699716186 BAM aligned CPTAC3 ca66ec34-98f7-4a0c-9fc9-433ac33b7572 f4de3bfa4f1e92e6c39be995bff4619f { 'aliquot_tag': 'ALQ_6557aa0d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00384.WGS.A.hg38 C3N-00384 CM WGS tissue_normal CPT0022410008 4484bfa4-856a-412f-a45f-27c66d2342d2_wgs_gdc_realn.bam 84555828087 BAM harmonized CPTAC3 63d46a60-3424-4946-93b6-a197adddbecc 5e5694a2264ab4ce1067e2c906694788 { 'aliquot_tag': 'ALQ_6557aa0d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00384.WGS.N C3N-00384 CM WGS blood_normal CPT0022420002 CPT0022420002.WholeGenome.RP-1303.bam 70838023693 BAM aligned CPTAC3 e196969c-6949-41c9-91e3-1c61e3fceadd 369c81db408f604d472bd180b85ccad9 { 'aliquot_tag': 'ALQ_c22239c3', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20527,11 +22295,11 @@ C3N-00385.MethArray.Green.T C3N-00385 CM Methylation Array tumor CPT0015930006 2 C3N-00385.MethArray.Red.T C3N-00385 CM Methylation Array tumor CPT0015930006 202234380058_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 1d6a5bee-5d48-47a2-933b-3394892b72f6 c2649a373b7d5b0874ba64974746e1e8 { 'aliquot_tag': 'ALQ_f99fed9', 'gdc_sample_type': 'Primary Tumor' } C3N-00385.miRNA-Seq.T C3N-00385 CM miRNA-Seq tumor CPT0015930009 190828_UNC32-K00270_0200_BH7GVJBBXY_CAGGCG_S170_L008_R1_001.unaln.bam 208731355 BAM unaligned CPTAC3 340598d4-fcde-4099-b7db-07c5db4d45dd b9538114aadad8001c7cb370c918300b { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor' } C3N-00385.miRNA-Seq.T.hg38 C3N-00385 CM miRNA-Seq tumor CPT0015930009 a248b5ac-5c01-402f-b3d2-3646278bfbeb_mirnaseq_gdc_realn.bam 222669197 BAM harmonized CPTAC3 0b6514ed-b52d-4761-aaaa-132d64ae83d5 cb1a3d34952a2b3b27ed3483807c86c6 { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor' } -C3N-00385.RNA-Seq.chimeric.T.hg38 C3N-00385 CM RNA-Seq tumor CPT0015930009 3da666c6-f92a-42a9-b92b-648bdf9da09d.rna_seq.chimeric.gdc_realn.bam 154303755 BAM chimeric harmonized CPTAC3 cd608811-6409-439d-a23e-f74cd64c907f eb306849c37faa7e6e819606df12b594 { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor' } -C3N-00385.RNA-Seq.genomic.T.hg38 C3N-00385 CM RNA-Seq tumor CPT0015930009 3da666c6-f92a-42a9-b92b-648bdf9da09d.rna_seq.genomic.gdc_realn.bam 8981913238 BAM genomic harmonized CPTAC3 12f31ac2-8c87-4ddf-8bb1-b855ada7d3d2 2b6e8d70b376c38b2b15bf5f3c14b29a { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor' } -C3N-00385.RNA-Seq.R1_L001.T C3N-00385 CM RNA-Seq tumor CPT0015930009 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L001_R1_001.fastq.gz 3783152303 FASTQ R1_L001 unaligned CPTAC3 7fd19c62-cc82-4870-b912-d28cea4f7705 9b43bb746fa5544bff9b38ca2a5f4e60 { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor' } -C3N-00385.RNA-Seq.R2_L001.T C3N-00385 CM RNA-Seq tumor CPT0015930009 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4414012529 FASTQ R2_L001 unaligned CPTAC3 1c156111-ded4-4f5f-8927-04e88822424a f03a8291172c3b0aa6a0860bf533e7c0 { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor' } -C3N-00385.RNA-Seq.transcriptome.T.hg38 C3N-00385 CM RNA-Seq tumor CPT0015930009 3da666c6-f92a-42a9-b92b-648bdf9da09d.rna_seq.transcriptome.gdc_realn.bam 8649876202 BAM transcriptome harmonized CPTAC3 78c7ee45-b2eb-436a-a9a8-0fc27843f512 bc96df67dc987cfce45a23e8488bab68 { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor' } +C3N-00385.RNA-Seq.chimeric.T.hg38 C3N-00385 CM RNA-Seq tumor CPT0015930009 bc33b075-01d4-4254-a9a2-f6a10b275d94.rna_seq.chimeric.gdc_realn.bam 154276436 BAM chimeric harmonized CPTAC3 fbd2aea0-dcc7-41eb-bcaf-6c6a9ff19674 bb7faf1d28a5f95bb508582ff160d0c8 { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor' } +C3N-00385.RNA-Seq.genomic.T.hg38 C3N-00385 CM RNA-Seq tumor CPT0015930009 bc33b075-01d4-4254-a9a2-f6a10b275d94.rna_seq.genomic.gdc_realn.bam 8982847463 BAM genomic harmonized CPTAC3 e9795f0c-74c6-455f-b327-42c9ac4a7a49 5d6a7b2273fb1c1ea0021069b032b0cf { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor' } +C3N-00385.RNA-Seq.R1_L001.T C3N-00385 CM RNA-Seq tumor CPT0015930009 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L001_R1_001.fastq.gz 3783152303 FASTQ R1_L001 unaligned CPTAC3 7fd19c62-cc82-4870-b912-d28cea4f7705 9b43bb746fa5544bff9b38ca2a5f4e60 { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00385.RNA-Seq.R2_L001.T C3N-00385 CM RNA-Seq tumor CPT0015930009 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4414012529 FASTQ R2_L001 unaligned CPTAC3 1c156111-ded4-4f5f-8927-04e88822424a f03a8291172c3b0aa6a0860bf533e7c0 { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00385.RNA-Seq.transcriptome.T.hg38 C3N-00385 CM RNA-Seq tumor CPT0015930009 bc33b075-01d4-4254-a9a2-f6a10b275d94.rna_seq.transcriptome.gdc_realn.bam 9903757191 BAM transcriptome harmonized CPTAC3 6c82def9-5561-4046-8446-880e5108b2eb 5bdf1e0bbd8fce1d0b9c7db041ffbb42 { 'aliquot_tag': 'ALQ_9f26e348', 'gdc_sample_type': 'Primary Tumor' } C3N-00385.WGS.N C3N-00385 CM WGS blood_normal CPT0016120002 CPT0016120002.WholeGenome.RP-1303.bam 54542079715 BAM aligned CPTAC3 ea5166fe-f2cc-4137-bfcd-ce45b9032d60 598e5ec7c29e0d59ecf6e175208d1e2c { 'aliquot_tag': 'ALQ_e82f8b80', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00385.WGS.N.hg38 C3N-00385 CM WGS blood_normal CPT0016120002 ece04aa7-937d-499b-808c-edb69141f329_wgs_gdc_realn.bam 80497625188 BAM harmonized CPTAC3 6764a632-a57d-419e-ade4-901a9d5f82a4 f519e49afd154c51dd10d5a0b7edfd0a { 'aliquot_tag': 'ALQ_e82f8b80', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00385.WGS.T C3N-00385 CM WGS tumor CPT0015930006 CPT0015930006.WholeGenome.RP-1303.bam 59601782306 BAM aligned CPTAC3 e15f9467-c1b8-4f04-9c1c-9f42b53b9643 554c1af88a7ca9ca48fa90f7b610695b { 'aliquot_tag': 'ALQ_f99fed9', 'gdc_sample_type': 'Primary Tumor' } @@ -20545,9 +22313,9 @@ C3N-00386.MethArray.Red.T C3N-00386 UCEC Methylation Array tumor CPT0016220009 2 C3N-00386.miRNA-Seq.T C3N-00386 UCEC miRNA-Seq tumor CPT0016220006 180924_UNC31-K00269_0154_AHWTMLBBXX_CCAACA_S36_L002_R1_001.unaln.bam 218294257 BAM unaligned CPTAC3 32d3e699-265c-46f2-b0bb-866b12fb19fa ff1028b96b2da0d69a119da4f8f91670 { 'aliquot_tag': 'ALQ_69d63d37', 'gdc_sample_type': 'Primary Tumor' } C3N-00386.miRNA-Seq.T.hg38 C3N-00386 UCEC miRNA-Seq tumor CPT0016220006 64271378-dce8-4c93-b606-3b7ffdc6cb5c_mirnaseq_gdc_realn.bam 235631699 BAM harmonized CPTAC3 5966008f-f222-49bb-92a0-91d140379001 0eb5d05fa5545ee94a96258efcae0419 { 'aliquot_tag': 'ALQ_69d63d37', 'gdc_sample_type': 'Primary Tumor' } C3N-00386.RNA-Seq.chimeric.T.hg38 C3N-00386 UCEC RNA-Seq tumor CPT0016220006 40540422-c580-45b1-8549-4444761059f5.rna_seq.chimeric.gdc_realn.bam 41483803 BAM chimeric harmonized CPTAC3 23bb16a1-9db1-47b9-8812-c2511b0ff287 b668969d1444de2dc55207fd9dc96386 { 'aliquot_tag': 'ALQ_69d63d37', 'gdc_sample_type': 'Primary Tumor' } -C3N-00386.RNA-Seq.genomic.T.hg38 C3N-00386 UCEC RNA-Seq tumor CPT0016220006 40540422-c580-45b1-8549-4444761059f5.rna_seq.genomic.gdc_realn.bam 5847848047 BAM genomic harmonized CPTAC3 7e917b7b-9fff-423f-842b-60e4a79f3984 2c895d2c2d2bfbc1665024723baadaec { 'aliquot_tag': 'ALQ_69d63d37', 'gdc_sample_type': 'Primary Tumor' } -C3N-00386.RNA-Seq.R1_L001.T C3N-00386 UCEC RNA-Seq tumor CPT0016220006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATCACG_S4_L001_R1_001.fastq.gz 2686505667 FASTQ R1_L001 unaligned CPTAC3 68aa44a5-d2a6-4ba3-ba6c-0650d6f945f4 b8f32b50ebf35df55f34a025fc1d2a20 { 'aliquot_tag': 'ALQ_69d63d37', 'gdc_sample_type': 'Primary Tumor' } -C3N-00386.RNA-Seq.R2_L001.T C3N-00386 UCEC RNA-Seq tumor CPT0016220006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATCACG_S4_L001_R2_001.fastq.gz 2747222980 FASTQ R2_L001 unaligned CPTAC3 c5af6b28-5fc3-4a17-bb93-bceb731d1f80 0031607e0c25c1f8c03d1454532754e2 { 'aliquot_tag': 'ALQ_69d63d37', 'gdc_sample_type': 'Primary Tumor' } +C3N-00386.RNA-Seq.genomic.T.hg38 C3N-00386 UCEC RNA-Seq tumor CPT0016220006 40540422-c580-45b1-8549-4444761059f5.rna_seq.genomic.gdc_realn.bam 5847848047 BAM genomic harmonized CPTAC3 793b4e2e-f176-4efe-bf34-319e9cae6c84 2c895d2c2d2bfbc1665024723baadaec { 'aliquot_tag': 'ALQ_69d63d37', 'gdc_sample_type': 'Primary Tumor' } +C3N-00386.RNA-Seq.R1_L001.T C3N-00386 UCEC RNA-Seq tumor CPT0016220006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATCACG_S4_L001_R1_001.fastq.gz 2686505667 FASTQ R1_L001 unaligned CPTAC3 68aa44a5-d2a6-4ba3-ba6c-0650d6f945f4 b8f32b50ebf35df55f34a025fc1d2a20 { 'aliquot_tag': 'ALQ_69d63d37', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00386.RNA-Seq.R2_L001.T C3N-00386 UCEC RNA-Seq tumor CPT0016220006 170823_UNC31-K00269_0076_BHLCTFBBXX_ATCACG_S4_L001_R2_001.fastq.gz 2747222980 FASTQ R2_L001 unaligned CPTAC3 c5af6b28-5fc3-4a17-bb93-bceb731d1f80 0031607e0c25c1f8c03d1454532754e2 { 'aliquot_tag': 'ALQ_69d63d37', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-00386.RNA-Seq.transcriptome.T.hg38 C3N-00386 UCEC RNA-Seq tumor CPT0016220006 40540422-c580-45b1-8549-4444761059f5.rna_seq.transcriptome.gdc_realn.bam 6074119516 BAM transcriptome harmonized CPTAC3 7bcee864-4694-405c-933f-29bedb30fffb c4f7f67e3a677c9d809feccdc7851263 { 'aliquot_tag': 'ALQ_69d63d37', 'gdc_sample_type': 'Primary Tumor' } C3N-00386.WGS.N C3N-00386 UCEC WGS blood_normal CPT0016770002 CPT0016770002.WholeGenome.RP-1303.bam 56469368040 BAM aligned CPTAC3 68dfedf0-0150-4931-bf69-ad8920bc7fdb 3a81962d00cbd0fafe0ec2f20034889f { 'aliquot_tag': 'ALQ_f696e7ed', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00386.WGS.N.hg38 C3N-00386 UCEC WGS blood_normal CPT0016770002 d2d78e06-7a68-485f-a67e-256986fb3006_gdc_realn.bam 81833215150 BAM harmonized CPTAC3 061f7b00-6f79-4554-b725-5778501dbccb db5a948f3f9d69bb35f7941968ffde25 { 'aliquot_tag': 'ALQ_f696e7ed', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20562,9 +22330,9 @@ C3N-00388.MethArray.Red.T C3N-00388 UCEC Methylation Array tumor CPT0016940008 2 C3N-00388.miRNA-Seq.T C3N-00388 UCEC miRNA-Seq tumor CPT0016940006 180924_UNC31-K00269_0154_AHWTMLBBXX_ATCACG_S1_L002_R1_001.unaln.bam 264446813 BAM unaligned CPTAC3 5a71c55a-56ce-47fa-b6da-98f0309d164a 10a8a359f54b7bc6589be2c8de32ef81 { 'aliquot_tag': 'ALQ_8c513854', 'gdc_sample_type': 'Primary Tumor' } C3N-00388.miRNA-Seq.T.hg38 C3N-00388 UCEC miRNA-Seq tumor CPT0016940006 8613bd11-1c1d-4b9c-ac3f-2a37296b0b07_mirnaseq_gdc_realn.bam 296389228 BAM harmonized CPTAC3 53a1d687-11dc-4b2b-b608-288b23a155a4 b06a26971d515e5bfccdda8cbb33a640 { 'aliquot_tag': 'ALQ_8c513854', 'gdc_sample_type': 'Primary Tumor' } C3N-00388.RNA-Seq.chimeric.T.hg38 C3N-00388 UCEC RNA-Seq tumor CPT0016940006 f3d73e1b-d554-4f30-9c83-ce8aeec4ec44.rna_seq.chimeric.gdc_realn.bam 38488478 BAM chimeric harmonized CPTAC3 5fda7969-2240-46db-b918-f0f2c5bed301 39eddfeeda7c24ca11fe9cfc35dbec65 { 'aliquot_tag': 'ALQ_8c513854', 'gdc_sample_type': 'Primary Tumor' } -C3N-00388.RNA-Seq.genomic.T.hg38 C3N-00388 UCEC RNA-Seq tumor CPT0016940006 f3d73e1b-d554-4f30-9c83-ce8aeec4ec44.rna_seq.genomic.gdc_realn.bam 5681853214 BAM genomic harmonized CPTAC3 b8a4687c-b4b7-41b4-8bbf-7c9bbf1f8c32 fd60a20f804999be636aebae1d6ab955 { 'aliquot_tag': 'ALQ_8c513854', 'gdc_sample_type': 'Primary Tumor' } -C3N-00388.RNA-Seq.R1_L005.T C3N-00388 UCEC RNA-Seq tumor CPT0016940006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 2819089574 FASTQ R1_L005 unaligned CPTAC3 c6980525-d030-4169-9393-0f1f73fe04a8 10e18b1dabc2e350e6173aa96e10fa8f { 'aliquot_tag': 'ALQ_8c513854', 'gdc_sample_type': 'Primary Tumor' } -C3N-00388.RNA-Seq.R2_L005.T C3N-00388 UCEC RNA-Seq tumor CPT0016940006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 3037163909 FASTQ R2_L005 unaligned CPTAC3 a989c255-f970-475b-bd15-7b7103241d2a 5d52268f180cd5bc7d5e936924c885dc { 'aliquot_tag': 'ALQ_8c513854', 'gdc_sample_type': 'Primary Tumor' } +C3N-00388.RNA-Seq.genomic.T.hg38 C3N-00388 UCEC RNA-Seq tumor CPT0016940006 f3d73e1b-d554-4f30-9c83-ce8aeec4ec44.rna_seq.genomic.gdc_realn.bam 5681853214 BAM genomic harmonized CPTAC3 fff23231-81eb-4fb5-86dc-57b6ede8b801 fd60a20f804999be636aebae1d6ab955 { 'aliquot_tag': 'ALQ_8c513854', 'gdc_sample_type': 'Primary Tumor' } +C3N-00388.RNA-Seq.R1_L005.T C3N-00388 UCEC RNA-Seq tumor CPT0016940006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 2819089574 FASTQ R1_L005 unaligned CPTAC3 c6980525-d030-4169-9393-0f1f73fe04a8 10e18b1dabc2e350e6173aa96e10fa8f { 'aliquot_tag': 'ALQ_8c513854', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00388.RNA-Seq.R2_L005.T C3N-00388 UCEC RNA-Seq tumor CPT0016940006 170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 3037163909 FASTQ R2_L005 unaligned CPTAC3 a989c255-f970-475b-bd15-7b7103241d2a 5d52268f180cd5bc7d5e936924c885dc { 'aliquot_tag': 'ALQ_8c513854', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00388.RNA-Seq.transcriptome.T.hg38 C3N-00388 UCEC RNA-Seq tumor CPT0016940006 f3d73e1b-d554-4f30-9c83-ce8aeec4ec44.rna_seq.transcriptome.gdc_realn.bam 8936885251 BAM transcriptome harmonized CPTAC3 96b87054-9cfd-42ed-abf0-414883292a7e e97aaae11b65fb0c1b1c72148a576ddd { 'aliquot_tag': 'ALQ_8c513854', 'gdc_sample_type': 'Primary Tumor' } C3N-00388.WGS.N C3N-00388 UCEC WGS blood_normal CPT0017290002 CPT0017290002.WholeGenome.RP-1303.bam 59493957946 BAM aligned CPTAC3 a3aed375-8bfc-4899-8374-78d99f88c99c e6f0bf1f4e6fd66238bf234672a92f1c { 'aliquot_tag': 'ALQ_bf1cc38b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00388.WGS.N.hg38 C3N-00388 UCEC WGS blood_normal CPT0017290002 24dbe8dc-e176-464f-94a0-006aa43bee59_gdc_realn.bam 84661633197 BAM harmonized CPTAC3 ab9ad1e1-c9a1-44a9-b7af-d741d562a6c5 f2042da56c1029ae4c851aeead79ba0f { 'aliquot_tag': 'ALQ_bf1cc38b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20580,8 +22348,8 @@ C3N-00389.miRNA-Seq.T C3N-00389 UCEC miRNA-Seq tumor CPT0026270006 180924_UNC31- C3N-00389.miRNA-Seq.T.hg38 C3N-00389 UCEC miRNA-Seq tumor CPT0026270006 49106ac7-b595-409e-8731-343873ff382b_mirnaseq_gdc_realn.bam 358128221 BAM harmonized CPTAC3 1b7e6fb0-ef9a-46f2-b59a-35986b9efaf4 b104e482d7733fc76f2b9e8807dd1a2f { 'aliquot_tag': 'ALQ_2fb9b5a4', 'gdc_sample_type': 'Primary Tumor' } C3N-00389.RNA-Seq.chimeric.T.hg38 C3N-00389 UCEC RNA-Seq tumor CPT0026270006 60adb9ee-7a51-41f7-9e9d-14d42ad5ce40.rna_seq.chimeric.gdc_realn.bam 41915284 BAM chimeric harmonized CPTAC3 cd413291-21d0-4e5b-9afb-1907f2553318 08dc3d7862aa0b50a201800ffc2c2c8e { 'aliquot_tag': 'ALQ_2fb9b5a4', 'gdc_sample_type': 'Primary Tumor' } C3N-00389.RNA-Seq.genomic.T.hg38 C3N-00389 UCEC RNA-Seq tumor CPT0026270006 60adb9ee-7a51-41f7-9e9d-14d42ad5ce40.rna_seq.genomic.gdc_realn.bam 9239958041 BAM genomic harmonized CPTAC3 4fb4f112-7720-4eeb-b71b-01054a51542d 42764f1bbeb139fb66abd941dea5e656 { 'aliquot_tag': 'ALQ_2fb9b5a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-00389.RNA-Seq.R1_L007.T C3N-00389 UCEC RNA-Seq tumor CPT0026270006 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L007_R1_001.fastq.gz 4604678218 FASTQ R1_L007 unaligned CPTAC3 dd9cffde-1af6-49c4-b230-6b68529c0cab 8e19c7a596c5d2b73df803994dd495a2 { 'aliquot_tag': 'ALQ_2fb9b5a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-00389.RNA-Seq.R2_L007.T C3N-00389 UCEC RNA-Seq tumor CPT0026270006 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L007_R2_001.fastq.gz 4591362098 FASTQ R2_L007 unaligned CPTAC3 0a029fc1-cddc-482f-8d17-f1aee87e877f ad540af46ed93a285cb0b8a5ba19a74b { 'aliquot_tag': 'ALQ_2fb9b5a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-00389.RNA-Seq.R1_L007.T C3N-00389 UCEC RNA-Seq tumor CPT0026270006 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L007_R1_001.fastq.gz 4604678218 FASTQ R1_L007 unaligned CPTAC3 dd9cffde-1af6-49c4-b230-6b68529c0cab 8e19c7a596c5d2b73df803994dd495a2 { 'aliquot_tag': 'ALQ_2fb9b5a4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00389.RNA-Seq.R2_L007.T C3N-00389 UCEC RNA-Seq tumor CPT0026270006 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L007_R2_001.fastq.gz 4591362098 FASTQ R2_L007 unaligned CPTAC3 0a029fc1-cddc-482f-8d17-f1aee87e877f ad540af46ed93a285cb0b8a5ba19a74b { 'aliquot_tag': 'ALQ_2fb9b5a4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00389.RNA-Seq.transcriptome.T.hg38 C3N-00389 UCEC RNA-Seq tumor CPT0026270006 60adb9ee-7a51-41f7-9e9d-14d42ad5ce40.rna_seq.transcriptome.gdc_realn.bam 9577712664 BAM transcriptome harmonized CPTAC3 b07522df-a529-48b8-b68e-c95971ec35ac 8e345c33e9b8e78cc6194bec4cd156d9 { 'aliquot_tag': 'ALQ_2fb9b5a4', 'gdc_sample_type': 'Primary Tumor' } C3N-00389.WGS.N C3N-00389 UCEC WGS blood_normal CPT0026370002 CPT0026370002.WholeGenome.RP-1303.bam 84755426951 BAM aligned CPTAC3 3107c5e6-ce5b-433c-b273-0dfcfe996477 fca235c9ab501b5f35652fa3d2283932 { 'aliquot_tag': 'ALQ_e388a218', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00389.WGS.N.hg38 C3N-00389 UCEC WGS blood_normal CPT0026370002 7306b3df-21f1-45bd-8905-0d6be9035f4d_gdc_realn.bam 123230647807 BAM harmonized CPTAC3 ac7408b2-96a1-4736-8e97-f5ae263c3b21 810672fa3112dc300278db2512df6f39 { 'aliquot_tag': 'ALQ_e388a218', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20601,8 +22369,8 @@ C3N-00390.DUP_6073daf.miRNA-Seq.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017440009 C3N-00390.DUP_6073daf.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017440009 9de1c65c-40cc-46fa-a66a-4cb8b7e34304_mirnaseq_gdc_realn.bam 519476566 BAM harmonized CPTAC3 9f691639-b9f8-4a78-b1dd-de2750e19d19 8ff2ea12b4ac9c0a9a4b9ea7ad5c35da { 'aliquot_tag': 'DUP_6073daf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00390.DUP_6073daf.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 b4ba86d9-e1ce-43fa-9d1d-3f75a144463c.rna_seq.chimeric.gdc_realn.bam 213978818 BAM chimeric harmonized CPTAC3 adc72ea4-a200-4942-95d4-ada98d5b716b dff0047aa9997aabd89f407a6529f762 { 'aliquot_tag': 'DUP_6073daf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00390.DUP_6073daf.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 b4ba86d9-e1ce-43fa-9d1d-3f75a144463c.rna_seq.genomic.gdc_realn.bam 7958427887 BAM genomic harmonized CPTAC3 e6e25830-1df1-4634-bbd6-e5d7af6ba4c3 b7aa29815118ee676e9086fe23c6cc2a { 'aliquot_tag': 'DUP_6073daf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00390.DUP_6073daf.RNA-Seq.R1_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 200518_UNC32-K00270_0247_AHH573BBXY_ATGTAAGT-ACTCTATG_S43_L008_R1_001.fastq.gz 3657936333 FASTQ R1_L008 unaligned CPTAC3 6cfbe052-98a8-44be-b136-fd587b9881f2 4db0afc7b33ec018165240f301ecf514 { 'aliquot_tag': 'DUP_6073daf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00390.DUP_6073daf.RNA-Seq.R2_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 200518_UNC32-K00270_0247_AHH573BBXY_ATGTAAGT-ACTCTATG_S43_L008_R2_001.fastq.gz 4275608311 FASTQ R2_L008 unaligned CPTAC3 9184058d-e03e-46e2-88f1-3d5d51929248 b9ff2d1cb39476cbaa21736a1c6c11b0 { 'aliquot_tag': 'DUP_6073daf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00390.DUP_6073daf.RNA-Seq.R1_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 200518_UNC32-K00270_0247_AHH573BBXY_ATGTAAGT-ACTCTATG_S43_L008_R1_001.fastq.gz 3657936333 FASTQ R1_L008 unaligned CPTAC3 6cfbe052-98a8-44be-b136-fd587b9881f2 4db0afc7b33ec018165240f301ecf514 { 'aliquot_tag': 'DUP_6073daf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3N-00390.DUP_6073daf.RNA-Seq.R2_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 200518_UNC32-K00270_0247_AHH573BBXY_ATGTAAGT-ACTCTATG_S43_L008_R2_001.fastq.gz 4275608311 FASTQ R2_L008 unaligned CPTAC3 9184058d-e03e-46e2-88f1-3d5d51929248 b9ff2d1cb39476cbaa21736a1c6c11b0 { 'aliquot_tag': 'DUP_6073daf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3N-00390.DUP_6073daf.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017440009 b4ba86d9-e1ce-43fa-9d1d-3f75a144463c.rna_seq.transcriptome.gdc_realn.bam 8886131136 BAM transcriptome harmonized CPTAC3 b2618521-711e-451d-a539-b1dc0c66c0e5 508e9a1c0b220a0d1f5f09f21f14629b { 'aliquot_tag': 'DUP_6073daf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00390.DUP_78e20c6.MethArray.Green.T C3N-00390 CCRCC Methylation Array tumor CPT0017420012 204367470124_R08C01_Grn.idat 13677881 IDAT Green NA CPTAC3 cdab96de-1419-45e0-a8bb-d67bb58d66f5 baf124445156b90307678891758be2f4 { 'aliquot_tag': 'DUP_78e20c6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00390.DUP_78e20c6.MethArray.Red.T C3N-00390 CCRCC Methylation Array tumor CPT0017420012 204367470124_R08C01_Red.idat 13677881 IDAT Red NA CPTAC3 7449bb66-f628-430b-8b0a-d3e076f18bb6 07210fa39de89c53d14cce56df5f69fa { 'aliquot_tag': 'DUP_78e20c6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -20619,16 +22387,16 @@ C3N-00390.DUP_88ced566.WXS.T.hg38 C3N-00390 CCRCC WXS tumor CPT0017440012 443fd9 C3N-00390.DUP_8947c80f.miRNA-Seq.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017420009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L005_R1_001.unaln.bam 285682717 BAM unaligned CPTAC3 86ab0106-c981-433d-a2bd-dc862b97c29d a5f797b74b479a4e986cd1cbce090e5f { 'aliquot_tag': 'DUP_8947c80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00390.DUP_8947c80f.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017420009 541cdfa9-af97-44fc-b90b-13cc387ec13e_mirnaseq_gdc_realn.bam 320559853 BAM harmonized CPTAC3 4f72ef3d-1c68-438a-b9b0-8931eceab907 238bd05041529efd4529dca167409584 { 'aliquot_tag': 'DUP_8947c80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00390.DUP_8947c80f.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 6a01486c-602e-4c5b-b7d4-6b17fe901630.rna_seq.chimeric.gdc_realn.bam 148676584 BAM chimeric harmonized CPTAC3 eeca3fc5-13cd-415b-b9c7-800d5eefd925 61b1f627111ae9c1e46e56361ddde259 { 'aliquot_tag': 'DUP_8947c80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00390.DUP_8947c80f.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 6a01486c-602e-4c5b-b7d4-6b17fe901630.rna_seq.genomic.gdc_realn.bam 9172421582 BAM genomic harmonized CPTAC3 c01e0d02-311c-499c-9b82-28fab869d8d6 1baf80ed39fe49d68096ed67f4b87b95 { 'aliquot_tag': 'DUP_8947c80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00390.DUP_8947c80f.RNA-Seq.R1_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 200518_UNC32-K00270_0247_AHH573BBXY_CGGCGTGA-GCGCCTGT_S44_L008_R1_001.fastq.gz 4020863735 FASTQ R1_L008 unaligned CPTAC3 905058aa-6424-47a3-b1cf-3f06442145b7 ae7bd894439e0bab3e49e2f610496b52 { 'aliquot_tag': 'DUP_8947c80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00390.DUP_8947c80f.RNA-Seq.R2_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 200518_UNC32-K00270_0247_AHH573BBXY_CGGCGTGA-GCGCCTGT_S44_L008_R2_001.fastq.gz 4987980812 FASTQ R2_L008 unaligned CPTAC3 eff14575-0fda-4b6f-8048-c27b0ff25568 d21c6686ec83998a33dc422ca58851ec { 'aliquot_tag': 'DUP_8947c80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00390.DUP_8947c80f.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 6a01486c-602e-4c5b-b7d4-6b17fe901630.rna_seq.genomic.gdc_realn.bam 9172421582 BAM genomic harmonized CPTAC3 7e231606-0238-4680-9c1b-ed527887dde4 1baf80ed39fe49d68096ed67f4b87b95 { 'aliquot_tag': 'DUP_8947c80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00390.DUP_8947c80f.RNA-Seq.R1_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 200518_UNC32-K00270_0247_AHH573BBXY_CGGCGTGA-GCGCCTGT_S44_L008_R1_001.fastq.gz 4020863735 FASTQ R1_L008 unaligned CPTAC3 905058aa-6424-47a3-b1cf-3f06442145b7 ae7bd894439e0bab3e49e2f610496b52 { 'aliquot_tag': 'DUP_8947c80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3N-00390.DUP_8947c80f.RNA-Seq.R2_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 200518_UNC32-K00270_0247_AHH573BBXY_CGGCGTGA-GCGCCTGT_S44_L008_R2_001.fastq.gz 4987980812 FASTQ R2_L008 unaligned CPTAC3 eff14575-0fda-4b6f-8048-c27b0ff25568 d21c6686ec83998a33dc422ca58851ec { 'aliquot_tag': 'DUP_8947c80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3N-00390.DUP_8947c80f.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017420009 6a01486c-602e-4c5b-b7d4-6b17fe901630.rna_seq.transcriptome.gdc_realn.bam 11986468487 BAM transcriptome harmonized CPTAC3 310ca6aa-33ec-4cd4-ab4a-39a32570e1b3 964f699aeeef7b1d1b5a057acfea3c1d { 'aliquot_tag': 'DUP_8947c80f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00390.DUP_def2e016.miRNA-Seq.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017380009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTAGAG_S31_L005_R1_001.unaln.bam 238255594 BAM unaligned CPTAC3 35b33871-db9a-4d29-a63b-cc55792e404a 64a02ef7c0e601d3d4d4d32f825bfd35 { 'aliquot_tag': 'DUP_def2e016', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00390.DUP_def2e016.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017380009 51fff035-90ad-4eb3-8e7e-1ae9aa243110_mirnaseq_gdc_realn.bam 264378862 BAM harmonized CPTAC3 79d2168e-077e-471f-934d-efbed6b9b817 ac0f6e220d0af5027de4b02fa68b397d { 'aliquot_tag': 'DUP_def2e016', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00390.DUP_def2e016.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 dae9e94a-f914-4d78-95a8-d749f7b9d5e8.rna_seq.chimeric.gdc_realn.bam 298650148 BAM chimeric harmonized CPTAC3 9117e226-8548-405a-830a-ffd00f664d86 38fd23fdcaf1fe8603e8e9e5669d1a68 { 'aliquot_tag': 'DUP_def2e016', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00390.DUP_def2e016.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 dae9e94a-f914-4d78-95a8-d749f7b9d5e8.rna_seq.genomic.gdc_realn.bam 8938890409 BAM genomic harmonized CPTAC3 e9a1469a-8a75-4f95-973a-bfbd4160de0a 29090825d5e4d020f8a85a98b83f3601 { 'aliquot_tag': 'DUP_def2e016', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00390.DUP_def2e016.RNA-Seq.R1_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 200518_UNC32-K00270_0247_AHH573BBXY_TAATACAG-ATATTCAC_S46_L008_R1_001.fastq.gz 4056712338 FASTQ R1_L008 unaligned CPTAC3 2002689b-cc74-438b-9bbf-cca9f937445e 72e2a1f9eee1925b879d904d9c8deb27 { 'aliquot_tag': 'DUP_def2e016', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00390.DUP_def2e016.RNA-Seq.R2_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 200518_UNC32-K00270_0247_AHH573BBXY_TAATACAG-ATATTCAC_S46_L008_R2_001.fastq.gz 4819783727 FASTQ R2_L008 unaligned CPTAC3 88c52f10-b800-41ff-bfcc-692c23a2be2e 62cacb3ff570e16f100f97078cd68093 { 'aliquot_tag': 'DUP_def2e016', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00390.DUP_def2e016.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 dae9e94a-f914-4d78-95a8-d749f7b9d5e8.rna_seq.genomic.gdc_realn.bam 8938890409 BAM genomic harmonized CPTAC3 8dbd9844-56e6-4a64-b8ea-cc29339d8141 29090825d5e4d020f8a85a98b83f3601 { 'aliquot_tag': 'DUP_def2e016', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00390.DUP_def2e016.RNA-Seq.R1_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 200518_UNC32-K00270_0247_AHH573BBXY_TAATACAG-ATATTCAC_S46_L008_R1_001.fastq.gz 4056712338 FASTQ R1_L008 unaligned CPTAC3 2002689b-cc74-438b-9bbf-cca9f937445e 72e2a1f9eee1925b879d904d9c8deb27 { 'aliquot_tag': 'DUP_def2e016', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3N-00390.DUP_def2e016.RNA-Seq.R2_L008.T C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 200518_UNC32-K00270_0247_AHH573BBXY_TAATACAG-ATATTCAC_S46_L008_R2_001.fastq.gz 4819783727 FASTQ R2_L008 unaligned CPTAC3 88c52f10-b800-41ff-bfcc-692c23a2be2e 62cacb3ff570e16f100f97078cd68093 { 'aliquot_tag': 'DUP_def2e016', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3N-00390.DUP_def2e016.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017380009 dae9e94a-f914-4d78-95a8-d749f7b9d5e8.rna_seq.transcriptome.gdc_realn.bam 10824761023 BAM transcriptome harmonized CPTAC3 a66ee1c7-0363-4963-9cf6-8d1aa48e6e9c 2a344be668663b62e890ed061e18cad8 { 'aliquot_tag': 'DUP_def2e016', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00390.MethArray.Green.A C3N-00390 CCRCC Methylation Array tissue_normal CPT0017450009 204930630081_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7fed97a5-6a31-471b-90ad-598b2507c20d 54904cab7ca4ed82c4a6951dfdcb6565 { 'aliquot_tag': 'ALQ_3b67141f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00390.MethArray.Green.T C3N-00390 CCRCC Methylation Array tumor CPT0017410009 202184900128_R01C01_Grn.idat 13676246 IDAT Green NA CPTAC3 10d09e53-f69e-41d2-a629-86db69a7f986 046c4148d38cb63f3191123e895e2bac { 'aliquot_tag': 'ALQ_cee7b2df', 'gdc_sample_type': 'Primary Tumor' } @@ -20640,12 +22408,12 @@ C3N-00390.miRNA-Seq.T C3N-00390 CCRCC miRNA-Seq tumor CPT0017410006 180924_UNC31 C3N-00390.miRNA-Seq.T.hg38 C3N-00390 CCRCC miRNA-Seq tumor CPT0017410006 859a6c1b-29d8-4189-913f-8e84d91908df_mirnaseq_gdc_realn.bam 352327802 BAM harmonized CPTAC3 4669bb34-a110-4a4e-a2ac-43f59cb8532a 2e7df52566986eab981b5a392a1a9529 { 'aliquot_tag': 'ALQ_5e58af4e', 'gdc_sample_type': 'Primary Tumor' } C3N-00390.RNA-Seq.chimeric.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 7700b944-4b59-4662-95af-3ec5a6db33eb.rna_seq.chimeric.gdc_realn.bam 56075028 BAM chimeric harmonized CPTAC3 02497492-bea6-4b24-a916-b727c4156ef0 2ed08482684c81f58f96beb0d2dcdb3a { 'aliquot_tag': 'ALQ_abd8098e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00390.RNA-Seq.chimeric.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 e9a0a062-6501-4526-9834-014b091cc381.rna_seq.chimeric.gdc_realn.bam 100660652 BAM chimeric harmonized CPTAC3 f55db855-edad-4906-bada-a690f6a21659 34149eb9f987caa588012fb70b7160b3 { 'aliquot_tag': 'ALQ_5e58af4e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00390.RNA-Seq.genomic.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 7700b944-4b59-4662-95af-3ec5a6db33eb.rna_seq.genomic.gdc_realn.bam 7631709814 BAM genomic harmonized CPTAC3 7dac61d5-1e10-4561-9296-5e5b726ff369 3e574f00c48cd1d1b19477dca41ea6f2 { 'aliquot_tag': 'ALQ_abd8098e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00390.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 e9a0a062-6501-4526-9834-014b091cc381.rna_seq.genomic.gdc_realn.bam 10407796224 BAM genomic harmonized CPTAC3 5905d0a8-7826-4f1a-906a-74563f78fe1e 6fc2273296458768b3f10a827ebcc57e { 'aliquot_tag': 'ALQ_5e58af4e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00390.RNA-Seq.R1_L001.T C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L001_R1_001.fastq.gz 5501332065 FASTQ R1_L001 unaligned CPTAC3 cfd17a8e-5a92-4ef4-9071-8c31a235e709 4ad9cde11d31a7da229c683501c9f9fd { 'aliquot_tag': 'ALQ_5e58af4e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00390.RNA-Seq.R1_L005.A C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 171212_UNC31-K00269_0102_AHN5MMBBXX_TAGCTT_S20_L005_R1_001.fastq.gz 3719497909 FASTQ R1_L005 unaligned CPTAC3 e043fb64-5301-4a3b-a854-35c982a50471 e12b712f21e9aee59149a524c3a466db { 'aliquot_tag': 'ALQ_abd8098e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00390.RNA-Seq.R2_L001.T C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L001_R2_001.fastq.gz 5718157935 FASTQ R2_L001 unaligned CPTAC3 aac89418-1bdf-4820-b7ad-47d287e141be 7490558949170ebf04fbe6159514f449 { 'aliquot_tag': 'ALQ_5e58af4e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00390.RNA-Seq.R2_L005.A C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 171212_UNC31-K00269_0102_AHN5MMBBXX_TAGCTT_S20_L005_R2_001.fastq.gz 4091132493 FASTQ R2_L005 unaligned CPTAC3 b450c8e8-7898-4555-b7f5-3b3921d17b22 3d38d27029fca75c93638aef7e85af29 { 'aliquot_tag': 'ALQ_abd8098e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00390.RNA-Seq.genomic.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 7700b944-4b59-4662-95af-3ec5a6db33eb.rna_seq.genomic.gdc_realn.bam 7631709814 BAM genomic harmonized CPTAC3 ba21c85d-543b-43dc-b117-8ed2b4d8fc34 3e574f00c48cd1d1b19477dca41ea6f2 { 'aliquot_tag': 'ALQ_abd8098e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00390.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 e9a0a062-6501-4526-9834-014b091cc381.rna_seq.genomic.gdc_realn.bam 10407796224 BAM genomic harmonized CPTAC3 4b1618e3-7f50-4b00-b4fe-78bf951edebc 6fc2273296458768b3f10a827ebcc57e { 'aliquot_tag': 'ALQ_5e58af4e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00390.RNA-Seq.R1_L001.T C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L001_R1_001.fastq.gz 5501332065 FASTQ R1_L001 unaligned CPTAC3 cfd17a8e-5a92-4ef4-9071-8c31a235e709 4ad9cde11d31a7da229c683501c9f9fd { 'aliquot_tag': 'ALQ_5e58af4e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00390.RNA-Seq.R1_L005.A C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 171212_UNC31-K00269_0102_AHN5MMBBXX_TAGCTT_S20_L005_R1_001.fastq.gz 3719497909 FASTQ R1_L005 unaligned CPTAC3 e043fb64-5301-4a3b-a854-35c982a50471 e12b712f21e9aee59149a524c3a466db { 'aliquot_tag': 'ALQ_abd8098e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00390.RNA-Seq.R2_L001.T C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L001_R2_001.fastq.gz 5718157935 FASTQ R2_L001 unaligned CPTAC3 aac89418-1bdf-4820-b7ad-47d287e141be 7490558949170ebf04fbe6159514f449 { 'aliquot_tag': 'ALQ_5e58af4e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00390.RNA-Seq.R2_L005.A C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 171212_UNC31-K00269_0102_AHN5MMBBXX_TAGCTT_S20_L005_R2_001.fastq.gz 4091132493 FASTQ R2_L005 unaligned CPTAC3 b450c8e8-7898-4555-b7f5-3b3921d17b22 3d38d27029fca75c93638aef7e85af29 { 'aliquot_tag': 'ALQ_abd8098e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-00390.RNA-Seq.transcriptome.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal CPT0017450006 7700b944-4b59-4662-95af-3ec5a6db33eb.rna_seq.transcriptome.gdc_realn.bam 8865769343 BAM transcriptome harmonized CPTAC3 d72e9bf2-11d5-45af-b1e0-a5f666efbc17 255d749e5be03362530e95479b8c611b { 'aliquot_tag': 'ALQ_abd8098e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00390.RNA-Seq.transcriptome.T.hg38 C3N-00390 CCRCC RNA-Seq tumor CPT0017410006 e9a0a062-6501-4526-9834-014b091cc381.rna_seq.transcriptome.gdc_realn.bam 15297630830 BAM transcriptome harmonized CPTAC3 dda39e9d-666c-4ec0-8538-9b2c3b7497ed b59d78d08c86f69e963eeff850bfe139 { 'aliquot_tag': 'ALQ_5e58af4e', 'gdc_sample_type': 'Primary Tumor' } C3N-00390.WGS.A C3N-00390 CCRCC WGS tissue_normal CPT0017450009 CPT0017450009.WholeGenome.RP-1303.bam 62889901487 BAM aligned CPTAC3 c667594d-f7cc-46c0-b9bf-0458ef18ffc4 18aeade146834513125a461fdd9337ad { 'aliquot_tag': 'ALQ_3b67141f', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20664,16 +22432,16 @@ C3N-00432.MethArray.Green.T C3N-00432 CM Methylation Array tumor CPT0022090009 2 C3N-00432.MethArray.Red.T C3N-00432 CM Methylation Array tumor CPT0022090009 202163550115_R06C01_Red.idat 13676232 IDAT Red NA CPTAC3 b8a35b44-496f-435f-a996-7dd771881c0f 80c105e9b34547eafc822f8b1e86add4 { 'aliquot_tag': 'ALQ_b9b1934c', 'gdc_sample_type': 'Primary Tumor' } C3N-00432.miRNA-Seq.T C3N-00432 CM miRNA-Seq tumor CPT0022090006 181119_UNC31-K00269_0165_AH27WCBBXY_AGTTCC_S38_L005_R1_001.unaln.bam 205423085 BAM unaligned CPTAC3 b91475c5-bd43-4764-abbd-977b2288b701 93f709772dfb17bce2b157edaf6ae24c { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor' } C3N-00432.miRNA-Seq.T.hg38 C3N-00432 CM miRNA-Seq tumor CPT0022090006 180e74e7-7ba0-4001-83cd-60be72e6f44e_mirnaseq_gdc_realn.bam 222999765 BAM harmonized CPTAC3 ca55bc22-50e3-4800-b279-04c014ac6220 134467b9f791f198c5ecd3f94d1878ca { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor' } -C3N-00432.RNA-Seq.chimeric.A.hg38 C3N-00432 CM RNA-Seq tissue_normal CPT0022110010 96c4b9d3-e587-4840-9f66-b217b51fd3df.rna_seq.chimeric.gdc_realn.bam 28101402 BAM chimeric harmonized CPTAC3 d7ab31ff-7dc0-4c6c-9f91-9229cc90984a 5ccf74991a792c15442434678a31937e { 'aliquot_tag': 'ALQ_225a82cd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00432.RNA-Seq.chimeric.T.hg38 C3N-00432 CM RNA-Seq tumor CPT0022090006 1956fc87-1b2d-4fd5-b643-ea54957f769c.rna_seq.chimeric.gdc_realn.bam 144028798 BAM chimeric harmonized CPTAC3 b4b763de-bdb6-4cf7-be21-392a913a8942 aca7f6c05c98c2ce58bb961da9dfdf68 { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor' } -C3N-00432.RNA-Seq.genomic.A.hg38 C3N-00432 CM RNA-Seq tissue_normal CPT0022110010 96c4b9d3-e587-4840-9f66-b217b51fd3df.rna_seq.genomic.gdc_realn.bam 7816072994 BAM genomic harmonized CPTAC3 83c8adcc-8dac-457a-8775-03dd37988b42 85eadbcf8361cf4b63cd8626c8a73c5c { 'aliquot_tag': 'ALQ_225a82cd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00432.RNA-Seq.genomic.T.hg38 C3N-00432 CM RNA-Seq tumor CPT0022090006 1956fc87-1b2d-4fd5-b643-ea54957f769c.rna_seq.genomic.gdc_realn.bam 9601407695 BAM genomic harmonized CPTAC3 ce5c1705-019a-4b89-abd0-bd7c149d0fe5 d65249132d6481c26e9e1aa05d0dfe30 { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor' } -C3N-00432.RNA-Seq.R1_L002.T C3N-00432 CM RNA-Seq tumor CPT0022090006 170818_UNC32-K00270_0051_BHLCCHBBXX_CTTGTA_S5_L002_R1_001.fastq.gz 4241772520 FASTQ R1_L002 unaligned CPTAC3 9b6733fb-3b34-4cd3-8861-9fe8acf74ad2 42793d45c66a7931be87e79099a5a8b0 { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor' } -C3N-00432.RNA-Seq.R1_L008.A C3N-00432 CM RNA-Seq tissue_normal CPT0022110010 180606_UNC32-K00270_0097_AHVCKFBBXX_CAGATC_S30_L008_R1_001.fastq.gz 3466810463 FASTQ R1_L008 unaligned CPTAC3 49745b4a-48e6-4a4a-9918-90567b375b39 285144a499af25ba59ba4de1e222f4a3 { 'aliquot_tag': 'ALQ_225a82cd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00432.RNA-Seq.R2_L002.T C3N-00432 CM RNA-Seq tumor CPT0022090006 170818_UNC32-K00270_0051_BHLCCHBBXX_CTTGTA_S5_L002_R2_001.fastq.gz 4603356234 FASTQ R2_L002 unaligned CPTAC3 f4914f2e-cc3e-44a3-ac2e-1c15a942f40c 78f563a5ff7cb55531fbfcfb48ec23fb { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor' } -C3N-00432.RNA-Seq.R2_L008.A C3N-00432 CM RNA-Seq tissue_normal CPT0022110010 180606_UNC32-K00270_0097_AHVCKFBBXX_CAGATC_S30_L008_R2_001.fastq.gz 3713175100 FASTQ R2_L008 unaligned CPTAC3 d865d1d6-435d-4e76-88f4-bef6f43669fa b2edabd07f4510526f6ee6b7f936c68f { 'aliquot_tag': 'ALQ_225a82cd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00432.RNA-Seq.transcriptome.A.hg38 C3N-00432 CM RNA-Seq tissue_normal CPT0022110010 96c4b9d3-e587-4840-9f66-b217b51fd3df.rna_seq.transcriptome.gdc_realn.bam 7612305137 BAM transcriptome harmonized CPTAC3 cc5e008c-dba9-4476-8c84-6d2c788f084e cc2477eb5e7b0a092571888d74d32ab6 { 'aliquot_tag': 'ALQ_225a82cd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00432.RNA-Seq.transcriptome.T.hg38 C3N-00432 CM RNA-Seq tumor CPT0022090006 1956fc87-1b2d-4fd5-b643-ea54957f769c.rna_seq.transcriptome.gdc_realn.bam 9818733263 BAM transcriptome harmonized CPTAC3 6c70aa42-a7f8-4db7-8b55-f5e2aaa4cb3e 8bb76578536861d0edbb80742ec85727 { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor' } +C3N-00432.RNA-Seq.chimeric.A.hg38 C3N-00432 CM RNA-Seq tissue_normal CPT0022110010 e6be39e8-5247-4d20-826b-9272d921d0cb.rna_seq.chimeric.gdc_realn.bam 28110046 BAM chimeric harmonized CPTAC3 767c51a5-9fbf-40e3-9d4c-4592e2e64a37 81ae8080ea6409f694d1db21fa36d867 { 'aliquot_tag': 'ALQ_225a82cd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00432.RNA-Seq.chimeric.T.hg38 C3N-00432 CM RNA-Seq tumor CPT0022090006 a2e34143-f50b-47a8-bcb0-10944f4897eb.rna_seq.chimeric.gdc_realn.bam 144004224 BAM chimeric harmonized CPTAC3 a2343061-56c1-4f56-90ba-be743fed0cdf cd87a4050dc812be6d5f6eb70043a160 { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor' } +C3N-00432.RNA-Seq.genomic.A.hg38 C3N-00432 CM RNA-Seq tissue_normal CPT0022110010 e6be39e8-5247-4d20-826b-9272d921d0cb.rna_seq.genomic.gdc_realn.bam 7816657763 BAM genomic harmonized CPTAC3 7e6ea41c-73de-4ac6-b31a-06a1e1413b13 96c4146cc3a6fca37b9ee27e2aac595a { 'aliquot_tag': 'ALQ_225a82cd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00432.RNA-Seq.genomic.T.hg38 C3N-00432 CM RNA-Seq tumor CPT0022090006 a2e34143-f50b-47a8-bcb0-10944f4897eb.rna_seq.genomic.gdc_realn.bam 9602895812 BAM genomic harmonized CPTAC3 ca96d242-0dc7-42d6-b519-fb1566aa1b18 7cf33b4f26496eb1e643b6de96324498 { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor' } +C3N-00432.RNA-Seq.R1_L002.T C3N-00432 CM RNA-Seq tumor CPT0022090006 170818_UNC32-K00270_0051_BHLCCHBBXX_CTTGTA_S5_L002_R1_001.fastq.gz 4241772520 FASTQ R1_L002 unaligned CPTAC3 9b6733fb-3b34-4cd3-8861-9fe8acf74ad2 42793d45c66a7931be87e79099a5a8b0 { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00432.RNA-Seq.R1_L008.A C3N-00432 CM RNA-Seq tissue_normal CPT0022110010 180606_UNC32-K00270_0097_AHVCKFBBXX_CAGATC_S30_L008_R1_001.fastq.gz 3466810463 FASTQ R1_L008 unaligned CPTAC3 49745b4a-48e6-4a4a-9918-90567b375b39 285144a499af25ba59ba4de1e222f4a3 { 'aliquot_tag': 'ALQ_225a82cd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00432.RNA-Seq.R2_L002.T C3N-00432 CM RNA-Seq tumor CPT0022090006 170818_UNC32-K00270_0051_BHLCCHBBXX_CTTGTA_S5_L002_R2_001.fastq.gz 4603356234 FASTQ R2_L002 unaligned CPTAC3 f4914f2e-cc3e-44a3-ac2e-1c15a942f40c 78f563a5ff7cb55531fbfcfb48ec23fb { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-00432.RNA-Seq.R2_L008.A C3N-00432 CM RNA-Seq tissue_normal CPT0022110010 180606_UNC32-K00270_0097_AHVCKFBBXX_CAGATC_S30_L008_R2_001.fastq.gz 3713175100 FASTQ R2_L008 unaligned CPTAC3 d865d1d6-435d-4e76-88f4-bef6f43669fa b2edabd07f4510526f6ee6b7f936c68f { 'aliquot_tag': 'ALQ_225a82cd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00432.RNA-Seq.transcriptome.A.hg38 C3N-00432 CM RNA-Seq tissue_normal CPT0022110010 e6be39e8-5247-4d20-826b-9272d921d0cb.rna_seq.transcriptome.gdc_realn.bam 8603085841 BAM transcriptome harmonized CPTAC3 27d57937-0b6c-4a75-a399-83ad9acadcc2 4603b1587a999c8572995ac571c81dc4 { 'aliquot_tag': 'ALQ_225a82cd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00432.RNA-Seq.transcriptome.T.hg38 C3N-00432 CM RNA-Seq tumor CPT0022090006 a2e34143-f50b-47a8-bcb0-10944f4897eb.rna_seq.transcriptome.gdc_realn.bam 11162599498 BAM transcriptome harmonized CPTAC3 626c5015-7c9d-45d4-9c5f-aacd9edee590 1492ecb947ad07510f68910223ebb260 { 'aliquot_tag': 'ALQ_290e8edd', 'gdc_sample_type': 'Primary Tumor' } C3N-00432.WGS.N C3N-00432 CM WGS blood_normal CPT0022120002 CPT0022120002.WholeGenome.RP-1303.bam 78561073430 BAM aligned CPTAC3 91dc6e51-12b2-42b6-bad7-ec0b26817206 41fd88bf7d28050a1a837ca849ca364e { 'aliquot_tag': 'ALQ_92efa870', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00432.WGS.N.hg38 C3N-00432 CM WGS blood_normal CPT0022120002 735cc0c8-63e1-44cb-b67c-581b7d150098_gdc_realn.bam 117706945884 BAM harmonized CPTAC3 bca5f3f9-88b8-4a6e-928f-0e126a02fc20 7aa5b74d80d4173520fd224caa8784ae { 'aliquot_tag': 'ALQ_92efa870', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00432.WGS.T C3N-00432 CM WGS tumor CPT0022090009 CPT0022090009.WholeGenome.RP-1303.bam 63926646299 BAM aligned CPTAC3 e7d17861-dde8-41de-8a18-c0a277a2bf9d b688d2ca559cc3dcb232a2faa438cdff { 'aliquot_tag': 'ALQ_b9b1934c', 'gdc_sample_type': 'Primary Tumor' } @@ -20692,12 +22460,12 @@ C3N-00433.miRNA-Seq.T C3N-00433 LUAD miRNA-Seq tumor CPT0021450006 180924_UNC31- C3N-00433.miRNA-Seq.T.hg38 C3N-00433 LUAD miRNA-Seq tumor CPT0021450006 42707b89-4509-45e2-b26f-52e704e2fbe5_mirnaseq_gdc_realn.bam 256536246 BAM harmonized CPTAC3 e25f220e-5e07-4051-8149-8147a914a855 162be80b328f6d81257e43a3e01c684e { 'aliquot_tag': 'ALQ_46873b57', 'gdc_sample_type': 'Primary Tumor' } C3N-00433.RNA-Seq.chimeric.A.hg38 C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 ea8ab49a-499a-48b6-87b6-9539521b9201.rna_seq.chimeric.gdc_realn.bam 69755344 BAM chimeric harmonized CPTAC3 1b26129a-803c-49db-9990-448135fc0442 3c8bb6ad96327bea577a84af64e4aca9 { 'aliquot_tag': 'ALQ_8377d656', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00433.RNA-Seq.chimeric.T.hg38 C3N-00433 LUAD RNA-Seq tumor CPT0021450006 70f8b3f1-6877-4cd3-a2f5-51e8cd15a147.rna_seq.chimeric.gdc_realn.bam 120519758 BAM chimeric harmonized CPTAC3 22a8729c-482d-4509-9596-bd2e8c127623 f74441761b106892f9b309f932374407 { 'aliquot_tag': 'ALQ_46873b57', 'gdc_sample_type': 'Primary Tumor' } -C3N-00433.RNA-Seq.genomic.A.hg38 C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 ea8ab49a-499a-48b6-87b6-9539521b9201.rna_seq.genomic.gdc_realn.bam 8815171588 BAM genomic harmonized CPTAC3 e16e2b16-aed7-4d5e-b56e-3c24ac86d056 b6192d31b67c60c2c0451aa1f1a68190 { 'aliquot_tag': 'ALQ_8377d656', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00433.RNA-Seq.genomic.T.hg38 C3N-00433 LUAD RNA-Seq tumor CPT0021450006 70f8b3f1-6877-4cd3-a2f5-51e8cd15a147.rna_seq.genomic.gdc_realn.bam 9029090679 BAM genomic harmonized CPTAC3 7bb73ba9-3d2d-4b6d-a524-fadbea4a0295 a7c5eb70c1f80cba7f23b34e0b4481f4 { 'aliquot_tag': 'ALQ_46873b57', 'gdc_sample_type': 'Primary Tumor' } -C3N-00433.RNA-Seq.R1_L001.A C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L001_R1_001.fastq.gz 4079686548 FASTQ R1_L001 unaligned CPTAC3 c443cb0f-2b18-4dc6-afa3-4fbcd21d8796 922f30ef64f933479069f0aa6c367f20 { 'aliquot_tag': 'ALQ_8377d656', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00433.RNA-Seq.R1_L008.T C3N-00433 LUAD RNA-Seq tumor CPT0021450006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L008_R1_001.fastq.gz 4231591241 FASTQ R1_L008 unaligned CPTAC3 f75a7f21-ffb6-4781-a55f-11a56b32dc42 6a2fba174985f53b93d9f3124cf6994a { 'aliquot_tag': 'ALQ_46873b57', 'gdc_sample_type': 'Primary Tumor' } -C3N-00433.RNA-Seq.R2_L001.A C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L001_R2_001.fastq.gz 4482697049 FASTQ R2_L001 unaligned CPTAC3 a49dce08-4fbf-4947-94f0-a5de741eb002 90b601b08ee502876a79dfded2432288 { 'aliquot_tag': 'ALQ_8377d656', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00433.RNA-Seq.R2_L008.T C3N-00433 LUAD RNA-Seq tumor CPT0021450006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L008_R2_001.fastq.gz 4461495977 FASTQ R2_L008 unaligned CPTAC3 23c754d1-06c3-406f-9fb5-ad1c3a807dc4 77451a64b6b6952464260329841732dd { 'aliquot_tag': 'ALQ_46873b57', 'gdc_sample_type': 'Primary Tumor' } +C3N-00433.RNA-Seq.genomic.A.hg38 C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 ea8ab49a-499a-48b6-87b6-9539521b9201.rna_seq.genomic.gdc_realn.bam 8815171588 BAM genomic harmonized CPTAC3 d6c613aa-0d42-4030-960f-80bb71d3f739 b6192d31b67c60c2c0451aa1f1a68190 { 'aliquot_tag': 'ALQ_8377d656', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00433.RNA-Seq.genomic.T.hg38 C3N-00433 LUAD RNA-Seq tumor CPT0021450006 70f8b3f1-6877-4cd3-a2f5-51e8cd15a147.rna_seq.genomic.gdc_realn.bam 9029090679 BAM genomic harmonized CPTAC3 24e72fb5-004f-4097-9dfa-d2bbefd49836 a7c5eb70c1f80cba7f23b34e0b4481f4 { 'aliquot_tag': 'ALQ_46873b57', 'gdc_sample_type': 'Primary Tumor' } +C3N-00433.RNA-Seq.R1_L001.A C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L001_R1_001.fastq.gz 4079686548 FASTQ R1_L001 unaligned CPTAC3 c443cb0f-2b18-4dc6-afa3-4fbcd21d8796 922f30ef64f933479069f0aa6c367f20 { 'aliquot_tag': 'ALQ_8377d656', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-00433.RNA-Seq.R1_L008.T C3N-00433 LUAD RNA-Seq tumor CPT0021450006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L008_R1_001.fastq.gz 4231591241 FASTQ R1_L008 unaligned CPTAC3 f75a7f21-ffb6-4781-a55f-11a56b32dc42 6a2fba174985f53b93d9f3124cf6994a { 'aliquot_tag': 'ALQ_46873b57', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00433.RNA-Seq.R2_L001.A C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 171215_UNC32-K00270_0072_AHN3THBBXX_TAGCTT_S1_L001_R2_001.fastq.gz 4482697049 FASTQ R2_L001 unaligned CPTAC3 a49dce08-4fbf-4947-94f0-a5de741eb002 90b601b08ee502876a79dfded2432288 { 'aliquot_tag': 'ALQ_8377d656', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-00433.RNA-Seq.R2_L008.T C3N-00433 LUAD RNA-Seq tumor CPT0021450006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L008_R2_001.fastq.gz 4461495977 FASTQ R2_L008 unaligned CPTAC3 23c754d1-06c3-406f-9fb5-ad1c3a807dc4 77451a64b6b6952464260329841732dd { 'aliquot_tag': 'ALQ_46873b57', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00433.RNA-Seq.transcriptome.A.hg38 C3N-00433 LUAD RNA-Seq tissue_normal CPT0021490006 ea8ab49a-499a-48b6-87b6-9539521b9201.rna_seq.transcriptome.gdc_realn.bam 10343631294 BAM transcriptome harmonized CPTAC3 4adc147f-6939-4b06-9bce-9c1f69f0f203 ab74012bfec72d1b563f16f3225f8847 { 'aliquot_tag': 'ALQ_8377d656', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00433.RNA-Seq.transcriptome.T.hg38 C3N-00433 LUAD RNA-Seq tumor CPT0021450006 70f8b3f1-6877-4cd3-a2f5-51e8cd15a147.rna_seq.transcriptome.gdc_realn.bam 9506977441 BAM transcriptome harmonized CPTAC3 573e8655-5aab-4510-8fc1-cc00e6da9069 14984db4e67acdcf00c43fb43b884ccd { 'aliquot_tag': 'ALQ_46873b57', 'gdc_sample_type': 'Primary Tumor' } C3N-00433.WGS.A C3N-00433 LUAD WGS tissue_normal CPT0021490008 CPT0021490008.WholeGenome.RP-1303.bam 37569068335 BAM aligned CPTAC3 422b242a-7059-44ed-ab5d-134196f0969e 2a24c344b525542cd285c3322f52b358 { 'aliquot_tag': 'ALQ_64cffb51', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20718,16 +22486,16 @@ C3N-00434.miRNA-Seq.A C3N-00434 CM miRNA-Seq tissue_normal CPT0022680005 181119_ C3N-00434.miRNA-Seq.A.hg38 C3N-00434 CM miRNA-Seq tissue_normal CPT0022680005 c2852065-644a-4283-b1da-576f42b14101_mirnaseq_gdc_realn.bam 238277485 BAM harmonized CPTAC3 5a687e78-07f8-4401-9e54-49f8796f2ffc 1293c247dfb0801963c886ac0642eb20 { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00434.miRNA-Seq.T C3N-00434 CM miRNA-Seq tumor CPT0022650009 181119_UNC31-K00269_0165_AH27WCBBXY_CATGGC_S10_L004_R1_001.unaln.bam 164299283 BAM unaligned CPTAC3 2d223875-7296-4e35-9146-8ee78b24a938 43f9100c7540a881a824e24fca482333 { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor' } C3N-00434.miRNA-Seq.T.hg38 C3N-00434 CM miRNA-Seq tumor CPT0022650009 7edd7fc7-990a-4bc4-aaca-9af5abfeb380_mirnaseq_gdc_realn.bam 175726852 BAM harmonized CPTAC3 be2a4b06-c518-439a-8594-9ccc6ecea551 84b5232f03c48b7657525a7ed805d4b7 { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor' } -C3N-00434.RNA-Seq.chimeric.A.hg38 C3N-00434 CM RNA-Seq tissue_normal CPT0022680005 30808590-4ff3-4ae2-b6d2-06b1ae663b81.rna_seq.chimeric.gdc_realn.bam 25907609 BAM chimeric harmonized CPTAC3 84115ceb-c650-425f-8622-8ee25d0befc4 f978b926ae8727d9ea62c7f3ec0ae763 { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00434.RNA-Seq.chimeric.T.hg38 C3N-00434 CM RNA-Seq tumor CPT0022650009 06e501cb-f9bf-4bb7-821b-b5e33cdeade2.rna_seq.chimeric.gdc_realn.bam 96085791 BAM chimeric harmonized CPTAC3 465f2326-cb36-417e-a0b9-7ef78228d12c 5939ea32291ef627fd825fcfc517d57b { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor' } -C3N-00434.RNA-Seq.genomic.A.hg38 C3N-00434 CM RNA-Seq tissue_normal CPT0022680005 30808590-4ff3-4ae2-b6d2-06b1ae663b81.rna_seq.genomic.gdc_realn.bam 9340334124 BAM genomic harmonized CPTAC3 c6940373-d053-4110-b1b1-aa5a3ee9fdf1 ef07df546d2b440d5e1c1185b305fad8 { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00434.RNA-Seq.genomic.T.hg38 C3N-00434 CM RNA-Seq tumor CPT0022650009 06e501cb-f9bf-4bb7-821b-b5e33cdeade2.rna_seq.genomic.gdc_realn.bam 8728095373 BAM genomic harmonized CPTAC3 e857afc8-0aac-42d1-b8f8-207fe4955d4f b83f9f9457906be98fea515056f3ae00 { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor' } -C3N-00434.RNA-Seq.R1_L001.T C3N-00434 CM RNA-Seq tumor CPT0022650009 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L001_R1_001.fastq.gz 3651383130 FASTQ R1_L001 unaligned CPTAC3 603adcc1-47b4-4629-bee9-f39f0505a802 5fe8923f08c9a71e1aaebf6e68493fdc { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor' } -C3N-00434.RNA-Seq.R1_L008.A C3N-00434 CM RNA-Seq tissue_normal CPT0022680005 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 4037954949 FASTQ R1_L008 unaligned CPTAC3 82b7aeb4-24c3-4470-bd38-892fd296a6d0 15083e2d36a2f1429631032f5cddcfd6 { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00434.RNA-Seq.R2_L001.T C3N-00434 CM RNA-Seq tumor CPT0022650009 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L001_R2_001.fastq.gz 4144670574 FASTQ R2_L001 unaligned CPTAC3 88e30639-da85-4172-b27b-a8379f239da2 b833d233edb0d69060d087968339fd40 { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor' } -C3N-00434.RNA-Seq.R2_L008.A C3N-00434 CM RNA-Seq tissue_normal CPT0022680005 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 4410909626 FASTQ R2_L008 unaligned CPTAC3 80dd12b0-90a4-4a73-b5ed-2c4a537507d4 9177127dfea5c0cadf1b28f19bb9ae6d { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00434.RNA-Seq.transcriptome.A.hg38 C3N-00434 CM RNA-Seq tissue_normal CPT0022680005 30808590-4ff3-4ae2-b6d2-06b1ae663b81.rna_seq.transcriptome.gdc_realn.bam 10207598498 BAM transcriptome harmonized CPTAC3 a006ed9a-2380-4a64-9f9c-d817f6ef402e d0f89458566bb2a441894624e1ac692a { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00434.RNA-Seq.transcriptome.T.hg38 C3N-00434 CM RNA-Seq tumor CPT0022650009 06e501cb-f9bf-4bb7-821b-b5e33cdeade2.rna_seq.transcriptome.gdc_realn.bam 9419369951 BAM transcriptome harmonized CPTAC3 8984f78d-953f-48d1-bde7-4326cb9590f5 514b05f4939cf6544dfe906fa300e092 { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor' } +C3N-00434.RNA-Seq.chimeric.A.hg38 C3N-00434 CM RNA-Seq tissue_normal CPT0022680005 e5a1f2f6-5f15-48d5-8cea-3013ad19a875.rna_seq.chimeric.gdc_realn.bam 25888801 BAM chimeric harmonized CPTAC3 3e29e9a1-17dc-4b44-864f-5997b93f5b56 791c07d391d20951de0d3cc9fc9dc74e { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00434.RNA-Seq.chimeric.T.hg38 C3N-00434 CM RNA-Seq tumor CPT0022650009 e7d0e1be-57f8-496a-a41d-654b51f5e775.rna_seq.chimeric.gdc_realn.bam 96068126 BAM chimeric harmonized CPTAC3 6be86b78-3d18-447b-a532-2a9fb644be60 eb58ea9fd399e59d3a283479ee56ca74 { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor' } +C3N-00434.RNA-Seq.genomic.A.hg38 C3N-00434 CM RNA-Seq tissue_normal CPT0022680005 e5a1f2f6-5f15-48d5-8cea-3013ad19a875.rna_seq.genomic.gdc_realn.bam 9342064396 BAM genomic harmonized CPTAC3 98f954bf-9d71-4dcf-844b-7d91482fad34 7aa20c552d6dc8f360aa164119acbf9f { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00434.RNA-Seq.genomic.T.hg38 C3N-00434 CM RNA-Seq tumor CPT0022650009 e7d0e1be-57f8-496a-a41d-654b51f5e775.rna_seq.genomic.gdc_realn.bam 8730304269 BAM genomic harmonized CPTAC3 a2b88e9c-f0ec-41cf-a0cb-cb1a803299f5 ea7b42f00e6d4192edafd7cbab304236 { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor' } +C3N-00434.RNA-Seq.R1_L001.T C3N-00434 CM RNA-Seq tumor CPT0022650009 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L001_R1_001.fastq.gz 3651383130 FASTQ R1_L001 unaligned CPTAC3 603adcc1-47b4-4629-bee9-f39f0505a802 5fe8923f08c9a71e1aaebf6e68493fdc { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00434.RNA-Seq.R1_L008.A C3N-00434 CM RNA-Seq tissue_normal CPT0022680005 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 4037954949 FASTQ R1_L008 unaligned CPTAC3 82b7aeb4-24c3-4470-bd38-892fd296a6d0 15083e2d36a2f1429631032f5cddcfd6 { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00434.RNA-Seq.R2_L001.T C3N-00434 CM RNA-Seq tumor CPT0022650009 171109_UNC31-K00269_0091_BHMFGTBBXX_CTTGTA_S4_L001_R2_001.fastq.gz 4144670574 FASTQ R2_L001 unaligned CPTAC3 88e30639-da85-4172-b27b-a8379f239da2 b833d233edb0d69060d087968339fd40 { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00434.RNA-Seq.R2_L008.A C3N-00434 CM RNA-Seq tissue_normal CPT0022680005 180516_UNC32-K00270_0095_AHTY5LBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 4410909626 FASTQ R2_L008 unaligned CPTAC3 80dd12b0-90a4-4a73-b5ed-2c4a537507d4 9177127dfea5c0cadf1b28f19bb9ae6d { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00434.RNA-Seq.transcriptome.A.hg38 C3N-00434 CM RNA-Seq tissue_normal CPT0022680005 e5a1f2f6-5f15-48d5-8cea-3013ad19a875.rna_seq.transcriptome.gdc_realn.bam 11570772444 BAM transcriptome harmonized CPTAC3 fd129e44-2678-43ec-97fe-5beeb81cf1f6 9998a2a6f4ee7e21065ddd045ebd3f75 { 'aliquot_tag': 'ALQ_5b3e15ca', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00434.RNA-Seq.transcriptome.T.hg38 C3N-00434 CM RNA-Seq tumor CPT0022650009 e7d0e1be-57f8-496a-a41d-654b51f5e775.rna_seq.transcriptome.gdc_realn.bam 10716524734 BAM transcriptome harmonized CPTAC3 7cb6a836-c77a-4bac-a81c-0bb714ffd714 821288e2c7c447a825b5631da7043579 { 'aliquot_tag': 'ALQ_aa189d50', 'gdc_sample_type': 'Primary Tumor' } C3N-00434.WGS.A C3N-00434 CM WGS tissue_normal CPT0022680008 CPT0022680008.WholeGenome.RP-1303.bam 53469993145 BAM aligned CPTAC3 c0490845-d37c-43da-a827-38b759771dba aca046b72be3b7e96a52763e5c0bd01e { 'aliquot_tag': 'ALQ_258f6977', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00434.WGS.A.hg38 C3N-00434 CM WGS tissue_normal CPT0022680008 d6c739a5-cc02-40b2-a920-68ce5c3491b6_wgs_gdc_realn.bam 78861659042 BAM harmonized CPTAC3 b7079df7-8463-428d-b41c-811441cbf3c7 7995d4929e62639d887aaa96f2984b51 { 'aliquot_tag': 'ALQ_258f6977', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00434.WGS.N C3N-00434 CM WGS blood_normal CPT0020980002 CPT0020980002.WholeGenome.RP-1303.bam 52886271614 BAM aligned CPTAC3 33e5f57c-5d39-48d9-8460-458fa2a414f3 4791c08240de9fff506a1e84112e3bd1 { 'aliquot_tag': 'ALQ_a3932395', 'gdc_sample_type': 'Blood Derived Normal' } @@ -20750,12 +22518,12 @@ C3N-00435.miRNA-Seq.T C3N-00435 CCRCC miRNA-Seq tumor CPT0017850006 180924_UNC31 C3N-00435.miRNA-Seq.T.hg38 C3N-00435 CCRCC miRNA-Seq tumor CPT0017850006 9bc4abf6-ef04-4d2f-ae84-af0a2dc440b4_mirnaseq_gdc_realn.bam 237293086 BAM harmonized CPTAC3 4d3cd35c-87e0-4c91-8746-329a0ffbe5b2 2222ae22606162ac604b8f7e73d3f2f6 { 'aliquot_tag': 'ALQ_dc1ac9f5', 'gdc_sample_type': 'Primary Tumor' } C3N-00435.RNA-Seq.chimeric.A.hg38 C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 17e80816-173c-4795-a8c7-b002c2c90339.rna_seq.chimeric.gdc_realn.bam 55328761 BAM chimeric harmonized CPTAC3 bcc1dc01-60b8-499a-b2a6-963101e0a869 6195e7bdf7acdcbbcbc4247485418e73 { 'aliquot_tag': 'ALQ_8bc99a7a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00435.RNA-Seq.chimeric.T.hg38 C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 6cedd683-99dd-4659-9484-4d39d0d27238.rna_seq.chimeric.gdc_realn.bam 89125504 BAM chimeric harmonized CPTAC3 445cc183-ed85-40e2-b32b-f9701a0a8ab5 860fa349a2243aa4864c859630948d9a { 'aliquot_tag': 'ALQ_dc1ac9f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00435.RNA-Seq.genomic.A.hg38 C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 17e80816-173c-4795-a8c7-b002c2c90339.rna_seq.genomic.gdc_realn.bam 9061840231 BAM genomic harmonized CPTAC3 2b8b0d6c-2180-48eb-90a8-859e5cb74610 43b5076dac9d8b72fdafcf329504b6f7 { 'aliquot_tag': 'ALQ_8bc99a7a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00435.RNA-Seq.genomic.T.hg38 C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 6cedd683-99dd-4659-9484-4d39d0d27238.rna_seq.genomic.gdc_realn.bam 13705381160 BAM genomic harmonized CPTAC3 76777038-d44c-4f04-bdef-1039c1e5bfea 29c4ba56fdbfa6441dac0d6b110be1bb { 'aliquot_tag': 'ALQ_dc1ac9f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00435.RNA-Seq.R1_L004.A C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 171212_UNC31-K00269_0102_AHN5MMBBXX_GGCTAC_S15_L004_R1_001.fastq.gz 3947849920 FASTQ R1_L004 unaligned CPTAC3 b8cc1b1d-0fca-45a7-badd-da4b3b0ea844 d1a091b13ef439b1833150f1cbf77fd3 { 'aliquot_tag': 'ALQ_8bc99a7a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00435.RNA-Seq.R1_L005.T C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 7003239286 FASTQ R1_L005 unaligned CPTAC3 15172d81-3595-4a42-bf38-ba8b6eee0e8b 167c537035db6f318fc23558360916c8 { 'aliquot_tag': 'ALQ_dc1ac9f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00435.RNA-Seq.R2_L004.A C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 171212_UNC31-K00269_0102_AHN5MMBBXX_GGCTAC_S15_L004_R2_001.fastq.gz 4365134017 FASTQ R2_L004 unaligned CPTAC3 cf060020-f277-4eab-8e73-df7259e810eb 2a743b25f97929403739d5c93106e09e { 'aliquot_tag': 'ALQ_8bc99a7a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00435.RNA-Seq.R2_L005.T C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 7286704957 FASTQ R2_L005 unaligned CPTAC3 483487b6-8ad1-4d26-906d-72991fdb0324 666514b1e78041e750f30a1c1bf8a7df { 'aliquot_tag': 'ALQ_dc1ac9f5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00435.RNA-Seq.genomic.A.hg38 C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 17e80816-173c-4795-a8c7-b002c2c90339.rna_seq.genomic.gdc_realn.bam 9061840231 BAM genomic harmonized CPTAC3 a72e6609-6815-48c5-a388-4f1c0580b09c 43b5076dac9d8b72fdafcf329504b6f7 { 'aliquot_tag': 'ALQ_8bc99a7a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00435.RNA-Seq.genomic.T.hg38 C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 6cedd683-99dd-4659-9484-4d39d0d27238.rna_seq.genomic.gdc_realn.bam 13705381160 BAM genomic harmonized CPTAC3 ff0652cc-3fe0-4bb3-b999-8b3dd8f860ba 29c4ba56fdbfa6441dac0d6b110be1bb { 'aliquot_tag': 'ALQ_dc1ac9f5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00435.RNA-Seq.R1_L004.A C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 171212_UNC31-K00269_0102_AHN5MMBBXX_GGCTAC_S15_L004_R1_001.fastq.gz 3947849920 FASTQ R1_L004 unaligned CPTAC3 b8cc1b1d-0fca-45a7-badd-da4b3b0ea844 d1a091b13ef439b1833150f1cbf77fd3 { 'aliquot_tag': 'ALQ_8bc99a7a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-00435.RNA-Seq.R1_L005.T C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 7003239286 FASTQ R1_L005 unaligned CPTAC3 15172d81-3595-4a42-bf38-ba8b6eee0e8b 167c537035db6f318fc23558360916c8 { 'aliquot_tag': 'ALQ_dc1ac9f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00435.RNA-Seq.R2_L004.A C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 171212_UNC31-K00269_0102_AHN5MMBBXX_GGCTAC_S15_L004_R2_001.fastq.gz 4365134017 FASTQ R2_L004 unaligned CPTAC3 cf060020-f277-4eab-8e73-df7259e810eb 2a743b25f97929403739d5c93106e09e { 'aliquot_tag': 'ALQ_8bc99a7a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-00435.RNA-Seq.R2_L005.T C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 170823_UNC31-K00269_0076_BHLCTFBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 7286704957 FASTQ R2_L005 unaligned CPTAC3 483487b6-8ad1-4d26-906d-72991fdb0324 666514b1e78041e750f30a1c1bf8a7df { 'aliquot_tag': 'ALQ_dc1ac9f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00435.RNA-Seq.transcriptome.A.hg38 C3N-00435 CCRCC RNA-Seq tissue_normal CPT0018250006 17e80816-173c-4795-a8c7-b002c2c90339.rna_seq.transcriptome.gdc_realn.bam 9071766845 BAM transcriptome harmonized CPTAC3 2e257014-68d3-4246-910d-eeeaec85e62d 6e83a967fa01b8e0c343ec1d89716521 { 'aliquot_tag': 'ALQ_8bc99a7a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00435.RNA-Seq.transcriptome.T.hg38 C3N-00435 CCRCC RNA-Seq tumor CPT0017850006 6cedd683-99dd-4659-9484-4d39d0d27238.rna_seq.transcriptome.gdc_realn.bam 19219107554 BAM transcriptome harmonized CPTAC3 9f426c9b-0b79-455f-93e5-33578b95587b 0832c78cc1926df604b633263ddc373e { 'aliquot_tag': 'ALQ_dc1ac9f5', 'gdc_sample_type': 'Primary Tumor' } C3N-00435.WGS.A C3N-00435 CCRCC WGS tissue_normal CPT0018250009 CPT0018250009.WholeGenome.RP-1303.bam 61739430767 BAM aligned CPTAC3 2ce30c2c-110a-4431-bc4b-44b9dbf03ea0 b2fffd5f6de10ac40ae3ab9ed073ebf4 { 'aliquot_tag': 'ALQ_1b7687eb', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20781,11 +22549,11 @@ C3N-00436.miRNA-Seq.T.hg38 C3N-00436 PDA miRNA-Seq tumor CPT0077860009 de92920b- C3N-00436.RNA-Seq.chimeric.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 aad40469-8daf-4bbf-a199-c4025461ccae.rna_seq.chimeric.gdc_realn.bam 28292611 BAM chimeric harmonized CPTAC3 18ac9dbd-3394-4fc3-b0ae-8d6224dbbb93 ce8a7c870244b074e561baae71999b5f { 'aliquot_tag': 'ALQ_725a1952', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00436.RNA-Seq.chimeric.T.hg38 C3N-00436 PDA RNA-Seq tumor CPT0077860009 9ff18968-1df8-42cf-a7c5-0d9c1eab7a59.rna_seq.chimeric.gdc_realn.bam 50089637 BAM chimeric harmonized CPTAC3 9cfc9a40-ede8-452a-9028-f20b82d04bf4 3743239ef0d41b5db6c29bcc823fea33 { 'aliquot_tag': 'ALQ_cd6aa733', 'gdc_sample_type': 'Primary Tumor' } C3N-00436.RNA-Seq.genomic.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 aad40469-8daf-4bbf-a199-c4025461ccae.rna_seq.genomic.gdc_realn.bam 8451230046 BAM genomic harmonized CPTAC3 fc2ab034-a761-40eb-a567-e48c08f6716c 4afb98fa26e6ef77f5133443af6d9c71 { 'aliquot_tag': 'ALQ_725a1952', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00436.RNA-Seq.genomic.T.hg38 C3N-00436 PDA RNA-Seq tumor CPT0077860009 9ff18968-1df8-42cf-a7c5-0d9c1eab7a59.rna_seq.genomic.gdc_realn.bam 9119909784 BAM genomic harmonized CPTAC3 cb1dbfc3-d8e3-4837-a6a3-d126740afc85 0d03e52ebcb3a83e3a3f042de076ff7a { 'aliquot_tag': 'ALQ_cd6aa733', 'gdc_sample_type': 'Primary Tumor' } -C3N-00436.RNA-Seq.R1_L003.A C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3322009050 FASTQ R1_L003 unaligned CPTAC3 c61650b4-8e2b-4610-87a2-f37dca36095e becb83fe63bf4b61b4658333156b42bc { 'aliquot_tag': 'ALQ_725a1952', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00436.RNA-Seq.R1_L008.T C3N-00436 PDA RNA-Seq tumor CPT0077860009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 4338613527 FASTQ R1_L008 unaligned CPTAC3 b3772a9b-6281-46fd-bdb2-c3a3e4f58d9c 1c2b70550ea7cebdad08ec3af94f6604 { 'aliquot_tag': 'ALQ_cd6aa733', 'gdc_sample_type': 'Primary Tumor' } -C3N-00436.RNA-Seq.R2_L003.A C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L003_R2_001.fastq.gz 3743308271 FASTQ R2_L003 unaligned CPTAC3 69dd24b9-3215-4514-a47c-65525a18fb1e ca140feef1d5ce7a43faeb68d40d26f8 { 'aliquot_tag': 'ALQ_725a1952', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00436.RNA-Seq.R2_L008.T C3N-00436 PDA RNA-Seq tumor CPT0077860009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 4775497389 FASTQ R2_L008 unaligned CPTAC3 26f6d911-3b74-4d7b-b299-6a40d33b6d5e f3e728590d82e7fff578c6c28771dd1d { 'aliquot_tag': 'ALQ_cd6aa733', 'gdc_sample_type': 'Primary Tumor' } +C3N-00436.RNA-Seq.genomic.T.hg38 C3N-00436 PDA RNA-Seq tumor CPT0077860009 9ff18968-1df8-42cf-a7c5-0d9c1eab7a59.rna_seq.genomic.gdc_realn.bam 9119909784 BAM genomic harmonized CPTAC3 09b915c1-0407-4268-a0fd-ee74e4c23640 0d03e52ebcb3a83e3a3f042de076ff7a { 'aliquot_tag': 'ALQ_cd6aa733', 'gdc_sample_type': 'Primary Tumor' } +C3N-00436.RNA-Seq.R1_L003.A C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L003_R1_001.fastq.gz 3322009050 FASTQ R1_L003 unaligned CPTAC3 c61650b4-8e2b-4610-87a2-f37dca36095e becb83fe63bf4b61b4658333156b42bc { 'aliquot_tag': 'ALQ_725a1952', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-00436.RNA-Seq.R1_L008.T C3N-00436 PDA RNA-Seq tumor CPT0077860009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 4338613527 FASTQ R1_L008 unaligned CPTAC3 b3772a9b-6281-46fd-bdb2-c3a3e4f58d9c 1c2b70550ea7cebdad08ec3af94f6604 { 'aliquot_tag': 'ALQ_cd6aa733', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00436.RNA-Seq.R2_L003.A C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 180516_UNC31-K00269_0129_AHTWLFBBXX_TTAGGC_S10_L003_R2_001.fastq.gz 3743308271 FASTQ R2_L003 unaligned CPTAC3 69dd24b9-3215-4514-a47c-65525a18fb1e ca140feef1d5ce7a43faeb68d40d26f8 { 'aliquot_tag': 'ALQ_725a1952', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-00436.RNA-Seq.R2_L008.T C3N-00436 PDA RNA-Seq tumor CPT0077860009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 4775497389 FASTQ R2_L008 unaligned CPTAC3 26f6d911-3b74-4d7b-b299-6a40d33b6d5e f3e728590d82e7fff578c6c28771dd1d { 'aliquot_tag': 'ALQ_cd6aa733', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00436.RNA-Seq.transcriptome.A.hg38 C3N-00436 PDA RNA-Seq tissue_normal CPT0077880009 aad40469-8daf-4bbf-a199-c4025461ccae.rna_seq.transcriptome.gdc_realn.bam 10449415801 BAM transcriptome harmonized CPTAC3 ff34d7c8-6e22-4e80-a900-edea559cb02a 8de69e723b66739526c2d061a24958ec { 'aliquot_tag': 'ALQ_725a1952', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00436.RNA-Seq.transcriptome.T.hg38 C3N-00436 PDA RNA-Seq tumor CPT0077860009 9ff18968-1df8-42cf-a7c5-0d9c1eab7a59.rna_seq.transcriptome.gdc_realn.bam 12834584094 BAM transcriptome harmonized CPTAC3 e7c72fac-98e3-4afd-92c4-72554426de5f 9b2682f01d7f57dd78f0dbacd5ebabd8 { 'aliquot_tag': 'ALQ_cd6aa733', 'gdc_sample_type': 'Primary Tumor' } C3N-00436.WGS.A C3N-00436 PDA WGS tissue_normal CPT0077880006 CPT0077880006.WholeGenome.RP-1303.bam 60900793757 BAM aligned CPTAC3 072c48c4-473c-4a11-8b5d-c2528aced63e 52f39b2b7fd1237fe59d4ec442aa2351 { 'aliquot_tag': 'ALQ_e2e504c3', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20811,16 +22579,16 @@ C3N-00437.DUP_85641b28.WXS.T.hg38 C3N-00437 CCRCC WXS tumor CPT0012560010 719142 C3N-00437.DUP_92a4a25b.miRNA-Seq.T C3N-00437 CCRCC miRNA-Seq tumor CPT0012560008 201209_UNC32-K00270_0265_AHJ55WBBXY_TCGAAG_S20_L006_R1_001.unaln.bam 302618730 BAM unaligned CPTAC3 9386465d-7b9e-42da-b20e-6956658c1b97 bfa513e573e55e4e2bb226ba63a8f02d { 'aliquot_tag': 'DUP_92a4a25b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00437.DUP_92a4a25b.miRNA-Seq.T.hg38 C3N-00437 CCRCC miRNA-Seq tumor CPT0012560008 332fc9ba-1bd9-456f-9069-0429decc4ee2_mirnaseq_gdc_realn.bam 325471898 BAM harmonized CPTAC3 b5ad1126-a875-4f9f-8e49-1793df4d1fd1 fcb34d29278f47e31284d9530caa53d0 { 'aliquot_tag': 'DUP_92a4a25b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00437.DUP_92a4a25b.RNA-Seq.chimeric.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 f9787b6f-960b-4923-b061-465e6937e2eb.rna_seq.chimeric.gdc_realn.bam 116368411 BAM chimeric harmonized CPTAC3 9a81fb6a-d2fa-4c46-acd9-0d2be5f19094 4060306583e9db1a23409a121a48a3b7 { 'aliquot_tag': 'DUP_92a4a25b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00437.DUP_92a4a25b.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 f9787b6f-960b-4923-b061-465e6937e2eb.rna_seq.genomic.gdc_realn.bam 7728746934 BAM genomic harmonized CPTAC3 eec02bef-1eef-4f47-99a7-98a5b4750dc5 87dcc71182ad09d6ad5f406c18fb5ab7 { 'aliquot_tag': 'DUP_92a4a25b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00437.DUP_92a4a25b.RNA-Seq.R1_L004.T C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 200518_UNC32-K00270_0247_AHH573BBXY_TTATAACC-GATATCGA_S31_L004_R1_001.fastq.gz 3754763821 FASTQ R1_L004 unaligned CPTAC3 9ece06e8-9b6d-449b-b2a5-28cf31463fa6 0f787999e7f1e27bb23118ed22dbd8f0 { 'aliquot_tag': 'DUP_92a4a25b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00437.DUP_92a4a25b.RNA-Seq.R2_L004.T C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 200518_UNC32-K00270_0247_AHH573BBXY_TTATAACC-GATATCGA_S31_L004_R2_001.fastq.gz 4032261994 FASTQ R2_L004 unaligned CPTAC3 221c7dfb-25d0-4adb-91bb-6e3c82fb6016 f68316bc63dd4b53ae0911c12261f915 { 'aliquot_tag': 'DUP_92a4a25b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00437.DUP_92a4a25b.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 f9787b6f-960b-4923-b061-465e6937e2eb.rna_seq.genomic.gdc_realn.bam 7728746934 BAM genomic harmonized CPTAC3 a655e51c-b909-4b5a-8c5c-4e47964a1a15 87dcc71182ad09d6ad5f406c18fb5ab7 { 'aliquot_tag': 'DUP_92a4a25b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00437.DUP_92a4a25b.RNA-Seq.R1_L004.T C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 200518_UNC32-K00270_0247_AHH573BBXY_TTATAACC-GATATCGA_S31_L004_R1_001.fastq.gz 3754763821 FASTQ R1_L004 unaligned CPTAC3 9ece06e8-9b6d-449b-b2a5-28cf31463fa6 0f787999e7f1e27bb23118ed22dbd8f0 { 'aliquot_tag': 'DUP_92a4a25b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3N-00437.DUP_92a4a25b.RNA-Seq.R2_L004.T C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 200518_UNC32-K00270_0247_AHH573BBXY_TTATAACC-GATATCGA_S31_L004_R2_001.fastq.gz 4032261994 FASTQ R2_L004 unaligned CPTAC3 221c7dfb-25d0-4adb-91bb-6e3c82fb6016 f68316bc63dd4b53ae0911c12261f915 { 'aliquot_tag': 'DUP_92a4a25b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3N-00437.DUP_92a4a25b.RNA-Seq.transcriptome.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012560008 f9787b6f-960b-4923-b061-465e6937e2eb.rna_seq.transcriptome.gdc_realn.bam 10757804779 BAM transcriptome harmonized CPTAC3 37e56a37-fd84-4983-a933-5cdd445309b3 919fecddad387673ffde345bb5baeb7d { 'aliquot_tag': 'DUP_92a4a25b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00437.DUP_9f63c1ad.miRNA-Seq.T C3N-00437 CCRCC miRNA-Seq tumor CPT0012540009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L002_R1_001.unaln.bam 235656830 BAM unaligned CPTAC3 4e17be1f-f47c-4e35-8205-bd4eb0f1f9f3 b0649da7954e8bfe3d581042f0e9507e { 'aliquot_tag': 'DUP_9f63c1ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00437.DUP_9f63c1ad.miRNA-Seq.T.hg38 C3N-00437 CCRCC miRNA-Seq tumor CPT0012540009 aa4f8bc2-c67f-4631-9080-730d295a6215_mirnaseq_gdc_realn.bam 258404200 BAM harmonized CPTAC3 cf312980-ca77-4f3d-8f71-403c141584f5 66f016da58cee2463aceee49203a567c { 'aliquot_tag': 'DUP_9f63c1ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00437.DUP_9f63c1ad.RNA-Seq.chimeric.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 0c9fe629-00c7-4321-ac8c-4d397becfeb1.rna_seq.chimeric.gdc_realn.bam 41457552 BAM chimeric harmonized CPTAC3 d5c1ab46-475b-4351-813d-3a42b23bf968 502d0fba3810c3f9c55b6756e85eda66 { 'aliquot_tag': 'DUP_9f63c1ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00437.DUP_9f63c1ad.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 0c9fe629-00c7-4321-ac8c-4d397becfeb1.rna_seq.genomic.gdc_realn.bam 8291733349 BAM genomic harmonized CPTAC3 c3cf6bb3-48d7-40c2-a7d1-b3accce60e53 f2cf44545f9bdab6105b02ab087ce5c3 { 'aliquot_tag': 'DUP_9f63c1ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00437.DUP_9f63c1ad.RNA-Seq.R1_L004.T C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 200519_UNC31-K00269_0280_BHHKGNBBXY_GTGTCGGA-GCTTGCGC_S15_L004_R1_001.fastq.gz 3625423624 FASTQ R1_L004 unaligned CPTAC3 234117c5-dbee-4918-b6c1-59c141a0f5d9 90d25f10339beff1b837a92442370184 { 'aliquot_tag': 'DUP_9f63c1ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00437.DUP_9f63c1ad.RNA-Seq.R2_L004.T C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 200519_UNC31-K00269_0280_BHHKGNBBXY_GTGTCGGA-GCTTGCGC_S15_L004_R2_001.fastq.gz 4304549373 FASTQ R2_L004 unaligned CPTAC3 144761fd-fe29-4261-98e1-8df138e611cd 77d5a205156708650b147520a0d54567 { 'aliquot_tag': 'DUP_9f63c1ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00437.DUP_9f63c1ad.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 0c9fe629-00c7-4321-ac8c-4d397becfeb1.rna_seq.genomic.gdc_realn.bam 8291733349 BAM genomic harmonized CPTAC3 ae4d3899-9a37-4206-9443-766c70e9bb80 f2cf44545f9bdab6105b02ab087ce5c3 { 'aliquot_tag': 'DUP_9f63c1ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00437.DUP_9f63c1ad.RNA-Seq.R1_L004.T C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 200519_UNC31-K00269_0280_BHHKGNBBXY_GTGTCGGA-GCTTGCGC_S15_L004_R1_001.fastq.gz 3625423624 FASTQ R1_L004 unaligned CPTAC3 234117c5-dbee-4918-b6c1-59c141a0f5d9 90d25f10339beff1b837a92442370184 { 'aliquot_tag': 'DUP_9f63c1ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3N-00437.DUP_9f63c1ad.RNA-Seq.R2_L004.T C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 200519_UNC31-K00269_0280_BHHKGNBBXY_GTGTCGGA-GCTTGCGC_S15_L004_R2_001.fastq.gz 4304549373 FASTQ R2_L004 unaligned CPTAC3 144761fd-fe29-4261-98e1-8df138e611cd 77d5a205156708650b147520a0d54567 { 'aliquot_tag': 'DUP_9f63c1ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3N-00437.DUP_9f63c1ad.RNA-Seq.transcriptome.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012540009 0c9fe629-00c7-4321-ac8c-4d397becfeb1.rna_seq.transcriptome.gdc_realn.bam 9846340222 BAM transcriptome harmonized CPTAC3 58155458-a43a-4b34-8f33-12b1c09ee45a e4bacafba45e4d43cdc9f28cfd09f05b { 'aliquot_tag': 'DUP_9f63c1ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00437.DUP_fdcdc3c.MethArray.Green.T C3N-00437 CCRCC Methylation Array tumor CPT0012540006 204367490029_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0d0c6f62-d319-4b8c-8008-4db5e7bdc13b 6d602bad61b3195eacb758e869b54286 { 'aliquot_tag': 'DUP_fdcdc3c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00437.DUP_fdcdc3c.MethArray.Red.T C3N-00437 CCRCC Methylation Array tumor CPT0012540006 204367490029_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 ac6af806-1947-4ab8-b2d3-76851222287e af93fedd4826369c9600ed0f2ba5c815 { 'aliquot_tag': 'DUP_fdcdc3c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -20835,9 +22603,9 @@ C3N-00437.MethArray.Red.T C3N-00437 CCRCC Methylation Array tumor CPT0012550008 C3N-00437.miRNA-Seq.T C3N-00437 CCRCC miRNA-Seq tumor CPT0012550006 180924_UNC31-K00269_0154_AHWTMLBBXX_CACCGG_S41_L002_R1_001.unaln.bam 270101613 BAM unaligned CPTAC3 f4fb1bc7-28df-4e3a-bfe3-f995d38aaf24 fd4d3a93631d5990ded8ae2df0fc1bdf { 'aliquot_tag': 'ALQ_32bcf58c', 'gdc_sample_type': 'Primary Tumor' } C3N-00437.miRNA-Seq.T.hg38 C3N-00437 CCRCC miRNA-Seq tumor CPT0012550006 0cc646da-cd28-4839-a3ee-0403750b9afd_mirnaseq_gdc_realn.bam 296835071 BAM harmonized CPTAC3 effa6589-8519-422b-830b-9a0e1c38cf9a a89c3c0f62b15f107f7844f4a95d0a8a { 'aliquot_tag': 'ALQ_32bcf58c', 'gdc_sample_type': 'Primary Tumor' } C3N-00437.RNA-Seq.chimeric.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 2c2a734b-33a2-499f-b364-ae77fca5abcc.rna_seq.chimeric.gdc_realn.bam 72977355 BAM chimeric harmonized CPTAC3 84a9f958-2476-43b0-8d1b-66d82d0c4045 f08df8dedcafce4ce33bafd7ab7cb0d8 { 'aliquot_tag': 'ALQ_32bcf58c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00437.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 2c2a734b-33a2-499f-b364-ae77fca5abcc.rna_seq.genomic.gdc_realn.bam 9669935407 BAM genomic harmonized CPTAC3 71fe595c-bbbc-473c-b715-09e32079c921 287345e8670e8dc21de9790d357cc73d { 'aliquot_tag': 'ALQ_32bcf58c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00437.RNA-Seq.R1_L005.T C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L005_R1_001.fastq.gz 4652417529 FASTQ R1_L005 unaligned CPTAC3 b7908b71-b7fa-45ce-bde6-a99a873c5759 cb03bbc425ea827a0f42b44e6d8e5295 { 'aliquot_tag': 'ALQ_32bcf58c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00437.RNA-Seq.R2_L005.T C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L005_R2_001.fastq.gz 4976163068 FASTQ R2_L005 unaligned CPTAC3 21aa8b4d-b7a4-4d24-8edf-b9fc75b24f41 b7d2365225dc0c00e26de0a9ff61d17d { 'aliquot_tag': 'ALQ_32bcf58c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00437.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 2c2a734b-33a2-499f-b364-ae77fca5abcc.rna_seq.genomic.gdc_realn.bam 9669935407 BAM genomic harmonized CPTAC3 08dc4815-8d24-4c09-8fe8-14ea1416e06d 287345e8670e8dc21de9790d357cc73d { 'aliquot_tag': 'ALQ_32bcf58c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00437.RNA-Seq.R1_L005.T C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L005_R1_001.fastq.gz 4652417529 FASTQ R1_L005 unaligned CPTAC3 b7908b71-b7fa-45ce-bde6-a99a873c5759 cb03bbc425ea827a0f42b44e6d8e5295 { 'aliquot_tag': 'ALQ_32bcf58c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00437.RNA-Seq.R2_L005.T C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L005_R2_001.fastq.gz 4976163068 FASTQ R2_L005 unaligned CPTAC3 21aa8b4d-b7a4-4d24-8edf-b9fc75b24f41 b7d2365225dc0c00e26de0a9ff61d17d { 'aliquot_tag': 'ALQ_32bcf58c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00437.RNA-Seq.transcriptome.T.hg38 C3N-00437 CCRCC RNA-Seq tumor CPT0012550006 2c2a734b-33a2-499f-b364-ae77fca5abcc.rna_seq.transcriptome.gdc_realn.bam 13224294905 BAM transcriptome harmonized CPTAC3 1707d01f-b5b5-4399-b4af-0e13ec77d9b9 eee537a470c2101f3e5270dc99bdf60d { 'aliquot_tag': 'ALQ_32bcf58c', 'gdc_sample_type': 'Primary Tumor' } C3N-00437.WGS.A C3N-00437 CCRCC WGS tissue_normal CPT0012570009 CPT0012570009.WholeGenome.RP-1303.bam 66638247936 BAM aligned CPTAC3 c7b2ed32-9221-4de8-90f6-8b2a40a4f627 01d2c15c1cadf3856ac1afb034a0795e { 'aliquot_tag': 'ALQ_d8c3bb7d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00437.WGS.A.hg38 C3N-00437 CCRCC WGS tissue_normal CPT0012570009 044f57af-6c7b-4e34-8820-cbba46ebfb0c_wgs_gdc_realn.bam 98395098606 BAM harmonized CPTAC3 e6dfbbc9-226c-4084-ba47-d99816424306 3a1b88b50cf1d80cc29b92c1686a5232 { 'aliquot_tag': 'ALQ_d8c3bb7d', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20855,11 +22623,11 @@ C3N-00438.MethArray.Green.T C3N-00438 CCRCC Methylation Array tumor CPT037943000 C3N-00438.MethArray.Red.T C3N-00438 CCRCC Methylation Array tumor CPT0379430007 205589740003_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 a60dae0c-0b24-467f-b9d8-8e3d9490fab3 8c57ccc8408323ccbd6f8af8d1dc9b60 { 'aliquot_tag': 'ALQ_fc4282a7', 'gdc_sample_type': 'Primary Tumor' } C3N-00438.miRNA-Seq.T C3N-00438 CCRCC miRNA-Seq tumor CPT0379430010 210111_UNC32-K00270_0270_AHJ5LKBBXY_GACGAC_S31_L003_R1_001.unaln.bam 296769466 BAM unaligned CPTAC3 f359066a-ad68-4afc-b8cc-ac933126a5d5 777bdcb38dd6fdf2951973561a5555df { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor' } C3N-00438.miRNA-Seq.T.hg38 C3N-00438 CCRCC miRNA-Seq tumor CPT0379430010 49e4238d-97a3-4619-84d3-123c6d98454e_mirnaseq_gdc_realn.bam 313420359 BAM harmonized CPTAC3 a6a1db3b-9b04-420c-8c85-1d77c15660ac 9a0575237f21b8d36a4ec60e1c1d70a5 { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor' } -C3N-00438.RNA-Seq.chimeric.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 81e5d159-e936-415b-a4f4-65b204ee5fef.rna_seq.chimeric.gdc_realn.bam 169202960 BAM chimeric harmonized CPTAC3 fd360ca4-726a-4946-92f3-ec092d6c63ca f87b822ca0f5587b5397605a6984cc43 { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor' } -C3N-00438.RNA-Seq.genomic.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 81e5d159-e936-415b-a4f4-65b204ee5fef.rna_seq.genomic.gdc_realn.bam 7769619984 BAM genomic harmonized CPTAC3 f9b74d19-9a89-4a0f-9e4c-10aa1a00324c c79a92ca2e4c4b6e012105f9a072c6e4 { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor' } -C3N-00438.RNA-Seq.R1_L005.T C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATCTCG-ATCTTAGT_S15_L005_R1_001.fastq.gz 3922735352 FASTQ R1_L005 unaligned CPTAC3 9210d9a2-1799-4811-9bf5-5ebeb3ec344f 9fb19271831252475f03c6b31e5bd6f8 { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor' } -C3N-00438.RNA-Seq.R2_L005.T C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATCTCG-ATCTTAGT_S15_L005_R2_001.fastq.gz 4212708708 FASTQ R2_L005 unaligned CPTAC3 75659dbc-4d83-4323-86a9-a732e2e721d7 8f1a8a22bb6d7715efdc52a8068db9fa { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor' } -C3N-00438.RNA-Seq.transcriptome.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 81e5d159-e936-415b-a4f4-65b204ee5fef.rna_seq.transcriptome.gdc_realn.bam 9357876130 BAM transcriptome harmonized CPTAC3 bc2e1c4d-e775-4a7f-9a2e-16a2bbb72737 3563bc7114e47d4d67ed65aab40df640 { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor' } +C3N-00438.RNA-Seq.chimeric.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 1c556f27-79af-4873-8ee1-147f5a1bef3e.rna_seq.chimeric.gdc_realn.bam 169194204 BAM chimeric harmonized CPTAC3 fa586c68-63cf-4fe2-8aa9-2cbcc93bbaae 47a8d6b8797423d7fecda66765132487 { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor' } +C3N-00438.RNA-Seq.genomic.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 1c556f27-79af-4873-8ee1-147f5a1bef3e.rna_seq.genomic.gdc_realn.bam 7776648600 BAM genomic harmonized CPTAC3 f24d86ec-55b2-4e87-80be-01c378787f01 54b6ccd6f46e9e465ed05e25aa740923 { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor' } +C3N-00438.RNA-Seq.R1_L005.T C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATCTCG-ATCTTAGT_S15_L005_R1_001.fastq.gz 3922735352 FASTQ R1_L005 unaligned CPTAC3 9210d9a2-1799-4811-9bf5-5ebeb3ec344f 9fb19271831252475f03c6b31e5bd6f8 { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00438.RNA-Seq.R2_L005.T C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 210105_UNC32-K00270_0268_AHK7HMBBXY_ATATCTCG-ATCTTAGT_S15_L005_R2_001.fastq.gz 4212708708 FASTQ R2_L005 unaligned CPTAC3 75659dbc-4d83-4323-86a9-a732e2e721d7 8f1a8a22bb6d7715efdc52a8068db9fa { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00438.RNA-Seq.transcriptome.T.hg38 C3N-00438 CCRCC RNA-Seq tumor CPT0379430010 1c556f27-79af-4873-8ee1-147f5a1bef3e.rna_seq.transcriptome.gdc_realn.bam 10779869644 BAM transcriptome harmonized CPTAC3 b6f909b4-210d-4cf5-a5ee-d4e3681d644b 080aebce28cac4198dcac5c085cef6de { 'aliquot_tag': 'ALQ_7b3d2645', 'gdc_sample_type': 'Primary Tumor' } C3N-00438.WGS.N C3N-00438 CCRCC WGS blood_normal CPT0379460002 CPT0379460002.WholeGenome.RP-2158.bam 25860061714 BAM aligned CPTAC3 0046a886-4dd0-4b02-94ce-43ed3e7e5ada 87339751b7a6eeeee40554a53ed87a2c { 'aliquot_tag': 'ALQ_44c8f958', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00438.WGS.N.hg38 C3N-00438 CCRCC WGS blood_normal CPT0379460002 684074a3-34eb-4056-ae6d-1746fd762208_wgs_gdc_realn.bam 78548658835 BAM harmonized CPTAC3 b2c12667-2d5d-4f4d-a78b-ca3261e10110 942d7aa74780d208f0d5e453557c01e3 { 'aliquot_tag': 'ALQ_44c8f958', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00438.WGS.T C3N-00438 CCRCC WGS tumor CPT0379430007 CPT0379430007.WholeGenome.RP-2158.bam 31052675736 BAM aligned CPTAC3 cefff43d-3ad9-4eea-a8de-608bc79bb8c7 821e4aa06ebc447c526dd379a0eb3e8f { 'aliquot_tag': 'ALQ_fc4282a7', 'gdc_sample_type': 'Primary Tumor' } @@ -20874,11 +22642,11 @@ C3N-00439.MethArray.Red.A C3N-00439 CCRCC Methylation Array tissue_normal CPT037 C3N-00439.MethArray.Red.T C3N-00439 CCRCC Methylation Array tumor CPT0379480010 205555380161_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 d35a042c-81a2-4145-aa71-4aadf9160a74 e54722de86f6e511920d973707df5fcc { 'aliquot_tag': 'ALQ_ced1754', 'gdc_sample_type': 'Primary Tumor' } C3N-00439.miRNA-Seq.T C3N-00439 CCRCC miRNA-Seq tumor CPT0379480007 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCGAAG_S37_L003_R1_001.unaln.bam 350454256 BAM unaligned CPTAC3 da88d0a5-45c0-4c3b-a43b-0efe761e48cf b3ef15c7fe3f8f054f9ca0e98bf73ce9 { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor' } C3N-00439.miRNA-Seq.T.hg38 C3N-00439 CCRCC miRNA-Seq tumor CPT0379480007 d1e7532c-3928-4eeb-bdeb-2c9257da9043_mirnaseq_gdc_realn.bam 376592677 BAM harmonized CPTAC3 3faad217-423d-4e56-92d3-860a853daf6f 0283c8834319682e46c061a2546253a0 { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00439.RNA-Seq.chimeric.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 d016713d-26c4-421f-a57b-b6009189307c.rna_seq.chimeric.gdc_realn.bam 239268525 BAM chimeric harmonized CPTAC3 ce687356-105b-46e3-a4bf-f6ea4d840d57 77d7bd0c302bce131c20dbb13efa5dbd { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00439.RNA-Seq.genomic.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 d016713d-26c4-421f-a57b-b6009189307c.rna_seq.genomic.gdc_realn.bam 7769348037 BAM genomic harmonized CPTAC3 46bb4481-6c15-46ed-b3ee-3b33a60c9f7e 868e551523534c56c1c27c427b2825b3 { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00439.RNA-Seq.R1_L004.T C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 210105_UNC32-K00270_0268_AHK7HMBBXY_AGGCAGAG-AGAATGCC_S10_L004_R1_001.fastq.gz 3476102077 FASTQ R1_L004 unaligned CPTAC3 d8da199c-0cc2-4309-bc89-fe4b9c98fab7 31c355e5c168182488e293475ec7fe99 { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00439.RNA-Seq.R2_L004.T C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 210105_UNC32-K00270_0268_AHK7HMBBXY_AGGCAGAG-AGAATGCC_S10_L004_R2_001.fastq.gz 3876391287 FASTQ R2_L004 unaligned CPTAC3 1b720778-8404-4f33-a358-821f2e4f9777 8c8c00abcf8dcab501829f87df3984d7 { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00439.RNA-Seq.transcriptome.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 d016713d-26c4-421f-a57b-b6009189307c.rna_seq.transcriptome.gdc_realn.bam 5604332187 BAM transcriptome harmonized CPTAC3 1ff25daf-e5a6-4023-973c-8bc0869c99ed 0b0ff375a8a185116373601c5b3054ea { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00439.RNA-Seq.chimeric.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 88009e00-3658-4f44-86b4-dec5ebb3c034.rna_seq.chimeric.gdc_realn.bam 239250074 BAM chimeric harmonized CPTAC3 717ebbb6-31f2-4e3e-9911-5e6af769fe74 14899df8548c3710966576eb9ea57518 { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00439.RNA-Seq.genomic.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 88009e00-3658-4f44-86b4-dec5ebb3c034.rna_seq.genomic.gdc_realn.bam 7774010010 BAM genomic harmonized CPTAC3 2851ce19-7348-49d3-8f06-ec261d3e27ff 2d500d1d081a3ff8f904601478abf0d3 { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00439.RNA-Seq.R1_L004.T C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 210105_UNC32-K00270_0268_AHK7HMBBXY_AGGCAGAG-AGAATGCC_S10_L004_R1_001.fastq.gz 3476102077 FASTQ R1_L004 unaligned CPTAC3 d8da199c-0cc2-4309-bc89-fe4b9c98fab7 31c355e5c168182488e293475ec7fe99 { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00439.RNA-Seq.R2_L004.T C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 210105_UNC32-K00270_0268_AHK7HMBBXY_AGGCAGAG-AGAATGCC_S10_L004_R2_001.fastq.gz 3876391287 FASTQ R2_L004 unaligned CPTAC3 1b720778-8404-4f33-a358-821f2e4f9777 8c8c00abcf8dcab501829f87df3984d7 { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00439.RNA-Seq.transcriptome.T.hg38 C3N-00439 CCRCC RNA-Seq tumor CPT0379480007 88009e00-3658-4f44-86b4-dec5ebb3c034.rna_seq.transcriptome.gdc_realn.bam 6343453525 BAM transcriptome harmonized CPTAC3 967d23b0-1261-4331-9f09-6def6ddc4605 d3ee234d421ad25d19565a690a5652c6 { 'aliquot_tag': 'ALQ_8b92b3b6', 'gdc_sample_type': 'Primary Tumor' } C3N-00439.WGS.N C3N-00439 CCRCC WGS blood_normal CPT0379570002 CPT0379570002.WholeGenome.RP-2158.bam 28922239242 BAM aligned CPTAC3 aa566fab-6e2c-436d-b470-eb2d53002255 cfdf45675574c5d997ab5777e1faf8d7 { 'aliquot_tag': 'ALQ_b2f4034d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00439.WGS.N.hg38 C3N-00439 CCRCC WGS blood_normal CPT0379570002 9895ad60-a9ed-4923-8405-36f7bbfbac98_wgs_gdc_realn.bam 88060239999 BAM harmonized CPTAC3 159352a4-acac-430d-8389-1491f5fc1dd7 02e2b402a38bce9a5281617365a6c993 { 'aliquot_tag': 'ALQ_b2f4034d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00439.WGS.T C3N-00439 CCRCC WGS tumor CPT0379480010 CPT0379480010.WholeGenome.RP-2158.bam 32821041446 BAM aligned CPTAC3 e6af19b8-c939-44c8-b0bb-b1fec6477bfe 4cd63d82c51a304d9e47dadb16b359e1 { 'aliquot_tag': 'ALQ_ced1754', 'gdc_sample_type': 'Primary Tumor' } @@ -20893,11 +22661,11 @@ C3N-00440.MethArray.Green.T C3N-00440 CCRCC Methylation Array tumor CPT037959000 C3N-00440.MethArray.Red.T C3N-00440 CCRCC Methylation Array tumor CPT0379590007 205555390157_R03C01_Red.idat 13677955 IDAT Red NA CPTAC3 62a63f33-a05d-46ce-85c4-e93d7c8aa738 b4e669c051bd02be1632f2aee2e7ad6c { 'aliquot_tag': 'ALQ_7dae49a3', 'gdc_sample_type': 'Primary Tumor' } C3N-00440.miRNA-Seq.T C3N-00440 CCRCC miRNA-Seq tumor CPT0379590010 210111_UNC32-K00270_0270_AHJ5LKBBXY_TAATCG_S32_L003_R1_001.unaln.bam 286413272 BAM unaligned CPTAC3 c80ce0e9-a709-4347-8fff-b6c0c7aa9a0b 3622928a3f2acaa014cd5b7540a21824 { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor' } C3N-00440.miRNA-Seq.T.hg38 C3N-00440 CCRCC miRNA-Seq tumor CPT0379590010 63c7f828-b880-4837-9d33-c01dfbad5d2c_mirnaseq_gdc_realn.bam 314173712 BAM harmonized CPTAC3 e97f22a2-bda8-4625-8a1a-b2629244480a d30d6c0a3ecf6c95da80298b879697d1 { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor' } -C3N-00440.RNA-Seq.chimeric.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 cbe18d7e-c01d-4af7-bfaf-ae327476456d.rna_seq.chimeric.gdc_realn.bam 445594773 BAM chimeric harmonized CPTAC3 4a3edb11-2e17-4943-80bf-762fc18c4402 7e363903f51ce19068f6a34d667bbf19 { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor' } -C3N-00440.RNA-Seq.genomic.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 cbe18d7e-c01d-4af7-bfaf-ae327476456d.rna_seq.genomic.gdc_realn.bam 8732239183 BAM genomic harmonized CPTAC3 1adcfa6d-3633-4c72-bec0-dc74afcd3adf 6dd71272c6261b826f702d04aad5e2f5 { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor' } -C3N-00440.RNA-Seq.R1_L005.T C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCTCTA-GCTCCGAC_S16_L005_R1_001.fastq.gz 4211639778 FASTQ R1_L005 unaligned CPTAC3 0348b2b8-436b-4639-bdaf-40055f305e33 cdbcbb35e9564a0d08956a130971e354 { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor' } -C3N-00440.RNA-Seq.R2_L005.T C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCTCTA-GCTCCGAC_S16_L005_R2_001.fastq.gz 4644340351 FASTQ R2_L005 unaligned CPTAC3 5e9f02c8-b9eb-4052-a157-246587d91d0b 2a641211dd7d93c47ed49b06462a0797 { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor' } -C3N-00440.RNA-Seq.transcriptome.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 cbe18d7e-c01d-4af7-bfaf-ae327476456d.rna_seq.transcriptome.gdc_realn.bam 8368204538 BAM transcriptome harmonized CPTAC3 80cf8c21-bae5-4ec6-83d3-ced95e38a952 f2da87c5b56c9de46ddc883fe18dedca { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor' } +C3N-00440.RNA-Seq.chimeric.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 0089c036-a8ee-454b-83f0-ce998c4a5c17.rna_seq.chimeric.gdc_realn.bam 445625343 BAM chimeric harmonized CPTAC3 fdf786a6-dc56-45bf-b347-02f0fae23bea 85ab3b6c69e958e26099338d8239a0d6 { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor' } +C3N-00440.RNA-Seq.genomic.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 0089c036-a8ee-454b-83f0-ce998c4a5c17.rna_seq.genomic.gdc_realn.bam 8736395036 BAM genomic harmonized CPTAC3 2294d2a2-334e-49df-918c-c2c359f40770 c3baf874722e044cc5c915304baeb83e { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor' } +C3N-00440.RNA-Seq.R1_L005.T C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCTCTA-GCTCCGAC_S16_L005_R1_001.fastq.gz 4211639778 FASTQ R1_L005 unaligned CPTAC3 0348b2b8-436b-4639-bdaf-40055f305e33 cdbcbb35e9564a0d08956a130971e354 { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00440.RNA-Seq.R2_L005.T C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 210105_UNC32-K00270_0268_AHK7HMBBXY_GCGCTCTA-GCTCCGAC_S16_L005_R2_001.fastq.gz 4644340351 FASTQ R2_L005 unaligned CPTAC3 5e9f02c8-b9eb-4052-a157-246587d91d0b 2a641211dd7d93c47ed49b06462a0797 { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00440.RNA-Seq.transcriptome.T.hg38 C3N-00440 CCRCC RNA-Seq tumor CPT0379590010 0089c036-a8ee-454b-83f0-ce998c4a5c17.rna_seq.transcriptome.gdc_realn.bam 9544738303 BAM transcriptome harmonized CPTAC3 7042f72f-cb9a-4a5d-89cb-4ce7f74e3c7e 52270d491fdc710552f6df66e1f9c408 { 'aliquot_tag': 'ALQ_fad1ed41', 'gdc_sample_type': 'Primary Tumor' } C3N-00440.WGS.N C3N-00440 CCRCC WGS blood_normal CPT0379620002 CPT0379620002.WholeGenome.RP-2158.bam 35460612041 BAM aligned CPTAC3 240b2e4d-e444-4be2-b940-339fe2809293 52dc114754f4f87fb024ae99d19ac21c { 'aliquot_tag': 'ALQ_fc80fe93', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00440.WGS.N.hg38 C3N-00440 CCRCC WGS blood_normal CPT0379620002 e1f2cc11-b51a-4c43-9f43-711388ed0bf1_wgs_gdc_realn.bam 102881587761 BAM harmonized CPTAC3 c572aeac-e69f-43a0-aabc-144a4a239427 7c3a3fa0af0cfbcb65c5c1346d1599a7 { 'aliquot_tag': 'ALQ_fc80fe93', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00440.WGS.T C3N-00440 CCRCC WGS tumor CPT0379590007 CPT0379590007.WholeGenome.RP-2158.bam 21566140388 BAM aligned CPTAC3 154513e7-6da2-4442-a263-9788d0d50e32 c59d618ace2d519fc38a759a4072fb41 { 'aliquot_tag': 'ALQ_7dae49a3', 'gdc_sample_type': 'Primary Tumor' } @@ -20908,11 +22676,11 @@ C3N-00440.WXS.T C3N-00440 CCRCC WXS tumor CPT0379590007 CPT0379590007.WholeExome C3N-00440.WXS.T.hg38 C3N-00440 CCRCC WXS tumor CPT0379590007 2fd4e91c-35f9-4493-b4e7-03a44047d1a1_wxs_gdc_realn.bam 31012916639 BAM harmonized CPTAC3 2c44d632-8d2f-43d2-a41d-8ed9855a653e fa2b75fb2579e617a01414d8bd15cb2b { 'aliquot_tag': 'ALQ_7dae49a3', 'gdc_sample_type': 'Primary Tumor' } C3N-00466.MethArray.Green.Tpb C3N-00466 AML Methylation Array tumor_peripheral_blood CPT0023040001 202163550007_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 09a50e23-bcc0-44d9-9e0d-d2afd4d79579 6fc362d9e30485c59d31878d21a48bf1 { 'aliquot_tag': 'ALQ_e98dd47b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3N-00466.MethArray.Red.Tpb C3N-00466 AML Methylation Array tumor_peripheral_blood CPT0023040001 202163550007_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 490313e4-9601-464d-a661-0fa284fbf898 d6c7b1bd85e93c49a3e25ea5a1829bc8 { 'aliquot_tag': 'ALQ_e98dd47b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3N-00466.RNA-Seq.chimeric.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 0ac71e50-dccb-4c24-bf2f-ad801b2ad81f.rna_seq.chimeric.gdc_realn.bam 66687541 BAM chimeric harmonized CPTAC3 a33fddab-af59-4a90-ad8c-63aa446d2a4e c0e931c487444492d80cf04c5073059c { 'aliquot_tag': 'ALQ_5bad086b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3N-00466.RNA-Seq.genomic.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 0ac71e50-dccb-4c24-bf2f-ad801b2ad81f.rna_seq.genomic.gdc_realn.bam 6521730697 BAM genomic harmonized CPTAC3 f9a54190-62ac-4942-bc6f-52a768bdccd3 37d40a9799732c4d64bcaca369ea7e63 { 'aliquot_tag': 'ALQ_5bad086b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3N-00466.RNA-Seq.R1_L002.Tpb C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTCAA_S6_L002_R1_001.fastq.gz 2816749437 FASTQ R1_L002 unaligned CPTAC3 b69f393c-3bf9-4132-b5c1-238fc1859cb9 385e0df921737e91d3108a3ccf9ee83c { 'aliquot_tag': 'ALQ_5bad086b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3N-00466.RNA-Seq.R2_L002.Tpb C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTCAA_S6_L002_R2_001.fastq.gz 3034415884 FASTQ R2_L002 unaligned CPTAC3 5b6f2efe-8d73-4761-8059-bc09af777a4f 8f9d5e508edce6bcf93f7ab7897e23e2 { 'aliquot_tag': 'ALQ_5bad086b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } -C3N-00466.RNA-Seq.transcriptome.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 0ac71e50-dccb-4c24-bf2f-ad801b2ad81f.rna_seq.transcriptome.gdc_realn.bam 5671605925 BAM transcriptome harmonized CPTAC3 4ae76bb4-f8ba-4ee2-9b48-0101b7da9248 e377de494de3820e8d515580dea7679d { 'aliquot_tag': 'ALQ_5bad086b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3N-00466.RNA-Seq.chimeric.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 07d54ae5-5577-4fc1-937e-e57f9a40cd23.rna_seq.chimeric.gdc_realn.bam 66682033 BAM chimeric harmonized CPTAC3 0fc18851-6427-4b2c-9f47-345cf8ecc030 648fcf964b5d29efc72bdf799c99c972 { 'aliquot_tag': 'ALQ_5bad086b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3N-00466.RNA-Seq.genomic.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 07d54ae5-5577-4fc1-937e-e57f9a40cd23.rna_seq.genomic.gdc_realn.bam 6521149522 BAM genomic harmonized CPTAC3 306e901b-7acc-42c1-9b8b-3fb097269955 566a4c14157aabc1e1b3c95cb9a9b797 { 'aliquot_tag': 'ALQ_5bad086b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } +C3N-00466.RNA-Seq.R1_L002.Tpb C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTCAA_S6_L002_R1_001.fastq.gz 2816749437 FASTQ R1_L002 unaligned CPTAC3 b69f393c-3bf9-4132-b5c1-238fc1859cb9 385e0df921737e91d3108a3ccf9ee83c { 'aliquot_tag': 'ALQ_5bad086b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R1', 'lane': 'L002' } +C3N-00466.RNA-Seq.R2_L002.Tpb C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 170818_UNC32-K00270_0051_BHLCCHBBXX_AGTCAA_S6_L002_R2_001.fastq.gz 3034415884 FASTQ R2_L002 unaligned CPTAC3 5b6f2efe-8d73-4761-8059-bc09af777a4f 8f9d5e508edce6bcf93f7ab7897e23e2 { 'aliquot_tag': 'ALQ_5bad086b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood', 'read': 'R2', 'lane': 'L002' } +C3N-00466.RNA-Seq.transcriptome.Tpb.hg38 C3N-00466 AML RNA-Seq tumor_peripheral_blood CPT0023030001 07d54ae5-5577-4fc1-937e-e57f9a40cd23.rna_seq.transcriptome.gdc_realn.bam 6404588979 BAM transcriptome harmonized CPTAC3 86b52422-68d7-4796-841d-1d78fa1bfdac 1197ce93c9ab6427f3ad79e9a02f7b49 { 'aliquot_tag': 'ALQ_5bad086b', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } C3N-00466.WGS.Nbc C3N-00466 AML WGS buccal_normal CPT0023130002 CPT0023130002.WholeGenome.RP-1303.bam 74044344782 BAM aligned CPTAC3 0cfd2d71-7b69-458b-97a3-4ae8d52ced75 67ac0b37bd94be4cfb68b815d482bba2 { 'aliquot_tag': 'ALQ_9f88a74', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00466.WGS.Nbc.hg38 C3N-00466 AML WGS buccal_normal CPT0023130002 bd331a7b-50b2-4809-b754-ccd11174469b_gdc_realn.bam 117507605338 BAM harmonized CPTAC3 08d94116-dda1-410e-96e6-736a0455df56 3db9fe230d13551f79f5e70a2b8096ce { 'aliquot_tag': 'ALQ_9f88a74', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00466.WGS.Tpb C3N-00466 AML WGS tumor_peripheral_blood CPT0023020001 CPT0023020001.WholeGenome.RP-1303.bam 82871237582 BAM aligned CPTAC3 fb1f6098-5e12-4723-b880-3ebc5be8dbd6 d3cb74a1380431a6fdff1d6822170e97 { 'aliquot_tag': 'ALQ_66cd21db', 'gdc_sample_type': 'Primary Blood Derived Cancer - Peripheral Blood' } @@ -20932,11 +22700,11 @@ C3N-00491.miRNA-Seq.T.hg38 C3N-00491 CCRCC miRNA-Seq tumor CPT0012670009 130547b C3N-00491.RNA-Seq.chimeric.A.hg38 C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 22a1f4f2-bddc-484f-a6dd-dfc49de67f48.rna_seq.chimeric.gdc_realn.bam 65114385 BAM chimeric harmonized CPTAC3 f1a77706-eb69-43c4-acde-c31128d8021a af11b13c23d7e30c5fc06d2f0655c0cd { 'aliquot_tag': 'ALQ_8948ae92', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00491.RNA-Seq.chimeric.T.hg38 C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 d3f2edfb-2fa6-4604-acdd-7a033f950602.rna_seq.chimeric.gdc_realn.bam 62198299 BAM chimeric harmonized CPTAC3 249c2682-a629-4d37-aba7-ac8cb0f58315 aa5baeee5ccfe39ed45d64512509b6f6 { 'aliquot_tag': 'ALQ_5e57c9d3', 'gdc_sample_type': 'Primary Tumor' } C3N-00491.RNA-Seq.genomic.A.hg38 C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 22a1f4f2-bddc-484f-a6dd-dfc49de67f48.rna_seq.genomic.gdc_realn.bam 7911475016 BAM genomic harmonized CPTAC3 e63c2021-4fd9-45db-8952-51cc6c9972f7 fe2e49ae09038be7b4a5d6aeedb24fed { 'aliquot_tag': 'ALQ_8948ae92', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00491.RNA-Seq.genomic.T.hg38 C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 d3f2edfb-2fa6-4604-acdd-7a033f950602.rna_seq.genomic.gdc_realn.bam 6728746914 BAM genomic harmonized CPTAC3 e24b31f1-d5a4-4b46-998d-fc1526ceff3a ca7c13a941d0a26f082173e8f8163a49 { 'aliquot_tag': 'ALQ_5e57c9d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00491.RNA-Seq.R1_L005.A C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 171208_UNC32-K00270_0071_BHN7K5BBXX_AGTCAA_S49_L005_R1_001.fastq.gz 3666714942 FASTQ R1_L005 unaligned CPTAC3 b4814c36-6e4b-45f5-91fa-79b5ec41ae42 7ea6ce693a7e26a1359392a5e16eb97b { 'aliquot_tag': 'ALQ_8948ae92', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00491.RNA-Seq.R1_L006.T C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 170823_UNC31-K00269_0075_AHLCW5BBXX_ATGTCA_S21_L006_R1_001.fastq.gz 3192212258 FASTQ R1_L006 unaligned CPTAC3 2f6994ee-d320-4923-af43-167c5670d988 eb42612b85609c0e29b457401d6695d1 { 'aliquot_tag': 'ALQ_5e57c9d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00491.RNA-Seq.R2_L005.A C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 171208_UNC32-K00270_0071_BHN7K5BBXX_AGTCAA_S49_L005_R2_001.fastq.gz 3846780589 FASTQ R2_L005 unaligned CPTAC3 07455c3f-d477-4c70-9b4b-00a44c06f8a3 439b1bcdc9490fd8f5931962ef50a2a3 { 'aliquot_tag': 'ALQ_8948ae92', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00491.RNA-Seq.R2_L006.T C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 170823_UNC31-K00269_0075_AHLCW5BBXX_ATGTCA_S21_L006_R2_001.fastq.gz 3433672047 FASTQ R2_L006 unaligned CPTAC3 2b86d9b0-c43d-4089-b72d-bc374d152fd0 2de29d94e0b734ac206d4d1db857baf2 { 'aliquot_tag': 'ALQ_5e57c9d3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00491.RNA-Seq.genomic.T.hg38 C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 d3f2edfb-2fa6-4604-acdd-7a033f950602.rna_seq.genomic.gdc_realn.bam 6728746914 BAM genomic harmonized CPTAC3 ad314b59-8218-49e6-a43b-cd114cee466f ca7c13a941d0a26f082173e8f8163a49 { 'aliquot_tag': 'ALQ_5e57c9d3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00491.RNA-Seq.R1_L005.A C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 171208_UNC32-K00270_0071_BHN7K5BBXX_AGTCAA_S49_L005_R1_001.fastq.gz 3666714942 FASTQ R1_L005 unaligned CPTAC3 b4814c36-6e4b-45f5-91fa-79b5ec41ae42 7ea6ce693a7e26a1359392a5e16eb97b { 'aliquot_tag': 'ALQ_8948ae92', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00491.RNA-Seq.R1_L006.T C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 170823_UNC31-K00269_0075_AHLCW5BBXX_ATGTCA_S21_L006_R1_001.fastq.gz 3192212258 FASTQ R1_L006 unaligned CPTAC3 2f6994ee-d320-4923-af43-167c5670d988 eb42612b85609c0e29b457401d6695d1 { 'aliquot_tag': 'ALQ_5e57c9d3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00491.RNA-Seq.R2_L005.A C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 171208_UNC32-K00270_0071_BHN7K5BBXX_AGTCAA_S49_L005_R2_001.fastq.gz 3846780589 FASTQ R2_L005 unaligned CPTAC3 07455c3f-d477-4c70-9b4b-00a44c06f8a3 439b1bcdc9490fd8f5931962ef50a2a3 { 'aliquot_tag': 'ALQ_8948ae92', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-00491.RNA-Seq.R2_L006.T C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 170823_UNC31-K00269_0075_AHLCW5BBXX_ATGTCA_S21_L006_R2_001.fastq.gz 3433672047 FASTQ R2_L006 unaligned CPTAC3 2b86d9b0-c43d-4089-b72d-bc374d152fd0 2de29d94e0b734ac206d4d1db857baf2 { 'aliquot_tag': 'ALQ_5e57c9d3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-00491.RNA-Seq.transcriptome.A.hg38 C3N-00491 CCRCC RNA-Seq tissue_normal CPT0012640006 22a1f4f2-bddc-484f-a6dd-dfc49de67f48.rna_seq.transcriptome.gdc_realn.bam 8406356687 BAM transcriptome harmonized CPTAC3 df947cdd-c5b6-4db0-b7be-983b2a6e6724 80b43a718f198362ef0524bad7debe2c { 'aliquot_tag': 'ALQ_8948ae92', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00491.RNA-Seq.transcriptome.T.hg38 C3N-00491 CCRCC RNA-Seq tumor CPT0012670009 d3f2edfb-2fa6-4604-acdd-7a033f950602.rna_seq.transcriptome.gdc_realn.bam 8698786303 BAM transcriptome harmonized CPTAC3 be3a2b8a-7fd6-43d3-b6fa-96c951362c21 7e9304f37e5861dc9ce0cbb50a3ebfba { 'aliquot_tag': 'ALQ_5e57c9d3', 'gdc_sample_type': 'Primary Tumor' } C3N-00491.WGS.A C3N-00491 CCRCC WGS tissue_normal CPT0012640009 CPT0012640009.WholeGenome.RP-1303.bam 55624299568 BAM aligned CPTAC3 a21dffb0-0bde-4340-bd51-8d0359631aae f2b28e40f164f4a9911bbf66acf2dfc0 { 'aliquot_tag': 'ALQ_19f7b303', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20958,9 +22726,9 @@ C3N-00492.MethArray.Red.T C3N-00492 CCRCC Methylation Array tumor CPT0079180009 C3N-00492.miRNA-Seq.T C3N-00492 CCRCC miRNA-Seq tumor CPT0079180006 181119_UNC31-K00269_0165_AH27WCBBXY_ATCACG_S25_L005_R1_001.unaln.bam 173335269 BAM unaligned CPTAC3 9a2d4bdb-1af8-4c2f-86aa-863eaa44354b f2f1a8d2d4e524c0b5c2d2001b56a752 { 'aliquot_tag': 'ALQ_95d52e56', 'gdc_sample_type': 'Primary Tumor' } C3N-00492.miRNA-Seq.T.hg38 C3N-00492 CCRCC miRNA-Seq tumor CPT0079180006 3d777583-ff48-4f8a-9192-29a0408fd077_mirnaseq_gdc_realn.bam 193627985 BAM harmonized CPTAC3 5591bbbb-474a-4f97-bbb8-f9546fe8ae9a d44872254378c91f5c34993739ea11d7 { 'aliquot_tag': 'ALQ_95d52e56', 'gdc_sample_type': 'Primary Tumor' } C3N-00492.RNA-Seq.chimeric.T.hg38 C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 1d7cb70a-6888-4355-a5a7-9aa27e2def6a.rna_seq.chimeric.gdc_realn.bam 175913498 BAM chimeric harmonized CPTAC3 bcfbec0e-29ea-48f6-b5f3-eb147ec7a0f4 879af74b0034f0c580125c5a2bd61935 { 'aliquot_tag': 'ALQ_95d52e56', 'gdc_sample_type': 'Primary Tumor' } -C3N-00492.RNA-Seq.genomic.T.hg38 C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 1d7cb70a-6888-4355-a5a7-9aa27e2def6a.rna_seq.genomic.gdc_realn.bam 8534592348 BAM genomic harmonized CPTAC3 b802ab59-c097-4773-bea7-36be46549082 ae736a51de9df3f21a7c22c323c90ffa { 'aliquot_tag': 'ALQ_95d52e56', 'gdc_sample_type': 'Primary Tumor' } -C3N-00492.RNA-Seq.R1_L003.T C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4287253516 FASTQ R1_L003 unaligned CPTAC3 24b6cd17-b856-4ca8-8ff1-ee1fa9c70e2b 7f80f213489a3b0db53f41f5181bd20c { 'aliquot_tag': 'ALQ_95d52e56', 'gdc_sample_type': 'Primary Tumor' } -C3N-00492.RNA-Seq.R2_L003.T C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4547476920 FASTQ R2_L003 unaligned CPTAC3 5ac1e5d2-0e4e-4e8e-9d94-fe318ed2a013 7efd7a53c2a94306d56cbfa7a1b2a73e { 'aliquot_tag': 'ALQ_95d52e56', 'gdc_sample_type': 'Primary Tumor' } +C3N-00492.RNA-Seq.genomic.T.hg38 C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 1d7cb70a-6888-4355-a5a7-9aa27e2def6a.rna_seq.genomic.gdc_realn.bam 8534592348 BAM genomic harmonized CPTAC3 5af8c7da-6220-4abe-b76d-a7e3daf4d764 ae736a51de9df3f21a7c22c323c90ffa { 'aliquot_tag': 'ALQ_95d52e56', 'gdc_sample_type': 'Primary Tumor' } +C3N-00492.RNA-Seq.R1_L003.T C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4287253516 FASTQ R1_L003 unaligned CPTAC3 24b6cd17-b856-4ca8-8ff1-ee1fa9c70e2b 7f80f213489a3b0db53f41f5181bd20c { 'aliquot_tag': 'ALQ_95d52e56', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00492.RNA-Seq.R2_L003.T C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 170905_UNC31-K00269_0079_AHLCF7BBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4547476920 FASTQ R2_L003 unaligned CPTAC3 5ac1e5d2-0e4e-4e8e-9d94-fe318ed2a013 7efd7a53c2a94306d56cbfa7a1b2a73e { 'aliquot_tag': 'ALQ_95d52e56', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-00492.RNA-Seq.transcriptome.T.hg38 C3N-00492 CCRCC RNA-Seq tumor CPT0079180006 1d7cb70a-6888-4355-a5a7-9aa27e2def6a.rna_seq.transcriptome.gdc_realn.bam 8177176440 BAM transcriptome harmonized CPTAC3 2ce2a57a-ddc7-4863-800c-f949fbb0feac 969341c8230240fc423f5c8b3bf92380 { 'aliquot_tag': 'ALQ_95d52e56', 'gdc_sample_type': 'Primary Tumor' } C3N-00492.WGS.A C3N-00492 CCRCC WGS tissue_normal CPT0012770009 CPT0012770009.WholeGenome.RP-1303.bam 59815465023 BAM aligned CPTAC3 a6a6f262-9a7f-4468-8b39-5f87b8579fad de1a256b4a4d99b4dcfcedf24b9e4e26 { 'aliquot_tag': 'ALQ_950b1a76', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00492.WGS.A.hg38 C3N-00492 CCRCC WGS tissue_normal CPT0012770009 e2708c50-3927-412a-8769-c4ffd79a61bd_wgs_gdc_realn.bam 88466707880 BAM harmonized CPTAC3 29ea796b-0f9f-4dca-bf64-ab8358880f5e 74a2246c24794fa7a126e7a51a468db6 { 'aliquot_tag': 'ALQ_950b1a76', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -20978,8 +22746,8 @@ C3N-00494.DUP_20418ea6.miRNA-Seq.T C3N-00494 CCRCC miRNA-Seq tumor CPT0012910009 C3N-00494.DUP_20418ea6.miRNA-Seq.T.hg38 C3N-00494 CCRCC miRNA-Seq tumor CPT0012910009 40e674e5-a06b-46f9-b604-e0145b171886_mirnaseq_gdc_realn.bam 194708761 BAM harmonized CPTAC3 3a1c57f7-1139-461a-8215-79a7f9c57597 7d391115e28087997040132ab06ad08e { 'aliquot_tag': 'DUP_20418ea6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00494.DUP_20418ea6.RNA-Seq.chimeric.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 c915377d-3946-4537-8158-74534f061d27.rna_seq.chimeric.gdc_realn.bam 48040467 BAM chimeric harmonized CPTAC3 933c58a8-0119-4ba4-bdd6-f6970257bd77 11fc2b40a4e1f375fa0531e9cefd2702 { 'aliquot_tag': 'DUP_20418ea6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00494.DUP_20418ea6.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 c915377d-3946-4537-8158-74534f061d27.rna_seq.genomic.gdc_realn.bam 6612786504 BAM genomic harmonized CPTAC3 11999036-a4c5-4e4c-b627-48a7c70ef660 82c2dab49c18a22128a936dc7206f5cd { 'aliquot_tag': 'DUP_20418ea6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00494.DUP_20418ea6.RNA-Seq.R1_L004.T C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 200519_UNC31-K00269_0280_BHHKGNBBXY_CCTTCACC-GACGCTCC_S14_L004_R1_001.fastq.gz 3125681078 FASTQ R1_L004 unaligned CPTAC3 d7c57fa6-a2da-435f-9c9e-090ea4ece298 82005b205dbf6b34e4cfa90389663b4a { 'aliquot_tag': 'DUP_20418ea6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00494.DUP_20418ea6.RNA-Seq.R2_L004.T C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 200519_UNC31-K00269_0280_BHHKGNBBXY_CCTTCACC-GACGCTCC_S14_L004_R2_001.fastq.gz 3613516467 FASTQ R2_L004 unaligned CPTAC3 a51962b2-2228-4455-bcf6-57d6d4479067 73463c1eccebdf03f84af4280ec55873 { 'aliquot_tag': 'DUP_20418ea6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00494.DUP_20418ea6.RNA-Seq.R1_L004.T C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 200519_UNC31-K00269_0280_BHHKGNBBXY_CCTTCACC-GACGCTCC_S14_L004_R1_001.fastq.gz 3125681078 FASTQ R1_L004 unaligned CPTAC3 d7c57fa6-a2da-435f-9c9e-090ea4ece298 82005b205dbf6b34e4cfa90389663b4a { 'aliquot_tag': 'DUP_20418ea6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3N-00494.DUP_20418ea6.RNA-Seq.R2_L004.T C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 200519_UNC31-K00269_0280_BHHKGNBBXY_CCTTCACC-GACGCTCC_S14_L004_R2_001.fastq.gz 3613516467 FASTQ R2_L004 unaligned CPTAC3 a51962b2-2228-4455-bcf6-57d6d4479067 73463c1eccebdf03f84af4280ec55873 { 'aliquot_tag': 'DUP_20418ea6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3N-00494.DUP_20418ea6.RNA-Seq.transcriptome.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012910009 c915377d-3946-4537-8158-74534f061d27.rna_seq.transcriptome.gdc_realn.bam 7169763181 BAM transcriptome harmonized CPTAC3 5f379e16-00e3-47f8-a0f2-745816c76796 9e0db79621aebc2c17da131844a5d916 { 'aliquot_tag': 'DUP_20418ea6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00494.DUP_76b222e3.MethArray.Green.T C3N-00494 CCRCC Methylation Array tumor CPT0012880006 204367490048_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1b16f23e-06d2-4606-b7d8-2ddef7a80d55 92d368262662657aecc174226e8f1e9f { 'aliquot_tag': 'DUP_76b222e3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00494.DUP_76b222e3.MethArray.Red.T C3N-00494 CCRCC Methylation Array tumor CPT0012880006 204367490048_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 3ebf84e4-729c-44de-88bb-94ec9d1202d3 fe47c31c5f2e05f77cb053ce6261abe6 { 'aliquot_tag': 'DUP_76b222e3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -20996,9 +22764,9 @@ C3N-00494.DUP_b0fe9337.WXS.T.hg38 C3N-00494 CCRCC WXS tumor CPT0012910006 4b79b8 C3N-00494.DUP_e60d3f72.miRNA-Seq.T C3N-00494 CCRCC miRNA-Seq tumor CPT0012880009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTGAAA_S32_L002_R1_001.unaln.bam 250835777 BAM unaligned CPTAC3 c0ccf61f-58af-4e0a-b1bf-cadfd690c248 6fe3e608bbe5f118b6e0bd8cd31e2bf6 { 'aliquot_tag': 'DUP_e60d3f72', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00494.DUP_e60d3f72.miRNA-Seq.T.hg38 C3N-00494 CCRCC miRNA-Seq tumor CPT0012880009 bac2e0e6-2f4e-4710-8714-0563133ca726_mirnaseq_gdc_realn.bam 278452951 BAM harmonized CPTAC3 63674e1f-033b-40e7-8b36-8cc02e29b070 ec62422d2402bb2b6711bf8ca1444329 { 'aliquot_tag': 'DUP_e60d3f72', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00494.DUP_e60d3f72.RNA-Seq.chimeric.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 a15f5b73-d0bc-40f0-8018-22bec5614bc4.rna_seq.chimeric.gdc_realn.bam 62102027 BAM chimeric harmonized CPTAC3 0ec8c364-ae36-45ca-ae79-87b83c1d158e b6906302fe8254decf2229c0e44f458e { 'aliquot_tag': 'DUP_e60d3f72', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00494.DUP_e60d3f72.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 a15f5b73-d0bc-40f0-8018-22bec5614bc4.rna_seq.genomic.gdc_realn.bam 8948795833 BAM genomic harmonized CPTAC3 0d53f72a-ff7e-428e-9c33-f7969edcf15b ca9a97932f31b7a77312124d0e1ae0ed { 'aliquot_tag': 'DUP_e60d3f72', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00494.DUP_e60d3f72.RNA-Seq.R1_L004.T C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 200519_UNC31-K00269_0280_BHHKGNBBXY_TTCCTGTT-AGTATCTT_S16_L004_R1_001.fastq.gz 4468034938 FASTQ R1_L004 unaligned CPTAC3 1bdb8c8b-dac9-44d8-9e24-c03902cb6052 10c68565be91bc657177e5223fa02f5c { 'aliquot_tag': 'DUP_e60d3f72', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00494.DUP_e60d3f72.RNA-Seq.R2_L004.T C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 200519_UNC31-K00269_0280_BHHKGNBBXY_TTCCTGTT-AGTATCTT_S16_L004_R2_001.fastq.gz 5042833136 FASTQ R2_L004 unaligned CPTAC3 5ac4146a-1572-4b59-8388-c503f6beb946 79597706c38f3b7b15bd36ff1dcf9ad6 { 'aliquot_tag': 'DUP_e60d3f72', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00494.DUP_e60d3f72.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 a15f5b73-d0bc-40f0-8018-22bec5614bc4.rna_seq.genomic.gdc_realn.bam 8948795833 BAM genomic harmonized CPTAC3 1bd54066-e5f6-4e44-9abe-9eed89cbbe5d ca9a97932f31b7a77312124d0e1ae0ed { 'aliquot_tag': 'DUP_e60d3f72', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00494.DUP_e60d3f72.RNA-Seq.R1_L004.T C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 200519_UNC31-K00269_0280_BHHKGNBBXY_TTCCTGTT-AGTATCTT_S16_L004_R1_001.fastq.gz 4468034938 FASTQ R1_L004 unaligned CPTAC3 1bdb8c8b-dac9-44d8-9e24-c03902cb6052 10c68565be91bc657177e5223fa02f5c { 'aliquot_tag': 'DUP_e60d3f72', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3N-00494.DUP_e60d3f72.RNA-Seq.R2_L004.T C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 200519_UNC31-K00269_0280_BHHKGNBBXY_TTCCTGTT-AGTATCTT_S16_L004_R2_001.fastq.gz 5042833136 FASTQ R2_L004 unaligned CPTAC3 5ac4146a-1572-4b59-8388-c503f6beb946 79597706c38f3b7b15bd36ff1dcf9ad6 { 'aliquot_tag': 'DUP_e60d3f72', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3N-00494.DUP_e60d3f72.RNA-Seq.transcriptome.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012880009 a15f5b73-d0bc-40f0-8018-22bec5614bc4.rna_seq.transcriptome.gdc_realn.bam 13221551231 BAM transcriptome harmonized CPTAC3 b07eea9a-79e4-4e24-9dfc-e797ec648dee 7586028952db259a8cb0008a0e9904a7 { 'aliquot_tag': 'DUP_e60d3f72', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00494.MethArray.Green.A C3N-00494 CCRCC Methylation Array tissue_normal CPT0012920009 204930630086_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 eef6b415-6bcc-4ddc-bd07-b5c026eb5793 db885830f60c6bcf880a19c99a808b35 { 'aliquot_tag': 'ALQ_67e1f476', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00494.MethArray.Green.T C3N-00494 CCRCC Methylation Array tumor CPT0012900010 202178770045_R02C01_Grn.idat 13676241 IDAT Green NA CPTAC3 308bc5ea-6415-4670-a10c-3a68ddac1ab9 3c187bfb472beab973578217ffde1cf2 { 'aliquot_tag': 'ALQ_7de62ef3', 'gdc_sample_type': 'Primary Tumor' } @@ -21010,12 +22778,12 @@ C3N-00494.miRNA-Seq.T C3N-00494 CCRCC miRNA-Seq tumor CPT0012900007 181012_UNC32 C3N-00494.miRNA-Seq.T.hg38 C3N-00494 CCRCC miRNA-Seq tumor CPT0012900007 313bd6bb-d242-4f5e-83d2-fc33e941df98_mirnaseq_gdc_realn.bam 267919198 BAM harmonized CPTAC3 dcd1547c-aa1d-4b2a-8dbf-92d01620b514 31b741f4481b1d1eb8fe1d3583021408 { 'aliquot_tag': 'ALQ_fa998a11', 'gdc_sample_type': 'Primary Tumor' } C3N-00494.RNA-Seq.chimeric.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 f9f9d245-34e5-4e88-9427-984c9a0c086f.rna_seq.chimeric.gdc_realn.bam 140096324 BAM chimeric harmonized CPTAC3 738ad0af-574b-4f88-ad25-0c5dd36ca9fe a77c2ea71a303e7fb83d6afd03843111 { 'aliquot_tag': 'ALQ_9e2f2c29', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00494.RNA-Seq.chimeric.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 79f4330c-cfa1-42f5-8f89-3ca79afbb423.rna_seq.chimeric.gdc_realn.bam 66625420 BAM chimeric harmonized CPTAC3 a1079751-90b1-4f60-9409-8cc9553b706e 0f6b033aa39cef610e83a5b7cca0cf22 { 'aliquot_tag': 'ALQ_fa998a11', 'gdc_sample_type': 'Primary Tumor' } -C3N-00494.RNA-Seq.genomic.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 f9f9d245-34e5-4e88-9427-984c9a0c086f.rna_seq.genomic.gdc_realn.bam 8260514294 BAM genomic harmonized CPTAC3 f4fa349f-4ee3-458d-825c-16941cf816d8 e8d7e81ae1f81665a34afd020eb34057 { 'aliquot_tag': 'ALQ_9e2f2c29', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00494.RNA-Seq.genomic.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 f9f9d245-34e5-4e88-9427-984c9a0c086f.rna_seq.genomic.gdc_realn.bam 8260514294 BAM genomic harmonized CPTAC3 40accf62-5db7-41ca-a5cd-3c5e84547a01 e8d7e81ae1f81665a34afd020eb34057 { 'aliquot_tag': 'ALQ_9e2f2c29', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00494.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 79f4330c-cfa1-42f5-8f89-3ca79afbb423.rna_seq.genomic.gdc_realn.bam 7017890475 BAM genomic harmonized CPTAC3 e5e39516-4596-41ab-93a6-5a4584ff5e7b c17b2a0796bdba6362e680f9904a3964 { 'aliquot_tag': 'ALQ_fa998a11', 'gdc_sample_type': 'Primary Tumor' } -C3N-00494.RNA-Seq.R1_L005.T C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGAAA_S18_L005_R1_001.fastq.gz 3444661736 FASTQ R1_L005 unaligned CPTAC3 6f33effb-eaec-4176-a032-7e7c017b66b6 d9f27f942a17e2ccd422af1e8735454f { 'aliquot_tag': 'ALQ_fa998a11', 'gdc_sample_type': 'Primary Tumor' } -C3N-00494.RNA-Seq.R1_L008.A C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 180313_UNC32-K00270_0085_BHT2MGBBXX_ATGTCA_S43_L008_R1_001.fastq.gz 3429082012 FASTQ R1_L008 unaligned CPTAC3 4206da2c-7976-4fe3-b4c0-84fd2c9e3b69 16c2f5859c86ab8bd0353218cd8f7d18 { 'aliquot_tag': 'ALQ_9e2f2c29', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00494.RNA-Seq.R2_L005.T C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGAAA_S18_L005_R2_001.fastq.gz 3573204620 FASTQ R2_L005 unaligned CPTAC3 9571a8f2-e58e-437d-930c-2c5c9073576e 65e538b435b95e246b37ecae0d5dc8b3 { 'aliquot_tag': 'ALQ_fa998a11', 'gdc_sample_type': 'Primary Tumor' } -C3N-00494.RNA-Seq.R2_L008.A C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 180313_UNC32-K00270_0085_BHT2MGBBXX_ATGTCA_S43_L008_R2_001.fastq.gz 3743408251 FASTQ R2_L008 unaligned CPTAC3 eee3dfdf-79e9-48ce-aaca-f047ef10c13b f57cf44785d34c73392011bece291365 { 'aliquot_tag': 'ALQ_9e2f2c29', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00494.RNA-Seq.R1_L005.T C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGAAA_S18_L005_R1_001.fastq.gz 3444661736 FASTQ R1_L005 unaligned CPTAC3 6f33effb-eaec-4176-a032-7e7c017b66b6 d9f27f942a17e2ccd422af1e8735454f { 'aliquot_tag': 'ALQ_fa998a11', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00494.RNA-Seq.R1_L008.A C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 180313_UNC32-K00270_0085_BHT2MGBBXX_ATGTCA_S43_L008_R1_001.fastq.gz 3429082012 FASTQ R1_L008 unaligned CPTAC3 4206da2c-7976-4fe3-b4c0-84fd2c9e3b69 16c2f5859c86ab8bd0353218cd8f7d18 { 'aliquot_tag': 'ALQ_9e2f2c29', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00494.RNA-Seq.R2_L005.T C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 170823_UNC31-K00269_0075_AHLCW5BBXX_GTGAAA_S18_L005_R2_001.fastq.gz 3573204620 FASTQ R2_L005 unaligned CPTAC3 9571a8f2-e58e-437d-930c-2c5c9073576e 65e538b435b95e246b37ecae0d5dc8b3 { 'aliquot_tag': 'ALQ_fa998a11', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00494.RNA-Seq.R2_L008.A C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 180313_UNC32-K00270_0085_BHT2MGBBXX_ATGTCA_S43_L008_R2_001.fastq.gz 3743408251 FASTQ R2_L008 unaligned CPTAC3 eee3dfdf-79e9-48ce-aaca-f047ef10c13b f57cf44785d34c73392011bece291365 { 'aliquot_tag': 'ALQ_9e2f2c29', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00494.RNA-Seq.transcriptome.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal CPT0012920013 f9f9d245-34e5-4e88-9427-984c9a0c086f.rna_seq.transcriptome.gdc_realn.bam 7016355602 BAM transcriptome harmonized CPTAC3 5605098e-cde3-44bd-a3c4-a280fd724eb1 68fa068a620106293d3002cd58e8f1bc { 'aliquot_tag': 'ALQ_9e2f2c29', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00494.RNA-Seq.transcriptome.T.hg38 C3N-00494 CCRCC RNA-Seq tumor CPT0012900007 79f4330c-cfa1-42f5-8f89-3ca79afbb423.rna_seq.transcriptome.gdc_realn.bam 9001409742 BAM transcriptome harmonized CPTAC3 a2e6ae1d-a1b9-4396-91bf-05495d2ac94e d3b9f1a209ae329daa5a5cc6ecbebb30 { 'aliquot_tag': 'ALQ_fa998a11', 'gdc_sample_type': 'Primary Tumor' } C3N-00494.WGS.A C3N-00494 CCRCC WGS tissue_normal CPT0012920009 CPT0012920009.WholeGenome.RP-1303.bam 60573651552 BAM aligned CPTAC3 ee03ffb6-dfac-4d98-b863-9e1f256bcb74 b2b919fd1d865749df52d0047e6e95e9 { 'aliquot_tag': 'ALQ_67e1f476', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21040,12 +22808,12 @@ C3N-00495.miRNA-Seq.T C3N-00495 CCRCC miRNA-Seq tumor CPT0078510006 181012_UNC32 C3N-00495.miRNA-Seq.T.hg38 C3N-00495 CCRCC miRNA-Seq tumor CPT0078510006 15a19df8-068b-4b46-b072-3bfa7b1ce309_mirnaseq_gdc_realn.bam 256508919 BAM harmonized CPTAC3 8c423516-5270-4bd6-8b28-066c45a6ee3d 60fb4e0431eacfb4159e6ca70ccf0b6e { 'aliquot_tag': 'ALQ_a5230585', 'gdc_sample_type': 'Primary Tumor' } C3N-00495.RNA-Seq.chimeric.A.hg38 C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 b470af40-66e0-487c-b284-13142e60a76a.rna_seq.chimeric.gdc_realn.bam 70350335 BAM chimeric harmonized CPTAC3 c1709245-4e64-44bd-89c5-1f1af172035f 224b876f24f2a8602a284b9c2594ac07 { 'aliquot_tag': 'ALQ_dfe356e5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00495.RNA-Seq.chimeric.T.hg38 C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 8338e830-8795-4e7c-aa8e-e1e1dfc59fa0.rna_seq.chimeric.gdc_realn.bam 65034908 BAM chimeric harmonized CPTAC3 32d12f6c-ff9f-4f6c-a3ae-a5c85e310b6e 7260c0180ed9a58a43b5d77bc835c0a2 { 'aliquot_tag': 'ALQ_a5230585', 'gdc_sample_type': 'Primary Tumor' } -C3N-00495.RNA-Seq.genomic.A.hg38 C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 b470af40-66e0-487c-b284-13142e60a76a.rna_seq.genomic.gdc_realn.bam 8380069022 BAM genomic harmonized CPTAC3 9edf78b5-7936-4ce4-afaf-89c7b9e993e0 91c0bf0ed347101cb6073e6c7481c031 { 'aliquot_tag': 'ALQ_dfe356e5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00495.RNA-Seq.genomic.A.hg38 C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 b470af40-66e0-487c-b284-13142e60a76a.rna_seq.genomic.gdc_realn.bam 8380069022 BAM genomic harmonized CPTAC3 a3030261-de4a-4cf2-8240-89513b414ade 91c0bf0ed347101cb6073e6c7481c031 { 'aliquot_tag': 'ALQ_dfe356e5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00495.RNA-Seq.genomic.T.hg38 C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 8338e830-8795-4e7c-aa8e-e1e1dfc59fa0.rna_seq.genomic.gdc_realn.bam 8431682893 BAM genomic harmonized CPTAC3 5f3cb28e-c63c-4682-a0b2-b61ac2227031 2c42f7b2909f895cda02ee34eecc78d9 { 'aliquot_tag': 'ALQ_a5230585', 'gdc_sample_type': 'Primary Tumor' } -C3N-00495.RNA-Seq.R1_L002.A C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L002_R1_001.fastq.gz 3991839423 FASTQ R1_L002 unaligned CPTAC3 4738be16-7eb0-4fb4-99d8-238e271c6ba1 7b08a64627ed81c2b4c4df12a1ff29a5 { 'aliquot_tag': 'ALQ_dfe356e5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00495.RNA-Seq.R1_L006.T C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L006_R1_001.fastq.gz 4319239976 FASTQ R1_L006 unaligned CPTAC3 30d1940d-f271-4ba1-b30a-8eea0c8cfc0a e631b7b5d6972192cd881c8d0d4e56a1 { 'aliquot_tag': 'ALQ_a5230585', 'gdc_sample_type': 'Primary Tumor' } -C3N-00495.RNA-Seq.R2_L002.A C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L002_R2_001.fastq.gz 4419153111 FASTQ R2_L002 unaligned CPTAC3 5c35e953-583d-4c81-bc60-2f95f4776e16 d9238e58ec0289cc203aa249c0f8fc1b { 'aliquot_tag': 'ALQ_dfe356e5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00495.RNA-Seq.R2_L006.T C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L006_R2_001.fastq.gz 4611002202 FASTQ R2_L006 unaligned CPTAC3 d8430241-6e92-4270-992c-69438cb7b217 06424933fd3f8f92755eee9643f6f647 { 'aliquot_tag': 'ALQ_a5230585', 'gdc_sample_type': 'Primary Tumor' } +C3N-00495.RNA-Seq.R1_L002.A C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L002_R1_001.fastq.gz 3991839423 FASTQ R1_L002 unaligned CPTAC3 4738be16-7eb0-4fb4-99d8-238e271c6ba1 7b08a64627ed81c2b4c4df12a1ff29a5 { 'aliquot_tag': 'ALQ_dfe356e5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-00495.RNA-Seq.R1_L006.T C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L006_R1_001.fastq.gz 4319239976 FASTQ R1_L006 unaligned CPTAC3 30d1940d-f271-4ba1-b30a-8eea0c8cfc0a e631b7b5d6972192cd881c8d0d4e56a1 { 'aliquot_tag': 'ALQ_a5230585', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00495.RNA-Seq.R2_L002.A C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L002_R2_001.fastq.gz 4419153111 FASTQ R2_L002 unaligned CPTAC3 5c35e953-583d-4c81-bc60-2f95f4776e16 d9238e58ec0289cc203aa249c0f8fc1b { 'aliquot_tag': 'ALQ_dfe356e5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-00495.RNA-Seq.R2_L006.T C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTTCC_S15_L006_R2_001.fastq.gz 4611002202 FASTQ R2_L006 unaligned CPTAC3 d8430241-6e92-4270-992c-69438cb7b217 06424933fd3f8f92755eee9643f6f647 { 'aliquot_tag': 'ALQ_a5230585', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-00495.RNA-Seq.transcriptome.A.hg38 C3N-00495 CCRCC RNA-Seq tissue_normal CPT0078530006 b470af40-66e0-487c-b284-13142e60a76a.rna_seq.transcriptome.gdc_realn.bam 10262521940 BAM transcriptome harmonized CPTAC3 f6fe5b7b-054b-4f65-ad6b-abe2c06fea28 ff0c75d03b71886861d90583756f042b { 'aliquot_tag': 'ALQ_dfe356e5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00495.RNA-Seq.transcriptome.T.hg38 C3N-00495 CCRCC RNA-Seq tumor CPT0078510006 8338e830-8795-4e7c-aa8e-e1e1dfc59fa0.rna_seq.transcriptome.gdc_realn.bam 13044034268 BAM transcriptome harmonized CPTAC3 c46a0749-9727-404e-9af9-9194779717ba edb1495b6c09f93668652e3fd331da5b { 'aliquot_tag': 'ALQ_a5230585', 'gdc_sample_type': 'Primary Tumor' } C3N-00495.WGS.A C3N-00495 CCRCC WGS tissue_normal CPT0078530009 CPT0078530009.WholeGenome.RP-1303.bam 62418425790 BAM aligned CPTAC3 6674e95d-d26e-4716-b6a2-eae690d6d775 c97a085f493ba2bfe1685fb4acd6ea9d { 'aliquot_tag': 'ALQ_4f5c4b74', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21066,11 +22834,11 @@ C3N-00496.MethArray.Red.A C3N-00496 CCRCC Methylation Array tissue_normal CPT037 C3N-00496.MethArray.Red.T C3N-00496 CCRCC Methylation Array tumor CPT0379630015 205549600082_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 6ca56177-963a-4f81-843c-d44054e4d2ee 1313177e25f3e1693036db5f6c1e86a1 { 'aliquot_tag': 'ALQ_469f73c1', 'gdc_sample_type': 'Primary Tumor' } C3N-00496.miRNA-Seq.T C3N-00496 CCRCC miRNA-Seq tumor CPT0379630012 210111_UNC32-K00270_0270_AHJ5LKBBXY_ATCACG_S41_L003_R1_001.unaln.bam 227818716 BAM unaligned CPTAC3 ff99013c-d2a4-4514-bf33-81ab2953b29c 8174121eab279698af1f78515d2cbdbf { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor' } C3N-00496.miRNA-Seq.T.hg38 C3N-00496 CCRCC miRNA-Seq tumor CPT0379630012 3c053384-4119-47ed-bba1-e163bfd35bfa_mirnaseq_gdc_realn.bam 243070675 BAM harmonized CPTAC3 22188db3-37e4-4fba-ac06-4305f6ea59e8 fbaa8df680b7cd4c5b400b8289f8206c { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor' } -C3N-00496.RNA-Seq.chimeric.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 e66c9b7c-bc2b-45c2-b964-b662b4865291.rna_seq.chimeric.gdc_realn.bam 70474903 BAM chimeric harmonized CPTAC3 490bb2b1-df5f-4fa6-834d-85de054e5271 cd6a1cccd61827e13b7e0560b54f7bdd { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor' } -C3N-00496.RNA-Seq.genomic.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 e66c9b7c-bc2b-45c2-b964-b662b4865291.rna_seq.genomic.gdc_realn.bam 8674549232 BAM genomic harmonized CPTAC3 10ed67dc-7771-4050-a1c9-d7f585612dcc 23b2928f2862f614c4d919f98d01c4de { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor' } -C3N-00496.RNA-Seq.R1_L008.T C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 4028324968 FASTQ R1_L008 unaligned CPTAC3 13b9c739-e5c8-4a14-9a77-8b2375da111f f2715831e82b75188181e53302f73a33 { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor' } -C3N-00496.RNA-Seq.R2_L008.T C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4734387379 FASTQ R2_L008 unaligned CPTAC3 dbe21c0a-6051-4be1-ae32-1637b875cf8a a5a11ef51d1ea2ad24fc1acc7391f902 { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor' } -C3N-00496.RNA-Seq.transcriptome.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 e66c9b7c-bc2b-45c2-b964-b662b4865291.rna_seq.transcriptome.gdc_realn.bam 9555041805 BAM transcriptome harmonized CPTAC3 f9c6507f-0c5a-4657-8f2d-cd4a04828fd7 98a542eb8d701ca66227b53ce320acca { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor' } +C3N-00496.RNA-Seq.chimeric.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 060c01b0-a7ff-4c61-90c8-03f4b7d8a087.rna_seq.chimeric.gdc_realn.bam 70464722 BAM chimeric harmonized CPTAC3 bce6d269-a86a-4c4b-8299-11aad2fc4114 40aa20a6749b600573781cfc0373f7e7 { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor' } +C3N-00496.RNA-Seq.genomic.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 060c01b0-a7ff-4c61-90c8-03f4b7d8a087.rna_seq.genomic.gdc_realn.bam 8681351149 BAM genomic harmonized CPTAC3 a51924e4-7bef-459a-9743-745995b62ac4 e52b807ba0ca129a6858b53fa416102b { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor' } +C3N-00496.RNA-Seq.R1_L008.T C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R1_001.fastq.gz 4028324968 FASTQ R1_L008 unaligned CPTAC3 13b9c739-e5c8-4a14-9a77-8b2375da111f f2715831e82b75188181e53302f73a33 { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00496.RNA-Seq.R2_L008.T C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 210105_UNC32-K00270_0269_BHKN5MBBXY_CCGCGGTT-AGCGCTAG_S30_L008_R2_001.fastq.gz 4734387379 FASTQ R2_L008 unaligned CPTAC3 dbe21c0a-6051-4be1-ae32-1637b875cf8a a5a11ef51d1ea2ad24fc1acc7391f902 { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00496.RNA-Seq.transcriptome.T.hg38 C3N-00496 CCRCC RNA-Seq tumor CPT0379630012 060c01b0-a7ff-4c61-90c8-03f4b7d8a087.rna_seq.transcriptome.gdc_realn.bam 10786553864 BAM transcriptome harmonized CPTAC3 93c39d8d-a0a8-4c2b-983b-23a239cc1e2e 0cdd782a24465de5a2a98644b2c3e5a6 { 'aliquot_tag': 'ALQ_d8fbe662', 'gdc_sample_type': 'Primary Tumor' } C3N-00496.WGS.N C3N-00496 CCRCC WGS blood_normal CPT0379730002 CPT0379730002.WholeGenome.RP-2158.bam 23907424056 BAM aligned CPTAC3 52a3b6b0-ed63-48d9-af5c-4334b7ccc62b 68f2d27f6550ab035f2cdadb45f344dc { 'aliquot_tag': 'ALQ_abc0486', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00496.WGS.N.hg38 C3N-00496 CCRCC WGS blood_normal CPT0379730002 6672269a-f6f7-41a6-b611-39ba4502662b_wgs_gdc_realn.bam 71732320668 BAM harmonized CPTAC3 4882c3f4-e219-4aee-9e91-db3566038fad 50465af76a7bb715ed85321829529fb2 { 'aliquot_tag': 'ALQ_abc0486', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00496.WGS.T C3N-00496 CCRCC WGS tumor CPT0379630015 CPT0379630015.WholeGenome.RP-2158.bam 31784922699 BAM aligned CPTAC3 7a28d89b-36ad-4b85-a7a8-06fe6384c18d bc0dd4d59573f9cc218d20b175a191fc { 'aliquot_tag': 'ALQ_469f73c1', 'gdc_sample_type': 'Primary Tumor' } @@ -21091,12 +22859,12 @@ C3N-00497.miRNA-Seq.T C3N-00497 LSCC miRNA-Seq tumor CPT0079100006 181012_UNC32- C3N-00497.miRNA-Seq.T.hg38 C3N-00497 LSCC miRNA-Seq tumor CPT0079100006 3ec8b324-9ba4-4e6c-a1f9-4b041e09a076_mirnaseq_gdc_realn.bam 296970992 BAM harmonized CPTAC3 a377ec3b-3256-4ba6-b461-8f8ff634a45c e2fc7ce01368b97fb8c863f2b87429ab { 'aliquot_tag': 'ALQ_a5a56597', 'gdc_sample_type': 'Primary Tumor' } C3N-00497.RNA-Seq.chimeric.A.hg38 C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 eb660889-0075-4f0d-ae2e-868616f02be3.rna_seq.chimeric.gdc_realn.bam 53866959 BAM chimeric harmonized CPTAC3 64f60796-94e6-4a4c-a96e-830c274905d9 c2d0f7a479b84ea880316ea0184a6643 { 'aliquot_tag': 'ALQ_98c54c27', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00497.RNA-Seq.chimeric.T.hg38 C3N-00497 LSCC RNA-Seq tumor CPT0079100006 9ebeec49-dfc2-4f4b-86b4-ae10e9038d0c.rna_seq.chimeric.gdc_realn.bam 147968321 BAM chimeric harmonized CPTAC3 ad76f466-8de4-41c7-ab32-818673709413 6366ac4ffa9182a3c504bea5bb6f6e32 { 'aliquot_tag': 'ALQ_a5a56597', 'gdc_sample_type': 'Primary Tumor' } -C3N-00497.RNA-Seq.genomic.A.hg38 C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 eb660889-0075-4f0d-ae2e-868616f02be3.rna_seq.genomic.gdc_realn.bam 10107793879 BAM genomic harmonized CPTAC3 8643875c-df59-4f9c-82c9-b9cb21e0bd71 28b40e6f8f4997ed5464d1d6cca75801 { 'aliquot_tag': 'ALQ_98c54c27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00497.RNA-Seq.genomic.A.hg38 C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 eb660889-0075-4f0d-ae2e-868616f02be3.rna_seq.genomic.gdc_realn.bam 10107793879 BAM genomic harmonized CPTAC3 e739c349-7952-4d7a-b6d7-cae90849241c 28b40e6f8f4997ed5464d1d6cca75801 { 'aliquot_tag': 'ALQ_98c54c27', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00497.RNA-Seq.genomic.T.hg38 C3N-00497 LSCC RNA-Seq tumor CPT0079100006 9ebeec49-dfc2-4f4b-86b4-ae10e9038d0c.rna_seq.genomic.gdc_realn.bam 9344228972 BAM genomic harmonized CPTAC3 4ad11ca3-8fde-4e54-b4f1-fc8c23b4e5d8 246e7f2bfc3a8fc59845c2f684e06c9f { 'aliquot_tag': 'ALQ_a5a56597', 'gdc_sample_type': 'Primary Tumor' } -C3N-00497.RNA-Seq.R1_L001.T C3N-00497 LSCC RNA-Seq tumor CPT0079100006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4060660495 FASTQ R1_L001 unaligned CPTAC3 3abcf0ae-6cf0-4ad4-9818-824fc91c3f22 a7c56aa4e02c72dfa23f2073bcb1ab9d { 'aliquot_tag': 'ALQ_a5a56597', 'gdc_sample_type': 'Primary Tumor' } -C3N-00497.RNA-Seq.R1_L005.A C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 180516_UNC32-K00270_0095_AHTY5LBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4379456928 FASTQ R1_L005 unaligned CPTAC3 19a19ac1-2b61-496f-9ed2-fdc9ed5513ac c66ad2bf489457bb4268c451ebaa9586 { 'aliquot_tag': 'ALQ_98c54c27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00497.RNA-Seq.R2_L001.T C3N-00497 LSCC RNA-Seq tumor CPT0079100006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4537007198 FASTQ R2_L001 unaligned CPTAC3 fa89125b-2e2a-42a5-bfdd-471f7b71f0a4 962601f19206d889f9ede55493291fe5 { 'aliquot_tag': 'ALQ_a5a56597', 'gdc_sample_type': 'Primary Tumor' } -C3N-00497.RNA-Seq.R2_L005.A C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 180516_UNC32-K00270_0095_AHTY5LBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4992615080 FASTQ R2_L005 unaligned CPTAC3 dd7d88a3-7b64-4f73-ae34-3d7b2e623cb0 953ed51451aadbd7fff5cef4b9eb9b97 { 'aliquot_tag': 'ALQ_98c54c27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00497.RNA-Seq.R1_L001.T C3N-00497 LSCC RNA-Seq tumor CPT0079100006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4060660495 FASTQ R1_L001 unaligned CPTAC3 3abcf0ae-6cf0-4ad4-9818-824fc91c3f22 a7c56aa4e02c72dfa23f2073bcb1ab9d { 'aliquot_tag': 'ALQ_a5a56597', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00497.RNA-Seq.R1_L005.A C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 180516_UNC32-K00270_0095_AHTY5LBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4379456928 FASTQ R1_L005 unaligned CPTAC3 19a19ac1-2b61-496f-9ed2-fdc9ed5513ac c66ad2bf489457bb4268c451ebaa9586 { 'aliquot_tag': 'ALQ_98c54c27', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00497.RNA-Seq.R2_L001.T C3N-00497 LSCC RNA-Seq tumor CPT0079100006 170905_UNC31-K00269_0079_AHLCF7BBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4537007198 FASTQ R2_L001 unaligned CPTAC3 fa89125b-2e2a-42a5-bfdd-471f7b71f0a4 962601f19206d889f9ede55493291fe5 { 'aliquot_tag': 'ALQ_a5a56597', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00497.RNA-Seq.R2_L005.A C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 180516_UNC32-K00270_0095_AHTY5LBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4992615080 FASTQ R2_L005 unaligned CPTAC3 dd7d88a3-7b64-4f73-ae34-3d7b2e623cb0 953ed51451aadbd7fff5cef4b9eb9b97 { 'aliquot_tag': 'ALQ_98c54c27', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-00497.RNA-Seq.transcriptome.A.hg38 C3N-00497 LSCC RNA-Seq tissue_normal CPT0079110006 eb660889-0075-4f0d-ae2e-868616f02be3.rna_seq.transcriptome.gdc_realn.bam 11641702332 BAM transcriptome harmonized CPTAC3 935b302c-dc17-49ef-87c2-fcbd02558813 8d6e7199495ffa19ee9b3f83502c87e6 { 'aliquot_tag': 'ALQ_98c54c27', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00497.RNA-Seq.transcriptome.T.hg38 C3N-00497 LSCC RNA-Seq tumor CPT0079100006 9ebeec49-dfc2-4f4b-86b4-ae10e9038d0c.rna_seq.transcriptome.gdc_realn.bam 10878842005 BAM transcriptome harmonized CPTAC3 50b8f4f2-0fc8-4082-b8ee-91e76f95dc6a 7cfc1adf619fdca6fa61a32776239b40 { 'aliquot_tag': 'ALQ_a5a56597', 'gdc_sample_type': 'Primary Tumor' } C3N-00497.WGS.A C3N-00497 LSCC WGS tissue_normal CPT0079110009 CPT0079110009.WholeGenome.RP-1303.bam 56550526318 BAM aligned CPTAC3 a60441c3-bc4a-4f53-be46-370abe0a2736 d92fb134bf78c7e4df6a29821c356f6f { 'aliquot_tag': 'ALQ_87a51b6', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21120,11 +22888,11 @@ C3N-00498.miRNA-Seq.T.hg38 C3N-00498 HNSCC miRNA-Seq tumor CPT0013000007 312697f C3N-00498.RNA-Seq.chimeric.A.hg38 C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 8f20dc73-e3c2-41d2-9a5a-35d8d9b6a788.rna_seq.chimeric.gdc_realn.bam 23225826 BAM chimeric harmonized CPTAC3 0cc87447-2554-4629-a1a3-7d4b7eb4fde8 d61f50b32672c3dfc1b267b876812ce7 { 'aliquot_tag': 'ALQ_bb3e0e5f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00498.RNA-Seq.chimeric.T.hg38 C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 8c5a96d6-2665-4ca9-abb1-719e8d841b60.rna_seq.chimeric.gdc_realn.bam 78981889 BAM chimeric harmonized CPTAC3 8bdfa029-8ff8-4be0-8f4c-57ce4f465a8a 0b612eec310084b31dd307c609ff7e60 { 'aliquot_tag': 'ALQ_7be1d06d', 'gdc_sample_type': 'Primary Tumor' } C3N-00498.RNA-Seq.genomic.A.hg38 C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 8f20dc73-e3c2-41d2-9a5a-35d8d9b6a788.rna_seq.genomic.gdc_realn.bam 8385912780 BAM genomic harmonized CPTAC3 539009af-7588-41aa-baa4-d56452f2604c c8ee97e6b3775b0bb39f3c69cc82d21f { 'aliquot_tag': 'ALQ_bb3e0e5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00498.RNA-Seq.genomic.T.hg38 C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 8c5a96d6-2665-4ca9-abb1-719e8d841b60.rna_seq.genomic.gdc_realn.bam 9737670945 BAM genomic harmonized CPTAC3 8912abbb-e37b-4bee-8244-55e30f2fc4bc 08ba1aaa61b793c9fde7eec6f2a30e5b { 'aliquot_tag': 'ALQ_7be1d06d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00498.RNA-Seq.R1_L008.A C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTTGA_S31_L008_R1_001.fastq.gz 3226531265 FASTQ R1_L008 unaligned CPTAC3 b670d3bf-a39b-4b8e-9a5e-232772b9939f 9caed3388abe7eeadb77a123af71c7f3 { 'aliquot_tag': 'ALQ_bb3e0e5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00498.RNA-Seq.R1_L008.T C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 170823_UNC31-K00269_0076_BHLCTFBBXX_ATGTCA_S11_L008_R1_001.fastq.gz 4273765686 FASTQ R1_L008 unaligned CPTAC3 ed67a97a-0690-4901-88ca-439c5ab6bc7d 2dcbef9ef6b214ef733d274aee615875 { 'aliquot_tag': 'ALQ_7be1d06d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00498.RNA-Seq.R2_L008.A C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTTGA_S31_L008_R2_001.fastq.gz 3494017219 FASTQ R2_L008 unaligned CPTAC3 02d65ea6-0dbe-4412-902c-b2fd19487593 f8f374cca7375b087b2c62648fff3b03 { 'aliquot_tag': 'ALQ_bb3e0e5f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00498.RNA-Seq.R2_L008.T C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 170823_UNC31-K00269_0076_BHLCTFBBXX_ATGTCA_S11_L008_R2_001.fastq.gz 4672445899 FASTQ R2_L008 unaligned CPTAC3 888acb67-c9e7-40ee-a6c6-3c0e18a7ffc1 f3df04c2832debcf79bbc2e034728259 { 'aliquot_tag': 'ALQ_7be1d06d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00498.RNA-Seq.genomic.T.hg38 C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 8c5a96d6-2665-4ca9-abb1-719e8d841b60.rna_seq.genomic.gdc_realn.bam 9737670945 BAM genomic harmonized CPTAC3 cbcf2eac-280f-4ad1-960f-f42f96843a90 08ba1aaa61b793c9fde7eec6f2a30e5b { 'aliquot_tag': 'ALQ_7be1d06d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00498.RNA-Seq.R1_L008.A C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTTGA_S31_L008_R1_001.fastq.gz 3226531265 FASTQ R1_L008 unaligned CPTAC3 b670d3bf-a39b-4b8e-9a5e-232772b9939f 9caed3388abe7eeadb77a123af71c7f3 { 'aliquot_tag': 'ALQ_bb3e0e5f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00498.RNA-Seq.R1_L008.T C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 170823_UNC31-K00269_0076_BHLCTFBBXX_ATGTCA_S11_L008_R1_001.fastq.gz 4273765686 FASTQ R1_L008 unaligned CPTAC3 ed67a97a-0690-4901-88ca-439c5ab6bc7d 2dcbef9ef6b214ef733d274aee615875 { 'aliquot_tag': 'ALQ_7be1d06d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00498.RNA-Seq.R2_L008.A C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 180606_UNC32-K00270_0097_AHVCKFBBXX_ACTTGA_S31_L008_R2_001.fastq.gz 3494017219 FASTQ R2_L008 unaligned CPTAC3 02d65ea6-0dbe-4412-902c-b2fd19487593 f8f374cca7375b087b2c62648fff3b03 { 'aliquot_tag': 'ALQ_bb3e0e5f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00498.RNA-Seq.R2_L008.T C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 170823_UNC31-K00269_0076_BHLCTFBBXX_ATGTCA_S11_L008_R2_001.fastq.gz 4672445899 FASTQ R2_L008 unaligned CPTAC3 888acb67-c9e7-40ee-a6c6-3c0e18a7ffc1 f3df04c2832debcf79bbc2e034728259 { 'aliquot_tag': 'ALQ_7be1d06d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00498.RNA-Seq.transcriptome.A.hg38 C3N-00498 HNSCC RNA-Seq tissue_normal CPT0013030010 8f20dc73-e3c2-41d2-9a5a-35d8d9b6a788.rna_seq.transcriptome.gdc_realn.bam 8855972111 BAM transcriptome harmonized CPTAC3 447a1bfb-4735-4b85-a03e-4f123173b287 2c6615197316e22ceede1e0772120ce3 { 'aliquot_tag': 'ALQ_bb3e0e5f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00498.RNA-Seq.transcriptome.T.hg38 C3N-00498 HNSCC RNA-Seq tumor CPT0013000007 8c5a96d6-2665-4ca9-abb1-719e8d841b60.rna_seq.transcriptome.gdc_realn.bam 10255674919 BAM transcriptome harmonized CPTAC3 b74b7baa-9a18-448d-92f8-08f712388fb1 eff021795000c4f11047ed1807c64f18 { 'aliquot_tag': 'ALQ_7be1d06d', 'gdc_sample_type': 'Primary Tumor' } C3N-00498.WGS.N C3N-00498 HNSCC WGS blood_normal CPT0013090002 CPT0013090002.WholeGenome.RP-1303.bam 66029020313 BAM aligned CPTAC3 f32c041e-8ccc-4192-ac65-55c8fc935ad7 3904a3f976c43652a48f83856deab604 { 'aliquot_tag': 'ALQ_69b4693', 'gdc_sample_type': 'Blood Derived Normal' } @@ -21144,9 +22912,9 @@ C3N-00511.ADD_4da693fd.WXS.T.hg38 C3N-00511 PDA WXS tumor CPT0078250006 d1efcc85 C3N-00511.miRNA-Seq.T C3N-00511 PDA miRNA-Seq tumor CPT0078250009 181012_UNC32-K00270_0124_AH223CBBXY_GGTAGC_S44_L007_R1_001.unaln.bam 217571620 BAM unaligned CPTAC3 e4bec376-0b91-45a4-91a0-84922554953b 37d3f83ff703ddd66c40b6db4c605da8 { 'aliquot_tag': 'ALQ_dd198e6c', 'gdc_sample_type': 'Primary Tumor' } C3N-00511.miRNA-Seq.T.hg38 C3N-00511 PDA miRNA-Seq tumor CPT0078250009 88ca37fc-eb00-4de2-ac83-fc2c4a9149fd_mirnaseq_gdc_realn.bam 241752415 BAM harmonized CPTAC3 29b35319-424f-4568-93aa-84d9384ff37f 9007d4e163f39ed5a7676a221a8d6882 { 'aliquot_tag': 'ALQ_dd198e6c', 'gdc_sample_type': 'Primary Tumor' } C3N-00511.RNA-Seq.chimeric.T.hg38 C3N-00511 PDA RNA-Seq tumor CPT0078250009 97a32905-48ea-42ec-8a16-a627eb7ca234.rna_seq.chimeric.gdc_realn.bam 69530481 BAM chimeric harmonized CPTAC3 e18d131e-9601-481d-9901-144abdb9d36b 2c878cbca7582f34fc1ba7e757a63add { 'aliquot_tag': 'ALQ_dd198e6c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00511.RNA-Seq.genomic.T.hg38 C3N-00511 PDA RNA-Seq tumor CPT0078250009 97a32905-48ea-42ec-8a16-a627eb7ca234.rna_seq.genomic.gdc_realn.bam 8063179150 BAM genomic harmonized CPTAC3 5d63ec36-e55d-4a4d-8521-a3884edc37b6 62010dd79da8b26c4d3d4fbd38b93234 { 'aliquot_tag': 'ALQ_dd198e6c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00511.RNA-Seq.R1_L007.T C3N-00511 PDA RNA-Seq tumor CPT0078250009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3618545492 FASTQ R1_L007 unaligned CPTAC3 7981a9cf-0215-4cf5-99d0-de2f99fb25cc b393b2210c0d4b8857185d584c2dcd14 { 'aliquot_tag': 'ALQ_dd198e6c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00511.RNA-Seq.R2_L007.T C3N-00511 PDA RNA-Seq tumor CPT0078250009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 3905021077 FASTQ R2_L007 unaligned CPTAC3 e66fe6f2-9722-41a3-baf7-dd9c097a090a 5b30c795eb3e7d5a7ff7583dfe9549e2 { 'aliquot_tag': 'ALQ_dd198e6c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00511.RNA-Seq.genomic.T.hg38 C3N-00511 PDA RNA-Seq tumor CPT0078250009 97a32905-48ea-42ec-8a16-a627eb7ca234.rna_seq.genomic.gdc_realn.bam 8063179150 BAM genomic harmonized CPTAC3 012d4018-7beb-46c6-be39-395c8f009559 62010dd79da8b26c4d3d4fbd38b93234 { 'aliquot_tag': 'ALQ_dd198e6c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00511.RNA-Seq.R1_L007.T C3N-00511 PDA RNA-Seq tumor CPT0078250009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3618545492 FASTQ R1_L007 unaligned CPTAC3 7981a9cf-0215-4cf5-99d0-de2f99fb25cc b393b2210c0d4b8857185d584c2dcd14 { 'aliquot_tag': 'ALQ_dd198e6c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00511.RNA-Seq.R2_L007.T C3N-00511 PDA RNA-Seq tumor CPT0078250009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 3905021077 FASTQ R2_L007 unaligned CPTAC3 e66fe6f2-9722-41a3-baf7-dd9c097a090a 5b30c795eb3e7d5a7ff7583dfe9549e2 { 'aliquot_tag': 'ALQ_dd198e6c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00511.RNA-Seq.transcriptome.T.hg38 C3N-00511 PDA RNA-Seq tumor CPT0078250009 97a32905-48ea-42ec-8a16-a627eb7ca234.rna_seq.transcriptome.gdc_realn.bam 9231772618 BAM transcriptome harmonized CPTAC3 3a60feed-8655-41f1-bc95-3b573dba85ff 7e17ec6af665d33e930cba700fd07958 { 'aliquot_tag': 'ALQ_dd198e6c', 'gdc_sample_type': 'Primary Tumor' } C3N-00511.WGS.N C3N-00511 PDA WGS blood_normal CPT0078310002 CPT0078310002.WholeGenome.RP-1303.bam 65114654545 BAM aligned CPTAC3 b956585d-ab87-4cd3-8771-d230d9c4a9e8 b1b8417882a827c8aef44ccd5641664e { 'aliquot_tag': 'ALQ_74172281', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00511.WGS.N.hg38 C3N-00511 PDA WGS blood_normal CPT0078310002 4769f91e-a396-48e9-a979-2ea2ad5b550c_gdc_realn.bam 95883555582 BAM harmonized CPTAC3 889fd6db-ed7b-4aa8-bc73-baa7ee9db36f 877e7033499e8da2133c820dfc88bd05 { 'aliquot_tag': 'ALQ_74172281', 'gdc_sample_type': 'Blood Derived Normal' } @@ -21161,9 +22929,9 @@ C3N-00512.MethArray.Red.T C3N-00512 PDA Methylation Array tumor CPT0078160007 20 C3N-00512.miRNA-Seq.T C3N-00512 PDA miRNA-Seq tumor CPT0078160010 181012_UNC32-K00270_0124_AH223CBBXY_GAGTGG_S43_L007_R1_001.unaln.bam 240414480 BAM unaligned CPTAC3 76da2922-5dec-4e3d-97e0-35648713d4ac 9b5fe60d32c307ce4e05ea3ee21ae50c { 'aliquot_tag': 'ALQ_7cea0ff7', 'gdc_sample_type': 'Primary Tumor' } C3N-00512.miRNA-Seq.T.hg38 C3N-00512 PDA miRNA-Seq tumor CPT0078160010 6ead8a40-477d-49fe-88fa-233ce457e7bc_mirnaseq_gdc_realn.bam 270210259 BAM harmonized CPTAC3 7f6f91ac-0060-48f8-a242-e0ea953334f6 5fa23a2bcce6c4747d12d0695e9317d1 { 'aliquot_tag': 'ALQ_7cea0ff7', 'gdc_sample_type': 'Primary Tumor' } C3N-00512.RNA-Seq.chimeric.T.hg38 C3N-00512 PDA RNA-Seq tumor CPT0078160010 f942e6d6-f697-4141-8f1c-58933ca81751.rna_seq.chimeric.gdc_realn.bam 82329490 BAM chimeric harmonized CPTAC3 79377655-347a-41fb-a8f6-86353f338643 d27a7f82818bad052c2af5c4546ee7e4 { 'aliquot_tag': 'ALQ_7cea0ff7', 'gdc_sample_type': 'Primary Tumor' } -C3N-00512.RNA-Seq.genomic.T.hg38 C3N-00512 PDA RNA-Seq tumor CPT0078160010 f942e6d6-f697-4141-8f1c-58933ca81751.rna_seq.genomic.gdc_realn.bam 11130019810 BAM genomic harmonized CPTAC3 f0fd0cf4-bef8-4b64-91a8-1543701b68a6 b0c08ed2c410a6748a0c807e9c4fbe12 { 'aliquot_tag': 'ALQ_7cea0ff7', 'gdc_sample_type': 'Primary Tumor' } -C3N-00512.RNA-Seq.R1_L007.T C3N-00512 PDA RNA-Seq tumor CPT0078160010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4175780551 FASTQ R1_L007 unaligned CPTAC3 dd562d7c-a718-4244-878a-9d455ef427e8 09c41dd0a9c20fbe7558537624526ef0 { 'aliquot_tag': 'ALQ_7cea0ff7', 'gdc_sample_type': 'Primary Tumor' } -C3N-00512.RNA-Seq.R2_L007.T C3N-00512 PDA RNA-Seq tumor CPT0078160010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4512232208 FASTQ R2_L007 unaligned CPTAC3 252c7281-896e-4e57-acee-a4e3d2c17371 74b57e38d77bcc8ac102b679c18b1f73 { 'aliquot_tag': 'ALQ_7cea0ff7', 'gdc_sample_type': 'Primary Tumor' } +C3N-00512.RNA-Seq.genomic.T.hg38 C3N-00512 PDA RNA-Seq tumor CPT0078160010 f942e6d6-f697-4141-8f1c-58933ca81751.rna_seq.genomic.gdc_realn.bam 11130019810 BAM genomic harmonized CPTAC3 02782ed3-d192-42a9-bb66-affdfe329a9e b0c08ed2c410a6748a0c807e9c4fbe12 { 'aliquot_tag': 'ALQ_7cea0ff7', 'gdc_sample_type': 'Primary Tumor' } +C3N-00512.RNA-Seq.R1_L007.T C3N-00512 PDA RNA-Seq tumor CPT0078160010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L007_R1_001.fastq.gz 4175780551 FASTQ R1_L007 unaligned CPTAC3 dd562d7c-a718-4244-878a-9d455ef427e8 09c41dd0a9c20fbe7558537624526ef0 { 'aliquot_tag': 'ALQ_7cea0ff7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00512.RNA-Seq.R2_L007.T C3N-00512 PDA RNA-Seq tumor CPT0078160010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4512232208 FASTQ R2_L007 unaligned CPTAC3 252c7281-896e-4e57-acee-a4e3d2c17371 74b57e38d77bcc8ac102b679c18b1f73 { 'aliquot_tag': 'ALQ_7cea0ff7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00512.RNA-Seq.transcriptome.T.hg38 C3N-00512 PDA RNA-Seq tumor CPT0078160010 f942e6d6-f697-4141-8f1c-58933ca81751.rna_seq.transcriptome.gdc_realn.bam 10770391237 BAM transcriptome harmonized CPTAC3 6cb57faa-c17e-45b9-a2d3-c66fc006ac64 3a85453c461c5131c94b37c9969f783d { 'aliquot_tag': 'ALQ_7cea0ff7', 'gdc_sample_type': 'Primary Tumor' } C3N-00512.WGS.A C3N-00512 PDA WGS tissue_normal CPT0078180006 CPT0078180006.WholeGenome.RP-1303.bam 58868764711 BAM aligned CPTAC3 2bed83a4-ae5b-4eec-83bd-f3af48429635 59c0aed05c6826a3534689897f357b14 { 'aliquot_tag': 'ALQ_33a225e2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00512.WGS.A.hg38 C3N-00512 PDA WGS tissue_normal CPT0078180006 4c0eab19-fc9a-4c28-a7f1-b75ba0c41127_wgs_gdc_realn.bam 88236657574 BAM harmonized CPTAC3 8a8c7167-a577-4c7b-954b-908da4effb4f 0a911c06aee6e6c59793816d4c7390ba { 'aliquot_tag': 'ALQ_33a225e2', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21188,9 +22956,9 @@ C3N-00513.MethArray.Red.T C3N-00513 PDA Methylation Array tumor CPT0077790007 20 C3N-00513.miRNA-Seq.T C3N-00513 PDA miRNA-Seq tumor CPT0077790010 181012_UNC32-K00270_0124_AH223CBBXY_GTCCGC_S39_L007_R1_001.unaln.bam 260368864 BAM unaligned CPTAC3 98abf75c-c81c-4d9a-bb3b-7a345c5fb37a eb22c84cb29ef9f19b72db5ee7f1064d { 'aliquot_tag': 'ALQ_deab0bd2', 'gdc_sample_type': 'Primary Tumor' } C3N-00513.miRNA-Seq.T.hg38 C3N-00513 PDA miRNA-Seq tumor CPT0077790010 743ea3ca-3314-48f3-ad3d-226e6ea5a6c9_mirnaseq_gdc_realn.bam 288697793 BAM harmonized CPTAC3 7c28263e-f4cc-4b08-8ed6-f95438427b37 e64f515b82465e56e4bf3dc3d413aa2f { 'aliquot_tag': 'ALQ_deab0bd2', 'gdc_sample_type': 'Primary Tumor' } C3N-00513.RNA-Seq.chimeric.T.hg38 C3N-00513 PDA RNA-Seq tumor CPT0077790010 8532f910-fa71-4831-aec8-ac6a57655f59.rna_seq.chimeric.gdc_realn.bam 67750820 BAM chimeric harmonized CPTAC3 5b27acd3-273b-4c0e-966c-1006e9c3c185 775758473f9fdf931560f301c8427c14 { 'aliquot_tag': 'ALQ_deab0bd2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00513.RNA-Seq.genomic.T.hg38 C3N-00513 PDA RNA-Seq tumor CPT0077790010 8532f910-fa71-4831-aec8-ac6a57655f59.rna_seq.genomic.gdc_realn.bam 7724467128 BAM genomic harmonized CPTAC3 33ea80a3-cff7-4f90-a2d6-1c66f9104f4d 86c644ef917fa52705b99a36d66789c1 { 'aliquot_tag': 'ALQ_deab0bd2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00513.RNA-Seq.R1_L008.T C3N-00513 PDA RNA-Seq tumor CPT0077790010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3548500935 FASTQ R1_L008 unaligned CPTAC3 9a816fe4-a1f8-4321-86a2-1a09419b0942 d16f66a264f59cbe4718078c8715cc6d { 'aliquot_tag': 'ALQ_deab0bd2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00513.RNA-Seq.R2_L008.T C3N-00513 PDA RNA-Seq tumor CPT0077790010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L008_R2_001.fastq.gz 3930731261 FASTQ R2_L008 unaligned CPTAC3 37f1f57f-09e3-47d4-a92e-dfdbbfeac63c 7fe622a5d9934b3ed9552d5e90a6aa82 { 'aliquot_tag': 'ALQ_deab0bd2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00513.RNA-Seq.genomic.T.hg38 C3N-00513 PDA RNA-Seq tumor CPT0077790010 8532f910-fa71-4831-aec8-ac6a57655f59.rna_seq.genomic.gdc_realn.bam 7724467128 BAM genomic harmonized CPTAC3 d4fd86c6-bf72-47f9-82aa-6e9ca6b958fb 86c644ef917fa52705b99a36d66789c1 { 'aliquot_tag': 'ALQ_deab0bd2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00513.RNA-Seq.R1_L008.T C3N-00513 PDA RNA-Seq tumor CPT0077790010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3548500935 FASTQ R1_L008 unaligned CPTAC3 9a816fe4-a1f8-4321-86a2-1a09419b0942 d16f66a264f59cbe4718078c8715cc6d { 'aliquot_tag': 'ALQ_deab0bd2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00513.RNA-Seq.R2_L008.T C3N-00513 PDA RNA-Seq tumor CPT0077790010 170906_UNC32-K00270_0058_BHLJ7FBBXX_CGTACG_S5_L008_R2_001.fastq.gz 3930731261 FASTQ R2_L008 unaligned CPTAC3 37f1f57f-09e3-47d4-a92e-dfdbbfeac63c 7fe622a5d9934b3ed9552d5e90a6aa82 { 'aliquot_tag': 'ALQ_deab0bd2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00513.RNA-Seq.transcriptome.T.hg38 C3N-00513 PDA RNA-Seq tumor CPT0077790010 8532f910-fa71-4831-aec8-ac6a57655f59.rna_seq.transcriptome.gdc_realn.bam 10481938775 BAM transcriptome harmonized CPTAC3 494c03ec-ad63-4248-995b-8dab40d2214e dd32d62359a46ac039b582fad9c529fa { 'aliquot_tag': 'ALQ_deab0bd2', 'gdc_sample_type': 'Primary Tumor' } C3N-00513.WGS.A C3N-00513 PDA WGS tissue_normal CPT0077810006 CPT0077810006.WholeGenome.RP-1303.bam 63345650267 BAM aligned CPTAC3 2354c360-cf25-47bf-86a9-0758742796d9 19f3fd6efeef02d4fb2e0f3fdfd9843d { 'aliquot_tag': 'ALQ_eff566b2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00513.WGS.A.hg38 C3N-00513 PDA WGS tissue_normal CPT0077810006 e26a9e7f-9f44-4c9f-9253-52a84df141f0_wgs_gdc_realn.bam 92091237374 BAM harmonized CPTAC3 af2c7cec-604c-41e9-8b9b-253021002ddb dc6af1f74ea5c9a8247babd7efdbcfd2 { 'aliquot_tag': 'ALQ_eff566b2', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21216,8 +22984,8 @@ C3N-00514.miRNA-Seq.T C3N-00514 PDA miRNA-Seq tumor CPT0077930010 181012_UNC32-K C3N-00514.miRNA-Seq.T.hg38 C3N-00514 PDA miRNA-Seq tumor CPT0077930010 2de9af35-d95f-4b71-be2d-39a4472bb5e7_mirnaseq_gdc_realn.bam 270692019 BAM harmonized CPTAC3 7ef851bb-45b5-4252-93e8-490b0d882c93 eb7ca863bb1281dd885066c551b05ff6 { 'aliquot_tag': 'ALQ_ae117203', 'gdc_sample_type': 'Primary Tumor' } C3N-00514.RNA-Seq.chimeric.T.hg38 C3N-00514 PDA RNA-Seq tumor CPT0077930010 cd808d45-bf55-437e-b512-6943d9b565dc.rna_seq.chimeric.gdc_realn.bam 114439147 BAM chimeric harmonized CPTAC3 ffb29185-6f08-4f12-b58e-51774a20acfb c97a99a6fb9889ed656dc79142744a09 { 'aliquot_tag': 'ALQ_ae117203', 'gdc_sample_type': 'Primary Tumor' } C3N-00514.RNA-Seq.genomic.T.hg38 C3N-00514 PDA RNA-Seq tumor CPT0077930010 cd808d45-bf55-437e-b512-6943d9b565dc.rna_seq.genomic.gdc_realn.bam 8488387689 BAM genomic harmonized CPTAC3 6eda5a5f-bb84-4899-9970-a2c339d7b834 6721266734ef99e2a623e9570d50fa87 { 'aliquot_tag': 'ALQ_ae117203', 'gdc_sample_type': 'Primary Tumor' } -C3N-00514.RNA-Seq.R1_L008.T C3N-00514 PDA RNA-Seq tumor CPT0077930010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4160549605 FASTQ R1_L008 unaligned CPTAC3 df3495d5-2f0d-4526-bf38-dfebb44761e1 87630c0349e8ea4b3fac38b084ce31a7 { 'aliquot_tag': 'ALQ_ae117203', 'gdc_sample_type': 'Primary Tumor' } -C3N-00514.RNA-Seq.R2_L008.T C3N-00514 PDA RNA-Seq tumor CPT0077930010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4536583147 FASTQ R2_L008 unaligned CPTAC3 85ffbcee-b637-47c6-9537-651279b1acc0 f965ef6f109faa46f9fc56fc4b311643 { 'aliquot_tag': 'ALQ_ae117203', 'gdc_sample_type': 'Primary Tumor' } +C3N-00514.RNA-Seq.R1_L008.T C3N-00514 PDA RNA-Seq tumor CPT0077930010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L008_R1_001.fastq.gz 4160549605 FASTQ R1_L008 unaligned CPTAC3 df3495d5-2f0d-4526-bf38-dfebb44761e1 87630c0349e8ea4b3fac38b084ce31a7 { 'aliquot_tag': 'ALQ_ae117203', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00514.RNA-Seq.R2_L008.T C3N-00514 PDA RNA-Seq tumor CPT0077930010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACTGAT_S8_L008_R2_001.fastq.gz 4536583147 FASTQ R2_L008 unaligned CPTAC3 85ffbcee-b637-47c6-9537-651279b1acc0 f965ef6f109faa46f9fc56fc4b311643 { 'aliquot_tag': 'ALQ_ae117203', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00514.RNA-Seq.transcriptome.T.hg38 C3N-00514 PDA RNA-Seq tumor CPT0077930010 cd808d45-bf55-437e-b512-6943d9b565dc.rna_seq.transcriptome.gdc_realn.bam 11622572283 BAM transcriptome harmonized CPTAC3 1d0303a7-131a-4bd9-8e2b-53f4bddf9133 e3dc2ae64044d6a7e0e2e9ba63543e2f { 'aliquot_tag': 'ALQ_ae117203', 'gdc_sample_type': 'Primary Tumor' } C3N-00514.WGS.A C3N-00514 PDA WGS tissue_normal CPT0077950006 CPT0077950006.WholeGenome.RP-1303.bam 55058915137 BAM aligned CPTAC3 2645d72d-2386-4de4-8b49-f98f305885e2 d1f62eb871ea0de66cc0085b57aff744 { 'aliquot_tag': 'ALQ_d12913d7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00514.WGS.A.hg38 C3N-00514 PDA WGS tissue_normal CPT0077950006 08d75710-044f-4ac0-af82-e0fcbae50aa3_wgs_gdc_realn.bam 80072088272 BAM harmonized CPTAC3 77392c85-8724-4890-800b-3e71210b9483 c6ea16e22f07356bd4b03f9f033120c1 { 'aliquot_tag': 'ALQ_d12913d7', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21240,9 +23008,9 @@ C3N-00516.MethArray.Red.T C3N-00516 PDA Methylation Array tumor CPT0078090007 20 C3N-00516.miRNA-Seq.T C3N-00516 PDA miRNA-Seq tumor CPT0078090010 181012_UNC32-K00270_0124_AH223CBBXY_CGTACG_S42_L007_R1_001.unaln.bam 241523360 BAM unaligned CPTAC3 f53e9269-bd23-4eb1-9125-f0b9578d753d 639c8bafb5f7193869a412d1c0fbdaad { 'aliquot_tag': 'ALQ_35e64b83', 'gdc_sample_type': 'Primary Tumor' } C3N-00516.miRNA-Seq.T.hg38 C3N-00516 PDA miRNA-Seq tumor CPT0078090010 421d7885-90fc-447d-92f9-5c8278ab5a7d_mirnaseq_gdc_realn.bam 265110152 BAM harmonized CPTAC3 b1ffcf57-3bff-4bca-b875-6de377cafe1a 7b14afd773f66d2865af0f85f4f4fef4 { 'aliquot_tag': 'ALQ_35e64b83', 'gdc_sample_type': 'Primary Tumor' } C3N-00516.RNA-Seq.chimeric.T.hg38 C3N-00516 PDA RNA-Seq tumor CPT0078090010 161b084a-1294-4723-a10e-45940761bb18.rna_seq.chimeric.gdc_realn.bam 55459964 BAM chimeric harmonized CPTAC3 20ee604d-de3d-420f-9384-72cdf43f6144 93f14c3b965e4873f648c11126b7f57b { 'aliquot_tag': 'ALQ_35e64b83', 'gdc_sample_type': 'Primary Tumor' } -C3N-00516.RNA-Seq.genomic.T.hg38 C3N-00516 PDA RNA-Seq tumor CPT0078090010 161b084a-1294-4723-a10e-45940761bb18.rna_seq.genomic.gdc_realn.bam 8833396423 BAM genomic harmonized CPTAC3 e84906c5-f120-4cbc-b860-fb4fc43a265a de4a008a06cbf820b49f31d989a0a20d { 'aliquot_tag': 'ALQ_35e64b83', 'gdc_sample_type': 'Primary Tumor' } -C3N-00516.RNA-Seq.R1_L007.T C3N-00516 PDA RNA-Seq tumor CPT0078090010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L007_R1_001.fastq.gz 4149193620 FASTQ R1_L007 unaligned CPTAC3 35098502-bf68-4845-88f6-4feee3e88f25 0391b6120bf27798285a396c528f3ea9 { 'aliquot_tag': 'ALQ_35e64b83', 'gdc_sample_type': 'Primary Tumor' } -C3N-00516.RNA-Seq.R2_L007.T C3N-00516 PDA RNA-Seq tumor CPT0078090010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L007_R2_001.fastq.gz 4064678475 FASTQ R2_L007 unaligned CPTAC3 9bf5bde9-e5b7-45e4-a538-be22e9514f38 8fafa6f92b5979c18d0cd02f4d53d567 { 'aliquot_tag': 'ALQ_35e64b83', 'gdc_sample_type': 'Primary Tumor' } +C3N-00516.RNA-Seq.genomic.T.hg38 C3N-00516 PDA RNA-Seq tumor CPT0078090010 161b084a-1294-4723-a10e-45940761bb18.rna_seq.genomic.gdc_realn.bam 8833396423 BAM genomic harmonized CPTAC3 6245f251-1909-44c7-920a-22675fbf65c9 de4a008a06cbf820b49f31d989a0a20d { 'aliquot_tag': 'ALQ_35e64b83', 'gdc_sample_type': 'Primary Tumor' } +C3N-00516.RNA-Seq.R1_L007.T C3N-00516 PDA RNA-Seq tumor CPT0078090010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L007_R1_001.fastq.gz 4149193620 FASTQ R1_L007 unaligned CPTAC3 35098502-bf68-4845-88f6-4feee3e88f25 0391b6120bf27798285a396c528f3ea9 { 'aliquot_tag': 'ALQ_35e64b83', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00516.RNA-Seq.R2_L007.T C3N-00516 PDA RNA-Seq tumor CPT0078090010 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATCACG_S3_L007_R2_001.fastq.gz 4064678475 FASTQ R2_L007 unaligned CPTAC3 9bf5bde9-e5b7-45e4-a538-be22e9514f38 8fafa6f92b5979c18d0cd02f4d53d567 { 'aliquot_tag': 'ALQ_35e64b83', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00516.RNA-Seq.transcriptome.T.hg38 C3N-00516 PDA RNA-Seq tumor CPT0078090010 161b084a-1294-4723-a10e-45940761bb18.rna_seq.transcriptome.gdc_realn.bam 10873307472 BAM transcriptome harmonized CPTAC3 0fe470b8-9abf-425f-8cdb-784a40039d1f 4c0c465f8cd0434aaf7189c961a1e98f { 'aliquot_tag': 'ALQ_35e64b83', 'gdc_sample_type': 'Primary Tumor' } C3N-00516.WGS.N C3N-00516 PDA WGS blood_normal CPT0078150002 CPT0078150002.WholeGenome.RP-1303.bam 80982324338 BAM aligned CPTAC3 5560b2eb-9839-4007-97c3-0e4079748bfa 30f4ba659d6570711c0a8905019cd04e { 'aliquot_tag': 'ALQ_cc5f254a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00516.WGS.N.hg38 C3N-00516 PDA WGS blood_normal CPT0078150002 2b86b6b9-96cf-4382-99a0-089499736b97_gdc_realn.bam 121111546034 BAM harmonized CPTAC3 5a8fe06d-fc16-4c58-bc99-b845d0d79683 9bd47a844deb8b1e5fdd974fdbb85050 { 'aliquot_tag': 'ALQ_cc5f254a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -21268,11 +23036,11 @@ C3N-00517.miRNA-Seq.T.hg38 C3N-00517 PDA miRNA-Seq tumor CPT0093860006 b16295b7- C3N-00517.RNA-Seq.chimeric.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 04dfe748-fcaf-498d-b4af-2ee2fcac28e0.rna_seq.chimeric.gdc_realn.bam 77595538 BAM chimeric harmonized CPTAC3 7e44709a-5a86-492a-96cd-c9eefa66393f dca84a10a3fc0d96ed37a9fd8f922a22 { 'aliquot_tag': 'ALQ_939f2f73', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00517.RNA-Seq.chimeric.T.hg38 C3N-00517 PDA RNA-Seq tumor CPT0093860006 b8a5ea19-6c72-47ed-9ebf-9774bc1196dc.rna_seq.chimeric.gdc_realn.bam 29478317 BAM chimeric harmonized CPTAC3 a85dbc7c-c166-4a0b-b1e5-9b2ad8950469 568151fc497e06472e47400b784307e8 { 'aliquot_tag': 'ALQ_bc108c83', 'gdc_sample_type': 'Primary Tumor' } C3N-00517.RNA-Seq.genomic.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 04dfe748-fcaf-498d-b4af-2ee2fcac28e0.rna_seq.genomic.gdc_realn.bam 11947885517 BAM genomic harmonized CPTAC3 8f139d30-d0d9-4e5c-84d3-803359644369 28fba244a92a5b5e49eb2fd5f338aea9 { 'aliquot_tag': 'ALQ_939f2f73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00517.RNA-Seq.genomic.T.hg38 C3N-00517 PDA RNA-Seq tumor CPT0093860006 b8a5ea19-6c72-47ed-9ebf-9774bc1196dc.rna_seq.genomic.gdc_realn.bam 9160874747 BAM genomic harmonized CPTAC3 979a4afc-6ad7-4399-82d7-652e4e76e887 03d80342653ed850c8131e8f17d42997 { 'aliquot_tag': 'ALQ_bc108c83', 'gdc_sample_type': 'Primary Tumor' } -C3N-00517.RNA-Seq.R1_L003.T C3N-00517 PDA RNA-Seq tumor CPT0093860006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 3971725330 FASTQ R1_L003 unaligned CPTAC3 6f1e129a-913a-46f8-b3a9-4e9dee4b2a79 b56a96813536d06d363256b98804c6fd { 'aliquot_tag': 'ALQ_bc108c83', 'gdc_sample_type': 'Primary Tumor' } -C3N-00517.RNA-Seq.R1_L008.A C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ATTCCT_S3_L008_R1_001.fastq.gz 5184677841 FASTQ R1_L008 unaligned CPTAC3 ea90b038-9305-4f23-9741-7b84b8e529fa e2ad6268cb69a2a47ec5e6ca616953fd { 'aliquot_tag': 'ALQ_939f2f73', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00517.RNA-Seq.R2_L003.T C3N-00517 PDA RNA-Seq tumor CPT0093860006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4428184357 FASTQ R2_L003 unaligned CPTAC3 70c40a42-439e-4c57-ad66-313287a12471 c3da0569aea560d54fdd166b31886755 { 'aliquot_tag': 'ALQ_bc108c83', 'gdc_sample_type': 'Primary Tumor' } -C3N-00517.RNA-Seq.R2_L008.A C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ATTCCT_S3_L008_R2_001.fastq.gz 5537737885 FASTQ R2_L008 unaligned CPTAC3 20b19fef-3565-4f4e-974c-cfff35111960 1bfd535642ccac9f9d981f0a27cd30bf { 'aliquot_tag': 'ALQ_939f2f73', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00517.RNA-Seq.genomic.T.hg38 C3N-00517 PDA RNA-Seq tumor CPT0093860006 b8a5ea19-6c72-47ed-9ebf-9774bc1196dc.rna_seq.genomic.gdc_realn.bam 9160874747 BAM genomic harmonized CPTAC3 4f3c81cc-0c69-4cd3-bfaf-24f1fed8188e 03d80342653ed850c8131e8f17d42997 { 'aliquot_tag': 'ALQ_bc108c83', 'gdc_sample_type': 'Primary Tumor' } +C3N-00517.RNA-Seq.R1_L003.T C3N-00517 PDA RNA-Seq tumor CPT0093860006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 3971725330 FASTQ R1_L003 unaligned CPTAC3 6f1e129a-913a-46f8-b3a9-4e9dee4b2a79 b56a96813536d06d363256b98804c6fd { 'aliquot_tag': 'ALQ_bc108c83', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00517.RNA-Seq.R1_L008.A C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ATTCCT_S3_L008_R1_001.fastq.gz 5184677841 FASTQ R1_L008 unaligned CPTAC3 ea90b038-9305-4f23-9741-7b84b8e529fa e2ad6268cb69a2a47ec5e6ca616953fd { 'aliquot_tag': 'ALQ_939f2f73', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00517.RNA-Seq.R2_L003.T C3N-00517 PDA RNA-Seq tumor CPT0093860006 171109_UNC31-K00269_0090_AHLHNWBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4428184357 FASTQ R2_L003 unaligned CPTAC3 70c40a42-439e-4c57-ad66-313287a12471 c3da0569aea560d54fdd166b31886755 { 'aliquot_tag': 'ALQ_bc108c83', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00517.RNA-Seq.R2_L008.A C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ATTCCT_S3_L008_R2_001.fastq.gz 5537737885 FASTQ R2_L008 unaligned CPTAC3 20b19fef-3565-4f4e-974c-cfff35111960 1bfd535642ccac9f9d981f0a27cd30bf { 'aliquot_tag': 'ALQ_939f2f73', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00517.RNA-Seq.transcriptome.A.hg38 C3N-00517 PDA RNA-Seq tissue_normal CPT0093880009 04dfe748-fcaf-498d-b4af-2ee2fcac28e0.rna_seq.transcriptome.gdc_realn.bam 14865549083 BAM transcriptome harmonized CPTAC3 43307932-396e-4c51-bbf7-768735c68344 c94eecec6f25ffd84c0eaebcf7078de5 { 'aliquot_tag': 'ALQ_939f2f73', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00517.RNA-Seq.transcriptome.T.hg38 C3N-00517 PDA RNA-Seq tumor CPT0093860006 b8a5ea19-6c72-47ed-9ebf-9774bc1196dc.rna_seq.transcriptome.gdc_realn.bam 11994160186 BAM transcriptome harmonized CPTAC3 e91fef83-7b46-48c5-8c1c-9d2e8f8d19bf 5ed8fcc5ae5135516fe5074d5c2b84ee { 'aliquot_tag': 'ALQ_bc108c83', 'gdc_sample_type': 'Primary Tumor' } C3N-00517.WGS.A C3N-00517 PDA WGS tissue_normal CPT0093880006 CPT0093880006.WholeGenome.RP-1303.bam 53603876211 BAM aligned CPTAC3 411cda6b-3462-4f81-939b-663c0fdae568 6a1564e98a8cf385e65eaca9b5052374 { 'aliquot_tag': 'ALQ_32032e2', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21299,12 +23067,12 @@ C3N-00518.miRNA-Seq.T C3N-00518 PDA miRNA-Seq tumor CPT0078000009 181012_UNC32-K C3N-00518.miRNA-Seq.T.hg38 C3N-00518 PDA miRNA-Seq tumor CPT0078000009 e3075695-c9a6-45e8-a6dc-29e3b859e058_mirnaseq_gdc_realn.bam 259725187 BAM harmonized CPTAC3 e9c8747a-ea36-4cf6-a8a3-c1aa75cf4b40 878cedfdbf3db9509231f3dbd4e90a1f { 'aliquot_tag': 'ALQ_5831a017', 'gdc_sample_type': 'Primary Tumor' } C3N-00518.RNA-Seq.chimeric.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 8d29479c-a76f-4b83-9af4-2f501637165f.rna_seq.chimeric.gdc_realn.bam 114627217 BAM chimeric harmonized CPTAC3 7424fc1b-1274-4142-a8b3-0d15f271344b 016caca6be8a787439cbe53cf7363bad { 'aliquot_tag': 'ALQ_1f91dac7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00518.RNA-Seq.chimeric.T.hg38 C3N-00518 PDA RNA-Seq tumor CPT0078000009 d097bf34-fa01-4b9c-8b71-e47effe7724e.rna_seq.chimeric.gdc_realn.bam 78743077 BAM chimeric harmonized CPTAC3 248f5d5d-fe8e-4c51-98cf-9697a13a6a91 d3a07c0e2469858441ca074d25df2bbc { 'aliquot_tag': 'ALQ_5831a017', 'gdc_sample_type': 'Primary Tumor' } -C3N-00518.RNA-Seq.genomic.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 8d29479c-a76f-4b83-9af4-2f501637165f.rna_seq.genomic.gdc_realn.bam 8444367367 BAM genomic harmonized CPTAC3 d718388b-e71f-4faa-a7b2-b303f45fba27 fa37595c5a1b99969b40ee0be7af7af6 { 'aliquot_tag': 'ALQ_1f91dac7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00518.RNA-Seq.genomic.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 8d29479c-a76f-4b83-9af4-2f501637165f.rna_seq.genomic.gdc_realn.bam 8444367367 BAM genomic harmonized CPTAC3 306e0789-ae4b-47f5-a374-94d6a18ee079 fa37595c5a1b99969b40ee0be7af7af6 { 'aliquot_tag': 'ALQ_1f91dac7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00518.RNA-Seq.genomic.T.hg38 C3N-00518 PDA RNA-Seq tumor CPT0078000009 d097bf34-fa01-4b9c-8b71-e47effe7724e.rna_seq.genomic.gdc_realn.bam 7289192414 BAM genomic harmonized CPTAC3 ff11beaa-559d-493f-bc91-fdf25384a587 fa9481beafd0c3d31af3fe415efe407b { 'aliquot_tag': 'ALQ_5831a017', 'gdc_sample_type': 'Primary Tumor' } -C3N-00518.RNA-Seq.R1_L006.A C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3620007047 FASTQ R1_L006 unaligned CPTAC3 2ea84b99-adc8-4c50-b4da-227d0bece1b8 4aa15ae81c1bef8d1d57c5268773e7c3 { 'aliquot_tag': 'ALQ_1f91dac7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00518.RNA-Seq.R1_L008.T C3N-00518 PDA RNA-Seq tumor CPT0078000009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3602260099 FASTQ R1_L008 unaligned CPTAC3 c69be997-c3ee-4a41-9b70-99adb1544886 c686751bb9111b511b655cdd8f38495d { 'aliquot_tag': 'ALQ_5831a017', 'gdc_sample_type': 'Primary Tumor' } -C3N-00518.RNA-Seq.R2_L006.A C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTCAA_S21_L006_R2_001.fastq.gz 4114925667 FASTQ R2_L006 unaligned CPTAC3 323b48ec-2dc0-4123-9d9e-e23ea4446bd6 2eaeef1f15592bdae09104263093f507 { 'aliquot_tag': 'ALQ_1f91dac7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00518.RNA-Seq.R2_L008.T C3N-00518 PDA RNA-Seq tumor CPT0078000009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4027405041 FASTQ R2_L008 unaligned CPTAC3 499b9448-5a84-4417-a529-3683630e8bb8 7fac2352a483691a50fadae4d1560e47 { 'aliquot_tag': 'ALQ_5831a017', 'gdc_sample_type': 'Primary Tumor' } +C3N-00518.RNA-Seq.R1_L006.A C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3620007047 FASTQ R1_L006 unaligned CPTAC3 2ea84b99-adc8-4c50-b4da-227d0bece1b8 4aa15ae81c1bef8d1d57c5268773e7c3 { 'aliquot_tag': 'ALQ_1f91dac7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00518.RNA-Seq.R1_L008.T C3N-00518 PDA RNA-Seq tumor CPT0078000009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L008_R1_001.fastq.gz 3602260099 FASTQ R1_L008 unaligned CPTAC3 c69be997-c3ee-4a41-9b70-99adb1544886 c686751bb9111b511b655cdd8f38495d { 'aliquot_tag': 'ALQ_5831a017', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00518.RNA-Seq.R2_L006.A C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 180516_UNC31-K00269_0129_AHTWLFBBXX_AGTCAA_S21_L006_R2_001.fastq.gz 4114925667 FASTQ R2_L006 unaligned CPTAC3 323b48ec-2dc0-4123-9d9e-e23ea4446bd6 2eaeef1f15592bdae09104263093f507 { 'aliquot_tag': 'ALQ_1f91dac7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-00518.RNA-Seq.R2_L008.T C3N-00518 PDA RNA-Seq tumor CPT0078000009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATTCCT_S7_L008_R2_001.fastq.gz 4027405041 FASTQ R2_L008 unaligned CPTAC3 499b9448-5a84-4417-a529-3683630e8bb8 7fac2352a483691a50fadae4d1560e47 { 'aliquot_tag': 'ALQ_5831a017', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00518.RNA-Seq.transcriptome.A.hg38 C3N-00518 PDA RNA-Seq tissue_normal CPT0078030009 8d29479c-a76f-4b83-9af4-2f501637165f.rna_seq.transcriptome.gdc_realn.bam 10037405038 BAM transcriptome harmonized CPTAC3 22177eae-11d1-458a-a327-83429e3b94bb 477dd032900c671984a5f4996a52da74 { 'aliquot_tag': 'ALQ_1f91dac7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00518.RNA-Seq.transcriptome.T.hg38 C3N-00518 PDA RNA-Seq tumor CPT0078000009 d097bf34-fa01-4b9c-8b71-e47effe7724e.rna_seq.transcriptome.gdc_realn.bam 10687676518 BAM transcriptome harmonized CPTAC3 92d1ec2b-e6d1-4f6f-a0ee-60887282b28d 5e9762f62a62e5eacabc3a0658c2d136 { 'aliquot_tag': 'ALQ_5831a017', 'gdc_sample_type': 'Primary Tumor' } C3N-00518.WGS.A C3N-00518 PDA WGS tissue_normal CPT0078030006 CPT0078030006.WholeGenome.RP-1303.bam 60453231033 BAM aligned CPTAC3 60e1c344-88ba-4f77-a252-51c23f7591f0 d020537b6308dfac9f167791195cb4bc { 'aliquot_tag': 'ALQ_8f2ec756', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21331,12 +23099,12 @@ C3N-00519.miRNA-Seq.T C3N-00519 HNSCC miRNA-Seq tumor CPT0013430006 180924_UNC31 C3N-00519.miRNA-Seq.T.hg38 C3N-00519 HNSCC miRNA-Seq tumor CPT0013430006 26621047-64ee-42cc-bcb4-3c1a24d6a18a_mirnaseq_gdc_realn.bam 247600753 BAM harmonized CPTAC3 30950800-0e23-419c-99eb-33b856bce5ac 61ef48f4376edb5aa2462ce20b63b8b1 { 'aliquot_tag': 'ALQ_d0d7d83d', 'gdc_sample_type': 'Primary Tumor' } C3N-00519.RNA-Seq.chimeric.A.hg38 C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 cf5ac1b1-c106-42cb-8fc9-e4c8e7f78f8b.rna_seq.chimeric.gdc_realn.bam 51557812 BAM chimeric harmonized CPTAC3 5607e145-e915-42bb-8ffc-f7f0c0eb2819 d8625bbb24518b78398104f868bc068a { 'aliquot_tag': 'ALQ_1837574d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00519.RNA-Seq.chimeric.T.hg38 C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 08c53b8b-8ed6-47cb-9ccb-2982f852c895.rna_seq.chimeric.gdc_realn.bam 68323515 BAM chimeric harmonized CPTAC3 b0385c30-095a-4f6c-9829-4e4dedde0eb1 0f907b3c5666cdaa4a595a324748bf84 { 'aliquot_tag': 'ALQ_d0d7d83d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00519.RNA-Seq.genomic.A.hg38 C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 cf5ac1b1-c106-42cb-8fc9-e4c8e7f78f8b.rna_seq.genomic.gdc_realn.bam 9200978632 BAM genomic harmonized CPTAC3 cc3419ff-1c1c-4a57-980f-11ff839ab449 977a1e2609099f17ada1ed8e6d8b86dc { 'aliquot_tag': 'ALQ_1837574d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00519.RNA-Seq.genomic.T.hg38 C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 08c53b8b-8ed6-47cb-9ccb-2982f852c895.rna_seq.genomic.gdc_realn.bam 8624499176 BAM genomic harmonized CPTAC3 b1cff1ff-f498-4779-8936-96669c2f2af0 5ea1e24dfedc5f8f77b6a16bf1a578ae { 'aliquot_tag': 'ALQ_d0d7d83d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00519.RNA-Seq.R1_L006.A C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 180516_UNC32-K00270_0095_AHTY5LBBXX_CAGATC_S21_L006_R1_001.fastq.gz 3914610227 FASTQ R1_L006 unaligned CPTAC3 e23083b2-997d-4130-bf75-ec1d9b40c2a8 bafe9572ce8d844ccf4c61deb3527388 { 'aliquot_tag': 'ALQ_1837574d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00519.RNA-Seq.R1_L006.T C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L006_R1_001.fastq.gz 3643464970 FASTQ R1_L006 unaligned CPTAC3 91119f86-7715-448f-a216-86049f310e09 a3c39cf2f33a20e88c884b57bc4f04ba { 'aliquot_tag': 'ALQ_d0d7d83d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00519.RNA-Seq.R2_L006.A C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 180516_UNC32-K00270_0095_AHTY5LBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4340903009 FASTQ R2_L006 unaligned CPTAC3 5753e09e-61b7-4b19-be07-0f61808de354 caea4f68a7e70d0f82328eea22eb199d { 'aliquot_tag': 'ALQ_1837574d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00519.RNA-Seq.R2_L006.T C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L006_R2_001.fastq.gz 3963654056 FASTQ R2_L006 unaligned CPTAC3 2ba9a60e-eaaf-4990-a898-93a2e89a26e0 497a5f75d83728bc1262d2c2af5daf5b { 'aliquot_tag': 'ALQ_d0d7d83d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00519.RNA-Seq.genomic.A.hg38 C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 cf5ac1b1-c106-42cb-8fc9-e4c8e7f78f8b.rna_seq.genomic.gdc_realn.bam 9200978632 BAM genomic harmonized CPTAC3 49e3438b-fdc5-4a56-9860-c12181f3c8c9 977a1e2609099f17ada1ed8e6d8b86dc { 'aliquot_tag': 'ALQ_1837574d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00519.RNA-Seq.genomic.T.hg38 C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 08c53b8b-8ed6-47cb-9ccb-2982f852c895.rna_seq.genomic.gdc_realn.bam 8624499176 BAM genomic harmonized CPTAC3 5add4e3d-51f1-4b8d-ab87-fb7ca415b0eb 5ea1e24dfedc5f8f77b6a16bf1a578ae { 'aliquot_tag': 'ALQ_d0d7d83d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00519.RNA-Seq.R1_L006.A C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 180516_UNC32-K00270_0095_AHTY5LBBXX_CAGATC_S21_L006_R1_001.fastq.gz 3914610227 FASTQ R1_L006 unaligned CPTAC3 e23083b2-997d-4130-bf75-ec1d9b40c2a8 bafe9572ce8d844ccf4c61deb3527388 { 'aliquot_tag': 'ALQ_1837574d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00519.RNA-Seq.R1_L006.T C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L006_R1_001.fastq.gz 3643464970 FASTQ R1_L006 unaligned CPTAC3 91119f86-7715-448f-a216-86049f310e09 a3c39cf2f33a20e88c884b57bc4f04ba { 'aliquot_tag': 'ALQ_d0d7d83d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00519.RNA-Seq.R2_L006.A C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 180516_UNC32-K00270_0095_AHTY5LBBXX_CAGATC_S21_L006_R2_001.fastq.gz 4340903009 FASTQ R2_L006 unaligned CPTAC3 5753e09e-61b7-4b19-be07-0f61808de354 caea4f68a7e70d0f82328eea22eb199d { 'aliquot_tag': 'ALQ_1837574d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-00519.RNA-Seq.R2_L006.T C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L006_R2_001.fastq.gz 3963654056 FASTQ R2_L006 unaligned CPTAC3 2ba9a60e-eaaf-4990-a898-93a2e89a26e0 497a5f75d83728bc1262d2c2af5daf5b { 'aliquot_tag': 'ALQ_d0d7d83d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-00519.RNA-Seq.transcriptome.A.hg38 C3N-00519 HNSCC RNA-Seq tissue_normal CPT0013460006 cf5ac1b1-c106-42cb-8fc9-e4c8e7f78f8b.rna_seq.transcriptome.gdc_realn.bam 11637410107 BAM transcriptome harmonized CPTAC3 2b22bcbe-9b7a-4f5d-b285-e24b227ccbd0 3b0b0ad425727de59626533a5e0f6c33 { 'aliquot_tag': 'ALQ_1837574d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00519.RNA-Seq.transcriptome.T.hg38 C3N-00519 HNSCC RNA-Seq tumor CPT0013430006 08c53b8b-8ed6-47cb-9ccb-2982f852c895.rna_seq.transcriptome.gdc_realn.bam 10327832799 BAM transcriptome harmonized CPTAC3 f2c11415-494c-4ee2-bcf2-978314639de9 43c19f928dead569cf8595bba0294824 { 'aliquot_tag': 'ALQ_d0d7d83d', 'gdc_sample_type': 'Primary Tumor' } C3N-00519.WGS.A C3N-00519 HNSCC WGS tissue_normal CPT0013460009 CPT0013460009.WholeGenome.RP-1303.bam 68551414250 BAM aligned CPTAC3 a2f43ae3-3c0e-4168-91ec-b32a98f3ed40 0e6f113ce81a4fe0bd86bf4ceb68f8f9 { 'aliquot_tag': 'ALQ_88884adc', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21357,18 +23125,21 @@ C3N-00520.miRNA-Seq.A C3N-00520 UCEC miRNA-Seq tissue_normal CPT0115040009 19013 C3N-00520.miRNA-Seq.A.hg38 C3N-00520 UCEC miRNA-Seq tissue_normal CPT0115040009 8254907f-96f2-46dd-82b5-8e601d60dbb0_mirnaseq_gdc_realn.bam 237641113 BAM harmonized CPTAC3 0c1ae3a2-e3c0-4a96-98c5-18031599638e ecd083521bcb13916ca89a22cb33640e { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00520.miRNA-Seq.T C3N-00520 UCEC miRNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0176_AHYGLVBBXX_GACGAC_S41_L003_R1_001.unaln.bam 225524250 BAM unaligned CPTAC3 bfa8f9d4-6562-4af1-9681-0abfee3adbcc d0dda17010b66cad980dc0282d723da1 { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor' } C3N-00520.miRNA-Seq.T.hg38 C3N-00520 UCEC miRNA-Seq tumor CPT0115000010 a9c2d09a-55b7-462d-823d-ecc961c9b21f_mirnaseq_gdc_realn.bam 246197719 BAM harmonized CPTAC3 e1c992dd-cd83-4253-97f9-0b536c9bf5a7 b551f730d22310469b51e8911e815db4 { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00520.RNA-Seq.chimeric.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 c99c3d06-6272-4310-b413-30e9861dfc9b.rna_seq.chimeric.gdc_realn.bam 43606523 BAM chimeric harmonized CPTAC3 9c63ec6f-e362-451c-b18b-d6727e6f1136 2fac63e510505ab55ce10ac9034c0149 { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00520.RNA-Seq.chimeric.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 8b7a2732-d578-467e-ae69-cbcc6e1b2733.rna_seq.chimeric.gdc_realn.bam 32130275 BAM chimeric harmonized CPTAC3 84554206-69df-4316-a103-963281874a16 cde579531167bbe99e774a480c199613 { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00520.RNA-Seq.genomic.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 c99c3d06-6272-4310-b413-30e9861dfc9b.rna_seq.genomic.gdc_realn.bam 10127574844 BAM genomic harmonized CPTAC3 d9067461-01ad-475b-a7f2-321f6eb133ba 4ea42a80e19e6a160593f6463b2b285e { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00520.RNA-Seq.genomic.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 8b7a2732-d578-467e-ae69-cbcc6e1b2733.rna_seq.genomic.gdc_realn.bam 9513454222 BAM genomic harmonized CPTAC3 516851f6-b975-4cc5-9bbe-2a16783897f1 725bb3991aa8efadf56face99613753d { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00520.RNA-Seq.R1_L006.A C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L006_R1_001.fastq.gz 4335911078 FASTQ R1_L006 unaligned CPTAC3 b44c72d4-31f1-45ed-94f8-79ab011238ec 7bdf34282f9e8ce755d5688f2b5cf00f { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00520.RNA-Seq.R1_L008.T C3N-00520 UCEC RNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L008_R1_001.fastq.gz 3941067625 FASTQ R1_L008 unaligned CPTAC3 37f04704-d9e0-4728-9466-38d72703f0bb 77387cb74a65e5931c7faea45a028c8a { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00520.RNA-Seq.R1_.T C3N-00520 UCEC RNA-Seq tumor CPT0350430001 20210729_P3_H12_WB7988-Plate3_S96_R1_001.fastq.gz 7325829920 FASTQ R1_ unaligned CPTAC3 3d566221-5aa7-4ad5-ae97-42115975a08e 39fd46cd6371472208d03718fc28da96 { 'aliquot_tag': 'ALQ_c29c653c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00520.RNA-Seq.R2_L006.A C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L006_R2_001.fastq.gz 4882238317 FASTQ R2_L006 unaligned CPTAC3 c363744e-8286-4bfb-a810-158ac546af31 db4d48a2ed1db010d8d45f783c77a699 { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00520.RNA-Seq.R2_L008.T C3N-00520 UCEC RNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L008_R2_001.fastq.gz 4134888240 FASTQ R2_L008 unaligned CPTAC3 64f7d7f3-03a1-4159-88c6-9443080e391f 98d56108650b71f88cd0d2e9ac1c9cb2 { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00520.RNA-Seq.R2_.T C3N-00520 UCEC RNA-Seq tumor CPT0350430001 20210729_P3_H12_WB7988-Plate3_S96_R2_001.fastq.gz 7575110561 FASTQ R2_ unaligned CPTAC3 6b9bcc54-d829-41ad-97ef-4f5545c0f7f2 5aa21c829fe4c811bf1d579a7c2ffb7e { 'aliquot_tag': 'ALQ_c29c653c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00520.RNA-Seq.transcriptome.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 c99c3d06-6272-4310-b413-30e9861dfc9b.rna_seq.transcriptome.gdc_realn.bam 9400912204 BAM transcriptome harmonized CPTAC3 789031f4-03be-4bf9-ba89-eea2781de588 ab4a54d04cdfd6e65c7b82cfa8453b58 { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00520.RNA-Seq.transcriptome.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 8b7a2732-d578-467e-ae69-cbcc6e1b2733.rna_seq.transcriptome.gdc_realn.bam 7887219440 BAM transcriptome harmonized CPTAC3 50ecd97e-773c-42e1-a91f-ee3fd5dca112 2d13a60baa278dda9f4dd9a3c609687b { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00520.RNA-Seq.chimeric.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 fee1a7eb-ccf3-45f0-89d3-cbc108cf9be2.rna_seq.chimeric.gdc_realn.bam 43600116 BAM chimeric harmonized CPTAC3 5c847937-89f3-4d3a-bf01-af2762f125a8 f4f82ebc67d462649e711f09682b6a18 { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00520.RNA-Seq.chimeric.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 0500d934-9e81-45bb-90ee-11d40b5113cf.rna_seq.chimeric.gdc_realn.bam 32119133 BAM chimeric harmonized CPTAC3 1920f28c-06d3-4293-b1b6-e5cae999f9c0 53a9bf3b1efdf901f902a66cbdd1ef3c { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00520.RNA-Seq.chimeric.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0350430001 3d19af56-ce82-4ae3-be87-87e1b3afca53.rna_seq.chimeric.gdc_realn.bam 181838447 BAM chimeric harmonized CPTAC3 5734a3db-be94-45be-8545-6a2503fab522 0147f3be5b22a42fbd497185ca9876c0 { 'aliquot_tag': 'ALQ_c29c653c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00520.RNA-Seq.genomic.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 fee1a7eb-ccf3-45f0-89d3-cbc108cf9be2.rna_seq.genomic.gdc_realn.bam 10128541442 BAM genomic harmonized CPTAC3 e86bbc57-2ded-48fb-b195-d9017ccd9bfe d22c3299f41be8d0e86a458bb1576fc4 { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00520.RNA-Seq.genomic.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 0500d934-9e81-45bb-90ee-11d40b5113cf.rna_seq.genomic.gdc_realn.bam 9513087321 BAM genomic harmonized CPTAC3 c250644d-5e2c-40fc-8510-1a9f6557d836 6c9aa06a593265816c8d8c8c6b6f78ba { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00520.RNA-Seq.genomic.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0350430001 3d19af56-ce82-4ae3-be87-87e1b3afca53.rna_seq.genomic.gdc_realn.bam 10003348786 BAM genomic harmonized CPTAC3 83b5a606-6e22-4757-a728-a6b4451fb1bb 7cfef2d6483593b63df8711239f61d05 { 'aliquot_tag': 'ALQ_c29c653c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00520.RNA-Seq.R1_L006.A C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L006_R1_001.fastq.gz 4335911078 FASTQ R1_L006 unaligned CPTAC3 b44c72d4-31f1-45ed-94f8-79ab011238ec 7bdf34282f9e8ce755d5688f2b5cf00f { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00520.RNA-Seq.R1_L008.T C3N-00520 UCEC RNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L008_R1_001.fastq.gz 3941067625 FASTQ R1_L008 unaligned CPTAC3 37f04704-d9e0-4728-9466-38d72703f0bb 77387cb74a65e5931c7faea45a028c8a { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00520.RNA-Seq.R2_L006.A C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L006_R2_001.fastq.gz 4882238317 FASTQ R2_L006 unaligned CPTAC3 c363744e-8286-4bfb-a810-158ac546af31 db4d48a2ed1db010d8d45f783c77a699 { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-00520.RNA-Seq.R2_L008.T C3N-00520 UCEC RNA-Seq tumor CPT0115000010 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L008_R2_001.fastq.gz 4134888240 FASTQ R2_L008 unaligned CPTAC3 64f7d7f3-03a1-4159-88c6-9443080e391f 98d56108650b71f88cd0d2e9ac1c9cb2 { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00520.RNA-Seq.T C3N-00520 UCEC RNA-Seq tumor CPT0350430001 20210729_P3_H12_WB7988-Plate3_S96_R1_001.fastq.gz 7325829920 FASTQ unaligned CPTAC3 3d566221-5aa7-4ad5-ae97-42115975a08e 39fd46cd6371472208d03718fc28da96 +C3N-00520.RNA-Seq.T C3N-00520 UCEC RNA-Seq tumor CPT0350430001 20210729_P3_H12_WB7988-Plate3_S96_R2_001.fastq.gz 7575110561 FASTQ unaligned CPTAC3 6b9bcc54-d829-41ad-97ef-4f5545c0f7f2 5aa21c829fe4c811bf1d579a7c2ffb7e +C3N-00520.RNA-Seq.transcriptome.A.hg38 C3N-00520 UCEC RNA-Seq tissue_normal CPT0115040009 fee1a7eb-ccf3-45f0-89d3-cbc108cf9be2.rna_seq.transcriptome.gdc_realn.bam 10759913534 BAM transcriptome harmonized CPTAC3 7ddf76b7-6141-4a36-b8d5-1d1b872c6f06 6f7848eac67b7698c8b184a54ec09605 { 'aliquot_tag': 'ALQ_1d727ad3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00520.RNA-Seq.transcriptome.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0115000010 0500d934-9e81-45bb-90ee-11d40b5113cf.rna_seq.transcriptome.gdc_realn.bam 8958026332 BAM transcriptome harmonized CPTAC3 d05af09a-1bc8-4ccb-9a07-97c87377f7f3 0c3ea638ed90fc4983ccbdf1345ba063 { 'aliquot_tag': 'ALQ_883555f6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00520.RNA-Seq.transcriptome.T.hg38 C3N-00520 UCEC RNA-Seq tumor CPT0350430001 3d19af56-ce82-4ae3-be87-87e1b3afca53.rna_seq.transcriptome.gdc_realn.bam 5891228158 BAM transcriptome harmonized CPTAC3 6b68649d-2a0c-460d-b00f-618fc343432a 11ce11ba3a64bf4b9e22f8ff56ca336d { 'aliquot_tag': 'ALQ_c29c653c', 'gdc_sample_type': 'Primary Tumor' } C3N-00520.WGS.N C3N-00520 UCEC WGS blood_normal CPT0116000002 CPT0116000002.WholeGenome.RP-1303.bam 59370999097 BAM aligned CPTAC3 d92ac087-781b-4ac4-a557-1f23be743851 1ae0c7ff592f2145c589b133fe5ee89c { 'aliquot_tag': 'ALQ_4ec81f06', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00520.WGS.N.hg38 C3N-00520 UCEC WGS blood_normal CPT0116000002 cafab02f-1ebc-45de-90d8-abbea5891cb4_wgs_gdc_realn.bam 87069186616 BAM harmonized CPTAC3 b29b2b55-a510-484a-b34c-9747309d8351 81721c59563a157edc722461ccd0ae4a { 'aliquot_tag': 'ALQ_4ec81f06', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00520.WGS.T C3N-00520 UCEC WGS tumor CPT0115000007 CPT0115000007.WholeGenome.RP-1303.bam 60322398741 BAM aligned CPTAC3 6bc9e6f2-0b26-439b-aa45-a2122244a79d 0737365dcbda6498d2d77877162c95f9 { 'aliquot_tag': 'ALQ_f4af114', 'gdc_sample_type': 'Primary Tumor' } @@ -21395,17 +23166,17 @@ C3N-00545.REP_decba3ac.miRNA-Seq.T C3N-00545 LUAD miRNA-Seq tumor CPT0066910009 C3N-00545.REP_decba3ac.miRNA-Seq.T.hg38 C3N-00545 LUAD miRNA-Seq tumor CPT0066910009 c5457d01-f4f0-446a-a62d-a2e5703f3d92_mirnaseq_gdc_realn.bam 245915407 BAM harmonized CPTAC3 e30b037c-51be-4be5-977c-960f65b3c731 f90d1af845af876f26c81cb2bfa2d768 { 'aliquot_tag': 'REP_decba3ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-00545.REP_decba3ac.RNA-Seq.chimeric.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066910009 84e5be7a-ba48-4c9e-9832-d93530662cc6.rna_seq.chimeric.gdc_realn.bam 27556640 BAM chimeric harmonized CPTAC3 a675301c-f067-4342-a1ba-cfa93c9abf6e a76b295b4a795894457990c07d9cec86 { 'aliquot_tag': 'REP_decba3ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-00545.REP_decba3ac.RNA-Seq.genomic.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066910009 84e5be7a-ba48-4c9e-9832-d93530662cc6.rna_seq.genomic.gdc_realn.bam 7224136868 BAM genomic harmonized CPTAC3 b5c06561-24f7-46ac-a3bf-f4b376b6ac2e c900f242123d94fcc1364068f6f6e0dd { 'aliquot_tag': 'REP_decba3ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-00545.REP_decba3ac.RNA-Seq.R1_L007.T C3N-00545 LUAD RNA-Seq tumor CPT0066910009 180606_UNC32-K00270_0097_AHVCKFBBXX_GATCAG_S24_L007_R1_001.fastq.gz 3228816890 FASTQ R1_L007 unaligned CPTAC3 5c4d34ea-977b-4477-84c4-c72a1d817f6a a011f254f1554ce8c8912d163760c3ce { 'aliquot_tag': 'REP_decba3ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-00545.REP_decba3ac.RNA-Seq.R2_L007.T C3N-00545 LUAD RNA-Seq tumor CPT0066910009 180606_UNC32-K00270_0097_AHVCKFBBXX_GATCAG_S24_L007_R2_001.fastq.gz 3442853503 FASTQ R2_L007 unaligned CPTAC3 a3c1384f-8fc8-4a06-a292-673a478da5e7 4b370165806afe30a15e0a5d156879de { 'aliquot_tag': 'REP_decba3ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3N-00545.REP_decba3ac.RNA-Seq.R1_L007.T C3N-00545 LUAD RNA-Seq tumor CPT0066910009 180606_UNC32-K00270_0097_AHVCKFBBXX_GATCAG_S24_L007_R1_001.fastq.gz 3228816890 FASTQ R1_L007 unaligned CPTAC3 5c4d34ea-977b-4477-84c4-c72a1d817f6a a011f254f1554ce8c8912d163760c3ce { 'aliquot_tag': 'REP_decba3ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R1', 'lane': 'L007' } +C3N-00545.REP_decba3ac.RNA-Seq.R2_L007.T C3N-00545 LUAD RNA-Seq tumor CPT0066910009 180606_UNC32-K00270_0097_AHVCKFBBXX_GATCAG_S24_L007_R2_001.fastq.gz 3442853503 FASTQ R2_L007 unaligned CPTAC3 a3c1384f-8fc8-4a06-a292-673a478da5e7 4b370165806afe30a15e0a5d156879de { 'aliquot_tag': 'REP_decba3ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R2', 'lane': 'L007' } C3N-00545.REP_decba3ac.RNA-Seq.transcriptome.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066910009 84e5be7a-ba48-4c9e-9832-d93530662cc6.rna_seq.transcriptome.gdc_realn.bam 9365875572 BAM transcriptome harmonized CPTAC3 76db6b1c-0071-45fe-bf17-f7a435d4b8fa 5e6a6f9ac89728d8c0b1b20ba4c56e0a { 'aliquot_tag': 'REP_decba3ac', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-00545.RNA-Seq.chimeric.A.hg38 C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 db9ea6d1-dff0-41ca-80cf-b890e67242bd.rna_seq.chimeric.gdc_realn.bam 73159545 BAM chimeric harmonized CPTAC3 c12ac8cd-dee0-4038-a0ec-976af154b012 a6ddb66c3d37970a3c264514f77eb404 { 'aliquot_tag': 'ALQ_adbdbce7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00545.RNA-Seq.chimeric.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066890009 2553a2f4-4e4d-4c12-90d6-1a3cc5f05d2a.rna_seq.chimeric.gdc_realn.bam 27223919 BAM chimeric harmonized CPTAC3 62283599-ec19-46e6-b259-52a38fd516fe 8d60920b4b7a5a5f7a1628a61a1bee2c { 'aliquot_tag': 'ALQ_25e73bc8', 'gdc_sample_type': 'Primary Tumor' } -C3N-00545.RNA-Seq.genomic.A.hg38 C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 db9ea6d1-dff0-41ca-80cf-b890e67242bd.rna_seq.genomic.gdc_realn.bam 7241924520 BAM genomic harmonized CPTAC3 33070af6-ba41-4e3c-a946-69077e234f34 7548605f955fd0d303c3b81bff2d8aae { 'aliquot_tag': 'ALQ_adbdbce7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00545.RNA-Seq.genomic.A.hg38 C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 db9ea6d1-dff0-41ca-80cf-b890e67242bd.rna_seq.genomic.gdc_realn.bam 7241924520 BAM genomic harmonized CPTAC3 1e60692f-746f-4ea4-8885-6323946dca0b 7548605f955fd0d303c3b81bff2d8aae { 'aliquot_tag': 'ALQ_adbdbce7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00545.RNA-Seq.genomic.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066890009 2553a2f4-4e4d-4c12-90d6-1a3cc5f05d2a.rna_seq.genomic.gdc_realn.bam 8838318095 BAM genomic harmonized CPTAC3 5cb4b155-7fa9-4af1-930d-1f5c3dc1b494 744bd390bb03baed4e526abf04120292 { 'aliquot_tag': 'ALQ_25e73bc8', 'gdc_sample_type': 'Primary Tumor' } -C3N-00545.RNA-Seq.R1_L001.A C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L001_R1_001.fastq.gz 3481257854 FASTQ R1_L001 unaligned CPTAC3 f8551601-ae62-4c3a-a6f9-54a5b61a7029 ba8c3c736a921eb009e60b63fb83f9a6 { 'aliquot_tag': 'ALQ_adbdbce7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00545.RNA-Seq.R1_L002.T C3N-00545 LUAD RNA-Seq tumor CPT0066890009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L002_R1_001.fastq.gz 3750262051 FASTQ R1_L002 unaligned CPTAC3 fd3861f3-4713-4c88-a4e4-2f67e02fe102 03182b661ba569883f666b0b13cf9483 { 'aliquot_tag': 'ALQ_25e73bc8', 'gdc_sample_type': 'Primary Tumor' } -C3N-00545.RNA-Seq.R2_L001.A C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L001_R2_001.fastq.gz 4032403866 FASTQ R2_L001 unaligned CPTAC3 77e85028-53b6-4157-95e0-90d9c9635e21 f79b55652e334c409c16a1eaab1c8e28 { 'aliquot_tag': 'ALQ_adbdbce7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00545.RNA-Seq.R2_L002.T C3N-00545 LUAD RNA-Seq tumor CPT0066890009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L002_R2_001.fastq.gz 4129280376 FASTQ R2_L002 unaligned CPTAC3 a33cde2f-484a-49df-9cb3-2c0dd9d0f73c d2fce6f71c5026f9edd36fb78f602f48 { 'aliquot_tag': 'ALQ_25e73bc8', 'gdc_sample_type': 'Primary Tumor' } +C3N-00545.RNA-Seq.R1_L001.A C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L001_R1_001.fastq.gz 3481257854 FASTQ R1_L001 unaligned CPTAC3 f8551601-ae62-4c3a-a6f9-54a5b61a7029 ba8c3c736a921eb009e60b63fb83f9a6 { 'aliquot_tag': 'ALQ_adbdbce7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-00545.RNA-Seq.R1_L002.T C3N-00545 LUAD RNA-Seq tumor CPT0066890009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L002_R1_001.fastq.gz 3750262051 FASTQ R1_L002 unaligned CPTAC3 fd3861f3-4713-4c88-a4e4-2f67e02fe102 03182b661ba569883f666b0b13cf9483 { 'aliquot_tag': 'ALQ_25e73bc8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00545.RNA-Seq.R2_L001.A C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 171215_UNC32-K00270_0072_AHN3THBBXX_GGCTAC_S4_L001_R2_001.fastq.gz 4032403866 FASTQ R2_L001 unaligned CPTAC3 77e85028-53b6-4157-95e0-90d9c9635e21 f79b55652e334c409c16a1eaab1c8e28 { 'aliquot_tag': 'ALQ_adbdbce7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-00545.RNA-Seq.R2_L002.T C3N-00545 LUAD RNA-Seq tumor CPT0066890009 170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L002_R2_001.fastq.gz 4129280376 FASTQ R2_L002 unaligned CPTAC3 a33cde2f-484a-49df-9cb3-2c0dd9d0f73c d2fce6f71c5026f9edd36fb78f602f48 { 'aliquot_tag': 'ALQ_25e73bc8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-00545.RNA-Seq.transcriptome.A.hg38 C3N-00545 LUAD RNA-Seq tissue_normal CPT0066930005 db9ea6d1-dff0-41ca-80cf-b890e67242bd.rna_seq.transcriptome.gdc_realn.bam 9155420440 BAM transcriptome harmonized CPTAC3 f4a8e20e-8d0e-4b84-ba25-471563258e6d 4f43acf6e57f6810dbaa692d0cbd67c5 { 'aliquot_tag': 'ALQ_adbdbce7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00545.RNA-Seq.transcriptome.T.hg38 C3N-00545 LUAD RNA-Seq tumor CPT0066890009 2553a2f4-4e4d-4c12-90d6-1a3cc5f05d2a.rna_seq.transcriptome.gdc_realn.bam 8982139098 BAM transcriptome harmonized CPTAC3 7942613a-c7ef-448e-a62c-994bcf263ea6 e6984d159a5dc4ad79e1e69361e2db12 { 'aliquot_tag': 'ALQ_25e73bc8', 'gdc_sample_type': 'Primary Tumor' } C3N-00545.WGS.A C3N-00545 LUAD WGS tissue_normal CPT0066930008 CPT0066930008.WholeGenome.RP-1303.bam 54914703437 BAM aligned CPTAC3 8a494e7c-b8ee-4066-9feb-60844052a151 2341f57c1ebbbe10ba67217518a3cf66 { 'aliquot_tag': 'ALQ_d30cc05a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21430,12 +23201,12 @@ C3N-00546.miRNA-Seq.T C3N-00546 LUAD miRNA-Seq tumor CPT0067070013 181012_UNC32- C3N-00546.miRNA-Seq.T.hg38 C3N-00546 LUAD miRNA-Seq tumor CPT0067070013 b99e93f4-77da-4e87-918d-b9d7b6a7e39d_mirnaseq_gdc_realn.bam 220150389 BAM harmonized CPTAC3 a877f800-f1df-4c30-8804-49cef5005e8b 09d2342fa8ea8dcd25d9d348e310f152 { 'aliquot_tag': 'ALQ_293dd42f', 'gdc_sample_type': 'Primary Tumor' } C3N-00546.RNA-Seq.chimeric.A.hg38 C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 6c317b54-a654-4433-b629-d33e8890fb18.rna_seq.chimeric.gdc_realn.bam 85645604 BAM chimeric harmonized CPTAC3 15ed702c-1e8a-4b1e-8804-7373c6bb86fc 10a01707c5a04f3f8beeab30348f3105 { 'aliquot_tag': 'ALQ_45037e4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00546.RNA-Seq.chimeric.T.hg38 C3N-00546 LUAD RNA-Seq tumor CPT0067070013 73d8000a-b295-4b05-89dd-268b53a8e27e.rna_seq.chimeric.gdc_realn.bam 60108586 BAM chimeric harmonized CPTAC3 764fe32e-855a-424d-964e-1d35e8aeb10d 0d0fd279cad0b2a673aadae0b43a035e { 'aliquot_tag': 'ALQ_293dd42f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00546.RNA-Seq.genomic.A.hg38 C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 6c317b54-a654-4433-b629-d33e8890fb18.rna_seq.genomic.gdc_realn.bam 8966041867 BAM genomic harmonized CPTAC3 ef930122-ea9f-4b9f-86c3-1debdbef8912 573ccc83cfdfab0fd1a80c0f0f215991 { 'aliquot_tag': 'ALQ_45037e4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00546.RNA-Seq.genomic.A.hg38 C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 6c317b54-a654-4433-b629-d33e8890fb18.rna_seq.genomic.gdc_realn.bam 8966041867 BAM genomic harmonized CPTAC3 6930f967-1067-4d73-8601-236ac8838746 573ccc83cfdfab0fd1a80c0f0f215991 { 'aliquot_tag': 'ALQ_45037e4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00546.RNA-Seq.genomic.T.hg38 C3N-00546 LUAD RNA-Seq tumor CPT0067070013 73d8000a-b295-4b05-89dd-268b53a8e27e.rna_seq.genomic.gdc_realn.bam 9006241779 BAM genomic harmonized CPTAC3 27d157bb-1734-4852-b762-70839b1ea207 f20a6b51ff71621eb36f3a9a437527d5 { 'aliquot_tag': 'ALQ_293dd42f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00546.RNA-Seq.R1_L003.T C3N-00546 LUAD RNA-Seq tumor CPT0067070013 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4177294750 FASTQ R1_L003 unaligned CPTAC3 a16e8643-3620-410b-bf65-f5585d84d6d9 05315c26746f9b83ebd2a065ebf187f2 { 'aliquot_tag': 'ALQ_293dd42f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00546.RNA-Seq.R1_L008.A C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 180103_UNC31-K00269_0105_AHNFGGBBXX_CCGTCC_S81_L008_R1_001.fastq.gz 4553021601 FASTQ R1_L008 unaligned CPTAC3 9355f328-7901-49ad-aa10-a44cdcc09b09 482f60e761f41d4cffeaf3ba2bdafa60 { 'aliquot_tag': 'ALQ_45037e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00546.RNA-Seq.R2_L003.T C3N-00546 LUAD RNA-Seq tumor CPT0067070013 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4564872627 FASTQ R2_L003 unaligned CPTAC3 346e852f-36d4-4a1c-ab55-3b44e213ba9b 71dedff291243474be94f8f891574693 { 'aliquot_tag': 'ALQ_293dd42f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00546.RNA-Seq.R2_L008.A C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 180103_UNC31-K00269_0105_AHNFGGBBXX_CCGTCC_S81_L008_R2_001.fastq.gz 4401394210 FASTQ R2_L008 unaligned CPTAC3 57483e4e-e448-493d-8506-ba821aa4c877 6d3bea573da72b0d35e40ebd43063762 { 'aliquot_tag': 'ALQ_45037e4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00546.RNA-Seq.R1_L003.T C3N-00546 LUAD RNA-Seq tumor CPT0067070013 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTCCGC_S9_L003_R1_001.fastq.gz 4177294750 FASTQ R1_L003 unaligned CPTAC3 a16e8643-3620-410b-bf65-f5585d84d6d9 05315c26746f9b83ebd2a065ebf187f2 { 'aliquot_tag': 'ALQ_293dd42f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00546.RNA-Seq.R1_L008.A C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 180103_UNC31-K00269_0105_AHNFGGBBXX_CCGTCC_S81_L008_R1_001.fastq.gz 4553021601 FASTQ R1_L008 unaligned CPTAC3 9355f328-7901-49ad-aa10-a44cdcc09b09 482f60e761f41d4cffeaf3ba2bdafa60 { 'aliquot_tag': 'ALQ_45037e4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00546.RNA-Seq.R2_L003.T C3N-00546 LUAD RNA-Seq tumor CPT0067070013 170906_UNC32-K00270_0058_BHLJ7FBBXX_GTCCGC_S9_L003_R2_001.fastq.gz 4564872627 FASTQ R2_L003 unaligned CPTAC3 346e852f-36d4-4a1c-ab55-3b44e213ba9b 71dedff291243474be94f8f891574693 { 'aliquot_tag': 'ALQ_293dd42f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00546.RNA-Seq.R2_L008.A C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 180103_UNC31-K00269_0105_AHNFGGBBXX_CCGTCC_S81_L008_R2_001.fastq.gz 4401394210 FASTQ R2_L008 unaligned CPTAC3 57483e4e-e448-493d-8506-ba821aa4c877 6d3bea573da72b0d35e40ebd43063762 { 'aliquot_tag': 'ALQ_45037e4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00546.RNA-Seq.transcriptome.A.hg38 C3N-00546 LUAD RNA-Seq tissue_normal CPT0067110006 6c317b54-a654-4433-b629-d33e8890fb18.rna_seq.transcriptome.gdc_realn.bam 10435092100 BAM transcriptome harmonized CPTAC3 c63e195d-1493-45b2-bc3e-c2a5139bb907 e70c151e67eca425fa8fe9292e00696d { 'aliquot_tag': 'ALQ_45037e4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00546.RNA-Seq.transcriptome.T.hg38 C3N-00546 LUAD RNA-Seq tumor CPT0067070013 73d8000a-b295-4b05-89dd-268b53a8e27e.rna_seq.transcriptome.gdc_realn.bam 10510554664 BAM transcriptome harmonized CPTAC3 db4b7c6c-bdce-433b-aa0e-67332f08ff73 7ee56f9a080c1d2a6d1ea8b6f4404fb2 { 'aliquot_tag': 'ALQ_293dd42f', 'gdc_sample_type': 'Primary Tumor' } C3N-00546.WGS.A C3N-00546 LUAD WGS tissue_normal CPT0067110009 CPT0067110009.WholeGenome.RP-1303.bam 67546955495 BAM aligned CPTAC3 4ea0c5a1-b031-42b2-a660-f9392d4ce4fd 1771b45afd4bed1eab178074707af5e7 { 'aliquot_tag': 'ALQ_94ef2a75', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21460,12 +23231,12 @@ C3N-00547.miRNA-Seq.T C3N-00547 LUAD miRNA-Seq tumor CPT0067250009 181012_UNC32- C3N-00547.miRNA-Seq.T.hg38 C3N-00547 LUAD miRNA-Seq tumor CPT0067250009 54b6ab73-6d58-4835-9069-3320fd8c5b67_mirnaseq_gdc_realn.bam 206476390 BAM harmonized CPTAC3 487f4d53-ae0d-4fbc-bda0-9ce2f75271c0 32271c59eddc984550fdfd9d99aad91f { 'aliquot_tag': 'ALQ_e7fbfe1b', 'gdc_sample_type': 'Primary Tumor' } C3N-00547.RNA-Seq.chimeric.A.hg38 C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 6497f5b4-b76b-4d67-b3cb-1ea5a0f0f171.rna_seq.chimeric.gdc_realn.bam 61373654 BAM chimeric harmonized CPTAC3 30a8bd8a-40e4-485e-83d0-571970e9706d 2ec5945c2eeaa11ab2daaf5443709691 { 'aliquot_tag': 'ALQ_b2b40e8b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00547.RNA-Seq.chimeric.T.hg38 C3N-00547 LUAD RNA-Seq tumor CPT0067250009 7428fad8-6e5f-4894-bf53-48f0ff2a4efc.rna_seq.chimeric.gdc_realn.bam 269108907 BAM chimeric harmonized CPTAC3 e11bb86b-4c2a-4619-9293-604f07ad0293 4218fe0b9b768f7a5a9b045226ed9c2b { 'aliquot_tag': 'ALQ_e7fbfe1b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00547.RNA-Seq.genomic.A.hg38 C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 6497f5b4-b76b-4d67-b3cb-1ea5a0f0f171.rna_seq.genomic.gdc_realn.bam 8965603220 BAM genomic harmonized CPTAC3 7e5c71bc-3235-433a-a217-e3d6ecc98411 a7d1c09855e8c82edb9a858714e04de0 { 'aliquot_tag': 'ALQ_b2b40e8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00547.RNA-Seq.genomic.T.hg38 C3N-00547 LUAD RNA-Seq tumor CPT0067250009 7428fad8-6e5f-4894-bf53-48f0ff2a4efc.rna_seq.genomic.gdc_realn.bam 8394780090 BAM genomic harmonized CPTAC3 7ef1b27c-9b88-4f62-9d18-ccd43059f1aa 7487d86482b5575c2ec7e473be3a746a { 'aliquot_tag': 'ALQ_e7fbfe1b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00547.RNA-Seq.R1_L008.A C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L008_R1_001.fastq.gz 3939937920 FASTQ R1_L008 unaligned CPTAC3 70f7d271-ed8c-4937-86e8-9bee4c523a4f 571b75112d98a4c6cfd91fa48416464e { 'aliquot_tag': 'ALQ_b2b40e8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00547.RNA-Seq.R1_L008.T C3N-00547 LUAD RNA-Seq tumor CPT0067250009 170830_UNC31-K00269_0078_AHLCVMBBXX_ATCACG_S5_L008_R1_001.fastq.gz 3843449961 FASTQ R1_L008 unaligned CPTAC3 6576483b-ff32-4d93-8aa7-ab69ab639ec2 97321e7dad011589dd3f6bb83282630e { 'aliquot_tag': 'ALQ_e7fbfe1b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00547.RNA-Seq.R2_L008.A C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L008_R2_001.fastq.gz 4441187376 FASTQ R2_L008 unaligned CPTAC3 cf65aa12-fe38-461f-ac85-607547d07c42 b929de83a2ec54e9fcae57693e558da1 { 'aliquot_tag': 'ALQ_b2b40e8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00547.RNA-Seq.R2_L008.T C3N-00547 LUAD RNA-Seq tumor CPT0067250009 170830_UNC31-K00269_0078_AHLCVMBBXX_ATCACG_S5_L008_R2_001.fastq.gz 3891032663 FASTQ R2_L008 unaligned CPTAC3 b32a3c43-e786-4031-bb9a-226c301d9e99 a3868bda57b76cfe6abb045dab3c70a9 { 'aliquot_tag': 'ALQ_e7fbfe1b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00547.RNA-Seq.genomic.A.hg38 C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 6497f5b4-b76b-4d67-b3cb-1ea5a0f0f171.rna_seq.genomic.gdc_realn.bam 8965603220 BAM genomic harmonized CPTAC3 51709e93-8717-476a-a90e-06ae3f4e1f34 a7d1c09855e8c82edb9a858714e04de0 { 'aliquot_tag': 'ALQ_b2b40e8b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00547.RNA-Seq.genomic.T.hg38 C3N-00547 LUAD RNA-Seq tumor CPT0067250009 7428fad8-6e5f-4894-bf53-48f0ff2a4efc.rna_seq.genomic.gdc_realn.bam 8394780090 BAM genomic harmonized CPTAC3 b4c1a1d0-d192-4d73-9f2d-772ef85409a9 7487d86482b5575c2ec7e473be3a746a { 'aliquot_tag': 'ALQ_e7fbfe1b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00547.RNA-Seq.R1_L008.A C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L008_R1_001.fastq.gz 3939937920 FASTQ R1_L008 unaligned CPTAC3 70f7d271-ed8c-4937-86e8-9bee4c523a4f 571b75112d98a4c6cfd91fa48416464e { 'aliquot_tag': 'ALQ_b2b40e8b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00547.RNA-Seq.R1_L008.T C3N-00547 LUAD RNA-Seq tumor CPT0067250009 170830_UNC31-K00269_0078_AHLCVMBBXX_ATCACG_S5_L008_R1_001.fastq.gz 3843449961 FASTQ R1_L008 unaligned CPTAC3 6576483b-ff32-4d93-8aa7-ab69ab639ec2 97321e7dad011589dd3f6bb83282630e { 'aliquot_tag': 'ALQ_e7fbfe1b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00547.RNA-Seq.R2_L008.A C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L008_R2_001.fastq.gz 4441187376 FASTQ R2_L008 unaligned CPTAC3 cf65aa12-fe38-461f-ac85-607547d07c42 b929de83a2ec54e9fcae57693e558da1 { 'aliquot_tag': 'ALQ_b2b40e8b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00547.RNA-Seq.R2_L008.T C3N-00547 LUAD RNA-Seq tumor CPT0067250009 170830_UNC31-K00269_0078_AHLCVMBBXX_ATCACG_S5_L008_R2_001.fastq.gz 3891032663 FASTQ R2_L008 unaligned CPTAC3 b32a3c43-e786-4031-bb9a-226c301d9e99 a3868bda57b76cfe6abb045dab3c70a9 { 'aliquot_tag': 'ALQ_e7fbfe1b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00547.RNA-Seq.transcriptome.A.hg38 C3N-00547 LUAD RNA-Seq tissue_normal CPT0067290006 6497f5b4-b76b-4d67-b3cb-1ea5a0f0f171.rna_seq.transcriptome.gdc_realn.bam 9592262018 BAM transcriptome harmonized CPTAC3 8a88f6cd-32a9-43c6-9cc5-440b2527c1d2 6e6b3f79f22ae540f3f11ae8abac0a75 { 'aliquot_tag': 'ALQ_b2b40e8b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00547.RNA-Seq.transcriptome.T.hg38 C3N-00547 LUAD RNA-Seq tumor CPT0067250009 7428fad8-6e5f-4894-bf53-48f0ff2a4efc.rna_seq.transcriptome.gdc_realn.bam 8336670302 BAM transcriptome harmonized CPTAC3 b5ecad11-8a96-416d-9a56-c0d0f98aafc6 98e7358ae4bc599255d4e5137f27c85a { 'aliquot_tag': 'ALQ_e7fbfe1b', 'gdc_sample_type': 'Primary Tumor' } C3N-00547.WGS.A C3N-00547 LUAD WGS tissue_normal CPT0067290009 CPT0067290009.WholeGenome.RP-1303.bam 76205566754 BAM aligned CPTAC3 4685371b-f3ce-4c24-976e-35eea0e432fe e8b65e7f392cfe20ad363b7175894990 { 'aliquot_tag': 'ALQ_220b131a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21490,12 +23261,12 @@ C3N-00549.miRNA-Seq.T C3N-00549 LUAD miRNA-Seq tumor CPT0067450009 181108_UNC31- C3N-00549.miRNA-Seq.T.hg38 C3N-00549 LUAD miRNA-Seq tumor CPT0067450009 16eaff14-a03a-4727-85b5-defc7b451f35_mirnaseq_gdc_realn.bam 209778933 BAM harmonized CPTAC3 f883a8ea-55ac-474d-9262-59c6fe4f9ac8 765598ef09c4898cc4063f46a287631c { 'aliquot_tag': 'ALQ_31a21d06', 'gdc_sample_type': 'Primary Tumor' } C3N-00549.RNA-Seq.chimeric.A.hg38 C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 c0479326-d92f-421e-a01b-4216a54b442a.rna_seq.chimeric.gdc_realn.bam 81482578 BAM chimeric harmonized CPTAC3 c7005007-de72-4115-a477-6534eff4df99 ec35d4f8c3dbfd41392950d0e3e3bddd { 'aliquot_tag': 'ALQ_acda6361', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00549.RNA-Seq.chimeric.T.hg38 C3N-00549 LUAD RNA-Seq tumor CPT0067450009 d7927187-cbc0-4e31-babc-35e08de34960.rna_seq.chimeric.gdc_realn.bam 30198238 BAM chimeric harmonized CPTAC3 5f11b440-ea2e-4736-801f-597782877140 1a8513703e23ab88bfbaad66e1f623bf { 'aliquot_tag': 'ALQ_31a21d06', 'gdc_sample_type': 'Primary Tumor' } -C3N-00549.RNA-Seq.genomic.A.hg38 C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 c0479326-d92f-421e-a01b-4216a54b442a.rna_seq.genomic.gdc_realn.bam 8503421614 BAM genomic harmonized CPTAC3 2f1366c4-e688-4644-b107-13263a0ea2ae ad1d1f0126aa385f629e588e15317931 { 'aliquot_tag': 'ALQ_acda6361', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00549.RNA-Seq.genomic.T.hg38 C3N-00549 LUAD RNA-Seq tumor CPT0067450009 d7927187-cbc0-4e31-babc-35e08de34960.rna_seq.genomic.gdc_realn.bam 8194475146 BAM genomic harmonized CPTAC3 80b029ea-0089-4859-92dd-f6aafd28fe01 7dc27c55c21ef616628d15ddd4ec281d { 'aliquot_tag': 'ALQ_31a21d06', 'gdc_sample_type': 'Primary Tumor' } -C3N-00549.RNA-Seq.R1_L005.T C3N-00549 LUAD RNA-Seq tumor CPT0067450009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTGAT_S17_L005_R1_001.fastq.gz 4010196717 FASTQ R1_L005 unaligned CPTAC3 154668d4-59cb-49a9-aa0d-08461440f214 b7cd7d05fd5d1484642fe63765a28831 { 'aliquot_tag': 'ALQ_31a21d06', 'gdc_sample_type': 'Primary Tumor' } -C3N-00549.RNA-Seq.R1_L008.A C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L008_R1_001.fastq.gz 3979552161 FASTQ R1_L008 unaligned CPTAC3 af200d9b-d9c0-4a76-8ca3-0749e2d15a57 a4d7e99332a610f514cb4f292b01551d { 'aliquot_tag': 'ALQ_acda6361', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00549.RNA-Seq.R2_L005.T C3N-00549 LUAD RNA-Seq tumor CPT0067450009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTGAT_S17_L005_R2_001.fastq.gz 4272357063 FASTQ R2_L005 unaligned CPTAC3 44ea39eb-a35d-4a3c-ab7f-8a652fe9b44e dd9b4d66f4f11a6126d44a832ee15ab3 { 'aliquot_tag': 'ALQ_31a21d06', 'gdc_sample_type': 'Primary Tumor' } -C3N-00549.RNA-Seq.R2_L008.A C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L008_R2_001.fastq.gz 4093907616 FASTQ R2_L008 unaligned CPTAC3 02fa58de-b4e8-49ec-b38c-0fdb07d6ca3b b9a1d3e6621da69eaa7bd1f4b0c6f8e3 { 'aliquot_tag': 'ALQ_acda6361', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00549.RNA-Seq.genomic.A.hg38 C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 c0479326-d92f-421e-a01b-4216a54b442a.rna_seq.genomic.gdc_realn.bam 8503421614 BAM genomic harmonized CPTAC3 f25b1c0f-53d3-4814-8295-ad511d5ee1d4 ad1d1f0126aa385f629e588e15317931 { 'aliquot_tag': 'ALQ_acda6361', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00549.RNA-Seq.genomic.T.hg38 C3N-00549 LUAD RNA-Seq tumor CPT0067450009 d7927187-cbc0-4e31-babc-35e08de34960.rna_seq.genomic.gdc_realn.bam 8194475146 BAM genomic harmonized CPTAC3 b3a3a081-52ac-40d9-abd8-3f8a77c46544 7dc27c55c21ef616628d15ddd4ec281d { 'aliquot_tag': 'ALQ_31a21d06', 'gdc_sample_type': 'Primary Tumor' } +C3N-00549.RNA-Seq.R1_L005.T C3N-00549 LUAD RNA-Seq tumor CPT0067450009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTGAT_S17_L005_R1_001.fastq.gz 4010196717 FASTQ R1_L005 unaligned CPTAC3 154668d4-59cb-49a9-aa0d-08461440f214 b7cd7d05fd5d1484642fe63765a28831 { 'aliquot_tag': 'ALQ_31a21d06', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00549.RNA-Seq.R1_L008.A C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L008_R1_001.fastq.gz 3979552161 FASTQ R1_L008 unaligned CPTAC3 af200d9b-d9c0-4a76-8ca3-0749e2d15a57 a4d7e99332a610f514cb4f292b01551d { 'aliquot_tag': 'ALQ_acda6361', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00549.RNA-Seq.R2_L005.T C3N-00549 LUAD RNA-Seq tumor CPT0067450009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTGAT_S17_L005_R2_001.fastq.gz 4272357063 FASTQ R2_L005 unaligned CPTAC3 44ea39eb-a35d-4a3c-ab7f-8a652fe9b44e dd9b4d66f4f11a6126d44a832ee15ab3 { 'aliquot_tag': 'ALQ_31a21d06', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00549.RNA-Seq.R2_L008.A C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGAAA_S8_L008_R2_001.fastq.gz 4093907616 FASTQ R2_L008 unaligned CPTAC3 02fa58de-b4e8-49ec-b38c-0fdb07d6ca3b b9a1d3e6621da69eaa7bd1f4b0c6f8e3 { 'aliquot_tag': 'ALQ_acda6361', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00549.RNA-Seq.transcriptome.A.hg38 C3N-00549 LUAD RNA-Seq tissue_normal CPT0067470007 c0479326-d92f-421e-a01b-4216a54b442a.rna_seq.transcriptome.gdc_realn.bam 9352104723 BAM transcriptome harmonized CPTAC3 513c2cfa-719d-441a-af51-26fc041ac32f eb9ce08ceb96af9b9d3a608d753b73ba { 'aliquot_tag': 'ALQ_acda6361', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00549.RNA-Seq.transcriptome.T.hg38 C3N-00549 LUAD RNA-Seq tumor CPT0067450009 d7927187-cbc0-4e31-babc-35e08de34960.rna_seq.transcriptome.gdc_realn.bam 9644973629 BAM transcriptome harmonized CPTAC3 1ec3a04c-304d-417c-bb07-d3bc888b9964 84395712beceef5da0749abedd3540f4 { 'aliquot_tag': 'ALQ_31a21d06', 'gdc_sample_type': 'Primary Tumor' } C3N-00549.WGS.A C3N-00549 LUAD WGS tissue_normal CPT0067470010 CPT0067470010.WholeGenome.RP-1303.bam 62419695456 BAM aligned CPTAC3 92c6844e-df24-492b-883a-4ff90429bb1e c5da8d7e35deb74be6d800d454b5b877 { 'aliquot_tag': 'ALQ_2ba5c783', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21520,12 +23291,12 @@ C3N-00550.miRNA-Seq.T C3N-00550 LUAD miRNA-Seq tumor CPT0067620009 181108_UNC31- C3N-00550.miRNA-Seq.T.hg38 C3N-00550 LUAD miRNA-Seq tumor CPT0067620009 67bb7154-cfb4-4c29-ba67-c025d395d885_mirnaseq_gdc_realn.bam 206312806 BAM harmonized CPTAC3 a70f59d8-32f2-4fa2-bc4c-bb1c14a5b74a 5f1fb6b42d60b5f69f201ba39a15a4a8 { 'aliquot_tag': 'ALQ_ce4a601d', 'gdc_sample_type': 'Primary Tumor' } C3N-00550.RNA-Seq.chimeric.A.hg38 C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 b3119e11-e196-4fcb-80f0-18a313f17472.rna_seq.chimeric.gdc_realn.bam 116784292 BAM chimeric harmonized CPTAC3 bf157dcf-f0dd-4e4f-b1a5-3be01709365d b283b7602bee409ac6ce634ec64ae106 { 'aliquot_tag': 'ALQ_5d492159', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00550.RNA-Seq.chimeric.T.hg38 C3N-00550 LUAD RNA-Seq tumor CPT0067620009 b0c81966-4fbe-4da1-8b34-136b2de095c5.rna_seq.chimeric.gdc_realn.bam 22916056 BAM chimeric harmonized CPTAC3 685b30c1-88b2-4991-8efa-d52e0eff1f15 b10e59383c68df5f630b2bc4ee5b8199 { 'aliquot_tag': 'ALQ_ce4a601d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00550.RNA-Seq.genomic.A.hg38 C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 b3119e11-e196-4fcb-80f0-18a313f17472.rna_seq.genomic.gdc_realn.bam 8303918161 BAM genomic harmonized CPTAC3 95415c79-8637-4fb4-bf99-71c506db1536 6be66604a701934952715228c9434f77 { 'aliquot_tag': 'ALQ_5d492159', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00550.RNA-Seq.genomic.T.hg38 C3N-00550 LUAD RNA-Seq tumor CPT0067620009 b0c81966-4fbe-4da1-8b34-136b2de095c5.rna_seq.genomic.gdc_realn.bam 7495958990 BAM genomic harmonized CPTAC3 c6c0c338-e50b-41a6-ba04-0cb87a9128cb 0c2cb0a882cbbcf144b9202fca92997a { 'aliquot_tag': 'ALQ_ce4a601d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00550.RNA-Seq.R1_L005.T C3N-00550 LUAD RNA-Seq tumor CPT0067620009 170828_UNC31-K00269_0077_AHLF33BBXX_ATTCCT_S20_L005_R1_001.fastq.gz 3515716414 FASTQ R1_L005 unaligned CPTAC3 791fb1c3-7cd1-4ca5-a331-3bef8adf2c40 562bb187ae058e8cc9e5ffd515028e93 { 'aliquot_tag': 'ALQ_ce4a601d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00550.RNA-Seq.R1_L007.A C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L007_R1_001.fastq.gz 4002937675 FASTQ R1_L007 unaligned CPTAC3 4cc60b03-ca6b-43ee-bc7c-ff4656d7476a d9d22523f7745cb24838c2626bf4b7de { 'aliquot_tag': 'ALQ_5d492159', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00550.RNA-Seq.R2_L005.T C3N-00550 LUAD RNA-Seq tumor CPT0067620009 170828_UNC31-K00269_0077_AHLF33BBXX_ATTCCT_S20_L005_R2_001.fastq.gz 3843912618 FASTQ R2_L005 unaligned CPTAC3 8b6f0c92-16a0-4c0c-9cd2-17fafd97572d ab491e9ebe363492345608c2f27a0013 { 'aliquot_tag': 'ALQ_ce4a601d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00550.RNA-Seq.R2_L007.A C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L007_R2_001.fastq.gz 4464279179 FASTQ R2_L007 unaligned CPTAC3 a5cb2d01-441b-4a21-92b5-7233e6b4bf0b 6215ee56fce751002bdb76d1cb1946ba { 'aliquot_tag': 'ALQ_5d492159', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00550.RNA-Seq.genomic.A.hg38 C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 b3119e11-e196-4fcb-80f0-18a313f17472.rna_seq.genomic.gdc_realn.bam 8303918161 BAM genomic harmonized CPTAC3 3b9924e5-82de-4cd4-b0f9-ea98f7db7b93 6be66604a701934952715228c9434f77 { 'aliquot_tag': 'ALQ_5d492159', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00550.RNA-Seq.genomic.T.hg38 C3N-00550 LUAD RNA-Seq tumor CPT0067620009 b0c81966-4fbe-4da1-8b34-136b2de095c5.rna_seq.genomic.gdc_realn.bam 7495958990 BAM genomic harmonized CPTAC3 9675c43e-0c7c-4165-b3d5-c340267ad8ca 0c2cb0a882cbbcf144b9202fca92997a { 'aliquot_tag': 'ALQ_ce4a601d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00550.RNA-Seq.R1_L005.T C3N-00550 LUAD RNA-Seq tumor CPT0067620009 170828_UNC31-K00269_0077_AHLF33BBXX_ATTCCT_S20_L005_R1_001.fastq.gz 3515716414 FASTQ R1_L005 unaligned CPTAC3 791fb1c3-7cd1-4ca5-a331-3bef8adf2c40 562bb187ae058e8cc9e5ffd515028e93 { 'aliquot_tag': 'ALQ_ce4a601d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00550.RNA-Seq.R1_L007.A C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L007_R1_001.fastq.gz 4002937675 FASTQ R1_L007 unaligned CPTAC3 4cc60b03-ca6b-43ee-bc7c-ff4656d7476a d9d22523f7745cb24838c2626bf4b7de { 'aliquot_tag': 'ALQ_5d492159', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-00550.RNA-Seq.R2_L005.T C3N-00550 LUAD RNA-Seq tumor CPT0067620009 170828_UNC31-K00269_0077_AHLF33BBXX_ATTCCT_S20_L005_R2_001.fastq.gz 3843912618 FASTQ R2_L005 unaligned CPTAC3 8b6f0c92-16a0-4c0c-9cd2-17fafd97572d ab491e9ebe363492345608c2f27a0013 { 'aliquot_tag': 'ALQ_ce4a601d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00550.RNA-Seq.R2_L007.A C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTGGCC_S3_L007_R2_001.fastq.gz 4464279179 FASTQ R2_L007 unaligned CPTAC3 a5cb2d01-441b-4a21-92b5-7233e6b4bf0b 6215ee56fce751002bdb76d1cb1946ba { 'aliquot_tag': 'ALQ_5d492159', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-00550.RNA-Seq.transcriptome.A.hg38 C3N-00550 LUAD RNA-Seq tissue_normal CPT0067770006 b3119e11-e196-4fcb-80f0-18a313f17472.rna_seq.transcriptome.gdc_realn.bam 9843406068 BAM transcriptome harmonized CPTAC3 55d01376-65d5-4866-b7c8-2a6d04ead5dd 3a12230c2a17a4d13042784259e6a853 { 'aliquot_tag': 'ALQ_5d492159', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00550.RNA-Seq.transcriptome.T.hg38 C3N-00550 LUAD RNA-Seq tumor CPT0067620009 b0c81966-4fbe-4da1-8b34-136b2de095c5.rna_seq.transcriptome.gdc_realn.bam 10623267730 BAM transcriptome harmonized CPTAC3 34c714b2-040a-49e7-8abe-577e63367bef d06e6a92a00ae8f09ceb32c61f9db8e3 { 'aliquot_tag': 'ALQ_ce4a601d', 'gdc_sample_type': 'Primary Tumor' } C3N-00550.WGS.A C3N-00550 LUAD WGS tissue_normal CPT0067770009 CPT0067770009.WholeGenome.RP-1303.bam 56380642062 BAM aligned CPTAC3 8bd7ae54-dadc-46b8-a826-d8123c48c9cd a232864e8cc7710d15fd2fed209946b1 { 'aliquot_tag': 'ALQ_cdf63cc8', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21550,12 +23321,12 @@ C3N-00551.miRNA-Seq.T C3N-00551 LUAD miRNA-Seq tumor CPT0067940009 181108_UNC31- C3N-00551.miRNA-Seq.T.hg38 C3N-00551 LUAD miRNA-Seq tumor CPT0067940009 0316fde7-9410-4bf4-8ea9-0fcab43a10fa_mirnaseq_gdc_realn.bam 195505530 BAM harmonized CPTAC3 6675de2d-d83d-4c5f-9518-2eb3cb6c35b4 8ffc9bb7ebe66e5addfd95ba4efa820b { 'aliquot_tag': 'ALQ_b05c2768', 'gdc_sample_type': 'Primary Tumor' } C3N-00551.RNA-Seq.chimeric.A.hg38 C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 2b44e0c6-54ba-4f73-91d0-87970492c908.rna_seq.chimeric.gdc_realn.bam 93572212 BAM chimeric harmonized CPTAC3 68f597b9-a951-4d8c-866d-51aa81334445 6ee1f19dcd99bb774d47603351238014 { 'aliquot_tag': 'ALQ_1d831349', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00551.RNA-Seq.chimeric.T.hg38 C3N-00551 LUAD RNA-Seq tumor CPT0067940009 a2af68d8-5013-4450-9411-2b0d3c72eeaf.rna_seq.chimeric.gdc_realn.bam 47838932 BAM chimeric harmonized CPTAC3 4594b4c5-fcba-4b65-8821-1f6b74c4d352 cb34022c0b7446668df49a38174589da { 'aliquot_tag': 'ALQ_b05c2768', 'gdc_sample_type': 'Primary Tumor' } -C3N-00551.RNA-Seq.genomic.A.hg38 C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 2b44e0c6-54ba-4f73-91d0-87970492c908.rna_seq.genomic.gdc_realn.bam 8977742637 BAM genomic harmonized CPTAC3 f0e3fd6c-fbde-4741-8a00-b5373e1f7bf2 66a543e61678364853722dd15b22ff9e { 'aliquot_tag': 'ALQ_1d831349', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00551.RNA-Seq.genomic.T.hg38 C3N-00551 LUAD RNA-Seq tumor CPT0067940009 a2af68d8-5013-4450-9411-2b0d3c72eeaf.rna_seq.genomic.gdc_realn.bam 8885705639 BAM genomic harmonized CPTAC3 8f3b46fa-ae1f-4f48-9a3c-90722f3dbb25 84df683b06d8cf18c5798b6917d9e72f { 'aliquot_tag': 'ALQ_b05c2768', 'gdc_sample_type': 'Primary Tumor' } -C3N-00551.RNA-Seq.R1_L004.T C3N-00551 LUAD RNA-Seq tumor CPT0067940009 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L004_R1_001.fastq.gz 4110274310 FASTQ R1_L004 unaligned CPTAC3 29bd87a3-d9bd-48dc-bd2e-2697bae33679 be57f997b4a94238c33a97ac7f4d9969 { 'aliquot_tag': 'ALQ_b05c2768', 'gdc_sample_type': 'Primary Tumor' } -C3N-00551.RNA-Seq.R1_L008.A C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L008_R1_001.fastq.gz 3992893950 FASTQ R1_L008 unaligned CPTAC3 c33dd20d-f90c-4c90-80a9-5a73a584047d 42c0b54747559ab7f3f09b374881175d { 'aliquot_tag': 'ALQ_1d831349', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00551.RNA-Seq.R2_L004.T C3N-00551 LUAD RNA-Seq tumor CPT0067940009 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L004_R2_001.fastq.gz 4159424531 FASTQ R2_L004 unaligned CPTAC3 c958395d-0d81-4be2-90ac-d31e603ea771 07e6925c893886916560ca6d1b504cdd { 'aliquot_tag': 'ALQ_b05c2768', 'gdc_sample_type': 'Primary Tumor' } -C3N-00551.RNA-Seq.R2_L008.A C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L008_R2_001.fastq.gz 4462100729 FASTQ R2_L008 unaligned CPTAC3 6a947afc-c67d-471c-8ed0-26d17a3b1ea6 9d8303d90190a6899510944711c8b36b { 'aliquot_tag': 'ALQ_1d831349', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00551.RNA-Seq.genomic.A.hg38 C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 2b44e0c6-54ba-4f73-91d0-87970492c908.rna_seq.genomic.gdc_realn.bam 8977742637 BAM genomic harmonized CPTAC3 20eb1915-7928-4ad4-8675-a4f695bb3194 66a543e61678364853722dd15b22ff9e { 'aliquot_tag': 'ALQ_1d831349', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00551.RNA-Seq.genomic.T.hg38 C3N-00551 LUAD RNA-Seq tumor CPT0067940009 a2af68d8-5013-4450-9411-2b0d3c72eeaf.rna_seq.genomic.gdc_realn.bam 8885705639 BAM genomic harmonized CPTAC3 d5ed9855-21a5-4f30-8bb4-f986fff7a861 84df683b06d8cf18c5798b6917d9e72f { 'aliquot_tag': 'ALQ_b05c2768', 'gdc_sample_type': 'Primary Tumor' } +C3N-00551.RNA-Seq.R1_L004.T C3N-00551 LUAD RNA-Seq tumor CPT0067940009 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L004_R1_001.fastq.gz 4110274310 FASTQ R1_L004 unaligned CPTAC3 29bd87a3-d9bd-48dc-bd2e-2697bae33679 be57f997b4a94238c33a97ac7f4d9969 { 'aliquot_tag': 'ALQ_b05c2768', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00551.RNA-Seq.R1_L008.A C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L008_R1_001.fastq.gz 3992893950 FASTQ R1_L008 unaligned CPTAC3 c33dd20d-f90c-4c90-80a9-5a73a584047d 42c0b54747559ab7f3f09b374881175d { 'aliquot_tag': 'ALQ_1d831349', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00551.RNA-Seq.R2_L004.T C3N-00551 LUAD RNA-Seq tumor CPT0067940009 170828_UNC31-K00269_0077_AHLF33BBXX_ATCACG_S15_L004_R2_001.fastq.gz 4159424531 FASTQ R2_L004 unaligned CPTAC3 c958395d-0d81-4be2-90ac-d31e603ea771 07e6925c893886916560ca6d1b504cdd { 'aliquot_tag': 'ALQ_b05c2768', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00551.RNA-Seq.R2_L008.A C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 171215_UNC32-K00270_0073_BHN3NFBBXX_GTTTCG_S7_L008_R2_001.fastq.gz 4462100729 FASTQ R2_L008 unaligned CPTAC3 6a947afc-c67d-471c-8ed0-26d17a3b1ea6 9d8303d90190a6899510944711c8b36b { 'aliquot_tag': 'ALQ_1d831349', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00551.RNA-Seq.transcriptome.A.hg38 C3N-00551 LUAD RNA-Seq tissue_normal CPT0067950006 2b44e0c6-54ba-4f73-91d0-87970492c908.rna_seq.transcriptome.gdc_realn.bam 9726948279 BAM transcriptome harmonized CPTAC3 e1efaa1e-80d6-4b84-9ed2-8efa55e7e2af 40a19b3467fd6df191c7db2ae8755a60 { 'aliquot_tag': 'ALQ_1d831349', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00551.RNA-Seq.transcriptome.T.hg38 C3N-00551 LUAD RNA-Seq tumor CPT0067940009 a2af68d8-5013-4450-9411-2b0d3c72eeaf.rna_seq.transcriptome.gdc_realn.bam 11285297272 BAM transcriptome harmonized CPTAC3 8cd9eff7-0578-4d48-b854-3ac862382396 ed4cbedfa0a453fd873bc416e0895a38 { 'aliquot_tag': 'ALQ_b05c2768', 'gdc_sample_type': 'Primary Tumor' } C3N-00551.WGS.A C3N-00551 LUAD WGS tissue_normal CPT0067950009 CPT0067950009.WholeGenome.RP-1303.bam 61728450587 BAM aligned CPTAC3 76f29f7f-8c65-4c4b-9e25-249a9a085a8a 3d821aa2f9be3d1007a0e5b83516ede9 { 'aliquot_tag': 'ALQ_8d3c0ed8', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21580,12 +23351,12 @@ C3N-00552.miRNA-Seq.T C3N-00552 LUAD miRNA-Seq tumor CPT0068100009 181108_UNC31- C3N-00552.miRNA-Seq.T.hg38 C3N-00552 LUAD miRNA-Seq tumor CPT0068100009 3e7169fd-38f2-47bc-9812-5fc122994e44_mirnaseq_gdc_realn.bam 180785685 BAM harmonized CPTAC3 197c142c-69cd-4f1a-8bea-ff0664394d1f 6756f6f9927554604cd8cf636fa4a3b8 { 'aliquot_tag': 'ALQ_5fc7732c', 'gdc_sample_type': 'Primary Tumor' } C3N-00552.RNA-Seq.chimeric.A.hg38 C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 e2a03b03-5cea-4566-9052-65189892c042.rna_seq.chimeric.gdc_realn.bam 97641273 BAM chimeric harmonized CPTAC3 b5a3f5c8-8d65-4749-aae0-f9d3e50b0994 41f9353f445be0eb461fd70ea67bc1d8 { 'aliquot_tag': 'ALQ_88d8146d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00552.RNA-Seq.chimeric.T.hg38 C3N-00552 LUAD RNA-Seq tumor CPT0068100009 d93643e8-f6bc-4673-8318-ad1157dbaf67.rna_seq.chimeric.gdc_realn.bam 27104175 BAM chimeric harmonized CPTAC3 7b6b510d-bf8f-4072-9004-9b23ce6926ad 42ea53610afc7e695d4de0e0d6629e73 { 'aliquot_tag': 'ALQ_5fc7732c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00552.RNA-Seq.genomic.A.hg38 C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 e2a03b03-5cea-4566-9052-65189892c042.rna_seq.genomic.gdc_realn.bam 8809570236 BAM genomic harmonized CPTAC3 bed0ad61-a47d-4451-a032-7f3c04681d09 0dcaa2ac1c3767cafa9d98a3922895de { 'aliquot_tag': 'ALQ_88d8146d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00552.RNA-Seq.genomic.A.hg38 C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 e2a03b03-5cea-4566-9052-65189892c042.rna_seq.genomic.gdc_realn.bam 8809570236 BAM genomic harmonized CPTAC3 edbafefc-d95c-4ef8-a775-d189672aa5eb 0dcaa2ac1c3767cafa9d98a3922895de { 'aliquot_tag': 'ALQ_88d8146d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00552.RNA-Seq.genomic.T.hg38 C3N-00552 LUAD RNA-Seq tumor CPT0068100009 d93643e8-f6bc-4673-8318-ad1157dbaf67.rna_seq.genomic.gdc_realn.bam 8614145561 BAM genomic harmonized CPTAC3 9f855f9c-9559-4b0c-ae88-c2d92797d649 4b089147536d87695a34f6aed1a7e347 { 'aliquot_tag': 'ALQ_5fc7732c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00552.RNA-Seq.R1_L004.T C3N-00552 LUAD RNA-Seq tumor CPT0068100009 170828_UNC31-K00269_0077_AHLF33BBXX_CGATGT_S14_L004_R1_001.fastq.gz 4015266671 FASTQ R1_L004 unaligned CPTAC3 1978e5dc-257f-4e5d-9c63-ac5fc0067c91 05100d5e33b1ff26caad98be3faf04dc { 'aliquot_tag': 'ALQ_5fc7732c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00552.RNA-Seq.R1_L007.A C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L007_R1_001.fastq.gz 3627754185 FASTQ R1_L007 unaligned CPTAC3 d76399c6-80ce-4766-a6e1-ca1b85a7ea51 a2696327cc851ccb9297f1158a1a0069 { 'aliquot_tag': 'ALQ_88d8146d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00552.RNA-Seq.R2_L004.T C3N-00552 LUAD RNA-Seq tumor CPT0068100009 170828_UNC31-K00269_0077_AHLF33BBXX_CGATGT_S14_L004_R2_001.fastq.gz 4316107755 FASTQ R2_L004 unaligned CPTAC3 212bf3ea-e284-42bd-bd24-0247b4a534c1 0793d22cede912553043b6c9e7fd7b2a { 'aliquot_tag': 'ALQ_5fc7732c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00552.RNA-Seq.R2_L007.A C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L007_R2_001.fastq.gz 4053540193 FASTQ R2_L007 unaligned CPTAC3 5e971d5a-cc93-4c9f-8dbc-cc242579c8a7 c1c240343af24d316f5aee3d1889bb55 { 'aliquot_tag': 'ALQ_88d8146d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00552.RNA-Seq.R1_L004.T C3N-00552 LUAD RNA-Seq tumor CPT0068100009 170828_UNC31-K00269_0077_AHLF33BBXX_CGATGT_S14_L004_R1_001.fastq.gz 4015266671 FASTQ R1_L004 unaligned CPTAC3 1978e5dc-257f-4e5d-9c63-ac5fc0067c91 05100d5e33b1ff26caad98be3faf04dc { 'aliquot_tag': 'ALQ_5fc7732c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00552.RNA-Seq.R1_L007.A C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L007_R1_001.fastq.gz 3627754185 FASTQ R1_L007 unaligned CPTAC3 d76399c6-80ce-4766-a6e1-ca1b85a7ea51 a2696327cc851ccb9297f1158a1a0069 { 'aliquot_tag': 'ALQ_88d8146d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-00552.RNA-Seq.R2_L004.T C3N-00552 LUAD RNA-Seq tumor CPT0068100009 170828_UNC31-K00269_0077_AHLF33BBXX_CGATGT_S14_L004_R2_001.fastq.gz 4316107755 FASTQ R2_L004 unaligned CPTAC3 212bf3ea-e284-42bd-bd24-0247b4a534c1 0793d22cede912553043b6c9e7fd7b2a { 'aliquot_tag': 'ALQ_5fc7732c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00552.RNA-Seq.R2_L007.A C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGTACG_S2_L007_R2_001.fastq.gz 4053540193 FASTQ R2_L007 unaligned CPTAC3 5e971d5a-cc93-4c9f-8dbc-cc242579c8a7 c1c240343af24d316f5aee3d1889bb55 { 'aliquot_tag': 'ALQ_88d8146d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-00552.RNA-Seq.transcriptome.A.hg38 C3N-00552 LUAD RNA-Seq tissue_normal CPT0068130006 e2a03b03-5cea-4566-9052-65189892c042.rna_seq.transcriptome.gdc_realn.bam 7700653199 BAM transcriptome harmonized CPTAC3 f0cdf6d7-aa6b-4959-84e6-75a81a14b736 6cae67979e56cbd7adb55f2ed46496b8 { 'aliquot_tag': 'ALQ_88d8146d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00552.RNA-Seq.transcriptome.T.hg38 C3N-00552 LUAD RNA-Seq tumor CPT0068100009 d93643e8-f6bc-4673-8318-ad1157dbaf67.rna_seq.transcriptome.gdc_realn.bam 11156375343 BAM transcriptome harmonized CPTAC3 0c99c22e-9ebd-43c3-8d45-e07892b7ec39 b2d95e417c9b2630805b1243064a74e8 { 'aliquot_tag': 'ALQ_5fc7732c', 'gdc_sample_type': 'Primary Tumor' } C3N-00552.WGS.A C3N-00552 LUAD WGS tissue_normal CPT0068130009 CPT0068130009.WholeGenome.RP-1303.bam 57071686575 BAM aligned CPTAC3 81d4f4e5-c6dd-4848-9d06-9ad4fef36961 0f2e974d37ac5d103d44e643ee7b048b { 'aliquot_tag': 'ALQ_186709fc', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21610,12 +23381,12 @@ C3N-00555.miRNA-Seq.T C3N-00555 LSCC miRNA-Seq tumor CPT0068280009 190228_UNC32- C3N-00555.miRNA-Seq.T.hg38 C3N-00555 LSCC miRNA-Seq tumor CPT0068280009 aec6d1ee-56a4-4b35-9303-e11742430f33_mirnaseq_gdc_realn.bam 223105127 BAM harmonized CPTAC3 4d4e1e56-e0c8-45c7-aae8-aa8f2f28482a 0ca0e5a089e703be12b88cd3f4a7bfa3 { 'aliquot_tag': 'ALQ_e9234a43', 'gdc_sample_type': 'Primary Tumor' } C3N-00555.RNA-Seq.chimeric.A.hg38 C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 cb5d0984-eedf-439b-9892-f5530355aa0c.rna_seq.chimeric.gdc_realn.bam 32176855 BAM chimeric harmonized CPTAC3 c3a74dca-a3a8-4d4a-8eca-99170e4a97c2 2902ec6d0a6cc505881e1f27b8f432c2 { 'aliquot_tag': 'ALQ_f8709cd6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00555.RNA-Seq.chimeric.T.hg38 C3N-00555 LSCC RNA-Seq tumor CPT0068280009 d5fc1def-d651-4d9c-acbe-315e65ccd084.rna_seq.chimeric.gdc_realn.bam 28680551 BAM chimeric harmonized CPTAC3 5c619c6c-67fb-4284-b957-dfd4f5292c3b 24a0bafe44c2dd1e1e296ffa0ea35042 { 'aliquot_tag': 'ALQ_e9234a43', 'gdc_sample_type': 'Primary Tumor' } -C3N-00555.RNA-Seq.genomic.A.hg38 C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 cb5d0984-eedf-439b-9892-f5530355aa0c.rna_seq.genomic.gdc_realn.bam 7118429765 BAM genomic harmonized CPTAC3 81c0be45-796c-4fea-8647-f56ba8b9bc4a fcd764e7c68eb72fb0fe9c1c803b5e1b { 'aliquot_tag': 'ALQ_f8709cd6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00555.RNA-Seq.genomic.T.hg38 C3N-00555 LSCC RNA-Seq tumor CPT0068280009 d5fc1def-d651-4d9c-acbe-315e65ccd084.rna_seq.genomic.gdc_realn.bam 8891282302 BAM genomic harmonized CPTAC3 2dfa6aa8-953f-482c-8769-585ffd84a16c 38f3fd2cc62dd951d2b11e2556961b77 { 'aliquot_tag': 'ALQ_e9234a43', 'gdc_sample_type': 'Primary Tumor' } -C3N-00555.RNA-Seq.R1_L004.T C3N-00555 LSCC RNA-Seq tumor CPT0068280009 170828_UNC31-K00269_0077_AHLF33BBXX_TTAGGC_S13_L004_R1_001.fastq.gz 4111280734 FASTQ R1_L004 unaligned CPTAC3 e4d8ed76-350f-43c7-bc82-a3dd416e97ca 4c32b0fe0469917bd62cc37c8c98423d { 'aliquot_tag': 'ALQ_e9234a43', 'gdc_sample_type': 'Primary Tumor' } -C3N-00555.RNA-Seq.R1_L006.A C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTTGA_S24_L006_R1_001.fastq.gz 3203664411 FASTQ R1_L006 unaligned CPTAC3 c6c4d496-0c01-4a5c-acb2-dcaa4902a712 3912d5c47bc3457c50dbb271e692a568 { 'aliquot_tag': 'ALQ_f8709cd6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00555.RNA-Seq.R2_L004.T C3N-00555 LSCC RNA-Seq tumor CPT0068280009 170828_UNC31-K00269_0077_AHLF33BBXX_TTAGGC_S13_L004_R2_001.fastq.gz 4439030856 FASTQ R2_L004 unaligned CPTAC3 f7f1a551-b56e-4658-81ba-73c44413f456 7a92e6a807a2c28c37393640d3b14524 { 'aliquot_tag': 'ALQ_e9234a43', 'gdc_sample_type': 'Primary Tumor' } -C3N-00555.RNA-Seq.R2_L006.A C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTTGA_S24_L006_R2_001.fastq.gz 3525966528 FASTQ R2_L006 unaligned CPTAC3 ce2c7a38-9da9-4f62-8166-3a9ec658c8cd de2cb29528b73aa218d50224bf4ca5eb { 'aliquot_tag': 'ALQ_f8709cd6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00555.RNA-Seq.genomic.A.hg38 C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 cb5d0984-eedf-439b-9892-f5530355aa0c.rna_seq.genomic.gdc_realn.bam 7118429765 BAM genomic harmonized CPTAC3 41231211-df7d-47ce-be94-b5b3652aa1cb fcd764e7c68eb72fb0fe9c1c803b5e1b { 'aliquot_tag': 'ALQ_f8709cd6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00555.RNA-Seq.genomic.T.hg38 C3N-00555 LSCC RNA-Seq tumor CPT0068280009 d5fc1def-d651-4d9c-acbe-315e65ccd084.rna_seq.genomic.gdc_realn.bam 8891282302 BAM genomic harmonized CPTAC3 a60dce74-6cc3-4b1f-a09a-994b95ec1952 38f3fd2cc62dd951d2b11e2556961b77 { 'aliquot_tag': 'ALQ_e9234a43', 'gdc_sample_type': 'Primary Tumor' } +C3N-00555.RNA-Seq.R1_L004.T C3N-00555 LSCC RNA-Seq tumor CPT0068280009 170828_UNC31-K00269_0077_AHLF33BBXX_TTAGGC_S13_L004_R1_001.fastq.gz 4111280734 FASTQ R1_L004 unaligned CPTAC3 e4d8ed76-350f-43c7-bc82-a3dd416e97ca 4c32b0fe0469917bd62cc37c8c98423d { 'aliquot_tag': 'ALQ_e9234a43', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00555.RNA-Seq.R1_L006.A C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTTGA_S24_L006_R1_001.fastq.gz 3203664411 FASTQ R1_L006 unaligned CPTAC3 c6c4d496-0c01-4a5c-acb2-dcaa4902a712 3912d5c47bc3457c50dbb271e692a568 { 'aliquot_tag': 'ALQ_f8709cd6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00555.RNA-Seq.R2_L004.T C3N-00555 LSCC RNA-Seq tumor CPT0068280009 170828_UNC31-K00269_0077_AHLF33BBXX_TTAGGC_S13_L004_R2_001.fastq.gz 4439030856 FASTQ R2_L004 unaligned CPTAC3 f7f1a551-b56e-4658-81ba-73c44413f456 7a92e6a807a2c28c37393640d3b14524 { 'aliquot_tag': 'ALQ_e9234a43', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00555.RNA-Seq.R2_L006.A C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 180516_UNC32-K00270_0095_AHTY5LBBXX_ACTTGA_S24_L006_R2_001.fastq.gz 3525966528 FASTQ R2_L006 unaligned CPTAC3 ce2c7a38-9da9-4f62-8166-3a9ec658c8cd de2cb29528b73aa218d50224bf4ca5eb { 'aliquot_tag': 'ALQ_f8709cd6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-00555.RNA-Seq.transcriptome.A.hg38 C3N-00555 LSCC RNA-Seq tissue_normal CPT0068320006 cb5d0984-eedf-439b-9892-f5530355aa0c.rna_seq.transcriptome.gdc_realn.bam 8749340232 BAM transcriptome harmonized CPTAC3 f15a19bc-6d9a-4ed7-b861-07aa7968f446 bac00c33b6e05c4e8631280843563aaf { 'aliquot_tag': 'ALQ_f8709cd6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00555.RNA-Seq.transcriptome.T.hg38 C3N-00555 LSCC RNA-Seq tumor CPT0068280009 d5fc1def-d651-4d9c-acbe-315e65ccd084.rna_seq.transcriptome.gdc_realn.bam 12502618386 BAM transcriptome harmonized CPTAC3 78844a73-a982-4f20-aa8b-6ff91ada2a06 029d25cf7c3d12e9d974f1fe06c3eb79 { 'aliquot_tag': 'ALQ_e9234a43', 'gdc_sample_type': 'Primary Tumor' } C3N-00555.WGS.A C3N-00555 LSCC WGS tissue_normal CPT0068320009 CPT0068320009.WholeGenome.RP-1303.bam 52166961154 BAM aligned CPTAC3 8349e79b-b15d-4737-9db1-3e1cc4a363cb 30bc066d0730be9a22221a5f6fe914a3 { 'aliquot_tag': 'ALQ_68cf8147', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21641,11 +23412,11 @@ C3N-00556.miRNA-Seq.T.hg38 C3N-00556 LUAD miRNA-Seq tumor CPT0090700006 e304251e C3N-00556.RNA-Seq.chimeric.A.hg38 C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 dd468d21-4997-44f5-810b-f0b8d6583795.rna_seq.chimeric.gdc_realn.bam 76983738 BAM chimeric harmonized CPTAC3 448838e2-2805-4f6b-9c82-8d8e9dd2e513 7f04aa302d7deb46e9fab45c28658574 { 'aliquot_tag': 'ALQ_892e820b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00556.RNA-Seq.chimeric.T.hg38 C3N-00556 LUAD RNA-Seq tumor CPT0090700006 f25b5b0c-67fc-4f80-917f-fe07a9c0af88.rna_seq.chimeric.gdc_realn.bam 189455309 BAM chimeric harmonized CPTAC3 25ca107e-ed68-45e0-9b5b-2fd357bc8b6a 4f462e7a071fd497734fbcdc12839cc4 { 'aliquot_tag': 'ALQ_f3eed16b', 'gdc_sample_type': 'Primary Tumor' } C3N-00556.RNA-Seq.genomic.A.hg38 C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 dd468d21-4997-44f5-810b-f0b8d6583795.rna_seq.genomic.gdc_realn.bam 7581510794 BAM genomic harmonized CPTAC3 0f33d1ed-eaf0-413d-8c7c-f0b863f99cb7 9043584f70aeb5ace73eda73d0214105 { 'aliquot_tag': 'ALQ_892e820b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00556.RNA-Seq.genomic.T.hg38 C3N-00556 LUAD RNA-Seq tumor CPT0090700006 f25b5b0c-67fc-4f80-917f-fe07a9c0af88.rna_seq.genomic.gdc_realn.bam 9521617056 BAM genomic harmonized CPTAC3 591cbc12-14a0-4091-9323-0ebfb5a915bd 3258edd8ce1b94c98bc90222999fc011 { 'aliquot_tag': 'ALQ_f3eed16b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00556.RNA-Seq.R1_L004.A C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 171205_UNC32-K00270_0069_BHN2HGBBXX_CAGATC_S14_L004_R1_001.fastq.gz 3727621382 FASTQ R1_L004 unaligned CPTAC3 bb0080ab-f7a2-4cf2-ba90-f7572bee1ef0 4fc4216ed2b79ca690751e8018395e31 { 'aliquot_tag': 'ALQ_892e820b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00556.RNA-Seq.R1_L004.T C3N-00556 LUAD RNA-Seq tumor CPT0090700006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4275556766 FASTQ R1_L004 unaligned CPTAC3 be53b4b8-e3eb-41a4-86ef-2f8062932be9 90260db4febc28e0b30007004cd2bdc3 { 'aliquot_tag': 'ALQ_f3eed16b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00556.RNA-Seq.R2_L004.A C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 171205_UNC32-K00270_0069_BHN2HGBBXX_CAGATC_S14_L004_R2_001.fastq.gz 3981356048 FASTQ R2_L004 unaligned CPTAC3 6b241235-a041-45e9-a300-c68d3d1b8898 3cb27f40e0386deed8f1c4f1758d9007 { 'aliquot_tag': 'ALQ_892e820b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00556.RNA-Seq.R2_L004.T C3N-00556 LUAD RNA-Seq tumor CPT0090700006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4761788101 FASTQ R2_L004 unaligned CPTAC3 911a1ff5-72f1-4336-8d5a-99f5eaf37537 f5681da3403d3926e607e67cf6cc1247 { 'aliquot_tag': 'ALQ_f3eed16b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00556.RNA-Seq.genomic.T.hg38 C3N-00556 LUAD RNA-Seq tumor CPT0090700006 f25b5b0c-67fc-4f80-917f-fe07a9c0af88.rna_seq.genomic.gdc_realn.bam 9521617056 BAM genomic harmonized CPTAC3 1151bc78-8658-429d-8e61-3558e42ffa6a 3258edd8ce1b94c98bc90222999fc011 { 'aliquot_tag': 'ALQ_f3eed16b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00556.RNA-Seq.R1_L004.A C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 171205_UNC32-K00270_0069_BHN2HGBBXX_CAGATC_S14_L004_R1_001.fastq.gz 3727621382 FASTQ R1_L004 unaligned CPTAC3 bb0080ab-f7a2-4cf2-ba90-f7572bee1ef0 4fc4216ed2b79ca690751e8018395e31 { 'aliquot_tag': 'ALQ_892e820b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-00556.RNA-Seq.R1_L004.T C3N-00556 LUAD RNA-Seq tumor CPT0090700006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTGAT_S12_L004_R1_001.fastq.gz 4275556766 FASTQ R1_L004 unaligned CPTAC3 be53b4b8-e3eb-41a4-86ef-2f8062932be9 90260db4febc28e0b30007004cd2bdc3 { 'aliquot_tag': 'ALQ_f3eed16b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00556.RNA-Seq.R2_L004.A C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 171205_UNC32-K00270_0069_BHN2HGBBXX_CAGATC_S14_L004_R2_001.fastq.gz 3981356048 FASTQ R2_L004 unaligned CPTAC3 6b241235-a041-45e9-a300-c68d3d1b8898 3cb27f40e0386deed8f1c4f1758d9007 { 'aliquot_tag': 'ALQ_892e820b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-00556.RNA-Seq.R2_L004.T C3N-00556 LUAD RNA-Seq tumor CPT0090700006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTGAT_S12_L004_R2_001.fastq.gz 4761788101 FASTQ R2_L004 unaligned CPTAC3 911a1ff5-72f1-4336-8d5a-99f5eaf37537 f5681da3403d3926e607e67cf6cc1247 { 'aliquot_tag': 'ALQ_f3eed16b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-00556.RNA-Seq.transcriptome.A.hg38 C3N-00556 LUAD RNA-Seq tissue_normal CPT0090720006 dd468d21-4997-44f5-810b-f0b8d6583795.rna_seq.transcriptome.gdc_realn.bam 8464616100 BAM transcriptome harmonized CPTAC3 2a876d2c-2542-4f0b-bf2f-93c4bf97587e accc3f31eed55ca4cdadf67dab6d8fca { 'aliquot_tag': 'ALQ_892e820b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00556.RNA-Seq.transcriptome.T.hg38 C3N-00556 LUAD RNA-Seq tumor CPT0090700006 f25b5b0c-67fc-4f80-917f-fe07a9c0af88.rna_seq.transcriptome.gdc_realn.bam 11520685178 BAM transcriptome harmonized CPTAC3 a28d1f9b-cfde-4bff-b437-c9b9e0ea6896 e4bdbae05538e8a8607159b3bdba6754 { 'aliquot_tag': 'ALQ_f3eed16b', 'gdc_sample_type': 'Primary Tumor' } C3N-00556.WGS.A C3N-00556 LUAD WGS tissue_normal CPT0090720009 CPT0090720009.WholeGenome.RP-1303.bam 58317699130 BAM aligned CPTAC3 fb14a2ea-3eaa-496c-8bd6-18b2533783c2 4769b440741ca68685997626cdfd889a { 'aliquot_tag': 'ALQ_19919f9a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21670,12 +23441,12 @@ C3N-00559.miRNA-Seq.T C3N-00559 LUAD miRNA-Seq tumor CPT0068610006 181012_UNC32- C3N-00559.miRNA-Seq.T.hg38 C3N-00559 LUAD miRNA-Seq tumor CPT0068610006 7f2b8065-6a58-4035-986e-00388244d9c8_mirnaseq_gdc_realn.bam 261630983 BAM harmonized CPTAC3 cf519ce2-5fa2-48f5-9e00-b87f8e316d99 7527eb606eb429a788a8b08c1c8b269a { 'aliquot_tag': 'ALQ_ef1d77b5', 'gdc_sample_type': 'Primary Tumor' } C3N-00559.RNA-Seq.chimeric.A.hg38 C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 4758c927-7adb-4a73-a873-309098e81305.rna_seq.chimeric.gdc_realn.bam 119268643 BAM chimeric harmonized CPTAC3 25376980-45f8-42f9-8ec6-fc97481eb572 b1f926950e871bb24d89b288e08780e2 { 'aliquot_tag': 'ALQ_1a9dd175', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00559.RNA-Seq.chimeric.T.hg38 C3N-00559 LUAD RNA-Seq tumor CPT0068610006 ed2764ca-677f-48fa-ac44-e1adc1e677f3.rna_seq.chimeric.gdc_realn.bam 179623357 BAM chimeric harmonized CPTAC3 f59c8d4e-da8a-4c58-b864-d290b533975f 05aaed4ac7f88f46d1bbbfbaefc3c1e9 { 'aliquot_tag': 'ALQ_ef1d77b5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00559.RNA-Seq.genomic.A.hg38 C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 4758c927-7adb-4a73-a873-309098e81305.rna_seq.genomic.gdc_realn.bam 9022437638 BAM genomic harmonized CPTAC3 794f1167-7072-4033-bd72-ab29bb838c13 28aa5aa4573ea8fced852ad762af82f8 { 'aliquot_tag': 'ALQ_1a9dd175', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00559.RNA-Seq.genomic.T.hg38 C3N-00559 LUAD RNA-Seq tumor CPT0068610006 ed2764ca-677f-48fa-ac44-e1adc1e677f3.rna_seq.genomic.gdc_realn.bam 8214519587 BAM genomic harmonized CPTAC3 1908dd08-14b3-4971-893a-64bd22995177 df274e310881a9e89aac93bc32666af5 { 'aliquot_tag': 'ALQ_ef1d77b5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00559.RNA-Seq.R1_L007.A C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L007_R1_001.fastq.gz 4004706735 FASTQ R1_L007 unaligned CPTAC3 8e6188ee-81c8-435f-a71b-b8608e15a768 4a8ba3cf38d71121524c9b8e7c5fb7df { 'aliquot_tag': 'ALQ_1a9dd175', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00559.RNA-Seq.R1_L007.T C3N-00559 LUAD RNA-Seq tumor CPT0068610006 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTTCC_S22_L007_R1_001.fastq.gz 4053687904 FASTQ R1_L007 unaligned CPTAC3 35ac3e77-6860-42e8-a022-cb2889c74118 f25151a2d9a4fcbf9735da27a3c6b281 { 'aliquot_tag': 'ALQ_ef1d77b5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00559.RNA-Seq.R2_L007.A C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L007_R2_001.fastq.gz 4396700968 FASTQ R2_L007 unaligned CPTAC3 40f2783e-a257-4a4c-ac79-c0c4b885ad4e 6f344cf30bad924f122716377f3daa1c { 'aliquot_tag': 'ALQ_1a9dd175', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00559.RNA-Seq.R2_L007.T C3N-00559 LUAD RNA-Seq tumor CPT0068610006 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTTCC_S22_L007_R2_001.fastq.gz 4373524532 FASTQ R2_L007 unaligned CPTAC3 92fffc3f-b951-4bc5-acf4-dade2089fa7f 19cb370f4046a8e576c89e43b513797e { 'aliquot_tag': 'ALQ_ef1d77b5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00559.RNA-Seq.genomic.A.hg38 C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 4758c927-7adb-4a73-a873-309098e81305.rna_seq.genomic.gdc_realn.bam 9022437638 BAM genomic harmonized CPTAC3 f40ec376-0bf3-4500-969f-c2485375a5f8 28aa5aa4573ea8fced852ad762af82f8 { 'aliquot_tag': 'ALQ_1a9dd175', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00559.RNA-Seq.genomic.T.hg38 C3N-00559 LUAD RNA-Seq tumor CPT0068610006 ed2764ca-677f-48fa-ac44-e1adc1e677f3.rna_seq.genomic.gdc_realn.bam 8214519587 BAM genomic harmonized CPTAC3 7e10c912-2d98-4dec-95e6-2f2d8ac44f42 df274e310881a9e89aac93bc32666af5 { 'aliquot_tag': 'ALQ_ef1d77b5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00559.RNA-Seq.R1_L007.A C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L007_R1_001.fastq.gz 4004706735 FASTQ R1_L007 unaligned CPTAC3 8e6188ee-81c8-435f-a71b-b8608e15a768 4a8ba3cf38d71121524c9b8e7c5fb7df { 'aliquot_tag': 'ALQ_1a9dd175', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-00559.RNA-Seq.R1_L007.T C3N-00559 LUAD RNA-Seq tumor CPT0068610006 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTTCC_S22_L007_R1_001.fastq.gz 4053687904 FASTQ R1_L007 unaligned CPTAC3 35ac3e77-6860-42e8-a022-cb2889c74118 f25151a2d9a4fcbf9735da27a3c6b281 { 'aliquot_tag': 'ALQ_ef1d77b5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00559.RNA-Seq.R2_L007.A C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 171215_UNC32-K00270_0073_BHN3NFBBXX_GAGTGG_S1_L007_R2_001.fastq.gz 4396700968 FASTQ R2_L007 unaligned CPTAC3 40f2783e-a257-4a4c-ac79-c0c4b885ad4e 6f344cf30bad924f122716377f3daa1c { 'aliquot_tag': 'ALQ_1a9dd175', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-00559.RNA-Seq.R2_L007.T C3N-00559 LUAD RNA-Seq tumor CPT0068610006 170905_UNC31-K00269_0079_AHLCF7BBXX_AGTTCC_S22_L007_R2_001.fastq.gz 4373524532 FASTQ R2_L007 unaligned CPTAC3 92fffc3f-b951-4bc5-acf4-dade2089fa7f 19cb370f4046a8e576c89e43b513797e { 'aliquot_tag': 'ALQ_ef1d77b5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00559.RNA-Seq.transcriptome.A.hg38 C3N-00559 LUAD RNA-Seq tissue_normal CPT0068650006 4758c927-7adb-4a73-a873-309098e81305.rna_seq.transcriptome.gdc_realn.bam 8899432370 BAM transcriptome harmonized CPTAC3 98c384b0-1a03-46e2-81b1-ebf61fa812c1 77720e0cf4ca98ae0b33e3bf4a3a42d1 { 'aliquot_tag': 'ALQ_1a9dd175', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00559.RNA-Seq.transcriptome.T.hg38 C3N-00559 LUAD RNA-Seq tumor CPT0068610006 ed2764ca-677f-48fa-ac44-e1adc1e677f3.rna_seq.transcriptome.gdc_realn.bam 9187519192 BAM transcriptome harmonized CPTAC3 87fe33c2-8c74-4fff-8e89-d979fb286f1d ee60ee8f05a67963fbf7b5e4a53d1a1e { 'aliquot_tag': 'ALQ_ef1d77b5', 'gdc_sample_type': 'Primary Tumor' } C3N-00559.WGS.A C3N-00559 LUAD WGS tissue_normal CPT0068650009 CPT0068650009.WholeGenome.RP-1303.bam 59112722658 BAM aligned CPTAC3 50e50514-c147-48e7-afea-64a98bbee984 3d8d38f56d904f02d8fe416cadb97b1f { 'aliquot_tag': 'ALQ_8a22cce4', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21700,12 +23471,12 @@ C3N-00560.miRNA-Seq.T C3N-00560 LUAD miRNA-Seq tumor CPT0068800009 181119_UNC31- C3N-00560.miRNA-Seq.T.hg38 C3N-00560 LUAD miRNA-Seq tumor CPT0068800009 7918ebab-4d6b-4fc2-a19e-4292608ea22a_mirnaseq_gdc_realn.bam 239298777 BAM harmonized CPTAC3 fc44dd4c-d6ee-46e1-af9e-cb38bc9890a6 56c45decf999e195bbcc4990530900ae { 'aliquot_tag': 'ALQ_78c822e4', 'gdc_sample_type': 'Primary Tumor' } C3N-00560.RNA-Seq.chimeric.A.hg38 C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 b88f8046-e8be-4920-92ca-5b02286af0de.rna_seq.chimeric.gdc_realn.bam 157084628 BAM chimeric harmonized CPTAC3 e9db2c42-b5fb-47e2-b60f-c1d2bbc0adbd 92714b1db185040d69bb21a083da0bc5 { 'aliquot_tag': 'ALQ_afd745a5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00560.RNA-Seq.chimeric.T.hg38 C3N-00560 LUAD RNA-Seq tumor CPT0068800009 02fc68eb-0722-4231-b8c5-62df635234c2.rna_seq.chimeric.gdc_realn.bam 27472325 BAM chimeric harmonized CPTAC3 87bc9b84-8826-4c41-a6fb-63a017552e44 7f1d58f357aeb41f1accc10df82f857e { 'aliquot_tag': 'ALQ_78c822e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-00560.RNA-Seq.genomic.A.hg38 C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 b88f8046-e8be-4920-92ca-5b02286af0de.rna_seq.genomic.gdc_realn.bam 8765917970 BAM genomic harmonized CPTAC3 19f95cd6-aa9b-4afc-ba86-a34fe26a7411 b7dc10b781d480cf01f5dc473de55e00 { 'aliquot_tag': 'ALQ_afd745a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00560.RNA-Seq.genomic.T.hg38 C3N-00560 LUAD RNA-Seq tumor CPT0068800009 02fc68eb-0722-4231-b8c5-62df635234c2.rna_seq.genomic.gdc_realn.bam 7636550362 BAM genomic harmonized CPTAC3 ca08547b-0783-4bbc-87dc-20c80e573d5c 6999c545d551142457d4404c39d42b28 { 'aliquot_tag': 'ALQ_78c822e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-00560.RNA-Seq.R1_L004.T C3N-00560 LUAD RNA-Seq tumor CPT0068800009 170828_UNC31-K00269_0077_AHLF33BBXX_TGACCA_S16_L004_R1_001.fastq.gz 3766620353 FASTQ R1_L004 unaligned CPTAC3 46bd0f61-6336-4718-87c9-4321fca9d1c7 5b766036e12d20568365d46d377e5491 { 'aliquot_tag': 'ALQ_78c822e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-00560.RNA-Seq.R1_L007.A C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L007_R1_001.fastq.gz 4108649064 FASTQ R1_L007 unaligned CPTAC3 bb38f2f8-49b4-452c-a46c-1225fa3c06bc a6ad770a1a8085b6dbfee41049feb71a { 'aliquot_tag': 'ALQ_afd745a5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00560.RNA-Seq.R2_L004.T C3N-00560 LUAD RNA-Seq tumor CPT0068800009 170828_UNC31-K00269_0077_AHLF33BBXX_TGACCA_S16_L004_R2_001.fastq.gz 3962085780 FASTQ R2_L004 unaligned CPTAC3 f9f777c8-4adc-4d33-a1af-586195c51863 367502574bb9e82528f100bacedb682c { 'aliquot_tag': 'ALQ_78c822e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-00560.RNA-Seq.R2_L007.A C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L007_R2_001.fastq.gz 4490060201 FASTQ R2_L007 unaligned CPTAC3 3702c568-757a-4c5f-824d-60f359a3e47a 72b27fe82536d822f361a689a541ee23 { 'aliquot_tag': 'ALQ_afd745a5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00560.RNA-Seq.genomic.A.hg38 C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 b88f8046-e8be-4920-92ca-5b02286af0de.rna_seq.genomic.gdc_realn.bam 8765917970 BAM genomic harmonized CPTAC3 1c1b0f0d-d739-4d51-85a7-85aa3301bb8d b7dc10b781d480cf01f5dc473de55e00 { 'aliquot_tag': 'ALQ_afd745a5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00560.RNA-Seq.genomic.T.hg38 C3N-00560 LUAD RNA-Seq tumor CPT0068800009 02fc68eb-0722-4231-b8c5-62df635234c2.rna_seq.genomic.gdc_realn.bam 7636550362 BAM genomic harmonized CPTAC3 877414cc-b7f4-4802-a5c7-4d966ad11471 6999c545d551142457d4404c39d42b28 { 'aliquot_tag': 'ALQ_78c822e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-00560.RNA-Seq.R1_L004.T C3N-00560 LUAD RNA-Seq tumor CPT0068800009 170828_UNC31-K00269_0077_AHLF33BBXX_TGACCA_S16_L004_R1_001.fastq.gz 3766620353 FASTQ R1_L004 unaligned CPTAC3 46bd0f61-6336-4718-87c9-4321fca9d1c7 5b766036e12d20568365d46d377e5491 { 'aliquot_tag': 'ALQ_78c822e4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00560.RNA-Seq.R1_L007.A C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L007_R1_001.fastq.gz 4108649064 FASTQ R1_L007 unaligned CPTAC3 bb38f2f8-49b4-452c-a46c-1225fa3c06bc a6ad770a1a8085b6dbfee41049feb71a { 'aliquot_tag': 'ALQ_afd745a5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-00560.RNA-Seq.R2_L004.T C3N-00560 LUAD RNA-Seq tumor CPT0068800009 170828_UNC31-K00269_0077_AHLF33BBXX_TGACCA_S16_L004_R2_001.fastq.gz 3962085780 FASTQ R2_L004 unaligned CPTAC3 f9f777c8-4adc-4d33-a1af-586195c51863 367502574bb9e82528f100bacedb682c { 'aliquot_tag': 'ALQ_78c822e4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00560.RNA-Seq.R2_L007.A C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L007_R2_001.fastq.gz 4490060201 FASTQ R2_L007 unaligned CPTAC3 3702c568-757a-4c5f-824d-60f359a3e47a 72b27fe82536d822f361a689a541ee23 { 'aliquot_tag': 'ALQ_afd745a5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-00560.RNA-Seq.transcriptome.A.hg38 C3N-00560 LUAD RNA-Seq tissue_normal CPT0068830006 b88f8046-e8be-4920-92ca-5b02286af0de.rna_seq.transcriptome.gdc_realn.bam 10139949654 BAM transcriptome harmonized CPTAC3 ec96ca67-c315-449a-b408-1fdf1ff3a8f2 5ef3fa029409825eb9c2cb91e388db93 { 'aliquot_tag': 'ALQ_afd745a5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00560.RNA-Seq.transcriptome.T.hg38 C3N-00560 LUAD RNA-Seq tumor CPT0068800009 02fc68eb-0722-4231-b8c5-62df635234c2.rna_seq.transcriptome.gdc_realn.bam 10692603673 BAM transcriptome harmonized CPTAC3 e152add2-e9a0-494d-b7ea-82c460e6c3d7 19137fcd71d7c330b2585f207d94fc91 { 'aliquot_tag': 'ALQ_78c822e4', 'gdc_sample_type': 'Primary Tumor' } C3N-00560.Targeted.T C3N-00560 LUAD Targeted Sequencing tumor CPT0068800006 CPT0068800006.CustomSelection.RP-1303.PDO-18786.bam 4019311723 BAM aligned CPTAC3 2c5f8866-5e5f-4715-9ea9-9bc7c611b436 506a39fc58756128b7977bb2e230de8e { 'aliquot_tag': 'ALQ_e8773f75', 'gdc_sample_type': 'Primary Tumor' } @@ -21732,12 +23503,12 @@ C3N-00572.miRNA-Seq.T C3N-00572 LUAD miRNA-Seq tumor CPT0015410006 181113_UNC31- C3N-00572.miRNA-Seq.T.hg38 C3N-00572 LUAD miRNA-Seq tumor CPT0015410006 a8b1dd01-2e94-4b84-a9c2-2ad495f2ecf4_mirnaseq_gdc_realn.bam 242021283 BAM harmonized CPTAC3 2e8b8488-9cb8-4e0b-8563-3f539f79ef41 8e961e3d280305872653fa9d64faf5f6 { 'aliquot_tag': 'ALQ_c9c7be67', 'gdc_sample_type': 'Primary Tumor' } C3N-00572.RNA-Seq.chimeric.A.hg38 C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 2e3a83f9-1007-4275-a9f8-29b4312292d8.rna_seq.chimeric.gdc_realn.bam 37603214 BAM chimeric harmonized CPTAC3 8bc2f3db-0009-4cfd-ba13-e5f162472e28 c26adf7de39ec3e4191b8564e6c610d2 { 'aliquot_tag': 'ALQ_8e67c4b7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00572.RNA-Seq.chimeric.T.hg38 C3N-00572 LUAD RNA-Seq tumor CPT0015410006 8215e3ed-ca48-4f0a-8dea-3a10bfef0900.rna_seq.chimeric.gdc_realn.bam 52234049 BAM chimeric harmonized CPTAC3 74c870b4-0a47-488b-baae-6339ff118208 c25791462e140779a52df7e6033f00df { 'aliquot_tag': 'ALQ_c9c7be67', 'gdc_sample_type': 'Primary Tumor' } -C3N-00572.RNA-Seq.genomic.A.hg38 C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 2e3a83f9-1007-4275-a9f8-29b4312292d8.rna_seq.genomic.gdc_realn.bam 5862977929 BAM genomic harmonized CPTAC3 56066a12-5f60-442b-9abe-3031d39b38c4 c18a9c3e0e31b0c1114f973cb3659a7c { 'aliquot_tag': 'ALQ_8e67c4b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00572.RNA-Seq.genomic.T.hg38 C3N-00572 LUAD RNA-Seq tumor CPT0015410006 8215e3ed-ca48-4f0a-8dea-3a10bfef0900.rna_seq.genomic.gdc_realn.bam 8333243935 BAM genomic harmonized CPTAC3 62f66dca-48a6-4626-9991-ac4dbc15fd1f 5865b03edf0243a84b1e57bac7a4674a { 'aliquot_tag': 'ALQ_c9c7be67', 'gdc_sample_type': 'Primary Tumor' } -C3N-00572.RNA-Seq.R1_L001.T C3N-00572 LUAD RNA-Seq tumor CPT0015410006 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L001_R1_001.fastq.gz 3756268296 FASTQ R1_L001 unaligned CPTAC3 2ef79d70-28f8-4ec8-bbff-4ba04ac34831 5ec0f27cf71d7856a536b67f89575c4f { 'aliquot_tag': 'ALQ_c9c7be67', 'gdc_sample_type': 'Primary Tumor' } -C3N-00572.RNA-Seq.R1_L006.A C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 171215_UNC32-K00270_0072_AHN3THBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3050852055 FASTQ R1_L006 unaligned CPTAC3 59abf2ce-a0c0-4e7d-a98c-a08a1b9943cc 39f9aa0b02e056f52b51dc1adf7c957d { 'aliquot_tag': 'ALQ_8e67c4b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00572.RNA-Seq.R2_L001.T C3N-00572 LUAD RNA-Seq tumor CPT0015410006 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L001_R2_001.fastq.gz 4279080356 FASTQ R2_L001 unaligned CPTAC3 57f41a92-2a2b-4673-b1d5-3f2a298dd09f a19b6372a09c815d56da41dc9a07bbf4 { 'aliquot_tag': 'ALQ_c9c7be67', 'gdc_sample_type': 'Primary Tumor' } -C3N-00572.RNA-Seq.R2_L006.A C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 171215_UNC32-K00270_0072_AHN3THBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3236795328 FASTQ R2_L006 unaligned CPTAC3 6ea15efc-a8d7-4099-922d-fc62d572aeab 7531f65326c093448c8f6ea972b4e464 { 'aliquot_tag': 'ALQ_8e67c4b7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00572.RNA-Seq.genomic.A.hg38 C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 2e3a83f9-1007-4275-a9f8-29b4312292d8.rna_seq.genomic.gdc_realn.bam 5862977929 BAM genomic harmonized CPTAC3 e70b66ef-c7a5-47e5-940c-230d917ba77b c18a9c3e0e31b0c1114f973cb3659a7c { 'aliquot_tag': 'ALQ_8e67c4b7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00572.RNA-Seq.genomic.T.hg38 C3N-00572 LUAD RNA-Seq tumor CPT0015410006 8215e3ed-ca48-4f0a-8dea-3a10bfef0900.rna_seq.genomic.gdc_realn.bam 8333243935 BAM genomic harmonized CPTAC3 b4a1adbd-50ac-44b6-b8af-d361486715a3 5865b03edf0243a84b1e57bac7a4674a { 'aliquot_tag': 'ALQ_c9c7be67', 'gdc_sample_type': 'Primary Tumor' } +C3N-00572.RNA-Seq.R1_L001.T C3N-00572 LUAD RNA-Seq tumor CPT0015410006 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L001_R1_001.fastq.gz 3756268296 FASTQ R1_L001 unaligned CPTAC3 2ef79d70-28f8-4ec8-bbff-4ba04ac34831 5ec0f27cf71d7856a536b67f89575c4f { 'aliquot_tag': 'ALQ_c9c7be67', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00572.RNA-Seq.R1_L006.A C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 171215_UNC32-K00270_0072_AHN3THBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3050852055 FASTQ R1_L006 unaligned CPTAC3 59abf2ce-a0c0-4e7d-a98c-a08a1b9943cc 39f9aa0b02e056f52b51dc1adf7c957d { 'aliquot_tag': 'ALQ_8e67c4b7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00572.RNA-Seq.R2_L001.T C3N-00572 LUAD RNA-Seq tumor CPT0015410006 170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L001_R2_001.fastq.gz 4279080356 FASTQ R2_L001 unaligned CPTAC3 57f41a92-2a2b-4673-b1d5-3f2a298dd09f a19b6372a09c815d56da41dc9a07bbf4 { 'aliquot_tag': 'ALQ_c9c7be67', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00572.RNA-Seq.R2_L006.A C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 171215_UNC32-K00270_0072_AHN3THBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3236795328 FASTQ R2_L006 unaligned CPTAC3 6ea15efc-a8d7-4099-922d-fc62d572aeab 7531f65326c093448c8f6ea972b4e464 { 'aliquot_tag': 'ALQ_8e67c4b7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-00572.RNA-Seq.transcriptome.A.hg38 C3N-00572 LUAD RNA-Seq tissue_normal CPT0015420006 2e3a83f9-1007-4275-a9f8-29b4312292d8.rna_seq.transcriptome.gdc_realn.bam 7262801407 BAM transcriptome harmonized CPTAC3 ab17b5a6-4fd7-4c95-be66-c68d36fae82c 6dde7e793d7fb264cbf136b1367213f8 { 'aliquot_tag': 'ALQ_8e67c4b7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00572.RNA-Seq.transcriptome.T.hg38 C3N-00572 LUAD RNA-Seq tumor CPT0015410006 8215e3ed-ca48-4f0a-8dea-3a10bfef0900.rna_seq.transcriptome.gdc_realn.bam 12930714956 BAM transcriptome harmonized CPTAC3 dcb0d079-ea4a-4926-8bea-e67156166e54 09f54a5c8f1f482eb6bbcd6d2e03dcc4 { 'aliquot_tag': 'ALQ_c9c7be67', 'gdc_sample_type': 'Primary Tumor' } C3N-00572.WGS.A C3N-00572 LUAD WGS tissue_normal CPT0015420009 CPT0015420009.WholeGenome.RP-1303.bam 59327386080 BAM aligned CPTAC3 536c12e1-44a2-4ed2-b81d-2a9fab6202d7 bd43c5c2ff4204da8315a9f6ce9324af { 'aliquot_tag': 'ALQ_1ed8d926', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21755,9 +23526,9 @@ C3N-00572.WXS.T.hg38 C3N-00572 LUAD WXS tumor CPT0015410009 16e085ef-aa13-4d9e-a C3N-00573.DUP_135ba711.miRNA-Seq.T C3N-00573 CCRCC miRNA-Seq tumor CPT0068980006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATGGC_S27_L002_R1_001.unaln.bam 206638144 BAM unaligned CPTAC3 626dbb1b-5aaf-46c9-91c8-a87e4bf850f8 07a9e5a6b02d4f18a01170ceb7029fc0 { 'aliquot_tag': 'DUP_135ba711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_135ba711.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0068980006 873e34c6-3584-4258-9bc6-fbef1657324c_mirnaseq_gdc_realn.bam 231259961 BAM harmonized CPTAC3 270838b9-bdd5-4567-aa9b-3a0318ba1be6 0bd20ac87c91fff83f5cb132591433c0 { 'aliquot_tag': 'DUP_135ba711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_135ba711.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 3e08df7c-f993-404b-a3c7-9f18a46520d8.rna_seq.chimeric.gdc_realn.bam 41687723 BAM chimeric harmonized CPTAC3 dda74de3-85b5-4137-9744-d87531668b2a b9b3d7feec9767c7d2b41c5d09e2aff2 { 'aliquot_tag': 'DUP_135ba711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00573.DUP_135ba711.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 3e08df7c-f993-404b-a3c7-9f18a46520d8.rna_seq.genomic.gdc_realn.bam 9541701012 BAM genomic harmonized CPTAC3 d74bafdd-0cc1-4baa-9ff2-f787b7cb7f4b c6550108dd0697a36276bea82ab22b6d { 'aliquot_tag': 'DUP_135ba711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00573.DUP_135ba711.RNA-Seq.R1_L007.T C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 200519_UNC31-K00269_0280_BHHKGNBBXY_GGTCACGA-GTATTATG_S27_L007_R1_001.fastq.gz 4369383350 FASTQ R1_L007 unaligned CPTAC3 ae9995f9-517f-4e35-9d16-22e57745920e 8ce0dcd08275a0be7453e48a9d9a7e0b { 'aliquot_tag': 'DUP_135ba711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00573.DUP_135ba711.RNA-Seq.R2_L007.T C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 200519_UNC31-K00269_0280_BHHKGNBBXY_GGTCACGA-GTATTATG_S27_L007_R2_001.fastq.gz 5154277956 FASTQ R2_L007 unaligned CPTAC3 b5afe562-acc3-4969-938e-993a2c39e70f 75d81a130e01b2fdc145432669fa9572 { 'aliquot_tag': 'DUP_135ba711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00573.DUP_135ba711.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 3e08df7c-f993-404b-a3c7-9f18a46520d8.rna_seq.genomic.gdc_realn.bam 9541701012 BAM genomic harmonized CPTAC3 f9451dcb-6572-4aef-8a0d-7dc6fd7628dc c6550108dd0697a36276bea82ab22b6d { 'aliquot_tag': 'DUP_135ba711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00573.DUP_135ba711.RNA-Seq.R1_L007.T C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 200519_UNC31-K00269_0280_BHHKGNBBXY_GGTCACGA-GTATTATG_S27_L007_R1_001.fastq.gz 4369383350 FASTQ R1_L007 unaligned CPTAC3 ae9995f9-517f-4e35-9d16-22e57745920e 8ce0dcd08275a0be7453e48a9d9a7e0b { 'aliquot_tag': 'DUP_135ba711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3N-00573.DUP_135ba711.RNA-Seq.R2_L007.T C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 200519_UNC31-K00269_0280_BHHKGNBBXY_GGTCACGA-GTATTATG_S27_L007_R2_001.fastq.gz 5154277956 FASTQ R2_L007 unaligned CPTAC3 b5afe562-acc3-4969-938e-993a2c39e70f 75d81a130e01b2fdc145432669fa9572 { 'aliquot_tag': 'DUP_135ba711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3N-00573.DUP_135ba711.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068980006 3e08df7c-f993-404b-a3c7-9f18a46520d8.rna_seq.transcriptome.gdc_realn.bam 13241613661 BAM transcriptome harmonized CPTAC3 a9f13c80-3b8a-4c46-8cf7-516faac4e05c 889203a63ecc9f6c5ba4c2bafad9c5e5 { 'aliquot_tag': 'DUP_135ba711', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_1b42d51.MethArray.Green.T C3N-00573 CCRCC Methylation Array tumor CPT0068970009 204367490061_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 376be524-153c-4c0b-bdc3-a0acc33918b6 8702fc3e3a6b1b45757ccb9b2e6237a1 { 'aliquot_tag': 'DUP_1b42d51', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_1b42d51.MethArray.Red.T C3N-00573 CCRCC Methylation Array tumor CPT0068970009 204367490061_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 d16988d3-1431-433e-bd93-b7119ed08b38 4185f2906b64405c8e93e8ad6903ae00 { 'aliquot_tag': 'DUP_1b42d51', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -21769,8 +23540,8 @@ C3N-00573.DUP_2e3b8ea1.miRNA-Seq.T C3N-00573 CCRCC miRNA-Seq tumor CPT0068990006 C3N-00573.DUP_2e3b8ea1.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0068990006 d49dc8bd-4f80-4ee3-8a15-2cc89382a49b_mirnaseq_gdc_realn.bam 420463346 BAM harmonized CPTAC3 f2c052c2-dc36-4a34-8e3a-2ee01a7c8535 2d991d5a67bc49245dfae56370428962 { 'aliquot_tag': 'DUP_2e3b8ea1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_2e3b8ea1.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 765b2b7c-4365-4998-97e6-24da6b76bc51.rna_seq.chimeric.gdc_realn.bam 44668126 BAM chimeric harmonized CPTAC3 cfaf5271-6d19-47ea-b51c-eff7d4c40cc9 dfa5b935473ae8cc2d25475eb4c8c1b7 { 'aliquot_tag': 'DUP_2e3b8ea1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_2e3b8ea1.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 765b2b7c-4365-4998-97e6-24da6b76bc51.rna_seq.genomic.gdc_realn.bam 7807691168 BAM genomic harmonized CPTAC3 ad06f32a-af5c-4642-84f1-57594abbb5fa 65445ad0feeafda88e507d8b72cbbd2b { 'aliquot_tag': 'DUP_2e3b8ea1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00573.DUP_2e3b8ea1.RNA-Seq.R1_L007.T C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTGCTTCC-GATAGATC_S26_L007_R1_001.fastq.gz 3516400254 FASTQ R1_L007 unaligned CPTAC3 f168df71-22e8-4e93-b119-db33288bca15 2ffe51167c21f3376fa1cdc9e50b4ea3 { 'aliquot_tag': 'DUP_2e3b8ea1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00573.DUP_2e3b8ea1.RNA-Seq.R2_L007.T C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTGCTTCC-GATAGATC_S26_L007_R2_001.fastq.gz 4046510456 FASTQ R2_L007 unaligned CPTAC3 acaeeb63-695e-4f7d-81a7-8bd834514232 b2dd6cc7e0a099d74a0e30174a28006e { 'aliquot_tag': 'DUP_2e3b8ea1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00573.DUP_2e3b8ea1.RNA-Seq.R1_L007.T C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTGCTTCC-GATAGATC_S26_L007_R1_001.fastq.gz 3516400254 FASTQ R1_L007 unaligned CPTAC3 f168df71-22e8-4e93-b119-db33288bca15 2ffe51167c21f3376fa1cdc9e50b4ea3 { 'aliquot_tag': 'DUP_2e3b8ea1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3N-00573.DUP_2e3b8ea1.RNA-Seq.R2_L007.T C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 200519_UNC31-K00269_0280_BHHKGNBBXY_CTGCTTCC-GATAGATC_S26_L007_R2_001.fastq.gz 4046510456 FASTQ R2_L007 unaligned CPTAC3 acaeeb63-695e-4f7d-81a7-8bd834514232 b2dd6cc7e0a099d74a0e30174a28006e { 'aliquot_tag': 'DUP_2e3b8ea1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3N-00573.DUP_2e3b8ea1.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068990006 765b2b7c-4365-4998-97e6-24da6b76bc51.rna_seq.transcriptome.gdc_realn.bam 10144924619 BAM transcriptome harmonized CPTAC3 ff003744-94e3-4cf5-8e55-dc56cb2214d9 9281ba8d27aa1a55477a0878222e0391 { 'aliquot_tag': 'DUP_2e3b8ea1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_83e4ba80.MethArray.Green.T C3N-00573 CCRCC Methylation Array tumor CPT0068980009 204372030090_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 13009711-db7e-46d9-a510-41fdad6b335c 9a6bcc2f9c16a836b2d7134c7448b50a { 'aliquot_tag': 'DUP_83e4ba80', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_83e4ba80.MethArray.Red.T C3N-00573 CCRCC Methylation Array tumor CPT0068980009 204372030090_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 c6009b48-a095-4bb9-a8eb-81611d337c48 e2eb21e72e1f6700beef26ece36f11fa { 'aliquot_tag': 'DUP_83e4ba80', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -21782,8 +23553,8 @@ C3N-00573.DUP_910b30c0.miRNA-Seq.T C3N-00573 CCRCC miRNA-Seq tumor CPT0068970006 C3N-00573.DUP_910b30c0.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0068970006 fb1eab31-0fb2-4b7c-8cb1-adc25e1f9a5a_mirnaseq_gdc_realn.bam 243959981 BAM harmonized CPTAC3 a20a845d-e264-4de7-963b-75c1dd397bf6 4367511abc4794cfc87b8e8b1f22e73f { 'aliquot_tag': 'DUP_910b30c0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_910b30c0.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 0d3d0a80-dac4-4db3-930a-f420e62b5693.rna_seq.chimeric.gdc_realn.bam 238298314 BAM chimeric harmonized CPTAC3 eeb7d8cf-caed-44a4-b545-e4c23be8b2aa dfaeaa7fe048a1d5ef7debc5c13bc968 { 'aliquot_tag': 'DUP_910b30c0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_910b30c0.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 0d3d0a80-dac4-4db3-930a-f420e62b5693.rna_seq.genomic.gdc_realn.bam 8002486750 BAM genomic harmonized CPTAC3 54cb83c4-9788-470a-9c1e-b47f068ac22c 3e56ff811321c856a7a48a6cf4f9c34f { 'aliquot_tag': 'DUP_910b30c0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00573.DUP_910b30c0.RNA-Seq.R1_L005.T C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 200518_UNC32-K00270_0247_AHH573BBXY_CAAGCTAG-ACATAGCG_S33_L005_R1_001.fastq.gz 3596352020 FASTQ R1_L005 unaligned CPTAC3 b956ad15-1015-4bcb-8826-06e134175ba8 d64435c8dc4c8358b458b2296fa09c9d { 'aliquot_tag': 'DUP_910b30c0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00573.DUP_910b30c0.RNA-Seq.R2_L005.T C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 200518_UNC32-K00270_0247_AHH573BBXY_CAAGCTAG-ACATAGCG_S33_L005_R2_001.fastq.gz 4295270762 FASTQ R2_L005 unaligned CPTAC3 44682b18-e494-476f-b1fa-4e047c4abb0a b2c512114bf73f264707288e38e101c4 { 'aliquot_tag': 'DUP_910b30c0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00573.DUP_910b30c0.RNA-Seq.R1_L005.T C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 200518_UNC32-K00270_0247_AHH573BBXY_CAAGCTAG-ACATAGCG_S33_L005_R1_001.fastq.gz 3596352020 FASTQ R1_L005 unaligned CPTAC3 b956ad15-1015-4bcb-8826-06e134175ba8 d64435c8dc4c8358b458b2296fa09c9d { 'aliquot_tag': 'DUP_910b30c0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3N-00573.DUP_910b30c0.RNA-Seq.R2_L005.T C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 200518_UNC32-K00270_0247_AHH573BBXY_CAAGCTAG-ACATAGCG_S33_L005_R2_001.fastq.gz 4295270762 FASTQ R2_L005 unaligned CPTAC3 44682b18-e494-476f-b1fa-4e047c4abb0a b2c512114bf73f264707288e38e101c4 { 'aliquot_tag': 'DUP_910b30c0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3N-00573.DUP_910b30c0.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0068970006 0d3d0a80-dac4-4db3-930a-f420e62b5693.rna_seq.transcriptome.gdc_realn.bam 10612314019 BAM transcriptome harmonized CPTAC3 d8b4ac5b-0060-4bb0-a7e6-8c5bce0eb8c0 25ce7d89fcf9cd63caeae6ec096e956c { 'aliquot_tag': 'DUP_910b30c0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_be849330.MethArray.Green.T C3N-00573 CCRCC Methylation Array tumor CPT0068990009 204372030106_R03C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7afc4f3b-2f09-427b-808c-66d179518130 7a9d2a7ea48cc89653a32384bb4cbf93 { 'aliquot_tag': 'DUP_be849330', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00573.DUP_be849330.MethArray.Red.T C3N-00573 CCRCC Methylation Array tumor CPT0068990009 204372030106_R03C01_Red.idat 13677885 IDAT Red NA CPTAC3 2d65e679-49f8-4a55-97ac-338a4b1a0abd 64ec3c22670c15c2c7cc4f6d7086ca04 { 'aliquot_tag': 'DUP_be849330', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -21801,12 +23572,12 @@ C3N-00573.miRNA-Seq.T C3N-00573 CCRCC miRNA-Seq tumor CPT0069000009 181108_UNC31 C3N-00573.miRNA-Seq.T.hg38 C3N-00573 CCRCC miRNA-Seq tumor CPT0069000009 a9123e41-4f53-4407-8322-d4b30c66f144_mirnaseq_gdc_realn.bam 249247311 BAM harmonized CPTAC3 0e881d6c-4a59-4ad8-a17d-ce393bfddcce 0a4d07a6f6246fd15742b951dbcba123 { 'aliquot_tag': 'ALQ_32ecab3d', 'gdc_sample_type': 'Primary Tumor' } C3N-00573.RNA-Seq.chimeric.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 f9969e12-562a-4ea6-bef3-aec977e22e21.rna_seq.chimeric.gdc_realn.bam 43942371 BAM chimeric harmonized CPTAC3 8e189728-6166-4584-bb07-fd9161b99405 dd132ad91bf784311cec57ac71a16168 { 'aliquot_tag': 'ALQ_9f339f1c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00573.RNA-Seq.chimeric.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 2b5ce2fd-96cf-41ce-89b6-52902577d916.rna_seq.chimeric.gdc_realn.bam 33164121 BAM chimeric harmonized CPTAC3 349d4e5d-996e-4655-beef-dddb8c61699a efe23bf0a100b6d7f14f863a4b8a208d { 'aliquot_tag': 'ALQ_32ecab3d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00573.RNA-Seq.genomic.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 f9969e12-562a-4ea6-bef3-aec977e22e21.rna_seq.genomic.gdc_realn.bam 7465468761 BAM genomic harmonized CPTAC3 f7bc153a-4937-4638-a75b-eddefb50b1e1 0138b474b740e3bc606faea34cf2b619 { 'aliquot_tag': 'ALQ_9f339f1c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00573.RNA-Seq.genomic.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 f9969e12-562a-4ea6-bef3-aec977e22e21.rna_seq.genomic.gdc_realn.bam 7465468761 BAM genomic harmonized CPTAC3 4e104baa-f4a3-4f9a-b8b5-1f86e19f8bf9 0138b474b740e3bc606faea34cf2b619 { 'aliquot_tag': 'ALQ_9f339f1c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00573.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 2b5ce2fd-96cf-41ce-89b6-52902577d916.rna_seq.genomic.gdc_realn.bam 7926788094 BAM genomic harmonized CPTAC3 2a452ecd-f0f5-4f14-8e98-481535b87a02 e4da0b716de71b24b0dd886d106862a9 { 'aliquot_tag': 'ALQ_32ecab3d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00573.RNA-Seq.R1_L003.T C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 170828_UNC31-K00269_0077_AHLF33BBXX_ACAGTG_S9_L003_R1_001.fastq.gz 3753340556 FASTQ R1_L003 unaligned CPTAC3 e63a8f80-3340-4961-8b91-7d6567b3d9ba 48541fdc28c754e4add81d09b3320f64 { 'aliquot_tag': 'ALQ_32ecab3d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00573.RNA-Seq.R1_L004.A C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTCAA_S13_L004_R1_001.fastq.gz 3774504274 FASTQ R1_L004 unaligned CPTAC3 2e2880df-0c02-43ff-a8fc-7f8ca3b8cfa1 f173b3f364ca65d1f7367641a5e9f9b5 { 'aliquot_tag': 'ALQ_9f339f1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00573.RNA-Seq.R2_L003.T C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 170828_UNC31-K00269_0077_AHLF33BBXX_ACAGTG_S9_L003_R2_001.fastq.gz 4057789628 FASTQ R2_L003 unaligned CPTAC3 6da0f2bc-0521-42e0-8b7c-364457d2288b d92b6f105372b6547ea823c42e4225dc { 'aliquot_tag': 'ALQ_32ecab3d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00573.RNA-Seq.R2_L004.A C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTCAA_S13_L004_R2_001.fastq.gz 4013776353 FASTQ R2_L004 unaligned CPTAC3 17350738-3fbb-4894-bed3-5fe7a8d0d6ae ed7061257ddb5e25e8f2f3d541047c2f { 'aliquot_tag': 'ALQ_9f339f1c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00573.RNA-Seq.R1_L003.T C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 170828_UNC31-K00269_0077_AHLF33BBXX_ACAGTG_S9_L003_R1_001.fastq.gz 3753340556 FASTQ R1_L003 unaligned CPTAC3 e63a8f80-3340-4961-8b91-7d6567b3d9ba 48541fdc28c754e4add81d09b3320f64 { 'aliquot_tag': 'ALQ_32ecab3d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00573.RNA-Seq.R1_L004.A C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTCAA_S13_L004_R1_001.fastq.gz 3774504274 FASTQ R1_L004 unaligned CPTAC3 2e2880df-0c02-43ff-a8fc-7f8ca3b8cfa1 f173b3f364ca65d1f7367641a5e9f9b5 { 'aliquot_tag': 'ALQ_9f339f1c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-00573.RNA-Seq.R2_L003.T C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 170828_UNC31-K00269_0077_AHLF33BBXX_ACAGTG_S9_L003_R2_001.fastq.gz 4057789628 FASTQ R2_L003 unaligned CPTAC3 6da0f2bc-0521-42e0-8b7c-364457d2288b d92b6f105372b6547ea823c42e4225dc { 'aliquot_tag': 'ALQ_32ecab3d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00573.RNA-Seq.R2_L004.A C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTCAA_S13_L004_R2_001.fastq.gz 4013776353 FASTQ R2_L004 unaligned CPTAC3 17350738-3fbb-4894-bed3-5fe7a8d0d6ae ed7061257ddb5e25e8f2f3d541047c2f { 'aliquot_tag': 'ALQ_9f339f1c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3N-00573.RNA-Seq.transcriptome.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal CPT0069010006 f9969e12-562a-4ea6-bef3-aec977e22e21.rna_seq.transcriptome.gdc_realn.bam 8964737827 BAM transcriptome harmonized CPTAC3 c8926631-fa8b-4dcb-9ea6-da70055978e7 46d57fe3bc4662b4fd6027075f9ac1f8 { 'aliquot_tag': 'ALQ_9f339f1c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00573.RNA-Seq.transcriptome.T.hg38 C3N-00573 CCRCC RNA-Seq tumor CPT0069000009 2b5ce2fd-96cf-41ce-89b6-52902577d916.rna_seq.transcriptome.gdc_realn.bam 10041898571 BAM transcriptome harmonized CPTAC3 bd90c489-6a45-4da2-93ad-7f01ecd89f07 f40b0fd3c9c88cf0c527059579515fd7 { 'aliquot_tag': 'ALQ_32ecab3d', 'gdc_sample_type': 'Primary Tumor' } C3N-00573.WGS.A C3N-00573 CCRCC WGS tissue_normal CPT0069010009 CPT0069010009.WholeGenome.RP-1303.bam 69090535173 BAM aligned CPTAC3 6d270594-bf4c-4a21-967e-3938ed49b9f5 b8e72e3a1ab1d0934be923387943fbe0 { 'aliquot_tag': 'ALQ_f8c828d', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21831,12 +23602,12 @@ C3N-00574.miRNA-Seq.T C3N-00574 LUAD miRNA-Seq tumor CPT0090860006 180724_UNC32- C3N-00574.miRNA-Seq.T.hg38 C3N-00574 LUAD miRNA-Seq tumor CPT0090860006 260017b1-18d9-4d3f-bcf9-285017d013d1_mirnaseq_gdc_realn.bam 291553624 BAM harmonized CPTAC3 e3776c3f-8887-4e4e-9ff6-e67349f0405c 0d9f5be9ac2885495bf6dbc1188e4021 { 'aliquot_tag': 'ALQ_8df8961e', 'gdc_sample_type': 'Primary Tumor' } C3N-00574.RNA-Seq.chimeric.A.hg38 C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 18a58c36-d800-4004-9e0b-a9f7061daadb.rna_seq.chimeric.gdc_realn.bam 142911348 BAM chimeric harmonized CPTAC3 bfd206aa-bd5b-43cd-beea-00dea0b5fe9d 2858b7ad3a65a72e4f145d3ab4deaece { 'aliquot_tag': 'ALQ_bee3808d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00574.RNA-Seq.chimeric.T.hg38 C3N-00574 LUAD RNA-Seq tumor CPT0090860006 78a5da36-a13e-4177-acb3-d5fec8b6808d.rna_seq.chimeric.gdc_realn.bam 44075065 BAM chimeric harmonized CPTAC3 5aecfec6-e2c6-4067-a028-98a188dd5297 cb53cf617d78356ef132eb605f188893 { 'aliquot_tag': 'ALQ_8df8961e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00574.RNA-Seq.genomic.A.hg38 C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 18a58c36-d800-4004-9e0b-a9f7061daadb.rna_seq.genomic.gdc_realn.bam 9424689591 BAM genomic harmonized CPTAC3 ab1380b9-5ab9-4823-b4ad-142c92affe3f fd39b510a9c3dd34bd7d7b302308044d { 'aliquot_tag': 'ALQ_bee3808d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00574.RNA-Seq.genomic.T.hg38 C3N-00574 LUAD RNA-Seq tumor CPT0090860006 78a5da36-a13e-4177-acb3-d5fec8b6808d.rna_seq.genomic.gdc_realn.bam 10404263676 BAM genomic harmonized CPTAC3 8a6f8c2e-1227-4afb-8b7e-14e331e7f0ca 6018f45537fe9ed4fd32e31b7fa5e8bc { 'aliquot_tag': 'ALQ_8df8961e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00574.RNA-Seq.R1_L004.A C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACAGTG_S16_L004_R1_001.fastq.gz 4416156401 FASTQ R1_L004 unaligned CPTAC3 e58e5af1-32fc-41b7-8957-9b7cecd576a9 25b1f3c948c3008b904d4100e6958734 { 'aliquot_tag': 'ALQ_bee3808d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00574.RNA-Seq.R1_L007.T C3N-00574 LUAD RNA-Seq tumor CPT0090860006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L007_R1_001.fastq.gz 4676322581 FASTQ R1_L007 unaligned CPTAC3 015afacd-88f7-4ba6-816e-6a052ce93628 a1bbabfd9da0f981a6249bef59ba5783 { 'aliquot_tag': 'ALQ_8df8961e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00574.RNA-Seq.R2_L004.A C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACAGTG_S16_L004_R2_001.fastq.gz 4682498670 FASTQ R2_L004 unaligned CPTAC3 af414703-79f3-4d68-be79-9e0f77d0baee 25fd90f707a93241df00296d41ea16a5 { 'aliquot_tag': 'ALQ_bee3808d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00574.RNA-Seq.R2_L007.T C3N-00574 LUAD RNA-Seq tumor CPT0090860006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L007_R2_001.fastq.gz 5050755625 FASTQ R2_L007 unaligned CPTAC3 1f745827-9869-45f6-a84f-6f160ecef687 62a11b78343c4a621a67638c63d80e20 { 'aliquot_tag': 'ALQ_8df8961e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00574.RNA-Seq.genomic.A.hg38 C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 18a58c36-d800-4004-9e0b-a9f7061daadb.rna_seq.genomic.gdc_realn.bam 9424689591 BAM genomic harmonized CPTAC3 deabed94-79ee-4065-b9d8-06d8024f1ba8 fd39b510a9c3dd34bd7d7b302308044d { 'aliquot_tag': 'ALQ_bee3808d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00574.RNA-Seq.genomic.T.hg38 C3N-00574 LUAD RNA-Seq tumor CPT0090860006 78a5da36-a13e-4177-acb3-d5fec8b6808d.rna_seq.genomic.gdc_realn.bam 10404263676 BAM genomic harmonized CPTAC3 6e74cc9e-83fc-4112-8174-18e422459927 6018f45537fe9ed4fd32e31b7fa5e8bc { 'aliquot_tag': 'ALQ_8df8961e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00574.RNA-Seq.R1_L004.A C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACAGTG_S16_L004_R1_001.fastq.gz 4416156401 FASTQ R1_L004 unaligned CPTAC3 e58e5af1-32fc-41b7-8957-9b7cecd576a9 25b1f3c948c3008b904d4100e6958734 { 'aliquot_tag': 'ALQ_bee3808d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-00574.RNA-Seq.R1_L007.T C3N-00574 LUAD RNA-Seq tumor CPT0090860006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L007_R1_001.fastq.gz 4676322581 FASTQ R1_L007 unaligned CPTAC3 015afacd-88f7-4ba6-816e-6a052ce93628 a1bbabfd9da0f981a6249bef59ba5783 { 'aliquot_tag': 'ALQ_8df8961e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00574.RNA-Seq.R2_L004.A C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACAGTG_S16_L004_R2_001.fastq.gz 4682498670 FASTQ R2_L004 unaligned CPTAC3 af414703-79f3-4d68-be79-9e0f77d0baee 25fd90f707a93241df00296d41ea16a5 { 'aliquot_tag': 'ALQ_bee3808d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-00574.RNA-Seq.R2_L007.T C3N-00574 LUAD RNA-Seq tumor CPT0090860006 171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L007_R2_001.fastq.gz 5050755625 FASTQ R2_L007 unaligned CPTAC3 1f745827-9869-45f6-a84f-6f160ecef687 62a11b78343c4a621a67638c63d80e20 { 'aliquot_tag': 'ALQ_8df8961e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00574.RNA-Seq.transcriptome.A.hg38 C3N-00574 LUAD RNA-Seq tissue_normal CPT0090900007 18a58c36-d800-4004-9e0b-a9f7061daadb.rna_seq.transcriptome.gdc_realn.bam 10718727566 BAM transcriptome harmonized CPTAC3 e1a9345a-bdc3-44a6-9ec3-885dec9d3071 d6d03e7bec69883eee5c95f649637070 { 'aliquot_tag': 'ALQ_bee3808d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00574.RNA-Seq.transcriptome.T.hg38 C3N-00574 LUAD RNA-Seq tumor CPT0090860006 78a5da36-a13e-4177-acb3-d5fec8b6808d.rna_seq.transcriptome.gdc_realn.bam 12548124190 BAM transcriptome harmonized CPTAC3 e0962696-b058-4d66-80b3-b71025688850 88a37a01a70e45dc265639e8cdae54a7 { 'aliquot_tag': 'ALQ_8df8961e', 'gdc_sample_type': 'Primary Tumor' } C3N-00574.WGS.A C3N-00574 LUAD WGS tissue_normal CPT0090900010 CPT0090900010.WholeGenome.RP-1303.bam 56152430483 BAM aligned CPTAC3 2bc03203-26ad-493d-8498-89c15197d3ec 4b44b560e88fd3a3dc9599817aace10c { 'aliquot_tag': 'ALQ_399c246f', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21866,16 +23637,16 @@ C3N-00577.DUP_4b90a488.WXS.T.hg38 C3N-00577 CCRCC WXS tumor CPT0069170009 49b836 C3N-00577.DUP_597f2ec8.miRNA-Seq.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069180006 200526_UNC32-K00270_0248_BHH7WFBBXY_CGGAAT_S8_L001_R1_001.unaln.bam 463156172 BAM unaligned CPTAC3 c2192a85-cc2e-4789-8db7-f2094812973d bfbeb34f0d865d54f681ddedc8fda781 { 'aliquot_tag': 'DUP_597f2ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00577.DUP_597f2ec8.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069180006 2d23b851-203c-4a9b-b946-5b91ff2f08c1_mirnaseq_gdc_realn.bam 507716346 BAM harmonized CPTAC3 8e8f9982-4ec0-4bce-b97b-d06dcdd02225 ccacb530c1d8d13387eb56f3859b7075 { 'aliquot_tag': 'DUP_597f2ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00577.DUP_597f2ec8.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 c55b4f17-c204-4716-8b70-f8e57b19c997.rna_seq.chimeric.gdc_realn.bam 61931323 BAM chimeric harmonized CPTAC3 e213b21e-3a99-46ee-9ed1-cf77ca3e1241 678334d6be0acecd006d6488a87b85c8 { 'aliquot_tag': 'DUP_597f2ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00577.DUP_597f2ec8.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 c55b4f17-c204-4716-8b70-f8e57b19c997.rna_seq.genomic.gdc_realn.bam 9399824558 BAM genomic harmonized CPTAC3 ac35a8a0-2a05-49d6-b443-e5a003141d29 a75387e64e6638ad0543b9bfa70f58d5 { 'aliquot_tag': 'DUP_597f2ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00577.DUP_597f2ec8.RNA-Seq.R1_L008.T C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGTTATA-CAGTTCCG_S29_L008_R1_001.fastq.gz 4434135807 FASTQ R1_L008 unaligned CPTAC3 60437aba-8115-44b3-84df-8849e86a5a1a eb36a7eed0a343b7030f3fa725343e5b { 'aliquot_tag': 'DUP_597f2ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00577.DUP_597f2ec8.RNA-Seq.R2_L008.T C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGTTATA-CAGTTCCG_S29_L008_R2_001.fastq.gz 4984857975 FASTQ R2_L008 unaligned CPTAC3 91d20682-7bde-4749-bac3-4f27f96f885a 40bd78763828a6f7c3ea70cc11b6886e { 'aliquot_tag': 'DUP_597f2ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00577.DUP_597f2ec8.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 c55b4f17-c204-4716-8b70-f8e57b19c997.rna_seq.genomic.gdc_realn.bam 9399824558 BAM genomic harmonized CPTAC3 5756adc0-42cb-483b-af69-024de3e5d993 a75387e64e6638ad0543b9bfa70f58d5 { 'aliquot_tag': 'DUP_597f2ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00577.DUP_597f2ec8.RNA-Seq.R1_L008.T C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGTTATA-CAGTTCCG_S29_L008_R1_001.fastq.gz 4434135807 FASTQ R1_L008 unaligned CPTAC3 60437aba-8115-44b3-84df-8849e86a5a1a eb36a7eed0a343b7030f3fa725343e5b { 'aliquot_tag': 'DUP_597f2ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3N-00577.DUP_597f2ec8.RNA-Seq.R2_L008.T C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 200519_UNC31-K00269_0280_BHHKGNBBXY_AGGTTATA-CAGTTCCG_S29_L008_R2_001.fastq.gz 4984857975 FASTQ R2_L008 unaligned CPTAC3 91d20682-7bde-4749-bac3-4f27f96f885a 40bd78763828a6f7c3ea70cc11b6886e { 'aliquot_tag': 'DUP_597f2ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3N-00577.DUP_597f2ec8.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069180006 c55b4f17-c204-4716-8b70-f8e57b19c997.rna_seq.transcriptome.gdc_realn.bam 12381574272 BAM transcriptome harmonized CPTAC3 a29c34e3-9f88-45d6-a2fd-6c550da84910 dd6b177c4e6e86cf610fad683e01d358 { 'aliquot_tag': 'DUP_597f2ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00577.DUP_a1efea79.miRNA-Seq.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069150006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTTGA_S36_L005_R1_001.unaln.bam 184070990 BAM unaligned CPTAC3 53edc5cd-f442-40d0-8dc2-86caa01f9d74 6f4f5213fa88873ad505857f5753e716 { 'aliquot_tag': 'DUP_a1efea79', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00577.DUP_a1efea79.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069150006 2d267255-15d9-4c81-9aaa-e9e247d8f685_mirnaseq_gdc_realn.bam 203497337 BAM harmonized CPTAC3 b2a6ff8c-d0ca-43c1-8ecf-f30bce63bbf2 b9efb580e1b35a247c29776c23267287 { 'aliquot_tag': 'DUP_a1efea79', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00577.DUP_a1efea79.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 8e0d8c49-d781-4178-a990-1087284a79a6.rna_seq.chimeric.gdc_realn.bam 115088007 BAM chimeric harmonized CPTAC3 a469ef69-0ad4-4100-8f26-00a8c194eba6 84fa5aa5954ffcff409c5f5fddbe98c7 { 'aliquot_tag': 'DUP_a1efea79', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00577.DUP_a1efea79.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 8e0d8c49-d781-4178-a990-1087284a79a6.rna_seq.genomic.gdc_realn.bam 11292644587 BAM genomic harmonized CPTAC3 75ab71e6-c3fa-4a2a-9227-071a92ade854 5f4d6574d44526e0c3921667c2ee8ca1 { 'aliquot_tag': 'DUP_a1efea79', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00577.DUP_a1efea79.RNA-Seq.R1_L005.T C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 200518_UNC32-K00270_0247_AHH573BBXY_TGGATCGA-GTGCGATA_S35_L005_R1_001.fastq.gz 5367247074 FASTQ R1_L005 unaligned CPTAC3 597afa5b-9346-4018-9b9e-72dd9003259f 9f1d57ee81b69f757f06a31d2c4f7160 { 'aliquot_tag': 'DUP_a1efea79', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00577.DUP_a1efea79.RNA-Seq.R2_L005.T C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 200518_UNC32-K00270_0247_AHH573BBXY_TGGATCGA-GTGCGATA_S35_L005_R2_001.fastq.gz 6345599528 FASTQ R2_L005 unaligned CPTAC3 16cac540-faae-4c30-9a93-0401752d030b a0691d5eac059bdfde5ed9f13d4eaeaa { 'aliquot_tag': 'DUP_a1efea79', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00577.DUP_a1efea79.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 8e0d8c49-d781-4178-a990-1087284a79a6.rna_seq.genomic.gdc_realn.bam 11292644587 BAM genomic harmonized CPTAC3 7831b501-4c9e-4282-894a-9180bb347d4e 5f4d6574d44526e0c3921667c2ee8ca1 { 'aliquot_tag': 'DUP_a1efea79', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00577.DUP_a1efea79.RNA-Seq.R1_L005.T C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 200518_UNC32-K00270_0247_AHH573BBXY_TGGATCGA-GTGCGATA_S35_L005_R1_001.fastq.gz 5367247074 FASTQ R1_L005 unaligned CPTAC3 597afa5b-9346-4018-9b9e-72dd9003259f 9f1d57ee81b69f757f06a31d2c4f7160 { 'aliquot_tag': 'DUP_a1efea79', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3N-00577.DUP_a1efea79.RNA-Seq.R2_L005.T C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 200518_UNC32-K00270_0247_AHH573BBXY_TGGATCGA-GTGCGATA_S35_L005_R2_001.fastq.gz 6345599528 FASTQ R2_L005 unaligned CPTAC3 16cac540-faae-4c30-9a93-0401752d030b a0691d5eac059bdfde5ed9f13d4eaeaa { 'aliquot_tag': 'DUP_a1efea79', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3N-00577.DUP_a1efea79.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069150006 8e0d8c49-d781-4178-a990-1087284a79a6.rna_seq.transcriptome.gdc_realn.bam 16544698267 BAM transcriptome harmonized CPTAC3 987e0d16-d94d-4c04-9836-586a36bc98fd 0ce2af44556b7c98a54f4a6815c5b369 { 'aliquot_tag': 'DUP_a1efea79', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00577.DUP_c9c03359.MethArray.Green.T C3N-00577 CCRCC Methylation Array tumor CPT0069180009 204367490082_R03C01_Grn.idat 13677900 IDAT Green NA CPTAC3 35449faa-21ec-4fc9-8f4b-d8f305d0968f ddd9af4e5b05245af8da27e4737b3d60 { 'aliquot_tag': 'DUP_c9c03359', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00577.DUP_c9c03359.MethArray.Red.T C3N-00577 CCRCC Methylation Array tumor CPT0069180009 204367490082_R03C01_Red.idat 13677900 IDAT Red NA CPTAC3 8f7e3ae4-401f-4a2f-934a-f6baa6e749e3 f1b7d1347603b5036676721901d6c32b { 'aliquot_tag': 'DUP_c9c03359', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -21887,8 +23658,8 @@ C3N-00577.DUP_db2fb919.miRNA-Seq.T C3N-00577 CCRCC miRNA-Seq tumor CPT0069170006 C3N-00577.DUP_db2fb919.miRNA-Seq.T.hg38 C3N-00577 CCRCC miRNA-Seq tumor CPT0069170006 814fa060-8ef4-404b-8059-dc7524965419_mirnaseq_gdc_realn.bam 207350277 BAM harmonized CPTAC3 30c56365-ade7-47d2-8e38-6a10d905beaf 153c91cde5b56ab870db2f2deac82a27 { 'aliquot_tag': 'DUP_db2fb919', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00577.DUP_db2fb919.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 cc3154e0-937b-46fd-810b-4902e8ffd157.rna_seq.chimeric.gdc_realn.bam 50965546 BAM chimeric harmonized CPTAC3 78797883-f740-4f25-adf9-28a43a005d40 266c0f97a68c4893d4c8985f7ae1119c { 'aliquot_tag': 'DUP_db2fb919', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00577.DUP_db2fb919.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 cc3154e0-937b-46fd-810b-4902e8ffd157.rna_seq.genomic.gdc_realn.bam 7998487918 BAM genomic harmonized CPTAC3 d9de84f9-f69f-470e-aa9a-530a82eaa7a9 463655237a4393825250172b5a1cb0cc { 'aliquot_tag': 'DUP_db2fb919', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00577.DUP_db2fb919.RNA-Seq.R1_L007.T C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 200519_UNC31-K00269_0280_BHHKGNBBXY_TCATCCTT-AGCGAGCT_S28_L007_R1_001.fastq.gz 3840518948 FASTQ R1_L007 unaligned CPTAC3 646f78df-cd18-4ce3-a1f6-9da37aef3308 2926811c7a5ba4859d8b7a84fda6c878 { 'aliquot_tag': 'DUP_db2fb919', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00577.DUP_db2fb919.RNA-Seq.R2_L007.T C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 200519_UNC31-K00269_0280_BHHKGNBBXY_TCATCCTT-AGCGAGCT_S28_L007_R2_001.fastq.gz 4290629334 FASTQ R2_L007 unaligned CPTAC3 d0440171-58ed-4780-807e-8cc091ca601a a3214d2f3948188b8290ab52f1952438 { 'aliquot_tag': 'DUP_db2fb919', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00577.DUP_db2fb919.RNA-Seq.R1_L007.T C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 200519_UNC31-K00269_0280_BHHKGNBBXY_TCATCCTT-AGCGAGCT_S28_L007_R1_001.fastq.gz 3840518948 FASTQ R1_L007 unaligned CPTAC3 646f78df-cd18-4ce3-a1f6-9da37aef3308 2926811c7a5ba4859d8b7a84fda6c878 { 'aliquot_tag': 'DUP_db2fb919', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3N-00577.DUP_db2fb919.RNA-Seq.R2_L007.T C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 200519_UNC31-K00269_0280_BHHKGNBBXY_TCATCCTT-AGCGAGCT_S28_L007_R2_001.fastq.gz 4290629334 FASTQ R2_L007 unaligned CPTAC3 d0440171-58ed-4780-807e-8cc091ca601a a3214d2f3948188b8290ab52f1952438 { 'aliquot_tag': 'DUP_db2fb919', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3N-00577.DUP_db2fb919.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069170006 cc3154e0-937b-46fd-810b-4902e8ffd157.rna_seq.transcriptome.gdc_realn.bam 12141553956 BAM transcriptome harmonized CPTAC3 725cb00b-b4eb-439c-8e4c-fd879d1df3aa 475c7117df2f18691ac7fcecb18125a1 { 'aliquot_tag': 'DUP_db2fb919', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00577.MethArray.Green.A C3N-00577 CCRCC Methylation Array tissue_normal CPT0069190009 204930640065_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 904bd903-7d50-4618-ab6f-197e3f881b3e ff41041e10af386a5225ebbebe87545a { 'aliquot_tag': 'ALQ_f4a01ae9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00577.MethArray.Green.T C3N-00577 CCRCC Methylation Array tumor CPT0069160006 202178770079_R06C01_Grn.idat 13676241 IDAT Green NA CPTAC3 b71c6660-9862-442d-986d-c925a53b9d4c 078072395dfe304b4ba188a9feb7ee23 { 'aliquot_tag': 'ALQ_e64f90a9', 'gdc_sample_type': 'Primary Tumor' } @@ -21902,10 +23673,10 @@ C3N-00577.RNA-Seq.chimeric.A.hg38 C3N-00577 CCRCC RNA-Seq tissue_normal CPT00691 C3N-00577.RNA-Seq.chimeric.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 a957ff47-8688-4b9d-810e-d2fee99c1eeb.rna_seq.chimeric.gdc_realn.bam 37673311 BAM chimeric harmonized CPTAC3 c66cc7c9-ae7f-4cc9-b3f0-794d652bd346 3fe87f47abc399ad36db7c6359531d07 { 'aliquot_tag': 'ALQ_76f08d38', 'gdc_sample_type': 'Primary Tumor' } C3N-00577.RNA-Seq.genomic.A.hg38 C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 2730fe8c-9402-4508-893c-96703c4a2482.rna_seq.genomic.gdc_realn.bam 8683774616 BAM genomic harmonized CPTAC3 cc4c1875-0a47-4207-b3e9-e3067847eba3 9e62124d1a51a65090054f49770b3a08 { 'aliquot_tag': 'ALQ_641f0778', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00577.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 a957ff47-8688-4b9d-810e-d2fee99c1eeb.rna_seq.genomic.gdc_realn.bam 9324648846 BAM genomic harmonized CPTAC3 b7a6709c-175a-4815-8001-675a977a0434 5ecf3248800e27214508e45d77596ac7 { 'aliquot_tag': 'ALQ_76f08d38', 'gdc_sample_type': 'Primary Tumor' } -C3N-00577.RNA-Seq.R1_L003.A C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTTCC_S9_L003_R1_001.fastq.gz 4329378837 FASTQ R1_L003 unaligned CPTAC3 4d3c59d0-b5c0-4299-ac8f-8b51ca8b4938 1f3b8bd284e1b355bb43b3ef07b72a02 { 'aliquot_tag': 'ALQ_641f0778', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00577.RNA-Seq.R1_L003.T C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 170828_UNC31-K00269_0077_AHLF33BBXX_GCCAAT_S11_L003_R1_001.fastq.gz 4640183044 FASTQ R1_L003 unaligned CPTAC3 a979d5b0-ffce-4214-b01a-05afd602eb21 545d58b91899da40cbf847109be025a3 { 'aliquot_tag': 'ALQ_76f08d38', 'gdc_sample_type': 'Primary Tumor' } -C3N-00577.RNA-Seq.R2_L003.A C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTTCC_S9_L003_R2_001.fastq.gz 4611916650 FASTQ R2_L003 unaligned CPTAC3 2cc2a75d-9c3e-4dea-aa07-08a8a446e33e 0e476cc061d399f797530706a813f9af { 'aliquot_tag': 'ALQ_641f0778', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00577.RNA-Seq.R2_L003.T C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 170828_UNC31-K00269_0077_AHLF33BBXX_GCCAAT_S11_L003_R2_001.fastq.gz 5008682904 FASTQ R2_L003 unaligned CPTAC3 e920ce07-464f-4b33-8975-844c5780aa23 946e8a55d9de57a9af758553e880031d { 'aliquot_tag': 'ALQ_76f08d38', 'gdc_sample_type': 'Primary Tumor' } +C3N-00577.RNA-Seq.R1_L003.A C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTTCC_S9_L003_R1_001.fastq.gz 4329378837 FASTQ R1_L003 unaligned CPTAC3 4d3c59d0-b5c0-4299-ac8f-8b51ca8b4938 1f3b8bd284e1b355bb43b3ef07b72a02 { 'aliquot_tag': 'ALQ_641f0778', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-00577.RNA-Seq.R1_L003.T C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 170828_UNC31-K00269_0077_AHLF33BBXX_GCCAAT_S11_L003_R1_001.fastq.gz 4640183044 FASTQ R1_L003 unaligned CPTAC3 a979d5b0-ffce-4214-b01a-05afd602eb21 545d58b91899da40cbf847109be025a3 { 'aliquot_tag': 'ALQ_76f08d38', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00577.RNA-Seq.R2_L003.A C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 171212_UNC31-K00269_0102_AHN5MMBBXX_AGTTCC_S9_L003_R2_001.fastq.gz 4611916650 FASTQ R2_L003 unaligned CPTAC3 2cc2a75d-9c3e-4dea-aa07-08a8a446e33e 0e476cc061d399f797530706a813f9af { 'aliquot_tag': 'ALQ_641f0778', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-00577.RNA-Seq.R2_L003.T C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 170828_UNC31-K00269_0077_AHLF33BBXX_GCCAAT_S11_L003_R2_001.fastq.gz 5008682904 FASTQ R2_L003 unaligned CPTAC3 e920ce07-464f-4b33-8975-844c5780aa23 946e8a55d9de57a9af758553e880031d { 'aliquot_tag': 'ALQ_76f08d38', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-00577.RNA-Seq.transcriptome.A.hg38 C3N-00577 CCRCC RNA-Seq tissue_normal CPT0069190006 2730fe8c-9402-4508-893c-96703c4a2482.rna_seq.transcriptome.gdc_realn.bam 10279472984 BAM transcriptome harmonized CPTAC3 caafdc9e-ef8f-4a7e-9b14-657e58d968f8 0155877ce16d6d273cb7df5c2d2cdac3 { 'aliquot_tag': 'ALQ_641f0778', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00577.RNA-Seq.transcriptome.T.hg38 C3N-00577 CCRCC RNA-Seq tumor CPT0069160009 a957ff47-8688-4b9d-810e-d2fee99c1eeb.rna_seq.transcriptome.gdc_realn.bam 13226154960 BAM transcriptome harmonized CPTAC3 15cce07d-a9af-40bc-bf73-ceed6eefa645 4e7e02504f519b467d6ea1a56f9b3e16 { 'aliquot_tag': 'ALQ_76f08d38', 'gdc_sample_type': 'Primary Tumor' } C3N-00577.WGS.A C3N-00577 CCRCC WGS tissue_normal CPT0069190009 CPT0069190009.WholeGenome.RP-1303.bam 57243384408 BAM aligned CPTAC3 035edd67-47b8-446a-972a-7dfbd6443b13 d7d012bba50e3d24d881bf8b4d893b67 { 'aliquot_tag': 'ALQ_f4a01ae9', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21930,12 +23701,12 @@ C3N-00578.miRNA-Seq.T C3N-00578 LUAD miRNA-Seq tumor CPT0069360009 181108_UNC31- C3N-00578.miRNA-Seq.T.hg38 C3N-00578 LUAD miRNA-Seq tumor CPT0069360009 d866d597-2308-4f42-8c97-ab1f9aa7a9f8_mirnaseq_gdc_realn.bam 192740386 BAM harmonized CPTAC3 f6bf63b1-327f-4f7d-9dd4-39686927d334 bad1b3536a779f7065a0fc0ff2ea3990 { 'aliquot_tag': 'ALQ_3b382c33', 'gdc_sample_type': 'Primary Tumor' } C3N-00578.RNA-Seq.chimeric.A.hg38 C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 42403e41-15b4-4a16-9c3a-d38751729176.rna_seq.chimeric.gdc_realn.bam 166628844 BAM chimeric harmonized CPTAC3 d6d04a2e-0a93-4cf9-919a-2726ca063dac ae4f37d2946eb59dadaffbd9b060cb7c { 'aliquot_tag': 'ALQ_96e71812', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00578.RNA-Seq.chimeric.T.hg38 C3N-00578 LUAD RNA-Seq tumor CPT0069360009 11302073-0f4b-4cc0-b7e0-3f588a5ddecb.rna_seq.chimeric.gdc_realn.bam 19940346 BAM chimeric harmonized CPTAC3 2d97b434-40e6-460f-8ca4-0828f5c6fb97 e27aede613f823622b3efbca4fababe8 { 'aliquot_tag': 'ALQ_3b382c33', 'gdc_sample_type': 'Primary Tumor' } -C3N-00578.RNA-Seq.genomic.A.hg38 C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 42403e41-15b4-4a16-9c3a-d38751729176.rna_seq.genomic.gdc_realn.bam 9711180006 BAM genomic harmonized CPTAC3 58cb7819-918e-419e-9ef4-5724d15f4f04 2078c5f6b84b0a03a62f0498e07fbc45 { 'aliquot_tag': 'ALQ_96e71812', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00578.RNA-Seq.genomic.T.hg38 C3N-00578 LUAD RNA-Seq tumor CPT0069360009 11302073-0f4b-4cc0-b7e0-3f588a5ddecb.rna_seq.genomic.gdc_realn.bam 7825487659 BAM genomic harmonized CPTAC3 1d8a7d6d-f186-4030-b6d1-89e937f2cf67 2078aa7965f4a271508f01dcb964ca29 { 'aliquot_tag': 'ALQ_3b382c33', 'gdc_sample_type': 'Primary Tumor' } -C3N-00578.RNA-Seq.R1_L003.T C3N-00578 LUAD RNA-Seq tumor CPT0069360009 170828_UNC31-K00269_0077_AHLF33BBXX_CAGATC_S10_L003_R1_001.fastq.gz 3705302992 FASTQ R1_L003 unaligned CPTAC3 f6ac476d-f351-4150-bebc-909e6eedec73 e76450bedb52923f280745aa2ee47cf9 { 'aliquot_tag': 'ALQ_3b382c33', 'gdc_sample_type': 'Primary Tumor' } -C3N-00578.RNA-Seq.R1_L006.A C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATTCCT_S22_L006_R1_001.fastq.gz 4461269775 FASTQ R1_L006 unaligned CPTAC3 774a69eb-0843-44ee-be33-e692efec1271 5cdb14fe63c5cb04505fac7d8b6ad0fc { 'aliquot_tag': 'ALQ_96e71812', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00578.RNA-Seq.R2_L003.T C3N-00578 LUAD RNA-Seq tumor CPT0069360009 170828_UNC31-K00269_0077_AHLF33BBXX_CAGATC_S10_L003_R2_001.fastq.gz 4025633873 FASTQ R2_L003 unaligned CPTAC3 5f22e76b-acfc-4033-9c59-f65b5eabf489 bfa2ea3a1599bf98d74b6738853f6a99 { 'aliquot_tag': 'ALQ_3b382c33', 'gdc_sample_type': 'Primary Tumor' } -C3N-00578.RNA-Seq.R2_L006.A C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATTCCT_S22_L006_R2_001.fastq.gz 4791684271 FASTQ R2_L006 unaligned CPTAC3 6876b279-666e-4501-84ab-79d09724fa33 199075c45dd10e5e56e8b40ad546a9e5 { 'aliquot_tag': 'ALQ_96e71812', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00578.RNA-Seq.genomic.A.hg38 C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 42403e41-15b4-4a16-9c3a-d38751729176.rna_seq.genomic.gdc_realn.bam 9711180006 BAM genomic harmonized CPTAC3 f08c78ee-7c7f-4f09-9083-a064ae719a8b 2078c5f6b84b0a03a62f0498e07fbc45 { 'aliquot_tag': 'ALQ_96e71812', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00578.RNA-Seq.genomic.T.hg38 C3N-00578 LUAD RNA-Seq tumor CPT0069360009 11302073-0f4b-4cc0-b7e0-3f588a5ddecb.rna_seq.genomic.gdc_realn.bam 7825487659 BAM genomic harmonized CPTAC3 43f49c84-1b86-4447-ae64-29c296126b1f 2078aa7965f4a271508f01dcb964ca29 { 'aliquot_tag': 'ALQ_3b382c33', 'gdc_sample_type': 'Primary Tumor' } +C3N-00578.RNA-Seq.R1_L003.T C3N-00578 LUAD RNA-Seq tumor CPT0069360009 170828_UNC31-K00269_0077_AHLF33BBXX_CAGATC_S10_L003_R1_001.fastq.gz 3705302992 FASTQ R1_L003 unaligned CPTAC3 f6ac476d-f351-4150-bebc-909e6eedec73 e76450bedb52923f280745aa2ee47cf9 { 'aliquot_tag': 'ALQ_3b382c33', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00578.RNA-Seq.R1_L006.A C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATTCCT_S22_L006_R1_001.fastq.gz 4461269775 FASTQ R1_L006 unaligned CPTAC3 774a69eb-0843-44ee-be33-e692efec1271 5cdb14fe63c5cb04505fac7d8b6ad0fc { 'aliquot_tag': 'ALQ_96e71812', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00578.RNA-Seq.R2_L003.T C3N-00578 LUAD RNA-Seq tumor CPT0069360009 170828_UNC31-K00269_0077_AHLF33BBXX_CAGATC_S10_L003_R2_001.fastq.gz 4025633873 FASTQ R2_L003 unaligned CPTAC3 5f22e76b-acfc-4033-9c59-f65b5eabf489 bfa2ea3a1599bf98d74b6738853f6a99 { 'aliquot_tag': 'ALQ_3b382c33', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00578.RNA-Seq.R2_L006.A C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATTCCT_S22_L006_R2_001.fastq.gz 4791684271 FASTQ R2_L006 unaligned CPTAC3 6876b279-666e-4501-84ab-79d09724fa33 199075c45dd10e5e56e8b40ad546a9e5 { 'aliquot_tag': 'ALQ_96e71812', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-00578.RNA-Seq.transcriptome.A.hg38 C3N-00578 LUAD RNA-Seq tissue_normal CPT0069370006 42403e41-15b4-4a16-9c3a-d38751729176.rna_seq.transcriptome.gdc_realn.bam 9949495173 BAM transcriptome harmonized CPTAC3 152d6a62-5c8c-4d81-b00c-5b37a9c1c5cf 97be23a7178683b675a81cbb00286799 { 'aliquot_tag': 'ALQ_96e71812', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00578.RNA-Seq.transcriptome.T.hg38 C3N-00578 LUAD RNA-Seq tumor CPT0069360009 11302073-0f4b-4cc0-b7e0-3f588a5ddecb.rna_seq.transcriptome.gdc_realn.bam 12465037378 BAM transcriptome harmonized CPTAC3 b193b525-1d9f-41bb-b6e9-65b08a14f612 64f14ffb380c57bc6ebde9667364015c { 'aliquot_tag': 'ALQ_3b382c33', 'gdc_sample_type': 'Primary Tumor' } C3N-00578.WGS.A C3N-00578 LUAD WGS tissue_normal CPT0069370009 CPT0069370009.WholeGenome.RP-1303.bam 56208312229 BAM aligned CPTAC3 830c92bb-fba3-4307-a157-82790e0dc4d1 3526ff4ecad2d340560ae179519e8d60 { 'aliquot_tag': 'ALQ_6580583', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21961,11 +23732,11 @@ C3N-00579.miRNA-Seq.T.hg38 C3N-00579 LUAD miRNA-Seq tumor CPT0069520006 0e51f041 C3N-00579.RNA-Seq.chimeric.A.hg38 C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 3404f270-557d-4dcf-8984-9f9e81414ee8.rna_seq.chimeric.gdc_realn.bam 53176565 BAM chimeric harmonized CPTAC3 73e5917c-8fe7-4c16-b9a6-72fd5c2faa67 7fe0759607f9b613bf54feb033968806 { 'aliquot_tag': 'ALQ_3a7ea86f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00579.RNA-Seq.chimeric.T.hg38 C3N-00579 LUAD RNA-Seq tumor CPT0069520006 eadb4ebe-0755-48d9-8513-61eda12cf87d.rna_seq.chimeric.gdc_realn.bam 145125280 BAM chimeric harmonized CPTAC3 5db61210-cb1f-4140-958a-a9d32d672b8f b6ea934def3422434ff8be9a355d6234 { 'aliquot_tag': 'ALQ_885e747f', 'gdc_sample_type': 'Primary Tumor' } C3N-00579.RNA-Seq.genomic.A.hg38 C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 3404f270-557d-4dcf-8984-9f9e81414ee8.rna_seq.genomic.gdc_realn.bam 8680766740 BAM genomic harmonized CPTAC3 78f0569d-9c6e-4f01-88cb-7cfee33ce236 89c344019c2a2468075f897c26eab674 { 'aliquot_tag': 'ALQ_3a7ea86f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00579.RNA-Seq.genomic.T.hg38 C3N-00579 LUAD RNA-Seq tumor CPT0069520006 eadb4ebe-0755-48d9-8513-61eda12cf87d.rna_seq.genomic.gdc_realn.bam 9180590500 BAM genomic harmonized CPTAC3 e6337a53-637e-4e4a-a314-bed7e621e25c aa30626722588c598532c4893dcabe85 { 'aliquot_tag': 'ALQ_885e747f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00579.RNA-Seq.R1_L001.T C3N-00579 LUAD RNA-Seq tumor CPT0069520006 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L001_R1_001.fastq.gz 4570401781 FASTQ R1_L001 unaligned CPTAC3 2dc06519-2912-4a7c-bb3b-0e5e6be9dea2 9721141ad078c349e75f8b1e14f4c200 { 'aliquot_tag': 'ALQ_885e747f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00579.RNA-Seq.R1_L006.A C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATCACG_S21_L006_R1_001.fastq.gz 4006896917 FASTQ R1_L006 unaligned CPTAC3 887d82b0-c520-4966-8d54-89acb12a45b1 cd9eb427996a89f69f9f719b9c461925 { 'aliquot_tag': 'ALQ_3a7ea86f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00579.RNA-Seq.R2_L001.T C3N-00579 LUAD RNA-Seq tumor CPT0069520006 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L001_R2_001.fastq.gz 4925248612 FASTQ R2_L001 unaligned CPTAC3 12a9c469-d3a1-4230-aa37-b438f58e5b5f 2682af2b05a1c89bac02f286653d4e26 { 'aliquot_tag': 'ALQ_885e747f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00579.RNA-Seq.R2_L006.A C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATCACG_S21_L006_R2_001.fastq.gz 3795414502 FASTQ R2_L006 unaligned CPTAC3 b83f8026-deb8-4ee0-bc10-27704ff2d3e1 d1321f8d9bf84f97e8348989713fc632 { 'aliquot_tag': 'ALQ_3a7ea86f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00579.RNA-Seq.genomic.T.hg38 C3N-00579 LUAD RNA-Seq tumor CPT0069520006 eadb4ebe-0755-48d9-8513-61eda12cf87d.rna_seq.genomic.gdc_realn.bam 9180590500 BAM genomic harmonized CPTAC3 e1c93d13-2cec-445e-bd45-64d01f9fd71a aa30626722588c598532c4893dcabe85 { 'aliquot_tag': 'ALQ_885e747f', 'gdc_sample_type': 'Primary Tumor' } +C3N-00579.RNA-Seq.R1_L001.T C3N-00579 LUAD RNA-Seq tumor CPT0069520006 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L001_R1_001.fastq.gz 4570401781 FASTQ R1_L001 unaligned CPTAC3 2dc06519-2912-4a7c-bb3b-0e5e6be9dea2 9721141ad078c349e75f8b1e14f4c200 { 'aliquot_tag': 'ALQ_885e747f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00579.RNA-Seq.R1_L006.A C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATCACG_S21_L006_R1_001.fastq.gz 4006896917 FASTQ R1_L006 unaligned CPTAC3 887d82b0-c520-4966-8d54-89acb12a45b1 cd9eb427996a89f69f9f719b9c461925 { 'aliquot_tag': 'ALQ_3a7ea86f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00579.RNA-Seq.R2_L001.T C3N-00579 LUAD RNA-Seq tumor CPT0069520006 170905_UNC31-K00269_0079_AHLCF7BBXX_CTTGTA_S4_L001_R2_001.fastq.gz 4925248612 FASTQ R2_L001 unaligned CPTAC3 12a9c469-d3a1-4230-aa37-b438f58e5b5f 2682af2b05a1c89bac02f286653d4e26 { 'aliquot_tag': 'ALQ_885e747f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00579.RNA-Seq.R2_L006.A C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 171215_UNC32-K00270_0073_BHN3NFBBXX_ATCACG_S21_L006_R2_001.fastq.gz 3795414502 FASTQ R2_L006 unaligned CPTAC3 b83f8026-deb8-4ee0-bc10-27704ff2d3e1 d1321f8d9bf84f97e8348989713fc632 { 'aliquot_tag': 'ALQ_3a7ea86f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-00579.RNA-Seq.transcriptome.A.hg38 C3N-00579 LUAD RNA-Seq tissue_normal CPT0069550006 3404f270-557d-4dcf-8984-9f9e81414ee8.rna_seq.transcriptome.gdc_realn.bam 7969596382 BAM transcriptome harmonized CPTAC3 c0551c4d-ac80-4f7c-90ff-0f5dbe6a49cc 193f6bb3cf88b979ec7b9e7bf225a507 { 'aliquot_tag': 'ALQ_3a7ea86f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00579.RNA-Seq.transcriptome.T.hg38 C3N-00579 LUAD RNA-Seq tumor CPT0069520006 eadb4ebe-0755-48d9-8513-61eda12cf87d.rna_seq.transcriptome.gdc_realn.bam 12307238605 BAM transcriptome harmonized CPTAC3 1ed88ddd-b7ca-4cc3-8cbd-086612d07e2b 8d43898b12b9dbd6aa7fbc17845561f4 { 'aliquot_tag': 'ALQ_885e747f', 'gdc_sample_type': 'Primary Tumor' } C3N-00579.WGS.A C3N-00579 LUAD WGS tissue_normal CPT0069550009 CPT0069550009.WholeGenome.RP-1303.bam 60627770913 BAM aligned CPTAC3 95ec4b31-9cf5-4591-aacc-7f3c8b417995 9cde82338adebafd69edd5f3c7125027 { 'aliquot_tag': 'ALQ_aac1b5fe', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -21990,12 +23761,12 @@ C3N-00580.miRNA-Seq.T C3N-00580 LUAD miRNA-Seq tumor CPT0069700009 190813_UNC32- C3N-00580.miRNA-Seq.T.hg38 C3N-00580 LUAD miRNA-Seq tumor CPT0069700009 14aedc14-7107-4fdf-83d1-78fa3576403d_mirnaseq_gdc_realn.bam 305210675 BAM harmonized CPTAC3 bc0f99e7-2817-415c-95f8-584e651364b1 81f557b8e67ed2c7f207a8a932ed17d6 { 'aliquot_tag': 'ALQ_2fe99b85', 'gdc_sample_type': 'Primary Tumor' } C3N-00580.RNA-Seq.chimeric.A.hg38 C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 fb0ffae1-0a43-4c15-a94e-01b9f11cdf82.rna_seq.chimeric.gdc_realn.bam 74274362 BAM chimeric harmonized CPTAC3 2ae004b2-4c5b-4e39-8dfe-578e31ac3d99 e803bd3e6406f3fb25820a48559c246d { 'aliquot_tag': 'ALQ_c596d574', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00580.RNA-Seq.chimeric.T.hg38 C3N-00580 LUAD RNA-Seq tumor CPT0069700009 7fe34327-2d33-4740-8ffc-1b7db15323bb.rna_seq.chimeric.gdc_realn.bam 20020809 BAM chimeric harmonized CPTAC3 7dfe7342-f771-46af-8593-a119801f6f29 18163e2bcaa0b29cc8cc718e2fb032dd { 'aliquot_tag': 'ALQ_2fe99b85', 'gdc_sample_type': 'Primary Tumor' } -C3N-00580.RNA-Seq.genomic.A.hg38 C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 fb0ffae1-0a43-4c15-a94e-01b9f11cdf82.rna_seq.genomic.gdc_realn.bam 9094184406 BAM genomic harmonized CPTAC3 0c2ac832-49d1-4a1a-a329-9210e901a9cb 04bbf180740a37b66a353d00c53ce55f { 'aliquot_tag': 'ALQ_c596d574', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00580.RNA-Seq.genomic.T.hg38 C3N-00580 LUAD RNA-Seq tumor CPT0069700009 7fe34327-2d33-4740-8ffc-1b7db15323bb.rna_seq.genomic.gdc_realn.bam 7270226363 BAM genomic harmonized CPTAC3 3addde83-74ff-431e-b564-a845e042cb36 6dcd0e0a7674364d99ea64d1cc0f5a06 { 'aliquot_tag': 'ALQ_2fe99b85', 'gdc_sample_type': 'Primary Tumor' } -C3N-00580.RNA-Seq.R1_L003.T C3N-00580 LUAD RNA-Seq tumor CPT0069700009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTTGA_S12_L003_R1_001.fastq.gz 3566734047 FASTQ R1_L003 unaligned CPTAC3 c50c7d37-c119-4937-81ae-f49516e5ba50 85be4975c116fb485155ccf150f2bd4d { 'aliquot_tag': 'ALQ_2fe99b85', 'gdc_sample_type': 'Primary Tumor' } -C3N-00580.RNA-Seq.R1_L006.A C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGATGT_S20_L006_R1_001.fastq.gz 4342183966 FASTQ R1_L006 unaligned CPTAC3 e738c358-76df-42d6-b0ad-b608c5e07e41 e939556fa339d46d8ac2a2265903d4c2 { 'aliquot_tag': 'ALQ_c596d574', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00580.RNA-Seq.R2_L003.T C3N-00580 LUAD RNA-Seq tumor CPT0069700009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTTGA_S12_L003_R2_001.fastq.gz 3841244008 FASTQ R2_L003 unaligned CPTAC3 83fa11c9-a986-4ad2-8037-ad8d185c0a1e efb8296aa43e419b23f481eacda3b8eb { 'aliquot_tag': 'ALQ_2fe99b85', 'gdc_sample_type': 'Primary Tumor' } -C3N-00580.RNA-Seq.R2_L006.A C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGATGT_S20_L006_R2_001.fastq.gz 4704423548 FASTQ R2_L006 unaligned CPTAC3 890e5c7b-13c7-45bb-9744-458dc680d92c 3e9c88ed189e1bcd5a321b0b77025e3a { 'aliquot_tag': 'ALQ_c596d574', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00580.RNA-Seq.genomic.A.hg38 C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 fb0ffae1-0a43-4c15-a94e-01b9f11cdf82.rna_seq.genomic.gdc_realn.bam 9094184406 BAM genomic harmonized CPTAC3 6e5c8d86-5fda-4263-ade7-e37f5a630081 04bbf180740a37b66a353d00c53ce55f { 'aliquot_tag': 'ALQ_c596d574', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00580.RNA-Seq.genomic.T.hg38 C3N-00580 LUAD RNA-Seq tumor CPT0069700009 7fe34327-2d33-4740-8ffc-1b7db15323bb.rna_seq.genomic.gdc_realn.bam 7270226363 BAM genomic harmonized CPTAC3 aa4bc7a3-a542-46d1-be9f-89bcbaf3a645 6dcd0e0a7674364d99ea64d1cc0f5a06 { 'aliquot_tag': 'ALQ_2fe99b85', 'gdc_sample_type': 'Primary Tumor' } +C3N-00580.RNA-Seq.R1_L003.T C3N-00580 LUAD RNA-Seq tumor CPT0069700009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTTGA_S12_L003_R1_001.fastq.gz 3566734047 FASTQ R1_L003 unaligned CPTAC3 c50c7d37-c119-4937-81ae-f49516e5ba50 85be4975c116fb485155ccf150f2bd4d { 'aliquot_tag': 'ALQ_2fe99b85', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00580.RNA-Seq.R1_L006.A C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGATGT_S20_L006_R1_001.fastq.gz 4342183966 FASTQ R1_L006 unaligned CPTAC3 e738c358-76df-42d6-b0ad-b608c5e07e41 e939556fa339d46d8ac2a2265903d4c2 { 'aliquot_tag': 'ALQ_c596d574', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00580.RNA-Seq.R2_L003.T C3N-00580 LUAD RNA-Seq tumor CPT0069700009 170828_UNC31-K00269_0077_AHLF33BBXX_ACTTGA_S12_L003_R2_001.fastq.gz 3841244008 FASTQ R2_L003 unaligned CPTAC3 83fa11c9-a986-4ad2-8037-ad8d185c0a1e efb8296aa43e419b23f481eacda3b8eb { 'aliquot_tag': 'ALQ_2fe99b85', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00580.RNA-Seq.R2_L006.A C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 171215_UNC32-K00270_0073_BHN3NFBBXX_CGATGT_S20_L006_R2_001.fastq.gz 4704423548 FASTQ R2_L006 unaligned CPTAC3 890e5c7b-13c7-45bb-9744-458dc680d92c 3e9c88ed189e1bcd5a321b0b77025e3a { 'aliquot_tag': 'ALQ_c596d574', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-00580.RNA-Seq.transcriptome.A.hg38 C3N-00580 LUAD RNA-Seq tissue_normal CPT0069720006 fb0ffae1-0a43-4c15-a94e-01b9f11cdf82.rna_seq.transcriptome.gdc_realn.bam 10708702180 BAM transcriptome harmonized CPTAC3 1e75e99d-5244-42b9-b705-627ca9b54ad8 7ead1828c2b78e83e6f3de473333ed00 { 'aliquot_tag': 'ALQ_c596d574', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00580.RNA-Seq.transcriptome.T.hg38 C3N-00580 LUAD RNA-Seq tumor CPT0069700009 7fe34327-2d33-4740-8ffc-1b7db15323bb.rna_seq.transcriptome.gdc_realn.bam 11369332850 BAM transcriptome harmonized CPTAC3 f4d7419c-00ee-417b-aeee-adf87e8a6c98 54eb2d097e557308d7a589c75f8cf5a5 { 'aliquot_tag': 'ALQ_2fe99b85', 'gdc_sample_type': 'Primary Tumor' } C3N-00580.WGS.A C3N-00580 LUAD WGS tissue_normal CPT0069720009 CPT0069720009.WholeGenome.RP-1303.bam 69666223596 BAM aligned CPTAC3 530e1699-d963-401c-a3f5-f834554d4f7c c464985187717ff6042d176f5798bff7 { 'aliquot_tag': 'ALQ_5529c8e5', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -22016,16 +23787,16 @@ C3N-00645.miRNA-Seq.A C3N-00645 SAR miRNA-Seq tissue_normal CPT0084780009 181113 C3N-00645.miRNA-Seq.A.hg38 C3N-00645 SAR miRNA-Seq tissue_normal CPT0084780009 2ff6be34-53b9-4a00-87a5-5f44a3aa92f7_mirnaseq_gdc_realn.bam 195718824 BAM harmonized CPTAC3 a9170bda-76e0-47e5-8f30-9a1b4df7d2b9 1bba877303b751955b4b30b4bf970795 { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00645.miRNA-Seq.T C3N-00645 SAR miRNA-Seq tumor CPT0084740006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTCCGC_S40_L008_R1_001.unaln.bam 255718600 BAM unaligned CPTAC3 02548837-d431-4c05-b35e-118fd5dd1c9d 435a42635bbb4db2f1eaad80e8ccc2ae { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor' } C3N-00645.miRNA-Seq.T.hg38 C3N-00645 SAR miRNA-Seq tumor CPT0084740006 40331e20-386b-4635-8636-644d07a66bcb_mirnaseq_gdc_realn.bam 280248625 BAM harmonized CPTAC3 56bc003d-02d4-4166-bedf-de760f5fb69b c4745275a6abe4d4139cde73e006c50d { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor' } -C3N-00645.RNA-Seq.chimeric.A.hg38 C3N-00645 SAR RNA-Seq tissue_normal CPT0084780009 1942387e-edb6-4da0-b251-67a5ebafdac8.rna_seq.chimeric.gdc_realn.bam 23909110 BAM chimeric harmonized CPTAC3 0ff39b3d-ecf5-4200-b563-3aa7bb63e3d1 72b07ea76fd796cf302405b2e994c30f { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00645.RNA-Seq.chimeric.T.hg38 C3N-00645 SAR RNA-Seq tumor CPT0084740006 e286fe4a-5f22-4024-a690-d0e0bc9f357e.rna_seq.chimeric.gdc_realn.bam 31892117 BAM chimeric harmonized CPTAC3 dd9ea924-bef5-46f4-bb92-9da915867db1 46b9f75ff9023184dfe32fbc69827d7a { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor' } -C3N-00645.RNA-Seq.genomic.A.hg38 C3N-00645 SAR RNA-Seq tissue_normal CPT0084780009 1942387e-edb6-4da0-b251-67a5ebafdac8.rna_seq.genomic.gdc_realn.bam 11597247528 BAM genomic harmonized CPTAC3 f1ecf176-67e0-4b8b-b905-fbf5b8affa7d cedc816ae2af384405f35cc1333416b0 { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00645.RNA-Seq.genomic.T.hg38 C3N-00645 SAR RNA-Seq tumor CPT0084740006 e286fe4a-5f22-4024-a690-d0e0bc9f357e.rna_seq.genomic.gdc_realn.bam 7138869186 BAM genomic harmonized CPTAC3 d83b9b7a-76a8-4a81-9443-d48a5389e993 c662ed6d264dc655c06df0c3640bcb64 { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor' } -C3N-00645.RNA-Seq.R1_L001.T C3N-00645 SAR RNA-Seq tumor CPT0084740006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 3411128169 FASTQ R1_L001 unaligned CPTAC3 fa6f6113-b6ee-4562-b315-cb431266aa7e 35b8ee28491be14775e664a722db5c7a { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor' } -C3N-00645.RNA-Seq.R1_L005.A C3N-00645 SAR RNA-Seq tissue_normal CPT0084780009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTGGCC_S16_L005_R1_001.fastq.gz 4044793203 FASTQ R1_L005 unaligned CPTAC3 e722ea36-fd8a-4b08-8d9d-f176c6af9bf4 aab7d2cf272257252f91f1f8d0866eb2 { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00645.RNA-Seq.R2_L001.T C3N-00645 SAR RNA-Seq tumor CPT0084740006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 3600480828 FASTQ R2_L001 unaligned CPTAC3 46583f27-736f-462b-8f9d-cfaa50e2d622 4d571e4f848fba6290ba2ef7d92184d5 { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor' } -C3N-00645.RNA-Seq.R2_L005.A C3N-00645 SAR RNA-Seq tissue_normal CPT0084780009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTGGCC_S16_L005_R2_001.fastq.gz 4384799259 FASTQ R2_L005 unaligned CPTAC3 6f38262e-e64e-4bd3-8757-86b804fe38a3 b8783fe34ec717810aeea99bb44b1d3b { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00645.RNA-Seq.transcriptome.A.hg38 C3N-00645 SAR RNA-Seq tissue_normal CPT0084780009 1942387e-edb6-4da0-b251-67a5ebafdac8.rna_seq.transcriptome.gdc_realn.bam 11353567786 BAM transcriptome harmonized CPTAC3 5999721c-5f4d-489c-9b6e-d3537fe546ac 2b5ac7becea40cfe58b23100c4ec1db9 { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00645.RNA-Seq.transcriptome.T.hg38 C3N-00645 SAR RNA-Seq tumor CPT0084740006 e286fe4a-5f22-4024-a690-d0e0bc9f357e.rna_seq.transcriptome.gdc_realn.bam 7323876149 BAM transcriptome harmonized CPTAC3 95d409f6-558c-4430-aaef-c43e22cbfc38 50e2dd73f1be86ee002de56a29a20fc6 { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor' } +C3N-00645.RNA-Seq.chimeric.A.hg38 C3N-00645 SAR RNA-Seq tissue_normal CPT0084780009 034576bb-92ba-445a-a0b8-51a9a72d11cb.rna_seq.chimeric.gdc_realn.bam 23888399 BAM chimeric harmonized CPTAC3 b5f8f9db-d26f-4320-b5a8-a69dec79c0a1 217b4cfa21336dad23d7268a38196a28 { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00645.RNA-Seq.chimeric.T.hg38 C3N-00645 SAR RNA-Seq tumor CPT0084740006 1c52fb9d-3b17-4124-bd2c-aeef43625b4b.rna_seq.chimeric.gdc_realn.bam 31876924 BAM chimeric harmonized CPTAC3 55ca9c6a-cd58-40eb-a439-90091784e492 6b3a5f4d12921b41951816c20dbd3743 { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor' } +C3N-00645.RNA-Seq.genomic.A.hg38 C3N-00645 SAR RNA-Seq tissue_normal CPT0084780009 034576bb-92ba-445a-a0b8-51a9a72d11cb.rna_seq.genomic.gdc_realn.bam 11599157870 BAM genomic harmonized CPTAC3 f6bd4526-7c65-41a5-8fa8-b16a6b5791e7 d4475808f924f4e170fa367765e310e3 { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00645.RNA-Seq.genomic.T.hg38 C3N-00645 SAR RNA-Seq tumor CPT0084740006 1c52fb9d-3b17-4124-bd2c-aeef43625b4b.rna_seq.genomic.gdc_realn.bam 7139516738 BAM genomic harmonized CPTAC3 41bee2ed-edc6-4705-af30-5537d5fc38e2 b3adacdf9ae098c7066b217f71dd25f3 { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor' } +C3N-00645.RNA-Seq.R1_L001.T C3N-00645 SAR RNA-Seq tumor CPT0084740006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 3411128169 FASTQ R1_L001 unaligned CPTAC3 fa6f6113-b6ee-4562-b315-cb431266aa7e 35b8ee28491be14775e664a722db5c7a { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00645.RNA-Seq.R1_L005.A C3N-00645 SAR RNA-Seq tissue_normal CPT0084780009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTGGCC_S16_L005_R1_001.fastq.gz 4044793203 FASTQ R1_L005 unaligned CPTAC3 e722ea36-fd8a-4b08-8d9d-f176c6af9bf4 aab7d2cf272257252f91f1f8d0866eb2 { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00645.RNA-Seq.R2_L001.T C3N-00645 SAR RNA-Seq tumor CPT0084740006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 3600480828 FASTQ R2_L001 unaligned CPTAC3 46583f27-736f-462b-8f9d-cfaa50e2d622 4d571e4f848fba6290ba2ef7d92184d5 { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00645.RNA-Seq.R2_L005.A C3N-00645 SAR RNA-Seq tissue_normal CPT0084780009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTGGCC_S16_L005_R2_001.fastq.gz 4384799259 FASTQ R2_L005 unaligned CPTAC3 6f38262e-e64e-4bd3-8757-86b804fe38a3 b8783fe34ec717810aeea99bb44b1d3b { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-00645.RNA-Seq.transcriptome.A.hg38 C3N-00645 SAR RNA-Seq tissue_normal CPT0084780009 034576bb-92ba-445a-a0b8-51a9a72d11cb.rna_seq.transcriptome.gdc_realn.bam 12242730495 BAM transcriptome harmonized CPTAC3 5917877c-ceff-4404-97d0-6b68795eae59 a07a780acf68570452004a7ee17a12d0 { 'aliquot_tag': 'ALQ_6bc4a3b6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00645.RNA-Seq.transcriptome.T.hg38 C3N-00645 SAR RNA-Seq tumor CPT0084740006 1c52fb9d-3b17-4124-bd2c-aeef43625b4b.rna_seq.transcriptome.gdc_realn.bam 8397408433 BAM transcriptome harmonized CPTAC3 5a23763c-5dfa-48af-b2e2-8e32da5f01bf 74c9694004c80ebf845df30c6a9c02a6 { 'aliquot_tag': 'ALQ_3e8b5326', 'gdc_sample_type': 'Primary Tumor' } C3N-00645.WGS.A C3N-00645 SAR WGS tissue_normal CPT0084780006 CPT0084780006.WholeGenome.RP-1303.bam 58772518928 BAM aligned CPTAC3 a71caf81-c4d4-432a-8ff1-bd1e313d7df6 29c79ac24591cc96edf666a4644f22e1 { 'aliquot_tag': 'ALQ_fb7bbe27', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00645.WGS.A.hg38 C3N-00645 SAR WGS tissue_normal CPT0084780006 d8b90ce5-c316-4fea-832c-167e1bca37a0_wgs_gdc_realn.bam 84648380633 BAM harmonized CPTAC3 ffa046fe-3dba-4453-bf8c-e48b46e1ac6e 825179c31cc0358e3879198208a69ec4 { 'aliquot_tag': 'ALQ_fb7bbe27', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00645.WGS.N C3N-00645 SAR WGS blood_normal CPT0084800002 CPT0084800002.WholeGenome.RP-1303.bam 50671546016 BAM aligned CPTAC3 2b260d2d-e646-4e0b-9ddf-b54e53fc7a38 47a6b8c7cd8af464a7513755d7707463 { 'aliquot_tag': 'ALQ_3d30832a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22041,9 +23812,9 @@ C3N-00645.WXS.T.hg38 C3N-00645 SAR WXS tumor CPT0084740009 d2f0f96f-3364-4190-80 C3N-00646.DUP_11196721.miRNA-Seq.T C3N-00646 CCRCC miRNA-Seq tumor CPT0081970006 200526_UNC32-K00270_0248_BHH7WFBBXY_CATTTT_S5_L004_R1_001.unaln.bam 327645548 BAM unaligned CPTAC3 99b94604-81ec-4d48-907e-716d1acc95af c69c388e3a3af34853965f11a3f8fd71 { 'aliquot_tag': 'DUP_11196721', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00646.DUP_11196721.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0081970006 00366798-fac0-4ca4-9a30-4e16cede240b_mirnaseq_gdc_realn.bam 361132425 BAM harmonized CPTAC3 53d12e0a-d311-4122-9ed2-3669628a5d2c d6beabb83de31e8b57bff4415dd8efc8 { 'aliquot_tag': 'DUP_11196721', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00646.DUP_11196721.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 acad9b62-0a54-4678-87ef-b4c2fcfa2910.rna_seq.chimeric.gdc_realn.bam 201061834 BAM chimeric harmonized CPTAC3 e1b2ded7-c109-412e-ad93-cc3d12ed0f0f 06996787d88f5081945bd13fc8ec8f5d { 'aliquot_tag': 'DUP_11196721', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00646.DUP_11196721.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 acad9b62-0a54-4678-87ef-b4c2fcfa2910.rna_seq.genomic.gdc_realn.bam 8344442177 BAM genomic harmonized CPTAC3 da356e1e-3806-41fe-98d9-b07cdc782b20 e025c1b1fbe53cb2b0735c30e79d139d { 'aliquot_tag': 'DUP_11196721', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00646.DUP_11196721.RNA-Seq.R1_L004.T C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 200519_UNC31-K00269_0279_AHH5VTBBXY_AGCCTCAT-AGTAGAGA_S13_L004_R1_001.fastq.gz 4092568482 FASTQ R1_L004 unaligned CPTAC3 980a3cfc-b38a-4492-ad63-75639c800e22 a7b163d7830aeb12b463ff1ebf0d0405 { 'aliquot_tag': 'DUP_11196721', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00646.DUP_11196721.RNA-Seq.R2_L004.T C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 200519_UNC31-K00269_0279_AHH5VTBBXY_AGCCTCAT-AGTAGAGA_S13_L004_R2_001.fastq.gz 4608167933 FASTQ R2_L004 unaligned CPTAC3 5774ceef-ed62-42c6-bc2e-e854e2853ef4 f0b5b332152ad17ae6637a74fcaad534 { 'aliquot_tag': 'DUP_11196721', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00646.DUP_11196721.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 acad9b62-0a54-4678-87ef-b4c2fcfa2910.rna_seq.genomic.gdc_realn.bam 8344442177 BAM genomic harmonized CPTAC3 8ea07771-646a-46fe-90fb-df4380c93891 e025c1b1fbe53cb2b0735c30e79d139d { 'aliquot_tag': 'DUP_11196721', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00646.DUP_11196721.RNA-Seq.R1_L004.T C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 200519_UNC31-K00269_0279_AHH5VTBBXY_AGCCTCAT-AGTAGAGA_S13_L004_R1_001.fastq.gz 4092568482 FASTQ R1_L004 unaligned CPTAC3 980a3cfc-b38a-4492-ad63-75639c800e22 a7b163d7830aeb12b463ff1ebf0d0405 { 'aliquot_tag': 'DUP_11196721', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3N-00646.DUP_11196721.RNA-Seq.R2_L004.T C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 200519_UNC31-K00269_0279_AHH5VTBBXY_AGCCTCAT-AGTAGAGA_S13_L004_R2_001.fastq.gz 4608167933 FASTQ R2_L004 unaligned CPTAC3 5774ceef-ed62-42c6-bc2e-e854e2853ef4 f0b5b332152ad17ae6637a74fcaad534 { 'aliquot_tag': 'DUP_11196721', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3N-00646.DUP_11196721.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081970006 acad9b62-0a54-4678-87ef-b4c2fcfa2910.rna_seq.transcriptome.gdc_realn.bam 10321705528 BAM transcriptome harmonized CPTAC3 94b32025-6b3d-44ff-8144-df6d6e1ccdf6 7f988866b8e0dec8eb6d839a54b18a4a { 'aliquot_tag': 'DUP_11196721', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00646.DUP_2561edf5.MethArray.Green.T C3N-00646 CCRCC Methylation Array tumor CPT0082000009 204367470124_R02C01_Grn.idat 13677882 IDAT Green NA CPTAC3 37b8b01b-8c19-4995-a162-6b8be926e7c9 9ac977b347812205ce2e9e88ca26b13b { 'aliquot_tag': 'DUP_2561edf5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00646.DUP_2561edf5.MethArray.Red.T C3N-00646 CCRCC Methylation Array tumor CPT0082000009 204367470124_R02C01_Red.idat 13677882 IDAT Red NA CPTAC3 9c885e48-c8a0-4c8c-9f67-898f256a2578 fa21fd146f076b42a90df5907fd2e87c { 'aliquot_tag': 'DUP_2561edf5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -22066,16 +23837,16 @@ C3N-00646.DUP_81a67ab0.WXS.T.hg38 C3N-00646 CCRCC WXS tumor CPT0081970009 692432 C3N-00646.DUP_a40a14a.miRNA-Seq.T C3N-00646 CCRCC miRNA-Seq tumor CPT0081980005 200526_UNC32-K00270_0248_BHH7WFBBXY_GGTAGC_S48_L004_R1_001.unaln.bam 289942848 BAM unaligned CPTAC3 247bcbef-5400-419f-8db8-acb8b86ade92 30c455b3d90cb4af6d08eac900ee39a3 { 'aliquot_tag': 'DUP_a40a14a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00646.DUP_a40a14a.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0081980005 952d3262-f49b-4361-9f32-697c75935506_mirnaseq_gdc_realn.bam 326665666 BAM harmonized CPTAC3 10f9d0b6-0845-4156-9b5d-8b535ea9414e f08f4da6501233a413e9e8e3e62acca9 { 'aliquot_tag': 'DUP_a40a14a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00646.DUP_a40a14a.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 2a264e7e-8b8f-454f-881d-5083ee34df0e.rna_seq.chimeric.gdc_realn.bam 106248398 BAM chimeric harmonized CPTAC3 373be1f0-c685-4241-bc38-eb2aefd7ee43 87d845d52a36bfad02e2d2ae0647ef5e { 'aliquot_tag': 'DUP_a40a14a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00646.DUP_a40a14a.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 2a264e7e-8b8f-454f-881d-5083ee34df0e.rna_seq.genomic.gdc_realn.bam 8375615893 BAM genomic harmonized CPTAC3 00fb1fe5-5e35-4807-a63a-ba636048ab02 295f46af1628bfde36f2f3085cebb00d { 'aliquot_tag': 'DUP_a40a14a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00646.DUP_a40a14a.RNA-Seq.R1_L001.T C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGAGGCC-GTTAATTG_S2_L001_R1_001.fastq.gz 3845346265 FASTQ R1_L001 unaligned CPTAC3 787e6ab3-0537-4dae-876f-591c36d1835d 1de65ffd9ea9afbe322929e0124899cd { 'aliquot_tag': 'DUP_a40a14a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00646.DUP_a40a14a.RNA-Seq.R2_L001.T C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGAGGCC-GTTAATTG_S2_L001_R2_001.fastq.gz 4730561082 FASTQ R2_L001 unaligned CPTAC3 afa8aabc-841a-4780-88bd-096696b28751 fdf932132bf3cd055a22f4aa53baf39e { 'aliquot_tag': 'DUP_a40a14a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00646.DUP_a40a14a.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 2a264e7e-8b8f-454f-881d-5083ee34df0e.rna_seq.genomic.gdc_realn.bam 8375615893 BAM genomic harmonized CPTAC3 053dedc6-4b87-48e8-bbd4-720db0966efc 295f46af1628bfde36f2f3085cebb00d { 'aliquot_tag': 'DUP_a40a14a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00646.DUP_a40a14a.RNA-Seq.R1_L001.T C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGAGGCC-GTTAATTG_S2_L001_R1_001.fastq.gz 3845346265 FASTQ R1_L001 unaligned CPTAC3 787e6ab3-0537-4dae-876f-591c36d1835d 1de65ffd9ea9afbe322929e0124899cd { 'aliquot_tag': 'DUP_a40a14a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3N-00646.DUP_a40a14a.RNA-Seq.R2_L001.T C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 200519_UNC31-K00269_0279_AHH5VTBBXY_ATGAGGCC-GTTAATTG_S2_L001_R2_001.fastq.gz 4730561082 FASTQ R2_L001 unaligned CPTAC3 afa8aabc-841a-4780-88bd-096696b28751 fdf932132bf3cd055a22f4aa53baf39e { 'aliquot_tag': 'DUP_a40a14a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3N-00646.DUP_a40a14a.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081980005 2a264e7e-8b8f-454f-881d-5083ee34df0e.rna_seq.transcriptome.gdc_realn.bam 9974597410 BAM transcriptome harmonized CPTAC3 8a7096b1-aab4-4c81-a203-ea5f4c8bc8e1 51d54ec3c3266854ea77e56efe5d9ba3 { 'aliquot_tag': 'DUP_a40a14a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00646.DUP_b5def064.miRNA-Seq.T C3N-00646 CCRCC miRNA-Seq tumor CPT0082000006 200526_UNC32-K00270_0248_BHH7WFBBXY_CCAACA_S6_L004_R1_001.unaln.bam 191987397 BAM unaligned CPTAC3 077f2974-0d74-4a69-a446-9200ffd815aa dadce38f0225e5e794c9c6f79f829cbb { 'aliquot_tag': 'DUP_b5def064', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00646.DUP_b5def064.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0082000006 4da47641-53c8-48f2-aab9-7711dd6efa14_mirnaseq_gdc_realn.bam 216197628 BAM harmonized CPTAC3 8e50ba29-1709-443e-9d9a-1c3bb742c5aa beb27dc43a27f8e7f340e11315f858e9 { 'aliquot_tag': 'DUP_b5def064', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00646.DUP_b5def064.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 bdd5845f-0c3c-4e92-b676-4aaebbdfb99d.rna_seq.chimeric.gdc_realn.bam 127443137 BAM chimeric harmonized CPTAC3 2628656b-7138-476f-80be-92e1e2ff89da bfe7e322e7bcc7ddc5d3abe9d2df231d { 'aliquot_tag': 'DUP_b5def064', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00646.DUP_b5def064.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 bdd5845f-0c3c-4e92-b676-4aaebbdfb99d.rna_seq.genomic.gdc_realn.bam 6944732932 BAM genomic harmonized CPTAC3 8b4a53d6-c406-4746-8767-394aaa9e747f b8ebd4cf9745d1d21da1dfa0a6291de6 { 'aliquot_tag': 'DUP_b5def064', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00646.DUP_b5def064.RNA-Seq.R1_L004.T C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 200519_UNC31-K00269_0279_AHH5VTBBXY_GATTCTGC-GACGAGAG_S15_L004_R1_001.fastq.gz 3334806323 FASTQ R1_L004 unaligned CPTAC3 58135a5f-972c-46ae-b682-2bceead9893f dadcb3134b1d81906b352540bd555de2 { 'aliquot_tag': 'DUP_b5def064', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00646.DUP_b5def064.RNA-Seq.R2_L004.T C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 200519_UNC31-K00269_0279_AHH5VTBBXY_GATTCTGC-GACGAGAG_S15_L004_R2_001.fastq.gz 3831563373 FASTQ R2_L004 unaligned CPTAC3 85e77e19-8680-44c9-814f-638fd0c5444e 29cf078ec0ff2f012458d7437393165e { 'aliquot_tag': 'DUP_b5def064', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00646.DUP_b5def064.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 bdd5845f-0c3c-4e92-b676-4aaebbdfb99d.rna_seq.genomic.gdc_realn.bam 6944732932 BAM genomic harmonized CPTAC3 ba426202-d168-4bb8-9938-0b55f8b89cd7 b8ebd4cf9745d1d21da1dfa0a6291de6 { 'aliquot_tag': 'DUP_b5def064', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00646.DUP_b5def064.RNA-Seq.R1_L004.T C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 200519_UNC31-K00269_0279_AHH5VTBBXY_GATTCTGC-GACGAGAG_S15_L004_R1_001.fastq.gz 3334806323 FASTQ R1_L004 unaligned CPTAC3 58135a5f-972c-46ae-b682-2bceead9893f dadcb3134b1d81906b352540bd555de2 { 'aliquot_tag': 'DUP_b5def064', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L004' } +C3N-00646.DUP_b5def064.RNA-Seq.R2_L004.T C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 200519_UNC31-K00269_0279_AHH5VTBBXY_GATTCTGC-GACGAGAG_S15_L004_R2_001.fastq.gz 3831563373 FASTQ R2_L004 unaligned CPTAC3 85e77e19-8680-44c9-814f-638fd0c5444e 29cf078ec0ff2f012458d7437393165e { 'aliquot_tag': 'DUP_b5def064', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L004' } C3N-00646.DUP_b5def064.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0082000006 bdd5845f-0c3c-4e92-b676-4aaebbdfb99d.rna_seq.transcriptome.gdc_realn.bam 9259926899 BAM transcriptome harmonized CPTAC3 2594fe19-68af-46a2-a0e2-2bba635a7f15 2add3b627f8d476d90a7e3d80f7e8f7d { 'aliquot_tag': 'DUP_b5def064', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00646.MethArray.Green.A C3N-00646 CCRCC Methylation Array tissue_normal CPT0082010009 204930640061_R02C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c2e3843a-d03e-4570-8d7f-25979fafe0cc 8909becbd4e4088c6b8a511b170dc30b { 'aliquot_tag': 'ALQ_1801c445', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00646.MethArray.Green.T C3N-00646 CCRCC Methylation Array tumor CPT0081990006 202184900111_R08C01_Grn.idat 13676246 IDAT Green NA CPTAC3 618149c4-73cf-4741-8f97-94c76712edc4 5102866a074a0f68528b3bb254727788 { 'aliquot_tag': 'ALQ_ae29d940', 'gdc_sample_type': 'Primary Tumor' } @@ -22087,12 +23858,12 @@ C3N-00646.miRNA-Seq.T C3N-00646 CCRCC miRNA-Seq tumor CPT0081990009 181113_UNC31 C3N-00646.miRNA-Seq.T.hg38 C3N-00646 CCRCC miRNA-Seq tumor CPT0081990009 73ba6cb2-5933-4c53-9012-7bccf41fb2be_mirnaseq_gdc_realn.bam 267628726 BAM harmonized CPTAC3 f839995c-6dfb-442e-a278-d0709a870eef 59eb5ba6f50463a14ae5af1a62b623cd { 'aliquot_tag': 'ALQ_3e96c4d1', 'gdc_sample_type': 'Primary Tumor' } C3N-00646.RNA-Seq.chimeric.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 9a8489e1-15e5-42f1-a825-39b7202b1b08.rna_seq.chimeric.gdc_realn.bam 63960130 BAM chimeric harmonized CPTAC3 b1f69044-a57e-404e-95d7-200466711dec 792eb47ab2b0f771c8a1e09b9d36c481 { 'aliquot_tag': 'ALQ_88bed9d4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00646.RNA-Seq.chimeric.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 aa522321-52cc-4a51-88fe-6e050a6a7560.rna_seq.chimeric.gdc_realn.bam 77721060 BAM chimeric harmonized CPTAC3 af99698d-cf6a-4b6a-b7b0-936ea8e81676 312a65c7ed9d97c9a270e9ab2638241e { 'aliquot_tag': 'ALQ_3e96c4d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00646.RNA-Seq.genomic.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 9a8489e1-15e5-42f1-a825-39b7202b1b08.rna_seq.genomic.gdc_realn.bam 8572819800 BAM genomic harmonized CPTAC3 3c411396-70b2-4493-9ff1-0c3092afd4b3 e828e7471bf613ebc63de580a8df8e0d { 'aliquot_tag': 'ALQ_88bed9d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00646.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 aa522321-52cc-4a51-88fe-6e050a6a7560.rna_seq.genomic.gdc_realn.bam 7240241221 BAM genomic harmonized CPTAC3 215ed3db-f65b-46c9-801b-8ae4cdae8b7e 0c884e8dad4038c861f95895e4aff593 { 'aliquot_tag': 'ALQ_3e96c4d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00646.RNA-Seq.R1_L001.A C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L001_R1_001.fastq.gz 4063559955 FASTQ R1_L001 unaligned CPTAC3 5b16b2e1-c184-43dd-8b14-44064ff163da a27e28e84f5db3523929a77401140bce { 'aliquot_tag': 'ALQ_88bed9d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00646.RNA-Seq.R1_L008.T C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L008_R1_001.fastq.gz 3514252397 FASTQ R1_L008 unaligned CPTAC3 5d6d5ed2-ad55-4495-98ad-1c29f1d4eae6 5d4f4640c9b399c722d024cd1525f8dd { 'aliquot_tag': 'ALQ_3e96c4d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00646.RNA-Seq.R2_L001.A C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L001_R2_001.fastq.gz 4438333168 FASTQ R2_L001 unaligned CPTAC3 85a46f67-ca77-419b-af2b-936000d066e6 13077472c88861794f700f30b27f2315 { 'aliquot_tag': 'ALQ_88bed9d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00646.RNA-Seq.R2_L008.T C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L008_R2_001.fastq.gz 3858205480 FASTQ R2_L008 unaligned CPTAC3 59f1b810-71de-45d3-9d50-96e3366fbe8f 935e6da879a1d69d92de13f90fd16f9c { 'aliquot_tag': 'ALQ_3e96c4d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00646.RNA-Seq.genomic.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 9a8489e1-15e5-42f1-a825-39b7202b1b08.rna_seq.genomic.gdc_realn.bam 8572819800 BAM genomic harmonized CPTAC3 1c07d9b7-ba7f-4e51-b94f-efc917eb584c e828e7471bf613ebc63de580a8df8e0d { 'aliquot_tag': 'ALQ_88bed9d4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00646.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 aa522321-52cc-4a51-88fe-6e050a6a7560.rna_seq.genomic.gdc_realn.bam 7240241221 BAM genomic harmonized CPTAC3 e88e9951-a013-4c34-b84c-de284309a274 0c884e8dad4038c861f95895e4aff593 { 'aliquot_tag': 'ALQ_3e96c4d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00646.RNA-Seq.R1_L001.A C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L001_R1_001.fastq.gz 4063559955 FASTQ R1_L001 unaligned CPTAC3 5b16b2e1-c184-43dd-8b14-44064ff163da a27e28e84f5db3523929a77401140bce { 'aliquot_tag': 'ALQ_88bed9d4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-00646.RNA-Seq.R1_L008.T C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L008_R1_001.fastq.gz 3514252397 FASTQ R1_L008 unaligned CPTAC3 5d6d5ed2-ad55-4495-98ad-1c29f1d4eae6 5d4f4640c9b399c722d024cd1525f8dd { 'aliquot_tag': 'ALQ_3e96c4d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00646.RNA-Seq.R2_L001.A C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L001_R2_001.fastq.gz 4438333168 FASTQ R2_L001 unaligned CPTAC3 85a46f67-ca77-419b-af2b-936000d066e6 13077472c88861794f700f30b27f2315 { 'aliquot_tag': 'ALQ_88bed9d4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-00646.RNA-Seq.R2_L008.T C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L008_R2_001.fastq.gz 3858205480 FASTQ R2_L008 unaligned CPTAC3 59f1b810-71de-45d3-9d50-96e3366fbe8f 935e6da879a1d69d92de13f90fd16f9c { 'aliquot_tag': 'ALQ_3e96c4d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00646.RNA-Seq.transcriptome.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal CPT0082010006 9a8489e1-15e5-42f1-a825-39b7202b1b08.rna_seq.transcriptome.gdc_realn.bam 9609610273 BAM transcriptome harmonized CPTAC3 7aac4c0e-4d4a-4f70-bb8d-5042c0b52bbb 1367d1b724f0447dc621b682096031d4 { 'aliquot_tag': 'ALQ_88bed9d4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00646.RNA-Seq.transcriptome.T.hg38 C3N-00646 CCRCC RNA-Seq tumor CPT0081990009 aa522321-52cc-4a51-88fe-6e050a6a7560.rna_seq.transcriptome.gdc_realn.bam 8929249617 BAM transcriptome harmonized CPTAC3 f124fd01-8dad-4b9d-b1f6-5013c217af38 8cfebd012e666e400b6725f96ff48e91 { 'aliquot_tag': 'ALQ_3e96c4d1', 'gdc_sample_type': 'Primary Tumor' } C3N-00646.WGS.A C3N-00646 CCRCC WGS tissue_normal CPT0082010009 CPT0082010009.WholeGenome.RP-1303.bam 57594115284 BAM aligned CPTAC3 e560fcb0-1c4b-4b2c-890e-e5695dae134a 4bbefa7956c7c5e5f2b8dc9fc8ddd68a { 'aliquot_tag': 'ALQ_1801c445', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -22115,16 +23886,16 @@ C3N-00647.miRNA-Seq.A C3N-00647 CCRCC miRNA-Seq tissue_normal CPT0210440009 1902 C3N-00647.miRNA-Seq.A.hg38 C3N-00647 CCRCC miRNA-Seq tissue_normal CPT0210440009 eecc143b-740f-48ca-9790-a7d2543534d2_mirnaseq_gdc_realn.bam 215764881 BAM harmonized CPTAC3 b63ecb40-7770-40cc-b835-7fd136c3a157 755e2b04dd8751f9b2210a1566374f6a { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00647.miRNA-Seq.T C3N-00647 CCRCC miRNA-Seq tumor CPT0210400008 190130_UNC31-K00269_0188_BH2FGCBBXY_CGTACG_S25_L008_R1_001.unaln.bam 315377914 BAM unaligned CPTAC3 d656b556-72bf-44f5-a889-8f714b044de5 d91e568e85e9df40cb39415e62b43867 { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor' } C3N-00647.miRNA-Seq.T.hg38 C3N-00647 CCRCC miRNA-Seq tumor CPT0210400008 52ec4fc9-1614-4ad9-9cce-dcf6b764bca8_mirnaseq_gdc_realn.bam 346673868 BAM harmonized CPTAC3 a94f362b-95d5-45f2-bfba-b0d92fb49fc6 c25ca0bfff9fa207c4b5f081c36e58f9 { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00647.RNA-Seq.chimeric.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 db93701b-ba4c-4fbc-9c02-a5ed4530af1c.rna_seq.chimeric.gdc_realn.bam 70003938 BAM chimeric harmonized CPTAC3 a76a4167-5d9c-4acf-a44f-7ec6a46095e4 b46cd755db7a2f03ddaa9f265ba269d8 { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00647.RNA-Seq.chimeric.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 0e173669-17e5-42e7-9d1b-b2369212166e.rna_seq.chimeric.gdc_realn.bam 334920742 BAM chimeric harmonized CPTAC3 64813578-79f2-4d1c-91c2-61b286d5f997 edd9a9b05eec233971c2914e22f00691 { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00647.RNA-Seq.genomic.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 db93701b-ba4c-4fbc-9c02-a5ed4530af1c.rna_seq.genomic.gdc_realn.bam 8034717958 BAM genomic harmonized CPTAC3 a1a26ae9-fd94-4af4-a332-7f39c9db1452 bc2a41d3287f9ae86c06f1fa532c6572 { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00647.RNA-Seq.genomic.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 0e173669-17e5-42e7-9d1b-b2369212166e.rna_seq.genomic.gdc_realn.bam 7209047682 BAM genomic harmonized CPTAC3 b2ad106b-9c49-4ea3-85dc-89f6c404e683 bf5dd5d874e1800b18b50f5d5b329e7a { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00647.RNA-Seq.R1_L003.A C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 190208_UNC32-K00270_0145_AH3VHMBBXY_CTTGTA_S12_L003_R1_001.fastq.gz 3870673538 FASTQ R1_L003 unaligned CPTAC3 0958c9a6-369b-446a-86c0-ecc7e7d30019 ab5fa4f25fea7ba87a2eafd91c9c342c { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00647.RNA-Seq.R1_L004.T C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 190201_UNC31-K00269_0189_AH3L7FBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3001959351 FASTQ R1_L004 unaligned CPTAC3 6ff40b7b-a248-4450-83f0-fa2d4ab953e5 3bbeee77406cf3fc074c9127d1fa3026 { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00647.RNA-Seq.R2_L003.A C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 190208_UNC32-K00270_0145_AH3VHMBBXY_CTTGTA_S12_L003_R2_001.fastq.gz 4267603425 FASTQ R2_L003 unaligned CPTAC3 686db238-4c69-4121-bfe6-1068f0b41ffb 484a2c83903861373b32a81706321c1d { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00647.RNA-Seq.R2_L004.T C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 190201_UNC31-K00269_0189_AH3L7FBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 3277118265 FASTQ R2_L004 unaligned CPTAC3 4518b250-94cf-447c-910e-a7a1d5a39dd6 5b1e5db428198e8583d15611c466dfb0 { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor' } -C3N-00647.RNA-Seq.transcriptome.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 db93701b-ba4c-4fbc-9c02-a5ed4530af1c.rna_seq.transcriptome.gdc_realn.bam 8150527742 BAM transcriptome harmonized CPTAC3 fae6747f-4fa2-4a06-a0af-efbe322f1ffc 724765e3963cecad1d8da5c5169be647 { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00647.RNA-Seq.transcriptome.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 0e173669-17e5-42e7-9d1b-b2369212166e.rna_seq.transcriptome.gdc_realn.bam 6214057579 BAM transcriptome harmonized CPTAC3 0feff1ec-238a-4b88-9bf2-48fee6301399 3fcb97638ecdbda0b91811d7dd441c94 { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00647.RNA-Seq.chimeric.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 569e9515-8f93-4c0d-9aeb-c875110f6a16.rna_seq.chimeric.gdc_realn.bam 69974739 BAM chimeric harmonized CPTAC3 a3f4c5b7-ecb7-4fb1-b9f6-e5edd37532ee 87506f61f602c4bd6554c802dbc68556 { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00647.RNA-Seq.chimeric.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 05abbe66-c560-4d97-9a98-0753f6339b3d.rna_seq.chimeric.gdc_realn.bam 334879150 BAM chimeric harmonized CPTAC3 ab6212e6-8e5f-4e35-ab0d-c4d9a02cc040 12e001451ad806558337bbbccd7087d8 { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00647.RNA-Seq.genomic.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 569e9515-8f93-4c0d-9aeb-c875110f6a16.rna_seq.genomic.gdc_realn.bam 8035826121 BAM genomic harmonized CPTAC3 efd4b1a1-6650-4cdc-a9ac-066e8fddf8dc 1e5a639e9283f324155f1538c6eaa10f { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00647.RNA-Seq.genomic.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 05abbe66-c560-4d97-9a98-0753f6339b3d.rna_seq.genomic.gdc_realn.bam 7210021290 BAM genomic harmonized CPTAC3 476a7086-5d5d-4364-bc0c-f549ef8f6175 74b621321ae16c42480bd88843a061cd { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor' } +C3N-00647.RNA-Seq.R1_L003.A C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 190208_UNC32-K00270_0145_AH3VHMBBXY_CTTGTA_S12_L003_R1_001.fastq.gz 3870673538 FASTQ R1_L003 unaligned CPTAC3 0958c9a6-369b-446a-86c0-ecc7e7d30019 ab5fa4f25fea7ba87a2eafd91c9c342c { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-00647.RNA-Seq.R1_L004.T C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 190201_UNC31-K00269_0189_AH3L7FBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3001959351 FASTQ R1_L004 unaligned CPTAC3 6ff40b7b-a248-4450-83f0-fa2d4ab953e5 3bbeee77406cf3fc074c9127d1fa3026 { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00647.RNA-Seq.R2_L003.A C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 190208_UNC32-K00270_0145_AH3VHMBBXY_CTTGTA_S12_L003_R2_001.fastq.gz 4267603425 FASTQ R2_L003 unaligned CPTAC3 686db238-4c69-4121-bfe6-1068f0b41ffb 484a2c83903861373b32a81706321c1d { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-00647.RNA-Seq.R2_L004.T C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 190201_UNC31-K00269_0189_AH3L7FBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 3277118265 FASTQ R2_L004 unaligned CPTAC3 4518b250-94cf-447c-910e-a7a1d5a39dd6 5b1e5db428198e8583d15611c466dfb0 { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00647.RNA-Seq.transcriptome.A.hg38 C3N-00647 CCRCC RNA-Seq tissue_normal CPT0210440009 569e9515-8f93-4c0d-9aeb-c875110f6a16.rna_seq.transcriptome.gdc_realn.bam 9392145456 BAM transcriptome harmonized CPTAC3 a6c33467-852d-4f2e-9f8f-6bbc4157c05e ee0fb55d0c7d21c9c81f8cd11ee8eab1 { 'aliquot_tag': 'ALQ_ed562ba7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00647.RNA-Seq.transcriptome.T.hg38 C3N-00647 CCRCC RNA-Seq tumor CPT0210400008 05abbe66-c560-4d97-9a98-0753f6339b3d.rna_seq.transcriptome.gdc_realn.bam 7078075094 BAM transcriptome harmonized CPTAC3 1310f290-d411-40f1-bc00-4e8858bb7dfa 815584c63bc80e50916fba6c3301bbf6 { 'aliquot_tag': 'ALQ_6fd1bdf1', 'gdc_sample_type': 'Primary Tumor' } C3N-00647.WGS.N C3N-00647 CCRCC WGS blood_normal CPT0210520002 CPT0210520002.WholeGenome.RP-1303.bam 60176333204 BAM aligned CPTAC3 d81b93c2-8f20-4c98-8bcc-b314e1e74bd9 63b4cce799a44b2b3d5e00ddc51ae717 { 'aliquot_tag': 'ALQ_3e98d42a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00647.WGS.N.hg38 C3N-00647 CCRCC WGS blood_normal CPT0210520002 992a2e30-9acc-44fb-96ed-e84ebe4f98f3_wgs_gdc_realn.bam 87429971417 BAM harmonized CPTAC3 aeef39b1-87b9-4242-af72-31c6a0d4682b d4f5f37c82d4b2699723dae1934161fe { 'aliquot_tag': 'ALQ_3e98d42a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00647.WGS.T C3N-00647 CCRCC WGS tumor CPT0210400010 CPT0210400010.WholeGenome.RP-1303.bam 61913507239 BAM aligned CPTAC3 9c9ee284-1e7a-4565-a7b4-ddee29eb9317 bb23daf060232de84c932032825aeb72 { 'aliquot_tag': 'ALQ_78110482', 'gdc_sample_type': 'Primary Tumor' } @@ -22136,41 +23907,77 @@ C3N-00647.WXS.N.hg38 C3N-00647 CCRCC WXS blood_normal CPT0210520002 992a2e30-9ac C3N-00647.WXS.T C3N-00647 CCRCC WXS tumor CPT0210400010 CPT0210400010.WholeExome.RP-1303.bam 25678106804 BAM aligned CPTAC3 9032cd28-050a-464c-9211-e076c994c3bd cbda42e700961248612d3b0b108ecb03 { 'aliquot_tag': 'ALQ_78110482', 'gdc_sample_type': 'Primary Tumor' } C3N-00647.WXS.T.hg38 C3N-00647 CCRCC WXS tumor CPT0210400010 adc4cdb2-337e-4f09-9dac-aed4b9566ed8_wxs_gdc_realn.bam 35378460557 BAM harmonized CPTAC3 d3a42a86-a482-4bce-a271-5ba822cc04f5 0ebebca1d7e3ed4c9ecb7b267ac033ee { 'aliquot_tag': 'ALQ_78110482', 'gdc_sample_type': 'Primary Tumor' } C3N-00651.miRNA-Seq.Tbm C3N-00651 AML miRNA-Seq tumor_bone_marrow CPT0437960002 220125_UNC32-K00270_0311_AHMNYYBBXY_CGTACG_S31_L002_R1_001.unaln.bam 286710127 BAM unaligned CPTAC3 53a14fd9-daa4-439e-a904-3b8098f8943e ad4590b65b766d90edc73e563c620710 { 'aliquot_tag': 'ALQ_4842f2e8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00651.RNA-Seq.R1_L004.Tbm C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGGACAAC-TCCGGATT_S13_L004_R1_001.fastq.gz 3593053427 FASTQ R1_L004 unaligned CPTAC3 3d2903bf-750c-414c-ae65-b73f000afdd5 ee88e0310ba9e44ac88f5aa866753483 { 'aliquot_tag': 'ALQ_4842f2e8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00651.RNA-Seq.R2_L004.Tbm C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGGACAAC-TCCGGATT_S13_L004_R2_001.fastq.gz 3851693751 FASTQ R2_L004 unaligned CPTAC3 1f438bff-6f91-4102-ba36-a6fb12ff7561 c17fcd42560043552e2838c2130ed018 { 'aliquot_tag': 'ALQ_4842f2e8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00651.miRNA-Seq.Tbm.hg38 C3N-00651 AML miRNA-Seq tumor_bone_marrow CPT0437960002 ff790ae0-7c0a-4b28-974a-ce8d90c7e2f1_mirnaseq_gdc_realn.bam 322519562 BAM harmonized CPTAC3 32aeb272-8f3c-47ab-87c6-e2ec25143b07 282605612cfa75361840e792116eb288 { 'aliquot_tag': 'ALQ_4842f2e8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00651.RNA-Seq.chimeric.Tbm.hg38 C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 6cd1df1a-0f68-4898-a58b-6769b9ed90fe.rna_seq.chimeric.gdc_realn.bam 513840253 BAM chimeric harmonized CPTAC3 c15402d2-3c02-4f0a-9b3b-4351cda7b5ff 0a424b4be57fba257ae478987d5a740b { 'aliquot_tag': 'ALQ_4842f2e8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00651.RNA-Seq.genomic.Tbm.hg38 C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 6cd1df1a-0f68-4898-a58b-6769b9ed90fe.rna_seq.genomic.gdc_realn.bam 7288669934 BAM genomic harmonized CPTAC3 95909fff-4b0d-4997-9d6c-0b2856f485a7 31d4bd81718145824e32d90214732c17 { 'aliquot_tag': 'ALQ_4842f2e8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00651.RNA-Seq.R1_L004.Tbm C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGGACAAC-TCCGGATT_S13_L004_R1_001.fastq.gz 3593053427 FASTQ R1_L004 unaligned CPTAC3 3d2903bf-750c-414c-ae65-b73f000afdd5 ee88e0310ba9e44ac88f5aa866753483 { 'aliquot_tag': 'ALQ_4842f2e8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L004' } +C3N-00651.RNA-Seq.R2_L004.Tbm C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 211207_UNC32-K00270_0306_BHMW5YBBXY_CGGACAAC-TCCGGATT_S13_L004_R2_001.fastq.gz 3851693751 FASTQ R2_L004 unaligned CPTAC3 1f438bff-6f91-4102-ba36-a6fb12ff7561 c17fcd42560043552e2838c2130ed018 { 'aliquot_tag': 'ALQ_4842f2e8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L004' } +C3N-00651.RNA-Seq.transcriptome.Tbm.hg38 C3N-00651 AML RNA-Seq tumor_bone_marrow CPT0437960002 6cd1df1a-0f68-4898-a58b-6769b9ed90fe.rna_seq.transcriptome.gdc_realn.bam 7332189722 BAM transcriptome harmonized CPTAC3 d17e1cc2-2d75-4fa5-8a0d-134dc84b5ebc 9f66e6e67221ec87ae498944da2c1259 { 'aliquot_tag': 'ALQ_4842f2e8', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00651.WGS.Tbm C3N-00651 AML WGS tumor_bone_marrow CPT0437950001 CPT0437950001.WholeGenome.RP-2158.bam 45869670373 BAM aligned CPTAC3 6b612e5c-013c-47b7-a319-7e5f4864733e c384ba33a9ac19c5c94635a046deb43f { 'aliquot_tag': 'ALQ_96ebd982', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00651.WGS.Tbm.hg38 C3N-00651 AML WGS tumor_bone_marrow CPT0437950001 a34221e5-44cf-4b5e-9ee9-a6772f2846d7_wgs_gdc_realn.bam 137483279509 BAM harmonized CPTAC3 d8f76556-392f-4379-ba91-5dcf2251c503 6346e291eaf277724b845a6c596d9669 { 'aliquot_tag': 'ALQ_96ebd982', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00651.WXS.Nbc C3N-00651 AML WXS buccal_normal CPT0435060001 CPT0435060001.WholeExome.RP-1303.bam 23777760803 BAM aligned CPTAC3 e0866eae-e86e-43cc-a85e-bfdeaecd506f 0da75ba3fe228a321f7e1f29725dc19a { 'aliquot_tag': 'ALQ_61dbe3b3', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00651.WXS.Nbc.hg38 C3N-00651 AML WXS buccal_normal CPT0435060001 342bdbdb-2148-431d-ad39-6140d9c335fa_wxs_gdc_realn.bam 32128775184 BAM harmonized CPTAC3 1a23b98c-d20b-4f53-b383-2649a57d6fd6 a544b580a051bd2d5b7d73f8cceab4f3 { 'aliquot_tag': 'ALQ_61dbe3b3', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00651.WXS.Tbm C3N-00651 AML WXS tumor_bone_marrow CPT0437950001 CPT0437950001.WholeExome.RP-1303.bam 25690540966 BAM aligned CPTAC3 b4f0dc09-b1de-4d77-88fc-aa5021f52f44 829e6fe875bccb82740b75c06efce0ef { 'aliquot_tag': 'ALQ_96ebd982', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00651.WXS.Tbm.hg38 C3N-00651 AML WXS tumor_bone_marrow CPT0437950001 a34221e5-44cf-4b5e-9ee9-a6772f2846d7_wxs_gdc_realn.bam 35473400704 BAM harmonized CPTAC3 dabeb10c-d42c-4221-846a-63824ffc31ee fe7d0d5f3b1217dec1d8971ea6563944 { 'aliquot_tag': 'ALQ_96ebd982', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00656.MethArray.Green.Tbm C3N-00656 AML Methylation Array tumor_bone_marrow CPT0438050002 205705520145_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 c4331380-5326-4ccb-adb5-623596ce0823 f3c47840788f58cf27430fdbe32f2e82 { 'aliquot_tag': 'ALQ_dea5a919', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00656.MethArray.Red.Tbm C3N-00656 AML Methylation Array tumor_bone_marrow CPT0438050002 205705520145_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 7f50ba81-921c-4bd1-852f-080be1eec208 e9c18f96de2e2d6e58c4b1a52487a489 { 'aliquot_tag': 'ALQ_dea5a919', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00656.miRNA-Seq.Tbm C3N-00656 AML miRNA-Seq tumor_bone_marrow CPT0438060002 220125_UNC32-K00270_0311_AHMNYYBBXY_GAGTGG_S33_L002_R1_001.unaln.bam 239589098 BAM unaligned CPTAC3 ecc57000-c07b-40ab-a243-1d5ff25138b1 be1245229140832dc24c10509ab75de9 { 'aliquot_tag': 'ALQ_9905d3c9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00656.RNA-Seq.R1_L005.Tbm C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATGGAT-CTGTATTA_S18_L005_R1_001.fastq.gz 3964756015 FASTQ R1_L005 unaligned CPTAC3 09c7e727-ce2c-490c-b68c-b07559b752a2 9e006fc8cc6c3e6ea479f0253d0832e4 { 'aliquot_tag': 'ALQ_9905d3c9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00656.RNA-Seq.R2_L005.Tbm C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATGGAT-CTGTATTA_S18_L005_R2_001.fastq.gz 4234313784 FASTQ R2_L005 unaligned CPTAC3 cc595190-cac9-45b0-8b20-c0155c59e122 7d0f0607ca1446facf22bade03365e29 { 'aliquot_tag': 'ALQ_9905d3c9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00656.miRNA-Seq.Tbm.hg38 C3N-00656 AML miRNA-Seq tumor_bone_marrow CPT0438060002 6208a312-cb9c-4c4d-853e-5990f808ea05_mirnaseq_gdc_realn.bam 264555353 BAM harmonized CPTAC3 68c3a49c-fac0-43ec-9e79-2a1ac95d8042 ed6680c0bf8e8614fb6140d8b78d56b5 { 'aliquot_tag': 'ALQ_9905d3c9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00656.RNA-Seq.chimeric.Tbm.hg38 C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 d3ec8dc8-f8fa-40f9-b5c7-7a6e793e240a.rna_seq.chimeric.gdc_realn.bam 696275695 BAM chimeric harmonized CPTAC3 3a090740-8c1d-4c79-bbc2-d9189f530a8f 43bf6f60a75fc0448e7e38155bf7840c { 'aliquot_tag': 'ALQ_9905d3c9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00656.RNA-Seq.genomic.Tbm.hg38 C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 d3ec8dc8-f8fa-40f9-b5c7-7a6e793e240a.rna_seq.genomic.gdc_realn.bam 7838576260 BAM genomic harmonized CPTAC3 874999a1-5ad0-4460-9587-06eb7a2fad92 831754664955affd12025b11f303b9bd { 'aliquot_tag': 'ALQ_9905d3c9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00656.RNA-Seq.R1_L005.Tbm C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATGGAT-CTGTATTA_S18_L005_R1_001.fastq.gz 3964756015 FASTQ R1_L005 unaligned CPTAC3 09c7e727-ce2c-490c-b68c-b07559b752a2 9e006fc8cc6c3e6ea479f0253d0832e4 { 'aliquot_tag': 'ALQ_9905d3c9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3N-00656.RNA-Seq.R2_L005.Tbm C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 211207_UNC32-K00270_0306_BHMW5YBBXY_ATATGGAT-CTGTATTA_S18_L005_R2_001.fastq.gz 4234313784 FASTQ R2_L005 unaligned CPTAC3 cc595190-cac9-45b0-8b20-c0155c59e122 7d0f0607ca1446facf22bade03365e29 { 'aliquot_tag': 'ALQ_9905d3c9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3N-00656.RNA-Seq.transcriptome.Tbm.hg38 C3N-00656 AML RNA-Seq tumor_bone_marrow CPT0438060002 d3ec8dc8-f8fa-40f9-b5c7-7a6e793e240a.rna_seq.transcriptome.gdc_realn.bam 8607142785 BAM transcriptome harmonized CPTAC3 e6c97390-2f06-46e9-b730-622f018ce951 d38ef8afb163bd43cf1abf464a1b18ae { 'aliquot_tag': 'ALQ_9905d3c9', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00656.WGS.Nbc C3N-00656 AML WGS buccal_normal CPT0435090001 CPT0435090001.WholeGenome.RP-2158.bam 42815516069 BAM aligned CPTAC3 e45aaa5f-c1d0-43a1-8e91-e3806a3d0fde 961ffd26ea57a8f1e00c5a8dd8a5908e { 'aliquot_tag': 'ALQ_e38b7462', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00656.WGS.Nbc.hg38 C3N-00656 AML WGS buccal_normal CPT0435090001 908d86b1-40e5-4552-a1d6-f0d745fad499_wgs_gdc_realn.bam 125888783679 BAM harmonized CPTAC3 71add2cb-73d9-4aa3-8025-8fc9a58267b4 e2a7ebe4f25c0aa32ddc6b3d4f1bc678 { 'aliquot_tag': 'ALQ_e38b7462', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00656.WGS.Tbm C3N-00656 AML WGS tumor_bone_marrow CPT0438050002 CPT0438050002.WholeGenome.RP-2158.bam 48013376646 BAM aligned CPTAC3 58a2341e-21e3-4c98-b2d5-a865cc3f454c 0a6ee4d8b9a2489c9596f21e279e61ff { 'aliquot_tag': 'ALQ_dea5a919', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00656.WGS.Tbm.hg38 C3N-00656 AML WGS tumor_bone_marrow CPT0438050002 4af4dacb-1e3d-4e55-b504-e78b2c17136a_wgs_gdc_realn.bam 143462709432 BAM harmonized CPTAC3 c0204f8e-861d-4005-a7af-9a9f9cac802a e206404f58fb8e2afbaa1aee5d0294ef { 'aliquot_tag': 'ALQ_dea5a919', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00656.WXS.Nbc C3N-00656 AML WXS buccal_normal CPT0435090001 CPT0435090001.WholeExome.RP-1303.bam 29878259424 BAM aligned CPTAC3 8f2dd230-e460-459b-b1a2-349cf170d2e6 d9bf87ddecd5c459e2cd1c969f3a04cf { 'aliquot_tag': 'ALQ_e38b7462', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00656.WXS.Nbc.hg38 C3N-00656 AML WXS buccal_normal CPT0435090001 908d86b1-40e5-4552-a1d6-f0d745fad499_wxs_gdc_realn.bam 40618481853 BAM harmonized CPTAC3 1233380f-2cb7-4050-a8e5-758c40fba5f1 5b862fff34a18eec52f9cddb8eac6561 { 'aliquot_tag': 'ALQ_e38b7462', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00656.WXS.Tbm C3N-00656 AML WXS tumor_bone_marrow CPT0438050002 CPT0438050002.WholeExome.RP-1303.bam 25709697241 BAM aligned CPTAC3 fd4c72d7-ca17-4b75-b7e3-8f72f473bca4 bd9b1362ab3529b910f491484e6614ec { 'aliquot_tag': 'ALQ_dea5a919', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00656.WXS.Tbm.hg38 C3N-00656 AML WXS tumor_bone_marrow CPT0438050002 4af4dacb-1e3d-4e55-b504-e78b2c17136a_wxs_gdc_realn.bam 89882477241 BAM harmonized CPTAC3 0b33a9ba-d8fa-4b96-8e1c-6f35463ef1eb 5769974e8c594c361268189ee9485178 { 'aliquot_tag': 'ALQ_dea5a919', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00659.MethArray.Green.Tbm C3N-00659 AML Methylation Array tumor_bone_marrow CPT0438150002 205987780153_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 b33736fa-9d06-4fe7-b2cd-d0656489d9a8 5f5bd75ffb5b39b691efe5f80fdcbdd0 { 'aliquot_tag': 'ALQ_15f97abc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00659.MethArray.Red.Tbm C3N-00659 AML Methylation Array tumor_bone_marrow CPT0438150002 205987780153_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 a4647cb5-1822-47d9-adeb-ed42f86e0a82 2882cbed54d694ac99c17341bec28311 { 'aliquot_tag': 'ALQ_15f97abc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00659.miRNA-Seq.Tbm C3N-00659 AML miRNA-Seq tumor_bone_marrow CPT0438160002 220125_UNC32-K00270_0311_AHMNYYBBXY_GGTAGC_S47_L003_R1_001.unaln.bam 210095529 BAM unaligned CPTAC3 6b68eff0-43d6-4876-9659-750bc632ea27 927f5e6e17ed0e54a7c70a9f6ac1e600 { 'aliquot_tag': 'ALQ_5259006c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00659.RNA-Seq.R1_L005.Tbm C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCAAGC-TCACGCCG_S19_L005_R1_001.fastq.gz 3738714987 FASTQ R1_L005 unaligned CPTAC3 0c8e76d2-3765-43ef-8db4-bd090133aa01 a57afd1d328320effba356a5886a2e96 { 'aliquot_tag': 'ALQ_5259006c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00659.RNA-Seq.R2_L005.Tbm C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCAAGC-TCACGCCG_S19_L005_R2_001.fastq.gz 4015190558 FASTQ R2_L005 unaligned CPTAC3 bab7c676-7656-49e6-ae18-b8d29ce221be a22ceb1c6b4501d6775449ba9cf804fe { 'aliquot_tag': 'ALQ_5259006c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00659.miRNA-Seq.Tbm.hg38 C3N-00659 AML miRNA-Seq tumor_bone_marrow CPT0438160002 d35fe2bf-897c-478c-ae53-3dc1dddf433d_mirnaseq_gdc_realn.bam 236181743 BAM harmonized CPTAC3 a6c15b1e-8ede-4f43-bb2d-044e0906e9d8 c738cb546f39fb30ef2aaf56c0029990 { 'aliquot_tag': 'ALQ_5259006c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00659.RNA-Seq.chimeric.Tbm.hg38 C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 67ff5f0c-8fe4-4584-9587-7e927d1e0a02.rna_seq.chimeric.gdc_realn.bam 668640609 BAM chimeric harmonized CPTAC3 ea48ab62-d9c0-437a-ae11-a4aaadb09074 f87de2c7ee10538d1ea19423023e6fb0 { 'aliquot_tag': 'ALQ_5259006c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00659.RNA-Seq.genomic.Tbm.hg38 C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 67ff5f0c-8fe4-4584-9587-7e927d1e0a02.rna_seq.genomic.gdc_realn.bam 7737834452 BAM genomic harmonized CPTAC3 672f2344-8119-40ea-a097-a52904d34e09 22e251422cf1589b4298fd5bda052765 { 'aliquot_tag': 'ALQ_5259006c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00659.RNA-Seq.R1_L005.Tbm C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCAAGC-TCACGCCG_S19_L005_R1_001.fastq.gz 3738714987 FASTQ R1_L005 unaligned CPTAC3 0c8e76d2-3765-43ef-8db4-bd090133aa01 a57afd1d328320effba356a5886a2e96 { 'aliquot_tag': 'ALQ_5259006c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3N-00659.RNA-Seq.R2_L005.Tbm C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 211207_UNC32-K00270_0306_BHMW5YBBXY_GCGCAAGC-TCACGCCG_S19_L005_R2_001.fastq.gz 4015190558 FASTQ R2_L005 unaligned CPTAC3 bab7c676-7656-49e6-ae18-b8d29ce221be a22ceb1c6b4501d6775449ba9cf804fe { 'aliquot_tag': 'ALQ_5259006c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3N-00659.RNA-Seq.transcriptome.Tbm.hg38 C3N-00659 AML RNA-Seq tumor_bone_marrow CPT0438160002 67ff5f0c-8fe4-4584-9587-7e927d1e0a02.rna_seq.transcriptome.gdc_realn.bam 8553665678 BAM transcriptome harmonized CPTAC3 02a654a3-f866-4170-8636-fdfcbfb80b26 6dd56ed32eea154201232f262131f7b0 { 'aliquot_tag': 'ALQ_5259006c', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00659.WGS.Nbc C3N-00659 AML WGS buccal_normal CPT0435120001 CPT0435120001.WholeGenome.RP-2158.bam 54372768330 BAM aligned CPTAC3 734560bc-c701-4ce8-9473-d4defecea828 d79e52ec1c637e001c9c6ba151d90a1e { 'aliquot_tag': 'ALQ_5f0796d6', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00659.WGS.Nbc.hg38 C3N-00659 AML WGS buccal_normal CPT0435120001 46e66d0f-898f-46b0-9102-a2fc33f7fb7e_wgs_gdc_realn.bam 160385803505 BAM harmonized CPTAC3 46eb5e4a-885c-49c1-a218-4deb4e9d2f08 9df44a99f4a12634d254b6d95b335853 { 'aliquot_tag': 'ALQ_5f0796d6', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00659.WGS.Tbm C3N-00659 AML WGS tumor_bone_marrow CPT0438150002 CPT0438150002.WholeGenome.RP-2158.bam 48310605300 BAM aligned CPTAC3 9b6326a4-e001-4aee-ad96-4d5215e2a716 540f43b591fa076e78c98b3ed3f3c29c { 'aliquot_tag': 'ALQ_15f97abc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00659.WGS.Tbm.hg38 C3N-00659 AML WGS tumor_bone_marrow CPT0438150002 4045e55e-d312-47ae-a853-1ff6f59e65d3_wgs_gdc_realn.bam 146159152536 BAM harmonized CPTAC3 6fca0608-132e-41e7-8103-0d121e45004d e115d28b36c044292e5b0fdade605559 { 'aliquot_tag': 'ALQ_15f97abc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00659.WXS.Nbc C3N-00659 AML WXS buccal_normal CPT0435120001 CPT0435120001.WholeExome.RP-1303.bam 23941692765 BAM aligned CPTAC3 c710bcd1-9b73-4d75-8028-255f8877ec70 1b58b513de1ab32e1243b23db4f5c554 { 'aliquot_tag': 'ALQ_5f0796d6', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00659.WXS.Nbc.hg38 C3N-00659 AML WXS buccal_normal CPT0435120001 46e66d0f-898f-46b0-9102-a2fc33f7fb7e_wxs_gdc_realn.bam 33227332623 BAM harmonized CPTAC3 9e7a838c-8033-4371-942f-572da8bb1aee bbbec484b4252a92aba1d6c4d3f2fb74 { 'aliquot_tag': 'ALQ_5f0796d6', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00659.WXS.Tbm C3N-00659 AML WXS tumor_bone_marrow CPT0438150002 CPT0438150002.WholeExome.RP-1303.bam 25184518788 BAM aligned CPTAC3 3ec22ec4-1c05-4873-987a-d912a6a305ff bc30183b7985570c434365a4a2fd0969 { 'aliquot_tag': 'ALQ_15f97abc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00659.WXS.Tbm.hg38 C3N-00659 AML WXS tumor_bone_marrow CPT0438150002 4045e55e-d312-47ae-a853-1ff6f59e65d3_wxs_gdc_realn.bam 35040276552 BAM harmonized CPTAC3 f7aaddb3-f740-4b16-8460-d101844bf612 ac52a5992f70d32ba6cb990a4b90e0db { 'aliquot_tag': 'ALQ_15f97abc', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00660.MethArray.Green.Tbm C3N-00660 AML Methylation Array tumor_bone_marrow CPT0383650002 205555390119_R04C01_Grn.idat 13677955 IDAT Green NA CPTAC3 ef3fe73d-28df-4305-9ab8-837a2b4270bb 30717a55c24151966f2f3f82692c0bbe { 'aliquot_tag': 'ALQ_33f06f61', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00660.MethArray.Red.Tbm C3N-00660 AML Methylation Array tumor_bone_marrow CPT0383650002 205555390119_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 ccf6cf73-7065-4baf-a920-67ab8ab3e998 bbb1827571c53642cf151a121a6684f2 { 'aliquot_tag': 'ALQ_33f06f61', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00660.miRNA-Seq.Tbm C3N-00660 AML miRNA-Seq tumor_bone_marrow CPT0383680002 210702_UNC32-K00270_0289_AHKJ22BBXY_ACTGAT_S22_L005_R1_001.unaln.bam 353218389 BAM unaligned CPTAC3 8ea51b5f-309c-4fb9-8b3b-17a0692d22b3 d9d62344733e7c511e32989d9a444970 { 'aliquot_tag': 'ALQ_cb60abd0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00660.RNA-Seq.R1_L003.Tbm C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCTGTTGG-TCGAATGG_S12_L003_R1_001.fastq.gz 4431111003 FASTQ R1_L003 unaligned CPTAC3 33eae1fa-1a21-4b09-a234-53c313f73113 029666ab4297b12c57d4f442b5ab9c13 { 'aliquot_tag': 'ALQ_cb60abd0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00660.RNA-Seq.R2_L003.Tbm C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCTGTTGG-TCGAATGG_S12_L003_R2_001.fastq.gz 4567963160 FASTQ R2_L003 unaligned CPTAC3 029b0833-f4d5-4b3f-a5ae-1ffcf2da4470 d4fc84aad7f22b1a9b6e5356bf4c7e2d { 'aliquot_tag': 'ALQ_cb60abd0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00660.miRNA-Seq.Tbm.hg38 C3N-00660 AML miRNA-Seq tumor_bone_marrow CPT0383680002 95a8c075-9128-4bde-937a-0ce5225fc0ab_mirnaseq_gdc_realn.bam 368236027 BAM harmonized CPTAC3 364f7cda-a2b8-4c1e-8725-8e401a1280c8 aaa4ecbe76cb4a9d93573f70fd95feb4 { 'aliquot_tag': 'ALQ_cb60abd0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00660.RNA-Seq.chimeric.Tbm.hg38 C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 a92f81c8-8c3f-4f3e-8f3a-761c906d0909.rna_seq.chimeric.gdc_realn.bam 294689761 BAM chimeric harmonized CPTAC3 727325f3-15cf-45e6-9a97-13387add4f16 3f212dc27acb8934d5fbe912649d4962 { 'aliquot_tag': 'ALQ_cb60abd0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00660.RNA-Seq.genomic.Tbm.hg38 C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 a92f81c8-8c3f-4f3e-8f3a-761c906d0909.rna_seq.genomic.gdc_realn.bam 9414231134 BAM genomic harmonized CPTAC3 92abdc6f-d606-44bf-899e-227f6566181d 878258a74467bb04ee21bef32fa48803 { 'aliquot_tag': 'ALQ_cb60abd0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00660.RNA-Seq.R1_L003.Tbm C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCTGTTGG-TCGAATGG_S12_L003_R1_001.fastq.gz 4431111003 FASTQ R1_L003 unaligned CPTAC3 33eae1fa-1a21-4b09-a234-53c313f73113 029666ab4297b12c57d4f442b5ab9c13 { 'aliquot_tag': 'ALQ_cb60abd0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L003' } +C3N-00660.RNA-Seq.R2_L003.Tbm C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 210708_UNC32-K00270_0290_BHLLHHBBXY_TCTGTTGG-TCGAATGG_S12_L003_R2_001.fastq.gz 4567963160 FASTQ R2_L003 unaligned CPTAC3 029b0833-f4d5-4b3f-a5ae-1ffcf2da4470 d4fc84aad7f22b1a9b6e5356bf4c7e2d { 'aliquot_tag': 'ALQ_cb60abd0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L003' } +C3N-00660.RNA-Seq.transcriptome.Tbm.hg38 C3N-00660 AML RNA-Seq tumor_bone_marrow CPT0383680002 a92f81c8-8c3f-4f3e-8f3a-761c906d0909.rna_seq.transcriptome.gdc_realn.bam 7955946068 BAM transcriptome harmonized CPTAC3 1c1fcca0-c6c1-465a-b5c5-f23e02630cc1 f1172e336ca34db5db76e5e442caeaaa { 'aliquot_tag': 'ALQ_cb60abd0', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00660.WGS.Nbc C3N-00660 AML WGS buccal_normal CPT0383750002 CPT0383750002.WholeGenome.RP-2158.bam 51684594192 BAM aligned CPTAC3 68f94f0f-fb2b-4a00-aa34-67cb5f3f72b7 2cb6548a9550f843084553091c334630 { 'aliquot_tag': 'ALQ_f8acbcc4', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00660.WGS.Nbc.hg38 C3N-00660 AML WGS buccal_normal CPT0383750002 606201ec-ba28-49e9-b880-7d209c3e763c_wgs_gdc_realn.bam 152580396100 BAM harmonized CPTAC3 6d340b8f-1f8e-4c6a-91b1-dd502378d273 6fe5e2fceab054c6ceb96bc84252b4c7 { 'aliquot_tag': 'ALQ_f8acbcc4', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00660.WGS.Tbm C3N-00660 AML WGS tumor_bone_marrow CPT0383650002 CPT0383650002.WholeGenome.RP-2158.bam 64103320954 BAM aligned CPTAC3 160cac9f-ab43-42fb-8465-44b103863f56 d9867303cf905579d6b1c1df678c983d { 'aliquot_tag': 'ALQ_33f06f61', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00660.WGS.Tbm.hg38 C3N-00660 AML WGS tumor_bone_marrow CPT0383650002 7611f0a1-875c-4387-b6b8-f1f3c3ac95ad_wgs_gdc_realn.bam 187541869233 BAM harmonized CPTAC3 f6819867-14ed-436d-aaa6-e87e5ffce392 70ebb20475be09476a5cbe960cd39258 { 'aliquot_tag': 'ALQ_33f06f61', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00660.WXS.Nbc C3N-00660 AML WXS buccal_normal CPT0383750002 CPT0383750002.WholeExome.RP-1303.bam 36751804313 BAM aligned CPTAC3 7f104952-51f3-4e51-a21b-4a494002d207 12d51f997a4efb9d6702e075a2f3c98d { 'aliquot_tag': 'ALQ_f8acbcc4', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00660.WXS.Nbc.hg38 C3N-00660 AML WXS buccal_normal CPT0383750002 606201ec-ba28-49e9-b880-7d209c3e763c_wxs_gdc_realn.bam 50418874518 BAM harmonized CPTAC3 becfee83-3d85-4f28-9613-a0c26a6613d3 16d655d3f838acc349cdc0b9573c81ae { 'aliquot_tag': 'ALQ_f8acbcc4', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00660.WXS.Tbm C3N-00660 AML WXS tumor_bone_marrow CPT0383650002 CPT0383650002.WholeExome.RP-1303.bam 23808560787 BAM aligned CPTAC3 954c782f-bb10-40be-a7ac-94f7f32f6852 304cd763f6787c8f85b8308ed941f9f3 { 'aliquot_tag': 'ALQ_33f06f61', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00660.WXS.Tbm.hg38 C3N-00660 AML WXS tumor_bone_marrow CPT0383650002 7611f0a1-875c-4387-b6b8-f1f3c3ac95ad_wxs_gdc_realn.bam 32898969714 BAM harmonized CPTAC3 e4b3a652-df94-426e-923f-ef298f0f164e a409d52e47a7217adc491d10817c1b57 { 'aliquot_tag': 'ALQ_33f06f61', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00661.MethArray.Green.T C3N-00661 GBM Methylation Array tumor CPT0087570009 202234380062_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f13b13cf-7bf6-42ad-97d1-7d4aa3f83c92 9d4082869ddcf5e27c5cacb24c080a61 { 'aliquot_tag': 'ALQ_95b48ff1', 'gdc_sample_type': 'Primary Tumor' } C3N-00661.MethArray.Red.T C3N-00661 GBM Methylation Array tumor CPT0087570009 202234380062_R01C01_Red.idat 13676231 IDAT Red NA CPTAC3 b78c7cc4-0500-44d1-9a19-09aaea5725a6 c357192e1e9df59809abd14c6a2e59fd { 'aliquot_tag': 'ALQ_95b48ff1', 'gdc_sample_type': 'Primary Tumor' } C3N-00661.miRNA-Seq.T C3N-00661 GBM miRNA-Seq tumor CPT0087570006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTGAAA_S41_L008_R1_001.unaln.bam 281999100 BAM unaligned CPTAC3 f3ca8343-4740-4ff5-99fc-5c65a6f75f9f a0107a940ea6a21006bcb3335c2dfabc { 'aliquot_tag': 'ALQ_50b9260', 'gdc_sample_type': 'Primary Tumor' } C3N-00661.miRNA-Seq.T.hg38 C3N-00661 GBM miRNA-Seq tumor CPT0087570006 7c121fc0-34ef-46f7-a7e9-88171c245852_mirnaseq_gdc_realn.bam 309676635 BAM harmonized CPTAC3 9d8b70a1-8bc1-4f71-ab05-7993726b40e3 837b3a099b273b7ff4cfb4d6048917ee { 'aliquot_tag': 'ALQ_50b9260', 'gdc_sample_type': 'Primary Tumor' } C3N-00661.RNA-Seq.chimeric.T.hg38 C3N-00661 GBM RNA-Seq tumor CPT0087570006 6dc7a729-e805-4a78-a030-f566d63d6dfa.rna_seq.chimeric.gdc_realn.bam 43149780 BAM chimeric harmonized CPTAC3 c64d4d5f-7478-4d77-bcd7-28b778e97b06 e407a2391523ef2874812a2684d75518 { 'aliquot_tag': 'ALQ_50b9260', 'gdc_sample_type': 'Primary Tumor' } C3N-00661.RNA-Seq.genomic.T.hg38 C3N-00661 GBM RNA-Seq tumor CPT0087570006 6dc7a729-e805-4a78-a030-f566d63d6dfa.rna_seq.genomic.gdc_realn.bam 8450211280 BAM genomic harmonized CPTAC3 23aa68ed-4c4c-458a-b2eb-e4428e012fd2 6ecd0c5933bc4743c18a0f076d043399 { 'aliquot_tag': 'ALQ_50b9260', 'gdc_sample_type': 'Primary Tumor' } -C3N-00661.RNA-Seq.R1_L001.T C3N-00661 GBM RNA-Seq tumor CPT0087570006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4280820344 FASTQ R1_L001 unaligned CPTAC3 0f21d54f-4e17-4dd1-8e30-aa61b33dfa23 4ea2a23896e903382a3535d636aa51eb { 'aliquot_tag': 'ALQ_50b9260', 'gdc_sample_type': 'Primary Tumor' } -C3N-00661.RNA-Seq.R2_L001.T C3N-00661 GBM RNA-Seq tumor CPT0087570006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4715271403 FASTQ R2_L001 unaligned CPTAC3 cb42cdf1-e194-4a1b-8bc8-64238ecc880b 9d1fecaea92ad9fdee5b945b6e05c302 { 'aliquot_tag': 'ALQ_50b9260', 'gdc_sample_type': 'Primary Tumor' } +C3N-00661.RNA-Seq.R1_L001.T C3N-00661 GBM RNA-Seq tumor CPT0087570006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4280820344 FASTQ R1_L001 unaligned CPTAC3 0f21d54f-4e17-4dd1-8e30-aa61b33dfa23 4ea2a23896e903382a3535d636aa51eb { 'aliquot_tag': 'ALQ_50b9260', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00661.RNA-Seq.R2_L001.T C3N-00661 GBM RNA-Seq tumor CPT0087570006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4715271403 FASTQ R2_L001 unaligned CPTAC3 cb42cdf1-e194-4a1b-8bc8-64238ecc880b 9d1fecaea92ad9fdee5b945b6e05c302 { 'aliquot_tag': 'ALQ_50b9260', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-00661.RNA-Seq.transcriptome.T.hg38 C3N-00661 GBM RNA-Seq tumor CPT0087570006 6dc7a729-e805-4a78-a030-f566d63d6dfa.rna_seq.transcriptome.gdc_realn.bam 10370390473 BAM transcriptome harmonized CPTAC3 2efe305e-8d80-4319-b9bc-c770124626c5 86714628fc93c15c51073e0759450602 { 'aliquot_tag': 'ALQ_50b9260', 'gdc_sample_type': 'Primary Tumor' } C3N-00661.WGS.N C3N-00661 GBM WGS blood_normal CPT0087650002 CPT0087650002.WholeGenome.RP-1303.bam 61808855431 BAM aligned CPTAC3 29a5aa8b-57bf-45d6-ba8a-f780e31af35d 3c94ce6c99dc21fb3ad75ea548fb5708 { 'aliquot_tag': 'ALQ_fe3277b7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00661.WGS.N.hg38 C3N-00661 GBM WGS blood_normal CPT0087650002 e997aa99-cb00-4512-ba9d-89c014720977_wgs_gdc_realn.bam 91546572846 BAM harmonized CPTAC3 f43828f2-8222-43ba-a9ba-e4fb8f7a3f1f 8e88cf3cda0860ff833819c6bc4f09a1 { 'aliquot_tag': 'ALQ_fe3277b7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22185,12 +23992,12 @@ C3N-00662.MethArray.Red.T C3N-00662 GBM Methylation Array tumor CPT0087680009 20 C3N-00662.miRNA-Seq.T C3N-00662 GBM miRNA-Seq tumor CPT0087680006 180724_UNC32-K00270_0106_BHWK3MBBXX_GTGGCC_S42_L008_R1_001.unaln.bam 253670716 BAM unaligned CPTAC3 397a556b-3625-4de4-b375-864bfb1be85d 032e39be3be271229667c2304dbc7fc3 { 'aliquot_tag': 'ALQ_1cf771f', 'gdc_sample_type': 'Primary Tumor' } C3N-00662.miRNA-Seq.T.hg38 C3N-00662 GBM miRNA-Seq tumor CPT0087680006 3fe0d587-e4a1-4505-9dac-8fd9ae352890_mirnaseq_gdc_realn.bam 278459674 BAM harmonized CPTAC3 9578dc48-9289-462b-9b3c-f575cd9dd29a 545ecf0e3dfe4b27c8f9d0a861401256 { 'aliquot_tag': 'ALQ_1cf771f', 'gdc_sample_type': 'Primary Tumor' } C3N-00662.RNA-Seq.chimeric.T.hg38 C3N-00662 GBM RNA-Seq tumor CPT0087680006 ff764b0c-5f54-4097-8db1-fd40399109b6.rna_seq.chimeric.gdc_realn.bam 38667659 BAM chimeric harmonized CPTAC3 25589ecb-2f6b-4f89-8ae7-0a09d85d33d3 6cdd7243895258850cbb788932a47e24 { 'aliquot_tag': 'ALQ_1cf771f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00662.RNA-Seq.genomic.T.hg38 C3N-00662 GBM RNA-Seq tumor CPT0087680006 ff764b0c-5f54-4097-8db1-fd40399109b6.rna_seq.genomic.gdc_realn.bam 8277945856 BAM genomic harmonized CPTAC3 7549cd16-4f6e-4784-afe2-3653a795f1de 6b3a040f95e0d9efbd222d4f3483a6e3 { 'aliquot_tag': 'ALQ_1cf771f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00662.RNA-Seq.R1_L001.T C3N-00662 GBM RNA-Seq tumor CPT0087680006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3857129343 FASTQ R1_L001 unaligned CPTAC3 fe0a5bd8-4326-43e3-83ec-db254421bb70 72a0582504c4b4a7203f71cac406767d { 'aliquot_tag': 'ALQ_1cf771f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00662.RNA-Seq.R2_L001.T C3N-00662 GBM RNA-Seq tumor CPT0087680006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 4284638564 FASTQ R2_L001 unaligned CPTAC3 661d6dae-cc63-4161-81eb-b7347bf223d0 525d9717d49c0ecd8be50a9d1c57b9bd { 'aliquot_tag': 'ALQ_1cf771f', 'gdc_sample_type': 'Primary Tumor' } +C3N-00662.RNA-Seq.genomic.T.hg38 C3N-00662 GBM RNA-Seq tumor CPT0087680006 ff764b0c-5f54-4097-8db1-fd40399109b6.rna_seq.genomic.gdc_realn.bam 8277945856 BAM genomic harmonized CPTAC3 5b2c602c-6906-4f7e-9ef7-7035569ca4f0 6b3a040f95e0d9efbd222d4f3483a6e3 { 'aliquot_tag': 'ALQ_1cf771f', 'gdc_sample_type': 'Primary Tumor' } +C3N-00662.RNA-Seq.R1_L001.T C3N-00662 GBM RNA-Seq tumor CPT0087680006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3857129343 FASTQ R1_L001 unaligned CPTAC3 fe0a5bd8-4326-43e3-83ec-db254421bb70 72a0582504c4b4a7203f71cac406767d { 'aliquot_tag': 'ALQ_1cf771f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00662.RNA-Seq.R2_L001.T C3N-00662 GBM RNA-Seq tumor CPT0087680006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 4284638564 FASTQ R2_L001 unaligned CPTAC3 661d6dae-cc63-4161-81eb-b7347bf223d0 525d9717d49c0ecd8be50a9d1c57b9bd { 'aliquot_tag': 'ALQ_1cf771f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-00662.RNA-Seq.transcriptome.T.hg38 C3N-00662 GBM RNA-Seq tumor CPT0087680006 ff764b0c-5f54-4097-8db1-fd40399109b6.rna_seq.transcriptome.gdc_realn.bam 8621409650 BAM transcriptome harmonized CPTAC3 4a6211f9-2ec9-4949-bcd1-812a98b6c101 15b149444f87b5c70759156358312fdf { 'aliquot_tag': 'ALQ_1cf771f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00662.scRNA-Seq.R1_L004.T C3N-00662 GBM scRNA-Seq tumor CPT0087680014 20191122_WUSTL_CPT0087680014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L004_R1_001.fastq.gz 14835795110 FASTQ R1_L004 unaligned CPTAC3 8d389c12-7022-49ad-96a0-d8e8f7d4f007 842d7192228a7b47e48a9f164990f1d3 { 'aliquot_tag': 'ALQ_f6da2772', 'gdc_sample_type': 'Primary Tumor' } -C3N-00662.scRNA-Seq.R2_L004.T C3N-00662 GBM scRNA-Seq tumor CPT0087680014 20191122_WUSTL_CPT0087680014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L004_R2_001.fastq.gz 33781848129 FASTQ R2_L004 unaligned CPTAC3 eec795f2-2324-4530-b7eb-eb67e5184af7 d270ef2770cea5dab7f5a401234edbbb { 'aliquot_tag': 'ALQ_f6da2772', 'gdc_sample_type': 'Primary Tumor' } +C3N-00662.scRNA-Seq.R1_L004.T C3N-00662 GBM scRNA-Seq tumor CPT0087680014 20191122_WUSTL_CPT0087680014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L004_R1_001.fastq.gz 14835795110 FASTQ R1_L004 unaligned CPTAC3 8d389c12-7022-49ad-96a0-d8e8f7d4f007 842d7192228a7b47e48a9f164990f1d3 { 'aliquot_tag': 'ALQ_f6da2772', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00662.scRNA-Seq.R2_L004.T C3N-00662 GBM scRNA-Seq tumor CPT0087680014 20191122_WUSTL_CPT0087680014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L004_R2_001.fastq.gz 33781848129 FASTQ R2_L004 unaligned CPTAC3 eec795f2-2324-4530-b7eb-eb67e5184af7 d270ef2770cea5dab7f5a401234edbbb { 'aliquot_tag': 'ALQ_f6da2772', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-00662.scRNA-Seq.T.hg38 C3N-00662 GBM scRNA-Seq tumor CPT0087680014 possorted_genome_bam.bam 33941762690 BAM harmonized CPTAC3 a12a483a-71a6-490c-b175-3373997ab5d5 d705a4fddaf3904e90b7aaee6704a1ef { 'aliquot_tag': 'ALQ_f6da2772', 'gdc_sample_type': 'Primary Tumor' } C3N-00662.WGS.N C3N-00662 GBM WGS blood_normal CPT0087720002 CPT0087720002.WholeGenome.RP-1303.bam 58036535017 BAM aligned CPTAC3 83b1d3cf-b33a-4011-88e5-41f602fc0922 b3aaa706402126ee8ec0fd5f3ead7c14 { 'aliquot_tag': 'ALQ_874e7802', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00662.WGS.N.hg38 C3N-00662 GBM WGS blood_normal CPT0087720002 8c165614-a7de-4661-b701-726d28c8ac3a_wgs_gdc_realn.bam 84160516593 BAM harmonized CPTAC3 dd1e269b-54b0-4731-a58e-dd1c5f87c097 3e2b6cf7e7ce60afd3977188a18adce2 { 'aliquot_tag': 'ALQ_874e7802', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22206,8 +24013,8 @@ C3N-00663.miRNA-Seq.T C3N-00663 GBM miRNA-Seq tumor CPT0087730006 180724_UNC32-K C3N-00663.miRNA-Seq.T.hg38 C3N-00663 GBM miRNA-Seq tumor CPT0087730006 5d973dc8-faae-4610-ae1b-007a481589ff_mirnaseq_gdc_realn.bam 260543384 BAM harmonized CPTAC3 24690bde-f455-47ba-abb5-efd664230d0e 659e9f2e9fe9b6c6bd079b9f9551ea0b { 'aliquot_tag': 'ALQ_bd4395ab', 'gdc_sample_type': 'Primary Tumor' } C3N-00663.RNA-Seq.chimeric.T.hg38 C3N-00663 GBM RNA-Seq tumor CPT0087730006 ff022aa7-0d1b-4efe-9e0e-72dd0fcd892f.rna_seq.chimeric.gdc_realn.bam 54122757 BAM chimeric harmonized CPTAC3 d47414fd-5760-4d10-8460-632b3a27d012 c79266a0c465e7fefe6c21c17cf69696 { 'aliquot_tag': 'ALQ_bd4395ab', 'gdc_sample_type': 'Primary Tumor' } C3N-00663.RNA-Seq.genomic.T.hg38 C3N-00663 GBM RNA-Seq tumor CPT0087730006 ff022aa7-0d1b-4efe-9e0e-72dd0fcd892f.rna_seq.genomic.gdc_realn.bam 9726747201 BAM genomic harmonized CPTAC3 1429f293-08ee-4638-a88e-1c349421bed0 1bb01b39ff659f67f36d93d3370ae602 { 'aliquot_tag': 'ALQ_bd4395ab', 'gdc_sample_type': 'Primary Tumor' } -C3N-00663.RNA-Seq.R1_L008.T C3N-00663 GBM RNA-Seq tumor CPT0087730006 171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R1_001.fastq.gz 4133457611 FASTQ R1_L008 unaligned CPTAC3 a81c70bb-e641-4704-9927-70d093da191b 9bebd453218c504d9f4a5e9a1dfe829f { 'aliquot_tag': 'ALQ_bd4395ab', 'gdc_sample_type': 'Primary Tumor' } -C3N-00663.RNA-Seq.R2_L008.T C3N-00663 GBM RNA-Seq tumor CPT0087730006 171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R2_001.fastq.gz 4624075046 FASTQ R2_L008 unaligned CPTAC3 88fd4df9-3f7e-43df-8e34-e5a2f62d60a9 143d9d41d8006388ec21818503b74a0f { 'aliquot_tag': 'ALQ_bd4395ab', 'gdc_sample_type': 'Primary Tumor' } +C3N-00663.RNA-Seq.R1_L008.T C3N-00663 GBM RNA-Seq tumor CPT0087730006 171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R1_001.fastq.gz 4133457611 FASTQ R1_L008 unaligned CPTAC3 a81c70bb-e641-4704-9927-70d093da191b 9bebd453218c504d9f4a5e9a1dfe829f { 'aliquot_tag': 'ALQ_bd4395ab', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00663.RNA-Seq.R2_L008.T C3N-00663 GBM RNA-Seq tumor CPT0087730006 171129_UNC32-K00270_0066_AHM25VBBXX_CGTACG_S20_L008_R2_001.fastq.gz 4624075046 FASTQ R2_L008 unaligned CPTAC3 88fd4df9-3f7e-43df-8e34-e5a2f62d60a9 143d9d41d8006388ec21818503b74a0f { 'aliquot_tag': 'ALQ_bd4395ab', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00663.RNA-Seq.transcriptome.T.hg38 C3N-00663 GBM RNA-Seq tumor CPT0087730006 ff022aa7-0d1b-4efe-9e0e-72dd0fcd892f.rna_seq.transcriptome.gdc_realn.bam 8555784894 BAM transcriptome harmonized CPTAC3 bad45859-f935-47bf-b41e-4a359b3dd730 59425f3844aa888eff9341b8b4273d20 { 'aliquot_tag': 'ALQ_bd4395ab', 'gdc_sample_type': 'Primary Tumor' } C3N-00663.WGS.N C3N-00663 GBM WGS blood_normal CPT0087810002 CPT0087810002.WholeGenome.RP-1303.bam 78686804838 BAM aligned CPTAC3 1f2be79d-4860-47bb-b2b9-4f8259146a54 32897919dae92c4a4806d3c7ed167795 { 'aliquot_tag': 'ALQ_31b8b007', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00663.WGS.N.hg38 C3N-00663 GBM WGS blood_normal CPT0087810002 a1aa3a23-f590-48d2-b559-2340afcb3e6c_wgs_gdc_realn.bam 115995719987 BAM harmonized CPTAC3 d6582bf3-3f98-46b1-a149-7997f5009bda 7c921fce47246bcdb890c068ed5ed247 { 'aliquot_tag': 'ALQ_31b8b007', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22223,8 +24030,8 @@ C3N-00665.miRNA-Seq.T C3N-00665 GBM miRNA-Seq tumor CPT0093360006 190228_UNC32-K C3N-00665.miRNA-Seq.T.hg38 C3N-00665 GBM miRNA-Seq tumor CPT0093360006 5feaef2c-c9b3-4e37-bc6c-57cb31f3c6a8_mirnaseq_gdc_realn.bam 196385122 BAM harmonized CPTAC3 436fc58e-1bbe-4f2e-a185-029cb69dca61 83a11d3faeafb31700486cfdd0877e14 { 'aliquot_tag': 'ALQ_d6d77c40', 'gdc_sample_type': 'Primary Tumor' } C3N-00665.RNA-Seq.chimeric.T.hg38 C3N-00665 GBM RNA-Seq tumor CPT0093360006 12ecbdc2-76c1-4c5a-b6e3-510d4c05785f.rna_seq.chimeric.gdc_realn.bam 34969459 BAM chimeric harmonized CPTAC3 53ade679-26ca-41fb-8feb-fa92396cd370 62c42137888402cc752b7f768457348c { 'aliquot_tag': 'ALQ_d6d77c40', 'gdc_sample_type': 'Primary Tumor' } C3N-00665.RNA-Seq.genomic.T.hg38 C3N-00665 GBM RNA-Seq tumor CPT0093360006 12ecbdc2-76c1-4c5a-b6e3-510d4c05785f.rna_seq.genomic.gdc_realn.bam 10595931691 BAM genomic harmonized CPTAC3 7de2535a-4141-4268-9545-0a93d5ce22e2 02436627fe884f8b272d57d9df2d9967 { 'aliquot_tag': 'ALQ_d6d77c40', 'gdc_sample_type': 'Primary Tumor' } -C3N-00665.RNA-Seq.R1_L004.T C3N-00665 GBM RNA-Seq tumor CPT0093360006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R1_001.fastq.gz 4574550613 FASTQ R1_L004 unaligned CPTAC3 949887f9-0e80-4e58-a463-e2f4eca6f344 accdf37184c922e952d51ba00ce528fc { 'aliquot_tag': 'ALQ_d6d77c40', 'gdc_sample_type': 'Primary Tumor' } -C3N-00665.RNA-Seq.R2_L004.T C3N-00665 GBM RNA-Seq tumor CPT0093360006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R2_001.fastq.gz 4836725837 FASTQ R2_L004 unaligned CPTAC3 3cdd04b9-24fd-4cd0-adda-92fff85b4f2e 3b8118bc60d1db3d06d148c3dd7ec5e6 { 'aliquot_tag': 'ALQ_d6d77c40', 'gdc_sample_type': 'Primary Tumor' } +C3N-00665.RNA-Seq.R1_L004.T C3N-00665 GBM RNA-Seq tumor CPT0093360006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R1_001.fastq.gz 4574550613 FASTQ R1_L004 unaligned CPTAC3 949887f9-0e80-4e58-a463-e2f4eca6f344 accdf37184c922e952d51ba00ce528fc { 'aliquot_tag': 'ALQ_d6d77c40', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00665.RNA-Seq.R2_L004.T C3N-00665 GBM RNA-Seq tumor CPT0093360006 171129_UNC32-K00270_0067_BHN2N5BBXX_CGATGT_S13_L004_R2_001.fastq.gz 4836725837 FASTQ R2_L004 unaligned CPTAC3 3cdd04b9-24fd-4cd0-adda-92fff85b4f2e 3b8118bc60d1db3d06d148c3dd7ec5e6 { 'aliquot_tag': 'ALQ_d6d77c40', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-00665.RNA-Seq.transcriptome.T.hg38 C3N-00665 GBM RNA-Seq tumor CPT0093360006 12ecbdc2-76c1-4c5a-b6e3-510d4c05785f.rna_seq.transcriptome.gdc_realn.bam 12088535916 BAM transcriptome harmonized CPTAC3 7ae2eff9-dd97-4efe-8da2-35a95803e935 a741c0596f99243c6008e33ad53d159c { 'aliquot_tag': 'ALQ_d6d77c40', 'gdc_sample_type': 'Primary Tumor' } C3N-00665.WGS.N C3N-00665 GBM WGS blood_normal CPT0093440002 CPT0093440002.WholeGenome.RP-1303.bam 67576983440 BAM aligned CPTAC3 3f8c7efb-9174-46e4-b8b9-0586934226bb ecef8f9aeeb27be537bbaa939999c00a { 'aliquot_tag': 'ALQ_b67fdb81', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00665.WGS.N.hg38 C3N-00665 GBM WGS blood_normal CPT0093440002 847e2c7e-5327-4064-a364-9e8c65bfd949_wgs_gdc_realn.bam 99580079735 BAM harmonized CPTAC3 394b7faf-cc03-4e59-a36c-01fbfba7449c fded398664740033653f225da54adc13 { 'aliquot_tag': 'ALQ_b67fdb81', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22237,30 +24044,52 @@ C3N-00665.WXS.T.hg38 C3N-00665 GBM WXS tumor CPT0093360009 f2365384-0941-41c2-83 C3N-00681.MethArray.Green.Tbm C3N-00681 AML Methylation Array tumor_bone_marrow CPT0383790001 205555380130_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 116cb0d6-b2ce-4e1f-8e56-954cc004ac53 90c72d69e8c7ae5f2016779815c5ac5d { 'aliquot_tag': 'ALQ_a455007f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00681.MethArray.Red.Tbm C3N-00681 AML Methylation Array tumor_bone_marrow CPT0383790001 205555380130_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 737bed73-8d50-45f2-8308-bbf5017f80ef b35e0860d139c83227731986204d150f { 'aliquot_tag': 'ALQ_a455007f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00681.miRNA-Seq.Tbm C3N-00681 AML miRNA-Seq tumor_bone_marrow CPT0383810002 210702_UNC32-K00270_0289_AHKJ22BBXY_ATGAGC_S23_L005_R1_001.unaln.bam 230052033 BAM unaligned CPTAC3 969e1d94-fb36-4df2-a6a9-55a8a7775518 079a94598ebf4d36986138779a57d8bd { 'aliquot_tag': 'ALQ_fc7aa8d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00681.RNA-Seq.R1_L002.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R1_001.fastq.gz 3898985323 FASTQ R1_L002 unaligned CPTAC3 182da2bf-ecc4-4df0-b857-d68da45b9a93 a3ba3b543d03119e329da6393163fc5f { 'aliquot_tag': 'ALQ_fc7aa8d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00681.RNA-Seq.R2_L002.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R2_001.fastq.gz 4170046982 FASTQ R2_L002 unaligned CPTAC3 670183c6-3c04-4e18-b129-3d104c270b33 916616b6eaf934a288e352c451896fc8 { 'aliquot_tag': 'ALQ_fc7aa8d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00681.miRNA-Seq.Tbm.hg38 C3N-00681 AML miRNA-Seq tumor_bone_marrow CPT0383810002 f7ccaf7a-4231-4a14-b1bb-d8eccaf220b9_mirnaseq_gdc_realn.bam 239831324 BAM harmonized CPTAC3 8ffbb8bb-b495-4ad2-a3eb-0e994a31e940 7c04217931da2e794a8d1924959d7be3 { 'aliquot_tag': 'ALQ_fc7aa8d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00681.RNA-Seq.chimeric.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.chimeric.gdc_realn.bam 263954949 BAM chimeric harmonized CPTAC3 0afb14bf-9dbd-411f-ba86-97ae19e84700 c6a4234504000f1857c26e681c79c5cb { 'aliquot_tag': 'ALQ_fc7aa8d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00681.RNA-Seq.genomic.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.genomic.gdc_realn.bam 7909952623 BAM genomic harmonized CPTAC3 55743065-aaf8-445c-9756-99d9edb0569c fe06eaa9635ec77e2f7cfe6aa4d037ee { 'aliquot_tag': 'ALQ_fc7aa8d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00681.RNA-Seq.R1_L002.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R1_001.fastq.gz 3898985323 FASTQ R1_L002 unaligned CPTAC3 182da2bf-ecc4-4df0-b857-d68da45b9a93 a3ba3b543d03119e329da6393163fc5f { 'aliquot_tag': 'ALQ_fc7aa8d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L002' } +C3N-00681.RNA-Seq.R2_L002.Tbm C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 210708_UNC32-K00270_0290_BHLLHHBBXY_TATCGCAC-CTTAGTGT_S8_L002_R2_001.fastq.gz 4170046982 FASTQ R2_L002 unaligned CPTAC3 670183c6-3c04-4e18-b129-3d104c270b33 916616b6eaf934a288e352c451896fc8 { 'aliquot_tag': 'ALQ_fc7aa8d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L002' } +C3N-00681.RNA-Seq.transcriptome.Tbm.hg38 C3N-00681 AML RNA-Seq tumor_bone_marrow CPT0383810002 30e89939-c3e3-4ffb-942f-6282d61b4fbe.rna_seq.transcriptome.gdc_realn.bam 9985828702 BAM transcriptome harmonized CPTAC3 31c870b1-d1b4-4eaa-8a4a-6c4b48ddb203 90ea678e248935c3a7f6672192dffd09 { 'aliquot_tag': 'ALQ_fc7aa8d1', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00681.WGS.Nbc C3N-00681 AML WGS buccal_normal CPT0383890001 CPT0383890001.WholeGenome.RP-2158.bam 52604640458 BAM aligned CPTAC3 b438557f-92dd-4ce1-a64b-47f33473e220 7bcbe2cbe3f4f288c20518cfd150d874 { 'aliquot_tag': 'ALQ_5503b2aa', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00681.WGS.Nbc.hg38 C3N-00681 AML WGS buccal_normal CPT0383890001 68519ab6-2a6e-4cb7-a3de-f648c394dc8d_wgs_gdc_realn.bam 151881801324 BAM harmonized CPTAC3 fe2d050d-a92a-42e6-925c-669ac5a858c2 520890609a11bf3fc0d4616aae48dbf5 { 'aliquot_tag': 'ALQ_5503b2aa', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00681.WGS.Tbm C3N-00681 AML WGS tumor_bone_marrow CPT0383790001 CPT0383790001.WholeGenome.RP-2158.bam 45531231345 BAM aligned CPTAC3 91a7e208-2372-4a5a-84f1-e6b99a6e9da1 d5c884268773ae91af1909a0e80135f0 { 'aliquot_tag': 'ALQ_a455007f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00681.WGS.Tbm.hg38 C3N-00681 AML WGS tumor_bone_marrow CPT0383790001 fadba10a-fe2a-41d8-bab8-4b7ba0e0f6bb_wgs_gdc_realn.bam 126787393204 BAM harmonized CPTAC3 364841e8-4076-4d6b-be96-5a384877d20e a9a8826e38a4ee46ea089aebafefd414 { 'aliquot_tag': 'ALQ_a455007f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00681.WXS.Tbm C3N-00681 AML WXS tumor_bone_marrow CPT0383790001 CPT0383790001.WholeExome.RP-1303.bam 24526942160 BAM aligned CPTAC3 80404b8c-46c8-409a-9f6c-340672d5cf8b a8ac652a6a1a931ef03a51c486a60033 { 'aliquot_tag': 'ALQ_a455007f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00681.WXS.Tbm.hg38 C3N-00681 AML WXS tumor_bone_marrow CPT0383790001 fadba10a-fe2a-41d8-bab8-4b7ba0e0f6bb_wxs_gdc_realn.bam 33867668273 BAM harmonized CPTAC3 8884afb3-86fa-4627-84f6-8ed7a62fdf5a c3734e5341471f85ecd4c282830df282 { 'aliquot_tag': 'ALQ_a455007f', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00682.MethArray.Green.Tbm C3N-00682 AML Methylation Array tumor_bone_marrow CPT0383920001 205555390164_R07C01_Grn.idat 13677955 IDAT Green NA CPTAC3 2ecf1006-16b6-4641-b03b-62a471be4d7d ad2ecedc43e8b15bd7c6f6f24f3d6a0e { 'aliquot_tag': 'ALQ_e98f501e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00682.MethArray.Red.Tbm C3N-00682 AML Methylation Array tumor_bone_marrow CPT0383920001 205555390164_R07C01_Red.idat 13677955 IDAT Red NA CPTAC3 31f361a4-a019-43a6-b791-72db9f5e6a96 da6f33abc0add124772f2e13eecc5355 { 'aliquot_tag': 'ALQ_e98f501e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00682.miRNA-Seq.Tbm C3N-00682 AML miRNA-Seq tumor_bone_marrow CPT0383930002 210702_UNC32-K00270_0289_AHKJ22BBXY_ACAGTG_S1_L001_R1_001.unaln.bam 219604258 BAM unaligned CPTAC3 a79ad700-b3b5-4787-a458-3ce0d63f49af a18ed19531635caa786a8159c848abb3 { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00682.RNA-Seq.chimeric.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.chimeric.gdc_realn.bam 51892053 BAM chimeric harmonized CPTAC3 d45c05d6-81b9-4af4-a6b5-a964968a1289 acfb28091b213531f5c6f0e66c22ba8f { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00682.RNA-Seq.genomic.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.genomic.gdc_realn.bam 7678401356 BAM genomic harmonized CPTAC3 6f61a341-a3ba-4900-9e2a-4263c82bb97e c962c2b7587ea666970f5738e6f1b5b3 { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00682.RNA-Seq.R1_L007.Tbm C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 210319_UNC31-K00269_0296_AHKT37BBXY_CAACAATG-CTTCACGG_S26_L007_R1_001.fastq.gz 3637742988 FASTQ R1_L007 unaligned CPTAC3 1e35d895-00c6-4c67-8a9a-5b05c85265d4 5d8e3181a6b9010deb98d7c5ff325f1b { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00682.RNA-Seq.R2_L007.Tbm C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 210319_UNC31-K00269_0296_AHKT37BBXY_CAACAATG-CTTCACGG_S26_L007_R2_001.fastq.gz 3818796095 FASTQ R2_L007 unaligned CPTAC3 92ed38f9-f775-446c-805f-b4ebcd834900 0dd02f218c7655c3ae880d0889c2564f { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00682.RNA-Seq.transcriptome.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.transcriptome.gdc_realn.bam 7570517637 BAM transcriptome harmonized CPTAC3 14fe94df-eb62-4359-9983-25c30e8b47bb 6da5cfe99c8cfef49bf3b1a595c44e1f { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00682.miRNA-Seq.Tbm.hg38 C3N-00682 AML miRNA-Seq tumor_bone_marrow CPT0383930002 137c87c4-85c3-4779-ae1c-817d9d47eedb_mirnaseq_gdc_realn.bam 239904287 BAM harmonized CPTAC3 39895c6e-b8aa-444f-9f9a-243af04f2c94 dc2795a31000e242154f6c6c1b88e617 { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00682.RNA-Seq.chimeric.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.chimeric.gdc_realn.bam 51892053 BAM chimeric harmonized CPTAC3 a558b8cb-94b9-40a2-a818-229a49158090 acfb28091b213531f5c6f0e66c22ba8f { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00682.RNA-Seq.genomic.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.genomic.gdc_realn.bam 7678401356 BAM genomic harmonized CPTAC3 40986da5-0fd4-4bad-9204-b4639aa2db4d c962c2b7587ea666970f5738e6f1b5b3 { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00682.RNA-Seq.R1_L007.Tbm C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 210319_UNC31-K00269_0296_AHKT37BBXY_CAACAATG-CTTCACGG_S26_L007_R1_001.fastq.gz 3637742988 FASTQ R1_L007 unaligned CPTAC3 1e35d895-00c6-4c67-8a9a-5b05c85265d4 5d8e3181a6b9010deb98d7c5ff325f1b { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L007' } +C3N-00682.RNA-Seq.R2_L007.Tbm C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 210319_UNC31-K00269_0296_AHKT37BBXY_CAACAATG-CTTCACGG_S26_L007_R2_001.fastq.gz 3818796095 FASTQ R2_L007 unaligned CPTAC3 92ed38f9-f775-446c-805f-b4ebcd834900 0dd02f218c7655c3ae880d0889c2564f { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L007' } +C3N-00682.RNA-Seq.transcriptome.Tbm.hg38 C3N-00682 AML RNA-Seq tumor_bone_marrow CPT0383930002 d154f030-4d2f-47bf-a5d1-96f94ac42824.rna_seq.transcriptome.gdc_realn.bam 7570517637 BAM transcriptome harmonized CPTAC3 931fb10a-73ac-453c-9716-1e5c64992239 6da5cfe99c8cfef49bf3b1a595c44e1f { 'aliquot_tag': 'ALQ_4de62814', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00682.WGS.Nbc C3N-00682 AML WGS buccal_normal CPT0384020001 CPT0384020001.WholeGenome.RP-2158.bam 56666429156 BAM aligned CPTAC3 29957d5c-082a-4b56-9738-a2dfcaa04728 519c92992fefd297dea742eb895a0c7e { 'aliquot_tag': 'ALQ_b273f58', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00682.WGS.Nbc.hg38 C3N-00682 AML WGS buccal_normal CPT0384020001 390d7f76-3d6f-46d1-8a88-402cb7923b53_wgs_gdc_realn.bam 165008409037 BAM harmonized CPTAC3 5c144d70-5a22-494a-95d5-184d07361a2d 77e7bb1e8a435c3b75de19b324665012 { 'aliquot_tag': 'ALQ_b273f58', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00682.WGS.Tbm C3N-00682 AML WGS tumor_bone_marrow CPT0383920001 CPT0383920001.WholeGenome.RP-2158.bam 55644554662 BAM aligned CPTAC3 8f109b2f-2044-417a-a2dc-f0cb8d6dbe97 be083b8e84c01a532010a102e3a766c4 { 'aliquot_tag': 'ALQ_e98f501e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00682.WGS.Tbm.hg38 C3N-00682 AML WGS tumor_bone_marrow CPT0383920001 cbf291d7-c6c0-42b5-8d70-ed9fbbe14345_wgs_gdc_realn.bam 156069378155 BAM harmonized CPTAC3 a9f6a226-2277-4b18-8c66-49821f0b9fc6 3ef527172af746a08ceb4f84fe5170a2 { 'aliquot_tag': 'ALQ_e98f501e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00682.WXS.Nbc C3N-00682 AML WXS buccal_normal CPT0384020001 CPT0384020001.WholeExome.RP-1303.bam 24995833086 BAM aligned CPTAC3 81bed2b3-3305-4d5d-9ed0-c45be1bed834 c5d4e1d0dd6334e3a3962b53efb9d3c3 { 'aliquot_tag': 'ALQ_b273f58', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00682.WXS.Nbc.hg38 C3N-00682 AML WXS buccal_normal CPT0384020001 390d7f76-3d6f-46d1-8a88-402cb7923b53_wxs_gdc_realn.bam 35173294973 BAM harmonized CPTAC3 ae1a9ec4-e7db-4467-bea4-d30d74abe706 0cd9d5ff9ac186017e05c99e15b3374f { 'aliquot_tag': 'ALQ_b273f58', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00682.WXS.Tbm C3N-00682 AML WXS tumor_bone_marrow CPT0383920001 CPT0383920001.WholeExome.RP-1303.bam 20157860147 BAM aligned CPTAC3 e130f1a4-bc02-4c9a-a601-734594b297e8 b26c3f497199d5ad17666571edebc1f6 { 'aliquot_tag': 'ALQ_e98f501e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00682.WXS.Tbm.hg38 C3N-00682 AML WXS tumor_bone_marrow CPT0383920001 cbf291d7-c6c0-42b5-8d70-ed9fbbe14345_wxs_gdc_realn.bam 28246981343 BAM harmonized CPTAC3 35900896-b8ed-41d0-a4b8-7c4c08293966 75039f766dbed274b7f31c7690d8b727 { 'aliquot_tag': 'ALQ_e98f501e', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00689.MethArray.Green.Tbm C3N-00689 AML Methylation Array tumor_bone_marrow CPT0438250002 205987780094_R08C01_Grn.idat 13677885 IDAT Green NA CPTAC3 05a22419-8932-431b-954c-8c689dc3a834 095767f6bddad145bc37996e65d9d65e { 'aliquot_tag': 'ALQ_936d0812', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00689.MethArray.Red.Tbm C3N-00689 AML Methylation Array tumor_bone_marrow CPT0438250002 205987780094_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 1d73e2aa-ddbd-4c26-a113-df02171b9231 a3eb7e6b2ea3671bcebeca745dfbc399 { 'aliquot_tag': 'ALQ_936d0812', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00689.miRNA-Seq.Tbm C3N-00689 AML miRNA-Seq tumor_bone_marrow CPT0438260002 220125_UNC32-K00270_0311_AHMNYYBBXY_ACTGAT_S42_L003_R1_001.unaln.bam 304601294 BAM unaligned CPTAC3 29862aaa-a254-4ba9-9c53-658f5b91310b 7c8c22db5a01db2504ba885248930f7c { 'aliquot_tag': 'ALQ_d4cd72c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00689.RNA-Seq.R1_L005.Tbm C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 211207_UNC32-K00270_0306_BHMW5YBBXY_AAGATACT-ACTTACAT_S17_L005_R1_001.fastq.gz 3452486555 FASTQ R1_L005 unaligned CPTAC3 a9fdc56b-5cdc-4b59-a7b3-037603f468e0 018ad349d0bf60db65da51840aaccf86 { 'aliquot_tag': 'ALQ_d4cd72c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } -C3N-00689.RNA-Seq.R2_L005.Tbm C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 211207_UNC32-K00270_0306_BHMW5YBBXY_AAGATACT-ACTTACAT_S17_L005_R2_001.fastq.gz 3683983306 FASTQ R2_L005 unaligned CPTAC3 739a1b27-ff73-43fe-aa21-b3005b66eb2a 36d42e58c4c002c43a0e59e1e0f05876 { 'aliquot_tag': 'ALQ_d4cd72c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00689.miRNA-Seq.Tbm.hg38 C3N-00689 AML miRNA-Seq tumor_bone_marrow CPT0438260002 a37aaa6f-debb-4b78-82f2-6d1d573edb2f_mirnaseq_gdc_realn.bam 335794153 BAM harmonized CPTAC3 c8dafe6f-9d1d-47f3-b0f8-a6687f879c8e 5beb3cf9882df2359565e0abb6c82285 { 'aliquot_tag': 'ALQ_d4cd72c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00689.RNA-Seq.chimeric.Tbm.hg38 C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 eaf67484-bd1c-4422-a56b-2174e48334a5.rna_seq.chimeric.gdc_realn.bam 657599802 BAM chimeric harmonized CPTAC3 e3952f8f-f46a-43d3-80db-c67da6e34b6f 1cea6de061e97ab79b4bb96c30f40148 { 'aliquot_tag': 'ALQ_d4cd72c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00689.RNA-Seq.genomic.Tbm.hg38 C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 eaf67484-bd1c-4422-a56b-2174e48334a5.rna_seq.genomic.gdc_realn.bam 7015130554 BAM genomic harmonized CPTAC3 5dbabb6e-0ee6-4c70-9778-64eef18053df 0bfcb1917b1450889ae370c8ed360350 { 'aliquot_tag': 'ALQ_d4cd72c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00689.RNA-Seq.R1_L005.Tbm C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 211207_UNC32-K00270_0306_BHMW5YBBXY_AAGATACT-ACTTACAT_S17_L005_R1_001.fastq.gz 3452486555 FASTQ R1_L005 unaligned CPTAC3 a9fdc56b-5cdc-4b59-a7b3-037603f468e0 018ad349d0bf60db65da51840aaccf86 { 'aliquot_tag': 'ALQ_d4cd72c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R1', 'lane': 'L005' } +C3N-00689.RNA-Seq.R2_L005.Tbm C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 211207_UNC32-K00270_0306_BHMW5YBBXY_AAGATACT-ACTTACAT_S17_L005_R2_001.fastq.gz 3683983306 FASTQ R2_L005 unaligned CPTAC3 739a1b27-ff73-43fe-aa21-b3005b66eb2a 36d42e58c4c002c43a0e59e1e0f05876 { 'aliquot_tag': 'ALQ_d4cd72c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow', 'read': 'R2', 'lane': 'L005' } +C3N-00689.RNA-Seq.transcriptome.Tbm.hg38 C3N-00689 AML RNA-Seq tumor_bone_marrow CPT0438260002 eaf67484-bd1c-4422-a56b-2174e48334a5.rna_seq.transcriptome.gdc_realn.bam 7776794318 BAM transcriptome harmonized CPTAC3 faccae86-e63a-4e6d-a01f-b73db3ba96a6 be4353e71d19aed4305dc214a6bfe537 { 'aliquot_tag': 'ALQ_d4cd72c2', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00689.WGS.Nbc C3N-00689 AML WGS buccal_normal CPT0435150001 CPT0435150001.WholeGenome.RP-2158.bam 46776921036 BAM aligned CPTAC3 968bbd86-c780-4595-a775-c8285c21cb79 7f1254ac0b243d3278208620b0356036 { 'aliquot_tag': 'ALQ_ed274ac6', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00689.WGS.Nbc.hg38 C3N-00689 AML WGS buccal_normal CPT0435150001 3e005f75-512b-468f-8f30-ca4283ae0e13_wgs_gdc_realn.bam 138205153404 BAM harmonized CPTAC3 878e413b-ef66-45a3-98c4-bc1c3dbf53cc eb4c949ccd62d8e37a21f90bb335f716 { 'aliquot_tag': 'ALQ_ed274ac6', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00689.WGS.Tbm C3N-00689 AML WGS tumor_bone_marrow CPT0438250002 CPT0438250002.WholeGenome.RP-2158.bam 49118752290 BAM aligned CPTAC3 6dfed537-9932-46dc-8355-3b1f99e6888f d99d72ec138e20354f4845062bc33387 { 'aliquot_tag': 'ALQ_936d0812', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00689.WGS.Tbm.hg38 C3N-00689 AML WGS tumor_bone_marrow CPT0438250002 800a32d7-4f29-47af-8903-0cc0f3986c20_wgs_gdc_realn.bam 145848709846 BAM harmonized CPTAC3 d67370bf-7944-4bb2-91a5-ada579ec1bdd ba96137d65256eaf75b79e47ebadedf8 { 'aliquot_tag': 'ALQ_936d0812', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00689.WXS.Nbc C3N-00689 AML WXS buccal_normal CPT0435150001 CPT0435150001.WholeExome.RP-1303.bam 30488196099 BAM aligned CPTAC3 2c97939c-7a4b-4418-95a0-a7ebf4bcc91b 036486c893ab53c66452d8be990b793e { 'aliquot_tag': 'ALQ_ed274ac6', 'gdc_sample_type': 'Buccal Cell Normal' } +C3N-00689.WXS.Nbc.hg38 C3N-00689 AML WXS buccal_normal CPT0435150001 3e005f75-512b-468f-8f30-ca4283ae0e13_wxs_gdc_realn.bam 41415472428 BAM harmonized CPTAC3 04ff8cce-e24b-4214-b284-4556cd134563 eb29c607b5696a76f79595d77ae94b03 { 'aliquot_tag': 'ALQ_ed274ac6', 'gdc_sample_type': 'Buccal Cell Normal' } C3N-00689.WXS.Tbm C3N-00689 AML WXS tumor_bone_marrow CPT0438250002 CPT0438250002.WholeExome.RP-1303.bam 23697314874 BAM aligned CPTAC3 a1cce6b2-69a2-4eba-a610-7f59b42871a5 60b3cf312b55d3aad2c5718160609fdf { 'aliquot_tag': 'ALQ_936d0812', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } +C3N-00689.WXS.Tbm.hg38 C3N-00689 AML WXS tumor_bone_marrow CPT0438250002 800a32d7-4f29-47af-8903-0cc0f3986c20_wxs_gdc_realn.bam 32612454502 BAM harmonized CPTAC3 66fd07ec-bae8-440b-9f6d-5604342a87b2 aaf1f19b38a91220fa9c48ab09da1e88 { 'aliquot_tag': 'ALQ_936d0812', 'gdc_sample_type': 'Primary Blood Derived Cancer - Bone Marrow' } C3N-00704.MethArray.Green.T C3N-00704 LUAD Methylation Array tumor CPT0055100010 202178770100_R08C01_Grn.idat 13676231 IDAT Green NA CPTAC3 0f140af5-499e-460f-a4ad-d175749f611b ed97abd8bee666a2a7cf02b5a3c4a4b1 { 'aliquot_tag': 'ALQ_d0589cea', 'gdc_sample_type': 'Primary Tumor' } C3N-00704.MethArray.Red.T C3N-00704 LUAD Methylation Array tumor CPT0055100010 202178770100_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 0998b752-5a40-4c98-b761-76a3be029adf 3044d38a9640c6f33f2460262b0b69cf { 'aliquot_tag': 'ALQ_d0589cea', 'gdc_sample_type': 'Primary Tumor' } C3N-00704.miRNA-Seq.A C3N-00704 LUAD miRNA-Seq tissue_normal CPT0062810006 181108_UNC31-K00269_0162_AH255GBBXY_ATCACG_S25_L008_R1_001.unaln.bam 270678937 BAM unaligned CPTAC3 c6a5e772-e18c-4da9-91ae-945a6d5630e9 54fd80f14ada5fd74140aeba19040c8d { 'aliquot_tag': 'ALQ_7167498b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -22269,12 +24098,12 @@ C3N-00704.miRNA-Seq.T C3N-00704 LUAD miRNA-Seq tumor CPT0055100014 181012_UNC32- C3N-00704.miRNA-Seq.T.hg38 C3N-00704 LUAD miRNA-Seq tumor CPT0055100014 e2d60703-5988-4131-9b7f-8934bc0d074b_mirnaseq_gdc_realn.bam 278558223 BAM harmonized CPTAC3 07fae150-4f75-4823-9663-5d1971ec07c5 d7aed7177d31043cfe2983a8a92f96e0 { 'aliquot_tag': 'ALQ_d73558f3', 'gdc_sample_type': 'Primary Tumor' } C3N-00704.RNA-Seq.chimeric.A.hg38 C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 cdbc6d96-7ec7-404e-8fc6-548738185379.rna_seq.chimeric.gdc_realn.bam 65312364 BAM chimeric harmonized CPTAC3 960e594c-64e3-4440-901f-b7461e17b19f 6bd2c55c5143571b1bec81c378c68a4d { 'aliquot_tag': 'ALQ_7167498b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00704.RNA-Seq.chimeric.T.hg38 C3N-00704 LUAD RNA-Seq tumor CPT0055100014 bc79f5b3-0a60-4468-a719-1a30a49bbd75.rna_seq.chimeric.gdc_realn.bam 187944043 BAM chimeric harmonized CPTAC3 d83945e2-031a-4f3f-b0e5-deccd47770c2 8773f12fd5b592dad71812378e58354e { 'aliquot_tag': 'ALQ_d73558f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00704.RNA-Seq.genomic.A.hg38 C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 cdbc6d96-7ec7-404e-8fc6-548738185379.rna_seq.genomic.gdc_realn.bam 8165383094 BAM genomic harmonized CPTAC3 8ec15b1d-d963-4709-9154-ab5ccb2eba47 bf0d2ff6779d5c4f7826dfb67b8bbf08 { 'aliquot_tag': 'ALQ_7167498b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00704.RNA-Seq.genomic.T.hg38 C3N-00704 LUAD RNA-Seq tumor CPT0055100014 bc79f5b3-0a60-4468-a719-1a30a49bbd75.rna_seq.genomic.gdc_realn.bam 7048376666 BAM genomic harmonized CPTAC3 3ac31c75-384d-4758-a59d-0c05d170237a 44b61f1554c9df132e5efa56afe5cfeb { 'aliquot_tag': 'ALQ_d73558f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00704.RNA-Seq.R1_L003.A C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R1_001.fastq.gz 3868831519 FASTQ R1_L003 unaligned CPTAC3 84daa27c-2280-4bc2-b098-3ebe90dc4985 f3cd8e131403c7bbe33ba45313be2526 { 'aliquot_tag': 'ALQ_7167498b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00704.RNA-Seq.R1_L005.T C3N-00704 LUAD RNA-Seq tumor CPT0055100014 170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R1_001.fastq.gz 3615965972 FASTQ R1_L005 unaligned CPTAC3 a5373c83-5859-4af0-9cc8-d3362f26794b a2fbbea5d08fe67fe757ad329fe7b3f3 { 'aliquot_tag': 'ALQ_d73558f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00704.RNA-Seq.R2_L003.A C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R2_001.fastq.gz 3700937499 FASTQ R2_L003 unaligned CPTAC3 8d8a3157-9d5b-4941-9d37-a4c2856b1bfd 7213bd19d363112ecc5858ca38a7004d { 'aliquot_tag': 'ALQ_7167498b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00704.RNA-Seq.R2_L005.T C3N-00704 LUAD RNA-Seq tumor CPT0055100014 170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R2_001.fastq.gz 3966919848 FASTQ R2_L005 unaligned CPTAC3 739f05f6-8611-4727-9603-118166c1ad30 599d9b830453cc83fa377913224a371d { 'aliquot_tag': 'ALQ_d73558f3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00704.RNA-Seq.genomic.A.hg38 C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 cdbc6d96-7ec7-404e-8fc6-548738185379.rna_seq.genomic.gdc_realn.bam 8165383094 BAM genomic harmonized CPTAC3 a9e7a8e8-8595-494c-8a6f-41dafb0a7064 bf0d2ff6779d5c4f7826dfb67b8bbf08 { 'aliquot_tag': 'ALQ_7167498b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00704.RNA-Seq.genomic.T.hg38 C3N-00704 LUAD RNA-Seq tumor CPT0055100014 bc79f5b3-0a60-4468-a719-1a30a49bbd75.rna_seq.genomic.gdc_realn.bam 7048376666 BAM genomic harmonized CPTAC3 444119f1-e698-45f7-a706-1b3250f82d09 44b61f1554c9df132e5efa56afe5cfeb { 'aliquot_tag': 'ALQ_d73558f3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00704.RNA-Seq.R1_L003.A C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R1_001.fastq.gz 3868831519 FASTQ R1_L003 unaligned CPTAC3 84daa27c-2280-4bc2-b098-3ebe90dc4985 f3cd8e131403c7bbe33ba45313be2526 { 'aliquot_tag': 'ALQ_7167498b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-00704.RNA-Seq.R1_L005.T C3N-00704 LUAD RNA-Seq tumor CPT0055100014 170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R1_001.fastq.gz 3615965972 FASTQ R1_L005 unaligned CPTAC3 a5373c83-5859-4af0-9cc8-d3362f26794b a2fbbea5d08fe67fe757ad329fe7b3f3 { 'aliquot_tag': 'ALQ_d73558f3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00704.RNA-Seq.R2_L003.A C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 171215_UNC32-K00270_0072_AHN3THBBXX_ATCACG_S10_L003_R2_001.fastq.gz 3700937499 FASTQ R2_L003 unaligned CPTAC3 8d8a3157-9d5b-4941-9d37-a4c2856b1bfd 7213bd19d363112ecc5858ca38a7004d { 'aliquot_tag': 'ALQ_7167498b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-00704.RNA-Seq.R2_L005.T C3N-00704 LUAD RNA-Seq tumor CPT0055100014 170905_UNC31-K00269_0079_AHLCF7BBXX_CAGATC_S17_L005_R2_001.fastq.gz 3966919848 FASTQ R2_L005 unaligned CPTAC3 739f05f6-8611-4727-9603-118166c1ad30 599d9b830453cc83fa377913224a371d { 'aliquot_tag': 'ALQ_d73558f3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00704.RNA-Seq.transcriptome.A.hg38 C3N-00704 LUAD RNA-Seq tissue_normal CPT0062810006 cdbc6d96-7ec7-404e-8fc6-548738185379.rna_seq.transcriptome.gdc_realn.bam 9340486991 BAM transcriptome harmonized CPTAC3 90027eca-c4c5-40a1-b4cf-119760dde5ec 9eb3eac255425d3cbea669059db682cd { 'aliquot_tag': 'ALQ_7167498b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00704.RNA-Seq.transcriptome.T.hg38 C3N-00704 LUAD RNA-Seq tumor CPT0055100014 bc79f5b3-0a60-4468-a719-1a30a49bbd75.rna_seq.transcriptome.gdc_realn.bam 9688332235 BAM transcriptome harmonized CPTAC3 8bb561e0-4e4b-4aea-b8db-94bb0f1ac23d fd6b7683d1837ee88f4a0f5fea95b1bd { 'aliquot_tag': 'ALQ_d73558f3', 'gdc_sample_type': 'Primary Tumor' } C3N-00704.WGS.N C3N-00704 LUAD WGS blood_normal CPT0062910002 CPT0062910002.WholeGenome.RP-1303.bam 72481397542 BAM aligned CPTAC3 52bb15e1-f2c0-4f67-a359-009e9942b34c 09325c87b5d24a51784d9133427226af { 'aliquot_tag': 'ALQ_bd565e37', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22290,9 +24119,9 @@ C3N-00709.MethArray.Red.T C3N-00709 PDA Methylation Array tumor CPT0203850007 20 C3N-00709.miRNA-Seq.T C3N-00709 PDA miRNA-Seq tumor CPT0203850010 190712_UNC32-K00270_0192_BH7HL3BBXY_TGACCA_S27_L005_R1_001.unaln.bam 150926385 BAM unaligned CPTAC3 f6fa144b-bcb9-4962-8ae9-02531a7c3cbb 4d193e8326a07b86c3aa82c54615707e { 'aliquot_tag': 'ALQ_3a71518a', 'gdc_sample_type': 'Primary Tumor' } C3N-00709.miRNA-Seq.T.hg38 C3N-00709 PDA miRNA-Seq tumor CPT0203850010 cd9afa58-a602-44f1-8bf9-462a17f8f0fd_mirnaseq_gdc_realn.bam 167139008 BAM harmonized CPTAC3 71edf6d8-e671-4c63-9edf-eda188e39b9c 3d551818757789c554d21efdd3061b70 { 'aliquot_tag': 'ALQ_3a71518a', 'gdc_sample_type': 'Primary Tumor' } C3N-00709.RNA-Seq.chimeric.T.hg38 C3N-00709 PDA RNA-Seq tumor CPT0203850010 16ee6454-8ab3-42f6-9576-e03215c4d70a.rna_seq.chimeric.gdc_realn.bam 37275220 BAM chimeric harmonized CPTAC3 fb76ae6a-3ea2-4cf7-80b0-74ba63299038 6d360f5e0619abc6734430ef52f44627 { 'aliquot_tag': 'ALQ_3a71518a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00709.RNA-Seq.genomic.T.hg38 C3N-00709 PDA RNA-Seq tumor CPT0203850010 16ee6454-8ab3-42f6-9576-e03215c4d70a.rna_seq.genomic.gdc_realn.bam 8853054213 BAM genomic harmonized CPTAC3 39d31e1f-8586-4f1a-93b6-b6e042dcd6b9 3962484d1a82e1f9d92aa27200b21c33 { 'aliquot_tag': 'ALQ_3a71518a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00709.RNA-Seq.R1_L008.T C3N-00709 PDA RNA-Seq tumor CPT0203850010 190621_UNC32-K00270_0185_BH7G72BBXY_GGTGAACC-GCGTTGGA_S29_L008_R1_001.fastq.gz 3992326363 FASTQ R1_L008 unaligned CPTAC3 5533af10-acc9-4398-b820-c8b135255a5b 8a85be56b9855828c5b74ee2ed670784 { 'aliquot_tag': 'ALQ_3a71518a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00709.RNA-Seq.R2_L008.T C3N-00709 PDA RNA-Seq tumor CPT0203850010 190621_UNC32-K00270_0185_BH7G72BBXY_GGTGAACC-GCGTTGGA_S29_L008_R2_001.fastq.gz 4192854035 FASTQ R2_L008 unaligned CPTAC3 eba68b0b-e839-4a33-b3bc-c00412f3fe80 d8919fbc8f094222c2b7eb9ef6e7b7d6 { 'aliquot_tag': 'ALQ_3a71518a', 'gdc_sample_type': 'Primary Tumor' } +C3N-00709.RNA-Seq.genomic.T.hg38 C3N-00709 PDA RNA-Seq tumor CPT0203850010 16ee6454-8ab3-42f6-9576-e03215c4d70a.rna_seq.genomic.gdc_realn.bam 8853054213 BAM genomic harmonized CPTAC3 a0092ac9-bf74-4e30-9821-504d5d4ea3fb 3962484d1a82e1f9d92aa27200b21c33 { 'aliquot_tag': 'ALQ_3a71518a', 'gdc_sample_type': 'Primary Tumor' } +C3N-00709.RNA-Seq.R1_L008.T C3N-00709 PDA RNA-Seq tumor CPT0203850010 190621_UNC32-K00270_0185_BH7G72BBXY_GGTGAACC-GCGTTGGA_S29_L008_R1_001.fastq.gz 3992326363 FASTQ R1_L008 unaligned CPTAC3 5533af10-acc9-4398-b820-c8b135255a5b 8a85be56b9855828c5b74ee2ed670784 { 'aliquot_tag': 'ALQ_3a71518a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00709.RNA-Seq.R2_L008.T C3N-00709 PDA RNA-Seq tumor CPT0203850010 190621_UNC32-K00270_0185_BH7G72BBXY_GGTGAACC-GCGTTGGA_S29_L008_R2_001.fastq.gz 4192854035 FASTQ R2_L008 unaligned CPTAC3 eba68b0b-e839-4a33-b3bc-c00412f3fe80 d8919fbc8f094222c2b7eb9ef6e7b7d6 { 'aliquot_tag': 'ALQ_3a71518a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00709.RNA-Seq.transcriptome.T.hg38 C3N-00709 PDA RNA-Seq tumor CPT0203850010 16ee6454-8ab3-42f6-9576-e03215c4d70a.rna_seq.transcriptome.gdc_realn.bam 8793450187 BAM transcriptome harmonized CPTAC3 bffbc6d8-ef77-4c54-a872-808fc52e25ca 67588c01a4029b988de55ca338ff5367 { 'aliquot_tag': 'ALQ_3a71518a', 'gdc_sample_type': 'Primary Tumor' } C3N-00709.WGS.N C3N-00709 PDA WGS blood_normal CPT0203890002 CPT0203890002.WholeGenome.RP-1303.bam 59448793303 BAM aligned CPTAC3 9c1818c0-eafb-4c5c-b2c9-c8e3aa94fc86 f83fd1944bea82452ce8c860e18090b2 { 'aliquot_tag': 'ALQ_894ece6', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00709.WGS.N.hg38 C3N-00709 PDA WGS blood_normal CPT0203890002 63f3b721-9c0d-4e06-99d0-d5dd1df27ba4_wgs_gdc_realn.bam 85927451284 BAM harmonized CPTAC3 d9d988fc-80c7-4eb3-894f-4696dcf881de f667361efd2fc04d17871cbc2f2cd150 { 'aliquot_tag': 'ALQ_894ece6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22310,16 +24139,16 @@ C3N-00715.miRNA-Seq.A C3N-00715 CCRCC miRNA-Seq tissue_normal CPT0203940009 1901 C3N-00715.miRNA-Seq.A.hg38 C3N-00715 CCRCC miRNA-Seq tissue_normal CPT0203940009 3d4e7a1b-b0a9-4bbc-802a-f007a38872b4_mirnaseq_gdc_realn.bam 212306453 BAM harmonized CPTAC3 75630e79-767b-4a25-b49b-7d09d29877bc 79860befb4f400dbcfdefe71fc281c8d { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00715.miRNA-Seq.T C3N-00715 CCRCC miRNA-Seq tumor CPT0203930009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTAGAG_S18_L008_R1_001.unaln.bam 196644461 BAM unaligned CPTAC3 53aaa613-55c7-4bba-84ed-16911ccabb9f 56fe1a2b453fb86efd6272ceb83775ff { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor' } C3N-00715.miRNA-Seq.T.hg38 C3N-00715 CCRCC miRNA-Seq tumor CPT0203930009 76eaea9b-99c9-4b62-8202-09e91ae51304_mirnaseq_gdc_realn.bam 212744699 BAM harmonized CPTAC3 b7e7d943-d712-4d6a-9bb0-6153b7ad15e7 7eb6876d914f3c8409862e23fbd1bc9a { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00715.RNA-Seq.chimeric.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 4d554911-af8b-4638-b426-4a0959a8b552.rna_seq.chimeric.gdc_realn.bam 34769467 BAM chimeric harmonized CPTAC3 c2ad1b98-287f-4fc4-873e-3628220da246 6ef1d8a8a0058706b000eb9b79ccb517 { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00715.RNA-Seq.chimeric.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 3868dee7-3acc-4353-b2ed-ac10eb2a5e43.rna_seq.chimeric.gdc_realn.bam 392555154 BAM chimeric harmonized CPTAC3 6258ab44-675a-463a-af84-0efbd799eb50 a9587d0c5d64849b348c9a9fdf209909 { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00715.RNA-Seq.genomic.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 4d554911-af8b-4638-b426-4a0959a8b552.rna_seq.genomic.gdc_realn.bam 9548354902 BAM genomic harmonized CPTAC3 a946d40a-102c-4e45-897e-8bebfd79df7e a8c7fdbee32cfb4749aae6ec58c03dd2 { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00715.RNA-Seq.genomic.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 3868dee7-3acc-4353-b2ed-ac10eb2a5e43.rna_seq.genomic.gdc_realn.bam 8706723561 BAM genomic harmonized CPTAC3 7876d767-4984-4cfb-bb37-a5e4050ccb5f 7d6b83ca30520a45eebf081e7e7ad272 { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00715.RNA-Seq.R1_L001.A C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 190115_UNC31-K00269_0179_BH357YBBXY_ACTTGA_S4_L001_R1_001.fastq.gz 3826716047 FASTQ R1_L001 unaligned CPTAC3 458cc937-d7c6-4c8e-ba37-30fd0ed42c3d 26fbc0540f8b6d8187fddec0d411f69e { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00715.RNA-Seq.R1_L003.T C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTCCGC_S10_L003_R1_001.fastq.gz 3837113526 FASTQ R1_L003 unaligned CPTAC3 13cbc902-21f0-43aa-97c5-7c5ce1817d51 ad1b56dd59eb5a7eb4d4bc28ed879e3f { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00715.RNA-Seq.R2_L001.A C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 190115_UNC31-K00269_0179_BH357YBBXY_ACTTGA_S4_L001_R2_001.fastq.gz 4197904251 FASTQ R2_L001 unaligned CPTAC3 3ae71ad4-a3f1-4bea-91d0-fc3afdf7ec87 658732f559e901617e1ba9c1b8ce1e3f { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00715.RNA-Seq.R2_L003.T C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTCCGC_S10_L003_R2_001.fastq.gz 4326772146 FASTQ R2_L003 unaligned CPTAC3 80f776fd-c686-4428-aa33-809d3d3ebae2 735b92e5d6dac155e4430c440129332e { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00715.RNA-Seq.transcriptome.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 4d554911-af8b-4638-b426-4a0959a8b552.rna_seq.transcriptome.gdc_realn.bam 8839759135 BAM transcriptome harmonized CPTAC3 53ced639-760f-45dd-8ea4-767c6e1051ae 6bab3d55fafc4cf2336ae6152155c604 { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00715.RNA-Seq.transcriptome.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 3868dee7-3acc-4353-b2ed-ac10eb2a5e43.rna_seq.transcriptome.gdc_realn.bam 9499976358 BAM transcriptome harmonized CPTAC3 158835ab-4337-435e-b325-68411091a35d 987e2b561840f171a8535a7b476944e1 { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor' } +C3N-00715.RNA-Seq.chimeric.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 762402c0-da7d-4e60-bf87-6c49e81ccafb.rna_seq.chimeric.gdc_realn.bam 34761469 BAM chimeric harmonized CPTAC3 06d883ec-dc74-41d2-8be3-197f7c8ecf65 21b26faf1b28e8714fa4718e35f4eec2 { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00715.RNA-Seq.chimeric.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 f961c0ce-583e-4e41-84ad-411ec074342a.rna_seq.chimeric.gdc_realn.bam 392509198 BAM chimeric harmonized CPTAC3 2fd02f99-a172-44ff-9f2b-b783d8ba9dbe 5c5190ec4619405b3e4b1fc82bfa68a0 { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor' } +C3N-00715.RNA-Seq.genomic.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 762402c0-da7d-4e60-bf87-6c49e81ccafb.rna_seq.genomic.gdc_realn.bam 9549757673 BAM genomic harmonized CPTAC3 36fef037-4f51-4433-b949-74955c94f8a2 eb7b29e303dc4d437c61fcbb30b48e90 { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00715.RNA-Seq.genomic.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 f961c0ce-583e-4e41-84ad-411ec074342a.rna_seq.genomic.gdc_realn.bam 8708429886 BAM genomic harmonized CPTAC3 37d600b7-4d20-4396-8fe6-b7759655022f 20689d5b8e3612bec0f94c0032ee4d52 { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor' } +C3N-00715.RNA-Seq.R1_L001.A C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 190115_UNC31-K00269_0179_BH357YBBXY_ACTTGA_S4_L001_R1_001.fastq.gz 3826716047 FASTQ R1_L001 unaligned CPTAC3 458cc937-d7c6-4c8e-ba37-30fd0ed42c3d 26fbc0540f8b6d8187fddec0d411f69e { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-00715.RNA-Seq.R1_L003.T C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTCCGC_S10_L003_R1_001.fastq.gz 3837113526 FASTQ R1_L003 unaligned CPTAC3 13cbc902-21f0-43aa-97c5-7c5ce1817d51 ad1b56dd59eb5a7eb4d4bc28ed879e3f { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00715.RNA-Seq.R2_L001.A C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 190115_UNC31-K00269_0179_BH357YBBXY_ACTTGA_S4_L001_R2_001.fastq.gz 4197904251 FASTQ R2_L001 unaligned CPTAC3 3ae71ad4-a3f1-4bea-91d0-fc3afdf7ec87 658732f559e901617e1ba9c1b8ce1e3f { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-00715.RNA-Seq.R2_L003.T C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTCCGC_S10_L003_R2_001.fastq.gz 4326772146 FASTQ R2_L003 unaligned CPTAC3 80f776fd-c686-4428-aa33-809d3d3ebae2 735b92e5d6dac155e4430c440129332e { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00715.RNA-Seq.transcriptome.A.hg38 C3N-00715 CCRCC RNA-Seq tissue_normal CPT0203940009 762402c0-da7d-4e60-bf87-6c49e81ccafb.rna_seq.transcriptome.gdc_realn.bam 10085290443 BAM transcriptome harmonized CPTAC3 92a842b4-51a5-4f0a-8f46-b6797bff17da d1143379230f43c946951719d5743ab1 { 'aliquot_tag': 'ALQ_ac8a227a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00715.RNA-Seq.transcriptome.T.hg38 C3N-00715 CCRCC RNA-Seq tumor CPT0203930009 f961c0ce-583e-4e41-84ad-411ec074342a.rna_seq.transcriptome.gdc_realn.bam 10759312886 BAM transcriptome harmonized CPTAC3 79aeee4e-361a-4c53-87f9-cc24a10fba9e 89f9d7a21720e0a00fee66a610592f4f { 'aliquot_tag': 'ALQ_1eaafe6a', 'gdc_sample_type': 'Primary Tumor' } C3N-00715.WGS.N C3N-00715 CCRCC WGS blood_normal CPT0203970002 CPT0203970002.WholeGenome.RP-1303.bam 59006730336 BAM aligned CPTAC3 75abcf27-9ffa-4c09-b859-ef263dbe4831 08d780b606bf04aa5a8195058be190e0 { 'aliquot_tag': 'ALQ_7cf88122', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00715.WGS.N.hg38 C3N-00715 CCRCC WGS blood_normal CPT0203970002 ab1402df-40d6-4ae0-a989-f3e28a544fda_wgs_gdc_realn.bam 85549865401 BAM harmonized CPTAC3 670e1eac-c39f-45a3-9e4f-4cdd42af654c 1fcf96ae7b0af2ac20ad79e0825030d0 { 'aliquot_tag': 'ALQ_7cf88122', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00715.WGS.T C3N-00715 CCRCC WGS tumor CPT0203930006 CPT0203930006.WholeGenome.RP-1303.bam 66141459656 BAM aligned CPTAC3 07658abd-12b9-4ece-a072-d5855a7a9d37 c7f5ee376afeaefdace66413b2465691 { 'aliquot_tag': 'ALQ_8e15e3fb', 'gdc_sample_type': 'Primary Tumor' } @@ -22338,16 +24167,16 @@ C3N-00721.miRNA-Seq.A C3N-00721 CCRCC miRNA-Seq tissue_normal CPT0204020009 1902 C3N-00721.miRNA-Seq.A.hg38 C3N-00721 CCRCC miRNA-Seq tissue_normal CPT0204020009 f461c27a-df1e-4fb3-82aa-d35ef7ad5a77_mirnaseq_gdc_realn.bam 167597510 BAM harmonized CPTAC3 bd277164-5bb0-4506-9a99-465460415f3b 425d7aca99631c52b03122831f4934ba { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00721.miRNA-Seq.T C3N-00721 CCRCC miRNA-Seq tumor CPT0204010009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTCCGC_S19_L008_R1_001.unaln.bam 188803861 BAM unaligned CPTAC3 c8f7670a-382b-48c4-805c-aec13c2bde06 19fcb61444fe8bcc1bed6e81ae9ebf24 { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor' } C3N-00721.miRNA-Seq.T.hg38 C3N-00721 CCRCC miRNA-Seq tumor CPT0204010009 2e8da10b-f4d8-494e-a276-4df9ef1eb44e_mirnaseq_gdc_realn.bam 206636498 BAM harmonized CPTAC3 d41ab74d-7e47-4eff-80ac-e983c58db827 85a0d46fc8fcf9322ca205beca5aa884 { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00721.RNA-Seq.chimeric.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 97c6101c-a1e0-47d8-8164-1d5b9cb9ed07.rna_seq.chimeric.gdc_realn.bam 38951563 BAM chimeric harmonized CPTAC3 8906be2a-7099-42b1-9969-2c67a28d31bf 662c893b2722508d3614fd838c4c0c0b { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00721.RNA-Seq.chimeric.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 18713c59-ac60-42ec-a182-d02419047e25.rna_seq.chimeric.gdc_realn.bam 333646875 BAM chimeric harmonized CPTAC3 cbadfcdd-a61b-4a3a-8436-6842070bc31b 84590eb2b99321d5861b87fa88945e8a { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00721.RNA-Seq.genomic.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 97c6101c-a1e0-47d8-8164-1d5b9cb9ed07.rna_seq.genomic.gdc_realn.bam 10198873441 BAM genomic harmonized CPTAC3 51a8672f-5423-426f-8c3d-6269d7db6ccc 3f6b5ea9329c58d782b26c7df60811f0 { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00721.RNA-Seq.genomic.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 18713c59-ac60-42ec-a182-d02419047e25.rna_seq.genomic.gdc_realn.bam 8078359553 BAM genomic harmonized CPTAC3 c153180e-dc19-46c2-815f-cc3d0086307e 4f84f8a8bb96775b22ed3aa2cc005962 { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00721.RNA-Seq.R1_L004.T C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGAAA_S15_L004_R1_001.fastq.gz 3577737714 FASTQ R1_L004 unaligned CPTAC3 04a32000-08f5-4a3d-be0b-5c35170913d8 b3a025d7973cddc557a51219936fe4d1 { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00721.RNA-Seq.R1_L008.A C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L008_R1_001.fastq.gz 4178594326 FASTQ R1_L008 unaligned CPTAC3 798d8ffc-7f64-44c5-8b14-34622e04bc92 2460955d5752b133f2cf29b55ce49c9e { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00721.RNA-Seq.R2_L004.T C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGAAA_S15_L004_R2_001.fastq.gz 3727955624 FASTQ R2_L004 unaligned CPTAC3 d157f2bc-5118-4f5f-88be-63b7bd141c17 016feac227dddb528ae7e4f34098d200 { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00721.RNA-Seq.R2_L008.A C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L008_R2_001.fastq.gz 4635484464 FASTQ R2_L008 unaligned CPTAC3 73fccaee-44e1-4bff-a961-0c71756e5bd7 0576027e5a7c1acbcb47bc784bf0475b { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00721.RNA-Seq.transcriptome.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 97c6101c-a1e0-47d8-8164-1d5b9cb9ed07.rna_seq.transcriptome.gdc_realn.bam 9291446939 BAM transcriptome harmonized CPTAC3 e3f0b4a1-993e-432d-86fa-51aed1d2e6fb 5d7a28fe8ab547f1b37416d5cb257c2b { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00721.RNA-Seq.transcriptome.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 18713c59-ac60-42ec-a182-d02419047e25.rna_seq.transcriptome.gdc_realn.bam 8400748555 BAM transcriptome harmonized CPTAC3 d7d56403-e8dd-489f-8194-e0b673c78c1b feba0465bed3ac1353fe19036147bdbc { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00721.RNA-Seq.chimeric.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 884ed654-84e2-4880-95f0-26a742ed92d0.rna_seq.chimeric.gdc_realn.bam 38939071 BAM chimeric harmonized CPTAC3 2ef7177e-a575-4167-84a4-e87a8ed04583 895142135616b429c6e43826ff006e17 { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00721.RNA-Seq.chimeric.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 5d2a153b-b272-45ba-b46a-4afde3f6711f.rna_seq.chimeric.gdc_realn.bam 333594160 BAM chimeric harmonized CPTAC3 aa47b7a6-da44-4187-b678-fa152d267aa2 799cc656e361883a7f68b61edb332bb3 { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00721.RNA-Seq.genomic.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 884ed654-84e2-4880-95f0-26a742ed92d0.rna_seq.genomic.gdc_realn.bam 10199883379 BAM genomic harmonized CPTAC3 647ec72d-1c9c-44cf-81b9-c0f9cf2271e0 1c974c2f88cef46d49acd466f91dd102 { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00721.RNA-Seq.genomic.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 5d2a153b-b272-45ba-b46a-4afde3f6711f.rna_seq.genomic.gdc_realn.bam 8080212493 BAM genomic harmonized CPTAC3 189d6983-a26a-4b26-a362-a590c1d9f24e 1b279c81a22ea72a5be2fe539dc145fa { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00721.RNA-Seq.R1_L004.T C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGAAA_S15_L004_R1_001.fastq.gz 3577737714 FASTQ R1_L004 unaligned CPTAC3 04a32000-08f5-4a3d-be0b-5c35170913d8 b3a025d7973cddc557a51219936fe4d1 { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00721.RNA-Seq.R1_L008.A C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L008_R1_001.fastq.gz 4178594326 FASTQ R1_L008 unaligned CPTAC3 798d8ffc-7f64-44c5-8b14-34622e04bc92 2460955d5752b133f2cf29b55ce49c9e { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00721.RNA-Seq.R2_L004.T C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 190201_UNC31-K00269_0189_AH3L7FBBXY_GTGAAA_S15_L004_R2_001.fastq.gz 3727955624 FASTQ R2_L004 unaligned CPTAC3 d157f2bc-5118-4f5f-88be-63b7bd141c17 016feac227dddb528ae7e4f34098d200 { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00721.RNA-Seq.R2_L008.A C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 181207_UNC32-K00270_0137_BH2LYCBBXY_GATCAG_S5_L008_R2_001.fastq.gz 4635484464 FASTQ R2_L008 unaligned CPTAC3 73fccaee-44e1-4bff-a961-0c71756e5bd7 0576027e5a7c1acbcb47bc784bf0475b { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00721.RNA-Seq.transcriptome.A.hg38 C3N-00721 CCRCC RNA-Seq tissue_normal CPT0204020009 884ed654-84e2-4880-95f0-26a742ed92d0.rna_seq.transcriptome.gdc_realn.bam 10506344340 BAM transcriptome harmonized CPTAC3 ede7f877-f2da-429f-a478-ea9d0fdacf2f 243e5f449174e70f651474ec42ce96e0 { 'aliquot_tag': 'ALQ_c162b89c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00721.RNA-Seq.transcriptome.T.hg38 C3N-00721 CCRCC RNA-Seq tumor CPT0204010009 5d2a153b-b272-45ba-b46a-4afde3f6711f.rna_seq.transcriptome.gdc_realn.bam 9480434391 BAM transcriptome harmonized CPTAC3 6618939b-cf79-43dd-abd9-43abbef452d0 e58cf23eae97cdf2ff9ec00b0abcab59 { 'aliquot_tag': 'ALQ_86c2c24c', 'gdc_sample_type': 'Primary Tumor' } C3N-00721.WGS.N C3N-00721 CCRCC WGS blood_normal CPT0204210002 CPT0204210002.WholeGenome.RP-1303.bam 56305995625 BAM aligned CPTAC3 5b2dc83c-ecd8-4bd9-b86b-4685038d38c1 39dcf9f2730d1909622ab92dca645dfb { 'aliquot_tag': 'ALQ_5cd8bacf', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00721.WGS.N.hg38 C3N-00721 CCRCC WGS blood_normal CPT0204210002 2064ed3d-fa0f-4f20-b282-8e3d96df5bc2_wgs_gdc_realn.bam 82396003839 BAM harmonized CPTAC3 32ab13dd-f90f-438b-b2f9-2d61a17446cd 674f3992ba2219bc00e420281be54365 { 'aliquot_tag': 'ALQ_5cd8bacf', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00721.WGS.T C3N-00721 CCRCC WGS tumor CPT0204010006 CPT0204010006.WholeGenome.RP-1303.bam 61236877107 BAM aligned CPTAC3 4e998d9f-c4d9-4760-85f8-4ed374b2ee8e dfa98fa8a374a54d11b566223fef8ea2 { 'aliquot_tag': 'ALQ_167ddfdd', 'gdc_sample_type': 'Primary Tumor' } @@ -22363,12 +24192,15 @@ C3N-00729.MethArray.Red.T C3N-00729 UCEC Methylation Array tumor CPT0064930010 2 C3N-00729.miRNA-Seq.T C3N-00729 UCEC miRNA-Seq tumor CPT0064930007 190228_UNC32-K00270_0151_AHYLY3BBXX_ATCACG_S1_L006_R1_001.unaln.bam 221778468 BAM unaligned CPTAC3 adf5b52a-4946-4dd1-84df-723481420e94 d7d3cb6e17eb4f9246d17f7f317b1fe9 { 'aliquot_tag': 'ALQ_d42ccce2', 'gdc_sample_type': 'Primary Tumor' } C3N-00729.miRNA-Seq.T.hg38 C3N-00729 UCEC miRNA-Seq tumor CPT0064930007 29d73a91-f661-43ff-b813-c3c3188204db_mirnaseq_gdc_realn.bam 250258265 BAM harmonized CPTAC3 74a41f5b-f378-4942-b4e3-df12e00d85c4 0c0e6360f15b60549f84565890674431 { 'aliquot_tag': 'ALQ_d42ccce2', 'gdc_sample_type': 'Primary Tumor' } C3N-00729.RNA-Seq.chimeric.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064930007 034ef131-95ed-4f92-bc27-cae01f27c528.rna_seq.chimeric.gdc_realn.bam 69796302 BAM chimeric harmonized CPTAC3 fbca5666-de71-4f49-b633-5bd1e2807213 4cd54236b0b8f29ad192ac58b612b13f { 'aliquot_tag': 'ALQ_d42ccce2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00729.RNA-Seq.genomic.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064930007 034ef131-95ed-4f92-bc27-cae01f27c528.rna_seq.genomic.gdc_realn.bam 7909644802 BAM genomic harmonized CPTAC3 73af22be-16d4-40ba-9c76-304c25a047de 8f6643750dc42caaf5a33a1391438c17 { 'aliquot_tag': 'ALQ_d42ccce2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00729.RNA-Seq.R1_L006.T C3N-00729 UCEC RNA-Seq tumor CPT0064930007 170823_UNC31-K00269_0075_AHLCW5BBXX_CCGTCC_S20_L006_R1_001.fastq.gz 3812942895 FASTQ R1_L006 unaligned CPTAC3 2c0420b6-8299-46ed-8971-deab6b23eabf d3916ef2a840dff3ce78341c15f99612 { 'aliquot_tag': 'ALQ_d42ccce2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00729.RNA-Seq.R1_.T C3N-00729 UCEC RNA-Seq tumor CPT0064980001 20210723_P2_B3_WB7988-plate2_S15_R1_001.fastq.gz 2272624657 FASTQ R1_ unaligned CPTAC3 19052f4d-fcab-405b-8ea4-b794722efc26 9670531e1da808c13421d5d3e4f5b92e { 'aliquot_tag': 'ALQ_4a9f58c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00729.RNA-Seq.R2_L006.T C3N-00729 UCEC RNA-Seq tumor CPT0064930007 170823_UNC31-K00269_0075_AHLCW5BBXX_CCGTCC_S20_L006_R2_001.fastq.gz 3940654655 FASTQ R2_L006 unaligned CPTAC3 f783684d-96e1-46be-a19e-686d53adf650 d943e09915050bd8c2b22361a424fad0 { 'aliquot_tag': 'ALQ_d42ccce2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00729.RNA-Seq.R2_.T C3N-00729 UCEC RNA-Seq tumor CPT0064980001 20210723_P2_B3_WB7988-plate2_S15_R2_001.fastq.gz 2364386036 FASTQ R2_ unaligned CPTAC3 4ea3edf7-e40c-48a8-859c-072a2db0bf48 6903fba68b239be07b8f85916fc256c5 { 'aliquot_tag': 'ALQ_4a9f58c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00729.RNA-Seq.chimeric.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064980001 292f51bb-32d8-497d-b9d2-923dd62888aa.rna_seq.chimeric.gdc_realn.bam 38236007 BAM chimeric harmonized CPTAC3 51fd3224-31cc-4cce-8425-b7577b8b3526 4989269cf30d8f4f9e3856f34778faee { 'aliquot_tag': 'ALQ_4a9f58c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00729.RNA-Seq.genomic.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064930007 034ef131-95ed-4f92-bc27-cae01f27c528.rna_seq.genomic.gdc_realn.bam 7909644802 BAM genomic harmonized CPTAC3 25a0e5d6-91b6-4933-a407-6a36220782a7 8f6643750dc42caaf5a33a1391438c17 { 'aliquot_tag': 'ALQ_d42ccce2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00729.RNA-Seq.genomic.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064980001 292f51bb-32d8-497d-b9d2-923dd62888aa.rna_seq.genomic.gdc_realn.bam 4311798212 BAM genomic harmonized CPTAC3 8260a676-96c8-4aa7-9d36-1c06fdcc7ba5 5c72a77aee67385f500e12f237bbbbee { 'aliquot_tag': 'ALQ_4a9f58c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00729.RNA-Seq.R1_L006.T C3N-00729 UCEC RNA-Seq tumor CPT0064930007 170823_UNC31-K00269_0075_AHLCW5BBXX_CCGTCC_S20_L006_R1_001.fastq.gz 3812942895 FASTQ R1_L006 unaligned CPTAC3 2c0420b6-8299-46ed-8971-deab6b23eabf d3916ef2a840dff3ce78341c15f99612 { 'aliquot_tag': 'ALQ_d42ccce2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00729.RNA-Seq.R2_L006.T C3N-00729 UCEC RNA-Seq tumor CPT0064930007 170823_UNC31-K00269_0075_AHLCW5BBXX_CCGTCC_S20_L006_R2_001.fastq.gz 3940654655 FASTQ R2_L006 unaligned CPTAC3 f783684d-96e1-46be-a19e-686d53adf650 d943e09915050bd8c2b22361a424fad0 { 'aliquot_tag': 'ALQ_d42ccce2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-00729.RNA-Seq.T C3N-00729 UCEC RNA-Seq tumor CPT0064980001 20210723_P2_B3_WB7988-plate2_S15_R1_001.fastq.gz 2272624657 FASTQ unaligned CPTAC3 19052f4d-fcab-405b-8ea4-b794722efc26 9670531e1da808c13421d5d3e4f5b92e +C3N-00729.RNA-Seq.T C3N-00729 UCEC RNA-Seq tumor CPT0064980001 20210723_P2_B3_WB7988-plate2_S15_R2_001.fastq.gz 2364386036 FASTQ unaligned CPTAC3 4ea3edf7-e40c-48a8-859c-072a2db0bf48 6903fba68b239be07b8f85916fc256c5 C3N-00729.RNA-Seq.transcriptome.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064930007 034ef131-95ed-4f92-bc27-cae01f27c528.rna_seq.transcriptome.gdc_realn.bam 11157577936 BAM transcriptome harmonized CPTAC3 4f3fc47b-080b-46fa-8f1b-c1e4a22b4b71 c60f56c98a8399103a66efd013d93d54 { 'aliquot_tag': 'ALQ_d42ccce2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00729.RNA-Seq.transcriptome.T.hg38 C3N-00729 UCEC RNA-Seq tumor CPT0064980001 292f51bb-32d8-497d-b9d2-923dd62888aa.rna_seq.transcriptome.gdc_realn.bam 2427502564 BAM transcriptome harmonized CPTAC3 5c139d62-3020-4ade-8ec2-363060b37a6c 2aca15c677db91253d523e978181e890 { 'aliquot_tag': 'ALQ_4a9f58c6', 'gdc_sample_type': 'Primary Tumor' } C3N-00729.WGS.N C3N-00729 UCEC WGS blood_normal CPT0070650002 CPT0070650002.WholeGenome.RP-1303.bam 70747202192 BAM aligned CPTAC3 b8ed770b-47a0-4845-80af-5ebe79665e31 047e69447716d4645ff6f0a34defa39e { 'aliquot_tag': 'ALQ_e2b55b95', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00729.WGS.N.hg38 C3N-00729 UCEC WGS blood_normal CPT0070650002 4c0795d8-5700-45d5-ac34-de5f2660a99d_gdc_realn.bam 107283875180 BAM harmonized CPTAC3 bc11cdc1-7b13-4d28-b9c4-6ad617ca75f7 def58da2f2f5520f9bf6bb357c019dee { 'aliquot_tag': 'ALQ_e2b55b95', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00729.WGS.T C3N-00729 UCEC WGS tumor CPT0064930010 CPT0064930010.WholeGenome.RP-1303.bam 69469227121 BAM aligned CPTAC3 4649d6f1-b5cb-482a-8790-72ed04fd2276 d82612b6bab948ac3b3fbb39c70bb2f2 { 'aliquot_tag': 'ALQ_53536800', 'gdc_sample_type': 'Primary Tumor' } @@ -22381,13 +24213,16 @@ C3N-00732.MethArray.Green.T C3N-00732 UCEC Methylation Array tumor CPT0089600009 C3N-00732.MethArray.Red.T C3N-00732 UCEC Methylation Array tumor CPT0089600009 202234380051_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 94a9b522-7da1-4ab0-8885-38791f88fc9f 13a55a2f8fd0673c853136ef4da624cd { 'aliquot_tag': 'ALQ_f13f5a12', 'gdc_sample_type': 'Primary Tumor' } C3N-00732.miRNA-Seq.T C3N-00732 UCEC miRNA-Seq tumor CPT0089600006 180724_UNC32-K00270_0106_BHWK3MBBXX_CAAAAG_S4_L007_R1_001.unaln.bam 221859569 BAM unaligned CPTAC3 5569f880-6676-4707-89dc-7e6425da81f8 41ff851da4cdb2a85ec4580bb44479af { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor' } C3N-00732.miRNA-Seq.T.hg38 C3N-00732 UCEC miRNA-Seq tumor CPT0089600006 34c99399-5574-4d5f-95dd-567174cd4564_mirnaseq_gdc_realn.bam 241290857 BAM harmonized CPTAC3 1babbffa-e426-41c0-a767-87df621265e2 a847651a832123f08f41c7215f8594bc { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor' } -C3N-00732.RNA-Seq.chimeric.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 c2fe3b02-1ebd-45f9-8996-f489f4517b11.rna_seq.chimeric.gdc_realn.bam 61434295 BAM chimeric harmonized CPTAC3 a36e3410-bc31-4da6-9d0d-3684cbb2e4b4 78fe999d0f85c79a4dd98d68d6600610 { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor' } -C3N-00732.RNA-Seq.genomic.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 c2fe3b02-1ebd-45f9-8996-f489f4517b11.rna_seq.genomic.gdc_realn.bam 9684610927 BAM genomic harmonized CPTAC3 9f7bae46-15a2-43b3-997f-59bae2cdd737 e11db2d913707fbf477a78862c1e50a8 { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor' } -C3N-00732.RNA-Seq.R1_L007.T C3N-00732 UCEC RNA-Seq tumor CPT0089600006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L007_R1_001.fastq.gz 4412318758 FASTQ R1_L007 unaligned CPTAC3 3571f90c-5e38-4fc8-a3fc-3dc98ca19a38 2f65f1d3dc6b525df9b041b39c0b11c9 { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor' } -C3N-00732.RNA-Seq.R1_.T C3N-00732 UCEC RNA-Seq tumor CPT0089640001 20210714_P1_B9_WB7988_plate1_S21_R1_001.fastq.gz 3352594703 FASTQ R1_ unaligned CPTAC3 ed67403c-314c-4352-8dfd-50ddb63df81d 7666b605b616a653e46aa73385583dbf { 'aliquot_tag': 'ALQ_a6474e0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00732.RNA-Seq.R2_L007.T C3N-00732 UCEC RNA-Seq tumor CPT0089600006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L007_R2_001.fastq.gz 4660981129 FASTQ R2_L007 unaligned CPTAC3 69c052f4-e3ba-45c0-95f7-85356b3434d3 03aab056d319ffebf2beda4e9fe6da93 { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor' } -C3N-00732.RNA-Seq.R2_.T C3N-00732 UCEC RNA-Seq tumor CPT0089640001 20210714_P1_B9_WB7988_plate1_S21_R2_001.fastq.gz 3534696609 FASTQ R2_ unaligned CPTAC3 994dbf32-f9e5-4eeb-bc3c-92ebca3edbed 784c00f6a138065125c5901d12daf20f { 'aliquot_tag': 'ALQ_a6474e0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00732.RNA-Seq.transcriptome.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 c2fe3b02-1ebd-45f9-8996-f489f4517b11.rna_seq.transcriptome.gdc_realn.bam 8565082616 BAM transcriptome harmonized CPTAC3 8cfd122f-4273-4494-a98f-aae1181e8171 001c7eeb735d03e47474787bfab8f036 { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor' } +C3N-00732.RNA-Seq.chimeric.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 5fd49087-0a8e-449f-b950-0f65a00fdabb.rna_seq.chimeric.gdc_realn.bam 61420627 BAM chimeric harmonized CPTAC3 52ecbffd-6cfb-4cc0-9601-4bcca812d840 454be922752f2e42ba3d44523728be3f { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor' } +C3N-00732.RNA-Seq.chimeric.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089640001 142e135c-8a39-4080-9b5e-be1ea3973d57.rna_seq.chimeric.gdc_realn.bam 68837977 BAM chimeric harmonized CPTAC3 7f011230-29b2-40a6-aede-04258105bfa4 20cbe1ff85ceb71d4020464399dfc897 { 'aliquot_tag': 'ALQ_a6474e0', 'gdc_sample_type': 'Primary Tumor' } +C3N-00732.RNA-Seq.genomic.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 5fd49087-0a8e-449f-b950-0f65a00fdabb.rna_seq.genomic.gdc_realn.bam 9685747131 BAM genomic harmonized CPTAC3 ff782790-c272-4b1c-98dc-97e1c2ae83df 2585ea835d6cff21d0cd45a8778649da { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor' } +C3N-00732.RNA-Seq.genomic.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089640001 142e135c-8a39-4080-9b5e-be1ea3973d57.rna_seq.genomic.gdc_realn.bam 5931318204 BAM genomic harmonized CPTAC3 7700e71e-8bde-49b9-aefe-c76b4b63b487 a2c8cf5f0efd77ea264dd9091f72f761 { 'aliquot_tag': 'ALQ_a6474e0', 'gdc_sample_type': 'Primary Tumor' } +C3N-00732.RNA-Seq.R1_L007.T C3N-00732 UCEC RNA-Seq tumor CPT0089600006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L007_R1_001.fastq.gz 4412318758 FASTQ R1_L007 unaligned CPTAC3 3571f90c-5e38-4fc8-a3fc-3dc98ca19a38 2f65f1d3dc6b525df9b041b39c0b11c9 { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00732.RNA-Seq.R2_L007.T C3N-00732 UCEC RNA-Seq tumor CPT0089600006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L007_R2_001.fastq.gz 4660981129 FASTQ R2_L007 unaligned CPTAC3 69c052f4-e3ba-45c0-95f7-85356b3434d3 03aab056d319ffebf2beda4e9fe6da93 { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-00732.RNA-Seq.T C3N-00732 UCEC RNA-Seq tumor CPT0089640001 20210714_P1_B9_WB7988_plate1_S21_R1_001.fastq.gz 3352594703 FASTQ unaligned CPTAC3 ed67403c-314c-4352-8dfd-50ddb63df81d 7666b605b616a653e46aa73385583dbf +C3N-00732.RNA-Seq.T C3N-00732 UCEC RNA-Seq tumor CPT0089640001 20210714_P1_B9_WB7988_plate1_S21_R2_001.fastq.gz 3534696609 FASTQ unaligned CPTAC3 994dbf32-f9e5-4eeb-bc3c-92ebca3edbed 784c00f6a138065125c5901d12daf20f +C3N-00732.RNA-Seq.transcriptome.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089600006 5fd49087-0a8e-449f-b950-0f65a00fdabb.rna_seq.transcriptome.gdc_realn.bam 9860118481 BAM transcriptome harmonized CPTAC3 0ec8861e-5648-4915-aaae-d5258fbb54b6 77733efe18484fba2d279002f014b25a { 'aliquot_tag': 'ALQ_61804783', 'gdc_sample_type': 'Primary Tumor' } +C3N-00732.RNA-Seq.transcriptome.T.hg38 C3N-00732 UCEC RNA-Seq tumor CPT0089640001 142e135c-8a39-4080-9b5e-be1ea3973d57.rna_seq.transcriptome.gdc_realn.bam 3981449465 BAM transcriptome harmonized CPTAC3 7219d535-f9ce-4c49-96af-b83d16e34368 353b2c7279ddf64fc17a5fb74a10c68a { 'aliquot_tag': 'ALQ_a6474e0', 'gdc_sample_type': 'Primary Tumor' } C3N-00732.WGS.N C3N-00732 UCEC WGS blood_normal CPT0091360002 CPT0091360002.WholeGenome.RP-1303.bam 61312316100 BAM aligned CPTAC3 76e6bff3-23ec-4287-bcb7-2f1584ab484f 0d7e164ca9a9726822a73afaa677e106 { 'aliquot_tag': 'ALQ_4625a970', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00732.WGS.N.hg38 C3N-00732 UCEC WGS blood_normal CPT0091360002 37b66075-5917-4067-9205-f63e6a26cc77_wgs_gdc_realn.bam 91540470246 BAM harmonized CPTAC3 177b9764-3478-4067-bc02-114a7af40061 2facdc0ee9091325c08f926132ec2494 { 'aliquot_tag': 'ALQ_4625a970', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00732.WGS.T C3N-00732 UCEC WGS tumor CPT0089600009 CPT0089600009.WholeGenome.RP-1303.bam 65123885581 BAM aligned CPTAC3 67937f8e-a495-4b41-8e3a-8c953ac9b883 23cf165ee8f60a81f85fa6ccb1d73e19 { 'aliquot_tag': 'ALQ_f13f5a12', 'gdc_sample_type': 'Primary Tumor' } @@ -22411,16 +24246,16 @@ C3N-00733.DUP_56099e7b.WXS.T.hg38 C3N-00733 CCRCC WXS tumor CPT0025900009 8074ef C3N-00733.DUP_90452faf.miRNA-Seq.T C3N-00733 CCRCC miRNA-Seq tumor CPT0025890009 200526_UNC32-K00270_0248_BHH7WFBBXY_CCGTCC_S28_L005_R1_001.unaln.bam 287602700 BAM unaligned CPTAC3 768e1e96-378a-402e-ae4a-ba49134aa900 8d987d89d6b13b6818b3fd55ec83173c { 'aliquot_tag': 'DUP_90452faf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00733.DUP_90452faf.miRNA-Seq.T.hg38 C3N-00733 CCRCC miRNA-Seq tumor CPT0025890009 2d0b18c4-06b3-493d-8fb2-fcb6abb04ced_mirnaseq_gdc_realn.bam 320632588 BAM harmonized CPTAC3 b22f9ce1-b57b-49e3-910b-0b6e8d6b21e6 2f1710dc22210ed98c6b3d3a2a593a3c { 'aliquot_tag': 'DUP_90452faf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00733.DUP_90452faf.RNA-Seq.chimeric.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 507541db-1414-4942-b386-b0d2bc245bee.rna_seq.chimeric.gdc_realn.bam 102217423 BAM chimeric harmonized CPTAC3 69f21abe-dc80-4740-87a3-c7ff5955d7fb 4aa5af7d097d3873c5d1fdbb66e45288 { 'aliquot_tag': 'DUP_90452faf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00733.DUP_90452faf.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 507541db-1414-4942-b386-b0d2bc245bee.rna_seq.genomic.gdc_realn.bam 8929253402 BAM genomic harmonized CPTAC3 001e7df6-d46d-44f2-a09c-10084522e7a2 bf256c12c372530b62507c0f998c620e { 'aliquot_tag': 'DUP_90452faf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00733.DUP_90452faf.RNA-Seq.R1_L007.T C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 200518_UNC32-K00270_0247_AHH573BBXY_AATCCGGA-CTACAGTT_S39_L007_R1_001.fastq.gz 4030868305 FASTQ R1_L007 unaligned CPTAC3 683ea76b-a4d4-42bc-802f-407d86f2db8c c7622a2b8690f38d64e26f63f86104b0 { 'aliquot_tag': 'DUP_90452faf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00733.DUP_90452faf.RNA-Seq.R2_L007.T C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 200518_UNC32-K00270_0247_AHH573BBXY_AATCCGGA-CTACAGTT_S39_L007_R2_001.fastq.gz 4779589866 FASTQ R2_L007 unaligned CPTAC3 3a96f82a-c491-46e5-9910-b23d52f60c71 bfea20f342d61070710e6df8183e1afa { 'aliquot_tag': 'DUP_90452faf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00733.DUP_90452faf.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 507541db-1414-4942-b386-b0d2bc245bee.rna_seq.genomic.gdc_realn.bam 8929253402 BAM genomic harmonized CPTAC3 5d25aaa8-ca65-4ba5-8d69-da251938e2ea bf256c12c372530b62507c0f998c620e { 'aliquot_tag': 'DUP_90452faf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00733.DUP_90452faf.RNA-Seq.R1_L007.T C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 200518_UNC32-K00270_0247_AHH573BBXY_AATCCGGA-CTACAGTT_S39_L007_R1_001.fastq.gz 4030868305 FASTQ R1_L007 unaligned CPTAC3 683ea76b-a4d4-42bc-802f-407d86f2db8c c7622a2b8690f38d64e26f63f86104b0 { 'aliquot_tag': 'DUP_90452faf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3N-00733.DUP_90452faf.RNA-Seq.R2_L007.T C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 200518_UNC32-K00270_0247_AHH573BBXY_AATCCGGA-CTACAGTT_S39_L007_R2_001.fastq.gz 4779589866 FASTQ R2_L007 unaligned CPTAC3 3a96f82a-c491-46e5-9910-b23d52f60c71 bfea20f342d61070710e6df8183e1afa { 'aliquot_tag': 'DUP_90452faf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3N-00733.DUP_90452faf.RNA-Seq.transcriptome.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025890009 507541db-1414-4942-b386-b0d2bc245bee.rna_seq.transcriptome.gdc_realn.bam 13524989040 BAM transcriptome harmonized CPTAC3 622a1750-04ee-49cd-88a9-9ab14bf58406 ce4db59d5a24ece47479719c7b3f3d19 { 'aliquot_tag': 'DUP_90452faf', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00733.DUP_c6b683ea.miRNA-Seq.T C3N-00733 CCRCC miRNA-Seq tumor CPT0025900006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACAGTG_S35_L005_R1_001.unaln.bam 216224719 BAM unaligned CPTAC3 c2526660-c719-4477-8f3b-27879585a8ca 87fd7ebd7dce01bafadbc59e1496e354 { 'aliquot_tag': 'DUP_c6b683ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00733.DUP_c6b683ea.miRNA-Seq.T.hg38 C3N-00733 CCRCC miRNA-Seq tumor CPT0025900006 28cf323b-ac0c-473c-b72a-96a357fe1ac0_mirnaseq_gdc_realn.bam 237028288 BAM harmonized CPTAC3 039c8f1e-ac79-45c1-9d13-a50d5f065529 0f3a4e81129fd198597f6bf410663bd6 { 'aliquot_tag': 'DUP_c6b683ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00733.DUP_c6b683ea.RNA-Seq.chimeric.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 75588feb-77f8-48ed-b759-1518687cbe08.rna_seq.chimeric.gdc_realn.bam 182542817 BAM chimeric harmonized CPTAC3 93317062-fc6c-4172-9a65-f0ce05160b9a a4c6a98a4094b80e448c894684041b17 { 'aliquot_tag': 'DUP_c6b683ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00733.DUP_c6b683ea.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 75588feb-77f8-48ed-b759-1518687cbe08.rna_seq.genomic.gdc_realn.bam 7811256435 BAM genomic harmonized CPTAC3 2cb4e932-41a0-4f96-9daf-64d65ecf740c a4cb42ad670e4b5620c95337ce3d4c6d { 'aliquot_tag': 'DUP_c6b683ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00733.DUP_c6b683ea.RNA-Seq.R1_L005.T C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 200518_UNC32-K00270_0247_AHH573BBXY_ATCCACTG-AGGTGCGT_S32_L005_R1_001.fastq.gz 3662428965 FASTQ R1_L005 unaligned CPTAC3 b5289396-3301-4936-a42e-feb806cc356e 5e9662e86b8810b9c761e6007b6324fd { 'aliquot_tag': 'DUP_c6b683ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00733.DUP_c6b683ea.RNA-Seq.R2_L005.T C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 200518_UNC32-K00270_0247_AHH573BBXY_ATCCACTG-AGGTGCGT_S32_L005_R2_001.fastq.gz 4337400614 FASTQ R2_L005 unaligned CPTAC3 d4496247-bbd6-4f4f-ae65-d46d22bfc354 15618e527b3062c6bdcf3505c8d2afa5 { 'aliquot_tag': 'DUP_c6b683ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00733.DUP_c6b683ea.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 75588feb-77f8-48ed-b759-1518687cbe08.rna_seq.genomic.gdc_realn.bam 7811256435 BAM genomic harmonized CPTAC3 8ada998d-5f05-4bc8-acbb-11a8fed18c75 a4cb42ad670e4b5620c95337ce3d4c6d { 'aliquot_tag': 'DUP_c6b683ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00733.DUP_c6b683ea.RNA-Seq.R1_L005.T C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 200518_UNC32-K00270_0247_AHH573BBXY_ATCCACTG-AGGTGCGT_S32_L005_R1_001.fastq.gz 3662428965 FASTQ R1_L005 unaligned CPTAC3 b5289396-3301-4936-a42e-feb806cc356e 5e9662e86b8810b9c761e6007b6324fd { 'aliquot_tag': 'DUP_c6b683ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3N-00733.DUP_c6b683ea.RNA-Seq.R2_L005.T C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 200518_UNC32-K00270_0247_AHH573BBXY_ATCCACTG-AGGTGCGT_S32_L005_R2_001.fastq.gz 4337400614 FASTQ R2_L005 unaligned CPTAC3 d4496247-bbd6-4f4f-ae65-d46d22bfc354 15618e527b3062c6bdcf3505c8d2afa5 { 'aliquot_tag': 'DUP_c6b683ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3N-00733.DUP_c6b683ea.RNA-Seq.transcriptome.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025900006 75588feb-77f8-48ed-b759-1518687cbe08.rna_seq.transcriptome.gdc_realn.bam 11313198448 BAM transcriptome harmonized CPTAC3 cd8635d7-c1ff-441e-8d45-69f6d69ab740 39586ba82440c0ca4b85a819e61e7e37 { 'aliquot_tag': 'DUP_c6b683ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00733.MethArray.Green.A C3N-00733 CCRCC Methylation Array tissue_normal CPT0025920009 203027380024_R05C01_Grn.idat 13676229 IDAT Green NA CPTAC3 8989635e-ce61-4b14-bbf7-5221e0901d19 25bbc9c7f73f3bdf7ef39c60a70b7906 { 'aliquot_tag': 'ALQ_2cc9cd1b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00733.MethArray.Green.T C3N-00733 CCRCC Methylation Array tumor CPT0025880009 202178770100_R02C01_Grn.idat 13676231 IDAT Green NA CPTAC3 219e2b7e-0c3e-4f46-9f3e-39e32e2b34a4 4dea1874bd8165e3ebe2df6002e74b47 { 'aliquot_tag': 'ALQ_ad25061f', 'gdc_sample_type': 'Primary Tumor' } @@ -22432,12 +24267,12 @@ C3N-00733.miRNA-Seq.T C3N-00733 CCRCC miRNA-Seq tumor CPT0025880006 180924_UNC31 C3N-00733.miRNA-Seq.T.hg38 C3N-00733 CCRCC miRNA-Seq tumor CPT0025880006 47281ea3-2e85-4d26-af08-9d6987909ef5_mirnaseq_gdc_realn.bam 298985025 BAM harmonized CPTAC3 01c05649-de2f-4da3-a13b-415ffe3cc648 5200f48ab75abd0ddd3b046de08ef73a { 'aliquot_tag': 'ALQ_3d9a1b8e', 'gdc_sample_type': 'Primary Tumor' } C3N-00733.RNA-Seq.chimeric.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 c927c161-ae24-4dd0-b01e-6c23cd37a0cc.rna_seq.chimeric.gdc_realn.bam 37013443 BAM chimeric harmonized CPTAC3 92189932-53ad-4b30-8700-bc3617fa0579 df4e1f30008225a6294214a34712731d { 'aliquot_tag': 'ALQ_bc76d08a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00733.RNA-Seq.chimeric.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 b8838af5-d797-4bb0-8351-e1ae64ce757b.rna_seq.chimeric.gdc_realn.bam 67200709 BAM chimeric harmonized CPTAC3 ce546501-1435-432e-b7e9-c7db89b68c7c 699d9e3f35a0ee93de4e143c291947e1 { 'aliquot_tag': 'ALQ_3d9a1b8e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00733.RNA-Seq.genomic.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 c927c161-ae24-4dd0-b01e-6c23cd37a0cc.rna_seq.genomic.gdc_realn.bam 6567931312 BAM genomic harmonized CPTAC3 4ff01a44-0762-4c94-be29-593ad2bc6ac6 fdc27cd42eaf9e6f57fabe16af4c8017 { 'aliquot_tag': 'ALQ_bc76d08a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00733.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 b8838af5-d797-4bb0-8351-e1ae64ce757b.rna_seq.genomic.gdc_realn.bam 8187253488 BAM genomic harmonized CPTAC3 656ea493-e890-421d-ac94-c3078feff38a 4ba9edce74a29300e7fbbdc90e7d4b27 { 'aliquot_tag': 'ALQ_3d9a1b8e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00733.RNA-Seq.R1_L002.T C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L002_R1_001.fastq.gz 3838590591 FASTQ R1_L002 unaligned CPTAC3 28d915d0-355d-4a40-b2b0-4861b4223b89 3f0f8d5ec275d8a320a802bbe66e2be9 { 'aliquot_tag': 'ALQ_3d9a1b8e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00733.RNA-Seq.R1_L005.A C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 171212_UNC31-K00269_0102_AHN5MMBBXX_CAGATC_S19_L005_R1_001.fastq.gz 3327298978 FASTQ R1_L005 unaligned CPTAC3 e8f18475-f40c-430e-9d36-40289d91be5d ab80b3d07435d2c9e49ed835b7945e6e { 'aliquot_tag': 'ALQ_bc76d08a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00733.RNA-Seq.R2_L002.T C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4229170027 FASTQ R2_L002 unaligned CPTAC3 3e6b35d1-546a-4b2c-bbdf-17548ebefbf8 584840d094b19ccd240d01cd661c9f19 { 'aliquot_tag': 'ALQ_3d9a1b8e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00733.RNA-Seq.R2_L005.A C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 171212_UNC31-K00269_0102_AHN5MMBBXX_CAGATC_S19_L005_R2_001.fastq.gz 3697005122 FASTQ R2_L005 unaligned CPTAC3 43395028-ed4a-4afe-bd87-4f45cee73cec bc99dcda07d239643ec133d78ea06ce0 { 'aliquot_tag': 'ALQ_bc76d08a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00733.RNA-Seq.genomic.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 c927c161-ae24-4dd0-b01e-6c23cd37a0cc.rna_seq.genomic.gdc_realn.bam 6567931312 BAM genomic harmonized CPTAC3 8b44acd7-e881-46d0-ac33-5aaa85a2286c fdc27cd42eaf9e6f57fabe16af4c8017 { 'aliquot_tag': 'ALQ_bc76d08a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00733.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 b8838af5-d797-4bb0-8351-e1ae64ce757b.rna_seq.genomic.gdc_realn.bam 8187253488 BAM genomic harmonized CPTAC3 4c3a5fd4-15e1-42b8-b7a4-ed727b738708 4ba9edce74a29300e7fbbdc90e7d4b27 { 'aliquot_tag': 'ALQ_3d9a1b8e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00733.RNA-Seq.R1_L002.T C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L002_R1_001.fastq.gz 3838590591 FASTQ R1_L002 unaligned CPTAC3 28d915d0-355d-4a40-b2b0-4861b4223b89 3f0f8d5ec275d8a320a802bbe66e2be9 { 'aliquot_tag': 'ALQ_3d9a1b8e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00733.RNA-Seq.R1_L005.A C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 171212_UNC31-K00269_0102_AHN5MMBBXX_CAGATC_S19_L005_R1_001.fastq.gz 3327298978 FASTQ R1_L005 unaligned CPTAC3 e8f18475-f40c-430e-9d36-40289d91be5d ab80b3d07435d2c9e49ed835b7945e6e { 'aliquot_tag': 'ALQ_bc76d08a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00733.RNA-Seq.R2_L002.T C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4229170027 FASTQ R2_L002 unaligned CPTAC3 3e6b35d1-546a-4b2c-bbdf-17548ebefbf8 584840d094b19ccd240d01cd661c9f19 { 'aliquot_tag': 'ALQ_3d9a1b8e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-00733.RNA-Seq.R2_L005.A C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 171212_UNC31-K00269_0102_AHN5MMBBXX_CAGATC_S19_L005_R2_001.fastq.gz 3697005122 FASTQ R2_L005 unaligned CPTAC3 43395028-ed4a-4afe-bd87-4f45cee73cec bc99dcda07d239643ec133d78ea06ce0 { 'aliquot_tag': 'ALQ_bc76d08a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-00733.RNA-Seq.transcriptome.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal CPT0025920006 c927c161-ae24-4dd0-b01e-6c23cd37a0cc.rna_seq.transcriptome.gdc_realn.bam 8401432832 BAM transcriptome harmonized CPTAC3 d6af54a4-820c-42b5-9773-44d22594232a feb4b33c082622719934c4affc86a465 { 'aliquot_tag': 'ALQ_bc76d08a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00733.RNA-Seq.transcriptome.T.hg38 C3N-00733 CCRCC RNA-Seq tumor CPT0025880006 b8838af5-d797-4bb0-8351-e1ae64ce757b.rna_seq.transcriptome.gdc_realn.bam 12154517211 BAM transcriptome harmonized CPTAC3 405b40a2-d677-4a78-bf1b-c24942713a40 2aeeb5526bd557952b0451a5f06174e2 { 'aliquot_tag': 'ALQ_3d9a1b8e', 'gdc_sample_type': 'Primary Tumor' } C3N-00733.WGS.A C3N-00733 CCRCC WGS tissue_normal CPT0025920009 CPT0025920009.WholeGenome.RP-1303.bam 56669417340 BAM aligned CPTAC3 11ed7bba-50f0-421c-99ff-8a0423ce2fd8 bf047258266ff98ed3f6fface0cd6791 { 'aliquot_tag': 'ALQ_2cc9cd1b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -22457,12 +24292,15 @@ C3N-00734.MethArray.Red.T C3N-00734 UCEC Methylation Array tumor CPT0026030010 2 C3N-00734.miRNA-Seq.T C3N-00734 UCEC miRNA-Seq tumor CPT0026030007 181119_UNC31-K00269_0165_AH27WCBBXY_GTGGCC_S44_L005_R1_001.unaln.bam 191511272 BAM unaligned CPTAC3 1d3c45de-6c7a-4710-af2a-dd87c6483bf4 6489ff797e85aefbd136070379bb4725 { 'aliquot_tag': 'ALQ_e0f682f9', 'gdc_sample_type': 'Primary Tumor' } C3N-00734.miRNA-Seq.T.hg38 C3N-00734 UCEC miRNA-Seq tumor CPT0026030007 f7b784b2-9b9c-4f03-9cdd-41dcc512c96a_mirnaseq_gdc_realn.bam 212929994 BAM harmonized CPTAC3 cabb9bdf-3fc0-490a-92b3-0c94b1f33fed 6197af6adfceed2fe1a4fcc0045a1f07 { 'aliquot_tag': 'ALQ_e0f682f9', 'gdc_sample_type': 'Primary Tumor' } C3N-00734.RNA-Seq.chimeric.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026030007 b2f83d1c-6d5e-496c-aa88-ef0d919e9512.rna_seq.chimeric.gdc_realn.bam 50823506 BAM chimeric harmonized CPTAC3 db3f2e50-2fc3-40a7-99b8-d744bb0af890 70f67394d776ad5676004723f296d15f { 'aliquot_tag': 'ALQ_e0f682f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-00734.RNA-Seq.genomic.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026030007 b2f83d1c-6d5e-496c-aa88-ef0d919e9512.rna_seq.genomic.gdc_realn.bam 8729990643 BAM genomic harmonized CPTAC3 a47d2054-54de-485c-b360-407aafa8a19b 3f93d33baf15a43d1e645da7854b5ff6 { 'aliquot_tag': 'ALQ_e0f682f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-00734.RNA-Seq.R1_L002.T C3N-00734 UCEC RNA-Seq tumor CPT0026030007 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3795451643 FASTQ R1_L002 unaligned CPTAC3 9faa7052-ed20-4706-97f2-c3f183a4a0bd 0d1fa653e6f23d22403f7532778a9346 { 'aliquot_tag': 'ALQ_e0f682f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-00734.RNA-Seq.R1_.T C3N-00734 UCEC RNA-Seq tumor CPT0026090001 20210714_P1_G4_WB7988_plate1_S75_R1_001.fastq.gz 8517069624 FASTQ R1_ unaligned CPTAC3 bef96fc9-2027-4514-b529-268a201cd862 ac739a2957fdcf4f348042c211ea57ef { 'aliquot_tag': 'ALQ_43253f6d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00734.RNA-Seq.R2_L002.T C3N-00734 UCEC RNA-Seq tumor CPT0026030007 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 4182385550 FASTQ R2_L002 unaligned CPTAC3 4518b21b-b9a3-4261-b0e1-27b9f7d0e282 f89526247cdc2cc108ca05871fd3c2b9 { 'aliquot_tag': 'ALQ_e0f682f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-00734.RNA-Seq.R2_.T C3N-00734 UCEC RNA-Seq tumor CPT0026090001 20210714_P1_G4_WB7988_plate1_S75_R2_001.fastq.gz 9188877157 FASTQ R2_ unaligned CPTAC3 f3b1bc9b-5720-4770-ba78-e4dd8d3f784e 9ed8951cba75fafd4090bce1fe3ead16 { 'aliquot_tag': 'ALQ_43253f6d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00734.RNA-Seq.chimeric.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026090001 250685de-21d4-4ae7-b568-540089d7978c.rna_seq.chimeric.gdc_realn.bam 48103922 BAM chimeric harmonized CPTAC3 1002c63b-5759-49d8-b272-ada70eef9319 a4ed61193047c68abd77f299ffd55551 { 'aliquot_tag': 'ALQ_43253f6d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00734.RNA-Seq.genomic.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026030007 b2f83d1c-6d5e-496c-aa88-ef0d919e9512.rna_seq.genomic.gdc_realn.bam 8729990643 BAM genomic harmonized CPTAC3 da198d96-6999-4a8a-b2e9-0db17b81e7ae 3f93d33baf15a43d1e645da7854b5ff6 { 'aliquot_tag': 'ALQ_e0f682f9', 'gdc_sample_type': 'Primary Tumor' } +C3N-00734.RNA-Seq.genomic.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026090001 250685de-21d4-4ae7-b568-540089d7978c.rna_seq.genomic.gdc_realn.bam 17443474399 BAM genomic harmonized CPTAC3 5e74605c-b4bf-4fcd-b0db-b279d4c3dabd 912023536fbffcfe029d78689fa2f70f { 'aliquot_tag': 'ALQ_43253f6d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00734.RNA-Seq.R1_L002.T C3N-00734 UCEC RNA-Seq tumor CPT0026030007 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3795451643 FASTQ R1_L002 unaligned CPTAC3 9faa7052-ed20-4706-97f2-c3f183a4a0bd 0d1fa653e6f23d22403f7532778a9346 { 'aliquot_tag': 'ALQ_e0f682f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00734.RNA-Seq.R2_L002.T C3N-00734 UCEC RNA-Seq tumor CPT0026030007 170912_UNC31-K00269_0081_AHL3YKBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 4182385550 FASTQ R2_L002 unaligned CPTAC3 4518b21b-b9a3-4261-b0e1-27b9f7d0e282 f89526247cdc2cc108ca05871fd3c2b9 { 'aliquot_tag': 'ALQ_e0f682f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-00734.RNA-Seq.T C3N-00734 UCEC RNA-Seq tumor CPT0026090001 20210714_P1_G4_WB7988_plate1_S75_R1_001.fastq.gz 8517069624 FASTQ unaligned CPTAC3 bef96fc9-2027-4514-b529-268a201cd862 ac739a2957fdcf4f348042c211ea57ef +C3N-00734.RNA-Seq.T C3N-00734 UCEC RNA-Seq tumor CPT0026090001 20210714_P1_G4_WB7988_plate1_S75_R2_001.fastq.gz 9188877157 FASTQ unaligned CPTAC3 f3b1bc9b-5720-4770-ba78-e4dd8d3f784e 9ed8951cba75fafd4090bce1fe3ead16 C3N-00734.RNA-Seq.transcriptome.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026030007 b2f83d1c-6d5e-496c-aa88-ef0d919e9512.rna_seq.transcriptome.gdc_realn.bam 11773631206 BAM transcriptome harmonized CPTAC3 665a2ae1-096f-48f9-9bad-6e1a3b110d19 4e06688364ce06b0aa04e85f0d0f0810 { 'aliquot_tag': 'ALQ_e0f682f9', 'gdc_sample_type': 'Primary Tumor' } +C3N-00734.RNA-Seq.transcriptome.T.hg38 C3N-00734 UCEC RNA-Seq tumor CPT0026090001 250685de-21d4-4ae7-b568-540089d7978c.rna_seq.transcriptome.gdc_realn.bam 13406287478 BAM transcriptome harmonized CPTAC3 27ab7428-ab97-47a1-aaf5-929c3bd4dba1 62751a8f3a07dc1d0b3bb7cd4463fccb { 'aliquot_tag': 'ALQ_43253f6d', 'gdc_sample_type': 'Primary Tumor' } C3N-00734.WGS.N C3N-00734 UCEC WGS blood_normal CPT0028500002 CPT0028500002.WholeGenome.RP-1303.bam 60380365868 BAM aligned CPTAC3 c910a937-941a-40c3-ae7a-60b10e1d431d 9943c4e1a2bd20b229b547ee415d51c1 { 'aliquot_tag': 'ALQ_d7cee648', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00734.WGS.N.hg38 C3N-00734 UCEC WGS blood_normal CPT0028500002 d17afc43-9d34-4784-87aa-12c19595d871_gdc_realn.bam 87704873123 BAM harmonized CPTAC3 8a8cced8-56c3-41d5-aaab-2cb28481e9c1 1ddc37d7e7c543d3e9e71d5cd79bd8c9 { 'aliquot_tag': 'ALQ_d7cee648', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00734.WGS.T C3N-00734 UCEC WGS tumor CPT0026030010 CPT0026030010.WholeGenome.RP-1303.bam 63714294069 BAM aligned CPTAC3 a5dbaf32-01b9-49cb-bf04-ad5d55818385 6dfd38205e4b50d02d7f6e45d9c01c2d { 'aliquot_tag': 'ALQ_6789261b', 'gdc_sample_type': 'Primary Tumor' } @@ -22481,12 +24319,12 @@ C3N-00737.miRNA-Seq.T C3N-00737 LUAD miRNA-Seq tumor CPT0090170007 180828_UNC32- C3N-00737.miRNA-Seq.T.hg38 C3N-00737 LUAD miRNA-Seq tumor CPT0090170007 72f6d62c-9789-48c1-8857-feb141779af2_mirnaseq_gdc_realn.bam 270343466 BAM harmonized CPTAC3 899b845e-c859-43fe-a784-10a241551704 471a3f45e9302dd196cbedd532fba6a1 { 'aliquot_tag': 'ALQ_e090def0', 'gdc_sample_type': 'Primary Tumor' } C3N-00737.RNA-Seq.chimeric.A.hg38 C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 d40cf214-0db6-41fb-aa67-566aaa267364.rna_seq.chimeric.gdc_realn.bam 71388572 BAM chimeric harmonized CPTAC3 28ba2aea-8bc7-44a7-80cb-426292597593 c252cca73151618c6c48bc7565792d37 { 'aliquot_tag': 'ALQ_a32340d8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00737.RNA-Seq.chimeric.T.hg38 C3N-00737 LUAD RNA-Seq tumor CPT0090170007 153de713-b53b-48c3-a29a-d05b351355fd.rna_seq.chimeric.gdc_realn.bam 35280661 BAM chimeric harmonized CPTAC3 13f5d040-c163-4022-b40f-b039883129ef d3e0cf03eee5b3fce4123cb2fe4f8d12 { 'aliquot_tag': 'ALQ_e090def0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00737.RNA-Seq.genomic.A.hg38 C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 d40cf214-0db6-41fb-aa67-566aaa267364.rna_seq.genomic.gdc_realn.bam 7117464114 BAM genomic harmonized CPTAC3 727aaa81-a9f9-424e-ae6b-234e5f7be24b 0e2d14bcbcc08a6bd880ecaf2f9d9387 { 'aliquot_tag': 'ALQ_a32340d8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00737.RNA-Seq.genomic.T.hg38 C3N-00737 LUAD RNA-Seq tumor CPT0090170007 153de713-b53b-48c3-a29a-d05b351355fd.rna_seq.genomic.gdc_realn.bam 10221050800 BAM genomic harmonized CPTAC3 b97c8a33-ce54-44a5-95a0-c3a7e95c201a c22fd1f682e4d8b78152e154cb4cc5f3 { 'aliquot_tag': 'ALQ_e090def0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00737.RNA-Seq.R1_L002.T C3N-00737 LUAD RNA-Seq tumor CPT0090170007 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3932735138 FASTQ R1_L002 unaligned CPTAC3 0cf24649-f4d0-499c-b410-101dd0355bdf 5ef82476ead15e70161ebcd0de4edfb4 { 'aliquot_tag': 'ALQ_e090def0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00737.RNA-Seq.R1_L007.A C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L007_R1_001.fastq.gz 3445933848 FASTQ R1_L007 unaligned CPTAC3 26b74818-5c49-4a93-ad0b-d5656b51ac02 0161c0506efa87ec40bbd171dc44ccc1 { 'aliquot_tag': 'ALQ_a32340d8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00737.RNA-Seq.R2_L002.T C3N-00737 LUAD RNA-Seq tumor CPT0090170007 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 4279708360 FASTQ R2_L002 unaligned CPTAC3 ca93f4e9-eb76-4ea8-b818-db5ebd003cb1 6dea5974b633cbc5a6e59785f208267d { 'aliquot_tag': 'ALQ_e090def0', 'gdc_sample_type': 'Primary Tumor' } -C3N-00737.RNA-Seq.R2_L007.A C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L007_R2_001.fastq.gz 3633805992 FASTQ R2_L007 unaligned CPTAC3 b8af1e2c-a7c8-4e2d-9310-b85515af594b b2d8317b123b7a3f8eaa51eaafcbf226 { 'aliquot_tag': 'ALQ_a32340d8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00737.RNA-Seq.genomic.A.hg38 C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 d40cf214-0db6-41fb-aa67-566aaa267364.rna_seq.genomic.gdc_realn.bam 7117464114 BAM genomic harmonized CPTAC3 1bf34b9f-3d5a-46e7-b57a-34a9bc369885 0e2d14bcbcc08a6bd880ecaf2f9d9387 { 'aliquot_tag': 'ALQ_a32340d8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00737.RNA-Seq.genomic.T.hg38 C3N-00737 LUAD RNA-Seq tumor CPT0090170007 153de713-b53b-48c3-a29a-d05b351355fd.rna_seq.genomic.gdc_realn.bam 10221050800 BAM genomic harmonized CPTAC3 9acd2dd7-96b3-4930-b029-4bb7fec01649 c22fd1f682e4d8b78152e154cb4cc5f3 { 'aliquot_tag': 'ALQ_e090def0', 'gdc_sample_type': 'Primary Tumor' } +C3N-00737.RNA-Seq.R1_L002.T C3N-00737 LUAD RNA-Seq tumor CPT0090170007 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3932735138 FASTQ R1_L002 unaligned CPTAC3 0cf24649-f4d0-499c-b410-101dd0355bdf 5ef82476ead15e70161ebcd0de4edfb4 { 'aliquot_tag': 'ALQ_e090def0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00737.RNA-Seq.R1_L007.A C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L007_R1_001.fastq.gz 3445933848 FASTQ R1_L007 unaligned CPTAC3 26b74818-5c49-4a93-ad0b-d5656b51ac02 0161c0506efa87ec40bbd171dc44ccc1 { 'aliquot_tag': 'ALQ_a32340d8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-00737.RNA-Seq.R2_L002.T C3N-00737 LUAD RNA-Seq tumor CPT0090170007 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 4279708360 FASTQ R2_L002 unaligned CPTAC3 ca93f4e9-eb76-4ea8-b818-db5ebd003cb1 6dea5974b633cbc5a6e59785f208267d { 'aliquot_tag': 'ALQ_e090def0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-00737.RNA-Seq.R2_L007.A C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 171212_UNC31-K00269_0102_AHN5MMBBXX_ACAGTG_S17_L007_R2_001.fastq.gz 3633805992 FASTQ R2_L007 unaligned CPTAC3 b8af1e2c-a7c8-4e2d-9310-b85515af594b b2d8317b123b7a3f8eaa51eaafcbf226 { 'aliquot_tag': 'ALQ_a32340d8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-00737.RNA-Seq.transcriptome.A.hg38 C3N-00737 LUAD RNA-Seq tissue_normal CPT0090200006 d40cf214-0db6-41fb-aa67-566aaa267364.rna_seq.transcriptome.gdc_realn.bam 8319978985 BAM transcriptome harmonized CPTAC3 7464fc8b-c3d5-490a-8bec-4a6240c9098e b8e3beb458ce15d2b79dbbd0fd094a64 { 'aliquot_tag': 'ALQ_a32340d8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00737.RNA-Seq.transcriptome.T.hg38 C3N-00737 LUAD RNA-Seq tumor CPT0090170007 153de713-b53b-48c3-a29a-d05b351355fd.rna_seq.transcriptome.gdc_realn.bam 9888296326 BAM transcriptome harmonized CPTAC3 cc7d30e2-a8fb-47d3-aeab-bab9c126e478 9f273a96dbf9f9fdbf6f5cf95404c148 { 'aliquot_tag': 'ALQ_e090def0', 'gdc_sample_type': 'Primary Tumor' } C3N-00737.WGS.A C3N-00737 LUAD WGS tissue_normal CPT0090200008 CPT0090200008.WholeGenome.RP-1303.bam 53856792697 BAM aligned CPTAC3 07ededa8-b079-43d7-87b1-2cd20d4fd449 556e3f2e0be2ab20f7218d067d45ab36 { 'aliquot_tag': 'ALQ_449b6ddf', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -22502,6 +24340,7 @@ C3N-00737.WXS.N.hg38 C3N-00737 LUAD WXS blood_normal CPT0091440002 fec6902d-836e C3N-00737.WXS.T C3N-00737 LUAD WXS tumor CPT0090170010 CPT0090170010.WholeExome.RP-1303.bam 34767878710 BAM aligned CPTAC3 170c6129-9f38-499b-a528-b59eecd02273 21bd571e9765e79658474498b03b0286 { 'aliquot_tag': 'ALQ_67ef7a12', 'gdc_sample_type': 'Primary Tumor' } C3N-00737.WXS.T.hg38 C3N-00737 LUAD WXS tumor CPT0090170010 0bf8d63d-3245-4ce1-8aab-f1fd4c0d94f6_wxs_gdc_realn.bam 46700398588 BAM harmonized CPTAC3 05e7eacc-00d3-4660-9c77-6bf1c2d66645 34e647092639e4f5bc6b0b82d6190b6d { 'aliquot_tag': 'ALQ_67ef7a12', 'gdc_sample_type': 'Primary Tumor' } C3N-00738.DUP_5d166d88.WGS.T C3N-00738 LUAD WGS tumor CPT0112060009_2 CPT0112060009_2.WholeGenome.RP-2158.bam 154077440808 BAM aligned CPTAC3 94a31beb-521c-44b1-b306-9d0532bbd7d4 cceb8d50b2f7ad07cabad64ea6dfd7d1 { 'aliquot_tag': 'DUP_5d166d88', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters' } +C3N-00738.DUP_5d166d88.WGS.T.hg38 C3N-00738 LUAD WGS tumor CPT0112060009_2 f841b8b6-56fe-480c-8f34-d15a55acc14b_wgs_gdc_realn.bam 463286204766 BAM harmonized CPTAC3 116d9a61-1509-487b-ba1d-ffbb4c674bd0 2b299366f5e9d0aae8e9298ff6599c81 { 'aliquot_tag': 'DUP_5d166d88', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Supplementary DNA Aliquot;This entity was not yet authorized to be released by the submitters' } C3N-00738.MethArray.Green.A C3N-00738 LUAD Methylation Array tissue_normal CPT0112080009 203028200104_R04C01_Grn.idat 13676235 IDAT Green NA CPTAC3 d698d456-1bb2-45d6-8fb8-ad0defd06f10 f7034fcf8b8323fe84bdce6b3db07f3c { 'aliquot_tag': 'ALQ_1d25a95c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00738.MethArray.Green.T C3N-00738 LUAD Methylation Array tumor CPT0112060009 202234380061_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 f87a6472-ced1-49ec-8afb-0e9635927e31 41af4d424a4efb143da487378c77fd01 { 'aliquot_tag': 'ALQ_a215173d', 'gdc_sample_type': 'Primary Tumor' } C3N-00738.MethArray.Red.A C3N-00738 LUAD Methylation Array tissue_normal CPT0112080009 203028200104_R04C01_Red.idat 13676235 IDAT Red NA CPTAC3 1dc9dd5b-03e1-4455-819a-262846683059 e3f06bfa00868c845829e98c863d862a { 'aliquot_tag': 'ALQ_1d25a95c', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -22513,11 +24352,11 @@ C3N-00738.miRNA-Seq.T.hg38 C3N-00738 LUAD miRNA-Seq tumor CPT0112060006 acedee26 C3N-00738.RNA-Seq.chimeric.A.hg38 C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 ce3ed392-b8bb-4f54-9718-7bae5b148d63.rna_seq.chimeric.gdc_realn.bam 82807079 BAM chimeric harmonized CPTAC3 76a953dc-eb3a-454e-b423-6127409d7c29 66b5c7c6c18c699e775f4d9a8764165b { 'aliquot_tag': 'ALQ_8d9ab4cd', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00738.RNA-Seq.chimeric.T.hg38 C3N-00738 LUAD RNA-Seq tumor CPT0112060006 65575a51-6350-4bf5-96b8-ca2062fbf511.rna_seq.chimeric.gdc_realn.bam 110878787 BAM chimeric harmonized CPTAC3 606f76a5-5c6c-495c-9ba2-89da45139cd9 5b22d506270ef619bbc889f10dba5333 { 'aliquot_tag': 'ALQ_32aa0aac', 'gdc_sample_type': 'Primary Tumor' } C3N-00738.RNA-Seq.genomic.A.hg38 C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 ce3ed392-b8bb-4f54-9718-7bae5b148d63.rna_seq.genomic.gdc_realn.bam 8503007402 BAM genomic harmonized CPTAC3 5d0f1a8b-8ea6-42c8-a8a6-3fec8d799b54 c7bd4c0b245d998e30a4f17f03471157 { 'aliquot_tag': 'ALQ_8d9ab4cd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00738.RNA-Seq.genomic.T.hg38 C3N-00738 LUAD RNA-Seq tumor CPT0112060006 65575a51-6350-4bf5-96b8-ca2062fbf511.rna_seq.genomic.gdc_realn.bam 9410522822 BAM genomic harmonized CPTAC3 b8858116-03a6-4a21-9599-cf2f0d1e1be7 c08c1669a23c4a65d0d26532a9c1edc7 { 'aliquot_tag': 'ALQ_32aa0aac', 'gdc_sample_type': 'Primary Tumor' } -C3N-00738.RNA-Seq.R1_L005.T C3N-00738 LUAD RNA-Seq tumor CPT0112060006 171109_UNC31-K00269_0091_BHMFGTBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3825955251 FASTQ R1_L005 unaligned CPTAC3 c03373bb-4980-4327-af54-3ce878036954 d7e3f3a0d8b47b42be7fc4bf8162ce95 { 'aliquot_tag': 'ALQ_32aa0aac', 'gdc_sample_type': 'Primary Tumor' } -C3N-00738.RNA-Seq.R1_L008.A C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 180103_UNC31-K00269_0105_AHNFGGBBXX_AGTCAA_S80_L008_R1_001.fastq.gz 4068920168 FASTQ R1_L008 unaligned CPTAC3 b8e3505e-43ad-4883-99b3-fc6b1db5630a c08ead3a0c40643e94ad47a9b1c13d5f { 'aliquot_tag': 'ALQ_8d9ab4cd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00738.RNA-Seq.R2_L005.T C3N-00738 LUAD RNA-Seq tumor CPT0112060006 171109_UNC31-K00269_0091_BHMFGTBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4322051244 FASTQ R2_L005 unaligned CPTAC3 813ce019-4a21-49cc-8e0f-ea7b756a0098 9558daba2b3bbc005ae7c6d4f30ebadf { 'aliquot_tag': 'ALQ_32aa0aac', 'gdc_sample_type': 'Primary Tumor' } -C3N-00738.RNA-Seq.R2_L008.A C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 180103_UNC31-K00269_0105_AHNFGGBBXX_AGTCAA_S80_L008_R2_001.fastq.gz 4363912702 FASTQ R2_L008 unaligned CPTAC3 ceddd54a-d07f-49ea-a755-4a0ea3be8eb9 72553bf99b92d3ce5a4947d43ced57a4 { 'aliquot_tag': 'ALQ_8d9ab4cd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00738.RNA-Seq.genomic.T.hg38 C3N-00738 LUAD RNA-Seq tumor CPT0112060006 65575a51-6350-4bf5-96b8-ca2062fbf511.rna_seq.genomic.gdc_realn.bam 9410522822 BAM genomic harmonized CPTAC3 fab1da6f-bec2-4771-ac6a-aa94125a45aa c08c1669a23c4a65d0d26532a9c1edc7 { 'aliquot_tag': 'ALQ_32aa0aac', 'gdc_sample_type': 'Primary Tumor' } +C3N-00738.RNA-Seq.R1_L005.T C3N-00738 LUAD RNA-Seq tumor CPT0112060006 171109_UNC31-K00269_0091_BHMFGTBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3825955251 FASTQ R1_L005 unaligned CPTAC3 c03373bb-4980-4327-af54-3ce878036954 d7e3f3a0d8b47b42be7fc4bf8162ce95 { 'aliquot_tag': 'ALQ_32aa0aac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00738.RNA-Seq.R1_L008.A C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 180103_UNC31-K00269_0105_AHNFGGBBXX_AGTCAA_S80_L008_R1_001.fastq.gz 4068920168 FASTQ R1_L008 unaligned CPTAC3 b8e3505e-43ad-4883-99b3-fc6b1db5630a c08ead3a0c40643e94ad47a9b1c13d5f { 'aliquot_tag': 'ALQ_8d9ab4cd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00738.RNA-Seq.R2_L005.T C3N-00738 LUAD RNA-Seq tumor CPT0112060006 171109_UNC31-K00269_0091_BHMFGTBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4322051244 FASTQ R2_L005 unaligned CPTAC3 813ce019-4a21-49cc-8e0f-ea7b756a0098 9558daba2b3bbc005ae7c6d4f30ebadf { 'aliquot_tag': 'ALQ_32aa0aac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00738.RNA-Seq.R2_L008.A C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 180103_UNC31-K00269_0105_AHNFGGBBXX_AGTCAA_S80_L008_R2_001.fastq.gz 4363912702 FASTQ R2_L008 unaligned CPTAC3 ceddd54a-d07f-49ea-a755-4a0ea3be8eb9 72553bf99b92d3ce5a4947d43ced57a4 { 'aliquot_tag': 'ALQ_8d9ab4cd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00738.RNA-Seq.transcriptome.A.hg38 C3N-00738 LUAD RNA-Seq tissue_normal CPT0112080006 ce3ed392-b8bb-4f54-9718-7bae5b148d63.rna_seq.transcriptome.gdc_realn.bam 9882113482 BAM transcriptome harmonized CPTAC3 61ee7722-ac5f-4f76-bb7d-52a0952f92cc d1176d02be0ed0a3e893a20250875c61 { 'aliquot_tag': 'ALQ_8d9ab4cd', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00738.RNA-Seq.transcriptome.T.hg38 C3N-00738 LUAD RNA-Seq tumor CPT0112060006 65575a51-6350-4bf5-96b8-ca2062fbf511.rna_seq.transcriptome.gdc_realn.bam 9549015173 BAM transcriptome harmonized CPTAC3 847a44f1-860d-4941-9fd3-61d0f01c40fa d3d6a89722b1dc122ef36e603603ab53 { 'aliquot_tag': 'ALQ_32aa0aac', 'gdc_sample_type': 'Primary Tumor' } C3N-00738.WGS.A C3N-00738 LUAD WGS tissue_normal CPT0112080009 CPT0112080009.WholeGenome.RP-1303.bam 56296939058 BAM aligned CPTAC3 93abc092-48ea-46af-8a32-89742efc592c 9847e9ba02595d0726f106e18de100a3 { 'aliquot_tag': 'ALQ_1d25a95c', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -22537,12 +24376,15 @@ C3N-00743.MethArray.Red.T C3N-00743 UCEC Methylation Array tumor CPT0062940009 2 C3N-00743.miRNA-Seq.T C3N-00743 UCEC miRNA-Seq tumor CPT0062940006 181119_UNC31-K00269_0165_AH27WCBBXY_TCGGCA_S24_L005_R1_001.unaln.bam 185922173 BAM unaligned CPTAC3 b8164afc-b7ee-463d-8645-7cf4340c561a 6ebaf6e4187b7efe152e7a794fab78ef { 'aliquot_tag': 'ALQ_72db155e', 'gdc_sample_type': 'Primary Tumor' } C3N-00743.miRNA-Seq.T.hg38 C3N-00743 UCEC miRNA-Seq tumor CPT0062940006 b342de54-a3e0-49ff-be98-34d7a388ab3d_mirnaseq_gdc_realn.bam 205293911 BAM harmonized CPTAC3 96f02882-662c-4384-a49b-1eda0ad3da5b c231d9279185e816042ff1bf247a71a1 { 'aliquot_tag': 'ALQ_72db155e', 'gdc_sample_type': 'Primary Tumor' } C3N-00743.RNA-Seq.chimeric.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062940006 93b38022-dab2-4aeb-bb3c-0833cbeee37a.rna_seq.chimeric.gdc_realn.bam 117501617 BAM chimeric harmonized CPTAC3 2fe1decd-1e68-4f75-beb6-512a7ff83dab 4cb5928e51640791b427d3ef41f2a148 { 'aliquot_tag': 'ALQ_72db155e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00743.RNA-Seq.genomic.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062940006 93b38022-dab2-4aeb-bb3c-0833cbeee37a.rna_seq.genomic.gdc_realn.bam 14105392292 BAM genomic harmonized CPTAC3 80305517-ec15-4cf8-a483-8a09a25a8d5c d0fcaacef99a3aa2baf1a4e16466e71f { 'aliquot_tag': 'ALQ_72db155e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00743.RNA-Seq.R1_L004.T C3N-00743 UCEC RNA-Seq tumor CPT0062940006 170823_UNC31-K00269_0076_BHLCTFBBXX_CTTGTA_S13_L004_R1_001.fastq.gz 6290703955 FASTQ R1_L004 unaligned CPTAC3 a7609db0-2819-4dc0-9988-4a1323d15135 4707ee02fe01df226102dfedb02e04dd { 'aliquot_tag': 'ALQ_72db155e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00743.RNA-Seq.R1_.T C3N-00743 UCEC RNA-Seq tumor CPT0062980001 20210714_P1_A11_WB7988_plate1_S11_R1_001.fastq.gz 4144866693 FASTQ R1_ unaligned CPTAC3 d6e94cf3-7548-4ce5-886a-495c49b561c5 289f872f629dbeb124f2cab43dea3cb5 { 'aliquot_tag': 'ALQ_294f6dfc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00743.RNA-Seq.R2_L004.T C3N-00743 UCEC RNA-Seq tumor CPT0062940006 170823_UNC31-K00269_0076_BHLCTFBBXX_CTTGTA_S13_L004_R2_001.fastq.gz 6842240946 FASTQ R2_L004 unaligned CPTAC3 b10f3be4-53ec-4526-96d5-050e3a0eebe7 fc77095ab4a11526e6f8f47405a176fc { 'aliquot_tag': 'ALQ_72db155e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00743.RNA-Seq.R2_.T C3N-00743 UCEC RNA-Seq tumor CPT0062980001 20210714_P1_A11_WB7988_plate1_S11_R2_001.fastq.gz 4335783692 FASTQ R2_ unaligned CPTAC3 dfda38f9-55cf-444f-b70a-8e173508b37f 043b8688380691cb7313b05dd8f131f1 { 'aliquot_tag': 'ALQ_294f6dfc', 'gdc_sample_type': 'Primary Tumor' } +C3N-00743.RNA-Seq.chimeric.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062980001 c9121b65-c539-4f45-9f3c-334c85aa1cd0.rna_seq.chimeric.gdc_realn.bam 105079699 BAM chimeric harmonized CPTAC3 340daef7-6fd0-4c61-9cb4-f60a61b10d48 97ef46a45e730add906e9412b7971288 { 'aliquot_tag': 'ALQ_294f6dfc', 'gdc_sample_type': 'Primary Tumor' } +C3N-00743.RNA-Seq.genomic.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062940006 93b38022-dab2-4aeb-bb3c-0833cbeee37a.rna_seq.genomic.gdc_realn.bam 14105392292 BAM genomic harmonized CPTAC3 4e63eef5-a08e-4b2b-930f-18cd2fbc783f d0fcaacef99a3aa2baf1a4e16466e71f { 'aliquot_tag': 'ALQ_72db155e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00743.RNA-Seq.genomic.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062980001 c9121b65-c539-4f45-9f3c-334c85aa1cd0.rna_seq.genomic.gdc_realn.bam 6839504753 BAM genomic harmonized CPTAC3 426dfcae-c093-4a16-95d3-e5a36919fb89 cb4d6fd63d2b5a77b73670c168081031 { 'aliquot_tag': 'ALQ_294f6dfc', 'gdc_sample_type': 'Primary Tumor' } +C3N-00743.RNA-Seq.R1_L004.T C3N-00743 UCEC RNA-Seq tumor CPT0062940006 170823_UNC31-K00269_0076_BHLCTFBBXX_CTTGTA_S13_L004_R1_001.fastq.gz 6290703955 FASTQ R1_L004 unaligned CPTAC3 a7609db0-2819-4dc0-9988-4a1323d15135 4707ee02fe01df226102dfedb02e04dd { 'aliquot_tag': 'ALQ_72db155e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00743.RNA-Seq.R2_L004.T C3N-00743 UCEC RNA-Seq tumor CPT0062940006 170823_UNC31-K00269_0076_BHLCTFBBXX_CTTGTA_S13_L004_R2_001.fastq.gz 6842240946 FASTQ R2_L004 unaligned CPTAC3 b10f3be4-53ec-4526-96d5-050e3a0eebe7 fc77095ab4a11526e6f8f47405a176fc { 'aliquot_tag': 'ALQ_72db155e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00743.RNA-Seq.T C3N-00743 UCEC RNA-Seq tumor CPT0062980001 20210714_P1_A11_WB7988_plate1_S11_R1_001.fastq.gz 4144866693 FASTQ unaligned CPTAC3 d6e94cf3-7548-4ce5-886a-495c49b561c5 289f872f629dbeb124f2cab43dea3cb5 +C3N-00743.RNA-Seq.T C3N-00743 UCEC RNA-Seq tumor CPT0062980001 20210714_P1_A11_WB7988_plate1_S11_R2_001.fastq.gz 4335783692 FASTQ unaligned CPTAC3 dfda38f9-55cf-444f-b70a-8e173508b37f 043b8688380691cb7313b05dd8f131f1 C3N-00743.RNA-Seq.transcriptome.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062940006 93b38022-dab2-4aeb-bb3c-0833cbeee37a.rna_seq.transcriptome.gdc_realn.bam 14122899198 BAM transcriptome harmonized CPTAC3 caf7d055-7d4c-4516-a651-e6c294c8e6ac 793f1ef713c0e9c1697e77b862b7dbe8 { 'aliquot_tag': 'ALQ_72db155e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00743.RNA-Seq.transcriptome.T.hg38 C3N-00743 UCEC RNA-Seq tumor CPT0062980001 c9121b65-c539-4f45-9f3c-334c85aa1cd0.rna_seq.transcriptome.gdc_realn.bam 4333795800 BAM transcriptome harmonized CPTAC3 c1cc08aa-e439-47ae-8efe-30c9bc11dd29 2a486feaafe8f1b94b83a78c4ee3d8e5 { 'aliquot_tag': 'ALQ_294f6dfc', 'gdc_sample_type': 'Primary Tumor' } C3N-00743.WGS.N C3N-00743 UCEC WGS blood_normal CPT0063060002 CPT0063060002.WholeGenome.RP-1303.bam 67426258189 BAM aligned CPTAC3 294659f1-3e67-4645-b3d4-39c93b22212c e930718b56e699025eb80b28a8e191e2 { 'aliquot_tag': 'ALQ_8e0ed85b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00743.WGS.N.hg38 C3N-00743 UCEC WGS blood_normal CPT0063060002 5b71b4cf-7f14-42ec-bbe6-58842e3efd3f_gdc_realn.bam 101981112099 BAM harmonized CPTAC3 d062478a-4524-4ba8-b2d6-f50395fcc112 c116ee9850ac75ec3b6fb84b0b9eead0 { 'aliquot_tag': 'ALQ_8e0ed85b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00743.WGS.T C3N-00743 UCEC WGS tumor CPT0062940009 CPT0062940009.WholeGenome.RP-1303.bam 78756011146 BAM aligned CPTAC3 91ae7713-8b1c-423a-9c27-f6ade0a04ce7 11c381770b066fe7278cf2ad27ba6f7c { 'aliquot_tag': 'ALQ_e26408cf', 'gdc_sample_type': 'Primary Tumor' } @@ -22555,13 +24397,16 @@ C3N-00750.MethArray.Green.T C3N-00750 UCEC Methylation Array tumor CPT0265110006 C3N-00750.MethArray.Red.T C3N-00750 UCEC Methylation Array tumor CPT0265110006 203561620132_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 c0ea9fc7-b9e0-45bd-80f1-f645b5fbed31 0c60edd9936abbfd6a03869447704599 { 'aliquot_tag': 'ALQ_bd390e4b', 'gdc_sample_type': 'Primary Tumor' } C3N-00750.miRNA-Seq.T C3N-00750 UCEC miRNA-Seq tumor CPT0265110009 190508_UNC31-K00269_0215_BH7FYKBBXY_TAGCTT_S10_L001_R1_001.unaln.bam 202438751 BAM unaligned CPTAC3 27bb27a9-312d-4034-b420-db39f2b9e801 fc4535813856217de53ca199ce2f9562 { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor' } C3N-00750.miRNA-Seq.T.hg38 C3N-00750 UCEC miRNA-Seq tumor CPT0265110009 3916a8ce-6d24-416e-b429-64cfb761e3cd_mirnaseq_gdc_realn.bam 223504697 BAM harmonized CPTAC3 feb68dee-1b33-4b0d-82df-b96a23422841 efc6f37ec560f2d2813f41d6559f6b53 { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor' } -C3N-00750.RNA-Seq.chimeric.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 132ca227-a671-4957-9e9a-fc86f88d3d04.rna_seq.chimeric.gdc_realn.bam 35881125 BAM chimeric harmonized CPTAC3 8c03748c-b2e9-4efd-8309-dd12b9388ec8 b04ade3b11a21f856e2f746a90a3fcb4 { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor' } -C3N-00750.RNA-Seq.genomic.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 132ca227-a671-4957-9e9a-fc86f88d3d04.rna_seq.genomic.gdc_realn.bam 9264533719 BAM genomic harmonized CPTAC3 6b763c54-2cff-4bb6-8f37-3c793986fdd4 f2669444c7f3d41ec3250aff33893274 { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor' } -C3N-00750.RNA-Seq.R1_L005.T C3N-00750 UCEC RNA-Seq tumor CPT0265110009 190426_UNC32-K00270_0167_AH7CK7BBXY_GACCTGAA-TTGGTGAG_S18_L005_R1_001.fastq.gz 4455470146 FASTQ R1_L005 unaligned CPTAC3 107e045d-80db-4cae-ae65-2d9fd8ed9a37 c37e3ca7e528ea6f7a85e19ab8a4f1c9 { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor' } -C3N-00750.RNA-Seq.R1_.T C3N-00750 UCEC RNA-Seq tumor CPT0265140001 20210723_P2_B10_WB7988-plate2_S22_R1_001.fastq.gz 8555561468 FASTQ R1_ unaligned CPTAC3 a45e880b-ae16-452b-b804-ca208328a10f 320bebb8c44a07b3e944a9a0a4d04809 { 'aliquot_tag': 'ALQ_ebbd1498', 'gdc_sample_type': 'Primary Tumor' } -C3N-00750.RNA-Seq.R2_L005.T C3N-00750 UCEC RNA-Seq tumor CPT0265110009 190426_UNC32-K00270_0167_AH7CK7BBXY_GACCTGAA-TTGGTGAG_S18_L005_R2_001.fastq.gz 4965615771 FASTQ R2_L005 unaligned CPTAC3 f53a602d-e6ab-4c89-af46-18c369e43fd9 15cb7b4ab88a6e4d134f5ff933c72431 { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor' } -C3N-00750.RNA-Seq.R2_.T C3N-00750 UCEC RNA-Seq tumor CPT0265140001 20210723_P2_B10_WB7988-plate2_S22_R2_001.fastq.gz 8874799007 FASTQ R2_ unaligned CPTAC3 feacb950-f77b-4e6b-8aba-bb5d6e07ae9f cb8f23778c7f7d631bf66e512f29d8b9 { 'aliquot_tag': 'ALQ_ebbd1498', 'gdc_sample_type': 'Primary Tumor' } -C3N-00750.RNA-Seq.transcriptome.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 132ca227-a671-4957-9e9a-fc86f88d3d04.rna_seq.transcriptome.gdc_realn.bam 11615061864 BAM transcriptome harmonized CPTAC3 cf89ae91-e147-43d8-95e7-8e570f2ecfb3 6172e0f85d2add2a30af0ab891e75193 { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor' } +C3N-00750.RNA-Seq.chimeric.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 6edd43b9-840f-4ff6-91da-5606659a40bc.rna_seq.chimeric.gdc_realn.bam 35878282 BAM chimeric harmonized CPTAC3 72bd5b77-0e3b-41c1-ab03-5221d9723c6c 50b8965431fc795ac8a713438f95ac6e { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor' } +C3N-00750.RNA-Seq.chimeric.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265140001 f2f57d89-82de-4ec2-b216-bcbc3fba6c45.rna_seq.chimeric.gdc_realn.bam 279812419 BAM chimeric harmonized CPTAC3 862c902c-ef82-451c-aa6c-fcd42bdcaf9e 52604b458cc82f9a2efc7b39790d8923 { 'aliquot_tag': 'ALQ_ebbd1498', 'gdc_sample_type': 'Primary Tumor' } +C3N-00750.RNA-Seq.genomic.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 6edd43b9-840f-4ff6-91da-5606659a40bc.rna_seq.genomic.gdc_realn.bam 9265729111 BAM genomic harmonized CPTAC3 accf95b6-24b6-4c45-b0b6-5b6f4664518a 34b30c2bed64126c21d9570e5efe7f3b { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor' } +C3N-00750.RNA-Seq.genomic.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265140001 f2f57d89-82de-4ec2-b216-bcbc3fba6c45.rna_seq.genomic.gdc_realn.bam 14600195628 BAM genomic harmonized CPTAC3 c53f4c84-8374-4a9e-a8b4-331ee64d522a 1d5f6fb69db6066dd2fe595b0b6d13e0 { 'aliquot_tag': 'ALQ_ebbd1498', 'gdc_sample_type': 'Primary Tumor' } +C3N-00750.RNA-Seq.R1_L005.T C3N-00750 UCEC RNA-Seq tumor CPT0265110009 190426_UNC32-K00270_0167_AH7CK7BBXY_GACCTGAA-TTGGTGAG_S18_L005_R1_001.fastq.gz 4455470146 FASTQ R1_L005 unaligned CPTAC3 107e045d-80db-4cae-ae65-2d9fd8ed9a37 c37e3ca7e528ea6f7a85e19ab8a4f1c9 { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00750.RNA-Seq.R2_L005.T C3N-00750 UCEC RNA-Seq tumor CPT0265110009 190426_UNC32-K00270_0167_AH7CK7BBXY_GACCTGAA-TTGGTGAG_S18_L005_R2_001.fastq.gz 4965615771 FASTQ R2_L005 unaligned CPTAC3 f53a602d-e6ab-4c89-af46-18c369e43fd9 15cb7b4ab88a6e4d134f5ff933c72431 { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00750.RNA-Seq.T C3N-00750 UCEC RNA-Seq tumor CPT0265140001 20210723_P2_B10_WB7988-plate2_S22_R1_001.fastq.gz 8555561468 FASTQ unaligned CPTAC3 a45e880b-ae16-452b-b804-ca208328a10f 320bebb8c44a07b3e944a9a0a4d04809 +C3N-00750.RNA-Seq.T C3N-00750 UCEC RNA-Seq tumor CPT0265140001 20210723_P2_B10_WB7988-plate2_S22_R2_001.fastq.gz 8874799007 FASTQ unaligned CPTAC3 feacb950-f77b-4e6b-8aba-bb5d6e07ae9f cb8f23778c7f7d631bf66e512f29d8b9 +C3N-00750.RNA-Seq.transcriptome.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265110009 6edd43b9-840f-4ff6-91da-5606659a40bc.rna_seq.transcriptome.gdc_realn.bam 13298999674 BAM transcriptome harmonized CPTAC3 4255281f-842a-4d8a-9280-1e12f6bc8b62 96875250dd1bbd2dfc4278eb11dbfcc0 { 'aliquot_tag': 'ALQ_2d8613da', 'gdc_sample_type': 'Primary Tumor' } +C3N-00750.RNA-Seq.transcriptome.T.hg38 C3N-00750 UCEC RNA-Seq tumor CPT0265140001 f2f57d89-82de-4ec2-b216-bcbc3fba6c45.rna_seq.transcriptome.gdc_realn.bam 9707867162 BAM transcriptome harmonized CPTAC3 759aff90-5c21-4b21-b771-1da272cdd741 8a11f16c2158a4a406da6d46d3136263 { 'aliquot_tag': 'ALQ_ebbd1498', 'gdc_sample_type': 'Primary Tumor' } C3N-00750.WGS.N C3N-00750 UCEC WGS blood_normal CPT0264020002 CPT0264020002.WholeGenome.RP-1303.bam 70759765995 BAM aligned CPTAC3 1ae69857-824b-43b4-b35e-ce5f16fa7ab8 2ad79b771809527860b689cc9a7fd2fb { 'aliquot_tag': 'ALQ_90df6893', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00750.WGS.N.hg38 C3N-00750 UCEC WGS blood_normal CPT0264020002 6b65cbd6-63f7-4874-84de-9b976d0b7719_wgs_gdc_realn.bam 105702267632 BAM harmonized CPTAC3 a00793a7-3546-43bf-8c3f-0c752a8a9d8f 0cf38b0d594706c05eef71fe5747bf21 { 'aliquot_tag': 'ALQ_90df6893', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00750.WGS.T C3N-00750 UCEC WGS tumor CPT0265110006 CPT0265110006.WholeGenome.RP-1303.bam 75090284608 BAM aligned CPTAC3 189cd0d8-aed4-462f-9f1d-25d9ca182829 c1026cfe1e579bf466c14d2d302f955c { 'aliquot_tag': 'ALQ_bd390e4b', 'gdc_sample_type': 'Primary Tumor' } @@ -22574,13 +24419,16 @@ C3N-00753.MethArray.Green.T C3N-00753 UCEC Methylation Array tumor CPT0129640006 C3N-00753.MethArray.Red.T C3N-00753 UCEC Methylation Array tumor CPT0129640006 203220070100_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 68f56008-9831-4ee1-be18-b7e30d3452e6 955af45b8bfbeb481ee09b3e35c7f863 { 'aliquot_tag': 'ALQ_12bbe9c8', 'gdc_sample_type': 'Primary Tumor' } C3N-00753.miRNA-Seq.T C3N-00753 UCEC miRNA-Seq tumor CPT0129640009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGGCC_S20_L004_R1_001.unaln.bam 216875172 BAM unaligned CPTAC3 70c7b5e7-0eab-421f-86ed-612ce4c209c5 339941a92410f46ce3dd40324787980b { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor' } C3N-00753.miRNA-Seq.T.hg38 C3N-00753 UCEC miRNA-Seq tumor CPT0129640009 204e951d-6c75-4687-856b-6460f194697c_mirnaseq_gdc_realn.bam 244274307 BAM harmonized CPTAC3 d80fe401-27a5-42c3-b267-3f8e4bc66da1 e83002e01f37ee96c3d68935efd9f720 { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor' } -C3N-00753.RNA-Seq.chimeric.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 30171e84-f8ab-48b6-8267-c08efbb25421.rna_seq.chimeric.gdc_realn.bam 104058920 BAM chimeric harmonized CPTAC3 e317d0f1-4144-4c4e-95a2-788b82669c97 9f2632fac997dbcee0d3e7b9a5a90678 { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor' } -C3N-00753.RNA-Seq.genomic.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 30171e84-f8ab-48b6-8267-c08efbb25421.rna_seq.genomic.gdc_realn.bam 9075776507 BAM genomic harmonized CPTAC3 ec5d55fa-3660-4a4e-89fa-1dd329975312 9c95a0829a3064069db5eaab005e4a41 { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor' } -C3N-00753.RNA-Seq.R1_L005.T C3N-00753 UCEC RNA-Seq tumor CPT0129640009 190115_UNC31-K00269_0179_BH357YBBXY_GTTTCG_S15_L005_R1_001.fastq.gz 3991757824 FASTQ R1_L005 unaligned CPTAC3 24a62044-5b9f-4f12-83e7-ef19d3e94edd d17587a3e9b582ad38d8463966f03e22 { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor' } -C3N-00753.RNA-Seq.R1_.T C3N-00753 UCEC RNA-Seq tumor CPT0129680001 20210729_P3_B11_WB7988-Plate3_S23_R1_001.fastq.gz 2934024253 FASTQ R1_ unaligned CPTAC3 7dfc318c-40b8-4d10-8df0-b4745d705e0f bdc9c6135d2bf2850f8f6c7a5d2a34d1 { 'aliquot_tag': 'ALQ_492f916a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00753.RNA-Seq.R2_L005.T C3N-00753 UCEC RNA-Seq tumor CPT0129640009 190115_UNC31-K00269_0179_BH357YBBXY_GTTTCG_S15_L005_R2_001.fastq.gz 4428498913 FASTQ R2_L005 unaligned CPTAC3 2b42b14f-d176-4c12-840e-cf8a57755bd1 afbc9cfd1740a4d25b47c3d37edbe603 { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor' } -C3N-00753.RNA-Seq.R2_.T C3N-00753 UCEC RNA-Seq tumor CPT0129680001 20210729_P3_B11_WB7988-Plate3_S23_R2_001.fastq.gz 3028231506 FASTQ R2_ unaligned CPTAC3 30e6eba4-380f-4da8-a254-540f61540ae9 da79c9354f9653d8c37bac307dc23f75 { 'aliquot_tag': 'ALQ_492f916a', 'gdc_sample_type': 'Primary Tumor' } -C3N-00753.RNA-Seq.transcriptome.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 30171e84-f8ab-48b6-8267-c08efbb25421.rna_seq.transcriptome.gdc_realn.bam 8757139861 BAM transcriptome harmonized CPTAC3 3b225c59-72c5-4d92-bea5-c94d15c4d4f9 4e9036ed0c2cc3a513174e9a859b693f { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor' } +C3N-00753.RNA-Seq.chimeric.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 3fcb02d5-7f05-4a13-ab98-1a80bf50fd2b.rna_seq.chimeric.gdc_realn.bam 104049847 BAM chimeric harmonized CPTAC3 4bbfde5f-34fc-4e3e-ae87-db11786ba85c 0ed01ded1e2dda096495e10b3020768c { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor' } +C3N-00753.RNA-Seq.chimeric.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129680001 470817cd-7eec-40eb-a2bc-355c13dcde17.rna_seq.chimeric.gdc_realn.bam 49102898 BAM chimeric harmonized CPTAC3 5ea035db-50a3-4739-bf35-2ab9dc77a2e6 b38cba4a1513f076232b734bd4fa4c39 { 'aliquot_tag': 'ALQ_492f916a', 'gdc_sample_type': 'Primary Tumor' } +C3N-00753.RNA-Seq.genomic.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 3fcb02d5-7f05-4a13-ab98-1a80bf50fd2b.rna_seq.genomic.gdc_realn.bam 9077381414 BAM genomic harmonized CPTAC3 82c25c09-23a3-4df9-b648-2896974bfd2d 7fcfb5af8124c83d33ecda56dff0e729 { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor' } +C3N-00753.RNA-Seq.genomic.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129680001 470817cd-7eec-40eb-a2bc-355c13dcde17.rna_seq.genomic.gdc_realn.bam 5503520862 BAM genomic harmonized CPTAC3 bc53f6e2-e18b-4c48-a530-557b2be3dbec 550f1f3f91b15c326a2d3052275a03bf { 'aliquot_tag': 'ALQ_492f916a', 'gdc_sample_type': 'Primary Tumor' } +C3N-00753.RNA-Seq.R1_L005.T C3N-00753 UCEC RNA-Seq tumor CPT0129640009 190115_UNC31-K00269_0179_BH357YBBXY_GTTTCG_S15_L005_R1_001.fastq.gz 3991757824 FASTQ R1_L005 unaligned CPTAC3 24a62044-5b9f-4f12-83e7-ef19d3e94edd d17587a3e9b582ad38d8463966f03e22 { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00753.RNA-Seq.R2_L005.T C3N-00753 UCEC RNA-Seq tumor CPT0129640009 190115_UNC31-K00269_0179_BH357YBBXY_GTTTCG_S15_L005_R2_001.fastq.gz 4428498913 FASTQ R2_L005 unaligned CPTAC3 2b42b14f-d176-4c12-840e-cf8a57755bd1 afbc9cfd1740a4d25b47c3d37edbe603 { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00753.RNA-Seq.T C3N-00753 UCEC RNA-Seq tumor CPT0129680001 20210729_P3_B11_WB7988-Plate3_S23_R1_001.fastq.gz 2934024253 FASTQ unaligned CPTAC3 7dfc318c-40b8-4d10-8df0-b4745d705e0f bdc9c6135d2bf2850f8f6c7a5d2a34d1 +C3N-00753.RNA-Seq.T C3N-00753 UCEC RNA-Seq tumor CPT0129680001 20210729_P3_B11_WB7988-Plate3_S23_R2_001.fastq.gz 3028231506 FASTQ unaligned CPTAC3 30e6eba4-380f-4da8-a254-540f61540ae9 da79c9354f9653d8c37bac307dc23f75 +C3N-00753.RNA-Seq.transcriptome.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129640009 3fcb02d5-7f05-4a13-ab98-1a80bf50fd2b.rna_seq.transcriptome.gdc_realn.bam 9933082228 BAM transcriptome harmonized CPTAC3 8fcd2b6d-7ced-492b-bd24-dae4cf1c9dd6 6f21388866dcbee51a46b86306d1e563 { 'aliquot_tag': 'ALQ_8204f459', 'gdc_sample_type': 'Primary Tumor' } +C3N-00753.RNA-Seq.transcriptome.T.hg38 C3N-00753 UCEC RNA-Seq tumor CPT0129680001 470817cd-7eec-40eb-a2bc-355c13dcde17.rna_seq.transcriptome.gdc_realn.bam 2787027058 BAM transcriptome harmonized CPTAC3 1afb82a6-bbe6-4ef8-896d-acb09e988e04 bff90d6d59b5b56fcd61dccc369db402 { 'aliquot_tag': 'ALQ_492f916a', 'gdc_sample_type': 'Primary Tumor' } C3N-00753.WGS.N C3N-00753 UCEC WGS blood_normal CPT0130880002 CPT0130880002.WholeGenome.RP-1303.bam 53554795096 BAM aligned CPTAC3 653efd27-f37d-4770-82d9-e32487eaccb6 920036b0de0150f61aa1350e2fb8e071 { 'aliquot_tag': 'ALQ_b31ee4ed', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00753.WGS.N.hg38 C3N-00753 UCEC WGS blood_normal CPT0130880002 6048ef28-8763-4680-8859-98aa1fa77e6d_wgs_gdc_realn.bam 78976989829 BAM harmonized CPTAC3 5da22ef3-4ad9-4f2e-95c9-39579c1314e5 e0974def125fc1f3c57ec036d5fbba92 { 'aliquot_tag': 'ALQ_b31ee4ed', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00753.WGS.T C3N-00753 UCEC WGS tumor CPT0129640006 CPT0129640006.WholeGenome.RP-1303.bam 53082823138 BAM aligned CPTAC3 60100289-0fa1-41bc-ad67-03261dadc4e5 c7b13a585ec7e423646d98479e30edfc { 'aliquot_tag': 'ALQ_12bbe9c8', 'gdc_sample_type': 'Primary Tumor' } @@ -22593,13 +24441,16 @@ C3N-00755.MethArray.Green.T C3N-00755 UCEC Methylation Array tumor CPT0129520007 C3N-00755.MethArray.Red.T C3N-00755 UCEC Methylation Array tumor CPT0129520007 203219670180_R08C01_Red.idat 13676241 IDAT Red NA CPTAC3 8f12137a-9c0c-4cc3-bf37-23851c93e4c8 88d5686eb712858268662ca3ad7a131e { 'aliquot_tag': 'ALQ_6c685e50', 'gdc_sample_type': 'Primary Tumor' } C3N-00755.miRNA-Seq.T C3N-00755 UCEC miRNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0176_AHYGLVBBXX_CTATAC_S39_L005_R1_001.unaln.bam 257132706 BAM unaligned CPTAC3 8c7256e1-6629-4353-932d-5d97e8cc10ca e1ece2b9460c99f3657f93db04a272d4 { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor' } C3N-00755.miRNA-Seq.T.hg38 C3N-00755 UCEC miRNA-Seq tumor CPT0129520010 d3d92a93-517e-4aca-8b01-ee62438e1cda_mirnaseq_gdc_realn.bam 279480046 BAM harmonized CPTAC3 90319517-f376-47a4-9c8d-c7eee89d8193 8dfd0ef4918c757d480824f98db5c03d { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00755.RNA-Seq.chimeric.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 b62c19e9-8122-415f-ac9f-f020e172922e.rna_seq.chimeric.gdc_realn.bam 36095442 BAM chimeric harmonized CPTAC3 e55acdd1-5c90-4944-935b-2c2d6903221a 2482e6200bde6fc7b83cfef724170709 { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00755.RNA-Seq.genomic.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 b62c19e9-8122-415f-ac9f-f020e172922e.rna_seq.genomic.gdc_realn.bam 9896988471 BAM genomic harmonized CPTAC3 3c59adfb-123e-4cd4-8fa7-e9c623ef1586 e6fed1fcd9ea8b3167ea037b2131290f { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00755.RNA-Seq.R1_L005.T C3N-00755 UCEC RNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0177_BH32KTBBXY_ATGTCA_S17_L005_R1_001.fastq.gz 4307243615 FASTQ R1_L005 unaligned CPTAC3 0066fe67-28d9-425d-aaca-25e07d3c7a1f d4edf5c61d27ab092cf2057b790203ff { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00755.RNA-Seq.R1_.T C3N-00755 UCEC RNA-Seq tumor CPT0129560001 20210714_P1_E6_WB7988_plate1_S54_R1_001.fastq.gz 6861879550 FASTQ R1_ unaligned CPTAC3 5dd45ab8-77fa-4639-bb2a-920b137fdada 30ac77da218859c433da37f6145aaad7 { 'aliquot_tag': 'ALQ_708b5da5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00755.RNA-Seq.R2_L005.T C3N-00755 UCEC RNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0177_BH32KTBBXY_ATGTCA_S17_L005_R2_001.fastq.gz 4444988806 FASTQ R2_L005 unaligned CPTAC3 d71ae3c9-74e9-4b53-ae49-72b0ebdc847e cbc94c8c581684695c4d996913740998 { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00755.RNA-Seq.R2_.T C3N-00755 UCEC RNA-Seq tumor CPT0129560001 20210714_P1_E6_WB7988_plate1_S54_R2_001.fastq.gz 7165484062 FASTQ R2_ unaligned CPTAC3 2f81b1d0-c714-4344-a61b-bf544ff2f37f aca96c504b3e3eca7b56443840e3af66 { 'aliquot_tag': 'ALQ_708b5da5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00755.RNA-Seq.transcriptome.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 b62c19e9-8122-415f-ac9f-f020e172922e.rna_seq.transcriptome.gdc_realn.bam 8648024929 BAM transcriptome harmonized CPTAC3 4f95f669-2d72-427a-b29b-0e7419c42110 38f66fb00601063ac7da3d073b64e18a { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00755.RNA-Seq.chimeric.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 9c76918c-9a90-4435-bf2c-ffb629b6bb56.rna_seq.chimeric.gdc_realn.bam 36093888 BAM chimeric harmonized CPTAC3 d41a8e62-4b4c-459a-b16c-3fcb9030234f 303a634b87ddc6cc80c67b92574403a0 { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00755.RNA-Seq.chimeric.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129560001 8e86e63b-bdc1-4299-9319-d11d183f1ffc.rna_seq.chimeric.gdc_realn.bam 182241164 BAM chimeric harmonized CPTAC3 d197ff5a-1b83-4086-89b5-293fcdb6fffa 5f0f20ca277e207a359177307f6526c8 { 'aliquot_tag': 'ALQ_708b5da5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00755.RNA-Seq.genomic.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 9c76918c-9a90-4435-bf2c-ffb629b6bb56.rna_seq.genomic.gdc_realn.bam 9897478317 BAM genomic harmonized CPTAC3 eab81ffc-e6b2-44ca-aa8e-9722fa58465d 99ba4a00429c528963bb6f708b99ff8a { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00755.RNA-Seq.genomic.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129560001 8e86e63b-bdc1-4299-9319-d11d183f1ffc.rna_seq.genomic.gdc_realn.bam 10748714942 BAM genomic harmonized CPTAC3 66a24825-e4bc-45ac-b68d-033ef06675a9 aede56ff2136be8c91317389bfdbba61 { 'aliquot_tag': 'ALQ_708b5da5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00755.RNA-Seq.R1_L005.T C3N-00755 UCEC RNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0177_BH32KTBBXY_ATGTCA_S17_L005_R1_001.fastq.gz 4307243615 FASTQ R1_L005 unaligned CPTAC3 0066fe67-28d9-425d-aaca-25e07d3c7a1f d4edf5c61d27ab092cf2057b790203ff { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00755.RNA-Seq.R2_L005.T C3N-00755 UCEC RNA-Seq tumor CPT0129520010 190108_UNC31-K00269_0177_BH32KTBBXY_ATGTCA_S17_L005_R2_001.fastq.gz 4444988806 FASTQ R2_L005 unaligned CPTAC3 d71ae3c9-74e9-4b53-ae49-72b0ebdc847e cbc94c8c581684695c4d996913740998 { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00755.RNA-Seq.T C3N-00755 UCEC RNA-Seq tumor CPT0129560001 20210714_P1_E6_WB7988_plate1_S54_R1_001.fastq.gz 6861879550 FASTQ unaligned CPTAC3 5dd45ab8-77fa-4639-bb2a-920b137fdada 30ac77da218859c433da37f6145aaad7 +C3N-00755.RNA-Seq.T C3N-00755 UCEC RNA-Seq tumor CPT0129560001 20210714_P1_E6_WB7988_plate1_S54_R2_001.fastq.gz 7165484062 FASTQ unaligned CPTAC3 2f81b1d0-c714-4344-a61b-bf544ff2f37f aca96c504b3e3eca7b56443840e3af66 +C3N-00755.RNA-Seq.transcriptome.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129520010 9c76918c-9a90-4435-bf2c-ffb629b6bb56.rna_seq.transcriptome.gdc_realn.bam 9849538258 BAM transcriptome harmonized CPTAC3 d74356b6-3e27-4065-8892-9eacf6b521e2 73085c85eb7f6017f1fbee0ff24ea29b { 'aliquot_tag': 'ALQ_eb17fab2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00755.RNA-Seq.transcriptome.T.hg38 C3N-00755 UCEC RNA-Seq tumor CPT0129560001 8e86e63b-bdc1-4299-9319-d11d183f1ffc.rna_seq.transcriptome.gdc_realn.bam 6803385711 BAM transcriptome harmonized CPTAC3 119f76dc-26a3-4991-8fb9-78d006de8b47 2cbf5491bd1bd3b23d5a13f8e1e34c91 { 'aliquot_tag': 'ALQ_708b5da5', 'gdc_sample_type': 'Primary Tumor' } C3N-00755.WGS.N C3N-00755 UCEC WGS blood_normal CPT0130860002 CPT0130860002.WholeGenome.RP-1303.bam 54288114855 BAM aligned CPTAC3 b2856f03-4bd6-42d4-aaca-55b88baf25be d5bcf998c693cbb6a9336f96280cccdd { 'aliquot_tag': 'ALQ_c2e5a8c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00755.WGS.N.hg38 C3N-00755 UCEC WGS blood_normal CPT0130860002 7addbadb-d490-4771-9b90-d1f15f80eae2_wgs_gdc_realn.bam 78513921229 BAM harmonized CPTAC3 23ce58b2-6712-4212-abd4-5227785a62db 9e4b00fb0e28a93e6cd6ddb46624bbda { 'aliquot_tag': 'ALQ_c2e5a8c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00755.WGS.T C3N-00755 UCEC WGS tumor CPT0129520007 CPT0129520007.WholeGenome.RP-1303.bam 61723557374 BAM aligned CPTAC3 9b92c9ac-b1ab-4d34-841e-0290b3cfd4b0 1c18ef8fe77179698a239aea578ae695 { 'aliquot_tag': 'ALQ_6c685e50', 'gdc_sample_type': 'Primary Tumor' } @@ -22613,12 +24464,15 @@ C3N-00822.MethArray.Red.T C3N-00822 HNSCC Methylation Array tumor CPT0087820009 C3N-00822.miRNA-Seq.T C3N-00822 HNSCC miRNA-Seq tumor CPT0087820006 190813_UNC32-K00270_0196_AH5MCWBBXY_CTATAC_S25_L002_R1_001.unaln.bam 286398033 BAM unaligned CPTAC3 f286101a-047d-4b3c-a433-2ee2f65ca210 816ddb41a8ad8366ab81011f64695c27 { 'aliquot_tag': 'ALQ_71750ece', 'gdc_sample_type': 'Primary Tumor' } C3N-00822.miRNA-Seq.T.hg38 C3N-00822 HNSCC miRNA-Seq tumor CPT0087820006 a5bf2760-831c-4f49-9e7e-1df33e2eacc7_mirnaseq_gdc_realn.bam 324377707 BAM harmonized CPTAC3 df88b4c6-8c88-470b-8594-45383d9aa73e e2e852760c21b5eef15dde75bbf229ad { 'aliquot_tag': 'ALQ_71750ece', 'gdc_sample_type': 'Primary Tumor' } C3N-00822.RNA-Seq.chimeric.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 c6a7ffcc-71b4-46d1-b1c7-965b8cdec4ea.rna_seq.chimeric.gdc_realn.bam 43909671 BAM chimeric harmonized CPTAC3 d872684d-ae3b-48f3-ac81-71f923f9a432 32d45b793170254c7a2f5acbac652b6d { 'aliquot_tag': 'ALQ_71750ece', 'gdc_sample_type': 'Primary Tumor' } -C3N-00822.RNA-Seq.genomic.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 c6a7ffcc-71b4-46d1-b1c7-965b8cdec4ea.rna_seq.genomic.gdc_realn.bam 11032450446 BAM genomic harmonized CPTAC3 a4cdeafb-230f-4d6c-8f5f-49a47724f422 0c80ab46d98fbca58cf1f3e66f24aa33 { 'aliquot_tag': 'ALQ_71750ece', 'gdc_sample_type': 'Primary Tumor' } -C3N-00822.RNA-Seq.R1_L008.T C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 171129_UNC32-K00270_0066_AHM25VBBXX_GAGTGG_S21_L008_R1_001.fastq.gz 4201093604 FASTQ R1_L008 unaligned CPTAC3 0301a383-da2d-49b6-93cd-647d466b371f f60a823d5cff06ab6f77f722c581a85e { 'aliquot_tag': 'ALQ_71750ece', 'gdc_sample_type': 'Primary Tumor' } -C3N-00822.RNA-Seq.R1_.T C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 20210729_P3_C12_WB7988-Plate3_S36_R1_001.fastq.gz 8018982990 FASTQ R1_ unaligned CPTAC3 a6b52759-1ad2-4131-a5cc-e8a81588e376 d726d6a4f0ecc18cb6ab513ea294fc99 { 'aliquot_tag': 'ALQ_fc37568d', 'gdc_sample_type': 'Primary Tumor' } -C3N-00822.RNA-Seq.R2_L008.T C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 171129_UNC32-K00270_0066_AHM25VBBXX_GAGTGG_S21_L008_R2_001.fastq.gz 4662070979 FASTQ R2_L008 unaligned CPTAC3 81e003f3-cf09-489b-87eb-323cf1737646 928337966b9650410f43fa6b9fd28cdf { 'aliquot_tag': 'ALQ_71750ece', 'gdc_sample_type': 'Primary Tumor' } -C3N-00822.RNA-Seq.R2_.T C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 20210729_P3_C12_WB7988-Plate3_S36_R2_001.fastq.gz 8383519746 FASTQ R2_ unaligned CPTAC3 e5b128f4-32b8-4584-9cb3-b29ca487edd8 65296debc08402fa64c0edf1ab3596fa { 'aliquot_tag': 'ALQ_fc37568d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00822.RNA-Seq.chimeric.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 7efa006b-fa95-4982-9567-35a270df0c6a.rna_seq.chimeric.gdc_realn.bam 230735291 BAM chimeric harmonized CPTAC3 9ba92479-8056-46d4-8de6-4dc7faee604a 91f8cd4dc577d2e09ac2f020c5a46d88 { 'aliquot_tag': 'ALQ_fc37568d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00822.RNA-Seq.genomic.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 c6a7ffcc-71b4-46d1-b1c7-965b8cdec4ea.rna_seq.genomic.gdc_realn.bam 11032450446 BAM genomic harmonized CPTAC3 4c994f0a-6c6e-4452-8957-5d512503860f 0c80ab46d98fbca58cf1f3e66f24aa33 { 'aliquot_tag': 'ALQ_71750ece', 'gdc_sample_type': 'Primary Tumor' } +C3N-00822.RNA-Seq.genomic.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 7efa006b-fa95-4982-9567-35a270df0c6a.rna_seq.genomic.gdc_realn.bam 13914260519 BAM genomic harmonized CPTAC3 4f8e8e0f-7e70-40ab-996b-85f8f005e127 9a1e3a893d3dc192b68968052a153446 { 'aliquot_tag': 'ALQ_fc37568d', 'gdc_sample_type': 'Primary Tumor' } +C3N-00822.RNA-Seq.R1_L008.T C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 171129_UNC32-K00270_0066_AHM25VBBXX_GAGTGG_S21_L008_R1_001.fastq.gz 4201093604 FASTQ R1_L008 unaligned CPTAC3 0301a383-da2d-49b6-93cd-647d466b371f f60a823d5cff06ab6f77f722c581a85e { 'aliquot_tag': 'ALQ_71750ece', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00822.RNA-Seq.R2_L008.T C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 171129_UNC32-K00270_0066_AHM25VBBXX_GAGTGG_S21_L008_R2_001.fastq.gz 4662070979 FASTQ R2_L008 unaligned CPTAC3 81e003f3-cf09-489b-87eb-323cf1737646 928337966b9650410f43fa6b9fd28cdf { 'aliquot_tag': 'ALQ_71750ece', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00822.RNA-Seq.T C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 20210729_P3_C12_WB7988-Plate3_S36_R1_001.fastq.gz 8018982990 FASTQ unaligned CPTAC3 a6b52759-1ad2-4131-a5cc-e8a81588e376 d726d6a4f0ecc18cb6ab513ea294fc99 +C3N-00822.RNA-Seq.T C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 20210729_P3_C12_WB7988-Plate3_S36_R2_001.fastq.gz 8383519746 FASTQ unaligned CPTAC3 e5b128f4-32b8-4584-9cb3-b29ca487edd8 65296debc08402fa64c0edf1ab3596fa C3N-00822.RNA-Seq.transcriptome.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0087820006 c6a7ffcc-71b4-46d1-b1c7-965b8cdec4ea.rna_seq.transcriptome.gdc_realn.bam 10382448303 BAM transcriptome harmonized CPTAC3 958a3976-5753-4dc1-8ec9-8d4605407e8b 298519fa596131f204c516b91118d344 { 'aliquot_tag': 'ALQ_71750ece', 'gdc_sample_type': 'Primary Tumor' } +C3N-00822.RNA-Seq.transcriptome.T.hg38 C3N-00822 HNSCC RNA-Seq tumor CPT0314390011 7efa006b-fa95-4982-9567-35a270df0c6a.rna_seq.transcriptome.gdc_realn.bam 7108562522 BAM transcriptome harmonized CPTAC3 75a736da-7064-4381-8c45-2e7a098ff63c 635ff472fe07bf53b1dd3e65bc5d1bdd { 'aliquot_tag': 'ALQ_fc37568d', 'gdc_sample_type': 'Primary Tumor' } C3N-00822.WGS.N C3N-00822 HNSCC WGS blood_normal CPT0087880002 CPT0087880002.WholeGenome.RP-1303.bam 63513539724 BAM aligned CPTAC3 19230fb5-9bde-4cc8-9992-db89e4fe6c53 187bcd20ee4b1c217efb0d86ad3d1374 { 'aliquot_tag': 'ALQ_3ca8d276', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00822.WGS.N.hg38 C3N-00822 HNSCC WGS blood_normal CPT0087880002 e2aaffe0-cd97-4b93-8e61-de5f324f901c_wgs_gdc_realn.bam 93023555279 BAM harmonized CPTAC3 07016237-407b-47ec-bac2-8c0b47ec2217 b058e1f94fe2db824cf62af2776b4c52 { 'aliquot_tag': 'ALQ_3ca8d276', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00822.WGS.T C3N-00822 HNSCC WGS tumor CPT0087820009 CPT0087820009.WholeGenome.RP-1303.bam 61090064114 BAM aligned CPTAC3 c0f6d127-d65b-4806-9f63-498b78e37aed 40c9b31f7e90a51d13c938ce427e50eb { 'aliquot_tag': 'ALQ_e1ca135f', 'gdc_sample_type': 'Primary Tumor' } @@ -22632,12 +24486,15 @@ C3N-00825.MethArray.Red.T C3N-00825 HNSCC Methylation Array tumor CPT0094280010 C3N-00825.miRNA-Seq.T C3N-00825 HNSCC miRNA-Seq tumor CPT0094280007 180828_UNC32-K00270_0112_AHWTLNBBXX_CAACTA_S35_L007_R1_001.unaln.bam 229966370 BAM unaligned CPTAC3 1687253f-8a1a-4041-9382-b6e7f17ccf3d 5458a6f559a665b47d93a1ea50bc36b8 { 'aliquot_tag': 'ALQ_101b1f9c', 'gdc_sample_type': 'Primary Tumor' } C3N-00825.miRNA-Seq.T.hg38 C3N-00825 HNSCC miRNA-Seq tumor CPT0094280007 73ad72e3-88fa-49f4-86ed-ce0823b7c590_mirnaseq_gdc_realn.bam 252902109 BAM harmonized CPTAC3 7a536e33-a545-454c-9d31-5215805377c5 917b9be818504fde29cf001dd0851bfa { 'aliquot_tag': 'ALQ_101b1f9c', 'gdc_sample_type': 'Primary Tumor' } C3N-00825.RNA-Seq.chimeric.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 489d7297-5125-49f0-a251-c189fbf03b1e.rna_seq.chimeric.gdc_realn.bam 41378396 BAM chimeric harmonized CPTAC3 4e103405-782c-43a1-8f49-c1c2486631d1 7ac352554bcebd6191513225e51d7acd { 'aliquot_tag': 'ALQ_101b1f9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00825.RNA-Seq.genomic.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 489d7297-5125-49f0-a251-c189fbf03b1e.rna_seq.genomic.gdc_realn.bam 9322692093 BAM genomic harmonized CPTAC3 7840c74e-ca12-4fb0-baca-342616e7cf1d 6a69c30205cdec0c073ec46a77dc4b9e { 'aliquot_tag': 'ALQ_101b1f9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00825.RNA-Seq.R1_L003.T C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L003_R1_001.fastq.gz 4033477916 FASTQ R1_L003 unaligned CPTAC3 fec68aaa-b9e0-4959-bc51-76f6ecdcc4b7 13b129c700a02ada4d91e35c8f0f0d22 { 'aliquot_tag': 'ALQ_101b1f9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00825.RNA-Seq.R1_.T C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 20210723_P2_D6_WB7988-plate2_S42_R1_001.fastq.gz 4291323722 FASTQ R1_ unaligned CPTAC3 a20072a8-fd7a-4ba4-b9f3-82048e73dc46 205b1fd8644686d6fed9663f146d68e6 { 'aliquot_tag': 'ALQ_96e25724', 'gdc_sample_type': 'Primary Tumor' } -C3N-00825.RNA-Seq.R2_L003.T C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L003_R2_001.fastq.gz 4409765570 FASTQ R2_L003 unaligned CPTAC3 00992899-0948-473e-99dc-8ef0730087a6 78446d6458206dbf9c28ca6d8fadc7b7 { 'aliquot_tag': 'ALQ_101b1f9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-00825.RNA-Seq.R2_.T C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 20210723_P2_D6_WB7988-plate2_S42_R2_001.fastq.gz 4429670599 FASTQ R2_ unaligned CPTAC3 4edef0a6-fd5a-48f3-92ea-a74fd2acae33 3b6e1f32967666ea9e5732fe814b7ec1 { 'aliquot_tag': 'ALQ_96e25724', 'gdc_sample_type': 'Primary Tumor' } +C3N-00825.RNA-Seq.chimeric.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 0ff0e56a-a835-4241-b663-0272eac3c552.rna_seq.chimeric.gdc_realn.bam 145958620 BAM chimeric harmonized CPTAC3 d52ba916-373a-4ba5-9aaa-b6ebf1320dee 94bcb8604cb016d73b3af600c8654c46 { 'aliquot_tag': 'ALQ_96e25724', 'gdc_sample_type': 'Primary Tumor' } +C3N-00825.RNA-Seq.genomic.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 489d7297-5125-49f0-a251-c189fbf03b1e.rna_seq.genomic.gdc_realn.bam 9322692093 BAM genomic harmonized CPTAC3 46470433-1632-4d3d-b477-a4297f600127 6a69c30205cdec0c073ec46a77dc4b9e { 'aliquot_tag': 'ALQ_101b1f9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00825.RNA-Seq.genomic.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 0ff0e56a-a835-4241-b663-0272eac3c552.rna_seq.genomic.gdc_realn.bam 7523828078 BAM genomic harmonized CPTAC3 dd024423-f0ca-4cd0-b543-68c530f1f15e d900f7f84c53ddf69d8903d383ea2c0c { 'aliquot_tag': 'ALQ_96e25724', 'gdc_sample_type': 'Primary Tumor' } +C3N-00825.RNA-Seq.R1_L003.T C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L003_R1_001.fastq.gz 4033477916 FASTQ R1_L003 unaligned CPTAC3 fec68aaa-b9e0-4959-bc51-76f6ecdcc4b7 13b129c700a02ada4d91e35c8f0f0d22 { 'aliquot_tag': 'ALQ_101b1f9c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00825.RNA-Seq.R2_L003.T C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L003_R2_001.fastq.gz 4409765570 FASTQ R2_L003 unaligned CPTAC3 00992899-0948-473e-99dc-8ef0730087a6 78446d6458206dbf9c28ca6d8fadc7b7 { 'aliquot_tag': 'ALQ_101b1f9c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00825.RNA-Seq.T C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 20210723_P2_D6_WB7988-plate2_S42_R1_001.fastq.gz 4291323722 FASTQ unaligned CPTAC3 a20072a8-fd7a-4ba4-b9f3-82048e73dc46 205b1fd8644686d6fed9663f146d68e6 +C3N-00825.RNA-Seq.T C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 20210723_P2_D6_WB7988-plate2_S42_R2_001.fastq.gz 4429670599 FASTQ unaligned CPTAC3 4edef0a6-fd5a-48f3-92ea-a74fd2acae33 3b6e1f32967666ea9e5732fe814b7ec1 C3N-00825.RNA-Seq.transcriptome.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0094280007 489d7297-5125-49f0-a251-c189fbf03b1e.rna_seq.transcriptome.gdc_realn.bam 11378185713 BAM transcriptome harmonized CPTAC3 57b3840e-165c-417e-b604-c1e1d7280026 1ee258fd39339ade7bb7058a552ee19a { 'aliquot_tag': 'ALQ_101b1f9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-00825.RNA-Seq.transcriptome.T.hg38 C3N-00825 HNSCC RNA-Seq tumor CPT0314420011 0ff0e56a-a835-4241-b663-0272eac3c552.rna_seq.transcriptome.gdc_realn.bam 5807482319 BAM transcriptome harmonized CPTAC3 cdd25743-4ec1-431c-bb48-e8018903f6d8 eaea6121d9b2dde77f88950fb67ea33d { 'aliquot_tag': 'ALQ_96e25724', 'gdc_sample_type': 'Primary Tumor' } C3N-00825.WGS.N C3N-00825 HNSCC WGS blood_normal CPT0094340002 CPT0094340002.WholeGenome.RP-1303.bam 68523444995 BAM aligned CPTAC3 315633b1-e3ed-440b-8af2-183edc15fe43 fe90cfaefec664a3ef4f4cce4cc7852c { 'aliquot_tag': 'ALQ_6eddd5b7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00825.WGS.N.hg38 C3N-00825 HNSCC WGS blood_normal CPT0094340002 052c318a-0d9e-4bea-97b1-7f8bab5866f7_wgs_gdc_realn.bam 101073711752 BAM harmonized CPTAC3 5e0a1c4c-c474-4682-8366-28c24fa656fc 2fc2fb64dd48d4ae0001e355caecc902 { 'aliquot_tag': 'ALQ_6eddd5b7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00825.WGS.T C3N-00825 HNSCC WGS tumor CPT0094280010 CPT0094280010.WholeGenome.RP-1303.bam 65472001467 BAM aligned CPTAC3 c6ccb016-32d3-485b-9129-280b4604b42e 275d640beeff25445618fb90d8fae42b { 'aliquot_tag': 'ALQ_9764bb7e', 'gdc_sample_type': 'Primary Tumor' } @@ -22651,9 +24508,9 @@ C3N-00828.MethArray.Red.T C3N-00828 HNSCC Methylation Array tumor CPT0013130009 C3N-00828.miRNA-Seq.T C3N-00828 HNSCC miRNA-Seq tumor CPT0013130006 180924_UNC31-K00269_0154_AHWTMLBBXX_CACGAT_S40_L002_R1_001.unaln.bam 176350387 BAM unaligned CPTAC3 0cc2e7bb-5623-4f4a-b26e-8502e3ccb209 5363cf42241d8c5651ef304e83da1214 { 'aliquot_tag': 'ALQ_801a498e', 'gdc_sample_type': 'Primary Tumor' } C3N-00828.miRNA-Seq.T.hg38 C3N-00828 HNSCC miRNA-Seq tumor CPT0013130006 a8395f44-31fd-4eb5-a1e1-7e03d39e8804_mirnaseq_gdc_realn.bam 194356167 BAM harmonized CPTAC3 b25bbb91-e985-4354-9f0a-eb9de5c064b7 6c3ec6fc1d6a8b9e29df748f5a5b43d2 { 'aliquot_tag': 'ALQ_801a498e', 'gdc_sample_type': 'Primary Tumor' } C3N-00828.RNA-Seq.chimeric.T.hg38 C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 ea958d87-580b-41bd-b884-4b929f4ba279.rna_seq.chimeric.gdc_realn.bam 60224941 BAM chimeric harmonized CPTAC3 4b79882a-b828-4733-9baf-72b63dfa5061 617e394c3f0b3e1d6040017b6559e4b8 { 'aliquot_tag': 'ALQ_801a498e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00828.RNA-Seq.genomic.T.hg38 C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 ea958d87-580b-41bd-b884-4b929f4ba279.rna_seq.genomic.gdc_realn.bam 8354386266 BAM genomic harmonized CPTAC3 c4a505b3-53e5-45d4-8b57-d1a2c06ea716 584369e98418e2ddded00078a28749f5 { 'aliquot_tag': 'ALQ_801a498e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00828.RNA-Seq.R1_L006.T C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L006_R1_001.fastq.gz 3541810555 FASTQ R1_L006 unaligned CPTAC3 4995c0b0-d037-4ebe-b8fb-9a70591542be 6ea3fffc4c381bb50e3b928b2463681d { 'aliquot_tag': 'ALQ_801a498e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00828.RNA-Seq.R2_L006.T C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L006_R2_001.fastq.gz 3860601150 FASTQ R2_L006 unaligned CPTAC3 624fcdb8-e2ba-48b5-91f6-7c2c2447fc0b 2515f3f2c321a9c4d9ec7a509d45a428 { 'aliquot_tag': 'ALQ_801a498e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00828.RNA-Seq.genomic.T.hg38 C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 ea958d87-580b-41bd-b884-4b929f4ba279.rna_seq.genomic.gdc_realn.bam 8354386266 BAM genomic harmonized CPTAC3 e3e6e08f-4154-41be-a0c1-8d12bccb72b0 584369e98418e2ddded00078a28749f5 { 'aliquot_tag': 'ALQ_801a498e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00828.RNA-Seq.R1_L006.T C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L006_R1_001.fastq.gz 3541810555 FASTQ R1_L006 unaligned CPTAC3 4995c0b0-d037-4ebe-b8fb-9a70591542be 6ea3fffc4c381bb50e3b928b2463681d { 'aliquot_tag': 'ALQ_801a498e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00828.RNA-Seq.R2_L006.T C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L006_R2_001.fastq.gz 3860601150 FASTQ R2_L006 unaligned CPTAC3 624fcdb8-e2ba-48b5-91f6-7c2c2447fc0b 2515f3f2c321a9c4d9ec7a509d45a428 { 'aliquot_tag': 'ALQ_801a498e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-00828.RNA-Seq.transcriptome.T.hg38 C3N-00828 HNSCC RNA-Seq tumor CPT0013130006 ea958d87-580b-41bd-b884-4b929f4ba279.rna_seq.transcriptome.gdc_realn.bam 9169814363 BAM transcriptome harmonized CPTAC3 ecdfa919-dded-4699-a2ef-f63b7b1f89bf bab1eb3a7fe443ab14ee00818d2c5dad { 'aliquot_tag': 'ALQ_801a498e', 'gdc_sample_type': 'Primary Tumor' } C3N-00828.WGS.N C3N-00828 HNSCC WGS blood_normal CPT0013200002 CPT0013200002.WholeGenome.RP-1303.bam 60644745059 BAM aligned CPTAC3 5e758814-7ab3-421d-b9b7-ca30393d1a81 86503cf2194c54adc8ea0f61ecca3915 { 'aliquot_tag': 'ALQ_464385e9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00828.WGS.N.hg38 C3N-00828 HNSCC WGS blood_normal CPT0013200002 07d2af8c-bf1c-41a4-927d-502e45817b7f_gdc_realn.bam 89624454199 BAM harmonized CPTAC3 425396fe-ddf8-4150-a043-681f8f3c6ea2 fe98551acf1b274d230ba2f4d7557307 { 'aliquot_tag': 'ALQ_464385e9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22668,9 +24525,9 @@ C3N-00829.MethArray.Red.T C3N-00829 HNSCC Methylation Array tumor CPT0013210010 C3N-00829.miRNA-Seq.T C3N-00829 HNSCC miRNA-Seq tumor CPT0013210007 180724_UNC32-K00270_0106_BHWK3MBBXX_TGACCA_S28_L008_R1_001.unaln.bam 283732618 BAM unaligned CPTAC3 d3777ec2-723b-4dd9-81b2-d97c15da0ee9 b60c84c94e3c2fc08e70385c8be08e73 { 'aliquot_tag': 'ALQ_b4958d6', 'gdc_sample_type': 'Primary Tumor' } C3N-00829.miRNA-Seq.T.hg38 C3N-00829 HNSCC miRNA-Seq tumor CPT0013210007 86cdb3cb-d894-4c5e-8736-67fb5d92a0e0_mirnaseq_gdc_realn.bam 309384381 BAM harmonized CPTAC3 1f8c8d67-6062-420e-b1df-7ca53e3a18b6 255786c828a422a2368e7575d2fc230d { 'aliquot_tag': 'ALQ_b4958d6', 'gdc_sample_type': 'Primary Tumor' } C3N-00829.RNA-Seq.chimeric.T.hg38 C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 a3b6638d-5487-4956-b262-d1c296c6bd5f.rna_seq.chimeric.gdc_realn.bam 66790963 BAM chimeric harmonized CPTAC3 0d643419-1bf6-41d7-a947-66ebba295235 321fd48ebc8aaa4449d76e6eb42bd921 { 'aliquot_tag': 'ALQ_b4958d6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00829.RNA-Seq.genomic.T.hg38 C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 a3b6638d-5487-4956-b262-d1c296c6bd5f.rna_seq.genomic.gdc_realn.bam 8975962235 BAM genomic harmonized CPTAC3 8b2907be-032d-4aae-b057-cff89cbfa709 a5b8e05d122a382b819be6558edb9633 { 'aliquot_tag': 'ALQ_b4958d6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00829.RNA-Seq.R1_L005.T C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 171116_UNC31-K00269_0093_BHMFKJBBXX_TGACCA_S19_L005_R1_001.fastq.gz 4069137121 FASTQ R1_L005 unaligned CPTAC3 99d99cc0-1b40-42c5-9cc3-020797d18fbd 444776af8e3837bb14c0668130a73573 { 'aliquot_tag': 'ALQ_b4958d6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00829.RNA-Seq.R2_L005.T C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 171116_UNC31-K00269_0093_BHMFKJBBXX_TGACCA_S19_L005_R2_001.fastq.gz 4358176678 FASTQ R2_L005 unaligned CPTAC3 a730c04d-450d-4afd-bde8-bd21af872055 3a2532894b224554db053c911f9b6d1d { 'aliquot_tag': 'ALQ_b4958d6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00829.RNA-Seq.genomic.T.hg38 C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 a3b6638d-5487-4956-b262-d1c296c6bd5f.rna_seq.genomic.gdc_realn.bam 8975962235 BAM genomic harmonized CPTAC3 ce32122e-68cc-4e75-84e4-01bebb055de0 a5b8e05d122a382b819be6558edb9633 { 'aliquot_tag': 'ALQ_b4958d6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00829.RNA-Seq.R1_L005.T C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 171116_UNC31-K00269_0093_BHMFKJBBXX_TGACCA_S19_L005_R1_001.fastq.gz 4069137121 FASTQ R1_L005 unaligned CPTAC3 99d99cc0-1b40-42c5-9cc3-020797d18fbd 444776af8e3837bb14c0668130a73573 { 'aliquot_tag': 'ALQ_b4958d6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00829.RNA-Seq.R2_L005.T C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 171116_UNC31-K00269_0093_BHMFKJBBXX_TGACCA_S19_L005_R2_001.fastq.gz 4358176678 FASTQ R2_L005 unaligned CPTAC3 a730c04d-450d-4afd-bde8-bd21af872055 3a2532894b224554db053c911f9b6d1d { 'aliquot_tag': 'ALQ_b4958d6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00829.RNA-Seq.transcriptome.T.hg38 C3N-00829 HNSCC RNA-Seq tumor CPT0013210007 a3b6638d-5487-4956-b262-d1c296c6bd5f.rna_seq.transcriptome.gdc_realn.bam 10561486905 BAM transcriptome harmonized CPTAC3 6e775b7a-a660-4ce4-a6cb-b549b73a482c 2131427e28de9c992ca4b2494f5a3b04 { 'aliquot_tag': 'ALQ_b4958d6', 'gdc_sample_type': 'Primary Tumor' } C3N-00829.WGS.N C3N-00829 HNSCC WGS blood_normal CPT0013310002 CPT0013310002.WholeGenome.RP-1303.bam 54397732507 BAM aligned CPTAC3 6f7c88cf-da1e-4332-b875-3b34ac32df2e 62f51b3182a021150d132c1b709ea93a { 'aliquot_tag': 'ALQ_b07f7ffc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00829.WGS.N.hg38 C3N-00829 HNSCC WGS blood_normal CPT0013310002 c3576999-35ec-48bd-8bbb-e03d03660efa_wgs_gdc_realn.bam 80682174718 BAM harmonized CPTAC3 2ef8a5c4-2c2e-4908-ab76-bd1c1baa1010 6efec95009daf5c65e45875d91e170ee { 'aliquot_tag': 'ALQ_b07f7ffc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22691,11 +24548,11 @@ C3N-00831.miRNA-Seq.T.hg38 C3N-00831 CCRCC miRNA-Seq tumor CPT0089020006 caf4647 C3N-00831.RNA-Seq.chimeric.A.hg38 C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 0e8762a5-1774-4068-8014-1b7017cc5f24.rna_seq.chimeric.gdc_realn.bam 35876312 BAM chimeric harmonized CPTAC3 7463e6f0-221d-426b-97d5-6163510bace5 85bd7f5748ac069e1cc9acad4ae18467 { 'aliquot_tag': 'ALQ_4259025e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00831.RNA-Seq.chimeric.T.hg38 C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 11776250-25fe-4fcb-8a52-6a0fe0cce4d8.rna_seq.chimeric.gdc_realn.bam 32928633 BAM chimeric harmonized CPTAC3 aa2a895a-5bfe-4905-8c73-3de44bcd3a86 e526ce117bd22780be5f6285c0c7890e { 'aliquot_tag': 'ALQ_cd19f7fe', 'gdc_sample_type': 'Primary Tumor' } C3N-00831.RNA-Seq.genomic.A.hg38 C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 0e8762a5-1774-4068-8014-1b7017cc5f24.rna_seq.genomic.gdc_realn.bam 6096304171 BAM genomic harmonized CPTAC3 bd38e560-ad28-4c74-8099-a7c3425f0802 e53442c4debe262809031431acdd5c90 { 'aliquot_tag': 'ALQ_4259025e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00831.RNA-Seq.genomic.T.hg38 C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 11776250-25fe-4fcb-8a52-6a0fe0cce4d8.rna_seq.genomic.gdc_realn.bam 8598876759 BAM genomic harmonized CPTAC3 c7b30d99-345f-4eae-84ad-87b596c8c7c7 de6a828c24af29d9cc9155a468e7bbaf { 'aliquot_tag': 'ALQ_cd19f7fe', 'gdc_sample_type': 'Primary Tumor' } -C3N-00831.RNA-Seq.R1_L004.A C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 171215_UNC32-K00270_0072_AHN3THBBXX_CGTACG_S13_L004_R1_001.fastq.gz 3025483108 FASTQ R1_L004 unaligned CPTAC3 70c6f7d5-8093-4ef4-83e2-c4c159d37302 560c0dd42dd46a3d3bc2cdf3c072d1e5 { 'aliquot_tag': 'ALQ_4259025e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00831.RNA-Seq.R1_L004.T C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATTCCT_S16_L004_R1_001.fastq.gz 4264066138 FASTQ R1_L004 unaligned CPTAC3 75651231-85e8-42cc-a674-bec7fc8fda14 94dfbacbe29ea4b18b050e882ed22cb7 { 'aliquot_tag': 'ALQ_cd19f7fe', 'gdc_sample_type': 'Primary Tumor' } -C3N-00831.RNA-Seq.R2_L004.A C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 171215_UNC32-K00270_0072_AHN3THBBXX_CGTACG_S13_L004_R2_001.fastq.gz 3253754740 FASTQ R2_L004 unaligned CPTAC3 21442031-237f-4ef0-8ca5-9b74b06b603b 51a22852d499e8a235b968d1977a669f { 'aliquot_tag': 'ALQ_4259025e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00831.RNA-Seq.R2_L004.T C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATTCCT_S16_L004_R2_001.fastq.gz 4700279872 FASTQ R2_L004 unaligned CPTAC3 939be026-0a90-4585-8a24-b7c83c09d7fb b2e7ed149c2118943593fe61d9a27dc2 { 'aliquot_tag': 'ALQ_cd19f7fe', 'gdc_sample_type': 'Primary Tumor' } +C3N-00831.RNA-Seq.genomic.T.hg38 C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 11776250-25fe-4fcb-8a52-6a0fe0cce4d8.rna_seq.genomic.gdc_realn.bam 8598876759 BAM genomic harmonized CPTAC3 f25cb6a1-958e-4d57-ac90-38108c092895 de6a828c24af29d9cc9155a468e7bbaf { 'aliquot_tag': 'ALQ_cd19f7fe', 'gdc_sample_type': 'Primary Tumor' } +C3N-00831.RNA-Seq.R1_L004.A C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 171215_UNC32-K00270_0072_AHN3THBBXX_CGTACG_S13_L004_R1_001.fastq.gz 3025483108 FASTQ R1_L004 unaligned CPTAC3 70c6f7d5-8093-4ef4-83e2-c4c159d37302 560c0dd42dd46a3d3bc2cdf3c072d1e5 { 'aliquot_tag': 'ALQ_4259025e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-00831.RNA-Seq.R1_L004.T C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATTCCT_S16_L004_R1_001.fastq.gz 4264066138 FASTQ R1_L004 unaligned CPTAC3 75651231-85e8-42cc-a674-bec7fc8fda14 94dfbacbe29ea4b18b050e882ed22cb7 { 'aliquot_tag': 'ALQ_cd19f7fe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00831.RNA-Seq.R2_L004.A C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 171215_UNC32-K00270_0072_AHN3THBBXX_CGTACG_S13_L004_R2_001.fastq.gz 3253754740 FASTQ R2_L004 unaligned CPTAC3 21442031-237f-4ef0-8ca5-9b74b06b603b 51a22852d499e8a235b968d1977a669f { 'aliquot_tag': 'ALQ_4259025e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-00831.RNA-Seq.R2_L004.T C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 170908_UNC31-K00269_0080_BHLJ52BBXX_ATTCCT_S16_L004_R2_001.fastq.gz 4700279872 FASTQ R2_L004 unaligned CPTAC3 939be026-0a90-4585-8a24-b7c83c09d7fb b2e7ed149c2118943593fe61d9a27dc2 { 'aliquot_tag': 'ALQ_cd19f7fe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-00831.RNA-Seq.transcriptome.A.hg38 C3N-00831 CCRCC RNA-Seq tissue_normal CPT0089040006 0e8762a5-1774-4068-8014-1b7017cc5f24.rna_seq.transcriptome.gdc_realn.bam 8020472844 BAM transcriptome harmonized CPTAC3 07e2d924-bb8c-471a-95af-45124ffece30 13ebcf715a33dafa9e8892a736ef69c1 { 'aliquot_tag': 'ALQ_4259025e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00831.RNA-Seq.transcriptome.T.hg38 C3N-00831 CCRCC RNA-Seq tumor CPT0089020006 11776250-25fe-4fcb-8a52-6a0fe0cce4d8.rna_seq.transcriptome.gdc_realn.bam 12118656226 BAM transcriptome harmonized CPTAC3 4cadf4b8-9de3-43f0-a091-eb7f4aca9282 70bd69c22e66059c4a6dbaa629035f29 { 'aliquot_tag': 'ALQ_cd19f7fe', 'gdc_sample_type': 'Primary Tumor' } C3N-00831.WGS.A C3N-00831 CCRCC WGS tissue_normal CPT0089040009 CPT0089040009.WholeGenome.RP-1303.bam 63266517496 BAM aligned CPTAC3 f2d91634-949a-42b6-8945-f25d8e6e2351 0b76934b1f34031a767a1bd9a9c937bf { 'aliquot_tag': 'ALQ_d2e61fcf', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -22715,9 +24572,9 @@ C3N-00832.MethArray.Red.T C3N-00832 CCRCC Methylation Array tumor CPT0078800009 C3N-00832.miRNA-Seq.T C3N-00832 CCRCC miRNA-Seq tumor CPT0078800006 181012_UNC32-K00270_0124_AH223CBBXY_TATAAT_S17_L008_R1_001.unaln.bam 225468813 BAM unaligned CPTAC3 211ed18f-49c5-4570-9444-528cf78d20cc fcf67e9b08c8312d1c0cf46e8d1edb34 { 'aliquot_tag': 'ALQ_24dd3feb', 'gdc_sample_type': 'Primary Tumor' } C3N-00832.miRNA-Seq.T.hg38 C3N-00832 CCRCC miRNA-Seq tumor CPT0078800006 a8e3f8fb-6dd5-4600-adcd-612f69e9af2b_mirnaseq_gdc_realn.bam 248993644 BAM harmonized CPTAC3 00ae5e98-5d0e-4f3a-a6ce-c182056e32b5 875ad6fbab578cbf4ae4678aff3de299 { 'aliquot_tag': 'ALQ_24dd3feb', 'gdc_sample_type': 'Primary Tumor' } C3N-00832.RNA-Seq.chimeric.T.hg38 C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 b338b489-1752-49a4-b02d-81ddbdf1d831.rna_seq.chimeric.gdc_realn.bam 166670744 BAM chimeric harmonized CPTAC3 d4475369-bf7e-4a08-98b7-7cb279e732c6 28de0e59c78b8be3f34d8b9f8c4cee1c { 'aliquot_tag': 'ALQ_24dd3feb', 'gdc_sample_type': 'Primary Tumor' } -C3N-00832.RNA-Seq.genomic.T.hg38 C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 b338b489-1752-49a4-b02d-81ddbdf1d831.rna_seq.genomic.gdc_realn.bam 7197046682 BAM genomic harmonized CPTAC3 62a8e604-e671-4ba0-9868-221fe4c500a5 5da326f6390567df37526f30dd7e42e3 { 'aliquot_tag': 'ALQ_24dd3feb', 'gdc_sample_type': 'Primary Tumor' } -C3N-00832.RNA-Seq.R1_L002.T C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L002_R1_001.fastq.gz 3711792225 FASTQ R1_L002 unaligned CPTAC3 4db2c00d-d95a-4bf3-99cc-a877881e4293 1a33480767fb018dca2922573ca4bc77 { 'aliquot_tag': 'ALQ_24dd3feb', 'gdc_sample_type': 'Primary Tumor' } -C3N-00832.RNA-Seq.R2_L002.T C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L002_R2_001.fastq.gz 3875699142 FASTQ R2_L002 unaligned CPTAC3 56707d27-a982-41f5-8436-0831ec5cbbfa 5076acbf715bfa1a54aae09145592081 { 'aliquot_tag': 'ALQ_24dd3feb', 'gdc_sample_type': 'Primary Tumor' } +C3N-00832.RNA-Seq.genomic.T.hg38 C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 b338b489-1752-49a4-b02d-81ddbdf1d831.rna_seq.genomic.gdc_realn.bam 7197046682 BAM genomic harmonized CPTAC3 35c6646b-eee0-434a-a799-b2b955ce72d5 5da326f6390567df37526f30dd7e42e3 { 'aliquot_tag': 'ALQ_24dd3feb', 'gdc_sample_type': 'Primary Tumor' } +C3N-00832.RNA-Seq.R1_L002.T C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L002_R1_001.fastq.gz 3711792225 FASTQ R1_L002 unaligned CPTAC3 4db2c00d-d95a-4bf3-99cc-a877881e4293 1a33480767fb018dca2922573ca4bc77 { 'aliquot_tag': 'ALQ_24dd3feb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00832.RNA-Seq.R2_L002.T C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L002_R2_001.fastq.gz 3875699142 FASTQ R2_L002 unaligned CPTAC3 56707d27-a982-41f5-8436-0831ec5cbbfa 5076acbf715bfa1a54aae09145592081 { 'aliquot_tag': 'ALQ_24dd3feb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-00832.RNA-Seq.transcriptome.T.hg38 C3N-00832 CCRCC RNA-Seq tumor CPT0078800006 b338b489-1752-49a4-b02d-81ddbdf1d831.rna_seq.transcriptome.gdc_realn.bam 10854837740 BAM transcriptome harmonized CPTAC3 3af562c2-8523-4873-9cd0-5161675ab403 e541b6b8683f53800789f7479093dedc { 'aliquot_tag': 'ALQ_24dd3feb', 'gdc_sample_type': 'Primary Tumor' } C3N-00832.WGS.N C3N-00832 CCRCC WGS blood_normal CPT0078820002 CPT0078820002.WholeGenome.RP-1303.bam 65830043608 BAM aligned CPTAC3 6a95bfb0-64f5-46cc-8b6a-588ddc8bcfbd 30d12620ea5123628f0139237e6c3990 { 'aliquot_tag': 'ALQ_5970a892', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00832.WGS.N.hg38 C3N-00832 CCRCC WGS blood_normal CPT0078820002 bfa631c6-91ae-44c0-b4c2-9841b9a66bd6_gdc_realn.bam 99357716545 BAM harmonized CPTAC3 f99c3235-1610-4f9d-bf68-7eb867d3b099 b6932f23951034630624c874c97c7fdb { 'aliquot_tag': 'ALQ_5970a892', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22737,12 +24594,12 @@ C3N-00834.miRNA-Seq.T C3N-00834 CCRCC miRNA-Seq tumor CPT0078830006 181012_UNC32 C3N-00834.miRNA-Seq.T.hg38 C3N-00834 CCRCC miRNA-Seq tumor CPT0078830006 d4b6f3f7-cd41-4e19-9b39-73ec5629a9e1_mirnaseq_gdc_realn.bam 310651020 BAM harmonized CPTAC3 47fe2a34-7cad-49aa-be0b-0f7fae76cbf8 57640bae67259b12dabd279f4ff05523 { 'aliquot_tag': 'ALQ_637d453b', 'gdc_sample_type': 'Primary Tumor' } C3N-00834.RNA-Seq.chimeric.A.hg38 C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 f613ef21-fae1-4f21-a63a-5ce2fd3facb6.rna_seq.chimeric.gdc_realn.bam 42421478 BAM chimeric harmonized CPTAC3 bdff0bdf-0ac2-4e9d-82c5-3c8a8162a00a 942efbbad7d887e9d40cd7ea87bd601a { 'aliquot_tag': 'ALQ_d15d992b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00834.RNA-Seq.chimeric.T.hg38 C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 5c3db05a-cc9b-4009-9ffd-e61a8b08bccf.rna_seq.chimeric.gdc_realn.bam 170263334 BAM chimeric harmonized CPTAC3 9fde1763-b115-4ef1-b232-fbe89dd62617 e20b3bf667d6170efe53ea2668056325 { 'aliquot_tag': 'ALQ_637d453b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00834.RNA-Seq.genomic.A.hg38 C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 f613ef21-fae1-4f21-a63a-5ce2fd3facb6.rna_seq.genomic.gdc_realn.bam 8296844679 BAM genomic harmonized CPTAC3 943d5b6f-27ac-4dc3-a340-cd787370e298 c9363e5d07cebf011c206a7a0d0a19bc { 'aliquot_tag': 'ALQ_d15d992b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00834.RNA-Seq.genomic.T.hg38 C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 5c3db05a-cc9b-4009-9ffd-e61a8b08bccf.rna_seq.genomic.gdc_realn.bam 8576316786 BAM genomic harmonized CPTAC3 0cbc87e4-e8bb-45a0-9021-f5684db4d744 14496087b2b858bb75f67a9e5b28a60e { 'aliquot_tag': 'ALQ_637d453b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00834.RNA-Seq.R1_L002.T C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L002_R1_001.fastq.gz 4105831499 FASTQ R1_L002 unaligned CPTAC3 a29dc27e-82dc-46be-8d51-e09157367501 efbd09f70ec1eb1de6415ab33de08bb6 { 'aliquot_tag': 'ALQ_637d453b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00834.RNA-Seq.R1_L006.A C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 180313_UNC32-K00270_0085_BHT2MGBBXX_CGTACG_S33_L006_R1_001.fastq.gz 3924986180 FASTQ R1_L006 unaligned CPTAC3 70813edb-6aad-47cc-b2d1-44787436cf6d c7a2246a14482cce5f85d2c0d89d958c { 'aliquot_tag': 'ALQ_d15d992b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00834.RNA-Seq.R2_L002.T C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L002_R2_001.fastq.gz 4416622812 FASTQ R2_L002 unaligned CPTAC3 17ada189-9329-4f1f-b2cf-c73171512d49 5fa1a11d3a9293acf078be398a39ac17 { 'aliquot_tag': 'ALQ_637d453b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00834.RNA-Seq.R2_L006.A C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 180313_UNC32-K00270_0085_BHT2MGBBXX_CGTACG_S33_L006_R2_001.fastq.gz 4309424292 FASTQ R2_L006 unaligned CPTAC3 b97d09aa-4301-41e5-b6fa-5c90cc81b4bf 34da619af2992cf8088aaa0afe9c4f87 { 'aliquot_tag': 'ALQ_d15d992b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00834.RNA-Seq.genomic.A.hg38 C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 f613ef21-fae1-4f21-a63a-5ce2fd3facb6.rna_seq.genomic.gdc_realn.bam 8296844679 BAM genomic harmonized CPTAC3 a95e0421-eebd-4f4f-9152-d14c53d37e7e c9363e5d07cebf011c206a7a0d0a19bc { 'aliquot_tag': 'ALQ_d15d992b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00834.RNA-Seq.genomic.T.hg38 C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 5c3db05a-cc9b-4009-9ffd-e61a8b08bccf.rna_seq.genomic.gdc_realn.bam 8576316786 BAM genomic harmonized CPTAC3 7e87c07d-bb84-4037-a75c-8e9204fe592b 14496087b2b858bb75f67a9e5b28a60e { 'aliquot_tag': 'ALQ_637d453b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00834.RNA-Seq.R1_L002.T C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L002_R1_001.fastq.gz 4105831499 FASTQ R1_L002 unaligned CPTAC3 a29dc27e-82dc-46be-8d51-e09157367501 efbd09f70ec1eb1de6415ab33de08bb6 { 'aliquot_tag': 'ALQ_637d453b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00834.RNA-Seq.R1_L006.A C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 180313_UNC32-K00270_0085_BHT2MGBBXX_CGTACG_S33_L006_R1_001.fastq.gz 3924986180 FASTQ R1_L006 unaligned CPTAC3 70813edb-6aad-47cc-b2d1-44787436cf6d c7a2246a14482cce5f85d2c0d89d958c { 'aliquot_tag': 'ALQ_d15d992b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00834.RNA-Seq.R2_L002.T C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L002_R2_001.fastq.gz 4416622812 FASTQ R2_L002 unaligned CPTAC3 17ada189-9329-4f1f-b2cf-c73171512d49 5fa1a11d3a9293acf078be398a39ac17 { 'aliquot_tag': 'ALQ_637d453b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-00834.RNA-Seq.R2_L006.A C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 180313_UNC32-K00270_0085_BHT2MGBBXX_CGTACG_S33_L006_R2_001.fastq.gz 4309424292 FASTQ R2_L006 unaligned CPTAC3 b97d09aa-4301-41e5-b6fa-5c90cc81b4bf 34da619af2992cf8088aaa0afe9c4f87 { 'aliquot_tag': 'ALQ_d15d992b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-00834.RNA-Seq.transcriptome.A.hg38 C3N-00834 CCRCC RNA-Seq tissue_normal CPT0078840006 f613ef21-fae1-4f21-a63a-5ce2fd3facb6.rna_seq.transcriptome.gdc_realn.bam 9092420505 BAM transcriptome harmonized CPTAC3 17de8650-69f2-4809-9415-204bc360ec63 e86e91ff27b10e14e87102e7322dd910 { 'aliquot_tag': 'ALQ_d15d992b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00834.RNA-Seq.transcriptome.T.hg38 C3N-00834 CCRCC RNA-Seq tumor CPT0078830006 5c3db05a-cc9b-4009-9ffd-e61a8b08bccf.rna_seq.transcriptome.gdc_realn.bam 12828349249 BAM transcriptome harmonized CPTAC3 583360c3-c86b-4a9a-8853-a14e78da1ec2 db74302a70d9cc3b79da9d1db51d2cfb { 'aliquot_tag': 'ALQ_637d453b', 'gdc_sample_type': 'Primary Tumor' } C3N-00834.WGS.A C3N-00834 CCRCC WGS tissue_normal CPT0078840009 CPT0078840009.WholeGenome.RP-1303.bam 63294348929 BAM aligned CPTAC3 b91d6d00-0fa5-4295-8037-3dbef2b675ca 91ac1297eb2ad3fe1c2d1d935d405661 { 'aliquot_tag': 'ALQ_41e284ba', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -22761,11 +24618,11 @@ C3N-00835.MethArray.Green.T C3N-00835 CCRCC Methylation Array tumor CPT037976000 C3N-00835.MethArray.Red.T C3N-00835 CCRCC Methylation Array tumor CPT0379760009 205589740002_R04C01_Red.idat 13677955 IDAT Red NA CPTAC3 d0799d49-2b6d-4403-86ba-85ad843a5bbc 8a2ef690946287762aa258bad05d10f9 { 'aliquot_tag': 'ALQ_558e527e', 'gdc_sample_type': 'Primary Tumor' } C3N-00835.miRNA-Seq.T C3N-00835 CCRCC miRNA-Seq tumor CPT0379760006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CGATGT_S43_L003_R1_001.unaln.bam 156332770 BAM unaligned CPTAC3 8916a64c-e1dd-4324-8be8-3cacd2992b93 bfaa8a6184509a1a47b24f919418cb74 { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor' } C3N-00835.miRNA-Seq.T.hg38 C3N-00835 CCRCC miRNA-Seq tumor CPT0379760006 fc8c60c7-9ba5-4176-b6e8-0093df3c0a09_mirnaseq_gdc_realn.bam 167584818 BAM harmonized CPTAC3 ae8c5d97-cd9e-445c-81b9-2f9c75963595 d704b8b2ca427287a3e3d501ce8d87f6 { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor' } -C3N-00835.RNA-Seq.chimeric.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 86507406-7eda-4fc1-8c23-f476f56d0179.rna_seq.chimeric.gdc_realn.bam 106196426 BAM chimeric harmonized CPTAC3 59ca9641-720a-45be-981f-afa7c61a6189 09dbf4a93ee63775cfd25520c190b1c9 { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor' } -C3N-00835.RNA-Seq.genomic.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 86507406-7eda-4fc1-8c23-f476f56d0179.rna_seq.genomic.gdc_realn.bam 10192890896 BAM genomic harmonized CPTAC3 46bda8c8-d780-43d0-863d-c9083f0a6743 a32bf0f78a8e27c496b4dc6e4cddbb35 { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor' } -C3N-00835.RNA-Seq.R1_L008.T C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 4647548336 FASTQ R1_L008 unaligned CPTAC3 31889c13-b96a-4e90-b7af-f4e9b8968d75 981b6098a1029a41dd192a5c7938c2b2 { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor' } -C3N-00835.RNA-Seq.R2_L008.T C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTATAACC-GATATCGA_S32_L008_R2_001.fastq.gz 5147785192 FASTQ R2_L008 unaligned CPTAC3 ad3fedb2-00e1-4987-bb86-d02a4f3c50d1 3cc565746d0c7672808b490e03df378a { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor' } -C3N-00835.RNA-Seq.transcriptome.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 86507406-7eda-4fc1-8c23-f476f56d0179.rna_seq.transcriptome.gdc_realn.bam 12057382582 BAM transcriptome harmonized CPTAC3 bbe208ae-3036-41f4-a75a-684feebf3af0 1d9857962c214e7e5462a0255136cba2 { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor' } +C3N-00835.RNA-Seq.chimeric.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 bdef2d26-c8a9-4675-90d2-78ac46b4369c.rna_seq.chimeric.gdc_realn.bam 106185527 BAM chimeric harmonized CPTAC3 64b015ff-4b13-4060-849f-13421e2810cb 78e17b998a744226e58d36d1df4fe2be { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor' } +C3N-00835.RNA-Seq.genomic.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 bdef2d26-c8a9-4675-90d2-78ac46b4369c.rna_seq.genomic.gdc_realn.bam 10205729254 BAM genomic harmonized CPTAC3 ba5b3934-2f9d-41e4-9fe4-1f52122ff890 1a60d72825ce0561bc266f1c410ffbd0 { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor' } +C3N-00835.RNA-Seq.R1_L008.T C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTATAACC-GATATCGA_S32_L008_R1_001.fastq.gz 4647548336 FASTQ R1_L008 unaligned CPTAC3 31889c13-b96a-4e90-b7af-f4e9b8968d75 981b6098a1029a41dd192a5c7938c2b2 { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00835.RNA-Seq.R2_L008.T C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTATAACC-GATATCGA_S32_L008_R2_001.fastq.gz 5147785192 FASTQ R2_L008 unaligned CPTAC3 ad3fedb2-00e1-4987-bb86-d02a4f3c50d1 3cc565746d0c7672808b490e03df378a { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00835.RNA-Seq.transcriptome.T.hg38 C3N-00835 CCRCC RNA-Seq tumor CPT0379760006 bdef2d26-c8a9-4675-90d2-78ac46b4369c.rna_seq.transcriptome.gdc_realn.bam 13793597745 BAM transcriptome harmonized CPTAC3 7ecb4399-cc7e-4993-a2e3-35b488e08a6a bb1d868df7f3ecf73d7dd200fcb303f4 { 'aliquot_tag': 'ALQ_c5314fef', 'gdc_sample_type': 'Primary Tumor' } C3N-00835.WGS.N C3N-00835 CCRCC WGS blood_normal CPT0386430002 CPT0386430002.WholeGenome.RP-2158.bam 22472743254 BAM aligned CPTAC3 f16ee0f0-819e-46e3-846f-7f8e5988fb91 0b347e6099b0038cc82a2c89d8cf918f { 'aliquot_tag': 'ALQ_a340146d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00835.WGS.N.hg38 C3N-00835 CCRCC WGS blood_normal CPT0386430002 23fe606a-7dc4-4b22-bb46-92bdef045100_wgs_gdc_realn.bam 66475736026 BAM harmonized CPTAC3 f58baf98-491c-455a-b819-fe36bf57b223 1fd4be631561ee6abf375ca6d4b0a23d { 'aliquot_tag': 'ALQ_a340146d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00835.WGS.T C3N-00835 CCRCC WGS tumor CPT0379760009 CPT0379760009.WholeGenome.RP-2158.bam 22773167943 BAM aligned CPTAC3 685c3d85-b4d7-4ab5-99c6-468e36720544 4fe5bbe741b2dc77038417b86893e399 { 'aliquot_tag': 'ALQ_558e527e', 'gdc_sample_type': 'Primary Tumor' } @@ -22780,8 +24637,8 @@ C3N-00836.miRNA-Seq.T C3N-00836 UCEC miRNA-Seq tumor CPT0023810006 180924_UNC31- C3N-00836.miRNA-Seq.T.hg38 C3N-00836 UCEC miRNA-Seq tumor CPT0023810006 01defb40-46cb-481d-b6e3-3be864e6e156_mirnaseq_gdc_realn.bam 219415194 BAM harmonized CPTAC3 94e6a782-c0f3-4bee-a62c-2ce90e1e1586 2d05ecdcfa5454f2fc2dbf412383be07 { 'aliquot_tag': 'ALQ_535a4cc5', 'gdc_sample_type': 'Primary Tumor' } C3N-00836.RNA-Seq.chimeric.T.hg38 C3N-00836 UCEC RNA-Seq tumor CPT0023810006 3fc51c4d-2cc8-495e-b5ef-7a25fc220f6e.rna_seq.chimeric.gdc_realn.bam 83346250 BAM chimeric harmonized CPTAC3 49d5419f-906f-4fda-ac7a-17f058676293 61c44176cebeefca1f345d1f16c12c9b { 'aliquot_tag': 'ALQ_535a4cc5', 'gdc_sample_type': 'Primary Tumor' } C3N-00836.RNA-Seq.genomic.T.hg38 C3N-00836 UCEC RNA-Seq tumor CPT0023810006 3fc51c4d-2cc8-495e-b5ef-7a25fc220f6e.rna_seq.genomic.gdc_realn.bam 7690638681 BAM genomic harmonized CPTAC3 e9ded5c6-aa0b-43db-ab41-3ccf444a1b76 57a18677766ee44894fadf69d3c07c71 { 'aliquot_tag': 'ALQ_535a4cc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00836.RNA-Seq.R1_L008.T C3N-00836 UCEC RNA-Seq tumor CPT0023810006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L008_R1_001.fastq.gz 3739893939 FASTQ R1_L008 unaligned CPTAC3 f19c6938-942c-47bd-b72d-79d62e8fbeb8 f32f43a984b9abc8e38b7243862d2520 { 'aliquot_tag': 'ALQ_535a4cc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-00836.RNA-Seq.R2_L008.T C3N-00836 UCEC RNA-Seq tumor CPT0023810006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L008_R2_001.fastq.gz 4041503918 FASTQ R2_L008 unaligned CPTAC3 5c51da7e-eead-4fd1-8343-c4d4ddc19458 b7eea84db3b7e1722e2aafa22c84f267 { 'aliquot_tag': 'ALQ_535a4cc5', 'gdc_sample_type': 'Primary Tumor' } +C3N-00836.RNA-Seq.R1_L008.T C3N-00836 UCEC RNA-Seq tumor CPT0023810006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L008_R1_001.fastq.gz 3739893939 FASTQ R1_L008 unaligned CPTAC3 f19c6938-942c-47bd-b72d-79d62e8fbeb8 f32f43a984b9abc8e38b7243862d2520 { 'aliquot_tag': 'ALQ_535a4cc5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00836.RNA-Seq.R2_L008.T C3N-00836 UCEC RNA-Seq tumor CPT0023810006 170912_UNC31-K00269_0081_AHL3YKBBXX_TTAGGC_S6_L008_R2_001.fastq.gz 4041503918 FASTQ R2_L008 unaligned CPTAC3 5c51da7e-eead-4fd1-8343-c4d4ddc19458 b7eea84db3b7e1722e2aafa22c84f267 { 'aliquot_tag': 'ALQ_535a4cc5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00836.RNA-Seq.transcriptome.T.hg38 C3N-00836 UCEC RNA-Seq tumor CPT0023810006 3fc51c4d-2cc8-495e-b5ef-7a25fc220f6e.rna_seq.transcriptome.gdc_realn.bam 9978064516 BAM transcriptome harmonized CPTAC3 2f4565f6-f8dc-4ecf-a91d-a6f558ed2799 0ec0ac967ed230a6193cc51b8ebcb312 { 'aliquot_tag': 'ALQ_535a4cc5', 'gdc_sample_type': 'Primary Tumor' } C3N-00836.WGS.N C3N-00836 UCEC WGS blood_normal CPT0023910002 CPT0023910002.WholeGenome.RP-1303.bam 61848680396 BAM aligned CPTAC3 f7292774-63e7-48af-b349-5baa0bfae812 2bcdd0ffc71ed8618fe3bc780f3d3301 { 'aliquot_tag': 'ALQ_9f6b5b79', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00836.WGS.N.hg38 C3N-00836 UCEC WGS blood_normal CPT0023910002 fa4f35a1-cb0a-4d92-8631-4f675161b355_gdc_realn.bam 90862219577 BAM harmonized CPTAC3 09220dab-d4b0-4d15-bb22-a222b5d0abc1 dd11dd26ad360ce6062448da11776ccd { 'aliquot_tag': 'ALQ_9f6b5b79', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22795,11 +24652,11 @@ C3N-00839.MethArray.Green.T C3N-00839 LSCC Methylation Array tumor CPT0024970009 C3N-00839.MethArray.Red.T C3N-00839 LSCC Methylation Array tumor CPT0024970009 202163530120_R06C01_Red.idat 13676216 IDAT Red NA CPTAC3 9e340afb-246b-4d85-8f49-902d4e043893 8b9fab0f91b00a977897d534651b5b0c { 'aliquot_tag': 'ALQ_425e49df', 'gdc_sample_type': 'Primary Tumor' } C3N-00839.miRNA-Seq.T C3N-00839 LSCC miRNA-Seq tumor CPT0024970006 180924_UNC31-K00269_0154_AHWTMLBBXX_GGCTAC_S45_L003_R1_001.unaln.bam 216944500 BAM unaligned CPTAC3 14814052-e05f-4230-896f-7f4a6bf54ec8 3118e0b23b25209d99cf21a415c25fc3 { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor' } C3N-00839.miRNA-Seq.T.hg38 C3N-00839 LSCC miRNA-Seq tumor CPT0024970006 db2bd953-a615-4adc-8d1b-bdbfd1202a1a_mirnaseq_gdc_realn.bam 238489079 BAM harmonized CPTAC3 c1efc64c-b795-4f1e-84aa-885bc4506d3f eec2f833ce01bef8fd5aeedeac975929 { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00839.RNA-Seq.chimeric.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 05f572ac-7aac-4330-983a-16e272b58ec9.rna_seq.chimeric.gdc_realn.bam 88773464 BAM chimeric harmonized CPTAC3 43cb1f70-82b7-467e-aab6-370fb980f702 c4e7e62852ef16fc9fd0e4a0ae1ec988 { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00839.RNA-Seq.genomic.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 05f572ac-7aac-4330-983a-16e272b58ec9.rna_seq.genomic.gdc_realn.bam 8107700415 BAM genomic harmonized CPTAC3 c3632be7-a897-4c69-8008-3f0c2277f98c 92a616f0dc50e4419eec61b953c26b99 { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00839.RNA-Seq.R1_L008.T C3N-00839 LSCC RNA-Seq tumor CPT0024970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATCACG_S22_L008_R1_001.fastq.gz 3780572540 FASTQ R1_L008 unaligned CPTAC3 d7fe377f-d586-48cc-94f7-88acb6cbc016 df81ef6ef55e71da2b5ff05a6fdc4436 { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00839.RNA-Seq.R2_L008.T C3N-00839 LSCC RNA-Seq tumor CPT0024970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATCACG_S22_L008_R2_001.fastq.gz 3809319737 FASTQ R2_L008 unaligned CPTAC3 9fea3417-da33-45a7-a57f-93e97151289d 52143e51cede8a5f40ed110e54925832 { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00839.RNA-Seq.transcriptome.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 05f572ac-7aac-4330-983a-16e272b58ec9.rna_seq.transcriptome.gdc_realn.bam 8419684895 BAM transcriptome harmonized CPTAC3 f963c54d-cda9-460f-88d3-a20dfec0484b ed72b111d6085b387ef15ba64aa0d032 { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00839.RNA-Seq.chimeric.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 d6694fbf-d4dc-4482-b236-52bf01c4bc56.rna_seq.chimeric.gdc_realn.bam 88812673 BAM chimeric harmonized CPTAC3 7b9a27b5-1a1c-45e9-986a-881fa46fcd48 154448d800ce8cc8583232c83082ff7c { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00839.RNA-Seq.genomic.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 d6694fbf-d4dc-4482-b236-52bf01c4bc56.rna_seq.genomic.gdc_realn.bam 8110345357 BAM genomic harmonized CPTAC3 f1833804-0512-498f-ad0e-e27d641500e4 9b5a01d34186658c63846b4eed82b846 { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00839.RNA-Seq.R1_L008.T C3N-00839 LSCC RNA-Seq tumor CPT0024970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATCACG_S22_L008_R1_001.fastq.gz 3780572540 FASTQ R1_L008 unaligned CPTAC3 d7fe377f-d586-48cc-94f7-88acb6cbc016 df81ef6ef55e71da2b5ff05a6fdc4436 { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00839.RNA-Seq.R2_L008.T C3N-00839 LSCC RNA-Seq tumor CPT0024970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATCACG_S22_L008_R2_001.fastq.gz 3809319737 FASTQ R2_L008 unaligned CPTAC3 9fea3417-da33-45a7-a57f-93e97151289d 52143e51cede8a5f40ed110e54925832 { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00839.RNA-Seq.transcriptome.T.hg38 C3N-00839 LSCC RNA-Seq tumor CPT0024970006 d6694fbf-d4dc-4482-b236-52bf01c4bc56.rna_seq.transcriptome.gdc_realn.bam 9322250128 BAM transcriptome harmonized CPTAC3 a5a6585a-fe35-4972-927d-2e727f6e156e 14791355ec662f013277f84178bf02da { 'aliquot_tag': 'ALQ_d2e1544e', 'gdc_sample_type': 'Primary Tumor' } C3N-00839.WGS.N C3N-00839 LSCC WGS blood_normal CPT0026180002 CPT0026180002.WholeGenome.RP-1303.bam 89334773314 BAM aligned CPTAC3 d7e9b08a-c0b0-41b8-81f8-fd9febae970d 4cb1f9cfdc2c9eedd1660fa07b845ea6 { 'aliquot_tag': 'ALQ_2c1094c2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00839.WGS.N.hg38 C3N-00839 LSCC WGS blood_normal CPT0026180002 516dbdf8-2b5a-4bb3-ae4e-95c4d3700e6c_gdc_realn.bam 139953537186 BAM harmonized CPTAC3 2afa22d9-5b15-4eee-91e4-b9b52787d940 e979bfd6c7e55aa0d0d188f4c75c2993 { 'aliquot_tag': 'ALQ_2c1094c2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00839.WGS.T C3N-00839 LSCC WGS tumor CPT0024970009 CPT0024970009.WholeGenome.RP-1303.bam 68501059023 BAM aligned CPTAC3 62694aa0-71f1-4cc8-9e78-fcec4dcfba13 480fcd2d8e51eb61be226b292ca6eb58 { 'aliquot_tag': 'ALQ_425e49df', 'gdc_sample_type': 'Primary Tumor' } @@ -22814,16 +24671,16 @@ C3N-00843.miRNA-Seq.A C3N-00843 SAR miRNA-Seq tissue_normal CPT0024000008 181119 C3N-00843.miRNA-Seq.A.hg38 C3N-00843 SAR miRNA-Seq tissue_normal CPT0024000008 f11d406d-13f0-4d8f-93c8-05176be0e8db_mirnaseq_gdc_realn.bam 282180031 BAM harmonized CPTAC3 0fd04183-c02c-4843-8001-a5797a84e65d 2ddbee8f40acedfbd4341453570c21c7 { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00843.miRNA-Seq.T C3N-00843 SAR miRNA-Seq tumor CPT0023990014 181113_UNC31-K00269_0164_AH23NNBBXY_GACGAC_S17_L001_R1_001.unaln.bam 240272678 BAM unaligned CPTAC3 ebb41522-e79b-49af-b1e2-11e043272ed3 d03cc9673b612f9430293288e0e11ed8 { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor' } C3N-00843.miRNA-Seq.T.hg38 C3N-00843 SAR miRNA-Seq tumor CPT0023990014 bb465d9f-24fa-421b-96ce-d5a4d4990188_mirnaseq_gdc_realn.bam 271338919 BAM harmonized CPTAC3 e8586fb1-099b-467e-99d9-a3b7d8a12cd4 986eeb6025cd30a51b55efe289518cb1 { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00843.RNA-Seq.chimeric.A.hg38 C3N-00843 SAR RNA-Seq tissue_normal CPT0024000008 0dfa6979-30f2-4e83-9488-8265d9fd9aa1.rna_seq.chimeric.gdc_realn.bam 37542256 BAM chimeric harmonized CPTAC3 068e20f6-f9b6-47c8-91ef-75ab436ed160 f67663d470e5b8df59526952cb7ce775 { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00843.RNA-Seq.chimeric.T.hg38 C3N-00843 SAR RNA-Seq tumor CPT0023990014 9f13eb9c-fdc5-4f2b-bf0c-ccc662a8c278.rna_seq.chimeric.gdc_realn.bam 58426119 BAM chimeric harmonized CPTAC3 55a3775e-8f2c-44ca-a146-65d2c9b5d798 b8bbab88eda5853e8ea30697e3f73854 { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00843.RNA-Seq.genomic.A.hg38 C3N-00843 SAR RNA-Seq tissue_normal CPT0024000008 0dfa6979-30f2-4e83-9488-8265d9fd9aa1.rna_seq.genomic.gdc_realn.bam 8878963340 BAM genomic harmonized CPTAC3 22f9a901-1d72-4e73-a54d-3a5c6b0aa006 b588219fd3238c2c06b389caa2fac0d5 { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00843.RNA-Seq.genomic.T.hg38 C3N-00843 SAR RNA-Seq tumor CPT0023990014 9f13eb9c-fdc5-4f2b-bf0c-ccc662a8c278.rna_seq.genomic.gdc_realn.bam 7432961155 BAM genomic harmonized CPTAC3 37a39b80-4645-4b13-9a9b-8eb8420c5da2 8487e5f218c609484c0ce8b0058100bd { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00843.RNA-Seq.R1_L006.A C3N-00843 SAR RNA-Seq tissue_normal CPT0024000008 180516_UNC31-K00269_0130_BHV22JBBXX_ACTGAT_S21_L006_R1_001.fastq.gz 4216326711 FASTQ R1_L006 unaligned CPTAC3 818fd0da-1ed6-4cc6-9408-ad12e83b64e0 de1497cabaf622c81780553e6e341f9c { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00843.RNA-Seq.R1_L007.T C3N-00843 SAR RNA-Seq tumor CPT0023990014 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L007_R1_001.fastq.gz 3382977633 FASTQ R1_L007 unaligned CPTAC3 078e1480-efc7-4e55-ab38-3b0f72bfeded e74dce41b43626d8b578b58e8decd206 { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00843.RNA-Seq.R2_L006.A C3N-00843 SAR RNA-Seq tissue_normal CPT0024000008 180516_UNC31-K00269_0130_BHV22JBBXX_ACTGAT_S21_L006_R2_001.fastq.gz 4592688281 FASTQ R2_L006 unaligned CPTAC3 a681e3a3-4666-4b85-8005-053bd59d5aa7 68ea9d21839909f9e7839acfedc9b874 { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00843.RNA-Seq.R2_L007.T C3N-00843 SAR RNA-Seq tumor CPT0023990014 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L007_R2_001.fastq.gz 3617235800 FASTQ R2_L007 unaligned CPTAC3 028d5c1d-29b6-4eff-b717-3c2b37dcbac2 c996322958621c31da9cf21c7e27baed { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor' } -C3N-00843.RNA-Seq.transcriptome.A.hg38 C3N-00843 SAR RNA-Seq tissue_normal CPT0024000008 0dfa6979-30f2-4e83-9488-8265d9fd9aa1.rna_seq.transcriptome.gdc_realn.bam 11192882084 BAM transcriptome harmonized CPTAC3 ebc7674d-fdda-4b76-85b0-c9aea3249642 d472dd7a51055951463f8fe5e7616ec7 { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00843.RNA-Seq.transcriptome.T.hg38 C3N-00843 SAR RNA-Seq tumor CPT0023990014 9f13eb9c-fdc5-4f2b-bf0c-ccc662a8c278.rna_seq.transcriptome.gdc_realn.bam 8010057271 BAM transcriptome harmonized CPTAC3 302e6f88-9f86-4c63-b62c-fbff78dd8b8c 51e08a455d2f90f81030b4d9eaa527a2 { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor' } +C3N-00843.RNA-Seq.chimeric.A.hg38 C3N-00843 SAR RNA-Seq tissue_normal CPT0024000008 98819a12-f1f2-4cdc-8e02-05aef1341cdf.rna_seq.chimeric.gdc_realn.bam 37539047 BAM chimeric harmonized CPTAC3 d4f91966-6c26-4881-aa53-badf608f93ad eeb187c8b242f3afb6eb0ef3867d9287 { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00843.RNA-Seq.chimeric.T.hg38 C3N-00843 SAR RNA-Seq tumor CPT0023990014 a83143e1-6926-4a6c-8ab0-e83b74ce10a4.rna_seq.chimeric.gdc_realn.bam 58412915 BAM chimeric harmonized CPTAC3 8b207ef3-336a-4c50-a542-81e647581fa5 62ff5b399708e25d729bc1ee3bc2c628 { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor' } +C3N-00843.RNA-Seq.genomic.A.hg38 C3N-00843 SAR RNA-Seq tissue_normal CPT0024000008 98819a12-f1f2-4cdc-8e02-05aef1341cdf.rna_seq.genomic.gdc_realn.bam 8879817135 BAM genomic harmonized CPTAC3 c5bd477f-6732-4785-84c9-54afd0f79427 083933e018423328952f476255abe7d0 { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00843.RNA-Seq.genomic.T.hg38 C3N-00843 SAR RNA-Seq tumor CPT0023990014 a83143e1-6926-4a6c-8ab0-e83b74ce10a4.rna_seq.genomic.gdc_realn.bam 7433597547 BAM genomic harmonized CPTAC3 b10c015f-faa2-456c-90f3-88d6e29516ae 7405356086c1dd2340110de6fd4d6898 { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor' } +C3N-00843.RNA-Seq.R1_L006.A C3N-00843 SAR RNA-Seq tissue_normal CPT0024000008 180516_UNC31-K00269_0130_BHV22JBBXX_ACTGAT_S21_L006_R1_001.fastq.gz 4216326711 FASTQ R1_L006 unaligned CPTAC3 818fd0da-1ed6-4cc6-9408-ad12e83b64e0 de1497cabaf622c81780553e6e341f9c { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-00843.RNA-Seq.R1_L007.T C3N-00843 SAR RNA-Seq tumor CPT0023990014 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L007_R1_001.fastq.gz 3382977633 FASTQ R1_L007 unaligned CPTAC3 078e1480-efc7-4e55-ab38-3b0f72bfeded e74dce41b43626d8b578b58e8decd206 { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00843.RNA-Seq.R2_L006.A C3N-00843 SAR RNA-Seq tissue_normal CPT0024000008 180516_UNC31-K00269_0130_BHV22JBBXX_ACTGAT_S21_L006_R2_001.fastq.gz 4592688281 FASTQ R2_L006 unaligned CPTAC3 a681e3a3-4666-4b85-8005-053bd59d5aa7 68ea9d21839909f9e7839acfedc9b874 { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-00843.RNA-Seq.R2_L007.T C3N-00843 SAR RNA-Seq tumor CPT0023990014 170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L007_R2_001.fastq.gz 3617235800 FASTQ R2_L007 unaligned CPTAC3 028d5c1d-29b6-4eff-b717-3c2b37dcbac2 c996322958621c31da9cf21c7e27baed { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-00843.RNA-Seq.transcriptome.A.hg38 C3N-00843 SAR RNA-Seq tissue_normal CPT0024000008 98819a12-f1f2-4cdc-8e02-05aef1341cdf.rna_seq.transcriptome.gdc_realn.bam 12556716933 BAM transcriptome harmonized CPTAC3 f92f7a92-8cdc-42e4-a90b-d7071796007e ab59bb2c074352cc3c071d56240bcbea { 'aliquot_tag': 'ALQ_a076f491', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00843.RNA-Seq.transcriptome.T.hg38 C3N-00843 SAR RNA-Seq tumor CPT0023990014 a83143e1-6926-4a6c-8ab0-e83b74ce10a4.rna_seq.transcriptome.gdc_realn.bam 9046835974 BAM transcriptome harmonized CPTAC3 9a87847a-c057-41c1-bafe-c60d197cc744 702bd11c61b90e6be03b605f72ff5213 { 'aliquot_tag': 'ALQ_5f6384cc', 'gdc_sample_type': 'Primary Tumor' } C3N-00843.WGS.A C3N-00843 SAR WGS tissue_normal CPT0024000006 CPT0024000006.WholeGenome.RP-1303.bam 61383846182 BAM aligned CPTAC3 0c59c89c-479f-4e16-9b3e-83fac2200642 83a986be07227c4bd29f634a91e17001 { 'aliquot_tag': 'ALQ_47ced996', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00843.WGS.A.hg38 C3N-00843 SAR WGS tissue_normal CPT0024000006 ef58350a-4eab-4ce4-948e-8cff9932a78d_wgs_gdc_realn.bam 89796045854 BAM harmonized CPTAC3 94f55881-e2b4-4c0a-b743-9d9fd4a40aa0 dab9e0a1a61d15835547b6b25d651001 { 'aliquot_tag': 'ALQ_47ced996', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00843.WGS.N C3N-00843 SAR WGS blood_normal CPT0024060002 CPT0024060002.WholeGenome.RP-1303.bam 78806199664 BAM aligned CPTAC3 e11093a1-c30a-48d9-a70c-8213b58bcb3b e692eaf725cafbd934c59107ab1aa338 { 'aliquot_tag': 'ALQ_cfe3e82f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22841,9 +24698,9 @@ C3N-00846.MethArray.Red.T C3N-00846 HNSCC Methylation Array tumor CPT0024810009 C3N-00846.miRNA-Seq.T C3N-00846 HNSCC miRNA-Seq tumor CPT0024810006 181113_UNC31-K00269_0164_AH23NNBBXY_CACTCA_S8_L003_R1_001.unaln.bam 259323326 BAM unaligned CPTAC3 d5085069-3bec-4a1a-97c4-413226426357 2a0816749b52f7d98ebd223ec763af4f { 'aliquot_tag': 'ALQ_96fd724b', 'gdc_sample_type': 'Primary Tumor' } C3N-00846.miRNA-Seq.T.hg38 C3N-00846 HNSCC miRNA-Seq tumor CPT0024810006 9e849a3d-7532-4785-820c-700b2bda8dea_mirnaseq_gdc_realn.bam 281318645 BAM harmonized CPTAC3 7f2b11a3-1a9b-47c7-80c3-e1d5b74e1d1d d13912cc3b9bc287e722e2d0b2b7f7ab { 'aliquot_tag': 'ALQ_96fd724b', 'gdc_sample_type': 'Primary Tumor' } C3N-00846.RNA-Seq.chimeric.T.hg38 C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 8efa1233-2c93-4d81-a268-7972bb5e5a35.rna_seq.chimeric.gdc_realn.bam 112345312 BAM chimeric harmonized CPTAC3 4a330e56-b2e6-473b-b3fe-9d74fdd5f6e1 7198694e2b81390091d201c9dcff701d { 'aliquot_tag': 'ALQ_96fd724b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00846.RNA-Seq.genomic.T.hg38 C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 8efa1233-2c93-4d81-a268-7972bb5e5a35.rna_seq.genomic.gdc_realn.bam 9358590589 BAM genomic harmonized CPTAC3 5a0e3a58-8f3d-41f6-8aca-1042780a9b7f 5a1b495d2c9f6ac2411b36c82fe4ea41 { 'aliquot_tag': 'ALQ_96fd724b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00846.RNA-Seq.R1_L008.T C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L008_R1_001.fastq.gz 4409378702 FASTQ R1_L008 unaligned CPTAC3 d6a534be-f72c-48fd-b081-b621cf712da6 a8e040d173ab71c00ac77987ba70ebe3 { 'aliquot_tag': 'ALQ_96fd724b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00846.RNA-Seq.R2_L008.T C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L008_R2_001.fastq.gz 4778156021 FASTQ R2_L008 unaligned CPTAC3 49ae8013-5534-42f9-9c67-921897c83feb 4c113db538277d09fd96cfae08f3ce39 { 'aliquot_tag': 'ALQ_96fd724b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00846.RNA-Seq.genomic.T.hg38 C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 8efa1233-2c93-4d81-a268-7972bb5e5a35.rna_seq.genomic.gdc_realn.bam 9358590589 BAM genomic harmonized CPTAC3 655b16ed-6152-4c58-8a27-32acf5a64a4b 5a1b495d2c9f6ac2411b36c82fe4ea41 { 'aliquot_tag': 'ALQ_96fd724b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00846.RNA-Seq.R1_L008.T C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L008_R1_001.fastq.gz 4409378702 FASTQ R1_L008 unaligned CPTAC3 d6a534be-f72c-48fd-b081-b621cf712da6 a8e040d173ab71c00ac77987ba70ebe3 { 'aliquot_tag': 'ALQ_96fd724b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00846.RNA-Seq.R2_L008.T C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGATGT_S5_L008_R2_001.fastq.gz 4778156021 FASTQ R2_L008 unaligned CPTAC3 49ae8013-5534-42f9-9c67-921897c83feb 4c113db538277d09fd96cfae08f3ce39 { 'aliquot_tag': 'ALQ_96fd724b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-00846.RNA-Seq.transcriptome.T.hg38 C3N-00846 HNSCC RNA-Seq tumor CPT0024810006 8efa1233-2c93-4d81-a268-7972bb5e5a35.rna_seq.transcriptome.gdc_realn.bam 11002126024 BAM transcriptome harmonized CPTAC3 1939d06b-d192-43e1-8a31-2723ced8c9cb b597b337d452798f7ab0f51eb87bda49 { 'aliquot_tag': 'ALQ_96fd724b', 'gdc_sample_type': 'Primary Tumor' } C3N-00846.WGS.N C3N-00846 HNSCC WGS blood_normal CPT0024890002 CPT0024890002.WholeGenome.RP-1303.bam 85879023449 BAM aligned CPTAC3 68e7cca7-98d5-4cc5-8423-2ba638053778 5708e81cb3b97b83b9e283611391a4e1 { 'aliquot_tag': 'ALQ_a1e0fd93', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00846.WGS.N.hg38 C3N-00846 HNSCC WGS blood_normal CPT0024890002 50ca401a-353c-4ac6-b5b1-10ef34bcc849_gdc_realn.bam 134628683555 BAM harmonized CPTAC3 88ab56f7-89d2-4247-86c8-e168f53c54b6 556bc42d0e6c0b01b3d1c15aad3cec14 { 'aliquot_tag': 'ALQ_a1e0fd93', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22859,8 +24716,8 @@ C3N-00847.miRNA-Seq.T C3N-00847 UCEC miRNA-Seq tumor CPT0027650006 180924_UNC31- C3N-00847.miRNA-Seq.T.hg38 C3N-00847 UCEC miRNA-Seq tumor CPT0027650006 468d31bf-b629-4639-96e0-261fd3742870_mirnaseq_gdc_realn.bam 191854955 BAM harmonized CPTAC3 ab359813-4f0a-45e9-a2f4-783c53b71a2f 2021562baa01bb820db2d5f0d342de27 { 'aliquot_tag': 'ALQ_689faf66', 'gdc_sample_type': 'Primary Tumor' } C3N-00847.RNA-Seq.chimeric.T.hg38 C3N-00847 UCEC RNA-Seq tumor CPT0027650006 c1f2ea2b-7576-4d3d-ab1f-7d4592146140.rna_seq.chimeric.gdc_realn.bam 36382978 BAM chimeric harmonized CPTAC3 355ddceb-c1ab-4f30-a624-241d762ff5d2 27d6d8eaf81999672614c9512b4a6c05 { 'aliquot_tag': 'ALQ_689faf66', 'gdc_sample_type': 'Primary Tumor' } C3N-00847.RNA-Seq.genomic.T.hg38 C3N-00847 UCEC RNA-Seq tumor CPT0027650006 c1f2ea2b-7576-4d3d-ab1f-7d4592146140.rna_seq.genomic.gdc_realn.bam 9418635827 BAM genomic harmonized CPTAC3 97c8b7b7-7975-42ab-a6a1-bd1eaa6288c2 48299d486e3e075948891e53173d042f { 'aliquot_tag': 'ALQ_689faf66', 'gdc_sample_type': 'Primary Tumor' } -C3N-00847.RNA-Seq.R1_L002.T C3N-00847 UCEC RNA-Seq tumor CPT0027650006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4868159696 FASTQ R1_L002 unaligned CPTAC3 a3c73a24-ad46-4690-a782-0c9de7554f6b dfb31d13b1637fda657a7ce887cddae7 { 'aliquot_tag': 'ALQ_689faf66', 'gdc_sample_type': 'Primary Tumor' } -C3N-00847.RNA-Seq.R2_L002.T C3N-00847 UCEC RNA-Seq tumor CPT0027650006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L002_R2_001.fastq.gz 5214500174 FASTQ R2_L002 unaligned CPTAC3 33715f26-60b2-4c5d-994c-00faa767e9be 7f92b7c2bad607c3ceec9057e131b0e9 { 'aliquot_tag': 'ALQ_689faf66', 'gdc_sample_type': 'Primary Tumor' } +C3N-00847.RNA-Seq.R1_L002.T C3N-00847 UCEC RNA-Seq tumor CPT0027650006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L002_R1_001.fastq.gz 4868159696 FASTQ R1_L002 unaligned CPTAC3 a3c73a24-ad46-4690-a782-0c9de7554f6b dfb31d13b1637fda657a7ce887cddae7 { 'aliquot_tag': 'ALQ_689faf66', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00847.RNA-Seq.R2_L002.T C3N-00847 UCEC RNA-Seq tumor CPT0027650006 170830_UNC31-K00269_0078_AHLCVMBBXX_CGATGT_S6_L002_R2_001.fastq.gz 5214500174 FASTQ R2_L002 unaligned CPTAC3 33715f26-60b2-4c5d-994c-00faa767e9be 7f92b7c2bad607c3ceec9057e131b0e9 { 'aliquot_tag': 'ALQ_689faf66', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-00847.RNA-Seq.transcriptome.T.hg38 C3N-00847 UCEC RNA-Seq tumor CPT0027650006 c1f2ea2b-7576-4d3d-ab1f-7d4592146140.rna_seq.transcriptome.gdc_realn.bam 11499714813 BAM transcriptome harmonized CPTAC3 549fb9e1-0cdc-4793-8325-202e7b397250 8c6053a34964ef8442e7bdb4993ac894 { 'aliquot_tag': 'ALQ_689faf66', 'gdc_sample_type': 'Primary Tumor' } C3N-00847.WGS.N C3N-00847 UCEC WGS blood_normal CPT0027740002 CPT0027740002.WholeGenome.RP-1303.bam 64327564784 BAM aligned CPTAC3 095599c0-d54e-41e9-80b6-b721e2bb357a ba2337a09b0d875382558ace5993f196 { 'aliquot_tag': 'ALQ_99ce916a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00847.WGS.N.hg38 C3N-00847 UCEC WGS blood_normal CPT0027740002 9333c264-b25a-4ad9-8cbc-60d4d961a1e4_gdc_realn.bam 93972603059 BAM harmonized CPTAC3 fbdad251-d8da-4651-9e23-ab9aa7ebdfca 65cdf4a8b855ea825f788cbd17766f3f { 'aliquot_tag': 'ALQ_99ce916a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22875,9 +24732,9 @@ C3N-00848.MethArray.Red.T C3N-00848 UCEC Methylation Array tumor CPT0024130009 2 C3N-00848.miRNA-Seq.T C3N-00848 UCEC miRNA-Seq tumor CPT0024130006 180924_UNC31-K00269_0154_AHWTMLBBXX_GCCAAT_S21_L003_R1_001.unaln.bam 252901822 BAM unaligned CPTAC3 5f56c26f-133b-4a16-a93c-95ba5024a97e 157f17d357b2b7028f0ab57d21d83435 { 'aliquot_tag': 'ALQ_cb3270e3', 'gdc_sample_type': 'Primary Tumor' } C3N-00848.miRNA-Seq.T.hg38 C3N-00848 UCEC miRNA-Seq tumor CPT0024130006 bc90c25c-ea60-49db-be31-98c7448dbcda_mirnaseq_gdc_realn.bam 274690623 BAM harmonized CPTAC3 7b5cf3c4-5a3d-45f8-9c32-a94dfd42a929 e53583da36659ce0ce6f0d71a56fe35a { 'aliquot_tag': 'ALQ_cb3270e3', 'gdc_sample_type': 'Primary Tumor' } C3N-00848.RNA-Seq.chimeric.T.hg38 C3N-00848 UCEC RNA-Seq tumor CPT0024130006 a854785d-221b-4e79-b862-141a2cbcf6af.rna_seq.chimeric.gdc_realn.bam 80215740 BAM chimeric harmonized CPTAC3 54c058be-e870-49e4-ad67-06dc474162d8 5a8e33f6b76ea5f16d6c4bda7d53bef1 { 'aliquot_tag': 'ALQ_cb3270e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00848.RNA-Seq.genomic.T.hg38 C3N-00848 UCEC RNA-Seq tumor CPT0024130006 a854785d-221b-4e79-b862-141a2cbcf6af.rna_seq.genomic.gdc_realn.bam 9212739487 BAM genomic harmonized CPTAC3 230ae735-7848-4ce7-a366-86e83f0f9eb0 1855955feb321e78eac4f5ff363ddfa5 { 'aliquot_tag': 'ALQ_cb3270e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00848.RNA-Seq.R1_L001.T C3N-00848 UCEC RNA-Seq tumor CPT0024130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTGGCC_S3_L001_R1_001.fastq.gz 4443710715 FASTQ R1_L001 unaligned CPTAC3 6e88806d-df9b-40b0-9ab9-d5f5265ef294 8b02ff193595023341e4336fef4afc9a { 'aliquot_tag': 'ALQ_cb3270e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00848.RNA-Seq.R2_L001.T C3N-00848 UCEC RNA-Seq tumor CPT0024130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTGGCC_S3_L001_R2_001.fastq.gz 4909078498 FASTQ R2_L001 unaligned CPTAC3 b8f22b8f-204c-48b4-8147-5c9caf3c2f76 305c3bf3d0ee1b366524ef93b8615b27 { 'aliquot_tag': 'ALQ_cb3270e3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00848.RNA-Seq.genomic.T.hg38 C3N-00848 UCEC RNA-Seq tumor CPT0024130006 a854785d-221b-4e79-b862-141a2cbcf6af.rna_seq.genomic.gdc_realn.bam 9212739487 BAM genomic harmonized CPTAC3 2772baef-9d04-4cf6-be5c-f61963c1b314 1855955feb321e78eac4f5ff363ddfa5 { 'aliquot_tag': 'ALQ_cb3270e3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00848.RNA-Seq.R1_L001.T C3N-00848 UCEC RNA-Seq tumor CPT0024130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTGGCC_S3_L001_R1_001.fastq.gz 4443710715 FASTQ R1_L001 unaligned CPTAC3 6e88806d-df9b-40b0-9ab9-d5f5265ef294 8b02ff193595023341e4336fef4afc9a { 'aliquot_tag': 'ALQ_cb3270e3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00848.RNA-Seq.R2_L001.T C3N-00848 UCEC RNA-Seq tumor CPT0024130006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTGGCC_S3_L001_R2_001.fastq.gz 4909078498 FASTQ R2_L001 unaligned CPTAC3 b8f22b8f-204c-48b4-8147-5c9caf3c2f76 305c3bf3d0ee1b366524ef93b8615b27 { 'aliquot_tag': 'ALQ_cb3270e3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-00848.RNA-Seq.transcriptome.T.hg38 C3N-00848 UCEC RNA-Seq tumor CPT0024130006 a854785d-221b-4e79-b862-141a2cbcf6af.rna_seq.transcriptome.gdc_realn.bam 11461735095 BAM transcriptome harmonized CPTAC3 037844f4-123a-4a6b-ab1a-41c75e422859 85ba798d1928bc645b2e7fd032ddbc4c { 'aliquot_tag': 'ALQ_cb3270e3', 'gdc_sample_type': 'Primary Tumor' } C3N-00848.WGS.N C3N-00848 UCEC WGS blood_normal CPT0024210002 CPT0024210002.WholeGenome.RP-1303.bam 63242209005 BAM aligned CPTAC3 4c207c78-414e-4af7-8d38-907c63b4422d 6e87904bca3b7759a2819486e9273536 { 'aliquot_tag': 'ALQ_300b9534', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00848.WGS.N.hg38 C3N-00848 UCEC WGS blood_normal CPT0024210002 1d98bc15-ba29-4594-bc9d-504e70515a19_gdc_realn.bam 92591371345 BAM harmonized CPTAC3 fa7446b0-a818-4096-941d-746e73d363fa 531602828a5dc1d3af8da49bb93d2443 { 'aliquot_tag': 'ALQ_300b9534', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22892,9 +24749,9 @@ C3N-00850.MethArray.Red.T C3N-00850 UCEC Methylation Array tumor CPT0027810009 2 C3N-00850.miRNA-Seq.T C3N-00850 UCEC miRNA-Seq tumor CPT0027810006 181012_UNC32-K00270_0124_AH223CBBXY_TTAGGC_S24_L004_R1_001.unaln.bam 209131732 BAM unaligned CPTAC3 4b56f1c4-c8c4-41c3-92ae-0e32a05c4a82 94adaa2d348e5d8963d9cde661c775e1 { 'aliquot_tag': 'ALQ_a71568d6', 'gdc_sample_type': 'Primary Tumor' } C3N-00850.miRNA-Seq.T.hg38 C3N-00850 UCEC miRNA-Seq tumor CPT0027810006 c78e5127-7ed8-48e1-97e0-fd8a3c8256fe_mirnaseq_gdc_realn.bam 229747083 BAM harmonized CPTAC3 704912f3-cb62-43db-bf19-279bc4af5ec4 22f6c3fef4a5b588bef57c9e2f85899b { 'aliquot_tag': 'ALQ_a71568d6', 'gdc_sample_type': 'Primary Tumor' } C3N-00850.RNA-Seq.chimeric.T.hg38 C3N-00850 UCEC RNA-Seq tumor CPT0027810006 1ddf96e5-b322-4c76-ab30-708d73866976.rna_seq.chimeric.gdc_realn.bam 55243852 BAM chimeric harmonized CPTAC3 d698c030-ff5a-4f2f-a7c2-92154c2584f6 95e681f2786b548d0120fb2e82055d4f { 'aliquot_tag': 'ALQ_a71568d6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00850.RNA-Seq.genomic.T.hg38 C3N-00850 UCEC RNA-Seq tumor CPT0027810006 1ddf96e5-b322-4c76-ab30-708d73866976.rna_seq.genomic.gdc_realn.bam 5472842284 BAM genomic harmonized CPTAC3 64fae48e-3aa8-48a8-a597-0b2428a15a02 6d1a0252713c5fd1fa0516bb1c724811 { 'aliquot_tag': 'ALQ_a71568d6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00850.RNA-Seq.R1_L005.T C3N-00850 UCEC RNA-Seq tumor CPT0027810006 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 2564751211 FASTQ R1_L005 unaligned CPTAC3 232956d9-bea5-47c0-8fcb-bfbbb8bab7e5 9702089156b6050f5bb69c0952b14295 { 'aliquot_tag': 'ALQ_a71568d6', 'gdc_sample_type': 'Primary Tumor' } -C3N-00850.RNA-Seq.R2_L005.T C3N-00850 UCEC RNA-Seq tumor CPT0027810006 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 2785220153 FASTQ R2_L005 unaligned CPTAC3 23941127-4227-4b4a-82ea-f76fe7062763 f2b25805402c3ce65e4987675b0873dd { 'aliquot_tag': 'ALQ_a71568d6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00850.RNA-Seq.genomic.T.hg38 C3N-00850 UCEC RNA-Seq tumor CPT0027810006 1ddf96e5-b322-4c76-ab30-708d73866976.rna_seq.genomic.gdc_realn.bam 5472842284 BAM genomic harmonized CPTAC3 527ed783-4101-4c41-8e60-873f69a88013 6d1a0252713c5fd1fa0516bb1c724811 { 'aliquot_tag': 'ALQ_a71568d6', 'gdc_sample_type': 'Primary Tumor' } +C3N-00850.RNA-Seq.R1_L005.T C3N-00850 UCEC RNA-Seq tumor CPT0027810006 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTTCC_S19_L005_R1_001.fastq.gz 2564751211 FASTQ R1_L005 unaligned CPTAC3 232956d9-bea5-47c0-8fcb-bfbbb8bab7e5 9702089156b6050f5bb69c0952b14295 { 'aliquot_tag': 'ALQ_a71568d6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00850.RNA-Seq.R2_L005.T C3N-00850 UCEC RNA-Seq tumor CPT0027810006 170912_UNC31-K00269_0081_AHL3YKBBXX_AGTTCC_S19_L005_R2_001.fastq.gz 2785220153 FASTQ R2_L005 unaligned CPTAC3 23941127-4227-4b4a-82ea-f76fe7062763 f2b25805402c3ce65e4987675b0873dd { 'aliquot_tag': 'ALQ_a71568d6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-00850.RNA-Seq.transcriptome.T.hg38 C3N-00850 UCEC RNA-Seq tumor CPT0027810006 1ddf96e5-b322-4c76-ab30-708d73866976.rna_seq.transcriptome.gdc_realn.bam 5919795180 BAM transcriptome harmonized CPTAC3 44a7c05d-c869-43fb-aa39-e7f2642dfe1f 3f1a75585bfe6071f7c5677f01161c4b { 'aliquot_tag': 'ALQ_a71568d6', 'gdc_sample_type': 'Primary Tumor' } C3N-00850.WGS.N C3N-00850 UCEC WGS blood_normal CPT0027890002 CPT0027890002.WholeGenome.RP-1303.bam 63768086170 BAM aligned CPTAC3 ee62a659-d8fa-4706-9ba9-9ec933ed8b24 b47b36e690c6f9800278a24bc2dc6720 { 'aliquot_tag': 'ALQ_9008e70e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00850.WGS.N.hg38 C3N-00850 UCEC WGS blood_normal CPT0027890002 9872eab8-63d3-4882-877b-7b4de75bba37_gdc_realn.bam 93059377849 BAM harmonized CPTAC3 ac12d7d2-d6d3-454b-aa22-827c6b7a49a9 fd1b7b8faff6edba45af98316f1141b1 { 'aliquot_tag': 'ALQ_9008e70e', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22913,9 +24770,9 @@ C3N-00852.DUP_470140a3.WXS.T.hg38 C3N-00852 CCRCC WXS tumor CPT0024650012 e57af3 C3N-00852.DUP_8e68d2ba.miRNA-Seq.T C3N-00852 CCRCC miRNA-Seq tumor CPT0024660009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTTTCG_S34_L005_R1_001.unaln.bam 373067205 BAM unaligned CPTAC3 f4ab2c44-6466-4337-b394-e1d16a491b08 82675aa511b44b507d1ca7d4d1839e21 { 'aliquot_tag': 'DUP_8e68d2ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00852.DUP_8e68d2ba.miRNA-Seq.T.hg38 C3N-00852 CCRCC miRNA-Seq tumor CPT0024660009 9afc23a1-f750-45df-ab69-9a115b50bd1c_mirnaseq_gdc_realn.bam 404654753 BAM harmonized CPTAC3 3ac59a6d-899d-450c-aff6-d34e727cee6e 6e806cf37e60b6767d643809e7d3b007 { 'aliquot_tag': 'DUP_8e68d2ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00852.DUP_8e68d2ba.RNA-Seq.chimeric.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 7f6666a2-3ccb-42b4-b7b2-c74a2a878022.rna_seq.chimeric.gdc_realn.bam 301857247 BAM chimeric harmonized CPTAC3 38f41fbb-d91f-482a-adb1-09f7b9229b85 a3d9d5aeac256fb89df858affe24a48d { 'aliquot_tag': 'DUP_8e68d2ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00852.DUP_8e68d2ba.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 7f6666a2-3ccb-42b4-b7b2-c74a2a878022.rna_seq.genomic.gdc_realn.bam 8660389876 BAM genomic harmonized CPTAC3 606db051-dec8-4494-96a1-4da940c40632 ffee41b780f66af954ec6879e181c910 { 'aliquot_tag': 'DUP_8e68d2ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00852.DUP_8e68d2ba.RNA-Seq.R1_L001.T C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTACCTT-AAGACGTC_S4_L001_R1_001.fastq.gz 4104002160 FASTQ R1_L001 unaligned CPTAC3 d5c8ee92-cf50-456f-aa96-2ef73b985bfe 8a3ff5e4719aa9a377422efbcba49a26 { 'aliquot_tag': 'DUP_8e68d2ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00852.DUP_8e68d2ba.RNA-Seq.R2_L001.T C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTACCTT-AAGACGTC_S4_L001_R2_001.fastq.gz 4969739181 FASTQ R2_L001 unaligned CPTAC3 12ecd8ec-5fc6-46ac-b79e-9b1e3918d8a0 bea9e64e89c995875e6d13e7fd4aba0d { 'aliquot_tag': 'DUP_8e68d2ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00852.DUP_8e68d2ba.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 7f6666a2-3ccb-42b4-b7b2-c74a2a878022.rna_seq.genomic.gdc_realn.bam 8660389876 BAM genomic harmonized CPTAC3 1cd48568-bdea-4d81-a3a2-74ac1cb167b5 ffee41b780f66af954ec6879e181c910 { 'aliquot_tag': 'DUP_8e68d2ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00852.DUP_8e68d2ba.RNA-Seq.R1_L001.T C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTACCTT-AAGACGTC_S4_L001_R1_001.fastq.gz 4104002160 FASTQ R1_L001 unaligned CPTAC3 d5c8ee92-cf50-456f-aa96-2ef73b985bfe 8a3ff5e4719aa9a377422efbcba49a26 { 'aliquot_tag': 'DUP_8e68d2ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3N-00852.DUP_8e68d2ba.RNA-Seq.R2_L001.T C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 200519_UNC31-K00269_0279_AHH5VTBBXY_GGTACCTT-AAGACGTC_S4_L001_R2_001.fastq.gz 4969739181 FASTQ R2_L001 unaligned CPTAC3 12ecd8ec-5fc6-46ac-b79e-9b1e3918d8a0 bea9e64e89c995875e6d13e7fd4aba0d { 'aliquot_tag': 'DUP_8e68d2ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3N-00852.DUP_8e68d2ba.RNA-Seq.transcriptome.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024660009 7f6666a2-3ccb-42b4-b7b2-c74a2a878022.rna_seq.transcriptome.gdc_realn.bam 11698579712 BAM transcriptome harmonized CPTAC3 f4a172d6-889e-4327-9ede-941200db6871 058094644ce041b02ff3a517c1a8c47b { 'aliquot_tag': 'DUP_8e68d2ba', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00852.DUP_a13a73.MethArray.Green.T C3N-00852 CCRCC Methylation Array tumor CPT0024660012 204372030071_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 cc503702-9b12-481f-909e-43c448745025 416a2791847affd1b37154b70952c4cf { 'aliquot_tag': 'DUP_a13a73', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00852.DUP_a13a73.MethArray.Red.T C3N-00852 CCRCC Methylation Array tumor CPT0024660012 204372030071_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 43a39ed0-5b25-4b17-905e-e2a0fe895455 516afded624fe5652b65693a2632b506 { 'aliquot_tag': 'DUP_a13a73', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -22926,9 +24783,9 @@ C3N-00852.DUP_a13a73.WXS.T.hg38 C3N-00852 CCRCC WXS tumor CPT0024660012 00d1ca04 C3N-00852.DUP_c9c8a86a.miRNA-Seq.T C3N-00852 CCRCC miRNA-Seq tumor CPT0024650009 200526_UNC32-K00270_0248_BHH7WFBBXY_GTGGCC_S33_L005_R1_001.unaln.bam 242478790 BAM unaligned CPTAC3 a564cb2a-9ce1-4773-98cc-ded738f05ba3 cf2c496ff9753f5852aef3f68db9bf03 { 'aliquot_tag': 'DUP_c9c8a86a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00852.DUP_c9c8a86a.miRNA-Seq.T.hg38 C3N-00852 CCRCC miRNA-Seq tumor CPT0024650009 a20a79b2-4125-4f51-a9fc-f0192d6f913b_mirnaseq_gdc_realn.bam 265851027 BAM harmonized CPTAC3 a1f10df5-6c34-4b87-9717-9a91f3b20de7 d2e71bb55c3a2060ad49421e958a5eb1 { 'aliquot_tag': 'DUP_c9c8a86a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00852.DUP_c9c8a86a.RNA-Seq.chimeric.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 98e4aa31-8aab-437c-b6d8-433100a0092b.rna_seq.chimeric.gdc_realn.bam 190263159 BAM chimeric harmonized CPTAC3 9ef10366-b8e7-42cf-a41b-210dc1b7f025 65f8fb9db7aac43b7a7d70b1d995fd03 { 'aliquot_tag': 'DUP_c9c8a86a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00852.DUP_c9c8a86a.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 98e4aa31-8aab-437c-b6d8-433100a0092b.rna_seq.genomic.gdc_realn.bam 8506548884 BAM genomic harmonized CPTAC3 c899874c-77aa-43f6-8dff-9b46b418127e 83d2aae3a6c5d118bad57d99f54cdf1c { 'aliquot_tag': 'DUP_c9c8a86a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00852.DUP_c9c8a86a.RNA-Seq.R1_L008.T C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 200518_UNC32-K00270_0247_AHH573BBXY_GCACGGAC-GTCTCGCA_S45_L008_R1_001.fastq.gz 3984452183 FASTQ R1_L008 unaligned CPTAC3 5d01f7ba-95a5-4f59-a2bd-35bd9eac516d 89877a623d63dae7d9e168c4c32327a8 { 'aliquot_tag': 'DUP_c9c8a86a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00852.DUP_c9c8a86a.RNA-Seq.R2_L008.T C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 200518_UNC32-K00270_0247_AHH573BBXY_GCACGGAC-GTCTCGCA_S45_L008_R2_001.fastq.gz 4761749129 FASTQ R2_L008 unaligned CPTAC3 17c99bea-d5f7-4049-8890-9ead17cddf4f f5cdc874090034b1241817712759bb40 { 'aliquot_tag': 'DUP_c9c8a86a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00852.DUP_c9c8a86a.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 98e4aa31-8aab-437c-b6d8-433100a0092b.rna_seq.genomic.gdc_realn.bam 8506548884 BAM genomic harmonized CPTAC3 6b951d1b-2f84-4a7b-937b-d16235dbe2d0 83d2aae3a6c5d118bad57d99f54cdf1c { 'aliquot_tag': 'DUP_c9c8a86a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00852.DUP_c9c8a86a.RNA-Seq.R1_L008.T C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 200518_UNC32-K00270_0247_AHH573BBXY_GCACGGAC-GTCTCGCA_S45_L008_R1_001.fastq.gz 3984452183 FASTQ R1_L008 unaligned CPTAC3 5d01f7ba-95a5-4f59-a2bd-35bd9eac516d 89877a623d63dae7d9e168c4c32327a8 { 'aliquot_tag': 'DUP_c9c8a86a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L008' } +C3N-00852.DUP_c9c8a86a.RNA-Seq.R2_L008.T C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 200518_UNC32-K00270_0247_AHH573BBXY_GCACGGAC-GTCTCGCA_S45_L008_R2_001.fastq.gz 4761749129 FASTQ R2_L008 unaligned CPTAC3 17c99bea-d5f7-4049-8890-9ead17cddf4f f5cdc874090034b1241817712759bb40 { 'aliquot_tag': 'DUP_c9c8a86a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L008' } C3N-00852.DUP_c9c8a86a.RNA-Seq.transcriptome.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024650009 98e4aa31-8aab-437c-b6d8-433100a0092b.rna_seq.transcriptome.gdc_realn.bam 11400714918 BAM transcriptome harmonized CPTAC3 d8666eae-343c-42b3-990c-b7f3e93a4e4f ee3dfb6b37bd7ed7a69ef6e81c7f718e { 'aliquot_tag': 'DUP_c9c8a86a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00852.MethArray.Green.A C3N-00852 CCRCC Methylation Array tissue_normal CPT0024680009 203027380024_R01C01_Grn.idat 13676241 IDAT Green NA CPTAC3 c455d9b4-e27f-430d-953e-ab94527dea9a c0d286fab3cb90b3aef856f81a9f5efa { 'aliquot_tag': 'ALQ_31586cdb', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00852.MethArray.Green.T C3N-00852 CCRCC Methylation Array tumor CPT0024670009 202176290147_R01C01_Grn.idat 13676215 IDAT Green NA CPTAC3 debb3bd8-aca6-411a-a4b8-c07a3d8c1526 8f6923a43a15b2d283f452d8700dc460 { 'aliquot_tag': 'ALQ_b308fb0a', 'gdc_sample_type': 'Primary Tumor' } @@ -22940,12 +24797,12 @@ C3N-00852.miRNA-Seq.T C3N-00852 CCRCC miRNA-Seq tumor CPT0024670006 180924_UNC31 C3N-00852.miRNA-Seq.T.hg38 C3N-00852 CCRCC miRNA-Seq tumor CPT0024670006 0567a339-a1ec-4a7e-a245-8574a9091cc1_mirnaseq_gdc_realn.bam 230942340 BAM harmonized CPTAC3 0f79ee27-e217-42bf-9b65-98a0a25f6f3f 24e0df55f364897ab376c6111fbb3011 { 'aliquot_tag': 'ALQ_23b7e69b', 'gdc_sample_type': 'Primary Tumor' } C3N-00852.RNA-Seq.chimeric.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 5e3ff0d4-a9c3-4c79-b003-1b0842e47c38.rna_seq.chimeric.gdc_realn.bam 111124618 BAM chimeric harmonized CPTAC3 69783ff6-50ca-4149-9ecf-5d2af8d2248d 131d9c725d52d066aa898c2f8fda85f4 { 'aliquot_tag': 'ALQ_c896b484', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00852.RNA-Seq.chimeric.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 46a26ecf-4fb4-44f9-a6a1-4ce8ef0b446d.rna_seq.chimeric.gdc_realn.bam 85179202 BAM chimeric harmonized CPTAC3 42ca7646-616f-48ed-88d2-f9c43e7b3798 1d901b87ff382964a212493d844b9388 { 'aliquot_tag': 'ALQ_23b7e69b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00852.RNA-Seq.genomic.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 5e3ff0d4-a9c3-4c79-b003-1b0842e47c38.rna_seq.genomic.gdc_realn.bam 9581281489 BAM genomic harmonized CPTAC3 ec6ab350-813a-4a04-9582-b23106dd6fe2 238b2b266d63f65abea11438e68a9015 { 'aliquot_tag': 'ALQ_c896b484', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00852.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 46a26ecf-4fb4-44f9-a6a1-4ce8ef0b446d.rna_seq.genomic.gdc_realn.bam 8555543802 BAM genomic harmonized CPTAC3 e5f8ee06-e10c-4d6b-9787-bc9522d1d9f1 aa3448dd5642e7d9ea0d6bde2371ca3a { 'aliquot_tag': 'ALQ_23b7e69b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00852.RNA-Seq.R1_L001.T C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 170912_UNC31-K00269_0081_AHL3YKBBXX_GAGTGG_S4_L001_R1_001.fastq.gz 4265437093 FASTQ R1_L001 unaligned CPTAC3 9f137d4e-815b-42a1-9cd9-e937abeebbab aa59da8caae7f02dcb0ff5cc1ed6cc30 { 'aliquot_tag': 'ALQ_23b7e69b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00852.RNA-Seq.R1_L008.A C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 180313_UNC32-K00270_0085_BHT2MGBBXX_GGCTAC_S40_L008_R1_001.fastq.gz 3923360468 FASTQ R1_L008 unaligned CPTAC3 98cbfe35-2028-4b35-b294-7908bd384217 dc5e746d8a140cd9d4533e5e31d48094 { 'aliquot_tag': 'ALQ_c896b484', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00852.RNA-Seq.R2_L001.T C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 170912_UNC31-K00269_0081_AHL3YKBBXX_GAGTGG_S4_L001_R2_001.fastq.gz 4657233704 FASTQ R2_L001 unaligned CPTAC3 14c88080-e7f7-4005-84a8-08b7c0bbdb1a 5300b7587d3686b62ec9a5256f3fc3a5 { 'aliquot_tag': 'ALQ_23b7e69b', 'gdc_sample_type': 'Primary Tumor' } -C3N-00852.RNA-Seq.R2_L008.A C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 180313_UNC32-K00270_0085_BHT2MGBBXX_GGCTAC_S40_L008_R2_001.fastq.gz 4438310010 FASTQ R2_L008 unaligned CPTAC3 3b929f29-a942-4894-8250-1f29c8bf68a2 826c76c31e7f58ea989f891f6f463ca9 { 'aliquot_tag': 'ALQ_c896b484', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00852.RNA-Seq.genomic.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 5e3ff0d4-a9c3-4c79-b003-1b0842e47c38.rna_seq.genomic.gdc_realn.bam 9581281489 BAM genomic harmonized CPTAC3 9cc62824-4b8a-4286-b721-d88c07093058 238b2b266d63f65abea11438e68a9015 { 'aliquot_tag': 'ALQ_c896b484', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00852.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 46a26ecf-4fb4-44f9-a6a1-4ce8ef0b446d.rna_seq.genomic.gdc_realn.bam 8555543802 BAM genomic harmonized CPTAC3 853f47ef-c22d-4d1a-ba52-dcb4abb6a602 aa3448dd5642e7d9ea0d6bde2371ca3a { 'aliquot_tag': 'ALQ_23b7e69b', 'gdc_sample_type': 'Primary Tumor' } +C3N-00852.RNA-Seq.R1_L001.T C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 170912_UNC31-K00269_0081_AHL3YKBBXX_GAGTGG_S4_L001_R1_001.fastq.gz 4265437093 FASTQ R1_L001 unaligned CPTAC3 9f137d4e-815b-42a1-9cd9-e937abeebbab aa59da8caae7f02dcb0ff5cc1ed6cc30 { 'aliquot_tag': 'ALQ_23b7e69b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00852.RNA-Seq.R1_L008.A C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 180313_UNC32-K00270_0085_BHT2MGBBXX_GGCTAC_S40_L008_R1_001.fastq.gz 3923360468 FASTQ R1_L008 unaligned CPTAC3 98cbfe35-2028-4b35-b294-7908bd384217 dc5e746d8a140cd9d4533e5e31d48094 { 'aliquot_tag': 'ALQ_c896b484', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00852.RNA-Seq.R2_L001.T C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 170912_UNC31-K00269_0081_AHL3YKBBXX_GAGTGG_S4_L001_R2_001.fastq.gz 4657233704 FASTQ R2_L001 unaligned CPTAC3 14c88080-e7f7-4005-84a8-08b7c0bbdb1a 5300b7587d3686b62ec9a5256f3fc3a5 { 'aliquot_tag': 'ALQ_23b7e69b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00852.RNA-Seq.R2_L008.A C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 180313_UNC32-K00270_0085_BHT2MGBBXX_GGCTAC_S40_L008_R2_001.fastq.gz 4438310010 FASTQ R2_L008 unaligned CPTAC3 3b929f29-a942-4894-8250-1f29c8bf68a2 826c76c31e7f58ea989f891f6f463ca9 { 'aliquot_tag': 'ALQ_c896b484', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00852.RNA-Seq.transcriptome.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal CPT0024680013 5e3ff0d4-a9c3-4c79-b003-1b0842e47c38.rna_seq.transcriptome.gdc_realn.bam 9088795037 BAM transcriptome harmonized CPTAC3 3f088125-75db-42e1-bd50-b6fe452d4948 f39538202afca9ec468df5bfd30110ed { 'aliquot_tag': 'ALQ_c896b484', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00852.RNA-Seq.transcriptome.T.hg38 C3N-00852 CCRCC RNA-Seq tumor CPT0024670006 46a26ecf-4fb4-44f9-a6a1-4ce8ef0b446d.rna_seq.transcriptome.gdc_realn.bam 12112016023 BAM transcriptome harmonized CPTAC3 a8dd08e7-599f-4f5b-aa3a-0f479a6e9b2e 52a483ad601539e6984be16242770831 { 'aliquot_tag': 'ALQ_23b7e69b', 'gdc_sample_type': 'Primary Tumor' } C3N-00852.WGS.A C3N-00852 CCRCC WGS tissue_normal CPT0024680009 CPT0024680009.WholeGenome.RP-1303.bam 82131149308 BAM aligned CPTAC3 e4e32496-13d3-4eef-88d0-f12b14dc1032 1807bed71baad904acb2cef1b5f9f8e1 { 'aliquot_tag': 'ALQ_31586cdb', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -22966,16 +24823,16 @@ C3N-00853.miRNA-Seq.A C3N-00853 SAR miRNA-Seq tissue_normal CPT0024300009 181119 C3N-00853.miRNA-Seq.A.hg38 C3N-00853 SAR miRNA-Seq tissue_normal CPT0024300009 6e7625c3-ba0f-465f-97ce-4ead2d6b759b_mirnaseq_gdc_realn.bam 388994117 BAM harmonized CPTAC3 1629fe6f-62cf-4aee-93c2-4455e88c4cb0 218ab696a5569ca34c94f02ac8a19ead { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00853.miRNA-Seq.T C3N-00853 SAR miRNA-Seq tumor CPT0024290006 180924_UNC31-K00269_0154_AHWTMLBBXX_CAGATC_S20_L003_R1_001.unaln.bam 370661315 BAM unaligned CPTAC3 79bcf1d6-ad95-4cc8-a71a-323deebba97e a4be7b6081a5e8509501c41a925239b2 { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor' } C3N-00853.miRNA-Seq.T.hg38 C3N-00853 SAR miRNA-Seq tumor CPT0024290006 d2b46876-fdf7-489d-8b85-8ac7fd5229b1_mirnaseq_gdc_realn.bam 413722003 BAM harmonized CPTAC3 9e65abfe-b328-4869-9f8c-2f4bf52b9d20 2661b85622b4de867b4d715578d4d9e8 { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor' } -C3N-00853.RNA-Seq.chimeric.A.hg38 C3N-00853 SAR RNA-Seq tissue_normal CPT0024300009 73182167-df18-4ec7-91ac-3ef75cc4bbf4.rna_seq.chimeric.gdc_realn.bam 28713314 BAM chimeric harmonized CPTAC3 a16c3803-6fad-490c-9cf5-399cca032061 f7037d6e2390e14103277580e836360d { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00853.RNA-Seq.chimeric.T.hg38 C3N-00853 SAR RNA-Seq tumor CPT0024290006 915d5ec2-4571-4e87-915c-adfe486311ff.rna_seq.chimeric.gdc_realn.bam 61649583 BAM chimeric harmonized CPTAC3 852665d4-c6d9-4275-b42c-f00d60802d42 7b5081ff943cd587975a9543f91a6db0 { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor' } -C3N-00853.RNA-Seq.genomic.A.hg38 C3N-00853 SAR RNA-Seq tissue_normal CPT0024300009 73182167-df18-4ec7-91ac-3ef75cc4bbf4.rna_seq.genomic.gdc_realn.bam 8334150402 BAM genomic harmonized CPTAC3 b60d5b67-425d-47be-9999-601a9e719412 26a25714d65189282daf45bd671fafc9 { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00853.RNA-Seq.genomic.T.hg38 C3N-00853 SAR RNA-Seq tumor CPT0024290006 915d5ec2-4571-4e87-915c-adfe486311ff.rna_seq.genomic.gdc_realn.bam 7799608401 BAM genomic harmonized CPTAC3 6858f126-52f5-47c1-9191-d0681084ef34 b07f9e1106f9c8f78737fa60b99d03c4 { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor' } -C3N-00853.RNA-Seq.R1_L001.T C3N-00853 SAR RNA-Seq tumor CPT0024290006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L001_R1_001.fastq.gz 3409204732 FASTQ R1_L001 unaligned CPTAC3 34c962ed-dd37-47f1-b45c-c83dcb7dcccc 9ada34800a0caae30f1646df81e034fa { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor' } -C3N-00853.RNA-Seq.R1_L005.A C3N-00853 SAR RNA-Seq tissue_normal CPT0024300009 180516_UNC31-K00269_0130_BHV22JBBXX_ATCACG_S19_L005_R1_001.fastq.gz 3651785702 FASTQ R1_L005 unaligned CPTAC3 45bbd054-c165-4a7e-bd8b-c537c2147298 6dc1258e5e36e9da0240fcb892f6e4be { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00853.RNA-Seq.R2_L001.T C3N-00853 SAR RNA-Seq tumor CPT0024290006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L001_R2_001.fastq.gz 3788505394 FASTQ R2_L001 unaligned CPTAC3 d8fba7b4-db7a-47d3-8acb-fc647043b70e 5316a9a782d4fee3239a25d382dba8c0 { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor' } -C3N-00853.RNA-Seq.R2_L005.A C3N-00853 SAR RNA-Seq tissue_normal CPT0024300009 180516_UNC31-K00269_0130_BHV22JBBXX_ATCACG_S19_L005_R2_001.fastq.gz 3599638532 FASTQ R2_L005 unaligned CPTAC3 db98065f-0d22-4a4a-9017-673936fba628 6e22829ac72ce361145f7bba628ff981 { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00853.RNA-Seq.transcriptome.A.hg38 C3N-00853 SAR RNA-Seq tissue_normal CPT0024300009 73182167-df18-4ec7-91ac-3ef75cc4bbf4.rna_seq.transcriptome.gdc_realn.bam 9345879579 BAM transcriptome harmonized CPTAC3 0a3c153e-3bab-4614-acb4-73741203605e 0123a4034ed60c6bcd6c1730016b23c8 { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00853.RNA-Seq.transcriptome.T.hg38 C3N-00853 SAR RNA-Seq tumor CPT0024290006 915d5ec2-4571-4e87-915c-adfe486311ff.rna_seq.transcriptome.gdc_realn.bam 6982691665 BAM transcriptome harmonized CPTAC3 dab9ec76-4c07-476e-84ed-4946e1dba1b0 3a2c0894919c639c010ed7807c8a0df5 { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor' } +C3N-00853.RNA-Seq.chimeric.A.hg38 C3N-00853 SAR RNA-Seq tissue_normal CPT0024300009 8c477064-2a07-48cb-a2f0-b43669db6303.rna_seq.chimeric.gdc_realn.bam 28695400 BAM chimeric harmonized CPTAC3 f49090d2-6c73-4538-ba86-56bcba5f5f30 420ff5561d2e7c241ef77d00144abd14 { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00853.RNA-Seq.chimeric.T.hg38 C3N-00853 SAR RNA-Seq tumor CPT0024290006 f5c8ae58-501b-4096-b03b-fdb280755767.rna_seq.chimeric.gdc_realn.bam 61628986 BAM chimeric harmonized CPTAC3 73d1db42-9669-4718-a741-4a733bec7695 d09b0a35fdb4e552afede980f0888223 { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor' } +C3N-00853.RNA-Seq.genomic.A.hg38 C3N-00853 SAR RNA-Seq tissue_normal CPT0024300009 8c477064-2a07-48cb-a2f0-b43669db6303.rna_seq.genomic.gdc_realn.bam 8333781448 BAM genomic harmonized CPTAC3 6790dedb-7cec-4f0b-8009-0af0d8df0a57 e42515ff7505d5929a3992c52ae1043d { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00853.RNA-Seq.genomic.T.hg38 C3N-00853 SAR RNA-Seq tumor CPT0024290006 f5c8ae58-501b-4096-b03b-fdb280755767.rna_seq.genomic.gdc_realn.bam 7800233638 BAM genomic harmonized CPTAC3 733321ba-31dc-4c45-a858-e049fe89eb30 0273da63857f021d0fb47914d3566a00 { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor' } +C3N-00853.RNA-Seq.R1_L001.T C3N-00853 SAR RNA-Seq tumor CPT0024290006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L001_R1_001.fastq.gz 3409204732 FASTQ R1_L001 unaligned CPTAC3 34c962ed-dd37-47f1-b45c-c83dcb7dcccc 9ada34800a0caae30f1646df81e034fa { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00853.RNA-Seq.R1_L005.A C3N-00853 SAR RNA-Seq tissue_normal CPT0024300009 180516_UNC31-K00269_0130_BHV22JBBXX_ATCACG_S19_L005_R1_001.fastq.gz 3651785702 FASTQ R1_L005 unaligned CPTAC3 45bbd054-c165-4a7e-bd8b-c537c2147298 6dc1258e5e36e9da0240fcb892f6e4be { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00853.RNA-Seq.R2_L001.T C3N-00853 SAR RNA-Seq tumor CPT0024290006 170912_UNC31-K00269_0081_AHL3YKBBXX_GTTTCG_S2_L001_R2_001.fastq.gz 3788505394 FASTQ R2_L001 unaligned CPTAC3 d8fba7b4-db7a-47d3-8acb-fc647043b70e 5316a9a782d4fee3239a25d382dba8c0 { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00853.RNA-Seq.R2_L005.A C3N-00853 SAR RNA-Seq tissue_normal CPT0024300009 180516_UNC31-K00269_0130_BHV22JBBXX_ATCACG_S19_L005_R2_001.fastq.gz 3599638532 FASTQ R2_L005 unaligned CPTAC3 db98065f-0d22-4a4a-9017-673936fba628 6e22829ac72ce361145f7bba628ff981 { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-00853.RNA-Seq.transcriptome.A.hg38 C3N-00853 SAR RNA-Seq tissue_normal CPT0024300009 8c477064-2a07-48cb-a2f0-b43669db6303.rna_seq.transcriptome.gdc_realn.bam 10600798799 BAM transcriptome harmonized CPTAC3 b5063f57-aea7-4a97-b349-b58d7c2994fa bc28ecd274eb97d501380bb62a35861a { 'aliquot_tag': 'ALQ_51e5b6a9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00853.RNA-Seq.transcriptome.T.hg38 C3N-00853 SAR RNA-Seq tumor CPT0024290006 f5c8ae58-501b-4096-b03b-fdb280755767.rna_seq.transcriptome.gdc_realn.bam 7990409461 BAM transcriptome harmonized CPTAC3 b33b9937-90a4-45b6-8da8-2cf619429301 cbafed2972210e4650160c786a00a5bc { 'aliquot_tag': 'ALQ_7161aec', 'gdc_sample_type': 'Primary Tumor' } C3N-00853.WGS.A C3N-00853 SAR WGS tissue_normal CPT0024300006 CPT0024300006.WholeGenome.RP-1303.bam 54433030711 BAM aligned CPTAC3 0b4aa10e-91a0-44b1-975e-93d4d7498b51 cd3457bf611d56ee0ca45cbc0dcf73c6 { 'aliquot_tag': 'ALQ_c15aab38', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00853.WGS.A.hg38 C3N-00853 SAR WGS tissue_normal CPT0024300006 bbd95734-ddf0-43d6-a3b0-fa064fe35e28_wgs_gdc_realn.bam 77936009116 BAM harmonized CPTAC3 3e881874-13cf-4584-b576-4b07df10aabd 92da21b7b99f2318454c0b5b92e62bcc { 'aliquot_tag': 'ALQ_c15aab38', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00853.WGS.N C3N-00853 SAR WGS blood_normal CPT0024360002 CPT0024360002.WholeGenome.RP-1303.bam 79456257458 BAM aligned CPTAC3 c0797ed3-d8cc-44f5-9e11-479a2265f10e b5cd5f81217ba1239f6051016f6ccebe { 'aliquot_tag': 'ALQ_49779a81', 'gdc_sample_type': 'Blood Derived Normal' } @@ -22994,16 +24851,16 @@ C3N-00855.miRNA-Seq.A C3N-00855 SAR miRNA-Seq tissue_normal CPT0024450015 181108 C3N-00855.miRNA-Seq.A.hg38 C3N-00855 SAR miRNA-Seq tissue_normal CPT0024450015 871fa9d8-2213-4706-a698-5df97e295090_mirnaseq_gdc_realn.bam 253396823 BAM harmonized CPTAC3 db56edd8-8dcf-4765-8eaf-ad883d7af087 d8956372d61cbd6cf3f25ec414cfb8f3 { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00855.miRNA-Seq.T C3N-00855 SAR miRNA-Seq tumor CPT0024430006 180924_UNC31-K00269_0154_AHWTMLBBXX_ACTTGA_S44_L003_R1_001.unaln.bam 288289617 BAM unaligned CPTAC3 de0c7172-c3e5-49a5-babf-9c56d613da43 0272990271a6fbf6b49d689e58fda911 { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor' } C3N-00855.miRNA-Seq.T.hg38 C3N-00855 SAR miRNA-Seq tumor CPT0024430006 2797e909-ed54-49bf-a88e-c873e9c88ada_mirnaseq_gdc_realn.bam 316820176 BAM harmonized CPTAC3 5119708f-36de-42d1-b0f8-10fc2d2246b2 4ec20d6c585ee2af37a34ba223af127d { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor' } -C3N-00855.RNA-Seq.chimeric.A.hg38 C3N-00855 SAR RNA-Seq tissue_normal CPT0024450015 10b34660-3aea-41d3-bad2-831e4450939b.rna_seq.chimeric.gdc_realn.bam 122070960 BAM chimeric harmonized CPTAC3 5a748df6-a12a-44dd-889e-8ee4ca3dafde 74cd334c159545cc33b703640e77a058 { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00855.RNA-Seq.chimeric.T.hg38 C3N-00855 SAR RNA-Seq tumor CPT0024430006 abfaf0ae-d83a-4faa-8af0-97d57881abc1.rna_seq.chimeric.gdc_realn.bam 67892847 BAM chimeric harmonized CPTAC3 4162c1f4-28f1-4b48-9372-2a943337c90d a617782bc658cb5bd4911469ba88986f { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor' } -C3N-00855.RNA-Seq.genomic.A.hg38 C3N-00855 SAR RNA-Seq tissue_normal CPT0024450015 10b34660-3aea-41d3-bad2-831e4450939b.rna_seq.genomic.gdc_realn.bam 9026550716 BAM genomic harmonized CPTAC3 bfb39c34-aa29-43f5-89ee-64708873b8fa 870f1079dea3ec29fa59fb6863436ecd { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00855.RNA-Seq.genomic.T.hg38 C3N-00855 SAR RNA-Seq tumor CPT0024430006 abfaf0ae-d83a-4faa-8af0-97d57881abc1.rna_seq.genomic.gdc_realn.bam 7994943117 BAM genomic harmonized CPTAC3 5d6139a8-715b-48d7-9010-64cb41bb5496 0af916688e575cf08b233ecd41e80cb5 { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor' } -C3N-00855.RNA-Seq.R1_L001.T C3N-00855 SAR RNA-Seq tumor CPT0024430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L001_R1_001.fastq.gz 3760239866 FASTQ R1_L001 unaligned CPTAC3 26bb3b4f-49d3-4cec-8418-9ee23f87d17e b2a6d22c6762990a9274198b8b433916 { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor' } -C3N-00855.RNA-Seq.R1_L008.A C3N-00855 SAR RNA-Seq tissue_normal CPT0024450015 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L008_R1_001.fastq.gz 4279203833 FASTQ R1_L008 unaligned CPTAC3 f0b35299-07bd-4045-b0c6-488637b307e6 72e2625e6cf72cddb04c44e7331daa00 { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00855.RNA-Seq.R2_L001.T C3N-00855 SAR RNA-Seq tumor CPT0024430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L001_R2_001.fastq.gz 4167559250 FASTQ R2_L001 unaligned CPTAC3 197ad2cb-078d-4fd1-a18b-9947657cee93 b5f071e8df473f0f51446b3ad0a2d98b { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor' } -C3N-00855.RNA-Seq.R2_L008.A C3N-00855 SAR RNA-Seq tissue_normal CPT0024450015 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L008_R2_001.fastq.gz 4321030253 FASTQ R2_L008 unaligned CPTAC3 13c0600c-0769-432c-a34d-f6809ab9e6c6 69c4f18e86638472fd8ebdad85359d27 { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00855.RNA-Seq.transcriptome.A.hg38 C3N-00855 SAR RNA-Seq tissue_normal CPT0024450015 10b34660-3aea-41d3-bad2-831e4450939b.rna_seq.transcriptome.gdc_realn.bam 12642710599 BAM transcriptome harmonized CPTAC3 7350bb3c-d662-4ae3-bc59-5770b5dffc89 9d593963ec41f3dfc634b1fa8354de15 { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00855.RNA-Seq.transcriptome.T.hg38 C3N-00855 SAR RNA-Seq tumor CPT0024430006 abfaf0ae-d83a-4faa-8af0-97d57881abc1.rna_seq.transcriptome.gdc_realn.bam 8522576670 BAM transcriptome harmonized CPTAC3 41a0f91d-2a74-4915-af19-197c4e77d3d3 cb823a4c1ba61c549ced76d3206cb7bf { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor' } +C3N-00855.RNA-Seq.chimeric.A.hg38 C3N-00855 SAR RNA-Seq tissue_normal CPT0024450015 7c2df2d4-70d8-4365-984e-5b49631da6d1.rna_seq.chimeric.gdc_realn.bam 122030360 BAM chimeric harmonized CPTAC3 5dbd946c-ad0f-4f5f-8dc7-5ea1f9e64710 0c5bd4d3a4df070c5deafb434a008210 { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00855.RNA-Seq.chimeric.T.hg38 C3N-00855 SAR RNA-Seq tumor CPT0024430006 f09378c8-9ab6-4ae6-8f42-6d38158769de.rna_seq.chimeric.gdc_realn.bam 67882934 BAM chimeric harmonized CPTAC3 cc95616c-3fec-4111-a757-6d25d1afd654 d21feb2ee48085d191ed4814b7b99971 { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor' } +C3N-00855.RNA-Seq.genomic.A.hg38 C3N-00855 SAR RNA-Seq tissue_normal CPT0024450015 7c2df2d4-70d8-4365-984e-5b49631da6d1.rna_seq.genomic.gdc_realn.bam 9027972846 BAM genomic harmonized CPTAC3 2dc9ef95-7f6a-47ff-b214-5dbed63ce066 8659cee7926bd3e5f8de27810c5a8e63 { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00855.RNA-Seq.genomic.T.hg38 C3N-00855 SAR RNA-Seq tumor CPT0024430006 f09378c8-9ab6-4ae6-8f42-6d38158769de.rna_seq.genomic.gdc_realn.bam 7995452941 BAM genomic harmonized CPTAC3 661f7806-43a9-45cf-a278-2ff0018a982a 333c36c55f9f12bfd081e8d440a61210 { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor' } +C3N-00855.RNA-Seq.R1_L001.T C3N-00855 SAR RNA-Seq tumor CPT0024430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L001_R1_001.fastq.gz 3760239866 FASTQ R1_L001 unaligned CPTAC3 26bb3b4f-49d3-4cec-8418-9ee23f87d17e b2a6d22c6762990a9274198b8b433916 { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-00855.RNA-Seq.R1_L008.A C3N-00855 SAR RNA-Seq tissue_normal CPT0024450015 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L008_R1_001.fastq.gz 4279203833 FASTQ R1_L008 unaligned CPTAC3 f0b35299-07bd-4045-b0c6-488637b307e6 72e2625e6cf72cddb04c44e7331daa00 { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00855.RNA-Seq.R2_L001.T C3N-00855 SAR RNA-Seq tumor CPT0024430006 170912_UNC31-K00269_0081_AHL3YKBBXX_CGTACG_S1_L001_R2_001.fastq.gz 4167559250 FASTQ R2_L001 unaligned CPTAC3 197ad2cb-078d-4fd1-a18b-9947657cee93 b5f071e8df473f0f51446b3ad0a2d98b { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-00855.RNA-Seq.R2_L008.A C3N-00855 SAR RNA-Seq tissue_normal CPT0024450015 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L008_R2_001.fastq.gz 4321030253 FASTQ R2_L008 unaligned CPTAC3 13c0600c-0769-432c-a34d-f6809ab9e6c6 69c4f18e86638472fd8ebdad85359d27 { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00855.RNA-Seq.transcriptome.A.hg38 C3N-00855 SAR RNA-Seq tissue_normal CPT0024450015 7c2df2d4-70d8-4365-984e-5b49631da6d1.rna_seq.transcriptome.gdc_realn.bam 13639885590 BAM transcriptome harmonized CPTAC3 62cae139-766e-4bc5-85e4-2b5b3ef344c9 384a356cab8d5d3a009e0f983237fc05 { 'aliquot_tag': 'ALQ_94ad740b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00855.RNA-Seq.transcriptome.T.hg38 C3N-00855 SAR RNA-Seq tumor CPT0024430006 f09378c8-9ab6-4ae6-8f42-6d38158769de.rna_seq.transcriptome.gdc_realn.bam 9769797529 BAM transcriptome harmonized CPTAC3 42f50b41-b887-4958-8362-b3fa151aeee8 df0d31d5a1c0743a57337c7dff330c09 { 'aliquot_tag': 'ALQ_9bffe150', 'gdc_sample_type': 'Primary Tumor' } C3N-00855.WGS.A C3N-00855 SAR WGS tissue_normal CPT0024450006 CPT0024450006.WholeGenome.RP-1303.bam 59008656651 BAM aligned CPTAC3 e71b9318-4511-478d-ac47-a8ea8ecef3e5 5ecda6bf041a38879a667db104abe049 { 'aliquot_tag': 'ALQ_14bf14f0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00855.WGS.A.hg38 C3N-00855 SAR WGS tissue_normal CPT0024450006 d12046d1-a74c-42b6-beb2-2febca2139f7_wgs_gdc_realn.bam 85515647313 BAM harmonized CPTAC3 f11a2f61-a297-4fe6-a353-64e10e74d652 e2e157d3e80b46f401d2434be6e96cdb { 'aliquot_tag': 'ALQ_14bf14f0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00855.WGS.N C3N-00855 SAR WGS blood_normal CPT0024510002 CPT0024510002.WholeGenome.RP-1303.bam 79057854142 BAM aligned CPTAC3 24920136-ae87-4c02-b5e9-1d1a1eb910bd 8c8b3d21bdf42475bc451730b8562cd7 { 'aliquot_tag': 'ALQ_2d0ea58c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23022,8 +24879,8 @@ C3N-00857.miRNA-Seq.T C3N-00857 HNSCC miRNA-Seq tumor CPT0094350007 180828_UNC32 C3N-00857.miRNA-Seq.T.hg38 C3N-00857 HNSCC miRNA-Seq tumor CPT0094350007 c44d7d46-e227-468a-9b5b-30887ba7a6ad_mirnaseq_gdc_realn.bam 237951024 BAM harmonized CPTAC3 e9ea7136-543b-44dd-9765-d2deb6561878 e2b5300adc8408208265de934bf62e8c { 'aliquot_tag': 'ALQ_23d70888', 'gdc_sample_type': 'Primary Tumor' } C3N-00857.RNA-Seq.chimeric.T.hg38 C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 1b2725a7-f76f-4b9b-acff-3c67a0c9e0e4.rna_seq.chimeric.gdc_realn.bam 43135948 BAM chimeric harmonized CPTAC3 00d0589d-575f-4542-91c3-05083aef9c74 9a62147a87d0d66f5bef3077c1cf4db3 { 'aliquot_tag': 'ALQ_23d70888', 'gdc_sample_type': 'Primary Tumor' } C3N-00857.RNA-Seq.genomic.T.hg38 C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 1b2725a7-f76f-4b9b-acff-3c67a0c9e0e4.rna_seq.genomic.gdc_realn.bam 10452798427 BAM genomic harmonized CPTAC3 7afae0b2-d6c7-460d-855a-7f3103d38f7e 88805e259858f08040a2d02d9d38414f { 'aliquot_tag': 'ALQ_23d70888', 'gdc_sample_type': 'Primary Tumor' } -C3N-00857.RNA-Seq.R1_L003.T C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 171129_UNC32-K00270_0067_BHN2N5BBXX_GCCAAT_S10_L003_R1_001.fastq.gz 4883453334 FASTQ R1_L003 unaligned CPTAC3 f2f1e7cc-e192-4e23-adef-69eb17a72ce0 630139b9951fd04b1447e85fe19cb3f1 { 'aliquot_tag': 'ALQ_23d70888', 'gdc_sample_type': 'Primary Tumor' } -C3N-00857.RNA-Seq.R2_L003.T C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 171129_UNC32-K00270_0067_BHN2N5BBXX_GCCAAT_S10_L003_R2_001.fastq.gz 5368333581 FASTQ R2_L003 unaligned CPTAC3 c5211e48-be82-4d7a-b5a4-2aa8f3c94622 39f1daeba064cc6881c194d6783d58ec { 'aliquot_tag': 'ALQ_23d70888', 'gdc_sample_type': 'Primary Tumor' } +C3N-00857.RNA-Seq.R1_L003.T C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 171129_UNC32-K00270_0067_BHN2N5BBXX_GCCAAT_S10_L003_R1_001.fastq.gz 4883453334 FASTQ R1_L003 unaligned CPTAC3 f2f1e7cc-e192-4e23-adef-69eb17a72ce0 630139b9951fd04b1447e85fe19cb3f1 { 'aliquot_tag': 'ALQ_23d70888', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00857.RNA-Seq.R2_L003.T C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 171129_UNC32-K00270_0067_BHN2N5BBXX_GCCAAT_S10_L003_R2_001.fastq.gz 5368333581 FASTQ R2_L003 unaligned CPTAC3 c5211e48-be82-4d7a-b5a4-2aa8f3c94622 39f1daeba064cc6881c194d6783d58ec { 'aliquot_tag': 'ALQ_23d70888', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-00857.RNA-Seq.transcriptome.T.hg38 C3N-00857 HNSCC RNA-Seq tumor CPT0094350007 1b2725a7-f76f-4b9b-acff-3c67a0c9e0e4.rna_seq.transcriptome.gdc_realn.bam 12940249615 BAM transcriptome harmonized CPTAC3 d9261b28-d523-4940-ba4e-ceffdcd61350 233f50f895a1c7f75b63fb5794950fcc { 'aliquot_tag': 'ALQ_23d70888', 'gdc_sample_type': 'Primary Tumor' } C3N-00857.WGS.N C3N-00857 HNSCC WGS blood_normal CPT0094410002 CPT0094410002.WholeGenome.RP-1303.bam 63264032177 BAM aligned CPTAC3 c0d16dc7-5a4d-4ccc-b8ed-2024c70163f2 4f7a6b6929b168202b43bccef8ca595b { 'aliquot_tag': 'ALQ_bb386a7f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00857.WGS.N.hg38 C3N-00857 HNSCC WGS blood_normal CPT0094410002 ba31c45d-375b-4fc2-99dc-f4ae4dc7f11e_wgs_gdc_realn.bam 93711501307 BAM harmonized CPTAC3 5f50bf28-f365-48d9-b917-c4a7fa2febc1 19f0f8eef8816467334d5b2d8b74e99b { 'aliquot_tag': 'ALQ_bb386a7f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23041,16 +24898,19 @@ C3N-00858.miRNA-Seq.T C3N-00858 UCEC miRNA-Seq tumor CPT0078320007 181012_UNC32- C3N-00858.miRNA-Seq.T.hg38 C3N-00858 UCEC miRNA-Seq tumor CPT0078320007 768989ed-fb2e-457c-8e1c-ed8f89b3b53d_mirnaseq_gdc_realn.bam 187698807 BAM harmonized CPTAC3 d3bba150-cc5e-4f37-860c-6ef37b9971ba 8b5bde3a865f6621637feacada402c4c { 'aliquot_tag': 'ALQ_43ddacde', 'gdc_sample_type': 'Primary Tumor' } C3N-00858.RNA-Seq.chimeric.A.hg38 C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 0a29a5c0-6413-488a-9791-07ae5cd6e6de.rna_seq.chimeric.gdc_realn.bam 73316720 BAM chimeric harmonized CPTAC3 5fc8108e-73df-4c32-b061-3a5548d46e08 878a148030663cc1a039f3d09fb0c074 { 'aliquot_tag': 'ALQ_c15a3a88', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00858.RNA-Seq.chimeric.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0078320007 b74d9333-f1ec-4db0-ad38-cb7bf64316a2.rna_seq.chimeric.gdc_realn.bam 109851687 BAM chimeric harmonized CPTAC3 3576c0a1-9a71-430d-b922-e2c5cf21e785 5b5685361866cc45fa935c3cab554b7a { 'aliquot_tag': 'ALQ_43ddacde', 'gdc_sample_type': 'Primary Tumor' } -C3N-00858.RNA-Seq.genomic.A.hg38 C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 0a29a5c0-6413-488a-9791-07ae5cd6e6de.rna_seq.genomic.gdc_realn.bam 8934640199 BAM genomic harmonized CPTAC3 ae0eebcc-6614-4a6a-b087-6c0c5620b685 0cc7d71e3045db953d692c08253c8318 { 'aliquot_tag': 'ALQ_c15a3a88', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00858.RNA-Seq.genomic.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0078320007 b74d9333-f1ec-4db0-ad38-cb7bf64316a2.rna_seq.genomic.gdc_realn.bam 7837783210 BAM genomic harmonized CPTAC3 ec838dc9-15c8-4568-95cb-7d3700b0eb40 c0b33e5a9af5b71a5c985b41328509ca { 'aliquot_tag': 'ALQ_43ddacde', 'gdc_sample_type': 'Primary Tumor' } -C3N-00858.RNA-Seq.R1_L006.T C3N-00858 UCEC RNA-Seq tumor CPT0078320007 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTCAA_S18_L006_R1_001.fastq.gz 3764827164 FASTQ R1_L006 unaligned CPTAC3 1a17a35c-466d-4a23-aee2-04b09c784e2a 8c642df0eb3585f5a0b74dee8b807355 { 'aliquot_tag': 'ALQ_43ddacde', 'gdc_sample_type': 'Primary Tumor' } -C3N-00858.RNA-Seq.R1_L008.A C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 180313_UNC32-K00270_0085_BHT2MGBBXX_CTTGTA_S41_L008_R1_001.fastq.gz 4086730397 FASTQ R1_L008 unaligned CPTAC3 2bb35dfa-8915-4f44-a7f3-309bee055f37 28c00169301f5222020b2da31b0ebe68 { 'aliquot_tag': 'ALQ_c15a3a88', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00858.RNA-Seq.R1_.T C3N-00858 UCEC RNA-Seq tumor CPT0350650001 20210729_P3_H7_WB7988-Plate3_S91_R1_001.fastq.gz 3469536062 FASTQ R1_ unaligned CPTAC3 eb12799c-ad09-4416-b018-8d6396a44280 611c53b5b5869105b9ec8d00d4485c2d { 'aliquot_tag': 'ALQ_143197', 'gdc_sample_type': 'Primary Tumor' } -C3N-00858.RNA-Seq.R2_L006.T C3N-00858 UCEC RNA-Seq tumor CPT0078320007 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTCAA_S18_L006_R2_001.fastq.gz 3980424909 FASTQ R2_L006 unaligned CPTAC3 1a561b74-0af0-4d52-9288-9fa08c5d2729 f2fa91083756613edddd96ce3db103d5 { 'aliquot_tag': 'ALQ_43ddacde', 'gdc_sample_type': 'Primary Tumor' } -C3N-00858.RNA-Seq.R2_L008.A C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 180313_UNC32-K00270_0085_BHT2MGBBXX_CTTGTA_S41_L008_R2_001.fastq.gz 4447801011 FASTQ R2_L008 unaligned CPTAC3 c3a727a2-3121-46f4-8640-749db0e909dc 43876bcaa405ec110df3aad851ac670c { 'aliquot_tag': 'ALQ_c15a3a88', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00858.RNA-Seq.R2_.T C3N-00858 UCEC RNA-Seq tumor CPT0350650001 20210729_P3_H7_WB7988-Plate3_S91_R2_001.fastq.gz 3627597888 FASTQ R2_ unaligned CPTAC3 a75cbac1-bbc0-4104-b43b-09d7ffc50d81 bb70a5160134d76f5bc7d3d77f8c89a5 { 'aliquot_tag': 'ALQ_143197', 'gdc_sample_type': 'Primary Tumor' } +C3N-00858.RNA-Seq.chimeric.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0350650001 5460e12c-0b8f-47bf-a25e-c718d2fd3415.rna_seq.chimeric.gdc_realn.bam 123692825 BAM chimeric harmonized CPTAC3 024a2932-c535-4ac6-833f-cd2a09b6b03a ec5dd4ccc141f2568299ba026f983d58 { 'aliquot_tag': 'ALQ_143197', 'gdc_sample_type': 'Primary Tumor' } +C3N-00858.RNA-Seq.genomic.A.hg38 C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 0a29a5c0-6413-488a-9791-07ae5cd6e6de.rna_seq.genomic.gdc_realn.bam 8934640199 BAM genomic harmonized CPTAC3 b90327f9-d9aa-4091-b7c2-732518c8bef5 0cc7d71e3045db953d692c08253c8318 { 'aliquot_tag': 'ALQ_c15a3a88', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00858.RNA-Seq.genomic.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0078320007 b74d9333-f1ec-4db0-ad38-cb7bf64316a2.rna_seq.genomic.gdc_realn.bam 7837783210 BAM genomic harmonized CPTAC3 0b31f5cf-52ce-4875-abc1-1b7aa04b092a c0b33e5a9af5b71a5c985b41328509ca { 'aliquot_tag': 'ALQ_43ddacde', 'gdc_sample_type': 'Primary Tumor' } +C3N-00858.RNA-Seq.genomic.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0350650001 5460e12c-0b8f-47bf-a25e-c718d2fd3415.rna_seq.genomic.gdc_realn.bam 5582539715 BAM genomic harmonized CPTAC3 0772a03c-a7f6-400e-9274-54daedde108d 8c28f28f04d7eaef203b174c95ed05ee { 'aliquot_tag': 'ALQ_143197', 'gdc_sample_type': 'Primary Tumor' } +C3N-00858.RNA-Seq.R1_L006.T C3N-00858 UCEC RNA-Seq tumor CPT0078320007 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTCAA_S18_L006_R1_001.fastq.gz 3764827164 FASTQ R1_L006 unaligned CPTAC3 1a17a35c-466d-4a23-aee2-04b09c784e2a 8c642df0eb3585f5a0b74dee8b807355 { 'aliquot_tag': 'ALQ_43ddacde', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00858.RNA-Seq.R1_L008.A C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 180313_UNC32-K00270_0085_BHT2MGBBXX_CTTGTA_S41_L008_R1_001.fastq.gz 4086730397 FASTQ R1_L008 unaligned CPTAC3 2bb35dfa-8915-4f44-a7f3-309bee055f37 28c00169301f5222020b2da31b0ebe68 { 'aliquot_tag': 'ALQ_c15a3a88', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00858.RNA-Seq.R2_L006.T C3N-00858 UCEC RNA-Seq tumor CPT0078320007 170830_UNC31-K00269_0078_AHLCVMBBXX_AGTCAA_S18_L006_R2_001.fastq.gz 3980424909 FASTQ R2_L006 unaligned CPTAC3 1a561b74-0af0-4d52-9288-9fa08c5d2729 f2fa91083756613edddd96ce3db103d5 { 'aliquot_tag': 'ALQ_43ddacde', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-00858.RNA-Seq.R2_L008.A C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 180313_UNC32-K00270_0085_BHT2MGBBXX_CTTGTA_S41_L008_R2_001.fastq.gz 4447801011 FASTQ R2_L008 unaligned CPTAC3 c3a727a2-3121-46f4-8640-749db0e909dc 43876bcaa405ec110df3aad851ac670c { 'aliquot_tag': 'ALQ_c15a3a88', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00858.RNA-Seq.T C3N-00858 UCEC RNA-Seq tumor CPT0350650001 20210729_P3_H7_WB7988-Plate3_S91_R1_001.fastq.gz 3469536062 FASTQ unaligned CPTAC3 eb12799c-ad09-4416-b018-8d6396a44280 611c53b5b5869105b9ec8d00d4485c2d +C3N-00858.RNA-Seq.T C3N-00858 UCEC RNA-Seq tumor CPT0350650001 20210729_P3_H7_WB7988-Plate3_S91_R2_001.fastq.gz 3627597888 FASTQ unaligned CPTAC3 a75cbac1-bbc0-4104-b43b-09d7ffc50d81 bb70a5160134d76f5bc7d3d77f8c89a5 C3N-00858.RNA-Seq.transcriptome.A.hg38 C3N-00858 UCEC RNA-Seq tissue_normal CPT0078360006 0a29a5c0-6413-488a-9791-07ae5cd6e6de.rna_seq.transcriptome.gdc_realn.bam 10877374454 BAM transcriptome harmonized CPTAC3 c8af88a7-895a-485d-986b-54198afecb78 be88f5a70f56ad22bbee58edf3249b7f { 'aliquot_tag': 'ALQ_c15a3a88', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00858.RNA-Seq.transcriptome.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0078320007 b74d9333-f1ec-4db0-ad38-cb7bf64316a2.rna_seq.transcriptome.gdc_realn.bam 9282282929 BAM transcriptome harmonized CPTAC3 36438c2c-5343-4c18-8cd7-3051b2148af4 3e5f9b6f5d87574f741cb06af85a5850 { 'aliquot_tag': 'ALQ_43ddacde', 'gdc_sample_type': 'Primary Tumor' } +C3N-00858.RNA-Seq.transcriptome.T.hg38 C3N-00858 UCEC RNA-Seq tumor CPT0350650001 5460e12c-0b8f-47bf-a25e-c718d2fd3415.rna_seq.transcriptome.gdc_realn.bam 3498167891 BAM transcriptome harmonized CPTAC3 2536a3d3-2f9d-402f-bb0e-8d896017d8e0 4bfa050d95e15ba49cd125991b8c59d5 { 'aliquot_tag': 'ALQ_143197', 'gdc_sample_type': 'Primary Tumor' } C3N-00858.WGS.A C3N-00858 UCEC WGS tissue_normal CPT0078360009 CPT0078360009.WholeGenome.RP-1303.bam 56506640424 BAM aligned CPTAC3 7434aa4c-cd17-4080-9e89-f5ca44b1e430 1b65e1cf66a7d202c6ba8708c58f30f9 { 'aliquot_tag': 'ALQ_51e52719', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00858.WGS.A.hg38 C3N-00858 UCEC WGS tissue_normal CPT0078360009 6c7c0305-35b0-42c0-8533-44b170b53ccd_wgs_gdc_realn.bam 81540496024 BAM harmonized CPTAC3 e3e72f8f-399d-46f6-b469-94fec8e47aac 22dc4bc3eeeaa80200fb7823134c7528 { 'aliquot_tag': 'ALQ_51e52719', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00858.WGS.N C3N-00858 UCEC WGS blood_normal CPT0078420002 CPT0078420002.WholeGenome.RP-1303.bam 74524744064 BAM aligned CPTAC3 e9b8ebee-daff-405b-a17e-33f230c39e80 ba9cdec7cf3dd7ae413528f6d7430a31 { 'aliquot_tag': 'ALQ_2eb268e9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23069,18 +24929,21 @@ C3N-00859.miRNA-Seq.A C3N-00859 UCEC miRNA-Seq tissue_normal CPT0116040009 19022 C3N-00859.miRNA-Seq.A.hg38 C3N-00859 UCEC miRNA-Seq tissue_normal CPT0116040009 d15ef2c3-3683-4e72-a21a-3e64ccdad6dd_mirnaseq_gdc_realn.bam 214842095 BAM harmonized CPTAC3 cd523a00-c8c7-400e-a499-f8f1747f348a d66074f053a668eda2febf8ad9802b8b { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00859.miRNA-Seq.T C3N-00859 UCEC miRNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0176_AHYGLVBBXX_TAATCG_S42_L003_R1_001.unaln.bam 198072320 BAM unaligned CPTAC3 d2f17c51-83fa-46e4-83fc-3c316b081219 24eb4b6e0c6ca4a1b64e478c00778690 { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor' } C3N-00859.miRNA-Seq.T.hg38 C3N-00859 UCEC miRNA-Seq tumor CPT0116010010 b3fa1c9c-2198-4cdd-a6e1-f8d92d7432ec_mirnaseq_gdc_realn.bam 225112197 BAM harmonized CPTAC3 bcbded0b-ca9c-4074-9c55-57c6173ea5e3 c8235ce2039a5a05bdebfaf9b4ce3ee2 { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor' } -C3N-00859.RNA-Seq.chimeric.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 53581ca4-cacc-45a6-9722-a2f93fc8b394.rna_seq.chimeric.gdc_realn.bam 38175386 BAM chimeric harmonized CPTAC3 91f12f24-45c5-4a43-ab1d-5f7039ef61e4 0755a319b5931f21cf5d4d702b2f20e4 { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00859.RNA-Seq.chimeric.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 6cbc4951-6127-4383-9850-671c0321e271.rna_seq.chimeric.gdc_realn.bam 32481331 BAM chimeric harmonized CPTAC3 fd24e903-613d-4b3d-9eb4-0ac827f886be 665d7ed2f9bef397fa2aaad1c80a3987 { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor' } -C3N-00859.RNA-Seq.genomic.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 53581ca4-cacc-45a6-9722-a2f93fc8b394.rna_seq.genomic.gdc_realn.bam 9170744751 BAM genomic harmonized CPTAC3 df399c27-8e36-4713-b223-3d8e13674e7a 7c726aafa6728576244f0a1fe83d2392 { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00859.RNA-Seq.genomic.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 6cbc4951-6127-4383-9850-671c0321e271.rna_seq.genomic.gdc_realn.bam 9561985865 BAM genomic harmonized CPTAC3 c43fe9f5-98d8-4a12-8073-67afea8baf6f 8b11d6d9ff4f7a3b03ae127fca33abc3 { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor' } -C3N-00859.RNA-Seq.R1_L008.A C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L008_R1_001.fastq.gz 4222001969 FASTQ R1_L008 unaligned CPTAC3 425c048c-b618-476a-aa1e-70ca92626d3a 6a354a88a87e1becae42aa8041c168be { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00859.RNA-Seq.R1_L008.T C3N-00859 UCEC RNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L008_R1_001.fastq.gz 4335261636 FASTQ R1_L008 unaligned CPTAC3 8dd7f6fe-7301-4f05-9c51-09fa093615c6 403ddc0bedf9063ae2ed0e24cd9c2948 { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor' } -C3N-00859.RNA-Seq.R1_.T C3N-00859 UCEC RNA-Seq tumor CPT0350710001 20210723_P2_C3_WB7988-plate2_S27_R1_001.fastq.gz 7350883379 FASTQ R1_ unaligned CPTAC3 3d9db123-9d27-4026-a591-fae7284379e8 e26782f25762592e5df59adad4c4c7c6 { 'aliquot_tag': 'ALQ_3ec844f2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00859.RNA-Seq.R2_L008.A C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L008_R2_001.fastq.gz 4378688447 FASTQ R2_L008 unaligned CPTAC3 ad36bd5f-4cee-4b18-8fe0-a6208f6bfe40 d7e7b2855e97ff7791e225d32519837b { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00859.RNA-Seq.R2_L008.T C3N-00859 UCEC RNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L008_R2_001.fastq.gz 4343390030 FASTQ R2_L008 unaligned CPTAC3 4bf41836-12db-4818-8d67-8993e64fba01 4dbe9cd5d3ae4bc171ab0c55b37b6a01 { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor' } -C3N-00859.RNA-Seq.R2_.T C3N-00859 UCEC RNA-Seq tumor CPT0350710001 20210723_P2_C3_WB7988-plate2_S27_R2_001.fastq.gz 7481981511 FASTQ R2_ unaligned CPTAC3 6ee0a228-39c7-453e-b81f-041e9bc3888d 530260af8473d8cd7c43057372e66bb4 { 'aliquot_tag': 'ALQ_3ec844f2', 'gdc_sample_type': 'Primary Tumor' } -C3N-00859.RNA-Seq.transcriptome.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 53581ca4-cacc-45a6-9722-a2f93fc8b394.rna_seq.transcriptome.gdc_realn.bam 8601910255 BAM transcriptome harmonized CPTAC3 da553abd-03c5-4bd0-b860-2165504360ee b02f364a296b9631abdef3d06756dc19 { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00859.RNA-Seq.transcriptome.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 6cbc4951-6127-4383-9850-671c0321e271.rna_seq.transcriptome.gdc_realn.bam 9642346355 BAM transcriptome harmonized CPTAC3 0b69ce3e-0d58-431f-a47a-1f8c7490d244 6d1cd166e124ce762fac7559af351de2 { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor' } +C3N-00859.RNA-Seq.chimeric.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 d5d38eca-e13b-444f-a51a-580d1aa81f30.rna_seq.chimeric.gdc_realn.bam 38175527 BAM chimeric harmonized CPTAC3 1496b73e-b49a-4e0b-b2f7-5d7c60c962d0 ae692f7323db7cc8477f5a89181d643b { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00859.RNA-Seq.chimeric.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 d647061c-cdf8-4c44-a2bd-ebaa67c69a54.rna_seq.chimeric.gdc_realn.bam 32470428 BAM chimeric harmonized CPTAC3 84748585-a47c-4faf-ab9f-66e5ba0ca2bb 4aab9bae7183e771589121de5468a230 { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor' } +C3N-00859.RNA-Seq.chimeric.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0350710001 23924839-bae5-4636-8fe9-15eb4fb41c32.rna_seq.chimeric.gdc_realn.bam 257506137 BAM chimeric harmonized CPTAC3 2b834fa3-d0e0-4eb2-987a-6900e4dff374 0d177f8f0c021d174ee52f1b990e4434 { 'aliquot_tag': 'ALQ_3ec844f2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00859.RNA-Seq.genomic.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 d5d38eca-e13b-444f-a51a-580d1aa81f30.rna_seq.genomic.gdc_realn.bam 9171954274 BAM genomic harmonized CPTAC3 a6eb01e3-8183-46a3-be0f-ca47d8e9ee88 5b0dd00f4980d478338a9fb6d1c72256 { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00859.RNA-Seq.genomic.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 d647061c-cdf8-4c44-a2bd-ebaa67c69a54.rna_seq.genomic.gdc_realn.bam 9563489939 BAM genomic harmonized CPTAC3 849d8f9f-894d-457e-81a0-882c9f77d9e0 c1af93428b25867f19010a97e5424e3a { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor' } +C3N-00859.RNA-Seq.genomic.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0350710001 23924839-bae5-4636-8fe9-15eb4fb41c32.rna_seq.genomic.gdc_realn.bam 12148877849 BAM genomic harmonized CPTAC3 96a63629-a52d-4e6d-bd54-17a148bdf35a e2983a77522cf90b8e888f47b686cdb3 { 'aliquot_tag': 'ALQ_3ec844f2', 'gdc_sample_type': 'Primary Tumor' } +C3N-00859.RNA-Seq.R1_L008.A C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L008_R1_001.fastq.gz 4222001969 FASTQ R1_L008 unaligned CPTAC3 425c048c-b618-476a-aa1e-70ca92626d3a 6a354a88a87e1becae42aa8041c168be { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00859.RNA-Seq.R1_L008.T C3N-00859 UCEC RNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L008_R1_001.fastq.gz 4335261636 FASTQ R1_L008 unaligned CPTAC3 8dd7f6fe-7301-4f05-9c51-09fa093615c6 403ddc0bedf9063ae2ed0e24cd9c2948 { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00859.RNA-Seq.R2_L008.A C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGAAA_S19_L008_R2_001.fastq.gz 4378688447 FASTQ R2_L008 unaligned CPTAC3 ad36bd5f-4cee-4b18-8fe0-a6208f6bfe40 d7e7b2855e97ff7791e225d32519837b { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00859.RNA-Seq.R2_L008.T C3N-00859 UCEC RNA-Seq tumor CPT0116010010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L008_R2_001.fastq.gz 4343390030 FASTQ R2_L008 unaligned CPTAC3 4bf41836-12db-4818-8d67-8993e64fba01 4dbe9cd5d3ae4bc171ab0c55b37b6a01 { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00859.RNA-Seq.T C3N-00859 UCEC RNA-Seq tumor CPT0350710001 20210723_P2_C3_WB7988-plate2_S27_R1_001.fastq.gz 7350883379 FASTQ unaligned CPTAC3 3d9db123-9d27-4026-a591-fae7284379e8 e26782f25762592e5df59adad4c4c7c6 +C3N-00859.RNA-Seq.T C3N-00859 UCEC RNA-Seq tumor CPT0350710001 20210723_P2_C3_WB7988-plate2_S27_R2_001.fastq.gz 7481981511 FASTQ unaligned CPTAC3 6ee0a228-39c7-453e-b81f-041e9bc3888d 530260af8473d8cd7c43057372e66bb4 +C3N-00859.RNA-Seq.transcriptome.A.hg38 C3N-00859 UCEC RNA-Seq tissue_normal CPT0116040009 d5d38eca-e13b-444f-a51a-580d1aa81f30.rna_seq.transcriptome.gdc_realn.bam 9754540480 BAM transcriptome harmonized CPTAC3 aba4cc76-7552-48e9-baf1-cb79bf4c2669 9ed2866ba72dd71e0dc6062dd6cff44e { 'aliquot_tag': 'ALQ_2c9a604e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00859.RNA-Seq.transcriptome.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0116010010 d647061c-cdf8-4c44-a2bd-ebaa67c69a54.rna_seq.transcriptome.gdc_realn.bam 10950295193 BAM transcriptome harmonized CPTAC3 668fa6aa-9b48-47c1-8cdb-0c58708beaba 47148e2bacea255a33b7ad49b8757d8e { 'aliquot_tag': 'ALQ_84bd66db', 'gdc_sample_type': 'Primary Tumor' } +C3N-00859.RNA-Seq.transcriptome.T.hg38 C3N-00859 UCEC RNA-Seq tumor CPT0350710001 23924839-bae5-4636-8fe9-15eb4fb41c32.rna_seq.transcriptome.gdc_realn.bam 5498285387 BAM transcriptome harmonized CPTAC3 79aa48c5-805d-4012-9fa7-784bfb8a058c 8f0caee9f100f1fc4122bf3239ecc025 { 'aliquot_tag': 'ALQ_3ec844f2', 'gdc_sample_type': 'Primary Tumor' } C3N-00859.WGS.N C3N-00859 UCEC WGS blood_normal CPT0116130002 CPT0116130002.WholeGenome.RP-1303.bam 53147790036 BAM aligned CPTAC3 55b92604-1824-45e7-916a-33067953098d ede2b6321a8dd3fbbe5959207eeb3577 { 'aliquot_tag': 'ALQ_c234b673', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00859.WGS.N.hg38 C3N-00859 UCEC WGS blood_normal CPT0116130002 c6d7d55c-c04f-46b9-bc77-75ae1b1c2176_wgs_gdc_realn.bam 77971783546 BAM harmonized CPTAC3 3a08cf67-641a-4566-b6ee-b76de4b2b28c 92208f666147b24bf5370de19919a24f { 'aliquot_tag': 'ALQ_c234b673', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00859.WGS.T C3N-00859 UCEC WGS tumor CPT0116010007 CPT0116010007.WholeGenome.RP-1303.bam 58473534326 BAM aligned CPTAC3 14a601cb-538e-477b-8d5d-90b34e70a53d f5928ad04386dd3fa21ed4b00ca3325f { 'aliquot_tag': 'ALQ_3c2c239', 'gdc_sample_type': 'Primary Tumor' } @@ -23095,13 +24958,16 @@ C3N-00860.MethArray.Green.T C3N-00860 UCEC Methylation Array tumor CPT0116140007 C3N-00860.MethArray.Red.T C3N-00860 UCEC Methylation Array tumor CPT0116140007 203219650174_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 69cb4b8c-1aa4-4e4b-962e-99678215590f 4d6a6172eea50efce94486565f308c6f { 'aliquot_tag': 'ALQ_7e9eec', 'gdc_sample_type': 'Primary Tumor' } C3N-00860.miRNA-Seq.T C3N-00860 UCEC miRNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0176_AHYGLVBBXX_TACAGC_S43_L003_R1_001.unaln.bam 196943373 BAM unaligned CPTAC3 15e87dcd-158c-4323-885a-ba012c0566ba 1103670018eff28e0cba322d475ccd5a { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor' } C3N-00860.miRNA-Seq.T.hg38 C3N-00860 UCEC miRNA-Seq tumor CPT0116140010 e77c1d27-e43c-416f-a032-25c268f91b31_mirnaseq_gdc_realn.bam 222380510 BAM harmonized CPTAC3 d5b533a5-5dcd-4a6a-9451-c2d846a134be 8d4d47af0341da0be5df7a98a74a184d { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00860.RNA-Seq.chimeric.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 9fe5ab5e-b01a-4a47-8cfa-93a5de54d764.rna_seq.chimeric.gdc_realn.bam 30767692 BAM chimeric harmonized CPTAC3 73c85aff-647d-48a8-84df-8155e3309ce3 0c93463f5e252c64401716694d7f749f { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00860.RNA-Seq.genomic.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 9fe5ab5e-b01a-4a47-8cfa-93a5de54d764.rna_seq.genomic.gdc_realn.bam 8105813360 BAM genomic harmonized CPTAC3 8af22f43-95da-4e68-9262-16713fbee216 0b25326382ce3b41cf0d53e38328dbdb { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00860.RNA-Seq.R1_L008.T C3N-00860 UCEC RNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L008_R1_001.fastq.gz 3852657370 FASTQ R1_L008 unaligned CPTAC3 936067aa-6f2a-4779-af40-62508e7c1313 6a70d96fd66cfbd78aafc39a3ef165e3 { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00860.RNA-Seq.R1_.T C3N-00860 UCEC RNA-Seq tumor CPT0350740001 20210729_P3_G10_WB7988-Plate3_S82_R1_001.fastq.gz 6093621596 FASTQ R1_ unaligned CPTAC3 e422f397-cd60-4c4f-91c2-f0265b575ac3 3abb5c757bdb986ae3565b7a38f1607c { 'aliquot_tag': 'ALQ_f628cb82', 'gdc_sample_type': 'Primary Tumor' } -C3N-00860.RNA-Seq.R2_L008.T C3N-00860 UCEC RNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L008_R2_001.fastq.gz 3959297329 FASTQ R2_L008 unaligned CPTAC3 2c131676-90dd-41f3-b774-4b3e746150cc e3775bd1e60f892b64a4450b93c38e29 { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00860.RNA-Seq.R2_.T C3N-00860 UCEC RNA-Seq tumor CPT0350740001 20210729_P3_G10_WB7988-Plate3_S82_R2_001.fastq.gz 6281335918 FASTQ R2_ unaligned CPTAC3 72732b42-e9fe-454b-a48d-2032641d749f 02d7acf531ae7271156e60e0878141e8 { 'aliquot_tag': 'ALQ_f628cb82', 'gdc_sample_type': 'Primary Tumor' } -C3N-00860.RNA-Seq.transcriptome.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 9fe5ab5e-b01a-4a47-8cfa-93a5de54d764.rna_seq.transcriptome.gdc_realn.bam 7932306927 BAM transcriptome harmonized CPTAC3 97b9cf0a-d07d-4cc6-a0e7-223abcf3470a 4f180ce1858cdfbf5b16dc0b2088bde8 { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00860.RNA-Seq.chimeric.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 1dd4c3ec-4bd9-4cf8-9b8a-402f7377c639.rna_seq.chimeric.gdc_realn.bam 30754581 BAM chimeric harmonized CPTAC3 28d2a951-00ea-4153-a2bb-89246b5cfb58 c30eb52c0e5d273cb2bb0ba93a6bc5c7 { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00860.RNA-Seq.chimeric.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0350740001 b134831f-f945-4bc4-a993-4c16d64fcf96.rna_seq.chimeric.gdc_realn.bam 116837974 BAM chimeric harmonized CPTAC3 83ea41ac-83fc-4215-bc5f-ffaf8a0853bb 1f8ff1eb60fcad5c868e4e2c4b477bf4 { 'aliquot_tag': 'ALQ_f628cb82', 'gdc_sample_type': 'Primary Tumor' } +C3N-00860.RNA-Seq.genomic.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 1dd4c3ec-4bd9-4cf8-9b8a-402f7377c639.rna_seq.genomic.gdc_realn.bam 8107137531 BAM genomic harmonized CPTAC3 5021b258-3b49-4075-8feb-48f1b662a303 3eede0f07c730faa5686adda7aece2d6 { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00860.RNA-Seq.genomic.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0350740001 b134831f-f945-4bc4-a993-4c16d64fcf96.rna_seq.genomic.gdc_realn.bam 7239920172 BAM genomic harmonized CPTAC3 ebaa4998-fe87-4c67-97eb-fe14c00d6391 764b813bfaf8115444346cedd6a46208 { 'aliquot_tag': 'ALQ_f628cb82', 'gdc_sample_type': 'Primary Tumor' } +C3N-00860.RNA-Seq.R1_L008.T C3N-00860 UCEC RNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L008_R1_001.fastq.gz 3852657370 FASTQ R1_L008 unaligned CPTAC3 936067aa-6f2a-4779-af40-62508e7c1313 6a70d96fd66cfbd78aafc39a3ef165e3 { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00860.RNA-Seq.R2_L008.T C3N-00860 UCEC RNA-Seq tumor CPT0116140010 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L008_R2_001.fastq.gz 3959297329 FASTQ R2_L008 unaligned CPTAC3 2c131676-90dd-41f3-b774-4b3e746150cc e3775bd1e60f892b64a4450b93c38e29 { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00860.RNA-Seq.T C3N-00860 UCEC RNA-Seq tumor CPT0350740001 20210729_P3_G10_WB7988-Plate3_S82_R1_001.fastq.gz 6093621596 FASTQ unaligned CPTAC3 e422f397-cd60-4c4f-91c2-f0265b575ac3 3abb5c757bdb986ae3565b7a38f1607c +C3N-00860.RNA-Seq.T C3N-00860 UCEC RNA-Seq tumor CPT0350740001 20210729_P3_G10_WB7988-Plate3_S82_R2_001.fastq.gz 6281335918 FASTQ unaligned CPTAC3 72732b42-e9fe-454b-a48d-2032641d749f 02d7acf531ae7271156e60e0878141e8 +C3N-00860.RNA-Seq.transcriptome.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0116140010 1dd4c3ec-4bd9-4cf8-9b8a-402f7377c639.rna_seq.transcriptome.gdc_realn.bam 9030897892 BAM transcriptome harmonized CPTAC3 16f3bb21-286a-4b35-8c17-17e54ddf6b8a b5119748127650fb2a8f9d1e5fe7ba62 { 'aliquot_tag': 'ALQ_87013a0e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00860.RNA-Seq.transcriptome.T.hg38 C3N-00860 UCEC RNA-Seq tumor CPT0350740001 b134831f-f945-4bc4-a993-4c16d64fcf96.rna_seq.transcriptome.gdc_realn.bam 4278049900 BAM transcriptome harmonized CPTAC3 3737640e-70ae-4cd3-983f-6f166ec9af64 2de78eb890a961766253a5349b4b54fd { 'aliquot_tag': 'ALQ_f628cb82', 'gdc_sample_type': 'Primary Tumor' } C3N-00860.WGS.N C3N-00860 UCEC WGS blood_normal CPT0116240002 CPT0116240002.WholeGenome.RP-1303.bam 64399380983 BAM aligned CPTAC3 145ef959-94ac-49dc-a095-dd17e6bbf65c 232192559883e7c45d11234a46d28c97 { 'aliquot_tag': 'ALQ_f68018cd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00860.WGS.N.hg38 C3N-00860 UCEC WGS blood_normal CPT0116240002 7c58c0de-13cd-4da1-8905-59313817c99c_wgs_gdc_realn.bam 94227137464 BAM harmonized CPTAC3 11ccbcdc-bf45-4679-97ee-0132bb718f11 cfc142287b9ec14e6036ce30d62f7181 { 'aliquot_tag': 'ALQ_f68018cd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00860.WGS.T C3N-00860 UCEC WGS tumor CPT0116140007 CPT0116140007.WholeGenome.RP-1303.bam 54046227118 BAM aligned CPTAC3 7d060781-b1e4-4a50-a5d5-26fbfc357e8b 10f8bf4589da002f7a82cca956547dab { 'aliquot_tag': 'ALQ_7e9eec', 'gdc_sample_type': 'Primary Tumor' } @@ -23118,16 +24984,19 @@ C3N-00866.miRNA-Seq.T C3N-00866 UCEC miRNA-Seq tumor CPT0063090006 180924_UNC31- C3N-00866.miRNA-Seq.T.hg38 C3N-00866 UCEC miRNA-Seq tumor CPT0063090006 7c672613-2a8a-4cbf-9184-27334b900310_mirnaseq_gdc_realn.bam 184125657 BAM harmonized CPTAC3 1c759d84-2410-428b-b39d-65d0e9bd2d14 e4de14e205e1ef03dd54e515ec005655 { 'aliquot_tag': 'ALQ_b338b93', 'gdc_sample_type': 'Primary Tumor' } C3N-00866.RNA-Seq.chimeric.A.hg38 C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 0aa9c77a-9724-4e8b-a114-e6d40373f6b4.rna_seq.chimeric.gdc_realn.bam 72093749 BAM chimeric harmonized CPTAC3 fc4a9d26-2e95-450a-ae2a-4cc0659ae552 f7a4b204538b4eb23a8924d8a4882ec0 { 'aliquot_tag': 'ALQ_1e1172db', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00866.RNA-Seq.chimeric.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063090006 e28edd15-0242-4630-8914-eb4c664e273a.rna_seq.chimeric.gdc_realn.bam 31001823 BAM chimeric harmonized CPTAC3 5d553392-bb38-4b57-9a3f-980d5aaf40ea dfc8380cd1a9a5cad0b6cddc52ed81f6 { 'aliquot_tag': 'ALQ_b338b93', 'gdc_sample_type': 'Primary Tumor' } -C3N-00866.RNA-Seq.genomic.A.hg38 C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 0aa9c77a-9724-4e8b-a114-e6d40373f6b4.rna_seq.genomic.gdc_realn.bam 8227016829 BAM genomic harmonized CPTAC3 e1065aed-8b6b-4694-b63d-b20968d76a0c 0651bed40623b1b94e28d6d7bf09c1a4 { 'aliquot_tag': 'ALQ_1e1172db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00866.RNA-Seq.genomic.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063090006 e28edd15-0242-4630-8914-eb4c664e273a.rna_seq.genomic.gdc_realn.bam 8651837509 BAM genomic harmonized CPTAC3 c05124d4-aea6-4821-9e74-54bd4989be54 7663194d003cfa51fd3ed4fc9539f56e { 'aliquot_tag': 'ALQ_b338b93', 'gdc_sample_type': 'Primary Tumor' } -C3N-00866.RNA-Seq.R1_L002.T C3N-00866 UCEC RNA-Seq tumor CPT0063090006 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3972395204 FASTQ R1_L002 unaligned CPTAC3 99455b1b-f110-46ef-a03e-be651c28a0bd 104cdf258fb2a43943130acdaad08c21 { 'aliquot_tag': 'ALQ_b338b93', 'gdc_sample_type': 'Primary Tumor' } -C3N-00866.RNA-Seq.R1_L005.A C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 171205_UNC32-K00270_0069_BHN2HGBBXX_ATCACG_S17_L005_R1_001.fastq.gz 4083147786 FASTQ R1_L005 unaligned CPTAC3 af76a34d-cc47-4d15-a276-60e3923b3975 89ef8abbbda4b42701275353d5e5d9df { 'aliquot_tag': 'ALQ_1e1172db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00866.RNA-Seq.R1_.T C3N-00866 UCEC RNA-Seq tumor CPT0063130001 20210729_P3_E3_WB7988-Plate3_S51_R1_001.fastq.gz 12607998362 FASTQ R1_ unaligned CPTAC3 5a754c59-3b24-4bf0-a3a8-a4a780c68791 b0cdd6c71ad91b2ed84f97257b18db58 { 'aliquot_tag': 'ALQ_14bbd534', 'gdc_sample_type': 'Primary Tumor' } -C3N-00866.RNA-Seq.R2_L002.T C3N-00866 UCEC RNA-Seq tumor CPT0063090006 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 4257107133 FASTQ R2_L002 unaligned CPTAC3 8323759d-cdc4-481c-8518-f170b5a87082 2e6fc941e03a5728d9828a4b6a14b49e { 'aliquot_tag': 'ALQ_b338b93', 'gdc_sample_type': 'Primary Tumor' } -C3N-00866.RNA-Seq.R2_L005.A C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 171205_UNC32-K00270_0069_BHN2HGBBXX_ATCACG_S17_L005_R2_001.fastq.gz 3908032870 FASTQ R2_L005 unaligned CPTAC3 335d84c6-609f-4669-ae8c-2242a24a4fa8 0a9443bc770bd40275305da08c923fdc { 'aliquot_tag': 'ALQ_1e1172db', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00866.RNA-Seq.R2_.T C3N-00866 UCEC RNA-Seq tumor CPT0063130001 20210729_P3_E3_WB7988-Plate3_S51_R2_001.fastq.gz 13227275490 FASTQ R2_ unaligned CPTAC3 234830ec-bd6e-46ec-90ea-ada6c267176e 722d2e59df197d13904761a611af8a35 { 'aliquot_tag': 'ALQ_14bbd534', 'gdc_sample_type': 'Primary Tumor' } +C3N-00866.RNA-Seq.chimeric.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063130001 5b40cf16-d9cc-4ef8-9aab-11f941f6aec5.rna_seq.chimeric.gdc_realn.bam 378253089 BAM chimeric harmonized CPTAC3 9d902945-8e22-4e20-a39e-5caa6c2ab445 e695efe08068fcfa208211fa9a4c01d1 { 'aliquot_tag': 'ALQ_14bbd534', 'gdc_sample_type': 'Primary Tumor' } +C3N-00866.RNA-Seq.genomic.A.hg38 C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 0aa9c77a-9724-4e8b-a114-e6d40373f6b4.rna_seq.genomic.gdc_realn.bam 8227016829 BAM genomic harmonized CPTAC3 390664b5-b265-4638-9ff4-620ef4f858c8 0651bed40623b1b94e28d6d7bf09c1a4 { 'aliquot_tag': 'ALQ_1e1172db', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00866.RNA-Seq.genomic.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063090006 e28edd15-0242-4630-8914-eb4c664e273a.rna_seq.genomic.gdc_realn.bam 8651837509 BAM genomic harmonized CPTAC3 2b87693e-4bec-42b3-b03f-581746e6294b 7663194d003cfa51fd3ed4fc9539f56e { 'aliquot_tag': 'ALQ_b338b93', 'gdc_sample_type': 'Primary Tumor' } +C3N-00866.RNA-Seq.genomic.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063130001 5b40cf16-d9cc-4ef8-9aab-11f941f6aec5.rna_seq.genomic.gdc_realn.bam 18852988763 BAM genomic harmonized CPTAC3 72845ff6-2c43-442b-9732-e605d0374575 4774d938c094cb42000929c0eaa92fd1 { 'aliquot_tag': 'ALQ_14bbd534', 'gdc_sample_type': 'Primary Tumor' } +C3N-00866.RNA-Seq.R1_L002.T C3N-00866 UCEC RNA-Seq tumor CPT0063090006 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L002_R1_001.fastq.gz 3972395204 FASTQ R1_L002 unaligned CPTAC3 99455b1b-f110-46ef-a03e-be651c28a0bd 104cdf258fb2a43943130acdaad08c21 { 'aliquot_tag': 'ALQ_b338b93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00866.RNA-Seq.R1_L005.A C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 171205_UNC32-K00270_0069_BHN2HGBBXX_ATCACG_S17_L005_R1_001.fastq.gz 4083147786 FASTQ R1_L005 unaligned CPTAC3 af76a34d-cc47-4d15-a276-60e3923b3975 89ef8abbbda4b42701275353d5e5d9df { 'aliquot_tag': 'ALQ_1e1172db', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00866.RNA-Seq.R2_L002.T C3N-00866 UCEC RNA-Seq tumor CPT0063090006 170830_UNC31-K00269_0078_AHLCVMBBXX_TTAGGC_S8_L002_R2_001.fastq.gz 4257107133 FASTQ R2_L002 unaligned CPTAC3 8323759d-cdc4-481c-8518-f170b5a87082 2e6fc941e03a5728d9828a4b6a14b49e { 'aliquot_tag': 'ALQ_b338b93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-00866.RNA-Seq.R2_L005.A C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 171205_UNC32-K00270_0069_BHN2HGBBXX_ATCACG_S17_L005_R2_001.fastq.gz 3908032870 FASTQ R2_L005 unaligned CPTAC3 335d84c6-609f-4669-ae8c-2242a24a4fa8 0a9443bc770bd40275305da08c923fdc { 'aliquot_tag': 'ALQ_1e1172db', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-00866.RNA-Seq.T C3N-00866 UCEC RNA-Seq tumor CPT0063130001 20210729_P3_E3_WB7988-Plate3_S51_R1_001.fastq.gz 12607998362 FASTQ unaligned CPTAC3 5a754c59-3b24-4bf0-a3a8-a4a780c68791 b0cdd6c71ad91b2ed84f97257b18db58 +C3N-00866.RNA-Seq.T C3N-00866 UCEC RNA-Seq tumor CPT0063130001 20210729_P3_E3_WB7988-Plate3_S51_R2_001.fastq.gz 13227275490 FASTQ unaligned CPTAC3 234830ec-bd6e-46ec-90ea-ada6c267176e 722d2e59df197d13904761a611af8a35 C3N-00866.RNA-Seq.transcriptome.A.hg38 C3N-00866 UCEC RNA-Seq tissue_normal CPT0063110004 0aa9c77a-9724-4e8b-a114-e6d40373f6b4.rna_seq.transcriptome.gdc_realn.bam 9849650483 BAM transcriptome harmonized CPTAC3 117329ea-c7ba-447a-acb6-2b0a5b45bf1c e44e221bc0b79fb164dcfcbd125c1095 { 'aliquot_tag': 'ALQ_1e1172db', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00866.RNA-Seq.transcriptome.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063090006 e28edd15-0242-4630-8914-eb4c664e273a.rna_seq.transcriptome.gdc_realn.bam 7779974912 BAM transcriptome harmonized CPTAC3 9db68238-f0c7-4e31-9c87-3989a634269d 609affeb981ee3d6edfa0afe91439b3f { 'aliquot_tag': 'ALQ_b338b93', 'gdc_sample_type': 'Primary Tumor' } +C3N-00866.RNA-Seq.transcriptome.T.hg38 C3N-00866 UCEC RNA-Seq tumor CPT0063130001 5b40cf16-d9cc-4ef8-9aab-11f941f6aec5.rna_seq.transcriptome.gdc_realn.bam 11025174347 BAM transcriptome harmonized CPTAC3 a4d0c34a-ec52-41a1-9c09-b5daa226c83f 186d79e1e0c9575e2ef8c2116183b346 { 'aliquot_tag': 'ALQ_14bbd534', 'gdc_sample_type': 'Primary Tumor' } C3N-00866.WGS.N C3N-00866 UCEC WGS blood_normal CPT0063210002 CPT0063210002.WholeGenome.RP-1303.bam 71157671685 BAM aligned CPTAC3 d3c0841e-9602-4cb2-9d28-7ce2c79e8e61 f022065290148a17565df4af2c9ae46a { 'aliquot_tag': 'ALQ_71e6a540', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00866.WGS.N.hg38 C3N-00866 UCEC WGS blood_normal CPT0063210002 5a955d91-4992-4986-a78b-a2f80f455ea1_gdc_realn.bam 113783908681 BAM harmonized CPTAC3 3cc9b549-bbac-48cc-8a82-5486203bf83d 263d7920ae3725bbe50bf39a59a2ff89 { 'aliquot_tag': 'ALQ_71e6a540', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00866.WGS.T C3N-00866 UCEC WGS tumor CPT0063090009 CPT0063090009.WholeGenome.RP-1303.bam 68887603626 BAM aligned CPTAC3 c344cec3-e9ee-43f1-823c-e1993b4ae46d 23d6091d6eae44d6356b277fd9a1b1a2 { 'aliquot_tag': 'ALQ_9b8c9602', 'gdc_sample_type': 'Primary Tumor' } @@ -23141,12 +25010,15 @@ C3N-00871.MethArray.Red.T C3N-00871 HNSCC Methylation Array tumor CPT0094420010 C3N-00871.miRNA-Seq.T C3N-00871 HNSCC miRNA-Seq tumor CPT0094420007 180828_UNC32-K00270_0112_AHWTLNBBXX_CACGAT_S37_L007_R1_001.unaln.bam 199443131 BAM unaligned CPTAC3 3ffd7835-31e2-4858-b845-1b0ee7602710 a304a69bbe4a9507db1de124243aeb9e { 'aliquot_tag': 'ALQ_8cf2e420', 'gdc_sample_type': 'Primary Tumor' } C3N-00871.miRNA-Seq.T.hg38 C3N-00871 HNSCC miRNA-Seq tumor CPT0094420007 d41f2be7-f487-4026-ac54-b20e99d4d795_mirnaseq_gdc_realn.bam 219705116 BAM harmonized CPTAC3 ad0f53a9-caa0-430f-a577-91244afe7eab 9008670a492f725285885387a8ed35f8 { 'aliquot_tag': 'ALQ_8cf2e420', 'gdc_sample_type': 'Primary Tumor' } C3N-00871.RNA-Seq.chimeric.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 e0b14d73-d7bc-4069-9429-1f8fbfbce396.rna_seq.chimeric.gdc_realn.bam 33264680 BAM chimeric harmonized CPTAC3 bf5ac8c2-fcff-4d55-9b08-b4b7a951af81 cadd0c0e2969dca6158679004df75f1e { 'aliquot_tag': 'ALQ_8cf2e420', 'gdc_sample_type': 'Primary Tumor' } +C3N-00871.RNA-Seq.chimeric.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 18bb6154-91fe-437a-be9a-108f458d9c83.rna_seq.chimeric.gdc_realn.bam 268189092 BAM chimeric harmonized CPTAC3 e6f039a9-6da7-488b-8280-a02473dc2ec6 36d9397cc818fdb0844aa9f1b258a448 { 'aliquot_tag': 'ALQ_dc524f85', 'gdc_sample_type': 'Primary Tumor' } C3N-00871.RNA-Seq.genomic.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 e0b14d73-d7bc-4069-9429-1f8fbfbce396.rna_seq.genomic.gdc_realn.bam 8764417737 BAM genomic harmonized CPTAC3 5c385d3b-df34-495c-87d3-2bdb083140d0 dbdac3f4997713a3ef7bc9aa09d2e232 { 'aliquot_tag': 'ALQ_8cf2e420', 'gdc_sample_type': 'Primary Tumor' } -C3N-00871.RNA-Seq.R1_L003.T C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 171129_UNC32-K00270_0067_BHN2N5BBXX_CAGATC_S9_L003_R1_001.fastq.gz 4135810698 FASTQ R1_L003 unaligned CPTAC3 a73fcaff-9a1e-4c69-8cb5-e86675a2b9e5 4ef2eca695ab13b78f8bef010486cd7b { 'aliquot_tag': 'ALQ_8cf2e420', 'gdc_sample_type': 'Primary Tumor' } -C3N-00871.RNA-Seq.R1_.T C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 20210723_P2_E6_WB7988-plate2_S54_R1_001.fastq.gz 8918622985 FASTQ R1_ unaligned CPTAC3 bcb11898-0cfd-414a-b606-28e376bd2632 469c641be16ddad4724f63be92a87bb1 { 'aliquot_tag': 'ALQ_dc524f85', 'gdc_sample_type': 'Primary Tumor' } -C3N-00871.RNA-Seq.R2_L003.T C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 171129_UNC32-K00270_0067_BHN2N5BBXX_CAGATC_S9_L003_R2_001.fastq.gz 4525311768 FASTQ R2_L003 unaligned CPTAC3 e1a47c74-afd0-4f7f-b392-54a4b6b2ea41 0f41aba291cd9a7d8216be19c0a35092 { 'aliquot_tag': 'ALQ_8cf2e420', 'gdc_sample_type': 'Primary Tumor' } -C3N-00871.RNA-Seq.R2_.T C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 20210723_P2_E6_WB7988-plate2_S54_R2_001.fastq.gz 9218630952 FASTQ R2_ unaligned CPTAC3 4576db9e-8de9-4f5c-b980-4a11287f6dfc 5c6cb107b7954a11051ff4d63631453a { 'aliquot_tag': 'ALQ_dc524f85', 'gdc_sample_type': 'Primary Tumor' } +C3N-00871.RNA-Seq.genomic.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 18bb6154-91fe-437a-be9a-108f458d9c83.rna_seq.genomic.gdc_realn.bam 14158024006 BAM genomic harmonized CPTAC3 8eb97547-9bb6-40e4-97f5-288bc73a0e53 1a7176a2b27f5cb9dae610daa46a0eae { 'aliquot_tag': 'ALQ_dc524f85', 'gdc_sample_type': 'Primary Tumor' } +C3N-00871.RNA-Seq.R1_L003.T C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 171129_UNC32-K00270_0067_BHN2N5BBXX_CAGATC_S9_L003_R1_001.fastq.gz 4135810698 FASTQ R1_L003 unaligned CPTAC3 a73fcaff-9a1e-4c69-8cb5-e86675a2b9e5 4ef2eca695ab13b78f8bef010486cd7b { 'aliquot_tag': 'ALQ_8cf2e420', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-00871.RNA-Seq.R2_L003.T C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 171129_UNC32-K00270_0067_BHN2N5BBXX_CAGATC_S9_L003_R2_001.fastq.gz 4525311768 FASTQ R2_L003 unaligned CPTAC3 e1a47c74-afd0-4f7f-b392-54a4b6b2ea41 0f41aba291cd9a7d8216be19c0a35092 { 'aliquot_tag': 'ALQ_8cf2e420', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-00871.RNA-Seq.T C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 20210723_P2_E6_WB7988-plate2_S54_R1_001.fastq.gz 8918622985 FASTQ unaligned CPTAC3 bcb11898-0cfd-414a-b606-28e376bd2632 469c641be16ddad4724f63be92a87bb1 +C3N-00871.RNA-Seq.T C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 20210723_P2_E6_WB7988-plate2_S54_R2_001.fastq.gz 9218630952 FASTQ unaligned CPTAC3 4576db9e-8de9-4f5c-b980-4a11287f6dfc 5c6cb107b7954a11051ff4d63631453a C3N-00871.RNA-Seq.transcriptome.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0094420007 e0b14d73-d7bc-4069-9429-1f8fbfbce396.rna_seq.transcriptome.gdc_realn.bam 11572685723 BAM transcriptome harmonized CPTAC3 d192c8e5-0638-41d8-8622-86d1208343d2 bfe50b4e1464901a56e57b275f313aa6 { 'aliquot_tag': 'ALQ_8cf2e420', 'gdc_sample_type': 'Primary Tumor' } +C3N-00871.RNA-Seq.transcriptome.T.hg38 C3N-00871 HNSCC RNA-Seq tumor CPT0314480011 18bb6154-91fe-437a-be9a-108f458d9c83.rna_seq.transcriptome.gdc_realn.bam 10501590845 BAM transcriptome harmonized CPTAC3 d1d8ed81-667a-4229-9041-2000a65f93a9 f06c174536e513c8543e38133491f2d5 { 'aliquot_tag': 'ALQ_dc524f85', 'gdc_sample_type': 'Primary Tumor' } C3N-00871.WGS.N C3N-00871 HNSCC WGS blood_normal CPT0094480008 CPT0094480008.WholeGenome.RP-1303.bam 72393575679 BAM aligned CPTAC3 5d65c146-0618-469e-9ce1-1be4bc2effe3 ba6c150f8f885013943acc629b337b8e { 'aliquot_tag': 'ALQ_56fde110', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00871.WGS.N.hg38 C3N-00871 HNSCC WGS blood_normal CPT0094480008 977a93e6-4351-45fa-96de-8cc607966272_wgs_gdc_realn.bam 107188077288 BAM harmonized CPTAC3 797ef08b-2a03-4445-8cf9-56d515b2d92a 95067fff09c612ebb4ab8fbed38930fd { 'aliquot_tag': 'ALQ_56fde110', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00871.WGS.T C3N-00871 HNSCC WGS tumor CPT0094420010 CPT0094420010.WholeGenome.RP-1303.bam 61468563846 BAM aligned CPTAC3 b3d6c036-cbcc-49e5-b02c-2a4ac5321d25 34f7665600b1af004ee078428bfbfac9 { 'aliquot_tag': 'ALQ_b8d40c2', 'gdc_sample_type': 'Primary Tumor' } @@ -23161,18 +25033,21 @@ C3N-00872.miRNA-Seq.A C3N-00872 UCEC miRNA-Seq tissue_normal CPT0116280009 19013 C3N-00872.miRNA-Seq.A.hg38 C3N-00872 UCEC miRNA-Seq tissue_normal CPT0116280009 a4a08f34-5c15-42ea-ac72-7eec5fbc1fc3_mirnaseq_gdc_realn.bam 287787191 BAM harmonized CPTAC3 ed4ed58d-6da8-4bfe-9ea6-6c04669445e5 c40137aa9600cbe63d39b38f6af9869f { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00872.miRNA-Seq.T C3N-00872 UCEC miRNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0176_AHYGLVBBXX_TATAAT_S44_L003_R1_001.unaln.bam 244173309 BAM unaligned CPTAC3 253cbe12-4c14-41d3-b323-1219ec2748cd 184f42116516c75ab72ee7a08b229c1a { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor' } C3N-00872.miRNA-Seq.T.hg38 C3N-00872 UCEC miRNA-Seq tumor CPT0116250010 972e0acc-1bea-46d7-a506-87b186e36cdc_mirnaseq_gdc_realn.bam 265907333 BAM harmonized CPTAC3 c285e884-eba4-45c9-8bcb-66defd98bedf 008de24727adc0528423e6b8a02e1458 { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor' } -C3N-00872.RNA-Seq.chimeric.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 a2e99a66-34f0-4575-bc9c-b81bf6de3153.rna_seq.chimeric.gdc_realn.bam 48819109 BAM chimeric harmonized CPTAC3 d88ab5ef-10cc-4ea5-a079-7bdfb50ee7cc 0b7e8a54e99bf6230aa5d21fb5f5dbab { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00872.RNA-Seq.chimeric.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 60e69599-184f-403f-bb56-9dfb0f825334.rna_seq.chimeric.gdc_realn.bam 29226651 BAM chimeric harmonized CPTAC3 5bfca6ea-bf98-4533-afa8-ecfb613e7248 2ba81bf66f17eca4ff2d05bdb28f173f { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor' } -C3N-00872.RNA-Seq.genomic.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 a2e99a66-34f0-4575-bc9c-b81bf6de3153.rna_seq.genomic.gdc_realn.bam 10025820248 BAM genomic harmonized CPTAC3 54c667bc-098f-418b-8b31-282e530fb26d be85b8b4e839f42453877902cc08b1c4 { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00872.RNA-Seq.genomic.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 60e69599-184f-403f-bb56-9dfb0f825334.rna_seq.genomic.gdc_realn.bam 7872507657 BAM genomic harmonized CPTAC3 b8fc897c-e6cf-4a38-8dca-c28cdc50a226 3b7d25c3c798fa750eee83383809b3b6 { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor' } -C3N-00872.RNA-Seq.R1_L002.A C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L002_R1_001.fastq.gz 4281378466 FASTQ R1_L002 unaligned CPTAC3 bb274bbe-0077-4577-aa4b-89656d4a19de d263d59d51b0737146defb3c727689f5 { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00872.RNA-Seq.R1_L008.T C3N-00872 UCEC RNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L008_R1_001.fastq.gz 3696897511 FASTQ R1_L008 unaligned CPTAC3 cabfd70f-26b9-44d8-ad68-1542477ab7c9 9d6ec0094f2edcdcdc457ae3d245af9b { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor' } -C3N-00872.RNA-Seq.R1_.T C3N-00872 UCEC RNA-Seq tumor CPT0350780001 20210714_P1_C9_WB7988_plate1_S33_R1_001.fastq.gz 6988351710 FASTQ R1_ unaligned CPTAC3 1629fad9-4878-4c77-8899-a2d7420986f3 75ab052e521d51a5072fb9ed9bcb9b34 { 'aliquot_tag': 'ALQ_33d82683', 'gdc_sample_type': 'Primary Tumor' } -C3N-00872.RNA-Seq.R2_L002.A C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L002_R2_001.fastq.gz 4719270240 FASTQ R2_L002 unaligned CPTAC3 110a4c7e-71f1-4d8d-9092-e5424030f813 3268655cb200095538ca5916384fd198 { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00872.RNA-Seq.R2_L008.T C3N-00872 UCEC RNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L008_R2_001.fastq.gz 3873724480 FASTQ R2_L008 unaligned CPTAC3 99b4e1f1-34d9-4b69-bb5e-5b3ffc0fcee0 e48e636651674f04f44b9bfda3fd03bf { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor' } -C3N-00872.RNA-Seq.R2_.T C3N-00872 UCEC RNA-Seq tumor CPT0350780001 20210714_P1_C9_WB7988_plate1_S33_R2_001.fastq.gz 7285825912 FASTQ R2_ unaligned CPTAC3 d3609305-26e7-42f5-b92a-43ccea1d7b12 b60ee59e0e3f38892438b87378ebf86b { 'aliquot_tag': 'ALQ_33d82683', 'gdc_sample_type': 'Primary Tumor' } -C3N-00872.RNA-Seq.transcriptome.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 a2e99a66-34f0-4575-bc9c-b81bf6de3153.rna_seq.transcriptome.gdc_realn.bam 9941800830 BAM transcriptome harmonized CPTAC3 f3b7a9de-2469-4341-a8f2-e230c6b82d39 a9dc59fd631613bdc957287aa62cad46 { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00872.RNA-Seq.transcriptome.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 60e69599-184f-403f-bb56-9dfb0f825334.rna_seq.transcriptome.gdc_realn.bam 8967679855 BAM transcriptome harmonized CPTAC3 c9f5c211-c52e-4c6e-b78e-7fc9919bada7 22ce64a5012901619e247a9a15be0f50 { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor' } +C3N-00872.RNA-Seq.chimeric.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 129ba09e-1e2d-4c65-816a-0db3a8c212e9.rna_seq.chimeric.gdc_realn.bam 48792243 BAM chimeric harmonized CPTAC3 72160f21-623f-4daa-95dd-86a2170fc451 d6e0ffd1cdce071dd6e56e512c87854d { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00872.RNA-Seq.chimeric.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 b064590e-0ca6-4b1b-aadb-048633243da6.rna_seq.chimeric.gdc_realn.bam 29220840 BAM chimeric harmonized CPTAC3 d1786076-4514-451f-9670-e0d12a0a17a2 9be77e8fa01dbfe3bfa3a906e58e0485 { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor' } +C3N-00872.RNA-Seq.chimeric.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0350780001 c11d8f64-9b2f-4558-b0c0-cb55f5e4b8c7.rna_seq.chimeric.gdc_realn.bam 196913389 BAM chimeric harmonized CPTAC3 d1e7cefe-5dbd-41f9-ac03-18b576008ce7 22387d7d4ba83d7333469234413ab742 { 'aliquot_tag': 'ALQ_33d82683', 'gdc_sample_type': 'Primary Tumor' } +C3N-00872.RNA-Seq.genomic.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 129ba09e-1e2d-4c65-816a-0db3a8c212e9.rna_seq.genomic.gdc_realn.bam 10027076893 BAM genomic harmonized CPTAC3 d94b58e7-30c6-443b-9ac3-328192c06fa0 e8ca4753197954b9fe386f2173f0ec80 { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00872.RNA-Seq.genomic.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 b064590e-0ca6-4b1b-aadb-048633243da6.rna_seq.genomic.gdc_realn.bam 7873876795 BAM genomic harmonized CPTAC3 10ca5a27-027b-438a-a5f6-60b4c059f6c7 ffe5764ef37f45060e517c38b6b79abc { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor' } +C3N-00872.RNA-Seq.genomic.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0350780001 c11d8f64-9b2f-4558-b0c0-cb55f5e4b8c7.rna_seq.genomic.gdc_realn.bam 11047598524 BAM genomic harmonized CPTAC3 e416f5a0-1ad6-434f-9322-b85badf05592 0a59ff72b47b500313ae9b09a0452596 { 'aliquot_tag': 'ALQ_33d82683', 'gdc_sample_type': 'Primary Tumor' } +C3N-00872.RNA-Seq.R1_L002.A C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L002_R1_001.fastq.gz 4281378466 FASTQ R1_L002 unaligned CPTAC3 bb274bbe-0077-4577-aa4b-89656d4a19de d263d59d51b0737146defb3c727689f5 { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-00872.RNA-Seq.R1_L008.T C3N-00872 UCEC RNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L008_R1_001.fastq.gz 3696897511 FASTQ R1_L008 unaligned CPTAC3 cabfd70f-26b9-44d8-ad68-1542477ab7c9 9d6ec0094f2edcdcdc457ae3d245af9b { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-00872.RNA-Seq.R2_L002.A C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTGGCC_S5_L002_R2_001.fastq.gz 4719270240 FASTQ R2_L002 unaligned CPTAC3 110a4c7e-71f1-4d8d-9092-e5424030f813 3268655cb200095538ca5916384fd198 { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-00872.RNA-Seq.R2_L008.T C3N-00872 UCEC RNA-Seq tumor CPT0116250010 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L008_R2_001.fastq.gz 3873724480 FASTQ R2_L008 unaligned CPTAC3 99b4e1f1-34d9-4b69-bb5e-5b3ffc0fcee0 e48e636651674f04f44b9bfda3fd03bf { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-00872.RNA-Seq.T C3N-00872 UCEC RNA-Seq tumor CPT0350780001 20210714_P1_C9_WB7988_plate1_S33_R1_001.fastq.gz 6988351710 FASTQ unaligned CPTAC3 1629fad9-4878-4c77-8899-a2d7420986f3 75ab052e521d51a5072fb9ed9bcb9b34 +C3N-00872.RNA-Seq.T C3N-00872 UCEC RNA-Seq tumor CPT0350780001 20210714_P1_C9_WB7988_plate1_S33_R2_001.fastq.gz 7285825912 FASTQ unaligned CPTAC3 d3609305-26e7-42f5-b92a-43ccea1d7b12 b60ee59e0e3f38892438b87378ebf86b +C3N-00872.RNA-Seq.transcriptome.A.hg38 C3N-00872 UCEC RNA-Seq tissue_normal CPT0116280009 129ba09e-1e2d-4c65-816a-0db3a8c212e9.rna_seq.transcriptome.gdc_realn.bam 11336448211 BAM transcriptome harmonized CPTAC3 9faa9151-a6cf-423b-80e9-8f0fca7f9300 09fefcd89787ffeef8389ec4de467d58 { 'aliquot_tag': 'ALQ_a4a22c44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00872.RNA-Seq.transcriptome.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0116250010 b064590e-0ca6-4b1b-aadb-048633243da6.rna_seq.transcriptome.gdc_realn.bam 10180645064 BAM transcriptome harmonized CPTAC3 93f0c8b0-9d42-4ab9-8438-22561f299106 1c499663e382f1908c799ee052ce34d9 { 'aliquot_tag': 'ALQ_3cf56110', 'gdc_sample_type': 'Primary Tumor' } +C3N-00872.RNA-Seq.transcriptome.T.hg38 C3N-00872 UCEC RNA-Seq tumor CPT0350780001 c11d8f64-9b2f-4558-b0c0-cb55f5e4b8c7.rna_seq.transcriptome.gdc_realn.bam 5137278610 BAM transcriptome harmonized CPTAC3 b263b6f9-07da-4d13-bd80-335101059198 4978cb7d4b79622387deb1ef7bcdb3a8 { 'aliquot_tag': 'ALQ_33d82683', 'gdc_sample_type': 'Primary Tumor' } C3N-00872.WGS.N C3N-00872 UCEC WGS blood_normal CPT0116330002 CPT0116330002.WholeGenome.RP-1303.bam 62384565348 BAM aligned CPTAC3 9db3be3b-8c75-466c-ab60-500840d012f6 54203145bb670d345c351add36400ab1 { 'aliquot_tag': 'ALQ_8ffc1778', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00872.WGS.N.hg38 C3N-00872 UCEC WGS blood_normal CPT0116330002 84ad92c7-50c4-478c-aee1-95dba53bbb7b_wgs_gdc_realn.bam 91136245838 BAM harmonized CPTAC3 1e62f45a-68a2-4194-b96f-9b5cd1851102 28d50179151da2108a80ac3b7d8d57b7 { 'aliquot_tag': 'ALQ_8ffc1778', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00872.WGS.T C3N-00872 UCEC WGS tumor CPT0116250007 CPT0116250007.WholeGenome.RP-1303.bam 56286050876 BAM aligned CPTAC3 7ed27d67-c059-4f23-9c98-c9a23e61303b b9f7e39e2c6b21e1812013db26a7c65a { 'aliquot_tag': 'ALQ_bb8ac5f2', 'gdc_sample_type': 'Primary Tumor' } @@ -23188,9 +25063,9 @@ C3N-00880.MethArray.Red.T C3N-00880 UCEC Methylation Array tumor CPT0078710010 2 C3N-00880.miRNA-Seq.T C3N-00880 UCEC miRNA-Seq tumor CPT0078710007 181119_UNC31-K00269_0165_AH27WCBBXY_TACAGC_S19_L005_R1_001.unaln.bam 212662511 BAM unaligned CPTAC3 61ae2220-a020-42b2-a8c0-570310627257 b5166ba2f5336590f3fcc45ab4fea10e { 'aliquot_tag': 'ALQ_9fec9418', 'gdc_sample_type': 'Primary Tumor' } C3N-00880.miRNA-Seq.T.hg38 C3N-00880 UCEC miRNA-Seq tumor CPT0078710007 c6f87cd6-014d-4b5d-bd43-c6560a2000a3_mirnaseq_gdc_realn.bam 236219763 BAM harmonized CPTAC3 349237b9-0a64-491c-b1d1-731a4cd22303 b2d7a90c611e28638235253f06178d89 { 'aliquot_tag': 'ALQ_9fec9418', 'gdc_sample_type': 'Primary Tumor' } C3N-00880.RNA-Seq.chimeric.T.hg38 C3N-00880 UCEC RNA-Seq tumor CPT0078710007 2f3291f6-acb3-447f-b456-10d3fc5a94c7.rna_seq.chimeric.gdc_realn.bam 220296908 BAM chimeric harmonized CPTAC3 998f2450-f7f6-419c-ae89-b1174bb8c6cd d9ca66411b2a52b1cc22563f5d268021 { 'aliquot_tag': 'ALQ_9fec9418', 'gdc_sample_type': 'Primary Tumor' } -C3N-00880.RNA-Seq.genomic.T.hg38 C3N-00880 UCEC RNA-Seq tumor CPT0078710007 2f3291f6-acb3-447f-b456-10d3fc5a94c7.rna_seq.genomic.gdc_realn.bam 8552625394 BAM genomic harmonized CPTAC3 819b9b18-ef54-4cbe-bb1c-15c972b65bdc cf6d2a7ac89eef79d0f584e07a567d99 { 'aliquot_tag': 'ALQ_9fec9418', 'gdc_sample_type': 'Primary Tumor' } -C3N-00880.RNA-Seq.R1_L002.T C3N-00880 UCEC RNA-Seq tumor CPT0078710007 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L002_R1_001.fastq.gz 4058753257 FASTQ R1_L002 unaligned CPTAC3 f0952653-8c23-4781-a477-c2ce76f9d1b6 34570876e7d63e1d08b81e0e597a9245 { 'aliquot_tag': 'ALQ_9fec9418', 'gdc_sample_type': 'Primary Tumor' } -C3N-00880.RNA-Seq.R2_L002.T C3N-00880 UCEC RNA-Seq tumor CPT0078710007 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L002_R2_001.fastq.gz 4421738132 FASTQ R2_L002 unaligned CPTAC3 6a2bd4f3-68fc-48f2-a604-db2c5a7b665b 9c1ccdbe48d30004544f40124a821569 { 'aliquot_tag': 'ALQ_9fec9418', 'gdc_sample_type': 'Primary Tumor' } +C3N-00880.RNA-Seq.genomic.T.hg38 C3N-00880 UCEC RNA-Seq tumor CPT0078710007 2f3291f6-acb3-447f-b456-10d3fc5a94c7.rna_seq.genomic.gdc_realn.bam 8552625394 BAM genomic harmonized CPTAC3 2ea9c9e8-c345-44fe-be3f-7c32f36e4e7e cf6d2a7ac89eef79d0f584e07a567d99 { 'aliquot_tag': 'ALQ_9fec9418', 'gdc_sample_type': 'Primary Tumor' } +C3N-00880.RNA-Seq.R1_L002.T C3N-00880 UCEC RNA-Seq tumor CPT0078710007 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L002_R1_001.fastq.gz 4058753257 FASTQ R1_L002 unaligned CPTAC3 f0952653-8c23-4781-a477-c2ce76f9d1b6 34570876e7d63e1d08b81e0e597a9245 { 'aliquot_tag': 'ALQ_9fec9418', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00880.RNA-Seq.R2_L002.T C3N-00880 UCEC RNA-Seq tumor CPT0078710007 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L002_R2_001.fastq.gz 4421738132 FASTQ R2_L002 unaligned CPTAC3 6a2bd4f3-68fc-48f2-a604-db2c5a7b665b 9c1ccdbe48d30004544f40124a821569 { 'aliquot_tag': 'ALQ_9fec9418', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-00880.RNA-Seq.transcriptome.T.hg38 C3N-00880 UCEC RNA-Seq tumor CPT0078710007 2f3291f6-acb3-447f-b456-10d3fc5a94c7.rna_seq.transcriptome.gdc_realn.bam 11295373053 BAM transcriptome harmonized CPTAC3 9ba9d8b5-4cd9-461f-ba44-fece814b3f77 353bfafff85e9640d2b0c2484dc6c3a8 { 'aliquot_tag': 'ALQ_9fec9418', 'gdc_sample_type': 'Primary Tumor' } C3N-00880.WGS.N C3N-00880 UCEC WGS blood_normal CPT0078790002 CPT0078790002.WholeGenome.RP-1303.bam 74618018102 BAM aligned CPTAC3 d54c5886-845a-4344-ad59-640aac4aa84d 4d2ffff54f31cde9466f842945e587d2 { 'aliquot_tag': 'ALQ_dff62b56', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00880.WGS.N.hg38 C3N-00880 UCEC WGS blood_normal CPT0078790002 d564a1a0-e99a-4998-8fa1-df8128379f65_gdc_realn.bam 109558122973 BAM harmonized CPTAC3 a3cc4371-a3ba-4bf9-83a8-944c42d63a5d 39102ab7d438c8155a5f6ac196ef66bd { 'aliquot_tag': 'ALQ_dff62b56', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23203,9 +25078,9 @@ C3N-00880.WXS.T.hg38 C3N-00880 UCEC WXS tumor CPT0078710010 90388559-98b6-4014-b C3N-00953.DUP_52fb2eb3.miRNA-Seq.T C3N-00953 CCRCC miRNA-Seq tumor CPT0065220006 201209_UNC32-K00270_0265_AHJ55WBBXY_CAGGCG_S10_L006_R1_001.unaln.bam 244489118 BAM unaligned CPTAC3 fba111ef-263b-47c5-8eea-c8226ea0b5fb 8a7dac69fa03243fc1731b89d7d6e944 { 'aliquot_tag': 'DUP_52fb2eb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00953.DUP_52fb2eb3.miRNA-Seq.T.hg38 C3N-00953 CCRCC miRNA-Seq tumor CPT0065220006 19ced899-9a31-465a-b7b9-41df57ad7762_mirnaseq_gdc_realn.bam 265894349 BAM harmonized CPTAC3 81f5b6e3-0ef4-4c56-8860-23f92f1d26c2 af4b517bddc58bd4ec5a3f6ead391650 { 'aliquot_tag': 'DUP_52fb2eb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00953.DUP_52fb2eb3.RNA-Seq.chimeric.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 2135e2ae-4afd-47df-947b-008e3adfa687.rna_seq.chimeric.gdc_realn.bam 327915679 BAM chimeric harmonized CPTAC3 0ba24d45-9a91-443c-857c-3cf44b69ea84 dbd757ebf8151fba11b2f93bcbe278e8 { 'aliquot_tag': 'DUP_52fb2eb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00953.DUP_52fb2eb3.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 2135e2ae-4afd-47df-947b-008e3adfa687.rna_seq.genomic.gdc_realn.bam 8157076537 BAM genomic harmonized CPTAC3 d918a508-d9af-458e-9a7f-8ee8ab6bfab7 0163a775b832604befbab533f7ce7a76 { 'aliquot_tag': 'DUP_52fb2eb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00953.DUP_52fb2eb3.RNA-Seq.R1_L006.T C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R1_001.fastq.gz 3671257257 FASTQ R1_L006 unaligned CPTAC3 532616de-67ac-459a-afeb-b3153dd4f685 f27ad4a237e8c1d44fc5974c458792d0 { 'aliquot_tag': 'DUP_52fb2eb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00953.DUP_52fb2eb3.RNA-Seq.R2_L006.T C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R2_001.fastq.gz 4359870205 FASTQ R2_L006 unaligned CPTAC3 570b6c64-408f-4ced-9426-d558d138f9a2 c25d9b3c8cf64843e715c77770002215 { 'aliquot_tag': 'DUP_52fb2eb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00953.DUP_52fb2eb3.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 2135e2ae-4afd-47df-947b-008e3adfa687.rna_seq.genomic.gdc_realn.bam 8157076537 BAM genomic harmonized CPTAC3 2329d250-f867-4bbe-8f7f-e25c76483b8d 0163a775b832604befbab533f7ce7a76 { 'aliquot_tag': 'DUP_52fb2eb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00953.DUP_52fb2eb3.RNA-Seq.R1_L006.T C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R1_001.fastq.gz 3671257257 FASTQ R1_L006 unaligned CPTAC3 532616de-67ac-459a-afeb-b3153dd4f685 f27ad4a237e8c1d44fc5974c458792d0 { 'aliquot_tag': 'DUP_52fb2eb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3N-00953.DUP_52fb2eb3.RNA-Seq.R2_L006.T C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R2_001.fastq.gz 4359870205 FASTQ R2_L006 unaligned CPTAC3 570b6c64-408f-4ced-9426-d558d138f9a2 c25d9b3c8cf64843e715c77770002215 { 'aliquot_tag': 'DUP_52fb2eb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3N-00953.DUP_52fb2eb3.RNA-Seq.transcriptome.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065220006 2135e2ae-4afd-47df-947b-008e3adfa687.rna_seq.transcriptome.gdc_realn.bam 9255053205 BAM transcriptome harmonized CPTAC3 a7ce1d90-cabc-4ac2-9712-234c2f3f587f e977cf29f9b639be64f61fcf9f4ae01c { 'aliquot_tag': 'DUP_52fb2eb3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00953.DUP_9b5d259f.MethArray.Green.T C3N-00953 CCRCC Methylation Array tumor CPT0065440009 204372030079_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 dc95ffa1-a37d-4a0a-bcea-97117d80f7f1 92c6a16903d681396eb175cacb9f0d66 { 'aliquot_tag': 'DUP_9b5d259f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00953.DUP_9b5d259f.MethArray.Red.T C3N-00953 CCRCC Methylation Array tumor CPT0065440009 204372030079_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 1014112e-9f81-4792-a507-89da52039f2c 79d7061616bf9ec7425a2fff4ef53cdd { 'aliquot_tag': 'DUP_9b5d259f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -23216,9 +25091,9 @@ C3N-00953.DUP_9b5d259f.WXS.T.hg38 C3N-00953 CCRCC WXS tumor CPT0065440009 baf79f C3N-00953.DUP_be2380e.miRNA-Seq.T C3N-00953 CCRCC miRNA-Seq tumor CPT0065440006 200526_UNC32-K00270_0248_BHH7WFBBXY_GCCAAT_S42_L005_R1_001.unaln.bam 242922238 BAM unaligned CPTAC3 cbd76193-7344-4a9e-aed4-4b72f0dd1092 248389b7e408cb7377e93a023373b6d1 { 'aliquot_tag': 'DUP_be2380e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00953.DUP_be2380e.miRNA-Seq.T.hg38 C3N-00953 CCRCC miRNA-Seq tumor CPT0065440006 d8700b66-5582-4fa4-9fe6-8d4ce0c5d1e2_mirnaseq_gdc_realn.bam 268478208 BAM harmonized CPTAC3 59b8e5b9-941a-4139-8131-a535795f9a00 dee7fe07c506be20107e4049a2244324 { 'aliquot_tag': 'DUP_be2380e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00953.DUP_be2380e.RNA-Seq.chimeric.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 048fe2dc-dbc4-4413-8565-b57b1b4539b3.rna_seq.chimeric.gdc_realn.bam 111658895 BAM chimeric harmonized CPTAC3 e33ceeed-7f49-4ead-93fd-9c7dd30cdd68 7842859339421c4199d446d20878141b { 'aliquot_tag': 'DUP_be2380e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00953.DUP_be2380e.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 048fe2dc-dbc4-4413-8565-b57b1b4539b3.rna_seq.genomic.gdc_realn.bam 7220140413 BAM genomic harmonized CPTAC3 8fc6dcac-932e-4069-9086-df393ff64dd5 7b0382995a1281db94753ad515ad8c20 { 'aliquot_tag': 'DUP_be2380e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00953.DUP_be2380e.RNA-Seq.R1_L005.T C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R1_001.fastq.gz 3361203837 FASTQ R1_L005 unaligned CPTAC3 f024b599-90cb-4640-a907-324ea7ef0a95 244dcce86bdb30114d5f9c2c24ef488b { 'aliquot_tag': 'DUP_be2380e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-00953.DUP_be2380e.RNA-Seq.R2_L005.T C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R2_001.fastq.gz 3902270374 FASTQ R2_L005 unaligned CPTAC3 0bd50e24-a6a0-4c2c-ab7b-8d212adbce91 af7b7958103319039b0e20038a2596c2 { 'aliquot_tag': 'DUP_be2380e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00953.DUP_be2380e.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 048fe2dc-dbc4-4413-8565-b57b1b4539b3.rna_seq.genomic.gdc_realn.bam 7220140413 BAM genomic harmonized CPTAC3 aaf2369d-ce14-44a9-9ccf-43ad2c788354 7b0382995a1281db94753ad515ad8c20 { 'aliquot_tag': 'DUP_be2380e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-00953.DUP_be2380e.RNA-Seq.R1_L005.T C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R1_001.fastq.gz 3361203837 FASTQ R1_L005 unaligned CPTAC3 f024b599-90cb-4640-a907-324ea7ef0a95 244dcce86bdb30114d5f9c2c24ef488b { 'aliquot_tag': 'DUP_be2380e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L005' } +C3N-00953.DUP_be2380e.RNA-Seq.R2_L005.T C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R2_001.fastq.gz 3902270374 FASTQ R2_L005 unaligned CPTAC3 0bd50e24-a6a0-4c2c-ab7b-8d212adbce91 af7b7958103319039b0e20038a2596c2 { 'aliquot_tag': 'DUP_be2380e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L005' } C3N-00953.DUP_be2380e.RNA-Seq.transcriptome.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065440006 048fe2dc-dbc4-4413-8565-b57b1b4539b3.rna_seq.transcriptome.gdc_realn.bam 9358608386 BAM transcriptome harmonized CPTAC3 d74ecc5c-fa7c-41a0-814f-0891c2341b9a 8143c4e1f8ba87059e8a9a791d6c75b0 { 'aliquot_tag': 'DUP_be2380e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00953.DUP_c2443322.MethArray.Green.T C3N-00953 CCRCC Methylation Array tumor CPT0065220009 204372030127_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 4fbe467a-f9ce-440d-949f-4470601b6778 bec0881098a464248c92ea4fca3fee31 { 'aliquot_tag': 'DUP_c2443322', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-00953.DUP_c2443322.MethArray.Red.T C3N-00953 CCRCC Methylation Array tumor CPT0065220009 204372030127_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 6014cf5a-7814-4eb5-b053-5c9b9dc4aa1f ba053948a18662f64c8194dd0e87909b { 'aliquot_tag': 'DUP_c2443322', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -23231,9 +25106,9 @@ C3N-00953.MethArray.Red.T C3N-00953 CCRCC Methylation Array tumor CPT0065430009 C3N-00953.miRNA-Seq.T C3N-00953 CCRCC miRNA-Seq tumor CPT0065430006 181119_UNC31-K00269_0165_AH27WCBBXY_TTAGGC_S27_L005_R1_001.unaln.bam 274368446 BAM unaligned CPTAC3 bc67f62c-cdac-4c8d-96a1-6bcc56556b59 802cb4dc4e0ee9c00a3e4692f5d20eee { 'aliquot_tag': 'ALQ_b9c2e41e', 'gdc_sample_type': 'Primary Tumor' } C3N-00953.miRNA-Seq.T.hg38 C3N-00953 CCRCC miRNA-Seq tumor CPT0065430006 9ec24e09-2d8f-44c4-85c5-b03d7641ebe9_mirnaseq_gdc_realn.bam 298301798 BAM harmonized CPTAC3 a8e6b3de-247e-4414-9bd0-307d47d08c42 8c49338dff346060a020f8bba4c6403b { 'aliquot_tag': 'ALQ_b9c2e41e', 'gdc_sample_type': 'Primary Tumor' } C3N-00953.RNA-Seq.chimeric.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 94940054-193e-4c21-9256-b93d9b48634d.rna_seq.chimeric.gdc_realn.bam 138344359 BAM chimeric harmonized CPTAC3 f59b0dfc-d32d-49ed-93ec-4180eef59d10 dd5096025d817dacbb69d4260af1eca9 { 'aliquot_tag': 'ALQ_b9c2e41e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00953.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 94940054-193e-4c21-9256-b93d9b48634d.rna_seq.genomic.gdc_realn.bam 9040447265 BAM genomic harmonized CPTAC3 8f170478-3309-4b02-8b80-3781e052310c b527b8a9df46d84cffae36f986517fba { 'aliquot_tag': 'ALQ_b9c2e41e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00953.RNA-Seq.R1_L007.T C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R1_001.fastq.gz 4660604210 FASTQ R1_L007 unaligned CPTAC3 fddb0068-8209-43fb-b1bb-45f70688ba24 0a914855f1a996078b6de3d7a194d339 { 'aliquot_tag': 'ALQ_b9c2e41e', 'gdc_sample_type': 'Primary Tumor' } -C3N-00953.RNA-Seq.R2_L007.T C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R2_001.fastq.gz 5067259916 FASTQ R2_L007 unaligned CPTAC3 9cec05f2-4b61-4862-bff8-4d0b9e01a47f c137ad77f4e4d7ee97a64716a5abc0b7 { 'aliquot_tag': 'ALQ_b9c2e41e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00953.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 94940054-193e-4c21-9256-b93d9b48634d.rna_seq.genomic.gdc_realn.bam 9040447265 BAM genomic harmonized CPTAC3 8f6e2370-0450-4e70-bd7d-e8c432090d17 b527b8a9df46d84cffae36f986517fba { 'aliquot_tag': 'ALQ_b9c2e41e', 'gdc_sample_type': 'Primary Tumor' } +C3N-00953.RNA-Seq.R1_L007.T C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R1_001.fastq.gz 4660604210 FASTQ R1_L007 unaligned CPTAC3 fddb0068-8209-43fb-b1bb-45f70688ba24 0a914855f1a996078b6de3d7a194d339 { 'aliquot_tag': 'ALQ_b9c2e41e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-00953.RNA-Seq.R2_L007.T C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R2_001.fastq.gz 5067259916 FASTQ R2_L007 unaligned CPTAC3 9cec05f2-4b61-4862-bff8-4d0b9e01a47f c137ad77f4e4d7ee97a64716a5abc0b7 { 'aliquot_tag': 'ALQ_b9c2e41e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-00953.RNA-Seq.transcriptome.T.hg38 C3N-00953 CCRCC RNA-Seq tumor CPT0065430006 94940054-193e-4c21-9256-b93d9b48634d.rna_seq.transcriptome.gdc_realn.bam 11558312163 BAM transcriptome harmonized CPTAC3 fc444489-061c-453d-87e4-6d858b41b377 0d4ff309bcdd6000001f4343157fa881 { 'aliquot_tag': 'ALQ_b9c2e41e', 'gdc_sample_type': 'Primary Tumor' } C3N-00953.WGS.N C3N-00953 CCRCC WGS blood_normal CPT0070680002 CPT0070680002.WholeGenome.RP-1303.bam 66782233531 BAM aligned CPTAC3 c1fc0f6e-0230-4af6-b344-1679d6405ae1 c481d3af84f3a29c8eb655bf6746647b { 'aliquot_tag': 'ALQ_1a259f24', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00953.WGS.N.hg38 C3N-00953 CCRCC WGS blood_normal CPT0070680002 c1eb9e6d-669b-4d1c-83c6-9710f4c80717_gdc_realn.bam 103070094683 BAM harmonized CPTAC3 6dc712f1-4606-47d3-8671-a62035b73e82 c0a9a28de767435c2ea2861ef5ca47b3 { 'aliquot_tag': 'ALQ_1a259f24', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23251,16 +25126,16 @@ C3N-00954.miRNA-Seq.A C3N-00954 PDA miRNA-Seq tissue_normal CPT0065100009 181108 C3N-00954.miRNA-Seq.A.hg38 C3N-00954 PDA miRNA-Seq tissue_normal CPT0065100009 1f14966f-789b-4626-892d-0e322b528aba_mirnaseq_gdc_realn.bam 251184535 BAM harmonized CPTAC3 d30019a6-032b-4c60-bf16-c701505b424f c13060e6109e97cf8b589628838f71d1 { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00954.miRNA-Seq.T C3N-00954 PDA miRNA-Seq tumor CPT0065080006 181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L001_R1_001.unaln.bam 251482663 BAM unaligned CPTAC3 2ae8c6c2-a871-4ad3-b04a-e30e8a3ceb17 d54577db885cc26c82d51859601c6d19 { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor' } C3N-00954.miRNA-Seq.T.hg38 C3N-00954 PDA miRNA-Seq tumor CPT0065080006 dfe002b1-bc33-480a-944f-f93a1be777ee_mirnaseq_gdc_realn.bam 278405547 BAM harmonized CPTAC3 8c9a4a5a-5fbc-4d3c-bd4b-60e5bf7e58ea 3305018d4b2d1d793acaaa60f41a633e { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor' } -C3N-00954.RNA-Seq.chimeric.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 dfac800b-7d07-49ab-9a3d-3854b0fb9bdb.rna_seq.chimeric.gdc_realn.bam 160939808 BAM chimeric harmonized CPTAC3 5eff0567-29e7-45d3-b7f9-260e6c79b10d 34870984cc57f122c862577869091a7e { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00954.RNA-Seq.chimeric.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 df7d3657-77e3-4a99-bb69-3035bf1ccf61.rna_seq.chimeric.gdc_realn.bam 55665979 BAM chimeric harmonized CPTAC3 41793d90-593f-481b-8f96-72f8b6e0dff7 c1f56c09c7a8c1fcb7031900de3bba9b { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor' } -C3N-00954.RNA-Seq.genomic.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 dfac800b-7d07-49ab-9a3d-3854b0fb9bdb.rna_seq.genomic.gdc_realn.bam 12068357739 BAM genomic harmonized CPTAC3 b5d78263-72cb-4914-83d3-97d4c7e59469 30db5c4475337ed27ea55d916a931349 { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00954.RNA-Seq.genomic.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 df7d3657-77e3-4a99-bb69-3035bf1ccf61.rna_seq.genomic.gdc_realn.bam 7536680276 BAM genomic harmonized CPTAC3 8489cfdf-7e98-4abf-b1f5-19db81214663 6d6c4d010b32456ab5eda79c8af9155e { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor' } -C3N-00954.RNA-Seq.R1_L002.T C3N-00954 PDA RNA-Seq tumor CPT0065080006 170823_UNC31-K00269_0076_BHLCTFBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3472421229 FASTQ R1_L002 unaligned CPTAC3 e6323501-1e7d-4e7d-9b40-f61d8dff75c8 c0b8fdc740ed6520d3fbb8c5ec107796 { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor' } -C3N-00954.RNA-Seq.R1_L008.A C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ACTGAT_S2_L008_R1_001.fastq.gz 5887497961 FASTQ R1_L008 unaligned CPTAC3 367a3e0d-14bc-4611-a9ef-7e0ad04447da 3d6a2766136e5a9ba7baf1b4a519414b { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00954.RNA-Seq.R2_L002.T C3N-00954 PDA RNA-Seq tumor CPT0065080006 170823_UNC31-K00269_0076_BHLCTFBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 3784810336 FASTQ R2_L002 unaligned CPTAC3 a7e74dfb-0fd4-48b1-b5ef-9019201b7a2a f7efd634d728fbba1517eeba2335f87f { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor' } -C3N-00954.RNA-Seq.R2_L008.A C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ACTGAT_S2_L008_R2_001.fastq.gz 6311998386 FASTQ R2_L008 unaligned CPTAC3 00fdc20d-e0f0-42f5-b1b7-bd214d8eaff8 90ab71dc5be38bca7bd30cc130ae7d63 { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00954.RNA-Seq.transcriptome.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 dfac800b-7d07-49ab-9a3d-3854b0fb9bdb.rna_seq.transcriptome.gdc_realn.bam 12015803810 BAM transcriptome harmonized CPTAC3 c4de236b-d1da-4ce4-a5cd-2179a0901774 97b0c5eb9d20543fc310f2114ebfc1de { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00954.RNA-Seq.transcriptome.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 df7d3657-77e3-4a99-bb69-3035bf1ccf61.rna_seq.transcriptome.gdc_realn.bam 8294873306 BAM transcriptome harmonized CPTAC3 0d62ebb9-4958-47bb-845e-c149d7e6ff58 be547fbf20c977e1345b44269ee27809 { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor' } +C3N-00954.RNA-Seq.chimeric.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 a36aeeac-67eb-4a1f-9cba-65ee5f10f805.rna_seq.chimeric.gdc_realn.bam 160906254 BAM chimeric harmonized CPTAC3 a24aab78-8d04-41c3-8db8-bc535d5aed86 1e41fc9839c6c996106e53c04e304a04 { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00954.RNA-Seq.chimeric.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 f45f0c3c-85e8-4007-9918-2feeb7b73637.rna_seq.chimeric.gdc_realn.bam 55655598 BAM chimeric harmonized CPTAC3 baa66fd2-f07e-4c4b-9431-e5066e5e5d68 b0f9ec7a39348a646d28cd53cd5fca1c { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor' } +C3N-00954.RNA-Seq.genomic.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 a36aeeac-67eb-4a1f-9cba-65ee5f10f805.rna_seq.genomic.gdc_realn.bam 12069965447 BAM genomic harmonized CPTAC3 44448d98-76db-41a2-8bd7-a080eef9ff9d d4ce827db4547ca92aaff7c2c62e4d05 { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00954.RNA-Seq.genomic.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 f45f0c3c-85e8-4007-9918-2feeb7b73637.rna_seq.genomic.gdc_realn.bam 7537681616 BAM genomic harmonized CPTAC3 ae8d9b19-27a0-40cc-a39f-d311e0985599 6ad8ad3a8c6ff0633a15d477f8fc9fab { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor' } +C3N-00954.RNA-Seq.R1_L002.T C3N-00954 PDA RNA-Seq tumor CPT0065080006 170823_UNC31-K00269_0076_BHLCTFBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3472421229 FASTQ R1_L002 unaligned CPTAC3 e6323501-1e7d-4e7d-9b40-f61d8dff75c8 c0b8fdc740ed6520d3fbb8c5ec107796 { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-00954.RNA-Seq.R1_L008.A C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ACTGAT_S2_L008_R1_001.fastq.gz 5887497961 FASTQ R1_L008 unaligned CPTAC3 367a3e0d-14bc-4611-a9ef-7e0ad04447da 3d6a2766136e5a9ba7baf1b4a519414b { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00954.RNA-Seq.R2_L002.T C3N-00954 PDA RNA-Seq tumor CPT0065080006 170823_UNC31-K00269_0076_BHLCTFBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 3784810336 FASTQ R2_L002 unaligned CPTAC3 a7e74dfb-0fd4-48b1-b5ef-9019201b7a2a f7efd634d728fbba1517eeba2335f87f { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-00954.RNA-Seq.R2_L008.A C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 180427_UNC31-K00269_0124_AHTVJ5BBXX_ACTGAT_S2_L008_R2_001.fastq.gz 6311998386 FASTQ R2_L008 unaligned CPTAC3 00fdc20d-e0f0-42f5-b1b7-bd214d8eaff8 90ab71dc5be38bca7bd30cc130ae7d63 { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-00954.RNA-Seq.transcriptome.A.hg38 C3N-00954 PDA RNA-Seq tissue_normal CPT0065100009 a36aeeac-67eb-4a1f-9cba-65ee5f10f805.rna_seq.transcriptome.gdc_realn.bam 13714869475 BAM transcriptome harmonized CPTAC3 6f0669d4-1b02-4e8b-8229-d97d27cf6ab6 4b62528f51bc74663a5fc2df968dbdee { 'aliquot_tag': 'ALQ_3e1012ec', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00954.RNA-Seq.transcriptome.T.hg38 C3N-00954 PDA RNA-Seq tumor CPT0065080006 f45f0c3c-85e8-4007-9918-2feeb7b73637.rna_seq.transcriptome.gdc_realn.bam 9401403320 BAM transcriptome harmonized CPTAC3 c1c6f4a0-34e1-403a-b879-ef76af493057 a4185d6faca912ff0613b4214c524845 { 'aliquot_tag': 'ALQ_55839719', 'gdc_sample_type': 'Primary Tumor' } C3N-00954.WGS.A C3N-00954 PDA WGS tissue_normal CPT0065100006 CPT0065100006.WholeGenome.RP-1303.bam 54697256827 BAM aligned CPTAC3 157047e3-ed9c-4920-8aac-d5e97fe669d0 5ce70c29f8e8ec61cbd878ed76896276 { 'aliquot_tag': 'ALQ_aeaf0f7d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00954.WGS.A.hg38 C3N-00954 PDA WGS tissue_normal CPT0065100006 de354132-ab9c-4621-b541-f7984ebb156e_wgs_gdc_realn.bam 79909132589 BAM harmonized CPTAC3 de47c75b-7cf9-4e0e-b30e-818dd7351e87 1bd3c3b2cfbf78f976d9ac76db23973e { 'aliquot_tag': 'ALQ_aeaf0f7d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00954.WGS.N C3N-00954 PDA WGS blood_normal CPT0070660002 CPT0070660002.WholeGenome.RP-1303.bam 76867918749 BAM aligned CPTAC3 ff2840a5-0755-447d-a56e-ea73da42499a fbd7bb0d303e11d3645ab8e9fe39ab56 { 'aliquot_tag': 'ALQ_a5152145', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23288,9 +25163,9 @@ C3N-00957.MethArray.Red.A C3N-00957 PDA Methylation Array tissue_normal CPT00897 C3N-00957.miRNA-Seq.T C3N-00957 PDA miRNA-Seq tumor CPT0089720006 180724_UNC32-K00270_0106_BHWK3MBBXX_CAACTA_S5_L007_R1_001.unaln.bam 264781864 BAM unaligned CPTAC3 998c8a92-92c9-4656-9368-30f7752bdc7c 97573249e020dec33843dbdfbe57a161 { 'aliquot_tag': 'ALQ_d01cc746', 'gdc_sample_type': 'Primary Tumor' } C3N-00957.miRNA-Seq.T.hg38 C3N-00957 PDA miRNA-Seq tumor CPT0089720006 94568398-b852-4380-b8d2-5be89c73b351_mirnaseq_gdc_realn.bam 285819047 BAM harmonized CPTAC3 d83bf88a-b4f3-4e27-987c-ad38affb09ad 1dbe84040a571e631690fcba12001553 { 'aliquot_tag': 'ALQ_d01cc746', 'gdc_sample_type': 'Primary Tumor' } C3N-00957.RNA-Seq.chimeric.T.hg38 C3N-00957 PDA RNA-Seq tumor CPT0089720006 9bf92bb2-39dd-4e19-99d1-8ca95aee1e5f.rna_seq.chimeric.gdc_realn.bam 38434638 BAM chimeric harmonized CPTAC3 3064efaf-0547-4d92-9f68-76d5c0876d61 03e3cfb4d280763baa3db038b173d20a { 'aliquot_tag': 'ALQ_d01cc746', 'gdc_sample_type': 'Primary Tumor' } -C3N-00957.RNA-Seq.genomic.T.hg38 C3N-00957 PDA RNA-Seq tumor CPT0089720006 9bf92bb2-39dd-4e19-99d1-8ca95aee1e5f.rna_seq.genomic.gdc_realn.bam 9407212831 BAM genomic harmonized CPTAC3 1a6735f2-be07-435d-bd6e-43eeff9f3167 ab8eec257c3a1a0446450ac58b1866ec { 'aliquot_tag': 'ALQ_d01cc746', 'gdc_sample_type': 'Primary Tumor' } -C3N-00957.RNA-Seq.R1_L006.T C3N-00957 PDA RNA-Seq tumor CPT0089720006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L006_R1_001.fastq.gz 3911560268 FASTQ R1_L006 unaligned CPTAC3 e9fa0d97-bade-42eb-b268-673f13619093 32fa47e32cf767c4c49e7346f3df4dd1 { 'aliquot_tag': 'ALQ_d01cc746', 'gdc_sample_type': 'Primary Tumor' } -C3N-00957.RNA-Seq.R2_L006.T C3N-00957 PDA RNA-Seq tumor CPT0089720006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L006_R2_001.fastq.gz 4361482381 FASTQ R2_L006 unaligned CPTAC3 3320297a-0634-4b50-921b-d2619774fab7 0f70fece8ff5a8e3460b5af19b7ebaa2 { 'aliquot_tag': 'ALQ_d01cc746', 'gdc_sample_type': 'Primary Tumor' } +C3N-00957.RNA-Seq.genomic.T.hg38 C3N-00957 PDA RNA-Seq tumor CPT0089720006 9bf92bb2-39dd-4e19-99d1-8ca95aee1e5f.rna_seq.genomic.gdc_realn.bam 9407212831 BAM genomic harmonized CPTAC3 32b9eb2a-7525-404d-bf08-987eeb117242 ab8eec257c3a1a0446450ac58b1866ec { 'aliquot_tag': 'ALQ_d01cc746', 'gdc_sample_type': 'Primary Tumor' } +C3N-00957.RNA-Seq.R1_L006.T C3N-00957 PDA RNA-Seq tumor CPT0089720006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L006_R1_001.fastq.gz 3911560268 FASTQ R1_L006 unaligned CPTAC3 e9fa0d97-bade-42eb-b268-673f13619093 32fa47e32cf767c4c49e7346f3df4dd1 { 'aliquot_tag': 'ALQ_d01cc746', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-00957.RNA-Seq.R2_L006.T C3N-00957 PDA RNA-Seq tumor CPT0089720006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L006_R2_001.fastq.gz 4361482381 FASTQ R2_L006 unaligned CPTAC3 3320297a-0634-4b50-921b-d2619774fab7 0f70fece8ff5a8e3460b5af19b7ebaa2 { 'aliquot_tag': 'ALQ_d01cc746', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-00957.RNA-Seq.transcriptome.T.hg38 C3N-00957 PDA RNA-Seq tumor CPT0089720006 9bf92bb2-39dd-4e19-99d1-8ca95aee1e5f.rna_seq.transcriptome.gdc_realn.bam 10235594000 BAM transcriptome harmonized CPTAC3 27520bb6-62f1-4abb-894f-49688c6ceab2 22db5a93f2765ddd0c6da9c47d1c8dae { 'aliquot_tag': 'ALQ_d01cc746', 'gdc_sample_type': 'Primary Tumor' } C3N-00957.WGS.A C3N-00957 PDA WGS tissue_normal CPT0089750007 CPT0089750007.WholeGenome.RP-1303.bam 56148012836 BAM aligned CPTAC3 23f21231-9f0c-412f-b03f-987d7d583aba 2a7b76fd359d08996a11fcb4efa7894b { 'aliquot_tag': 'ALQ_153b2bc0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00957.WGS.A.hg38 C3N-00957 PDA WGS tissue_normal CPT0089750007 64db149d-cd1f-43a2-bcdc-1765ac672776_wgs_gdc_realn.bam 82332167189 BAM harmonized CPTAC3 dc59cd3e-6b2f-4427-a800-bb0ce2129f01 de098e7769517c67457149b1afc4374d { 'aliquot_tag': 'ALQ_153b2bc0', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23310,16 +25185,16 @@ C3N-00958.miRNA-Seq.A C3N-00958 CCRCC miRNA-Seq tissue_normal CPT0384760009 2101 C3N-00958.miRNA-Seq.A.hg38 C3N-00958 CCRCC miRNA-Seq tissue_normal CPT0384760009 fd0b5920-c0fe-409c-9514-fad860d2c5d4_mirnaseq_gdc_realn.bam 326468136 BAM harmonized CPTAC3 e93777c0-2db0-43a9-88d5-817278309c48 d7f5998749d52b37b0eefb3ac9c971f4 { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00958.miRNA-Seq.T C3N-00958 CCRCC miRNA-Seq tumor CPT0384730006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTGGCC_S18_L001_R1_001.unaln.bam 231829224 BAM unaligned CPTAC3 ee5b5b30-92f6-412b-a45a-c85cc1e28ba1 f1a8cf57f7da74b39c2b38999ad71957 { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor' } C3N-00958.miRNA-Seq.T.hg38 C3N-00958 CCRCC miRNA-Seq tumor CPT0384730006 701e7361-8bfa-44c3-84bc-cefd09a71037_mirnaseq_gdc_realn.bam 249318853 BAM harmonized CPTAC3 1f1a8a0f-f23a-47ad-883f-700b50eb0129 4e4f4bfec53bb9da8bdced13f5378968 { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00958.RNA-Seq.chimeric.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 c5c2651a-9571-42b9-96a5-e32543c2bba3.rna_seq.chimeric.gdc_realn.bam 406372318 BAM chimeric harmonized CPTAC3 16f71860-8981-4b91-a963-004d08b3b722 f91327a8cf6c17932e663334e3f1de57 { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00958.RNA-Seq.chimeric.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 60a1367e-cd00-4b86-bc6d-7a171965ec61.rna_seq.chimeric.gdc_realn.bam 354518176 BAM chimeric harmonized CPTAC3 667217c5-45a9-4992-a05d-1f93cc314ae5 b78a11d54a7cdfe7133f922b49f2d26b { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00958.RNA-Seq.genomic.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 c5c2651a-9571-42b9-96a5-e32543c2bba3.rna_seq.genomic.gdc_realn.bam 9705724637 BAM genomic harmonized CPTAC3 99b28178-1b53-4ed3-9052-ec387bba3010 666bb65831694edbb6f5657e84b339fd { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00958.RNA-Seq.genomic.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 60a1367e-cd00-4b86-bc6d-7a171965ec61.rna_seq.genomic.gdc_realn.bam 7087535262 BAM genomic harmonized CPTAC3 95783159-c016-4b91-bbdf-c2996c5e98d9 8dd3c112367236023930ec3be78c62fb { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00958.RNA-Seq.R1_L005.A C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 210105_UNC32-K00270_0268_AHK7HMBBXY_AACAGGTT-ATACCAAG_S14_L005_R1_001.fastq.gz 4609680825 FASTQ R1_L005 unaligned CPTAC3 e5b55cfb-c53e-4b95-bbf1-b60345ff71cf 69f4a3c8aadc666396aeae993b5227ad { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00958.RNA-Seq.R1_L005.T C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 210105_UNC32-K00270_0269_BHKN5MBBXY_GCACGGAC-GTCTCGCA_S19_L005_R1_001.fastq.gz 3338074856 FASTQ R1_L005 unaligned CPTAC3 248ac505-2412-46ed-ac68-0f3cc4e95a28 3ff6251b9bff97a0bca885025ed5240e { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00958.RNA-Seq.R2_L005.A C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 210105_UNC32-K00270_0268_AHK7HMBBXY_AACAGGTT-ATACCAAG_S14_L005_R2_001.fastq.gz 5038662955 FASTQ R2_L005 unaligned CPTAC3 a2f5c1ad-253b-4182-a13e-5f5b196a9c78 abf3c483e912fde9010f02de5684c896 { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00958.RNA-Seq.R2_L005.T C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 210105_UNC32-K00270_0269_BHKN5MBBXY_GCACGGAC-GTCTCGCA_S19_L005_R2_001.fastq.gz 3802566466 FASTQ R2_L005 unaligned CPTAC3 d4aa189b-410b-4f58-834e-1f3cd6e62ed6 cdf7798da50f8d249905edbfba5f0063 { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-00958.RNA-Seq.transcriptome.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 c5c2651a-9571-42b9-96a5-e32543c2bba3.rna_seq.transcriptome.gdc_realn.bam 9657008969 BAM transcriptome harmonized CPTAC3 ae43e458-ce6c-49cd-b211-31454edca016 482307fb90aeababf63e33cc4504316c { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00958.RNA-Seq.transcriptome.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 60a1367e-cd00-4b86-bc6d-7a171965ec61.rna_seq.transcriptome.gdc_realn.bam 7573891181 BAM transcriptome harmonized CPTAC3 4fe42622-fa69-41c8-8323-e5d6f847ad64 cd4282b90806b18a0b2d84815a54d612 { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00958.RNA-Seq.chimeric.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 33be0ad1-6e17-45ab-8577-cecbe1e14f5a.rna_seq.chimeric.gdc_realn.bam 406414048 BAM chimeric harmonized CPTAC3 01579f9d-8d6d-47b5-95b2-b96aa7ffa09a 018dfac89f0888941e61e23a503293cf { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00958.RNA-Seq.chimeric.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 b64e718b-04d5-4001-9017-26acf35d2a41.rna_seq.chimeric.gdc_realn.bam 354554705 BAM chimeric harmonized CPTAC3 eb4fee32-453f-4095-b2bd-39978030a442 6dea2039df2ce934a7a2f3a9d0788601 { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00958.RNA-Seq.genomic.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 33be0ad1-6e17-45ab-8577-cecbe1e14f5a.rna_seq.genomic.gdc_realn.bam 9712596117 BAM genomic harmonized CPTAC3 9f05bc72-82af-406a-9971-513ac864b894 7fd1754cd6c4ea63560ae52aae40f423 { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00958.RNA-Seq.genomic.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 b64e718b-04d5-4001-9017-26acf35d2a41.rna_seq.genomic.gdc_realn.bam 7092949844 BAM genomic harmonized CPTAC3 42070ca2-797b-4f58-95db-a4dc2a85df63 76983ac0523dc6cd98fcd6ca60dd4094 { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor' } +C3N-00958.RNA-Seq.R1_L005.A C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 210105_UNC32-K00270_0268_AHK7HMBBXY_AACAGGTT-ATACCAAG_S14_L005_R1_001.fastq.gz 4609680825 FASTQ R1_L005 unaligned CPTAC3 e5b55cfb-c53e-4b95-bbf1-b60345ff71cf 69f4a3c8aadc666396aeae993b5227ad { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-00958.RNA-Seq.R1_L005.T C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 210105_UNC32-K00270_0269_BHKN5MBBXY_GCACGGAC-GTCTCGCA_S19_L005_R1_001.fastq.gz 3338074856 FASTQ R1_L005 unaligned CPTAC3 248ac505-2412-46ed-ac68-0f3cc4e95a28 3ff6251b9bff97a0bca885025ed5240e { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-00958.RNA-Seq.R2_L005.A C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 210105_UNC32-K00270_0268_AHK7HMBBXY_AACAGGTT-ATACCAAG_S14_L005_R2_001.fastq.gz 5038662955 FASTQ R2_L005 unaligned CPTAC3 a2f5c1ad-253b-4182-a13e-5f5b196a9c78 abf3c483e912fde9010f02de5684c896 { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-00958.RNA-Seq.R2_L005.T C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 210105_UNC32-K00270_0269_BHKN5MBBXY_GCACGGAC-GTCTCGCA_S19_L005_R2_001.fastq.gz 3802566466 FASTQ R2_L005 unaligned CPTAC3 d4aa189b-410b-4f58-834e-1f3cd6e62ed6 cdf7798da50f8d249905edbfba5f0063 { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-00958.RNA-Seq.transcriptome.A.hg38 C3N-00958 CCRCC RNA-Seq tissue_normal CPT0384760009 33be0ad1-6e17-45ab-8577-cecbe1e14f5a.rna_seq.transcriptome.gdc_realn.bam 11068117281 BAM transcriptome harmonized CPTAC3 017eee61-551e-4912-9a2a-2bbf7288a37a 4cf456afada9bb9fb9d1ee81fd5f4b2f { 'aliquot_tag': 'ALQ_ed792112', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00958.RNA-Seq.transcriptome.T.hg38 C3N-00958 CCRCC RNA-Seq tumor CPT0384730006 b64e718b-04d5-4001-9017-26acf35d2a41.rna_seq.transcriptome.gdc_realn.bam 8684772264 BAM transcriptome harmonized CPTAC3 d0f6c388-b7d7-44cf-8032-9c60cfb3534f 0e572387907525824d2416c773e3de6d { 'aliquot_tag': 'ALQ_b526b3f3', 'gdc_sample_type': 'Primary Tumor' } C3N-00958.WGS.N C3N-00958 CCRCC WGS blood_normal CPT0385460002 CPT0385460002.WholeGenome.RP-2158.bam 28482936401 BAM aligned CPTAC3 bd01bdf4-aa5e-4692-84d8-805c1c150ea6 d9c073f52058eb2c0524680b745d21fe { 'aliquot_tag': 'ALQ_5a488180', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00958.WGS.N.hg38 C3N-00958 CCRCC WGS blood_normal CPT0385460002 e2813bc9-1b08-47b5-9cd0-62ee378b28e5_wgs_gdc_realn.bam 86213244684 BAM harmonized CPTAC3 125f9e07-0b01-46f0-8c7b-190eee3598bc f16ef3cdbe51585ded77b20c486f7c25 { 'aliquot_tag': 'ALQ_5a488180', 'gdc_sample_type': 'Blood Derived Normal' } C3N-00958.WGS.T C3N-00958 CCRCC WGS tumor CPT0384730009 CPT0384730009.WholeGenome.RP-2158.bam 19627147137 BAM aligned CPTAC3 3b0c06cf-9208-412c-9e9a-61c73f3d1556 59f53f023e6b995d90806796a41861cf { 'aliquot_tag': 'ALQ_2599ae62', 'gdc_sample_type': 'Primary Tumor' } @@ -23340,12 +25215,12 @@ C3N-00959.miRNA-Seq.T C3N-00959 LUAD miRNA-Seq tumor CPT0079830006 181012_UNC32- C3N-00959.miRNA-Seq.T.hg38 C3N-00959 LUAD miRNA-Seq tumor CPT0079830006 6a83ae63-0905-4f0a-93bf-7c621fbe54cf_mirnaseq_gdc_realn.bam 244399662 BAM harmonized CPTAC3 ab5c3d99-4b61-45bb-a81f-100b3dc53522 798fc9a7880b54005d9c219ca7ea53fb { 'aliquot_tag': 'ALQ_c50a4e8f', 'gdc_sample_type': 'Primary Tumor' } C3N-00959.RNA-Seq.chimeric.A.hg38 C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 aa0b15b0-82ea-4275-8674-141d4e3bff68.rna_seq.chimeric.gdc_realn.bam 76478717 BAM chimeric harmonized CPTAC3 d5f722d6-ec77-430f-a091-5d578b7c1ff3 14edf0e16671ce81c109321cf324336c { 'aliquot_tag': 'ALQ_d343ea95', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00959.RNA-Seq.chimeric.T.hg38 C3N-00959 LUAD RNA-Seq tumor CPT0079830006 13c91b65-0cba-4159-9545-375026955f20.rna_seq.chimeric.gdc_realn.bam 46175931 BAM chimeric harmonized CPTAC3 8b4d0c1a-2549-4e39-9777-1a6052927c46 c0b118040adc7e3a48ab98c675cc9f4a { 'aliquot_tag': 'ALQ_c50a4e8f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00959.RNA-Seq.genomic.A.hg38 C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 aa0b15b0-82ea-4275-8674-141d4e3bff68.rna_seq.genomic.gdc_realn.bam 8129045978 BAM genomic harmonized CPTAC3 9c8f255f-0e70-4a3b-9499-3e7a22df279f da96f1d7e2345ad407e2adcc0205e223 { 'aliquot_tag': 'ALQ_d343ea95', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00959.RNA-Seq.genomic.A.hg38 C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 aa0b15b0-82ea-4275-8674-141d4e3bff68.rna_seq.genomic.gdc_realn.bam 8129045978 BAM genomic harmonized CPTAC3 745652ec-8a6f-4860-893b-3423e7a9b9d3 da96f1d7e2345ad407e2adcc0205e223 { 'aliquot_tag': 'ALQ_d343ea95', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00959.RNA-Seq.genomic.T.hg38 C3N-00959 LUAD RNA-Seq tumor CPT0079830006 13c91b65-0cba-4159-9545-375026955f20.rna_seq.genomic.gdc_realn.bam 8431579276 BAM genomic harmonized CPTAC3 2f6d6bf2-26ac-487e-b59b-6e7c55345d1b 9698c7444e58658c217ee816517b6f5b { 'aliquot_tag': 'ALQ_c50a4e8f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00959.RNA-Seq.R1_L004.T C3N-00959 LUAD RNA-Seq tumor CPT0079830006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 3935302587 FASTQ R1_L004 unaligned CPTAC3 9b39328d-4e48-4d68-94c6-5c3e83d92a65 736b36f83926751cbbf9db168502370c { 'aliquot_tag': 'ALQ_c50a4e8f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00959.RNA-Seq.R1_L008.A C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 180103_UNC31-K00269_0105_AHNFGGBBXX_CTTGTA_S78_L008_R1_001.fastq.gz 4020554061 FASTQ R1_L008 unaligned CPTAC3 778ac7ff-a6e3-4083-9c0f-8d8b497c56aa eb20668f3adb0af0ce3977b019bda7a7 { 'aliquot_tag': 'ALQ_d343ea95', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-00959.RNA-Seq.R2_L004.T C3N-00959 LUAD RNA-Seq tumor CPT0079830006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4269685926 FASTQ R2_L004 unaligned CPTAC3 a68b8948-3bf6-4130-a106-6c766696f6c3 712fa2d1a36fe83056f6779a247d0cc3 { 'aliquot_tag': 'ALQ_c50a4e8f', 'gdc_sample_type': 'Primary Tumor' } -C3N-00959.RNA-Seq.R2_L008.A C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 180103_UNC31-K00269_0105_AHNFGGBBXX_CTTGTA_S78_L008_R2_001.fastq.gz 4342676725 FASTQ R2_L008 unaligned CPTAC3 60953128-c2f1-471f-8b70-216b9446b839 717886200e2bd4719b63238583a4f05c { 'aliquot_tag': 'ALQ_d343ea95', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-00959.RNA-Seq.R1_L004.T C3N-00959 LUAD RNA-Seq tumor CPT0079830006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 3935302587 FASTQ R1_L004 unaligned CPTAC3 9b39328d-4e48-4d68-94c6-5c3e83d92a65 736b36f83926751cbbf9db168502370c { 'aliquot_tag': 'ALQ_c50a4e8f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-00959.RNA-Seq.R1_L008.A C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 180103_UNC31-K00269_0105_AHNFGGBBXX_CTTGTA_S78_L008_R1_001.fastq.gz 4020554061 FASTQ R1_L008 unaligned CPTAC3 778ac7ff-a6e3-4083-9c0f-8d8b497c56aa eb20668f3adb0af0ce3977b019bda7a7 { 'aliquot_tag': 'ALQ_d343ea95', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-00959.RNA-Seq.R2_L004.T C3N-00959 LUAD RNA-Seq tumor CPT0079830006 170906_UNC32-K00270_0058_BHLJ7FBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4269685926 FASTQ R2_L004 unaligned CPTAC3 a68b8948-3bf6-4130-a106-6c766696f6c3 712fa2d1a36fe83056f6779a247d0cc3 { 'aliquot_tag': 'ALQ_c50a4e8f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-00959.RNA-Seq.R2_L008.A C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 180103_UNC31-K00269_0105_AHNFGGBBXX_CTTGTA_S78_L008_R2_001.fastq.gz 4342676725 FASTQ R2_L008 unaligned CPTAC3 60953128-c2f1-471f-8b70-216b9446b839 717886200e2bd4719b63238583a4f05c { 'aliquot_tag': 'ALQ_d343ea95', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-00959.RNA-Seq.transcriptome.A.hg38 C3N-00959 LUAD RNA-Seq tissue_normal CPT0079850005 aa0b15b0-82ea-4275-8674-141d4e3bff68.rna_seq.transcriptome.gdc_realn.bam 10335177707 BAM transcriptome harmonized CPTAC3 90b6e280-c8ee-4a9c-932f-35241b1c8713 6c25b5828493ea18e4a3cd6918728258 { 'aliquot_tag': 'ALQ_d343ea95', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-00959.RNA-Seq.transcriptome.T.hg38 C3N-00959 LUAD RNA-Seq tumor CPT0079830006 13c91b65-0cba-4159-9545-375026955f20.rna_seq.transcriptome.gdc_realn.bam 10459278833 BAM transcriptome harmonized CPTAC3 479062e4-85bf-438e-a0bc-0f3601137c93 db56e9882e554c7ab3eec55ddcc42a06 { 'aliquot_tag': 'ALQ_c50a4e8f', 'gdc_sample_type': 'Primary Tumor' } C3N-00959.WGS.A C3N-00959 LUAD WGS tissue_normal CPT0079850008 CPT0079850008.WholeGenome.RP-1303.bam 58614808767 BAM aligned CPTAC3 f73ba9f6-4df2-4e25-aa04-54a036ac167d 0129f25238c17b193f126465c05090cc { 'aliquot_tag': 'ALQ_adf29628', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23364,11 +25239,11 @@ C3N-01001.MethArray.Green.T C3N-01001 UCEC Methylation Array tumor CPT0078880009 C3N-01001.MethArray.Red.T C3N-01001 UCEC Methylation Array tumor CPT0078880009 202178770109_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 23c4b5fe-2133-45a1-ac9f-a6b5b7d69330 6d34233a836fc0204e6c5f99a0e839de { 'aliquot_tag': 'ALQ_841269bb', 'gdc_sample_type': 'Primary Tumor' } C3N-01001.miRNA-Seq.T C3N-01001 UCEC miRNA-Seq tumor CPT0078880006 181012_UNC32-K00270_0124_AH223CBBXY_TCCCGA_S19_L008_R1_001.unaln.bam 213465454 BAM unaligned CPTAC3 48bf04f3-834d-40d2-9c87-eed948e7fb7f 83fbd9a2882aefd2e5431444df5e3d57 { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor' } C3N-01001.miRNA-Seq.T.hg38 C3N-01001 UCEC miRNA-Seq tumor CPT0078880006 2a1b3ac8-420d-4636-9c8b-2d2524d9a5eb_mirnaseq_gdc_realn.bam 237998908 BAM harmonized CPTAC3 5ef29c7e-8fbb-40bd-9699-1ec95c09c754 c5d187832a0297220ef6d3a1451c1d66 { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01001.RNA-Seq.chimeric.T.hg38 C3N-01001 UCEC RNA-Seq tumor CPT0078880006 e6017f9b-f183-4c11-910b-01abea3a5dbf.rna_seq.chimeric.gdc_realn.bam 115551584 BAM chimeric harmonized CPTAC3 44669d8f-edf0-4bd9-9fad-9d80c069d8d5 fad372093c9283103ec191917298de4b { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01001.RNA-Seq.genomic.T.hg38 C3N-01001 UCEC RNA-Seq tumor CPT0078880006 e6017f9b-f183-4c11-910b-01abea3a5dbf.rna_seq.genomic.gdc_realn.bam 7333350356 BAM genomic harmonized CPTAC3 ae944614-b406-41f6-97ed-b6c567f42672 e1a741a5a5aaaeb66c5ad94bb54814ab { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01001.RNA-Seq.R1_L002.T C3N-01001 UCEC RNA-Seq tumor CPT0078880006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L002_R1_001.fastq.gz 3693102931 FASTQ R1_L002 unaligned CPTAC3 f8c5ac84-6343-4a3c-9dcb-a04b0e23bb62 294129d3d0a2dd68ea822a5ae97ae913 { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01001.RNA-Seq.R2_L002.T C3N-01001 UCEC RNA-Seq tumor CPT0078880006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L002_R2_001.fastq.gz 3987944999 FASTQ R2_L002 unaligned CPTAC3 e612b542-1d0e-45ee-84b8-60d39b004a6c 833e1ed42c26f9a87c227132f475001b { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01001.RNA-Seq.transcriptome.T.hg38 C3N-01001 UCEC RNA-Seq tumor CPT0078880006 e6017f9b-f183-4c11-910b-01abea3a5dbf.rna_seq.transcriptome.gdc_realn.bam 10839131419 BAM transcriptome harmonized CPTAC3 a5004f08-e1ee-4360-89f9-b2db9e6681d0 4464c21c6287cc70799c161073fa26c5 { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01001.RNA-Seq.chimeric.T.hg38 C3N-01001 UCEC RNA-Seq tumor CPT0078880006 db35df03-47f7-4d54-9532-b2802c8792c6.rna_seq.chimeric.gdc_realn.bam 115537755 BAM chimeric harmonized CPTAC3 be5d0c13-651e-462c-b9dd-de27f02e06c7 e3cdec552237fccc28d76d2ee97f6e14 { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01001.RNA-Seq.genomic.T.hg38 C3N-01001 UCEC RNA-Seq tumor CPT0078880006 db35df03-47f7-4d54-9532-b2802c8792c6.rna_seq.genomic.gdc_realn.bam 7334165676 BAM genomic harmonized CPTAC3 dacfd6fb-6294-4c22-96ec-fadbdc38153e 737185db05096da31693a6fe3c0880fa { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01001.RNA-Seq.R1_L002.T C3N-01001 UCEC RNA-Seq tumor CPT0078880006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L002_R1_001.fastq.gz 3693102931 FASTQ R1_L002 unaligned CPTAC3 f8c5ac84-6343-4a3c-9dcb-a04b0e23bb62 294129d3d0a2dd68ea822a5ae97ae913 { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01001.RNA-Seq.R2_L002.T C3N-01001 UCEC RNA-Seq tumor CPT0078880006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L002_R2_001.fastq.gz 3987944999 FASTQ R2_L002 unaligned CPTAC3 e612b542-1d0e-45ee-84b8-60d39b004a6c 833e1ed42c26f9a87c227132f475001b { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01001.RNA-Seq.transcriptome.T.hg38 C3N-01001 UCEC RNA-Seq tumor CPT0078880006 db35df03-47f7-4d54-9532-b2802c8792c6.rna_seq.transcriptome.gdc_realn.bam 12477852145 BAM transcriptome harmonized CPTAC3 3fa8c613-8d4a-4d56-a643-65b27e612e6a 637484d0780d74bbd0f9bd0a934be86a { 'aliquot_tag': 'ALQ_14ad742a', 'gdc_sample_type': 'Primary Tumor' } C3N-01001.WGS.N C3N-01001 UCEC WGS blood_normal CPT0078920002 CPT0078920002.WholeGenome.RP-1303.bam 74151600707 BAM aligned CPTAC3 43f32921-afd0-4a44-9ad1-36b79a370de6 f5622732a5fcb2e4a5dad634b4e32d1a { 'aliquot_tag': 'ALQ_922c7b37', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01001.WGS.N.hg38 C3N-01001 UCEC WGS blood_normal CPT0078920002 d02e9e05-81d1-4fa8-a227-ca3cec105ba9_gdc_realn.bam 108834310807 BAM harmonized CPTAC3 01c15e02-acbc-49f1-b489-5e171548b0e8 c67bde545f8f05bbd28acd1b06bf3239 { 'aliquot_tag': 'ALQ_922c7b37', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01001.WGS.T C3N-01001 UCEC WGS tumor CPT0078880009 CPT0078880009.WholeGenome.RP-1303.bam 85049399428 BAM aligned CPTAC3 dd02866a-341f-4989-bbfc-37dce887e2bb 0e022a3edeb46175e250a4bdf4866eab { 'aliquot_tag': 'ALQ_841269bb', 'gdc_sample_type': 'Primary Tumor' } @@ -23385,16 +25260,19 @@ C3N-01003.miRNA-Seq.T C3N-01003 UCEC miRNA-Seq tumor CPT0078610006 181012_UNC32- C3N-01003.miRNA-Seq.T.hg38 C3N-01003 UCEC miRNA-Seq tumor CPT0078610006 1003e681-643b-42c5-85e3-c152b7b4115a_mirnaseq_gdc_realn.bam 282386712 BAM harmonized CPTAC3 3f93a39a-ee7b-4195-9a23-d4550627dab7 78c829f4136cdb0327999756b64d7589 { 'aliquot_tag': 'ALQ_23b7772b', 'gdc_sample_type': 'Primary Tumor' } C3N-01003.RNA-Seq.chimeric.A.hg38 C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 1a04cf49-313e-4bbf-9038-dbff2ed48946.rna_seq.chimeric.gdc_realn.bam 96849608 BAM chimeric harmonized CPTAC3 5e9c9a05-ae1b-4cf4-ad55-ce2daf99bb3c 9094e9516c459b9d21aea901da545484 { 'aliquot_tag': 'ALQ_8a196cd7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01003.RNA-Seq.chimeric.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0078610006 f7df03a1-eb47-49fc-b2ad-30a7dd89e77c.rna_seq.chimeric.gdc_realn.bam 121238198 BAM chimeric harmonized CPTAC3 c656d5e5-9276-4933-b4b0-22776d88652f b62160873c6c1cf3ce83771074e6c98e { 'aliquot_tag': 'ALQ_23b7772b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01003.RNA-Seq.genomic.A.hg38 C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 1a04cf49-313e-4bbf-9038-dbff2ed48946.rna_seq.genomic.gdc_realn.bam 7381551183 BAM genomic harmonized CPTAC3 c534c891-0c99-4bc5-a9ba-1c38023c7725 361103a3d28d2e7e671f324b6ad6250f { 'aliquot_tag': 'ALQ_8a196cd7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01003.RNA-Seq.genomic.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0078610006 f7df03a1-eb47-49fc-b2ad-30a7dd89e77c.rna_seq.genomic.gdc_realn.bam 6915711491 BAM genomic harmonized CPTAC3 5c106a7d-56c6-4fc1-89e4-0eef8a66dc16 acd9f746ff467196f70b6759d725f677 { 'aliquot_tag': 'ALQ_23b7772b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01003.RNA-Seq.R1_L004.A C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTTGA_S13_L004_R1_001.fastq.gz 3602842705 FASTQ R1_L004 unaligned CPTAC3 ca8d953d-a91b-4337-a7d3-29a4413e9e52 1416d451b065c70d112ace29633aebc9 { 'aliquot_tag': 'ALQ_8a196cd7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01003.RNA-Seq.R1_L006.T C3N-01003 UCEC RNA-Seq tumor CPT0078610006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L006_R1_001.fastq.gz 3467987800 FASTQ R1_L006 unaligned CPTAC3 4313d974-189f-4e5e-93c5-87adb840c560 6202996fb10ffcdea41b7e4bb33e36d1 { 'aliquot_tag': 'ALQ_23b7772b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01003.RNA-Seq.R1_.T C3N-01003 UCEC RNA-Seq tumor CPT0350870001 20210806_P4_5_WB7988-plate4_S30_R1_001.fastq.gz 4418984733 FASTQ R1_ unaligned CPTAC3 27741501-da36-4b81-b561-7fc5b1bbf24e 5023c4e92ed6746f055e6b145710f736 { 'aliquot_tag': 'ALQ_40de0387', 'gdc_sample_type': 'Primary Tumor' } -C3N-01003.RNA-Seq.R2_L004.A C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTTGA_S13_L004_R2_001.fastq.gz 3840913134 FASTQ R2_L004 unaligned CPTAC3 ceb30669-cc87-4cb6-a827-f6416abbe816 33b2779abab41ccd821a91ff89f8dedb { 'aliquot_tag': 'ALQ_8a196cd7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01003.RNA-Seq.R2_L006.T C3N-01003 UCEC RNA-Seq tumor CPT0078610006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L006_R2_001.fastq.gz 3743365626 FASTQ R2_L006 unaligned CPTAC3 a613938d-aa43-4c67-ba0c-78c1c6c69a7b 4eba383edf03b5d51c053b01d48f4e4a { 'aliquot_tag': 'ALQ_23b7772b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01003.RNA-Seq.R2_.T C3N-01003 UCEC RNA-Seq tumor CPT0350870001 20210806_P4_5_WB7988-plate4_S30_R2_001.fastq.gz 4265163977 FASTQ R2_ unaligned CPTAC3 471c0b24-4e9b-4182-9231-364f3b6b7735 3615416939874ae9ac0f979a5df3774b { 'aliquot_tag': 'ALQ_40de0387', 'gdc_sample_type': 'Primary Tumor' } +C3N-01003.RNA-Seq.chimeric.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0350870001 36202eda-c7fb-411b-b1dc-b472ffe6b85c.rna_seq.chimeric.gdc_realn.bam 57491008 BAM chimeric harmonized CPTAC3 54c45ff5-387d-446e-8596-92741cd90f85 57217ce373ab7f10b394529f70e36c1d { 'aliquot_tag': 'ALQ_40de0387', 'gdc_sample_type': 'Primary Tumor' } +C3N-01003.RNA-Seq.genomic.A.hg38 C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 1a04cf49-313e-4bbf-9038-dbff2ed48946.rna_seq.genomic.gdc_realn.bam 7381551183 BAM genomic harmonized CPTAC3 63a75053-034c-4a79-9865-648f89a7ee6a 361103a3d28d2e7e671f324b6ad6250f { 'aliquot_tag': 'ALQ_8a196cd7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01003.RNA-Seq.genomic.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0078610006 f7df03a1-eb47-49fc-b2ad-30a7dd89e77c.rna_seq.genomic.gdc_realn.bam 6915711491 BAM genomic harmonized CPTAC3 cd781f89-87e4-4c00-9138-137423e2730e acd9f746ff467196f70b6759d725f677 { 'aliquot_tag': 'ALQ_23b7772b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01003.RNA-Seq.genomic.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0350870001 36202eda-c7fb-411b-b1dc-b472ffe6b85c.rna_seq.genomic.gdc_realn.bam 12251629381 BAM genomic harmonized CPTAC3 a387b6a1-c4f3-4587-b786-31c738c1af6f c164e11b30dde31223d6ff880d743c9c { 'aliquot_tag': 'ALQ_40de0387', 'gdc_sample_type': 'Primary Tumor' } +C3N-01003.RNA-Seq.R1_L004.A C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTTGA_S13_L004_R1_001.fastq.gz 3602842705 FASTQ R1_L004 unaligned CPTAC3 ca8d953d-a91b-4337-a7d3-29a4413e9e52 1416d451b065c70d112ace29633aebc9 { 'aliquot_tag': 'ALQ_8a196cd7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01003.RNA-Seq.R1_L006.T C3N-01003 UCEC RNA-Seq tumor CPT0078610006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L006_R1_001.fastq.gz 3467987800 FASTQ R1_L006 unaligned CPTAC3 4313d974-189f-4e5e-93c5-87adb840c560 6202996fb10ffcdea41b7e4bb33e36d1 { 'aliquot_tag': 'ALQ_23b7772b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01003.RNA-Seq.R2_L004.A C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTTGA_S13_L004_R2_001.fastq.gz 3840913134 FASTQ R2_L004 unaligned CPTAC3 ceb30669-cc87-4cb6-a827-f6416abbe816 33b2779abab41ccd821a91ff89f8dedb { 'aliquot_tag': 'ALQ_8a196cd7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01003.RNA-Seq.R2_L006.T C3N-01003 UCEC RNA-Seq tumor CPT0078610006 170830_UNC31-K00269_0078_AHLCVMBBXX_ATGTCA_S14_L006_R2_001.fastq.gz 3743365626 FASTQ R2_L006 unaligned CPTAC3 a613938d-aa43-4c67-ba0c-78c1c6c69a7b 4eba383edf03b5d51c053b01d48f4e4a { 'aliquot_tag': 'ALQ_23b7772b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01003.RNA-Seq.T C3N-01003 UCEC RNA-Seq tumor CPT0350870001 20210806_P4_5_WB7988-plate4_S30_R1_001.fastq.gz 4418984733 FASTQ unaligned CPTAC3 27741501-da36-4b81-b561-7fc5b1bbf24e 5023c4e92ed6746f055e6b145710f736 +C3N-01003.RNA-Seq.T C3N-01003 UCEC RNA-Seq tumor CPT0350870001 20210806_P4_5_WB7988-plate4_S30_R2_001.fastq.gz 4265163977 FASTQ unaligned CPTAC3 471c0b24-4e9b-4182-9231-364f3b6b7735 3615416939874ae9ac0f979a5df3774b C3N-01003.RNA-Seq.transcriptome.A.hg38 C3N-01003 UCEC RNA-Seq tissue_normal CPT0078620004 1a04cf49-313e-4bbf-9038-dbff2ed48946.rna_seq.transcriptome.gdc_realn.bam 9527237551 BAM transcriptome harmonized CPTAC3 85c4a0cd-fef5-4584-8324-f2df90652812 43870b5b5953f9e9da934a1b757f7c2a { 'aliquot_tag': 'ALQ_8a196cd7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01003.RNA-Seq.transcriptome.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0078610006 f7df03a1-eb47-49fc-b2ad-30a7dd89e77c.rna_seq.transcriptome.gdc_realn.bam 8998170252 BAM transcriptome harmonized CPTAC3 0129a82b-c1d7-4a97-a03a-044f4a8ddf29 c25d16539ef96991927431794dccb7ab { 'aliquot_tag': 'ALQ_23b7772b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01003.RNA-Seq.transcriptome.T.hg38 C3N-01003 UCEC RNA-Seq tumor CPT0350870001 36202eda-c7fb-411b-b1dc-b472ffe6b85c.rna_seq.transcriptome.gdc_realn.bam 3798284631 BAM transcriptome harmonized CPTAC3 3e70b210-a731-4ade-8e35-e3cb4e20d3fc d9fb1725faefa0abf04367aef20182e4 { 'aliquot_tag': 'ALQ_40de0387', 'gdc_sample_type': 'Primary Tumor' } C3N-01003.WGS.N C3N-01003 UCEC WGS blood_normal CPT0078650002 CPT0078650002.WholeGenome.RP-1303.bam 68636357638 BAM aligned CPTAC3 4444ea52-1e5e-4025-a723-85140f57ef6b 9d680ef777c9133cc77650c01cb1820d { 'aliquot_tag': 'ALQ_d15a15f2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01003.WGS.N.hg38 C3N-01003 UCEC WGS blood_normal CPT0078650002 51eb5a05-ad42-43dc-90a4-3ff7bb659a08_gdc_realn.bam 99991837066 BAM harmonized CPTAC3 f7ee25ab-e8b9-411d-8a85-30a3e162ce4b 9011627c85cb35dce9c861f5c944f40c { 'aliquot_tag': 'ALQ_d15a15f2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01003.WGS.T C3N-01003 UCEC WGS tumor CPT0078610009 CPT0078610009.WholeGenome.RP-1303.bam 73701235841 BAM aligned CPTAC3 b8d5e911-7a70-4e50-8511-70fbcafddcca 23d4a494d5c69be327b80bd46d79e3c3 { 'aliquot_tag': 'ALQ_b3086aba', 'gdc_sample_type': 'Primary Tumor' } @@ -23407,11 +25285,11 @@ C3N-01007.MethArray.Green.T C3N-01007 UCEC Methylation Array tumor CPT0095100009 C3N-01007.MethArray.Red.T C3N-01007 UCEC Methylation Array tumor CPT0095100009 202234370120_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 af7edba4-a313-451e-be26-932fb3d4831b d8b8a04dd14bd33bb944bbdff23a08b4 { 'aliquot_tag': 'ALQ_e7300040', 'gdc_sample_type': 'Primary Tumor' } C3N-01007.miRNA-Seq.T C3N-01007 UCEC miRNA-Seq tumor CPT0095100006 180828_UNC32-K00270_0112_AHWTLNBBXX_CACTCA_S38_L007_R1_001.unaln.bam 179324984 BAM unaligned CPTAC3 f53acacb-2056-4c2a-af6f-3675a2206dea c8644e8e18e3f6ce481aa6771d111263 { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor' } C3N-01007.miRNA-Seq.T.hg38 C3N-01007 UCEC miRNA-Seq tumor CPT0095100006 9619725d-e2d8-45cf-80e7-53d5424c74d6_mirnaseq_gdc_realn.bam 204587615 BAM harmonized CPTAC3 86ff480e-16a1-4759-acd0-48a630dce3ab ad526d82129451faadc6ca01dd208080 { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01007.RNA-Seq.chimeric.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 f88d5efc-45a7-4452-8844-6f2ca6fba629.rna_seq.chimeric.gdc_realn.bam 50518162 BAM chimeric harmonized CPTAC3 dda515bd-25ab-48e3-94d1-7c8a64970c21 3fb868f036d637b1b2abcc85b38f08db { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01007.RNA-Seq.genomic.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 f88d5efc-45a7-4452-8844-6f2ca6fba629.rna_seq.genomic.gdc_realn.bam 8426568215 BAM genomic harmonized CPTAC3 9a415a65-ffff-4c66-b4cf-9673a448b6d2 174bc58d2ba38e88812bf19936670d02 { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01007.RNA-Seq.R1_L003.T C3N-01007 UCEC RNA-Seq tumor CPT0095100006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTTGA_S11_L003_R1_001.fastq.gz 3999784745 FASTQ R1_L003 unaligned CPTAC3 e055453b-7826-4eae-a073-08d8e49220a7 e04a8106a0f914ec9bf4a8ebd7c1cc20 { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01007.RNA-Seq.R2_L003.T C3N-01007 UCEC RNA-Seq tumor CPT0095100006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTTGA_S11_L003_R2_001.fastq.gz 4334268791 FASTQ R2_L003 unaligned CPTAC3 98aa1cc5-591d-43c4-9b91-0d395c802611 cecaf8b722e92d241ab567557244f634 { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01007.RNA-Seq.transcriptome.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 f88d5efc-45a7-4452-8844-6f2ca6fba629.rna_seq.transcriptome.gdc_realn.bam 8402210058 BAM transcriptome harmonized CPTAC3 cd0fea5e-c9e4-411f-a701-2e432922464c 0676a72fd021ceb367901da8ed2cc8cb { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01007.RNA-Seq.chimeric.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 09c2ef25-0496-4574-995b-d493f9ddf724.rna_seq.chimeric.gdc_realn.bam 50499893 BAM chimeric harmonized CPTAC3 3b0c63b1-eb2b-4e46-9524-97b104c0c99f 6264d64c91abc0399c1a7c4e3d841ed2 { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01007.RNA-Seq.genomic.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 09c2ef25-0496-4574-995b-d493f9ddf724.rna_seq.genomic.gdc_realn.bam 8427897247 BAM genomic harmonized CPTAC3 217625ec-949a-43ba-911d-fecd7277bbd3 3de59a37de83abfc2b21aa72f5f232ae { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01007.RNA-Seq.R1_L003.T C3N-01007 UCEC RNA-Seq tumor CPT0095100006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTTGA_S11_L003_R1_001.fastq.gz 3999784745 FASTQ R1_L003 unaligned CPTAC3 e055453b-7826-4eae-a073-08d8e49220a7 e04a8106a0f914ec9bf4a8ebd7c1cc20 { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01007.RNA-Seq.R2_L003.T C3N-01007 UCEC RNA-Seq tumor CPT0095100006 171129_UNC32-K00270_0067_BHN2N5BBXX_ACTTGA_S11_L003_R2_001.fastq.gz 4334268791 FASTQ R2_L003 unaligned CPTAC3 98aa1cc5-591d-43c4-9b91-0d395c802611 cecaf8b722e92d241ab567557244f634 { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01007.RNA-Seq.transcriptome.T.hg38 C3N-01007 UCEC RNA-Seq tumor CPT0095100006 09c2ef25-0496-4574-995b-d493f9ddf724.rna_seq.transcriptome.gdc_realn.bam 9686210202 BAM transcriptome harmonized CPTAC3 b69c8da5-e3e6-4973-a62b-37067501d72d 55c4a33caaeaa73e2740c27b1d40bd51 { 'aliquot_tag': 'ALQ_778f1dd1', 'gdc_sample_type': 'Primary Tumor' } C3N-01007.WGS.N C3N-01007 UCEC WGS blood_normal CPT0095120002 CPT0095120002.WholeGenome.RP-1303.bam 58360735935 BAM aligned CPTAC3 a8964b27-a4cf-455a-b287-4e96863cd247 e24827d9319dffd5da7567646fdc1ff9 { 'aliquot_tag': 'ALQ_a228aa8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01007.WGS.N.hg38 C3N-01007 UCEC WGS blood_normal CPT0095120002 5a790ee0-6b08-46bf-9caa-8e1fffea7565_wgs_gdc_realn.bam 86050153894 BAM harmonized CPTAC3 ec2f5ff4-8c4b-4612-8f8e-6e021b101ac0 7d888490d0863681e9c6e18dadfd9b67 { 'aliquot_tag': 'ALQ_a228aa8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01007.WGS.T C3N-01007 UCEC WGS tumor CPT0095100009 CPT0095100009.WholeGenome.RP-1303.bam 70186602687 BAM aligned CPTAC3 02f55ad4-1d37-4631-97f8-7d96d6d5c53a 6087311ef488a098840a119375c791b2 { 'aliquot_tag': 'ALQ_e7300040', 'gdc_sample_type': 'Primary Tumor' } @@ -23424,11 +25302,11 @@ C3N-01008.MethArray.Green.T C3N-01008 UCEC Methylation Array tumor CPT0095130010 C3N-01008.MethArray.Red.T C3N-01008 UCEC Methylation Array tumor CPT0095130010 202234380062_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 272c31ec-1696-4f97-8528-f2c17abe9454 72f94d91f355a05038849404064ed08f { 'aliquot_tag': 'ALQ_c057f375', 'gdc_sample_type': 'Primary Tumor' } C3N-01008.miRNA-Seq.T C3N-01008 UCEC miRNA-Seq tumor CPT0095130007 180828_UNC32-K00270_0112_AHWTLNBBXX_CAGGCG_S39_L007_R1_001.unaln.bam 220680255 BAM unaligned CPTAC3 aabdf7fe-efa6-4bac-9594-8205797869a6 e0cb76c3b205a89179169c7261052adc { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor' } C3N-01008.miRNA-Seq.T.hg38 C3N-01008 UCEC miRNA-Seq tumor CPT0095130007 cde24901-60f6-4e4b-a836-a118c656926d_mirnaseq_gdc_realn.bam 243500831 BAM harmonized CPTAC3 0a0f5af0-a3d7-4331-b276-c8a58fcd0098 b5ed5a993995dd22bae91d0763ac75eb { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor' } -C3N-01008.RNA-Seq.chimeric.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 d58936de-9583-4125-adb5-51f6cb8438df.rna_seq.chimeric.gdc_realn.bam 35996666 BAM chimeric harmonized CPTAC3 b31b95b5-a69d-4da5-b676-8d5125ae5927 296a3d830d7a70246233b66a65d517af { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor' } -C3N-01008.RNA-Seq.genomic.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 d58936de-9583-4125-adb5-51f6cb8438df.rna_seq.genomic.gdc_realn.bam 8116807272 BAM genomic harmonized CPTAC3 81bbfe4a-f703-4ce3-9afe-9c008dacf1a4 3dc9e6b629fbe9b6db4dd0f998ae5b1e { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor' } -C3N-01008.RNA-Seq.R1_L002.T C3N-01008 UCEC RNA-Seq tumor CPT0095130007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L002_R1_001.fastq.gz 3884231388 FASTQ R1_L002 unaligned CPTAC3 746a2984-4434-48b2-bdcb-302434f58f19 9142b1b9073a76e4709ae13ced14adad { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor' } -C3N-01008.RNA-Seq.R2_L002.T C3N-01008 UCEC RNA-Seq tumor CPT0095130007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L002_R2_001.fastq.gz 4179043586 FASTQ R2_L002 unaligned CPTAC3 bd9117e2-c12d-47ac-a9de-642d5a4a3cee 33166e1db3b09ef1e6b693f5f2b312ca { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor' } -C3N-01008.RNA-Seq.transcriptome.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 d58936de-9583-4125-adb5-51f6cb8438df.rna_seq.transcriptome.gdc_realn.bam 8509447859 BAM transcriptome harmonized CPTAC3 7a383a16-c469-4053-8f3e-5f56e2db68fd 2a1729303e9db34ffb4d7d679abb4446 { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor' } +C3N-01008.RNA-Seq.chimeric.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 3c529b34-7fce-4f11-8c13-c75af5603559.rna_seq.chimeric.gdc_realn.bam 35989663 BAM chimeric harmonized CPTAC3 7ad3a2bc-d81a-4cec-a3b2-e1fa04437773 8c4582b1807e95aa188e1695d09f32f1 { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor' } +C3N-01008.RNA-Seq.genomic.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 3c529b34-7fce-4f11-8c13-c75af5603559.rna_seq.genomic.gdc_realn.bam 8117689364 BAM genomic harmonized CPTAC3 e1c4c621-897e-4038-b667-3b2779e722db 180e776702389f37f4c33cdf828eaaa3 { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor' } +C3N-01008.RNA-Seq.R1_L002.T C3N-01008 UCEC RNA-Seq tumor CPT0095130007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L002_R1_001.fastq.gz 3884231388 FASTQ R1_L002 unaligned CPTAC3 746a2984-4434-48b2-bdcb-302434f58f19 9142b1b9073a76e4709ae13ced14adad { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01008.RNA-Seq.R2_L002.T C3N-01008 UCEC RNA-Seq tumor CPT0095130007 171129_UNC32-K00270_0067_BHN2N5BBXX_ACAGTG_S5_L002_R2_001.fastq.gz 4179043586 FASTQ R2_L002 unaligned CPTAC3 bd9117e2-c12d-47ac-a9de-642d5a4a3cee 33166e1db3b09ef1e6b693f5f2b312ca { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01008.RNA-Seq.transcriptome.T.hg38 C3N-01008 UCEC RNA-Seq tumor CPT0095130007 3c529b34-7fce-4f11-8c13-c75af5603559.rna_seq.transcriptome.gdc_realn.bam 9772276931 BAM transcriptome harmonized CPTAC3 4397e6e2-a8b5-43b2-87bf-7ac00a29ba60 416d6575d02fa71815bad5a09d726574 { 'aliquot_tag': 'ALQ_47285797', 'gdc_sample_type': 'Primary Tumor' } C3N-01008.WGS.N C3N-01008 UCEC WGS blood_normal CPT0095170002 CPT0095170002.WholeGenome.RP-1303.bam 61040399034 BAM aligned CPTAC3 40efee03-fadb-4297-8252-822cc28097f1 46b88c645176dc5763837eb458235ae3 { 'aliquot_tag': 'ALQ_c2c205d8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01008.WGS.N.hg38 C3N-01008 UCEC WGS blood_normal CPT0095170002 1d7d2cc5-25d7-46c6-b6e4-ca8ed3295ff7_wgs_gdc_realn.bam 89163757990 BAM harmonized CPTAC3 3ca33205-c8b6-4ca4-9b6c-a98e1457d478 8326e41164b81bb51a9c9bac03078af9 { 'aliquot_tag': 'ALQ_c2c205d8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01008.WGS.T C3N-01008 UCEC WGS tumor CPT0095130010 CPT0095130010.WholeGenome.RP-1303.bam 70514562709 BAM aligned CPTAC3 a847efed-3716-45af-b52e-262fd4287b34 ee35982a69d18ae61d3e03242e0f429e { 'aliquot_tag': 'ALQ_c057f375', 'gdc_sample_type': 'Primary Tumor' } @@ -23448,11 +25326,11 @@ C3N-01011.miRNA-Seq.T.hg38 C3N-01011 PDA miRNA-Seq tumor CPT0065640006 bedc811b- C3N-01011.RNA-Seq.chimeric.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 100ce9dd-2a28-4632-a88e-152fc2c76692.rna_seq.chimeric.gdc_realn.bam 35711589 BAM chimeric harmonized CPTAC3 40694274-6a7f-4c1f-ad23-32a66c3595f7 4739b6dc060923a8b0696db657ba202f { 'aliquot_tag': 'ALQ_be6488b4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01011.RNA-Seq.chimeric.T.hg38 C3N-01011 PDA RNA-Seq tumor CPT0065640006 a00aac13-4761-4463-8c6e-99ee8db36f1a.rna_seq.chimeric.gdc_realn.bam 27652274 BAM chimeric harmonized CPTAC3 0e450fc3-00db-4f50-9485-9767deab4c0c 9ba6060b479ea76272c4f99b00310067 { 'aliquot_tag': 'ALQ_462a9905', 'gdc_sample_type': 'Primary Tumor' } C3N-01011.RNA-Seq.genomic.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 100ce9dd-2a28-4632-a88e-152fc2c76692.rna_seq.genomic.gdc_realn.bam 9594141525 BAM genomic harmonized CPTAC3 cb97183f-987e-4285-9917-f7a27b3242a4 d66ff41b68e6075614a91c3c0a686b81 { 'aliquot_tag': 'ALQ_be6488b4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01011.RNA-Seq.genomic.T.hg38 C3N-01011 PDA RNA-Seq tumor CPT0065640006 a00aac13-4761-4463-8c6e-99ee8db36f1a.rna_seq.genomic.gdc_realn.bam 9306443487 BAM genomic harmonized CPTAC3 46977caa-676a-4ba8-aad2-81a0c318945c e4541f92ac41dbb6d73a0226a9756210 { 'aliquot_tag': 'ALQ_462a9905', 'gdc_sample_type': 'Primary Tumor' } -C3N-01011.RNA-Seq.R1_L003.A C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATCACG_S9_L003_R1_001.fastq.gz 3961400843 FASTQ R1_L003 unaligned CPTAC3 14df59ba-a33c-4c06-a797-f354f8f5a49d 52e7d3db167fac9507eb13691e975bde { 'aliquot_tag': 'ALQ_be6488b4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01011.RNA-Seq.R1_L004.T C3N-01011 PDA RNA-Seq tumor CPT0065640006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L004_R1_001.fastq.gz 4357361033 FASTQ R1_L004 unaligned CPTAC3 f647f91a-14f2-4b99-b4d7-13a9ec2c2b77 22825c1f1da5265ece7b5ea992565394 { 'aliquot_tag': 'ALQ_462a9905', 'gdc_sample_type': 'Primary Tumor' } -C3N-01011.RNA-Seq.R2_L003.A C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATCACG_S9_L003_R2_001.fastq.gz 4042640158 FASTQ R2_L003 unaligned CPTAC3 a55dd87b-078c-4637-8554-87d1fe3d3b0c 17ed2864dcfbc27cf04990d00954ded2 { 'aliquot_tag': 'ALQ_be6488b4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01011.RNA-Seq.R2_L004.T C3N-01011 PDA RNA-Seq tumor CPT0065640006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L004_R2_001.fastq.gz 4713123370 FASTQ R2_L004 unaligned CPTAC3 21e97bfd-6735-4b9e-8a15-5012a3699da4 551a61e9ca9f415192006629833fdd0b { 'aliquot_tag': 'ALQ_462a9905', 'gdc_sample_type': 'Primary Tumor' } +C3N-01011.RNA-Seq.genomic.T.hg38 C3N-01011 PDA RNA-Seq tumor CPT0065640006 a00aac13-4761-4463-8c6e-99ee8db36f1a.rna_seq.genomic.gdc_realn.bam 9306443487 BAM genomic harmonized CPTAC3 9b32e657-29df-4b8b-b7a6-fd86087522c2 e4541f92ac41dbb6d73a0226a9756210 { 'aliquot_tag': 'ALQ_462a9905', 'gdc_sample_type': 'Primary Tumor' } +C3N-01011.RNA-Seq.R1_L003.A C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATCACG_S9_L003_R1_001.fastq.gz 3961400843 FASTQ R1_L003 unaligned CPTAC3 14df59ba-a33c-4c06-a797-f354f8f5a49d 52e7d3db167fac9507eb13691e975bde { 'aliquot_tag': 'ALQ_be6488b4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01011.RNA-Seq.R1_L004.T C3N-01011 PDA RNA-Seq tumor CPT0065640006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L004_R1_001.fastq.gz 4357361033 FASTQ R1_L004 unaligned CPTAC3 f647f91a-14f2-4b99-b4d7-13a9ec2c2b77 22825c1f1da5265ece7b5ea992565394 { 'aliquot_tag': 'ALQ_462a9905', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01011.RNA-Seq.R2_L003.A C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 180516_UNC31-K00269_0129_AHTWLFBBXX_ATCACG_S9_L003_R2_001.fastq.gz 4042640158 FASTQ R2_L003 unaligned CPTAC3 a55dd87b-078c-4637-8554-87d1fe3d3b0c 17ed2864dcfbc27cf04990d00954ded2 { 'aliquot_tag': 'ALQ_be6488b4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-01011.RNA-Seq.R2_L004.T C3N-01011 PDA RNA-Seq tumor CPT0065640006 170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L004_R2_001.fastq.gz 4713123370 FASTQ R2_L004 unaligned CPTAC3 21e97bfd-6735-4b9e-8a15-5012a3699da4 551a61e9ca9f415192006629833fdd0b { 'aliquot_tag': 'ALQ_462a9905', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-01011.RNA-Seq.transcriptome.A.hg38 C3N-01011 PDA RNA-Seq tissue_normal CPT0066020009 100ce9dd-2a28-4632-a88e-152fc2c76692.rna_seq.transcriptome.gdc_realn.bam 10740772385 BAM transcriptome harmonized CPTAC3 4bf8958c-0c10-4cb0-955f-29c5dd5eaff9 7a79ce3a974f3b2a8d4fe51ddc93029e { 'aliquot_tag': 'ALQ_be6488b4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01011.RNA-Seq.transcriptome.T.hg38 C3N-01011 PDA RNA-Seq tumor CPT0065640006 a00aac13-4761-4463-8c6e-99ee8db36f1a.rna_seq.transcriptome.gdc_realn.bam 11754964739 BAM transcriptome harmonized CPTAC3 2dfcfe24-81d4-4866-8cb5-659282958319 61f2adb6778c898ceb69101ecafa90fd { 'aliquot_tag': 'ALQ_462a9905', 'gdc_sample_type': 'Primary Tumor' } C3N-01011.WGS.A C3N-01011 PDA WGS tissue_normal CPT0066020006 CPT0066020006.WholeGenome.RP-1303.bam 70576796472 BAM aligned CPTAC3 f8a7ec51-c9b3-415d-a3e7-5390d373ae21 bce33782a6d87f5607f547dec89a1a18 { 'aliquot_tag': 'ALQ_2edb9525', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23476,9 +25354,9 @@ C3N-01012.MethArray.Red.T C3N-01012 PDA Methylation Array tumor CPT0241320008 20 C3N-01012.miRNA-Seq.T C3N-01012 PDA miRNA-Seq tumor CPT0241320011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTTGA_S31_L005_R1_001.unaln.bam 258753704 BAM unaligned CPTAC3 a3afdd3f-66fd-4520-9cb2-e6778037e6ed df7267ddde86c286034b374088f3841e { 'aliquot_tag': 'ALQ_8644521c', 'gdc_sample_type': 'Primary Tumor' } C3N-01012.miRNA-Seq.T.hg38 C3N-01012 PDA miRNA-Seq tumor CPT0241320011 e14fe70b-915e-44c0-9868-58a2e5e8e3ae_mirnaseq_gdc_realn.bam 290357937 BAM harmonized CPTAC3 ba62fa7d-d00b-446b-b9c4-ab3effd37e53 a68072e0a2684e5943df1981cea2b41d { 'aliquot_tag': 'ALQ_8644521c', 'gdc_sample_type': 'Primary Tumor' } C3N-01012.RNA-Seq.chimeric.T.hg38 C3N-01012 PDA RNA-Seq tumor CPT0241320011 16142f13-a6b0-4d70-8475-c2f785b05c75.rna_seq.chimeric.gdc_realn.bam 51171831 BAM chimeric harmonized CPTAC3 7f2f633c-9d55-4b86-ba95-1f495e5a43a2 6f9eb6bc2f9f1c39332c39c8a7dc3ff7 { 'aliquot_tag': 'ALQ_8644521c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01012.RNA-Seq.genomic.T.hg38 C3N-01012 PDA RNA-Seq tumor CPT0241320011 16142f13-a6b0-4d70-8475-c2f785b05c75.rna_seq.genomic.gdc_realn.bam 11980051529 BAM genomic harmonized CPTAC3 8c122f86-0054-4520-a8b1-420374af0d98 68c64beea3768dfd5c19ac1faaa5be5f { 'aliquot_tag': 'ALQ_8644521c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01012.RNA-Seq.R1_L008.T C3N-01012 PDA RNA-Seq tumor CPT0241320011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAATGAGA-GAGGCATT_S29_L008_R1_001.fastq.gz 5425874563 FASTQ R1_L008 unaligned CPTAC3 8377ab7e-9378-426f-b897-316df8584239 896247f9bd11f052471c4ceb7d9ff077 { 'aliquot_tag': 'ALQ_8644521c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01012.RNA-Seq.R2_L008.T C3N-01012 PDA RNA-Seq tumor CPT0241320011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAATGAGA-GAGGCATT_S29_L008_R2_001.fastq.gz 6204358818 FASTQ R2_L008 unaligned CPTAC3 d33aabf6-72e4-4c00-ad25-3d3cfd351f5a becf39f19ea61276b70743e47c80b855 { 'aliquot_tag': 'ALQ_8644521c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01012.RNA-Seq.genomic.T.hg38 C3N-01012 PDA RNA-Seq tumor CPT0241320011 16142f13-a6b0-4d70-8475-c2f785b05c75.rna_seq.genomic.gdc_realn.bam 11980051529 BAM genomic harmonized CPTAC3 5c0f9ae8-2c35-41b3-a471-98b90bdeab91 68c64beea3768dfd5c19ac1faaa5be5f { 'aliquot_tag': 'ALQ_8644521c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01012.RNA-Seq.R1_L008.T C3N-01012 PDA RNA-Seq tumor CPT0241320011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAATGAGA-GAGGCATT_S29_L008_R1_001.fastq.gz 5425874563 FASTQ R1_L008 unaligned CPTAC3 8377ab7e-9378-426f-b897-316df8584239 896247f9bd11f052471c4ceb7d9ff077 { 'aliquot_tag': 'ALQ_8644521c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01012.RNA-Seq.R2_L008.T C3N-01012 PDA RNA-Seq tumor CPT0241320011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAATGAGA-GAGGCATT_S29_L008_R2_001.fastq.gz 6204358818 FASTQ R2_L008 unaligned CPTAC3 d33aabf6-72e4-4c00-ad25-3d3cfd351f5a becf39f19ea61276b70743e47c80b855 { 'aliquot_tag': 'ALQ_8644521c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01012.RNA-Seq.transcriptome.T.hg38 C3N-01012 PDA RNA-Seq tumor CPT0241320011 16142f13-a6b0-4d70-8475-c2f785b05c75.rna_seq.transcriptome.gdc_realn.bam 16933378838 BAM transcriptome harmonized CPTAC3 4fce4632-2117-45da-99c9-38f6143e4a82 1948f5110cc28c29b22069167ee286a1 { 'aliquot_tag': 'ALQ_8644521c', 'gdc_sample_type': 'Primary Tumor' } C3N-01012.WGS.N C3N-01012 PDA WGS blood_normal CPT0241740002 CPT0241740002.WholeGenome.RP-1303.bam 65390125292 BAM aligned CPTAC3 cf18d82a-e47e-4640-b3f0-dd1dd018aa2c 13a450e63cd8598bd73d67139c60d5a7 { 'aliquot_tag': 'ALQ_12878551', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01012.WGS.N.hg38 C3N-01012 PDA WGS blood_normal CPT0241740002 999b4985-3f54-41a7-bdd3-8ecf55ba1669_wgs_gdc_realn.bam 95659226700 BAM harmonized CPTAC3 d9f91e6e-0290-4048-8901-a7d91e4ef3ff 6d4dc79ee40ab9468ae491fb751b72a3 { 'aliquot_tag': 'ALQ_12878551', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23500,10 +25378,10 @@ C3N-01016.RNA-Seq.chimeric.A.hg38 C3N-01016 LUAD RNA-Seq tissue_normal CPT008381 C3N-01016.RNA-Seq.chimeric.T.hg38 C3N-01016 LUAD RNA-Seq tumor CPT0083780009 5a644b36-d24e-4ae8-9c83-d5e21c6cb2f5.rna_seq.chimeric.gdc_realn.bam 22433354 BAM chimeric harmonized CPTAC3 85f6ed6e-c706-41aa-a8e0-5f304f690b46 0ee9b444f410be6fd03ed9f688786c9f { 'aliquot_tag': 'ALQ_ae639d38', 'gdc_sample_type': 'Primary Tumor' } C3N-01016.RNA-Seq.genomic.A.hg38 C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 a131537b-4c39-46d4-9bfe-e1fc650eab4d.rna_seq.genomic.gdc_realn.bam 8607414589 BAM genomic harmonized CPTAC3 5d0a8d22-e7cc-48cc-9e0b-4744b1e7f17d e91fd275020659921d37e186db62921f { 'aliquot_tag': 'ALQ_c29a500d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01016.RNA-Seq.genomic.T.hg38 C3N-01016 LUAD RNA-Seq tumor CPT0083780009 5a644b36-d24e-4ae8-9c83-d5e21c6cb2f5.rna_seq.genomic.gdc_realn.bam 6282101016 BAM genomic harmonized CPTAC3 b7718bc1-975f-4b27-9ac3-636ddc269956 962628b33beec7947d1cd4d9857ca098 { 'aliquot_tag': 'ALQ_ae639d38', 'gdc_sample_type': 'Primary Tumor' } -C3N-01016.RNA-Seq.R1_L004.A C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTTGA_S15_L004_R1_001.fastq.gz 3939725902 FASTQ R1_L004 unaligned CPTAC3 9fe2189b-e03b-42d3-bc1f-19f3829bf551 8057975f528fba65d2313038391f618f { 'aliquot_tag': 'ALQ_c29a500d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01016.RNA-Seq.R1_L007.T C3N-01016 LUAD RNA-Seq tumor CPT0083780009 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L007_R1_001.fastq.gz 2805732760 FASTQ R1_L007 unaligned CPTAC3 03ec3625-746d-4c60-ad33-cc0e6520e289 0d84bc4017aa50cea3715942543c0660 { 'aliquot_tag': 'ALQ_ae639d38', 'gdc_sample_type': 'Primary Tumor' } -C3N-01016.RNA-Seq.R2_L004.A C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTTGA_S15_L004_R2_001.fastq.gz 4361112402 FASTQ R2_L004 unaligned CPTAC3 f95401df-78c3-46a4-a075-cdd8bb3856b1 740ef893cbd8c5abc51b12c124f1597a { 'aliquot_tag': 'ALQ_c29a500d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01016.RNA-Seq.R2_L007.T C3N-01016 LUAD RNA-Seq tumor CPT0083780009 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L007_R2_001.fastq.gz 3083737852 FASTQ R2_L007 unaligned CPTAC3 1d4cfed2-ff66-4d0e-8835-596d493dfdf9 16a4dd426301e436038820a9db0e7273 { 'aliquot_tag': 'ALQ_ae639d38', 'gdc_sample_type': 'Primary Tumor' } +C3N-01016.RNA-Seq.R1_L004.A C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTTGA_S15_L004_R1_001.fastq.gz 3939725902 FASTQ R1_L004 unaligned CPTAC3 9fe2189b-e03b-42d3-bc1f-19f3829bf551 8057975f528fba65d2313038391f618f { 'aliquot_tag': 'ALQ_c29a500d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01016.RNA-Seq.R1_L007.T C3N-01016 LUAD RNA-Seq tumor CPT0083780009 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L007_R1_001.fastq.gz 2805732760 FASTQ R1_L007 unaligned CPTAC3 03ec3625-746d-4c60-ad33-cc0e6520e289 0d84bc4017aa50cea3715942543c0660 { 'aliquot_tag': 'ALQ_ae639d38', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01016.RNA-Seq.R2_L004.A C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTTGA_S15_L004_R2_001.fastq.gz 4361112402 FASTQ R2_L004 unaligned CPTAC3 f95401df-78c3-46a4-a075-cdd8bb3856b1 740ef893cbd8c5abc51b12c124f1597a { 'aliquot_tag': 'ALQ_c29a500d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01016.RNA-Seq.R2_L007.T C3N-01016 LUAD RNA-Seq tumor CPT0083780009 170908_UNC31-K00269_0080_BHLJ52BBXX_GATCAG_S3_L007_R2_001.fastq.gz 3083737852 FASTQ R2_L007 unaligned CPTAC3 1d4cfed2-ff66-4d0e-8835-596d493dfdf9 16a4dd426301e436038820a9db0e7273 { 'aliquot_tag': 'ALQ_ae639d38', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01016.RNA-Seq.transcriptome.A.hg38 C3N-01016 LUAD RNA-Seq tissue_normal CPT0083810006 a131537b-4c39-46d4-9bfe-e1fc650eab4d.rna_seq.transcriptome.gdc_realn.bam 9923232781 BAM transcriptome harmonized CPTAC3 15b692be-cfce-437c-bc13-5063cde2f620 e83f86a1bbdbb1edde113306b423dd54 { 'aliquot_tag': 'ALQ_c29a500d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01016.RNA-Seq.transcriptome.T.hg38 C3N-01016 LUAD RNA-Seq tumor CPT0083780009 5a644b36-d24e-4ae8-9c83-d5e21c6cb2f5.rna_seq.transcriptome.gdc_realn.bam 6173625416 BAM transcriptome harmonized CPTAC3 c50393fd-e6c1-42b0-af8a-6c43682c92b9 ec95a84c566386c6f462d137101c00a1 { 'aliquot_tag': 'ALQ_ae639d38', 'gdc_sample_type': 'Primary Tumor' } C3N-01016.WGS.A C3N-01016 LUAD WGS tissue_normal CPT0083810009 CPT0083810009.WholeGenome.RP-1303.bam 61749987217 BAM aligned CPTAC3 3bf3855f-c4a6-4a68-99b0-6ad707795183 17b4179dc8fa2a694d1cb8118d116c08 { 'aliquot_tag': 'ALQ_52254d9c', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23528,12 +25406,12 @@ C3N-01017.miRNA-Seq.T C3N-01017 LSCC miRNA-Seq tumor CPT0069890009 181012_UNC32- C3N-01017.miRNA-Seq.T.hg38 C3N-01017 LSCC miRNA-Seq tumor CPT0069890009 db52a607-33e0-46e3-843b-70e950d7d4bb_mirnaseq_gdc_realn.bam 240595029 BAM harmonized CPTAC3 820de256-7bd6-41b7-bf7a-055315802484 a1bda4060f740099ef007d73d4d12d61 { 'aliquot_tag': 'ALQ_d3af4b21', 'gdc_sample_type': 'Primary Tumor' } C3N-01017.RNA-Seq.chimeric.A.hg38 C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 3bd0dffc-5a25-4ff8-8dbb-aa96e6070291.rna_seq.chimeric.gdc_realn.bam 35077180 BAM chimeric harmonized CPTAC3 6bce2f71-0b72-4198-85bd-42329ed0114a 66a85aa77bbbf37a7ed85b7c503dbef7 { 'aliquot_tag': 'ALQ_855ce764', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01017.RNA-Seq.chimeric.T.hg38 C3N-01017 LSCC RNA-Seq tumor CPT0069890009 c24f0802-9386-44d1-9501-49684e45ebdd.rna_seq.chimeric.gdc_realn.bam 26705329 BAM chimeric harmonized CPTAC3 242c7845-a44c-4aad-ace6-7b6bc010d73a 8bc29e04a3f7d44c0f2d35eb9918c10f { 'aliquot_tag': 'ALQ_d3af4b21', 'gdc_sample_type': 'Primary Tumor' } -C3N-01017.RNA-Seq.genomic.A.hg38 C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 3bd0dffc-5a25-4ff8-8dbb-aa96e6070291.rna_seq.genomic.gdc_realn.bam 7716273478 BAM genomic harmonized CPTAC3 14d02931-f39f-4300-99f2-5b64116489b7 4d4e675454a51ec3d9a954ac1ac48ee8 { 'aliquot_tag': 'ALQ_855ce764', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01017.RNA-Seq.genomic.T.hg38 C3N-01017 LSCC RNA-Seq tumor CPT0069890009 c24f0802-9386-44d1-9501-49684e45ebdd.rna_seq.genomic.gdc_realn.bam 7778510990 BAM genomic harmonized CPTAC3 f5dd4531-fb69-4a73-9e42-2cadf2ad08cf 03f7653c41460abd0e60563e0eb15507 { 'aliquot_tag': 'ALQ_d3af4b21', 'gdc_sample_type': 'Primary Tumor' } -C3N-01017.RNA-Seq.R1_L002.T C3N-01017 LSCC RNA-Seq tumor CPT0069890009 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L002_R1_001.fastq.gz 3567465031 FASTQ R1_L002 unaligned CPTAC3 5f1df8b3-0f2f-4951-9960-ffe5648f405a daad6fa5cbf936e2272b19e5275363a6 { 'aliquot_tag': 'ALQ_d3af4b21', 'gdc_sample_type': 'Primary Tumor' } -C3N-01017.RNA-Seq.R1_L005.A C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 180516_UNC32-K00270_0095_AHTY5LBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3504193022 FASTQ R1_L005 unaligned CPTAC3 3f3023db-1b21-4122-8036-28c6d2ad20bb faa290801786133a38ba675a1390d748 { 'aliquot_tag': 'ALQ_855ce764', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01017.RNA-Seq.R2_L002.T C3N-01017 LSCC RNA-Seq tumor CPT0069890009 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L002_R2_001.fastq.gz 3828443095 FASTQ R2_L002 unaligned CPTAC3 20e79feb-035d-42ea-9583-e9aa9da6f1d5 934c9511279d389d401da4218e0141e6 { 'aliquot_tag': 'ALQ_d3af4b21', 'gdc_sample_type': 'Primary Tumor' } -C3N-01017.RNA-Seq.R2_L005.A C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 180516_UNC32-K00270_0095_AHTY5LBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3844337829 FASTQ R2_L005 unaligned CPTAC3 a3928924-74dd-47f0-a936-4b789a057b5a e2e7d52643cced7d447f5189618bb7a4 { 'aliquot_tag': 'ALQ_855ce764', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01017.RNA-Seq.genomic.A.hg38 C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 3bd0dffc-5a25-4ff8-8dbb-aa96e6070291.rna_seq.genomic.gdc_realn.bam 7716273478 BAM genomic harmonized CPTAC3 dc7e1293-67ff-461c-aea8-42ea83c93346 4d4e675454a51ec3d9a954ac1ac48ee8 { 'aliquot_tag': 'ALQ_855ce764', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01017.RNA-Seq.genomic.T.hg38 C3N-01017 LSCC RNA-Seq tumor CPT0069890009 c24f0802-9386-44d1-9501-49684e45ebdd.rna_seq.genomic.gdc_realn.bam 7778510990 BAM genomic harmonized CPTAC3 ca269427-e989-433b-9c8e-d571725d0341 03f7653c41460abd0e60563e0eb15507 { 'aliquot_tag': 'ALQ_d3af4b21', 'gdc_sample_type': 'Primary Tumor' } +C3N-01017.RNA-Seq.R1_L002.T C3N-01017 LSCC RNA-Seq tumor CPT0069890009 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L002_R1_001.fastq.gz 3567465031 FASTQ R1_L002 unaligned CPTAC3 5f1df8b3-0f2f-4951-9960-ffe5648f405a daad6fa5cbf936e2272b19e5275363a6 { 'aliquot_tag': 'ALQ_d3af4b21', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01017.RNA-Seq.R1_L005.A C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 180516_UNC32-K00270_0095_AHTY5LBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3504193022 FASTQ R1_L005 unaligned CPTAC3 3f3023db-1b21-4122-8036-28c6d2ad20bb faa290801786133a38ba675a1390d748 { 'aliquot_tag': 'ALQ_855ce764', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01017.RNA-Seq.R2_L002.T C3N-01017 LSCC RNA-Seq tumor CPT0069890009 170828_UNC31-K00269_0077_AHLF33BBXX_GATCAG_S5_L002_R2_001.fastq.gz 3828443095 FASTQ R2_L002 unaligned CPTAC3 20e79feb-035d-42ea-9583-e9aa9da6f1d5 934c9511279d389d401da4218e0141e6 { 'aliquot_tag': 'ALQ_d3af4b21', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01017.RNA-Seq.R2_L005.A C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 180516_UNC32-K00270_0095_AHTY5LBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3844337829 FASTQ R2_L005 unaligned CPTAC3 a3928924-74dd-47f0-a936-4b789a057b5a e2e7d52643cced7d447f5189618bb7a4 { 'aliquot_tag': 'ALQ_855ce764', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-01017.RNA-Seq.transcriptome.A.hg38 C3N-01017 LSCC RNA-Seq tissue_normal CPT0069900006 3bd0dffc-5a25-4ff8-8dbb-aa96e6070291.rna_seq.transcriptome.gdc_realn.bam 9778903530 BAM transcriptome harmonized CPTAC3 39049207-ca50-4498-9191-6c66863f9a09 4d038e5bb065dcf7474f30eed0c9ffa7 { 'aliquot_tag': 'ALQ_855ce764', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01017.RNA-Seq.transcriptome.T.hg38 C3N-01017 LSCC RNA-Seq tumor CPT0069890009 c24f0802-9386-44d1-9501-49684e45ebdd.rna_seq.transcriptome.gdc_realn.bam 8728528374 BAM transcriptome harmonized CPTAC3 c9e0ce8e-fdee-419d-860f-5dff620c28fd 7cce4990ea24e166ab50cc7d22029e16 { 'aliquot_tag': 'ALQ_d3af4b21', 'gdc_sample_type': 'Primary Tumor' } C3N-01017.WGS.A C3N-01017 LSCC WGS tissue_normal CPT0069900009 CPT0069900009.WholeGenome.RP-1303.bam 65404963360 BAM aligned CPTAC3 cc742217-0711-43d0-a2fd-341b70595ad0 84eb0f7956f54a7776e71ed26e47a4c8 { 'aliquot_tag': 'ALQ_15e3faf5', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23556,16 +25434,16 @@ C3N-01018.miRNA-Seq.A C3N-01018 LSCC miRNA-Seq tissue_normal CPT0104950006 18110 C3N-01018.miRNA-Seq.A.hg38 C3N-01018 LSCC miRNA-Seq tissue_normal CPT0104950006 d1d7efb0-e63d-4dd4-a044-b875c419a2f3_mirnaseq_gdc_realn.bam 273726361 BAM harmonized CPTAC3 f3d7c67a-679d-43c7-b055-7b5f0d894c67 178fda44a347ee1d477ec9efc591eafd { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01018.miRNA-Seq.T C3N-01018 LSCC miRNA-Seq tumor CPT0104930006 181108_UNC31-K00269_0163_BH23TVBBXY_TCATTC_S45_L007_R1_001.unaln.bam 181235668 BAM unaligned CPTAC3 bc2c7ec3-30e5-4426-b2a7-3b6223f2085f 266f97f1f80b4dd705185191f8020a69 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor' } C3N-01018.miRNA-Seq.T.hg38 C3N-01018 LSCC miRNA-Seq tumor CPT0104930006 c822dd30-9e9b-4573-9455-3c40ed138f78_mirnaseq_gdc_realn.bam 198530314 BAM harmonized CPTAC3 5c4797b0-3447-4af1-9380-388fa37dde41 961e00b72459fbddfdce8b41c8133e16 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01018.RNA-Seq.chimeric.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 1f78bacb-7af2-4b94-820f-e2d6c585cc36.rna_seq.chimeric.gdc_realn.bam 72307664 BAM chimeric harmonized CPTAC3 0d78cba8-7114-40b6-a61d-337eb0b9f8a0 ec522ae2d0896c2447e43791680d07c4 { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01018.RNA-Seq.chimeric.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 6aa0e700-ffb1-4e31-97c7-4ca6c1d12eb5.rna_seq.chimeric.gdc_realn.bam 37774041 BAM chimeric harmonized CPTAC3 af9a22f7-e323-4319-bb0e-49b64f0e940a 31f679269ae9fd6fb802a04696a12949 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01018.RNA-Seq.genomic.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 1f78bacb-7af2-4b94-820f-e2d6c585cc36.rna_seq.genomic.gdc_realn.bam 9687306363 BAM genomic harmonized CPTAC3 c7e40661-7c71-4e8a-9bed-a5354ca93fd1 29df82071f47ceef0d969eb53861e6eb { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01018.RNA-Seq.genomic.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 6aa0e700-ffb1-4e31-97c7-4ca6c1d12eb5.rna_seq.genomic.gdc_realn.bam 9432961587 BAM genomic harmonized CPTAC3 a5e111b1-f8e0-4437-a090-23e8f3bf7ea9 4eb4c482669a902b02b52c97ba6664f8 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01018.RNA-Seq.R1_L005.T C3N-01018 LSCC RNA-Seq tumor CPT0104930006 171109_UNC31-K00269_0090_AHLHNWBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4226217192 FASTQ R1_L005 unaligned CPTAC3 a4de5c30-791c-4edc-930a-d47ecf694598 5fdf17bfe701e3067d3f46bd84e94e82 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01018.RNA-Seq.R1_L007.A C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L007_R1_001.fastq.gz 4416913150 FASTQ R1_L007 unaligned CPTAC3 30102117-9e4f-4b22-9bd1-b129c1ff2d1a e6c93562ebeeaa5e29dbd90c92c1d34a { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01018.RNA-Seq.R2_L005.T C3N-01018 LSCC RNA-Seq tumor CPT0104930006 171109_UNC31-K00269_0090_AHLHNWBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4836971452 FASTQ R2_L005 unaligned CPTAC3 c3d91e6a-042c-459f-ba03-cdaf097640e3 69b85c4a6c19f44c8c040d13bfa7d0c1 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01018.RNA-Seq.R2_L007.A C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L007_R2_001.fastq.gz 4874949133 FASTQ R2_L007 unaligned CPTAC3 29a968a9-6cfc-4815-ae9c-06423a57d425 b0fd4b2f5863ccbf1a928bee368ffb43 { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01018.RNA-Seq.transcriptome.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 1f78bacb-7af2-4b94-820f-e2d6c585cc36.rna_seq.transcriptome.gdc_realn.bam 10219359119 BAM transcriptome harmonized CPTAC3 fab59bc7-a163-4362-a069-6b66b4c516a9 1f47a8d509d827b3787ff0f51a4bd397 { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01018.RNA-Seq.transcriptome.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 6aa0e700-ffb1-4e31-97c7-4ca6c1d12eb5.rna_seq.transcriptome.gdc_realn.bam 10870368991 BAM transcriptome harmonized CPTAC3 95575a57-7168-4821-b38d-e148d2c77a47 6b8858d0381edc977cb0a2559e3790bb { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01018.RNA-Seq.chimeric.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 51c8a5bb-8397-4da1-86f6-db0c81efeb4a.rna_seq.chimeric.gdc_realn.bam 72282370 BAM chimeric harmonized CPTAC3 e3881fa3-1e6b-40a4-bf6f-8174b4b51141 538f9ba4ceacebb334ee683b7b6ff8c0 { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01018.RNA-Seq.chimeric.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 e1293d7f-5681-4210-bd00-4b2d578356f1.rna_seq.chimeric.gdc_realn.bam 37766587 BAM chimeric harmonized CPTAC3 b76490dd-5f82-4e52-80b2-439e4de1fbd6 bdf06ec70f1aeb47f7778cde84c00dd2 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01018.RNA-Seq.genomic.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 51c8a5bb-8397-4da1-86f6-db0c81efeb4a.rna_seq.genomic.gdc_realn.bam 9689028429 BAM genomic harmonized CPTAC3 8a7d8902-3f65-4142-b7d9-f031ddf41c43 84efd9ff42fdf1af56e3282a5f44d101 { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01018.RNA-Seq.genomic.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 e1293d7f-5681-4210-bd00-4b2d578356f1.rna_seq.genomic.gdc_realn.bam 9436247146 BAM genomic harmonized CPTAC3 013aaf05-8f58-4b86-ab46-e84200076aef 1fa343e57d81540402af5a5c1e1bfa25 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01018.RNA-Seq.R1_L005.T C3N-01018 LSCC RNA-Seq tumor CPT0104930006 171109_UNC31-K00269_0090_AHLHNWBBXX_GGCTAC_S17_L005_R1_001.fastq.gz 4226217192 FASTQ R1_L005 unaligned CPTAC3 a4de5c30-791c-4edc-930a-d47ecf694598 5fdf17bfe701e3067d3f46bd84e94e82 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01018.RNA-Seq.R1_L007.A C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L007_R1_001.fastq.gz 4416913150 FASTQ R1_L007 unaligned CPTAC3 30102117-9e4f-4b22-9bd1-b129c1ff2d1a e6c93562ebeeaa5e29dbd90c92c1d34a { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01018.RNA-Seq.R2_L005.T C3N-01018 LSCC RNA-Seq tumor CPT0104930006 171109_UNC31-K00269_0090_AHLHNWBBXX_GGCTAC_S17_L005_R2_001.fastq.gz 4836971452 FASTQ R2_L005 unaligned CPTAC3 c3d91e6a-042c-459f-ba03-cdaf097640e3 69b85c4a6c19f44c8c040d13bfa7d0c1 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01018.RNA-Seq.R2_L007.A C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L007_R2_001.fastq.gz 4874949133 FASTQ R2_L007 unaligned CPTAC3 29a968a9-6cfc-4815-ae9c-06423a57d425 b0fd4b2f5863ccbf1a928bee368ffb43 { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01018.RNA-Seq.transcriptome.A.hg38 C3N-01018 LSCC RNA-Seq tissue_normal CPT0104950006 51c8a5bb-8397-4da1-86f6-db0c81efeb4a.rna_seq.transcriptome.gdc_realn.bam 11552301657 BAM transcriptome harmonized CPTAC3 2458e96b-f860-447d-8189-2c34f723676d 9dff8b8bc81526bdd90e53235c4bb2aa { 'aliquot_tag': 'ALQ_fd7f1410', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01018.RNA-Seq.transcriptome.T.hg38 C3N-01018 LSCC RNA-Seq tumor CPT0104930006 e1293d7f-5681-4210-bd00-4b2d578356f1.rna_seq.transcriptome.gdc_realn.bam 12173696406 BAM transcriptome harmonized CPTAC3 cce5e8b1-5c81-4b0b-94d5-690864438c51 33124697b6b4f01ca1d68bf1eff75738 { 'aliquot_tag': 'ALQ_723fe1b0', 'gdc_sample_type': 'Primary Tumor' } C3N-01018.WGS.A C3N-01018 LSCC WGS tissue_normal CPT0104950009 CPT0104950009.WholeGenome.RP-1303.bam 62748790744 BAM aligned CPTAC3 442e1896-1199-46a5-b935-da47bb5f839b 51f955a1681d15b51557f9fda97e7ed2 { 'aliquot_tag': 'ALQ_6dc00981', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01018.WGS.A.hg38 C3N-01018 LSCC WGS tissue_normal CPT0104950009 159fc77a-455a-46de-9c44-faa86e646fc2_wgs_gdc_realn.bam 91926512838 BAM harmonized CPTAC3 219aa7fc-a48b-4a77-8d08-b35109a33e20 2c3a8877c051d3483be6be9bfd7c8c1b { 'aliquot_tag': 'ALQ_6dc00981', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01018.WGS.N C3N-01018 LSCC WGS blood_normal CPT0107500002 CPT0107500002.WholeGenome.RP-1303.bam 64039399353 BAM aligned CPTAC3 a0f1fdc4-6bfd-48d6-86fd-bff9a8d91fa2 24c045d5f4552b40b6bcadbb18a04037 { 'aliquot_tag': 'ALQ_74d8859f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23586,16 +25464,16 @@ C3N-01019.miRNA-Seq.A C3N-01019 LUAD miRNA-Seq tissue_normal CPT0117700006 18110 C3N-01019.miRNA-Seq.A.hg38 C3N-01019 LUAD miRNA-Seq tissue_normal CPT0117700006 a3cfb1f7-bccd-41b0-b619-fa6d664b265f_mirnaseq_gdc_realn.bam 285421540 BAM harmonized CPTAC3 c2ccaa2b-0d29-4dc7-8d91-e13774e016ff b36497a8faa3f6d288dd4ac0f49d9535 { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01019.miRNA-Seq.T C3N-01019 LUAD miRNA-Seq tumor CPT0117680006 181119_UNC31-K00269_0165_AH27WCBBXY_ACTGAT_S1_L004_R1_001.unaln.bam 269200601 BAM unaligned CPTAC3 e1c7f75a-e5fd-44a7-a20d-65d676fdc50a 03506b32aaaaa08a150e2d48443059b3 { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor' } C3N-01019.miRNA-Seq.T.hg38 C3N-01019 LUAD miRNA-Seq tumor CPT0117680006 ca9e198c-01f2-4a1d-b2d7-1f1ff820d5d8_mirnaseq_gdc_realn.bam 291063049 BAM harmonized CPTAC3 2655a889-d465-42bf-92ec-47396bd8c4da 43ab9003b942bbf67ef645efab7a53c6 { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor' } -C3N-01019.RNA-Seq.chimeric.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 ae13d580-e828-4c35-af84-94301df04321.rna_seq.chimeric.gdc_realn.bam 134786876 BAM chimeric harmonized CPTAC3 ac994875-4b73-4feb-81f7-6aafbb0f9fbe 131a65f575deff5a810e94e418f2ba3f { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01019.RNA-Seq.chimeric.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 67332016-39d5-4cf0-87b5-45c4a7f6d788.rna_seq.chimeric.gdc_realn.bam 76307924 BAM chimeric harmonized CPTAC3 d5e7e62a-abf9-446d-8d47-041bbdd206d8 b2a30f0f3ae40621325b5bf6e56469e5 { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor' } -C3N-01019.RNA-Seq.genomic.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 ae13d580-e828-4c35-af84-94301df04321.rna_seq.genomic.gdc_realn.bam 8665568089 BAM genomic harmonized CPTAC3 6669e2f3-d499-4ec0-ac91-dd53996a1467 3839064640c60e593ec359d556621f43 { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01019.RNA-Seq.genomic.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 67332016-39d5-4cf0-87b5-45c4a7f6d788.rna_seq.genomic.gdc_realn.bam 8666255817 BAM genomic harmonized CPTAC3 b3d35b78-239b-40bd-8352-a4bdb37369b2 5018cf671feb23269d0bb18f1951b92a { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor' } -C3N-01019.RNA-Seq.R1_L001.A C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L001_R1_001.fastq.gz 4202397956 FASTQ R1_L001 unaligned CPTAC3 2428d363-4687-4ce3-8a94-b146fdf83a11 985d98e53de7e9d333bf6fbd53a18a1b { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01019.RNA-Seq.R1_L003.T C3N-01019 LUAD RNA-Seq tumor CPT0117680006 171109_UNC31-K00269_0091_BHMFGTBBXX_TTAGGC_S9_L003_R1_001.fastq.gz 3923610075 FASTQ R1_L003 unaligned CPTAC3 71626e11-461f-45a9-a78d-3728a072deaa ed815c179b0ec7b2f1d777541eeef735 { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor' } -C3N-01019.RNA-Seq.R2_L001.A C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L001_R2_001.fastq.gz 4600676738 FASTQ R2_L001 unaligned CPTAC3 e301ad57-81f8-4c52-8227-2762388038a8 ec4ceca55a7f76be9edf41044417f7c1 { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01019.RNA-Seq.R2_L003.T C3N-01019 LUAD RNA-Seq tumor CPT0117680006 171109_UNC31-K00269_0091_BHMFGTBBXX_TTAGGC_S9_L003_R2_001.fastq.gz 4369741544 FASTQ R2_L003 unaligned CPTAC3 12608043-b64f-44c5-bbba-8795eb26d1a7 cb100ac8af60f599d73c25fe841691a7 { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor' } -C3N-01019.RNA-Seq.transcriptome.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 ae13d580-e828-4c35-af84-94301df04321.rna_seq.transcriptome.gdc_realn.bam 9077396641 BAM transcriptome harmonized CPTAC3 49fcb52d-5397-45ee-b4ed-077a23185fea 5f44018849b46e1e8e1716b72e9ea09e { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01019.RNA-Seq.transcriptome.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 67332016-39d5-4cf0-87b5-45c4a7f6d788.rna_seq.transcriptome.gdc_realn.bam 9870608640 BAM transcriptome harmonized CPTAC3 3e10b76f-020e-4326-86be-59424acacfe5 a79805b3dcfd1ab80ff4fcb204911e47 { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor' } +C3N-01019.RNA-Seq.chimeric.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 26f40e3b-301e-45e0-a663-ce5ba150d5aa.rna_seq.chimeric.gdc_realn.bam 134771467 BAM chimeric harmonized CPTAC3 0bd2a473-1d1e-402b-a907-708f53bd6f58 66f65c9a2773357a95ac2ed7a0999f8d { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01019.RNA-Seq.chimeric.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 57fb2441-2549-432b-aa59-c1ae52c23bb4.rna_seq.chimeric.gdc_realn.bam 76293964 BAM chimeric harmonized CPTAC3 a169f2af-60d3-4a0a-865a-c55f2df0bc0f 3e6bcdc6150d6e4eaf02844ca6c981ae { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor' } +C3N-01019.RNA-Seq.genomic.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 26f40e3b-301e-45e0-a663-ce5ba150d5aa.rna_seq.genomic.gdc_realn.bam 8666489663 BAM genomic harmonized CPTAC3 20585263-4f89-45b4-aada-1aaf4b181df4 c32226ee8ff3eaedfa9ccf04c4d1186b { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01019.RNA-Seq.genomic.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 57fb2441-2549-432b-aa59-c1ae52c23bb4.rna_seq.genomic.gdc_realn.bam 8667874933 BAM genomic harmonized CPTAC3 adabcb4b-fb81-4928-b54a-af5de8a64798 8e3f0dd159212775bae232395b68d3dd { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor' } +C3N-01019.RNA-Seq.R1_L001.A C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L001_R1_001.fastq.gz 4202397956 FASTQ R1_L001 unaligned CPTAC3 2428d363-4687-4ce3-8a94-b146fdf83a11 985d98e53de7e9d333bf6fbd53a18a1b { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01019.RNA-Seq.R1_L003.T C3N-01019 LUAD RNA-Seq tumor CPT0117680006 171109_UNC31-K00269_0091_BHMFGTBBXX_TTAGGC_S9_L003_R1_001.fastq.gz 3923610075 FASTQ R1_L003 unaligned CPTAC3 71626e11-461f-45a9-a78d-3728a072deaa ed815c179b0ec7b2f1d777541eeef735 { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01019.RNA-Seq.R2_L001.A C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACTGAT_S4_L001_R2_001.fastq.gz 4600676738 FASTQ R2_L001 unaligned CPTAC3 e301ad57-81f8-4c52-8227-2762388038a8 ec4ceca55a7f76be9edf41044417f7c1 { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01019.RNA-Seq.R2_L003.T C3N-01019 LUAD RNA-Seq tumor CPT0117680006 171109_UNC31-K00269_0091_BHMFGTBBXX_TTAGGC_S9_L003_R2_001.fastq.gz 4369741544 FASTQ R2_L003 unaligned CPTAC3 12608043-b64f-44c5-bbba-8795eb26d1a7 cb100ac8af60f599d73c25fe841691a7 { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01019.RNA-Seq.transcriptome.A.hg38 C3N-01019 LUAD RNA-Seq tissue_normal CPT0117700006 26f40e3b-301e-45e0-a663-ce5ba150d5aa.rna_seq.transcriptome.gdc_realn.bam 10275634752 BAM transcriptome harmonized CPTAC3 6e4cf32f-6c11-4b53-bcfa-45dcdc415fce f15dcbb3581e570026d0a02c04df5db0 { 'aliquot_tag': 'ALQ_f2d7e013', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01019.RNA-Seq.transcriptome.T.hg38 C3N-01019 LUAD RNA-Seq tumor CPT0117680006 57fb2441-2549-432b-aa59-c1ae52c23bb4.rna_seq.transcriptome.gdc_realn.bam 11146920650 BAM transcriptome harmonized CPTAC3 84156c71-f024-40c4-8f7e-5ef33474ba12 f4fc2510c8fa450ad17fd63c3bba8a0d { 'aliquot_tag': 'ALQ_9fb7877', 'gdc_sample_type': 'Primary Tumor' } C3N-01019.WGS.A C3N-01019 LUAD WGS tissue_normal CPT0117700009 CPT0117700009.WholeGenome.RP-1303.bam 65276340698 BAM aligned CPTAC3 cc832662-73c7-4eea-9cef-2f6ab334de4b 450a47c487d5d4e83956b68e0cd5004e { 'aliquot_tag': 'ALQ_6268fd82', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01019.WGS.A.hg38 C3N-01019 LUAD WGS tissue_normal CPT0117700009 90b0c8c6-9e8d-4015-8c68-3a96adee4184_wgs_gdc_realn.bam 95671822675 BAM harmonized CPTAC3 344949ad-1a00-4dfa-8a50-45f8dee29ada 666efe5d3a13e01deb17ce4f2e3247c6 { 'aliquot_tag': 'ALQ_6268fd82', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01019.WGS.N C3N-01019 LUAD WGS blood_normal CPT0118910002 CPT0118910002.WholeGenome.RP-1303.bam 61034871670 BAM aligned CPTAC3 cd783fc6-feef-49ab-b2bf-3e7f7d7ae464 76368fc7cd53f3ee2257fcff3d7413eb { 'aliquot_tag': 'ALQ_4981c23', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23618,12 +25496,12 @@ C3N-01020.miRNA-Seq.T C3N-01020 LSCC miRNA-Seq tumor CPT0117720006 181219_UNC31- C3N-01020.miRNA-Seq.T.hg38 C3N-01020 LSCC miRNA-Seq tumor CPT0117720006 2b0a3602-d13b-43c4-9f99-610dec4fcf96_mirnaseq_gdc_realn.bam 317669156 BAM harmonized CPTAC3 c20fb282-03f1-49ff-9d4a-f3242e53c060 94d4e513aaa236bc153b50b677d55315 { 'aliquot_tag': 'ALQ_8817b373', 'gdc_sample_type': 'Primary Tumor' } C3N-01020.RNA-Seq.chimeric.A.hg38 C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 3e1eae7e-a34a-4c75-9ab8-f6b2934826e0.rna_seq.chimeric.gdc_realn.bam 28261150 BAM chimeric harmonized CPTAC3 bc035c32-3925-45c8-a840-0a097c4767c3 7c30773492ad49bcb413531eb7c0e70d { 'aliquot_tag': 'ALQ_d0482192', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01020.RNA-Seq.chimeric.T.hg38 C3N-01020 LSCC RNA-Seq tumor CPT0117720006 3b93679a-307b-4078-8871-4eb5746931ce.rna_seq.chimeric.gdc_realn.bam 31802827 BAM chimeric harmonized CPTAC3 15961d49-7425-4418-89fa-912cfd8bf469 8e6ed0485f6679f0e53877f7381e2505 { 'aliquot_tag': 'ALQ_8817b373', 'gdc_sample_type': 'Primary Tumor' } -C3N-01020.RNA-Seq.genomic.A.hg38 C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 3e1eae7e-a34a-4c75-9ab8-f6b2934826e0.rna_seq.genomic.gdc_realn.bam 9257620478 BAM genomic harmonized CPTAC3 667f5649-4ea5-4bc2-8d25-8243899dbbb6 374c129a011df7e809d68c62d510accd { 'aliquot_tag': 'ALQ_d0482192', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01020.RNA-Seq.genomic.A.hg38 C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 3e1eae7e-a34a-4c75-9ab8-f6b2934826e0.rna_seq.genomic.gdc_realn.bam 9257620478 BAM genomic harmonized CPTAC3 8221d93e-9e82-4b33-9244-76deb9389bfe 374c129a011df7e809d68c62d510accd { 'aliquot_tag': 'ALQ_d0482192', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01020.RNA-Seq.genomic.T.hg38 C3N-01020 LSCC RNA-Seq tumor CPT0117720006 3b93679a-307b-4078-8871-4eb5746931ce.rna_seq.genomic.gdc_realn.bam 9518227285 BAM genomic harmonized CPTAC3 a18ea587-1761-47ec-b0a0-6e32d92fc3bc a60a10fca8147ecf9ab6851497cced14 { 'aliquot_tag': 'ALQ_8817b373', 'gdc_sample_type': 'Primary Tumor' } -C3N-01020.RNA-Seq.R1_L006.A C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATGTCA_S21_L006_R1_001.fastq.gz 3767826549 FASTQ R1_L006 unaligned CPTAC3 eb0c01cb-bc87-493f-87ab-db4c087a9f63 4013675b85a21a3e61f8139331659406 { 'aliquot_tag': 'ALQ_d0482192', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01020.RNA-Seq.R1_L006.T C3N-01020 LSCC RNA-Seq tumor CPT0117720006 180925_UNC32-K00270_0122_BHWNF7BBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4158465649 FASTQ R1_L006 unaligned CPTAC3 87b9e4e2-6b01-4f3a-9473-eae51b82d31b d90bf682169573cd2448448260bdc5af { 'aliquot_tag': 'ALQ_8817b373', 'gdc_sample_type': 'Primary Tumor' } -C3N-01020.RNA-Seq.R2_L006.A C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATGTCA_S21_L006_R2_001.fastq.gz 3930483443 FASTQ R2_L006 unaligned CPTAC3 865cf6e7-ff53-4b09-baef-56bbad087e8c 52a1f92e25a1d49716ac3a783a65ff07 { 'aliquot_tag': 'ALQ_d0482192', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01020.RNA-Seq.R2_L006.T C3N-01020 LSCC RNA-Seq tumor CPT0117720006 180925_UNC32-K00270_0122_BHWNF7BBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4444860378 FASTQ R2_L006 unaligned CPTAC3 8fd4b92b-fff9-48ac-86d1-2d61ebfe8b86 0a10087fc090e6b9972a1d55707153cf { 'aliquot_tag': 'ALQ_8817b373', 'gdc_sample_type': 'Primary Tumor' } +C3N-01020.RNA-Seq.R1_L006.A C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATGTCA_S21_L006_R1_001.fastq.gz 3767826549 FASTQ R1_L006 unaligned CPTAC3 eb0c01cb-bc87-493f-87ab-db4c087a9f63 4013675b85a21a3e61f8139331659406 { 'aliquot_tag': 'ALQ_d0482192', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01020.RNA-Seq.R1_L006.T C3N-01020 LSCC RNA-Seq tumor CPT0117720006 180925_UNC32-K00270_0122_BHWNF7BBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4158465649 FASTQ R1_L006 unaligned CPTAC3 87b9e4e2-6b01-4f3a-9473-eae51b82d31b d90bf682169573cd2448448260bdc5af { 'aliquot_tag': 'ALQ_8817b373', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01020.RNA-Seq.R2_L006.A C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATGTCA_S21_L006_R2_001.fastq.gz 3930483443 FASTQ R2_L006 unaligned CPTAC3 865cf6e7-ff53-4b09-baef-56bbad087e8c 52a1f92e25a1d49716ac3a783a65ff07 { 'aliquot_tag': 'ALQ_d0482192', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01020.RNA-Seq.R2_L006.T C3N-01020 LSCC RNA-Seq tumor CPT0117720006 180925_UNC32-K00270_0122_BHWNF7BBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4444860378 FASTQ R2_L006 unaligned CPTAC3 8fd4b92b-fff9-48ac-86d1-2d61ebfe8b86 0a10087fc090e6b9972a1d55707153cf { 'aliquot_tag': 'ALQ_8817b373', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-01020.RNA-Seq.transcriptome.A.hg38 C3N-01020 LSCC RNA-Seq tissue_normal CPT0117770009 3e1eae7e-a34a-4c75-9ab8-f6b2934826e0.rna_seq.transcriptome.gdc_realn.bam 9825633344 BAM transcriptome harmonized CPTAC3 a6779e56-5e09-43f8-b774-fa274e8aedf8 366ac736735ac4e76620a2b65f39a1a6 { 'aliquot_tag': 'ALQ_d0482192', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01020.RNA-Seq.transcriptome.T.hg38 C3N-01020 LSCC RNA-Seq tumor CPT0117720006 3b93679a-307b-4078-8871-4eb5746931ce.rna_seq.transcriptome.gdc_realn.bam 10542938802 BAM transcriptome harmonized CPTAC3 5377b6e1-99e2-497b-9476-8c10e4595d25 b08c2ad1b48b0e1a5fe5caf91b8a40f3 { 'aliquot_tag': 'ALQ_8817b373', 'gdc_sample_type': 'Primary Tumor' } C3N-01020.WGS.A C3N-01020 LSCC WGS tissue_normal CPT0117770006 CPT0117770006.WholeGenome.RP-1303.bam 59364857670 BAM aligned CPTAC3 cf365a47-9a57-4b22-8017-56dde6977b4b 914261d2792fc9cef95757bdfb3ad784 { 'aliquot_tag': 'ALQ_40f73c03', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23648,12 +25526,12 @@ C3N-01021.miRNA-Seq.T C3N-01021 LUAD miRNA-Seq tumor CPT0104970006 181108_UNC31- C3N-01021.miRNA-Seq.T.hg38 C3N-01021 LUAD miRNA-Seq tumor CPT0104970006 23581f03-f7b1-4aab-bcf3-2094ad31aede_mirnaseq_gdc_realn.bam 210283639 BAM harmonized CPTAC3 ddc23276-a5b4-49a3-b8d9-7fcc21d1a09f 6649b439b2ec248f58d450e54db1667d { 'aliquot_tag': 'ALQ_87bf4770', 'gdc_sample_type': 'Primary Tumor' } C3N-01021.RNA-Seq.chimeric.A.hg38 C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 cc39f3ee-ae64-4800-9439-d9a1df5991ef.rna_seq.chimeric.gdc_realn.bam 40153541 BAM chimeric harmonized CPTAC3 2e9cf6f2-1d18-4c29-b6db-95805496ed22 e78e09d7a351feff09446b2610ccbb4a { 'aliquot_tag': 'ALQ_fe80d83a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01021.RNA-Seq.chimeric.T.hg38 C3N-01021 LUAD RNA-Seq tumor CPT0104970006 4ca813ae-7bd0-4f0f-8809-f81bdc070eab.rna_seq.chimeric.gdc_realn.bam 36785584 BAM chimeric harmonized CPTAC3 116a4351-abdc-408a-9f7c-87f7595c4b25 af37284da5a8ef2c5e1e559f9c78ca5a { 'aliquot_tag': 'ALQ_87bf4770', 'gdc_sample_type': 'Primary Tumor' } -C3N-01021.RNA-Seq.genomic.A.hg38 C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 cc39f3ee-ae64-4800-9439-d9a1df5991ef.rna_seq.genomic.gdc_realn.bam 5406729546 BAM genomic harmonized CPTAC3 0a46a831-36ac-4421-84e4-6682ef5345a3 68f790b57e327ef736760dbb726769f7 { 'aliquot_tag': 'ALQ_fe80d83a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01021.RNA-Seq.genomic.T.hg38 C3N-01021 LUAD RNA-Seq tumor CPT0104970006 4ca813ae-7bd0-4f0f-8809-f81bdc070eab.rna_seq.genomic.gdc_realn.bam 9344488438 BAM genomic harmonized CPTAC3 b082696f-d876-4d07-b0ad-dd5c3618fb78 742e72c689734b9407a897b7c96901d4 { 'aliquot_tag': 'ALQ_87bf4770', 'gdc_sample_type': 'Primary Tumor' } -C3N-01021.RNA-Seq.R1_L005.A C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 171215_UNC32-K00270_0072_AHN3THBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 2900719030 FASTQ R1_L005 unaligned CPTAC3 25d695db-0aa8-4265-8f02-25b4bdc16f6b 6bb7b2290ddbd519536f6f83e1fcb173 { 'aliquot_tag': 'ALQ_fe80d83a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01021.RNA-Seq.R1_L005.T C3N-01021 LUAD RNA-Seq tumor CPT0104970006 171109_UNC31-K00269_0090_AHLHNWBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 4351787179 FASTQ R1_L005 unaligned CPTAC3 fe4bc94d-b681-40dc-bde1-9615746d3f45 28526012b35cb8f626665cda5167e214 { 'aliquot_tag': 'ALQ_87bf4770', 'gdc_sample_type': 'Primary Tumor' } -C3N-01021.RNA-Seq.R2_L005.A C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 171215_UNC32-K00270_0072_AHN3THBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 2918591188 FASTQ R2_L005 unaligned CPTAC3 074561b0-dcb3-45ab-98e4-ecf1f3886d8d 7133ac0baaea9e7c0683e9e0a8187f4b { 'aliquot_tag': 'ALQ_fe80d83a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01021.RNA-Seq.R2_L005.T C3N-01021 LUAD RNA-Seq tumor CPT0104970006 171109_UNC31-K00269_0090_AHLHNWBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 4814181149 FASTQ R2_L005 unaligned CPTAC3 463940ad-cae2-4be7-bfe7-77782919f58f c28c25b74aa3f0b217c58da530a52514 { 'aliquot_tag': 'ALQ_87bf4770', 'gdc_sample_type': 'Primary Tumor' } +C3N-01021.RNA-Seq.genomic.A.hg38 C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 cc39f3ee-ae64-4800-9439-d9a1df5991ef.rna_seq.genomic.gdc_realn.bam 5406729546 BAM genomic harmonized CPTAC3 4662173f-51fc-44ea-a0dc-108134eb640e 68f790b57e327ef736760dbb726769f7 { 'aliquot_tag': 'ALQ_fe80d83a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01021.RNA-Seq.genomic.T.hg38 C3N-01021 LUAD RNA-Seq tumor CPT0104970006 4ca813ae-7bd0-4f0f-8809-f81bdc070eab.rna_seq.genomic.gdc_realn.bam 9344488438 BAM genomic harmonized CPTAC3 f3c1f810-e214-488c-9ed6-43fd3921663b 742e72c689734b9407a897b7c96901d4 { 'aliquot_tag': 'ALQ_87bf4770', 'gdc_sample_type': 'Primary Tumor' } +C3N-01021.RNA-Seq.R1_L005.A C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 171215_UNC32-K00270_0072_AHN3THBBXX_CCGTCC_S17_L005_R1_001.fastq.gz 2900719030 FASTQ R1_L005 unaligned CPTAC3 25d695db-0aa8-4265-8f02-25b4bdc16f6b 6bb7b2290ddbd519536f6f83e1fcb173 { 'aliquot_tag': 'ALQ_fe80d83a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01021.RNA-Seq.R1_L005.T C3N-01021 LUAD RNA-Seq tumor CPT0104970006 171109_UNC31-K00269_0090_AHLHNWBBXX_CTTGTA_S20_L005_R1_001.fastq.gz 4351787179 FASTQ R1_L005 unaligned CPTAC3 fe4bc94d-b681-40dc-bde1-9615746d3f45 28526012b35cb8f626665cda5167e214 { 'aliquot_tag': 'ALQ_87bf4770', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01021.RNA-Seq.R2_L005.A C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 171215_UNC32-K00270_0072_AHN3THBBXX_CCGTCC_S17_L005_R2_001.fastq.gz 2918591188 FASTQ R2_L005 unaligned CPTAC3 074561b0-dcb3-45ab-98e4-ecf1f3886d8d 7133ac0baaea9e7c0683e9e0a8187f4b { 'aliquot_tag': 'ALQ_fe80d83a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01021.RNA-Seq.R2_L005.T C3N-01021 LUAD RNA-Seq tumor CPT0104970006 171109_UNC31-K00269_0090_AHLHNWBBXX_CTTGTA_S20_L005_R2_001.fastq.gz 4814181149 FASTQ R2_L005 unaligned CPTAC3 463940ad-cae2-4be7-bfe7-77782919f58f c28c25b74aa3f0b217c58da530a52514 { 'aliquot_tag': 'ALQ_87bf4770', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-01021.RNA-Seq.transcriptome.A.hg38 C3N-01021 LUAD RNA-Seq tissue_normal CPT0105010007 cc39f3ee-ae64-4800-9439-d9a1df5991ef.rna_seq.transcriptome.gdc_realn.bam 6255914878 BAM transcriptome harmonized CPTAC3 bafe657b-c6e5-468f-9090-9cd40bdfe8b8 59a09679fdaaeb0985e5f99a356182ae { 'aliquot_tag': 'ALQ_fe80d83a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01021.RNA-Seq.transcriptome.T.hg38 C3N-01021 LUAD RNA-Seq tumor CPT0104970006 4ca813ae-7bd0-4f0f-8809-f81bdc070eab.rna_seq.transcriptome.gdc_realn.bam 11976339701 BAM transcriptome harmonized CPTAC3 b12a0c1b-12e0-45d7-b03e-f83d577e012c f5fdebfe021f6ffdcdfd070c4906dbb1 { 'aliquot_tag': 'ALQ_87bf4770', 'gdc_sample_type': 'Primary Tumor' } C3N-01021.WGS.A C3N-01021 LUAD WGS tissue_normal CPT0105010010 CPT0105010010.WholeGenome.RP-1303.bam 56980708351 BAM aligned CPTAC3 7b797502-1fe6-42fd-8ea0-26f656bdda94 aa265548667f82e57432625a53374141 { 'aliquot_tag': 'ALQ_79ff7cd8', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23676,16 +25554,16 @@ C3N-01022.miRNA-Seq.A C3N-01022 LUAD miRNA-Seq tissue_normal CPT0117820006 18110 C3N-01022.miRNA-Seq.A.hg38 C3N-01022 LUAD miRNA-Seq tissue_normal CPT0117820006 e8ff5787-3260-436e-9b7c-07480286834c_mirnaseq_gdc_realn.bam 270371251 BAM harmonized CPTAC3 9f1dbd34-0c37-4e2f-aee6-b500e3d00bb2 4ead8737a8292166b8a130ca4e262800 { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01022.miRNA-Seq.T C3N-01022 LUAD miRNA-Seq tumor CPT0117790006 181119_UNC31-K00269_0165_AH27WCBBXY_ATGAGC_S2_L004_R1_001.unaln.bam 221467585 BAM unaligned CPTAC3 77b4a9d3-77a6-4fbd-b794-4c19a4f94a18 760db0648e4d7cdaec5bbc92a4abaabc { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor' } C3N-01022.miRNA-Seq.T.hg38 C3N-01022 LUAD miRNA-Seq tumor CPT0117790006 be28b133-655a-4302-9d95-52fed80de8e9_mirnaseq_gdc_realn.bam 236496218 BAM harmonized CPTAC3 d88576a7-d243-4093-9b8c-4d404e02ac06 a1f807a751951b5569a510c47f65f8f8 { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor' } -C3N-01022.RNA-Seq.chimeric.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 797fc77c-23a7-48c0-ab0d-95b3cc1a2328.rna_seq.chimeric.gdc_realn.bam 69067222 BAM chimeric harmonized CPTAC3 ddb14fbc-abb9-4bfc-8e2b-46e618417e67 9d1904ed116b0b01307e58b93001bb36 { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01022.RNA-Seq.chimeric.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 bab744c0-9a95-4467-8bf1-687c9fe45a4e.rna_seq.chimeric.gdc_realn.bam 89618914 BAM chimeric harmonized CPTAC3 c122b777-e894-490b-862f-db1cb79a176a ef1f855d0feb6979ec62db2a38b5cb84 { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor' } -C3N-01022.RNA-Seq.genomic.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 797fc77c-23a7-48c0-ab0d-95b3cc1a2328.rna_seq.genomic.gdc_realn.bam 7526306616 BAM genomic harmonized CPTAC3 65a848b2-1ea0-4fc8-a624-a2778be81712 a8e076c4214ae3622595f670b63dc048 { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01022.RNA-Seq.genomic.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 bab744c0-9a95-4467-8bf1-687c9fe45a4e.rna_seq.genomic.gdc_realn.bam 8962265571 BAM genomic harmonized CPTAC3 29fcf665-6d35-4a74-9d80-7eb7c26964ff 66afaadad7c38c77ed58a51a1b05b719 { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor' } -C3N-01022.RNA-Seq.R1_L003.T C3N-01022 LUAD RNA-Seq tumor CPT0117790006 171109_UNC31-K00269_0091_BHMFGTBBXX_TGACCA_S11_L003_R1_001.fastq.gz 4180201255 FASTQ R1_L003 unaligned CPTAC3 e13d3f16-43bb-41ef-a12f-1d585b7a3a34 001528a5ca099256977ea2c7b1caa967 { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor' } -C3N-01022.RNA-Seq.R1_L007.A C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 180313_UNC32-K00270_0085_BHT2MGBBXX_ATTCCT_S37_L007_R1_001.fastq.gz 3663636749 FASTQ R1_L007 unaligned CPTAC3 ec1d657b-3f62-4542-a797-f0cf12ef9205 cbdf2b9d5cd7bbe28ebe358ab839c94d { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01022.RNA-Seq.R2_L003.T C3N-01022 LUAD RNA-Seq tumor CPT0117790006 171109_UNC31-K00269_0091_BHMFGTBBXX_TGACCA_S11_L003_R2_001.fastq.gz 4588964294 FASTQ R2_L003 unaligned CPTAC3 14e4f846-a99b-424d-924e-145b287431cc 5c5a8647a42a2ce052ceb64ce39a491d { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor' } -C3N-01022.RNA-Seq.R2_L007.A C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 180313_UNC32-K00270_0085_BHT2MGBBXX_ATTCCT_S37_L007_R2_001.fastq.gz 3918725289 FASTQ R2_L007 unaligned CPTAC3 6139aeb3-a7f2-4dac-9eef-9d74414d59c7 2d11cd684e6f75c6e1ae6d24a8c5cd3b { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01022.RNA-Seq.transcriptome.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 797fc77c-23a7-48c0-ab0d-95b3cc1a2328.rna_seq.transcriptome.gdc_realn.bam 8338777903 BAM transcriptome harmonized CPTAC3 e6c03f55-0c24-4707-b671-3ebf69f3a3b7 060e635e03acfe8c4a9883bbaa75a5f3 { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01022.RNA-Seq.transcriptome.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 bab744c0-9a95-4467-8bf1-687c9fe45a4e.rna_seq.transcriptome.gdc_realn.bam 10658207830 BAM transcriptome harmonized CPTAC3 40933067-555f-4e6e-ad4f-9352e81a019e 5761a40480ff8b18cf09af089ce50de7 { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor' } +C3N-01022.RNA-Seq.chimeric.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 160fc8e5-8918-4d0c-b279-ba948439f015.rna_seq.chimeric.gdc_realn.bam 69040602 BAM chimeric harmonized CPTAC3 83fd720f-044c-45d0-b4d8-d1badb298d31 7db523605a3ee91250fc1fd8424ab210 { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01022.RNA-Seq.chimeric.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 d2c607d1-6174-459e-873e-b878d0235c12.rna_seq.chimeric.gdc_realn.bam 89601635 BAM chimeric harmonized CPTAC3 7b8df212-f8ce-4d15-bf27-20706d6ce01a e9aa3015afe16405c39618b8676cb28b { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor' } +C3N-01022.RNA-Seq.genomic.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 160fc8e5-8918-4d0c-b279-ba948439f015.rna_seq.genomic.gdc_realn.bam 7527084440 BAM genomic harmonized CPTAC3 1d34ecf0-a7d2-4b44-a582-8272b6eb1c5d 17c9b4bdaf6d0425467dadba14cc8a78 { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01022.RNA-Seq.genomic.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 d2c607d1-6174-459e-873e-b878d0235c12.rna_seq.genomic.gdc_realn.bam 8963611760 BAM genomic harmonized CPTAC3 cc62afe4-5e2b-4679-8ac6-938ae64601ea 642fa0dce1cbd40bd47372209ad68a90 { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor' } +C3N-01022.RNA-Seq.R1_L003.T C3N-01022 LUAD RNA-Seq tumor CPT0117790006 171109_UNC31-K00269_0091_BHMFGTBBXX_TGACCA_S11_L003_R1_001.fastq.gz 4180201255 FASTQ R1_L003 unaligned CPTAC3 e13d3f16-43bb-41ef-a12f-1d585b7a3a34 001528a5ca099256977ea2c7b1caa967 { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01022.RNA-Seq.R1_L007.A C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 180313_UNC32-K00270_0085_BHT2MGBBXX_ATTCCT_S37_L007_R1_001.fastq.gz 3663636749 FASTQ R1_L007 unaligned CPTAC3 ec1d657b-3f62-4542-a797-f0cf12ef9205 cbdf2b9d5cd7bbe28ebe358ab839c94d { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01022.RNA-Seq.R2_L003.T C3N-01022 LUAD RNA-Seq tumor CPT0117790006 171109_UNC31-K00269_0091_BHMFGTBBXX_TGACCA_S11_L003_R2_001.fastq.gz 4588964294 FASTQ R2_L003 unaligned CPTAC3 14e4f846-a99b-424d-924e-145b287431cc 5c5a8647a42a2ce052ceb64ce39a491d { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01022.RNA-Seq.R2_L007.A C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 180313_UNC32-K00270_0085_BHT2MGBBXX_ATTCCT_S37_L007_R2_001.fastq.gz 3918725289 FASTQ R2_L007 unaligned CPTAC3 6139aeb3-a7f2-4dac-9eef-9d74414d59c7 2d11cd684e6f75c6e1ae6d24a8c5cd3b { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01022.RNA-Seq.transcriptome.A.hg38 C3N-01022 LUAD RNA-Seq tissue_normal CPT0117820006 160fc8e5-8918-4d0c-b279-ba948439f015.rna_seq.transcriptome.gdc_realn.bam 9444279913 BAM transcriptome harmonized CPTAC3 d8322313-8585-4345-954b-0f8bd83bcfc6 4641223cdd2e37071f1b174ec044fe5f { 'aliquot_tag': 'ALQ_794101a6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01022.RNA-Seq.transcriptome.T.hg38 C3N-01022 LUAD RNA-Seq tumor CPT0117790006 d2c607d1-6174-459e-873e-b878d0235c12.rna_seq.transcriptome.gdc_realn.bam 12136147588 BAM transcriptome harmonized CPTAC3 3f0c906f-17e4-486b-8b83-fa6827f4246d d7b77526333a7dd332186cdf292a0234 { 'aliquot_tag': 'ALQ_ffc78262', 'gdc_sample_type': 'Primary Tumor' } C3N-01022.WGS.A C3N-01022 LUAD WGS tissue_normal CPT0117820009 CPT0117820009.WholeGenome.RP-1303.bam 58524086782 BAM aligned CPTAC3 d18ce70e-c593-4b67-91b5-d2fd6ac678bb 68fc8bc0637368d5b76bdb9b55867222 { 'aliquot_tag': 'ALQ_e9fe1c37', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01022.WGS.A.hg38 C3N-01022 LUAD WGS tissue_normal CPT0117820009 9cbde4df-30cf-4aef-97ef-0190d2560088_wgs_gdc_realn.bam 85583028500 BAM harmonized CPTAC3 515e2de9-8103-46f3-bedc-2311709c7ee5 6588565517e2a43231f691486be7b8d6 { 'aliquot_tag': 'ALQ_e9fe1c37', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01022.WGS.N C3N-01022 LUAD WGS blood_normal CPT0119030002 CPT0119030002.WholeGenome.RP-1303.bam 64864110739 BAM aligned CPTAC3 00b529e5-e9a7-47d9-90d3-c1041bb2c29a c42b5ae5a67a429068a849ac5d3ffc1d { 'aliquot_tag': 'ALQ_ff20153f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23708,12 +25586,12 @@ C3N-01023.miRNA-Seq.T C3N-01023 LUAD miRNA-Seq tumor CPT0105060006 181119_UNC31- C3N-01023.miRNA-Seq.T.hg38 C3N-01023 LUAD miRNA-Seq tumor CPT0105060006 f8e84d81-7190-47c0-8639-bbf625e221a4_mirnaseq_gdc_realn.bam 213067762 BAM harmonized CPTAC3 11b0bb6e-72a8-40ce-9ef2-981d4543bb21 983f771de558d455654d16574af9a5cc { 'aliquot_tag': 'ALQ_3ba734bc', 'gdc_sample_type': 'Primary Tumor' } C3N-01023.RNA-Seq.chimeric.A.hg38 C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 c26fcc72-38f9-4688-8b6c-74be78aa2fa0.rna_seq.chimeric.gdc_realn.bam 97444264 BAM chimeric harmonized CPTAC3 74c13c4d-c056-4761-95cf-913913733dcb 796c39ba3c63ceec57d2218261bc0b43 { 'aliquot_tag': 'ALQ_72ab70c8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01023.RNA-Seq.chimeric.T.hg38 C3N-01023 LUAD RNA-Seq tumor CPT0105060006 21c41b6d-47ba-462d-bab6-b12792779020.rna_seq.chimeric.gdc_realn.bam 35942145 BAM chimeric harmonized CPTAC3 cc6522ed-139d-4225-83b0-b2f4e53001f7 f78df2efaa0fd2805b6506ed898bfbf6 { 'aliquot_tag': 'ALQ_3ba734bc', 'gdc_sample_type': 'Primary Tumor' } -C3N-01023.RNA-Seq.genomic.A.hg38 C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 c26fcc72-38f9-4688-8b6c-74be78aa2fa0.rna_seq.genomic.gdc_realn.bam 8989705099 BAM genomic harmonized CPTAC3 2bcfb2fa-4a70-44f5-ba46-ec5a8208f718 92b9bc364eedd829373345c341a400c4 { 'aliquot_tag': 'ALQ_72ab70c8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01023.RNA-Seq.genomic.A.hg38 C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 c26fcc72-38f9-4688-8b6c-74be78aa2fa0.rna_seq.genomic.gdc_realn.bam 8989705099 BAM genomic harmonized CPTAC3 400822a1-746e-48e3-875f-c1d022c429bb 92b9bc364eedd829373345c341a400c4 { 'aliquot_tag': 'ALQ_72ab70c8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01023.RNA-Seq.genomic.T.hg38 C3N-01023 LUAD RNA-Seq tumor CPT0105060006 21c41b6d-47ba-462d-bab6-b12792779020.rna_seq.genomic.gdc_realn.bam 8970092447 BAM genomic harmonized CPTAC3 efe9fea9-bffa-463b-9bcb-e1379ec8121a 8fa5d00cb3a0f8dbc93a9d3cec44978f { 'aliquot_tag': 'ALQ_3ba734bc', 'gdc_sample_type': 'Primary Tumor' } -C3N-01023.RNA-Seq.R1_L004.T C3N-01023 LUAD RNA-Seq tumor CPT0105060006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3885047829 FASTQ R1_L004 unaligned CPTAC3 58f7c30a-a7cd-44e3-91c6-db892b584c1c 69236b0415391dcc35bf6fb9a21cba74 { 'aliquot_tag': 'ALQ_3ba734bc', 'gdc_sample_type': 'Primary Tumor' } -C3N-01023.RNA-Seq.R1_L008.A C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L008_R1_001.fastq.gz 4245927775 FASTQ R1_L008 unaligned CPTAC3 68280a88-e5ab-4692-be16-13a8b89ab24c e706ff61d24552c3d8a782be6f790abe { 'aliquot_tag': 'ALQ_72ab70c8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01023.RNA-Seq.R2_L004.T C3N-01023 LUAD RNA-Seq tumor CPT0105060006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4223428891 FASTQ R2_L004 unaligned CPTAC3 78cdbc02-99e3-4a5e-a7a7-3032a32662e7 98f6ccb53be8c4bd08c324903d8e26f5 { 'aliquot_tag': 'ALQ_3ba734bc', 'gdc_sample_type': 'Primary Tumor' } -C3N-01023.RNA-Seq.R2_L008.A C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L008_R2_001.fastq.gz 4678324312 FASTQ R2_L008 unaligned CPTAC3 18ae465e-5ade-4c9e-9d5e-fe5dbd18deb8 cf130249fd13be5b0fc6c3f343215b04 { 'aliquot_tag': 'ALQ_72ab70c8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01023.RNA-Seq.R1_L004.T C3N-01023 LUAD RNA-Seq tumor CPT0105060006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3885047829 FASTQ R1_L004 unaligned CPTAC3 58f7c30a-a7cd-44e3-91c6-db892b584c1c 69236b0415391dcc35bf6fb9a21cba74 { 'aliquot_tag': 'ALQ_3ba734bc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01023.RNA-Seq.R1_L008.A C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L008_R1_001.fastq.gz 4245927775 FASTQ R1_L008 unaligned CPTAC3 68280a88-e5ab-4692-be16-13a8b89ab24c e706ff61d24552c3d8a782be6f790abe { 'aliquot_tag': 'ALQ_72ab70c8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01023.RNA-Seq.R2_L004.T C3N-01023 LUAD RNA-Seq tumor CPT0105060006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 4223428891 FASTQ R2_L004 unaligned CPTAC3 78cdbc02-99e3-4a5e-a7a7-3032a32662e7 98f6ccb53be8c4bd08c324903d8e26f5 { 'aliquot_tag': 'ALQ_3ba734bc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01023.RNA-Seq.R2_L008.A C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 171215_UNC32-K00270_0073_BHN3NFBBXX_AGTTCC_S10_L008_R2_001.fastq.gz 4678324312 FASTQ R2_L008 unaligned CPTAC3 18ae465e-5ade-4c9e-9d5e-fe5dbd18deb8 cf130249fd13be5b0fc6c3f343215b04 { 'aliquot_tag': 'ALQ_72ab70c8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-01023.RNA-Seq.transcriptome.A.hg38 C3N-01023 LUAD RNA-Seq tissue_normal CPT0105190006 c26fcc72-38f9-4688-8b6c-74be78aa2fa0.rna_seq.transcriptome.gdc_realn.bam 9899557127 BAM transcriptome harmonized CPTAC3 beaa4859-510e-4166-b778-7e1d3c00aaa4 79bb9afc44c97d240971701d851de270 { 'aliquot_tag': 'ALQ_72ab70c8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01023.RNA-Seq.transcriptome.T.hg38 C3N-01023 LUAD RNA-Seq tumor CPT0105060006 21c41b6d-47ba-462d-bab6-b12792779020.rna_seq.transcriptome.gdc_realn.bam 10786475447 BAM transcriptome harmonized CPTAC3 34ad78e8-31dd-4d12-8e34-93e83661ac46 be89d0cbd81f564f87dc31bd1ca92a7c { 'aliquot_tag': 'ALQ_3ba734bc', 'gdc_sample_type': 'Primary Tumor' } C3N-01023.WGS.A C3N-01023 LUAD WGS tissue_normal CPT0105190009 CPT0105190009.WholeGenome.RP-1303.bam 49144994370 BAM aligned CPTAC3 371a3deb-04e1-4dcd-ae9c-c529bc81e396 db7d017bcf2e65e4369f61d900acdd7c { 'aliquot_tag': 'ALQ_e2146d59', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23738,12 +25616,12 @@ C3N-01024.miRNA-Seq.T C3N-01024 LUAD miRNA-Seq tumor CPT0105230006 181108_UNC31- C3N-01024.miRNA-Seq.T.hg38 C3N-01024 LUAD miRNA-Seq tumor CPT0105230006 88e30154-0d0d-4080-9490-bbbb28e30c77_mirnaseq_gdc_realn.bam 200927484 BAM harmonized CPTAC3 031eb5f2-52d4-4e86-920f-a56019783f41 98679bb4dc71f81055ead6da99bff339 { 'aliquot_tag': 'ALQ_be8f1ac7', 'gdc_sample_type': 'Primary Tumor' } C3N-01024.RNA-Seq.chimeric.A.hg38 C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 7e7e9c66-4e5e-459d-a16d-755fa7d53007.rna_seq.chimeric.gdc_realn.bam 105230183 BAM chimeric harmonized CPTAC3 0c6a174e-d227-4bf3-8dc5-dcc5373e7a46 65f39eeb56cbd64a9e5c0ba143221bfe { 'aliquot_tag': 'ALQ_31cfef67', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01024.RNA-Seq.chimeric.T.hg38 C3N-01024 LUAD RNA-Seq tumor CPT0105230006 9bbc4a91-9fca-458a-8f31-dfd0f0a9009c.rna_seq.chimeric.gdc_realn.bam 29686870 BAM chimeric harmonized CPTAC3 b3b3fc80-bd1c-44fa-9e45-221c7f3cf933 63eb3f7c98444771d68ae22de4d8d603 { 'aliquot_tag': 'ALQ_be8f1ac7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01024.RNA-Seq.genomic.A.hg38 C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 7e7e9c66-4e5e-459d-a16d-755fa7d53007.rna_seq.genomic.gdc_realn.bam 8852890117 BAM genomic harmonized CPTAC3 1fcb92f2-183d-48ad-84d3-4c2c9def7254 6867be8601306d0fba3a7e868526db90 { 'aliquot_tag': 'ALQ_31cfef67', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01024.RNA-Seq.genomic.T.hg38 C3N-01024 LUAD RNA-Seq tumor CPT0105230006 9bbc4a91-9fca-458a-8f31-dfd0f0a9009c.rna_seq.genomic.gdc_realn.bam 7103899485 BAM genomic harmonized CPTAC3 b9c03386-359e-4014-ae3e-f2eeeb30e0b5 69c43dfcfb13d0062a064e5235c401fd { 'aliquot_tag': 'ALQ_be8f1ac7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01024.RNA-Seq.R1_L003.A C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 171215_UNC32-K00270_0073_BHN3NFBBXX_GGCTAC_S9_L003_R1_001.fastq.gz 4130779187 FASTQ R1_L003 unaligned CPTAC3 d3fd7b33-e340-4f70-a6df-b7be7251f916 bd9a5893f2f379856d72af0bf51b06bb { 'aliquot_tag': 'ALQ_31cfef67', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01024.RNA-Seq.R1_L006.T C3N-01024 LUAD RNA-Seq tumor CPT0105230006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTTGA_S23_L006_R1_001.fastq.gz 3212271695 FASTQ R1_L006 unaligned CPTAC3 565bbf90-d360-4748-93bf-0a41eb61a124 e7bfaa49815f2d47536c33a63dd74c2e { 'aliquot_tag': 'ALQ_be8f1ac7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01024.RNA-Seq.R2_L003.A C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 171215_UNC32-K00270_0073_BHN3NFBBXX_GGCTAC_S9_L003_R2_001.fastq.gz 4809377296 FASTQ R2_L003 unaligned CPTAC3 d39ad31f-6a7e-41b0-96c5-93194af85f8a 737830aa5bb9c1aca719aeb5a4c21c8b { 'aliquot_tag': 'ALQ_31cfef67', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01024.RNA-Seq.R2_L006.T C3N-01024 LUAD RNA-Seq tumor CPT0105230006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTTGA_S23_L006_R2_001.fastq.gz 3560629296 FASTQ R2_L006 unaligned CPTAC3 608825d7-23ea-412a-a3ea-00a6372965ea 0c205a67311d2b51c576a8e17737b3a2 { 'aliquot_tag': 'ALQ_be8f1ac7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01024.RNA-Seq.genomic.A.hg38 C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 7e7e9c66-4e5e-459d-a16d-755fa7d53007.rna_seq.genomic.gdc_realn.bam 8852890117 BAM genomic harmonized CPTAC3 7bfd253a-7db8-4122-ad31-eda5eabe7e10 6867be8601306d0fba3a7e868526db90 { 'aliquot_tag': 'ALQ_31cfef67', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01024.RNA-Seq.genomic.T.hg38 C3N-01024 LUAD RNA-Seq tumor CPT0105230006 9bbc4a91-9fca-458a-8f31-dfd0f0a9009c.rna_seq.genomic.gdc_realn.bam 7103899485 BAM genomic harmonized CPTAC3 285129a7-0907-4bad-88a5-660903dea37e 69c43dfcfb13d0062a064e5235c401fd { 'aliquot_tag': 'ALQ_be8f1ac7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01024.RNA-Seq.R1_L003.A C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 171215_UNC32-K00270_0073_BHN3NFBBXX_GGCTAC_S9_L003_R1_001.fastq.gz 4130779187 FASTQ R1_L003 unaligned CPTAC3 d3fd7b33-e340-4f70-a6df-b7be7251f916 bd9a5893f2f379856d72af0bf51b06bb { 'aliquot_tag': 'ALQ_31cfef67', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01024.RNA-Seq.R1_L006.T C3N-01024 LUAD RNA-Seq tumor CPT0105230006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTTGA_S23_L006_R1_001.fastq.gz 3212271695 FASTQ R1_L006 unaligned CPTAC3 565bbf90-d360-4748-93bf-0a41eb61a124 e7bfaa49815f2d47536c33a63dd74c2e { 'aliquot_tag': 'ALQ_be8f1ac7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01024.RNA-Seq.R2_L003.A C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 171215_UNC32-K00270_0073_BHN3NFBBXX_GGCTAC_S9_L003_R2_001.fastq.gz 4809377296 FASTQ R2_L003 unaligned CPTAC3 d39ad31f-6a7e-41b0-96c5-93194af85f8a 737830aa5bb9c1aca719aeb5a4c21c8b { 'aliquot_tag': 'ALQ_31cfef67', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-01024.RNA-Seq.R2_L006.T C3N-01024 LUAD RNA-Seq tumor CPT0105230006 171109_UNC31-K00269_0090_AHLHNWBBXX_ACTTGA_S23_L006_R2_001.fastq.gz 3560629296 FASTQ R2_L006 unaligned CPTAC3 608825d7-23ea-412a-a3ea-00a6372965ea 0c205a67311d2b51c576a8e17737b3a2 { 'aliquot_tag': 'ALQ_be8f1ac7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-01024.RNA-Seq.transcriptome.A.hg38 C3N-01024 LUAD RNA-Seq tissue_normal CPT0105250006 7e7e9c66-4e5e-459d-a16d-755fa7d53007.rna_seq.transcriptome.gdc_realn.bam 10387747052 BAM transcriptome harmonized CPTAC3 20c64422-ffcc-462e-a03b-7caeb3503ce9 7a18ced81f20099200d7087fc0c00ce0 { 'aliquot_tag': 'ALQ_31cfef67', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01024.RNA-Seq.transcriptome.T.hg38 C3N-01024 LUAD RNA-Seq tumor CPT0105230006 9bbc4a91-9fca-458a-8f31-dfd0f0a9009c.rna_seq.transcriptome.gdc_realn.bam 10425646942 BAM transcriptome harmonized CPTAC3 dae77f1f-ce71-4b3f-9cda-479beaff9e2f c05d4670f042e77f09245fbfae6346db { 'aliquot_tag': 'ALQ_be8f1ac7', 'gdc_sample_type': 'Primary Tumor' } C3N-01024.WGS.A C3N-01024 LUAD WGS tissue_normal CPT0105250009 CPT0105250009.WholeGenome.RP-1303.bam 75004313727 BAM aligned CPTAC3 ca822649-3568-4809-8176-bc9d9e14c89b a595854ab5437a4e18eed3a0d187ea17 { 'aliquot_tag': 'ALQ_a170f2f6', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23770,10 +25648,10 @@ C3N-01025.RNA-Seq.chimeric.A.hg38 C3N-01025 LSCC RNA-Seq tissue_normal CPT008399 C3N-01025.RNA-Seq.chimeric.T.hg38 C3N-01025 LSCC RNA-Seq tumor CPT0083980009 61591230-c369-41ce-9a1f-575be391859c.rna_seq.chimeric.gdc_realn.bam 65333724 BAM chimeric harmonized CPTAC3 cdb9cf90-7633-4b59-9c6e-4aeb938b3237 6885c9ba643bb1a050a6782ff6863df0 { 'aliquot_tag': 'ALQ_9469fc48', 'gdc_sample_type': 'Primary Tumor' } C3N-01025.RNA-Seq.genomic.A.hg38 C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 3969d0b0-0e63-4b7e-abb6-5732959f09b2.rna_seq.genomic.gdc_realn.bam 10596154368 BAM genomic harmonized CPTAC3 a6d2f656-0c01-43ea-98d2-1f529fe39c3e 80593f31acac505c6e9aa66fa87cf977 { 'aliquot_tag': 'ALQ_a909d5f8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01025.RNA-Seq.genomic.T.hg38 C3N-01025 LSCC RNA-Seq tumor CPT0083980009 61591230-c369-41ce-9a1f-575be391859c.rna_seq.genomic.gdc_realn.bam 11404033090 BAM genomic harmonized CPTAC3 6156be8c-fd6c-42d2-a1e7-b68e1b23d18f 118a5456f0c6914e0aabc304c600f04b { 'aliquot_tag': 'ALQ_9469fc48', 'gdc_sample_type': 'Primary Tumor' } -C3N-01025.RNA-Seq.R1_L001.A C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4760584148 FASTQ R1_L001 unaligned CPTAC3 0396eebf-431f-4be8-b767-d8715f81ac22 7102ab7bc12345060b9b4edf03ed8124 { 'aliquot_tag': 'ALQ_a909d5f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01025.RNA-Seq.R1_L007.T C3N-01025 LSCC RNA-Seq tumor CPT0083980009 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L007_R1_001.fastq.gz 4858337206 FASTQ R1_L007 unaligned CPTAC3 ee7ae4a3-09d2-41a2-8555-0415eadd7af2 b15774f57495a05d4bd2229533512792 { 'aliquot_tag': 'ALQ_9469fc48', 'gdc_sample_type': 'Primary Tumor' } -C3N-01025.RNA-Seq.R2_L001.A C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L001_R2_001.fastq.gz 5159080379 FASTQ R2_L001 unaligned CPTAC3 52a5f78a-ac2f-4387-9076-f596f043c6a0 b9490fb90fd88c2325bcb2fbe651cbe1 { 'aliquot_tag': 'ALQ_a909d5f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01025.RNA-Seq.R2_L007.T C3N-01025 LSCC RNA-Seq tumor CPT0083980009 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L007_R2_001.fastq.gz 5289739765 FASTQ R2_L007 unaligned CPTAC3 fd4cf698-cdd1-4357-a78f-2f8d0136009f eb31721e329ea1bf82a4ac017c143f45 { 'aliquot_tag': 'ALQ_9469fc48', 'gdc_sample_type': 'Primary Tumor' } +C3N-01025.RNA-Seq.R1_L001.A C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4760584148 FASTQ R1_L001 unaligned CPTAC3 0396eebf-431f-4be8-b767-d8715f81ac22 7102ab7bc12345060b9b4edf03ed8124 { 'aliquot_tag': 'ALQ_a909d5f8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01025.RNA-Seq.R1_L007.T C3N-01025 LSCC RNA-Seq tumor CPT0083980009 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L007_R1_001.fastq.gz 4858337206 FASTQ R1_L007 unaligned CPTAC3 ee7ae4a3-09d2-41a2-8555-0415eadd7af2 b15774f57495a05d4bd2229533512792 { 'aliquot_tag': 'ALQ_9469fc48', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01025.RNA-Seq.R2_L001.A C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGATGT_S2_L001_R2_001.fastq.gz 5159080379 FASTQ R2_L001 unaligned CPTAC3 52a5f78a-ac2f-4387-9076-f596f043c6a0 b9490fb90fd88c2325bcb2fbe651cbe1 { 'aliquot_tag': 'ALQ_a909d5f8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01025.RNA-Seq.R2_L007.T C3N-01025 LSCC RNA-Seq tumor CPT0083980009 170908_UNC31-K00269_0080_BHLJ52BBXX_TAGCTT_S2_L007_R2_001.fastq.gz 5289739765 FASTQ R2_L007 unaligned CPTAC3 fd4cf698-cdd1-4357-a78f-2f8d0136009f eb31721e329ea1bf82a4ac017c143f45 { 'aliquot_tag': 'ALQ_9469fc48', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01025.RNA-Seq.transcriptome.A.hg38 C3N-01025 LSCC RNA-Seq tissue_normal CPT0083990009 3969d0b0-0e63-4b7e-abb6-5732959f09b2.rna_seq.transcriptome.gdc_realn.bam 12738618653 BAM transcriptome harmonized CPTAC3 b2deb791-9a5a-47bc-9858-5ae717a0ca74 48563d27a2b03d1f47fb19428e7a8095 { 'aliquot_tag': 'ALQ_a909d5f8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01025.RNA-Seq.transcriptome.T.hg38 C3N-01025 LSCC RNA-Seq tumor CPT0083980009 61591230-c369-41ce-9a1f-575be391859c.rna_seq.transcriptome.gdc_realn.bam 12721550872 BAM transcriptome harmonized CPTAC3 3c9f0693-5be1-4b06-8bbb-cbe832f11a94 f769c907f99c3a2e0608447366b0d264 { 'aliquot_tag': 'ALQ_9469fc48', 'gdc_sample_type': 'Primary Tumor' } C3N-01025.WGS.A C3N-01025 LSCC WGS tissue_normal CPT0083990006 CPT0083990006.WholeGenome.RP-1303.bam 58363367476 BAM aligned CPTAC3 ee83c0dd-5f93-443b-a234-b17d3835740c 4f2416b0a848a28021dfe18cd65e6054 { 'aliquot_tag': 'ALQ_39b6c869', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23798,12 +25676,12 @@ C3N-01028.miRNA-Seq.T C3N-01028 LSCC miRNA-Seq tumor CPT0091050006 180828_UNC32- C3N-01028.miRNA-Seq.T.hg38 C3N-01028 LSCC miRNA-Seq tumor CPT0091050006 1c39917c-8cc6-4028-a5b2-d182f30a3ca4_mirnaseq_gdc_realn.bam 259252872 BAM harmonized CPTAC3 dad8b3ff-1a81-4726-83cf-7fa1942eefad 5176b088f9bf37cfa534d7bda702c9d1 { 'aliquot_tag': 'ALQ_807c6517', 'gdc_sample_type': 'Primary Tumor' } C3N-01028.RNA-Seq.chimeric.A.hg38 C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 af5e9627-0c56-4a0a-add5-cdd960307704.rna_seq.chimeric.gdc_realn.bam 40889093 BAM chimeric harmonized CPTAC3 e55fb1aa-d383-4e23-86fb-03aadec65fca 1af348d2c6bbfa5184ca9eafa220570f { 'aliquot_tag': 'ALQ_d5339587', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01028.RNA-Seq.chimeric.T.hg38 C3N-01028 LSCC RNA-Seq tumor CPT0091050006 5503721a-606c-48f7-aa01-531df7f6cbb7.rna_seq.chimeric.gdc_realn.bam 29698113 BAM chimeric harmonized CPTAC3 21d7c722-e7d5-4daa-9b4c-ef8537afb40c 679020d8e78463f12a34c1c487d1da9a { 'aliquot_tag': 'ALQ_807c6517', 'gdc_sample_type': 'Primary Tumor' } -C3N-01028.RNA-Seq.genomic.A.hg38 C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 af5e9627-0c56-4a0a-add5-cdd960307704.rna_seq.genomic.gdc_realn.bam 9237356884 BAM genomic harmonized CPTAC3 321f8d05-2949-4fec-bd0f-91759f69058a 9c6db449503aa4ca0d1a3663f7f4b979 { 'aliquot_tag': 'ALQ_d5339587', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01028.RNA-Seq.genomic.A.hg38 C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 af5e9627-0c56-4a0a-add5-cdd960307704.rna_seq.genomic.gdc_realn.bam 9237356884 BAM genomic harmonized CPTAC3 7e5a8543-563f-4ad3-b521-9ae64a215645 9c6db449503aa4ca0d1a3663f7f4b979 { 'aliquot_tag': 'ALQ_d5339587', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01028.RNA-Seq.genomic.T.hg38 C3N-01028 LSCC RNA-Seq tumor CPT0091050006 5503721a-606c-48f7-aa01-531df7f6cbb7.rna_seq.genomic.gdc_realn.bam 10702132282 BAM genomic harmonized CPTAC3 7e270fba-2d86-48c1-84a0-c8849a9d8604 524dbf8f2b488841bbb07596af23c11a { 'aliquot_tag': 'ALQ_807c6517', 'gdc_sample_type': 'Primary Tumor' } -C3N-01028.RNA-Seq.R1_L001.A C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3868800621 FASTQ R1_L001 unaligned CPTAC3 5da5910a-3545-4146-8fa5-625bfacc736a 18880e410c0d1c5af5f090c022c734e7 { 'aliquot_tag': 'ALQ_d5339587', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01028.RNA-Seq.R1_L002.T C3N-01028 LSCC RNA-Seq tumor CPT0091050006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L002_R1_001.fastq.gz 4241044740 FASTQ R1_L002 unaligned CPTAC3 0e502f4f-7c06-4620-a27c-93040e07ff92 08f0247aac775e11cf0296b2e8abb427 { 'aliquot_tag': 'ALQ_807c6517', 'gdc_sample_type': 'Primary Tumor' } -C3N-01028.RNA-Seq.R2_L001.A C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 4234376345 FASTQ R2_L001 unaligned CPTAC3 2103d5b9-3aa9-4c57-9b3c-d9f48ae67da2 9eb02ab2054671794ec1a33e5318c0e3 { 'aliquot_tag': 'ALQ_d5339587', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01028.RNA-Seq.R2_L002.T C3N-01028 LSCC RNA-Seq tumor CPT0091050006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4473351267 FASTQ R2_L002 unaligned CPTAC3 4d3156ee-bf4f-45ba-a0bb-d2b8d5433a22 c8f8559c2041b57a11125b85ef8b6217 { 'aliquot_tag': 'ALQ_807c6517', 'gdc_sample_type': 'Primary Tumor' } +C3N-01028.RNA-Seq.R1_L001.A C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3868800621 FASTQ R1_L001 unaligned CPTAC3 5da5910a-3545-4146-8fa5-625bfacc736a 18880e410c0d1c5af5f090c022c734e7 { 'aliquot_tag': 'ALQ_d5339587', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01028.RNA-Seq.R1_L002.T C3N-01028 LSCC RNA-Seq tumor CPT0091050006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L002_R1_001.fastq.gz 4241044740 FASTQ R1_L002 unaligned CPTAC3 0e502f4f-7c06-4620-a27c-93040e07ff92 08f0247aac775e11cf0296b2e8abb427 { 'aliquot_tag': 'ALQ_807c6517', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01028.RNA-Seq.R2_L001.A C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 4234376345 FASTQ R2_L001 unaligned CPTAC3 2103d5b9-3aa9-4c57-9b3c-d9f48ae67da2 9eb02ab2054671794ec1a33e5318c0e3 { 'aliquot_tag': 'ALQ_d5339587', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01028.RNA-Seq.R2_L002.T C3N-01028 LSCC RNA-Seq tumor CPT0091050006 171129_UNC32-K00270_0066_AHM25VBBXX_TGACCA_S7_L002_R2_001.fastq.gz 4473351267 FASTQ R2_L002 unaligned CPTAC3 4d3156ee-bf4f-45ba-a0bb-d2b8d5433a22 c8f8559c2041b57a11125b85ef8b6217 { 'aliquot_tag': 'ALQ_807c6517', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-01028.RNA-Seq.transcriptome.A.hg38 C3N-01028 LSCC RNA-Seq tissue_normal CPT0091090009 af5e9627-0c56-4a0a-add5-cdd960307704.rna_seq.transcriptome.gdc_realn.bam 10261765619 BAM transcriptome harmonized CPTAC3 cc75d01f-462c-484b-b5e9-76730ce7fdb4 73a6148bdf7450051094b8ecf2232b24 { 'aliquot_tag': 'ALQ_d5339587', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01028.RNA-Seq.transcriptome.T.hg38 C3N-01028 LSCC RNA-Seq tumor CPT0091050006 5503721a-606c-48f7-aa01-531df7f6cbb7.rna_seq.transcriptome.gdc_realn.bam 10505912014 BAM transcriptome harmonized CPTAC3 dc7b35a0-e536-495c-8b09-9fb4c1f11b9a b3a21280f5201c3e87065516d27dd7f3 { 'aliquot_tag': 'ALQ_807c6517', 'gdc_sample_type': 'Primary Tumor' } C3N-01028.WGS.A C3N-01028 LSCC WGS tissue_normal CPT0091090006 CPT0091090006.WholeGenome.RP-1303.bam 56268354201 BAM aligned CPTAC3 be93eb8e-59f1-45fe-b313-b1fb8ab5aefe e54c827b956d54010a057ef4e67e77b5 { 'aliquot_tag': 'ALQ_458c8816', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23828,12 +25706,12 @@ C3N-01030.miRNA-Seq.T C3N-01030 LUAD miRNA-Seq tumor CPT0091240006 180828_UNC32- C3N-01030.miRNA-Seq.T.hg38 C3N-01030 LUAD miRNA-Seq tumor CPT0091240006 f0d170a6-dc9d-4334-8a34-3c0ec44fd359_mirnaseq_gdc_realn.bam 266044511 BAM harmonized CPTAC3 ae3424ab-15ba-45b0-bb20-ea1b43e73ebf 44a08955a3b38b84b8dc49e8218cdd43 { 'aliquot_tag': 'ALQ_f0d4edac', 'gdc_sample_type': 'Primary Tumor' } C3N-01030.RNA-Seq.chimeric.A.hg38 C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 43a09891-8467-4a80-91da-3fd74dba8e8e.rna_seq.chimeric.gdc_realn.bam 50224722 BAM chimeric harmonized CPTAC3 c3a2f456-2850-4133-bde5-3990b92a5170 1c332886e8f79203e083edb2d7ea5ed2 { 'aliquot_tag': 'ALQ_131def76', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01030.RNA-Seq.chimeric.T.hg38 C3N-01030 LUAD RNA-Seq tumor CPT0091240006 44b21f71-3331-4025-84de-e87bbf507127.rna_seq.chimeric.gdc_realn.bam 44025327 BAM chimeric harmonized CPTAC3 b31912e7-eb1b-4d2e-b518-0d61fba86a99 5af80a42629cc0540f5c1b455bbb9b89 { 'aliquot_tag': 'ALQ_f0d4edac', 'gdc_sample_type': 'Primary Tumor' } -C3N-01030.RNA-Seq.genomic.A.hg38 C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 43a09891-8467-4a80-91da-3fd74dba8e8e.rna_seq.genomic.gdc_realn.bam 8295755699 BAM genomic harmonized CPTAC3 e81b5304-7229-4f52-a03d-a38badd9331a b959f73a06b6a2b37c027eaa90a86477 { 'aliquot_tag': 'ALQ_131def76', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01030.RNA-Seq.genomic.T.hg38 C3N-01030 LUAD RNA-Seq tumor CPT0091240006 44b21f71-3331-4025-84de-e87bbf507127.rna_seq.genomic.gdc_realn.bam 9676221765 BAM genomic harmonized CPTAC3 015839b3-1dec-4401-8441-afdc8495262c 15f6fdc36bdf1a03e1e28896b335ae3a { 'aliquot_tag': 'ALQ_f0d4edac', 'gdc_sample_type': 'Primary Tumor' } -C3N-01030.RNA-Seq.R1_L001.T C3N-01030 LUAD RNA-Seq tumor CPT0091240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 4273563787 FASTQ R1_L001 unaligned CPTAC3 c8302fca-0062-44b5-b3ee-0f8a13bfa37f 821a3bbaf2955cfa148da3fa8491b5bb { 'aliquot_tag': 'ALQ_f0d4edac', 'gdc_sample_type': 'Primary Tumor' } -C3N-01030.RNA-Seq.R1_L002.A C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L002_R1_001.fastq.gz 3916142213 FASTQ R1_L002 unaligned CPTAC3 589a0efa-cfe9-4320-957e-85719240f692 3a6316d1c94d6ec7fba99ba8c2ac0eee { 'aliquot_tag': 'ALQ_131def76', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01030.RNA-Seq.R2_L001.T C3N-01030 LUAD RNA-Seq tumor CPT0091240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4854534681 FASTQ R2_L001 unaligned CPTAC3 1ec23d45-d1f7-4de2-9539-89461d39955f cbe9bcda8349cd48c43d9325991e6cce { 'aliquot_tag': 'ALQ_f0d4edac', 'gdc_sample_type': 'Primary Tumor' } -C3N-01030.RNA-Seq.R2_L002.A C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L002_R2_001.fastq.gz 4255217192 FASTQ R2_L002 unaligned CPTAC3 7d6d2c3b-d118-4fab-bc54-54ad4136d5ca 2540b8b88dffaa1758d39b72f3d80d95 { 'aliquot_tag': 'ALQ_131def76', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01030.RNA-Seq.genomic.A.hg38 C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 43a09891-8467-4a80-91da-3fd74dba8e8e.rna_seq.genomic.gdc_realn.bam 8295755699 BAM genomic harmonized CPTAC3 2d8f4280-3bf6-4c9e-873e-230d5a127cf5 b959f73a06b6a2b37c027eaa90a86477 { 'aliquot_tag': 'ALQ_131def76', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01030.RNA-Seq.genomic.T.hg38 C3N-01030 LUAD RNA-Seq tumor CPT0091240006 44b21f71-3331-4025-84de-e87bbf507127.rna_seq.genomic.gdc_realn.bam 9676221765 BAM genomic harmonized CPTAC3 805ca5c6-6092-42b6-9456-5ff271432f94 15f6fdc36bdf1a03e1e28896b335ae3a { 'aliquot_tag': 'ALQ_f0d4edac', 'gdc_sample_type': 'Primary Tumor' } +C3N-01030.RNA-Seq.R1_L001.T C3N-01030 LUAD RNA-Seq tumor CPT0091240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 4273563787 FASTQ R1_L001 unaligned CPTAC3 c8302fca-0062-44b5-b3ee-0f8a13bfa37f 821a3bbaf2955cfa148da3fa8491b5bb { 'aliquot_tag': 'ALQ_f0d4edac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01030.RNA-Seq.R1_L002.A C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L002_R1_001.fastq.gz 3916142213 FASTQ R1_L002 unaligned CPTAC3 589a0efa-cfe9-4320-957e-85719240f692 3a6316d1c94d6ec7fba99ba8c2ac0eee { 'aliquot_tag': 'ALQ_131def76', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-01030.RNA-Seq.R2_L001.T C3N-01030 LUAD RNA-Seq tumor CPT0091240006 171129_UNC32-K00270_0066_AHM25VBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4854534681 FASTQ R2_L001 unaligned CPTAC3 1ec23d45-d1f7-4de2-9539-89461d39955f cbe9bcda8349cd48c43d9325991e6cce { 'aliquot_tag': 'ALQ_f0d4edac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01030.RNA-Seq.R2_L002.A C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 171215_UNC32-K00270_0073_BHN3NFBBXX_GTCCGC_S6_L002_R2_001.fastq.gz 4255217192 FASTQ R2_L002 unaligned CPTAC3 7d6d2c3b-d118-4fab-bc54-54ad4136d5ca 2540b8b88dffaa1758d39b72f3d80d95 { 'aliquot_tag': 'ALQ_131def76', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } C3N-01030.RNA-Seq.transcriptome.A.hg38 C3N-01030 LUAD RNA-Seq tissue_normal CPT0091260005 43a09891-8467-4a80-91da-3fd74dba8e8e.rna_seq.transcriptome.gdc_realn.bam 10092418817 BAM transcriptome harmonized CPTAC3 71450099-da36-4d65-8a0b-8b39f942af13 cd52dfddbe050133f73c682b9fa1109c { 'aliquot_tag': 'ALQ_131def76', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01030.RNA-Seq.transcriptome.T.hg38 C3N-01030 LUAD RNA-Seq tumor CPT0091240006 44b21f71-3331-4025-84de-e87bbf507127.rna_seq.transcriptome.gdc_realn.bam 11629159377 BAM transcriptome harmonized CPTAC3 7937eb71-9efc-4675-88d1-00eb8be0721b fd071adb0321d766d8bee43a3672d56f { 'aliquot_tag': 'ALQ_f0d4edac', 'gdc_sample_type': 'Primary Tumor' } C3N-01030.WGS.A C3N-01030 LUAD WGS tissue_normal CPT0091260008 CPT0091260008.WholeGenome.RP-1303.bam 53384056860 BAM aligned CPTAC3 abf466c9-a2c2-4425-9c70-4dc7c1529fbe 6aa0fa5218301a6f793730763fb96e57 { 'aliquot_tag': 'ALQ_6dac93cb', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23860,10 +25738,10 @@ C3N-01071.RNA-Seq.chimeric.A.hg38 C3N-01071 LUAD RNA-Seq tissue_normal CPT007008 C3N-01071.RNA-Seq.chimeric.T.hg38 C3N-01071 LUAD RNA-Seq tumor CPT0070060009 cb5d83a2-edf1-437a-b429-bd6ad1195f62.rna_seq.chimeric.gdc_realn.bam 33745070 BAM chimeric harmonized CPTAC3 057bf497-4971-48fc-9e17-0edab923f6c8 ef4567828de96d96063b3484c2333f53 { 'aliquot_tag': 'ALQ_e49e1bd0', 'gdc_sample_type': 'Primary Tumor' } C3N-01071.RNA-Seq.genomic.A.hg38 C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 d065e324-2d43-4d35-baf1-c18303b6ba20.rna_seq.genomic.gdc_realn.bam 8470730808 BAM genomic harmonized CPTAC3 565426a1-0037-411b-96d7-876ac8ffbd3e d86a13a375b9adcd6b1b5e3d5bd4ffd4 { 'aliquot_tag': 'ALQ_cb11b820', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01071.RNA-Seq.genomic.T.hg38 C3N-01071 LUAD RNA-Seq tumor CPT0070060009 cb5d83a2-edf1-437a-b429-bd6ad1195f62.rna_seq.genomic.gdc_realn.bam 9916193022 BAM genomic harmonized CPTAC3 80f39d21-d474-4335-bebb-06efbab2e229 811db2caa19ff4bebbcf04be695f7ca7 { 'aliquot_tag': 'ALQ_e49e1bd0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01071.RNA-Seq.R1_L002.T C3N-01071 LUAD RNA-Seq tumor CPT0070060009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L002_R1_001.fastq.gz 4537647048 FASTQ R1_L002 unaligned CPTAC3 1f0efdb6-32db-4f59-91b4-9a89cf3555ec e6e058f48f6e852808107ffe703fa52b { 'aliquot_tag': 'ALQ_e49e1bd0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01071.RNA-Seq.R1_L006.A C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 171215_UNC32-K00270_0073_BHN3NFBBXX_TTAGGC_S23_L006_R1_001.fastq.gz 4051387909 FASTQ R1_L006 unaligned CPTAC3 4c4d3540-3ac8-4f35-9431-3904ccfae26d 5dc2b368c330cf6b8fc3532eba7b1fda { 'aliquot_tag': 'ALQ_cb11b820', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01071.RNA-Seq.R2_L002.T C3N-01071 LUAD RNA-Seq tumor CPT0070060009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L002_R2_001.fastq.gz 4857174754 FASTQ R2_L002 unaligned CPTAC3 8fdcbcc3-2fd3-485d-920d-4b16188bda48 34b30c8742e73cd425abd2dffe78b7d4 { 'aliquot_tag': 'ALQ_e49e1bd0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01071.RNA-Seq.R2_L006.A C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 171215_UNC32-K00270_0073_BHN3NFBBXX_TTAGGC_S23_L006_R2_001.fastq.gz 4448966413 FASTQ R2_L006 unaligned CPTAC3 4f1d8c52-c31b-408f-9b9e-cf6b0e51529a 8b06309d728850b6517bdf7d8803a96a { 'aliquot_tag': 'ALQ_cb11b820', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01071.RNA-Seq.R1_L002.T C3N-01071 LUAD RNA-Seq tumor CPT0070060009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L002_R1_001.fastq.gz 4537647048 FASTQ R1_L002 unaligned CPTAC3 1f0efdb6-32db-4f59-91b4-9a89cf3555ec e6e058f48f6e852808107ffe703fa52b { 'aliquot_tag': 'ALQ_e49e1bd0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01071.RNA-Seq.R1_L006.A C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 171215_UNC32-K00270_0073_BHN3NFBBXX_TTAGGC_S23_L006_R1_001.fastq.gz 4051387909 FASTQ R1_L006 unaligned CPTAC3 4c4d3540-3ac8-4f35-9431-3904ccfae26d 5dc2b368c330cf6b8fc3532eba7b1fda { 'aliquot_tag': 'ALQ_cb11b820', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01071.RNA-Seq.R2_L002.T C3N-01071 LUAD RNA-Seq tumor CPT0070060009 170828_UNC31-K00269_0077_AHLF33BBXX_TAGCTT_S6_L002_R2_001.fastq.gz 4857174754 FASTQ R2_L002 unaligned CPTAC3 8fdcbcc3-2fd3-485d-920d-4b16188bda48 34b30c8742e73cd425abd2dffe78b7d4 { 'aliquot_tag': 'ALQ_e49e1bd0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01071.RNA-Seq.R2_L006.A C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 171215_UNC32-K00270_0073_BHN3NFBBXX_TTAGGC_S23_L006_R2_001.fastq.gz 4448966413 FASTQ R2_L006 unaligned CPTAC3 4f1d8c52-c31b-408f-9b9e-cf6b0e51529a 8b06309d728850b6517bdf7d8803a96a { 'aliquot_tag': 'ALQ_cb11b820', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-01071.RNA-Seq.transcriptome.A.hg38 C3N-01071 LUAD RNA-Seq tissue_normal CPT0070080006 d065e324-2d43-4d35-baf1-c18303b6ba20.rna_seq.transcriptome.gdc_realn.bam 10587750803 BAM transcriptome harmonized CPTAC3 50af55aa-58f5-49e9-ba9a-d274ff06015f 2f57c5064154dedf041683677dd4398c { 'aliquot_tag': 'ALQ_cb11b820', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01071.RNA-Seq.transcriptome.T.hg38 C3N-01071 LUAD RNA-Seq tumor CPT0070060009 cb5d83a2-edf1-437a-b429-bd6ad1195f62.rna_seq.transcriptome.gdc_realn.bam 13663244716 BAM transcriptome harmonized CPTAC3 ac3ea539-4865-43f3-9b32-ce36a2b4a9b3 76484ccbda1d2b7e7fcd76db9686e2f2 { 'aliquot_tag': 'ALQ_e49e1bd0', 'gdc_sample_type': 'Primary Tumor' } C3N-01071.Targeted.T C3N-01071 LUAD Targeted Sequencing tumor CPT0070060006 CPT0070060006.CustomSelection.RP-1303.PDO-18786.bam 7895288857 BAM aligned CPTAC3 0fcaad4c-22d4-41dd-a033-d0596730c792 0dda275d716e25453622e0a82960c5d3 { 'aliquot_tag': 'ALQ_74210641', 'gdc_sample_type': 'Primary Tumor' } @@ -23890,12 +25768,12 @@ C3N-01072.miRNA-Seq.T C3N-01072 LUAD miRNA-Seq tumor CPT0084140006 180724_UNC32- C3N-01072.miRNA-Seq.T.hg38 C3N-01072 LUAD miRNA-Seq tumor CPT0084140006 c6dad8df-9b89-43f9-b7ed-6fa834065834_mirnaseq_gdc_realn.bam 280437044 BAM harmonized CPTAC3 a7e51c5c-6ee3-4e16-9579-c46b3b1d1274 371a6df1b4c36083d56568695a67b802 { 'aliquot_tag': 'ALQ_e8d2b03b', 'gdc_sample_type': 'Primary Tumor' } C3N-01072.RNA-Seq.chimeric.A.hg38 C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 fab2447c-95cb-4fd7-94d1-b9c9674f5cf5.rna_seq.chimeric.gdc_realn.bam 60062766 BAM chimeric harmonized CPTAC3 137bbb1a-b90e-44e9-9830-29c0744e2317 a6973c416b43a5b19781fd393231ee06 { 'aliquot_tag': 'ALQ_af72caeb', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01072.RNA-Seq.chimeric.T.hg38 C3N-01072 LUAD RNA-Seq tumor CPT0084140006 2d3a1314-af5e-4982-83bb-92b37289615a.rna_seq.chimeric.gdc_realn.bam 42775123 BAM chimeric harmonized CPTAC3 980d570b-311c-490c-8fd1-f2e69eafe6e6 3bc62d29afdc323fe7680a7822e86f5c { 'aliquot_tag': 'ALQ_e8d2b03b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01072.RNA-Seq.genomic.A.hg38 C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 fab2447c-95cb-4fd7-94d1-b9c9674f5cf5.rna_seq.genomic.gdc_realn.bam 8815765170 BAM genomic harmonized CPTAC3 fcc71f14-3aa2-4cbe-a4cc-1376003e3717 675ddafac90d6e570e9d35a3e349a6ae { 'aliquot_tag': 'ALQ_af72caeb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01072.RNA-Seq.genomic.A.hg38 C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 fab2447c-95cb-4fd7-94d1-b9c9674f5cf5.rna_seq.genomic.gdc_realn.bam 8815765170 BAM genomic harmonized CPTAC3 5b4f9a66-7245-42e9-a2ad-992f7d47fd51 675ddafac90d6e570e9d35a3e349a6ae { 'aliquot_tag': 'ALQ_af72caeb', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01072.RNA-Seq.genomic.T.hg38 C3N-01072 LUAD RNA-Seq tumor CPT0084140006 2d3a1314-af5e-4982-83bb-92b37289615a.rna_seq.genomic.gdc_realn.bam 9270899583 BAM genomic harmonized CPTAC3 4e447c65-3511-4f22-aea6-f6444c02f73f ffbfc928e9f2a0c8c2a2cc54ca91daed { 'aliquot_tag': 'ALQ_e8d2b03b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01072.RNA-Seq.R1_L001.T C3N-01072 LUAD RNA-Seq tumor CPT0084140006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 4179362530 FASTQ R1_L001 unaligned CPTAC3 d10d5bc1-2946-463a-a3d0-9f96df9c5039 742381c698b003d7a621c2da2b661135 { 'aliquot_tag': 'ALQ_e8d2b03b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01072.RNA-Seq.R1_L005.A C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 171205_UNC32-K00270_0069_BHN2HGBBXX_TTAGGC_S19_L005_R1_001.fastq.gz 4245015905 FASTQ R1_L005 unaligned CPTAC3 629cd809-f46d-47f5-975c-1343d60d009f 350da5f8e00fd69fce260da85626db2d { 'aliquot_tag': 'ALQ_af72caeb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01072.RNA-Seq.R2_L001.T C3N-01072 LUAD RNA-Seq tumor CPT0084140006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 4671077451 FASTQ R2_L001 unaligned CPTAC3 3fa41767-11d9-4377-8d3b-730f2135b130 02457eeb39c967a429e9c05c97da1480 { 'aliquot_tag': 'ALQ_e8d2b03b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01072.RNA-Seq.R2_L005.A C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 171205_UNC32-K00270_0069_BHN2HGBBXX_TTAGGC_S19_L005_R2_001.fastq.gz 4441659588 FASTQ R2_L005 unaligned CPTAC3 9011b5e2-2438-40be-9b4b-6534bd6a8d87 75ee6163487ebd8b411b6322757cd9a1 { 'aliquot_tag': 'ALQ_af72caeb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01072.RNA-Seq.R1_L001.T C3N-01072 LUAD RNA-Seq tumor CPT0084140006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 4179362530 FASTQ R1_L001 unaligned CPTAC3 d10d5bc1-2946-463a-a3d0-9f96df9c5039 742381c698b003d7a621c2da2b661135 { 'aliquot_tag': 'ALQ_e8d2b03b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01072.RNA-Seq.R1_L005.A C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 171205_UNC32-K00270_0069_BHN2HGBBXX_TTAGGC_S19_L005_R1_001.fastq.gz 4245015905 FASTQ R1_L005 unaligned CPTAC3 629cd809-f46d-47f5-975c-1343d60d009f 350da5f8e00fd69fce260da85626db2d { 'aliquot_tag': 'ALQ_af72caeb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01072.RNA-Seq.R2_L001.T C3N-01072 LUAD RNA-Seq tumor CPT0084140006 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 4671077451 FASTQ R2_L001 unaligned CPTAC3 3fa41767-11d9-4377-8d3b-730f2135b130 02457eeb39c967a429e9c05c97da1480 { 'aliquot_tag': 'ALQ_e8d2b03b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01072.RNA-Seq.R2_L005.A C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 171205_UNC32-K00270_0069_BHN2HGBBXX_TTAGGC_S19_L005_R2_001.fastq.gz 4441659588 FASTQ R2_L005 unaligned CPTAC3 9011b5e2-2438-40be-9b4b-6534bd6a8d87 75ee6163487ebd8b411b6322757cd9a1 { 'aliquot_tag': 'ALQ_af72caeb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-01072.RNA-Seq.transcriptome.A.hg38 C3N-01072 LUAD RNA-Seq tissue_normal CPT0084170006 fab2447c-95cb-4fd7-94d1-b9c9674f5cf5.rna_seq.transcriptome.gdc_realn.bam 11061464622 BAM transcriptome harmonized CPTAC3 f6fea8f9-8b76-4ea5-be73-a1e4fc093119 94ad9054c2d91abad53dee03071e59b1 { 'aliquot_tag': 'ALQ_af72caeb', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01072.RNA-Seq.transcriptome.T.hg38 C3N-01072 LUAD RNA-Seq tumor CPT0084140006 2d3a1314-af5e-4982-83bb-92b37289615a.rna_seq.transcriptome.gdc_realn.bam 11018349263 BAM transcriptome harmonized CPTAC3 876eca91-8770-4ef7-a144-6fa470155185 435c1e0d239b384f8050be0a086df29b { 'aliquot_tag': 'ALQ_e8d2b03b', 'gdc_sample_type': 'Primary Tumor' } C3N-01072.WGS.A C3N-01072 LUAD WGS tissue_normal CPT0084170009 CPT0084170009.WholeGenome.RP-1303.bam 56304006242 BAM aligned CPTAC3 1f4a5eae-3fd0-46ec-b89e-71007e6fabe5 baecff9e3e93fc0604f54456fe28cb93 { 'aliquot_tag': 'ALQ_3fcdd77a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -23916,8 +25794,8 @@ C3N-01074.miRNA-Seq.T C3N-01074 LUAD miRNA-Seq tumor CPT0105270006 181108_UNC31- C3N-01074.miRNA-Seq.T.hg38 C3N-01074 LUAD miRNA-Seq tumor CPT0105270006 5284842c-30b5-4488-8444-a06be245de7a_mirnaseq_gdc_realn.bam 183642295 BAM harmonized CPTAC3 60ee0955-3e9d-44e9-b2da-125a05de80ff 295d78fb42884c18b1ffb4a78b6c51de { 'aliquot_tag': 'ALQ_4b0fbc07', 'gdc_sample_type': 'Primary Tumor' } C3N-01074.RNA-Seq.chimeric.T.hg38 C3N-01074 LUAD RNA-Seq tumor CPT0105270006 a776ce37-f507-49ac-b459-0653cfb60190.rna_seq.chimeric.gdc_realn.bam 33858279 BAM chimeric harmonized CPTAC3 df9bdae9-d5fa-45e3-99b7-ab00e9d38067 8023ec8ef717888288f254756be74928 { 'aliquot_tag': 'ALQ_4b0fbc07', 'gdc_sample_type': 'Primary Tumor' } C3N-01074.RNA-Seq.genomic.T.hg38 C3N-01074 LUAD RNA-Seq tumor CPT0105270006 a776ce37-f507-49ac-b459-0653cfb60190.rna_seq.genomic.gdc_realn.bam 8873171313 BAM genomic harmonized CPTAC3 e84c3a8a-5948-46db-a2e3-0319853eb631 605f63f113beeff8295ec02743dfa262 { 'aliquot_tag': 'ALQ_4b0fbc07', 'gdc_sample_type': 'Primary Tumor' } -C3N-01074.RNA-Seq.R1_L004.T C3N-01074 LUAD RNA-Seq tumor CPT0105270006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4026443433 FASTQ R1_L004 unaligned CPTAC3 21656919-971c-49c2-964b-4c42eee9c7b1 fcf6b46d5e446cc1873689c1f38b496f { 'aliquot_tag': 'ALQ_4b0fbc07', 'gdc_sample_type': 'Primary Tumor' } -C3N-01074.RNA-Seq.R2_L004.T C3N-01074 LUAD RNA-Seq tumor CPT0105270006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4425737679 FASTQ R2_L004 unaligned CPTAC3 79c31b21-d6e0-49fe-9e4e-23481b77ad7a c8b789eb196ebdbc9a68aef76386738c { 'aliquot_tag': 'ALQ_4b0fbc07', 'gdc_sample_type': 'Primary Tumor' } +C3N-01074.RNA-Seq.R1_L004.T C3N-01074 LUAD RNA-Seq tumor CPT0105270006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTTCC_S14_L004_R1_001.fastq.gz 4026443433 FASTQ R1_L004 unaligned CPTAC3 21656919-971c-49c2-964b-4c42eee9c7b1 fcf6b46d5e446cc1873689c1f38b496f { 'aliquot_tag': 'ALQ_4b0fbc07', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01074.RNA-Seq.R2_L004.T C3N-01074 LUAD RNA-Seq tumor CPT0105270006 171109_UNC31-K00269_0090_AHLHNWBBXX_AGTTCC_S14_L004_R2_001.fastq.gz 4425737679 FASTQ R2_L004 unaligned CPTAC3 79c31b21-d6e0-49fe-9e4e-23481b77ad7a c8b789eb196ebdbc9a68aef76386738c { 'aliquot_tag': 'ALQ_4b0fbc07', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-01074.RNA-Seq.transcriptome.T.hg38 C3N-01074 LUAD RNA-Seq tumor CPT0105270006 a776ce37-f507-49ac-b459-0653cfb60190.rna_seq.transcriptome.gdc_realn.bam 12374657307 BAM transcriptome harmonized CPTAC3 e3f7bc16-2f36-4765-bcc6-83d014a235a8 2b54ea0882952255bb98278cc0f79677 { 'aliquot_tag': 'ALQ_4b0fbc07', 'gdc_sample_type': 'Primary Tumor' } C3N-01074.WGS.N C3N-01074 LUAD WGS blood_normal CPT0107740002 CPT0107740002.WholeGenome.RP-1303.bam 58863976811 BAM aligned CPTAC3 b5ab50b1-3dee-4016-af64-72ff391a9a6c cceaca4955ef9fc72c2a6a7fa0474c00 { 'aliquot_tag': 'ALQ_cc908254', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01074.WGS.N.hg38 C3N-01074 LUAD WGS blood_normal CPT0107740002 ba41c945-fc52-4c8e-b417-c26730c05dfb_wgs_gdc_realn.bam 87202550854 BAM harmonized CPTAC3 7c3c4966-40ee-433a-b1e6-f526fc0b3085 4b4782453908a2a442a6bf4014621365 { 'aliquot_tag': 'ALQ_cc908254', 'gdc_sample_type': 'Blood Derived Normal' } @@ -23935,16 +25813,16 @@ C3N-01077.miRNA-Seq.A C3N-01077 CCRCC miRNA-Seq tissue_normal CPT0210800009 1902 C3N-01077.miRNA-Seq.A.hg38 C3N-01077 CCRCC miRNA-Seq tissue_normal CPT0210800009 814e4fd0-5c79-47d3-b2ba-a2a82f89de69_mirnaseq_gdc_realn.bam 262114274 BAM harmonized CPTAC3 044c64f1-f5ec-4ee1-acd4-2df5757c0551 eccdbf63267214dd3e9e6d87d432a9bc { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01077.miRNA-Seq.T C3N-01077 CCRCC miRNA-Seq tumor CPT0210780009 190130_UNC31-K00269_0188_BH2FGCBBXY_GAGTGG_S26_L008_R1_001.unaln.bam 206989939 BAM unaligned CPTAC3 99c48127-7e01-49b0-8c98-47e62ebced76 ff12716971c56a107ef9eeef609f60e9 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor' } C3N-01077.miRNA-Seq.T.hg38 C3N-01077 CCRCC miRNA-Seq tumor CPT0210780009 1e62bf3c-00ed-4288-b629-42ef355a4bf7_mirnaseq_gdc_realn.bam 222882292 BAM harmonized CPTAC3 44c934cf-fe58-4bb2-b8a1-67745c3161f8 09ab846c8caf8ec8114ebf44ed6e6754 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor' } -C3N-01077.RNA-Seq.chimeric.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 43813ef7-c80d-41a4-9f69-5bf9979c0014.rna_seq.chimeric.gdc_realn.bam 64527828 BAM chimeric harmonized CPTAC3 a122036d-7425-4b54-a836-5427a67340aa 65f141af417f3babd0bc3fb02738cb8d { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01077.RNA-Seq.chimeric.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 8fd25f70-10d1-4b4d-a610-8503fe0959b3.rna_seq.chimeric.gdc_realn.bam 315588194 BAM chimeric harmonized CPTAC3 01664eb5-7ce1-49a9-8b98-0e65a565a897 14c0ee226c7a7867e5a4a54b3b0b3ca8 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor' } -C3N-01077.RNA-Seq.genomic.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 43813ef7-c80d-41a4-9f69-5bf9979c0014.rna_seq.genomic.gdc_realn.bam 8364618311 BAM genomic harmonized CPTAC3 1f31dd98-b437-4d8f-95a3-cd409c272140 c4ef27a1301fda4bdcf9bf1b8f977e05 { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01077.RNA-Seq.genomic.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 8fd25f70-10d1-4b4d-a610-8503fe0959b3.rna_seq.genomic.gdc_realn.bam 8030392174 BAM genomic harmonized CPTAC3 635c12dd-4c83-4d0f-a80f-2e77ff7f9dc3 ea114738e7932bdbba70dc57e0e76026 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor' } -C3N-01077.RNA-Seq.R1_L004.A C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTCAA_S15_L004_R1_001.fastq.gz 3988195464 FASTQ R1_L004 unaligned CPTAC3 aee315a1-3280-4128-8aaa-c4accc4fc3b1 58b3d59443d95fb92ea1b71319dd723d { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01077.RNA-Seq.R1_L004.T C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 3523068878 FASTQ R1_L004 unaligned CPTAC3 9f7e6538-ae79-4aa9-97b6-da7b44fda3f3 00ed944bf8b10a147fdc35b8dc7bd104 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor' } -C3N-01077.RNA-Seq.R2_L004.A C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTCAA_S15_L004_R2_001.fastq.gz 4281849447 FASTQ R2_L004 unaligned CPTAC3 f2452eaa-c386-44e5-bc04-c397f13982d7 ffd6f2e18e116828b3cd47be334333e1 { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01077.RNA-Seq.R2_L004.T C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 3819871107 FASTQ R2_L004 unaligned CPTAC3 4b877408-30d0-4212-807e-27918248a90a 3ef8573a339da74cb304a5a086baa219 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor' } -C3N-01077.RNA-Seq.transcriptome.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 43813ef7-c80d-41a4-9f69-5bf9979c0014.rna_seq.transcriptome.gdc_realn.bam 8632123571 BAM transcriptome harmonized CPTAC3 904f8880-9b8c-4f17-b99e-0e1f4185f3d9 59ab28f5916a2cd252d6d3e33f241a1f { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01077.RNA-Seq.transcriptome.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 8fd25f70-10d1-4b4d-a610-8503fe0959b3.rna_seq.transcriptome.gdc_realn.bam 7640474425 BAM transcriptome harmonized CPTAC3 35cfdc64-ec33-437c-aa4d-466d2f4520ca 9a8598ef6cdb3fef548d3b14903adc42 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor' } +C3N-01077.RNA-Seq.chimeric.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 4b6961e8-a841-4f49-b30c-aed5e9ef19a2.rna_seq.chimeric.gdc_realn.bam 64524914 BAM chimeric harmonized CPTAC3 b8737694-7f6e-4bf7-96e0-881ebaa60394 fc7a547ed7e3e042cfe9d3cdfa9ddf2d { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01077.RNA-Seq.chimeric.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 b56df4e6-ac08-4b34-97fb-3cd523e2e782.rna_seq.chimeric.gdc_realn.bam 315561600 BAM chimeric harmonized CPTAC3 e691fabb-4f2c-4063-bc00-87117bb15154 de1f172aedec98801490a6803931047a { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor' } +C3N-01077.RNA-Seq.genomic.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 4b6961e8-a841-4f49-b30c-aed5e9ef19a2.rna_seq.genomic.gdc_realn.bam 8366122461 BAM genomic harmonized CPTAC3 ea5ed8cb-f6ef-4730-a5b1-6bcef8e7189b 6361bbf2d7ffeadf769cade653770625 { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01077.RNA-Seq.genomic.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 b56df4e6-ac08-4b34-97fb-3cd523e2e782.rna_seq.genomic.gdc_realn.bam 8031638426 BAM genomic harmonized CPTAC3 7c4d1bee-8ccd-4841-a5e4-f1c04729951c d4a6f2af0cc73096efba5da155fa7937 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor' } +C3N-01077.RNA-Seq.R1_L004.A C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTCAA_S15_L004_R1_001.fastq.gz 3988195464 FASTQ R1_L004 unaligned CPTAC3 aee315a1-3280-4128-8aaa-c4accc4fc3b1 58b3d59443d95fb92ea1b71319dd723d { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01077.RNA-Seq.R1_L004.T C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTGAT_S13_L004_R1_001.fastq.gz 3523068878 FASTQ R1_L004 unaligned CPTAC3 9f7e6538-ae79-4aa9-97b6-da7b44fda3f3 00ed944bf8b10a147fdc35b8dc7bd104 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01077.RNA-Seq.R2_L004.A C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTCAA_S15_L004_R2_001.fastq.gz 4281849447 FASTQ R2_L004 unaligned CPTAC3 f2452eaa-c386-44e5-bc04-c397f13982d7 ffd6f2e18e116828b3cd47be334333e1 { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01077.RNA-Seq.R2_L004.T C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACTGAT_S13_L004_R2_001.fastq.gz 3819871107 FASTQ R2_L004 unaligned CPTAC3 4b877408-30d0-4212-807e-27918248a90a 3ef8573a339da74cb304a5a086baa219 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01077.RNA-Seq.transcriptome.A.hg38 C3N-01077 CCRCC RNA-Seq tissue_normal CPT0210800009 4b6961e8-a841-4f49-b30c-aed5e9ef19a2.rna_seq.transcriptome.gdc_realn.bam 9881760587 BAM transcriptome harmonized CPTAC3 3d042701-aa6b-42f7-968f-d4658e57f166 2f2c1c27a0575bbdf026fcbd095cfd50 { 'aliquot_tag': 'ALQ_6f144d1c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01077.RNA-Seq.transcriptome.T.hg38 C3N-01077 CCRCC RNA-Seq tumor CPT0210780009 b56df4e6-ac08-4b34-97fb-3cd523e2e782.rna_seq.transcriptome.gdc_realn.bam 8609711178 BAM transcriptome harmonized CPTAC3 dffb1970-ff80-4708-b518-5a27fe86c1a2 34faf5ed07a3d74102715a63ed78b187 { 'aliquot_tag': 'ALQ_ae32b408', 'gdc_sample_type': 'Primary Tumor' } C3N-01077.WGS.N C3N-01077 CCRCC WGS blood_normal CPT0210880002 CPT0210880002.WholeGenome.RP-1303.bam 56342561416 BAM aligned CPTAC3 0b94d3f3-26a9-4a92-b22d-8f774bc4e389 3ae300ac8ca77961ded9389c208f55e1 { 'aliquot_tag': 'ALQ_c8b6df55', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01077.WGS.N.hg38 C3N-01077 CCRCC WGS blood_normal CPT0210880002 7cdf15b4-931f-4160-94fb-e8c95cce48da_wgs_gdc_realn.bam 83758844541 BAM harmonized CPTAC3 67f42b9f-dab7-4404-8b1a-2e6a0956df6c 2b6542c2b473851cac89378ff73b0499 { 'aliquot_tag': 'ALQ_c8b6df55', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01077.WGS.T C3N-01077 CCRCC WGS tumor CPT0210780006 CPT0210780006.WholeGenome.RP-1303.bam 55637314177 BAM aligned CPTAC3 918fe0b9-8e93-42ec-b368-8f83a6605f24 320bac013e3ac05d25a658b10d9f669a { 'aliquot_tag': 'ALQ_3e8da999', 'gdc_sample_type': 'Primary Tumor' } @@ -23963,16 +25841,16 @@ C3N-01078.miRNA-Seq.A C3N-01078 CCRCC miRNA-Seq tissue_normal CPT0210980009 1902 C3N-01078.miRNA-Seq.A.hg38 C3N-01078 CCRCC miRNA-Seq tissue_normal CPT0210980009 f6ead397-09bd-42a1-8a77-87ca59160446_mirnaseq_gdc_realn.bam 264655061 BAM harmonized CPTAC3 4eef7a37-b95f-476f-a55f-c29958a87e87 d2bf0c9512576aa7aaf6073689fdb37c { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01078.miRNA-Seq.T C3N-01078 CCRCC miRNA-Seq tumor CPT0210950009 190130_UNC31-K00269_0188_BH2FGCBBXY_GGTAGC_S27_L008_R1_001.unaln.bam 223128195 BAM unaligned CPTAC3 456eb8e7-8ffc-48c6-8790-5db4ca485a71 9658499b09e08b21f8468ed89be6251b { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor' } C3N-01078.miRNA-Seq.T.hg38 C3N-01078 CCRCC miRNA-Seq tumor CPT0210950009 8001c1bb-a50d-428f-850c-d54970ba6fca_mirnaseq_gdc_realn.bam 243856594 BAM harmonized CPTAC3 bcd2a430-8862-4fb1-9deb-3ace48947385 1569104ad6b55d6c266052dc584d6708 { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01078.RNA-Seq.chimeric.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 1f91793e-9c58-47b9-9f82-9e1b2e8709e3.rna_seq.chimeric.gdc_realn.bam 64585716 BAM chimeric harmonized CPTAC3 22865e66-dd24-4509-964f-d17580be542a 3049872a81c9271ac416c84d8be04083 { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01078.RNA-Seq.chimeric.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 f3505b4c-7f0d-4078-8bf6-190e155e7321.rna_seq.chimeric.gdc_realn.bam 294592625 BAM chimeric harmonized CPTAC3 2a2f7917-f4b7-40cb-aa68-93dca28a22f6 27e976877300b9f5ddc2d442b4040217 { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01078.RNA-Seq.genomic.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 1f91793e-9c58-47b9-9f82-9e1b2e8709e3.rna_seq.genomic.gdc_realn.bam 7713643417 BAM genomic harmonized CPTAC3 919c69fa-b3a4-47b8-b8b5-5ed9c82b1385 65431c6b71da9f23aff82fbf8307b3dc { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01078.RNA-Seq.genomic.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 f3505b4c-7f0d-4078-8bf6-190e155e7321.rna_seq.genomic.gdc_realn.bam 7132878297 BAM genomic harmonized CPTAC3 c34782ef-fd9a-4fa2-9829-c40dd671eb9c 54e17b1512aed71741dfe8782aac7510 { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01078.RNA-Seq.R1_L004.A C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTTCC_S14_L004_R1_001.fastq.gz 3682795915 FASTQ R1_L004 unaligned CPTAC3 5d1dc0e1-abc8-478e-aee3-73e2cb7558a0 a585216cc67a43ceb15f1a4b020bd264 { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01078.RNA-Seq.R1_L004.T C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 3141262435 FASTQ R1_L004 unaligned CPTAC3 8c91e7bf-c519-4b69-8798-cd10db557252 25dcd8cf984ecd377a3e8f3da82b923b { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01078.RNA-Seq.R2_L004.A C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTTCC_S14_L004_R2_001.fastq.gz 4003399707 FASTQ R2_L004 unaligned CPTAC3 b696440c-1e71-45e5-bf40-9c8683bd642f 85fdb56975fbe75aa7462da288861cd7 { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01078.RNA-Seq.R2_L004.T C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 3442927992 FASTQ R2_L004 unaligned CPTAC3 51d973dd-a9df-49e4-ac0d-641eb0816428 ac60558c89575a45e846090fcf27fc33 { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01078.RNA-Seq.transcriptome.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 1f91793e-9c58-47b9-9f82-9e1b2e8709e3.rna_seq.transcriptome.gdc_realn.bam 7536426702 BAM transcriptome harmonized CPTAC3 66dc0e8e-7749-4a49-aab9-57ab953bf9b6 dda7e77a3318426bca2371d6241ab046 { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01078.RNA-Seq.transcriptome.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 f3505b4c-7f0d-4078-8bf6-190e155e7321.rna_seq.transcriptome.gdc_realn.bam 7126418385 BAM transcriptome harmonized CPTAC3 d5d84df4-7eed-49b8-8c52-7ea923280c58 d0c9cb3a4573b6e23bec966507db2d8f { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor' } +C3N-01078.RNA-Seq.chimeric.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 0ab2b22c-9315-45ec-8e4f-986ef3a5d3a0.rna_seq.chimeric.gdc_realn.bam 64564537 BAM chimeric harmonized CPTAC3 d830279a-06b7-4192-a46f-654142d0b9a4 a24bf84b7578e919adceed1476df9909 { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01078.RNA-Seq.chimeric.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 0202da27-181a-45b1-94c1-4f8df450c90b.rna_seq.chimeric.gdc_realn.bam 294546323 BAM chimeric harmonized CPTAC3 551f723f-6dfb-4835-bbbd-1b32e39545bc d6b46835cffec92c782e602d37c83aee { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor' } +C3N-01078.RNA-Seq.genomic.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 0ab2b22c-9315-45ec-8e4f-986ef3a5d3a0.rna_seq.genomic.gdc_realn.bam 7714760138 BAM genomic harmonized CPTAC3 a65497ca-87af-449b-a1a3-004e74bebfbf 107214b30c055b0f66973b7f09eebd00 { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01078.RNA-Seq.genomic.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 0202da27-181a-45b1-94c1-4f8df450c90b.rna_seq.genomic.gdc_realn.bam 7133938771 BAM genomic harmonized CPTAC3 5c3fce88-cb85-4af1-8fc0-fc6f5ee581ee 9fcdbd251adedcaba84acf98982654e9 { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor' } +C3N-01078.RNA-Seq.R1_L004.A C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTTCC_S14_L004_R1_001.fastq.gz 3682795915 FASTQ R1_L004 unaligned CPTAC3 5d1dc0e1-abc8-478e-aee3-73e2cb7558a0 a585216cc67a43ceb15f1a4b020bd264 { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01078.RNA-Seq.R1_L004.T C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATTCCT_S16_L004_R1_001.fastq.gz 3141262435 FASTQ R1_L004 unaligned CPTAC3 8c91e7bf-c519-4b69-8798-cd10db557252 25dcd8cf984ecd377a3e8f3da82b923b { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01078.RNA-Seq.R2_L004.A C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 190208_UNC32-K00270_0145_AH3VHMBBXY_AGTTCC_S14_L004_R2_001.fastq.gz 4003399707 FASTQ R2_L004 unaligned CPTAC3 b696440c-1e71-45e5-bf40-9c8683bd642f 85fdb56975fbe75aa7462da288861cd7 { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01078.RNA-Seq.R2_L004.T C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATTCCT_S16_L004_R2_001.fastq.gz 3442927992 FASTQ R2_L004 unaligned CPTAC3 51d973dd-a9df-49e4-ac0d-641eb0816428 ac60558c89575a45e846090fcf27fc33 { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01078.RNA-Seq.transcriptome.A.hg38 C3N-01078 CCRCC RNA-Seq tissue_normal CPT0210980009 0ab2b22c-9315-45ec-8e4f-986ef3a5d3a0.rna_seq.transcriptome.gdc_realn.bam 8644156407 BAM transcriptome harmonized CPTAC3 55d90514-e879-4ac7-9de2-e3f98a31f1aa 91352fd5135f60d77de23644c9a600dd { 'aliquot_tag': 'ALQ_9438d578', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01078.RNA-Seq.transcriptome.T.hg38 C3N-01078 CCRCC RNA-Seq tumor CPT0210950009 0202da27-181a-45b1-94c1-4f8df450c90b.rna_seq.transcriptome.gdc_realn.bam 8153581491 BAM transcriptome harmonized CPTAC3 0fb2ebf2-1ef1-4419-be18-54c05f7c0797 bc39e981779e350551c19cccc268b939 { 'aliquot_tag': 'ALQ_6ca811c9', 'gdc_sample_type': 'Primary Tumor' } C3N-01078.WGS.N C3N-01078 CCRCC WGS blood_normal CPT0211060002 CPT0211060002.WholeGenome.RP-1303.bam 60127947410 BAM aligned CPTAC3 d94e17fa-7ca7-4869-aab7-c03ed8803501 053fe3968fad4883e6a7e133776b63a1 { 'aliquot_tag': 'ALQ_3da2e8ed', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01078.WGS.N.hg38 C3N-01078 CCRCC WGS blood_normal CPT0211060002 39017d3f-1ff1-4601-821b-45d047bc48f5_wgs_gdc_realn.bam 88613823777 BAM harmonized CPTAC3 61b2db31-9677-4e24-a6fc-408b882f26bd e1511b036fb12b3fa5d316f7170aa30a { 'aliquot_tag': 'ALQ_3da2e8ed', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01078.WGS.T C3N-01078 CCRCC WGS tumor CPT0210950006 CPT0210950006.WholeGenome.RP-1303.bam 58712936452 BAM aligned CPTAC3 285efe95-18a9-4000-b20a-9042a5277030 1c7869c57d83d9619577fa93b48de087 { 'aliquot_tag': 'ALQ_fc170c58', 'gdc_sample_type': 'Primary Tumor' } @@ -23987,13 +25865,16 @@ C3N-01079.MethArray.Green.T C3N-01079 UCEC Methylation Array tumor CPT0211120007 C3N-01079.MethArray.Red.T C3N-01079 UCEC Methylation Array tumor CPT0211120007 203561620162_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 b4490f98-e888-4119-b419-bad1786bf02e 87d8ddf313f4d37f4c7c2e1e128d07f1 { 'aliquot_tag': 'ALQ_73146907', 'gdc_sample_type': 'Primary Tumor' } C3N-01079.miRNA-Seq.T C3N-01079 UCEC miRNA-Seq tumor CPT0211120010 190508_UNC31-K00269_0215_BH7FYKBBXY_GAGTGG_S23_L004_R1_001.unaln.bam 254832821 BAM unaligned CPTAC3 c997f379-64d9-473d-aa75-435be851f2c3 2013b571bfc5e9578f150c0cb129b1b8 { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor' } C3N-01079.miRNA-Seq.T.hg38 C3N-01079 UCEC miRNA-Seq tumor CPT0211120010 9d400e7a-9ff8-4c84-bcbb-e65a1e8e8222_mirnaseq_gdc_realn.bam 292940631 BAM harmonized CPTAC3 2f59f988-d460-439a-a9f3-7a3cb4cda3e8 e03c1ce7484147ae547c174219de57e4 { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01079.RNA-Seq.chimeric.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 0d59c255-3baa-410e-8bf4-65a3ad6105b6.rna_seq.chimeric.gdc_realn.bam 35068933 BAM chimeric harmonized CPTAC3 0a27abdc-7d21-4a70-a2a3-65c7939f1e2e 4e83203b051d4170385275b9c38bdea9 { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01079.RNA-Seq.genomic.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 0d59c255-3baa-410e-8bf4-65a3ad6105b6.rna_seq.genomic.gdc_realn.bam 10304484101 BAM genomic harmonized CPTAC3 d1279038-75a5-4310-8a2a-7bfd86d29fe4 f65a51fb9ca9f1b1912ce5d00d4d1796 { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01079.RNA-Seq.R1_L005.T C3N-01079 UCEC RNA-Seq tumor CPT0211120010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACTCGTGT-ATTGGAAC_S17_L005_R1_001.fastq.gz 4451240610 FASTQ R1_L005 unaligned CPTAC3 54477041-7f9b-446c-b28f-da855cd3206e 172804c87a0a6d5f08b735041f3af57d { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01079.RNA-Seq.R1_.T C3N-01079 UCEC RNA-Seq tumor CPT0365930001 20210714_P1_F10_WB7988_plate1_S70_R1_001.fastq.gz 2600057148 FASTQ R1_ unaligned CPTAC3 f6993c9e-fdb5-4bab-851f-c278fea90818 f08b0286ddda199092a41aceda8bee4d { 'aliquot_tag': 'ALQ_a2b55ea6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01079.RNA-Seq.R2_L005.T C3N-01079 UCEC RNA-Seq tumor CPT0211120010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACTCGTGT-ATTGGAAC_S17_L005_R2_001.fastq.gz 5104018517 FASTQ R2_L005 unaligned CPTAC3 3c890e56-0f9d-4bc8-bdfb-91f4a3764825 26cf1a8318cc3be189b03a5ace875d18 { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01079.RNA-Seq.R2_.T C3N-01079 UCEC RNA-Seq tumor CPT0365930001 20210714_P1_F10_WB7988_plate1_S70_R2_001.fastq.gz 2851881484 FASTQ R2_ unaligned CPTAC3 4fffb0cc-4f99-42bd-9db7-f332bd495995 2cc90402af969e898c567e48f48fa98d { 'aliquot_tag': 'ALQ_a2b55ea6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01079.RNA-Seq.transcriptome.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 0d59c255-3baa-410e-8bf4-65a3ad6105b6.rna_seq.transcriptome.gdc_realn.bam 13822626535 BAM transcriptome harmonized CPTAC3 8506ca89-866d-4542-8b39-98002dd8e7b4 fe325ce4ae8cc6819eaeab5299064dfb { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01079.RNA-Seq.chimeric.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 00d9a1a8-e6f0-4d00-88d8-a0034fe1d75b.rna_seq.chimeric.gdc_realn.bam 35056149 BAM chimeric harmonized CPTAC3 205c1239-4e79-47e8-a881-38d4519247a7 207010b8eb678a396933d03251ffe271 { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01079.RNA-Seq.chimeric.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0365930001 c3b562b8-295b-4c9c-b7ef-8424c9e6a218.rna_seq.chimeric.gdc_realn.bam 12828803 BAM chimeric harmonized CPTAC3 69429182-f5ae-4d82-aed4-a7fce320facf 63d7c5e9a532076482911e2c65e59d6a { 'aliquot_tag': 'ALQ_a2b55ea6', 'gdc_sample_type': 'Primary Tumor' } +C3N-01079.RNA-Seq.genomic.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 00d9a1a8-e6f0-4d00-88d8-a0034fe1d75b.rna_seq.genomic.gdc_realn.bam 10306363264 BAM genomic harmonized CPTAC3 8adaa78a-ee74-48fe-8723-a95f0ef0531b 260089723f2d928067f0a5a7ca5a0375 { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01079.RNA-Seq.genomic.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0365930001 c3b562b8-295b-4c9c-b7ef-8424c9e6a218.rna_seq.genomic.gdc_realn.bam 5679338053 BAM genomic harmonized CPTAC3 ce178419-c649-406a-a64e-cbab68d89a06 8a0c7096254211f9e645668720f8d304 { 'aliquot_tag': 'ALQ_a2b55ea6', 'gdc_sample_type': 'Primary Tumor' } +C3N-01079.RNA-Seq.R1_L005.T C3N-01079 UCEC RNA-Seq tumor CPT0211120010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACTCGTGT-ATTGGAAC_S17_L005_R1_001.fastq.gz 4451240610 FASTQ R1_L005 unaligned CPTAC3 54477041-7f9b-446c-b28f-da855cd3206e 172804c87a0a6d5f08b735041f3af57d { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01079.RNA-Seq.R2_L005.T C3N-01079 UCEC RNA-Seq tumor CPT0211120010 190523_UNC32-K00270_0176_BH7CW7BBXY_ACTCGTGT-ATTGGAAC_S17_L005_R2_001.fastq.gz 5104018517 FASTQ R2_L005 unaligned CPTAC3 3c890e56-0f9d-4bc8-bdfb-91f4a3764825 26cf1a8318cc3be189b03a5ace875d18 { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01079.RNA-Seq.T C3N-01079 UCEC RNA-Seq tumor CPT0365930001 20210714_P1_F10_WB7988_plate1_S70_R1_001.fastq.gz 2600057148 FASTQ unaligned CPTAC3 f6993c9e-fdb5-4bab-851f-c278fea90818 f08b0286ddda199092a41aceda8bee4d +C3N-01079.RNA-Seq.T C3N-01079 UCEC RNA-Seq tumor CPT0365930001 20210714_P1_F10_WB7988_plate1_S70_R2_001.fastq.gz 2851881484 FASTQ unaligned CPTAC3 4fffb0cc-4f99-42bd-9db7-f332bd495995 2cc90402af969e898c567e48f48fa98d +C3N-01079.RNA-Seq.transcriptome.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0211120010 00d9a1a8-e6f0-4d00-88d8-a0034fe1d75b.rna_seq.transcriptome.gdc_realn.bam 15789022524 BAM transcriptome harmonized CPTAC3 f23df052-ce85-495c-bbc6-c91a0a634ed9 2fe588d348360a2c9d9a24504cbb3217 { 'aliquot_tag': 'ALQ_f46bcde5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01079.RNA-Seq.transcriptome.T.hg38 C3N-01079 UCEC RNA-Seq tumor CPT0365930001 c3b562b8-295b-4c9c-b7ef-8424c9e6a218.rna_seq.transcriptome.gdc_realn.bam 4173513626 BAM transcriptome harmonized CPTAC3 a981e3ef-dacd-49bd-b037-54ce172a7fb5 acf50e6a0e61e6c484f47ef9e22d1083 { 'aliquot_tag': 'ALQ_a2b55ea6', 'gdc_sample_type': 'Primary Tumor' } C3N-01079.WGS.N C3N-01079 UCEC WGS blood_normal CPT0211240002 CPT0211240002.WholeGenome.RP-1303.bam 85830791142 BAM aligned CPTAC3 e51feaef-7da9-48d4-bfc6-c8d947313b2f 42f5cf8f689be3497fab4902d8129a47 { 'aliquot_tag': 'ALQ_aaa1a86', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01079.WGS.N.hg38 C3N-01079 UCEC WGS blood_normal CPT0211240002 58064c6a-c59b-435e-8f15-b2c4e6f35923_wgs_gdc_realn.bam 128014194117 BAM harmonized CPTAC3 9d32085d-ee83-4029-bdf6-f71aa6dd6219 91b33a92acac59e62f87cce9b62dd368 { 'aliquot_tag': 'ALQ_aaa1a86', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01079.WGS.T C3N-01079 UCEC WGS tumor CPT0211120007 CPT0211120007.WholeGenome.RP-1303.bam 61711677083 BAM aligned CPTAC3 d4eb3abd-7c25-494c-9c9c-35d5d2b0ae12 5f706484bd48b412d0b845f303dbfb0c { 'aliquot_tag': 'ALQ_73146907', 'gdc_sample_type': 'Primary Tumor' } @@ -24010,16 +25891,16 @@ C3N-01080.miRNA-Seq.A C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 1902 C3N-01080.miRNA-Seq.A.hg38 C3N-01080 CCRCC miRNA-Seq tissue_normal CPT0211340009 18ce9d8b-99ea-4066-881e-30a64794f027_mirnaseq_gdc_realn.bam 168386415 BAM harmonized CPTAC3 78da683a-28d7-429a-b614-8625551df795 0ccf896a6340720e33fe69102668c789 { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01080.miRNA-Seq.T C3N-01080 CCRCC miRNA-Seq tumor CPT0211320009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L001_R1_001.unaln.bam 161252414 BAM unaligned CPTAC3 b2f6166e-aa30-4aa2-88a7-06fe374083e6 b6335a9878162f607c55f3a106816d4f { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor' } C3N-01080.miRNA-Seq.T.hg38 C3N-01080 CCRCC miRNA-Seq tumor CPT0211320009 73d6a58d-7d4a-4038-80eb-2375acdff9ef_mirnaseq_gdc_realn.bam 177900370 BAM harmonized CPTAC3 8161e185-b873-4d01-9dfe-d0abe28d3595 d60c963cd9a57a5c6654b0cec9c13a1b { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01080.RNA-Seq.chimeric.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 e1e435c1-c8c3-4a4b-b10a-e5c112051383.rna_seq.chimeric.gdc_realn.bam 48748243 BAM chimeric harmonized CPTAC3 5ce4f593-8b83-4d4f-9d25-fab4fd9309d5 9d7e497a67c1bbcd904f3e55572a257e { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01080.RNA-Seq.chimeric.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 cfd6b91c-75d2-4c6a-8148-4d91b051e803.rna_seq.chimeric.gdc_realn.bam 336304468 BAM chimeric harmonized CPTAC3 6d233f36-2dca-41fe-9b68-6680ac8e1c32 5f2ef2df16243740c5578e68f53de6ae { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01080.RNA-Seq.genomic.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 e1e435c1-c8c3-4a4b-b10a-e5c112051383.rna_seq.genomic.gdc_realn.bam 7820488075 BAM genomic harmonized CPTAC3 ea5e8ab7-1718-4b1f-b531-04506cebf479 39041a044763aff6b445a66cd0c7b280 { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01080.RNA-Seq.genomic.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 cfd6b91c-75d2-4c6a-8148-4d91b051e803.rna_seq.genomic.gdc_realn.bam 8636063906 BAM genomic harmonized CPTAC3 9506b50e-740e-4c95-aea0-f4029554b829 30f4671737d824db5e7ebca7af4284b4 { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01080.RNA-Seq.R1_L004.A C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATGTCA_S13_L004_R1_001.fastq.gz 3666040235 FASTQ R1_L004 unaligned CPTAC3 af2bf584-a484-47a1-9943-fcb724e8d988 a536135413a1d2aa709dcfc56ffa1aa8 { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01080.RNA-Seq.R1_L005.T C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATCACG_S19_L005_R1_001.fastq.gz 3829466058 FASTQ R1_L005 unaligned CPTAC3 1b0efbb7-7368-48f5-9055-ab24b5b92b5e 49968cdfa14d7cbd086bfba73c05df8b { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01080.RNA-Seq.R2_L004.A C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATGTCA_S13_L004_R2_001.fastq.gz 3958534977 FASTQ R2_L004 unaligned CPTAC3 c29a8380-beb8-44d0-b3df-99baf6f63a44 fc4476bb1c71c3ac60bf982b755546ec { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01080.RNA-Seq.R2_L005.T C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATCACG_S19_L005_R2_001.fastq.gz 3612647989 FASTQ R2_L005 unaligned CPTAC3 af7ab2d9-a4fa-4122-8214-16ca279cb8c3 a36804c8df4694404a6ce3da6205f682 { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01080.RNA-Seq.transcriptome.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 e1e435c1-c8c3-4a4b-b10a-e5c112051383.rna_seq.transcriptome.gdc_realn.bam 8119740191 BAM transcriptome harmonized CPTAC3 e4e9b6b2-ee84-4cd6-b739-20b8b91e83ac 27bf474de5f1ab6d4345d81989dc18fb { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01080.RNA-Seq.transcriptome.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 cfd6b91c-75d2-4c6a-8148-4d91b051e803.rna_seq.transcriptome.gdc_realn.bam 7709665955 BAM transcriptome harmonized CPTAC3 f9160887-58a9-4779-8d6c-4956e3bbfc92 551e1f5ced57c7c01fa1148cf430e2c6 { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01080.RNA-Seq.chimeric.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 3d4bceb8-3a54-44d7-b8d6-2a6fe5c947a3.rna_seq.chimeric.gdc_realn.bam 48725042 BAM chimeric harmonized CPTAC3 6f32ed3a-c5a3-40b0-943b-36fb1a9357c4 8e5487f642d63093cb030bcef9ce9af9 { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01080.RNA-Seq.chimeric.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 45eb6a3d-11d7-435f-8ff9-70fa95717bbe.rna_seq.chimeric.gdc_realn.bam 336260806 BAM chimeric harmonized CPTAC3 5ecd239b-a214-4ba6-854e-cb1250b07a26 69ac964a04219e92fff45843f19e9685 { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01080.RNA-Seq.genomic.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 3d4bceb8-3a54-44d7-b8d6-2a6fe5c947a3.rna_seq.genomic.gdc_realn.bam 7821691328 BAM genomic harmonized CPTAC3 af855c02-5221-48af-b047-83425a7734ee 50792f4b4a5f1f2e95186909fc04b7b2 { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01080.RNA-Seq.genomic.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 45eb6a3d-11d7-435f-8ff9-70fa95717bbe.rna_seq.genomic.gdc_realn.bam 8637157054 BAM genomic harmonized CPTAC3 965e0238-ebc6-4ea8-9d2c-af257507d8fb 31c1d8c26629b920af765bd8833dd68f { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01080.RNA-Seq.R1_L004.A C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATGTCA_S13_L004_R1_001.fastq.gz 3666040235 FASTQ R1_L004 unaligned CPTAC3 af2bf584-a484-47a1-9943-fcb724e8d988 a536135413a1d2aa709dcfc56ffa1aa8 { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01080.RNA-Seq.R1_L005.T C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATCACG_S19_L005_R1_001.fastq.gz 3829466058 FASTQ R1_L005 unaligned CPTAC3 1b0efbb7-7368-48f5-9055-ab24b5b92b5e 49968cdfa14d7cbd086bfba73c05df8b { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01080.RNA-Seq.R2_L004.A C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATGTCA_S13_L004_R2_001.fastq.gz 3958534977 FASTQ R2_L004 unaligned CPTAC3 c29a8380-beb8-44d0-b3df-99baf6f63a44 fc4476bb1c71c3ac60bf982b755546ec { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01080.RNA-Seq.R2_L005.T C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 190201_UNC31-K00269_0189_AH3L7FBBXY_ATCACG_S19_L005_R2_001.fastq.gz 3612647989 FASTQ R2_L005 unaligned CPTAC3 af7ab2d9-a4fa-4122-8214-16ca279cb8c3 a36804c8df4694404a6ce3da6205f682 { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01080.RNA-Seq.transcriptome.A.hg38 C3N-01080 CCRCC RNA-Seq tissue_normal CPT0211340009 3d4bceb8-3a54-44d7-b8d6-2a6fe5c947a3.rna_seq.transcriptome.gdc_realn.bam 9283029119 BAM transcriptome harmonized CPTAC3 cd3f813c-872d-4916-afca-da4e620449ce 64d8a5071c498d3c5cb9aca6823da8d0 { 'aliquot_tag': 'ALQ_562410ab', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01080.RNA-Seq.transcriptome.T.hg38 C3N-01080 CCRCC RNA-Seq tumor CPT0211320009 45eb6a3d-11d7-435f-8ff9-70fa95717bbe.rna_seq.transcriptome.gdc_realn.bam 8774775736 BAM transcriptome harmonized CPTAC3 d012ecc3-59bc-481e-b7fb-e897333f94b7 7e716322e34a1381200eecbaa7d21a20 { 'aliquot_tag': 'ALQ_d964e50b', 'gdc_sample_type': 'Primary Tumor' } C3N-01080.WGS.N C3N-01080 CCRCC WGS blood_normal CPT0211420002 CPT0211420002.WholeGenome.RP-1303.bam 57836617097 BAM aligned CPTAC3 e56cc957-a8d5-4a2d-9046-5229f25bb8d3 459e8efb7fe2126b8f1fbfe92599f22a { 'aliquot_tag': 'ALQ_53b30c3b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01080.WGS.N.hg38 C3N-01080 CCRCC WGS blood_normal CPT0211420002 66196c34-bbe5-404d-8793-db1494f8c66b_wgs_gdc_realn.bam 85377793352 BAM harmonized CPTAC3 32a8def8-5de4-44ba-ae07-944c05931e16 9b8ec3e44fd71e7e85fb3f175896f6a4 { 'aliquot_tag': 'ALQ_53b30c3b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01080.WGS.T C3N-01080 CCRCC WGS tumor CPT0211320006 CPT0211320006.WholeGenome.RP-1303.bam 71991748739 BAM aligned CPTAC3 8a069d14-7ecf-40e9-be35-5618e948818e 5635e83ddf9a463e0ee9effe0bab489d { 'aliquot_tag': 'ALQ_49dbf89a', 'gdc_sample_type': 'Primary Tumor' } @@ -24038,20 +25919,21 @@ C3N-01081.miRNA-Seq.A C3N-01081 CCRCC miRNA-Seq tissue_normal CPT0211520009 1902 C3N-01081.miRNA-Seq.A.hg38 C3N-01081 CCRCC miRNA-Seq tissue_normal CPT0211520009 5f6d21d9-75ca-4759-a6f1-5cd728f9b856_mirnaseq_gdc_realn.bam 271158565 BAM harmonized CPTAC3 d6f71cb6-d957-4b58-8bc2-91b3f2c33c50 9b8163869ae4d9a3bfe5f78499bcc56d { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01081.miRNA-Seq.T C3N-01081 CCRCC miRNA-Seq tumor CPT0211500009 190206_UNC31-K00269_0191_AH2WY5BBXY_GGTAGC_S26_L002_R1_001.unaln.bam 294930222 BAM unaligned CPTAC3 3451ff46-b65a-49af-9d41-d6b60b18455d 33d25276a97bf99e1ba75886f6f8f877 { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor' } C3N-01081.miRNA-Seq.T.hg38 C3N-01081 CCRCC miRNA-Seq tumor CPT0211500009 9ce1fc0a-7325-458e-b820-a910196c1a40_mirnaseq_gdc_realn.bam 321075910 BAM harmonized CPTAC3 7cc077ec-c95b-4b47-aa3c-69fb02ed9f02 019ce8774c4fa3a3afce53bf45387dbd { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor' } -C3N-01081.RNA-Seq.chimeric.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 937de85c-e5f8-4ddc-8e2f-0d2cf572c84e.rna_seq.chimeric.gdc_realn.bam 45228480 BAM chimeric harmonized CPTAC3 15425ed6-3533-4de0-9680-91e4fbba693d 43f8085b83a3e6368c76375029eddac5 { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01081.RNA-Seq.chimeric.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 0974bc45-7f50-4f1b-8fcd-afc0245ee9d8.rna_seq.chimeric.gdc_realn.bam 112414687 BAM chimeric harmonized CPTAC3 55d873d6-de68-4aa1-8b3e-473cdad489e5 fe113cb7ca4dd05f40a520b3f2d72b87 { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor' } -C3N-01081.RNA-Seq.genomic.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 937de85c-e5f8-4ddc-8e2f-0d2cf572c84e.rna_seq.genomic.gdc_realn.bam 8912057375 BAM genomic harmonized CPTAC3 e921e237-82b7-404d-8304-3ae3c8b4faa7 d8b1d2bb474a29cbf7ba0201d7b0fa60 { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01081.RNA-Seq.genomic.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 0974bc45-7f50-4f1b-8fcd-afc0245ee9d8.rna_seq.genomic.gdc_realn.bam 9211157070 BAM genomic harmonized CPTAC3 43be7a40-5248-44a5-ab7a-8f4c7b0047c9 e07d4c318300ced13c6037a233ca4f9c { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor' } -C3N-01081.RNA-Seq.R1_L004.A C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 190208_UNC32-K00270_0145_AH3VHMBBXY_CCGTCC_S16_L004_R1_001.fastq.gz 4110484031 FASTQ R1_L004 unaligned CPTAC3 c096803d-1211-4ff6-9789-363c78938d50 e89b9a427be7af652412cc82c8724fba { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01081.RNA-Seq.R1_L007.T C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L007_R1_001.fastq.gz 3996736881 FASTQ R1_L007 unaligned CPTAC3 92e0b24e-3a04-4bce-9f43-d9abe7b03953 026da4fab9bb8a3258be1cf23fd76579 { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor' } -C3N-01081.RNA-Seq.R2_L004.A C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 190208_UNC32-K00270_0145_AH3VHMBBXY_CCGTCC_S16_L004_R2_001.fastq.gz 4001855477 FASTQ R2_L004 unaligned CPTAC3 41f22f79-9720-42e3-ba7e-396f98675542 cfa2ebb7a58bec4f171238e29d2f47a6 { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01081.RNA-Seq.R2_L007.T C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L007_R2_001.fastq.gz 4406408914 FASTQ R2_L007 unaligned CPTAC3 52994f4c-cc76-44a6-a732-0c3f6aa8bc85 ffc1772ad781e2d174f928641ad037e9 { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor' } -C3N-01081.RNA-Seq.transcriptome.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 937de85c-e5f8-4ddc-8e2f-0d2cf572c84e.rna_seq.transcriptome.gdc_realn.bam 8008168091 BAM transcriptome harmonized CPTAC3 685161d1-835b-40c9-992f-ffc476b5a898 87bd3140fc150df75552edae6373fe8e { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01081.RNA-Seq.transcriptome.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 0974bc45-7f50-4f1b-8fcd-afc0245ee9d8.rna_seq.transcriptome.gdc_realn.bam 8166777570 BAM transcriptome harmonized CPTAC3 5d34ab32-04eb-473b-9264-c80b63f0a1b5 2a3cea9a558882920672ee970deda977 { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor' } +C3N-01081.RNA-Seq.chimeric.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 53dafbc5-48e0-432a-8c23-c7b920e4eee4.rna_seq.chimeric.gdc_realn.bam 45202239 BAM chimeric harmonized CPTAC3 8110fa83-039a-4994-95ac-1050d4d24bee 86fa59aacbec50a9a93fcaab46711094 { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01081.RNA-Seq.chimeric.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 98817402-ff5d-4a2a-a1bd-8081ec7823ac.rna_seq.chimeric.gdc_realn.bam 112390601 BAM chimeric harmonized CPTAC3 fbb0943b-f81f-446a-8244-217a67b8bd3a 2e71f80715636ed87d1d0c548f935c74 { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor' } +C3N-01081.RNA-Seq.genomic.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 53dafbc5-48e0-432a-8c23-c7b920e4eee4.rna_seq.genomic.gdc_realn.bam 8913352721 BAM genomic harmonized CPTAC3 b3ca2641-5c6d-4593-ab69-de2304a3b72a b645901121f95981af3d3a9fd5b14292 { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01081.RNA-Seq.genomic.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 98817402-ff5d-4a2a-a1bd-8081ec7823ac.rna_seq.genomic.gdc_realn.bam 9212493991 BAM genomic harmonized CPTAC3 4b81215d-21f8-40c9-ac75-f8c1f3fde6b6 8bb79d64fe6ae62d4af8bb14b9081b25 { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor' } +C3N-01081.RNA-Seq.R1_L004.A C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 190208_UNC32-K00270_0145_AH3VHMBBXY_CCGTCC_S16_L004_R1_001.fastq.gz 4110484031 FASTQ R1_L004 unaligned CPTAC3 c096803d-1211-4ff6-9789-363c78938d50 e89b9a427be7af652412cc82c8724fba { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01081.RNA-Seq.R1_L007.T C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L007_R1_001.fastq.gz 3996736881 FASTQ R1_L007 unaligned CPTAC3 92e0b24e-3a04-4bce-9f43-d9abe7b03953 026da4fab9bb8a3258be1cf23fd76579 { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01081.RNA-Seq.R2_L004.A C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 190208_UNC32-K00270_0145_AH3VHMBBXY_CCGTCC_S16_L004_R2_001.fastq.gz 4001855477 FASTQ R2_L004 unaligned CPTAC3 41f22f79-9720-42e3-ba7e-396f98675542 cfa2ebb7a58bec4f171238e29d2f47a6 { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01081.RNA-Seq.R2_L007.T C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L007_R2_001.fastq.gz 4406408914 FASTQ R2_L007 unaligned CPTAC3 52994f4c-cc76-44a6-a732-0c3f6aa8bc85 ffc1772ad781e2d174f928641ad037e9 { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01081.RNA-Seq.transcriptome.A.hg38 C3N-01081 CCRCC RNA-Seq tissue_normal CPT0211520009 53dafbc5-48e0-432a-8c23-c7b920e4eee4.rna_seq.transcriptome.gdc_realn.bam 9124929678 BAM transcriptome harmonized CPTAC3 5ac410a6-2956-42e1-b354-208d3c1b4434 4334510897eb3bc9981badfb670dd9c2 { 'aliquot_tag': 'ALQ_f3d0616', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01081.RNA-Seq.transcriptome.T.hg38 C3N-01081 CCRCC RNA-Seq tumor CPT0211500009 98817402-ff5d-4a2a-a1bd-8081ec7823ac.rna_seq.transcriptome.gdc_realn.bam 9313350035 BAM transcriptome harmonized CPTAC3 30c29831-b74a-490b-bbd5-d6f52a42339d 1c76fae12a0e326ab37d02d337d24012 { 'aliquot_tag': 'ALQ_75fd5576', 'gdc_sample_type': 'Primary Tumor' } C3N-01081.WGS.N C3N-01081 CCRCC WGS blood_normal CPT0211600002 CPT0211600002.WholeGenome.RP-1303.bam 49737781821 BAM aligned CPTAC3 cde3b374-2a72-43b9-bf88-a4b1134ab056 3e8db787a0c4e0f88959ec4dc8b56199 { 'aliquot_tag': 'ALQ_64bbfe50', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01081.WGS.N.hg38 C3N-01081 CCRCC WGS blood_normal CPT0211600002 05e6699a-46ac-41e6-bac6-19c1138d4636_wgs_gdc_realn.bam 73794382846 BAM harmonized CPTAC3 3b05533b-8d12-4eed-b3ac-9a33d860340d 1104db018fd32d2cc9960025d0dcb67e { 'aliquot_tag': 'ALQ_64bbfe50', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01081.WGS.T C3N-01081 CCRCC WGS tumor CPT0211500006 CPT0211500006.WholeGenome.RP-1303.bam 62249511619 BAM aligned CPTAC3 d5c17ad3-a178-446e-84be-cda12dfd0e17 5f18c1e2a256db452230c8057ad4caa4 { 'aliquot_tag': 'ALQ_e54248e7', 'gdc_sample_type': 'Primary Tumor' } C3N-01081.WGS.T C3N-01081 CCRCC WGS tumor CPT0211500006 CPT0211500006.WholeGenome.RP-2158.bam 21078135651 BAM aligned CPTAC3 07ff5254-4f83-4306-b657-5b2e0c0dda3b f502c3675022fc0070dd8cb4932ba9da { 'aliquot_tag': 'ALQ_e54248e7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01081.WGS.T.hg38 C3N-01081 CCRCC WGS tumor CPT0211500006 6ef0ff93-2030-442c-a43f-3f0eaa5fbd32_wgs_gdc_realn.bam 155131738524 BAM harmonized CPTAC3 337fa121-24be-47ee-bb31-4e7f0338e1e6 ee3991d028912f5793b299f52c396cca { 'aliquot_tag': 'ALQ_e54248e7', 'gdc_sample_type': 'Primary Tumor' } C3N-01081.WGS.T.hg38 C3N-01081 CCRCC WGS tumor CPT0211500006 6ef0ff93-2030-442c-a43f-3f0eaa5fbd32_wgs_gdc_realn.bam 88840459680 BAM harmonized CPTAC3 7c17d033-fe1b-43ca-ac52-78cbe64b9cab 6c9d7b26a6c6cc8e674109b5cfd8a3b9 { 'aliquot_tag': 'ALQ_e54248e7', 'gdc_sample_type': 'Primary Tumor' } C3N-01081.WXS.A C3N-01081 CCRCC WXS tissue_normal CPT0211520006 CPT0211520006.WholeExome.RP-1303.bam 22660728697 BAM aligned CPTAC3 a9cffd30-089b-46dd-ba07-bc07c9eb8491 9862f307df0922c27c2560c21f6dd89f { 'aliquot_tag': 'ALQ_9f821b87', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01081.WXS.A.hg38 C3N-01081 CCRCC WXS tissue_normal CPT0211520006 15e271d7-eeb1-458a-99ae-f0230f4646d2_wxs_gdc_realn.bam 30785130706 BAM harmonized CPTAC3 8286e58d-3bbe-47a9-a6ef-b515892beac8 b9854ac8dab638a3c886ecae902dc645 { 'aliquot_tag': 'ALQ_9f821b87', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -24067,16 +25949,16 @@ C3N-01082.miRNA-Seq.A C3N-01082 CCRCC miRNA-Seq tissue_normal CPT0211700009 1902 C3N-01082.miRNA-Seq.A.hg38 C3N-01082 CCRCC miRNA-Seq tissue_normal CPT0211700009 84ce8f2b-8dd9-435b-9888-baace6bd1649_mirnaseq_gdc_realn.bam 218037366 BAM harmonized CPTAC3 48d2c776-8d9a-4e2c-9be8-c4ac1e74a772 d87e1713f9b2c0b1b0cd40a78da14e7d { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01082.miRNA-Seq.T C3N-01082 CCRCC miRNA-Seq tumor CPT0211680009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATGAGC_S2_L001_R1_001.unaln.bam 157805673 BAM unaligned CPTAC3 d03bff6b-e061-4f92-9a82-72966ced4031 7a2ce55313e86b41e64e29554821c76f { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor' } C3N-01082.miRNA-Seq.T.hg38 C3N-01082 CCRCC miRNA-Seq tumor CPT0211680009 58adfa5b-033f-4dce-9002-ed76c2894859_mirnaseq_gdc_realn.bam 170978644 BAM harmonized CPTAC3 11ef1da4-0930-4d0c-ad22-81d23c163f21 50e965c626e0a0705578860378c78c66 { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor' } -C3N-01082.RNA-Seq.chimeric.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 ee6336ba-cbde-4af5-9031-5ac6fa6a1a43.rna_seq.chimeric.gdc_realn.bam 57464511 BAM chimeric harmonized CPTAC3 41abfa5d-66ab-4cc0-8395-dff0b4af8d36 c9c8d5a00fa390c1ee75c3ced9747149 { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01082.RNA-Seq.chimeric.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 edb2070b-eceb-4e17-ac98-82cf643673f0.rna_seq.chimeric.gdc_realn.bam 274241853 BAM chimeric harmonized CPTAC3 e7f66fb4-2eff-45db-91c6-8aaa79d4093e 316a0c9032f2cce3fcd36d4bf330cf0d { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor' } -C3N-01082.RNA-Seq.genomic.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 ee6336ba-cbde-4af5-9031-5ac6fa6a1a43.rna_seq.genomic.gdc_realn.bam 11574349996 BAM genomic harmonized CPTAC3 68098113-d7ba-4899-8809-ab63c1d9a1e9 139c76a8186440964475a36a720f4501 { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01082.RNA-Seq.genomic.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 edb2070b-eceb-4e17-ac98-82cf643673f0.rna_seq.genomic.gdc_realn.bam 6984711483 BAM genomic harmonized CPTAC3 3cc099fb-b7ea-4e5d-9430-02c4ac3f17f4 2058962b611d4712054bdb8db7aa722d { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor' } -C3N-01082.RNA-Seq.R1_L005.A C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L005_R1_001.fastq.gz 5571935814 FASTQ R1_L005 unaligned CPTAC3 2754e1db-72ff-4296-930c-a14dcae963e4 a52baf2db4802302bab2eeb6ea8db1ff { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01082.RNA-Seq.R1_L005.T C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 190201_UNC31-K00269_0189_AH3L7FBBXY_CGATGT_S18_L005_R1_001.fastq.gz 3139277370 FASTQ R1_L005 unaligned CPTAC3 4843ac3c-7ff4-4b51-9c10-796827bd15f5 5714c1195fd016bb516c22bd24fc5884 { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor' } -C3N-01082.RNA-Seq.R2_L005.A C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L005_R2_001.fastq.gz 6102461447 FASTQ R2_L005 unaligned CPTAC3 57e38ac6-2520-4c34-9158-9ce202821d6d 5e8079213872e5221be63e07dfc11ae1 { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01082.RNA-Seq.R2_L005.T C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 190201_UNC31-K00269_0189_AH3L7FBBXY_CGATGT_S18_L005_R2_001.fastq.gz 3334223376 FASTQ R2_L005 unaligned CPTAC3 3ebde143-6c0a-474e-8d54-cb149cdd5a2e caab69140cf3453d14d5809b4e94d870 { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor' } -C3N-01082.RNA-Seq.transcriptome.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 ee6336ba-cbde-4af5-9031-5ac6fa6a1a43.rna_seq.transcriptome.gdc_realn.bam 13265279027 BAM transcriptome harmonized CPTAC3 42607bcd-fca1-42d2-96da-e4906f75f92f 8bd3e94a942eec5a336e7f1f98d39c0a { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01082.RNA-Seq.transcriptome.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 edb2070b-eceb-4e17-ac98-82cf643673f0.rna_seq.transcriptome.gdc_realn.bam 7476848696 BAM transcriptome harmonized CPTAC3 8a0058a8-779d-4cf5-a484-cdbc362661fe 259ec70583619a9d46f2a82a30a37c1e { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor' } +C3N-01082.RNA-Seq.chimeric.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 e22ff732-755c-4e9b-a67d-4810c55b7586.rna_seq.chimeric.gdc_realn.bam 57444253 BAM chimeric harmonized CPTAC3 f8109f1a-1ea8-4901-b3ac-1ad60badcf51 acc280053dc4006163027a55256a6cca { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01082.RNA-Seq.chimeric.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 95d7054c-f13a-4ae8-8117-c9f6c2659fa3.rna_seq.chimeric.gdc_realn.bam 274225612 BAM chimeric harmonized CPTAC3 a15ac72b-7dc3-4c04-bdb0-33ec70fa74f2 09ce115ebff584c8f25ec6a29dc78109 { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor' } +C3N-01082.RNA-Seq.genomic.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 e22ff732-755c-4e9b-a67d-4810c55b7586.rna_seq.genomic.gdc_realn.bam 11575972623 BAM genomic harmonized CPTAC3 1fcea42a-bbeb-4aa7-8aa1-2bab1d148373 650374fab7ed327e667a9caeea27b427 { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01082.RNA-Seq.genomic.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 95d7054c-f13a-4ae8-8117-c9f6c2659fa3.rna_seq.genomic.gdc_realn.bam 6985800333 BAM genomic harmonized CPTAC3 977e48d7-a331-4f66-8ef6-72dcea3a516e 9fee51e586f779cf2ee757ec1a085841 { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor' } +C3N-01082.RNA-Seq.R1_L005.A C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L005_R1_001.fastq.gz 5571935814 FASTQ R1_L005 unaligned CPTAC3 2754e1db-72ff-4296-930c-a14dcae963e4 a52baf2db4802302bab2eeb6ea8db1ff { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01082.RNA-Seq.R1_L005.T C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 190201_UNC31-K00269_0189_AH3L7FBBXY_CGATGT_S18_L005_R1_001.fastq.gz 3139277370 FASTQ R1_L005 unaligned CPTAC3 4843ac3c-7ff4-4b51-9c10-796827bd15f5 5714c1195fd016bb516c22bd24fc5884 { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01082.RNA-Seq.R2_L005.A C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTCCGC_S3_L005_R2_001.fastq.gz 6102461447 FASTQ R2_L005 unaligned CPTAC3 57e38ac6-2520-4c34-9158-9ce202821d6d 5e8079213872e5221be63e07dfc11ae1 { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01082.RNA-Seq.R2_L005.T C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 190201_UNC31-K00269_0189_AH3L7FBBXY_CGATGT_S18_L005_R2_001.fastq.gz 3334223376 FASTQ R2_L005 unaligned CPTAC3 3ebde143-6c0a-474e-8d54-cb149cdd5a2e caab69140cf3453d14d5809b4e94d870 { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01082.RNA-Seq.transcriptome.A.hg38 C3N-01082 CCRCC RNA-Seq tissue_normal CPT0211700009 e22ff732-755c-4e9b-a67d-4810c55b7586.rna_seq.transcriptome.gdc_realn.bam 15191498796 BAM transcriptome harmonized CPTAC3 19be275f-b951-4230-ba30-41c0726ce07e b8dfd0f1eacfb725af914f0fabe793fe { 'aliquot_tag': 'ALQ_3835f47d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01082.RNA-Seq.transcriptome.T.hg38 C3N-01082 CCRCC RNA-Seq tumor CPT0211680009 95d7054c-f13a-4ae8-8117-c9f6c2659fa3.rna_seq.transcriptome.gdc_realn.bam 8550318272 BAM transcriptome harmonized CPTAC3 de4ed059-2371-4f8a-bd2f-6f114dd5bf46 2d4abe9e7b11e2f1b4504a556ee7cde0 { 'aliquot_tag': 'ALQ_c3196c19', 'gdc_sample_type': 'Primary Tumor' } C3N-01082.WGS.N C3N-01082 CCRCC WGS blood_normal CPT0211780002 CPT0211780002.WholeGenome.RP-1303.bam 78259968806 BAM aligned CPTAC3 8383f338-dd01-4c0a-bfa8-cb40606dc877 ee456a76e6c8351810f6ce49349e1f7a { 'aliquot_tag': 'ALQ_9f976634', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01082.WGS.N.hg38 C3N-01082 CCRCC WGS blood_normal CPT0211780002 5aa47d8e-1a69-4295-92a2-c4b686860c17_wgs_gdc_realn.bam 114860618076 BAM harmonized CPTAC3 126b4110-04ef-4865-8609-8f0594577538 7e7ede475a89a1ab820d3222c0d7c2d0 { 'aliquot_tag': 'ALQ_9f976634', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01082.WGS.T C3N-01082 CCRCC WGS tumor CPT0211680006 CPT0211680006.WholeGenome.RP-1303.bam 52755891542 BAM aligned CPTAC3 3dadac4e-194b-467d-9853-f17447d1ad1c b9a439197e6e6070539a7442fd126fc1 { 'aliquot_tag': 'ALQ_53a67188', 'gdc_sample_type': 'Primary Tumor' } @@ -24095,16 +25977,16 @@ C3N-01083.miRNA-Seq.A C3N-01083 CCRCC miRNA-Seq tissue_normal CPT0211880009 1902 C3N-01083.miRNA-Seq.A.hg38 C3N-01083 CCRCC miRNA-Seq tissue_normal CPT0211880009 0a5a900b-435e-472c-8cdb-9641243d80ae_mirnaseq_gdc_realn.bam 189129134 BAM harmonized CPTAC3 61210e7b-0102-476a-b348-76d840e2180d 6a11d09551366d6b6cea761c37bcd27b { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01083.miRNA-Seq.T C3N-01083 CCRCC miRNA-Seq tumor CPT0211850009 190206_UNC31-K00269_0191_AH2WY5BBXY_ATTCCT_S24_L001_R1_001.unaln.bam 242398485 BAM unaligned CPTAC3 e743e0ca-610a-4be7-845d-eda12bd9fc00 d41b40f4421e74ba6cc488ff176d67fd { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor' } C3N-01083.miRNA-Seq.T.hg38 C3N-01083 CCRCC miRNA-Seq tumor CPT0211850009 57c9dd9a-30bc-49d8-8ba8-aea243bf6e46_mirnaseq_gdc_realn.bam 266600403 BAM harmonized CPTAC3 f1a1f788-fc1a-4117-9253-b1992a0df8af e14a277cf12a638fe60b77a53043ce17 { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01083.RNA-Seq.chimeric.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 1b4fe785-161f-41ce-8d85-d006b5c071ec.rna_seq.chimeric.gdc_realn.bam 32828638 BAM chimeric harmonized CPTAC3 34d0107d-e6c1-410e-b1e5-3add27870608 9d5987e5689bd6996a639d63de272e5d { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01083.RNA-Seq.chimeric.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 b6081d26-269a-4c6b-bc75-1a5f9d672633.rna_seq.chimeric.gdc_realn.bam 243880557 BAM chimeric harmonized CPTAC3 f7cffe6b-6466-4783-ac3d-8af31b4f49c1 a0541e868926e6c4554a02b2a5350947 { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01083.RNA-Seq.genomic.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 1b4fe785-161f-41ce-8d85-d006b5c071ec.rna_seq.genomic.gdc_realn.bam 7386155592 BAM genomic harmonized CPTAC3 f3d25cc3-7904-4c17-93c4-f904c5a64546 409d9dce3456e2767993d4c5ecab8e9c { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01083.RNA-Seq.genomic.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 b6081d26-269a-4c6b-bc75-1a5f9d672633.rna_seq.genomic.gdc_realn.bam 6458036609 BAM genomic harmonized CPTAC3 8d11239c-3cdd-4cbd-bbd6-fa975d4d5ac2 491fd36fc245252cfadab8f9489a4dea { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01083.RNA-Seq.R1_L005.A C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L005_R1_001.fastq.gz 3459021809 FASTQ R1_L005 unaligned CPTAC3 7dd921a9-9aa7-4f97-8309-c498cc9ea467 21f8a1d72a080c939423e80fbc58219c { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01083.RNA-Seq.R1_L005.T C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 190201_UNC31-K00269_0189_AH3L7FBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 2749665019 FASTQ R1_L005 unaligned CPTAC3 b9bc12dd-b11a-47af-a68b-b3ba1a8b660c a6b7fc5544a50ff97000cccd6f5c01f6 { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01083.RNA-Seq.R2_L005.A C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L005_R2_001.fastq.gz 3403075435 FASTQ R2_L005 unaligned CPTAC3 304830a4-c6dc-480d-9183-eb79fc6a2111 d639563d622c3eacbe0e31e0c66f2fd7 { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01083.RNA-Seq.R2_L005.T C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 190201_UNC31-K00269_0189_AH3L7FBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 2940592823 FASTQ R2_L005 unaligned CPTAC3 1ce0132c-de61-4591-81a6-3eb7f6db53e7 1ad734b8bc95bc41c3dafba8b42602ce { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01083.RNA-Seq.transcriptome.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 1b4fe785-161f-41ce-8d85-d006b5c071ec.rna_seq.transcriptome.gdc_realn.bam 7410188036 BAM transcriptome harmonized CPTAC3 a5fde65e-1902-4300-b706-879a4e3bac81 a18ff1a6c09c9d0bddb9b8b210bcd602 { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01083.RNA-Seq.transcriptome.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 b6081d26-269a-4c6b-bc75-1a5f9d672633.rna_seq.transcriptome.gdc_realn.bam 6777868146 BAM transcriptome harmonized CPTAC3 966261f2-0168-4dba-a945-80581aee87e9 b3a2d30fbf7276e1cce06307e67b16cb { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01083.RNA-Seq.chimeric.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 ae148b9d-d7bc-4091-bb49-a052dd230ae5.rna_seq.chimeric.gdc_realn.bam 32818934 BAM chimeric harmonized CPTAC3 48f0dfd2-23e3-40b5-ad6f-f4579c35e8b0 6b470c7947f42e0f103e8a782b15002b { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01083.RNA-Seq.chimeric.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 7a08d141-814e-4417-92cc-056a77fd0781.rna_seq.chimeric.gdc_realn.bam 243856773 BAM chimeric harmonized CPTAC3 67f0e29b-0cb6-4c63-9eb7-9152edeb5b32 5b6bca480be59518625bf49f11c4ec73 { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01083.RNA-Seq.genomic.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 ae148b9d-d7bc-4091-bb49-a052dd230ae5.rna_seq.genomic.gdc_realn.bam 7387170692 BAM genomic harmonized CPTAC3 99f7cc5a-aa02-434c-9628-1c69fe73b2c3 d382fe7b5c8059d82d849c199ba09c79 { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01083.RNA-Seq.genomic.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 7a08d141-814e-4417-92cc-056a77fd0781.rna_seq.genomic.gdc_realn.bam 6459291032 BAM genomic harmonized CPTAC3 21a8dd1d-8468-47fe-ab0e-14ed4a7550cf 102a058ecea3783f807c861bbfe924cc { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01083.RNA-Seq.R1_L005.A C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L005_R1_001.fastq.gz 3459021809 FASTQ R1_L005 unaligned CPTAC3 7dd921a9-9aa7-4f97-8309-c498cc9ea467 21f8a1d72a080c939423e80fbc58219c { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01083.RNA-Seq.R1_L005.T C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 190201_UNC31-K00269_0189_AH3L7FBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 2749665019 FASTQ R1_L005 unaligned CPTAC3 b9bc12dd-b11a-47af-a68b-b3ba1a8b660c a6b7fc5544a50ff97000cccd6f5c01f6 { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01083.RNA-Seq.R2_L005.A C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGAAA_S2_L005_R2_001.fastq.gz 3403075435 FASTQ R2_L005 unaligned CPTAC3 304830a4-c6dc-480d-9183-eb79fc6a2111 d639563d622c3eacbe0e31e0c66f2fd7 { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01083.RNA-Seq.R2_L005.T C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 190201_UNC31-K00269_0189_AH3L7FBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 2940592823 FASTQ R2_L005 unaligned CPTAC3 1ce0132c-de61-4591-81a6-3eb7f6db53e7 1ad734b8bc95bc41c3dafba8b42602ce { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01083.RNA-Seq.transcriptome.A.hg38 C3N-01083 CCRCC RNA-Seq tissue_normal CPT0211880009 ae148b9d-d7bc-4091-bb49-a052dd230ae5.rna_seq.transcriptome.gdc_realn.bam 8484376806 BAM transcriptome harmonized CPTAC3 4bf91909-d1b4-4a75-9226-5a114bd7045b 32afb8e485265e63c677cfa9ead66d92 { 'aliquot_tag': 'ALQ_f9130d69', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01083.RNA-Seq.transcriptome.T.hg38 C3N-01083 CCRCC RNA-Seq tumor CPT0211850009 7a08d141-814e-4417-92cc-056a77fd0781.rna_seq.transcriptome.gdc_realn.bam 7624292200 BAM transcriptome harmonized CPTAC3 f1dc6799-6a0d-41ad-88f7-32010cb678ad b686a85459d793bf6cda77d27aa36586 { 'aliquot_tag': 'ALQ_183c9d8', 'gdc_sample_type': 'Primary Tumor' } C3N-01083.WGS.N C3N-01083 CCRCC WGS blood_normal CPT0211960002 CPT0211960002.WholeGenome.RP-1303.bam 55433493128 BAM aligned CPTAC3 d5c7e4f6-73a2-47db-bda5-53b3bbac47ea 749789f6104577b7b5d2ab2ca71eb158 { 'aliquot_tag': 'ALQ_1aadb925', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01083.WGS.N.hg38 C3N-01083 CCRCC WGS blood_normal CPT0211960002 61676e90-2ece-4098-9798-07f5a2357b7d_wgs_gdc_realn.bam 80670204882 BAM harmonized CPTAC3 35f4edfd-953d-4f8b-81e6-5c17288d14b1 6dfc38c04a630080e852ad97e8f18dc2 { 'aliquot_tag': 'ALQ_1aadb925', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01083.WGS.T C3N-01083 CCRCC WGS tumor CPT0211850006 CPT0211850006.WholeGenome.RP-1303.bam 57145565058 BAM aligned CPTAC3 5b683651-6bbf-4669-95d3-7fc2079503ec d343597745e0fd153c56dc1f9a2c9063 { 'aliquot_tag': 'ALQ_913cd449', 'gdc_sample_type': 'Primary Tumor' } @@ -24123,16 +26005,16 @@ C3N-01085.miRNA-Seq.A C3N-01085 CCRCC miRNA-Seq tissue_normal CPT0212240009 1902 C3N-01085.miRNA-Seq.A.hg38 C3N-01085 CCRCC miRNA-Seq tissue_normal CPT0212240009 4f146110-d652-40c3-a26f-1b500b70a2ab_mirnaseq_gdc_realn.bam 176491029 BAM harmonized CPTAC3 72d34cc1-0aa7-453e-b4af-0fa6c4bb1134 b1b7cd2aba50595401039aebd7946d73 { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01085.miRNA-Seq.T C3N-01085 CCRCC miRNA-Seq tumor CPT0212210009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAAAAG_S23_L001_R1_001.unaln.bam 227694911 BAM unaligned CPTAC3 13fd13ac-5161-44d9-8b5a-f6f26e7e6a40 dcd5332ccd3e276b360198383b3b0cb9 { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor' } C3N-01085.miRNA-Seq.T.hg38 C3N-01085 CCRCC miRNA-Seq tumor CPT0212210009 c52b5677-535e-4000-a534-58a0a32bd7c7_mirnaseq_gdc_realn.bam 250608573 BAM harmonized CPTAC3 87a729a9-f581-4c5e-a3c0-251ea53710d9 cba3dcc5b532d011d21e785564ff0fe3 { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01085.RNA-Seq.chimeric.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 3e438bf3-4aa5-4a53-9c07-76b4e6213e67.rna_seq.chimeric.gdc_realn.bam 36307844 BAM chimeric harmonized CPTAC3 633ce1b4-3c8e-4b17-888a-fdae33f6377b a4c07749897e76cb9e1c5263ad2fe97b { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01085.RNA-Seq.chimeric.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 149eb903-110c-4703-8c25-34fd2790ed09.rna_seq.chimeric.gdc_realn.bam 285129301 BAM chimeric harmonized CPTAC3 8442dd68-efb1-48f2-8ce6-0a3e8077d6a5 c2be20f80c5559e312ef04f769a31282 { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01085.RNA-Seq.genomic.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 3e438bf3-4aa5-4a53-9c07-76b4e6213e67.rna_seq.genomic.gdc_realn.bam 8760856600 BAM genomic harmonized CPTAC3 de4b600a-fe34-4603-84cb-cf3736a0a7b6 a9358617b8290780148b12ea9cf115d6 { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01085.RNA-Seq.genomic.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 149eb903-110c-4703-8c25-34fd2790ed09.rna_seq.genomic.gdc_realn.bam 6034067222 BAM genomic harmonized CPTAC3 08be3660-456e-4543-bf35-ca9d748c78ef 8cee5b434d37d6bb617183002ae5c293 { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01085.RNA-Seq.R1_L005.A C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L005_R1_001.fastq.gz 3864947344 FASTQ R1_L005 unaligned CPTAC3 1009564e-d748-4f17-9948-d10aa72471ec 66222d6b354e253c4adf20f0b1751bb4 { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01085.RNA-Seq.R1_L005.T C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 190201_UNC31-K00269_0189_AH3L7FBBXY_TGACCA_S20_L005_R1_001.fastq.gz 2683352550 FASTQ R1_L005 unaligned CPTAC3 1b035c9f-01cb-4c83-845a-7e5b6eafebdd 9bfe476acc01062cfda36f03eb933d23 { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01085.RNA-Seq.R2_L005.A C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L005_R2_001.fastq.gz 4137290608 FASTQ R2_L005 unaligned CPTAC3 2adaedce-781e-4a43-ba97-53e645f5634d 4e7f4f83934c5e24afa61c0c658f2e2b { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01085.RNA-Seq.R2_L005.T C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 190201_UNC31-K00269_0189_AH3L7FBBXY_TGACCA_S20_L005_R2_001.fastq.gz 2785346721 FASTQ R2_L005 unaligned CPTAC3 b391a168-fd51-4373-8eea-a3d4500e89ea 5f716a3973746c517678da117577c7c0 { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01085.RNA-Seq.transcriptome.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 3e438bf3-4aa5-4a53-9c07-76b4e6213e67.rna_seq.transcriptome.gdc_realn.bam 7593360714 BAM transcriptome harmonized CPTAC3 eed6584d-8b1e-4cbf-8232-871ff2ac34ae 41f5019f7f9ee63831f6bba13c806c63 { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01085.RNA-Seq.transcriptome.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 149eb903-110c-4703-8c25-34fd2790ed09.rna_seq.transcriptome.gdc_realn.bam 6122053135 BAM transcriptome harmonized CPTAC3 a081592d-9756-435d-bef1-5702f88ee008 139c57bfb7b742675167d93cbae2adbb { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01085.RNA-Seq.chimeric.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 223effc1-82f0-4159-84bf-44f346a96e56.rna_seq.chimeric.gdc_realn.bam 36291074 BAM chimeric harmonized CPTAC3 fa13fa79-d2c1-431f-8c6e-06a07bb0821e 2af2f4bf5abb29a6726581121386a925 { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01085.RNA-Seq.chimeric.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 3b3239b4-ebb8-43fa-9c04-0b655253bbb5.rna_seq.chimeric.gdc_realn.bam 285107022 BAM chimeric harmonized CPTAC3 f08d30c8-e951-4ecf-a59e-d08fc24ee33c 3faebb17446edd0b0af55c19b0bb4a03 { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01085.RNA-Seq.genomic.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 223effc1-82f0-4159-84bf-44f346a96e56.rna_seq.genomic.gdc_realn.bam 8761229049 BAM genomic harmonized CPTAC3 7a566ffb-01be-482b-89b8-62283d6c6478 8f41762ac2d5c467757b3fe1854f6a23 { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01085.RNA-Seq.genomic.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 3b3239b4-ebb8-43fa-9c04-0b655253bbb5.rna_seq.genomic.gdc_realn.bam 6035087191 BAM genomic harmonized CPTAC3 000812b7-592a-4dcd-abd6-17d7f4a37089 71b5797865e63fffa5c4877917ed9ade { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01085.RNA-Seq.R1_L005.A C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L005_R1_001.fastq.gz 3864947344 FASTQ R1_L005 unaligned CPTAC3 1009564e-d748-4f17-9948-d10aa72471ec 66222d6b354e253c4adf20f0b1751bb4 { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01085.RNA-Seq.R1_L005.T C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 190201_UNC31-K00269_0189_AH3L7FBBXY_TGACCA_S20_L005_R1_001.fastq.gz 2683352550 FASTQ R1_L005 unaligned CPTAC3 1b035c9f-01cb-4c83-845a-7e5b6eafebdd 9bfe476acc01062cfda36f03eb933d23 { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01085.RNA-Seq.R2_L005.A C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTGGCC_S1_L005_R2_001.fastq.gz 4137290608 FASTQ R2_L005 unaligned CPTAC3 2adaedce-781e-4a43-ba97-53e645f5634d 4e7f4f83934c5e24afa61c0c658f2e2b { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01085.RNA-Seq.R2_L005.T C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 190201_UNC31-K00269_0189_AH3L7FBBXY_TGACCA_S20_L005_R2_001.fastq.gz 2785346721 FASTQ R2_L005 unaligned CPTAC3 b391a168-fd51-4373-8eea-a3d4500e89ea 5f716a3973746c517678da117577c7c0 { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01085.RNA-Seq.transcriptome.A.hg38 C3N-01085 CCRCC RNA-Seq tissue_normal CPT0212240009 223effc1-82f0-4159-84bf-44f346a96e56.rna_seq.transcriptome.gdc_realn.bam 8660626096 BAM transcriptome harmonized CPTAC3 26b4c92e-28a5-411f-aa13-7cf12136ae43 b039a044c47bd118b66fbccda844e1c5 { 'aliquot_tag': 'ALQ_ac90d993', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01085.RNA-Seq.transcriptome.T.hg38 C3N-01085 CCRCC RNA-Seq tumor CPT0212210009 3b3239b4-ebb8-43fa-9c04-0b655253bbb5.rna_seq.transcriptome.gdc_realn.bam 6921361338 BAM transcriptome harmonized CPTAC3 5a97845e-43e8-4114-b792-3d6d97cba79e fe2302383a5817d7339b7f3b33630033 { 'aliquot_tag': 'ALQ_647056e3', 'gdc_sample_type': 'Primary Tumor' } C3N-01085.WGS.N C3N-01085 CCRCC WGS blood_normal CPT0212320002 CPT0212320002.WholeGenome.RP-1303.bam 88217023350 BAM aligned CPTAC3 43a3ca27-112f-4cd7-83eb-f505c632f9cf 7a7c794450531ca08ba00071c811ade8 { 'aliquot_tag': 'ALQ_7f5e261e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01085.WGS.N.hg38 C3N-01085 CCRCC WGS blood_normal CPT0212320002 8cdd183e-b85b-4469-8c57-d4f836843094_wgs_gdc_realn.bam 127091492849 BAM harmonized CPTAC3 e4c3ec04-3071-4167-9a20-2df72f78f84d 2a9b7106d46ffaddb54b8ebcd5d95cd0 { 'aliquot_tag': 'ALQ_7f5e261e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01085.WGS.T C3N-01085 CCRCC WGS tumor CPT0212210006 CPT0212210006.WholeGenome.RP-1303.bam 58539445716 BAM aligned CPTAC3 7d628f1d-4b30-439d-b947-0358151aaf0e 0cceb995b4e1e9093ecd9496095d4e64 { 'aliquot_tag': 'ALQ_f4cf4b72', 'gdc_sample_type': 'Primary Tumor' } @@ -24151,16 +26033,16 @@ C3N-01086.miRNA-Seq.A C3N-01086 CCRCC miRNA-Seq tissue_normal CPT0212420009 1902 C3N-01086.miRNA-Seq.A.hg38 C3N-01086 CCRCC miRNA-Seq tissue_normal CPT0212420009 896a4df2-ca3d-4ea1-a921-329fb5bf549a_mirnaseq_gdc_realn.bam 236410609 BAM harmonized CPTAC3 bf10260a-451b-4075-a931-69a2353fc3d0 e9eb2a6b42f61306c0dbf68127fa8d1a { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01086.miRNA-Seq.T C3N-01086 CCRCC miRNA-Seq tumor CPT0212410008 190206_UNC31-K00269_0191_AH2WY5BBXY_CATGGC_S17_L001_R1_001.unaln.bam 184611976 BAM unaligned CPTAC3 f60eecbf-b0f1-4570-ae01-45d2021522a3 4cf526edc21e3e38c5875121e7c288ba { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor' } C3N-01086.miRNA-Seq.T.hg38 C3N-01086 CCRCC miRNA-Seq tumor CPT0212410008 cb0b8b80-85c8-4c03-ae89-99da840a8fe2_mirnaseq_gdc_realn.bam 206569427 BAM harmonized CPTAC3 51e488b2-e2d6-4606-bced-06b34be80ee8 922e86f4f413d57fd590dc3aba53c5f7 { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor' } -C3N-01086.RNA-Seq.chimeric.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 64d1b5af-3178-4744-a76f-3a50ec1ec292.rna_seq.chimeric.gdc_realn.bam 30048627 BAM chimeric harmonized CPTAC3 4516f0c5-f9ec-4b19-876c-045d9e2f1baf 743fc7c0da133f3ddfa9f5f9d16ce0e0 { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01086.RNA-Seq.chimeric.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 3453aa40-b120-4708-acf1-e58a591e295c.rna_seq.chimeric.gdc_realn.bam 183169415 BAM chimeric harmonized CPTAC3 2d07fc2a-a0fb-4b08-a3dc-48ce254e6d9f c5e711f98bb355b0ef9be40dc657042b { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor' } -C3N-01086.RNA-Seq.genomic.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 64d1b5af-3178-4744-a76f-3a50ec1ec292.rna_seq.genomic.gdc_realn.bam 7178900103 BAM genomic harmonized CPTAC3 69e58cf0-8f28-41b2-86f1-92939e2f60a4 1a992628e5cec40e714a1edb00441b79 { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01086.RNA-Seq.genomic.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 3453aa40-b120-4708-acf1-e58a591e295c.rna_seq.genomic.gdc_realn.bam 10148417241 BAM genomic harmonized CPTAC3 6111797a-03d4-440c-b834-c903720e887e caeda2323a4bfbd71381128d1150e3be { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor' } -C3N-01086.RNA-Seq.R1_L001.T C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L001_R1_001.fastq.gz 4691581606 FASTQ R1_L001 unaligned CPTAC3 ead9c882-8720-4aa4-8dbb-c89c306b5fc4 02724e38b012ed2f1c7ccc7e79e2c384 { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor' } -C3N-01086.RNA-Seq.R1_L005.A C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L005_R1_001.fastq.gz 3278264030 FASTQ R1_L005 unaligned CPTAC3 5c4d6621-9a86-4233-9327-4c0620995734 987ccc48478a48d40db8dbf5d9eb9758 { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01086.RNA-Seq.R2_L001.T C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L001_R2_001.fastq.gz 5214104365 FASTQ R2_L001 unaligned CPTAC3 545600d9-3d1f-41ad-a42d-f0190e1869ea e7dee640fdda06d006cb8302b5e7e630 { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor' } -C3N-01086.RNA-Seq.R2_L005.A C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L005_R2_001.fastq.gz 3536311156 FASTQ R2_L005 unaligned CPTAC3 1760d6b5-d062-40c6-b9e2-dd8948acb602 9d92331e3baa78c6afcad72b39ba40af { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01086.RNA-Seq.transcriptome.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 64d1b5af-3178-4744-a76f-3a50ec1ec292.rna_seq.transcriptome.gdc_realn.bam 7077293264 BAM transcriptome harmonized CPTAC3 3cb3c9b2-ebb9-453d-9a2f-3b27f6c880ac fc098f95d91b1ce96612d74f8f305108 { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01086.RNA-Seq.transcriptome.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 3453aa40-b120-4708-acf1-e58a591e295c.rna_seq.transcriptome.gdc_realn.bam 10042425702 BAM transcriptome harmonized CPTAC3 421d8923-e80c-45a9-9637-3394d40a3e6e 3a40e90ac1c1753d938da66e1bba4556 { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor' } +C3N-01086.RNA-Seq.chimeric.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 5728cd72-0b80-4462-a5e4-28a60754f1fa.rna_seq.chimeric.gdc_realn.bam 30031390 BAM chimeric harmonized CPTAC3 60cb00b8-0139-470a-a902-8f0317083593 8116c41c76075580d56e031f7519c4b8 { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01086.RNA-Seq.chimeric.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 62214985-6142-4229-818c-f52bc40a17fb.rna_seq.chimeric.gdc_realn.bam 183130078 BAM chimeric harmonized CPTAC3 ce05deb9-d362-48c4-83bd-76fb47931267 59fa34b9948abcc031c3588e2115f5f7 { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor' } +C3N-01086.RNA-Seq.genomic.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 5728cd72-0b80-4462-a5e4-28a60754f1fa.rna_seq.genomic.gdc_realn.bam 7179809396 BAM genomic harmonized CPTAC3 c156e4e3-6d4d-4fa2-ae65-8eac5ed89e0b 9f808d5d065aa65666c5a0fec47d9132 { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01086.RNA-Seq.genomic.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 62214985-6142-4229-818c-f52bc40a17fb.rna_seq.genomic.gdc_realn.bam 10150681237 BAM genomic harmonized CPTAC3 8e03080c-557b-4e2e-9178-232c9d151b77 370c41cea677f7a25bc54b9f4a118c97 { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor' } +C3N-01086.RNA-Seq.R1_L001.T C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L001_R1_001.fastq.gz 4691581606 FASTQ R1_L001 unaligned CPTAC3 ead9c882-8720-4aa4-8dbb-c89c306b5fc4 02724e38b012ed2f1c7ccc7e79e2c384 { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01086.RNA-Seq.R1_L005.A C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L005_R1_001.fastq.gz 3278264030 FASTQ R1_L005 unaligned CPTAC3 5c4d6621-9a86-4233-9327-4c0620995734 987ccc48478a48d40db8dbf5d9eb9758 { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01086.RNA-Seq.R2_L001.T C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 190205_UNC32-K00270_0144_BH3M3NBBXY_TAGCTT_S3_L001_R2_001.fastq.gz 5214104365 FASTQ R2_L001 unaligned CPTAC3 545600d9-3d1f-41ad-a42d-f0190e1869ea e7dee640fdda06d006cb8302b5e7e630 { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01086.RNA-Seq.R2_L005.A C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 190208_UNC32-K00270_0145_AH3VHMBBXY_GTTTCG_S4_L005_R2_001.fastq.gz 3536311156 FASTQ R2_L005 unaligned CPTAC3 1760d6b5-d062-40c6-b9e2-dd8948acb602 9d92331e3baa78c6afcad72b39ba40af { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01086.RNA-Seq.transcriptome.A.hg38 C3N-01086 CCRCC RNA-Seq tissue_normal CPT0212420009 5728cd72-0b80-4462-a5e4-28a60754f1fa.rna_seq.transcriptome.gdc_realn.bam 8087077427 BAM transcriptome harmonized CPTAC3 c97d996e-36b1-42ad-8ebe-55c1e9f4b3d3 4d1fdf0ccfad13c17ac223553ef85147 { 'aliquot_tag': 'ALQ_f589cf2e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01086.RNA-Seq.transcriptome.T.hg38 C3N-01086 CCRCC RNA-Seq tumor CPT0212410008 62214985-6142-4229-818c-f52bc40a17fb.rna_seq.transcriptome.gdc_realn.bam 11382550420 BAM transcriptome harmonized CPTAC3 83c89a5f-74bf-46c6-846f-02a839c11904 1ff163b66e4c3418d847b03e5b3bfdfd { 'aliquot_tag': 'ALQ_c52e8568', 'gdc_sample_type': 'Primary Tumor' } C3N-01086.WGS.N C3N-01086 CCRCC WGS blood_normal CPT0212500002 CPT0212500002.WholeGenome.RP-1303.bam 54964361879 BAM aligned CPTAC3 79dd8e98-7745-4ef5-ad39-22b049d9c269 472450cd68d1bcb209a752d7eecafda6 { 'aliquot_tag': 'ALQ_d3c79663', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01086.WGS.N.hg38 C3N-01086 CCRCC WGS blood_normal CPT0212500002 c681e10a-745d-4cf3-8df2-620991d38e30_wgs_gdc_realn.bam 80918580844 BAM harmonized CPTAC3 fccaa724-9e43-4b29-a796-cc00b5453029 61a5fc4ed7d0fae16b1008c9d44fe199 { 'aliquot_tag': 'ALQ_d3c79663', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01086.WGS.T C3N-01086 CCRCC WGS tumor CPT0212410006 CPT0212410006.WholeGenome.RP-1303.bam 52045941324 BAM aligned CPTAC3 2f8342dd-d0d5-4dfd-afb6-bea9c6f01863 bb913c9533800d47407ce23cfa217d3e { 'aliquot_tag': 'ALQ_2296a86f', 'gdc_sample_type': 'Primary Tumor' } @@ -24179,16 +26061,16 @@ C3N-01088.miRNA-Seq.A C3N-01088 CCRCC miRNA-Seq tissue_normal CPT0212600009 1902 C3N-01088.miRNA-Seq.A.hg38 C3N-01088 CCRCC miRNA-Seq tissue_normal CPT0212600009 613af411-fca7-4a15-8d88-b89e4c86ddcc_mirnaseq_gdc_realn.bam 227677399 BAM harmonized CPTAC3 5eaff31f-acfa-4726-bdff-4d26508ae6da 4d40e20f8154425752e87fe76b17183f { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01088.miRNA-Seq.T C3N-01088 CCRCC miRNA-Seq tumor CPT0212590009 190206_UNC31-K00269_0191_AH2WY5BBXY_CAACTA_S22_L001_R1_001.unaln.bam 204876617 BAM unaligned CPTAC3 2501fa5d-250c-4bb4-9318-f08d639a8217 b330b938b10bf607e62d5f6a775e1362 { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor' } C3N-01088.miRNA-Seq.T.hg38 C3N-01088 CCRCC miRNA-Seq tumor CPT0212590009 82202ca4-ba36-4f26-b2b0-63af398bd4fd_mirnaseq_gdc_realn.bam 225953614 BAM harmonized CPTAC3 e240524b-338a-4c20-81a6-e598c048ced3 3a1a4c7ce9c17789ca29226ae0ad167e { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01088.RNA-Seq.chimeric.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 835932b7-8c06-4a6f-ae5d-975ee5cd8021.rna_seq.chimeric.gdc_realn.bam 45581614 BAM chimeric harmonized CPTAC3 fe2d2577-6192-4c7a-aeb2-1b273d409bd6 d2a388ec1e3993a5eeed7427bf8a7afc { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01088.RNA-Seq.chimeric.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 00a5e9a1-3764-4434-b9ef-d813142eabf9.rna_seq.chimeric.gdc_realn.bam 360650062 BAM chimeric harmonized CPTAC3 6a21ab14-459f-4425-acae-430523ea630a 49da6996c28c2dff686a341f42eef753 { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01088.RNA-Seq.genomic.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 835932b7-8c06-4a6f-ae5d-975ee5cd8021.rna_seq.genomic.gdc_realn.bam 9576303652 BAM genomic harmonized CPTAC3 51367a5a-f50b-4520-b90e-e5c273708784 bf908a9b68ed698ab3db0a327e1ea21c { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01088.RNA-Seq.genomic.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 00a5e9a1-3764-4434-b9ef-d813142eabf9.rna_seq.genomic.gdc_realn.bam 6766503390 BAM genomic harmonized CPTAC3 2749bfba-33bb-4dcc-a9f6-d7698afb9616 f07071a20fd291cf4169aee4d9c491e2 { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01088.RNA-Seq.R1_L006.A C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGTACG_S19_L006_R1_001.fastq.gz 4362840178 FASTQ R1_L006 unaligned CPTAC3 a2db1345-920d-4be9-9023-fbbe878c81f0 410c3d411af0dac7c5e7e9f9b63edba9 { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01088.RNA-Seq.R1_L006.T C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 3077185301 FASTQ R1_L006 unaligned CPTAC3 df9d1763-5eae-4b0f-9643-5ae242104401 46d1fa28f79684a90fa6b4d0fdf441a2 { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01088.RNA-Seq.R2_L006.A C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGTACG_S19_L006_R2_001.fastq.gz 4868455888 FASTQ R2_L006 unaligned CPTAC3 73f8a436-c7c5-4ae4-9d1c-9c365166951b b3a908d217504842720faa76a940d86b { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01088.RNA-Seq.R2_L006.T C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 3359103403 FASTQ R2_L006 unaligned CPTAC3 0b69c9a4-8a12-4af1-9887-f4517691a138 7edc3383d5fe533d9dab24038a22e154 { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01088.RNA-Seq.transcriptome.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 835932b7-8c06-4a6f-ae5d-975ee5cd8021.rna_seq.transcriptome.gdc_realn.bam 10070138295 BAM transcriptome harmonized CPTAC3 ab178834-a3b0-4512-917a-f53b9d101d1a 724b4882c93c680823f693f7c5b18aaa { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01088.RNA-Seq.transcriptome.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 00a5e9a1-3764-4434-b9ef-d813142eabf9.rna_seq.transcriptome.gdc_realn.bam 6683950815 BAM transcriptome harmonized CPTAC3 37ba3ba8-ab6a-4004-99c1-49f3a41573ca 16ba1ea2d579bfa4ce88d7f87fe9d490 { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01088.RNA-Seq.chimeric.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 befa270a-7db0-42de-bf21-1bd9014ec54e.rna_seq.chimeric.gdc_realn.bam 45568023 BAM chimeric harmonized CPTAC3 df775deb-9412-42f9-bade-ba49b20170d9 846a750b8062e6d448ac79fe563cdfd5 { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01088.RNA-Seq.chimeric.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 307840fa-0ce5-4c81-b330-dd1fba7b4e9c.rna_seq.chimeric.gdc_realn.bam 360623498 BAM chimeric harmonized CPTAC3 c69d391d-49b0-4a53-b909-bee135ad2f5d 8f1068958f3614c51deb33ff1f10c62d { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01088.RNA-Seq.genomic.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 befa270a-7db0-42de-bf21-1bd9014ec54e.rna_seq.genomic.gdc_realn.bam 9578137316 BAM genomic harmonized CPTAC3 b72ba7b0-95ec-46f0-839f-e9efe1cb252a 7313cd36fdf859e63b2a591ff905ffac { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01088.RNA-Seq.genomic.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 307840fa-0ce5-4c81-b330-dd1fba7b4e9c.rna_seq.genomic.gdc_realn.bam 6767517474 BAM genomic harmonized CPTAC3 1d18d300-161e-4bbf-bb62-39e819ae1c57 d9a90f8b52ece7d404fd680e44695003 { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01088.RNA-Seq.R1_L006.A C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGTACG_S19_L006_R1_001.fastq.gz 4362840178 FASTQ R1_L006 unaligned CPTAC3 a2db1345-920d-4be9-9023-fbbe878c81f0 410c3d411af0dac7c5e7e9f9b63edba9 { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01088.RNA-Seq.R1_L006.T C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 3077185301 FASTQ R1_L006 unaligned CPTAC3 df9d1763-5eae-4b0f-9643-5ae242104401 46d1fa28f79684a90fa6b4d0fdf441a2 { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01088.RNA-Seq.R2_L006.A C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 190208_UNC32-K00270_0145_AH3VHMBBXY_CGTACG_S19_L006_R2_001.fastq.gz 4868455888 FASTQ R2_L006 unaligned CPTAC3 73f8a436-c7c5-4ae4-9d1c-9c365166951b b3a908d217504842720faa76a940d86b { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01088.RNA-Seq.R2_L006.T C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 190201_UNC31-K00269_0189_AH3L7FBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 3359103403 FASTQ R2_L006 unaligned CPTAC3 0b69c9a4-8a12-4af1-9887-f4517691a138 7edc3383d5fe533d9dab24038a22e154 { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01088.RNA-Seq.transcriptome.A.hg38 C3N-01088 CCRCC RNA-Seq tissue_normal CPT0212600009 befa270a-7db0-42de-bf21-1bd9014ec54e.rna_seq.transcriptome.gdc_realn.bam 11488220780 BAM transcriptome harmonized CPTAC3 dbd3333a-1c64-4fba-8aa6-961007e90b61 57e087e7a8a5a3a5ba2ec07e4ea5964c { 'aliquot_tag': 'ALQ_c2813d45', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01088.RNA-Seq.transcriptome.T.hg38 C3N-01088 CCRCC RNA-Seq tumor CPT0212590009 307840fa-0ce5-4c81-b330-dd1fba7b4e9c.rna_seq.transcriptome.gdc_realn.bam 7604247637 BAM transcriptome harmonized CPTAC3 94efa4c1-00fc-4aeb-b696-05d9aa77418c 7efe079a7e044ee387b59b0e7d6e8ece { 'aliquot_tag': 'ALQ_49052d9a', 'gdc_sample_type': 'Primary Tumor' } C3N-01088.WGS.N C3N-01088 CCRCC WGS blood_normal CPT0212680002 CPT0212680002.WholeGenome.RP-1303.bam 56101950229 BAM aligned CPTAC3 e78aac01-42c7-4a6c-aeb4-608ed776b3a8 1a4e323ad3d18946f1753300b4fc8246 { 'aliquot_tag': 'ALQ_6523af0c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01088.WGS.N.hg38 C3N-01088 CCRCC WGS blood_normal CPT0212680002 48cb13a6-1357-49f8-9eec-d1e813225a06_wgs_gdc_realn.bam 81660921751 BAM harmonized CPTAC3 321eeb12-ed4c-42f6-b208-4d6266888bf8 c1e81ab09e2b8b2221f7a504948b1c57 { 'aliquot_tag': 'ALQ_6523af0c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01088.WGS.T C3N-01088 CCRCC WGS tumor CPT0212590006 CPT0212590006.WholeGenome.RP-1303.bam 67730311406 BAM aligned CPTAC3 a389eb11-e298-44dc-9893-81ec7b4310b2 1100f001912a631d45f7f539f6212e34 { 'aliquot_tag': 'ALQ_d9ba300b', 'gdc_sample_type': 'Primary Tumor' } @@ -24207,16 +26089,16 @@ C3N-01090.miRNA-Seq.A C3N-01090 CCRCC miRNA-Seq tissue_normal CPT0212780009 1902 C3N-01090.miRNA-Seq.A.hg38 C3N-01090 CCRCC miRNA-Seq tissue_normal CPT0212780009 54be5da6-8bf0-4a4e-b975-894783e15886_mirnaseq_gdc_realn.bam 224159387 BAM harmonized CPTAC3 e8b45cd9-4414-4c2b-95f6-166f420a8887 d935c8bf9ff288a02abb996711c5fe84 { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01090.miRNA-Seq.T C3N-01090 CCRCC miRNA-Seq tumor CPT0212770008 190206_UNC31-K00269_0191_AH2WY5BBXY_CATTTT_S16_L001_R1_001.unaln.bam 221569842 BAM unaligned CPTAC3 f7343596-909c-4ef0-829e-f96c6bca564a 499e9079ddcb488773144e137f85f7ee { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor' } C3N-01090.miRNA-Seq.T.hg38 C3N-01090 CCRCC miRNA-Seq tumor CPT0212770008 299573a2-9698-4079-b29c-7b6af661fbb3_mirnaseq_gdc_realn.bam 251207990 BAM harmonized CPTAC3 6f8169e0-de19-4f4b-90ed-dca464173500 339305b2cf369f2dae9d660411adf710 { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor' } -C3N-01090.RNA-Seq.chimeric.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 8f0d46d5-4d8c-43f5-9a23-30a9df55f808.rna_seq.chimeric.gdc_realn.bam 46503377 BAM chimeric harmonized CPTAC3 789308c8-2557-4daa-9cbd-8f10dcf72ebe 30c8f0b63a8807b057e091908d8b057d { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01090.RNA-Seq.chimeric.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 783118b8-ade4-4bce-a029-086f04d547a6.rna_seq.chimeric.gdc_realn.bam 127892723 BAM chimeric harmonized CPTAC3 59744869-b592-407d-a746-e3054346067c 4ba08353e6b891605ae48155ffced4a4 { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor' } -C3N-01090.RNA-Seq.genomic.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 8f0d46d5-4d8c-43f5-9a23-30a9df55f808.rna_seq.genomic.gdc_realn.bam 10292338489 BAM genomic harmonized CPTAC3 259c1109-434b-47ca-8d70-1ec99d7fd4a0 e46c967fe4dad126390e0c35ff7f399e { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01090.RNA-Seq.genomic.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 783118b8-ade4-4bce-a029-086f04d547a6.rna_seq.genomic.gdc_realn.bam 8317295509 BAM genomic harmonized CPTAC3 412d5249-a42e-4688-b7f3-79b82b4c3e17 f2a4a94c0448ca9c01ddb376d5578322 { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor' } -C3N-01090.RNA-Seq.R1_L001.T C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 190320_UNC31-K00269_0200_BH5CF5BBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3631989786 FASTQ R1_L001 unaligned CPTAC3 7e44360b-cc44-40ac-ae12-c22720689822 bd1054992f7134e190808b121290cd55 { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor' } -C3N-01090.RNA-Seq.R1_L006.A C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GAGTGG_S18_L006_R1_001.fastq.gz 4807323085 FASTQ R1_L006 unaligned CPTAC3 80cdb882-6cb5-46f6-9c86-a3b364affdc0 5d87b051ad8014795f5d1d91c33fbbae { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01090.RNA-Seq.R2_L001.T C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 190320_UNC31-K00269_0200_BH5CF5BBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4230805361 FASTQ R2_L001 unaligned CPTAC3 fdb86b39-7ebe-491a-a788-103845da6f4f 9d42ecf9c456d64efbb2dc79e0d73cae { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor' } -C3N-01090.RNA-Seq.R2_L006.A C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GAGTGG_S18_L006_R2_001.fastq.gz 5300466590 FASTQ R2_L006 unaligned CPTAC3 3d92f34b-5ccf-419a-be06-ab39ca23477e f43b6fffd63f4112c23c4e0ef30b906d { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01090.RNA-Seq.transcriptome.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 8f0d46d5-4d8c-43f5-9a23-30a9df55f808.rna_seq.transcriptome.gdc_realn.bam 10549141779 BAM transcriptome harmonized CPTAC3 bcc03703-bf71-4487-bc46-3628e5462693 0082f7302c0cd72768003c8f7fafb45e { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01090.RNA-Seq.transcriptome.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 783118b8-ade4-4bce-a029-086f04d547a6.rna_seq.transcriptome.gdc_realn.bam 8459055721 BAM transcriptome harmonized CPTAC3 59d5065b-09c7-4bd2-bba9-6e1146f9299f e2a51a8e3038be7de2ca3dfacfb82b78 { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor' } +C3N-01090.RNA-Seq.chimeric.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 a75fd43a-0a07-41db-9b1e-c1ecf5fb4b18.rna_seq.chimeric.gdc_realn.bam 46492762 BAM chimeric harmonized CPTAC3 540ffdfe-a8c9-4200-9b86-36c41acc94bd c7fef87e0dd1341de713202c1ac4d146 { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01090.RNA-Seq.chimeric.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 475268eb-120d-4708-9d79-0f6c745afcc4.rna_seq.chimeric.gdc_realn.bam 127856038 BAM chimeric harmonized CPTAC3 8284b05e-f0f8-49d0-a158-9fc56f702d22 da6750832beb45fcf2473724f8c7f896 { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor' } +C3N-01090.RNA-Seq.genomic.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 a75fd43a-0a07-41db-9b1e-c1ecf5fb4b18.rna_seq.genomic.gdc_realn.bam 10293774017 BAM genomic harmonized CPTAC3 f8010824-c532-45e6-9644-964d0fbcabee fdc62512c2ddf93340361ae967b085d1 { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01090.RNA-Seq.genomic.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 475268eb-120d-4708-9d79-0f6c745afcc4.rna_seq.genomic.gdc_realn.bam 8318230189 BAM genomic harmonized CPTAC3 80175803-7d71-401f-886d-aacc931a8cb0 4362508d8e28051c3a0c2779e372ab51 { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor' } +C3N-01090.RNA-Seq.R1_L001.T C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 190320_UNC31-K00269_0200_BH5CF5BBXY_GGCTAC_S1_L001_R1_001.fastq.gz 3631989786 FASTQ R1_L001 unaligned CPTAC3 7e44360b-cc44-40ac-ae12-c22720689822 bd1054992f7134e190808b121290cd55 { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01090.RNA-Seq.R1_L006.A C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GAGTGG_S18_L006_R1_001.fastq.gz 4807323085 FASTQ R1_L006 unaligned CPTAC3 80cdb882-6cb5-46f6-9c86-a3b364affdc0 5d87b051ad8014795f5d1d91c33fbbae { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01090.RNA-Seq.R2_L001.T C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 190320_UNC31-K00269_0200_BH5CF5BBXY_GGCTAC_S1_L001_R2_001.fastq.gz 4230805361 FASTQ R2_L001 unaligned CPTAC3 fdb86b39-7ebe-491a-a788-103845da6f4f 9d42ecf9c456d64efbb2dc79e0d73cae { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01090.RNA-Seq.R2_L006.A C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GAGTGG_S18_L006_R2_001.fastq.gz 5300466590 FASTQ R2_L006 unaligned CPTAC3 3d92f34b-5ccf-419a-be06-ab39ca23477e f43b6fffd63f4112c23c4e0ef30b906d { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01090.RNA-Seq.transcriptome.A.hg38 C3N-01090 CCRCC RNA-Seq tissue_normal CPT0212780009 a75fd43a-0a07-41db-9b1e-c1ecf5fb4b18.rna_seq.transcriptome.gdc_realn.bam 12074918202 BAM transcriptome harmonized CPTAC3 8b4c9504-0632-431c-9a48-e8fa7ec11d70 0f87dbf6fa019cc00752a340c8d4d195 { 'aliquot_tag': 'ALQ_39ada521', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01090.RNA-Seq.transcriptome.T.hg38 C3N-01090 CCRCC RNA-Seq tumor CPT0212770008 475268eb-120d-4708-9d79-0f6c745afcc4.rna_seq.transcriptome.gdc_realn.bam 9604631655 BAM transcriptome harmonized CPTAC3 e5216861-0b3b-41ec-9ae9-3ab2cfa7b144 23dd8a62825bb256ca8775f0d5634872 { 'aliquot_tag': 'ALQ_ccfa0266', 'gdc_sample_type': 'Primary Tumor' } C3N-01090.WGS.A C3N-01090 CCRCC WGS tissue_normal CPT0212780006 CPT0212780006.WholeGenome.RP-1303.bam 61888106874 BAM aligned CPTAC3 5ec7e7bf-5309-4f12-a139-ed5874b807f3 f9de1265774941bf52342bfa284b100e { 'aliquot_tag': 'ALQ_a912b8b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01090.WGS.A.hg38 C3N-01090 CCRCC WGS tissue_normal CPT0212780006 ad7ce0f3-e2d5-475a-ad89-0a828f6c2985_wgs_gdc_realn.bam 91666748893 BAM harmonized CPTAC3 725ce428-0ce4-4995-afde-a75355741bf4 1d1514bb9daed9db0b88e255f8e694cf { 'aliquot_tag': 'ALQ_a912b8b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01090.WGS.N C3N-01090 CCRCC WGS blood_normal CPT0212840002 CPT0212840002.WholeGenome.RP-1303.bam 68301465809 BAM aligned CPTAC3 9dc8e8d8-496c-4b5f-806f-f5cccfc6e998 085863ce9f557c6cd73fbb31752b2ab7 { 'aliquot_tag': 'ALQ_9ad9237d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24237,16 +26119,16 @@ C3N-01091.miRNA-Seq.A C3N-01091 CCRCC miRNA-Seq tissue_normal CPT0212940009 1902 C3N-01091.miRNA-Seq.A.hg38 C3N-01091 CCRCC miRNA-Seq tissue_normal CPT0212940009 1e45ba71-cecb-4c9d-9c84-7659e39e3bf3_mirnaseq_gdc_realn.bam 173359442 BAM harmonized CPTAC3 e3966895-dfc1-4569-877b-99dc41821db0 cd8f76fbe7ce5cbcbc0bf223d76997c6 { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01091.miRNA-Seq.T C3N-01091 CCRCC miRNA-Seq tumor CPT0212920009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACCGG_S21_L001_R1_001.unaln.bam 228438704 BAM unaligned CPTAC3 f46fad03-6d28-497a-b30a-f81946ab86c0 be4a1b7fdd486b36f91868aab7531f75 { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor' } C3N-01091.miRNA-Seq.T.hg38 C3N-01091 CCRCC miRNA-Seq tumor CPT0212920009 0d3e956a-c323-48e6-9370-a20576d85c60_mirnaseq_gdc_realn.bam 248698819 BAM harmonized CPTAC3 8ba64021-6636-435c-bf59-05224b9b5b59 54413e7f71442a22a030888dcb1e06af { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01091.RNA-Seq.chimeric.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 a8478838-b6da-4d4b-9943-ad135f73672d.rna_seq.chimeric.gdc_realn.bam 39870396 BAM chimeric harmonized CPTAC3 877cd523-10cc-4a98-ae0f-237427ff0147 cbb4c49dfbb8ea29d631819daf65f002 { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01091.RNA-Seq.chimeric.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7e4485ab-bded-4117-a656-8f019eb3c30c.rna_seq.chimeric.gdc_realn.bam 308483228 BAM chimeric harmonized CPTAC3 1abad9c7-f233-4317-ba01-6f66d639ae0a 7621de9488c9019c514cbb3142430ef8 { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01091.RNA-Seq.genomic.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 a8478838-b6da-4d4b-9943-ad135f73672d.rna_seq.genomic.gdc_realn.bam 9118332231 BAM genomic harmonized CPTAC3 8a4a3202-339c-46ec-b3a0-fd9a3fd753b2 2341c6ee8322b688471df80222f21850 { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01091.RNA-Seq.genomic.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7e4485ab-bded-4117-a656-8f019eb3c30c.rna_seq.genomic.gdc_realn.bam 6747467457 BAM genomic harmonized CPTAC3 f32cd9c0-ed35-424f-a392-95190edbc8d7 fba631a0ee6e76dc64142667ce6e5c76 { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01091.RNA-Seq.R1_L006.A C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTGAT_S17_L006_R1_001.fastq.gz 3985013357 FASTQ R1_L006 unaligned CPTAC3 e6046b4f-f6fb-4c3e-bc48-24b2ad64399d 6f07e3b0d477c4c429415fc4f4ca5cfd { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01091.RNA-Seq.R1_L006.T C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 190201_UNC31-K00269_0189_AH3L7FBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 2953584806 FASTQ R1_L006 unaligned CPTAC3 abd032a1-3c71-4853-a8bc-ed677c4b9c33 3f9a635801a1930796b50cee3473f226 { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01091.RNA-Seq.R2_L006.A C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTGAT_S17_L006_R2_001.fastq.gz 4299492000 FASTQ R2_L006 unaligned CPTAC3 334710ba-9516-42a2-8cc8-853f9e6105f8 5e79c3f305293069780ad2d373f38111 { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01091.RNA-Seq.R2_L006.T C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 190201_UNC31-K00269_0189_AH3L7FBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 3231197568 FASTQ R2_L006 unaligned CPTAC3 bb4a8318-d8c4-475e-b06e-6f374c990db7 035bca4193a71a39a250c28a77a93c69 { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01091.RNA-Seq.transcriptome.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 a8478838-b6da-4d4b-9943-ad135f73672d.rna_seq.transcriptome.gdc_realn.bam 8285758603 BAM transcriptome harmonized CPTAC3 03fbd4f1-6e22-4670-aad4-9c9c575872c6 feaed9df6b4b4bd929ac65c467b78529 { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01091.RNA-Seq.transcriptome.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7e4485ab-bded-4117-a656-8f019eb3c30c.rna_seq.transcriptome.gdc_realn.bam 7182974568 BAM transcriptome harmonized CPTAC3 3b173842-d133-4f90-a88b-b61c67d74130 2e119cb4217943349212a724910b83a7 { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01091.RNA-Seq.chimeric.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 b651b49f-b827-49bc-99ef-f98951288482.rna_seq.chimeric.gdc_realn.bam 39848740 BAM chimeric harmonized CPTAC3 a0ba317e-1de3-4100-84fb-cc171b08cca8 670fa8227c23566862cc8248c9744854 { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01091.RNA-Seq.chimeric.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7f1a294d-6459-48c0-9fd2-ba44b73074c3.rna_seq.chimeric.gdc_realn.bam 308443078 BAM chimeric harmonized CPTAC3 08d1b366-77bc-4877-a4f2-df33ced7d744 ff5d4c86e8dc7e4722beafdd1542b10e { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01091.RNA-Seq.genomic.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 b651b49f-b827-49bc-99ef-f98951288482.rna_seq.genomic.gdc_realn.bam 9119424393 BAM genomic harmonized CPTAC3 ff216685-8f24-4858-aae8-b802759f49bf eeb656fcbe4bd3518eaa8085ce9b6a41 { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01091.RNA-Seq.genomic.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7f1a294d-6459-48c0-9fd2-ba44b73074c3.rna_seq.genomic.gdc_realn.bam 6748381626 BAM genomic harmonized CPTAC3 29fcc001-473b-4aaf-9716-6bd024321459 3776668f7fd15060eedb9f193bbfcb7f { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01091.RNA-Seq.R1_L006.A C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTGAT_S17_L006_R1_001.fastq.gz 3985013357 FASTQ R1_L006 unaligned CPTAC3 e6046b4f-f6fb-4c3e-bc48-24b2ad64399d 6f07e3b0d477c4c429415fc4f4ca5cfd { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01091.RNA-Seq.R1_L006.T C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 190201_UNC31-K00269_0189_AH3L7FBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 2953584806 FASTQ R1_L006 unaligned CPTAC3 abd032a1-3c71-4853-a8bc-ed677c4b9c33 3f9a635801a1930796b50cee3473f226 { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01091.RNA-Seq.R2_L006.A C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 190208_UNC32-K00270_0145_AH3VHMBBXY_ACTGAT_S17_L006_R2_001.fastq.gz 4299492000 FASTQ R2_L006 unaligned CPTAC3 334710ba-9516-42a2-8cc8-853f9e6105f8 5e79c3f305293069780ad2d373f38111 { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01091.RNA-Seq.R2_L006.T C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 190201_UNC31-K00269_0189_AH3L7FBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 3231197568 FASTQ R2_L006 unaligned CPTAC3 bb4a8318-d8c4-475e-b06e-6f374c990db7 035bca4193a71a39a250c28a77a93c69 { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01091.RNA-Seq.transcriptome.A.hg38 C3N-01091 CCRCC RNA-Seq tissue_normal CPT0212940009 b651b49f-b827-49bc-99ef-f98951288482.rna_seq.transcriptome.gdc_realn.bam 9441615014 BAM transcriptome harmonized CPTAC3 ab0faf2e-88b2-44b1-bf21-c248384ead2a dff2d305f917f581bf498a90452de719 { 'aliquot_tag': 'ALQ_c6572950', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01091.RNA-Seq.transcriptome.T.hg38 C3N-01091 CCRCC RNA-Seq tumor CPT0212920009 7f1a294d-6459-48c0-9fd2-ba44b73074c3.rna_seq.transcriptome.gdc_realn.bam 8099824318 BAM transcriptome harmonized CPTAC3 f07fd04b-add4-41ae-8b61-a3a2389f526c 7017d5f074dd969822ccd2f10b699a04 { 'aliquot_tag': 'ALQ_4917dcf0', 'gdc_sample_type': 'Primary Tumor' } C3N-01091.WGS.A C3N-01091 CCRCC WGS tissue_normal CPT0212940006 CPT0212940006.WholeGenome.RP-1303.bam 66239541263 BAM aligned CPTAC3 3f4fca60-27ce-4f44-ab20-d025a3fdbe9b a2be00a069270be6dd75b8be06b614d6 { 'aliquot_tag': 'ALQ_56e834c1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01091.WGS.A.hg38 C3N-01091 CCRCC WGS tissue_normal CPT0212940006 0182fb2a-3733-4d64-ae56-aa514b46d1c1_wgs_gdc_realn.bam 96611211579 BAM harmonized CPTAC3 91803018-bfb7-494f-8bc4-a50aa8a502bb cc33844e66b285a9b2d6488101fbbdca { 'aliquot_tag': 'ALQ_56e834c1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01091.WGS.N C3N-01091 CCRCC WGS blood_normal CPT0213020002 CPT0213020002.WholeGenome.RP-1303.bam 56062597281 BAM aligned CPTAC3 567480cd-9d3d-4189-afd1-853fd619bd00 f9a6da9db931ae9caaf99e5899cf3e01 { 'aliquot_tag': 'ALQ_5fbd5f04', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24268,9 +26150,9 @@ C3N-01165.ADD_4fd44422.WXS.T.hg38 C3N-01165 PDA WXS tumor CPT0093930010 2272a222 C3N-01165.miRNA-Seq.T C3N-01165 PDA miRNA-Seq tumor CPT0093930007 180828_UNC32-K00270_0112_AHWTLNBBXX_CATGGC_S40_L007_R1_001.unaln.bam 231459983 BAM unaligned CPTAC3 a4bb9742-712a-4628-81e6-e173bf2471d3 8fb811fd4d4e6cd12b42e374385d2573 { 'aliquot_tag': 'ALQ_c8abe0c0', 'gdc_sample_type': 'Primary Tumor' } C3N-01165.miRNA-Seq.T.hg38 C3N-01165 PDA miRNA-Seq tumor CPT0093930007 fde92faa-7c74-4f79-bac9-6be631daf1e1_mirnaseq_gdc_realn.bam 261501289 BAM harmonized CPTAC3 474a0f30-7263-4cb6-9680-de3314ef21f0 43f5fe6f0687cbebc9b2af55b4ae059d { 'aliquot_tag': 'ALQ_c8abe0c0', 'gdc_sample_type': 'Primary Tumor' } C3N-01165.RNA-Seq.chimeric.T.hg38 C3N-01165 PDA RNA-Seq tumor CPT0093930007 a0f1ad3d-964c-4ff7-a0f9-4d5a2bb19388.rna_seq.chimeric.gdc_realn.bam 34053818 BAM chimeric harmonized CPTAC3 4a137d1e-f949-4fe2-b395-2425094ba940 311c8a231b53223e5b71d3e0a766e56e { 'aliquot_tag': 'ALQ_c8abe0c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01165.RNA-Seq.genomic.T.hg38 C3N-01165 PDA RNA-Seq tumor CPT0093930007 a0f1ad3d-964c-4ff7-a0f9-4d5a2bb19388.rna_seq.genomic.gdc_realn.bam 10079730004 BAM genomic harmonized CPTAC3 2da5a254-fbe1-443d-b18c-21cc3295c32a 270e68e9c497edf20d5b44eff8981964 { 'aliquot_tag': 'ALQ_c8abe0c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01165.RNA-Seq.R1_L002.T C3N-01165 PDA RNA-Seq tumor CPT0093930007 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L002_R1_001.fastq.gz 4376687728 FASTQ R1_L002 unaligned CPTAC3 ef9122ed-25a0-4e91-903f-ec3cf56105ee d85916536466327d6813841d35b1a2fe { 'aliquot_tag': 'ALQ_c8abe0c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01165.RNA-Seq.R2_L002.T C3N-01165 PDA RNA-Seq tumor CPT0093930007 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L002_R2_001.fastq.gz 4712899554 FASTQ R2_L002 unaligned CPTAC3 4f12b59a-8a2a-4e1f-96b6-8a72c5a9737d 6ac55326ffd00baf6123813a413bbc54 { 'aliquot_tag': 'ALQ_c8abe0c0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01165.RNA-Seq.genomic.T.hg38 C3N-01165 PDA RNA-Seq tumor CPT0093930007 a0f1ad3d-964c-4ff7-a0f9-4d5a2bb19388.rna_seq.genomic.gdc_realn.bam 10079730004 BAM genomic harmonized CPTAC3 698b47fb-21aa-4307-99fd-c64cad53c6b8 270e68e9c497edf20d5b44eff8981964 { 'aliquot_tag': 'ALQ_c8abe0c0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01165.RNA-Seq.R1_L002.T C3N-01165 PDA RNA-Seq tumor CPT0093930007 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L002_R1_001.fastq.gz 4376687728 FASTQ R1_L002 unaligned CPTAC3 ef9122ed-25a0-4e91-903f-ec3cf56105ee d85916536466327d6813841d35b1a2fe { 'aliquot_tag': 'ALQ_c8abe0c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01165.RNA-Seq.R2_L002.T C3N-01165 PDA RNA-Seq tumor CPT0093930007 171129_UNC32-K00270_0067_BHN2N5BBXX_TAGCTT_S6_L002_R2_001.fastq.gz 4712899554 FASTQ R2_L002 unaligned CPTAC3 4f12b59a-8a2a-4e1f-96b6-8a72c5a9737d 6ac55326ffd00baf6123813a413bbc54 { 'aliquot_tag': 'ALQ_c8abe0c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-01165.RNA-Seq.transcriptome.T.hg38 C3N-01165 PDA RNA-Seq tumor CPT0093930007 a0f1ad3d-964c-4ff7-a0f9-4d5a2bb19388.rna_seq.transcriptome.gdc_realn.bam 11851837713 BAM transcriptome harmonized CPTAC3 10bccbb0-e949-406e-b89b-6051740573f6 cea5e70d3d3f943562a471a4db682bb1 { 'aliquot_tag': 'ALQ_c8abe0c0', 'gdc_sample_type': 'Primary Tumor' } C3N-01165.WGS.N C3N-01165 PDA WGS blood_normal CPT0093970002 CPT0093970002.WholeGenome.RP-1303.bam 56928720368 BAM aligned CPTAC3 92d04e5a-5d89-4d3b-ba8f-220208a003ca 904b23428300ff91381ac4a12e56839d { 'aliquot_tag': 'ALQ_4d41b28f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01165.WGS.N.hg38 C3N-01165 PDA WGS blood_normal CPT0093970002 1e3bbe99-f650-4ccf-ae6c-b3808b778c5e_wgs_gdc_realn.bam 84357331846 BAM harmonized CPTAC3 f38c4d33-0ba9-47bd-be74-6ea2ab3aba11 ca6a4f53b13ec4ab38f88ec9d203e96d { 'aliquot_tag': 'ALQ_4d41b28f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24287,9 +26169,9 @@ C3N-01166.ADD_38047533.WXS.T.hg38 C3N-01166 PDA WXS tumor CPT0093980010 704b9b95 C3N-01166.miRNA-Seq.T C3N-01166 PDA miRNA-Seq tumor CPT0093980007 180828_UNC32-K00270_0112_AHWTLNBBXX_CATTTT_S41_L007_R1_001.unaln.bam 336784270 BAM unaligned CPTAC3 06d02bbf-4870-4568-9259-f3532a60c915 e0dc3915d851051570e53f44b52b2fb7 { 'aliquot_tag': 'ALQ_bf7bd1d1', 'gdc_sample_type': 'Primary Tumor' } C3N-01166.miRNA-Seq.T.hg38 C3N-01166 PDA miRNA-Seq tumor CPT0093980007 76121067-2dd1-422a-8d73-0d105a85f876_mirnaseq_gdc_realn.bam 377267757 BAM harmonized CPTAC3 6d353ee8-6aa0-4d13-a24b-7837c0038efb 6a554dc89af03e0ee963bc184a9852d4 { 'aliquot_tag': 'ALQ_bf7bd1d1', 'gdc_sample_type': 'Primary Tumor' } C3N-01166.RNA-Seq.chimeric.T.hg38 C3N-01166 PDA RNA-Seq tumor CPT0093980007 0ac20066-3954-4a36-8ab3-c62a0c32d988.rna_seq.chimeric.gdc_realn.bam 37575171 BAM chimeric harmonized CPTAC3 7657ccec-ec94-420d-9c4d-ade0475cf0ea 0ee5c96defa4b02ceaff36818525d1f2 { 'aliquot_tag': 'ALQ_bf7bd1d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01166.RNA-Seq.genomic.T.hg38 C3N-01166 PDA RNA-Seq tumor CPT0093980007 0ac20066-3954-4a36-8ab3-c62a0c32d988.rna_seq.genomic.gdc_realn.bam 10666312254 BAM genomic harmonized CPTAC3 57040cbc-c999-48a6-9b55-e682dcbc9f81 b364fc26ef94ef7c6e6edd5ecf389fb0 { 'aliquot_tag': 'ALQ_bf7bd1d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01166.RNA-Seq.R1_L002.T C3N-01166 PDA RNA-Seq tumor CPT0093980007 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L002_R1_001.fastq.gz 4542018014 FASTQ R1_L002 unaligned CPTAC3 70698283-5209-4695-a659-76d7963312e2 40d75781318f62017a8fdaeddafd3113 { 'aliquot_tag': 'ALQ_bf7bd1d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01166.RNA-Seq.R2_L002.T C3N-01166 PDA RNA-Seq tumor CPT0093980007 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L002_R2_001.fastq.gz 5112929460 FASTQ R2_L002 unaligned CPTAC3 ccd8a1b9-df8e-4248-a09b-f60845d23eac a0987cd46d06e817b07a442a77922fac { 'aliquot_tag': 'ALQ_bf7bd1d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01166.RNA-Seq.genomic.T.hg38 C3N-01166 PDA RNA-Seq tumor CPT0093980007 0ac20066-3954-4a36-8ab3-c62a0c32d988.rna_seq.genomic.gdc_realn.bam 10666312254 BAM genomic harmonized CPTAC3 4daa3c63-296a-4c28-931f-d011722e62d5 b364fc26ef94ef7c6e6edd5ecf389fb0 { 'aliquot_tag': 'ALQ_bf7bd1d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01166.RNA-Seq.R1_L002.T C3N-01166 PDA RNA-Seq tumor CPT0093980007 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L002_R1_001.fastq.gz 4542018014 FASTQ R1_L002 unaligned CPTAC3 70698283-5209-4695-a659-76d7963312e2 40d75781318f62017a8fdaeddafd3113 { 'aliquot_tag': 'ALQ_bf7bd1d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01166.RNA-Seq.R2_L002.T C3N-01166 PDA RNA-Seq tumor CPT0093980007 171129_UNC32-K00270_0067_BHN2N5BBXX_GGCTAC_S8_L002_R2_001.fastq.gz 5112929460 FASTQ R2_L002 unaligned CPTAC3 ccd8a1b9-df8e-4248-a09b-f60845d23eac a0987cd46d06e817b07a442a77922fac { 'aliquot_tag': 'ALQ_bf7bd1d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-01166.RNA-Seq.transcriptome.T.hg38 C3N-01166 PDA RNA-Seq tumor CPT0093980007 0ac20066-3954-4a36-8ab3-c62a0c32d988.rna_seq.transcriptome.gdc_realn.bam 11959198044 BAM transcriptome harmonized CPTAC3 b8a6c991-cf4e-4905-8b82-0292c9b8cabb 965759e518ef21649c6d647042002ce5 { 'aliquot_tag': 'ALQ_bf7bd1d1', 'gdc_sample_type': 'Primary Tumor' } C3N-01166.WGS.N C3N-01166 PDA WGS blood_normal CPT0094020002 CPT0094020002.WholeGenome.RP-1303.bam 56277336639 BAM aligned CPTAC3 dfbf4470-dc54-48fd-a456-f4cc7ec5f380 d25146717677ed156183b4927136d42e { 'aliquot_tag': 'ALQ_670952b9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01166.WGS.N.hg38 C3N-01166 PDA WGS blood_normal CPT0094020002 5f0475ea-0fad-44a4-a58b-24fe7c42a5db_wgs_gdc_realn.bam 82827610347 BAM harmonized CPTAC3 d39d185f-cf9e-45b1-9554-23ad6aafbefa 0129d9db39e64780f4282420825e2c29 { 'aliquot_tag': 'ALQ_670952b9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24306,9 +26188,9 @@ C3N-01167.ADD_f6ddabab.WXS.T.hg38 C3N-01167 PDA WXS tumor CPT0087890010 159f535d C3N-01167.miRNA-Seq.T C3N-01167 PDA miRNA-Seq tumor CPT0087890007 181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L008_R1_001.unaln.bam 254119241 BAM unaligned CPTAC3 f5f8d15c-628d-4195-a6f6-26f09564156f 142fd8d5d61246976ecffccd90ef15fb { 'aliquot_tag': 'ALQ_71a20f49', 'gdc_sample_type': 'Primary Tumor' } C3N-01167.miRNA-Seq.T.hg38 C3N-01167 PDA miRNA-Seq tumor CPT0087890007 41130c6f-2b96-4a59-b925-231a2ff55578_mirnaseq_gdc_realn.bam 279684342 BAM harmonized CPTAC3 4cbb6a21-b1d0-4c5c-a31d-2c833a0d586d b2ff3937436431ba9312731d232444ad { 'aliquot_tag': 'ALQ_71a20f49', 'gdc_sample_type': 'Primary Tumor' } C3N-01167.RNA-Seq.chimeric.T.hg38 C3N-01167 PDA RNA-Seq tumor CPT0087890007 65a6f888-dc93-43cd-8b3d-3aa5868976cb.rna_seq.chimeric.gdc_realn.bam 37836818 BAM chimeric harmonized CPTAC3 611ad181-3885-43ef-8330-7b72a8d8696d de939ef02356293e3a0d5169d097fdff { 'aliquot_tag': 'ALQ_71a20f49', 'gdc_sample_type': 'Primary Tumor' } -C3N-01167.RNA-Seq.genomic.T.hg38 C3N-01167 PDA RNA-Seq tumor CPT0087890007 65a6f888-dc93-43cd-8b3d-3aa5868976cb.rna_seq.genomic.gdc_realn.bam 8552523706 BAM genomic harmonized CPTAC3 6a453a4a-0a2c-4327-a629-e4d4c3154490 5d840585444f88db5cb0cdfec3981c0f { 'aliquot_tag': 'ALQ_71a20f49', 'gdc_sample_type': 'Primary Tumor' } -C3N-01167.RNA-Seq.R1_L005.T C3N-01167 PDA RNA-Seq tumor CPT0087890007 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L005_R1_001.fastq.gz 4560010112 FASTQ R1_L005 unaligned CPTAC3 e94a5181-c7d1-401a-a4de-db98f6f1c368 a7de553c932fc4b29f8bee24f4fb4aef { 'aliquot_tag': 'ALQ_71a20f49', 'gdc_sample_type': 'Primary Tumor' } -C3N-01167.RNA-Seq.R2_L005.T C3N-01167 PDA RNA-Seq tumor CPT0087890007 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L005_R2_001.fastq.gz 4817365384 FASTQ R2_L005 unaligned CPTAC3 9f7a6bd7-14ee-42df-9f88-f608fea0a6a4 748abd6b143d4a87d25f9bdee8ad4a1d { 'aliquot_tag': 'ALQ_71a20f49', 'gdc_sample_type': 'Primary Tumor' } +C3N-01167.RNA-Seq.genomic.T.hg38 C3N-01167 PDA RNA-Seq tumor CPT0087890007 65a6f888-dc93-43cd-8b3d-3aa5868976cb.rna_seq.genomic.gdc_realn.bam 8552523706 BAM genomic harmonized CPTAC3 2e35de5f-e2a5-4256-8c73-fda4e4eb0fd7 5d840585444f88db5cb0cdfec3981c0f { 'aliquot_tag': 'ALQ_71a20f49', 'gdc_sample_type': 'Primary Tumor' } +C3N-01167.RNA-Seq.R1_L005.T C3N-01167 PDA RNA-Seq tumor CPT0087890007 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L005_R1_001.fastq.gz 4560010112 FASTQ R1_L005 unaligned CPTAC3 e94a5181-c7d1-401a-a4de-db98f6f1c368 a7de553c932fc4b29f8bee24f4fb4aef { 'aliquot_tag': 'ALQ_71a20f49', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01167.RNA-Seq.R2_L005.T C3N-01167 PDA RNA-Seq tumor CPT0087890007 171011_UNC31-K00269_0086_AHLJLCBBXX_ACTGAT_S4_L005_R2_001.fastq.gz 4817365384 FASTQ R2_L005 unaligned CPTAC3 9f7a6bd7-14ee-42df-9f88-f608fea0a6a4 748abd6b143d4a87d25f9bdee8ad4a1d { 'aliquot_tag': 'ALQ_71a20f49', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-01167.RNA-Seq.transcriptome.T.hg38 C3N-01167 PDA RNA-Seq tumor CPT0087890007 65a6f888-dc93-43cd-8b3d-3aa5868976cb.rna_seq.transcriptome.gdc_realn.bam 13300857011 BAM transcriptome harmonized CPTAC3 60ede535-53be-4463-839f-5b056cff19d4 e37ab489fb676655e1d62cee64cd76ed { 'aliquot_tag': 'ALQ_71a20f49', 'gdc_sample_type': 'Primary Tumor' } C3N-01167.WGS.N C3N-01167 PDA WGS blood_normal CPT0087930002 CPT0087930002.WholeGenome.RP-1303.bam 69761664267 BAM aligned CPTAC3 48b529e9-a947-41b1-8a44-fb8dd09b3acd a02a2cd7d3136612ee9eebe1f41dc84b { 'aliquot_tag': 'ALQ_802430c2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01167.WGS.N.hg38 C3N-01167 PDA WGS blood_normal CPT0087930002 c47a5d49-b24b-412d-824f-21f836a59334_gdc_realn.bam 105720714327 BAM harmonized CPTAC3 b502d545-01f9-4dda-9d83-a66f7813fd85 d5ba1ccb60c54543467f2482671d5319 { 'aliquot_tag': 'ALQ_802430c2', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24325,9 +26207,9 @@ C3N-01168.ADD_cdbba281.WXS.T.hg38 C3N-01168 PDA WXS tumor CPT0094030009 ca8a6fce C3N-01168.miRNA-Seq.T C3N-01168 PDA miRNA-Seq tumor CPT0094030006 180828_UNC32-K00270_0112_AHWTLNBBXX_CCAACA_S42_L007_R1_001.unaln.bam 238879218 BAM unaligned CPTAC3 2135e2ed-9156-44ab-9757-e1644237e949 2b0376a59d7d7091f1e377ffbe377ee8 { 'aliquot_tag': 'ALQ_5d04bf10', 'gdc_sample_type': 'Primary Tumor' } C3N-01168.miRNA-Seq.T.hg38 C3N-01168 PDA miRNA-Seq tumor CPT0094030006 47cbc7a6-d354-483d-a044-5a02bdb74cf4_mirnaseq_gdc_realn.bam 266021926 BAM harmonized CPTAC3 c238c28c-1a51-4f10-9d66-3e7c7e28d9b0 960ffc574b3348391db4ba89365dafb0 { 'aliquot_tag': 'ALQ_5d04bf10', 'gdc_sample_type': 'Primary Tumor' } C3N-01168.RNA-Seq.chimeric.T.hg38 C3N-01168 PDA RNA-Seq tumor CPT0094030006 4a27c74b-3c3f-4ae7-8582-ff580a5edd0b.rna_seq.chimeric.gdc_realn.bam 28366810 BAM chimeric harmonized CPTAC3 017d3e59-b4bd-41dd-b85d-69ea799aea91 29c486b3239697ff08a7ebff9b6c129c { 'aliquot_tag': 'ALQ_5d04bf10', 'gdc_sample_type': 'Primary Tumor' } -C3N-01168.RNA-Seq.genomic.T.hg38 C3N-01168 PDA RNA-Seq tumor CPT0094030006 4a27c74b-3c3f-4ae7-8582-ff580a5edd0b.rna_seq.genomic.gdc_realn.bam 8665657351 BAM genomic harmonized CPTAC3 b1998b06-6644-48ea-a9b3-6764c107107b 2fd8890f9975c26a9f4c4eeb1f24a1e4 { 'aliquot_tag': 'ALQ_5d04bf10', 'gdc_sample_type': 'Primary Tumor' } -C3N-01168.RNA-Seq.R1_L002.T C3N-01168 PDA RNA-Seq tumor CPT0094030006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L002_R1_001.fastq.gz 3919471422 FASTQ R1_L002 unaligned CPTAC3 37b2dbf1-2785-4b4d-b38d-8a84fd9c0a66 f8c93717a1e904ccb3e115ffe0afef2a { 'aliquot_tag': 'ALQ_5d04bf10', 'gdc_sample_type': 'Primary Tumor' } -C3N-01168.RNA-Seq.R2_L002.T C3N-01168 PDA RNA-Seq tumor CPT0094030006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L002_R2_001.fastq.gz 4224130212 FASTQ R2_L002 unaligned CPTAC3 a382af42-66b1-4e2d-a90d-f8548c169d98 2f1d606d07d802333bf3a78ed78836fe { 'aliquot_tag': 'ALQ_5d04bf10', 'gdc_sample_type': 'Primary Tumor' } +C3N-01168.RNA-Seq.genomic.T.hg38 C3N-01168 PDA RNA-Seq tumor CPT0094030006 4a27c74b-3c3f-4ae7-8582-ff580a5edd0b.rna_seq.genomic.gdc_realn.bam 8665657351 BAM genomic harmonized CPTAC3 2c3accf2-001f-49eb-8693-66d73293c95a 2fd8890f9975c26a9f4c4eeb1f24a1e4 { 'aliquot_tag': 'ALQ_5d04bf10', 'gdc_sample_type': 'Primary Tumor' } +C3N-01168.RNA-Seq.R1_L002.T C3N-01168 PDA RNA-Seq tumor CPT0094030006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L002_R1_001.fastq.gz 3919471422 FASTQ R1_L002 unaligned CPTAC3 37b2dbf1-2785-4b4d-b38d-8a84fd9c0a66 f8c93717a1e904ccb3e115ffe0afef2a { 'aliquot_tag': 'ALQ_5d04bf10', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01168.RNA-Seq.R2_L002.T C3N-01168 PDA RNA-Seq tumor CPT0094030006 171129_UNC32-K00270_0067_BHN2N5BBXX_CTTGTA_S7_L002_R2_001.fastq.gz 4224130212 FASTQ R2_L002 unaligned CPTAC3 a382af42-66b1-4e2d-a90d-f8548c169d98 2f1d606d07d802333bf3a78ed78836fe { 'aliquot_tag': 'ALQ_5d04bf10', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-01168.RNA-Seq.transcriptome.T.hg38 C3N-01168 PDA RNA-Seq tumor CPT0094030006 4a27c74b-3c3f-4ae7-8582-ff580a5edd0b.rna_seq.transcriptome.gdc_realn.bam 10802979507 BAM transcriptome harmonized CPTAC3 065bd566-61df-4410-9844-d32748a0b8b2 9af788ca266980a3cb408887c31f6e35 { 'aliquot_tag': 'ALQ_5d04bf10', 'gdc_sample_type': 'Primary Tumor' } C3N-01168.WGS.N C3N-01168 PDA WGS blood_normal CPT0094070002 CPT0094070002.WholeGenome.RP-1303.bam 69357858638 BAM aligned CPTAC3 6f117e25-801c-4d02-8a66-065d3e575ed2 7ffd583136695611d05a6b92d233411e { 'aliquot_tag': 'ALQ_afe9ddc9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01168.WGS.N.hg38 C3N-01168 PDA WGS blood_normal CPT0094070002 d3480ad0-6349-44d9-8329-e0a60e2bf8a8_wgs_gdc_realn.bam 101831517163 BAM harmonized CPTAC3 d10bde0c-495c-4b54-8b2d-a0bef5483ee9 19dce619e920b3233dbc2516559ceae4 { 'aliquot_tag': 'ALQ_afe9ddc9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24343,11 +26225,11 @@ C3N-01169.ADD_daac1a75.WXS.T C3N-01169 PDA WXS tumor CPT0094080010 CPT0094080010 C3N-01169.ADD_daac1a75.WXS.T.hg38 C3N-01169 PDA WXS tumor CPT0094080010 a011807b-3bde-4f2c-a905-84863cb877a3_wxs_gdc_realn.bam 54937541768 BAM harmonized CPTAC3 e97151dd-2971-46dd-9425-a01b0a94d11f 3bd969cc930026f67ccf0a4053b4e1c6 { 'aliquot_tag': 'ADD_daac1a75', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Additional DNA for PDA Deep Sequencing' } C3N-01169.miRNA-Seq.T C3N-01169 PDA miRNA-Seq tumor CPT0094080007 180828_UNC32-K00270_0112_AHWTLNBBXX_CGGAAT_S43_L007_R1_001.unaln.bam 332715692 BAM unaligned CPTAC3 05341272-cc50-4983-9049-6f4f3adab8b3 7585837be3f7397033bc07ed4c9a2ded { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor' } C3N-01169.miRNA-Seq.T.hg38 C3N-01169 PDA miRNA-Seq tumor CPT0094080007 69fa27fe-9baa-4599-9490-8c89ec48dcf3_mirnaseq_gdc_realn.bam 371346861 BAM harmonized CPTAC3 7c3967af-b323-4b32-b260-7d807965857b 75b7685cb199957a2c1ccee67b4131fe { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor' } -C3N-01169.RNA-Seq.chimeric.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 23e43a62-39b6-445c-ae96-871d1ed0981f.rna_seq.chimeric.gdc_realn.bam 33620680 BAM chimeric harmonized CPTAC3 8ef698c5-5eea-4978-a0b7-dabe48c78e32 7a603b846a69bb5889017be2e65db401 { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor' } -C3N-01169.RNA-Seq.genomic.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 23e43a62-39b6-445c-ae96-871d1ed0981f.rna_seq.genomic.gdc_realn.bam 9845556524 BAM genomic harmonized CPTAC3 72fd9b3e-ad2e-401c-8a16-de0c6eefc860 3f4559674f12adc4845d337f116ec677 { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor' } -C3N-01169.RNA-Seq.R1_L001.T C3N-01169 PDA RNA-Seq tumor CPT0094080007 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L001_R1_001.fastq.gz 4336908193 FASTQ R1_L001 unaligned CPTAC3 3df22693-51a4-42aa-b67b-7d2ffccdc2af 07d3b5c75bbe9c1bbf6648c812efe760 { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor' } -C3N-01169.RNA-Seq.R2_L001.T C3N-01169 PDA RNA-Seq tumor CPT0094080007 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L001_R2_001.fastq.gz 4605952804 FASTQ R2_L001 unaligned CPTAC3 768cd08d-2cd7-4826-8f30-43c739f3894d 4d2ad9d6a9d086ae058f62535616c2a2 { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor' } -C3N-01169.RNA-Seq.transcriptome.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 23e43a62-39b6-445c-ae96-871d1ed0981f.rna_seq.transcriptome.gdc_realn.bam 9840276769 BAM transcriptome harmonized CPTAC3 95b4fb78-b262-45a1-915c-b9d16ba30584 70351e48f8c56d4f8140ac7e3b73d582 { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor' } +C3N-01169.RNA-Seq.chimeric.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 c1fd9517-4f6c-4b6b-8bd3-1c72f8573268.rna_seq.chimeric.gdc_realn.bam 33604460 BAM chimeric harmonized CPTAC3 9784e6da-4da4-45ab-b99a-71f3e2158857 a40f5552ed648935122faf647558dda2 { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor' } +C3N-01169.RNA-Seq.genomic.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 c1fd9517-4f6c-4b6b-8bd3-1c72f8573268.rna_seq.genomic.gdc_realn.bam 9847831779 BAM genomic harmonized CPTAC3 ad12f603-a119-4962-9461-2bef8380c450 03138b9c449342ce6800753e50843898 { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor' } +C3N-01169.RNA-Seq.R1_L001.T C3N-01169 PDA RNA-Seq tumor CPT0094080007 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L001_R1_001.fastq.gz 4336908193 FASTQ R1_L001 unaligned CPTAC3 3df22693-51a4-42aa-b67b-7d2ffccdc2af 07d3b5c75bbe9c1bbf6648c812efe760 { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01169.RNA-Seq.R2_L001.T C3N-01169 PDA RNA-Seq tumor CPT0094080007 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTCAA_S3_L001_R2_001.fastq.gz 4605952804 FASTQ R2_L001 unaligned CPTAC3 768cd08d-2cd7-4826-8f30-43c739f3894d 4d2ad9d6a9d086ae058f62535616c2a2 { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01169.RNA-Seq.transcriptome.T.hg38 C3N-01169 PDA RNA-Seq tumor CPT0094080007 c1fd9517-4f6c-4b6b-8bd3-1c72f8573268.rna_seq.transcriptome.gdc_realn.bam 10970232135 BAM transcriptome harmonized CPTAC3 d343273f-7f28-450b-827d-3a91e011737a 3307b05220d5f2257e5ad51016c283ff { 'aliquot_tag': 'ALQ_5dd3be97', 'gdc_sample_type': 'Primary Tumor' } C3N-01169.WGS.N C3N-01169 PDA WGS blood_normal CPT0094120002 CPT0094120002.WholeGenome.RP-1303.bam 64766660666 BAM aligned CPTAC3 35cdbd74-c098-4c94-b1bd-4d3fb014ef3a 42a7f644578cf43b84d6f4c16e309143 { 'aliquot_tag': 'ALQ_ac55811c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01169.WGS.N.hg38 C3N-01169 PDA WGS blood_normal CPT0094120002 6c765351-e5e5-4a8a-8ab6-9f73805f2105_wgs_gdc_realn.bam 94529824896 BAM harmonized CPTAC3 63b1585a-f981-4312-8d8d-4c9f7756afad 726eb433d8668c5f6e023fdc74592e9d { 'aliquot_tag': 'ALQ_ac55811c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01169.WXS.N C3N-01169 PDA WXS blood_normal CPT0094120002 CPT0094120002.WholeExome.RP-1303.bam 31812142414 BAM aligned CPTAC3 1f4efc95-58c3-4022-8abb-3928e239e26e f9a4efbd77c15abe89d5159d48ccbffa { 'aliquot_tag': 'ALQ_ac55811c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24358,13 +26240,16 @@ C3N-01171.MethArray.Green.T C3N-01171 UCEC Methylation Array tumor CPT0095190009 C3N-01171.MethArray.Red.T C3N-01171 UCEC Methylation Array tumor CPT0095190009 202234380017_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 bd99f0f7-fd36-41ff-b4e2-bf27cff64241 a0ee66cf3702fcde7fbeb85adeec4023 { 'aliquot_tag': 'ALQ_ea206231', 'gdc_sample_type': 'Primary Tumor' } C3N-01171.miRNA-Seq.T C3N-01171 UCEC miRNA-Seq tumor CPT0095190006 180828_UNC32-K00270_0112_AHWTLNBBXX_CTAGCT_S44_L007_R1_001.unaln.bam 245716367 BAM unaligned CPTAC3 8a3fd642-db93-40bf-a631-4396681f7316 882e0de7321721737af59b9d2984886c { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor' } C3N-01171.miRNA-Seq.T.hg38 C3N-01171 UCEC miRNA-Seq tumor CPT0095190006 dc19bb6a-479b-4caf-939e-40059bcfacdc_mirnaseq_gdc_realn.bam 279102887 BAM harmonized CPTAC3 74c08b1f-0a62-4a49-a7ba-697ecfb0e84b e14c5f18e07015c2e6f36559ec3cf936 { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01171.RNA-Seq.chimeric.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 8a30affe-de49-4353-b915-00e8b543367a.rna_seq.chimeric.gdc_realn.bam 36412109 BAM chimeric harmonized CPTAC3 55eda27d-62af-4ef1-94df-c1a9f4ff9cd5 e7d8c1a57f3df1072e73140fc0db18a5 { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01171.RNA-Seq.genomic.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 8a30affe-de49-4353-b915-00e8b543367a.rna_seq.genomic.gdc_realn.bam 9221396786 BAM genomic harmonized CPTAC3 7ec9c2df-249c-4cd5-b92a-45aaaa88e46b ebd1389a0b97cb52758d8cb70a10ba7c { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01171.RNA-Seq.R1_L001.T C3N-01171 UCEC RNA-Seq tumor CPT0095190006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L001_R1_001.fastq.gz 4334441749 FASTQ R1_L001 unaligned CPTAC3 46e98647-28dd-4501-970b-7f8cc6d5cdc0 f692538f06952d6545c7e28358954b0a { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01171.RNA-Seq.R1_.T C3N-01171 UCEC RNA-Seq tumor CPT0351030001 20210729_P3_G9_WB7988-Plate3_S81_R1_001.fastq.gz 15438164232 FASTQ R1_ unaligned CPTAC3 0ea16774-4576-4e76-82cc-9ea47d90173d bdd2d4c1f9639e39e1ecdbc97c1b86ab { 'aliquot_tag': 'ALQ_ff7a2c9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01171.RNA-Seq.R2_L001.T C3N-01171 UCEC RNA-Seq tumor CPT0095190006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L001_R2_001.fastq.gz 4609243257 FASTQ R2_L001 unaligned CPTAC3 28a61edc-3fbd-4df6-954d-aa3ef9693d0d bbbf1f2571c737d5f3af3cf72550e2ea { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01171.RNA-Seq.R2_.T C3N-01171 UCEC RNA-Seq tumor CPT0351030001 20210729_P3_G9_WB7988-Plate3_S81_R2_001.fastq.gz 16172707576 FASTQ R2_ unaligned CPTAC3 e294c843-9f7f-4411-8c5b-a5ee671142f1 55d71ef7ee7866dff0562adb8955a816 { 'aliquot_tag': 'ALQ_ff7a2c9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01171.RNA-Seq.transcriptome.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 8a30affe-de49-4353-b915-00e8b543367a.rna_seq.transcriptome.gdc_realn.bam 8066538152 BAM transcriptome harmonized CPTAC3 897aa33c-2913-456d-bfb4-88227b11491d 6d065b6fc24da3a89ced861a3b765915 { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01171.RNA-Seq.chimeric.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 a3f17076-778f-495d-9d8d-bf9a6f020a88.rna_seq.chimeric.gdc_realn.bam 36417577 BAM chimeric harmonized CPTAC3 77e58d43-9d37-41f2-8bb3-a0add571e1f2 fecf16f5eb2bd6868274a809fbe19d2a { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01171.RNA-Seq.chimeric.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0351030001 26a59e17-5f1d-4516-95c2-d274a583babd.rna_seq.chimeric.gdc_realn.bam 474798938 BAM chimeric harmonized CPTAC3 3b2bce24-b57d-497d-b2f3-363a2373ee6c 36928c5cd2db39bdf9cecc7828460b54 { 'aliquot_tag': 'ALQ_ff7a2c9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01171.RNA-Seq.genomic.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 a3f17076-778f-495d-9d8d-bf9a6f020a88.rna_seq.genomic.gdc_realn.bam 9222356661 BAM genomic harmonized CPTAC3 ec0abd96-1527-4060-b13a-ad0cc086c749 737bb23374c0084e96220043281cf521 { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01171.RNA-Seq.genomic.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0351030001 26a59e17-5f1d-4516-95c2-d274a583babd.rna_seq.genomic.gdc_realn.bam 23678612651 BAM genomic harmonized CPTAC3 ff750a67-4c11-4005-9adc-3baca6a2a0e3 ded33a392829cf29d9293467085d3f00 { 'aliquot_tag': 'ALQ_ff7a2c9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01171.RNA-Seq.R1_L001.T C3N-01171 UCEC RNA-Seq tumor CPT0095190006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L001_R1_001.fastq.gz 4334441749 FASTQ R1_L001 unaligned CPTAC3 46e98647-28dd-4501-970b-7f8cc6d5cdc0 f692538f06952d6545c7e28358954b0a { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01171.RNA-Seq.R2_L001.T C3N-01171 UCEC RNA-Seq tumor CPT0095190006 171129_UNC32-K00270_0067_BHN2N5BBXX_AGTTCC_S2_L001_R2_001.fastq.gz 4609243257 FASTQ R2_L001 unaligned CPTAC3 28a61edc-3fbd-4df6-954d-aa3ef9693d0d bbbf1f2571c737d5f3af3cf72550e2ea { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01171.RNA-Seq.T C3N-01171 UCEC RNA-Seq tumor CPT0351030001 20210729_P3_G9_WB7988-Plate3_S81_R1_001.fastq.gz 15438164232 FASTQ unaligned CPTAC3 0ea16774-4576-4e76-82cc-9ea47d90173d bdd2d4c1f9639e39e1ecdbc97c1b86ab +C3N-01171.RNA-Seq.T C3N-01171 UCEC RNA-Seq tumor CPT0351030001 20210729_P3_G9_WB7988-Plate3_S81_R2_001.fastq.gz 16172707576 FASTQ unaligned CPTAC3 e294c843-9f7f-4411-8c5b-a5ee671142f1 55d71ef7ee7866dff0562adb8955a816 +C3N-01171.RNA-Seq.transcriptome.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0095190006 a3f17076-778f-495d-9d8d-bf9a6f020a88.rna_seq.transcriptome.gdc_realn.bam 9209285299 BAM transcriptome harmonized CPTAC3 b34b53f0-589f-495f-91f6-d6b74e2e12d5 6664df182cbc4d12cb141b2424fe147b { 'aliquot_tag': 'ALQ_7a9f7fa0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01171.RNA-Seq.transcriptome.T.hg38 C3N-01171 UCEC RNA-Seq tumor CPT0351030001 26a59e17-5f1d-4516-95c2-d274a583babd.rna_seq.transcriptome.gdc_realn.bam 13929541193 BAM transcriptome harmonized CPTAC3 b6c40268-b440-4942-b201-b166cd41541d 2d2df164d1fc46e999b42d4da4cc700a { 'aliquot_tag': 'ALQ_ff7a2c9e', 'gdc_sample_type': 'Primary Tumor' } C3N-01171.WGS.N C3N-01171 UCEC WGS blood_normal CPT0095220002 CPT0095220002.WholeGenome.RP-1303.bam 59761332004 BAM aligned CPTAC3 dc132e6c-b623-4d4f-afc2-63e600379391 23d36c3ec1fe5e809c7c4c2b6e0fed67 { 'aliquot_tag': 'ALQ_8cb6f806', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01171.WGS.N.hg38 C3N-01171 UCEC WGS blood_normal CPT0095220002 1fa4348c-ccab-4616-8cc2-4a122b2f1d60_wgs_gdc_realn.bam 87176824444 BAM harmonized CPTAC3 e1c57884-38c5-4044-8614-bee9ac875ffd 801f873abbf0a85b45645bd8de216e50 { 'aliquot_tag': 'ALQ_8cb6f806', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01171.WGS.T C3N-01171 UCEC WGS tumor CPT0095190009 CPT0095190009.WholeGenome.RP-1303.bam 67039416584 BAM aligned CPTAC3 dab31bc6-b53f-4789-8551-f55541c4cf3a 4b790889edbc1950caf9812618fab6b6 { 'aliquot_tag': 'ALQ_ea206231', 'gdc_sample_type': 'Primary Tumor' } @@ -24377,11 +26262,11 @@ C3N-01172.MethArray.Green.T C3N-01172 UCEC Methylation Array tumor CPT0095230009 C3N-01172.MethArray.Red.T C3N-01172 UCEC Methylation Array tumor CPT0095230009 202234380017_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 3e50e43f-0a5f-4b94-9989-02d20596c0dd d7708a0796709a4c01ecea5ab992ffaa { 'aliquot_tag': 'ALQ_2604083e', 'gdc_sample_type': 'Primary Tumor' } C3N-01172.miRNA-Seq.T C3N-01172 UCEC miRNA-Seq tumor CPT0095230006 180828_UNC32-K00270_0112_AHWTLNBBXX_CTATAC_S45_L007_R1_001.unaln.bam 212183674 BAM unaligned CPTAC3 52b33b31-8083-4ce2-b787-53606d107c2f cde7d4791549b45d125d3abe0c4c2fbe { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor' } C3N-01172.miRNA-Seq.T.hg38 C3N-01172 UCEC miRNA-Seq tumor CPT0095230006 ce963034-b30d-4fa2-86fe-0e64aa62ae05_mirnaseq_gdc_realn.bam 247786971 BAM harmonized CPTAC3 2f50cbcf-3fe9-40b9-a5a4-064fda4c27ba bff1164738d724dc662296a403ade66d { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor' } -C3N-01172.RNA-Seq.chimeric.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 bcc63d98-c4f7-44f5-ad9f-7a1571e67798.rna_seq.chimeric.gdc_realn.bam 27251300 BAM chimeric harmonized CPTAC3 e4e4ea0d-93f4-4b00-aa81-97b1d3a539b8 dd1d7476d1a109d5ef663e0c9b72f1c8 { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor' } -C3N-01172.RNA-Seq.genomic.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 bcc63d98-c4f7-44f5-ad9f-7a1571e67798.rna_seq.genomic.gdc_realn.bam 6889392354 BAM genomic harmonized CPTAC3 c2571c4f-bb71-40ec-97dc-eedd55b158c3 bb98ed08eaf6233eca917ad06717c160 { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor' } -C3N-01172.RNA-Seq.R1_L001.T C3N-01172 UCEC RNA-Seq tumor CPT0095230006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L001_R1_001.fastq.gz 3421852260 FASTQ R1_L001 unaligned CPTAC3 7a5331d9-0936-4443-bf80-acef02f0cde6 bd203b7f3955752f57776c724c673947 { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor' } -C3N-01172.RNA-Seq.R2_L001.T C3N-01172 UCEC RNA-Seq tumor CPT0095230006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L001_R2_001.fastq.gz 3649082566 FASTQ R2_L001 unaligned CPTAC3 628d2b64-f95c-4bd9-8646-95ed83a138d2 66fb5cc20e6ae45657353bc5c82cf640 { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor' } -C3N-01172.RNA-Seq.transcriptome.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 bcc63d98-c4f7-44f5-ad9f-7a1571e67798.rna_seq.transcriptome.gdc_realn.bam 8178210715 BAM transcriptome harmonized CPTAC3 b6e64212-4288-4ee5-85b6-14d397f49b7e 2808b38a78c5a7b497265dadf8c79f37 { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor' } +C3N-01172.RNA-Seq.chimeric.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 e76d3772-16f4-4054-8196-c2ca3592ff51.rna_seq.chimeric.gdc_realn.bam 27245822 BAM chimeric harmonized CPTAC3 f660e99f-11ef-478e-808d-c1c5540068a8 6898d19b1e3de5cab90c515dddefdbf3 { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor' } +C3N-01172.RNA-Seq.genomic.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 e76d3772-16f4-4054-8196-c2ca3592ff51.rna_seq.genomic.gdc_realn.bam 6890412680 BAM genomic harmonized CPTAC3 8d48262f-6f3e-4fb9-92d5-01d80360fff4 1c24f5cd0ae68bb37502c76e3da185e6 { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor' } +C3N-01172.RNA-Seq.R1_L001.T C3N-01172 UCEC RNA-Seq tumor CPT0095230006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L001_R1_001.fastq.gz 3421852260 FASTQ R1_L001 unaligned CPTAC3 7a5331d9-0936-4443-bf80-acef02f0cde6 bd203b7f3955752f57776c724c673947 { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01172.RNA-Seq.R2_L001.T C3N-01172 UCEC RNA-Seq tumor CPT0095230006 171129_UNC32-K00270_0067_BHN2N5BBXX_ATGTCA_S1_L001_R2_001.fastq.gz 3649082566 FASTQ R2_L001 unaligned CPTAC3 628d2b64-f95c-4bd9-8646-95ed83a138d2 66fb5cc20e6ae45657353bc5c82cf640 { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01172.RNA-Seq.transcriptome.T.hg38 C3N-01172 UCEC RNA-Seq tumor CPT0095230006 e76d3772-16f4-4054-8196-c2ca3592ff51.rna_seq.transcriptome.gdc_realn.bam 9423856217 BAM transcriptome harmonized CPTAC3 67222c07-e003-46e6-b572-3b1a76892457 693273084491654a9912d134b6e37d91 { 'aliquot_tag': 'ALQ_b6bb15af', 'gdc_sample_type': 'Primary Tumor' } C3N-01172.WGS.N C3N-01172 UCEC WGS blood_normal CPT0095270002 CPT0095270002.WholeGenome.RP-1303.bam 58504533471 BAM aligned CPTAC3 4f87086c-d213-4806-a7e5-c5d91528e1f2 51ef7717348fbc32374c3be3c2c51e8b { 'aliquot_tag': 'ALQ_44567776', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01172.WGS.N.hg38 C3N-01172 UCEC WGS blood_normal CPT0095270002 09a88bc6-09d4-4097-b86e-94b2958939e0_wgs_gdc_realn.bam 85850878667 BAM harmonized CPTAC3 b26ae84c-2a46-4bd5-9b0a-9519d8fb5b78 d5256de0a666ea7d11e5c8bc85ff20f2 { 'aliquot_tag': 'ALQ_44567776', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01172.WGS.T C3N-01172 UCEC WGS tumor CPT0095230009 CPT0095230009.WholeGenome.RP-1303.bam 57901515111 BAM aligned CPTAC3 ce70e9fc-ce84-4ed1-b46a-cde1a8768188 8c00b2b7a3180ab4a7e96a38f7e4230e { 'aliquot_tag': 'ALQ_2604083e', 'gdc_sample_type': 'Primary Tumor' } @@ -24401,11 +26286,11 @@ C3N-01175.miRNA-Seq.T.hg38 C3N-01175 CCRCC miRNA-Seq tumor CPT0078660006 eb3ed15 C3N-01175.RNA-Seq.chimeric.A.hg38 C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 7ec39023-9f8b-43d0-85e7-8b125aac72ac.rna_seq.chimeric.gdc_realn.bam 65966657 BAM chimeric harmonized CPTAC3 5904c32e-2d3d-44d7-a2b0-ed4387010f9a c370e7e7d7dec41a602389df99847407 { 'aliquot_tag': 'ALQ_acf7828b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01175.RNA-Seq.chimeric.T.hg38 C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 d4a3bdb3-48c8-4213-a46f-e8e6eadb47b4.rna_seq.chimeric.gdc_realn.bam 119177933 BAM chimeric harmonized CPTAC3 6543c7c4-ba1c-42cf-8c4b-bf2901644aed f92fd4d093c27963b973df0e86d13a59 { 'aliquot_tag': 'ALQ_9197ab3b', 'gdc_sample_type': 'Primary Tumor' } C3N-01175.RNA-Seq.genomic.A.hg38 C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 7ec39023-9f8b-43d0-85e7-8b125aac72ac.rna_seq.genomic.gdc_realn.bam 8368693323 BAM genomic harmonized CPTAC3 3bcd337e-96f3-4f41-a57c-e5a6aecfebd4 becf626f394af0c3f42f8c3119d2c79d { 'aliquot_tag': 'ALQ_acf7828b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01175.RNA-Seq.genomic.T.hg38 C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 d4a3bdb3-48c8-4213-a46f-e8e6eadb47b4.rna_seq.genomic.gdc_realn.bam 7738605307 BAM genomic harmonized CPTAC3 8c4a4f0c-5fdc-40cb-89c5-98990c3d0d37 3c8e6732eb81145c391182b2c1819297 { 'aliquot_tag': 'ALQ_9197ab3b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01175.RNA-Seq.R1_L002.A C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L002_R1_001.fastq.gz 4089472462 FASTQ R1_L002 unaligned CPTAC3 e1b2ac07-f41e-4528-96a5-b5e2ff02db63 377a82d484dc905054e5f53e61057aa3 { 'aliquot_tag': 'ALQ_acf7828b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01175.RNA-Seq.R1_L006.T C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 170830_UNC31-K00269_0078_AHLCVMBBXX_CCGTCC_S19_L006_R1_001.fastq.gz 3809003730 FASTQ R1_L006 unaligned CPTAC3 25595679-20dc-49bd-add0-3c0327def3ae ba378d3dc0222e5aafbf2dc6a8809b45 { 'aliquot_tag': 'ALQ_9197ab3b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01175.RNA-Seq.R2_L002.A C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L002_R2_001.fastq.gz 4476617257 FASTQ R2_L002 unaligned CPTAC3 a66289db-08b0-475a-b7ec-0c456d884a3e 68cee88f90a7d90ac3f8533091e5a40f { 'aliquot_tag': 'ALQ_acf7828b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01175.RNA-Seq.R2_L006.T C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 170830_UNC31-K00269_0078_AHLCVMBBXX_CCGTCC_S19_L006_R2_001.fastq.gz 3996118521 FASTQ R2_L006 unaligned CPTAC3 8524e1fc-ec06-4a66-9a6d-7c407fc2de99 330ce0c0f139a7403239214a6913ae90 { 'aliquot_tag': 'ALQ_9197ab3b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01175.RNA-Seq.genomic.T.hg38 C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 d4a3bdb3-48c8-4213-a46f-e8e6eadb47b4.rna_seq.genomic.gdc_realn.bam 7738605307 BAM genomic harmonized CPTAC3 353ec31f-96f9-46d2-9610-05f42222ba20 3c8e6732eb81145c391182b2c1819297 { 'aliquot_tag': 'ALQ_9197ab3b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01175.RNA-Seq.R1_L002.A C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L002_R1_001.fastq.gz 4089472462 FASTQ R1_L002 unaligned CPTAC3 e1b2ac07-f41e-4528-96a5-b5e2ff02db63 377a82d484dc905054e5f53e61057aa3 { 'aliquot_tag': 'ALQ_acf7828b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-01175.RNA-Seq.R1_L006.T C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 170830_UNC31-K00269_0078_AHLCVMBBXX_CCGTCC_S19_L006_R1_001.fastq.gz 3809003730 FASTQ R1_L006 unaligned CPTAC3 25595679-20dc-49bd-add0-3c0327def3ae ba378d3dc0222e5aafbf2dc6a8809b45 { 'aliquot_tag': 'ALQ_9197ab3b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01175.RNA-Seq.R2_L002.A C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L002_R2_001.fastq.gz 4476617257 FASTQ R2_L002 unaligned CPTAC3 a66289db-08b0-475a-b7ec-0c456d884a3e 68cee88f90a7d90ac3f8533091e5a40f { 'aliquot_tag': 'ALQ_acf7828b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-01175.RNA-Seq.R2_L006.T C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 170830_UNC31-K00269_0078_AHLCVMBBXX_CCGTCC_S19_L006_R2_001.fastq.gz 3996118521 FASTQ R2_L006 unaligned CPTAC3 8524e1fc-ec06-4a66-9a6d-7c407fc2de99 330ce0c0f139a7403239214a6913ae90 { 'aliquot_tag': 'ALQ_9197ab3b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-01175.RNA-Seq.transcriptome.A.hg38 C3N-01175 CCRCC RNA-Seq tissue_normal CPT0078670006 7ec39023-9f8b-43d0-85e7-8b125aac72ac.rna_seq.transcriptome.gdc_realn.bam 10389303362 BAM transcriptome harmonized CPTAC3 34a3b353-c2d1-4f32-9645-8461867363dd 9d3f268c0cb74e645a5565a94913da88 { 'aliquot_tag': 'ALQ_acf7828b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01175.RNA-Seq.transcriptome.T.hg38 C3N-01175 CCRCC RNA-Seq tumor CPT0078660006 d4a3bdb3-48c8-4213-a46f-e8e6eadb47b4.rna_seq.transcriptome.gdc_realn.bam 10580792604 BAM transcriptome harmonized CPTAC3 b1a7a8f2-3ec9-40aa-a806-eb67690739c1 5bf8df6be5edb95ef47c40706468cedb { 'aliquot_tag': 'ALQ_9197ab3b', 'gdc_sample_type': 'Primary Tumor' } C3N-01175.WGS.A C3N-01175 CCRCC WGS tissue_normal CPT0078670009 CPT0078670009.WholeGenome.RP-1303.bam 71890074328 BAM aligned CPTAC3 5c4f4c88-529b-490f-87b3-4ca3808010c3 23d5027d204087f53196d6368382f715 { 'aliquot_tag': 'ALQ_3c489f1a', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -24430,12 +26315,12 @@ C3N-01176.miRNA-Seq.T C3N-01176 CCRCC miRNA-Seq tumor CPT0078930006 181012_UNC32 C3N-01176.miRNA-Seq.T.hg38 C3N-01176 CCRCC miRNA-Seq tumor CPT0078930006 af2bfb03-b4a0-47f3-930a-a780c3dee2f1_mirnaseq_gdc_realn.bam 255549158 BAM harmonized CPTAC3 83ffd0df-f7ef-408b-806f-e93a9fad3f07 37993d13d5029a197653372458c0429f { 'aliquot_tag': 'ALQ_a821969e', 'gdc_sample_type': 'Primary Tumor' } C3N-01176.RNA-Seq.chimeric.A.hg38 C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 10312ff5-cdf3-43be-bf2f-a32280f7052f.rna_seq.chimeric.gdc_realn.bam 60935475 BAM chimeric harmonized CPTAC3 4072df40-ecbd-4801-b4a6-3b0a999ed703 a58133c8e6e54d354a9048a37b193e78 { 'aliquot_tag': 'ALQ_1a014a8e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01176.RNA-Seq.chimeric.T.hg38 C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 088373d4-0ab2-4ccb-9f2b-ca207e4d2776.rna_seq.chimeric.gdc_realn.bam 139817666 BAM chimeric harmonized CPTAC3 11339342-e532-459a-b6fe-2d77067c233d ca97289c8db250fd7622c1240830030b { 'aliquot_tag': 'ALQ_a821969e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01176.RNA-Seq.genomic.A.hg38 C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 10312ff5-cdf3-43be-bf2f-a32280f7052f.rna_seq.genomic.gdc_realn.bam 8387793666 BAM genomic harmonized CPTAC3 e7f9cfd7-65c7-4ee2-baa6-b795ba3cc094 68ce8aa19839b381d88f42e6b8688e73 { 'aliquot_tag': 'ALQ_1a014a8e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01176.RNA-Seq.genomic.T.hg38 C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 088373d4-0ab2-4ccb-9f2b-ca207e4d2776.rna_seq.genomic.gdc_realn.bam 7510984237 BAM genomic harmonized CPTAC3 8d97e50d-e56b-4676-b784-fa5ea70f0fdf b1c74e5a81ce29ea95b1bf2a48b44341 { 'aliquot_tag': 'ALQ_a821969e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01176.RNA-Seq.R1_L001.A C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L001_R1_001.fastq.gz 4154638260 FASTQ R1_L001 unaligned CPTAC3 02980652-6d5a-42ff-82f5-509e4517f1d2 fabf064dbad72807f53337bdc696b53b { 'aliquot_tag': 'ALQ_1a014a8e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01176.RNA-Seq.R1_L003.T C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGTACG_S9_L003_R1_001.fastq.gz 3603313334 FASTQ R1_L003 unaligned CPTAC3 104dca41-ddbb-4219-9649-3fda018a597d 6847ae392fcc546909204111700f10ca { 'aliquot_tag': 'ALQ_a821969e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01176.RNA-Seq.R2_L001.A C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L001_R2_001.fastq.gz 4466704957 FASTQ R2_L001 unaligned CPTAC3 51f1907b-0235-495d-bc06-028c37671ac0 9b92b93c4b975fd831e7af3517078f76 { 'aliquot_tag': 'ALQ_1a014a8e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01176.RNA-Seq.R2_L003.T C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGTACG_S9_L003_R2_001.fastq.gz 3916951902 FASTQ R2_L003 unaligned CPTAC3 5292c1d5-4f8f-42da-92b2-96a4d5699b0e 940264b67d7213271dc542276e35586b { 'aliquot_tag': 'ALQ_a821969e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01176.RNA-Seq.genomic.A.hg38 C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 10312ff5-cdf3-43be-bf2f-a32280f7052f.rna_seq.genomic.gdc_realn.bam 8387793666 BAM genomic harmonized CPTAC3 b4d9b7f6-8377-4b32-b2b6-73542c004ddd 68ce8aa19839b381d88f42e6b8688e73 { 'aliquot_tag': 'ALQ_1a014a8e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01176.RNA-Seq.genomic.T.hg38 C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 088373d4-0ab2-4ccb-9f2b-ca207e4d2776.rna_seq.genomic.gdc_realn.bam 7510984237 BAM genomic harmonized CPTAC3 23152348-8249-4bde-b3f6-71f0081dd975 b1c74e5a81ce29ea95b1bf2a48b44341 { 'aliquot_tag': 'ALQ_a821969e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01176.RNA-Seq.R1_L001.A C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L001_R1_001.fastq.gz 4154638260 FASTQ R1_L001 unaligned CPTAC3 02980652-6d5a-42ff-82f5-509e4517f1d2 fabf064dbad72807f53337bdc696b53b { 'aliquot_tag': 'ALQ_1a014a8e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01176.RNA-Seq.R1_L003.T C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGTACG_S9_L003_R1_001.fastq.gz 3603313334 FASTQ R1_L003 unaligned CPTAC3 104dca41-ddbb-4219-9649-3fda018a597d 6847ae392fcc546909204111700f10ca { 'aliquot_tag': 'ALQ_a821969e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01176.RNA-Seq.R2_L001.A C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L001_R2_001.fastq.gz 4466704957 FASTQ R2_L001 unaligned CPTAC3 51f1907b-0235-495d-bc06-028c37671ac0 9b92b93c4b975fd831e7af3517078f76 { 'aliquot_tag': 'ALQ_1a014a8e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01176.RNA-Seq.R2_L003.T C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 170905_UNC31-K00269_0079_AHLCF7BBXX_CGTACG_S9_L003_R2_001.fastq.gz 3916951902 FASTQ R2_L003 unaligned CPTAC3 5292c1d5-4f8f-42da-92b2-96a4d5699b0e 940264b67d7213271dc542276e35586b { 'aliquot_tag': 'ALQ_a821969e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-01176.RNA-Seq.transcriptome.A.hg38 C3N-01176 CCRCC RNA-Seq tissue_normal CPT0078940006 10312ff5-cdf3-43be-bf2f-a32280f7052f.rna_seq.transcriptome.gdc_realn.bam 10410054640 BAM transcriptome harmonized CPTAC3 4f55ec74-5266-494a-aa83-08cf9f2411a9 0bc76b68363d6a4e29985adceac144cd { 'aliquot_tag': 'ALQ_1a014a8e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01176.RNA-Seq.transcriptome.T.hg38 C3N-01176 CCRCC RNA-Seq tumor CPT0078930006 088373d4-0ab2-4ccb-9f2b-ca207e4d2776.rna_seq.transcriptome.gdc_realn.bam 11179306943 BAM transcriptome harmonized CPTAC3 56d95c06-db16-4c57-a13b-424c97a1a594 841fc3c65da15ccbc3cefe250c12f9d0 { 'aliquot_tag': 'ALQ_a821969e', 'gdc_sample_type': 'Primary Tumor' } C3N-01176.WGS.A C3N-01176 CCRCC WGS tissue_normal CPT0078940009 CPT0078940009.WholeGenome.RP-1303.bam 59940367579 BAM aligned CPTAC3 87bc3fd5-d8b2-4dc7-b135-baa0e677b100 875a892798d63ebab04f51af8eedbc40 { 'aliquot_tag': 'ALQ_8abe571f', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -24454,11 +26339,11 @@ C3N-01177.MethArray.Green.T C3N-01177 CCRCC Methylation Array tumor CPT037985000 C3N-01177.MethArray.Red.T C3N-01177 CCRCC Methylation Array tumor CPT0379850009 205589740003_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 276c29df-f6e4-4989-bf7c-8c7d0c9a8767 e574843d72870240ceccee4d9ffc3bda { 'aliquot_tag': 'ALQ_e3789a7b', 'gdc_sample_type': 'Primary Tumor' } C3N-01177.miRNA-Seq.T C3N-01177 CCRCC miRNA-Seq tumor CPT0379850006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TTAGGC_S48_L003_R1_001.unaln.bam 251928311 BAM unaligned CPTAC3 bccc9803-19f9-448b-8dfb-cd9ea52005fb 12d7420d633067b61dcddf567a39c5f6 { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor' } C3N-01177.miRNA-Seq.T.hg38 C3N-01177 CCRCC miRNA-Seq tumor CPT0379850006 23f42110-a539-4bc8-8d99-b5ea46cb3860_mirnaseq_gdc_realn.bam 268818486 BAM harmonized CPTAC3 4e2cf486-a179-41aa-b371-61e1e57cb0ef baac244e615e29f3c27f799deab8001d { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01177.RNA-Seq.chimeric.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 43a921b9-94e5-4ca8-bf34-8b2631dc6bfd.rna_seq.chimeric.gdc_realn.bam 75579264 BAM chimeric harmonized CPTAC3 e6bd8331-b276-4ece-92e8-218aafbb03c7 98f1baf8c526e87bb7856eb83aa68975 { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01177.RNA-Seq.genomic.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 43a921b9-94e5-4ca8-bf34-8b2631dc6bfd.rna_seq.genomic.gdc_realn.bam 5850375618 BAM genomic harmonized CPTAC3 5c0a7421-f820-4984-9d2e-6746d6b62106 23089d827bede566cd9a59477f11c48b { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01177.RNA-Seq.R1_L008.T C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGACTTGG-CGCAGACG_S31_L008_R1_001.fastq.gz 2547271701 FASTQ R1_L008 unaligned CPTAC3 0ddc43d9-99dd-4576-9881-940ebc92064f b1b8afaada9acc56031640de77ce6e77 { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01177.RNA-Seq.R2_L008.T C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGACTTGG-CGCAGACG_S31_L008_R2_001.fastq.gz 2999470180 FASTQ R2_L008 unaligned CPTAC3 4160103f-b91c-46e3-a8fc-427a3c98e757 c3c015f029aed35fbd8aeb9bf6c19f2c { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01177.RNA-Seq.transcriptome.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 43a921b9-94e5-4ca8-bf34-8b2631dc6bfd.rna_seq.transcriptome.gdc_realn.bam 6405360878 BAM transcriptome harmonized CPTAC3 8d3ce411-6c06-40d4-a957-c0d7fe48696a d3ea5b7405ff6bdb2f8c6a4f6e2cbb42 { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor' } +C3N-01177.RNA-Seq.chimeric.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 97db30de-f209-4366-abe7-cf0899e38824.rna_seq.chimeric.gdc_realn.bam 75564924 BAM chimeric harmonized CPTAC3 780804d9-111f-4608-9d74-8b8acaf47896 7e868cefb0f615103229738517da8b31 { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor' } +C3N-01177.RNA-Seq.genomic.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 97db30de-f209-4366-abe7-cf0899e38824.rna_seq.genomic.gdc_realn.bam 5857513613 BAM genomic harmonized CPTAC3 968b9e02-8417-40ee-981d-7c449112c4ea c12e13e43d0dec813982ea535cf141a1 { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor' } +C3N-01177.RNA-Seq.R1_L008.T C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGACTTGG-CGCAGACG_S31_L008_R1_001.fastq.gz 2547271701 FASTQ R1_L008 unaligned CPTAC3 0ddc43d9-99dd-4576-9881-940ebc92064f b1b8afaada9acc56031640de77ce6e77 { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01177.RNA-Seq.R2_L008.T C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGACTTGG-CGCAGACG_S31_L008_R2_001.fastq.gz 2999470180 FASTQ R2_L008 unaligned CPTAC3 4160103f-b91c-46e3-a8fc-427a3c98e757 c3c015f029aed35fbd8aeb9bf6c19f2c { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01177.RNA-Seq.transcriptome.T.hg38 C3N-01177 CCRCC RNA-Seq tumor CPT0379850006 97db30de-f209-4366-abe7-cf0899e38824.rna_seq.transcriptome.gdc_realn.bam 7351464077 BAM transcriptome harmonized CPTAC3 59ebecac-85d2-4f87-8418-8c30c0cb47f8 94f758f8e33f2382ee601dc85109534d { 'aliquot_tag': 'ALQ_73c787ea', 'gdc_sample_type': 'Primary Tumor' } C3N-01177.WGS.N C3N-01177 CCRCC WGS blood_normal CPT0379960002 CPT0379960002.WholeGenome.RP-2158.bam 22754962129 BAM aligned CPTAC3 96d24a1b-1305-49db-8945-5198289b5a54 37f3a654d75eddc4013e89fee1054784 { 'aliquot_tag': 'ALQ_f856ea86', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01177.WGS.N.hg38 C3N-01177 CCRCC WGS blood_normal CPT0379960002 44936cfc-62ca-45f5-9cb8-d585102b97d9_wgs_gdc_realn.bam 67906285932 BAM harmonized CPTAC3 89cf8de8-a316-49c7-b553-d3110c2ed2a8 3a798afee54c1ed0b94a1222c5fbf685 { 'aliquot_tag': 'ALQ_f856ea86', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01177.WGS.T C3N-01177 CCRCC WGS tumor CPT0379850009 CPT0379850009.WholeGenome.RP-2158.bam 20109164895 BAM aligned CPTAC3 b7fee13d-3ee2-4e19-ab9c-3e1049641400 b9864f30c2263bb326fdd2a2bd498d89 { 'aliquot_tag': 'ALQ_e3789a7b', 'gdc_sample_type': 'Primary Tumor' } @@ -24478,11 +26363,11 @@ C3N-01178.miRNA-Seq.T.hg38 C3N-01178 CCRCC miRNA-Seq tumor CPT0078990006 9ea506a C3N-01178.RNA-Seq.chimeric.A.hg38 C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 3a38b6f1-d10e-4dfd-bd0e-529feaf4a92d.rna_seq.chimeric.gdc_realn.bam 34870212 BAM chimeric harmonized CPTAC3 f733d565-9c65-437d-bbac-c757432a571c bb80da870adeeb8ff3c57f68f6628b62 { 'aliquot_tag': 'ALQ_6ef9b632', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01178.RNA-Seq.chimeric.T.hg38 C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 d173182c-b462-476a-b1ce-eb208539c4b0.rna_seq.chimeric.gdc_realn.bam 135880560 BAM chimeric harmonized CPTAC3 09c157a8-bc13-4235-b041-bf108b251bce 25ada8b8575516f68cb34c66edd2b592 { 'aliquot_tag': 'ALQ_e2918e3f', 'gdc_sample_type': 'Primary Tumor' } C3N-01178.RNA-Seq.genomic.A.hg38 C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 3a38b6f1-d10e-4dfd-bd0e-529feaf4a92d.rna_seq.genomic.gdc_realn.bam 7893138898 BAM genomic harmonized CPTAC3 6daab5fc-082c-4426-b89b-decd58a0e265 ad05085c29126c4b272511e4d097d644 { 'aliquot_tag': 'ALQ_6ef9b632', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01178.RNA-Seq.genomic.T.hg38 C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 d173182c-b462-476a-b1ce-eb208539c4b0.rna_seq.genomic.gdc_realn.bam 7510618070 BAM genomic harmonized CPTAC3 bf0686bb-a1ad-4815-ad69-f3183a98fa45 06c8e77842cf28c37ff7534b68c6607f { 'aliquot_tag': 'ALQ_e2918e3f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01178.RNA-Seq.R1_L001.A C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L001_R1_001.fastq.gz 4120851057 FASTQ R1_L001 unaligned CPTAC3 01cd24dc-7356-4f0d-baca-aa8aea70f070 fae4a5eef4d019c1648e8b9e9d98a73d { 'aliquot_tag': 'ALQ_6ef9b632', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01178.RNA-Seq.R1_L003.T C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 170905_UNC31-K00269_0079_AHLCF7BBXX_GAGTGG_S11_L003_R1_001.fastq.gz 3553629147 FASTQ R1_L003 unaligned CPTAC3 19f6c4c3-c727-4e0c-b117-36485f2e8ad3 b5432c951f3a71b76891148c9212a328 { 'aliquot_tag': 'ALQ_e2918e3f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01178.RNA-Seq.R2_L001.A C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L001_R2_001.fastq.gz 3789044481 FASTQ R2_L001 unaligned CPTAC3 aa50587f-fd93-45c5-9dbf-0c84e6fa1105 e8cc41ee47f256fafe3df55bce75eb5c { 'aliquot_tag': 'ALQ_6ef9b632', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01178.RNA-Seq.R2_L003.T C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 170905_UNC31-K00269_0079_AHLCF7BBXX_GAGTGG_S11_L003_R2_001.fastq.gz 3895588213 FASTQ R2_L003 unaligned CPTAC3 19d1dba9-e1aa-4b52-ae10-f5971ea2474a 7d9d4e80e2fb5ffd552e9537355e756b { 'aliquot_tag': 'ALQ_e2918e3f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01178.RNA-Seq.genomic.T.hg38 C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 d173182c-b462-476a-b1ce-eb208539c4b0.rna_seq.genomic.gdc_realn.bam 7510618070 BAM genomic harmonized CPTAC3 2dc1ed5e-1cb3-4774-a6a4-387c89853582 06c8e77842cf28c37ff7534b68c6607f { 'aliquot_tag': 'ALQ_e2918e3f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01178.RNA-Seq.R1_L001.A C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L001_R1_001.fastq.gz 4120851057 FASTQ R1_L001 unaligned CPTAC3 01cd24dc-7356-4f0d-baca-aa8aea70f070 fae4a5eef4d019c1648e8b9e9d98a73d { 'aliquot_tag': 'ALQ_6ef9b632', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01178.RNA-Seq.R1_L003.T C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 170905_UNC31-K00269_0079_AHLCF7BBXX_GAGTGG_S11_L003_R1_001.fastq.gz 3553629147 FASTQ R1_L003 unaligned CPTAC3 19f6c4c3-c727-4e0c-b117-36485f2e8ad3 b5432c951f3a71b76891148c9212a328 { 'aliquot_tag': 'ALQ_e2918e3f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01178.RNA-Seq.R2_L001.A C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L001_R2_001.fastq.gz 3789044481 FASTQ R2_L001 unaligned CPTAC3 aa50587f-fd93-45c5-9dbf-0c84e6fa1105 e8cc41ee47f256fafe3df55bce75eb5c { 'aliquot_tag': 'ALQ_6ef9b632', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01178.RNA-Seq.R2_L003.T C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 170905_UNC31-K00269_0079_AHLCF7BBXX_GAGTGG_S11_L003_R2_001.fastq.gz 3895588213 FASTQ R2_L003 unaligned CPTAC3 19d1dba9-e1aa-4b52-ae10-f5971ea2474a 7d9d4e80e2fb5ffd552e9537355e756b { 'aliquot_tag': 'ALQ_e2918e3f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-01178.RNA-Seq.transcriptome.A.hg38 C3N-01178 CCRCC RNA-Seq tissue_normal CPT0079000006 3a38b6f1-d10e-4dfd-bd0e-529feaf4a92d.rna_seq.transcriptome.gdc_realn.bam 8818970873 BAM transcriptome harmonized CPTAC3 2d2d2607-06da-47e5-a70c-ddcf4f9ba1ba 8a049949c181761970f4c22e0838ee95 { 'aliquot_tag': 'ALQ_6ef9b632', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01178.RNA-Seq.transcriptome.T.hg38 C3N-01178 CCRCC RNA-Seq tumor CPT0078990006 d173182c-b462-476a-b1ce-eb208539c4b0.rna_seq.transcriptome.gdc_realn.bam 10930322424 BAM transcriptome harmonized CPTAC3 bed998c8-4ddc-4b40-a93e-1907d153482f 93239a3f5ea952b2f67439bd26bb7c16 { 'aliquot_tag': 'ALQ_e2918e3f', 'gdc_sample_type': 'Primary Tumor' } C3N-01178.WGS.A C3N-01178 CCRCC WGS tissue_normal CPT0079000009 CPT0079000009.WholeGenome.RP-1303.bam 60180975440 BAM aligned CPTAC3 134c6ce4-4875-4355-8279-0fe54a7d83d1 8d4ef9fbda85ec971d94c173e898b54a { 'aliquot_tag': 'ALQ_fe46aba3', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -24509,10 +26394,10 @@ C3N-01179.RNA-Seq.chimeric.A.hg38 C3N-01179 CCRCC RNA-Seq tissue_normal CPT00889 C3N-01179.RNA-Seq.chimeric.T.hg38 C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 f093ea86-510e-403e-8568-d0486f5ec824.rna_seq.chimeric.gdc_realn.bam 51505894 BAM chimeric harmonized CPTAC3 cd321c81-6cae-4c40-8911-fe4873dc6f84 c2b8f46b6e1b54d2156c1a35b162766a { 'aliquot_tag': 'ALQ_36a1fee2', 'gdc_sample_type': 'Primary Tumor' } C3N-01179.RNA-Seq.genomic.A.hg38 C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 00167e25-7f06-44d8-be51-bd022bf36a4d.rna_seq.genomic.gdc_realn.bam 5166094162 BAM genomic harmonized CPTAC3 2057cf8a-36f6-48f1-940a-c01900487834 2a4f2e982a63c6b860b8f8f850f04d01 { 'aliquot_tag': 'ALQ_4c61ad82', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01179.RNA-Seq.genomic.T.hg38 C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 f093ea86-510e-403e-8568-d0486f5ec824.rna_seq.genomic.gdc_realn.bam 8917317934 BAM genomic harmonized CPTAC3 beb88f5c-50d2-4aae-b42c-4f500bb8602b 03f6a06069d969e074a2c96d48045194 { 'aliquot_tag': 'ALQ_36a1fee2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01179.RNA-Seq.R1_L004.T C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 170908_UNC31-K00269_0080_BHLJ52BBXX_GAGTGG_S14_L004_R1_001.fastq.gz 4322063086 FASTQ R1_L004 unaligned CPTAC3 f823c35f-49f6-4b4e-924f-1301c97cf2e0 d7a48096e9a33177db684adcd40b8750 { 'aliquot_tag': 'ALQ_36a1fee2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01179.RNA-Seq.R1_L007.A C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L007_R1_001.fastq.gz 2465773322 FASTQ R1_L007 unaligned CPTAC3 308882f2-bdc0-49ee-85b1-8522f3e4c35e c5f2418369b2f143836ac0c70204c46a { 'aliquot_tag': 'ALQ_4c61ad82', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01179.RNA-Seq.R2_L004.T C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 170908_UNC31-K00269_0080_BHLJ52BBXX_GAGTGG_S14_L004_R2_001.fastq.gz 4664159822 FASTQ R2_L004 unaligned CPTAC3 4ac98ccb-09db-4275-b6d1-040d73f9f344 e9c63fbbf8a46e76969dc6e428014a04 { 'aliquot_tag': 'ALQ_36a1fee2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01179.RNA-Seq.R2_L007.A C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L007_R2_001.fastq.gz 2587644125 FASTQ R2_L007 unaligned CPTAC3 a7695af2-66a2-40dd-adb9-91a33772e7ae 78ec8e717cb44e92b25182c1ee73f086 { 'aliquot_tag': 'ALQ_4c61ad82', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01179.RNA-Seq.R1_L004.T C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 170908_UNC31-K00269_0080_BHLJ52BBXX_GAGTGG_S14_L004_R1_001.fastq.gz 4322063086 FASTQ R1_L004 unaligned CPTAC3 f823c35f-49f6-4b4e-924f-1301c97cf2e0 d7a48096e9a33177db684adcd40b8750 { 'aliquot_tag': 'ALQ_36a1fee2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01179.RNA-Seq.R1_L007.A C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L007_R1_001.fastq.gz 2465773322 FASTQ R1_L007 unaligned CPTAC3 308882f2-bdc0-49ee-85b1-8522f3e4c35e c5f2418369b2f143836ac0c70204c46a { 'aliquot_tag': 'ALQ_4c61ad82', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01179.RNA-Seq.R2_L004.T C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 170908_UNC31-K00269_0080_BHLJ52BBXX_GAGTGG_S14_L004_R2_001.fastq.gz 4664159822 FASTQ R2_L004 unaligned CPTAC3 4ac98ccb-09db-4275-b6d1-040d73f9f344 e9c63fbbf8a46e76969dc6e428014a04 { 'aliquot_tag': 'ALQ_36a1fee2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01179.RNA-Seq.R2_L007.A C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L007_R2_001.fastq.gz 2587644125 FASTQ R2_L007 unaligned CPTAC3 a7695af2-66a2-40dd-adb9-91a33772e7ae 78ec8e717cb44e92b25182c1ee73f086 { 'aliquot_tag': 'ALQ_4c61ad82', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-01179.RNA-Seq.transcriptome.A.hg38 C3N-01179 CCRCC RNA-Seq tissue_normal CPT0088920006 00167e25-7f06-44d8-be51-bd022bf36a4d.rna_seq.transcriptome.gdc_realn.bam 5933277621 BAM transcriptome harmonized CPTAC3 7d8b0bc3-d272-4814-bb78-d116fe262154 4d65cb8e87d956aa0ee8234c545bd765 { 'aliquot_tag': 'ALQ_4c61ad82', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01179.RNA-Seq.transcriptome.T.hg38 C3N-01179 CCRCC RNA-Seq tumor CPT0088900006 f093ea86-510e-403e-8568-d0486f5ec824.rna_seq.transcriptome.gdc_realn.bam 11244198338 BAM transcriptome harmonized CPTAC3 8247bc15-7a15-425f-b1fa-974b2c185539 2a4f4a7894147176ca7560ec0f571de6 { 'aliquot_tag': 'ALQ_36a1fee2', 'gdc_sample_type': 'Primary Tumor' } C3N-01179.WGS.A C3N-01179 CCRCC WGS tissue_normal CPT0088920009 CPT0088920009.WholeGenome.RP-1303.bam 54025334955 BAM aligned CPTAC3 8c2ebd62-e915-49de-b72f-9ffe2022a344 19be4fb4fed88a1a5b251652d589aa30 { 'aliquot_tag': 'ALQ_dcdeb013', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -24533,8 +26418,8 @@ C3N-01180.miRNA-Seq.T C3N-01180 CCRCC miRNA-Seq tumor CPT0088970006 181012_UNC32 C3N-01180.miRNA-Seq.T.hg38 C3N-01180 CCRCC miRNA-Seq tumor CPT0088970006 fce09e16-89f4-438b-9d9f-fe04a3cfbf0a_mirnaseq_gdc_realn.bam 176004214 BAM harmonized CPTAC3 38ba633f-f15f-48a1-a6ed-c36bfe997591 00cef29ad32601183d14d2e4500cc538 { 'aliquot_tag': 'ALQ_848122f2', 'gdc_sample_type': 'Primary Tumor' } C3N-01180.RNA-Seq.chimeric.T.hg38 C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 1332bf19-4e07-4cdf-abc7-5359ba62a54d.rna_seq.chimeric.gdc_realn.bam 40577493 BAM chimeric harmonized CPTAC3 c136ff4e-ff22-4ee6-8067-73c0e22a66b8 270b440caa39f39b79bee81ff4d7907c { 'aliquot_tag': 'ALQ_848122f2', 'gdc_sample_type': 'Primary Tumor' } C3N-01180.RNA-Seq.genomic.T.hg38 C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 1332bf19-4e07-4cdf-abc7-5359ba62a54d.rna_seq.genomic.gdc_realn.bam 7307407565 BAM genomic harmonized CPTAC3 f86980df-3131-4a52-8166-a824c08b2527 a22c9b51ddba4a427f3ed5be320b0430 { 'aliquot_tag': 'ALQ_848122f2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01180.RNA-Seq.R1_L004.T C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTGAT_S13_L004_R1_001.fastq.gz 3645122689 FASTQ R1_L004 unaligned CPTAC3 d07af196-f7b8-42ef-b95a-4403e8ede3f3 58968de66ae9232546847ab5f703f202 { 'aliquot_tag': 'ALQ_848122f2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01180.RNA-Seq.R2_L004.T C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTGAT_S13_L004_R2_001.fastq.gz 3897734313 FASTQ R2_L004 unaligned CPTAC3 59baaed9-9a10-4bfe-9657-5ac24fdbd053 9063a284837d98374e6e2dff30863f37 { 'aliquot_tag': 'ALQ_848122f2', 'gdc_sample_type': 'Primary Tumor' } +C3N-01180.RNA-Seq.R1_L004.T C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTGAT_S13_L004_R1_001.fastq.gz 3645122689 FASTQ R1_L004 unaligned CPTAC3 d07af196-f7b8-42ef-b95a-4403e8ede3f3 58968de66ae9232546847ab5f703f202 { 'aliquot_tag': 'ALQ_848122f2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01180.RNA-Seq.R2_L004.T C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 170908_UNC31-K00269_0080_BHLJ52BBXX_ACTGAT_S13_L004_R2_001.fastq.gz 3897734313 FASTQ R2_L004 unaligned CPTAC3 59baaed9-9a10-4bfe-9657-5ac24fdbd053 9063a284837d98374e6e2dff30863f37 { 'aliquot_tag': 'ALQ_848122f2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-01180.RNA-Seq.transcriptome.T.hg38 C3N-01180 CCRCC RNA-Seq tumor CPT0088970006 1332bf19-4e07-4cdf-abc7-5359ba62a54d.rna_seq.transcriptome.gdc_realn.bam 10661221615 BAM transcriptome harmonized CPTAC3 861830de-bb5d-45f4-8525-6942e0749d3a 6a7ca2192054376fd0fb30ccc93150dd { 'aliquot_tag': 'ALQ_848122f2', 'gdc_sample_type': 'Primary Tumor' } C3N-01180.WGS.N C3N-01180 CCRCC WGS blood_normal CPT0089010002 CPT0089010002.WholeGenome.RP-1303.bam 65469560970 BAM aligned CPTAC3 f5d9c481-d4c6-4b37-aa82-5d2b9c23d96a 32b3c893635e13da71e3e358f81665ba { 'aliquot_tag': 'ALQ_8dd44937', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01180.WGS.N.hg38 C3N-01180 CCRCC WGS blood_normal CPT0089010002 05e1d252-9d46-47b7-9948-9b5dd30e67e3_gdc_realn.bam 97287608468 BAM harmonized CPTAC3 bcc33626-4667-47c9-a402-8746520a80dd 0aaceb35d90ee316168690cb3c12e7b6 { 'aliquot_tag': 'ALQ_8dd44937', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24545,18 +26430,24 @@ C3N-01180.WXS.N.hg38 C3N-01180 CCRCC WXS blood_normal CPT0089010002 05e1d252-9d4 C3N-01180.WXS.T C3N-01180 CCRCC WXS tumor CPT0088970009 CPT0088970009.WholeExome.RP-1303.bam 27294197186 BAM aligned CPTAC3 5c18e392-714d-4f5d-8488-d20ace442cf0 4cd46966f633c83e651d3042b67084b4 { 'aliquot_tag': 'ALQ_143e3f63', 'gdc_sample_type': 'Primary Tumor' } C3N-01180.WXS.T.hg38 C3N-01180 CCRCC WXS tumor CPT0088970009 5aa36474-344c-4507-9cf4-b2d8c03b34c0_gdc_realn.bam 37234625238 BAM harmonized CPTAC3 d6aad1de-5c2e-4ea3-9400-8ed05ad799ff b6f391ef25ef3b52b59ae2d5fe76ac01 { 'aliquot_tag': 'ALQ_143e3f63', 'gdc_sample_type': 'Primary Tumor' } C3N-01191.miRNA-Seq.A C3N-01191 GBM miRNA-Seq tissue_normal CPT0402700010 210702_UNC32-K00270_0289_AHKJ22BBXY_CATGGC_S31_L005_R1_001.unaln.bam 290053129 BAM unaligned CPTAC3 d3dd4a04-44a7-4422-8f6d-7ace7888b09b f9c1805f36fe57ad2fcc3ade02116dc8 { 'aliquot_tag': 'ALQ_d6aa1e11', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01191.RNA-Seq.R1_L005.A C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R1_001.fastq.gz 4292142230 FASTQ R1_L005 unaligned CPTAC3 72c15ae7-3d7a-4f6e-ab4f-f82e92009ff4 cd279c856a08eda5e1d7be53c70c7e1e { 'aliquot_tag': 'ALQ_d6aa1e11', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01191.RNA-Seq.R2_L005.A C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R2_001.fastq.gz 4572187365 FASTQ R2_L005 unaligned CPTAC3 7ee179a1-f928-4601-b0a9-647dad31f4fd f09cf1f6aba78db7f6b0ceb48ba9958e { 'aliquot_tag': 'ALQ_d6aa1e11', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01191.miRNA-Seq.A.hg38 C3N-01191 GBM miRNA-Seq tissue_normal CPT0402700010 197c71a9-d007-4a10-b4ee-1f3827d66ce5_mirnaseq_gdc_realn.bam 316551357 BAM harmonized CPTAC3 cd09bf30-6dcd-458b-bef9-d228867b0b9d 7de09daece77e8b506e00adc716cbe71 { 'aliquot_tag': 'ALQ_d6aa1e11', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01191.RNA-Seq.chimeric.A.hg38 C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 a7f1d5f7-221e-4ce7-9e91-ede68059dc8d.rna_seq.chimeric.gdc_realn.bam 164817895 BAM chimeric harmonized CPTAC3 44e78f64-a4f1-47c9-84e7-9808033fee9c 66661334d4660f8b3a92cad7cc71b509 { 'aliquot_tag': 'ALQ_d6aa1e11', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01191.RNA-Seq.genomic.A.hg38 C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 a7f1d5f7-221e-4ce7-9e91-ede68059dc8d.rna_seq.genomic.gdc_realn.bam 9213919004 BAM genomic harmonized CPTAC3 9a2efa90-6c0f-488f-9866-843156c927d4 b99eb30f75d1bea9c986ae8b94efeabe { 'aliquot_tag': 'ALQ_d6aa1e11', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01191.RNA-Seq.R1_L005.A C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R1_001.fastq.gz 4292142230 FASTQ R1_L005 unaligned CPTAC3 72c15ae7-3d7a-4f6e-ab4f-f82e92009ff4 cd279c856a08eda5e1d7be53c70c7e1e { 'aliquot_tag': 'ALQ_d6aa1e11', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01191.RNA-Seq.R2_L005.A C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 210708_UNC32-K00270_0290_BHLLHHBBXY_TGCGAGAC-CATTGTTG_S20_L005_R2_001.fastq.gz 4572187365 FASTQ R2_L005 unaligned CPTAC3 7ee179a1-f928-4601-b0a9-647dad31f4fd f09cf1f6aba78db7f6b0ceb48ba9958e { 'aliquot_tag': 'ALQ_d6aa1e11', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01191.RNA-Seq.transcriptome.A.hg38 C3N-01191 GBM RNA-Seq tissue_normal CPT0402700010 a7f1d5f7-221e-4ce7-9e91-ede68059dc8d.rna_seq.transcriptome.gdc_realn.bam 10970767592 BAM transcriptome harmonized CPTAC3 a8be9106-90c4-4910-97ad-191e7eed5551 54355df7e132faa403742d3bf3ff4d1b { 'aliquot_tag': 'ALQ_d6aa1e11', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01191.WXS.A C3N-01191 GBM WXS tissue_normal CPT0402700007 CPT0402700007.WholeExome.RP-1303.bam 28467491827 BAM aligned CPTAC3 db0aa74f-75b0-4c87-8267-7e7d449e76db 9f1fef72d8b687403dd2a44ed089e14b { 'aliquot_tag': 'ALQ_51d5baf3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01191.WXS.A.hg38 C3N-01191 GBM WXS tissue_normal CPT0402700007 a926769c-4f8b-489a-9339-88c74a323423_wxs_gdc_realn.bam 39150535552 BAM harmonized CPTAC3 a40bdbe8-5de1-484e-964f-ff03bf16e848 9471241473659d120b5a597b1c220138 { 'aliquot_tag': 'ALQ_51d5baf3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01191.WXS.N C3N-01191 GBM WXS blood_normal CPT0402750002 CPT0402750002.WholeExome.RP-1303.bam 35545540392 BAM aligned CPTAC3 42123d2d-53fd-445f-a834-939085063605 50df2bff8cfcd5e146602b6b3d3538b5 { 'aliquot_tag': 'ALQ_e95fc10c', 'gdc_sample_type': 'Blood Derived Normal' } +C3N-01191.WXS.N.hg38 C3N-01191 GBM WXS blood_normal CPT0402750002 a0970679-8442-4057-b84f-477450a88256_wxs_gdc_realn.bam 49650135090 BAM harmonized CPTAC3 693176e7-e87c-49ef-9740-6f39f73e2633 3ca2a31532da05cb1eafd21bf240df58 { 'aliquot_tag': 'ALQ_e95fc10c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01192.MethArray.Green.T C3N-01192 GBM Methylation Array tumor CPT0087950009 202234380024_R06C01_Grn.idat 13676246 IDAT Green NA CPTAC3 2658143c-074b-405e-9f3e-4abc3cb2e007 58f0f469c81607a77b2446e52c485695 { 'aliquot_tag': 'ALQ_98b61cea', 'gdc_sample_type': 'Primary Tumor' } C3N-01192.MethArray.Red.T C3N-01192 GBM Methylation Array tumor CPT0087950009 202234380024_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 2f11936a-8f5a-4124-b086-2c10ac8ab4c5 ccaaa82be14be0f7e40283e5c8650d9a { 'aliquot_tag': 'ALQ_98b61cea', 'gdc_sample_type': 'Primary Tumor' } C3N-01192.miRNA-Seq.T C3N-01192 GBM miRNA-Seq tumor CPT0087950006 180724_UNC32-K00270_0106_BHWK3MBBXX_GAGTGG_S44_L008_R1_001.unaln.bam 292910804 BAM unaligned CPTAC3 d58ca110-1c3f-48ff-86a7-d0a5b3dde7d7 16509f98ee05d30b9ce4e631b71d35f5 { 'aliquot_tag': 'ALQ_809017b', 'gdc_sample_type': 'Primary Tumor' } C3N-01192.miRNA-Seq.T.hg38 C3N-01192 GBM miRNA-Seq tumor CPT0087950006 239de7c6-89c3-4b9d-8222-5d0124e73f76_mirnaseq_gdc_realn.bam 316850254 BAM harmonized CPTAC3 f60a6cd3-d6e2-4a87-b6a8-f564a6c77f9a f1ccaad97faec64607b6982ac986d57a { 'aliquot_tag': 'ALQ_809017b', 'gdc_sample_type': 'Primary Tumor' } C3N-01192.RNA-Seq.chimeric.T.hg38 C3N-01192 GBM RNA-Seq tumor CPT0087950006 3542bc9c-ce17-4129-90fe-b1bfee35e00d.rna_seq.chimeric.gdc_realn.bam 53093648 BAM chimeric harmonized CPTAC3 d0a9c595-2395-42fc-a892-d5c6d8f0ff7f e72c7c25d323d76547a87f3f56dc1727 { 'aliquot_tag': 'ALQ_809017b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01192.RNA-Seq.genomic.T.hg38 C3N-01192 GBM RNA-Seq tumor CPT0087950006 3542bc9c-ce17-4129-90fe-b1bfee35e00d.rna_seq.genomic.gdc_realn.bam 10153664616 BAM genomic harmonized CPTAC3 3abf733f-3a07-4142-8010-0309737e91c0 0ac32de7b0064b68e48a339a3537c79c { 'aliquot_tag': 'ALQ_809017b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01192.RNA-Seq.R1_L008.T C3N-01192 GBM RNA-Seq tumor CPT0087950006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R1_001.fastq.gz 4559078143 FASTQ R1_L008 unaligned CPTAC3 8586880b-19f8-43da-a85b-7ffc96dcfe6e 918d088606e2947da452986af766d2ae { 'aliquot_tag': 'ALQ_809017b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01192.RNA-Seq.R2_L008.T C3N-01192 GBM RNA-Seq tumor CPT0087950006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R2_001.fastq.gz 5032932202 FASTQ R2_L008 unaligned CPTAC3 400ea065-5905-41ba-86de-b5986720714d 89b608f4be723544235892fd941c39ba { 'aliquot_tag': 'ALQ_809017b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01192.RNA-Seq.genomic.T.hg38 C3N-01192 GBM RNA-Seq tumor CPT0087950006 3542bc9c-ce17-4129-90fe-b1bfee35e00d.rna_seq.genomic.gdc_realn.bam 10153664616 BAM genomic harmonized CPTAC3 4ff8f311-10e7-483b-8e86-5adb6b1a02dd 0ac32de7b0064b68e48a339a3537c79c { 'aliquot_tag': 'ALQ_809017b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01192.RNA-Seq.R1_L008.T C3N-01192 GBM RNA-Seq tumor CPT0087950006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R1_001.fastq.gz 4559078143 FASTQ R1_L008 unaligned CPTAC3 8586880b-19f8-43da-a85b-7ffc96dcfe6e 918d088606e2947da452986af766d2ae { 'aliquot_tag': 'ALQ_809017b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01192.RNA-Seq.R2_L008.T C3N-01192 GBM RNA-Seq tumor CPT0087950006 171129_UNC32-K00270_0066_AHM25VBBXX_ACTGAT_S22_L008_R2_001.fastq.gz 5032932202 FASTQ R2_L008 unaligned CPTAC3 400ea065-5905-41ba-86de-b5986720714d 89b608f4be723544235892fd941c39ba { 'aliquot_tag': 'ALQ_809017b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01192.RNA-Seq.transcriptome.T.hg38 C3N-01192 GBM RNA-Seq tumor CPT0087950006 3542bc9c-ce17-4129-90fe-b1bfee35e00d.rna_seq.transcriptome.gdc_realn.bam 12419851304 BAM transcriptome harmonized CPTAC3 ebc65c90-31f6-49c0-ad44-c3655bbb3a8c 7cf3e5c5556d441a3acf6b36cca2bf17 { 'aliquot_tag': 'ALQ_809017b', 'gdc_sample_type': 'Primary Tumor' } C3N-01192.WGS.N C3N-01192 GBM WGS blood_normal CPT0087980002 CPT0087980002.WholeGenome.RP-1303.bam 69705723979 BAM aligned CPTAC3 8316a058-3015-4a6f-858e-7d3958f255ec 6f41be0674653ebc0c0e14a4005fa669 { 'aliquot_tag': 'ALQ_f7f401d3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01192.WGS.N.hg38 C3N-01192 GBM WGS blood_normal CPT0087980002 300522b0-ac2f-4ec7-a5ae-cd55519df19c_wgs_gdc_realn.bam 102084073930 BAM harmonized CPTAC3 ff0b98e8-93b8-4492-91ee-259293a5571a ee2d3dc529e427e8709e0b8efcd0895c { 'aliquot_tag': 'ALQ_f7f401d3', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24576,12 +26467,12 @@ C3N-01194.miRNA-Seq.T C3N-01194 LSCC miRNA-Seq tumor CPT0079050006 190228_UNC32- C3N-01194.miRNA-Seq.T.hg38 C3N-01194 LSCC miRNA-Seq tumor CPT0079050006 a5e454ee-0c7d-4a5a-879f-856d7600178a_mirnaseq_gdc_realn.bam 202538118 BAM harmonized CPTAC3 ed63f126-d531-4f3d-806a-d81af15a080f 45efe66aa0121b6795f2888a5a4c5dc1 { 'aliquot_tag': 'ALQ_a6193942', 'gdc_sample_type': 'Primary Tumor' } C3N-01194.RNA-Seq.chimeric.A.hg38 C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 08e14781-2e42-4ae9-9480-d785e15ad022.rna_seq.chimeric.gdc_realn.bam 48329890 BAM chimeric harmonized CPTAC3 f48f56ed-92ca-483a-a8bc-700e7b4a7efb 1520f446ab5d806ad027b52382f00ecb { 'aliquot_tag': 'ALQ_e1b94392', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01194.RNA-Seq.chimeric.T.hg38 C3N-01194 LSCC RNA-Seq tumor CPT0079050006 452aeaa2-575b-46aa-b8b3-07158cf2bf03.rna_seq.chimeric.gdc_realn.bam 158433579 BAM chimeric harmonized CPTAC3 03acb33a-a706-4089-9060-047405485be0 f46c0ca6481ab03d0332d7c9dccaf09f { 'aliquot_tag': 'ALQ_a6193942', 'gdc_sample_type': 'Primary Tumor' } -C3N-01194.RNA-Seq.genomic.A.hg38 C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 08e14781-2e42-4ae9-9480-d785e15ad022.rna_seq.genomic.gdc_realn.bam 9605289202 BAM genomic harmonized CPTAC3 e1ac506c-a2f3-4e98-962d-87a093ccdeba eacdfaa05e771f285a25f6dccd5e775e { 'aliquot_tag': 'ALQ_e1b94392', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01194.RNA-Seq.genomic.T.hg38 C3N-01194 LSCC RNA-Seq tumor CPT0079050006 452aeaa2-575b-46aa-b8b3-07158cf2bf03.rna_seq.genomic.gdc_realn.bam 8497339252 BAM genomic harmonized CPTAC3 adb78167-0cc0-45a9-b7e7-26252d3456a9 3879668d7ed3b7f1f66dd4ccc961bcc7 { 'aliquot_tag': 'ALQ_a6193942', 'gdc_sample_type': 'Primary Tumor' } -C3N-01194.RNA-Seq.R1_L001.T C3N-01194 LSCC RNA-Seq tumor CPT0079050006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R1_001.fastq.gz 3917404062 FASTQ R1_L001 unaligned CPTAC3 dfc915d2-984c-466f-85e0-12a68f0413ad 149cb8a9c167dca2103a8635d89037e9 { 'aliquot_tag': 'ALQ_a6193942', 'gdc_sample_type': 'Primary Tumor' } -C3N-01194.RNA-Seq.R1_L005.A C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 180516_UNC32-K00270_0095_AHTY5LBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4284636321 FASTQ R1_L005 unaligned CPTAC3 c8f80524-a45c-47de-9262-48c781488318 1b3e0d5d616159dcbda47b9a20591d5c { 'aliquot_tag': 'ALQ_e1b94392', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01194.RNA-Seq.R2_L001.T C3N-01194 LSCC RNA-Seq tumor CPT0079050006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 4230230199 FASTQ R2_L001 unaligned CPTAC3 fe123d94-ffe4-4a32-8729-df53114e81b9 ca5cf5fac5627dc016d1031b4ae07bc2 { 'aliquot_tag': 'ALQ_a6193942', 'gdc_sample_type': 'Primary Tumor' } -C3N-01194.RNA-Seq.R2_L005.A C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 180516_UNC32-K00270_0095_AHTY5LBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4679137235 FASTQ R2_L005 unaligned CPTAC3 5ca5e4b2-d3bf-47b9-893c-35b8caf13fca 9fa514176d2224d2a8f8b14e1ba00f0f { 'aliquot_tag': 'ALQ_e1b94392', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01194.RNA-Seq.genomic.A.hg38 C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 08e14781-2e42-4ae9-9480-d785e15ad022.rna_seq.genomic.gdc_realn.bam 9605289202 BAM genomic harmonized CPTAC3 1b190480-217d-496b-9f4a-5d6015f62de4 eacdfaa05e771f285a25f6dccd5e775e { 'aliquot_tag': 'ALQ_e1b94392', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01194.RNA-Seq.genomic.T.hg38 C3N-01194 LSCC RNA-Seq tumor CPT0079050006 452aeaa2-575b-46aa-b8b3-07158cf2bf03.rna_seq.genomic.gdc_realn.bam 8497339252 BAM genomic harmonized CPTAC3 04341626-a157-4bdc-b406-3e28bf2ba14c 3879668d7ed3b7f1f66dd4ccc961bcc7 { 'aliquot_tag': 'ALQ_a6193942', 'gdc_sample_type': 'Primary Tumor' } +C3N-01194.RNA-Seq.R1_L001.T C3N-01194 LSCC RNA-Seq tumor CPT0079050006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R1_001.fastq.gz 3917404062 FASTQ R1_L001 unaligned CPTAC3 dfc915d2-984c-466f-85e0-12a68f0413ad 149cb8a9c167dca2103a8635d89037e9 { 'aliquot_tag': 'ALQ_a6193942', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01194.RNA-Seq.R1_L005.A C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 180516_UNC32-K00270_0095_AHTY5LBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 4284636321 FASTQ R1_L005 unaligned CPTAC3 c8f80524-a45c-47de-9262-48c781488318 1b3e0d5d616159dcbda47b9a20591d5c { 'aliquot_tag': 'ALQ_e1b94392', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01194.RNA-Seq.R2_L001.T C3N-01194 LSCC RNA-Seq tumor CPT0079050006 170905_UNC31-K00269_0079_AHLCF7BBXX_TAGCTT_S2_L001_R2_001.fastq.gz 4230230199 FASTQ R2_L001 unaligned CPTAC3 fe123d94-ffe4-4a32-8729-df53114e81b9 ca5cf5fac5627dc016d1031b4ae07bc2 { 'aliquot_tag': 'ALQ_a6193942', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01194.RNA-Seq.R2_L005.A C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 180516_UNC32-K00270_0095_AHTY5LBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4679137235 FASTQ R2_L005 unaligned CPTAC3 5ca5e4b2-d3bf-47b9-893c-35b8caf13fca 9fa514176d2224d2a8f8b14e1ba00f0f { 'aliquot_tag': 'ALQ_e1b94392', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-01194.RNA-Seq.transcriptome.A.hg38 C3N-01194 LSCC RNA-Seq tissue_normal CPT0079060006 08e14781-2e42-4ae9-9480-d785e15ad022.rna_seq.transcriptome.gdc_realn.bam 11299790638 BAM transcriptome harmonized CPTAC3 a4294fc8-4a30-409e-bcd2-d88fad0ef0e3 7622b7e68c8f649343d74a32ea71bf06 { 'aliquot_tag': 'ALQ_e1b94392', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01194.RNA-Seq.transcriptome.T.hg38 C3N-01194 LSCC RNA-Seq tumor CPT0079050006 452aeaa2-575b-46aa-b8b3-07158cf2bf03.rna_seq.transcriptome.gdc_realn.bam 11079203487 BAM transcriptome harmonized CPTAC3 ed525a96-ab7e-488e-9705-24393e28b46e 4a88b9155aa32995e841df329ef308ae { 'aliquot_tag': 'ALQ_a6193942', 'gdc_sample_type': 'Primary Tumor' } C3N-01194.WGS.A C3N-01194 LSCC WGS tissue_normal CPT0079060009 CPT0079060009.WholeGenome.RP-1303.bam 52291412351 BAM aligned CPTAC3 1618b45e-373b-442f-b1cf-080e4120cfff 45dded24f2208c49eefa4505f755ee1b { 'aliquot_tag': 'ALQ_71065e03', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -24601,9 +26492,9 @@ C3N-01196.MethArray.Red.T C3N-01196 GBM Methylation Array tumor CPT0078580006 20 C3N-01196.miRNA-Seq.T C3N-01196 GBM miRNA-Seq tumor CPT0078580013 181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L006_R1_001.unaln.bam 206362742 BAM unaligned CPTAC3 b3f2e525-38d7-494f-b587-3f293678cc8b 8b369807526a62c21fd0924258b17103 { 'aliquot_tag': 'ALQ_c142a23a', 'gdc_sample_type': 'Primary Tumor' } C3N-01196.miRNA-Seq.T.hg38 C3N-01196 GBM miRNA-Seq tumor CPT0078580013 d17d429b-e4bc-4188-ac35-559f73d39ae0_mirnaseq_gdc_realn.bam 236984162 BAM harmonized CPTAC3 a3d5b935-eef6-4183-af38-c7df1c81b50e ebfad0f3ba227f925abdb23a4ddf4054 { 'aliquot_tag': 'ALQ_c142a23a', 'gdc_sample_type': 'Primary Tumor' } C3N-01196.RNA-Seq.chimeric.T.hg38 C3N-01196 GBM RNA-Seq tumor CPT0078580013 ee8feffb-6b6e-461c-9e91-7db700ca5ea9.rna_seq.chimeric.gdc_realn.bam 49301826 BAM chimeric harmonized CPTAC3 a4520135-1db6-4d21-9a1a-436e9c7dbc07 f500129fbbd8c673d9336e8832249af6 { 'aliquot_tag': 'ALQ_c142a23a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01196.RNA-Seq.genomic.T.hg38 C3N-01196 GBM RNA-Seq tumor CPT0078580013 ee8feffb-6b6e-461c-9e91-7db700ca5ea9.rna_seq.genomic.gdc_realn.bam 8798799871 BAM genomic harmonized CPTAC3 42f972fa-c55f-4db9-9eb3-7d829d243465 22959709261bd7ee843cf50d8ea6ff26 { 'aliquot_tag': 'ALQ_c142a23a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01196.RNA-Seq.R1_L007.T C3N-01196 GBM RNA-Seq tumor CPT0078580013 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R1_001.fastq.gz 4050665258 FASTQ R1_L007 unaligned CPTAC3 9cf704de-fe0f-426b-8067-eece3a94120e 50d4c3606258242455ed0a8b2a224108 { 'aliquot_tag': 'ALQ_c142a23a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01196.RNA-Seq.R2_L007.T C3N-01196 GBM RNA-Seq tumor CPT0078580013 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4408066540 FASTQ R2_L007 unaligned CPTAC3 0149b324-0f53-4425-aed2-1d785545cce6 80949e8ebd2b158ae3d8a34c8f92af12 { 'aliquot_tag': 'ALQ_c142a23a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01196.RNA-Seq.genomic.T.hg38 C3N-01196 GBM RNA-Seq tumor CPT0078580013 ee8feffb-6b6e-461c-9e91-7db700ca5ea9.rna_seq.genomic.gdc_realn.bam 8798799871 BAM genomic harmonized CPTAC3 de295c3b-b24b-4cfd-93be-efa5294f8e17 22959709261bd7ee843cf50d8ea6ff26 { 'aliquot_tag': 'ALQ_c142a23a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01196.RNA-Seq.R1_L007.T C3N-01196 GBM RNA-Seq tumor CPT0078580013 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R1_001.fastq.gz 4050665258 FASTQ R1_L007 unaligned CPTAC3 9cf704de-fe0f-426b-8067-eece3a94120e 50d4c3606258242455ed0a8b2a224108 { 'aliquot_tag': 'ALQ_c142a23a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01196.RNA-Seq.R2_L007.T C3N-01196 GBM RNA-Seq tumor CPT0078580013 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L007_R2_001.fastq.gz 4408066540 FASTQ R2_L007 unaligned CPTAC3 0149b324-0f53-4425-aed2-1d785545cce6 80949e8ebd2b158ae3d8a34c8f92af12 { 'aliquot_tag': 'ALQ_c142a23a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01196.RNA-Seq.transcriptome.T.hg38 C3N-01196 GBM RNA-Seq tumor CPT0078580013 ee8feffb-6b6e-461c-9e91-7db700ca5ea9.rna_seq.transcriptome.gdc_realn.bam 8193991005 BAM transcriptome harmonized CPTAC3 60f3f6df-050d-4887-87ff-0a26ed58ea96 497883dde1927a1efb9a99c4e1834e66 { 'aliquot_tag': 'ALQ_c142a23a', 'gdc_sample_type': 'Primary Tumor' } C3N-01196.WGS.N C3N-01196 GBM WGS blood_normal CPT0078600002 CPT0078600002.WholeGenome.RP-1303.bam 71018786399 BAM aligned CPTAC3 cb8193c9-0f40-4226-876c-7b72f711dc20 4fb1144345b56f4f3d63126958f6fabe { 'aliquot_tag': 'ALQ_19ba9a82', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01196.WGS.N.hg38 C3N-01196 GBM WGS blood_normal CPT0078600002 2bb0a549-fd8e-448c-a32f-dc0d41a25a53_gdc_realn.bam 109344171761 BAM harmonized CPTAC3 1f1c0db8-a938-444a-a1b7-d92ead28e401 6cce176a6f820703ad31842d804441b7 { 'aliquot_tag': 'ALQ_19ba9a82', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24617,30 +26508,36 @@ C3N-01197.MethArray.Green.T C3N-01197 GBM Methylation Array tumor CPT0078480013 C3N-01197.MethArray.Red.T C3N-01197 GBM Methylation Array tumor CPT0078480013 202178770109_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 352712cf-df49-4c7f-a1a0-20eee1d36399 d3c628c213e9acb98cb7287f8554fecd { 'aliquot_tag': 'ALQ_a1e719f', 'gdc_sample_type': 'Primary Tumor' } C3N-01197.miRNA-Seq.A C3N-01197 GBM miRNA-Seq tissue_normal CPT0402600016 210702_UNC32-K00270_0289_AHKJ22BBXY_GTGGCC_S17_L005_R1_001.unaln.bam 148198335 BAM unaligned CPTAC3 b453177a-e844-4435-ae74-c4af27fcd7bd a16c60558c47218a0607a30b7c351699 { 'aliquot_tag': 'ALQ_f4956881', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01197.miRNA-Seq.A C3N-01197 GBM miRNA-Seq tissue_normal CPT0402600016 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGGCC_S20_L002_R1_001.unaln.bam 123101063 BAM unaligned CPTAC3 3ed18de1-4d58-4d6f-813e-3cb48b84fc78 cc4bfcee9dbfdeef27ab13cb0ca1f6ac { 'aliquot_tag': 'ALQ_f4956881', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01197.miRNA-Seq.A.hg38 C3N-01197 GBM miRNA-Seq tissue_normal CPT0402600016 600530ed-b90c-41b1-99c2-ac49a4e0c777_mirnaseq_gdc_realn.bam 293890942 BAM harmonized CPTAC3 9b91c568-2074-483d-83fc-60e02c14c5b0 06f28eb5fea967dcc6eeef9aa1ad10ec { 'aliquot_tag': 'ALQ_f4956881', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01197.miRNA-Seq.T C3N-01197 GBM miRNA-Seq tumor CPT0078480009 181113_UNC31-K00269_0164_AH23NNBBXY_TAATCG_S18_L003_R1_001.unaln.bam 298106933 BAM unaligned CPTAC3 51dd4fa7-3518-4a88-94bb-5adba591ef98 2b92da45ba6c81f77463b866aceed47c { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor' } C3N-01197.miRNA-Seq.T.hg38 C3N-01197 GBM miRNA-Seq tumor CPT0078480009 fc3f80e4-8717-45c5-9248-98daf00e5564_mirnaseq_gdc_realn.bam 328842663 BAM harmonized CPTAC3 69198177-80d7-4645-801d-47e40d6fcaca 41de271c56fa13e66debd10122fb6ac4 { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01197.RNA-Seq.chimeric.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 27fed460-a091-4668-b257-f8f19a353e21.rna_seq.chimeric.gdc_realn.bam 58862628 BAM chimeric harmonized CPTAC3 b1273a7a-7f05-4654-ab5f-1415ef89ffba 07ba39c2b2a449eafc70dae9769b9d75 { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01197.RNA-Seq.genomic.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 27fed460-a091-4668-b257-f8f19a353e21.rna_seq.genomic.gdc_realn.bam 8773328803 BAM genomic harmonized CPTAC3 4678bd44-7271-4220-ad15-84766565c0a4 3cd288aac439b60172050050704252dd { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01197.RNA-Seq.R1_L008.A C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ R1_L008 unaligned CPTAC3 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 a0584cec511dc00d3a67653e09522e01 { 'aliquot_tag': 'ALQ_f4956881', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01197.RNA-Seq.R1_L008.T C3N-01197 GBM RNA-Seq tumor CPT0078480009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3932675598 FASTQ R1_L008 unaligned CPTAC3 75e83f5d-ad37-4018-ae11-bc247d76bf0a 16d19bae83e24097ad9fb909f41ead42 { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01197.RNA-Seq.R2_L008.A C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R2_001.fastq.gz 3501805122 FASTQ R2_L008 unaligned CPTAC3 3746a172-d4af-4f52-9dd9-01e6db58f3d7 ee526db09d85ec629a3ca1f93375bd87 { 'aliquot_tag': 'ALQ_f4956881', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01197.RNA-Seq.R2_L008.T C3N-01197 GBM RNA-Seq tumor CPT0078480009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R2_001.fastq.gz 4335422641 FASTQ R2_L008 unaligned CPTAC3 7704b4c6-fc08-4876-9071-7b027ecc807e f89de0faf11f827abc86bf65fac4ab09 { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01197.RNA-Seq.transcriptome.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 27fed460-a091-4668-b257-f8f19a353e21.rna_seq.transcriptome.gdc_realn.bam 7904857075 BAM transcriptome harmonized CPTAC3 110fbb5c-1e61-4f2b-8ffc-c3ef1bd3db2b 04fad24b56876dccbc602857a85dfded { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01197.RNA-Seq.chimeric.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.chimeric.gdc_realn.bam 206730101 BAM chimeric harmonized CPTAC3 e62afb1f-ca78-4c5d-aba7-481f7bf9789b a9691b3de53d1fc53820b2e4314941f4 { 'aliquot_tag': 'ALQ_f4956881', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01197.RNA-Seq.chimeric.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 c0929d23-f0d8-4a78-a7d5-3d31de0d3491.rna_seq.chimeric.gdc_realn.bam 58839962 BAM chimeric harmonized CPTAC3 deb70bba-d681-491a-a4c5-25e61d0bb738 38da9d1804051ac99b68107db76e1b6d { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01197.RNA-Seq.genomic.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.genomic.gdc_realn.bam 7339367256 BAM genomic harmonized CPTAC3 ffe3453d-a051-4309-ad40-267a041fcc47 e4b4299d3563a2b8719585ad58710c4a { 'aliquot_tag': 'ALQ_f4956881', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01197.RNA-Seq.genomic.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 c0929d23-f0d8-4a78-a7d5-3d31de0d3491.rna_seq.genomic.gdc_realn.bam 8774243817 BAM genomic harmonized CPTAC3 7fc90181-3c1b-46c8-8219-cda94cdbf759 4e759a8e9a147dd7d33c726dea5d65a9 { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01197.RNA-Seq.R1_L008.A C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R1_001.fastq.gz 3143256729 FASTQ R1_L008 unaligned CPTAC3 2a6593dd-ae6a-4b75-8cb5-144ff91626b0 a0584cec511dc00d3a67653e09522e01 { 'aliquot_tag': 'ALQ_f4956881', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01197.RNA-Seq.R1_L008.T C3N-01197 GBM RNA-Seq tumor CPT0078480009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R1_001.fastq.gz 3932675598 FASTQ R1_L008 unaligned CPTAC3 75e83f5d-ad37-4018-ae11-bc247d76bf0a 16d19bae83e24097ad9fb909f41ead42 { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01197.RNA-Seq.R2_L008.A C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 210615_UNC31-K00269_0299_BHLFTYBBXY_GACGTCTT-GGTTCACC_S77_L008_R2_001.fastq.gz 3501805122 FASTQ R2_L008 unaligned CPTAC3 3746a172-d4af-4f52-9dd9-01e6db58f3d7 ee526db09d85ec629a3ca1f93375bd87 { 'aliquot_tag': 'ALQ_f4956881', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-01197.RNA-Seq.R2_L008.T C3N-01197 GBM RNA-Seq tumor CPT0078480009 170908_UNC31-K00269_0080_BHLJ52BBXX_ACAGTG_S5_L008_R2_001.fastq.gz 4335422641 FASTQ R2_L008 unaligned CPTAC3 7704b4c6-fc08-4876-9071-7b027ecc807e f89de0faf11f827abc86bf65fac4ab09 { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01197.RNA-Seq.transcriptome.A.hg38 C3N-01197 GBM RNA-Seq tissue_normal CPT0402600016 cbbcfc91-9565-41a0-abaf-27ad59c67346.rna_seq.transcriptome.gdc_realn.bam 7571038644 BAM transcriptome harmonized CPTAC3 e31563aa-79a2-460f-ae72-f127fdefcbbb c5f187ddc9478a22245eb4d5bcfe9ff9 { 'aliquot_tag': 'ALQ_f4956881', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01197.RNA-Seq.transcriptome.T.hg38 C3N-01197 GBM RNA-Seq tumor CPT0078480009 c0929d23-f0d8-4a78-a7d5-3d31de0d3491.rna_seq.transcriptome.gdc_realn.bam 8979310482 BAM transcriptome harmonized CPTAC3 dd93d1cf-5708-477d-997c-f337cd540ff8 b300de4054511d801fe2a7b040249a7f { 'aliquot_tag': 'ALQ_f3d0a9c0', 'gdc_sample_type': 'Primary Tumor' } C3N-01197.WGS.N C3N-01197 GBM WGS blood_normal CPT0078500002 CPT0078500002.WholeGenome.RP-1303.bam 66772005182 BAM aligned CPTAC3 06bad4e8-1b97-41ad-bbe3-e053c16fca3f 5c992aff6785db66e86a0434c1bb4406 { 'aliquot_tag': 'ALQ_9f2ee82c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01197.WGS.N.hg38 C3N-01197 GBM WGS blood_normal CPT0078500002 ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 101210139062 BAM harmonized CPTAC3 8d103cd5-b6ba-499c-b86d-ee90e7722972 1bfd8870fe386bcf70737b557d1dda71 { 'aliquot_tag': 'ALQ_9f2ee82c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01197.WGS.T C3N-01197 GBM WGS tumor CPT0078480013 CPT0078480013.WholeGenome.RP-1303.bam 78605674127 BAM aligned CPTAC3 c8a24121-4eb7-4d42-8835-62bf38c27b67 56882ff859a33ee60f362d0acafc45f3 { 'aliquot_tag': 'ALQ_a1e719f', 'gdc_sample_type': 'Primary Tumor' } C3N-01197.WGS.T.hg38 C3N-01197 GBM WGS tumor CPT0078480013 8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 119236219494 BAM harmonized CPTAC3 69bc2a10-0aee-46d4-8974-e138bea74760 17c0106154f4160e1d04e81a6664e147 { 'aliquot_tag': 'ALQ_a1e719f', 'gdc_sample_type': 'Primary Tumor' } C3N-01197.WXS.A C3N-01197 GBM WXS tissue_normal CPT0402600013 CPT0402600013.WholeExome.RP-1303.bam 17913496431 BAM aligned CPTAC3 d74445a1-60a3-4d33-a053-cb9ef300db97 c10030ec04c9ce713ddc5bdf8042e14f { 'aliquot_tag': 'ALQ_84ff9c0e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01197.WXS.A.hg38 C3N-01197 GBM WXS tissue_normal CPT0402600013 e5c26e9d-b137-4370-8344-f888831ec23e_wxs_gdc_realn.bam 24780989364 BAM harmonized CPTAC3 5b38e81d-3373-4106-8528-4730fc388607 c936ae5e8cf8264923ac6e322ef67ada { 'aliquot_tag': 'ALQ_84ff9c0e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01197.WXS.N C3N-01197 GBM WXS blood_normal CPT0078500002 CPT0078500002.WholeExome.RP-1303.bam 27122734221 BAM aligned CPTAC3 2e853e58-065a-4a19-b3cf-1066f8d7dddb 22028a96afde9dbe69c2dd26673a8838 { 'aliquot_tag': 'ALQ_9f2ee82c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01197.WXS.N.hg38 C3N-01197 GBM WXS blood_normal CPT0078500002 ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 36637489156 BAM harmonized CPTAC3 ba871c1f-1766-4008-8b79-29ec2148b586 037cce1a0c462d957ade8dda8f3cd8c2 { 'aliquot_tag': 'ALQ_9f2ee82c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01197.WXS.T C3N-01197 GBM WXS tumor CPT0078480013 CPT0078480013.WholeExome.RP-1303.bam 31119460682 BAM aligned CPTAC3 742678c4-a327-4aef-be8d-38b26605cb19 1a1a4aa605f5b01ab0b965c616db064b { 'aliquot_tag': 'ALQ_a1e719f', 'gdc_sample_type': 'Primary Tumor' } C3N-01197.WXS.T.hg38 C3N-01197 GBM WXS tumor CPT0078480013 8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 43619971997 BAM harmonized CPTAC3 813f42ab-91e9-4dbc-8d09-bf15289946f8 9bb05be85ddad759ddbc130f235cfa58 { 'aliquot_tag': 'ALQ_a1e719f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01199.miRNA-Seq.T C3N-01199 GBM miRNA-Seq tumor CPT0457680008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTATAC_S7_L003_R1_001.unaln.bam 264368830 BAM unaligned CPTAC3 64dab22d-ddf0-4ceb-9775-95cb13aba156 63b556759c4323d4308c452bf5397ad1 { 'aliquot_tag': 'ALQ_209e1ec5', 'gdc_sample_type': 'Primary Tumor' } C3N-01200.DUP_3a5a9d02.miRNA-Seq.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075150009 200526_UNC32-K00270_0248_BHH7WFBBXY_CACTCA_S26_L002_R1_001.unaln.bam 241941968 BAM unaligned CPTAC3 61f7977f-8b97-47aa-b0bb-192d3ec71e0b 240422199a8feb2dc4a5680bee449dc1 { 'aliquot_tag': 'DUP_3a5a9d02', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_3a5a9d02.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075150009 daec41c7-dc35-4bee-bb66-94e95108d429_mirnaseq_gdc_realn.bam 268769840 BAM harmonized CPTAC3 8feda69f-b67c-4209-b8b8-9d2df3df00ca d37a9dfd293460ee9f9e09c7085d41dd { 'aliquot_tag': 'DUP_3a5a9d02', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_3a5a9d02.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 f41404af-b2ad-4c01-b637-6e033b8b21cd.rna_seq.chimeric.gdc_realn.bam 70328673 BAM chimeric harmonized CPTAC3 57af4e09-abf7-4d40-93dc-49108577f9dd e1211762a0a1130cd82aae4e2e03a074 { 'aliquot_tag': 'DUP_3a5a9d02', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_3a5a9d02.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 f41404af-b2ad-4c01-b637-6e033b8b21cd.rna_seq.genomic.gdc_realn.bam 8820437909 BAM genomic harmonized CPTAC3 87d3f301-3322-4bd1-80b6-d156f8a98656 b1aeb4e31ff2f3e92551a11e656ae554 { 'aliquot_tag': 'DUP_3a5a9d02', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01200.DUP_3a5a9d02.RNA-Seq.R1_L002.T C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R1_001.fastq.gz 4438109303 FASTQ R1_L002 unaligned CPTAC3 30628661-05d5-4fe1-be42-ee30dce69ec0 3fe79581d9ef6d827a13ec2628f09aa0 { 'aliquot_tag': 'DUP_3a5a9d02', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01200.DUP_3a5a9d02.RNA-Seq.R2_L002.T C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R2_001.fastq.gz 4848622324 FASTQ R2_L002 unaligned CPTAC3 10047d32-3565-4e59-be8d-d18f00cf4da7 acaf751e70b615b512f97cf10aeadd70 { 'aliquot_tag': 'DUP_3a5a9d02', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01200.DUP_3a5a9d02.RNA-Seq.R1_L002.T C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R1_001.fastq.gz 4438109303 FASTQ R1_L002 unaligned CPTAC3 30628661-05d5-4fe1-be42-ee30dce69ec0 3fe79581d9ef6d827a13ec2628f09aa0 { 'aliquot_tag': 'DUP_3a5a9d02', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3N-01200.DUP_3a5a9d02.RNA-Seq.R2_L002.T C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R2_001.fastq.gz 4848622324 FASTQ R2_L002 unaligned CPTAC3 10047d32-3565-4e59-be8d-d18f00cf4da7 acaf751e70b615b512f97cf10aeadd70 { 'aliquot_tag': 'DUP_3a5a9d02', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3N-01200.DUP_3a5a9d02.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075150009 f41404af-b2ad-4c01-b637-6e033b8b21cd.rna_seq.transcriptome.gdc_realn.bam 11325945246 BAM transcriptome harmonized CPTAC3 8874fcac-0adf-4854-891f-98b80e838d5b 8142a838db32e50470f84496caf3655a { 'aliquot_tag': 'DUP_3a5a9d02', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_6b3a9db.MethArray.Green.T C3N-01200 CCRCC Methylation Array tumor CPT0075120012 204372030161_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 d258d649-b531-429f-a9aa-407f445dcf13 706a2be41697b6ada0062261c87a6003 { 'aliquot_tag': 'DUP_6b3a9db', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_6b3a9db.MethArray.Red.T C3N-01200 CCRCC Methylation Array tumor CPT0075120012 204372030161_R04C01_Red.idat 13677880 IDAT Red NA CPTAC3 b76ec06c-d83c-4147-9651-07b7ac4500ae b610cd049e08b800f2ba3fc2d4b5e1ff { 'aliquot_tag': 'DUP_6b3a9db', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -24651,23 +26548,23 @@ C3N-01200.DUP_6b3a9db.WXS.T.hg38 C3N-01200 CCRCC WXS tumor CPT0075120012 6b2820d C3N-01200.DUP_73ab4b2.miRNA-Seq.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075140009 200526_UNC32-K00270_0248_BHH7WFBBXY_GAGTGG_S30_L004_R1_001.unaln.bam 216324191 BAM unaligned CPTAC3 720cb1c4-b337-4511-89bb-c9ca5b1d8e4d a61803e54dabfca9182032d71612a432 { 'aliquot_tag': 'DUP_73ab4b2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_73ab4b2.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075140009 973a1136-5bdb-408b-bb02-82c7d86add09_mirnaseq_gdc_realn.bam 238141872 BAM harmonized CPTAC3 e8708b1f-1150-42bc-9866-074dc495ec75 0aa51153497a772e628a11344488550b { 'aliquot_tag': 'DUP_73ab4b2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_73ab4b2.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 cda61860-2690-4f87-8844-3e90a18095f7.rna_seq.chimeric.gdc_realn.bam 246740493 BAM chimeric harmonized CPTAC3 898daa61-8272-4b2b-a474-092a866a2822 da62ee7ce89fef27d603e5bc7b825046 { 'aliquot_tag': 'DUP_73ab4b2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01200.DUP_73ab4b2.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 cda61860-2690-4f87-8844-3e90a18095f7.rna_seq.genomic.gdc_realn.bam 9426360529 BAM genomic harmonized CPTAC3 368f365c-74a7-4304-bb58-c13891bf32a3 fc77cc76b04f9ac5aca992904c594b79 { 'aliquot_tag': 'DUP_73ab4b2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01200.DUP_73ab4b2.RNA-Seq.R1_L001.T C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAGAATT-ACCGGCCA_S3_L001_R1_001.fastq.gz 4434094111 FASTQ R1_L001 unaligned CPTAC3 1c2bca41-bae5-42f4-9001-923894bc5448 fa9f31996a9145aa4311614172a00483 { 'aliquot_tag': 'DUP_73ab4b2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01200.DUP_73ab4b2.RNA-Seq.R2_L001.T C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAGAATT-ACCGGCCA_S3_L001_R2_001.fastq.gz 5377537098 FASTQ R2_L001 unaligned CPTAC3 af9b177e-627b-45d3-8eaf-a1a6dd68dd33 e958bf5c0139ab3372bf7ecd501dea59 { 'aliquot_tag': 'DUP_73ab4b2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01200.DUP_73ab4b2.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 cda61860-2690-4f87-8844-3e90a18095f7.rna_seq.genomic.gdc_realn.bam 9426360529 BAM genomic harmonized CPTAC3 9f1e41b1-f4de-416b-96af-9aa18b2a04cc fc77cc76b04f9ac5aca992904c594b79 { 'aliquot_tag': 'DUP_73ab4b2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01200.DUP_73ab4b2.RNA-Seq.R1_L001.T C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAGAATT-ACCGGCCA_S3_L001_R1_001.fastq.gz 4434094111 FASTQ R1_L001 unaligned CPTAC3 1c2bca41-bae5-42f4-9001-923894bc5448 fa9f31996a9145aa4311614172a00483 { 'aliquot_tag': 'DUP_73ab4b2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3N-01200.DUP_73ab4b2.RNA-Seq.R2_L001.T C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 200519_UNC31-K00269_0279_AHH5VTBBXY_GCAGAATT-ACCGGCCA_S3_L001_R2_001.fastq.gz 5377537098 FASTQ R2_L001 unaligned CPTAC3 af9b177e-627b-45d3-8eaf-a1a6dd68dd33 e958bf5c0139ab3372bf7ecd501dea59 { 'aliquot_tag': 'DUP_73ab4b2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3N-01200.DUP_73ab4b2.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075140009 cda61860-2690-4f87-8844-3e90a18095f7.rna_seq.transcriptome.gdc_realn.bam 12469354286 BAM transcriptome harmonized CPTAC3 be952192-9473-4939-887d-d45b1bdc5d64 d023a1c6a8b5f2467a1a57865e1a340f { 'aliquot_tag': 'DUP_73ab4b2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_7dfae7d2.miRNA-Seq.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075160009 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGGCA_S20_L002_R1_001.unaln.bam 267558533 BAM unaligned CPTAC3 cdd2bbe0-7628-44a4-b65d-e645290c4fd3 253fcc2469290f5e54935bccae86fa0f { 'aliquot_tag': 'DUP_7dfae7d2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_7dfae7d2.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075160009 e7441cf4-70e6-4fdf-ace4-a2c81b051a90_mirnaseq_gdc_realn.bam 297546356 BAM harmonized CPTAC3 037e2e79-6545-4654-9ce0-a9efdf76b82f 6e3ceb68b556eff4a656bbaeb2bdfe9c { 'aliquot_tag': 'DUP_7dfae7d2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_7dfae7d2.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 a6f6d0c2-4309-48c3-829a-7fd30fde6d71.rna_seq.chimeric.gdc_realn.bam 45401910 BAM chimeric harmonized CPTAC3 d2f68940-2a45-4336-8df5-557d8c56717b f4abd893076fc6f0b9f789419b19edd5 { 'aliquot_tag': 'DUP_7dfae7d2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_7dfae7d2.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 a6f6d0c2-4309-48c3-829a-7fd30fde6d71.rna_seq.genomic.gdc_realn.bam 7686721279 BAM genomic harmonized CPTAC3 755236f7-ca80-4ab4-ba03-ed633741a5eb a63835052e75b8279388585cc46bd8ac { 'aliquot_tag': 'DUP_7dfae7d2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01200.DUP_7dfae7d2.RNA-Seq.R1_L007.T C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 200519_UNC31-K00269_0280_BHHKGNBBXY_AACTGTAG-ACGCCGCA_S25_L007_R1_001.fastq.gz 3613492140 FASTQ R1_L007 unaligned CPTAC3 bfb3ff85-07de-41ff-8de3-7b97721ecd15 61b1bdbab74a21e1175e016647cb4d51 { 'aliquot_tag': 'DUP_7dfae7d2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01200.DUP_7dfae7d2.RNA-Seq.R2_L007.T C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 200519_UNC31-K00269_0280_BHHKGNBBXY_AACTGTAG-ACGCCGCA_S25_L007_R2_001.fastq.gz 4159998543 FASTQ R2_L007 unaligned CPTAC3 1f84a087-24d2-4c6c-b25e-638176a6e5b5 8409aab55102c0a282939e6795c3b090 { 'aliquot_tag': 'DUP_7dfae7d2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01200.DUP_7dfae7d2.RNA-Seq.R1_L007.T C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 200519_UNC31-K00269_0280_BHHKGNBBXY_AACTGTAG-ACGCCGCA_S25_L007_R1_001.fastq.gz 3613492140 FASTQ R1_L007 unaligned CPTAC3 bfb3ff85-07de-41ff-8de3-7b97721ecd15 61b1bdbab74a21e1175e016647cb4d51 { 'aliquot_tag': 'DUP_7dfae7d2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L007' } +C3N-01200.DUP_7dfae7d2.RNA-Seq.R2_L007.T C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 200519_UNC31-K00269_0280_BHHKGNBBXY_AACTGTAG-ACGCCGCA_S25_L007_R2_001.fastq.gz 4159998543 FASTQ R2_L007 unaligned CPTAC3 1f84a087-24d2-4c6c-b25e-638176a6e5b5 8409aab55102c0a282939e6795c3b090 { 'aliquot_tag': 'DUP_7dfae7d2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L007' } C3N-01200.DUP_7dfae7d2.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075160009 a6f6d0c2-4309-48c3-829a-7fd30fde6d71.rna_seq.transcriptome.gdc_realn.bam 9607739180 BAM transcriptome harmonized CPTAC3 0076192e-6b77-4f09-a110-bdf90e8626eb eb7a873f1528f02d8db64f14c2291db7 { 'aliquot_tag': 'DUP_7dfae7d2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_887a4112.miRNA-Seq.T C3N-01200 CCRCC miRNA-Seq tumor CPT0075120009 200526_UNC32-K00270_0248_BHH7WFBBXY_CGTACG_S29_L005_R1_001.unaln.bam 342099490 BAM unaligned CPTAC3 c4b8ea54-3e27-4a29-99b3-4f2d599b38ab 75fe50bb036000486e5fd9d231dd6d78 { 'aliquot_tag': 'DUP_887a4112', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_887a4112.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075120009 87dee344-57bc-4dd9-951e-86a5a3c43232_mirnaseq_gdc_realn.bam 372196853 BAM harmonized CPTAC3 3b57ad99-36a2-4b2c-9cf9-0719a26613a8 b63e5d78be94c61da05c7a3e5c0115bb { 'aliquot_tag': 'DUP_887a4112', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_887a4112.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 0714d04f-9157-4e50-b35d-c608728dadae.rna_seq.chimeric.gdc_realn.bam 133467044 BAM chimeric harmonized CPTAC3 5a1a45f4-0f4d-44ee-a020-c90dce7ac045 789838d217852be43e5b6bdad18eab7d { 'aliquot_tag': 'DUP_887a4112', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_887a4112.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 0714d04f-9157-4e50-b35d-c608728dadae.rna_seq.genomic.gdc_realn.bam 5969280822 BAM genomic harmonized CPTAC3 8a760026-8e70-4143-8a6a-b2987b2f740d 6ff02b6ca0020cc7dd89feba9079eb92 { 'aliquot_tag': 'DUP_887a4112', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01200.DUP_887a4112.RNA-Seq.R1_L001.T C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 200519_UNC31-K00269_0279_AHH5VTBBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 2712382703 FASTQ R1_L001 unaligned CPTAC3 54a0b120-5335-4c89-83b8-3a48ef881d16 8ae2511cb4b9e4e6d3c248bb3c74c772 { 'aliquot_tag': 'DUP_887a4112', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01200.DUP_887a4112.RNA-Seq.R2_L001.T C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 200519_UNC31-K00269_0279_AHH5VTBBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3355844855 FASTQ R2_L001 unaligned CPTAC3 36fe36fd-4ec7-4b4b-978f-cc9fddcd3cb1 f4493bff85d611767d33ea4608a9831f { 'aliquot_tag': 'DUP_887a4112', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01200.DUP_887a4112.RNA-Seq.R1_L001.T C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 200519_UNC31-K00269_0279_AHH5VTBBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 2712382703 FASTQ R1_L001 unaligned CPTAC3 54a0b120-5335-4c89-83b8-3a48ef881d16 8ae2511cb4b9e4e6d3c248bb3c74c772 { 'aliquot_tag': 'DUP_887a4112', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3N-01200.DUP_887a4112.RNA-Seq.R2_L001.T C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 200519_UNC31-K00269_0279_AHH5VTBBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3355844855 FASTQ R2_L001 unaligned CPTAC3 36fe36fd-4ec7-4b4b-978f-cc9fddcd3cb1 f4493bff85d611767d33ea4608a9831f { 'aliquot_tag': 'DUP_887a4112', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3N-01200.DUP_887a4112.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075120009 0714d04f-9157-4e50-b35d-c608728dadae.rna_seq.transcriptome.gdc_realn.bam 7951440215 BAM transcriptome harmonized CPTAC3 d95be18d-b065-425f-9012-370b11839818 8ef1e450759784aeb29a4ce06b40eab5 { 'aliquot_tag': 'DUP_887a4112', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_89f35c7b.MethArray.Green.T C3N-01200 CCRCC Methylation Array tumor CPT0075140012 204367490066_R04C01_Grn.idat 13677900 IDAT Green NA CPTAC3 348cf7cc-1f8c-43b8-b674-9765d113ecf3 5bc34987e2a3ed02dbc33dead7154dba { 'aliquot_tag': 'DUP_89f35c7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01200.DUP_89f35c7b.MethArray.Red.T C3N-01200 CCRCC Methylation Array tumor CPT0075140012 204367490066_R04C01_Red.idat 13677900 IDAT Red NA CPTAC3 6d92c5ab-c2a3-4ff8-9a22-b0d54e06cc79 11fad5dcc53fbfc08f4f145867479114 { 'aliquot_tag': 'DUP_89f35c7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -24698,11 +26595,11 @@ C3N-01200.miRNA-Seq.T.hg38 C3N-01200 CCRCC miRNA-Seq tumor CPT0075130006 4a75668 C3N-01200.RNA-Seq.chimeric.A.hg38 C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 4f3edfb4-e7c6-43c3-a017-1ab461f16041.rna_seq.chimeric.gdc_realn.bam 45817811 BAM chimeric harmonized CPTAC3 ac2d3db1-e8a2-4898-82ff-3e002ab71eda 284c66411735122f11bd065d91c420d3 { 'aliquot_tag': 'ALQ_d025d3f3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01200.RNA-Seq.chimeric.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 57b74216-eb65-4157-ab80-18bdff12eec7.rna_seq.chimeric.gdc_realn.bam 183246864 BAM chimeric harmonized CPTAC3 b3d89d00-9544-459c-ba09-9da6b85ea580 73adce848ce3bb6e64ab8a2b15c535fb { 'aliquot_tag': 'ALQ_25a57533', 'gdc_sample_type': 'Primary Tumor' } C3N-01200.RNA-Seq.genomic.A.hg38 C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 4f3edfb4-e7c6-43c3-a017-1ab461f16041.rna_seq.genomic.gdc_realn.bam 7778328329 BAM genomic harmonized CPTAC3 e44bb064-c226-45df-81b6-e9f54e8295c4 3e3be7d8df09741bec1456f83afd92d2 { 'aliquot_tag': 'ALQ_d025d3f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01200.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 57b74216-eb65-4157-ab80-18bdff12eec7.rna_seq.genomic.gdc_realn.bam 7598400010 BAM genomic harmonized CPTAC3 9f0cdf2e-67ad-4889-a8fe-afcefb9879cb c494a029b4e083a510f066bc198fdeb2 { 'aliquot_tag': 'ALQ_25a57533', 'gdc_sample_type': 'Primary Tumor' } -C3N-01200.RNA-Seq.R1_L003.A C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R1_001.fastq.gz 3995140615 FASTQ R1_L003 unaligned CPTAC3 3622b01d-1aed-4d4c-bf81-6f3d3208683f 8c671044dd44df6775bd3c5f6f6c4ddd { 'aliquot_tag': 'ALQ_d025d3f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01200.RNA-Seq.R1_L007.T C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R1_001.fastq.gz 3917366988 FASTQ R1_L007 unaligned CPTAC3 fb2e9eb7-49a1-4810-ad31-58b4411cdd05 2db6ad01747f10e1687299bbffc72669 { 'aliquot_tag': 'ALQ_25a57533', 'gdc_sample_type': 'Primary Tumor' } -C3N-01200.RNA-Seq.R2_L003.A C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R2_001.fastq.gz 4271303352 FASTQ R2_L003 unaligned CPTAC3 8fe43892-e94a-4789-be90-c32591c4a108 b28a1bb504bb81ff6a57b4f7aedcc1a6 { 'aliquot_tag': 'ALQ_d025d3f3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01200.RNA-Seq.R2_L007.T C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R2_001.fastq.gz 4168322645 FASTQ R2_L007 unaligned CPTAC3 def5db7e-16df-4a5f-8d32-ad1dac6b90f2 489ae6a1d73ba66e25f9ea4e0a43b23d { 'aliquot_tag': 'ALQ_25a57533', 'gdc_sample_type': 'Primary Tumor' } +C3N-01200.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 57b74216-eb65-4157-ab80-18bdff12eec7.rna_seq.genomic.gdc_realn.bam 7598400010 BAM genomic harmonized CPTAC3 be7604a6-a252-411a-954d-83cb6ff1ff9f c494a029b4e083a510f066bc198fdeb2 { 'aliquot_tag': 'ALQ_25a57533', 'gdc_sample_type': 'Primary Tumor' } +C3N-01200.RNA-Seq.R1_L003.A C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R1_001.fastq.gz 3995140615 FASTQ R1_L003 unaligned CPTAC3 3622b01d-1aed-4d4c-bf81-6f3d3208683f 8c671044dd44df6775bd3c5f6f6c4ddd { 'aliquot_tag': 'ALQ_d025d3f3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01200.RNA-Seq.R1_L007.T C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R1_001.fastq.gz 3917366988 FASTQ R1_L007 unaligned CPTAC3 fb2e9eb7-49a1-4810-ad31-58b4411cdd05 2db6ad01747f10e1687299bbffc72669 { 'aliquot_tag': 'ALQ_25a57533', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01200.RNA-Seq.R2_L003.A C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R2_001.fastq.gz 4271303352 FASTQ R2_L003 unaligned CPTAC3 8fe43892-e94a-4789-be90-c32591c4a108 b28a1bb504bb81ff6a57b4f7aedcc1a6 { 'aliquot_tag': 'ALQ_d025d3f3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-01200.RNA-Seq.R2_L007.T C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R2_001.fastq.gz 4168322645 FASTQ R2_L007 unaligned CPTAC3 def5db7e-16df-4a5f-8d32-ad1dac6b90f2 489ae6a1d73ba66e25f9ea4e0a43b23d { 'aliquot_tag': 'ALQ_25a57533', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01200.RNA-Seq.transcriptome.A.hg38 C3N-01200 CCRCC RNA-Seq tissue_normal CPT0075170006 4f3edfb4-e7c6-43c3-a017-1ab461f16041.rna_seq.transcriptome.gdc_realn.bam 9731230653 BAM transcriptome harmonized CPTAC3 d377d7cb-f860-4a63-8bcc-a1e717cc95b2 b40867af8ea407b70e6a9c55b411ec82 { 'aliquot_tag': 'ALQ_d025d3f3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01200.RNA-Seq.transcriptome.T.hg38 C3N-01200 CCRCC RNA-Seq tumor CPT0075130006 57b74216-eb65-4157-ab80-18bdff12eec7.rna_seq.transcriptome.gdc_realn.bam 10953737304 BAM transcriptome harmonized CPTAC3 1624fc56-ae22-4979-a882-a5fde95db2c0 b5b8034b647f5184becc552d3ed66578 { 'aliquot_tag': 'ALQ_25a57533', 'gdc_sample_type': 'Primary Tumor' } C3N-01200.WGS.A C3N-01200 CCRCC WGS tissue_normal CPT0075170009 CPT0075170009.WholeGenome.RP-1303.bam 53781174676 BAM aligned CPTAC3 9967b80d-f8d4-4cb0-9e6a-6ce7227b5e18 0e426c27ad566218ab01b9f91f2a3137 { 'aliquot_tag': 'ALQ_409ace62', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -24722,12 +26619,15 @@ C3N-01211.MethArray.Red.T C3N-01211 UCEC Methylation Array tumor CPT0075900009 2 C3N-01211.miRNA-Seq.T C3N-01211 UCEC miRNA-Seq tumor CPT0075900006 181119_UNC31-K00269_0165_AH27WCBBXY_GTAGAG_S41_L005_R1_001.unaln.bam 167252257 BAM unaligned CPTAC3 366b9a85-25c7-44f9-bb90-a449939af4cf 9c3f17d245bbb392a394810277148b6f { 'aliquot_tag': 'ALQ_8e568d8e', 'gdc_sample_type': 'Primary Tumor' } C3N-01211.miRNA-Seq.T.hg38 C3N-01211 UCEC miRNA-Seq tumor CPT0075900006 b9641008-9c73-4e88-9ad6-408686c23501_mirnaseq_gdc_realn.bam 183880492 BAM harmonized CPTAC3 80556270-a9ef-4b05-a115-538826983613 7514a9dbd94a57ba547f5b3354b185f7 { 'aliquot_tag': 'ALQ_8e568d8e', 'gdc_sample_type': 'Primary Tumor' } C3N-01211.RNA-Seq.chimeric.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075900006 5ee23af5-35ec-4f62-bfe6-08948cee2d9b.rna_seq.chimeric.gdc_realn.bam 84200959 BAM chimeric harmonized CPTAC3 5d2519b2-43d1-42e4-8c21-87030f077fe1 1e4e442b857b0f68bc525d8403f3d57f { 'aliquot_tag': 'ALQ_8e568d8e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01211.RNA-Seq.genomic.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075900006 5ee23af5-35ec-4f62-bfe6-08948cee2d9b.rna_seq.genomic.gdc_realn.bam 8147565319 BAM genomic harmonized CPTAC3 51b8bdc6-25f8-4854-a6a1-7a967d86c97b e81114b49fc4a03a4621013f726c9e7b { 'aliquot_tag': 'ALQ_8e568d8e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01211.RNA-Seq.R1_L008.T C3N-01211 UCEC RNA-Seq tumor CPT0075900006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L008_R1_001.fastq.gz 4274317593 FASTQ R1_L008 unaligned CPTAC3 420d5f06-1231-4f16-b090-9e27da0b3c83 9e86ceee3a441dd91286c74cb7c0a3e9 { 'aliquot_tag': 'ALQ_8e568d8e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01211.RNA-Seq.R1_.T C3N-01211 UCEC RNA-Seq tumor CPT0075960001 20210714_P1_H4_WB7988_plate1_S87_R1_001.fastq.gz 8339586889 FASTQ R1_ unaligned CPTAC3 df324cba-88cc-4f37-ad5f-f6ff1e73f953 e2d1c9634b40acc0836d99e9da80e66b { 'aliquot_tag': 'ALQ_9f72ed8d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01211.RNA-Seq.R2_L008.T C3N-01211 UCEC RNA-Seq tumor CPT0075900006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L008_R2_001.fastq.gz 4562443542 FASTQ R2_L008 unaligned CPTAC3 cc46aefa-d070-4531-b35b-69fef48f8fd4 6e7453240a7fc5690fa0abd65b52ae08 { 'aliquot_tag': 'ALQ_8e568d8e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01211.RNA-Seq.R2_.T C3N-01211 UCEC RNA-Seq tumor CPT0075960001 20210714_P1_H4_WB7988_plate1_S87_R2_001.fastq.gz 8608755124 FASTQ R2_ unaligned CPTAC3 e61827ed-8251-4e1a-b9e5-9563d3230230 8b33dece1d610d3879f010d3b18a99db { 'aliquot_tag': 'ALQ_9f72ed8d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01211.RNA-Seq.chimeric.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075960001 d79abaf2-fc86-4da0-9eb1-2f46a83460c6.rna_seq.chimeric.gdc_realn.bam 233469227 BAM chimeric harmonized CPTAC3 4bdfbc75-2949-4f4e-999d-b072582d8c28 999f7ea0645c9d1e307e6394d838a49d { 'aliquot_tag': 'ALQ_9f72ed8d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01211.RNA-Seq.genomic.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075900006 5ee23af5-35ec-4f62-bfe6-08948cee2d9b.rna_seq.genomic.gdc_realn.bam 8147565319 BAM genomic harmonized CPTAC3 bfab949d-c34a-43c4-958e-d0f8f1ea9363 e81114b49fc4a03a4621013f726c9e7b { 'aliquot_tag': 'ALQ_8e568d8e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01211.RNA-Seq.genomic.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075960001 d79abaf2-fc86-4da0-9eb1-2f46a83460c6.rna_seq.genomic.gdc_realn.bam 13141106631 BAM genomic harmonized CPTAC3 9a084d84-99d8-4530-95ca-955c3f40fd9f b2d48667fee45057bbd1ce9c8d6d9449 { 'aliquot_tag': 'ALQ_9f72ed8d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01211.RNA-Seq.R1_L008.T C3N-01211 UCEC RNA-Seq tumor CPT0075900006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L008_R1_001.fastq.gz 4274317593 FASTQ R1_L008 unaligned CPTAC3 420d5f06-1231-4f16-b090-9e27da0b3c83 9e86ceee3a441dd91286c74cb7c0a3e9 { 'aliquot_tag': 'ALQ_8e568d8e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01211.RNA-Seq.R2_L008.T C3N-01211 UCEC RNA-Seq tumor CPT0075900006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGGCC_S8_L008_R2_001.fastq.gz 4562443542 FASTQ R2_L008 unaligned CPTAC3 cc46aefa-d070-4531-b35b-69fef48f8fd4 6e7453240a7fc5690fa0abd65b52ae08 { 'aliquot_tag': 'ALQ_8e568d8e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01211.RNA-Seq.T C3N-01211 UCEC RNA-Seq tumor CPT0075960001 20210714_P1_H4_WB7988_plate1_S87_R1_001.fastq.gz 8339586889 FASTQ unaligned CPTAC3 df324cba-88cc-4f37-ad5f-f6ff1e73f953 e2d1c9634b40acc0836d99e9da80e66b +C3N-01211.RNA-Seq.T C3N-01211 UCEC RNA-Seq tumor CPT0075960001 20210714_P1_H4_WB7988_plate1_S87_R2_001.fastq.gz 8608755124 FASTQ unaligned CPTAC3 e61827ed-8251-4e1a-b9e5-9563d3230230 8b33dece1d610d3879f010d3b18a99db C3N-01211.RNA-Seq.transcriptome.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075900006 5ee23af5-35ec-4f62-bfe6-08948cee2d9b.rna_seq.transcriptome.gdc_realn.bam 12230418460 BAM transcriptome harmonized CPTAC3 8cd4adc9-3231-4f67-8768-0cca6c1122d9 e0b6337153cd1811780fcf6698f77097 { 'aliquot_tag': 'ALQ_8e568d8e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01211.RNA-Seq.transcriptome.T.hg38 C3N-01211 UCEC RNA-Seq tumor CPT0075960001 d79abaf2-fc86-4da0-9eb1-2f46a83460c6.rna_seq.transcriptome.gdc_realn.bam 9690492748 BAM transcriptome harmonized CPTAC3 d4786834-40e7-4236-a3a2-92925771881f c6cc6764cd649f5d9669ac0437eb3b76 { 'aliquot_tag': 'ALQ_9f72ed8d', 'gdc_sample_type': 'Primary Tumor' } C3N-01211.WGS.N C3N-01211 UCEC WGS blood_normal CPT0076020002 CPT0076020002.WholeGenome.RP-1303.bam 70337765007 BAM aligned CPTAC3 785cea37-b675-46d4-a365-2d89abec88ed 580dfaa4cb03fea28a6a5db16436a440 { 'aliquot_tag': 'ALQ_e51c51a2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01211.WGS.N.hg38 C3N-01211 UCEC WGS blood_normal CPT0076020002 a5ae9005-f7c0-4291-b288-df8380b29a04_gdc_realn.bam 104504545486 BAM harmonized CPTAC3 9c47ab95-7b62-4528-a9e5-b73bfe99dab3 08b8855c0dcbb7e658538eadbdcaa10e { 'aliquot_tag': 'ALQ_e51c51a2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01211.WGS.T C3N-01211 UCEC WGS tumor CPT0075900009 CPT0075900009.WholeGenome.RP-1303.bam 56552709015 BAM aligned CPTAC3 1776eceb-fe90-4426-b9f4-1b392ac4c2fd c72b6b378ab7daaf3ef753c595402467 { 'aliquot_tag': 'ALQ_1ee9901f', 'gdc_sample_type': 'Primary Tumor' } @@ -24741,12 +26641,15 @@ C3N-01212.MethArray.Red.T C3N-01212 UCEC Methylation Array tumor CPT0075380009 2 C3N-01212.miRNA-Seq.T C3N-01212 UCEC miRNA-Seq tumor CPT0075380006 181012_UNC32-K00270_0124_AH223CBBXY_ATGTCA_S36_L007_R1_001.unaln.bam 203254036 BAM unaligned CPTAC3 78e018e7-01e5-451c-a99a-625b7c4aacbc d157102136863e1a2db5991724861c5b { 'aliquot_tag': 'ALQ_1fbde529', 'gdc_sample_type': 'Primary Tumor' } C3N-01212.miRNA-Seq.T.hg38 C3N-01212 UCEC miRNA-Seq tumor CPT0075380006 cf9259fc-ea3c-459c-a78a-057177b629a3_mirnaseq_gdc_realn.bam 228094544 BAM harmonized CPTAC3 6fecbc3b-f9f5-498d-996d-a79400ad92b8 88eff3c5cfda2dc16cc4bca12750582f { 'aliquot_tag': 'ALQ_1fbde529', 'gdc_sample_type': 'Primary Tumor' } C3N-01212.RNA-Seq.chimeric.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075380006 2aca75ad-6dc7-4688-bac2-1503f9ae8850.rna_seq.chimeric.gdc_realn.bam 437341720 BAM chimeric harmonized CPTAC3 58287dc5-4ad5-4397-8711-ac5346c816fd d663a9cd4b0d1a6b751060a03eba3855 { 'aliquot_tag': 'ALQ_1fbde529', 'gdc_sample_type': 'Primary Tumor' } -C3N-01212.RNA-Seq.genomic.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075380006 2aca75ad-6dc7-4688-bac2-1503f9ae8850.rna_seq.genomic.gdc_realn.bam 8518631995 BAM genomic harmonized CPTAC3 2710a566-b675-46c9-a2f9-2c7ff193e6a7 b92d4d78c193322471f6f255a5dbd9a7 { 'aliquot_tag': 'ALQ_1fbde529', 'gdc_sample_type': 'Primary Tumor' } -C3N-01212.RNA-Seq.R1_L008.T C3N-01212 UCEC RNA-Seq tumor CPT0075380006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L008_R1_001.fastq.gz 4185056852 FASTQ R1_L008 unaligned CPTAC3 77cb79fc-c379-49ee-a61a-861b047a8d63 c813117f6af232a9c6072c44a60b7f5b { 'aliquot_tag': 'ALQ_1fbde529', 'gdc_sample_type': 'Primary Tumor' } -C3N-01212.RNA-Seq.R1_.T C3N-01212 UCEC RNA-Seq tumor CPT0075420001 20210714_P1_D11_WB7988_plate1_S47_R1_001.fastq.gz 9187105552 FASTQ R1_ unaligned CPTAC3 afd732e5-edb1-4d55-8a0e-ae7ad9be868b ab76b217c77c6dd17d1f3268e0402e8a { 'aliquot_tag': 'ALQ_d66c5893', 'gdc_sample_type': 'Primary Tumor' } -C3N-01212.RNA-Seq.R2_L008.T C3N-01212 UCEC RNA-Seq tumor CPT0075380006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L008_R2_001.fastq.gz 4542196085 FASTQ R2_L008 unaligned CPTAC3 70834e25-c655-4715-a7f8-57741576d457 ce47c2da72922be2558c3478339c4f08 { 'aliquot_tag': 'ALQ_1fbde529', 'gdc_sample_type': 'Primary Tumor' } -C3N-01212.RNA-Seq.R2_.T C3N-01212 UCEC RNA-Seq tumor CPT0075420001 20210714_P1_D11_WB7988_plate1_S47_R2_001.fastq.gz 9636009516 FASTQ R2_ unaligned CPTAC3 a24c88f8-e3d9-48c7-8db8-bca6d591bade edc6079edf83dc0c2bf851b42ca06060 { 'aliquot_tag': 'ALQ_d66c5893', 'gdc_sample_type': 'Primary Tumor' } +C3N-01212.RNA-Seq.chimeric.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075420001 7303be79-a3ba-4c13-8693-8677bfa0cbdc.rna_seq.chimeric.gdc_realn.bam 278954346 BAM chimeric harmonized CPTAC3 020b2707-0b7e-4a27-a758-15b8a49807d3 7371d24017e18938be1e48bb5dd1469d { 'aliquot_tag': 'ALQ_d66c5893', 'gdc_sample_type': 'Primary Tumor' } +C3N-01212.RNA-Seq.genomic.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075380006 2aca75ad-6dc7-4688-bac2-1503f9ae8850.rna_seq.genomic.gdc_realn.bam 8518631995 BAM genomic harmonized CPTAC3 c741e030-c63f-4e05-ac8f-d5a14dc9ce3a b92d4d78c193322471f6f255a5dbd9a7 { 'aliquot_tag': 'ALQ_1fbde529', 'gdc_sample_type': 'Primary Tumor' } +C3N-01212.RNA-Seq.genomic.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075420001 7303be79-a3ba-4c13-8693-8677bfa0cbdc.rna_seq.genomic.gdc_realn.bam 14761576322 BAM genomic harmonized CPTAC3 4e4a4770-db12-43b7-9f0a-3705dc962164 4f89ddc193d515c52a5c4d5f37f1a22c { 'aliquot_tag': 'ALQ_d66c5893', 'gdc_sample_type': 'Primary Tumor' } +C3N-01212.RNA-Seq.R1_L008.T C3N-01212 UCEC RNA-Seq tumor CPT0075380006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L008_R1_001.fastq.gz 4185056852 FASTQ R1_L008 unaligned CPTAC3 77cb79fc-c379-49ee-a61a-861b047a8d63 c813117f6af232a9c6072c44a60b7f5b { 'aliquot_tag': 'ALQ_1fbde529', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01212.RNA-Seq.R2_L008.T C3N-01212 UCEC RNA-Seq tumor CPT0075380006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTCCGC_S5_L008_R2_001.fastq.gz 4542196085 FASTQ R2_L008 unaligned CPTAC3 70834e25-c655-4715-a7f8-57741576d457 ce47c2da72922be2558c3478339c4f08 { 'aliquot_tag': 'ALQ_1fbde529', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01212.RNA-Seq.T C3N-01212 UCEC RNA-Seq tumor CPT0075420001 20210714_P1_D11_WB7988_plate1_S47_R1_001.fastq.gz 9187105552 FASTQ unaligned CPTAC3 afd732e5-edb1-4d55-8a0e-ae7ad9be868b ab76b217c77c6dd17d1f3268e0402e8a +C3N-01212.RNA-Seq.T C3N-01212 UCEC RNA-Seq tumor CPT0075420001 20210714_P1_D11_WB7988_plate1_S47_R2_001.fastq.gz 9636009516 FASTQ unaligned CPTAC3 a24c88f8-e3d9-48c7-8db8-bca6d591bade edc6079edf83dc0c2bf851b42ca06060 C3N-01212.RNA-Seq.transcriptome.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075380006 2aca75ad-6dc7-4688-bac2-1503f9ae8850.rna_seq.transcriptome.gdc_realn.bam 12181868455 BAM transcriptome harmonized CPTAC3 e7abcf1f-b30f-4010-a76e-cfabfdee5afe e7dd707c19cb4295a8026ffa2ffe5261 { 'aliquot_tag': 'ALQ_1fbde529', 'gdc_sample_type': 'Primary Tumor' } +C3N-01212.RNA-Seq.transcriptome.T.hg38 C3N-01212 UCEC RNA-Seq tumor CPT0075420001 7303be79-a3ba-4c13-8693-8677bfa0cbdc.rna_seq.transcriptome.gdc_realn.bam 9819944242 BAM transcriptome harmonized CPTAC3 64f15f47-cc41-49cc-abf3-1f79bedabc2b 197d8a08786fb5a84369aae3bb44e702 { 'aliquot_tag': 'ALQ_d66c5893', 'gdc_sample_type': 'Primary Tumor' } C3N-01212.WGS.N C3N-01212 UCEC WGS blood_normal CPT0075440002 CPT0075440002.WholeGenome.RP-1303.bam 65852195825 BAM aligned CPTAC3 f94f0c39-afc8-44c9-b319-3b81d96c3100 0cb251d3fba8d7fed71d9b20c31ac67a { 'aliquot_tag': 'ALQ_c025fc89', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01212.WGS.N.hg38 C3N-01212 UCEC WGS blood_normal CPT0075440002 de27373b-d06d-4246-bfbd-1fb88cc0f8fd_gdc_realn.bam 98497925335 BAM harmonized CPTAC3 4bc8e960-760d-4cf1-b6b3-b52374645e4f b951f08d59b9aba9c90b64590d030344 { 'aliquot_tag': 'ALQ_c025fc89', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01212.WGS.T C3N-01212 UCEC WGS tumor CPT0075380009 CPT0075380009.WholeGenome.RP-1303.bam 69308469108 BAM aligned CPTAC3 6dd3d8c6-5562-4319-8c95-1c73871961e8 dd8d6e81a28d2902e80709b4e82e62ac { 'aliquot_tag': 'ALQ_8f02f8b8', 'gdc_sample_type': 'Primary Tumor' } @@ -24760,9 +26663,9 @@ C3N-01213.MethArray.Red.T C3N-01213 CCRCC Methylation Array tumor CPT0075720009 C3N-01213.miRNA-Seq.T C3N-01213 CCRCC miRNA-Seq tumor CPT0075720006 181012_UNC32-K00270_0124_AH223CBBXY_CCGTCC_S37_L007_R1_001.unaln.bam 251502869 BAM unaligned CPTAC3 a965c462-1a8e-47a5-974b-c369f5d555b3 6e99e065652062a736c6c8b2eff9a990 { 'aliquot_tag': 'ALQ_ce9cbf9e', 'gdc_sample_type': 'Primary Tumor' } C3N-01213.miRNA-Seq.T.hg38 C3N-01213 CCRCC miRNA-Seq tumor CPT0075720006 b8253e74-2592-462e-9e21-5937cc65e798_mirnaseq_gdc_realn.bam 279708359 BAM harmonized CPTAC3 df607b18-689a-4624-9011-00495ed5dd79 cacb2548f8aead72badcd111199c0daa { 'aliquot_tag': 'ALQ_ce9cbf9e', 'gdc_sample_type': 'Primary Tumor' } C3N-01213.RNA-Seq.chimeric.T.hg38 C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 df545bea-d992-4f6d-ab45-7e4288730f49.rna_seq.chimeric.gdc_realn.bam 67007115 BAM chimeric harmonized CPTAC3 4b9ca860-943c-45f8-a363-29db469ffcde 6c75a5399c82eaaed18bd08169d8b622 { 'aliquot_tag': 'ALQ_ce9cbf9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01213.RNA-Seq.genomic.T.hg38 C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 df545bea-d992-4f6d-ab45-7e4288730f49.rna_seq.genomic.gdc_realn.bam 7506941801 BAM genomic harmonized CPTAC3 4e3ca015-63e4-4c01-a1f6-0902eb8ffcfa 5cc3be7fbb0264aa9e9ba307946497d5 { 'aliquot_tag': 'ALQ_ce9cbf9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01213.RNA-Seq.R1_L008.T C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L008_R1_001.fastq.gz 3625868213 FASTQ R1_L008 unaligned CPTAC3 605fbbb8-d32e-4b79-affe-28179485475b 59abd3e96c944d55da98901cf6989806 { 'aliquot_tag': 'ALQ_ce9cbf9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01213.RNA-Seq.R2_L008.T C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L008_R2_001.fastq.gz 3780022459 FASTQ R2_L008 unaligned CPTAC3 cc5b3a0c-4ad0-4ec2-abb5-3a6de4cc6e97 c4e14df7ca5f5d3d5477b6c8071092c6 { 'aliquot_tag': 'ALQ_ce9cbf9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01213.RNA-Seq.genomic.T.hg38 C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 df545bea-d992-4f6d-ab45-7e4288730f49.rna_seq.genomic.gdc_realn.bam 7506941801 BAM genomic harmonized CPTAC3 d13ec729-6132-407b-924d-2ff0f68fe1ac 5cc3be7fbb0264aa9e9ba307946497d5 { 'aliquot_tag': 'ALQ_ce9cbf9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01213.RNA-Seq.R1_L008.T C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L008_R1_001.fastq.gz 3625868213 FASTQ R1_L008 unaligned CPTAC3 605fbbb8-d32e-4b79-affe-28179485475b 59abd3e96c944d55da98901cf6989806 { 'aliquot_tag': 'ALQ_ce9cbf9e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01213.RNA-Seq.R2_L008.T C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L008_R2_001.fastq.gz 3780022459 FASTQ R2_L008 unaligned CPTAC3 cc5b3a0c-4ad0-4ec2-abb5-3a6de4cc6e97 c4e14df7ca5f5d3d5477b6c8071092c6 { 'aliquot_tag': 'ALQ_ce9cbf9e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01213.RNA-Seq.transcriptome.T.hg38 C3N-01213 CCRCC RNA-Seq tumor CPT0075720006 df545bea-d992-4f6d-ab45-7e4288730f49.rna_seq.transcriptome.gdc_realn.bam 9183361922 BAM transcriptome harmonized CPTAC3 c591d97a-07cf-47d6-ae40-1461e0c372c2 75a809f2b9eeb82ffa08ae6cddca4620 { 'aliquot_tag': 'ALQ_ce9cbf9e', 'gdc_sample_type': 'Primary Tumor' } C3N-01213.WGS.N C3N-01213 CCRCC WGS blood_normal CPT0075800002 CPT0075800002.WholeGenome.RP-1303.bam 59012031674 BAM aligned CPTAC3 4ec096d0-fb1b-4835-8a1c-3199720a791d 8a38b5bd8f8cead98608ff47ac8142c8 { 'aliquot_tag': 'ALQ_42679a32', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01213.WGS.N.hg38 C3N-01213 CCRCC WGS blood_normal CPT0075800002 fc169817-4564-405b-a1b0-f21511c2d8c8_gdc_realn.bam 88247466707 BAM harmonized CPTAC3 0a61d30d-48e3-419c-8049-4487b3ecc830 d68a52b4f815e012cfcabfbdc163876f { 'aliquot_tag': 'ALQ_42679a32', 'gdc_sample_type': 'Blood Derived Normal' } @@ -24775,9 +26678,9 @@ C3N-01213.WXS.T.hg38 C3N-01213 CCRCC WXS tumor CPT0075720009 3adc61ac-213f-4512- C3N-01214.DUP_150fda74.miRNA-Seq.T C3N-01214 CCRCC miRNA-Seq tumor CPT0075540016 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTGAT_S21_L002_R1_001.unaln.bam 284557553 BAM unaligned CPTAC3 67bc7004-b4f9-4db3-b650-051bee2ea139 9d0f34517587dc826275db1d06b56d51 { 'aliquot_tag': 'DUP_150fda74', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01214.DUP_150fda74.miRNA-Seq.T.hg38 C3N-01214 CCRCC miRNA-Seq tumor CPT0075540016 94ba8a1a-7c34-4f6f-afdc-d7a439375533_mirnaseq_gdc_realn.bam 307401928 BAM harmonized CPTAC3 b6adf665-858f-4c52-ba74-8df7c307a417 7a2250a0d41f2274df796eb84439aa23 { 'aliquot_tag': 'DUP_150fda74', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01214.DUP_150fda74.RNA-Seq.chimeric.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 f911de16-b44b-4df6-806c-cd272f3c558f.rna_seq.chimeric.gdc_realn.bam 30339994 BAM chimeric harmonized CPTAC3 636a56a0-2a42-410a-be88-0e55fb10b315 52840b5cff88d89ec8f9b5adcf18af91 { 'aliquot_tag': 'DUP_150fda74', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01214.DUP_150fda74.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 f911de16-b44b-4df6-806c-cd272f3c558f.rna_seq.genomic.gdc_realn.bam 7258412959 BAM genomic harmonized CPTAC3 b2411ad4-ceb7-4234-a22d-efb02db07204 7392ab99a698892ae61a1ab98b76934f { 'aliquot_tag': 'DUP_150fda74', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01214.DUP_150fda74.RNA-Seq.R1_L006.T C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 200519_UNC31-K00269_0280_BHHKGNBBXY_CAATTAAC-CGAGATAT_S22_L006_R1_001.fastq.gz 3396025531 FASTQ R1_L006 unaligned CPTAC3 29c903b5-dfa7-4a7a-b93f-496886871939 4d0c22aed508fb8faa0c895dcd37279b { 'aliquot_tag': 'DUP_150fda74', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01214.DUP_150fda74.RNA-Seq.R2_L006.T C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 200519_UNC31-K00269_0280_BHHKGNBBXY_CAATTAAC-CGAGATAT_S22_L006_R2_001.fastq.gz 3838234476 FASTQ R2_L006 unaligned CPTAC3 35d9563c-26b2-4e51-b02a-8632bab707df 970db3ec391bfde1c45f5b38cf5d9866 { 'aliquot_tag': 'DUP_150fda74', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01214.DUP_150fda74.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 f911de16-b44b-4df6-806c-cd272f3c558f.rna_seq.genomic.gdc_realn.bam 7258412959 BAM genomic harmonized CPTAC3 fadb0dbe-05ae-4eae-b7c3-1602cdaad104 7392ab99a698892ae61a1ab98b76934f { 'aliquot_tag': 'DUP_150fda74', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01214.DUP_150fda74.RNA-Seq.R1_L006.T C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 200519_UNC31-K00269_0280_BHHKGNBBXY_CAATTAAC-CGAGATAT_S22_L006_R1_001.fastq.gz 3396025531 FASTQ R1_L006 unaligned CPTAC3 29c903b5-dfa7-4a7a-b93f-496886871939 4d0c22aed508fb8faa0c895dcd37279b { 'aliquot_tag': 'DUP_150fda74', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3N-01214.DUP_150fda74.RNA-Seq.R2_L006.T C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 200519_UNC31-K00269_0280_BHHKGNBBXY_CAATTAAC-CGAGATAT_S22_L006_R2_001.fastq.gz 3838234476 FASTQ R2_L006 unaligned CPTAC3 35d9563c-26b2-4e51-b02a-8632bab707df 970db3ec391bfde1c45f5b38cf5d9866 { 'aliquot_tag': 'DUP_150fda74', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3N-01214.DUP_150fda74.RNA-Seq.transcriptome.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075540016 f911de16-b44b-4df6-806c-cd272f3c558f.rna_seq.transcriptome.gdc_realn.bam 9994353333 BAM transcriptome harmonized CPTAC3 4ab46630-895c-49c2-a8b3-9124d70de5ba 6ab12870348df35767216f797fdf567c { 'aliquot_tag': 'DUP_150fda74', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01214.DUP_2f0237dd.MethArray.Green.T C3N-01214 CCRCC Methylation Array tumor CPT0075550012 204367400148_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 fdfb61c4-8b69-45dc-86e5-434cbd9e17b5 2064aaca384d999dfc83d364c02ee5c2 { 'aliquot_tag': 'DUP_2f0237dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01214.DUP_2f0237dd.MethArray.Red.T C3N-01214 CCRCC Methylation Array tumor CPT0075550012 204367400148_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 7698c430-0194-422f-a7c7-6001224bb939 6eb33908d8c1cc6c52b0c3123dcbf076 { 'aliquot_tag': 'DUP_2f0237dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -24788,9 +26691,9 @@ C3N-01214.DUP_2f0237dd.WXS.T.hg38 C3N-01214 CCRCC WXS tumor CPT0075550012 a558ec C3N-01214.DUP_a87d933f.miRNA-Seq.T C3N-01214 CCRCC miRNA-Seq tumor CPT0075550005 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L002_R1_001.unaln.bam 249654007 BAM unaligned CPTAC3 690d0423-5d37-4f9f-98da-78579cb2bcd5 2537a79f6106e2edb52ca6127c0e4f01 { 'aliquot_tag': 'DUP_a87d933f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01214.DUP_a87d933f.miRNA-Seq.T.hg38 C3N-01214 CCRCC miRNA-Seq tumor CPT0075550005 c294705a-234f-4937-ad7a-8321bb424370_mirnaseq_gdc_realn.bam 282699691 BAM harmonized CPTAC3 db4c4e68-c447-4761-985b-31a276d2bbe9 e158f35fecd7149314db202e02beb8fe { 'aliquot_tag': 'DUP_a87d933f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01214.DUP_a87d933f.RNA-Seq.chimeric.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 d67d86fe-8dd3-49c4-9c22-f8e681edb97d.rna_seq.chimeric.gdc_realn.bam 36408352 BAM chimeric harmonized CPTAC3 8df147a4-dafc-400b-88ec-212a16f163e7 46acb755ddad717ba642b49c88e9d76e { 'aliquot_tag': 'DUP_a87d933f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01214.DUP_a87d933f.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 d67d86fe-8dd3-49c4-9c22-f8e681edb97d.rna_seq.genomic.gdc_realn.bam 8719844840 BAM genomic harmonized CPTAC3 984f45a7-54e2-4f17-9f1f-cc557726e119 c9c9af2066a63a01e07ef9652c098a7d { 'aliquot_tag': 'DUP_a87d933f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01214.DUP_a87d933f.RNA-Seq.R1_L006.T C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGCCGGT-TAGAGCGC_S24_L006_R1_001.fastq.gz 4076990725 FASTQ R1_L006 unaligned CPTAC3 a54ec209-3dee-4648-8faf-0e4c910e63d4 260813837d210e7fc3ea253d76843a7e { 'aliquot_tag': 'DUP_a87d933f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01214.DUP_a87d933f.RNA-Seq.R2_L006.T C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGCCGGT-TAGAGCGC_S24_L006_R2_001.fastq.gz 4730544227 FASTQ R2_L006 unaligned CPTAC3 97999ddd-c398-400d-abf8-28fc172880d8 bb7d641bd93711db1b2894e3bbcda58d { 'aliquot_tag': 'DUP_a87d933f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01214.DUP_a87d933f.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 d67d86fe-8dd3-49c4-9c22-f8e681edb97d.rna_seq.genomic.gdc_realn.bam 8719844840 BAM genomic harmonized CPTAC3 e0fe29b8-796c-4b71-835c-6b0acb1cd12b c9c9af2066a63a01e07ef9652c098a7d { 'aliquot_tag': 'DUP_a87d933f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01214.DUP_a87d933f.RNA-Seq.R1_L006.T C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGCCGGT-TAGAGCGC_S24_L006_R1_001.fastq.gz 4076990725 FASTQ R1_L006 unaligned CPTAC3 a54ec209-3dee-4648-8faf-0e4c910e63d4 260813837d210e7fc3ea253d76843a7e { 'aliquot_tag': 'DUP_a87d933f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L006' } +C3N-01214.DUP_a87d933f.RNA-Seq.R2_L006.T C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 200519_UNC31-K00269_0280_BHHKGNBBXY_TGGCCGGT-TAGAGCGC_S24_L006_R2_001.fastq.gz 4730544227 FASTQ R2_L006 unaligned CPTAC3 97999ddd-c398-400d-abf8-28fc172880d8 bb7d641bd93711db1b2894e3bbcda58d { 'aliquot_tag': 'DUP_a87d933f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L006' } C3N-01214.DUP_a87d933f.RNA-Seq.transcriptome.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075550005 d67d86fe-8dd3-49c4-9c22-f8e681edb97d.rna_seq.transcriptome.gdc_realn.bam 11983536796 BAM transcriptome harmonized CPTAC3 f094d44a-9854-4b99-b353-1ac54d15e901 11d8c4edb80fc2d82163afe5c8e8c1ca { 'aliquot_tag': 'DUP_a87d933f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01214.MethArray.Green.A C3N-01214 CCRCC Methylation Array tissue_normal CPT0075570009 204930630107_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 ac735eb3-844a-4c84-a88d-67e0c30aca17 68cd02b41780c4890ddfbda909e2594a { 'aliquot_tag': 'ALQ_db0b8c74', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01214.MethArray.Green.T C3N-01214 CCRCC Methylation Array tumor CPT0075560006 202176290116_R08C01_Grn.idat 13676226 IDAT Green NA CPTAC3 b3985b9b-5848-4086-b34c-7b106644fa91 d9574e03c1433149f5c7cc55554002b8 { 'aliquot_tag': 'ALQ_76d4b855', 'gdc_sample_type': 'Primary Tumor' } @@ -24802,12 +26705,12 @@ C3N-01214.miRNA-Seq.T C3N-01214 CCRCC miRNA-Seq tumor CPT0075560009 181012_UNC32 C3N-01214.miRNA-Seq.T.hg38 C3N-01214 CCRCC miRNA-Seq tumor CPT0075560009 056f614f-96da-4f09-9bca-79a215669f68_mirnaseq_gdc_realn.bam 251652815 BAM harmonized CPTAC3 ce5dac62-bae6-4013-bcde-dc7ed2009d5b 86ae91cc39d7b329b8a3fbf24d981c26 { 'aliquot_tag': 'ALQ_e66ba5c4', 'gdc_sample_type': 'Primary Tumor' } C3N-01214.RNA-Seq.chimeric.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 13d46968-f884-4f5c-ab40-8b260d2d8102.rna_seq.chimeric.gdc_realn.bam 39368977 BAM chimeric harmonized CPTAC3 6180ca04-ad38-4c95-bdd1-bea8de8c9425 e749eeb9ae7878689affb2e87db202d0 { 'aliquot_tag': 'ALQ_4bb491e5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01214.RNA-Seq.chimeric.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 f3897613-9474-4694-97da-6f67fea325cd.rna_seq.chimeric.gdc_realn.bam 44387738 BAM chimeric harmonized CPTAC3 393b1ebd-db36-487f-a77e-4124cb9ecc34 10ff373751da00edf2bb901af67b6044 { 'aliquot_tag': 'ALQ_e66ba5c4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01214.RNA-Seq.genomic.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 13d46968-f884-4f5c-ab40-8b260d2d8102.rna_seq.genomic.gdc_realn.bam 6873532336 BAM genomic harmonized CPTAC3 aaa15a77-6589-4c23-9a6d-d9062447b252 30095e8fa70204b36a0f9274cfb725c1 { 'aliquot_tag': 'ALQ_4bb491e5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01214.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 f3897613-9474-4694-97da-6f67fea325cd.rna_seq.genomic.gdc_realn.bam 10067897434 BAM genomic harmonized CPTAC3 febbf04e-cd07-4f0b-b50a-34a63f300b1e 9ea87e8d5c69443be9acfe8483907a38 { 'aliquot_tag': 'ALQ_e66ba5c4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01214.RNA-Seq.R1_L001.T C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3991034378 FASTQ R1_L001 unaligned CPTAC3 4a1f3026-ed39-4b21-82e4-9ba14ccbee40 a688d2376b17c21b7a78e1b203611aa5 { 'aliquot_tag': 'ALQ_e66ba5c4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01214.RNA-Seq.R1_L003.A C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 171212_UNC31-K00269_0102_AHN5MMBBXX_CCGTCC_S10_L003_R1_001.fastq.gz 3727522006 FASTQ R1_L003 unaligned CPTAC3 3239d526-b422-40a6-9101-0ecaa0d593e3 2ad812bfd0caeefb414848409a542c0e { 'aliquot_tag': 'ALQ_4bb491e5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01214.RNA-Seq.R2_L001.T C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4249427390 FASTQ R2_L001 unaligned CPTAC3 0714c54f-a096-4e96-ac18-54d9703396bf 01ca764e78347e28c275b81f70a611b9 { 'aliquot_tag': 'ALQ_e66ba5c4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01214.RNA-Seq.R2_L003.A C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 171212_UNC31-K00269_0102_AHN5MMBBXX_CCGTCC_S10_L003_R2_001.fastq.gz 3614155260 FASTQ R2_L003 unaligned CPTAC3 10bd76f6-3520-42ca-ba2c-f51ea8fde07d 766b21e07836d46f4ee05bbf8b217317 { 'aliquot_tag': 'ALQ_4bb491e5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01214.RNA-Seq.genomic.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 13d46968-f884-4f5c-ab40-8b260d2d8102.rna_seq.genomic.gdc_realn.bam 6873532336 BAM genomic harmonized CPTAC3 3cec932c-c9d6-4c94-9578-7aee3bcef723 30095e8fa70204b36a0f9274cfb725c1 { 'aliquot_tag': 'ALQ_4bb491e5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01214.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 f3897613-9474-4694-97da-6f67fea325cd.rna_seq.genomic.gdc_realn.bam 10067897434 BAM genomic harmonized CPTAC3 e6f0603d-967c-409c-bab2-7480b7a029fc 9ea87e8d5c69443be9acfe8483907a38 { 'aliquot_tag': 'ALQ_e66ba5c4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01214.RNA-Seq.R1_L001.T C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3991034378 FASTQ R1_L001 unaligned CPTAC3 4a1f3026-ed39-4b21-82e4-9ba14ccbee40 a688d2376b17c21b7a78e1b203611aa5 { 'aliquot_tag': 'ALQ_e66ba5c4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01214.RNA-Seq.R1_L003.A C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 171212_UNC31-K00269_0102_AHN5MMBBXX_CCGTCC_S10_L003_R1_001.fastq.gz 3727522006 FASTQ R1_L003 unaligned CPTAC3 3239d526-b422-40a6-9101-0ecaa0d593e3 2ad812bfd0caeefb414848409a542c0e { 'aliquot_tag': 'ALQ_4bb491e5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01214.RNA-Seq.R2_L001.T C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4249427390 FASTQ R2_L001 unaligned CPTAC3 0714c54f-a096-4e96-ac18-54d9703396bf 01ca764e78347e28c275b81f70a611b9 { 'aliquot_tag': 'ALQ_e66ba5c4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01214.RNA-Seq.R2_L003.A C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 171212_UNC31-K00269_0102_AHN5MMBBXX_CCGTCC_S10_L003_R2_001.fastq.gz 3614155260 FASTQ R2_L003 unaligned CPTAC3 10bd76f6-3520-42ca-ba2c-f51ea8fde07d 766b21e07836d46f4ee05bbf8b217317 { 'aliquot_tag': 'ALQ_4bb491e5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3N-01214.RNA-Seq.transcriptome.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal CPT0075570006 13d46968-f884-4f5c-ab40-8b260d2d8102.rna_seq.transcriptome.gdc_realn.bam 8287127496 BAM transcriptome harmonized CPTAC3 2ec4679f-9f91-4874-a125-e349974db60d ad848240a823189659417962f6c7c741 { 'aliquot_tag': 'ALQ_4bb491e5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01214.RNA-Seq.transcriptome.T.hg38 C3N-01214 CCRCC RNA-Seq tumor CPT0075560009 f3897613-9474-4694-97da-6f67fea325cd.rna_seq.transcriptome.gdc_realn.bam 9755163097 BAM transcriptome harmonized CPTAC3 a50b5c53-23a2-45cd-b5da-5be3807facb0 6e4ab9b8b3280a7d0ef2fd3a7f3c28d8 { 'aliquot_tag': 'ALQ_e66ba5c4', 'gdc_sample_type': 'Primary Tumor' } C3N-01214.WGS.A C3N-01214 CCRCC WGS tissue_normal CPT0075570009 CPT0075570009.WholeGenome.RP-1303.bam 59618084354 BAM aligned CPTAC3 76693a7a-af8d-4163-bb3d-19698dfcd916 27a4a4b042f7afc3c07f1e6175660eec { 'aliquot_tag': 'ALQ_db0b8c74', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -24827,12 +26730,15 @@ C3N-01217.MethArray.Red.T C3N-01217 UCEC Methylation Array tumor CPT0076500006 2 C3N-01217.miRNA-Seq.T C3N-01217 UCEC miRNA-Seq tumor CPT0076500009 181012_UNC32-K00270_0124_AH223CBBXY_ATTCCT_S1_L006_R1_001.unaln.bam 195169636 BAM unaligned CPTAC3 e0cbb9ad-fb3c-433b-9169-d0acd89433fb 8e622aef8ab391370ea38970ab5e7aaa { 'aliquot_tag': 'ALQ_58c34af9', 'gdc_sample_type': 'Primary Tumor' } C3N-01217.miRNA-Seq.T.hg38 C3N-01217 UCEC miRNA-Seq tumor CPT0076500009 a6ae24ae-db56-45c8-a90b-a755eb50e99c_mirnaseq_gdc_realn.bam 220247415 BAM harmonized CPTAC3 687aebe0-bf35-4c1b-9400-2295d1e9bd04 c94977bff48f9437ba01cee32ef71f36 { 'aliquot_tag': 'ALQ_58c34af9', 'gdc_sample_type': 'Primary Tumor' } C3N-01217.RNA-Seq.chimeric.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076500009 660e8d0b-a1a0-425f-9ac5-c494c4411357.rna_seq.chimeric.gdc_realn.bam 65658426 BAM chimeric harmonized CPTAC3 6d4dd08d-8b98-44e6-a370-470bc7de04da ee85454e451590596a3c5adfbdc7073d { 'aliquot_tag': 'ALQ_58c34af9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01217.RNA-Seq.genomic.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076500009 660e8d0b-a1a0-425f-9ac5-c494c4411357.rna_seq.genomic.gdc_realn.bam 9019200004 BAM genomic harmonized CPTAC3 b1df5724-17ef-4ad4-a435-fb0da4490f3f 64ee042fba7aa2eaee7e31abe27991c0 { 'aliquot_tag': 'ALQ_58c34af9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01217.RNA-Seq.R1_L006.T C3N-01217 UCEC RNA-Seq tumor CPT0076500009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4249514878 FASTQ R1_L006 unaligned CPTAC3 e60a5351-d5bd-4e4c-b9d2-64fcdca999b1 0b81b9fb58f42a4195eb3fa3c52513f6 { 'aliquot_tag': 'ALQ_58c34af9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01217.RNA-Seq.R1_.T C3N-01217 UCEC RNA-Seq tumor CPT0076540001 20210714_P1_B11_WB7988_plate1_S23_R1_001.fastq.gz 4635119896 FASTQ R1_ unaligned CPTAC3 9be9f41f-f36b-4e64-ba7f-5bfcb46c5acf 82016f40a6af85be40ae7aa95506f568 { 'aliquot_tag': 'ALQ_a398640b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01217.RNA-Seq.R2_L006.T C3N-01217 UCEC RNA-Seq tumor CPT0076500009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4641396122 FASTQ R2_L006 unaligned CPTAC3 03100748-7dc8-4f11-a46f-9153d3769556 5a512a3a052cc8c74fbd51e7966f8d87 { 'aliquot_tag': 'ALQ_58c34af9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01217.RNA-Seq.R2_.T C3N-01217 UCEC RNA-Seq tumor CPT0076540001 20210714_P1_B11_WB7988_plate1_S23_R2_001.fastq.gz 4810551716 FASTQ R2_ unaligned CPTAC3 fb2d686d-02db-40c0-a5f7-3d40c2c583db 7f37c396378fbc049bc1595d5b887b94 { 'aliquot_tag': 'ALQ_a398640b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01217.RNA-Seq.chimeric.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076540001 b913a837-f444-40e4-a293-d10c2aee07c8.rna_seq.chimeric.gdc_realn.bam 120374506 BAM chimeric harmonized CPTAC3 723eaea1-7a5c-482a-8bd0-1e4c60b991f5 9b3a830d235f8198e2aa554eb975ca1b { 'aliquot_tag': 'ALQ_a398640b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01217.RNA-Seq.genomic.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076500009 660e8d0b-a1a0-425f-9ac5-c494c4411357.rna_seq.genomic.gdc_realn.bam 9019200004 BAM genomic harmonized CPTAC3 0e10f8c0-0a6c-4329-acdc-63cd7e50f1d5 64ee042fba7aa2eaee7e31abe27991c0 { 'aliquot_tag': 'ALQ_58c34af9', 'gdc_sample_type': 'Primary Tumor' } +C3N-01217.RNA-Seq.genomic.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076540001 b913a837-f444-40e4-a293-d10c2aee07c8.rna_seq.genomic.gdc_realn.bam 8928089303 BAM genomic harmonized CPTAC3 12792da2-b4dc-4b37-98f1-e7b5614f22f7 8bf008c2649a33fff09eb84d700dc533 { 'aliquot_tag': 'ALQ_a398640b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01217.RNA-Seq.R1_L006.T C3N-01217 UCEC RNA-Seq tumor CPT0076500009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4249514878 FASTQ R1_L006 unaligned CPTAC3 e60a5351-d5bd-4e4c-b9d2-64fcdca999b1 0b81b9fb58f42a4195eb3fa3c52513f6 { 'aliquot_tag': 'ALQ_58c34af9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01217.RNA-Seq.R2_L006.T C3N-01217 UCEC RNA-Seq tumor CPT0076500009 170906_UNC32-K00270_0058_BHLJ7FBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4641396122 FASTQ R2_L006 unaligned CPTAC3 03100748-7dc8-4f11-a46f-9153d3769556 5a512a3a052cc8c74fbd51e7966f8d87 { 'aliquot_tag': 'ALQ_58c34af9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01217.RNA-Seq.T C3N-01217 UCEC RNA-Seq tumor CPT0076540001 20210714_P1_B11_WB7988_plate1_S23_R1_001.fastq.gz 4635119896 FASTQ unaligned CPTAC3 9be9f41f-f36b-4e64-ba7f-5bfcb46c5acf 82016f40a6af85be40ae7aa95506f568 +C3N-01217.RNA-Seq.T C3N-01217 UCEC RNA-Seq tumor CPT0076540001 20210714_P1_B11_WB7988_plate1_S23_R2_001.fastq.gz 4810551716 FASTQ unaligned CPTAC3 fb2d686d-02db-40c0-a5f7-3d40c2c583db 7f37c396378fbc049bc1595d5b887b94 C3N-01217.RNA-Seq.transcriptome.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076500009 660e8d0b-a1a0-425f-9ac5-c494c4411357.rna_seq.transcriptome.gdc_realn.bam 10166859106 BAM transcriptome harmonized CPTAC3 77fc49f3-8a9e-433b-ad4c-541fcb01356e 9d4ae872385c680422fdd5f609e186fe { 'aliquot_tag': 'ALQ_58c34af9', 'gdc_sample_type': 'Primary Tumor' } +C3N-01217.RNA-Seq.transcriptome.T.hg38 C3N-01217 UCEC RNA-Seq tumor CPT0076540001 b913a837-f444-40e4-a293-d10c2aee07c8.rna_seq.transcriptome.gdc_realn.bam 4656619976 BAM transcriptome harmonized CPTAC3 5f4348d3-1c02-4f98-af28-afefda52d031 5223eeed915fbc3feed7a5a9d4000322 { 'aliquot_tag': 'ALQ_a398640b', 'gdc_sample_type': 'Primary Tumor' } C3N-01217.WGS.N C3N-01217 UCEC WGS blood_normal CPT0076580002 CPT0076580002.WholeGenome.RP-1303.bam 70065926888 BAM aligned CPTAC3 651f0870-292f-4f49-9774-cf1589860087 78af5824dae265f3aedc3c1917ccc7d0 { 'aliquot_tag': 'ALQ_ff61d8b0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01217.WGS.N.hg38 C3N-01217 UCEC WGS blood_normal CPT0076580002 b198fef8-363e-4231-97b0-2b31b0f928fa_gdc_realn.bam 106812640997 BAM harmonized CPTAC3 1a91f81d-f6e4-4ce3-9d38-0ab56f84767b 0d40daafad8439fd37ad72b871ac4821 { 'aliquot_tag': 'ALQ_ff61d8b0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01217.WGS.T C3N-01217 UCEC WGS tumor CPT0076500006 CPT0076500006.WholeGenome.RP-1303.bam 65512228992 BAM aligned CPTAC3 27552a72-0d2c-4307-aefc-1cd193436953 bfb646c4720be88e51408ec4abc1b85e { 'aliquot_tag': 'ALQ_c87c5768', 'gdc_sample_type': 'Primary Tumor' } @@ -24846,12 +26752,15 @@ C3N-01219.MethArray.Red.T C3N-01219 UCEC Methylation Array tumor CPT0076160006 2 C3N-01219.miRNA-Seq.T C3N-01219 UCEC miRNA-Seq tumor CPT0076160009 181119_UNC31-K00269_0165_AH27WCBBXY_ATGAGC_S2_L005_R1_001.unaln.bam 253861019 BAM unaligned CPTAC3 195a1013-613f-465d-a1bc-86e2bae3900b c473ede6c8347a2210fd12261cf3997a { 'aliquot_tag': 'ALQ_4c12fd4f', 'gdc_sample_type': 'Primary Tumor' } C3N-01219.miRNA-Seq.T.hg38 C3N-01219 UCEC miRNA-Seq tumor CPT0076160009 15ca3a99-1a54-49be-80ec-06b9d7ffed47_mirnaseq_gdc_realn.bam 280432556 BAM harmonized CPTAC3 9311e783-374f-48be-a303-eb1c80bbd8ff 60c7797a7c649161e42547c65822373e { 'aliquot_tag': 'ALQ_4c12fd4f', 'gdc_sample_type': 'Primary Tumor' } C3N-01219.RNA-Seq.chimeric.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076160009 6d2bae6e-ed3e-4a06-b170-50c518fbb8a0.rna_seq.chimeric.gdc_realn.bam 52360346 BAM chimeric harmonized CPTAC3 2f2ae3e8-b69a-4920-8f25-8091d6bbe148 7711bd763de3617aae5552376fb03664 { 'aliquot_tag': 'ALQ_4c12fd4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01219.RNA-Seq.genomic.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076160009 6d2bae6e-ed3e-4a06-b170-50c518fbb8a0.rna_seq.genomic.gdc_realn.bam 9143110736 BAM genomic harmonized CPTAC3 1395baf9-1e06-461b-9e39-c4c463236398 2d3fd611f57e547b82412203222a1a9b { 'aliquot_tag': 'ALQ_4c12fd4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01219.RNA-Seq.R1_L006.T C3N-01219 UCEC RNA-Seq tumor CPT0076160009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACAGTG_S23_L006_R1_001.fastq.gz 3838496765 FASTQ R1_L006 unaligned CPTAC3 e20212d2-8826-470e-8ea9-fd482194e637 1f509d18ccd2717c51095d99ac0c7ab2 { 'aliquot_tag': 'ALQ_4c12fd4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01219.RNA-Seq.R1_.T C3N-01219 UCEC RNA-Seq tumor CPT0076200001 20210714_P1_E3_WB7988_plate1_S51_R1_001.fastq.gz 6172623004 FASTQ R1_ unaligned CPTAC3 d4e51395-c442-420b-aa6f-d4285f83629b 171ae05520b7d727a9000d5ae6caea52 { 'aliquot_tag': 'ALQ_4b1df273', 'gdc_sample_type': 'Primary Tumor' } -C3N-01219.RNA-Seq.R2_L006.T C3N-01219 UCEC RNA-Seq tumor CPT0076160009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACAGTG_S23_L006_R2_001.fastq.gz 4181958224 FASTQ R2_L006 unaligned CPTAC3 4411b385-dfc9-42a7-b200-a2ef23950c1e ade1a0d6b77eef02fd86fa00ff69f345 { 'aliquot_tag': 'ALQ_4c12fd4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01219.RNA-Seq.R2_.T C3N-01219 UCEC RNA-Seq tumor CPT0076200001 20210714_P1_E3_WB7988_plate1_S51_R2_001.fastq.gz 6441627708 FASTQ R2_ unaligned CPTAC3 5ddc4cf7-51f3-4c6d-815d-5fa0b7e8135b 01be7b610741685fcfa5ec8223753db9 { 'aliquot_tag': 'ALQ_4b1df273', 'gdc_sample_type': 'Primary Tumor' } +C3N-01219.RNA-Seq.chimeric.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076200001 90d72528-edc9-4fa5-b961-8406272ce31f.rna_seq.chimeric.gdc_realn.bam 182580929 BAM chimeric harmonized CPTAC3 556bdec9-2c65-402c-a788-ffd86001f5da 4cda510e38968cdf425fe85b9fc3eed3 { 'aliquot_tag': 'ALQ_4b1df273', 'gdc_sample_type': 'Primary Tumor' } +C3N-01219.RNA-Seq.genomic.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076160009 6d2bae6e-ed3e-4a06-b170-50c518fbb8a0.rna_seq.genomic.gdc_realn.bam 9143110736 BAM genomic harmonized CPTAC3 ce386d5a-e6b1-4f5b-858b-7c59dd627851 2d3fd611f57e547b82412203222a1a9b { 'aliquot_tag': 'ALQ_4c12fd4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01219.RNA-Seq.genomic.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076200001 90d72528-edc9-4fa5-b961-8406272ce31f.rna_seq.genomic.gdc_realn.bam 9964225183 BAM genomic harmonized CPTAC3 96901bf6-cba6-41ad-a569-158c00c8f2bc 9b67157ca0f1ab36eec0518faaced4ab { 'aliquot_tag': 'ALQ_4b1df273', 'gdc_sample_type': 'Primary Tumor' } +C3N-01219.RNA-Seq.R1_L006.T C3N-01219 UCEC RNA-Seq tumor CPT0076160009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACAGTG_S23_L006_R1_001.fastq.gz 3838496765 FASTQ R1_L006 unaligned CPTAC3 e20212d2-8826-470e-8ea9-fd482194e637 1f509d18ccd2717c51095d99ac0c7ab2 { 'aliquot_tag': 'ALQ_4c12fd4f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01219.RNA-Seq.R2_L006.T C3N-01219 UCEC RNA-Seq tumor CPT0076160009 170906_UNC32-K00270_0058_BHLJ7FBBXX_ACAGTG_S23_L006_R2_001.fastq.gz 4181958224 FASTQ R2_L006 unaligned CPTAC3 4411b385-dfc9-42a7-b200-a2ef23950c1e ade1a0d6b77eef02fd86fa00ff69f345 { 'aliquot_tag': 'ALQ_4c12fd4f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01219.RNA-Seq.T C3N-01219 UCEC RNA-Seq tumor CPT0076200001 20210714_P1_E3_WB7988_plate1_S51_R1_001.fastq.gz 6172623004 FASTQ unaligned CPTAC3 d4e51395-c442-420b-aa6f-d4285f83629b 171ae05520b7d727a9000d5ae6caea52 +C3N-01219.RNA-Seq.T C3N-01219 UCEC RNA-Seq tumor CPT0076200001 20210714_P1_E3_WB7988_plate1_S51_R2_001.fastq.gz 6441627708 FASTQ unaligned CPTAC3 5ddc4cf7-51f3-4c6d-815d-5fa0b7e8135b 01be7b610741685fcfa5ec8223753db9 C3N-01219.RNA-Seq.transcriptome.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076160009 6d2bae6e-ed3e-4a06-b170-50c518fbb8a0.rna_seq.transcriptome.gdc_realn.bam 8499939236 BAM transcriptome harmonized CPTAC3 25937390-2979-4ab5-b71c-f9f8ec25c342 5be974951beaab1200be105bad88db9d { 'aliquot_tag': 'ALQ_4c12fd4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01219.RNA-Seq.transcriptome.T.hg38 C3N-01219 UCEC RNA-Seq tumor CPT0076200001 90d72528-edc9-4fa5-b961-8406272ce31f.rna_seq.transcriptome.gdc_realn.bam 6071601585 BAM transcriptome harmonized CPTAC3 fd4b583b-e728-46a9-86f3-1294a00230c9 5fd2a01766793944ac2322db70e19db6 { 'aliquot_tag': 'ALQ_4b1df273', 'gdc_sample_type': 'Primary Tumor' } C3N-01219.WGS.N C3N-01219 UCEC WGS blood_normal CPT0076220002 CPT0076220002.WholeGenome.RP-1303.bam 68890986672 BAM aligned CPTAC3 ff01b4dc-a0e5-4ab4-adfd-104a1b16139a 072d43ef4de636c480dea17c2b75fad0 { 'aliquot_tag': 'ALQ_a8d4f0a9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01219.WGS.N.hg38 C3N-01219 UCEC WGS blood_normal CPT0076220002 d4c44cff-6bfd-46e0-a542-426345f7afff_gdc_realn.bam 104941785202 BAM harmonized CPTAC3 130cc23b-3c75-406e-b2e3-6c762c8dcfc7 dc8e9ce8d9e3115458493a9ffe2d07df { 'aliquot_tag': 'ALQ_a8d4f0a9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01219.WGS.T C3N-01219 UCEC WGS tumor CPT0076160006 CPT0076160006.WholeGenome.RP-1303.bam 63314749909 BAM aligned CPTAC3 d4dbe264-66d3-4ef8-a990-c4c105e2d4e7 af77cc27a08da47d864aa808a5f60c1b { 'aliquot_tag': 'ALQ_dcade0de', 'gdc_sample_type': 'Primary Tumor' } @@ -24863,16 +26772,16 @@ C3N-01219.WXS.T.hg38 C3N-01219 UCEC WXS tumor CPT0076160006 14e343cd-1aff-4e8b-8 C3N-01220.DUP_7b1a0f24.miRNA-Seq.T C3N-01220 CCRCC miRNA-Seq tumor CPT0076340009 200526_UNC32-K00270_0248_BHH7WFBBXY_ATGAGC_S1_L004_R1_001.unaln.bam 277168649 BAM unaligned CPTAC3 3381f99f-e5d8-4a18-8b18-c3ab6a019635 44402ddeb33833b1fb9011429f480bb9 { 'aliquot_tag': 'DUP_7b1a0f24', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01220.DUP_7b1a0f24.miRNA-Seq.T.hg38 C3N-01220 CCRCC miRNA-Seq tumor CPT0076340009 e20d7b23-ab65-4737-91a5-d2f631dc8bd2_mirnaseq_gdc_realn.bam 302755705 BAM harmonized CPTAC3 e0710ed1-15be-43b2-b3c9-a16667cef543 0cd1c9db4f3a92bc7d75634fa21de45a { 'aliquot_tag': 'DUP_7b1a0f24', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01220.DUP_7b1a0f24.RNA-Seq.chimeric.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 c23ac12a-a38e-44fc-984e-c9d717baf176.rna_seq.chimeric.gdc_realn.bam 184757655 BAM chimeric harmonized CPTAC3 40485767-980a-442e-b56f-f17c223fd43f 0b3c670260a2c33fc293c7b074833ff7 { 'aliquot_tag': 'DUP_7b1a0f24', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01220.DUP_7b1a0f24.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 c23ac12a-a38e-44fc-984e-c9d717baf176.rna_seq.genomic.gdc_realn.bam 7827754877 BAM genomic harmonized CPTAC3 e999e0ba-c1d8-4917-b04d-90d413d78406 4169fb3736ec33d194f33b32b3ae138b { 'aliquot_tag': 'DUP_7b1a0f24', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01220.DUP_7b1a0f24.RNA-Seq.R1_L002.T C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 200519_UNC31-K00269_0279_AHH5VTBBXY_GTCGGAGC-GGTTATAA_S7_L002_R1_001.fastq.gz 3636707658 FASTQ R1_L002 unaligned CPTAC3 3e813950-7da9-4dd9-a4a6-fde17a82a0dd a390a574382f44f8f9dd3759bb381a5a { 'aliquot_tag': 'DUP_7b1a0f24', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01220.DUP_7b1a0f24.RNA-Seq.R2_L002.T C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 200519_UNC31-K00269_0279_AHH5VTBBXY_GTCGGAGC-GGTTATAA_S7_L002_R2_001.fastq.gz 4290988096 FASTQ R2_L002 unaligned CPTAC3 fa96db8d-5e7b-4a03-96c7-9ee08a3d7179 74ea2a1be4c72bfd36034ac478440e88 { 'aliquot_tag': 'DUP_7b1a0f24', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01220.DUP_7b1a0f24.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 c23ac12a-a38e-44fc-984e-c9d717baf176.rna_seq.genomic.gdc_realn.bam 7827754877 BAM genomic harmonized CPTAC3 9b5a28ae-42f0-4289-b20d-cbb92b4430d6 4169fb3736ec33d194f33b32b3ae138b { 'aliquot_tag': 'DUP_7b1a0f24', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01220.DUP_7b1a0f24.RNA-Seq.R1_L002.T C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 200519_UNC31-K00269_0279_AHH5VTBBXY_GTCGGAGC-GGTTATAA_S7_L002_R1_001.fastq.gz 3636707658 FASTQ R1_L002 unaligned CPTAC3 3e813950-7da9-4dd9-a4a6-fde17a82a0dd a390a574382f44f8f9dd3759bb381a5a { 'aliquot_tag': 'DUP_7b1a0f24', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3N-01220.DUP_7b1a0f24.RNA-Seq.R2_L002.T C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 200519_UNC31-K00269_0279_AHH5VTBBXY_GTCGGAGC-GGTTATAA_S7_L002_R2_001.fastq.gz 4290988096 FASTQ R2_L002 unaligned CPTAC3 fa96db8d-5e7b-4a03-96c7-9ee08a3d7179 74ea2a1be4c72bfd36034ac478440e88 { 'aliquot_tag': 'DUP_7b1a0f24', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3N-01220.DUP_7b1a0f24.RNA-Seq.transcriptome.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076340009 c23ac12a-a38e-44fc-984e-c9d717baf176.rna_seq.transcriptome.gdc_realn.bam 11588006443 BAM transcriptome harmonized CPTAC3 054b59d9-3afa-40ff-a9a5-b3d96a618bfb 7fda625d50afeb991eb0966b117a1959 { 'aliquot_tag': 'DUP_7b1a0f24', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01220.DUP_93f0b778.miRNA-Seq.T C3N-01220 CCRCC miRNA-Seq tumor CPT0076320014 200526_UNC32-K00270_0248_BHH7WFBBXY_GACGAC_S12_L001_R1_001.unaln.bam 271185910 BAM unaligned CPTAC3 2dbed1b3-763d-435f-8fb9-917bf13c1a56 94763f7149c7a3fb5f6eea5f3d960cad { 'aliquot_tag': 'DUP_93f0b778', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01220.DUP_93f0b778.miRNA-Seq.T.hg38 C3N-01220 CCRCC miRNA-Seq tumor CPT0076320014 1fe5e835-6ea6-43ef-bc3c-baf6df9ca739_mirnaseq_gdc_realn.bam 291801924 BAM harmonized CPTAC3 e4b5d267-a4f1-45e6-9ef6-b3fbc1b9e06e 8bc2041b037efba2eb5d107b4ee0a0da { 'aliquot_tag': 'DUP_93f0b778', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01220.DUP_93f0b778.RNA-Seq.chimeric.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 df59eb28-e6ce-4223-a50e-94078d6d2988.rna_seq.chimeric.gdc_realn.bam 35029284 BAM chimeric harmonized CPTAC3 e2056d2c-67ab-4dd5-9a0e-185d33850a26 83c0e22b9ce547dc6a3bda621cbea9b9 { 'aliquot_tag': 'DUP_93f0b778', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01220.DUP_93f0b778.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 df59eb28-e6ce-4223-a50e-94078d6d2988.rna_seq.genomic.gdc_realn.bam 7402048823 BAM genomic harmonized CPTAC3 3989a9cb-37c1-455e-80b3-11e7573211c9 51e652596679aa161365ad9e2a147970 { 'aliquot_tag': 'DUP_93f0b778', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01220.DUP_93f0b778.RNA-Seq.R1_L001.T C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 200608_UNC31-K00269_0281_AHH5NFBBXY_TATCGCAC-CTTAGTGT_S1_L001_R1_001.fastq.gz 3407315825 FASTQ R1_L001 unaligned CPTAC3 390a79d2-0957-45b4-af79-059f55e8865a 305d7fa3b6912a2d7105ea81ff787e3c { 'aliquot_tag': 'DUP_93f0b778', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01220.DUP_93f0b778.RNA-Seq.R2_L001.T C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 200608_UNC31-K00269_0281_AHH5NFBBXY_TATCGCAC-CTTAGTGT_S1_L001_R2_001.fastq.gz 4201860940 FASTQ R2_L001 unaligned CPTAC3 c9779aff-d269-4ba8-9abf-801cc26e10f7 6903c4e5c31f6edb65a1b17c2957e7cd { 'aliquot_tag': 'DUP_93f0b778', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01220.DUP_93f0b778.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 df59eb28-e6ce-4223-a50e-94078d6d2988.rna_seq.genomic.gdc_realn.bam 7402048823 BAM genomic harmonized CPTAC3 f1322c99-6951-45af-89bc-9a2471f3704c 51e652596679aa161365ad9e2a147970 { 'aliquot_tag': 'DUP_93f0b778', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01220.DUP_93f0b778.RNA-Seq.R1_L001.T C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 200608_UNC31-K00269_0281_AHH5NFBBXY_TATCGCAC-CTTAGTGT_S1_L001_R1_001.fastq.gz 3407315825 FASTQ R1_L001 unaligned CPTAC3 390a79d2-0957-45b4-af79-059f55e8865a 305d7fa3b6912a2d7105ea81ff787e3c { 'aliquot_tag': 'DUP_93f0b778', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L001' } +C3N-01220.DUP_93f0b778.RNA-Seq.R2_L001.T C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 200608_UNC31-K00269_0281_AHH5NFBBXY_TATCGCAC-CTTAGTGT_S1_L001_R2_001.fastq.gz 4201860940 FASTQ R2_L001 unaligned CPTAC3 c9779aff-d269-4ba8-9abf-801cc26e10f7 6903c4e5c31f6edb65a1b17c2957e7cd { 'aliquot_tag': 'DUP_93f0b778', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L001' } C3N-01220.DUP_93f0b778.RNA-Seq.transcriptome.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076320014 df59eb28-e6ce-4223-a50e-94078d6d2988.rna_seq.transcriptome.gdc_realn.bam 11057802573 BAM transcriptome harmonized CPTAC3 a535009a-eb3c-4577-bf61-882642ea0006 ed0d8ca36ce97297768c9b35298ec2a1 { 'aliquot_tag': 'DUP_93f0b778', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01220.DUP_e39a43f7.MethArray.Green.T C3N-01220 CCRCC Methylation Array tumor CPT0076320011 204367490043_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 6fa99b43-1023-48df-a9fa-68d9c30e306b 023b4f13e38a1c937368bd754ebe9c78 { 'aliquot_tag': 'DUP_e39a43f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01220.DUP_e39a43f7.MethArray.Red.T C3N-01220 CCRCC Methylation Array tumor CPT0076320011 204367490043_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 489dd2a2-90d6-4046-b6f1-93332ad3346e 8e8342010cc7c0e65dcd159b972be692 { 'aliquot_tag': 'DUP_e39a43f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -24896,12 +26805,12 @@ C3N-01220.miRNA-Seq.T C3N-01220 CCRCC miRNA-Seq tumor CPT0076330008 181113_UNC31 C3N-01220.miRNA-Seq.T.hg38 C3N-01220 CCRCC miRNA-Seq tumor CPT0076330008 fd755eae-52b1-40df-99b9-d822ac89dfb8_mirnaseq_gdc_realn.bam 250786542 BAM harmonized CPTAC3 fe2aa0a8-181c-4151-b4e1-868f7f600da4 c9fa3fbe8db87377f287748eaf387ced { 'aliquot_tag': 'ALQ_be3de3a2', 'gdc_sample_type': 'Primary Tumor' } C3N-01220.RNA-Seq.chimeric.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 edf3ef73-e912-4b96-9b17-1d7282958d73.rna_seq.chimeric.gdc_realn.bam 65429902 BAM chimeric harmonized CPTAC3 85bcf5ad-f363-4194-9ebc-44af6a50df0d c494e4dacf8376f371f04fc28f72a245 { 'aliquot_tag': 'ALQ_d6c53b05', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01220.RNA-Seq.chimeric.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 4552ee76-adc4-45a4-adc8-a3abeb2206c5.rna_seq.chimeric.gdc_realn.bam 50792236 BAM chimeric harmonized CPTAC3 3cc8320d-5bd5-41dd-b658-50d754c1b5a5 54f7088dcc9024df6e513a066de74d62 { 'aliquot_tag': 'ALQ_be3de3a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01220.RNA-Seq.genomic.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 edf3ef73-e912-4b96-9b17-1d7282958d73.rna_seq.genomic.gdc_realn.bam 9061904295 BAM genomic harmonized CPTAC3 f669a977-f9c0-464d-b7f9-2e491e2948c5 812512d01663ad0084846b8a4a1555f8 { 'aliquot_tag': 'ALQ_d6c53b05', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01220.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 4552ee76-adc4-45a4-adc8-a3abeb2206c5.rna_seq.genomic.gdc_realn.bam 7249853799 BAM genomic harmonized CPTAC3 7cf9da96-b3d1-4d77-9008-6c20ae724042 87ea62c7e1c85dd3a1c6e5e7507106e5 { 'aliquot_tag': 'ALQ_be3de3a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01220.RNA-Seq.R1_L003.A C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTCCGC_S12_L003_R1_001.fastq.gz 4547071907 FASTQ R1_L003 unaligned CPTAC3 6871b6fe-05b3-4de6-ae72-4ff2312f0383 39efdd2b594511cc0dc6d4d49cae5664 { 'aliquot_tag': 'ALQ_d6c53b05', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01220.RNA-Seq.R1_L008.T C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L008_R1_001.fastq.gz 3479993988 FASTQ R1_L008 unaligned CPTAC3 a7721c68-237b-487d-8cff-3c5467cee627 fc23689816af5e309ad558f490e5d9d1 { 'aliquot_tag': 'ALQ_be3de3a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01220.RNA-Seq.R2_L003.A C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTCCGC_S12_L003_R2_001.fastq.gz 4928211983 FASTQ R2_L003 unaligned CPTAC3 445899d0-1c6f-41be-aded-b4565954d913 a04667eb2f9ca6ae987aa66b2b324664 { 'aliquot_tag': 'ALQ_d6c53b05', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01220.RNA-Seq.R2_L008.T C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L008_R2_001.fastq.gz 3752516932 FASTQ R2_L008 unaligned CPTAC3 302d01d4-74bd-4971-8955-86e606e3aad3 3c88c225a2f4184e27d4aaed740f047a { 'aliquot_tag': 'ALQ_be3de3a2', 'gdc_sample_type': 'Primary Tumor' } +C3N-01220.RNA-Seq.genomic.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 edf3ef73-e912-4b96-9b17-1d7282958d73.rna_seq.genomic.gdc_realn.bam 9061904295 BAM genomic harmonized CPTAC3 39de6d82-1585-4514-9038-42d88946f1c3 812512d01663ad0084846b8a4a1555f8 { 'aliquot_tag': 'ALQ_d6c53b05', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01220.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 4552ee76-adc4-45a4-adc8-a3abeb2206c5.rna_seq.genomic.gdc_realn.bam 7249853799 BAM genomic harmonized CPTAC3 21d72bba-6d17-40c5-8be7-c9ae34d954c9 87ea62c7e1c85dd3a1c6e5e7507106e5 { 'aliquot_tag': 'ALQ_be3de3a2', 'gdc_sample_type': 'Primary Tumor' } +C3N-01220.RNA-Seq.R1_L003.A C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTCCGC_S12_L003_R1_001.fastq.gz 4547071907 FASTQ R1_L003 unaligned CPTAC3 6871b6fe-05b3-4de6-ae72-4ff2312f0383 39efdd2b594511cc0dc6d4d49cae5664 { 'aliquot_tag': 'ALQ_d6c53b05', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01220.RNA-Seq.R1_L008.T C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L008_R1_001.fastq.gz 3479993988 FASTQ R1_L008 unaligned CPTAC3 a7721c68-237b-487d-8cff-3c5467cee627 fc23689816af5e309ad558f490e5d9d1 { 'aliquot_tag': 'ALQ_be3de3a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01220.RNA-Seq.R2_L003.A C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTCCGC_S12_L003_R2_001.fastq.gz 4928211983 FASTQ R2_L003 unaligned CPTAC3 445899d0-1c6f-41be-aded-b4565954d913 a04667eb2f9ca6ae987aa66b2b324664 { 'aliquot_tag': 'ALQ_d6c53b05', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-01220.RNA-Seq.R2_L008.T C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L008_R2_001.fastq.gz 3752516932 FASTQ R2_L008 unaligned CPTAC3 302d01d4-74bd-4971-8955-86e606e3aad3 3c88c225a2f4184e27d4aaed740f047a { 'aliquot_tag': 'ALQ_be3de3a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01220.RNA-Seq.transcriptome.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal CPT0076350006 edf3ef73-e912-4b96-9b17-1d7282958d73.rna_seq.transcriptome.gdc_realn.bam 12459867482 BAM transcriptome harmonized CPTAC3 00257c9f-1dd6-4f80-86d0-a8351a9c2c21 32a8476d7067747fb7e3d3810bf9daaf { 'aliquot_tag': 'ALQ_d6c53b05', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01220.RNA-Seq.transcriptome.T.hg38 C3N-01220 CCRCC RNA-Seq tumor CPT0076330008 4552ee76-adc4-45a4-adc8-a3abeb2206c5.rna_seq.transcriptome.gdc_realn.bam 10744548765 BAM transcriptome harmonized CPTAC3 4e70c764-33c3-44e6-a4cc-77d68ec2ef6e e7a6c11a99d9cc4a1637ba418e064b9e { 'aliquot_tag': 'ALQ_be3de3a2', 'gdc_sample_type': 'Primary Tumor' } C3N-01220.WGS.A C3N-01220 CCRCC WGS tissue_normal CPT0076350009 CPT0076350009.WholeGenome.RP-1303.bam 54176269584 BAM aligned CPTAC3 d7f45be8-fbd8-4f67-8c56-d1a3705eaf2a 84f6f1d7048e5af4dbc7c145637dd785 { 'aliquot_tag': 'ALQ_467a2694', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -24919,9 +26828,9 @@ C3N-01220.WXS.T.hg38 C3N-01220 CCRCC WXS tumor CPT0076330006 5e08ba1d-7269-475b- C3N-01261.DUP_17775369.miRNA-Seq.T C3N-01261 CCRCC miRNA-Seq tumor CPT0077470006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L004_R1_001.unaln.bam 323159596 BAM unaligned CPTAC3 b870a25b-6664-4383-83b2-22602e6e6ba6 8c832c054bf1c6c1f9afb7e2ad58b766 { 'aliquot_tag': 'DUP_17775369', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01261.DUP_17775369.miRNA-Seq.T.hg38 C3N-01261 CCRCC miRNA-Seq tumor CPT0077470006 b74acaa4-369f-4a1b-847e-a293ceaaa880_mirnaseq_gdc_realn.bam 358343624 BAM harmonized CPTAC3 a8732aef-a18e-4027-af82-72ecd309b025 28483c36ca58dc7f8f3533dc6211792d { 'aliquot_tag': 'DUP_17775369', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01261.DUP_17775369.RNA-Seq.chimeric.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 5e1c9d83-2000-491f-8540-7e7471bde617.rna_seq.chimeric.gdc_realn.bam 223401662 BAM chimeric harmonized CPTAC3 320ccd76-7a11-4833-aae9-935b6550fa76 fda7578afbc2318e0ea87a414eb400d4 { 'aliquot_tag': 'DUP_17775369', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01261.DUP_17775369.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 5e1c9d83-2000-491f-8540-7e7471bde617.rna_seq.genomic.gdc_realn.bam 8769293593 BAM genomic harmonized CPTAC3 fa0a298e-c79f-4a25-9a5f-652dd4affff0 04aa3168fd05b233f30bd7043a5f867b { 'aliquot_tag': 'DUP_17775369', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01261.DUP_17775369.RNA-Seq.R1_L003.T C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 200519_UNC31-K00269_0279_AHH5VTBBXY_TTACAGGA-TGACAAGC_S12_L003_R1_001.fastq.gz 4232641871 FASTQ R1_L003 unaligned CPTAC3 c497a706-0042-4a1d-8fa7-46e0858543a2 2a07651d2dc0c765acd6392e040d67df { 'aliquot_tag': 'DUP_17775369', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01261.DUP_17775369.RNA-Seq.R2_L003.T C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 200519_UNC31-K00269_0279_AHH5VTBBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 4931865743 FASTQ R2_L003 unaligned CPTAC3 175b3614-d9fb-4a4f-be79-911094a20cce abefeaf8711774e64dc6fabd6495b450 { 'aliquot_tag': 'DUP_17775369', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01261.DUP_17775369.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 5e1c9d83-2000-491f-8540-7e7471bde617.rna_seq.genomic.gdc_realn.bam 8769293593 BAM genomic harmonized CPTAC3 a36e8c9f-ff1f-4757-97cb-a06bdead44d6 04aa3168fd05b233f30bd7043a5f867b { 'aliquot_tag': 'DUP_17775369', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01261.DUP_17775369.RNA-Seq.R1_L003.T C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 200519_UNC31-K00269_0279_AHH5VTBBXY_TTACAGGA-TGACAAGC_S12_L003_R1_001.fastq.gz 4232641871 FASTQ R1_L003 unaligned CPTAC3 c497a706-0042-4a1d-8fa7-46e0858543a2 2a07651d2dc0c765acd6392e040d67df { 'aliquot_tag': 'DUP_17775369', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L003' } +C3N-01261.DUP_17775369.RNA-Seq.R2_L003.T C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 200519_UNC31-K00269_0279_AHH5VTBBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 4931865743 FASTQ R2_L003 unaligned CPTAC3 175b3614-d9fb-4a4f-be79-911094a20cce abefeaf8711774e64dc6fabd6495b450 { 'aliquot_tag': 'DUP_17775369', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L003' } C3N-01261.DUP_17775369.RNA-Seq.transcriptome.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077470006 5e1c9d83-2000-491f-8540-7e7471bde617.rna_seq.transcriptome.gdc_realn.bam 11292536720 BAM transcriptome harmonized CPTAC3 94157681-63ac-4e2e-a995-1d25b280a683 6433a2bdd21332306d0ba751b7f4f3c9 { 'aliquot_tag': 'DUP_17775369', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01261.DUP_598d929.MethArray.Green.T C3N-01261 CCRCC Methylation Array tumor CPT0077480009 204367490029_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 0b467d26-740e-4b5c-abe6-c651bf2afc21 27bb8b7e79be444be6039ddd74156215 { 'aliquot_tag': 'DUP_598d929', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01261.DUP_598d929.MethArray.Red.T C3N-01261 CCRCC Methylation Array tumor CPT0077480009 204367490029_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 465642a9-6f97-42f3-b00e-7d76d4d795f9 3cdec7bc7b24164409be9889e2962f4e { 'aliquot_tag': 'DUP_598d929', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -24938,9 +26847,9 @@ C3N-01261.DUP_87c84ef8.WXS.T.hg38 C3N-01261 CCRCC WXS tumor CPT0077470009 42e071 C3N-01261.DUP_9527c4b8.miRNA-Seq.T C3N-01261 CCRCC miRNA-Seq tumor CPT0077480006 200526_UNC32-K00270_0248_BHH7WFBBXY_CACGAT_S25_L004_R1_001.unaln.bam 393524491 BAM unaligned CPTAC3 a5f1dfb6-27de-4023-b9b9-8c1a9a9fb7a9 a9d6c6bfa2a1782284665fcd6c1527b4 { 'aliquot_tag': 'DUP_9527c4b8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01261.DUP_9527c4b8.miRNA-Seq.T.hg38 C3N-01261 CCRCC miRNA-Seq tumor CPT0077480006 a8df5a9e-3d35-497b-9261-82f1953c4080_mirnaseq_gdc_realn.bam 436046741 BAM harmonized CPTAC3 1f7a67fe-5434-4cef-b99a-92bff6d51844 634007af42b16681e72b6be3760684a0 { 'aliquot_tag': 'DUP_9527c4b8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01261.DUP_9527c4b8.RNA-Seq.chimeric.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 770447a5-6def-4186-b52a-12d6bfff1617.rna_seq.chimeric.gdc_realn.bam 257449426 BAM chimeric harmonized CPTAC3 8ee9bd34-2b1c-4801-a7d2-0224992418b5 e5fecf4394a492264545b94c00c54582 { 'aliquot_tag': 'DUP_9527c4b8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01261.DUP_9527c4b8.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 770447a5-6def-4186-b52a-12d6bfff1617.rna_seq.genomic.gdc_realn.bam 7726245895 BAM genomic harmonized CPTAC3 135985bf-7a4b-4ec3-bd56-ebf3ca6849eb 01557b8f1212e6f528b449fa0083275c { 'aliquot_tag': 'DUP_9527c4b8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01261.DUP_9527c4b8.RNA-Seq.R1_L003.T C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGCATTCT-CTAGCTTG_S11_L003_R1_001.fastq.gz 3786784188 FASTQ R1_L003 unaligned CPTAC3 94432a7f-6bc9-476f-b180-6cf3be17d99d bfa5728f0170ff8f0bbaa2a85d71a7b1 { 'aliquot_tag': 'DUP_9527c4b8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01261.DUP_9527c4b8.RNA-Seq.R2_L003.T C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGCATTCT-CTAGCTTG_S11_L003_R2_001.fastq.gz 4209702146 FASTQ R2_L003 unaligned CPTAC3 e84f5faf-e3b4-4324-91d2-699d6fbad519 2cbed543a36f3ec3c301e2f5ced6e5d8 { 'aliquot_tag': 'DUP_9527c4b8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01261.DUP_9527c4b8.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 770447a5-6def-4186-b52a-12d6bfff1617.rna_seq.genomic.gdc_realn.bam 7726245895 BAM genomic harmonized CPTAC3 85ccfaf2-642e-43ff-ad6c-8aa7a5de0d8b 01557b8f1212e6f528b449fa0083275c { 'aliquot_tag': 'DUP_9527c4b8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01261.DUP_9527c4b8.RNA-Seq.R1_L003.T C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGCATTCT-CTAGCTTG_S11_L003_R1_001.fastq.gz 3786784188 FASTQ R1_L003 unaligned CPTAC3 94432a7f-6bc9-476f-b180-6cf3be17d99d bfa5728f0170ff8f0bbaa2a85d71a7b1 { 'aliquot_tag': 'DUP_9527c4b8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L003' } +C3N-01261.DUP_9527c4b8.RNA-Seq.R2_L003.T C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 200519_UNC31-K00269_0279_AHH5VTBBXY_GGCATTCT-CTAGCTTG_S11_L003_R2_001.fastq.gz 4209702146 FASTQ R2_L003 unaligned CPTAC3 e84f5faf-e3b4-4324-91d2-699d6fbad519 2cbed543a36f3ec3c301e2f5ced6e5d8 { 'aliquot_tag': 'DUP_9527c4b8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L003' } C3N-01261.DUP_9527c4b8.RNA-Seq.transcriptome.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077480006 770447a5-6def-4186-b52a-12d6bfff1617.rna_seq.transcriptome.gdc_realn.bam 9416853650 BAM transcriptome harmonized CPTAC3 b77a9835-b214-4b4a-afa9-954b75a173a3 05602b3bd833b2519a930841b7204c30 { 'aliquot_tag': 'DUP_9527c4b8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01261.MethArray.Green.A C3N-01261 CCRCC Methylation Array tissue_normal CPT0077500009 204930640023_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 e24f3118-4b8d-436e-a272-120fe41be4ed 788fb85143a79f5ace6e5c8127a2564a { 'aliquot_tag': 'ALQ_feb4414d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01261.MethArray.Green.T C3N-01261 CCRCC Methylation Array tumor CPT0077490009 202184990059_R03C01_Grn.idat 13676231 IDAT Green NA CPTAC3 d00b0a0c-5332-4fff-8b9d-6a9428b2a35a 7aecaac59c865f47e34f6ea8880c6a06 { 'aliquot_tag': 'ALQ_38f8f099', 'gdc_sample_type': 'Primary Tumor' } @@ -24952,12 +26861,12 @@ C3N-01261.miRNA-Seq.T C3N-01261 CCRCC miRNA-Seq tumor CPT0077490006 181012_UNC32 C3N-01261.miRNA-Seq.T.hg38 C3N-01261 CCRCC miRNA-Seq tumor CPT0077490006 990eeb02-de23-4d83-99df-65b7babfbfa5_mirnaseq_gdc_realn.bam 240657784 BAM harmonized CPTAC3 dec0b9e9-0041-4062-92a8-d52f7e9971ad ac44eb590aaea7cde3ff2b353056be2c { 'aliquot_tag': 'ALQ_a847ed08', 'gdc_sample_type': 'Primary Tumor' } C3N-01261.RNA-Seq.chimeric.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 10e3df3d-6608-4777-afde-88452856d171.rna_seq.chimeric.gdc_realn.bam 75052516 BAM chimeric harmonized CPTAC3 fae1832f-218b-4f30-93c6-5433fe6bbca2 7705a0a298005a9399034dfe2d14c761 { 'aliquot_tag': 'ALQ_6e0b5cdc', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01261.RNA-Seq.chimeric.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 658b66e2-a9ca-4791-b286-97db6816c40c.rna_seq.chimeric.gdc_realn.bam 219526899 BAM chimeric harmonized CPTAC3 fb5b0bdc-f08c-43e8-898f-ab020e8d05bf e018d5238756e98531ba0d839854b8a9 { 'aliquot_tag': 'ALQ_a847ed08', 'gdc_sample_type': 'Primary Tumor' } -C3N-01261.RNA-Seq.genomic.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 10e3df3d-6608-4777-afde-88452856d171.rna_seq.genomic.gdc_realn.bam 6875447975 BAM genomic harmonized CPTAC3 1ecad5dc-9880-46ed-8d69-068d713d4ea2 dd8841b43fbc2d2d490a5c8305733389 { 'aliquot_tag': 'ALQ_6e0b5cdc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01261.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 658b66e2-a9ca-4791-b286-97db6816c40c.rna_seq.genomic.gdc_realn.bam 5702877798 BAM genomic harmonized CPTAC3 0ded6e6a-220b-4e5f-a31a-a2fa6a3d1813 c937007d2a28f744946c8743706cb9db { 'aliquot_tag': 'ALQ_a847ed08', 'gdc_sample_type': 'Primary Tumor' } -C3N-01261.RNA-Seq.R1_L001.T C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L001_R1_001.fastq.gz 3171933083 FASTQ R1_L001 unaligned CPTAC3 5e055bcb-7988-4721-abca-d6ba8ddf2859 aae8d12ccb6e018c19fc5b6828d66128 { 'aliquot_tag': 'ALQ_a847ed08', 'gdc_sample_type': 'Primary Tumor' } -C3N-01261.RNA-Seq.R1_L002.A C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L002_R1_001.fastq.gz 3320794151 FASTQ R1_L002 unaligned CPTAC3 bf23dd02-c938-4b78-855e-fde50768436a 0c9bc6cdee59c3d8328ef0e5675c2428 { 'aliquot_tag': 'ALQ_6e0b5cdc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01261.RNA-Seq.R2_L001.T C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L001_R2_001.fastq.gz 3503487635 FASTQ R2_L001 unaligned CPTAC3 eca54c3f-6f8a-48a5-ae0e-5f82c5d65522 7d4d0c50450ce43347cd23d2b8bbfdaa { 'aliquot_tag': 'ALQ_a847ed08', 'gdc_sample_type': 'Primary Tumor' } -C3N-01261.RNA-Seq.R2_L002.A C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L002_R2_001.fastq.gz 3708468352 FASTQ R2_L002 unaligned CPTAC3 54968b79-2539-4097-90cc-160d7a2006c8 673c2e935208732a696dc73619628f7f { 'aliquot_tag': 'ALQ_6e0b5cdc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01261.RNA-Seq.genomic.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 10e3df3d-6608-4777-afde-88452856d171.rna_seq.genomic.gdc_realn.bam 6875447975 BAM genomic harmonized CPTAC3 a26331c7-9d6e-4db3-af92-055feb14d5a8 dd8841b43fbc2d2d490a5c8305733389 { 'aliquot_tag': 'ALQ_6e0b5cdc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01261.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 658b66e2-a9ca-4791-b286-97db6816c40c.rna_seq.genomic.gdc_realn.bam 5702877798 BAM genomic harmonized CPTAC3 51679d02-120d-4664-88a8-f768f58d5681 c937007d2a28f744946c8743706cb9db { 'aliquot_tag': 'ALQ_a847ed08', 'gdc_sample_type': 'Primary Tumor' } +C3N-01261.RNA-Seq.R1_L001.T C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L001_R1_001.fastq.gz 3171933083 FASTQ R1_L001 unaligned CPTAC3 5e055bcb-7988-4721-abca-d6ba8ddf2859 aae8d12ccb6e018c19fc5b6828d66128 { 'aliquot_tag': 'ALQ_a847ed08', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01261.RNA-Seq.R1_L002.A C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L002_R1_001.fastq.gz 3320794151 FASTQ R1_L002 unaligned CPTAC3 bf23dd02-c938-4b78-855e-fde50768436a 0c9bc6cdee59c3d8328ef0e5675c2428 { 'aliquot_tag': 'ALQ_6e0b5cdc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-01261.RNA-Seq.R2_L001.T C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L001_R2_001.fastq.gz 3503487635 FASTQ R2_L001 unaligned CPTAC3 eca54c3f-6f8a-48a5-ae0e-5f82c5d65522 7d4d0c50450ce43347cd23d2b8bbfdaa { 'aliquot_tag': 'ALQ_a847ed08', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01261.RNA-Seq.R2_L002.A C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L002_R2_001.fastq.gz 3708468352 FASTQ R2_L002 unaligned CPTAC3 54968b79-2539-4097-90cc-160d7a2006c8 673c2e935208732a696dc73619628f7f { 'aliquot_tag': 'ALQ_6e0b5cdc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } C3N-01261.RNA-Seq.transcriptome.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal CPT0077500006 10e3df3d-6608-4777-afde-88452856d171.rna_seq.transcriptome.gdc_realn.bam 8544270633 BAM transcriptome harmonized CPTAC3 1ba65821-ae37-4628-9c52-ff6cf70fd434 853f94ff3cc65bc4b6bece7d1bb9ce03 { 'aliquot_tag': 'ALQ_6e0b5cdc', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01261.RNA-Seq.transcriptome.T.hg38 C3N-01261 CCRCC RNA-Seq tumor CPT0077490006 658b66e2-a9ca-4791-b286-97db6816c40c.rna_seq.transcriptome.gdc_realn.bam 8004269212 BAM transcriptome harmonized CPTAC3 9c57de4d-0254-44cf-8a29-975480d870d2 7e48e70e3e0f631cf255f4594eea0d2d { 'aliquot_tag': 'ALQ_a847ed08', 'gdc_sample_type': 'Primary Tumor' } C3N-01261.WGS.A C3N-01261 CCRCC WGS tissue_normal CPT0077500009 CPT0077500009.WholeGenome.RP-1303.bam 56275750780 BAM aligned CPTAC3 88fa7665-0c2d-465d-900a-5d7643f652d3 e5fd4081584a41ba23fda380eef42b59 { 'aliquot_tag': 'ALQ_feb4414d', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -24977,12 +26886,15 @@ C3N-01267.MethArray.Red.T C3N-01267 UCEC Methylation Array tumor CPT0027970009 2 C3N-01267.miRNA-Seq.T C3N-01267 UCEC miRNA-Seq tumor CPT0027970006 181012_UNC32-K00270_0124_AH223CBBXY_TGACCA_S25_L004_R1_001.unaln.bam 276187905 BAM unaligned CPTAC3 046b8172-a254-4b12-a76e-a979560f1662 8a4ecfb1d97d7e302e194ff113ef50d9 { 'aliquot_tag': 'ALQ_e3094ed3', 'gdc_sample_type': 'Primary Tumor' } C3N-01267.miRNA-Seq.T.hg38 C3N-01267 UCEC miRNA-Seq tumor CPT0027970006 d64b3493-643b-4bad-a009-e8558d048071_mirnaseq_gdc_realn.bam 304888226 BAM harmonized CPTAC3 f87e0dfd-4c84-402d-83a5-894f41d6b47d 509ab95e775da73471fb7ecddc680944 { 'aliquot_tag': 'ALQ_e3094ed3', 'gdc_sample_type': 'Primary Tumor' } C3N-01267.RNA-Seq.chimeric.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0027970006 ced9db0e-74ff-434c-baf6-aec17cb60794.rna_seq.chimeric.gdc_realn.bam 106655079 BAM chimeric harmonized CPTAC3 02b50d0a-58b3-4303-a5e2-ead3df6f3413 f1439ec369049ac4bb6362a930d3bc51 { 'aliquot_tag': 'ALQ_e3094ed3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01267.RNA-Seq.chimeric.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0028020001 7f12ed96-b2d8-4b4b-8212-1d496f0a8923.rna_seq.chimeric.gdc_realn.bam 164775486 BAM chimeric harmonized CPTAC3 babc1131-d145-40a4-9211-0611d659b518 d5aee35179c2556f2466ec5822bff121 { 'aliquot_tag': 'ALQ_64ca7521', 'gdc_sample_type': 'Primary Tumor' } C3N-01267.RNA-Seq.genomic.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0027970006 ced9db0e-74ff-434c-baf6-aec17cb60794.rna_seq.genomic.gdc_realn.bam 11487985131 BAM genomic harmonized CPTAC3 766c37aa-e6eb-482c-80a9-e44f7a7e960d 2d121bf12a0d2f7caa7aabf6234a0241 { 'aliquot_tag': 'ALQ_e3094ed3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01267.RNA-Seq.R1_L005.T C3N-01267 UCEC RNA-Seq tumor CPT0027970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATGTCA_S18_L005_R1_001.fastq.gz 5686283942 FASTQ R1_L005 unaligned CPTAC3 63431135-a82e-4a29-a17d-70ca5b7def70 b4328b79f0334daaed17db93a1cf3f4e { 'aliquot_tag': 'ALQ_e3094ed3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01267.RNA-Seq.R1_.T C3N-01267 UCEC RNA-Seq tumor CPT0028020001 20210714_P1_C11_WB7988_plate1_S35_R1_001.fastq.gz 4990758725 FASTQ R1_ unaligned CPTAC3 68c9c5e4-b847-4c3d-8660-4616feac2ff6 d7c20600573918b9e0a1290b588f77c0 { 'aliquot_tag': 'ALQ_64ca7521', 'gdc_sample_type': 'Primary Tumor' } -C3N-01267.RNA-Seq.R2_L005.T C3N-01267 UCEC RNA-Seq tumor CPT0027970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATGTCA_S18_L005_R2_001.fastq.gz 6163184337 FASTQ R2_L005 unaligned CPTAC3 a09574f4-c3e1-428c-a8a0-412950a3872a e5622f9e9cd5e8669f0a076740b3d3b9 { 'aliquot_tag': 'ALQ_e3094ed3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01267.RNA-Seq.R2_.T C3N-01267 UCEC RNA-Seq tumor CPT0028020001 20210714_P1_C11_WB7988_plate1_S35_R2_001.fastq.gz 5205513774 FASTQ R2_ unaligned CPTAC3 b90475eb-62a2-4be4-a31e-989bf1810c20 4dd8c725787542652708c1380b1749a5 { 'aliquot_tag': 'ALQ_64ca7521', 'gdc_sample_type': 'Primary Tumor' } +C3N-01267.RNA-Seq.genomic.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0028020001 7f12ed96-b2d8-4b4b-8212-1d496f0a8923.rna_seq.genomic.gdc_realn.bam 8356262268 BAM genomic harmonized CPTAC3 4d2c5c4b-30ad-4226-8daf-1daa1604800d d9983e626082ce20b90bf8ff96286a72 { 'aliquot_tag': 'ALQ_64ca7521', 'gdc_sample_type': 'Primary Tumor' } +C3N-01267.RNA-Seq.R1_L005.T C3N-01267 UCEC RNA-Seq tumor CPT0027970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATGTCA_S18_L005_R1_001.fastq.gz 5686283942 FASTQ R1_L005 unaligned CPTAC3 63431135-a82e-4a29-a17d-70ca5b7def70 b4328b79f0334daaed17db93a1cf3f4e { 'aliquot_tag': 'ALQ_e3094ed3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01267.RNA-Seq.R2_L005.T C3N-01267 UCEC RNA-Seq tumor CPT0027970006 170912_UNC31-K00269_0081_AHL3YKBBXX_ATGTCA_S18_L005_R2_001.fastq.gz 6163184337 FASTQ R2_L005 unaligned CPTAC3 a09574f4-c3e1-428c-a8a0-412950a3872a e5622f9e9cd5e8669f0a076740b3d3b9 { 'aliquot_tag': 'ALQ_e3094ed3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01267.RNA-Seq.T C3N-01267 UCEC RNA-Seq tumor CPT0028020001 20210714_P1_C11_WB7988_plate1_S35_R1_001.fastq.gz 4990758725 FASTQ unaligned CPTAC3 68c9c5e4-b847-4c3d-8660-4616feac2ff6 d7c20600573918b9e0a1290b588f77c0 +C3N-01267.RNA-Seq.T C3N-01267 UCEC RNA-Seq tumor CPT0028020001 20210714_P1_C11_WB7988_plate1_S35_R2_001.fastq.gz 5205513774 FASTQ unaligned CPTAC3 b90475eb-62a2-4be4-a31e-989bf1810c20 4dd8c725787542652708c1380b1749a5 C3N-01267.RNA-Seq.transcriptome.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0027970006 ced9db0e-74ff-434c-baf6-aec17cb60794.rna_seq.transcriptome.gdc_realn.bam 14988924488 BAM transcriptome harmonized CPTAC3 0400c3d0-d6e3-4cf5-9087-7909a2a9a212 e568cf1b6fd19f83f98c939cb28c728f { 'aliquot_tag': 'ALQ_e3094ed3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01267.RNA-Seq.transcriptome.T.hg38 C3N-01267 UCEC RNA-Seq tumor CPT0028020001 7f12ed96-b2d8-4b4b-8212-1d496f0a8923.rna_seq.transcriptome.gdc_realn.bam 4535225100 BAM transcriptome harmonized CPTAC3 6e68ebe3-31bf-48fb-9922-ceed7fc8ac6b 50d8894595a60aecb416d763cd323e68 { 'aliquot_tag': 'ALQ_64ca7521', 'gdc_sample_type': 'Primary Tumor' } C3N-01267.WGS.N C3N-01267 UCEC WGS blood_normal CPT0028110002 CPT0028110002.WholeGenome.RP-1303.bam 69583043979 BAM aligned CPTAC3 1db5b9d3-67d6-4d6f-97e1-960036e545b7 12eb429e996cb17b3e2d1b7a755850d8 { 'aliquot_tag': 'ALQ_713f8dee', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01267.WGS.N.hg38 C3N-01267 UCEC WGS blood_normal CPT0028110002 ef8eadff-62be-4e36-a2d3-9d4a618b2ff2_gdc_realn.bam 101592864336 BAM harmonized CPTAC3 a532762d-a05a-4be3-911a-21a9c44c1c5c d4090c8a94f54e63a087761ed27650d7 { 'aliquot_tag': 'ALQ_713f8dee', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01267.WGS.T C3N-01267 UCEC WGS tumor CPT0027970009 CPT0027970009.WholeGenome.RP-1303.bam 67074734263 BAM aligned CPTAC3 a8ebd5ad-5140-4171-8005-4d4629b4313d bd9bbc4b907047346c73bfb6c63bcf34 { 'aliquot_tag': 'ALQ_73b65342', 'gdc_sample_type': 'Primary Tumor' } @@ -24995,11 +26907,11 @@ C3N-01270.MethArray.Green.T C3N-01270 CCRCC Methylation Array tumor CPT037998000 C3N-01270.MethArray.Red.T C3N-01270 CCRCC Methylation Array tumor CPT0379980009 205555380179_R04C01_Red.idat 13677960 IDAT Red NA CPTAC3 6c1aed5a-8f7e-4c76-9f89-2bb3aa98caaa ddef2b60613f978b033f3c0a1cd38bd2 { 'aliquot_tag': 'ALQ_d0b48d6f', 'gdc_sample_type': 'Primary Tumor' } C3N-01270.miRNA-Seq.T C3N-01270 CCRCC miRNA-Seq tumor CPT0379980006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TGACCA_S47_L003_R1_001.unaln.bam 296899051 BAM unaligned CPTAC3 3a4c35aa-b291-4dc0-9dae-490fa66ba448 d645a43d86e36a3214cfd02047451184 { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor' } C3N-01270.miRNA-Seq.T.hg38 C3N-01270 CCRCC miRNA-Seq tumor CPT0379980006 09c29468-8198-4938-9528-84e42671821c_mirnaseq_gdc_realn.bam 317659746 BAM harmonized CPTAC3 202ca8c5-4688-4a1f-88c8-a31b946880c2 516652ad598203a3286aca5ccb6cb356 { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor' } -C3N-01270.RNA-Seq.chimeric.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 9c0e01e7-628c-4679-b29c-59fdcd04815f.rna_seq.chimeric.gdc_realn.bam 84553590 BAM chimeric harmonized CPTAC3 0970ee41-ecd0-4c5f-9d01-d626094d356c 02c6e3a8e22a227a9c0a5170b0c5db50 { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor' } -C3N-01270.RNA-Seq.genomic.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 9c0e01e7-628c-4679-b29c-59fdcd04815f.rna_seq.genomic.gdc_realn.bam 8581327424 BAM genomic harmonized CPTAC3 caa4c951-bd65-4666-87aa-8d8373b62aa2 6a471e9b8d2a064c2c94401d94f12b77 { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor' } -C3N-01270.RNA-Seq.R1_L008.T C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 210105_UNC32-K00270_0269_BHKN5MBBXY_AAGTCCAA-TATGAGTA_S29_L008_R1_001.fastq.gz 4022165445 FASTQ R1_L008 unaligned CPTAC3 0898addb-d937-47ec-a08c-254a9b47aac1 3ef09fe088d58613b521a590d996a9c3 { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor' } -C3N-01270.RNA-Seq.R2_L008.T C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 210105_UNC32-K00270_0269_BHKN5MBBXY_AAGTCCAA-TATGAGTA_S29_L008_R2_001.fastq.gz 4643494347 FASTQ R2_L008 unaligned CPTAC3 daca7c43-c7a1-490b-a280-1fa6dae51b2e 5b18e29be0dd5c3f2d23c32d6367c7ab { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor' } -C3N-01270.RNA-Seq.transcriptome.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 9c0e01e7-628c-4679-b29c-59fdcd04815f.rna_seq.transcriptome.gdc_realn.bam 8992641222 BAM transcriptome harmonized CPTAC3 e0fb8fb1-abe8-4646-a19a-64be08202ef4 e1a24664c9623c68ac23335f5ad3b3e8 { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor' } +C3N-01270.RNA-Seq.chimeric.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 ee939d20-6e85-4f45-9fd4-49669e1222d4.rna_seq.chimeric.gdc_realn.bam 84546035 BAM chimeric harmonized CPTAC3 75dbf0f4-5a54-4810-90fd-6f14231cbf35 5fe7708e824fb31c68a8d3ae1442510f { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor' } +C3N-01270.RNA-Seq.genomic.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 ee939d20-6e85-4f45-9fd4-49669e1222d4.rna_seq.genomic.gdc_realn.bam 8588571908 BAM genomic harmonized CPTAC3 f5e8c458-8837-48c4-9562-9c521ce9e9d0 48495ad2037b48e3848c717c4a0f333d { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor' } +C3N-01270.RNA-Seq.R1_L008.T C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 210105_UNC32-K00270_0269_BHKN5MBBXY_AAGTCCAA-TATGAGTA_S29_L008_R1_001.fastq.gz 4022165445 FASTQ R1_L008 unaligned CPTAC3 0898addb-d937-47ec-a08c-254a9b47aac1 3ef09fe088d58613b521a590d996a9c3 { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01270.RNA-Seq.R2_L008.T C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 210105_UNC32-K00270_0269_BHKN5MBBXY_AAGTCCAA-TATGAGTA_S29_L008_R2_001.fastq.gz 4643494347 FASTQ R2_L008 unaligned CPTAC3 daca7c43-c7a1-490b-a280-1fa6dae51b2e 5b18e29be0dd5c3f2d23c32d6367c7ab { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01270.RNA-Seq.transcriptome.T.hg38 C3N-01270 CCRCC RNA-Seq tumor CPT0379980006 ee939d20-6e85-4f45-9fd4-49669e1222d4.rna_seq.transcriptome.gdc_realn.bam 10362064235 BAM transcriptome harmonized CPTAC3 d1b4b2cd-4c9d-4778-9777-b82e57dfe90a b42041bf0cbc6fa422d62a5265a88d94 { 'aliquot_tag': 'ALQ_400b90fe', 'gdc_sample_type': 'Primary Tumor' } C3N-01270.WGS.N C3N-01270 CCRCC WGS blood_normal CPT0380060002 CPT0380060002.WholeGenome.RP-2158.bam 23683580215 BAM aligned CPTAC3 9326b369-e74e-48a7-8c40-cf479097394f f0c95aae9082650ec6cd91b4ebc44605 { 'aliquot_tag': 'ALQ_93e1ec31', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01270.WGS.N.hg38 C3N-01270 CCRCC WGS blood_normal CPT0380060002 a28bbf6b-2874-4a64-b595-677c311757ec_wgs_gdc_realn.bam 72517616586 BAM harmonized CPTAC3 22bc60dc-186d-4097-bd75-e17b16c2f828 a8b363391d2fe11bc2b4f3b23b9c8091 { 'aliquot_tag': 'ALQ_93e1ec31', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01270.WGS.T C3N-01270 CCRCC WGS tumor CPT0379980009 CPT0379980009.WholeGenome.RP-2158.bam 34128078847 BAM aligned CPTAC3 ba70be97-27d2-4442-b1e5-02f7072934e3 762c2abc06bd786eda98440fa382b119 { 'aliquot_tag': 'ALQ_d0b48d6f', 'gdc_sample_type': 'Primary Tumor' } @@ -25013,12 +26925,12 @@ C3N-01334.MethArray.Red.T C3N-01334 GBM Methylation Array tumor CPT0125220006 20 C3N-01334.miRNA-Seq.T C3N-01334 GBM miRNA-Seq tumor CPT0125220009 181108_UNC31-K00269_0162_AH255GBBXY_CACGAT_S7_L001_R1_001.unaln.bam 250135148 BAM unaligned CPTAC3 81dc77c5-3629-4def-a2d6-b0df52ae1362 a63683b5b419fb7151f3b5da6982b112 { 'aliquot_tag': 'ALQ_5175299b', 'gdc_sample_type': 'Primary Tumor' } C3N-01334.miRNA-Seq.T.hg38 C3N-01334 GBM miRNA-Seq tumor CPT0125220009 a13249af-193b-4239-9751-91a6c60b8dfd_mirnaseq_gdc_realn.bam 275759979 BAM harmonized CPTAC3 6a099608-bb61-421e-b952-3e8ed83d064d 5a26a65f9d4122ad3aa1cfc49d1d420b { 'aliquot_tag': 'ALQ_5175299b', 'gdc_sample_type': 'Primary Tumor' } C3N-01334.RNA-Seq.chimeric.T.hg38 C3N-01334 GBM RNA-Seq tumor CPT0125220009 a47a849d-cfed-4b4a-a52a-4748f024ab02.rna_seq.chimeric.gdc_realn.bam 128567152 BAM chimeric harmonized CPTAC3 c19f5d92-751c-4949-b729-e6b6ff4aa581 cbb0153e86bb24f7bd9182a16eaee89e { 'aliquot_tag': 'ALQ_5175299b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01334.RNA-Seq.genomic.T.hg38 C3N-01334 GBM RNA-Seq tumor CPT0125220009 a47a849d-cfed-4b4a-a52a-4748f024ab02.rna_seq.genomic.gdc_realn.bam 8680737484 BAM genomic harmonized CPTAC3 8c76e01d-78ca-4aa6-8d82-4c56d420e41c be11863e9a2b542cd8953e88a4d7eda7 { 'aliquot_tag': 'ALQ_5175299b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01334.RNA-Seq.R1_L007.T C3N-01334 GBM RNA-Seq tumor CPT0125220009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R1_001.fastq.gz 3964104440 FASTQ R1_L007 unaligned CPTAC3 3cc957f8-1cd0-4197-96b8-30bd1a5cc776 85c17b002082377d2c99cc1d6e962e04 { 'aliquot_tag': 'ALQ_5175299b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01334.RNA-Seq.R2_L007.T C3N-01334 GBM RNA-Seq tumor CPT0125220009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R2_001.fastq.gz 4396759449 FASTQ R2_L007 unaligned CPTAC3 a6823ef4-4fb2-4188-8214-4de92ce913a2 baccb61de188456f5868f6a6ea2a68fb { 'aliquot_tag': 'ALQ_5175299b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01334.RNA-Seq.genomic.T.hg38 C3N-01334 GBM RNA-Seq tumor CPT0125220009 a47a849d-cfed-4b4a-a52a-4748f024ab02.rna_seq.genomic.gdc_realn.bam 8680737484 BAM genomic harmonized CPTAC3 e883d26e-53a8-4459-94ce-4cc678216cf3 be11863e9a2b542cd8953e88a4d7eda7 { 'aliquot_tag': 'ALQ_5175299b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01334.RNA-Seq.R1_L007.T C3N-01334 GBM RNA-Seq tumor CPT0125220009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R1_001.fastq.gz 3964104440 FASTQ R1_L007 unaligned CPTAC3 3cc957f8-1cd0-4197-96b8-30bd1a5cc776 85c17b002082377d2c99cc1d6e962e04 { 'aliquot_tag': 'ALQ_5175299b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01334.RNA-Seq.R2_L007.T C3N-01334 GBM RNA-Seq tumor CPT0125220009 180516_UNC31-K00269_0129_AHTWLFBBXX_CAGATC_S8_L007_R2_001.fastq.gz 4396759449 FASTQ R2_L007 unaligned CPTAC3 a6823ef4-4fb2-4188-8214-4de92ce913a2 baccb61de188456f5868f6a6ea2a68fb { 'aliquot_tag': 'ALQ_5175299b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01334.RNA-Seq.transcriptome.T.hg38 C3N-01334 GBM RNA-Seq tumor CPT0125220009 a47a849d-cfed-4b4a-a52a-4748f024ab02.rna_seq.transcriptome.gdc_realn.bam 9235189524 BAM transcriptome harmonized CPTAC3 359a248b-c888-4dfc-bbb0-f3da1a1c2834 3df2906ecfc7e9d712e4cd3183ab72ba { 'aliquot_tag': 'ALQ_5175299b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01334.scRNA-Seq.R1_L001.T C3N-01334 GBM scRNA-Seq tumor CPT0125220004 20200618_WUSTL_CPT0125220004_GCGCAGAA-ATCTTACC-TATGGTGT-CGAACCTG_S3_L001_R1_001.fastq.gz 9509432240 FASTQ R1_L001 unaligned CPTAC3 9c645991-b038-4ee7-9388-61b31e0f800b 61ffdb1fc8c97c668fddacdc441b119c { 'aliquot_tag': 'ALQ_2fc45526', 'gdc_sample_type': 'Primary Tumor' } -C3N-01334.scRNA-Seq.R2_L001.T C3N-01334 GBM scRNA-Seq tumor CPT0125220004 20200618_WUSTL_CPT0125220004_GCGCAGAA-ATCTTACC-TATGGTGT-CGAACCTG_S3_L001_R2_001.fastq.gz 22676722596 FASTQ R2_L001 unaligned CPTAC3 444e55b6-4c1c-437e-b097-1f6fe70ce245 7759b9bd6edca8c6e5eefc01bfca73ac { 'aliquot_tag': 'ALQ_2fc45526', 'gdc_sample_type': 'Primary Tumor' } +C3N-01334.scRNA-Seq.R1_L001.T C3N-01334 GBM scRNA-Seq tumor CPT0125220004 20200618_WUSTL_CPT0125220004_GCGCAGAA-ATCTTACC-TATGGTGT-CGAACCTG_S3_L001_R1_001.fastq.gz 9509432240 FASTQ R1_L001 unaligned CPTAC3 9c645991-b038-4ee7-9388-61b31e0f800b 61ffdb1fc8c97c668fddacdc441b119c { 'aliquot_tag': 'ALQ_2fc45526', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01334.scRNA-Seq.R2_L001.T C3N-01334 GBM scRNA-Seq tumor CPT0125220004 20200618_WUSTL_CPT0125220004_GCGCAGAA-ATCTTACC-TATGGTGT-CGAACCTG_S3_L001_R2_001.fastq.gz 22676722596 FASTQ R2_L001 unaligned CPTAC3 444e55b6-4c1c-437e-b097-1f6fe70ce245 7759b9bd6edca8c6e5eefc01bfca73ac { 'aliquot_tag': 'ALQ_2fc45526', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-01334.scRNA-Seq.T.hg38 C3N-01334 GBM scRNA-Seq tumor CPT0125220004 possorted_genome_bam.bam 25480646057 BAM harmonized CPTAC3 c2689d4e-8fb5-406d-9a9c-d379d950037f bca03b32d20bb26aaceebdbf37ee5959 { 'aliquot_tag': 'ALQ_2fc45526', 'gdc_sample_type': 'Primary Tumor' } C3N-01334.WGS.N C3N-01334 GBM WGS blood_normal CPT0125250002 CPT0125250002.WholeGenome.RP-1303.bam 62961118881 BAM aligned CPTAC3 998a823c-24d7-41ec-865a-62c9ee65a71b 508d106bef15c7131942375e690581f4 { 'aliquot_tag': 'ALQ_74872c03', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01334.WGS.N.hg38 C3N-01334 GBM WGS blood_normal CPT0125250002 1f02adc4-0b20-4fd3-ad08-5d4c6b3b4b18_wgs_gdc_realn.bam 90333471413 BAM harmonized CPTAC3 5980d118-12c4-440c-ba3d-3edfa259658a 0861cc27aa030704e8e9f2f7896aa8bb { 'aliquot_tag': 'ALQ_74872c03', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25036,16 +26948,19 @@ C3N-01337.miRNA-Seq.T C3N-01337 HNSCC miRNA-Seq tumor CPT0087990006 180828_UNC32 C3N-01337.miRNA-Seq.T.hg38 C3N-01337 HNSCC miRNA-Seq tumor CPT0087990006 ad252f93-ea73-4060-ac55-3e373fecb9d2_mirnaseq_gdc_realn.bam 222355118 BAM harmonized CPTAC3 17713a9f-caa1-4f51-9dad-952106b04cf1 9426cd24732bac6a8e6e5cccb37738cb { 'aliquot_tag': 'ALQ_cdf9ec7a', 'gdc_sample_type': 'Primary Tumor' } C3N-01337.RNA-Seq.chimeric.A.hg38 C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 8362663c-31eb-403e-9eb0-dae02d02c8c9.rna_seq.chimeric.gdc_realn.bam 12985563 BAM chimeric harmonized CPTAC3 f9f8dd90-26cf-4e3e-a7ae-8126446ab182 43d6f697a76c6b0fb4033d697859954d { 'aliquot_tag': 'ALQ_bc719b0b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01337.RNA-Seq.chimeric.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 a360d66c-82e7-428c-99cf-605401dc61f1.rna_seq.chimeric.gdc_realn.bam 40058562 BAM chimeric harmonized CPTAC3 329758c5-e4b7-4bd9-9065-056b3a9aa0c4 04b1ea177fd1acfe715de1de2e411a1e { 'aliquot_tag': 'ALQ_cdf9ec7a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01337.RNA-Seq.genomic.A.hg38 C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 8362663c-31eb-403e-9eb0-dae02d02c8c9.rna_seq.genomic.gdc_realn.bam 6424919842 BAM genomic harmonized CPTAC3 6320cf57-18b3-44f3-a4c2-37a47225a1d0 2f3a191a2dcfaf25d4456efdb38a8c2c { 'aliquot_tag': 'ALQ_bc719b0b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01337.RNA-Seq.genomic.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 a360d66c-82e7-428c-99cf-605401dc61f1.rna_seq.genomic.gdc_realn.bam 11651430543 BAM genomic harmonized CPTAC3 9194dace-a6a0-4a16-a054-13676611f03d f1ee10861f01c96d5a7391d88d239c10 { 'aliquot_tag': 'ALQ_cdf9ec7a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01337.RNA-Seq.R1_L001.T C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 171129_UNC32-K00270_0066_AHM25VBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 4788972008 FASTQ R1_L001 unaligned CPTAC3 ea84dfa7-362e-41bd-af0a-9183260cee41 f8138408ce5cd65457f0a4ea0fa76076 { 'aliquot_tag': 'ALQ_cdf9ec7a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01337.RNA-Seq.R1_L005.A C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTTTCG_S19_L005_R1_001.fastq.gz 2503193362 FASTQ R1_L005 unaligned CPTAC3 d9a38a4b-6e75-4b8a-ba69-38d4bb749ad9 f14e7cfcb3694b6498962a0070984e27 { 'aliquot_tag': 'ALQ_bc719b0b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01337.RNA-Seq.R1_.T C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 20210723_P2_E1_WB7988-plate2_S49_R1_001.fastq.gz 5846796128 FASTQ R1_ unaligned CPTAC3 20270207-1151-4641-b428-6b42171dd34b 490971bbd77c3163e69058564beb1131 { 'aliquot_tag': 'ALQ_1a1efe51', 'gdc_sample_type': 'Primary Tumor' } -C3N-01337.RNA-Seq.R2_L001.T C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 171129_UNC32-K00270_0066_AHM25VBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 5466397642 FASTQ R2_L001 unaligned CPTAC3 b59c44a2-261e-4035-a6a9-deb3160eadea 4ef30c903204fbf3fa8c3ca237004bd0 { 'aliquot_tag': 'ALQ_cdf9ec7a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01337.RNA-Seq.R2_L005.A C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTTTCG_S19_L005_R2_001.fastq.gz 2776505428 FASTQ R2_L005 unaligned CPTAC3 63d27db0-605c-48d9-9e25-5c93879a73cc 7971c960d46d4e23e8472aa0d137cb13 { 'aliquot_tag': 'ALQ_bc719b0b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01337.RNA-Seq.R2_.T C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 20210723_P2_E1_WB7988-plate2_S49_R2_001.fastq.gz 5999541002 FASTQ R2_ unaligned CPTAC3 e84584b3-002c-4a60-8394-5c2036b94697 30c3adc61e3a5359efdc748c537d09e4 { 'aliquot_tag': 'ALQ_1a1efe51', 'gdc_sample_type': 'Primary Tumor' } +C3N-01337.RNA-Seq.chimeric.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 45179b96-953a-41bb-b711-7a3f8d1a11cc.rna_seq.chimeric.gdc_realn.bam 138003437 BAM chimeric harmonized CPTAC3 9ba58794-4aae-4357-94df-6f6eb03f4036 d2f0d2749a404dc38179f9df59ca9503 { 'aliquot_tag': 'ALQ_1a1efe51', 'gdc_sample_type': 'Primary Tumor' } +C3N-01337.RNA-Seq.genomic.A.hg38 C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 8362663c-31eb-403e-9eb0-dae02d02c8c9.rna_seq.genomic.gdc_realn.bam 6424919842 BAM genomic harmonized CPTAC3 01fa620a-d5fa-4348-a95a-2d0007137307 2f3a191a2dcfaf25d4456efdb38a8c2c { 'aliquot_tag': 'ALQ_bc719b0b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01337.RNA-Seq.genomic.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 a360d66c-82e7-428c-99cf-605401dc61f1.rna_seq.genomic.gdc_realn.bam 11651430543 BAM genomic harmonized CPTAC3 ddcfb06f-f917-4fb6-8aff-969e085948dd f1ee10861f01c96d5a7391d88d239c10 { 'aliquot_tag': 'ALQ_cdf9ec7a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01337.RNA-Seq.genomic.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 45179b96-953a-41bb-b711-7a3f8d1a11cc.rna_seq.genomic.gdc_realn.bam 10689253959 BAM genomic harmonized CPTAC3 b10c7480-89c9-4859-a6bf-f5be06896fdb 6f8cdfb3e1b48e0d08848a17f20ee59a { 'aliquot_tag': 'ALQ_1a1efe51', 'gdc_sample_type': 'Primary Tumor' } +C3N-01337.RNA-Seq.R1_L001.T C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 171129_UNC32-K00270_0066_AHM25VBBXX_GCCAAT_S2_L001_R1_001.fastq.gz 4788972008 FASTQ R1_L001 unaligned CPTAC3 ea84dfa7-362e-41bd-af0a-9183260cee41 f8138408ce5cd65457f0a4ea0fa76076 { 'aliquot_tag': 'ALQ_cdf9ec7a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01337.RNA-Seq.R1_L005.A C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTTTCG_S19_L005_R1_001.fastq.gz 2503193362 FASTQ R1_L005 unaligned CPTAC3 d9a38a4b-6e75-4b8a-ba69-38d4bb749ad9 f14e7cfcb3694b6498962a0070984e27 { 'aliquot_tag': 'ALQ_bc719b0b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01337.RNA-Seq.R2_L001.T C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 171129_UNC32-K00270_0066_AHM25VBBXX_GCCAAT_S2_L001_R2_001.fastq.gz 5466397642 FASTQ R2_L001 unaligned CPTAC3 b59c44a2-261e-4035-a6a9-deb3160eadea 4ef30c903204fbf3fa8c3ca237004bd0 { 'aliquot_tag': 'ALQ_cdf9ec7a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01337.RNA-Seq.R2_L005.A C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTTTCG_S19_L005_R2_001.fastq.gz 2776505428 FASTQ R2_L005 unaligned CPTAC3 63d27db0-605c-48d9-9e25-5c93879a73cc 7971c960d46d4e23e8472aa0d137cb13 { 'aliquot_tag': 'ALQ_bc719b0b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01337.RNA-Seq.T C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 20210723_P2_E1_WB7988-plate2_S49_R1_001.fastq.gz 5846796128 FASTQ unaligned CPTAC3 20270207-1151-4641-b428-6b42171dd34b 490971bbd77c3163e69058564beb1131 +C3N-01337.RNA-Seq.T C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 20210723_P2_E1_WB7988-plate2_S49_R2_001.fastq.gz 5999541002 FASTQ unaligned CPTAC3 e84584b3-002c-4a60-8394-5c2036b94697 30c3adc61e3a5359efdc748c537d09e4 C3N-01337.RNA-Seq.transcriptome.A.hg38 C3N-01337 HNSCC RNA-Seq tissue_normal CPT0088010009 8362663c-31eb-403e-9eb0-dae02d02c8c9.rna_seq.transcriptome.gdc_realn.bam 8768088070 BAM transcriptome harmonized CPTAC3 a24b9a00-fd76-49cc-9c9d-cc82e176c733 3f9edf7080f9e1f9588c0df38542156c { 'aliquot_tag': 'ALQ_bc719b0b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01337.RNA-Seq.transcriptome.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0087990006 a360d66c-82e7-428c-99cf-605401dc61f1.rna_seq.transcriptome.gdc_realn.bam 13133808698 BAM transcriptome harmonized CPTAC3 b5affe34-1688-461d-93a3-7d3867f8d2c2 4d7953abed9c3db9dd108cc8f3b30b97 { 'aliquot_tag': 'ALQ_cdf9ec7a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01337.RNA-Seq.transcriptome.T.hg38 C3N-01337 HNSCC RNA-Seq tumor CPT0314510011 45179b96-953a-41bb-b711-7a3f8d1a11cc.rna_seq.transcriptome.gdc_realn.bam 7602069093 BAM transcriptome harmonized CPTAC3 d3004a74-fdc4-49b7-baa3-6293d8663dde 8e5e4321b35815f109fba5ea48320f9e { 'aliquot_tag': 'ALQ_1a1efe51', 'gdc_sample_type': 'Primary Tumor' } C3N-01337.WGS.A C3N-01337 HNSCC WGS tissue_normal CPT0088010006 CPT0088010006.WholeGenome.RP-1303.bam 58905868115 BAM aligned CPTAC3 8567a66c-7b60-4ca4-9093-80ffe0e8366e 8d9a42e992a762a0b2b33a587edfd57f { 'aliquot_tag': 'ALQ_2cce869a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01337.WGS.A.hg38 C3N-01337 HNSCC WGS tissue_normal CPT0088010006 ccd05ad6-d909-4da7-8f5f-5326e0a6db42_wgs_gdc_realn.bam 85357987865 BAM harmonized CPTAC3 7232386e-c114-4ca2-ba4c-3a102becbb45 1311701ad03fe0ca19ea88bc64ac04fa { 'aliquot_tag': 'ALQ_2cce869a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01337.WGS.N C3N-01337 HNSCC WGS blood_normal CPT0088050002 CPT0088050002.WholeGenome.RP-1303.bam 59064767532 BAM aligned CPTAC3 1ae3d429-c5d9-49c7-bd77-05ee45a670f4 190961d9e81ed5e0f367246f68697971 { 'aliquot_tag': 'ALQ_de23e443', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25066,12 +26981,12 @@ C3N-01338.miRNA-Seq.T C3N-01338 HNSCC miRNA-Seq tumor CPT0088060007 180724_UNC32 C3N-01338.miRNA-Seq.T.hg38 C3N-01338 HNSCC miRNA-Seq tumor CPT0088060007 2df227c0-96a8-4290-b869-9be58841c11f_mirnaseq_gdc_realn.bam 218161018 BAM harmonized CPTAC3 3a279538-ee20-45bd-aee4-02fa96a87a19 e3130ff812fdb64dc8f0d145748fbf61 { 'aliquot_tag': 'ALQ_e9e96a1c', 'gdc_sample_type': 'Primary Tumor' } C3N-01338.RNA-Seq.chimeric.A.hg38 C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 4599fd14-5873-418e-8997-452f2942faf4.rna_seq.chimeric.gdc_realn.bam 21862816 BAM chimeric harmonized CPTAC3 50344f6d-0e19-4806-983a-27622e6551d6 148876841519b4c29a256e713df65f75 { 'aliquot_tag': 'ALQ_b161f97a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01338.RNA-Seq.chimeric.T.hg38 C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 d2cba871-5d89-474b-9adb-dbdb83a5b85f.rna_seq.chimeric.gdc_realn.bam 38894202 BAM chimeric harmonized CPTAC3 f4ab1fa1-55d2-482d-b5cc-b1ff2c3a4745 3ac68d5d7183b7a32f2e2ff8b9fb2f7b { 'aliquot_tag': 'ALQ_e9e96a1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01338.RNA-Seq.genomic.A.hg38 C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 4599fd14-5873-418e-8997-452f2942faf4.rna_seq.genomic.gdc_realn.bam 8511166047 BAM genomic harmonized CPTAC3 a060f45b-f244-46cc-a28e-94426ccc5e21 bc5ad5fee8bf434d998742920522f990 { 'aliquot_tag': 'ALQ_b161f97a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01338.RNA-Seq.genomic.T.hg38 C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 d2cba871-5d89-474b-9adb-dbdb83a5b85f.rna_seq.genomic.gdc_realn.bam 9098282641 BAM genomic harmonized CPTAC3 d7f7185d-0671-4d8f-9e3a-9351e86b5b47 5ce32604a9c0437624ae5a0d87124c12 { 'aliquot_tag': 'ALQ_e9e96a1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01338.RNA-Seq.R1_L005.A C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 180516_UNC31-K00269_0130_BHV22JBBXX_TTAGGC_S17_L005_R1_001.fastq.gz 3862068086 FASTQ R1_L005 unaligned CPTAC3 bc9c20c8-2b66-43f9-9af9-2e2a3ab09b66 24a2117d80fa957858f2b01e66b64177 { 'aliquot_tag': 'ALQ_b161f97a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01338.RNA-Seq.R1_L008.T C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 171129_UNC32-K00270_0066_AHM25VBBXX_ATTCCT_S23_L008_R1_001.fastq.gz 4023050359 FASTQ R1_L008 unaligned CPTAC3 5470e81f-8fc5-4e01-9c5d-41689344e47a 5cb345f5d9a2a66eb9bdb243d54cdc93 { 'aliquot_tag': 'ALQ_e9e96a1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01338.RNA-Seq.R2_L005.A C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 180516_UNC31-K00269_0130_BHV22JBBXX_TTAGGC_S17_L005_R2_001.fastq.gz 4195077773 FASTQ R2_L005 unaligned CPTAC3 07c5cb0b-e1c0-4fd9-bb00-2819c4c2c5e0 cfd2029fca5a0f32a0b233130d51bd7b { 'aliquot_tag': 'ALQ_b161f97a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01338.RNA-Seq.R2_L008.T C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 171129_UNC32-K00270_0066_AHM25VBBXX_ATTCCT_S23_L008_R2_001.fastq.gz 4490986247 FASTQ R2_L008 unaligned CPTAC3 45bee5df-929e-442e-bbe8-2e2896674e63 6f80c879add3c41b55aebc5e06b921a4 { 'aliquot_tag': 'ALQ_e9e96a1c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01338.RNA-Seq.genomic.A.hg38 C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 4599fd14-5873-418e-8997-452f2942faf4.rna_seq.genomic.gdc_realn.bam 8511166047 BAM genomic harmonized CPTAC3 f83d474d-300a-41ef-bb11-3c68557790c2 bc5ad5fee8bf434d998742920522f990 { 'aliquot_tag': 'ALQ_b161f97a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01338.RNA-Seq.genomic.T.hg38 C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 d2cba871-5d89-474b-9adb-dbdb83a5b85f.rna_seq.genomic.gdc_realn.bam 9098282641 BAM genomic harmonized CPTAC3 da33fb81-312c-4fbd-9757-575a3e3927d9 5ce32604a9c0437624ae5a0d87124c12 { 'aliquot_tag': 'ALQ_e9e96a1c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01338.RNA-Seq.R1_L005.A C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 180516_UNC31-K00269_0130_BHV22JBBXX_TTAGGC_S17_L005_R1_001.fastq.gz 3862068086 FASTQ R1_L005 unaligned CPTAC3 bc9c20c8-2b66-43f9-9af9-2e2a3ab09b66 24a2117d80fa957858f2b01e66b64177 { 'aliquot_tag': 'ALQ_b161f97a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01338.RNA-Seq.R1_L008.T C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 171129_UNC32-K00270_0066_AHM25VBBXX_ATTCCT_S23_L008_R1_001.fastq.gz 4023050359 FASTQ R1_L008 unaligned CPTAC3 5470e81f-8fc5-4e01-9c5d-41689344e47a 5cb345f5d9a2a66eb9bdb243d54cdc93 { 'aliquot_tag': 'ALQ_e9e96a1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01338.RNA-Seq.R2_L005.A C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 180516_UNC31-K00269_0130_BHV22JBBXX_TTAGGC_S17_L005_R2_001.fastq.gz 4195077773 FASTQ R2_L005 unaligned CPTAC3 07c5cb0b-e1c0-4fd9-bb00-2819c4c2c5e0 cfd2029fca5a0f32a0b233130d51bd7b { 'aliquot_tag': 'ALQ_b161f97a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01338.RNA-Seq.R2_L008.T C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 171129_UNC32-K00270_0066_AHM25VBBXX_ATTCCT_S23_L008_R2_001.fastq.gz 4490986247 FASTQ R2_L008 unaligned CPTAC3 45bee5df-929e-442e-bbe8-2e2896674e63 6f80c879add3c41b55aebc5e06b921a4 { 'aliquot_tag': 'ALQ_e9e96a1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01338.RNA-Seq.transcriptome.A.hg38 C3N-01338 HNSCC RNA-Seq tissue_normal CPT0088080009 4599fd14-5873-418e-8997-452f2942faf4.rna_seq.transcriptome.gdc_realn.bam 12783838936 BAM transcriptome harmonized CPTAC3 2d877a80-9285-4aad-b07e-4b13f6149fa1 f892ac1688a69ee5859c30f6bc7564eb { 'aliquot_tag': 'ALQ_b161f97a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01338.RNA-Seq.transcriptome.T.hg38 C3N-01338 HNSCC RNA-Seq tumor CPT0088060007 d2cba871-5d89-474b-9adb-dbdb83a5b85f.rna_seq.transcriptome.gdc_realn.bam 12287465284 BAM transcriptome harmonized CPTAC3 cbeb6fe4-616c-41b4-80fd-750576e0b1d5 a3ac8722df28fd43e4801d35ecc3d405 { 'aliquot_tag': 'ALQ_e9e96a1c', 'gdc_sample_type': 'Primary Tumor' } C3N-01338.WGS.N C3N-01338 HNSCC WGS blood_normal CPT0088120002 CPT0088120002.WholeGenome.RP-1303.bam 85666598601 BAM aligned CPTAC3 b82fceaa-3807-4c23-a3ce-a7ee3cdc75ee 88f0522bcfc7007543f64c8e0f9227f1 { 'aliquot_tag': 'ALQ_a75febf6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25089,9 +27004,9 @@ C3N-01339.MethArray.Red.T C3N-01339 HNSCC Methylation Array tumor CPT0094490010 C3N-01339.miRNA-Seq.T C3N-01339 HNSCC miRNA-Seq tumor CPT0094490007 180828_UNC32-K00270_0112_AHWTLNBBXX_CTCAGA_S46_L007_R1_001.unaln.bam 214310804 BAM unaligned CPTAC3 004bce29-28f2-40d7-aa25-0da3ffdb9037 7ca5075fec107a26a7d30538a7522857 { 'aliquot_tag': 'ALQ_fb22d531', 'gdc_sample_type': 'Primary Tumor' } C3N-01339.miRNA-Seq.T.hg38 C3N-01339 HNSCC miRNA-Seq tumor CPT0094490007 73c5b03a-8449-445e-a74a-a28a3a4679e7_mirnaseq_gdc_realn.bam 242075044 BAM harmonized CPTAC3 c7bd1260-a615-424c-be99-6658fab2a0f1 3f5cad72aac996fafc27edf4e59c451f { 'aliquot_tag': 'ALQ_fb22d531', 'gdc_sample_type': 'Primary Tumor' } C3N-01339.RNA-Seq.chimeric.T.hg38 C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 e1b843c3-5c6c-4078-94eb-aa59ae4237cd.rna_seq.chimeric.gdc_realn.bam 47034486 BAM chimeric harmonized CPTAC3 80e3a76b-f7bd-4c82-a776-fa3f886ead13 c37d2e91c4bcb8e5216f5a2547afc28b { 'aliquot_tag': 'ALQ_fb22d531', 'gdc_sample_type': 'Primary Tumor' } -C3N-01339.RNA-Seq.genomic.T.hg38 C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 e1b843c3-5c6c-4078-94eb-aa59ae4237cd.rna_seq.genomic.gdc_realn.bam 9534159671 BAM genomic harmonized CPTAC3 c9c46f6b-6b17-4a10-a21e-95bb4a86dd25 410f41d8aeb07ec92b237ab5a0dbcb24 { 'aliquot_tag': 'ALQ_fb22d531', 'gdc_sample_type': 'Primary Tumor' } -C3N-01339.RNA-Seq.R1_L001.T C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L001_R1_001.fastq.gz 4660955404 FASTQ R1_L001 unaligned CPTAC3 d4987b3c-be5d-487a-9e52-74ea45ad64db 902d9245f4d6b3c0baa035b80116abfa { 'aliquot_tag': 'ALQ_fb22d531', 'gdc_sample_type': 'Primary Tumor' } -C3N-01339.RNA-Seq.R2_L001.T C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L001_R2_001.fastq.gz 4700114368 FASTQ R2_L001 unaligned CPTAC3 9390e81d-ac41-4618-b97c-d69633ef5669 b9e0a4e0b80847fba0074d02f313cc2a { 'aliquot_tag': 'ALQ_fb22d531', 'gdc_sample_type': 'Primary Tumor' } +C3N-01339.RNA-Seq.genomic.T.hg38 C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 e1b843c3-5c6c-4078-94eb-aa59ae4237cd.rna_seq.genomic.gdc_realn.bam 9534159671 BAM genomic harmonized CPTAC3 247989f8-45fc-4838-ac2a-73cb68b27c9c 410f41d8aeb07ec92b237ab5a0dbcb24 { 'aliquot_tag': 'ALQ_fb22d531', 'gdc_sample_type': 'Primary Tumor' } +C3N-01339.RNA-Seq.R1_L001.T C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L001_R1_001.fastq.gz 4660955404 FASTQ R1_L001 unaligned CPTAC3 d4987b3c-be5d-487a-9e52-74ea45ad64db 902d9245f4d6b3c0baa035b80116abfa { 'aliquot_tag': 'ALQ_fb22d531', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01339.RNA-Seq.R2_L001.T C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 171129_UNC32-K00270_0067_BHN2N5BBXX_CCGTCC_S4_L001_R2_001.fastq.gz 4700114368 FASTQ R2_L001 unaligned CPTAC3 9390e81d-ac41-4618-b97c-d69633ef5669 b9e0a4e0b80847fba0074d02f313cc2a { 'aliquot_tag': 'ALQ_fb22d531', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-01339.RNA-Seq.transcriptome.T.hg38 C3N-01339 HNSCC RNA-Seq tumor CPT0094490007 e1b843c3-5c6c-4078-94eb-aa59ae4237cd.rna_seq.transcriptome.gdc_realn.bam 9838748810 BAM transcriptome harmonized CPTAC3 152dfbbc-4d45-4f36-bc80-55d45ec8c84e 6e8e3090e71e22a8fc7b3a244deb1308 { 'aliquot_tag': 'ALQ_fb22d531', 'gdc_sample_type': 'Primary Tumor' } C3N-01339.WGS.N C3N-01339 HNSCC WGS blood_normal CPT0094550002 CPT0094550002.WholeGenome.RP-1303.bam 62208177802 BAM aligned CPTAC3 0530dcad-861d-4494-8eba-a086a9dda0e0 8585336c161d09a8e810651f646fbeb8 { 'aliquot_tag': 'ALQ_85e41f1a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01339.WGS.N.hg38 C3N-01339 HNSCC WGS blood_normal CPT0094550002 4b2e3dab-1455-429e-b205-85434e5e888c_wgs_gdc_realn.bam 90873281871 BAM harmonized CPTAC3 ee89ec01-4041-4e1a-bd54-d8c411c09192 30a299fc492cf75ee057626c68d57d9c { 'aliquot_tag': 'ALQ_85e41f1a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25109,12 +27024,12 @@ C3N-01340.miRNA-Seq.T C3N-01340 HNSCC miRNA-Seq tumor CPT0094560010 190228_UNC32 C3N-01340.miRNA-Seq.T.hg38 C3N-01340 HNSCC miRNA-Seq tumor CPT0094560010 092346de-1de4-4b5b-ab6d-8ade032e45c3_mirnaseq_gdc_realn.bam 257946927 BAM harmonized CPTAC3 ef7cdf3a-6305-414b-a3f1-c596e78cbebc df91153d54b1908d56be4bde539078f7 { 'aliquot_tag': 'ALQ_355135a7', 'gdc_sample_type': 'Primary Tumor' } C3N-01340.RNA-Seq.chimeric.A.hg38 C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 35fd5fd5-d4dc-45cd-b1df-ed09ae8525cc.rna_seq.chimeric.gdc_realn.bam 264796781 BAM chimeric harmonized CPTAC3 ae92f91d-cd12-4b7d-ad80-fea6cf4e8666 ab1d409979f20e7b3e495e160cd95d95 { 'aliquot_tag': 'ALQ_7a191fb2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01340.RNA-Seq.chimeric.T.hg38 C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 0c6ad72e-72d0-485d-ad3b-5d14b5df508d.rna_seq.chimeric.gdc_realn.bam 242562339 BAM chimeric harmonized CPTAC3 555cd108-8b85-431f-8693-20d64df8d2da 4a05040a2cd854ae216462cacaf12fac { 'aliquot_tag': 'ALQ_355135a7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01340.RNA-Seq.genomic.A.hg38 C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 35fd5fd5-d4dc-45cd-b1df-ed09ae8525cc.rna_seq.genomic.gdc_realn.bam 7970500321 BAM genomic harmonized CPTAC3 4b7f48b4-3268-49cd-b677-25dd36280e2d f9ffdda9651e042d4af9338dfe543fee { 'aliquot_tag': 'ALQ_7a191fb2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01340.RNA-Seq.genomic.T.hg38 C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 0c6ad72e-72d0-485d-ad3b-5d14b5df508d.rna_seq.genomic.gdc_realn.bam 7334324683 BAM genomic harmonized CPTAC3 72d6d434-bd5e-4ea6-8c11-213e590b1d16 126ccc4be742822a99f8a3f4ac2e9196 { 'aliquot_tag': 'ALQ_355135a7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01340.RNA-Seq.R1_L002.T C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 3258123878 FASTQ R1_L002 unaligned CPTAC3 0f4b80f9-5b69-4ea2-be2f-4c748c8d1ee5 d66a7b1ef0ac32d45a78cc921dad356c { 'aliquot_tag': 'ALQ_355135a7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01340.RNA-Seq.R1_L003.A C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 190215_UNC32-K00270_0147_AH3VGHBBXY_GGCTAC_S10_L003_R1_001.fastq.gz 3595538230 FASTQ R1_L003 unaligned CPTAC3 8f2054cf-f6ab-4c9f-98a4-5e1c95ce1b2b 4815092e49e2ec657b7eeb7bc80df09b { 'aliquot_tag': 'ALQ_7a191fb2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01340.RNA-Seq.R2_L002.T C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 3613851437 FASTQ R2_L002 unaligned CPTAC3 4f6f6cf6-20b6-40b2-97c3-bfc6bad96682 897c1432c2eb05ba537c0b83a770e29e { 'aliquot_tag': 'ALQ_355135a7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01340.RNA-Seq.R2_L003.A C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 190215_UNC32-K00270_0147_AH3VGHBBXY_GGCTAC_S10_L003_R2_001.fastq.gz 4099942149 FASTQ R2_L003 unaligned CPTAC3 8db1bf52-ab44-4d3a-82cd-c265950b4a9d 1dccbad693fea02841141c310f7a7e3c { 'aliquot_tag': 'ALQ_7a191fb2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01340.RNA-Seq.genomic.A.hg38 C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 35fd5fd5-d4dc-45cd-b1df-ed09ae8525cc.rna_seq.genomic.gdc_realn.bam 7970500321 BAM genomic harmonized CPTAC3 5b19bcb8-b5a2-4979-801e-3234c34bbab2 f9ffdda9651e042d4af9338dfe543fee { 'aliquot_tag': 'ALQ_7a191fb2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01340.RNA-Seq.genomic.T.hg38 C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 0c6ad72e-72d0-485d-ad3b-5d14b5df508d.rna_seq.genomic.gdc_realn.bam 7334324683 BAM genomic harmonized CPTAC3 e68e2df9-1077-4b3d-bed0-fc0cd63fabe0 126ccc4be742822a99f8a3f4ac2e9196 { 'aliquot_tag': 'ALQ_355135a7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01340.RNA-Seq.R1_L002.T C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 3258123878 FASTQ R1_L002 unaligned CPTAC3 0f4b80f9-5b69-4ea2-be2f-4c748c8d1ee5 d66a7b1ef0ac32d45a78cc921dad356c { 'aliquot_tag': 'ALQ_355135a7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01340.RNA-Seq.R1_L003.A C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 190215_UNC32-K00270_0147_AH3VGHBBXY_GGCTAC_S10_L003_R1_001.fastq.gz 3595538230 FASTQ R1_L003 unaligned CPTAC3 8f2054cf-f6ab-4c9f-98a4-5e1c95ce1b2b 4815092e49e2ec657b7eeb7bc80df09b { 'aliquot_tag': 'ALQ_7a191fb2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01340.RNA-Seq.R2_L002.T C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 3613851437 FASTQ R2_L002 unaligned CPTAC3 4f6f6cf6-20b6-40b2-97c3-bfc6bad96682 897c1432c2eb05ba537c0b83a770e29e { 'aliquot_tag': 'ALQ_355135a7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01340.RNA-Seq.R2_L003.A C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 190215_UNC32-K00270_0147_AH3VGHBBXY_GGCTAC_S10_L003_R2_001.fastq.gz 4099942149 FASTQ R2_L003 unaligned CPTAC3 8db1bf52-ab44-4d3a-82cd-c265950b4a9d 1dccbad693fea02841141c310f7a7e3c { 'aliquot_tag': 'ALQ_7a191fb2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3N-01340.RNA-Seq.transcriptome.A.hg38 C3N-01340 HNSCC RNA-Seq tissue_normal CPT0094580006 35fd5fd5-d4dc-45cd-b1df-ed09ae8525cc.rna_seq.transcriptome.gdc_realn.bam 10413987936 BAM transcriptome harmonized CPTAC3 e61042ce-d0a9-4db9-8a28-595f9aeeee66 3c62a0fd2d67067657b301d47b068f48 { 'aliquot_tag': 'ALQ_7a191fb2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01340.RNA-Seq.transcriptome.T.hg38 C3N-01340 HNSCC RNA-Seq tumor CPT0094560010 0c6ad72e-72d0-485d-ad3b-5d14b5df508d.rna_seq.transcriptome.gdc_realn.bam 8860928984 BAM transcriptome harmonized CPTAC3 0d864e06-339f-43de-976b-c663922c755d 047bf2a42ec560c6d8650ff93f3b3bda { 'aliquot_tag': 'ALQ_355135a7', 'gdc_sample_type': 'Primary Tumor' } C3N-01340.WGS.N C3N-01340 HNSCC WGS blood_normal CPT0094620002 CPT0094620002.WholeGenome.RP-1303.bam 60287897320 BAM aligned CPTAC3 61872ecc-345c-441c-b4e4-1319ba3eed5e 84a557ad6dee51723d4fb2e769e91f61 { 'aliquot_tag': 'ALQ_b150b1a4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25129,13 +27044,16 @@ C3N-01341.MethArray.Green.T C3N-01341 UCEC Methylation Array tumor CPT0095280009 C3N-01341.MethArray.Red.T C3N-01341 UCEC Methylation Array tumor CPT0095280009 202234380099_R04C01_Red.idat 13676231 IDAT Red NA CPTAC3 891aed95-1da4-49a8-b3c2-bc7b16e54940 07147ea4acef00505b0cb64710340690 { 'aliquot_tag': 'ALQ_51d4392f', 'gdc_sample_type': 'Primary Tumor' } C3N-01341.miRNA-Seq.T C3N-01341 UCEC miRNA-Seq tumor CPT0095280006 180828_UNC32-K00270_0112_AHWTLNBBXX_GACGAC_S47_L007_R1_001.unaln.bam 236568056 BAM unaligned CPTAC3 721d8023-0074-4b11-9c54-c06a6c21d738 fa76f775cc0012e9fb6a17f125fb423d { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor' } C3N-01341.miRNA-Seq.T.hg38 C3N-01341 UCEC miRNA-Seq tumor CPT0095280006 8ea25dab-d3b4-4d1b-913f-081255ae905b_mirnaseq_gdc_realn.bam 268088034 BAM harmonized CPTAC3 5b4a97a2-23ee-4005-867f-7013a932820b 3eae6b693ab7d4ee0a30f8b3d33fc72c { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor' } -C3N-01341.RNA-Seq.chimeric.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 2eee2419-3ce8-4d1b-87ea-a2c89de60666.rna_seq.chimeric.gdc_realn.bam 34395550 BAM chimeric harmonized CPTAC3 b5987d5a-1f02-4846-b075-48bf746cbbe9 4caf915bd8a5ef20d531207955051253 { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor' } -C3N-01341.RNA-Seq.genomic.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 2eee2419-3ce8-4d1b-87ea-a2c89de60666.rna_seq.genomic.gdc_realn.bam 8743499553 BAM genomic harmonized CPTAC3 4c75fc35-458a-4792-8030-1e236931ea65 a7b657e420e01ef8a8fc581aa3da1bf7 { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor' } -C3N-01341.RNA-Seq.R1_L008.T C3N-01341 UCEC RNA-Seq tumor CPT0095280006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L008_R1_001.fastq.gz 4375979214 FASTQ R1_L008 unaligned CPTAC3 235d5a77-136b-493b-8701-7f842a4394ff 8ce698a804bebec2c8dc63191d4c7b3d { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor' } -C3N-01341.RNA-Seq.R1_.T C3N-01341 UCEC RNA-Seq tumor CPT0351140001 20210729_P3_A5_WB7988-Plate3_S5_R1_001.fastq.gz 4892694742 FASTQ R1_ unaligned CPTAC3 574651b1-5a29-46a0-8426-bc2847b406b2 4c2dd3cce52dc89539b73099b7b09d96 { 'aliquot_tag': 'ALQ_8606232b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01341.RNA-Seq.R2_L008.T C3N-01341 UCEC RNA-Seq tumor CPT0095280006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L008_R2_001.fastq.gz 4726788363 FASTQ R2_L008 unaligned CPTAC3 bebef409-9736-49b2-b3d6-4f504b370e21 4de08d3ad5c2a67d0907326b2c41fec5 { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor' } -C3N-01341.RNA-Seq.R2_.T C3N-01341 UCEC RNA-Seq tumor CPT0351140001 20210729_P3_A5_WB7988-Plate3_S5_R2_001.fastq.gz 5107520532 FASTQ R2_ unaligned CPTAC3 834e4efa-7bf9-4d32-bb84-35685982a92e 4458b31047a46c40b0c244d91f0a68a2 { 'aliquot_tag': 'ALQ_8606232b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01341.RNA-Seq.transcriptome.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 2eee2419-3ce8-4d1b-87ea-a2c89de60666.rna_seq.transcriptome.gdc_realn.bam 10302346861 BAM transcriptome harmonized CPTAC3 3ee83618-0fd2-4721-a607-dff256c5212f 0fc9b5228769fe7563659840b54e6ca8 { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor' } +C3N-01341.RNA-Seq.chimeric.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 d3ff2635-462c-4687-83cc-bc478d09f5b8.rna_seq.chimeric.gdc_realn.bam 34399903 BAM chimeric harmonized CPTAC3 03d105c1-98a7-448d-8067-69da79c3e9cc e1ff52e174667eed5e29e63aeee2cc9d { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor' } +C3N-01341.RNA-Seq.chimeric.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0351140001 7db387d9-0f03-48ea-97ce-1283730e1b69.rna_seq.chimeric.gdc_realn.bam 179374267 BAM chimeric harmonized CPTAC3 6fec07f3-3527-405f-ba13-6840d25fa902 bdbdc45822c72a826b166b267f05ef87 { 'aliquot_tag': 'ALQ_8606232b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01341.RNA-Seq.genomic.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 d3ff2635-462c-4687-83cc-bc478d09f5b8.rna_seq.genomic.gdc_realn.bam 8744525964 BAM genomic harmonized CPTAC3 84d69687-508c-47ec-9a52-b93a3b372b89 88e1481ce0ccfe98758318bdc9a06611 { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor' } +C3N-01341.RNA-Seq.genomic.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0351140001 7db387d9-0f03-48ea-97ce-1283730e1b69.rna_seq.genomic.gdc_realn.bam 8142416728 BAM genomic harmonized CPTAC3 a3582b04-4408-480b-9747-3757549c9621 3823393cd1caba43d1a6bd8a906783d9 { 'aliquot_tag': 'ALQ_8606232b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01341.RNA-Seq.R1_L008.T C3N-01341 UCEC RNA-Seq tumor CPT0095280006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L008_R1_001.fastq.gz 4375979214 FASTQ R1_L008 unaligned CPTAC3 235d5a77-136b-493b-8701-7f842a4394ff 8ce698a804bebec2c8dc63191d4c7b3d { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01341.RNA-Seq.R2_L008.T C3N-01341 UCEC RNA-Seq tumor CPT0095280006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L008_R2_001.fastq.gz 4726788363 FASTQ R2_L008 unaligned CPTAC3 bebef409-9736-49b2-b3d6-4f504b370e21 4de08d3ad5c2a67d0907326b2c41fec5 { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01341.RNA-Seq.T C3N-01341 UCEC RNA-Seq tumor CPT0351140001 20210729_P3_A5_WB7988-Plate3_S5_R1_001.fastq.gz 4892694742 FASTQ unaligned CPTAC3 574651b1-5a29-46a0-8426-bc2847b406b2 4c2dd3cce52dc89539b73099b7b09d96 +C3N-01341.RNA-Seq.T C3N-01341 UCEC RNA-Seq tumor CPT0351140001 20210729_P3_A5_WB7988-Plate3_S5_R2_001.fastq.gz 5107520532 FASTQ unaligned CPTAC3 834e4efa-7bf9-4d32-bb84-35685982a92e 4458b31047a46c40b0c244d91f0a68a2 +C3N-01341.RNA-Seq.transcriptome.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0095280006 d3ff2635-462c-4687-83cc-bc478d09f5b8.rna_seq.transcriptome.gdc_realn.bam 11874644003 BAM transcriptome harmonized CPTAC3 a6ff538a-3939-4798-866d-8f3307f9f4dd c6c2a13906c824ba0389bfc317e9f155 { 'aliquot_tag': 'ALQ_c16b24be', 'gdc_sample_type': 'Primary Tumor' } +C3N-01341.RNA-Seq.transcriptome.T.hg38 C3N-01341 UCEC RNA-Seq tumor CPT0351140001 7db387d9-0f03-48ea-97ce-1283730e1b69.rna_seq.transcriptome.gdc_realn.bam 3764831648 BAM transcriptome harmonized CPTAC3 47733b9b-2dc9-4789-8d59-51ba0dad55ea b99668ccdcdac8d281063b8474cf07bb { 'aliquot_tag': 'ALQ_8606232b', 'gdc_sample_type': 'Primary Tumor' } C3N-01341.WGS.N C3N-01341 UCEC WGS blood_normal CPT0095300002 CPT0095300002.WholeGenome.RP-1303.bam 55556717642 BAM aligned CPTAC3 53ac1b4c-87c1-4f7c-90ce-e752bc79d88e fbf30ad5484ba40b17d5b03e1a3a20c7 { 'aliquot_tag': 'ALQ_3d2a78c3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01341.WGS.N.hg38 C3N-01341 UCEC WGS blood_normal CPT0095300002 51ed66a7-3a92-459f-ad86-ef990fa69bd7_wgs_gdc_realn.bam 82441890092 BAM harmonized CPTAC3 0d40e5ec-09dc-49e5-8e4d-b89804ce3731 b8c7ab42e432cef08981926db7019408 { 'aliquot_tag': 'ALQ_3d2a78c3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01341.WGS.T C3N-01341 UCEC WGS tumor CPT0095280009 CPT0095280009.WholeGenome.RP-1303.bam 67136736595 BAM aligned CPTAC3 0b74d6a8-dbd8-4c2c-a0c4-b040ed1f0d5a 68361d6be81d8951bfe0a4c566db173f { 'aliquot_tag': 'ALQ_51d4392f', 'gdc_sample_type': 'Primary Tumor' } @@ -25148,13 +27066,16 @@ C3N-01342.MethArray.Green.T C3N-01342 UCEC Methylation Array tumor CPT0088140009 C3N-01342.MethArray.Red.T C3N-01342 UCEC Methylation Array tumor CPT0088140009 202178770006_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 dd74d2e3-e4a6-41c9-918c-aa33602eee66 821835b5b0a945afa6a6a6ffec49d5ef { 'aliquot_tag': 'ALQ_bfcdc7de', 'gdc_sample_type': 'Primary Tumor' } C3N-01342.miRNA-Seq.T C3N-01342 UCEC miRNA-Seq tumor CPT0088140006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTTGA_S8_L008_R1_001.unaln.bam 163630286 BAM unaligned CPTAC3 1c0ebe4c-4de4-4307-8a19-92396cd8712f 0b35bfe3099bc823847ee8b0f9afd5ef { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor' } C3N-01342.miRNA-Seq.T.hg38 C3N-01342 UCEC miRNA-Seq tumor CPT0088140006 8e30b22d-3e6b-4694-97fe-983b60ecb7cd_mirnaseq_gdc_realn.bam 182133218 BAM harmonized CPTAC3 ebe1de59-e6ba-4554-a47b-d762da2aef66 507a3444b2a4e726a250445d223a94f4 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01342.RNA-Seq.chimeric.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 6f6adc68-7351-492b-a8f1-8ca6862f56d0.rna_seq.chimeric.gdc_realn.bam 32108592 BAM chimeric harmonized CPTAC3 e42dc6e7-08cf-47a8-b9cf-12b5c6bbc377 b0dd31a45668160b9caee3cd3deed139 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01342.RNA-Seq.genomic.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 6f6adc68-7351-492b-a8f1-8ca6862f56d0.rna_seq.genomic.gdc_realn.bam 8859485101 BAM genomic harmonized CPTAC3 598ca9d1-4dfe-4b23-92a9-0f6661dacc75 29fe48613103def1320576e179b42fd1 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01342.RNA-Seq.R1_L001.T C3N-01342 UCEC RNA-Seq tumor CPT0088140006 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4233820853 FASTQ R1_L001 unaligned CPTAC3 db49aa38-848e-4196-aa4c-bad8fdc9692f c14ce93d33b1173bdbf2edaf836ef452 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01342.RNA-Seq.R1_.T C3N-01342 UCEC RNA-Seq tumor CPT0351160001 20210729_P3_H3_WB7988-Plate3_S87_R1_001.fastq.gz 6595624111 FASTQ R1_ unaligned CPTAC3 7db1340c-3d27-4343-b688-2ec1165435fc d84cc0d8f2e1bfe224b396e3e2c8f632 { 'aliquot_tag': 'ALQ_fcc6704b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01342.RNA-Seq.R2_L001.T C3N-01342 UCEC RNA-Seq tumor CPT0088140006 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4755674091 FASTQ R2_L001 unaligned CPTAC3 d617ecc2-eae5-4cbe-a806-f74effc0b0ad 69accc4aef8c857a0e586d6e92a25032 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01342.RNA-Seq.R2_.T C3N-01342 UCEC RNA-Seq tumor CPT0351160001 20210729_P3_H3_WB7988-Plate3_S87_R2_001.fastq.gz 6870942105 FASTQ R2_ unaligned CPTAC3 e26318b0-5bd8-40f4-8b79-4126ef228eee bc0e5d4da1a096e87605f8cc1f97d8ca { 'aliquot_tag': 'ALQ_fcc6704b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01342.RNA-Seq.transcriptome.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 6f6adc68-7351-492b-a8f1-8ca6862f56d0.rna_seq.transcriptome.gdc_realn.bam 10771564703 BAM transcriptome harmonized CPTAC3 1ffa3444-ebff-4f39-86dd-b12a926d830c 7c1d2b2fafd10e215cd07c5a370a8096 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01342.RNA-Seq.chimeric.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 d658c5e7-1fdd-45eb-bfb1-875e71e0dee2.rna_seq.chimeric.gdc_realn.bam 32098278 BAM chimeric harmonized CPTAC3 ddd9161d-0b5c-42f0-ab0f-f2b01234f2c4 c3cc1ab4c80e5a33cf5de741171366e8 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01342.RNA-Seq.chimeric.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0351160001 04e7d8b3-4e1e-4a1e-acd1-4612936b3056.rna_seq.chimeric.gdc_realn.bam 242434962 BAM chimeric harmonized CPTAC3 5f1c9b6f-d7b2-41a9-8d8f-548277143233 bd4bf752c4452ca2ed144047f037dab2 { 'aliquot_tag': 'ALQ_fcc6704b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01342.RNA-Seq.genomic.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 d658c5e7-1fdd-45eb-bfb1-875e71e0dee2.rna_seq.genomic.gdc_realn.bam 8860519598 BAM genomic harmonized CPTAC3 0211cb27-4b7f-4b7d-8e66-79d15c6c1aaf 4b7d8f29c98d79d288611f9e487114b8 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01342.RNA-Seq.genomic.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0351160001 04e7d8b3-4e1e-4a1e-acd1-4612936b3056.rna_seq.genomic.gdc_realn.bam 10637180413 BAM genomic harmonized CPTAC3 ebd9a848-e1e8-4ae1-9d36-714352b83b91 4886373e453f6d747d86318e04be9a87 { 'aliquot_tag': 'ALQ_fcc6704b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01342.RNA-Seq.R1_L001.T C3N-01342 UCEC RNA-Seq tumor CPT0088140006 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L001_R1_001.fastq.gz 4233820853 FASTQ R1_L001 unaligned CPTAC3 db49aa38-848e-4196-aa4c-bad8fdc9692f c14ce93d33b1173bdbf2edaf836ef452 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01342.RNA-Seq.R2_L001.T C3N-01342 UCEC RNA-Seq tumor CPT0088140006 170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L001_R2_001.fastq.gz 4755674091 FASTQ R2_L001 unaligned CPTAC3 d617ecc2-eae5-4cbe-a806-f74effc0b0ad 69accc4aef8c857a0e586d6e92a25032 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01342.RNA-Seq.T C3N-01342 UCEC RNA-Seq tumor CPT0351160001 20210729_P3_H3_WB7988-Plate3_S87_R1_001.fastq.gz 6595624111 FASTQ unaligned CPTAC3 7db1340c-3d27-4343-b688-2ec1165435fc d84cc0d8f2e1bfe224b396e3e2c8f632 +C3N-01342.RNA-Seq.T C3N-01342 UCEC RNA-Seq tumor CPT0351160001 20210729_P3_H3_WB7988-Plate3_S87_R2_001.fastq.gz 6870942105 FASTQ unaligned CPTAC3 e26318b0-5bd8-40f4-8b79-4126ef228eee bc0e5d4da1a096e87605f8cc1f97d8ca +C3N-01342.RNA-Seq.transcriptome.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0088140006 d658c5e7-1fdd-45eb-bfb1-875e71e0dee2.rna_seq.transcriptome.gdc_realn.bam 12420669315 BAM transcriptome harmonized CPTAC3 14a6bc31-7e89-42bc-aca0-4f9a4435db96 8ac0f01252a30de0be0582e9564cc3a0 { 'aliquot_tag': 'ALQ_2f72da4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01342.RNA-Seq.transcriptome.T.hg38 C3N-01342 UCEC RNA-Seq tumor CPT0351160001 04e7d8b3-4e1e-4a1e-acd1-4612936b3056.rna_seq.transcriptome.gdc_realn.bam 5045320309 BAM transcriptome harmonized CPTAC3 33554b3b-4a6d-4dc4-8331-dcf5dceb0684 98af3d5844e218e1e8fcfd91e11732a9 { 'aliquot_tag': 'ALQ_fcc6704b', 'gdc_sample_type': 'Primary Tumor' } C3N-01342.WGS.N C3N-01342 UCEC WGS blood_normal CPT0088170002 CPT0088170002.WholeGenome.RP-1303.bam 70245723844 BAM aligned CPTAC3 7d6e4ddb-df25-4029-9242-cbec066667e5 807a16b9b095c38423b1f463540b63ff { 'aliquot_tag': 'ALQ_6fbf6486', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01342.WGS.N.hg38 C3N-01342 UCEC WGS blood_normal CPT0088170002 34c0a262-8e89-4e5a-9b3f-562178463514_gdc_realn.bam 106409010851 BAM harmonized CPTAC3 9c5e7c89-800c-43bf-b746-c0ca213c1d50 d9e21e4e276cfe797e45f5f0baeffb00 { 'aliquot_tag': 'ALQ_6fbf6486', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01342.WGS.T C3N-01342 UCEC WGS tumor CPT0088140009 CPT0088140009.WholeGenome.RP-1303.bam 67228515696 BAM aligned CPTAC3 eaf78e58-9581-4e83-84cb-793ce9ca926a ee0d1ef4d904261a266c63e6815d2f52 { 'aliquot_tag': 'ALQ_bfcdc7de', 'gdc_sample_type': 'Primary Tumor' } @@ -25171,18 +27092,21 @@ C3N-01344.miRNA-Seq.A C3N-01344 UCEC miRNA-Seq tissue_normal CPT0116450009 19013 C3N-01344.miRNA-Seq.A.hg38 C3N-01344 UCEC miRNA-Seq tissue_normal CPT0116450009 b34190a6-a785-480b-bee9-5f3ca67b04df_mirnaseq_gdc_realn.bam 192283298 BAM harmonized CPTAC3 7efef1f6-750c-42c8-8dbc-57eb6c0a96e1 bbe591330abe68fd8e53e63d90843771 { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01344.miRNA-Seq.T C3N-01344 UCEC miRNA-Seq tumor CPT0116340010 190108_UNC31-K00269_0176_AHYGLVBBXX_TCATTC_S45_L003_R1_001.unaln.bam 236362337 BAM unaligned CPTAC3 20154c43-b31c-44bd-88dc-f432bdded793 e6b235a3a3d14b868c3c928ff26cce40 { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor' } C3N-01344.miRNA-Seq.T.hg38 C3N-01344 UCEC miRNA-Seq tumor CPT0116340010 067bfd9e-f722-4b1f-887e-40eac88cb4eb_mirnaseq_gdc_realn.bam 260617130 BAM harmonized CPTAC3 e8d491f7-869f-48a1-95d7-03de57431235 ad1cf5598fce7fe232db4bcadd323482 { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor' } -C3N-01344.RNA-Seq.chimeric.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 e8cbfc8e-9418-4460-972e-6b6875926aab.rna_seq.chimeric.gdc_realn.bam 34306454 BAM chimeric harmonized CPTAC3 3bb5b2d7-1177-43a2-be4c-76a8c513c2cb 7c67130bb76bff21c8f73c457be5537b { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01344.RNA-Seq.chimeric.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 35cf047a-345b-4324-a6e8-a6310a2560b9.rna_seq.chimeric.gdc_realn.bam 33564208 BAM chimeric harmonized CPTAC3 34928cf5-6fa0-4144-bdaf-d7aa250e18c9 4492dbbc932977bfe3d634596f6be8eb { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor' } -C3N-01344.RNA-Seq.genomic.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 e8cbfc8e-9418-4460-972e-6b6875926aab.rna_seq.genomic.gdc_realn.bam 8823868166 BAM genomic harmonized CPTAC3 d46be64f-d299-42a9-bf30-8adca5a2e406 ad1b2d5c4ed5088a83503ad5d77abfdd { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01344.RNA-Seq.genomic.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 35cf047a-345b-4324-a6e8-a6310a2560b9.rna_seq.genomic.gdc_realn.bam 9066449411 BAM genomic harmonized CPTAC3 349845b0-58db-4e21-a0b0-961ad927f3c7 7e3561dc1fb9ae24d0e1e99a1805ba6b { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor' } -C3N-01344.RNA-Seq.R1_L005.A C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L005_R1_001.fastq.gz 3940056211 FASTQ R1_L005 unaligned CPTAC3 e3d24a9d-b91b-448f-b4d7-585e2078ac58 3a392c78be596c1865e15220f17462ee { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01344.RNA-Seq.R1_L007.T C3N-01344 UCEC RNA-Seq tumor CPT0116340010 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L007_R1_001.fastq.gz 4190146073 FASTQ R1_L007 unaligned CPTAC3 6c279227-c3ea-429b-8f27-999e61e49213 3294aa0c3a68d7b9803d5ad238c28b9c { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor' } -C3N-01344.RNA-Seq.R1_.T C3N-01344 UCEC RNA-Seq tumor CPT0351170001 20210729_P3_F12_WB7988-Plate3_S72_R1_001.fastq.gz 1846518862 FASTQ R1_ unaligned CPTAC3 d10e3e04-1e75-4601-aca5-1ca201432a1a 7250f8d3da7bd08e90af9d59860c5435 { 'aliquot_tag': 'ALQ_c1a659fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01344.RNA-Seq.R2_L005.A C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L005_R2_001.fastq.gz 4416845317 FASTQ R2_L005 unaligned CPTAC3 147ef354-4b8e-4ca4-9203-ca115de6f3ad ec3baf4082bad7ff844402dc22cff080 { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01344.RNA-Seq.R2_L007.T C3N-01344 UCEC RNA-Seq tumor CPT0116340010 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L007_R2_001.fastq.gz 4442762871 FASTQ R2_L007 unaligned CPTAC3 6b92fce0-bf2f-4f35-ac1a-b5e15559788d 7289996e7835ceaec23a880ff0c078da { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor' } -C3N-01344.RNA-Seq.R2_.T C3N-01344 UCEC RNA-Seq tumor CPT0351170001 20210729_P3_F12_WB7988-Plate3_S72_R2_001.fastq.gz 2043043260 FASTQ R2_ unaligned CPTAC3 b094184c-2b14-43f0-8693-1ad718349f18 35d8c27e438008115db6df73f5a5686c { 'aliquot_tag': 'ALQ_c1a659fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01344.RNA-Seq.transcriptome.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 e8cbfc8e-9418-4460-972e-6b6875926aab.rna_seq.transcriptome.gdc_realn.bam 9824525140 BAM transcriptome harmonized CPTAC3 108c080e-f881-4163-a9f6-84b5f28cdbcd 10403be5326ad94a1588561d05d91257 { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01344.RNA-Seq.transcriptome.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 35cf047a-345b-4324-a6e8-a6310a2560b9.rna_seq.transcriptome.gdc_realn.bam 9734928923 BAM transcriptome harmonized CPTAC3 c3c2ebb1-a0c2-4f3c-be82-f98d6f0fd5b5 f3a9d9a46390c0cf279b1fc85d58aa50 { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor' } +C3N-01344.RNA-Seq.chimeric.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 aea37943-77e5-4c33-8f33-6ee576ddcaf9.rna_seq.chimeric.gdc_realn.bam 34289602 BAM chimeric harmonized CPTAC3 7bc55348-8d40-4665-8446-1f83d18dc1fb f39cf8afed4499aa5cf8bc35ad8935af { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01344.RNA-Seq.chimeric.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 c411b576-61a8-4e39-8fe5-a87018f3b769.rna_seq.chimeric.gdc_realn.bam 33563209 BAM chimeric harmonized CPTAC3 bdab93ca-86dd-43df-b41e-e0639e32059e e1f28032b38fc8dd7f8654127ace0d17 { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor' } +C3N-01344.RNA-Seq.chimeric.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0351170001 a353cf04-ed98-4d8d-9815-7c5b69004b0d.rna_seq.chimeric.gdc_realn.bam 10853187 BAM chimeric harmonized CPTAC3 7c565f6e-d73c-4811-af8b-743f0cf032c0 c046a045bcfd33df24fbe4a065dd34cd { 'aliquot_tag': 'ALQ_c1a659fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-01344.RNA-Seq.genomic.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 aea37943-77e5-4c33-8f33-6ee576ddcaf9.rna_seq.genomic.gdc_realn.bam 8824683659 BAM genomic harmonized CPTAC3 a6a87000-389a-4b2e-9fc5-5e7783444640 aab4e50e884f4017dfa57207061d83bd { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01344.RNA-Seq.genomic.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 c411b576-61a8-4e39-8fe5-a87018f3b769.rna_seq.genomic.gdc_realn.bam 9068020251 BAM genomic harmonized CPTAC3 1b008801-6ef1-458c-9355-f4c7b794635a 333b417bb754e17f11295fba497416fd { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor' } +C3N-01344.RNA-Seq.genomic.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0351170001 a353cf04-ed98-4d8d-9815-7c5b69004b0d.rna_seq.genomic.gdc_realn.bam 3446400743 BAM genomic harmonized CPTAC3 be86e2ff-af0c-4bb2-bb18-5a1b3f882b5f 1e0529bd2efd79292ccffd6048483aa2 { 'aliquot_tag': 'ALQ_c1a659fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-01344.RNA-Seq.R1_L005.A C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L005_R1_001.fastq.gz 3940056211 FASTQ R1_L005 unaligned CPTAC3 e3d24a9d-b91b-448f-b4d7-585e2078ac58 3a392c78be596c1865e15220f17462ee { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01344.RNA-Seq.R1_L007.T C3N-01344 UCEC RNA-Seq tumor CPT0116340010 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L007_R1_001.fastq.gz 4190146073 FASTQ R1_L007 unaligned CPTAC3 6c279227-c3ea-429b-8f27-999e61e49213 3294aa0c3a68d7b9803d5ad238c28b9c { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01344.RNA-Seq.R2_L005.A C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L005_R2_001.fastq.gz 4416845317 FASTQ R2_L005 unaligned CPTAC3 147ef354-4b8e-4ca4-9203-ca115de6f3ad ec3baf4082bad7ff844402dc22cff080 { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01344.RNA-Seq.R2_L007.T C3N-01344 UCEC RNA-Seq tumor CPT0116340010 181207_UNC32-K00270_0136_AH2N7LBBXY_CGTACG_S19_L007_R2_001.fastq.gz 4442762871 FASTQ R2_L007 unaligned CPTAC3 6b92fce0-bf2f-4f35-ac1a-b5e15559788d 7289996e7835ceaec23a880ff0c078da { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01344.RNA-Seq.T C3N-01344 UCEC RNA-Seq tumor CPT0351170001 20210729_P3_F12_WB7988-Plate3_S72_R1_001.fastq.gz 1846518862 FASTQ unaligned CPTAC3 d10e3e04-1e75-4601-aca5-1ca201432a1a 7250f8d3da7bd08e90af9d59860c5435 +C3N-01344.RNA-Seq.T C3N-01344 UCEC RNA-Seq tumor CPT0351170001 20210729_P3_F12_WB7988-Plate3_S72_R2_001.fastq.gz 2043043260 FASTQ unaligned CPTAC3 b094184c-2b14-43f0-8693-1ad718349f18 35d8c27e438008115db6df73f5a5686c +C3N-01344.RNA-Seq.transcriptome.A.hg38 C3N-01344 UCEC RNA-Seq tissue_normal CPT0116450009 aea37943-77e5-4c33-8f33-6ee576ddcaf9.rna_seq.transcriptome.gdc_realn.bam 11181324536 BAM transcriptome harmonized CPTAC3 ef37908e-1149-43d7-b316-3d271ec614dc 6a28d291784488a110484b9d4aa3f053 { 'aliquot_tag': 'ALQ_8a6b0be8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01344.RNA-Seq.transcriptome.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0116340010 c411b576-61a8-4e39-8fe5-a87018f3b769.rna_seq.transcriptome.gdc_realn.bam 11115478718 BAM transcriptome harmonized CPTAC3 44478569-f9a7-45fb-847f-15212a0a685d 0b7d823b29ff0cb161cfc8eef3b76aa2 { 'aliquot_tag': 'ALQ_cac99b05', 'gdc_sample_type': 'Primary Tumor' } +C3N-01344.RNA-Seq.transcriptome.T.hg38 C3N-01344 UCEC RNA-Seq tumor CPT0351170001 a353cf04-ed98-4d8d-9815-7c5b69004b0d.rna_seq.transcriptome.gdc_realn.bam 3184053141 BAM transcriptome harmonized CPTAC3 5d8f97c6-2308-4955-8485-1a598b3c3165 4ca4f12e51661103686a240f23736a3e { 'aliquot_tag': 'ALQ_c1a659fb', 'gdc_sample_type': 'Primary Tumor' } C3N-01344.WGS.A C3N-01344 UCEC WGS tissue_normal CPT0116450006 CPT0116450006.WholeGenome.RP-1303.bam 67056645980 BAM aligned CPTAC3 8c7e13fb-b439-4358-9ea6-282144770238 575d4477b06b37776b16236a8728573e { 'aliquot_tag': 'ALQ_1ad41679', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01344.WGS.A.hg38 C3N-01344 UCEC WGS tissue_normal CPT0116450006 e116178e-8092-4784-b1a3-f9b5fa31fd02_wgs_gdc_realn.bam 98478461965 BAM harmonized CPTAC3 d0ca7041-a1d7-4b29-adb9-1588fe8aa27b 0f66ae36c9f9ef802a096683ad41ec41 { 'aliquot_tag': 'ALQ_1ad41679', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01344.WGS.N C3N-01344 UCEC WGS blood_normal CPT0116540002 CPT0116540002.WholeGenome.RP-1303.bam 79449703152 BAM aligned CPTAC3 0f13cf0e-3fd3-457d-99a1-a5ea0dfe1829 20ac368c0cf6e95f06045b5833d29bc9 { 'aliquot_tag': 'ALQ_eb852875', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25204,11 +27128,11 @@ C3N-01346.miRNA-Seq.T.hg38 C3N-01346 UCEC miRNA-Seq tumor CPT0116550010 72d8c63b C3N-01346.RNA-Seq.chimeric.A.hg38 C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 368502b2-ec41-4efa-8c7a-f16b5ccc059a.rna_seq.chimeric.gdc_realn.bam 36921896 BAM chimeric harmonized CPTAC3 26dea4b4-2927-42c0-92e0-fa86fbe9675c 1a355b85297f2ca774d33b842208e634 { 'aliquot_tag': 'ALQ_3bf78b2d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01346.RNA-Seq.chimeric.T.hg38 C3N-01346 UCEC RNA-Seq tumor CPT0116550010 300be9c6-d051-40ae-b95f-f7a565ea108e.rna_seq.chimeric.gdc_realn.bam 144942070 BAM chimeric harmonized CPTAC3 d41198c0-0f11-44a0-8bcf-3cea2dc2bef5 78e3bc31a7d159eb01900f93efc5f229 { 'aliquot_tag': 'ALQ_21f051a8', 'gdc_sample_type': 'Primary Tumor' } C3N-01346.RNA-Seq.genomic.A.hg38 C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 368502b2-ec41-4efa-8c7a-f16b5ccc059a.rna_seq.genomic.gdc_realn.bam 9206674981 BAM genomic harmonized CPTAC3 dfad510b-6499-45ed-b153-48c5b7adb350 986d5ef9065704996b284296dfd89716 { 'aliquot_tag': 'ALQ_3bf78b2d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01346.RNA-Seq.genomic.T.hg38 C3N-01346 UCEC RNA-Seq tumor CPT0116550010 300be9c6-d051-40ae-b95f-f7a565ea108e.rna_seq.genomic.gdc_realn.bam 9672996414 BAM genomic harmonized CPTAC3 b82975e1-4e6a-4d59-83ea-fb88d4f61285 d96841e8d4877973a65556cf4634be0c { 'aliquot_tag': 'ALQ_21f051a8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01346.RNA-Seq.R1_L003.T C3N-01346 UCEC RNA-Seq tumor CPT0116550010 180502_UNC32-K00270_0094_BHTVLMBBXX_CAGATC_S11_L003_R1_001.fastq.gz 4055631261 FASTQ R1_L003 unaligned CPTAC3 e471cc71-0f0b-421b-a1fb-40136d957698 f4012ff6174a3cbad492d64357af63e1 { 'aliquot_tag': 'ALQ_21f051a8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01346.RNA-Seq.R1_L008.A C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L008_R1_001.fastq.gz 4017938022 FASTQ R1_L008 unaligned CPTAC3 7f559a17-edd2-4465-aee8-61684540c52e d6c53ff4d39721d31f65200c02147dc2 { 'aliquot_tag': 'ALQ_3bf78b2d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01346.RNA-Seq.R2_L003.T C3N-01346 UCEC RNA-Seq tumor CPT0116550010 180502_UNC32-K00270_0094_BHTVLMBBXX_CAGATC_S11_L003_R2_001.fastq.gz 4376754718 FASTQ R2_L003 unaligned CPTAC3 05f8cd15-4e8b-4bc0-abb9-86024f30587e 9332afa7fe0a9876b8bd24935f401456 { 'aliquot_tag': 'ALQ_21f051a8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01346.RNA-Seq.R2_L008.A C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L008_R2_001.fastq.gz 4469894731 FASTQ R2_L008 unaligned CPTAC3 a2d046e8-2efb-4587-8ac7-fb8e6e340b40 5dc381c6ca29b04ea32f11d3eb4bc297 { 'aliquot_tag': 'ALQ_3bf78b2d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01346.RNA-Seq.genomic.T.hg38 C3N-01346 UCEC RNA-Seq tumor CPT0116550010 300be9c6-d051-40ae-b95f-f7a565ea108e.rna_seq.genomic.gdc_realn.bam 9672996414 BAM genomic harmonized CPTAC3 66257f21-ca50-4336-9ebf-9f600f561b58 d96841e8d4877973a65556cf4634be0c { 'aliquot_tag': 'ALQ_21f051a8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01346.RNA-Seq.R1_L003.T C3N-01346 UCEC RNA-Seq tumor CPT0116550010 180502_UNC32-K00270_0094_BHTVLMBBXX_CAGATC_S11_L003_R1_001.fastq.gz 4055631261 FASTQ R1_L003 unaligned CPTAC3 e471cc71-0f0b-421b-a1fb-40136d957698 f4012ff6174a3cbad492d64357af63e1 { 'aliquot_tag': 'ALQ_21f051a8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01346.RNA-Seq.R1_L008.A C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L008_R1_001.fastq.gz 4017938022 FASTQ R1_L008 unaligned CPTAC3 7f559a17-edd2-4465-aee8-61684540c52e d6c53ff4d39721d31f65200c02147dc2 { 'aliquot_tag': 'ALQ_3bf78b2d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01346.RNA-Seq.R2_L003.T C3N-01346 UCEC RNA-Seq tumor CPT0116550010 180502_UNC32-K00270_0094_BHTVLMBBXX_CAGATC_S11_L003_R2_001.fastq.gz 4376754718 FASTQ R2_L003 unaligned CPTAC3 05f8cd15-4e8b-4bc0-abb9-86024f30587e 9332afa7fe0a9876b8bd24935f401456 { 'aliquot_tag': 'ALQ_21f051a8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01346.RNA-Seq.R2_L008.A C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 180516_UNC32-K00270_0095_AHTY5LBBXX_CGTACG_S5_L008_R2_001.fastq.gz 4469894731 FASTQ R2_L008 unaligned CPTAC3 a2d046e8-2efb-4587-8ac7-fb8e6e340b40 5dc381c6ca29b04ea32f11d3eb4bc297 { 'aliquot_tag': 'ALQ_3bf78b2d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-01346.RNA-Seq.transcriptome.A.hg38 C3N-01346 UCEC RNA-Seq tissue_normal CPT0116570009 368502b2-ec41-4efa-8c7a-f16b5ccc059a.rna_seq.transcriptome.gdc_realn.bam 11314507147 BAM transcriptome harmonized CPTAC3 3b647cc5-7d27-4d0c-bbff-92249606e922 379a069520ad0e428dd12e8057462782 { 'aliquot_tag': 'ALQ_3bf78b2d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01346.RNA-Seq.transcriptome.T.hg38 C3N-01346 UCEC RNA-Seq tumor CPT0116550010 300be9c6-d051-40ae-b95f-f7a565ea108e.rna_seq.transcriptome.gdc_realn.bam 9730008462 BAM transcriptome harmonized CPTAC3 493f70d1-06d1-49d6-88c1-2e9b03d8892a 4b5819cbe0a6b928444cd009252663a9 { 'aliquot_tag': 'ALQ_21f051a8', 'gdc_sample_type': 'Primary Tumor' } C3N-01346.WGS.A C3N-01346 UCEC WGS tissue_normal CPT0116570006 CPT0116570006.WholeGenome.RP-1303.bam 63203695291 BAM aligned CPTAC3 e231bc3c-8a0b-4f87-ac85-cf587137af57 4677c66d04373eb426ac36a112d97a18 { 'aliquot_tag': 'ALQ_ab4896bc', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25228,12 +27152,15 @@ C3N-01349.MethArray.Red.T C3N-01349 UCEC Methylation Array tumor CPT0116630006 2 C3N-01349.miRNA-Seq.T C3N-01349 UCEC miRNA-Seq tumor CPT0116630009 181119_UNC31-K00269_0165_AH27WCBBXY_ACTTGA_S32_L005_R1_001.unaln.bam 229017496 BAM unaligned CPTAC3 cfcff0fa-1511-4e8a-bc28-b560d4f29f46 cfb526f10baeacdbb49e2f4591a49d7c { 'aliquot_tag': 'ALQ_48e35f43', 'gdc_sample_type': 'Primary Tumor' } C3N-01349.miRNA-Seq.T.hg38 C3N-01349 UCEC miRNA-Seq tumor CPT0116630009 c1d61e42-d4bb-455f-b8c5-e166aa1cb038_mirnaseq_gdc_realn.bam 255389054 BAM harmonized CPTAC3 7375db27-d2f5-4672-9ca5-0a37e9585819 3febb90aff40ad91a7e74303e80456de { 'aliquot_tag': 'ALQ_48e35f43', 'gdc_sample_type': 'Primary Tumor' } C3N-01349.RNA-Seq.chimeric.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0116630009 3e9734fb-4977-4a0e-b44c-9d71e61f2a65.rna_seq.chimeric.gdc_realn.bam 70366872 BAM chimeric harmonized CPTAC3 5a9a5276-3d88-4a59-9a14-9a061469b66d bcfcefd5310001614b4d45b745fe93cc { 'aliquot_tag': 'ALQ_48e35f43', 'gdc_sample_type': 'Primary Tumor' } -C3N-01349.RNA-Seq.genomic.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0116630009 3e9734fb-4977-4a0e-b44c-9d71e61f2a65.rna_seq.genomic.gdc_realn.bam 9394931911 BAM genomic harmonized CPTAC3 3e54428a-36ca-45dc-af94-c454e8abc651 2fc5957908ff716a4e8873e995b18267 { 'aliquot_tag': 'ALQ_48e35f43', 'gdc_sample_type': 'Primary Tumor' } -C3N-01349.RNA-Seq.R1_L003.T C3N-01349 UCEC RNA-Seq tumor CPT0116630009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTTGA_S10_L003_R1_001.fastq.gz 4111081520 FASTQ R1_L003 unaligned CPTAC3 61da9b88-7482-4b7a-8e66-275ecf12ceaf 557c998197c73fb615c5bf788fb9299f { 'aliquot_tag': 'ALQ_48e35f43', 'gdc_sample_type': 'Primary Tumor' } -C3N-01349.RNA-Seq.R1_.T C3N-01349 UCEC RNA-Seq tumor CPT0351260001 20210723_P2_B2_WB7988-plate2_S14_R1_001.fastq.gz 6843220107 FASTQ R1_ unaligned CPTAC3 4d1944a9-6be7-416a-95e6-09ba204a1156 1a9f68dce2633edc8d02618e28b8b3b2 { 'aliquot_tag': 'ALQ_7a5202e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01349.RNA-Seq.R2_L003.T C3N-01349 UCEC RNA-Seq tumor CPT0116630009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTTGA_S10_L003_R2_001.fastq.gz 4449704981 FASTQ R2_L003 unaligned CPTAC3 c23d4640-ab47-475d-9805-92cabdd16f22 934c617301e51fabd4b69539a2c06d94 { 'aliquot_tag': 'ALQ_48e35f43', 'gdc_sample_type': 'Primary Tumor' } -C3N-01349.RNA-Seq.R2_.T C3N-01349 UCEC RNA-Seq tumor CPT0351260001 20210723_P2_B2_WB7988-plate2_S14_R2_001.fastq.gz 6973914603 FASTQ R2_ unaligned CPTAC3 1a3dab38-cbec-4f18-9fff-d2ba31895334 b692c91aa4a768a6f2762d42af54b165 { 'aliquot_tag': 'ALQ_7a5202e5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01349.RNA-Seq.chimeric.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0351260001 0925fcd8-e015-49f3-92a2-772029645728.rna_seq.chimeric.gdc_realn.bam 218001226 BAM chimeric harmonized CPTAC3 b4e9316b-7b0a-4ba8-940e-2d090ad104c9 5e0ffe3500ee2c05221209aa3568f375 { 'aliquot_tag': 'ALQ_7a5202e5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01349.RNA-Seq.genomic.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0116630009 3e9734fb-4977-4a0e-b44c-9d71e61f2a65.rna_seq.genomic.gdc_realn.bam 9394931911 BAM genomic harmonized CPTAC3 01bf4f9e-c502-45c4-bd96-e61bc7d08728 2fc5957908ff716a4e8873e995b18267 { 'aliquot_tag': 'ALQ_48e35f43', 'gdc_sample_type': 'Primary Tumor' } +C3N-01349.RNA-Seq.genomic.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0351260001 0925fcd8-e015-49f3-92a2-772029645728.rna_seq.genomic.gdc_realn.bam 11269607142 BAM genomic harmonized CPTAC3 8d415e88-fd14-4236-b7ea-e9ebff3485e1 e39966cc2c570b143cc8db10e357c8ec { 'aliquot_tag': 'ALQ_7a5202e5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01349.RNA-Seq.R1_L003.T C3N-01349 UCEC RNA-Seq tumor CPT0116630009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTTGA_S10_L003_R1_001.fastq.gz 4111081520 FASTQ R1_L003 unaligned CPTAC3 61da9b88-7482-4b7a-8e66-275ecf12ceaf 557c998197c73fb615c5bf788fb9299f { 'aliquot_tag': 'ALQ_48e35f43', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01349.RNA-Seq.R2_L003.T C3N-01349 UCEC RNA-Seq tumor CPT0116630009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTTGA_S10_L003_R2_001.fastq.gz 4449704981 FASTQ R2_L003 unaligned CPTAC3 c23d4640-ab47-475d-9805-92cabdd16f22 934c617301e51fabd4b69539a2c06d94 { 'aliquot_tag': 'ALQ_48e35f43', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01349.RNA-Seq.T C3N-01349 UCEC RNA-Seq tumor CPT0351260001 20210723_P2_B2_WB7988-plate2_S14_R1_001.fastq.gz 6843220107 FASTQ unaligned CPTAC3 4d1944a9-6be7-416a-95e6-09ba204a1156 1a9f68dce2633edc8d02618e28b8b3b2 +C3N-01349.RNA-Seq.T C3N-01349 UCEC RNA-Seq tumor CPT0351260001 20210723_P2_B2_WB7988-plate2_S14_R2_001.fastq.gz 6973914603 FASTQ unaligned CPTAC3 1a3dab38-cbec-4f18-9fff-d2ba31895334 b692c91aa4a768a6f2762d42af54b165 C3N-01349.RNA-Seq.transcriptome.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0116630009 3e9734fb-4977-4a0e-b44c-9d71e61f2a65.rna_seq.transcriptome.gdc_realn.bam 11307795323 BAM transcriptome harmonized CPTAC3 f0d7cd15-763c-4da1-ac6c-4c8c21e73949 16c24fd5706401a508f850a43f302e28 { 'aliquot_tag': 'ALQ_48e35f43', 'gdc_sample_type': 'Primary Tumor' } +C3N-01349.RNA-Seq.transcriptome.T.hg38 C3N-01349 UCEC RNA-Seq tumor CPT0351260001 0925fcd8-e015-49f3-92a2-772029645728.rna_seq.transcriptome.gdc_realn.bam 5188615671 BAM transcriptome harmonized CPTAC3 998a9a10-8ff5-4beb-bd5f-ae198b42efb6 2c89f7a9865b358099a9efe167b9b6b1 { 'aliquot_tag': 'ALQ_7a5202e5', 'gdc_sample_type': 'Primary Tumor' } C3N-01349.WGS.N C3N-01349 UCEC WGS blood_normal CPT0116700002 CPT0116700002.WholeGenome.RP-1303.bam 60320871709 BAM aligned CPTAC3 dff326aa-1f51-4b76-a66a-305f223c66ff be68943d798af4971a30a1d8eb30b7cd { 'aliquot_tag': 'ALQ_53cd2fbe', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01349.WGS.N.hg38 C3N-01349 UCEC WGS blood_normal CPT0116700002 567a10ad-cdde-4eb0-8466-fc347bebfc3d_wgs_gdc_realn.bam 87428347472 BAM harmonized CPTAC3 6207248b-6334-4d87-a3fe-328bd55629f8 c42c45505bb41d9b485e3d6cf383a855 { 'aliquot_tag': 'ALQ_53cd2fbe', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01349.WGS.T C3N-01349 UCEC WGS tumor CPT0116630006 CPT0116630006.WholeGenome.RP-1303.bam 67783617495 BAM aligned CPTAC3 76772d29-4e97-4528-82d4-55c26b02b3b6 675bec04504d4303bd140f34c94b9e76 { 'aliquot_tag': 'ALQ_d85c42d2', 'gdc_sample_type': 'Primary Tumor' } @@ -25252,12 +27179,12 @@ C3N-01361.miRNA-Seq.T C3N-01361 CCRCC miRNA-Seq tumor CPT0088760006 181012_UNC32 C3N-01361.miRNA-Seq.T.hg38 C3N-01361 CCRCC miRNA-Seq tumor CPT0088760006 24b5dbbf-c2b1-4474-9244-db3c3ff8fee5_mirnaseq_gdc_realn.bam 189207498 BAM harmonized CPTAC3 e4792232-f24c-4a4c-8ea3-818f6d973d7e 44aa8b36813eaf96b15995c278dd0a63 { 'aliquot_tag': 'ALQ_83eb6a32', 'gdc_sample_type': 'Primary Tumor' } C3N-01361.RNA-Seq.chimeric.A.hg38 C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 5d91fd01-3c04-484b-82b0-c4f1c2182dd0.rna_seq.chimeric.gdc_realn.bam 33049036 BAM chimeric harmonized CPTAC3 195b2137-2471-47ac-91e9-c3feb26c72fd 073f1ba3dd9a1888f9ef27ca5099cc26 { 'aliquot_tag': 'ALQ_3cdbd453', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01361.RNA-Seq.chimeric.T.hg38 C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 699fa273-d966-46ef-9dc4-a5ee67608395.rna_seq.chimeric.gdc_realn.bam 37150267 BAM chimeric harmonized CPTAC3 5090887a-596c-4db6-802a-5185598062fe b81cee855040a5fec1d52628b1f3514a { 'aliquot_tag': 'ALQ_83eb6a32', 'gdc_sample_type': 'Primary Tumor' } -C3N-01361.RNA-Seq.genomic.A.hg38 C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 5d91fd01-3c04-484b-82b0-c4f1c2182dd0.rna_seq.genomic.gdc_realn.bam 4559444430 BAM genomic harmonized CPTAC3 8bb6976d-e6d7-47c3-b150-d840876dc3de b4b3d4dee1d102db8f0d49000d02b157 { 'aliquot_tag': 'ALQ_3cdbd453', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01361.RNA-Seq.genomic.T.hg38 C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 699fa273-d966-46ef-9dc4-a5ee67608395.rna_seq.genomic.gdc_realn.bam 7757155451 BAM genomic harmonized CPTAC3 4e84a223-751a-4ccb-80f3-a3f04eb0a006 e100319035d9096e3ea887fee3c7b572 { 'aliquot_tag': 'ALQ_83eb6a32', 'gdc_sample_type': 'Primary Tumor' } -C3N-01361.RNA-Seq.R1_L004.T C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGTACG_S15_L004_R1_001.fastq.gz 3758817926 FASTQ R1_L004 unaligned CPTAC3 167936d6-1173-432c-b2ad-7a4d15125075 80cc9975c4157c7fdbd6a4ac12e76800 { 'aliquot_tag': 'ALQ_83eb6a32', 'gdc_sample_type': 'Primary Tumor' } -C3N-01361.RNA-Seq.R1_L007.A C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L007_R1_001.fastq.gz 2303551148 FASTQ R1_L007 unaligned CPTAC3 584971f6-a858-4b7a-b5e1-fae58b07a531 96d69435ef9e2bba145a8d8c9bed93dd { 'aliquot_tag': 'ALQ_3cdbd453', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01361.RNA-Seq.R2_L004.T C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGTACG_S15_L004_R2_001.fastq.gz 4094318640 FASTQ R2_L004 unaligned CPTAC3 aa2585d2-e488-466b-8b9b-e07d7068743a effd398ec87c20ab98afb19dbb7171f9 { 'aliquot_tag': 'ALQ_83eb6a32', 'gdc_sample_type': 'Primary Tumor' } -C3N-01361.RNA-Seq.R2_L007.A C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L007_R2_001.fastq.gz 2415104375 FASTQ R2_L007 unaligned CPTAC3 479821bb-bdfd-4dad-aade-fec8275e7753 8693e553bbdfa15cefb92d87a496d795 { 'aliquot_tag': 'ALQ_3cdbd453', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01361.RNA-Seq.genomic.A.hg38 C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 5d91fd01-3c04-484b-82b0-c4f1c2182dd0.rna_seq.genomic.gdc_realn.bam 4559444430 BAM genomic harmonized CPTAC3 56825602-f6c1-449d-a026-1e379762e07c b4b3d4dee1d102db8f0d49000d02b157 { 'aliquot_tag': 'ALQ_3cdbd453', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01361.RNA-Seq.genomic.T.hg38 C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 699fa273-d966-46ef-9dc4-a5ee67608395.rna_seq.genomic.gdc_realn.bam 7757155451 BAM genomic harmonized CPTAC3 c3f9da0a-ffb7-46d6-9b53-5b15b3b51fc9 e100319035d9096e3ea887fee3c7b572 { 'aliquot_tag': 'ALQ_83eb6a32', 'gdc_sample_type': 'Primary Tumor' } +C3N-01361.RNA-Seq.R1_L004.T C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGTACG_S15_L004_R1_001.fastq.gz 3758817926 FASTQ R1_L004 unaligned CPTAC3 167936d6-1173-432c-b2ad-7a4d15125075 80cc9975c4157c7fdbd6a4ac12e76800 { 'aliquot_tag': 'ALQ_83eb6a32', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01361.RNA-Seq.R1_L007.A C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L007_R1_001.fastq.gz 2303551148 FASTQ R1_L007 unaligned CPTAC3 584971f6-a858-4b7a-b5e1-fae58b07a531 96d69435ef9e2bba145a8d8c9bed93dd { 'aliquot_tag': 'ALQ_3cdbd453', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01361.RNA-Seq.R2_L004.T C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 170908_UNC31-K00269_0080_BHLJ52BBXX_CGTACG_S15_L004_R2_001.fastq.gz 4094318640 FASTQ R2_L004 unaligned CPTAC3 aa2585d2-e488-466b-8b9b-e07d7068743a effd398ec87c20ab98afb19dbb7171f9 { 'aliquot_tag': 'ALQ_83eb6a32', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01361.RNA-Seq.R2_L007.A C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 171215_UNC32-K00270_0072_AHN3THBBXX_ACTTGA_S3_L007_R2_001.fastq.gz 2415104375 FASTQ R2_L007 unaligned CPTAC3 479821bb-bdfd-4dad-aade-fec8275e7753 8693e553bbdfa15cefb92d87a496d795 { 'aliquot_tag': 'ALQ_3cdbd453', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-01361.RNA-Seq.transcriptome.A.hg38 C3N-01361 CCRCC RNA-Seq tissue_normal CPT0088780006 5d91fd01-3c04-484b-82b0-c4f1c2182dd0.rna_seq.transcriptome.gdc_realn.bam 5640123366 BAM transcriptome harmonized CPTAC3 cdf2d542-bf1f-4994-a4b2-b054cc735412 be219a45fecaec194831b380a94c9c67 { 'aliquot_tag': 'ALQ_3cdbd453', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01361.RNA-Seq.transcriptome.T.hg38 C3N-01361 CCRCC RNA-Seq tumor CPT0088760006 699fa273-d966-46ef-9dc4-a5ee67608395.rna_seq.transcriptome.gdc_realn.bam 9984298492 BAM transcriptome harmonized CPTAC3 3c02c18b-6d40-4af8-9354-bceefb37e568 e48fdc3232784b398c2d1155b50c778f { 'aliquot_tag': 'ALQ_83eb6a32', 'gdc_sample_type': 'Primary Tumor' } C3N-01361.WGS.A C3N-01361 CCRCC WGS tissue_normal CPT0088780009 CPT0088780009.WholeGenome.RP-1303.bam 52356742485 BAM aligned CPTAC3 4727fff2-982d-41e2-a3fb-59b127bd4807 b40bea06be206b07cc925a69e2e9db76 { 'aliquot_tag': 'ALQ_ac64c9c2', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25276,11 +27203,11 @@ C3N-01362.MethArray.Green.T C3N-01362 CCRCC Methylation Array tumor CPT038007000 C3N-01362.MethArray.Red.T C3N-01362 CCRCC Methylation Array tumor CPT0380070009 205555380179_R02C01_Red.idat 13677960 IDAT Red NA CPTAC3 761f17b0-fb6a-4941-9cc1-0e0a072168a4 431126ec81abe42c7aea76d52bbd6806 { 'aliquot_tag': 'ALQ_39531c09', 'gdc_sample_type': 'Primary Tumor' } C3N-01362.miRNA-Seq.T C3N-01362 CCRCC miRNA-Seq tumor CPT0380070006 210111_UNC32-K00270_0270_AHJ5LKBBXY_ACAGTG_S39_L003_R1_001.unaln.bam 251126758 BAM unaligned CPTAC3 6efbe72b-c2ad-4de2-bc83-c1496bb2917b a7eb5072e8e9c68a6fe91780f2bdcde6 { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor' } C3N-01362.miRNA-Seq.T.hg38 C3N-01362 CCRCC miRNA-Seq tumor CPT0380070006 f42e626c-a202-44d5-95fd-1f8a49d87ba0_mirnaseq_gdc_realn.bam 263952434 BAM harmonized CPTAC3 3ddf9e9e-8753-42ae-ae7e-8bf97ceeb0ad e327e31e830b18a51c286fdb7a243d1a { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor' } -C3N-01362.RNA-Seq.chimeric.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 3c984e07-e2fe-4c77-a49e-c143301bba61.rna_seq.chimeric.gdc_realn.bam 132209259 BAM chimeric harmonized CPTAC3 10cd72c1-48dd-4903-b86a-71fb187ea40b 5bda38781755c6335012e2b7d54b5b36 { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor' } -C3N-01362.RNA-Seq.genomic.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 3c984e07-e2fe-4c77-a49e-c143301bba61.rna_seq.genomic.gdc_realn.bam 12833495715 BAM genomic harmonized CPTAC3 ee84ef26-0504-4d5b-94fd-7c2c6b692651 35b70d7c8d013fde8ed8eb1f04a5144a { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor' } -C3N-01362.RNA-Seq.R1_L001.T C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 210318_UNC32-K00270_0277_AHKNTVBBXY_ATCCACTG-AGGTGCGT_S1_L001_R1_001.fastq.gz 6411723357 FASTQ R1_L001 unaligned CPTAC3 491c360a-853a-45a7-89ef-bf2d4e0c2b95 ffaaa340dcc49de894dcf2b01ebe9dd2 { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor' } -C3N-01362.RNA-Seq.R2_L001.T C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 210318_UNC32-K00270_0277_AHKNTVBBXY_ATCCACTG-AGGTGCGT_S1_L001_R2_001.fastq.gz 7328988483 FASTQ R2_L001 unaligned CPTAC3 199a7fe0-1412-496f-a1b0-83e313664353 2a8ee627b1825d63aa85fae1b458181a { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor' } -C3N-01362.RNA-Seq.transcriptome.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 3c984e07-e2fe-4c77-a49e-c143301bba61.rna_seq.transcriptome.gdc_realn.bam 16189595267 BAM transcriptome harmonized CPTAC3 7289cf52-016f-4b37-ac75-56904b420d82 1855c63579901e9650153e950d639c1b { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor' } +C3N-01362.RNA-Seq.chimeric.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 b97c8dbd-a80b-4ae1-be11-34309dadc320.rna_seq.chimeric.gdc_realn.bam 132218468 BAM chimeric harmonized CPTAC3 2166b7f6-7389-4cec-846f-09dac02950b5 52db04d33f060ce6c8ede231f9d0719b { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor' } +C3N-01362.RNA-Seq.genomic.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 b97c8dbd-a80b-4ae1-be11-34309dadc320.rna_seq.genomic.gdc_realn.bam 12846858141 BAM genomic harmonized CPTAC3 e843cd80-8719-4d3e-8b06-133d05e78151 4e57d327ecf4efbc03adc53f2edb3ae0 { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor' } +C3N-01362.RNA-Seq.R1_L001.T C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 210318_UNC32-K00270_0277_AHKNTVBBXY_ATCCACTG-AGGTGCGT_S1_L001_R1_001.fastq.gz 6411723357 FASTQ R1_L001 unaligned CPTAC3 491c360a-853a-45a7-89ef-bf2d4e0c2b95 ffaaa340dcc49de894dcf2b01ebe9dd2 { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01362.RNA-Seq.R2_L001.T C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 210318_UNC32-K00270_0277_AHKNTVBBXY_ATCCACTG-AGGTGCGT_S1_L001_R2_001.fastq.gz 7328988483 FASTQ R2_L001 unaligned CPTAC3 199a7fe0-1412-496f-a1b0-83e313664353 2a8ee627b1825d63aa85fae1b458181a { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01362.RNA-Seq.transcriptome.T.hg38 C3N-01362 CCRCC RNA-Seq tumor CPT0380070006 b97c8dbd-a80b-4ae1-be11-34309dadc320.rna_seq.transcriptome.gdc_realn.bam 18461796051 BAM transcriptome harmonized CPTAC3 d0b4233e-e098-41a3-9395-e642425fde13 edb2ef304b24b3dc72d70e3cf070850d { 'aliquot_tag': 'ALQ_a9ec0198', 'gdc_sample_type': 'Primary Tumor' } C3N-01362.WGS.N C3N-01362 CCRCC WGS blood_normal CPT0380340002 CPT0380340002.WholeGenome.RP-2158.bam 26199352816 BAM aligned CPTAC3 572242fe-3a57-462e-9585-340b62a83d95 0ed94963251ef90463e432105a6b6dd6 { 'aliquot_tag': 'ALQ_6fb5cdff', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01362.WGS.N.hg38 C3N-01362 CCRCC WGS blood_normal CPT0380340002 ecf883e0-2dfe-4ae3-b792-55a66cfb6008_wgs_gdc_realn.bam 77722214181 BAM harmonized CPTAC3 8118ada0-0d7e-4ef2-a989-72ddfb396325 faf5fa262e41686997a2da827e113890 { 'aliquot_tag': 'ALQ_6fb5cdff', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01362.WGS.T C3N-01362 CCRCC WGS tumor CPT0380070009 CPT0380070009.WholeGenome.RP-2158.bam 37719933914 BAM aligned CPTAC3 97bd519a-4247-4938-8ed1-067de905540d cbfd917ad6cf6b87c56adb712f815ff1 { 'aliquot_tag': 'ALQ_39531c09', 'gdc_sample_type': 'Primary Tumor' } @@ -25294,9 +27221,9 @@ C3N-01364.MethArray.Red.T C3N-01364 GBM Methylation Array tumor CPT0093450009 20 C3N-01364.miRNA-Seq.T C3N-01364 GBM miRNA-Seq tumor CPT0093450006 180828_UNC32-K00270_0112_AHWTLNBBXX_TACAGC_S48_L007_R1_001.unaln.bam 222117710 BAM unaligned CPTAC3 737ef6ea-a8bb-4ef5-a639-ef4409ed0875 a490d68743ed5d53faa39914f2f47b2b { 'aliquot_tag': 'ALQ_8c723628', 'gdc_sample_type': 'Primary Tumor' } C3N-01364.miRNA-Seq.T.hg38 C3N-01364 GBM miRNA-Seq tumor CPT0093450006 aee27d9e-7f0b-4d50-b564-a110b782a5f3_mirnaseq_gdc_realn.bam 248199812 BAM harmonized CPTAC3 89629ea7-fa74-4f3f-9261-1c4f3001839a 63aa2be4763a3b675b4bc1ca69d137a8 { 'aliquot_tag': 'ALQ_8c723628', 'gdc_sample_type': 'Primary Tumor' } C3N-01364.RNA-Seq.chimeric.T.hg38 C3N-01364 GBM RNA-Seq tumor CPT0093450006 4a32c0be-51b4-4da4-b90c-542616af6e6b.rna_seq.chimeric.gdc_realn.bam 31298151 BAM chimeric harmonized CPTAC3 374d7f0e-3ce3-4ce2-81d3-8fb94c6f766b a5597233963199f2857ee3c23cbee897 { 'aliquot_tag': 'ALQ_8c723628', 'gdc_sample_type': 'Primary Tumor' } -C3N-01364.RNA-Seq.genomic.T.hg38 C3N-01364 GBM RNA-Seq tumor CPT0093450006 4a32c0be-51b4-4da4-b90c-542616af6e6b.rna_seq.genomic.gdc_realn.bam 8512625345 BAM genomic harmonized CPTAC3 7d7e2677-623d-4e35-b2e8-d9a5d3f8f1e2 55272da32c40ae312ec6b1dbff80207c { 'aliquot_tag': 'ALQ_8c723628', 'gdc_sample_type': 'Primary Tumor' } -C3N-01364.RNA-Seq.R1_L008.T C3N-01364 GBM RNA-Seq tumor CPT0093450006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R1_001.fastq.gz 4080118644 FASTQ R1_L008 unaligned CPTAC3 d1a8bc5a-1fee-467d-bd74-2f300eaca110 bacc7e5feb6be40d91fb0d26778b336f { 'aliquot_tag': 'ALQ_8c723628', 'gdc_sample_type': 'Primary Tumor' } -C3N-01364.RNA-Seq.R2_L008.T C3N-01364 GBM RNA-Seq tumor CPT0093450006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R2_001.fastq.gz 4324767117 FASTQ R2_L008 unaligned CPTAC3 8d374973-7198-49c6-a491-e98ca9a8232c c0fb59b6deacc0cbf4418fa909249d5c { 'aliquot_tag': 'ALQ_8c723628', 'gdc_sample_type': 'Primary Tumor' } +C3N-01364.RNA-Seq.genomic.T.hg38 C3N-01364 GBM RNA-Seq tumor CPT0093450006 4a32c0be-51b4-4da4-b90c-542616af6e6b.rna_seq.genomic.gdc_realn.bam 8512625345 BAM genomic harmonized CPTAC3 28be5f58-b672-4126-92ab-80d1caeb4028 55272da32c40ae312ec6b1dbff80207c { 'aliquot_tag': 'ALQ_8c723628', 'gdc_sample_type': 'Primary Tumor' } +C3N-01364.RNA-Seq.R1_L008.T C3N-01364 GBM RNA-Seq tumor CPT0093450006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R1_001.fastq.gz 4080118644 FASTQ R1_L008 unaligned CPTAC3 d1a8bc5a-1fee-467d-bd74-2f300eaca110 bacc7e5feb6be40d91fb0d26778b336f { 'aliquot_tag': 'ALQ_8c723628', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01364.RNA-Seq.R2_L008.T C3N-01364 GBM RNA-Seq tumor CPT0093450006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L008_R2_001.fastq.gz 4324767117 FASTQ R2_L008 unaligned CPTAC3 8d374973-7198-49c6-a491-e98ca9a8232c c0fb59b6deacc0cbf4418fa909249d5c { 'aliquot_tag': 'ALQ_8c723628', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01364.RNA-Seq.transcriptome.T.hg38 C3N-01364 GBM RNA-Seq tumor CPT0093450006 4a32c0be-51b4-4da4-b90c-542616af6e6b.rna_seq.transcriptome.gdc_realn.bam 10444373272 BAM transcriptome harmonized CPTAC3 cd046c2f-6e86-486c-8a61-3b7c789f9e43 b9e59018154fa1ec07d38fde08ff4439 { 'aliquot_tag': 'ALQ_8c723628', 'gdc_sample_type': 'Primary Tumor' } C3N-01364.WGS.N C3N-01364 GBM WGS blood_normal CPT0093490002 CPT0093490002.WholeGenome.RP-1303.bam 61440378579 BAM aligned CPTAC3 cd2bde11-33a6-4e77-b8d5-a0962ecc287a 8af3ae25739af705bbd18bbef1873555 { 'aliquot_tag': 'ALQ_4eef1f30', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01364.WGS.N.hg38 C3N-01364 GBM WGS blood_normal CPT0093490002 49ca41e9-c06a-4b28-8420-6ac7dcc8dcbc_wgs_gdc_realn.bam 90233355921 BAM harmonized CPTAC3 2e78972e-d40d-49c7-9dea-80a2ae300520 361b5f55940956db458fc13608c8e7f9 { 'aliquot_tag': 'ALQ_4eef1f30', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25307,18 +27234,24 @@ C3N-01364.WXS.N.hg38 C3N-01364 GBM WXS blood_normal CPT0093490002 49ca41e9-c06a- C3N-01364.WXS.T C3N-01364 GBM WXS tumor CPT0093450009 CPT0093450009.WholeExome.RP-1303.bam 36944728175 BAM aligned CPTAC3 137a00f2-9c00-4a8c-ac49-ee36b85905ac 50a0bec0e6381644523cda4914df26ae { 'aliquot_tag': 'ALQ_1ccd2bb9', 'gdc_sample_type': 'Primary Tumor' } C3N-01364.WXS.T.hg38 C3N-01364 GBM WXS tumor CPT0093450009 5f6180da-9f43-41a4-ac5b-816dd3297285_wxs_gdc_realn.bam 50361215715 BAM harmonized CPTAC3 a8b76d35-f66a-4040-bfed-be2ece7e3cbf 39b8156354753d5a5e722bc37f59f2bc { 'aliquot_tag': 'ALQ_1ccd2bb9', 'gdc_sample_type': 'Primary Tumor' } C3N-01365.miRNA-Seq.A C3N-01365 GBM miRNA-Seq tissue_normal CPT0402900011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCGGCA_S40_L005_R1_001.unaln.bam 246506867 BAM unaligned CPTAC3 641fbd62-5be4-4790-be99-c487e65764c9 ae842e8ac0744f2918cc209417cc970e { 'aliquot_tag': 'ALQ_9ba74ff7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01365.RNA-Seq.R1_L003.A C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R1_001.fastq.gz 4767088058 FASTQ R1_L003 unaligned CPTAC3 9936d4a4-b553-40fc-9739-16e57a11ecee 37130b0f844ded68d4f593d19a753a9a { 'aliquot_tag': 'ALQ_9ba74ff7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01365.RNA-Seq.R2_L003.A C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R2_001.fastq.gz 4948579616 FASTQ R2_L003 unaligned CPTAC3 10b7380d-90bc-47db-8580-ec64ccc6dea6 57767075694365df86e471fd213c90ea { 'aliquot_tag': 'ALQ_9ba74ff7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01365.miRNA-Seq.A.hg38 C3N-01365 GBM miRNA-Seq tissue_normal CPT0402900011 b79e1251-ab72-47c9-91be-536e48c6e2ca_mirnaseq_gdc_realn.bam 265442536 BAM harmonized CPTAC3 f0ef482a-6b6f-4527-a97a-1268cd13d733 2ee52206e6b194443fc499b583ca2165 { 'aliquot_tag': 'ALQ_9ba74ff7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01365.RNA-Seq.chimeric.A.hg38 C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 977ca833-c6cc-4e78-b081-d4e52bedaf60.rna_seq.chimeric.gdc_realn.bam 465933722 BAM chimeric harmonized CPTAC3 b0333faf-0347-4a18-8543-1218e0bb0ee2 42ceea8c22ade86db1b56ff9e4087ebc { 'aliquot_tag': 'ALQ_9ba74ff7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01365.RNA-Seq.genomic.A.hg38 C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 977ca833-c6cc-4e78-b081-d4e52bedaf60.rna_seq.genomic.gdc_realn.bam 10267863597 BAM genomic harmonized CPTAC3 406ad337-9579-4e48-aa51-17aa1802ab23 0a69c6d928c47f54d9221cd5ac3bd552 { 'aliquot_tag': 'ALQ_9ba74ff7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01365.RNA-Seq.R1_L003.A C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R1_001.fastq.gz 4767088058 FASTQ R1_L003 unaligned CPTAC3 9936d4a4-b553-40fc-9739-16e57a11ecee 37130b0f844ded68d4f593d19a753a9a { 'aliquot_tag': 'ALQ_9ba74ff7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01365.RNA-Seq.R2_L003.A C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 210708_UNC32-K00270_0290_BHLLHHBBXY_GAACCGCG-TGACCTTA_S11_L003_R2_001.fastq.gz 4948579616 FASTQ R2_L003 unaligned CPTAC3 10b7380d-90bc-47db-8580-ec64ccc6dea6 57767075694365df86e471fd213c90ea { 'aliquot_tag': 'ALQ_9ba74ff7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-01365.RNA-Seq.transcriptome.A.hg38 C3N-01365 GBM RNA-Seq tissue_normal CPT0402900011 977ca833-c6cc-4e78-b081-d4e52bedaf60.rna_seq.transcriptome.gdc_realn.bam 11140339091 BAM transcriptome harmonized CPTAC3 e89e1fb8-0d3d-44b9-86d1-4547baf79bce 6539318eb2741341db83e39b7ee48bc3 { 'aliquot_tag': 'ALQ_9ba74ff7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01365.WXS.A C3N-01365 GBM WXS tissue_normal CPT0402900007 CPT0402900007.WholeExome.RP-1303.bam 30135454971 BAM aligned CPTAC3 ca63dc64-16bb-43bd-ad1b-55236ecc7241 925f49ae57dbc835d6842aa63cf0a5cd { 'aliquot_tag': 'ALQ_6bdfdb83', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01365.WXS.A.hg38 C3N-01365 GBM WXS tissue_normal CPT0402900007 707224bf-dd01-488d-9e23-2abc8477f15c_wxs_gdc_realn.bam 41380776856 BAM harmonized CPTAC3 a1dacd7d-6b75-4fe9-a2b2-3b5496d2aa71 98315bbd041cf3e3489c84afca803d7a { 'aliquot_tag': 'ALQ_6bdfdb83', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01365.WXS.N C3N-01365 GBM WXS blood_normal CPT0403010002 CPT0403010002.WholeExome.RP-1303.bam 26391979122 BAM aligned CPTAC3 4aefb216-cefd-4be3-8652-8da7bba9223d 694940411cff19a50f1bc3bb695e88ff { 'aliquot_tag': 'ALQ_a7ad5cc0', 'gdc_sample_type': 'Blood Derived Normal' } +C3N-01365.WXS.N.hg38 C3N-01365 GBM WXS blood_normal CPT0403010002 5e32c5e9-6286-46a1-8780-4ed65d13fde0_wxs_gdc_realn.bam 36291423036 BAM harmonized CPTAC3 02d51bfb-91b3-414c-9ac7-7bb7adc737ab c2485e185105079eec110b578ae21994 { 'aliquot_tag': 'ALQ_a7ad5cc0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01366.MethArray.Green.T C3N-01366 GBM Methylation Array tumor CPT0093510009 202234380017_R07C01_Grn.idat 13676231 IDAT Green NA CPTAC3 7c541244-5c87-44ab-b69f-ad1d3e1fc770 90390608fdbc6af51694b5a792a05dc4 { 'aliquot_tag': 'ALQ_22115edc', 'gdc_sample_type': 'Primary Tumor' } C3N-01366.MethArray.Red.T C3N-01366 GBM Methylation Array tumor CPT0093510009 202234380017_R07C01_Red.idat 13676231 IDAT Red NA CPTAC3 4346ab8b-8652-4667-a4fb-2598604cf4f2 e3ddb6e752afa652ac2b4bad07fd325f { 'aliquot_tag': 'ALQ_22115edc', 'gdc_sample_type': 'Primary Tumor' } C3N-01366.miRNA-Seq.T C3N-01366 GBM miRNA-Seq tumor CPT0093510006 180828_UNC32-K00270_0112_AHWTLNBBXX_TATAAT_S32_L007_R1_001.unaln.bam 274027244 BAM unaligned CPTAC3 cf17b84e-1ce1-4e9c-9cc5-8ec1d6093971 47c806f5ed8d4909949e51e2d76d23db { 'aliquot_tag': 'ALQ_b2ae434d', 'gdc_sample_type': 'Primary Tumor' } C3N-01366.miRNA-Seq.T.hg38 C3N-01366 GBM miRNA-Seq tumor CPT0093510006 d3050d4d-543c-40af-8e6e-569c0951f14a_mirnaseq_gdc_realn.bam 307539345 BAM harmonized CPTAC3 5f2fbbfe-cb87-4eda-9cd1-43d9e7aadd7f 912c0fce93fb09c02a95f68327e2b30b { 'aliquot_tag': 'ALQ_b2ae434d', 'gdc_sample_type': 'Primary Tumor' } C3N-01366.RNA-Seq.chimeric.T.hg38 C3N-01366 GBM RNA-Seq tumor CPT0093510006 005b79ce-22fd-4575-9271-a41bfebc94d3.rna_seq.chimeric.gdc_realn.bam 26747850 BAM chimeric harmonized CPTAC3 02157e1b-8962-402a-a786-514b2fca5cc4 21dc348fd9b671fe92ed3db5a4ec793f { 'aliquot_tag': 'ALQ_b2ae434d', 'gdc_sample_type': 'Primary Tumor' } C3N-01366.RNA-Seq.genomic.T.hg38 C3N-01366 GBM RNA-Seq tumor CPT0093510006 005b79ce-22fd-4575-9271-a41bfebc94d3.rna_seq.genomic.gdc_realn.bam 8414599321 BAM genomic harmonized CPTAC3 196012c7-1e92-43c6-b838-674e977a5ed8 b94ff99904cecc6b606837cbad1d6b09 { 'aliquot_tag': 'ALQ_b2ae434d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01366.RNA-Seq.R1_L008.T C3N-01366 GBM RNA-Seq tumor CPT0093510006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L008_R1_001.fastq.gz 3842996129 FASTQ R1_L008 unaligned CPTAC3 2473c3e8-c5b3-4cd7-badc-e7451a85bcd0 0b3f0bdacd824681afbdbbeb0c732fc8 { 'aliquot_tag': 'ALQ_b2ae434d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01366.RNA-Seq.R2_L008.T C3N-01366 GBM RNA-Seq tumor CPT0093510006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L008_R2_001.fastq.gz 4130353029 FASTQ R2_L008 unaligned CPTAC3 117c36a0-7e93-4b90-b819-0d8db6787d03 e29ed65fb41ee8b85f1a01c0188b7872 { 'aliquot_tag': 'ALQ_b2ae434d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01366.RNA-Seq.R1_L008.T C3N-01366 GBM RNA-Seq tumor CPT0093510006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L008_R1_001.fastq.gz 3842996129 FASTQ R1_L008 unaligned CPTAC3 2473c3e8-c5b3-4cd7-badc-e7451a85bcd0 0b3f0bdacd824681afbdbbeb0c732fc8 { 'aliquot_tag': 'ALQ_b2ae434d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01366.RNA-Seq.R2_L008.T C3N-01366 GBM RNA-Seq tumor CPT0093510006 171205_UNC32-K00270_0069_BHN2HGBBXX_GTTTCG_S1_L008_R2_001.fastq.gz 4130353029 FASTQ R2_L008 unaligned CPTAC3 117c36a0-7e93-4b90-b819-0d8db6787d03 e29ed65fb41ee8b85f1a01c0188b7872 { 'aliquot_tag': 'ALQ_b2ae434d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01366.RNA-Seq.transcriptome.T.hg38 C3N-01366 GBM RNA-Seq tumor CPT0093510006 005b79ce-22fd-4575-9271-a41bfebc94d3.rna_seq.transcriptome.gdc_realn.bam 11203814238 BAM transcriptome harmonized CPTAC3 68da9046-783a-4be4-9546-b1c20ce43637 68d0c532b73e20ccbf99d0a8a2f56048 { 'aliquot_tag': 'ALQ_b2ae434d', 'gdc_sample_type': 'Primary Tumor' } C3N-01366.WGS.N C3N-01366 GBM WGS blood_normal CPT0093540002 CPT0093540002.WholeGenome.RP-1303.bam 68247624433 BAM aligned CPTAC3 4fa37f8f-a8ab-49fd-bbf9-baf2fed74d57 8451069dbe86fe4f435baae561c82049 { 'aliquot_tag': 'ALQ_7d230824', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01366.WGS.N.hg38 C3N-01366 GBM WGS blood_normal CPT0093540002 dc744f87-3e3b-4eb1-b7de-ab743ef63880_wgs_gdc_realn.bam 101811273944 BAM harmonized CPTAC3 64768550-ac2f-4b5c-84ea-37014a8c1af4 b07381fca7f2ab78c47ecf6c24b4a035 { 'aliquot_tag': 'ALQ_7d230824', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25333,9 +27266,9 @@ C3N-01367.MethArray.Red.T C3N-01367 GBM Methylation Array tumor CPT0093550012 20 C3N-01367.miRNA-Seq.T C3N-01367 GBM miRNA-Seq tumor CPT0093550006 180828_UNC32-K00270_0112_AHWTLNBBXX_TCATTC_S31_L007_R1_001.unaln.bam 191928365 BAM unaligned CPTAC3 25274363-c7ef-47e5-9f28-4d9e6273018c 08b7c239f4d075d50c200a4ac7b15bc7 { 'aliquot_tag': 'ALQ_472ee58d', 'gdc_sample_type': 'Primary Tumor' } C3N-01367.miRNA-Seq.T.hg38 C3N-01367 GBM miRNA-Seq tumor CPT0093550006 5eb0a705-1018-48a5-8f5e-6ff6c652b0a8_mirnaseq_gdc_realn.bam 219936662 BAM harmonized CPTAC3 7877587b-72b9-4442-bc28-785a58393dc6 3e3414878dd2c3d87e39360ceed5d6b0 { 'aliquot_tag': 'ALQ_472ee58d', 'gdc_sample_type': 'Primary Tumor' } C3N-01367.RNA-Seq.chimeric.T.hg38 C3N-01367 GBM RNA-Seq tumor CPT0093550006 25057577-dd00-4af4-a6e2-e73484ad5693.rna_seq.chimeric.gdc_realn.bam 30832128 BAM chimeric harmonized CPTAC3 218d4b57-9cde-4523-bc3e-071864f1dcc6 6beaf95c607168def36becaaf636659d { 'aliquot_tag': 'ALQ_472ee58d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01367.RNA-Seq.genomic.T.hg38 C3N-01367 GBM RNA-Seq tumor CPT0093550006 25057577-dd00-4af4-a6e2-e73484ad5693.rna_seq.genomic.gdc_realn.bam 8710045745 BAM genomic harmonized CPTAC3 81817cf6-d29c-4582-9f27-539e9de41ef7 82239b0f8f6542559164f4a9a8dc13f4 { 'aliquot_tag': 'ALQ_472ee58d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01367.RNA-Seq.R1_L007.T C3N-01367 GBM RNA-Seq tumor CPT0093550006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L007_R1_001.fastq.gz 3870494330 FASTQ R1_L007 unaligned CPTAC3 922258c7-88bc-4d03-8018-5070f9061da4 a26c3bc9481624b6817d89cf69fc18f7 { 'aliquot_tag': 'ALQ_472ee58d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01367.RNA-Seq.R2_L007.T C3N-01367 GBM RNA-Seq tumor CPT0093550006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L007_R2_001.fastq.gz 4185337784 FASTQ R2_L007 unaligned CPTAC3 884c747b-7ece-4152-89ed-018009adab0f 324ac325ecb1d3fe36a89afbe457b59f { 'aliquot_tag': 'ALQ_472ee58d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01367.RNA-Seq.genomic.T.hg38 C3N-01367 GBM RNA-Seq tumor CPT0093550006 25057577-dd00-4af4-a6e2-e73484ad5693.rna_seq.genomic.gdc_realn.bam 8710045745 BAM genomic harmonized CPTAC3 f66cd985-2682-48ba-9eb4-b9204b05b71d 82239b0f8f6542559164f4a9a8dc13f4 { 'aliquot_tag': 'ALQ_472ee58d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01367.RNA-Seq.R1_L007.T C3N-01367 GBM RNA-Seq tumor CPT0093550006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L007_R1_001.fastq.gz 3870494330 FASTQ R1_L007 unaligned CPTAC3 922258c7-88bc-4d03-8018-5070f9061da4 a26c3bc9481624b6817d89cf69fc18f7 { 'aliquot_tag': 'ALQ_472ee58d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01367.RNA-Seq.R2_L007.T C3N-01367 GBM RNA-Seq tumor CPT0093550006 171205_UNC32-K00270_0069_BHN2HGBBXX_CGTACG_S4_L007_R2_001.fastq.gz 4185337784 FASTQ R2_L007 unaligned CPTAC3 884c747b-7ece-4152-89ed-018009adab0f 324ac325ecb1d3fe36a89afbe457b59f { 'aliquot_tag': 'ALQ_472ee58d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01367.RNA-Seq.transcriptome.T.hg38 C3N-01367 GBM RNA-Seq tumor CPT0093550006 25057577-dd00-4af4-a6e2-e73484ad5693.rna_seq.transcriptome.gdc_realn.bam 9249519225 BAM transcriptome harmonized CPTAC3 c2770a94-e199-4ea6-ac3e-a1acd13a613c 7350fa4745369d49467940d0844c37cd { 'aliquot_tag': 'ALQ_472ee58d', 'gdc_sample_type': 'Primary Tumor' } C3N-01367.WGS.N C3N-01367 GBM WGS blood_normal CPT0093570002 CPT0093570002.WholeGenome.RP-1303.bam 77949245810 BAM aligned CPTAC3 1c41ed2c-df2c-4cb8-b485-91f91839a69e 256ebb8a5ad6ec42249e6f3496b9da73 { 'aliquot_tag': 'ALQ_3a8372f4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01367.WGS.N.hg38 C3N-01367 GBM WGS blood_normal CPT0093570002 48c74137-31a5-45dc-a63f-026614b79af0_wgs_gdc_realn.bam 116424006952 BAM harmonized CPTAC3 cd8825ce-40b7-4842-b8f5-227d168734d8 72a8fc07d6c9c0d3fe43e7fdb8c1c3ee { 'aliquot_tag': 'ALQ_3a8372f4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25350,9 +27283,9 @@ C3N-01368.MethArray.Red.T C3N-01368 GBM Methylation Array tumor CPT0093590009 20 C3N-01368.miRNA-Seq.T C3N-01368 GBM miRNA-Seq tumor CPT0093590006 180828_UNC32-K00270_0112_AHWTLNBBXX_TCCCGA_S30_L007_R1_001.unaln.bam 230268306 BAM unaligned CPTAC3 c0246dbb-bd76-4554-9aeb-40abf9f44dd6 d5c015d331cb063a6a22238affa86175 { 'aliquot_tag': 'ALQ_82de088c', 'gdc_sample_type': 'Primary Tumor' } C3N-01368.miRNA-Seq.T.hg38 C3N-01368 GBM miRNA-Seq tumor CPT0093590006 2a9f4bf8-04c1-4045-9d04-1ba3e5a4261a_mirnaseq_gdc_realn.bam 262154236 BAM harmonized CPTAC3 304db52c-ed3d-4ebf-baef-7139e3b3e536 747096d54c0b398c5902de9541e48cda { 'aliquot_tag': 'ALQ_82de088c', 'gdc_sample_type': 'Primary Tumor' } C3N-01368.RNA-Seq.chimeric.T.hg38 C3N-01368 GBM RNA-Seq tumor CPT0093590006 42bbb410-9ac4-4801-bfaa-b10ad00a0a45.rna_seq.chimeric.gdc_realn.bam 41718597 BAM chimeric harmonized CPTAC3 6a985870-cc55-4b01-bb07-1a750c17480f 21e4665fdcd00545971bdc706f2bf12b { 'aliquot_tag': 'ALQ_82de088c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01368.RNA-Seq.genomic.T.hg38 C3N-01368 GBM RNA-Seq tumor CPT0093590006 42bbb410-9ac4-4801-bfaa-b10ad00a0a45.rna_seq.genomic.gdc_realn.bam 9310763112 BAM genomic harmonized CPTAC3 c0635b18-957d-4508-996c-175298db589f 4b111434811b3537e87f3707f6694be6 { 'aliquot_tag': 'ALQ_82de088c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01368.RNA-Seq.R1_L007.T C3N-01368 GBM RNA-Seq tumor CPT0093590006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L007_R1_001.fastq.gz 4328230752 FASTQ R1_L007 unaligned CPTAC3 f630fa32-ae23-4686-a8ae-a15d6db483cd 9414bd5c38d0445d159fa939c83deb57 { 'aliquot_tag': 'ALQ_82de088c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01368.RNA-Seq.R2_L007.T C3N-01368 GBM RNA-Seq tumor CPT0093590006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L007_R2_001.fastq.gz 4620982138 FASTQ R2_L007 unaligned CPTAC3 46c53c9c-5e19-4deb-ac15-14e198cb6031 57637139a82acd5bf8f27785319ad766 { 'aliquot_tag': 'ALQ_82de088c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01368.RNA-Seq.genomic.T.hg38 C3N-01368 GBM RNA-Seq tumor CPT0093590006 42bbb410-9ac4-4801-bfaa-b10ad00a0a45.rna_seq.genomic.gdc_realn.bam 9310763112 BAM genomic harmonized CPTAC3 4e4d4d65-4a45-4eb7-ade9-565b5e2fdbf4 4b111434811b3537e87f3707f6694be6 { 'aliquot_tag': 'ALQ_82de088c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01368.RNA-Seq.R1_L007.T C3N-01368 GBM RNA-Seq tumor CPT0093590006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L007_R1_001.fastq.gz 4328230752 FASTQ R1_L007 unaligned CPTAC3 f630fa32-ae23-4686-a8ae-a15d6db483cd 9414bd5c38d0445d159fa939c83deb57 { 'aliquot_tag': 'ALQ_82de088c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01368.RNA-Seq.R2_L007.T C3N-01368 GBM RNA-Seq tumor CPT0093590006 171205_UNC32-K00270_0069_BHN2HGBBXX_GAGTGG_S21_L007_R2_001.fastq.gz 4620982138 FASTQ R2_L007 unaligned CPTAC3 46c53c9c-5e19-4deb-ac15-14e198cb6031 57637139a82acd5bf8f27785319ad766 { 'aliquot_tag': 'ALQ_82de088c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01368.RNA-Seq.transcriptome.T.hg38 C3N-01368 GBM RNA-Seq tumor CPT0093590006 42bbb410-9ac4-4801-bfaa-b10ad00a0a45.rna_seq.transcriptome.gdc_realn.bam 10695617534 BAM transcriptome harmonized CPTAC3 7e793277-30a7-4d71-8a13-cf84a29ff7dd 1aa6b183c55ea5291ffec23b1d8b40c7 { 'aliquot_tag': 'ALQ_82de088c', 'gdc_sample_type': 'Primary Tumor' } C3N-01368.WGS.N C3N-01368 GBM WGS blood_normal CPT0093620002 CPT0093620002.WholeGenome.RP-1303.bam 66354102976 BAM aligned CPTAC3 f02a74f7-a975-43d2-8466-61e3464fec10 bd5552664e130bf180fab575c09b674c { 'aliquot_tag': 'ALQ_74f78f2a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01368.WGS.N.hg38 C3N-01368 GBM WGS blood_normal CPT0093620002 6d5370f7-a363-4450-bf90-ade4abfee224_wgs_gdc_realn.bam 98468146967 BAM harmonized CPTAC3 ac39fb69-64aa-44e4-b308-e41df3a974eb 8243352d3007466757a15c62c9ef79dc { 'aliquot_tag': 'ALQ_74f78f2a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25367,9 +27300,9 @@ C3N-01369.MethArray.Red.T C3N-01369 GBM Methylation Array tumor CPT0162020006 20 C3N-01369.miRNA-Seq.T C3N-01369 GBM miRNA-Seq tumor CPT0162020009 181108_UNC31-K00269_0162_AH255GBBXY_ACAGTG_S29_L002_R1_001.unaln.bam 249909268 BAM unaligned CPTAC3 4feafe9e-3f1a-4f34-875b-1e4462857a7a cfa2d1b964f660abbd733f412dcfe622 { 'aliquot_tag': 'ALQ_5d50b8e4', 'gdc_sample_type': 'Primary Tumor' } C3N-01369.miRNA-Seq.T.hg38 C3N-01369 GBM miRNA-Seq tumor CPT0162020009 fb2fe162-6142-457b-86e9-a0be878100e9_mirnaseq_gdc_realn.bam 294909764 BAM harmonized CPTAC3 3f90d054-764d-43f2-94c7-d2adcf799eb9 29b55aa5de1d0461cd57e48b51e7043f { 'aliquot_tag': 'ALQ_5d50b8e4', 'gdc_sample_type': 'Primary Tumor' } C3N-01369.RNA-Seq.chimeric.T.hg38 C3N-01369 GBM RNA-Seq tumor CPT0162020009 e4849427-d3e6-4a19-bc77-00757e13d336.rna_seq.chimeric.gdc_realn.bam 130465674 BAM chimeric harmonized CPTAC3 37939824-ab74-4c2f-99e4-63c7fd4e681c 1f923eca40746273616647da4700e242 { 'aliquot_tag': 'ALQ_5d50b8e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01369.RNA-Seq.genomic.T.hg38 C3N-01369 GBM RNA-Seq tumor CPT0162020009 e4849427-d3e6-4a19-bc77-00757e13d336.rna_seq.genomic.gdc_realn.bam 6882916972 BAM genomic harmonized CPTAC3 07416ed2-e0a2-4895-940b-ab52334e40a5 297e37f98c33c2ecd93371c96143b693 { 'aliquot_tag': 'ALQ_5d50b8e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01369.RNA-Seq.R1_L004.T C3N-01369 GBM RNA-Seq tumor CPT0162020009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACAGTG_S16_L004_R1_001.fastq.gz 3010240413 FASTQ R1_L004 unaligned CPTAC3 3ef18597-3dc6-4368-9843-ca003ca75acf 0bf983f73f6cc0dafad01a76b8d5ed30 { 'aliquot_tag': 'ALQ_5d50b8e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01369.RNA-Seq.R2_L004.T C3N-01369 GBM RNA-Seq tumor CPT0162020009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACAGTG_S16_L004_R2_001.fastq.gz 3290785428 FASTQ R2_L004 unaligned CPTAC3 3e35295e-8294-4252-9d2b-be82bacc86ba 431c3b4007bb9520c5b8bc40c31815a7 { 'aliquot_tag': 'ALQ_5d50b8e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01369.RNA-Seq.genomic.T.hg38 C3N-01369 GBM RNA-Seq tumor CPT0162020009 e4849427-d3e6-4a19-bc77-00757e13d336.rna_seq.genomic.gdc_realn.bam 6882916972 BAM genomic harmonized CPTAC3 f596ea64-0577-437c-bcb2-8c6257d1a6dd 297e37f98c33c2ecd93371c96143b693 { 'aliquot_tag': 'ALQ_5d50b8e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01369.RNA-Seq.R1_L004.T C3N-01369 GBM RNA-Seq tumor CPT0162020009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACAGTG_S16_L004_R1_001.fastq.gz 3010240413 FASTQ R1_L004 unaligned CPTAC3 3ef18597-3dc6-4368-9843-ca003ca75acf 0bf983f73f6cc0dafad01a76b8d5ed30 { 'aliquot_tag': 'ALQ_5d50b8e4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01369.RNA-Seq.R2_L004.T C3N-01369 GBM RNA-Seq tumor CPT0162020009 180502_UNC32-K00270_0094_BHTVLMBBXX_ACAGTG_S16_L004_R2_001.fastq.gz 3290785428 FASTQ R2_L004 unaligned CPTAC3 3e35295e-8294-4252-9d2b-be82bacc86ba 431c3b4007bb9520c5b8bc40c31815a7 { 'aliquot_tag': 'ALQ_5d50b8e4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-01369.RNA-Seq.transcriptome.T.hg38 C3N-01369 GBM RNA-Seq tumor CPT0162020009 e4849427-d3e6-4a19-bc77-00757e13d336.rna_seq.transcriptome.gdc_realn.bam 8846013406 BAM transcriptome harmonized CPTAC3 0ad6606d-942e-4acb-b13d-18f8c432e8fc b3b45e457f4fe12085e7566929d8a757 { 'aliquot_tag': 'ALQ_5d50b8e4', 'gdc_sample_type': 'Primary Tumor' } C3N-01369.WGS.N C3N-01369 GBM WGS blood_normal CPT0162040002 CPT0162040002.WholeGenome.RP-1303.bam 63101405834 BAM aligned CPTAC3 c17f1af8-b88f-427a-8c11-d2fdc267ff83 dc5d535f6dd81140dd614e3d0f2bf52f { 'aliquot_tag': 'ALQ_45c294cc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01369.WGS.N.hg38 C3N-01369 GBM WGS blood_normal CPT0162040002 72e8c076-6bc4-4274-b90c-188820d472a1_wgs_gdc_realn.bam 92159766724 BAM harmonized CPTAC3 00a6c8d6-d21a-47d0-860b-af54979354bf 1389aeffbf8bc566e7955ff13d1f5f83 { 'aliquot_tag': 'ALQ_45c294cc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25387,8 +27320,8 @@ C3N-01375.miRNA-Seq.T C3N-01375 PDA miRNA-Seq tumor CPT0088180007 181108_UNC31-K C3N-01375.miRNA-Seq.T.hg38 C3N-01375 PDA miRNA-Seq tumor CPT0088180007 e438227a-2590-40a3-8920-50bd71840366_mirnaseq_gdc_realn.bam 225484135 BAM harmonized CPTAC3 fe30ed2d-bbbe-442e-86b9-277fc2493de7 679e206b82c6fbf7d41f6d589379fa8f { 'aliquot_tag': 'ALQ_9d8507d8', 'gdc_sample_type': 'Primary Tumor' } C3N-01375.RNA-Seq.chimeric.T.hg38 C3N-01375 PDA RNA-Seq tumor CPT0088180007 eabd7818-81b1-4b52-bb88-b43543ccafe2.rna_seq.chimeric.gdc_realn.bam 31874418 BAM chimeric harmonized CPTAC3 5b1ac298-4889-4887-8b66-00f7d84a30d3 2be88d9239944951590b1cb0acde9293 { 'aliquot_tag': 'ALQ_9d8507d8', 'gdc_sample_type': 'Primary Tumor' } C3N-01375.RNA-Seq.genomic.T.hg38 C3N-01375 PDA RNA-Seq tumor CPT0088180007 eabd7818-81b1-4b52-bb88-b43543ccafe2.rna_seq.genomic.gdc_realn.bam 7817022860 BAM genomic harmonized CPTAC3 a4e8bb9f-4141-42fa-9e92-b23b02ac3cc7 44b3a3fbeef41ce70ff327e04a7505b0 { 'aliquot_tag': 'ALQ_9d8507d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01375.RNA-Seq.R1_L005.T C3N-01375 PDA RNA-Seq tumor CPT0088180007 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L005_R1_001.fastq.gz 4079792609 FASTQ R1_L005 unaligned CPTAC3 d647436f-5e41-4bef-a100-5c5cf00a282d 4a7e3268057559d99a0cb3852b419780 { 'aliquot_tag': 'ALQ_9d8507d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01375.RNA-Seq.R2_L005.T C3N-01375 PDA RNA-Seq tumor CPT0088180007 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L005_R2_001.fastq.gz 4393615083 FASTQ R2_L005 unaligned CPTAC3 33825407-09bb-4634-9037-685c0f893fc2 8d5e28f7553a0fcebe24664121d3ca2d { 'aliquot_tag': 'ALQ_9d8507d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01375.RNA-Seq.R1_L005.T C3N-01375 PDA RNA-Seq tumor CPT0088180007 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L005_R1_001.fastq.gz 4079792609 FASTQ R1_L005 unaligned CPTAC3 d647436f-5e41-4bef-a100-5c5cf00a282d 4a7e3268057559d99a0cb3852b419780 { 'aliquot_tag': 'ALQ_9d8507d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01375.RNA-Seq.R2_L005.T C3N-01375 PDA RNA-Seq tumor CPT0088180007 171011_UNC31-K00269_0086_AHLJLCBBXX_ATTCCT_S5_L005_R2_001.fastq.gz 4393615083 FASTQ R2_L005 unaligned CPTAC3 33825407-09bb-4634-9037-685c0f893fc2 8d5e28f7553a0fcebe24664121d3ca2d { 'aliquot_tag': 'ALQ_9d8507d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-01375.RNA-Seq.transcriptome.T.hg38 C3N-01375 PDA RNA-Seq tumor CPT0088180007 eabd7818-81b1-4b52-bb88-b43543ccafe2.rna_seq.transcriptome.gdc_realn.bam 12168102588 BAM transcriptome harmonized CPTAC3 006e4428-28f0-4ae1-a348-df8392a35b08 5b9aa7835a41c04767f1d62e93bd9b4d { 'aliquot_tag': 'ALQ_9d8507d8', 'gdc_sample_type': 'Primary Tumor' } C3N-01375.WGS.N C3N-01375 PDA WGS blood_normal CPT0088220002 CPT0088220002.WholeGenome.RP-1303.bam 71516347998 BAM aligned CPTAC3 ffa0007d-98ff-4e92-8923-3e7ec2ba18d6 febe387b671bf57219c568baa9edb538 { 'aliquot_tag': 'ALQ_21cb9958', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01375.WGS.N.hg38 C3N-01375 PDA WGS blood_normal CPT0088220002 70741c40-f272-4621-9043-296dbe5d6d26_gdc_realn.bam 105470647804 BAM harmonized CPTAC3 74338bba-fc03-4ca2-ab99-a60e1688c9c4 71e0b5c83a2b74f82cd2e3a140c97d3c { 'aliquot_tag': 'ALQ_21cb9958', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25412,11 +27345,11 @@ C3N-01378.miRNA-Seq.T C3N-01378 PDA miRNA-Seq tumor CPT0088230006 181108_UNC31-K C3N-01378.miRNA-Seq.T.hg38 C3N-01378 PDA miRNA-Seq tumor CPT0088230006 c637b37f-b474-4c0d-b7cf-91784955aef4_mirnaseq_gdc_realn.bam 264907202 BAM harmonized CPTAC3 5f667b93-d98e-4c2c-958a-4c793d0d5556 de75ca606c81ae3037fb5db05e684248 { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor' } C3N-01378.REP_7cb76a7c.WXS.T C3N-01378 PDA WXS tumor CPT0088230009_1 CPT0088230009_1.WholeExome.RP-1303.bam 56826636253 BAM aligned CPTAC3 fd65b6f1-a645-4c90-a7af-3861bc88a086 974477388fe548de4f9ba08aa147f544 { 'aliquot_tag': 'REP_7cb76a7c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Replacement DNA Aliquot' } C3N-01378.REP_7cb76a7c.WXS.T.hg38 C3N-01378 PDA WXS tumor CPT0088230009_1 5c5c012e-7eed-4f0d-bc77-1f9d3b74c574_wxs_gdc_realn.bam 77631328206 BAM harmonized CPTAC3 6822a588-19f2-42a7-94c8-7860778994db ac10041334f6105ff84f00ae1a9b0ff9 { 'aliquot_tag': 'REP_7cb76a7c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Replacement DNA Aliquot' } -C3N-01378.RNA-Seq.chimeric.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 3bc47735-8aad-4008-88ca-d974d4bd89ad.rna_seq.chimeric.gdc_realn.bam 27882221 BAM chimeric harmonized CPTAC3 4be52408-42e9-4f76-b749-f6e0d51dc934 3895612c1a4759015b12a27df96c91f2 { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01378.RNA-Seq.genomic.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 3bc47735-8aad-4008-88ca-d974d4bd89ad.rna_seq.genomic.gdc_realn.bam 8172046299 BAM genomic harmonized CPTAC3 036e1b0b-f54e-4b13-93ff-251475e68bd2 6e36c49ece198b642d3011b2af6d8b39 { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01378.RNA-Seq.R1_L005.T C3N-01378 PDA RNA-Seq tumor CPT0088230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GAGTGG_S14_L005_R1_001.fastq.gz 3535340645 FASTQ R1_L005 unaligned CPTAC3 1f3641e2-c34d-4144-b61d-c5fa1b09ac2d 9adf95f219ad47df1197f5021398979e { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01378.RNA-Seq.R2_L005.T C3N-01378 PDA RNA-Seq tumor CPT0088230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GAGTGG_S14_L005_R2_001.fastq.gz 3778168162 FASTQ R2_L005 unaligned CPTAC3 1c52e376-7d8a-42f4-b736-40f51042129f e75ee4516515fc4069d68b8072eeb678 { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01378.RNA-Seq.transcriptome.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 3bc47735-8aad-4008-88ca-d974d4bd89ad.rna_seq.transcriptome.gdc_realn.bam 9271939683 BAM transcriptome harmonized CPTAC3 69b4cd37-4cd4-4929-9f7b-623c98a39705 47461fab9e9e391574f1aca5fff2e34f { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01378.RNA-Seq.chimeric.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 576f327a-cd30-42b9-b032-84dd5e87696c.rna_seq.chimeric.gdc_realn.bam 27870489 BAM chimeric harmonized CPTAC3 22abe3f7-5962-4a00-a660-73113685e25a fd532874f816c53e30675b976ccd2238 { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01378.RNA-Seq.genomic.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 576f327a-cd30-42b9-b032-84dd5e87696c.rna_seq.genomic.gdc_realn.bam 8173233722 BAM genomic harmonized CPTAC3 011a5173-7f36-4266-a398-e0b25fa1ca2d 049afc3dc7e11d5059c630554031c20d { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01378.RNA-Seq.R1_L005.T C3N-01378 PDA RNA-Seq tumor CPT0088230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GAGTGG_S14_L005_R1_001.fastq.gz 3535340645 FASTQ R1_L005 unaligned CPTAC3 1f3641e2-c34d-4144-b61d-c5fa1b09ac2d 9adf95f219ad47df1197f5021398979e { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01378.RNA-Seq.R2_L005.T C3N-01378 PDA RNA-Seq tumor CPT0088230006 171011_UNC31-K00269_0086_AHLJLCBBXX_GAGTGG_S14_L005_R2_001.fastq.gz 3778168162 FASTQ R2_L005 unaligned CPTAC3 1c52e376-7d8a-42f4-b736-40f51042129f e75ee4516515fc4069d68b8072eeb678 { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01378.RNA-Seq.transcriptome.T.hg38 C3N-01378 PDA RNA-Seq tumor CPT0088230006 576f327a-cd30-42b9-b032-84dd5e87696c.rna_seq.transcriptome.gdc_realn.bam 10376676143 BAM transcriptome harmonized CPTAC3 c8c29822-8b74-42cd-8c48-3fe60e2eed19 2051a02a4e57341f3e8b22889960ab55 { 'aliquot_tag': 'ALQ_1bc674f1', 'gdc_sample_type': 'Primary Tumor' } C3N-01378.WGS.N C3N-01378 PDA WGS blood_normal CPT0088250002 CPT0088250002.WholeGenome.RP-1303.bam 70584946865 BAM aligned CPTAC3 d9501b60-9542-4bca-9c9a-cdd731dd7538 1c3ebfbbb637535ba7402765338b817d { 'aliquot_tag': 'ALQ_93eb4548', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01378.WGS.N.hg38 C3N-01378 PDA WGS blood_normal CPT0088250002 5c4b90b6-5f34-4f61-8ecc-ea373e4b3cb4_gdc_realn.bam 104923924743 BAM harmonized CPTAC3 4b7aae30-2635-416a-88f7-f909aa1e7eb7 9284defa40d42609837790b53ee53a8f { 'aliquot_tag': 'ALQ_93eb4548', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01378.WXS.N C3N-01378 PDA WXS blood_normal CPT0088250002 CPT0088250002.WholeExome.RP-1303.bam 26483056425 BAM aligned CPTAC3 9786455c-dea1-4ad0-92c8-cdf85e8ffa9a 4dc9f1a4b7a97ab5595ce9e2aea8ce0f { 'aliquot_tag': 'ALQ_93eb4548', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25433,11 +27366,11 @@ C3N-01379.REP_9fbd14d0.Targeted.T C3N-01379 PDA Targeted Sequencing tumor CPT008 C3N-01379.REP_9fbd14d0.Targeted.T.hg38 C3N-01379 PDA Targeted Sequencing tumor CPT0088840010_1 a163fbd1-97f0-44e8-8b1b-245624d0c527_targetedsequencing_gdc_realn.bam 7414529883 BAM harmonized CPTAC3 54859353-9a30-46f8-9e18-19fae0d798ed 190ce3ed5d64b8c1196efe7428725491 { 'aliquot_tag': 'REP_9fbd14d0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Replacement DNA Aliquot' } C3N-01379.REP_9fbd14d0.WXS.T C3N-01379 PDA WXS tumor CPT0088840010_1 CPT0088840010_1.WholeExome.RP-1303.bam 51096887089 BAM aligned CPTAC3 896a7a4e-917e-4c11-abb3-9c0c9053d7fa 1f33f0604b89a5215788b1d27c499e0c { 'aliquot_tag': 'REP_9fbd14d0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Replacement DNA Aliquot' } C3N-01379.REP_9fbd14d0.WXS.T.hg38 C3N-01379 PDA WXS tumor CPT0088840010_1 a163fbd1-97f0-44e8-8b1b-245624d0c527_wxs_gdc_realn.bam 70508072968 BAM harmonized CPTAC3 c69a480c-4977-4a71-96fe-1c54544db6e7 efb70d8a149112b44588c17fe0e46988 { 'aliquot_tag': 'REP_9fbd14d0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Replacement DNA Aliquot' } -C3N-01379.RNA-Seq.chimeric.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 05d0e3c4-841a-4401-a187-1eaacbed83c5.rna_seq.chimeric.gdc_realn.bam 32222008 BAM chimeric harmonized CPTAC3 35d599b0-b1f4-407a-b39e-14ce14073e2e e232483bb49323098cb6979642c83bda { 'aliquot_tag': 'ALQ_7f7abb11', 'gdc_sample_type': 'Primary Tumor' } -C3N-01379.RNA-Seq.genomic.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 05d0e3c4-841a-4401-a187-1eaacbed83c5.rna_seq.genomic.gdc_realn.bam 8723276522 BAM genomic harmonized CPTAC3 50910ae4-2203-49dc-82f0-3260756b4c99 dde69ec289a0651b045d226fbe90305d { 'aliquot_tag': 'ALQ_7f7abb11', 'gdc_sample_type': 'Primary Tumor' } -C3N-01379.RNA-Seq.R1_L007.T C3N-01379 PDA RNA-Seq tumor CPT0088840007 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L007_R1_001.fastq.gz 4466540867 FASTQ R1_L007 unaligned CPTAC3 d2df56fc-8a5f-4da4-989f-170e8a7f9c94 cdf8296920e3846fa9d687b2d452ca1b { 'aliquot_tag': 'ALQ_7f7abb11', 'gdc_sample_type': 'Primary Tumor' } -C3N-01379.RNA-Seq.R2_L007.T C3N-01379 PDA RNA-Seq tumor CPT0088840007 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L007_R2_001.fastq.gz 4465225732 FASTQ R2_L007 unaligned CPTAC3 480f8010-a045-4fec-93c9-3080eb0acc86 138ab6f305d5db392535c86e328e1796 { 'aliquot_tag': 'ALQ_7f7abb11', 'gdc_sample_type': 'Primary Tumor' } -C3N-01379.RNA-Seq.transcriptome.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 05d0e3c4-841a-4401-a187-1eaacbed83c5.rna_seq.transcriptome.gdc_realn.bam 10269362726 BAM transcriptome harmonized CPTAC3 62f33283-4fcf-44c2-bf52-991d79d4385a 1887dbf906ddd282e13f1cde231abad0 { 'aliquot_tag': 'ALQ_7f7abb11', 'gdc_sample_type': 'Primary Tumor' } +C3N-01379.RNA-Seq.chimeric.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 fa7deac7-3ed8-45b5-a565-2b054359f564.rna_seq.chimeric.gdc_realn.bam 32217807 BAM chimeric harmonized CPTAC3 f52b0f6d-c6ba-498d-adf3-d9865c0168ed bd484a265fa8c68dc2acdb0443e25275 { 'aliquot_tag': 'ALQ_7f7abb11', 'gdc_sample_type': 'Primary Tumor' } +C3N-01379.RNA-Seq.genomic.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 fa7deac7-3ed8-45b5-a565-2b054359f564.rna_seq.genomic.gdc_realn.bam 8724219339 BAM genomic harmonized CPTAC3 9b88ed8a-d52a-4ece-8dcb-e61581d181c4 8c4f7bf3daa2364bae506154f2f812d9 { 'aliquot_tag': 'ALQ_7f7abb11', 'gdc_sample_type': 'Primary Tumor' } +C3N-01379.RNA-Seq.R1_L007.T C3N-01379 PDA RNA-Seq tumor CPT0088840007 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L007_R1_001.fastq.gz 4466540867 FASTQ R1_L007 unaligned CPTAC3 d2df56fc-8a5f-4da4-989f-170e8a7f9c94 cdf8296920e3846fa9d687b2d452ca1b { 'aliquot_tag': 'ALQ_7f7abb11', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01379.RNA-Seq.R2_L007.T C3N-01379 PDA RNA-Seq tumor CPT0088840007 171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L007_R2_001.fastq.gz 4465225732 FASTQ R2_L007 unaligned CPTAC3 480f8010-a045-4fec-93c9-3080eb0acc86 138ab6f305d5db392535c86e328e1796 { 'aliquot_tag': 'ALQ_7f7abb11', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01379.RNA-Seq.transcriptome.T.hg38 C3N-01379 PDA RNA-Seq tumor CPT0088840007 fa7deac7-3ed8-45b5-a565-2b054359f564.rna_seq.transcriptome.gdc_realn.bam 11587137428 BAM transcriptome harmonized CPTAC3 f57c34fb-0f56-4089-b4a1-cd35e91792cf 443942b78eccad585aa17030f0c44d4a { 'aliquot_tag': 'ALQ_7f7abb11', 'gdc_sample_type': 'Primary Tumor' } C3N-01379.WGS.N C3N-01379 PDA WGS blood_normal CPT0088890001 CPT0088890001.WholeGenome.RP-1303.bam 72609021852 BAM aligned CPTAC3 64c6c23c-2369-4367-801c-0f855304c052 fe0cdc5aedd8d388a4b37478214cc64d { 'aliquot_tag': 'ALQ_6e89da95', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01379.WGS.N.hg38 C3N-01379 PDA WGS blood_normal CPT0088890001 9d162609-b371-4d3b-9491-2b071868f2e1_gdc_realn.bam 109071745709 BAM harmonized CPTAC3 f70124a7-b4c8-4b64-accf-9a34cc635e3a f016c19f93778e7d424e54968698e749 { 'aliquot_tag': 'ALQ_6e89da95', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01379.WXS.N C3N-01379 PDA WXS blood_normal CPT0088890001 CPT0088890001.WholeExome.RP-1303.bam 42473251354 BAM aligned CPTAC3 c4f3e388-9e29-4d40-9ee4-1e24e6530af7 7a5f6e875a10d66b743a54d09eaa0f09 { 'aliquot_tag': 'ALQ_6e89da95', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25451,9 +27384,9 @@ C3N-01380.ADD_235e6ff5.WXS.T.hg38 C3N-01380 PDA WXS tumor CPT0088260010 1a8d6818 C3N-01380.miRNA-Seq.T C3N-01380 PDA miRNA-Seq tumor CPT0088260007 181108_UNC31-K00269_0163_BH23TVBBXY_GATCAG_S9_L008_R1_001.unaln.bam 201245981 BAM unaligned CPTAC3 784334e9-5638-4a8f-9f6c-ba1342bbaec1 8df7bbb7c77944046663275fc709d634 { 'aliquot_tag': 'ALQ_a421cb17', 'gdc_sample_type': 'Primary Tumor' } C3N-01380.miRNA-Seq.T.hg38 C3N-01380 PDA miRNA-Seq tumor CPT0088260007 e24e5775-5795-4f87-b95b-e6ad6284712b_mirnaseq_gdc_realn.bam 223779343 BAM harmonized CPTAC3 2754e5af-3557-4d8f-97d4-0d5f94093c48 6d079f5bb5b772b9078919114c4359e1 { 'aliquot_tag': 'ALQ_a421cb17', 'gdc_sample_type': 'Primary Tumor' } C3N-01380.RNA-Seq.chimeric.T.hg38 C3N-01380 PDA RNA-Seq tumor CPT0088260007 535a71eb-0a32-4490-a401-73edb36949b7.rna_seq.chimeric.gdc_realn.bam 36232678 BAM chimeric harmonized CPTAC3 02710637-3b79-493e-a343-6ef844c422d3 4072bae2734877640195f4c4523bbdc4 { 'aliquot_tag': 'ALQ_a421cb17', 'gdc_sample_type': 'Primary Tumor' } -C3N-01380.RNA-Seq.genomic.T.hg38 C3N-01380 PDA RNA-Seq tumor CPT0088260007 535a71eb-0a32-4490-a401-73edb36949b7.rna_seq.genomic.gdc_realn.bam 7917800435 BAM genomic harmonized CPTAC3 b38a561f-298b-4d01-8865-ebac79475a1b 3ec9c1598157de75b852cd6c0e797867 { 'aliquot_tag': 'ALQ_a421cb17', 'gdc_sample_type': 'Primary Tumor' } -C3N-01380.RNA-Seq.R1_L001.T C3N-01380 PDA RNA-Seq tumor CPT0088260007 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L001_R1_001.fastq.gz 3802894924 FASTQ R1_L001 unaligned CPTAC3 ec0d2575-8b7c-4b7d-8e89-a472ee28eec6 0d95f4b996200a365a1dbd1c72224ed3 { 'aliquot_tag': 'ALQ_a421cb17', 'gdc_sample_type': 'Primary Tumor' } -C3N-01380.RNA-Seq.R2_L001.T C3N-01380 PDA RNA-Seq tumor CPT0088260007 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L001_R2_001.fastq.gz 4114549069 FASTQ R2_L001 unaligned CPTAC3 d6de1c45-d582-4677-abf6-3fe7ec0101db d04a823043887c6f17f26e8679ce17b6 { 'aliquot_tag': 'ALQ_a421cb17', 'gdc_sample_type': 'Primary Tumor' } +C3N-01380.RNA-Seq.genomic.T.hg38 C3N-01380 PDA RNA-Seq tumor CPT0088260007 535a71eb-0a32-4490-a401-73edb36949b7.rna_seq.genomic.gdc_realn.bam 7917800435 BAM genomic harmonized CPTAC3 93a6be85-5c6d-4a09-ba43-263ed7949894 3ec9c1598157de75b852cd6c0e797867 { 'aliquot_tag': 'ALQ_a421cb17', 'gdc_sample_type': 'Primary Tumor' } +C3N-01380.RNA-Seq.R1_L001.T C3N-01380 PDA RNA-Seq tumor CPT0088260007 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L001_R1_001.fastq.gz 3802894924 FASTQ R1_L001 unaligned CPTAC3 ec0d2575-8b7c-4b7d-8e89-a472ee28eec6 0d95f4b996200a365a1dbd1c72224ed3 { 'aliquot_tag': 'ALQ_a421cb17', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01380.RNA-Seq.R2_L001.T C3N-01380 PDA RNA-Seq tumor CPT0088260007 170908_UNC31-K00269_0080_BHLJ52BBXX_CTTGTA_S4_L001_R2_001.fastq.gz 4114549069 FASTQ R2_L001 unaligned CPTAC3 d6de1c45-d582-4677-abf6-3fe7ec0101db d04a823043887c6f17f26e8679ce17b6 { 'aliquot_tag': 'ALQ_a421cb17', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-01380.RNA-Seq.transcriptome.T.hg38 C3N-01380 PDA RNA-Seq tumor CPT0088260007 535a71eb-0a32-4490-a401-73edb36949b7.rna_seq.transcriptome.gdc_realn.bam 11512078718 BAM transcriptome harmonized CPTAC3 62408860-452e-47bc-be41-732bfda6898b 8b84af27f9c576fbd06442ba248003d4 { 'aliquot_tag': 'ALQ_a421cb17', 'gdc_sample_type': 'Primary Tumor' } C3N-01380.WGS.N C3N-01380 PDA WGS blood_normal CPT0088300002 CPT0088300002.WholeGenome.RP-1303.bam 64652874371 BAM aligned CPTAC3 ff9ea438-f289-48ce-bb6e-29c9c35d3cd0 b8368df7819498a8f1af1e6130869766 { 'aliquot_tag': 'ALQ_9057199d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01380.WGS.N.hg38 C3N-01380 PDA WGS blood_normal CPT0088300002 2067ab53-1961-44eb-be0e-f45c0455aa68_gdc_realn.bam 96307704857 BAM harmonized CPTAC3 c0939d37-8ae9-4f0e-a4d7-c4b43a178f19 48d912561f57aa4cf60687ad993dae29 { 'aliquot_tag': 'ALQ_9057199d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25467,8 +27400,8 @@ C3N-01381.miRNA-Seq.T C3N-01381 PDA miRNA-Seq tumor CPT0094130007 180828_UNC32-K C3N-01381.miRNA-Seq.T.hg38 C3N-01381 PDA miRNA-Seq tumor CPT0094130007 35eb68fa-7867-402e-bf76-b40739f5e337_mirnaseq_gdc_realn.bam 172426725 BAM harmonized CPTAC3 03f407e6-8bf7-4b0e-886c-73e700829e49 7895966da157d4b494841f575c5cb64f { 'aliquot_tag': 'ALQ_e15f5c23', 'gdc_sample_type': 'Primary Tumor' } C3N-01381.RNA-Seq.chimeric.T.hg38 C3N-01381 PDA RNA-Seq tumor CPT0094130007 3fa44e58-2d9f-49c0-a11a-e427df7e70a5.rna_seq.chimeric.gdc_realn.bam 37813790 BAM chimeric harmonized CPTAC3 fbb3c774-e500-4a78-898f-5511607ed243 5f7cf9e1c26c97287c380a6ab2e61800 { 'aliquot_tag': 'ALQ_e15f5c23', 'gdc_sample_type': 'Primary Tumor' } C3N-01381.RNA-Seq.genomic.T.hg38 C3N-01381 PDA RNA-Seq tumor CPT0094130007 3fa44e58-2d9f-49c0-a11a-e427df7e70a5.rna_seq.genomic.gdc_realn.bam 9500416436 BAM genomic harmonized CPTAC3 ad81b370-f623-4e05-aa6e-ba5592e7bc5c 333a0dd056ead4044f75b754b47b09d4 { 'aliquot_tag': 'ALQ_e15f5c23', 'gdc_sample_type': 'Primary Tumor' } -C3N-01381.RNA-Seq.R1_L007.T C3N-01381 PDA RNA-Seq tumor CPT0094130007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L007_R1_001.fastq.gz 4137102742 FASTQ R1_L007 unaligned CPTAC3 3d2f71c7-ee5c-4048-8b56-aa90f92ec9f3 8612f2f7ae23768a5c89821f5452c139 { 'aliquot_tag': 'ALQ_e15f5c23', 'gdc_sample_type': 'Primary Tumor' } -C3N-01381.RNA-Seq.R2_L007.T C3N-01381 PDA RNA-Seq tumor CPT0094130007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L007_R2_001.fastq.gz 4378756240 FASTQ R2_L007 unaligned CPTAC3 a83cfe92-7f82-4fac-8815-11c49562e59d 02c96e92c7ab941b8d27e9e98ac5f8ce { 'aliquot_tag': 'ALQ_e15f5c23', 'gdc_sample_type': 'Primary Tumor' } +C3N-01381.RNA-Seq.R1_L007.T C3N-01381 PDA RNA-Seq tumor CPT0094130007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L007_R1_001.fastq.gz 4137102742 FASTQ R1_L007 unaligned CPTAC3 3d2f71c7-ee5c-4048-8b56-aa90f92ec9f3 8612f2f7ae23768a5c89821f5452c139 { 'aliquot_tag': 'ALQ_e15f5c23', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01381.RNA-Seq.R2_L007.T C3N-01381 PDA RNA-Seq tumor CPT0094130007 171205_UNC32-K00270_0069_BHN2HGBBXX_ACTGAT_S22_L007_R2_001.fastq.gz 4378756240 FASTQ R2_L007 unaligned CPTAC3 a83cfe92-7f82-4fac-8815-11c49562e59d 02c96e92c7ab941b8d27e9e98ac5f8ce { 'aliquot_tag': 'ALQ_e15f5c23', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01381.RNA-Seq.transcriptome.T.hg38 C3N-01381 PDA RNA-Seq tumor CPT0094130007 3fa44e58-2d9f-49c0-a11a-e427df7e70a5.rna_seq.transcriptome.gdc_realn.bam 10860409878 BAM transcriptome harmonized CPTAC3 c7432bcf-9fff-4ce5-b7ae-00d6f35f39d5 eda08f2cc4a718634c61e3fcb83b8d2f { 'aliquot_tag': 'ALQ_e15f5c23', 'gdc_sample_type': 'Primary Tumor' } C3N-01381.WGS.N C3N-01381 PDA WGS blood_normal CPT0094170002 CPT0094170002.WholeGenome.RP-1303.bam 67383714619 BAM aligned CPTAC3 caef7227-8a1e-4974-96d9-3c14bd5d1bca 553e2e3669883c95fb18f978c1eb01aa { 'aliquot_tag': 'ALQ_64b50e6c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01381.WGS.N.hg38 C3N-01381 PDA WGS blood_normal CPT0094170002 ca006e8d-b3d7-4bcc-a0a2-f0c274572f6c_wgs_gdc_realn.bam 100708359366 BAM harmonized CPTAC3 1bc1098d-01cf-4166-9e4b-baadf195614a 1eb3cb8d52c3a4e5429a60dba982d560 { 'aliquot_tag': 'ALQ_64b50e6c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25486,8 +27419,8 @@ C3N-01382.miRNA-Seq.T C3N-01382 PDA miRNA-Seq tumor CPT0094180006 180828_UNC32-K C3N-01382.miRNA-Seq.T.hg38 C3N-01382 PDA miRNA-Seq tumor CPT0094180006 2175ca8c-4f7a-466f-8adc-6d084f5ad60f_mirnaseq_gdc_realn.bam 192142620 BAM harmonized CPTAC3 9186f778-53ef-4196-ba94-6c75f4fb9615 9132e6767de7a71c8341a5155c898068 { 'aliquot_tag': 'ALQ_e1885da4', 'gdc_sample_type': 'Primary Tumor' } C3N-01382.RNA-Seq.chimeric.T.hg38 C3N-01382 PDA RNA-Seq tumor CPT0094180006 e77c8936-fef6-4053-8477-05f4ee8bb9f2.rna_seq.chimeric.gdc_realn.bam 30332158 BAM chimeric harmonized CPTAC3 adae2836-7ece-4f9f-b7b1-ba7d1aced942 3aa0ff22c6e7566c743ac9141946fc47 { 'aliquot_tag': 'ALQ_e1885da4', 'gdc_sample_type': 'Primary Tumor' } C3N-01382.RNA-Seq.genomic.T.hg38 C3N-01382 PDA RNA-Seq tumor CPT0094180006 e77c8936-fef6-4053-8477-05f4ee8bb9f2.rna_seq.genomic.gdc_realn.bam 8387368398 BAM genomic harmonized CPTAC3 b2d49af0-25a0-4b86-9bae-b64063d76810 2e34ddc6750a0427eb34f15d983283a7 { 'aliquot_tag': 'ALQ_e1885da4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01382.RNA-Seq.R1_L007.T C3N-01382 PDA RNA-Seq tumor CPT0094180006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATTCCT_S23_L007_R1_001.fastq.gz 3671703287 FASTQ R1_L007 unaligned CPTAC3 7f004367-61a4-4947-b979-d566027ccff3 a99614e507b74a39a88a617f82126ab2 { 'aliquot_tag': 'ALQ_e1885da4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01382.RNA-Seq.R2_L007.T C3N-01382 PDA RNA-Seq tumor CPT0094180006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATTCCT_S23_L007_R2_001.fastq.gz 3950980653 FASTQ R2_L007 unaligned CPTAC3 dc54c3f6-54c2-42ec-bea0-2faa46a88684 a99a9fd05054287aa8d91af1b4338c7f { 'aliquot_tag': 'ALQ_e1885da4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01382.RNA-Seq.R1_L007.T C3N-01382 PDA RNA-Seq tumor CPT0094180006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATTCCT_S23_L007_R1_001.fastq.gz 3671703287 FASTQ R1_L007 unaligned CPTAC3 7f004367-61a4-4947-b979-d566027ccff3 a99614e507b74a39a88a617f82126ab2 { 'aliquot_tag': 'ALQ_e1885da4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01382.RNA-Seq.R2_L007.T C3N-01382 PDA RNA-Seq tumor CPT0094180006 171205_UNC32-K00270_0069_BHN2HGBBXX_ATTCCT_S23_L007_R2_001.fastq.gz 3950980653 FASTQ R2_L007 unaligned CPTAC3 dc54c3f6-54c2-42ec-bea0-2faa46a88684 a99a9fd05054287aa8d91af1b4338c7f { 'aliquot_tag': 'ALQ_e1885da4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01382.RNA-Seq.transcriptome.T.hg38 C3N-01382 PDA RNA-Seq tumor CPT0094180006 e77c8936-fef6-4053-8477-05f4ee8bb9f2.rna_seq.transcriptome.gdc_realn.bam 10432685066 BAM transcriptome harmonized CPTAC3 a608a823-3517-4136-b081-8d803eb49253 ed64294ad2c15b0c457e03c06b1bc04d { 'aliquot_tag': 'ALQ_e1885da4', 'gdc_sample_type': 'Primary Tumor' } C3N-01382.Targeted.T C3N-01382 PDA Targeted Sequencing tumor CPT0094180009_1 CPT0094180009_1.CustomSelection.RP-1303.PDO-18786.bam 3020848472 BAM aligned CPTAC3 3cb1732f-7645-4880-aa90-ed0302aaecc3 f59d8461ae9eb56adc6920b52ce169bc { 'aliquot_tag': 'ALQ_f9c9a14f', 'gdc_sample_type': 'Primary Tumor' } C3N-01382.Targeted.T.hg38 C3N-01382 PDA Targeted Sequencing tumor CPT0094180009_1 716a0ff5-1a12-4918-8722-0a0961742aca_targetedsequencing_gdc_realn.bam 4275003724 BAM harmonized CPTAC3 846e60ad-8d47-4e2e-a5bb-db5c166ff39a 6dd2aa5a45b3a9a7d82cb9a43495d26b { 'aliquot_tag': 'ALQ_f9c9a14f', 'gdc_sample_type': 'Primary Tumor' } @@ -25507,8 +27440,8 @@ C3N-01383.miRNA-Seq.T C3N-01383 PDA miRNA-Seq tumor CPT0094230007 181108_UNC31-K C3N-01383.miRNA-Seq.T.hg38 C3N-01383 PDA miRNA-Seq tumor CPT0094230007 49cf8729-f504-4924-b59c-0dc25a1f8ec5_mirnaseq_gdc_realn.bam 243541612 BAM harmonized CPTAC3 a309309f-1345-4e05-9bc8-8a221f59cc19 21562e8b2d203f5ad754d55eaa0686b5 { 'aliquot_tag': 'ALQ_67cb2e8d', 'gdc_sample_type': 'Primary Tumor' } C3N-01383.RNA-Seq.chimeric.T.hg38 C3N-01383 PDA RNA-Seq tumor CPT0094230007 e605c7c0-67d0-444d-aec5-237a6a0594b9.rna_seq.chimeric.gdc_realn.bam 78609569 BAM chimeric harmonized CPTAC3 cb4265c3-5b98-4596-a8b8-eeda70b47c1a 6ecfdd1a02ecfadd5dacbac01248184a { 'aliquot_tag': 'ALQ_67cb2e8d', 'gdc_sample_type': 'Primary Tumor' } C3N-01383.RNA-Seq.genomic.T.hg38 C3N-01383 PDA RNA-Seq tumor CPT0094230007 e605c7c0-67d0-444d-aec5-237a6a0594b9.rna_seq.genomic.gdc_realn.bam 6908381416 BAM genomic harmonized CPTAC3 e6c8c765-6bca-4736-bec7-e8bc5bcdfe3b 06480b1c6a8ffc3ce7027cf094e3a455 { 'aliquot_tag': 'ALQ_67cb2e8d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01383.RNA-Seq.R1_L008.T C3N-01383 PDA RNA-Seq tumor CPT0094230007 171107_UNC32-K00270_0063_BHLNTCBBXX_ATCACG_S62_L008_R1_001.fastq.gz 3141757925 FASTQ R1_L008 unaligned CPTAC3 4aafb23a-721d-4b1e-8870-b7720430d5b4 108a6b744a34d413c9d9c42e8b9eb02a { 'aliquot_tag': 'ALQ_67cb2e8d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01383.RNA-Seq.R2_L008.T C3N-01383 PDA RNA-Seq tumor CPT0094230007 171107_UNC32-K00270_0063_BHLNTCBBXX_ATCACG_S62_L008_R2_001.fastq.gz 3227545193 FASTQ R2_L008 unaligned CPTAC3 20ee2a89-2e2a-4d7e-8720-aea154e103ee 00c685fd5353e9d9031ce17182a42242 { 'aliquot_tag': 'ALQ_67cb2e8d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01383.RNA-Seq.R1_L008.T C3N-01383 PDA RNA-Seq tumor CPT0094230007 171107_UNC32-K00270_0063_BHLNTCBBXX_ATCACG_S62_L008_R1_001.fastq.gz 3141757925 FASTQ R1_L008 unaligned CPTAC3 4aafb23a-721d-4b1e-8870-b7720430d5b4 108a6b744a34d413c9d9c42e8b9eb02a { 'aliquot_tag': 'ALQ_67cb2e8d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01383.RNA-Seq.R2_L008.T C3N-01383 PDA RNA-Seq tumor CPT0094230007 171107_UNC32-K00270_0063_BHLNTCBBXX_ATCACG_S62_L008_R2_001.fastq.gz 3227545193 FASTQ R2_L008 unaligned CPTAC3 20ee2a89-2e2a-4d7e-8720-aea154e103ee 00c685fd5353e9d9031ce17182a42242 { 'aliquot_tag': 'ALQ_67cb2e8d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01383.RNA-Seq.transcriptome.T.hg38 C3N-01383 PDA RNA-Seq tumor CPT0094230007 e605c7c0-67d0-444d-aec5-237a6a0594b9.rna_seq.transcriptome.gdc_realn.bam 8513872118 BAM transcriptome harmonized CPTAC3 2cbc7df3-30df-4747-b471-f2ae936f025f 026ac4c0dfac3f17a8f3ae3ba5c6091b { 'aliquot_tag': 'ALQ_67cb2e8d', 'gdc_sample_type': 'Primary Tumor' } C3N-01383.WGS.N C3N-01383 PDA WGS blood_normal CPT0094270002 CPT0094270002.WholeGenome.RP-1303.bam 69143468893 BAM aligned CPTAC3 d4706d1d-186f-462f-9549-d32a8fa0eaf8 9e036bf65484c778d92360653ab502f5 { 'aliquot_tag': 'ALQ_e2217cc2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01383.WGS.N.hg38 C3N-01383 PDA WGS blood_normal CPT0094270002 004f4cdd-b07f-4986-83ec-2288789ae627_wgs_gdc_realn.bam 101919368086 BAM harmonized CPTAC3 f9baed66-1006-4294-b2c3-6228c7f4087f 021233cd75eb056166901bc66c92eb87 { 'aliquot_tag': 'ALQ_e2217cc2', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25520,35 +27453,47 @@ C3N-01383.WXS.T C3N-01383 PDA WXS tumor CPT0094230010_1 CPT0094230010_1.WholeExo C3N-01383.WXS.T C3N-01383 PDA WXS tumor CPT0094230010 CPT0094230010.WholeExome.RP-1303.bam 33550097648 BAM aligned CPTAC3 1185b335-7de3-4b81-a782-0517d9ee4a90 2877d811cc7491fd9714dd671ecd6c39 { 'aliquot_tag': 'ALQ_e0b48a6f', 'gdc_sample_type': 'Primary Tumor' } C3N-01383.WXS.T.hg38 C3N-01383 PDA WXS tumor CPT0094230010_1 75bb8fa6-86ac-434f-afd7-12332afe19f1_wxs_gdc_realn.bam 78814281670 BAM harmonized CPTAC3 1981d72f-4966-4b2c-9ee7-845c9791f6d9 728c5b3861b1f07552fd9bf872fcf35d { 'aliquot_tag': 'ALQ_c22caebc', 'gdc_sample_type': 'Primary Tumor' } C3N-01383.WXS.T.hg38 C3N-01383 PDA WXS tumor CPT0094230010 84eb0d82-6640-4db2-a981-44810476cca7_wxs_gdc_realn.bam 46403245903 BAM harmonized CPTAC3 1c05d345-e7e0-4082-a3b3-f60c51ffe779 154930efd7d8f6074e5614a93485ff6e { 'aliquot_tag': 'ALQ_e0b48a6f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01385.ANN_1fce52dd.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 81893f59-95eb-4d38-8789-dddb580d6d3f.rna_seq.chimeric.gdc_realn.bam 226163921 BAM chimeric harmonized CPTAC3 4c42e26b-8905-4733-9ac2-633127a1d109 280da2114180da1e16a119ad28ddd8c5 { 'aliquot_tag': 'ANN_1fce52dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01385.ANN_1fce52dd.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 81893f59-95eb-4d38-8789-dddb580d6d3f.rna_seq.genomic.gdc_realn.bam 13691636489 BAM genomic harmonized CPTAC3 307b4934-d214-4c65-91f8-75cd047bf8d5 bf87040b838d26ab3ca569a9c9072c3b { 'aliquot_tag': 'ANN_1fce52dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01385.ANN_1fce52dd.RNA-Seq.R1_L008.T C3N-01385 PDA RNA-Seq tumor CPT0162230029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACACTAAG-ATCCATAT_S12_L008_R1_001.fastq.gz 4922822305 FASTQ R1_L008 unaligned CPTAC3 4799b1ce-1a07-4ab4-a176-22371dbfbba7 e40d4a33f316383866d4af07cfbf7e9a { 'aliquot_tag': 'ANN_1fce52dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01385.ANN_1fce52dd.RNA-Seq.R2_L008.T C3N-01385 PDA RNA-Seq tumor CPT0162230029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACACTAAG-ATCCATAT_S12_L008_R2_001.fastq.gz 5749298642 FASTQ R2_L008 unaligned CPTAC3 6b5fe0a9-edcc-4108-86a3-d2f6c034e8cf 4429ae00d936c07b0072846ab6237749 { 'aliquot_tag': 'ANN_1fce52dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01385.ANN_1fce52dd.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 81893f59-95eb-4d38-8789-dddb580d6d3f.rna_seq.transcriptome.gdc_realn.bam 11587883646 BAM transcriptome harmonized CPTAC3 5b3c9db5-9a66-43c4-a362-36d64ed8c32b 09a166ddef7142ba6c6774521d548511 { 'aliquot_tag': 'ANN_1fce52dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01385.ANN_1fce52dd.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 8ff0467a-1e8a-4e07-a2ef-0834cfffef0f.rna_seq.chimeric.gdc_realn.bam 226207500 BAM chimeric harmonized CPTAC3 cdc1018d-8a77-45b4-868e-5a9cf4e98bc8 bad284ba4f1cb7160fff2ab1a777e14f { 'aliquot_tag': 'ANN_1fce52dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01385.ANN_1fce52dd.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 8ff0467a-1e8a-4e07-a2ef-0834cfffef0f.rna_seq.genomic.gdc_realn.bam 13718131555 BAM genomic harmonized CPTAC3 95192e38-4089-4992-9714-15e6341f32e8 fc785285f0d541cf5bfb81d91e070149 { 'aliquot_tag': 'ANN_1fce52dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01385.ANN_1fce52dd.RNA-Seq.R1_L008.T C3N-01385 PDA RNA-Seq tumor CPT0162230029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACACTAAG-ATCCATAT_S12_L008_R1_001.fastq.gz 4922822305 FASTQ R1_L008 unaligned CPTAC3 4799b1ce-1a07-4ab4-a176-22371dbfbba7 e40d4a33f316383866d4af07cfbf7e9a { 'aliquot_tag': 'ANN_1fce52dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L008' } +C3N-01385.ANN_1fce52dd.RNA-Seq.R2_L008.T C3N-01385 PDA RNA-Seq tumor CPT0162230029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACACTAAG-ATCCATAT_S12_L008_R2_001.fastq.gz 5749298642 FASTQ R2_L008 unaligned CPTAC3 6b5fe0a9-edcc-4108-86a3-d2f6c034e8cf 4429ae00d936c07b0072846ab6237749 { 'aliquot_tag': 'ANN_1fce52dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L008' } +C3N-01385.ANN_1fce52dd.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230029 8ff0467a-1e8a-4e07-a2ef-0834cfffef0f.rna_seq.transcriptome.gdc_realn.bam 12920665947 BAM transcriptome harmonized CPTAC3 52428fb9-9b94-4d37-8277-16bf870b3371 f9bbca53831b9f2821048dd8fd4c7244 { 'aliquot_tag': 'ANN_1fce52dd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01385.DUP_372589e6.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230044 2d5e1bb8-04e7-4948-b224-f3c1e26f0c54.rna_seq.chimeric.gdc_realn.bam 359260558 BAM chimeric harmonized CPTAC3 76f6802a-bd8b-421d-bd20-ee975632472c a0939de1d3bae16876f220467c0c9cc3 { 'aliquot_tag': 'DUP_372589e6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01385.DUP_372589e6.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230044 2d5e1bb8-04e7-4948-b224-f3c1e26f0c54.rna_seq.genomic.gdc_realn.bam 9625668394 BAM genomic harmonized CPTAC3 a945d670-4c9f-43fc-ad70-2a55e91ac42a d3d3fcd6c5f9f105d11da15c8a48c811 { 'aliquot_tag': 'DUP_372589e6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01385.DUP_372589e6.RNA-Seq.R1_L007.T C3N-01385 PDA RNA-Seq tumor CPT0162230044 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R1_001.fastq.gz 4090842586 FASTQ R1_L007 unaligned CPTAC3 4d478481-1d87-42c7-84a4-4fe6a10af11e 531494711a9f323896eaa161207048be { 'aliquot_tag': 'DUP_372589e6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L007' } +C3N-01385.DUP_372589e6.RNA-Seq.R2_L007.T C3N-01385 PDA RNA-Seq tumor CPT0162230044 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R2_001.fastq.gz 4485418671 FASTQ R2_L007 unaligned CPTAC3 834c0da9-860f-4786-b9c4-e284f94aafd3 59bc5bdca8f55f5d4e63bcd8490cc0fb { 'aliquot_tag': 'DUP_372589e6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L007' } +C3N-01385.DUP_372589e6.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230044 2d5e1bb8-04e7-4948-b224-f3c1e26f0c54.rna_seq.transcriptome.gdc_realn.bam 10501613940 BAM transcriptome harmonized CPTAC3 47dfaee1-5d2e-41ff-8d98-13d1b3434611 2874e03957ebf61d42ad3b99ac8575b8 { 'aliquot_tag': 'DUP_372589e6', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01385.DUP_474f7d69.RNA-Seq.chimeric.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230041 a6cb7ee5-f6cc-4273-88ee-e828d009a9fe.rna_seq.chimeric.gdc_realn.bam 311818603 BAM chimeric harmonized CPTAC3 2536675f-fc6e-497e-9d3b-04d92808b820 9e62786c0bfd6e9e7808c8951be3a4c8 { 'aliquot_tag': 'DUP_474f7d69', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01385.DUP_474f7d69.RNA-Seq.genomic.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230041 a6cb7ee5-f6cc-4273-88ee-e828d009a9fe.rna_seq.genomic.gdc_realn.bam 9278738172 BAM genomic harmonized CPTAC3 2f15cfd5-a1c6-4b4e-8d38-6830695f665b 5b29715a1a1007f0ec3b2fe8c382156e { 'aliquot_tag': 'DUP_474f7d69', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01385.DUP_474f7d69.RNA-Seq.R1_L004.T C3N-01385 PDA RNA-Seq tumor CPT0162230041 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L004_R1_001.fastq.gz 4147996894 FASTQ R1_L004 unaligned CPTAC3 6754775d-8884-41a2-9936-3eb2eda29880 90699fdcc948b05ce736b67a622c0d6d { 'aliquot_tag': 'DUP_474f7d69', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L004' } +C3N-01385.DUP_474f7d69.RNA-Seq.R2_L004.T C3N-01385 PDA RNA-Seq tumor CPT0162230041 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L004_R2_001.fastq.gz 4437956168 FASTQ R2_L004 unaligned CPTAC3 4868e68c-f845-4d95-96cb-26fb4792d981 8409828892bd32256b640e99dfbbaad9 { 'aliquot_tag': 'DUP_474f7d69', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L004' } +C3N-01385.DUP_474f7d69.RNA-Seq.transcriptome.T.hg38 C3N-01385 PDA RNA-Seq tumor CPT0162230041 a6cb7ee5-f6cc-4273-88ee-e828d009a9fe.rna_seq.transcriptome.gdc_realn.bam 12085857456 BAM transcriptome harmonized CPTAC3 578953f3-fc7c-4276-ae06-05f09fd1cb65 2bcd6625a7429fbc809d161610ac6e5e { 'aliquot_tag': 'DUP_474f7d69', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-01385.DUP_78641f21.WXS.T C3N-01385 PDA WXS tumor CPT0162230034 CPT0162230034.WholeExome.RP-1303.bam 22816485192 BAM aligned CPTAC3 da32c776-50a1-4373-a4c2-5b8befbd9122 207c3389286de36ec40420c50710b18e { 'aliquot_tag': 'DUP_78641f21', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01385.DUP_78641f21.WXS.T.hg38 C3N-01385 PDA WXS tumor CPT0162230034 2fa1cac6-09d3-406e-beb5-a1aba56cad25_wxs_gdc_realn.bam 31451370608 BAM harmonized CPTAC3 5b16b6f6-21e2-4afa-aa5f-e8a8125fbc8e b2881ce35f4179253c4ae25299a995c4 { 'aliquot_tag': 'DUP_78641f21', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01385.DUP_966a7e0d.WXS.T C3N-01385 PDA WXS tumor CPT0162230036 CPT0162230036.WholeExome.RP-1303.bam 26161139730 BAM aligned CPTAC3 e1b5f91a-5928-4da3-81d8-a01557a0aa4e bcdec209441a8672cd6bc3aa356f298e { 'aliquot_tag': 'DUP_966a7e0d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01385.DUP_966a7e0d.WXS.T.hg38 C3N-01385 PDA WXS tumor CPT0162230036 6d940223-932d-461f-beb3-6d67db47e55a_wxs_gdc_realn.bam 36220976322 BAM harmonized CPTAC3 1ca05fe4-bece-4c80-a094-6019cee40817 95bb08fcc16627d21cd0aaf194a212c1 { 'aliquot_tag': 'DUP_966a7e0d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-01385.DUP_c80f88c9.RNA-Seq.chimeric.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 ab8eb867-e590-4f4b-ba21-1691bb035219.rna_seq.chimeric.gdc_realn.bam 493712376 BAM chimeric harmonized CPTAC3 5e87a61e-b877-46da-95f4-eb00a7e2ca6a a1684d8122ff7106a947afa8ecff7bc7 { 'aliquot_tag': 'DUP_c80f88c9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01385.DUP_c80f88c9.RNA-Seq.genomic.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 ab8eb867-e590-4f4b-ba21-1691bb035219.rna_seq.genomic.gdc_realn.bam 10071795458 BAM genomic harmonized CPTAC3 cafcc6fd-dc05-47f3-83c5-9c96f3ce1ddc bf2afc29fe17eb769032b23a278bddb9 { 'aliquot_tag': 'DUP_c80f88c9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01385.DUP_c80f88c9.RNA-Seq.R1_L007.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 220114_UNC32-K00270_0310_AHMWT5BBXY_ATGTAAGT-ACTCTATG_S21_L007_R1_001.fastq.gz 4629280859 FASTQ R1_L007 unaligned CPTAC3 644d96f4-48fe-4542-a0a2-4d8c57c9e30f 4ef20835275ed5fe03aa6e0812a9e349 { 'aliquot_tag': 'DUP_c80f88c9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L007' } +C3N-01385.DUP_c80f88c9.RNA-Seq.R2_L007.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 220114_UNC32-K00270_0310_AHMWT5BBXY_ATGTAAGT-ACTCTATG_S21_L007_R2_001.fastq.gz 4962339053 FASTQ R2_L007 unaligned CPTAC3 cb401ca0-5cd6-4ce5-aebd-4b551f5a80d8 0b390d69899fe7987fbc8ca790747837 { 'aliquot_tag': 'DUP_c80f88c9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L007' } +C3N-01385.DUP_c80f88c9.RNA-Seq.transcriptome.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 ab8eb867-e590-4f4b-ba21-1691bb035219.rna_seq.transcriptome.gdc_realn.bam 11383955527 BAM transcriptome harmonized CPTAC3 bb161611-c22f-4055-a3a7-7417b5c61d37 40fe7021e7247778ab089326fb3ea749 { 'aliquot_tag': 'DUP_c80f88c9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-01385.DUP_f09af176.WXS.N C3N-01385 PDA WXS blood_normal CPT0162290002 CPT0162290002.WholeExome.RP-1303.bam 25869310081 BAM aligned CPTAC3 e1b37e53-40cc-49b6-b6b2-f61346178321 b0f22a45b963395aee654be5cef8d532 { 'aliquot_tag': 'DUP_f09af176', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01385.DUP_f09af176.WXS.N.hg38 C3N-01385 PDA WXS blood_normal CPT0162290002 2efe54c6-fdcb-45cc-ae06-81f1cf61b2a4_wxs_gdc_realn.bam 35784079661 BAM harmonized CPTAC3 7866fc75-788c-4deb-82d1-a43664538634 064a57e2161225d87cfe4ca532fc543e { 'aliquot_tag': 'DUP_f09af176', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01385.DUP_f632fb7.WXS.T C3N-01385 PDA WXS tumor CPT0162230035 CPT0162230035.WholeExome.RP-1303.bam 27689153191 BAM aligned CPTAC3 94a94d49-63d9-44c2-84a8-17556f036fd4 0c2ea9f5720983d3f09e9aa1db8d1868 { 'aliquot_tag': 'DUP_f632fb7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01385.DUP_f632fb7.WXS.T.hg38 C3N-01385 PDA WXS tumor CPT0162230035 baa11028-3f28-4117-bbb7-0f9803198041_wxs_gdc_realn.bam 38644917533 BAM harmonized CPTAC3 2d352beb-1df6-4761-8407-fab451d80e21 c68969b77681d989b50f06c7280575f7 { 'aliquot_tag': 'DUP_f632fb7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3N-01385.RNA-Seq.R1_L004.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L004_R1_001.fastq.gz 4650700932 FASTQ R1_L004 unaligned CPTAC3 ad698e55-b953-44e1-8faf-7e53aff97f22 efdcf8728560ba5d9be657d1fac32957 { 'aliquot_tag': 'ALQ_fe92a6aa', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01385.RNA-Seq.R1_L004.T C3N-01385 PDA RNA-Seq tumor CPT0162230041 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L004_R1_001.fastq.gz 4147996894 FASTQ R1_L004 unaligned CPTAC3 6754775d-8884-41a2-9936-3eb2eda29880 90699fdcc948b05ce736b67a622c0d6d { 'aliquot_tag': 'ALQ_474f7d69', 'gdc_sample_type': 'Primary Tumor' } -C3N-01385.RNA-Seq.R1_L007.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 220114_UNC32-K00270_0310_AHMWT5BBXY_ATGTAAGT-ACTCTATG_S21_L007_R1_001.fastq.gz 4629280859 FASTQ R1_L007 unaligned CPTAC3 644d96f4-48fe-4542-a0a2-4d8c57c9e30f 4ef20835275ed5fe03aa6e0812a9e349 { 'aliquot_tag': 'ALQ_c80f88c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01385.RNA-Seq.R1_L007.T C3N-01385 PDA RNA-Seq tumor CPT0162230044 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R1_001.fastq.gz 4090842586 FASTQ R1_L007 unaligned CPTAC3 4d478481-1d87-42c7-84a4-4fe6a10af11e 531494711a9f323896eaa161207048be { 'aliquot_tag': 'ALQ_372589e6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01385.RNA-Seq.R2_L004.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L004_R2_001.fastq.gz 4756392003 FASTQ R2_L004 unaligned CPTAC3 aa32ebc3-a36d-415e-ba0d-4e06836a9747 9a16f0d1a6b673e6d3aecf36982b33d4 { 'aliquot_tag': 'ALQ_fe92a6aa', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01385.RNA-Seq.R2_L004.T C3N-01385 PDA RNA-Seq tumor CPT0162230041 220114_UNC32-K00270_0310_AHMWT5BBXY_CCGCGGTT-AGCGCTAG_S2_L004_R2_001.fastq.gz 4437956168 FASTQ R2_L004 unaligned CPTAC3 4868e68c-f845-4d95-96cb-26fb4792d981 8409828892bd32256b640e99dfbbaad9 { 'aliquot_tag': 'ALQ_474f7d69', 'gdc_sample_type': 'Primary Tumor' } -C3N-01385.RNA-Seq.R2_L007.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250041 220114_UNC32-K00270_0310_AHMWT5BBXY_ATGTAAGT-ACTCTATG_S21_L007_R2_001.fastq.gz 4962339053 FASTQ R2_L007 unaligned CPTAC3 cb401ca0-5cd6-4ce5-aebd-4b551f5a80d8 0b390d69899fe7987fbc8ca790747837 { 'aliquot_tag': 'ALQ_c80f88c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01385.RNA-Seq.R2_L007.T C3N-01385 PDA RNA-Seq tumor CPT0162230044 220114_UNC32-K00270_0310_AHMWT5BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R2_001.fastq.gz 4485418671 FASTQ R2_L007 unaligned CPTAC3 834c0da9-860f-4786-b9c4-e284f94aafd3 59bc5bdca8f55f5d4e63bcd8490cc0fb { 'aliquot_tag': 'ALQ_372589e6', 'gdc_sample_type': 'Primary Tumor' } +C3N-01385.DUP_fe92a6aa.RNA-Seq.chimeric.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 97fd1e0f-b859-495a-b598-8ca8c737788b.rna_seq.chimeric.gdc_realn.bam 295938002 BAM chimeric harmonized CPTAC3 779c4eec-e201-4968-a777-589320794991 d83fbafdabdfcb5b9d5b56ec0d0e7994 { 'aliquot_tag': 'DUP_fe92a6aa', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01385.DUP_fe92a6aa.RNA-Seq.genomic.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 97fd1e0f-b859-495a-b598-8ca8c737788b.rna_seq.genomic.gdc_realn.bam 10584499058 BAM genomic harmonized CPTAC3 f8a7bd29-c603-4e0a-b2c0-73682aae56a0 be8264157933a89e85961a759013f166 { 'aliquot_tag': 'DUP_fe92a6aa', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01385.DUP_fe92a6aa.RNA-Seq.R1_L004.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L004_R1_001.fastq.gz 4650700932 FASTQ R1_L004 unaligned CPTAC3 ad698e55-b953-44e1-8faf-7e53aff97f22 efdcf8728560ba5d9be657d1fac32957 { 'aliquot_tag': 'DUP_fe92a6aa', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L004' } +C3N-01385.DUP_fe92a6aa.RNA-Seq.R2_L004.A C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 220114_UNC32-K00270_0310_AHMWT5BBXY_TTATAACC-GATATCGA_S4_L004_R2_001.fastq.gz 4756392003 FASTQ R2_L004 unaligned CPTAC3 aa32ebc3-a36d-415e-ba0d-4e06836a9747 9a16f0d1a6b673e6d3aecf36982b33d4 { 'aliquot_tag': 'DUP_fe92a6aa', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L004' } +C3N-01385.DUP_fe92a6aa.RNA-Seq.transcriptome.A.hg38 C3N-01385 PDA RNA-Seq tissue_normal CPT0162250038 97fd1e0f-b859-495a-b598-8ca8c737788b.rna_seq.transcriptome.gdc_realn.bam 11476726041 BAM transcriptome harmonized CPTAC3 cd0ce9e2-0231-4123-8db0-305233140b2d 6ddb06e1a8bece721320b72e9cf5d44d { 'aliquot_tag': 'DUP_fe92a6aa', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-01388.MethArray.Green.T C3N-01388 PDA Methylation Array tumor CPT0088320009 202178770079_R07C01_Grn.idat 13676241 IDAT Green NA CPTAC3 40305a71-642d-4f9b-9a57-75afad6e456c f46eb3c1df3fcf5e5a974866592e7470 { 'aliquot_tag': 'ALQ_7d459375', 'gdc_sample_type': 'Primary Tumor' } C3N-01388.MethArray.Red.T C3N-01388 PDA Methylation Array tumor CPT0088320009 202178770079_R07C01_Red.idat 13676241 IDAT Red NA CPTAC3 0b33687a-fbe4-41e3-be90-b1a254a60172 dd7300f687d0023060df6bb8123b5863 { 'aliquot_tag': 'ALQ_7d459375', 'gdc_sample_type': 'Primary Tumor' } C3N-01388.miRNA-Seq.T C3N-01388 PDA miRNA-Seq tumor CPT0088320006 181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L008_R1_001.unaln.bam 270159749 BAM unaligned CPTAC3 b245afc2-1540-4b04-8cc3-a4bf672396c7 ed2f88d594cfd15afd7331c994375fc3 { 'aliquot_tag': 'ALQ_edfa8ee4', 'gdc_sample_type': 'Primary Tumor' } C3N-01388.miRNA-Seq.T.hg38 C3N-01388 PDA miRNA-Seq tumor CPT0088320006 7ef9601d-289f-47bf-9c03-a85cfd6627a4_mirnaseq_gdc_realn.bam 292719523 BAM harmonized CPTAC3 4f3c87ca-12d0-4312-9c85-7969e1b70dcd 95258ea02b2ecf659a8ec14091d36431 { 'aliquot_tag': 'ALQ_edfa8ee4', 'gdc_sample_type': 'Primary Tumor' } C3N-01388.RNA-Seq.chimeric.T.hg38 C3N-01388 PDA RNA-Seq tumor CPT0088320006 c0471b88-c0a5-4c97-890a-cbd7a4e98be7.rna_seq.chimeric.gdc_realn.bam 30446550 BAM chimeric harmonized CPTAC3 6ad23eb1-50d3-41a1-8439-8c7f7e8b6516 28ac569e8ab9f3cdd10b05288539470a { 'aliquot_tag': 'ALQ_edfa8ee4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01388.RNA-Seq.genomic.T.hg38 C3N-01388 PDA RNA-Seq tumor CPT0088320006 c0471b88-c0a5-4c97-890a-cbd7a4e98be7.rna_seq.genomic.gdc_realn.bam 7060171934 BAM genomic harmonized CPTAC3 a71c154f-6cf3-47c5-b7e7-b9f5e22a38bf 1690c7830743b27208aa120e336f1b14 { 'aliquot_tag': 'ALQ_edfa8ee4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01388.RNA-Seq.R1_L007.T C3N-01388 PDA RNA-Seq tumor CPT0088320006 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTCAA_S18_L007_R1_001.fastq.gz 3565947301 FASTQ R1_L007 unaligned CPTAC3 d6d68e19-e2e3-4034-9028-33b91eb7b2e6 ce2f1e19d2f0984d79652f0721569480 { 'aliquot_tag': 'ALQ_edfa8ee4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01388.RNA-Seq.R2_L007.T C3N-01388 PDA RNA-Seq tumor CPT0088320006 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTCAA_S18_L007_R2_001.fastq.gz 3689156636 FASTQ R2_L007 unaligned CPTAC3 1f860ad4-f10d-4483-b625-33ef1a384b81 86f3d8f4dcf610df213857e6ae0112e0 { 'aliquot_tag': 'ALQ_edfa8ee4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01388.RNA-Seq.genomic.T.hg38 C3N-01388 PDA RNA-Seq tumor CPT0088320006 c0471b88-c0a5-4c97-890a-cbd7a4e98be7.rna_seq.genomic.gdc_realn.bam 7060171934 BAM genomic harmonized CPTAC3 dce7c09e-ce8f-4543-b786-4bad5635369e 1690c7830743b27208aa120e336f1b14 { 'aliquot_tag': 'ALQ_edfa8ee4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01388.RNA-Seq.R1_L007.T C3N-01388 PDA RNA-Seq tumor CPT0088320006 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTCAA_S18_L007_R1_001.fastq.gz 3565947301 FASTQ R1_L007 unaligned CPTAC3 d6d68e19-e2e3-4034-9028-33b91eb7b2e6 ce2f1e19d2f0984d79652f0721569480 { 'aliquot_tag': 'ALQ_edfa8ee4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01388.RNA-Seq.R2_L007.T C3N-01388 PDA RNA-Seq tumor CPT0088320006 171011_UNC31-K00269_0086_AHLJLCBBXX_AGTCAA_S18_L007_R2_001.fastq.gz 3689156636 FASTQ R2_L007 unaligned CPTAC3 1f860ad4-f10d-4483-b625-33ef1a384b81 86f3d8f4dcf610df213857e6ae0112e0 { 'aliquot_tag': 'ALQ_edfa8ee4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01388.RNA-Seq.transcriptome.T.hg38 C3N-01388 PDA RNA-Seq tumor CPT0088320006 c0471b88-c0a5-4c97-890a-cbd7a4e98be7.rna_seq.transcriptome.gdc_realn.bam 10524855961 BAM transcriptome harmonized CPTAC3 d36115e7-21ea-4fd5-a2d6-cc677bd437cf 6011a692fc3a0edf80574c064b406c8e { 'aliquot_tag': 'ALQ_edfa8ee4', 'gdc_sample_type': 'Primary Tumor' } C3N-01388.WGS.N C3N-01388 PDA WGS blood_normal CPT0088350002 CPT0088350002.WholeGenome.RP-1303.bam 70002234862 BAM aligned CPTAC3 383f4e44-e015-482d-9d36-cce01bf68945 9eace5614533840ea77aed87740cf55d { 'aliquot_tag': 'ALQ_58b796ed', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01388.WGS.N.hg38 C3N-01388 PDA WGS blood_normal CPT0088350002 00c9c2c4-17af-41f7-8b2c-52691ddfbb17_gdc_realn.bam 106505980286 BAM harmonized CPTAC3 c44aedac-c110-49ff-a483-a5befa42f851 d4d3c85f4f1bcbd3529eecbfe459990a { 'aliquot_tag': 'ALQ_58b796ed', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25566,11 +27511,11 @@ C3N-01389.MethArray.Green.T C3N-01389 PDA Methylation Array tumor CPT0088360009 C3N-01389.MethArray.Red.T C3N-01389 PDA Methylation Array tumor CPT0088360009 202184900111_R04C01_Red.idat 13676246 IDAT Red NA CPTAC3 67e2dc42-f9a0-4cba-8fc3-f32299e0ce65 e859fd21244c4ac9f0cb380a92d54999 { 'aliquot_tag': 'ALQ_88c535b5', 'gdc_sample_type': 'Primary Tumor' } C3N-01389.miRNA-Seq.T C3N-01389 PDA miRNA-Seq tumor CPT0088360006 181113_UNC31-K00269_0164_AH23NNBBXY_ACTGAT_S1_L001_R1_001.unaln.bam 259020610 BAM unaligned CPTAC3 5755c7e4-1466-467c-8778-c315681177c0 b83aa502697175499021414a5c8e5b58 { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor' } C3N-01389.miRNA-Seq.T.hg38 C3N-01389 PDA miRNA-Seq tumor CPT0088360006 8a343728-fed0-4ff1-9cf4-def00289ac78_mirnaseq_gdc_realn.bam 277678019 BAM harmonized CPTAC3 4ae0d4b2-08b0-4b35-87cf-1526406925ad 71fb59318b6901d3d2cafd9646fecd60 { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor' } -C3N-01389.RNA-Seq.chimeric.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 c84643a0-a977-462f-a50b-6e4ede7f84ae.rna_seq.chimeric.gdc_realn.bam 31465302 BAM chimeric harmonized CPTAC3 7b123162-daa5-4ff1-aa3a-15fed771a9cf b8e87128635d1446bd36cb3dc35f1273 { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor' } -C3N-01389.RNA-Seq.genomic.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 c84643a0-a977-462f-a50b-6e4ede7f84ae.rna_seq.genomic.gdc_realn.bam 7753427978 BAM genomic harmonized CPTAC3 39177289-c48b-4559-b517-16b59cd320b0 6c7d17e327b6e5ec91b785dc8f04fbd2 { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor' } -C3N-01389.RNA-Seq.R1_L007.T C3N-01389 PDA RNA-Seq tumor CPT0088360006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L007_R1_001.fastq.gz 3771421183 FASTQ R1_L007 unaligned CPTAC3 58d1f578-81ac-4d30-8b4e-1e2ed7fe3286 a7a8ccd340f0e4afe1031a80faae175b { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor' } -C3N-01389.RNA-Seq.R2_L007.T C3N-01389 PDA RNA-Seq tumor CPT0088360006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L007_R2_001.fastq.gz 3956529416 FASTQ R2_L007 unaligned CPTAC3 59305e62-652d-43b6-85d4-b235093e3881 f03608c6ae37b40dac1604ca38dd7ae9 { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor' } -C3N-01389.RNA-Seq.transcriptome.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 c84643a0-a977-462f-a50b-6e4ede7f84ae.rna_seq.transcriptome.gdc_realn.bam 9069634613 BAM transcriptome harmonized CPTAC3 7b59ae9a-384c-4700-84db-f9e449d81459 faddd5590b4e4f385bf3b7d164de83f3 { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor' } +C3N-01389.RNA-Seq.chimeric.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 04339a8e-51ff-4e86-a996-0f95ee272221.rna_seq.chimeric.gdc_realn.bam 31452540 BAM chimeric harmonized CPTAC3 ec20d281-ff02-4b38-88de-8bf60691c1c9 4c39333e7a3dd543796e969df75941d1 { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor' } +C3N-01389.RNA-Seq.genomic.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 04339a8e-51ff-4e86-a996-0f95ee272221.rna_seq.genomic.gdc_realn.bam 7755144722 BAM genomic harmonized CPTAC3 d5a8897e-994f-4e25-9f29-37299de40bca 887683bbedd948c1b7d71c93a6814ef4 { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor' } +C3N-01389.RNA-Seq.R1_L007.T C3N-01389 PDA RNA-Seq tumor CPT0088360006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L007_R1_001.fastq.gz 3771421183 FASTQ R1_L007 unaligned CPTAC3 58d1f578-81ac-4d30-8b4e-1e2ed7fe3286 a7a8ccd340f0e4afe1031a80faae175b { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01389.RNA-Seq.R2_L007.T C3N-01389 PDA RNA-Seq tumor CPT0088360006 171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L007_R2_001.fastq.gz 3956529416 FASTQ R2_L007 unaligned CPTAC3 59305e62-652d-43b6-85d4-b235093e3881 f03608c6ae37b40dac1604ca38dd7ae9 { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01389.RNA-Seq.transcriptome.T.hg38 C3N-01389 PDA RNA-Seq tumor CPT0088360006 04339a8e-51ff-4e86-a996-0f95ee272221.rna_seq.transcriptome.gdc_realn.bam 10324850651 BAM transcriptome harmonized CPTAC3 5494cc9c-0e5a-4fed-8b2a-19655f617b60 96b271ba744d3c6f146e82b543ef816f { 'aliquot_tag': 'ALQ_187a2824', 'gdc_sample_type': 'Primary Tumor' } C3N-01389.WGS.N C3N-01389 PDA WGS blood_normal CPT0088400002 CPT0088400002.WholeGenome.RP-1303.bam 67179793068 BAM aligned CPTAC3 91ca11ab-433f-4538-ae82-44bd655de9a6 ad12cc27f401f71d3e44288efe2eb800 { 'aliquot_tag': 'ALQ_8d522925', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01389.WGS.N.hg38 C3N-01389 PDA WGS blood_normal CPT0088400002 b74b28ae-8f2c-4961-a8ab-4de81575097b_gdc_realn.bam 101887954760 BAM harmonized CPTAC3 60c5c8e3-3816-4784-8110-9532d490a02b b993443977cadb43533000c1c1b8610b { 'aliquot_tag': 'ALQ_8d522925', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01389.WGS.T C3N-01389 PDA WGS tumor CPT0088360009_1 CPT0088360009_1.WholeGenome.RP-1303.bam 119069502194 BAM aligned CPTAC3 f8ac924a-536f-4cd2-8530-5be672ca7d9a 54580c8909c67b386b166c8fa94e92b1 { 'aliquot_tag': 'ALQ_e2254545', 'gdc_sample_type': 'Primary Tumor' } @@ -25593,12 +27538,12 @@ C3N-01405.miRNA-Seq.T C3N-01405 LUAD miRNA-Seq tumor CPT0105330006 181113_UNC31- C3N-01405.miRNA-Seq.T.hg38 C3N-01405 LUAD miRNA-Seq tumor CPT0105330006 08d3a85a-b0b0-4618-bcc2-e42d4c876e9d_mirnaseq_gdc_realn.bam 280737432 BAM harmonized CPTAC3 5afd4992-a6a9-4b93-bd85-7a80023af84c 8080d6bad6e93cbad8fdc71f8cde93af { 'aliquot_tag': 'ALQ_75d3c962', 'gdc_sample_type': 'Primary Tumor' } C3N-01405.RNA-Seq.chimeric.A.hg38 C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 c28bea06-987d-4681-b564-21b28767d1bd.rna_seq.chimeric.gdc_realn.bam 68978623 BAM chimeric harmonized CPTAC3 1faa11f7-d857-419f-9768-19aafc81b7c9 d384cef7458ef8678e6b4973fda0af7f { 'aliquot_tag': 'ALQ_f7545f34', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01405.RNA-Seq.chimeric.T.hg38 C3N-01405 LUAD RNA-Seq tumor CPT0105330006 41d5e6f9-b24b-4389-8429-87347832460a.rna_seq.chimeric.gdc_realn.bam 37602840 BAM chimeric harmonized CPTAC3 622d70db-fac4-402c-a365-98e1fdaed3c4 48de52e659260abd1d436cc6c8538dd9 { 'aliquot_tag': 'ALQ_75d3c962', 'gdc_sample_type': 'Primary Tumor' } -C3N-01405.RNA-Seq.genomic.A.hg38 C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 c28bea06-987d-4681-b564-21b28767d1bd.rna_seq.genomic.gdc_realn.bam 9473974221 BAM genomic harmonized CPTAC3 184ad4d3-22d2-4b42-bfe8-f8666de2e247 010c7a7211c0584b1d86537cc5f0472d { 'aliquot_tag': 'ALQ_f7545f34', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01405.RNA-Seq.genomic.T.hg38 C3N-01405 LUAD RNA-Seq tumor CPT0105330006 41d5e6f9-b24b-4389-8429-87347832460a.rna_seq.genomic.gdc_realn.bam 8238322869 BAM genomic harmonized CPTAC3 83195fa0-e0d4-4169-b7f0-ac081d6ff4c0 e14569a0eef155555e80f704ed100ec9 { 'aliquot_tag': 'ALQ_75d3c962', 'gdc_sample_type': 'Primary Tumor' } -C3N-01405.RNA-Seq.R1_L003.A C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 171215_UNC32-K00270_0073_BHN3NFBBXX_ATGTCA_S12_L003_R1_001.fastq.gz 3739953418 FASTQ R1_L003 unaligned CPTAC3 cb8ddc17-af0a-41e7-938b-643b41ff9cda f1ab8b06e4a4b2a0cf0ba47db82a865a { 'aliquot_tag': 'ALQ_f7545f34', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01405.RNA-Seq.R1_L004.T C3N-01405 LUAD RNA-Seq tumor CPT0105330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 3826095376 FASTQ R1_L004 unaligned CPTAC3 e7c2e10c-7db1-4d29-a772-5dc6a9198511 f384c94d6db3d691fe71837eca7ee829 { 'aliquot_tag': 'ALQ_75d3c962', 'gdc_sample_type': 'Primary Tumor' } -C3N-01405.RNA-Seq.R2_L003.A C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 171215_UNC32-K00270_0073_BHN3NFBBXX_ATGTCA_S12_L003_R2_001.fastq.gz 4202411850 FASTQ R2_L003 unaligned CPTAC3 bb48e028-dc28-4d8b-ba9a-42e847f14a7c 61873c93a57247f6803b14fc8be85051 { 'aliquot_tag': 'ALQ_f7545f34', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01405.RNA-Seq.R2_L004.T C3N-01405 LUAD RNA-Seq tumor CPT0105330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4180720838 FASTQ R2_L004 unaligned CPTAC3 b23ecd28-c2ba-4842-9c54-36c56b344bff 95821c43c0bc81493509e62705f269fe { 'aliquot_tag': 'ALQ_75d3c962', 'gdc_sample_type': 'Primary Tumor' } +C3N-01405.RNA-Seq.genomic.A.hg38 C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 c28bea06-987d-4681-b564-21b28767d1bd.rna_seq.genomic.gdc_realn.bam 9473974221 BAM genomic harmonized CPTAC3 67096e77-5e4a-40b0-b35a-4017bda37ed6 010c7a7211c0584b1d86537cc5f0472d { 'aliquot_tag': 'ALQ_f7545f34', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01405.RNA-Seq.genomic.T.hg38 C3N-01405 LUAD RNA-Seq tumor CPT0105330006 41d5e6f9-b24b-4389-8429-87347832460a.rna_seq.genomic.gdc_realn.bam 8238322869 BAM genomic harmonized CPTAC3 d74a9201-78ef-4c56-8d32-c212ca77b6e8 e14569a0eef155555e80f704ed100ec9 { 'aliquot_tag': 'ALQ_75d3c962', 'gdc_sample_type': 'Primary Tumor' } +C3N-01405.RNA-Seq.R1_L003.A C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 171215_UNC32-K00270_0073_BHN3NFBBXX_ATGTCA_S12_L003_R1_001.fastq.gz 3739953418 FASTQ R1_L003 unaligned CPTAC3 cb8ddc17-af0a-41e7-938b-643b41ff9cda f1ab8b06e4a4b2a0cf0ba47db82a865a { 'aliquot_tag': 'ALQ_f7545f34', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01405.RNA-Seq.R1_L004.T C3N-01405 LUAD RNA-Seq tumor CPT0105330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATGTCA_S13_L004_R1_001.fastq.gz 3826095376 FASTQ R1_L004 unaligned CPTAC3 e7c2e10c-7db1-4d29-a772-5dc6a9198511 f384c94d6db3d691fe71837eca7ee829 { 'aliquot_tag': 'ALQ_75d3c962', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01405.RNA-Seq.R2_L003.A C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 171215_UNC32-K00270_0073_BHN3NFBBXX_ATGTCA_S12_L003_R2_001.fastq.gz 4202411850 FASTQ R2_L003 unaligned CPTAC3 bb48e028-dc28-4d8b-ba9a-42e847f14a7c 61873c93a57247f6803b14fc8be85051 { 'aliquot_tag': 'ALQ_f7545f34', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-01405.RNA-Seq.R2_L004.T C3N-01405 LUAD RNA-Seq tumor CPT0105330006 171109_UNC31-K00269_0090_AHLHNWBBXX_ATGTCA_S13_L004_R2_001.fastq.gz 4180720838 FASTQ R2_L004 unaligned CPTAC3 b23ecd28-c2ba-4842-9c54-36c56b344bff 95821c43c0bc81493509e62705f269fe { 'aliquot_tag': 'ALQ_75d3c962', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-01405.RNA-Seq.transcriptome.A.hg38 C3N-01405 LUAD RNA-Seq tissue_normal CPT0105370007 c28bea06-987d-4681-b564-21b28767d1bd.rna_seq.transcriptome.gdc_realn.bam 12096059717 BAM transcriptome harmonized CPTAC3 6deee440-1e83-42a9-a064-822762fcc3c4 0aebdc258b9c6c6e463efa22c5495466 { 'aliquot_tag': 'ALQ_f7545f34', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01405.RNA-Seq.transcriptome.T.hg38 C3N-01405 LUAD RNA-Seq tumor CPT0105330006 41d5e6f9-b24b-4389-8429-87347832460a.rna_seq.transcriptome.gdc_realn.bam 10550099858 BAM transcriptome harmonized CPTAC3 df0a0412-c8e1-4da7-bad5-243967f1b8bf 775f3211122e7f266f12e9e82b9c6fc1 { 'aliquot_tag': 'ALQ_75d3c962', 'gdc_sample_type': 'Primary Tumor' } C3N-01405.WGS.A C3N-01405 LUAD WGS tissue_normal CPT0105370010 CPT0105370010.WholeGenome.RP-1303.bam 54588810854 BAM aligned CPTAC3 648ce143-c2c1-43b9-b2f3-86b8dd772b0f 05612ff6f8e599b45bc6260325c4468f { 'aliquot_tag': 'ALQ_702bfbd6', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25621,16 +27566,16 @@ C3N-01408.miRNA-Seq.A C3N-01408 LUAD miRNA-Seq tissue_normal CPT0117890006 18110 C3N-01408.miRNA-Seq.A.hg38 C3N-01408 LUAD miRNA-Seq tissue_normal CPT0117890006 d98d7059-fd4f-4999-99f8-fc62d5baf46b_mirnaseq_gdc_realn.bam 318975318 BAM harmonized CPTAC3 18e1e849-f233-4aee-8052-d6768bbbffdb 4eae224308712eccec2fec72665fff86 { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01408.miRNA-Seq.T C3N-01408 LUAD miRNA-Seq tumor CPT0117850006 181119_UNC31-K00269_0165_AH27WCBBXY_ATTCCT_S3_L004_R1_001.unaln.bam 248473029 BAM unaligned CPTAC3 209b0557-74e3-40ef-a2f1-236050615adf c1784be14283ea860345cebdce1e91c9 { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor' } C3N-01408.miRNA-Seq.T.hg38 C3N-01408 LUAD miRNA-Seq tumor CPT0117850006 07a09938-08bc-4725-ac69-24a196263eb1_mirnaseq_gdc_realn.bam 270405992 BAM harmonized CPTAC3 061abdc7-be9d-4cfc-9c3b-b1f5941b3cbb df882b0a48d2eb042c64a83500841750 { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01408.RNA-Seq.chimeric.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 cfea5280-2660-4457-813f-bc3f837dc392.rna_seq.chimeric.gdc_realn.bam 177416131 BAM chimeric harmonized CPTAC3 16cddbed-ba92-46b8-a668-6ee33096cf1e 2c338d5419f7acb71a3b3c190f97f95a { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01408.RNA-Seq.chimeric.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 20641efb-0f78-437e-94fa-5a30e8402fa0.rna_seq.chimeric.gdc_realn.bam 31859467 BAM chimeric harmonized CPTAC3 da296b94-50e9-46fc-b23d-fe01f12debd2 c2aefd90826e49f1b7af9861aa643fba { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01408.RNA-Seq.genomic.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 cfea5280-2660-4457-813f-bc3f837dc392.rna_seq.genomic.gdc_realn.bam 9599682321 BAM genomic harmonized CPTAC3 6f0595c0-69bc-44f8-99f0-ccb4e661b940 10d3f7a96963b146d854ff56b21b4684 { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01408.RNA-Seq.genomic.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 20641efb-0f78-437e-94fa-5a30e8402fa0.rna_seq.genomic.gdc_realn.bam 6084231735 BAM genomic harmonized CPTAC3 e3c56325-550c-4ab8-a701-bd736cecc236 c80550183eb26a0b8991fc329a87afb2 { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01408.RNA-Seq.R1_L002.T C3N-01408 LUAD RNA-Seq tumor CPT0117850006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L002_R1_001.fastq.gz 2728475741 FASTQ R1_L002 unaligned CPTAC3 f0b0aa2f-6e3c-45b0-a788-c2a4328e4f37 6cf74ac1e9de0206ddb7be9c8ac0fc95 { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01408.RNA-Seq.R1_L008.A C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L008_R1_001.fastq.gz 4645716880 FASTQ R1_L008 unaligned CPTAC3 8107b741-856d-4059-8828-25dd1e390023 39e9edcb2a7f0de15579d650f700bb7d { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01408.RNA-Seq.R2_L002.T C3N-01408 LUAD RNA-Seq tumor CPT0117850006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L002_R2_001.fastq.gz 3044850834 FASTQ R2_L002 unaligned CPTAC3 d276bb1c-9658-44dc-b7d2-2574c633cd26 47afc2e418718f297d0d16bd5c2dd46c { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01408.RNA-Seq.R2_L008.A C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L008_R2_001.fastq.gz 4496241140 FASTQ R2_L008 unaligned CPTAC3 f8af9707-18ab-4e41-8b15-71ab514b1e74 5276b217e6f4ac77d948c68b3599d1c6 { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01408.RNA-Seq.transcriptome.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 cfea5280-2660-4457-813f-bc3f837dc392.rna_seq.transcriptome.gdc_realn.bam 9103622417 BAM transcriptome harmonized CPTAC3 ed65d53b-24e3-4bc3-93ad-1012ce83f56b ae9280c6758e2b03c6403124ca14f152 { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01408.RNA-Seq.transcriptome.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 20641efb-0f78-437e-94fa-5a30e8402fa0.rna_seq.transcriptome.gdc_realn.bam 8113867835 BAM transcriptome harmonized CPTAC3 b98eac19-5b31-4f5a-9909-18b2061cb69c 8dba2a57dd849928f18e9cf5e5a463ec { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor' } +C3N-01408.RNA-Seq.chimeric.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 557c4895-d5f3-4005-abcd-84dafb75f992.rna_seq.chimeric.gdc_realn.bam 177375574 BAM chimeric harmonized CPTAC3 6dd754d5-e600-4f33-8a7f-7e54bccc5c75 c99fa0b9c6b96a05d172b9288edd5890 { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01408.RNA-Seq.chimeric.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 1c4134e9-1bd6-455f-afa7-98a5d0d501c4.rna_seq.chimeric.gdc_realn.bam 31854731 BAM chimeric harmonized CPTAC3 6a2c4746-4449-4e4c-b1e7-28b31ca5458b 6d521c5eda5c8ef585ceef09c75ecb4f { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor' } +C3N-01408.RNA-Seq.genomic.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 557c4895-d5f3-4005-abcd-84dafb75f992.rna_seq.genomic.gdc_realn.bam 9600920528 BAM genomic harmonized CPTAC3 33867133-6648-41da-a564-904453d900e9 48c9de60f7390fa4e5fccf9d4b51b7a8 { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01408.RNA-Seq.genomic.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 1c4134e9-1bd6-455f-afa7-98a5d0d501c4.rna_seq.genomic.gdc_realn.bam 6084510564 BAM genomic harmonized CPTAC3 be5ea5ae-569e-4838-b51d-e1baabc18abc e4adc9590906b68f43e16ac6f0f6780c { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor' } +C3N-01408.RNA-Seq.R1_L002.T C3N-01408 LUAD RNA-Seq tumor CPT0117850006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L002_R1_001.fastq.gz 2728475741 FASTQ R1_L002 unaligned CPTAC3 f0b0aa2f-6e3c-45b0-a788-c2a4328e4f37 6cf74ac1e9de0206ddb7be9c8ac0fc95 { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01408.RNA-Seq.R1_L008.A C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L008_R1_001.fastq.gz 4645716880 FASTQ R1_L008 unaligned CPTAC3 8107b741-856d-4059-8828-25dd1e390023 39e9edcb2a7f0de15579d650f700bb7d { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01408.RNA-Seq.R2_L002.T C3N-01408 LUAD RNA-Seq tumor CPT0117850006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L002_R2_001.fastq.gz 3044850834 FASTQ R2_L002 unaligned CPTAC3 d276bb1c-9658-44dc-b7d2-2574c633cd26 47afc2e418718f297d0d16bd5c2dd46c { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01408.RNA-Seq.R2_L008.A C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATCACG_S8_L008_R2_001.fastq.gz 4496241140 FASTQ R2_L008 unaligned CPTAC3 f8af9707-18ab-4e41-8b15-71ab514b1e74 5276b217e6f4ac77d948c68b3599d1c6 { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-01408.RNA-Seq.transcriptome.A.hg38 C3N-01408 LUAD RNA-Seq tissue_normal CPT0117890006 557c4895-d5f3-4005-abcd-84dafb75f992.rna_seq.transcriptome.gdc_realn.bam 10296366564 BAM transcriptome harmonized CPTAC3 1a682487-549f-4e0d-a75a-e8b581154961 7d6d425ae1029d726d9077f7f0283249 { 'aliquot_tag': 'ALQ_e9130b7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01408.RNA-Seq.transcriptome.T.hg38 C3N-01408 LUAD RNA-Seq tumor CPT0117850006 1c4134e9-1bd6-455f-afa7-98a5d0d501c4.rna_seq.transcriptome.gdc_realn.bam 9269776158 BAM transcriptome harmonized CPTAC3 6a92e0bb-72dc-4689-b724-50397c0d400b 468b74b788049e9a9007195fba9b683a { 'aliquot_tag': 'ALQ_cb61ddb6', 'gdc_sample_type': 'Primary Tumor' } C3N-01408.WGS.A C3N-01408 LUAD WGS tissue_normal CPT0117890009 CPT0117890009.WholeGenome.RP-1303.bam 55958599081 BAM aligned CPTAC3 9f88d34c-e046-4c1c-87d6-1fdff62d2a8a c1f1ecfe81bfc6bfd476ffa227febed4 { 'aliquot_tag': 'ALQ_9e2e2d26', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01408.WGS.A.hg38 C3N-01408 LUAD WGS tissue_normal CPT0117890009 bc6438c3-4305-42a7-99df-28c9ee5fc5d3_wgs_gdc_realn.bam 82840668389 BAM harmonized CPTAC3 48fb83a3-8035-4068-b926-b45f5d82dcdb 91863467130e035ad38884993d7fa544 { 'aliquot_tag': 'ALQ_9e2e2d26', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01408.WGS.N C3N-01408 LUAD WGS blood_normal CPT0119090002 CPT0119090002.WholeGenome.RP-1303.bam 60247309715 BAM aligned CPTAC3 6b5503d6-619a-4cec-8522-0ddb48f447c8 72c3f41681ad513762468abe9ca764b6 { 'aliquot_tag': 'ALQ_b5900d9e', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25651,16 +27596,16 @@ C3N-01409.miRNA-Seq.A C3N-01409 LUAD miRNA-Seq tissue_normal CPT0117940006 18110 C3N-01409.miRNA-Seq.A.hg38 C3N-01409 LUAD miRNA-Seq tissue_normal CPT0117940006 5f464963-879b-4f5f-b78a-91dfbbef77a7_mirnaseq_gdc_realn.bam 296928438 BAM harmonized CPTAC3 659ae50e-efe1-4200-96e2-9fc187a7c258 ccdcaf0bc9a25c15091c65cb4fade2b9 { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01409.miRNA-Seq.T C3N-01409 LUAD miRNA-Seq tumor CPT0117930006 181119_UNC31-K00269_0165_AH27WCBBXY_CAAAAG_S4_L004_R1_001.unaln.bam 277433353 BAM unaligned CPTAC3 62df8258-d2d2-45f0-90ea-73ffb48ca136 9bd981e3cee26f29650868d7a2bda402 { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor' } C3N-01409.miRNA-Seq.T.hg38 C3N-01409 LUAD miRNA-Seq tumor CPT0117930006 04519836-2639-4805-8251-f10cc4eeb462_mirnaseq_gdc_realn.bam 297860553 BAM harmonized CPTAC3 678cab8c-5db5-4788-bc4c-12672c2652e0 d6fa8a3cdfccbea8215bb9d2d83bc9c8 { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01409.RNA-Seq.chimeric.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 1edc0ff1-e0d7-4527-8c6d-676b9e4bdbf7.rna_seq.chimeric.gdc_realn.bam 134129819 BAM chimeric harmonized CPTAC3 0ba7b5ac-a8c0-4088-89f6-b09172600f39 59513a77a83a6371f97ae7675cdb74bd { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01409.RNA-Seq.chimeric.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 b5142da6-f1ca-472f-9828-81611d16dc34.rna_seq.chimeric.gdc_realn.bam 178189180 BAM chimeric harmonized CPTAC3 4b35f911-a855-440f-b07b-4e8102b3df2d 33775a8594a22a2040a87a40449115bc { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01409.RNA-Seq.genomic.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 1edc0ff1-e0d7-4527-8c6d-676b9e4bdbf7.rna_seq.genomic.gdc_realn.bam 9185515279 BAM genomic harmonized CPTAC3 d3098c8c-de07-47a4-8c18-ca7c5da3d516 e6f001f450c4bcc61bef767638fb7800 { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01409.RNA-Seq.genomic.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 b5142da6-f1ca-472f-9828-81611d16dc34.rna_seq.genomic.gdc_realn.bam 10630374757 BAM genomic harmonized CPTAC3 3f15825b-1661-43a0-a902-1cb05bc25543 2fe3ce9f98193bce97f11509664b989f { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01409.RNA-Seq.R1_L002.T C3N-01409 LUAD RNA-Seq tumor CPT0117930006 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L002_R1_001.fastq.gz 4788455456 FASTQ R1_L002 unaligned CPTAC3 05c1b6aa-d224-4fc3-acfb-961bcaa7de92 7004fb87e98d00e14e2d073dd09a9a70 { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01409.RNA-Seq.R1_L008.A C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L008_R1_001.fastq.gz 4279477648 FASTQ R1_L008 unaligned CPTAC3 7d9f260e-66c4-4814-b0ee-9a56a6cc04ef 6246df63fbf8e997ea0dfd941db08a64 { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01409.RNA-Seq.R2_L002.T C3N-01409 LUAD RNA-Seq tumor CPT0117930006 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L002_R2_001.fastq.gz 5417194501 FASTQ R2_L002 unaligned CPTAC3 fcec88ed-9ac7-4209-8a47-c2ee075b0f8e 31a7d77298fda3c0776e145f44912bf9 { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01409.RNA-Seq.R2_L008.A C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L008_R2_001.fastq.gz 4663858183 FASTQ R2_L008 unaligned CPTAC3 94f92a10-1308-4460-89ec-2981c175823d 3890ef3d12b00e59f8242b0c95ecca81 { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01409.RNA-Seq.transcriptome.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 1edc0ff1-e0d7-4527-8c6d-676b9e4bdbf7.rna_seq.transcriptome.gdc_realn.bam 9710216582 BAM transcriptome harmonized CPTAC3 23f6112f-fbf3-4291-ba29-963a7a3455db 3f8623c3d30dcc863a3969ca028c1939 { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01409.RNA-Seq.transcriptome.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 b5142da6-f1ca-472f-9828-81611d16dc34.rna_seq.transcriptome.gdc_realn.bam 10425749095 BAM transcriptome harmonized CPTAC3 4529796c-a7d6-49cb-846c-c201fb462267 48cebba64ccc6f5ace5f7ece263b45b5 { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01409.RNA-Seq.chimeric.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 b52b8324-2c05-4cd0-8838-840c52cebff4.rna_seq.chimeric.gdc_realn.bam 134090538 BAM chimeric harmonized CPTAC3 260a326d-aabe-4822-b751-f8645a8061b5 bd10d53a4d1b5dfd7e1ec30023ad3341 { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01409.RNA-Seq.chimeric.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 24eb973a-961c-4d12-a3f5-3ac7d841780b.rna_seq.chimeric.gdc_realn.bam 178174780 BAM chimeric harmonized CPTAC3 560cdeb2-eb54-4524-bc4e-b2838bf70294 e10760be4568d3c455c30471c72020ce { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01409.RNA-Seq.genomic.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 b52b8324-2c05-4cd0-8838-840c52cebff4.rna_seq.genomic.gdc_realn.bam 9186614699 BAM genomic harmonized CPTAC3 45fded74-7db9-4ced-a7f1-9aea40008882 d5cb712bb880c8a7d14e7fcd81db73f3 { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01409.RNA-Seq.genomic.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 24eb973a-961c-4d12-a3f5-3ac7d841780b.rna_seq.genomic.gdc_realn.bam 10631611298 BAM genomic harmonized CPTAC3 230f852c-561b-4d18-866c-0659741c5d90 2ba6aefc5b134f26a7ea04d14bbe35dc { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01409.RNA-Seq.R1_L002.T C3N-01409 LUAD RNA-Seq tumor CPT0117930006 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L002_R1_001.fastq.gz 4788455456 FASTQ R1_L002 unaligned CPTAC3 05c1b6aa-d224-4fc3-acfb-961bcaa7de92 7004fb87e98d00e14e2d073dd09a9a70 { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01409.RNA-Seq.R1_L008.A C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L008_R1_001.fastq.gz 4279477648 FASTQ R1_L008 unaligned CPTAC3 7d9f260e-66c4-4814-b0ee-9a56a6cc04ef 6246df63fbf8e997ea0dfd941db08a64 { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01409.RNA-Seq.R2_L002.T C3N-01409 LUAD RNA-Seq tumor CPT0117930006 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L002_R2_001.fastq.gz 5417194501 FASTQ R2_L002 unaligned CPTAC3 fcec88ed-9ac7-4209-8a47-c2ee075b0f8e 31a7d77298fda3c0776e145f44912bf9 { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01409.RNA-Seq.R2_L008.A C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGATGT_S10_L008_R2_001.fastq.gz 4663858183 FASTQ R2_L008 unaligned CPTAC3 94f92a10-1308-4460-89ec-2981c175823d 3890ef3d12b00e59f8242b0c95ecca81 { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-01409.RNA-Seq.transcriptome.A.hg38 C3N-01409 LUAD RNA-Seq tissue_normal CPT0117940006 b52b8324-2c05-4cd0-8838-840c52cebff4.rna_seq.transcriptome.gdc_realn.bam 11010740004 BAM transcriptome harmonized CPTAC3 902a90e6-ce5a-449f-a9ac-d71bff7756ba 5d4ff25f10101d61cd190b3bb4976c30 { 'aliquot_tag': 'ALQ_3d5d27a3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01409.RNA-Seq.transcriptome.T.hg38 C3N-01409 LUAD RNA-Seq tumor CPT0117930006 24eb973a-961c-4d12-a3f5-3ac7d841780b.rna_seq.transcriptome.gdc_realn.bam 11984444742 BAM transcriptome harmonized CPTAC3 0b007f76-7a99-457e-b36f-6c6d13d704d3 bb3292df659d8ea77d8c6f9d08f44605 { 'aliquot_tag': 'ALQ_8f7dfbb3', 'gdc_sample_type': 'Primary Tumor' } C3N-01409.WGS.A C3N-01409 LUAD WGS tissue_normal CPT0117940009 CPT0117940009.WholeGenome.RP-1303.bam 57403276235 BAM aligned CPTAC3 20caca76-69f9-448a-bc42-27007b5d3182 37cf66182ac9a317502cf3f9d7be2e0d { 'aliquot_tag': 'ALQ_ade23a32', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01409.WGS.A.hg38 C3N-01409 LUAD WGS tissue_normal CPT0117940009 9cb78bb5-67c4-440e-af60-c9670e654b32_wgs_gdc_realn.bam 83292092206 BAM harmonized CPTAC3 73be6fe1-11f1-47d7-86d9-b257fe81083e 3080c48764035d1d88512a1cb623bd68 { 'aliquot_tag': 'ALQ_ade23a32', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01409.WGS.N C3N-01409 LUAD WGS blood_normal CPT0119150002 CPT0119150002.WholeGenome.RP-1303.bam 81097794648 BAM aligned CPTAC3 23af0ece-6f9e-4231-bf7d-a12654283136 fa64adca84c0fa6e28eb1d645b2414df { 'aliquot_tag': 'ALQ_bb3c333a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25683,12 +27628,12 @@ C3N-01410.miRNA-Seq.T C3N-01410 LUAD miRNA-Seq tumor CPT0117970006 181119_UNC31- C3N-01410.miRNA-Seq.T.hg38 C3N-01410 LUAD miRNA-Seq tumor CPT0117970006 41ca1f33-edb1-4bfc-8b82-93e061046f03_mirnaseq_gdc_realn.bam 246710985 BAM harmonized CPTAC3 b1ed6e4b-3535-4a89-94a2-69605b3b0140 053f72e7c0784c5eae3ba1c5e7727c13 { 'aliquot_tag': 'ALQ_7afd5d73', 'gdc_sample_type': 'Primary Tumor' } C3N-01410.RNA-Seq.chimeric.A.hg38 C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 282d11b9-0ea8-4f79-80ec-fa75a1292688.rna_seq.chimeric.gdc_realn.bam 118138447 BAM chimeric harmonized CPTAC3 3b0c4b1f-3f7a-49c1-aeee-fd95bfd5ac2a 1d732555273a9af9321b24436b0c62ef { 'aliquot_tag': 'ALQ_24fa89f2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01410.RNA-Seq.chimeric.T.hg38 C3N-01410 LUAD RNA-Seq tumor CPT0117970006 d9ca4882-fcc4-4f75-a5bc-3616346e1787.rna_seq.chimeric.gdc_realn.bam 151201218 BAM chimeric harmonized CPTAC3 7f77e27f-3b0a-4ac8-bbc0-9a61ce752a36 dcb31f86b2ced62b7b74aa01d0e26f6b { 'aliquot_tag': 'ALQ_7afd5d73', 'gdc_sample_type': 'Primary Tumor' } -C3N-01410.RNA-Seq.genomic.A.hg38 C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 282d11b9-0ea8-4f79-80ec-fa75a1292688.rna_seq.genomic.gdc_realn.bam 9015401653 BAM genomic harmonized CPTAC3 74b57fa0-85d6-4bec-a89b-805db4037503 402ff0aa38be754e91b3ddb12fe16f81 { 'aliquot_tag': 'ALQ_24fa89f2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01410.RNA-Seq.genomic.T.hg38 C3N-01410 LUAD RNA-Seq tumor CPT0117970006 d9ca4882-fcc4-4f75-a5bc-3616346e1787.rna_seq.genomic.gdc_realn.bam 9724920067 BAM genomic harmonized CPTAC3 49a1e378-e995-42f0-aea7-e08a2a46d394 a9670c3556ee6f06752df7cdb454fc33 { 'aliquot_tag': 'ALQ_7afd5d73', 'gdc_sample_type': 'Primary Tumor' } -C3N-01410.RNA-Seq.R1_L002.T C3N-01410 LUAD RNA-Seq tumor CPT0117970006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L002_R1_001.fastq.gz 4197600930 FASTQ R1_L002 unaligned CPTAC3 eb212621-bbd4-41cc-8389-aba6dd151656 6c385b68d3c0ffb2de237eef999eac02 { 'aliquot_tag': 'ALQ_7afd5d73', 'gdc_sample_type': 'Primary Tumor' } -C3N-01410.RNA-Seq.R1_L008.A C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L008_R1_001.fastq.gz 4020894248 FASTQ R1_L008 unaligned CPTAC3 2a7ea7e5-8bdb-42a1-92de-1e834613408a a7f68efe807c7d31e43922774ff9ad1c { 'aliquot_tag': 'ALQ_24fa89f2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01410.RNA-Seq.R2_L002.T C3N-01410 LUAD RNA-Seq tumor CPT0117970006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L002_R2_001.fastq.gz 4770984392 FASTQ R2_L002 unaligned CPTAC3 6dc7354b-a711-4a5d-9e31-39c70884d08c 4905bd85002bc8da627f82c4d72c3f66 { 'aliquot_tag': 'ALQ_7afd5d73', 'gdc_sample_type': 'Primary Tumor' } -C3N-01410.RNA-Seq.R2_L008.A C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L008_R2_001.fastq.gz 4411991827 FASTQ R2_L008 unaligned CPTAC3 f52226c8-d695-404d-b2aa-d62d5ababc57 7a174abb9a4c87a4f4fcd1b69d9374ef { 'aliquot_tag': 'ALQ_24fa89f2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01410.RNA-Seq.genomic.A.hg38 C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 282d11b9-0ea8-4f79-80ec-fa75a1292688.rna_seq.genomic.gdc_realn.bam 9015401653 BAM genomic harmonized CPTAC3 7ec6a072-a58b-4fac-b7aa-b107460020d6 402ff0aa38be754e91b3ddb12fe16f81 { 'aliquot_tag': 'ALQ_24fa89f2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01410.RNA-Seq.genomic.T.hg38 C3N-01410 LUAD RNA-Seq tumor CPT0117970006 d9ca4882-fcc4-4f75-a5bc-3616346e1787.rna_seq.genomic.gdc_realn.bam 9724920067 BAM genomic harmonized CPTAC3 e57d640f-ca77-4526-b50a-5b5fe3b16869 a9670c3556ee6f06752df7cdb454fc33 { 'aliquot_tag': 'ALQ_7afd5d73', 'gdc_sample_type': 'Primary Tumor' } +C3N-01410.RNA-Seq.R1_L002.T C3N-01410 LUAD RNA-Seq tumor CPT0117970006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L002_R1_001.fastq.gz 4197600930 FASTQ R1_L002 unaligned CPTAC3 eb212621-bbd4-41cc-8389-aba6dd151656 6c385b68d3c0ffb2de237eef999eac02 { 'aliquot_tag': 'ALQ_7afd5d73', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01410.RNA-Seq.R1_L008.A C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L008_R1_001.fastq.gz 4020894248 FASTQ R1_L008 unaligned CPTAC3 2a7ea7e5-8bdb-42a1-92de-1e834613408a a7f68efe807c7d31e43922774ff9ad1c { 'aliquot_tag': 'ALQ_24fa89f2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01410.RNA-Seq.R2_L002.T C3N-01410 LUAD RNA-Seq tumor CPT0117970006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L002_R2_001.fastq.gz 4770984392 FASTQ R2_L002 unaligned CPTAC3 6dc7354b-a711-4a5d-9e31-39c70884d08c 4905bd85002bc8da627f82c4d72c3f66 { 'aliquot_tag': 'ALQ_7afd5d73', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01410.RNA-Seq.R2_L008.A C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 180109_UNC31-K00269_0107_AHNHY2BBXX_TTAGGC_S5_L008_R2_001.fastq.gz 4411991827 FASTQ R2_L008 unaligned CPTAC3 f52226c8-d695-404d-b2aa-d62d5ababc57 7a174abb9a4c87a4f4fcd1b69d9374ef { 'aliquot_tag': 'ALQ_24fa89f2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-01410.RNA-Seq.transcriptome.A.hg38 C3N-01410 LUAD RNA-Seq tissue_normal CPT0118010006 282d11b9-0ea8-4f79-80ec-fa75a1292688.rna_seq.transcriptome.gdc_realn.bam 10074605915 BAM transcriptome harmonized CPTAC3 67ed592b-1105-4786-8dcf-1f53a24e84b2 d71c22974d9ead5d23956f4d017a98d0 { 'aliquot_tag': 'ALQ_24fa89f2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01410.RNA-Seq.transcriptome.T.hg38 C3N-01410 LUAD RNA-Seq tumor CPT0117970006 d9ca4882-fcc4-4f75-a5bc-3616346e1787.rna_seq.transcriptome.gdc_realn.bam 11215562495 BAM transcriptome harmonized CPTAC3 ac6684b0-1336-4a13-bec7-5297f11f9079 0b905eeb8bb6cda395f42acca11ec413 { 'aliquot_tag': 'ALQ_7afd5d73', 'gdc_sample_type': 'Primary Tumor' } C3N-01410.WGS.A C3N-01410 LUAD WGS tissue_normal CPT0118010009 CPT0118010009.WholeGenome.RP-1303.bam 52509271683 BAM aligned CPTAC3 40944398-53c6-484b-8f32-5ec434988e5f a27d0acc8ac8fba507cfdc63f3bc7850 { 'aliquot_tag': 'ALQ_b4459463', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25713,12 +27658,12 @@ C3N-01411.miRNA-Seq.T C3N-01411 LSCC miRNA-Seq tumor CPT0105420006 181113_UNC31- C3N-01411.miRNA-Seq.T.hg38 C3N-01411 LSCC miRNA-Seq tumor CPT0105420006 dc70c1da-2f30-4d35-827c-745ffb327cce_mirnaseq_gdc_realn.bam 283268551 BAM harmonized CPTAC3 9dff38ac-51dc-4142-be11-870ce19de67c c94fe3bbc78b082965743bed539e89ca { 'aliquot_tag': 'ALQ_55b6d06a', 'gdc_sample_type': 'Primary Tumor' } C3N-01411.RNA-Seq.chimeric.A.hg38 C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 e5f0b844-4556-4190-a90a-1d296818ce16.rna_seq.chimeric.gdc_realn.bam 45410438 BAM chimeric harmonized CPTAC3 7d00f9bc-3ccf-4411-9ba3-8b92d2b89ec3 d520d3a8776b31e1b12f6785539e6b4d { 'aliquot_tag': 'ALQ_f869e44b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01411.RNA-Seq.chimeric.T.hg38 C3N-01411 LSCC RNA-Seq tumor CPT0105420006 61519f53-0ee1-4342-aa55-6a7e80a4d698.rna_seq.chimeric.gdc_realn.bam 31702140 BAM chimeric harmonized CPTAC3 a76b8838-e1a4-4036-b228-9501988679fa 5ca8789dfc2d8c1b4dedec3995bda69f { 'aliquot_tag': 'ALQ_55b6d06a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01411.RNA-Seq.genomic.A.hg38 C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 e5f0b844-4556-4190-a90a-1d296818ce16.rna_seq.genomic.gdc_realn.bam 9104616704 BAM genomic harmonized CPTAC3 ecd87ba0-8fad-4bb1-9666-1a11382379d5 fc580132fc818814c41599ef7b60191b { 'aliquot_tag': 'ALQ_f869e44b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01411.RNA-Seq.genomic.T.hg38 C3N-01411 LSCC RNA-Seq tumor CPT0105420006 61519f53-0ee1-4342-aa55-6a7e80a4d698.rna_seq.genomic.gdc_realn.bam 7784753459 BAM genomic harmonized CPTAC3 b1a94a18-8249-4298-acbf-bc2b7c4968e3 748c61a941fe119fe919bb9b53cd3d1a { 'aliquot_tag': 'ALQ_55b6d06a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01411.RNA-Seq.R1_L001.A C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3968728740 FASTQ R1_L001 unaligned CPTAC3 8e181985-87cf-4b03-b1a6-7d2085de9f2d 4d36e29124f811ce70684e4df4ac260a { 'aliquot_tag': 'ALQ_f869e44b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01411.RNA-Seq.R1_L004.T C3N-01411 LSCC RNA-Seq tumor CPT0105420006 171109_UNC31-K00269_0090_AHLHNWBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 3778238256 FASTQ R1_L004 unaligned CPTAC3 e87055d9-f513-4b8a-b7d2-41429c116627 84821ea16a60c941422284fe27dd65d6 { 'aliquot_tag': 'ALQ_55b6d06a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01411.RNA-Seq.R2_L001.A C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4219877915 FASTQ R2_L001 unaligned CPTAC3 feb66235-feef-4091-903c-8af81d459d17 62f8023c97c08ac13848eeb6b1b98fb6 { 'aliquot_tag': 'ALQ_f869e44b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01411.RNA-Seq.R2_L004.T C3N-01411 LSCC RNA-Seq tumor CPT0105420006 171109_UNC31-K00269_0090_AHLHNWBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 3959497381 FASTQ R2_L004 unaligned CPTAC3 4a4c8e39-00b2-4a7f-987c-73eb1561e681 bdb2fbd340069685527f48a8c5b1198d { 'aliquot_tag': 'ALQ_55b6d06a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01411.RNA-Seq.genomic.A.hg38 C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 e5f0b844-4556-4190-a90a-1d296818ce16.rna_seq.genomic.gdc_realn.bam 9104616704 BAM genomic harmonized CPTAC3 fb910558-0551-4b4a-ae9e-7028ad203c6d fc580132fc818814c41599ef7b60191b { 'aliquot_tag': 'ALQ_f869e44b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01411.RNA-Seq.genomic.T.hg38 C3N-01411 LSCC RNA-Seq tumor CPT0105420006 61519f53-0ee1-4342-aa55-6a7e80a4d698.rna_seq.genomic.gdc_realn.bam 7784753459 BAM genomic harmonized CPTAC3 73207794-3715-4a23-81cd-de7409271d3a 748c61a941fe119fe919bb9b53cd3d1a { 'aliquot_tag': 'ALQ_55b6d06a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01411.RNA-Seq.R1_L001.A C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3968728740 FASTQ R1_L001 unaligned CPTAC3 8e181985-87cf-4b03-b1a6-7d2085de9f2d 4d36e29124f811ce70684e4df4ac260a { 'aliquot_tag': 'ALQ_f869e44b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01411.RNA-Seq.R1_L004.T C3N-01411 LSCC RNA-Seq tumor CPT0105420006 171109_UNC31-K00269_0090_AHLHNWBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 3778238256 FASTQ R1_L004 unaligned CPTAC3 e87055d9-f513-4b8a-b7d2-41429c116627 84821ea16a60c941422284fe27dd65d6 { 'aliquot_tag': 'ALQ_55b6d06a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01411.RNA-Seq.R2_L001.A C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 180516_UNC32-K00270_0095_AHTY5LBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4219877915 FASTQ R2_L001 unaligned CPTAC3 feb66235-feef-4091-903c-8af81d459d17 62f8023c97c08ac13848eeb6b1b98fb6 { 'aliquot_tag': 'ALQ_f869e44b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01411.RNA-Seq.R2_L004.T C3N-01411 LSCC RNA-Seq tumor CPT0105420006 171109_UNC31-K00269_0090_AHLHNWBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 3959497381 FASTQ R2_L004 unaligned CPTAC3 4a4c8e39-00b2-4a7f-987c-73eb1561e681 bdb2fbd340069685527f48a8c5b1198d { 'aliquot_tag': 'ALQ_55b6d06a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-01411.RNA-Seq.transcriptome.A.hg38 C3N-01411 LSCC RNA-Seq tissue_normal CPT0105430009 e5f0b844-4556-4190-a90a-1d296818ce16.rna_seq.transcriptome.gdc_realn.bam 10490174536 BAM transcriptome harmonized CPTAC3 ce74b90e-9eea-4110-b5c8-1176b37c7ff8 7d40c27e2d2c69da9d57c933af23ead0 { 'aliquot_tag': 'ALQ_f869e44b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01411.RNA-Seq.transcriptome.T.hg38 C3N-01411 LSCC RNA-Seq tumor CPT0105420006 61519f53-0ee1-4342-aa55-6a7e80a4d698.rna_seq.transcriptome.gdc_realn.bam 10525231278 BAM transcriptome harmonized CPTAC3 36471100-dc47-48c5-830f-361bd7a6152d 8159e0c1d489cae9f0bb77c3cee709ff { 'aliquot_tag': 'ALQ_55b6d06a', 'gdc_sample_type': 'Primary Tumor' } C3N-01411.WGS.A C3N-01411 LSCC WGS tissue_normal CPT0105430006 CPT0105430006.WholeGenome.RP-1303.bam 65053536402 BAM aligned CPTAC3 cdbf7e51-bd95-4c0b-8587-0528401eadec 7b2888b1907082e3e984267ed4ac53ff { 'aliquot_tag': 'ALQ_68d6f9da', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25744,11 +27689,11 @@ C3N-01413.miRNA-Seq.T.hg38 C3N-01413 LUAD miRNA-Seq tumor CPT0105510006 2e3872ad C3N-01413.RNA-Seq.chimeric.A.hg38 C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 446a18ed-f18f-4b30-aee1-913ad1af8fce.rna_seq.chimeric.gdc_realn.bam 118932415 BAM chimeric harmonized CPTAC3 56156127-e6e1-4619-a551-2c0f48f75af1 916772f80e7c54b83ac864ae0b1d944b { 'aliquot_tag': 'ALQ_2ccadfdf', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01413.RNA-Seq.chimeric.T.hg38 C3N-01413 LUAD RNA-Seq tumor CPT0105510006 b64cfe7e-b83f-45f5-9d9c-f0603d7db284.rna_seq.chimeric.gdc_realn.bam 98151343 BAM chimeric harmonized CPTAC3 79ce149e-5a8f-42f3-81bd-020ec55dacdd 576d9c6335b558215fdad0cf12c2c2a0 { 'aliquot_tag': 'ALQ_d94a791f', 'gdc_sample_type': 'Primary Tumor' } C3N-01413.RNA-Seq.genomic.A.hg38 C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 446a18ed-f18f-4b30-aee1-913ad1af8fce.rna_seq.genomic.gdc_realn.bam 9053380162 BAM genomic harmonized CPTAC3 80bb0338-8a6d-4625-89ba-18930aa459bf 7744f119a039500bd84ece7ef3e30fd4 { 'aliquot_tag': 'ALQ_2ccadfdf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01413.RNA-Seq.genomic.T.hg38 C3N-01413 LUAD RNA-Seq tumor CPT0105510006 b64cfe7e-b83f-45f5-9d9c-f0603d7db284.rna_seq.genomic.gdc_realn.bam 9623723387 BAM genomic harmonized CPTAC3 15aa8273-5083-44f3-800f-0fb67b514ea6 20c6bfa4d063614701ba05e20d1f0108 { 'aliquot_tag': 'ALQ_d94a791f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01413.RNA-Seq.R1_L008.A C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L008_R1_001.fastq.gz 4250845951 FASTQ R1_L008 unaligned CPTAC3 37d30592-4988-40c0-8b64-5315ded6231b 2d422e0fb1fe70be6252712d3bf66bd0 { 'aliquot_tag': 'ALQ_2ccadfdf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01413.RNA-Seq.R1_L008.T C3N-01413 LUAD RNA-Seq tumor CPT0105510006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L008_R1_001.fastq.gz 3588963934 FASTQ R1_L008 unaligned CPTAC3 3723de36-3389-49b0-b042-561986d50f17 5b5de8427f5109a5ae2cdeb551f46910 { 'aliquot_tag': 'ALQ_d94a791f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01413.RNA-Seq.R2_L008.A C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L008_R2_001.fastq.gz 4571261299 FASTQ R2_L008 unaligned CPTAC3 9c583061-c1f4-4125-a325-44a7cb7cce44 d2be896dfd9b9c757a3ef7b4e81f823b { 'aliquot_tag': 'ALQ_2ccadfdf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01413.RNA-Seq.R2_L008.T C3N-01413 LUAD RNA-Seq tumor CPT0105510006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L008_R2_001.fastq.gz 4041076318 FASTQ R2_L008 unaligned CPTAC3 b3cc7d24-4260-42e5-b682-278743c2ac79 40269d555048612a654bc2bd8ac8c3da { 'aliquot_tag': 'ALQ_d94a791f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01413.RNA-Seq.genomic.T.hg38 C3N-01413 LUAD RNA-Seq tumor CPT0105510006 b64cfe7e-b83f-45f5-9d9c-f0603d7db284.rna_seq.genomic.gdc_realn.bam 9623723387 BAM genomic harmonized CPTAC3 8023c1ce-a000-4a75-a325-947b7fbe1fa0 20c6bfa4d063614701ba05e20d1f0108 { 'aliquot_tag': 'ALQ_d94a791f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01413.RNA-Seq.R1_L008.A C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L008_R1_001.fastq.gz 4250845951 FASTQ R1_L008 unaligned CPTAC3 37d30592-4988-40c0-8b64-5315ded6231b 2d422e0fb1fe70be6252712d3bf66bd0 { 'aliquot_tag': 'ALQ_2ccadfdf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01413.RNA-Seq.R1_L008.T C3N-01413 LUAD RNA-Seq tumor CPT0105510006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L008_R1_001.fastq.gz 3588963934 FASTQ R1_L008 unaligned CPTAC3 3723de36-3389-49b0-b042-561986d50f17 5b5de8427f5109a5ae2cdeb551f46910 { 'aliquot_tag': 'ALQ_d94a791f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01413.RNA-Seq.R2_L008.A C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 180109_UNC31-K00269_0107_AHNHY2BBXX_TGACCA_S6_L008_R2_001.fastq.gz 4571261299 FASTQ R2_L008 unaligned CPTAC3 9c583061-c1f4-4125-a325-44a7cb7cce44 d2be896dfd9b9c757a3ef7b4e81f823b { 'aliquot_tag': 'ALQ_2ccadfdf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-01413.RNA-Seq.R2_L008.T C3N-01413 LUAD RNA-Seq tumor CPT0105510006 171109_UNC31-K00269_0091_BHMFGTBBXX_CAGATC_S7_L008_R2_001.fastq.gz 4041076318 FASTQ R2_L008 unaligned CPTAC3 b3cc7d24-4260-42e5-b682-278743c2ac79 40269d555048612a654bc2bd8ac8c3da { 'aliquot_tag': 'ALQ_d94a791f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01413.RNA-Seq.transcriptome.A.hg38 C3N-01413 LUAD RNA-Seq tissue_normal CPT0105550006 446a18ed-f18f-4b30-aee1-913ad1af8fce.rna_seq.transcriptome.gdc_realn.bam 11204467017 BAM transcriptome harmonized CPTAC3 e67de3f9-5938-48a3-9b97-a22f14af10ac ca8c198f6ac15f81bb11648e2138d0b9 { 'aliquot_tag': 'ALQ_2ccadfdf', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01413.RNA-Seq.transcriptome.T.hg38 C3N-01413 LUAD RNA-Seq tumor CPT0105510006 b64cfe7e-b83f-45f5-9d9c-f0603d7db284.rna_seq.transcriptome.gdc_realn.bam 9369682388 BAM transcriptome harmonized CPTAC3 6c0e996e-6b1e-426f-a8de-0c1d61d2bd52 c3b402dc276381ce0d289f5a77b5ae2f { 'aliquot_tag': 'ALQ_d94a791f', 'gdc_sample_type': 'Primary Tumor' } C3N-01413.WGS.A C3N-01413 LUAD WGS tissue_normal CPT0105550009 CPT0105550009.WholeGenome.RP-1303.bam 64968788348 BAM aligned CPTAC3 cf4a2089-91f5-4ccc-a6c7-b225fc26b9cf 9d10cb79f4e1e5d342539b86a5559fce { 'aliquot_tag': 'ALQ_bc75c24e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25774,11 +27719,11 @@ C3N-01414.miRNA-Seq.T.hg38 C3N-01414 LUAD miRNA-Seq tumor CPT0105600006 578d59ed C3N-01414.RNA-Seq.chimeric.A.hg38 C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 4949d3de-d215-4d58-9ce1-b440ae802286.rna_seq.chimeric.gdc_realn.bam 73800504 BAM chimeric harmonized CPTAC3 79a04648-ac89-4ee1-af92-8520ef6c5328 a8db864f4ee532dde9abc5916fdef918 { 'aliquot_tag': 'ALQ_5fde0bb1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01414.RNA-Seq.chimeric.T.hg38 C3N-01414 LUAD RNA-Seq tumor CPT0105600006 67dacd56-e94c-45dc-8b97-92a9a9171109.rna_seq.chimeric.gdc_realn.bam 46477630 BAM chimeric harmonized CPTAC3 a7218c4d-4c52-4359-bdb4-397770fba27d 8a00f8b7e62a805620006f665a854459 { 'aliquot_tag': 'ALQ_62be2201', 'gdc_sample_type': 'Primary Tumor' } C3N-01414.RNA-Seq.genomic.A.hg38 C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 4949d3de-d215-4d58-9ce1-b440ae802286.rna_seq.genomic.gdc_realn.bam 7917711202 BAM genomic harmonized CPTAC3 d9864b3b-11d6-4501-b6a3-eeca18f0a6ac 8d5ea81e14af8dc2f8faaddd5352e339 { 'aliquot_tag': 'ALQ_5fde0bb1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01414.RNA-Seq.genomic.T.hg38 C3N-01414 LUAD RNA-Seq tumor CPT0105600006 67dacd56-e94c-45dc-8b97-92a9a9171109.rna_seq.genomic.gdc_realn.bam 8424685295 BAM genomic harmonized CPTAC3 eb733488-49b5-4fa4-9793-59d854b6a9db 65bc164eeede1a140a381d81c41f36b3 { 'aliquot_tag': 'ALQ_62be2201', 'gdc_sample_type': 'Primary Tumor' } -C3N-01414.RNA-Seq.R1_L006.A C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 180313_UNC32-K00270_0085_BHT2MGBBXX_GAGTGG_S35_L006_R1_001.fastq.gz 3884159206 FASTQ R1_L006 unaligned CPTAC3 bbfffa23-6ba2-4146-b17e-0dac46d39049 8c8342cd9cb5616373a8536b531bda4e { 'aliquot_tag': 'ALQ_5fde0bb1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01414.RNA-Seq.R1_L008.T C3N-01414 LUAD RNA-Seq tumor CPT0105600006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L008_R1_001.fastq.gz 3448561046 FASTQ R1_L008 unaligned CPTAC3 083ddf86-ad21-4447-a896-d39d75fa36b8 d470457981931e872131321588017842 { 'aliquot_tag': 'ALQ_62be2201', 'gdc_sample_type': 'Primary Tumor' } -C3N-01414.RNA-Seq.R2_L006.A C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 180313_UNC32-K00270_0085_BHT2MGBBXX_GAGTGG_S35_L006_R2_001.fastq.gz 4208871781 FASTQ R2_L006 unaligned CPTAC3 d2564ee1-2759-4863-86c4-37f5c8eb10fc c9abf0a8e6cddeebaefecb37f7f3575e { 'aliquot_tag': 'ALQ_5fde0bb1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01414.RNA-Seq.R2_L008.T C3N-01414 LUAD RNA-Seq tumor CPT0105600006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L008_R2_001.fastq.gz 3892030268 FASTQ R2_L008 unaligned CPTAC3 0749fcf3-e147-4c46-b217-145c9f899e98 fb224def9325c06bacd34a34d95e005c { 'aliquot_tag': 'ALQ_62be2201', 'gdc_sample_type': 'Primary Tumor' } +C3N-01414.RNA-Seq.genomic.T.hg38 C3N-01414 LUAD RNA-Seq tumor CPT0105600006 67dacd56-e94c-45dc-8b97-92a9a9171109.rna_seq.genomic.gdc_realn.bam 8424685295 BAM genomic harmonized CPTAC3 4c89c15b-9334-423b-8a18-0d02759beb22 65bc164eeede1a140a381d81c41f36b3 { 'aliquot_tag': 'ALQ_62be2201', 'gdc_sample_type': 'Primary Tumor' } +C3N-01414.RNA-Seq.R1_L006.A C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 180313_UNC32-K00270_0085_BHT2MGBBXX_GAGTGG_S35_L006_R1_001.fastq.gz 3884159206 FASTQ R1_L006 unaligned CPTAC3 bbfffa23-6ba2-4146-b17e-0dac46d39049 8c8342cd9cb5616373a8536b531bda4e { 'aliquot_tag': 'ALQ_5fde0bb1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01414.RNA-Seq.R1_L008.T C3N-01414 LUAD RNA-Seq tumor CPT0105600006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L008_R1_001.fastq.gz 3448561046 FASTQ R1_L008 unaligned CPTAC3 083ddf86-ad21-4447-a896-d39d75fa36b8 d470457981931e872131321588017842 { 'aliquot_tag': 'ALQ_62be2201', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01414.RNA-Seq.R2_L006.A C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 180313_UNC32-K00270_0085_BHT2MGBBXX_GAGTGG_S35_L006_R2_001.fastq.gz 4208871781 FASTQ R2_L006 unaligned CPTAC3 d2564ee1-2759-4863-86c4-37f5c8eb10fc c9abf0a8e6cddeebaefecb37f7f3575e { 'aliquot_tag': 'ALQ_5fde0bb1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01414.RNA-Seq.R2_L008.T C3N-01414 LUAD RNA-Seq tumor CPT0105600006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L008_R2_001.fastq.gz 3892030268 FASTQ R2_L008 unaligned CPTAC3 0749fcf3-e147-4c46-b217-145c9f899e98 fb224def9325c06bacd34a34d95e005c { 'aliquot_tag': 'ALQ_62be2201', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01414.RNA-Seq.transcriptome.A.hg38 C3N-01414 LUAD RNA-Seq tissue_normal CPT0105610006 4949d3de-d215-4d58-9ce1-b440ae802286.rna_seq.transcriptome.gdc_realn.bam 8979468457 BAM transcriptome harmonized CPTAC3 8230236e-9c49-4c87-a1fb-a5b991556bbb f317f3b54b2cbb0c45c01e24d078a3d8 { 'aliquot_tag': 'ALQ_5fde0bb1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01414.RNA-Seq.transcriptome.T.hg38 C3N-01414 LUAD RNA-Seq tumor CPT0105600006 67dacd56-e94c-45dc-8b97-92a9a9171109.rna_seq.transcriptome.gdc_realn.bam 9263411893 BAM transcriptome harmonized CPTAC3 a6db3a10-7b69-4493-9c8d-658af3e76205 c8c40639b532d2316667352fcc8274ae { 'aliquot_tag': 'ALQ_62be2201', 'gdc_sample_type': 'Primary Tumor' } C3N-01414.WGS.A C3N-01414 LUAD WGS tissue_normal CPT0105610009 CPT0105610009.WholeGenome.RP-1303.bam 61300120074 BAM aligned CPTAC3 a9f31c52-49f4-408f-be27-b719d730b7a7 507eba4b57fec9391f4c3bc261ede6eb { 'aliquot_tag': 'ALQ_cf611620', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25803,12 +27748,12 @@ C3N-01415.miRNA-Seq.T C3N-01415 LUAD miRNA-Seq tumor CPT0105630006 181113_UNC31- C3N-01415.miRNA-Seq.T.hg38 C3N-01415 LUAD miRNA-Seq tumor CPT0105630006 7015a6b5-7473-4903-84ab-9b7e436246bf_mirnaseq_gdc_realn.bam 288582363 BAM harmonized CPTAC3 0add4d9c-f4c7-4612-92ca-8c0f855916ce 079691ea994c343c36e9711125d8b4a2 { 'aliquot_tag': 'ALQ_251e58d1', 'gdc_sample_type': 'Primary Tumor' } C3N-01415.RNA-Seq.chimeric.A.hg38 C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 0d96e836-46ae-4601-93b8-4ade2858e396.rna_seq.chimeric.gdc_realn.bam 52219291 BAM chimeric harmonized CPTAC3 34210399-fce6-4712-b918-a51f93554ce5 9123c28a8fb9a49102f71aaf492e0cd4 { 'aliquot_tag': 'ALQ_52ce69c0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01415.RNA-Seq.chimeric.T.hg38 C3N-01415 LUAD RNA-Seq tumor CPT0105630006 2111e531-c6c3-47f0-affa-4d838b721c72.rna_seq.chimeric.gdc_realn.bam 83334617 BAM chimeric harmonized CPTAC3 c0224df9-84a0-4be4-8d9e-5c7b271a3cd8 896904d5b130885ecf37a0e4020097e4 { 'aliquot_tag': 'ALQ_251e58d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01415.RNA-Seq.genomic.A.hg38 C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 0d96e836-46ae-4601-93b8-4ade2858e396.rna_seq.genomic.gdc_realn.bam 8028925332 BAM genomic harmonized CPTAC3 b33a10c0-5ed7-4b99-9e3e-b8aa0f54f976 aa29751fd5a83ba1b5d611064eb56212 { 'aliquot_tag': 'ALQ_52ce69c0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01415.RNA-Seq.genomic.T.hg38 C3N-01415 LUAD RNA-Seq tumor CPT0105630006 2111e531-c6c3-47f0-affa-4d838b721c72.rna_seq.genomic.gdc_realn.bam 8819552066 BAM genomic harmonized CPTAC3 ee4f489c-1aff-4d44-a0bf-49bf88612260 04de0977f20c49b8dc7582fb3b21916b { 'aliquot_tag': 'ALQ_251e58d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01415.RNA-Seq.R1_L004.A C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L004_R1_001.fastq.gz 3731598497 FASTQ R1_L004 unaligned CPTAC3 77b0d409-80b7-47fb-a43e-df98348f7e34 103243e7199d7c8876492e05ed276668 { 'aliquot_tag': 'ALQ_52ce69c0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01415.RNA-Seq.R1_L007.T C3N-01415 LUAD RNA-Seq tumor CPT0105630006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L007_R1_001.fastq.gz 3741499312 FASTQ R1_L007 unaligned CPTAC3 21fbb374-55f4-4bec-b087-e94275e55154 cd40d3105e7f0235933c01060969425c { 'aliquot_tag': 'ALQ_251e58d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01415.RNA-Seq.R2_L004.A C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L004_R2_001.fastq.gz 4164646642 FASTQ R2_L004 unaligned CPTAC3 6cbbe3b0-9dd7-43c7-b7c0-5ea0a106827b 54c5f0d8b6dfb1a37f393e9d8d5f6304 { 'aliquot_tag': 'ALQ_52ce69c0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01415.RNA-Seq.R2_L007.T C3N-01415 LUAD RNA-Seq tumor CPT0105630006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L007_R2_001.fastq.gz 4238170824 FASTQ R2_L007 unaligned CPTAC3 45b86fc1-9bd8-46b6-911d-17a5477edebb 7095d4423abfead0740d4313b97c2080 { 'aliquot_tag': 'ALQ_251e58d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01415.RNA-Seq.genomic.A.hg38 C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 0d96e836-46ae-4601-93b8-4ade2858e396.rna_seq.genomic.gdc_realn.bam 8028925332 BAM genomic harmonized CPTAC3 abec9145-b7ba-45e0-b477-b4c278b52cc7 aa29751fd5a83ba1b5d611064eb56212 { 'aliquot_tag': 'ALQ_52ce69c0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01415.RNA-Seq.genomic.T.hg38 C3N-01415 LUAD RNA-Seq tumor CPT0105630006 2111e531-c6c3-47f0-affa-4d838b721c72.rna_seq.genomic.gdc_realn.bam 8819552066 BAM genomic harmonized CPTAC3 3d75ee16-91d7-4148-8ce1-09fbc67060d0 04de0977f20c49b8dc7582fb3b21916b { 'aliquot_tag': 'ALQ_251e58d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01415.RNA-Seq.R1_L004.A C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L004_R1_001.fastq.gz 3731598497 FASTQ R1_L004 unaligned CPTAC3 77b0d409-80b7-47fb-a43e-df98348f7e34 103243e7199d7c8876492e05ed276668 { 'aliquot_tag': 'ALQ_52ce69c0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01415.RNA-Seq.R1_L007.T C3N-01415 LUAD RNA-Seq tumor CPT0105630006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L007_R1_001.fastq.gz 3741499312 FASTQ R1_L007 unaligned CPTAC3 21fbb374-55f4-4bec-b087-e94275e55154 cd40d3105e7f0235933c01060969425c { 'aliquot_tag': 'ALQ_251e58d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01415.RNA-Seq.R2_L004.A C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 171215_UNC32-K00270_0073_BHN3NFBBXX_ACAGTG_S14_L004_R2_001.fastq.gz 4164646642 FASTQ R2_L004 unaligned CPTAC3 6cbbe3b0-9dd7-43c7-b7c0-5ea0a106827b 54c5f0d8b6dfb1a37f393e9d8d5f6304 { 'aliquot_tag': 'ALQ_52ce69c0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01415.RNA-Seq.R2_L007.T C3N-01415 LUAD RNA-Seq tumor CPT0105630006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L007_R2_001.fastq.gz 4238170824 FASTQ R2_L007 unaligned CPTAC3 45b86fc1-9bd8-46b6-911d-17a5477edebb 7095d4423abfead0740d4313b97c2080 { 'aliquot_tag': 'ALQ_251e58d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01415.RNA-Seq.transcriptome.A.hg38 C3N-01415 LUAD RNA-Seq tissue_normal CPT0105680006 0d96e836-46ae-4601-93b8-4ade2858e396.rna_seq.transcriptome.gdc_realn.bam 9670913612 BAM transcriptome harmonized CPTAC3 e193017e-0acb-444b-b02f-6bb0d7cdb4f5 b3c61f8c47f867376380601add56513f { 'aliquot_tag': 'ALQ_52ce69c0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01415.RNA-Seq.transcriptome.T.hg38 C3N-01415 LUAD RNA-Seq tumor CPT0105630006 2111e531-c6c3-47f0-affa-4d838b721c72.rna_seq.transcriptome.gdc_realn.bam 11092869592 BAM transcriptome harmonized CPTAC3 8c31f7ac-268d-4655-b3f1-5df4119bed0f 25c679aef4bae2a22583c294793270d5 { 'aliquot_tag': 'ALQ_251e58d1', 'gdc_sample_type': 'Primary Tumor' } C3N-01415.WGS.A C3N-01415 LUAD WGS tissue_normal CPT0105680009 CPT0105680009.WholeGenome.RP-1303.bam 58934193412 BAM aligned CPTAC3 558029f2-3f7d-44a4-b1c5-09f1ae414810 5611b500e8e0b45ea35de23de9330934 { 'aliquot_tag': 'ALQ_c2717451', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25833,12 +27778,12 @@ C3N-01416.miRNA-Seq.T C3N-01416 LUAD miRNA-Seq tumor CPT0105710006 181119_UNC31- C3N-01416.miRNA-Seq.T.hg38 C3N-01416 LUAD miRNA-Seq tumor CPT0105710006 9fb7cd36-6956-4d4f-9d61-94d1a05e6e4e_mirnaseq_gdc_realn.bam 195240335 BAM harmonized CPTAC3 f1ff99cb-635e-4a31-8774-e579063a82cd 8a9a2aed1388fd2c155dd2d5f7e3c23e { 'aliquot_tag': 'ALQ_9482d814', 'gdc_sample_type': 'Primary Tumor' } C3N-01416.RNA-Seq.chimeric.A.hg38 C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 5058499e-360f-42cd-ae37-1512b5b0f200.rna_seq.chimeric.gdc_realn.bam 99598413 BAM chimeric harmonized CPTAC3 f9d4b1d8-45a5-49df-9476-41d631b53a80 a5bd8254065e6a5375d3dbb2be591bde { 'aliquot_tag': 'ALQ_5c625764', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01416.RNA-Seq.chimeric.T.hg38 C3N-01416 LUAD RNA-Seq tumor CPT0105710006 805fc6e7-4b34-4166-b490-700e7e2a77bf.rna_seq.chimeric.gdc_realn.bam 72043906 BAM chimeric harmonized CPTAC3 b1d59943-6ce2-4282-b7e8-82572e25f90f ea2a05b01e3caf8e6019e94e2aa0f68f { 'aliquot_tag': 'ALQ_9482d814', 'gdc_sample_type': 'Primary Tumor' } -C3N-01416.RNA-Seq.genomic.A.hg38 C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 5058499e-360f-42cd-ae37-1512b5b0f200.rna_seq.genomic.gdc_realn.bam 8991978718 BAM genomic harmonized CPTAC3 f416f0c3-7e7c-49d3-af3b-4a70f757d4c5 32e72a0f3653b94870bd20988c53c53b { 'aliquot_tag': 'ALQ_5c625764', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01416.RNA-Seq.genomic.T.hg38 C3N-01416 LUAD RNA-Seq tumor CPT0105710006 805fc6e7-4b34-4166-b490-700e7e2a77bf.rna_seq.genomic.gdc_realn.bam 10289537860 BAM genomic harmonized CPTAC3 87388f59-e26d-4320-ab85-919752f02508 6ff31101e5afbcefb75e1af4cccfecb0 { 'aliquot_tag': 'ALQ_9482d814', 'gdc_sample_type': 'Primary Tumor' } -C3N-01416.RNA-Seq.R1_L007.A C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L007_R1_001.fastq.gz 4234679336 FASTQ R1_L007 unaligned CPTAC3 b8002bd5-4758-43e0-8be9-18da4c513cd4 7a0766428b270bcf59f1915976b49731 { 'aliquot_tag': 'ALQ_5c625764', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01416.RNA-Seq.R1_L007.T C3N-01416 LUAD RNA-Seq tumor CPT0105710006 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L007_R1_001.fastq.gz 4629598212 FASTQ R1_L007 unaligned CPTAC3 5ff9e7d8-7662-4e2c-9e80-83e70e8ef934 b74b1384ce86929544e8dde09c06816b { 'aliquot_tag': 'ALQ_9482d814', 'gdc_sample_type': 'Primary Tumor' } -C3N-01416.RNA-Seq.R2_L007.A C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L007_R2_001.fastq.gz 4702801558 FASTQ R2_L007 unaligned CPTAC3 a171d956-4934-438d-b19d-1b2d7cbe12f5 604698e4a293e7f0d6625f380329785c { 'aliquot_tag': 'ALQ_5c625764', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01416.RNA-Seq.R2_L007.T C3N-01416 LUAD RNA-Seq tumor CPT0105710006 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L007_R2_001.fastq.gz 5200400455 FASTQ R2_L007 unaligned CPTAC3 d0d38a99-79c6-40ca-866e-119dc61e8817 a9f861cccda5553ffaa05b956ea747a6 { 'aliquot_tag': 'ALQ_9482d814', 'gdc_sample_type': 'Primary Tumor' } +C3N-01416.RNA-Seq.genomic.A.hg38 C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 5058499e-360f-42cd-ae37-1512b5b0f200.rna_seq.genomic.gdc_realn.bam 8991978718 BAM genomic harmonized CPTAC3 4ec04f5b-4ae4-4c2f-beb2-3e15746717cc 32e72a0f3653b94870bd20988c53c53b { 'aliquot_tag': 'ALQ_5c625764', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01416.RNA-Seq.genomic.T.hg38 C3N-01416 LUAD RNA-Seq tumor CPT0105710006 805fc6e7-4b34-4166-b490-700e7e2a77bf.rna_seq.genomic.gdc_realn.bam 10289537860 BAM genomic harmonized CPTAC3 d9523d66-715e-4d96-b65f-7eea0b901047 6ff31101e5afbcefb75e1af4cccfecb0 { 'aliquot_tag': 'ALQ_9482d814', 'gdc_sample_type': 'Primary Tumor' } +C3N-01416.RNA-Seq.R1_L007.A C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L007_R1_001.fastq.gz 4234679336 FASTQ R1_L007 unaligned CPTAC3 b8002bd5-4758-43e0-8be9-18da4c513cd4 7a0766428b270bcf59f1915976b49731 { 'aliquot_tag': 'ALQ_5c625764', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01416.RNA-Seq.R1_L007.T C3N-01416 LUAD RNA-Seq tumor CPT0105710006 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L007_R1_001.fastq.gz 4629598212 FASTQ R1_L007 unaligned CPTAC3 5ff9e7d8-7662-4e2c-9e80-83e70e8ef934 b74b1384ce86929544e8dde09c06816b { 'aliquot_tag': 'ALQ_9482d814', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01416.RNA-Seq.R2_L007.A C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 180109_UNC31-K00269_0107_AHNHY2BBXX_CAGATC_S3_L007_R2_001.fastq.gz 4702801558 FASTQ R2_L007 unaligned CPTAC3 a171d956-4934-438d-b19d-1b2d7cbe12f5 604698e4a293e7f0d6625f380329785c { 'aliquot_tag': 'ALQ_5c625764', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01416.RNA-Seq.R2_L007.T C3N-01416 LUAD RNA-Seq tumor CPT0105710006 171109_UNC31-K00269_0091_BHMFGTBBXX_TAGCTT_S2_L007_R2_001.fastq.gz 5200400455 FASTQ R2_L007 unaligned CPTAC3 d0d38a99-79c6-40ca-866e-119dc61e8817 a9f861cccda5553ffaa05b956ea747a6 { 'aliquot_tag': 'ALQ_9482d814', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01416.RNA-Seq.transcriptome.A.hg38 C3N-01416 LUAD RNA-Seq tissue_normal CPT0105740006 5058499e-360f-42cd-ae37-1512b5b0f200.rna_seq.transcriptome.gdc_realn.bam 11090024312 BAM transcriptome harmonized CPTAC3 13ae2856-f886-4621-9241-ae8bb8e11cf0 73fdddd36b0a81d39868519f10b1d4bd { 'aliquot_tag': 'ALQ_5c625764', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01416.RNA-Seq.transcriptome.T.hg38 C3N-01416 LUAD RNA-Seq tumor CPT0105710006 805fc6e7-4b34-4166-b490-700e7e2a77bf.rna_seq.transcriptome.gdc_realn.bam 12685198224 BAM transcriptome harmonized CPTAC3 49af5ea8-f90e-4503-a278-08de40887a28 bdb285e29374770283c1b885643bfeff { 'aliquot_tag': 'ALQ_9482d814', 'gdc_sample_type': 'Primary Tumor' } C3N-01416.WGS.A C3N-01416 LUAD WGS tissue_normal CPT0105740009 CPT0105740009.WholeGenome.RP-1303.bam 52694397961 BAM aligned CPTAC3 78d5f1f9-f685-49c2-86b1-6119afc42c85 fc9d868edd0771dbee6d5390f2ede171 { 'aliquot_tag': 'ALQ_ccdd4af5', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25859,16 +27804,16 @@ C3N-01417.miRNA-Seq.A C3N-01417 LUAD miRNA-Seq tissue_normal CPT0105790006 19010 C3N-01417.miRNA-Seq.A.hg38 C3N-01417 LUAD miRNA-Seq tissue_normal CPT0105790006 29a466c5-bd9c-44a4-b8f7-fcb89d7be84b_mirnaseq_gdc_realn.bam 333116105 BAM harmonized CPTAC3 dc708479-7a5f-42b3-82b2-9dd7aa2a602d 149addb91e48114c6d9a131b6c4c4cc8 { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01417.miRNA-Seq.T C3N-01417 LUAD miRNA-Seq tumor CPT0105780006 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGATC_S7_L002_R1_001.unaln.bam 215783445 BAM unaligned CPTAC3 a6b1af7c-a965-43d5-8cbe-0ca8fb113a79 a822bbc74e0331061fe68044e7110fba { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor' } C3N-01417.miRNA-Seq.T.hg38 C3N-01417 LUAD miRNA-Seq tumor CPT0105780006 6db76d1e-96cd-4970-93bf-6c9b79929ffa_mirnaseq_gdc_realn.bam 231830173 BAM harmonized CPTAC3 b1dc7d14-9c2e-4ba9-a045-334069a51c9c 53d6fb20971e8e9d443d81d733ad6043 { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor' } -C3N-01417.RNA-Seq.chimeric.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 db68ecd8-b28e-416b-a5e8-e94d39a738dc.rna_seq.chimeric.gdc_realn.bam 29578445 BAM chimeric harmonized CPTAC3 875f590d-ac49-47f0-ba39-49575e03793b e336bf67659562f1277311e490240f8f { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01417.RNA-Seq.chimeric.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 295ab4e9-8b39-44b1-aa49-d6db6330ec15.rna_seq.chimeric.gdc_realn.bam 29600772 BAM chimeric harmonized CPTAC3 b7290785-4ebb-4651-9d76-b38ebf6a019e 77f0d978ff9dbcd5b70a2854e8a21379 { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor' } -C3N-01417.RNA-Seq.genomic.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 db68ecd8-b28e-416b-a5e8-e94d39a738dc.rna_seq.genomic.gdc_realn.bam 10808124836 BAM genomic harmonized CPTAC3 3f391e09-68e6-433d-97a0-647ca5fe1c6f a11d6d0d724c8b672f221b4c0a0a4283 { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01417.RNA-Seq.genomic.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 295ab4e9-8b39-44b1-aa49-d6db6330ec15.rna_seq.genomic.gdc_realn.bam 11101593107 BAM genomic harmonized CPTAC3 a362fd58-9c14-4201-91e0-b34b9cb8f0d8 1f47fafc06e28a5b8297577e9be47926 { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor' } -C3N-01417.RNA-Seq.R1_L001.A C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L001_R1_001.fastq.gz 4076450368 FASTQ R1_L001 unaligned CPTAC3 59e1bd20-c638-42b1-8ff6-995edca4f72c 3bc26a462d45008f5ea05a4a84155948 { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01417.RNA-Seq.R1_L001.T C3N-01417 LUAD RNA-Seq tumor CPT0105780006 190115_UNC31-K00269_0179_BH357YBBXY_CAGATC_S1_L001_R1_001.fastq.gz 3768015532 FASTQ R1_L001 unaligned CPTAC3 39f8264a-bf45-44f2-9738-dc1f5c03b7c3 270035ecf97961b5efe94dcba14dcc49 { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor' } -C3N-01417.RNA-Seq.R2_L001.A C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L001_R2_001.fastq.gz 4410655751 FASTQ R2_L001 unaligned CPTAC3 3d3ee85a-d7f1-4b95-87a1-3baa528db7ee 7f00f1492de3431bdf4d7f742e51a53e { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01417.RNA-Seq.R2_L001.T C3N-01417 LUAD RNA-Seq tumor CPT0105780006 190115_UNC31-K00269_0179_BH357YBBXY_CAGATC_S1_L001_R2_001.fastq.gz 4160511963 FASTQ R2_L001 unaligned CPTAC3 a30ace3b-f582-4852-b0ff-3611c721fa18 df85c13dafa65291d3fbdd019e6d3fe4 { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor' } -C3N-01417.RNA-Seq.transcriptome.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 db68ecd8-b28e-416b-a5e8-e94d39a738dc.rna_seq.transcriptome.gdc_realn.bam 9928572051 BAM transcriptome harmonized CPTAC3 9010577e-1cb3-4a10-8d48-e85954468858 504e9044f593354fb7c9a3112c804bca { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01417.RNA-Seq.transcriptome.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 295ab4e9-8b39-44b1-aa49-d6db6330ec15.rna_seq.transcriptome.gdc_realn.bam 8517880317 BAM transcriptome harmonized CPTAC3 0f66bdb4-d6ef-45c8-8257-7544615bf04e b54a2e89863117d6921d16b7a687211c { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor' } +C3N-01417.RNA-Seq.chimeric.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 ba88c86c-627e-4cc9-9a03-6f199cf3c803.rna_seq.chimeric.gdc_realn.bam 29556386 BAM chimeric harmonized CPTAC3 501925ce-437b-4a24-8c98-4bb39ab5d146 0c6fe32cea379d2ac7c29ac4c471ea69 { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01417.RNA-Seq.chimeric.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 dd3c0695-59e9-4928-9f05-3a6c2f3f6e41.rna_seq.chimeric.gdc_realn.bam 29593679 BAM chimeric harmonized CPTAC3 1f4ef151-4fc1-4c20-a51e-7631338e1f9c 0f8ac09a4bf24810ee7f9f2b59df90be { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor' } +C3N-01417.RNA-Seq.genomic.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 ba88c86c-627e-4cc9-9a03-6f199cf3c803.rna_seq.genomic.gdc_realn.bam 10807902295 BAM genomic harmonized CPTAC3 e0841c07-150b-47e6-9881-8385028a5e61 f2c197101c0df830e660c92ce74c5365 { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01417.RNA-Seq.genomic.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 dd3c0695-59e9-4928-9f05-3a6c2f3f6e41.rna_seq.genomic.gdc_realn.bam 11102385446 BAM genomic harmonized CPTAC3 b443b6fc-3159-4762-8cb8-6a791903561e 309909c539b99417ec17d157d76a6b1d { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor' } +C3N-01417.RNA-Seq.R1_L001.A C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L001_R1_001.fastq.gz 4076450368 FASTQ R1_L001 unaligned CPTAC3 59e1bd20-c638-42b1-8ff6-995edca4f72c 3bc26a462d45008f5ea05a4a84155948 { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01417.RNA-Seq.R1_L001.T C3N-01417 LUAD RNA-Seq tumor CPT0105780006 190115_UNC31-K00269_0179_BH357YBBXY_CAGATC_S1_L001_R1_001.fastq.gz 3768015532 FASTQ R1_L001 unaligned CPTAC3 39f8264a-bf45-44f2-9738-dc1f5c03b7c3 270035ecf97961b5efe94dcba14dcc49 { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01417.RNA-Seq.R2_L001.A C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 181207_UNC32-K00270_0137_BH2LYCBBXY_AGTTCC_S2_L001_R2_001.fastq.gz 4410655751 FASTQ R2_L001 unaligned CPTAC3 3d3ee85a-d7f1-4b95-87a1-3baa528db7ee 7f00f1492de3431bdf4d7f742e51a53e { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01417.RNA-Seq.R2_L001.T C3N-01417 LUAD RNA-Seq tumor CPT0105780006 190115_UNC31-K00269_0179_BH357YBBXY_CAGATC_S1_L001_R2_001.fastq.gz 4160511963 FASTQ R2_L001 unaligned CPTAC3 a30ace3b-f582-4852-b0ff-3611c721fa18 df85c13dafa65291d3fbdd019e6d3fe4 { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01417.RNA-Seq.transcriptome.A.hg38 C3N-01417 LUAD RNA-Seq tissue_normal CPT0105790006 ba88c86c-627e-4cc9-9a03-6f199cf3c803.rna_seq.transcriptome.gdc_realn.bam 11147874547 BAM transcriptome harmonized CPTAC3 aa397a49-3c6a-4e4a-aec5-22a37b387199 f03275c4de57d8a07589855c365deb73 { 'aliquot_tag': 'ALQ_a4f293d5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01417.RNA-Seq.transcriptome.T.hg38 C3N-01417 LUAD RNA-Seq tumor CPT0105780006 dd3c0695-59e9-4928-9f05-3a6c2f3f6e41.rna_seq.transcriptome.gdc_realn.bam 9601299650 BAM transcriptome harmonized CPTAC3 42494443-f834-425a-941e-d8d1e5e06720 fcf28494da94011e3bdf2615743e85e3 { 'aliquot_tag': 'ALQ_9992ba65', 'gdc_sample_type': 'Primary Tumor' } C3N-01417.WGS.A C3N-01417 LUAD WGS tissue_normal CPT0105790009 CPT0105790009.WholeGenome.RP-1303.bam 55599543061 BAM aligned CPTAC3 59a7fc97-7136-4dbd-9037-3d4f4385e097 30711a65413491935a01c178bd642fa6 { 'aliquot_tag': 'ALQ_344d8e44', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01417.WGS.A.hg38 C3N-01417 LUAD WGS tissue_normal CPT0105790009 5301d77c-29e2-4b40-bfda-49021e1913cc_wgs_gdc_realn.bam 81886257957 BAM harmonized CPTAC3 6aee97aa-965c-4ba2-bf5f-5eb3b565aba3 5d1057e7ab3201bdaddea3df4c916eb0 { 'aliquot_tag': 'ALQ_344d8e44', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01417.WGS.N C3N-01417 LUAD WGS blood_normal CPT0108220004 CPT0108220004.WholeGenome.RP-1303.bam 60305899415 BAM aligned CPTAC3 f078d9e2-2d76-4d04-b510-1620b7466f85 1c38d139922542b25cfc62d87ebcf314 { 'aliquot_tag': 'ALQ_c36339b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25893,16 +27838,16 @@ C3N-01419.miRNA-Seq.A C3N-01419 LUAD miRNA-Seq tissue_normal CPT0118060005 19010 C3N-01419.miRNA-Seq.A.hg38 C3N-01419 LUAD miRNA-Seq tissue_normal CPT0118060005 a3b47e97-bc4c-4415-bec4-cd7be6de9b63_mirnaseq_gdc_realn.bam 261040786 BAM harmonized CPTAC3 9911b26d-1535-405c-8a07-348e67db1e34 edfdc65121dcd1c7c6f10302ee7983fd { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01419.miRNA-Seq.T C3N-01419 LUAD miRNA-Seq tumor CPT0118040006 190108_UNC31-K00269_0176_AHYGLVBBXX_TAGCTT_S10_L002_R1_001.unaln.bam 217628396 BAM unaligned CPTAC3 636a2829-8a7f-46bb-a382-13726c393ef6 ccd61f8cf7b14c69bafd39a7a9851076 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor' } C3N-01419.miRNA-Seq.T.hg38 C3N-01419 LUAD miRNA-Seq tumor CPT0118040006 fd6b897d-37b8-4cde-b0e2-4a082bc42bdd_mirnaseq_gdc_realn.bam 235681434 BAM harmonized CPTAC3 421b41a9-afc9-4018-96c1-7a904e0e516e 915abf5e5094113430103ed4afbe2a45 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor' } -C3N-01419.RNA-Seq.chimeric.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 b176a1f0-bfc5-4c37-87da-ab379b0b5671.rna_seq.chimeric.gdc_realn.bam 26499656 BAM chimeric harmonized CPTAC3 2692ec71-141a-4ab6-8b88-99b6e7e9237e 8f9b44b1dc1a2c11871441505f2c1884 { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01419.RNA-Seq.chimeric.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 4f44029c-4a2f-4951-9d69-15a771652e70.rna_seq.chimeric.gdc_realn.bam 30856386 BAM chimeric harmonized CPTAC3 6f94c359-f2cf-4cce-9c1f-b8126855fcf1 8a74a2bb4387287daa1000fdcfcc8e84 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor' } -C3N-01419.RNA-Seq.genomic.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 b176a1f0-bfc5-4c37-87da-ab379b0b5671.rna_seq.genomic.gdc_realn.bam 9581915860 BAM genomic harmonized CPTAC3 7d483abe-aa84-4835-a1c2-b580f2470e58 d813f74e0e11d1866d004ca03be9b423 { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01419.RNA-Seq.genomic.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 4f44029c-4a2f-4951-9d69-15a771652e70.rna_seq.genomic.gdc_realn.bam 9263881422 BAM genomic harmonized CPTAC3 9488a4f9-464d-4f41-9157-5e9c843b7d9e b4a0281e92f459665e07beca485660cb { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor' } -C3N-01419.RNA-Seq.R1_L001.A C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L001_R1_001.fastq.gz 3566867492 FASTQ R1_L001 unaligned CPTAC3 23eda113-eb10-478b-81a6-a150dad44e0f 72ac3988ea9d72c23538f019449d675f { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01419.RNA-Seq.R1_L008.T C3N-01419 LUAD RNA-Seq tumor CPT0118040006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L008_R1_001.fastq.gz 4004316578 FASTQ R1_L008 unaligned CPTAC3 22f0219a-0e25-4215-847f-7fb87cf8f00c 866adcbb707f46b784d40ac1fb0a4c17 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor' } -C3N-01419.RNA-Seq.R2_L001.A C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L001_R2_001.fastq.gz 3951203658 FASTQ R2_L001 unaligned CPTAC3 a11b9459-305f-4346-ab6b-ff251558b79b 1112bd05d26e0245f36069431d9cf10d { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01419.RNA-Seq.R2_L008.T C3N-01419 LUAD RNA-Seq tumor CPT0118040006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L008_R2_001.fastq.gz 4535754942 FASTQ R2_L008 unaligned CPTAC3 800d2b72-c4e3-42b9-b976-bf3216ff2412 292b1443536221f337e595d6c93d6a98 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor' } -C3N-01419.RNA-Seq.transcriptome.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 b176a1f0-bfc5-4c37-87da-ab379b0b5671.rna_seq.transcriptome.gdc_realn.bam 10199198633 BAM transcriptome harmonized CPTAC3 0860cf4a-30ee-4217-8be3-dd1f8e8ea16f d242631dd788a0a03ab2c5adbc104f82 { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01419.RNA-Seq.transcriptome.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 4f44029c-4a2f-4951-9d69-15a771652e70.rna_seq.transcriptome.gdc_realn.bam 12536802856 BAM transcriptome harmonized CPTAC3 8a1adb30-d88c-415f-a728-e8fc420b1b21 74c5b26df69ed371a74b33f3d3082b05 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor' } +C3N-01419.RNA-Seq.chimeric.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 cfb5e396-b2fc-41be-8993-ec160d5b90ee.rna_seq.chimeric.gdc_realn.bam 26475754 BAM chimeric harmonized CPTAC3 da9c9e3e-04e5-471f-8781-9d093bf4c1d9 71ef485224de1e9a9d991791c279b56b { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01419.RNA-Seq.chimeric.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 b0919885-2876-4341-8ceb-b0a46732e461.rna_seq.chimeric.gdc_realn.bam 30853523 BAM chimeric harmonized CPTAC3 3d43c44b-628e-4d56-92d9-67ff2c72c237 00457d93dcc99e4a857fceb7a80f11d5 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor' } +C3N-01419.RNA-Seq.genomic.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 cfb5e396-b2fc-41be-8993-ec160d5b90ee.rna_seq.genomic.gdc_realn.bam 9584128836 BAM genomic harmonized CPTAC3 945159da-0618-4c71-a179-2be53dcc6acc 8cae1180f8f053691c13e6906650e5a7 { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01419.RNA-Seq.genomic.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 b0919885-2876-4341-8ceb-b0a46732e461.rna_seq.genomic.gdc_realn.bam 9264924624 BAM genomic harmonized CPTAC3 8ee023cc-f6f6-4160-9225-c273606a7441 084eedc9d3828ca19cd95aca97bba323 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor' } +C3N-01419.RNA-Seq.R1_L001.A C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L001_R1_001.fastq.gz 3566867492 FASTQ R1_L001 unaligned CPTAC3 23eda113-eb10-478b-81a6-a150dad44e0f 72ac3988ea9d72c23538f019449d675f { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01419.RNA-Seq.R1_L008.T C3N-01419 LUAD RNA-Seq tumor CPT0118040006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L008_R1_001.fastq.gz 4004316578 FASTQ R1_L008 unaligned CPTAC3 22f0219a-0e25-4215-847f-7fb87cf8f00c 866adcbb707f46b784d40ac1fb0a4c17 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01419.RNA-Seq.R2_L001.A C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 181207_UNC32-K00270_0137_BH2LYCBBXY_ATGTCA_S1_L001_R2_001.fastq.gz 3951203658 FASTQ R2_L001 unaligned CPTAC3 a11b9459-305f-4346-ab6b-ff251558b79b 1112bd05d26e0245f36069431d9cf10d { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01419.RNA-Seq.R2_L008.T C3N-01419 LUAD RNA-Seq tumor CPT0118040006 181207_UNC32-K00270_0137_BH2LYCBBXY_TAGCTT_S6_L008_R2_001.fastq.gz 4535754942 FASTQ R2_L008 unaligned CPTAC3 800d2b72-c4e3-42b9-b976-bf3216ff2412 292b1443536221f337e595d6c93d6a98 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01419.RNA-Seq.transcriptome.A.hg38 C3N-01419 LUAD RNA-Seq tissue_normal CPT0118060005 cfb5e396-b2fc-41be-8993-ec160d5b90ee.rna_seq.transcriptome.gdc_realn.bam 11510342951 BAM transcriptome harmonized CPTAC3 0c2f77f5-2b7f-494b-a0db-6e02c6c8980e 0d6f83f68167b6d9e7c7497741a16e22 { 'aliquot_tag': 'ALQ_fd30458', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01419.RNA-Seq.transcriptome.T.hg38 C3N-01419 LUAD RNA-Seq tumor CPT0118040006 b0919885-2876-4341-8ceb-b0a46732e461.rna_seq.transcriptome.gdc_realn.bam 14055168263 BAM transcriptome harmonized CPTAC3 66affcc7-5ff0-4e44-9fcd-ab745f13154c 89cf206c4bf5cb5315532e4eec540131 { 'aliquot_tag': 'ALQ_ec1a0682', 'gdc_sample_type': 'Primary Tumor' } C3N-01419.WGS.N C3N-01419 LUAD WGS blood_normal CPT0119310002 CPT0119310002.WholeGenome.RP-1303.bam 61749472469 BAM aligned CPTAC3 1f0aa478-aaed-4214-b69c-c791e8765ab1 bef01d5668871992b23f3ee412d5df27 { 'aliquot_tag': 'ALQ_37434f1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01419.WGS.N.hg38 C3N-01419 LUAD WGS blood_normal CPT0119310002 8541ee06-47ca-4632-af45-dcf0ae9e50a2_wgs_gdc_realn.bam 90725050575 BAM harmonized CPTAC3 558c8e7a-0b8e-468a-a47d-c9ecf7f3fed5 9427e1273f17143aa67ced86a7505c9a { 'aliquot_tag': 'ALQ_37434f1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01419.WGS.T C3N-01419 LUAD WGS tumor CPT0118040009 CPT0118040009.WholeGenome.RP-1303.bam 57876996791 BAM aligned CPTAC3 99832e7c-64cd-401b-92a9-934dd4941ab3 348e6ffcc2f87eb7827d975b6a11771a { 'aliquot_tag': 'ALQ_7ca51b13', 'gdc_sample_type': 'Primary Tumor' } @@ -25921,12 +27866,12 @@ C3N-01488.miRNA-Seq.T C3N-01488 LUAD miRNA-Seq tumor CPT0118160006 181119_UNC31- C3N-01488.miRNA-Seq.T.hg38 C3N-01488 LUAD miRNA-Seq tumor CPT0118160006 1009e10d-7d6d-448a-8035-f740a850f697_mirnaseq_gdc_realn.bam 322692858 BAM harmonized CPTAC3 02d12d19-2a97-4b07-9c5b-0cc7226c7efd 37db12be8a81b019d2bd0abcb1e44830 { 'aliquot_tag': 'ALQ_5d868647', 'gdc_sample_type': 'Primary Tumor' } C3N-01488.RNA-Seq.chimeric.A.hg38 C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 8705156e-0342-43f9-930c-4b39d1657b81.rna_seq.chimeric.gdc_realn.bam 136231259 BAM chimeric harmonized CPTAC3 29ab4188-4252-4bcc-b90a-cae41b07c34c 998a0df3ad9d25a97b99ab877340b1d2 { 'aliquot_tag': 'ALQ_e2b63826', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01488.RNA-Seq.chimeric.T.hg38 C3N-01488 LUAD RNA-Seq tumor CPT0118160006 33b3f944-7d8a-4a24-aeb2-da363b6ac0b9.rna_seq.chimeric.gdc_realn.bam 159849586 BAM chimeric harmonized CPTAC3 0329d3c6-b422-4a0e-9894-1ccaf2aa5797 5c48f33a2d13ae0092cea0775b572446 { 'aliquot_tag': 'ALQ_5d868647', 'gdc_sample_type': 'Primary Tumor' } -C3N-01488.RNA-Seq.genomic.A.hg38 C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 8705156e-0342-43f9-930c-4b39d1657b81.rna_seq.genomic.gdc_realn.bam 8925367906 BAM genomic harmonized CPTAC3 77b5d68c-f4ae-400c-8da9-c877eb3f3003 7bc5a8a4e38496468a7852f17a093674 { 'aliquot_tag': 'ALQ_e2b63826', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01488.RNA-Seq.genomic.T.hg38 C3N-01488 LUAD RNA-Seq tumor CPT0118160006 33b3f944-7d8a-4a24-aeb2-da363b6ac0b9.rna_seq.genomic.gdc_realn.bam 9944416505 BAM genomic harmonized CPTAC3 ed84438a-7a83-435a-a0dc-94cf3369e201 a78b184214b3e5d392838e23b8e5c864 { 'aliquot_tag': 'ALQ_5d868647', 'gdc_sample_type': 'Primary Tumor' } -C3N-01488.RNA-Seq.R1_L002.T C3N-01488 LUAD RNA-Seq tumor CPT0118160006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L002_R1_001.fastq.gz 4233657580 FASTQ R1_L002 unaligned CPTAC3 b9e97367-0fdb-41e2-8917-0a8fcce33380 3b5d2f8ccefa39c2f207cb587ba90aa2 { 'aliquot_tag': 'ALQ_5d868647', 'gdc_sample_type': 'Primary Tumor' } -C3N-01488.RNA-Seq.R1_L006.A C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 180109_UNC31-K00269_0107_AHNHY2BBXX_GGCTAC_S20_L006_R1_001.fastq.gz 3923087012 FASTQ R1_L006 unaligned CPTAC3 d68369b9-dafa-448b-86e3-cc76f75c78da 4dc3b42a9c628465690f0ff8d5a97d28 { 'aliquot_tag': 'ALQ_e2b63826', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01488.RNA-Seq.R2_L002.T C3N-01488 LUAD RNA-Seq tumor CPT0118160006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L002_R2_001.fastq.gz 4781371278 FASTQ R2_L002 unaligned CPTAC3 0547b0d9-70e1-4dfe-a7e6-1f84f7508bfc 9206bbb6415d8ac00f25f8d7df917f6f { 'aliquot_tag': 'ALQ_5d868647', 'gdc_sample_type': 'Primary Tumor' } -C3N-01488.RNA-Seq.R2_L006.A C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 180109_UNC31-K00269_0107_AHNHY2BBXX_GGCTAC_S20_L006_R2_001.fastq.gz 4494329726 FASTQ R2_L006 unaligned CPTAC3 446391d3-8bfc-4326-924b-218583233ba8 e2c5d95fb1dc72d1593b568b41cf0d46 { 'aliquot_tag': 'ALQ_e2b63826', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01488.RNA-Seq.genomic.A.hg38 C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 8705156e-0342-43f9-930c-4b39d1657b81.rna_seq.genomic.gdc_realn.bam 8925367906 BAM genomic harmonized CPTAC3 519905ab-966f-440b-87bd-f1075daa50fa 7bc5a8a4e38496468a7852f17a093674 { 'aliquot_tag': 'ALQ_e2b63826', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01488.RNA-Seq.genomic.T.hg38 C3N-01488 LUAD RNA-Seq tumor CPT0118160006 33b3f944-7d8a-4a24-aeb2-da363b6ac0b9.rna_seq.genomic.gdc_realn.bam 9944416505 BAM genomic harmonized CPTAC3 4b875c3c-e87d-4610-9877-c870fc2b0649 a78b184214b3e5d392838e23b8e5c864 { 'aliquot_tag': 'ALQ_5d868647', 'gdc_sample_type': 'Primary Tumor' } +C3N-01488.RNA-Seq.R1_L002.T C3N-01488 LUAD RNA-Seq tumor CPT0118160006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L002_R1_001.fastq.gz 4233657580 FASTQ R1_L002 unaligned CPTAC3 b9e97367-0fdb-41e2-8917-0a8fcce33380 3b5d2f8ccefa39c2f207cb587ba90aa2 { 'aliquot_tag': 'ALQ_5d868647', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01488.RNA-Seq.R1_L006.A C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 180109_UNC31-K00269_0107_AHNHY2BBXX_GGCTAC_S20_L006_R1_001.fastq.gz 3923087012 FASTQ R1_L006 unaligned CPTAC3 d68369b9-dafa-448b-86e3-cc76f75c78da 4dc3b42a9c628465690f0ff8d5a97d28 { 'aliquot_tag': 'ALQ_e2b63826', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01488.RNA-Seq.R2_L002.T C3N-01488 LUAD RNA-Seq tumor CPT0118160006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACTTGA_S6_L002_R2_001.fastq.gz 4781371278 FASTQ R2_L002 unaligned CPTAC3 0547b0d9-70e1-4dfe-a7e6-1f84f7508bfc 9206bbb6415d8ac00f25f8d7df917f6f { 'aliquot_tag': 'ALQ_5d868647', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01488.RNA-Seq.R2_L006.A C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 180109_UNC31-K00269_0107_AHNHY2BBXX_GGCTAC_S20_L006_R2_001.fastq.gz 4494329726 FASTQ R2_L006 unaligned CPTAC3 446391d3-8bfc-4326-924b-218583233ba8 e2c5d95fb1dc72d1593b568b41cf0d46 { 'aliquot_tag': 'ALQ_e2b63826', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-01488.RNA-Seq.transcriptome.A.hg38 C3N-01488 LUAD RNA-Seq tissue_normal CPT0118180006 8705156e-0342-43f9-930c-4b39d1657b81.rna_seq.transcriptome.gdc_realn.bam 10038412636 BAM transcriptome harmonized CPTAC3 e6a87dd0-9229-4496-b100-79be6cde5da7 b3ece28ea9974f4e87aaa5f372dc8421 { 'aliquot_tag': 'ALQ_e2b63826', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01488.RNA-Seq.transcriptome.T.hg38 C3N-01488 LUAD RNA-Seq tumor CPT0118160006 33b3f944-7d8a-4a24-aeb2-da363b6ac0b9.rna_seq.transcriptome.gdc_realn.bam 10304122885 BAM transcriptome harmonized CPTAC3 07d7f8ad-3528-4f3d-8ae6-830d0f80c36e 67023966be45f5fad0fdd1fd1cd1046b { 'aliquot_tag': 'ALQ_5d868647', 'gdc_sample_type': 'Primary Tumor' } C3N-01488.WGS.A C3N-01488 LUAD WGS tissue_normal CPT0118180009 CPT0118180009.WholeGenome.RP-1303.bam 62739560675 BAM aligned CPTAC3 3e73c9ae-88b9-4888-a5ca-34d82d8b5baf bf722681ed9fddc6c7404a258ade6664 { 'aliquot_tag': 'ALQ_720925b7', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25951,12 +27896,12 @@ C3N-01489.miRNA-Seq.T C3N-01489 LUAD miRNA-Seq tumor CPT0105940006 181113_UNC31- C3N-01489.miRNA-Seq.T.hg38 C3N-01489 LUAD miRNA-Seq tumor CPT0105940006 6d516955-0fe2-4f55-97e8-f907007aa30c_mirnaseq_gdc_realn.bam 223053864 BAM harmonized CPTAC3 d22958da-5c18-46c8-80b4-4b450fc504de c7c911ccebbf878d88d02c2f10a8828d { 'aliquot_tag': 'ALQ_66683614', 'gdc_sample_type': 'Primary Tumor' } C3N-01489.RNA-Seq.chimeric.A.hg38 C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 4e0e8b07-e9c6-44cd-bff4-f813fc45a3f5.rna_seq.chimeric.gdc_realn.bam 106812053 BAM chimeric harmonized CPTAC3 12c2c061-c04d-41bf-a9e6-ebf66a8077b3 b430685a50d50ec252a273b783fc81a3 { 'aliquot_tag': 'ALQ_a398db15', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01489.RNA-Seq.chimeric.T.hg38 C3N-01489 LUAD RNA-Seq tumor CPT0105940006 c7b3d94d-9e9e-47d3-90e7-fc86ef5d5975.rna_seq.chimeric.gdc_realn.bam 99597541 BAM chimeric harmonized CPTAC3 7461f4c4-8639-4816-869e-0b00e00bf23c 04c07e8a07eac5672813ab4c249ae370 { 'aliquot_tag': 'ALQ_66683614', 'gdc_sample_type': 'Primary Tumor' } -C3N-01489.RNA-Seq.genomic.A.hg38 C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 4e0e8b07-e9c6-44cd-bff4-f813fc45a3f5.rna_seq.genomic.gdc_realn.bam 8467021079 BAM genomic harmonized CPTAC3 4f9801b6-db3a-40f4-96a2-94d6592ff13c b54a0cf5cde565bb1f8ad8242d01cb05 { 'aliquot_tag': 'ALQ_a398db15', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01489.RNA-Seq.genomic.T.hg38 C3N-01489 LUAD RNA-Seq tumor CPT0105940006 c7b3d94d-9e9e-47d3-90e7-fc86ef5d5975.rna_seq.genomic.gdc_realn.bam 9842058607 BAM genomic harmonized CPTAC3 665f7e3c-542c-4725-95d9-7a5cc425fb99 28887a13797a2b8496b4a7560acb9030 { 'aliquot_tag': 'ALQ_66683614', 'gdc_sample_type': 'Primary Tumor' } -C3N-01489.RNA-Seq.R1_L007.A C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L007_R1_001.fastq.gz 3950047611 FASTQ R1_L007 unaligned CPTAC3 5a005f8b-888a-457a-adbf-60aa21276621 42d9406da3be37c5dbe358ba3f39090a { 'aliquot_tag': 'ALQ_a398db15', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01489.RNA-Seq.R1_L007.T C3N-01489 LUAD RNA-Seq tumor CPT0105940006 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L007_R1_001.fastq.gz 3710045856 FASTQ R1_L007 unaligned CPTAC3 d568a0a1-fc3c-4523-9b73-a8f5d096a49b 4178b6c778c48555d670b0cd1fb90029 { 'aliquot_tag': 'ALQ_66683614', 'gdc_sample_type': 'Primary Tumor' } -C3N-01489.RNA-Seq.R2_L007.A C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L007_R2_001.fastq.gz 4342548898 FASTQ R2_L007 unaligned CPTAC3 48895b66-ca1f-4f49-905c-4ffcaa748766 4706371812d5b1d82f1c2c7bb1f4b351 { 'aliquot_tag': 'ALQ_a398db15', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01489.RNA-Seq.R2_L007.T C3N-01489 LUAD RNA-Seq tumor CPT0105940006 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L007_R2_001.fastq.gz 4288829996 FASTQ R2_L007 unaligned CPTAC3 27e3faae-2c1c-418b-87ed-d5f4edfe4384 527a84aa2633450116dd76c74cc6fca6 { 'aliquot_tag': 'ALQ_66683614', 'gdc_sample_type': 'Primary Tumor' } +C3N-01489.RNA-Seq.genomic.A.hg38 C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 4e0e8b07-e9c6-44cd-bff4-f813fc45a3f5.rna_seq.genomic.gdc_realn.bam 8467021079 BAM genomic harmonized CPTAC3 bf010ff5-6787-46fa-9885-a140be5eb8ac b54a0cf5cde565bb1f8ad8242d01cb05 { 'aliquot_tag': 'ALQ_a398db15', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01489.RNA-Seq.genomic.T.hg38 C3N-01489 LUAD RNA-Seq tumor CPT0105940006 c7b3d94d-9e9e-47d3-90e7-fc86ef5d5975.rna_seq.genomic.gdc_realn.bam 9842058607 BAM genomic harmonized CPTAC3 e288582f-3a96-4c2f-8b25-1818c39d8e96 28887a13797a2b8496b4a7560acb9030 { 'aliquot_tag': 'ALQ_66683614', 'gdc_sample_type': 'Primary Tumor' } +C3N-01489.RNA-Seq.R1_L007.A C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L007_R1_001.fastq.gz 3950047611 FASTQ R1_L007 unaligned CPTAC3 5a005f8b-888a-457a-adbf-60aa21276621 42d9406da3be37c5dbe358ba3f39090a { 'aliquot_tag': 'ALQ_a398db15', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01489.RNA-Seq.R1_L007.T C3N-01489 LUAD RNA-Seq tumor CPT0105940006 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L007_R1_001.fastq.gz 3710045856 FASTQ R1_L007 unaligned CPTAC3 d568a0a1-fc3c-4523-9b73-a8f5d096a49b 4178b6c778c48555d670b0cd1fb90029 { 'aliquot_tag': 'ALQ_66683614', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01489.RNA-Seq.R2_L007.A C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTTGA_S2_L007_R2_001.fastq.gz 4342548898 FASTQ R2_L007 unaligned CPTAC3 48895b66-ca1f-4f49-905c-4ffcaa748766 4706371812d5b1d82f1c2c7bb1f4b351 { 'aliquot_tag': 'ALQ_a398db15', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01489.RNA-Seq.R2_L007.T C3N-01489 LUAD RNA-Seq tumor CPT0105940006 171109_UNC31-K00269_0091_BHMFGTBBXX_GGCTAC_S1_L007_R2_001.fastq.gz 4288829996 FASTQ R2_L007 unaligned CPTAC3 27e3faae-2c1c-418b-87ed-d5f4edfe4384 527a84aa2633450116dd76c74cc6fca6 { 'aliquot_tag': 'ALQ_66683614', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01489.RNA-Seq.transcriptome.A.hg38 C3N-01489 LUAD RNA-Seq tissue_normal CPT0105980006 4e0e8b07-e9c6-44cd-bff4-f813fc45a3f5.rna_seq.transcriptome.gdc_realn.bam 10013477633 BAM transcriptome harmonized CPTAC3 f3718ead-6aa7-436b-9f20-f1cbecbe0fc0 b27e937201bdeb274ae23b68b6d8cbbd { 'aliquot_tag': 'ALQ_a398db15', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01489.RNA-Seq.transcriptome.T.hg38 C3N-01489 LUAD RNA-Seq tumor CPT0105940006 c7b3d94d-9e9e-47d3-90e7-fc86ef5d5975.rna_seq.transcriptome.gdc_realn.bam 9834031061 BAM transcriptome harmonized CPTAC3 b52c3bb8-4b73-4c04-b6be-28a4d48546e6 411304ca0a14e19c7ffd6bb38467a885 { 'aliquot_tag': 'ALQ_66683614', 'gdc_sample_type': 'Primary Tumor' } C3N-01489.WGS.A C3N-01489 LUAD WGS tissue_normal CPT0105980009 CPT0105980009.WholeGenome.RP-1303.bam 68757317421 BAM aligned CPTAC3 1704dcf4-482a-498d-8d49-b90c3f798a61 4112f14493d565a5d9f47429cc7449ce { 'aliquot_tag': 'ALQ_3327c684', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -25981,8 +27926,8 @@ C3N-01502.miRNA-Seq.T C3N-01502 PDA miRNA-Seq tumor CPT0065570006 181108_UNC31-K C3N-01502.miRNA-Seq.T.hg38 C3N-01502 PDA miRNA-Seq tumor CPT0065570006 a466c026-74d9-46b7-8163-46fabab9b1f9_mirnaseq_gdc_realn.bam 247185270 BAM harmonized CPTAC3 3085592d-cd8d-405e-81ef-b321df20e6eb 0e0ed0a4f10629229753eb6ec08c563e { 'aliquot_tag': 'ALQ_871e917b', 'gdc_sample_type': 'Primary Tumor' } C3N-01502.RNA-Seq.chimeric.T.hg38 C3N-01502 PDA RNA-Seq tumor CPT0065570006 199d26ca-dbe6-4c5a-a286-5d69292dbd80.rna_seq.chimeric.gdc_realn.bam 25542244 BAM chimeric harmonized CPTAC3 29627747-eed3-4fd7-bfd1-01ca64e7994b 8c7de779f9900b8268ea31e7a10e7103 { 'aliquot_tag': 'ALQ_871e917b', 'gdc_sample_type': 'Primary Tumor' } C3N-01502.RNA-Seq.genomic.T.hg38 C3N-01502 PDA RNA-Seq tumor CPT0065570006 199d26ca-dbe6-4c5a-a286-5d69292dbd80.rna_seq.genomic.gdc_realn.bam 9849420953 BAM genomic harmonized CPTAC3 b963d3ea-37c6-495f-9420-629a9aba1fb0 72e375cf6800fb570b6c16945ebb8bba { 'aliquot_tag': 'ALQ_871e917b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01502.RNA-Seq.R1_L001.T C3N-01502 PDA RNA-Seq tumor CPT0065570006 170828_UNC31-K00269_0077_AHLF33BBXX_GTGAAA_S4_L001_R1_001.fastq.gz 3950291517 FASTQ R1_L001 unaligned CPTAC3 1160e253-5400-4f77-8e84-f6dfe6176fad d1dbe2f221a28d85af4d144eb716070b { 'aliquot_tag': 'ALQ_871e917b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01502.RNA-Seq.R2_L001.T C3N-01502 PDA RNA-Seq tumor CPT0065570006 170828_UNC31-K00269_0077_AHLF33BBXX_GTGAAA_S4_L001_R2_001.fastq.gz 4075095135 FASTQ R2_L001 unaligned CPTAC3 0e8256ed-01e1-4440-88c0-68a96bb0e4a4 4fadbfe5aad6ab4221e86dfaf2768f51 { 'aliquot_tag': 'ALQ_871e917b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01502.RNA-Seq.R1_L001.T C3N-01502 PDA RNA-Seq tumor CPT0065570006 170828_UNC31-K00269_0077_AHLF33BBXX_GTGAAA_S4_L001_R1_001.fastq.gz 3950291517 FASTQ R1_L001 unaligned CPTAC3 1160e253-5400-4f77-8e84-f6dfe6176fad d1dbe2f221a28d85af4d144eb716070b { 'aliquot_tag': 'ALQ_871e917b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01502.RNA-Seq.R2_L001.T C3N-01502 PDA RNA-Seq tumor CPT0065570006 170828_UNC31-K00269_0077_AHLF33BBXX_GTGAAA_S4_L001_R2_001.fastq.gz 4075095135 FASTQ R2_L001 unaligned CPTAC3 0e8256ed-01e1-4440-88c0-68a96bb0e4a4 4fadbfe5aad6ab4221e86dfaf2768f51 { 'aliquot_tag': 'ALQ_871e917b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-01502.RNA-Seq.transcriptome.T.hg38 C3N-01502 PDA RNA-Seq tumor CPT0065570006 199d26ca-dbe6-4c5a-a286-5d69292dbd80.rna_seq.transcriptome.gdc_realn.bam 9841173061 BAM transcriptome harmonized CPTAC3 f8c981dd-8b5d-48d8-b76d-5b81d9e1261d 5bf5173bd9f7b467a5fafa1d6ec7dfc3 { 'aliquot_tag': 'ALQ_871e917b', 'gdc_sample_type': 'Primary Tumor' } C3N-01502.WGS.N C3N-01502 PDA WGS blood_normal CPT0070700002 CPT0070700002.WholeGenome.RP-1303.bam 88534643472 BAM aligned CPTAC3 eec33d57-ffdc-4f56-9aa4-ce8276b7e49d 719b7b9b87a7fc4fc7c7271a71c8fb57 { 'aliquot_tag': 'ALQ_e1090740', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01502.WGS.N.hg38 C3N-01502 PDA WGS blood_normal CPT0070700002 90fad112-7ec0-43d1-9293-731150d95deb_gdc_realn.bam 132609636824 BAM harmonized CPTAC3 073dcaea-3c85-4618-b6a5-30fc9397ff6a 0726c5a5f38c354ef3ab4c40250925c7 { 'aliquot_tag': 'ALQ_e1090740', 'gdc_sample_type': 'Blood Derived Normal' } @@ -25995,9 +27940,9 @@ C3N-01505.MethArray.Red.T C3N-01505 GBM Methylation Array tumor CPT0089150009 20 C3N-01505.miRNA-Seq.T C3N-01505 GBM miRNA-Seq tumor CPT0089150006 180724_UNC32-K00270_0106_BHWK3MBBXX_ATTCCT_S3_L007_R1_001.unaln.bam 202941163 BAM unaligned CPTAC3 01ac63d2-73e4-4a02-80cf-2c9b24969b03 d6ae1c47a0c0237e8cf5566852da9a39 { 'aliquot_tag': 'ALQ_b465f84b', 'gdc_sample_type': 'Primary Tumor' } C3N-01505.miRNA-Seq.T.hg38 C3N-01505 GBM miRNA-Seq tumor CPT0089150006 1bb7c639-e130-42b3-a721-8ac016f7e5ff_mirnaseq_gdc_realn.bam 227043971 BAM harmonized CPTAC3 0ef843df-001f-4f98-8696-2c939da64e5f 7314c3eed77ddaf01a9bb194a76141ef { 'aliquot_tag': 'ALQ_b465f84b', 'gdc_sample_type': 'Primary Tumor' } C3N-01505.RNA-Seq.chimeric.T.hg38 C3N-01505 GBM RNA-Seq tumor CPT0089150006 b03c6a4e-0ab1-4763-979f-d9f65f42927b.rna_seq.chimeric.gdc_realn.bam 43930093 BAM chimeric harmonized CPTAC3 e382185f-f57d-4ef2-9342-614468ee0a4c d60c0884bd25486ec881a8012a62b290 { 'aliquot_tag': 'ALQ_b465f84b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01505.RNA-Seq.genomic.T.hg38 C3N-01505 GBM RNA-Seq tumor CPT0089150006 b03c6a4e-0ab1-4763-979f-d9f65f42927b.rna_seq.genomic.gdc_realn.bam 9301401147 BAM genomic harmonized CPTAC3 52826d0c-9062-41f5-8336-347244f65c9d c5d8c60e5401be0cd975248a7f53f081 { 'aliquot_tag': 'ALQ_b465f84b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01505.RNA-Seq.R1_L007.T C3N-01505 GBM RNA-Seq tumor CPT0089150006 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L007_R1_001.fastq.gz 4394536669 FASTQ R1_L007 unaligned CPTAC3 ae912b64-4bdb-4a13-8b73-87bb12c0b91d ab089db04ace302e735640050952ce3e { 'aliquot_tag': 'ALQ_b465f84b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01505.RNA-Seq.R2_L007.T C3N-01505 GBM RNA-Seq tumor CPT0089150006 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L007_R2_001.fastq.gz 4755808924 FASTQ R2_L007 unaligned CPTAC3 e6967824-e7b5-4e93-b0d9-d83a178cb330 e9f33dfd2766846203e253420985c5ed { 'aliquot_tag': 'ALQ_b465f84b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01505.RNA-Seq.genomic.T.hg38 C3N-01505 GBM RNA-Seq tumor CPT0089150006 b03c6a4e-0ab1-4763-979f-d9f65f42927b.rna_seq.genomic.gdc_realn.bam 9301401147 BAM genomic harmonized CPTAC3 c92e8dd5-e49c-49de-96cf-e1f2c7a3d7a2 c5d8c60e5401be0cd975248a7f53f081 { 'aliquot_tag': 'ALQ_b465f84b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01505.RNA-Seq.R1_L007.T C3N-01505 GBM RNA-Seq tumor CPT0089150006 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L007_R1_001.fastq.gz 4394536669 FASTQ R1_L007 unaligned CPTAC3 ae912b64-4bdb-4a13-8b73-87bb12c0b91d ab089db04ace302e735640050952ce3e { 'aliquot_tag': 'ALQ_b465f84b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01505.RNA-Seq.R2_L007.T C3N-01505 GBM RNA-Seq tumor CPT0089150006 171129_UNC32-K00270_0066_AHM25VBBXX_TTAGGC_S8_L007_R2_001.fastq.gz 4755808924 FASTQ R2_L007 unaligned CPTAC3 e6967824-e7b5-4e93-b0d9-d83a178cb330 e9f33dfd2766846203e253420985c5ed { 'aliquot_tag': 'ALQ_b465f84b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01505.RNA-Seq.transcriptome.T.hg38 C3N-01505 GBM RNA-Seq tumor CPT0089150006 b03c6a4e-0ab1-4763-979f-d9f65f42927b.rna_seq.transcriptome.gdc_realn.bam 11263981848 BAM transcriptome harmonized CPTAC3 86228e13-3955-4851-891c-0c688d41c51b 481e8f849825f41a2727adcb0985982a { 'aliquot_tag': 'ALQ_b465f84b', 'gdc_sample_type': 'Primary Tumor' } C3N-01505.WGS.N C3N-01505 GBM WGS blood_normal CPT0091300002 CPT0091300002.WholeGenome.RP-1303.bam 70461521289 BAM aligned CPTAC3 2ef1a4d2-22e3-439a-ac88-8d8d98417c92 b4a700ebad78478478effa925eb6f6df { 'aliquot_tag': 'ALQ_c9655cd0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01505.WGS.N.hg38 C3N-01505 GBM WGS blood_normal CPT0091300002 087bdb48-d63e-46d0-96d1-1915276d5fb6_wgs_gdc_realn.bam 103578718945 BAM harmonized CPTAC3 4c49660d-60b1-40a4-9669-3aabc6c5ced2 a7e4e4a18f9aa6a2809d5e19466814ab { 'aliquot_tag': 'ALQ_c9655cd0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26012,12 +27957,15 @@ C3N-01510.MethArray.Red.T C3N-01510 UCEC Methylation Array tumor CPT0079650009 2 C3N-01510.miRNA-Seq.T C3N-01510 UCEC miRNA-Seq tumor CPT0079650006 181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L001_R1_001.unaln.bam 173577245 BAM unaligned CPTAC3 f6b7de9b-f86c-4741-a0ac-9a382df59c0a 4c862c2e18efebda97e1b7c7658e3aed { 'aliquot_tag': 'ALQ_7040da5f', 'gdc_sample_type': 'Primary Tumor' } C3N-01510.miRNA-Seq.T.hg38 C3N-01510 UCEC miRNA-Seq tumor CPT0079650006 b993c95c-2d97-4c3f-a7ee-4a655883192f_mirnaseq_gdc_realn.bam 189496117 BAM harmonized CPTAC3 56c3bcd0-a695-4d1c-a761-90353e1c8490 899fceb5666cd87bcf58ca05b15ec994 { 'aliquot_tag': 'ALQ_7040da5f', 'gdc_sample_type': 'Primary Tumor' } C3N-01510.RNA-Seq.chimeric.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079650006 42d7be38-8a03-49c6-871c-032d65c8b167.rna_seq.chimeric.gdc_realn.bam 44616872 BAM chimeric harmonized CPTAC3 bf78d448-b106-4727-8fac-2d769b7bbf65 524f25d56788e2154874fd152bc9508c { 'aliquot_tag': 'ALQ_7040da5f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01510.RNA-Seq.genomic.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079650006 42d7be38-8a03-49c6-871c-032d65c8b167.rna_seq.genomic.gdc_realn.bam 8262375143 BAM genomic harmonized CPTAC3 d2f2ea9a-a2ac-444d-bb61-035be8a73ea2 75aa627c103f5f0513107a88db9ef703 { 'aliquot_tag': 'ALQ_7040da5f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01510.RNA-Seq.R1_L004.T C3N-01510 UCEC RNA-Seq tumor CPT0079650006 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3423529925 FASTQ R1_L004 unaligned CPTAC3 9c598e26-c32b-4405-af2a-c560941fb81a c811a1f64c9a773f06ee5ada28af7217 { 'aliquot_tag': 'ALQ_7040da5f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01510.RNA-Seq.R1_.T C3N-01510 UCEC RNA-Seq tumor CPT0079700001 20210714_P1_A4_WB7988_plate1_S4_R1_001.fastq.gz 3792530392 FASTQ R1_ unaligned CPTAC3 e197a317-1251-4521-ad3e-f646cb1983c7 1f2d901515e77fd7b10a88faab5acfb0 { 'aliquot_tag': 'ALQ_ed981329', 'gdc_sample_type': 'Primary Tumor' } -C3N-01510.RNA-Seq.R2_L004.T C3N-01510 UCEC RNA-Seq tumor CPT0079650006 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 3668937274 FASTQ R2_L004 unaligned CPTAC3 086afb47-3e44-4075-900f-c9efeb622959 2e5a64ce52b394eb69ba08e9f4ba885e { 'aliquot_tag': 'ALQ_7040da5f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01510.RNA-Seq.R2_.T C3N-01510 UCEC RNA-Seq tumor CPT0079700001 20210714_P1_A4_WB7988_plate1_S4_R2_001.fastq.gz 3878269734 FASTQ R2_ unaligned CPTAC3 ec386050-d52d-40b8-9693-29616b999bd9 18bd60355f70537aabe783ef29f10aba { 'aliquot_tag': 'ALQ_ed981329', 'gdc_sample_type': 'Primary Tumor' } +C3N-01510.RNA-Seq.chimeric.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079700001 8847424a-ca98-4012-afe0-2d6bdf223d2f.rna_seq.chimeric.gdc_realn.bam 59416409 BAM chimeric harmonized CPTAC3 f8d32784-24fd-423e-9ace-34fe0491a1dd 115d4ae4d80646a52b4dcbf341f37818 { 'aliquot_tag': 'ALQ_ed981329', 'gdc_sample_type': 'Primary Tumor' } +C3N-01510.RNA-Seq.genomic.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079650006 42d7be38-8a03-49c6-871c-032d65c8b167.rna_seq.genomic.gdc_realn.bam 8262375143 BAM genomic harmonized CPTAC3 8bce61e9-3174-491d-b3d5-eba824b1f196 75aa627c103f5f0513107a88db9ef703 { 'aliquot_tag': 'ALQ_7040da5f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01510.RNA-Seq.genomic.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079700001 8847424a-ca98-4012-afe0-2d6bdf223d2f.rna_seq.genomic.gdc_realn.bam 6800448704 BAM genomic harmonized CPTAC3 7a248e09-4ce3-4615-bf20-97e09ac52005 25fc9ec1b56e736e9fd3a5d71ef0f7df { 'aliquot_tag': 'ALQ_ed981329', 'gdc_sample_type': 'Primary Tumor' } +C3N-01510.RNA-Seq.R1_L004.T C3N-01510 UCEC RNA-Seq tumor CPT0079650006 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTCAA_S15_L004_R1_001.fastq.gz 3423529925 FASTQ R1_L004 unaligned CPTAC3 9c598e26-c32b-4405-af2a-c560941fb81a c811a1f64c9a773f06ee5ada28af7217 { 'aliquot_tag': 'ALQ_7040da5f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01510.RNA-Seq.R2_L004.T C3N-01510 UCEC RNA-Seq tumor CPT0079650006 170906_UNC32-K00270_0058_BHLJ7FBBXX_AGTCAA_S15_L004_R2_001.fastq.gz 3668937274 FASTQ R2_L004 unaligned CPTAC3 086afb47-3e44-4075-900f-c9efeb622959 2e5a64ce52b394eb69ba08e9f4ba885e { 'aliquot_tag': 'ALQ_7040da5f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01510.RNA-Seq.T C3N-01510 UCEC RNA-Seq tumor CPT0079700001 20210714_P1_A4_WB7988_plate1_S4_R1_001.fastq.gz 3792530392 FASTQ unaligned CPTAC3 e197a317-1251-4521-ad3e-f646cb1983c7 1f2d901515e77fd7b10a88faab5acfb0 +C3N-01510.RNA-Seq.T C3N-01510 UCEC RNA-Seq tumor CPT0079700001 20210714_P1_A4_WB7988_plate1_S4_R2_001.fastq.gz 3878269734 FASTQ unaligned CPTAC3 ec386050-d52d-40b8-9693-29616b999bd9 18bd60355f70537aabe783ef29f10aba C3N-01510.RNA-Seq.transcriptome.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079650006 42d7be38-8a03-49c6-871c-032d65c8b167.rna_seq.transcriptome.gdc_realn.bam 7734263571 BAM transcriptome harmonized CPTAC3 2e40c6e6-4733-46d1-8417-59aef23dde65 cf77a60870109ffc983f0abf9d5577c3 { 'aliquot_tag': 'ALQ_7040da5f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01510.RNA-Seq.transcriptome.T.hg38 C3N-01510 UCEC RNA-Seq tumor CPT0079700001 8847424a-ca98-4012-afe0-2d6bdf223d2f.rna_seq.transcriptome.gdc_realn.bam 4112821703 BAM transcriptome harmonized CPTAC3 9866e2e7-5d65-43c2-8cbe-416f33d7712b ad754bda54ed198e49d5e399215d3062 { 'aliquot_tag': 'ALQ_ed981329', 'gdc_sample_type': 'Primary Tumor' } C3N-01510.WGS.N C3N-01510 UCEC WGS blood_normal CPT0080750002 CPT0080750002.WholeGenome.RP-1303.bam 61495740779 BAM aligned CPTAC3 9f2d98f1-6a52-449d-a43d-ef8945c07061 993e256019032b691a0b8ceb40c4d86d { 'aliquot_tag': 'ALQ_f0c99a9c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01510.WGS.N.hg38 C3N-01510 UCEC WGS blood_normal CPT0080750002 f8e5df28-e72a-43d1-867f-2774935b9d1b_gdc_realn.bam 91153684077 BAM harmonized CPTAC3 5ef81d6b-2d4a-4ed8-960b-eea9cf8c3598 c4c252b334e351b5b427fb356168d591 { 'aliquot_tag': 'ALQ_f0c99a9c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01510.WGS.T C3N-01510 UCEC WGS tumor CPT0079650009 CPT0079650009.WholeGenome.RP-1303.bam 61691453549 BAM aligned CPTAC3 64dde8cc-48e5-47b7-b9e8-e98451894320 b306037917e255e761c1c971dbe7ce2a { 'aliquot_tag': 'ALQ_e0ffc7ce', 'gdc_sample_type': 'Primary Tumor' } @@ -26035,9 +27983,9 @@ C3N-01515.MethArray.Red.T C3N-01515 GBM Methylation Array tumor CPT0079790009 20 C3N-01515.miRNA-Seq.T C3N-01515 GBM miRNA-Seq tumor CPT0079790006 180724_UNC32-K00270_0106_BHWK3MBBXX_TTAGGC_S27_L008_R1_001.unaln.bam 175886263 BAM unaligned CPTAC3 a9ce2cb9-4db9-4ef2-ac0f-b6cc7a5cbc64 34a56f4f8b39596a0b2d43562592bdca { 'aliquot_tag': 'ALQ_7eece4fb', 'gdc_sample_type': 'Primary Tumor' } C3N-01515.miRNA-Seq.T.hg38 C3N-01515 GBM miRNA-Seq tumor CPT0079790006 66ac1084-4e2c-4376-a020-03eb4ac0035c_mirnaseq_gdc_realn.bam 194398504 BAM harmonized CPTAC3 4ff624d5-d77a-4378-ac8b-df65a8a4d732 978b573470779029d23e995f79dde381 { 'aliquot_tag': 'ALQ_7eece4fb', 'gdc_sample_type': 'Primary Tumor' } C3N-01515.RNA-Seq.chimeric.T.hg38 C3N-01515 GBM RNA-Seq tumor CPT0079790006 8413be23-0ccf-476c-b371-c150d6d0a720.rna_seq.chimeric.gdc_realn.bam 44487877 BAM chimeric harmonized CPTAC3 b60d0ba2-0ae6-4726-81df-e851f58b4bd5 8fc6d9c74536c4e69a8f4bcf0f606aaa { 'aliquot_tag': 'ALQ_7eece4fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01515.RNA-Seq.genomic.T.hg38 C3N-01515 GBM RNA-Seq tumor CPT0079790006 8413be23-0ccf-476c-b371-c150d6d0a720.rna_seq.genomic.gdc_realn.bam 8690514560 BAM genomic harmonized CPTAC3 4ee03702-725e-4d7e-8702-58ce6bc36f36 10646a4e5ef3822f7bbda209ca07baf4 { 'aliquot_tag': 'ALQ_7eece4fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01515.RNA-Seq.R1_L005.T C3N-01515 GBM RNA-Seq tumor CPT0079790006 171116_UNC31-K00269_0093_BHMFKJBBXX_TTAGGC_S16_L005_R1_001.fastq.gz 3931183389 FASTQ R1_L005 unaligned CPTAC3 4af57b23-c496-487d-868a-0c09c5e20ea4 05c5f57ec6e77ddd76aa065e78644ded { 'aliquot_tag': 'ALQ_7eece4fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01515.RNA-Seq.R2_L005.T C3N-01515 GBM RNA-Seq tumor CPT0079790006 171116_UNC31-K00269_0093_BHMFKJBBXX_TTAGGC_S16_L005_R2_001.fastq.gz 4328111545 FASTQ R2_L005 unaligned CPTAC3 da0a144a-f03c-46e9-b35c-14b0b1a9a40c caa2d2caddf4c1c504fd1d33fe897c44 { 'aliquot_tag': 'ALQ_7eece4fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-01515.RNA-Seq.genomic.T.hg38 C3N-01515 GBM RNA-Seq tumor CPT0079790006 8413be23-0ccf-476c-b371-c150d6d0a720.rna_seq.genomic.gdc_realn.bam 8690514560 BAM genomic harmonized CPTAC3 715ffbe5-efd3-4f62-9fb8-d4a13367ae40 10646a4e5ef3822f7bbda209ca07baf4 { 'aliquot_tag': 'ALQ_7eece4fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-01515.RNA-Seq.R1_L005.T C3N-01515 GBM RNA-Seq tumor CPT0079790006 171116_UNC31-K00269_0093_BHMFKJBBXX_TTAGGC_S16_L005_R1_001.fastq.gz 3931183389 FASTQ R1_L005 unaligned CPTAC3 4af57b23-c496-487d-868a-0c09c5e20ea4 05c5f57ec6e77ddd76aa065e78644ded { 'aliquot_tag': 'ALQ_7eece4fb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01515.RNA-Seq.R2_L005.T C3N-01515 GBM RNA-Seq tumor CPT0079790006 171116_UNC31-K00269_0093_BHMFKJBBXX_TTAGGC_S16_L005_R2_001.fastq.gz 4328111545 FASTQ R2_L005 unaligned CPTAC3 da0a144a-f03c-46e9-b35c-14b0b1a9a40c caa2d2caddf4c1c504fd1d33fe897c44 { 'aliquot_tag': 'ALQ_7eece4fb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-01515.RNA-Seq.transcriptome.T.hg38 C3N-01515 GBM RNA-Seq tumor CPT0079790006 8413be23-0ccf-476c-b371-c150d6d0a720.rna_seq.transcriptome.gdc_realn.bam 10389811823 BAM transcriptome harmonized CPTAC3 82496b41-175d-4743-91e7-3065130f47ef 2a355f81e4d93840095875f67f07da0e { 'aliquot_tag': 'ALQ_7eece4fb', 'gdc_sample_type': 'Primary Tumor' } C3N-01515.WGS.T C3N-01515 GBM WGS tumor CPT0079790009 CPT0079790009.WholeGenome.RP-1303.bam 63947622118 BAM aligned CPTAC3 26a06e1a-93b6-4f62-b833-c306df9a077c 7cc5fc877f9269f59fa0bbbbb0a73214 { 'aliquot_tag': 'ALQ_ee53f96a', 'gdc_sample_type': 'Primary Tumor' } C3N-01515.WGS.T.hg38 C3N-01515 GBM WGS tumor CPT0079790009 d4205a17-5d31-4f86-9a43-4631df1263ab_wgs_gdc_realn.bam 94688322512 BAM harmonized CPTAC3 0a677c0b-d4b6-48c3-8cb1-f0450487c8e1 4c90eb6f9f960eed16b323e275fe1740 { 'aliquot_tag': 'ALQ_ee53f96a', 'gdc_sample_type': 'Primary Tumor' } @@ -26048,9 +27996,9 @@ C3N-01517.MethArray.Red.T C3N-01517 GBM Methylation Array tumor CPT0167530006 20 C3N-01517.miRNA-Seq.T C3N-01517 GBM miRNA-Seq tumor CPT0167530009 181119_UNC31-K00269_0165_AH27WCBBXY_GTCCGC_S42_L002_R1_001.unaln.bam 217616097 BAM unaligned CPTAC3 17498b69-39c5-4e7c-b23a-bdd65eb3ac62 c8e81bd30ed578a679ca307c7633f1bd { 'aliquot_tag': 'ALQ_62c52f40', 'gdc_sample_type': 'Primary Tumor' } C3N-01517.miRNA-Seq.T.hg38 C3N-01517 GBM miRNA-Seq tumor CPT0167530009 8812f0df-eeda-4fbb-a963-5e919b0383ba_mirnaseq_gdc_realn.bam 244342555 BAM harmonized CPTAC3 be32ca8b-8dc5-46d1-a4b6-1742df099b7a 9d2aff85594813da1548aeea96e20c6e { 'aliquot_tag': 'ALQ_62c52f40', 'gdc_sample_type': 'Primary Tumor' } C3N-01517.RNA-Seq.chimeric.T.hg38 C3N-01517 GBM RNA-Seq tumor CPT0167530009 2cccc6c8-9dac-4407-b390-e643b614fb28.rna_seq.chimeric.gdc_realn.bam 27421115 BAM chimeric harmonized CPTAC3 5acc91fd-6eed-4168-b4a5-4fa758d4d66c ba820a18cfc9362881d9c24c062337ef { 'aliquot_tag': 'ALQ_62c52f40', 'gdc_sample_type': 'Primary Tumor' } -C3N-01517.RNA-Seq.genomic.T.hg38 C3N-01517 GBM RNA-Seq tumor CPT0167530009 2cccc6c8-9dac-4407-b390-e643b614fb28.rna_seq.genomic.gdc_realn.bam 7634364751 BAM genomic harmonized CPTAC3 ad6a9556-1150-481b-bddd-cf521e26ce1f 4043d2d047af303b3f7b0b41b9cbb0ee { 'aliquot_tag': 'ALQ_62c52f40', 'gdc_sample_type': 'Primary Tumor' } -C3N-01517.RNA-Seq.R1_L007.T C3N-01517 GBM RNA-Seq tumor CPT0167530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3618364620 FASTQ R1_L007 unaligned CPTAC3 6a90c04b-6626-4980-82b7-ecbd0efbbedf a27195b5588e5805cb308362a5ed2ef5 { 'aliquot_tag': 'ALQ_62c52f40', 'gdc_sample_type': 'Primary Tumor' } -C3N-01517.RNA-Seq.R2_L007.T C3N-01517 GBM RNA-Seq tumor CPT0167530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 3779835090 FASTQ R2_L007 unaligned CPTAC3 0cad2950-450a-41ad-9c84-42c8a152b18d 6675d94e2196c435392b2c0d067880ce { 'aliquot_tag': 'ALQ_62c52f40', 'gdc_sample_type': 'Primary Tumor' } +C3N-01517.RNA-Seq.genomic.T.hg38 C3N-01517 GBM RNA-Seq tumor CPT0167530009 2cccc6c8-9dac-4407-b390-e643b614fb28.rna_seq.genomic.gdc_realn.bam 7634364751 BAM genomic harmonized CPTAC3 fe11a9d7-7d78-44b5-b36c-d7d789f752bc 4043d2d047af303b3f7b0b41b9cbb0ee { 'aliquot_tag': 'ALQ_62c52f40', 'gdc_sample_type': 'Primary Tumor' } +C3N-01517.RNA-Seq.R1_L007.T C3N-01517 GBM RNA-Seq tumor CPT0167530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3618364620 FASTQ R1_L007 unaligned CPTAC3 6a90c04b-6626-4980-82b7-ecbd0efbbedf a27195b5588e5805cb308362a5ed2ef5 { 'aliquot_tag': 'ALQ_62c52f40', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01517.RNA-Seq.R2_L007.T C3N-01517 GBM RNA-Seq tumor CPT0167530009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 3779835090 FASTQ R2_L007 unaligned CPTAC3 0cad2950-450a-41ad-9c84-42c8a152b18d 6675d94e2196c435392b2c0d067880ce { 'aliquot_tag': 'ALQ_62c52f40', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01517.RNA-Seq.transcriptome.T.hg38 C3N-01517 GBM RNA-Seq tumor CPT0167530009 2cccc6c8-9dac-4407-b390-e643b614fb28.rna_seq.transcriptome.gdc_realn.bam 9580961058 BAM transcriptome harmonized CPTAC3 e7c3da61-a6bd-4c23-8dfd-3d3981462a1a a3bf77a34ec0e539e754c7f912ac96cf { 'aliquot_tag': 'ALQ_62c52f40', 'gdc_sample_type': 'Primary Tumor' } C3N-01517.WGS.N C3N-01517 GBM WGS blood_normal CPT0167590002 CPT0167590002.WholeGenome.RP-1303.bam 66236518222 BAM aligned CPTAC3 8a5f9098-6a49-4b60-be2d-2e2b86d1f208 208cbfcf3367a73f7992801bf6a64f73 { 'aliquot_tag': 'ALQ_bfa7ee69', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01517.WGS.N.hg38 C3N-01517 GBM WGS blood_normal CPT0167590002 c5532f02-56c1-4f58-8b21-238146948cf5_wgs_gdc_realn.bam 95893216700 BAM harmonized CPTAC3 99114da3-f483-48a9-bdad-c734fa942f52 5440d8a6d29eea51e7a32a7ed9b0f51f { 'aliquot_tag': 'ALQ_bfa7ee69', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26065,9 +28013,9 @@ C3N-01518.MethArray.Red.T C3N-01518 GBM Methylation Array tumor CPT0167640006 20 C3N-01518.miRNA-Seq.T C3N-01518 GBM miRNA-Seq tumor CPT0167640009 181119_UNC31-K00269_0165_AH27WCBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 264705981 BAM unaligned CPTAC3 4ecbfeb6-6b0c-44ca-b20b-b610620822e1 e522e9a3703173f130c3722b0deddb7b { 'aliquot_tag': 'ALQ_567181fe', 'gdc_sample_type': 'Primary Tumor' } C3N-01518.miRNA-Seq.T.hg38 C3N-01518 GBM miRNA-Seq tumor CPT0167640009 02eb896a-7db9-4cf5-a8f4-b685afe026df_mirnaseq_gdc_realn.bam 310341753 BAM harmonized CPTAC3 3a8bb080-2309-499b-b840-40e33c8c291c 5d7447568d51fe32a68a28b48b605498 { 'aliquot_tag': 'ALQ_567181fe', 'gdc_sample_type': 'Primary Tumor' } C3N-01518.RNA-Seq.chimeric.T.hg38 C3N-01518 GBM RNA-Seq tumor CPT0167640009 622926d3-62e6-48f3-b4fa-5f8eb73ec25d.rna_seq.chimeric.gdc_realn.bam 35650481 BAM chimeric harmonized CPTAC3 efeb45fd-822c-46ee-8b6e-d31fc7a5c9e9 a858e7e6e479de1a502a84aabf50f8d6 { 'aliquot_tag': 'ALQ_567181fe', 'gdc_sample_type': 'Primary Tumor' } -C3N-01518.RNA-Seq.genomic.T.hg38 C3N-01518 GBM RNA-Seq tumor CPT0167640009 622926d3-62e6-48f3-b4fa-5f8eb73ec25d.rna_seq.genomic.gdc_realn.bam 9338322289 BAM genomic harmonized CPTAC3 45c65dbf-c19c-44fc-8561-4213f80d1a0c e70432537fd99cc32949e9fee9643250 { 'aliquot_tag': 'ALQ_567181fe', 'gdc_sample_type': 'Primary Tumor' } -C3N-01518.RNA-Seq.R1_L007.T C3N-01518 GBM RNA-Seq tumor CPT0167640009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4361775821 FASTQ R1_L007 unaligned CPTAC3 b2aafa3a-4775-467c-80bd-ab1e0fb066cd eddf0e5174a0b270b486da155274fabf { 'aliquot_tag': 'ALQ_567181fe', 'gdc_sample_type': 'Primary Tumor' } -C3N-01518.RNA-Seq.R2_L007.T C3N-01518 GBM RNA-Seq tumor CPT0167640009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4673953394 FASTQ R2_L007 unaligned CPTAC3 172af382-b92b-46ec-a3a0-e64df197f327 8ab58c38ef873c14e6f727759ac5a092 { 'aliquot_tag': 'ALQ_567181fe', 'gdc_sample_type': 'Primary Tumor' } +C3N-01518.RNA-Seq.genomic.T.hg38 C3N-01518 GBM RNA-Seq tumor CPT0167640009 622926d3-62e6-48f3-b4fa-5f8eb73ec25d.rna_seq.genomic.gdc_realn.bam 9338322289 BAM genomic harmonized CPTAC3 6849f874-a34a-44c6-a708-6db2a2ccdc10 e70432537fd99cc32949e9fee9643250 { 'aliquot_tag': 'ALQ_567181fe', 'gdc_sample_type': 'Primary Tumor' } +C3N-01518.RNA-Seq.R1_L007.T C3N-01518 GBM RNA-Seq tumor CPT0167640009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4361775821 FASTQ R1_L007 unaligned CPTAC3 b2aafa3a-4775-467c-80bd-ab1e0fb066cd eddf0e5174a0b270b486da155274fabf { 'aliquot_tag': 'ALQ_567181fe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01518.RNA-Seq.R2_L007.T C3N-01518 GBM RNA-Seq tumor CPT0167640009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4673953394 FASTQ R2_L007 unaligned CPTAC3 172af382-b92b-46ec-a3a0-e64df197f327 8ab58c38ef873c14e6f727759ac5a092 { 'aliquot_tag': 'ALQ_567181fe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01518.RNA-Seq.transcriptome.T.hg38 C3N-01518 GBM RNA-Seq tumor CPT0167640009 622926d3-62e6-48f3-b4fa-5f8eb73ec25d.rna_seq.transcriptome.gdc_realn.bam 12097908837 BAM transcriptome harmonized CPTAC3 e9c02a5c-69b3-49ff-80b4-69bda66a24ee 617251201681aa6f4e495eda49e8d534 { 'aliquot_tag': 'ALQ_567181fe', 'gdc_sample_type': 'Primary Tumor' } C3N-01518.WGS.N C3N-01518 GBM WGS blood_normal CPT0167700002 CPT0167700002.WholeGenome.RP-1303.bam 61669542373 BAM aligned CPTAC3 37fc6d5e-dd8d-4455-9b59-79bc87e2560c 8083347f1e153802f8d94307c797179c { 'aliquot_tag': 'ALQ_ff7f2d13', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01518.WGS.N.hg38 C3N-01518 GBM WGS blood_normal CPT0167700002 c5e6f8ca-f7f9-48e5-b8b2-cf81562b323e_wgs_gdc_realn.bam 90499823103 BAM harmonized CPTAC3 94e28d29-60d0-4731-9cc1-a406c71c384d af350601a2fc32639960e4899c101304 { 'aliquot_tag': 'ALQ_ff7f2d13', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26080,12 +28028,15 @@ C3N-01518.WXS.T.hg38 C3N-01518 GBM WXS tumor CPT0167640006 9ea35a6a-671b-47cc-95 C3N-01520.MethArray.Green.T C3N-01520 UCEC Methylation Array tumor CPT0076860009 202178770083_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 9682606c-e69c-4633-a518-ef13e4a0c5fd 53fe0efdc2a18825a0ba6c00e34001a8 { 'aliquot_tag': 'ALQ_6b1dac87', 'gdc_sample_type': 'Primary Tumor' } C3N-01520.MethArray.Red.T C3N-01520 UCEC Methylation Array tumor CPT0076860009 202178770083_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 b2e23e2f-3266-4a75-8554-7a6ac46ae3a3 fe39952467cdf6a5787cb07feae4978e { 'aliquot_tag': 'ALQ_6b1dac87', 'gdc_sample_type': 'Primary Tumor' } C3N-01520.RNA-Seq.chimeric.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076860006 dfc938b2-1bda-4d68-9486-637a145acf3f.rna_seq.chimeric.gdc_realn.bam 184458655 BAM chimeric harmonized CPTAC3 ada480d6-97d8-409a-a855-c7df68658f6f bb440c71a36737add4c4150bd668b4b9 { 'aliquot_tag': 'ALQ_fba2b116', 'gdc_sample_type': 'Primary Tumor' } -C3N-01520.RNA-Seq.genomic.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076860006 dfc938b2-1bda-4d68-9486-637a145acf3f.rna_seq.genomic.gdc_realn.bam 9590208993 BAM genomic harmonized CPTAC3 7a852127-e551-4405-a410-38317c53ce94 94fb7b84b5c761ec3f49b13b14a64120 { 'aliquot_tag': 'ALQ_fba2b116', 'gdc_sample_type': 'Primary Tumor' } -C3N-01520.RNA-Seq.R1_L007.T C3N-01520 UCEC RNA-Seq tumor CPT0076860006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L007_R1_001.fastq.gz 4667458627 FASTQ R1_L007 unaligned CPTAC3 a43b1b15-3b59-4e11-b589-8d89b7e63209 0f6a9838cd5fcadd275d825367d43859 { 'aliquot_tag': 'ALQ_fba2b116', 'gdc_sample_type': 'Primary Tumor' } -C3N-01520.RNA-Seq.R1_.T C3N-01520 UCEC RNA-Seq tumor CPT0076900001 20210714_P1_A5_WB7988_plate1_S5_R1_001.fastq.gz 9890179819 FASTQ R1_ unaligned CPTAC3 0c4ae450-999f-451c-a337-9d2065d27a6a 0ee54c836faae4604d06f84e48ebe5f0 { 'aliquot_tag': 'ALQ_21da02b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01520.RNA-Seq.R2_L007.T C3N-01520 UCEC RNA-Seq tumor CPT0076860006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L007_R2_001.fastq.gz 5031406044 FASTQ R2_L007 unaligned CPTAC3 b3135f8c-5c50-41a8-ae39-a427c93a993f fbffd2ca09af7b2afa761033f23feab0 { 'aliquot_tag': 'ALQ_fba2b116', 'gdc_sample_type': 'Primary Tumor' } -C3N-01520.RNA-Seq.R2_.T C3N-01520 UCEC RNA-Seq tumor CPT0076900001 20210714_P1_A5_WB7988_plate1_S5_R2_001.fastq.gz 10396004046 FASTQ R2_ unaligned CPTAC3 e000df0d-00c1-447a-8b75-3d93e441a397 38168e0d3c336a787108e3f59ba993a2 { 'aliquot_tag': 'ALQ_21da02b0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01520.RNA-Seq.chimeric.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076900001 a3894135-870f-4d03-bf68-1d84f811f60e.rna_seq.chimeric.gdc_realn.bam 292074538 BAM chimeric harmonized CPTAC3 f1cc4b67-a664-4f57-b530-1bbac3fa04da 5aa3d0ef96c2ccb9406116e4628e31a4 { 'aliquot_tag': 'ALQ_21da02b0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01520.RNA-Seq.genomic.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076860006 dfc938b2-1bda-4d68-9486-637a145acf3f.rna_seq.genomic.gdc_realn.bam 9590208993 BAM genomic harmonized CPTAC3 44ae869f-f65d-4b15-a8a3-86a1a5de14df 94fb7b84b5c761ec3f49b13b14a64120 { 'aliquot_tag': 'ALQ_fba2b116', 'gdc_sample_type': 'Primary Tumor' } +C3N-01520.RNA-Seq.genomic.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076900001 a3894135-870f-4d03-bf68-1d84f811f60e.rna_seq.genomic.gdc_realn.bam 15306118143 BAM genomic harmonized CPTAC3 01917716-235a-4a1a-a097-234b8fab513a 30eb7db505d48a31c88007ed2aaa7d00 { 'aliquot_tag': 'ALQ_21da02b0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01520.RNA-Seq.R1_L007.T C3N-01520 UCEC RNA-Seq tumor CPT0076860006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L007_R1_001.fastq.gz 4667458627 FASTQ R1_L007 unaligned CPTAC3 a43b1b15-3b59-4e11-b589-8d89b7e63209 0f6a9838cd5fcadd275d825367d43859 { 'aliquot_tag': 'ALQ_fba2b116', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01520.RNA-Seq.R2_L007.T C3N-01520 UCEC RNA-Seq tumor CPT0076860006 170830_UNC31-K00269_0078_AHLCVMBBXX_GCCAAT_S2_L007_R2_001.fastq.gz 5031406044 FASTQ R2_L007 unaligned CPTAC3 b3135f8c-5c50-41a8-ae39-a427c93a993f fbffd2ca09af7b2afa761033f23feab0 { 'aliquot_tag': 'ALQ_fba2b116', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01520.RNA-Seq.T C3N-01520 UCEC RNA-Seq tumor CPT0076900001 20210714_P1_A5_WB7988_plate1_S5_R1_001.fastq.gz 9890179819 FASTQ unaligned CPTAC3 0c4ae450-999f-451c-a337-9d2065d27a6a 0ee54c836faae4604d06f84e48ebe5f0 +C3N-01520.RNA-Seq.T C3N-01520 UCEC RNA-Seq tumor CPT0076900001 20210714_P1_A5_WB7988_plate1_S5_R2_001.fastq.gz 10396004046 FASTQ unaligned CPTAC3 e000df0d-00c1-447a-8b75-3d93e441a397 38168e0d3c336a787108e3f59ba993a2 C3N-01520.RNA-Seq.transcriptome.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076860006 dfc938b2-1bda-4d68-9486-637a145acf3f.rna_seq.transcriptome.gdc_realn.bam 12913929121 BAM transcriptome harmonized CPTAC3 ec6e6aa0-213d-465a-bb81-9d9fd1be70f8 c7868484e78a9e51015da44c0e1d0046 { 'aliquot_tag': 'ALQ_fba2b116', 'gdc_sample_type': 'Primary Tumor' } +C3N-01520.RNA-Seq.transcriptome.T.hg38 C3N-01520 UCEC RNA-Seq tumor CPT0076900001 a3894135-870f-4d03-bf68-1d84f811f60e.rna_seq.transcriptome.gdc_realn.bam 7680379816 BAM transcriptome harmonized CPTAC3 4f88d89e-62ee-41e4-9344-d44972f8c107 0f0e7c71efb664746e177ac92d614a5a { 'aliquot_tag': 'ALQ_21da02b0', 'gdc_sample_type': 'Primary Tumor' } C3N-01520.WGS.N C3N-01520 UCEC WGS blood_normal CPT0076940002 CPT0076940002.WholeGenome.RP-1303.bam 62916695063 BAM aligned CPTAC3 c8b83d9e-42d2-41f4-9a34-2c1bc1a5729c 6764764cb37e5946aa9bb55a8a7b4430 { 'aliquot_tag': 'ALQ_4d53f5ca', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01520.WGS.N.hg38 C3N-01520 UCEC WGS blood_normal CPT0076940002 22d8111e-ed85-442f-a8ff-2bc44792e155_gdc_realn.bam 91255036552 BAM harmonized CPTAC3 021c018b-52e5-4d30-86e0-a0758b6eb859 74348a916501ab87b030bfb6b2f0f6c8 { 'aliquot_tag': 'ALQ_4d53f5ca', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01520.WGS.T C3N-01520 UCEC WGS tumor CPT0076860009 CPT0076860009.WholeGenome.RP-1303.bam 74481411422 BAM aligned CPTAC3 3c9e671b-413c-45e4-a004-0fa9a7cb7032 57bc5ae85472732ea73960c2851fc165 { 'aliquot_tag': 'ALQ_6b1dac87', 'gdc_sample_type': 'Primary Tumor' } @@ -26099,12 +28050,15 @@ C3N-01521.MethArray.Red.T C3N-01521 UCEC Methylation Array tumor CPT0076680009 2 C3N-01521.miRNA-Seq.T C3N-01521 UCEC miRNA-Seq tumor CPT0076680006 181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L008_R1_001.unaln.bam 240573660 BAM unaligned CPTAC3 35ba21c9-eba6-4f3f-b514-49d4cc3d6f61 6dc8b3df2caa2b548f8d4d2ea30faa96 { 'aliquot_tag': 'ALQ_7e986e07', 'gdc_sample_type': 'Primary Tumor' } C3N-01521.miRNA-Seq.T.hg38 C3N-01521 UCEC miRNA-Seq tumor CPT0076680006 c97d99fc-8005-48b7-a015-d566fbcf939f_mirnaseq_gdc_realn.bam 265964577 BAM harmonized CPTAC3 b4f25abb-063b-4685-8206-ccdbc0ece742 0f72bf45ce9e6f210823a6a6ac5fae92 { 'aliquot_tag': 'ALQ_7e986e07', 'gdc_sample_type': 'Primary Tumor' } C3N-01521.RNA-Seq.chimeric.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076680006 197c8372-4ffb-49f1-8369-43093aa0d6a4.rna_seq.chimeric.gdc_realn.bam 231388191 BAM chimeric harmonized CPTAC3 094589cc-5fdb-459d-880b-5a00af568045 283dfe5374785aaec720e239544f0223 { 'aliquot_tag': 'ALQ_7e986e07', 'gdc_sample_type': 'Primary Tumor' } -C3N-01521.RNA-Seq.genomic.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076680006 197c8372-4ffb-49f1-8369-43093aa0d6a4.rna_seq.genomic.gdc_realn.bam 7904311139 BAM genomic harmonized CPTAC3 3454f80b-0ba9-4737-95ea-b60fe3626c0b e3eb7d7fef004d533bc9687d50743628 { 'aliquot_tag': 'ALQ_7e986e07', 'gdc_sample_type': 'Primary Tumor' } -C3N-01521.RNA-Seq.R1_L007.T C3N-01521 UCEC RNA-Seq tumor CPT0076680006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L007_R1_001.fastq.gz 3628451536 FASTQ R1_L007 unaligned CPTAC3 0acc093f-71f7-4f80-a9b2-20e017cbd7e4 a158fcdf9c88b27c7bf0a1e9a9ef04d1 { 'aliquot_tag': 'ALQ_7e986e07', 'gdc_sample_type': 'Primary Tumor' } -C3N-01521.RNA-Seq.R1_.T C3N-01521 UCEC RNA-Seq tumor CPT0076720001 20210714_P1_E11_WB7988_plate1_S59_R1_001.fastq.gz 5998969341 FASTQ R1_ unaligned CPTAC3 b4a80f50-0c06-48b6-a02c-e06b9b734727 561cc6955be33d38e3eafd32521352f3 { 'aliquot_tag': 'ALQ_611030a0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01521.RNA-Seq.R2_L007.T C3N-01521 UCEC RNA-Seq tumor CPT0076680006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L007_R2_001.fastq.gz 3870291857 FASTQ R2_L007 unaligned CPTAC3 1b05444d-acbf-4aa3-9981-0803c58db907 741c08c4ef72952697d604b7dfd10be5 { 'aliquot_tag': 'ALQ_7e986e07', 'gdc_sample_type': 'Primary Tumor' } -C3N-01521.RNA-Seq.R2_.T C3N-01521 UCEC RNA-Seq tumor CPT0076720001 20210714_P1_E11_WB7988_plate1_S59_R2_001.fastq.gz 6190702443 FASTQ R2_ unaligned CPTAC3 f4046dfe-3bda-45d4-abb3-d4586b5e3802 d3dd17578eb9d91f3b29d29be4abd64c { 'aliquot_tag': 'ALQ_611030a0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01521.RNA-Seq.chimeric.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076720001 12f0c136-cdee-4ca2-b911-96ed1c53eada.rna_seq.chimeric.gdc_realn.bam 161032463 BAM chimeric harmonized CPTAC3 368ddef6-d51c-487f-be0c-c78173f2339b 03b3d3239218b81c94cc670c736d438d { 'aliquot_tag': 'ALQ_611030a0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01521.RNA-Seq.genomic.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076680006 197c8372-4ffb-49f1-8369-43093aa0d6a4.rna_seq.genomic.gdc_realn.bam 7904311139 BAM genomic harmonized CPTAC3 854f3c1d-3b0e-43af-9472-e94319f50c9f e3eb7d7fef004d533bc9687d50743628 { 'aliquot_tag': 'ALQ_7e986e07', 'gdc_sample_type': 'Primary Tumor' } +C3N-01521.RNA-Seq.genomic.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076720001 12f0c136-cdee-4ca2-b911-96ed1c53eada.rna_seq.genomic.gdc_realn.bam 9574238401 BAM genomic harmonized CPTAC3 abe02a64-d0ad-4dc2-9ded-92d357ea8624 0641b895b1cad5bbb344b7f0fc1649fb { 'aliquot_tag': 'ALQ_611030a0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01521.RNA-Seq.R1_L007.T C3N-01521 UCEC RNA-Seq tumor CPT0076680006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L007_R1_001.fastq.gz 3628451536 FASTQ R1_L007 unaligned CPTAC3 0acc093f-71f7-4f80-a9b2-20e017cbd7e4 a158fcdf9c88b27c7bf0a1e9a9ef04d1 { 'aliquot_tag': 'ALQ_7e986e07', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01521.RNA-Seq.R2_L007.T C3N-01521 UCEC RNA-Seq tumor CPT0076680006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACAGTG_S3_L007_R2_001.fastq.gz 3870291857 FASTQ R2_L007 unaligned CPTAC3 1b05444d-acbf-4aa3-9981-0803c58db907 741c08c4ef72952697d604b7dfd10be5 { 'aliquot_tag': 'ALQ_7e986e07', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01521.RNA-Seq.T C3N-01521 UCEC RNA-Seq tumor CPT0076720001 20210714_P1_E11_WB7988_plate1_S59_R1_001.fastq.gz 5998969341 FASTQ unaligned CPTAC3 b4a80f50-0c06-48b6-a02c-e06b9b734727 561cc6955be33d38e3eafd32521352f3 +C3N-01521.RNA-Seq.T C3N-01521 UCEC RNA-Seq tumor CPT0076720001 20210714_P1_E11_WB7988_plate1_S59_R2_001.fastq.gz 6190702443 FASTQ unaligned CPTAC3 f4046dfe-3bda-45d4-abb3-d4586b5e3802 d3dd17578eb9d91f3b29d29be4abd64c C3N-01521.RNA-Seq.transcriptome.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076680006 197c8372-4ffb-49f1-8369-43093aa0d6a4.rna_seq.transcriptome.gdc_realn.bam 10934712720 BAM transcriptome harmonized CPTAC3 1a92c401-5acd-4512-8fa6-830d60383923 e491aa27629cb848a9a0d52ca6e237fa { 'aliquot_tag': 'ALQ_7e986e07', 'gdc_sample_type': 'Primary Tumor' } +C3N-01521.RNA-Seq.transcriptome.T.hg38 C3N-01521 UCEC RNA-Seq tumor CPT0076720001 12f0c136-cdee-4ca2-b911-96ed1c53eada.rna_seq.transcriptome.gdc_realn.bam 6108001345 BAM transcriptome harmonized CPTAC3 9f8759de-ae71-4902-bdd3-0a5c4721ddc5 a36032e1608e5abfe11aa87620194649 { 'aliquot_tag': 'ALQ_611030a0', 'gdc_sample_type': 'Primary Tumor' } C3N-01521.WGS.N C3N-01521 UCEC WGS blood_normal CPT0076760002 CPT0076760002.WholeGenome.RP-1303.bam 63986772932 BAM aligned CPTAC3 8117a468-0975-4be1-a19a-4f962c4e55f3 802aa52b371cab4c8413bc6d74b456b6 { 'aliquot_tag': 'ALQ_d99c7da', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01521.WGS.N.hg38 C3N-01521 UCEC WGS blood_normal CPT0076760002 ac16a9c0-e9f4-4bdf-ba76-78d9438f0b10_gdc_realn.bam 93588727144 BAM harmonized CPTAC3 de536564-ee0b-471a-a157-203f5b67fb71 5fe746ea0808a1b78d98fa9e58fad434 { 'aliquot_tag': 'ALQ_d99c7da', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01521.WGS.T C3N-01521 UCEC WGS tumor CPT0076680009 CPT0076680009.WholeGenome.RP-1303.bam 64693443226 BAM aligned CPTAC3 6fd00a5f-6e62-483f-920a-9ec4bbafe9f6 3e6689db72b9ee2bb5c89e8e3471921c { 'aliquot_tag': 'ALQ_ee277396', 'gdc_sample_type': 'Primary Tumor' } @@ -26128,16 +28082,16 @@ C3N-01522.DUP_2285798b.WXS.T.hg38 C3N-01522 CCRCC WXS tumor CPT0077130009 3e70ad C3N-01522.DUP_8f5a4daa.miRNA-Seq.T C3N-01522 CCRCC miRNA-Seq tumor CPT0077120006 200526_UNC32-K00270_0248_BHH7WFBBXY_ACTGAT_S21_L004_R1_001.unaln.bam 353133256 BAM unaligned CPTAC3 6bfbb836-949f-4354-b723-dbdfea4fd255 f2fccb3ddb01d17c766085046a8253ce { 'aliquot_tag': 'DUP_8f5a4daa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01522.DUP_8f5a4daa.miRNA-Seq.T.hg38 C3N-01522 CCRCC miRNA-Seq tumor CPT0077120006 6725a6d9-6ef7-422b-a3c7-6b0951d5d246_mirnaseq_gdc_realn.bam 384573377 BAM harmonized CPTAC3 6feb38b3-5a4c-4352-b981-47e61ba7b39c 413f18d5faed76023cbdf9f45220d64c { 'aliquot_tag': 'DUP_8f5a4daa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01522.DUP_8f5a4daa.RNA-Seq.chimeric.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 7c7e376c-3aaf-4a29-b93e-35310e08f5b4.rna_seq.chimeric.gdc_realn.bam 224714554 BAM chimeric harmonized CPTAC3 66fc3b48-89cc-4ab9-a247-3fb69a1abb9f 56a3ec46351240bb85585239585e9e87 { 'aliquot_tag': 'DUP_8f5a4daa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01522.DUP_8f5a4daa.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 7c7e376c-3aaf-4a29-b93e-35310e08f5b4.rna_seq.genomic.gdc_realn.bam 9057133159 BAM genomic harmonized CPTAC3 053ea288-f612-49aa-b348-754ef0b2d78c 0c7db716431580a97818927060183005 { 'aliquot_tag': 'DUP_8f5a4daa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01522.DUP_8f5a4daa.RNA-Seq.R1_L002.T C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4358892188 FASTQ R1_L002 unaligned CPTAC3 f077a03a-268f-45d7-9010-417fe026a87b 4d1dd4ded0521164cf679200ba356b10 { 'aliquot_tag': 'DUP_8f5a4daa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01522.DUP_8f5a4daa.RNA-Seq.R2_L002.T C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4905885878 FASTQ R2_L002 unaligned CPTAC3 c2771b42-ead4-4fa2-8070-33bae5712e94 e18f2808cde806b6e32fbbee4648d61d { 'aliquot_tag': 'DUP_8f5a4daa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01522.DUP_8f5a4daa.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 7c7e376c-3aaf-4a29-b93e-35310e08f5b4.rna_seq.genomic.gdc_realn.bam 9057133159 BAM genomic harmonized CPTAC3 68a9a9d7-a41d-4f42-b20b-6bf058b9628b 0c7db716431580a97818927060183005 { 'aliquot_tag': 'DUP_8f5a4daa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01522.DUP_8f5a4daa.RNA-Seq.R1_L002.T C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4358892188 FASTQ R1_L002 unaligned CPTAC3 f077a03a-268f-45d7-9010-417fe026a87b 4d1dd4ded0521164cf679200ba356b10 { 'aliquot_tag': 'DUP_8f5a4daa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3N-01522.DUP_8f5a4daa.RNA-Seq.R2_L002.T C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 200519_UNC31-K00269_0279_AHH5VTBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4905885878 FASTQ R2_L002 unaligned CPTAC3 c2771b42-ead4-4fa2-8070-33bae5712e94 e18f2808cde806b6e32fbbee4648d61d { 'aliquot_tag': 'DUP_8f5a4daa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3N-01522.DUP_8f5a4daa.RNA-Seq.transcriptome.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077120006 7c7e376c-3aaf-4a29-b93e-35310e08f5b4.rna_seq.transcriptome.gdc_realn.bam 12153260606 BAM transcriptome harmonized CPTAC3 f279c190-505d-4bfd-a1b0-446aca448fcc b4f653e46f2fc359bc5815d681196a8e { 'aliquot_tag': 'DUP_8f5a4daa', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01522.DUP_b23a641a.miRNA-Seq.T C3N-01522 CCRCC miRNA-Seq tumor CPT0077130006 200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L004_R1_001.unaln.bam 331444243 BAM unaligned CPTAC3 035f9d77-c7f9-494a-8666-6c1a9d644dbc 91167a486a0231b4132bae04f155346a { 'aliquot_tag': 'DUP_b23a641a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01522.DUP_b23a641a.miRNA-Seq.T.hg38 C3N-01522 CCRCC miRNA-Seq tumor CPT0077130006 f888c0ee-7aca-4e9d-838a-d8ebc7eef5cb_mirnaseq_gdc_realn.bam 360554761 BAM harmonized CPTAC3 6afcc2b2-7ae7-429e-ac17-8d8ce9a3b0e3 77ec184374f5984909b52cfbd71e9044 { 'aliquot_tag': 'DUP_b23a641a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01522.DUP_b23a641a.RNA-Seq.chimeric.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 e7a5a046-b38a-4f93-aee2-f16c49ee0f22.rna_seq.chimeric.gdc_realn.bam 151682204 BAM chimeric harmonized CPTAC3 ece63487-d7e9-4d83-9cb6-9d7bb70c28a2 45103d4fbc4259a1bfd3370c9f004efa { 'aliquot_tag': 'DUP_b23a641a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01522.DUP_b23a641a.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 e7a5a046-b38a-4f93-aee2-f16c49ee0f22.rna_seq.genomic.gdc_realn.bam 7612857625 BAM genomic harmonized CPTAC3 64089696-a513-4179-8ee7-1e74d532e46a 8ed35f8c09bfe62a676e343903606a2e { 'aliquot_tag': 'DUP_b23a641a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01522.DUP_b23a641a.RNA-Seq.R1_L002.T C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTTGGTAT-CCAAGTCC_S6_L002_R1_001.fastq.gz 3718770514 FASTQ R1_L002 unaligned CPTAC3 408e63b6-0791-4337-bdb3-7287703499da 6bdd48cf9ac94bd0936929dc858ef367 { 'aliquot_tag': 'DUP_b23a641a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01522.DUP_b23a641a.RNA-Seq.R2_L002.T C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTTGGTAT-CCAAGTCC_S6_L002_R2_001.fastq.gz 4224799005 FASTQ R2_L002 unaligned CPTAC3 2fd64739-e004-49a1-989a-b8524889d712 066e22d27426978c88fdc628e057fa03 { 'aliquot_tag': 'DUP_b23a641a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01522.DUP_b23a641a.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 e7a5a046-b38a-4f93-aee2-f16c49ee0f22.rna_seq.genomic.gdc_realn.bam 7612857625 BAM genomic harmonized CPTAC3 164eefe0-ea79-43c0-aae4-df4037a103b3 8ed35f8c09bfe62a676e343903606a2e { 'aliquot_tag': 'DUP_b23a641a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01522.DUP_b23a641a.RNA-Seq.R1_L002.T C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTTGGTAT-CCAAGTCC_S6_L002_R1_001.fastq.gz 3718770514 FASTQ R1_L002 unaligned CPTAC3 408e63b6-0791-4337-bdb3-7287703499da 6bdd48cf9ac94bd0936929dc858ef367 { 'aliquot_tag': 'DUP_b23a641a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3N-01522.DUP_b23a641a.RNA-Seq.R2_L002.T C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 200519_UNC31-K00269_0279_AHH5VTBBXY_CTTGGTAT-CCAAGTCC_S6_L002_R2_001.fastq.gz 4224799005 FASTQ R2_L002 unaligned CPTAC3 2fd64739-e004-49a1-989a-b8524889d712 066e22d27426978c88fdc628e057fa03 { 'aliquot_tag': 'DUP_b23a641a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3N-01522.DUP_b23a641a.RNA-Seq.transcriptome.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077130006 e7a5a046-b38a-4f93-aee2-f16c49ee0f22.rna_seq.transcriptome.gdc_realn.bam 9372587238 BAM transcriptome harmonized CPTAC3 24dda277-269e-45d9-86f9-d4d4bab235d6 08d5a2cfb15c2501c10aa51e67fca0be { 'aliquot_tag': 'DUP_b23a641a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01522.MethArray.Green.A C3N-01522 CCRCC Methylation Array tissue_normal CPT0077140009 204930640061_R06C01_Grn.idat 13677885 IDAT Green NA CPTAC3 d0f98827-4f34-4b18-8efd-d49a5857f486 c8e22a116ecd24b8e7bb74b7837da44b { 'aliquot_tag': 'ALQ_90a5a59b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01522.MethArray.Green.T C3N-01522 CCRCC Methylation Array tumor CPT0077110009 202178770143_R01C01_Grn.idat 13676241 IDAT Green NA CPTAC3 a8c16193-0217-4f9e-ae09-6c7c6dcbd51f af8d2b334dc67930cc41873696f9961f { 'aliquot_tag': 'ALQ_58452aeb', 'gdc_sample_type': 'Primary Tumor' } @@ -26150,11 +28104,11 @@ C3N-01522.miRNA-Seq.T.hg38 C3N-01522 CCRCC miRNA-Seq tumor CPT0077110006 e2da755 C3N-01522.RNA-Seq.chimeric.A.hg38 C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 e7375b41-dfed-4681-a2d9-f7b0b8f406cb.rna_seq.chimeric.gdc_realn.bam 70651261 BAM chimeric harmonized CPTAC3 a3d11894-20a8-4996-81db-b00b1477a834 3d2ece7a83259a5a6209ae4379b6c7cd { 'aliquot_tag': 'ALQ_1ab80a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01522.RNA-Seq.chimeric.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 c8f9b35f-69df-4612-9ffa-5aadb1126b67.rna_seq.chimeric.gdc_realn.bam 212911222 BAM chimeric harmonized CPTAC3 3b6e189f-a4ee-4fab-9455-61c4c11f2058 33f591d237f6eed74122815e27744625 { 'aliquot_tag': 'ALQ_c8fa377a', 'gdc_sample_type': 'Primary Tumor' } C3N-01522.RNA-Seq.genomic.A.hg38 C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 e7375b41-dfed-4681-a2d9-f7b0b8f406cb.rna_seq.genomic.gdc_realn.bam 8447572020 BAM genomic harmonized CPTAC3 ec0aae63-d002-4934-82e5-e1eb8b3d4816 94024af76f86eb03e30142334e9c12c0 { 'aliquot_tag': 'ALQ_1ab80a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01522.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 c8f9b35f-69df-4612-9ffa-5aadb1126b67.rna_seq.genomic.gdc_realn.bam 6873011211 BAM genomic harmonized CPTAC3 894350ba-43a4-4f12-96a2-97a343a275d5 5fa220c4b0101729b0464e96c57452ea { 'aliquot_tag': 'ALQ_c8fa377a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01522.RNA-Seq.R1_L004.A C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGAAA_S16_L004_R1_001.fastq.gz 4323260349 FASTQ R1_L004 unaligned CPTAC3 c5bcda2b-0deb-4201-8a2e-a084eb4e7913 82d87a254733a01ab8a69c9a1e708058 { 'aliquot_tag': 'ALQ_1ab80a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01522.RNA-Seq.R1_L007.T C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L007_R1_001.fastq.gz 3487797290 FASTQ R1_L007 unaligned CPTAC3 2627ae9b-1a95-4fff-9221-647706199549 6bd632aad639bb5ea4da5d8a08455aec { 'aliquot_tag': 'ALQ_c8fa377a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01522.RNA-Seq.R2_L004.A C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGAAA_S16_L004_R2_001.fastq.gz 4165359528 FASTQ R2_L004 unaligned CPTAC3 9e46539f-5d80-471e-9d57-2ef355a2c155 1a73b1c0ec657b388739963c3e7876e7 { 'aliquot_tag': 'ALQ_1ab80a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01522.RNA-Seq.R2_L007.T C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L007_R2_001.fastq.gz 3799127488 FASTQ R2_L007 unaligned CPTAC3 ba7d5cb5-d91f-4501-a9d4-f0edf2a247d4 c787abc84f2a73be07b92709bf7660f5 { 'aliquot_tag': 'ALQ_c8fa377a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01522.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 c8f9b35f-69df-4612-9ffa-5aadb1126b67.rna_seq.genomic.gdc_realn.bam 6873011211 BAM genomic harmonized CPTAC3 561a3b0a-51d2-4d8d-a9d0-18760ffc19ff 5fa220c4b0101729b0464e96c57452ea { 'aliquot_tag': 'ALQ_c8fa377a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01522.RNA-Seq.R1_L004.A C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGAAA_S16_L004_R1_001.fastq.gz 4323260349 FASTQ R1_L004 unaligned CPTAC3 c5bcda2b-0deb-4201-8a2e-a084eb4e7913 82d87a254733a01ab8a69c9a1e708058 { 'aliquot_tag': 'ALQ_1ab80a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01522.RNA-Seq.R1_L007.T C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L007_R1_001.fastq.gz 3487797290 FASTQ R1_L007 unaligned CPTAC3 2627ae9b-1a95-4fff-9221-647706199549 6bd632aad639bb5ea4da5d8a08455aec { 'aliquot_tag': 'ALQ_c8fa377a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01522.RNA-Seq.R2_L004.A C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGAAA_S16_L004_R2_001.fastq.gz 4165359528 FASTQ R2_L004 unaligned CPTAC3 9e46539f-5d80-471e-9d57-2ef355a2c155 1a73b1c0ec657b388739963c3e7876e7 { 'aliquot_tag': 'ALQ_1ab80a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01522.RNA-Seq.R2_L007.T C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L007_R2_001.fastq.gz 3799127488 FASTQ R2_L007 unaligned CPTAC3 ba7d5cb5-d91f-4501-a9d4-f0edf2a247d4 c787abc84f2a73be07b92709bf7660f5 { 'aliquot_tag': 'ALQ_c8fa377a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01522.RNA-Seq.transcriptome.A.hg38 C3N-01522 CCRCC RNA-Seq tissue_normal CPT0077140006 e7375b41-dfed-4681-a2d9-f7b0b8f406cb.rna_seq.transcriptome.gdc_realn.bam 9892666763 BAM transcriptome harmonized CPTAC3 b539a9ea-5918-4352-8e00-72323931517b 33bb4b6d117950d78830d69aa305fd40 { 'aliquot_tag': 'ALQ_1ab80a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01522.RNA-Seq.transcriptome.T.hg38 C3N-01522 CCRCC RNA-Seq tumor CPT0077110006 c8f9b35f-69df-4612-9ffa-5aadb1126b67.rna_seq.transcriptome.gdc_realn.bam 9952414582 BAM transcriptome harmonized CPTAC3 55a0106a-0c91-4705-8749-ad8f7aebef9c 0802e845769688aa565a21c0c24af3f3 { 'aliquot_tag': 'ALQ_c8fa377a', 'gdc_sample_type': 'Primary Tumor' } C3N-01522.WGS.A C3N-01522 CCRCC WGS tissue_normal CPT0077140009 CPT0077140009.WholeGenome.RP-1303.bam 63343250805 BAM aligned CPTAC3 7864507e-0e85-436d-99af-c1a793a08449 c6f4cc86983267b6e3b7c96a175ac837 { 'aliquot_tag': 'ALQ_90a5a59b', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -26175,16 +28129,16 @@ C3N-01523.miRNA-Seq.A C3N-01523 SAR miRNA-Seq tissue_normal CPT0095760006 181113 C3N-01523.miRNA-Seq.A.hg38 C3N-01523 SAR miRNA-Seq tissue_normal CPT0095760006 2473d0c7-9b90-413b-a5c7-ea65148cd3cb_mirnaseq_gdc_realn.bam 221770897 BAM harmonized CPTAC3 22d799aa-84a3-4454-9180-f75961d8126d 9987b9008485c12c575ba3899cde81fd { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01523.miRNA-Seq.T C3N-01523 SAR miRNA-Seq tumor CPT0095740006 181108_UNC31-K00269_0163_BH23TVBBXY_GTGGCC_S20_L008_R1_001.unaln.bam 221492355 BAM unaligned CPTAC3 cdd15f53-4d3a-41ba-b2dd-46716f3c21e4 9de88f4359e2ca94d0a7b2f6b08bc148 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor' } C3N-01523.miRNA-Seq.T.hg38 C3N-01523 SAR miRNA-Seq tumor CPT0095740006 b1984904-b807-4af4-856d-d2ffa0bfda0f_mirnaseq_gdc_realn.bam 248923825 BAM harmonized CPTAC3 72013b6d-fd07-4ce7-8a77-6d70b9a1fa9d 33c79d86ebc1594251e65443d073b5fc { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01523.RNA-Seq.chimeric.A.hg38 C3N-01523 SAR RNA-Seq tissue_normal CPT0095760006 84d75368-3bad-4e73-9d98-6042c4344c5c.rna_seq.chimeric.gdc_realn.bam 27379299 BAM chimeric harmonized CPTAC3 bb686d63-e40f-40ac-b8ce-1e8b90e51216 085f4cc0af8a621952630f9ff473866d { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01523.RNA-Seq.chimeric.T.hg38 C3N-01523 SAR RNA-Seq tumor CPT0095740006 b02afefa-6c87-462d-a59c-d30e240a4128.rna_seq.chimeric.gdc_realn.bam 79721612 BAM chimeric harmonized CPTAC3 72a817c6-ed21-47d9-ac31-724971b8dc97 8519bf35361e3df332aa66418b27e9b4 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01523.RNA-Seq.genomic.A.hg38 C3N-01523 SAR RNA-Seq tissue_normal CPT0095760006 84d75368-3bad-4e73-9d98-6042c4344c5c.rna_seq.genomic.gdc_realn.bam 8387885847 BAM genomic harmonized CPTAC3 561819dd-8a74-4855-92d8-a8b2f1258301 3255da0a625643241d514cce579a4b3e { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01523.RNA-Seq.genomic.T.hg38 C3N-01523 SAR RNA-Seq tumor CPT0095740006 b02afefa-6c87-462d-a59c-d30e240a4128.rna_seq.genomic.gdc_realn.bam 8978272302 BAM genomic harmonized CPTAC3 4e1d80ba-44d2-4d65-981a-583bb1792221 855f2ecbcbb1e1ecec947ff7db7045c0 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01523.RNA-Seq.R1_L007.A C3N-01523 SAR RNA-Seq tissue_normal CPT0095760006 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L007_R1_001.fastq.gz 4358228819 FASTQ R1_L007 unaligned CPTAC3 bde9e916-cb9f-4090-a499-3f88f84817e5 da56d264632928ec6bff87d7b552b522 { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01523.RNA-Seq.R1_L008.T C3N-01523 SAR RNA-Seq tumor CPT0095740006 171107_UNC32-K00270_0063_BHLNTCBBXX_CGATGT_S64_L008_R1_001.fastq.gz 4124394565 FASTQ R1_L008 unaligned CPTAC3 20b7b2db-8294-42c0-bb2d-fde19e2c79d4 17f6ade4e08dcfa0eecca57b79820256 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01523.RNA-Seq.R2_L007.A C3N-01523 SAR RNA-Seq tissue_normal CPT0095760006 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L007_R2_001.fastq.gz 4206500430 FASTQ R2_L007 unaligned CPTAC3 c1a28fb3-c7fa-4949-bff0-b4d6684f62e2 4cd1af0c1f9eec13924eafd602a11d29 { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01523.RNA-Seq.R2_L008.T C3N-01523 SAR RNA-Seq tumor CPT0095740006 171107_UNC32-K00270_0063_BHLNTCBBXX_CGATGT_S64_L008_R2_001.fastq.gz 4474140736 FASTQ R2_L008 unaligned CPTAC3 6f7ad0ef-7db7-4825-90ac-57e458fc783e 682594a1055d78e64e9946f8e461c5f9 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01523.RNA-Seq.transcriptome.A.hg38 C3N-01523 SAR RNA-Seq tissue_normal CPT0095760006 84d75368-3bad-4e73-9d98-6042c4344c5c.rna_seq.transcriptome.gdc_realn.bam 16287483166 BAM transcriptome harmonized CPTAC3 62589dfa-6b36-4fc4-83b7-88b9ab1e911a 32cf1ac37820f788289a05ac22a5118e { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01523.RNA-Seq.transcriptome.T.hg38 C3N-01523 SAR RNA-Seq tumor CPT0095740006 b02afefa-6c87-462d-a59c-d30e240a4128.rna_seq.transcriptome.gdc_realn.bam 11622771738 BAM transcriptome harmonized CPTAC3 4aea66c7-f491-4792-93bc-cb576f2a927c bfd9b8a5c97274bd8d9c939a37ba4b68 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01523.RNA-Seq.chimeric.A.hg38 C3N-01523 SAR RNA-Seq tissue_normal CPT0095760006 ff6be67d-d136-43aa-b052-da9b76374919.rna_seq.chimeric.gdc_realn.bam 27362979 BAM chimeric harmonized CPTAC3 44427415-091d-46de-9e16-2767d6768934 ef07712592c905586728f036137b2d68 { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01523.RNA-Seq.chimeric.T.hg38 C3N-01523 SAR RNA-Seq tumor CPT0095740006 4dc0bc22-4242-4a64-a359-39645127d4f6.rna_seq.chimeric.gdc_realn.bam 79690189 BAM chimeric harmonized CPTAC3 b56011f2-d91d-4dd5-852c-489e52879bb8 4482048cadc1408453d8a28e6e592f99 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01523.RNA-Seq.genomic.A.hg38 C3N-01523 SAR RNA-Seq tissue_normal CPT0095760006 ff6be67d-d136-43aa-b052-da9b76374919.rna_seq.genomic.gdc_realn.bam 8388653036 BAM genomic harmonized CPTAC3 a5b97010-fd5c-468b-80d4-8e939aa85900 80bd7049086cbc688cb509ad54d560eb { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01523.RNA-Seq.genomic.T.hg38 C3N-01523 SAR RNA-Seq tumor CPT0095740006 4dc0bc22-4242-4a64-a359-39645127d4f6.rna_seq.genomic.gdc_realn.bam 8979440877 BAM genomic harmonized CPTAC3 0b49b2e7-4220-4e43-a19c-c8577612bfd9 b8f1707afc1e7700c07760eb8682b333 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01523.RNA-Seq.R1_L007.A C3N-01523 SAR RNA-Seq tissue_normal CPT0095760006 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L007_R1_001.fastq.gz 4358228819 FASTQ R1_L007 unaligned CPTAC3 bde9e916-cb9f-4090-a499-3f88f84817e5 da56d264632928ec6bff87d7b552b522 { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01523.RNA-Seq.R1_L008.T C3N-01523 SAR RNA-Seq tumor CPT0095740006 171107_UNC32-K00270_0063_BHLNTCBBXX_CGATGT_S64_L008_R1_001.fastq.gz 4124394565 FASTQ R1_L008 unaligned CPTAC3 20b7b2db-8294-42c0-bb2d-fde19e2c79d4 17f6ade4e08dcfa0eecca57b79820256 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01523.RNA-Seq.R2_L007.A C3N-01523 SAR RNA-Seq tissue_normal CPT0095760006 180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L007_R2_001.fastq.gz 4206500430 FASTQ R2_L007 unaligned CPTAC3 c1a28fb3-c7fa-4949-bff0-b4d6684f62e2 4cd1af0c1f9eec13924eafd602a11d29 { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01523.RNA-Seq.R2_L008.T C3N-01523 SAR RNA-Seq tumor CPT0095740006 171107_UNC32-K00270_0063_BHLNTCBBXX_CGATGT_S64_L008_R2_001.fastq.gz 4474140736 FASTQ R2_L008 unaligned CPTAC3 6f7ad0ef-7db7-4825-90ac-57e458fc783e 682594a1055d78e64e9946f8e461c5f9 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01523.RNA-Seq.transcriptome.A.hg38 C3N-01523 SAR RNA-Seq tissue_normal CPT0095760006 ff6be67d-d136-43aa-b052-da9b76374919.rna_seq.transcriptome.gdc_realn.bam 16928553884 BAM transcriptome harmonized CPTAC3 fd7100da-3eeb-4ff2-a8f6-b9bfb1f7bba6 68874b3ef8ab09c320ac65e05ac994a0 { 'aliquot_tag': 'ALQ_2e960b6c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01523.RNA-Seq.transcriptome.T.hg38 C3N-01523 SAR RNA-Seq tumor CPT0095740006 4dc0bc22-4242-4a64-a359-39645127d4f6.rna_seq.transcriptome.gdc_realn.bam 13030933055 BAM transcriptome harmonized CPTAC3 9dbaabec-583a-4858-b2bd-257a1b6edb54 b2dbcdc9fbac2bfe34050bd23a198d44 { 'aliquot_tag': 'ALQ_5456580c', 'gdc_sample_type': 'Primary Tumor' } C3N-01523.WGS.A C3N-01523 SAR WGS tissue_normal CPT0095760008 CPT0095760008.WholeGenome.RP-1303.bam 57315770873 BAM aligned CPTAC3 4698d06f-900a-46ac-97e6-76cfc45d5b31 d46f1207571fbe86bb75375e9a742583 { 'aliquot_tag': 'ALQ_c92e266b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01523.WGS.A.hg38 C3N-01523 SAR WGS tissue_normal CPT0095760008 d08df0f0-791a-484a-9244-563c1fb0021e_wgs_gdc_realn.bam 84130701357 BAM harmonized CPTAC3 afaab460-ef3d-4a9f-b991-d796d211c969 b1d8d4a4b9236e7eefe344412378ba5b { 'aliquot_tag': 'ALQ_c92e266b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01523.WGS.N C3N-01523 SAR WGS blood_normal CPT0095770002 CPT0095770002.WholeGenome.RP-1303.bam 61005962735 BAM aligned CPTAC3 1abf660c-91cc-4347-b168-6ace5f04e6f7 7a7968fdc702f864558beecd9cb1377b { 'aliquot_tag': 'ALQ_149be6c5', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26206,16 +28160,16 @@ C3N-01524.DUP_28eda250.WXS.T.hg38 C3N-01524 CCRCC WXS tumor CPT0077300009 90b3bf C3N-01524.DUP_7e1e0e15.miRNA-Seq.T C3N-01524 CCRCC miRNA-Seq tumor CPT0077290006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAAAAG_S23_L004_R1_001.unaln.bam 273890281 BAM unaligned CPTAC3 fbd2e238-c5f9-4a25-8d3e-9e53b15547c3 037ca1c2b36f884fee880578e73b745d { 'aliquot_tag': 'DUP_7e1e0e15', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01524.DUP_7e1e0e15.miRNA-Seq.T.hg38 C3N-01524 CCRCC miRNA-Seq tumor CPT0077290006 53e567f4-aaba-4360-8829-4f5229503467_mirnaseq_gdc_realn.bam 300270570 BAM harmonized CPTAC3 9fb6afe4-62c5-49bc-9c87-48945b70b154 6e6c5e23f49a79d1b3bba01f584dc9e8 { 'aliquot_tag': 'DUP_7e1e0e15', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01524.DUP_7e1e0e15.RNA-Seq.chimeric.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 8f4e1986-14f0-4149-b660-4fac39b98c3c.rna_seq.chimeric.gdc_realn.bam 225547309 BAM chimeric harmonized CPTAC3 515e1d44-42d7-47f1-b2db-6d1df0fbd5e4 8a32794a9e32e3d012e2dd9854ee77de { 'aliquot_tag': 'DUP_7e1e0e15', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01524.DUP_7e1e0e15.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 8f4e1986-14f0-4149-b660-4fac39b98c3c.rna_seq.genomic.gdc_realn.bam 8497552412 BAM genomic harmonized CPTAC3 8e282aca-7c53-4822-8165-62fb428f3d88 6c4b7cd2a0e3b55995dbdab4b00314ec { 'aliquot_tag': 'DUP_7e1e0e15', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01524.DUP_7e1e0e15.RNA-Seq.R1_L002.T C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3969477324 FASTQ R1_L002 unaligned CPTAC3 4af6c8b6-f787-4d0c-99b0-6c968c820180 8577fff723b956ba2c702af4838e1778 { 'aliquot_tag': 'DUP_7e1e0e15', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01524.DUP_7e1e0e15.RNA-Seq.R2_L002.T C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCCAACGC-TTGGACTT_S8_L002_R2_001.fastq.gz 4665222178 FASTQ R2_L002 unaligned CPTAC3 8d356193-a566-4fd9-a190-3b120c552740 875104c886500785331e74b77978c558 { 'aliquot_tag': 'DUP_7e1e0e15', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01524.DUP_7e1e0e15.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 8f4e1986-14f0-4149-b660-4fac39b98c3c.rna_seq.genomic.gdc_realn.bam 8497552412 BAM genomic harmonized CPTAC3 3ee3d63c-b529-4bce-99be-160f97a96456 6c4b7cd2a0e3b55995dbdab4b00314ec { 'aliquot_tag': 'DUP_7e1e0e15', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01524.DUP_7e1e0e15.RNA-Seq.R1_L002.T C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3969477324 FASTQ R1_L002 unaligned CPTAC3 4af6c8b6-f787-4d0c-99b0-6c968c820180 8577fff723b956ba2c702af4838e1778 { 'aliquot_tag': 'DUP_7e1e0e15', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L002' } +C3N-01524.DUP_7e1e0e15.RNA-Seq.R2_L002.T C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 200519_UNC31-K00269_0279_AHH5VTBBXY_TCCAACGC-TTGGACTT_S8_L002_R2_001.fastq.gz 4665222178 FASTQ R2_L002 unaligned CPTAC3 8d356193-a566-4fd9-a190-3b120c552740 875104c886500785331e74b77978c558 { 'aliquot_tag': 'DUP_7e1e0e15', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L002' } C3N-01524.DUP_7e1e0e15.RNA-Seq.transcriptome.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077290006 8f4e1986-14f0-4149-b660-4fac39b98c3c.rna_seq.transcriptome.gdc_realn.bam 10745384683 BAM transcriptome harmonized CPTAC3 3ad040ae-c315-4f44-bfc3-827c334533f2 889b860e8dd1f784ab310260c736c3ed { 'aliquot_tag': 'DUP_7e1e0e15', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01524.DUP_b852bfc1.miRNA-Seq.T C3N-01524 CCRCC miRNA-Seq tumor CPT0077300006 200526_UNC32-K00270_0248_BHH7WFBBXY_CAACTA_S24_L004_R1_001.unaln.bam 352090110 BAM unaligned CPTAC3 dda69548-003e-4580-9310-d11e6314de6e 5e4305397458e6decfc27331aa4fb397 { 'aliquot_tag': 'DUP_b852bfc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01524.DUP_b852bfc1.miRNA-Seq.T.hg38 C3N-01524 CCRCC miRNA-Seq tumor CPT0077300006 37f79464-7dea-4477-a95c-4d7f553dd9bb_mirnaseq_gdc_realn.bam 382376913 BAM harmonized CPTAC3 75afac11-397e-4198-a68c-96c55e6c7e6c b238e3867cd1fb940feb8aca9d202c4d { 'aliquot_tag': 'DUP_b852bfc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01524.DUP_b852bfc1.RNA-Seq.chimeric.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 5786482a-c89b-4653-80b6-c5ac1eb4fb28.rna_seq.chimeric.gdc_realn.bam 229457088 BAM chimeric harmonized CPTAC3 ac391e7b-26f5-40c8-84e9-5e944ed0e456 5424de51280c26dc38c88bf998cdf2ee { 'aliquot_tag': 'DUP_b852bfc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01524.DUP_b852bfc1.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 5786482a-c89b-4653-80b6-c5ac1eb4fb28.rna_seq.genomic.gdc_realn.bam 8182461616 BAM genomic harmonized CPTAC3 f49a8fce-fd6a-445f-8482-5efd0ac64c22 c33632568542632549d2216566a5fdde { 'aliquot_tag': 'DUP_b852bfc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01524.DUP_b852bfc1.RNA-Seq.R1_L003.T C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 200519_UNC31-K00269_0279_AHH5VTBBXY_CCGTGAAG-CAGTGGAT_S10_L003_R1_001.fastq.gz 3834752470 FASTQ R1_L003 unaligned CPTAC3 8af7e4df-ca69-471b-a47f-2d6a3a9a5489 553f5703acec35716a91e70af5d2af38 { 'aliquot_tag': 'DUP_b852bfc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } -C3N-01524.DUP_b852bfc1.RNA-Seq.R2_L003.T C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 200519_UNC31-K00269_0279_AHH5VTBBXY_CCGTGAAG-CAGTGGAT_S10_L003_R2_001.fastq.gz 4532509428 FASTQ R2_L003 unaligned CPTAC3 8a444662-4d13-445e-9499-f11dbae935da 0ca134e1878eb900adc5b861323fdd0d { 'aliquot_tag': 'DUP_b852bfc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01524.DUP_b852bfc1.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 5786482a-c89b-4653-80b6-c5ac1eb4fb28.rna_seq.genomic.gdc_realn.bam 8182461616 BAM genomic harmonized CPTAC3 ede4380c-70c9-4e68-b3e5-ed9154f76cc7 c33632568542632549d2216566a5fdde { 'aliquot_tag': 'DUP_b852bfc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } +C3N-01524.DUP_b852bfc1.RNA-Seq.R1_L003.T C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 200519_UNC31-K00269_0279_AHH5VTBBXY_CCGTGAAG-CAGTGGAT_S10_L003_R1_001.fastq.gz 3834752470 FASTQ R1_L003 unaligned CPTAC3 8af7e4df-ca69-471b-a47f-2d6a3a9a5489 553f5703acec35716a91e70af5d2af38 { 'aliquot_tag': 'DUP_b852bfc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R1', 'lane': 'L003' } +C3N-01524.DUP_b852bfc1.RNA-Seq.R2_L003.T C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 200519_UNC31-K00269_0279_AHH5VTBBXY_CCGTGAAG-CAGTGGAT_S10_L003_R2_001.fastq.gz 4532509428 FASTQ R2_L003 unaligned CPTAC3 8a444662-4d13-445e-9499-f11dbae935da 0ca134e1878eb900adc5b861323fdd0d { 'aliquot_tag': 'DUP_b852bfc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot', 'read': 'R2', 'lane': 'L003' } C3N-01524.DUP_b852bfc1.RNA-Seq.transcriptome.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077300006 5786482a-c89b-4653-80b6-c5ac1eb4fb28.rna_seq.transcriptome.gdc_realn.bam 10034806326 BAM transcriptome harmonized CPTAC3 0e9ea75b-a7d0-48fe-8d9b-773e5a933517 c8210795c75e49485f9806d31f081b24 { 'aliquot_tag': 'DUP_b852bfc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01524.DUP_eea11384.MethArray.Green.T C3N-01524 CCRCC Methylation Array tumor CPT0077290009 204367490048_R01C01_Grn.idat 13677885 IDAT Green NA CPTAC3 2c45f520-b5f7-4cbd-9e95-a99a7861d947 ee20413350470b4a22e5f61a3b4c2b34 { 'aliquot_tag': 'DUP_eea11384', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } C3N-01524.DUP_eea11384.MethArray.Red.T C3N-01524 CCRCC Methylation Array tumor CPT0077290009 204367490048_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 2f4dcc6c-c9cb-4452-b793-4901db2f867a f7af3a8921594fed9ddd711db8161f00 { 'aliquot_tag': 'DUP_eea11384', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: CCRCC Tumor heterogeneity study aliquot' } @@ -26233,12 +28187,12 @@ C3N-01524.miRNA-Seq.T C3N-01524 CCRCC miRNA-Seq tumor CPT0077310006 181113_UNC31 C3N-01524.miRNA-Seq.T.hg38 C3N-01524 CCRCC miRNA-Seq tumor CPT0077310006 4ee095a5-09ab-4479-82b4-e5195ddb484b_mirnaseq_gdc_realn.bam 271406534 BAM harmonized CPTAC3 b36df476-04ad-4d25-a971-b560d668a830 facd033bb08048a363458250964aa4b4 { 'aliquot_tag': 'ALQ_85329671', 'gdc_sample_type': 'Primary Tumor' } C3N-01524.RNA-Seq.chimeric.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 81956631-f99d-4550-8036-0987863e5285.rna_seq.chimeric.gdc_realn.bam 87438298 BAM chimeric harmonized CPTAC3 d2d5c2c1-cf9e-468f-8639-3fa5e8e54a26 c6e6389f2549a5890b6742083bdb3bb1 { 'aliquot_tag': 'ALQ_c292eca1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01524.RNA-Seq.chimeric.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 c38eb27c-b97b-4b56-b48c-43542a3ae54e.rna_seq.chimeric.gdc_realn.bam 154798513 BAM chimeric harmonized CPTAC3 e0f2dab2-3f82-46bd-8370-4b52e4502619 68b8584996b2a7741a257dcb66169f92 { 'aliquot_tag': 'ALQ_85329671', 'gdc_sample_type': 'Primary Tumor' } -C3N-01524.RNA-Seq.genomic.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 81956631-f99d-4550-8036-0987863e5285.rna_seq.genomic.gdc_realn.bam 7508743373 BAM genomic harmonized CPTAC3 6a322693-28ba-4f24-89dc-8223d5ac036b 29da033281f04856ca62bf4501ddd73d { 'aliquot_tag': 'ALQ_c292eca1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01524.RNA-Seq.genomic.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 81956631-f99d-4550-8036-0987863e5285.rna_seq.genomic.gdc_realn.bam 7508743373 BAM genomic harmonized CPTAC3 be397fe8-24ef-4c88-996d-619315b424da 29da033281f04856ca62bf4501ddd73d { 'aliquot_tag': 'ALQ_c292eca1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01524.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 c38eb27c-b97b-4b56-b48c-43542a3ae54e.rna_seq.genomic.gdc_realn.bam 7691435230 BAM genomic harmonized CPTAC3 44d5e831-3d26-472c-a5e3-fd6fd15461bd 179c40772565cae2fbb091c9edd8ef99 { 'aliquot_tag': 'ALQ_85329671', 'gdc_sample_type': 'Primary Tumor' } -C3N-01524.RNA-Seq.R1_L002.A C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGGCC_S5_L002_R1_001.fastq.gz 3655993717 FASTQ R1_L002 unaligned CPTAC3 fa8f236e-200e-46e4-8007-936910f8863a 705fc161d5a09d1a8060276190cb9ec9 { 'aliquot_tag': 'ALQ_c292eca1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01524.RNA-Seq.R1_L007.T C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L007_R1_001.fastq.gz 3725590065 FASTQ R1_L007 unaligned CPTAC3 5a150b59-3d3c-4be6-9c89-f8067a652e60 8ec17f8bfba6ee864acfe8d00fe51b25 { 'aliquot_tag': 'ALQ_85329671', 'gdc_sample_type': 'Primary Tumor' } -C3N-01524.RNA-Seq.R2_L002.A C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGGCC_S5_L002_R2_001.fastq.gz 4048304952 FASTQ R2_L002 unaligned CPTAC3 77f448c3-5a83-4fea-95c9-8c999c378f49 1ecbc8ab6ca6487ac833b5fabb94d447 { 'aliquot_tag': 'ALQ_c292eca1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01524.RNA-Seq.R2_L007.T C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L007_R2_001.fastq.gz 4045324111 FASTQ R2_L007 unaligned CPTAC3 e12775ce-0aac-444a-8f8f-83eea65b1ce5 39c898bdf495b982d2d9da907feeeab9 { 'aliquot_tag': 'ALQ_85329671', 'gdc_sample_type': 'Primary Tumor' } +C3N-01524.RNA-Seq.R1_L002.A C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGGCC_S5_L002_R1_001.fastq.gz 3655993717 FASTQ R1_L002 unaligned CPTAC3 fa8f236e-200e-46e4-8007-936910f8863a 705fc161d5a09d1a8060276190cb9ec9 { 'aliquot_tag': 'ALQ_c292eca1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-01524.RNA-Seq.R1_L007.T C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L007_R1_001.fastq.gz 3725590065 FASTQ R1_L007 unaligned CPTAC3 5a150b59-3d3c-4be6-9c89-f8067a652e60 8ec17f8bfba6ee864acfe8d00fe51b25 { 'aliquot_tag': 'ALQ_85329671', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01524.RNA-Seq.R2_L002.A C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 171212_UNC31-K00269_0102_AHN5MMBBXX_GTGGCC_S5_L002_R2_001.fastq.gz 4048304952 FASTQ R2_L002 unaligned CPTAC3 77f448c3-5a83-4fea-95c9-8c999c378f49 1ecbc8ab6ca6487ac833b5fabb94d447 { 'aliquot_tag': 'ALQ_c292eca1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-01524.RNA-Seq.R2_L007.T C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L007_R2_001.fastq.gz 4045324111 FASTQ R2_L007 unaligned CPTAC3 e12775ce-0aac-444a-8f8f-83eea65b1ce5 39c898bdf495b982d2d9da907feeeab9 { 'aliquot_tag': 'ALQ_85329671', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01524.RNA-Seq.transcriptome.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal CPT0077320006 81956631-f99d-4550-8036-0987863e5285.rna_seq.transcriptome.gdc_realn.bam 8223916750 BAM transcriptome harmonized CPTAC3 4392e372-3aff-4c7b-9c52-86163dd904b4 4e51275439ee0354e6ddfe6bc60ccb03 { 'aliquot_tag': 'ALQ_c292eca1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01524.RNA-Seq.transcriptome.T.hg38 C3N-01524 CCRCC RNA-Seq tumor CPT0077310006 c38eb27c-b97b-4b56-b48c-43542a3ae54e.rna_seq.transcriptome.gdc_realn.bam 10600808893 BAM transcriptome harmonized CPTAC3 50316fff-1696-43f8-a9a8-d36b7c9aaec7 a23949d1c7f5e3a1b0d6a8077d8764cb { 'aliquot_tag': 'ALQ_85329671', 'gdc_sample_type': 'Primary Tumor' } C3N-01524.WGS.A C3N-01524 CCRCC WGS tissue_normal CPT0077320009 CPT0077320009.WholeGenome.RP-1303.bam 64244058141 BAM aligned CPTAC3 506c0a87-df32-498b-923b-6cff4399e114 e96e847d75c9a8995cbbf9ac057f059c { 'aliquot_tag': 'ALQ_522df130', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -26265,37 +28219,37 @@ C3N-01525.DUP_65d68839.WGS.T C3N-01525 UCEC WGS tumor CPT0095890077 CPT009589007 C3N-01525.DUP_65d68839.WGS.T.hg38 C3N-01525 UCEC WGS tumor CPT0095890077 a0a8413c-e99e-4913-97f2-bbfd8e059eac_wgs_gdc_realn.bam 107659002653 BAM harmonized CPTAC3 ba9bfacd-e671-4d39-92bb-aa9dbc1a306e b84dcbd5f30279fd651159842b341c00 { 'aliquot_tag': 'DUP_65d68839', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_65d68839.WXS.T C3N-01525 UCEC WXS tumor CPT0095890077 CPT0095890077.WholeExome.RP-1303.bam 23446043722 BAM aligned CPTAC3 82102bee-764b-4a07-9824-93425c1acb43 924c2fc6028ae7899db1c05bdd800a16 { 'aliquot_tag': 'DUP_65d68839', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_65d68839.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890077 a0a8413c-e99e-4913-97f2-bbfd8e059eac_wxs_gdc_realn.bam 32264744686 BAM harmonized CPTAC3 4b5fb1dc-7cfe-4b5b-9194-c71eea8c2129 76ff92b890cd42ed82a04aee89c7044f { 'aliquot_tag': 'DUP_65d68839', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_86cc550d.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 2286c6b4-f478-4013-8871-a242ff886cc4.rna_seq.chimeric.gdc_realn.bam 129832391 BAM chimeric harmonized CPTAC3 660991bd-69a8-4916-8ed2-0111dc1513f8 b4541244afb2786e368e40cd78a95a52 { 'aliquot_tag': 'DUP_86cc550d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_86cc550d.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 2286c6b4-f478-4013-8871-a242ff886cc4.rna_seq.genomic.gdc_realn.bam 8732479053 BAM genomic harmonized CPTAC3 05941dee-6f23-457b-be00-894b54c29213 76c81fb1727c8fd8bc6f31cfcd615b03 { 'aliquot_tag': 'DUP_86cc550d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_86cc550d.RNA-Seq.R1_L002.T C3N-01525 UCEC RNA-Seq tumor CPT0095870046 200212_UNC31-K00269_0265_BHGCWGBBXY_TCTGTTGG-TCGAATGG_S7_L002_R1_001.fastq.gz 3529331134 FASTQ R1_L002 unaligned CPTAC3 9fa3175c-9bb4-4dda-adba-95a01bf8173e c45541178d2f3a18221bf30166a28fde { 'aliquot_tag': 'DUP_86cc550d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_86cc550d.RNA-Seq.R2_L002.T C3N-01525 UCEC RNA-Seq tumor CPT0095870046 200212_UNC31-K00269_0265_BHGCWGBBXY_TCTGTTGG-TCGAATGG_S7_L002_R2_001.fastq.gz 3841105305 FASTQ R2_L002 unaligned CPTAC3 77fc7ff3-05e0-4893-a795-e691b77d746b 7139602946c1f6f8e2c8b25331ddf375 { 'aliquot_tag': 'DUP_86cc550d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_86cc550d.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 2286c6b4-f478-4013-8871-a242ff886cc4.rna_seq.transcriptome.gdc_realn.bam 2409492349 BAM transcriptome harmonized CPTAC3 3fd8d9db-1bf4-4371-aeef-f66735976384 2b023c43db465e8e74f8b670936d00c4 { 'aliquot_tag': 'DUP_86cc550d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_86cc550d.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 e88f1428-b80b-4597-8631-c61ef59b5f48.rna_seq.chimeric.gdc_realn.bam 129831164 BAM chimeric harmonized CPTAC3 578ec35f-b113-4290-95b8-4499f194ccc2 399943a82f19dbdc521804fc0e80ae03 { 'aliquot_tag': 'DUP_86cc550d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_86cc550d.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 e88f1428-b80b-4597-8631-c61ef59b5f48.rna_seq.genomic.gdc_realn.bam 8732983752 BAM genomic harmonized CPTAC3 cbec2155-f475-4d39-b5c2-e28c797d190b 77726a525f5bc09ccbd1a45540b47cb8 { 'aliquot_tag': 'DUP_86cc550d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_86cc550d.RNA-Seq.R1_L002.T C3N-01525 UCEC RNA-Seq tumor CPT0095870046 200212_UNC31-K00269_0265_BHGCWGBBXY_TCTGTTGG-TCGAATGG_S7_L002_R1_001.fastq.gz 3529331134 FASTQ R1_L002 unaligned CPTAC3 9fa3175c-9bb4-4dda-adba-95a01bf8173e c45541178d2f3a18221bf30166a28fde { 'aliquot_tag': 'DUP_86cc550d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L002' } +C3N-01525.DUP_86cc550d.RNA-Seq.R2_L002.T C3N-01525 UCEC RNA-Seq tumor CPT0095870046 200212_UNC31-K00269_0265_BHGCWGBBXY_TCTGTTGG-TCGAATGG_S7_L002_R2_001.fastq.gz 3841105305 FASTQ R2_L002 unaligned CPTAC3 77fc7ff3-05e0-4893-a795-e691b77d746b 7139602946c1f6f8e2c8b25331ddf375 { 'aliquot_tag': 'DUP_86cc550d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L002' } +C3N-01525.DUP_86cc550d.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870046 e88f1428-b80b-4597-8631-c61ef59b5f48.rna_seq.transcriptome.gdc_realn.bam 2705133091 BAM transcriptome harmonized CPTAC3 2265916e-fe83-410e-b1d1-bcb7f924ca34 6ea6ffba815af286e7fa7d3057d28fd2 { 'aliquot_tag': 'DUP_86cc550d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_8bd8e915.WXS.T C3N-01525 UCEC WXS tumor CPT0095890075 CPT0095890075.WholeExome.RP-1303.bam 26480060080 BAM aligned CPTAC3 d1702bbe-9ae5-41f1-9043-17337ad9b89e 1f354041484648271637997b0c0b0368 { 'aliquot_tag': 'DUP_8bd8e915', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_8bd8e915.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095890075 dd2dacf0-bf50-42ce-acf7-6d2f7f3248b1_wxs_gdc_realn.bam 36714646517 BAM harmonized CPTAC3 bca2179e-c656-47a8-8ee6-b48390538b46 edfa01dd0999a1da6de4830eccbb692c { 'aliquot_tag': 'DUP_8bd8e915', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_92c3d854.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 92f35e98-dd14-4024-8a1b-e50cc2a5a775.rna_seq.chimeric.gdc_realn.bam 186736711 BAM chimeric harmonized CPTAC3 81a4c6be-beb5-4f89-b227-61a8b42de82b 79f307e02179866dfe508c1fb75c2e44 { 'aliquot_tag': 'DUP_92c3d854', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_92c3d854.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 92f35e98-dd14-4024-8a1b-e50cc2a5a775.rna_seq.genomic.gdc_realn.bam 7430879927 BAM genomic harmonized CPTAC3 af35212f-41b8-454d-888f-eca9b052e41a ccb9028f0387949618ab904f0afeeb9c { 'aliquot_tag': 'DUP_92c3d854', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_92c3d854.RNA-Seq.R1_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890065 200212_UNC31-K00269_0265_BHGCWGBBXY_CTGCTTCC-GATAGATC_S10_L003_R1_001.fastq.gz 3146864941 FASTQ R1_L003 unaligned CPTAC3 45bb7f89-e151-4eda-a814-544c0fd0549c 4ee7e01c9957485e2b20c597eb1cdcbf { 'aliquot_tag': 'DUP_92c3d854', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_92c3d854.RNA-Seq.R2_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890065 200212_UNC31-K00269_0265_BHGCWGBBXY_CTGCTTCC-GATAGATC_S10_L003_R2_001.fastq.gz 3493627102 FASTQ R2_L003 unaligned CPTAC3 795da625-4686-4f20-ba6c-313b56083ebc dcad7c01e5ea17fb65435c4a516ce422 { 'aliquot_tag': 'DUP_92c3d854', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_92c3d854.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 92f35e98-dd14-4024-8a1b-e50cc2a5a775.rna_seq.transcriptome.gdc_realn.bam 5078383099 BAM transcriptome harmonized CPTAC3 7f0ad123-01ac-4d85-9d27-fd7fc0ddae46 61891423d08f2846d3bd8465d6960e5f { 'aliquot_tag': 'DUP_92c3d854', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_92c3d854.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 24b63ec7-4738-48c0-880a-5149b8521add.rna_seq.chimeric.gdc_realn.bam 186727152 BAM chimeric harmonized CPTAC3 9a18ee9e-6fc7-405d-aa5c-1d6988980234 48d849917a899e3354f1d0b8b17244b0 { 'aliquot_tag': 'DUP_92c3d854', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_92c3d854.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 24b63ec7-4738-48c0-880a-5149b8521add.rna_seq.genomic.gdc_realn.bam 7431541643 BAM genomic harmonized CPTAC3 6201e2cf-3016-4244-8e98-3e86f62667aa ba9065d2e378b5f99f825d8187e32a59 { 'aliquot_tag': 'DUP_92c3d854', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_92c3d854.RNA-Seq.R1_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890065 200212_UNC31-K00269_0265_BHGCWGBBXY_CTGCTTCC-GATAGATC_S10_L003_R1_001.fastq.gz 3146864941 FASTQ R1_L003 unaligned CPTAC3 45bb7f89-e151-4eda-a814-544c0fd0549c 4ee7e01c9957485e2b20c597eb1cdcbf { 'aliquot_tag': 'DUP_92c3d854', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L003' } +C3N-01525.DUP_92c3d854.RNA-Seq.R2_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890065 200212_UNC31-K00269_0265_BHGCWGBBXY_CTGCTTCC-GATAGATC_S10_L003_R2_001.fastq.gz 3493627102 FASTQ R2_L003 unaligned CPTAC3 795da625-4686-4f20-ba6c-313b56083ebc dcad7c01e5ea17fb65435c4a516ce422 { 'aliquot_tag': 'DUP_92c3d854', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L003' } +C3N-01525.DUP_92c3d854.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890065 24b63ec7-4738-48c0-880a-5149b8521add.rna_seq.transcriptome.gdc_realn.bam 5736426442 BAM transcriptome harmonized CPTAC3 a39db008-d470-422a-9dc6-550cd5a9bfc4 422792d35e5f6ed25040f1006a7995b6 { 'aliquot_tag': 'DUP_92c3d854', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_98baa055.WXS.T C3N-01525 UCEC WXS tumor CPT0095870052 CPT0095870052.WholeExome.RP-1303.bam 21791915492 BAM aligned CPTAC3 415658f6-8f36-4d3d-9990-7fe5a7167635 d961308def9c767931fac91e5fbf0f3e { 'aliquot_tag': 'DUP_98baa055', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_98baa055.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095870052 24b02a9f-2789-4007-a627-7d1790062aa2_wxs_gdc_realn.bam 29891291715 BAM harmonized CPTAC3 5fbca83b-75e5-486f-8c72-17d72092cf20 29b94b7fee13e2cfe84cf33c628c2baf { 'aliquot_tag': 'DUP_98baa055', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_b058c7bc.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 c27ee608-ae67-4e00-b08a-d7c24ef7a41b.rna_seq.chimeric.gdc_realn.bam 144252981 BAM chimeric harmonized CPTAC3 0d6d51aa-d592-419f-8d98-a0e2665b5a5f 3df1333814037a0711643596d27d712e { 'aliquot_tag': 'DUP_b058c7bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_b058c7bc.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 c27ee608-ae67-4e00-b08a-d7c24ef7a41b.rna_seq.genomic.gdc_realn.bam 8798379510 BAM genomic harmonized CPTAC3 7687c50c-1c2c-4d36-a432-754213f0524e 736695652af4aee8a5a6f2de8b0737a1 { 'aliquot_tag': 'DUP_b058c7bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_b058c7bc.RNA-Seq.R1_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890059 200212_UNC31-K00269_0265_BHGCWGBBXY_AACTGTAG-ACGCCGCA_S8_L003_R1_001.fastq.gz 3907360321 FASTQ R1_L003 unaligned CPTAC3 1e3ad2be-2624-4e61-b8c3-931c8dca073b 1ec1d3c5e1b433299c606c8d220ce065 { 'aliquot_tag': 'DUP_b058c7bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_b058c7bc.RNA-Seq.R2_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890059 200212_UNC31-K00269_0265_BHGCWGBBXY_AACTGTAG-ACGCCGCA_S8_L003_R2_001.fastq.gz 4336799956 FASTQ R2_L003 unaligned CPTAC3 8e95d8e9-59b6-4d1a-9210-4056896e3e03 49da2981cbca809be2e8adeba7a0c92a { 'aliquot_tag': 'DUP_b058c7bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_b058c7bc.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 c27ee608-ae67-4e00-b08a-d7c24ef7a41b.rna_seq.transcriptome.gdc_realn.bam 6346061612 BAM transcriptome harmonized CPTAC3 e8d0a05d-b075-4991-973a-f0863a210e0c 7577d141552a895007b15647d28aeba0 { 'aliquot_tag': 'DUP_b058c7bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_ca74df7.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 38ea6bdf-208c-4388-a828-74ddbca9ceeb.rna_seq.chimeric.gdc_realn.bam 151535952 BAM chimeric harmonized CPTAC3 8d80b4ae-b27f-4b52-922f-0808636de385 832783ee9ddb0c12ea8b2588b858af78 { 'aliquot_tag': 'DUP_ca74df7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_ca74df7.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 38ea6bdf-208c-4388-a828-74ddbca9ceeb.rna_seq.genomic.gdc_realn.bam 9006004323 BAM genomic harmonized CPTAC3 0230e27d-7bca-4a63-ae2c-e834c2f0a523 b79bfd6423f3b5a57ceaeb954e294c95 { 'aliquot_tag': 'DUP_ca74df7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_ca74df7.RNA-Seq.R1_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890062 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTCACGA-GTATTATG_S9_L003_R1_001.fastq.gz 3712958149 FASTQ R1_L003 unaligned CPTAC3 3b7b0a34-b123-419b-9ac2-5565acc07871 0ef021b0c079535ff65e8030a5122111 { 'aliquot_tag': 'DUP_ca74df7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_ca74df7.RNA-Seq.R2_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890062 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTCACGA-GTATTATG_S9_L003_R2_001.fastq.gz 4058507606 FASTQ R2_L003 unaligned CPTAC3 f2551767-5466-4543-8dca-29bd5fac5227 558414e7a2f826d7588fedd4604f4e42 { 'aliquot_tag': 'DUP_ca74df7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_ca74df7.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 38ea6bdf-208c-4388-a828-74ddbca9ceeb.rna_seq.transcriptome.gdc_realn.bam 4623853295 BAM transcriptome harmonized CPTAC3 a6b22aae-f021-4b87-b294-921cb56c2723 a1beb09e73e1d4ce85b3107a6e219ba2 { 'aliquot_tag': 'DUP_ca74df7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_b058c7bc.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 5df55a42-a02c-4e4d-a870-4b1434c343be.rna_seq.chimeric.gdc_realn.bam 144239742 BAM chimeric harmonized CPTAC3 55192e90-fb6f-4611-b41f-b5d960b91d07 1095b2879b737367c409c0f223012088 { 'aliquot_tag': 'DUP_b058c7bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_b058c7bc.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 5df55a42-a02c-4e4d-a870-4b1434c343be.rna_seq.genomic.gdc_realn.bam 8799061097 BAM genomic harmonized CPTAC3 74429a0d-ad0f-41e2-aa71-62be18c994f7 83f2be064ed3e79f777f4b1d6c7d1446 { 'aliquot_tag': 'DUP_b058c7bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_b058c7bc.RNA-Seq.R1_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890059 200212_UNC31-K00269_0265_BHGCWGBBXY_AACTGTAG-ACGCCGCA_S8_L003_R1_001.fastq.gz 3907360321 FASTQ R1_L003 unaligned CPTAC3 1e3ad2be-2624-4e61-b8c3-931c8dca073b 1ec1d3c5e1b433299c606c8d220ce065 { 'aliquot_tag': 'DUP_b058c7bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L003' } +C3N-01525.DUP_b058c7bc.RNA-Seq.R2_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890059 200212_UNC31-K00269_0265_BHGCWGBBXY_AACTGTAG-ACGCCGCA_S8_L003_R2_001.fastq.gz 4336799956 FASTQ R2_L003 unaligned CPTAC3 8e95d8e9-59b6-4d1a-9210-4056896e3e03 49da2981cbca809be2e8adeba7a0c92a { 'aliquot_tag': 'DUP_b058c7bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L003' } +C3N-01525.DUP_b058c7bc.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890059 5df55a42-a02c-4e4d-a870-4b1434c343be.rna_seq.transcriptome.gdc_realn.bam 7119069658 BAM transcriptome harmonized CPTAC3 b790e519-732f-41ed-a455-2dfcb652fff8 92031817c42ea150063e2358eb1af3a0 { 'aliquot_tag': 'DUP_b058c7bc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_ca74df7.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 f8b11100-fd65-466a-97dc-ab13b618bb17.rna_seq.chimeric.gdc_realn.bam 151518130 BAM chimeric harmonized CPTAC3 31c245f5-6916-4733-a6dc-a833d946c171 3ee5fb7ecdaee1a9261c331d214b0595 { 'aliquot_tag': 'DUP_ca74df7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_ca74df7.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 f8b11100-fd65-466a-97dc-ab13b618bb17.rna_seq.genomic.gdc_realn.bam 9006773662 BAM genomic harmonized CPTAC3 33243fa1-9041-4d28-83ce-e81ad950dc7b 2bd08b8291946488e5b851ecec142c68 { 'aliquot_tag': 'DUP_ca74df7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_ca74df7.RNA-Seq.R1_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890062 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTCACGA-GTATTATG_S9_L003_R1_001.fastq.gz 3712958149 FASTQ R1_L003 unaligned CPTAC3 3b7b0a34-b123-419b-9ac2-5565acc07871 0ef021b0c079535ff65e8030a5122111 { 'aliquot_tag': 'DUP_ca74df7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L003' } +C3N-01525.DUP_ca74df7.RNA-Seq.R2_L003.T C3N-01525 UCEC RNA-Seq tumor CPT0095890062 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTCACGA-GTATTATG_S9_L003_R2_001.fastq.gz 4058507606 FASTQ R2_L003 unaligned CPTAC3 f2551767-5466-4543-8dca-29bd5fac5227 558414e7a2f826d7588fedd4604f4e42 { 'aliquot_tag': 'DUP_ca74df7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L003' } +C3N-01525.DUP_ca74df7.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095890062 f8b11100-fd65-466a-97dc-ab13b618bb17.rna_seq.transcriptome.gdc_realn.bam 5229709088 BAM transcriptome harmonized CPTAC3 8938f76d-7ce4-4dc7-b6b7-0bed77a9366b 1b34a8194e4129c30f8bb25b31108aaa { 'aliquot_tag': 'DUP_ca74df7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_efbd90c3.WXS.T C3N-01525 UCEC WXS tumor CPT0095870053 CPT0095870053.WholeExome.RP-1303.bam 16912365183 BAM aligned CPTAC3 0b5550f1-4829-487d-8cb3-bbf13008dc5b dea42f64c6cb77ce4850831f539ada21 { 'aliquot_tag': 'DUP_efbd90c3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_efbd90c3.WXS.T.hg38 C3N-01525 UCEC WXS tumor CPT0095870053 2144d11e-2194-494d-8354-e5014f9ec937_wxs_gdc_realn.bam 23224598583 BAM harmonized CPTAC3 52d88fe4-04b8-43bb-b4d6-8d5056b2e015 edc54281ed972f2ceb53c2b5d679c88d { 'aliquot_tag': 'DUP_efbd90c3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_f6a6a182.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 ead1bfc9-3bd1-4820-a632-fae0047f3094.rna_seq.chimeric.gdc_realn.bam 90015700 BAM chimeric harmonized CPTAC3 e86bb499-3378-4672-8829-52f03b93058a e3eb01bbbbbf5f629c6a9f16f82607a4 { 'aliquot_tag': 'DUP_f6a6a182', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_f6a6a182.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 ead1bfc9-3bd1-4820-a632-fae0047f3094.rna_seq.genomic.gdc_realn.bam 8718580467 BAM genomic harmonized CPTAC3 f9466127-30ea-49ef-8095-f5a8edfb904b 91e0a8119f3ce5dadd03f8eb41fae04a { 'aliquot_tag': 'DUP_f6a6a182', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_f6a6a182.RNA-Seq.R1_L002.T C3N-01525 UCEC RNA-Seq tumor CPT0095870043 200212_UNC31-K00269_0265_BHGCWGBBXY_CTCACCAA-CTAGGCAA_S6_L002_R1_001.fastq.gz 3585068661 FASTQ R1_L002 unaligned CPTAC3 4adddeac-120c-4141-a6f4-b05e33665f70 43ff86c137d00a9976e28006b10bd981 { 'aliquot_tag': 'DUP_f6a6a182', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_f6a6a182.RNA-Seq.R2_L002.T C3N-01525 UCEC RNA-Seq tumor CPT0095870043 200212_UNC31-K00269_0265_BHGCWGBBXY_CTCACCAA-CTAGGCAA_S6_L002_R2_001.fastq.gz 3987437061 FASTQ R2_L002 unaligned CPTAC3 75a7a693-b6db-4d1a-8ac8-878278053533 d42865f60f98c1d600ef8cf7901f82ed { 'aliquot_tag': 'DUP_f6a6a182', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-01525.DUP_f6a6a182.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 ead1bfc9-3bd1-4820-a632-fae0047f3094.rna_seq.transcriptome.gdc_realn.bam 4426506282 BAM transcriptome harmonized CPTAC3 c2f2d44a-2139-46c3-b58c-15524aee5f08 1b89ded0709f8555468bf09f48c46763 { 'aliquot_tag': 'DUP_f6a6a182', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_f6a6a182.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 4764f020-854b-4d33-9e17-2ae52c61a47c.rna_seq.chimeric.gdc_realn.bam 90013996 BAM chimeric harmonized CPTAC3 43203b7a-d562-4a08-83b5-172d7d52c8d2 27d839f89ec28ade9fd89563c5443205 { 'aliquot_tag': 'DUP_f6a6a182', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_f6a6a182.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 4764f020-854b-4d33-9e17-2ae52c61a47c.rna_seq.genomic.gdc_realn.bam 8719173405 BAM genomic harmonized CPTAC3 b597082a-dcca-4d3a-8968-f5cc4c1f505f 2f9107cc861d90a6cd593097fdb66739 { 'aliquot_tag': 'DUP_f6a6a182', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-01525.DUP_f6a6a182.RNA-Seq.R1_L002.T C3N-01525 UCEC RNA-Seq tumor CPT0095870043 200212_UNC31-K00269_0265_BHGCWGBBXY_CTCACCAA-CTAGGCAA_S6_L002_R1_001.fastq.gz 3585068661 FASTQ R1_L002 unaligned CPTAC3 4adddeac-120c-4141-a6f4-b05e33665f70 43ff86c137d00a9976e28006b10bd981 { 'aliquot_tag': 'DUP_f6a6a182', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L002' } +C3N-01525.DUP_f6a6a182.RNA-Seq.R2_L002.T C3N-01525 UCEC RNA-Seq tumor CPT0095870043 200212_UNC31-K00269_0265_BHGCWGBBXY_CTCACCAA-CTAGGCAA_S6_L002_R2_001.fastq.gz 3987437061 FASTQ R2_L002 unaligned CPTAC3 75a7a693-b6db-4d1a-8ac8-878278053533 d42865f60f98c1d600ef8cf7901f82ed { 'aliquot_tag': 'DUP_f6a6a182', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L002' } +C3N-01525.DUP_f6a6a182.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095870043 4764f020-854b-4d33-9e17-2ae52c61a47c.rna_seq.transcriptome.gdc_realn.bam 4964978370 BAM transcriptome harmonized CPTAC3 18b45c89-ad9c-4d6d-81d7-eb71f7b233d2 49e69519b448c656b137e93ece6154e9 { 'aliquot_tag': 'DUP_f6a6a182', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_fbb21d9a.WGS.T C3N-01525 UCEC WGS tumor CPT0095890070 CPT0095890070.WholeGenome.RP-2158.bam 28398963253 BAM aligned CPTAC3 09d8902f-682a-4991-b0e1-621ec52bed2e 8bf2fd7f96ff96d49ded6e35d3fba41d { 'aliquot_tag': 'DUP_fbb21d9a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_fbb21d9a.WGS.T.hg38 C3N-01525 UCEC WGS tumor CPT0095890070 ae065acd-6d37-4cce-9711-f1f08861cd33_wgs_gdc_realn.bam 84193932648 BAM harmonized CPTAC3 2cc1e692-94b8-45a2-a8a0-cd2c311800e6 229e2f81ba36be29aaeb764db0f62139 { 'aliquot_tag': 'DUP_fbb21d9a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-01525.DUP_fbb21d9a.WXS.T C3N-01525 UCEC WXS tumor CPT0095890070 CPT0095890070.WholeExome.RP-1303.bam 19159112452 BAM aligned CPTAC3 6275b4ea-7303-474d-b2ff-688ff0ddc0dd 035c1c2e058694fa1f51862fecb56ee7 { 'aliquot_tag': 'DUP_fbb21d9a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } @@ -26310,18 +28264,21 @@ C3N-01525.miRNA-Seq.A C3N-01525 UCEC miRNA-Seq tissue_normal CPT0095900009 18111 C3N-01525.miRNA-Seq.A.hg38 C3N-01525 UCEC miRNA-Seq tissue_normal CPT0095900009 e25c0ecf-b634-4ae0-b11d-64ef7250f215_mirnaseq_gdc_realn.bam 320603950 BAM harmonized CPTAC3 87e5eb1a-e437-44ba-a1b4-0de6f8342c0f 6f8d832fa3190a2138a680ec530c8ae6 { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01525.miRNA-Seq.T C3N-01525 UCEC miRNA-Seq tumor CPT0095880006 181108_UNC31-K00269_0163_BH23TVBBXY_GTTTCG_S21_L008_R1_001.unaln.bam 203340092 BAM unaligned CPTAC3 03688d58-6cf8-4e67-8f32-63265f9878ec d42a1f8f53b7f5d6d862804a9f5d46b9 { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor' } C3N-01525.miRNA-Seq.T.hg38 C3N-01525 UCEC miRNA-Seq tumor CPT0095880006 b8288b74-d636-485b-ace0-684bc83b8175_mirnaseq_gdc_realn.bam 225028917 BAM harmonized CPTAC3 1726a0d7-0c4b-4f15-9d7c-372edf2e73d8 9134e53d4901af10d5919e1acf909a8d { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01525.RNA-Seq.chimeric.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 1006d140-1743-453c-93ed-61d868f68808.rna_seq.chimeric.gdc_realn.bam 31325402 BAM chimeric harmonized CPTAC3 914726b6-7205-476c-9b2c-3d8f0d7578d8 4d13a4574913bd9185931a13f7b8a443 { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01525.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 8866d877-b81d-4001-928c-50fc0357b4a5.rna_seq.chimeric.gdc_realn.bam 72001080 BAM chimeric harmonized CPTAC3 36a9fc7d-519b-467d-9d60-b3e9ab128311 d1796ae7edb4648ab5edea8272b6541f { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01525.RNA-Seq.genomic.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 1006d140-1743-453c-93ed-61d868f68808.rna_seq.genomic.gdc_realn.bam 9243575563 BAM genomic harmonized CPTAC3 dbba5ada-9a0f-47a2-b001-08cc3f526b9f 755aa8f34184785866d8087e20ac1d3b { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01525.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 8866d877-b81d-4001-928c-50fc0357b4a5.rna_seq.genomic.gdc_realn.bam 8610630118 BAM genomic harmonized CPTAC3 47b66db8-0be8-4610-a30d-ec9e9ea8c145 01e38513d948092fd2f5342002d2050a { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01525.RNA-Seq.R1_L007.A C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 180606_UNC32-K00270_0097_AHVCKFBBXX_CTTGTA_S27_L007_R1_001.fastq.gz 3801524004 FASTQ R1_L007 unaligned CPTAC3 60d4d2d6-e06e-4e47-8114-072fabb42fd6 622598c17fbf66de8eece500c710a54a { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01525.RNA-Seq.R1_L008.T C3N-01525 UCEC RNA-Seq tumor CPT0095880006 171107_UNC32-K00270_0063_BHLNTCBBXX_TTAGGC_S63_L008_R1_001.fastq.gz 3760186423 FASTQ R1_L008 unaligned CPTAC3 ea3cf705-6b2f-4777-8911-7348e171ab00 282045f8c42e0c03ee2cf1e99f72dc34 { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01525.RNA-Seq.R1_.T C3N-01525 UCEC RNA-Seq tumor CPT0095980001 20210729_P3_B9_WB7988-Plate3_S21_R1_001.fastq.gz 5637990199 FASTQ R1_ unaligned CPTAC3 a1451b01-248c-4285-963e-16c135adf598 81d3a64eac7d65b95b8c1cb079c97310 { 'aliquot_tag': 'ALQ_35c841de', 'gdc_sample_type': 'Primary Tumor' } -C3N-01525.RNA-Seq.R2_L007.A C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 180606_UNC32-K00270_0097_AHVCKFBBXX_CTTGTA_S27_L007_R2_001.fastq.gz 4006838452 FASTQ R2_L007 unaligned CPTAC3 b1878470-eeb5-4cd8-b802-ee18ced97730 29d47df9f015f40fd11c32faebba4bb7 { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01525.RNA-Seq.R2_L008.T C3N-01525 UCEC RNA-Seq tumor CPT0095880006 171107_UNC32-K00270_0063_BHLNTCBBXX_TTAGGC_S63_L008_R2_001.fastq.gz 4053079023 FASTQ R2_L008 unaligned CPTAC3 8a9c0d57-959d-4c5f-b922-750d72b0c8d5 17fe8b43bc6e8bcdad8c1aa45b3f9d0c { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01525.RNA-Seq.R2_.T C3N-01525 UCEC RNA-Seq tumor CPT0095980001 20210729_P3_B9_WB7988-Plate3_S21_R2_001.fastq.gz 5904919547 FASTQ R2_ unaligned CPTAC3 cb9b077f-8845-4efd-95a9-70b814ca2b7e e03568454399523eab470530ec38a015 { 'aliquot_tag': 'ALQ_35c841de', 'gdc_sample_type': 'Primary Tumor' } -C3N-01525.RNA-Seq.transcriptome.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 1006d140-1743-453c-93ed-61d868f68808.rna_seq.transcriptome.gdc_realn.bam 9597829501 BAM transcriptome harmonized CPTAC3 94c1726e-5cff-40e7-9f2b-a39144ca5f93 81c56e398f800bf6896429c3575db45e { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01525.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 8866d877-b81d-4001-928c-50fc0357b4a5.rna_seq.transcriptome.gdc_realn.bam 7481214700 BAM transcriptome harmonized CPTAC3 3152354c-9991-43ac-8d41-8fb5cb5e4ae7 f1532e129c4ac6f6eabe57e843f172b5 { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01525.RNA-Seq.chimeric.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 01012fb4-b7db-4dff-8114-023bc18d95d1.rna_seq.chimeric.gdc_realn.bam 31303373 BAM chimeric harmonized CPTAC3 87c3cad8-ac89-48f5-86a0-c42e66966751 144245516a0a54a0319afe87a88a2ed7 { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01525.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 c44693b4-86a9-4f4a-b3ee-c651368d2385.rna_seq.chimeric.gdc_realn.bam 71991431 BAM chimeric harmonized CPTAC3 26d3dc7c-a2ec-4fd4-9db0-6a63c381e6be 290dffdab3c5b49b641c68cf16fdd3e1 { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01525.RNA-Seq.chimeric.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095980001 3af34b63-ce7d-434b-b150-c9fc3c4e1996.rna_seq.chimeric.gdc_realn.bam 139842204 BAM chimeric harmonized CPTAC3 bd05e96b-d9ef-4425-9806-91a9bb364854 0496f7a18b286fdcd6c7dfb69da178b8 { 'aliquot_tag': 'ALQ_35c841de', 'gdc_sample_type': 'Primary Tumor' } +C3N-01525.RNA-Seq.genomic.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 01012fb4-b7db-4dff-8114-023bc18d95d1.rna_seq.genomic.gdc_realn.bam 9244695401 BAM genomic harmonized CPTAC3 c77de9e0-ab02-4aa5-b99e-c6ffdcda35ba 8788e53f1ebedbc6b14773db04c2f228 { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01525.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 c44693b4-86a9-4f4a-b3ee-c651368d2385.rna_seq.genomic.gdc_realn.bam 8611960259 BAM genomic harmonized CPTAC3 a6a086ee-2ea1-4e8d-b990-0cf2af6b03aa ab652e892ce9a787b59349276e35b0fd { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01525.RNA-Seq.genomic.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095980001 3af34b63-ce7d-434b-b150-c9fc3c4e1996.rna_seq.genomic.gdc_realn.bam 10033705698 BAM genomic harmonized CPTAC3 b05a6b36-5837-4dfd-b5a4-e58900f0107c 3f50417244d46aa534c845fc94d86fb9 { 'aliquot_tag': 'ALQ_35c841de', 'gdc_sample_type': 'Primary Tumor' } +C3N-01525.RNA-Seq.R1_L007.A C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 180606_UNC32-K00270_0097_AHVCKFBBXX_CTTGTA_S27_L007_R1_001.fastq.gz 3801524004 FASTQ R1_L007 unaligned CPTAC3 60d4d2d6-e06e-4e47-8114-072fabb42fd6 622598c17fbf66de8eece500c710a54a { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01525.RNA-Seq.R1_L008.T C3N-01525 UCEC RNA-Seq tumor CPT0095880006 171107_UNC32-K00270_0063_BHLNTCBBXX_TTAGGC_S63_L008_R1_001.fastq.gz 3760186423 FASTQ R1_L008 unaligned CPTAC3 ea3cf705-6b2f-4777-8911-7348e171ab00 282045f8c42e0c03ee2cf1e99f72dc34 { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01525.RNA-Seq.R2_L007.A C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 180606_UNC32-K00270_0097_AHVCKFBBXX_CTTGTA_S27_L007_R2_001.fastq.gz 4006838452 FASTQ R2_L007 unaligned CPTAC3 b1878470-eeb5-4cd8-b802-ee18ced97730 29d47df9f015f40fd11c32faebba4bb7 { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01525.RNA-Seq.R2_L008.T C3N-01525 UCEC RNA-Seq tumor CPT0095880006 171107_UNC32-K00270_0063_BHLNTCBBXX_TTAGGC_S63_L008_R2_001.fastq.gz 4053079023 FASTQ R2_L008 unaligned CPTAC3 8a9c0d57-959d-4c5f-b922-750d72b0c8d5 17fe8b43bc6e8bcdad8c1aa45b3f9d0c { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01525.RNA-Seq.T C3N-01525 UCEC RNA-Seq tumor CPT0095980001 20210729_P3_B9_WB7988-Plate3_S21_R1_001.fastq.gz 5637990199 FASTQ unaligned CPTAC3 a1451b01-248c-4285-963e-16c135adf598 81d3a64eac7d65b95b8c1cb079c97310 +C3N-01525.RNA-Seq.T C3N-01525 UCEC RNA-Seq tumor CPT0095980001 20210729_P3_B9_WB7988-Plate3_S21_R2_001.fastq.gz 5904919547 FASTQ unaligned CPTAC3 cb9b077f-8845-4efd-95a9-70b814ca2b7e e03568454399523eab470530ec38a015 +C3N-01525.RNA-Seq.transcriptome.A.hg38 C3N-01525 UCEC RNA-Seq tissue_normal CPT0095900009 01012fb4-b7db-4dff-8114-023bc18d95d1.rna_seq.transcriptome.gdc_realn.bam 10980079599 BAM transcriptome harmonized CPTAC3 ff73f225-5935-41a1-b3b1-0debffcaaf5d 4685d3b4e3d0e200ab38dd600a3326db { 'aliquot_tag': 'ALQ_b63822d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01525.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095880006 c44693b4-86a9-4f4a-b3ee-c651368d2385.rna_seq.transcriptome.gdc_realn.bam 8550228516 BAM transcriptome harmonized CPTAC3 b25ace4e-2b58-428f-90c6-a0416606ea55 6d67decd2a836aa9693789b10133a0a1 { 'aliquot_tag': 'ALQ_60f007d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01525.RNA-Seq.transcriptome.T.hg38 C3N-01525 UCEC RNA-Seq tumor CPT0095980001 3af34b63-ce7d-434b-b150-c9fc3c4e1996.rna_seq.transcriptome.gdc_realn.bam 5540806729 BAM transcriptome harmonized CPTAC3 d7763eb4-536c-4dc7-a93a-8ac549ebdbf9 eb30c2201035ed03082930b2759a4c76 { 'aliquot_tag': 'ALQ_35c841de', 'gdc_sample_type': 'Primary Tumor' } C3N-01525.WGS.A C3N-01525 UCEC WGS tissue_normal CPT0095900006 CPT0095900006.WholeGenome.RP-1303.bam 66675489743 BAM aligned CPTAC3 6fb78171-6661-48a1-b884-0dd47659cc23 7121cd62b1244f18f7e24b362ad41a8a { 'aliquot_tag': 'ALQ_9bdc9fbc', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01525.WGS.A.hg38 C3N-01525 UCEC WGS tissue_normal CPT0095900006 6636828c-15a6-483d-ade1-0d697874131a_wgs_gdc_realn.bam 98443324645 BAM harmonized CPTAC3 d282953d-5e60-457c-966c-f6233255e43f 37eeae0780cdba41710668339661f68a { 'aliquot_tag': 'ALQ_9bdc9fbc', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01525.WGS.N C3N-01525 UCEC WGS blood_normal CPT0095910002 CPT0095910002.WholeGenome.RP-1303.bam 69965816220 BAM aligned CPTAC3 afd2f3d9-9105-40f1-8fd0-0e1ed412a2bb 9b937f0790777358f13d69ad9f580460 { 'aliquot_tag': 'ALQ_a1d17215', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26340,18 +28297,21 @@ C3N-01526.miRNA-Seq.A C3N-01526 UCEC miRNA-Seq tissue_normal CPT0096040009 18111 C3N-01526.miRNA-Seq.A.hg38 C3N-01526 UCEC miRNA-Seq tissue_normal CPT0096040009 675a502d-a9db-421e-975e-d74e2c9fe707_mirnaseq_gdc_realn.bam 337801643 BAM harmonized CPTAC3 d3d8d935-1589-4ce2-896f-2db41c90b8d4 6e562994dab6a074f2af1f94bac6d3c6 { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01526.miRNA-Seq.T C3N-01526 UCEC miRNA-Seq tumor CPT0096010006 181108_UNC31-K00269_0163_BH23TVBBXY_CGTACG_S22_L008_R1_001.unaln.bam 158220765 BAM unaligned CPTAC3 c6da161a-80e7-4f9c-a93b-d734f606a82b 88e0435bf0d2df805d3214898c82857a { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor' } C3N-01526.miRNA-Seq.T.hg38 C3N-01526 UCEC miRNA-Seq tumor CPT0096010006 c6a5b694-d9bf-4797-98b7-219e0aa6668a_mirnaseq_gdc_realn.bam 172486611 BAM harmonized CPTAC3 db6edaf4-8231-416e-9609-0721677350a3 4253814aa7ce611a4c13302b4ff75441 { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor' } -C3N-01526.RNA-Seq.chimeric.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 9f237f50-22dc-4c18-9778-d66f4887a851.rna_seq.chimeric.gdc_realn.bam 23245713 BAM chimeric harmonized CPTAC3 59bead47-1ad1-485d-9c72-16220d185352 828000e044bcb81aca9755660c0c28ff { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01526.RNA-Seq.chimeric.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 578fbf28-87bf-4d20-b77f-ba81f4c1b4ad.rna_seq.chimeric.gdc_realn.bam 75755739 BAM chimeric harmonized CPTAC3 78df9380-6746-408b-80ba-abc5d557e92e 054e6610194716eddc47dce5e815ffa1 { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor' } -C3N-01526.RNA-Seq.genomic.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 9f237f50-22dc-4c18-9778-d66f4887a851.rna_seq.genomic.gdc_realn.bam 10944131666 BAM genomic harmonized CPTAC3 1c538ef3-4364-442a-b6d4-0ad271831e8f 91c6f66128a66462318d34e3af5ac2ce { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01526.RNA-Seq.genomic.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 578fbf28-87bf-4d20-b77f-ba81f4c1b4ad.rna_seq.genomic.gdc_realn.bam 8479578676 BAM genomic harmonized CPTAC3 435d4d7b-b79f-4ae7-af43-a73b90096db4 cefe4cb510ffe3e013515e5dbbae43e6 { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor' } -C3N-01526.RNA-Seq.R1_L006.A C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTCAA_S22_L006_R1_001.fastq.gz 3643577017 FASTQ R1_L006 unaligned CPTAC3 0c29467b-acde-475c-a5ff-55a1d8dac7ea 6fc30101a2f39c4a2182a607ef6d5e37 { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01526.RNA-Seq.R1_L008.T C3N-01526 UCEC RNA-Seq tumor CPT0096010006 171107_UNC32-K00270_0063_BHLNTCBBXX_TGACCA_S65_L008_R1_001.fastq.gz 4256256205 FASTQ R1_L008 unaligned CPTAC3 8578f4e1-2cd8-485a-802a-4bc4c087ba62 f29a6246992383a8f6bd51814309408c { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor' } -C3N-01526.RNA-Seq.R1_.T C3N-01526 UCEC RNA-Seq tumor CPT0096110001 20210714_P1_D3_WB7988_plate1_S39_R1_001.fastq.gz 9537553949 FASTQ R1_ unaligned CPTAC3 cfdc8516-703e-459c-a2ce-ceae446125be a28d9e28e3c8d8bc4d2bd84797e4bd08 { 'aliquot_tag': 'ALQ_e563bb5f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01526.RNA-Seq.R2_L006.A C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTCAA_S22_L006_R2_001.fastq.gz 3895644250 FASTQ R2_L006 unaligned CPTAC3 00710e15-20d7-48b0-a6dd-3d43506fdd63 90187447d72960bd70ee7e04e7228285 { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01526.RNA-Seq.R2_L008.T C3N-01526 UCEC RNA-Seq tumor CPT0096010006 171107_UNC32-K00270_0063_BHLNTCBBXX_TGACCA_S65_L008_R2_001.fastq.gz 4462628347 FASTQ R2_L008 unaligned CPTAC3 c2f960a7-f449-4c54-a4b4-1d25e49ed1f2 314445a4eb8889167e73242e24e131e7 { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor' } -C3N-01526.RNA-Seq.R2_.T C3N-01526 UCEC RNA-Seq tumor CPT0096110001 20210714_P1_D3_WB7988_plate1_S39_R2_001.fastq.gz 9925497092 FASTQ R2_ unaligned CPTAC3 1c4995ac-2e52-47bc-8896-9ec45e4ce331 3680e26a1b76a59749ec5649bc74b9c5 { 'aliquot_tag': 'ALQ_e563bb5f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01526.RNA-Seq.transcriptome.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 9f237f50-22dc-4c18-9778-d66f4887a851.rna_seq.transcriptome.gdc_realn.bam 9403470937 BAM transcriptome harmonized CPTAC3 27139d8f-51bd-40e2-8a9c-4ee49ae49584 3e0a62dac262df8e29f894146270548b { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01526.RNA-Seq.transcriptome.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 578fbf28-87bf-4d20-b77f-ba81f4c1b4ad.rna_seq.transcriptome.gdc_realn.bam 8777293153 BAM transcriptome harmonized CPTAC3 e949f729-8b69-4d5b-8af1-6b5bab9c3626 cbb23a300e4689819767d928825b97c3 { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor' } +C3N-01526.RNA-Seq.chimeric.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 f26f2593-2714-4438-9b34-e3ebc17e0022.rna_seq.chimeric.gdc_realn.bam 23230743 BAM chimeric harmonized CPTAC3 4fc45de2-a0ef-4c65-8c55-8598089fb7b3 c304074b4362a666c1719f17b98cba10 { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01526.RNA-Seq.chimeric.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 b8ca737b-519e-4f13-9723-fed372ced0c8.rna_seq.chimeric.gdc_realn.bam 75737232 BAM chimeric harmonized CPTAC3 659971ce-8e2b-4464-98a6-ec5d2cb60a1b 1c674db876fe46cbd39fa97c486a47af { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor' } +C3N-01526.RNA-Seq.chimeric.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096110001 a0b2928f-84ab-46f7-a476-2d8a43f31930.rna_seq.chimeric.gdc_realn.bam 354037650 BAM chimeric harmonized CPTAC3 67e30fae-afd2-496e-8ddc-19a2406505cf ab9735e89d25258882682fa663a7a189 { 'aliquot_tag': 'ALQ_e563bb5f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01526.RNA-Seq.genomic.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 f26f2593-2714-4438-9b34-e3ebc17e0022.rna_seq.genomic.gdc_realn.bam 10945318530 BAM genomic harmonized CPTAC3 3d4616e6-c393-44c1-882d-642242becc79 0b7b6ad2ab8451f2f6a76240c091540f { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01526.RNA-Seq.genomic.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 b8ca737b-519e-4f13-9723-fed372ced0c8.rna_seq.genomic.gdc_realn.bam 8481269034 BAM genomic harmonized CPTAC3 957285e7-59ea-4809-a6f2-5fa57e44c2b7 b3544f54fa1f54f5895c69ba6927d05c { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor' } +C3N-01526.RNA-Seq.genomic.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096110001 a0b2928f-84ab-46f7-a476-2d8a43f31930.rna_seq.genomic.gdc_realn.bam 16229256111 BAM genomic harmonized CPTAC3 9fe5990b-6460-4e3d-a966-98a6014ccab1 bbf7181fe704077f09c5ddb35ffe3454 { 'aliquot_tag': 'ALQ_e563bb5f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01526.RNA-Seq.R1_L006.A C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTCAA_S22_L006_R1_001.fastq.gz 3643577017 FASTQ R1_L006 unaligned CPTAC3 0c29467b-acde-475c-a5ff-55a1d8dac7ea 6fc30101a2f39c4a2182a607ef6d5e37 { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01526.RNA-Seq.R1_L008.T C3N-01526 UCEC RNA-Seq tumor CPT0096010006 171107_UNC32-K00270_0063_BHLNTCBBXX_TGACCA_S65_L008_R1_001.fastq.gz 4256256205 FASTQ R1_L008 unaligned CPTAC3 8578f4e1-2cd8-485a-802a-4bc4c087ba62 f29a6246992383a8f6bd51814309408c { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01526.RNA-Seq.R2_L006.A C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTCAA_S22_L006_R2_001.fastq.gz 3895644250 FASTQ R2_L006 unaligned CPTAC3 00710e15-20d7-48b0-a6dd-3d43506fdd63 90187447d72960bd70ee7e04e7228285 { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01526.RNA-Seq.R2_L008.T C3N-01526 UCEC RNA-Seq tumor CPT0096010006 171107_UNC32-K00270_0063_BHLNTCBBXX_TGACCA_S65_L008_R2_001.fastq.gz 4462628347 FASTQ R2_L008 unaligned CPTAC3 c2f960a7-f449-4c54-a4b4-1d25e49ed1f2 314445a4eb8889167e73242e24e131e7 { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01526.RNA-Seq.T C3N-01526 UCEC RNA-Seq tumor CPT0096110001 20210714_P1_D3_WB7988_plate1_S39_R1_001.fastq.gz 9537553949 FASTQ unaligned CPTAC3 cfdc8516-703e-459c-a2ce-ceae446125be a28d9e28e3c8d8bc4d2bd84797e4bd08 +C3N-01526.RNA-Seq.T C3N-01526 UCEC RNA-Seq tumor CPT0096110001 20210714_P1_D3_WB7988_plate1_S39_R2_001.fastq.gz 9925497092 FASTQ unaligned CPTAC3 1c4995ac-2e52-47bc-8896-9ec45e4ce331 3680e26a1b76a59749ec5649bc74b9c5 +C3N-01526.RNA-Seq.transcriptome.A.hg38 C3N-01526 UCEC RNA-Seq tissue_normal CPT0096040009 f26f2593-2714-4438-9b34-e3ebc17e0022.rna_seq.transcriptome.gdc_realn.bam 10607416640 BAM transcriptome harmonized CPTAC3 08eb6ff2-4a6d-49f4-b976-1a5edb297d1d aca4fb00222c6d1c20764f1c57b24b21 { 'aliquot_tag': 'ALQ_e8046fb8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01526.RNA-Seq.transcriptome.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096010006 b8ca737b-519e-4f13-9723-fed372ced0c8.rna_seq.transcriptome.gdc_realn.bam 10103139315 BAM transcriptome harmonized CPTAC3 40a6261e-5538-4cc2-8b39-e0c21c435365 86ce6a690effdacae316f120e18a2ad9 { 'aliquot_tag': 'ALQ_b05bfd59', 'gdc_sample_type': 'Primary Tumor' } +C3N-01526.RNA-Seq.transcriptome.T.hg38 C3N-01526 UCEC RNA-Seq tumor CPT0096110001 a0b2928f-84ab-46f7-a476-2d8a43f31930.rna_seq.transcriptome.gdc_realn.bam 8484050950 BAM transcriptome harmonized CPTAC3 f5f809ec-b84f-4d54-a559-90d423087240 1b4f5338f2b10a261b42baf7fed72051 { 'aliquot_tag': 'ALQ_e563bb5f', 'gdc_sample_type': 'Primary Tumor' } C3N-01526.WGS.A C3N-01526 UCEC WGS tissue_normal CPT0096040006 CPT0096040006.WholeGenome.RP-1303.bam 61802213737 BAM aligned CPTAC3 9be73bc2-7368-444f-a494-c67f3d48b88a 1bcd28d179f82338ef4070ad902f6927 { 'aliquot_tag': 'ALQ_78bb7229', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01526.WGS.A.hg38 C3N-01526 UCEC WGS tissue_normal CPT0096040006 8b96444c-9b82-4d36-aaa3-09c03a0e72f3_wgs_gdc_realn.bam 88796923552 BAM harmonized CPTAC3 a4db60e3-b255-434b-b7fb-5e206b67d60c 6b0d516e0ba495821198867b91d66a08 { 'aliquot_tag': 'ALQ_78bb7229', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01526.WGS.N C3N-01526 UCEC WGS blood_normal CPT0096050002 CPT0096050002.WholeGenome.RP-1303.bam 55158001907 BAM aligned CPTAC3 04ef166e-c2f5-4741-8979-e00a95e35479 0b0743fbd33136ebb71c1b1376a35514 { 'aliquot_tag': 'ALQ_42b69f80', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26368,13 +28328,16 @@ C3N-01529.MethArray.Green.T C3N-01529 UCEC Methylation Array tumor CPT0097440009 C3N-01529.MethArray.Red.T C3N-01529 UCEC Methylation Array tumor CPT0097440009 202234370095_R03C01_Red.idat 13676246 IDAT Red NA CPTAC3 457401a6-7b53-44f7-ab10-ef18c5d10dfa a045faedf3947e37c98ca295d0af43dc { 'aliquot_tag': 'ALQ_d5e2261a', 'gdc_sample_type': 'Primary Tumor' } C3N-01529.miRNA-Seq.T C3N-01529 UCEC miRNA-Seq tumor CPT0097440006 181108_UNC31-K00269_0163_BH23TVBBXY_GAGTGG_S23_L008_R1_001.unaln.bam 165082438 BAM unaligned CPTAC3 2330acc0-16a7-43e3-99a5-d942757c295a a23deb8cb6e0a7a4736381a16ac25b77 { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor' } C3N-01529.miRNA-Seq.T.hg38 C3N-01529 UCEC miRNA-Seq tumor CPT0097440006 52451cb0-9737-48ab-8b90-d8170421b021_mirnaseq_gdc_realn.bam 183330653 BAM harmonized CPTAC3 6489527b-b5ff-4f70-ac8b-453a354db5fa 19f612c600f9a062632ef982f4283efd { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01529.RNA-Seq.chimeric.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 d43151d0-3c55-4c3a-b25a-31a11f121441.rna_seq.chimeric.gdc_realn.bam 75945862 BAM chimeric harmonized CPTAC3 ca9d80f7-71bc-4cbf-adcd-7064577a440d e415964852481240e5c5ab042cf2c064 { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01529.RNA-Seq.genomic.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 d43151d0-3c55-4c3a-b25a-31a11f121441.rna_seq.genomic.gdc_realn.bam 7757715255 BAM genomic harmonized CPTAC3 52c7c4bd-5d7f-4281-8fd1-0ad1e6f6367e fbd79c1440a832d84e2442775165687b { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01529.RNA-Seq.R1_L007.T C3N-01529 UCEC RNA-Seq tumor CPT0097440006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L007_R1_001.fastq.gz 3757630695 FASTQ R1_L007 unaligned CPTAC3 0e6df3cf-f883-4b5f-9d7b-2bc837a601d6 85de2f6276e633d0805aa26c9a432818 { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01529.RNA-Seq.R1_.T C3N-01529 UCEC RNA-Seq tumor CPT0097540001 20210714_P1_B3_WB7988_plate1_S15_R1_001.fastq.gz 6414094236 FASTQ R1_ unaligned CPTAC3 72c35a6f-3f72-4362-8596-1093fafbd01b d6495e5c6134b6b35f2c23a7a0f5ff89 { 'aliquot_tag': 'ALQ_10657d8d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01529.RNA-Seq.R2_L007.T C3N-01529 UCEC RNA-Seq tumor CPT0097440006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L007_R2_001.fastq.gz 4009823687 FASTQ R2_L007 unaligned CPTAC3 0ca2762c-1af8-4387-8b4a-1b32e58a6430 c9ac2a268e0975ea277234fa63e24aed { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01529.RNA-Seq.R2_.T C3N-01529 UCEC RNA-Seq tumor CPT0097540001 20210714_P1_B3_WB7988_plate1_S15_R2_001.fastq.gz 6567530947 FASTQ R2_ unaligned CPTAC3 970ae1ae-cd05-498e-bb9b-40f4b574d5bb 4e35e73bd007a6b2bce5b1cbdc16ba08 { 'aliquot_tag': 'ALQ_10657d8d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01529.RNA-Seq.transcriptome.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 d43151d0-3c55-4c3a-b25a-31a11f121441.rna_seq.transcriptome.gdc_realn.bam 6823473027 BAM transcriptome harmonized CPTAC3 3133af1e-e2a3-41de-9ca6-4aef0799b1e8 9398223bf01086e9c9c5e6de9cc0521b { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01529.RNA-Seq.chimeric.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 119ac668-eab5-42e5-a7a5-f28720173235.rna_seq.chimeric.gdc_realn.bam 75940792 BAM chimeric harmonized CPTAC3 25d0d10c-7eb8-42a4-a7c5-64c9a55b065c a6af1c077f37b509e1a1ebc2ba3198be { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01529.RNA-Seq.chimeric.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097540001 ab5b1f26-3733-4b50-9d32-db162cec0967.rna_seq.chimeric.gdc_realn.bam 221228530 BAM chimeric harmonized CPTAC3 105acb6f-ae3b-45fe-8f5e-90a3a8d72bb7 4a7c8926f56139aa07abf2a871a13717 { 'aliquot_tag': 'ALQ_10657d8d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01529.RNA-Seq.genomic.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 119ac668-eab5-42e5-a7a5-f28720173235.rna_seq.genomic.gdc_realn.bam 7758723413 BAM genomic harmonized CPTAC3 1271be93-0e7b-4b2c-b92f-a3619ab8d7e9 168a3836f940236b54343e17692981a3 { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01529.RNA-Seq.genomic.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097540001 ab5b1f26-3733-4b50-9d32-db162cec0967.rna_seq.genomic.gdc_realn.bam 10298801408 BAM genomic harmonized CPTAC3 4ef5adfa-fbad-4923-95f6-5da8b53ceac3 ee02f2b0089a9a6dfa64736df3d2edbd { 'aliquot_tag': 'ALQ_10657d8d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01529.RNA-Seq.R1_L007.T C3N-01529 UCEC RNA-Seq tumor CPT0097440006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L007_R1_001.fastq.gz 3757630695 FASTQ R1_L007 unaligned CPTAC3 0e6df3cf-f883-4b5f-9d7b-2bc837a601d6 85de2f6276e633d0805aa26c9a432818 { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01529.RNA-Seq.R2_L007.T C3N-01529 UCEC RNA-Seq tumor CPT0097440006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L007_R2_001.fastq.gz 4009823687 FASTQ R2_L007 unaligned CPTAC3 0ca2762c-1af8-4387-8b4a-1b32e58a6430 c9ac2a268e0975ea277234fa63e24aed { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01529.RNA-Seq.T C3N-01529 UCEC RNA-Seq tumor CPT0097540001 20210714_P1_B3_WB7988_plate1_S15_R1_001.fastq.gz 6414094236 FASTQ unaligned CPTAC3 72c35a6f-3f72-4362-8596-1093fafbd01b d6495e5c6134b6b35f2c23a7a0f5ff89 +C3N-01529.RNA-Seq.T C3N-01529 UCEC RNA-Seq tumor CPT0097540001 20210714_P1_B3_WB7988_plate1_S15_R2_001.fastq.gz 6567530947 FASTQ unaligned CPTAC3 970ae1ae-cd05-498e-bb9b-40f4b574d5bb 4e35e73bd007a6b2bce5b1cbdc16ba08 +C3N-01529.RNA-Seq.transcriptome.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097440006 119ac668-eab5-42e5-a7a5-f28720173235.rna_seq.transcriptome.gdc_realn.bam 7763166968 BAM transcriptome harmonized CPTAC3 5688a66a-281b-45aa-ad3f-ec9e977fe2e4 6d567b34deab89b49b7bd78d79bda025 { 'aliquot_tag': 'ALQ_455d3b8b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01529.RNA-Seq.transcriptome.T.hg38 C3N-01529 UCEC RNA-Seq tumor CPT0097540001 ab5b1f26-3733-4b50-9d32-db162cec0967.rna_seq.transcriptome.gdc_realn.bam 7306600954 BAM transcriptome harmonized CPTAC3 0de9a0b7-93b0-404c-a740-b7a1b64ee50f 834d4e8146927de84d4e1ec4665f11ec { 'aliquot_tag': 'ALQ_10657d8d', 'gdc_sample_type': 'Primary Tumor' } C3N-01529.WGS.N C3N-01529 UCEC WGS blood_normal CPT0097470002 CPT0097470002.WholeGenome.RP-1303.bam 51561880329 BAM aligned CPTAC3 b041aafe-96f0-4ba7-95e1-1e4e1a9eb953 6da440e0e80f3561f278c870474bee02 { 'aliquot_tag': 'ALQ_5908542', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01529.WGS.N.hg38 C3N-01529 UCEC WGS blood_normal CPT0097470002 2d6f437b-7532-4f34-85da-c400876414af_wgs_gdc_realn.bam 75306443453 BAM harmonized CPTAC3 6db3a460-5559-42fa-a749-f662651a4a0e 5b270f1259fbae12470bcc080376a65f { 'aliquot_tag': 'ALQ_5908542', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01529.WGS.T C3N-01529 UCEC WGS tumor CPT0097440009 CPT0097440009.WholeGenome.RP-1303.bam 63236724570 BAM aligned CPTAC3 ba4eaf41-83eb-41f8-87c8-e163f7c2014f 175d6ef21c91aae1f0e68b9ec04b7b4b { 'aliquot_tag': 'ALQ_d5e2261a', 'gdc_sample_type': 'Primary Tumor' } @@ -26387,11 +28350,11 @@ C3N-01532.MethArray.Green.T C3N-01532 SAR Methylation Array tumor CPT0096290009 C3N-01532.MethArray.Red.T C3N-01532 SAR Methylation Array tumor CPT0096290009 202234370120_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 019bf3b0-7559-46a0-a06d-73cf3b339fd1 2c49db943bfdaaaf0b99bf2811d1201e { 'aliquot_tag': 'ALQ_5d5c0a02', 'gdc_sample_type': 'Primary Tumor' } C3N-01532.miRNA-Seq.T C3N-01532 SAR miRNA-Seq tumor CPT0096290013 181119_UNC31-K00269_0165_AH27WCBBXY_ACAGTG_S29_L003_R1_001.unaln.bam 189792569 BAM unaligned CPTAC3 c3ea81f2-2d92-4754-aee5-82d14eb39607 2f8117506c0f5c3ad6b069a734bfeb84 { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor' } C3N-01532.miRNA-Seq.T.hg38 C3N-01532 SAR miRNA-Seq tumor CPT0096290013 44b7205e-de41-4d5c-9bc1-074e7638b5ea_mirnaseq_gdc_realn.bam 208732281 BAM harmonized CPTAC3 22d07cbd-bbaf-4db9-92ce-3b53d6bb2a64 603c2e82b23da3b11e4612580f2fa124 { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01532.RNA-Seq.chimeric.T.hg38 C3N-01532 SAR RNA-Seq tumor CPT0096290013 e81bb9be-0ade-41bc-bd95-6ead3281f0b9.rna_seq.chimeric.gdc_realn.bam 159403446 BAM chimeric harmonized CPTAC3 8fa8c314-46fd-4a3e-9c32-54df4d043025 21208f47b7be384a0e444afda7ec3b93 { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01532.RNA-Seq.genomic.T.hg38 C3N-01532 SAR RNA-Seq tumor CPT0096290013 e81bb9be-0ade-41bc-bd95-6ead3281f0b9.rna_seq.genomic.gdc_realn.bam 8923585103 BAM genomic harmonized CPTAC3 b062dbbb-c45d-44f1-b23b-999595fbce94 9282a62b7284867bec7c7bd774cc1455 { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01532.RNA-Seq.R1_L001.T C3N-01532 SAR RNA-Seq tumor CPT0096290013 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L001_R1_001.fastq.gz 4371557138 FASTQ R1_L001 unaligned CPTAC3 cc55edee-92ec-491c-bdaa-e0d62437b499 97ecf2a7bc5f0f5c62276ca589cb23ad { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01532.RNA-Seq.R2_L001.T C3N-01532 SAR RNA-Seq tumor CPT0096290013 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L001_R2_001.fastq.gz 4239513080 FASTQ R2_L001 unaligned CPTAC3 cb4f6c90-9ed4-48ce-a85c-f82c97084ead 0a51932c240c3ca4120acc96ddb5877f { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01532.RNA-Seq.transcriptome.T.hg38 C3N-01532 SAR RNA-Seq tumor CPT0096290013 e81bb9be-0ade-41bc-bd95-6ead3281f0b9.rna_seq.transcriptome.gdc_realn.bam 9391059077 BAM transcriptome harmonized CPTAC3 d6a318be-ea4d-47ab-9d59-90890713ec6e ab4aff3150b1be0ea12a3b54be084806 { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01532.RNA-Seq.chimeric.T.hg38 C3N-01532 SAR RNA-Seq tumor CPT0096290013 2aba3316-8719-4943-af55-d8611a4af8b9.rna_seq.chimeric.gdc_realn.bam 159372713 BAM chimeric harmonized CPTAC3 1d011803-5a06-4427-80a0-2b9d7752684c 35e82b4d7ba97416224cff9be1551efe { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01532.RNA-Seq.genomic.T.hg38 C3N-01532 SAR RNA-Seq tumor CPT0096290013 2aba3316-8719-4943-af55-d8611a4af8b9.rna_seq.genomic.gdc_realn.bam 8924997376 BAM genomic harmonized CPTAC3 8fec7615-0800-44a0-9871-6e370a19cc25 3c82db2547962a9eca2fb7b84c205eb8 { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01532.RNA-Seq.R1_L001.T C3N-01532 SAR RNA-Seq tumor CPT0096290013 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L001_R1_001.fastq.gz 4371557138 FASTQ R1_L001 unaligned CPTAC3 cc55edee-92ec-491c-bdaa-e0d62437b499 97ecf2a7bc5f0f5c62276ca589cb23ad { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01532.RNA-Seq.R2_L001.T C3N-01532 SAR RNA-Seq tumor CPT0096290013 171109_UNC31-K00269_0090_AHLHNWBBXX_ATCACG_S3_L001_R2_001.fastq.gz 4239513080 FASTQ R2_L001 unaligned CPTAC3 cb4f6c90-9ed4-48ce-a85c-f82c97084ead 0a51932c240c3ca4120acc96ddb5877f { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01532.RNA-Seq.transcriptome.T.hg38 C3N-01532 SAR RNA-Seq tumor CPT0096290013 2aba3316-8719-4943-af55-d8611a4af8b9.rna_seq.transcriptome.gdc_realn.bam 10690636686 BAM transcriptome harmonized CPTAC3 f1208840-98f8-4a25-8664-edb68bbd2b13 c520aec7873975772493b2b39ed32e9b { 'aliquot_tag': 'ALQ_a492d25d', 'gdc_sample_type': 'Primary Tumor' } C3N-01532.WGS.N C3N-01532 SAR WGS blood_normal CPT0096330002 CPT0096330002.WholeGenome.RP-1303.bam 62565272534 BAM aligned CPTAC3 efa9b6c8-2643-4ac1-913e-b3a208ffc362 64bfb0cc8958d18eda6a208d851c8612 { 'aliquot_tag': 'ALQ_4b62188e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01532.WGS.N.hg38 C3N-01532 SAR WGS blood_normal CPT0096330002 083f7fee-1a89-45a7-a9d0-460aba205e4f_wgs_gdc_realn.bam 91032974534 BAM harmonized CPTAC3 0bcaa6b9-c880-420e-8014-0f37cea2e6c9 00d56126da353416cb4707a5a0e92877 { 'aliquot_tag': 'ALQ_4b62188e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01532.WGS.T C3N-01532 SAR WGS tumor CPT0096290009 CPT0096290009.WholeGenome.RP-1303.bam 67120378484 BAM aligned CPTAC3 4de641a9-5522-4dd1-97e0-6ce4ee9788dd 0fca6a05b3d6fcf7a0f4076fc0d2aba5 { 'aliquot_tag': 'ALQ_5d5c0a02', 'gdc_sample_type': 'Primary Tumor' } @@ -26406,16 +28369,16 @@ C3N-01534.miRNA-Seq.A C3N-01534 SAR miRNA-Seq tissue_normal CPT0096610006 181113 C3N-01534.miRNA-Seq.A.hg38 C3N-01534 SAR miRNA-Seq tissue_normal CPT0096610006 71e950e9-42c8-46cf-be03-d84a3e7030c5_mirnaseq_gdc_realn.bam 240545489 BAM harmonized CPTAC3 579de783-2586-4dbc-a7c6-dab2f480d805 7d0b2ce88cab750e2ce6465f79e6792f { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01534.miRNA-Seq.T C3N-01534 SAR miRNA-Seq tumor CPT0096590013 181119_UNC31-K00269_0165_AH27WCBBXY_GCCAAT_S30_L003_R1_001.unaln.bam 255536194 BAM unaligned CPTAC3 5af5fe4b-59c7-4364-974b-1d0b4fd1389e 700559c67687bca0ec1dd26254ff73cd { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor' } C3N-01534.miRNA-Seq.T.hg38 C3N-01534 SAR miRNA-Seq tumor CPT0096590013 c9884293-886f-47ea-bb10-cdfa33a2821c_mirnaseq_gdc_realn.bam 285254121 BAM harmonized CPTAC3 7e3f0224-796b-4248-ba8e-d94bbbb2901f 2132034f5233a4635769a2f82ccf0dad { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01534.RNA-Seq.chimeric.A.hg38 C3N-01534 SAR RNA-Seq tissue_normal CPT0096610006 1a7b797e-fb1d-4751-a206-df7c363ba896.rna_seq.chimeric.gdc_realn.bam 44723022 BAM chimeric harmonized CPTAC3 430dde7f-1031-4ffc-a800-03f25f06aefc 40b6cd49eb2edf956d9c47f0946b8d17 { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01534.RNA-Seq.chimeric.T.hg38 C3N-01534 SAR RNA-Seq tumor CPT0096590013 8b095988-17e0-4262-984b-c70f434d190a.rna_seq.chimeric.gdc_realn.bam 83063267 BAM chimeric harmonized CPTAC3 7eb78aa8-44ba-4c88-a77b-a1d49e06cd6e 6206d6cb66a3da17d8acc0383229bd55 { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01534.RNA-Seq.genomic.A.hg38 C3N-01534 SAR RNA-Seq tissue_normal CPT0096610006 1a7b797e-fb1d-4751-a206-df7c363ba896.rna_seq.genomic.gdc_realn.bam 8688356090 BAM genomic harmonized CPTAC3 ecb05bcf-abb4-4128-8164-e78182a2e9d1 390716446813685ab9da873532a59e4d { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01534.RNA-Seq.genomic.T.hg38 C3N-01534 SAR RNA-Seq tumor CPT0096590013 8b095988-17e0-4262-984b-c70f434d190a.rna_seq.genomic.gdc_realn.bam 11810947992 BAM genomic harmonized CPTAC3 0762f700-999a-4921-bf68-72d0eb23a7e8 595580cc1bdc2073c50ed1d714c97c90 { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01534.RNA-Seq.R1_L001.T C3N-01534 SAR RNA-Seq tumor CPT0096590013 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4314286589 FASTQ R1_L001 unaligned CPTAC3 947eb72e-02d2-405e-a678-dfc4e1a19555 77a7208840fe6e10f9533876ac4e8c5c { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01534.RNA-Seq.R1_L007.A C3N-01534 SAR RNA-Seq tissue_normal CPT0096610006 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3705469415 FASTQ R1_L007 unaligned CPTAC3 985af42f-8f11-4137-a3e2-025dc6b3d73e a2ec5f9ca838c8954e51687afb6a3a60 { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01534.RNA-Seq.R2_L001.T C3N-01534 SAR RNA-Seq tumor CPT0096590013 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L001_R2_001.fastq.gz 4762718198 FASTQ R2_L001 unaligned CPTAC3 8f542b79-b329-4f48-8407-7c37543cd559 ab8251db34a9f80f3840b8241e160fec { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01534.RNA-Seq.R2_L007.A C3N-01534 SAR RNA-Seq tissue_normal CPT0096610006 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 4010604323 FASTQ R2_L007 unaligned CPTAC3 70037698-152a-49ac-900c-193b82c4feab 51ba3d3ea1adb2987d9ec12df2b6bec0 { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01534.RNA-Seq.transcriptome.A.hg38 C3N-01534 SAR RNA-Seq tissue_normal CPT0096610006 1a7b797e-fb1d-4751-a206-df7c363ba896.rna_seq.transcriptome.gdc_realn.bam 7920458534 BAM transcriptome harmonized CPTAC3 f03fd361-269c-42d5-9960-6bd460ad8a61 69ed00e63f050dc2a605128d7e7ccccb { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01534.RNA-Seq.transcriptome.T.hg38 C3N-01534 SAR RNA-Seq tumor CPT0096590013 8b095988-17e0-4262-984b-c70f434d190a.rna_seq.transcriptome.gdc_realn.bam 10914811450 BAM transcriptome harmonized CPTAC3 12dafe3c-f2dc-431a-8244-5de74fbd4a0d 34431c867f33d7b375d656236a27ebe1 { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01534.RNA-Seq.chimeric.A.hg38 C3N-01534 SAR RNA-Seq tissue_normal CPT0096610006 452cf108-a9c5-48b6-9975-351b53499754.rna_seq.chimeric.gdc_realn.bam 44708766 BAM chimeric harmonized CPTAC3 e1a7aa9c-85bc-4ad4-91b1-33776facf4b3 021d6ee94aa88a2edf44aa961d1ef783 { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01534.RNA-Seq.chimeric.T.hg38 C3N-01534 SAR RNA-Seq tumor CPT0096590013 67dc373a-e95c-4b8a-92fe-6be4fc752df1.rna_seq.chimeric.gdc_realn.bam 83231428 BAM chimeric harmonized CPTAC3 b886f6d1-0939-4765-b2c7-dbc1e758178b c14eecfa3edfe59679750be3c41ae108 { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01534.RNA-Seq.genomic.A.hg38 C3N-01534 SAR RNA-Seq tissue_normal CPT0096610006 452cf108-a9c5-48b6-9975-351b53499754.rna_seq.genomic.gdc_realn.bam 8688522210 BAM genomic harmonized CPTAC3 ccbb1713-9e63-4eb9-aa30-2aef333b2926 dd0a6da91649bf6b4fdaa8e13e021a89 { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01534.RNA-Seq.genomic.T.hg38 C3N-01534 SAR RNA-Seq tumor CPT0096590013 67dc373a-e95c-4b8a-92fe-6be4fc752df1.rna_seq.genomic.gdc_realn.bam 11825228426 BAM genomic harmonized CPTAC3 4244b087-9602-49a0-9be7-fc348798d0da 666fa32dea23338945195ed596e78255 { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01534.RNA-Seq.R1_L001.T C3N-01534 SAR RNA-Seq tumor CPT0096590013 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L001_R1_001.fastq.gz 4314286589 FASTQ R1_L001 unaligned CPTAC3 947eb72e-02d2-405e-a678-dfc4e1a19555 77a7208840fe6e10f9533876ac4e8c5c { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01534.RNA-Seq.R1_L007.A C3N-01534 SAR RNA-Seq tissue_normal CPT0096610006 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L007_R1_001.fastq.gz 3705469415 FASTQ R1_L007 unaligned CPTAC3 985af42f-8f11-4137-a3e2-025dc6b3d73e a2ec5f9ca838c8954e51687afb6a3a60 { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01534.RNA-Seq.R2_L001.T C3N-01534 SAR RNA-Seq tumor CPT0096590013 171109_UNC31-K00269_0090_AHLHNWBBXX_CGATGT_S2_L001_R2_001.fastq.gz 4762718198 FASTQ R2_L001 unaligned CPTAC3 8f542b79-b329-4f48-8407-7c37543cd559 ab8251db34a9f80f3840b8241e160fec { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01534.RNA-Seq.R2_L007.A C3N-01534 SAR RNA-Seq tissue_normal CPT0096610006 180516_UNC32-K00270_0095_AHTY5LBBXX_TTAGGC_S1_L007_R2_001.fastq.gz 4010604323 FASTQ R2_L007 unaligned CPTAC3 70037698-152a-49ac-900c-193b82c4feab 51ba3d3ea1adb2987d9ec12df2b6bec0 { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01534.RNA-Seq.transcriptome.A.hg38 C3N-01534 SAR RNA-Seq tissue_normal CPT0096610006 452cf108-a9c5-48b6-9975-351b53499754.rna_seq.transcriptome.gdc_realn.bam 8984532268 BAM transcriptome harmonized CPTAC3 e5b8b8b8-61dc-4b58-bb7d-663955b75011 b0fbecf3118de842a08932062fb0561c { 'aliquot_tag': 'ALQ_66021e44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01534.RNA-Seq.transcriptome.T.hg38 C3N-01534 SAR RNA-Seq tumor CPT0096590013 67dc373a-e95c-4b8a-92fe-6be4fc752df1.rna_seq.transcriptome.gdc_realn.bam 10802264061 BAM transcriptome harmonized CPTAC3 0a9c0739-edd0-4ded-badf-c4a2add2ca53 dedc7080620a408c6fd3aeb548697f8f { 'aliquot_tag': 'ALQ_b997e2e5', 'gdc_sample_type': 'Primary Tumor' } C3N-01534.WGS.A C3N-01534 SAR WGS tissue_normal CPT0096610009 CPT0096610009.WholeGenome.RP-1303.bam 66335745490 BAM aligned CPTAC3 d5174d69-79ff-41ce-b237-bd4236ef3ba1 3f4aac0cb1396a1881d39f80e4d3f224 { 'aliquot_tag': 'ALQ_f6bd03d5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01534.WGS.A.hg38 C3N-01534 SAR WGS tissue_normal CPT0096610009 4c9eafb5-5626-4068-b6dd-b7037a72f9b3_wgs_gdc_realn.bam 96527083926 BAM harmonized CPTAC3 557be304-306b-4fb5-b24e-f6371a885438 06f376ddbfc2e530a13c0954f1439e1a { 'aliquot_tag': 'ALQ_f6bd03d5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01534.WGS.N C3N-01534 SAR WGS blood_normal CPT0096620002 CPT0096620002.WholeGenome.RP-1303.bam 64979091838 BAM aligned CPTAC3 b0c1ecdb-9f16-4076-bc11-07fa97c59788 8d68c168fbaa312faf27b52b8c601eae { 'aliquot_tag': 'ALQ_26cfa08d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26434,16 +28397,16 @@ C3N-01535.miRNA-Seq.A C3N-01535 SAR miRNA-Seq tissue_normal CPT0096760013 181119 C3N-01535.miRNA-Seq.A.hg38 C3N-01535 SAR miRNA-Seq tissue_normal CPT0096760013 ade6a093-e55e-488c-bea0-6c4e36d0ee67_mirnaseq_gdc_realn.bam 247358824 BAM harmonized CPTAC3 0d18d188-1158-42b2-b819-ac7b3794c0ca 3c57d1861345e4c2c09493c33116dfe0 { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01535.miRNA-Seq.T C3N-01535 SAR miRNA-Seq tumor CPT0096740013 181113_UNC31-K00269_0164_AH23NNBBXY_CCAACA_S12_L001_R1_001.unaln.bam 267267458 BAM unaligned CPTAC3 9cbb18e3-8713-4df7-808a-7fb607634d79 2626e08b27ce311d1560ffa039339f9c { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor' } C3N-01535.miRNA-Seq.T.hg38 C3N-01535 SAR miRNA-Seq tumor CPT0096740013 f7991b35-a91c-4d15-8189-856d0c9e43d3_mirnaseq_gdc_realn.bam 300855156 BAM harmonized CPTAC3 43b30c39-2dd6-4674-8e3c-7eab01e9bb10 0bd2474bb3f21cd9b22c8b3d2c98d783 { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01535.RNA-Seq.chimeric.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 814d823c-6bd4-48df-966d-ac23b713e4d8.rna_seq.chimeric.gdc_realn.bam 19862995 BAM chimeric harmonized CPTAC3 f73a3736-3253-4c86-86ac-909ab8068fa2 e091057193c19781b898d1875cfa05ad { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01535.RNA-Seq.chimeric.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 26a2a29d-65d5-4d58-bea1-486078143607.rna_seq.chimeric.gdc_realn.bam 106918429 BAM chimeric harmonized CPTAC3 57ac2669-c365-4602-a6f2-5fea8773f40d 11bf19c93c699bff1851f106d57f1772 { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01535.RNA-Seq.genomic.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 814d823c-6bd4-48df-966d-ac23b713e4d8.rna_seq.genomic.gdc_realn.bam 9685130213 BAM genomic harmonized CPTAC3 ee7838ce-880c-4645-af23-bb530d2ca060 348a2764fffc39fde5ae7c278b3cdde4 { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01535.RNA-Seq.genomic.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 26a2a29d-65d5-4d58-bea1-486078143607.rna_seq.genomic.gdc_realn.bam 8514597395 BAM genomic harmonized CPTAC3 62590193-8d54-4235-8563-fa141d217b0b 25b514aa4264941263ba0e25814a4eb6 { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01535.RNA-Seq.R1_L001.T C3N-01535 SAR RNA-Seq tumor CPT0096740013 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3653410476 FASTQ R1_L001 unaligned CPTAC3 6b0e8cf9-219e-4301-bb63-379927bf4852 195327ec7d13c98b14560342532a17d6 { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01535.RNA-Seq.R1_L006.A C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 180516_UNC31-K00269_0130_BHV22JBBXX_GAGTGG_S22_L006_R1_001.fastq.gz 3818859532 FASTQ R1_L006 unaligned CPTAC3 77598c2d-fca6-4735-8e13-22554daa653f bcaa858b1e322cfca5292c8ed4a432f4 { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01535.RNA-Seq.R2_L001.T C3N-01535 SAR RNA-Seq tumor CPT0096740013 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 3990728012 FASTQ R2_L001 unaligned CPTAC3 8e139d1b-b60c-4ff8-8ea7-6c597fe1e478 b1d83d6c5455e5eea28d0a7a3dd09eeb { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01535.RNA-Seq.R2_L006.A C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 180516_UNC31-K00269_0130_BHV22JBBXX_GAGTGG_S22_L006_R2_001.fastq.gz 4118902029 FASTQ R2_L006 unaligned CPTAC3 f0c1a7c7-5ff6-4359-8fd0-3a4238e91ec2 028d198c9f7f0c415f6380eecf0030ee { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01535.RNA-Seq.transcriptome.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 814d823c-6bd4-48df-966d-ac23b713e4d8.rna_seq.transcriptome.gdc_realn.bam 10328353619 BAM transcriptome harmonized CPTAC3 d9fab46b-0bb7-4eb5-9b38-24711f6a8208 dc3447217b6651a519023829cba6a2c7 { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01535.RNA-Seq.transcriptome.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 26a2a29d-65d5-4d58-bea1-486078143607.rna_seq.transcriptome.gdc_realn.bam 10055558695 BAM transcriptome harmonized CPTAC3 4777b3a1-9b44-47f4-9caa-fc50deb9e5c1 82accf11e03e33a628f5f786856949bf { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01535.RNA-Seq.chimeric.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 f68c3fcc-9268-4188-a8dc-ea1de7f5da1f.rna_seq.chimeric.gdc_realn.bam 19850821 BAM chimeric harmonized CPTAC3 6f5567d6-baa6-4754-9a26-2719fdf9e4ae 5190962ec18678c4f776299d41c3f698 { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01535.RNA-Seq.chimeric.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 d7e860a1-9233-4425-83df-d0d62ca2bb09.rna_seq.chimeric.gdc_realn.bam 106887677 BAM chimeric harmonized CPTAC3 2fed2f40-f740-41b9-b883-f84ee6b181bc f0fe0c59e2ea414cc6530a2695ace557 { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01535.RNA-Seq.genomic.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 f68c3fcc-9268-4188-a8dc-ea1de7f5da1f.rna_seq.genomic.gdc_realn.bam 9686837419 BAM genomic harmonized CPTAC3 c3bf8e94-f46e-4572-bc32-b3e6e6e3fabd 7a959512a4ad22c1902f88081cb3aae0 { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01535.RNA-Seq.genomic.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 d7e860a1-9233-4425-83df-d0d62ca2bb09.rna_seq.genomic.gdc_realn.bam 8515236795 BAM genomic harmonized CPTAC3 2bca2f29-a340-4dc4-adec-d75abd774a19 919881d8b7a0ac6ea7f99ffcc2feeee6 { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01535.RNA-Seq.R1_L001.T C3N-01535 SAR RNA-Seq tumor CPT0096740013 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L001_R1_001.fastq.gz 3653410476 FASTQ R1_L001 unaligned CPTAC3 6b0e8cf9-219e-4301-bb63-379927bf4852 195327ec7d13c98b14560342532a17d6 { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01535.RNA-Seq.R1_L006.A C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 180516_UNC31-K00269_0130_BHV22JBBXX_GAGTGG_S22_L006_R1_001.fastq.gz 3818859532 FASTQ R1_L006 unaligned CPTAC3 77598c2d-fca6-4735-8e13-22554daa653f bcaa858b1e322cfca5292c8ed4a432f4 { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01535.RNA-Seq.R2_L001.T C3N-01535 SAR RNA-Seq tumor CPT0096740013 171109_UNC31-K00269_0090_AHLHNWBBXX_TTAGGC_S1_L001_R2_001.fastq.gz 3990728012 FASTQ R2_L001 unaligned CPTAC3 8e139d1b-b60c-4ff8-8ea7-6c597fe1e478 b1d83d6c5455e5eea28d0a7a3dd09eeb { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01535.RNA-Seq.R2_L006.A C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 180516_UNC31-K00269_0130_BHV22JBBXX_GAGTGG_S22_L006_R2_001.fastq.gz 4118902029 FASTQ R2_L006 unaligned CPTAC3 f0c1a7c7-5ff6-4359-8fd0-3a4238e91ec2 028d198c9f7f0c415f6380eecf0030ee { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01535.RNA-Seq.transcriptome.A.hg38 C3N-01535 SAR RNA-Seq tissue_normal CPT0096760013 f68c3fcc-9268-4188-a8dc-ea1de7f5da1f.rna_seq.transcriptome.gdc_realn.bam 11539693728 BAM transcriptome harmonized CPTAC3 04120d9c-b75a-4473-ae43-3862a185ee16 af9f89b281e88cf009d6a731b098364e { 'aliquot_tag': 'ALQ_760fd43f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01535.RNA-Seq.transcriptome.T.hg38 C3N-01535 SAR RNA-Seq tumor CPT0096740013 d7e860a1-9233-4425-83df-d0d62ca2bb09.rna_seq.transcriptome.gdc_realn.bam 11391299524 BAM transcriptome harmonized CPTAC3 21e95235-9895-40e1-888e-3de999e6cec0 c65b8a16a801cd5e68539233a1a97258 { 'aliquot_tag': 'ALQ_ccf875f', 'gdc_sample_type': 'Primary Tumor' } C3N-01535.WGS.N C3N-01535 SAR WGS blood_normal CPT0096770002 CPT0096770002.WholeGenome.RP-1303.bam 70043643540 BAM aligned CPTAC3 961023a0-4be9-49f1-86c1-1fbaf9419bb4 6a4e9241011a413aaf67208d77dad2c7 { 'aliquot_tag': 'ALQ_2573fc58', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01535.WGS.N.hg38 C3N-01535 SAR WGS blood_normal CPT0096770002 d65c5477-0bca-4777-88f5-f26e7d05d590_wgs_gdc_realn.bam 101626224533 BAM harmonized CPTAC3 6a521b51-0470-4cac-b8d2-6acaf2501d2e 167c273434e29e901497ee1e27b82cc5 { 'aliquot_tag': 'ALQ_2573fc58', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01535.WGS.T C3N-01535 SAR WGS tumor CPT0096740009 CPT0096740009.WholeGenome.RP-1303.bam 67040660119 BAM aligned CPTAC3 685e047c-b598-4761-a1d2-d2cdcbfc4277 84b1c5cfefe5a9c0d8ed6fbd708a600e { 'aliquot_tag': 'ALQ_f5015f00', 'gdc_sample_type': 'Primary Tumor' } @@ -26460,16 +28423,16 @@ C3N-01536.miRNA-Seq.A C3N-01536 CCRCC miRNA-Seq tissue_normal CPT0096900009 1811 C3N-01536.miRNA-Seq.A.hg38 C3N-01536 CCRCC miRNA-Seq tissue_normal CPT0096900009 b348db52-d24c-4a45-bc34-61ee21ff036c_mirnaseq_gdc_realn.bam 249017950 BAM harmonized CPTAC3 f0f18551-a5af-4335-b9c3-d753c36a0a7e 8c2593ef2e76e287a911e4d79ca06e86 { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01536.miRNA-Seq.T C3N-01536 CCRCC miRNA-Seq tumor CPT0096890006 181108_UNC31-K00269_0163_BH23TVBBXY_GGTAGC_S24_L008_R1_001.unaln.bam 270630827 BAM unaligned CPTAC3 8b406386-6ef7-498c-a069-251e66d38194 a5a57ad166d453db24be02040e216615 { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor' } C3N-01536.miRNA-Seq.T.hg38 C3N-01536 CCRCC miRNA-Seq tumor CPT0096890006 67238b6d-639d-4c69-8949-abe385ad8f27_mirnaseq_gdc_realn.bam 293903149 BAM harmonized CPTAC3 281525b4-a978-4b3b-858e-0b1971b474da 36b500f61106252d6e52d71b277736a1 { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01536.RNA-Seq.chimeric.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 e5ef3d7c-9303-48a4-bade-7f42f86cba6e.rna_seq.chimeric.gdc_realn.bam 45786184 BAM chimeric harmonized CPTAC3 e3fcdae9-f0a8-471a-8799-78bc00cb71d1 8d28c1c33b02bed8ce6c1122004f9bbb { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01536.RNA-Seq.chimeric.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 592bcc8b-bfe4-4dcd-945c-c58465a1b29e.rna_seq.chimeric.gdc_realn.bam 91144160 BAM chimeric harmonized CPTAC3 8766d62f-750e-4f89-8d46-d64efcbc82ab d023a737469f6911aa3c6c00e23cb7cc { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01536.RNA-Seq.genomic.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 e5ef3d7c-9303-48a4-bade-7f42f86cba6e.rna_seq.genomic.gdc_realn.bam 9300507855 BAM genomic harmonized CPTAC3 859faf9f-7be6-40b7-9de0-6bfca3f37ee8 c4427e135647e2692e742a196d230b08 { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01536.RNA-Seq.genomic.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 592bcc8b-bfe4-4dcd-945c-c58465a1b29e.rna_seq.genomic.gdc_realn.bam 8293446426 BAM genomic harmonized CPTAC3 dd9efb6a-e474-4d16-b979-3e2cd24ce44a 72d53a7bf30ce43bdc61048c509245ef { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01536.RNA-Seq.R1_L003.A C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L003_R1_001.fastq.gz 4090350533 FASTQ R1_L003 unaligned CPTAC3 e38cbc47-698a-4200-9052-204aee3e99a8 f9ae310764ea15c8f9e5ad7f3ab57397 { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01536.RNA-Seq.R1_L007.T C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 171107_UNC32-K00270_0063_BHLNTCBBXX_GCCAAT_S59_L007_R1_001.fastq.gz 3935856886 FASTQ R1_L007 unaligned CPTAC3 660e64b7-4317-4354-bd0d-940ab05c3cdf db89cee89a25aa2f1f16a3c33301d6d3 { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01536.RNA-Seq.R2_L003.A C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L003_R2_001.fastq.gz 4448053190 FASTQ R2_L003 unaligned CPTAC3 20864a46-7a3d-41f5-a606-e64ba2bd50f8 e4bd9362fb81902e3a29dbe97db41ecc { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01536.RNA-Seq.R2_L007.T C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 171107_UNC32-K00270_0063_BHLNTCBBXX_GCCAAT_S59_L007_R2_001.fastq.gz 4257805410 FASTQ R2_L007 unaligned CPTAC3 92e4b3b1-36db-464a-9351-b029e2fc459a 2c7e8ea4063863f302ac242be22ace67 { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01536.RNA-Seq.transcriptome.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 e5ef3d7c-9303-48a4-bade-7f42f86cba6e.rna_seq.transcriptome.gdc_realn.bam 9222346267 BAM transcriptome harmonized CPTAC3 f8d0abea-2b85-4a89-aa2c-f55dfde2fc0c 269fe8dc83124ba288abb3d6f00755c3 { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01536.RNA-Seq.transcriptome.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 592bcc8b-bfe4-4dcd-945c-c58465a1b29e.rna_seq.transcriptome.gdc_realn.bam 8839033881 BAM transcriptome harmonized CPTAC3 e5834cff-7e6c-41d6-9a19-365abbc13d32 7c78b0a081049b395fa9e975af72813a { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01536.RNA-Seq.chimeric.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 4b5d0657-fab2-4ad6-a26a-eb821b9bdac1.rna_seq.chimeric.gdc_realn.bam 45793412 BAM chimeric harmonized CPTAC3 2bbe2c01-1bb4-431a-a5fa-dfef05dd1b46 f421182d510c230245991ae2fa96b745 { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01536.RNA-Seq.chimeric.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 76eff948-8f23-444d-a981-f3e3bf3772a1.rna_seq.chimeric.gdc_realn.bam 91113663 BAM chimeric harmonized CPTAC3 ef66a021-56c6-41fa-a1ad-e085bf4d2ded a57748803f9929f7c65dae7aae5b8304 { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01536.RNA-Seq.genomic.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 4b5d0657-fab2-4ad6-a26a-eb821b9bdac1.rna_seq.genomic.gdc_realn.bam 9301910311 BAM genomic harmonized CPTAC3 82f4e93b-c502-4d56-a72c-5bd202cd4403 43ee4c628db86b3e36bb0987790fb7e9 { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01536.RNA-Seq.genomic.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 76eff948-8f23-444d-a981-f3e3bf3772a1.rna_seq.genomic.gdc_realn.bam 8294701247 BAM genomic harmonized CPTAC3 03f0e3dc-cd15-4ca4-a869-b222013d4dfc f82e1e9ab19ddd7a4bcb2c9fd8ab9d2f { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01536.RNA-Seq.R1_L003.A C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L003_R1_001.fastq.gz 4090350533 FASTQ R1_L003 unaligned CPTAC3 e38cbc47-698a-4200-9052-204aee3e99a8 f9ae310764ea15c8f9e5ad7f3ab57397 { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01536.RNA-Seq.R1_L007.T C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 171107_UNC32-K00270_0063_BHLNTCBBXX_GCCAAT_S59_L007_R1_001.fastq.gz 3935856886 FASTQ R1_L007 unaligned CPTAC3 660e64b7-4317-4354-bd0d-940ab05c3cdf db89cee89a25aa2f1f16a3c33301d6d3 { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01536.RNA-Seq.R2_L003.A C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 180516_UNC31-K00269_0129_AHTWLFBBXX_TGACCA_S12_L003_R2_001.fastq.gz 4448053190 FASTQ R2_L003 unaligned CPTAC3 20864a46-7a3d-41f5-a606-e64ba2bd50f8 e4bd9362fb81902e3a29dbe97db41ecc { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-01536.RNA-Seq.R2_L007.T C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 171107_UNC32-K00270_0063_BHLNTCBBXX_GCCAAT_S59_L007_R2_001.fastq.gz 4257805410 FASTQ R2_L007 unaligned CPTAC3 92e4b3b1-36db-464a-9351-b029e2fc459a 2c7e8ea4063863f302ac242be22ace67 { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01536.RNA-Seq.transcriptome.A.hg38 C3N-01536 CCRCC RNA-Seq tissue_normal CPT0096900009 4b5d0657-fab2-4ad6-a26a-eb821b9bdac1.rna_seq.transcriptome.gdc_realn.bam 10533006090 BAM transcriptome harmonized CPTAC3 717bc3fd-374a-4fa3-b2aa-942079ee21ae 3db43928ae0625f118f69a8f66af2057 { 'aliquot_tag': 'ALQ_3a8b98b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01536.RNA-Seq.transcriptome.T.hg38 C3N-01536 CCRCC RNA-Seq tumor CPT0096890006 76eff948-8f23-444d-a981-f3e3bf3772a1.rna_seq.transcriptome.gdc_realn.bam 10015442160 BAM transcriptome harmonized CPTAC3 ad2883f1-20f1-4369-9322-d8270f7d0931 91391f69b49038bd17b4086bd90b5eb7 { 'aliquot_tag': 'ALQ_6c7834f5', 'gdc_sample_type': 'Primary Tumor' } C3N-01536.WGS.A C3N-01536 CCRCC WGS tissue_normal CPT0096900006 CPT0096900006.WholeGenome.RP-1303.bam 66239733938 BAM aligned CPTAC3 6c768e7d-6f2e-4296-a981-d5d8c121f76a ea76b6eda42a5ed5e3ab6ad178ed0917 { 'aliquot_tag': 'ALQ_aa348521', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01536.WGS.A.hg38 C3N-01536 CCRCC WGS tissue_normal CPT0096900006 e9b92874-68a0-45ca-b763-a078f3620f7f_wgs_gdc_realn.bam 95953713592 BAM harmonized CPTAC3 5e3b987c-8694-4021-8a76-1b2ffd4bf9cf f2d9e59f5a4e6083a0acdb6ad2090b09 { 'aliquot_tag': 'ALQ_aa348521', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01536.WGS.N C3N-01536 CCRCC WGS blood_normal CPT0096910002 CPT0096910002.WholeGenome.RP-1303.bam 59230312683 BAM aligned CPTAC3 25f9836f-10a9-4f77-81c0-40fcc4db1132 90e6f23fd48c583cb76ead239a2c0181 { 'aliquot_tag': 'ALQ_90396888', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26487,9 +28450,9 @@ C3N-01537.MethArray.Red.T C3N-01537 UCEC Methylation Array tumor CPT0097010009 2 C3N-01537.miRNA-Seq.T C3N-01537 UCEC miRNA-Seq tumor CPT0097010006 181108_UNC31-K00269_0163_BH23TVBBXY_ACTGAT_S25_L007_R1_001.unaln.bam 214308257 BAM unaligned CPTAC3 f8c385f1-843d-4649-a21a-4a501cd6e35c 748660cb68c7ea39ba20f5a2c7387634 { 'aliquot_tag': 'ALQ_162cf6ed', 'gdc_sample_type': 'Primary Tumor' } C3N-01537.miRNA-Seq.T.hg38 C3N-01537 UCEC miRNA-Seq tumor CPT0097010006 e2391a17-5d82-4178-84e3-5a22e36e4b5b_mirnaseq_gdc_realn.bam 230765369 BAM harmonized CPTAC3 86d981ba-127d-4b67-b7ea-0bee81694a8b fc4f1463033e9252805f42aab7f7da6e { 'aliquot_tag': 'ALQ_162cf6ed', 'gdc_sample_type': 'Primary Tumor' } C3N-01537.RNA-Seq.chimeric.T.hg38 C3N-01537 UCEC RNA-Seq tumor CPT0097010006 b30ac0cf-1fbd-427b-92da-23de5e1414ed.rna_seq.chimeric.gdc_realn.bam 81336084 BAM chimeric harmonized CPTAC3 a4299e30-a207-4739-b28f-37f0c6dfff0c 4c4f8746dc7bedd7d625cd24a5b0b384 { 'aliquot_tag': 'ALQ_162cf6ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-01537.RNA-Seq.genomic.T.hg38 C3N-01537 UCEC RNA-Seq tumor CPT0097010006 b30ac0cf-1fbd-427b-92da-23de5e1414ed.rna_seq.genomic.gdc_realn.bam 9947269055 BAM genomic harmonized CPTAC3 3fe6437e-24ae-4c16-bf12-065d40ff052d 8aff5cffda743759c39a94513d003d52 { 'aliquot_tag': 'ALQ_162cf6ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-01537.RNA-Seq.R1_L007.T C3N-01537 UCEC RNA-Seq tumor CPT0097010006 171107_UNC32-K00270_0063_BHLNTCBBXX_CAGATC_S60_L007_R1_001.fastq.gz 4274186903 FASTQ R1_L007 unaligned CPTAC3 c00f784d-3143-4e88-b652-40a42aa38f53 80d126071a4cdca39d78ad71e235b186 { 'aliquot_tag': 'ALQ_162cf6ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-01537.RNA-Seq.R2_L007.T C3N-01537 UCEC RNA-Seq tumor CPT0097010006 171107_UNC32-K00270_0063_BHLNTCBBXX_CAGATC_S60_L007_R2_001.fastq.gz 4759021162 FASTQ R2_L007 unaligned CPTAC3 53445ea6-98ca-4134-a8bb-cd64497935a7 5133ada79294bde8a80689ee10b62158 { 'aliquot_tag': 'ALQ_162cf6ed', 'gdc_sample_type': 'Primary Tumor' } +C3N-01537.RNA-Seq.genomic.T.hg38 C3N-01537 UCEC RNA-Seq tumor CPT0097010006 b30ac0cf-1fbd-427b-92da-23de5e1414ed.rna_seq.genomic.gdc_realn.bam 9947269055 BAM genomic harmonized CPTAC3 e871a49b-e54d-496c-a7bb-b26cff29b025 8aff5cffda743759c39a94513d003d52 { 'aliquot_tag': 'ALQ_162cf6ed', 'gdc_sample_type': 'Primary Tumor' } +C3N-01537.RNA-Seq.R1_L007.T C3N-01537 UCEC RNA-Seq tumor CPT0097010006 171107_UNC32-K00270_0063_BHLNTCBBXX_CAGATC_S60_L007_R1_001.fastq.gz 4274186903 FASTQ R1_L007 unaligned CPTAC3 c00f784d-3143-4e88-b652-40a42aa38f53 80d126071a4cdca39d78ad71e235b186 { 'aliquot_tag': 'ALQ_162cf6ed', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01537.RNA-Seq.R2_L007.T C3N-01537 UCEC RNA-Seq tumor CPT0097010006 171107_UNC32-K00270_0063_BHLNTCBBXX_CAGATC_S60_L007_R2_001.fastq.gz 4759021162 FASTQ R2_L007 unaligned CPTAC3 53445ea6-98ca-4134-a8bb-cd64497935a7 5133ada79294bde8a80689ee10b62158 { 'aliquot_tag': 'ALQ_162cf6ed', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01537.RNA-Seq.transcriptome.T.hg38 C3N-01537 UCEC RNA-Seq tumor CPT0097010006 b30ac0cf-1fbd-427b-92da-23de5e1414ed.rna_seq.transcriptome.gdc_realn.bam 8695346254 BAM transcriptome harmonized CPTAC3 c52accad-b0e0-43b9-a372-e8f5e276580e 33746cd38417c7a26782c67460b758e1 { 'aliquot_tag': 'ALQ_162cf6ed', 'gdc_sample_type': 'Primary Tumor' } C3N-01537.WGS.N C3N-01537 UCEC WGS blood_normal CPT0097050002 CPT0097050002.WholeGenome.RP-1303.bam 54120391438 BAM aligned CPTAC3 efab4a3f-aec8-490c-95bc-bd700e1ec420 07098858535cb37632d98a47a5974ddd { 'aliquot_tag': 'ALQ_e4c19434', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01537.WGS.N.hg38 C3N-01537 UCEC WGS blood_normal CPT0097050002 ef01edb4-ba7c-427e-a2b0-d5099f8d06fb_wgs_gdc_realn.bam 80462406863 BAM harmonized CPTAC3 809337b5-5049-4bb0-942f-b85a59d52743 960886384846b889001479e831d6fef9 { 'aliquot_tag': 'ALQ_e4c19434', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26504,12 +28467,15 @@ C3N-01620.MethArray.Red.T C3N-01620 HNSCC Methylation Array tumor CPT0095040008 C3N-01620.miRNA-Seq.T C3N-01620 HNSCC miRNA-Seq tumor CPT0095040006 181108_UNC31-K00269_0163_BH23TVBBXY_ATGAGC_S26_L007_R1_001.unaln.bam 194627771 BAM unaligned CPTAC3 25856de4-ec3d-4b73-9a93-c4a19210793a cc01ba68ced2d0a994a5ec64b2ecea49 { 'aliquot_tag': 'ALQ_495368b4', 'gdc_sample_type': 'Primary Tumor' } C3N-01620.miRNA-Seq.T.hg38 C3N-01620 HNSCC miRNA-Seq tumor CPT0095040006 3fcf3ac4-2604-430a-9808-ac4e1f1cd86f_mirnaseq_gdc_realn.bam 213350197 BAM harmonized CPTAC3 90b6502f-09cb-4718-8919-f41b8b7cf311 be9c8c77ce870f8bc3b8a7c64455238f { 'aliquot_tag': 'ALQ_495368b4', 'gdc_sample_type': 'Primary Tumor' } C3N-01620.RNA-Seq.chimeric.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 4600c1c0-1d41-48e3-9622-05ea538d5aae.rna_seq.chimeric.gdc_realn.bam 69995330 BAM chimeric harmonized CPTAC3 406fef01-6454-424c-9b05-c4d2b46cd8c8 2b122e037802452264dc82384c538a46 { 'aliquot_tag': 'ALQ_495368b4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01620.RNA-Seq.genomic.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 4600c1c0-1d41-48e3-9622-05ea538d5aae.rna_seq.genomic.gdc_realn.bam 7298102385 BAM genomic harmonized CPTAC3 c0c80037-9d9f-4541-b132-e5bacb16d201 42fe4050a3da9a784565d5acb1ddf446 { 'aliquot_tag': 'ALQ_495368b4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01620.RNA-Seq.R1_L007.T C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACTTGA_S61_L007_R1_001.fastq.gz 3420638026 FASTQ R1_L007 unaligned CPTAC3 101fbac5-f118-4d4f-85c2-b8973eab7003 024979749350168bb39f36d2586b8825 { 'aliquot_tag': 'ALQ_495368b4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01620.RNA-Seq.R1_.T C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 20210729_P3_B12_WB7988-Plate3_S24_R1_001.fastq.gz 3937161859 FASTQ R1_ unaligned CPTAC3 a7be9dfc-ed94-4de5-92e2-6ff7f9d9e218 bb135e7ffbb9715ab7aa35109fb1e57a { 'aliquot_tag': 'ALQ_e64adf9f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01620.RNA-Seq.R2_L007.T C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACTTGA_S61_L007_R2_001.fastq.gz 3676007510 FASTQ R2_L007 unaligned CPTAC3 d2b324b1-0971-4ea9-a765-0c493db0de32 eb4fa897dccb8bf669abf8202575805b { 'aliquot_tag': 'ALQ_495368b4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01620.RNA-Seq.R2_.T C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 20210729_P3_B12_WB7988-Plate3_S24_R2_001.fastq.gz 4471803060 FASTQ R2_ unaligned CPTAC3 7590171e-43a8-4d1d-9a36-0a83720882bb a368a3a35589b99ea0c16ddbedc0410f { 'aliquot_tag': 'ALQ_e64adf9f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01620.RNA-Seq.chimeric.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 9bc2d395-3787-419c-90e8-248b144560ba.rna_seq.chimeric.gdc_realn.bam 44583242 BAM chimeric harmonized CPTAC3 3956b988-7a2a-421e-a2b1-cf55eea4a7d2 2316b0f860ad38f180c16ecef7aff3b6 { 'aliquot_tag': 'ALQ_e64adf9f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01620.RNA-Seq.genomic.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 4600c1c0-1d41-48e3-9622-05ea538d5aae.rna_seq.genomic.gdc_realn.bam 7298102385 BAM genomic harmonized CPTAC3 4e755fde-b683-4d2d-b246-dd9083b69aa0 42fe4050a3da9a784565d5acb1ddf446 { 'aliquot_tag': 'ALQ_495368b4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01620.RNA-Seq.genomic.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 9bc2d395-3787-419c-90e8-248b144560ba.rna_seq.genomic.gdc_realn.bam 7241684475 BAM genomic harmonized CPTAC3 19cb551b-e22c-4f25-8597-70634c48f195 914a01e87c6c807f28a42d89f4a8778f { 'aliquot_tag': 'ALQ_e64adf9f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01620.RNA-Seq.R1_L007.T C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACTTGA_S61_L007_R1_001.fastq.gz 3420638026 FASTQ R1_L007 unaligned CPTAC3 101fbac5-f118-4d4f-85c2-b8973eab7003 024979749350168bb39f36d2586b8825 { 'aliquot_tag': 'ALQ_495368b4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01620.RNA-Seq.R2_L007.T C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACTTGA_S61_L007_R2_001.fastq.gz 3676007510 FASTQ R2_L007 unaligned CPTAC3 d2b324b1-0971-4ea9-a765-0c493db0de32 eb4fa897dccb8bf669abf8202575805b { 'aliquot_tag': 'ALQ_495368b4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01620.RNA-Seq.T C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 20210729_P3_B12_WB7988-Plate3_S24_R1_001.fastq.gz 3937161859 FASTQ unaligned CPTAC3 a7be9dfc-ed94-4de5-92e2-6ff7f9d9e218 bb135e7ffbb9715ab7aa35109fb1e57a +C3N-01620.RNA-Seq.T C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 20210729_P3_B12_WB7988-Plate3_S24_R2_001.fastq.gz 4471803060 FASTQ unaligned CPTAC3 7590171e-43a8-4d1d-9a36-0a83720882bb a368a3a35589b99ea0c16ddbedc0410f C3N-01620.RNA-Seq.transcriptome.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0095040006 4600c1c0-1d41-48e3-9622-05ea538d5aae.rna_seq.transcriptome.gdc_realn.bam 8816786275 BAM transcriptome harmonized CPTAC3 c5640b6e-baf4-45a7-a9a1-566ee962b7e3 a5f22fc85a004058206fa396ed657d63 { 'aliquot_tag': 'ALQ_495368b4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01620.RNA-Seq.transcriptome.T.hg38 C3N-01620 HNSCC RNA-Seq tumor CPT0314630011 9bc2d395-3787-419c-90e8-248b144560ba.rna_seq.transcriptome.gdc_realn.bam 6199770569 BAM transcriptome harmonized CPTAC3 90bfa36b-84ba-4605-83c8-ea72b075217e d8117662dc1c75fa5c63ac68da0a4977 { 'aliquot_tag': 'ALQ_e64adf9f', 'gdc_sample_type': 'Primary Tumor' } C3N-01620.WGS.N C3N-01620 HNSCC WGS blood_normal CPT0095090002 CPT0095090002.WholeGenome.RP-1303.bam 66896774235 BAM aligned CPTAC3 be2950b0-5ad6-49cc-b2a0-c9a05c7c4e78 2cde713d7537992a62abdb3b82c8288f { 'aliquot_tag': 'ALQ_b6ae681c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01620.WGS.N.hg38 C3N-01620 HNSCC WGS blood_normal CPT0095090002 af83ea9a-ebb4-4b0b-83c5-c7a546730ab2_wgs_gdc_realn.bam 97682387019 BAM harmonized CPTAC3 4a688896-18be-4b3d-991b-56ccbbf3194e 07901c5080abc7cb23d6a79b5d5f5aa3 { 'aliquot_tag': 'ALQ_b6ae681c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01620.WGS.T C3N-01620 HNSCC WGS tumor CPT0095040008 CPT0095040008.WholeGenome.RP-1303.bam 63742066560 BAM aligned CPTAC3 b7cd1da1-4e04-48fe-a35a-a121a8b6cba8 8092e26f02aefb81c8a10d52728c1f9b { 'aliquot_tag': 'ALQ_aeeb45b3', 'gdc_sample_type': 'Primary Tumor' } @@ -26523,9 +28489,9 @@ C3N-01643.MethArray.Red.T C3N-01643 HNSCC Methylation Array tumor CPT0162890006 C3N-01643.miRNA-Seq.T C3N-01643 HNSCC miRNA-Seq tumor CPT0162890009 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L001_R1_001.unaln.bam 261191417 BAM unaligned CPTAC3 ccbbe05f-2a1f-413e-92c8-1d26b8332f29 96c461b16fb1148efd0513330cb3b33d { 'aliquot_tag': 'ALQ_c6d30b98', 'gdc_sample_type': 'Primary Tumor' } C3N-01643.miRNA-Seq.T.hg38 C3N-01643 HNSCC miRNA-Seq tumor CPT0162890009 eec1b1f0-97e1-4776-8603-8254d9bf0102_mirnaseq_gdc_realn.bam 287219894 BAM harmonized CPTAC3 42a97544-5816-41f7-8613-b5e9d5359d65 1efe295398f3c27a2e9b3c10c041f99f { 'aliquot_tag': 'ALQ_c6d30b98', 'gdc_sample_type': 'Primary Tumor' } C3N-01643.RNA-Seq.chimeric.T.hg38 C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 912e2235-a667-44eb-94f1-74b4e560baf3.rna_seq.chimeric.gdc_realn.bam 83919279 BAM chimeric harmonized CPTAC3 0e55c46a-7cd9-42fb-9c2f-c6d1a9290512 de399206420ed894c3c693623d83240c { 'aliquot_tag': 'ALQ_c6d30b98', 'gdc_sample_type': 'Primary Tumor' } -C3N-01643.RNA-Seq.genomic.T.hg38 C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 912e2235-a667-44eb-94f1-74b4e560baf3.rna_seq.genomic.gdc_realn.bam 6158350661 BAM genomic harmonized CPTAC3 b668af18-adea-4e5b-a917-1103858a46ba fd9f9e4946817f03162e46a0b1ba76e7 { 'aliquot_tag': 'ALQ_c6d30b98', 'gdc_sample_type': 'Primary Tumor' } -C3N-01643.RNA-Seq.R1_L006.T C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTTTCG_S23_L006_R1_001.fastq.gz 2836605120 FASTQ R1_L006 unaligned CPTAC3 5787ea66-4b29-4c37-9164-f9ded1ab6a6c c59c8bb6fbfbfdd264ca9b0679a7f864 { 'aliquot_tag': 'ALQ_c6d30b98', 'gdc_sample_type': 'Primary Tumor' } -C3N-01643.RNA-Seq.R2_L006.T C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTTTCG_S23_L006_R2_001.fastq.gz 3262156883 FASTQ R2_L006 unaligned CPTAC3 c6259c4e-6ad1-4843-bc1b-48fbe4ff210d 11dcbfe4c0b76421381a7912446df746 { 'aliquot_tag': 'ALQ_c6d30b98', 'gdc_sample_type': 'Primary Tumor' } +C3N-01643.RNA-Seq.genomic.T.hg38 C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 912e2235-a667-44eb-94f1-74b4e560baf3.rna_seq.genomic.gdc_realn.bam 6158350661 BAM genomic harmonized CPTAC3 23839b7e-fa9a-4f27-8b82-687070367d9c fd9f9e4946817f03162e46a0b1ba76e7 { 'aliquot_tag': 'ALQ_c6d30b98', 'gdc_sample_type': 'Primary Tumor' } +C3N-01643.RNA-Seq.R1_L006.T C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTTTCG_S23_L006_R1_001.fastq.gz 2836605120 FASTQ R1_L006 unaligned CPTAC3 5787ea66-4b29-4c37-9164-f9ded1ab6a6c c59c8bb6fbfbfdd264ca9b0679a7f864 { 'aliquot_tag': 'ALQ_c6d30b98', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01643.RNA-Seq.R2_L006.T C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTTTCG_S23_L006_R2_001.fastq.gz 3262156883 FASTQ R2_L006 unaligned CPTAC3 c6259c4e-6ad1-4843-bc1b-48fbe4ff210d 11dcbfe4c0b76421381a7912446df746 { 'aliquot_tag': 'ALQ_c6d30b98', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-01643.RNA-Seq.transcriptome.T.hg38 C3N-01643 HNSCC RNA-Seq tumor CPT0162890009 912e2235-a667-44eb-94f1-74b4e560baf3.rna_seq.transcriptome.gdc_realn.bam 8842615098 BAM transcriptome harmonized CPTAC3 981ba168-4ccf-4c6e-9d6f-3fad049cf472 2ad9900f7470ee4b98c8679ff9fe9b09 { 'aliquot_tag': 'ALQ_c6d30b98', 'gdc_sample_type': 'Primary Tumor' } C3N-01643.WGS.N C3N-01643 HNSCC WGS blood_normal CPT0162920002 CPT0162920002.WholeGenome.RP-1303.bam 79784822241 BAM aligned CPTAC3 1e392dc6-1323-4817-9e9f-8cd7a4893065 a27027a04db28f1d9cab397ea6d5e35c { 'aliquot_tag': 'ALQ_ed8d30a4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01643.WGS.N.hg38 C3N-01643 HNSCC WGS blood_normal CPT0162920002 3a523f18-8fae-4b63-ac71-d5c0b95b0170_wgs_gdc_realn.bam 115358783101 BAM harmonized CPTAC3 27bb5c8d-940b-42ca-b219-4d06c7f98195 c7643817bddc5358af51ea8ef7d5f7dc { 'aliquot_tag': 'ALQ_ed8d30a4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26543,12 +28509,12 @@ C3N-01645.miRNA-Seq.T C3N-01645 HNSCC miRNA-Seq tumor CPT0088410006 180724_UNC32 C3N-01645.miRNA-Seq.T.hg38 C3N-01645 HNSCC miRNA-Seq tumor CPT0088410006 df557db2-ee18-42b6-84d9-e178bcdc3981_mirnaseq_gdc_realn.bam 406192942 BAM harmonized CPTAC3 d8a03591-6c7f-4362-8151-b0a7ad36d23b 878c93d8dcbed023ccb23d065d9b4388 { 'aliquot_tag': 'ALQ_b75fc48c', 'gdc_sample_type': 'Primary Tumor' } C3N-01645.RNA-Seq.chimeric.A.hg38 C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 eb61fafa-57ca-4387-b26a-ce832e1ea95c.rna_seq.chimeric.gdc_realn.bam 27030231 BAM chimeric harmonized CPTAC3 a4c84361-5112-4d1b-bbe3-857b2b6a452d f9c7a904011c50952fb38221285a8220 { 'aliquot_tag': 'ALQ_cd9f97ec', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01645.RNA-Seq.chimeric.T.hg38 C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 6529074d-c710-45ab-9d43-9a7f882f50d2.rna_seq.chimeric.gdc_realn.bam 38754967 BAM chimeric harmonized CPTAC3 588a694d-d450-42ab-9a5a-8a91b85fd7f2 f5b3fd8f2c418aa706d1120e4f29961b { 'aliquot_tag': 'ALQ_b75fc48c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01645.RNA-Seq.genomic.A.hg38 C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 eb61fafa-57ca-4387-b26a-ce832e1ea95c.rna_seq.genomic.gdc_realn.bam 9080438046 BAM genomic harmonized CPTAC3 07b341a2-d4f6-416c-ab17-a1672df976b9 74fd1f2ee0bb2136f96c420845dea3dd { 'aliquot_tag': 'ALQ_cd9f97ec', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01645.RNA-Seq.genomic.T.hg38 C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 6529074d-c710-45ab-9d43-9a7f882f50d2.rna_seq.genomic.gdc_realn.bam 9060136674 BAM genomic harmonized CPTAC3 f6811e3e-9d55-487d-a4b1-72f718f57df5 27240e13ae3ec286c3b0df5b069a5815 { 'aliquot_tag': 'ALQ_b75fc48c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01645.RNA-Seq.R1_L003.T C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 171116_UNC31-K00269_0093_BHMFKJBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4328072097 FASTQ R1_L003 unaligned CPTAC3 2048be25-a5d2-4f0a-bed9-ec4a2614235e af791e298c6ec5bbaa6cae5cf25fa40b { 'aliquot_tag': 'ALQ_b75fc48c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01645.RNA-Seq.R1_L005.A C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 180516_UNC31-K00269_0130_BHV22JBBXX_TGACCA_S20_L005_R1_001.fastq.gz 4280442009 FASTQ R1_L005 unaligned CPTAC3 2db2fa96-3234-4ad2-b8e7-b85dba4b294d aa09d7f9c74979669e8c8c2d8c80126d { 'aliquot_tag': 'ALQ_cd9f97ec', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01645.RNA-Seq.R2_L003.T C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 171116_UNC31-K00269_0093_BHMFKJBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 4801207820 FASTQ R2_L003 unaligned CPTAC3 6a644c2f-2ff7-4afd-8668-943578a54d91 b2c34bf02d1f53da2ce981ebf3f9b924 { 'aliquot_tag': 'ALQ_b75fc48c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01645.RNA-Seq.R2_L005.A C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 180516_UNC31-K00269_0130_BHV22JBBXX_TGACCA_S20_L005_R2_001.fastq.gz 4537414006 FASTQ R2_L005 unaligned CPTAC3 b987f708-c205-4346-a37f-1ff39f9cbacc 6079811716e5671e4d3250c5032fed90 { 'aliquot_tag': 'ALQ_cd9f97ec', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01645.RNA-Seq.genomic.A.hg38 C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 eb61fafa-57ca-4387-b26a-ce832e1ea95c.rna_seq.genomic.gdc_realn.bam 9080438046 BAM genomic harmonized CPTAC3 e18cf435-511b-4829-86fd-ebda8f084d2c 74fd1f2ee0bb2136f96c420845dea3dd { 'aliquot_tag': 'ALQ_cd9f97ec', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01645.RNA-Seq.genomic.T.hg38 C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 6529074d-c710-45ab-9d43-9a7f882f50d2.rna_seq.genomic.gdc_realn.bam 9060136674 BAM genomic harmonized CPTAC3 7a62177c-e814-411d-813f-67dc6bcdf746 27240e13ae3ec286c3b0df5b069a5815 { 'aliquot_tag': 'ALQ_b75fc48c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01645.RNA-Seq.R1_L003.T C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 171116_UNC31-K00269_0093_BHMFKJBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4328072097 FASTQ R1_L003 unaligned CPTAC3 2048be25-a5d2-4f0a-bed9-ec4a2614235e af791e298c6ec5bbaa6cae5cf25fa40b { 'aliquot_tag': 'ALQ_b75fc48c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01645.RNA-Seq.R1_L005.A C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 180516_UNC31-K00269_0130_BHV22JBBXX_TGACCA_S20_L005_R1_001.fastq.gz 4280442009 FASTQ R1_L005 unaligned CPTAC3 2db2fa96-3234-4ad2-b8e7-b85dba4b294d aa09d7f9c74979669e8c8c2d8c80126d { 'aliquot_tag': 'ALQ_cd9f97ec', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01645.RNA-Seq.R2_L003.T C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 171116_UNC31-K00269_0093_BHMFKJBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 4801207820 FASTQ R2_L003 unaligned CPTAC3 6a644c2f-2ff7-4afd-8668-943578a54d91 b2c34bf02d1f53da2ce981ebf3f9b924 { 'aliquot_tag': 'ALQ_b75fc48c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01645.RNA-Seq.R2_L005.A C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 180516_UNC31-K00269_0130_BHV22JBBXX_TGACCA_S20_L005_R2_001.fastq.gz 4537414006 FASTQ R2_L005 unaligned CPTAC3 b987f708-c205-4346-a37f-1ff39f9cbacc 6079811716e5671e4d3250c5032fed90 { 'aliquot_tag': 'ALQ_cd9f97ec', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-01645.RNA-Seq.transcriptome.A.hg38 C3N-01645 HNSCC RNA-Seq tissue_normal CPT0088430006 eb61fafa-57ca-4387-b26a-ce832e1ea95c.rna_seq.transcriptome.gdc_realn.bam 12706794641 BAM transcriptome harmonized CPTAC3 078934e7-7d16-4d63-9853-4d888f97b353 f97f677f588b9afe4cbfed901cb4bbc3 { 'aliquot_tag': 'ALQ_cd9f97ec', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01645.RNA-Seq.transcriptome.T.hg38 C3N-01645 HNSCC RNA-Seq tumor CPT0088410006 6529074d-c710-45ab-9d43-9a7f882f50d2.rna_seq.transcriptome.gdc_realn.bam 13003250462 BAM transcriptome harmonized CPTAC3 bb2b0254-62c4-4d14-ab75-2c20b9d23175 6130116f2b323174e32d14e559b2b0bf { 'aliquot_tag': 'ALQ_b75fc48c', 'gdc_sample_type': 'Primary Tumor' } C3N-01645.WGS.N C3N-01645 HNSCC WGS blood_normal CPT0088470002 CPT0088470002.WholeGenome.RP-1303.bam 63333267290 BAM aligned CPTAC3 19bf5c59-a749-4e57-ac5d-0d256e6c2e3a 02ea333624fc62f39b237edea3f054e9 { 'aliquot_tag': 'ALQ_3f72f535', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26569,12 +28535,12 @@ C3N-01646.miRNA-Seq.T C3N-01646 CCRCC miRNA-Seq tumor CPT0088480006 181012_UNC32 C3N-01646.miRNA-Seq.T.hg38 C3N-01646 CCRCC miRNA-Seq tumor CPT0088480006 608319b0-b2c1-43b5-8c73-5e0d41ea272a_mirnaseq_gdc_realn.bam 198060449 BAM harmonized CPTAC3 c3835a5a-8a99-4a58-a773-6cedee135994 d620a02e131766b5d50f9b3d0c8344db { 'aliquot_tag': 'ALQ_ba4fa6fd', 'gdc_sample_type': 'Primary Tumor' } C3N-01646.RNA-Seq.chimeric.A.hg38 C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 fb3d16e9-fd7c-4f3b-9e4e-6bf68a712d43.rna_seq.chimeric.gdc_realn.bam 68561196 BAM chimeric harmonized CPTAC3 b4bacfb8-e6f7-49c4-8908-46693848bf09 bf187d7a0600d93744cebdbcf4bf1f9c { 'aliquot_tag': 'ALQ_41633e99', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01646.RNA-Seq.chimeric.T.hg38 C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 9b76817e-368c-4d08-b273-1909eb144368.rna_seq.chimeric.gdc_realn.bam 37570182 BAM chimeric harmonized CPTAC3 3ad3f01d-55ff-4157-9ef9-2f4fab1b2d71 f952f101a803d086916259955b48a125 { 'aliquot_tag': 'ALQ_ba4fa6fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-01646.RNA-Seq.genomic.A.hg38 C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 fb3d16e9-fd7c-4f3b-9e4e-6bf68a712d43.rna_seq.genomic.gdc_realn.bam 6192725491 BAM genomic harmonized CPTAC3 5b52ad83-82ea-43bf-959b-69abf06d2065 20a162051585286a94310dc8480fc32c { 'aliquot_tag': 'ALQ_41633e99', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01646.RNA-Seq.genomic.T.hg38 C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 9b76817e-368c-4d08-b273-1909eb144368.rna_seq.genomic.gdc_realn.bam 7290168999 BAM genomic harmonized CPTAC3 5a7ff696-4862-400c-8347-955b611e953c 90d67b517f9b43ca1d2f7e60d5875656 { 'aliquot_tag': 'ALQ_ba4fa6fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-01646.RNA-Seq.R1_L005.T C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGAAA_S18_L005_R1_001.fastq.gz 3695613331 FASTQ R1_L005 unaligned CPTAC3 39cc7d92-b8fc-483b-a7e6-aa8e17b1173f 93138411acaca7710434ff51a9bd1a31 { 'aliquot_tag': 'ALQ_ba4fa6fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-01646.RNA-Seq.R1_L008.A C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L008_R1_001.fastq.gz 3127975323 FASTQ R1_L008 unaligned CPTAC3 64c20469-68d8-457c-92e4-a6c393f71166 2af549a10111c6ad95800a52b06ebf75 { 'aliquot_tag': 'ALQ_41633e99', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01646.RNA-Seq.R2_L005.T C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGAAA_S18_L005_R2_001.fastq.gz 3804275294 FASTQ R2_L005 unaligned CPTAC3 0bfa3487-2ce2-406f-b484-badbbed737e0 8755dc95b11a61aed07f1ec0bf57ec6a { 'aliquot_tag': 'ALQ_ba4fa6fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-01646.RNA-Seq.R2_L008.A C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L008_R2_001.fastq.gz 3340280919 FASTQ R2_L008 unaligned CPTAC3 2eff898e-bd0f-4274-82fe-e8862845720a aec035c90a49da35818cf5bbd14ab1eb { 'aliquot_tag': 'ALQ_41633e99', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01646.RNA-Seq.genomic.A.hg38 C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 fb3d16e9-fd7c-4f3b-9e4e-6bf68a712d43.rna_seq.genomic.gdc_realn.bam 6192725491 BAM genomic harmonized CPTAC3 49b7c885-4816-489c-a4e3-c5d238bf0224 20a162051585286a94310dc8480fc32c { 'aliquot_tag': 'ALQ_41633e99', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01646.RNA-Seq.genomic.T.hg38 C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 9b76817e-368c-4d08-b273-1909eb144368.rna_seq.genomic.gdc_realn.bam 7290168999 BAM genomic harmonized CPTAC3 b8a37405-49cf-4cbc-90f7-012bc4567568 90d67b517f9b43ca1d2f7e60d5875656 { 'aliquot_tag': 'ALQ_ba4fa6fd', 'gdc_sample_type': 'Primary Tumor' } +C3N-01646.RNA-Seq.R1_L005.T C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGAAA_S18_L005_R1_001.fastq.gz 3695613331 FASTQ R1_L005 unaligned CPTAC3 39cc7d92-b8fc-483b-a7e6-aa8e17b1173f 93138411acaca7710434ff51a9bd1a31 { 'aliquot_tag': 'ALQ_ba4fa6fd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01646.RNA-Seq.R1_L008.A C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L008_R1_001.fastq.gz 3127975323 FASTQ R1_L008 unaligned CPTAC3 64c20469-68d8-457c-92e4-a6c393f71166 2af549a10111c6ad95800a52b06ebf75 { 'aliquot_tag': 'ALQ_41633e99', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01646.RNA-Seq.R2_L005.T C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGAAA_S18_L005_R2_001.fastq.gz 3804275294 FASTQ R2_L005 unaligned CPTAC3 0bfa3487-2ce2-406f-b484-badbbed737e0 8755dc95b11a61aed07f1ec0bf57ec6a { 'aliquot_tag': 'ALQ_ba4fa6fd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01646.RNA-Seq.R2_L008.A C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L008_R2_001.fastq.gz 3340280919 FASTQ R2_L008 unaligned CPTAC3 2eff898e-bd0f-4274-82fe-e8862845720a aec035c90a49da35818cf5bbd14ab1eb { 'aliquot_tag': 'ALQ_41633e99', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-01646.RNA-Seq.transcriptome.A.hg38 C3N-01646 CCRCC RNA-Seq tissue_normal CPT0088500006 fb3d16e9-fd7c-4f3b-9e4e-6bf68a712d43.rna_seq.transcriptome.gdc_realn.bam 7880643956 BAM transcriptome harmonized CPTAC3 4582476b-2482-47a2-b46b-8dc3aca29ea8 7c494e8d2e04f90dd73af380ac6dcbb0 { 'aliquot_tag': 'ALQ_41633e99', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01646.RNA-Seq.transcriptome.T.hg38 C3N-01646 CCRCC RNA-Seq tumor CPT0088480006 9b76817e-368c-4d08-b273-1909eb144368.rna_seq.transcriptome.gdc_realn.bam 10756893923 BAM transcriptome harmonized CPTAC3 a0bc2d4f-4e72-4bab-ae76-29b6c01b7129 3110f267ab2102f2d18a3fb72908e5cd { 'aliquot_tag': 'ALQ_ba4fa6fd', 'gdc_sample_type': 'Primary Tumor' } C3N-01646.WGS.A C3N-01646 CCRCC WGS tissue_normal CPT0088500009 CPT0088500009.WholeGenome.RP-1303.bam 59516633791 BAM aligned CPTAC3 1b73486d-0797-42ab-adb6-b88d5bba2c15 e40448b298e95aeb4eeecf4b8639ee4a { 'aliquot_tag': 'ALQ_d1dc2308', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -26599,12 +28565,12 @@ C3N-01648.miRNA-Seq.T C3N-01648 CCRCC miRNA-Seq tumor CPT0088550007 181012_UNC32 C3N-01648.miRNA-Seq.T.hg38 C3N-01648 CCRCC miRNA-Seq tumor CPT0088550007 56adbedb-e0ac-4910-a409-17cfccd07127_mirnaseq_gdc_realn.bam 190146724 BAM harmonized CPTAC3 32618a38-831a-4317-bcf8-99bd7f1bf27b a2adf895cf38e0ff5fe3e42ae15030b0 { 'aliquot_tag': 'ALQ_fe84817f', 'gdc_sample_type': 'Primary Tumor' } C3N-01648.RNA-Seq.chimeric.A.hg38 C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 293d3fd6-807c-4a5f-8c6c-555589665c3c.rna_seq.chimeric.gdc_realn.bam 65262778 BAM chimeric harmonized CPTAC3 e8abdff5-23dc-404e-a3c2-39e26ee4a2ac 4eca7c47c7cf5145b6d04910798db6ea { 'aliquot_tag': 'ALQ_f343e289', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01648.RNA-Seq.chimeric.T.hg38 C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 8a9cb451-9e22-4d13-9686-b1126258ea76.rna_seq.chimeric.gdc_realn.bam 36497596 BAM chimeric harmonized CPTAC3 e7197e45-afe3-46df-b79c-ab15a7399ab6 6d4ef8bd7aa7ec58fd1d46b381d392c1 { 'aliquot_tag': 'ALQ_fe84817f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01648.RNA-Seq.genomic.A.hg38 C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 293d3fd6-807c-4a5f-8c6c-555589665c3c.rna_seq.genomic.gdc_realn.bam 7007394436 BAM genomic harmonized CPTAC3 19b7f345-1838-49bb-a91e-e4f03b1ef54d 8e3d6f8a094918555fc37b720eb380d5 { 'aliquot_tag': 'ALQ_f343e289', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01648.RNA-Seq.genomic.T.hg38 C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 8a9cb451-9e22-4d13-9686-b1126258ea76.rna_seq.genomic.gdc_realn.bam 9444207940 BAM genomic harmonized CPTAC3 43911d78-fbf8-4bc2-834f-e4493dccdd05 4df01c8dd272d6e751081436eae559b0 { 'aliquot_tag': 'ALQ_fe84817f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01648.RNA-Seq.R1_L005.T C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGGCC_S17_L005_R1_001.fastq.gz 4240006926 FASTQ R1_L005 unaligned CPTAC3 24adcbff-dc8f-4a2a-8743-5d5af999a137 ef76cc726694dcea62b25d78678cf85d { 'aliquot_tag': 'ALQ_fe84817f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01648.RNA-Seq.R1_L008.A C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L008_R1_001.fastq.gz 3426035225 FASTQ R1_L008 unaligned CPTAC3 c1eb992a-cd8b-4162-bb59-8445736dd867 220a3f6cf7600331f124101f9a12ad2e { 'aliquot_tag': 'ALQ_f343e289', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01648.RNA-Seq.R2_L005.T C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGGCC_S17_L005_R2_001.fastq.gz 4582286319 FASTQ R2_L005 unaligned CPTAC3 c6759e84-3d9a-4b41-b56d-027275d0566e cb306f67d09b5f4d28402ed5118704e1 { 'aliquot_tag': 'ALQ_fe84817f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01648.RNA-Seq.R2_L008.A C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L008_R2_001.fastq.gz 3670632289 FASTQ R2_L008 unaligned CPTAC3 d6133ac8-3651-4422-b367-0d4ef7809290 c99cbf0152974aa7c2bf28d61a33b767 { 'aliquot_tag': 'ALQ_f343e289', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01648.RNA-Seq.genomic.A.hg38 C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 293d3fd6-807c-4a5f-8c6c-555589665c3c.rna_seq.genomic.gdc_realn.bam 7007394436 BAM genomic harmonized CPTAC3 0bb51a5b-c106-451a-bfaf-278e278fd2b1 8e3d6f8a094918555fc37b720eb380d5 { 'aliquot_tag': 'ALQ_f343e289', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01648.RNA-Seq.genomic.T.hg38 C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 8a9cb451-9e22-4d13-9686-b1126258ea76.rna_seq.genomic.gdc_realn.bam 9444207940 BAM genomic harmonized CPTAC3 b9e16501-2e44-4b48-9525-5a17c88d8baf 4df01c8dd272d6e751081436eae559b0 { 'aliquot_tag': 'ALQ_fe84817f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01648.RNA-Seq.R1_L005.T C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGGCC_S17_L005_R1_001.fastq.gz 4240006926 FASTQ R1_L005 unaligned CPTAC3 24adcbff-dc8f-4a2a-8743-5d5af999a137 ef76cc726694dcea62b25d78678cf85d { 'aliquot_tag': 'ALQ_fe84817f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01648.RNA-Seq.R1_L008.A C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L008_R1_001.fastq.gz 3426035225 FASTQ R1_L008 unaligned CPTAC3 c1eb992a-cd8b-4162-bb59-8445736dd867 220a3f6cf7600331f124101f9a12ad2e { 'aliquot_tag': 'ALQ_f343e289', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01648.RNA-Seq.R2_L005.T C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 170908_UNC31-K00269_0080_BHLJ52BBXX_GTGGCC_S17_L005_R2_001.fastq.gz 4582286319 FASTQ R2_L005 unaligned CPTAC3 c6759e84-3d9a-4b41-b56d-027275d0566e cb306f67d09b5f4d28402ed5118704e1 { 'aliquot_tag': 'ALQ_fe84817f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01648.RNA-Seq.R2_L008.A C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 171215_UNC32-K00270_0072_AHN3THBBXX_GCCAAT_S7_L008_R2_001.fastq.gz 3670632289 FASTQ R2_L008 unaligned CPTAC3 d6133ac8-3651-4422-b367-0d4ef7809290 c99cbf0152974aa7c2bf28d61a33b767 { 'aliquot_tag': 'ALQ_f343e289', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-01648.RNA-Seq.transcriptome.A.hg38 C3N-01648 CCRCC RNA-Seq tissue_normal CPT0088570006 293d3fd6-807c-4a5f-8c6c-555589665c3c.rna_seq.transcriptome.gdc_realn.bam 8079394608 BAM transcriptome harmonized CPTAC3 487c5fa4-f521-4649-a43a-0f99800fde5d 378ac7f36ab15a00090069961f89c147 { 'aliquot_tag': 'ALQ_f343e289', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01648.RNA-Seq.transcriptome.T.hg38 C3N-01648 CCRCC RNA-Seq tumor CPT0088550007 8a9cb451-9e22-4d13-9686-b1126258ea76.rna_seq.transcriptome.gdc_realn.bam 11909719096 BAM transcriptome harmonized CPTAC3 2ba62195-c367-4e72-952f-1e828a012ee9 019d9a10489baca1da00e453898bfd8a { 'aliquot_tag': 'ALQ_fe84817f', 'gdc_sample_type': 'Primary Tumor' } C3N-01648.WGS.A C3N-01648 CCRCC WGS tissue_normal CPT0088570009 CPT0088570009.WholeGenome.RP-1303.bam 75332671437 BAM aligned CPTAC3 03e9fe44-c001-442f-8b18-60c8e6d8575e 246bac268aefdef58bfd3fba83116867 { 'aliquot_tag': 'ALQ_63fcff18', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -26629,12 +28595,12 @@ C3N-01649.miRNA-Seq.T C3N-01649 CCRCC miRNA-Seq tumor CPT0088630006 180724_UNC32 C3N-01649.miRNA-Seq.T.hg38 C3N-01649 CCRCC miRNA-Seq tumor CPT0088630006 117223ec-83d6-49ca-a128-6727c4ba1953_mirnaseq_gdc_realn.bam 306528815 BAM harmonized CPTAC3 758731cd-26a1-4ef5-98f4-fe76027da0e9 f65d329fa0fcc5bf9d26e1ac1990db4b { 'aliquot_tag': 'ALQ_805736e7', 'gdc_sample_type': 'Primary Tumor' } C3N-01649.RNA-Seq.chimeric.A.hg38 C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 e8f1dd0a-679c-4c82-be87-615c06853e6a.rna_seq.chimeric.gdc_realn.bam 87264765 BAM chimeric harmonized CPTAC3 5d35fae3-fd52-4002-9403-b560d6b14371 e363c1a62f6b2a7be0248953a0bd5c14 { 'aliquot_tag': 'ALQ_3277eaf7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01649.RNA-Seq.chimeric.T.hg38 C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 38125362-4493-43e0-a2e8-26b0fa4bc239.rna_seq.chimeric.gdc_realn.bam 51732305 BAM chimeric harmonized CPTAC3 397d1a29-c691-4174-a9dd-73b22b44fa16 644e5433a7370222504b9bd81d058f2d { 'aliquot_tag': 'ALQ_805736e7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01649.RNA-Seq.genomic.A.hg38 C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 e8f1dd0a-679c-4c82-be87-615c06853e6a.rna_seq.genomic.gdc_realn.bam 8099689166 BAM genomic harmonized CPTAC3 7a9dedbe-9a72-4795-babb-59d98164d2fd 3ca5b57cd3edb06afa009e31575cced1 { 'aliquot_tag': 'ALQ_3277eaf7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01649.RNA-Seq.genomic.T.hg38 C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 38125362-4493-43e0-a2e8-26b0fa4bc239.rna_seq.genomic.gdc_realn.bam 7988536240 BAM genomic harmonized CPTAC3 3370986c-66e6-4c9a-be7a-9f9b13335eb4 92e17939bb6bf3f18dcbe67dd1b9b71b { 'aliquot_tag': 'ALQ_805736e7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01649.RNA-Seq.R1_L003.A C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 171205_UNC32-K00270_0069_BHN2HGBBXX_CTTGTA_S10_L003_R1_001.fastq.gz 4104281655 FASTQ R1_L003 unaligned CPTAC3 244632b6-4344-40a5-a109-1722407dcac7 eaade7d5a3c454ee497ba5e58566be32 { 'aliquot_tag': 'ALQ_3277eaf7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01649.RNA-Seq.R1_L004.T C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 171116_UNC31-K00269_0093_BHMFKJBBXX_CAGATC_S13_L004_R1_001.fastq.gz 4059212713 FASTQ R1_L004 unaligned CPTAC3 54772596-255c-4ee9-8c6d-ada8cd925b89 c685dcd5210dc4131fef0d0402c8229c { 'aliquot_tag': 'ALQ_805736e7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01649.RNA-Seq.R2_L003.A C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 171205_UNC32-K00270_0069_BHN2HGBBXX_CTTGTA_S10_L003_R2_001.fastq.gz 4343477631 FASTQ R2_L003 unaligned CPTAC3 904e8d63-793c-47d7-827d-dd70047ad802 3222a596a7dd8e4d9348ec070f927c91 { 'aliquot_tag': 'ALQ_3277eaf7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01649.RNA-Seq.R2_L004.T C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 171116_UNC31-K00269_0093_BHMFKJBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4501956761 FASTQ R2_L004 unaligned CPTAC3 2669c684-bde7-49eb-8441-0500102d3b9b 98190d505ad6c8691e8ad0cdf686196a { 'aliquot_tag': 'ALQ_805736e7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01649.RNA-Seq.genomic.A.hg38 C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 e8f1dd0a-679c-4c82-be87-615c06853e6a.rna_seq.genomic.gdc_realn.bam 8099689166 BAM genomic harmonized CPTAC3 a97bead8-cdf4-4d5b-9368-9b6da347967c 3ca5b57cd3edb06afa009e31575cced1 { 'aliquot_tag': 'ALQ_3277eaf7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01649.RNA-Seq.genomic.T.hg38 C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 38125362-4493-43e0-a2e8-26b0fa4bc239.rna_seq.genomic.gdc_realn.bam 7988536240 BAM genomic harmonized CPTAC3 26f0c8bf-3383-45e9-9435-8b01c9005dfd 92e17939bb6bf3f18dcbe67dd1b9b71b { 'aliquot_tag': 'ALQ_805736e7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01649.RNA-Seq.R1_L003.A C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 171205_UNC32-K00270_0069_BHN2HGBBXX_CTTGTA_S10_L003_R1_001.fastq.gz 4104281655 FASTQ R1_L003 unaligned CPTAC3 244632b6-4344-40a5-a109-1722407dcac7 eaade7d5a3c454ee497ba5e58566be32 { 'aliquot_tag': 'ALQ_3277eaf7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01649.RNA-Seq.R1_L004.T C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 171116_UNC31-K00269_0093_BHMFKJBBXX_CAGATC_S13_L004_R1_001.fastq.gz 4059212713 FASTQ R1_L004 unaligned CPTAC3 54772596-255c-4ee9-8c6d-ada8cd925b89 c685dcd5210dc4131fef0d0402c8229c { 'aliquot_tag': 'ALQ_805736e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01649.RNA-Seq.R2_L003.A C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 171205_UNC32-K00270_0069_BHN2HGBBXX_CTTGTA_S10_L003_R2_001.fastq.gz 4343477631 FASTQ R2_L003 unaligned CPTAC3 904e8d63-793c-47d7-827d-dd70047ad802 3222a596a7dd8e4d9348ec070f927c91 { 'aliquot_tag': 'ALQ_3277eaf7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-01649.RNA-Seq.R2_L004.T C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 171116_UNC31-K00269_0093_BHMFKJBBXX_CAGATC_S13_L004_R2_001.fastq.gz 4501956761 FASTQ R2_L004 unaligned CPTAC3 2669c684-bde7-49eb-8441-0500102d3b9b 98190d505ad6c8691e8ad0cdf686196a { 'aliquot_tag': 'ALQ_805736e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-01649.RNA-Seq.transcriptome.A.hg38 C3N-01649 CCRCC RNA-Seq tissue_normal CPT0088640006 e8f1dd0a-679c-4c82-be87-615c06853e6a.rna_seq.transcriptome.gdc_realn.bam 10017547042 BAM transcriptome harmonized CPTAC3 9608561c-63d5-44c4-83eb-0c575b5968a2 6ba4b8d7b48ee030dba6b3abe27d3b8b { 'aliquot_tag': 'ALQ_3277eaf7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01649.RNA-Seq.transcriptome.T.hg38 C3N-01649 CCRCC RNA-Seq tumor CPT0088630006 38125362-4493-43e0-a2e8-26b0fa4bc239.rna_seq.transcriptome.gdc_realn.bam 10554330597 BAM transcriptome harmonized CPTAC3 26c75255-cfd8-4c70-bc66-d450a4392463 a7968c35f131ec856c363f1d58b46492 { 'aliquot_tag': 'ALQ_805736e7', 'gdc_sample_type': 'Primary Tumor' } C3N-01649.WGS.A C3N-01649 CCRCC WGS tissue_normal CPT0088640009 CPT0088640009.WholeGenome.RP-1303.bam 59421941243 BAM aligned CPTAC3 4ddd5eff-c02d-47c5-ae99-f3a15e354ea7 4dc750f6163e12aabe0c979364bedbe5 { 'aliquot_tag': 'ALQ_a2c8f766', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -26658,20 +28624,25 @@ C3N-01650.miRNA-Seq.A.hg38 C3N-01650 CCRCC miRNA-Seq tissue_normal CPT0380430006 C3N-01650.miRNA-Seq.T C3N-01650 CCRCC miRNA-Seq tumor CPT0380400006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GCCAAT_S45_L003_R1_001.unaln.bam 304111463 BAM unaligned CPTAC3 08be98f6-956e-460e-891c-919092233557 9a2e3dbd24833c649a0bc8e83d9cd234 { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor' } C3N-01650.miRNA-Seq.T.hg38 C3N-01650 CCRCC miRNA-Seq tumor CPT0380400006 6f2065ab-0168-43ea-b54e-3fa1b5fdf165_mirnaseq_gdc_realn.bam 333061547 BAM harmonized CPTAC3 7abf3a33-5078-49ac-91f3-e68c9ec1be49 232816d200631564b29ee0c435a94f96 { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor' } C3N-01650.REP_b9c58330.WGS.N C3N-01650 CCRCC WGS blood_normal CPT0405290002 CPT0405290002.WholeGenome.RP-2158.bam 30822501470 BAM aligned CPTAC3 dd1e8570-14d4-4844-9d12-686e060081e1 fdae4acfe4e0b40692a17149f77806d4 { 'aliquot_tag': 'REP_b9c58330', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } +C3N-01650.REP_b9c58330.WGS.N.hg38 C3N-01650 CCRCC WGS blood_normal CPT0405290002 8cac4a04-a819-4b46-9a3f-6c5253adfead_wgs_gdc_realn.bam 92130625198 BAM harmonized CPTAC3 bb22ed95-d227-4799-b7fa-a89ba5e14e6a f78fc93daaf07b344924b92241033926 { 'aliquot_tag': 'REP_b9c58330', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } C3N-01650.REP_b9c58330.WXS.N C3N-01650 CCRCC WXS blood_normal CPT0405290002 CPT0405290002.WholeExome.RP-1303.bam 24270791634 BAM aligned CPTAC3 25a8f704-b312-4ffe-98cb-0f01a1e82a99 41d557b2410d8d37c9cbbf36e27b593a { 'aliquot_tag': 'REP_b9c58330', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } -C3N-01650.RNA-Seq.chimeric.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 89b6b678-4536-4a12-a776-94a85203c4fd.rna_seq.chimeric.gdc_realn.bam 187535229 BAM chimeric harmonized CPTAC3 eca59675-e774-40cd-936f-a6a5f1fe46bf 2b199a64164ff4c8c4f4a468f505f00a { 'aliquot_tag': 'ALQ_c7fde54e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01650.RNA-Seq.chimeric.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 5a3f4812-3af6-49c5-bb86-61e7f6f49a61.rna_seq.chimeric.gdc_realn.bam 221351020 BAM chimeric harmonized CPTAC3 6f6f1251-8909-4ead-acbb-dcaf5693ec0a bb99f6786cc9608e237491537a4b2e6d { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01650.RNA-Seq.genomic.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 89b6b678-4536-4a12-a776-94a85203c4fd.rna_seq.genomic.gdc_realn.bam 10499629317 BAM genomic harmonized CPTAC3 c88da4a8-b657-4651-8243-4b90a9b3f48e dcf83295a46796a57a2d8fe9da91d5dc { 'aliquot_tag': 'ALQ_c7fde54e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01650.RNA-Seq.genomic.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 5a3f4812-3af6-49c5-bb86-61e7f6f49a61.rna_seq.genomic.gdc_realn.bam 9192068087 BAM genomic harmonized CPTAC3 58eb4e78-107f-418c-bc05-3fb64ed2fa74 ee91c6e4bfd5d0fe48600f17409601bc { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01650.RNA-Seq.R1_L001.A C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 210318_UNC32-K00270_0277_AHKNTVBBXY_CAAGCTAG-ACATAGCG_S2_L001_R1_001.fastq.gz 5245546118 FASTQ R1_L001 unaligned CPTAC3 e1f86a4f-679d-43c4-808c-52b6b50136fa 4a37afce687375ef0e260c3762c17c0f { 'aliquot_tag': 'ALQ_c7fde54e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01650.RNA-Seq.R1_L001.T C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 210318_UNC32-K00270_0277_AHKNTVBBXY_GCTTGTCA-GAACATAC_S3_L001_R1_001.fastq.gz 4423994673 FASTQ R1_L001 unaligned CPTAC3 d50b8cfe-8a29-43c2-84d9-33bcb19e5e0b 82755b62bc3ed210ee9b467752b06beb { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01650.RNA-Seq.R2_L001.A C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 210318_UNC32-K00270_0277_AHKNTVBBXY_CAAGCTAG-ACATAGCG_S2_L001_R2_001.fastq.gz 5938717101 FASTQ R2_L001 unaligned CPTAC3 740adb26-90b7-4c14-830f-34471fc12d5f 9d0636d2e438a06af69b3127add49b17 { 'aliquot_tag': 'ALQ_c7fde54e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01650.RNA-Seq.R2_L001.T C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 210318_UNC32-K00270_0277_AHKNTVBBXY_GCTTGTCA-GAACATAC_S3_L001_R2_001.fastq.gz 5036629853 FASTQ R2_L001 unaligned CPTAC3 c1ca4303-338e-49b1-b3ef-d1c53ad1e996 554be517a5523bba8576946f1063b17c { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01650.RNA-Seq.transcriptome.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 89b6b678-4536-4a12-a776-94a85203c4fd.rna_seq.transcriptome.gdc_realn.bam 10897024018 BAM transcriptome harmonized CPTAC3 cdb49a2e-4180-44cf-8036-2d1a731c87bd 63948ad8ed1279a6194028c328eabfec { 'aliquot_tag': 'ALQ_c7fde54e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01650.RNA-Seq.transcriptome.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 5a3f4812-3af6-49c5-bb86-61e7f6f49a61.rna_seq.transcriptome.gdc_realn.bam 10687070165 BAM transcriptome harmonized CPTAC3 d47ec5bc-be5d-411d-8580-f1a6551d436b 3bfa53938602d1430f03ed8e1a464e92 { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01650.REP_b9c58330.WXS.N.hg38 C3N-01650 CCRCC WXS blood_normal CPT0405290002 8cac4a04-a819-4b46-9a3f-6c5253adfead_wxs_gdc_realn.bam 33441333356 BAM harmonized CPTAC3 3746b654-54f1-4e28-a9a8-c90efb7910fc 9550e93d2156e5e2ce96dcded4a82913 { 'aliquot_tag': 'REP_b9c58330', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } +C3N-01650.RNA-Seq.chimeric.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 676df6bf-ea54-4b94-99e8-6767d479ec2e.rna_seq.chimeric.gdc_realn.bam 187551074 BAM chimeric harmonized CPTAC3 a4fe1589-770a-4d24-a308-257065152c30 c499574d1a5ddda2704feacd3b02ddaa { 'aliquot_tag': 'ALQ_c7fde54e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01650.RNA-Seq.chimeric.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 15083240-7e51-4f9c-93e6-6b6a0282fd21.rna_seq.chimeric.gdc_realn.bam 221351059 BAM chimeric harmonized CPTAC3 4cdb2abe-e810-45ac-b915-543bfe29a209 b604aa9a113f0ae9d1e1b6a314d680b3 { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01650.RNA-Seq.genomic.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 676df6bf-ea54-4b94-99e8-6767d479ec2e.rna_seq.genomic.gdc_realn.bam 10506503109 BAM genomic harmonized CPTAC3 630e4381-7a26-41bf-aadc-1d52d534261a 713d62d94535b6f49e4eb600eac00b1f { 'aliquot_tag': 'ALQ_c7fde54e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01650.RNA-Seq.genomic.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 15083240-7e51-4f9c-93e6-6b6a0282fd21.rna_seq.genomic.gdc_realn.bam 9199312598 BAM genomic harmonized CPTAC3 8dcd0a73-4f87-4cd5-943a-74f9fda3577b 9e1ba7e880c55e60129535fad009c1c9 { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01650.RNA-Seq.R1_L001.A C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 210318_UNC32-K00270_0277_AHKNTVBBXY_CAAGCTAG-ACATAGCG_S2_L001_R1_001.fastq.gz 5245546118 FASTQ R1_L001 unaligned CPTAC3 e1f86a4f-679d-43c4-808c-52b6b50136fa 4a37afce687375ef0e260c3762c17c0f { 'aliquot_tag': 'ALQ_c7fde54e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01650.RNA-Seq.R1_L001.T C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 210318_UNC32-K00270_0277_AHKNTVBBXY_GCTTGTCA-GAACATAC_S3_L001_R1_001.fastq.gz 4423994673 FASTQ R1_L001 unaligned CPTAC3 d50b8cfe-8a29-43c2-84d9-33bcb19e5e0b 82755b62bc3ed210ee9b467752b06beb { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01650.RNA-Seq.R2_L001.A C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 210318_UNC32-K00270_0277_AHKNTVBBXY_CAAGCTAG-ACATAGCG_S2_L001_R2_001.fastq.gz 5938717101 FASTQ R2_L001 unaligned CPTAC3 740adb26-90b7-4c14-830f-34471fc12d5f 9d0636d2e438a06af69b3127add49b17 { 'aliquot_tag': 'ALQ_c7fde54e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01650.RNA-Seq.R2_L001.T C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 210318_UNC32-K00270_0277_AHKNTVBBXY_GCTTGTCA-GAACATAC_S3_L001_R2_001.fastq.gz 5036629853 FASTQ R2_L001 unaligned CPTAC3 c1ca4303-338e-49b1-b3ef-d1c53ad1e996 554be517a5523bba8576946f1063b17c { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01650.RNA-Seq.transcriptome.A.hg38 C3N-01650 CCRCC RNA-Seq tissue_normal CPT0380430006 676df6bf-ea54-4b94-99e8-6767d479ec2e.rna_seq.transcriptome.gdc_realn.bam 12538976935 BAM transcriptome harmonized CPTAC3 62133981-2025-45a4-8704-56ba987e5874 39577cfc312f3de02c62964b60a26cd3 { 'aliquot_tag': 'ALQ_c7fde54e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01650.RNA-Seq.transcriptome.T.hg38 C3N-01650 CCRCC RNA-Seq tumor CPT0380400006 15083240-7e51-4f9c-93e6-6b6a0282fd21.rna_seq.transcriptome.gdc_realn.bam 12307207647 BAM transcriptome harmonized CPTAC3 c7a8fb43-dae0-4831-8d09-842ff15b93d5 687f0b294d89444375565d6c9cc44245 { 'aliquot_tag': 'ALQ_805d9f9e', 'gdc_sample_type': 'Primary Tumor' } C3N-01650.WGS.T C3N-01650 CCRCC WGS tumor CPT0380400009 CPT0380400009.WholeGenome.RP-2158.bam 33958855932 BAM aligned CPTAC3 b9e32941-e0f1-48ad-9894-f6ede04d846d 5b8f5837718235b37f39134c2050ea76 { 'aliquot_tag': 'ALQ_10e2820f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01650.WGS.T.hg38 C3N-01650 CCRCC WGS tumor CPT0380400009 83d01696-846d-4d55-8727-fe99cace5077_wgs_gdc_realn.bam 102351745528 BAM harmonized CPTAC3 65b7bf65-9bb3-4d0c-a205-24c0be5c0fb1 950a388e50c7ab874a295210114b2dd5 { 'aliquot_tag': 'ALQ_10e2820f', 'gdc_sample_type': 'Primary Tumor' } C3N-01650.WXS.A C3N-01650 CCRCC WXS tissue_normal CPT0380430009 CPT0380430009.WholeExome.RP-1303.bam 23116301738 BAM aligned CPTAC3 7a5ea787-8b09-4f48-bcac-65c3a6470de8 855d368f3bb8f17984dd62061dec8ac7 { 'aliquot_tag': 'ALQ_5742f8df', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01650.WXS.A.hg38 C3N-01650 CCRCC WXS tissue_normal CPT0380430009 36950092-de15-4ece-a714-9bf64a051429_wxs_gdc_realn.bam 31729390305 BAM harmonized CPTAC3 09909ee0-682d-4fc3-9b67-bb6192bc3a6b 53128ab9db592bb42bc7ac9260e85198 { 'aliquot_tag': 'ALQ_5742f8df', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01650.WXS.T C3N-01650 CCRCC WXS tumor CPT0380400009 CPT0380400009.WholeExome.RP-1303.bam 21551619374 BAM aligned CPTAC3 ef003874-6376-4fd6-9d77-e5bb1c84d150 22e100a4a18d043aa5b171ec8ed570b6 { 'aliquot_tag': 'ALQ_10e2820f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01650.WXS.T.hg38 C3N-01650 CCRCC WXS tumor CPT0380400009 83d01696-846d-4d55-8727-fe99cace5077_wxs_gdc_realn.bam 29826762816 BAM harmonized CPTAC3 0191f870-6fa3-4dc0-8f2f-a48ae057b813 b5420dcb870c11d0390311e3043a5507 { 'aliquot_tag': 'ALQ_10e2820f', 'gdc_sample_type': 'Primary Tumor' } C3N-01651.MethArray.Green.A C3N-01651 CCRCC Methylation Array tissue_normal CPT0088710009 204930640041_R04C01_Grn.idat 13677885 IDAT Green NA CPTAC3 7691f6c2-f580-4c00-a0d6-ffb9c12bc0f7 2ad0dff0e8ed6b07ba7fddaa43df2498 { 'aliquot_tag': 'ALQ_a174abb3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01651.MethArray.Green.T C3N-01651 CCRCC Methylation Array tumor CPT0088690009 202176290145_R05C01_Grn.idat 13676225 IDAT Green NA CPTAC3 4665466b-9645-4728-b73e-ef0d79234982 f559f1cdeaeaa652efb01da728e44296 { 'aliquot_tag': 'ALQ_5a5833d7', 'gdc_sample_type': 'Primary Tumor' } C3N-01651.MethArray.Red.A C3N-01651 CCRCC Methylation Array tissue_normal CPT0088710009 204930640041_R04C01_Red.idat 13677885 IDAT Red NA CPTAC3 9941cd16-8286-4c6e-9919-47da543f4841 6107865a82786c4051e6f1f3f1c795c2 { 'aliquot_tag': 'ALQ_a174abb3', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -26682,12 +28653,12 @@ C3N-01651.miRNA-Seq.T C3N-01651 CCRCC miRNA-Seq tumor CPT0088690006 181012_UNC32 C3N-01651.miRNA-Seq.T.hg38 C3N-01651 CCRCC miRNA-Seq tumor CPT0088690006 51d0c04a-5324-41dd-abc1-9d1d7b735037_mirnaseq_gdc_realn.bam 206614715 BAM harmonized CPTAC3 c684d1d6-4796-4781-8e09-8d12175d8eb7 2a3d036c34a8b4b40c5d54823c67c32d { 'aliquot_tag': 'ALQ_cae72e46', 'gdc_sample_type': 'Primary Tumor' } C3N-01651.RNA-Seq.chimeric.A.hg38 C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 283d46dc-68a0-4856-8191-8f8148c165b2.rna_seq.chimeric.gdc_realn.bam 55566451 BAM chimeric harmonized CPTAC3 6e3cd892-9b86-467a-91a5-102a1c0257e5 ef2cb4d39a7c8cf66b1e59c481e68bda { 'aliquot_tag': 'ALQ_31cbb622', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01651.RNA-Seq.chimeric.T.hg38 C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 b9e1ffba-4c8b-4393-8654-973a8866245d.rna_seq.chimeric.gdc_realn.bam 38473165 BAM chimeric harmonized CPTAC3 759f31e9-0e34-4f98-8e92-9171fa5d5e5b 52165df4eccd53dcea42a3327178e60a { 'aliquot_tag': 'ALQ_cae72e46', 'gdc_sample_type': 'Primary Tumor' } -C3N-01651.RNA-Seq.genomic.A.hg38 C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 283d46dc-68a0-4856-8191-8f8148c165b2.rna_seq.genomic.gdc_realn.bam 5696632456 BAM genomic harmonized CPTAC3 a401216b-4c2f-4b89-9bc4-da5dd3b35369 1b835ebe8ad53b573a530d9afa944cae { 'aliquot_tag': 'ALQ_31cbb622', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01651.RNA-Seq.genomic.T.hg38 C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 b9e1ffba-4c8b-4393-8654-973a8866245d.rna_seq.genomic.gdc_realn.bam 7965233080 BAM genomic harmonized CPTAC3 b07d6048-36d6-4e0a-8e60-ba586c56f155 a14f0160614ad6cfb31bc2bb9910e5f5 { 'aliquot_tag': 'ALQ_cae72e46', 'gdc_sample_type': 'Primary Tumor' } -C3N-01651.RNA-Seq.R1_L005.T C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTTTCG_S20_L005_R1_001.fastq.gz 3824566082 FASTQ R1_L005 unaligned CPTAC3 561ecf0d-8c91-42da-801f-1e4ee18dfb1e 632458fd06fc63c95d41373119ec0e31 { 'aliquot_tag': 'ALQ_cae72e46', 'gdc_sample_type': 'Primary Tumor' } -C3N-01651.RNA-Seq.R1_L008.A C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L008_R1_001.fastq.gz 2920856846 FASTQ R1_L008 unaligned CPTAC3 544230d7-1e21-48c7-a50a-63a7325a5ee7 83d1163475edc4cb26abf2b587a85726 { 'aliquot_tag': 'ALQ_31cbb622', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01651.RNA-Seq.R2_L005.T C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTTTCG_S20_L005_R2_001.fastq.gz 4129283637 FASTQ R2_L005 unaligned CPTAC3 0df3e0d9-4773-48d7-833b-e21828efec13 dc573641d2b4fb78ac8294a71ddef0f4 { 'aliquot_tag': 'ALQ_cae72e46', 'gdc_sample_type': 'Primary Tumor' } -C3N-01651.RNA-Seq.R2_L008.A C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L008_R2_001.fastq.gz 3114725417 FASTQ R2_L008 unaligned CPTAC3 b76c5d05-3176-4844-bb1d-23f6274a8d6e 86b650a17ab7626e88f951b640c369e8 { 'aliquot_tag': 'ALQ_31cbb622', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01651.RNA-Seq.genomic.A.hg38 C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 283d46dc-68a0-4856-8191-8f8148c165b2.rna_seq.genomic.gdc_realn.bam 5696632456 BAM genomic harmonized CPTAC3 95b68166-fd8d-4f44-8b24-1c80a0ad30c9 1b835ebe8ad53b573a530d9afa944cae { 'aliquot_tag': 'ALQ_31cbb622', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01651.RNA-Seq.genomic.T.hg38 C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 b9e1ffba-4c8b-4393-8654-973a8866245d.rna_seq.genomic.gdc_realn.bam 7965233080 BAM genomic harmonized CPTAC3 2e0ba60b-de5f-4894-a560-136d15f9c382 a14f0160614ad6cfb31bc2bb9910e5f5 { 'aliquot_tag': 'ALQ_cae72e46', 'gdc_sample_type': 'Primary Tumor' } +C3N-01651.RNA-Seq.R1_L005.T C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTTTCG_S20_L005_R1_001.fastq.gz 3824566082 FASTQ R1_L005 unaligned CPTAC3 561ecf0d-8c91-42da-801f-1e4ee18dfb1e 632458fd06fc63c95d41373119ec0e31 { 'aliquot_tag': 'ALQ_cae72e46', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01651.RNA-Seq.R1_L008.A C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L008_R1_001.fastq.gz 2920856846 FASTQ R1_L008 unaligned CPTAC3 544230d7-1e21-48c7-a50a-63a7325a5ee7 83d1163475edc4cb26abf2b587a85726 { 'aliquot_tag': 'ALQ_31cbb622', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01651.RNA-Seq.R2_L005.T C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 170908_UNC31-K00269_0080_BHLJ52BBXX_GTTTCG_S20_L005_R2_001.fastq.gz 4129283637 FASTQ R2_L005 unaligned CPTAC3 0df3e0d9-4773-48d7-833b-e21828efec13 dc573641d2b4fb78ac8294a71ddef0f4 { 'aliquot_tag': 'ALQ_cae72e46', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01651.RNA-Seq.R2_L008.A C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 171215_UNC32-K00270_0072_AHN3THBBXX_CAGATC_S6_L008_R2_001.fastq.gz 3114725417 FASTQ R2_L008 unaligned CPTAC3 b76c5d05-3176-4844-bb1d-23f6274a8d6e 86b650a17ab7626e88f951b640c369e8 { 'aliquot_tag': 'ALQ_31cbb622', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-01651.RNA-Seq.transcriptome.A.hg38 C3N-01651 CCRCC RNA-Seq tissue_normal CPT0088710006 283d46dc-68a0-4856-8191-8f8148c165b2.rna_seq.transcriptome.gdc_realn.bam 7172929753 BAM transcriptome harmonized CPTAC3 d70b95a5-c209-400f-ad72-adb18aa1f7d9 4693ce21ea12ca3d703252725e665b13 { 'aliquot_tag': 'ALQ_31cbb622', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01651.RNA-Seq.transcriptome.T.hg38 C3N-01651 CCRCC RNA-Seq tumor CPT0088690006 b9e1ffba-4c8b-4393-8654-973a8866245d.rna_seq.transcriptome.gdc_realn.bam 10824996041 BAM transcriptome harmonized CPTAC3 d8f7350b-3b18-4bbd-bf69-55bce4db41ab 7ea3f2f51ba999ba9f36562ba7b4e1bc { 'aliquot_tag': 'ALQ_cae72e46', 'gdc_sample_type': 'Primary Tumor' } C3N-01651.WGS.A C3N-01651 CCRCC WGS tissue_normal CPT0088710009 CPT0088710009.WholeGenome.RP-1303.bam 54319081040 BAM aligned CPTAC3 a3e54617-25f9-4563-bfcb-aeb65ab5c885 339fc010ca89481135c6e92c7ec4b52f { 'aliquot_tag': 'ALQ_a174abb3', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -26710,16 +28681,16 @@ C3N-01652.miRNA-Seq.A C3N-01652 CCRCC miRNA-Seq tissue_normal CPT0380700006 2101 C3N-01652.miRNA-Seq.A.hg38 C3N-01652 CCRCC miRNA-Seq tissue_normal CPT0380700006 e8753f58-bb84-411e-91b0-28f44eabf26f_mirnaseq_gdc_realn.bam 294454593 BAM harmonized CPTAC3 1ac3a087-3ace-42b4-b85a-8699730d804c 8fbf52923658154b2a11398e40a20694 { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01652.miRNA-Seq.T C3N-01652 CCRCC miRNA-Seq tumor CPT0380690006 210111_UNC32-K00270_0270_AHJ5LKBBXY_ACTTGA_S40_L003_R1_001.unaln.bam 268565396 BAM unaligned CPTAC3 18fa473e-bae5-4fa2-84fe-b8a8337f8994 6445547f37ce6d06f73e5815e8e49c6b { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor' } C3N-01652.miRNA-Seq.T.hg38 C3N-01652 CCRCC miRNA-Seq tumor CPT0380690006 a74b4047-1d96-4ac9-aa1e-dbe81e713ff7_mirnaseq_gdc_realn.bam 282587361 BAM harmonized CPTAC3 6f2908a8-b28a-4d97-a8d7-767533805916 85ad5f8193be527780964d99dc7d5f2d { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01652.RNA-Seq.chimeric.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 c303b230-e0ea-45c6-abea-b612a6a4d0b2.rna_seq.chimeric.gdc_realn.bam 366657622 BAM chimeric harmonized CPTAC3 657fbca3-178b-4e41-a42e-05765639fa1a 11c9db94701f9f0e85cfd4655e664b1a { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01652.RNA-Seq.chimeric.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 369772b8-4e00-4df1-a5ee-01cec74119f0.rna_seq.chimeric.gdc_realn.bam 146259736 BAM chimeric harmonized CPTAC3 1d91d06b-f6d6-4db5-afe8-fd01c4ea1ef8 7d05e2a66313b86d20204c93d2d5c870 { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01652.RNA-Seq.genomic.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 c303b230-e0ea-45c6-abea-b612a6a4d0b2.rna_seq.genomic.gdc_realn.bam 9428655205 BAM genomic harmonized CPTAC3 581bf1fb-c34a-4d5e-9a86-de45a23f6877 d685a2046748b0346ed1cad3e69d67eb { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01652.RNA-Seq.genomic.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 369772b8-4e00-4df1-a5ee-01cec74119f0.rna_seq.genomic.gdc_realn.bam 7762217722 BAM genomic harmonized CPTAC3 7911f478-7e50-4c40-8c70-1b0c9ce59977 f51cc131d4b8d7089ab40f0e2cd9c35b { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01652.RNA-Seq.R1_L007.A C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 210105_UNC32-K00270_0269_BHKN5MBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 4425954728 FASTQ R1_L007 unaligned CPTAC3 3d182edc-0025-4c5e-a113-ab8f455c5809 653ed7abeb131383d0c03e4c773cad48 { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01652.RNA-Seq.R1_L007.T C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 210318_UNC32-K00270_0277_AHKNTVBBXY_AATCCGGA-CTACAGTT_S57_L007_R1_001.fastq.gz 3915278210 FASTQ R1_L007 unaligned CPTAC3 5531d428-ed75-411a-a7cc-860070f0ede6 27332eb0d1bc8d0019e750d68929e690 { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01652.RNA-Seq.R2_L007.A C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 210105_UNC32-K00270_0269_BHKN5MBBXY_AGTTCAGG-CCAACAGA_S25_L007_R2_001.fastq.gz 5069312587 FASTQ R2_L007 unaligned CPTAC3 00ffe329-b3bf-4a6b-9c31-e446cb678e3d f41374c2b9ded4fc8ee2a1a534c2d44f { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01652.RNA-Seq.R2_L007.T C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 210318_UNC32-K00270_0277_AHKNTVBBXY_AATCCGGA-CTACAGTT_S57_L007_R2_001.fastq.gz 4368979670 FASTQ R2_L007 unaligned CPTAC3 2374872f-af06-41f2-a331-682d4635d9e3 5df810ec68870455e791c37d6846cd2d { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01652.RNA-Seq.transcriptome.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 c303b230-e0ea-45c6-abea-b612a6a4d0b2.rna_seq.transcriptome.gdc_realn.bam 9971242305 BAM transcriptome harmonized CPTAC3 b70d54bc-ebbf-4d05-acd0-2ce05a0dc0ee ea680af7a86abf5331c5d89fd27f70f3 { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01652.RNA-Seq.transcriptome.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 369772b8-4e00-4df1-a5ee-01cec74119f0.rna_seq.transcriptome.gdc_realn.bam 9099186452 BAM transcriptome harmonized CPTAC3 7515557d-0af4-4a0a-acec-bc0552bf2d06 d1974fd1791c19ab274b3d94d1928e8b { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01652.RNA-Seq.chimeric.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 06f88778-8a91-4f69-b50f-5320901dfd9a.rna_seq.chimeric.gdc_realn.bam 366703286 BAM chimeric harmonized CPTAC3 282a4e42-8baa-4d5a-90a1-477cdc41814b d387f80d342e35b2decd7c6e585fa93f { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01652.RNA-Seq.chimeric.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 dde91732-79b7-41e6-9dc0-49037e9e9436.rna_seq.chimeric.gdc_realn.bam 146250034 BAM chimeric harmonized CPTAC3 17175688-34bb-49b8-8531-7bc54c76487b 44fd109b1ec424e38c60e8f749831956 { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01652.RNA-Seq.genomic.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 06f88778-8a91-4f69-b50f-5320901dfd9a.rna_seq.genomic.gdc_realn.bam 9435855583 BAM genomic harmonized CPTAC3 6ec7df9c-37aa-4729-8304-9bb478b8fdbb 14039072aa71ac109f4b4872713e801d { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01652.RNA-Seq.genomic.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 dde91732-79b7-41e6-9dc0-49037e9e9436.rna_seq.genomic.gdc_realn.bam 7768995947 BAM genomic harmonized CPTAC3 9369b2ff-f7c4-4e67-aece-0a611150e525 9d490d8aa142f10e9b7d3e104dce92bb { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor' } +C3N-01652.RNA-Seq.R1_L007.A C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 210105_UNC32-K00270_0269_BHKN5MBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 4425954728 FASTQ R1_L007 unaligned CPTAC3 3d182edc-0025-4c5e-a113-ab8f455c5809 653ed7abeb131383d0c03e4c773cad48 { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01652.RNA-Seq.R1_L007.T C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 210318_UNC32-K00270_0277_AHKNTVBBXY_AATCCGGA-CTACAGTT_S57_L007_R1_001.fastq.gz 3915278210 FASTQ R1_L007 unaligned CPTAC3 5531d428-ed75-411a-a7cc-860070f0ede6 27332eb0d1bc8d0019e750d68929e690 { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01652.RNA-Seq.R2_L007.A C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 210105_UNC32-K00270_0269_BHKN5MBBXY_AGTTCAGG-CCAACAGA_S25_L007_R2_001.fastq.gz 5069312587 FASTQ R2_L007 unaligned CPTAC3 00ffe329-b3bf-4a6b-9c31-e446cb678e3d f41374c2b9ded4fc8ee2a1a534c2d44f { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01652.RNA-Seq.R2_L007.T C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 210318_UNC32-K00270_0277_AHKNTVBBXY_AATCCGGA-CTACAGTT_S57_L007_R2_001.fastq.gz 4368979670 FASTQ R2_L007 unaligned CPTAC3 2374872f-af06-41f2-a331-682d4635d9e3 5df810ec68870455e791c37d6846cd2d { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01652.RNA-Seq.transcriptome.A.hg38 C3N-01652 CCRCC RNA-Seq tissue_normal CPT0380700006 06f88778-8a91-4f69-b50f-5320901dfd9a.rna_seq.transcriptome.gdc_realn.bam 11410332152 BAM transcriptome harmonized CPTAC3 07fa5e4f-b1d0-41db-a3d8-62c92bb8dbea fd10a243b747c8f05664a12b3a3a20c2 { 'aliquot_tag': 'ALQ_6c9ed30', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01652.RNA-Seq.transcriptome.T.hg38 C3N-01652 CCRCC RNA-Seq tumor CPT0380690006 dde91732-79b7-41e6-9dc0-49037e9e9436.rna_seq.transcriptome.gdc_realn.bam 10454749291 BAM transcriptome harmonized CPTAC3 b932defa-0152-4bcd-b1cf-529042d57a30 a5cf5b1e6627d177f59bf73de9a112f5 { 'aliquot_tag': 'ALQ_c0855ce4', 'gdc_sample_type': 'Primary Tumor' } C3N-01652.WGS.N C3N-01652 CCRCC WGS blood_normal CPT0380810002 CPT0380810002.WholeGenome.RP-2158.bam 21792366946 BAM aligned CPTAC3 bdb9668e-5bae-43eb-95de-eb9680f4beea d301a800e3309183bcfb03816663c9fe { 'aliquot_tag': 'ALQ_cd92b24c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01652.WGS.N.hg38 C3N-01652 CCRCC WGS blood_normal CPT0380810002 af1f4ba7-d2eb-4086-a06c-3dbc0806194a_wgs_gdc_realn.bam 65581268711 BAM harmonized CPTAC3 972aeb18-fa61-4f48-bbb8-f386ca2c2f57 52f7bf60b0eddfcc6be03f5c861c84b2 { 'aliquot_tag': 'ALQ_cd92b24c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01652.WGS.T C3N-01652 CCRCC WGS tumor CPT0380690009 CPT0380690009.WholeGenome.RP-2158.bam 27636981463 BAM aligned CPTAC3 ff9ab466-1145-42e6-9400-e8bc46cdce6e 07464e289badaa5b012728f811f9dc91 { 'aliquot_tag': 'ALQ_503a4175', 'gdc_sample_type': 'Primary Tumor' } @@ -26738,16 +28709,16 @@ C3N-01653.miRNA-Seq.A C3N-01653 CCRCC miRNA-Seq tissue_normal CPT0380900006 2101 C3N-01653.miRNA-Seq.A.hg38 C3N-01653 CCRCC miRNA-Seq tissue_normal CPT0380900006 70218468-7051-4fb1-9cad-87224510ef8f_mirnaseq_gdc_realn.bam 432308639 BAM harmonized CPTAC3 9b9eaf88-1670-4359-84fb-56cbfbf84250 7a4906aeb79c81c196e9761627d61587 { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01653.miRNA-Seq.T C3N-01653 CCRCC miRNA-Seq tumor CPT0380840006 210111_UNC32-K00270_0270_AHJ5LKBBXY_TCGGCA_S38_L003_R1_001.unaln.bam 259028873 BAM unaligned CPTAC3 6bc121fb-7b69-440c-aa70-9b5abd011bbe 0ff440183a781ec004a0f3de7c9a379d { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor' } C3N-01653.miRNA-Seq.T.hg38 C3N-01653 CCRCC miRNA-Seq tumor CPT0380840006 1a4d878d-638c-411b-b3bb-e4215e72ea74_mirnaseq_gdc_realn.bam 275427963 BAM harmonized CPTAC3 e0deee0c-2d07-4339-b69a-bce74787ae1e 54ee03e31eae201b619770b3169a5fb6 { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor' } -C3N-01653.RNA-Seq.chimeric.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 5dbe92d8-3a85-43e5-8c22-5e140db50933.rna_seq.chimeric.gdc_realn.bam 375267984 BAM chimeric harmonized CPTAC3 cd94a918-5c64-46e5-a0e4-71f1dd242dc5 b083b639a6dd372adb1188ac2ed363d9 { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01653.RNA-Seq.chimeric.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 b55194cc-1abd-4925-8d9f-f170b8b2b0ca.rna_seq.chimeric.gdc_realn.bam 117082965 BAM chimeric harmonized CPTAC3 d3effa6c-af63-40c9-a7b7-f719ebb953e4 ac0be2837fa4f24ab3c8e540e2dfbdc5 { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor' } -C3N-01653.RNA-Seq.genomic.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 5dbe92d8-3a85-43e5-8c22-5e140db50933.rna_seq.genomic.gdc_realn.bam 8549622530 BAM genomic harmonized CPTAC3 d1ec869a-d615-4bc7-9724-f91fd51d5622 5e6c07eab51abbdb734714597d4a04ea { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01653.RNA-Seq.genomic.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 b55194cc-1abd-4925-8d9f-f170b8b2b0ca.rna_seq.genomic.gdc_realn.bam 9119991278 BAM genomic harmonized CPTAC3 becde914-30e1-48f4-ae04-d3cbb4227632 e47a627a0b02255eb94bba9e281b2d9b { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor' } -C3N-01653.RNA-Seq.R1_L004.T C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 210105_UNC32-K00270_0268_AHK7HMBBXY_GAATGAGA-GAGGCATT_S12_L004_R1_001.fastq.gz 3923074064 FASTQ R1_L004 unaligned CPTAC3 902857fe-3aec-4efe-9d57-52a6f958c99b 757667db4f01203496edc8e40284e723 { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor' } -C3N-01653.RNA-Seq.R1_L007.A C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 210105_UNC32-K00270_0269_BHKN5MBBXY_GACCTGAA-TTGGTGAG_S27_L007_R1_001.fastq.gz 4043284249 FASTQ R1_L007 unaligned CPTAC3 d0cc77fb-4c6e-401a-adf0-412b06fed88a 83a3a8b06138e9e56b3540f0bb3c363a { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01653.RNA-Seq.R2_L004.T C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 210105_UNC32-K00270_0268_AHK7HMBBXY_GAATGAGA-GAGGCATT_S12_L004_R2_001.fastq.gz 4442548416 FASTQ R2_L004 unaligned CPTAC3 24bde46f-b757-4cf0-9304-7c67585ae3cf be0dda444f5dfed5ea7afedf17a9d822 { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor' } -C3N-01653.RNA-Seq.R2_L007.A C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 210105_UNC32-K00270_0269_BHKN5MBBXY_GACCTGAA-TTGGTGAG_S27_L007_R2_001.fastq.gz 4475293053 FASTQ R2_L007 unaligned CPTAC3 f8deea31-7e73-4812-908f-441f2fa0d049 fd0c146ea0f5e7c65a5ccea0be54d589 { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01653.RNA-Seq.transcriptome.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 5dbe92d8-3a85-43e5-8c22-5e140db50933.rna_seq.transcriptome.gdc_realn.bam 9472158682 BAM transcriptome harmonized CPTAC3 205d771d-87aa-4d94-a4d0-9982841b058a 32c4d5e4c58e8d71e4b351885e6c3c36 { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01653.RNA-Seq.transcriptome.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 b55194cc-1abd-4925-8d9f-f170b8b2b0ca.rna_seq.transcriptome.gdc_realn.bam 9201272714 BAM transcriptome harmonized CPTAC3 b600a613-652b-476e-b8f4-3137fd420eae 859f8a41c6a519bae140c87849b0a0c9 { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor' } +C3N-01653.RNA-Seq.chimeric.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 8e292fe5-0533-46f5-ac33-2e7e55a0936a.rna_seq.chimeric.gdc_realn.bam 375300742 BAM chimeric harmonized CPTAC3 f766de46-9037-4725-ae1c-fd18f5fe18a4 e3d0881a469f2db4d0182378fc3acf01 { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01653.RNA-Seq.chimeric.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 36084901-82b0-4f53-830a-8c7835afe808.rna_seq.chimeric.gdc_realn.bam 117070013 BAM chimeric harmonized CPTAC3 356363d8-17da-402e-8e19-6aef5da22f05 e163ed6d53863db5c037f9dbef172068 { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor' } +C3N-01653.RNA-Seq.genomic.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 8e292fe5-0533-46f5-ac33-2e7e55a0936a.rna_seq.genomic.gdc_realn.bam 8557466770 BAM genomic harmonized CPTAC3 ea8a0267-83f8-4608-b7c9-83b8d329dacd be6a6bf8eb30aae57328254805de33d3 { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01653.RNA-Seq.genomic.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 36084901-82b0-4f53-830a-8c7835afe808.rna_seq.genomic.gdc_realn.bam 9129609949 BAM genomic harmonized CPTAC3 21ae86d4-f3b8-495c-bc50-90d2139b55f7 63ace05cedaa3f2d92154703fff87cad { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor' } +C3N-01653.RNA-Seq.R1_L004.T C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 210105_UNC32-K00270_0268_AHK7HMBBXY_GAATGAGA-GAGGCATT_S12_L004_R1_001.fastq.gz 3923074064 FASTQ R1_L004 unaligned CPTAC3 902857fe-3aec-4efe-9d57-52a6f958c99b 757667db4f01203496edc8e40284e723 { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01653.RNA-Seq.R1_L007.A C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 210105_UNC32-K00270_0269_BHKN5MBBXY_GACCTGAA-TTGGTGAG_S27_L007_R1_001.fastq.gz 4043284249 FASTQ R1_L007 unaligned CPTAC3 d0cc77fb-4c6e-401a-adf0-412b06fed88a 83a3a8b06138e9e56b3540f0bb3c363a { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01653.RNA-Seq.R2_L004.T C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 210105_UNC32-K00270_0268_AHK7HMBBXY_GAATGAGA-GAGGCATT_S12_L004_R2_001.fastq.gz 4442548416 FASTQ R2_L004 unaligned CPTAC3 24bde46f-b757-4cf0-9304-7c67585ae3cf be0dda444f5dfed5ea7afedf17a9d822 { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01653.RNA-Seq.R2_L007.A C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 210105_UNC32-K00270_0269_BHKN5MBBXY_GACCTGAA-TTGGTGAG_S27_L007_R2_001.fastq.gz 4475293053 FASTQ R2_L007 unaligned CPTAC3 f8deea31-7e73-4812-908f-441f2fa0d049 fd0c146ea0f5e7c65a5ccea0be54d589 { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01653.RNA-Seq.transcriptome.A.hg38 C3N-01653 CCRCC RNA-Seq tissue_normal CPT0380900006 8e292fe5-0533-46f5-ac33-2e7e55a0936a.rna_seq.transcriptome.gdc_realn.bam 10847400222 BAM transcriptome harmonized CPTAC3 e680ad37-4aa2-420e-8da7-3bb17e383c76 df22682357319bfe639d3a1f166ad3f6 { 'aliquot_tag': 'ALQ_3cc38c40', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01653.RNA-Seq.transcriptome.T.hg38 C3N-01653 CCRCC RNA-Seq tumor CPT0380840006 36084901-82b0-4f53-830a-8c7835afe808.rna_seq.transcriptome.gdc_realn.bam 10324189325 BAM transcriptome harmonized CPTAC3 2c49a057-b0f8-48a2-8627-2230801f0dd4 fe716823e49d26b9bbe94b7adb2b8b75 { 'aliquot_tag': 'ALQ_21ff925', 'gdc_sample_type': 'Primary Tumor' } C3N-01653.WGS.N C3N-01653 CCRCC WGS blood_normal CPT0381130002 CPT0381130002.WholeGenome.RP-2158.bam 21964602888 BAM aligned CPTAC3 fa6f7227-47fb-4021-a5b1-bd6bf0609a58 94dd47c89d58290b1993e140c3571224 { 'aliquot_tag': 'ALQ_362abb50', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01653.WGS.N.hg38 C3N-01653 CCRCC WGS blood_normal CPT0381130002 3c9f66ce-a052-4fa2-afd5-a06204384966_wgs_gdc_realn.bam 67562472880 BAM harmonized CPTAC3 0c10ec57-d991-487e-a8dd-e1c8e283523a 023ba1eee902c171ab6faca9e7a786bf { 'aliquot_tag': 'ALQ_362abb50', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01653.WGS.T C3N-01653 CCRCC WGS tumor CPT0380840009 CPT0380840009.WholeGenome.RP-2158.bam 21978851679 BAM aligned CPTAC3 b030e965-57f1-42f9-9f42-50dd021846b3 f5ee5b9a3d6017a4718a9dea9ffaf481 { 'aliquot_tag': 'ALQ_92a0e4b4', 'gdc_sample_type': 'Primary Tumor' } @@ -26766,16 +28737,16 @@ C3N-01654.miRNA-Seq.A C3N-01654 CCRCC miRNA-Seq tissue_normal CPT0121510006 1901 C3N-01654.miRNA-Seq.A.hg38 C3N-01654 CCRCC miRNA-Seq tissue_normal CPT0121510006 6d15778d-6e2d-43ba-af66-338d56cbf05b_mirnaseq_gdc_realn.bam 247828017 BAM harmonized CPTAC3 3c74d31c-58c1-48fb-bf7e-c91c9f820401 8b33ca57c4b62d7c9b554d3c475ad254 { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01654.miRNA-Seq.T C3N-01654 CCRCC miRNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0176_AHYGLVBBXX_CACTCA_S32_L005_R1_001.unaln.bam 265739040 BAM unaligned CPTAC3 17363ef4-7caa-4039-b6ee-b0294c73aec0 a3de494952feb51149d126133d47bba0 { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor' } C3N-01654.miRNA-Seq.T.hg38 C3N-01654 CCRCC miRNA-Seq tumor CPT0121490009 7a638cce-6efc-4173-87d3-c88b47fcec8e_mirnaseq_gdc_realn.bam 289013038 BAM harmonized CPTAC3 910d2dd9-7de3-4802-a8d8-d9ee1da5517c 7b3c0138d11757c4e4994c76f8c183d2 { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor' } -C3N-01654.RNA-Seq.chimeric.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 20e3d549-d76d-4491-a873-321543e40837.rna_seq.chimeric.gdc_realn.bam 35180825 BAM chimeric harmonized CPTAC3 1fb48d77-953a-415c-b974-1c169a4c57bc bb84fad06c84f08a62cc3d10b1280eb6 { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01654.RNA-Seq.chimeric.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 045c0fa7-cc36-45eb-a33c-13cdded25fc8.rna_seq.chimeric.gdc_realn.bam 42017108 BAM chimeric harmonized CPTAC3 6781dd9a-bb40-42a6-875b-62ac5f84eb6c 5f62dc9e6e504bbb0f8a1a6496a547c7 { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor' } -C3N-01654.RNA-Seq.genomic.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 20e3d549-d76d-4491-a873-321543e40837.rna_seq.genomic.gdc_realn.bam 8355033982 BAM genomic harmonized CPTAC3 6510e17a-dced-491c-be2a-c12267f3836b e018f22ad6a27e8190f1e53aa229f2b0 { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01654.RNA-Seq.genomic.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 045c0fa7-cc36-45eb-a33c-13cdded25fc8.rna_seq.genomic.gdc_realn.bam 8963069069 BAM genomic harmonized CPTAC3 3817d9cf-4439-4020-833d-6528064fdd24 90dc17c865940067c09608eed810004a { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor' } -C3N-01654.RNA-Seq.R1_L003.T C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 4175032929 FASTQ R1_L003 unaligned CPTAC3 127b6bff-8a3f-4776-b233-3b679dffa7b5 fbcf9bcada5c35df67ac4b9644461cf1 { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor' } -C3N-01654.RNA-Seq.R1_L008.A C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 190104_UNC31-K00269_0175_BH32LHBBXY_GAGTGG_S77_L008_R1_001.fastq.gz 3866145561 FASTQ R1_L008 unaligned CPTAC3 cd9b7976-9552-4d56-8eec-e2aef0bd44d1 d620f6e47d1af59238c587b08be8a4eb { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01654.RNA-Seq.R2_L003.T C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4387876435 FASTQ R2_L003 unaligned CPTAC3 7fe4eb04-1599-4151-a606-a2556673c539 8818436f40a07ed74f979f7336b2ac5e { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor' } -C3N-01654.RNA-Seq.R2_L008.A C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 190104_UNC31-K00269_0175_BH32LHBBXY_GAGTGG_S77_L008_R2_001.fastq.gz 4020226117 FASTQ R2_L008 unaligned CPTAC3 cddf7d17-0b60-4be0-86db-425a55eb4d70 8ef9f454c8cbb58c6dc50b73fbe439a6 { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01654.RNA-Seq.transcriptome.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 20e3d549-d76d-4491-a873-321543e40837.rna_seq.transcriptome.gdc_realn.bam 8940227233 BAM transcriptome harmonized CPTAC3 c303ad41-22c0-43d7-b089-e7db97a7330f 4501e18260ee0b0dbe342f0fb09f44b9 { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01654.RNA-Seq.transcriptome.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 045c0fa7-cc36-45eb-a33c-13cdded25fc8.rna_seq.transcriptome.gdc_realn.bam 10234710364 BAM transcriptome harmonized CPTAC3 80b8cadb-3b39-4a97-947c-994dd85c512f 477924d45c300cd3445fc3c08606116f { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor' } +C3N-01654.RNA-Seq.chimeric.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 363d4537-0dc6-4131-8c3a-047cf40ee552.rna_seq.chimeric.gdc_realn.bam 35166213 BAM chimeric harmonized CPTAC3 c9d00bc8-124b-41c3-b8c5-b4eccab16e96 574c9c855e425cf2fd17729331800671 { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01654.RNA-Seq.chimeric.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 d9ce7748-e981-4254-8911-f6b49a8da6b5.rna_seq.chimeric.gdc_realn.bam 41991305 BAM chimeric harmonized CPTAC3 e0b4b5e0-73ea-4cef-945a-850646b52829 a89bc7b6b721c1379dbb5bd5db515d4b { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor' } +C3N-01654.RNA-Seq.genomic.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 363d4537-0dc6-4131-8c3a-047cf40ee552.rna_seq.genomic.gdc_realn.bam 8356002308 BAM genomic harmonized CPTAC3 0bea9a8a-763e-497d-b2c2-9ddcf337aecf 6cdbd17d2c566e25dd2088404ddc9f04 { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01654.RNA-Seq.genomic.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 d9ce7748-e981-4254-8911-f6b49a8da6b5.rna_seq.genomic.gdc_realn.bam 8963716038 BAM genomic harmonized CPTAC3 c3028a2f-914c-4ec4-8d2c-d121d50529d6 281e13aba7a3a7357295d4b31c5d9674 { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor' } +C3N-01654.RNA-Seq.R1_L003.T C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 4175032929 FASTQ R1_L003 unaligned CPTAC3 127b6bff-8a3f-4776-b233-3b679dffa7b5 fbcf9bcada5c35df67ac4b9644461cf1 { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01654.RNA-Seq.R1_L008.A C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 190104_UNC31-K00269_0175_BH32LHBBXY_GAGTGG_S77_L008_R1_001.fastq.gz 3866145561 FASTQ R1_L008 unaligned CPTAC3 cd9b7976-9552-4d56-8eec-e2aef0bd44d1 d620f6e47d1af59238c587b08be8a4eb { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01654.RNA-Seq.R2_L003.T C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 190108_UNC31-K00269_0177_BH32KTBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4387876435 FASTQ R2_L003 unaligned CPTAC3 7fe4eb04-1599-4151-a606-a2556673c539 8818436f40a07ed74f979f7336b2ac5e { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01654.RNA-Seq.R2_L008.A C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 190104_UNC31-K00269_0175_BH32LHBBXY_GAGTGG_S77_L008_R2_001.fastq.gz 4020226117 FASTQ R2_L008 unaligned CPTAC3 cddf7d17-0b60-4be0-86db-425a55eb4d70 8ef9f454c8cbb58c6dc50b73fbe439a6 { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-01654.RNA-Seq.transcriptome.A.hg38 C3N-01654 CCRCC RNA-Seq tissue_normal CPT0121510006 363d4537-0dc6-4131-8c3a-047cf40ee552.rna_seq.transcriptome.gdc_realn.bam 10221761434 BAM transcriptome harmonized CPTAC3 47c86777-e3cd-4db7-8658-65a68c0ed94e 400ba5cdafb33608c7775663dcd2003c { 'aliquot_tag': 'ALQ_6f205a71', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01654.RNA-Seq.transcriptome.T.hg38 C3N-01654 CCRCC RNA-Seq tumor CPT0121490009 d9ce7748-e981-4254-8911-f6b49a8da6b5.rna_seq.transcriptome.gdc_realn.bam 11628001101 BAM transcriptome harmonized CPTAC3 ebf0bb1f-5901-4a44-8ce5-0e3e11fda191 db568a0f54a03ac0e7ac8f64c45eb329 { 'aliquot_tag': 'ALQ_4b3df84', 'gdc_sample_type': 'Primary Tumor' } C3N-01654.WGS.A C3N-01654 CCRCC WGS tissue_normal CPT0121510009 CPT0121510009.WholeGenome.RP-1303.bam 58378410551 BAM aligned CPTAC3 e09c3be4-a67a-483c-9fd9-a4daa8d3f18b da524fc45cecd4ce43cd71feebef3128 { 'aliquot_tag': 'ALQ_ff9f47e0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01654.WGS.A.hg38 C3N-01654 CCRCC WGS tissue_normal CPT0121510009 b9bee8a6-a804-481e-9e55-f44cad81601e_wgs_gdc_realn.bam 85984140358 BAM harmonized CPTAC3 041bd79f-5db7-42d9-8faa-2d9658fdb4f2 bd377560a9d358eb7c9df510cd6c5380 { 'aliquot_tag': 'ALQ_ff9f47e0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01654.WGS.N C3N-01654 CCRCC WGS blood_normal CPT0121550002 CPT0121550002.WholeGenome.RP-1303.bam 59611997994 BAM aligned CPTAC3 da4aa637-b9e6-4b78-8902-88d7a11826ca ef43de127229b44e1a46e9a1b26e05bc { 'aliquot_tag': 'ALQ_9dcd38a8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26792,11 +28763,11 @@ C3N-01655.MethArray.Green.T C3N-01655 CCRCC Methylation Array tumor CPT012156000 C3N-01655.MethArray.Red.T C3N-01655 CCRCC Methylation Array tumor CPT0121560005 203219650098_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 0dc790f6-e10a-461a-a292-9ad54444cac2 7dd55c9b562ed789a64de7cc604403b0 { 'aliquot_tag': 'ALQ_4409d7db', 'gdc_sample_type': 'Primary Tumor' } C3N-01655.miRNA-Seq.T C3N-01655 CCRCC miRNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGGCG_S33_L005_R1_001.unaln.bam 147781433 BAM unaligned CPTAC3 3504a4f8-2c02-472e-ad37-2f6f5e1fed7b a3f6494f9811eaf27f999f8c78d8f408 { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor' } C3N-01655.miRNA-Seq.T.hg38 C3N-01655 CCRCC miRNA-Seq tumor CPT0121560008 f7483494-fd71-42e0-b6aa-613ab9378359_mirnaseq_gdc_realn.bam 162648820 BAM harmonized CPTAC3 9cb2f7a8-cdec-4093-824d-b5d204c33a99 14eb822acac5883d5f2e589c760101fc { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor' } -C3N-01655.RNA-Seq.chimeric.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 1794f515-fb14-4c3c-91a5-d2feec757aab.rna_seq.chimeric.gdc_realn.bam 129822636 BAM chimeric harmonized CPTAC3 f2d00b62-80f3-44b7-a32d-0efbc04132d5 6d280710d812a7408a3f81889765cdf7 { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor' } -C3N-01655.RNA-Seq.genomic.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 1794f515-fb14-4c3c-91a5-d2feec757aab.rna_seq.genomic.gdc_realn.bam 7345081415 BAM genomic harmonized CPTAC3 71f59b20-6d6b-4078-ac68-e8435f6f102d 45572d0d70bccd961b0b7b117da73d50 { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor' } -C3N-01655.RNA-Seq.R1_L004.T C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0177_BH32KTBBXY_GATCAG_S15_L004_R1_001.fastq.gz 3547815785 FASTQ R1_L004 unaligned CPTAC3 5369b163-1443-4083-ac1e-600c06674076 8c5bcb3e019620a1c0c2a03576f2c231 { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor' } -C3N-01655.RNA-Seq.R2_L004.T C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0177_BH32KTBBXY_GATCAG_S15_L004_R2_001.fastq.gz 3671645291 FASTQ R2_L004 unaligned CPTAC3 0fb8225d-2d8b-418b-a40b-4a5179eb7772 92d70969a0f8686f890c98d9b37321bd { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor' } -C3N-01655.RNA-Seq.transcriptome.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 1794f515-fb14-4c3c-91a5-d2feec757aab.rna_seq.transcriptome.gdc_realn.bam 8731610511 BAM transcriptome harmonized CPTAC3 c22d35d6-573f-482c-917c-c3995b19b1be 8ebb041fbb1f6dc1b712c8e6788a5a64 { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor' } +C3N-01655.RNA-Seq.chimeric.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 73dabb94-eced-4480-ba58-d9a8a031033d.rna_seq.chimeric.gdc_realn.bam 129842119 BAM chimeric harmonized CPTAC3 8d2520d9-6ba5-4692-b3a6-796d31fff1eb 6a6e9bfe400be2ef5d7573085e2becda { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor' } +C3N-01655.RNA-Seq.genomic.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 73dabb94-eced-4480-ba58-d9a8a031033d.rna_seq.genomic.gdc_realn.bam 7346214897 BAM genomic harmonized CPTAC3 e993201c-7faf-4684-a0a3-c5448cc8266d c7508203259e2d249aecc7c6f5b20adb { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor' } +C3N-01655.RNA-Seq.R1_L004.T C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0177_BH32KTBBXY_GATCAG_S15_L004_R1_001.fastq.gz 3547815785 FASTQ R1_L004 unaligned CPTAC3 5369b163-1443-4083-ac1e-600c06674076 8c5bcb3e019620a1c0c2a03576f2c231 { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01655.RNA-Seq.R2_L004.T C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 190108_UNC31-K00269_0177_BH32KTBBXY_GATCAG_S15_L004_R2_001.fastq.gz 3671645291 FASTQ R2_L004 unaligned CPTAC3 0fb8225d-2d8b-418b-a40b-4a5179eb7772 92d70969a0f8686f890c98d9b37321bd { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01655.RNA-Seq.transcriptome.T.hg38 C3N-01655 CCRCC RNA-Seq tumor CPT0121560008 73dabb94-eced-4480-ba58-d9a8a031033d.rna_seq.transcriptome.gdc_realn.bam 9698285160 BAM transcriptome harmonized CPTAC3 751858da-5ae8-40d3-93dd-edc66204eaf1 b5f091709e9a26ad6fa0949b4e887ba3 { 'aliquot_tag': 'ALQ_3ab8ab66', 'gdc_sample_type': 'Primary Tumor' } C3N-01655.WGS.N C3N-01655 CCRCC WGS blood_normal CPT0121600002 CPT0121600002.WholeGenome.RP-1303.bam 56046371997 BAM aligned CPTAC3 58f983f0-b884-43f7-a404-d5e62e0dd644 95b13edcb1d1b916e37c5f8fe1e0c57d { 'aliquot_tag': 'ALQ_d3b9c576', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01655.WGS.N.hg38 C3N-01655 CCRCC WGS blood_normal CPT0121600002 3c68b082-e933-4f28-a836-5067d8fa29a5_wgs_gdc_realn.bam 82157923684 BAM harmonized CPTAC3 601084fe-10cb-4d69-a2fd-3aa4e4205d20 8f3997f7d9718b2ce8a44c5c1d853132 { 'aliquot_tag': 'ALQ_d3b9c576', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01655.WGS.T C3N-01655 CCRCC WGS tumor CPT0121560005 CPT0121560005.WholeGenome.RP-1303.bam 65582085835 BAM aligned CPTAC3 e3e4a29c-9721-4cd6-a84a-c6e0e76c445b 78dd6ac2c1456722fd49c5a5f06659bc { 'aliquot_tag': 'ALQ_4409d7db', 'gdc_sample_type': 'Primary Tumor' } @@ -26813,16 +28784,16 @@ C3N-01656.miRNA-Seq.A C3N-01656 CCRCC miRNA-Seq tissue_normal CPT0161930009 1901 C3N-01656.miRNA-Seq.A.hg38 C3N-01656 CCRCC miRNA-Seq tissue_normal CPT0161930009 bf9a2e7f-1bf4-4c24-8da8-a1b6229cfd23_mirnaseq_gdc_realn.bam 259395079 BAM harmonized CPTAC3 46fac139-192a-4c36-8b7e-0481ac8cfa18 33c0020ebd8422330b7bffa566e6f577 { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01656.miRNA-Seq.T C3N-01656 CCRCC miRNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0176_AHYGLVBBXX_CATGGC_S34_L005_R1_001.unaln.bam 155301568 BAM unaligned CPTAC3 17de96f8-2b23-4111-a940-cc26b988d46a 2e316890cf46456bfe614e597ed9381d { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor' } C3N-01656.miRNA-Seq.T.hg38 C3N-01656 CCRCC miRNA-Seq tumor CPT0121610009 e4966596-12c3-48b5-8a4b-ba4f9b7e496d_mirnaseq_gdc_realn.bam 165870294 BAM harmonized CPTAC3 fc77c762-b62e-4a82-9fdc-9290398cb5b0 1c01db0de5a60dc6c4a2940d5c51c780 { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01656.RNA-Seq.chimeric.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 69131c57-4e93-4ca7-b286-2b8a3eb0be50.rna_seq.chimeric.gdc_realn.bam 141656291 BAM chimeric harmonized CPTAC3 9adf8206-79ba-4ebf-a117-99384a9d1c05 cc6db0b175dee2aba6a818653d7ca639 { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01656.RNA-Seq.chimeric.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 1caf0f73-e4fd-48f8-9d2a-afd309b6a7fb.rna_seq.chimeric.gdc_realn.bam 91289291 BAM chimeric harmonized CPTAC3 80bcc07c-3dec-4949-9b9e-5613fc2b8cbc 5f34d02f5cc8d93e5e83e40e2c14a346 { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01656.RNA-Seq.genomic.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 69131c57-4e93-4ca7-b286-2b8a3eb0be50.rna_seq.genomic.gdc_realn.bam 9012897770 BAM genomic harmonized CPTAC3 a2f78f31-62de-4dda-b0e2-55646d6c564f 382ad3e2b7555b1e3056c5a3a2eb3f67 { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01656.RNA-Seq.genomic.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 1caf0f73-e4fd-48f8-9d2a-afd309b6a7fb.rna_seq.genomic.gdc_realn.bam 8626175309 BAM genomic harmonized CPTAC3 021b86a9-11ba-467e-a096-731ae58f0d01 75539a41dabb26cffb81e8975a7cbe6c { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01656.RNA-Seq.R1_L004.T C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0177_BH32KTBBXY_TAGCTT_S14_L004_R1_001.fastq.gz 4270137681 FASTQ R1_L004 unaligned CPTAC3 510055c3-452b-4d66-9a51-9646fbd34c84 dffc36029ea341219b16990c50d9f45a { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01656.RNA-Seq.R1_L006.A C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTCAA_S15_L006_R1_001.fastq.gz 4025035984 FASTQ R1_L006 unaligned CPTAC3 822128c8-b3a2-49dc-9fc8-a002956989b8 fad53830184b67c247d5e4f8b3cbb561 { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01656.RNA-Seq.R2_L004.T C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0177_BH32KTBBXY_TAGCTT_S14_L004_R2_001.fastq.gz 4421707761 FASTQ R2_L004 unaligned CPTAC3 f49067a5-015e-468d-b0e3-85f583ce5309 bd9a783bd5c00a77268eadd97cbb7dfb { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01656.RNA-Seq.R2_L006.A C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTCAA_S15_L006_R2_001.fastq.gz 4301438538 FASTQ R2_L006 unaligned CPTAC3 ffe292ba-1d26-4525-825b-44fae0804a9d 61dbaa47f2909c43e574bb3141b5efb0 { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01656.RNA-Seq.transcriptome.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 69131c57-4e93-4ca7-b286-2b8a3eb0be50.rna_seq.transcriptome.gdc_realn.bam 8923996072 BAM transcriptome harmonized CPTAC3 25b3a3d7-d3d5-4e6e-b9ec-23415ad314d4 ad30f77cc35f6762c9cf0fbb6ad943f6 { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01656.RNA-Seq.transcriptome.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 1caf0f73-e4fd-48f8-9d2a-afd309b6a7fb.rna_seq.transcriptome.gdc_realn.bam 10606428872 BAM transcriptome harmonized CPTAC3 b89c2ab0-972a-4282-a5fb-20f9f2f5854b 5b47bf3e9a70d3b90ba4655b1c813979 { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01656.RNA-Seq.chimeric.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 48eeefc9-16a0-4103-9435-c7a2d51d9226.rna_seq.chimeric.gdc_realn.bam 141638868 BAM chimeric harmonized CPTAC3 09b8743c-e7bb-4c57-ade1-b5902bb37f17 d47ab57974b55ce43022d45d4093d3f6 { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01656.RNA-Seq.chimeric.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 693fa3a2-8ca5-45a6-9562-97e1782c96d0.rna_seq.chimeric.gdc_realn.bam 91262345 BAM chimeric harmonized CPTAC3 c1786d8a-4694-4e4d-bbcf-b48a21ffdc01 087b3919b582d07fbc6e7cd8afd9d316 { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01656.RNA-Seq.genomic.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 48eeefc9-16a0-4103-9435-c7a2d51d9226.rna_seq.genomic.gdc_realn.bam 9013811457 BAM genomic harmonized CPTAC3 743ce654-4039-4c34-845b-3237fda9050d 217297e5c4567bed87453deaa9fc1c9a { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01656.RNA-Seq.genomic.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 693fa3a2-8ca5-45a6-9562-97e1782c96d0.rna_seq.genomic.gdc_realn.bam 8628096850 BAM genomic harmonized CPTAC3 ce8cd2a1-efcc-43d2-a93c-3cbce8d48fb7 49cb4f1a9f8f76e4ca09550ed29c5de3 { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01656.RNA-Seq.R1_L004.T C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0177_BH32KTBBXY_TAGCTT_S14_L004_R1_001.fastq.gz 4270137681 FASTQ R1_L004 unaligned CPTAC3 510055c3-452b-4d66-9a51-9646fbd34c84 dffc36029ea341219b16990c50d9f45a { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01656.RNA-Seq.R1_L006.A C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTCAA_S15_L006_R1_001.fastq.gz 4025035984 FASTQ R1_L006 unaligned CPTAC3 822128c8-b3a2-49dc-9fc8-a002956989b8 fad53830184b67c247d5e4f8b3cbb561 { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01656.RNA-Seq.R2_L004.T C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 190108_UNC31-K00269_0177_BH32KTBBXY_TAGCTT_S14_L004_R2_001.fastq.gz 4421707761 FASTQ R2_L004 unaligned CPTAC3 f49067a5-015e-468d-b0e3-85f583ce5309 bd9a783bd5c00a77268eadd97cbb7dfb { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01656.RNA-Seq.R2_L006.A C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 190117_UNC31-K00269_0180_AH35VKBBXY_AGTCAA_S15_L006_R2_001.fastq.gz 4301438538 FASTQ R2_L006 unaligned CPTAC3 ffe292ba-1d26-4525-825b-44fae0804a9d 61dbaa47f2909c43e574bb3141b5efb0 { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01656.RNA-Seq.transcriptome.A.hg38 C3N-01656 CCRCC RNA-Seq tissue_normal CPT0161930009 48eeefc9-16a0-4103-9435-c7a2d51d9226.rna_seq.transcriptome.gdc_realn.bam 10168996375 BAM transcriptome harmonized CPTAC3 c3a4d7c8-4af9-4afa-8024-ce2f31d807d8 385ec7b8bb1e9ab44dcd276ea949249f { 'aliquot_tag': 'ALQ_76d7da01', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01656.RNA-Seq.transcriptome.T.hg38 C3N-01656 CCRCC RNA-Seq tumor CPT0121610009 693fa3a2-8ca5-45a6-9562-97e1782c96d0.rna_seq.transcriptome.gdc_realn.bam 12014368594 BAM transcriptome harmonized CPTAC3 dbd2f577-527b-4968-9279-350d4276addb e529975b2b074130d09f74424f9000a6 { 'aliquot_tag': 'ALQ_790b354e', 'gdc_sample_type': 'Primary Tumor' } C3N-01656.WGS.A C3N-01656 CCRCC WGS tissue_normal CPT0161930006 CPT0161930006.WholeGenome.RP-1303.bam 56061298391 BAM aligned CPTAC3 4dbc1898-85bc-489c-bc0d-0958c651852c f4602651b973eba45be93b180b1162fd { 'aliquot_tag': 'ALQ_e668c790', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01656.WGS.A.hg38 C3N-01656 CCRCC WGS tissue_normal CPT0161930006 055e61ad-20be-4560-97a9-3dc6a412afb9_wgs_gdc_realn.bam 83044201613 BAM harmonized CPTAC3 fd5daeca-04bc-45ea-9af6-8760d5166de0 89e8dc8cc334fe2ae474940155f473cd { 'aliquot_tag': 'ALQ_e668c790', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01656.WGS.N C3N-01656 CCRCC WGS blood_normal CPT0121650002 CPT0121650002.WholeGenome.RP-1303.bam 61230992030 BAM aligned CPTAC3 832f9d37-3696-4018-8864-f9fe2237203a 7fa64acc5a088ae9933d28956d7d8ef1 { 'aliquot_tag': 'ALQ_1b594a06', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26839,11 +28810,11 @@ C3N-01657.MethArray.Green.T C3N-01657 CCRCC Methylation Array tumor CPT012417000 C3N-01657.MethArray.Red.T C3N-01657 CCRCC Methylation Array tumor CPT0124170005 203219640172_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 961904da-7190-4ba3-9f97-8e3473d86661 21ee7d0dcd2477174c1300897c1c05d0 { 'aliquot_tag': 'ALQ_b0c093da', 'gdc_sample_type': 'Primary Tumor' } C3N-01657.miRNA-Seq.T C3N-01657 CCRCC miRNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0176_AHYGLVBBXX_CATTTT_S35_L005_R1_001.unaln.bam 353015860 BAM unaligned CPTAC3 010d7043-dbf5-4fa7-bf31-02fcded420ab 71ae2dade581d033a6dfc0015ee67ac5 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor' } C3N-01657.miRNA-Seq.T.hg38 C3N-01657 CCRCC miRNA-Seq tumor CPT0124170008 4d03b1b8-92f4-4765-98b2-5ac2dc205258_mirnaseq_gdc_realn.bam 379654123 BAM harmonized CPTAC3 472b3d68-7266-4efd-80ad-12e914bb790b 25a84bf786a07bbbf7282c21400f5dd0 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor' } -C3N-01657.RNA-Seq.chimeric.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 ba8da346-e615-4183-a383-a333b13cdbb4.rna_seq.chimeric.gdc_realn.bam 131844645 BAM chimeric harmonized CPTAC3 a7f1cbbe-ff0a-4444-a272-c6eb3e2d11db 5c647d1c0ff0b19f25f462dc2c43d8b9 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor' } -C3N-01657.RNA-Seq.genomic.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 ba8da346-e615-4183-a383-a333b13cdbb4.rna_seq.genomic.gdc_realn.bam 8616298627 BAM genomic harmonized CPTAC3 18973fd6-0be3-4d15-93cc-d062d5fe13fb feaede1e1a011b0f2a76c87c0b331ed0 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor' } -C3N-01657.RNA-Seq.R1_L004.T C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0177_BH32KTBBXY_GGCTAC_S13_L004_R1_001.fastq.gz 4119197432 FASTQ R1_L004 unaligned CPTAC3 155a088c-a883-4f0f-abe6-4101f436d139 8fd99c69917794c02ed8f27527795be7 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor' } -C3N-01657.RNA-Seq.R2_L004.T C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0177_BH32KTBBXY_GGCTAC_S13_L004_R2_001.fastq.gz 4565044949 FASTQ R2_L004 unaligned CPTAC3 924ba030-96b3-4a62-83e8-08586cfc53b9 ab80411de6035cffc3e6cad96cbefd88 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor' } -C3N-01657.RNA-Seq.transcriptome.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 ba8da346-e615-4183-a383-a333b13cdbb4.rna_seq.transcriptome.gdc_realn.bam 9042404814 BAM transcriptome harmonized CPTAC3 ecc889be-f779-4547-af6f-da8928c8349b 393aa25661456d42baa1407220f67624 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor' } +C3N-01657.RNA-Seq.chimeric.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 910e9cbd-e7bc-487b-bce4-586562b4605e.rna_seq.chimeric.gdc_realn.bam 131827574 BAM chimeric harmonized CPTAC3 73c4e717-755f-44b9-b90d-c8210ef6f027 a5a595aa77a25b4eca4ad40e80315bb2 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor' } +C3N-01657.RNA-Seq.genomic.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 910e9cbd-e7bc-487b-bce4-586562b4605e.rna_seq.genomic.gdc_realn.bam 8618047377 BAM genomic harmonized CPTAC3 5917d135-7f79-4c70-b30f-f19d34f3b15c 996673abbb34e35f17d47220161b0ace { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor' } +C3N-01657.RNA-Seq.R1_L004.T C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0177_BH32KTBBXY_GGCTAC_S13_L004_R1_001.fastq.gz 4119197432 FASTQ R1_L004 unaligned CPTAC3 155a088c-a883-4f0f-abe6-4101f436d139 8fd99c69917794c02ed8f27527795be7 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01657.RNA-Seq.R2_L004.T C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 190108_UNC31-K00269_0177_BH32KTBBXY_GGCTAC_S13_L004_R2_001.fastq.gz 4565044949 FASTQ R2_L004 unaligned CPTAC3 924ba030-96b3-4a62-83e8-08586cfc53b9 ab80411de6035cffc3e6cad96cbefd88 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01657.RNA-Seq.transcriptome.T.hg38 C3N-01657 CCRCC RNA-Seq tumor CPT0124170008 910e9cbd-e7bc-487b-bce4-586562b4605e.rna_seq.transcriptome.gdc_realn.bam 10428001597 BAM transcriptome harmonized CPTAC3 fef5eba1-b009-4e3a-8211-e347cbfd5d2a 6c500431a9b7d493d7ca1e9abdb222b2 { 'aliquot_tag': 'ALQ_ce71ef67', 'gdc_sample_type': 'Primary Tumor' } C3N-01657.WGS.N C3N-01657 CCRCC WGS blood_normal CPT0124200002 CPT0124200002.WholeGenome.RP-1303.bam 65915128205 BAM aligned CPTAC3 c4713a54-7351-41be-b5c7-8ab4362c3c06 19049b15a4d790ddf1c70fa58cb83a20 { 'aliquot_tag': 'ALQ_1a10a8c7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01657.WGS.N.hg38 C3N-01657 CCRCC WGS blood_normal CPT0124200002 39cebede-dac2-4854-94b8-0bc773153eb7_wgs_gdc_realn.bam 95665413430 BAM harmonized CPTAC3 c8846750-3b04-40b7-9a56-3fd485a1abba a0645065c4c35aa75835333ae9871eeb { 'aliquot_tag': 'ALQ_1a10a8c7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01657.WGS.T C3N-01657 CCRCC WGS tumor CPT0124170005 CPT0124170005.WholeGenome.RP-1303.bam 58993865903 BAM aligned CPTAC3 f9894393-fcb1-4c85-8f5a-b45c33ee3927 48e4ab38cc938c5f4f9d2f63a21444a5 { 'aliquot_tag': 'ALQ_b0c093da', 'gdc_sample_type': 'Primary Tumor' } @@ -26857,9 +28828,9 @@ C3N-01714.MethArray.Red.T C3N-01714 PDA Methylation Array tumor CPT0124360006 20 C3N-01714.miRNA-Seq.T C3N-01714 PDA miRNA-Seq tumor CPT0124360009 181108_UNC31-K00269_0162_AH255GBBXY_CGTACG_S46_L002_R1_001.unaln.bam 257655218 BAM unaligned CPTAC3 e4084f86-ad01-4c93-a3e4-7a8def3e3d51 6939f4d58b1d688ff07bf30aa9c450bf { 'aliquot_tag': 'ALQ_c9de574a', 'gdc_sample_type': 'Primary Tumor' } C3N-01714.miRNA-Seq.T.hg38 C3N-01714 PDA miRNA-Seq tumor CPT0124360009 03220016-40c4-432e-a999-361c4298ca4d_mirnaseq_gdc_realn.bam 280941647 BAM harmonized CPTAC3 9fb548d8-1c71-412a-a3ec-6f107c666938 491e3d183fe79abdaaa50fbbb46b0bd5 { 'aliquot_tag': 'ALQ_c9de574a', 'gdc_sample_type': 'Primary Tumor' } C3N-01714.RNA-Seq.chimeric.T.hg38 C3N-01714 PDA RNA-Seq tumor CPT0124360009 d7cd63fc-3eac-416f-8168-d89442b8f2cd.rna_seq.chimeric.gdc_realn.bam 129855423 BAM chimeric harmonized CPTAC3 da605fb2-3801-4bcd-bda2-e528e28b64d8 dfa6139b8b888cc6b9442db41c9216f6 { 'aliquot_tag': 'ALQ_c9de574a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01714.RNA-Seq.genomic.T.hg38 C3N-01714 PDA RNA-Seq tumor CPT0124360009 d7cd63fc-3eac-416f-8168-d89442b8f2cd.rna_seq.genomic.gdc_realn.bam 11221803663 BAM genomic harmonized CPTAC3 7a149e73-4987-4a58-adfd-425f5b1fe9f1 c60ccd35cbbd684fa710342dd9d2c76a { 'aliquot_tag': 'ALQ_c9de574a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01714.RNA-Seq.R1_L008.T C3N-01714 PDA RNA-Seq tumor CPT0124360009 180508_UNC31-K00269_0127_AHTV7YBBXX_GAGTGG_S63_L008_R1_001.fastq.gz 5018991485 FASTQ R1_L008 unaligned CPTAC3 7c110bdf-1f85-4055-8c8f-256e4524c878 686db6904ab9333d71fe1c68c4efe5d6 { 'aliquot_tag': 'ALQ_c9de574a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01714.RNA-Seq.R2_L008.T C3N-01714 PDA RNA-Seq tumor CPT0124360009 180508_UNC31-K00269_0127_AHTV7YBBXX_GAGTGG_S63_L008_R2_001.fastq.gz 5400252665 FASTQ R2_L008 unaligned CPTAC3 286e158d-1caf-43b2-86db-c11e373246b3 07bfd2a493115692152af1ca45e65b1c { 'aliquot_tag': 'ALQ_c9de574a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01714.RNA-Seq.genomic.T.hg38 C3N-01714 PDA RNA-Seq tumor CPT0124360009 d7cd63fc-3eac-416f-8168-d89442b8f2cd.rna_seq.genomic.gdc_realn.bam 11221803663 BAM genomic harmonized CPTAC3 cad81e4d-05f9-4708-948a-367f9cbaf75c c60ccd35cbbd684fa710342dd9d2c76a { 'aliquot_tag': 'ALQ_c9de574a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01714.RNA-Seq.R1_L008.T C3N-01714 PDA RNA-Seq tumor CPT0124360009 180508_UNC31-K00269_0127_AHTV7YBBXX_GAGTGG_S63_L008_R1_001.fastq.gz 5018991485 FASTQ R1_L008 unaligned CPTAC3 7c110bdf-1f85-4055-8c8f-256e4524c878 686db6904ab9333d71fe1c68c4efe5d6 { 'aliquot_tag': 'ALQ_c9de574a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01714.RNA-Seq.R2_L008.T C3N-01714 PDA RNA-Seq tumor CPT0124360009 180508_UNC31-K00269_0127_AHTV7YBBXX_GAGTGG_S63_L008_R2_001.fastq.gz 5400252665 FASTQ R2_L008 unaligned CPTAC3 286e158d-1caf-43b2-86db-c11e373246b3 07bfd2a493115692152af1ca45e65b1c { 'aliquot_tag': 'ALQ_c9de574a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01714.RNA-Seq.transcriptome.T.hg38 C3N-01714 PDA RNA-Seq tumor CPT0124360009 d7cd63fc-3eac-416f-8168-d89442b8f2cd.rna_seq.transcriptome.gdc_realn.bam 15695238774 BAM transcriptome harmonized CPTAC3 ec89184a-b5c0-4527-b253-f30b62b17096 0fea3aed5883f6bb286bff97032385e4 { 'aliquot_tag': 'ALQ_c9de574a', 'gdc_sample_type': 'Primary Tumor' } C3N-01714.WGS.N C3N-01714 PDA WGS blood_normal CPT0124390002 CPT0124390002.WholeGenome.RP-1303.bam 66812788025 BAM aligned CPTAC3 b8e48856-8a5e-4e83-a026-3932d3e88c9a 1dd8289d89719cebd5c21919fe412093 { 'aliquot_tag': 'ALQ_dc5c1913', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01714.WGS.N.hg38 C3N-01714 PDA WGS blood_normal CPT0124390002 68aee3d6-a976-4077-b5ca-d52924379119_wgs_gdc_realn.bam 97534057770 BAM harmonized CPTAC3 69a0da73-34e1-4644-8221-bc350f908dc2 3f8f89c68edf7386eec07083b3120f04 { 'aliquot_tag': 'ALQ_dc5c1913', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26878,9 +28849,9 @@ C3N-01715.MethArray.Red.T C3N-01715 PDA Methylation Array tumor CPT0125090006 20 C3N-01715.miRNA-Seq.T C3N-01715 PDA miRNA-Seq tumor CPT0125090009 181108_UNC31-K00269_0162_AH255GBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 220094750 BAM unaligned CPTAC3 176f46d5-c7eb-4a42-8b3f-d85bccff90db aaaeb269e9e140860cc49c403b2b843b { 'aliquot_tag': 'ALQ_6b6db981', 'gdc_sample_type': 'Primary Tumor' } C3N-01715.miRNA-Seq.T.hg38 C3N-01715 PDA miRNA-Seq tumor CPT0125090009 fc387d39-f4ce-44f9-a0ac-47007a2395a9_mirnaseq_gdc_realn.bam 240775400 BAM harmonized CPTAC3 3ea775c3-4d42-4f46-b295-e226831fd770 da97eea45f17314004b78cf372806755 { 'aliquot_tag': 'ALQ_6b6db981', 'gdc_sample_type': 'Primary Tumor' } C3N-01715.RNA-Seq.chimeric.T.hg38 C3N-01715 PDA RNA-Seq tumor CPT0125090009 b8763446-9db9-480a-b9a1-2da28e0ee02a.rna_seq.chimeric.gdc_realn.bam 118198236 BAM chimeric harmonized CPTAC3 0348f441-3a0d-46a6-8609-a2f813934ae9 09e79a87234a0e1c5472c86b026a5545 { 'aliquot_tag': 'ALQ_6b6db981', 'gdc_sample_type': 'Primary Tumor' } -C3N-01715.RNA-Seq.genomic.T.hg38 C3N-01715 PDA RNA-Seq tumor CPT0125090009 b8763446-9db9-480a-b9a1-2da28e0ee02a.rna_seq.genomic.gdc_realn.bam 9336964005 BAM genomic harmonized CPTAC3 2beb7dbd-afe7-4294-9169-6f87bfb15461 b3b60dcf8a501024f6b0a4e7ade94822 { 'aliquot_tag': 'ALQ_6b6db981', 'gdc_sample_type': 'Primary Tumor' } -C3N-01715.RNA-Seq.R1_L001.T C3N-01715 PDA RNA-Seq tumor CPT0125090009 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L001_R1_001.fastq.gz 4296880977 FASTQ R1_L001 unaligned CPTAC3 50bd8485-e402-4938-b53a-f194d3276492 e9911795a01fa322568b231a39ce96da { 'aliquot_tag': 'ALQ_6b6db981', 'gdc_sample_type': 'Primary Tumor' } -C3N-01715.RNA-Seq.R2_L001.T C3N-01715 PDA RNA-Seq tumor CPT0125090009 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L001_R2_001.fastq.gz 4687243407 FASTQ R2_L001 unaligned CPTAC3 2c7fbfea-a3f3-41a4-b5c4-5ec562ee4597 d186ad70faf9d15eb3e888456c9d23a4 { 'aliquot_tag': 'ALQ_6b6db981', 'gdc_sample_type': 'Primary Tumor' } +C3N-01715.RNA-Seq.genomic.T.hg38 C3N-01715 PDA RNA-Seq tumor CPT0125090009 b8763446-9db9-480a-b9a1-2da28e0ee02a.rna_seq.genomic.gdc_realn.bam 9336964005 BAM genomic harmonized CPTAC3 6c247f11-5438-425b-9fc0-704b04a4641a b3b60dcf8a501024f6b0a4e7ade94822 { 'aliquot_tag': 'ALQ_6b6db981', 'gdc_sample_type': 'Primary Tumor' } +C3N-01715.RNA-Seq.R1_L001.T C3N-01715 PDA RNA-Seq tumor CPT0125090009 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L001_R1_001.fastq.gz 4296880977 FASTQ R1_L001 unaligned CPTAC3 50bd8485-e402-4938-b53a-f194d3276492 e9911795a01fa322568b231a39ce96da { 'aliquot_tag': 'ALQ_6b6db981', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01715.RNA-Seq.R2_L001.T C3N-01715 PDA RNA-Seq tumor CPT0125090009 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L001_R2_001.fastq.gz 4687243407 FASTQ R2_L001 unaligned CPTAC3 2c7fbfea-a3f3-41a4-b5c4-5ec562ee4597 d186ad70faf9d15eb3e888456c9d23a4 { 'aliquot_tag': 'ALQ_6b6db981', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-01715.RNA-Seq.transcriptome.T.hg38 C3N-01715 PDA RNA-Seq tumor CPT0125090009 b8763446-9db9-480a-b9a1-2da28e0ee02a.rna_seq.transcriptome.gdc_realn.bam 12743167312 BAM transcriptome harmonized CPTAC3 d0ef368c-8c84-4f14-8070-2b4cdbfa31c8 45e86cb416dc997fb23675678654570a { 'aliquot_tag': 'ALQ_6b6db981', 'gdc_sample_type': 'Primary Tumor' } C3N-01715.WGS.N C3N-01715 PDA WGS blood_normal CPT0125120002 CPT0125120002.WholeGenome.RP-1303.bam 65615184278 BAM aligned CPTAC3 3593027c-2d58-4038-bf3e-9a0fbf882c39 ee11e8ae24efe4929c2e58914c9b5809 { 'aliquot_tag': 'ALQ_403382bd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01715.WGS.N.hg38 C3N-01715 PDA WGS blood_normal CPT0125120002 c59da17d-bed1-4cd9-a587-b069bb2fbd98_wgs_gdc_realn.bam 96955853870 BAM harmonized CPTAC3 ec5efeaa-2203-404e-a995-282e36b57ab8 3bca75ef726e1b353b86d72d964bee1a { 'aliquot_tag': 'ALQ_403382bd', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26899,9 +28870,9 @@ C3N-01716.MethArray.Red.T C3N-01716 PDA Methylation Array tumor CPT0125130006 20 C3N-01716.miRNA-Seq.T C3N-01716 PDA miRNA-Seq tumor CPT0125130009 181108_UNC31-K00269_0162_AH255GBBXY_CACCGG_S6_L001_R1_001.unaln.bam 209900275 BAM unaligned CPTAC3 84710192-48fa-4293-a887-fef6aa2a07c6 f0d3881f27af83966571257bdff707d3 { 'aliquot_tag': 'ALQ_ea817285', 'gdc_sample_type': 'Primary Tumor' } C3N-01716.miRNA-Seq.T.hg38 C3N-01716 PDA miRNA-Seq tumor CPT0125130009 56c22a82-29ac-4cb9-8db9-062beaf34848_mirnaseq_gdc_realn.bam 229334850 BAM harmonized CPTAC3 f5cbf907-7fd4-4856-9a08-db59c6b8398f eedad6262a9fbd22b52cef4f41def3e5 { 'aliquot_tag': 'ALQ_ea817285', 'gdc_sample_type': 'Primary Tumor' } C3N-01716.RNA-Seq.chimeric.T.hg38 C3N-01716 PDA RNA-Seq tumor CPT0125130009 505de8be-2e32-4b9c-b052-d41e28b32caa.rna_seq.chimeric.gdc_realn.bam 130856428 BAM chimeric harmonized CPTAC3 e6cc0533-fcbb-4036-b789-b4c030512d47 0de16c99ba2b53392c6d470496b71c9a { 'aliquot_tag': 'ALQ_ea817285', 'gdc_sample_type': 'Primary Tumor' } -C3N-01716.RNA-Seq.genomic.T.hg38 C3N-01716 PDA RNA-Seq tumor CPT0125130009 505de8be-2e32-4b9c-b052-d41e28b32caa.rna_seq.genomic.gdc_realn.bam 9344284403 BAM genomic harmonized CPTAC3 7fd70678-08f2-401d-90d3-57f43cad3c98 2d934450cdcf247b7225f74d4cf837b7 { 'aliquot_tag': 'ALQ_ea817285', 'gdc_sample_type': 'Primary Tumor' } -C3N-01716.RNA-Seq.R1_L007.T C3N-01716 PDA RNA-Seq tumor CPT0125130009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L007_R1_001.fastq.gz 4089443704 FASTQ R1_L007 unaligned CPTAC3 f7fcf236-ffb2-45eb-a71c-1634ca49b8a9 12e1c9c5fab15b0dc1066db16e87cbea { 'aliquot_tag': 'ALQ_ea817285', 'gdc_sample_type': 'Primary Tumor' } -C3N-01716.RNA-Seq.R2_L007.T C3N-01716 PDA RNA-Seq tumor CPT0125130009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L007_R2_001.fastq.gz 4568315750 FASTQ R2_L007 unaligned CPTAC3 7be2d14d-5e15-49a8-8ef7-e11a616c790d cd04d21c7dc1d4ae5d83dac0966aa32e { 'aliquot_tag': 'ALQ_ea817285', 'gdc_sample_type': 'Primary Tumor' } +C3N-01716.RNA-Seq.genomic.T.hg38 C3N-01716 PDA RNA-Seq tumor CPT0125130009 505de8be-2e32-4b9c-b052-d41e28b32caa.rna_seq.genomic.gdc_realn.bam 9344284403 BAM genomic harmonized CPTAC3 f1669bd6-85d6-4ccb-b8b1-3687e002ebb4 2d934450cdcf247b7225f74d4cf837b7 { 'aliquot_tag': 'ALQ_ea817285', 'gdc_sample_type': 'Primary Tumor' } +C3N-01716.RNA-Seq.R1_L007.T C3N-01716 PDA RNA-Seq tumor CPT0125130009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L007_R1_001.fastq.gz 4089443704 FASTQ R1_L007 unaligned CPTAC3 f7fcf236-ffb2-45eb-a71c-1634ca49b8a9 12e1c9c5fab15b0dc1066db16e87cbea { 'aliquot_tag': 'ALQ_ea817285', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01716.RNA-Seq.R2_L007.T C3N-01716 PDA RNA-Seq tumor CPT0125130009 180516_UNC31-K00269_0129_AHTWLFBBXX_GCCAAT_S6_L007_R2_001.fastq.gz 4568315750 FASTQ R2_L007 unaligned CPTAC3 7be2d14d-5e15-49a8-8ef7-e11a616c790d cd04d21c7dc1d4ae5d83dac0966aa32e { 'aliquot_tag': 'ALQ_ea817285', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01716.RNA-Seq.transcriptome.T.hg38 C3N-01716 PDA RNA-Seq tumor CPT0125130009 505de8be-2e32-4b9c-b052-d41e28b32caa.rna_seq.transcriptome.gdc_realn.bam 12148763635 BAM transcriptome harmonized CPTAC3 22e8dc0f-2c79-44b6-ae7b-8482ad961592 f71e25ad373f72cb8de289f189a78537 { 'aliquot_tag': 'ALQ_ea817285', 'gdc_sample_type': 'Primary Tumor' } C3N-01716.WGS.N C3N-01716 PDA WGS blood_normal CPT0125150002 CPT0125150002.WholeGenome.RP-1303.bam 64160844121 BAM aligned CPTAC3 4d4009ed-23c5-4946-90db-b78be50f1db7 858bf6ca884b34643d095974012c79f0 { 'aliquot_tag': 'ALQ_f2135ead', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01716.WGS.N.hg38 C3N-01716 PDA WGS blood_normal CPT0125150002 d559c9d4-128c-4b40-b6aa-8018c5bab7cd_wgs_gdc_realn.bam 93452990656 BAM harmonized CPTAC3 ec4ca432-3017-4914-9bfd-bba1057bbf8d 3564369b62a92597b60cb635ce68ce6a { 'aliquot_tag': 'ALQ_f2135ead', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26926,11 +28897,11 @@ C3N-01719.miRNA-Seq.T.hg38 C3N-01719 PDA miRNA-Seq tumor CPT0161990011 01886ee8- C3N-01719.RNA-Seq.chimeric.A.hg38 C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 04a300fe-ee75-4664-bc13-df3d56499993.rna_seq.chimeric.gdc_realn.bam 48898087 BAM chimeric harmonized CPTAC3 44bbf404-8cea-4597-bfa0-21fff2028707 1c8ad1490fa26390389eb69e60bd12ea { 'aliquot_tag': 'ALQ_42a67410', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01719.RNA-Seq.chimeric.T.hg38 C3N-01719 PDA RNA-Seq tumor CPT0161990011 87c08eb7-bec9-4a4a-a101-716aa9e87cba.rna_seq.chimeric.gdc_realn.bam 26467013 BAM chimeric harmonized CPTAC3 f9cdea28-205d-4abf-a77b-eef9b33c1ccf 085851b27aad0078844bb59285e0c42a { 'aliquot_tag': 'ALQ_2ba77bd3', 'gdc_sample_type': 'Primary Tumor' } C3N-01719.RNA-Seq.genomic.A.hg38 C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 04a300fe-ee75-4664-bc13-df3d56499993.rna_seq.genomic.gdc_realn.bam 10527188458 BAM genomic harmonized CPTAC3 f28ffe33-c1aa-4562-bbb8-28d58e2ea85a 102dcfdbf9a42267b09613808bc81361 { 'aliquot_tag': 'ALQ_42a67410', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01719.RNA-Seq.genomic.T.hg38 C3N-01719 PDA RNA-Seq tumor CPT0161990011 87c08eb7-bec9-4a4a-a101-716aa9e87cba.rna_seq.genomic.gdc_realn.bam 6925871959 BAM genomic harmonized CPTAC3 c3354c53-9366-4d92-bbf3-949889f1fb21 78bab2bde37e5909a1f2df5efe4f93f4 { 'aliquot_tag': 'ALQ_2ba77bd3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01719.RNA-Seq.R1_L003.T C3N-01719 PDA RNA-Seq tumor CPT0161990011 190621_UNC32-K00270_0185_BH7G72BBXY_GTCTACAC-GCCAAGGT_S9_L003_R1_001.fastq.gz 3189427831 FASTQ R1_L003 unaligned CPTAC3 d7440a99-7aa5-460e-9b8c-4dbca84af7a8 9b48373571c2b20415765a8521f28f2f { 'aliquot_tag': 'ALQ_2ba77bd3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01719.RNA-Seq.R1_L006.A C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 190702_UNC32-K00270_0188_BH7CLJBBXY_ACTAAGAT-AACCGCGG_S22_L006_R1_001.fastq.gz 4871038110 FASTQ R1_L006 unaligned CPTAC3 7fd03820-fc9b-4b52-b9e3-4101e9df0c6f f612fd652c87f1330fa8933bc0d3c94d { 'aliquot_tag': 'ALQ_42a67410', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01719.RNA-Seq.R2_L003.T C3N-01719 PDA RNA-Seq tumor CPT0161990011 190621_UNC32-K00270_0185_BH7G72BBXY_GTCTACAC-GCCAAGGT_S9_L003_R2_001.fastq.gz 3511679826 FASTQ R2_L003 unaligned CPTAC3 17b70038-d642-4bc9-a9ea-3c94ba247cd0 1a22e1f53f58e10b0bb8e4246ae9b615 { 'aliquot_tag': 'ALQ_2ba77bd3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01719.RNA-Seq.R2_L006.A C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 190702_UNC32-K00270_0188_BH7CLJBBXY_ACTAAGAT-AACCGCGG_S22_L006_R2_001.fastq.gz 5487729066 FASTQ R2_L006 unaligned CPTAC3 45781656-43b0-4ca4-a6e3-26d7f2872ba7 9ed1ff0c40662b85f3bcac59b5465780 { 'aliquot_tag': 'ALQ_42a67410', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01719.RNA-Seq.genomic.T.hg38 C3N-01719 PDA RNA-Seq tumor CPT0161990011 87c08eb7-bec9-4a4a-a101-716aa9e87cba.rna_seq.genomic.gdc_realn.bam 6925871959 BAM genomic harmonized CPTAC3 40ac005e-2f67-477d-898e-158cd4976fa1 78bab2bde37e5909a1f2df5efe4f93f4 { 'aliquot_tag': 'ALQ_2ba77bd3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01719.RNA-Seq.R1_L003.T C3N-01719 PDA RNA-Seq tumor CPT0161990011 190621_UNC32-K00270_0185_BH7G72BBXY_GTCTACAC-GCCAAGGT_S9_L003_R1_001.fastq.gz 3189427831 FASTQ R1_L003 unaligned CPTAC3 d7440a99-7aa5-460e-9b8c-4dbca84af7a8 9b48373571c2b20415765a8521f28f2f { 'aliquot_tag': 'ALQ_2ba77bd3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01719.RNA-Seq.R1_L006.A C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 190702_UNC32-K00270_0188_BH7CLJBBXY_ACTAAGAT-AACCGCGG_S22_L006_R1_001.fastq.gz 4871038110 FASTQ R1_L006 unaligned CPTAC3 7fd03820-fc9b-4b52-b9e3-4101e9df0c6f f612fd652c87f1330fa8933bc0d3c94d { 'aliquot_tag': 'ALQ_42a67410', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01719.RNA-Seq.R2_L003.T C3N-01719 PDA RNA-Seq tumor CPT0161990011 190621_UNC32-K00270_0185_BH7G72BBXY_GTCTACAC-GCCAAGGT_S9_L003_R2_001.fastq.gz 3511679826 FASTQ R2_L003 unaligned CPTAC3 17b70038-d642-4bc9-a9ea-3c94ba247cd0 1a22e1f53f58e10b0bb8e4246ae9b615 { 'aliquot_tag': 'ALQ_2ba77bd3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01719.RNA-Seq.R2_L006.A C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 190702_UNC32-K00270_0188_BH7CLJBBXY_ACTAAGAT-AACCGCGG_S22_L006_R2_001.fastq.gz 5487729066 FASTQ R2_L006 unaligned CPTAC3 45781656-43b0-4ca4-a6e3-26d7f2872ba7 9ed1ff0c40662b85f3bcac59b5465780 { 'aliquot_tag': 'ALQ_42a67410', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-01719.RNA-Seq.transcriptome.A.hg38 C3N-01719 PDA RNA-Seq tissue_normal CPT0125160010 04a300fe-ee75-4664-bc13-df3d56499993.rna_seq.transcriptome.gdc_realn.bam 13527028690 BAM transcriptome harmonized CPTAC3 def6906a-7923-4830-a7d2-f24b55470667 cdb17b916942260e2484e619d82cfa64 { 'aliquot_tag': 'ALQ_42a67410', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01719.RNA-Seq.transcriptome.T.hg38 C3N-01719 PDA RNA-Seq tumor CPT0161990011 87c08eb7-bec9-4a4a-a101-716aa9e87cba.rna_seq.transcriptome.gdc_realn.bam 8238646320 BAM transcriptome harmonized CPTAC3 9b1c4ae8-b4d0-479d-9bce-ef13632cac62 c8d437d2c0b2b1b76166c17693ca59f7 { 'aliquot_tag': 'ALQ_2ba77bd3', 'gdc_sample_type': 'Primary Tumor' } C3N-01719.WGS.N C3N-01719 PDA WGS blood_normal CPT0125200002 CPT0125200002.WholeGenome.RP-1303.bam 86834854314 BAM aligned CPTAC3 beea60f6-8d50-4d46-a077-c295eb1ca867 48fd130658b13901bb4cce8b1eb3813d { 'aliquot_tag': 'ALQ_bc67a373', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26949,8 +28920,8 @@ C3N-01752.miRNA-Seq.T C3N-01752 HNSCC miRNA-Seq tumor CPT0162940009 190228_UNC32 C3N-01752.miRNA-Seq.T.hg38 C3N-01752 HNSCC miRNA-Seq tumor CPT0162940009 4dc7f05e-c4b6-4e17-9370-de3c2a54380f_mirnaseq_gdc_realn.bam 191643961 BAM harmonized CPTAC3 fcb9b00a-8ad6-4fc1-812f-81ad040cd6bb a199bf399cf2ab06e10bd3e9d4ca7c2d { 'aliquot_tag': 'ALQ_f51f1c8c', 'gdc_sample_type': 'Primary Tumor' } C3N-01752.RNA-Seq.chimeric.T.hg38 C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 f473711e-580d-447b-b93a-13040db5fc14.rna_seq.chimeric.gdc_realn.bam 217632269 BAM chimeric harmonized CPTAC3 cc713f7c-4cac-4f7a-89bb-52d6c1a7a09f 3264cedf153212c0eb706574efb01785 { 'aliquot_tag': 'ALQ_f51f1c8c', 'gdc_sample_type': 'Primary Tumor' } C3N-01752.RNA-Seq.genomic.T.hg38 C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 f473711e-580d-447b-b93a-13040db5fc14.rna_seq.genomic.gdc_realn.bam 8561737964 BAM genomic harmonized CPTAC3 5d609718-c470-43ef-b8dd-0286de2c21be 30bd6fa523cef30d2db2939fc664890e { 'aliquot_tag': 'ALQ_f51f1c8c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01752.RNA-Seq.R1_L005.T C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGTACG_S20_L005_R1_001.fastq.gz 4055071799 FASTQ R1_L005 unaligned CPTAC3 f6ca52a8-000d-43e0-87b2-f7707ab8347b 0c4e47083c1c24e31605875fe092435c { 'aliquot_tag': 'ALQ_f51f1c8c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01752.RNA-Seq.R2_L005.T C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGTACG_S20_L005_R2_001.fastq.gz 4346231843 FASTQ R2_L005 unaligned CPTAC3 edaae8f5-877b-408e-8b20-2b104ac9ddbb 3e583623374650b560a912241ab8cfe8 { 'aliquot_tag': 'ALQ_f51f1c8c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01752.RNA-Seq.R1_L005.T C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGTACG_S20_L005_R1_001.fastq.gz 4055071799 FASTQ R1_L005 unaligned CPTAC3 f6ca52a8-000d-43e0-87b2-f7707ab8347b 0c4e47083c1c24e31605875fe092435c { 'aliquot_tag': 'ALQ_f51f1c8c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01752.RNA-Seq.R2_L005.T C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGTACG_S20_L005_R2_001.fastq.gz 4346231843 FASTQ R2_L005 unaligned CPTAC3 edaae8f5-877b-408e-8b20-2b104ac9ddbb 3e583623374650b560a912241ab8cfe8 { 'aliquot_tag': 'ALQ_f51f1c8c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-01752.RNA-Seq.transcriptome.T.hg38 C3N-01752 HNSCC RNA-Seq tumor CPT0162940009 f473711e-580d-447b-b93a-13040db5fc14.rna_seq.transcriptome.gdc_realn.bam 11466253419 BAM transcriptome harmonized CPTAC3 75211923-e05f-4313-8c87-4f334cb7d319 61f1050eb4a690eaea6615f29fd84f56 { 'aliquot_tag': 'ALQ_f51f1c8c', 'gdc_sample_type': 'Primary Tumor' } C3N-01752.WGS.N C3N-01752 HNSCC WGS blood_normal CPT0162970002 CPT0162970002.WholeGenome.RP-1303.bam 67851793377 BAM aligned CPTAC3 8e71c071-5743-4e88-8411-cd479a1c3133 79c74a4551cdb40d3a3ea69a9f39447b { 'aliquot_tag': 'ALQ_256dbfd4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01752.WGS.N.hg38 C3N-01752 HNSCC WGS blood_normal CPT0162970002 2e8363b7-12e5-40bf-aff4-a47942232f8d_wgs_gdc_realn.bam 101033808844 BAM harmonized CPTAC3 9b125e0c-511d-4fc0-beeb-adf2bc0e1ecf d7ef93642e6f00fa091dc41340f1e654 { 'aliquot_tag': 'ALQ_256dbfd4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -26970,16 +28941,19 @@ C3N-01754.miRNA-Seq.T C3N-01754 HNSCC miRNA-Seq tumor CPT0162990010 190228_UNC32 C3N-01754.miRNA-Seq.T.hg38 C3N-01754 HNSCC miRNA-Seq tumor CPT0162990010 a8d10f17-0be5-4947-b08e-d1c47ea5c30b_mirnaseq_gdc_realn.bam 207342619 BAM harmonized CPTAC3 5d56a44a-6ab9-4977-ad82-7d40c39779a9 c2e4282ddca1727a7456494a5d658441 { 'aliquot_tag': 'ALQ_6d4851d8', 'gdc_sample_type': 'Primary Tumor' } C3N-01754.RNA-Seq.chimeric.A.hg38 C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 22f1bc7d-e66a-43ba-827a-a7b4c034ff62.rna_seq.chimeric.gdc_realn.bam 141759436 BAM chimeric harmonized CPTAC3 02ab9e2a-d1e1-440f-851b-96955aa885ee 207ba061a3c30b2262f09014783e042f { 'aliquot_tag': 'ALQ_fb27b350', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01754.RNA-Seq.chimeric.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 05c9a203-2a2f-4767-8190-49cf18826b84.rna_seq.chimeric.gdc_realn.bam 182730586 BAM chimeric harmonized CPTAC3 4c130270-5cf6-4cad-bc72-aa0b4caba746 fcf134c12d305d04ac890446898d5de0 { 'aliquot_tag': 'ALQ_6d4851d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01754.RNA-Seq.chimeric.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 833cb7cc-7ba9-4a96-b6d9-1fd3563317b3.rna_seq.chimeric.gdc_realn.bam 142744166 BAM chimeric harmonized CPTAC3 76d3b48f-b997-43ae-984a-107224b6f9e9 4ae96a67ea9e7449e40e4b77a9b04e61 { 'aliquot_tag': 'ALQ_9f36d02a', 'gdc_sample_type': 'Primary Tumor' } C3N-01754.RNA-Seq.genomic.A.hg38 C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 22f1bc7d-e66a-43ba-827a-a7b4c034ff62.rna_seq.genomic.gdc_realn.bam 7758351009 BAM genomic harmonized CPTAC3 65bd130c-cb92-4001-8450-6789583a5850 785150c87528f618c6be7525b9ddd9ef { 'aliquot_tag': 'ALQ_fb27b350', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01754.RNA-Seq.genomic.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 05c9a203-2a2f-4767-8190-49cf18826b84.rna_seq.genomic.gdc_realn.bam 8485660291 BAM genomic harmonized CPTAC3 9fa3c02d-f243-4e70-a604-851b9695c5b1 e5ce8686a3e84fe39af6fc59cb3cbebf { 'aliquot_tag': 'ALQ_6d4851d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01754.RNA-Seq.R1_L006.A C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGAAA_S14_L006_R1_001.fastq.gz 3832460782 FASTQ R1_L006 unaligned CPTAC3 d4cfe46e-ebcc-401f-a98b-739401e778aa 6214a5cc052b99b9057f6e2e290dfcd2 { 'aliquot_tag': 'ALQ_fb27b350', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01754.RNA-Seq.R1_L006.T C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 190215_UNC32-K00270_0147_AH3VGHBBXY_GAGTGG_S22_L006_R1_001.fastq.gz 3863264626 FASTQ R1_L006 unaligned CPTAC3 af97e771-a0cb-4a7d-896a-66e299b7eac2 b43b2d7eccb2945dfbb9e663d7ceff23 { 'aliquot_tag': 'ALQ_6d4851d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01754.RNA-Seq.R1_.T C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 20210723_P2_H6_WB7988-plate2_S90_R1_001.fastq.gz 3836235190 FASTQ R1_ unaligned CPTAC3 6b2470c7-e0c1-4387-bd3b-87c780218925 645c4f11db003c223ee791fb6a72d708 { 'aliquot_tag': 'ALQ_9f36d02a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01754.RNA-Seq.R2_L006.A C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGAAA_S14_L006_R2_001.fastq.gz 3813959170 FASTQ R2_L006 unaligned CPTAC3 e93a68b4-767b-49b3-b6d8-939cec972089 739fef87eb7a11c78a7ff02560f6d14a { 'aliquot_tag': 'ALQ_fb27b350', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01754.RNA-Seq.R2_L006.T C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 190215_UNC32-K00270_0147_AH3VGHBBXY_GAGTGG_S22_L006_R2_001.fastq.gz 4289613358 FASTQ R2_L006 unaligned CPTAC3 8b7f9302-5656-4fe6-9a50-4d83225a59f5 22a274eb2884c836742e5b6b116bc7cf { 'aliquot_tag': 'ALQ_6d4851d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01754.RNA-Seq.R2_.T C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 20210723_P2_H6_WB7988-plate2_S90_R2_001.fastq.gz 3938439570 FASTQ R2_ unaligned CPTAC3 36a2c727-a757-4e55-a2f6-da1b0898cdcd 4e11fc4d3690ee8f5fc16ef3f1300017 { 'aliquot_tag': 'ALQ_9f36d02a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01754.RNA-Seq.genomic.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 05c9a203-2a2f-4767-8190-49cf18826b84.rna_seq.genomic.gdc_realn.bam 8485660291 BAM genomic harmonized CPTAC3 9bf930d0-d4f8-4f8e-a83a-194e4cd33620 e5ce8686a3e84fe39af6fc59cb3cbebf { 'aliquot_tag': 'ALQ_6d4851d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01754.RNA-Seq.genomic.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 833cb7cc-7ba9-4a96-b6d9-1fd3563317b3.rna_seq.genomic.gdc_realn.bam 6921450695 BAM genomic harmonized CPTAC3 e07766fc-7035-4282-b47d-aefe9f04c029 bb246e62bfef2231e43230c502457fff { 'aliquot_tag': 'ALQ_9f36d02a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01754.RNA-Seq.R1_L006.A C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGAAA_S14_L006_R1_001.fastq.gz 3832460782 FASTQ R1_L006 unaligned CPTAC3 d4cfe46e-ebcc-401f-a98b-739401e778aa 6214a5cc052b99b9057f6e2e290dfcd2 { 'aliquot_tag': 'ALQ_fb27b350', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01754.RNA-Seq.R1_L006.T C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 190215_UNC32-K00270_0147_AH3VGHBBXY_GAGTGG_S22_L006_R1_001.fastq.gz 3863264626 FASTQ R1_L006 unaligned CPTAC3 af97e771-a0cb-4a7d-896a-66e299b7eac2 b43b2d7eccb2945dfbb9e663d7ceff23 { 'aliquot_tag': 'ALQ_6d4851d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01754.RNA-Seq.R2_L006.A C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 190219_UNC31-K00269_0194_AH3V53BBXY_GTGAAA_S14_L006_R2_001.fastq.gz 3813959170 FASTQ R2_L006 unaligned CPTAC3 e93a68b4-767b-49b3-b6d8-939cec972089 739fef87eb7a11c78a7ff02560f6d14a { 'aliquot_tag': 'ALQ_fb27b350', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01754.RNA-Seq.R2_L006.T C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 190215_UNC32-K00270_0147_AH3VGHBBXY_GAGTGG_S22_L006_R2_001.fastq.gz 4289613358 FASTQ R2_L006 unaligned CPTAC3 8b7f9302-5656-4fe6-9a50-4d83225a59f5 22a274eb2884c836742e5b6b116bc7cf { 'aliquot_tag': 'ALQ_6d4851d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01754.RNA-Seq.T C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 20210723_P2_H6_WB7988-plate2_S90_R1_001.fastq.gz 3836235190 FASTQ unaligned CPTAC3 6b2470c7-e0c1-4387-bd3b-87c780218925 645c4f11db003c223ee791fb6a72d708 +C3N-01754.RNA-Seq.T C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 20210723_P2_H6_WB7988-plate2_S90_R2_001.fastq.gz 3938439570 FASTQ unaligned CPTAC3 36a2c727-a757-4e55-a2f6-da1b0898cdcd 4e11fc4d3690ee8f5fc16ef3f1300017 C3N-01754.RNA-Seq.transcriptome.A.hg38 C3N-01754 HNSCC RNA-Seq tissue_normal CPT0163020009 22f1bc7d-e66a-43ba-827a-a7b4c034ff62.rna_seq.transcriptome.gdc_realn.bam 10282689117 BAM transcriptome harmonized CPTAC3 99561aeb-7d39-40ea-92c1-2e5060c84251 a3833e52a0d6fc49fca7af8df7ffd75a { 'aliquot_tag': 'ALQ_fb27b350', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01754.RNA-Seq.transcriptome.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0162990010 05c9a203-2a2f-4767-8190-49cf18826b84.rna_seq.transcriptome.gdc_realn.bam 11475869023 BAM transcriptome harmonized CPTAC3 176ee300-990a-4cf1-b40e-fc077d1d180e ce706e7c2b5a66f8cb319c18ab548018 { 'aliquot_tag': 'ALQ_6d4851d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01754.RNA-Seq.transcriptome.T.hg38 C3N-01754 HNSCC RNA-Seq tumor CPT0314740011 833cb7cc-7ba9-4a96-b6d9-1fd3563317b3.rna_seq.transcriptome.gdc_realn.bam 3907193336 BAM transcriptome harmonized CPTAC3 f9302afa-b221-4444-83d6-73faae71f927 143d506f7ab4b0e2350b9f3101e28585 { 'aliquot_tag': 'ALQ_9f36d02a', 'gdc_sample_type': 'Primary Tumor' } C3N-01754.WGS.N C3N-01754 HNSCC WGS blood_normal CPT0163080002 CPT0163080002.WholeGenome.RP-1303.bam 68524076907 BAM aligned CPTAC3 5d2d1978-b431-4cae-90bb-0fd8d4973701 2d585e4ad878b6955543b215be5eb753 { 'aliquot_tag': 'ALQ_26457279', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01754.WGS.N.hg38 C3N-01754 HNSCC WGS blood_normal CPT0163080002 118ac7c7-48cf-4449-b118-2125f7f1981f_wgs_gdc_realn.bam 100652972763 BAM harmonized CPTAC3 c6c9bf4d-09b1-4673-8ab2-e58962ff37e1 db1f8f14e9762407d5c901ede55baa98 { 'aliquot_tag': 'ALQ_26457279', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01754.WGS.T C3N-01754 HNSCC WGS tumor CPT0162990007 CPT0162990007.WholeGenome.RP-1303.bam 76877530042 BAM aligned CPTAC3 07f00f7c-9d9c-4b4e-a4c3-4c510356310c ef391be7a62b7419e38b55d1cacaf958 { 'aliquot_tag': 'ALQ_ea37f53a', 'gdc_sample_type': 'Primary Tumor' } @@ -26995,12 +28969,15 @@ C3N-01755.MethArray.Red.T C3N-01755 HNSCC Methylation Array tumor CPT0163090006 C3N-01755.miRNA-Seq.T C3N-01755 HNSCC miRNA-Seq tumor CPT0163090009 190228_UNC32-K00270_0151_AHYLY3BBXX_GAGTGG_S23_L001_R1_001.unaln.bam 271792516 BAM unaligned CPTAC3 77b1cbbc-429b-45c8-bc50-7762ef2f9922 f1633c24c8f6a16f0888695c6b09ed07 { 'aliquot_tag': 'ALQ_8cf78241', 'gdc_sample_type': 'Primary Tumor' } C3N-01755.miRNA-Seq.T.hg38 C3N-01755 HNSCC miRNA-Seq tumor CPT0163090009 2a192c9b-07c9-4163-958b-57d3bc3ddbee_mirnaseq_gdc_realn.bam 298822179 BAM harmonized CPTAC3 614e9b9a-cef5-4b25-a09a-3f3ad462b0e7 8a0740b1f50220f6a4d006fbba53c07f { 'aliquot_tag': 'ALQ_8cf78241', 'gdc_sample_type': 'Primary Tumor' } C3N-01755.RNA-Seq.chimeric.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 70a6bbd2-bebd-4571-9bb9-52d2b138a0da.rna_seq.chimeric.gdc_realn.bam 165938350 BAM chimeric harmonized CPTAC3 1230fb10-422d-4076-88cb-964bca063698 ed18288f45ca8bb20af51834d41d9b1f { 'aliquot_tag': 'ALQ_8cf78241', 'gdc_sample_type': 'Primary Tumor' } +C3N-01755.RNA-Seq.chimeric.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 fd454567-5f61-48d0-ba4c-ce2c409efec1.rna_seq.chimeric.gdc_realn.bam 183814197 BAM chimeric harmonized CPTAC3 5e38cf37-2f23-4d07-9d7d-4d43ceda7c6d 16c969215f854f9507854654c670f4a0 { 'aliquot_tag': 'ALQ_a256f99a', 'gdc_sample_type': 'Primary Tumor' } C3N-01755.RNA-Seq.genomic.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 70a6bbd2-bebd-4571-9bb9-52d2b138a0da.rna_seq.genomic.gdc_realn.bam 11109404070 BAM genomic harmonized CPTAC3 d27f57ed-3113-49ab-822f-e811b1abcec8 bb0a518a001f03c3dc6f066c95e40c72 { 'aliquot_tag': 'ALQ_8cf78241', 'gdc_sample_type': 'Primary Tumor' } -C3N-01755.RNA-Seq.R1_L006.T C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTGAT_S21_L006_R1_001.fastq.gz 4865120242 FASTQ R1_L006 unaligned CPTAC3 fe2ef44e-d4b5-4119-843d-c7f4047f82ea a743e8147f3807730de8129af6705aaa { 'aliquot_tag': 'ALQ_8cf78241', 'gdc_sample_type': 'Primary Tumor' } -C3N-01755.RNA-Seq.R1_.T C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 20210714_P1_F1_WB7988_plate1_S61_R1_001.fastq.gz 5870695173 FASTQ R1_ unaligned CPTAC3 175fb4bd-7530-490b-84b6-2e2669256990 67d0da3974f080b750ae122e8c4de96a { 'aliquot_tag': 'ALQ_a256f99a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01755.RNA-Seq.R2_L006.T C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTGAT_S21_L006_R2_001.fastq.gz 5301083450 FASTQ R2_L006 unaligned CPTAC3 fd70ab7f-7652-400a-9222-1d3fec1fc580 164dede06e6e1462b7663a355068312b { 'aliquot_tag': 'ALQ_8cf78241', 'gdc_sample_type': 'Primary Tumor' } -C3N-01755.RNA-Seq.R2_.T C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 20210714_P1_F1_WB7988_plate1_S61_R2_001.fastq.gz 6017065335 FASTQ R2_ unaligned CPTAC3 45d4f121-899e-4877-a7cf-8eb9617a5d05 ad53282e4fd80dc2aa0b2cc8997a52ca { 'aliquot_tag': 'ALQ_a256f99a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01755.RNA-Seq.genomic.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 fd454567-5f61-48d0-ba4c-ce2c409efec1.rna_seq.genomic.gdc_realn.bam 9091441744 BAM genomic harmonized CPTAC3 c0c1afd7-4ab6-4bb9-9a44-d4ff12488872 1e3e4aaf4b1647379c9d0eb6111644f2 { 'aliquot_tag': 'ALQ_a256f99a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01755.RNA-Seq.R1_L006.T C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTGAT_S21_L006_R1_001.fastq.gz 4865120242 FASTQ R1_L006 unaligned CPTAC3 fe2ef44e-d4b5-4119-843d-c7f4047f82ea a743e8147f3807730de8129af6705aaa { 'aliquot_tag': 'ALQ_8cf78241', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01755.RNA-Seq.R2_L006.T C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTGAT_S21_L006_R2_001.fastq.gz 5301083450 FASTQ R2_L006 unaligned CPTAC3 fd70ab7f-7652-400a-9222-1d3fec1fc580 164dede06e6e1462b7663a355068312b { 'aliquot_tag': 'ALQ_8cf78241', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01755.RNA-Seq.T C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 20210714_P1_F1_WB7988_plate1_S61_R1_001.fastq.gz 5870695173 FASTQ unaligned CPTAC3 175fb4bd-7530-490b-84b6-2e2669256990 67d0da3974f080b750ae122e8c4de96a +C3N-01755.RNA-Seq.T C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 20210714_P1_F1_WB7988_plate1_S61_R2_001.fastq.gz 6017065335 FASTQ unaligned CPTAC3 45d4f121-899e-4877-a7cf-8eb9617a5d05 ad53282e4fd80dc2aa0b2cc8997a52ca C3N-01755.RNA-Seq.transcriptome.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0163090009 70a6bbd2-bebd-4571-9bb9-52d2b138a0da.rna_seq.transcriptome.gdc_realn.bam 11160398861 BAM transcriptome harmonized CPTAC3 8f26ef32-2a57-45db-8ca4-ccbf3f0c453d ed1258df52579d196a8ef381b2867a8c { 'aliquot_tag': 'ALQ_8cf78241', 'gdc_sample_type': 'Primary Tumor' } +C3N-01755.RNA-Seq.transcriptome.T.hg38 C3N-01755 HNSCC RNA-Seq tumor CPT0314750011 fd454567-5f61-48d0-ba4c-ce2c409efec1.rna_seq.transcriptome.gdc_realn.bam 4860758086 BAM transcriptome harmonized CPTAC3 7df9b81e-b688-4886-866e-5fb5496c8be6 2232cc93ba3e23ad8de0c1c61c57e641 { 'aliquot_tag': 'ALQ_a256f99a', 'gdc_sample_type': 'Primary Tumor' } C3N-01755.WGS.N C3N-01755 HNSCC WGS blood_normal CPT0163150002 CPT0163150002.WholeGenome.RP-1303.bam 90072258813 BAM aligned CPTAC3 ba76ad94-33d5-47f9-97e8-8d13fb5f0c9b 2af15170c9c0e6abcffb14d07be53d87 { 'aliquot_tag': 'ALQ_1589656d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01755.WGS.N.hg38 C3N-01755 HNSCC WGS blood_normal CPT0163150002 ab796511-b5ad-401b-af77-1583a2273bb4_wgs_gdc_realn.bam 131476851643 BAM harmonized CPTAC3 c1331273-78f4-40df-b7d8-55a57bc46e7f 3c42750d1db0f5c16f5507a95a9fc479 { 'aliquot_tag': 'ALQ_1589656d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01755.WGS.T C3N-01755 HNSCC WGS tumor CPT0163090006 CPT0163090006.WholeGenome.RP-1303.bam 65888306801 BAM aligned CPTAC3 abe6381e-ea03-4044-9ceb-2b0e6393cfc1 8f02180b50361ba121a4c0e3b43e7e8e { 'aliquot_tag': 'ALQ_1c489fd0', 'gdc_sample_type': 'Primary Tumor' } @@ -27019,16 +28996,19 @@ C3N-01756.miRNA-Seq.T C3N-01756 HNSCC miRNA-Seq tumor CPT0163160009 190228_UNC32 C3N-01756.miRNA-Seq.T.hg38 C3N-01756 HNSCC miRNA-Seq tumor CPT0163160009 bf05be90-584e-4841-b6e6-68354a29986c_mirnaseq_gdc_realn.bam 248953531 BAM harmonized CPTAC3 768ae306-0785-4c1e-84b0-13e4c5e23e4e 768c39c023ea5ac13d6e55319ea701fe { 'aliquot_tag': 'ALQ_c5fbc635', 'gdc_sample_type': 'Primary Tumor' } C3N-01756.RNA-Seq.chimeric.A.hg38 C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 839b324e-91af-49c0-b5e0-eb5e7ebce2fe.rna_seq.chimeric.gdc_realn.bam 195183093 BAM chimeric harmonized CPTAC3 fb3a1a34-47d4-41a2-9840-2ac90a0fd0bd 580d652730f5f052d56206e258b0a44e { 'aliquot_tag': 'ALQ_f89bef85', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01756.RNA-Seq.chimeric.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 c2c0bc36-210f-45e6-8321-3a0821588afb.rna_seq.chimeric.gdc_realn.bam 280921252 BAM chimeric harmonized CPTAC3 60cfcc3c-4ea7-4ee5-afd3-3451c3d4fcf1 3ea8b4c4a532de57f446efb35ae7730a { 'aliquot_tag': 'ALQ_c5fbc635', 'gdc_sample_type': 'Primary Tumor' } -C3N-01756.RNA-Seq.genomic.A.hg38 C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 839b324e-91af-49c0-b5e0-eb5e7ebce2fe.rna_seq.genomic.gdc_realn.bam 8148333610 BAM genomic harmonized CPTAC3 a065290c-1d8e-43da-9bec-5cb79b080272 76bc5f3863158e3572d0b7d8266d5701 { 'aliquot_tag': 'ALQ_f89bef85', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01756.RNA-Seq.genomic.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 c2c0bc36-210f-45e6-8321-3a0821588afb.rna_seq.genomic.gdc_realn.bam 9380607461 BAM genomic harmonized CPTAC3 14cd40e3-e965-496e-9731-4ec129d3120b 1d727b820ec32474d7feb126cef9959b { 'aliquot_tag': 'ALQ_c5fbc635', 'gdc_sample_type': 'Primary Tumor' } -C3N-01756.RNA-Seq.R1_L004.A C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTCAA_S14_L004_R1_001.fastq.gz 3885627609 FASTQ R1_L004 unaligned CPTAC3 59dd90d6-bda7-4356-b32f-0c5fc3170509 b753286ec64164f298d9dee9b938e891 { 'aliquot_tag': 'ALQ_f89bef85', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01756.RNA-Seq.R1_L006.T C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATTCCT_S24_L006_R1_001.fastq.gz 4370446501 FASTQ R1_L006 unaligned CPTAC3 67b4e0a3-b9b0-4f36-9f08-6b5a544abfff cebe1d27fdce64414536a9755b726e9b { 'aliquot_tag': 'ALQ_c5fbc635', 'gdc_sample_type': 'Primary Tumor' } -C3N-01756.RNA-Seq.R1_.T C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 20210723_P2_D9_WB7988-plate2_S45_R1_001.fastq.gz 4161633442 FASTQ R1_ unaligned CPTAC3 4c14151c-9555-4aa9-975e-9652d2429c48 e245541bdad36f7f9f3a42aa2bf0c124 { 'aliquot_tag': 'ALQ_5ac63d2b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01756.RNA-Seq.R2_L004.A C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTCAA_S14_L004_R2_001.fastq.gz 4169497735 FASTQ R2_L004 unaligned CPTAC3 eea8501e-e2a6-4ab1-9dec-ff73840d93e5 41650dcd59d5446171cb145721f71e13 { 'aliquot_tag': 'ALQ_f89bef85', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01756.RNA-Seq.R2_L006.T C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATTCCT_S24_L006_R2_001.fastq.gz 4843574665 FASTQ R2_L006 unaligned CPTAC3 68c0adef-b7a8-41b1-8fc7-8939df30763a f04cca1f43f36d9a15137f91c4ca84fa { 'aliquot_tag': 'ALQ_c5fbc635', 'gdc_sample_type': 'Primary Tumor' } -C3N-01756.RNA-Seq.R2_.T C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 20210723_P2_D9_WB7988-plate2_S45_R2_001.fastq.gz 4236963203 FASTQ R2_ unaligned CPTAC3 31ba4176-8cb7-4442-894c-e9697bd16f21 e7feeaaf531b9e188c7429572e26d4d1 { 'aliquot_tag': 'ALQ_5ac63d2b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01756.RNA-Seq.chimeric.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 4059226a-d953-416c-8b2e-f40dfe13ceb6.rna_seq.chimeric.gdc_realn.bam 147196934 BAM chimeric harmonized CPTAC3 3c77b208-0aa8-4856-8741-373c50642acb ff98b5bc9248ce803ba89aa33688cdd2 { 'aliquot_tag': 'ALQ_5ac63d2b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01756.RNA-Seq.genomic.A.hg38 C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 839b324e-91af-49c0-b5e0-eb5e7ebce2fe.rna_seq.genomic.gdc_realn.bam 8148333610 BAM genomic harmonized CPTAC3 8ac56e47-e5cb-464a-8f77-b33e3653f018 76bc5f3863158e3572d0b7d8266d5701 { 'aliquot_tag': 'ALQ_f89bef85', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01756.RNA-Seq.genomic.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 c2c0bc36-210f-45e6-8321-3a0821588afb.rna_seq.genomic.gdc_realn.bam 9380607461 BAM genomic harmonized CPTAC3 64fd9568-ed5f-488a-8cde-ba1778e1ea70 1d727b820ec32474d7feb126cef9959b { 'aliquot_tag': 'ALQ_c5fbc635', 'gdc_sample_type': 'Primary Tumor' } +C3N-01756.RNA-Seq.genomic.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 4059226a-d953-416c-8b2e-f40dfe13ceb6.rna_seq.genomic.gdc_realn.bam 7313736093 BAM genomic harmonized CPTAC3 d087eaf1-bde3-438f-80aa-f1e19f9c669c 630c11ea8dab3b85ee33cb1262285eb9 { 'aliquot_tag': 'ALQ_5ac63d2b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01756.RNA-Seq.R1_L004.A C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTCAA_S14_L004_R1_001.fastq.gz 3885627609 FASTQ R1_L004 unaligned CPTAC3 59dd90d6-bda7-4356-b32f-0c5fc3170509 b753286ec64164f298d9dee9b938e891 { 'aliquot_tag': 'ALQ_f89bef85', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01756.RNA-Seq.R1_L006.T C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATTCCT_S24_L006_R1_001.fastq.gz 4370446501 FASTQ R1_L006 unaligned CPTAC3 67b4e0a3-b9b0-4f36-9f08-6b5a544abfff cebe1d27fdce64414536a9755b726e9b { 'aliquot_tag': 'ALQ_c5fbc635', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01756.RNA-Seq.R2_L004.A C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTCAA_S14_L004_R2_001.fastq.gz 4169497735 FASTQ R2_L004 unaligned CPTAC3 eea8501e-e2a6-4ab1-9dec-ff73840d93e5 41650dcd59d5446171cb145721f71e13 { 'aliquot_tag': 'ALQ_f89bef85', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01756.RNA-Seq.R2_L006.T C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATTCCT_S24_L006_R2_001.fastq.gz 4843574665 FASTQ R2_L006 unaligned CPTAC3 68c0adef-b7a8-41b1-8fc7-8939df30763a f04cca1f43f36d9a15137f91c4ca84fa { 'aliquot_tag': 'ALQ_c5fbc635', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01756.RNA-Seq.T C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 20210723_P2_D9_WB7988-plate2_S45_R1_001.fastq.gz 4161633442 FASTQ unaligned CPTAC3 4c14151c-9555-4aa9-975e-9652d2429c48 e245541bdad36f7f9f3a42aa2bf0c124 +C3N-01756.RNA-Seq.T C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 20210723_P2_D9_WB7988-plate2_S45_R2_001.fastq.gz 4236963203 FASTQ unaligned CPTAC3 31ba4176-8cb7-4442-894c-e9697bd16f21 e7feeaaf531b9e188c7429572e26d4d1 C3N-01756.RNA-Seq.transcriptome.A.hg38 C3N-01756 HNSCC RNA-Seq tissue_normal CPT0163170009 839b324e-91af-49c0-b5e0-eb5e7ebce2fe.rna_seq.transcriptome.gdc_realn.bam 11200663129 BAM transcriptome harmonized CPTAC3 44adbe9b-c896-4695-ad3b-9c31bdcd13a1 954dda4d65d9056a5bc1b3aca3180288 { 'aliquot_tag': 'ALQ_f89bef85', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01756.RNA-Seq.transcriptome.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0163160009 c2c0bc36-210f-45e6-8321-3a0821588afb.rna_seq.transcriptome.gdc_realn.bam 10312504072 BAM transcriptome harmonized CPTAC3 8fd40137-13d6-4fb9-a480-cb1dbfccdd3b e5602b28b217fd3be4b5c00843d0f095 { 'aliquot_tag': 'ALQ_c5fbc635', 'gdc_sample_type': 'Primary Tumor' } +C3N-01756.RNA-Seq.transcriptome.T.hg38 C3N-01756 HNSCC RNA-Seq tumor CPT0314780011 4059226a-d953-416c-8b2e-f40dfe13ceb6.rna_seq.transcriptome.gdc_realn.bam 3379953365 BAM transcriptome harmonized CPTAC3 727a5d61-988e-4921-b5ea-c6d36e3be4a3 9d1bb2608e74ff811cdc9ee75c8e69da { 'aliquot_tag': 'ALQ_5ac63d2b', 'gdc_sample_type': 'Primary Tumor' } C3N-01756.WGS.N C3N-01756 HNSCC WGS blood_normal CPT0163200002 CPT0163200002.WholeGenome.RP-1303.bam 64454668952 BAM aligned CPTAC3 99209135-2009-4af2-851a-1d61c139ef6b b19fe999fc0f8007c504f56c0751eaa8 { 'aliquot_tag': 'ALQ_5bfd98b3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01756.WGS.N.hg38 C3N-01756 HNSCC WGS blood_normal CPT0163200002 c77badda-9381-4940-8674-3eda70ed03ea_wgs_gdc_realn.bam 93971907616 BAM harmonized CPTAC3 927aecf9-5464-4e30-bcb2-551179520f5d 7a688ec5ea5ca4e302014c67e1bdcee2 { 'aliquot_tag': 'ALQ_5bfd98b3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01756.WGS.T C3N-01756 HNSCC WGS tumor CPT0163160006 CPT0163160006.WholeGenome.RP-1303.bam 68399522351 BAM aligned CPTAC3 8ef2515f-0df2-4358-98ca-4df8f9f70060 c22d04477ab00868481532da26247b62 { 'aliquot_tag': 'ALQ_5544dba4', 'gdc_sample_type': 'Primary Tumor' } @@ -27044,9 +29024,9 @@ C3N-01757.MethArray.Red.T C3N-01757 HNSCC Methylation Array tumor CPT0163240006 C3N-01757.miRNA-Seq.T C3N-01757 HNSCC miRNA-Seq tumor CPT0163240009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTGAT_S25_L002_R1_001.unaln.bam 197110833 BAM unaligned CPTAC3 292087bf-acec-4394-9743-7905306bd74a 90b328684e854a52d4482781ba765545 { 'aliquot_tag': 'ALQ_39afe7fb', 'gdc_sample_type': 'Primary Tumor' } C3N-01757.miRNA-Seq.T.hg38 C3N-01757 HNSCC miRNA-Seq tumor CPT0163240009 e648a52b-8fba-4ec3-9a0e-b2a2f6600a60_mirnaseq_gdc_realn.bam 219188978 BAM harmonized CPTAC3 aeb8c092-8874-4f7d-bc06-626f7902510a d2ccd554a1236b877d8f454cd5b5e207 { 'aliquot_tag': 'ALQ_39afe7fb', 'gdc_sample_type': 'Primary Tumor' } C3N-01757.RNA-Seq.chimeric.T.hg38 C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 a360f5ff-0bca-46a3-8e6a-4aa85df20eb2.rna_seq.chimeric.gdc_realn.bam 234479172 BAM chimeric harmonized CPTAC3 fcec5f57-2288-4c9a-980f-c0eb5cafadc6 abffff79d4727c28775ff9c050465349 { 'aliquot_tag': 'ALQ_39afe7fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01757.RNA-Seq.genomic.T.hg38 C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 a360f5ff-0bca-46a3-8e6a-4aa85df20eb2.rna_seq.genomic.gdc_realn.bam 9082605256 BAM genomic harmonized CPTAC3 3929b8ef-feda-4d77-a68a-252ac57f8b0a 63c6615a0e3e7d9b9cd8ac288035518e { 'aliquot_tag': 'ALQ_39afe7fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01757.RNA-Seq.R1_L007.T C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L007_R1_001.fastq.gz 4456435372 FASTQ R1_L007 unaligned CPTAC3 fa0aa6e7-66b7-4300-83db-5680970620b3 9811c0b18649951530111ae9cf36a815 { 'aliquot_tag': 'ALQ_39afe7fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01757.RNA-Seq.R2_L007.T C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L007_R2_001.fastq.gz 4188669057 FASTQ R2_L007 unaligned CPTAC3 f8716479-1ab4-4100-b1fa-59c3f8922cd2 e37bf6cd9d6736f195f536ce47e8ef18 { 'aliquot_tag': 'ALQ_39afe7fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-01757.RNA-Seq.genomic.T.hg38 C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 a360f5ff-0bca-46a3-8e6a-4aa85df20eb2.rna_seq.genomic.gdc_realn.bam 9082605256 BAM genomic harmonized CPTAC3 e21368d2-a54c-4ae9-9064-b54feef82815 63c6615a0e3e7d9b9cd8ac288035518e { 'aliquot_tag': 'ALQ_39afe7fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-01757.RNA-Seq.R1_L007.T C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L007_R1_001.fastq.gz 4456435372 FASTQ R1_L007 unaligned CPTAC3 fa0aa6e7-66b7-4300-83db-5680970620b3 9811c0b18649951530111ae9cf36a815 { 'aliquot_tag': 'ALQ_39afe7fb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01757.RNA-Seq.R2_L007.T C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L007_R2_001.fastq.gz 4188669057 FASTQ R2_L007 unaligned CPTAC3 f8716479-1ab4-4100-b1fa-59c3f8922cd2 e37bf6cd9d6736f195f536ce47e8ef18 { 'aliquot_tag': 'ALQ_39afe7fb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01757.RNA-Seq.transcriptome.T.hg38 C3N-01757 HNSCC RNA-Seq tumor CPT0163240009 a360f5ff-0bca-46a3-8e6a-4aa85df20eb2.rna_seq.transcriptome.gdc_realn.bam 11303429424 BAM transcriptome harmonized CPTAC3 95c13635-fd47-44eb-be6b-3c8d0c7f8fd7 9a359593232dbda74625654ee161544a { 'aliquot_tag': 'ALQ_39afe7fb', 'gdc_sample_type': 'Primary Tumor' } C3N-01757.WGS.N C3N-01757 HNSCC WGS blood_normal CPT0163310002 CPT0163310002.WholeGenome.RP-1303.bam 72045264156 BAM aligned CPTAC3 c12255a9-3bbb-465f-80dc-ea9a6702842e 5045f8ebc4b48e92c338da6a9fa61050 { 'aliquot_tag': 'ALQ_adc162a6', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01757.WGS.N.hg38 C3N-01757 HNSCC WGS blood_normal CPT0163310002 104e39d5-8690-4b15-b5f5-d59f8f8117e8_wgs_gdc_realn.bam 104465276829 BAM harmonized CPTAC3 76f853cb-15ad-43a3-a3c7-dbc7c36a828f 6e505ac14e174b34778801ae3a7ff4b6 { 'aliquot_tag': 'ALQ_adc162a6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27061,12 +29041,15 @@ C3N-01758.MethArray.Red.T C3N-01758 HNSCC Methylation Array tumor CPT0163340006 C3N-01758.miRNA-Seq.T C3N-01758 HNSCC miRNA-Seq tumor CPT0163340009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L002_R1_001.unaln.bam 245888549 BAM unaligned CPTAC3 c4ab8dd9-f35e-475e-a125-01a53732ffa6 1cccc75c0018c79c439a6a73a48d9f18 { 'aliquot_tag': 'ALQ_f2f3345e', 'gdc_sample_type': 'Primary Tumor' } C3N-01758.miRNA-Seq.T.hg38 C3N-01758 HNSCC miRNA-Seq tumor CPT0163340009 f4927550-6fdb-4c6c-9ee6-a72cc1bd0025_mirnaseq_gdc_realn.bam 271473254 BAM harmonized CPTAC3 051d9f95-1738-4cd2-ad4d-1b90b6815204 72e298a093bc37f5a74fff27e4794e11 { 'aliquot_tag': 'ALQ_f2f3345e', 'gdc_sample_type': 'Primary Tumor' } C3N-01758.RNA-Seq.chimeric.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 49407407-1983-4788-8f8d-c0be597f8f28.rna_seq.chimeric.gdc_realn.bam 214732566 BAM chimeric harmonized CPTAC3 4f82a3e2-f949-4250-afd8-ad5e143f5b36 d2c5044039e9083ce18bde188937eb3c { 'aliquot_tag': 'ALQ_f2f3345e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01758.RNA-Seq.genomic.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 49407407-1983-4788-8f8d-c0be597f8f28.rna_seq.genomic.gdc_realn.bam 8776393989 BAM genomic harmonized CPTAC3 a4916581-5c10-48c1-955a-246e1532d536 d8d8e01a126f17b321d64f21d3a79cb6 { 'aliquot_tag': 'ALQ_f2f3345e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01758.RNA-Seq.R1_L007.T C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L007_R1_001.fastq.gz 4295548882 FASTQ R1_L007 unaligned CPTAC3 11c566e5-9dbf-446c-8f74-2a5bccdc5ac7 53b952aab417d6ab6a6e086e5d1aeb8f { 'aliquot_tag': 'ALQ_f2f3345e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01758.RNA-Seq.R1_.T C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 20210723_P2_C9_WB7988-plate2_S33_R1_001.fastq.gz 5425566184 FASTQ R1_ unaligned CPTAC3 30c2b78b-555a-4bfc-86eb-aff6b94506f7 20ec7f1cbac62077da367c1fa960d1f1 { 'aliquot_tag': 'ALQ_14a0319f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01758.RNA-Seq.R2_L007.T C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L007_R2_001.fastq.gz 4544028689 FASTQ R2_L007 unaligned CPTAC3 7c46b56e-2c5b-4ccb-bf95-18dc3cb1390e 2a9921abea7ff547f8aa1fe34ef1432d { 'aliquot_tag': 'ALQ_f2f3345e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01758.RNA-Seq.R2_.T C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 20210723_P2_C9_WB7988-plate2_S33_R2_001.fastq.gz 5524554250 FASTQ R2_ unaligned CPTAC3 5638036a-5c90-41ee-b2f8-67671837706b 1ccf6c7d24a56f0ae7b025fae28c93b6 { 'aliquot_tag': 'ALQ_14a0319f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01758.RNA-Seq.chimeric.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 b4c9ce3f-a918-4585-bf4a-4dc4b3f1c30b.rna_seq.chimeric.gdc_realn.bam 198674862 BAM chimeric harmonized CPTAC3 ccdf470d-cde2-428b-93d1-9eae51c2adb0 a63449d3e2dce686b5841c84d2947c0e { 'aliquot_tag': 'ALQ_14a0319f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01758.RNA-Seq.genomic.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 49407407-1983-4788-8f8d-c0be597f8f28.rna_seq.genomic.gdc_realn.bam 8776393989 BAM genomic harmonized CPTAC3 d9a731b4-954a-4811-b9ae-7afcd3037edd d8d8e01a126f17b321d64f21d3a79cb6 { 'aliquot_tag': 'ALQ_f2f3345e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01758.RNA-Seq.genomic.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 b4c9ce3f-a918-4585-bf4a-4dc4b3f1c30b.rna_seq.genomic.gdc_realn.bam 9092215231 BAM genomic harmonized CPTAC3 3cdf0a71-47d1-465b-ab61-64854cde2bf9 9e42d32de0291c1aa3a1cc024e6cc2c3 { 'aliquot_tag': 'ALQ_14a0319f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01758.RNA-Seq.R1_L007.T C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L007_R1_001.fastq.gz 4295548882 FASTQ R1_L007 unaligned CPTAC3 11c566e5-9dbf-446c-8f74-2a5bccdc5ac7 53b952aab417d6ab6a6e086e5d1aeb8f { 'aliquot_tag': 'ALQ_f2f3345e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01758.RNA-Seq.R2_L007.T C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 190215_UNC32-K00270_0147_AH3VGHBBXY_CGATGT_S2_L007_R2_001.fastq.gz 4544028689 FASTQ R2_L007 unaligned CPTAC3 7c46b56e-2c5b-4ccb-bf95-18dc3cb1390e 2a9921abea7ff547f8aa1fe34ef1432d { 'aliquot_tag': 'ALQ_f2f3345e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01758.RNA-Seq.T C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 20210723_P2_C9_WB7988-plate2_S33_R1_001.fastq.gz 5425566184 FASTQ unaligned CPTAC3 30c2b78b-555a-4bfc-86eb-aff6b94506f7 20ec7f1cbac62077da367c1fa960d1f1 +C3N-01758.RNA-Seq.T C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 20210723_P2_C9_WB7988-plate2_S33_R2_001.fastq.gz 5524554250 FASTQ unaligned CPTAC3 5638036a-5c90-41ee-b2f8-67671837706b 1ccf6c7d24a56f0ae7b025fae28c93b6 C3N-01758.RNA-Seq.transcriptome.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0163340009 49407407-1983-4788-8f8d-c0be597f8f28.rna_seq.transcriptome.gdc_realn.bam 12095043441 BAM transcriptome harmonized CPTAC3 9c9f2c11-d6fd-40c1-b267-94044a71e3f8 05ead149aefbf969aa912bb72037e1df { 'aliquot_tag': 'ALQ_f2f3345e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01758.RNA-Seq.transcriptome.T.hg38 C3N-01758 HNSCC RNA-Seq tumor CPT0314860011 b4c9ce3f-a918-4585-bf4a-4dc4b3f1c30b.rna_seq.transcriptome.gdc_realn.bam 6425281428 BAM transcriptome harmonized CPTAC3 f2877e1d-b15b-469a-a877-15685a0dfdca ad6ebb179b44508c2bcd18429c2efa17 { 'aliquot_tag': 'ALQ_14a0319f', 'gdc_sample_type': 'Primary Tumor' } C3N-01758.WGS.N C3N-01758 HNSCC WGS blood_normal CPT0163400002 CPT0163400002.WholeGenome.RP-1303.bam 83248387366 BAM aligned CPTAC3 3265baad-dcb4-46ed-929e-2e48451ce84e 734ec99c1ab874a1ade79d3e5bce0e6e { 'aliquot_tag': 'ALQ_8da47bae', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01758.WGS.N.hg38 C3N-01758 HNSCC WGS blood_normal CPT0163400002 3bff291b-fc59-4261-816f-264d8247eb38_wgs_gdc_realn.bam 121567166996 BAM harmonized CPTAC3 c48e7a95-4c0b-4191-81b0-6eac27d27aaa 8767fda59b163ec7263aac52830a032d { 'aliquot_tag': 'ALQ_8da47bae', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01758.WGS.T C3N-01758 HNSCC WGS tumor CPT0163340006 CPT0163340006.WholeGenome.RP-1303.bam 74585642050 BAM aligned CPTAC3 62ad4766-ad0e-4024-b5be-613ac805d5ac 772ded85be81a3a286502c4c1154b936 { 'aliquot_tag': 'ALQ_624c29cf', 'gdc_sample_type': 'Primary Tumor' } @@ -27081,18 +29064,21 @@ C3N-01761.miRNA-Seq.A C3N-01761 UCEC miRNA-Seq tissue_normal CPT0116730009 19013 C3N-01761.miRNA-Seq.A.hg38 C3N-01761 UCEC miRNA-Seq tissue_normal CPT0116730009 3a0d040b-67d0-4a02-82c3-afe2129baf17_mirnaseq_gdc_realn.bam 264592827 BAM harmonized CPTAC3 4a343a0d-1e14-47fd-85d9-7ecf27cee056 e0274b4d48a339bd29e0958b79ea5644 { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01761.miRNA-Seq.T C3N-01761 UCEC miRNA-Seq tumor CPT0116710009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCCCGA_S46_L003_R1_001.unaln.bam 175878598 BAM unaligned CPTAC3 2284d362-1b86-4416-b08f-95c2441c88f8 26e7bb1867ba683b1588de4756bc45af { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor' } C3N-01761.miRNA-Seq.T.hg38 C3N-01761 UCEC miRNA-Seq tumor CPT0116710009 e4cb46c9-a54f-4838-9860-d36384265db7_mirnaseq_gdc_realn.bam 195992967 BAM harmonized CPTAC3 8a9e2af6-bdae-4e8f-b08e-737dd5b52c59 9cf3add7a1acb8bc48924a380e75dc94 { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor' } -C3N-01761.RNA-Seq.chimeric.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 a21bfe6f-99c1-448d-b8f8-03a8056be2b6.rna_seq.chimeric.gdc_realn.bam 50789108 BAM chimeric harmonized CPTAC3 af75a904-4c40-4216-b0ba-883ffb276030 ae251c2a4f7ce4191a9cddbd912889ff { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01761.RNA-Seq.chimeric.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 d4e957ab-b71d-40f0-bfb8-8ad9a81c7548.rna_seq.chimeric.gdc_realn.bam 36440907 BAM chimeric harmonized CPTAC3 a3e9a324-4b4c-4e80-95d4-562a5d7dc2cb 3f4bd55e14fdfad4e9dbc9d7bcf6dfed { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor' } -C3N-01761.RNA-Seq.genomic.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 a21bfe6f-99c1-448d-b8f8-03a8056be2b6.rna_seq.genomic.gdc_realn.bam 10325299905 BAM genomic harmonized CPTAC3 f2b6070d-34de-41cd-ae84-b48ab4377281 2506f87e88d97b4dc12e141300fba0b0 { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01761.RNA-Seq.genomic.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 d4e957ab-b71d-40f0-bfb8-8ad9a81c7548.rna_seq.genomic.gdc_realn.bam 9468738325 BAM genomic harmonized CPTAC3 3bdcfdab-1144-4424-b243-42d05cd07840 e44b65c88587357d78812c603956bf05 { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor' } -C3N-01761.RNA-Seq.R1_L001.A C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L001_R1_001.fastq.gz 4553195325 FASTQ R1_L001 unaligned CPTAC3 d3dcaa5c-6f97-4a6a-9391-455c3cab46ca 9c76744111118a6953639d6145b62c69 { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01761.RNA-Seq.R1_L007.T C3N-01761 UCEC RNA-Seq tumor CPT0116710009 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L007_R1_001.fastq.gz 4435924861 FASTQ R1_L007 unaligned CPTAC3 42123135-cc12-4961-990d-38bde0dc0f0d 819d746cab3ddc35dc35fccf3ebdc685 { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor' } -C3N-01761.RNA-Seq.R1_.T C3N-01761 UCEC RNA-Seq tumor CPT0351630001 20210729_P3_H8_WB7988-Plate3_S92_R1_001.fastq.gz 6478850368 FASTQ R1_ unaligned CPTAC3 902b5df0-d437-4706-b0af-7e87fea36aa4 526c584a616a3d568f30c0ea96b7b86a { 'aliquot_tag': 'ALQ_2923cf83', 'gdc_sample_type': 'Primary Tumor' } -C3N-01761.RNA-Seq.R2_L001.A C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L001_R2_001.fastq.gz 5127210148 FASTQ R2_L001 unaligned CPTAC3 f5c08b0d-bf9c-4952-8dea-e834e6c02edc ff58b4a0dd1a9e53732d303d7f6611c0 { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01761.RNA-Seq.R2_L007.T C3N-01761 UCEC RNA-Seq tumor CPT0116710009 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L007_R2_001.fastq.gz 4648359258 FASTQ R2_L007 unaligned CPTAC3 8aed8995-cd70-4c88-b44f-be92eedfa7c9 a09e2841f30f85ff211aabbf2c123aa3 { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor' } -C3N-01761.RNA-Seq.R2_.T C3N-01761 UCEC RNA-Seq tumor CPT0351630001 20210729_P3_H8_WB7988-Plate3_S92_R2_001.fastq.gz 6705468787 FASTQ R2_ unaligned CPTAC3 9e1838eb-04b2-4c63-a3d6-25602e239f3e f939790c43a66ed171427d8cc3b9f3b5 { 'aliquot_tag': 'ALQ_2923cf83', 'gdc_sample_type': 'Primary Tumor' } -C3N-01761.RNA-Seq.transcriptome.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 a21bfe6f-99c1-448d-b8f8-03a8056be2b6.rna_seq.transcriptome.gdc_realn.bam 10799225269 BAM transcriptome harmonized CPTAC3 167155b6-23ba-416f-8f0f-9b7b58fb7667 92dd80911810e7b722d1ce5809dd634f { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01761.RNA-Seq.transcriptome.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 d4e957ab-b71d-40f0-bfb8-8ad9a81c7548.rna_seq.transcriptome.gdc_realn.bam 11373179722 BAM transcriptome harmonized CPTAC3 0fff99e4-3c0b-46fd-9219-1bd299ce4b78 3301478b3a86b3aa761588628d84c970 { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor' } +C3N-01761.RNA-Seq.chimeric.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 d18f6904-caf9-4df7-80f2-f17d6de617a9.rna_seq.chimeric.gdc_realn.bam 50744942 BAM chimeric harmonized CPTAC3 83a15a2f-e198-40c2-9c16-f9f53d36f7f4 efd557cca3aa8c5284c7985ab1b316b5 { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01761.RNA-Seq.chimeric.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 13f5a8cd-f7a5-4ff1-a174-2111e3359902.rna_seq.chimeric.gdc_realn.bam 36431681 BAM chimeric harmonized CPTAC3 922f1597-f852-4c6e-8415-ddc3f51d5b4c e5d1cdffbd2b747d47bba93eb8843997 { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor' } +C3N-01761.RNA-Seq.chimeric.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0351630001 698a059b-4f0e-4efe-87ee-341df22b646c.rna_seq.chimeric.gdc_realn.bam 206912372 BAM chimeric harmonized CPTAC3 99f6e192-9456-4144-8673-005045437805 edc6a3d9ad80a2b855927d7813898f87 { 'aliquot_tag': 'ALQ_2923cf83', 'gdc_sample_type': 'Primary Tumor' } +C3N-01761.RNA-Seq.genomic.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 d18f6904-caf9-4df7-80f2-f17d6de617a9.rna_seq.genomic.gdc_realn.bam 10326755017 BAM genomic harmonized CPTAC3 5a30f7fd-5910-42b9-8c36-473fa3d2e791 73aa47b29052d2839d00750fc9a69faa { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01761.RNA-Seq.genomic.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 13f5a8cd-f7a5-4ff1-a174-2111e3359902.rna_seq.genomic.gdc_realn.bam 9471075829 BAM genomic harmonized CPTAC3 0c3362aa-e7d6-4e30-9ec9-da744b6a8437 4c135da72c91a28d6146959577fffa21 { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor' } +C3N-01761.RNA-Seq.genomic.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0351630001 698a059b-4f0e-4efe-87ee-341df22b646c.rna_seq.genomic.gdc_realn.bam 9395719955 BAM genomic harmonized CPTAC3 3196a08d-8aca-4f7c-b711-5f7e9465dabd 8888b4c32fbdcb88ec766716d50ee0f3 { 'aliquot_tag': 'ALQ_2923cf83', 'gdc_sample_type': 'Primary Tumor' } +C3N-01761.RNA-Seq.R1_L001.A C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L001_R1_001.fastq.gz 4553195325 FASTQ R1_L001 unaligned CPTAC3 d3dcaa5c-6f97-4a6a-9391-455c3cab46ca 9c76744111118a6953639d6145b62c69 { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01761.RNA-Seq.R1_L007.T C3N-01761 UCEC RNA-Seq tumor CPT0116710009 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L007_R1_001.fastq.gz 4435924861 FASTQ R1_L007 unaligned CPTAC3 42123135-cc12-4961-990d-38bde0dc0f0d 819d746cab3ddc35dc35fccf3ebdc685 { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01761.RNA-Seq.R2_L001.A C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L001_R2_001.fastq.gz 5127210148 FASTQ R2_L001 unaligned CPTAC3 f5c08b0d-bf9c-4952-8dea-e834e6c02edc ff58b4a0dd1a9e53732d303d7f6611c0 { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01761.RNA-Seq.R2_L007.T C3N-01761 UCEC RNA-Seq tumor CPT0116710009 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L007_R2_001.fastq.gz 4648359258 FASTQ R2_L007 unaligned CPTAC3 8aed8995-cd70-4c88-b44f-be92eedfa7c9 a09e2841f30f85ff211aabbf2c123aa3 { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01761.RNA-Seq.T C3N-01761 UCEC RNA-Seq tumor CPT0351630001 20210729_P3_H8_WB7988-Plate3_S92_R1_001.fastq.gz 6478850368 FASTQ unaligned CPTAC3 902b5df0-d437-4706-b0af-7e87fea36aa4 526c584a616a3d568f30c0ea96b7b86a +C3N-01761.RNA-Seq.T C3N-01761 UCEC RNA-Seq tumor CPT0351630001 20210729_P3_H8_WB7988-Plate3_S92_R2_001.fastq.gz 6705468787 FASTQ unaligned CPTAC3 9e1838eb-04b2-4c63-a3d6-25602e239f3e f939790c43a66ed171427d8cc3b9f3b5 +C3N-01761.RNA-Seq.transcriptome.A.hg38 C3N-01761 UCEC RNA-Seq tissue_normal CPT0116730009 d18f6904-caf9-4df7-80f2-f17d6de617a9.rna_seq.transcriptome.gdc_realn.bam 12405732133 BAM transcriptome harmonized CPTAC3 adb0ccf7-5c4b-47d3-9fa5-e59b819a1b4b 3d38525275c7ae2a1b0b40a4615965c6 { 'aliquot_tag': 'ALQ_83bf8ce6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01761.RNA-Seq.transcriptome.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0116710009 13f5a8cd-f7a5-4ff1-a174-2111e3359902.rna_seq.transcriptome.gdc_realn.bam 12919620725 BAM transcriptome harmonized CPTAC3 01892a3d-1e9f-435b-96fc-8ebcb200b1b3 af3579cc4baa4b233a5e919420d68eaf { 'aliquot_tag': 'ALQ_f97fdf86', 'gdc_sample_type': 'Primary Tumor' } +C3N-01761.RNA-Seq.transcriptome.T.hg38 C3N-01761 UCEC RNA-Seq tumor CPT0351630001 698a059b-4f0e-4efe-87ee-341df22b646c.rna_seq.transcriptome.gdc_realn.bam 4966070757 BAM transcriptome harmonized CPTAC3 bedf9ed4-922b-40d5-8134-fb50b42fde92 dc82762cc97f79fa71605653368cee28 { 'aliquot_tag': 'ALQ_2923cf83', 'gdc_sample_type': 'Primary Tumor' } C3N-01761.WGS.A C3N-01761 UCEC WGS tissue_normal CPT0116730006 CPT0116730006.WholeGenome.RP-1303.bam 62080336140 BAM aligned CPTAC3 1000279b-f0e0-4fa2-adc6-3f88effa9d83 4aca63b69b618b6e8a2098d8fe548b47 { 'aliquot_tag': 'ALQ_13009177', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01761.WGS.A.hg38 C3N-01761 UCEC WGS tissue_normal CPT0116730006 c84d7702-d800-4bfa-a134-0d1bb8ea223f_wgs_gdc_realn.bam 90757289222 BAM harmonized CPTAC3 9ad0a850-d443-4b27-9b44-882e6546806a 89579eb07a9f8b9d07716db63429649e { 'aliquot_tag': 'ALQ_13009177', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01761.WGS.N C3N-01761 UCEC WGS blood_normal CPT0116770002 CPT0116770002.WholeGenome.RP-1303.bam 56363089556 BAM aligned CPTAC3 d62aba1e-954c-46eb-bced-787133740abb 61eb5a1bbf9015adfcbb561a83760b14 { 'aliquot_tag': 'ALQ_e1edf3ae', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27111,16 +29097,16 @@ C3N-01763.miRNA-Seq.T C3N-01763 UCEC miRNA-Seq tumor CPT0116850047 190508_UNC31- C3N-01763.miRNA-Seq.T C3N-01763 UCEC miRNA-Seq tumor CPT0116860009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCGAAG_S47_L003_R1_001.unaln.bam 210384316 BAM unaligned CPTAC3 cef09340-c858-406c-b0b0-f1c1a98676ee 36cb75ad03132528daa24c6a73993f15 { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor' } C3N-01763.miRNA-Seq.T.hg38 C3N-01763 UCEC miRNA-Seq tumor CPT0116850047 6ae435b8-6206-45a6-8202-5da4a085d070_mirnaseq_gdc_realn.bam 293857045 BAM harmonized CPTAC3 ee8a6ac9-24e0-420b-919b-9d7da7d44efe e49f8e05f799a51e8ae8000bdc957f12 { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor' } C3N-01763.miRNA-Seq.T.hg38 C3N-01763 UCEC miRNA-Seq tumor CPT0116860009 e62b0035-272a-4ee1-b2c4-a0197f04e058_mirnaseq_gdc_realn.bam 234584599 BAM harmonized CPTAC3 6f013723-651d-429c-af97-fa40ec1039d7 1b76b951b2c9f998f219d9da512b260e { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor' } -C3N-01763.RNA-Seq.chimeric.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 6d296048-28bc-48b7-8b9e-92a79b2ee0a4.rna_seq.chimeric.gdc_realn.bam 40979398 BAM chimeric harmonized CPTAC3 f2564282-3271-475d-ae25-21a5c372fcd4 a5b4c47e0031764dfd89c83165b946c1 { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor' } -C3N-01763.RNA-Seq.chimeric.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 973b5356-2a21-4fda-9e96-9ba6105e2387.rna_seq.chimeric.gdc_realn.bam 25306475 BAM chimeric harmonized CPTAC3 cd96d02b-be88-4c73-bf25-b2c3c2cd14fc 5093a52db8e5e132eee338e748031f35 { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor' } -C3N-01763.RNA-Seq.genomic.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 6d296048-28bc-48b7-8b9e-92a79b2ee0a4.rna_seq.genomic.gdc_realn.bam 8585613854 BAM genomic harmonized CPTAC3 3a0141a3-aae4-418e-8665-d8ce290338cb 8e8bd638db84134c59ff98c9f32f41d0 { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor' } -C3N-01763.RNA-Seq.genomic.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 973b5356-2a21-4fda-9e96-9ba6105e2387.rna_seq.genomic.gdc_realn.bam 7427778487 BAM genomic harmonized CPTAC3 c48f8df7-d51e-44f1-b20d-ddfdd26ac26c 34dc88c133fb6ec5c05a88fea8407281 { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor' } -C3N-01763.RNA-Seq.R1_L006.T C3N-01763 UCEC RNA-Seq tumor CPT0116850047 190501_UNC31-K00269_0213_BH5JYFBBXY_TAAGTGGT-CTTAAGCC_S23_L006_R1_001.fastq.gz 4167536358 FASTQ R1_L006 unaligned CPTAC3 cc569ee8-69b0-458c-95b1-b339524714ef a6db3880f3b8b398e1155341097f8ac5 { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor' } -C3N-01763.RNA-Seq.R1_L007.T C3N-01763 UCEC RNA-Seq tumor CPT0116860009 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTGAT_S25_L007_R1_001.fastq.gz 3572864062 FASTQ R1_L007 unaligned CPTAC3 0ec582f3-4c3e-4cd5-af45-8a041b11e71a f0d0d0f5d0cf34dbde05dd85fdd6a5a6 { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor' } -C3N-01763.RNA-Seq.R2_L006.T C3N-01763 UCEC RNA-Seq tumor CPT0116850047 190501_UNC31-K00269_0213_BH5JYFBBXY_TAAGTGGT-CTTAAGCC_S23_L006_R2_001.fastq.gz 4639896452 FASTQ R2_L006 unaligned CPTAC3 d9683cdb-83d8-483a-b5a1-281e8894afe3 12befb0d38cfebf27fd8fe24a1e63052 { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor' } -C3N-01763.RNA-Seq.R2_L007.T C3N-01763 UCEC RNA-Seq tumor CPT0116860009 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTGAT_S25_L007_R2_001.fastq.gz 3710719905 FASTQ R2_L007 unaligned CPTAC3 adbc8553-ce20-401b-be51-9808d7604857 ce760afe71e5fd0db7d478ab3997a489 { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor' } -C3N-01763.RNA-Seq.transcriptome.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 6d296048-28bc-48b7-8b9e-92a79b2ee0a4.rna_seq.transcriptome.gdc_realn.bam 11479606994 BAM transcriptome harmonized CPTAC3 40194d75-afb3-431c-bb88-526f5d8df0ff 2fd8c8ec23d0a1fe69c524e3aa97362a { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor' } -C3N-01763.RNA-Seq.transcriptome.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 973b5356-2a21-4fda-9e96-9ba6105e2387.rna_seq.transcriptome.gdc_realn.bam 9298757399 BAM transcriptome harmonized CPTAC3 915d0f4e-e4b4-43dd-ad20-58417434ad10 f0cbe05f0091b878615ff4f2145b62be { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor' } +C3N-01763.RNA-Seq.chimeric.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 f0b8868e-90e2-4df6-95d1-764d0ac7b637.rna_seq.chimeric.gdc_realn.bam 40971318 BAM chimeric harmonized CPTAC3 9a35a226-f3d1-430f-91e8-589efad3292c 6ca86ae377eab9bd88cd93a25acefb27 { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor' } +C3N-01763.RNA-Seq.chimeric.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 9f3f6760-2677-4351-96e0-3badc7105be5.rna_seq.chimeric.gdc_realn.bam 25286691 BAM chimeric harmonized CPTAC3 a85f8fe4-bd19-48a3-8267-50cce3d744b1 aae6b6fb1dc5c2e4e78d32a2e7e59de0 { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor' } +C3N-01763.RNA-Seq.genomic.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 f0b8868e-90e2-4df6-95d1-764d0ac7b637.rna_seq.genomic.gdc_realn.bam 8586502346 BAM genomic harmonized CPTAC3 cf8c1439-4329-434b-b9ff-a79411dce763 2b4e0c8f4c8098df1c46c26c78cab98a { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor' } +C3N-01763.RNA-Seq.genomic.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 9f3f6760-2677-4351-96e0-3badc7105be5.rna_seq.genomic.gdc_realn.bam 7429096308 BAM genomic harmonized CPTAC3 75f628a0-5b88-4e21-95f4-6002860b8d0a 02c5edc3a59410a767e941ebd976b270 { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor' } +C3N-01763.RNA-Seq.R1_L006.T C3N-01763 UCEC RNA-Seq tumor CPT0116850047 190501_UNC31-K00269_0213_BH5JYFBBXY_TAAGTGGT-CTTAAGCC_S23_L006_R1_001.fastq.gz 4167536358 FASTQ R1_L006 unaligned CPTAC3 cc569ee8-69b0-458c-95b1-b339524714ef a6db3880f3b8b398e1155341097f8ac5 { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01763.RNA-Seq.R1_L007.T C3N-01763 UCEC RNA-Seq tumor CPT0116860009 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTGAT_S25_L007_R1_001.fastq.gz 3572864062 FASTQ R1_L007 unaligned CPTAC3 0ec582f3-4c3e-4cd5-af45-8a041b11e71a f0d0d0f5d0cf34dbde05dd85fdd6a5a6 { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01763.RNA-Seq.R2_L006.T C3N-01763 UCEC RNA-Seq tumor CPT0116850047 190501_UNC31-K00269_0213_BH5JYFBBXY_TAAGTGGT-CTTAAGCC_S23_L006_R2_001.fastq.gz 4639896452 FASTQ R2_L006 unaligned CPTAC3 d9683cdb-83d8-483a-b5a1-281e8894afe3 12befb0d38cfebf27fd8fe24a1e63052 { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01763.RNA-Seq.R2_L007.T C3N-01763 UCEC RNA-Seq tumor CPT0116860009 181207_UNC32-K00270_0136_AH2N7LBBXY_ACTGAT_S25_L007_R2_001.fastq.gz 3710719905 FASTQ R2_L007 unaligned CPTAC3 adbc8553-ce20-401b-be51-9808d7604857 ce760afe71e5fd0db7d478ab3997a489 { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01763.RNA-Seq.transcriptome.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116850047 f0b8868e-90e2-4df6-95d1-764d0ac7b637.rna_seq.transcriptome.gdc_realn.bam 13224328053 BAM transcriptome harmonized CPTAC3 c5220c56-9fb2-4b91-a1b6-db485800a51c f7c9f62044100a7dc17fc2f3f7cbdd25 { 'aliquot_tag': 'ALQ_7e7d2390', 'gdc_sample_type': 'Primary Tumor' } +C3N-01763.RNA-Seq.transcriptome.T.hg38 C3N-01763 UCEC RNA-Seq tumor CPT0116860009 9f3f6760-2677-4351-96e0-3badc7105be5.rna_seq.transcriptome.gdc_realn.bam 10619418595 BAM transcriptome harmonized CPTAC3 56a2059e-5322-4206-9448-24da47ef9e88 9053d769790a0b2cee0d28a4971768a3 { 'aliquot_tag': 'ALQ_ba09b143', 'gdc_sample_type': 'Primary Tumor' } C3N-01763.WGS.N C3N-01763 UCEC WGS blood_normal CPT0116930002 CPT0116930002.WholeGenome.RP-1303.bam 63529229182 BAM aligned CPTAC3 fac5d673-2c84-4a3f-92c3-4389e9fcc042 9055fdc7f62499dd30cf6fe39ba4d296 { 'aliquot_tag': 'ALQ_2e67341e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01763.WGS.N.hg38 C3N-01763 UCEC WGS blood_normal CPT0116930002 a636d8ce-b0db-4f41-8127-626e3651f2ab_wgs_gdc_realn.bam 93453621013 BAM harmonized CPTAC3 ab009282-d788-4df8-9660-a2ef8a077f36 3caf659efd7e62baa8e3d44b95098924 { 'aliquot_tag': 'ALQ_2e67341e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01763.WGS.T C3N-01763 UCEC WGS tumor CPT0116860006 CPT0116860006.WholeGenome.RP-1303.bam 62758190402 BAM aligned CPTAC3 46e5bbe8-c4ef-4b48-846e-ef1d75a1736f fcca37b8610bf4173666858ee2b86922 { 'aliquot_tag': 'ALQ_2ab6acd2', 'gdc_sample_type': 'Primary Tumor' } @@ -27133,13 +29119,16 @@ C3N-01764.MethArray.Green.T C3N-01764 UCEC Methylation Array tumor CPT0181320006 C3N-01764.MethArray.Red.T C3N-01764 UCEC Methylation Array tumor CPT0181320006 203561450006_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 bb387e09-332e-4e39-bec4-6fc72756a388 833ee7a43f5f407f060d3808114046f6 { 'aliquot_tag': 'ALQ_6f19df74', 'gdc_sample_type': 'Primary Tumor' } C3N-01764.miRNA-Seq.T C3N-01764 UCEC miRNA-Seq tumor CPT0181320009 190813_UNC32-K00270_0196_AH5MCWBBXY_ACTTGA_S37_L002_R1_001.unaln.bam 194689135 BAM unaligned CPTAC3 49124834-1a06-417c-b706-0a6f7b7b13db 1eec9e62d70fc01dc3c469d1e843a24f { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor' } C3N-01764.miRNA-Seq.T.hg38 C3N-01764 UCEC miRNA-Seq tumor CPT0181320009 6fec6a9c-4b7e-48e5-8ea3-c592d6d876ce_mirnaseq_gdc_realn.bam 220766183 BAM harmonized CPTAC3 6796c265-1c2f-45c2-92b4-123225e76709 36d37153b7b070c51a6b21676f987a91 { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01764.RNA-Seq.chimeric.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 25182772-fa76-4d4e-82c0-4bb0d207cae8.rna_seq.chimeric.gdc_realn.bam 36744402 BAM chimeric harmonized CPTAC3 f43c2544-917c-451c-8f8f-ec13a9f708be 1221b2e50e8114fcc6ce347aa622871c { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01764.RNA-Seq.genomic.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 25182772-fa76-4d4e-82c0-4bb0d207cae8.rna_seq.genomic.gdc_realn.bam 8372937678 BAM genomic harmonized CPTAC3 565cb358-1c2f-450f-adad-9aa4bcc6e60c 0f4940e4b2ec2b38e7662cc955820845 { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01764.RNA-Seq.R1_L001.T C3N-01764 UCEC RNA-Seq tumor CPT0181320009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATGGCATG-AAGGTACC_S2_L001_R1_001.fastq.gz 4121287607 FASTQ R1_L001 unaligned CPTAC3 15fe01a9-90bd-4b66-932a-1a21f1b3becf 18eac54ff0f023df94e6eb55fec54c22 { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01764.RNA-Seq.R1_.T C3N-01764 UCEC RNA-Seq tumor CPT0351660001 20210729_P3_G1_WB7988-Plate3_S73_R1_001.fastq.gz 4474524968 FASTQ R1_ unaligned CPTAC3 086b8c68-a3c9-4af5-ac76-2b7ba7995bcc e0d77f690e5c1d25ec3feb665ece314f { 'aliquot_tag': 'ALQ_e1c340f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01764.RNA-Seq.R2_L001.T C3N-01764 UCEC RNA-Seq tumor CPT0181320009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATGGCATG-AAGGTACC_S2_L001_R2_001.fastq.gz 4300105222 FASTQ R2_L001 unaligned CPTAC3 ab5775a0-83ef-4633-9e63-137cb9a40533 14750d22e4ea88d4d82f7d804dd77b70 { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor' } -C3N-01764.RNA-Seq.R2_.T C3N-01764 UCEC RNA-Seq tumor CPT0351660001 20210729_P3_G1_WB7988-Plate3_S73_R2_001.fastq.gz 4633509902 FASTQ R2_ unaligned CPTAC3 c840f84d-dd0c-4ec0-b5fe-5706c6452139 843ad5f34819b5b73478bedd32d5457d { 'aliquot_tag': 'ALQ_e1c340f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01764.RNA-Seq.transcriptome.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 25182772-fa76-4d4e-82c0-4bb0d207cae8.rna_seq.transcriptome.gdc_realn.bam 8805036938 BAM transcriptome harmonized CPTAC3 076900ed-7f74-40c1-8dfb-5151a5738807 1cfe8463ccaba04e314fd2b5d03ff953 { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01764.RNA-Seq.chimeric.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 9cd0b35b-45d6-4284-ad04-b0d56806068a.rna_seq.chimeric.gdc_realn.bam 36736805 BAM chimeric harmonized CPTAC3 80ce3c1b-441d-4a5e-84a5-193d476c3a56 d5f4841b6d10a475ae5c98dae646f2d8 { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01764.RNA-Seq.chimeric.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0351660001 8be1ecda-b7c5-4ce7-b537-cc480c8ea5be.rna_seq.chimeric.gdc_realn.bam 145889099 BAM chimeric harmonized CPTAC3 e6af529e-908e-453e-ae4e-5a26d30b5984 38fdc5950df869fc32f8689e366bd804 { 'aliquot_tag': 'ALQ_e1c340f3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01764.RNA-Seq.genomic.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 9cd0b35b-45d6-4284-ad04-b0d56806068a.rna_seq.genomic.gdc_realn.bam 8374030254 BAM genomic harmonized CPTAC3 08807c5f-f25c-4ae9-97d9-d567649b8a3e 72bd10eb4adebbe1f2ecf7761379c10d { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01764.RNA-Seq.genomic.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0351660001 8be1ecda-b7c5-4ce7-b537-cc480c8ea5be.rna_seq.genomic.gdc_realn.bam 6608679097 BAM genomic harmonized CPTAC3 26492594-d827-4768-adb4-7bb8ffaa0610 1e3a8f39a01e8d5dcf47ca7b2f847cd5 { 'aliquot_tag': 'ALQ_e1c340f3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01764.RNA-Seq.R1_L001.T C3N-01764 UCEC RNA-Seq tumor CPT0181320009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATGGCATG-AAGGTACC_S2_L001_R1_001.fastq.gz 4121287607 FASTQ R1_L001 unaligned CPTAC3 15fe01a9-90bd-4b66-932a-1a21f1b3becf 18eac54ff0f023df94e6eb55fec54c22 { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01764.RNA-Seq.R2_L001.T C3N-01764 UCEC RNA-Seq tumor CPT0181320009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATGGCATG-AAGGTACC_S2_L001_R2_001.fastq.gz 4300105222 FASTQ R2_L001 unaligned CPTAC3 ab5775a0-83ef-4633-9e63-137cb9a40533 14750d22e4ea88d4d82f7d804dd77b70 { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01764.RNA-Seq.T C3N-01764 UCEC RNA-Seq tumor CPT0351660001 20210729_P3_G1_WB7988-Plate3_S73_R1_001.fastq.gz 4474524968 FASTQ unaligned CPTAC3 086b8c68-a3c9-4af5-ac76-2b7ba7995bcc e0d77f690e5c1d25ec3feb665ece314f +C3N-01764.RNA-Seq.T C3N-01764 UCEC RNA-Seq tumor CPT0351660001 20210729_P3_G1_WB7988-Plate3_S73_R2_001.fastq.gz 4633509902 FASTQ unaligned CPTAC3 c840f84d-dd0c-4ec0-b5fe-5706c6452139 843ad5f34819b5b73478bedd32d5457d +C3N-01764.RNA-Seq.transcriptome.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0181320009 9cd0b35b-45d6-4284-ad04-b0d56806068a.rna_seq.transcriptome.gdc_realn.bam 10133659235 BAM transcriptome harmonized CPTAC3 a9bf92b2-2d60-4cb0-b8c3-cb5333fba839 d4628a1443ad0a6c5a931b1e0180e963 { 'aliquot_tag': 'ALQ_ffa6c2e5', 'gdc_sample_type': 'Primary Tumor' } +C3N-01764.RNA-Seq.transcriptome.T.hg38 C3N-01764 UCEC RNA-Seq tumor CPT0351660001 8be1ecda-b7c5-4ce7-b537-cc480c8ea5be.rna_seq.transcriptome.gdc_realn.bam 3292340840 BAM transcriptome harmonized CPTAC3 d15d2caf-aead-49e8-aa63-63389a871dd5 a2839877836de9f5a151740a670a8bdc { 'aliquot_tag': 'ALQ_e1c340f3', 'gdc_sample_type': 'Primary Tumor' } C3N-01764.WGS.N C3N-01764 UCEC WGS blood_normal CPT0181420002 CPT0181420002.WholeGenome.RP-1303.bam 76306043227 BAM aligned CPTAC3 f1aafd55-375c-4e1a-bbf5-1764a83d5160 8438106dea706da81a56d1aa5c083e46 { 'aliquot_tag': 'ALQ_75712bd5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01764.WGS.N.hg38 C3N-01764 UCEC WGS blood_normal CPT0181420002 8e1413b9-4510-41ba-aebc-7acdf3bc86f0_wgs_gdc_realn.bam 110211404774 BAM harmonized CPTAC3 f722819c-c714-400c-a6da-b7e25e52f829 87844d3bfa92705f305c7c50047dfd02 { 'aliquot_tag': 'ALQ_75712bd5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01764.WGS.T C3N-01764 UCEC WGS tumor CPT0181320006 CPT0181320006.WholeGenome.RP-1303.bam 75986964008 BAM aligned CPTAC3 f6bf80a8-7c87-4dfd-b7a0-f13c6c415ded 8f27ccdd073ca134997eb9dcd7fdc7fc { 'aliquot_tag': 'ALQ_6f19df74', 'gdc_sample_type': 'Primary Tumor' } @@ -27154,18 +29143,21 @@ C3N-01765.miRNA-Seq.A C3N-01765 UCEC miRNA-Seq tissue_normal CPT0116960009 19013 C3N-01765.miRNA-Seq.A.hg38 C3N-01765 UCEC miRNA-Seq tissue_normal CPT0116960009 365b23f0-c713-4e20-8a80-8af6ee4a4601_mirnaseq_gdc_realn.bam 317472192 BAM harmonized CPTAC3 be06190b-13da-40b3-b932-ab379fab6401 5cf8964340371303f5675f63eaf5ff4c { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01765.miRNA-Seq.T C3N-01765 UCEC miRNA-Seq tumor CPT0116940009 190108_UNC31-K00269_0176_AHYGLVBBXX_TCGGCA_S48_L003_R1_001.unaln.bam 211345881 BAM unaligned CPTAC3 cf99070a-2020-4fb1-ae9e-c729767b4b48 d07dedbe6bf8c7ca82b235f0d8473e1e { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor' } C3N-01765.miRNA-Seq.T.hg38 C3N-01765 UCEC miRNA-Seq tumor CPT0116940009 78a371fe-3d52-463f-a356-0f974afe9ae4_mirnaseq_gdc_realn.bam 236212983 BAM harmonized CPTAC3 01b09e5e-4ecc-4761-8c14-19523608d436 361ea16504564d8c95af87e1d9ff93f0 { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor' } -C3N-01765.RNA-Seq.chimeric.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 8719ccb2-2cd0-41d2-9d3d-eb175f990e3f.rna_seq.chimeric.gdc_realn.bam 36003795 BAM chimeric harmonized CPTAC3 cd2a4bce-d52a-4cf3-bba7-0288a52207ec ecd36d35287377dd9a54111f7fe0b31e { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01765.RNA-Seq.chimeric.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 81d68f51-9b6a-4f93-b78a-84bc94a76784.rna_seq.chimeric.gdc_realn.bam 26443238 BAM chimeric harmonized CPTAC3 3736a9b2-cae1-41de-bc02-c6fa21a81ff8 3c79f483f2ab3c9408f73c1a7719f6bc { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor' } -C3N-01765.RNA-Seq.genomic.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 8719ccb2-2cd0-41d2-9d3d-eb175f990e3f.rna_seq.genomic.gdc_realn.bam 9471639462 BAM genomic harmonized CPTAC3 bf08f259-4679-4958-ad5c-588d26259eec 0f444bd28cf86ed992949f9e77182abe { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01765.RNA-Seq.genomic.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 81d68f51-9b6a-4f93-b78a-84bc94a76784.rna_seq.genomic.gdc_realn.bam 7746771480 BAM genomic harmonized CPTAC3 f72a6f97-436a-4afc-9e06-4f92356fcf5b 9f8f80b7af03e8e99e0173c053857194 { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor' } -C3N-01765.RNA-Seq.R1_L001.A C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L001_R1_001.fastq.gz 3617796962 FASTQ R1_L001 unaligned CPTAC3 8b854d30-5075-414f-b02f-8d68ede6807d 28d0f0f54875d0367f6bfcaf97dee662 { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01765.RNA-Seq.R1_L007.T C3N-01765 UCEC RNA-Seq tumor CPT0116940009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L007_R1_001.fastq.gz 3478808141 FASTQ R1_L007 unaligned CPTAC3 bb95410d-8d96-4e89-87f0-3b99e2df0819 356c8716f387271450d1f30ad14e62e5 { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor' } -C3N-01765.RNA-Seq.R1_.T C3N-01765 UCEC RNA-Seq tumor CPT0351710001 20210723_P2_D3_WB7988-plate2_S39_R1_001.fastq.gz 4691831153 FASTQ R1_ unaligned CPTAC3 b5bc81e8-c6f7-48f6-9569-89cd460e5c2f c2955f19be845b76449f9ba44b4cc426 { 'aliquot_tag': 'ALQ_98bf4f46', 'gdc_sample_type': 'Primary Tumor' } -C3N-01765.RNA-Seq.R2_L001.A C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L001_R2_001.fastq.gz 4064303340 FASTQ R2_L001 unaligned CPTAC3 09e26c8f-83b4-4d54-95ed-e7d58df8fc7b aed81ac4969395e352aa00ff72c47549 { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01765.RNA-Seq.R2_L007.T C3N-01765 UCEC RNA-Seq tumor CPT0116940009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L007_R2_001.fastq.gz 3634000136 FASTQ R2_L007 unaligned CPTAC3 09364581-4838-4c36-82b6-22479bab4426 8f992be3debb07eff5519ff20cdc4879 { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor' } -C3N-01765.RNA-Seq.R2_.T C3N-01765 UCEC RNA-Seq tumor CPT0351710001 20210723_P2_D3_WB7988-plate2_S39_R2_001.fastq.gz 4782780001 FASTQ R2_ unaligned CPTAC3 f6e5bd59-83f4-4893-954b-74a02ddafc3b 53fbbafc379615f42222115c0bc2ef6d { 'aliquot_tag': 'ALQ_98bf4f46', 'gdc_sample_type': 'Primary Tumor' } -C3N-01765.RNA-Seq.transcriptome.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 8719ccb2-2cd0-41d2-9d3d-eb175f990e3f.rna_seq.transcriptome.gdc_realn.bam 9182047558 BAM transcriptome harmonized CPTAC3 8240fd50-f41b-4e7a-b25f-0020f98446cd 4cbeb3e2e6b17dca8346cb51b19e6d55 { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01765.RNA-Seq.transcriptome.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 81d68f51-9b6a-4f93-b78a-84bc94a76784.rna_seq.transcriptome.gdc_realn.bam 7844307553 BAM transcriptome harmonized CPTAC3 1256d58e-54cb-4d44-bb8a-47c16ef2493a 8342645d2250f9696dae2f2f7464be91 { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor' } +C3N-01765.RNA-Seq.chimeric.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 775e832d-3044-4c99-93dc-70d96c00bce5.rna_seq.chimeric.gdc_realn.bam 35980714 BAM chimeric harmonized CPTAC3 6bfa08c9-cffe-48ac-b00b-1aebbe85a8a5 f43c31f5a7c91a4351369012950eae4e { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01765.RNA-Seq.chimeric.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 cf11fd51-3d0e-46e7-9ecb-42ce5a1ec028.rna_seq.chimeric.gdc_realn.bam 26425887 BAM chimeric harmonized CPTAC3 5fe81484-3b91-4484-8852-2f68aedd4df6 fad0e468df620faef75d7d5b8c035f5b { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor' } +C3N-01765.RNA-Seq.chimeric.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0351710001 4c9c8928-3d7d-49b4-aeda-21728620eda8.rna_seq.chimeric.gdc_realn.bam 141564140 BAM chimeric harmonized CPTAC3 5c5cebdb-d230-4e48-bcc0-51ef3e944f97 80da45658d9c28c132370b90281e3c64 { 'aliquot_tag': 'ALQ_98bf4f46', 'gdc_sample_type': 'Primary Tumor' } +C3N-01765.RNA-Seq.genomic.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 775e832d-3044-4c99-93dc-70d96c00bce5.rna_seq.genomic.gdc_realn.bam 9473449150 BAM genomic harmonized CPTAC3 1caf09e8-c8fd-4918-b5c4-6513d2e0b356 11af2eadefa20d72e2d31d10ea6a693e { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01765.RNA-Seq.genomic.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 cf11fd51-3d0e-46e7-9ecb-42ce5a1ec028.rna_seq.genomic.gdc_realn.bam 7748532240 BAM genomic harmonized CPTAC3 37a56f26-2034-4a05-9d5f-b921ce6660e9 1b4b91746162ed530c1637083eeb05f3 { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor' } +C3N-01765.RNA-Seq.genomic.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0351710001 4c9c8928-3d7d-49b4-aeda-21728620eda8.rna_seq.genomic.gdc_realn.bam 7633547983 BAM genomic harmonized CPTAC3 59e97014-3355-443b-8989-d1f05b1ad6d7 d74df7b676b638921842c70f4e2a9783 { 'aliquot_tag': 'ALQ_98bf4f46', 'gdc_sample_type': 'Primary Tumor' } +C3N-01765.RNA-Seq.R1_L001.A C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L001_R1_001.fastq.gz 3617796962 FASTQ R1_L001 unaligned CPTAC3 8b854d30-5075-414f-b02f-8d68ede6807d 28d0f0f54875d0367f6bfcaf97dee662 { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01765.RNA-Seq.R1_L007.T C3N-01765 UCEC RNA-Seq tumor CPT0116940009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L007_R1_001.fastq.gz 3478808141 FASTQ R1_L007 unaligned CPTAC3 bb95410d-8d96-4e89-87f0-3b99e2df0819 356c8716f387271450d1f30ad14e62e5 { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01765.RNA-Seq.R2_L001.A C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 190201_UNC31-K00269_0190_BH3LFKBBXY_GAGTGG_S2_L001_R2_001.fastq.gz 4064303340 FASTQ R2_L001 unaligned CPTAC3 09e26c8f-83b4-4d54-95ed-e7d58df8fc7b aed81ac4969395e352aa00ff72c47549 { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01765.RNA-Seq.R2_L007.T C3N-01765 UCEC RNA-Seq tumor CPT0116940009 181207_UNC32-K00270_0136_AH2N7LBBXY_ATTCCT_S20_L007_R2_001.fastq.gz 3634000136 FASTQ R2_L007 unaligned CPTAC3 09364581-4838-4c36-82b6-22479bab4426 8f992be3debb07eff5519ff20cdc4879 { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01765.RNA-Seq.T C3N-01765 UCEC RNA-Seq tumor CPT0351710001 20210723_P2_D3_WB7988-plate2_S39_R1_001.fastq.gz 4691831153 FASTQ unaligned CPTAC3 b5bc81e8-c6f7-48f6-9569-89cd460e5c2f c2955f19be845b76449f9ba44b4cc426 +C3N-01765.RNA-Seq.T C3N-01765 UCEC RNA-Seq tumor CPT0351710001 20210723_P2_D3_WB7988-plate2_S39_R2_001.fastq.gz 4782780001 FASTQ unaligned CPTAC3 f6e5bd59-83f4-4893-954b-74a02ddafc3b 53fbbafc379615f42222115c0bc2ef6d +C3N-01765.RNA-Seq.transcriptome.A.hg38 C3N-01765 UCEC RNA-Seq tissue_normal CPT0116960009 775e832d-3044-4c99-93dc-70d96c00bce5.rna_seq.transcriptome.gdc_realn.bam 10433711967 BAM transcriptome harmonized CPTAC3 67f6cd4f-0703-43be-b78d-62abae4a5f6c 0da38e27262154d744464936a7f284a8 { 'aliquot_tag': 'ALQ_715562e6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01765.RNA-Seq.transcriptome.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0116940009 cf11fd51-3d0e-46e7-9ecb-42ce5a1ec028.rna_seq.transcriptome.gdc_realn.bam 8924546081 BAM transcriptome harmonized CPTAC3 feca2ba7-371c-41a0-9a2e-bf34b52c9298 fd1e9048ad033c95592fd2bd596fdad1 { 'aliquot_tag': 'ALQ_b953186', 'gdc_sample_type': 'Primary Tumor' } +C3N-01765.RNA-Seq.transcriptome.T.hg38 C3N-01765 UCEC RNA-Seq tumor CPT0351710001 4c9c8928-3d7d-49b4-aeda-21728620eda8.rna_seq.transcriptome.gdc_realn.bam 3592066261 BAM transcriptome harmonized CPTAC3 2acd8501-e18a-454d-9170-977f28b22809 08e4685c2738e73de88ad6418055ae22 { 'aliquot_tag': 'ALQ_98bf4f46', 'gdc_sample_type': 'Primary Tumor' } C3N-01765.WGS.A C3N-01765 UCEC WGS tissue_normal CPT0116960006 CPT0116960006.WholeGenome.RP-1303.bam 60046690954 BAM aligned CPTAC3 4ff01569-6fd4-4aec-aa5c-4323a5b0dca8 ff85d25a92885be0514f2cbb0e8dbf1f { 'aliquot_tag': 'ALQ_e1ea7f77', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01765.WGS.A.hg38 C3N-01765 UCEC WGS tissue_normal CPT0116960006 111a9ccd-261a-45b3-a0de-e7fb02aba7ad_wgs_gdc_realn.bam 89064072917 BAM harmonized CPTAC3 3d1c9bd4-190c-403e-9feb-64c1d9180224 d6194b448884dad3349c49216203aef8 { 'aliquot_tag': 'ALQ_e1ea7f77', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01765.WGS.N C3N-01765 UCEC WGS blood_normal CPT0117000002 CPT0117000002.WholeGenome.RP-1303.bam 62631238284 BAM aligned CPTAC3 5e839f72-556e-44e3-b3c2-2cafde73fa32 bd457f2578be2dee2c936e72bf563718 { 'aliquot_tag': 'ALQ_e8bf14b2', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27182,13 +29174,16 @@ C3N-01766.MethArray.Green.T C3N-01766 UCEC Methylation Array tumor CPT0226810006 C3N-01766.MethArray.Red.T C3N-01766 UCEC Methylation Array tumor CPT0226810006 203561620077_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 362dbf69-f909-44f5-8935-c5039744a0fb 7b3eba689d31a35d22d4ccc2c88731a3 { 'aliquot_tag': 'ALQ_2f944be4', 'gdc_sample_type': 'Primary Tumor' } C3N-01766.miRNA-Seq.T C3N-01766 UCEC miRNA-Seq tumor CPT0226810009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGGCG_S33_L004_R1_001.unaln.bam 237325732 BAM unaligned CPTAC3 ae33088d-1e83-493e-b0f7-9ee8cb64a2db 0da529b04085d5d5f4281dd567a48c65 { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor' } C3N-01766.miRNA-Seq.T.hg38 C3N-01766 UCEC miRNA-Seq tumor CPT0226810009 5b88a80c-5744-4eb4-bdfb-9a6b995e8bd7_mirnaseq_gdc_realn.bam 273896866 BAM harmonized CPTAC3 f33717b8-b9f7-47ca-ae53-5d19026f6cbb d3e4e140d83b9152eacc57e31936c1a7 { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor' } -C3N-01766.RNA-Seq.chimeric.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 149eb1fa-a036-4228-b063-2739b4bf89e3.rna_seq.chimeric.gdc_realn.bam 43973847 BAM chimeric harmonized CPTAC3 7f0c0f5f-d550-4e95-b4ef-96283d145d64 91a1ba96040a9200879f299f83ed81c0 { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor' } -C3N-01766.RNA-Seq.genomic.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 149eb1fa-a036-4228-b063-2739b4bf89e3.rna_seq.genomic.gdc_realn.bam 9323341336 BAM genomic harmonized CPTAC3 6846dad8-9568-4873-bfb3-df803809d09f f80b9af06243e0561e3d9fd8f834675c { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor' } -C3N-01766.RNA-Seq.R1_L002.T C3N-01766 UCEC RNA-Seq tumor CPT0226810009 190523_UNC32-K00270_0176_BH7CW7BBXY_AACTGTAG-ACGCCGCA_S5_L002_R1_001.fastq.gz 4432717655 FASTQ R1_L002 unaligned CPTAC3 96ea3cfc-9e24-4903-8b33-6691b9ec934d 78af198e3b5de5ad51053b9c672ddd91 { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor' } -C3N-01766.RNA-Seq.R1_.T C3N-01766 UCEC RNA-Seq tumor CPT0351740001 20210729_P3_B6_WB7988-Plate3_S18_R1_001.fastq.gz 4762228461 FASTQ R1_ unaligned CPTAC3 9a32df43-fd9d-4be5-a69a-4f959fd990d0 53c5e766ba86e64556263a22210cea61 { 'aliquot_tag': 'ALQ_505fc036', 'gdc_sample_type': 'Primary Tumor' } -C3N-01766.RNA-Seq.R2_L002.T C3N-01766 UCEC RNA-Seq tumor CPT0226810009 190523_UNC32-K00270_0176_BH7CW7BBXY_AACTGTAG-ACGCCGCA_S5_L002_R2_001.fastq.gz 5034965860 FASTQ R2_L002 unaligned CPTAC3 d73c774d-aeb6-4a5f-a630-b3e85afa4ea0 0e40c2daeea4f559288819fd25809e34 { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor' } -C3N-01766.RNA-Seq.R2_.T C3N-01766 UCEC RNA-Seq tumor CPT0351740001 20210729_P3_B6_WB7988-Plate3_S18_R2_001.fastq.gz 4920715927 FASTQ R2_ unaligned CPTAC3 e7e74d9a-b9a8-4753-84e1-f2bd2e3a0de7 8e15a18c69e004de4c36768573b2a4e9 { 'aliquot_tag': 'ALQ_505fc036', 'gdc_sample_type': 'Primary Tumor' } -C3N-01766.RNA-Seq.transcriptome.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 149eb1fa-a036-4228-b063-2739b4bf89e3.rna_seq.transcriptome.gdc_realn.bam 11514315865 BAM transcriptome harmonized CPTAC3 675e18a0-0d65-42da-971c-a51c895f714b fb380498c6a8364668246bc4baf6d2eb { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor' } +C3N-01766.RNA-Seq.chimeric.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 b189b569-016f-44dd-a3b2-35bb801fbe4b.rna_seq.chimeric.gdc_realn.bam 43968453 BAM chimeric harmonized CPTAC3 0417e391-932d-47fc-91fe-11b382ec56cc 86a32c47caad72ba789debc8bd2349ba { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor' } +C3N-01766.RNA-Seq.chimeric.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0351740001 c819f716-3522-4c05-88e5-5a3e10e3c013.rna_seq.chimeric.gdc_realn.bam 196626309 BAM chimeric harmonized CPTAC3 1af0c05d-d104-4a37-a89a-d2547a9e5b15 e5eba0e641bfa20280dab1b1ec4aa482 { 'aliquot_tag': 'ALQ_505fc036', 'gdc_sample_type': 'Primary Tumor' } +C3N-01766.RNA-Seq.genomic.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 b189b569-016f-44dd-a3b2-35bb801fbe4b.rna_seq.genomic.gdc_realn.bam 9324855723 BAM genomic harmonized CPTAC3 2caedd36-ba6d-4445-9085-5d668e2d3ef6 8447721e5d936b4f56c0161a58cb2b7f { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor' } +C3N-01766.RNA-Seq.genomic.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0351740001 c819f716-3522-4c05-88e5-5a3e10e3c013.rna_seq.genomic.gdc_realn.bam 8598218707 BAM genomic harmonized CPTAC3 bd3c6ffc-35ee-42a4-b15a-53e75b8a969b 8eae8f401b11363d8187699282d2cc6b { 'aliquot_tag': 'ALQ_505fc036', 'gdc_sample_type': 'Primary Tumor' } +C3N-01766.RNA-Seq.R1_L002.T C3N-01766 UCEC RNA-Seq tumor CPT0226810009 190523_UNC32-K00270_0176_BH7CW7BBXY_AACTGTAG-ACGCCGCA_S5_L002_R1_001.fastq.gz 4432717655 FASTQ R1_L002 unaligned CPTAC3 96ea3cfc-9e24-4903-8b33-6691b9ec934d 78af198e3b5de5ad51053b9c672ddd91 { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01766.RNA-Seq.R2_L002.T C3N-01766 UCEC RNA-Seq tumor CPT0226810009 190523_UNC32-K00270_0176_BH7CW7BBXY_AACTGTAG-ACGCCGCA_S5_L002_R2_001.fastq.gz 5034965860 FASTQ R2_L002 unaligned CPTAC3 d73c774d-aeb6-4a5f-a630-b3e85afa4ea0 0e40c2daeea4f559288819fd25809e34 { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01766.RNA-Seq.T C3N-01766 UCEC RNA-Seq tumor CPT0351740001 20210729_P3_B6_WB7988-Plate3_S18_R1_001.fastq.gz 4762228461 FASTQ unaligned CPTAC3 9a32df43-fd9d-4be5-a69a-4f959fd990d0 53c5e766ba86e64556263a22210cea61 +C3N-01766.RNA-Seq.T C3N-01766 UCEC RNA-Seq tumor CPT0351740001 20210729_P3_B6_WB7988-Plate3_S18_R2_001.fastq.gz 4920715927 FASTQ unaligned CPTAC3 e7e74d9a-b9a8-4753-84e1-f2bd2e3a0de7 8e15a18c69e004de4c36768573b2a4e9 +C3N-01766.RNA-Seq.transcriptome.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0226810009 b189b569-016f-44dd-a3b2-35bb801fbe4b.rna_seq.transcriptome.gdc_realn.bam 13325853441 BAM transcriptome harmonized CPTAC3 707adb18-7519-48cf-baec-945a6768213d 18b47a2d3631b32070dee097aed5d68b { 'aliquot_tag': 'ALQ_bf2b5675', 'gdc_sample_type': 'Primary Tumor' } +C3N-01766.RNA-Seq.transcriptome.T.hg38 C3N-01766 UCEC RNA-Seq tumor CPT0351740001 c819f716-3522-4c05-88e5-5a3e10e3c013.rna_seq.transcriptome.gdc_realn.bam 3576817985 BAM transcriptome harmonized CPTAC3 2f6f34c4-93dc-4475-9d12-9a9650042ec4 fba52e75b213a8bf29b0fba61185528e { 'aliquot_tag': 'ALQ_505fc036', 'gdc_sample_type': 'Primary Tumor' } C3N-01766.WGS.N C3N-01766 UCEC WGS blood_normal CPT0226850002 CPT0226850002.WholeGenome.RP-1303.bam 82934955171 BAM aligned CPTAC3 394ea969-87e2-491d-9dce-5d4c9c8f71d3 e7420d84b3a9f06c5bff0e7ff1958477 { 'aliquot_tag': 'ALQ_dd79293d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01766.WGS.N.hg38 C3N-01766 UCEC WGS blood_normal CPT0226850002 6f28b44a-bb64-4651-947b-2e7eafd00ab3_wgs_gdc_realn.bam 121613866429 BAM harmonized CPTAC3 c5b9f037-f471-4978-8eff-814cc98f3ea1 416b91f8caf0d3d836b3a7219ae68125 { 'aliquot_tag': 'ALQ_dd79293d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01766.WGS.T C3N-01766 UCEC WGS tumor CPT0226810006 CPT0226810006.WholeGenome.RP-1303.bam 77469750236 BAM aligned CPTAC3 b7838dbc-ed59-4c80-9b80-4e0207ec9e05 82438ce98b49833316d7701f1eae9ddc { 'aliquot_tag': 'ALQ_2f944be4', 'gdc_sample_type': 'Primary Tumor' } @@ -27205,16 +29200,16 @@ C3N-01767.miRNA-Seq.A C3N-01767 LSCC miRNA-Seq tissue_normal CPT0321470009 20051 C3N-01767.miRNA-Seq.A.hg38 C3N-01767 LSCC miRNA-Seq tissue_normal CPT0321470009 e360e895-68bd-4ef5-9780-3b07527fc228_mirnaseq_gdc_realn.bam 313238192 BAM harmonized CPTAC3 a753b8ab-c463-41b2-a0fa-3a8a7123294c 1ab9aca17f50929d4978c04adb24fc05 { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01767.miRNA-Seq.T C3N-01767 LSCC miRNA-Seq tumor CPT0321460009 200224_UNC31-K00269_0267_AHC722BBXY_CTATAC_S39_L007_R1_001.unaln.bam 258536181 BAM unaligned CPTAC3 43f32783-e121-4131-8b10-f820dc9fd5c0 ab757d90de6f2a8416c26fa518a1a7f2 { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor' } C3N-01767.miRNA-Seq.T.hg38 C3N-01767 LSCC miRNA-Seq tumor CPT0321460009 f0af4d65-0e5f-4c86-a4e3-c4c5c44c421a_mirnaseq_gdc_realn.bam 284784513 BAM harmonized CPTAC3 ecd1b0b5-cc41-48d6-9c10-f23561dd527e 4e55bcf89f2fd8c9fc5394589c11c782 { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01767.RNA-Seq.chimeric.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 4ce00477-7912-4065-89aa-68c53271d4a7.rna_seq.chimeric.gdc_realn.bam 33961027 BAM chimeric harmonized CPTAC3 7c128ec8-2bdd-4373-b632-9293458eeb9e eea2a3988b3a6447670cd99be10d0ac3 { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01767.RNA-Seq.chimeric.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 2681d914-43ff-4c99-9932-3d7cafceeb6c.rna_seq.chimeric.gdc_realn.bam 31509706 BAM chimeric harmonized CPTAC3 a9e03b7d-2bad-49a3-9a59-2d06ea99b8cd 36bc77a4fe732684f91da892d68995a2 { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01767.RNA-Seq.genomic.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 4ce00477-7912-4065-89aa-68c53271d4a7.rna_seq.genomic.gdc_realn.bam 8914815781 BAM genomic harmonized CPTAC3 7249d2dd-0387-4770-b913-48391cd69491 0807c308199dc7ad4a1f009b4e55b4a6 { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01767.RNA-Seq.genomic.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 2681d914-43ff-4c99-9932-3d7cafceeb6c.rna_seq.genomic.gdc_realn.bam 7068458264 BAM genomic harmonized CPTAC3 148d7540-23b3-4c88-8d04-1fab277b7e3a f1fdd0f44b8004febaf65829f764b352 { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01767.RNA-Seq.R1_L002.T C3N-01767 LSCC RNA-Seq tumor CPT0321460009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R1_001.fastq.gz 3420470899 FASTQ R1_L002 unaligned CPTAC3 8e79de30-7b3c-4716-b4f2-7eca97352547 64abf5b9368846b4191203bb6617d998 { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01767.RNA-Seq.R1_L003.A C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 4084108636 FASTQ R1_L003 unaligned CPTAC3 649a1980-a6d2-4dd1-b29b-9d8943d41ace a756295953018fad461666f270017c24 { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01767.RNA-Seq.R2_L002.T C3N-01767 LSCC RNA-Seq tumor CPT0321460009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R2_001.fastq.gz 3642460227 FASTQ R2_L002 unaligned CPTAC3 042d2e89-2d28-425c-ae7e-dd4dd80bddfb 0f084b9c0e332889b702561a41e8b899 { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01767.RNA-Seq.R2_L003.A C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 4909628844 FASTQ R2_L003 unaligned CPTAC3 866d1256-d6bb-4aa0-b5ea-16a2843410a7 65ebe2c7789838337e16ecb3d3fd7afb { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01767.RNA-Seq.transcriptome.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 4ce00477-7912-4065-89aa-68c53271d4a7.rna_seq.transcriptome.gdc_realn.bam 9184661485 BAM transcriptome harmonized CPTAC3 5ec073fb-21de-48eb-b943-9c93f852c803 6b3f6e0080029dc3d93bd9f7a1a3ea39 { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01767.RNA-Seq.transcriptome.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 2681d914-43ff-4c99-9932-3d7cafceeb6c.rna_seq.transcriptome.gdc_realn.bam 8282672055 BAM transcriptome harmonized CPTAC3 c52f22e3-b791-48ed-a828-3c57c4e22ba6 420075b45b9f916e21557355cb36b59c { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01767.RNA-Seq.chimeric.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 e6f445ca-ec21-4fc8-97e0-4d06f0895ba9.rna_seq.chimeric.gdc_realn.bam 33925985 BAM chimeric harmonized CPTAC3 fa79127d-7b38-462c-a094-ea8ab273ad1b 438d0aecdb9959a71d0de14202c33279 { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01767.RNA-Seq.chimeric.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 60189a71-2391-454c-a185-d528f458e339.rna_seq.chimeric.gdc_realn.bam 31511557 BAM chimeric harmonized CPTAC3 4ec44176-b2b8-4ddf-a863-34046bde3e48 24b7d96de2ff49207920b176c34faa40 { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01767.RNA-Seq.genomic.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 e6f445ca-ec21-4fc8-97e0-4d06f0895ba9.rna_seq.genomic.gdc_realn.bam 8916162768 BAM genomic harmonized CPTAC3 13313071-c774-44c1-851c-4f05df948601 a275bc5537828c60c795e81e90c01832 { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01767.RNA-Seq.genomic.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 60189a71-2391-454c-a185-d528f458e339.rna_seq.genomic.gdc_realn.bam 7070266928 BAM genomic harmonized CPTAC3 b70f7d5d-627f-4b91-a408-fa8a8a3d32ea 2ca5237e584f8cee999ccdcbe83f30cb { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01767.RNA-Seq.R1_L002.T C3N-01767 LSCC RNA-Seq tumor CPT0321460009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R1_001.fastq.gz 3420470899 FASTQ R1_L002 unaligned CPTAC3 8e79de30-7b3c-4716-b4f2-7eca97352547 64abf5b9368846b4191203bb6617d998 { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01767.RNA-Seq.R1_L003.A C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 4084108636 FASTQ R1_L003 unaligned CPTAC3 649a1980-a6d2-4dd1-b29b-9d8943d41ace a756295953018fad461666f270017c24 { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01767.RNA-Seq.R2_L002.T C3N-01767 LSCC RNA-Seq tumor CPT0321460009 200428_UNC32-K00270_0243_AHG3Y3BBXY_TAAGTGGT-CTTAAGCC_S7_L002_R2_001.fastq.gz 3642460227 FASTQ R2_L002 unaligned CPTAC3 042d2e89-2d28-425c-ae7e-dd4dd80bddfb 0f084b9c0e332889b702561a41e8b899 { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01767.RNA-Seq.R2_L003.A C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 200505_UNC32-K00270_0246_BHH5F5BBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 4909628844 FASTQ R2_L003 unaligned CPTAC3 866d1256-d6bb-4aa0-b5ea-16a2843410a7 65ebe2c7789838337e16ecb3d3fd7afb { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-01767.RNA-Seq.transcriptome.A.hg38 C3N-01767 LSCC RNA-Seq tissue_normal CPT0321470009 e6f445ca-ec21-4fc8-97e0-4d06f0895ba9.rna_seq.transcriptome.gdc_realn.bam 10431757555 BAM transcriptome harmonized CPTAC3 4bb9e270-1058-4034-8656-0b8232d9ac21 4e35c0cfc2f900581bedcfb2d32c4cf0 { 'aliquot_tag': 'ALQ_95754963', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01767.RNA-Seq.transcriptome.T.hg38 C3N-01767 LSCC RNA-Seq tumor CPT0321460009 60189a71-2391-454c-a185-d528f458e339.rna_seq.transcriptome.gdc_realn.bam 9277800609 BAM transcriptome harmonized CPTAC3 745b5169-edc5-40bf-b505-a048d4ac489a 0170212fb4e3c7c8767a1855079104d1 { 'aliquot_tag': 'ALQ_a81560d3', 'gdc_sample_type': 'Primary Tumor' } C3N-01767.WGS.N C3N-01767 LSCC WGS blood_normal CPT0321500002 CPT0321500002.WholeGenome.RP-2158.bam 24317652446 BAM aligned CPTAC3 f660ff25-e13c-48d7-acf0-cc6968325f7d 9766f0a94e538c39524668c7eee6ad32 { 'aliquot_tag': 'ALQ_7bdb9f5e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01767.WGS.N.hg38 C3N-01767 LSCC WGS blood_normal CPT0321500002 d776e407-5302-45a0-8132-f5cb9827057b_wgs_gdc_realn.bam 72917295191 BAM harmonized CPTAC3 6014ac1c-0e43-4639-a4da-aa11ee71e8c7 4cef20d16ba33cbfa0120cfe3617969e { 'aliquot_tag': 'ALQ_7bdb9f5e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01767.WGS.T C3N-01767 LSCC WGS tumor CPT0321460006 CPT0321460006.WholeGenome.RP-2158.bam 22854197072 BAM aligned CPTAC3 bc0adb67-11b6-4526-b5c8-64c0e05bf0e9 8137c2a0059101b87aeab5a737569d4e { 'aliquot_tag': 'ALQ_38aa7d42', 'gdc_sample_type': 'Primary Tumor' } @@ -27233,16 +29228,16 @@ C3N-01768.miRNA-Seq.A C3N-01768 LSCC miRNA-Seq tissue_normal CPT0321520010 20032 C3N-01768.miRNA-Seq.A.hg38 C3N-01768 LSCC miRNA-Seq tissue_normal CPT0321520010 c4737c06-9e08-487e-9e38-137ec9218e86_mirnaseq_gdc_realn.bam 204664640 BAM harmonized CPTAC3 ebbe7a21-f275-4170-822f-e9ff333c0133 9a36a20090a25cccfed4c3fe52b71d19 { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01768.miRNA-Seq.T C3N-01768 LSCC miRNA-Seq tumor CPT0321510009 200224_UNC31-K00269_0267_AHC722BBXY_CTCAGA_S40_L007_R1_001.unaln.bam 151075223 BAM unaligned CPTAC3 850ca6cc-a1ed-4bb9-bd94-fc7215eed4e4 13e97484417a5f35c4b6fc467fe195d2 { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor' } C3N-01768.miRNA-Seq.T.hg38 C3N-01768 LSCC miRNA-Seq tumor CPT0321510009 25be4b4d-bfa8-416c-970c-16dd372a22ed_mirnaseq_gdc_realn.bam 170089882 BAM harmonized CPTAC3 c6afc43e-da34-4a31-87c3-92f45bf35687 457ea2afc50a01438493951f210957eb { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor' } -C3N-01768.RNA-Seq.chimeric.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 cf27266a-8fc9-40ad-94d0-17c59d257277.rna_seq.chimeric.gdc_realn.bam 120500171 BAM chimeric harmonized CPTAC3 14f30c2c-e377-4dea-b7e3-65ec57dc48a6 9ff53211bf36302164c736fb179f1334 { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01768.RNA-Seq.chimeric.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 71536860-7f68-4631-ac75-dcad311f7612.rna_seq.chimeric.gdc_realn.bam 37338318 BAM chimeric harmonized CPTAC3 67e9ba3c-3fee-47d7-9f99-5bfc2268cf91 a590277b03a67ddec0e272925031bd46 { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor' } -C3N-01768.RNA-Seq.genomic.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 cf27266a-8fc9-40ad-94d0-17c59d257277.rna_seq.genomic.gdc_realn.bam 7568122859 BAM genomic harmonized CPTAC3 77add33d-54e4-41cc-86c9-af43a9076a13 9c219a33de3ec173047d206d5f30cc91 { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01768.RNA-Seq.genomic.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 71536860-7f68-4631-ac75-dcad311f7612.rna_seq.genomic.gdc_realn.bam 8458447413 BAM genomic harmonized CPTAC3 e1d1f99c-ea52-454a-93aa-35fee360afde 2ef8d8bcf094e76d4e29810dd2d72331 { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor' } -C3N-01768.RNA-Seq.R1_L002.T C3N-01768 LSCC RNA-Seq tumor CPT0321510009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGACAAC-TCCGGATT_S8_L002_R1_001.fastq.gz 4086471599 FASTQ R1_L002 unaligned CPTAC3 7ccc431f-666a-4768-9062-f988c0d3d0fb a32f6ea1e7e76e61205f3d361dc48d7c { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor' } -C3N-01768.RNA-Seq.R1_L005.A C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 200428_UNC31-K00269_0275_AHGCJVBBXY_AACTGTAG-ACGCCGCA_S17_L005_R1_001.fastq.gz 3904926175 FASTQ R1_L005 unaligned CPTAC3 ff49099c-84c9-4b43-95bf-cf49d08c1306 6f98e4ee3927dd6af509fb4dc5576347 { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01768.RNA-Seq.R2_L002.T C3N-01768 LSCC RNA-Seq tumor CPT0321510009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGACAAC-TCCGGATT_S8_L002_R2_001.fastq.gz 4332523665 FASTQ R2_L002 unaligned CPTAC3 80d49158-38aa-452a-aec9-2639d913b7bd 01da92f2ce0431abfff337d2d37bb41a { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor' } -C3N-01768.RNA-Seq.R2_L005.A C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 200428_UNC31-K00269_0275_AHGCJVBBXY_AACTGTAG-ACGCCGCA_S17_L005_R2_001.fastq.gz 4082260248 FASTQ R2_L005 unaligned CPTAC3 658408cb-4d41-4938-860a-475a8db3c829 09986d67ee3293301a20edbc47d302a4 { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01768.RNA-Seq.transcriptome.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 cf27266a-8fc9-40ad-94d0-17c59d257277.rna_seq.transcriptome.gdc_realn.bam 9467314509 BAM transcriptome harmonized CPTAC3 844be415-07ae-4824-8063-bf2e5cfd1c72 8fc50bdc2e7ef9067c9d41eea9107cfd { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01768.RNA-Seq.transcriptome.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 71536860-7f68-4631-ac75-dcad311f7612.rna_seq.transcriptome.gdc_realn.bam 9260919283 BAM transcriptome harmonized CPTAC3 290cf7f2-035b-4f3b-a71c-82d31c1e9a7b 57fc507de5da6f15edf2b4b01ddce949 { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor' } +C3N-01768.RNA-Seq.chimeric.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 1c5321a4-3b33-4787-9393-3c999940284f.rna_seq.chimeric.gdc_realn.bam 120482408 BAM chimeric harmonized CPTAC3 b110980b-23b1-4d8a-b569-24d898cfafa0 c8fd60ab5d8e5ef874ea0ca6b5853e7a { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01768.RNA-Seq.chimeric.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 ab9ea512-ef80-4429-99bf-bbcc10c83f19.rna_seq.chimeric.gdc_realn.bam 37336376 BAM chimeric harmonized CPTAC3 acb17395-3682-45e7-a24b-47bd9269f848 68ca98209ffb24a0c6ef682491570721 { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor' } +C3N-01768.RNA-Seq.genomic.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 1c5321a4-3b33-4787-9393-3c999940284f.rna_seq.genomic.gdc_realn.bam 7569369780 BAM genomic harmonized CPTAC3 80719a2e-d37a-49e8-b5dc-9d3dee64099d 9c4e2f8f96e301b990fc7834fbc23b5d { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01768.RNA-Seq.genomic.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 ab9ea512-ef80-4429-99bf-bbcc10c83f19.rna_seq.genomic.gdc_realn.bam 8461332705 BAM genomic harmonized CPTAC3 f505a6d2-3821-4437-927d-2d17617650e2 9d2a56492a7ace23725e8b1acca31859 { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor' } +C3N-01768.RNA-Seq.R1_L002.T C3N-01768 LSCC RNA-Seq tumor CPT0321510009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGACAAC-TCCGGATT_S8_L002_R1_001.fastq.gz 4086471599 FASTQ R1_L002 unaligned CPTAC3 7ccc431f-666a-4768-9062-f988c0d3d0fb a32f6ea1e7e76e61205f3d361dc48d7c { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01768.RNA-Seq.R1_L005.A C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 200428_UNC31-K00269_0275_AHGCJVBBXY_AACTGTAG-ACGCCGCA_S17_L005_R1_001.fastq.gz 3904926175 FASTQ R1_L005 unaligned CPTAC3 ff49099c-84c9-4b43-95bf-cf49d08c1306 6f98e4ee3927dd6af509fb4dc5576347 { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01768.RNA-Seq.R2_L002.T C3N-01768 LSCC RNA-Seq tumor CPT0321510009 200428_UNC32-K00270_0243_AHG3Y3BBXY_CGGACAAC-TCCGGATT_S8_L002_R2_001.fastq.gz 4332523665 FASTQ R2_L002 unaligned CPTAC3 80d49158-38aa-452a-aec9-2639d913b7bd 01da92f2ce0431abfff337d2d37bb41a { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01768.RNA-Seq.R2_L005.A C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 200428_UNC31-K00269_0275_AHGCJVBBXY_AACTGTAG-ACGCCGCA_S17_L005_R2_001.fastq.gz 4082260248 FASTQ R2_L005 unaligned CPTAC3 658408cb-4d41-4938-860a-475a8db3c829 09986d67ee3293301a20edbc47d302a4 { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01768.RNA-Seq.transcriptome.A.hg38 C3N-01768 LSCC RNA-Seq tissue_normal CPT0321520010 1c5321a4-3b33-4787-9393-3c999940284f.rna_seq.transcriptome.gdc_realn.bam 10787624770 BAM transcriptome harmonized CPTAC3 258e5a2c-b73d-4773-afb2-9d39b38f41fe 24df92ba37b8c8a0478002751e3ab8fd { 'aliquot_tag': 'ALQ_f60e9c53', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01768.RNA-Seq.transcriptome.T.hg38 C3N-01768 LSCC RNA-Seq tumor CPT0321510009 ab9ea512-ef80-4429-99bf-bbcc10c83f19.rna_seq.transcriptome.gdc_realn.bam 10366381465 BAM transcriptome harmonized CPTAC3 033a9686-ce95-4baf-a083-61fcbf318097 5a1ea746fde43864615d140403317c8c { 'aliquot_tag': 'ALQ_d1696f66', 'gdc_sample_type': 'Primary Tumor' } C3N-01768.WGS.N C3N-01768 LSCC WGS blood_normal CPT0321570002 CPT0321570002.WholeGenome.RP-2158.bam 31767677160 BAM aligned CPTAC3 2225e00f-81ea-45c2-bffb-bd2bee203423 3288289cbe0cca73174ffbe7d30ae507 { 'aliquot_tag': 'ALQ_c9fb434e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01768.WGS.N.hg38 C3N-01768 LSCC WGS blood_normal CPT0321570002 886127a1-cd4e-4529-aef1-8f1d1c4c0b45_wgs_gdc_realn.bam 93088951602 BAM harmonized CPTAC3 2891e61e-9bd9-4d13-9464-8f400cf56e48 442d2f7bdd94803a12e7586f655e8117 { 'aliquot_tag': 'ALQ_c9fb434e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01768.WGS.T C3N-01768 LSCC WGS tumor CPT0321510006 CPT0321510006.WholeGenome.RP-2158.bam 24801840088 BAM aligned CPTAC3 427d9252-69b5-4f48-8323-a719765e3780 d0cdfa7b5bbfd513708f5587bb07e499 { 'aliquot_tag': 'ALQ_41d672f7', 'gdc_sample_type': 'Primary Tumor' } @@ -27258,12 +29253,12 @@ C3N-01798.MethArray.Red.T C3N-01798 GBM Methylation Array tumor CPT0167750007 20 C3N-01798.miRNA-Seq.T C3N-01798 GBM miRNA-Seq tumor CPT0167750010 181119_UNC31-K00269_0165_AH27WCBBXY_CAACTA_S5_L001_R1_001.unaln.bam 263490816 BAM unaligned CPTAC3 53add06a-ea43-4035-a718-280278f6f028 7667813e001e634b79d977f82d829e2c { 'aliquot_tag': 'ALQ_c08af20e', 'gdc_sample_type': 'Primary Tumor' } C3N-01798.miRNA-Seq.T.hg38 C3N-01798 GBM miRNA-Seq tumor CPT0167750010 93a0b5a3-e60b-4b0b-a685-14c3078c0b6d_mirnaseq_gdc_realn.bam 294984219 BAM harmonized CPTAC3 ff1f1f8d-9ff4-42b3-ad0a-b80809484cb9 2a88d26cb19b6c18eb9751fd0d81b905 { 'aliquot_tag': 'ALQ_c08af20e', 'gdc_sample_type': 'Primary Tumor' } C3N-01798.RNA-Seq.chimeric.T.hg38 C3N-01798 GBM RNA-Seq tumor CPT0167750010 65d28268-f99b-438e-8798-ed43028ba352.rna_seq.chimeric.gdc_realn.bam 33436135 BAM chimeric harmonized CPTAC3 df649b81-3315-46d5-8318-95786672ecf7 96827591ef3977c2ca86b2f719c7f2fd { 'aliquot_tag': 'ALQ_c08af20e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01798.RNA-Seq.genomic.T.hg38 C3N-01798 GBM RNA-Seq tumor CPT0167750010 65d28268-f99b-438e-8798-ed43028ba352.rna_seq.genomic.gdc_realn.bam 9124055049 BAM genomic harmonized CPTAC3 03db3b68-ac0c-4e59-8a77-0ade815f0772 2aa30fee85485b075db79d395a8de51c { 'aliquot_tag': 'ALQ_c08af20e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01798.RNA-Seq.R1_L004.T C3N-01798 GBM RNA-Seq tumor CPT0167750010 180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R1_001.fastq.gz 4180544485 FASTQ R1_L004 unaligned CPTAC3 005e5a7c-4809-472d-8819-a25f7833a631 8fce60e163e7de9232649f05a85bdd02 { 'aliquot_tag': 'ALQ_c08af20e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01798.RNA-Seq.R2_L004.T C3N-01798 GBM RNA-Seq tumor CPT0167750010 180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R2_001.fastq.gz 4540740441 FASTQ R2_L004 unaligned CPTAC3 bbf5b3a8-d267-4999-8a95-583d264a55d8 8d38031042ed03df428e0bb48aaa6556 { 'aliquot_tag': 'ALQ_c08af20e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01798.RNA-Seq.genomic.T.hg38 C3N-01798 GBM RNA-Seq tumor CPT0167750010 65d28268-f99b-438e-8798-ed43028ba352.rna_seq.genomic.gdc_realn.bam 9124055049 BAM genomic harmonized CPTAC3 f2dc7610-c8b6-4417-b2c4-d4cca11dbceb 2aa30fee85485b075db79d395a8de51c { 'aliquot_tag': 'ALQ_c08af20e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01798.RNA-Seq.R1_L004.T C3N-01798 GBM RNA-Seq tumor CPT0167750010 180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R1_001.fastq.gz 4180544485 FASTQ R1_L004 unaligned CPTAC3 005e5a7c-4809-472d-8819-a25f7833a631 8fce60e163e7de9232649f05a85bdd02 { 'aliquot_tag': 'ALQ_c08af20e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01798.RNA-Seq.R2_L004.T C3N-01798 GBM RNA-Seq tumor CPT0167750010 180516_UNC31-K00269_0130_BHV22JBBXX_ACAGTG_S15_L004_R2_001.fastq.gz 4540740441 FASTQ R2_L004 unaligned CPTAC3 bbf5b3a8-d267-4999-8a95-583d264a55d8 8d38031042ed03df428e0bb48aaa6556 { 'aliquot_tag': 'ALQ_c08af20e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-01798.RNA-Seq.transcriptome.T.hg38 C3N-01798 GBM RNA-Seq tumor CPT0167750010 65d28268-f99b-438e-8798-ed43028ba352.rna_seq.transcriptome.gdc_realn.bam 11175709099 BAM transcriptome harmonized CPTAC3 ecb795bc-6215-4f5d-a81d-d6ceb01603c0 0b52dd193bd70d0ae0748a99ad00f100 { 'aliquot_tag': 'ALQ_c08af20e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01798.scRNA-Seq.R1_L001.T C3N-01798 GBM scRNA-Seq tumor CPT0167750015 20191220_WUSTL_CPT0167750015_CCACTACA-GATTCTGG-TGCGGCTT-ATGAAGAC_S3_L001_R1_001.fastq.gz 11173530187 FASTQ R1_L001 unaligned CPTAC3 39077fc2-1010-4e46-b6d7-04f14957584c cfe99402393be7dfdbb562072fb446b7 { 'aliquot_tag': 'ALQ_b0e00681', 'gdc_sample_type': 'Primary Tumor' } -C3N-01798.scRNA-Seq.R2_L001.T C3N-01798 GBM scRNA-Seq tumor CPT0167750015 20191220_WUSTL_CPT0167750015_CCACTACA-GATTCTGG-TGCGGCTT-ATGAAGAC_S3_L001_R2_001.fastq.gz 26931565159 FASTQ R2_L001 unaligned CPTAC3 c5b9e968-afcd-413b-b96c-38ccf550950f f6598c0caa7560c9006b132d515e1295 { 'aliquot_tag': 'ALQ_b0e00681', 'gdc_sample_type': 'Primary Tumor' } +C3N-01798.scRNA-Seq.R1_L001.T C3N-01798 GBM scRNA-Seq tumor CPT0167750015 20191220_WUSTL_CPT0167750015_CCACTACA-GATTCTGG-TGCGGCTT-ATGAAGAC_S3_L001_R1_001.fastq.gz 11173530187 FASTQ R1_L001 unaligned CPTAC3 39077fc2-1010-4e46-b6d7-04f14957584c cfe99402393be7dfdbb562072fb446b7 { 'aliquot_tag': 'ALQ_b0e00681', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01798.scRNA-Seq.R2_L001.T C3N-01798 GBM scRNA-Seq tumor CPT0167750015 20191220_WUSTL_CPT0167750015_CCACTACA-GATTCTGG-TGCGGCTT-ATGAAGAC_S3_L001_R2_001.fastq.gz 26931565159 FASTQ R2_L001 unaligned CPTAC3 c5b9e968-afcd-413b-b96c-38ccf550950f f6598c0caa7560c9006b132d515e1295 { 'aliquot_tag': 'ALQ_b0e00681', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-01798.scRNA-Seq.T.hg38 C3N-01798 GBM scRNA-Seq tumor CPT0167750015 possorted_genome_bam.bam 32346182334 BAM harmonized CPTAC3 a72c6a09-a388-4146-81b1-35161b7e952d a399407ab72dbf08fc883f35e7af53a4 { 'aliquot_tag': 'ALQ_b0e00681', 'gdc_sample_type': 'Primary Tumor' } C3N-01798.WGS.N C3N-01798 GBM WGS blood_normal CPT0167810002 CPT0167810002.WholeGenome.RP-1303.bam 67516152886 BAM aligned CPTAC3 842ab574-e778-41d8-9999-5f5bdbf239dc e42d563bae88ec65ce0b0377b03ea51d { 'aliquot_tag': 'ALQ_3349b676', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01798.WGS.N.hg38 C3N-01798 GBM WGS blood_normal CPT0167810002 3fe573bd-7595-4c87-8006-ae55bfb46f6d_wgs_gdc_realn.bam 97251429797 BAM harmonized CPTAC3 eabb8aaa-0339-4d65-828a-4c144da9442d 5ab6c6a438f55908bb3b16bdae6126bb { 'aliquot_tag': 'ALQ_3349b676', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27283,12 +29278,12 @@ C3N-01799.miRNA-Seq.T C3N-01799 LUAD miRNA-Seq tumor CPT0089340006 181119_UNC31- C3N-01799.miRNA-Seq.T.hg38 C3N-01799 LUAD miRNA-Seq tumor CPT0089340006 0548c5e7-1752-4d97-9f14-35b2ec33a66a_mirnaseq_gdc_realn.bam 268907903 BAM harmonized CPTAC3 47f6e3f8-dc1a-4650-8396-209412843431 2685eff92c0983b3fc60141e3129fb38 { 'aliquot_tag': 'ALQ_c4cd70f0', 'gdc_sample_type': 'Primary Tumor' } C3N-01799.RNA-Seq.chimeric.A.hg38 C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 7bd8b98e-9f13-4f06-8533-2c30d888ba88.rna_seq.chimeric.gdc_realn.bam 77771243 BAM chimeric harmonized CPTAC3 f64708f9-4e8d-4cf6-9bf1-695c986ebaf3 2fc5dec7b209c3b7a88b6a97170154b9 { 'aliquot_tag': 'ALQ_be0d2390', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01799.RNA-Seq.chimeric.T.hg38 C3N-01799 LUAD RNA-Seq tumor CPT0089340006 889b7db3-5c07-4c44-9b31-afb05be82ec6.rna_seq.chimeric.gdc_realn.bam 98767640 BAM chimeric harmonized CPTAC3 d1218bcf-21ae-4fa8-a479-40053817a5ac ede8aeaa474ac71f643869df57d5ba50 { 'aliquot_tag': 'ALQ_c4cd70f0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01799.RNA-Seq.genomic.A.hg38 C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 7bd8b98e-9f13-4f06-8533-2c30d888ba88.rna_seq.genomic.gdc_realn.bam 8557746792 BAM genomic harmonized CPTAC3 06a8a5f5-b627-42c9-bc00-2f89e33eee86 02ed0ab4380cd0354b7458f5e99e7848 { 'aliquot_tag': 'ALQ_be0d2390', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01799.RNA-Seq.genomic.T.hg38 C3N-01799 LUAD RNA-Seq tumor CPT0089340006 889b7db3-5c07-4c44-9b31-afb05be82ec6.rna_seq.genomic.gdc_realn.bam 9884502257 BAM genomic harmonized CPTAC3 e2eb5c31-29de-4e07-bd69-8dbba6bf7844 391debbdb174037c2492a405f5f287b4 { 'aliquot_tag': 'ALQ_c4cd70f0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01799.RNA-Seq.R1_L001.T C3N-01799 LUAD RNA-Seq tumor CPT0089340006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L001_R1_001.fastq.gz 4278461848 FASTQ R1_L001 unaligned CPTAC3 2e828388-091a-4362-a141-d6849d21224b e6fb2f55770ff46abd38afa96d7e4386 { 'aliquot_tag': 'ALQ_c4cd70f0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01799.RNA-Seq.R1_L005.A C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 171205_UNC32-K00270_0069_BHN2HGBBXX_TGACCA_S20_L005_R1_001.fastq.gz 4265498706 FASTQ R1_L005 unaligned CPTAC3 8c879f0f-6ff0-4ec4-a046-e7dbfae29568 08bf6eec1749e2ba6d2c3c5cb7ad39af { 'aliquot_tag': 'ALQ_be0d2390', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01799.RNA-Seq.R2_L001.T C3N-01799 LUAD RNA-Seq tumor CPT0089340006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4568947945 FASTQ R2_L001 unaligned CPTAC3 737e0b9e-3029-4ebe-a3c1-ca9b807072e5 da86d6a76214fe19634c4d6e364322d5 { 'aliquot_tag': 'ALQ_c4cd70f0', 'gdc_sample_type': 'Primary Tumor' } -C3N-01799.RNA-Seq.R2_L005.A C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 171205_UNC32-K00270_0069_BHN2HGBBXX_TGACCA_S20_L005_R2_001.fastq.gz 4393858109 FASTQ R2_L005 unaligned CPTAC3 84d28597-e5a3-45b9-84cc-7b365728175a 218444c6cf389acf2835a4d1621e6c94 { 'aliquot_tag': 'ALQ_be0d2390', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01799.RNA-Seq.genomic.A.hg38 C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 7bd8b98e-9f13-4f06-8533-2c30d888ba88.rna_seq.genomic.gdc_realn.bam 8557746792 BAM genomic harmonized CPTAC3 7029493f-dca9-489f-a6d8-6dce457bd2c7 02ed0ab4380cd0354b7458f5e99e7848 { 'aliquot_tag': 'ALQ_be0d2390', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01799.RNA-Seq.genomic.T.hg38 C3N-01799 LUAD RNA-Seq tumor CPT0089340006 889b7db3-5c07-4c44-9b31-afb05be82ec6.rna_seq.genomic.gdc_realn.bam 9884502257 BAM genomic harmonized CPTAC3 3bc94e13-e05d-445c-8e40-56e0528c6f0a 391debbdb174037c2492a405f5f287b4 { 'aliquot_tag': 'ALQ_c4cd70f0', 'gdc_sample_type': 'Primary Tumor' } +C3N-01799.RNA-Seq.R1_L001.T C3N-01799 LUAD RNA-Seq tumor CPT0089340006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L001_R1_001.fastq.gz 4278461848 FASTQ R1_L001 unaligned CPTAC3 2e828388-091a-4362-a141-d6849d21224b e6fb2f55770ff46abd38afa96d7e4386 { 'aliquot_tag': 'ALQ_c4cd70f0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01799.RNA-Seq.R1_L005.A C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 171205_UNC32-K00270_0069_BHN2HGBBXX_TGACCA_S20_L005_R1_001.fastq.gz 4265498706 FASTQ R1_L005 unaligned CPTAC3 8c879f0f-6ff0-4ec4-a046-e7dbfae29568 08bf6eec1749e2ba6d2c3c5cb7ad39af { 'aliquot_tag': 'ALQ_be0d2390', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01799.RNA-Seq.R2_L001.T C3N-01799 LUAD RNA-Seq tumor CPT0089340006 171109_UNC31-K00269_0090_AHLHNWBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4568947945 FASTQ R2_L001 unaligned CPTAC3 737e0b9e-3029-4ebe-a3c1-ca9b807072e5 da86d6a76214fe19634c4d6e364322d5 { 'aliquot_tag': 'ALQ_c4cd70f0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01799.RNA-Seq.R2_L005.A C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 171205_UNC32-K00270_0069_BHN2HGBBXX_TGACCA_S20_L005_R2_001.fastq.gz 4393858109 FASTQ R2_L005 unaligned CPTAC3 84d28597-e5a3-45b9-84cc-7b365728175a 218444c6cf389acf2835a4d1621e6c94 { 'aliquot_tag': 'ALQ_be0d2390', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-01799.RNA-Seq.transcriptome.A.hg38 C3N-01799 LUAD RNA-Seq tissue_normal CPT0089360006 7bd8b98e-9f13-4f06-8533-2c30d888ba88.rna_seq.transcriptome.gdc_realn.bam 9871552828 BAM transcriptome harmonized CPTAC3 809b8c20-5ea4-4656-807c-d1099456fcf6 52af17007a5c875efd728efa185f1ec6 { 'aliquot_tag': 'ALQ_be0d2390', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01799.RNA-Seq.transcriptome.T.hg38 C3N-01799 LUAD RNA-Seq tumor CPT0089340006 889b7db3-5c07-4c44-9b31-afb05be82ec6.rna_seq.transcriptome.gdc_realn.bam 9249690365 BAM transcriptome harmonized CPTAC3 d3ef56d6-ab93-43d5-a6b9-1256d0f4b814 b86c0f6f04527b54ea1031c88db037dd { 'aliquot_tag': 'ALQ_c4cd70f0', 'gdc_sample_type': 'Primary Tumor' } C3N-01799.WGS.A C3N-01799 LUAD WGS tissue_normal CPT0089360009 CPT0089360009.WholeGenome.RP-1303.bam 53843619893 BAM aligned CPTAC3 f9bb6fce-6c40-4fb7-a3a3-b984eab44106 c935879677922fe2be6c4983e222dd1f { 'aliquot_tag': 'ALQ_2eb23e01', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -27308,12 +29303,15 @@ C3N-01802.MethArray.Red.T C3N-01802 UCEC Methylation Array tumor CPT0080030009 2 C3N-01802.miRNA-Seq.T C3N-01802 UCEC miRNA-Seq tumor CPT0080030006 181012_UNC32-K00270_0124_AH223CBBXY_TAATCG_S15_L001_R1_001.unaln.bam 164014778 BAM unaligned CPTAC3 4f6226a0-7276-41bf-9f3f-50ed0c782036 212d9d3a67e1d0940b0bc34b176d0e10 { 'aliquot_tag': 'ALQ_65e19b9d', 'gdc_sample_type': 'Primary Tumor' } C3N-01802.miRNA-Seq.T.hg38 C3N-01802 UCEC miRNA-Seq tumor CPT0080030006 a14d4e70-72e3-48a8-ad26-182fa764b880_mirnaseq_gdc_realn.bam 182574657 BAM harmonized CPTAC3 7863a45f-d1de-4f99-b163-60504fe25ce7 0bc1855aa24fabb79b61862651de5d8c { 'aliquot_tag': 'ALQ_65e19b9d', 'gdc_sample_type': 'Primary Tumor' } C3N-01802.RNA-Seq.chimeric.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080030006 131129f0-831d-4479-a1b0-6e102ad64307.rna_seq.chimeric.gdc_realn.bam 40385468 BAM chimeric harmonized CPTAC3 3cb1a09a-4486-46af-a1d4-d7a258f5a16d 853ecca9b5f26bbbd07b445514a79b08 { 'aliquot_tag': 'ALQ_65e19b9d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01802.RNA-Seq.chimeric.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080050001 8ad0c694-34de-46d7-bc8b-1671ca902347.rna_seq.chimeric.gdc_realn.bam 140822640 BAM chimeric harmonized CPTAC3 e0a10d62-8602-41a1-aafe-d0b5cb1b2a4c ed334aa9e85a7d09e4abe1eecf71b6c4 { 'aliquot_tag': 'ALQ_74c5fb9e', 'gdc_sample_type': 'Primary Tumor' } C3N-01802.RNA-Seq.genomic.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080030006 131129f0-831d-4479-a1b0-6e102ad64307.rna_seq.genomic.gdc_realn.bam 9189877272 BAM genomic harmonized CPTAC3 aed7686c-dbfd-48b5-9201-24a2d74a9cc6 eebd615da0bc1de8f2ec1e719ef707ab { 'aliquot_tag': 'ALQ_65e19b9d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01802.RNA-Seq.R1_L004.T C3N-01802 UCEC RNA-Seq tumor CPT0080030006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 4415765799 FASTQ R1_L004 unaligned CPTAC3 06944ccc-05d4-42d9-917f-3e3e86355149 ec1309b9e47af72489bb4eea7cd0ceb2 { 'aliquot_tag': 'ALQ_65e19b9d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01802.RNA-Seq.R1_.T C3N-01802 UCEC RNA-Seq tumor CPT0080050001 20210729_P3_B4_WB7988-Plate3_S16_R1_001.fastq.gz 6163519789 FASTQ R1_ unaligned CPTAC3 b3b63880-a5f9-4310-bffc-cbcbedb9fe2f 6f871c085cb09718db358594aab8cfbd { 'aliquot_tag': 'ALQ_74c5fb9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01802.RNA-Seq.R2_L004.T C3N-01802 UCEC RNA-Seq tumor CPT0080030006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 4625364899 FASTQ R2_L004 unaligned CPTAC3 6820bed8-165e-49af-bfeb-3cd127060651 3dd896aa5793720ede5065249ad13f41 { 'aliquot_tag': 'ALQ_65e19b9d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01802.RNA-Seq.R2_.T C3N-01802 UCEC RNA-Seq tumor CPT0080050001 20210729_P3_B4_WB7988-Plate3_S16_R2_001.fastq.gz 6433473055 FASTQ R2_ unaligned CPTAC3 eebc17b7-00db-482a-a4e2-aadc74ec2778 cc6e98f8e0c3093500a84a722facdd03 { 'aliquot_tag': 'ALQ_74c5fb9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01802.RNA-Seq.genomic.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080050001 8ad0c694-34de-46d7-bc8b-1671ca902347.rna_seq.genomic.gdc_realn.bam 11026207218 BAM genomic harmonized CPTAC3 fe58fb9b-723d-40cb-a142-ff9e755a2e0a b89c212f721a272574c770adf70baaa2 { 'aliquot_tag': 'ALQ_74c5fb9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01802.RNA-Seq.R1_L004.T C3N-01802 UCEC RNA-Seq tumor CPT0080030006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CCGTCC_S16_L004_R1_001.fastq.gz 4415765799 FASTQ R1_L004 unaligned CPTAC3 06944ccc-05d4-42d9-917f-3e3e86355149 ec1309b9e47af72489bb4eea7cd0ceb2 { 'aliquot_tag': 'ALQ_65e19b9d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01802.RNA-Seq.R2_L004.T C3N-01802 UCEC RNA-Seq tumor CPT0080030006 170906_UNC32-K00270_0058_BHLJ7FBBXX_CCGTCC_S16_L004_R2_001.fastq.gz 4625364899 FASTQ R2_L004 unaligned CPTAC3 6820bed8-165e-49af-bfeb-3cd127060651 3dd896aa5793720ede5065249ad13f41 { 'aliquot_tag': 'ALQ_65e19b9d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01802.RNA-Seq.T C3N-01802 UCEC RNA-Seq tumor CPT0080050001 20210729_P3_B4_WB7988-Plate3_S16_R1_001.fastq.gz 6163519789 FASTQ unaligned CPTAC3 b3b63880-a5f9-4310-bffc-cbcbedb9fe2f 6f871c085cb09718db358594aab8cfbd +C3N-01802.RNA-Seq.T C3N-01802 UCEC RNA-Seq tumor CPT0080050001 20210729_P3_B4_WB7988-Plate3_S16_R2_001.fastq.gz 6433473055 FASTQ unaligned CPTAC3 eebc17b7-00db-482a-a4e2-aadc74ec2778 cc6e98f8e0c3093500a84a722facdd03 C3N-01802.RNA-Seq.transcriptome.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080030006 131129f0-831d-4479-a1b0-6e102ad64307.rna_seq.transcriptome.gdc_realn.bam 12349103051 BAM transcriptome harmonized CPTAC3 74cccdd9-a929-4937-ac33-1cc3fe690bc1 fd4379f45365047a2b65b0170559aab6 { 'aliquot_tag': 'ALQ_65e19b9d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01802.RNA-Seq.transcriptome.T.hg38 C3N-01802 UCEC RNA-Seq tumor CPT0080050001 8ad0c694-34de-46d7-bc8b-1671ca902347.rna_seq.transcriptome.gdc_realn.bam 5514520660 BAM transcriptome harmonized CPTAC3 bf4f1c2d-6bc1-4747-a82b-a38276d86b17 35666ce61bbcded19df6ec73c6d2dcc3 { 'aliquot_tag': 'ALQ_74c5fb9e', 'gdc_sample_type': 'Primary Tumor' } C3N-01802.WGS.N C3N-01802 UCEC WGS blood_normal CPT0080810002 CPT0080810002.WholeGenome.RP-1303.bam 76482218544 BAM aligned CPTAC3 c6bb3664-f51d-43c7-a67d-eddc5264168a 251c709abc2ccb8224a6b97b9673d6bb { 'aliquot_tag': 'ALQ_f41f8e89', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01802.WGS.N.hg38 C3N-01802 UCEC WGS blood_normal CPT0080810002 f5ae7b0e-9213-4424-a10e-7f1383d33b5b_gdc_realn.bam 113580834663 BAM harmonized CPTAC3 68ed2c5e-6ac7-4305-b273-d1c649e89954 2b30d4cd69dbca2cad4b4cf67e4086e5 { 'aliquot_tag': 'ALQ_f41f8e89', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01802.WGS.T C3N-01802 UCEC WGS tumor CPT0080030009 CPT0080030009.WholeGenome.RP-1303.bam 71175352210 BAM aligned CPTAC3 1e048b0a-ec53-4bee-a536-4b122545f4e6 06a1aedde382fa61fb2b4564f2a82a93 { 'aliquot_tag': 'ALQ_f55e860c', 'gdc_sample_type': 'Primary Tumor' } @@ -27330,16 +29328,16 @@ C3N-01803.miRNA-Seq.A C3N-01803 CCRCC miRNA-Seq tissue_normal CPT0384910009 2101 C3N-01803.miRNA-Seq.A.hg38 C3N-01803 CCRCC miRNA-Seq tissue_normal CPT0384910009 59cca0be-f560-43d1-8013-7c824c2475f9_mirnaseq_gdc_realn.bam 367048271 BAM harmonized CPTAC3 9e175c74-d616-4075-89a6-5cc92d3ede9d 681d4ae89c9fa6bb8776de32c6880372 { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01803.miRNA-Seq.T C3N-01803 CCRCC miRNA-Seq tumor CPT0384890009 210111_UNC32-K00270_0270_AHJ5LKBBXY_TATAAT_S34_L003_R1_001.unaln.bam 365876507 BAM unaligned CPTAC3 11c29af7-b7d8-412b-835d-81bdec996bf3 93ecf85f4fd6b5ba485efa5df3da51e4 { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor' } C3N-01803.miRNA-Seq.T.hg38 C3N-01803 CCRCC miRNA-Seq tumor CPT0384890009 ac9ae554-1486-4091-914c-d98ec83a15d9_mirnaseq_gdc_realn.bam 390185262 BAM harmonized CPTAC3 1c2d783b-3236-4c69-ba52-afacb99197e4 7397ff4a4c317120d216d407f1b15db0 { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor' } -C3N-01803.RNA-Seq.chimeric.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 1cbdf596-4b22-4a45-af87-2b8912c0bae8.rna_seq.chimeric.gdc_realn.bam 268774135 BAM chimeric harmonized CPTAC3 56ff865a-69fb-489b-abd1-830435711f93 cc586f24e010ae5badd3aede94fa94e0 { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01803.RNA-Seq.chimeric.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 b6ac619b-41ee-4abb-8884-051575b3d90b.rna_seq.chimeric.gdc_realn.bam 273318219 BAM chimeric harmonized CPTAC3 424e29d5-adce-4c85-bae2-f5d88b0ef5e4 38728d83e585fce5d3c5377627e638b7 { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor' } -C3N-01803.RNA-Seq.genomic.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 1cbdf596-4b22-4a45-af87-2b8912c0bae8.rna_seq.genomic.gdc_realn.bam 8268370363 BAM genomic harmonized CPTAC3 30e172a5-f8f1-42de-adb9-5d10d79a69b6 7fec3cc10a555a1ab08f79200ebde8cc { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01803.RNA-Seq.genomic.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 b6ac619b-41ee-4abb-8884-051575b3d90b.rna_seq.genomic.gdc_realn.bam 7828102650 BAM genomic harmonized CPTAC3 ef646604-9c94-4c31-b319-e20de09dfb9b d32c2bcaf7a29461fce0188e6c4e75e8 { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor' } -C3N-01803.RNA-Seq.R1_L004.A C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 210105_UNC32-K00270_0268_AHK7HMBBXY_CAACAATG-CTTCACGG_S11_L004_R1_001.fastq.gz 3750693333 FASTQ R1_L004 unaligned CPTAC3 4c23de64-a0a4-40bb-a86a-cef9ca55b541 233b458d3f8ddf0b62decfef1ae87938 { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01803.RNA-Seq.R1_L005.T C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGTGAACC-GCGTTGGA_S17_L005_R1_001.fastq.gz 3483233393 FASTQ R1_L005 unaligned CPTAC3 8fc92fb9-a3cf-407c-a9c4-f46543c8a100 99addfd3055f4eac5b6d8e0e503a06d6 { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor' } -C3N-01803.RNA-Seq.R2_L004.A C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 210105_UNC32-K00270_0268_AHK7HMBBXY_CAACAATG-CTTCACGG_S11_L004_R2_001.fastq.gz 4263216443 FASTQ R2_L004 unaligned CPTAC3 8c1ad916-bfbb-4548-b4dd-a398afe4adc7 4882869fa92cbfb1cb6be435747a0152 { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01803.RNA-Seq.R2_L005.T C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGTGAACC-GCGTTGGA_S17_L005_R2_001.fastq.gz 3985080540 FASTQ R2_L005 unaligned CPTAC3 ea130a72-04ef-4721-8183-f4e149fcd097 bb2acc754947b6a8579e7c93e9c3f23a { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor' } -C3N-01803.RNA-Seq.transcriptome.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 1cbdf596-4b22-4a45-af87-2b8912c0bae8.rna_seq.transcriptome.gdc_realn.bam 7957172099 BAM transcriptome harmonized CPTAC3 b9fc085c-5c82-449b-a79f-101dad06fcd3 6c392113ceb0891c1dadde0e81589ad8 { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01803.RNA-Seq.transcriptome.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 b6ac619b-41ee-4abb-8884-051575b3d90b.rna_seq.transcriptome.gdc_realn.bam 7377507817 BAM transcriptome harmonized CPTAC3 b6904b9b-8ade-47d1-9aad-df77f993d141 515cbc4637f5243a51caeddee2474522 { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor' } +C3N-01803.RNA-Seq.chimeric.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 430da25e-9973-43ed-ace3-2971adc05335.rna_seq.chimeric.gdc_realn.bam 268771014 BAM chimeric harmonized CPTAC3 5b362c82-c6cd-4d3c-8840-1ac40fb5827d 57d63680e1a1aa23e75ad9423df586ad { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01803.RNA-Seq.chimeric.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 a923585f-70ab-45d4-a10c-3ff08d90f8fb.rna_seq.chimeric.gdc_realn.bam 273336136 BAM chimeric harmonized CPTAC3 b85e032d-0f69-41b0-a24f-ad4ff604f0d6 d7d37f9fd4378fb10bfa002bdf650668 { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor' } +C3N-01803.RNA-Seq.genomic.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 430da25e-9973-43ed-ace3-2971adc05335.rna_seq.genomic.gdc_realn.bam 8275351212 BAM genomic harmonized CPTAC3 59584b00-51ec-4cbb-9832-6393d3d4db4d 06f264484417161883376789c984787d { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01803.RNA-Seq.genomic.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 a923585f-70ab-45d4-a10c-3ff08d90f8fb.rna_seq.genomic.gdc_realn.bam 7835159591 BAM genomic harmonized CPTAC3 cce1b114-56e4-4c9a-8e8c-22fff389e37c b10fdf19686c95a5d8d70a7055842276 { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor' } +C3N-01803.RNA-Seq.R1_L004.A C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 210105_UNC32-K00270_0268_AHK7HMBBXY_CAACAATG-CTTCACGG_S11_L004_R1_001.fastq.gz 3750693333 FASTQ R1_L004 unaligned CPTAC3 4c23de64-a0a4-40bb-a86a-cef9ca55b541 233b458d3f8ddf0b62decfef1ae87938 { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01803.RNA-Seq.R1_L005.T C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGTGAACC-GCGTTGGA_S17_L005_R1_001.fastq.gz 3483233393 FASTQ R1_L005 unaligned CPTAC3 8fc92fb9-a3cf-407c-a9c4-f46543c8a100 99addfd3055f4eac5b6d8e0e503a06d6 { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01803.RNA-Seq.R2_L004.A C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 210105_UNC32-K00270_0268_AHK7HMBBXY_CAACAATG-CTTCACGG_S11_L004_R2_001.fastq.gz 4263216443 FASTQ R2_L004 unaligned CPTAC3 8c1ad916-bfbb-4548-b4dd-a398afe4adc7 4882869fa92cbfb1cb6be435747a0152 { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01803.RNA-Seq.R2_L005.T C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 210105_UNC32-K00270_0268_AHK7HMBBXY_GGTGAACC-GCGTTGGA_S17_L005_R2_001.fastq.gz 3985080540 FASTQ R2_L005 unaligned CPTAC3 ea130a72-04ef-4721-8183-f4e149fcd097 bb2acc754947b6a8579e7c93e9c3f23a { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01803.RNA-Seq.transcriptome.A.hg38 C3N-01803 CCRCC RNA-Seq tissue_normal CPT0384910009 430da25e-9973-43ed-ace3-2971adc05335.rna_seq.transcriptome.gdc_realn.bam 9104726181 BAM transcriptome harmonized CPTAC3 7997c364-751b-42e4-b786-b95541672ba9 41b46313f0bc701f8b0fb7e11fe188f5 { 'aliquot_tag': 'ALQ_65539c72', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01803.RNA-Seq.transcriptome.T.hg38 C3N-01803 CCRCC RNA-Seq tumor CPT0384890009 a923585f-70ab-45d4-a10c-3ff08d90f8fb.rna_seq.transcriptome.gdc_realn.bam 8332766520 BAM transcriptome harmonized CPTAC3 5f5741d7-e1c8-4aa7-9616-14bb882b9dc1 69cbf34358268fd6ac058fdc54a5dd87 { 'aliquot_tag': 'ALQ_9e7f0416', 'gdc_sample_type': 'Primary Tumor' } C3N-01803.WGS.N C3N-01803 CCRCC WGS blood_normal CPT0385470002 CPT0385470002.WholeGenome.RP-2158.bam 32913637065 BAM aligned CPTAC3 e23c5fc7-da3c-4d4b-9164-c7696d9ff97b 7b9c91e07d5c6189eb4bdd4e284c8715 { 'aliquot_tag': 'ALQ_6728a830', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01803.WGS.N.hg38 C3N-01803 CCRCC WGS blood_normal CPT0385470002 f2a81e35-3ace-4506-aef2-b0d4cd490443_wgs_gdc_realn.bam 99069064720 BAM harmonized CPTAC3 772bf1ba-cb74-47ac-97d4-1200328d32fa ee6e4a1907374d368e5536bfea676c28 { 'aliquot_tag': 'ALQ_6728a830', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01803.WGS.T C3N-01803 CCRCC WGS tumor CPT0384890006 CPT0384890006.WholeGenome.RP-2158.bam 21033309147 BAM aligned CPTAC3 64344e1f-cca5-4b28-ad4c-53e6e3cf31c1 c92a2bf72185f16395a19814a7f9ff3c { 'aliquot_tag': 'ALQ_ec01987', 'gdc_sample_type': 'Primary Tumor' } @@ -27358,16 +29356,16 @@ C3N-01806.miRNA-Seq.A C3N-01806 CCRCC miRNA-Seq tissue_normal CPT0115710009 1901 C3N-01806.miRNA-Seq.A.hg38 C3N-01806 CCRCC miRNA-Seq tissue_normal CPT0115710009 9bf294ff-9477-45bd-92cc-df0474c457b0_mirnaseq_gdc_realn.bam 220484910 BAM harmonized CPTAC3 5712a026-438c-4ff9-a8dd-1b61ca3bb25a d1c3855ffecbb6f2ba0c971fadb7062b { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01806.miRNA-Seq.T C3N-01806 CCRCC miRNA-Seq tumor CPT0115680006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGGCC_S20_L002_R1_001.unaln.bam 178513399 BAM unaligned CPTAC3 ebb0d1b3-a4a9-453b-b3cc-e4c243c5ddf5 e5bd0efbc51a3a0ef80b30318be790da { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor' } C3N-01806.miRNA-Seq.T.hg38 C3N-01806 CCRCC miRNA-Seq tumor CPT0115680006 365e5da7-bcf2-4591-a24e-b0077dffe6f4_mirnaseq_gdc_realn.bam 195323195 BAM harmonized CPTAC3 23def0a0-8daa-47a5-9036-db9be6f627c5 b53ce9085818096b205de35c749d25e0 { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01806.RNA-Seq.chimeric.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 618e4407-53be-4da6-aa1c-9c852ecc7f2f.rna_seq.chimeric.gdc_realn.bam 43271739 BAM chimeric harmonized CPTAC3 65a19db3-b148-48d2-989c-25afa59bbad9 5c153bc38555ff69e62a9d9c8f356c26 { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01806.RNA-Seq.chimeric.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 be25e7ce-f881-46ec-b142-ee9632c3e9f7.rna_seq.chimeric.gdc_realn.bam 24601142 BAM chimeric harmonized CPTAC3 9ff244e0-4a94-4aab-a39c-a296fb03687f 9a1ee3df6e859e942e8743ead84d3bfb { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01806.RNA-Seq.genomic.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 618e4407-53be-4da6-aa1c-9c852ecc7f2f.rna_seq.genomic.gdc_realn.bam 9529058270 BAM genomic harmonized CPTAC3 7c17f5dd-a06e-4729-bfc1-0dbc1a592be9 7adbad2dd6f35eb7e55240dd4fca81a0 { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01806.RNA-Seq.genomic.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 be25e7ce-f881-46ec-b142-ee9632c3e9f7.rna_seq.genomic.gdc_realn.bam 8040777061 BAM genomic harmonized CPTAC3 e8149201-9531-4425-b486-0a76ecab4c50 e06fcf5044bdd47f413cc8659aa58d38 { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01806.RNA-Seq.R1_L006.T C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTTTCG_S24_L006_R1_001.fastq.gz 3590677616 FASTQ R1_L006 unaligned CPTAC3 acb2aa7e-d05f-4fbc-acab-292f9953f064 3ca573604af01627c81122168d18958f { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01806.RNA-Seq.R1_L008.A C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 190104_UNC31-K00269_0175_BH32LHBBXY_ACTGAT_S78_L008_R1_001.fastq.gz 4463683051 FASTQ R1_L008 unaligned CPTAC3 bcf0ebc5-4f98-41fb-98d5-70483aac5e09 c560f6971c149edb6d07e118662f611c { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01806.RNA-Seq.R2_L006.T C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTTTCG_S24_L006_R2_001.fastq.gz 3950912340 FASTQ R2_L006 unaligned CPTAC3 962cc125-5e3b-4b43-afa5-e5e2819cd3d1 b730b93ecb28f260b76317628649c818 { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor' } -C3N-01806.RNA-Seq.R2_L008.A C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 190104_UNC31-K00269_0175_BH32LHBBXY_ACTGAT_S78_L008_R2_001.fastq.gz 4609980250 FASTQ R2_L008 unaligned CPTAC3 75b2022c-28f9-4b36-81c5-83347dd4ef92 94df5d250af776348f7974b9362ed6ba { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01806.RNA-Seq.transcriptome.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 618e4407-53be-4da6-aa1c-9c852ecc7f2f.rna_seq.transcriptome.gdc_realn.bam 10026123468 BAM transcriptome harmonized CPTAC3 45110afc-7fe9-4020-b229-a4d165849adb 056a63d34269a72b0ef55875d4782144 { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01806.RNA-Seq.transcriptome.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 be25e7ce-f881-46ec-b142-ee9632c3e9f7.rna_seq.transcriptome.gdc_realn.bam 9555935827 BAM transcriptome harmonized CPTAC3 8e183aec-98a5-41e7-ab47-858b3dd4297c e303d954b8b9de915a3ea037e62da9f5 { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01806.RNA-Seq.chimeric.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 c78513b6-47b9-4c2b-b003-165ce7ee0648.rna_seq.chimeric.gdc_realn.bam 43250241 BAM chimeric harmonized CPTAC3 b8358765-fe3b-4aca-adca-cc5d45d69aea 35dc91dcc43f3300530de8437fc7fe13 { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01806.RNA-Seq.chimeric.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 de3235a1-d9a2-4df2-be41-60928c714458.rna_seq.chimeric.gdc_realn.bam 24580315 BAM chimeric harmonized CPTAC3 f3ca1cdf-a085-45cd-b416-8aaee4fb26ed c1df3588d763c9c26a4c743e6b3141a5 { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01806.RNA-Seq.genomic.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 c78513b6-47b9-4c2b-b003-165ce7ee0648.rna_seq.genomic.gdc_realn.bam 9532008518 BAM genomic harmonized CPTAC3 330f6c49-cfb1-4cda-b569-c6cf9cb7c867 2335cb49e4f964115f9abc78ea5e16c0 { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01806.RNA-Seq.genomic.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 de3235a1-d9a2-4df2-be41-60928c714458.rna_seq.genomic.gdc_realn.bam 8042235703 BAM genomic harmonized CPTAC3 51969af9-c9b7-4217-a2d4-321d2dbdfbf1 3569e422f202abf522d059bfccdfb5a2 { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor' } +C3N-01806.RNA-Seq.R1_L006.T C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTTTCG_S24_L006_R1_001.fastq.gz 3590677616 FASTQ R1_L006 unaligned CPTAC3 acb2aa7e-d05f-4fbc-acab-292f9953f064 3ca573604af01627c81122168d18958f { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01806.RNA-Seq.R1_L008.A C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 190104_UNC31-K00269_0175_BH32LHBBXY_ACTGAT_S78_L008_R1_001.fastq.gz 4463683051 FASTQ R1_L008 unaligned CPTAC3 bcf0ebc5-4f98-41fb-98d5-70483aac5e09 c560f6971c149edb6d07e118662f611c { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01806.RNA-Seq.R2_L006.T C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTTTCG_S24_L006_R2_001.fastq.gz 3950912340 FASTQ R2_L006 unaligned CPTAC3 962cc125-5e3b-4b43-afa5-e5e2819cd3d1 b730b93ecb28f260b76317628649c818 { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01806.RNA-Seq.R2_L008.A C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 190104_UNC31-K00269_0175_BH32LHBBXY_ACTGAT_S78_L008_R2_001.fastq.gz 4609980250 FASTQ R2_L008 unaligned CPTAC3 75b2022c-28f9-4b36-81c5-83347dd4ef92 94df5d250af776348f7974b9362ed6ba { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-01806.RNA-Seq.transcriptome.A.hg38 C3N-01806 CCRCC RNA-Seq tissue_normal CPT0115710009 c78513b6-47b9-4c2b-b003-165ce7ee0648.rna_seq.transcriptome.gdc_realn.bam 11455491666 BAM transcriptome harmonized CPTAC3 f23ad047-3394-415d-ad65-269ac9b08789 5d2df3bc67031673fc3617db75724d6d { 'aliquot_tag': 'ALQ_c897c51b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01806.RNA-Seq.transcriptome.T.hg38 C3N-01806 CCRCC RNA-Seq tumor CPT0115680006 de3235a1-d9a2-4df2-be41-60928c714458.rna_seq.transcriptome.gdc_realn.bam 10691453104 BAM transcriptome harmonized CPTAC3 29e0860a-3072-4fae-b6ce-0a59d783f105 412695dfbbb76ca77183f3f9a7e60245 { 'aliquot_tag': 'ALQ_9e64695e', 'gdc_sample_type': 'Primary Tumor' } C3N-01806.WGS.A C3N-01806 CCRCC WGS tissue_normal CPT0115710006 CPT0115710006.WholeGenome.RP-1303.bam 53869491619 BAM aligned CPTAC3 9cf47423-62d8-4e36-b1cb-f7ea711c29f3 84ea2bb1cfd4d63c5daadf680c539ac6 { 'aliquot_tag': 'ALQ_5828d88a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01806.WGS.A.hg38 C3N-01806 CCRCC WGS tissue_normal CPT0115710006 64942c93-f992-4040-b6a2-f04ff39ccf4c_wgs_gdc_realn.bam 77191559557 BAM harmonized CPTAC3 87f5eb05-629c-48a3-869c-c526181f6146 31cc17a164c7421ceebceb2e16e04d1d { 'aliquot_tag': 'ALQ_5828d88a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01806.WGS.N C3N-01806 CCRCC WGS blood_normal CPT0116370002 CPT0116370002.WholeGenome.RP-1303.bam 67036880881 BAM aligned CPTAC3 1042e165-2bfa-43a6-bedc-7dc60c61e8d0 76ff4c74f36c7acf10b4460bb5bab5b4 { 'aliquot_tag': 'ALQ_7a7cb1b8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27391,11 +29389,11 @@ C3N-01808.miRNA-Seq.T.hg38 C3N-01808 CCRCC miRNA-Seq tumor CPT0089460006 4c1f4c4 C3N-01808.RNA-Seq.chimeric.A.hg38 C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 8da659d6-76a1-41de-b45e-3be7a798389b.rna_seq.chimeric.gdc_realn.bam 93571200 BAM chimeric harmonized CPTAC3 7cc69a53-0c42-4439-94e9-487dac416485 dd50e9f38e653a552108d2143062df2f { 'aliquot_tag': 'ALQ_1c38ad49', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01808.RNA-Seq.chimeric.T.hg38 C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 cc06595d-3a36-4e6f-8c87-56321ed9051d.rna_seq.chimeric.gdc_realn.bam 34431085 BAM chimeric harmonized CPTAC3 66e9f885-005e-4ff8-867b-2de82852f8fb 4d449a0222e4e3163ebf35b15ffab0bc { 'aliquot_tag': 'ALQ_a3081328', 'gdc_sample_type': 'Primary Tumor' } C3N-01808.RNA-Seq.genomic.A.hg38 C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 8da659d6-76a1-41de-b45e-3be7a798389b.rna_seq.genomic.gdc_realn.bam 9508422205 BAM genomic harmonized CPTAC3 116657b5-4199-447c-ab9f-6a4a463f49ed c4d58556d604c545ee0d6a64f348fd1b { 'aliquot_tag': 'ALQ_1c38ad49', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01808.RNA-Seq.genomic.T.hg38 C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 cc06595d-3a36-4e6f-8c87-56321ed9051d.rna_seq.genomic.gdc_realn.bam 7425489211 BAM genomic harmonized CPTAC3 25c13f94-14bc-4a98-b21d-c63d49f6caf1 3a6811e88054e4e6ad9b9c22c8bdae3e { 'aliquot_tag': 'ALQ_a3081328', 'gdc_sample_type': 'Primary Tumor' } -C3N-01808.RNA-Seq.R1_L003.A C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 171205_UNC32-K00270_0069_BHN2HGBBXX_GGCTAC_S11_L003_R1_001.fastq.gz 4528881184 FASTQ R1_L003 unaligned CPTAC3 fdf08798-675e-478a-a72b-7b925d01a950 b158c9f6eb40258a0366711dee2e38fb { 'aliquot_tag': 'ALQ_1c38ad49', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01808.RNA-Seq.R1_L004.T C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGAAA_S48_L004_R1_001.fastq.gz 3429150091 FASTQ R1_L004 unaligned CPTAC3 a71bea30-6a66-4c8f-b526-464c906f5b1a 0e876bccad6724217183d159d8ae7cf7 { 'aliquot_tag': 'ALQ_a3081328', 'gdc_sample_type': 'Primary Tumor' } -C3N-01808.RNA-Seq.R2_L003.A C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 171205_UNC32-K00270_0069_BHN2HGBBXX_GGCTAC_S11_L003_R2_001.fastq.gz 4993203081 FASTQ R2_L003 unaligned CPTAC3 b33516d1-94be-41ed-9b6d-ed28b701b8c8 36af7c4f1348ad80a74183730d41e686 { 'aliquot_tag': 'ALQ_1c38ad49', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01808.RNA-Seq.R2_L004.T C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGAAA_S48_L004_R2_001.fastq.gz 3748221155 FASTQ R2_L004 unaligned CPTAC3 bbe46ce6-99dc-400d-9e4b-f4ec1fd4a1e8 1837e8fc15d27c9ad046835914317f2e { 'aliquot_tag': 'ALQ_a3081328', 'gdc_sample_type': 'Primary Tumor' } +C3N-01808.RNA-Seq.genomic.T.hg38 C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 cc06595d-3a36-4e6f-8c87-56321ed9051d.rna_seq.genomic.gdc_realn.bam 7425489211 BAM genomic harmonized CPTAC3 e24b40ac-3566-43d3-8348-f3f4bcd5b135 3a6811e88054e4e6ad9b9c22c8bdae3e { 'aliquot_tag': 'ALQ_a3081328', 'gdc_sample_type': 'Primary Tumor' } +C3N-01808.RNA-Seq.R1_L003.A C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 171205_UNC32-K00270_0069_BHN2HGBBXX_GGCTAC_S11_L003_R1_001.fastq.gz 4528881184 FASTQ R1_L003 unaligned CPTAC3 fdf08798-675e-478a-a72b-7b925d01a950 b158c9f6eb40258a0366711dee2e38fb { 'aliquot_tag': 'ALQ_1c38ad49', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-01808.RNA-Seq.R1_L004.T C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGAAA_S48_L004_R1_001.fastq.gz 3429150091 FASTQ R1_L004 unaligned CPTAC3 a71bea30-6a66-4c8f-b526-464c906f5b1a 0e876bccad6724217183d159d8ae7cf7 { 'aliquot_tag': 'ALQ_a3081328', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01808.RNA-Seq.R2_L003.A C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 171205_UNC32-K00270_0069_BHN2HGBBXX_GGCTAC_S11_L003_R2_001.fastq.gz 4993203081 FASTQ R2_L003 unaligned CPTAC3 b33516d1-94be-41ed-9b6d-ed28b701b8c8 36af7c4f1348ad80a74183730d41e686 { 'aliquot_tag': 'ALQ_1c38ad49', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-01808.RNA-Seq.R2_L004.T C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTGAAA_S48_L004_R2_001.fastq.gz 3748221155 FASTQ R2_L004 unaligned CPTAC3 bbe46ce6-99dc-400d-9e4b-f4ec1fd4a1e8 1837e8fc15d27c9ad046835914317f2e { 'aliquot_tag': 'ALQ_a3081328', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-01808.RNA-Seq.transcriptome.A.hg38 C3N-01808 CCRCC RNA-Seq tissue_normal CPT0089480006 8da659d6-76a1-41de-b45e-3be7a798389b.rna_seq.transcriptome.gdc_realn.bam 11783830498 BAM transcriptome harmonized CPTAC3 662ea23e-0f6c-4e34-ae65-eafd3ca4990b a220a3c44ab45dc068d66ac2a830ff03 { 'aliquot_tag': 'ALQ_1c38ad49', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01808.RNA-Seq.transcriptome.T.hg38 C3N-01808 CCRCC RNA-Seq tumor CPT0089460006 cc06595d-3a36-4e6f-8c87-56321ed9051d.rna_seq.transcriptome.gdc_realn.bam 9368332116 BAM transcriptome harmonized CPTAC3 ef3b6048-587e-4534-98e3-3488a26bbf52 5858575c4ec5bd3dbd0d560aa322bde8 { 'aliquot_tag': 'ALQ_a3081328', 'gdc_sample_type': 'Primary Tumor' } C3N-01808.WGS.A C3N-01808 CCRCC WGS tissue_normal CPT0089480009 CPT0089480009.WholeGenome.RP-1303.bam 51211838272 BAM aligned CPTAC3 4c2ffaed-95d3-4351-9812-0b51c23ea140 f1ff5d82942d6a8d967339a664495f0b { 'aliquot_tag': 'ALQ_8c87b0d8', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -27415,12 +29413,12 @@ C3N-01814.MethArray.Red.T C3N-01814 GBM Methylation Array tumor CPT0167860007 20 C3N-01814.miRNA-Seq.T C3N-01814 GBM miRNA-Seq tumor CPT0167860010 181119_UNC31-K00269_0165_AH27WCBBXY_CCAACA_S12_L001_R1_001.unaln.bam 202356121 BAM unaligned CPTAC3 a3a72840-c189-494e-a37d-ce09628f1499 ceba7da0290afa332b9d5f37442716fe { 'aliquot_tag': 'ALQ_767c3a0b', 'gdc_sample_type': 'Primary Tumor' } C3N-01814.miRNA-Seq.T.hg38 C3N-01814 GBM miRNA-Seq tumor CPT0167860010 acccee8e-c693-4054-a8cf-2d1d7044d36d_mirnaseq_gdc_realn.bam 223809970 BAM harmonized CPTAC3 1149da74-6730-4e2c-8e37-183e4f5ecf34 0df23abd09917e72dffc65244f55d540 { 'aliquot_tag': 'ALQ_767c3a0b', 'gdc_sample_type': 'Primary Tumor' } C3N-01814.RNA-Seq.chimeric.T.hg38 C3N-01814 GBM RNA-Seq tumor CPT0167860010 43eb433d-6b85-4aee-8ce2-d3faa8540fca.rna_seq.chimeric.gdc_realn.bam 35034193 BAM chimeric harmonized CPTAC3 5b155227-739c-48e7-baa8-d37b1ededead ffaf63bdb1cfbb9fb00edf0fc62017e5 { 'aliquot_tag': 'ALQ_767c3a0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01814.RNA-Seq.genomic.T.hg38 C3N-01814 GBM RNA-Seq tumor CPT0167860010 43eb433d-6b85-4aee-8ce2-d3faa8540fca.rna_seq.genomic.gdc_realn.bam 6783070433 BAM genomic harmonized CPTAC3 d6330d72-7677-4a74-97b6-71eabef92c37 1132bff343769a6d1c3d68733dca2776 { 'aliquot_tag': 'ALQ_767c3a0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01814.RNA-Seq.R1_L003.T C3N-01814 GBM RNA-Seq tumor CPT0167860010 180516_UNC31-K00269_0130_BHV22JBBXX_CTTGTA_S12_L003_R1_001.fastq.gz 3257766189 FASTQ R1_L003 unaligned CPTAC3 6e1afdd8-fa3d-4cd2-a8f9-1b1206045082 378bdc0f33fd7bba82c5857939f8ad51 { 'aliquot_tag': 'ALQ_767c3a0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01814.RNA-Seq.R2_L003.T C3N-01814 GBM RNA-Seq tumor CPT0167860010 180516_UNC31-K00269_0130_BHV22JBBXX_CTTGTA_S12_L003_R2_001.fastq.gz 3528721336 FASTQ R2_L003 unaligned CPTAC3 bf1337a9-d5ba-4ed0-a2d3-851e9dd52394 47a1fffa4f8a5fd01d7bc50cc619c458 { 'aliquot_tag': 'ALQ_767c3a0b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01814.RNA-Seq.genomic.T.hg38 C3N-01814 GBM RNA-Seq tumor CPT0167860010 43eb433d-6b85-4aee-8ce2-d3faa8540fca.rna_seq.genomic.gdc_realn.bam 6783070433 BAM genomic harmonized CPTAC3 e4d8bd43-301a-43e7-bdcf-e596a5cdd77a 1132bff343769a6d1c3d68733dca2776 { 'aliquot_tag': 'ALQ_767c3a0b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01814.RNA-Seq.R1_L003.T C3N-01814 GBM RNA-Seq tumor CPT0167860010 180516_UNC31-K00269_0130_BHV22JBBXX_CTTGTA_S12_L003_R1_001.fastq.gz 3257766189 FASTQ R1_L003 unaligned CPTAC3 6e1afdd8-fa3d-4cd2-a8f9-1b1206045082 378bdc0f33fd7bba82c5857939f8ad51 { 'aliquot_tag': 'ALQ_767c3a0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01814.RNA-Seq.R2_L003.T C3N-01814 GBM RNA-Seq tumor CPT0167860010 180516_UNC31-K00269_0130_BHV22JBBXX_CTTGTA_S12_L003_R2_001.fastq.gz 3528721336 FASTQ R2_L003 unaligned CPTAC3 bf1337a9-d5ba-4ed0-a2d3-851e9dd52394 47a1fffa4f8a5fd01d7bc50cc619c458 { 'aliquot_tag': 'ALQ_767c3a0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-01814.RNA-Seq.transcriptome.T.hg38 C3N-01814 GBM RNA-Seq tumor CPT0167860010 43eb433d-6b85-4aee-8ce2-d3faa8540fca.rna_seq.transcriptome.gdc_realn.bam 8974684972 BAM transcriptome harmonized CPTAC3 d5e89aea-2168-4690-8f83-cab477e46527 8389136677e3a76885d031f844e39643 { 'aliquot_tag': 'ALQ_767c3a0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01814.scRNA-Seq.R1_L003.T C3N-01814 GBM scRNA-Seq tumor CPT0167860015 20191112_WUSTL_CPT0167860015_TTTCATGA-ACGTCCCT-CGCATGTG-GAAGGAAC_S6_L003_R1_001.fastq.gz 14858049776 FASTQ R1_L003 unaligned CPTAC3 763a1b3e-68a5-4e4e-819a-aba30874cafc 1660259f8d5517f534bfc08e4167922e { 'aliquot_tag': 'ALQ_616ce84', 'gdc_sample_type': 'Primary Tumor' } -C3N-01814.scRNA-Seq.R2_L003.T C3N-01814 GBM scRNA-Seq tumor CPT0167860015 20191112_WUSTL_CPT0167860015_TTTCATGA-ACGTCCCT-CGCATGTG-GAAGGAAC_S6_L003_R2_001.fastq.gz 36982151357 FASTQ R2_L003 unaligned CPTAC3 ae555dfa-4a64-4170-a34f-3c6bf957775f 1be8e5e5a873a307ff11e6375561672e { 'aliquot_tag': 'ALQ_616ce84', 'gdc_sample_type': 'Primary Tumor' } +C3N-01814.scRNA-Seq.R1_L003.T C3N-01814 GBM scRNA-Seq tumor CPT0167860015 20191112_WUSTL_CPT0167860015_TTTCATGA-ACGTCCCT-CGCATGTG-GAAGGAAC_S6_L003_R1_001.fastq.gz 14858049776 FASTQ R1_L003 unaligned CPTAC3 763a1b3e-68a5-4e4e-819a-aba30874cafc 1660259f8d5517f534bfc08e4167922e { 'aliquot_tag': 'ALQ_616ce84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01814.scRNA-Seq.R2_L003.T C3N-01814 GBM scRNA-Seq tumor CPT0167860015 20191112_WUSTL_CPT0167860015_TTTCATGA-ACGTCCCT-CGCATGTG-GAAGGAAC_S6_L003_R2_001.fastq.gz 36982151357 FASTQ R2_L003 unaligned CPTAC3 ae555dfa-4a64-4170-a34f-3c6bf957775f 1be8e5e5a873a307ff11e6375561672e { 'aliquot_tag': 'ALQ_616ce84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-01814.scRNA-Seq.T.hg38 C3N-01814 GBM scRNA-Seq tumor CPT0167860015 possorted_genome_bam.bam 44015806134 BAM harmonized CPTAC3 9a142ba2-e139-404b-9ed2-94ee0d7ea463 f3b13bc4e81a4e5a7a799b6c5b703835 { 'aliquot_tag': 'ALQ_616ce84', 'gdc_sample_type': 'Primary Tumor' } C3N-01814.WGS.N C3N-01814 GBM WGS blood_normal CPT0167920004 CPT0167920004.WholeGenome.RP-1303.bam 53609130596 BAM aligned CPTAC3 6f71568a-9f40-4fc8-9e40-4792ea5434e4 5b641d011aed816daf49372d778c22a2 { 'aliquot_tag': 'ALQ_56d6ba36', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01814.WGS.N.hg38 C3N-01814 GBM WGS blood_normal CPT0167920004 05e1c388-5dbe-44bd-8309-474ce6854f2a_wgs_gdc_realn.bam 76750989332 BAM harmonized CPTAC3 e7f7509e-0375-4e1c-a22c-b5ba92fa02cd a990577030ee889b373300ec62249a48 { 'aliquot_tag': 'ALQ_56d6ba36', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27435,12 +29433,12 @@ C3N-01815.MethArray.Red.T C3N-01815 GBM Methylation Array tumor CPT0167970006 20 C3N-01815.miRNA-Seq.T C3N-01815 GBM miRNA-Seq tumor CPT0167970009 181119_UNC31-K00269_0165_AH27WCBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 290368226 BAM unaligned CPTAC3 0cbed0e7-f4a5-4fed-b366-ab98cc25fd85 9e2b16e46848b9fddb4190903511c415 { 'aliquot_tag': 'ALQ_e08749fb', 'gdc_sample_type': 'Primary Tumor' } C3N-01815.miRNA-Seq.T.hg38 C3N-01815 GBM miRNA-Seq tumor CPT0167970009 d3c083c4-a134-4fa7-9f8d-3d5219c3e837_mirnaseq_gdc_realn.bam 319369751 BAM harmonized CPTAC3 a6697001-3536-43e1-9960-8d1a25d81459 7d8ae2fb0ec3f3a13366d28960ce2bb0 { 'aliquot_tag': 'ALQ_e08749fb', 'gdc_sample_type': 'Primary Tumor' } C3N-01815.RNA-Seq.chimeric.T.hg38 C3N-01815 GBM RNA-Seq tumor CPT0167970009 c3f20523-ca78-45ef-a3fb-185155bf5fdd.rna_seq.chimeric.gdc_realn.bam 31112716 BAM chimeric harmonized CPTAC3 a7808f2a-a56c-4cd9-a9b0-c59ce0841549 b3d17ba9c37a0cf7d9e9acb7f282aa97 { 'aliquot_tag': 'ALQ_e08749fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01815.RNA-Seq.genomic.T.hg38 C3N-01815 GBM RNA-Seq tumor CPT0167970009 c3f20523-ca78-45ef-a3fb-185155bf5fdd.rna_seq.genomic.gdc_realn.bam 9660512804 BAM genomic harmonized CPTAC3 3b7d3094-bcd2-4428-8294-f404dae34149 d6842f1c8fb277b8e115c25446283aa3 { 'aliquot_tag': 'ALQ_e08749fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01815.RNA-Seq.R1_L002.T C3N-01815 GBM RNA-Seq tumor CPT0167970009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L002_R1_001.fastq.gz 4365117694 FASTQ R1_L002 unaligned CPTAC3 44da4b86-b09e-49fc-a36a-e2651a289532 1e300e73fa80c169718ca131840631c0 { 'aliquot_tag': 'ALQ_e08749fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01815.RNA-Seq.R2_L002.T C3N-01815 GBM RNA-Seq tumor CPT0167970009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L002_R2_001.fastq.gz 4718126134 FASTQ R2_L002 unaligned CPTAC3 4e0cc165-8e13-4d78-949d-51cd14172790 5efcd418ae3463e36da2160c58462b90 { 'aliquot_tag': 'ALQ_e08749fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-01815.RNA-Seq.genomic.T.hg38 C3N-01815 GBM RNA-Seq tumor CPT0167970009 c3f20523-ca78-45ef-a3fb-185155bf5fdd.rna_seq.genomic.gdc_realn.bam 9660512804 BAM genomic harmonized CPTAC3 74529f5d-f7e6-436f-b70e-ae79299a619c d6842f1c8fb277b8e115c25446283aa3 { 'aliquot_tag': 'ALQ_e08749fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-01815.RNA-Seq.R1_L002.T C3N-01815 GBM RNA-Seq tumor CPT0167970009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L002_R1_001.fastq.gz 4365117694 FASTQ R1_L002 unaligned CPTAC3 44da4b86-b09e-49fc-a36a-e2651a289532 1e300e73fa80c169718ca131840631c0 { 'aliquot_tag': 'ALQ_e08749fb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01815.RNA-Seq.R2_L002.T C3N-01815 GBM RNA-Seq tumor CPT0167970009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTCAA_S5_L002_R2_001.fastq.gz 4718126134 FASTQ R2_L002 unaligned CPTAC3 4e0cc165-8e13-4d78-949d-51cd14172790 5efcd418ae3463e36da2160c58462b90 { 'aliquot_tag': 'ALQ_e08749fb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-01815.RNA-Seq.transcriptome.T.hg38 C3N-01815 GBM RNA-Seq tumor CPT0167970009 c3f20523-ca78-45ef-a3fb-185155bf5fdd.rna_seq.transcriptome.gdc_realn.bam 12245008309 BAM transcriptome harmonized CPTAC3 89cf69bb-c697-410f-9533-2f5d10c77e04 1efd5232c1864820f952c509a4dd60b1 { 'aliquot_tag': 'ALQ_e08749fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-01815.scRNA-Seq.R1_L003.T C3N-01815 GBM scRNA-Seq tumor CPT0167970014 20191218_WUSTL_CPT0167970014_ACAGAGGT-TATAGTTG-CGGTCCCA-GTCCTAAC_S1_L003_R1_001.fastq.gz 11428500305 FASTQ R1_L003 unaligned CPTAC3 b74fa3fd-3586-4a83-8fde-e4501100df58 1abfbe08aa8a7dfe2991a264f8a37bb3 { 'aliquot_tag': 'ALQ_872d0407', 'gdc_sample_type': 'Primary Tumor' } -C3N-01815.scRNA-Seq.R2_L003.T C3N-01815 GBM scRNA-Seq tumor CPT0167970014 20191218_WUSTL_CPT0167970014_ACAGAGGT-TATAGTTG-CGGTCCCA-GTCCTAAC_S1_L003_R2_001.fastq.gz 27122742441 FASTQ R2_L003 unaligned CPTAC3 19bf5a8b-a0e8-4b5e-8d97-8f221f992be2 a1a1da8461c5793b0e39873bb669ba3b { 'aliquot_tag': 'ALQ_872d0407', 'gdc_sample_type': 'Primary Tumor' } +C3N-01815.scRNA-Seq.R1_L003.T C3N-01815 GBM scRNA-Seq tumor CPT0167970014 20191218_WUSTL_CPT0167970014_ACAGAGGT-TATAGTTG-CGGTCCCA-GTCCTAAC_S1_L003_R1_001.fastq.gz 11428500305 FASTQ R1_L003 unaligned CPTAC3 b74fa3fd-3586-4a83-8fde-e4501100df58 1abfbe08aa8a7dfe2991a264f8a37bb3 { 'aliquot_tag': 'ALQ_872d0407', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01815.scRNA-Seq.R2_L003.T C3N-01815 GBM scRNA-Seq tumor CPT0167970014 20191218_WUSTL_CPT0167970014_ACAGAGGT-TATAGTTG-CGGTCCCA-GTCCTAAC_S1_L003_R2_001.fastq.gz 27122742441 FASTQ R2_L003 unaligned CPTAC3 19bf5a8b-a0e8-4b5e-8d97-8f221f992be2 a1a1da8461c5793b0e39873bb669ba3b { 'aliquot_tag': 'ALQ_872d0407', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-01815.scRNA-Seq.T.hg38 C3N-01815 GBM scRNA-Seq tumor CPT0167970014 possorted_genome_bam.bam 31798102492 BAM harmonized CPTAC3 97a21536-05ef-4299-a499-6ebe3b549d7e be0cb592ec948f3f2af87a839258f967 { 'aliquot_tag': 'ALQ_872d0407', 'gdc_sample_type': 'Primary Tumor' } C3N-01815.WGS.N C3N-01815 GBM WGS blood_normal CPT0168030004 CPT0168030004.WholeGenome.RP-1303.bam 58495170426 BAM aligned CPTAC3 ef61a326-08b5-435b-b40f-6d5b25c5fd95 05699362dfd59f8dd50171b5c89bb379 { 'aliquot_tag': 'ALQ_baf1b2a7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01815.WGS.N.hg38 C3N-01815 GBM WGS blood_normal CPT0168030004 f3005199-2091-4c0e-9eb7-003fc235563b_wgs_gdc_realn.bam 85488812992 BAM harmonized CPTAC3 3871bd67-8f7f-4779-836f-244104dcfd7d 002b0d8eb80aa96fba51a95c9020602b { 'aliquot_tag': 'ALQ_baf1b2a7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27455,12 +29453,12 @@ C3N-01816.MethArray.Red.T C3N-01816 GBM Methylation Array tumor CPT0168080006 20 C3N-01816.miRNA-Seq.T C3N-01816 GBM miRNA-Seq tumor CPT0168080009 181119_UNC31-K00269_0165_AH27WCBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 197541354 BAM unaligned CPTAC3 e3677e53-b4f1-4048-bdbc-a3e41dcbcde4 1c940f78b7f149bbfedf70fd9ecc1397 { 'aliquot_tag': 'ALQ_b390ff0b', 'gdc_sample_type': 'Primary Tumor' } C3N-01816.miRNA-Seq.T.hg38 C3N-01816 GBM miRNA-Seq tumor CPT0168080009 394cad9e-041f-412a-92d1-e0141e3ebca3_mirnaseq_gdc_realn.bam 215575648 BAM harmonized CPTAC3 105ccb4b-9176-4ed9-bbf6-018ad0b2f759 8fc3dc8b2a8de6c46a5ace8a96b77ae5 { 'aliquot_tag': 'ALQ_b390ff0b', 'gdc_sample_type': 'Primary Tumor' } C3N-01816.RNA-Seq.chimeric.T.hg38 C3N-01816 GBM RNA-Seq tumor CPT0168080009 db8e4fa4-97df-4b38-92eb-4c1a048e720e.rna_seq.chimeric.gdc_realn.bam 29175824 BAM chimeric harmonized CPTAC3 2d3fd6a8-a502-4702-a5ac-cdc571a266ff 95340004fc903e99606295ede22e8544 { 'aliquot_tag': 'ALQ_b390ff0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01816.RNA-Seq.genomic.T.hg38 C3N-01816 GBM RNA-Seq tumor CPT0168080009 db8e4fa4-97df-4b38-92eb-4c1a048e720e.rna_seq.genomic.gdc_realn.bam 9014057387 BAM genomic harmonized CPTAC3 214e9519-9b9d-43f5-a482-8cdfff7aad84 816a5e12fb2ff18a2ef08bb2bae86acd { 'aliquot_tag': 'ALQ_b390ff0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01816.RNA-Seq.R1_L002.T C3N-01816 GBM RNA-Seq tumor CPT0168080009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L002_R1_001.fastq.gz 4266443871 FASTQ R1_L002 unaligned CPTAC3 d4c2e7c6-bb6b-485e-8d1e-08fe07af549c 63014661469f791d6d34f8d928c76dcc { 'aliquot_tag': 'ALQ_b390ff0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01816.RNA-Seq.R2_L002.T C3N-01816 GBM RNA-Seq tumor CPT0168080009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L002_R2_001.fastq.gz 4629196221 FASTQ R2_L002 unaligned CPTAC3 c37234b3-f608-4174-a9fd-a03511073262 11f74064b03ae68a012ee822f02eae39 { 'aliquot_tag': 'ALQ_b390ff0b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01816.RNA-Seq.genomic.T.hg38 C3N-01816 GBM RNA-Seq tumor CPT0168080009 db8e4fa4-97df-4b38-92eb-4c1a048e720e.rna_seq.genomic.gdc_realn.bam 9014057387 BAM genomic harmonized CPTAC3 c578577f-6f18-48a7-b092-00d76bedaa50 816a5e12fb2ff18a2ef08bb2bae86acd { 'aliquot_tag': 'ALQ_b390ff0b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01816.RNA-Seq.R1_L002.T C3N-01816 GBM RNA-Seq tumor CPT0168080009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L002_R1_001.fastq.gz 4266443871 FASTQ R1_L002 unaligned CPTAC3 d4c2e7c6-bb6b-485e-8d1e-08fe07af549c 63014661469f791d6d34f8d928c76dcc { 'aliquot_tag': 'ALQ_b390ff0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01816.RNA-Seq.R2_L002.T C3N-01816 GBM RNA-Seq tumor CPT0168080009 180516_UNC31-K00269_0130_BHV22JBBXX_AGTTCC_S6_L002_R2_001.fastq.gz 4629196221 FASTQ R2_L002 unaligned CPTAC3 c37234b3-f608-4174-a9fd-a03511073262 11f74064b03ae68a012ee822f02eae39 { 'aliquot_tag': 'ALQ_b390ff0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-01816.RNA-Seq.transcriptome.T.hg38 C3N-01816 GBM RNA-Seq tumor CPT0168080009 db8e4fa4-97df-4b38-92eb-4c1a048e720e.rna_seq.transcriptome.gdc_realn.bam 12961390945 BAM transcriptome harmonized CPTAC3 54f71eca-5f00-4290-8cc2-0ce2df637b7b 4a9a7c415d7fba7bbfc6223fe8ad1e4c { 'aliquot_tag': 'ALQ_b390ff0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01816.scRNA-Seq.R1_L003.T C3N-01816 GBM scRNA-Seq tumor CPT0168080014 20200608_WUSTL_CPT0168080014_AGGCTACC-CTAGCTGT-GCCAACAA-TATTGGTG_S1_L003_R1_001.fastq.gz 9910411370 FASTQ R1_L003 unaligned CPTAC3 29127cc1-d844-4345-9bf5-d1844e1c2c70 afd2e3f2bd7f203ae697f374657c61ad { 'aliquot_tag': 'ALQ_d43ab2f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01816.scRNA-Seq.R2_L003.T C3N-01816 GBM scRNA-Seq tumor CPT0168080014 20200608_WUSTL_CPT0168080014_AGGCTACC-CTAGCTGT-GCCAACAA-TATTGGTG_S1_L003_R2_001.fastq.gz 24642737722 FASTQ R2_L003 unaligned CPTAC3 a4e613cb-85fc-4ecc-8f13-af9809e13f88 6434cd1f75bb00d9adc103d303e770b8 { 'aliquot_tag': 'ALQ_d43ab2f7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01816.scRNA-Seq.R1_L003.T C3N-01816 GBM scRNA-Seq tumor CPT0168080014 20200608_WUSTL_CPT0168080014_AGGCTACC-CTAGCTGT-GCCAACAA-TATTGGTG_S1_L003_R1_001.fastq.gz 9910411370 FASTQ R1_L003 unaligned CPTAC3 29127cc1-d844-4345-9bf5-d1844e1c2c70 afd2e3f2bd7f203ae697f374657c61ad { 'aliquot_tag': 'ALQ_d43ab2f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01816.scRNA-Seq.R2_L003.T C3N-01816 GBM scRNA-Seq tumor CPT0168080014 20200608_WUSTL_CPT0168080014_AGGCTACC-CTAGCTGT-GCCAACAA-TATTGGTG_S1_L003_R2_001.fastq.gz 24642737722 FASTQ R2_L003 unaligned CPTAC3 a4e613cb-85fc-4ecc-8f13-af9809e13f88 6434cd1f75bb00d9adc103d303e770b8 { 'aliquot_tag': 'ALQ_d43ab2f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-01816.scRNA-Seq.T.hg38 C3N-01816 GBM scRNA-Seq tumor CPT0168080014 possorted_genome_bam.bam 30045096155 BAM harmonized CPTAC3 779821e7-a1f6-4d1f-8ced-b9e338552da3 ef3503a94ea6bc5d6d51235dec8e9b05 { 'aliquot_tag': 'ALQ_d43ab2f7', 'gdc_sample_type': 'Primary Tumor' } C3N-01816.WGS.N C3N-01816 GBM WGS blood_normal CPT0168120002 CPT0168120002.WholeGenome.RP-1303.bam 62511736580 BAM aligned CPTAC3 0301404e-c1d2-44f0-a649-ae43d93119e1 1295d8161fb2e1d42a380d0278fb30d7 { 'aliquot_tag': 'ALQ_a5aeed87', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01816.WGS.N.hg38 C3N-01816 GBM WGS blood_normal CPT0168120002 0582feca-5f76-4ca8-99a1-2183174f62a9_wgs_gdc_realn.bam 91027023070 BAM harmonized CPTAC3 96df1f35-0652-480a-90cf-9b4e184b5fa3 ca391ba69c0b6ef9b2169aacb744b1cb { 'aliquot_tag': 'ALQ_a5aeed87', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27477,9 +29475,9 @@ C3N-01818.MethArray.Red.T C3N-01818 GBM Methylation Array tumor CPT0168270006 20 C3N-01818.miRNA-Seq.T C3N-01818 GBM miRNA-Seq tumor CPT0168270009 181119_UNC31-K00269_0165_AH27WCBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 158294814 BAM unaligned CPTAC3 6fa3e85c-336a-4f18-9664-d70307d7e95e 77fb240e79cd97e9cda2fa29631dfd79 { 'aliquot_tag': 'ALQ_7c08c9d1', 'gdc_sample_type': 'Primary Tumor' } C3N-01818.miRNA-Seq.T.hg38 C3N-01818 GBM miRNA-Seq tumor CPT0168270009 ab508430-747f-415e-b88b-f16c15b8cf34_mirnaseq_gdc_realn.bam 178307549 BAM harmonized CPTAC3 86de9b06-e632-4289-8bc9-da931ec12172 570ee27c5db9a4868fd206b4aea6e53a { 'aliquot_tag': 'ALQ_7c08c9d1', 'gdc_sample_type': 'Primary Tumor' } C3N-01818.RNA-Seq.chimeric.T.hg38 C3N-01818 GBM RNA-Seq tumor CPT0168270009 e3c96dfa-2889-46b7-a3ae-f56db7f6c741.rna_seq.chimeric.gdc_realn.bam 28862010 BAM chimeric harmonized CPTAC3 bfb3ad39-3058-4efe-96be-bf3537da36a6 4689bd55829033af91c9e3bf45602aac { 'aliquot_tag': 'ALQ_7c08c9d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01818.RNA-Seq.genomic.T.hg38 C3N-01818 GBM RNA-Seq tumor CPT0168270009 e3c96dfa-2889-46b7-a3ae-f56db7f6c741.rna_seq.genomic.gdc_realn.bam 7548885177 BAM genomic harmonized CPTAC3 dcc3dd31-367d-49b6-8ff2-7c152d28da30 2190e1d6aa2e7fab2cf04d96bafaf27d { 'aliquot_tag': 'ALQ_7c08c9d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01818.RNA-Seq.R1_L002.T C3N-01818 GBM RNA-Seq tumor CPT0168270009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 3317624857 FASTQ R1_L002 unaligned CPTAC3 b0e38c05-ac09-4c1c-bb1d-b548599b093b 5870a6a75630d031833ec7ecd6546669 { 'aliquot_tag': 'ALQ_7c08c9d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01818.RNA-Seq.R2_L002.T C3N-01818 GBM RNA-Seq tumor CPT0168270009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 3421335754 FASTQ R2_L002 unaligned CPTAC3 71ab0297-dec9-45f2-a48a-37d19aa41426 d78e787d39da177126fdd68bd303e584 { 'aliquot_tag': 'ALQ_7c08c9d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01818.RNA-Seq.genomic.T.hg38 C3N-01818 GBM RNA-Seq tumor CPT0168270009 e3c96dfa-2889-46b7-a3ae-f56db7f6c741.rna_seq.genomic.gdc_realn.bam 7548885177 BAM genomic harmonized CPTAC3 b30b0ae8-48bf-4a91-81bf-dfb300f064bc 2190e1d6aa2e7fab2cf04d96bafaf27d { 'aliquot_tag': 'ALQ_7c08c9d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01818.RNA-Seq.R1_L002.T C3N-01818 GBM RNA-Seq tumor CPT0168270009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 3317624857 FASTQ R1_L002 unaligned CPTAC3 b0e38c05-ac09-4c1c-bb1d-b548599b093b 5870a6a75630d031833ec7ecd6546669 { 'aliquot_tag': 'ALQ_7c08c9d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01818.RNA-Seq.R2_L002.T C3N-01818 GBM RNA-Seq tumor CPT0168270009 180516_UNC31-K00269_0130_BHV22JBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 3421335754 FASTQ R2_L002 unaligned CPTAC3 71ab0297-dec9-45f2-a48a-37d19aa41426 d78e787d39da177126fdd68bd303e584 { 'aliquot_tag': 'ALQ_7c08c9d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-01818.RNA-Seq.transcriptome.T.hg38 C3N-01818 GBM RNA-Seq tumor CPT0168270009 e3c96dfa-2889-46b7-a3ae-f56db7f6c741.rna_seq.transcriptome.gdc_realn.bam 10323609348 BAM transcriptome harmonized CPTAC3 f94ae69a-d34e-4f2a-a5a7-3263ae2e7f51 c55f76c592897f82ce33be7d43c8e2ae { 'aliquot_tag': 'ALQ_7c08c9d1', 'gdc_sample_type': 'Primary Tumor' } C3N-01818.WGS.N C3N-01818 GBM WGS blood_normal CPT0168320002 CPT0168320002.WholeGenome.RP-1303.bam 58347178726 BAM aligned CPTAC3 42569fa7-e7fe-4002-bd5f-9ed5af859700 8bacd5c98dd00e8df015d6a3d4375204 { 'aliquot_tag': 'ALQ_e8664c8c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01818.WGS.N.hg38 C3N-01818 GBM WGS blood_normal CPT0168320002 bd504223-27b1-4c70-af68-6985b7e5d23b_wgs_gdc_realn.bam 85455169092 BAM harmonized CPTAC3 177f02b8-d8fc-4da9-9619-411582a25cd7 286b6bf1205fdecd9ec023c6589f87d3 { 'aliquot_tag': 'ALQ_e8664c8c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27493,11 +29491,11 @@ C3N-01821.MethArray.Green.T C3N-01821 UCEC Methylation Array tumor CPT0133040011 C3N-01821.MethArray.Red.T C3N-01821 UCEC Methylation Array tumor CPT0133040011 203561620054_R03C01_Red.idat 13676231 IDAT Red NA CPTAC3 e75b2039-41fc-4447-b96c-4b30113159c6 b5b04c6fa50e67a8f7500808f906a657 { 'aliquot_tag': 'ALQ_2b47f1e7', 'gdc_sample_type': 'Primary Tumor' } C3N-01821.miRNA-Seq.T C3N-01821 UCEC miRNA-Seq tumor CPT0133040018 190508_UNC31-K00269_0215_BH7FYKBBXY_CTAGCT_S38_L004_R1_001.unaln.bam 235632427 BAM unaligned CPTAC3 e63f3d02-498d-4d30-a011-af6ce6fbed4e db59d85ff58917c13f1cf1b27e12a93f { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor' } C3N-01821.miRNA-Seq.T.hg38 C3N-01821 UCEC miRNA-Seq tumor CPT0133040018 965474a9-0537-427a-ac19-670c7400bfe5_mirnaseq_gdc_realn.bam 263164994 BAM harmonized CPTAC3 88ea51e2-e176-42bf-bc8a-c0f1325688d8 5369a77e303864ca3b451ae2b0b75899 { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor' } -C3N-01821.RNA-Seq.chimeric.T.hg38 C3N-01821 UCEC RNA-Seq tumor CPT0133040018 f967f049-77a0-4ed4-8791-03a0610c6e5b.rna_seq.chimeric.gdc_realn.bam 39128735 BAM chimeric harmonized CPTAC3 9ca9eb8a-9565-4b39-9178-b255c70c7544 4a87a141c3569021c2161fe1628759e9 { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor' } -C3N-01821.RNA-Seq.genomic.T.hg38 C3N-01821 UCEC RNA-Seq tumor CPT0133040018 f967f049-77a0-4ed4-8791-03a0610c6e5b.rna_seq.genomic.gdc_realn.bam 9266595403 BAM genomic harmonized CPTAC3 cbc85a4f-100c-4513-9935-88b377f4f5d6 dfca451f347f4c5dda7cebae53a6e625 { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor' } -C3N-01821.RNA-Seq.R1_L001.T C3N-01821 UCEC RNA-Seq tumor CPT0133040018 190523_UNC32-K00270_0176_BH7CW7BBXY_GAACCGCG-TGACCTTA_S2_L001_R1_001.fastq.gz 4480804902 FASTQ R1_L001 unaligned CPTAC3 a42caea4-5690-4fe0-964d-404fa782f7e1 b686cec3430cfdc63aecad801a83164e { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor' } -C3N-01821.RNA-Seq.R2_L001.T C3N-01821 UCEC RNA-Seq tumor CPT0133040018 190523_UNC32-K00270_0176_BH7CW7BBXY_GAACCGCG-TGACCTTA_S2_L001_R2_001.fastq.gz 5117426385 FASTQ R2_L001 unaligned CPTAC3 4a51f5c6-21d6-4b8a-b9c8-1cf58c74ca75 4ebda1cba32a716d1c2e1b24426a505e { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor' } -C3N-01821.RNA-Seq.transcriptome.T.hg38 C3N-01821 UCEC RNA-Seq tumor CPT0133040018 f967f049-77a0-4ed4-8791-03a0610c6e5b.rna_seq.transcriptome.gdc_realn.bam 8906738913 BAM transcriptome harmonized CPTAC3 e84b5a54-f7e6-469e-91f0-2fab2d2d05a8 577889a443bcc312d029b5c4f851a4a2 { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor' } +C3N-01821.RNA-Seq.chimeric.T.hg38 C3N-01821 UCEC RNA-Seq tumor CPT0133040018 738f68cd-de21-4bd3-aead-fdd03c121858.rna_seq.chimeric.gdc_realn.bam 39122224 BAM chimeric harmonized CPTAC3 4247f7f0-ccee-4100-a945-b0498d6a5ead 47c92ec4cb7bd0d41b3de6fe68f13708 { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor' } +C3N-01821.RNA-Seq.genomic.T.hg38 C3N-01821 UCEC RNA-Seq tumor CPT0133040018 738f68cd-de21-4bd3-aead-fdd03c121858.rna_seq.genomic.gdc_realn.bam 9267644613 BAM genomic harmonized CPTAC3 fcedd8bd-9801-4c7b-a23f-8f8311ede3c8 8afe8c242964d41c1287afc7b03540bc { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor' } +C3N-01821.RNA-Seq.R1_L001.T C3N-01821 UCEC RNA-Seq tumor CPT0133040018 190523_UNC32-K00270_0176_BH7CW7BBXY_GAACCGCG-TGACCTTA_S2_L001_R1_001.fastq.gz 4480804902 FASTQ R1_L001 unaligned CPTAC3 a42caea4-5690-4fe0-964d-404fa782f7e1 b686cec3430cfdc63aecad801a83164e { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01821.RNA-Seq.R2_L001.T C3N-01821 UCEC RNA-Seq tumor CPT0133040018 190523_UNC32-K00270_0176_BH7CW7BBXY_GAACCGCG-TGACCTTA_S2_L001_R2_001.fastq.gz 5117426385 FASTQ R2_L001 unaligned CPTAC3 4a51f5c6-21d6-4b8a-b9c8-1cf58c74ca75 4ebda1cba32a716d1c2e1b24426a505e { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01821.RNA-Seq.transcriptome.T.hg38 C3N-01821 UCEC RNA-Seq tumor CPT0133040018 738f68cd-de21-4bd3-aead-fdd03c121858.rna_seq.transcriptome.gdc_realn.bam 10293151449 BAM transcriptome harmonized CPTAC3 99575805-4bf6-4fb3-9673-9b492fa2f3ac d2145a4e8d8f063f495ea572fed22ea3 { 'aliquot_tag': 'ALQ_529b4943', 'gdc_sample_type': 'Primary Tumor' } C3N-01821.WGS.N C3N-01821 UCEC WGS blood_normal CPT0133160002 CPT0133160002.WholeGenome.RP-1303.bam 59396703134 BAM aligned CPTAC3 c3adb271-1e68-4c33-b600-6d08e0861543 cd46aa413882ff8af9bbd6de2584cd39 { 'aliquot_tag': 'ALQ_1ac911d9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01821.WGS.N.hg38 C3N-01821 UCEC WGS blood_normal CPT0133160002 eef72e7e-aa67-428b-a43f-a7d6dd477c24_wgs_gdc_realn.bam 88495885754 BAM harmonized CPTAC3 65d9870e-b4d3-41dd-97ac-c15fb7282101 328e9e41a7bb850322216ace9d80a94d { 'aliquot_tag': 'ALQ_1ac911d9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01821.WGS.T C3N-01821 UCEC WGS tumor CPT0133040011 CPT0133040011.WholeGenome.RP-1303.bam 72027207330 BAM aligned CPTAC3 ef1b9927-d25b-440b-8cc8-a06424511608 94e51479f6908467b7b7881c34dfee52 { 'aliquot_tag': 'ALQ_2b47f1e7', 'gdc_sample_type': 'Primary Tumor' } @@ -27507,6 +29505,7 @@ C3N-01821.WXS.N.hg38 C3N-01821 UCEC WXS blood_normal CPT0133160002 eef72e7e-aa67 C3N-01821.WXS.T C3N-01821 UCEC WXS tumor CPT0133040011 CPT0133040011.WholeExome.RP-1303.bam 26820504055 BAM aligned CPTAC3 aff3eadc-39bd-4275-a730-27c77ef4e036 39a86479a8ee3ddcebf1a50d0e11e4f2 { 'aliquot_tag': 'ALQ_2b47f1e7', 'gdc_sample_type': 'Primary Tumor' } C3N-01821.WXS.T.hg38 C3N-01821 UCEC WXS tumor CPT0133040011 b6fa685c-2f54-4665-b7b2-2c9b9186db2c_wxs_gdc_realn.bam 37768979843 BAM harmonized CPTAC3 5ccd6919-dfe3-4b41-b80b-629b1d91b264 86f0814b635b96a4ed581e308471e863 { 'aliquot_tag': 'ALQ_2b47f1e7', 'gdc_sample_type': 'Primary Tumor' } C3N-01823.DUP_dd07c2ca.WGS.T C3N-01823 LUAD WGS tumor CPT0097580009_2 CPT0097580009_2.WholeGenome.RP-2158.bam 134032338146 BAM aligned CPTAC3 8fdb4ec5-f98e-4fd7-b553-d9cc80b1668f aa7468fb7a84321d94b73512d8982b00 { 'aliquot_tag': 'DUP_dd07c2ca', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot' } +C3N-01823.DUP_dd07c2ca.WGS.T.hg38 C3N-01823 LUAD WGS tumor CPT0097580009_2 4b3eaa1b-75c8-4d1b-b55c-e89259775691_wgs_gdc_realn.bam 414312666920 BAM harmonized CPTAC3 09cab192-1185-4bd1-96ac-5367deee2a5d 4da2729daaa14e2803c3fe0334bd4304 { 'aliquot_tag': 'DUP_dd07c2ca', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'This entity was not yet authorized to be released by the submitters;Duplicate item: Supplementary DNA Aliquot' } C3N-01823.MethArray.Green.A C3N-01823 LUAD Methylation Array tissue_normal CPT0097600009 203027390113_R05C01_Grn.idat 13676246 IDAT Green NA CPTAC3 509ee701-0c21-43df-91ae-639f9ac26949 83f25435b7efbfe27f65bc68ce1add51 { 'aliquot_tag': 'ALQ_6daa21d1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01823.MethArray.Green.T C3N-01823 LUAD Methylation Array tumor CPT0097580009 202234380099_R01C01_Grn.idat 13676231 IDAT Green NA CPTAC3 a9d223e8-ecf4-4224-ada9-b997b22d90cd eafe63ef2855149f2a321b787bcec04a { 'aliquot_tag': 'ALQ_db4e18be', 'gdc_sample_type': 'Primary Tumor' } C3N-01823.MethArray.Red.A C3N-01823 LUAD Methylation Array tissue_normal CPT0097600009 203027390113_R05C01_Red.idat 13676246 IDAT Red NA CPTAC3 1d79c083-5d16-4660-8b42-091f086f9305 a0a890e789eed03f20b940d6e9ac679c { 'aliquot_tag': 'ALQ_6daa21d1', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -27518,11 +29517,11 @@ C3N-01823.miRNA-Seq.T.hg38 C3N-01823 LUAD miRNA-Seq tumor CPT0097580006 374db546 C3N-01823.RNA-Seq.chimeric.A.hg38 C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 e2447ae0-cb00-4bc4-a909-8660ff188824.rna_seq.chimeric.gdc_realn.bam 53168861 BAM chimeric harmonized CPTAC3 7ca06133-108d-45c0-8b0c-851307c6a56f 40213ed797ed03985b7bb85c22a54400 { 'aliquot_tag': 'ALQ_fd153c40', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01823.RNA-Seq.chimeric.T.hg38 C3N-01823 LUAD RNA-Seq tumor CPT0097580006 371432fb-514a-4ff5-9a90-52f6aeeafc74.rna_seq.chimeric.gdc_realn.bam 85947326 BAM chimeric harmonized CPTAC3 fd50171e-9172-4a8c-8b79-dcc5198d9480 f3469bde8f6c8534243567486c9d9d1d { 'aliquot_tag': 'ALQ_4bf1052f', 'gdc_sample_type': 'Primary Tumor' } C3N-01823.RNA-Seq.genomic.A.hg38 C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 e2447ae0-cb00-4bc4-a909-8660ff188824.rna_seq.genomic.gdc_realn.bam 7170292717 BAM genomic harmonized CPTAC3 ff1ee818-3c64-49aa-bfdc-6cfafa2860a2 06d5ffaf777a149899623e433877a4be { 'aliquot_tag': 'ALQ_fd153c40', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01823.RNA-Seq.genomic.T.hg38 C3N-01823 LUAD RNA-Seq tumor CPT0097580006 371432fb-514a-4ff5-9a90-52f6aeeafc74.rna_seq.genomic.gdc_realn.bam 10559177157 BAM genomic harmonized CPTAC3 12e06b3d-340c-4e9c-9425-46a65a34a97c 49da90a24dcea13eb14bbc26a7fd0565 { 'aliquot_tag': 'ALQ_4bf1052f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01823.RNA-Seq.R1_L001.A C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L001_R1_001.fastq.gz 3258528387 FASTQ R1_L001 unaligned CPTAC3 a3a8c329-94a6-46c4-8fc3-a1cea064d903 49f7d6dff89b9368d2b3fb4e13524397 { 'aliquot_tag': 'ALQ_fd153c40', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01823.RNA-Seq.R1_L006.T C3N-01823 LUAD RNA-Seq tumor CPT0097580006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L006_R1_001.fastq.gz 4598764700 FASTQ R1_L006 unaligned CPTAC3 5b45d19d-bdea-4e24-a7d7-7295f8f0781a 4a1f6f912d19519b15052b7d369eb2d2 { 'aliquot_tag': 'ALQ_4bf1052f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01823.RNA-Seq.R2_L001.A C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L001_R2_001.fastq.gz 3613132571 FASTQ R2_L001 unaligned CPTAC3 7973b618-d910-42da-9305-4c328f719b2e 036e16a07ad829442a0d4fa91a81a453 { 'aliquot_tag': 'ALQ_fd153c40', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01823.RNA-Seq.R2_L006.T C3N-01823 LUAD RNA-Seq tumor CPT0097580006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L006_R2_001.fastq.gz 5141440090 FASTQ R2_L006 unaligned CPTAC3 66f370eb-13cf-488f-b531-111714b86e96 9ece3c7276c5c49e23aa93f8538aa8d3 { 'aliquot_tag': 'ALQ_4bf1052f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01823.RNA-Seq.genomic.T.hg38 C3N-01823 LUAD RNA-Seq tumor CPT0097580006 371432fb-514a-4ff5-9a90-52f6aeeafc74.rna_seq.genomic.gdc_realn.bam 10559177157 BAM genomic harmonized CPTAC3 35ee6f05-409f-4b1f-a0ce-714856c5ed61 49da90a24dcea13eb14bbc26a7fd0565 { 'aliquot_tag': 'ALQ_4bf1052f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01823.RNA-Seq.R1_L001.A C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L001_R1_001.fastq.gz 3258528387 FASTQ R1_L001 unaligned CPTAC3 a3a8c329-94a6-46c4-8fc3-a1cea064d903 49f7d6dff89b9368d2b3fb4e13524397 { 'aliquot_tag': 'ALQ_fd153c40', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01823.RNA-Seq.R1_L006.T C3N-01823 LUAD RNA-Seq tumor CPT0097580006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L006_R1_001.fastq.gz 4598764700 FASTQ R1_L006 unaligned CPTAC3 5b45d19d-bdea-4e24-a7d7-7295f8f0781a 4a1f6f912d19519b15052b7d369eb2d2 { 'aliquot_tag': 'ALQ_4bf1052f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01823.RNA-Seq.R2_L001.A C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 171215_UNC32-K00270_0072_AHN3THBBXX_ACAGTG_S2_L001_R2_001.fastq.gz 3613132571 FASTQ R2_L001 unaligned CPTAC3 7973b618-d910-42da-9305-4c328f719b2e 036e16a07ad829442a0d4fa91a81a453 { 'aliquot_tag': 'ALQ_fd153c40', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01823.RNA-Seq.R2_L006.T C3N-01823 LUAD RNA-Seq tumor CPT0097580006 171107_UNC32-K00270_0063_BHLNTCBBXX_ACAGTG_S55_L006_R2_001.fastq.gz 5141440090 FASTQ R2_L006 unaligned CPTAC3 66f370eb-13cf-488f-b531-111714b86e96 9ece3c7276c5c49e23aa93f8538aa8d3 { 'aliquot_tag': 'ALQ_4bf1052f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-01823.RNA-Seq.transcriptome.A.hg38 C3N-01823 LUAD RNA-Seq tissue_normal CPT0097600006 e2447ae0-cb00-4bc4-a909-8660ff188824.rna_seq.transcriptome.gdc_realn.bam 8344124206 BAM transcriptome harmonized CPTAC3 46fdd4bc-8bc1-4882-bc11-7cab58b1fd55 7eee298132b3b635ce4829b132423d5f { 'aliquot_tag': 'ALQ_fd153c40', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01823.RNA-Seq.transcriptome.T.hg38 C3N-01823 LUAD RNA-Seq tumor CPT0097580006 371432fb-514a-4ff5-9a90-52f6aeeafc74.rna_seq.transcriptome.gdc_realn.bam 11363680450 BAM transcriptome harmonized CPTAC3 cf80a919-2ab1-4d84-a3a3-15b9dba1c393 9ead23749bb0542fb7e0a5d001379612 { 'aliquot_tag': 'ALQ_4bf1052f', 'gdc_sample_type': 'Primary Tumor' } C3N-01823.WGS.A C3N-01823 LUAD WGS tissue_normal CPT0097600009 CPT0097600009.WholeGenome.RP-1303.bam 62078209737 BAM aligned CPTAC3 2852fc32-95fc-4262-9587-4964a971024c c8e9e9ffd1c7981d7b62f54d08d5af83 { 'aliquot_tag': 'ALQ_6daa21d1', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -27548,17 +29547,20 @@ C3N-01825.REP_71e99535.WXS.T.hg38 C3N-01825 UCEC WXS tumor CPT0097730006 42791ee C3N-01825.REP_e15688a4.miRNA-Seq.T C3N-01825 UCEC miRNA-Seq tumor CPT0097730009 181113_UNC31-K00269_0164_AH23NNBBXY_CAACTA_S5_L005_R1_001.unaln.bam 297846600 BAM unaligned CPTAC3 f5b7ec01-eefb-43ad-95ee-7f4d42b8e34d 0c29d24ae4b92b7dca543b8d0140fd0f { 'aliquot_tag': 'REP_e15688a4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-01825.REP_e15688a4.miRNA-Seq.T.hg38 C3N-01825 UCEC miRNA-Seq tumor CPT0097730009 2f0a37e7-e5bf-4bc7-a449-3d9c21031b2e_mirnaseq_gdc_realn.bam 335008133 BAM harmonized CPTAC3 e07156c8-18ac-46d7-a551-40d8f4958b74 7fde5dc2e30634b5629191f8abeed1d9 { 'aliquot_tag': 'REP_e15688a4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-01825.REP_e15688a4.RNA-Seq.chimeric.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097730009 694b336b-0074-46ce-af20-216eb6484fe3.rna_seq.chimeric.gdc_realn.bam 36344490 BAM chimeric harmonized CPTAC3 b2add081-ab67-4af6-89b5-ff7d86fd19d2 aca5924f28efba87bc9ec924e657e13b { 'aliquot_tag': 'REP_e15688a4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-01825.REP_e15688a4.RNA-Seq.genomic.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097730009 694b336b-0074-46ce-af20-216eb6484fe3.rna_seq.genomic.gdc_realn.bam 8969946155 BAM genomic harmonized CPTAC3 4ab6162f-0d06-4e7c-b22a-44ff3f682e5a 6c371b3e3c2ed8fee8497361d05ec28a { 'aliquot_tag': 'REP_e15688a4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-01825.REP_e15688a4.RNA-Seq.R1_L008.T C3N-01825 UCEC RNA-Seq tumor CPT0097730009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACAGTG_S28_L008_R1_001.fastq.gz 4016926868 FASTQ R1_L008 unaligned CPTAC3 419d417d-b526-4604-99d8-dcda3c1e04a2 8c7c0f5aea734bfd8a90784074253913 { 'aliquot_tag': 'REP_e15688a4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-01825.REP_e15688a4.RNA-Seq.R2_L008.T C3N-01825 UCEC RNA-Seq tumor CPT0097730009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACAGTG_S28_L008_R2_001.fastq.gz 4314809464 FASTQ R2_L008 unaligned CPTAC3 a94be969-d00d-4dc9-bbf5-202369fe602a b8a4950db0555463c9cad9112648fffb { 'aliquot_tag': 'REP_e15688a4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3N-01825.REP_e15688a4.RNA-Seq.genomic.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097730009 694b336b-0074-46ce-af20-216eb6484fe3.rna_seq.genomic.gdc_realn.bam 8969946155 BAM genomic harmonized CPTAC3 c7e55e3b-2fb9-4e18-bb4d-76b8b4791321 6c371b3e3c2ed8fee8497361d05ec28a { 'aliquot_tag': 'REP_e15688a4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3N-01825.REP_e15688a4.RNA-Seq.R1_L008.T C3N-01825 UCEC RNA-Seq tumor CPT0097730009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACAGTG_S28_L008_R1_001.fastq.gz 4016926868 FASTQ R1_L008 unaligned CPTAC3 419d417d-b526-4604-99d8-dcda3c1e04a2 8c7c0f5aea734bfd8a90784074253913 { 'aliquot_tag': 'REP_e15688a4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R1', 'lane': 'L008' } +C3N-01825.REP_e15688a4.RNA-Seq.R2_L008.T C3N-01825 UCEC RNA-Seq tumor CPT0097730009 180606_UNC32-K00270_0097_AHVCKFBBXX_ACAGTG_S28_L008_R2_001.fastq.gz 4314809464 FASTQ R2_L008 unaligned CPTAC3 a94be969-d00d-4dc9-bbf5-202369fe602a b8a4950db0555463c9cad9112648fffb { 'aliquot_tag': 'REP_e15688a4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R2', 'lane': 'L008' } C3N-01825.REP_e15688a4.RNA-Seq.transcriptome.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097730009 694b336b-0074-46ce-af20-216eb6484fe3.rna_seq.transcriptome.gdc_realn.bam 11689383752 BAM transcriptome harmonized CPTAC3 295123ed-5a18-4822-8380-35aec955c76f d100575d7f8020a1243dc951af5146c5 { 'aliquot_tag': 'REP_e15688a4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-01825.RNA-Seq.chimeric.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097710006 64d66d0c-9441-4c38-b8cf-08c40c0467bc.rna_seq.chimeric.gdc_realn.bam 86926400 BAM chimeric harmonized CPTAC3 d7b5179d-63cb-47f5-9dac-faf1fdbc19f1 2c4e49102d9207f148abb852cc87e379 { 'aliquot_tag': 'ALQ_b29c655', 'gdc_sample_type': 'Primary Tumor' } +C3N-01825.RNA-Seq.chimeric.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097830001 c6914e86-bcbc-43a6-bf2a-160efc4f89f2.rna_seq.chimeric.gdc_realn.bam 214221323 BAM chimeric harmonized CPTAC3 a49572ea-90c8-417a-9708-88822b8ea072 79b50fc2febb967ea808072d1eba4a9c { 'aliquot_tag': 'ALQ_1edbb243', 'gdc_sample_type': 'Primary Tumor' } C3N-01825.RNA-Seq.genomic.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097710006 64d66d0c-9441-4c38-b8cf-08c40c0467bc.rna_seq.genomic.gdc_realn.bam 7916984281 BAM genomic harmonized CPTAC3 e4740b8e-a683-40b8-9122-27a7f2b796f5 3467957b17104dc00c84102837b83034 { 'aliquot_tag': 'ALQ_b29c655', 'gdc_sample_type': 'Primary Tumor' } -C3N-01825.RNA-Seq.R1_L006.T C3N-01825 UCEC RNA-Seq tumor CPT0097710006 171107_UNC32-K00270_0063_BHLNTCBBXX_TAGCTT_S56_L006_R1_001.fastq.gz 3649504839 FASTQ R1_L006 unaligned CPTAC3 fb6e7290-6e05-40fd-b122-340633db8e34 6e27d7f5cc7e0be3bd7675c075ddc51d { 'aliquot_tag': 'ALQ_b29c655', 'gdc_sample_type': 'Primary Tumor' } -C3N-01825.RNA-Seq.R1_.T C3N-01825 UCEC RNA-Seq tumor CPT0097830001 20210714_P1_G11_WB7988_plate1_S82_R1_001.fastq.gz 5750675269 FASTQ R1_ unaligned CPTAC3 41b126f1-4aab-4727-b926-8ee210e768a3 c75eca488a4eec8091d0a7084ca3981b { 'aliquot_tag': 'ALQ_1edbb243', 'gdc_sample_type': 'Primary Tumor' } -C3N-01825.RNA-Seq.R2_L006.T C3N-01825 UCEC RNA-Seq tumor CPT0097710006 171107_UNC32-K00270_0063_BHLNTCBBXX_TAGCTT_S56_L006_R2_001.fastq.gz 3925202348 FASTQ R2_L006 unaligned CPTAC3 ee34816a-0060-45f6-9813-334207970349 05040912ef651663e59b10e0ecd6aca5 { 'aliquot_tag': 'ALQ_b29c655', 'gdc_sample_type': 'Primary Tumor' } -C3N-01825.RNA-Seq.R2_.T C3N-01825 UCEC RNA-Seq tumor CPT0097830001 20210714_P1_G11_WB7988_plate1_S82_R2_001.fastq.gz 5917648328 FASTQ R2_ unaligned CPTAC3 bec325d5-9452-49c8-8ef4-b389a4bee8a3 b047f9e9a7a1679aec6900e240aada0a { 'aliquot_tag': 'ALQ_1edbb243', 'gdc_sample_type': 'Primary Tumor' } +C3N-01825.RNA-Seq.genomic.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097830001 c6914e86-bcbc-43a6-bf2a-160efc4f89f2.rna_seq.genomic.gdc_realn.bam 10153785310 BAM genomic harmonized CPTAC3 c320a0a0-1eee-41a3-bb66-42795186ca4f f993d5ebb8ec457bda63fc413593e90a { 'aliquot_tag': 'ALQ_1edbb243', 'gdc_sample_type': 'Primary Tumor' } +C3N-01825.RNA-Seq.R1_L006.T C3N-01825 UCEC RNA-Seq tumor CPT0097710006 171107_UNC32-K00270_0063_BHLNTCBBXX_TAGCTT_S56_L006_R1_001.fastq.gz 3649504839 FASTQ R1_L006 unaligned CPTAC3 fb6e7290-6e05-40fd-b122-340633db8e34 6e27d7f5cc7e0be3bd7675c075ddc51d { 'aliquot_tag': 'ALQ_b29c655', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01825.RNA-Seq.R2_L006.T C3N-01825 UCEC RNA-Seq tumor CPT0097710006 171107_UNC32-K00270_0063_BHLNTCBBXX_TAGCTT_S56_L006_R2_001.fastq.gz 3925202348 FASTQ R2_L006 unaligned CPTAC3 ee34816a-0060-45f6-9813-334207970349 05040912ef651663e59b10e0ecd6aca5 { 'aliquot_tag': 'ALQ_b29c655', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01825.RNA-Seq.T C3N-01825 UCEC RNA-Seq tumor CPT0097830001 20210714_P1_G11_WB7988_plate1_S82_R1_001.fastq.gz 5750675269 FASTQ unaligned CPTAC3 41b126f1-4aab-4727-b926-8ee210e768a3 c75eca488a4eec8091d0a7084ca3981b +C3N-01825.RNA-Seq.T C3N-01825 UCEC RNA-Seq tumor CPT0097830001 20210714_P1_G11_WB7988_plate1_S82_R2_001.fastq.gz 5917648328 FASTQ unaligned CPTAC3 bec325d5-9452-49c8-8ef4-b389a4bee8a3 b047f9e9a7a1679aec6900e240aada0a C3N-01825.RNA-Seq.transcriptome.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097710006 64d66d0c-9441-4c38-b8cf-08c40c0467bc.rna_seq.transcriptome.gdc_realn.bam 7595758212 BAM transcriptome harmonized CPTAC3 398129c7-e54f-4423-b5d4-2a3dfb374ddc 2131b99aaece3db93f78043e71373477 { 'aliquot_tag': 'ALQ_b29c655', 'gdc_sample_type': 'Primary Tumor' } +C3N-01825.RNA-Seq.transcriptome.T.hg38 C3N-01825 UCEC RNA-Seq tumor CPT0097830001 c6914e86-bcbc-43a6-bf2a-160efc4f89f2.rna_seq.transcriptome.gdc_realn.bam 3626293454 BAM transcriptome harmonized CPTAC3 b1b1c0ad-645a-4a8f-8c33-73faa8535b9b 5aee52ecafc033188bf4c99c9c6aa06b { 'aliquot_tag': 'ALQ_1edbb243', 'gdc_sample_type': 'Primary Tumor' } C3N-01825.WGS.N C3N-01825 UCEC WGS blood_normal CPT0097750002 CPT0097750002.WholeGenome.RP-1303.bam 59370925934 BAM aligned CPTAC3 37d69863-1e89-48e5-a8f8-0e6861762b99 b65210e53c1afad0f8d1d5be1f77c271 { 'aliquot_tag': 'ALQ_f9c4a48c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01825.WGS.N.hg38 C3N-01825 UCEC WGS blood_normal CPT0097750002 e85c33bd-3b8d-4bad-9735-e48f81491019_wgs_gdc_realn.bam 87791073707 BAM harmonized CPTAC3 522582a7-24d6-4b9a-9e6a-5116e3ca5c72 26eaee75872fe5c52d07a18587eb8890 { 'aliquot_tag': 'ALQ_f9c4a48c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01825.WGS.T C3N-01825 UCEC WGS tumor CPT0097710009 CPT0097710009.WholeGenome.RP-1303.bam 62049197185 BAM aligned CPTAC3 5f8d88f4-c399-41b2-9e81-2a46297a87d7 19b09eee700ee0aeeb7acdfb88d713b3 { 'aliquot_tag': 'ALQ_9b96dbc4', 'gdc_sample_type': 'Primary Tumor' } @@ -27575,16 +29577,16 @@ C3N-01828.miRNA-Seq.A C3N-01828 CCRCC miRNA-Seq tissue_normal CPT0097880009 1811 C3N-01828.miRNA-Seq.A.hg38 C3N-01828 CCRCC miRNA-Seq tissue_normal CPT0097880009 4d774f02-cfa0-4887-bdca-a31d251c9d02_mirnaseq_gdc_realn.bam 219048131 BAM harmonized CPTAC3 210a1236-d53a-418a-9332-d9eb5345f829 0a96e067dce48e56d92ea1131e362d79 { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01828.miRNA-Seq.T C3N-01828 CCRCC miRNA-Seq tumor CPT0097850006 181119_UNC31-K00269_0165_AH27WCBBXY_TGACCA_S28_L003_R1_001.unaln.bam 227721460 BAM unaligned CPTAC3 f0828ad7-8106-4011-9db0-6973d94796a4 c19f790b709af79b3a6a7c82709a79ce { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor' } C3N-01828.miRNA-Seq.T.hg38 C3N-01828 CCRCC miRNA-Seq tumor CPT0097850006 4b68c6bd-7978-4aaa-bfe6-eb65ad96f998_mirnaseq_gdc_realn.bam 252281406 BAM harmonized CPTAC3 12b5c994-b9bb-4956-9d92-c995d0f807ff 91739096731e200012d3ed86da4edb99 { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor' } -C3N-01828.RNA-Seq.chimeric.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 b2e4a430-dc02-40b2-a706-989fd10c5068.rna_seq.chimeric.gdc_realn.bam 27540694 BAM chimeric harmonized CPTAC3 41bbc6a0-acbf-4a36-904f-be787d6acc7f a89bebf47c3632b1f736849dcac8ac38 { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01828.RNA-Seq.chimeric.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 59646d87-e532-46e9-8496-b292aec32114.rna_seq.chimeric.gdc_realn.bam 28936496 BAM chimeric harmonized CPTAC3 7373c10c-12aa-4ddb-980c-9373906c11ad f9ad9983454fd0a442168c3773498ef9 { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor' } -C3N-01828.RNA-Seq.genomic.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 b2e4a430-dc02-40b2-a706-989fd10c5068.rna_seq.genomic.gdc_realn.bam 8074235658 BAM genomic harmonized CPTAC3 6d0aeb92-9df5-4686-a601-99153337fb3a 462a17238efec08e17cfddfd0570d20d { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01828.RNA-Seq.genomic.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 59646d87-e532-46e9-8496-b292aec32114.rna_seq.genomic.gdc_realn.bam 7911252173 BAM genomic harmonized CPTAC3 d3e572cd-201e-4264-b281-bff33575fe48 caef85f014dbfa2f15796981acc9b1b6 { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor' } -C3N-01828.RNA-Seq.R1_L002.A C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L002_R1_001.fastq.gz 3314280612 FASTQ R1_L002 unaligned CPTAC3 88455df6-837c-46c9-af08-4cdb5d74b947 66958c7f3b06d5c403f3af4fe546fc4c { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01828.RNA-Seq.R1_L008.T C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 3539841466 FASTQ R1_L008 unaligned CPTAC3 788342e9-7521-48ec-9bce-3a8c71bc6dc2 9349249ebe2c2ad97adee5db33c92850 { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor' } -C3N-01828.RNA-Seq.R2_L002.A C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L002_R2_001.fastq.gz 3699220691 FASTQ R2_L002 unaligned CPTAC3 01bb34cf-1129-4513-ab29-bdce592de42b f6530f38080216d186534aaa43990638 { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01828.RNA-Seq.R2_L008.T C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 3939708570 FASTQ R2_L008 unaligned CPTAC3 bcf7727b-fc8e-4fbc-91ed-1f27520ea6c5 af5dda7b5c124286d8582985909f29d8 { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor' } -C3N-01828.RNA-Seq.transcriptome.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 b2e4a430-dc02-40b2-a706-989fd10c5068.rna_seq.transcriptome.gdc_realn.bam 7612403476 BAM transcriptome harmonized CPTAC3 f27bb727-2373-4b08-902a-0d388b04328b 6435370d73bb5f032006ed0d26a7191c { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01828.RNA-Seq.transcriptome.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 59646d87-e532-46e9-8496-b292aec32114.rna_seq.transcriptome.gdc_realn.bam 8014062670 BAM transcriptome harmonized CPTAC3 77fa200a-338e-4174-9b33-6d6b0359421e bbaf0df29de2586e4109db7e66e3c99e { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor' } +C3N-01828.RNA-Seq.chimeric.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 90095d99-984a-401c-81a6-47067129cbb4.rna_seq.chimeric.gdc_realn.bam 27535798 BAM chimeric harmonized CPTAC3 e6d7cd01-5ccd-4e9f-b998-ecdfa40d9d36 812beee48e12be7a7ad70eaa18c22d4c { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01828.RNA-Seq.chimeric.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 5cbe37d8-4642-4dff-95ae-93ec9043989d.rna_seq.chimeric.gdc_realn.bam 28928878 BAM chimeric harmonized CPTAC3 70dded1f-a750-48e3-9ff2-823ee7379b25 7fd2b1fbf5e0cb828a6c122cd6286f83 { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor' } +C3N-01828.RNA-Seq.genomic.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 90095d99-984a-401c-81a6-47067129cbb4.rna_seq.genomic.gdc_realn.bam 8075345403 BAM genomic harmonized CPTAC3 4bc1eafe-cc95-4990-bc81-5b4b101cafb0 e4e6a147867be32941a2cfa712d108c2 { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01828.RNA-Seq.genomic.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 5cbe37d8-4642-4dff-95ae-93ec9043989d.rna_seq.genomic.gdc_realn.bam 7912355784 BAM genomic harmonized CPTAC3 6a79ba55-9741-482e-9d1b-2136ae153385 d7cd5832ccb48525727a9a968e6371d7 { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor' } +C3N-01828.RNA-Seq.R1_L002.A C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L002_R1_001.fastq.gz 3314280612 FASTQ R1_L002 unaligned CPTAC3 88455df6-837c-46c9-af08-4cdb5d74b947 66958c7f3b06d5c403f3af4fe546fc4c { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-01828.RNA-Seq.R1_L008.T C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 3539841466 FASTQ R1_L008 unaligned CPTAC3 788342e9-7521-48ec-9bce-3a8c71bc6dc2 9349249ebe2c2ad97adee5db33c92850 { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01828.RNA-Seq.R2_L002.A C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 180516_UNC31-K00269_0129_AHTWLFBBXX_ACAGTG_S5_L002_R2_001.fastq.gz 3699220691 FASTQ R2_L002 unaligned CPTAC3 01bb34cf-1129-4513-ab29-bdce592de42b f6530f38080216d186534aaa43990638 { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-01828.RNA-Seq.R2_L008.T C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 171109_UNC31-K00269_0090_AHLHNWBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 3939708570 FASTQ R2_L008 unaligned CPTAC3 bcf7727b-fc8e-4fbc-91ed-1f27520ea6c5 af5dda7b5c124286d8582985909f29d8 { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01828.RNA-Seq.transcriptome.A.hg38 C3N-01828 CCRCC RNA-Seq tissue_normal CPT0097880009 90095d99-984a-401c-81a6-47067129cbb4.rna_seq.transcriptome.gdc_realn.bam 8657613822 BAM transcriptome harmonized CPTAC3 41b38918-c894-4c62-8d6a-5ef45ee41099 88f26df06cfc350555c0a97f2858a132 { 'aliquot_tag': 'ALQ_67d00b60', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01828.RNA-Seq.transcriptome.T.hg38 C3N-01828 CCRCC RNA-Seq tumor CPT0097850006 5cbe37d8-4642-4dff-95ae-93ec9043989d.rna_seq.transcriptome.gdc_realn.bam 9137680251 BAM transcriptome harmonized CPTAC3 61a828ed-ab75-4345-9b7d-869ee4477701 e0456cb3f53dc5122cafb60e53f5893d { 'aliquot_tag': 'ALQ_fffd240', 'gdc_sample_type': 'Primary Tumor' } C3N-01828.WGS.A C3N-01828 CCRCC WGS tissue_normal CPT0097880006 CPT0097880006.WholeGenome.RP-1303.bam 65514632647 BAM aligned CPTAC3 21051ce7-85f0-4a40-b6cd-53fbc917dd8e b34dee4907a3090b48b2eea797cdb975 { 'aliquot_tag': 'ALQ_f76f16f1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01828.WGS.A.hg38 C3N-01828 CCRCC WGS tissue_normal CPT0097880006 fff5df36-59bc-4e34-a194-e50179469f0b_wgs_gdc_realn.bam 96795677214 BAM harmonized CPTAC3 b1d36d7a-66ef-4209-998c-6dfa4c848a1c 7aee731da24af7c7648326c30566ceeb { 'aliquot_tag': 'ALQ_f76f16f1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01828.WGS.N C3N-01828 CCRCC WGS blood_normal CPT0097890002 CPT0097890002.WholeGenome.RP-1303.bam 58935249933 BAM aligned CPTAC3 77fdbde2-092c-4e25-b7f1-2410388cb6e8 1b35654a16c5eaec7626ef721955b7e9 { 'aliquot_tag': 'ALQ_cd62fb58', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27603,18 +29605,21 @@ C3N-01830.miRNA-Seq.A C3N-01830 UCEC miRNA-Seq tissue_normal CPT0097320009 18111 C3N-01830.miRNA-Seq.A.hg38 C3N-01830 UCEC miRNA-Seq tissue_normal CPT0097320009 a0ba4db4-1765-4f08-8c7f-cfb4ec70cc8d_mirnaseq_gdc_realn.bam 318039760 BAM harmonized CPTAC3 3285ae74-9453-4473-b51b-bab502ed2ceb 40fed72a98dcb8f60bc83ef767f46cb1 { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01830.miRNA-Seq.T C3N-01830 UCEC miRNA-Seq tumor CPT0097300006 181108_UNC31-K00269_0163_BH23TVBBXY_CAAAAG_S28_L007_R1_001.unaln.bam 196843215 BAM unaligned CPTAC3 de8fd048-5653-4cca-9c22-59d99572a28f c0dd99798cb897c72bd87cb046d547ec { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor' } C3N-01830.miRNA-Seq.T.hg38 C3N-01830 UCEC miRNA-Seq tumor CPT0097300006 6eac3b83-3eb2-4f8f-83c4-4df1ca6352b3_mirnaseq_gdc_realn.bam 213660747 BAM harmonized CPTAC3 3012769f-5f2d-4091-9f36-f79a1d5f13ef 1edb0d69f3e28131d5af156610b177be { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01830.RNA-Seq.chimeric.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 1f4cc0b3-d7f5-4498-a493-ff02b3948a62.rna_seq.chimeric.gdc_realn.bam 27041277 BAM chimeric harmonized CPTAC3 11b8b44f-ad36-4d89-bb31-0e5e92eee1b9 2d17e23c0c16a52e9356fa4cbdcea307 { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01830.RNA-Seq.chimeric.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 bcb80c4f-b559-4a45-9d37-0478af55445d.rna_seq.chimeric.gdc_realn.bam 62326497 BAM chimeric harmonized CPTAC3 433fe26f-390d-4e61-9299-ed598cd7b148 60fa56aaeb2400a45fe72b7bf1523143 { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01830.RNA-Seq.genomic.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 1f4cc0b3-d7f5-4498-a493-ff02b3948a62.rna_seq.genomic.gdc_realn.bam 8947688327 BAM genomic harmonized CPTAC3 680be518-3d7d-463a-ae41-30d1945a277a 3ba6d5c1ca62524896160edc50571df8 { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01830.RNA-Seq.genomic.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 bcb80c4f-b559-4a45-9d37-0478af55445d.rna_seq.genomic.gdc_realn.bam 8205628229 BAM genomic harmonized CPTAC3 d39d0847-4275-4ce8-8999-f785ed4026d6 e12713e73e709fd8691f7a75e11021f1 { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01830.RNA-Seq.R1_L006.A C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTTCC_S21_L006_R1_001.fastq.gz 3639573631 FASTQ R1_L006 unaligned CPTAC3 ac9789d6-fac8-4e2e-8dd7-5607b8de5ff5 21322ab0d0e1a93e7b6271d6b3a9a880 { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01830.RNA-Seq.R1_L006.T C3N-01830 UCEC RNA-Seq tumor CPT0097300006 171107_UNC32-K00270_0063_BHLNTCBBXX_GGCTAC_S58_L006_R1_001.fastq.gz 3630395279 FASTQ R1_L006 unaligned CPTAC3 aaf08754-43f6-42f6-b119-8877fb53c583 719ef8e3132b2720fb777429a0ab800c { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01830.RNA-Seq.R1_.T C3N-01830 UCEC RNA-Seq tumor CPT0097400001 20210714_P1_H11_WB7988_plate1_S94_R1_001.fastq.gz 6033965446 FASTQ R1_ unaligned CPTAC3 b31b6754-5586-4cf3-85be-34e309b8a98d aee8685519dc2e68f996bcd45dadf23a { 'aliquot_tag': 'ALQ_2eb908e8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01830.RNA-Seq.R2_L006.A C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTTCC_S21_L006_R2_001.fastq.gz 3880727184 FASTQ R2_L006 unaligned CPTAC3 19eab5b2-9e9a-4cdd-a551-c9bd2838a92c 4d848f9c5523d0d3804f7166ab4d617e { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01830.RNA-Seq.R2_L006.T C3N-01830 UCEC RNA-Seq tumor CPT0097300006 171107_UNC32-K00270_0063_BHLNTCBBXX_GGCTAC_S58_L006_R2_001.fastq.gz 4068659067 FASTQ R2_L006 unaligned CPTAC3 f89ea58d-d97e-43bf-8cb5-7afe7f304350 fc851670ba207e332f6dd1899a0ac8f1 { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01830.RNA-Seq.R2_.T C3N-01830 UCEC RNA-Seq tumor CPT0097400001 20210714_P1_H11_WB7988_plate1_S94_R2_001.fastq.gz 6233966189 FASTQ R2_ unaligned CPTAC3 ebe005b3-2880-431a-ac33-a92bec12b0f4 0a7ecffa7e7f57a2030a9a4d406dcc7f { 'aliquot_tag': 'ALQ_2eb908e8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01830.RNA-Seq.transcriptome.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 1f4cc0b3-d7f5-4498-a493-ff02b3948a62.rna_seq.transcriptome.gdc_realn.bam 9490360160 BAM transcriptome harmonized CPTAC3 22c03085-f671-4093-86b2-f2df426a42e8 26036d284cfa36c89e114a072b26a72a { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01830.RNA-Seq.transcriptome.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 bcb80c4f-b559-4a45-9d37-0478af55445d.rna_seq.transcriptome.gdc_realn.bam 8050846088 BAM transcriptome harmonized CPTAC3 55593db0-d37e-470f-ae34-c340b7b1346d 02db7bce43240e4fea966c6eeb3f0132 { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01830.RNA-Seq.chimeric.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 59643c07-983b-49ec-ac56-0b9478ede75e.rna_seq.chimeric.gdc_realn.bam 27054554 BAM chimeric harmonized CPTAC3 3e61d21b-5945-41b2-8088-a9fef2c9e4a8 033b18d60769c97207c0dc54efae407d { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01830.RNA-Seq.chimeric.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 cfff1e78-6ebe-4865-bebc-8283bfd8ddbd.rna_seq.chimeric.gdc_realn.bam 62322117 BAM chimeric harmonized CPTAC3 d8edad04-db4d-4810-828c-8dadb1165a31 606885f843930cd091b84b95676b107e { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01830.RNA-Seq.chimeric.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097400001 978b00a1-c4e5-4dee-98bb-5f787e2d3331.rna_seq.chimeric.gdc_realn.bam 205674444 BAM chimeric harmonized CPTAC3 9d604e42-ee33-49a1-b4b3-da8879ca4682 09d4c50dfa9dae9b9ceac3ec147ec3ef { 'aliquot_tag': 'ALQ_2eb908e8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01830.RNA-Seq.genomic.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 59643c07-983b-49ec-ac56-0b9478ede75e.rna_seq.genomic.gdc_realn.bam 8949382912 BAM genomic harmonized CPTAC3 b2868dbf-c281-49f3-81bc-4309ed3f4b7c 4ae629aba7a4d009209bba93848bd75d { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01830.RNA-Seq.genomic.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 cfff1e78-6ebe-4865-bebc-8283bfd8ddbd.rna_seq.genomic.gdc_realn.bam 8206766342 BAM genomic harmonized CPTAC3 45863fa6-e4f2-47ca-adfa-43e7275614f1 fe59766e515f9b5c52a6d29b20b3bc85 { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01830.RNA-Seq.genomic.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097400001 978b00a1-c4e5-4dee-98bb-5f787e2d3331.rna_seq.genomic.gdc_realn.bam 9748994833 BAM genomic harmonized CPTAC3 80e58bb0-466b-449d-9f37-fb4ae536140a a18810cf2d7c863267567230b2a49755 { 'aliquot_tag': 'ALQ_2eb908e8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01830.RNA-Seq.R1_L006.A C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTTCC_S21_L006_R1_001.fastq.gz 3639573631 FASTQ R1_L006 unaligned CPTAC3 ac9789d6-fac8-4e2e-8dd7-5607b8de5ff5 21322ab0d0e1a93e7b6271d6b3a9a880 { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01830.RNA-Seq.R1_L006.T C3N-01830 UCEC RNA-Seq tumor CPT0097300006 171107_UNC32-K00270_0063_BHLNTCBBXX_GGCTAC_S58_L006_R1_001.fastq.gz 3630395279 FASTQ R1_L006 unaligned CPTAC3 aaf08754-43f6-42f6-b119-8877fb53c583 719ef8e3132b2720fb777429a0ab800c { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01830.RNA-Seq.R2_L006.A C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 180606_UNC32-K00270_0097_AHVCKFBBXX_AGTTCC_S21_L006_R2_001.fastq.gz 3880727184 FASTQ R2_L006 unaligned CPTAC3 19eab5b2-9e9a-4cdd-a551-c9bd2838a92c 4d848f9c5523d0d3804f7166ab4d617e { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01830.RNA-Seq.R2_L006.T C3N-01830 UCEC RNA-Seq tumor CPT0097300006 171107_UNC32-K00270_0063_BHLNTCBBXX_GGCTAC_S58_L006_R2_001.fastq.gz 4068659067 FASTQ R2_L006 unaligned CPTAC3 f89ea58d-d97e-43bf-8cb5-7afe7f304350 fc851670ba207e332f6dd1899a0ac8f1 { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01830.RNA-Seq.T C3N-01830 UCEC RNA-Seq tumor CPT0097400001 20210714_P1_H11_WB7988_plate1_S94_R1_001.fastq.gz 6033965446 FASTQ unaligned CPTAC3 b31b6754-5586-4cf3-85be-34e309b8a98d aee8685519dc2e68f996bcd45dadf23a +C3N-01830.RNA-Seq.T C3N-01830 UCEC RNA-Seq tumor CPT0097400001 20210714_P1_H11_WB7988_plate1_S94_R2_001.fastq.gz 6233966189 FASTQ unaligned CPTAC3 ebe005b3-2880-431a-ac33-a92bec12b0f4 0a7ecffa7e7f57a2030a9a4d406dcc7f +C3N-01830.RNA-Seq.transcriptome.A.hg38 C3N-01830 UCEC RNA-Seq tissue_normal CPT0097320009 59643c07-983b-49ec-ac56-0b9478ede75e.rna_seq.transcriptome.gdc_realn.bam 10850923251 BAM transcriptome harmonized CPTAC3 5a5e6f24-e1b6-451b-9b7e-b06468de83fa 8559c413f5198c2b9a7e664f8dffeb2b { 'aliquot_tag': 'ALQ_47a7e302', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01830.RNA-Seq.transcriptome.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097300006 cfff1e78-6ebe-4865-bebc-8283bfd8ddbd.rna_seq.transcriptome.gdc_realn.bam 9264290669 BAM transcriptome harmonized CPTAC3 c0895164-3d63-4de0-8878-13d69b923355 3152c36fe52ef6e8fc84faf5405728ba { 'aliquot_tag': 'ALQ_add8adf3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01830.RNA-Seq.transcriptome.T.hg38 C3N-01830 UCEC RNA-Seq tumor CPT0097400001 978b00a1-c4e5-4dee-98bb-5f787e2d3331.rna_seq.transcriptome.gdc_realn.bam 5339940710 BAM transcriptome harmonized CPTAC3 f479b50d-6505-4c5a-8728-6a4b5ab0d100 a8bf0e5deabbfd0b2216c993c150b85b { 'aliquot_tag': 'ALQ_2eb908e8', 'gdc_sample_type': 'Primary Tumor' } C3N-01830.WGS.A C3N-01830 UCEC WGS tissue_normal CPT0097320006 CPT0097320006.WholeGenome.RP-1303.bam 61534784508 BAM aligned CPTAC3 3b610c6e-dfdd-4742-82ad-41055a4b639e bb2e55fd0156ec4f925e7a34ab53b503 { 'aliquot_tag': 'ALQ_d718fe93', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01830.WGS.A.hg38 C3N-01830 UCEC WGS tissue_normal CPT0097320006 d2f91b7f-3ba9-4f92-9999-e34aaf39e8b6_wgs_gdc_realn.bam 89718257653 BAM harmonized CPTAC3 b58fd6d0-ace8-402f-962e-f88632a3b25b a12d29c7870f1682ece44dbdc2ac70d6 { 'aliquot_tag': 'ALQ_d718fe93', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01830.WGS.N C3N-01830 UCEC WGS blood_normal CPT0097330002 CPT0097330002.WholeGenome.RP-1303.bam 66058617011 BAM aligned CPTAC3 bc64edb5-0091-4fcd-a5ba-85ab1638d126 97b7b7b349f9396f3661374fe600ac7c { 'aliquot_tag': 'ALQ_ed15133a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27632,9 +29637,9 @@ C3N-01842.MethArray.Red.T C3N-01842 LUAD Methylation Array tumor CPT0098130009 2 C3N-01842.miRNA-Seq.T C3N-01842 LUAD miRNA-Seq tumor CPT0098130006 181108_UNC31-K00269_0163_BH23TVBBXY_CAACTA_S29_L007_R1_001.unaln.bam 215987460 BAM unaligned CPTAC3 7d1c204a-4b3a-45e6-8cfb-2383f1013d3d e49675e5d61ad3e84776e912e0a52f72 { 'aliquot_tag': 'ALQ_51f806c1', 'gdc_sample_type': 'Primary Tumor' } C3N-01842.miRNA-Seq.T.hg38 C3N-01842 LUAD miRNA-Seq tumor CPT0098130006 1769e0a6-3b34-4b5b-9926-e7a090743eef_mirnaseq_gdc_realn.bam 234395036 BAM harmonized CPTAC3 9daf4cc4-b710-49af-9018-583d1c74b668 e982e15142acbe45d84627264a5f5b7f { 'aliquot_tag': 'ALQ_51f806c1', 'gdc_sample_type': 'Primary Tumor' } C3N-01842.RNA-Seq.chimeric.T.hg38 C3N-01842 LUAD RNA-Seq tumor CPT0098130006 e53c3383-877f-432e-8884-e78f326b86c6.rna_seq.chimeric.gdc_realn.bam 76384445 BAM chimeric harmonized CPTAC3 143b8440-5470-4245-98e0-5ee9cff58d1b 8ee3d879e5745a14ddfb99bbe4cf6e68 { 'aliquot_tag': 'ALQ_51f806c1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01842.RNA-Seq.genomic.T.hg38 C3N-01842 LUAD RNA-Seq tumor CPT0098130006 e53c3383-877f-432e-8884-e78f326b86c6.rna_seq.genomic.gdc_realn.bam 7747679143 BAM genomic harmonized CPTAC3 8a70be27-5277-43ac-9db5-4bd784784971 cf22954d837f8fbda282d58458c70a0f { 'aliquot_tag': 'ALQ_51f806c1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01842.RNA-Seq.R1_L006.T C3N-01842 LUAD RNA-Seq tumor CPT0098130006 171107_UNC32-K00270_0063_BHLNTCBBXX_CTTGTA_S57_L006_R1_001.fastq.gz 3597322967 FASTQ R1_L006 unaligned CPTAC3 69d3152e-5984-45f8-9a59-726c9fd54827 1b958caeac26e176608327f7b6eed3c6 { 'aliquot_tag': 'ALQ_51f806c1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01842.RNA-Seq.R2_L006.T C3N-01842 LUAD RNA-Seq tumor CPT0098130006 171107_UNC32-K00270_0063_BHLNTCBBXX_CTTGTA_S57_L006_R2_001.fastq.gz 3853225498 FASTQ R2_L006 unaligned CPTAC3 3aa0c988-0a67-41cd-a07e-b96f6c8b46b7 123eff09f36344f71932e2833ea10b33 { 'aliquot_tag': 'ALQ_51f806c1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01842.RNA-Seq.genomic.T.hg38 C3N-01842 LUAD RNA-Seq tumor CPT0098130006 e53c3383-877f-432e-8884-e78f326b86c6.rna_seq.genomic.gdc_realn.bam 7747679143 BAM genomic harmonized CPTAC3 e4581ab4-36e9-4484-8adb-5cb80d350f60 cf22954d837f8fbda282d58458c70a0f { 'aliquot_tag': 'ALQ_51f806c1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01842.RNA-Seq.R1_L006.T C3N-01842 LUAD RNA-Seq tumor CPT0098130006 171107_UNC32-K00270_0063_BHLNTCBBXX_CTTGTA_S57_L006_R1_001.fastq.gz 3597322967 FASTQ R1_L006 unaligned CPTAC3 69d3152e-5984-45f8-9a59-726c9fd54827 1b958caeac26e176608327f7b6eed3c6 { 'aliquot_tag': 'ALQ_51f806c1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01842.RNA-Seq.R2_L006.T C3N-01842 LUAD RNA-Seq tumor CPT0098130006 171107_UNC32-K00270_0063_BHLNTCBBXX_CTTGTA_S57_L006_R2_001.fastq.gz 3853225498 FASTQ R2_L006 unaligned CPTAC3 3aa0c988-0a67-41cd-a07e-b96f6c8b46b7 123eff09f36344f71932e2833ea10b33 { 'aliquot_tag': 'ALQ_51f806c1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-01842.RNA-Seq.transcriptome.T.hg38 C3N-01842 LUAD RNA-Seq tumor CPT0098130006 e53c3383-877f-432e-8884-e78f326b86c6.rna_seq.transcriptome.gdc_realn.bam 8100084673 BAM transcriptome harmonized CPTAC3 b5420b6d-a11d-4e8b-af4b-982bbb303378 d65614a238823bb20de241c1f1cba4fb { 'aliquot_tag': 'ALQ_51f806c1', 'gdc_sample_type': 'Primary Tumor' } C3N-01842.WGS.N C3N-01842 LUAD WGS blood_normal CPT0098170002 CPT0098170002.WholeGenome.RP-1303.bam 76700917852 BAM aligned CPTAC3 56c09248-5b4c-4302-9c6d-a148ac0542ee 6067e0c5c3f1eef3eb3c199efe1f76a1 { 'aliquot_tag': 'ALQ_a3156418', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01842.WGS.N.hg38 C3N-01842 LUAD WGS blood_normal CPT0098170002 20dd5461-6505-48e7-b3d5-39e1d77be2de_wgs_gdc_realn.bam 113480017444 BAM harmonized CPTAC3 ca974bf0-2aef-4f42-9604-fa42b3d13105 5657e499b1d7f030d6c5f2c9441f59bb { 'aliquot_tag': 'ALQ_a3156418', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27648,13 +29653,16 @@ C3N-01843.MethArray.Green.T C3N-01843 UCEC Methylation Array tumor CPT0098270009 C3N-01843.MethArray.Red.T C3N-01843 UCEC Methylation Array tumor CPT0098270009 202234370093_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 e3820d12-943e-40fe-834d-47efb544a357 9bc0d7d77575dd3fdbb6b3612b7a0d98 { 'aliquot_tag': 'ALQ_b253cf3e', 'gdc_sample_type': 'Primary Tumor' } C3N-01843.miRNA-Seq.T C3N-01843 UCEC miRNA-Seq tumor CPT0098270006 181108_UNC31-K00269_0163_BH23TVBBXY_CACCGG_S30_L007_R1_001.unaln.bam 180554692 BAM unaligned CPTAC3 89288167-6eed-4133-9e54-ea0c61e0272d 0057c844cd652b7ae770db993aeb2eec { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor' } C3N-01843.miRNA-Seq.T.hg38 C3N-01843 UCEC miRNA-Seq tumor CPT0098270006 e4ba3017-f72a-4170-835c-588b7671ec9a_mirnaseq_gdc_realn.bam 198852500 BAM harmonized CPTAC3 bddb5f33-0a4a-4ab1-840a-cf66b2557347 d34dc407f5effc848a5cc0b737fb8e96 { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor' } -C3N-01843.RNA-Seq.chimeric.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 5d20813b-6626-4078-9444-04a99e894149.rna_seq.chimeric.gdc_realn.bam 82235994 BAM chimeric harmonized CPTAC3 b7e11466-cc6f-40eb-ad46-72a7666111e7 a53f3638ad254bee83114121167b4a77 { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor' } -C3N-01843.RNA-Seq.genomic.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 5d20813b-6626-4078-9444-04a99e894149.rna_seq.genomic.gdc_realn.bam 8820522606 BAM genomic harmonized CPTAC3 0b9b28b9-c91f-4935-b572-2b192c51160d b73948df4efce92f38706168aab70b45 { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor' } -C3N-01843.RNA-Seq.R1_L005.T C3N-01843 UCEC RNA-Seq tumor CPT0098270006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTCAA_S51_L005_R1_001.fastq.gz 4004645938 FASTQ R1_L005 unaligned CPTAC3 1ce39b71-9979-4cf0-b1fa-f7dd78e1775c af626d5f0b246bfc10eb92d9ec01c8a6 { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor' } -C3N-01843.RNA-Seq.R1_.T C3N-01843 UCEC RNA-Seq tumor CPT0098370001 20210714_P1_G10_WB7988_plate1_S81_R1_001.fastq.gz 7564564360 FASTQ R1_ unaligned CPTAC3 b62bcecf-4f5d-431b-9073-c56ab9b6080f dec9dddd2a8ad749452a17061bbdc3a9 { 'aliquot_tag': 'ALQ_77d494a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01843.RNA-Seq.R2_L005.T C3N-01843 UCEC RNA-Seq tumor CPT0098270006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTCAA_S51_L005_R2_001.fastq.gz 4345370178 FASTQ R2_L005 unaligned CPTAC3 716fbb61-c173-4b1c-bfe6-dbb2253ac40b 5fa11ca36d1d28c3201275367ef4e950 { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor' } -C3N-01843.RNA-Seq.R2_.T C3N-01843 UCEC RNA-Seq tumor CPT0098370001 20210714_P1_G10_WB7988_plate1_S81_R2_001.fastq.gz 7767211640 FASTQ R2_ unaligned CPTAC3 3d5f76f2-a2e9-4083-8301-7f00e7f44f87 aa5780118f4ffd8ba7272af4d5636df9 { 'aliquot_tag': 'ALQ_77d494a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-01843.RNA-Seq.transcriptome.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 5d20813b-6626-4078-9444-04a99e894149.rna_seq.transcriptome.gdc_realn.bam 8588741181 BAM transcriptome harmonized CPTAC3 ba423c41-479d-415c-90e5-e45a2ad5d615 758ba1e7c756abe4d4777beb4c8fe468 { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor' } +C3N-01843.RNA-Seq.chimeric.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 eebc322a-768a-40bf-94b2-43f9f96dbe42.rna_seq.chimeric.gdc_realn.bam 82222662 BAM chimeric harmonized CPTAC3 0f2a2b08-3b48-4e29-9096-b04f483c300a b9437effb07e4cc5dad1fca4f9850333 { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor' } +C3N-01843.RNA-Seq.chimeric.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098370001 0106a777-d3d7-4f8e-8dd5-37d42f2e9ce5.rna_seq.chimeric.gdc_realn.bam 126819549 BAM chimeric harmonized CPTAC3 5676ac33-f631-499c-a37b-b972564d3fd4 5000fd48ecde2a5586e9dee87fe1300a { 'aliquot_tag': 'ALQ_77d494a9', 'gdc_sample_type': 'Primary Tumor' } +C3N-01843.RNA-Seq.genomic.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 eebc322a-768a-40bf-94b2-43f9f96dbe42.rna_seq.genomic.gdc_realn.bam 8821705910 BAM genomic harmonized CPTAC3 a02e0ad4-e419-404c-9477-b12e010c0d72 3edd94ebeb2131935e2937233c1e8dcb { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor' } +C3N-01843.RNA-Seq.genomic.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098370001 0106a777-d3d7-4f8e-8dd5-37d42f2e9ce5.rna_seq.genomic.gdc_realn.bam 8725691156 BAM genomic harmonized CPTAC3 8bc72068-e01a-4356-873c-d293f6415ff0 03de162cb48a1864db8826f86640df1e { 'aliquot_tag': 'ALQ_77d494a9', 'gdc_sample_type': 'Primary Tumor' } +C3N-01843.RNA-Seq.R1_L005.T C3N-01843 UCEC RNA-Seq tumor CPT0098270006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTCAA_S51_L005_R1_001.fastq.gz 4004645938 FASTQ R1_L005 unaligned CPTAC3 1ce39b71-9979-4cf0-b1fa-f7dd78e1775c af626d5f0b246bfc10eb92d9ec01c8a6 { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01843.RNA-Seq.R2_L005.T C3N-01843 UCEC RNA-Seq tumor CPT0098270006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTCAA_S51_L005_R2_001.fastq.gz 4345370178 FASTQ R2_L005 unaligned CPTAC3 716fbb61-c173-4b1c-bfe6-dbb2253ac40b 5fa11ca36d1d28c3201275367ef4e950 { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01843.RNA-Seq.T C3N-01843 UCEC RNA-Seq tumor CPT0098370001 20210714_P1_G10_WB7988_plate1_S81_R1_001.fastq.gz 7564564360 FASTQ unaligned CPTAC3 b62bcecf-4f5d-431b-9073-c56ab9b6080f dec9dddd2a8ad749452a17061bbdc3a9 +C3N-01843.RNA-Seq.T C3N-01843 UCEC RNA-Seq tumor CPT0098370001 20210714_P1_G10_WB7988_plate1_S81_R2_001.fastq.gz 7767211640 FASTQ unaligned CPTAC3 3d5f76f2-a2e9-4083-8301-7f00e7f44f87 aa5780118f4ffd8ba7272af4d5636df9 +C3N-01843.RNA-Seq.transcriptome.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098270006 eebc322a-768a-40bf-94b2-43f9f96dbe42.rna_seq.transcriptome.gdc_realn.bam 9853048360 BAM transcriptome harmonized CPTAC3 fe2c7846-b307-4833-b025-f8b63e25df9d 6e1e5a47020d484ceb34bcce2323e3a8 { 'aliquot_tag': 'ALQ_22ecd2af', 'gdc_sample_type': 'Primary Tumor' } +C3N-01843.RNA-Seq.transcriptome.T.hg38 C3N-01843 UCEC RNA-Seq tumor CPT0098370001 0106a777-d3d7-4f8e-8dd5-37d42f2e9ce5.rna_seq.transcriptome.gdc_realn.bam 7581847748 BAM transcriptome harmonized CPTAC3 a5845248-13f0-442e-b0ff-b3e1728e3bae 6c4637f2e305db2f5a7e59b9ba2ed320 { 'aliquot_tag': 'ALQ_77d494a9', 'gdc_sample_type': 'Primary Tumor' } C3N-01843.WGS.N C3N-01843 UCEC WGS blood_normal CPT0098310002 CPT0098310002.WholeGenome.RP-1303.bam 56754312204 BAM aligned CPTAC3 03e8d6eb-573b-4ce2-8ce3-1710bff4d929 c70e2188a47b8a7a170974c7aa2e8232 { 'aliquot_tag': 'ALQ_619d30b3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01843.WGS.N.hg38 C3N-01843 UCEC WGS blood_normal CPT0098310002 2757476d-ceb2-41d1-af8b-6ae7ab4853ce_wgs_gdc_realn.bam 83161577173 BAM harmonized CPTAC3 d8bcb6d3-7c4a-4dfe-94f9-6168784a2226 445dba940d5c6348b9ff1cdbb346541d { 'aliquot_tag': 'ALQ_619d30b3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01843.WGS.T C3N-01843 UCEC WGS tumor CPT0098270009 CPT0098270009.WholeGenome.RP-1303.bam 59310205505 BAM aligned CPTAC3 79588eda-f3a6-4501-8f3c-da6eb96b5393 63ddba6ff19761423ef74f77baff51c0 { 'aliquot_tag': 'ALQ_b253cf3e', 'gdc_sample_type': 'Primary Tumor' } @@ -27674,11 +29682,11 @@ C3N-01846.miRNA-Seq.T.hg38 C3N-01846 LSCC miRNA-Seq tumor CPT0098770013 14427dc4 C3N-01846.RNA-Seq.chimeric.A.hg38 C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 ae919277-c567-435f-95f6-be8e8438c60b.rna_seq.chimeric.gdc_realn.bam 43839177 BAM chimeric harmonized CPTAC3 5a08ce0c-e758-42f8-9018-38424f5e426b 30e7c88ca75287061a75847c27e26eb1 { 'aliquot_tag': 'ALQ_31572dd9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01846.RNA-Seq.chimeric.T.hg38 C3N-01846 LSCC RNA-Seq tumor CPT0098770013 432dca74-2296-459d-81a3-1e255d45178a.rna_seq.chimeric.gdc_realn.bam 68603546 BAM chimeric harmonized CPTAC3 bae7ab81-130c-4b9e-aecf-58825c943aec 7d12a3d6d71f1f3a057f6b47a3fde689 { 'aliquot_tag': 'ALQ_1b5086d2', 'gdc_sample_type': 'Primary Tumor' } C3N-01846.RNA-Seq.genomic.A.hg38 C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 ae919277-c567-435f-95f6-be8e8438c60b.rna_seq.genomic.gdc_realn.bam 9086285710 BAM genomic harmonized CPTAC3 27690de8-9619-41fb-ae26-fc6701bf526a 973f8c02e694d16df6776ed12d7aee3c { 'aliquot_tag': 'ALQ_31572dd9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01846.RNA-Seq.genomic.T.hg38 C3N-01846 LSCC RNA-Seq tumor CPT0098770013 432dca74-2296-459d-81a3-1e255d45178a.rna_seq.genomic.gdc_realn.bam 9616875520 BAM genomic harmonized CPTAC3 cf8dfe5c-b7bd-47c9-af86-6db6366f6d58 b2b54d8b201aa3e5c1f27a152106d4f9 { 'aliquot_tag': 'ALQ_1b5086d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01846.RNA-Seq.R1_L006.A C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 180516_UNC32-K00270_0095_AHTY5LBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4074686817 FASTQ R1_L006 unaligned CPTAC3 8fdec590-e14f-43d1-b9b0-09521ef2894f e78ceaa7c842df94cd125c940d536913 { 'aliquot_tag': 'ALQ_31572dd9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01846.RNA-Seq.R1_L008.T C3N-01846 LSCC RNA-Seq tumor CPT0098770013 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L008_R1_001.fastq.gz 4008737637 FASTQ R1_L008 unaligned CPTAC3 318bc3c8-3804-423c-ac02-32b16694ac35 b7d50237eadbbdb87787a5bb73ce483a { 'aliquot_tag': 'ALQ_1b5086d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01846.RNA-Seq.R2_L006.A C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 180516_UNC32-K00270_0095_AHTY5LBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4536665085 FASTQ R2_L006 unaligned CPTAC3 a4a4a7fd-115a-4337-9000-0ab0ffd38450 8fea59d616a2f9f1845967b223ffa18c { 'aliquot_tag': 'ALQ_31572dd9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01846.RNA-Seq.R2_L008.T C3N-01846 LSCC RNA-Seq tumor CPT0098770013 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L008_R2_001.fastq.gz 4518105699 FASTQ R2_L008 unaligned CPTAC3 4adcca16-1732-4c17-8c4b-6fa33752717a 6861ed014d7346b793996e43cf4e753e { 'aliquot_tag': 'ALQ_1b5086d2', 'gdc_sample_type': 'Primary Tumor' } +C3N-01846.RNA-Seq.genomic.T.hg38 C3N-01846 LSCC RNA-Seq tumor CPT0098770013 432dca74-2296-459d-81a3-1e255d45178a.rna_seq.genomic.gdc_realn.bam 9616875520 BAM genomic harmonized CPTAC3 d71ced21-7289-4890-b85c-c028a07bf3e5 b2b54d8b201aa3e5c1f27a152106d4f9 { 'aliquot_tag': 'ALQ_1b5086d2', 'gdc_sample_type': 'Primary Tumor' } +C3N-01846.RNA-Seq.R1_L006.A C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 180516_UNC32-K00270_0095_AHTY5LBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4074686817 FASTQ R1_L006 unaligned CPTAC3 8fdec590-e14f-43d1-b9b0-09521ef2894f e78ceaa7c842df94cd125c940d536913 { 'aliquot_tag': 'ALQ_31572dd9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01846.RNA-Seq.R1_L008.T C3N-01846 LSCC RNA-Seq tumor CPT0098770013 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L008_R1_001.fastq.gz 4008737637 FASTQ R1_L008 unaligned CPTAC3 318bc3c8-3804-423c-ac02-32b16694ac35 b7d50237eadbbdb87787a5bb73ce483a { 'aliquot_tag': 'ALQ_1b5086d2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01846.RNA-Seq.R2_L006.A C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 180516_UNC32-K00270_0095_AHTY5LBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4536665085 FASTQ R2_L006 unaligned CPTAC3 a4a4a7fd-115a-4337-9000-0ab0ffd38450 8fea59d616a2f9f1845967b223ffa18c { 'aliquot_tag': 'ALQ_31572dd9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01846.RNA-Seq.R2_L008.T C3N-01846 LSCC RNA-Seq tumor CPT0098770013 171109_UNC31-K00269_0091_BHMFGTBBXX_GCCAAT_S5_L008_R2_001.fastq.gz 4518105699 FASTQ R2_L008 unaligned CPTAC3 4adcca16-1732-4c17-8c4b-6fa33752717a 6861ed014d7346b793996e43cf4e753e { 'aliquot_tag': 'ALQ_1b5086d2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01846.RNA-Seq.transcriptome.A.hg38 C3N-01846 LSCC RNA-Seq tissue_normal CPT0098800006 ae919277-c567-435f-95f6-be8e8438c60b.rna_seq.transcriptome.gdc_realn.bam 11863347066 BAM transcriptome harmonized CPTAC3 112dd47e-0661-486e-ba78-7ead9aa6c697 4b909f9fced5f3906682a54c2cc44af4 { 'aliquot_tag': 'ALQ_31572dd9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01846.RNA-Seq.transcriptome.T.hg38 C3N-01846 LSCC RNA-Seq tumor CPT0098770013 432dca74-2296-459d-81a3-1e255d45178a.rna_seq.transcriptome.gdc_realn.bam 10644613853 BAM transcriptome harmonized CPTAC3 02feb8b4-3165-4caf-8da6-41b844f57d2c e3721d4672b725c1019c3a79f1478ab0 { 'aliquot_tag': 'ALQ_1b5086d2', 'gdc_sample_type': 'Primary Tumor' } C3N-01846.WGS.A C3N-01846 LSCC WGS tissue_normal CPT0098800009 CPT0098800009.WholeGenome.RP-1303.bam 59755756712 BAM aligned CPTAC3 95660a75-06a6-44c7-8ba0-a0d1adea2241 29807cf2d51f641eaeb4e2f746402d18 { 'aliquot_tag': 'ALQ_a1e83048', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -27699,18 +29707,21 @@ C3N-01847.miRNA-Seq.A C3N-01847 UCEC miRNA-Seq tissue_normal CPT0098940009 18111 C3N-01847.miRNA-Seq.A.hg38 C3N-01847 UCEC miRNA-Seq tissue_normal CPT0098940009 5ab2614e-af51-4b67-9994-5afb8d1709fa_mirnaseq_gdc_realn.bam 300991421 BAM harmonized CPTAC3 cc66c502-d44a-4f13-b6be-5a5436d08862 f400b959ff5827f55176dbcc50b0dc2f { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01847.miRNA-Seq.T C3N-01847 UCEC miRNA-Seq tumor CPT0098920006 181108_UNC31-K00269_0163_BH23TVBBXY_CACGAT_S31_L007_R1_001.unaln.bam 231443881 BAM unaligned CPTAC3 0eca0d17-4a9b-4822-95a3-3e5231f23fb8 832a971dfee511e5cf39958a7c71b0f4 { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor' } C3N-01847.miRNA-Seq.T.hg38 C3N-01847 UCEC miRNA-Seq tumor CPT0098920006 a5f76433-232d-4e63-bfb9-02faf4540d8a_mirnaseq_gdc_realn.bam 250661357 BAM harmonized CPTAC3 063470e9-14a9-4e74-b2ce-54c21ffc1af2 e5d226967cef3b1fec560373a8c1fc9e { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01847.RNA-Seq.chimeric.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 9fe3933f-6420-4b5e-b1f6-a4c8f7684261.rna_seq.chimeric.gdc_realn.bam 29383384 BAM chimeric harmonized CPTAC3 cd53211d-639a-4b87-b0bc-433dfa097478 ac8c1bc065212078da3d8f3265628913 { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01847.RNA-Seq.chimeric.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 6cf2bcb9-55d2-4996-9940-8e618e9a9457.rna_seq.chimeric.gdc_realn.bam 84277311 BAM chimeric harmonized CPTAC3 70d73433-2183-4dff-86be-3de335e6d788 cc0b1540307b05b7329b3f4387b6e7a5 { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01847.RNA-Seq.genomic.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 9fe3933f-6420-4b5e-b1f6-a4c8f7684261.rna_seq.genomic.gdc_realn.bam 8297582641 BAM genomic harmonized CPTAC3 728c8581-daef-409a-b26f-f5aae23d9285 8533554b0388847243f0bd566918327d { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01847.RNA-Seq.genomic.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 6cf2bcb9-55d2-4996-9940-8e618e9a9457.rna_seq.genomic.gdc_realn.bam 9506827367 BAM genomic harmonized CPTAC3 89f4e7e8-ab51-45d1-b2c6-7e9c294834d3 89260fcc20db38a01fa2bc56ce0dd79f { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01847.RNA-Seq.R1_L005.T C3N-01847 UCEC RNA-Seq tumor CPT0098920006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTTCC_S52_L005_R1_001.fastq.gz 4405831647 FASTQ R1_L005 unaligned CPTAC3 7a769205-8931-4eb0-b6d1-344016aa5232 5ac1d106ddc83442a698a1a7cf85d6fc { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01847.RNA-Seq.R1_L006.A C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 180606_UNC32-K00270_0097_AHVCKFBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3598866202 FASTQ R1_L006 unaligned CPTAC3 30bd8b82-d377-4e4a-8233-87dc305f5dcb 231c31dd929682b3e7266b883aa45d59 { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01847.RNA-Seq.R1_.T C3N-01847 UCEC RNA-Seq tumor CPT0099020001 20210714_P1_C10_WB7988_plate1_S34_R1_001.fastq.gz 6376631553 FASTQ R1_ unaligned CPTAC3 d326a3be-cccf-4fc6-9e9d-2e98d98926d3 fc40f428b3fb6f559ca6bf2380d0395c { 'aliquot_tag': 'ALQ_9fd762c3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01847.RNA-Seq.R2_L005.T C3N-01847 UCEC RNA-Seq tumor CPT0098920006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTTCC_S52_L005_R2_001.fastq.gz 4821043094 FASTQ R2_L005 unaligned CPTAC3 cd0e6b1b-d41d-4719-ba6d-c16966ede8a1 f7eddcc1cb93a845ee0b16aa77ddb158 { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-01847.RNA-Seq.R2_L006.A C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 180606_UNC32-K00270_0097_AHVCKFBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3946689885 FASTQ R2_L006 unaligned CPTAC3 20343e6a-3fde-41dc-abc2-96a59ce7e5bc a62e7d24d253a885a453419e1ca969b7 { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01847.RNA-Seq.R2_.T C3N-01847 UCEC RNA-Seq tumor CPT0099020001 20210714_P1_C10_WB7988_plate1_S34_R2_001.fastq.gz 6746868562 FASTQ R2_ unaligned CPTAC3 ea94136e-7d44-4384-b8ce-2ae1680cc755 beeb439205f533f865d5ce17adc40d81 { 'aliquot_tag': 'ALQ_9fd762c3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01847.RNA-Seq.transcriptome.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 9fe3933f-6420-4b5e-b1f6-a4c8f7684261.rna_seq.transcriptome.gdc_realn.bam 9357776578 BAM transcriptome harmonized CPTAC3 01ddbd53-4604-4718-8643-7d649f25dfcc 0ef2bf58bd8f96fed003af1541cb3e45 { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01847.RNA-Seq.transcriptome.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 6cf2bcb9-55d2-4996-9940-8e618e9a9457.rna_seq.transcriptome.gdc_realn.bam 10058682169 BAM transcriptome harmonized CPTAC3 0bd35b09-fbec-4c77-a797-08a5c612959b 77d171d2be5fcb25f4d35824f5e959b3 { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01847.RNA-Seq.chimeric.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 7629051c-9c15-4cb2-bfaa-60d88a9c85fa.rna_seq.chimeric.gdc_realn.bam 29372314 BAM chimeric harmonized CPTAC3 8bab7736-2aac-4a4b-ad5b-76ff48304c84 895a73c42b35ded3e1a27c7800f43f65 { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01847.RNA-Seq.chimeric.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 36bd0dae-f0c0-41fb-949f-948135eaef80.rna_seq.chimeric.gdc_realn.bam 84266212 BAM chimeric harmonized CPTAC3 b7293e50-8a59-4bd0-8a5b-a4035e50d4b6 79b2f485754713e1ff23579617f5a290 { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01847.RNA-Seq.chimeric.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0099020001 782f6a1f-1559-4ad9-bf21-6d4a4b3db46a.rna_seq.chimeric.gdc_realn.bam 195986840 BAM chimeric harmonized CPTAC3 26deefa1-4611-42a1-b514-398db9b2fc3c 10af977ee7298a0ad561be437ac5896d { 'aliquot_tag': 'ALQ_9fd762c3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01847.RNA-Seq.genomic.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 7629051c-9c15-4cb2-bfaa-60d88a9c85fa.rna_seq.genomic.gdc_realn.bam 8298532370 BAM genomic harmonized CPTAC3 f30f0e9f-1bb0-444d-a94a-d40ab5d34236 a3ad898ac6d0446f555c08231d463590 { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01847.RNA-Seq.genomic.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 36bd0dae-f0c0-41fb-949f-948135eaef80.rna_seq.genomic.gdc_realn.bam 9508565931 BAM genomic harmonized CPTAC3 a052819b-3fb2-44ac-88ba-18a8ee3cba54 e648ab02ceab89c62b3e448abc1a357d { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01847.RNA-Seq.genomic.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0099020001 782f6a1f-1559-4ad9-bf21-6d4a4b3db46a.rna_seq.genomic.gdc_realn.bam 10136624469 BAM genomic harmonized CPTAC3 05016140-73e9-4404-b193-70382df50125 2747482d0701f7b4bcaf57975e7d27b4 { 'aliquot_tag': 'ALQ_9fd762c3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01847.RNA-Seq.R1_L005.T C3N-01847 UCEC RNA-Seq tumor CPT0098920006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTTCC_S52_L005_R1_001.fastq.gz 4405831647 FASTQ R1_L005 unaligned CPTAC3 7a769205-8931-4eb0-b6d1-344016aa5232 5ac1d106ddc83442a698a1a7cf85d6fc { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01847.RNA-Seq.R1_L006.A C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 180606_UNC32-K00270_0097_AHVCKFBBXX_ATGTCA_S20_L006_R1_001.fastq.gz 3598866202 FASTQ R1_L006 unaligned CPTAC3 30bd8b82-d377-4e4a-8233-87dc305f5dcb 231c31dd929682b3e7266b883aa45d59 { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-01847.RNA-Seq.R2_L005.T C3N-01847 UCEC RNA-Seq tumor CPT0098920006 171107_UNC32-K00270_0063_BHLNTCBBXX_AGTTCC_S52_L005_R2_001.fastq.gz 4821043094 FASTQ R2_L005 unaligned CPTAC3 cd0e6b1b-d41d-4719-ba6d-c16966ede8a1 f7eddcc1cb93a845ee0b16aa77ddb158 { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01847.RNA-Seq.R2_L006.A C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 180606_UNC32-K00270_0097_AHVCKFBBXX_ATGTCA_S20_L006_R2_001.fastq.gz 3946689885 FASTQ R2_L006 unaligned CPTAC3 20343e6a-3fde-41dc-abc2-96a59ce7e5bc a62e7d24d253a885a453419e1ca969b7 { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-01847.RNA-Seq.T C3N-01847 UCEC RNA-Seq tumor CPT0099020001 20210714_P1_C10_WB7988_plate1_S34_R1_001.fastq.gz 6376631553 FASTQ unaligned CPTAC3 d326a3be-cccf-4fc6-9e9d-2e98d98926d3 fc40f428b3fb6f559ca6bf2380d0395c +C3N-01847.RNA-Seq.T C3N-01847 UCEC RNA-Seq tumor CPT0099020001 20210714_P1_C10_WB7988_plate1_S34_R2_001.fastq.gz 6746868562 FASTQ unaligned CPTAC3 ea94136e-7d44-4384-b8ce-2ae1680cc755 beeb439205f533f865d5ce17adc40d81 +C3N-01847.RNA-Seq.transcriptome.A.hg38 C3N-01847 UCEC RNA-Seq tissue_normal CPT0098940009 7629051c-9c15-4cb2-bfaa-60d88a9c85fa.rna_seq.transcriptome.gdc_realn.bam 10592431029 BAM transcriptome harmonized CPTAC3 85b08a49-c7dd-4172-8530-7c08c769baba ab24aea7e996c0467e0d8776aec878d8 { 'aliquot_tag': 'ALQ_9f34452d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01847.RNA-Seq.transcriptome.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0098920006 36bd0dae-f0c0-41fb-949f-948135eaef80.rna_seq.transcriptome.gdc_realn.bam 11577500423 BAM transcriptome harmonized CPTAC3 62b13918-7838-4d4b-b596-9f0f06673fb2 beaad0c8fcd5e78f95b35d0785ce4f1b { 'aliquot_tag': 'ALQ_80cbad1c', 'gdc_sample_type': 'Primary Tumor' } +C3N-01847.RNA-Seq.transcriptome.T.hg38 C3N-01847 UCEC RNA-Seq tumor CPT0099020001 782f6a1f-1559-4ad9-bf21-6d4a4b3db46a.rna_seq.transcriptome.gdc_realn.bam 7630435401 BAM transcriptome harmonized CPTAC3 66bcd82c-952c-467b-823d-f2ca453a7d01 e0dccf48bf0106efded93471b298da5e { 'aliquot_tag': 'ALQ_9fd762c3', 'gdc_sample_type': 'Primary Tumor' } C3N-01847.WGS.A C3N-01847 UCEC WGS tissue_normal CPT0098940006 CPT0098940006.WholeGenome.RP-1303.bam 58642172395 BAM aligned CPTAC3 159dbb83-fc57-4b14-bf4f-90a9ce88a373 9af7aaa81e3633406d3a69606e9f5590 { 'aliquot_tag': 'ALQ_f8b58bc', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01847.WGS.A.hg38 C3N-01847 UCEC WGS tissue_normal CPT0098940006 21d913ee-e1c1-4e89-876f-f026cd2e654c_wgs_gdc_realn.bam 87007708907 BAM harmonized CPTAC3 462f2069-63fc-427f-9ad3-3e7d55788cab d130e85577671e053854ace5c9fea549 { 'aliquot_tag': 'ALQ_f8b58bc', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01847.WGS.N C3N-01847 UCEC WGS blood_normal CPT0098950002 CPT0098950002.WholeGenome.RP-1303.bam 62529667972 BAM aligned CPTAC3 4ede2cd7-f1d7-43bf-affd-dcc871bbff4a 49db6eb273c654566020ec66fe743b97 { 'aliquot_tag': 'ALQ_3586b515', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27729,18 +29740,21 @@ C3N-01848.miRNA-Seq.A C3N-01848 UCEC miRNA-Seq tissue_normal CPT0099080009 18111 C3N-01848.miRNA-Seq.A.hg38 C3N-01848 UCEC miRNA-Seq tissue_normal CPT0099080009 59c781f9-d87f-4daf-bb72-fdc2d82090a5_mirnaseq_gdc_realn.bam 337481800 BAM harmonized CPTAC3 34c6bf01-3489-49fb-a73a-f5b7d1e959ef 277cd65915e3a614204f2f74e1c437af { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01848.miRNA-Seq.T C3N-01848 UCEC miRNA-Seq tumor CPT0099050006 181108_UNC31-K00269_0163_BH23TVBBXY_CACTCA_S32_L007_R1_001.unaln.bam 208984650 BAM unaligned CPTAC3 fc3f3c0c-2417-4354-b3d6-3729795430cd 557747477865332276afd956726475e6 { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor' } C3N-01848.miRNA-Seq.T.hg38 C3N-01848 UCEC miRNA-Seq tumor CPT0099050006 ebc770aa-86dd-4745-9ec9-bc56d39ddd58_mirnaseq_gdc_realn.bam 231356726 BAM harmonized CPTAC3 7670c4b1-ca54-4e4b-8825-5889668d3f54 8759ec759bb628641a4b4fd787751bb9 { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor' } -C3N-01848.RNA-Seq.chimeric.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 a643ee5e-55b9-4efe-aa55-cc419828f593.rna_seq.chimeric.gdc_realn.bam 41270243 BAM chimeric harmonized CPTAC3 298a7dfb-6417-4fa7-8102-f6aa98a0ece9 c58da2dab0b8e577ceb5ace362cb230d { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01848.RNA-Seq.chimeric.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 bb8e9c98-5a3d-46b8-bea9-0b9b248e7495.rna_seq.chimeric.gdc_realn.bam 59987794 BAM chimeric harmonized CPTAC3 fd117408-55a6-4885-9d6c-00f3663d2063 8d7bfe83bfa49a19c9b42afcd4360e9a { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor' } -C3N-01848.RNA-Seq.genomic.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 a643ee5e-55b9-4efe-aa55-cc419828f593.rna_seq.genomic.gdc_realn.bam 9925888786 BAM genomic harmonized CPTAC3 8f9dbd30-e8f7-47ae-a3a9-32b17999e98a 82b744565b18bb835aa3740632f0a240 { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01848.RNA-Seq.genomic.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 bb8e9c98-5a3d-46b8-bea9-0b9b248e7495.rna_seq.genomic.gdc_realn.bam 7892889252 BAM genomic harmonized CPTAC3 4967baa7-22c4-458e-96a7-88208031649f 9d5fee62a838ad0697437bcaf0daa9e3 { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor' } -C3N-01848.RNA-Seq.R1_L005.A C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3998734194 FASTQ R1_L005 unaligned CPTAC3 32347445-ca9b-48d5-86ed-8aa62be55b12 3ec46915a4a8aaf1a1006582e141321c { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01848.RNA-Seq.R1_L005.T C3N-01848 UCEC RNA-Seq tumor CPT0099050006 171107_UNC32-K00270_0063_BHLNTCBBXX_ATGTCA_S53_L005_R1_001.fastq.gz 3597399012 FASTQ R1_L005 unaligned CPTAC3 f9319d30-0a6a-4087-b77f-af799efb67b0 4f08cdecf74f9b9ff5deb9b5929d13cd { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor' } -C3N-01848.RNA-Seq.R1_.T C3N-01848 UCEC RNA-Seq tumor CPT0099150001 20210714_P1_D6_WB7988_plate1_S42_R1_001.fastq.gz 3988583172 FASTQ R1_ unaligned CPTAC3 076bc912-4a82-4cec-a4d1-c51023192c14 e5384cbfc0cdd4ec738f27d6dafe4789 { 'aliquot_tag': 'ALQ_e6ab6d76', 'gdc_sample_type': 'Primary Tumor' } -C3N-01848.RNA-Seq.R2_L005.A C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4446514471 FASTQ R2_L005 unaligned CPTAC3 11bdc837-b506-432e-806c-a1010aa468b4 420e3cd2ed4a8ca6c65093e5232606a0 { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01848.RNA-Seq.R2_L005.T C3N-01848 UCEC RNA-Seq tumor CPT0099050006 171107_UNC32-K00270_0063_BHLNTCBBXX_ATGTCA_S53_L005_R2_001.fastq.gz 3947068221 FASTQ R2_L005 unaligned CPTAC3 e63698ba-9f3a-4353-ac11-a4a669d86cc2 ce6d6dd29e011ebb2c07ab234f071fbc { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor' } -C3N-01848.RNA-Seq.R2_.T C3N-01848 UCEC RNA-Seq tumor CPT0099150001 20210714_P1_D6_WB7988_plate1_S42_R2_001.fastq.gz 4477653222 FASTQ R2_ unaligned CPTAC3 243c6178-fed8-4792-b4b6-b93d8d69e2bd f8a1782e50acbda4cb2712798b2c88db { 'aliquot_tag': 'ALQ_e6ab6d76', 'gdc_sample_type': 'Primary Tumor' } -C3N-01848.RNA-Seq.transcriptome.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 a643ee5e-55b9-4efe-aa55-cc419828f593.rna_seq.transcriptome.gdc_realn.bam 10223611405 BAM transcriptome harmonized CPTAC3 dace8606-bcf4-439e-9583-c017f349cb53 3aedc5e2c873479b98b7fdfe1c6a8e5e { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01848.RNA-Seq.transcriptome.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 bb8e9c98-5a3d-46b8-bea9-0b9b248e7495.rna_seq.transcriptome.gdc_realn.bam 7945466235 BAM transcriptome harmonized CPTAC3 045bfda0-67d9-4f9f-b09b-99e648b27e6a 700ca477d7edbc30d6ad6439e592625a { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor' } +C3N-01848.RNA-Seq.chimeric.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 ae7cb588-e904-46fb-8bbd-667f509820ce.rna_seq.chimeric.gdc_realn.bam 41229277 BAM chimeric harmonized CPTAC3 8ecef444-9379-4906-8c27-0c2857342859 c2f2ea463915c1c6f60e60e5cd7a18e6 { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01848.RNA-Seq.chimeric.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 5e90d8f3-2edd-416d-9994-1dccfda49c3c.rna_seq.chimeric.gdc_realn.bam 59975893 BAM chimeric harmonized CPTAC3 5935e8a2-43ba-4823-9895-697acde4d594 f10f35156de84952c475788e8065c9e1 { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor' } +C3N-01848.RNA-Seq.chimeric.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099150001 aff479e2-efab-45c6-9c9e-39c9a68b9826.rna_seq.chimeric.gdc_realn.bam 53306657 BAM chimeric harmonized CPTAC3 5e2d2680-2159-4511-9cf6-1be27b2d8914 accfafd9052173abad6127159720a812 { 'aliquot_tag': 'ALQ_e6ab6d76', 'gdc_sample_type': 'Primary Tumor' } +C3N-01848.RNA-Seq.genomic.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 ae7cb588-e904-46fb-8bbd-667f509820ce.rna_seq.genomic.gdc_realn.bam 9926451360 BAM genomic harmonized CPTAC3 7d8019b3-0b0f-47e7-8e7c-8ecd98dc9869 cb0a2ab78ac3fdcd81336013ea2ae5b7 { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01848.RNA-Seq.genomic.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 5e90d8f3-2edd-416d-9994-1dccfda49c3c.rna_seq.genomic.gdc_realn.bam 7893778255 BAM genomic harmonized CPTAC3 30bfb7ff-39c1-41c8-9e39-1158d7254d67 0abc29edf5318b128b133a1213114df6 { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor' } +C3N-01848.RNA-Seq.genomic.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099150001 aff479e2-efab-45c6-9c9e-39c9a68b9826.rna_seq.genomic.gdc_realn.bam 8141324920 BAM genomic harmonized CPTAC3 7776390c-6669-4360-aefd-44e9b215ce9b 9af777fa5d50b16061c602ee042ba896 { 'aliquot_tag': 'ALQ_e6ab6d76', 'gdc_sample_type': 'Primary Tumor' } +C3N-01848.RNA-Seq.R1_L005.A C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTCCGC_S18_L005_R1_001.fastq.gz 3998734194 FASTQ R1_L005 unaligned CPTAC3 32347445-ca9b-48d5-86ed-8aa62be55b12 3ec46915a4a8aaf1a1006582e141321c { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01848.RNA-Seq.R1_L005.T C3N-01848 UCEC RNA-Seq tumor CPT0099050006 171107_UNC32-K00270_0063_BHLNTCBBXX_ATGTCA_S53_L005_R1_001.fastq.gz 3597399012 FASTQ R1_L005 unaligned CPTAC3 f9319d30-0a6a-4087-b77f-af799efb67b0 4f08cdecf74f9b9ff5deb9b5929d13cd { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-01848.RNA-Seq.R2_L005.A C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTCCGC_S18_L005_R2_001.fastq.gz 4446514471 FASTQ R2_L005 unaligned CPTAC3 11bdc837-b506-432e-806c-a1010aa468b4 420e3cd2ed4a8ca6c65093e5232606a0 { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01848.RNA-Seq.R2_L005.T C3N-01848 UCEC RNA-Seq tumor CPT0099050006 171107_UNC32-K00270_0063_BHLNTCBBXX_ATGTCA_S53_L005_R2_001.fastq.gz 3947068221 FASTQ R2_L005 unaligned CPTAC3 e63698ba-9f3a-4353-ac11-a4a669d86cc2 ce6d6dd29e011ebb2c07ab234f071fbc { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-01848.RNA-Seq.T C3N-01848 UCEC RNA-Seq tumor CPT0099150001 20210714_P1_D6_WB7988_plate1_S42_R1_001.fastq.gz 3988583172 FASTQ unaligned CPTAC3 076bc912-4a82-4cec-a4d1-c51023192c14 e5384cbfc0cdd4ec738f27d6dafe4789 +C3N-01848.RNA-Seq.T C3N-01848 UCEC RNA-Seq tumor CPT0099150001 20210714_P1_D6_WB7988_plate1_S42_R2_001.fastq.gz 4477653222 FASTQ unaligned CPTAC3 243c6178-fed8-4792-b4b6-b93d8d69e2bd f8a1782e50acbda4cb2712798b2c88db +C3N-01848.RNA-Seq.transcriptome.A.hg38 C3N-01848 UCEC RNA-Seq tissue_normal CPT0099080009 ae7cb588-e904-46fb-8bbd-667f509820ce.rna_seq.transcriptome.gdc_realn.bam 11870911906 BAM transcriptome harmonized CPTAC3 9027bf17-fb27-4060-9a3c-f2cb10749319 cf482aa12b7084815e47bff704b31157 { 'aliquot_tag': 'ALQ_dbbcf250', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01848.RNA-Seq.transcriptome.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099050006 5e90d8f3-2edd-416d-9994-1dccfda49c3c.rna_seq.transcriptome.gdc_realn.bam 9094382622 BAM transcriptome harmonized CPTAC3 04911655-a333-412c-9aa3-c0903a592251 1a4d845b58d60a6a6fb4fbe851bf1297 { 'aliquot_tag': 'ALQ_b3932b70', 'gdc_sample_type': 'Primary Tumor' } +C3N-01848.RNA-Seq.transcriptome.T.hg38 C3N-01848 UCEC RNA-Seq tumor CPT0099150001 aff479e2-efab-45c6-9c9e-39c9a68b9826.rna_seq.transcriptome.gdc_realn.bam 7246552828 BAM transcriptome harmonized CPTAC3 68a772f5-2cca-4d37-bb6f-a3c6f1fad2e4 03e104ba1a26ea8476af20f31589604c { 'aliquot_tag': 'ALQ_e6ab6d76', 'gdc_sample_type': 'Primary Tumor' } C3N-01848.WGS.A C3N-01848 UCEC WGS tissue_normal CPT0099080006 CPT0099080006.WholeGenome.RP-1303.bam 57074268629 BAM aligned CPTAC3 eec33459-1fcc-4a31-b746-24d65d8237ea 0f0e599561c765909bbe0fbc54f9a4c4 { 'aliquot_tag': 'ALQ_4b03efc1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01848.WGS.A.hg38 C3N-01848 UCEC WGS tissue_normal CPT0099080006 428a6d25-6316-4e72-88b3-4f8e6203de8a_wgs_gdc_realn.bam 82687312539 BAM harmonized CPTAC3 698d94c2-fdd2-4fd6-abd8-6b0fdde43d0d fc8de03efd1c768ee76cf83198cb260f { 'aliquot_tag': 'ALQ_4b03efc1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01848.WGS.N C3N-01848 UCEC WGS blood_normal CPT0099090002 CPT0099090002.WholeGenome.RP-1303.bam 50887403993 BAM aligned CPTAC3 4d8bec4e-53ed-4747-8e7f-ba41a253de41 1025489fba0d8c4d8772cd588dbe6212 { 'aliquot_tag': 'ALQ_710e0268', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27757,11 +29771,11 @@ C3N-01849.MethArray.Green.T C3N-01849 GBM Methylation Array tumor CPT0224780006 C3N-01849.MethArray.Red.T C3N-01849 GBM Methylation Array tumor CPT0224780006 204367490048_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 c8bc6ee7-95dc-48a6-8d12-12283d8df444 b74a22bb7cd9c76b950dd3439a10f1a9 { 'aliquot_tag': 'ALQ_444d8a69', 'gdc_sample_type': 'Primary Tumor' } C3N-01849.miRNA-Seq.T C3N-01849 GBM miRNA-Seq tumor CPT0224780009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTAGAG_S41_L002_R1_001.unaln.bam 228567039 BAM unaligned CPTAC3 3dbe979d-bd63-4379-9bf1-d5a114081b2e a3fc92c38e8b4f9cb4c8f89e694ba320 { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor' } C3N-01849.miRNA-Seq.T.hg38 C3N-01849 GBM miRNA-Seq tumor CPT0224780009 16162ec0-7b2d-40a5-ac4a-bb5b5cb57f5e_mirnaseq_gdc_realn.bam 252060926 BAM harmonized CPTAC3 c25da38d-81d8-4793-839d-6109462fa3d5 0ff6eb823c23c990f5f9caf6e8e0b261 { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01849.RNA-Seq.chimeric.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 c0404e18-9325-40f5-aeb0-43f86f2b2a32.rna_seq.chimeric.gdc_realn.bam 38349599 BAM chimeric harmonized CPTAC3 060023ea-f766-45ea-8827-0bafdac09379 b6f6f83f8d892af11941b62be29018bc { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01849.RNA-Seq.genomic.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 c0404e18-9325-40f5-aeb0-43f86f2b2a32.rna_seq.genomic.gdc_realn.bam 7510139811 BAM genomic harmonized CPTAC3 bd6147c1-7f48-4e40-a1c1-4f8778251c60 78fad76f3703f409c258ce79ccb220e9 { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01849.RNA-Seq.R1_L003.T C3N-01849 GBM RNA-Seq tumor CPT0224780009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R1_001.fastq.gz 3307839110 FASTQ R1_L003 unaligned CPTAC3 583387e2-75e7-4f09-be36-486effc226fd 275f694446a8e500c4f148c69f7dd131 { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01849.RNA-Seq.R2_L003.T C3N-01849 GBM RNA-Seq tumor CPT0224780009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R2_001.fastq.gz 3845272244 FASTQ R2_L003 unaligned CPTAC3 83d649cc-79e9-457a-9e7f-e0fb46c94f8a 6b50106dd2476b2133b3a33b3f73b759 { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01849.RNA-Seq.transcriptome.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 c0404e18-9325-40f5-aeb0-43f86f2b2a32.rna_seq.transcriptome.gdc_realn.bam 6978651930 BAM transcriptome harmonized CPTAC3 1007a9ad-0fcf-4c8b-8024-b28c78617a5d d790aec42d80b1cf4580645cf5d61a6e { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01849.RNA-Seq.chimeric.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 789b7e3a-9149-401f-843d-2c17f06b932c.rna_seq.chimeric.gdc_realn.bam 38337433 BAM chimeric harmonized CPTAC3 822efd01-9f45-41f2-a9ab-9c2511127750 900f5f6386d7da981314a4f4bc069cbc { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01849.RNA-Seq.genomic.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 789b7e3a-9149-401f-843d-2c17f06b932c.rna_seq.genomic.gdc_realn.bam 7511253933 BAM genomic harmonized CPTAC3 71bd0e47-7914-45c4-a405-d62c98fad960 608c8362bf5e55fc44440fae094a27f0 { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01849.RNA-Seq.R1_L003.T C3N-01849 GBM RNA-Seq tumor CPT0224780009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R1_001.fastq.gz 3307839110 FASTQ R1_L003 unaligned CPTAC3 583387e2-75e7-4f09-be36-486effc226fd 275f694446a8e500c4f148c69f7dd131 { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01849.RNA-Seq.R2_L003.T C3N-01849 GBM RNA-Seq tumor CPT0224780009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R2_001.fastq.gz 3845272244 FASTQ R2_L003 unaligned CPTAC3 83d649cc-79e9-457a-9e7f-e0fb46c94f8a 6b50106dd2476b2133b3a33b3f73b759 { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01849.RNA-Seq.transcriptome.T.hg38 C3N-01849 GBM RNA-Seq tumor CPT0224780009 789b7e3a-9149-401f-843d-2c17f06b932c.rna_seq.transcriptome.gdc_realn.bam 7944200702 BAM transcriptome harmonized CPTAC3 2a563866-7933-45a1-bb39-cf7b752b0d19 5d0d360fa5782d19e9d3bb7a81bec004 { 'aliquot_tag': 'ALQ_d4f297f8', 'gdc_sample_type': 'Primary Tumor' } C3N-01849.WGS.N C3N-01849 GBM WGS blood_normal CPT0224830002 CPT0224830002.WholeGenome.RP-2158.bam 26026553207 BAM aligned CPTAC3 41abf016-07f9-4ad3-a5d6-861a86fc439c e6e9c9e206b70981c1e4eab89c64feca { 'aliquot_tag': 'ALQ_c5a6cdb4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01849.WGS.N.hg38 C3N-01849 GBM WGS blood_normal CPT0224830002 bbc88737-e7c2-404f-a29c-d4eb9ad23e2d_wgs_gdc_realn.bam 78090125732 BAM harmonized CPTAC3 20c0f60b-3fab-4d2e-878b-23ad2d24d00a 1711ae80c896e021e0db28a9d227c358 { 'aliquot_tag': 'ALQ_c5a6cdb4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01849.WGS.T C3N-01849 GBM WGS tumor CPT0224780006 CPT0224780006.WholeGenome.RP-2158.bam 22035764736 BAM aligned CPTAC3 6a6f9bda-1e93-4fa1-83d0-dd3e624844de ef78a03d4dc1f8fdc6a28202aa056d29 { 'aliquot_tag': 'ALQ_444d8a69', 'gdc_sample_type': 'Primary Tumor' } @@ -27774,11 +29788,11 @@ C3N-01850.MethArray.Green.T C3N-01850 GBM Methylation Array tumor CPT0125260005 C3N-01850.MethArray.Red.T C3N-01850 GBM Methylation Array tumor CPT0125260005 203027390081_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 febfe0c8-2b32-4228-8ce8-05d2d4704778 cc4f2b557fa42da23092c5964f32928f { 'aliquot_tag': 'ALQ_ad43c370', 'gdc_sample_type': 'Primary Tumor' } C3N-01850.REP_92abb7a.miRNA-Seq.T C3N-01850 GBM miRNA-Seq tumor CPT0125270006 190228_UNC32-K00270_0151_AHYLY3BBXX_CACGAT_S31_L006_R1_001.unaln.bam 274271010 BAM unaligned CPTAC3 7060cc1e-8e41-48df-9775-ef103ac0e04e 0445ebf409594b10167ac6e088e3090d { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-01850.REP_92abb7a.miRNA-Seq.T.hg38 C3N-01850 GBM miRNA-Seq tumor CPT0125270006 f80ec1e0-8672-4149-b200-3e7db59812d5_mirnaseq_gdc_realn.bam 308899234 BAM harmonized CPTAC3 cf67421d-0794-434e-85b7-0d91eab3c4a1 060d4347c64fee090e112a5b150927ca { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-01850.REP_92abb7a.RNA-Seq.chimeric.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 9a3a9679-9c09-4071-b7f0-d7a319e676cb.rna_seq.chimeric.gdc_realn.bam 40182928 BAM chimeric harmonized CPTAC3 faeefc9c-0890-4837-8602-88ddd8484c9f b3492359d0be0e171e0e222a11370c2f { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-01850.REP_92abb7a.RNA-Seq.genomic.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 9a3a9679-9c09-4071-b7f0-d7a319e676cb.rna_seq.genomic.gdc_realn.bam 8167951384 BAM genomic harmonized CPTAC3 59d05d32-8659-448d-9949-d4af103f74d9 91acc50a0406df272af809618f5c3a0c { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-01850.REP_92abb7a.RNA-Seq.R1_L001.T C3N-01850 GBM RNA-Seq tumor CPT0125270006 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L001_R1_001.fastq.gz 3847474936 FASTQ R1_L001 unaligned CPTAC3 5da572da-3bd7-4c0c-86c3-1e86cc3482af 905279269a1c951e46742584a99e0aca { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-01850.REP_92abb7a.RNA-Seq.R2_L001.T C3N-01850 GBM RNA-Seq tumor CPT0125270006 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L001_R2_001.fastq.gz 4041617916 FASTQ R2_L001 unaligned CPTAC3 c11d25ee-91e0-40d1-abfa-cd21ed2df98a 95efb9bbbfea0e6ccdda41d01c89b90b { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-01850.REP_92abb7a.RNA-Seq.transcriptome.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 9a3a9679-9c09-4071-b7f0-d7a319e676cb.rna_seq.transcriptome.gdc_realn.bam 7969135775 BAM transcriptome harmonized CPTAC3 42749fba-ede2-47e5-96d4-bb290836bb3c 381abd360c40eed3ab2c94ab5bc7cc45 { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3N-01850.REP_92abb7a.RNA-Seq.chimeric.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 e3aa72b6-ebde-4613-a908-ac2af3c89446.rna_seq.chimeric.gdc_realn.bam 40144139 BAM chimeric harmonized CPTAC3 6e19444c-d775-49d1-8516-d3b463cbdb0f fb8ac6f1ec5cbeae7922b38c22948f84 { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3N-01850.REP_92abb7a.RNA-Seq.genomic.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 e3aa72b6-ebde-4613-a908-ac2af3c89446.rna_seq.genomic.gdc_realn.bam 8169138578 BAM genomic harmonized CPTAC3 c99bdcb0-df6b-4660-a6d3-43581f12e9f9 eea71896fa90a8ae13d80e1eda627b72 { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3N-01850.REP_92abb7a.RNA-Seq.R1_L001.T C3N-01850 GBM RNA-Seq tumor CPT0125270006 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L001_R1_001.fastq.gz 3847474936 FASTQ R1_L001 unaligned CPTAC3 5da572da-3bd7-4c0c-86c3-1e86cc3482af 905279269a1c951e46742584a99e0aca { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R1', 'lane': 'L001' } +C3N-01850.REP_92abb7a.RNA-Seq.R2_L001.T C3N-01850 GBM RNA-Seq tumor CPT0125270006 190426_UNC32-K00270_0167_AH7CK7BBXY_GGCATTCT-CTAGCTTG_S3_L001_R2_001.fastq.gz 4041617916 FASTQ R2_L001 unaligned CPTAC3 c11d25ee-91e0-40d1-abfa-cd21ed2df98a 95efb9bbbfea0e6ccdda41d01c89b90b { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R2', 'lane': 'L001' } +C3N-01850.REP_92abb7a.RNA-Seq.transcriptome.T.hg38 C3N-01850 GBM RNA-Seq tumor CPT0125270006 e3aa72b6-ebde-4613-a908-ac2af3c89446.rna_seq.transcriptome.gdc_realn.bam 9177665078 BAM transcriptome harmonized CPTAC3 571adea5-3548-4a9e-a846-a0c62b7b600e d8e9048fe1581af46165758cfa367000 { 'aliquot_tag': 'REP_92abb7a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-01850.REP_9995a6eb.MethArray.Green.T C3N-01850 GBM Methylation Array tumor CPT0125270009 203219650047_R08C01_Grn.idat 13676206 IDAT Green NA CPTAC3 986f4467-8c60-472b-b32c-afb23c642578 0f504f4dd24fbed25c9bd5b6c640cd02 { 'aliquot_tag': 'REP_9995a6eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } C3N-01850.REP_9995a6eb.MethArray.Red.T C3N-01850 GBM Methylation Array tumor CPT0125270009 203219650047_R08C01_Red.idat 13676206 IDAT Red NA CPTAC3 0acdbc29-be6b-4d09-a132-c64fb24fa5c8 fec8873d517068e0434bb6b7fef336d9 { 'aliquot_tag': 'REP_9995a6eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } C3N-01850.REP_9995a6eb.WGS.T C3N-01850 GBM WGS tumor CPT0125270009 CPT0125270009.WholeGenome.RP-1303.bam 78628387429 BAM aligned CPTAC3 24677690-6d0b-4926-93c8-f52e49a4979f 0bb6a4b6b274ba90bf40d6b33842b176 { 'aliquot_tag': 'REP_9995a6eb', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } @@ -27794,9 +29808,9 @@ C3N-01851.MethArray.Red.T C3N-01851 GBM Methylation Array tumor CPT0186100006 20 C3N-01851.miRNA-Seq.T C3N-01851 GBM miRNA-Seq tumor CPT0186100009 181219_UNC31-K00269_0173_BHYGJJBBXX_GATCAG_S9_L003_R1_001.unaln.bam 259629345 BAM unaligned CPTAC3 fe53c343-784d-4ded-979b-be7a6e11a043 dbc628bac05777e33d5265757ff00117 { 'aliquot_tag': 'ALQ_d090e00', 'gdc_sample_type': 'Primary Tumor' } C3N-01851.miRNA-Seq.T.hg38 C3N-01851 GBM miRNA-Seq tumor CPT0186100009 6f16f09b-03f9-4fc7-aa21-5da23f9cac5a_mirnaseq_gdc_realn.bam 291718248 BAM harmonized CPTAC3 7d236dc1-54be-467f-853f-23929e9e4203 764d0b54c52bf76563b34d433cd98b86 { 'aliquot_tag': 'ALQ_d090e00', 'gdc_sample_type': 'Primary Tumor' } C3N-01851.RNA-Seq.chimeric.T.hg38 C3N-01851 GBM RNA-Seq tumor CPT0186100009 59513d77-0829-482a-b400-786739b20d2f.rna_seq.chimeric.gdc_realn.bam 144568338 BAM chimeric harmonized CPTAC3 389cfe81-01ee-4bb1-8791-046f60653ed0 2f44f965470eeac13e5d0261783d37bf { 'aliquot_tag': 'ALQ_d090e00', 'gdc_sample_type': 'Primary Tumor' } -C3N-01851.RNA-Seq.genomic.T.hg38 C3N-01851 GBM RNA-Seq tumor CPT0186100009 59513d77-0829-482a-b400-786739b20d2f.rna_seq.genomic.gdc_realn.bam 8235849198 BAM genomic harmonized CPTAC3 1d938356-aee8-4f6a-bd50-20adf6ead89d 8fae163adef27687aa368c48e7ac293a { 'aliquot_tag': 'ALQ_d090e00', 'gdc_sample_type': 'Primary Tumor' } -C3N-01851.RNA-Seq.R1_L003.T C3N-01851 GBM RNA-Seq tumor CPT0186100009 181002_UNC31-K00269_0156_AHWN3HBBXX_GATCAG_S12_L003_R1_001.fastq.gz 3912185114 FASTQ R1_L003 unaligned CPTAC3 01bc3d1b-90a8-4045-a317-33d29575b67a c71079aa987d4b8b7b8b55515313194f { 'aliquot_tag': 'ALQ_d090e00', 'gdc_sample_type': 'Primary Tumor' } -C3N-01851.RNA-Seq.R2_L003.T C3N-01851 GBM RNA-Seq tumor CPT0186100009 181002_UNC31-K00269_0156_AHWN3HBBXX_GATCAG_S12_L003_R2_001.fastq.gz 4197953612 FASTQ R2_L003 unaligned CPTAC3 1054b7d7-4b9b-4700-bdef-e069dab8c849 381ec2241e4c415030fccafa70fc5cd9 { 'aliquot_tag': 'ALQ_d090e00', 'gdc_sample_type': 'Primary Tumor' } +C3N-01851.RNA-Seq.genomic.T.hg38 C3N-01851 GBM RNA-Seq tumor CPT0186100009 59513d77-0829-482a-b400-786739b20d2f.rna_seq.genomic.gdc_realn.bam 8235849198 BAM genomic harmonized CPTAC3 175fe42d-f76f-401b-9bdd-1f54ef5c5c8d 8fae163adef27687aa368c48e7ac293a { 'aliquot_tag': 'ALQ_d090e00', 'gdc_sample_type': 'Primary Tumor' } +C3N-01851.RNA-Seq.R1_L003.T C3N-01851 GBM RNA-Seq tumor CPT0186100009 181002_UNC31-K00269_0156_AHWN3HBBXX_GATCAG_S12_L003_R1_001.fastq.gz 3912185114 FASTQ R1_L003 unaligned CPTAC3 01bc3d1b-90a8-4045-a317-33d29575b67a c71079aa987d4b8b7b8b55515313194f { 'aliquot_tag': 'ALQ_d090e00', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01851.RNA-Seq.R2_L003.T C3N-01851 GBM RNA-Seq tumor CPT0186100009 181002_UNC31-K00269_0156_AHWN3HBBXX_GATCAG_S12_L003_R2_001.fastq.gz 4197953612 FASTQ R2_L003 unaligned CPTAC3 1054b7d7-4b9b-4700-bdef-e069dab8c849 381ec2241e4c415030fccafa70fc5cd9 { 'aliquot_tag': 'ALQ_d090e00', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-01851.RNA-Seq.transcriptome.T.hg38 C3N-01851 GBM RNA-Seq tumor CPT0186100009 59513d77-0829-482a-b400-786739b20d2f.rna_seq.transcriptome.gdc_realn.bam 10377982061 BAM transcriptome harmonized CPTAC3 ece7e613-8d57-4f4e-a545-b0b72c8129b0 b23041dc2da8db38631f6e9a312f46a0 { 'aliquot_tag': 'ALQ_d090e00', 'gdc_sample_type': 'Primary Tumor' } C3N-01851.WGS.N C3N-01851 GBM WGS blood_normal CPT0186120002 CPT0186120002.WholeGenome.RP-1303.bam 54343423025 BAM aligned CPTAC3 35864da6-e266-404c-ae01-c2beb343f37b cf4d224831c8b7e57d8103fa51a3d4ce { 'aliquot_tag': 'ALQ_e01b84e8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01851.WGS.N.hg38 C3N-01851 GBM WGS blood_normal CPT0186120002 ba85de62-a722-4f2a-a296-c62622195e86_wgs_gdc_realn.bam 77843271265 BAM harmonized CPTAC3 b9ed756a-1b5d-48a3-b82a-807f17803b39 07e4c13aee236cc3d006cc19fb9bfd3f { 'aliquot_tag': 'ALQ_e01b84e8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27811,9 +29825,9 @@ C3N-01852.MethArray.Red.T C3N-01852 GBM Methylation Array tumor CPT0182500006 20 C3N-01852.miRNA-Seq.T C3N-01852 GBM miRNA-Seq tumor CPT0182500009 181219_UNC31-K00269_0173_BHYGJJBBXX_TGACCA_S4_L003_R1_001.unaln.bam 222345231 BAM unaligned CPTAC3 1b62bae3-f01a-46da-914e-c1fa59cd41ed 2608cd1d8dd4ec3749aa841b535d672b { 'aliquot_tag': 'ALQ_62d76805', 'gdc_sample_type': 'Primary Tumor' } C3N-01852.miRNA-Seq.T.hg38 C3N-01852 GBM miRNA-Seq tumor CPT0182500009 da5714a0-9726-4a11-a99f-8e68d3b82749_mirnaseq_gdc_realn.bam 247750334 BAM harmonized CPTAC3 d3f3d950-1438-421f-921c-cc41c261eb79 3fa062348e1f055ae1ca47145aec4d1e { 'aliquot_tag': 'ALQ_62d76805', 'gdc_sample_type': 'Primary Tumor' } C3N-01852.RNA-Seq.chimeric.T.hg38 C3N-01852 GBM RNA-Seq tumor CPT0182500009 0cc4a23f-133c-4493-af38-b6b118bfafdd.rna_seq.chimeric.gdc_realn.bam 187643093 BAM chimeric harmonized CPTAC3 df3221e8-163b-40a3-923e-afd781d89c63 c012e02180c988ebf7cdb62a6ea33bff { 'aliquot_tag': 'ALQ_62d76805', 'gdc_sample_type': 'Primary Tumor' } -C3N-01852.RNA-Seq.genomic.T.hg38 C3N-01852 GBM RNA-Seq tumor CPT0182500009 0cc4a23f-133c-4493-af38-b6b118bfafdd.rna_seq.genomic.gdc_realn.bam 8345369856 BAM genomic harmonized CPTAC3 d10aabc6-e99e-41bf-b395-0bd08abf1c3d 1901aee6f7d5ed260b4efdb458737995 { 'aliquot_tag': 'ALQ_62d76805', 'gdc_sample_type': 'Primary Tumor' } -C3N-01852.RNA-Seq.R1_L001.T C3N-01852 GBM RNA-Seq tumor CPT0182500009 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3857772720 FASTQ R1_L001 unaligned CPTAC3 44954158-c233-4b38-ba9f-4478abefe2c8 dc2931ae49faf27c6496e247c81f36cd { 'aliquot_tag': 'ALQ_62d76805', 'gdc_sample_type': 'Primary Tumor' } -C3N-01852.RNA-Seq.R2_L001.T C3N-01852 GBM RNA-Seq tumor CPT0182500009 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4224237803 FASTQ R2_L001 unaligned CPTAC3 0710afd1-8d04-4b2b-971a-00b1b4e266ac 1e455e020ce105ab5289c45bc9d88105 { 'aliquot_tag': 'ALQ_62d76805', 'gdc_sample_type': 'Primary Tumor' } +C3N-01852.RNA-Seq.genomic.T.hg38 C3N-01852 GBM RNA-Seq tumor CPT0182500009 0cc4a23f-133c-4493-af38-b6b118bfafdd.rna_seq.genomic.gdc_realn.bam 8345369856 BAM genomic harmonized CPTAC3 dfa4742f-301e-4847-8eca-168219cca798 1901aee6f7d5ed260b4efdb458737995 { 'aliquot_tag': 'ALQ_62d76805', 'gdc_sample_type': 'Primary Tumor' } +C3N-01852.RNA-Seq.R1_L001.T C3N-01852 GBM RNA-Seq tumor CPT0182500009 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3857772720 FASTQ R1_L001 unaligned CPTAC3 44954158-c233-4b38-ba9f-4478abefe2c8 dc2931ae49faf27c6496e247c81f36cd { 'aliquot_tag': 'ALQ_62d76805', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01852.RNA-Seq.R2_L001.T C3N-01852 GBM RNA-Seq tumor CPT0182500009 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4224237803 FASTQ R2_L001 unaligned CPTAC3 0710afd1-8d04-4b2b-971a-00b1b4e266ac 1e455e020ce105ab5289c45bc9d88105 { 'aliquot_tag': 'ALQ_62d76805', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-01852.RNA-Seq.transcriptome.T.hg38 C3N-01852 GBM RNA-Seq tumor CPT0182500009 0cc4a23f-133c-4493-af38-b6b118bfafdd.rna_seq.transcriptome.gdc_realn.bam 9497050602 BAM transcriptome harmonized CPTAC3 d51bb637-c108-4dd9-af88-438d5ff2730a 461d4dafd80e3afa1efc0d8dbe4f9ccb { 'aliquot_tag': 'ALQ_62d76805', 'gdc_sample_type': 'Primary Tumor' } C3N-01852.WGS.N C3N-01852 GBM WGS blood_normal CPT0182540002 CPT0182540002.WholeGenome.RP-1303.bam 61047247103 BAM aligned CPTAC3 d95d27b3-f55c-4d48-9e04-b0add1e2f3fb 26239697a474144efe44fd8c02349a8d { 'aliquot_tag': 'ALQ_85174d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01852.WGS.N.hg38 C3N-01852 GBM WGS blood_normal CPT0182540002 5df57bba-1178-47d7-b964-08219811cd0b_wgs_gdc_realn.bam 87951231995 BAM harmonized CPTAC3 98128dc9-e9f2-49a5-b9d9-a6ed16f2086a bf1effe3fd2466d14d1ef07ed8f1dfdd { 'aliquot_tag': 'ALQ_85174d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27826,9 +29840,9 @@ C3N-01852.WXS.T.hg38 C3N-01852 GBM WXS tumor CPT0182500006 5f1e8acb-e97d-4915-96 C3N-01856.MethArray.Green.T C3N-01856 GBM Methylation Array tumor CPT0162100006 203028200023_R07C01_Grn.idat 13676232 IDAT Green NA CPTAC3 176fdf47-2881-46dd-b523-24cc0f187472 a30107997b80767c812f05dfb77ca3bf { 'aliquot_tag': 'ALQ_7c7325b0', 'gdc_sample_type': 'Primary Tumor' } C3N-01856.MethArray.Red.T C3N-01856 GBM Methylation Array tumor CPT0162100006 203028200023_R07C01_Red.idat 13676232 IDAT Red NA CPTAC3 82992075-3e9f-4692-a5b9-6f7bcc319c82 af89966114f1efc90f8a6c9bd455e40f { 'aliquot_tag': 'ALQ_7c7325b0', 'gdc_sample_type': 'Primary Tumor' } C3N-01856.RNA-Seq.chimeric.T.hg38 C3N-01856 GBM RNA-Seq tumor CPT0162100009 7024e80d-ec80-4399-ae2a-8a8493f54ed1.rna_seq.chimeric.gdc_realn.bam 114534263 BAM chimeric harmonized CPTAC3 187edc3e-8d6c-462c-9de7-18e638c098b3 dd8cbaffe58a15124c53c7d533df4879 { 'aliquot_tag': 'ALQ_eccc3821', 'gdc_sample_type': 'Primary Tumor' } -C3N-01856.RNA-Seq.genomic.T.hg38 C3N-01856 GBM RNA-Seq tumor CPT0162100009 7024e80d-ec80-4399-ae2a-8a8493f54ed1.rna_seq.genomic.gdc_realn.bam 9387023326 BAM genomic harmonized CPTAC3 c4f32b62-690f-49b1-854e-351a01cc0b0e 613d86f1367c683ac10dd69eb1e5cf5c { 'aliquot_tag': 'ALQ_eccc3821', 'gdc_sample_type': 'Primary Tumor' } -C3N-01856.RNA-Seq.R1_L003.T C3N-01856 GBM RNA-Seq tumor CPT0162100009 180502_UNC32-K00270_0094_BHTVLMBBXX_GCCAAT_S9_L003_R1_001.fastq.gz 3816425613 FASTQ R1_L003 unaligned CPTAC3 ed6bb432-cdeb-4851-860d-43b50894e82a e9da7d6f3ed3b0500883a11c0a13cf50 { 'aliquot_tag': 'ALQ_eccc3821', 'gdc_sample_type': 'Primary Tumor' } -C3N-01856.RNA-Seq.R2_L003.T C3N-01856 GBM RNA-Seq tumor CPT0162100009 180502_UNC32-K00270_0094_BHTVLMBBXX_GCCAAT_S9_L003_R2_001.fastq.gz 4200919889 FASTQ R2_L003 unaligned CPTAC3 9772e608-d91e-4d97-b16c-99dcbdd223e3 5361095fcf7d377785e41e528253c1fe { 'aliquot_tag': 'ALQ_eccc3821', 'gdc_sample_type': 'Primary Tumor' } +C3N-01856.RNA-Seq.genomic.T.hg38 C3N-01856 GBM RNA-Seq tumor CPT0162100009 7024e80d-ec80-4399-ae2a-8a8493f54ed1.rna_seq.genomic.gdc_realn.bam 9387023326 BAM genomic harmonized CPTAC3 334cc255-9fe6-4191-8e3f-a4c35a1e3808 613d86f1367c683ac10dd69eb1e5cf5c { 'aliquot_tag': 'ALQ_eccc3821', 'gdc_sample_type': 'Primary Tumor' } +C3N-01856.RNA-Seq.R1_L003.T C3N-01856 GBM RNA-Seq tumor CPT0162100009 180502_UNC32-K00270_0094_BHTVLMBBXX_GCCAAT_S9_L003_R1_001.fastq.gz 3816425613 FASTQ R1_L003 unaligned CPTAC3 ed6bb432-cdeb-4851-860d-43b50894e82a e9da7d6f3ed3b0500883a11c0a13cf50 { 'aliquot_tag': 'ALQ_eccc3821', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01856.RNA-Seq.R2_L003.T C3N-01856 GBM RNA-Seq tumor CPT0162100009 180502_UNC32-K00270_0094_BHTVLMBBXX_GCCAAT_S9_L003_R2_001.fastq.gz 4200919889 FASTQ R2_L003 unaligned CPTAC3 9772e608-d91e-4d97-b16c-99dcbdd223e3 5361095fcf7d377785e41e528253c1fe { 'aliquot_tag': 'ALQ_eccc3821', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-01856.RNA-Seq.transcriptome.T.hg38 C3N-01856 GBM RNA-Seq tumor CPT0162100009 7024e80d-ec80-4399-ae2a-8a8493f54ed1.rna_seq.transcriptome.gdc_realn.bam 10697722091 BAM transcriptome harmonized CPTAC3 d99d910d-6fca-4dee-bcd5-c04be5dde0ea ddf79483ed76ca07d7e0f6e863ca453e { 'aliquot_tag': 'ALQ_eccc3821', 'gdc_sample_type': 'Primary Tumor' } C3N-01856.WGS.N C3N-01856 GBM WGS blood_normal CPT0162120002 CPT0162120002.WholeGenome.RP-1303.bam 60328961663 BAM aligned CPTAC3 6767a546-337a-4e3e-abd8-10a7599eafb4 ad0d9b21801eb70c83b99b4e236dcf0c { 'aliquot_tag': 'ALQ_1deb2c9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01856.WGS.N.hg38 C3N-01856 GBM WGS blood_normal CPT0162120002 f10efa6b-8bd4-4cf3-ac29-40030b28813b_wgs_gdc_realn.bam 88047328190 BAM harmonized CPTAC3 9e90546a-b4c0-4061-ab38-a69473bad093 6a22a3edd4a2b0ee7cc400d69ff62112 { 'aliquot_tag': 'ALQ_1deb2c9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27843,9 +29857,9 @@ C3N-01857.MethArray.Red.T C3N-01857 GBM Methylation Array tumor CPT0162140007 20 C3N-01857.miRNA-Seq.T C3N-01857 GBM miRNA-Seq tumor CPT0162140010 181108_UNC31-K00269_0162_AH255GBBXY_CATTTT_S11_L001_R1_001.unaln.bam 253970312 BAM unaligned CPTAC3 fce14d60-f061-4b9d-87a7-d9f3bead7b80 03133ff433632889cc276135cfa5c1be { 'aliquot_tag': 'ALQ_798b1704', 'gdc_sample_type': 'Primary Tumor' } C3N-01857.miRNA-Seq.T.hg38 C3N-01857 GBM miRNA-Seq tumor CPT0162140010 d7454085-f11b-48e0-9e64-5897f79af354_mirnaseq_gdc_realn.bam 281095814 BAM harmonized CPTAC3 3654a2cc-16d9-4660-8fa5-eed7efba3415 ccbcdafe9d38349db21250577472fb07 { 'aliquot_tag': 'ALQ_798b1704', 'gdc_sample_type': 'Primary Tumor' } C3N-01857.RNA-Seq.chimeric.T.hg38 C3N-01857 GBM RNA-Seq tumor CPT0162140010 299ce7ef-d929-4311-ad76-ba5938c46ebd.rna_seq.chimeric.gdc_realn.bam 150041169 BAM chimeric harmonized CPTAC3 44a5b3ce-6ab1-4818-afbc-6cc78503ee1c 83e65bc05836e7bcc59ca2f8d6c6be15 { 'aliquot_tag': 'ALQ_798b1704', 'gdc_sample_type': 'Primary Tumor' } -C3N-01857.RNA-Seq.genomic.T.hg38 C3N-01857 GBM RNA-Seq tumor CPT0162140010 299ce7ef-d929-4311-ad76-ba5938c46ebd.rna_seq.genomic.gdc_realn.bam 9255743064 BAM genomic harmonized CPTAC3 4f411504-f71a-49b5-bcf6-2ad309e7439a c98f44ca1360130969daa6f122a05f4a { 'aliquot_tag': 'ALQ_798b1704', 'gdc_sample_type': 'Primary Tumor' } -C3N-01857.RNA-Seq.R1_L006.T C3N-01857 GBM RNA-Seq tumor CPT0162140010 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L006_R1_001.fastq.gz 4388086445 FASTQ R1_L006 unaligned CPTAC3 75787440-f3e5-48f8-959f-9ff711677d3d 9a40add875717147682d0936339b7d6a { 'aliquot_tag': 'ALQ_798b1704', 'gdc_sample_type': 'Primary Tumor' } -C3N-01857.RNA-Seq.R2_L006.T C3N-01857 GBM RNA-Seq tumor CPT0162140010 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L006_R2_001.fastq.gz 5012516281 FASTQ R2_L006 unaligned CPTAC3 5d5a71db-4335-4e75-bdbd-3f23655710be 2df56b5f6c60541ecb1702981ab7c246 { 'aliquot_tag': 'ALQ_798b1704', 'gdc_sample_type': 'Primary Tumor' } +C3N-01857.RNA-Seq.genomic.T.hg38 C3N-01857 GBM RNA-Seq tumor CPT0162140010 299ce7ef-d929-4311-ad76-ba5938c46ebd.rna_seq.genomic.gdc_realn.bam 9255743064 BAM genomic harmonized CPTAC3 6229ca6d-1420-440d-9e42-7887697ae85f c98f44ca1360130969daa6f122a05f4a { 'aliquot_tag': 'ALQ_798b1704', 'gdc_sample_type': 'Primary Tumor' } +C3N-01857.RNA-Seq.R1_L006.T C3N-01857 GBM RNA-Seq tumor CPT0162140010 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L006_R1_001.fastq.gz 4388086445 FASTQ R1_L006 unaligned CPTAC3 75787440-f3e5-48f8-959f-9ff711677d3d 9a40add875717147682d0936339b7d6a { 'aliquot_tag': 'ALQ_798b1704', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01857.RNA-Seq.R2_L006.T C3N-01857 GBM RNA-Seq tumor CPT0162140010 180516_UNC31-K00269_0129_AHTWLFBBXX_GGCTAC_S1_L006_R2_001.fastq.gz 5012516281 FASTQ R2_L006 unaligned CPTAC3 5d5a71db-4335-4e75-bdbd-3f23655710be 2df56b5f6c60541ecb1702981ab7c246 { 'aliquot_tag': 'ALQ_798b1704', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-01857.RNA-Seq.transcriptome.T.hg38 C3N-01857 GBM RNA-Seq tumor CPT0162140010 299ce7ef-d929-4311-ad76-ba5938c46ebd.rna_seq.transcriptome.gdc_realn.bam 9728345516 BAM transcriptome harmonized CPTAC3 e1403206-c003-4e75-b1da-2020b8295a4b a7863567ef9fe8547f7f2a9cf4f02fef { 'aliquot_tag': 'ALQ_798b1704', 'gdc_sample_type': 'Primary Tumor' } C3N-01857.WGS.N C3N-01857 GBM WGS blood_normal CPT0162170002 CPT0162170002.WholeGenome.RP-1303.bam 64143017590 BAM aligned CPTAC3 c9c8b532-e688-453b-8cd5-3b3571ecdf85 2f058658f670d11d233839aab9061856 { 'aliquot_tag': 'ALQ_c93e3db9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01857.WGS.N.hg38 C3N-01857 GBM WGS blood_normal CPT0162170002 3d771b8a-a107-41cc-b850-dd9639359d4e_wgs_gdc_realn.bam 92384124382 BAM harmonized CPTAC3 159e558f-428b-40aa-b176-ec3aeed9cd15 879106d632fd47ebc5b0730da33717e6 { 'aliquot_tag': 'ALQ_c93e3db9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -27860,12 +29874,15 @@ C3N-01858.MethArray.Red.T C3N-01858 HNSCC Methylation Array tumor CPT0163840006 C3N-01858.miRNA-Seq.T C3N-01858 HNSCC miRNA-Seq tumor CPT0163840009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGGCG_S33_L002_R1_001.unaln.bam 207901865 BAM unaligned CPTAC3 4ccc1ebf-8248-4795-801a-cd143b77b1ab 3e83b0b6d194f7824b14ad542b1c65e6 { 'aliquot_tag': 'ALQ_9834c49d', 'gdc_sample_type': 'Primary Tumor' } C3N-01858.miRNA-Seq.T.hg38 C3N-01858 HNSCC miRNA-Seq tumor CPT0163840009 13ed8cd1-082e-496c-bc11-6e35c5a6ba6d_mirnaseq_gdc_realn.bam 239186255 BAM harmonized CPTAC3 745ce889-7926-4e55-9b2d-9bc9da32ac8b 5f5f9ae46bd30b1e180bb56aee5d87c8 { 'aliquot_tag': 'ALQ_9834c49d', 'gdc_sample_type': 'Primary Tumor' } C3N-01858.RNA-Seq.chimeric.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 6986dd77-798c-42af-bbeb-bee3976f33e5.rna_seq.chimeric.gdc_realn.bam 78424555 BAM chimeric harmonized CPTAC3 d9ada9fb-b35c-4a6e-a964-1a00fa1c0949 d79cabcd03d551e8985fee260d1bd084 { 'aliquot_tag': 'ALQ_9834c49d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01858.RNA-Seq.genomic.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 6986dd77-798c-42af-bbeb-bee3976f33e5.rna_seq.genomic.gdc_realn.bam 6209656160 BAM genomic harmonized CPTAC3 06c4eb1f-4033-40c3-b5ff-b1bdbee24913 ef83c1e9d3f46519ffc2ab6777ba1e83 { 'aliquot_tag': 'ALQ_9834c49d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01858.RNA-Seq.R1_L001.T C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L001_R1_001.fastq.gz 2878963606 FASTQ R1_L001 unaligned CPTAC3 bae560c8-d7af-44f5-965a-da697a6e0e1c 0ccac52b9beb7d9c33907d7985e0106b { 'aliquot_tag': 'ALQ_9834c49d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01858.RNA-Seq.R1_.T C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 20210714_P1_E1_WB7988_plate1_S49_R1_001.fastq.gz 6405948347 FASTQ R1_ unaligned CPTAC3 bf3622fe-6ee6-4a63-88f7-696916e75a5d 3aca44fb859358a82936412944b2e8c2 { 'aliquot_tag': 'ALQ_ab908ffe', 'gdc_sample_type': 'Primary Tumor' } -C3N-01858.RNA-Seq.R2_L001.T C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L001_R2_001.fastq.gz 3196094888 FASTQ R2_L001 unaligned CPTAC3 9f3e8507-33fa-4ac0-8a7b-3254f592d3b0 dbce8af3eab97e8f86454eed347aa0a4 { 'aliquot_tag': 'ALQ_9834c49d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01858.RNA-Seq.R2_.T C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 20210714_P1_E1_WB7988_plate1_S49_R2_001.fastq.gz 6600620434 FASTQ R2_ unaligned CPTAC3 74695714-ccc5-4c1e-bbbd-03c1f3f37dd3 37929447c4b7984b62435b9d9eca21de { 'aliquot_tag': 'ALQ_ab908ffe', 'gdc_sample_type': 'Primary Tumor' } +C3N-01858.RNA-Seq.chimeric.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 577c76d3-7857-4986-b255-703f861399cf.rna_seq.chimeric.gdc_realn.bam 179341851 BAM chimeric harmonized CPTAC3 72eee029-2d5f-482b-bcc6-afb56a5e645c f3a2bde32dd00804515a813e0c6f6ca9 { 'aliquot_tag': 'ALQ_ab908ffe', 'gdc_sample_type': 'Primary Tumor' } +C3N-01858.RNA-Seq.genomic.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 6986dd77-798c-42af-bbeb-bee3976f33e5.rna_seq.genomic.gdc_realn.bam 6209656160 BAM genomic harmonized CPTAC3 834109e1-d544-4251-aae1-5e4351b2528d ef83c1e9d3f46519ffc2ab6777ba1e83 { 'aliquot_tag': 'ALQ_9834c49d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01858.RNA-Seq.genomic.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 577c76d3-7857-4986-b255-703f861399cf.rna_seq.genomic.gdc_realn.bam 9246584694 BAM genomic harmonized CPTAC3 7b974187-2778-40bd-80a0-f28870ef72bb 427ee056fe728c8c4bbcbd138b4a7cb7 { 'aliquot_tag': 'ALQ_ab908ffe', 'gdc_sample_type': 'Primary Tumor' } +C3N-01858.RNA-Seq.R1_L001.T C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L001_R1_001.fastq.gz 2878963606 FASTQ R1_L001 unaligned CPTAC3 bae560c8-d7af-44f5-965a-da697a6e0e1c 0ccac52b9beb7d9c33907d7985e0106b { 'aliquot_tag': 'ALQ_9834c49d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01858.RNA-Seq.R2_L001.T C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L001_R2_001.fastq.gz 3196094888 FASTQ R2_L001 unaligned CPTAC3 9f3e8507-33fa-4ac0-8a7b-3254f592d3b0 dbce8af3eab97e8f86454eed347aa0a4 { 'aliquot_tag': 'ALQ_9834c49d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01858.RNA-Seq.T C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 20210714_P1_E1_WB7988_plate1_S49_R1_001.fastq.gz 6405948347 FASTQ unaligned CPTAC3 bf3622fe-6ee6-4a63-88f7-696916e75a5d 3aca44fb859358a82936412944b2e8c2 +C3N-01858.RNA-Seq.T C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 20210714_P1_E1_WB7988_plate1_S49_R2_001.fastq.gz 6600620434 FASTQ unaligned CPTAC3 74695714-ccc5-4c1e-bbbd-03c1f3f37dd3 37929447c4b7984b62435b9d9eca21de C3N-01858.RNA-Seq.transcriptome.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0163840009 6986dd77-798c-42af-bbeb-bee3976f33e5.rna_seq.transcriptome.gdc_realn.bam 7978032881 BAM transcriptome harmonized CPTAC3 1c741da1-2e45-4e6c-87c9-e128ad60e382 8e4c6d65b4a55676bca4adbf5c2339fc { 'aliquot_tag': 'ALQ_9834c49d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01858.RNA-Seq.transcriptome.T.hg38 C3N-01858 HNSCC RNA-Seq tumor CPT0314880011 577c76d3-7857-4986-b255-703f861399cf.rna_seq.transcriptome.gdc_realn.bam 5418417712 BAM transcriptome harmonized CPTAC3 22cdfc5e-9345-49a8-9d7a-5a76d9e6ea69 55cd9d84b1003511c83c390512182b2a { 'aliquot_tag': 'ALQ_ab908ffe', 'gdc_sample_type': 'Primary Tumor' } C3N-01858.WGS.N C3N-01858 HNSCC WGS blood_normal CPT0163900002 CPT0163900002.WholeGenome.RP-1303.bam 57736901249 BAM aligned CPTAC3 c62f6004-2986-4bb7-b910-9578621c9f7a 23b72dbfab783d18c10192fc0d9a1828 { 'aliquot_tag': 'ALQ_313a6870', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01858.WGS.N.hg38 C3N-01858 HNSCC WGS blood_normal CPT0163900002 df6e28a1-8dd7-481b-b12a-c8ebd2fd973d_wgs_gdc_realn.bam 85073140408 BAM harmonized CPTAC3 86358fb6-9951-4ce5-8868-46b52bc57403 1075c0b7df3954634e7bdc8345c48e01 { 'aliquot_tag': 'ALQ_313a6870', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01858.WGS.T C3N-01858 HNSCC WGS tumor CPT0163840006 CPT0163840006.WholeGenome.RP-1303.bam 80355628566 BAM aligned CPTAC3 be7670fa-a7c8-4cca-b02c-dac64f280c26 7425ae22e83ecf73e4e6ea7d74931a3b { 'aliquot_tag': 'ALQ_88bd90c', 'gdc_sample_type': 'Primary Tumor' } @@ -27879,12 +29896,15 @@ C3N-01859.MethArray.Red.T C3N-01859 HNSCC Methylation Array tumor CPT0163910006 C3N-01859.miRNA-Seq.T C3N-01859 HNSCC miRNA-Seq tumor CPT0163910009 190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L002_R1_001.unaln.bam 192200176 BAM unaligned CPTAC3 77db198e-3ac3-40ed-956e-b667e5a5c3cc 8b24d11b512841edf9bbd37ee8136eee { 'aliquot_tag': 'ALQ_9b889848', 'gdc_sample_type': 'Primary Tumor' } C3N-01859.miRNA-Seq.T.hg38 C3N-01859 HNSCC miRNA-Seq tumor CPT0163910009 e133fcde-9525-40e1-9d94-8544fb4399d6_mirnaseq_gdc_realn.bam 214133370 BAM harmonized CPTAC3 f79a90b2-0352-4fe7-888b-64841b83618e 2451d6052645ffd6cdc4244449d0361c { 'aliquot_tag': 'ALQ_9b889848', 'gdc_sample_type': 'Primary Tumor' } C3N-01859.RNA-Seq.chimeric.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 5ad85fda-6ab0-4281-8af4-aab9a3022a7d.rna_seq.chimeric.gdc_realn.bam 94613484 BAM chimeric harmonized CPTAC3 b7348be1-22a7-43e1-bc13-cac4c3d8eb9a e0fe8e3a877d2ae984440347f0c5e7fd { 'aliquot_tag': 'ALQ_9b889848', 'gdc_sample_type': 'Primary Tumor' } -C3N-01859.RNA-Seq.genomic.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 5ad85fda-6ab0-4281-8af4-aab9a3022a7d.rna_seq.genomic.gdc_realn.bam 6488743473 BAM genomic harmonized CPTAC3 9df4154c-6d41-444a-b636-d40b05a89c24 5b970ac8226b725bf6085cbf3e5297c0 { 'aliquot_tag': 'ALQ_9b889848', 'gdc_sample_type': 'Primary Tumor' } -C3N-01859.RNA-Seq.R1_L001.T C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3033398658 FASTQ R1_L001 unaligned CPTAC3 7178c94c-fbf8-4692-bec4-3147049203de cf37cecc2fcc9b6e5eab3513e9a5c350 { 'aliquot_tag': 'ALQ_9b889848', 'gdc_sample_type': 'Primary Tumor' } -C3N-01859.RNA-Seq.R1_.T C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 20210714_P1_D1_WB7988_plate1_S37_R1_001.fastq.gz 5710099415 FASTQ R1_ unaligned CPTAC3 acab6dfb-8de0-454f-8143-8c00d1e682f2 b6148be5429495ec590ffd6e6ccfc2ce { 'aliquot_tag': 'ALQ_6ddc3e2a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01859.RNA-Seq.R2_L001.T C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L001_R2_001.fastq.gz 3331327045 FASTQ R2_L001 unaligned CPTAC3 3e2513e3-1bbd-4e76-8e87-cc7e44061857 f70daf1825ceec8079757136556cc36e { 'aliquot_tag': 'ALQ_9b889848', 'gdc_sample_type': 'Primary Tumor' } -C3N-01859.RNA-Seq.R2_.T C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 20210714_P1_D1_WB7988_plate1_S37_R2_001.fastq.gz 5912647006 FASTQ R2_ unaligned CPTAC3 16de1515-fe26-412f-a724-03e7953e7dc4 a78dfee37287b2eb5f58bc36e57a9a1b { 'aliquot_tag': 'ALQ_6ddc3e2a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01859.RNA-Seq.chimeric.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 bd4d9c1c-d1b7-49b7-aa3b-7960262a89ed.rna_seq.chimeric.gdc_realn.bam 143953918 BAM chimeric harmonized CPTAC3 daa0492f-3ee0-4136-986d-a865195dfd98 5e57c0f5276a69cfc9f8e6b1a96f30c6 { 'aliquot_tag': 'ALQ_6ddc3e2a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01859.RNA-Seq.genomic.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 5ad85fda-6ab0-4281-8af4-aab9a3022a7d.rna_seq.genomic.gdc_realn.bam 6488743473 BAM genomic harmonized CPTAC3 a6eb0a89-ca2b-4e01-9424-79387b0d6df2 5b970ac8226b725bf6085cbf3e5297c0 { 'aliquot_tag': 'ALQ_9b889848', 'gdc_sample_type': 'Primary Tumor' } +C3N-01859.RNA-Seq.genomic.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 bd4d9c1c-d1b7-49b7-aa3b-7960262a89ed.rna_seq.genomic.gdc_realn.bam 8520904033 BAM genomic harmonized CPTAC3 fae85f0a-9056-4b4a-b7be-bb8431a64e2e d7b635cd475825d6ea618161fd6e6fd8 { 'aliquot_tag': 'ALQ_6ddc3e2a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01859.RNA-Seq.R1_L001.T C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3033398658 FASTQ R1_L001 unaligned CPTAC3 7178c94c-fbf8-4692-bec4-3147049203de cf37cecc2fcc9b6e5eab3513e9a5c350 { 'aliquot_tag': 'ALQ_9b889848', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01859.RNA-Seq.R2_L001.T C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 190219_UNC31-K00269_0194_AH3V53BBXY_TAGCTT_S2_L001_R2_001.fastq.gz 3331327045 FASTQ R2_L001 unaligned CPTAC3 3e2513e3-1bbd-4e76-8e87-cc7e44061857 f70daf1825ceec8079757136556cc36e { 'aliquot_tag': 'ALQ_9b889848', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01859.RNA-Seq.T C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 20210714_P1_D1_WB7988_plate1_S37_R1_001.fastq.gz 5710099415 FASTQ unaligned CPTAC3 acab6dfb-8de0-454f-8143-8c00d1e682f2 b6148be5429495ec590ffd6e6ccfc2ce +C3N-01859.RNA-Seq.T C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 20210714_P1_D1_WB7988_plate1_S37_R2_001.fastq.gz 5912647006 FASTQ unaligned CPTAC3 16de1515-fe26-412f-a724-03e7953e7dc4 a78dfee37287b2eb5f58bc36e57a9a1b C3N-01859.RNA-Seq.transcriptome.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0163910009 5ad85fda-6ab0-4281-8af4-aab9a3022a7d.rna_seq.transcriptome.gdc_realn.bam 8404711687 BAM transcriptome harmonized CPTAC3 3014901c-9947-4e43-ae64-ebd6953b6910 7adc78e06287f0d1707cad6babc8d6bb { 'aliquot_tag': 'ALQ_9b889848', 'gdc_sample_type': 'Primary Tumor' } +C3N-01859.RNA-Seq.transcriptome.T.hg38 C3N-01859 HNSCC RNA-Seq tumor CPT0314910011 bd4d9c1c-d1b7-49b7-aa3b-7960262a89ed.rna_seq.transcriptome.gdc_realn.bam 6872802608 BAM transcriptome harmonized CPTAC3 2cf021fe-f402-401d-a7a0-1f5e8c8ca6da 45d326b534e7d4c8bebbbe1719e16337 { 'aliquot_tag': 'ALQ_6ddc3e2a', 'gdc_sample_type': 'Primary Tumor' } C3N-01859.WGS.N C3N-01859 HNSCC WGS blood_normal CPT0163950002 CPT0163950002.WholeGenome.RP-1303.bam 70929559318 BAM aligned CPTAC3 aaf6fe09-cced-4880-93c3-34862faf3acd 26295a378bb6c8553fcc48aae10a0631 { 'aliquot_tag': 'ALQ_f9dae700', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01859.WGS.N.hg38 C3N-01859 HNSCC WGS blood_normal CPT0163950002 7450df27-83a7-4d2a-ba70-02486c38bc94_wgs_gdc_realn.bam 103818412879 BAM harmonized CPTAC3 1e6ad2f5-ab4c-4b06-badd-2d0d246a52bf 0cf2325efb7b2288915dc7150a0b7800 { 'aliquot_tag': 'ALQ_f9dae700', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01859.WGS.T C3N-01859 HNSCC WGS tumor CPT0163910006 CPT0163910006.WholeGenome.RP-1303.bam 62525738183 BAM aligned CPTAC3 4a576f53-3615-4ed4-bc63-8eca44038e13 ab7a16a042157b725a8acfb4d13f354b { 'aliquot_tag': 'ALQ_b3785d9', 'gdc_sample_type': 'Primary Tumor' } @@ -27897,11 +29917,11 @@ C3N-01871.MethArray.Green.T C3N-01871 UCEC Methylation Array tumor CPT0117010007 C3N-01871.MethArray.Red.T C3N-01871 UCEC Methylation Array tumor CPT0117010007 203219640160_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 865d1bce-ca5d-46c3-af86-6b4ae094d8e9 8dff64c09dca93d5429973fbbde85a92 { 'aliquot_tag': 'ALQ_a5b5c98d', 'gdc_sample_type': 'Primary Tumor' } C3N-01871.miRNA-Seq.T C3N-01871 UCEC miRNA-Seq tumor CPT0117010010 190108_UNC31-K00269_0176_AHYGLVBBXX_ATCACG_S1_L004_R1_001.unaln.bam 182866974 BAM unaligned CPTAC3 c5b082a0-f7be-4823-97bd-70af61e01373 343aefeaedec340bbe92562e98911520 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor' } C3N-01871.miRNA-Seq.T.hg38 C3N-01871 UCEC miRNA-Seq tumor CPT0117010010 d9d92907-77f7-4606-962b-912a75f4c70b_mirnaseq_gdc_realn.bam 204680613 BAM harmonized CPTAC3 16290019-d482-4f0f-842d-6479772d8fef fd0dafcd2a4c7ac6c8a065b079e98193 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01871.RNA-Seq.chimeric.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 8a136a0d-cd0e-4aec-b4e8-3066c2c8e2dc.rna_seq.chimeric.gdc_realn.bam 86847933 BAM chimeric harmonized CPTAC3 4d4af470-8c20-4583-ba9e-ffd8b6dde0ad 777562ce6129972f388b718aa8ddad90 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01871.RNA-Seq.genomic.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 8a136a0d-cd0e-4aec-b4e8-3066c2c8e2dc.rna_seq.genomic.gdc_realn.bam 10208417282 BAM genomic harmonized CPTAC3 5d740431-8dde-4abe-88e5-955b4d1124ba 83eab47c4540a9bd4173a7f421daf0d2 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01871.RNA-Seq.R1_L003.T C3N-01871 UCEC RNA-Seq tumor CPT0117010010 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L003_R1_001.fastq.gz 5112789242 FASTQ R1_L003 unaligned CPTAC3 c582219c-ff38-4076-b3b3-ddf8067c82b1 aa6dfb9109ed36678efea7aa1fddc1a1 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01871.RNA-Seq.R2_L003.T C3N-01871 UCEC RNA-Seq tumor CPT0117010010 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L003_R2_001.fastq.gz 5039604970 FASTQ R2_L003 unaligned CPTAC3 5ffcee57-ae42-445e-9a13-7ccc027dd62d 0ad50d433e5ae0caaf2fb9cb3d277f52 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor' } -C3N-01871.RNA-Seq.transcriptome.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 8a136a0d-cd0e-4aec-b4e8-3066c2c8e2dc.rna_seq.transcriptome.gdc_realn.bam 10638707674 BAM transcriptome harmonized CPTAC3 6775033f-d07e-4ebd-b554-33a20348775d 01215bed5a4f9c3bd673b967e56077e2 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01871.RNA-Seq.chimeric.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 9d0aad0b-6f41-4d86-9ce2-5c1a1b99ab84.rna_seq.chimeric.gdc_realn.bam 86828047 BAM chimeric harmonized CPTAC3 fc6f0f94-eba8-4b11-bf03-367d1423c0d7 f791e6fb9c1dd2474e72039fcf1ce147 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01871.RNA-Seq.genomic.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 9d0aad0b-6f41-4d86-9ce2-5c1a1b99ab84.rna_seq.genomic.gdc_realn.bam 10210381649 BAM genomic harmonized CPTAC3 cadac63a-657d-483b-8325-0916bb8415ce 4f64fa7dd86a7fc809a2a77e4168b30f { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor' } +C3N-01871.RNA-Seq.R1_L003.T C3N-01871 UCEC RNA-Seq tumor CPT0117010010 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L003_R1_001.fastq.gz 5112789242 FASTQ R1_L003 unaligned CPTAC3 c582219c-ff38-4076-b3b3-ddf8067c82b1 aa6dfb9109ed36678efea7aa1fddc1a1 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01871.RNA-Seq.R2_L003.T C3N-01871 UCEC RNA-Seq tumor CPT0117010010 190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L003_R2_001.fastq.gz 5039604970 FASTQ R2_L003 unaligned CPTAC3 5ffcee57-ae42-445e-9a13-7ccc027dd62d 0ad50d433e5ae0caaf2fb9cb3d277f52 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01871.RNA-Seq.transcriptome.T.hg38 C3N-01871 UCEC RNA-Seq tumor CPT0117010010 9d0aad0b-6f41-4d86-9ce2-5c1a1b99ab84.rna_seq.transcriptome.gdc_realn.bam 12155849430 BAM transcriptome harmonized CPTAC3 4913e64b-c853-4f27-bf59-160e2d5a7ed0 8386c7c09b76f26eba2010ca651533f8 { 'aliquot_tag': 'ALQ_22ca6d6f', 'gdc_sample_type': 'Primary Tumor' } C3N-01871.WGS.N C3N-01871 UCEC WGS blood_normal CPT0117110002 CPT0117110002.WholeGenome.RP-1303.bam 64308827611 BAM aligned CPTAC3 0bc9a0c6-0d57-4cfd-b767-0518abdc0b9f bd1ba3aa346ce6bc91913d93c4ac0fb3 { 'aliquot_tag': 'ALQ_1e83eea7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01871.WGS.N.hg38 C3N-01871 UCEC WGS blood_normal CPT0117110002 15e2d9c7-449e-4c2d-be94-23fd0be95b3f_wgs_gdc_realn.bam 93851568090 BAM harmonized CPTAC3 3a600d57-b013-4ed1-897a-286cd286bbd4 7356ff4c015db76d83d51debdeb890fe { 'aliquot_tag': 'ALQ_1e83eea7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01871.WGS.T C3N-01871 UCEC WGS tumor CPT0117010007 CPT0117010007.WholeGenome.RP-1303.bam 63503042836 BAM aligned CPTAC3 70be389b-0730-4f09-9eab-fdfdaaff39bc d81be6c39ca0b59688a6bfb790b15ffc { 'aliquot_tag': 'ALQ_a5b5c98d', 'gdc_sample_type': 'Primary Tumor' } @@ -27914,11 +29934,11 @@ C3N-01873.MethArray.Green.T C3N-01873 UCEC Methylation Array tumor CPT0117230006 C3N-01873.MethArray.Red.T C3N-01873 UCEC Methylation Array tumor CPT0117230006 203219640157_R02C01_Red.idat 13676227 IDAT Red NA CPTAC3 c0c8ec2f-0076-4caf-b82c-2ee469b703cf a7e4ecf5393089c0bc478c3486240569 { 'aliquot_tag': 'ALQ_e5ba0b70', 'gdc_sample_type': 'Primary Tumor' } C3N-01873.miRNA-Seq.T C3N-01873 UCEC miRNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGAGC_S26_L005_R1_001.unaln.bam 106503751 BAM unaligned CPTAC3 e3eb4a88-12a4-4d1b-b77e-611241a02bec f7fdbe1ee5a6d392c482033da553d865 { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor' } C3N-01873.miRNA-Seq.T.hg38 C3N-01873 UCEC miRNA-Seq tumor CPT0117230009 7073ab2d-0ad5-46e4-a343-5aaf22655e1e_mirnaseq_gdc_realn.bam 117207801 BAM harmonized CPTAC3 bbee6544-713f-4666-a873-31cbeedb1704 40016184b7968939c156798bb2360139 { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01873.RNA-Seq.chimeric.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 8cb9ca0a-8f63-40bd-bf8b-eaadb1a9d259.rna_seq.chimeric.gdc_realn.bam 60496768 BAM chimeric harmonized CPTAC3 51366e25-d726-460b-be60-6462f53f8e32 3518e3ab521999eabea166fde4551385 { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01873.RNA-Seq.genomic.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 8cb9ca0a-8f63-40bd-bf8b-eaadb1a9d259.rna_seq.genomic.gdc_realn.bam 10400939418 BAM genomic harmonized CPTAC3 dcec11b4-d175-4ac1-8e69-ad55d3c3c1e6 46933dd4bbc8add5dc8664f04deed2a1 { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01873.RNA-Seq.R1_L002.T C3N-01873 UCEC RNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0177_BH32KTBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4434120095 FASTQ R1_L002 unaligned CPTAC3 f90fd46f-b7f0-4fda-8263-3474ed77d522 466d01ebaa1d4bf6f1d1e227b4dbbf7a { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01873.RNA-Seq.R2_L002.T C3N-01873 UCEC RNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0177_BH32KTBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4662189253 FASTQ R2_L002 unaligned CPTAC3 47e0c561-0024-40fa-8129-855e50f14a27 fb39eb073b484b6ea2a0262e327cdb48 { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01873.RNA-Seq.transcriptome.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 8cb9ca0a-8f63-40bd-bf8b-eaadb1a9d259.rna_seq.transcriptome.gdc_realn.bam 8410491313 BAM transcriptome harmonized CPTAC3 c21c1f96-94c5-45c2-892f-eccde5c0ae73 51d46790f49a86187d1ba2f268059d8e { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01873.RNA-Seq.chimeric.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 414d2f5e-aba8-46ff-89db-a8399e6cb807.rna_seq.chimeric.gdc_realn.bam 60486315 BAM chimeric harmonized CPTAC3 6df890ce-f2d0-48af-8614-84dbde3f9304 b46790842b431b5f86b75ef40e59e3ab { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01873.RNA-Seq.genomic.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 414d2f5e-aba8-46ff-89db-a8399e6cb807.rna_seq.genomic.gdc_realn.bam 10402417053 BAM genomic harmonized CPTAC3 12555655-d4e6-4a32-b773-a6b5faf3d4c8 f7c2158735f7332e9c162bc1a14628b4 { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01873.RNA-Seq.R1_L002.T C3N-01873 UCEC RNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0177_BH32KTBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4434120095 FASTQ R1_L002 unaligned CPTAC3 f90fd46f-b7f0-4fda-8263-3474ed77d522 466d01ebaa1d4bf6f1d1e227b4dbbf7a { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01873.RNA-Seq.R2_L002.T C3N-01873 UCEC RNA-Seq tumor CPT0117230009 190108_UNC31-K00269_0177_BH32KTBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4662189253 FASTQ R2_L002 unaligned CPTAC3 47e0c561-0024-40fa-8129-855e50f14a27 fb39eb073b484b6ea2a0262e327cdb48 { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01873.RNA-Seq.transcriptome.T.hg38 C3N-01873 UCEC RNA-Seq tumor CPT0117230009 414d2f5e-aba8-46ff-89db-a8399e6cb807.rna_seq.transcriptome.gdc_realn.bam 9604799535 BAM transcriptome harmonized CPTAC3 6cf3c17b-7a67-44f9-b611-8fba83f6787a 8e64ccb92734bd8fed5a9ee7affe6e9a { 'aliquot_tag': 'ALQ_750516e1', 'gdc_sample_type': 'Primary Tumor' } C3N-01873.WGS.N C3N-01873 UCEC WGS blood_normal CPT0117290002 CPT0117290002.WholeGenome.RP-1303.bam 67286218104 BAM aligned CPTAC3 26232769-3b76-487f-91ff-5501dfb82799 544e097faa6797d3ad3fe23032699d07 { 'aliquot_tag': 'ALQ_a867d7c8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01873.WGS.N.hg38 C3N-01873 UCEC WGS blood_normal CPT0117290002 61f6b660-fa1d-401a-a8ea-230aef418f5b_wgs_gdc_realn.bam 94793179025 BAM harmonized CPTAC3 9468382d-89c9-4215-8319-a9e24967233a 0da58781b78ada0ffa3469b832a3ed9c { 'aliquot_tag': 'ALQ_a867d7c8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01873.WGS.T C3N-01873 UCEC WGS tumor CPT0117230006 CPT0117230006.WholeGenome.RP-1303.bam 60859743768 BAM aligned CPTAC3 cc578a23-ea82-4365-a13f-ca77a7ed2f03 362e7349ff2f678fd3809df5ad9c64c6 { 'aliquot_tag': 'ALQ_e5ba0b70', 'gdc_sample_type': 'Primary Tumor' } @@ -27931,13 +29951,16 @@ C3N-01874.MethArray.Green.T C3N-01874 UCEC Methylation Array tumor CPT0117300006 C3N-01874.MethArray.Red.T C3N-01874 UCEC Methylation Array tumor CPT0117300006 203219640068_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 57aaedbd-7d4e-4292-ad60-2228186349db 0ff5498977a1b0bdc22954aece614580 { 'aliquot_tag': 'ALQ_6946a205', 'gdc_sample_type': 'Primary Tumor' } C3N-01874.miRNA-Seq.T C3N-01874 UCEC miRNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0176_AHYGLVBBXX_ATTCCT_S27_L005_R1_001.unaln.bam 209066989 BAM unaligned CPTAC3 a770269f-9532-47fd-9327-7f07669f3360 375b7249e783f096d204466dee238efc { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor' } C3N-01874.miRNA-Seq.T.hg38 C3N-01874 UCEC miRNA-Seq tumor CPT0117300009 83747dfe-22cf-466f-a294-69f03341d35b_mirnaseq_gdc_realn.bam 225636049 BAM harmonized CPTAC3 aa44751e-8ecc-4cfd-ad1c-a993a9755dca 5e7c1a1d822d1bfb379d1274ad050905 { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor' } -C3N-01874.RNA-Seq.chimeric.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 646b79d2-da9f-4027-9e56-7dfebd3a8bd4.rna_seq.chimeric.gdc_realn.bam 80579799 BAM chimeric harmonized CPTAC3 d5a74750-f021-4e0c-b9f5-cfca0e36f46e 32ceeb1aacacaf24005c4582cacbfd18 { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor' } -C3N-01874.RNA-Seq.genomic.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 646b79d2-da9f-4027-9e56-7dfebd3a8bd4.rna_seq.genomic.gdc_realn.bam 9289497112 BAM genomic harmonized CPTAC3 0c66e067-70e3-458c-b996-a46d1d7d4416 2ff25f353975c905f74e7802de236444 { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor' } -C3N-01874.RNA-Seq.R1_L002.T C3N-01874 UCEC RNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0177_BH32KTBBXY_TTAGGC_S8_L002_R1_001.fastq.gz 4265998735 FASTQ R1_L002 unaligned CPTAC3 d97a854b-3984-40dd-b01e-5810d95b0d69 58e1e13c7a593fb761f18f64d88da0b9 { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor' } -C3N-01874.RNA-Seq.R1_.T C3N-01874 UCEC RNA-Seq tumor CPT0352020001 20210723_P2_H11_WB7988-plate2_S95_R1_001.fastq.gz 2913411714 FASTQ R1_ unaligned CPTAC3 cb567b7a-690d-4c0b-bf09-a463ca1b0459 b5d1ad424a16c7cab7cc7f9c94b059b8 { 'aliquot_tag': 'ALQ_f3f21fb3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01874.RNA-Seq.R2_L002.T C3N-01874 UCEC RNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0177_BH32KTBBXY_TTAGGC_S8_L002_R2_001.fastq.gz 4481104167 FASTQ R2_L002 unaligned CPTAC3 3e8f5bf6-4e83-4d41-966c-627b192d3cad 1c9944c83cdef55e89cd643e6ec65729 { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor' } -C3N-01874.RNA-Seq.R2_.T C3N-01874 UCEC RNA-Seq tumor CPT0352020001 20210723_P2_H11_WB7988-plate2_S95_R2_001.fastq.gz 2999780568 FASTQ R2_ unaligned CPTAC3 501a7f08-f065-4649-88d3-8bf8325ef5cb f35d4119cce2e6b197bfd4800804b309 { 'aliquot_tag': 'ALQ_f3f21fb3', 'gdc_sample_type': 'Primary Tumor' } -C3N-01874.RNA-Seq.transcriptome.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 646b79d2-da9f-4027-9e56-7dfebd3a8bd4.rna_seq.transcriptome.gdc_realn.bam 8314580567 BAM transcriptome harmonized CPTAC3 156dd8fd-8f2f-46b9-bb5d-d05e16ec0f63 5a40c8fa2ee0a5e6f884a5c9e78ead7d { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor' } +C3N-01874.RNA-Seq.chimeric.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 e2b1f558-1a1a-4f55-bc05-80e699b540ea.rna_seq.chimeric.gdc_realn.bam 80580748 BAM chimeric harmonized CPTAC3 de9429c4-5320-49bb-a507-da14a39d07d5 793322cb24cebc2b56507cfeca15bb83 { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor' } +C3N-01874.RNA-Seq.chimeric.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0352020001 c3aaa882-b58e-4e0b-9706-884219df2cc2.rna_seq.chimeric.gdc_realn.bam 90342724 BAM chimeric harmonized CPTAC3 c2167960-43d5-4d2a-9b66-a3f8d5efceee eb813b2cc36bd548fe438b95128f7167 { 'aliquot_tag': 'ALQ_f3f21fb3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01874.RNA-Seq.genomic.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 e2b1f558-1a1a-4f55-bc05-80e699b540ea.rna_seq.genomic.gdc_realn.bam 9290898116 BAM genomic harmonized CPTAC3 8f4e8f09-3a1a-4f8f-b44b-0e22c6982d63 0d5cefb92be6f6c643123bd8f9d0edb0 { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor' } +C3N-01874.RNA-Seq.genomic.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0352020001 c3aaa882-b58e-4e0b-9706-884219df2cc2.rna_seq.genomic.gdc_realn.bam 5421209492 BAM genomic harmonized CPTAC3 6f32e48b-d84c-40fc-8d54-705ad3c0ca18 294cd6826138713a5f11643d1a5845d5 { 'aliquot_tag': 'ALQ_f3f21fb3', 'gdc_sample_type': 'Primary Tumor' } +C3N-01874.RNA-Seq.R1_L002.T C3N-01874 UCEC RNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0177_BH32KTBBXY_TTAGGC_S8_L002_R1_001.fastq.gz 4265998735 FASTQ R1_L002 unaligned CPTAC3 d97a854b-3984-40dd-b01e-5810d95b0d69 58e1e13c7a593fb761f18f64d88da0b9 { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01874.RNA-Seq.R2_L002.T C3N-01874 UCEC RNA-Seq tumor CPT0117300009 190108_UNC31-K00269_0177_BH32KTBBXY_TTAGGC_S8_L002_R2_001.fastq.gz 4481104167 FASTQ R2_L002 unaligned CPTAC3 3e8f5bf6-4e83-4d41-966c-627b192d3cad 1c9944c83cdef55e89cd643e6ec65729 { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01874.RNA-Seq.T C3N-01874 UCEC RNA-Seq tumor CPT0352020001 20210723_P2_H11_WB7988-plate2_S95_R1_001.fastq.gz 2913411714 FASTQ unaligned CPTAC3 cb567b7a-690d-4c0b-bf09-a463ca1b0459 b5d1ad424a16c7cab7cc7f9c94b059b8 +C3N-01874.RNA-Seq.T C3N-01874 UCEC RNA-Seq tumor CPT0352020001 20210723_P2_H11_WB7988-plate2_S95_R2_001.fastq.gz 2999780568 FASTQ unaligned CPTAC3 501a7f08-f065-4649-88d3-8bf8325ef5cb f35d4119cce2e6b197bfd4800804b309 +C3N-01874.RNA-Seq.transcriptome.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0117300009 e2b1f558-1a1a-4f55-bc05-80e699b540ea.rna_seq.transcriptome.gdc_realn.bam 9529150511 BAM transcriptome harmonized CPTAC3 f3188d5b-c6c7-4bc7-81ca-b0e4c1c18787 1a8f2c99bab0385614a41d5845af8a47 { 'aliquot_tag': 'ALQ_f9f9bf94', 'gdc_sample_type': 'Primary Tumor' } +C3N-01874.RNA-Seq.transcriptome.T.hg38 C3N-01874 UCEC RNA-Seq tumor CPT0352020001 c3aaa882-b58e-4e0b-9706-884219df2cc2.rna_seq.transcriptome.gdc_realn.bam 2528218415 BAM transcriptome harmonized CPTAC3 71157d6e-c181-4ea2-916c-010416f42e71 a8249e3fc4de88bf3c474332bffb2918 { 'aliquot_tag': 'ALQ_f3f21fb3', 'gdc_sample_type': 'Primary Tumor' } C3N-01874.WGS.N C3N-01874 UCEC WGS blood_normal CPT0117360002 CPT0117360002.WholeGenome.RP-1303.bam 64878429530 BAM aligned CPTAC3 57893ab6-fb82-4b70-b2bd-eb0225caee32 d74575a7d2b016365e9523923e1454a5 { 'aliquot_tag': 'ALQ_e16b93bc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01874.WGS.N.hg38 C3N-01874 UCEC WGS blood_normal CPT0117360002 4b3d1903-bd55-4ecc-8c23-78b99d158758_wgs_gdc_realn.bam 93270235466 BAM harmonized CPTAC3 85bdde21-c545-4344-82cf-6d03f5dadcb8 57d5ae01960faa3bc867cf4ab629bf48 { 'aliquot_tag': 'ALQ_e16b93bc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01874.WGS.T C3N-01874 UCEC WGS tumor CPT0117300006 CPT0117300006.WholeGenome.RP-1303.bam 61255942774 BAM aligned CPTAC3 b15bc90f-0fbe-4924-9796-327420b3ae04 5bf72c43db6e459b9d40d8717614e69d { 'aliquot_tag': 'ALQ_6946a205', 'gdc_sample_type': 'Primary Tumor' } @@ -27952,18 +29975,21 @@ C3N-01875.miRNA-Seq.A C3N-01875 UCEC miRNA-Seq tissue_normal CPT0117390006 19013 C3N-01875.miRNA-Seq.A.hg38 C3N-01875 UCEC miRNA-Seq tissue_normal CPT0117390006 09991dad-569c-4519-a6a1-505aa2d6134e_mirnaseq_gdc_realn.bam 254189884 BAM harmonized CPTAC3 fec05ddf-ce00-4467-b37b-78fe08c92dfb b1a6e370245e9c27c56457943ca7ed34 { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01875.miRNA-Seq.T C3N-01875 UCEC miRNA-Seq tumor CPT0117370010 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L005_R1_001.unaln.bam 213047372 BAM unaligned CPTAC3 5294be67-eac0-4654-9014-8c4ca569f04b 939432a2557e4afef9c7a8f51d9b5248 { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor' } C3N-01875.miRNA-Seq.T.hg38 C3N-01875 UCEC miRNA-Seq tumor CPT0117370010 524b08b0-dc8f-4361-a7ef-841a8806ea34_mirnaseq_gdc_realn.bam 237774592 BAM harmonized CPTAC3 aa403b46-5225-4821-a913-44cd6cd48dd9 09fc9cf5445ea838a60136a7ae32e842 { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor' } -C3N-01875.RNA-Seq.chimeric.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 c8c1960e-599f-4a83-bcf2-c3cbafa00a38.rna_seq.chimeric.gdc_realn.bam 46998418 BAM chimeric harmonized CPTAC3 b38b87f5-fc1f-4694-a4bf-e1d48f9e013c 5210b59828404b075253c98f15992e8c { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01875.RNA-Seq.chimeric.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 53da6d0d-a533-4ce0-aef7-b96e70200bbe.rna_seq.chimeric.gdc_realn.bam 61436981 BAM chimeric harmonized CPTAC3 678d5a55-a856-483c-83d8-cbcbf6384623 c03d6b7ec9e7dc495ada766a37142660 { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor' } -C3N-01875.RNA-Seq.genomic.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 c8c1960e-599f-4a83-bcf2-c3cbafa00a38.rna_seq.genomic.gdc_realn.bam 9107040701 BAM genomic harmonized CPTAC3 8b6976c8-cf08-4b61-b8c0-886e8d650517 d8a3fc832be56bc60eb8f1713facc9f4 { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01875.RNA-Seq.genomic.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 53da6d0d-a533-4ce0-aef7-b96e70200bbe.rna_seq.genomic.gdc_realn.bam 8182822538 BAM genomic harmonized CPTAC3 3f6cfab5-2d7f-4488-9a48-977faa41395b 5008bc72072f0146447fcab33b9e282f { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor' } -C3N-01875.RNA-Seq.R1_L001.A C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L001_R1_001.fastq.gz 3932753521 FASTQ R1_L001 unaligned CPTAC3 2d4e5d3b-3348-4e13-bf3c-8c724df75ee4 54812e848805ee020eb19439d046d48a { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01875.RNA-Seq.R1_L002.T C3N-01875 UCEC RNA-Seq tumor CPT0117370010 190108_UNC31-K00269_0177_BH32KTBBXY_TGACCA_S7_L002_R1_001.fastq.gz 3948746418 FASTQ R1_L002 unaligned CPTAC3 572fe453-742d-4535-8b2c-2f320cf01853 e7df1ef76ff54d0bef3ceee19ec70c45 { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor' } -C3N-01875.RNA-Seq.R1_.T C3N-01875 UCEC RNA-Seq tumor CPT0352060001 20210729_P3_E9_WB7988-Plate3_S57_R1_001.fastq.gz 8276135256 FASTQ R1_ unaligned CPTAC3 9efa5228-7f68-4e0a-8dea-08f05ff3b94c 69f5a530c46418d63c6e8198af532e9c { 'aliquot_tag': 'ALQ_672b973', 'gdc_sample_type': 'Primary Tumor' } -C3N-01875.RNA-Seq.R2_L001.A C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L001_R2_001.fastq.gz 4328448634 FASTQ R2_L001 unaligned CPTAC3 dbdf9de9-3c31-47a1-bfc9-3cf812b0d767 f11a931636f2b2d83bab90e1f78c84b6 { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01875.RNA-Seq.R2_L002.T C3N-01875 UCEC RNA-Seq tumor CPT0117370010 190108_UNC31-K00269_0177_BH32KTBBXY_TGACCA_S7_L002_R2_001.fastq.gz 4029884985 FASTQ R2_L002 unaligned CPTAC3 199d1d37-fa4e-4a5b-8cde-332a5846109a dded4c9b5ccb39d71083990455612cd5 { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor' } -C3N-01875.RNA-Seq.R2_.T C3N-01875 UCEC RNA-Seq tumor CPT0352060001 20210729_P3_E9_WB7988-Plate3_S57_R2_001.fastq.gz 8592493759 FASTQ R2_ unaligned CPTAC3 b3bec528-e765-4e31-8e59-72243be01608 2eda9d94fd3f039a9595e778f1c4d131 { 'aliquot_tag': 'ALQ_672b973', 'gdc_sample_type': 'Primary Tumor' } -C3N-01875.RNA-Seq.transcriptome.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 c8c1960e-599f-4a83-bcf2-c3cbafa00a38.rna_seq.transcriptome.gdc_realn.bam 9577634873 BAM transcriptome harmonized CPTAC3 03564e54-5060-4cfa-a9a9-6aa62dd40a1f d0fb297fce64dd497fb41756be843d97 { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01875.RNA-Seq.transcriptome.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 53da6d0d-a533-4ce0-aef7-b96e70200bbe.rna_seq.transcriptome.gdc_realn.bam 8732695129 BAM transcriptome harmonized CPTAC3 e2d3e986-8ff7-44ad-a58a-4b4e16fe5ab1 4593139f8ed9fbc00bf8287522ceb8fc { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor' } +C3N-01875.RNA-Seq.chimeric.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 ad316029-a2f7-4eee-a90b-1707600931f0.rna_seq.chimeric.gdc_realn.bam 46969022 BAM chimeric harmonized CPTAC3 f256ea4e-9b21-4ea1-b752-2a2bb63e3b66 521e7adcbd53e23c1e37f46f2d9337a6 { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01875.RNA-Seq.chimeric.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 d49e5d8e-61cf-4d7f-91e1-0958864b5c08.rna_seq.chimeric.gdc_realn.bam 61424775 BAM chimeric harmonized CPTAC3 68b789ae-2207-45ba-9fb4-d017425acafa 5c43e906420e3f128ae429868422e72a { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor' } +C3N-01875.RNA-Seq.chimeric.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0352060001 39e56a10-8cd5-43d7-b16b-badd497bfe46.rna_seq.chimeric.gdc_realn.bam 300173612 BAM chimeric harmonized CPTAC3 4a2a0075-7d9a-41f8-b53f-094e3018399c f5858d28637ad5f044b90b26c395890e { 'aliquot_tag': 'ALQ_672b973', 'gdc_sample_type': 'Primary Tumor' } +C3N-01875.RNA-Seq.genomic.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 ad316029-a2f7-4eee-a90b-1707600931f0.rna_seq.genomic.gdc_realn.bam 9108565109 BAM genomic harmonized CPTAC3 1bcc8bfd-5841-48cf-8cc7-7f3c4e9161bd 87af12801334a5c45d728441348f8f3a { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01875.RNA-Seq.genomic.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 d49e5d8e-61cf-4d7f-91e1-0958864b5c08.rna_seq.genomic.gdc_realn.bam 8184371762 BAM genomic harmonized CPTAC3 bcf6f2a4-0e6d-4730-a086-abae68de3035 f5c50debcfb67df7a19392ce06394a98 { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor' } +C3N-01875.RNA-Seq.genomic.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0352060001 39e56a10-8cd5-43d7-b16b-badd497bfe46.rna_seq.genomic.gdc_realn.bam 12155013221 BAM genomic harmonized CPTAC3 90ea6ff9-ac98-4508-8fe2-67729ea87d93 ef3147dc0343d4e18f58bba68ca2fe52 { 'aliquot_tag': 'ALQ_672b973', 'gdc_sample_type': 'Primary Tumor' } +C3N-01875.RNA-Seq.R1_L001.A C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L001_R1_001.fastq.gz 3932753521 FASTQ R1_L001 unaligned CPTAC3 2d4e5d3b-3348-4e13-bf3c-8c724df75ee4 54812e848805ee020eb19439d046d48a { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01875.RNA-Seq.R1_L002.T C3N-01875 UCEC RNA-Seq tumor CPT0117370010 190108_UNC31-K00269_0177_BH32KTBBXY_TGACCA_S7_L002_R1_001.fastq.gz 3948746418 FASTQ R1_L002 unaligned CPTAC3 572fe453-742d-4535-8b2c-2f320cf01853 e7df1ef76ff54d0bef3ceee19ec70c45 { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01875.RNA-Seq.R2_L001.A C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 190201_UNC31-K00269_0190_BH3LFKBBXY_ACTGAT_S1_L001_R2_001.fastq.gz 4328448634 FASTQ R2_L001 unaligned CPTAC3 dbdf9de9-3c31-47a1-bfc9-3cf812b0d767 f11a931636f2b2d83bab90e1f78c84b6 { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01875.RNA-Seq.R2_L002.T C3N-01875 UCEC RNA-Seq tumor CPT0117370010 190108_UNC31-K00269_0177_BH32KTBBXY_TGACCA_S7_L002_R2_001.fastq.gz 4029884985 FASTQ R2_L002 unaligned CPTAC3 199d1d37-fa4e-4a5b-8cde-332a5846109a dded4c9b5ccb39d71083990455612cd5 { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01875.RNA-Seq.T C3N-01875 UCEC RNA-Seq tumor CPT0352060001 20210729_P3_E9_WB7988-Plate3_S57_R1_001.fastq.gz 8276135256 FASTQ unaligned CPTAC3 9efa5228-7f68-4e0a-8dea-08f05ff3b94c 69f5a530c46418d63c6e8198af532e9c +C3N-01875.RNA-Seq.T C3N-01875 UCEC RNA-Seq tumor CPT0352060001 20210729_P3_E9_WB7988-Plate3_S57_R2_001.fastq.gz 8592493759 FASTQ unaligned CPTAC3 b3bec528-e765-4e31-8e59-72243be01608 2eda9d94fd3f039a9595e778f1c4d131 +C3N-01875.RNA-Seq.transcriptome.A.hg38 C3N-01875 UCEC RNA-Seq tissue_normal CPT0117390006 ad316029-a2f7-4eee-a90b-1707600931f0.rna_seq.transcriptome.gdc_realn.bam 10975510004 BAM transcriptome harmonized CPTAC3 03d58888-13d7-4b30-aeaa-b986030f238d c15c853a756f1f4258e78dc5a33e56f7 { 'aliquot_tag': 'ALQ_6456c074', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01875.RNA-Seq.transcriptome.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0117370010 d49e5d8e-61cf-4d7f-91e1-0958864b5c08.rna_seq.transcriptome.gdc_realn.bam 9987917604 BAM transcriptome harmonized CPTAC3 7c6da2ed-e9a4-4f3e-a909-d971090f89ae aa678ff8463baeec1097a2a9916d1b3e { 'aliquot_tag': 'ALQ_2b1eea61', 'gdc_sample_type': 'Primary Tumor' } +C3N-01875.RNA-Seq.transcriptome.T.hg38 C3N-01875 UCEC RNA-Seq tumor CPT0352060001 39e56a10-8cd5-43d7-b16b-badd497bfe46.rna_seq.transcriptome.gdc_realn.bam 7731666744 BAM transcriptome harmonized CPTAC3 3a05c6bb-b3a5-4d9f-89a2-dd3f73a2f146 911fc6f2e0c86f3dce1dc1fed1e8cb31 { 'aliquot_tag': 'ALQ_672b973', 'gdc_sample_type': 'Primary Tumor' } C3N-01875.WGS.N C3N-01875 UCEC WGS blood_normal CPT0117430002 CPT0117430002.WholeGenome.RP-1303.bam 60481735695 BAM aligned CPTAC3 4e3ff215-4b85-4d4e-a78c-b79024191c94 4710288a4685eab36c9916af884a6f38 { 'aliquot_tag': 'ALQ_348e2c74', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01875.WGS.N.hg38 C3N-01875 UCEC WGS blood_normal CPT0117430002 888e64a7-b440-45a5-8e81-1587f98e4053_wgs_gdc_realn.bam 87491529073 BAM harmonized CPTAC3 b96f7166-53a7-4c72-8be9-309fbbeaadf9 f4d4e41a30af033f1ddd74f884cb65ba { 'aliquot_tag': 'ALQ_348e2c74', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01875.WGS.T C3N-01875 UCEC WGS tumor CPT0117370007 CPT0117370007.WholeGenome.RP-1303.bam 62104710329 BAM aligned CPTAC3 cab1ac54-aafd-4098-94fc-fbc2ae3a9757 a401a6078be2f81574ecafbfd8a77bae { 'aliquot_tag': 'ALQ_ac614e83', 'gdc_sample_type': 'Primary Tumor' } @@ -27978,18 +30004,21 @@ C3N-01876.miRNA-Seq.A C3N-01876 UCEC miRNA-Seq tissue_normal CPT0117460009 19013 C3N-01876.miRNA-Seq.A.hg38 C3N-01876 UCEC miRNA-Seq tissue_normal CPT0117460009 f58ecc0b-6321-41e1-ad1b-2cae4a16e5e9_mirnaseq_gdc_realn.bam 273521118 BAM harmonized CPTAC3 f96536fd-40de-43b2-b170-7e4e71bc3c12 f3e55749c67bfb3fd68114e118674fad { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01876.miRNA-Seq.T C3N-01876 UCEC miRNA-Seq tumor CPT0117440009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L005_R1_001.unaln.bam 227248056 BAM unaligned CPTAC3 27b2cae5-ee05-498b-a4f9-0d934433244b 900eb20519808e2e778afcbe8b0f0330 { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor' } C3N-01876.miRNA-Seq.T.hg38 C3N-01876 UCEC miRNA-Seq tumor CPT0117440009 9587e91c-fe4b-4b5f-88fe-0f1af6a44bbd_mirnaseq_gdc_realn.bam 259053010 BAM harmonized CPTAC3 64ac8905-f9cd-4cc4-ad3b-d9ae4312c593 5ca72f51998f0a74804894077bb2e175 { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor' } -C3N-01876.RNA-Seq.chimeric.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 25921a31-f551-4132-a5ee-6e6d7c678eb4.rna_seq.chimeric.gdc_realn.bam 54350902 BAM chimeric harmonized CPTAC3 601e13a9-4e1b-453e-95d1-e1a6a20047c9 e966a71ec09cad2a6a3d9b3f49fa0e9a { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01876.RNA-Seq.chimeric.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 dbc2fb64-2827-4960-9857-00495feeeff3.rna_seq.chimeric.gdc_realn.bam 38223482 BAM chimeric harmonized CPTAC3 55c84167-cbb2-45ae-b830-6b7e6f7e22c5 7cd1d4e36c139990d1d740b4d33b338c { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor' } -C3N-01876.RNA-Seq.genomic.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 25921a31-f551-4132-a5ee-6e6d7c678eb4.rna_seq.genomic.gdc_realn.bam 9940117729 BAM genomic harmonized CPTAC3 72aebc13-5096-4655-9281-20276046cbdd c91e0d85b06d4953145d120eb203ec5f { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01876.RNA-Seq.genomic.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 dbc2fb64-2827-4960-9857-00495feeeff3.rna_seq.genomic.gdc_realn.bam 8219538762 BAM genomic harmonized CPTAC3 69bffde8-5bd8-473f-a5f5-cf0c75b113a4 0fa5036cf164bdff3ed9da39502b4904 { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor' } -C3N-01876.RNA-Seq.R1_L001.A C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4277362519 FASTQ R1_L001 unaligned CPTAC3 e56a086a-9189-4798-9d29-b3972cb193f9 3e4dfb78ec6b64723c57916a73aa5a1c { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01876.RNA-Seq.R1_L003.T C3N-01876 UCEC RNA-Seq tumor CPT0117440009 190108_UNC31-K00269_0177_BH32KTBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3939341820 FASTQ R1_L003 unaligned CPTAC3 7b9c1e27-ab2d-4916-b7cd-e65bf866383e db3f70f1ef648f4a7c523ddc55dcd62a { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor' } -C3N-01876.RNA-Seq.R1_.T C3N-01876 UCEC RNA-Seq tumor CPT0352080001 20210729_P3_A2_WB7988-Plate3_S2_R1_001.fastq.gz 6637923585 FASTQ R1_ unaligned CPTAC3 1ce66ac7-2cdd-4aee-befe-e262128803b1 4b36c54f220fe1876db92c9b61fe1197 { 'aliquot_tag': 'ALQ_b9420712', 'gdc_sample_type': 'Primary Tumor' } -C3N-01876.RNA-Seq.R2_L001.A C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4757675547 FASTQ R2_L001 unaligned CPTAC3 725a91e3-b8fd-4b89-b7b8-15091323cc5e 4ddaf4ebf9da700863c4daf816607419 { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01876.RNA-Seq.R2_L003.T C3N-01876 UCEC RNA-Seq tumor CPT0117440009 190108_UNC31-K00269_0177_BH32KTBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 4122695682 FASTQ R2_L003 unaligned CPTAC3 9da87d3c-7add-44bd-a77d-73bffab555b0 f111a49a153d51ea2d0a65c0f2d3ddf2 { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor' } -C3N-01876.RNA-Seq.R2_.T C3N-01876 UCEC RNA-Seq tumor CPT0352080001 20210729_P3_A2_WB7988-Plate3_S2_R2_001.fastq.gz 6846423470 FASTQ R2_ unaligned CPTAC3 716fd6c8-9549-4f0d-a110-414d775cfe3d f0e4845fa7021d1f3d57e0be06f1fa8a { 'aliquot_tag': 'ALQ_b9420712', 'gdc_sample_type': 'Primary Tumor' } -C3N-01876.RNA-Seq.transcriptome.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 25921a31-f551-4132-a5ee-6e6d7c678eb4.rna_seq.transcriptome.gdc_realn.bam 10418924031 BAM transcriptome harmonized CPTAC3 41d78881-ec42-4a32-bdda-da6ec77fd9f6 b4f5f450b2f05b57ebc57f7ace4b9575 { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01876.RNA-Seq.transcriptome.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 dbc2fb64-2827-4960-9857-00495feeeff3.rna_seq.transcriptome.gdc_realn.bam 9870212979 BAM transcriptome harmonized CPTAC3 32f01c6a-c47d-4523-be9c-1e120c36b13c f8e4f9442a309ed55615b9a72e695adc { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor' } +C3N-01876.RNA-Seq.chimeric.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 0e52f122-2420-4f54-ab18-770154bace31.rna_seq.chimeric.gdc_realn.bam 54328805 BAM chimeric harmonized CPTAC3 edccdade-c525-4783-9b2d-bbece71ad7e0 360ee4fac35298973db47865d0ec6a9f { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01876.RNA-Seq.chimeric.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 2afb862a-0598-4cb4-baee-8a20e122a95f.rna_seq.chimeric.gdc_realn.bam 38211556 BAM chimeric harmonized CPTAC3 e49a721f-c601-4e86-bb57-3f3adba596c1 18309bba3bce3fa89879ac17037f0614 { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor' } +C3N-01876.RNA-Seq.chimeric.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0352080001 e8bbba31-737a-4dd5-bb39-1874085ec214.rna_seq.chimeric.gdc_realn.bam 256223473 BAM chimeric harmonized CPTAC3 364d03dc-de1c-482b-97a7-573177866538 f9df5a199ab225ac30ff602664b414ac { 'aliquot_tag': 'ALQ_b9420712', 'gdc_sample_type': 'Primary Tumor' } +C3N-01876.RNA-Seq.genomic.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 0e52f122-2420-4f54-ab18-770154bace31.rna_seq.genomic.gdc_realn.bam 9941484364 BAM genomic harmonized CPTAC3 9040f36b-2352-43ec-b8f6-22f34bbde5d5 1a30b4aa06978e9a2664abe5660225df { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01876.RNA-Seq.genomic.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 2afb862a-0598-4cb4-baee-8a20e122a95f.rna_seq.genomic.gdc_realn.bam 8220673375 BAM genomic harmonized CPTAC3 5234a6ae-cdfb-43a9-a512-ac6ea6083784 eb9cf0bf2470040e43227a0dcc5f5836 { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor' } +C3N-01876.RNA-Seq.genomic.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0352080001 e8bbba31-737a-4dd5-bb39-1874085ec214.rna_seq.genomic.gdc_realn.bam 10650743750 BAM genomic harmonized CPTAC3 0a888fb1-3d13-4286-aea7-a34077785623 b2da410456797f6f1bf5ec3f05a2960c { 'aliquot_tag': 'ALQ_b9420712', 'gdc_sample_type': 'Primary Tumor' } +C3N-01876.RNA-Seq.R1_L001.A C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4277362519 FASTQ R1_L001 unaligned CPTAC3 e56a086a-9189-4798-9d29-b3972cb193f9 3e4dfb78ec6b64723c57916a73aa5a1c { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01876.RNA-Seq.R1_L003.T C3N-01876 UCEC RNA-Seq tumor CPT0117440009 190108_UNC31-K00269_0177_BH32KTBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3939341820 FASTQ R1_L003 unaligned CPTAC3 7b9c1e27-ab2d-4916-b7cd-e65bf866383e db3f70f1ef648f4a7c523ddc55dcd62a { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01876.RNA-Seq.R2_L001.A C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4757675547 FASTQ R2_L001 unaligned CPTAC3 725a91e3-b8fd-4b89-b7b8-15091323cc5e 4ddaf4ebf9da700863c4daf816607419 { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01876.RNA-Seq.R2_L003.T C3N-01876 UCEC RNA-Seq tumor CPT0117440009 190108_UNC31-K00269_0177_BH32KTBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 4122695682 FASTQ R2_L003 unaligned CPTAC3 9da87d3c-7add-44bd-a77d-73bffab555b0 f111a49a153d51ea2d0a65c0f2d3ddf2 { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01876.RNA-Seq.T C3N-01876 UCEC RNA-Seq tumor CPT0352080001 20210729_P3_A2_WB7988-Plate3_S2_R1_001.fastq.gz 6637923585 FASTQ unaligned CPTAC3 1ce66ac7-2cdd-4aee-befe-e262128803b1 4b36c54f220fe1876db92c9b61fe1197 +C3N-01876.RNA-Seq.T C3N-01876 UCEC RNA-Seq tumor CPT0352080001 20210729_P3_A2_WB7988-Plate3_S2_R2_001.fastq.gz 6846423470 FASTQ unaligned CPTAC3 716fd6c8-9549-4f0d-a110-414d775cfe3d f0e4845fa7021d1f3d57e0be06f1fa8a +C3N-01876.RNA-Seq.transcriptome.A.hg38 C3N-01876 UCEC RNA-Seq tissue_normal CPT0117460009 0e52f122-2420-4f54-ab18-770154bace31.rna_seq.transcriptome.gdc_realn.bam 11837074536 BAM transcriptome harmonized CPTAC3 93d32fc5-a06f-43f5-a673-3601dbe52213 bbd577eac06c74bc2bae1c777e199703 { 'aliquot_tag': 'ALQ_6bbc7a8c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01876.RNA-Seq.transcriptome.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0117440009 2afb862a-0598-4cb4-baee-8a20e122a95f.rna_seq.transcriptome.gdc_realn.bam 11287050450 BAM transcriptome harmonized CPTAC3 f392a4ce-c23b-44bf-9bf1-ca7d56df6202 e4720259110cca9099c6c182014ce985 { 'aliquot_tag': 'ALQ_117c29ec', 'gdc_sample_type': 'Primary Tumor' } +C3N-01876.RNA-Seq.transcriptome.T.hg38 C3N-01876 UCEC RNA-Seq tumor CPT0352080001 e8bbba31-737a-4dd5-bb39-1874085ec214.rna_seq.transcriptome.gdc_realn.bam 5165281066 BAM transcriptome harmonized CPTAC3 f6ff6f6f-45db-43fe-814c-5d1a643d522a c1b0ba50134bf87f551f048b0d16597c { 'aliquot_tag': 'ALQ_b9420712', 'gdc_sample_type': 'Primary Tumor' } C3N-01876.WGS.A C3N-01876 UCEC WGS tissue_normal CPT0117460006 CPT0117460006.WholeGenome.RP-1303.bam 62897242073 BAM aligned CPTAC3 3f605f64-302a-40ad-a336-498e82501ca6 1457f978a63e8e6d815a5f9932ae23ff { 'aliquot_tag': 'ALQ_fb03671d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01876.WGS.A.hg38 C3N-01876 UCEC WGS tissue_normal CPT0117460006 436d887f-93f8-48b7-9076-4575d4400f78_wgs_gdc_realn.bam 92915318396 BAM harmonized CPTAC3 50f6619f-28af-4469-90a7-b955893ee01e 4838111137b751d23015103cdd48e753 { 'aliquot_tag': 'ALQ_fb03671d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01876.WGS.N C3N-01876 UCEC WGS blood_normal CPT0117500002 CPT0117500002.WholeGenome.RP-1303.bam 63181255926 BAM aligned CPTAC3 b066ca2f-eb5e-4aa8-a4f1-70c94e100c06 74db40e5d4f63fe6d8001769bf9fdc81 { 'aliquot_tag': 'ALQ_b8728501', 'gdc_sample_type': 'Blood Derived Normal' } @@ -28006,13 +30035,16 @@ C3N-01877.MethArray.Green.T C3N-01877 UCEC Methylation Array tumor CPT0117510006 C3N-01877.MethArray.Red.T C3N-01877 UCEC Methylation Array tumor CPT0117510006 203219720203_R02C01_Red.idat 13676219 IDAT Red NA CPTAC3 313b17eb-1ab2-40e1-8d19-fbf2111ed360 ec4e4c7a3256ae932bcf809f43b0f92d { 'aliquot_tag': 'ALQ_827f68a8', 'gdc_sample_type': 'Primary Tumor' } C3N-01877.miRNA-Seq.T C3N-01877 UCEC miRNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0176_AHYGLVBBXX_CACCGG_S30_L005_R1_001.unaln.bam 215872030 BAM unaligned CPTAC3 935ffb3d-90af-4224-b02a-c4faddb9e6ce a44ac35c22077e3c272f05df4bb9d0e7 { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor' } C3N-01877.miRNA-Seq.T.hg38 C3N-01877 UCEC miRNA-Seq tumor CPT0117510009 74b3f75b-f213-43af-aed8-5879e75f97d7_mirnaseq_gdc_realn.bam 236898211 BAM harmonized CPTAC3 ec185926-9180-4a04-ae30-35606b06fb8e 2127316882ca3fd0bcd0bc1d1700b337 { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor' } -C3N-01877.RNA-Seq.chimeric.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 c332bc72-a1ca-4df9-aff6-4033e6ae13c3.rna_seq.chimeric.gdc_realn.bam 39356617 BAM chimeric harmonized CPTAC3 831ec38b-3e59-40db-a8c1-886aaa7c8f2f 1429282692b8868a631b01b06673c83f { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor' } -C3N-01877.RNA-Seq.genomic.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 c332bc72-a1ca-4df9-aff6-4033e6ae13c3.rna_seq.genomic.gdc_realn.bam 9058676294 BAM genomic harmonized CPTAC3 43b524e0-ea76-48f2-b8e8-95f7b4192f85 cc0cacbd846a8153c984bfd7e1bccaf1 { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor' } -C3N-01877.RNA-Seq.R1_L003.T C3N-01877 UCEC RNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0177_BH32KTBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4141895071 FASTQ R1_L003 unaligned CPTAC3 a6a46db0-9e5e-4ad3-beaa-84d438688671 03007bc049981b494da964c1511ab6ee { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor' } -C3N-01877.RNA-Seq.R1_.T C3N-01877 UCEC RNA-Seq tumor CPT0352110001 20210729_P3_F6_WB7988-Plate3_S66_R1_001.fastq.gz 13729024495 FASTQ R1_ unaligned CPTAC3 de1fe3bb-8cec-4d24-a7f2-691958e09c1c 45e283144440bcbb1231de6c5d36c561 { 'aliquot_tag': 'ALQ_7f0eb6c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01877.RNA-Seq.R2_L003.T C3N-01877 UCEC RNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0177_BH32KTBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4392376489 FASTQ R2_L003 unaligned CPTAC3 a6e9b1bc-3a45-4ca0-a3f2-c88d78fd2561 1db6ef42873bedbc417b05ff2c772559 { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor' } -C3N-01877.RNA-Seq.R2_.T C3N-01877 UCEC RNA-Seq tumor CPT0352110001 20210729_P3_F6_WB7988-Plate3_S66_R2_001.fastq.gz 14278651526 FASTQ R2_ unaligned CPTAC3 e1ba06b4-42e6-4a08-a0d3-007e9613ffe5 8ea5c229a9cb1633c8ec02c9194d73ff { 'aliquot_tag': 'ALQ_7f0eb6c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01877.RNA-Seq.transcriptome.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 c332bc72-a1ca-4df9-aff6-4033e6ae13c3.rna_seq.transcriptome.gdc_realn.bam 8881411798 BAM transcriptome harmonized CPTAC3 cd67fdfb-0316-4c83-abb3-af10f43ad1fb f313743dcaf8fc9bf48f55c226e07c51 { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor' } +C3N-01877.RNA-Seq.chimeric.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 818f512d-165f-4b07-b303-dee6ce9adf3c.rna_seq.chimeric.gdc_realn.bam 39346966 BAM chimeric harmonized CPTAC3 f7a7cc84-ea1a-4a18-bbe9-7a8751a0ee63 7e7efb733d7e4108f52c3729b070117a { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor' } +C3N-01877.RNA-Seq.chimeric.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0352110001 5c8730c9-3360-4757-9cb1-c93a5c003c57.rna_seq.chimeric.gdc_realn.bam 407652741 BAM chimeric harmonized CPTAC3 c72b1118-ba29-4e07-9a1b-17c008e5f508 0c048db5531ca2dc1e232b8453ce4074 { 'aliquot_tag': 'ALQ_7f0eb6c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-01877.RNA-Seq.genomic.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 818f512d-165f-4b07-b303-dee6ce9adf3c.rna_seq.genomic.gdc_realn.bam 9060736368 BAM genomic harmonized CPTAC3 be67cf7b-f9a8-4069-999e-ae1feb361d22 bd62c671e65b41a766adcb177dc8d7e6 { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor' } +C3N-01877.RNA-Seq.genomic.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0352110001 5c8730c9-3360-4757-9cb1-c93a5c003c57.rna_seq.genomic.gdc_realn.bam 18881674449 BAM genomic harmonized CPTAC3 d0f622a6-1d04-4bd5-8664-17cb9559cacf ec20d4d097b26ab8fdcf644a0b4b761a { 'aliquot_tag': 'ALQ_7f0eb6c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-01877.RNA-Seq.R1_L003.T C3N-01877 UCEC RNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0177_BH32KTBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4141895071 FASTQ R1_L003 unaligned CPTAC3 a6a46db0-9e5e-4ad3-beaa-84d438688671 03007bc049981b494da964c1511ab6ee { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01877.RNA-Seq.R2_L003.T C3N-01877 UCEC RNA-Seq tumor CPT0117510009 190108_UNC31-K00269_0177_BH32KTBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4392376489 FASTQ R2_L003 unaligned CPTAC3 a6e9b1bc-3a45-4ca0-a3f2-c88d78fd2561 1db6ef42873bedbc417b05ff2c772559 { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01877.RNA-Seq.T C3N-01877 UCEC RNA-Seq tumor CPT0352110001 20210729_P3_F6_WB7988-Plate3_S66_R1_001.fastq.gz 13729024495 FASTQ unaligned CPTAC3 de1fe3bb-8cec-4d24-a7f2-691958e09c1c 45e283144440bcbb1231de6c5d36c561 +C3N-01877.RNA-Seq.T C3N-01877 UCEC RNA-Seq tumor CPT0352110001 20210729_P3_F6_WB7988-Plate3_S66_R2_001.fastq.gz 14278651526 FASTQ unaligned CPTAC3 e1ba06b4-42e6-4a08-a0d3-007e9613ffe5 8ea5c229a9cb1633c8ec02c9194d73ff +C3N-01877.RNA-Seq.transcriptome.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0117510009 818f512d-165f-4b07-b303-dee6ce9adf3c.rna_seq.transcriptome.gdc_realn.bam 10117235419 BAM transcriptome harmonized CPTAC3 d8f1d527-8c10-46e2-9cf5-8c19dbe4b7c0 eccd9f596e3a9e57ace5b422f302eeae { 'aliquot_tag': 'ALQ_12c07539', 'gdc_sample_type': 'Primary Tumor' } +C3N-01877.RNA-Seq.transcriptome.T.hg38 C3N-01877 UCEC RNA-Seq tumor CPT0352110001 5c8730c9-3360-4757-9cb1-c93a5c003c57.rna_seq.transcriptome.gdc_realn.bam 11438376822 BAM transcriptome harmonized CPTAC3 b761bef1-1fa9-4e3b-8d29-646debe77423 c7b7adb01f88968f680366eeedcdf176 { 'aliquot_tag': 'ALQ_7f0eb6c6', 'gdc_sample_type': 'Primary Tumor' } C3N-01877.WGS.N C3N-01877 UCEC WGS blood_normal CPT0117550002 CPT0117550002.WholeGenome.RP-1303.bam 51574593696 BAM aligned CPTAC3 f8134fb4-b004-4fc6-a48c-5e9431bb419b d6643cb6db1197f785abb13d047be58b { 'aliquot_tag': 'ALQ_70920a71', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01877.WGS.N.hg38 C3N-01877 UCEC WGS blood_normal CPT0117550002 f7c5ef71-dce5-4eb0-867d-19bafd6e518b_wgs_gdc_realn.bam 77237598235 BAM harmonized CPTAC3 30b48662-8f18-4da3-832c-559fb6f6766e 0776c060ba1fdb35c5cdb3666b60b920 { 'aliquot_tag': 'ALQ_70920a71', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01877.WGS.T C3N-01877 UCEC WGS tumor CPT0117510006 CPT0117510006.WholeGenome.RP-1303.bam 59748819595 BAM aligned CPTAC3 a9b42c8d-49a0-4ea0-948b-758c66d3db5a e49b4aad2f88137a1ca74c59029f2c1d { 'aliquot_tag': 'ALQ_827f68a8', 'gdc_sample_type': 'Primary Tumor' } @@ -28025,13 +30057,16 @@ C3N-01878.MethArray.Green.T C3N-01878 UCEC Methylation Array tumor CPT0117560006 C3N-01878.MethArray.Red.T C3N-01878 UCEC Methylation Array tumor CPT0117560006 203219750071_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 7ea7c085-245f-49c0-9a4c-ab94fc44c9af 93fd9ad2f0cf7077411c1c640fff4fd9 { 'aliquot_tag': 'ALQ_305fb4b8', 'gdc_sample_type': 'Primary Tumor' } C3N-01878.miRNA-Seq.T C3N-01878 UCEC miRNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0176_AHYGLVBBXX_CACGAT_S31_L005_R1_001.unaln.bam 192812882 BAM unaligned CPTAC3 1fbc2137-2b26-43c2-9b92-0652df74bee3 a66a171f2242380cbaaa119c8c644104 { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor' } C3N-01878.miRNA-Seq.T.hg38 C3N-01878 UCEC miRNA-Seq tumor CPT0117560009 487e2f7b-ea40-40af-bb33-a4a1dc227321_mirnaseq_gdc_realn.bam 212567175 BAM harmonized CPTAC3 0c55cf48-eab1-4fb2-bb78-aa90a9446ff4 952989cf258fd329096e6f94a77b8c60 { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor' } -C3N-01878.RNA-Seq.chimeric.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 8989215c-f276-4d5b-b034-3e9f3a6b8d30.rna_seq.chimeric.gdc_realn.bam 44758330 BAM chimeric harmonized CPTAC3 bb06e6ac-0767-4e39-b387-cec5002bffe7 f363a772168c2dacaa825785bcc7d790 { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor' } -C3N-01878.RNA-Seq.genomic.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 8989215c-f276-4d5b-b034-3e9f3a6b8d30.rna_seq.genomic.gdc_realn.bam 8417255986 BAM genomic harmonized CPTAC3 792e4014-0eb4-4532-8f4f-c7d761f13c0f eb5f124517c5fd6f9d129048a4d31f00 { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor' } -C3N-01878.RNA-Seq.R1_L003.T C3N-01878 UCEC RNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0177_BH32KTBBXY_CAGATC_S10_L003_R1_001.fastq.gz 3839235837 FASTQ R1_L003 unaligned CPTAC3 970fa09c-f2f0-4c05-b6b4-024d45e36fd0 18e058a95bb0e964ac739c71787a711c { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor' } -C3N-01878.RNA-Seq.R1_.T C3N-01878 UCEC RNA-Seq tumor CPT0352130001 20210714_P1_A9_WB7988_plate1_S9_R1_001.fastq.gz 3153382014 FASTQ R1_ unaligned CPTAC3 84fbf577-cacd-4a26-84aa-6c34c82ef7ae 665748ae98bd5c2a8246dc1f7446e036 { 'aliquot_tag': 'ALQ_5cee5a6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01878.RNA-Seq.R2_L003.T C3N-01878 UCEC RNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0177_BH32KTBBXY_CAGATC_S10_L003_R2_001.fastq.gz 4054585876 FASTQ R2_L003 unaligned CPTAC3 e3140a45-e48e-4db5-b8b7-efc0a547188b 2ee32ef39ff47d815e77b39d601e2432 { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor' } -C3N-01878.RNA-Seq.R2_.T C3N-01878 UCEC RNA-Seq tumor CPT0352130001 20210714_P1_A9_WB7988_plate1_S9_R2_001.fastq.gz 3277664387 FASTQ R2_ unaligned CPTAC3 1727792c-e532-47f1-8cab-b79e64ef6016 987f230c786c696c4a6a44167184dc35 { 'aliquot_tag': 'ALQ_5cee5a6', 'gdc_sample_type': 'Primary Tumor' } -C3N-01878.RNA-Seq.transcriptome.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 8989215c-f276-4d5b-b034-3e9f3a6b8d30.rna_seq.transcriptome.gdc_realn.bam 9928247618 BAM transcriptome harmonized CPTAC3 8aff6d4e-67f2-4f7f-a303-5247e9315b51 1c2985f9c240834af65a7284fc90fef6 { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor' } +C3N-01878.RNA-Seq.chimeric.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 f796bb30-0217-4154-81e8-237aa3a644ec.rna_seq.chimeric.gdc_realn.bam 44772920 BAM chimeric harmonized CPTAC3 a47ceadb-fe73-4c36-90bf-b97770147c8e eb97d972f09a2778adffd94b48d783c1 { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor' } +C3N-01878.RNA-Seq.chimeric.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0352130001 86bd220b-6780-466e-a193-67ef0f48957b.rna_seq.chimeric.gdc_realn.bam 72529338 BAM chimeric harmonized CPTAC3 0f447363-8f14-45a7-b10b-2bb49f26c6b7 57bf2b766309e697ff13d4355836c535 { 'aliquot_tag': 'ALQ_5cee5a6', 'gdc_sample_type': 'Primary Tumor' } +C3N-01878.RNA-Seq.genomic.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 f796bb30-0217-4154-81e8-237aa3a644ec.rna_seq.genomic.gdc_realn.bam 8418554102 BAM genomic harmonized CPTAC3 a9424516-faf2-4883-b093-88a9205f4ad6 b7ffb4df9d428d8b418e11759a07a420 { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor' } +C3N-01878.RNA-Seq.genomic.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0352130001 86bd220b-6780-466e-a193-67ef0f48957b.rna_seq.genomic.gdc_realn.bam 4670799164 BAM genomic harmonized CPTAC3 adf973e4-c075-4265-b8ff-1b7641c3c4b1 7dd0b5a470e04403dc0da6c1f02cbe6d { 'aliquot_tag': 'ALQ_5cee5a6', 'gdc_sample_type': 'Primary Tumor' } +C3N-01878.RNA-Seq.R1_L003.T C3N-01878 UCEC RNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0177_BH32KTBBXY_CAGATC_S10_L003_R1_001.fastq.gz 3839235837 FASTQ R1_L003 unaligned CPTAC3 970fa09c-f2f0-4c05-b6b4-024d45e36fd0 18e058a95bb0e964ac739c71787a711c { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01878.RNA-Seq.R2_L003.T C3N-01878 UCEC RNA-Seq tumor CPT0117560009 190108_UNC31-K00269_0177_BH32KTBBXY_CAGATC_S10_L003_R2_001.fastq.gz 4054585876 FASTQ R2_L003 unaligned CPTAC3 e3140a45-e48e-4db5-b8b7-efc0a547188b 2ee32ef39ff47d815e77b39d601e2432 { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01878.RNA-Seq.T C3N-01878 UCEC RNA-Seq tumor CPT0352130001 20210714_P1_A9_WB7988_plate1_S9_R1_001.fastq.gz 3153382014 FASTQ unaligned CPTAC3 84fbf577-cacd-4a26-84aa-6c34c82ef7ae 665748ae98bd5c2a8246dc1f7446e036 +C3N-01878.RNA-Seq.T C3N-01878 UCEC RNA-Seq tumor CPT0352130001 20210714_P1_A9_WB7988_plate1_S9_R2_001.fastq.gz 3277664387 FASTQ unaligned CPTAC3 1727792c-e532-47f1-8cab-b79e64ef6016 987f230c786c696c4a6a44167184dc35 +C3N-01878.RNA-Seq.transcriptome.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0117560009 f796bb30-0217-4154-81e8-237aa3a644ec.rna_seq.transcriptome.gdc_realn.bam 11313160249 BAM transcriptome harmonized CPTAC3 5472ed40-17f2-489c-9383-d96b91ea3ab8 7814273a94af9487b8268deaa958de35 { 'aliquot_tag': 'ALQ_a0e0a929', 'gdc_sample_type': 'Primary Tumor' } +C3N-01878.RNA-Seq.transcriptome.T.hg38 C3N-01878 UCEC RNA-Seq tumor CPT0352130001 86bd220b-6780-466e-a193-67ef0f48957b.rna_seq.transcriptome.gdc_realn.bam 2616273426 BAM transcriptome harmonized CPTAC3 5780a347-6932-45f9-931e-a0853ec933b8 e0152b67668254d1299c6287bd4ddadd { 'aliquot_tag': 'ALQ_5cee5a6', 'gdc_sample_type': 'Primary Tumor' } C3N-01878.WGS.N C3N-01878 UCEC WGS blood_normal CPT0117620002 CPT0117620002.WholeGenome.RP-1303.bam 56075030402 BAM aligned CPTAC3 cccd727e-a88a-4745-8206-49c022817f18 e77a9a7d750a4c51d0b2adccf018be1d { 'aliquot_tag': 'ALQ_4426a4cf', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01878.WGS.N.hg38 C3N-01878 UCEC WGS blood_normal CPT0117620002 889965f5-7383-44fa-b367-ab31381e72c0_wgs_gdc_realn.bam 80502872579 BAM harmonized CPTAC3 0963c3a8-985f-4f98-bafd-271cac96c249 5775f129a2a14bd9a013ba732346a46c { 'aliquot_tag': 'ALQ_4426a4cf', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01878.WGS.T C3N-01878 UCEC WGS tumor CPT0117560006 CPT0117560006.WholeGenome.RP-1303.bam 60629448902 BAM aligned CPTAC3 cbaba078-f10d-4804-9e59-1a79711c55ab 9e728b66a2eda6677400684b2ef28a4d { 'aliquot_tag': 'ALQ_305fb4b8', 'gdc_sample_type': 'Primary Tumor' } @@ -28044,11 +30079,11 @@ C3N-01879.MethArray.Green.T C3N-01879 UCEC Methylation Array tumor CPT0226860006 C3N-01879.MethArray.Red.T C3N-01879 UCEC Methylation Array tumor CPT0226860006 203561620052_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 92da5234-bed5-4771-8006-6b86a22d6c5d 9f16be437408e335db0c62cbe6c807d1 { 'aliquot_tag': 'ALQ_9db497f4', 'gdc_sample_type': 'Primary Tumor' } C3N-01879.miRNA-Seq.T C3N-01879 UCEC miRNA-Seq tumor CPT0226860009 190508_UNC31-K00269_0215_BH7FYKBBXY_CATGGC_S34_L004_R1_001.unaln.bam 259536011 BAM unaligned CPTAC3 3050e2bb-8216-4e5e-a485-2c0647173119 3d648932d81122e70744ab65596b71aa { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor' } C3N-01879.miRNA-Seq.T.hg38 C3N-01879 UCEC miRNA-Seq tumor CPT0226860009 b01e86d3-3ce3-4622-be24-ba65064c21c6_mirnaseq_gdc_realn.bam 304432949 BAM harmonized CPTAC3 cd1c5194-07e2-47c5-8f4f-ad56671e5cd1 fda5b314e613996bd70350952fce67cd { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor' } -C3N-01879.RNA-Seq.chimeric.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 f62a94f2-4494-4743-86c7-f69b7431af66.rna_seq.chimeric.gdc_realn.bam 35758706 BAM chimeric harmonized CPTAC3 7b76f8ee-a210-4459-8801-83d498f1ea4f c0acbdaa8ee058c123163ae1eacfbc70 { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor' } -C3N-01879.RNA-Seq.genomic.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 f62a94f2-4494-4743-86c7-f69b7431af66.rna_seq.genomic.gdc_realn.bam 8686690731 BAM genomic harmonized CPTAC3 c6de2504-cf6e-4133-bda1-8b3a6b110aa9 43b61353e3d9662ad9e4b3a0893d5775 { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor' } -C3N-01879.RNA-Seq.R1_L002.T C3N-01879 UCEC RNA-Seq tumor CPT0226860009 190523_UNC32-K00270_0176_BH7CW7BBXY_GGTCACGA-GTATTATG_S6_L002_R1_001.fastq.gz 4038180157 FASTQ R1_L002 unaligned CPTAC3 2a468038-2b4b-4622-8cc8-e221b770a9b5 a7d12f29f42f0b275df94c3c255d3b7f { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor' } -C3N-01879.RNA-Seq.R2_L002.T C3N-01879 UCEC RNA-Seq tumor CPT0226860009 190523_UNC32-K00270_0176_BH7CW7BBXY_GGTCACGA-GTATTATG_S6_L002_R2_001.fastq.gz 4662253514 FASTQ R2_L002 unaligned CPTAC3 aa538b39-8eb2-4c6f-8613-5adfbb0219a2 d31417e57007e5790d6e84103284097e { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor' } -C3N-01879.RNA-Seq.transcriptome.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 f62a94f2-4494-4743-86c7-f69b7431af66.rna_seq.transcriptome.gdc_realn.bam 11614393215 BAM transcriptome harmonized CPTAC3 c64436ec-2fde-4b1f-8090-6869c990e534 90d33486de63a8422062ea40b4906cfe { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor' } +C3N-01879.RNA-Seq.chimeric.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 c9db876c-42ce-4ab7-a522-841a140d80f1.rna_seq.chimeric.gdc_realn.bam 35738926 BAM chimeric harmonized CPTAC3 0fed57a0-908a-42b9-bc76-3e4c9a4a6214 7318883fc36c03cf82bd46b7835c113c { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor' } +C3N-01879.RNA-Seq.genomic.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 c9db876c-42ce-4ab7-a522-841a140d80f1.rna_seq.genomic.gdc_realn.bam 8687876639 BAM genomic harmonized CPTAC3 2a4212d0-90d4-472a-a548-ed28ff46f11c 36e34768494dd98e01494553605f3b30 { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor' } +C3N-01879.RNA-Seq.R1_L002.T C3N-01879 UCEC RNA-Seq tumor CPT0226860009 190523_UNC32-K00270_0176_BH7CW7BBXY_GGTCACGA-GTATTATG_S6_L002_R1_001.fastq.gz 4038180157 FASTQ R1_L002 unaligned CPTAC3 2a468038-2b4b-4622-8cc8-e221b770a9b5 a7d12f29f42f0b275df94c3c255d3b7f { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01879.RNA-Seq.R2_L002.T C3N-01879 UCEC RNA-Seq tumor CPT0226860009 190523_UNC32-K00270_0176_BH7CW7BBXY_GGTCACGA-GTATTATG_S6_L002_R2_001.fastq.gz 4662253514 FASTQ R2_L002 unaligned CPTAC3 aa538b39-8eb2-4c6f-8613-5adfbb0219a2 d31417e57007e5790d6e84103284097e { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01879.RNA-Seq.transcriptome.T.hg38 C3N-01879 UCEC RNA-Seq tumor CPT0226860009 c9db876c-42ce-4ab7-a522-841a140d80f1.rna_seq.transcriptome.gdc_realn.bam 13376673290 BAM transcriptome harmonized CPTAC3 70936f76-371d-4151-8ed0-a4e79ec7114b 216f978d83f27a3f921c3429017e392f { 'aliquot_tag': 'ALQ_d0b8a65', 'gdc_sample_type': 'Primary Tumor' } C3N-01879.WGS.N C3N-01879 UCEC WGS blood_normal CPT0226920002 CPT0226920002.WholeGenome.RP-1303.bam 60921275205 BAM aligned CPTAC3 45d8264c-8506-44c1-ad35-7e266defce5d 8b8027affc7e3e97121c87111c1b8ad1 { 'aliquot_tag': 'ALQ_a4052688', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01879.WGS.N.hg38 C3N-01879 UCEC WGS blood_normal CPT0226920002 848de4ff-8a75-413b-a0c2-da83827007cb_wgs_gdc_realn.bam 88924500106 BAM harmonized CPTAC3 390a1350-4bef-48d0-9078-9a1286b6e9c7 8cd70f6a0ae264cb93c07b0ddb42a3b1 { 'aliquot_tag': 'ALQ_a4052688', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01879.WGS.T C3N-01879 UCEC WGS tumor CPT0226860006 CPT0226860006.WholeGenome.RP-1303.bam 73422150794 BAM aligned CPTAC3 a8896b43-f07d-44c2-9121-14bd9f9220da 3fb9a01140f0afb685610def7d79178d { 'aliquot_tag': 'ALQ_9db497f4', 'gdc_sample_type': 'Primary Tumor' } @@ -28061,13 +30096,16 @@ C3N-01880.MethArray.Green.T C3N-01880 UCEC Methylation Array tumor CPT0244510006 C3N-01880.MethArray.Red.T C3N-01880 UCEC Methylation Array tumor CPT0244510006 203561620085_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 49ff4995-61e8-440a-87a6-415552babd23 6fa91e1b6fbc23c6e29402f9a1609f68 { 'aliquot_tag': 'ALQ_c2fa4094', 'gdc_sample_type': 'Primary Tumor' } C3N-01880.miRNA-Seq.T C3N-01880 UCEC miRNA-Seq tumor CPT0244510009 190508_UNC31-K00269_0215_BH7FYKBBXY_TGACCA_S4_L001_R1_001.unaln.bam 259038020 BAM unaligned CPTAC3 d75b26de-6199-4d0f-b906-c82d03b702ff aa449a01b93abdabc1b16a37bce96505 { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor' } C3N-01880.miRNA-Seq.T.hg38 C3N-01880 UCEC miRNA-Seq tumor CPT0244510009 e29c11af-cc00-49a4-8d62-f4921e79a64f_mirnaseq_gdc_realn.bam 295028008 BAM harmonized CPTAC3 cac99c4c-cb62-44db-8d2b-3004b7e88352 14574f5dda669b31c36b6441f278668d { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor' } -C3N-01880.RNA-Seq.chimeric.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 01c281a2-1ac2-41ca-b007-973b35594d3d.rna_seq.chimeric.gdc_realn.bam 34297906 BAM chimeric harmonized CPTAC3 c06e6ae6-57b8-46e0-8e94-35c5592fdb20 693c6c6742f897228add6018e318ac74 { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor' } -C3N-01880.RNA-Seq.genomic.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 01c281a2-1ac2-41ca-b007-973b35594d3d.rna_seq.genomic.gdc_realn.bam 8695786570 BAM genomic harmonized CPTAC3 4b71c060-b923-4ad7-b2f3-1f2d585f5c66 0998e6da755e34556d1c0573efba8d13 { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor' } -C3N-01880.RNA-Seq.R1_L004.T C3N-01880 UCEC RNA-Seq tumor CPT0244510009 190426_UNC32-K00270_0167_AH7CK7BBXY_AAGTCCAA-TATGAGTA_S14_L004_R1_001.fastq.gz 4203382401 FASTQ R1_L004 unaligned CPTAC3 d6857cce-e044-4fe0-b44a-82eba01251a8 7421c9d1da93eb256a1a02e00fc39dfc { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor' } -C3N-01880.RNA-Seq.R1_.T C3N-01880 UCEC RNA-Seq tumor CPT0352200001 20210729_P3_F7_WB7988-Plate3_S67_R1_001.fastq.gz 6201440903 FASTQ R1_ unaligned CPTAC3 2f306b3c-50a6-46b1-9425-7b9712cba72f 2ff3993448a4e4beee0da9c3c9f99995 { 'aliquot_tag': 'ALQ_c4faedd8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01880.RNA-Seq.R2_L004.T C3N-01880 UCEC RNA-Seq tumor CPT0244510009 190426_UNC32-K00270_0167_AH7CK7BBXY_AAGTCCAA-TATGAGTA_S14_L004_R2_001.fastq.gz 4611168749 FASTQ R2_L004 unaligned CPTAC3 88c11e88-92c6-4c9f-9cbe-7e24d82c1278 2801ffc7b48bc7eda0c043b199dfa521 { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor' } -C3N-01880.RNA-Seq.R2_.T C3N-01880 UCEC RNA-Seq tumor CPT0352200001 20210729_P3_F7_WB7988-Plate3_S67_R2_001.fastq.gz 6412025741 FASTQ R2_ unaligned CPTAC3 e316a345-3165-42fc-ace6-97793571cbb9 911a5cd180a992b52fbca139ae5e942f { 'aliquot_tag': 'ALQ_c4faedd8', 'gdc_sample_type': 'Primary Tumor' } -C3N-01880.RNA-Seq.transcriptome.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 01c281a2-1ac2-41ca-b007-973b35594d3d.rna_seq.transcriptome.gdc_realn.bam 9711541822 BAM transcriptome harmonized CPTAC3 35ef9d59-f3cf-4511-bcf2-f4f794fd8730 b2555ac318a4d252b684384882a019ba { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor' } +C3N-01880.RNA-Seq.chimeric.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 6ec55555-0a4c-4b92-9b97-1bdbe12541a4.rna_seq.chimeric.gdc_realn.bam 34280970 BAM chimeric harmonized CPTAC3 0baca6a2-ac75-4c05-a874-15fc8cdf7702 d705a72fbe168f0e5f386085ec77660b { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor' } +C3N-01880.RNA-Seq.chimeric.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0352200001 22766f31-7a8e-4266-ade1-d249a6fcdb1a.rna_seq.chimeric.gdc_realn.bam 263293699 BAM chimeric harmonized CPTAC3 7098733c-8601-4e45-a8ce-f1e58f6558f9 b2087e837e982025e1c40eb24aacde4b { 'aliquot_tag': 'ALQ_c4faedd8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01880.RNA-Seq.genomic.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 6ec55555-0a4c-4b92-9b97-1bdbe12541a4.rna_seq.genomic.gdc_realn.bam 8697369420 BAM genomic harmonized CPTAC3 dee514f8-542a-42b0-941a-7edbba871fc1 cbe1965659111af8c5dacf9df77f7433 { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor' } +C3N-01880.RNA-Seq.genomic.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0352200001 22766f31-7a8e-4266-ade1-d249a6fcdb1a.rna_seq.genomic.gdc_realn.bam 10260283530 BAM genomic harmonized CPTAC3 a021196c-c20c-47df-85a8-c1bc05e98f91 91f04b41f04747f5c4aaaaa6f915d7ae { 'aliquot_tag': 'ALQ_c4faedd8', 'gdc_sample_type': 'Primary Tumor' } +C3N-01880.RNA-Seq.R1_L004.T C3N-01880 UCEC RNA-Seq tumor CPT0244510009 190426_UNC32-K00270_0167_AH7CK7BBXY_AAGTCCAA-TATGAGTA_S14_L004_R1_001.fastq.gz 4203382401 FASTQ R1_L004 unaligned CPTAC3 d6857cce-e044-4fe0-b44a-82eba01251a8 7421c9d1da93eb256a1a02e00fc39dfc { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01880.RNA-Seq.R2_L004.T C3N-01880 UCEC RNA-Seq tumor CPT0244510009 190426_UNC32-K00270_0167_AH7CK7BBXY_AAGTCCAA-TATGAGTA_S14_L004_R2_001.fastq.gz 4611168749 FASTQ R2_L004 unaligned CPTAC3 88c11e88-92c6-4c9f-9cbe-7e24d82c1278 2801ffc7b48bc7eda0c043b199dfa521 { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01880.RNA-Seq.T C3N-01880 UCEC RNA-Seq tumor CPT0352200001 20210729_P3_F7_WB7988-Plate3_S67_R1_001.fastq.gz 6201440903 FASTQ unaligned CPTAC3 2f306b3c-50a6-46b1-9425-7b9712cba72f 2ff3993448a4e4beee0da9c3c9f99995 +C3N-01880.RNA-Seq.T C3N-01880 UCEC RNA-Seq tumor CPT0352200001 20210729_P3_F7_WB7988-Plate3_S67_R2_001.fastq.gz 6412025741 FASTQ unaligned CPTAC3 e316a345-3165-42fc-ace6-97793571cbb9 911a5cd180a992b52fbca139ae5e942f +C3N-01880.RNA-Seq.transcriptome.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0244510009 6ec55555-0a4c-4b92-9b97-1bdbe12541a4.rna_seq.transcriptome.gdc_realn.bam 11254460927 BAM transcriptome harmonized CPTAC3 1db7a820-a44a-4ea6-b5a3-55d69bbb96b4 dbe3446fb43c19748545487c6673ad67 { 'aliquot_tag': 'ALQ_52455d05', 'gdc_sample_type': 'Primary Tumor' } +C3N-01880.RNA-Seq.transcriptome.T.hg38 C3N-01880 UCEC RNA-Seq tumor CPT0352200001 22766f31-7a8e-4266-ade1-d249a6fcdb1a.rna_seq.transcriptome.gdc_realn.bam 4425805828 BAM transcriptome harmonized CPTAC3 6e8a6f85-a97d-4665-9571-8fca8d6fd9c7 e32883f9eab7a11eee0d66b27d4bc9bb { 'aliquot_tag': 'ALQ_c4faedd8', 'gdc_sample_type': 'Primary Tumor' } C3N-01880.WGS.N C3N-01880 UCEC WGS blood_normal CPT0244560002 CPT0244560002.WholeGenome.RP-1303.bam 80253521838 BAM aligned CPTAC3 cd597b48-4d5b-4915-88b4-73515b19849f 9cde4b79757cc15330dd8c4225339fe2 { 'aliquot_tag': 'ALQ_77b7589d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01880.WGS.N.hg38 C3N-01880 UCEC WGS blood_normal CPT0244560002 1f1edace-64cf-49f2-b523-58f4a1ff2a04_wgs_gdc_realn.bam 117146846013 BAM harmonized CPTAC3 96d2e55b-836f-4013-b867-4703e7a2030a f4ce680aa21ec9405283293bcb9d6811 { 'aliquot_tag': 'ALQ_77b7589d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01880.WGS.T C3N-01880 UCEC WGS tumor CPT0244510006 CPT0244510006.WholeGenome.RP-1303.bam 64775323574 BAM aligned CPTAC3 3d3e4424-a74c-45c6-adcb-3fb6506bbe08 dec1737320f2835eb004000e6b29543b { 'aliquot_tag': 'ALQ_c2fa4094', 'gdc_sample_type': 'Primary Tumor' } @@ -28086,12 +30124,12 @@ C3N-01892.miRNA-Seq.T C3N-01892 LSCC miRNA-Seq tumor CPT0126390009 181219_UNC31- C3N-01892.miRNA-Seq.T.hg38 C3N-01892 LSCC miRNA-Seq tumor CPT0126390009 4cd0a6f5-e248-4fe5-b25e-176afc6720f7_mirnaseq_gdc_realn.bam 217451505 BAM harmonized CPTAC3 5b2fb840-29db-4b49-b952-f978a98942a1 ab86400b61c11d5264c7bb1adeccfc5d { 'aliquot_tag': 'ALQ_dc11d1b2', 'gdc_sample_type': 'Primary Tumor' } C3N-01892.RNA-Seq.chimeric.A.hg38 C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 8d9d9158-6029-49b6-81f4-b2a45073d8fa.rna_seq.chimeric.gdc_realn.bam 29377706 BAM chimeric harmonized CPTAC3 b3c20470-f3b6-4227-a2c8-a9c7e4854a90 a316e8eae8328fc32851d527ad1732ec { 'aliquot_tag': 'ALQ_cc04837b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01892.RNA-Seq.chimeric.T.hg38 C3N-01892 LSCC RNA-Seq tumor CPT0126390009 2b8c2922-5a46-4a85-aebd-46a67a7981e8.rna_seq.chimeric.gdc_realn.bam 133399353 BAM chimeric harmonized CPTAC3 b1d908b8-b684-4e52-9f06-b27f409f932a 5a1de12a6f9f56377ee361e4a82f6302 { 'aliquot_tag': 'ALQ_dc11d1b2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01892.RNA-Seq.genomic.A.hg38 C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 8d9d9158-6029-49b6-81f4-b2a45073d8fa.rna_seq.genomic.gdc_realn.bam 8753697480 BAM genomic harmonized CPTAC3 cd5e2e16-0226-42f2-abd1-e98156c44bf5 d35c1bb7221d2f12a3cd2badc72d48a2 { 'aliquot_tag': 'ALQ_cc04837b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01892.RNA-Seq.genomic.T.hg38 C3N-01892 LSCC RNA-Seq tumor CPT0126390009 2b8c2922-5a46-4a85-aebd-46a67a7981e8.rna_seq.genomic.gdc_realn.bam 9948339463 BAM genomic harmonized CPTAC3 b2f74c25-5e1a-4c37-a711-9e8eff00541d fc05f4bc556ef7c7a1f098a26fc902ad { 'aliquot_tag': 'ALQ_dc11d1b2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01892.RNA-Seq.R1_L001.T C3N-01892 LSCC RNA-Seq tumor CPT0126390009 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L001_R1_001.fastq.gz 4383784537 FASTQ R1_L001 unaligned CPTAC3 1c078fa3-dc53-4544-aee0-27967d868da1 ecbe35263025a218b7d67ee1189d341b { 'aliquot_tag': 'ALQ_dc11d1b2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01892.RNA-Seq.R1_L007.A C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 3975936000 FASTQ R1_L007 unaligned CPTAC3 85c2ee4c-aaad-4171-bfc7-92090c09a5e9 b91f3bfaa9c3b5c66dd243ac398863e9 { 'aliquot_tag': 'ALQ_cc04837b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01892.RNA-Seq.R2_L001.T C3N-01892 LSCC RNA-Seq tumor CPT0126390009 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L001_R2_001.fastq.gz 4615445263 FASTQ R2_L001 unaligned CPTAC3 07c9c548-d6cb-4061-a8ae-e38fb4153d93 acfb591af56bd5f0d169f5dda79c2882 { 'aliquot_tag': 'ALQ_dc11d1b2', 'gdc_sample_type': 'Primary Tumor' } -C3N-01892.RNA-Seq.R2_L007.A C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4111613314 FASTQ R2_L007 unaligned CPTAC3 68ec7002-bf61-4f73-87be-d9ac22afc871 682cc9002f2312848f51a7704e09fdb9 { 'aliquot_tag': 'ALQ_cc04837b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01892.RNA-Seq.genomic.A.hg38 C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 8d9d9158-6029-49b6-81f4-b2a45073d8fa.rna_seq.genomic.gdc_realn.bam 8753697480 BAM genomic harmonized CPTAC3 2effb7dc-686e-4fd2-93d2-9f61b4f865e2 d35c1bb7221d2f12a3cd2badc72d48a2 { 'aliquot_tag': 'ALQ_cc04837b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01892.RNA-Seq.genomic.T.hg38 C3N-01892 LSCC RNA-Seq tumor CPT0126390009 2b8c2922-5a46-4a85-aebd-46a67a7981e8.rna_seq.genomic.gdc_realn.bam 9948339463 BAM genomic harmonized CPTAC3 ad18d199-64a6-40d9-ac24-ac43f902769b fc05f4bc556ef7c7a1f098a26fc902ad { 'aliquot_tag': 'ALQ_dc11d1b2', 'gdc_sample_type': 'Primary Tumor' } +C3N-01892.RNA-Seq.R1_L001.T C3N-01892 LSCC RNA-Seq tumor CPT0126390009 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L001_R1_001.fastq.gz 4383784537 FASTQ R1_L001 unaligned CPTAC3 1c078fa3-dc53-4544-aee0-27967d868da1 ecbe35263025a218b7d67ee1189d341b { 'aliquot_tag': 'ALQ_dc11d1b2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-01892.RNA-Seq.R1_L007.A C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 3975936000 FASTQ R1_L007 unaligned CPTAC3 85c2ee4c-aaad-4171-bfc7-92090c09a5e9 b91f3bfaa9c3b5c66dd243ac398863e9 { 'aliquot_tag': 'ALQ_cc04837b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01892.RNA-Seq.R2_L001.T C3N-01892 LSCC RNA-Seq tumor CPT0126390009 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L001_R2_001.fastq.gz 4615445263 FASTQ R2_L001 unaligned CPTAC3 07c9c548-d6cb-4061-a8ae-e38fb4153d93 acfb591af56bd5f0d169f5dda79c2882 { 'aliquot_tag': 'ALQ_dc11d1b2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-01892.RNA-Seq.R2_L007.A C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4111613314 FASTQ R2_L007 unaligned CPTAC3 68ec7002-bf61-4f73-87be-d9ac22afc871 682cc9002f2312848f51a7704e09fdb9 { 'aliquot_tag': 'ALQ_cc04837b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-01892.RNA-Seq.transcriptome.A.hg38 C3N-01892 LSCC RNA-Seq tissue_normal CPT0126400009 8d9d9158-6029-49b6-81f4-b2a45073d8fa.rna_seq.transcriptome.gdc_realn.bam 11033042745 BAM transcriptome harmonized CPTAC3 0686eb2f-04c4-4f9c-9ced-96fd34ab6d60 bdb3161f38ea51be62739cc2a5c43018 { 'aliquot_tag': 'ALQ_cc04837b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01892.RNA-Seq.transcriptome.T.hg38 C3N-01892 LSCC RNA-Seq tumor CPT0126390009 2b8c2922-5a46-4a85-aebd-46a67a7981e8.rna_seq.transcriptome.gdc_realn.bam 11767527283 BAM transcriptome harmonized CPTAC3 48d68d4e-5c9b-4f34-9ed6-1eedfb6e4b31 4f4f10bf48cde901062f823bcecdb639 { 'aliquot_tag': 'ALQ_dc11d1b2', 'gdc_sample_type': 'Primary Tumor' } C3N-01892.WGS.A C3N-01892 LSCC WGS tissue_normal CPT0126400006 CPT0126400006.WholeGenome.RP-1303.bam 59921388930 BAM aligned CPTAC3 60c11bdf-7455-4f50-ad2b-d7a6d2aa4565 fe3a7ca527131b1ec258d04bb0514396 { 'aliquot_tag': 'ALQ_5cbb9eea', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -28116,12 +30154,12 @@ C3N-01893.miRNA-Seq.T C3N-01893 LSCC miRNA-Seq tumor CPT0126450009 181219_UNC31- C3N-01893.miRNA-Seq.T.hg38 C3N-01893 LSCC miRNA-Seq tumor CPT0126450009 ba9dc134-d2b1-4982-b717-c8753a9f481f_mirnaseq_gdc_realn.bam 297530247 BAM harmonized CPTAC3 1760d281-8ed4-4658-801e-f047355da221 24d38e373f61cc82c1aa3d74eb6fd23e { 'aliquot_tag': 'ALQ_4e40c0b', 'gdc_sample_type': 'Primary Tumor' } C3N-01893.RNA-Seq.chimeric.A.hg38 C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 34b957ff-1309-469b-88d2-62f5e1634806.rna_seq.chimeric.gdc_realn.bam 24385634 BAM chimeric harmonized CPTAC3 e43b693e-bf7a-4f2a-9a23-96f36496c477 29f9a6dd3ac695c30177c9501d136ba9 { 'aliquot_tag': 'ALQ_7e245f6b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01893.RNA-Seq.chimeric.T.hg38 C3N-01893 LSCC RNA-Seq tumor CPT0126450009 39c77978-ddeb-4f95-afa6-e7d7ae293662.rna_seq.chimeric.gdc_realn.bam 29275566 BAM chimeric harmonized CPTAC3 af5dd776-3962-438b-b273-caab463aa105 457ede56dbce75be2c42fa1210e57d61 { 'aliquot_tag': 'ALQ_4e40c0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01893.RNA-Seq.genomic.A.hg38 C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 34b957ff-1309-469b-88d2-62f5e1634806.rna_seq.genomic.gdc_realn.bam 7758043846 BAM genomic harmonized CPTAC3 8d74fbd7-4c30-4b74-aa00-79c7f0d252de 3b4f409b5866fe6642b1daba0d6bdfae { 'aliquot_tag': 'ALQ_7e245f6b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01893.RNA-Seq.genomic.T.hg38 C3N-01893 LSCC RNA-Seq tumor CPT0126450009 39c77978-ddeb-4f95-afa6-e7d7ae293662.rna_seq.genomic.gdc_realn.bam 9221824929 BAM genomic harmonized CPTAC3 8d211aa7-8bcb-4c0b-aa2f-2a0bf9899e3c b1d90756e8763f5ddb13150357f9982d { 'aliquot_tag': 'ALQ_4e40c0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01893.RNA-Seq.R1_L007.A C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3424618552 FASTQ R1_L007 unaligned CPTAC3 17a7dd75-5afc-4255-ab09-b3b56bf1f927 90271a9553c95d02e1ceb53efc9be932 { 'aliquot_tag': 'ALQ_7e245f6b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01893.RNA-Seq.R1_L007.T C3N-01893 LSCC RNA-Seq tumor CPT0126450009 180925_UNC32-K00270_0122_BHWNF7BBXX_CTTGTA_S28_L007_R1_001.fastq.gz 3985527794 FASTQ R1_L007 unaligned CPTAC3 4e602d6b-1d29-4c56-acdb-241cc128861d c4b76bbbc36937f4903df6be3ee5dc9f { 'aliquot_tag': 'ALQ_4e40c0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01893.RNA-Seq.R2_L007.A C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 3493300854 FASTQ R2_L007 unaligned CPTAC3 a69bb6ca-fcdf-4ba2-a40e-8e2cfc42293e 8d038680b510495b648befdd6108161e { 'aliquot_tag': 'ALQ_7e245f6b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01893.RNA-Seq.R2_L007.T C3N-01893 LSCC RNA-Seq tumor CPT0126450009 180925_UNC32-K00270_0122_BHWNF7BBXX_CTTGTA_S28_L007_R2_001.fastq.gz 4192059117 FASTQ R2_L007 unaligned CPTAC3 943fbee4-66f9-42ab-9a74-e81edb1d5fb1 e696fd675c1f69621960afac0d0fa242 { 'aliquot_tag': 'ALQ_4e40c0b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01893.RNA-Seq.genomic.A.hg38 C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 34b957ff-1309-469b-88d2-62f5e1634806.rna_seq.genomic.gdc_realn.bam 7758043846 BAM genomic harmonized CPTAC3 512e599d-f056-4e01-be0e-b15b01f66fef 3b4f409b5866fe6642b1daba0d6bdfae { 'aliquot_tag': 'ALQ_7e245f6b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01893.RNA-Seq.genomic.T.hg38 C3N-01893 LSCC RNA-Seq tumor CPT0126450009 39c77978-ddeb-4f95-afa6-e7d7ae293662.rna_seq.genomic.gdc_realn.bam 9221824929 BAM genomic harmonized CPTAC3 e10b2011-6f9b-48e7-b7e0-6ceeeac23666 b1d90756e8763f5ddb13150357f9982d { 'aliquot_tag': 'ALQ_4e40c0b', 'gdc_sample_type': 'Primary Tumor' } +C3N-01893.RNA-Seq.R1_L007.A C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3424618552 FASTQ R1_L007 unaligned CPTAC3 17a7dd75-5afc-4255-ab09-b3b56bf1f927 90271a9553c95d02e1ceb53efc9be932 { 'aliquot_tag': 'ALQ_7e245f6b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01893.RNA-Seq.R1_L007.T C3N-01893 LSCC RNA-Seq tumor CPT0126450009 180925_UNC32-K00270_0122_BHWNF7BBXX_CTTGTA_S28_L007_R1_001.fastq.gz 3985527794 FASTQ R1_L007 unaligned CPTAC3 4e602d6b-1d29-4c56-acdb-241cc128861d c4b76bbbc36937f4903df6be3ee5dc9f { 'aliquot_tag': 'ALQ_4e40c0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01893.RNA-Seq.R2_L007.A C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 3493300854 FASTQ R2_L007 unaligned CPTAC3 a69bb6ca-fcdf-4ba2-a40e-8e2cfc42293e 8d038680b510495b648befdd6108161e { 'aliquot_tag': 'ALQ_7e245f6b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01893.RNA-Seq.R2_L007.T C3N-01893 LSCC RNA-Seq tumor CPT0126450009 180925_UNC32-K00270_0122_BHWNF7BBXX_CTTGTA_S28_L007_R2_001.fastq.gz 4192059117 FASTQ R2_L007 unaligned CPTAC3 943fbee4-66f9-42ab-9a74-e81edb1d5fb1 e696fd675c1f69621960afac0d0fa242 { 'aliquot_tag': 'ALQ_4e40c0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01893.RNA-Seq.transcriptome.A.hg38 C3N-01893 LSCC RNA-Seq tissue_normal CPT0126470009 34b957ff-1309-469b-88d2-62f5e1634806.rna_seq.transcriptome.gdc_realn.bam 9291273921 BAM transcriptome harmonized CPTAC3 b276586b-b393-4b7a-8d5b-d82feac992d8 de8847808c9b9c263d2bf1dbc0cf2f9f { 'aliquot_tag': 'ALQ_7e245f6b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01893.RNA-Seq.transcriptome.T.hg38 C3N-01893 LSCC RNA-Seq tumor CPT0126450009 39c77978-ddeb-4f95-afa6-e7d7ae293662.rna_seq.transcriptome.gdc_realn.bam 11631920863 BAM transcriptome harmonized CPTAC3 3d18765b-c10e-4ae2-91d2-8949ebe78339 7e6fd056456bd3028d7990c4ff6f9277 { 'aliquot_tag': 'ALQ_4e40c0b', 'gdc_sample_type': 'Primary Tumor' } C3N-01893.WGS.A C3N-01893 LSCC WGS tissue_normal CPT0126470006 CPT0126470006.WholeGenome.RP-1303.bam 57066237444 BAM aligned CPTAC3 34157c2c-5e79-4b41-adea-17e6a1065af7 8fd68d8fdbe8be9632a5db16343bab52 { 'aliquot_tag': 'ALQ_ee9b42fa', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -28150,62 +30188,80 @@ C3N-01897.DUP_b81fa86b.WXS.T C3N-01897 PDA WXS tumor CPT0162300019 CPT0162300019 C3N-01897.DUP_b81fa86b.WXS.T.hg38 C3N-01897 PDA WXS tumor CPT0162300019 6096e349-183e-41d9-8d19-8dc690c9137e_wxs_gdc_realn.bam 94888641588 BAM harmonized CPTAC3 9275086f-3c69-403f-9051-2c857279c158 4fd17ea762785c62b06eaac8819e4c97 { 'aliquot_tag': 'DUP_b81fa86b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA Pilot - core-derived DNA' } C3N-01897.miRNA-Seq.T C3N-01897 PDA miRNA-Seq tumor CPT0162300016 190108_UNC31-K00269_0176_AHYGLVBBXX_TTAGGC_S3_L002_R1_001.unaln.bam 170805407 BAM unaligned CPTAC3 647b8a60-ede8-42cb-8ecd-803f74d97945 3eedc53c5ccdc6ea838dadcb88cbcacb { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor' } C3N-01897.miRNA-Seq.T.hg38 C3N-01897 PDA miRNA-Seq tumor CPT0162300016 1ae4985d-1671-490c-86f9-b699cd136111_mirnaseq_gdc_realn.bam 191030037 BAM harmonized CPTAC3 ee1d3e3b-da43-4fb7-b3ad-44c7c946bbb9 8a3914b550293d97d61ef06d39ea8e99 { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-01897.RNA-Seq.chimeric.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 47470daa-3006-43c8-9e62-9bf5bee521fc.rna_seq.chimeric.gdc_realn.bam 18321765 BAM chimeric harmonized CPTAC3 f20e1415-044e-4d3a-8a18-4816205cce8c a39275ea287f077044e2d2a8b3cfd778 { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-01897.RNA-Seq.genomic.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 47470daa-3006-43c8-9e62-9bf5bee521fc.rna_seq.genomic.gdc_realn.bam 12072962303 BAM genomic harmonized CPTAC3 2f89df8c-0e61-443f-864c-3484e1b8dc03 e2efd7ab57adb19e8f4a48273aaf9b3d { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-01897.RNA-Seq.R1_L002.T C3N-01897 PDA RNA-Seq tumor CPT0162300016 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R1_001.fastq.gz 3621322188 FASTQ R1_L002 unaligned CPTAC3 393c145c-4d08-45f0-bd45-efd44aa457d4 3f77f0ba65221b1153bc417e2d3634a8 { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-01897.RNA-Seq.R2_L002.T C3N-01897 PDA RNA-Seq tumor CPT0162300016 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R2_001.fastq.gz 3895274347 FASTQ R2_L002 unaligned CPTAC3 ec5a4c86-6c49-41a3-b04a-4983b4862110 0985057cf12dc9579f5bff00f2be9924 { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-01897.RNA-Seq.transcriptome.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 47470daa-3006-43c8-9e62-9bf5bee521fc.rna_seq.transcriptome.gdc_realn.bam 8155854347 BAM transcriptome harmonized CPTAC3 35ffb734-f78f-4f77-add5-d28a5f812247 455ac2586e7af871112967f713dc6b8b { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor' } +C3N-01897.RNA-Seq.chimeric.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 69c378d4-e172-4fc9-9d12-232ce55e5eae.rna_seq.chimeric.gdc_realn.bam 18310796 BAM chimeric harmonized CPTAC3 92f9203c-5bc4-4177-815e-7525f01e5427 5b642fd068e8470bdf8c35127219eadb { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor' } +C3N-01897.RNA-Seq.genomic.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 69c378d4-e172-4fc9-9d12-232ce55e5eae.rna_seq.genomic.gdc_realn.bam 12076518929 BAM genomic harmonized CPTAC3 a187e914-dd4a-4844-a928-31ce5b57e001 b10aaa4d15eb584995a5b1a51c53a61d { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor' } +C3N-01897.RNA-Seq.R1_L002.T C3N-01897 PDA RNA-Seq tumor CPT0162300016 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R1_001.fastq.gz 3621322188 FASTQ R1_L002 unaligned CPTAC3 393c145c-4d08-45f0-bd45-efd44aa457d4 3f77f0ba65221b1153bc417e2d3634a8 { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01897.RNA-Seq.R2_L002.T C3N-01897 PDA RNA-Seq tumor CPT0162300016 190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R2_001.fastq.gz 3895274347 FASTQ R2_L002 unaligned CPTAC3 ec5a4c86-6c49-41a3-b04a-4983b4862110 0985057cf12dc9579f5bff00f2be9924 { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01897.RNA-Seq.transcriptome.T.hg38 C3N-01897 PDA RNA-Seq tumor CPT0162300016 69c378d4-e172-4fc9-9d12-232ce55e5eae.rna_seq.transcriptome.gdc_realn.bam 8895724461 BAM transcriptome harmonized CPTAC3 9a68ebb1-f657-43c1-a093-a07153bca574 555a4687d9fbaf0f5f0adf1096a7d115 { 'aliquot_tag': 'ALQ_28a0b5fa', 'gdc_sample_type': 'Primary Tumor' } C3N-01897.WGS.N C3N-01897 PDA WGS blood_normal CPT0162360002 CPT0162360002.WholeGenome.RP-1303.bam 78111846322 BAM aligned CPTAC3 47c10473-1eb8-4915-9f71-1b37cc89d09e 1cd0eadfec21242f528c8d35da82cb5a { 'aliquot_tag': 'ALQ_b996b502', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01897.WGS.N.hg38 C3N-01897 PDA WGS blood_normal CPT0162360002 3bb8fcc8-1937-48f1-adf3-9431e7ea7f24_wgs_gdc_realn.bam 111496052020 BAM harmonized CPTAC3 d97d2ce5-d2dc-48f3-8918-b4023e0d16c0 e1c7be3889a846c5ab3a1ee84df0c3d9 { 'aliquot_tag': 'ALQ_b996b502', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01897.WXS.N C3N-01897 PDA WXS blood_normal CPT0162360002 CPT0162360002.WholeExome.RP-1303.bam 21906030833 BAM aligned CPTAC3 e40ea4d3-8d13-42a4-8b2e-e774765273b7 788367c611fda17a8bba118ec3df2f0b { 'aliquot_tag': 'ALQ_b996b502', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01897.WXS.N.hg38 C3N-01897 PDA WXS blood_normal CPT0162360002 3bb8fcc8-1937-48f1-adf3-9431e7ea7f24_wxs_gdc_realn.bam 30186380588 BAM harmonized CPTAC3 9eacaf4b-96a4-4053-b3cb-c725c77a347b 011dd0f8e3dbd30c9774ac7ab141ce79 { 'aliquot_tag': 'ALQ_b996b502', 'gdc_sample_type': 'Blood Derived Normal' } -C3N-01898.ANN_d44580ff.RNA-Seq.chimeric.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 741bc6bf-0854-4b8c-b4ff-a80fe2f8ac46.rna_seq.chimeric.gdc_realn.bam 289173306 BAM chimeric harmonized CPTAC3 ba4b882d-067b-49c7-a903-a4a3c8f954a9 53c7c36b9c180d02d566bca7f87cb8f5 { 'aliquot_tag': 'ANN_d44580ff', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01898.ANN_d44580ff.RNA-Seq.genomic.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 741bc6bf-0854-4b8c-b4ff-a80fe2f8ac46.rna_seq.genomic.gdc_realn.bam 8527956869 BAM genomic harmonized CPTAC3 63ea1b1d-2442-4b87-8f18-242f980c060b 31a72a24a78dc69acb8f332e0127b1cc { 'aliquot_tag': 'ANN_d44580ff', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01898.ANN_d44580ff.RNA-Seq.R1_L007.T C3N-01898 PDA RNA-Seq tumor CPT0162380028 200807_UNC32-K00270_0255_AHHY2WBBXY_GCCACAGG-CATGCCAT_S10_L007_R1_001.fastq.gz 3316609926 FASTQ R1_L007 unaligned CPTAC3 694277e7-1aff-43fb-8e21-b273a0c01c0c c1e841ac4e503251103bbeebbb84d3a0 { 'aliquot_tag': 'ANN_d44580ff', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01898.ANN_d44580ff.RNA-Seq.R2_L007.T C3N-01898 PDA RNA-Seq tumor CPT0162380028 200807_UNC32-K00270_0255_AHHY2WBBXY_GCCACAGG-CATGCCAT_S10_L007_R2_001.fastq.gz 3701937380 FASTQ R2_L007 unaligned CPTAC3 a19de46c-14a1-4ce2-b5d4-a9b165d0de3c ae2f903c68f12ed0b289f0c01dbf17e5 { 'aliquot_tag': 'ANN_d44580ff', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01898.ANN_d44580ff.RNA-Seq.transcriptome.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 741bc6bf-0854-4b8c-b4ff-a80fe2f8ac46.rna_seq.transcriptome.gdc_realn.bam 8247726459 BAM transcriptome harmonized CPTAC3 7a91f975-56f8-463c-84a7-c686129eb136 fde1f4fcb2d5f16c284553214f937153 { 'aliquot_tag': 'ANN_d44580ff', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01898.ANN_d44580ff.RNA-Seq.chimeric.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 5d3444ae-654b-4a28-809e-5bc047f5ae09.rna_seq.chimeric.gdc_realn.bam 289228792 BAM chimeric harmonized CPTAC3 acdee08f-d4a5-4fd3-80f2-35c2cf7d4299 6e92dd1b824ad56ee326141af008b606 { 'aliquot_tag': 'ANN_d44580ff', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01898.ANN_d44580ff.RNA-Seq.genomic.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 5d3444ae-654b-4a28-809e-5bc047f5ae09.rna_seq.genomic.gdc_realn.bam 8543070025 BAM genomic harmonized CPTAC3 070ffc1c-31af-4363-a21e-9d9701e6de1c 85b3d5c4cea6728e6352eecb1bf19b02 { 'aliquot_tag': 'ANN_d44580ff', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01898.ANN_d44580ff.RNA-Seq.R1_L007.T C3N-01898 PDA RNA-Seq tumor CPT0162380028 200807_UNC32-K00270_0255_AHHY2WBBXY_GCCACAGG-CATGCCAT_S10_L007_R1_001.fastq.gz 3316609926 FASTQ R1_L007 unaligned CPTAC3 694277e7-1aff-43fb-8e21-b273a0c01c0c c1e841ac4e503251103bbeebbb84d3a0 { 'aliquot_tag': 'ANN_d44580ff', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L007' } +C3N-01898.ANN_d44580ff.RNA-Seq.R2_L007.T C3N-01898 PDA RNA-Seq tumor CPT0162380028 200807_UNC32-K00270_0255_AHHY2WBBXY_GCCACAGG-CATGCCAT_S10_L007_R2_001.fastq.gz 3701937380 FASTQ R2_L007 unaligned CPTAC3 a19de46c-14a1-4ce2-b5d4-a9b165d0de3c ae2f903c68f12ed0b289f0c01dbf17e5 { 'aliquot_tag': 'ANN_d44580ff', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L007' } +C3N-01898.ANN_d44580ff.RNA-Seq.transcriptome.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380028 5d3444ae-654b-4a28-809e-5bc047f5ae09.rna_seq.transcriptome.gdc_realn.bam 9306202193 BAM transcriptome harmonized CPTAC3 70fc8ddd-d683-435a-978e-32ffe2459a24 92ac23deb7105a4d4939b285e70c064b { 'aliquot_tag': 'ANN_d44580ff', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } C3N-01898.DUP_2ae69cb9.WXS.T C3N-01898 PDA WXS tumor CPT0162380036 CPT0162380036.WholeExome.RP-1303.bam 24609711611 BAM aligned CPTAC3 f55b2b16-ec4f-41fd-91b1-040f0ed14f07 d9eb9772171cef19621447c72c5f6e9f { 'aliquot_tag': 'DUP_2ae69cb9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01898.DUP_2ae69cb9.WXS.T.hg38 C3N-01898 PDA WXS tumor CPT0162380036 cd1f7189-9831-45a1-84a6-3da46157af2f_wxs_gdc_realn.bam 33886822915 BAM harmonized CPTAC3 cb728c75-d293-4d51-8fc2-d7bb149df890 b63571735ed7461fd71608e9e3c8d68d { 'aliquot_tag': 'DUP_2ae69cb9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-01898.DUP_6081859f.RNA-Seq.chimeric.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 b76239bf-70ee-477e-a3f3-f9b1b6425c49.rna_seq.chimeric.gdc_realn.bam 114455235 BAM chimeric harmonized CPTAC3 96120554-bff3-4ef4-8bf5-277d28ae620e 09dc027828665a4bf459407ac56db228 { 'aliquot_tag': 'DUP_6081859f', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01898.DUP_6081859f.RNA-Seq.genomic.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 b76239bf-70ee-477e-a3f3-f9b1b6425c49.rna_seq.genomic.gdc_realn.bam 9921411183 BAM genomic harmonized CPTAC3 2360c285-6f1a-4ed4-81f8-59eb4e9e3f97 c08c6461be18a3210be0dfc064e7fc0b { 'aliquot_tag': 'DUP_6081859f', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01898.DUP_6081859f.RNA-Seq.R1_L004.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L004_R1_001.fastq.gz 3603292349 FASTQ R1_L004 unaligned CPTAC3 8ff8e21d-54cc-491e-a2e8-c7e5e50f0a08 86aac5a81dbc4a4698d9c3a0b867a095 { 'aliquot_tag': 'DUP_6081859f', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L004' } +C3N-01898.DUP_6081859f.RNA-Seq.R2_L004.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L004_R2_001.fastq.gz 3993881614 FASTQ R2_L004 unaligned CPTAC3 77accb30-a7ff-4041-a7b9-17f73e1a050e 5fe427ddbb709e38bcb3f718ce60cbc4 { 'aliquot_tag': 'DUP_6081859f', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L004' } +C3N-01898.DUP_6081859f.RNA-Seq.transcriptome.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 b76239bf-70ee-477e-a3f3-f9b1b6425c49.rna_seq.transcriptome.gdc_realn.bam 9745584213 BAM transcriptome harmonized CPTAC3 8c9ee4f3-1eb0-4a55-8d82-60f6080c8d36 9bf3de58b4922dd17e008ea8d48797bd { 'aliquot_tag': 'DUP_6081859f', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-01898.DUP_6c730aca.WXS.N C3N-01898 PDA WXS blood_normal CPT0162430002 CPT0162430002.WholeExome.RP-1303.bam 40578557515 BAM aligned CPTAC3 7930cce0-4217-41b4-b16b-572942a228f6 25f17f0f0192a389864e36cdc548a9ee { 'aliquot_tag': 'DUP_6c730aca', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01898.DUP_6c730aca.WXS.N.hg38 C3N-01898 PDA WXS blood_normal CPT0162430002 c19a5631-ff53-4b04-a6ca-24781f51dc1e_wxs_gdc_realn.bam 55346006314 BAM harmonized CPTAC3 0cb73006-aa4b-4b91-8cd6-cbe7b1aec6d2 b0bb49c32a9c82a4de641163b1055ce8 { 'aliquot_tag': 'DUP_6c730aca', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-01898.DUP_b1a486fb.RNA-Seq.chimeric.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 1804daa2-1de9-4328-a7b5-cdbfab3edd5a.rna_seq.chimeric.gdc_realn.bam 141720652 BAM chimeric harmonized CPTAC3 5ed86af5-eef1-4926-8d58-3a5f678d6463 b8decf81857875518357ee6d66f202a8 { 'aliquot_tag': 'DUP_b1a486fb', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01898.DUP_b1a486fb.RNA-Seq.genomic.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 1804daa2-1de9-4328-a7b5-cdbfab3edd5a.rna_seq.genomic.gdc_realn.bam 11648415617 BAM genomic harmonized CPTAC3 42a01c85-9928-4e68-bd70-142a8d5be7ff 5c22e53c83680a2aed53b2b85982a694 { 'aliquot_tag': 'DUP_b1a486fb', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01898.DUP_b1a486fb.RNA-Seq.R1_L005.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGTACCTT-AAGACGTC_S20_L005_R1_001.fastq.gz 4388440413 FASTQ R1_L005 unaligned CPTAC3 b6230e00-8866-4a1c-8644-87ff6ab0e7a0 eec1cf3a5e102a74e36886a97a80808d { 'aliquot_tag': 'DUP_b1a486fb', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3N-01898.DUP_b1a486fb.RNA-Seq.R2_L005.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGTACCTT-AAGACGTC_S20_L005_R2_001.fastq.gz 4991190095 FASTQ R2_L005 unaligned CPTAC3 7189c36c-5a0d-417c-a6ce-596ade47f0fb 549574b34fb874ef2659daab7400a8c0 { 'aliquot_tag': 'DUP_b1a486fb', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3N-01898.DUP_b1a486fb.RNA-Seq.transcriptome.A.hg38 C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 1804daa2-1de9-4328-a7b5-cdbfab3edd5a.rna_seq.transcriptome.gdc_realn.bam 12221713256 BAM transcriptome harmonized CPTAC3 152ca52f-2d8e-416e-850e-5b263f60b6e7 21f3095383bacd4dd924be06c2f6794e { 'aliquot_tag': 'DUP_b1a486fb', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-01898.DUP_b3efcd03.WXS.T C3N-01898 PDA WXS tumor CPT0162380035 CPT0162380035.WholeExome.RP-1303.bam 39334148105 BAM aligned CPTAC3 dd300ded-f8e4-4a08-820b-17ceed338a06 21d69d0e85a6e4520c8de97d3638fed4 { 'aliquot_tag': 'DUP_b3efcd03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01898.DUP_b3efcd03.WXS.T.hg38 C3N-01898 PDA WXS tumor CPT0162380035 a04f033e-bcb2-4a8c-8318-bc7f0ab75be7_wxs_gdc_realn.bam 54248662440 BAM harmonized CPTAC3 7ac7c285-ba1c-4746-86e5-f20a05c66a93 d3999babff524e32d57081aa070db7fc { 'aliquot_tag': 'DUP_b3efcd03', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01898.DUP_c4e8fd95.WXS.T C3N-01898 PDA WXS tumor CPT0162380034 CPT0162380034.WholeExome.RP-1303.bam 28204889544 BAM aligned CPTAC3 13b6317e-cdf3-4831-b061-db183c85a2e2 e05e70af153dff9f01916d7ff691b805 { 'aliquot_tag': 'DUP_c4e8fd95', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01898.DUP_c4e8fd95.WXS.T.hg38 C3N-01898 PDA WXS tumor CPT0162380034 9ffaf767-e38d-4837-bba4-ab3e2d422e57_wxs_gdc_realn.bam 38890490285 BAM harmonized CPTAC3 c3420a31-d82b-4f1a-b441-2144141db1e8 55e58555111bc41e8a54a5b3d5a2f2bf { 'aliquot_tag': 'DUP_c4e8fd95', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3N-01898.RNA-Seq.R1_L004.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L004_R1_001.fastq.gz 3603292349 FASTQ R1_L004 unaligned CPTAC3 8ff8e21d-54cc-491e-a2e8-c7e5e50f0a08 86aac5a81dbc4a4698d9c3a0b867a095 { 'aliquot_tag': 'ALQ_6081859f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01898.RNA-Seq.R1_L005.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGTACCTT-AAGACGTC_S20_L005_R1_001.fastq.gz 4388440413 FASTQ R1_L005 unaligned CPTAC3 b6230e00-8866-4a1c-8644-87ff6ab0e7a0 eec1cf3a5e102a74e36886a97a80808d { 'aliquot_tag': 'ALQ_b1a486fb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01898.RNA-Seq.R1_L007.T C3N-01898 PDA RNA-Seq tumor CPT0162380041 220114_UNC32-K00270_0310_AHMWT5BBXY_GCACGGAC-GTCTCGCA_S23_L007_R1_001.fastq.gz 3819049850 FASTQ R1_L007 unaligned CPTAC3 bb03b0cb-df02-4f7b-b520-d3c19bd58ba5 9433c61dd6d5b14f4f00fcb75c9428c8 { 'aliquot_tag': 'ALQ_fbc39fdd', 'gdc_sample_type': 'Primary Tumor' } -C3N-01898.RNA-Seq.R2_L004.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390037 220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L004_R2_001.fastq.gz 3993881614 FASTQ R2_L004 unaligned CPTAC3 77accb30-a7ff-4041-a7b9-17f73e1a050e 5fe427ddbb709e38bcb3f718ce60cbc4 { 'aliquot_tag': 'ALQ_6081859f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01898.RNA-Seq.R2_L005.A C3N-01898 PDA RNA-Seq tissue_normal CPT0162390040 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGTACCTT-AAGACGTC_S20_L005_R2_001.fastq.gz 4991190095 FASTQ R2_L005 unaligned CPTAC3 7189c36c-5a0d-417c-a6ce-596ade47f0fb 549574b34fb874ef2659daab7400a8c0 { 'aliquot_tag': 'ALQ_b1a486fb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01898.RNA-Seq.R2_L007.T C3N-01898 PDA RNA-Seq tumor CPT0162380041 220114_UNC32-K00270_0310_AHMWT5BBXY_GCACGGAC-GTCTCGCA_S23_L007_R2_001.fastq.gz 4114846089 FASTQ R2_L007 unaligned CPTAC3 125f919b-f479-4b86-9fed-7c6be5aec2fa 375d150e748b36ad5d0e6ce37218c91c { 'aliquot_tag': 'ALQ_fbc39fdd', 'gdc_sample_type': 'Primary Tumor' } -C3N-01899.ANN_46d74460.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 67d48000-0523-41f2-ae2f-494119b38a49.rna_seq.chimeric.gdc_realn.bam 300284175 BAM chimeric harmonized CPTAC3 2acb8183-86e3-4b6c-a794-37f173b13875 252591fafd097b0d74a1d1896ee21ceb { 'aliquot_tag': 'ANN_46d74460', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01899.ANN_46d74460.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 67d48000-0523-41f2-ae2f-494119b38a49.rna_seq.genomic.gdc_realn.bam 8747808499 BAM genomic harmonized CPTAC3 b80e4b7c-62f0-47c2-b20a-8f3fe8d7268d 6aa6d58def9297179f6643eb86ae254f { 'aliquot_tag': 'ANN_46d74460', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01899.ANN_46d74460.RNA-Seq.R1_L008.T C3N-01899 PDA RNA-Seq tumor CPT0162450029 200807_UNC32-K00270_0255_AHHY2WBBXY_GTGTCGGA-GCTTGCGC_S14_L008_R1_001.fastq.gz 3734049373 FASTQ R1_L008 unaligned CPTAC3 d7b1e5cb-031f-4fbf-b7ed-351cbedff5d0 61c9b289bd2f99bb2c3cf02bf0f7e3f9 { 'aliquot_tag': 'ANN_46d74460', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01899.ANN_46d74460.RNA-Seq.R2_L008.T C3N-01899 PDA RNA-Seq tumor CPT0162450029 200807_UNC32-K00270_0255_AHHY2WBBXY_GTGTCGGA-GCTTGCGC_S14_L008_R2_001.fastq.gz 4458738039 FASTQ R2_L008 unaligned CPTAC3 d394d5b2-2762-4c60-b68d-fcfb9ea43bbf 1c2ead47fa98f1cebeb8811d1da804a0 { 'aliquot_tag': 'ANN_46d74460', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-01899.ANN_46d74460.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 67d48000-0523-41f2-ae2f-494119b38a49.rna_seq.transcriptome.gdc_realn.bam 9963635485 BAM transcriptome harmonized CPTAC3 ed8035eb-8d18-4552-bdc5-359a0f882e61 a7bce048ea97b7281011dc49365932fb { 'aliquot_tag': 'ANN_46d74460', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01898.DUP_fbc39fdd.RNA-Seq.chimeric.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380041 23b7838d-6379-4da8-960c-d7ed8fb2bc3d.rna_seq.chimeric.gdc_realn.bam 305981281 BAM chimeric harmonized CPTAC3 c161c8e7-3f0c-426f-b330-7874a9a9c5c9 2678a8e3c24a4500c6d4018a99b81aff { 'aliquot_tag': 'DUP_fbc39fdd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01898.DUP_fbc39fdd.RNA-Seq.genomic.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380041 23b7838d-6379-4da8-960c-d7ed8fb2bc3d.rna_seq.genomic.gdc_realn.bam 7873936414 BAM genomic harmonized CPTAC3 5482c003-ba9d-4641-a4c4-58a4846eecd3 835bc07a8b68cffe65d12c8cf2fb2cf5 { 'aliquot_tag': 'DUP_fbc39fdd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01898.DUP_fbc39fdd.RNA-Seq.R1_L007.T C3N-01898 PDA RNA-Seq tumor CPT0162380041 220114_UNC32-K00270_0310_AHMWT5BBXY_GCACGGAC-GTCTCGCA_S23_L007_R1_001.fastq.gz 3819049850 FASTQ R1_L007 unaligned CPTAC3 bb03b0cb-df02-4f7b-b520-d3c19bd58ba5 9433c61dd6d5b14f4f00fcb75c9428c8 { 'aliquot_tag': 'DUP_fbc39fdd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L007' } +C3N-01898.DUP_fbc39fdd.RNA-Seq.R2_L007.T C3N-01898 PDA RNA-Seq tumor CPT0162380041 220114_UNC32-K00270_0310_AHMWT5BBXY_GCACGGAC-GTCTCGCA_S23_L007_R2_001.fastq.gz 4114846089 FASTQ R2_L007 unaligned CPTAC3 125f919b-f479-4b86-9fed-7c6be5aec2fa 375d150e748b36ad5d0e6ce37218c91c { 'aliquot_tag': 'DUP_fbc39fdd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L007' } +C3N-01898.DUP_fbc39fdd.RNA-Seq.transcriptome.T.hg38 C3N-01898 PDA RNA-Seq tumor CPT0162380041 23b7838d-6379-4da8-960c-d7ed8fb2bc3d.rna_seq.transcriptome.gdc_realn.bam 10005211197 BAM transcriptome harmonized CPTAC3 29aa0317-de25-4d27-8532-b682b8fdb99f 3c7a3d3c19e8701058ba532623a731eb { 'aliquot_tag': 'DUP_fbc39fdd', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01899.ANN_46d74460.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 e171d467-9de3-4b03-ad3d-25d9a5e10a3e.rna_seq.chimeric.gdc_realn.bam 300363036 BAM chimeric harmonized CPTAC3 f86cc43c-fa8b-49a1-8aa5-be5c25ca54cd d72553738de7900286960821029efa67 { 'aliquot_tag': 'ANN_46d74460', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01899.ANN_46d74460.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 e171d467-9de3-4b03-ad3d-25d9a5e10a3e.rna_seq.genomic.gdc_realn.bam 8758527403 BAM genomic harmonized CPTAC3 10b46424-f686-4607-9e6d-fcff89e41b19 9c0a6acc882fcd6f82a02cac17edd194 { 'aliquot_tag': 'ANN_46d74460', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01899.ANN_46d74460.RNA-Seq.R1_L008.T C3N-01899 PDA RNA-Seq tumor CPT0162450029 200807_UNC32-K00270_0255_AHHY2WBBXY_GTGTCGGA-GCTTGCGC_S14_L008_R1_001.fastq.gz 3734049373 FASTQ R1_L008 unaligned CPTAC3 d7b1e5cb-031f-4fbf-b7ed-351cbedff5d0 61c9b289bd2f99bb2c3cf02bf0f7e3f9 { 'aliquot_tag': 'ANN_46d74460', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L008' } +C3N-01899.ANN_46d74460.RNA-Seq.R2_L008.T C3N-01899 PDA RNA-Seq tumor CPT0162450029 200807_UNC32-K00270_0255_AHHY2WBBXY_GTGTCGGA-GCTTGCGC_S14_L008_R2_001.fastq.gz 4458738039 FASTQ R2_L008 unaligned CPTAC3 d394d5b2-2762-4c60-b68d-fcfb9ea43bbf 1c2ead47fa98f1cebeb8811d1da804a0 { 'aliquot_tag': 'ANN_46d74460', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L008' } +C3N-01899.ANN_46d74460.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450029 e171d467-9de3-4b03-ad3d-25d9a5e10a3e.rna_seq.transcriptome.gdc_realn.bam 11330582475 BAM transcriptome harmonized CPTAC3 0a1eb73f-fbab-4c7c-8c10-cb4a3d4c65d9 1490f5b6f1c511e70ce07c21dbd61358 { 'aliquot_tag': 'ANN_46d74460', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-01899.DUP_186c0ff1.RNA-Seq.chimeric.A.hg38 C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 bf94d06f-4b15-4595-9667-8c38870b93ba.rna_seq.chimeric.gdc_realn.bam 148827313 BAM chimeric harmonized CPTAC3 f59ceef7-8343-4d0c-affb-b42abd7a13dd 875e6f9007eb7f51dc80a96286fef353 { 'aliquot_tag': 'DUP_186c0ff1', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01899.DUP_186c0ff1.RNA-Seq.genomic.A.hg38 C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 bf94d06f-4b15-4595-9667-8c38870b93ba.rna_seq.genomic.gdc_realn.bam 6631438888 BAM genomic harmonized CPTAC3 7ee77e92-fe31-4756-8c22-c8674a78adb6 aeb62b88458f9e7604410b26e33f2c4b { 'aliquot_tag': 'DUP_186c0ff1', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01899.DUP_186c0ff1.RNA-Seq.R1_L005.A C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCAGAATT-ACCGGCCA_S19_L005_R1_001.fastq.gz 3244064181 FASTQ R1_L005 unaligned CPTAC3 f8a107fa-2560-4f3b-9b30-082ccbb5d73f 0e8a32736f161c444f7cd3b3e0e29da2 { 'aliquot_tag': 'DUP_186c0ff1', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3N-01899.DUP_186c0ff1.RNA-Seq.R2_L005.A C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCAGAATT-ACCGGCCA_S19_L005_R2_001.fastq.gz 3508298852 FASTQ R2_L005 unaligned CPTAC3 674546be-2b9e-4bbf-ace0-318d7d6b1ff7 78e4e91a34ffc8484ac745a1656a7237 { 'aliquot_tag': 'DUP_186c0ff1', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3N-01899.DUP_186c0ff1.RNA-Seq.transcriptome.A.hg38 C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 bf94d06f-4b15-4595-9667-8c38870b93ba.rna_seq.transcriptome.gdc_realn.bam 8655136604 BAM transcriptome harmonized CPTAC3 b4bf2bae-7c45-4e79-ac13-8d9c18bd82bd 768ba96f565ff634f96ddcc6aa848f23 { 'aliquot_tag': 'DUP_186c0ff1', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01899.DUP_1e566bd4.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450041 5cd0492e-f8e7-4cb5-8176-c344203dc887.rna_seq.chimeric.gdc_realn.bam 349050446 BAM chimeric harmonized CPTAC3 d5d2444e-4687-428f-90fc-233f7157c274 99eccf84af5f7b6cff112161bf71b6dc { 'aliquot_tag': 'DUP_1e566bd4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01899.DUP_1e566bd4.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450041 5cd0492e-f8e7-4cb5-8176-c344203dc887.rna_seq.genomic.gdc_realn.bam 7716956261 BAM genomic harmonized CPTAC3 c982688b-458a-4658-b6d3-19363ba32877 e836374091503ef04a1e75d0ad384329 { 'aliquot_tag': 'DUP_1e566bd4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01899.DUP_1e566bd4.RNA-Seq.R1_L004.T C3N-01899 PDA RNA-Seq tumor CPT0162450041 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L004_R1_001.fastq.gz 3667226686 FASTQ R1_L004 unaligned CPTAC3 f0d15fc4-e90e-40f1-95be-34300afdbd25 83040d638708313c96180cc6f804428e { 'aliquot_tag': 'DUP_1e566bd4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L004' } +C3N-01899.DUP_1e566bd4.RNA-Seq.R2_L004.T C3N-01899 PDA RNA-Seq tumor CPT0162450041 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L004_R2_001.fastq.gz 3832205652 FASTQ R2_L004 unaligned CPTAC3 ab7f2e71-93c5-4947-9286-05994fae65aa fdbbc4669a63d96cc6b83dc52dddfc9c { 'aliquot_tag': 'DUP_1e566bd4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L004' } +C3N-01899.DUP_1e566bd4.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450041 5cd0492e-f8e7-4cb5-8176-c344203dc887.rna_seq.transcriptome.gdc_realn.bam 9753290342 BAM transcriptome harmonized CPTAC3 cdada004-3728-440c-8c25-0640eee368a1 8c29125abff587f66a0efd6796378e7a { 'aliquot_tag': 'DUP_1e566bd4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-01899.DUP_217d099c.WXS.T C3N-01899 PDA WXS tumor CPT0162450034 CPT0162450034.WholeExome.RP-1303.bam 21688029245 BAM aligned CPTAC3 6f2e5eb8-8b64-4d26-8834-7ae506f36a38 1ae47bf1ed6dbb2abb4d4b74a32a0515 { 'aliquot_tag': 'DUP_217d099c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01899.DUP_217d099c.WXS.T.hg38 C3N-01899 PDA WXS tumor CPT0162450034 c2bc2e43-e735-4a74-a78a-5ad7f9dfb4ce_wxs_gdc_realn.bam 29949678812 BAM harmonized CPTAC3 96ed209d-ca09-4aed-b304-99ebdfdfae70 f0e88708f27c889d5583db3a91c7d89f { 'aliquot_tag': 'DUP_217d099c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01899.DUP_567a390a.WXS.T C3N-01899 PDA WXS tumor CPT0162450035 CPT0162450035.WholeExome.RP-1303.bam 31073047341 BAM aligned CPTAC3 4c4d7191-9aaa-4bc2-8738-95f3e6fa3550 425a1658738054a5979f1e2c39cf9582 { 'aliquot_tag': 'DUP_567a390a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01899.DUP_567a390a.WXS.T.hg38 C3N-01899 PDA WXS tumor CPT0162450035 8e055081-713b-4196-932a-2ee5a04db44e_wxs_gdc_realn.bam 42880039006 BAM harmonized CPTAC3 a8e3fd14-80f3-4fe4-b53b-1128d6131340 f4b3aed1b4f89aa9dbb8ac01cf4f10a7 { 'aliquot_tag': 'DUP_567a390a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-01899.DUP_6e3c9f5b.RNA-Seq.chimeric.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450044 3c7b23f1-0cbd-467b-a897-7fd095f96d05.rna_seq.chimeric.gdc_realn.bam 424178710 BAM chimeric harmonized CPTAC3 e27bf4ae-d6d8-4151-b000-a638c33c53b4 f895bd669ad3f5cc3a6eb212e53b1178 { 'aliquot_tag': 'DUP_6e3c9f5b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01899.DUP_6e3c9f5b.RNA-Seq.genomic.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450044 3c7b23f1-0cbd-467b-a897-7fd095f96d05.rna_seq.genomic.gdc_realn.bam 9095675614 BAM genomic harmonized CPTAC3 66afcd3b-76a3-4a5b-9122-818ee6c60983 5445223f59abfd22396fc5c2289d4dcb { 'aliquot_tag': 'DUP_6e3c9f5b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-01899.DUP_6e3c9f5b.RNA-Seq.R1_L005.T C3N-01899 PDA RNA-Seq tumor CPT0162450044 220126_UNC32-K00270_0314_AHMVJ7BBXY_AACGTTCC-GGAGTACT_S17_L005_R1_001.fastq.gz 3684643460 FASTQ R1_L005 unaligned CPTAC3 2cbcaabc-587b-4fc1-9deb-27104406fc9a f2cf3e28b81e254cc24d249d4cf61ea7 { 'aliquot_tag': 'DUP_6e3c9f5b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3N-01899.DUP_6e3c9f5b.RNA-Seq.R2_L005.T C3N-01899 PDA RNA-Seq tumor CPT0162450044 220126_UNC32-K00270_0314_AHMVJ7BBXY_AACGTTCC-GGAGTACT_S17_L005_R2_001.fastq.gz 3987289186 FASTQ R2_L005 unaligned CPTAC3 768fb307-e987-4073-9ad0-b027904a6892 b00094f7e19e423a77c5586f9d00198e { 'aliquot_tag': 'DUP_6e3c9f5b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3N-01899.DUP_6e3c9f5b.RNA-Seq.transcriptome.T.hg38 C3N-01899 PDA RNA-Seq tumor CPT0162450044 3c7b23f1-0cbd-467b-a897-7fd095f96d05.rna_seq.transcriptome.gdc_realn.bam 9865725796 BAM transcriptome harmonized CPTAC3 3329c79d-e944-4b4e-850e-009f08274e50 0f815709aea30ce1db06a7faae08079c { 'aliquot_tag': 'DUP_6e3c9f5b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-01899.DUP_cf7368b0.WXS.T C3N-01899 PDA WXS tumor CPT0162450036 CPT0162450036.WholeExome.RP-1303.bam 26720318771 BAM aligned CPTAC3 19074838-d206-4af4-bfe1-1b875e0eaca7 e4f3fd08d4c86fa2a7161b6685027de4 { 'aliquot_tag': 'DUP_cf7368b0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01899.DUP_cf7368b0.WXS.T.hg38 C3N-01899 PDA WXS tumor CPT0162450036 367fe4ff-5a2e-4cb8-acd4-777fe8b3499d_wxs_gdc_realn.bam 37666160591 BAM harmonized CPTAC3 38fb1142-7649-4b70-a4cd-b4ac272297c7 ea9afb96aefb52eecf33e7aa860e0edd { 'aliquot_tag': 'DUP_cf7368b0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01899.DUP_e08fa3bf.WXS.N C3N-01899 PDA WXS blood_normal CPT0162500002 CPT0162500002.WholeExome.RP-1303.bam 25576856902 BAM aligned CPTAC3 14b6816a-4b7d-4b6a-ae83-e7fe6af167df 79f16f28f0f0cfd5cf73e0e583b6c065 { 'aliquot_tag': 'DUP_e08fa3bf', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-01899.DUP_e08fa3bf.WXS.N.hg38 C3N-01899 PDA WXS blood_normal CPT0162500002 d0c12dcc-5016-4c9d-bc4c-70283f9ae2c7_wxs_gdc_realn.bam 34693543392 BAM harmonized CPTAC3 8897643b-c9fd-41bc-be7a-adc6ebc44a0a 925d14e9a77b7f172ef7b036b22c18e6 { 'aliquot_tag': 'DUP_e08fa3bf', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3N-01899.RNA-Seq.R1_L004.T C3N-01899 PDA RNA-Seq tumor CPT0162450041 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L004_R1_001.fastq.gz 3667226686 FASTQ R1_L004 unaligned CPTAC3 f0d15fc4-e90e-40f1-95be-34300afdbd25 83040d638708313c96180cc6f804428e { 'aliquot_tag': 'ALQ_1e566bd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01899.RNA-Seq.R1_L005.A C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCAGAATT-ACCGGCCA_S19_L005_R1_001.fastq.gz 3244064181 FASTQ R1_L005 unaligned CPTAC3 f8a107fa-2560-4f3b-9b30-082ccbb5d73f 0e8a32736f161c444f7cd3b3e0e29da2 { 'aliquot_tag': 'ALQ_186c0ff1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01899.RNA-Seq.R1_L005.T C3N-01899 PDA RNA-Seq tumor CPT0162450044 220126_UNC32-K00270_0314_AHMVJ7BBXY_AACGTTCC-GGAGTACT_S17_L005_R1_001.fastq.gz 3684643460 FASTQ R1_L005 unaligned CPTAC3 2cbcaabc-587b-4fc1-9deb-27104406fc9a f2cf3e28b81e254cc24d249d4cf61ea7 { 'aliquot_tag': 'ALQ_6e3c9f5b', 'gdc_sample_type': 'Primary Tumor' } -C3N-01899.RNA-Seq.R2_L004.T C3N-01899 PDA RNA-Seq tumor CPT0162450041 220114_UNC32-K00270_0310_AHMWT5BBXY_AAGTCCAA-TATGAGTA_S1_L004_R2_001.fastq.gz 3832205652 FASTQ R2_L004 unaligned CPTAC3 ab7f2e71-93c5-4947-9286-05994fae65aa fdbbc4669a63d96cc6b83dc52dddfc9c { 'aliquot_tag': 'ALQ_1e566bd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-01899.RNA-Seq.R2_L005.A C3N-01899 PDA RNA-Seq tissue_normal CPT0162460039 220126_UNC32-K00270_0314_AHMVJ7BBXY_GCAGAATT-ACCGGCCA_S19_L005_R2_001.fastq.gz 3508298852 FASTQ R2_L005 unaligned CPTAC3 674546be-2b9e-4bbf-ace0-318d7d6b1ff7 78e4e91a34ffc8484ac745a1656a7237 { 'aliquot_tag': 'ALQ_186c0ff1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01899.RNA-Seq.R2_L005.T C3N-01899 PDA RNA-Seq tumor CPT0162450044 220126_UNC32-K00270_0314_AHMVJ7BBXY_AACGTTCC-GGAGTACT_S17_L005_R2_001.fastq.gz 3987289186 FASTQ R2_L005 unaligned CPTAC3 768fb307-e987-4073-9ad0-b027904a6892 b00094f7e19e423a77c5586f9d00198e { 'aliquot_tag': 'ALQ_6e3c9f5b', 'gdc_sample_type': 'Primary Tumor' } C3N-01900.MethArray.Green.T C3N-01900 PDA Methylation Array tumor CPT0162600008 203561450102_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 ec22480d-960c-450f-baec-b3dded6df11e 09b4fb5fe64e9ad2e57a41fe8276cba7 { 'aliquot_tag': 'ALQ_86ce380f', 'gdc_sample_type': 'Primary Tumor' } C3N-01900.MethArray.Red.T C3N-01900 PDA Methylation Array tumor CPT0162600008 203561450102_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 c23e280e-05d6-4622-bf1d-e81bd5d26b1d 1c71e1893f19bd15410a324ed0112c8e { 'aliquot_tag': 'ALQ_86ce380f', 'gdc_sample_type': 'Primary Tumor' } C3N-01900.miRNA-Seq.T C3N-01900 PDA miRNA-Seq tumor CPT0162600011 190712_UNC32-K00270_0192_BH7HL3BBXY_ACTGAT_S1_L004_R1_001.unaln.bam 255444431 BAM unaligned CPTAC3 4052e1de-db18-4cb2-92a5-ba03ae107ca1 d91c572808973e9bcea5336e1e3c5390 { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor' } C3N-01900.miRNA-Seq.T.hg38 C3N-01900 PDA miRNA-Seq tumor CPT0162600011 5b89d8c0-d217-4877-8462-371e7444a63b_mirnaseq_gdc_realn.bam 291362867 BAM harmonized CPTAC3 d1f04ef1-4d47-41d1-be33-2ff045e98292 508addf9ee7f8200b22c6ebdbac09105 { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01900.RNA-Seq.chimeric.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 99ac380d-73eb-41cf-ab1c-e0ed4c95eb77.rna_seq.chimeric.gdc_realn.bam 32710382 BAM chimeric harmonized CPTAC3 b53c77a0-3ae4-4df7-b0f7-4a3d868333a4 7b6abb586316b3c5f08e5d14fb2ef1d7 { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01900.RNA-Seq.genomic.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 99ac380d-73eb-41cf-ab1c-e0ed4c95eb77.rna_seq.genomic.gdc_realn.bam 8024048436 BAM genomic harmonized CPTAC3 a5706fa6-a92b-40d2-a2bf-b47844381471 660bb65f6d50eba9662f5c8e3892086f { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01900.RNA-Seq.R1_L003.T C3N-01900 PDA RNA-Seq tumor CPT0162600011 190621_UNC32-K00270_0185_BH7G72BBXY_CAATTAAC-CGAGATAT_S11_L003_R1_001.fastq.gz 3903330593 FASTQ R1_L003 unaligned CPTAC3 eb3070e5-30fc-4105-bf8f-05f278a1bd7c e46b1dcc552274f6d846b1ed8b502f8d { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01900.RNA-Seq.R2_L003.T C3N-01900 PDA RNA-Seq tumor CPT0162600011 190621_UNC32-K00270_0185_BH7G72BBXY_CAATTAAC-CGAGATAT_S11_L003_R2_001.fastq.gz 4027328450 FASTQ R2_L003 unaligned CPTAC3 8c2f2b11-752e-4bdf-b0c0-facfe7ddf8b6 2207c692103b32c4c0a442e632a691aa { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01900.RNA-Seq.transcriptome.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 99ac380d-73eb-41cf-ab1c-e0ed4c95eb77.rna_seq.transcriptome.gdc_realn.bam 8681127531 BAM transcriptome harmonized CPTAC3 f601dbc0-981b-4940-b591-e130e7a3f3ba ed3bb26ccd413dfcc6c045fda0a210c8 { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor' } +C3N-01900.RNA-Seq.chimeric.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 bc54c1cc-0c51-4612-85f5-c7d69699e94c.rna_seq.chimeric.gdc_realn.bam 32688359 BAM chimeric harmonized CPTAC3 27ec9a8a-d1fa-46d3-9da2-3194cd27e52c e687e3874734986a04c6cae05de303b4 { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor' } +C3N-01900.RNA-Seq.genomic.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 bc54c1cc-0c51-4612-85f5-c7d69699e94c.rna_seq.genomic.gdc_realn.bam 8025300788 BAM genomic harmonized CPTAC3 3823ef8a-b33b-45af-a87c-61dbddcf95a9 7bfe3cc51ef4a2ef5722ce55b7eca1c0 { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor' } +C3N-01900.RNA-Seq.R1_L003.T C3N-01900 PDA RNA-Seq tumor CPT0162600011 190621_UNC32-K00270_0185_BH7G72BBXY_CAATTAAC-CGAGATAT_S11_L003_R1_001.fastq.gz 3903330593 FASTQ R1_L003 unaligned CPTAC3 eb3070e5-30fc-4105-bf8f-05f278a1bd7c e46b1dcc552274f6d846b1ed8b502f8d { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-01900.RNA-Seq.R2_L003.T C3N-01900 PDA RNA-Seq tumor CPT0162600011 190621_UNC32-K00270_0185_BH7G72BBXY_CAATTAAC-CGAGATAT_S11_L003_R2_001.fastq.gz 4027328450 FASTQ R2_L003 unaligned CPTAC3 8c2f2b11-752e-4bdf-b0c0-facfe7ddf8b6 2207c692103b32c4c0a442e632a691aa { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-01900.RNA-Seq.transcriptome.T.hg38 C3N-01900 PDA RNA-Seq tumor CPT0162600011 bc54c1cc-0c51-4612-85f5-c7d69699e94c.rna_seq.transcriptome.gdc_realn.bam 9861392087 BAM transcriptome harmonized CPTAC3 7c2c9947-8d9a-4e40-a593-50556c15c26c 63b3e67d8c506f7ed16e254bee0e6de5 { 'aliquot_tag': 'ALQ_e609b1ea', 'gdc_sample_type': 'Primary Tumor' } C3N-01900.WGS.N C3N-01900 PDA WGS blood_normal CPT0162650002 CPT0162650002.WholeGenome.RP-1303.bam 82132845318 BAM aligned CPTAC3 003f14a5-61fb-47c6-b265-cd9c5972bc28 606a3edd0688bf296cbc1f669293e0cf { 'aliquot_tag': 'ALQ_aefb5e61', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01900.WGS.N.hg38 C3N-01900 PDA WGS blood_normal CPT0162650002 0dfe243e-8f6a-4b2d-8673-47e054f8ee47_wgs_gdc_realn.bam 119788131076 BAM harmonized CPTAC3 f14d8add-124c-416b-a15b-cecb1eaba671 786348a2336066485009603c815a4fbd { 'aliquot_tag': 'ALQ_aefb5e61', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01900.WGS.T C3N-01900 PDA WGS tumor CPT0162600008 CPT0162600008.WholeGenome.RP-1303.bam 108001796768 BAM aligned CPTAC3 91e76fca-0e81-462d-9e48-1c90c7e2c041 da5f31cef2962c553a293cca8eb6ce5a { 'aliquot_tag': 'ALQ_86ce380f', 'gdc_sample_type': 'Primary Tumor' } @@ -28222,16 +30278,16 @@ C3N-01902.miRNA-Seq.A C3N-01902 CCRCC miRNA-Seq tissue_normal CPT0181270009 1901 C3N-01902.miRNA-Seq.A.hg38 C3N-01902 CCRCC miRNA-Seq tissue_normal CPT0181270009 263b4bbd-079f-4441-b260-18986ed58a65_mirnaseq_gdc_realn.bam 276410420 BAM harmonized CPTAC3 20df0565-0fc5-40f0-a423-13cad35039d4 cfa75dc8935bea0de533f69866a84adc { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01902.miRNA-Seq.T C3N-01902 CCRCC miRNA-Seq tumor CPT0181260008 190130_UNC31-K00269_0188_BH2FGCBBXY_TCATTC_S45_L005_R1_001.unaln.bam 213804109 BAM unaligned CPTAC3 89238f3c-fc90-4f25-b984-03474ac49ca9 246c862cddc1b42765e932886c78c7b5 { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor' } C3N-01902.miRNA-Seq.T.hg38 C3N-01902 CCRCC miRNA-Seq tumor CPT0181260008 8891103b-753c-431d-87b7-0220040a31f9_mirnaseq_gdc_realn.bam 239779553 BAM harmonized CPTAC3 dc6e0568-689d-401a-9173-09cf08bcc18d 22668b5d11443ea20b376a74f337a6ca { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor' } -C3N-01902.RNA-Seq.chimeric.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 3478fec9-102e-41ae-b8c6-171586ba74c6.rna_seq.chimeric.gdc_realn.bam 29434218 BAM chimeric harmonized CPTAC3 f53689b9-ec1f-4a6b-bbfc-59c4fefaed11 2c5c5eab2d15195fa1f19d27d27c6176 { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01902.RNA-Seq.chimeric.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 e80305f9-5fc5-4f06-a8cb-5bcd3c1a67e4.rna_seq.chimeric.gdc_realn.bam 39139660 BAM chimeric harmonized CPTAC3 45ae5d0d-6480-4a84-b26e-bde302b0441e ee8e1ba53ee13e321aa40e19b3317a7b { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor' } -C3N-01902.RNA-Seq.genomic.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 3478fec9-102e-41ae-b8c6-171586ba74c6.rna_seq.genomic.gdc_realn.bam 7769983287 BAM genomic harmonized CPTAC3 409ae537-68cd-4d2a-9c95-1de840be70c0 25aff1badd60040a3e6473a7e8599d80 { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01902.RNA-Seq.genomic.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 e80305f9-5fc5-4f06-a8cb-5bcd3c1a67e4.rna_seq.genomic.gdc_realn.bam 8064410697 BAM genomic harmonized CPTAC3 9de415dd-9c6f-4f5a-aac8-88d105ebc94f 2eae90ed8312aac290e11dd7f622ffc1 { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor' } -C3N-01902.RNA-Seq.R1_L002.A C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L002_R1_001.fastq.gz 3646283706 FASTQ R1_L002 unaligned CPTAC3 9892b3ac-a2cd-4199-a0bc-7c1e9fc0a1d9 3222ec5c28a405def937eefe964cb415 { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01902.RNA-Seq.R1_L002.T C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L002_R1_001.fastq.gz 3778794556 FASTQ R1_L002 unaligned CPTAC3 887a0ad3-d1e7-4d10-af01-e5918562f524 f819513946e0a539baae6a70c9fc56ce { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor' } -C3N-01902.RNA-Seq.R2_L002.A C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L002_R2_001.fastq.gz 3901216772 FASTQ R2_L002 unaligned CPTAC3 69d98970-62de-4d6d-b8bc-3b522702970d b6c43035ba488314f19c7dd0e5aea0cb { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01902.RNA-Seq.R2_L002.T C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L002_R2_001.fastq.gz 4109566650 FASTQ R2_L002 unaligned CPTAC3 86aec419-ac8b-492c-af9a-092baeaab6eb ddf1448d8409f79ee89881b16affe04c { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor' } -C3N-01902.RNA-Seq.transcriptome.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 3478fec9-102e-41ae-b8c6-171586ba74c6.rna_seq.transcriptome.gdc_realn.bam 8844887401 BAM transcriptome harmonized CPTAC3 c3577ab3-d154-4d72-81f4-142749d6a314 128bc01391b1a259bb470f53e06cab72 { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01902.RNA-Seq.transcriptome.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 e80305f9-5fc5-4f06-a8cb-5bcd3c1a67e4.rna_seq.transcriptome.gdc_realn.bam 8390975573 BAM transcriptome harmonized CPTAC3 e204f2de-64fa-4241-82d1-7aea07f40f09 30b9398418ef889d65c9e129595a5d17 { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor' } +C3N-01902.RNA-Seq.chimeric.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 85c191d3-88e5-44b9-940e-e75b4f80a18c.rna_seq.chimeric.gdc_realn.bam 29423841 BAM chimeric harmonized CPTAC3 d0985b4c-371b-4ffc-9538-28c156e3d67e 2eafb23b193f35652323e2f781c992c1 { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01902.RNA-Seq.chimeric.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 4034f1e6-82b9-434a-836f-c93b6e2433d0.rna_seq.chimeric.gdc_realn.bam 39117872 BAM chimeric harmonized CPTAC3 d4afbe92-ea71-41ca-9386-32133a4edaf4 03ae49867e54fc4a9c0ef4f5c298641d { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor' } +C3N-01902.RNA-Seq.genomic.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 85c191d3-88e5-44b9-940e-e75b4f80a18c.rna_seq.genomic.gdc_realn.bam 7770817615 BAM genomic harmonized CPTAC3 5aa07644-8f46-47f6-99ec-e162445d1bfc af6ad2e069b91e88efb5c9948dac1011 { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01902.RNA-Seq.genomic.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 4034f1e6-82b9-434a-836f-c93b6e2433d0.rna_seq.genomic.gdc_realn.bam 8065592386 BAM genomic harmonized CPTAC3 483d8869-efb6-4d6f-bd9a-bb3a93e8e581 fd43c35758c4e1486be1fdae4d681777 { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor' } +C3N-01902.RNA-Seq.R1_L002.A C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L002_R1_001.fastq.gz 3646283706 FASTQ R1_L002 unaligned CPTAC3 9892b3ac-a2cd-4199-a0bc-7c1e9fc0a1d9 3222ec5c28a405def937eefe964cb415 { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-01902.RNA-Seq.R1_L002.T C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L002_R1_001.fastq.gz 3778794556 FASTQ R1_L002 unaligned CPTAC3 887a0ad3-d1e7-4d10-af01-e5918562f524 f819513946e0a539baae6a70c9fc56ce { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-01902.RNA-Seq.R2_L002.A C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L002_R2_001.fastq.gz 3901216772 FASTQ R2_L002 unaligned CPTAC3 69d98970-62de-4d6d-b8bc-3b522702970d b6c43035ba488314f19c7dd0e5aea0cb { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-01902.RNA-Seq.R2_L002.T C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 190125_UNC31-K00269_0184_AH3M32BBXY_CGTACG_S5_L002_R2_001.fastq.gz 4109566650 FASTQ R2_L002 unaligned CPTAC3 86aec419-ac8b-492c-af9a-092baeaab6eb ddf1448d8409f79ee89881b16affe04c { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-01902.RNA-Seq.transcriptome.A.hg38 C3N-01902 CCRCC RNA-Seq tissue_normal CPT0181270009 85c191d3-88e5-44b9-940e-e75b4f80a18c.rna_seq.transcriptome.gdc_realn.bam 10154293207 BAM transcriptome harmonized CPTAC3 5d842637-548b-4c3c-8aa2-a0365f98271e c8baae483ec083154a630605d35253a7 { 'aliquot_tag': 'ALQ_fc1a9e30', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01902.RNA-Seq.transcriptome.T.hg38 C3N-01902 CCRCC RNA-Seq tumor CPT0181260008 4034f1e6-82b9-434a-836f-c93b6e2433d0.rna_seq.transcriptome.gdc_realn.bam 9595301513 BAM transcriptome harmonized CPTAC3 e97aff21-2ecd-4c39-b4b6-7d2d2dd28aae 54f9884c91cb12ab768efdff7ddca7b0 { 'aliquot_tag': 'ALQ_b67d8716', 'gdc_sample_type': 'Primary Tumor' } C3N-01902.WGS.A C3N-01902 CCRCC WGS tissue_normal CPT0181270006 CPT0181270006.WholeGenome.RP-1303.bam 58202752135 BAM aligned CPTAC3 76fe685b-5659-4723-be68-a13b169ac50b 13c1b208a0b5c168e91beb5f0a67ace1 { 'aliquot_tag': 'ALQ_6ca583a1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01902.WGS.A.hg38 C3N-01902 CCRCC WGS tissue_normal CPT0181270006 f4ffaada-ca69-4f50-9584-5cd222daf5ec_wgs_gdc_realn.bam 86052733025 BAM harmonized CPTAC3 1c59084d-55d6-47a0-8c4c-9fb76be5fb44 178c9f89d4ff06a12a9527a524a903b7 { 'aliquot_tag': 'ALQ_6ca583a1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01902.WGS.N C3N-01902 CCRCC WGS blood_normal CPT0181310002 CPT0181310002.WholeGenome.RP-1303.bam 74611143802 BAM aligned CPTAC3 2779ca34-edad-4db5-bcc8-735df55188ee 31589706343ac4433e2a0d8b3249c0b9 { 'aliquot_tag': 'ALQ_2fd461bd', 'gdc_sample_type': 'Blood Derived Normal' } @@ -28252,16 +30308,16 @@ C3N-01903.miRNA-Seq.A C3N-01903 CCRCC miRNA-Seq tissue_normal CPT0381210006 2101 C3N-01903.miRNA-Seq.A.hg38 C3N-01903 CCRCC miRNA-Seq tissue_normal CPT0381210006 21a2e731-9df8-49b6-8c5b-f116aea4341e_mirnaseq_gdc_realn.bam 236490280 BAM harmonized CPTAC3 62f9a603-1dc5-4590-9baa-1db7c1752b97 7af95e955f5a056fa824d15714723875 { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01903.miRNA-Seq.T C3N-01903 CCRCC miRNA-Seq tumor CPT0381170006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GGCTAC_S13_L001_R1_001.unaln.bam 257535238 BAM unaligned CPTAC3 71e4f953-7363-4736-94cb-23f698a28960 751090d749aa666314a525c3796f95c2 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor' } C3N-01903.miRNA-Seq.T.hg38 C3N-01903 CCRCC miRNA-Seq tumor CPT0381170006 10b87552-ab75-4c0b-979a-92c7b69fdb37_mirnaseq_gdc_realn.bam 278997628 BAM harmonized CPTAC3 c621eceb-6ae1-42db-bbd4-7621b18ed2f6 4ff2b62bb0b4ef5cab95bc7ed47a9dce { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor' } -C3N-01903.RNA-Seq.chimeric.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 78e20a56-af86-4ae6-984d-43bdc73e504d.rna_seq.chimeric.gdc_realn.bam 374958642 BAM chimeric harmonized CPTAC3 c9e4c2bc-48f3-42f0-8632-2ce6f5d5415e a5536b3800d15cab622f7c8fa4051706 { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01903.RNA-Seq.chimeric.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 0d4074bc-e4cf-48c1-8b8a-f960bf7fb1d3.rna_seq.chimeric.gdc_realn.bam 531670465 BAM chimeric harmonized CPTAC3 9369c4fc-5c4e-49a2-a233-9fd022581195 ef94bfec4a3330dd156e57820a69b1f6 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor' } -C3N-01903.RNA-Seq.genomic.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 78e20a56-af86-4ae6-984d-43bdc73e504d.rna_seq.genomic.gdc_realn.bam 8048954507 BAM genomic harmonized CPTAC3 cfebaae1-f2dc-40b9-9409-3deae6d50a5b d91ea95d7bac0153025cf019a7260e47 { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01903.RNA-Seq.genomic.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 0d4074bc-e4cf-48c1-8b8a-f960bf7fb1d3.rna_seq.genomic.gdc_realn.bam 6795526111 BAM genomic harmonized CPTAC3 8e46497d-0e48-46b9-88d4-2c38b803061f 0b56c5d40a5f990ac73bd7dd43392bc0 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor' } -C3N-01903.RNA-Seq.R1_L007.A C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 210105_UNC32-K00270_0269_BHKN5MBBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 3691858569 FASTQ R1_L007 unaligned CPTAC3 8e1d1cdd-0843-4867-8ae0-8248dc85b781 88127249f956bb327887da0c24932e2b { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01903.RNA-Seq.R1_L007.T C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 210105_UNC32-K00270_0269_BHKN5MBBXY_TCTCTACT-CGCGGTTC_S28_L007_R1_001.fastq.gz 3320059496 FASTQ R1_L007 unaligned CPTAC3 6399214e-9dc2-4f85-89a4-f3f3cae17fd2 155e88232052a0d15a63d28ee1dc9d66 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor' } -C3N-01903.RNA-Seq.R2_L007.A C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 210105_UNC32-K00270_0269_BHKN5MBBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4203141537 FASTQ R2_L007 unaligned CPTAC3 bd3d8b0e-35f5-4457-8999-f11961ff7810 ccc533b9f433230053a8811a33b91dbc { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01903.RNA-Seq.R2_L007.T C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 210105_UNC32-K00270_0269_BHKN5MBBXY_TCTCTACT-CGCGGTTC_S28_L007_R2_001.fastq.gz 3762030728 FASTQ R2_L007 unaligned CPTAC3 00ad6df2-e0f2-45ad-8e68-17e9e2127bcb 04cfc354684c0723f84fade96f2a7b22 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor' } -C3N-01903.RNA-Seq.transcriptome.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 78e20a56-af86-4ae6-984d-43bdc73e504d.rna_seq.transcriptome.gdc_realn.bam 7756866974 BAM transcriptome harmonized CPTAC3 95ff8d26-4096-4fcd-9592-ac1c62d48b3d a906bb4ef3fc39ae6b6e40c09610654a { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01903.RNA-Seq.transcriptome.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 0d4074bc-e4cf-48c1-8b8a-f960bf7fb1d3.rna_seq.transcriptome.gdc_realn.bam 7090085032 BAM transcriptome harmonized CPTAC3 2e99e840-6152-4ec8-80da-84ac3b21c805 b3006fb027f699e3aeadbdd9351f3179 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor' } +C3N-01903.RNA-Seq.chimeric.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 fbf9c486-7393-4240-b721-b6202331671f.rna_seq.chimeric.gdc_realn.bam 374996677 BAM chimeric harmonized CPTAC3 2226c13c-7844-41cb-a128-18e3928e69f5 b21fa4664a1f871f3af297b9ec5b0b65 { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01903.RNA-Seq.chimeric.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 d071e68e-ad16-4be2-9485-b6a96f7a7a13.rna_seq.chimeric.gdc_realn.bam 531840480 BAM chimeric harmonized CPTAC3 620e23c1-0a69-417e-bfc3-58118ff58f68 fb1718e640087519392277d6af75fc66 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor' } +C3N-01903.RNA-Seq.genomic.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 fbf9c486-7393-4240-b721-b6202331671f.rna_seq.genomic.gdc_realn.bam 8055113250 BAM genomic harmonized CPTAC3 0dd45bfa-2417-4f4f-8bc7-8f93b9606ecc d786215a9b6050b0c4aa86c1a3836f39 { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01903.RNA-Seq.genomic.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 d071e68e-ad16-4be2-9485-b6a96f7a7a13.rna_seq.genomic.gdc_realn.bam 6799806623 BAM genomic harmonized CPTAC3 66d815d6-a4c7-4b7d-91a8-f3b828a91de0 b4862c6d45b147f180facc9570f9abd7 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor' } +C3N-01903.RNA-Seq.R1_L007.A C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 210105_UNC32-K00270_0269_BHKN5MBBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 3691858569 FASTQ R1_L007 unaligned CPTAC3 8e1d1cdd-0843-4867-8ae0-8248dc85b781 88127249f956bb327887da0c24932e2b { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-01903.RNA-Seq.R1_L007.T C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 210105_UNC32-K00270_0269_BHKN5MBBXY_TCTCTACT-CGCGGTTC_S28_L007_R1_001.fastq.gz 3320059496 FASTQ R1_L007 unaligned CPTAC3 6399214e-9dc2-4f85-89a4-f3f3cae17fd2 155e88232052a0d15a63d28ee1dc9d66 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01903.RNA-Seq.R2_L007.A C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 210105_UNC32-K00270_0269_BHKN5MBBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4203141537 FASTQ R2_L007 unaligned CPTAC3 bd3d8b0e-35f5-4457-8999-f11961ff7810 ccc533b9f433230053a8811a33b91dbc { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-01903.RNA-Seq.R2_L007.T C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 210105_UNC32-K00270_0269_BHKN5MBBXY_TCTCTACT-CGCGGTTC_S28_L007_R2_001.fastq.gz 3762030728 FASTQ R2_L007 unaligned CPTAC3 00ad6df2-e0f2-45ad-8e68-17e9e2127bcb 04cfc354684c0723f84fade96f2a7b22 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01903.RNA-Seq.transcriptome.A.hg38 C3N-01903 CCRCC RNA-Seq tissue_normal CPT0381210006 fbf9c486-7393-4240-b721-b6202331671f.rna_seq.transcriptome.gdc_realn.bam 8903177987 BAM transcriptome harmonized CPTAC3 9761a8b6-f2e6-46ad-92e7-9d8dc292f0fe e0a195d4638bc0f97ea9dd96ebf18ce8 { 'aliquot_tag': 'ALQ_cd135e87', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01903.RNA-Seq.transcriptome.T.hg38 C3N-01903 CCRCC RNA-Seq tumor CPT0381170006 d071e68e-ad16-4be2-9485-b6a96f7a7a13.rna_seq.transcriptome.gdc_realn.bam 8092691284 BAM transcriptome harmonized CPTAC3 6dd395c8-0a6c-4e93-bdde-c98dfa385daf 60bf00efc8c3a5baae6e4315b2098694 { 'aliquot_tag': 'ALQ_c4c7d989', 'gdc_sample_type': 'Primary Tumor' } C3N-01903.WGS.N C3N-01903 CCRCC WGS blood_normal CPT0381410002 CPT0381410002.WholeGenome.RP-2158.bam 41368914785 BAM aligned CPTAC3 e67b77e0-eeca-4622-9b1c-0722d91eb5fc dd9cde9ea707e77374c56c00c74f202f { 'aliquot_tag': 'ALQ_1c277983', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01903.WGS.N.hg38 C3N-01903 CCRCC WGS blood_normal CPT0381410002 969cdc8d-c366-4ccf-ae04-d3fd3478beb3_wgs_gdc_realn.bam 127001104942 BAM harmonized CPTAC3 81123d82-e2e4-4d41-a0a4-c3de7a4f4cf5 1b845500898bb64ca9bf77222332ff55 { 'aliquot_tag': 'ALQ_1c277983', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01903.WGS.T C3N-01903 CCRCC WGS tumor CPT0381170009 CPT0381170009.WholeGenome.RP-2158.bam 20156307452 BAM aligned CPTAC3 e54b2d27-18c0-4fe5-9c32-9b8edf64a850 69f89cc5d9091e3c5f087e19aaf5db37 { 'aliquot_tag': 'ALQ_5478c418', 'gdc_sample_type': 'Primary Tumor' } @@ -28276,11 +30332,11 @@ C3N-01904.MethArray.Green.T C3N-01904 CCRCC Methylation Array tumor CPT038143000 C3N-01904.MethArray.Red.T C3N-01904 CCRCC Methylation Array tumor CPT0381430009 205555390157_R02C01_Red.idat 13677955 IDAT Red NA CPTAC3 72854a5a-984c-4f6e-8e20-e8e1d95da275 9bb44d9a51058f9777311610466cc2f5 { 'aliquot_tag': 'ALQ_f135f36b', 'gdc_sample_type': 'Primary Tumor' } C3N-01904.miRNA-Seq.T C3N-01904 CCRCC miRNA-Seq tumor CPT0381430006 210111_UNC32-K00270_0270_AHJ5LKBBXY_AGTCAA_S2_L001_R1_001.unaln.bam 281270434 BAM unaligned CPTAC3 10b99b33-fb23-48b2-9464-ef306c280c2d 765150a3e4ba7da98b82d3c680e6ccc2 { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor' } C3N-01904.miRNA-Seq.T.hg38 C3N-01904 CCRCC miRNA-Seq tumor CPT0381430006 8af75e78-343d-423a-9c76-f377aaa71ded_mirnaseq_gdc_realn.bam 301234588 BAM harmonized CPTAC3 a8c7efde-c015-41fa-b810-3f7b3275d2b4 2d6ac46bb8dda0509ac3b430b947fa7f { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor' } -C3N-01904.RNA-Seq.chimeric.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 f885fa63-9d95-40d2-a9af-aadb482c1fa4.rna_seq.chimeric.gdc_realn.bam 413020564 BAM chimeric harmonized CPTAC3 7899f0d1-5bd2-4cda-902a-cdf2c6dd959b d4cd531772f9ce95ecfa8095d097b00a { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor' } -C3N-01904.RNA-Seq.genomic.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 f885fa63-9d95-40d2-a9af-aadb482c1fa4.rna_seq.genomic.gdc_realn.bam 9560088949 BAM genomic harmonized CPTAC3 9f63f758-12b2-487c-a8b6-e074d7dfa301 a2520f13f7c82fd3be7c5ddfbe6bad69 { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor' } -C3N-01904.RNA-Seq.R1_L006.T C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 210105_UNC32-K00270_0269_BHKN5MBBXY_CCAAGTCT-AAGGATGA_S22_L006_R1_001.fastq.gz 4529073333 FASTQ R1_L006 unaligned CPTAC3 ec9c2f10-abe2-4e34-bf65-76b95f07e67e f4b84cfb872ede34f4387061aa9bbd06 { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor' } -C3N-01904.RNA-Seq.R2_L006.T C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 210105_UNC32-K00270_0269_BHKN5MBBXY_CCAAGTCT-AAGGATGA_S22_L006_R2_001.fastq.gz 5082428448 FASTQ R2_L006 unaligned CPTAC3 694c44c5-29b7-4a2a-8b2b-700c8423889a ca41e1baed9dc91fef25ae7ecb0852b3 { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor' } -C3N-01904.RNA-Seq.transcriptome.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 f885fa63-9d95-40d2-a9af-aadb482c1fa4.rna_seq.transcriptome.gdc_realn.bam 9105818040 BAM transcriptome harmonized CPTAC3 c113c3bd-41fa-435f-8023-35cd943a0a66 f8b6427cd0187caf328cd2807d269bc4 { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor' } +C3N-01904.RNA-Seq.chimeric.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 1fba9630-b04c-473d-b67d-213c07c8cbd9.rna_seq.chimeric.gdc_realn.bam 413018840 BAM chimeric harmonized CPTAC3 626f6d7b-c44f-4853-8876-9739ee57a050 64aeb290cc996f048ebfb65c3e688ef1 { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor' } +C3N-01904.RNA-Seq.genomic.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 1fba9630-b04c-473d-b67d-213c07c8cbd9.rna_seq.genomic.gdc_realn.bam 9568044480 BAM genomic harmonized CPTAC3 6d456424-93c0-476f-9d1d-0099d7220806 b094b3c5f36cf3f310fc0a04262f2cd3 { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor' } +C3N-01904.RNA-Seq.R1_L006.T C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 210105_UNC32-K00270_0269_BHKN5MBBXY_CCAAGTCT-AAGGATGA_S22_L006_R1_001.fastq.gz 4529073333 FASTQ R1_L006 unaligned CPTAC3 ec9c2f10-abe2-4e34-bf65-76b95f07e67e f4b84cfb872ede34f4387061aa9bbd06 { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-01904.RNA-Seq.R2_L006.T C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 210105_UNC32-K00270_0269_BHKN5MBBXY_CCAAGTCT-AAGGATGA_S22_L006_R2_001.fastq.gz 5082428448 FASTQ R2_L006 unaligned CPTAC3 694c44c5-29b7-4a2a-8b2b-700c8423889a ca41e1baed9dc91fef25ae7ecb0852b3 { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-01904.RNA-Seq.transcriptome.T.hg38 C3N-01904 CCRCC RNA-Seq tumor CPT0381430006 1fba9630-b04c-473d-b67d-213c07c8cbd9.rna_seq.transcriptome.gdc_realn.bam 10419516729 BAM transcriptome harmonized CPTAC3 c8552959-fc50-4eeb-8eb4-e1e2163aab10 aa5821c8cca901359037fc66d60eb578 { 'aliquot_tag': 'ALQ_618aeefa', 'gdc_sample_type': 'Primary Tumor' } C3N-01904.WGS.N C3N-01904 CCRCC WGS blood_normal CPT0381540002 CPT0381540002.WholeGenome.RP-2158.bam 23456002017 BAM aligned CPTAC3 0a3af977-8f35-4aa6-809e-597a8c3ab4d1 b6037a0462907211255b0345fc79b4e6 { 'aliquot_tag': 'ALQ_1f9b2556', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01904.WGS.N.hg38 C3N-01904 CCRCC WGS blood_normal CPT0381540002 fb97d04c-527d-425e-b8ca-4298ee511f02_wgs_gdc_realn.bam 69955597389 BAM harmonized CPTAC3 e5dd6e78-21c1-4dc6-9b4f-fb7375528426 3b44678b00176e6ca31512ed5ac72ad1 { 'aliquot_tag': 'ALQ_1f9b2556', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01904.WGS.T C3N-01904 CCRCC WGS tumor CPT0381430009 CPT0381430009.WholeGenome.RP-2158.bam 22981681101 BAM aligned CPTAC3 00a4c86d-df64-44ae-8c3f-dad499bb240b a032f4f710a33ecdfaee4de0b7142c62 { 'aliquot_tag': 'ALQ_f135f36b', 'gdc_sample_type': 'Primary Tumor' } @@ -28297,16 +30353,16 @@ C3N-01905.miRNA-Seq.A C3N-01905 CCRCC miRNA-Seq tissue_normal CPT0124300009 1901 C3N-01905.miRNA-Seq.A.hg38 C3N-01905 CCRCC miRNA-Seq tissue_normal CPT0124300009 efce5f87-ea0b-4f6e-87b2-cece3d3a673c_mirnaseq_gdc_realn.bam 241143242 BAM harmonized CPTAC3 f080ed80-dc32-4ba5-a0ed-49e209c2ab35 6711e8688570927f8cadb92fb306edcf { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01905.miRNA-Seq.T C3N-01905 CCRCC miRNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0176_AHYGLVBBXX_CCAACA_S36_L005_R1_001.unaln.bam 275782932 BAM unaligned CPTAC3 c620d356-8972-4ef7-a0e9-8ae44e16d570 4e98340cc18d8000c784e74771e11788 { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor' } C3N-01905.miRNA-Seq.T.hg38 C3N-01905 CCRCC miRNA-Seq tumor CPT0124210009 cb58c2cb-2be1-4986-aab3-7961bbe5ffe3_mirnaseq_gdc_realn.bam 298964683 BAM harmonized CPTAC3 5d1b23b1-df1e-453a-bce1-ec2f207c0d5a 85d99f0983a51610d62f731a07f5341b { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor' } -C3N-01905.RNA-Seq.chimeric.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 5c717531-6421-4358-9701-5af0883710e7.rna_seq.chimeric.gdc_realn.bam 178656632 BAM chimeric harmonized CPTAC3 c7959135-0af4-4410-be98-818a641f46b2 f3fffd14f0ce00017f56e7ea3e5a17c2 { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01905.RNA-Seq.chimeric.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 1c20f531-b659-4649-b33d-64031c850d1f.rna_seq.chimeric.gdc_realn.bam 34142074 BAM chimeric harmonized CPTAC3 aaf3c654-2960-4b7b-a3e0-688b2f3dfb59 eb15659ae90057c53f7392e352e4134d { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor' } -C3N-01905.RNA-Seq.genomic.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 5c717531-6421-4358-9701-5af0883710e7.rna_seq.genomic.gdc_realn.bam 10128920072 BAM genomic harmonized CPTAC3 41a9d0c8-a935-47e9-ad8c-90b4848a6bf7 4df41e4180ec670e1d2582175323e0c6 { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01905.RNA-Seq.genomic.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 1c20f531-b659-4649-b33d-64031c850d1f.rna_seq.genomic.gdc_realn.bam 7991432292 BAM genomic harmonized CPTAC3 b39ac893-6a3e-4679-a3d6-4d5b1e39f6ba 3aff2c4c287b13bc30bfdbf0adee7c56 { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor' } -C3N-01905.RNA-Seq.R1_L004.A C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L004_R1_001.fastq.gz 4569038241 FASTQ R1_L004 unaligned CPTAC3 ec354fef-7a90-4200-b919-f019b764e28f b0ec57fd2acbbeda53b0ad075e25f0e2 { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01905.RNA-Seq.R1_L004.T C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0177_BH32KTBBXY_CTTGTA_S16_L004_R1_001.fastq.gz 3883414587 FASTQ R1_L004 unaligned CPTAC3 634ad8f8-227e-4742-a2ea-a224081e3544 9285b30fe54c2e2eac7e237ccc79e659 { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor' } -C3N-01905.RNA-Seq.R2_L004.A C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L004_R2_001.fastq.gz 5056705329 FASTQ R2_L004 unaligned CPTAC3 857de801-17c6-4e83-9b3a-6bc0ca7884a1 ed8528bde2bb3bc77dac3d4cc2c60069 { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01905.RNA-Seq.R2_L004.T C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0177_BH32KTBBXY_CTTGTA_S16_L004_R2_001.fastq.gz 4017058100 FASTQ R2_L004 unaligned CPTAC3 c2f011af-3c00-4720-931f-9a97b46e081a ba6ca9340b12ebb9243ac23df809413d { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor' } -C3N-01905.RNA-Seq.transcriptome.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 5c717531-6421-4358-9701-5af0883710e7.rna_seq.transcriptome.gdc_realn.bam 10449273475 BAM transcriptome harmonized CPTAC3 ef2359d3-aa8d-4c90-9fc0-f20fd1c72fca efe3ea1e50c42508f4344f9490a36e09 { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01905.RNA-Seq.transcriptome.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 1c20f531-b659-4649-b33d-64031c850d1f.rna_seq.transcriptome.gdc_realn.bam 9313612566 BAM transcriptome harmonized CPTAC3 12e08916-db30-4c0e-bbee-c0ffcee8372c 29c2fb96a4258f0d9e3353983ec89d10 { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor' } +C3N-01905.RNA-Seq.chimeric.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 6e2ed108-5d29-44e3-9d23-68b5b17d27da.rna_seq.chimeric.gdc_realn.bam 178628768 BAM chimeric harmonized CPTAC3 6bf3d6a5-436f-4e81-9e72-9a28c829f975 3ab2b0ab181601884fff48aacbe68d74 { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01905.RNA-Seq.chimeric.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 52fb5c01-9384-4660-b20f-64e802430165.rna_seq.chimeric.gdc_realn.bam 34118612 BAM chimeric harmonized CPTAC3 98d2d0f9-e551-4328-ba5a-23bc9961998c 9fca3195fbd25c7e2b6d259ede9ddac1 { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor' } +C3N-01905.RNA-Seq.genomic.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 6e2ed108-5d29-44e3-9d23-68b5b17d27da.rna_seq.genomic.gdc_realn.bam 10130276417 BAM genomic harmonized CPTAC3 7a0ebbaf-1fac-4333-9d95-7b4b1c80f407 31f3158dcf8132de63d840911b9d6561 { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01905.RNA-Seq.genomic.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 52fb5c01-9384-4660-b20f-64e802430165.rna_seq.genomic.gdc_realn.bam 7992852184 BAM genomic harmonized CPTAC3 7f624411-67a9-4105-861c-d5f159869d44 dfaf9b08519f9f95e8aef4481ab46ff4 { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor' } +C3N-01905.RNA-Seq.R1_L004.A C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L004_R1_001.fastq.gz 4569038241 FASTQ R1_L004 unaligned CPTAC3 ec354fef-7a90-4200-b919-f019b764e28f b0ec57fd2acbbeda53b0ad075e25f0e2 { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01905.RNA-Seq.R1_L004.T C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0177_BH32KTBBXY_CTTGTA_S16_L004_R1_001.fastq.gz 3883414587 FASTQ R1_L004 unaligned CPTAC3 634ad8f8-227e-4742-a2ea-a224081e3544 9285b30fe54c2e2eac7e237ccc79e659 { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01905.RNA-Seq.R2_L004.A C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L004_R2_001.fastq.gz 5056705329 FASTQ R2_L004 unaligned CPTAC3 857de801-17c6-4e83-9b3a-6bc0ca7884a1 ed8528bde2bb3bc77dac3d4cc2c60069 { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01905.RNA-Seq.R2_L004.T C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 190108_UNC31-K00269_0177_BH32KTBBXY_CTTGTA_S16_L004_R2_001.fastq.gz 4017058100 FASTQ R2_L004 unaligned CPTAC3 c2f011af-3c00-4720-931f-9a97b46e081a ba6ca9340b12ebb9243ac23df809413d { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01905.RNA-Seq.transcriptome.A.hg38 C3N-01905 CCRCC RNA-Seq tissue_normal CPT0124300009 6e2ed108-5d29-44e3-9d23-68b5b17d27da.rna_seq.transcriptome.gdc_realn.bam 11962641741 BAM transcriptome harmonized CPTAC3 35450836-7e54-496d-93d3-24f9650b0ff8 26c8907ed2e2ca36d2984b771715f6bc { 'aliquot_tag': 'ALQ_469ea2ea', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01905.RNA-Seq.transcriptome.T.hg38 C3N-01905 CCRCC RNA-Seq tumor CPT0124210009 52fb5c01-9384-4660-b20f-64e802430165.rna_seq.transcriptome.gdc_realn.bam 10549697664 BAM transcriptome harmonized CPTAC3 9961f176-3d48-469e-b753-40cbf0027a04 69e7806739be50aa6bf0c90fa7757184 { 'aliquot_tag': 'ALQ_b0a258ff', 'gdc_sample_type': 'Primary Tumor' } C3N-01905.WGS.A C3N-01905 CCRCC WGS tissue_normal CPT0124300006 CPT0124300006.WholeGenome.RP-1303.bam 61953026588 BAM aligned CPTAC3 ae08017b-4c49-4f5b-bfe8-9e5799d7630c ce6f9a87b5a1beb990018c62874f58fe { 'aliquot_tag': 'ALQ_d621bf7b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01905.WGS.A.hg38 C3N-01905 CCRCC WGS tissue_normal CPT0124300006 9d985435-8848-4d92-b51c-14a5f155d6bb_wgs_gdc_realn.bam 90060154555 BAM harmonized CPTAC3 1ded8b8e-9f60-4cbd-8d4e-de984ef6f50b 02258fadc84c575f7de4761a2337299c { 'aliquot_tag': 'ALQ_d621bf7b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01905.WGS.N C3N-01905 CCRCC WGS blood_normal CPT0124340002 CPT0124340002.WholeGenome.RP-1303.bam 62502300635 BAM aligned CPTAC3 c6f5ef00-c23c-41c4-9b62-c0826cac8262 ab32fcb30873daf61238a8778acbc4f9 { 'aliquot_tag': 'ALQ_24ccdda2', 'gdc_sample_type': 'Blood Derived Normal' } @@ -28323,11 +30379,11 @@ C3N-01907.MethArray.Green.T C3N-01907 PDA Methylation Array tumor CPT0162830008 C3N-01907.MethArray.Red.T C3N-01907 PDA Methylation Array tumor CPT0162830008 203561620072_R01C01_Red.idat 13676218 IDAT Red NA CPTAC3 82b508fd-6928-4aed-b5b0-f86e56eac933 745e5fdc021f49557f7a57ecd8259259 { 'aliquot_tag': 'ALQ_fb6423af', 'gdc_sample_type': 'Primary Tumor' } C3N-01907.miRNA-Seq.T C3N-01907 PDA miRNA-Seq tumor CPT0162830011 190712_UNC32-K00270_0192_BH7HL3BBXY_CCAACA_S12_L006_R1_001.unaln.bam 237720203 BAM unaligned CPTAC3 b0011162-0894-45c9-9a53-33f6f557b00f f8934d795daf203471952e8aeda9f0e5 { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor' } C3N-01907.miRNA-Seq.T.hg38 C3N-01907 PDA miRNA-Seq tumor CPT0162830011 5c0aa812-0a55-4ed4-8876-bb589be31409_mirnaseq_gdc_realn.bam 264132706 BAM harmonized CPTAC3 c050c3a8-20a5-4e1f-a8eb-ce3a41d7ecc4 eff96c8cea378316024a7f6260463d20 { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01907.RNA-Seq.chimeric.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 2aeb5983-8002-40de-a2ed-ff376aa321af.rna_seq.chimeric.gdc_realn.bam 46250340 BAM chimeric harmonized CPTAC3 28539407-f76e-4eee-9821-05ece7e61d72 94de67139e42e56fe9205b19b9c4124e { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01907.RNA-Seq.genomic.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 2aeb5983-8002-40de-a2ed-ff376aa321af.rna_seq.genomic.gdc_realn.bam 11609819000 BAM genomic harmonized CPTAC3 4ff2731b-8775-4702-a0f1-2bd20387f033 4a688292b2eda8d4f6c6dc44e4455205 { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01907.RNA-Seq.R1_L004.T C3N-01907 PDA RNA-Seq tumor CPT0162830011 190614_UNC32-K00270_0182_BH7777BBXY_GATTCTGC-GACGAGAG_S15_L004_R1_001.fastq.gz 4432083755 FASTQ R1_L004 unaligned CPTAC3 65b64b6c-529a-4724-b8ce-38a225cb572c 9f8dc7cfc61a1035f8735401f665f009 { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01907.RNA-Seq.R2_L004.T C3N-01907 PDA RNA-Seq tumor CPT0162830011 190614_UNC32-K00270_0182_BH7777BBXY_GATTCTGC-GACGAGAG_S15_L004_R2_001.fastq.gz 4919976698 FASTQ R2_L004 unaligned CPTAC3 bad5f741-5f43-4cce-b96d-0a559c9336be 01295e51fc7a152390f0682b01b08eeb { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor' } -C3N-01907.RNA-Seq.transcriptome.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 2aeb5983-8002-40de-a2ed-ff376aa321af.rna_seq.transcriptome.gdc_realn.bam 9506236575 BAM transcriptome harmonized CPTAC3 6edd1aa9-2f41-4f3e-887f-1f6452a89308 8c6811ff377d1cc276079c747b358d61 { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01907.RNA-Seq.chimeric.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 d0fbcf53-7d3b-43a0-99da-519cdd2ddd45.rna_seq.chimeric.gdc_realn.bam 46219557 BAM chimeric harmonized CPTAC3 83c8f122-1672-49ab-b3f8-8e2060e66909 91c0469bbae6cf7f05bc02675535b7f0 { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01907.RNA-Seq.genomic.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 d0fbcf53-7d3b-43a0-99da-519cdd2ddd45.rna_seq.genomic.gdc_realn.bam 11609413373 BAM genomic harmonized CPTAC3 8df0b51a-f751-4b31-869f-960e1340547f 808ae7dc79f9846c9823106b8f80dd85 { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor' } +C3N-01907.RNA-Seq.R1_L004.T C3N-01907 PDA RNA-Seq tumor CPT0162830011 190614_UNC32-K00270_0182_BH7777BBXY_GATTCTGC-GACGAGAG_S15_L004_R1_001.fastq.gz 4432083755 FASTQ R1_L004 unaligned CPTAC3 65b64b6c-529a-4724-b8ce-38a225cb572c 9f8dc7cfc61a1035f8735401f665f009 { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-01907.RNA-Seq.R2_L004.T C3N-01907 PDA RNA-Seq tumor CPT0162830011 190614_UNC32-K00270_0182_BH7777BBXY_GATTCTGC-GACGAGAG_S15_L004_R2_001.fastq.gz 4919976698 FASTQ R2_L004 unaligned CPTAC3 bad5f741-5f43-4cce-b96d-0a559c9336be 01295e51fc7a152390f0682b01b08eeb { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-01907.RNA-Seq.transcriptome.T.hg38 C3N-01907 PDA RNA-Seq tumor CPT0162830011 d0fbcf53-7d3b-43a0-99da-519cdd2ddd45.rna_seq.transcriptome.gdc_realn.bam 10789634457 BAM transcriptome harmonized CPTAC3 de40caf9-5efc-4b88-bab4-d085fafdbe7b 69cf6dfe7e393cbe29c8683c56a4d815 { 'aliquot_tag': 'ALQ_9ba3aa4a', 'gdc_sample_type': 'Primary Tumor' } C3N-01907.WGS.N C3N-01907 PDA WGS blood_normal CPT0162870002 CPT0162870002.WholeGenome.RP-1303.bam 76936729921 BAM aligned CPTAC3 a3a1f50c-c025-4ba7-b477-28eec659a2fa eb54adf058f733bffc8f745b367532e9 { 'aliquot_tag': 'ALQ_ee316c71', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01907.WGS.N.hg38 C3N-01907 PDA WGS blood_normal CPT0162870002 ee39c35d-388f-4d49-b2f3-81d7f51f7867_wgs_gdc_realn.bam 112116424585 BAM harmonized CPTAC3 ebb59086-9585-461d-8698-17fb6c695d02 aadb030c4a65d90e78ca3f99a56a44e1 { 'aliquot_tag': 'ALQ_ee316c71', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01907.WGS.T C3N-01907 PDA WGS tumor CPT0162830008 CPT0162830008.WholeGenome.RP-1303.bam 144970727417 BAM aligned CPTAC3 c23fb285-6016-4c82-83b1-ad96009162a4 27c8276f25362ca9fc6fc3488f961786 { 'aliquot_tag': 'ALQ_fb6423af', 'gdc_sample_type': 'Primary Tumor' } @@ -28346,12 +30402,12 @@ C3N-01943.miRNA-Seq.T C3N-01943 HNSCC miRNA-Seq tumor CPT0163410009 190228_UNC32 C3N-01943.miRNA-Seq.T.hg38 C3N-01943 HNSCC miRNA-Seq tumor CPT0163410009 f5ed841b-ab8b-41ff-8d5d-b10aff881cc7_mirnaseq_gdc_realn.bam 291817805 BAM harmonized CPTAC3 66fabb4c-94dc-4a75-8941-fef39a2fd45f 8eb52bbcd672045297acd95ba8bcd7d8 { 'aliquot_tag': 'ALQ_27168b96', 'gdc_sample_type': 'Primary Tumor' } C3N-01943.RNA-Seq.chimeric.A.hg38 C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 e272c50c-7f05-438b-8025-6e45a7e45567.rna_seq.chimeric.gdc_realn.bam 229627330 BAM chimeric harmonized CPTAC3 b1cb58cb-eafc-4cba-844c-f562d897906a 9f1971d3a2d10083e9f878e70ed194b2 { 'aliquot_tag': 'ALQ_5dd6d8f6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01943.RNA-Seq.chimeric.T.hg38 C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 2390fd7d-2d7a-4613-acdd-a5a3891a2d8c.rna_seq.chimeric.gdc_realn.bam 272800435 BAM chimeric harmonized CPTAC3 b817f9e0-b7bb-4951-ba15-646443695f7a 31aabb91c4fa1ed52a15b78702e0ab2e { 'aliquot_tag': 'ALQ_27168b96', 'gdc_sample_type': 'Primary Tumor' } -C3N-01943.RNA-Seq.genomic.A.hg38 C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 e272c50c-7f05-438b-8025-6e45a7e45567.rna_seq.genomic.gdc_realn.bam 7722806430 BAM genomic harmonized CPTAC3 e65b7075-b352-4f2b-bb98-eb527497ff1c 057f8e139613d92cf8614eebd7dad4c3 { 'aliquot_tag': 'ALQ_5dd6d8f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01943.RNA-Seq.genomic.T.hg38 C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 2390fd7d-2d7a-4613-acdd-a5a3891a2d8c.rna_seq.genomic.gdc_realn.bam 7988084503 BAM genomic harmonized CPTAC3 de68761f-5c92-4cd0-802b-8c9931137ced c7427778311b50cb94964d8754ab1095 { 'aliquot_tag': 'ALQ_27168b96', 'gdc_sample_type': 'Primary Tumor' } -C3N-01943.RNA-Seq.R1_L005.A C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTTCC_S19_L005_R1_001.fastq.gz 3793274236 FASTQ R1_L005 unaligned CPTAC3 45275e46-5062-4d69-a686-d04d5547f604 087473ff7f7f83e2e77cdc26b11f3cf9 { 'aliquot_tag': 'ALQ_5dd6d8f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01943.RNA-Seq.R1_L007.T C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L007_R1_001.fastq.gz 3902422854 FASTQ R1_L007 unaligned CPTAC3 68c5614d-cbd8-420d-bd6e-f9d959a20e70 ce121d28f0d4f36d165de3c6c288e2c9 { 'aliquot_tag': 'ALQ_27168b96', 'gdc_sample_type': 'Primary Tumor' } -C3N-01943.RNA-Seq.R2_L005.A C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTTCC_S19_L005_R2_001.fastq.gz 4030990961 FASTQ R2_L005 unaligned CPTAC3 5b426b25-d2f5-444d-9764-578b39d0aece 2c910822361221ab429b436640148e12 { 'aliquot_tag': 'ALQ_5dd6d8f6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01943.RNA-Seq.R2_L007.T C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L007_R2_001.fastq.gz 4193569724 FASTQ R2_L007 unaligned CPTAC3 bdbdc07c-3db0-4346-b066-71179f83f3f5 771af00fb1e875f8fd0e7ddec0af915b { 'aliquot_tag': 'ALQ_27168b96', 'gdc_sample_type': 'Primary Tumor' } +C3N-01943.RNA-Seq.genomic.A.hg38 C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 e272c50c-7f05-438b-8025-6e45a7e45567.rna_seq.genomic.gdc_realn.bam 7722806430 BAM genomic harmonized CPTAC3 b819e475-f772-4e3e-b948-ce0b30e5c340 057f8e139613d92cf8614eebd7dad4c3 { 'aliquot_tag': 'ALQ_5dd6d8f6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01943.RNA-Seq.genomic.T.hg38 C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 2390fd7d-2d7a-4613-acdd-a5a3891a2d8c.rna_seq.genomic.gdc_realn.bam 7988084503 BAM genomic harmonized CPTAC3 78806e14-55ba-46a8-8556-e976d5163449 c7427778311b50cb94964d8754ab1095 { 'aliquot_tag': 'ALQ_27168b96', 'gdc_sample_type': 'Primary Tumor' } +C3N-01943.RNA-Seq.R1_L005.A C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTTCC_S19_L005_R1_001.fastq.gz 3793274236 FASTQ R1_L005 unaligned CPTAC3 45275e46-5062-4d69-a686-d04d5547f604 087473ff7f7f83e2e77cdc26b11f3cf9 { 'aliquot_tag': 'ALQ_5dd6d8f6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01943.RNA-Seq.R1_L007.T C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L007_R1_001.fastq.gz 3902422854 FASTQ R1_L007 unaligned CPTAC3 68c5614d-cbd8-420d-bd6e-f9d959a20e70 ce121d28f0d4f36d165de3c6c288e2c9 { 'aliquot_tag': 'ALQ_27168b96', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01943.RNA-Seq.R2_L005.A C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 190215_UNC32-K00270_0147_AH3VGHBBXY_AGTTCC_S19_L005_R2_001.fastq.gz 4030990961 FASTQ R2_L005 unaligned CPTAC3 5b426b25-d2f5-444d-9764-578b39d0aece 2c910822361221ab429b436640148e12 { 'aliquot_tag': 'ALQ_5dd6d8f6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01943.RNA-Seq.R2_L007.T C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 190215_UNC32-K00270_0147_AH3VGHBBXY_TTAGGC_S1_L007_R2_001.fastq.gz 4193569724 FASTQ R2_L007 unaligned CPTAC3 bdbdc07c-3db0-4346-b066-71179f83f3f5 771af00fb1e875f8fd0e7ddec0af915b { 'aliquot_tag': 'ALQ_27168b96', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01943.RNA-Seq.transcriptome.A.hg38 C3N-01943 HNSCC RNA-Seq tissue_normal CPT0163430009 e272c50c-7f05-438b-8025-6e45a7e45567.rna_seq.transcriptome.gdc_realn.bam 10212502479 BAM transcriptome harmonized CPTAC3 4616062d-2a82-466f-a138-a970730dff0c 0aba2403c7ccdef6c71394216aedede6 { 'aliquot_tag': 'ALQ_5dd6d8f6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01943.RNA-Seq.transcriptome.T.hg38 C3N-01943 HNSCC RNA-Seq tumor CPT0163410009 2390fd7d-2d7a-4613-acdd-a5a3891a2d8c.rna_seq.transcriptome.gdc_realn.bam 10783688599 BAM transcriptome harmonized CPTAC3 d611ca43-e6a5-421c-8669-5fb01a606cc8 e3798d1d4295f3a9ea4a19bdaf582f83 { 'aliquot_tag': 'ALQ_27168b96', 'gdc_sample_type': 'Primary Tumor' } C3N-01943.WGS.N C3N-01943 HNSCC WGS blood_normal CPT0163470002 CPT0163470002.WholeGenome.RP-1303.bam 63720322260 BAM aligned CPTAC3 12329dd1-e025-4e5a-8adc-d9913290a3a7 2224d013cd0663f1c08df8737cb50efc { 'aliquot_tag': 'ALQ_3f84a7be', 'gdc_sample_type': 'Blood Derived Normal' } @@ -28374,16 +30430,19 @@ C3N-01944.miRNA-Seq.T C3N-01944 HNSCC miRNA-Seq tumor CPT0163480009 190228_UNC32 C3N-01944.miRNA-Seq.T.hg38 C3N-01944 HNSCC miRNA-Seq tumor CPT0163480009 879d37d7-0b83-40b4-b823-0da7301956d3_mirnaseq_gdc_realn.bam 288365370 BAM harmonized CPTAC3 759487c9-5f19-4d7f-acfb-40b5a49416ad 5d8a83b37852b5b5e46e0f3a6b5982a8 { 'aliquot_tag': 'ALQ_2a06e9e7', 'gdc_sample_type': 'Primary Tumor' } C3N-01944.RNA-Seq.chimeric.A.hg38 C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 a701a538-1b24-457d-bf14-fc3c00b18bb0.rna_seq.chimeric.gdc_realn.bam 315890640 BAM chimeric harmonized CPTAC3 7b3ad84e-10be-4b72-8e0b-17fcaad2ba5d 2dd9dbca69f6c2c110669adf90984dd3 { 'aliquot_tag': 'ALQ_1766c057', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01944.RNA-Seq.chimeric.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 419e4a59-3f1c-4703-83d7-ad257d86633e.rna_seq.chimeric.gdc_realn.bam 243130979 BAM chimeric harmonized CPTAC3 6bcd98ba-6abc-4625-92d7-8b015c96dbdf a349c46ec1ee62785c3adada350ee687 { 'aliquot_tag': 'ALQ_2a06e9e7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01944.RNA-Seq.genomic.A.hg38 C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 a701a538-1b24-457d-bf14-fc3c00b18bb0.rna_seq.genomic.gdc_realn.bam 10066741228 BAM genomic harmonized CPTAC3 b283f776-863b-4e0b-b22b-00c01f0a4b04 475d07a98543a4c71b0457af7a8b16c9 { 'aliquot_tag': 'ALQ_1766c057', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01944.RNA-Seq.chimeric.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 07880979-24b7-49b8-8235-4fd62c554755.rna_seq.chimeric.gdc_realn.bam 304343179 BAM chimeric harmonized CPTAC3 86d41375-9143-4cd4-80e9-eeecdc179428 6a6ec353fe2fed89d4230423bba70ac9 { 'aliquot_tag': 'ALQ_985c98ea', 'gdc_sample_type': 'Primary Tumor' } +C3N-01944.RNA-Seq.genomic.A.hg38 C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 a701a538-1b24-457d-bf14-fc3c00b18bb0.rna_seq.genomic.gdc_realn.bam 10066741228 BAM genomic harmonized CPTAC3 5253c934-f70f-4294-9f95-8b9b34b4e6cb 475d07a98543a4c71b0457af7a8b16c9 { 'aliquot_tag': 'ALQ_1766c057', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01944.RNA-Seq.genomic.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 419e4a59-3f1c-4703-83d7-ad257d86633e.rna_seq.genomic.gdc_realn.bam 8425441738 BAM genomic harmonized CPTAC3 fc5fb0ff-5714-4c2a-bde2-b4ef49a92da3 ddef0b4cdf2a03840fe6ec45d8164d2a { 'aliquot_tag': 'ALQ_2a06e9e7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01944.RNA-Seq.R1_L001.A C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L001_R1_001.fastq.gz 4852855256 FASTQ R1_L001 unaligned CPTAC3 f660d943-e7c6-4666-96f6-ec0ff54b1a9b 050d6dc5bd7041e9f182b731c4299d61 { 'aliquot_tag': 'ALQ_1766c057', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01944.RNA-Seq.R1_L007.T C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L007_R1_001.fastq.gz 3981198765 FASTQ R1_L007 unaligned CPTAC3 8b942ced-227d-40f5-93ba-1b1cb81c9497 ed250e7329b4abed7a70bd4f448388b2 { 'aliquot_tag': 'ALQ_2a06e9e7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01944.RNA-Seq.R1_.T C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 20210729_P3_B1_WB7988-Plate3_S13_R1_001.fastq.gz 9435825392 FASTQ R1_ unaligned CPTAC3 0a8ade79-263c-401b-b1ad-818f16174c33 a885d4892177bcbb0de34ae6d2ba7d4d { 'aliquot_tag': 'ALQ_985c98ea', 'gdc_sample_type': 'Primary Tumor' } -C3N-01944.RNA-Seq.R2_L001.A C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L001_R2_001.fastq.gz 4679196011 FASTQ R2_L001 unaligned CPTAC3 2e940f03-221f-44bc-a712-f5f4c622d928 c06277115f77c9d32efe22343ca34f49 { 'aliquot_tag': 'ALQ_1766c057', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01944.RNA-Seq.R2_L007.T C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L007_R2_001.fastq.gz 4133665413 FASTQ R2_L007 unaligned CPTAC3 67e463f4-543c-462a-84ed-3b8e12491b11 93ba9399da90084521df346ab4603ec5 { 'aliquot_tag': 'ALQ_2a06e9e7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01944.RNA-Seq.R2_.T C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 20210729_P3_B1_WB7988-Plate3_S13_R2_001.fastq.gz 9734138521 FASTQ R2_ unaligned CPTAC3 4ef61294-47e2-4b19-98d0-b0446e38bc17 2529defc43f78d84c6b2eeaee739f86a { 'aliquot_tag': 'ALQ_985c98ea', 'gdc_sample_type': 'Primary Tumor' } +C3N-01944.RNA-Seq.genomic.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 07880979-24b7-49b8-8235-4fd62c554755.rna_seq.genomic.gdc_realn.bam 14498171190 BAM genomic harmonized CPTAC3 5cc2500a-6943-4788-85c2-f2b93c6ae64e 98a61abb80e803710967079d4dd25214 { 'aliquot_tag': 'ALQ_985c98ea', 'gdc_sample_type': 'Primary Tumor' } +C3N-01944.RNA-Seq.R1_L001.A C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L001_R1_001.fastq.gz 4852855256 FASTQ R1_L001 unaligned CPTAC3 f660d943-e7c6-4666-96f6-ec0ff54b1a9b 050d6dc5bd7041e9f182b731c4299d61 { 'aliquot_tag': 'ALQ_1766c057', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-01944.RNA-Seq.R1_L007.T C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L007_R1_001.fastq.gz 3981198765 FASTQ R1_L007 unaligned CPTAC3 8b942ced-227d-40f5-93ba-1b1cb81c9497 ed250e7329b4abed7a70bd4f448388b2 { 'aliquot_tag': 'ALQ_2a06e9e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01944.RNA-Seq.R2_L001.A C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 190215_UNC32-K00270_0147_AH3VGHBBXY_ATCACG_S3_L001_R2_001.fastq.gz 4679196011 FASTQ R2_L001 unaligned CPTAC3 2e940f03-221f-44bc-a712-f5f4c622d928 c06277115f77c9d32efe22343ca34f49 { 'aliquot_tag': 'ALQ_1766c057', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-01944.RNA-Seq.R2_L007.T C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L007_R2_001.fastq.gz 4133665413 FASTQ R2_L007 unaligned CPTAC3 67e463f4-543c-462a-84ed-3b8e12491b11 93ba9399da90084521df346ab4603ec5 { 'aliquot_tag': 'ALQ_2a06e9e7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01944.RNA-Seq.T C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 20210729_P3_B1_WB7988-Plate3_S13_R1_001.fastq.gz 9435825392 FASTQ unaligned CPTAC3 0a8ade79-263c-401b-b1ad-818f16174c33 a885d4892177bcbb0de34ae6d2ba7d4d +C3N-01944.RNA-Seq.T C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 20210729_P3_B1_WB7988-Plate3_S13_R2_001.fastq.gz 9734138521 FASTQ unaligned CPTAC3 4ef61294-47e2-4b19-98d0-b0446e38bc17 2529defc43f78d84c6b2eeaee739f86a C3N-01944.RNA-Seq.transcriptome.A.hg38 C3N-01944 HNSCC RNA-Seq tissue_normal CPT0163490009 a701a538-1b24-457d-bf14-fc3c00b18bb0.rna_seq.transcriptome.gdc_realn.bam 12049916146 BAM transcriptome harmonized CPTAC3 2b65e074-f563-42ad-9cf5-1b6a8b431e29 aab6d9d1a107d800e8ba8e249ee804f3 { 'aliquot_tag': 'ALQ_1766c057', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01944.RNA-Seq.transcriptome.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0163480009 419e4a59-3f1c-4703-83d7-ad257d86633e.rna_seq.transcriptome.gdc_realn.bam 11134775716 BAM transcriptome harmonized CPTAC3 540d8dfe-149d-46cf-93ef-f27686027da6 e6e736ca4c4640ae4a9231487e692ff0 { 'aliquot_tag': 'ALQ_2a06e9e7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01944.RNA-Seq.transcriptome.T.hg38 C3N-01944 HNSCC RNA-Seq tumor CPT0314950011 07880979-24b7-49b8-8235-4fd62c554755.rna_seq.transcriptome.gdc_realn.bam 9163979622 BAM transcriptome harmonized CPTAC3 0fc58d89-7d99-4eac-90c2-d450d623ff66 b3c6b1f883044d0e9ed4ef1bd454b804 { 'aliquot_tag': 'ALQ_985c98ea', 'gdc_sample_type': 'Primary Tumor' } C3N-01944.WGS.N C3N-01944 HNSCC WGS blood_normal CPT0163520002 CPT0163520002.WholeGenome.RP-1303.bam 80826084042 BAM aligned CPTAC3 3d06f871-92ea-47d8-b715-a192e777e003 35ce4795ba0c184e93ba0e4a9a63e1d7 { 'aliquot_tag': 'ALQ_3c38fb6b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01944.WGS.N.hg38 C3N-01944 HNSCC WGS blood_normal CPT0163520002 bf73b92d-dc07-472d-8e9a-199f94d96ebd_wgs_gdc_realn.bam 121021014190 BAM harmonized CPTAC3 57855f1a-f4e4-4a7c-a22d-a74033ebbc12 0e2c8d5c7eeb401d909edf6612da8131 { 'aliquot_tag': 'ALQ_3c38fb6b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01944.WGS.T C3N-01944 HNSCC WGS tumor CPT0163480006 CPT0163480006.WholeGenome.RP-1303.bam 67603844591 BAM aligned CPTAC3 b6f2d9d9-655c-4d31-ac82-d2a38af20829 4d36d4034fa492c1b8fbfa232590523c { 'aliquot_tag': 'ALQ_bab9f476', 'gdc_sample_type': 'Primary Tumor' } @@ -28399,9 +30458,9 @@ C3N-01945.MethArray.Red.T C3N-01945 HNSCC Methylation Array tumor CPT0163530006 C3N-01945.miRNA-Seq.T C3N-01945 HNSCC miRNA-Seq tumor CPT0163530009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L002_R1_001.unaln.bam 232473800 BAM unaligned CPTAC3 76260373-fbdc-4c92-936a-2677883786f0 0cdaf5055ce2f107220f31e1aec1ce75 { 'aliquot_tag': 'ALQ_968a0b53', 'gdc_sample_type': 'Primary Tumor' } C3N-01945.miRNA-Seq.T.hg38 C3N-01945 HNSCC miRNA-Seq tumor CPT0163530009 609d920c-5469-4264-a1a2-76fd0bcd69d5_mirnaseq_gdc_realn.bam 258862170 BAM harmonized CPTAC3 dbd43cd3-aace-4ea5-917d-eeb51ccab2e1 3f14d578e4b98b40849a449d13e5ea0d { 'aliquot_tag': 'ALQ_968a0b53', 'gdc_sample_type': 'Primary Tumor' } C3N-01945.RNA-Seq.chimeric.T.hg38 C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 c8f96056-f784-4d3c-a4d8-2df423015991.rna_seq.chimeric.gdc_realn.bam 213255068 BAM chimeric harmonized CPTAC3 0a56ef37-8e8d-4004-9f13-3e1552718932 d0677ac87a1b2fb024b10ba4e3590c6f { 'aliquot_tag': 'ALQ_968a0b53', 'gdc_sample_type': 'Primary Tumor' } -C3N-01945.RNA-Seq.genomic.T.hg38 C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 c8f96056-f784-4d3c-a4d8-2df423015991.rna_seq.genomic.gdc_realn.bam 7952140532 BAM genomic harmonized CPTAC3 7a479ec0-cbfc-4e42-ac27-cdc4eebe8df2 53698d79b3365e3207f9c94f2d21bc04 { 'aliquot_tag': 'ALQ_968a0b53', 'gdc_sample_type': 'Primary Tumor' } -C3N-01945.RNA-Seq.R1_L008.T C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3531878135 FASTQ R1_L008 unaligned CPTAC3 fb578361-069b-4669-b06d-d5a645375596 46f596f38de750feb395d76ebc568672 { 'aliquot_tag': 'ALQ_968a0b53', 'gdc_sample_type': 'Primary Tumor' } -C3N-01945.RNA-Seq.R2_L008.T C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3892965269 FASTQ R2_L008 unaligned CPTAC3 8d79172c-3f63-4c2e-847e-5da91b1b22b3 959aa20d1e43c753d37d95287600923f { 'aliquot_tag': 'ALQ_968a0b53', 'gdc_sample_type': 'Primary Tumor' } +C3N-01945.RNA-Seq.genomic.T.hg38 C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 c8f96056-f784-4d3c-a4d8-2df423015991.rna_seq.genomic.gdc_realn.bam 7952140532 BAM genomic harmonized CPTAC3 e6428da2-977a-44dd-82e3-f410d50bad20 53698d79b3365e3207f9c94f2d21bc04 { 'aliquot_tag': 'ALQ_968a0b53', 'gdc_sample_type': 'Primary Tumor' } +C3N-01945.RNA-Seq.R1_L008.T C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L008_R1_001.fastq.gz 3531878135 FASTQ R1_L008 unaligned CPTAC3 fb578361-069b-4669-b06d-d5a645375596 46f596f38de750feb395d76ebc568672 { 'aliquot_tag': 'ALQ_968a0b53', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01945.RNA-Seq.R2_L008.T C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACAGTG_S5_L008_R2_001.fastq.gz 3892965269 FASTQ R2_L008 unaligned CPTAC3 8d79172c-3f63-4c2e-847e-5da91b1b22b3 959aa20d1e43c753d37d95287600923f { 'aliquot_tag': 'ALQ_968a0b53', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01945.RNA-Seq.transcriptome.T.hg38 C3N-01945 HNSCC RNA-Seq tumor CPT0163530009 c8f96056-f784-4d3c-a4d8-2df423015991.rna_seq.transcriptome.gdc_realn.bam 9626989171 BAM transcriptome harmonized CPTAC3 be232ceb-74ad-4fb5-8209-a360f3ee2ef0 4d7338bf841012a0de22040b0b3c3328 { 'aliquot_tag': 'ALQ_968a0b53', 'gdc_sample_type': 'Primary Tumor' } C3N-01945.WGS.N C3N-01945 HNSCC WGS blood_normal CPT0163590002 CPT0163590002.WholeGenome.RP-1303.bam 62241006496 BAM aligned CPTAC3 9ca771bc-65e9-4050-b766-0e89878c97b1 6a8bd12ec3a746da7363c1842313ff04 { 'aliquot_tag': 'ALQ_4be8ca7a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01945.WGS.N.hg38 C3N-01945 HNSCC WGS blood_normal CPT0163590002 b5b1502d-305a-443a-ad82-76c9d2ea459b_wgs_gdc_realn.bam 91102003657 BAM harmonized CPTAC3 91fd0430-e5b7-4e81-b770-4772b9009448 10caba31cad3cd4879fca08c37edd52f { 'aliquot_tag': 'ALQ_4be8ca7a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -28419,12 +30478,12 @@ C3N-01946.miRNA-Seq.T C3N-01946 HNSCC miRNA-Seq tumor CPT0163600009 190228_UNC32 C3N-01946.miRNA-Seq.T.hg38 C3N-01946 HNSCC miRNA-Seq tumor CPT0163600009 0325a52b-47c9-4957-af75-4af5ba192469_mirnaseq_gdc_realn.bam 219558353 BAM harmonized CPTAC3 667f9176-5935-4e29-babd-e75817f72b94 918cee3d11ea2007188e02b0a6d1239b { 'aliquot_tag': 'ALQ_57be032d', 'gdc_sample_type': 'Primary Tumor' } C3N-01946.RNA-Seq.chimeric.A.hg38 C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 55f2f99e-8029-4dc7-aaf8-bc867a5f4ea2.rna_seq.chimeric.gdc_realn.bam 155150359 BAM chimeric harmonized CPTAC3 6b933ffb-99b7-4a4d-b90e-66fe45dfbc84 778d388bb3c42b6607cc8bd2537dcaf5 { 'aliquot_tag': 'ALQ_fa61370c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01946.RNA-Seq.chimeric.T.hg38 C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 862dc37a-950a-4147-9728-17b57730ef2e.rna_seq.chimeric.gdc_realn.bam 227007587 BAM chimeric harmonized CPTAC3 7284cf8e-ced6-4ccf-93b9-ccd5b94c4403 be94e7e3b2d8bd6873b2566a89782e2d { 'aliquot_tag': 'ALQ_57be032d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01946.RNA-Seq.genomic.A.hg38 C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 55f2f99e-8029-4dc7-aaf8-bc867a5f4ea2.rna_seq.genomic.gdc_realn.bam 7926979078 BAM genomic harmonized CPTAC3 55648c01-e95b-4a65-9ff4-6a69951fe304 d7d3c3632bcbd17b6a2a5d7b806b8750 { 'aliquot_tag': 'ALQ_fa61370c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01946.RNA-Seq.genomic.T.hg38 C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 862dc37a-950a-4147-9728-17b57730ef2e.rna_seq.genomic.gdc_realn.bam 8618004500 BAM genomic harmonized CPTAC3 2c12c9af-7a22-4902-9dd6-9791acd4d7b6 b971f141643a493d4a00e5c74cdd4e0c { 'aliquot_tag': 'ALQ_57be032d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01946.RNA-Seq.R1_L004.A C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 190215_UNC32-K00270_0147_AH3VGHBBXY_ATGTCA_S13_L004_R1_001.fastq.gz 3945942467 FASTQ R1_L004 unaligned CPTAC3 a285fcf1-9433-4838-8e18-5b7ccc18fb9c f9e3461ff12ef5e81ba9e335bd899c17 { 'aliquot_tag': 'ALQ_fa61370c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01946.RNA-Seq.R1_L008.T C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3961254197 FASTQ R1_L008 unaligned CPTAC3 4bef631b-a878-4d66-8e2f-6ff73688b407 b0b49801bc3a97d4ed25a191bdfebadd { 'aliquot_tag': 'ALQ_57be032d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01946.RNA-Seq.R2_L004.A C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 190215_UNC32-K00270_0147_AH3VGHBBXY_ATGTCA_S13_L004_R2_001.fastq.gz 4297857904 FASTQ R2_L004 unaligned CPTAC3 8d3692b0-d5ff-4d77-9fde-91092760a0f7 afa78feb14f01dd122344d6c8b3b9f0e { 'aliquot_tag': 'ALQ_fa61370c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01946.RNA-Seq.R2_L008.T C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 4389235898 FASTQ R2_L008 unaligned CPTAC3 7a0b9a04-7dbd-4621-bd40-5c0b3a812c27 94519e842427eb56f6d19516a00680da { 'aliquot_tag': 'ALQ_57be032d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01946.RNA-Seq.genomic.A.hg38 C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 55f2f99e-8029-4dc7-aaf8-bc867a5f4ea2.rna_seq.genomic.gdc_realn.bam 7926979078 BAM genomic harmonized CPTAC3 9c6c9de1-2716-4a8d-9457-b25b09612294 d7d3c3632bcbd17b6a2a5d7b806b8750 { 'aliquot_tag': 'ALQ_fa61370c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01946.RNA-Seq.genomic.T.hg38 C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 862dc37a-950a-4147-9728-17b57730ef2e.rna_seq.genomic.gdc_realn.bam 8618004500 BAM genomic harmonized CPTAC3 143366f3-a628-42e0-b2a6-03c1942e7567 b971f141643a493d4a00e5c74cdd4e0c { 'aliquot_tag': 'ALQ_57be032d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01946.RNA-Seq.R1_L004.A C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 190215_UNC32-K00270_0147_AH3VGHBBXY_ATGTCA_S13_L004_R1_001.fastq.gz 3945942467 FASTQ R1_L004 unaligned CPTAC3 a285fcf1-9433-4838-8e18-5b7ccc18fb9c f9e3461ff12ef5e81ba9e335bd899c17 { 'aliquot_tag': 'ALQ_fa61370c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01946.RNA-Seq.R1_L008.T C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3961254197 FASTQ R1_L008 unaligned CPTAC3 4bef631b-a878-4d66-8e2f-6ff73688b407 b0b49801bc3a97d4ed25a191bdfebadd { 'aliquot_tag': 'ALQ_57be032d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01946.RNA-Seq.R2_L004.A C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 190215_UNC32-K00270_0147_AH3VGHBBXY_ATGTCA_S13_L004_R2_001.fastq.gz 4297857904 FASTQ R2_L004 unaligned CPTAC3 8d3692b0-d5ff-4d77-9fde-91092760a0f7 afa78feb14f01dd122344d6c8b3b9f0e { 'aliquot_tag': 'ALQ_fa61370c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01946.RNA-Seq.R2_L008.T C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 190215_UNC32-K00270_0147_AH3VGHBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 4389235898 FASTQ R2_L008 unaligned CPTAC3 7a0b9a04-7dbd-4621-bd40-5c0b3a812c27 94519e842427eb56f6d19516a00680da { 'aliquot_tag': 'ALQ_57be032d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-01946.RNA-Seq.transcriptome.A.hg38 C3N-01946 HNSCC RNA-Seq tissue_normal CPT0163610006 55f2f99e-8029-4dc7-aaf8-bc867a5f4ea2.rna_seq.transcriptome.gdc_realn.bam 11125454531 BAM transcriptome harmonized CPTAC3 bd25bdf7-aaa9-46fb-91d5-825226344c6b df8c82e26ae7d496718290d0c24d74ad { 'aliquot_tag': 'ALQ_fa61370c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01946.RNA-Seq.transcriptome.T.hg38 C3N-01946 HNSCC RNA-Seq tumor CPT0163600009 862dc37a-950a-4147-9728-17b57730ef2e.rna_seq.transcriptome.gdc_realn.bam 11116238276 BAM transcriptome harmonized CPTAC3 01661503-be95-4951-aa50-39b0a87f6343 1bfe45477c04dd7751ec9e37e95c5440 { 'aliquot_tag': 'ALQ_57be032d', 'gdc_sample_type': 'Primary Tumor' } C3N-01946.WGS.N C3N-01946 HNSCC WGS blood_normal CPT0163640002 CPT0163640002.WholeGenome.RP-1303.bam 66088027627 BAM aligned CPTAC3 0a98bc63-79e5-4c0d-9534-3f3ffb72682d c185c5e9e18eeb047915bacc1ab3f6fc { 'aliquot_tag': 'ALQ_35ec7c65', 'gdc_sample_type': 'Blood Derived Normal' } @@ -28445,16 +30504,19 @@ C3N-01947.miRNA-Seq.T C3N-01947 HNSCC miRNA-Seq tumor CPT0226030009 190228_UNC32 C3N-01947.miRNA-Seq.T.hg38 C3N-01947 HNSCC miRNA-Seq tumor CPT0226030009 eaa8b65b-bd8e-4271-933b-2c2c617a546d_mirnaseq_gdc_realn.bam 334091792 BAM harmonized CPTAC3 0a16aae8-c5eb-4ec3-bdcd-7c754586fe43 72044d9522b02b26ecc0282f0d252a0d { 'aliquot_tag': 'ALQ_29b88778', 'gdc_sample_type': 'Primary Tumor' } C3N-01947.RNA-Seq.chimeric.A.hg38 C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 4d4602b3-cccf-494f-8c1b-abfb625790a3.rna_seq.chimeric.gdc_realn.bam 74641115 BAM chimeric harmonized CPTAC3 582945a7-1359-4d0f-8872-4be6ec1a56cd 7d97176b413b9134d3802b6d5ec612e5 { 'aliquot_tag': 'ALQ_63089fd9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01947.RNA-Seq.chimeric.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 97503e75-6590-43ff-bf8b-3c260dc9f1f6.rna_seq.chimeric.gdc_realn.bam 189925120 BAM chimeric harmonized CPTAC3 7f72bbc7-e655-4396-80b4-768815748dd0 ff2fe877d96c99999ae3f256b205b2e2 { 'aliquot_tag': 'ALQ_29b88778', 'gdc_sample_type': 'Primary Tumor' } -C3N-01947.RNA-Seq.genomic.A.hg38 C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 4d4602b3-cccf-494f-8c1b-abfb625790a3.rna_seq.genomic.gdc_realn.bam 9295755367 BAM genomic harmonized CPTAC3 82ee13c6-c9ec-4711-a6f3-1b85037dfbf2 ab55313ab24724a197757f62359adfbb { 'aliquot_tag': 'ALQ_63089fd9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01947.RNA-Seq.genomic.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 97503e75-6590-43ff-bf8b-3c260dc9f1f6.rna_seq.genomic.gdc_realn.bam 7756893982 BAM genomic harmonized CPTAC3 367ff6b9-b402-4b00-af6a-4d792e411fcf 17ea94ee5c3c4761eaaefb57fa6ff2d6 { 'aliquot_tag': 'ALQ_29b88778', 'gdc_sample_type': 'Primary Tumor' } -C3N-01947.RNA-Seq.R1_L004.A C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 190411_UNC31-K00269_0208_BH3W3KBBXY_CAAGCTAG-ACATAGCG_S20_L004_R1_001.fastq.gz 4514614104 FASTQ R1_L004 unaligned CPTAC3 ca3f3f40-2a1c-43fd-8acf-ecac3664de15 e03a435dc096200dec0b475bbf4e0ecb { 'aliquot_tag': 'ALQ_63089fd9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01947.RNA-Seq.R1_L007.T C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTTTCG_S9_L007_R1_001.fastq.gz 3553427117 FASTQ R1_L007 unaligned CPTAC3 4f5c86dc-d9e9-4143-8559-2f2aa8a0e91e b9d7ca70149836e3dbc82a493db3c230 { 'aliquot_tag': 'ALQ_29b88778', 'gdc_sample_type': 'Primary Tumor' } -C3N-01947.RNA-Seq.R1_.T C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 20210723_P2_G9_WB7988-plate2_S81_R1_001.fastq.gz 6855828658 FASTQ R1_ unaligned CPTAC3 14e1d23e-8f61-4178-ba06-3ef2be77ee67 6daab72f340870e6f55d3ee719030162 { 'aliquot_tag': 'ALQ_1a1e8ec1', 'gdc_sample_type': 'Primary Tumor' } -C3N-01947.RNA-Seq.R2_L004.A C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 190411_UNC31-K00269_0208_BH3W3KBBXY_CAAGCTAG-ACATAGCG_S20_L004_R2_001.fastq.gz 5046170026 FASTQ R2_L004 unaligned CPTAC3 91673d4f-c639-4c8d-9656-744ca4f63274 298886128322637af444bfb6a002bd68 { 'aliquot_tag': 'ALQ_63089fd9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01947.RNA-Seq.R2_L007.T C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTTTCG_S9_L007_R2_001.fastq.gz 4125349541 FASTQ R2_L007 unaligned CPTAC3 1c643fde-ac15-4035-8d06-d1417ae3c02c 20acdeba7718a75b0c55d4bc917653e0 { 'aliquot_tag': 'ALQ_29b88778', 'gdc_sample_type': 'Primary Tumor' } -C3N-01947.RNA-Seq.R2_.T C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 20210723_P2_G9_WB7988-plate2_S81_R2_001.fastq.gz 6980248291 FASTQ R2_ unaligned CPTAC3 659107b5-4ad8-4ada-89f9-6e73024c0a67 6188dce87cf11b70bb58d211f4141e94 { 'aliquot_tag': 'ALQ_1a1e8ec1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01947.RNA-Seq.chimeric.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 13f5d33f-2968-476f-a221-ec854cde98aa.rna_seq.chimeric.gdc_realn.bam 163855292 BAM chimeric harmonized CPTAC3 a550e5c1-5073-430c-8a7b-4c9f8359a09f 4a247b1a369027c214fd98445f344456 { 'aliquot_tag': 'ALQ_1a1e8ec1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01947.RNA-Seq.genomic.A.hg38 C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 4d4602b3-cccf-494f-8c1b-abfb625790a3.rna_seq.genomic.gdc_realn.bam 9295755367 BAM genomic harmonized CPTAC3 0445d0f1-fc4b-48f0-ab75-ace4e783adfa ab55313ab24724a197757f62359adfbb { 'aliquot_tag': 'ALQ_63089fd9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01947.RNA-Seq.genomic.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 97503e75-6590-43ff-bf8b-3c260dc9f1f6.rna_seq.genomic.gdc_realn.bam 7756893982 BAM genomic harmonized CPTAC3 2785a40f-d7fc-4245-8c0d-e64c26db338d 17ea94ee5c3c4761eaaefb57fa6ff2d6 { 'aliquot_tag': 'ALQ_29b88778', 'gdc_sample_type': 'Primary Tumor' } +C3N-01947.RNA-Seq.genomic.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 13f5d33f-2968-476f-a221-ec854cde98aa.rna_seq.genomic.gdc_realn.bam 11234328692 BAM genomic harmonized CPTAC3 c80e1b06-f572-438a-b50b-caca1aaa3f7f 4f09082684cb220eaab86c3c21f6cd64 { 'aliquot_tag': 'ALQ_1a1e8ec1', 'gdc_sample_type': 'Primary Tumor' } +C3N-01947.RNA-Seq.R1_L004.A C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 190411_UNC31-K00269_0208_BH3W3KBBXY_CAAGCTAG-ACATAGCG_S20_L004_R1_001.fastq.gz 4514614104 FASTQ R1_L004 unaligned CPTAC3 ca3f3f40-2a1c-43fd-8acf-ecac3664de15 e03a435dc096200dec0b475bbf4e0ecb { 'aliquot_tag': 'ALQ_63089fd9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01947.RNA-Seq.R1_L007.T C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTTTCG_S9_L007_R1_001.fastq.gz 3553427117 FASTQ R1_L007 unaligned CPTAC3 4f5c86dc-d9e9-4143-8559-2f2aa8a0e91e b9d7ca70149836e3dbc82a493db3c230 { 'aliquot_tag': 'ALQ_29b88778', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01947.RNA-Seq.R2_L004.A C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 190411_UNC31-K00269_0208_BH3W3KBBXY_CAAGCTAG-ACATAGCG_S20_L004_R2_001.fastq.gz 5046170026 FASTQ R2_L004 unaligned CPTAC3 91673d4f-c639-4c8d-9656-744ca4f63274 298886128322637af444bfb6a002bd68 { 'aliquot_tag': 'ALQ_63089fd9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01947.RNA-Seq.R2_L007.T C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTTTCG_S9_L007_R2_001.fastq.gz 4125349541 FASTQ R2_L007 unaligned CPTAC3 1c643fde-ac15-4035-8d06-d1417ae3c02c 20acdeba7718a75b0c55d4bc917653e0 { 'aliquot_tag': 'ALQ_29b88778', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01947.RNA-Seq.T C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 20210723_P2_G9_WB7988-plate2_S81_R1_001.fastq.gz 6855828658 FASTQ unaligned CPTAC3 14e1d23e-8f61-4178-ba06-3ef2be77ee67 6daab72f340870e6f55d3ee719030162 +C3N-01947.RNA-Seq.T C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 20210723_P2_G9_WB7988-plate2_S81_R2_001.fastq.gz 6980248291 FASTQ unaligned CPTAC3 659107b5-4ad8-4ada-89f9-6e73024c0a67 6188dce87cf11b70bb58d211f4141e94 C3N-01947.RNA-Seq.transcriptome.A.hg38 C3N-01947 HNSCC RNA-Seq tissue_normal CPT0226090009 4d4602b3-cccf-494f-8c1b-abfb625790a3.rna_seq.transcriptome.gdc_realn.bam 13270113918 BAM transcriptome harmonized CPTAC3 a015852f-6dda-448a-8754-fa9163ed2f87 6919a97b4001eb504ec94938fdb49aa6 { 'aliquot_tag': 'ALQ_63089fd9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01947.RNA-Seq.transcriptome.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0226030009 97503e75-6590-43ff-bf8b-3c260dc9f1f6.rna_seq.transcriptome.gdc_realn.bam 10844854391 BAM transcriptome harmonized CPTAC3 b7db540a-067a-458d-bccc-5584e91f777e e973aedb591e39245817019505bdc446 { 'aliquot_tag': 'ALQ_29b88778', 'gdc_sample_type': 'Primary Tumor' } +C3N-01947.RNA-Seq.transcriptome.T.hg38 C3N-01947 HNSCC RNA-Seq tumor CPT0320530011 13f5d33f-2968-476f-a221-ec854cde98aa.rna_seq.transcriptome.gdc_realn.bam 6690276127 BAM transcriptome harmonized CPTAC3 5aceb83d-37a2-4b39-a697-0a6037dc5145 5f7750651c6d788297128347136ea937 { 'aliquot_tag': 'ALQ_1a1e8ec1', 'gdc_sample_type': 'Primary Tumor' } C3N-01947.WGS.N C3N-01947 HNSCC WGS blood_normal CPT0226120002 CPT0226120002.WholeGenome.RP-1303.bam 71999240052 BAM aligned CPTAC3 cee9e59d-7d3e-4bd9-acbd-7855603bedc8 1ca2005ae0f1612faf5ee30368035046 { 'aliquot_tag': 'ALQ_4856a4e5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01947.WGS.N.hg38 C3N-01947 HNSCC WGS blood_normal CPT0226120002 38f4020d-3686-4770-b2b0-8fe846b0ea68_wgs_gdc_realn.bam 104976381395 BAM harmonized CPTAC3 3eb615ce-5721-46ad-b191-b45e612e7ff0 ef4b9aceca029b63730012ce3cfcccd5 { 'aliquot_tag': 'ALQ_4856a4e5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01947.WGS.T C3N-01947 HNSCC WGS tumor CPT0226030006 CPT0226030006.WholeGenome.RP-1303.bam 81844887395 BAM aligned CPTAC3 082b1a05-87f4-49d0-a1a3-21e88e31cc87 7806d1559656bd7c087a34094164941a { 'aliquot_tag': 'ALQ_b9079ae9', 'gdc_sample_type': 'Primary Tumor' } @@ -28473,16 +30535,19 @@ C3N-01948.miRNA-Seq.T C3N-01948 HNSCC miRNA-Seq tumor CPT0163650009 190228_UNC32 C3N-01948.miRNA-Seq.T.hg38 C3N-01948 HNSCC miRNA-Seq tumor CPT0163650009 5809c33b-a2de-422e-9146-1660a1c53afa_mirnaseq_gdc_realn.bam 263763481 BAM harmonized CPTAC3 f5068888-22f1-45a0-a30d-0d2dde2c04e6 2c17d8a226178a3bbfd4766b99e1be19 { 'aliquot_tag': 'ALQ_9f5e8c5d', 'gdc_sample_type': 'Primary Tumor' } C3N-01948.RNA-Seq.chimeric.A.hg38 C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 ecccec14-5846-41f9-a741-e7d709409245.rna_seq.chimeric.gdc_realn.bam 104607426 BAM chimeric harmonized CPTAC3 264111fb-a67f-44f0-973a-6c6789a257f7 ef5060daf80b244f3c2a92e62808c84c { 'aliquot_tag': 'ALQ_7521c2ac', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01948.RNA-Seq.chimeric.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 405f682f-93c7-4211-8364-2d81918c46bd.rna_seq.chimeric.gdc_realn.bam 224807968 BAM chimeric harmonized CPTAC3 1ed06c59-6e8c-4fd5-a1f2-d29d00cc8d8f ef6b0a9b02a367bc1ef1b9881ab87064 { 'aliquot_tag': 'ALQ_9f5e8c5d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01948.RNA-Seq.genomic.A.hg38 C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 ecccec14-5846-41f9-a741-e7d709409245.rna_seq.genomic.gdc_realn.bam 8273526545 BAM genomic harmonized CPTAC3 f7135557-18ec-4bed-b148-ce3132b13635 80109dc45dd14177229ad8d05d09aeaa { 'aliquot_tag': 'ALQ_7521c2ac', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01948.RNA-Seq.genomic.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 405f682f-93c7-4211-8364-2d81918c46bd.rna_seq.genomic.gdc_realn.bam 8584638397 BAM genomic harmonized CPTAC3 92f99d22-a2e2-4334-ba50-d7b3a5c8ace1 7606cd6c53c85af2a35d4c1915fba26c { 'aliquot_tag': 'ALQ_9f5e8c5d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01948.RNA-Seq.R1_L005.A C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 190215_UNC32-K00270_0147_AH3VGHBBXY_CCGTCC_S18_L005_R1_001.fastq.gz 4007961238 FASTQ R1_L005 unaligned CPTAC3 a57e46c4-1380-404f-bab0-d5b57b7b5d76 2e2f41f4263bc2170fb30fb0288e1f0e { 'aliquot_tag': 'ALQ_7521c2ac', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01948.RNA-Seq.R1_L008.T C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L008_R1_001.fastq.gz 4052088988 FASTQ R1_L008 unaligned CPTAC3 60cda52a-c7d2-4dcf-9b62-677ae7826510 27268a45a53d849abffbab9ab8ddabd5 { 'aliquot_tag': 'ALQ_9f5e8c5d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01948.RNA-Seq.R1_.T C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 20210714_P1_B8_WB7988_plate1_S20_R1_001.fastq.gz 6907483238 FASTQ R1_ unaligned CPTAC3 019d4f1f-6d01-4c35-8b50-7d3e6fca8a28 704dfec0abbc486bedaee48a1fea4dab { 'aliquot_tag': 'ALQ_2444eb26', 'gdc_sample_type': 'Primary Tumor' } -C3N-01948.RNA-Seq.R2_L005.A C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 190215_UNC32-K00270_0147_AH3VGHBBXY_CCGTCC_S18_L005_R2_001.fastq.gz 3945256743 FASTQ R2_L005 unaligned CPTAC3 bba9fb2f-9c78-4bd5-8b6e-ab7ff095854d 0b43ff5a1c0758f3db4adb6c1b988577 { 'aliquot_tag': 'ALQ_7521c2ac', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01948.RNA-Seq.R2_L008.T C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L008_R2_001.fastq.gz 4504314877 FASTQ R2_L008 unaligned CPTAC3 ff46082c-3142-4784-ac8f-225a494003ab 4f0b43e9824da100995fba67066a0ce7 { 'aliquot_tag': 'ALQ_9f5e8c5d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01948.RNA-Seq.R2_.T C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 20210714_P1_B8_WB7988_plate1_S20_R2_001.fastq.gz 7230206666 FASTQ R2_ unaligned CPTAC3 17773d4d-6dec-406b-8732-26a5c646cb61 2165bf5a6cf082bd2e92ffc60f43ac7f { 'aliquot_tag': 'ALQ_2444eb26', 'gdc_sample_type': 'Primary Tumor' } +C3N-01948.RNA-Seq.chimeric.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 a502e16d-da04-44e9-a1c8-27d2d45724d3.rna_seq.chimeric.gdc_realn.bam 225962716 BAM chimeric harmonized CPTAC3 bae17bdc-dc11-4bc2-9a2d-4b0334cdba96 2ba1c76215428bc2d578a069a6702370 { 'aliquot_tag': 'ALQ_2444eb26', 'gdc_sample_type': 'Primary Tumor' } +C3N-01948.RNA-Seq.genomic.A.hg38 C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 ecccec14-5846-41f9-a741-e7d709409245.rna_seq.genomic.gdc_realn.bam 8273526545 BAM genomic harmonized CPTAC3 7afa1ba4-960a-44ae-9933-47979b3ad769 80109dc45dd14177229ad8d05d09aeaa { 'aliquot_tag': 'ALQ_7521c2ac', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01948.RNA-Seq.genomic.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 405f682f-93c7-4211-8364-2d81918c46bd.rna_seq.genomic.gdc_realn.bam 8584638397 BAM genomic harmonized CPTAC3 8de44ddd-ce91-4239-834f-3f0235338bdc 7606cd6c53c85af2a35d4c1915fba26c { 'aliquot_tag': 'ALQ_9f5e8c5d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01948.RNA-Seq.genomic.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 a502e16d-da04-44e9-a1c8-27d2d45724d3.rna_seq.genomic.gdc_realn.bam 12787746414 BAM genomic harmonized CPTAC3 7840ca3c-439c-413a-bb52-7c36e3518812 ffe5f26c6948c596f3632c5707c8dcc7 { 'aliquot_tag': 'ALQ_2444eb26', 'gdc_sample_type': 'Primary Tumor' } +C3N-01948.RNA-Seq.R1_L005.A C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 190215_UNC32-K00270_0147_AH3VGHBBXY_CCGTCC_S18_L005_R1_001.fastq.gz 4007961238 FASTQ R1_L005 unaligned CPTAC3 a57e46c4-1380-404f-bab0-d5b57b7b5d76 2e2f41f4263bc2170fb30fb0288e1f0e { 'aliquot_tag': 'ALQ_7521c2ac', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-01948.RNA-Seq.R1_L008.T C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L008_R1_001.fastq.gz 4052088988 FASTQ R1_L008 unaligned CPTAC3 60cda52a-c7d2-4dcf-9b62-677ae7826510 27268a45a53d849abffbab9ab8ddabd5 { 'aliquot_tag': 'ALQ_9f5e8c5d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-01948.RNA-Seq.R2_L005.A C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 190215_UNC32-K00270_0147_AH3VGHBBXY_CCGTCC_S18_L005_R2_001.fastq.gz 3945256743 FASTQ R2_L005 unaligned CPTAC3 bba9fb2f-9c78-4bd5-8b6e-ab7ff095854d 0b43ff5a1c0758f3db4adb6c1b988577 { 'aliquot_tag': 'ALQ_7521c2ac', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-01948.RNA-Seq.R2_L008.T C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L008_R2_001.fastq.gz 4504314877 FASTQ R2_L008 unaligned CPTAC3 ff46082c-3142-4784-ac8f-225a494003ab 4f0b43e9824da100995fba67066a0ce7 { 'aliquot_tag': 'ALQ_9f5e8c5d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-01948.RNA-Seq.T C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 20210714_P1_B8_WB7988_plate1_S20_R1_001.fastq.gz 6907483238 FASTQ unaligned CPTAC3 019d4f1f-6d01-4c35-8b50-7d3e6fca8a28 704dfec0abbc486bedaee48a1fea4dab +C3N-01948.RNA-Seq.T C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 20210714_P1_B8_WB7988_plate1_S20_R2_001.fastq.gz 7230206666 FASTQ unaligned CPTAC3 17773d4d-6dec-406b-8732-26a5c646cb61 2165bf5a6cf082bd2e92ffc60f43ac7f C3N-01948.RNA-Seq.transcriptome.A.hg38 C3N-01948 HNSCC RNA-Seq tissue_normal CPT0163670006 ecccec14-5846-41f9-a741-e7d709409245.rna_seq.transcriptome.gdc_realn.bam 10166956283 BAM transcriptome harmonized CPTAC3 994cebdd-e1e4-4243-bb17-0ffcf4eb4f2a f0fde2b2515355814bc06df6733b0dd9 { 'aliquot_tag': 'ALQ_7521c2ac', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01948.RNA-Seq.transcriptome.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0163650009 405f682f-93c7-4211-8364-2d81918c46bd.rna_seq.transcriptome.gdc_realn.bam 11628552054 BAM transcriptome harmonized CPTAC3 1573b5b9-7c82-41d4-b9aa-be80aaa9086b b47cdd1a332a4710dec7b3aeb900a1df { 'aliquot_tag': 'ALQ_9f5e8c5d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01948.RNA-Seq.transcriptome.T.hg38 C3N-01948 HNSCC RNA-Seq tumor CPT0315040011 a502e16d-da04-44e9-a1c8-27d2d45724d3.rna_seq.transcriptome.gdc_realn.bam 7213530941 BAM transcriptome harmonized CPTAC3 206cb42e-9d2d-4230-ae2d-607a507807bc 7d36e044250637d992fe5a1de815c2a1 { 'aliquot_tag': 'ALQ_2444eb26', 'gdc_sample_type': 'Primary Tumor' } C3N-01948.WGS.N C3N-01948 HNSCC WGS blood_normal CPT0163710002 CPT0163710002.WholeGenome.RP-1303.bam 55796566408 BAM aligned CPTAC3 ca5d1588-46c2-4b55-a902-43ef3a6273ef a1c600e5acce5f5b9754065ebcaa2ab3 { 'aliquot_tag': 'ALQ_365020b0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01948.WGS.N.hg38 C3N-01948 HNSCC WGS blood_normal CPT0163710002 b04281f0-de7e-4330-b977-5149689f34ef_wgs_gdc_realn.bam 81701256504 BAM harmonized CPTAC3 4382318b-b7f8-4457-9641-07a9c232e427 b9e2368ee3e5603bbf8116ed7fe89fb6 { 'aliquot_tag': 'ALQ_365020b0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01948.WGS.T C3N-01948 HNSCC WGS tumor CPT0163650006 CPT0163650006.WholeGenome.RP-1303.bam 86251464852 BAM aligned CPTAC3 9ff79dda-7cb6-4f15-ba73-734b876883c5 771a8f4c06dbd1ee81c8766400874b40 { 'aliquot_tag': 'ALQ_fe191cc', 'gdc_sample_type': 'Primary Tumor' } @@ -28497,16 +30562,16 @@ C3N-01989.miRNA-Seq.A C3N-01989 CCRCC miRNA-Seq tissue_normal CPT0112240007 1901 C3N-01989.miRNA-Seq.A.hg38 C3N-01989 CCRCC miRNA-Seq tissue_normal CPT0112240007 c460ed67-37a9-4fb7-ba48-29bc6f30354f_mirnaseq_gdc_realn.bam 233743845 BAM harmonized CPTAC3 0fc3bbb6-cb51-4c01-adb1-8401463ffcb9 1a169d75e72748e33af770f803ced298 { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01989.miRNA-Seq.T C3N-01989 CCRCC miRNA-Seq tumor CPT0112230006 190108_UNC31-K00269_0176_AHYGLVBBXX_CCGTCC_S16_L002_R1_001.unaln.bam 238785987 BAM unaligned CPTAC3 a9822ad8-0fd0-492d-bf9d-a48ab3c32bdb 7c5c38adbf0f4c7fe229759e4e780111 { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor' } C3N-01989.miRNA-Seq.T.hg38 C3N-01989 CCRCC miRNA-Seq tumor CPT0112230006 af52fa65-4ad7-4882-bb42-0764f896a3b9_mirnaseq_gdc_realn.bam 265616704 BAM harmonized CPTAC3 546fbc91-f7a6-44b3-a44d-66e143261877 e2e50a5842d7fd4544dcecfa9b814879 { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01989.RNA-Seq.chimeric.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 68474e0a-e9bc-4834-aa82-f2cae155c101.rna_seq.chimeric.gdc_realn.bam 35273971 BAM chimeric harmonized CPTAC3 9bc928b2-4aa2-472c-9c75-bd2443fb0121 d9813b32c9997802c6e524e63f128c19 { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01989.RNA-Seq.chimeric.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 e08830e2-bc6d-42e8-8bfb-12c6a80e564a.rna_seq.chimeric.gdc_realn.bam 36082328 BAM chimeric harmonized CPTAC3 1905f5d5-ec91-4080-a3e8-326c9464ee75 2865431e03069486d9f43c89dd597559 { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01989.RNA-Seq.genomic.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 68474e0a-e9bc-4834-aa82-f2cae155c101.rna_seq.genomic.gdc_realn.bam 8888345735 BAM genomic harmonized CPTAC3 6d27d5e5-5ae6-443d-a832-8b1ced61007f f73f41bd2f8a681f1eb19162dde7af3d { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01989.RNA-Seq.genomic.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 e08830e2-bc6d-42e8-8bfb-12c6a80e564a.rna_seq.genomic.gdc_realn.bam 8443138263 BAM genomic harmonized CPTAC3 ec5cde49-db0e-441a-833d-bfbba7663490 195b02e56d65c134ecc170c7247b0e45 { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01989.RNA-Seq.R1_L007.T C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L007_R1_001.fastq.gz 3924002741 FASTQ R1_L007 unaligned CPTAC3 f5421d66-b130-4b37-9c56-a4b630cf8b1f f7e0b608137fe2f892dfd71bb3e4866f { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01989.RNA-Seq.R1_L008.A C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 190104_UNC31-K00269_0175_BH32LHBBXY_ATTCCT_S79_L008_R1_001.fastq.gz 4159245734 FASTQ R1_L008 unaligned CPTAC3 7dc76f2e-e4fe-48ed-ac8d-046863cb0071 825d1aa9e472abd5d249442fdcbc809e { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01989.RNA-Seq.R2_L007.T C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L007_R2_001.fastq.gz 4045843004 FASTQ R2_L007 unaligned CPTAC3 994ac653-5dea-46a6-8d78-5df97a55295a 49c6fd0595f34247326317a34a4e9b12 { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-01989.RNA-Seq.R2_L008.A C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 190104_UNC31-K00269_0175_BH32LHBBXY_ATTCCT_S79_L008_R2_001.fastq.gz 4333735532 FASTQ R2_L008 unaligned CPTAC3 775bd14f-1502-47bb-93aa-e9fa6b4e8907 d079d0483e80f2fb25070aff48c318e3 { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01989.RNA-Seq.transcriptome.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 68474e0a-e9bc-4834-aa82-f2cae155c101.rna_seq.transcriptome.gdc_realn.bam 9376369742 BAM transcriptome harmonized CPTAC3 4045fbf5-39ff-4214-9d87-31319974c3f0 3726912d09e376f67c52e5ace34d202d { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01989.RNA-Seq.transcriptome.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 e08830e2-bc6d-42e8-8bfb-12c6a80e564a.rna_seq.transcriptome.gdc_realn.bam 9308526744 BAM transcriptome harmonized CPTAC3 03c1f1c1-df93-4ec6-b522-7bde34e4e57b c88259eda5e75fceaaea672744c7c282 { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01989.RNA-Seq.chimeric.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 e90e482a-beca-4f4e-b703-ab88de0db5ff.rna_seq.chimeric.gdc_realn.bam 35258362 BAM chimeric harmonized CPTAC3 42c9fcff-a5f0-465a-b019-7a44aa64fcf0 1aceb3f34730f1653ce46ab358c1cbef { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01989.RNA-Seq.chimeric.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 629b31b7-d654-4c42-a356-132904ed2a18.rna_seq.chimeric.gdc_realn.bam 36056168 BAM chimeric harmonized CPTAC3 e942654d-3c0e-4bca-88f4-2a31003c365d 10c09702411ec317364c10b369e2e2d3 { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01989.RNA-Seq.genomic.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 e90e482a-beca-4f4e-b703-ab88de0db5ff.rna_seq.genomic.gdc_realn.bam 8889351115 BAM genomic harmonized CPTAC3 140827a1-f22b-4753-b426-a759f8f00446 8c1f5c81a504b59313fe3eb9f8dd7b4c { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01989.RNA-Seq.genomic.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 629b31b7-d654-4c42-a356-132904ed2a18.rna_seq.genomic.gdc_realn.bam 8444396734 BAM genomic harmonized CPTAC3 75d6875e-b81c-449a-83e3-7845960b4b0b c4ef769ae833f34692a4f3002f92505a { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor' } +C3N-01989.RNA-Seq.R1_L007.T C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L007_R1_001.fastq.gz 3924002741 FASTQ R1_L007 unaligned CPTAC3 f5421d66-b130-4b37-9c56-a4b630cf8b1f f7e0b608137fe2f892dfd71bb3e4866f { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01989.RNA-Seq.R1_L008.A C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 190104_UNC31-K00269_0175_BH32LHBBXY_ATTCCT_S79_L008_R1_001.fastq.gz 4159245734 FASTQ R1_L008 unaligned CPTAC3 7dc76f2e-e4fe-48ed-ac8d-046863cb0071 825d1aa9e472abd5d249442fdcbc809e { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-01989.RNA-Seq.R2_L007.T C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L007_R2_001.fastq.gz 4045843004 FASTQ R2_L007 unaligned CPTAC3 994ac653-5dea-46a6-8d78-5df97a55295a 49c6fd0595f34247326317a34a4e9b12 { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-01989.RNA-Seq.R2_L008.A C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 190104_UNC31-K00269_0175_BH32LHBBXY_ATTCCT_S79_L008_R2_001.fastq.gz 4333735532 FASTQ R2_L008 unaligned CPTAC3 775bd14f-1502-47bb-93aa-e9fa6b4e8907 d079d0483e80f2fb25070aff48c318e3 { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-01989.RNA-Seq.transcriptome.A.hg38 C3N-01989 CCRCC RNA-Seq tissue_normal CPT0112240007 e90e482a-beca-4f4e-b703-ab88de0db5ff.rna_seq.transcriptome.gdc_realn.bam 10781865834 BAM transcriptome harmonized CPTAC3 fabc744e-5585-4e3a-a72e-6f0c29a01701 d643ae59fb540c55ef18bc133d9db073 { 'aliquot_tag': 'ALQ_72a5c851', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-01989.RNA-Seq.transcriptome.T.hg38 C3N-01989 CCRCC RNA-Seq tumor CPT0112230006 629b31b7-d654-4c42-a356-132904ed2a18.rna_seq.transcriptome.gdc_realn.bam 10523642081 BAM transcriptome harmonized CPTAC3 558c972f-8c3e-4869-b2ce-ae89bedc6b2f 3c65ad35b0222eb1f2cbed8bb2571809 { 'aliquot_tag': 'ALQ_b78224d7', 'gdc_sample_type': 'Primary Tumor' } C3N-01989.WGS.N C3N-01989 CCRCC WGS blood_normal CPT0112340002 CPT0112340002.WholeGenome.RP-1303.bam 62727726879 BAM aligned CPTAC3 2d5b16d3-0c8a-4c80-8211-7a99c8f5eef7 27706cd5e8be436532fcc31ce797ff77 { 'aliquot_tag': 'ALQ_c993ef7b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01989.WGS.N.hg38 C3N-01989 CCRCC WGS blood_normal CPT0112340002 696e360d-4ead-4cec-bc8a-323b5e6cb854_wgs_gdc_realn.bam 89811356772 BAM harmonized CPTAC3 9d3b1a82-148a-459b-b73a-e9d436adc5bc 7ac747a3506ff4799579df94e0eee7cc { 'aliquot_tag': 'ALQ_c993ef7b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-01989.WGS.T C3N-01989 CCRCC WGS tumor CPT0112230009 CPT0112230009.WholeGenome.RP-1303.bam 79636519444 BAM aligned CPTAC3 6c876119-7180-4873-bd0c-0867630ccc55 85f6f872494391b3a02324b42a0865c3 { 'aliquot_tag': 'ALQ_273d3946', 'gdc_sample_type': 'Primary Tumor' } @@ -28522,9 +30587,9 @@ C3N-01997.MethArray.Red.T C3N-01997 PDA Methylation Array tumor CPT0138900010 20 C3N-01997.miRNA-Seq.T C3N-01997 PDA miRNA-Seq tumor CPT0138900007 181108_UNC31-K00269_0162_AH255GBBXY_CACTCA_S8_L001_R1_001.unaln.bam 161987937 BAM unaligned CPTAC3 f5d212e4-e0fd-4096-9fb7-2c96d4b77bf1 20cd172262dcc771ecf6047fe545929c { 'aliquot_tag': 'ALQ_bb7c661', 'gdc_sample_type': 'Primary Tumor' } C3N-01997.miRNA-Seq.T.hg38 C3N-01997 PDA miRNA-Seq tumor CPT0138900007 405a77a1-3f89-43bc-aa70-9e2279a3f535_mirnaseq_gdc_realn.bam 182314514 BAM harmonized CPTAC3 58b5b8be-c1bd-4f07-84fa-f2b6da9e9f78 e047b91533d8938eaf6bc3cd87ee65f4 { 'aliquot_tag': 'ALQ_bb7c661', 'gdc_sample_type': 'Primary Tumor' } C3N-01997.RNA-Seq.chimeric.T.hg38 C3N-01997 PDA RNA-Seq tumor CPT0138900007 9186da22-39d5-4113-bca1-02eae0f8b0d9.rna_seq.chimeric.gdc_realn.bam 90319347 BAM chimeric harmonized CPTAC3 cfe0f701-ab43-46c1-81f2-f62ee4aebb28 9be61252a22a0a307c8327b382ceffc7 { 'aliquot_tag': 'ALQ_bb7c661', 'gdc_sample_type': 'Primary Tumor' } -C3N-01997.RNA-Seq.genomic.T.hg38 C3N-01997 PDA RNA-Seq tumor CPT0138900007 9186da22-39d5-4113-bca1-02eae0f8b0d9.rna_seq.genomic.gdc_realn.bam 8865089730 BAM genomic harmonized CPTAC3 1b1d6a21-4897-4f9e-91c9-e4d1ea222c1c 26ea44862876768aa23d8d0a43338647 { 'aliquot_tag': 'ALQ_bb7c661', 'gdc_sample_type': 'Primary Tumor' } -C3N-01997.RNA-Seq.R1_L007.T C3N-01997 PDA RNA-Seq tumor CPT0138900007 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L007_R1_001.fastq.gz 4007138952 FASTQ R1_L007 unaligned CPTAC3 177543fe-9718-4c49-bb13-0ec3f60ed071 5c99557e2e1b1de313742ccf60852fc6 { 'aliquot_tag': 'ALQ_bb7c661', 'gdc_sample_type': 'Primary Tumor' } -C3N-01997.RNA-Seq.R2_L007.T C3N-01997 PDA RNA-Seq tumor CPT0138900007 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L007_R2_001.fastq.gz 4453037870 FASTQ R2_L007 unaligned CPTAC3 f4c37175-17fd-4651-a5f0-fa665eb50b0c c535d62eedc0365628fc91a957bc2bb4 { 'aliquot_tag': 'ALQ_bb7c661', 'gdc_sample_type': 'Primary Tumor' } +C3N-01997.RNA-Seq.genomic.T.hg38 C3N-01997 PDA RNA-Seq tumor CPT0138900007 9186da22-39d5-4113-bca1-02eae0f8b0d9.rna_seq.genomic.gdc_realn.bam 8865089730 BAM genomic harmonized CPTAC3 1e76776e-0234-4132-ac80-b02e2ef66464 26ea44862876768aa23d8d0a43338647 { 'aliquot_tag': 'ALQ_bb7c661', 'gdc_sample_type': 'Primary Tumor' } +C3N-01997.RNA-Seq.R1_L007.T C3N-01997 PDA RNA-Seq tumor CPT0138900007 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L007_R1_001.fastq.gz 4007138952 FASTQ R1_L007 unaligned CPTAC3 177543fe-9718-4c49-bb13-0ec3f60ed071 5c99557e2e1b1de313742ccf60852fc6 { 'aliquot_tag': 'ALQ_bb7c661', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01997.RNA-Seq.R2_L007.T C3N-01997 PDA RNA-Seq tumor CPT0138900007 180516_UNC31-K00269_0129_AHTWLFBBXX_ACTTGA_S7_L007_R2_001.fastq.gz 4453037870 FASTQ R2_L007 unaligned CPTAC3 f4c37175-17fd-4651-a5f0-fa665eb50b0c c535d62eedc0365628fc91a957bc2bb4 { 'aliquot_tag': 'ALQ_bb7c661', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01997.RNA-Seq.transcriptome.T.hg38 C3N-01997 PDA RNA-Seq tumor CPT0138900007 9186da22-39d5-4113-bca1-02eae0f8b0d9.rna_seq.transcriptome.gdc_realn.bam 11581207585 BAM transcriptome harmonized CPTAC3 38e11053-6ce6-4e5d-8490-10273cef6bee 628880922a78d503041e17b80b86383e { 'aliquot_tag': 'ALQ_bb7c661', 'gdc_sample_type': 'Primary Tumor' } C3N-01997.WGS.A C3N-01997 PDA WGS tissue_normal CPT0138890006 CPT0138890006.WholeGenome.RP-1303.bam 67950812923 BAM aligned CPTAC3 2a4e4309-037a-4d92-9fbb-bf9dbca0df14 770540fb88ba4c8b8143c421057e2585 { 'aliquot_tag': 'ALQ_bafc4723', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01997.WGS.A.hg38 C3N-01997 PDA WGS tissue_normal CPT0138890006 843ad039-ed5b-423c-8328-51d2f31f1610_wgs_gdc_realn.bam 99385300021 BAM harmonized CPTAC3 0c39a9c7-eaa2-4948-9a7c-4db2b3ddfb87 88d9abae08842b64e0eaadd82e3ba52d { 'aliquot_tag': 'ALQ_bafc4723', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -28554,10 +30619,10 @@ C3N-01998.RNA-Seq.chimeric.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal CPT0138990 C3N-01998.RNA-Seq.chimeric.T.hg38 C3N-01998 PDA RNA-Seq tumor CPT0139000007 50a64961-555e-4f65-9eed-e4531ead35ac.rna_seq.chimeric.gdc_realn.bam 51019455 BAM chimeric harmonized CPTAC3 1f4bd9be-f7a6-478e-9712-638685bb6e13 45708f595856777771d87710ae1aa2ac { 'aliquot_tag': 'ALQ_8acf9c1d', 'gdc_sample_type': 'Primary Tumor' } C3N-01998.RNA-Seq.genomic.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 37b1dcdc-151e-4661-a924-5040ed88b284.rna_seq.genomic.gdc_realn.bam 8377515544 BAM genomic harmonized CPTAC3 9e197a28-a818-42ca-85a5-44f25cda2b31 7106fe12e6ed3855fe39c6fb6181452b { 'aliquot_tag': 'ALQ_e11f8917', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01998.RNA-Seq.genomic.T.hg38 C3N-01998 PDA RNA-Seq tumor CPT0139000007 50a64961-555e-4f65-9eed-e4531ead35ac.rna_seq.genomic.gdc_realn.bam 8616965326 BAM genomic harmonized CPTAC3 783f6a9a-45d1-4e11-833f-77ec22cc54a9 0eb83df046f393f1b37f9d531fc6e093 { 'aliquot_tag': 'ALQ_8acf9c1d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01998.RNA-Seq.R1_L004.A C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTTTCG_S13_L004_R1_001.fastq.gz 3590086088 FASTQ R1_L004 unaligned CPTAC3 86882593-3b6f-4a79-af88-24a828c877a9 cb09c71ab525fc80712d5a5ef905d80d { 'aliquot_tag': 'ALQ_e11f8917', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01998.RNA-Seq.R1_L007.T C3N-01998 PDA RNA-Seq tumor CPT0139000007 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L007_R1_001.fastq.gz 3750856780 FASTQ R1_L007 unaligned CPTAC3 d1e65a39-cf9b-4325-b009-467c2a0764db 336bef345f6405f22d6a86ff82b78e0e { 'aliquot_tag': 'ALQ_8acf9c1d', 'gdc_sample_type': 'Primary Tumor' } -C3N-01998.RNA-Seq.R2_L004.A C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTTTCG_S13_L004_R2_001.fastq.gz 4051862046 FASTQ R2_L004 unaligned CPTAC3 71c59940-7c95-484e-b602-535c759dc5aa c4fc725ea5575e5f12be43e0af38d3d9 { 'aliquot_tag': 'ALQ_e11f8917', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-01998.RNA-Seq.R2_L007.T C3N-01998 PDA RNA-Seq tumor CPT0139000007 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L007_R2_001.fastq.gz 4193596017 FASTQ R2_L007 unaligned CPTAC3 509ab320-ebd9-47c5-9b16-df56783528ff ba1bb873efb210207f2bf1c03d342be3 { 'aliquot_tag': 'ALQ_8acf9c1d', 'gdc_sample_type': 'Primary Tumor' } +C3N-01998.RNA-Seq.R1_L004.A C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTTTCG_S13_L004_R1_001.fastq.gz 3590086088 FASTQ R1_L004 unaligned CPTAC3 86882593-3b6f-4a79-af88-24a828c877a9 cb09c71ab525fc80712d5a5ef905d80d { 'aliquot_tag': 'ALQ_e11f8917', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-01998.RNA-Seq.R1_L007.T C3N-01998 PDA RNA-Seq tumor CPT0139000007 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L007_R1_001.fastq.gz 3750856780 FASTQ R1_L007 unaligned CPTAC3 d1e65a39-cf9b-4325-b009-467c2a0764db 336bef345f6405f22d6a86ff82b78e0e { 'aliquot_tag': 'ALQ_8acf9c1d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-01998.RNA-Seq.R2_L004.A C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 180516_UNC31-K00269_0129_AHTWLFBBXX_GTTTCG_S13_L004_R2_001.fastq.gz 4051862046 FASTQ R2_L004 unaligned CPTAC3 71c59940-7c95-484e-b602-535c759dc5aa c4fc725ea5575e5f12be43e0af38d3d9 { 'aliquot_tag': 'ALQ_e11f8917', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-01998.RNA-Seq.R2_L007.T C3N-01998 PDA RNA-Seq tumor CPT0139000007 180516_UNC31-K00269_0129_AHTWLFBBXX_GATCAG_S3_L007_R2_001.fastq.gz 4193596017 FASTQ R2_L007 unaligned CPTAC3 509ab320-ebd9-47c5-9b16-df56783528ff ba1bb873efb210207f2bf1c03d342be3 { 'aliquot_tag': 'ALQ_8acf9c1d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-01998.RNA-Seq.transcriptome.A.hg38 C3N-01998 PDA RNA-Seq tissue_normal CPT0138990009 37b1dcdc-151e-4661-a924-5040ed88b284.rna_seq.transcriptome.gdc_realn.bam 10253991590 BAM transcriptome harmonized CPTAC3 9ccc9971-edf6-4d30-96a6-6a8a87281b5d b136f065cc8850331175160909aa04fb { 'aliquot_tag': 'ALQ_e11f8917', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-01998.RNA-Seq.transcriptome.T.hg38 C3N-01998 PDA RNA-Seq tumor CPT0139000007 50a64961-555e-4f65-9eed-e4531ead35ac.rna_seq.transcriptome.gdc_realn.bam 11220259980 BAM transcriptome harmonized CPTAC3 d484bd6d-488c-47b7-9dab-115af95ba638 d8ed1b3d88ca139ae62463f4b6f7f5cb { 'aliquot_tag': 'ALQ_8acf9c1d', 'gdc_sample_type': 'Primary Tumor' } C3N-01998.WGS.A C3N-01998 PDA WGS tissue_normal CPT0138990006 CPT0138990006.WholeGenome.RP-1303.bam 64994527820 BAM aligned CPTAC3 4e574a51-05a5-4942-b116-a8d01cdabfd0 dec62d179c980690e7e224c02db79002 { 'aliquot_tag': 'ALQ_71a09486', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -28586,12 +30651,12 @@ C3N-02000.miRNA-Seq.T C3N-02000 LUAD miRNA-Seq tumor CPT0109680007 181108_UNC31- C3N-02000.miRNA-Seq.T.hg38 C3N-02000 LUAD miRNA-Seq tumor CPT0109680007 9ca4f23f-8523-42d9-b93a-1e0c091796d1_mirnaseq_gdc_realn.bam 269593261 BAM harmonized CPTAC3 3f574fda-4e4a-47c9-931b-3112252cb6f5 0d2b8437e5cb0e08fc69d52ca372e142 { 'aliquot_tag': 'ALQ_e2693322', 'gdc_sample_type': 'Primary Tumor' } C3N-02000.RNA-Seq.chimeric.A.hg38 C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 59122841-a03f-4d9e-8476-75111d15f353.rna_seq.chimeric.gdc_realn.bam 89346826 BAM chimeric harmonized CPTAC3 88752550-43aa-4b12-8a01-00afd6632bd1 771f2ae4d6a3fcd74aebf5e431d68c95 { 'aliquot_tag': 'ALQ_6e429bd0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02000.RNA-Seq.chimeric.T.hg38 C3N-02000 LUAD RNA-Seq tumor CPT0109680007 dd4c3aa6-090c-4e99-9d76-dba1201050fd.rna_seq.chimeric.gdc_realn.bam 114988995 BAM chimeric harmonized CPTAC3 d5f857bb-17c0-4609-8555-872340923125 a5f404cd2fed43500a5705889e4e254c { 'aliquot_tag': 'ALQ_e2693322', 'gdc_sample_type': 'Primary Tumor' } -C3N-02000.RNA-Seq.genomic.A.hg38 C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 59122841-a03f-4d9e-8476-75111d15f353.rna_seq.genomic.gdc_realn.bam 8529201356 BAM genomic harmonized CPTAC3 59438657-84d1-4bd4-b19a-c4f7098ac39c bcb3a7a8e6abbf29baa0e33136d03364 { 'aliquot_tag': 'ALQ_6e429bd0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02000.RNA-Seq.genomic.T.hg38 C3N-02000 LUAD RNA-Seq tumor CPT0109680007 dd4c3aa6-090c-4e99-9d76-dba1201050fd.rna_seq.genomic.gdc_realn.bam 8039236624 BAM genomic harmonized CPTAC3 bc8ced21-7457-41dd-a51b-69ad11ec45aa 1bcd8a58ce08069431ce1995845218c3 { 'aliquot_tag': 'ALQ_e2693322', 'gdc_sample_type': 'Primary Tumor' } -C3N-02000.RNA-Seq.R1_L003.A C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 180508_UNC31-K00269_0128_BHTY7KBBXX_GAGTGG_S11_L003_R1_001.fastq.gz 3992029558 FASTQ R1_L003 unaligned CPTAC3 c37e4ac2-6ec2-460f-b4da-7375234d3b7c 3be21ed43d687f56c4c585e39fc9fc81 { 'aliquot_tag': 'ALQ_6e429bd0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02000.RNA-Seq.R1_L008.T C3N-02000 LUAD RNA-Seq tumor CPT0109680007 180508_UNC31-K00269_0128_BHTY7KBBXX_TTAGGC_S24_L008_R1_001.fastq.gz 3640296272 FASTQ R1_L008 unaligned CPTAC3 e6350e07-5dfe-4e0a-bbe3-22d4d4beeec2 fb420b7574240cac064e0e91c7e41688 { 'aliquot_tag': 'ALQ_e2693322', 'gdc_sample_type': 'Primary Tumor' } -C3N-02000.RNA-Seq.R2_L003.A C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 180508_UNC31-K00269_0128_BHTY7KBBXX_GAGTGG_S11_L003_R2_001.fastq.gz 4357840440 FASTQ R2_L003 unaligned CPTAC3 7ba754f5-d88a-4e31-9093-866c2de14259 28bb9d5f4d0461fad336f2681430d2b6 { 'aliquot_tag': 'ALQ_6e429bd0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02000.RNA-Seq.R2_L008.T C3N-02000 LUAD RNA-Seq tumor CPT0109680007 180508_UNC31-K00269_0128_BHTY7KBBXX_TTAGGC_S24_L008_R2_001.fastq.gz 4074763701 FASTQ R2_L008 unaligned CPTAC3 580c4dd0-4763-4cbf-9905-fcf1ed0bcd5e f02d2c4cfc71b180e5252365044fe9f6 { 'aliquot_tag': 'ALQ_e2693322', 'gdc_sample_type': 'Primary Tumor' } +C3N-02000.RNA-Seq.genomic.A.hg38 C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 59122841-a03f-4d9e-8476-75111d15f353.rna_seq.genomic.gdc_realn.bam 8529201356 BAM genomic harmonized CPTAC3 90201214-4975-4d28-9383-a8fe7d6b03d2 bcb3a7a8e6abbf29baa0e33136d03364 { 'aliquot_tag': 'ALQ_6e429bd0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02000.RNA-Seq.genomic.T.hg38 C3N-02000 LUAD RNA-Seq tumor CPT0109680007 dd4c3aa6-090c-4e99-9d76-dba1201050fd.rna_seq.genomic.gdc_realn.bam 8039236624 BAM genomic harmonized CPTAC3 1c2e8c8f-f005-4b2b-be04-1593103cc521 1bcd8a58ce08069431ce1995845218c3 { 'aliquot_tag': 'ALQ_e2693322', 'gdc_sample_type': 'Primary Tumor' } +C3N-02000.RNA-Seq.R1_L003.A C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 180508_UNC31-K00269_0128_BHTY7KBBXX_GAGTGG_S11_L003_R1_001.fastq.gz 3992029558 FASTQ R1_L003 unaligned CPTAC3 c37e4ac2-6ec2-460f-b4da-7375234d3b7c 3be21ed43d687f56c4c585e39fc9fc81 { 'aliquot_tag': 'ALQ_6e429bd0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02000.RNA-Seq.R1_L008.T C3N-02000 LUAD RNA-Seq tumor CPT0109680007 180508_UNC31-K00269_0128_BHTY7KBBXX_TTAGGC_S24_L008_R1_001.fastq.gz 3640296272 FASTQ R1_L008 unaligned CPTAC3 e6350e07-5dfe-4e0a-bbe3-22d4d4beeec2 fb420b7574240cac064e0e91c7e41688 { 'aliquot_tag': 'ALQ_e2693322', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02000.RNA-Seq.R2_L003.A C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 180508_UNC31-K00269_0128_BHTY7KBBXX_GAGTGG_S11_L003_R2_001.fastq.gz 4357840440 FASTQ R2_L003 unaligned CPTAC3 7ba754f5-d88a-4e31-9093-866c2de14259 28bb9d5f4d0461fad336f2681430d2b6 { 'aliquot_tag': 'ALQ_6e429bd0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02000.RNA-Seq.R2_L008.T C3N-02000 LUAD RNA-Seq tumor CPT0109680007 180508_UNC31-K00269_0128_BHTY7KBBXX_TTAGGC_S24_L008_R2_001.fastq.gz 4074763701 FASTQ R2_L008 unaligned CPTAC3 580c4dd0-4763-4cbf-9905-fcf1ed0bcd5e f02d2c4cfc71b180e5252365044fe9f6 { 'aliquot_tag': 'ALQ_e2693322', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02000.RNA-Seq.transcriptome.A.hg38 C3N-02000 LUAD RNA-Seq tissue_normal CPT0109700006 59122841-a03f-4d9e-8476-75111d15f353.rna_seq.transcriptome.gdc_realn.bam 10236227622 BAM transcriptome harmonized CPTAC3 91b785b9-4222-4391-978c-5a15445b1fdb f6285b331c714d23c57d98b8c7fb3477 { 'aliquot_tag': 'ALQ_6e429bd0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02000.RNA-Seq.transcriptome.T.hg38 C3N-02000 LUAD RNA-Seq tumor CPT0109680007 dd4c3aa6-090c-4e99-9d76-dba1201050fd.rna_seq.transcriptome.gdc_realn.bam 9403704891 BAM transcriptome harmonized CPTAC3 ad2b6083-5162-4b0d-8d08-058fcff35707 d533a5e962310e22946c725648fb3032 { 'aliquot_tag': 'ALQ_e2693322', 'gdc_sample_type': 'Primary Tumor' } C3N-02000.WGS.A C3N-02000 LUAD WGS tissue_normal CPT0109700009 CPT0109700009.WholeGenome.RP-1303.bam 59122561060 BAM aligned CPTAC3 689d3c58-1f3a-4831-9314-7b4c1bb3ea2b 3d5d9ab75a83ea6d09753a7a88bf2409 { 'aliquot_tag': 'ALQ_fefd8641', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -28616,12 +30681,12 @@ C3N-02002.miRNA-Seq.T C3N-02002 LUAD miRNA-Seq tumor CPT0109720007 181108_UNC31- C3N-02002.miRNA-Seq.T.hg38 C3N-02002 LUAD miRNA-Seq tumor CPT0109720007 2c782365-b190-44b9-ba05-8ee554837849_mirnaseq_gdc_realn.bam 265867571 BAM harmonized CPTAC3 c2bd3557-e1d9-443e-894c-0e640ab5cd95 6ff0f3fbec24ebf1ae3daab30b338eac { 'aliquot_tag': 'ALQ_6385f826', 'gdc_sample_type': 'Primary Tumor' } C3N-02002.RNA-Seq.chimeric.A.hg38 C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 8fbc6645-891c-4e4f-993c-9ee76103a3fe.rna_seq.chimeric.gdc_realn.bam 91023579 BAM chimeric harmonized CPTAC3 e8b04cf0-42e0-4cc5-b609-1f3344814491 25e6a8cb284d95aca6c0cd3f3127df2a { 'aliquot_tag': 'ALQ_5322b260', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02002.RNA-Seq.chimeric.T.hg38 C3N-02002 LUAD RNA-Seq tumor CPT0109720007 380ab276-b140-4d81-abde-4cdf7fbe1971.rna_seq.chimeric.gdc_realn.bam 82932535 BAM chimeric harmonized CPTAC3 b30e112d-2e24-4955-b4cb-d2aae1aecdcf 6a5554f71efbb8881c8a5942df944e55 { 'aliquot_tag': 'ALQ_6385f826', 'gdc_sample_type': 'Primary Tumor' } -C3N-02002.RNA-Seq.genomic.A.hg38 C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 8fbc6645-891c-4e4f-993c-9ee76103a3fe.rna_seq.genomic.gdc_realn.bam 9285899422 BAM genomic harmonized CPTAC3 bab98fdb-3e9a-4df6-96b0-f2ae82d005a5 6937c5feeb3f06bf2fd13f10f85505bd { 'aliquot_tag': 'ALQ_5322b260', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02002.RNA-Seq.genomic.T.hg38 C3N-02002 LUAD RNA-Seq tumor CPT0109720007 380ab276-b140-4d81-abde-4cdf7fbe1971.rna_seq.genomic.gdc_realn.bam 8686356779 BAM genomic harmonized CPTAC3 a5cf2133-05fe-46d4-ae8f-9d839b7df0ed 6b6c125e27939783c1f72907528a5b29 { 'aliquot_tag': 'ALQ_6385f826', 'gdc_sample_type': 'Primary Tumor' } -C3N-02002.RNA-Seq.R1_L003.A C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4370224894 FASTQ R1_L003 unaligned CPTAC3 5be0e581-3faf-40f7-a539-5c6aca6d2953 35ab9d90ed1c5bf37e81d97cb247280b { 'aliquot_tag': 'ALQ_5322b260', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02002.RNA-Seq.R1_L008.T C3N-02002 LUAD RNA-Seq tumor CPT0109720007 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L008_R1_001.fastq.gz 4141056282 FASTQ R1_L008 unaligned CPTAC3 a49f1bb4-2dd1-4b43-ae04-dadfb5ba75bd 413047aded036e15ef4094e49f6f1cd3 { 'aliquot_tag': 'ALQ_6385f826', 'gdc_sample_type': 'Primary Tumor' } -C3N-02002.RNA-Seq.R2_L003.A C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4726117269 FASTQ R2_L003 unaligned CPTAC3 d94126c2-139a-4f55-8d9f-4a906574c49a 86c9f52d3bd8a36511ee9f47ef4946e0 { 'aliquot_tag': 'ALQ_5322b260', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02002.RNA-Seq.R2_L008.T C3N-02002 LUAD RNA-Seq tumor CPT0109720007 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L008_R2_001.fastq.gz 4509133766 FASTQ R2_L008 unaligned CPTAC3 7cf1758c-8452-4301-b81b-e42e6fbaa68f 42529f895aaa99892e07a5f46b88ff0b { 'aliquot_tag': 'ALQ_6385f826', 'gdc_sample_type': 'Primary Tumor' } +C3N-02002.RNA-Seq.genomic.A.hg38 C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 8fbc6645-891c-4e4f-993c-9ee76103a3fe.rna_seq.genomic.gdc_realn.bam 9285899422 BAM genomic harmonized CPTAC3 67bc95a4-02e8-4d2d-bb4e-d9bc52a83a1f 6937c5feeb3f06bf2fd13f10f85505bd { 'aliquot_tag': 'ALQ_5322b260', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02002.RNA-Seq.genomic.T.hg38 C3N-02002 LUAD RNA-Seq tumor CPT0109720007 380ab276-b140-4d81-abde-4cdf7fbe1971.rna_seq.genomic.gdc_realn.bam 8686356779 BAM genomic harmonized CPTAC3 5e831623-21a1-4c46-9930-05ebe168799b 6b6c125e27939783c1f72907528a5b29 { 'aliquot_tag': 'ALQ_6385f826', 'gdc_sample_type': 'Primary Tumor' } +C3N-02002.RNA-Seq.R1_L003.A C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTGAT_S10_L003_R1_001.fastq.gz 4370224894 FASTQ R1_L003 unaligned CPTAC3 5be0e581-3faf-40f7-a539-5c6aca6d2953 35ab9d90ed1c5bf37e81d97cb247280b { 'aliquot_tag': 'ALQ_5322b260', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02002.RNA-Seq.R1_L008.T C3N-02002 LUAD RNA-Seq tumor CPT0109720007 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L008_R1_001.fastq.gz 4141056282 FASTQ R1_L008 unaligned CPTAC3 a49f1bb4-2dd1-4b43-ae04-dadfb5ba75bd 413047aded036e15ef4094e49f6f1cd3 { 'aliquot_tag': 'ALQ_6385f826', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02002.RNA-Seq.R2_L003.A C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4726117269 FASTQ R2_L003 unaligned CPTAC3 d94126c2-139a-4f55-8d9f-4a906574c49a 86c9f52d3bd8a36511ee9f47ef4946e0 { 'aliquot_tag': 'ALQ_5322b260', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02002.RNA-Seq.R2_L008.T C3N-02002 LUAD RNA-Seq tumor CPT0109720007 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L008_R2_001.fastq.gz 4509133766 FASTQ R2_L008 unaligned CPTAC3 7cf1758c-8452-4301-b81b-e42e6fbaa68f 42529f895aaa99892e07a5f46b88ff0b { 'aliquot_tag': 'ALQ_6385f826', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02002.RNA-Seq.transcriptome.A.hg38 C3N-02002 LUAD RNA-Seq tissue_normal CPT0109710006 8fbc6645-891c-4e4f-993c-9ee76103a3fe.rna_seq.transcriptome.gdc_realn.bam 11278340213 BAM transcriptome harmonized CPTAC3 aa752f05-6d97-4399-b366-b48fb9029c73 0b475b3c9529c369f4a51edb285e9e18 { 'aliquot_tag': 'ALQ_5322b260', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02002.RNA-Seq.transcriptome.T.hg38 C3N-02002 LUAD RNA-Seq tumor CPT0109720007 380ab276-b140-4d81-abde-4cdf7fbe1971.rna_seq.transcriptome.gdc_realn.bam 10727001137 BAM transcriptome harmonized CPTAC3 c3ac46d6-f81e-4b2f-a8bd-d37717ca008c c7a01641cb74420cfb6de0d8e17c18c4 { 'aliquot_tag': 'ALQ_6385f826', 'gdc_sample_type': 'Primary Tumor' } C3N-02002.WGS.A C3N-02002 LUAD WGS tissue_normal CPT0109710009 CPT0109710009.WholeGenome.RP-1303.bam 58334265541 BAM aligned CPTAC3 63b06dc1-b736-4a76-981c-4affb7915d9d b308e0cce5d0807c40eaf4ad094495e7 { 'aliquot_tag': 'ALQ_c39daff1', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -28646,12 +30711,12 @@ C3N-02003.miRNA-Seq.T C3N-02003 LUAD miRNA-Seq tumor CPT0109740007 181108_UNC31- C3N-02003.miRNA-Seq.T.hg38 C3N-02003 LUAD miRNA-Seq tumor CPT0109740007 ef78f3d1-265d-4e1f-aca3-160f664f7d23_mirnaseq_gdc_realn.bam 209558794 BAM harmonized CPTAC3 98255690-02a8-4c2f-8ef2-70a90364e5c7 07817f05a0148e3776a7e42f8f0d3465 { 'aliquot_tag': 'ALQ_ecc50d86', 'gdc_sample_type': 'Primary Tumor' } C3N-02003.RNA-Seq.chimeric.A.hg38 C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 dd7aaa53-5a9b-4b91-9efd-7250b9d316cf.rna_seq.chimeric.gdc_realn.bam 62028412 BAM chimeric harmonized CPTAC3 2f3cab0e-98d0-48e4-9ae4-e8245f200c0a eba6867c1084f0855ea9eca663af6ea7 { 'aliquot_tag': 'ALQ_e1026e70', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02003.RNA-Seq.chimeric.T.hg38 C3N-02003 LUAD RNA-Seq tumor CPT0109740007 69fc1ee8-9ba6-4ef8-a5f2-cbe5853bb5e7.rna_seq.chimeric.gdc_realn.bam 93180467 BAM chimeric harmonized CPTAC3 307c5935-6c13-4dc9-9ed7-ef87f9a5dc2c 964a4247752bcdb31e3d3f66fd6baf52 { 'aliquot_tag': 'ALQ_ecc50d86', 'gdc_sample_type': 'Primary Tumor' } -C3N-02003.RNA-Seq.genomic.A.hg38 C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 dd7aaa53-5a9b-4b91-9efd-7250b9d316cf.rna_seq.genomic.gdc_realn.bam 8297119392 BAM genomic harmonized CPTAC3 43be6921-b09b-463e-97ea-37810ce9e47e 64c9ba77fc1de2290e63cd3c9d889eac { 'aliquot_tag': 'ALQ_e1026e70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02003.RNA-Seq.genomic.T.hg38 C3N-02003 LUAD RNA-Seq tumor CPT0109740007 69fc1ee8-9ba6-4ef8-a5f2-cbe5853bb5e7.rna_seq.genomic.gdc_realn.bam 6876537011 BAM genomic harmonized CPTAC3 7beeeba3-daf0-4a0d-a7bb-49382f4daa99 4909aeb0e775e84bcbf0097295329c76 { 'aliquot_tag': 'ALQ_ecc50d86', 'gdc_sample_type': 'Primary Tumor' } -C3N-02003.RNA-Seq.R1_L003.A C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATTCCT_S12_L003_R1_001.fastq.gz 3882852681 FASTQ R1_L003 unaligned CPTAC3 96a22aec-6a15-4edb-9bf7-027ac1e746e4 a4b114ee388f48ce375935e7c6acd57d { 'aliquot_tag': 'ALQ_e1026e70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02003.RNA-Seq.R1_L007.T C3N-02003 LUAD RNA-Seq tumor CPT0109740007 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L007_R1_001.fastq.gz 3160557380 FASTQ R1_L007 unaligned CPTAC3 ea62e60b-7213-4039-91e0-0e9c733117f2 4a54209ef1c8f72377582193d788af53 { 'aliquot_tag': 'ALQ_ecc50d86', 'gdc_sample_type': 'Primary Tumor' } -C3N-02003.RNA-Seq.R2_L003.A C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATTCCT_S12_L003_R2_001.fastq.gz 4216757340 FASTQ R2_L003 unaligned CPTAC3 c99083e8-6f5e-4516-999b-0236384c53e9 4024ab0d77240f0d8f8fe491dcbf5a03 { 'aliquot_tag': 'ALQ_e1026e70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02003.RNA-Seq.R2_L007.T C3N-02003 LUAD RNA-Seq tumor CPT0109740007 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L007_R2_001.fastq.gz 3493250359 FASTQ R2_L007 unaligned CPTAC3 9c13c469-3b06-4c2e-af20-2cbdcab055ed c2249ab3dff77fcc1019eb21f6b11b51 { 'aliquot_tag': 'ALQ_ecc50d86', 'gdc_sample_type': 'Primary Tumor' } +C3N-02003.RNA-Seq.genomic.A.hg38 C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 dd7aaa53-5a9b-4b91-9efd-7250b9d316cf.rna_seq.genomic.gdc_realn.bam 8297119392 BAM genomic harmonized CPTAC3 8e9fa53c-4a2d-4d98-9eee-c9787f3c0204 64c9ba77fc1de2290e63cd3c9d889eac { 'aliquot_tag': 'ALQ_e1026e70', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02003.RNA-Seq.genomic.T.hg38 C3N-02003 LUAD RNA-Seq tumor CPT0109740007 69fc1ee8-9ba6-4ef8-a5f2-cbe5853bb5e7.rna_seq.genomic.gdc_realn.bam 6876537011 BAM genomic harmonized CPTAC3 1ba44dd6-7052-4c99-a08a-1a33471f4e5c 4909aeb0e775e84bcbf0097295329c76 { 'aliquot_tag': 'ALQ_ecc50d86', 'gdc_sample_type': 'Primary Tumor' } +C3N-02003.RNA-Seq.R1_L003.A C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATTCCT_S12_L003_R1_001.fastq.gz 3882852681 FASTQ R1_L003 unaligned CPTAC3 96a22aec-6a15-4edb-9bf7-027ac1e746e4 a4b114ee388f48ce375935e7c6acd57d { 'aliquot_tag': 'ALQ_e1026e70', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02003.RNA-Seq.R1_L007.T C3N-02003 LUAD RNA-Seq tumor CPT0109740007 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L007_R1_001.fastq.gz 3160557380 FASTQ R1_L007 unaligned CPTAC3 ea62e60b-7213-4039-91e0-0e9c733117f2 4a54209ef1c8f72377582193d788af53 { 'aliquot_tag': 'ALQ_ecc50d86', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02003.RNA-Seq.R2_L003.A C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATTCCT_S12_L003_R2_001.fastq.gz 4216757340 FASTQ R2_L003 unaligned CPTAC3 c99083e8-6f5e-4516-999b-0236384c53e9 4024ab0d77240f0d8f8fe491dcbf5a03 { 'aliquot_tag': 'ALQ_e1026e70', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02003.RNA-Seq.R2_L007.T C3N-02003 LUAD RNA-Seq tumor CPT0109740007 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L007_R2_001.fastq.gz 3493250359 FASTQ R2_L007 unaligned CPTAC3 9c13c469-3b06-4c2e-af20-2cbdcab055ed c2249ab3dff77fcc1019eb21f6b11b51 { 'aliquot_tag': 'ALQ_ecc50d86', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02003.RNA-Seq.transcriptome.A.hg38 C3N-02003 LUAD RNA-Seq tissue_normal CPT0109760006 dd7aaa53-5a9b-4b91-9efd-7250b9d316cf.rna_seq.transcriptome.gdc_realn.bam 9845994301 BAM transcriptome harmonized CPTAC3 21f168eb-8c41-430f-9e9f-64f9b10ef5db 5d72b483da9d05b0c89741f16e951af0 { 'aliquot_tag': 'ALQ_e1026e70', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02003.RNA-Seq.transcriptome.T.hg38 C3N-02003 LUAD RNA-Seq tumor CPT0109740007 69fc1ee8-9ba6-4ef8-a5f2-cbe5853bb5e7.rna_seq.transcriptome.gdc_realn.bam 10084602570 BAM transcriptome harmonized CPTAC3 7b575fac-5940-4c41-b259-8f99a05267ae 09db01c829cb812d92b37d2808102963 { 'aliquot_tag': 'ALQ_ecc50d86', 'gdc_sample_type': 'Primary Tumor' } C3N-02003.WGS.A C3N-02003 LUAD WGS tissue_normal CPT0109760009 CPT0109760009.WholeGenome.RP-1303.bam 61776001726 BAM aligned CPTAC3 92bbd25f-8487-4c91-8e7c-38d0614fbbcc 1cf99139a950e3233a7ba6c2884c0412 { 'aliquot_tag': 'ALQ_71bd73e1', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -28670,11 +30735,11 @@ C3N-02005.MethArray.Green.T C3N-02005 CCRCC Methylation Array tumor CPT010977000 C3N-02005.MethArray.Red.T C3N-02005 CCRCC Methylation Array tumor CPT0109770007 203219720176_R02C01_Red.idat 13676246 IDAT Red NA CPTAC3 2b31939a-afd6-49ad-a34a-5a79aafbd14f 0f04192addd8fbd0554fef0f81cb4eb0 { 'aliquot_tag': 'ALQ_ab657756', 'gdc_sample_type': 'Primary Tumor' } C3N-02005.miRNA-Seq.T C3N-02005 CCRCC miRNA-Seq tumor CPT0109770010 190108_UNC31-K00269_0176_AHYGLVBBXX_GCCAAT_S6_L004_R1_001.unaln.bam 225738162 BAM unaligned CPTAC3 c75bfd81-bcf7-40cb-9f1a-cbc38b9db2b0 7dccd6266ac20698df7df2bc68daa874 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor' } C3N-02005.miRNA-Seq.T.hg38 C3N-02005 CCRCC miRNA-Seq tumor CPT0109770010 858a87b4-ff68-449f-8096-608adf3643ce_mirnaseq_gdc_realn.bam 247935341 BAM harmonized CPTAC3 5b881acc-072a-49c6-8979-0cb30a818be1 f59e977903d18d50e4c1865f104dde22 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02005.RNA-Seq.chimeric.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 092cb8a1-8814-4997-9f85-752dd1a094ad.rna_seq.chimeric.gdc_realn.bam 59505737 BAM chimeric harmonized CPTAC3 3ad8a54f-f5d0-42ba-9524-004f8cb8f08d 43b0762404490551f1ce7915798bf148 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02005.RNA-Seq.genomic.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 092cb8a1-8814-4997-9f85-752dd1a094ad.rna_seq.genomic.gdc_realn.bam 8985129772 BAM genomic harmonized CPTAC3 f828d275-399c-4657-8ee3-0b42978d8547 ffe8f54cc5a06852ff03b95a058ceb72 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02005.RNA-Seq.R1_L002.T C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4033270746 FASTQ R1_L002 unaligned CPTAC3 afde1752-f476-45e9-bcac-c37bf88cc5b5 908a8cd88f321b816dfab5406dadee27 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02005.RNA-Seq.R2_L002.T C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4465342500 FASTQ R2_L002 unaligned CPTAC3 eab3506f-acc0-4135-9683-7d8d8e9a3e14 71ae0683c286c3c7ad0f4a6fa6769ab2 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02005.RNA-Seq.transcriptome.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 092cb8a1-8814-4997-9f85-752dd1a094ad.rna_seq.transcriptome.gdc_realn.bam 10096984011 BAM transcriptome harmonized CPTAC3 f2de84d8-2ec3-4fd0-a349-2b464ba1a1b1 4e053e7fbae3f5ed687ac7ca6894601e { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02005.RNA-Seq.chimeric.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 0530519e-69be-4eb0-b1eb-c1d3924e4d63.rna_seq.chimeric.gdc_realn.bam 59473518 BAM chimeric harmonized CPTAC3 d1061fd6-ad73-42c4-ace0-47ba4b79339c 2a4d4140c6ddd0b3a6da758e9f38bfc4 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02005.RNA-Seq.genomic.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 0530519e-69be-4eb0-b1eb-c1d3924e4d63.rna_seq.genomic.gdc_realn.bam 8986205506 BAM genomic harmonized CPTAC3 9a312a75-897b-4b35-88fb-1133d1e518b4 0d4b88855b008f59ed7ec5ccf78e1d49 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02005.RNA-Seq.R1_L002.T C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L002_R1_001.fastq.gz 4033270746 FASTQ R1_L002 unaligned CPTAC3 afde1752-f476-45e9-bcac-c37bf88cc5b5 908a8cd88f321b816dfab5406dadee27 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02005.RNA-Seq.R2_L002.T C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 190117_UNC31-K00269_0180_AH35VKBBXY_GCCAAT_S6_L002_R2_001.fastq.gz 4465342500 FASTQ R2_L002 unaligned CPTAC3 eab3506f-acc0-4135-9683-7d8d8e9a3e14 71ae0683c286c3c7ad0f4a6fa6769ab2 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02005.RNA-Seq.transcriptome.T.hg38 C3N-02005 CCRCC RNA-Seq tumor CPT0109770010 0530519e-69be-4eb0-b1eb-c1d3924e4d63.rna_seq.transcriptome.gdc_realn.bam 11478074710 BAM transcriptome harmonized CPTAC3 3084aa58-1891-483b-b0a9-395ad347e12b c125a7b83d8584190b3e961777f65063 { 'aliquot_tag': 'ALQ_2c1ad3b4', 'gdc_sample_type': 'Primary Tumor' } C3N-02005.WGS.N C3N-02005 CCRCC WGS blood_normal CPT0139310002 CPT0139310002.WholeGenome.RP-1303.bam 62515735075 BAM aligned CPTAC3 446e9795-a22a-45f6-acc8-21e79a2a534c 21bf8ce5ba38e313a8e4a179d0aaaae5 { 'aliquot_tag': 'ALQ_4151338c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02005.WGS.N.hg38 C3N-02005 CCRCC WGS blood_normal CPT0139310002 92eb0a8b-05b8-4e77-8c2f-3b3e09c26f8b_wgs_gdc_realn.bam 92542452110 BAM harmonized CPTAC3 9094a340-71d1-4c3d-b13f-ae706fa92ee9 ba9d8bfe12564402048b831f3ff51cf1 { 'aliquot_tag': 'ALQ_4151338c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02005.WGS.T C3N-02005 CCRCC WGS tumor CPT0109770007 CPT0109770007.WholeGenome.RP-1303.bam 64836795238 BAM aligned CPTAC3 83ec74e1-c75f-4f1f-b9fb-c871dc5eb269 b4eaa624d8248c5d60366fee8a94d541 { 'aliquot_tag': 'ALQ_ab657756', 'gdc_sample_type': 'Primary Tumor' } @@ -28691,12 +30756,12 @@ C3N-02010.miRNA-Seq.T C3N-02010 PDA miRNA-Seq tumor CPT0241500010 190712_UNC32-K C3N-02010.miRNA-Seq.T.hg38 C3N-02010 PDA miRNA-Seq tumor CPT0241500010 08b29754-5e87-4a1d-845c-cb3c0d823cea_mirnaseq_gdc_realn.bam 229188098 BAM harmonized CPTAC3 b0905aa8-e3b2-4b26-be4a-b79cc66c7143 ea123fa6dc89c3491f655ed43c876d2a { 'aliquot_tag': 'ALQ_5ddad2f7', 'gdc_sample_type': 'Primary Tumor' } C3N-02010.RNA-Seq.chimeric.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 344f1e89-25fb-4f99-b158-b37ce10f7aa0.rna_seq.chimeric.gdc_realn.bam 33483472 BAM chimeric harmonized CPTAC3 54031f54-53a8-400e-8ba4-ac593ea4195d d60c139b9f7da1495535abda2bab72da { 'aliquot_tag': 'ALQ_e7c55fa5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02010.RNA-Seq.chimeric.T.hg38 C3N-02010 PDA RNA-Seq tumor CPT0241500010 219d1438-0079-4e64-bb1e-5b1743720002.rna_seq.chimeric.gdc_realn.bam 39480639 BAM chimeric harmonized CPTAC3 2b7c2d09-4215-4f89-a639-806e21898037 89416f33d300e6a4429a722a51e35d4c { 'aliquot_tag': 'ALQ_5ddad2f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02010.RNA-Seq.genomic.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 344f1e89-25fb-4f99-b158-b37ce10f7aa0.rna_seq.genomic.gdc_realn.bam 7410446604 BAM genomic harmonized CPTAC3 76fc9888-5885-42a0-90db-75ecbfb5adf0 d6254c766440516459948c0a48cf199f { 'aliquot_tag': 'ALQ_e7c55fa5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02010.RNA-Seq.genomic.T.hg38 C3N-02010 PDA RNA-Seq tumor CPT0241500010 219d1438-0079-4e64-bb1e-5b1743720002.rna_seq.genomic.gdc_realn.bam 8946340637 BAM genomic harmonized CPTAC3 0797eb3a-2c4a-49f2-ade7-15f80bcf8157 ebd28451da9667578b68f2f2db68add5 { 'aliquot_tag': 'ALQ_5ddad2f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02010.RNA-Seq.R1_L003.A C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 190715_UNC31-K00269_0232_BH7H7CBBXY_CTACGACA-GAGTCCAA_S12_L003_R1_001.fastq.gz 3427102841 FASTQ R1_L003 unaligned CPTAC3 eeff2902-60e5-404d-9ea1-9d0d23ba346d 72a800ac3ea1efe38c778f1bc65102f7 { 'aliquot_tag': 'ALQ_e7c55fa5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02010.RNA-Seq.R1_L008.T C3N-02010 PDA RNA-Seq tumor CPT0241500010 190702_UNC32-K00270_0188_BH7CLJBBXY_TGCGGCGT-CCTCGGTA_S30_L008_R1_001.fastq.gz 4103338946 FASTQ R1_L008 unaligned CPTAC3 23ac9bde-8bfe-45e1-998f-eb3aa64bf690 fbd62b600eb3a04c89ad42342d7b92b7 { 'aliquot_tag': 'ALQ_5ddad2f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02010.RNA-Seq.R2_L003.A C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 190715_UNC31-K00269_0232_BH7H7CBBXY_CTACGACA-GAGTCCAA_S12_L003_R2_001.fastq.gz 3732783418 FASTQ R2_L003 unaligned CPTAC3 f6b5287d-66f9-4a72-a5d0-130ade6a0a0a 2ffdcf56badc8d39008d437227541317 { 'aliquot_tag': 'ALQ_e7c55fa5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02010.RNA-Seq.R2_L008.T C3N-02010 PDA RNA-Seq tumor CPT0241500010 190702_UNC32-K00270_0188_BH7CLJBBXY_TGCGGCGT-CCTCGGTA_S30_L008_R2_001.fastq.gz 4891018155 FASTQ R2_L008 unaligned CPTAC3 1de6db7e-1fa5-4209-bdf7-3579657ad57f cbca8eb1985217a49e89ca587e14780a { 'aliquot_tag': 'ALQ_5ddad2f7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02010.RNA-Seq.genomic.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 344f1e89-25fb-4f99-b158-b37ce10f7aa0.rna_seq.genomic.gdc_realn.bam 7410446604 BAM genomic harmonized CPTAC3 a2c17e0a-a517-47e3-980a-d0775aca0217 d6254c766440516459948c0a48cf199f { 'aliquot_tag': 'ALQ_e7c55fa5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02010.RNA-Seq.genomic.T.hg38 C3N-02010 PDA RNA-Seq tumor CPT0241500010 219d1438-0079-4e64-bb1e-5b1743720002.rna_seq.genomic.gdc_realn.bam 8946340637 BAM genomic harmonized CPTAC3 74e09891-1587-4641-8d5d-6f465d88ed6d ebd28451da9667578b68f2f2db68add5 { 'aliquot_tag': 'ALQ_5ddad2f7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02010.RNA-Seq.R1_L003.A C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 190715_UNC31-K00269_0232_BH7H7CBBXY_CTACGACA-GAGTCCAA_S12_L003_R1_001.fastq.gz 3427102841 FASTQ R1_L003 unaligned CPTAC3 eeff2902-60e5-404d-9ea1-9d0d23ba346d 72a800ac3ea1efe38c778f1bc65102f7 { 'aliquot_tag': 'ALQ_e7c55fa5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02010.RNA-Seq.R1_L008.T C3N-02010 PDA RNA-Seq tumor CPT0241500010 190702_UNC32-K00270_0188_BH7CLJBBXY_TGCGGCGT-CCTCGGTA_S30_L008_R1_001.fastq.gz 4103338946 FASTQ R1_L008 unaligned CPTAC3 23ac9bde-8bfe-45e1-998f-eb3aa64bf690 fbd62b600eb3a04c89ad42342d7b92b7 { 'aliquot_tag': 'ALQ_5ddad2f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02010.RNA-Seq.R2_L003.A C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 190715_UNC31-K00269_0232_BH7H7CBBXY_CTACGACA-GAGTCCAA_S12_L003_R2_001.fastq.gz 3732783418 FASTQ R2_L003 unaligned CPTAC3 f6b5287d-66f9-4a72-a5d0-130ade6a0a0a 2ffdcf56badc8d39008d437227541317 { 'aliquot_tag': 'ALQ_e7c55fa5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02010.RNA-Seq.R2_L008.T C3N-02010 PDA RNA-Seq tumor CPT0241500010 190702_UNC32-K00270_0188_BH7CLJBBXY_TGCGGCGT-CCTCGGTA_S30_L008_R2_001.fastq.gz 4891018155 FASTQ R2_L008 unaligned CPTAC3 1de6db7e-1fa5-4209-bdf7-3579657ad57f cbca8eb1985217a49e89ca587e14780a { 'aliquot_tag': 'ALQ_5ddad2f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02010.RNA-Seq.transcriptome.A.hg38 C3N-02010 PDA RNA-Seq tissue_normal CPT0241510007 344f1e89-25fb-4f99-b158-b37ce10f7aa0.rna_seq.transcriptome.gdc_realn.bam 8979305967 BAM transcriptome harmonized CPTAC3 0108b760-962f-4c8e-b09b-993fbfd21389 22b336a3bfe4008486c988a640eaae0d { 'aliquot_tag': 'ALQ_e7c55fa5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02010.RNA-Seq.transcriptome.T.hg38 C3N-02010 PDA RNA-Seq tumor CPT0241500010 219d1438-0079-4e64-bb1e-5b1743720002.rna_seq.transcriptome.gdc_realn.bam 11967319195 BAM transcriptome harmonized CPTAC3 afac27e7-7f52-4a1e-9f35-7cc4acceb554 a2e014d58376c07407b78bf44d0e7ed4 { 'aliquot_tag': 'ALQ_5ddad2f7', 'gdc_sample_type': 'Primary Tumor' } C3N-02010.WGS.N C3N-02010 PDA WGS blood_normal CPT0241760002 CPT0241760002.WholeGenome.RP-1303.bam 91505987615 BAM aligned CPTAC3 27fd40ab-e229-42df-8562-4274b676cda5 d283cef550e3f38326453079f8a1d950 { 'aliquot_tag': 'ALQ_6847d631', 'gdc_sample_type': 'Blood Derived Normal' } @@ -28711,13 +30776,16 @@ C3N-02012.MethArray.Green.T C3N-02012 UCEC Methylation Array tumor CPT0115470009 C3N-02012.MethArray.Red.T C3N-02012 UCEC Methylation Array tumor CPT0115470009 203219650042_R03C01_Red.idat 13676226 IDAT Red NA CPTAC3 53e3174b-3223-4c54-a602-69e393b80e3f 249a821053c01d4a42ee6f58fbdffba9 { 'aliquot_tag': 'ALQ_c1434215', 'gdc_sample_type': 'Primary Tumor' } C3N-02012.miRNA-Seq.T C3N-02012 UCEC miRNA-Seq tumor CPT0115470006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTCCGC_S18_L002_R1_001.unaln.bam 280980785 BAM unaligned CPTAC3 f5dc29dc-7ef5-424b-873c-79488c443f3f b787d70c7cad8dd0b48e5ae30c9e5bd5 { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor' } C3N-02012.miRNA-Seq.T.hg38 C3N-02012 UCEC miRNA-Seq tumor CPT0115470006 e5da0962-5a06-4e41-b177-8b5a431ce494_mirnaseq_gdc_realn.bam 329544177 BAM harmonized CPTAC3 8a11e0a6-c508-40b7-b59a-ddb85021083a 96fc7d3eadf7025a40bbae069d67e967 { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor' } -C3N-02012.RNA-Seq.chimeric.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 1e9b3ace-4768-4475-8309-7f9672d36a79.rna_seq.chimeric.gdc_realn.bam 32012554 BAM chimeric harmonized CPTAC3 c8f21aae-df23-4131-9a2a-7a3cea1ef2d4 d88d0777d8a2c4983efdcbc1c0ac80f3 { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor' } -C3N-02012.RNA-Seq.genomic.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 1e9b3ace-4768-4475-8309-7f9672d36a79.rna_seq.genomic.gdc_realn.bam 10043620602 BAM genomic harmonized CPTAC3 38bd6d5f-6445-4b22-a964-350624b5e58e 1f28ecf31ffa0466647654835981d817 { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor' } -C3N-02012.RNA-Seq.R1_L006.T C3N-02012 UCEC RNA-Seq tumor CPT0115470006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGAAA_S22_L006_R1_001.fastq.gz 4383429182 FASTQ R1_L006 unaligned CPTAC3 bdb5f05c-3ae8-4f7c-a9aa-47a0e9778ff8 52ebbde5ab88fc2f511dd75ddd7febad { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor' } -C3N-02012.RNA-Seq.R1_.T C3N-02012 UCEC RNA-Seq tumor CPT0115490001 20210729_P3_F1_WB7988-Plate3_S61_R1_001.fastq.gz 2747299807 FASTQ R1_ unaligned CPTAC3 4362daff-a91a-4d2e-8bf7-ab8018d604e7 eb43bc5e1664d1da05092d0c73d71644 { 'aliquot_tag': 'ALQ_70a87446', 'gdc_sample_type': 'Primary Tumor' } -C3N-02012.RNA-Seq.R2_L006.T C3N-02012 UCEC RNA-Seq tumor CPT0115470006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGAAA_S22_L006_R2_001.fastq.gz 4413847269 FASTQ R2_L006 unaligned CPTAC3 dfc66d0d-d425-4524-9a3a-4a3c55fd76d4 c86a7b9aad9bbcf15d3529566fce5cb8 { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor' } -C3N-02012.RNA-Seq.R2_.T C3N-02012 UCEC RNA-Seq tumor CPT0115490001 20210729_P3_F1_WB7988-Plate3_S61_R2_001.fastq.gz 2868381966 FASTQ R2_ unaligned CPTAC3 2c6f575e-9e22-4359-81e6-7cb669a4a4ce 2492454093708fa77ceb252d2344f946 { 'aliquot_tag': 'ALQ_70a87446', 'gdc_sample_type': 'Primary Tumor' } -C3N-02012.RNA-Seq.transcriptome.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 1e9b3ace-4768-4475-8309-7f9672d36a79.rna_seq.transcriptome.gdc_realn.bam 9866325439 BAM transcriptome harmonized CPTAC3 0cb3cfc4-9adb-4fe1-9e94-eeb42d918345 82472515652386d7f9853bc31ee694fd { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor' } +C3N-02012.RNA-Seq.chimeric.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 e2774ebb-32f1-413f-8bcf-b3c60f1940ee.rna_seq.chimeric.gdc_realn.bam 32006029 BAM chimeric harmonized CPTAC3 93df1f7a-5622-483f-8f1c-8adf95960b85 2342ae1a07c77acc3a4d23d719d8b213 { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor' } +C3N-02012.RNA-Seq.chimeric.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115490001 b3e07e15-0377-461e-b0b2-37ce129cf025.rna_seq.chimeric.gdc_realn.bam 50539801 BAM chimeric harmonized CPTAC3 20eb08b7-bc6c-49d0-ad26-de66f3467c90 a7104f698181a3e37bd93cc2d8a2e964 { 'aliquot_tag': 'ALQ_70a87446', 'gdc_sample_type': 'Primary Tumor' } +C3N-02012.RNA-Seq.genomic.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 e2774ebb-32f1-413f-8bcf-b3c60f1940ee.rna_seq.genomic.gdc_realn.bam 10045757270 BAM genomic harmonized CPTAC3 795c12ec-2e76-47dd-a0f5-561b844ef6fb e0bd808e16a5bea4ebf707c1d009cc89 { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor' } +C3N-02012.RNA-Seq.genomic.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115490001 b3e07e15-0377-461e-b0b2-37ce129cf025.rna_seq.genomic.gdc_realn.bam 4904050631 BAM genomic harmonized CPTAC3 93119456-c31b-4bd3-8220-9c7ae4e5ea72 51af8b575cdd9c1c7376c3b714a1cd2a { 'aliquot_tag': 'ALQ_70a87446', 'gdc_sample_type': 'Primary Tumor' } +C3N-02012.RNA-Seq.R1_L006.T C3N-02012 UCEC RNA-Seq tumor CPT0115470006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGAAA_S22_L006_R1_001.fastq.gz 4383429182 FASTQ R1_L006 unaligned CPTAC3 bdb5f05c-3ae8-4f7c-a9aa-47a0e9778ff8 52ebbde5ab88fc2f511dd75ddd7febad { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02012.RNA-Seq.R2_L006.T C3N-02012 UCEC RNA-Seq tumor CPT0115470006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGAAA_S22_L006_R2_001.fastq.gz 4413847269 FASTQ R2_L006 unaligned CPTAC3 dfc66d0d-d425-4524-9a3a-4a3c55fd76d4 c86a7b9aad9bbcf15d3529566fce5cb8 { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02012.RNA-Seq.T C3N-02012 UCEC RNA-Seq tumor CPT0115490001 20210729_P3_F1_WB7988-Plate3_S61_R1_001.fastq.gz 2747299807 FASTQ unaligned CPTAC3 4362daff-a91a-4d2e-8bf7-ab8018d604e7 eb43bc5e1664d1da05092d0c73d71644 +C3N-02012.RNA-Seq.T C3N-02012 UCEC RNA-Seq tumor CPT0115490001 20210729_P3_F1_WB7988-Plate3_S61_R2_001.fastq.gz 2868381966 FASTQ unaligned CPTAC3 2c6f575e-9e22-4359-81e6-7cb669a4a4ce 2492454093708fa77ceb252d2344f946 +C3N-02012.RNA-Seq.transcriptome.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115470006 e2774ebb-32f1-413f-8bcf-b3c60f1940ee.rna_seq.transcriptome.gdc_realn.bam 11199069793 BAM transcriptome harmonized CPTAC3 bf347293-d55b-4d13-bdfb-2d1d6a50ab27 31a55f102b6ea55f0abbbc8643fda973 { 'aliquot_tag': 'ALQ_51fc5f84', 'gdc_sample_type': 'Primary Tumor' } +C3N-02012.RNA-Seq.transcriptome.T.hg38 C3N-02012 UCEC RNA-Seq tumor CPT0115490001 b3e07e15-0377-461e-b0b2-37ce129cf025.rna_seq.transcriptome.gdc_realn.bam 2692361570 BAM transcriptome harmonized CPTAC3 267aa85b-6f83-44ac-9d5d-779cbfa01607 3855bcbeeb2e45f7f4609eea73f3aec4 { 'aliquot_tag': 'ALQ_70a87446', 'gdc_sample_type': 'Primary Tumor' } C3N-02012.WGS.N C3N-02012 UCEC WGS blood_normal CPT0116390002 CPT0116390002.WholeGenome.RP-1303.bam 62607107661 BAM aligned CPTAC3 b8b93532-1066-4785-bd91-560355666abd 3561fc00f96ed8c9c78070f8cdeae58d { 'aliquot_tag': 'ALQ_c54c0fd9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02012.WGS.N.hg38 C3N-02012 UCEC WGS blood_normal CPT0116390002 a87b0618-96ab-4bff-a90e-bed94464d309_wgs_gdc_realn.bam 91406397337 BAM harmonized CPTAC3 6d80ef08-c423-4405-8d7f-342c0f77b1d2 dc9dc52630f92b6f17409e28c0af2f72 { 'aliquot_tag': 'ALQ_c54c0fd9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02012.WGS.T C3N-02012 UCEC WGS tumor CPT0115470009 CPT0115470009.WholeGenome.RP-1303.bam 55042758115 BAM aligned CPTAC3 2857d8ec-ec5b-42de-8138-3a041ee745d3 14d898fb53b32c3af0d986021e65ef0d { 'aliquot_tag': 'ALQ_c1434215', 'gdc_sample_type': 'Primary Tumor' } @@ -28730,11 +30798,11 @@ C3N-02015.MethArray.Green.T C3N-02015 CCRCC Methylation Array tumor CPT011535000 C3N-02015.MethArray.Red.T C3N-02015 CCRCC Methylation Array tumor CPT0115350009 203219670147_R02C01_Red.idat 13676235 IDAT Red NA CPTAC3 4ee446fc-15f5-4db6-8ed0-f1cdd78d3cbe 5535851f5a3a9294440db91ef568010a { 'aliquot_tag': 'ALQ_a68621cd', 'gdc_sample_type': 'Primary Tumor' } C3N-02015.miRNA-Seq.T C3N-02015 CCRCC miRNA-Seq tumor CPT0115350006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTAGAG_S17_L002_R1_001.unaln.bam 229028120 BAM unaligned CPTAC3 e66145cb-0b23-4dba-97a2-b3c57d8cdbdd 778821a739722935d61c26e0a97b9310 { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor' } C3N-02015.miRNA-Seq.T.hg38 C3N-02015 CCRCC miRNA-Seq tumor CPT0115350006 4f873559-5e37-451d-8b35-a2f53758f34a_mirnaseq_gdc_realn.bam 246072936 BAM harmonized CPTAC3 758dc808-ce43-4829-a7a7-499d1adc5f04 f790abeaed9d1d34183de0750ea1974b { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02015.RNA-Seq.chimeric.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 2fcdd346-2dfd-4215-a042-d87a6d47eb2a.rna_seq.chimeric.gdc_realn.bam 37340589 BAM chimeric harmonized CPTAC3 0e228054-96a9-4d0f-a468-5d80532cb557 ed54519f09e742113ab7ecdefed629bf { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02015.RNA-Seq.genomic.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 2fcdd346-2dfd-4215-a042-d87a6d47eb2a.rna_seq.genomic.gdc_realn.bam 9783544322 BAM genomic harmonized CPTAC3 d94b2835-fd87-4008-9812-5f3899fd1a83 be77073962d0a4eb0a982cacf04c689e { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02015.RNA-Seq.R1_L006.T C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTCCGC_S23_L006_R1_001.fastq.gz 4434486962 FASTQ R1_L006 unaligned CPTAC3 ab5b95fe-7549-4a39-ba52-98d1fdd97c6f c2bf33b5b68984a3cfdd5210a1e76a7e { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02015.RNA-Seq.R2_L006.T C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTCCGC_S23_L006_R2_001.fastq.gz 4922661565 FASTQ R2_L006 unaligned CPTAC3 41a48780-0805-4c99-83d5-4b0edf135893 54f11ebc6c92916f20a66472cabb507f { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02015.RNA-Seq.transcriptome.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 2fcdd346-2dfd-4215-a042-d87a6d47eb2a.rna_seq.transcriptome.gdc_realn.bam 11240502343 BAM transcriptome harmonized CPTAC3 236d35e5-9a79-4182-adb9-dadad1b4fc43 1b750f19b9a45ecdfad5077786bf668f { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02015.RNA-Seq.chimeric.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 934eeac4-16fd-470e-bb69-d6e88c4cc07e.rna_seq.chimeric.gdc_realn.bam 37313205 BAM chimeric harmonized CPTAC3 9875229c-c4ab-4e86-ae87-7d600c29606f f984bc9d836d16be14e66f9e614df56a { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02015.RNA-Seq.genomic.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 934eeac4-16fd-470e-bb69-d6e88c4cc07e.rna_seq.genomic.gdc_realn.bam 9784184583 BAM genomic harmonized CPTAC3 bcf7b49d-d594-42b0-8889-a4dead890403 1524168f4619fd80e9b43dcd4a17defe { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02015.RNA-Seq.R1_L006.T C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTCCGC_S23_L006_R1_001.fastq.gz 4434486962 FASTQ R1_L006 unaligned CPTAC3 ab5b95fe-7549-4a39-ba52-98d1fdd97c6f c2bf33b5b68984a3cfdd5210a1e76a7e { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02015.RNA-Seq.R2_L006.T C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTCCGC_S23_L006_R2_001.fastq.gz 4922661565 FASTQ R2_L006 unaligned CPTAC3 41a48780-0805-4c99-83d5-4b0edf135893 54f11ebc6c92916f20a66472cabb507f { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02015.RNA-Seq.transcriptome.T.hg38 C3N-02015 CCRCC RNA-Seq tumor CPT0115350006 934eeac4-16fd-470e-bb69-d6e88c4cc07e.rna_seq.transcriptome.gdc_realn.bam 12681307061 BAM transcriptome harmonized CPTAC3 7ab1e3bc-8b5a-465f-ba19-088765b09250 77697b9a7cfda9f1843f3a841932a23d { 'aliquot_tag': 'ALQ_36393c5c', 'gdc_sample_type': 'Primary Tumor' } C3N-02015.WGS.N C3N-02015 CCRCC WGS blood_normal CPT0116350002 CPT0116350002.WholeGenome.RP-1303.bam 71914756446 BAM aligned CPTAC3 6dd204de-1555-4cba-8848-6d9372621a05 dad976e98f091db84c3e5d72f2ad1a05 { 'aliquot_tag': 'ALQ_bce2d8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02015.WGS.N.hg38 C3N-02015 CCRCC WGS blood_normal CPT0116350002 b8cb0095-4cbe-4459-a92e-436d4dac96dd_wgs_gdc_realn.bam 106378410715 BAM harmonized CPTAC3 aa254bc8-36f8-4b03-877d-84e51f082537 b97b570ddd7f4c9721b1ec96576441ae { 'aliquot_tag': 'ALQ_bce2d8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02015.WGS.T C3N-02015 CCRCC WGS tumor CPT0115350009 CPT0115350009.WholeGenome.RP-1303.bam 57749479306 BAM aligned CPTAC3 c94cd4f7-607f-473e-ab11-d2371df1983f 7d0be0b54fa95742157c62afec73d21a { 'aliquot_tag': 'ALQ_a68621cd', 'gdc_sample_type': 'Primary Tumor' } @@ -28747,13 +30815,16 @@ C3N-02027.MethArray.Green.T C3N-02027 UCEC Methylation Array tumor CPT0133400011 C3N-02027.MethArray.Red.T C3N-02027 UCEC Methylation Array tumor CPT0133400011 203561450017_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 a448da82-b138-478c-94bf-a5785f24ad76 b9322a2c9ef267921ebcfee171a4ea4b { 'aliquot_tag': 'ALQ_45561531', 'gdc_sample_type': 'Primary Tumor' } C3N-02027.miRNA-Seq.T C3N-02027 UCEC miRNA-Seq tumor CPT0133400014 190508_UNC31-K00269_0215_BH7FYKBBXY_TGACCA_S4_L003_R1_001.unaln.bam 267214195 BAM unaligned CPTAC3 d62d9a02-c8ae-4dcd-a89a-8c1e542611ea 89190d59d0471cebb1e3254d96d80f15 { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor' } C3N-02027.miRNA-Seq.T.hg38 C3N-02027 UCEC miRNA-Seq tumor CPT0133400014 14f86eba-fedf-45e7-b1cc-f2ddefc0b7f9_mirnaseq_gdc_realn.bam 320737998 BAM harmonized CPTAC3 a534a26d-c55c-4c4e-b00f-549ff9a374e3 c54c79762e24827f6f7c144bae7c68b5 { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor' } -C3N-02027.RNA-Seq.chimeric.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 f63385ba-c5bf-4387-b316-a1284ec338ee.rna_seq.chimeric.gdc_realn.bam 38793751 BAM chimeric harmonized CPTAC3 2966aad4-401f-4ed3-9688-9ef0aec5ee35 120825de9c8222048f4f51a23e30607c { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor' } -C3N-02027.RNA-Seq.genomic.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 f63385ba-c5bf-4387-b316-a1284ec338ee.rna_seq.genomic.gdc_realn.bam 8841931169 BAM genomic harmonized CPTAC3 94fa624e-ecd3-46e9-aad2-28281b60e08a 875a3d84f61dd22ab0827644d1cb8215 { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor' } -C3N-02027.RNA-Seq.R1_L002.T C3N-02027 UCEC RNA-Seq tumor CPT0133400014 190604_UNC32-K00270_0177_AH7F5VBBXY_GGTGAACC-GCGTTGGA_S7_L002_R1_001.fastq.gz 4213763179 FASTQ R1_L002 unaligned CPTAC3 c3cc9a23-200c-4a9f-8c0e-3813c6df63fd 6b6d91d1289d749e761a00226b9178c1 { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor' } -C3N-02027.RNA-Seq.R1_.T C3N-02027 UCEC RNA-Seq tumor CPT0133440001 20210714_P1_E12_WB7988_plate1_S60_R1_001.fastq.gz 6362363770 FASTQ R1_ unaligned CPTAC3 218324f9-bf29-41d6-97d5-401ce2f8df81 0a9d6105f54b5d277e936599bff4bda4 { 'aliquot_tag': 'ALQ_a9cd82b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02027.RNA-Seq.R2_L002.T C3N-02027 UCEC RNA-Seq tumor CPT0133400014 190604_UNC32-K00270_0177_AH7F5VBBXY_GGTGAACC-GCGTTGGA_S7_L002_R2_001.fastq.gz 4830339139 FASTQ R2_L002 unaligned CPTAC3 b2b3f26a-8a38-4315-a1a5-ab0c74194a58 8402fb555113b0bc0c74b641941f0caf { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor' } -C3N-02027.RNA-Seq.R2_.T C3N-02027 UCEC RNA-Seq tumor CPT0133440001 20210714_P1_E12_WB7988_plate1_S60_R2_001.fastq.gz 6537001973 FASTQ R2_ unaligned CPTAC3 6e66bc80-8132-4358-bb81-ce52ac94db83 f5b870bf2464d4035cea2762a52da149 { 'aliquot_tag': 'ALQ_a9cd82b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02027.RNA-Seq.transcriptome.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 f63385ba-c5bf-4387-b316-a1284ec338ee.rna_seq.transcriptome.gdc_realn.bam 9208327881 BAM transcriptome harmonized CPTAC3 d029f35e-45a0-4b6e-8467-9c474f09ce97 bc8279a8231acfa75164cef6e4fe3710 { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor' } +C3N-02027.RNA-Seq.chimeric.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 a34fedd6-b7a5-4713-ac4b-2fd9e634912a.rna_seq.chimeric.gdc_realn.bam 38771611 BAM chimeric harmonized CPTAC3 ad11f368-b786-442e-b995-3ddef8976552 253fe326ab4d5a6f3b88738caaebd3a0 { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor' } +C3N-02027.RNA-Seq.chimeric.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133440001 82318817-a80d-4b55-be7c-f909cb3dd607.rna_seq.chimeric.gdc_realn.bam 226156282 BAM chimeric harmonized CPTAC3 15dd3a58-107e-4dc6-951a-606c6f63839d aa6ba0a4a791d61612d50c394d7b5b67 { 'aliquot_tag': 'ALQ_a9cd82b0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02027.RNA-Seq.genomic.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 a34fedd6-b7a5-4713-ac4b-2fd9e634912a.rna_seq.genomic.gdc_realn.bam 8843144736 BAM genomic harmonized CPTAC3 1d579ff0-0be7-4628-89f9-d4b2cb49545c 05d94b3667050498d26c64df06d9e351 { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor' } +C3N-02027.RNA-Seq.genomic.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133440001 82318817-a80d-4b55-be7c-f909cb3dd607.rna_seq.genomic.gdc_realn.bam 10039392240 BAM genomic harmonized CPTAC3 704b7a79-9c93-4777-ab04-6e86db46cc74 c476981e9e7406ada8c3d06414a6f414 { 'aliquot_tag': 'ALQ_a9cd82b0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02027.RNA-Seq.R1_L002.T C3N-02027 UCEC RNA-Seq tumor CPT0133400014 190604_UNC32-K00270_0177_AH7F5VBBXY_GGTGAACC-GCGTTGGA_S7_L002_R1_001.fastq.gz 4213763179 FASTQ R1_L002 unaligned CPTAC3 c3cc9a23-200c-4a9f-8c0e-3813c6df63fd 6b6d91d1289d749e761a00226b9178c1 { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02027.RNA-Seq.R2_L002.T C3N-02027 UCEC RNA-Seq tumor CPT0133400014 190604_UNC32-K00270_0177_AH7F5VBBXY_GGTGAACC-GCGTTGGA_S7_L002_R2_001.fastq.gz 4830339139 FASTQ R2_L002 unaligned CPTAC3 b2b3f26a-8a38-4315-a1a5-ab0c74194a58 8402fb555113b0bc0c74b641941f0caf { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02027.RNA-Seq.T C3N-02027 UCEC RNA-Seq tumor CPT0133440001 20210714_P1_E12_WB7988_plate1_S60_R1_001.fastq.gz 6362363770 FASTQ unaligned CPTAC3 218324f9-bf29-41d6-97d5-401ce2f8df81 0a9d6105f54b5d277e936599bff4bda4 +C3N-02027.RNA-Seq.T C3N-02027 UCEC RNA-Seq tumor CPT0133440001 20210714_P1_E12_WB7988_plate1_S60_R2_001.fastq.gz 6537001973 FASTQ unaligned CPTAC3 6e66bc80-8132-4358-bb81-ce52ac94db83 f5b870bf2464d4035cea2762a52da149 +C3N-02027.RNA-Seq.transcriptome.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133400014 a34fedd6-b7a5-4713-ac4b-2fd9e634912a.rna_seq.transcriptome.gdc_realn.bam 10567540668 BAM transcriptome harmonized CPTAC3 6dd75490-b972-4d54-a8ff-94158e4682d7 f0b758fbf6f72055a383c72016455dde { 'aliquot_tag': 'ALQ_353ce1be', 'gdc_sample_type': 'Primary Tumor' } +C3N-02027.RNA-Seq.transcriptome.T.hg38 C3N-02027 UCEC RNA-Seq tumor CPT0133440001 82318817-a80d-4b55-be7c-f909cb3dd607.rna_seq.transcriptome.gdc_realn.bam 8209264200 BAM transcriptome harmonized CPTAC3 403f0924-1c3d-4d68-b8f4-23e846e87f4b 703b95afb54df135562322e48b031ecd { 'aliquot_tag': 'ALQ_a9cd82b0', 'gdc_sample_type': 'Primary Tumor' } C3N-02027.WGS.N C3N-02027 UCEC WGS blood_normal CPT0133520002 CPT0133520002.WholeGenome.RP-1303.bam 56441091181 BAM aligned CPTAC3 51e78953-143d-49ae-9d5f-edacdcfd8f8b 4fac949711890ab4f577dd6499f29031 { 'aliquot_tag': 'ALQ_74d8f50f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02027.WGS.N.hg38 C3N-02027 UCEC WGS blood_normal CPT0133520002 e17ffaae-a211-4d56-8412-dc0563c72044_wgs_gdc_realn.bam 82064450975 BAM harmonized CPTAC3 d3258f4e-315e-4987-877d-9f6e62bc6e39 1514b6841d86692cbce4eb357d1e91cc { 'aliquot_tag': 'ALQ_74d8f50f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02027.WGS.T C3N-02027 UCEC WGS tumor CPT0133400011 CPT0133400011.WholeGenome.RP-1303.bam 68361661481 BAM aligned CPTAC3 315a4c3c-f57e-4430-9122-4c83673c465a 9440ec3823b8d2b129af8bf30b5b535f { 'aliquot_tag': 'ALQ_45561531', 'gdc_sample_type': 'Primary Tumor' } @@ -28766,13 +30837,16 @@ C3N-02028.MethArray.Green.T C3N-02028 UCEC Methylation Array tumor CPT0133600006 C3N-02028.MethArray.Red.T C3N-02028 UCEC Methylation Array tumor CPT0133600006 203561450084_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 90202837-7ff2-4fd5-9f16-01fc95f0afb7 8a45afa9084adcd1cc07568951443344 { 'aliquot_tag': 'ALQ_8fe110d8', 'gdc_sample_type': 'Primary Tumor' } C3N-02028.miRNA-Seq.T C3N-02028 UCEC miRNA-Seq tumor CPT0133600009 190828_UNC32-K00270_0200_BH7GVJBBXY_GATCAG_S158_L008_R1_001.unaln.bam 245615074 BAM unaligned CPTAC3 a1cb3f88-5e06-4ee2-a84c-3873e92e8ff1 21e5924005e3e1dda3eb2df26ebf5de6 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor' } C3N-02028.miRNA-Seq.T.hg38 C3N-02028 UCEC miRNA-Seq tumor CPT0133600009 8b5611b3-8514-45a2-9da9-1b8e12950072_mirnaseq_gdc_realn.bam 284865569 BAM harmonized CPTAC3 29ce5fca-55fe-40ee-ab45-a3e9e066c51a be27a7f8f13817f981a41317378c9443 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor' } -C3N-02028.RNA-Seq.chimeric.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 db162ae3-5a72-4a03-b646-bfbc9fd3a65c.rna_seq.chimeric.gdc_realn.bam 30968465 BAM chimeric harmonized CPTAC3 9bd526dc-40d0-4816-803c-99035b05a263 c91b2713cfc53a0ee94cb332811456f1 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor' } -C3N-02028.RNA-Seq.genomic.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 db162ae3-5a72-4a03-b646-bfbc9fd3a65c.rna_seq.genomic.gdc_realn.bam 7180029268 BAM genomic harmonized CPTAC3 69fe47c2-788d-4cb7-8234-f31b4571dcae 10f487f69578ab22d0279d1e19006145 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor' } -C3N-02028.RNA-Seq.R1_L001.T C3N-02028 UCEC RNA-Seq tumor CPT0133600009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCAATGCA-GGAACGTT_S3_L001_R1_001.fastq.gz 3512432283 FASTQ R1_L001 unaligned CPTAC3 650a35d7-7d5f-47ae-a9fd-2261d3728c3d b1d93aa30f971e02a3dddfebfc8e45a9 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor' } -C3N-02028.RNA-Seq.R1_.T C3N-02028 UCEC RNA-Seq tumor CPT0133640001 20210723_P2_C5_WB7988-plate2_S29_R1_001.fastq.gz 4540371632 FASTQ R1_ unaligned CPTAC3 57c9d0ae-35a1-486a-91f2-3808b604d575 b67311db308c308b5745d572a4cf99a7 { 'aliquot_tag': 'ALQ_e40523bb', 'gdc_sample_type': 'Primary Tumor' } -C3N-02028.RNA-Seq.R2_L001.T C3N-02028 UCEC RNA-Seq tumor CPT0133600009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCAATGCA-GGAACGTT_S3_L001_R2_001.fastq.gz 3591655345 FASTQ R2_L001 unaligned CPTAC3 db4c185c-4d8b-4d80-9eea-8098e257a7f8 f919f02b0f86819648884a480ffb3bc9 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor' } -C3N-02028.RNA-Seq.R2_.T C3N-02028 UCEC RNA-Seq tumor CPT0133640001 20210723_P2_C5_WB7988-plate2_S29_R2_001.fastq.gz 4614180178 FASTQ R2_ unaligned CPTAC3 ffcce01f-72a5-469e-a539-632cf9d07034 60900b86c40a609e99a11414106476da { 'aliquot_tag': 'ALQ_e40523bb', 'gdc_sample_type': 'Primary Tumor' } -C3N-02028.RNA-Seq.transcriptome.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 db162ae3-5a72-4a03-b646-bfbc9fd3a65c.rna_seq.transcriptome.gdc_realn.bam 7771016122 BAM transcriptome harmonized CPTAC3 e5a9f0fe-7a5d-4da3-ad24-c8a7519a4e75 6dbc09d10ef23b22cfeefbc25bdc880e { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor' } +C3N-02028.RNA-Seq.chimeric.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 f8d561ed-99cf-44a0-b6ee-8e5d87bb54aa.rna_seq.chimeric.gdc_realn.bam 30956405 BAM chimeric harmonized CPTAC3 197ccea0-b15c-448f-900c-424bc3a83d7c 141cc620ed6e1eda266c529f25dc1dc6 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor' } +C3N-02028.RNA-Seq.chimeric.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133640001 297e425e-de6b-4a9f-bc25-d76680906acf.rna_seq.chimeric.gdc_realn.bam 156211335 BAM chimeric harmonized CPTAC3 6c6a235b-dd86-473e-a757-110e35618ead 1b4301708059edee2ea7046aeec366f3 { 'aliquot_tag': 'ALQ_e40523bb', 'gdc_sample_type': 'Primary Tumor' } +C3N-02028.RNA-Seq.genomic.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 f8d561ed-99cf-44a0-b6ee-8e5d87bb54aa.rna_seq.genomic.gdc_realn.bam 7181248789 BAM genomic harmonized CPTAC3 5225222f-9e2d-4e54-a3b8-99258979657b 4bfc3ecf3a505d3b713d09cd68d69bd1 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor' } +C3N-02028.RNA-Seq.genomic.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133640001 297e425e-de6b-4a9f-bc25-d76680906acf.rna_seq.genomic.gdc_realn.bam 9863924962 BAM genomic harmonized CPTAC3 ad6e60dc-0d7d-42c6-a5f0-dfa543cb0069 a175867ec5606b19fbe6e8df130e775e { 'aliquot_tag': 'ALQ_e40523bb', 'gdc_sample_type': 'Primary Tumor' } +C3N-02028.RNA-Seq.R1_L001.T C3N-02028 UCEC RNA-Seq tumor CPT0133600009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCAATGCA-GGAACGTT_S3_L001_R1_001.fastq.gz 3512432283 FASTQ R1_L001 unaligned CPTAC3 650a35d7-7d5f-47ae-a9fd-2261d3728c3d b1d93aa30f971e02a3dddfebfc8e45a9 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02028.RNA-Seq.R2_L001.T C3N-02028 UCEC RNA-Seq tumor CPT0133600009 190715_UNC31-K00269_0232_BH7H7CBBXY_GCAATGCA-GGAACGTT_S3_L001_R2_001.fastq.gz 3591655345 FASTQ R2_L001 unaligned CPTAC3 db4c185c-4d8b-4d80-9eea-8098e257a7f8 f919f02b0f86819648884a480ffb3bc9 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02028.RNA-Seq.T C3N-02028 UCEC RNA-Seq tumor CPT0133640001 20210723_P2_C5_WB7988-plate2_S29_R1_001.fastq.gz 4540371632 FASTQ unaligned CPTAC3 57c9d0ae-35a1-486a-91f2-3808b604d575 b67311db308c308b5745d572a4cf99a7 +C3N-02028.RNA-Seq.T C3N-02028 UCEC RNA-Seq tumor CPT0133640001 20210723_P2_C5_WB7988-plate2_S29_R2_001.fastq.gz 4614180178 FASTQ unaligned CPTAC3 ffcce01f-72a5-469e-a539-632cf9d07034 60900b86c40a609e99a11414106476da +C3N-02028.RNA-Seq.transcriptome.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133600009 f8d561ed-99cf-44a0-b6ee-8e5d87bb54aa.rna_seq.transcriptome.gdc_realn.bam 8956319743 BAM transcriptome harmonized CPTAC3 ff56a1f6-c107-4321-a06d-f5e375a223c5 d343b2bbe8b643a92be56357ae3ebb24 { 'aliquot_tag': 'ALQ_1f5e0d49', 'gdc_sample_type': 'Primary Tumor' } +C3N-02028.RNA-Seq.transcriptome.T.hg38 C3N-02028 UCEC RNA-Seq tumor CPT0133640001 297e425e-de6b-4a9f-bc25-d76680906acf.rna_seq.transcriptome.gdc_realn.bam 3756727545 BAM transcriptome harmonized CPTAC3 7d75bd08-5ca3-487a-9548-cde4c237d366 843fa844aabcf3c83d62f7a280a74462 { 'aliquot_tag': 'ALQ_e40523bb', 'gdc_sample_type': 'Primary Tumor' } C3N-02028.WGS.N C3N-02028 UCEC WGS blood_normal CPT0133700002 CPT0133700002.WholeGenome.RP-1303.bam 89239370891 BAM aligned CPTAC3 7ee706af-a536-4e16-bbf9-27be0b29075b 957a830dc3c16af9e8a0cecb38bba289 { 'aliquot_tag': 'ALQ_43d00764', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02028.WGS.N.hg38 C3N-02028 UCEC WGS blood_normal CPT0133700002 7ca9695f-4331-43c0-af16-09fc88247605_wgs_gdc_realn.bam 129489764987 BAM harmonized CPTAC3 e249d843-17df-4561-9601-9d5fc2c010f9 e5f8375efaa254c3a3ab6d3daa9590ef { 'aliquot_tag': 'ALQ_43d00764', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02028.WGS.T C3N-02028 UCEC WGS tumor CPT0133600006 CPT0133600006.WholeGenome.RP-1303.bam 91559372318 BAM aligned CPTAC3 55f34b5c-1d7c-4ea2-8e91-d7d40a3149f4 2f94fc56659351cb8207d0e7ce3de143 { 'aliquot_tag': 'ALQ_8fe110d8', 'gdc_sample_type': 'Primary Tumor' } @@ -28781,11 +30855,11 @@ C3N-02028.WXS.N C3N-02028 UCEC WXS blood_normal CPT0133700002 CPT0133700002.Whol C3N-02028.WXS.N.hg38 C3N-02028 UCEC WXS blood_normal CPT0133700002 7ca9695f-4331-43c0-af16-09fc88247605_wxs_gdc_realn.bam 46322276387 BAM harmonized CPTAC3 7dba5f79-10d3-40bf-bf2e-313e75648a56 24ff6b265761cfed2c2d8154f1d6982f { 'aliquot_tag': 'ALQ_43d00764', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02028.WXS.T C3N-02028 UCEC WXS tumor CPT0133600006 CPT0133600006.WholeExome.RP-1303.bam 20299901395 BAM aligned CPTAC3 502127ce-e17b-4392-8c4e-8ae350a52ff7 e2bb652827f57ece8371d4c2e328c15b { 'aliquot_tag': 'ALQ_8fe110d8', 'gdc_sample_type': 'Primary Tumor' } C3N-02028.WXS.T.hg38 C3N-02028 UCEC WXS tumor CPT0133600006 8e786c46-68d2-4c88-80ce-479ff84b737a_wxs_gdc_realn.bam 28292657787 BAM harmonized CPTAC3 14be1940-8f7a-4a7f-ae13-df21f70ae11a 4150446b035d98312ed60c4ab7b3e332 { 'aliquot_tag': 'ALQ_8fe110d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02030.DUP_1ad835b9.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 37e56339-3a43-482e-a669-50202032c3c1.rna_seq.chimeric.gdc_realn.bam 154086933 BAM chimeric harmonized CPTAC3 8830baab-5791-4a7c-b344-3259edf81b38 35cfe4abc24c5ad325b3e0cff96d9fd7 { 'aliquot_tag': 'DUP_1ad835b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_1ad835b9.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 37e56339-3a43-482e-a669-50202032c3c1.rna_seq.genomic.gdc_realn.bam 9223803685 BAM genomic harmonized CPTAC3 54b3330e-3529-4d2e-9f81-921404b41375 0a5c135b9b6eb2950c84cb5b9486be31 { 'aliquot_tag': 'DUP_1ad835b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_1ad835b9.RNA-Seq.R1_L002.T C3N-02030 UCEC RNA-Seq tumor CPT0133760071 200212_UNC31-K00269_0265_BHGCWGBBXY_GAACCGCG-TGACCTTA_S5_L002_R1_001.fastq.gz 3961602699 FASTQ R1_L002 unaligned CPTAC3 5ad5897e-92b3-47e6-8312-699a61fc5136 2e1fb3e955b95ba27f59a8fbaf7a9d18 { 'aliquot_tag': 'DUP_1ad835b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_1ad835b9.RNA-Seq.R2_L002.T C3N-02030 UCEC RNA-Seq tumor CPT0133760071 200212_UNC31-K00269_0265_BHGCWGBBXY_GAACCGCG-TGACCTTA_S5_L002_R2_001.fastq.gz 4349735026 FASTQ R2_L002 unaligned CPTAC3 a8d02375-61bb-4f66-b57e-b81abb4e38d4 89bea8da76d485adf118d330bca74fbb { 'aliquot_tag': 'DUP_1ad835b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_1ad835b9.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 37e56339-3a43-482e-a669-50202032c3c1.rna_seq.transcriptome.gdc_realn.bam 4953855532 BAM transcriptome harmonized CPTAC3 5e0526de-96c9-4632-ad57-7e9d1b8589e6 61fb152d01931b8b2258cef4cf04da90 { 'aliquot_tag': 'DUP_1ad835b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_1ad835b9.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 34e63f6d-2cb5-46a7-8348-4852a0750ee8.rna_seq.chimeric.gdc_realn.bam 154075949 BAM chimeric harmonized CPTAC3 2ab0bceb-e5c1-4a92-9f8f-b24441fd6acd eaaa52ec1e895bba626dc59b1cccbe97 { 'aliquot_tag': 'DUP_1ad835b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_1ad835b9.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 34e63f6d-2cb5-46a7-8348-4852a0750ee8.rna_seq.genomic.gdc_realn.bam 9224759649 BAM genomic harmonized CPTAC3 2726b697-bb96-4e45-88af-8df8dc4d93a1 c1687b97c4e6728a985ef1c48bb7a44b { 'aliquot_tag': 'DUP_1ad835b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_1ad835b9.RNA-Seq.R1_L002.T C3N-02030 UCEC RNA-Seq tumor CPT0133760071 200212_UNC31-K00269_0265_BHGCWGBBXY_GAACCGCG-TGACCTTA_S5_L002_R1_001.fastq.gz 3961602699 FASTQ R1_L002 unaligned CPTAC3 5ad5897e-92b3-47e6-8312-699a61fc5136 2e1fb3e955b95ba27f59a8fbaf7a9d18 { 'aliquot_tag': 'DUP_1ad835b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L002' } +C3N-02030.DUP_1ad835b9.RNA-Seq.R2_L002.T C3N-02030 UCEC RNA-Seq tumor CPT0133760071 200212_UNC31-K00269_0265_BHGCWGBBXY_GAACCGCG-TGACCTTA_S5_L002_R2_001.fastq.gz 4349735026 FASTQ R2_L002 unaligned CPTAC3 a8d02375-61bb-4f66-b57e-b81abb4e38d4 89bea8da76d485adf118d330bca74fbb { 'aliquot_tag': 'DUP_1ad835b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L002' } +C3N-02030.DUP_1ad835b9.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760071 34e63f6d-2cb5-46a7-8348-4852a0750ee8.rna_seq.transcriptome.gdc_realn.bam 5564656279 BAM transcriptome harmonized CPTAC3 265609a2-44fb-4fb0-958f-940b5771e099 e7f080d76dfae198416e145993247b35 { 'aliquot_tag': 'DUP_1ad835b9', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_251d530e.WXS.T C3N-02030 UCEC WXS tumor CPT0133780085 CPT0133780085.WholeExome.RP-1303.bam 21577329994 BAM aligned CPTAC3 dca9eda1-806d-4914-80df-806beca61919 f59507d0fad331a7800f51f02163463a { 'aliquot_tag': 'DUP_251d530e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_251d530e.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780085 d8179cc9-97e8-42a6-8839-778705458d3e_wxs_gdc_realn.bam 29605838581 BAM harmonized CPTAC3 dff2a285-3794-4f83-95b1-22d38ec2a3e4 ae538a59cc87271f3b3e8b4e4047eca2 { 'aliquot_tag': 'DUP_251d530e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_2cab1f25.WXS.T C3N-02030 UCEC WXS tumor CPT0133780089 CPT0133780089.WholeExome.RP-1303.bam 25266670340 BAM aligned CPTAC3 83932d96-4b3d-4005-a5e5-c01745ca1d73 333483b5d6760d2b138233657fde8e52 { 'aliquot_tag': 'DUP_2cab1f25', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } @@ -28794,25 +30868,25 @@ C3N-02030.DUP_3b6ba656.WGS.T C3N-02030 UCEC WGS tumor CPT0133780091 CPT013378009 C3N-02030.DUP_3b6ba656.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133780091 dbd52ff5-66e8-40d5-a19b-6cdfb27721e4_wgs_gdc_realn.bam 86147208736 BAM harmonized CPTAC3 9c2855bb-1dc7-4f7d-9718-fe4353cd1759 d8b8f8f99495b263bc7ca44e9c0a4f83 { 'aliquot_tag': 'DUP_3b6ba656', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_3b6ba656.WXS.T C3N-02030 UCEC WXS tumor CPT0133780091 CPT0133780091.WholeExome.RP-1303.bam 20663772908 BAM aligned CPTAC3 7ed3de68-efac-4557-a0df-9e47e12dbeae 8bcda8434ac6a139f2c8a3d6e2e0f71c { 'aliquot_tag': 'DUP_3b6ba656', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_3b6ba656.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780091 dbd52ff5-66e8-40d5-a19b-6cdfb27721e4_wxs_gdc_realn.bam 28486630304 BAM harmonized CPTAC3 25b66613-911b-4521-902d-66015177acb7 b14dd8d92a5ab70e4bfd158bdaca6ec2 { 'aliquot_tag': 'DUP_3b6ba656', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_3b8c1e7b.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 1bbd699a-febe-43d6-80c0-99af68a4e600.rna_seq.chimeric.gdc_realn.bam 286668591 BAM chimeric harmonized CPTAC3 7d873eba-322d-4586-bb01-2980670fe747 826547fb06e2b35cb98581cccba565cb { 'aliquot_tag': 'DUP_3b8c1e7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_3b8c1e7b.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 1bbd699a-febe-43d6-80c0-99af68a4e600.rna_seq.genomic.gdc_realn.bam 11507995942 BAM genomic harmonized CPTAC3 522d5864-e687-4cc6-a26f-de8076c11c6a 33d60db35aa3365fe752fa680da14046 { 'aliquot_tag': 'DUP_3b8c1e7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_3b8c1e7b.RNA-Seq.R1_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780076 200212_UNC31-K00269_0265_BHGCWGBBXY_CGCTATGT-TCCGACAC_S2_L001_R1_001.fastq.gz 4709238926 FASTQ R1_L001 unaligned CPTAC3 d2e5a5ef-168b-4eee-80a3-2d7910c501b5 fa77d5dd36a6977ed864d09816d221ce { 'aliquot_tag': 'DUP_3b8c1e7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_3b8c1e7b.RNA-Seq.R2_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780076 200212_UNC31-K00269_0265_BHGCWGBBXY_CGCTATGT-TCCGACAC_S2_L001_R2_001.fastq.gz 5336664080 FASTQ R2_L001 unaligned CPTAC3 2cd879a9-b2a5-4bdd-9dcb-77e006ecaff8 ff82d64811164b98b54bc2eb04db7df4 { 'aliquot_tag': 'DUP_3b8c1e7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_3b8c1e7b.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 1bbd699a-febe-43d6-80c0-99af68a4e600.rna_seq.transcriptome.gdc_realn.bam 4227679995 BAM transcriptome harmonized CPTAC3 3f61c509-fd8d-49ae-b14e-a5fa81d728d9 cd51a9605296800c601e14b38ff1896e { 'aliquot_tag': 'DUP_3b8c1e7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_3b8c1e7b.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 9b88bb6e-4c4f-4c41-a397-6a4934f8743c.rna_seq.chimeric.gdc_realn.bam 286645236 BAM chimeric harmonized CPTAC3 d262c419-7255-445f-a933-d869a891a174 cf58b164ac15bfa61b5e38b3f7c65cbf { 'aliquot_tag': 'DUP_3b8c1e7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_3b8c1e7b.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 9b88bb6e-4c4f-4c41-a397-6a4934f8743c.rna_seq.genomic.gdc_realn.bam 11508641502 BAM genomic harmonized CPTAC3 cc71456f-b4dc-4094-afc5-e847d8843898 b1a3d8c883824841ed213513a60c927e { 'aliquot_tag': 'DUP_3b8c1e7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_3b8c1e7b.RNA-Seq.R1_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780076 200212_UNC31-K00269_0265_BHGCWGBBXY_CGCTATGT-TCCGACAC_S2_L001_R1_001.fastq.gz 4709238926 FASTQ R1_L001 unaligned CPTAC3 d2e5a5ef-168b-4eee-80a3-2d7910c501b5 fa77d5dd36a6977ed864d09816d221ce { 'aliquot_tag': 'DUP_3b8c1e7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L001' } +C3N-02030.DUP_3b8c1e7b.RNA-Seq.R2_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780076 200212_UNC31-K00269_0265_BHGCWGBBXY_CGCTATGT-TCCGACAC_S2_L001_R2_001.fastq.gz 5336664080 FASTQ R2_L001 unaligned CPTAC3 2cd879a9-b2a5-4bdd-9dcb-77e006ecaff8 ff82d64811164b98b54bc2eb04db7df4 { 'aliquot_tag': 'DUP_3b8c1e7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L001' } +C3N-02030.DUP_3b8c1e7b.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780076 9b88bb6e-4c4f-4c41-a397-6a4934f8743c.rna_seq.transcriptome.gdc_realn.bam 4769238916 BAM transcriptome harmonized CPTAC3 87dbca4c-b385-49a3-8b71-caf026ed20bf 3a253a7f9fafd7acb9b1c071475666f8 { 'aliquot_tag': 'DUP_3b8c1e7b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_44978cc.WGS.T C3N-02030 UCEC WGS tumor CPT0133760082 CPT0133760082.WholeGenome.RP-2158.bam 30949053164 BAM aligned CPTAC3 c77518b5-e0c8-406e-9329-07c68c7d61ca 0e1ef9b9b1fc8d9b088bc5a8aa5546fb { 'aliquot_tag': 'DUP_44978cc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_44978cc.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760082 e64aabb6-f30a-4466-958c-14a07d5d7e3f_wgs_gdc_realn.bam 91538682587 BAM harmonized CPTAC3 0d155398-634d-4993-a4ed-cdae99518bae f2c84c4619cdaef053b265054aca8b0b { 'aliquot_tag': 'DUP_44978cc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_44978cc.WXS.T C3N-02030 UCEC WXS tumor CPT0133760082 CPT0133760082.WholeExome.RP-1303.bam 25220285181 BAM aligned CPTAC3 ac1f0679-c216-42e3-b30d-94708066bdd6 76c4a7268eed2916e9e6b6ff48ae997e { 'aliquot_tag': 'DUP_44978cc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_44978cc.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760082 e64aabb6-f30a-4466-958c-14a07d5d7e3f_wxs_gdc_realn.bam 34352310115 BAM harmonized CPTAC3 7321f870-b841-475d-902c-f7e3f6fcd697 d114cb61e31f6753f3554f6a588e3ce3 { 'aliquot_tag': 'DUP_44978cc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_4aec0e1.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 b7c299cf-b8e1-45b7-aa63-9a6ee1a5e28d.rna_seq.chimeric.gdc_realn.bam 214613511 BAM chimeric harmonized CPTAC3 af087d22-02bf-4eca-98f3-a329aefe3042 51af91bc0be8430084ebe1fb2bf00755 { 'aliquot_tag': 'DUP_4aec0e1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_4aec0e1.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 b7c299cf-b8e1-45b7-aa63-9a6ee1a5e28d.rna_seq.genomic.gdc_realn.bam 8836025348 BAM genomic harmonized CPTAC3 d8c15a94-8136-4a2e-bfab-11f4de178d21 cadb4a3c33c4fd947298087295b6e58e { 'aliquot_tag': 'DUP_4aec0e1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_4aec0e1.RNA-Seq.R1_L003.T C3N-02030 UCEC RNA-Seq tumor CPT0133760065 200212_UNC31-K00269_0265_BHGCWGBBXY_TCATCCTT-AGCGAGCT_S11_L003_R1_001.fastq.gz 3891952742 FASTQ R1_L003 unaligned CPTAC3 bac36753-12a5-4b17-a95b-628317566e97 121ffaaf4a940f2e4f8c6cf071556cde { 'aliquot_tag': 'DUP_4aec0e1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_4aec0e1.RNA-Seq.R2_L003.T C3N-02030 UCEC RNA-Seq tumor CPT0133760065 200212_UNC31-K00269_0265_BHGCWGBBXY_TCATCCTT-AGCGAGCT_S11_L003_R2_001.fastq.gz 4293519061 FASTQ R2_L003 unaligned CPTAC3 80bb4040-ac35-42eb-afb0-a961027bc4de 29194e4acb96fe14894f620c9afec4ac { 'aliquot_tag': 'DUP_4aec0e1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_4aec0e1.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 b7c299cf-b8e1-45b7-aa63-9a6ee1a5e28d.rna_seq.transcriptome.gdc_realn.bam 5221565020 BAM transcriptome harmonized CPTAC3 62bfbf10-593a-41e7-a1e8-cbb8e4b102ea 2c157b08099d4e19677c8f148b4bc701 { 'aliquot_tag': 'DUP_4aec0e1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_4be6eaf4.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 4daf9855-3647-4e22-a5d8-7f66a7c0f2bc.rna_seq.chimeric.gdc_realn.bam 455043734 BAM chimeric harmonized CPTAC3 c509d079-6f18-458b-b691-c78fc38d97c9 d228250e29fc450bd0771e64ad2be295 { 'aliquot_tag': 'DUP_4be6eaf4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_4be6eaf4.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 4daf9855-3647-4e22-a5d8-7f66a7c0f2bc.rna_seq.genomic.gdc_realn.bam 13118776536 BAM genomic harmonized CPTAC3 310e6355-e43e-4978-99d4-2e72bef96bf0 c24d951367075ee9ac937de112b3131d { 'aliquot_tag': 'DUP_4be6eaf4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_4be6eaf4.RNA-Seq.R1_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780073 200212_UNC31-K00269_0265_BHGCWGBBXY_TATCGCAC-CTTAGTGT_S1_L001_R1_001.fastq.gz 5251570745 FASTQ R1_L001 unaligned CPTAC3 07069cd0-9954-4076-b91e-619b40f4433e 6217af3aeafb6445a8d79e8fd604ceb5 { 'aliquot_tag': 'DUP_4be6eaf4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_4be6eaf4.RNA-Seq.R2_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780073 200212_UNC31-K00269_0265_BHGCWGBBXY_TATCGCAC-CTTAGTGT_S1_L001_R2_001.fastq.gz 5905196935 FASTQ R2_L001 unaligned CPTAC3 0f2b5b23-32e9-4675-84ab-85fe96dd5c94 71be54125451f4e81aab938fff150ce7 { 'aliquot_tag': 'DUP_4be6eaf4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_4be6eaf4.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 4daf9855-3647-4e22-a5d8-7f66a7c0f2bc.rna_seq.transcriptome.gdc_realn.bam 5371743066 BAM transcriptome harmonized CPTAC3 5cdfc85d-bddd-4d5e-bd71-1742e1d67d87 fed52b5f685b3662b6be8cd121d4f179 { 'aliquot_tag': 'DUP_4be6eaf4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_4aec0e1.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 212cec19-4db6-4260-80b3-47866f9d9217.rna_seq.chimeric.gdc_realn.bam 214596980 BAM chimeric harmonized CPTAC3 c436052a-bcdc-4912-ab85-23c5d83fbab5 366c62378b359f7ebe7e25462a5b358a { 'aliquot_tag': 'DUP_4aec0e1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_4aec0e1.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 212cec19-4db6-4260-80b3-47866f9d9217.rna_seq.genomic.gdc_realn.bam 8836919717 BAM genomic harmonized CPTAC3 6c71d1b8-5128-43c2-a2c3-771d7d85f39d 7f833f2312339ebd5b6b5eb0089bd561 { 'aliquot_tag': 'DUP_4aec0e1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_4aec0e1.RNA-Seq.R1_L003.T C3N-02030 UCEC RNA-Seq tumor CPT0133760065 200212_UNC31-K00269_0265_BHGCWGBBXY_TCATCCTT-AGCGAGCT_S11_L003_R1_001.fastq.gz 3891952742 FASTQ R1_L003 unaligned CPTAC3 bac36753-12a5-4b17-a95b-628317566e97 121ffaaf4a940f2e4f8c6cf071556cde { 'aliquot_tag': 'DUP_4aec0e1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L003' } +C3N-02030.DUP_4aec0e1.RNA-Seq.R2_L003.T C3N-02030 UCEC RNA-Seq tumor CPT0133760065 200212_UNC31-K00269_0265_BHGCWGBBXY_TCATCCTT-AGCGAGCT_S11_L003_R2_001.fastq.gz 4293519061 FASTQ R2_L003 unaligned CPTAC3 80bb4040-ac35-42eb-afb0-a961027bc4de 29194e4acb96fe14894f620c9afec4ac { 'aliquot_tag': 'DUP_4aec0e1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L003' } +C3N-02030.DUP_4aec0e1.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760065 212cec19-4db6-4260-80b3-47866f9d9217.rna_seq.transcriptome.gdc_realn.bam 5927790434 BAM transcriptome harmonized CPTAC3 67281b68-72d0-493d-a614-16d5345fe604 8bc8cad8ea1ad1e7d4af1cb652f082ad { 'aliquot_tag': 'DUP_4aec0e1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_4be6eaf4.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 43eda799-8cdc-4e62-8616-7bbcc80e109a.rna_seq.chimeric.gdc_realn.bam 455028579 BAM chimeric harmonized CPTAC3 a773fc0b-afa1-40a9-a890-94b8cb1bf085 b43b3e314c84b9959922e6de8ca9b36a { 'aliquot_tag': 'DUP_4be6eaf4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_4be6eaf4.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 43eda799-8cdc-4e62-8616-7bbcc80e109a.rna_seq.genomic.gdc_realn.bam 13119649724 BAM genomic harmonized CPTAC3 720c0dc1-51c8-4e38-b460-99e18a583082 8bf9c44c49069fcd813b43d2defcb9f1 { 'aliquot_tag': 'DUP_4be6eaf4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_4be6eaf4.RNA-Seq.R1_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780073 200212_UNC31-K00269_0265_BHGCWGBBXY_TATCGCAC-CTTAGTGT_S1_L001_R1_001.fastq.gz 5251570745 FASTQ R1_L001 unaligned CPTAC3 07069cd0-9954-4076-b91e-619b40f4433e 6217af3aeafb6445a8d79e8fd604ceb5 { 'aliquot_tag': 'DUP_4be6eaf4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L001' } +C3N-02030.DUP_4be6eaf4.RNA-Seq.R2_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780073 200212_UNC31-K00269_0265_BHGCWGBBXY_TATCGCAC-CTTAGTGT_S1_L001_R2_001.fastq.gz 5905196935 FASTQ R2_L001 unaligned CPTAC3 0f2b5b23-32e9-4675-84ab-85fe96dd5c94 71be54125451f4e81aab938fff150ce7 { 'aliquot_tag': 'DUP_4be6eaf4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L001' } +C3N-02030.DUP_4be6eaf4.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780073 43eda799-8cdc-4e62-8616-7bbcc80e109a.rna_seq.transcriptome.gdc_realn.bam 6077931898 BAM transcriptome harmonized CPTAC3 33e7f4e0-1de3-472b-b36a-3e51f29c89a5 ae340cbe750bcd27235a0d2d911391d9 { 'aliquot_tag': 'DUP_4be6eaf4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_4c6c96c0.WXS.T C3N-02030 UCEC WXS tumor CPT0133780090 CPT0133780090.WholeExome.RP-1303.bam 30268747107 BAM aligned CPTAC3 3480f6d3-ab17-4ee8-891f-f19e29693499 26c51e36419e541adb2e5b506fe22498 { 'aliquot_tag': 'DUP_4c6c96c0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_4c6c96c0.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780090 b441401d-5964-4d23-b1f8-304a677e5d14_wxs_gdc_realn.bam 41853619347 BAM harmonized CPTAC3 51af4f26-9a93-4779-b2a9-89237d338f7f e1d2f0ee7f692c439c8fc3d3ac04ac5e { 'aliquot_tag': 'DUP_4c6c96c0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_63048d1d.WGS.T C3N-02030 UCEC WGS tumor CPT0133760078 CPT0133760078.WholeGenome.RP-2158.bam 17147710287 BAM aligned CPTAC3 eeab7ce9-56b8-499a-a396-0f605d09735c ba21b9972631b4ba1190190784b0d7ab { 'aliquot_tag': 'DUP_63048d1d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } @@ -28823,11 +30897,11 @@ C3N-02030.DUP_734e485a.WGS.T C3N-02030 UCEC WGS tumor CPT0133760083 CPT013376008 C3N-02030.DUP_734e485a.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760083 7913b077-d539-41c8-8060-1ef6258df54c_wgs_gdc_realn.bam 46070776825 BAM harmonized CPTAC3 5a9899f1-8a2a-4cc8-8d6e-e0c832b52b5a eb2596384d886f06a0474ad4be8a821a { 'aliquot_tag': 'DUP_734e485a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_734e485a.WXS.T C3N-02030 UCEC WXS tumor CPT0133760083 CPT0133760083.WholeExome.RP-1303.bam 21284909798 BAM aligned CPTAC3 4b4e95a9-140a-44b3-aade-d1b94252bba5 787b468e1163db4a2db86f6a5bfa6cbb { 'aliquot_tag': 'DUP_734e485a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_734e485a.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760083 7913b077-d539-41c8-8060-1ef6258df54c_wxs_gdc_realn.bam 29071173979 BAM harmonized CPTAC3 5f5ba4a2-1f4f-4e72-bd65-d8bb36eeb059 a8f8ef573b4b5ca56e786275303d128e { 'aliquot_tag': 'DUP_734e485a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_7a1fbc5c.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 24bf27fc-29ff-45cf-a6ac-a3a909c85d1f.rna_seq.chimeric.gdc_realn.bam 164421741 BAM chimeric harmonized CPTAC3 ce1090ca-3503-428d-8c7e-7ca1de429449 9fe93917779042d8f9c63356d8de415f { 'aliquot_tag': 'DUP_7a1fbc5c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_7a1fbc5c.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 24bf27fc-29ff-45cf-a6ac-a3a909c85d1f.rna_seq.genomic.gdc_realn.bam 8894460374 BAM genomic harmonized CPTAC3 2cfd5bda-bfbc-42de-a9bf-ce46e35aa2ad 95bb6b7c6c473f1ea803ad08aa603887 { 'aliquot_tag': 'DUP_7a1fbc5c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_7a1fbc5c.RNA-Seq.R1_L002.T C3N-02030 UCEC RNA-Seq tumor CPT0133760068 200212_UNC31-K00269_0265_BHGCWGBBXY_AGGTTATA-CAGTTCCG_S4_L002_R1_001.fastq.gz 3650759312 FASTQ R1_L002 unaligned CPTAC3 bc77c5b2-bb5b-4b41-ba1e-e7fe70d26030 2719d1cd5f302ea0299ef775023b07a0 { 'aliquot_tag': 'DUP_7a1fbc5c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_7a1fbc5c.RNA-Seq.R2_L002.T C3N-02030 UCEC RNA-Seq tumor CPT0133760068 200212_UNC31-K00269_0265_BHGCWGBBXY_AGGTTATA-CAGTTCCG_S4_L002_R2_001.fastq.gz 3948002383 FASTQ R2_L002 unaligned CPTAC3 ca28739a-4a7e-4bf1-82f8-421b65b9be40 08c8c91c7692c9ae924a5cf646d0b411 { 'aliquot_tag': 'DUP_7a1fbc5c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_7a1fbc5c.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 24bf27fc-29ff-45cf-a6ac-a3a909c85d1f.rna_seq.transcriptome.gdc_realn.bam 3467179683 BAM transcriptome harmonized CPTAC3 99fabc6f-e337-4802-98d0-7989dc05b4da 2bdee0ac413fc0affbc0cabaf9fc9f97 { 'aliquot_tag': 'DUP_7a1fbc5c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_7a1fbc5c.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 7c4a5806-8fc8-488b-858d-693b334a4567.rna_seq.chimeric.gdc_realn.bam 164417489 BAM chimeric harmonized CPTAC3 1c1d948b-7f2f-4850-afde-dd89afda7ccf c14b83e5990cd7593486f453469e7ed7 { 'aliquot_tag': 'DUP_7a1fbc5c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_7a1fbc5c.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 7c4a5806-8fc8-488b-858d-693b334a4567.rna_seq.genomic.gdc_realn.bam 8894981310 BAM genomic harmonized CPTAC3 e13cdcfa-37c0-4a03-9e67-c34b54f2e562 27565909e026fe9c9b7463cfab667003 { 'aliquot_tag': 'DUP_7a1fbc5c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_7a1fbc5c.RNA-Seq.R1_L002.T C3N-02030 UCEC RNA-Seq tumor CPT0133760068 200212_UNC31-K00269_0265_BHGCWGBBXY_AGGTTATA-CAGTTCCG_S4_L002_R1_001.fastq.gz 3650759312 FASTQ R1_L002 unaligned CPTAC3 bc77c5b2-bb5b-4b41-ba1e-e7fe70d26030 2719d1cd5f302ea0299ef775023b07a0 { 'aliquot_tag': 'DUP_7a1fbc5c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L002' } +C3N-02030.DUP_7a1fbc5c.RNA-Seq.R2_L002.T C3N-02030 UCEC RNA-Seq tumor CPT0133760068 200212_UNC31-K00269_0265_BHGCWGBBXY_AGGTTATA-CAGTTCCG_S4_L002_R2_001.fastq.gz 3948002383 FASTQ R2_L002 unaligned CPTAC3 ca28739a-4a7e-4bf1-82f8-421b65b9be40 08c8c91c7692c9ae924a5cf646d0b411 { 'aliquot_tag': 'DUP_7a1fbc5c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L002' } +C3N-02030.DUP_7a1fbc5c.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133760068 7c4a5806-8fc8-488b-858d-693b334a4567.rna_seq.transcriptome.gdc_realn.bam 3889777987 BAM transcriptome harmonized CPTAC3 23fbe2c3-5ae8-4075-bf3c-53a5e9fe1161 781985d8f4e6c53049a89644e772b7d0 { 'aliquot_tag': 'DUP_7a1fbc5c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_84bca01a.WGS.T C3N-02030 UCEC WGS tumor CPT0133760076 CPT0133760076.WholeGenome.RP-2158.bam 25052943166 BAM aligned CPTAC3 1c747cee-a357-4da4-bea9-96454dbfd420 16d8b09b2614d85f816d49047195edb0 { 'aliquot_tag': 'DUP_84bca01a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_84bca01a.WGS.T.hg38 C3N-02030 UCEC WGS tumor CPT0133760076 0adb5230-01ea-46f3-8f0a-ae7d91d4c4e6_wgs_gdc_realn.bam 75297593539 BAM harmonized CPTAC3 199d9247-71a4-4efb-94d1-3ce66012b272 f184f1fb20523886349420c129b0dbd5 { 'aliquot_tag': 'DUP_84bca01a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_84bca01a.WXS.T C3N-02030 UCEC WXS tumor CPT0133760076 CPT0133760076.WholeExome.RP-1303.bam 29426464494 BAM aligned CPTAC3 249d3a65-6ae3-4c88-a18e-574a63822f58 86764c18b30299620b9aefb171dbc1a7 { 'aliquot_tag': 'DUP_84bca01a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } @@ -28836,11 +30910,11 @@ C3N-02030.DUP_9d402976.WXS.T C3N-02030 UCEC WXS tumor CPT0133760081 CPT013376008 C3N-02030.DUP_9d402976.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133760081 f2304480-635b-405f-ae51-e019c472b798_wxs_gdc_realn.bam 26087738138 BAM harmonized CPTAC3 93b62f09-7ced-4013-844f-91e3f7e30e47 358262f4ce641c1c252c966dcec8369b { 'aliquot_tag': 'DUP_9d402976', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_a262f7ec.WXS.T C3N-02030 UCEC WXS tumor CPT0133780092 CPT0133780092.WholeExome.RP-1303.bam 15210456768 BAM aligned CPTAC3 c234274d-e4af-4984-90a2-2e6e94b86c4f 349cd260d0f7511efd2b791bc2c9ebe9 { 'aliquot_tag': 'DUP_a262f7ec', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_a262f7ec.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780092 4811084b-1a9d-46c1-b3c9-702e65cbaf56_wxs_gdc_realn.bam 21424219326 BAM harmonized CPTAC3 61c562aa-afc1-4d23-8a43-1f4a1c236c05 7dbdba91e58f1c7c7bc06ce11c04a0f4 { 'aliquot_tag': 'DUP_a262f7ec', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_ab3303ea.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 648b0243-2c9c-47ce-8888-089a4bee6777.rna_seq.chimeric.gdc_realn.bam 172524977 BAM chimeric harmonized CPTAC3 b63552a1-1070-4b35-95bc-cc6ea94835b2 7ba2499f52f040f74472991145c1ffce { 'aliquot_tag': 'DUP_ab3303ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_ab3303ea.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 648b0243-2c9c-47ce-8888-089a4bee6777.rna_seq.genomic.gdc_realn.bam 10853065284 BAM genomic harmonized CPTAC3 cc3326df-6485-4f69-b4f9-29879f597271 24906ae4c4baaaf1060a614d28d8eed5 { 'aliquot_tag': 'DUP_ab3303ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_ab3303ea.RNA-Seq.R1_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780079 200212_UNC31-K00269_0265_BHGCWGBBXY_GTATGTTC-AACAGGAA_S3_L001_R1_001.fastq.gz 4507887248 FASTQ R1_L001 unaligned CPTAC3 45e801c2-3bc4-4d2c-890c-772839aaf7ef 232796b9f856d0d466cd02066c402e3e { 'aliquot_tag': 'DUP_ab3303ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_ab3303ea.RNA-Seq.R2_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780079 200212_UNC31-K00269_0265_BHGCWGBBXY_GTATGTTC-AACAGGAA_S3_L001_R2_001.fastq.gz 5086401011 FASTQ R2_L001 unaligned CPTAC3 a7184ebc-94ac-457c-9cc9-6287d3732955 41fa1b6c88b4e837b5e35662fcae0829 { 'aliquot_tag': 'DUP_ab3303ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } -C3N-02030.DUP_ab3303ea.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 648b0243-2c9c-47ce-8888-089a4bee6777.rna_seq.transcriptome.gdc_realn.bam 6779665187 BAM transcriptome harmonized CPTAC3 f288b190-b311-4646-aa34-36620b7f67c3 63c6bfd8a3cfe29944487993e8e4c1eb { 'aliquot_tag': 'DUP_ab3303ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_ab3303ea.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 44ede3cd-4306-458e-ae9c-7bdf617213b1.rna_seq.chimeric.gdc_realn.bam 172509214 BAM chimeric harmonized CPTAC3 35dcd42e-dfc3-41d3-bf05-50b9fee9fb1a 876b37294c6573a9e681261e6023ea2d { 'aliquot_tag': 'DUP_ab3303ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_ab3303ea.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 44ede3cd-4306-458e-ae9c-7bdf617213b1.rna_seq.genomic.gdc_realn.bam 10853662920 BAM genomic harmonized CPTAC3 bc39032e-5e9c-4997-9594-721ddca43d69 9f657977209e8dade728faec1de212c3 { 'aliquot_tag': 'DUP_ab3303ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } +C3N-02030.DUP_ab3303ea.RNA-Seq.R1_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780079 200212_UNC31-K00269_0265_BHGCWGBBXY_GTATGTTC-AACAGGAA_S3_L001_R1_001.fastq.gz 4507887248 FASTQ R1_L001 unaligned CPTAC3 45e801c2-3bc4-4d2c-890c-772839aaf7ef 232796b9f856d0d466cd02066c402e3e { 'aliquot_tag': 'DUP_ab3303ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R1', 'lane': 'L001' } +C3N-02030.DUP_ab3303ea.RNA-Seq.R2_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133780079 200212_UNC31-K00269_0265_BHGCWGBBXY_GTATGTTC-AACAGGAA_S3_L001_R2_001.fastq.gz 5086401011 FASTQ R2_L001 unaligned CPTAC3 a7184ebc-94ac-457c-9cc9-6287d3732955 41fa1b6c88b4e837b5e35662fcae0829 { 'aliquot_tag': 'DUP_ab3303ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot', 'read': 'R2', 'lane': 'L001' } +C3N-02030.DUP_ab3303ea.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133780079 44ede3cd-4306-458e-ae9c-7bdf617213b1.rna_seq.transcriptome.gdc_realn.bam 7579814827 BAM transcriptome harmonized CPTAC3 ff69390f-77c7-462f-9e2d-49117c935c50 5a8047e1dd3cae5bfbc1064632f0ed48 { 'aliquot_tag': 'DUP_ab3303ea', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_cb133222.WXS.T C3N-02030 UCEC WXS tumor CPT0133780087 CPT0133780087.WholeExome.RP-1303.bam 24860634954 BAM aligned CPTAC3 080a9922-fb39-4838-ad16-6f68c827f3e6 405ef118010316043ad76ab7630524bd { 'aliquot_tag': 'DUP_cb133222', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_cb133222.WXS.T.hg38 C3N-02030 UCEC WXS tumor CPT0133780087 efc3430c-64c2-419e-874c-27cffb89aba0_wxs_gdc_realn.bam 34308858972 BAM harmonized CPTAC3 7d70a4be-94eb-4d3d-9e77-e71f30ec6ba0 e3da2f573608fbda9b712d817fdb77fe { 'aliquot_tag': 'DUP_cb133222', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } C3N-02030.DUP_ea4719e0.WGS.T C3N-02030 UCEC WGS tumor CPT0133760080 CPT0133760080.WholeGenome.RP-2158.bam 20531550838 BAM aligned CPTAC3 8b5f2a0d-287d-477d-9677-a3b452b10d02 1ac8fa20b65c92e02b4f5a6f1eb46be5 { 'aliquot_tag': 'DUP_ea4719e0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC LMD Heterogeneity Pilot' } @@ -28851,13 +30925,16 @@ C3N-02030.MethArray.Green.T C3N-02030 UCEC Methylation Array tumor CPT0133770011 C3N-02030.MethArray.Red.T C3N-02030 UCEC Methylation Array tumor CPT0133770011 203561620087_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e240a310-6a23-49e1-973c-0960e1c3ec41 b5be762ab131ee13c22fd2ec6702466d { 'aliquot_tag': 'ALQ_71e2bb8f', 'gdc_sample_type': 'Primary Tumor' } C3N-02030.miRNA-Seq.T C3N-02030 UCEC miRNA-Seq tumor CPT0133770014 190508_UNC31-K00269_0215_BH7FYKBBXY_ACAGTG_S5_L003_R1_001.unaln.bam 194461538 BAM unaligned CPTAC3 700fc28c-1180-4305-a5ea-45027a60430b 5242e290b204bb0a72b8149813fb1f18 { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor' } C3N-02030.miRNA-Seq.T.hg38 C3N-02030 UCEC miRNA-Seq tumor CPT0133770014 5b485b03-ddbd-4589-a450-b37b39c2756e_mirnaseq_gdc_realn.bam 220002404 BAM harmonized CPTAC3 53e7124b-718f-4f12-87fa-7883f7283601 7c73d6f0aa352cc3602159dce129825e { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02030.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 9432477a-520f-4ed0-8772-91d5e8b9ae2e.rna_seq.chimeric.gdc_realn.bam 33767136 BAM chimeric harmonized CPTAC3 d74b0533-eb74-47eb-b9cb-c35b0c6d4eef 08699958d7d1d5ce181f19af219336a1 { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02030.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 9432477a-520f-4ed0-8772-91d5e8b9ae2e.rna_seq.genomic.gdc_realn.bam 8145731176 BAM genomic harmonized CPTAC3 76a3306c-645d-4c00-a0b6-17454d8c5c65 4a162b9d2e3a95a7559810cc9b1440f2 { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02030.RNA-Seq.R1_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133770014 190604_UNC32-K00270_0177_AH7F5VBBXY_CAACAATG-CTTCACGG_S3_L001_R1_001.fastq.gz 3797075959 FASTQ R1_L001 unaligned CPTAC3 235c78ef-decc-43e8-9cd2-72dc3eb0cd60 21e2472d155c465796ec6f2bb435241a { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02030.RNA-Seq.R1_.T C3N-02030 UCEC RNA-Seq tumor CPT0133810001 20210714_P1_B12_WB7988_plate1_S24_R1_001.fastq.gz 4925673859 FASTQ R1_ unaligned CPTAC3 b68b4254-4ad5-47c1-a888-7e5bfd9d2230 82c3c34380658bfc5d1f9498a0d5c4f4 { 'aliquot_tag': 'ALQ_16efcdbb', 'gdc_sample_type': 'Primary Tumor' } -C3N-02030.RNA-Seq.R2_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133770014 190604_UNC32-K00270_0177_AH7F5VBBXY_CAACAATG-CTTCACGG_S3_L001_R2_001.fastq.gz 4388626836 FASTQ R2_L001 unaligned CPTAC3 17857e63-90c3-4bc1-ac11-683694a6ec42 4ea6dccc93ab93ce0fa95f98244748e7 { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02030.RNA-Seq.R2_.T C3N-02030 UCEC RNA-Seq tumor CPT0133810001 20210714_P1_B12_WB7988_plate1_S24_R2_001.fastq.gz 5280580142 FASTQ R2_ unaligned CPTAC3 e023cecb-60e1-4393-9159-6dd8d74e7c01 08ecc4ebaadd156efdab9e494311dd25 { 'aliquot_tag': 'ALQ_16efcdbb', 'gdc_sample_type': 'Primary Tumor' } -C3N-02030.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 9432477a-520f-4ed0-8772-91d5e8b9ae2e.rna_seq.transcriptome.gdc_realn.bam 8055982747 BAM transcriptome harmonized CPTAC3 4ca18dfc-1840-424a-80d1-7397d47eb4f4 3f2b5e6ed8cd5f623ea712b83cea7708 { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02030.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 afdce952-c429-4112-a3eb-d5bdf715d5f0.rna_seq.chimeric.gdc_realn.bam 33762710 BAM chimeric harmonized CPTAC3 70da8158-e86d-4dd3-83e5-a830507cd401 b02a7d7cd32830c8a24347f9df4e8de9 { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02030.RNA-Seq.chimeric.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133810001 50b989c3-dbe6-4049-ac62-615a78c2e820.rna_seq.chimeric.gdc_realn.bam 116657227 BAM chimeric harmonized CPTAC3 b583e804-ecf4-4885-b7dd-ec5c4086dbc9 ac55382684590bef543b6e9ec7314d5d { 'aliquot_tag': 'ALQ_16efcdbb', 'gdc_sample_type': 'Primary Tumor' } +C3N-02030.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 afdce952-c429-4112-a3eb-d5bdf715d5f0.rna_seq.genomic.gdc_realn.bam 8146802795 BAM genomic harmonized CPTAC3 28da5b1e-9edc-44f9-8425-024b39b64041 963cce1e1c3f95be793112a99c61f6dd { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02030.RNA-Seq.genomic.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133810001 50b989c3-dbe6-4049-ac62-615a78c2e820.rna_seq.genomic.gdc_realn.bam 9707589677 BAM genomic harmonized CPTAC3 f6befaa4-45b5-478c-8bb0-338fa755bc08 26f0d791cf7445bec12c214e1edc7ada { 'aliquot_tag': 'ALQ_16efcdbb', 'gdc_sample_type': 'Primary Tumor' } +C3N-02030.RNA-Seq.R1_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133770014 190604_UNC32-K00270_0177_AH7F5VBBXY_CAACAATG-CTTCACGG_S3_L001_R1_001.fastq.gz 3797075959 FASTQ R1_L001 unaligned CPTAC3 235c78ef-decc-43e8-9cd2-72dc3eb0cd60 21e2472d155c465796ec6f2bb435241a { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02030.RNA-Seq.R2_L001.T C3N-02030 UCEC RNA-Seq tumor CPT0133770014 190604_UNC32-K00270_0177_AH7F5VBBXY_CAACAATG-CTTCACGG_S3_L001_R2_001.fastq.gz 4388626836 FASTQ R2_L001 unaligned CPTAC3 17857e63-90c3-4bc1-ac11-683694a6ec42 4ea6dccc93ab93ce0fa95f98244748e7 { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02030.RNA-Seq.T C3N-02030 UCEC RNA-Seq tumor CPT0133810001 20210714_P1_B12_WB7988_plate1_S24_R1_001.fastq.gz 4925673859 FASTQ unaligned CPTAC3 b68b4254-4ad5-47c1-a888-7e5bfd9d2230 82c3c34380658bfc5d1f9498a0d5c4f4 +C3N-02030.RNA-Seq.T C3N-02030 UCEC RNA-Seq tumor CPT0133810001 20210714_P1_B12_WB7988_plate1_S24_R2_001.fastq.gz 5280580142 FASTQ unaligned CPTAC3 e023cecb-60e1-4393-9159-6dd8d74e7c01 08ecc4ebaadd156efdab9e494311dd25 +C3N-02030.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133770014 afdce952-c429-4112-a3eb-d5bdf715d5f0.rna_seq.transcriptome.gdc_realn.bam 9262388329 BAM transcriptome harmonized CPTAC3 3f60490b-a11f-45a6-bc6f-b3e1bb657296 9351df9e64ad7a8070ec090669c0fb15 { 'aliquot_tag': 'ALQ_1884f00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02030.RNA-Seq.transcriptome.T.hg38 C3N-02030 UCEC RNA-Seq tumor CPT0133810001 50b989c3-dbe6-4049-ac62-615a78c2e820.rna_seq.transcriptome.gdc_realn.bam 5670720501 BAM transcriptome harmonized CPTAC3 dfea98f4-b8c9-43bb-88e1-97caebc292f6 77837db4683e6c7e603772d14b04a0dd { 'aliquot_tag': 'ALQ_16efcdbb', 'gdc_sample_type': 'Primary Tumor' } C3N-02030.WGS.N C3N-02030 UCEC WGS blood_normal CPT0133880002 CPT0133880002.WholeGenome.RP-1303.bam 56644630837 BAM aligned CPTAC3 215e1766-675e-4186-aef0-49dc4822aec1 00c76a434ceffe6c0dec2e26c0a9b512 { 'aliquot_tag': 'ALQ_82f6fe70', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02030.WGS.N.hg38 C3N-02030 UCEC WGS blood_normal CPT0133880002 138b1cf0-0ac2-46d6-b211-35060de01e80_wgs_gdc_realn.bam 82771416633 BAM harmonized CPTAC3 6bef4527-ba45-445e-a6da-5b29ba4e4476 071626c6d37516519d379a17e2df418d { 'aliquot_tag': 'ALQ_82f6fe70', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02030.WGS.T C3N-02030 UCEC WGS tumor CPT0133770011 CPT0133770011.WholeGenome.RP-1303.bam 59880248248 BAM aligned CPTAC3 7d97bcae-e9c5-47ca-957e-5d5e6a834605 aa437a348c9f8cc1ac913cc556e07503 { 'aliquot_tag': 'ALQ_71e2bb8f', 'gdc_sample_type': 'Primary Tumor' } @@ -28872,16 +30949,16 @@ C3N-02034.miRNA-Seq.A C3N-02034 SAR miRNA-Seq tissue_normal CPT0099360009 181119 C3N-02034.miRNA-Seq.A.hg38 C3N-02034 SAR miRNA-Seq tissue_normal CPT0099360009 519c3e7d-c63d-4475-ad45-b7c72f3682bf_mirnaseq_gdc_realn.bam 222959366 BAM harmonized CPTAC3 c4da88d9-f1da-400d-a220-9fa002316079 3da01bd8b27a23d70c82d6bb2416161b { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02034.miRNA-Seq.T C3N-02034 SAR miRNA-Seq tumor CPT0099340006 181108_UNC31-K00269_0163_BH23TVBBXY_CAGGCG_S33_L007_R1_001.unaln.bam 346809672 BAM unaligned CPTAC3 759f554c-c8a6-4b8b-92a1-cd26fb235737 d6db2154d9a8bcebb73e0c2b514bacb3 { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor' } C3N-02034.miRNA-Seq.T.hg38 C3N-02034 SAR miRNA-Seq tumor CPT0099340006 437b6e53-e5a6-4784-935f-e51462fcfeb2_mirnaseq_gdc_realn.bam 373611203 BAM harmonized CPTAC3 730f8389-8847-4006-8c08-e36e2ba4ed58 ff7a86a76c905d142496de6894c8c3ca { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02034.RNA-Seq.chimeric.A.hg38 C3N-02034 SAR RNA-Seq tissue_normal CPT0099360009 9bff21f2-ad6f-4ccd-85ee-4bf8ad6231dc.rna_seq.chimeric.gdc_realn.bam 24459959 BAM chimeric harmonized CPTAC3 cbbf7ffa-8df3-4802-8d88-19431cb4a13d 4d58cb3415414a6b569988c9a9888e08 { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02034.RNA-Seq.chimeric.T.hg38 C3N-02034 SAR RNA-Seq tumor CPT0099340006 69fbf3be-948e-43cd-bbcd-d3cc9d323eee.rna_seq.chimeric.gdc_realn.bam 67294259 BAM chimeric harmonized CPTAC3 2f48b523-63de-4546-9dbf-60ce64ecfc82 99a686a9f4836d092533301239afd7a4 { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02034.RNA-Seq.genomic.A.hg38 C3N-02034 SAR RNA-Seq tissue_normal CPT0099360009 9bff21f2-ad6f-4ccd-85ee-4bf8ad6231dc.rna_seq.genomic.gdc_realn.bam 8207281243 BAM genomic harmonized CPTAC3 337a77a8-308f-4f65-bef2-f39deffe17a6 d3e487599fb7ef858e4a6f6a4c73bc76 { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02034.RNA-Seq.genomic.T.hg38 C3N-02034 SAR RNA-Seq tumor CPT0099340006 69fbf3be-948e-43cd-bbcd-d3cc9d323eee.rna_seq.genomic.gdc_realn.bam 8510780217 BAM genomic harmonized CPTAC3 f22d5187-d551-4141-b303-9eea55f9ffbc ada3e5c89c7318d519366212356c767d { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02034.RNA-Seq.R1_L005.A C3N-02034 SAR RNA-Seq tissue_normal CPT0099360009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTGAAA_S17_L005_R1_001.fastq.gz 3524946913 FASTQ R1_L005 unaligned CPTAC3 58df41de-ea69-44a2-9d24-28b670ee3e30 2d54a5dc3c93fd51a1a2dd342871fd21 { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02034.RNA-Seq.R1_L005.T C3N-02034 SAR RNA-Seq tumor CPT0099340006 171107_UNC32-K00270_0063_BHLNTCBBXX_CCGTCC_S54_L005_R1_001.fastq.gz 3767460498 FASTQ R1_L005 unaligned CPTAC3 416ef6fe-0dae-4937-9867-23b7e2895363 46a78ef9751ecaf681aca0d113faafc9 { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02034.RNA-Seq.R2_L005.A C3N-02034 SAR RNA-Seq tissue_normal CPT0099360009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 3682534812 FASTQ R2_L005 unaligned CPTAC3 03dd9ef1-8992-4d46-94e4-877ea54cf506 486cf2f6797e28929fe9b0a939075358 { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02034.RNA-Seq.R2_L005.T C3N-02034 SAR RNA-Seq tumor CPT0099340006 171107_UNC32-K00270_0063_BHLNTCBBXX_CCGTCC_S54_L005_R2_001.fastq.gz 4104499083 FASTQ R2_L005 unaligned CPTAC3 4fad0e61-0793-4f82-8dd0-df21ccdd4eab ebd249bf1427b4e2679723a4aaed95c3 { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02034.RNA-Seq.transcriptome.A.hg38 C3N-02034 SAR RNA-Seq tissue_normal CPT0099360009 9bff21f2-ad6f-4ccd-85ee-4bf8ad6231dc.rna_seq.transcriptome.gdc_realn.bam 7845647285 BAM transcriptome harmonized CPTAC3 1d71682d-c325-4ea4-917c-b7ba7c2dce08 1cc7f276fba8e14682465b9776d942c1 { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02034.RNA-Seq.transcriptome.T.hg38 C3N-02034 SAR RNA-Seq tumor CPT0099340006 69fbf3be-948e-43cd-bbcd-d3cc9d323eee.rna_seq.transcriptome.gdc_realn.bam 8492347734 BAM transcriptome harmonized CPTAC3 014ffc66-63e4-47ca-8fc6-4283d4fb08e8 22591027e00662bbd9dd032f15c64b23 { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02034.RNA-Seq.chimeric.A.hg38 C3N-02034 SAR RNA-Seq tissue_normal CPT0099360009 071531fe-d075-4fa1-bd82-9d2bfac112f7.rna_seq.chimeric.gdc_realn.bam 24450519 BAM chimeric harmonized CPTAC3 d29893f7-1c3e-4a38-9421-a81d0d98e44b d39050ed48b371cdcd6fe452857c6e3e { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02034.RNA-Seq.chimeric.T.hg38 C3N-02034 SAR RNA-Seq tumor CPT0099340006 49b0a2fb-80da-4c66-82d7-273bd053d639.rna_seq.chimeric.gdc_realn.bam 67275323 BAM chimeric harmonized CPTAC3 5b158b09-0b6e-4626-adca-b65b7d217c65 d4bfc428d7cf00a00961e8075f738121 { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02034.RNA-Seq.genomic.A.hg38 C3N-02034 SAR RNA-Seq tissue_normal CPT0099360009 071531fe-d075-4fa1-bd82-9d2bfac112f7.rna_seq.genomic.gdc_realn.bam 8208304746 BAM genomic harmonized CPTAC3 d3a505de-ee3d-4538-afa5-b7f1235aca28 fad3733ff7de1f3da20f912de87b8b13 { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02034.RNA-Seq.genomic.T.hg38 C3N-02034 SAR RNA-Seq tumor CPT0099340006 49b0a2fb-80da-4c66-82d7-273bd053d639.rna_seq.genomic.gdc_realn.bam 8511766007 BAM genomic harmonized CPTAC3 22fa21a4-e30a-4757-9c99-af529c193b3f ab4bed5028a43b14f93be12f22ad117b { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02034.RNA-Seq.R1_L005.A C3N-02034 SAR RNA-Seq tissue_normal CPT0099360009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTGAAA_S17_L005_R1_001.fastq.gz 3524946913 FASTQ R1_L005 unaligned CPTAC3 58df41de-ea69-44a2-9d24-28b670ee3e30 2d54a5dc3c93fd51a1a2dd342871fd21 { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02034.RNA-Seq.R1_L005.T C3N-02034 SAR RNA-Seq tumor CPT0099340006 171107_UNC32-K00270_0063_BHLNTCBBXX_CCGTCC_S54_L005_R1_001.fastq.gz 3767460498 FASTQ R1_L005 unaligned CPTAC3 416ef6fe-0dae-4937-9867-23b7e2895363 46a78ef9751ecaf681aca0d113faafc9 { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02034.RNA-Seq.R2_L005.A C3N-02034 SAR RNA-Seq tissue_normal CPT0099360009 180606_UNC32-K00270_0097_AHVCKFBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 3682534812 FASTQ R2_L005 unaligned CPTAC3 03dd9ef1-8992-4d46-94e4-877ea54cf506 486cf2f6797e28929fe9b0a939075358 { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02034.RNA-Seq.R2_L005.T C3N-02034 SAR RNA-Seq tumor CPT0099340006 171107_UNC32-K00270_0063_BHLNTCBBXX_CCGTCC_S54_L005_R2_001.fastq.gz 4104499083 FASTQ R2_L005 unaligned CPTAC3 4fad0e61-0793-4f82-8dd0-df21ccdd4eab ebd249bf1427b4e2679723a4aaed95c3 { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02034.RNA-Seq.transcriptome.A.hg38 C3N-02034 SAR RNA-Seq tissue_normal CPT0099360009 071531fe-d075-4fa1-bd82-9d2bfac112f7.rna_seq.transcriptome.gdc_realn.bam 8803727889 BAM transcriptome harmonized CPTAC3 10cdadf8-f0c1-448e-9657-bf75c2cc98e9 3699b83f3e9b8fe3436d7dcb3328a40d { 'aliquot_tag': 'ALQ_e2183e9f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02034.RNA-Seq.transcriptome.T.hg38 C3N-02034 SAR RNA-Seq tumor CPT0099340006 49b0a2fb-80da-4c66-82d7-273bd053d639.rna_seq.transcriptome.gdc_realn.bam 9550168490 BAM transcriptome harmonized CPTAC3 bae6c7fd-a463-4c6a-bd29-9707db424b2d 86bf47c50592231638a464f9e9ab7757 { 'aliquot_tag': 'ALQ_867706e', 'gdc_sample_type': 'Primary Tumor' } C3N-02034.WGS.N C3N-02034 SAR WGS blood_normal CPT0099370002 CPT0099370002.WholeGenome.RP-1303.bam 57567660368 BAM aligned CPTAC3 ec6c1855-5dee-44d4-9f25-942a70d3c27e 7aef295a3686cdba11fbe44cefd5935a { 'aliquot_tag': 'ALQ_48aacea7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02034.WGS.N.hg38 C3N-02034 SAR WGS blood_normal CPT0099370002 73043cec-99f8-41d3-aa57-dc2ede108d33_wgs_gdc_realn.bam 83455265048 BAM harmonized CPTAC3 d284eb55-8c35-4eed-be5d-6a7f3db49019 efa448d8b1da462401d108ada09071f7 { 'aliquot_tag': 'ALQ_48aacea7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02034.WGS.T C3N-02034 SAR WGS tumor CPT0099340009 CPT0099340009.WholeGenome.RP-1303.bam 61430048689 BAM aligned CPTAC3 792a178f-f21f-4269-bac9-7a3053c03ebf 11710566dd9e4812e230c0d171ca9e70 { 'aliquot_tag': 'ALQ_98d86dff', 'gdc_sample_type': 'Primary Tumor' } @@ -28896,11 +30973,11 @@ C3N-02038.MethArray.Green.T C3N-02038 SAR Methylation Array tumor CPT0099190009 C3N-02038.MethArray.Red.T C3N-02038 SAR Methylation Array tumor CPT0099190009 202234380069_R06C01_Red.idat 13676246 IDAT Red NA CPTAC3 b2a8b28c-d590-4b0f-99aa-7b711c27977a 93a09a992bea5fca93dda9c6f501d573 { 'aliquot_tag': 'ALQ_2d800845', 'gdc_sample_type': 'Primary Tumor' } C3N-02038.miRNA-Seq.T C3N-02038 SAR miRNA-Seq tumor CPT0099190006 181113_UNC31-K00269_0164_AH23NNBBXY_TCATTC_S21_L001_R1_001.unaln.bam 195175651 BAM unaligned CPTAC3 3e3cd272-7274-4920-9d28-34f5ab05a99e b0b94fee2c7f1d1746106d8a0c9b6ec2 { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor' } C3N-02038.miRNA-Seq.T.hg38 C3N-02038 SAR miRNA-Seq tumor CPT0099190006 eb5551df-46b5-46f1-9ec0-f7fc5ddb0392_mirnaseq_gdc_realn.bam 217752555 BAM harmonized CPTAC3 c99c3b86-e7fc-4023-81e3-3220091f101b 6a1c714306c7cccd2787101cc9110310 { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02038.RNA-Seq.chimeric.T.hg38 C3N-02038 SAR RNA-Seq tumor CPT0099190006 ea238493-ecc9-4bbd-bac1-3858d1577646.rna_seq.chimeric.gdc_realn.bam 40936759 BAM chimeric harmonized CPTAC3 ef99261a-270b-49e9-849a-06e590f84c1a 574d48ca50160acb51f84674de9b8405 { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02038.RNA-Seq.genomic.T.hg38 C3N-02038 SAR RNA-Seq tumor CPT0099190006 ea238493-ecc9-4bbd-bac1-3858d1577646.rna_seq.genomic.gdc_realn.bam 8994405670 BAM genomic harmonized CPTAC3 1dc5b22f-b246-441e-ac25-9ae8ef0ce557 9d21293009daf38028ac47ecd6040b62 { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02038.RNA-Seq.R1_L004.T C3N-02038 SAR RNA-Seq tumor CPT0099190006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTCCGC_S47_L004_R1_001.fastq.gz 3930390913 FASTQ R1_L004 unaligned CPTAC3 21cbd533-7f58-4920-80fb-0dc4078fbbd4 c6faac0f0d8ac652f4e61944bfa5ac60 { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02038.RNA-Seq.R2_L004.T C3N-02038 SAR RNA-Seq tumor CPT0099190006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTCCGC_S47_L004_R2_001.fastq.gz 4420417484 FASTQ R2_L004 unaligned CPTAC3 0417f70c-7d40-4655-9a68-295f0d95253d d206af741883760278f04a2bc81f9237 { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02038.RNA-Seq.transcriptome.T.hg38 C3N-02038 SAR RNA-Seq tumor CPT0099190006 ea238493-ecc9-4bbd-bac1-3858d1577646.rna_seq.transcriptome.gdc_realn.bam 9304025073 BAM transcriptome harmonized CPTAC3 be84148c-50b9-470f-a928-8fce2d65e87a eac9886e25c5718ac1c28912277af489 { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02038.RNA-Seq.chimeric.T.hg38 C3N-02038 SAR RNA-Seq tumor CPT0099190006 bdd032a9-1921-49dc-a56e-476128d34d47.rna_seq.chimeric.gdc_realn.bam 40927567 BAM chimeric harmonized CPTAC3 4b0b5d6d-ce7b-4286-ad72-6779883a4353 5d62efb40926b5ab072b4f5ab67f5578 { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02038.RNA-Seq.genomic.T.hg38 C3N-02038 SAR RNA-Seq tumor CPT0099190006 bdd032a9-1921-49dc-a56e-476128d34d47.rna_seq.genomic.gdc_realn.bam 8994791566 BAM genomic harmonized CPTAC3 0e49ce6c-dd09-4ecc-a383-999625ecebcd e5f90d0e4b5729918771783f207b6f7a { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02038.RNA-Seq.R1_L004.T C3N-02038 SAR RNA-Seq tumor CPT0099190006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTCCGC_S47_L004_R1_001.fastq.gz 3930390913 FASTQ R1_L004 unaligned CPTAC3 21cbd533-7f58-4920-80fb-0dc4078fbbd4 c6faac0f0d8ac652f4e61944bfa5ac60 { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02038.RNA-Seq.R2_L004.T C3N-02038 SAR RNA-Seq tumor CPT0099190006 171107_UNC32-K00270_0063_BHLNTCBBXX_GTCCGC_S47_L004_R2_001.fastq.gz 4420417484 FASTQ R2_L004 unaligned CPTAC3 0417f70c-7d40-4655-9a68-295f0d95253d d206af741883760278f04a2bc81f9237 { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02038.RNA-Seq.transcriptome.T.hg38 C3N-02038 SAR RNA-Seq tumor CPT0099190006 bdd032a9-1921-49dc-a56e-476128d34d47.rna_seq.transcriptome.gdc_realn.bam 10482409217 BAM transcriptome harmonized CPTAC3 1baa227d-c260-4fb7-bdf2-72b9ce3b682d 230092f56fb311a68545e5248abeafda { 'aliquot_tag': 'ALQ_bd3f15d4', 'gdc_sample_type': 'Primary Tumor' } C3N-02038.WGS.N C3N-02038 SAR WGS blood_normal CPT0099230002 CPT0099230002.WholeGenome.RP-1303.bam 66671719735 BAM aligned CPTAC3 09854655-62bb-4627-92ee-c5ad8d1afca6 77c73dff91d7dd226a46569a67d47349 { 'aliquot_tag': 'ALQ_7676bbc2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02038.WGS.N.hg38 C3N-02038 SAR WGS blood_normal CPT0099230002 c40cedf1-d68d-454c-a81e-c9c3d4751aa6_wgs_gdc_realn.bam 97328160214 BAM harmonized CPTAC3 30048835-cf90-46c5-a362-07ad1fa73779 af4bd9d4355e339daca2f3c6ffe5837b { 'aliquot_tag': 'ALQ_7676bbc2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02038.WGS.T C3N-02038 SAR WGS tumor CPT0099190009 CPT0099190009.WholeGenome.RP-1303.bam 71000806755 BAM aligned CPTAC3 a4cb7225-e0ad-4145-9d67-fb163b43702f ffe1098c92f6529b650bc2833dd4e5bb { 'aliquot_tag': 'ALQ_2d800845', 'gdc_sample_type': 'Primary Tumor' } @@ -28913,13 +30990,16 @@ C3N-02061.MethArray.Green.T C3N-02061 UCEC Methylation Array tumor CPT0134310011 C3N-02061.MethArray.Red.T C3N-02061 UCEC Methylation Array tumor CPT0134310011 203561450046_R03C01_Red.idat 13676211 IDAT Red NA CPTAC3 89b1ec19-aa2e-4e6a-aab4-064c998b3e7c 92d6789381ec5e092c57d3ba9bc0871f { 'aliquot_tag': 'ALQ_a09432b7', 'gdc_sample_type': 'Primary Tumor' } C3N-02061.miRNA-Seq.T C3N-02061 UCEC miRNA-Seq tumor CPT0134310018 190508_UNC31-K00269_0215_BH7FYKBBXY_CTATAC_S39_L004_R1_001.unaln.bam 255391443 BAM unaligned CPTAC3 04a69e12-15b8-44bd-b73f-c2607651671d 11fa6e1dcf54163807ed2928328ce156 { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor' } C3N-02061.miRNA-Seq.T.hg38 C3N-02061 UCEC miRNA-Seq tumor CPT0134310018 c1b3e7b6-7674-41a8-bdfa-fa5c0807b65c_mirnaseq_gdc_realn.bam 289707544 BAM harmonized CPTAC3 6ba41fa9-aa08-48bc-b836-37b9bd2ace35 a61b0f233f9b04101085e2886f2bca9e { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor' } -C3N-02061.RNA-Seq.chimeric.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 348b5506-6d86-4044-aa68-b8b470edcfbb.rna_seq.chimeric.gdc_realn.bam 42200496 BAM chimeric harmonized CPTAC3 a4a5443d-9c8e-45c6-9124-09553c4c5dee 3d5a6e5bf37c627b50e8dbd3a3b07226 { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor' } -C3N-02061.RNA-Seq.genomic.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 348b5506-6d86-4044-aa68-b8b470edcfbb.rna_seq.genomic.gdc_realn.bam 9790774285 BAM genomic harmonized CPTAC3 8199db1d-0273-4338-80f9-c9e786c0fa6b d7186b295ea86e1b0a42ac01b4f715ad { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor' } -C3N-02061.RNA-Seq.R1_L001.T C3N-02061 UCEC RNA-Seq tumor CPT0134310018 190523_UNC32-K00270_0176_BH7CW7BBXY_CTCACCAA-CTAGGCAA_S1_L001_R1_001.fastq.gz 4609613795 FASTQ R1_L001 unaligned CPTAC3 834a1ce4-7a33-41bf-b0ef-645a82557e31 fd297dba9a65cf8b219c9270f831fec2 { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor' } -C3N-02061.RNA-Seq.R1_.T C3N-02061 UCEC RNA-Seq tumor CPT0134350001 20210714_P1_G2_WB7988_plate1_S73_R1_001.fastq.gz 9773795946 FASTQ R1_ unaligned CPTAC3 41658fc0-3421-4e41-8432-4a5c89da6f30 ee7deacae9e218a4c9c63c9a32f46137 { 'aliquot_tag': 'ALQ_4c0fa536', 'gdc_sample_type': 'Primary Tumor' } -C3N-02061.RNA-Seq.R2_L001.T C3N-02061 UCEC RNA-Seq tumor CPT0134310018 190523_UNC32-K00270_0176_BH7CW7BBXY_CTCACCAA-CTAGGCAA_S1_L001_R2_001.fastq.gz 5366879606 FASTQ R2_L001 unaligned CPTAC3 2f38bdfb-0213-4a76-843d-c94203223963 907e1673bd9b8af6a2c1bddefc545f87 { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor' } -C3N-02061.RNA-Seq.R2_.T C3N-02061 UCEC RNA-Seq tumor CPT0134350001 20210714_P1_G2_WB7988_plate1_S73_R2_001.fastq.gz 10112047023 FASTQ R2_ unaligned CPTAC3 7d9506d0-5ea1-4ffb-98c0-f0d8fa633d14 7f91be60fc99705f86e2c6ef8c462113 { 'aliquot_tag': 'ALQ_4c0fa536', 'gdc_sample_type': 'Primary Tumor' } -C3N-02061.RNA-Seq.transcriptome.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 348b5506-6d86-4044-aa68-b8b470edcfbb.rna_seq.transcriptome.gdc_realn.bam 10043050333 BAM transcriptome harmonized CPTAC3 81ef8813-98ff-455b-bb2d-0688681e5646 58bb6aa0461bdfbf41e0c0793702ad25 { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor' } +C3N-02061.RNA-Seq.chimeric.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 989f8d85-ff66-450c-89b4-449de72ed299.rna_seq.chimeric.gdc_realn.bam 42187480 BAM chimeric harmonized CPTAC3 0dc0e20d-9957-40e7-ba00-0f3fc20a1b88 4bcd4f31acdd1eb5aa7bc7a11cfb803d { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor' } +C3N-02061.RNA-Seq.chimeric.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134350001 5a38927b-a5a6-4e7e-b6f0-964dd17215e4.rna_seq.chimeric.gdc_realn.bam 332592123 BAM chimeric harmonized CPTAC3 ca33185c-ef1b-4854-a3d9-3d6f7964242f c043ded59b0c63cf70b6cc07c70ae10a { 'aliquot_tag': 'ALQ_4c0fa536', 'gdc_sample_type': 'Primary Tumor' } +C3N-02061.RNA-Seq.genomic.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 989f8d85-ff66-450c-89b4-449de72ed299.rna_seq.genomic.gdc_realn.bam 9792323721 BAM genomic harmonized CPTAC3 213b400c-21df-44bb-bf31-7e3e1ba20ec6 2a255ea0f202c40fd1190d674a3c6bb1 { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor' } +C3N-02061.RNA-Seq.genomic.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134350001 5a38927b-a5a6-4e7e-b6f0-964dd17215e4.rna_seq.genomic.gdc_realn.bam 15071740605 BAM genomic harmonized CPTAC3 1f6e094e-93e2-4d3c-a140-96b4a3bfa5eb e5dc6db6f90a1990030d652456579089 { 'aliquot_tag': 'ALQ_4c0fa536', 'gdc_sample_type': 'Primary Tumor' } +C3N-02061.RNA-Seq.R1_L001.T C3N-02061 UCEC RNA-Seq tumor CPT0134310018 190523_UNC32-K00270_0176_BH7CW7BBXY_CTCACCAA-CTAGGCAA_S1_L001_R1_001.fastq.gz 4609613795 FASTQ R1_L001 unaligned CPTAC3 834a1ce4-7a33-41bf-b0ef-645a82557e31 fd297dba9a65cf8b219c9270f831fec2 { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02061.RNA-Seq.R2_L001.T C3N-02061 UCEC RNA-Seq tumor CPT0134310018 190523_UNC32-K00270_0176_BH7CW7BBXY_CTCACCAA-CTAGGCAA_S1_L001_R2_001.fastq.gz 5366879606 FASTQ R2_L001 unaligned CPTAC3 2f38bdfb-0213-4a76-843d-c94203223963 907e1673bd9b8af6a2c1bddefc545f87 { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02061.RNA-Seq.T C3N-02061 UCEC RNA-Seq tumor CPT0134350001 20210714_P1_G2_WB7988_plate1_S73_R1_001.fastq.gz 9773795946 FASTQ unaligned CPTAC3 41658fc0-3421-4e41-8432-4a5c89da6f30 ee7deacae9e218a4c9c63c9a32f46137 +C3N-02061.RNA-Seq.T C3N-02061 UCEC RNA-Seq tumor CPT0134350001 20210714_P1_G2_WB7988_plate1_S73_R2_001.fastq.gz 10112047023 FASTQ unaligned CPTAC3 7d9506d0-5ea1-4ffb-98c0-f0d8fa633d14 7f91be60fc99705f86e2c6ef8c462113 +C3N-02061.RNA-Seq.transcriptome.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134310018 989f8d85-ff66-450c-89b4-449de72ed299.rna_seq.transcriptome.gdc_realn.bam 11512152720 BAM transcriptome harmonized CPTAC3 0ce854e4-fcac-4eb2-bdbe-4f07038f3bfc 51c60ddd1a1961012e1816f5487f943a { 'aliquot_tag': 'ALQ_d9488a13', 'gdc_sample_type': 'Primary Tumor' } +C3N-02061.RNA-Seq.transcriptome.T.hg38 C3N-02061 UCEC RNA-Seq tumor CPT0134350001 5a38927b-a5a6-4e7e-b6f0-964dd17215e4.rna_seq.transcriptome.gdc_realn.bam 7919328899 BAM transcriptome harmonized CPTAC3 f258936a-65b8-4116-89d4-0e8277a09eb4 7d0882bbb841aad09c136828c8c7576f { 'aliquot_tag': 'ALQ_4c0fa536', 'gdc_sample_type': 'Primary Tumor' } C3N-02061.WGS.N C3N-02061 UCEC WGS blood_normal CPT0134420002 CPT0134420002.WholeGenome.RP-1303.bam 78380844177 BAM aligned CPTAC3 17ee790f-8796-457a-9ca8-b5c9934c58d9 7db51d94e4fdb79c5e06517c0e89288d { 'aliquot_tag': 'ALQ_7a231824', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02061.WGS.N.hg38 C3N-02061 UCEC WGS blood_normal CPT0134420002 a3f680a5-4014-4b54-a23a-b952959e9e44_wgs_gdc_realn.bam 113099080074 BAM harmonized CPTAC3 88f6cea8-8738-47a4-b0cf-91ed4803c76d 72e9403d94af02c59665277d23a0afe9 { 'aliquot_tag': 'ALQ_7a231824', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02061.WGS.T C3N-02061 UCEC WGS tumor CPT0134310011 CPT0134310011.WholeGenome.RP-1303.bam 62515435165 BAM aligned CPTAC3 6e6798be-4fcb-499f-bbef-b6d2a7a387b0 b6706ad5f0bcc9fc7f9edc581a1cf177 { 'aliquot_tag': 'ALQ_a09432b7', 'gdc_sample_type': 'Primary Tumor' } @@ -28932,13 +31012,16 @@ C3N-02062.MethArray.Green.T C3N-02062 UCEC Methylation Array tumor CPT0134500006 C3N-02062.MethArray.Red.T C3N-02062 UCEC Methylation Array tumor CPT0134500006 203561450041_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 49b53031-7806-4a7c-985b-3d0e1a5c2526 10be4632a1287f10a7ba62c4a799f2ee { 'aliquot_tag': 'ALQ_ccd25cf8', 'gdc_sample_type': 'Primary Tumor' } C3N-02062.miRNA-Seq.T C3N-02062 UCEC miRNA-Seq tumor CPT0134500009 190813_UNC32-K00270_0196_AH5MCWBBXY_GGCTAC_S40_L002_R1_001.unaln.bam 218829857 BAM unaligned CPTAC3 ff79a027-2ce9-40fa-94df-0ed2f5c64634 06b85f37bf525ca583fc69b14d2dddcc { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor' } C3N-02062.miRNA-Seq.T.hg38 C3N-02062 UCEC miRNA-Seq tumor CPT0134500009 fd53b506-4a84-447d-8499-189f4f4c1a3b_mirnaseq_gdc_realn.bam 254148082 BAM harmonized CPTAC3 0b46b752-b12b-4e89-971f-2e2e5561f0c2 4ef7c1e46e2673e31929062f8d7c4435 { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor' } -C3N-02062.RNA-Seq.chimeric.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 9964785d-f223-4d6a-b6ab-76ef8abb989b.rna_seq.chimeric.gdc_realn.bam 40355541 BAM chimeric harmonized CPTAC3 ae1efe96-eb1b-42d9-a2c7-a19ed0fd8cdb d61a3e547b94834170ad41c5815d3539 { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor' } -C3N-02062.RNA-Seq.genomic.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 9964785d-f223-4d6a-b6ab-76ef8abb989b.rna_seq.genomic.gdc_realn.bam 9074400164 BAM genomic harmonized CPTAC3 029e79ad-26ac-4819-8b21-41e019ef8a8a cff81cf9f3ac2a84f491805ee3e29165 { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor' } -C3N-02062.RNA-Seq.R1_L006.T C3N-02062 UCEC RNA-Seq tumor CPT0134500009 190717_UNC31-K00269_0233_BH7HG5BBXY_ACCTTGGC-GGCCTCAT_S11_L006_R1_001.fastq.gz 4626237484 FASTQ R1_L006 unaligned CPTAC3 5a79e76c-57d5-4946-8e5e-a93166527e5f 3728d1bcfbf2abadeb19343bd01ef286 { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor' } -C3N-02062.RNA-Seq.R1_.T C3N-02062 UCEC RNA-Seq tumor CPT0134540001 20210714_P1_H10_WB7988_plate1_S93_R1_001.fastq.gz 4606445718 FASTQ R1_ unaligned CPTAC3 e87d33d0-b7c4-45cc-9b59-f9304340653c c88ebc06bcdd8e129f6b1512709982b0 { 'aliquot_tag': 'ALQ_a7366f9b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02062.RNA-Seq.R2_L006.T C3N-02062 UCEC RNA-Seq tumor CPT0134500009 190717_UNC31-K00269_0233_BH7HG5BBXY_ACCTTGGC-GGCCTCAT_S11_L006_R2_001.fastq.gz 4772439781 FASTQ R2_L006 unaligned CPTAC3 3e551f11-8ab1-45c5-bc56-a3c02f54a319 5b6e7dfae963ced092ad2c556e9af177 { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor' } -C3N-02062.RNA-Seq.R2_.T C3N-02062 UCEC RNA-Seq tumor CPT0134540001 20210714_P1_H10_WB7988_plate1_S93_R2_001.fastq.gz 4759032552 FASTQ R2_ unaligned CPTAC3 ab791165-813a-4d98-bf6d-8c26e849beeb eae1014759cb40b9558e3be7e5ad76b6 { 'aliquot_tag': 'ALQ_a7366f9b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02062.RNA-Seq.transcriptome.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 9964785d-f223-4d6a-b6ab-76ef8abb989b.rna_seq.transcriptome.gdc_realn.bam 10387597446 BAM transcriptome harmonized CPTAC3 58fb4788-cc17-43cb-8cd5-944b441d148b 6cba270c20df0f9aacf856d26ac829a5 { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor' } +C3N-02062.RNA-Seq.chimeric.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 4cdf0394-8bc3-44b2-9013-ab3dccf87a2d.rna_seq.chimeric.gdc_realn.bam 40343779 BAM chimeric harmonized CPTAC3 445d3fca-3c66-48f7-97d1-6a33a0c01c52 a80518157a22637659322f7bada0c998 { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor' } +C3N-02062.RNA-Seq.chimeric.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134540001 4c5efc9a-2bad-4709-8c82-57d1f1dbd53a.rna_seq.chimeric.gdc_realn.bam 174106963 BAM chimeric harmonized CPTAC3 e10869db-5455-4d06-b0bb-a5b3ff284b50 b72b3c118a6863f2a169c255334d086a { 'aliquot_tag': 'ALQ_a7366f9b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02062.RNA-Seq.genomic.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 4cdf0394-8bc3-44b2-9013-ab3dccf87a2d.rna_seq.genomic.gdc_realn.bam 9075751203 BAM genomic harmonized CPTAC3 e5d5753d-50d4-4a94-8f29-ab211c5f0149 3520250907af5f5d01ff8b19ec145300 { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor' } +C3N-02062.RNA-Seq.genomic.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134540001 4c5efc9a-2bad-4709-8c82-57d1f1dbd53a.rna_seq.genomic.gdc_realn.bam 9833068853 BAM genomic harmonized CPTAC3 28e93d4e-e834-43ca-a2f7-bae4a66c739e a3579bcd584f4bc35bc7de72ef6b8431 { 'aliquot_tag': 'ALQ_a7366f9b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02062.RNA-Seq.R1_L006.T C3N-02062 UCEC RNA-Seq tumor CPT0134500009 190717_UNC31-K00269_0233_BH7HG5BBXY_ACCTTGGC-GGCCTCAT_S11_L006_R1_001.fastq.gz 4626237484 FASTQ R1_L006 unaligned CPTAC3 5a79e76c-57d5-4946-8e5e-a93166527e5f 3728d1bcfbf2abadeb19343bd01ef286 { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02062.RNA-Seq.R2_L006.T C3N-02062 UCEC RNA-Seq tumor CPT0134500009 190717_UNC31-K00269_0233_BH7HG5BBXY_ACCTTGGC-GGCCTCAT_S11_L006_R2_001.fastq.gz 4772439781 FASTQ R2_L006 unaligned CPTAC3 3e551f11-8ab1-45c5-bc56-a3c02f54a319 5b6e7dfae963ced092ad2c556e9af177 { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02062.RNA-Seq.T C3N-02062 UCEC RNA-Seq tumor CPT0134540001 20210714_P1_H10_WB7988_plate1_S93_R1_001.fastq.gz 4606445718 FASTQ unaligned CPTAC3 e87d33d0-b7c4-45cc-9b59-f9304340653c c88ebc06bcdd8e129f6b1512709982b0 +C3N-02062.RNA-Seq.T C3N-02062 UCEC RNA-Seq tumor CPT0134540001 20210714_P1_H10_WB7988_plate1_S93_R2_001.fastq.gz 4759032552 FASTQ unaligned CPTAC3 ab791165-813a-4d98-bf6d-8c26e849beeb eae1014759cb40b9558e3be7e5ad76b6 +C3N-02062.RNA-Seq.transcriptome.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134500009 4cdf0394-8bc3-44b2-9013-ab3dccf87a2d.rna_seq.transcriptome.gdc_realn.bam 11924654707 BAM transcriptome harmonized CPTAC3 5b7ee737-7dbd-4dbd-9cf7-a37333068d82 1858a1f0aa3f954593d1754f4be8a2de { 'aliquot_tag': 'ALQ_5c6d4169', 'gdc_sample_type': 'Primary Tumor' } +C3N-02062.RNA-Seq.transcriptome.T.hg38 C3N-02062 UCEC RNA-Seq tumor CPT0134540001 4c5efc9a-2bad-4709-8c82-57d1f1dbd53a.rna_seq.transcriptome.gdc_realn.bam 3809961853 BAM transcriptome harmonized CPTAC3 ffce9077-7d86-4efb-ba14-964228618bcd 19172a0e83d59dd4991347b0ae61a676 { 'aliquot_tag': 'ALQ_a7366f9b', 'gdc_sample_type': 'Primary Tumor' } C3N-02062.WGS.N C3N-02062 UCEC WGS blood_normal CPT0134600002 CPT0134600002.WholeGenome.RP-1303.bam 59085700359 BAM aligned CPTAC3 a21c36fd-7f91-4de9-87a1-44cb8327b198 d5d88cbce4bad583c87430113ca4f4b3 { 'aliquot_tag': 'ALQ_4d2bea4f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02062.WGS.N.hg38 C3N-02062 UCEC WGS blood_normal CPT0134600002 6897a033-cb98-4570-a39d-a8af68edbc71_wgs_gdc_realn.bam 84606898797 BAM harmonized CPTAC3 c76a1995-03d6-446f-a38a-1e77971bdf7d f4d2439af6c4d31d7903cfe1622fb1e8 { 'aliquot_tag': 'ALQ_4d2bea4f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02062.WGS.T C3N-02062 UCEC WGS tumor CPT0134500006 CPT0134500006.WholeGenome.RP-1303.bam 61155117727 BAM aligned CPTAC3 147556fc-3836-492c-b2a4-f1568030d4ac f73c10f2fa825c2e566d991c33083de7 { 'aliquot_tag': 'ALQ_ccd25cf8', 'gdc_sample_type': 'Primary Tumor' } @@ -28951,11 +31034,11 @@ C3N-02063.MethArray.Green.T C3N-02063 CCRCC Methylation Array tumor CPT013466000 C3N-02063.MethArray.Red.T C3N-02063 CCRCC Methylation Array tumor CPT0134660009 203220070217_R01C01_Red.idat 13676218 IDAT Red NA CPTAC3 cbb7f277-6f79-4b27-9685-d7c156a4a190 b41a94ad6240b48ec5434e704505633c { 'aliquot_tag': 'ALQ_55b9c667', 'gdc_sample_type': 'Primary Tumor' } C3N-02063.miRNA-Seq.T C3N-02063 CCRCC miRNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0176_AHYGLVBBXX_TATAAT_S44_L005_R1_001.unaln.bam 315506039 BAM unaligned CPTAC3 454d9aec-e30a-4a5c-b383-87188a90fc95 9480a49d0d02eadd737bb68672c958d7 { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor' } C3N-02063.miRNA-Seq.T.hg38 C3N-02063 CCRCC miRNA-Seq tumor CPT0134660006 aa4cc326-e3e2-4f20-a828-3ddbda711b5b_mirnaseq_gdc_realn.bam 341821843 BAM harmonized CPTAC3 80cffc8f-5b3c-4b2e-b302-65a1ae068209 44908e2494041107319a7d771a4568a5 { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02063.RNA-Seq.chimeric.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 7d12d9d4-305c-4646-9d04-62d98f505a8b.rna_seq.chimeric.gdc_realn.bam 33813451 BAM chimeric harmonized CPTAC3 6a04afe4-72e5-488d-b068-9f7ba0569d0f 0800dd51774a29774e275124f43ab252 { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02063.RNA-Seq.genomic.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 7d12d9d4-305c-4646-9d04-62d98f505a8b.rna_seq.genomic.gdc_realn.bam 7755316183 BAM genomic harmonized CPTAC3 2fcd5e68-efdf-4c9e-8f46-5b3de66eef9a 4bc97095ae7ee292c8d3972f3ae09802 { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02063.RNA-Seq.R1_L006.T C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L006_R1_001.fastq.gz 3595718305 FASTQ R1_L006 unaligned CPTAC3 f1ae4d68-825f-4b31-bd89-8f128807a19b 359f95d04276e7ed8d8674c7a42e798e { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02063.RNA-Seq.R2_L006.T C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L006_R2_001.fastq.gz 3734528789 FASTQ R2_L006 unaligned CPTAC3 622bc846-d713-469e-ad45-0c9c260f326a 6201d73b3f225dab0622a1c6a72e434a { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02063.RNA-Seq.transcriptome.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 7d12d9d4-305c-4646-9d04-62d98f505a8b.rna_seq.transcriptome.gdc_realn.bam 7899776966 BAM transcriptome harmonized CPTAC3 878d2141-234e-4f54-af80-d69be871c438 99fd203e45c62bc850d99cc1f27fa963 { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02063.RNA-Seq.chimeric.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 2061b325-9160-4c38-95ca-04a479b95208.rna_seq.chimeric.gdc_realn.bam 33795996 BAM chimeric harmonized CPTAC3 26f9a263-0ed1-445e-99df-e6ed29c85abc db3ab4d406da692f9215d9ab003b829b { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02063.RNA-Seq.genomic.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 2061b325-9160-4c38-95ca-04a479b95208.rna_seq.genomic.gdc_realn.bam 7756371481 BAM genomic harmonized CPTAC3 32bfbf45-7e62-43a1-bc20-d0bc040b6bb7 5b54280125feead988df2bdac74e1645 { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02063.RNA-Seq.R1_L006.T C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L006_R1_001.fastq.gz 3595718305 FASTQ R1_L006 unaligned CPTAC3 f1ae4d68-825f-4b31-bd89-8f128807a19b 359f95d04276e7ed8d8674c7a42e798e { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02063.RNA-Seq.R2_L006.T C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L006_R2_001.fastq.gz 3734528789 FASTQ R2_L006 unaligned CPTAC3 622bc846-d713-469e-ad45-0c9c260f326a 6201d73b3f225dab0622a1c6a72e434a { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02063.RNA-Seq.transcriptome.T.hg38 C3N-02063 CCRCC RNA-Seq tumor CPT0134660006 2061b325-9160-4c38-95ca-04a479b95208.rna_seq.transcriptome.gdc_realn.bam 9000648080 BAM transcriptome harmonized CPTAC3 b6243868-b729-4153-af4b-b8d7c8c87ead 4710e61a3c04bd09c2088781b8b2d32c { 'aliquot_tag': 'ALQ_c506dbf6', 'gdc_sample_type': 'Primary Tumor' } C3N-02063.WGS.N C3N-02063 CCRCC WGS blood_normal CPT0134780002 CPT0134780002.WholeGenome.RP-1303.bam 59849497843 BAM aligned CPTAC3 2060bdad-4d06-444b-a567-c998651b2524 6fa44eb7e05a9875b1368a5ebeaaec74 { 'aliquot_tag': 'ALQ_b607722b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02063.WGS.N.hg38 C3N-02063 CCRCC WGS blood_normal CPT0134780002 a3b6c6e3-bba9-4d7c-a614-67c80c0e2b04_wgs_gdc_realn.bam 86158367385 BAM harmonized CPTAC3 06d9ddce-c14d-470c-9fac-11081ff40e05 bb62f5333fc71783ac3a6a3d455d4d82 { 'aliquot_tag': 'ALQ_b607722b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02063.WGS.T C3N-02063 CCRCC WGS tumor CPT0134660009 CPT0134660009.WholeGenome.RP-1303.bam 64493736731 BAM aligned CPTAC3 5137f70b-2111-48e9-b679-2011d55c54a0 9967bde81be1a22190d2ac289791f37c { 'aliquot_tag': 'ALQ_55b9c667', 'gdc_sample_type': 'Primary Tumor' } @@ -28972,16 +31055,16 @@ C3N-02066.miRNA-Seq.A C3N-02066 CCRCC miRNA-Seq tissue_normal CPT0109820009 1901 C3N-02066.miRNA-Seq.A.hg38 C3N-02066 CCRCC miRNA-Seq tissue_normal CPT0109820009 39eeaf7d-e667-4724-894f-62eb336643cf_mirnaseq_gdc_realn.bam 202289687 BAM harmonized CPTAC3 5daa3729-b81b-4201-97ae-c596b60af7c2 9c46d4652ba345efce88fc7ffd2f6d1c { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02066.miRNA-Seq.T C3N-02066 CCRCC miRNA-Seq tumor CPT0109800010 190108_UNC31-K00269_0176_AHYGLVBBXX_CAGATC_S7_L004_R1_001.unaln.bam 241275310 BAM unaligned CPTAC3 d5cc6a00-a153-4e73-b5ad-e68b371c58fe 936fd2391f62e5718cbf1f3b9dc1e361 { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor' } C3N-02066.miRNA-Seq.T.hg38 C3N-02066 CCRCC miRNA-Seq tumor CPT0109800010 1cc7d171-3afa-4e0b-bda4-5dcc2a2e4d98_mirnaseq_gdc_realn.bam 269735036 BAM harmonized CPTAC3 ed6cf318-860a-4594-bc19-c6293b427e22 bbe3633722267b152dc54b3b46a0760b { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor' } -C3N-02066.RNA-Seq.chimeric.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 489e76a3-e8a5-4674-8cfd-212baa63dd8f.rna_seq.chimeric.gdc_realn.bam 398553011 BAM chimeric harmonized CPTAC3 82df7bf6-7d56-41fb-a030-d67e0fa33a0d b16598deff583f8c6fdb5646ad011298 { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02066.RNA-Seq.chimeric.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 41fe9f1e-5e87-4560-b4cc-de540aac5849.rna_seq.chimeric.gdc_realn.bam 106845932 BAM chimeric harmonized CPTAC3 1c021632-d3e5-41cb-adc6-420bd382b428 7cacd470947066ffa2e18fed211b3bb8 { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor' } -C3N-02066.RNA-Seq.genomic.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 489e76a3-e8a5-4674-8cfd-212baa63dd8f.rna_seq.genomic.gdc_realn.bam 10159423893 BAM genomic harmonized CPTAC3 afc5380b-ea1c-46d6-b6c1-17236740a60d eea9fb7d00c208dad8db0b13b05b7a9a { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02066.RNA-Seq.genomic.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 41fe9f1e-5e87-4560-b4cc-de540aac5849.rna_seq.genomic.gdc_realn.bam 9226059396 BAM genomic harmonized CPTAC3 072afd0c-4675-4cda-a6f0-238bae00a1f7 ff79448e069be971e39e478a2cf849ac { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor' } -C3N-02066.RNA-Seq.R1_L002.T C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4064161598 FASTQ R1_L002 unaligned CPTAC3 c9b71185-f490-458c-98ad-18c122843bf3 1279c1267d2961ad51cbf9134cc4074a { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor' } -C3N-02066.RNA-Seq.R1_L003.A C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 190117_UNC31-K00269_0180_AH35VKBBXY_ATCACG_S9_L003_R1_001.fastq.gz 4775006622 FASTQ R1_L003 unaligned CPTAC3 8db98bdf-d737-4598-abfa-f5cdcd19be9b 2ffc9f64d580e144eba8fb32daef7855 { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02066.RNA-Seq.R2_L002.T C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4503879871 FASTQ R2_L002 unaligned CPTAC3 c2ebcef0-e7f2-44e9-918f-3d9840077bb5 fd453deb377cbab2da200a3aa32a4f77 { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor' } -C3N-02066.RNA-Seq.R2_L003.A C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 190117_UNC31-K00269_0180_AH35VKBBXY_ATCACG_S9_L003_R2_001.fastq.gz 4764232251 FASTQ R2_L003 unaligned CPTAC3 2dec353f-c2ce-4d95-847d-1b9ebfcf5aeb 5ee5ee4ac9388370d201d7109940f905 { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02066.RNA-Seq.transcriptome.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 489e76a3-e8a5-4674-8cfd-212baa63dd8f.rna_seq.transcriptome.gdc_realn.bam 9635524300 BAM transcriptome harmonized CPTAC3 d86bb85a-e5b6-43eb-9304-0b6f93447b5d a0ee3f9d7030af50130d5cf0cc1be809 { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02066.RNA-Seq.transcriptome.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 41fe9f1e-5e87-4560-b4cc-de540aac5849.rna_seq.transcriptome.gdc_realn.bam 9614282337 BAM transcriptome harmonized CPTAC3 496a8ca4-3bc9-4956-9246-56280016283f d9fc32c0855c9d1c3df1ce9f53c4270d { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor' } +C3N-02066.RNA-Seq.chimeric.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 337d8f1f-6771-4bab-aed2-e48ccbde766a.rna_seq.chimeric.gdc_realn.bam 398508975 BAM chimeric harmonized CPTAC3 614c51c9-0bec-494d-9dbc-614d3e12da2b fe1f21d1ece809123c28b13b0d017175 { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02066.RNA-Seq.chimeric.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 00c86d63-088e-4f59-af89-61f37536bb9a.rna_seq.chimeric.gdc_realn.bam 106815192 BAM chimeric harmonized CPTAC3 0e58a688-536a-4e81-8c84-87ed678ecffd d2054923915f1036c4368b96bd93d21f { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor' } +C3N-02066.RNA-Seq.genomic.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 337d8f1f-6771-4bab-aed2-e48ccbde766a.rna_seq.genomic.gdc_realn.bam 10160608975 BAM genomic harmonized CPTAC3 66e5a317-6078-4c0b-ab60-34adab28d825 319c70f0c91db924314cc490ed084b74 { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02066.RNA-Seq.genomic.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 00c86d63-088e-4f59-af89-61f37536bb9a.rna_seq.genomic.gdc_realn.bam 9227660591 BAM genomic harmonized CPTAC3 12647113-0229-4fd1-920c-26a8160cff3c 60bb2fc3fc03e96322246a3b19e2e864 { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor' } +C3N-02066.RNA-Seq.R1_L002.T C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4064161598 FASTQ R1_L002 unaligned CPTAC3 c9b71185-f490-458c-98ad-18c122843bf3 1279c1267d2961ad51cbf9134cc4074a { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02066.RNA-Seq.R1_L003.A C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 190117_UNC31-K00269_0180_AH35VKBBXY_ATCACG_S9_L003_R1_001.fastq.gz 4775006622 FASTQ R1_L003 unaligned CPTAC3 8db98bdf-d737-4598-abfa-f5cdcd19be9b 2ffc9f64d580e144eba8fb32daef7855 { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02066.RNA-Seq.R2_L002.T C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 190117_UNC31-K00269_0180_AH35VKBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4503879871 FASTQ R2_L002 unaligned CPTAC3 c2ebcef0-e7f2-44e9-918f-3d9840077bb5 fd453deb377cbab2da200a3aa32a4f77 { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02066.RNA-Seq.R2_L003.A C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 190117_UNC31-K00269_0180_AH35VKBBXY_ATCACG_S9_L003_R2_001.fastq.gz 4764232251 FASTQ R2_L003 unaligned CPTAC3 2dec353f-c2ce-4d95-847d-1b9ebfcf5aeb 5ee5ee4ac9388370d201d7109940f905 { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02066.RNA-Seq.transcriptome.A.hg38 C3N-02066 CCRCC RNA-Seq tissue_normal CPT0109820009 337d8f1f-6771-4bab-aed2-e48ccbde766a.rna_seq.transcriptome.gdc_realn.bam 11031612809 BAM transcriptome harmonized CPTAC3 41bf996b-0f7e-4aa3-bb21-e1d23cd821ce ea9425a363209c62c48d5c48b10a3f2b { 'aliquot_tag': 'ALQ_756b67f4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02066.RNA-Seq.transcriptome.T.hg38 C3N-02066 CCRCC RNA-Seq tumor CPT0109800010 00c86d63-088e-4f59-af89-61f37536bb9a.rna_seq.transcriptome.gdc_realn.bam 10916545494 BAM transcriptome harmonized CPTAC3 efb343c7-9523-4463-b39a-a257b0a8b16d a44ef439c3d701f81f8294379d3797a2 { 'aliquot_tag': 'ALQ_6f6cbd71', 'gdc_sample_type': 'Primary Tumor' } C3N-02066.WGS.A C3N-02066 CCRCC WGS tissue_normal CPT0109820006 CPT0109820006.WholeGenome.RP-1303.bam 69597074763 BAM aligned CPTAC3 f0f8bacd-6081-44d7-aa16-8ed6aa57e4a4 98f388fef1aa076066cd449cd1a67ec2 { 'aliquot_tag': 'ALQ_e5d47a65', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02066.WGS.A.hg38 C3N-02066 CCRCC WGS tissue_normal CPT0109820006 fb8b7ff5-89a3-4104-ba8c-ddc1ec7f4476_wgs_gdc_realn.bam 101804887550 BAM harmonized CPTAC3 da53f388-6e74-4f17-a68a-7b09de7c3d28 54da318024a1deb5db9b7e1cc435b184 { 'aliquot_tag': 'ALQ_e5d47a65', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02066.WGS.N C3N-02066 CCRCC WGS blood_normal CPT0139350002 CPT0139350002.WholeGenome.RP-1303.bam 52326467938 BAM aligned CPTAC3 fb721a26-6d3e-41ac-aa74-45b71eb9bb52 ba3429187a3094091f19286d26520418 { 'aliquot_tag': 'ALQ_b4d1954c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29004,12 +31087,12 @@ C3N-02067.miRNA-Seq.T C3N-02067 LUAD miRNA-Seq tumor CPT0109830007 181108_UNC31- C3N-02067.miRNA-Seq.T.hg38 C3N-02067 LUAD miRNA-Seq tumor CPT0109830007 2019c6e7-4147-4944-a9d3-ca14a56c4d9c_mirnaseq_gdc_realn.bam 275375693 BAM harmonized CPTAC3 abb9eb5a-08b1-4f38-b69f-df7f6d4e2a73 51610573744dd2931669ffc23473f7a8 { 'aliquot_tag': 'ALQ_afb36343', 'gdc_sample_type': 'Primary Tumor' } C3N-02067.RNA-Seq.chimeric.A.hg38 C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 d9a0e52e-bc94-4c35-a1e8-8fff7c68ee33.rna_seq.chimeric.gdc_realn.bam 141009444 BAM chimeric harmonized CPTAC3 c5e66c40-566d-4969-b9f0-5913c8c992d7 595b6d417b08c85fe95077e45dac6458 { 'aliquot_tag': 'ALQ_57f4a675', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02067.RNA-Seq.chimeric.T.hg38 C3N-02067 LUAD RNA-Seq tumor CPT0109830007 400e59cd-55e1-4a2e-a400-d284fd4efb76.rna_seq.chimeric.gdc_realn.bam 67702069 BAM chimeric harmonized CPTAC3 079442fd-26ae-4e5f-93a8-7040b0b02ec2 5cf2d1bf0cc57d308750956bf02a5089 { 'aliquot_tag': 'ALQ_afb36343', 'gdc_sample_type': 'Primary Tumor' } -C3N-02067.RNA-Seq.genomic.A.hg38 C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 d9a0e52e-bc94-4c35-a1e8-8fff7c68ee33.rna_seq.genomic.gdc_realn.bam 9151936038 BAM genomic harmonized CPTAC3 3e6b6c7f-97c7-4c39-99ee-fb8ec828d152 990fa8895b052ace8690ed38173a8074 { 'aliquot_tag': 'ALQ_57f4a675', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02067.RNA-Seq.genomic.T.hg38 C3N-02067 LUAD RNA-Seq tumor CPT0109830007 400e59cd-55e1-4a2e-a400-d284fd4efb76.rna_seq.genomic.gdc_realn.bam 9768901405 BAM genomic harmonized CPTAC3 a81d2d5a-0882-4f79-b4f5-19d2163ee2a2 b3a9be3d785285e1a1a47a3fa5211ca7 { 'aliquot_tag': 'ALQ_afb36343', 'gdc_sample_type': 'Primary Tumor' } -C3N-02067.RNA-Seq.R1_L002.A C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L002_R1_001.fastq.gz 4459595695 FASTQ R1_L002 unaligned CPTAC3 6f623641-079d-4792-a52e-d6faa04c154d 8fab7106213123ee73555e10949385ff { 'aliquot_tag': 'ALQ_57f4a675', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02067.RNA-Seq.R1_L007.T C3N-02067 LUAD RNA-Seq tumor CPT0109830007 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L007_R1_001.fastq.gz 4539108482 FASTQ R1_L007 unaligned CPTAC3 96a4541d-fa4c-4bea-b0ed-a1c663dd3a35 a4f5f31dd2986875b30215f0f0199c69 { 'aliquot_tag': 'ALQ_afb36343', 'gdc_sample_type': 'Primary Tumor' } -C3N-02067.RNA-Seq.R2_L002.A C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L002_R2_001.fastq.gz 4463319322 FASTQ R2_L002 unaligned CPTAC3 9cc2a034-a8c0-4c4f-986c-73222649734b bdbf0b8ee74ea61c67c8e293c2079f27 { 'aliquot_tag': 'ALQ_57f4a675', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02067.RNA-Seq.R2_L007.T C3N-02067 LUAD RNA-Seq tumor CPT0109830007 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L007_R2_001.fastq.gz 5032423844 FASTQ R2_L007 unaligned CPTAC3 04bd9cf5-9ecd-4d35-83ae-50f29cbb564e 490c049446c3fc593a0e4d9eb5438a94 { 'aliquot_tag': 'ALQ_afb36343', 'gdc_sample_type': 'Primary Tumor' } +C3N-02067.RNA-Seq.genomic.A.hg38 C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 d9a0e52e-bc94-4c35-a1e8-8fff7c68ee33.rna_seq.genomic.gdc_realn.bam 9151936038 BAM genomic harmonized CPTAC3 0ba78390-3251-4355-99b0-a5e7a638d65c 990fa8895b052ace8690ed38173a8074 { 'aliquot_tag': 'ALQ_57f4a675', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02067.RNA-Seq.genomic.T.hg38 C3N-02067 LUAD RNA-Seq tumor CPT0109830007 400e59cd-55e1-4a2e-a400-d284fd4efb76.rna_seq.genomic.gdc_realn.bam 9768901405 BAM genomic harmonized CPTAC3 18ec7d5c-d6f7-4489-ac06-3ab941e96dc1 b3a9be3d785285e1a1a47a3fa5211ca7 { 'aliquot_tag': 'ALQ_afb36343', 'gdc_sample_type': 'Primary Tumor' } +C3N-02067.RNA-Seq.R1_L002.A C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L002_R1_001.fastq.gz 4459595695 FASTQ R1_L002 unaligned CPTAC3 6f623641-079d-4792-a52e-d6faa04c154d 8fab7106213123ee73555e10949385ff { 'aliquot_tag': 'ALQ_57f4a675', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02067.RNA-Seq.R1_L007.T C3N-02067 LUAD RNA-Seq tumor CPT0109830007 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L007_R1_001.fastq.gz 4539108482 FASTQ R1_L007 unaligned CPTAC3 96a4541d-fa4c-4bea-b0ed-a1c663dd3a35 a4f5f31dd2986875b30215f0f0199c69 { 'aliquot_tag': 'ALQ_afb36343', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02067.RNA-Seq.R2_L002.A C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 180508_UNC31-K00269_0128_BHTY7KBBXX_ATCACG_S5_L002_R2_001.fastq.gz 4463319322 FASTQ R2_L002 unaligned CPTAC3 9cc2a034-a8c0-4c4f-986c-73222649734b bdbf0b8ee74ea61c67c8e293c2079f27 { 'aliquot_tag': 'ALQ_57f4a675', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02067.RNA-Seq.R2_L007.T C3N-02067 LUAD RNA-Seq tumor CPT0109830007 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L007_R2_001.fastq.gz 5032423844 FASTQ R2_L007 unaligned CPTAC3 04bd9cf5-9ecd-4d35-83ae-50f29cbb564e 490c049446c3fc593a0e4d9eb5438a94 { 'aliquot_tag': 'ALQ_afb36343', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02067.RNA-Seq.transcriptome.A.hg38 C3N-02067 LUAD RNA-Seq tissue_normal CPT0109850006 d9a0e52e-bc94-4c35-a1e8-8fff7c68ee33.rna_seq.transcriptome.gdc_realn.bam 10711282067 BAM transcriptome harmonized CPTAC3 061953ad-a475-49d5-ad7d-8deba9191cb2 9dc73fca520438551e7eaac208bae308 { 'aliquot_tag': 'ALQ_57f4a675', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02067.RNA-Seq.transcriptome.T.hg38 C3N-02067 LUAD RNA-Seq tumor CPT0109830007 400e59cd-55e1-4a2e-a400-d284fd4efb76.rna_seq.transcriptome.gdc_realn.bam 13240096392 BAM transcriptome harmonized CPTAC3 f6c5e45a-088b-4784-8f30-18242e923f3b 3858638c93dea3fc89756b8a4e078e95 { 'aliquot_tag': 'ALQ_afb36343', 'gdc_sample_type': 'Primary Tumor' } C3N-02067.WGS.A C3N-02067 LUAD WGS tissue_normal CPT0109850009 CPT0109850009.WholeGenome.RP-1303.bam 55482049007 BAM aligned CPTAC3 bf2b7e38-270b-4e0f-9ef5-147dc21d581b 70d9d6b73cad75ec8903ae1adde5cff5 { 'aliquot_tag': 'ALQ_c74bbbe4', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -29028,11 +31111,11 @@ C3N-02068.MethArray.Green.T C3N-02068 CCRCC Methylation Array tumor CPT010986000 C3N-02068.MethArray.Red.T C3N-02068 CCRCC Methylation Array tumor CPT0109860007 203219670122_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 cec573a6-b14e-49b1-8ead-3edd32f8cea9 5ae81cc182c0c8fce661670e4160da92 { 'aliquot_tag': 'ALQ_6753ec33', 'gdc_sample_type': 'Primary Tumor' } C3N-02068.miRNA-Seq.T C3N-02068 CCRCC miRNA-Seq tumor CPT0109860010 190108_UNC31-K00269_0176_AHYGLVBBXX_ACTTGA_S8_L004_R1_001.unaln.bam 201640648 BAM unaligned CPTAC3 fdafbe3f-1c0a-4a35-8b9e-68644e97db31 7a475b2ee17f014c435422bf2debecf5 { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor' } C3N-02068.miRNA-Seq.T.hg38 C3N-02068 CCRCC miRNA-Seq tumor CPT0109860010 897b7147-b998-43c3-b20c-88852d808988_mirnaseq_gdc_realn.bam 225695151 BAM harmonized CPTAC3 2ba43caf-5a90-42a9-8ec6-906bb3124ca7 a667373fce8c70c6e9cd260f9c5e3280 { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02068.RNA-Seq.chimeric.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 8c53ac7b-bcd4-4eaf-b4be-a8848ffa7541.rna_seq.chimeric.gdc_realn.bam 101538932 BAM chimeric harmonized CPTAC3 37ec45a7-3abc-428d-a0d2-2b989ad82d0f fe941a19e1c212b0ce91c6f8db03c059 { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02068.RNA-Seq.genomic.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 8c53ac7b-bcd4-4eaf-b4be-a8848ffa7541.rna_seq.genomic.gdc_realn.bam 8029960799 BAM genomic harmonized CPTAC3 6b2621d6-7024-4d8b-b2e7-64e991ecf26b 28ff86471965256889e1e3f2dc733c4a { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02068.RNA-Seq.R1_L002.T C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 3611242902 FASTQ R1_L002 unaligned CPTAC3 2a93bde3-82b9-4ea3-8e24-26d896e2e5d7 03da32bba9e01c1e91105cd0cea05ccd { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02068.RNA-Seq.R2_L002.T C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 3938541574 FASTQ R2_L002 unaligned CPTAC3 f313414c-ca3c-4d29-9bc1-e962ea516a3f b50d8551955c22e851fe77ed73de9923 { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02068.RNA-Seq.transcriptome.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 8c53ac7b-bcd4-4eaf-b4be-a8848ffa7541.rna_seq.transcriptome.gdc_realn.bam 8754542297 BAM transcriptome harmonized CPTAC3 3b00e936-7e3e-4715-b963-7ebf126950a5 f4e7b2b563fd1e123f455aa1bfe94aa3 { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02068.RNA-Seq.chimeric.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 23ead3ed-4b51-4547-97b9-85b159853185.rna_seq.chimeric.gdc_realn.bam 101534025 BAM chimeric harmonized CPTAC3 4bdffe4e-27ba-4599-af79-17dd52d19f85 a1d9afef293398fa750a28cfbb34a4f3 { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02068.RNA-Seq.genomic.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 23ead3ed-4b51-4547-97b9-85b159853185.rna_seq.genomic.gdc_realn.bam 8031259244 BAM genomic harmonized CPTAC3 b938a386-fcde-436b-b559-d2f336393d23 9efe480673b12abe47ee41adf7cc6645 { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02068.RNA-Seq.R1_L002.T C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 3611242902 FASTQ R1_L002 unaligned CPTAC3 2a93bde3-82b9-4ea3-8e24-26d896e2e5d7 03da32bba9e01c1e91105cd0cea05ccd { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02068.RNA-Seq.R2_L002.T C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 190117_UNC31-K00269_0180_AH35VKBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 3938541574 FASTQ R2_L002 unaligned CPTAC3 f313414c-ca3c-4d29-9bc1-e962ea516a3f b50d8551955c22e851fe77ed73de9923 { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02068.RNA-Seq.transcriptome.T.hg38 C3N-02068 CCRCC RNA-Seq tumor CPT0109860010 23ead3ed-4b51-4547-97b9-85b159853185.rna_seq.transcriptome.gdc_realn.bam 10015042958 BAM transcriptome harmonized CPTAC3 9754ba56-fa26-44f1-8dc7-351f24e2db8b 91c997d86ebbf8445ccc3eda242534e3 { 'aliquot_tag': 'ALQ_e02c48d1', 'gdc_sample_type': 'Primary Tumor' } C3N-02068.WGS.N C3N-02068 CCRCC WGS blood_normal CPT0139430002 CPT0139430002.WholeGenome.RP-1303.bam 62216048242 BAM aligned CPTAC3 1b184e8c-6791-4306-a874-0151a9fffe7a 10098345073a2d0251ca43a8e11c26f8 { 'aliquot_tag': 'ALQ_26945054', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02068.WGS.N.hg38 C3N-02068 CCRCC WGS blood_normal CPT0139430002 b4cccd0f-cb56-44fb-aa9f-e709ad21eebe_wgs_gdc_realn.bam 94723892634 BAM harmonized CPTAC3 4874805b-653c-41d3-9fc6-a666f66e8bfa b495ec37582d0b341b06ddebda9b840a { 'aliquot_tag': 'ALQ_26945054', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02068.WGS.T C3N-02068 CCRCC WGS tumor CPT0109860007 CPT0109860007.WholeGenome.RP-1303.bam 56500497106 BAM aligned CPTAC3 b27086db-1d87-4bc6-9802-e56825109692 23e7f7378ee40d8434ef143ae6c5b715 { 'aliquot_tag': 'ALQ_6753ec33', 'gdc_sample_type': 'Primary Tumor' } @@ -29045,11 +31128,11 @@ C3N-02069.MethArray.Green.T C3N-02069 PDA Methylation Array tumor CPT0146130010 C3N-02069.MethArray.Red.T C3N-02069 PDA Methylation Array tumor CPT0146130010 203219670118_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 b5e7284d-f3db-4971-a6b2-2eef76ca8ff8 9c1bbdea590c2a70ecd6022f35104ab2 { 'aliquot_tag': 'ALQ_7dc1e87a', 'gdc_sample_type': 'Primary Tumor' } C3N-02069.miRNA-Seq.T C3N-02069 PDA miRNA-Seq tumor CPT0146130007 181108_UNC31-K00269_0162_AH255GBBXY_CATGGC_S10_L001_R1_001.unaln.bam 296336053 BAM unaligned CPTAC3 9f4d5c3f-d5c3-4fd1-a450-1168fd87a70a 27414af3d5c991efeaeea7d16336e085 { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor' } C3N-02069.miRNA-Seq.T.hg38 C3N-02069 PDA miRNA-Seq tumor CPT0146130007 7bfbb1fd-7e13-4907-93df-0211fe3afe4e_mirnaseq_gdc_realn.bam 322942729 BAM harmonized CPTAC3 fae904e6-8eed-439f-a142-c15b6eb478f8 0c35003e2146284b35e2a8efcb2742b3 { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor' } -C3N-02069.RNA-Seq.chimeric.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 87ebcc6c-e46a-44f8-be89-e3362f4308c3.rna_seq.chimeric.gdc_realn.bam 130610294 BAM chimeric harmonized CPTAC3 edf7def3-5179-4978-86e4-17ec5a53616a 9fdeda7fb7a8e92b40eafa853a0ed312 { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor' } -C3N-02069.RNA-Seq.genomic.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 87ebcc6c-e46a-44f8-be89-e3362f4308c3.rna_seq.genomic.gdc_realn.bam 10026317862 BAM genomic harmonized CPTAC3 a6fca693-451f-4b71-9997-f1e35cdc6d13 aba6585131ec3bf71e9ad88c4a6003b3 { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor' } -C3N-02069.RNA-Seq.R1_L006.T C3N-02069 PDA RNA-Seq tumor CPT0146130007 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L006_R1_001.fastq.gz 4475908435 FASTQ R1_L006 unaligned CPTAC3 a2b0c3e8-eb52-44b4-ae01-f1ca77ec00cd f85f5b522b10e5655422a9d55fda8603 { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor' } -C3N-02069.RNA-Seq.R2_L006.T C3N-02069 PDA RNA-Seq tumor CPT0146130007 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L006_R2_001.fastq.gz 4983526900 FASTQ R2_L006 unaligned CPTAC3 f502ecbb-c10e-40d0-b944-d5453bf7e1b1 96ccff3f63d32720c3576269e62161a3 { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor' } -C3N-02069.RNA-Seq.transcriptome.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 87ebcc6c-e46a-44f8-be89-e3362f4308c3.rna_seq.transcriptome.gdc_realn.bam 11776301496 BAM transcriptome harmonized CPTAC3 bc34a433-9522-4dc7-a125-87cf4de01641 2d8496a28077d8cf72394a02bf58da9b { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor' } +C3N-02069.RNA-Seq.chimeric.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 871b2ee6-6c30-4864-89b1-1f8b1b45743d.rna_seq.chimeric.gdc_realn.bam 130572828 BAM chimeric harmonized CPTAC3 d05080e7-c8f9-4d89-8c84-375779d74fe6 00bc33b03b57ff48b3aa7b09093e71ae { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor' } +C3N-02069.RNA-Seq.genomic.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 871b2ee6-6c30-4864-89b1-1f8b1b45743d.rna_seq.genomic.gdc_realn.bam 10026920928 BAM genomic harmonized CPTAC3 383ea4ad-aa00-4e13-bc8b-c88cdba29942 7f6c728c76eae9f644639e00dfbc0c4d { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor' } +C3N-02069.RNA-Seq.R1_L006.T C3N-02069 PDA RNA-Seq tumor CPT0146130007 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L006_R1_001.fastq.gz 4475908435 FASTQ R1_L006 unaligned CPTAC3 a2b0c3e8-eb52-44b4-ae01-f1ca77ec00cd f85f5b522b10e5655422a9d55fda8603 { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02069.RNA-Seq.R2_L006.T C3N-02069 PDA RNA-Seq tumor CPT0146130007 180516_UNC31-K00269_0129_AHTWLFBBXX_TAGCTT_S2_L006_R2_001.fastq.gz 4983526900 FASTQ R2_L006 unaligned CPTAC3 f502ecbb-c10e-40d0-b944-d5453bf7e1b1 96ccff3f63d32720c3576269e62161a3 { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02069.RNA-Seq.transcriptome.T.hg38 C3N-02069 PDA RNA-Seq tumor CPT0146130007 871b2ee6-6c30-4864-89b1-1f8b1b45743d.rna_seq.transcriptome.gdc_realn.bam 13309904214 BAM transcriptome harmonized CPTAC3 b791f00e-dffc-48c8-86fa-d546993dca10 f21c3deb7a26e73d015dba97e5418ede { 'aliquot_tag': 'ALQ_fabe4c98', 'gdc_sample_type': 'Primary Tumor' } C3N-02069.WGS.N C3N-02069 PDA WGS blood_normal CPT0146150002 CPT0146150002.WholeGenome.RP-1303.bam 66487699939 BAM aligned CPTAC3 47d581f3-4bd7-4dc7-aadb-4ae095c8e5c5 afae6a98fb1c6552f46908b4574ba9b5 { 'aliquot_tag': 'ALQ_5944db7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02069.WGS.N.hg38 C3N-02069 PDA WGS blood_normal CPT0146150002 a3341e64-192b-4ef2-b376-567aa5862025_wgs_gdc_realn.bam 97193991291 BAM harmonized CPTAC3 9c27493b-fef7-4c07-9a95-0fc68d75604c b301979f86035e083aa3cc3130b7d4d7 { 'aliquot_tag': 'ALQ_5944db7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02069.WGS.T C3N-02069 PDA WGS tumor CPT0146130010_1 CPT0146130010_1.WholeGenome.RP-1303.bam 121225310601 BAM aligned CPTAC3 57f50f88-4241-4217-8b15-4c6ad3038fd0 c71ad262118515f7f24abc2f5f41094d { 'aliquot_tag': 'ALQ_5625d5a9', 'gdc_sample_type': 'Primary Tumor' } @@ -29070,16 +31153,16 @@ C3N-02070.miRNA-Seq.A C3N-02070 CCRCC miRNA-Seq tissue_normal CPT0109910009 1901 C3N-02070.miRNA-Seq.A.hg38 C3N-02070 CCRCC miRNA-Seq tissue_normal CPT0109910009 5392ec85-37e4-48ab-b059-a221d1b01d13_mirnaseq_gdc_realn.bam 221284144 BAM harmonized CPTAC3 55c858e1-be93-4660-9635-c73e13ca0de7 4668d7e3efae3b979da94241580b0e46 { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02070.miRNA-Seq.T C3N-02070 CCRCC miRNA-Seq tumor CPT0109890010 190108_UNC31-K00269_0176_AHYGLVBBXX_GATCAG_S9_L004_R1_001.unaln.bam 201795964 BAM unaligned CPTAC3 ae99b986-0e1e-4104-8b39-6613a10aa123 70e53b145259484caa0cd2be678cd949 { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor' } C3N-02070.miRNA-Seq.T.hg38 C3N-02070 CCRCC miRNA-Seq tumor CPT0109890010 a3cb9f78-d40e-44ef-b40f-e6ab7beae54d_mirnaseq_gdc_realn.bam 222619495 BAM harmonized CPTAC3 55889853-aafe-4e99-8f31-25d9ccc9e89a 5dd9a2b8cedfd45642af7d681092b5a5 { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02070.RNA-Seq.chimeric.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 f3bb4f07-6cea-48cd-82d3-3667f855cdbf.rna_seq.chimeric.gdc_realn.bam 193044221 BAM chimeric harmonized CPTAC3 56555c72-e5fd-4d85-a952-a51d1ebf9b81 f5e6e8c9d2a15d01ca27d6ab2f291b0c { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02070.RNA-Seq.chimeric.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 58c9c456-cc05-4ef9-8d48-95a8b9043bd1.rna_seq.chimeric.gdc_realn.bam 179793103 BAM chimeric harmonized CPTAC3 9bf8bd4e-1b76-462b-8b84-191d50bf318c b05497ee6d8488f4912c96a55fab6c7a { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02070.RNA-Seq.genomic.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 f3bb4f07-6cea-48cd-82d3-3667f855cdbf.rna_seq.genomic.gdc_realn.bam 8957287752 BAM genomic harmonized CPTAC3 606afa86-0d87-4124-9891-482fb7234004 583d42fd2816f81c697b1e5a6590f6a5 { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02070.RNA-Seq.genomic.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 58c9c456-cc05-4ef9-8d48-95a8b9043bd1.rna_seq.genomic.gdc_realn.bam 7634743002 BAM genomic harmonized CPTAC3 a7e5c3d8-ed03-4893-92c7-c2e6beca8fde e8fead9b480a16531b87083a8c4ddbf5 { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02070.RNA-Seq.R1_L001.T C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3429739960 FASTQ R1_L001 unaligned CPTAC3 ba480a0e-f178-499d-b6c4-bb416664dedf 4a76a576fb52f4e1cb176a02782731bd { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02070.RNA-Seq.R1_L003.A C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 190117_UNC31-K00269_0180_AH35VKBBXY_CGATGT_S11_L003_R1_001.fastq.gz 3993461279 FASTQ R1_L003 unaligned CPTAC3 c2a45e67-a032-4e26-80ba-ccb8e726bd85 5b83ee14848f72f547ccd20665077054 { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02070.RNA-Seq.R2_L001.T C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L001_R2_001.fastq.gz 3936538065 FASTQ R2_L001 unaligned CPTAC3 cb664dbd-e3ff-480d-9c73-8ae4086789ce e012aaa1e1dbfb0ab848ccb2ec599b39 { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02070.RNA-Seq.R2_L003.A C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 190117_UNC31-K00269_0180_AH35VKBBXY_CGATGT_S11_L003_R2_001.fastq.gz 4284843965 FASTQ R2_L003 unaligned CPTAC3 f225ce40-ab64-4fd0-84b4-a723598426fb c2ec94adb5b587d2f8cbbf6c379bab0c { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02070.RNA-Seq.transcriptome.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 f3bb4f07-6cea-48cd-82d3-3667f855cdbf.rna_seq.transcriptome.gdc_realn.bam 8396438357 BAM transcriptome harmonized CPTAC3 31728527-7884-4c8e-83d2-e72c28a117c3 644f551f6b6cddd5072e8637ecad519a { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02070.RNA-Seq.transcriptome.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 58c9c456-cc05-4ef9-8d48-95a8b9043bd1.rna_seq.transcriptome.gdc_realn.bam 8177285360 BAM transcriptome harmonized CPTAC3 67024fa3-f575-42a5-9886-53edc369a438 690c62da3291f589d5fd5fd76a2fac98 { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02070.RNA-Seq.chimeric.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 fb7795fd-b5a9-4870-ba5d-0cbaf319e04d.rna_seq.chimeric.gdc_realn.bam 193006535 BAM chimeric harmonized CPTAC3 4c01da73-d726-449b-bcad-f555d0a4ab21 eafd39882fd9ad36e3dd1c7a207a80a4 { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02070.RNA-Seq.chimeric.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 e010f643-293a-4d93-83ae-f8c61141fd06.rna_seq.chimeric.gdc_realn.bam 179757564 BAM chimeric harmonized CPTAC3 1c88da81-84df-4671-ba0b-e442149ca34f d4edc315bf584fa94bb1b3cdfbf7939e { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02070.RNA-Seq.genomic.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 fb7795fd-b5a9-4870-ba5d-0cbaf319e04d.rna_seq.genomic.gdc_realn.bam 8958277545 BAM genomic harmonized CPTAC3 6f282acc-e3ea-4831-ac36-ae7534799b96 6493ed69874eb4faa3242b99cd768314 { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02070.RNA-Seq.genomic.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 e010f643-293a-4d93-83ae-f8c61141fd06.rna_seq.genomic.gdc_realn.bam 7635931069 BAM genomic harmonized CPTAC3 0b886fed-16d8-49b7-a2d6-9e9481b184e4 6d570e4d769cd6bc87e2fffd4a3a0a6b { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02070.RNA-Seq.R1_L001.T C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3429739960 FASTQ R1_L001 unaligned CPTAC3 ba480a0e-f178-499d-b6c4-bb416664dedf 4a76a576fb52f4e1cb176a02782731bd { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02070.RNA-Seq.R1_L003.A C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 190117_UNC31-K00269_0180_AH35VKBBXY_CGATGT_S11_L003_R1_001.fastq.gz 3993461279 FASTQ R1_L003 unaligned CPTAC3 c2a45e67-a032-4e26-80ba-ccb8e726bd85 5b83ee14848f72f547ccd20665077054 { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02070.RNA-Seq.R2_L001.T C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 190117_UNC31-K00269_0180_AH35VKBBXY_GATCAG_S3_L001_R2_001.fastq.gz 3936538065 FASTQ R2_L001 unaligned CPTAC3 cb664dbd-e3ff-480d-9c73-8ae4086789ce e012aaa1e1dbfb0ab848ccb2ec599b39 { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02070.RNA-Seq.R2_L003.A C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 190117_UNC31-K00269_0180_AH35VKBBXY_CGATGT_S11_L003_R2_001.fastq.gz 4284843965 FASTQ R2_L003 unaligned CPTAC3 f225ce40-ab64-4fd0-84b4-a723598426fb c2ec94adb5b587d2f8cbbf6c379bab0c { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02070.RNA-Seq.transcriptome.A.hg38 C3N-02070 CCRCC RNA-Seq tissue_normal CPT0109910009 fb7795fd-b5a9-4870-ba5d-0cbaf319e04d.rna_seq.transcriptome.gdc_realn.bam 9590772808 BAM transcriptome harmonized CPTAC3 2a4f57af-cf90-4907-87e6-f27cb2317170 ab3833140c0e040a899e8133f9072170 { 'aliquot_tag': 'ALQ_f997ce81', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02070.RNA-Seq.transcriptome.T.hg38 C3N-02070 CCRCC RNA-Seq tumor CPT0109890010 e010f643-293a-4d93-83ae-f8c61141fd06.rna_seq.transcriptome.gdc_realn.bam 9331404926 BAM transcriptome harmonized CPTAC3 87fe8ab9-14ad-4161-a956-0a598de18f16 238f350f0deddc8ce695eada815672cf { 'aliquot_tag': 'ALQ_627cdf00', 'gdc_sample_type': 'Primary Tumor' } C3N-02070.WGS.A C3N-02070 CCRCC WGS tissue_normal CPT0109910006 CPT0109910006.WholeGenome.RP-1303.bam 67858578812 BAM aligned CPTAC3 db0348c9-48c6-4abe-9f76-11d5e2e01d4a 9445362e54d43164cc35230ae497d3a3 { 'aliquot_tag': 'ALQ_6928d310', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02070.WGS.A.hg38 C3N-02070 CCRCC WGS tissue_normal CPT0109910006 dc2ed23b-fb44-4015-9e67-8d77da23efbf_wgs_gdc_realn.bam 100395086788 BAM harmonized CPTAC3 4e67166c-6242-4142-82c9-ef16af4f9e23 865aa5edcaae8cb812e79497b0fb9eb6 { 'aliquot_tag': 'ALQ_6928d310', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02070.WGS.N C3N-02070 CCRCC WGS blood_normal CPT0146220002 CPT0146220002.WholeGenome.RP-1303.bam 58917489490 BAM aligned CPTAC3 1e786228-e432-4198-b49e-67b926343d0c c00b54d0cd031adef049338deab9c791 { 'aliquot_tag': 'ALQ_3120e309', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29100,16 +31183,16 @@ C3N-02082.miRNA-Seq.A C3N-02082 CCRCC miRNA-Seq tissue_normal CPT0109940009 1901 C3N-02082.miRNA-Seq.A.hg38 C3N-02082 CCRCC miRNA-Seq tissue_normal CPT0109940009 cad16176-512d-4ff2-ac70-2068519e7623_mirnaseq_gdc_realn.bam 287218308 BAM harmonized CPTAC3 0451e369-a8a6-4cbb-a5b5-22e163a57dc1 571a4352bc562cd03eedbb6bb534b0ef { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02082.miRNA-Seq.T C3N-02082 CCRCC miRNA-Seq tumor CPT0109920010 190108_UNC31-K00269_0176_AHYGLVBBXX_TAGCTT_S10_L004_R1_001.unaln.bam 220316365 BAM unaligned CPTAC3 d4b3bba8-a429-4c6b-851b-1d775f94d0f3 319fdd1c7d53558af585d6aa5b144daa { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor' } C3N-02082.miRNA-Seq.T.hg38 C3N-02082 CCRCC miRNA-Seq tumor CPT0109920010 533b0c00-69e3-44ad-8068-c74bff080b21_mirnaseq_gdc_realn.bam 244682352 BAM harmonized CPTAC3 1caa50c8-3a27-4619-b4b5-9ccf69c0c6a1 37bc809b8b56e8ae9f75d6873e372881 { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02082.RNA-Seq.chimeric.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 a8fa0e51-d3c9-4ee9-a318-61c3b2b367a4.rna_seq.chimeric.gdc_realn.bam 185463064 BAM chimeric harmonized CPTAC3 920de9c1-43cd-462e-814d-2185610c5cf7 22420668640ea5e7865c4947999087b0 { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02082.RNA-Seq.chimeric.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 bb6ae21c-1e31-4f38-b0ad-fb61b91efd83.rna_seq.chimeric.gdc_realn.bam 199068303 BAM chimeric harmonized CPTAC3 c33c01f3-650a-4342-b178-86c9b87e616f a9827a47263dcc3a4523b441383e799d { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02082.RNA-Seq.genomic.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 a8fa0e51-d3c9-4ee9-a318-61c3b2b367a4.rna_seq.genomic.gdc_realn.bam 10436383954 BAM genomic harmonized CPTAC3 6231b5a5-25be-425f-9dc3-fb39c641a11c 26dd362afd54bc78b49d340c4ecb3f0f { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02082.RNA-Seq.genomic.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 bb6ae21c-1e31-4f38-b0ad-fb61b91efd83.rna_seq.genomic.gdc_realn.bam 8542200813 BAM genomic harmonized CPTAC3 4b95966d-c8d2-4c13-b442-38105c075ba3 fb2c9e4a038e889e481a27d453515b14 { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02082.RNA-Seq.R1_L001.T C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3654677904 FASTQ R1_L001 unaligned CPTAC3 705ed781-5a2a-4c96-b505-b240ea717e62 c03b81a40ecaeb4ab3d4d8d8b86f7b49 { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02082.RNA-Seq.R1_L005.A C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L005_R1_001.fastq.gz 4855832251 FASTQ R1_L005 unaligned CPTAC3 be698259-9bae-4d74-b999-c429333679a3 91c19e93af5ee11340d58a011009cf20 { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02082.RNA-Seq.R2_L001.T C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4154102334 FASTQ R2_L001 unaligned CPTAC3 ef3f6457-1a5d-4b4d-b0dd-56224d5812e7 1a9344d6aacbe6eb2f814d1e6b7c948b { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02082.RNA-Seq.R2_L005.A C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L005_R2_001.fastq.gz 5461139177 FASTQ R2_L005 unaligned CPTAC3 7ce94448-d41c-44eb-bc85-e5539ce59d24 7e23ed39c3fd17a1b8c19c160b1a9d90 { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02082.RNA-Seq.transcriptome.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 a8fa0e51-d3c9-4ee9-a318-61c3b2b367a4.rna_seq.transcriptome.gdc_realn.bam 10949266199 BAM transcriptome harmonized CPTAC3 f9504fff-1587-4d26-909a-d64d9135a31e d188ca5333c1f7a20388938c1fb34183 { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02082.RNA-Seq.transcriptome.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 bb6ae21c-1e31-4f38-b0ad-fb61b91efd83.rna_seq.transcriptome.gdc_realn.bam 8969114954 BAM transcriptome harmonized CPTAC3 aee864b5-7f34-4484-9e7c-da876b5d184e fa3a42e7a9b2ac375aea7680b7722453 { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02082.RNA-Seq.chimeric.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 e4e4e96b-df61-4bef-aa06-65ab65c3c2fd.rna_seq.chimeric.gdc_realn.bam 185433322 BAM chimeric harmonized CPTAC3 9e370460-c250-4d11-ae8c-59850153a5c1 5f45bba4f1ddbc8f214e0e7a70f5cd12 { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02082.RNA-Seq.chimeric.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 d3d59dca-6939-43e0-8254-37aa8d9d7421.rna_seq.chimeric.gdc_realn.bam 199037957 BAM chimeric harmonized CPTAC3 a1e9954e-be6b-4b86-bbd2-2d08c9bd2130 4c17a260b7dd337a8af0a3bf8fd9e278 { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02082.RNA-Seq.genomic.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 e4e4e96b-df61-4bef-aa06-65ab65c3c2fd.rna_seq.genomic.gdc_realn.bam 10438661761 BAM genomic harmonized CPTAC3 1ea99483-1fdb-4fbc-b692-a314162505c9 ffff6c4a55a8d59792a97fb40b9cd6bf { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02082.RNA-Seq.genomic.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 d3d59dca-6939-43e0-8254-37aa8d9d7421.rna_seq.genomic.gdc_realn.bam 8543050840 BAM genomic harmonized CPTAC3 01026c57-206d-49c7-9864-b5b588a09ca2 c8c01f606185187f936c0e1575efe1b3 { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02082.RNA-Seq.R1_L001.T C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 3654677904 FASTQ R1_L001 unaligned CPTAC3 705ed781-5a2a-4c96-b505-b240ea717e62 c03b81a40ecaeb4ab3d4d8d8b86f7b49 { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02082.RNA-Seq.R1_L005.A C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L005_R1_001.fastq.gz 4855832251 FASTQ R1_L005 unaligned CPTAC3 be698259-9bae-4d74-b999-c429333679a3 91c19e93af5ee11340d58a011009cf20 { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02082.RNA-Seq.R2_L001.T C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4154102334 FASTQ R2_L001 unaligned CPTAC3 ef3f6457-1a5d-4b4d-b0dd-56224d5812e7 1a9344d6aacbe6eb2f814d1e6b7c948b { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02082.RNA-Seq.R2_L005.A C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 190117_UNC31-K00269_0180_AH35VKBBXY_TAGCTT_S2_L005_R2_001.fastq.gz 5461139177 FASTQ R2_L005 unaligned CPTAC3 7ce94448-d41c-44eb-bc85-e5539ce59d24 7e23ed39c3fd17a1b8c19c160b1a9d90 { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02082.RNA-Seq.transcriptome.A.hg38 C3N-02082 CCRCC RNA-Seq tissue_normal CPT0109940009 e4e4e96b-df61-4bef-aa06-65ab65c3c2fd.rna_seq.transcriptome.gdc_realn.bam 12532876205 BAM transcriptome harmonized CPTAC3 329921d6-3546-4174-b66f-4ace57fdb206 7cc47dcc3aa170124d00e40acbc032eb { 'aliquot_tag': 'ALQ_317741f1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02082.RNA-Seq.transcriptome.T.hg38 C3N-02082 CCRCC RNA-Seq tumor CPT0109920010 d3d59dca-6939-43e0-8254-37aa8d9d7421.rna_seq.transcriptome.gdc_realn.bam 10225432167 BAM transcriptome harmonized CPTAC3 49506eb3-9885-459b-b854-50a8d968a169 d35cf47b4bfb0d8893d75155da830c61 { 'aliquot_tag': 'ALQ_def03db4', 'gdc_sample_type': 'Primary Tumor' } C3N-02082.WGS.A C3N-02082 CCRCC WGS tissue_normal CPT0109940006 CPT0109940006.WholeGenome.RP-1303.bam 62883739252 BAM aligned CPTAC3 6e70a4c8-3d4e-4ccc-819a-389d8df4f56b 6021e36db1300387547d5dd989e14872 { 'aliquot_tag': 'ALQ_a1c85c60', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02082.WGS.A.hg38 C3N-02082 CCRCC WGS tissue_normal CPT0109940006 8e48b378-88aa-48f5-a10f-06b77a827e48_wgs_gdc_realn.bam 91508757986 BAM harmonized CPTAC3 7c799536-8976-4302-94a2-211916be4dfd 71ca343e3d6699428239bae5ec7fe811 { 'aliquot_tag': 'ALQ_a1c85c60', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02082.WGS.N C3N-02082 CCRCC WGS blood_normal CPT0146260002 CPT0146260002.WholeGenome.RP-1303.bam 55733994847 BAM aligned CPTAC3 7843627f-a7c6-4e4e-927a-6ca4838e471b 87b7e2aebe54baf5b226b0bd52c22602 { 'aliquot_tag': 'ALQ_c4a045c9', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29128,16 +31211,16 @@ C3N-02084.miRNA-Seq.A C3N-02084 CCRCC miRNA-Seq tissue_normal CPT0109970006 1901 C3N-02084.miRNA-Seq.A.hg38 C3N-02084 CCRCC miRNA-Seq tissue_normal CPT0109970006 b635b134-e4be-47ce-be31-526a62b45814_mirnaseq_gdc_realn.bam 239623594 BAM harmonized CPTAC3 f83ce38b-2fc2-44cd-9c20-67eef12a3173 b9cbe6eb9691552b66b969b1825b9219 { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02084.miRNA-Seq.T C3N-02084 CCRCC miRNA-Seq tumor CPT0109950010 190108_UNC31-K00269_0176_AHYGLVBBXX_CTCAGA_S40_L003_R1_001.unaln.bam 243840113 BAM unaligned CPTAC3 a08fa66d-18aa-4073-a047-7e6fe1406eb0 7324f981a2eca7ad8593b289868521d8 { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor' } C3N-02084.miRNA-Seq.T.hg38 C3N-02084 CCRCC miRNA-Seq tumor CPT0109950010 ce1f0948-69b9-450f-9038-5ecacd11511f_mirnaseq_gdc_realn.bam 270956514 BAM harmonized CPTAC3 76729f91-930e-4139-9d0e-09aa0a2b6206 ef4649361ce3f385ae9116fcc277c63c { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02084.RNA-Seq.chimeric.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 d091bc01-25cb-4f8d-bc80-06689f08f715.rna_seq.chimeric.gdc_realn.bam 92743000 BAM chimeric harmonized CPTAC3 68e87cdc-3862-45ba-8efe-1a84dead080e ce53ef7250da2ab469c479fc727128e9 { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02084.RNA-Seq.chimeric.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 22236426-0700-4d66-a263-ec75bd0fef63.rna_seq.chimeric.gdc_realn.bam 37914592 BAM chimeric harmonized CPTAC3 3aa2200e-f030-4006-9235-6e4006e1570b 6b769e75caa27ff54e7643b7e14651ac { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02084.RNA-Seq.genomic.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 d091bc01-25cb-4f8d-bc80-06689f08f715.rna_seq.genomic.gdc_realn.bam 7915565050 BAM genomic harmonized CPTAC3 d74f522f-f578-4e0b-a22d-e1e1d6b5c3d0 e35088f6f8b613727bf87f3536e4dd44 { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02084.RNA-Seq.genomic.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 22236426-0700-4d66-a263-ec75bd0fef63.rna_seq.genomic.gdc_realn.bam 9645253579 BAM genomic harmonized CPTAC3 43e5027f-7620-48e3-a1b6-2e0fe82929a1 8978596cf31b16b811a2dc829f37eca8 { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02084.RNA-Seq.R1_L001.T C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L001_R1_001.fastq.gz 4604187532 FASTQ R1_L001 unaligned CPTAC3 dd540f67-bb54-4f83-81e4-643bab062cc6 d55e62b42f0ac95895f6d1c07425c974 { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02084.RNA-Seq.R1_L005.A C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L005_R1_001.fastq.gz 3569917919 FASTQ R1_L005 unaligned CPTAC3 16b913d0-3f43-4f74-b229-f9ad8a1baf73 206b6549d2bcacfeaab8f578f03043d0 { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02084.RNA-Seq.R2_L001.T C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L001_R2_001.fastq.gz 4697965186 FASTQ R2_L001 unaligned CPTAC3 82d40117-4569-49fb-9a79-c6479446355e c481cf01ab876e011d8b26dd136e8670 { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02084.RNA-Seq.R2_L005.A C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L005_R2_001.fastq.gz 4061013317 FASTQ R2_L005 unaligned CPTAC3 8b3f0a4f-6e07-4f26-80fa-6fe6714a4f05 9da9703a1e1c4b73ccbae1bb24e45190 { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02084.RNA-Seq.transcriptome.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 d091bc01-25cb-4f8d-bc80-06689f08f715.rna_seq.transcriptome.gdc_realn.bam 8010512124 BAM transcriptome harmonized CPTAC3 ba1b0b04-ef90-4d4a-b3aa-4f966ca80b46 8b30762580ad01e77a2bfe3e4c7d47ab { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02084.RNA-Seq.transcriptome.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 22236426-0700-4d66-a263-ec75bd0fef63.rna_seq.transcriptome.gdc_realn.bam 10918960654 BAM transcriptome harmonized CPTAC3 b6d0ccc2-d967-4ff8-aedd-a7614741033a ce60b442a59dd34072011583a6b699df { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02084.RNA-Seq.chimeric.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 ab79065a-45fb-4c11-a0b8-d03387bc61cc.rna_seq.chimeric.gdc_realn.bam 92738561 BAM chimeric harmonized CPTAC3 ca324daf-fb75-4bad-913c-428eb1363888 0d790121375ed3cd4ec53102a8b96059 { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02084.RNA-Seq.chimeric.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 716a2258-2458-4639-912e-2162a924f6ed.rna_seq.chimeric.gdc_realn.bam 37900263 BAM chimeric harmonized CPTAC3 daeee1eb-90a4-485f-9859-cf35a44d35d0 18c8af0006b87480361063e8f8dd231f { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02084.RNA-Seq.genomic.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 ab79065a-45fb-4c11-a0b8-d03387bc61cc.rna_seq.genomic.gdc_realn.bam 7916728025 BAM genomic harmonized CPTAC3 b78e38a8-f31e-4eed-bf15-91821626655a 692460c42d0ce50087e4fba891fbf010 { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02084.RNA-Seq.genomic.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 716a2258-2458-4639-912e-2162a924f6ed.rna_seq.genomic.gdc_realn.bam 9646168734 BAM genomic harmonized CPTAC3 3472bff9-62ab-4962-95ee-49bab2befc9e f878feb6ef8f4e03bbe3ee5118ee4838 { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02084.RNA-Seq.R1_L001.T C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L001_R1_001.fastq.gz 4604187532 FASTQ R1_L001 unaligned CPTAC3 dd540f67-bb54-4f83-81e4-643bab062cc6 d55e62b42f0ac95895f6d1c07425c974 { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02084.RNA-Seq.R1_L005.A C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L005_R1_001.fastq.gz 3569917919 FASTQ R1_L005 unaligned CPTAC3 16b913d0-3f43-4f74-b229-f9ad8a1baf73 206b6549d2bcacfeaab8f578f03043d0 { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02084.RNA-Seq.R2_L001.T C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 181207_UNC32-K00270_0137_BH2LYCBBXY_CCGTCC_S4_L001_R2_001.fastq.gz 4697965186 FASTQ R2_L001 unaligned CPTAC3 82d40117-4569-49fb-9a79-c6479446355e c481cf01ab876e011d8b26dd136e8670 { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02084.RNA-Seq.R2_L005.A C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 190117_UNC31-K00269_0180_AH35VKBBXY_GGCTAC_S1_L005_R2_001.fastq.gz 4061013317 FASTQ R2_L005 unaligned CPTAC3 8b3f0a4f-6e07-4f26-80fa-6fe6714a4f05 9da9703a1e1c4b73ccbae1bb24e45190 { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02084.RNA-Seq.transcriptome.A.hg38 C3N-02084 CCRCC RNA-Seq tissue_normal CPT0109970006 ab79065a-45fb-4c11-a0b8-d03387bc61cc.rna_seq.transcriptome.gdc_realn.bam 9183138847 BAM transcriptome harmonized CPTAC3 8e37e383-2bca-4418-94cf-b9a1962ed934 496a9ec50f9fe2d5cceabda218895e25 { 'aliquot_tag': 'ALQ_e66826b0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02084.RNA-Seq.transcriptome.T.hg38 C3N-02084 CCRCC RNA-Seq tumor CPT0109950010 716a2258-2458-4639-912e-2162a924f6ed.rna_seq.transcriptome.gdc_realn.bam 12390321067 BAM transcriptome harmonized CPTAC3 3143f3a0-7564-4d01-9c75-a1fa02e6d0fa 8d5a3f4508965b1dae5e3f0c9d6d5931 { 'aliquot_tag': 'ALQ_6cd0e1a4', 'gdc_sample_type': 'Primary Tumor' } C3N-02084.WGS.N C3N-02084 CCRCC WGS blood_normal CPT0146300002 CPT0146300002.WholeGenome.RP-1303.bam 63788369068 BAM aligned CPTAC3 6fe98032-2d04-47f6-aac7-de76c09dcbb3 c2bc3697ac5b92a4184c5dc43d7eb622 { 'aliquot_tag': 'ALQ_80bc63cc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02084.WGS.N.hg38 C3N-02084 CCRCC WGS blood_normal CPT0146300002 0052b10f-fcc4-4d9b-b6c0-4af66673b043_wgs_gdc_realn.bam 93407439962 BAM harmonized CPTAC3 87142a1c-0651-46f8-8292-823e39f28bf9 1c78d41595dbe2794fa01d717a33b8ab { 'aliquot_tag': 'ALQ_80bc63cc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02084.WGS.T C3N-02084 CCRCC WGS tumor CPT0109950007 CPT0109950007.WholeGenome.RP-1303.bam 61247226513 BAM aligned CPTAC3 3b509c21-da48-44b4-98cb-2453f4bbc8fa 1f9583d6b99a81e6acba3efb9a921b5f { 'aliquot_tag': 'ALQ_ebaf4546', 'gdc_sample_type': 'Primary Tumor' } @@ -29150,11 +31233,11 @@ C3N-02085.MethArray.Green.T C3N-02085 CCRCC Methylation Array tumor CPT010998000 C3N-02085.MethArray.Red.T C3N-02085 CCRCC Methylation Array tumor CPT0109980007 203219650065_R02C01_Red.idat 13676226 IDAT Red NA CPTAC3 7ca56c05-7821-4b39-a7e9-6c5b448cd5fe 8e8b3b654b50b395c9f9d746791386a6 { 'aliquot_tag': 'ALQ_133f81f7', 'gdc_sample_type': 'Primary Tumor' } C3N-02085.miRNA-Seq.T C3N-02085 CCRCC miRNA-Seq tumor CPT0109980010 190108_UNC31-K00269_0176_AHYGLVBBXX_ACAGTG_S5_L004_R1_001.unaln.bam 203619636 BAM unaligned CPTAC3 e92b27ea-d0a1-401a-a201-5957266d0c8e b1b40514b5a3bad36fe8c7ef898221c0 { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor' } C3N-02085.miRNA-Seq.T.hg38 C3N-02085 CCRCC miRNA-Seq tumor CPT0109980010 298c2a3a-5721-4bf8-9ae7-2d2304c4202d_mirnaseq_gdc_realn.bam 224693915 BAM harmonized CPTAC3 c7b9c7ab-7e72-4479-b3aa-16b019181a3e 311dbff37acb96d9ac63111623427bbb { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor' } -C3N-02085.RNA-Seq.chimeric.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 250b3e94-4eb1-47f0-b21a-c7d8d0bf4367.rna_seq.chimeric.gdc_realn.bam 86685539 BAM chimeric harmonized CPTAC3 17635520-0b0d-42ad-8be3-4d09a7f2e512 8933772f3323c84308fed8362f121a3a { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor' } -C3N-02085.RNA-Seq.genomic.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 250b3e94-4eb1-47f0-b21a-c7d8d0bf4367.rna_seq.genomic.gdc_realn.bam 7777744203 BAM genomic harmonized CPTAC3 867e301f-ea37-494d-9ccf-ffbba78c3191 9336738314f21aabd7b73223409416ce { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor' } -C3N-02085.RNA-Seq.R1_L002.T C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 3585236660 FASTQ R1_L002 unaligned CPTAC3 e4c95dc0-61f0-48fd-b9ed-5933a0abe579 174246f310cf059b9c73846aa4181c59 { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor' } -C3N-02085.RNA-Seq.R2_L002.T C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 4032516129 FASTQ R2_L002 unaligned CPTAC3 c7482138-2a11-466d-84bf-bdfa9115286d 0055f70fa1544ad25f457f6f6d20c17f { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor' } -C3N-02085.RNA-Seq.transcriptome.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 250b3e94-4eb1-47f0-b21a-c7d8d0bf4367.rna_seq.transcriptome.gdc_realn.bam 8062815262 BAM transcriptome harmonized CPTAC3 4dd3a47e-064a-444d-8128-dad09c7d82be d4ea117d8432f8706ef2011063de46fc { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor' } +C3N-02085.RNA-Seq.chimeric.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 b38ff6d6-f797-416f-85e2-7185299cd005.rna_seq.chimeric.gdc_realn.bam 86671093 BAM chimeric harmonized CPTAC3 8d0d1c06-bdf6-4782-ab55-d24033f413b5 c3985d51a6536b585648b5655b410c07 { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor' } +C3N-02085.RNA-Seq.genomic.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 b38ff6d6-f797-416f-85e2-7185299cd005.rna_seq.genomic.gdc_realn.bam 7778517202 BAM genomic harmonized CPTAC3 58f3d230-4ebd-4d62-b8e4-9da15f438f20 d9eff04190989b7b6c280af4a8084910 { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor' } +C3N-02085.RNA-Seq.R1_L002.T C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L002_R1_001.fastq.gz 3585236660 FASTQ R1_L002 unaligned CPTAC3 e4c95dc0-61f0-48fd-b9ed-5933a0abe579 174246f310cf059b9c73846aa4181c59 { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02085.RNA-Seq.R2_L002.T C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 190117_UNC31-K00269_0180_AH35VKBBXY_ACAGTG_S5_L002_R2_001.fastq.gz 4032516129 FASTQ R2_L002 unaligned CPTAC3 c7482138-2a11-466d-84bf-bdfa9115286d 0055f70fa1544ad25f457f6f6d20c17f { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02085.RNA-Seq.transcriptome.T.hg38 C3N-02085 CCRCC RNA-Seq tumor CPT0109980010 b38ff6d6-f797-416f-85e2-7185299cd005.rna_seq.transcriptome.gdc_realn.bam 9175876786 BAM transcriptome harmonized CPTAC3 7ccb1742-cf72-4094-b0a4-95cb7c2b4bf1 dbeb4b28baf439e11c110b81b707ebf8 { 'aliquot_tag': 'ALQ_94402515', 'gdc_sample_type': 'Primary Tumor' } C3N-02085.WGS.N C3N-02085 CCRCC WGS blood_normal CPT0146340002 CPT0146340002.WholeGenome.RP-1303.bam 59224158033 BAM aligned CPTAC3 b50ffe6c-9b6d-455c-9c24-e183185e0821 8dc582f49d87f476c81506766515ad03 { 'aliquot_tag': 'ALQ_753cc50c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02085.WGS.N.hg38 C3N-02085 CCRCC WGS blood_normal CPT0146340002 1daa8e7e-a212-4407-9687-f589a8ad6680_wgs_gdc_realn.bam 85660629219 BAM harmonized CPTAC3 f3df1eb7-e0d3-4a70-9e29-5c588369c2e0 85bb091d6cf9611f9acbb471e13f2993 { 'aliquot_tag': 'ALQ_753cc50c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02085.WGS.T C3N-02085 CCRCC WGS tumor CPT0109980007 CPT0109980007.WholeGenome.RP-1303.bam 64233555307 BAM aligned CPTAC3 7e474663-cabd-4f08-bbd3-9be4d428d2a3 094f154dd0650e0ab0229891501fa88a { 'aliquot_tag': 'ALQ_133f81f7', 'gdc_sample_type': 'Primary Tumor' } @@ -29173,12 +31256,12 @@ C3N-02087.miRNA-Seq.T C3N-02087 LUAD miRNA-Seq tumor CPT0118200006 181119_UNC31- C3N-02087.miRNA-Seq.T.hg38 C3N-02087 LUAD miRNA-Seq tumor CPT0118200006 00ca017b-9fa8-4509-ac02-91b1c42493b4_mirnaseq_gdc_realn.bam 277392941 BAM harmonized CPTAC3 87a67073-3dda-4a9d-84cb-75073402a6c9 84d5c6bece23e2dd95f1a569ffb57cb4 { 'aliquot_tag': 'ALQ_54520149', 'gdc_sample_type': 'Primary Tumor' } C3N-02087.RNA-Seq.chimeric.A.hg38 C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 baf70b5d-6ab4-4c34-af36-e09b9bd0f372.rna_seq.chimeric.gdc_realn.bam 104474674 BAM chimeric harmonized CPTAC3 3f3c28d4-1667-474c-b8fb-036e34d6e904 3d29975c82db8769e376cd097149b287 { 'aliquot_tag': 'ALQ_a1d2a789', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02087.RNA-Seq.chimeric.T.hg38 C3N-02087 LUAD RNA-Seq tumor CPT0118200006 18f0d923-c97c-4733-9f57-e48669262066.rna_seq.chimeric.gdc_realn.bam 167030805 BAM chimeric harmonized CPTAC3 793b17d2-e834-408f-bc04-1449104fc7c4 347635d12777196026d881700d4781ea { 'aliquot_tag': 'ALQ_54520149', 'gdc_sample_type': 'Primary Tumor' } -C3N-02087.RNA-Seq.genomic.A.hg38 C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 baf70b5d-6ab4-4c34-af36-e09b9bd0f372.rna_seq.genomic.gdc_realn.bam 7995106898 BAM genomic harmonized CPTAC3 9800d3b6-2ac1-4fd8-9c48-9e01c94ba408 ec68df439d61dae5153fe7778dd0e0cd { 'aliquot_tag': 'ALQ_a1d2a789', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02087.RNA-Seq.genomic.T.hg38 C3N-02087 LUAD RNA-Seq tumor CPT0118200006 18f0d923-c97c-4733-9f57-e48669262066.rna_seq.genomic.gdc_realn.bam 8125099617 BAM genomic harmonized CPTAC3 b6ad9df3-02ac-4c76-b6c9-2de3a4f0913e d373bfcb2ddb5a152585da71417d0c72 { 'aliquot_tag': 'ALQ_54520149', 'gdc_sample_type': 'Primary Tumor' } -C3N-02087.RNA-Seq.R1_L001.T C3N-02087 LUAD RNA-Seq tumor CPT0118200006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3532645904 FASTQ R1_L001 unaligned CPTAC3 4956578a-3158-4d54-b3be-15539b03d16c c0e9eec4304d9dc9d635474fbfa68e96 { 'aliquot_tag': 'ALQ_54520149', 'gdc_sample_type': 'Primary Tumor' } -C3N-02087.RNA-Seq.R1_L006.A C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CTTGTA_S19_L006_R1_001.fastq.gz 3943617864 FASTQ R1_L006 unaligned CPTAC3 fd9154ef-e737-457a-abb2-827d213c9208 93daa282849b97a3525d8b46e19d6f33 { 'aliquot_tag': 'ALQ_a1d2a789', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02087.RNA-Seq.R2_L001.T C3N-02087 LUAD RNA-Seq tumor CPT0118200006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4043090524 FASTQ R2_L001 unaligned CPTAC3 ca986769-376f-45ff-8550-722c3f9e77f2 cdded844cc4615af5c85850d769b32ed { 'aliquot_tag': 'ALQ_54520149', 'gdc_sample_type': 'Primary Tumor' } -C3N-02087.RNA-Seq.R2_L006.A C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CTTGTA_S19_L006_R2_001.fastq.gz 4339800816 FASTQ R2_L006 unaligned CPTAC3 e919ad05-b157-48c6-9c35-de6f5836d9f4 c7b32bcae5cf42a73a8ca8dc810c60c1 { 'aliquot_tag': 'ALQ_a1d2a789', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02087.RNA-Seq.genomic.A.hg38 C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 baf70b5d-6ab4-4c34-af36-e09b9bd0f372.rna_seq.genomic.gdc_realn.bam 7995106898 BAM genomic harmonized CPTAC3 fa4b9ce4-63e1-46a8-958b-39b3331dc138 ec68df439d61dae5153fe7778dd0e0cd { 'aliquot_tag': 'ALQ_a1d2a789', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02087.RNA-Seq.genomic.T.hg38 C3N-02087 LUAD RNA-Seq tumor CPT0118200006 18f0d923-c97c-4733-9f57-e48669262066.rna_seq.genomic.gdc_realn.bam 8125099617 BAM genomic harmonized CPTAC3 49a3b003-b9ed-42c4-86f8-07b9902fc036 d373bfcb2ddb5a152585da71417d0c72 { 'aliquot_tag': 'ALQ_54520149', 'gdc_sample_type': 'Primary Tumor' } +C3N-02087.RNA-Seq.R1_L001.T C3N-02087 LUAD RNA-Seq tumor CPT0118200006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L001_R1_001.fastq.gz 3532645904 FASTQ R1_L001 unaligned CPTAC3 4956578a-3158-4d54-b3be-15539b03d16c c0e9eec4304d9dc9d635474fbfa68e96 { 'aliquot_tag': 'ALQ_54520149', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02087.RNA-Seq.R1_L006.A C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CTTGTA_S19_L006_R1_001.fastq.gz 3943617864 FASTQ R1_L006 unaligned CPTAC3 fd9154ef-e737-457a-abb2-827d213c9208 93daa282849b97a3525d8b46e19d6f33 { 'aliquot_tag': 'ALQ_a1d2a789', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02087.RNA-Seq.R2_L001.T C3N-02087 LUAD RNA-Seq tumor CPT0118200006 171109_UNC31-K00269_0091_BHMFGTBBXX_ACAGTG_S3_L001_R2_001.fastq.gz 4043090524 FASTQ R2_L001 unaligned CPTAC3 ca986769-376f-45ff-8550-722c3f9e77f2 cdded844cc4615af5c85850d769b32ed { 'aliquot_tag': 'ALQ_54520149', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02087.RNA-Seq.R2_L006.A C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 180109_UNC31-K00269_0107_AHNHY2BBXX_CTTGTA_S19_L006_R2_001.fastq.gz 4339800816 FASTQ R2_L006 unaligned CPTAC3 e919ad05-b157-48c6-9c35-de6f5836d9f4 c7b32bcae5cf42a73a8ca8dc810c60c1 { 'aliquot_tag': 'ALQ_a1d2a789', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-02087.RNA-Seq.transcriptome.A.hg38 C3N-02087 LUAD RNA-Seq tissue_normal CPT0118240006 baf70b5d-6ab4-4c34-af36-e09b9bd0f372.rna_seq.transcriptome.gdc_realn.bam 10703636021 BAM transcriptome harmonized CPTAC3 d74a86e3-021b-4f35-a09b-4faeaef7c6d0 9d4eede43416adc24eb7ca529677c578 { 'aliquot_tag': 'ALQ_a1d2a789', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02087.RNA-Seq.transcriptome.T.hg38 C3N-02087 LUAD RNA-Seq tumor CPT0118200006 18f0d923-c97c-4733-9f57-e48669262066.rna_seq.transcriptome.gdc_realn.bam 10409152452 BAM transcriptome harmonized CPTAC3 9a5f852e-a886-44cc-a377-260e92e7ba52 8f4647e4ce29b2854c834c3fa9832a47 { 'aliquot_tag': 'ALQ_54520149', 'gdc_sample_type': 'Primary Tumor' } C3N-02087.WGS.A C3N-02087 LUAD WGS tissue_normal CPT0118240009 CPT0118240009.WholeGenome.RP-1303.bam 48545834210 BAM aligned CPTAC3 e7a42f1b-0a98-40c9-ad95-de09ad1a22f0 363646ddd8c0cfa68f374a19b9ea0e3b { 'aliquot_tag': 'ALQ_316dba18', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -29201,16 +31284,16 @@ C3N-02088.miRNA-Seq.A C3N-02088 LUAD miRNA-Seq tissue_normal CPT0118310006 18110 C3N-02088.miRNA-Seq.A.hg38 C3N-02088 LUAD miRNA-Seq tissue_normal CPT0118310006 59aeba00-b6de-42ef-8014-88d21a59b894_mirnaseq_gdc_realn.bam 265176171 BAM harmonized CPTAC3 7be0ed66-146e-478e-8809-ab2f7695ef22 9ea2cc8642bf65d7f0a370f6594da65a { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02088.miRNA-Seq.T C3N-02088 LUAD miRNA-Seq tumor CPT0118290009 181119_UNC31-K00269_0165_AH27WCBBXY_CCAACA_S12_L004_R1_001.unaln.bam 250215606 BAM unaligned CPTAC3 ced5682b-e0f8-408c-b57d-eebb7d24f57c 1cda16adbb0ef4e07d245a99ca07b719 { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor' } C3N-02088.miRNA-Seq.T.hg38 C3N-02088 LUAD miRNA-Seq tumor CPT0118290009 b7af346c-47ca-4077-93a7-d93a82fa9abc_mirnaseq_gdc_realn.bam 270952139 BAM harmonized CPTAC3 dba8dff2-c51f-437e-8ec8-aa7ce18ae754 17cf962b6a3ea213ede0e98acdc6c80a { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02088.RNA-Seq.chimeric.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 d788c3f7-89eb-4950-bbac-e688569e382b.rna_seq.chimeric.gdc_realn.bam 139916492 BAM chimeric harmonized CPTAC3 e194f2b8-2ef7-4421-ab38-faccaecc9453 b8a351fef68c460217599206e6427f6c { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02088.RNA-Seq.chimeric.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 ff47b401-83a1-472a-a0fd-25265d4823ec.rna_seq.chimeric.gdc_realn.bam 182187969 BAM chimeric harmonized CPTAC3 3166d7e5-d697-40d3-bf64-08a7edaa07db 3a0a3a90643bf005ad090ecdda6b89f8 { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02088.RNA-Seq.genomic.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 d788c3f7-89eb-4950-bbac-e688569e382b.rna_seq.genomic.gdc_realn.bam 8145046758 BAM genomic harmonized CPTAC3 74365404-64f5-49c5-95ad-c8009f6f32b8 3db17cf760134b2f5f1030975e4befad { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02088.RNA-Seq.genomic.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 ff47b401-83a1-472a-a0fd-25265d4823ec.rna_seq.genomic.gdc_realn.bam 9126567246 BAM genomic harmonized CPTAC3 7e35fcbd-c24c-473d-858c-c8342a193252 d0618cfdcdea47f597ef90af942760e2 { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02088.RNA-Seq.R1_L006.A C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3988623213 FASTQ R1_L006 unaligned CPTAC3 de174032-38c7-4a4e-afd6-e62a48933eb5 207293dfafd75e0a3edcc5b4f42244b3 { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02088.RNA-Seq.R1_L008.T C3N-02088 LUAD RNA-Seq tumor CPT0118290009 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L008_R1_001.fastq.gz 4337153116 FASTQ R1_L008 unaligned CPTAC3 c41683b4-49ec-48f7-b121-f24f68571a6c f624a0def72af27947e3f01609705ccb { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02088.RNA-Seq.R2_L006.A C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTCAA_S21_L006_R2_001.fastq.gz 4462595186 FASTQ R2_L006 unaligned CPTAC3 2ddac2ea-812f-4ec5-8ee1-11d1e1f68fad 5ae225b79a93d2cf6c821cc30b85becd { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02088.RNA-Seq.R2_L008.T C3N-02088 LUAD RNA-Seq tumor CPT0118290009 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L008_R2_001.fastq.gz 4807951183 FASTQ R2_L008 unaligned CPTAC3 904d799d-96ec-4f6d-adc1-b0e210d31122 77be07122b5ceea38210e952fd2b4e6a { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02088.RNA-Seq.transcriptome.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 d788c3f7-89eb-4950-bbac-e688569e382b.rna_seq.transcriptome.gdc_realn.bam 8730078589 BAM transcriptome harmonized CPTAC3 93082076-ccba-483a-8143-9de4e6505fb3 3bcf43a1139a4256b44332aec79e4c56 { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02088.RNA-Seq.transcriptome.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 ff47b401-83a1-472a-a0fd-25265d4823ec.rna_seq.transcriptome.gdc_realn.bam 10996437194 BAM transcriptome harmonized CPTAC3 2fd780c6-eef5-437a-a3a7-27df989f3462 75a2e48638ea77b7c64ae09201d06952 { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02088.RNA-Seq.chimeric.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 4d247eb0-36e2-4654-905d-70071a455f43.rna_seq.chimeric.gdc_realn.bam 139883611 BAM chimeric harmonized CPTAC3 89165a8b-370d-455b-bb86-c2c8eb2b4d27 62fb4a9cdc57dcf60ea92de691eb06c8 { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02088.RNA-Seq.chimeric.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 6031d9f9-a78e-490b-9ed3-1455a8d8a69a.rna_seq.chimeric.gdc_realn.bam 182168855 BAM chimeric harmonized CPTAC3 5b42212d-7d74-4c4a-87e7-0a3c79813fcf 765db8e934761c17bbd02173c5a88b50 { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02088.RNA-Seq.genomic.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 4d247eb0-36e2-4654-905d-70071a455f43.rna_seq.genomic.gdc_realn.bam 8145757366 BAM genomic harmonized CPTAC3 f72dd2c5-1dfb-4481-b9f2-e2948a82c611 a797bfc42d192f7e33a340f7bd46e8fa { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02088.RNA-Seq.genomic.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 6031d9f9-a78e-490b-9ed3-1455a8d8a69a.rna_seq.genomic.gdc_realn.bam 9128267851 BAM genomic harmonized CPTAC3 7e17c07e-8e72-499c-b3bc-2f267a7c3b8f 515d11fb52e4f11362cc9f8758a7a01c { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02088.RNA-Seq.R1_L006.A C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTCAA_S21_L006_R1_001.fastq.gz 3988623213 FASTQ R1_L006 unaligned CPTAC3 de174032-38c7-4a4e-afd6-e62a48933eb5 207293dfafd75e0a3edcc5b4f42244b3 { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02088.RNA-Seq.R1_L008.T C3N-02088 LUAD RNA-Seq tumor CPT0118290009 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L008_R1_001.fastq.gz 4337153116 FASTQ R1_L008 unaligned CPTAC3 c41683b4-49ec-48f7-b121-f24f68571a6c f624a0def72af27947e3f01609705ccb { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02088.RNA-Seq.R2_L006.A C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTCAA_S21_L006_R2_001.fastq.gz 4462595186 FASTQ R2_L006 unaligned CPTAC3 2ddac2ea-812f-4ec5-8ee1-11d1e1f68fad 5ae225b79a93d2cf6c821cc30b85becd { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02088.RNA-Seq.R2_L008.T C3N-02088 LUAD RNA-Seq tumor CPT0118290009 171116_UNC31-K00269_0093_BHMFKJBBXX_AGTTCC_S6_L008_R2_001.fastq.gz 4807951183 FASTQ R2_L008 unaligned CPTAC3 904d799d-96ec-4f6d-adc1-b0e210d31122 77be07122b5ceea38210e952fd2b4e6a { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02088.RNA-Seq.transcriptome.A.hg38 C3N-02088 LUAD RNA-Seq tissue_normal CPT0118310006 4d247eb0-36e2-4654-905d-70071a455f43.rna_seq.transcriptome.gdc_realn.bam 9900302561 BAM transcriptome harmonized CPTAC3 8f03eeba-e3b3-4177-a096-ddc83df83fac d98cf1053732cca42ad033009725f80e { 'aliquot_tag': 'ALQ_a26efb5c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02088.RNA-Seq.transcriptome.T.hg38 C3N-02088 LUAD RNA-Seq tumor CPT0118290009 6031d9f9-a78e-490b-9ed3-1455a8d8a69a.rna_seq.transcriptome.gdc_realn.bam 12548700075 BAM transcriptome harmonized CPTAC3 d64e8230-5f33-44b8-93b6-6175d80eed03 e8d2d4edeb2596a0c3cdfc2d08ff6998 { 'aliquot_tag': 'ALQ_c9fd7ea9', 'gdc_sample_type': 'Primary Tumor' } C3N-02088.WGS.A C3N-02088 LUAD WGS tissue_normal CPT0118310009 CPT0118310009.WholeGenome.RP-1303.bam 52416460437 BAM aligned CPTAC3 93afd6ad-639c-4473-adaf-fc9c13d5a424 89dffbe593768ce90ae2afbba667bb4a { 'aliquot_tag': 'ALQ_32d1e6cd', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02088.WGS.A.hg38 C3N-02088 LUAD WGS tissue_normal CPT0118310009 56eed8b7-85b5-40b4-906d-a6bad5a33ce9_wgs_gdc_realn.bam 77101901142 BAM harmonized CPTAC3 2d1961c3-0e09-4f0e-a179-d3d77108ae09 2f53b666977c61c13da4d651af19deb8 { 'aliquot_tag': 'ALQ_32d1e6cd', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02088.WGS.N C3N-02088 LUAD WGS blood_normal CPT0119510002 CPT0119510002.WholeGenome.RP-1303.bam 61670658984 BAM aligned CPTAC3 16819bf7-cde9-4155-8db9-917931cbe6aa 4429b2e99f8c41563e6f522dbd3cca52 { 'aliquot_tag': 'ALQ_d52dd7ec', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29233,12 +31316,12 @@ C3N-02089.miRNA-Seq.T C3N-02089 LUAD miRNA-Seq tumor CPT0118340009 181119_UNC31- C3N-02089.miRNA-Seq.T.hg38 C3N-02089 LUAD miRNA-Seq tumor CPT0118340009 b0f2aa34-0ca6-44e3-8eb4-5334b8680da1_mirnaseq_gdc_realn.bam 271549208 BAM harmonized CPTAC3 562ff34a-e416-4af3-9aab-b3ffd46a5e7d 2c14f8bfdc16dc4171386a4713fa33cc { 'aliquot_tag': 'ALQ_fa3169bd', 'gdc_sample_type': 'Primary Tumor' } C3N-02089.RNA-Seq.chimeric.A.hg38 C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 c8a487ef-9ccd-423d-801c-fcc3ec490632.rna_seq.chimeric.gdc_realn.bam 132506003 BAM chimeric harmonized CPTAC3 89ef336a-29ef-496d-b4fe-bec90e78dc51 4704dc02a93c8e8e00235d6a98b065f2 { 'aliquot_tag': 'ALQ_104e274c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02089.RNA-Seq.chimeric.T.hg38 C3N-02089 LUAD RNA-Seq tumor CPT0118340009 60315e1a-8879-4863-8c60-3e45bdfefe4d.rna_seq.chimeric.gdc_realn.bam 160271349 BAM chimeric harmonized CPTAC3 0cc763d9-a767-4cde-ab57-3261996338f6 a841b9b114eb84cebe2a910a381ece4c { 'aliquot_tag': 'ALQ_fa3169bd', 'gdc_sample_type': 'Primary Tumor' } -C3N-02089.RNA-Seq.genomic.A.hg38 C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 c8a487ef-9ccd-423d-801c-fcc3ec490632.rna_seq.genomic.gdc_realn.bam 8915906068 BAM genomic harmonized CPTAC3 431c2a3c-3185-4b53-b8e1-cb461b06ccee 68c9106410f98bde404c7a41e9fb65f3 { 'aliquot_tag': 'ALQ_104e274c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02089.RNA-Seq.genomic.A.hg38 C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 c8a487ef-9ccd-423d-801c-fcc3ec490632.rna_seq.genomic.gdc_realn.bam 8915906068 BAM genomic harmonized CPTAC3 0a1b15b1-f7f6-44a5-b45c-0689f810cd1e 68c9106410f98bde404c7a41e9fb65f3 { 'aliquot_tag': 'ALQ_104e274c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02089.RNA-Seq.genomic.T.hg38 C3N-02089 LUAD RNA-Seq tumor CPT0118340009 60315e1a-8879-4863-8c60-3e45bdfefe4d.rna_seq.genomic.gdc_realn.bam 8920853591 BAM genomic harmonized CPTAC3 1f556f48-a65a-4ecf-837f-1d43874e4cbc eb25efd20da116ab162c2336416eddab { 'aliquot_tag': 'ALQ_fa3169bd', 'gdc_sample_type': 'Primary Tumor' } -C3N-02089.RNA-Seq.R1_L005.A C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTTCC_S17_L005_R1_001.fastq.gz 4006816794 FASTQ R1_L005 unaligned CPTAC3 6cae1ea6-88e5-40dd-915d-432fc9c93481 10c6bc5b72b4658b72e17771d97428a8 { 'aliquot_tag': 'ALQ_104e274c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02089.RNA-Seq.R1_L008.T C3N-02089 LUAD RNA-Seq tumor CPT0118340009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L008_R1_001.fastq.gz 3957112705 FASTQ R1_L008 unaligned CPTAC3 f55ad41e-1de0-4cea-a25b-0cd1080a0fa3 58445f1119c42337b3b8c209621cb854 { 'aliquot_tag': 'ALQ_fa3169bd', 'gdc_sample_type': 'Primary Tumor' } -C3N-02089.RNA-Seq.R2_L005.A C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTTCC_S17_L005_R2_001.fastq.gz 4369116046 FASTQ R2_L005 unaligned CPTAC3 3e472cb4-dad7-47d3-a999-ba6a1ba48c6a 3fe1473bd77f927b6513ed72299e24ff { 'aliquot_tag': 'ALQ_104e274c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02089.RNA-Seq.R2_L008.T C3N-02089 LUAD RNA-Seq tumor CPT0118340009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L008_R2_001.fastq.gz 4364269997 FASTQ R2_L008 unaligned CPTAC3 7b5f3cbe-3f29-4590-8489-0df8a8a69033 f9a52f0c673ee07252a14afeeab96fd3 { 'aliquot_tag': 'ALQ_fa3169bd', 'gdc_sample_type': 'Primary Tumor' } +C3N-02089.RNA-Seq.R1_L005.A C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTTCC_S17_L005_R1_001.fastq.gz 4006816794 FASTQ R1_L005 unaligned CPTAC3 6cae1ea6-88e5-40dd-915d-432fc9c93481 10c6bc5b72b4658b72e17771d97428a8 { 'aliquot_tag': 'ALQ_104e274c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02089.RNA-Seq.R1_L008.T C3N-02089 LUAD RNA-Seq tumor CPT0118340009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L008_R1_001.fastq.gz 3957112705 FASTQ R1_L008 unaligned CPTAC3 f55ad41e-1de0-4cea-a25b-0cd1080a0fa3 58445f1119c42337b3b8c209621cb854 { 'aliquot_tag': 'ALQ_fa3169bd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02089.RNA-Seq.R2_L005.A C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 180109_UNC31-K00269_0107_AHNHY2BBXX_AGTTCC_S17_L005_R2_001.fastq.gz 4369116046 FASTQ R2_L005 unaligned CPTAC3 3e472cb4-dad7-47d3-a999-ba6a1ba48c6a 3fe1473bd77f927b6513ed72299e24ff { 'aliquot_tag': 'ALQ_104e274c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02089.RNA-Seq.R2_L008.T C3N-02089 LUAD RNA-Seq tumor CPT0118340009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L008_R2_001.fastq.gz 4364269997 FASTQ R2_L008 unaligned CPTAC3 7b5f3cbe-3f29-4590-8489-0df8a8a69033 f9a52f0c673ee07252a14afeeab96fd3 { 'aliquot_tag': 'ALQ_fa3169bd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02089.RNA-Seq.transcriptome.A.hg38 C3N-02089 LUAD RNA-Seq tissue_normal CPT0118360006 c8a487ef-9ccd-423d-801c-fcc3ec490632.rna_seq.transcriptome.gdc_realn.bam 9704461517 BAM transcriptome harmonized CPTAC3 1b81021c-6749-4fe4-ba89-58df8f39950f b8ad36c0326de611fe20bf24bc59059d { 'aliquot_tag': 'ALQ_104e274c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02089.RNA-Seq.transcriptome.T.hg38 C3N-02089 LUAD RNA-Seq tumor CPT0118340009 60315e1a-8879-4863-8c60-3e45bdfefe4d.rna_seq.transcriptome.gdc_realn.bam 10384239278 BAM transcriptome harmonized CPTAC3 51e3bf9b-281f-4e91-a5ea-9e46ca756881 394d472dfe9132d7a91b095c73112844 { 'aliquot_tag': 'ALQ_fa3169bd', 'gdc_sample_type': 'Primary Tumor' } C3N-02089.WGS.A C3N-02089 LUAD WGS tissue_normal CPT0118360009 CPT0118360009.WholeGenome.RP-1303.bam 57379626853 BAM aligned CPTAC3 cc944745-f147-44aa-8aef-b7b961026a2a bea6c5b777b337cd3c4c3025e8148312 { 'aliquot_tag': 'ALQ_80f13add', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -29261,16 +31344,16 @@ C3N-02090.miRNA-Seq.A C3N-02090 LUAD miRNA-Seq tissue_normal CPT0118410006 18110 C3N-02090.miRNA-Seq.A.hg38 C3N-02090 LUAD miRNA-Seq tissue_normal CPT0118410006 433bc38e-cb28-44e5-9f11-795e07f70448_mirnaseq_gdc_realn.bam 295073507 BAM harmonized CPTAC3 b54a2d0b-9518-445d-9fb5-233a85dcce36 b8714de7d9d8913bde7a45336bcb7d20 { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02090.miRNA-Seq.T C3N-02090 LUAD miRNA-Seq tumor CPT0118400009 181119_UNC31-K00269_0165_AH27WCBBXY_CTAGCT_S14_L004_R1_001.unaln.bam 236069079 BAM unaligned CPTAC3 8998f8ef-e988-45c6-8bae-76134c838031 09e729e8e7726027110c38061864e9d8 { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor' } C3N-02090.miRNA-Seq.T.hg38 C3N-02090 LUAD miRNA-Seq tumor CPT0118400009 6af56855-7f72-43f9-8bc1-485b0bcc2243_mirnaseq_gdc_realn.bam 253801738 BAM harmonized CPTAC3 70fb4abf-7167-482f-b6cb-f2ec27e70c62 b97a4a3f6bd9fdcfac8ff3b72f82adfe { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02090.RNA-Seq.chimeric.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 14e802ab-4fbe-4408-9663-4c8facccc0fd.rna_seq.chimeric.gdc_realn.bam 137425885 BAM chimeric harmonized CPTAC3 6c2530ca-1f49-419c-80eb-2ed7de3bc4d2 5b77cf11b639e75d265d43ba0c56e6e9 { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02090.RNA-Seq.chimeric.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 6c908c73-f536-476e-94bd-e9c00953e86c.rna_seq.chimeric.gdc_realn.bam 108713969 BAM chimeric harmonized CPTAC3 a65b2907-776c-4d77-ae8a-1e527e0148e4 822766a3518b26909f420e04f72363fd { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02090.RNA-Seq.genomic.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 14e802ab-4fbe-4408-9663-4c8facccc0fd.rna_seq.genomic.gdc_realn.bam 8784658831 BAM genomic harmonized CPTAC3 dd41078a-a9de-428d-baab-1582627fe3db 73ba2aa4b372b5235b3cf273b0c242c7 { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02090.RNA-Seq.genomic.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 6c908c73-f536-476e-94bd-e9c00953e86c.rna_seq.genomic.gdc_realn.bam 9616600501 BAM genomic harmonized CPTAC3 29fc8114-77e7-42a8-bf47-2215cf741654 f04aed00268f061c09ed3c43d45c4635 { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02090.RNA-Seq.R1_L005.A C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATGTCA_S16_L005_R1_001.fastq.gz 4049679833 FASTQ R1_L005 unaligned CPTAC3 63bd9e37-4274-4c07-b880-dcf308ddab13 706215e612ede0dd65aa745d6a978b40 { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02090.RNA-Seq.R1_L008.T C3N-02090 LUAD RNA-Seq tumor CPT0118400009 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L008_R1_001.fastq.gz 4028091448 FASTQ R1_L008 unaligned CPTAC3 a7493980-2b11-4a43-8e50-6e6840aa2022 c62ebd9d63bbcd7a35b9a0971e31484c { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02090.RNA-Seq.R2_L005.A C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATGTCA_S16_L005_R2_001.fastq.gz 4417367803 FASTQ R2_L005 unaligned CPTAC3 baf794a7-7617-41df-ae12-1dff298766a0 a1dffa2dc1b179bd9028e491bad839ca { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02090.RNA-Seq.R2_L008.T C3N-02090 LUAD RNA-Seq tumor CPT0118400009 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L008_R2_001.fastq.gz 4295268985 FASTQ R2_L008 unaligned CPTAC3 5b473429-77ce-4a37-aa9d-cc2635da3ec8 e9ee0b1e2d0d7398a972777dfd07867a { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02090.RNA-Seq.transcriptome.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 14e802ab-4fbe-4408-9663-4c8facccc0fd.rna_seq.transcriptome.gdc_realn.bam 8606614294 BAM transcriptome harmonized CPTAC3 279ddf93-b77a-401b-a898-0bc9b02f4082 2a042151cba284eea3a8708e47cfaaaf { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02090.RNA-Seq.transcriptome.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 6c908c73-f536-476e-94bd-e9c00953e86c.rna_seq.transcriptome.gdc_realn.bam 8869816218 BAM transcriptome harmonized CPTAC3 df59cc13-3b5d-4175-b998-24290d0a515e 784c08a0528205b9c3034cdcebd2f30b { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02090.RNA-Seq.chimeric.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 272d5771-87ee-4788-9cc5-d6a551336292.rna_seq.chimeric.gdc_realn.bam 137402159 BAM chimeric harmonized CPTAC3 63641794-618a-4d93-abaa-e86243545b25 bf2201592b192e91d0a721667cc275cf { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02090.RNA-Seq.chimeric.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 f035e2a6-847d-4b83-89f2-542a4bd2bf3f.rna_seq.chimeric.gdc_realn.bam 108705140 BAM chimeric harmonized CPTAC3 7ade0c41-44f0-4cc0-b532-0b3e4bff63f6 9ddd31a722531125b2b682514fea34c8 { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02090.RNA-Seq.genomic.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 272d5771-87ee-4788-9cc5-d6a551336292.rna_seq.genomic.gdc_realn.bam 8785096664 BAM genomic harmonized CPTAC3 7f44964f-3f12-4666-bfc9-56d7aac25c9c 2d83b33999d2e300e89c7746a8165787 { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02090.RNA-Seq.genomic.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 f035e2a6-847d-4b83-89f2-542a4bd2bf3f.rna_seq.genomic.gdc_realn.bam 9617815310 BAM genomic harmonized CPTAC3 8788b316-8d5a-43d1-8728-7165feddeabf a011a49a6b90b0a0adbd0d9dd298ccd9 { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02090.RNA-Seq.R1_L005.A C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATGTCA_S16_L005_R1_001.fastq.gz 4049679833 FASTQ R1_L005 unaligned CPTAC3 63bd9e37-4274-4c07-b880-dcf308ddab13 706215e612ede0dd65aa745d6a978b40 { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02090.RNA-Seq.R1_L008.T C3N-02090 LUAD RNA-Seq tumor CPT0118400009 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L008_R1_001.fastq.gz 4028091448 FASTQ R1_L008 unaligned CPTAC3 a7493980-2b11-4a43-8e50-6e6840aa2022 c62ebd9d63bbcd7a35b9a0971e31484c { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02090.RNA-Seq.R2_L005.A C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 180109_UNC31-K00269_0107_AHNHY2BBXX_ATGTCA_S16_L005_R2_001.fastq.gz 4417367803 FASTQ R2_L005 unaligned CPTAC3 baf794a7-7617-41df-ae12-1dff298766a0 a1dffa2dc1b179bd9028e491bad839ca { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02090.RNA-Seq.R2_L008.T C3N-02090 LUAD RNA-Seq tumor CPT0118400009 171116_UNC31-K00269_0093_BHMFKJBBXX_CCGTCC_S7_L008_R2_001.fastq.gz 4295268985 FASTQ R2_L008 unaligned CPTAC3 5b473429-77ce-4a37-aa9d-cc2635da3ec8 e9ee0b1e2d0d7398a972777dfd07867a { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02090.RNA-Seq.transcriptome.A.hg38 C3N-02090 LUAD RNA-Seq tissue_normal CPT0118410006 272d5771-87ee-4788-9cc5-d6a551336292.rna_seq.transcriptome.gdc_realn.bam 9758980234 BAM transcriptome harmonized CPTAC3 ff7e0747-c386-4518-846d-ca8f9716c5f2 a8c40e87ea57d4415f81bb4f5cc63dcb { 'aliquot_tag': 'ALQ_bf6bcbe4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02090.RNA-Seq.transcriptome.T.hg38 C3N-02090 LUAD RNA-Seq tumor CPT0118400009 f035e2a6-847d-4b83-89f2-542a4bd2bf3f.rna_seq.transcriptome.gdc_realn.bam 9983681128 BAM transcriptome harmonized CPTAC3 32aee39e-872a-4b92-9954-0273493a2a63 4bac89bad217c44d0fbf90ba159849db { 'aliquot_tag': 'ALQ_12b4ffc5', 'gdc_sample_type': 'Primary Tumor' } C3N-02090.WGS.A C3N-02090 LUAD WGS tissue_normal CPT0118410009 CPT0118410009.WholeGenome.RP-1303.bam 57671007203 BAM aligned CPTAC3 6b629d6b-8b03-4a46-a1cc-a6fa4fd2c5a3 a53b3f3483c8e3388c4afaf2aa3d469f { 'aliquot_tag': 'ALQ_2fd4d675', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02090.WGS.A.hg38 C3N-02090 LUAD WGS tissue_normal CPT0118410009 483f19ba-872e-4dd1-87bb-376941d19e2c_wgs_gdc_realn.bam 83956334240 BAM harmonized CPTAC3 20e7625f-1dd3-4def-9fa1-95c47bea4835 f483c491456d6728ca9e8cde8b89a04d { 'aliquot_tag': 'ALQ_2fd4d675', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02090.WGS.N C3N-02090 LUAD WGS blood_normal CPT0119630002 CPT0119630002.WholeGenome.RP-1303.bam 58873017214 BAM aligned CPTAC3 3344c484-7c13-4ada-9edf-efbbc5886261 1dc9b6044d66b615d901cbc64b3c13c1 { 'aliquot_tag': 'ALQ_2979f622', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29291,16 +31374,16 @@ C3N-02141.miRNA-Seq.A C3N-02141 LUAD miRNA-Seq tissue_normal CPT0118470006 18110 C3N-02141.miRNA-Seq.A.hg38 C3N-02141 LUAD miRNA-Seq tissue_normal CPT0118470006 35c8a103-8e84-40fe-8b68-36f3f084a5a5_mirnaseq_gdc_realn.bam 305204431 BAM harmonized CPTAC3 6d7fc0b4-fde5-4ca7-a6a6-d797c65284a7 0a37d9824bfb66a21fc5b0623adaaf59 { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02141.miRNA-Seq.T C3N-02141 LUAD miRNA-Seq tumor CPT0118460009 181119_UNC31-K00269_0165_AH27WCBBXY_CTATAC_S15_L004_R1_001.unaln.bam 294023834 BAM unaligned CPTAC3 b9bf501c-e2c7-47ab-a757-2d527a15c052 d1ebe00a0566f9ea4f6e491ccdc32151 { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor' } C3N-02141.miRNA-Seq.T.hg38 C3N-02141 LUAD miRNA-Seq tumor CPT0118460009 7116f11b-655d-458d-8965-f15867616114_mirnaseq_gdc_realn.bam 317941617 BAM harmonized CPTAC3 9cd7227d-a8b5-4b22-9177-94ec4bac17f1 ca06a2b2e85fdee19aea741e10809940 { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor' } -C3N-02141.RNA-Seq.chimeric.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 fe00a4e0-336d-4879-86f8-4e79383eba55.rna_seq.chimeric.gdc_realn.bam 117946602 BAM chimeric harmonized CPTAC3 0ceeb070-cdaf-4212-bb3d-e419291f8a46 ac0236e6d4985c34f2d4a6447ecef06e { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02141.RNA-Seq.chimeric.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4894df05-cb06-4084-b63c-2e7e1e353250.rna_seq.chimeric.gdc_realn.bam 89089796 BAM chimeric harmonized CPTAC3 0a7ce8a3-ade5-483d-9400-199b75eb497c 5bfd1b4be5c68199d18ad643724d2c8e { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor' } -C3N-02141.RNA-Seq.genomic.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 fe00a4e0-336d-4879-86f8-4e79383eba55.rna_seq.genomic.gdc_realn.bam 8269904326 BAM genomic harmonized CPTAC3 9d53c1d4-55fa-48a0-a590-631b2b245cba 33952d709eac300455731bab2b219451 { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02141.RNA-Seq.genomic.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4894df05-cb06-4084-b63c-2e7e1e353250.rna_seq.genomic.gdc_realn.bam 9049629006 BAM genomic harmonized CPTAC3 7406f12d-1ef3-4081-8bfa-de5738ab9700 af9983ffc7f7776287bfe6f29f23bfb6 { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor' } -C3N-02141.RNA-Seq.R1_L005.A C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 180109_UNC31-K00269_0107_AHNHY2BBXX_CCGTCC_S15_L005_R1_001.fastq.gz 3939827787 FASTQ R1_L005 unaligned CPTAC3 52a5af0c-f2a3-4d46-965d-ce9c92537db6 04210e3de76c43908d3e931e540537bb { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02141.RNA-Seq.R1_L007.T C3N-02141 LUAD RNA-Seq tumor CPT0118460009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 3931214925 FASTQ R1_L007 unaligned CPTAC3 13374d3a-5f40-4428-8f3e-9cf5821f41b4 cb20c3a55571c1b43e84d9e85906b41a { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor' } -C3N-02141.RNA-Seq.R2_L005.A C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 180109_UNC31-K00269_0107_AHNHY2BBXX_CCGTCC_S15_L005_R2_001.fastq.gz 4028003270 FASTQ R2_L005 unaligned CPTAC3 66c0ad73-f4a1-4e83-be0c-83b6741f7537 c44a7188f0e8aca2d806ba69684ef4ae { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02141.RNA-Seq.R2_L007.T C3N-02141 LUAD RNA-Seq tumor CPT0118460009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4371695744 FASTQ R2_L007 unaligned CPTAC3 8e5d70f1-d52e-4288-a4f6-bf1115a72aa5 50b39be78b8c71ea1ff0e00f282ca698 { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor' } -C3N-02141.RNA-Seq.transcriptome.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 fe00a4e0-336d-4879-86f8-4e79383eba55.rna_seq.transcriptome.gdc_realn.bam 8086734466 BAM transcriptome harmonized CPTAC3 56efd7a0-6db6-4252-b1ca-d00e12e22424 39c71fdd5775243bc6b6e75376c547df { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02141.RNA-Seq.transcriptome.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4894df05-cb06-4084-b63c-2e7e1e353250.rna_seq.transcriptome.gdc_realn.bam 9955245396 BAM transcriptome harmonized CPTAC3 a9af38e2-6003-4625-bc6e-4099f19c5d2a ae8a36f510689f7686eae5d2030a9d9c { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor' } +C3N-02141.RNA-Seq.chimeric.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 975db919-5c43-4a49-b63e-988ce4309dd8.rna_seq.chimeric.gdc_realn.bam 117920768 BAM chimeric harmonized CPTAC3 aa4ccfa5-73bc-4bc0-8479-51f2798a658d 1964447a33d596a344b99282fd0270f2 { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02141.RNA-Seq.chimeric.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4ce2ded1-590b-460a-8c81-d0decd76b67f.rna_seq.chimeric.gdc_realn.bam 89089722 BAM chimeric harmonized CPTAC3 c8f8b64f-a254-482c-b9fa-df04655c6589 bcd7d8282814f58c1f08c62b4502637e { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor' } +C3N-02141.RNA-Seq.genomic.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 975db919-5c43-4a49-b63e-988ce4309dd8.rna_seq.genomic.gdc_realn.bam 8270521489 BAM genomic harmonized CPTAC3 06cc2061-57ab-43ef-9448-47c61fdaf0ec abe3e60e78f63d70fc0dd6a2d0cba327 { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02141.RNA-Seq.genomic.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4ce2ded1-590b-460a-8c81-d0decd76b67f.rna_seq.genomic.gdc_realn.bam 9053110390 BAM genomic harmonized CPTAC3 f12f5ef4-3ff1-4d2d-b911-d485ac3ac8dc 3b249902e8ae8995f99d2ef9a247036b { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor' } +C3N-02141.RNA-Seq.R1_L005.A C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 180109_UNC31-K00269_0107_AHNHY2BBXX_CCGTCC_S15_L005_R1_001.fastq.gz 3939827787 FASTQ R1_L005 unaligned CPTAC3 52a5af0c-f2a3-4d46-965d-ce9c92537db6 04210e3de76c43908d3e931e540537bb { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02141.RNA-Seq.R1_L007.T C3N-02141 LUAD RNA-Seq tumor CPT0118460009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L007_R1_001.fastq.gz 3931214925 FASTQ R1_L007 unaligned CPTAC3 13374d3a-5f40-4428-8f3e-9cf5821f41b4 cb20c3a55571c1b43e84d9e85906b41a { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02141.RNA-Seq.R2_L005.A C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 180109_UNC31-K00269_0107_AHNHY2BBXX_CCGTCC_S15_L005_R2_001.fastq.gz 4028003270 FASTQ R2_L005 unaligned CPTAC3 66c0ad73-f4a1-4e83-be0c-83b6741f7537 c44a7188f0e8aca2d806ba69684ef4ae { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02141.RNA-Seq.R2_L007.T C3N-02141 LUAD RNA-Seq tumor CPT0118460009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTCCGC_S3_L007_R2_001.fastq.gz 4371695744 FASTQ R2_L007 unaligned CPTAC3 8e5d70f1-d52e-4288-a4f6-bf1115a72aa5 50b39be78b8c71ea1ff0e00f282ca698 { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02141.RNA-Seq.transcriptome.A.hg38 C3N-02141 LUAD RNA-Seq tissue_normal CPT0118470006 975db919-5c43-4a49-b63e-988ce4309dd8.rna_seq.transcriptome.gdc_realn.bam 9157906695 BAM transcriptome harmonized CPTAC3 fa7bbb25-d9d4-4b81-8918-2b5812d1fd6e 57227199a5c6b62bdefc6c6c56088884 { 'aliquot_tag': 'ALQ_302b3e44', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02141.RNA-Seq.transcriptome.T.hg38 C3N-02141 LUAD RNA-Seq tumor CPT0118460009 4ce2ded1-590b-460a-8c81-d0decd76b67f.rna_seq.transcriptome.gdc_realn.bam 11192306625 BAM transcriptome harmonized CPTAC3 7143fd08-8016-478c-a85f-16ff53fcda62 b367ea8daa8b0ace687284676d87e2a2 { 'aliquot_tag': 'ALQ_9df40a65', 'gdc_sample_type': 'Primary Tumor' } C3N-02141.WGS.A C3N-02141 LUAD WGS tissue_normal CPT0118470009 CPT0118470009.WholeGenome.RP-1303.bam 54043357457 BAM aligned CPTAC3 25c78b39-62c9-4180-ae07-e8b01f7cf6eb 928c08e6396160340caf214fcc83bed0 { 'aliquot_tag': 'ALQ_a09423d5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02141.WGS.A.hg38 C3N-02141 LUAD WGS tissue_normal CPT0118470009 77df72d0-2c0f-451a-886b-729a5a49fe9e_wgs_gdc_realn.bam 80580473240 BAM harmonized CPTAC3 92c541b8-fda9-4943-96e1-5ff133718d21 bdda41776191b8542360ff66eafa0a2d { 'aliquot_tag': 'ALQ_a09423d5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02141.WGS.N C3N-02141 LUAD WGS blood_normal CPT0119690002 CPT0119690002.WholeGenome.RP-1303.bam 59351101934 BAM aligned CPTAC3 9ae4097b-b7d6-495d-9bef-10baa2f7c660 b06daa7fa4578ec6c26342a6db7ff97d { 'aliquot_tag': 'ALQ_63c9ee83', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29321,16 +31404,16 @@ C3N-02142.miRNA-Seq.A C3N-02142 LUAD miRNA-Seq tissue_normal CPT0118530006 18110 C3N-02142.miRNA-Seq.A.hg38 C3N-02142 LUAD miRNA-Seq tissue_normal CPT0118530006 66c55785-e9d2-4bfe-a365-27e8b47b0d9f_mirnaseq_gdc_realn.bam 316836400 BAM harmonized CPTAC3 5eb56e60-f187-44e5-878e-da17cc7885e5 669c757c997be67b81389aac8553f3a9 { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02142.miRNA-Seq.T C3N-02142 LUAD miRNA-Seq tumor CPT0118510009 181119_UNC31-K00269_0165_AH27WCBBXY_CTCAGA_S16_L004_R1_001.unaln.bam 218332072 BAM unaligned CPTAC3 1ad648eb-1fa8-4ea8-89bb-014ab63661d5 5daa0238600b26b93ff88ac92288e12f { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor' } C3N-02142.miRNA-Seq.T.hg38 C3N-02142 LUAD miRNA-Seq tumor CPT0118510009 088309f7-e140-458e-81a3-7312bee48795_mirnaseq_gdc_realn.bam 240951139 BAM harmonized CPTAC3 848649c8-91cb-4df9-a4a7-041ed972fb8f 97b749a4bdbe4f543347c50ceaeb0124 { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02142.RNA-Seq.chimeric.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 4cbdab66-b383-49fb-9e33-60a5fabaca1c.rna_seq.chimeric.gdc_realn.bam 120032978 BAM chimeric harmonized CPTAC3 f45f1fff-7987-46ff-b674-5b83458ac64b 4da600123b449cd0fc8211b1ac49fe96 { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02142.RNA-Seq.chimeric.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 93b9bddd-7590-4887-929a-ff7b5e36a730.rna_seq.chimeric.gdc_realn.bam 127799263 BAM chimeric harmonized CPTAC3 36b2619b-d016-4dba-ae1f-bff3c6595007 395e6fa45e86c8830067ad8470111457 { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02142.RNA-Seq.genomic.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 4cbdab66-b383-49fb-9e33-60a5fabaca1c.rna_seq.genomic.gdc_realn.bam 10091504853 BAM genomic harmonized CPTAC3 4305ba25-c696-4f1e-b769-e852605bd7a3 6ca8ae66359e71b0f51300f431cf50cd { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02142.RNA-Seq.genomic.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 93b9bddd-7590-4887-929a-ff7b5e36a730.rna_seq.genomic.gdc_realn.bam 8828776739 BAM genomic harmonized CPTAC3 43c6e5a2-b49e-43b0-991e-f6ba71310046 586e50e0045f777dd93e6161f5347730 { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02142.RNA-Seq.R1_L005.A C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTCCGC_S18_L005_R1_001.fastq.gz 4505798595 FASTQ R1_L005 unaligned CPTAC3 bb829216-c187-4336-84b8-f0f1c64220af aa4a1574d4433bb0c97879fd681ad1c7 { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02142.RNA-Seq.R1_L007.T C3N-02142 LUAD RNA-Seq tumor CPT0118510009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3849498448 FASTQ R1_L007 unaligned CPTAC3 571952bb-c06c-466a-ad6b-5857fc76dde1 28166f3facaeb959f6f12f2e4456e0fe { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02142.RNA-Seq.R2_L005.A C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTCCGC_S18_L005_R2_001.fastq.gz 5018384513 FASTQ R2_L005 unaligned CPTAC3 4be3adf5-e32b-483c-bf8c-653ea7e322e9 a6d21d1dcc803dec69199145b5370e49 { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02142.RNA-Seq.R2_L007.T C3N-02142 LUAD RNA-Seq tumor CPT0118510009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 4030858606 FASTQ R2_L007 unaligned CPTAC3 a90f7366-6262-410f-96c7-44efcdef156a 52f623b744d4af23f6cb49ac1fbb4c32 { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02142.RNA-Seq.transcriptome.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 4cbdab66-b383-49fb-9e33-60a5fabaca1c.rna_seq.transcriptome.gdc_realn.bam 10738844282 BAM transcriptome harmonized CPTAC3 1f5fce8c-2a69-446c-be49-1e44fa89ff56 6f6ac970694fcbd6aa506cf7d9456593 { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02142.RNA-Seq.transcriptome.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 93b9bddd-7590-4887-929a-ff7b5e36a730.rna_seq.transcriptome.gdc_realn.bam 9251205438 BAM transcriptome harmonized CPTAC3 19172ef4-7944-45c5-9595-761118f9504e 36bb8dc72bf0d4dce8d796f19706a23e { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02142.RNA-Seq.chimeric.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 8f3ac38e-831d-4935-9cc2-15b27fba845e.rna_seq.chimeric.gdc_realn.bam 120017125 BAM chimeric harmonized CPTAC3 4ec22e10-9550-438e-abb6-71eca8d1a27f 4e7548934714760da5d25a737a24261b { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02142.RNA-Seq.chimeric.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 e3990f94-cee1-4404-ab7e-0a054d1a6897.rna_seq.chimeric.gdc_realn.bam 127797808 BAM chimeric harmonized CPTAC3 681f42b3-a880-422d-a7fb-c69c1516f827 97fd20c9f7a46d5ea17be94212dc295f { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02142.RNA-Seq.genomic.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 8f3ac38e-831d-4935-9cc2-15b27fba845e.rna_seq.genomic.gdc_realn.bam 10093006027 BAM genomic harmonized CPTAC3 2fde099c-d773-4b45-ae32-91087e201de8 5d62d299e09c307a86a8c7b1e684e55a { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02142.RNA-Seq.genomic.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 e3990f94-cee1-4404-ab7e-0a054d1a6897.rna_seq.genomic.gdc_realn.bam 8830687443 BAM genomic harmonized CPTAC3 bf881673-a81c-46cb-abd6-11bbbb4b8dae 089c10ee575e84e1e91589f11cafe176 { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02142.RNA-Seq.R1_L005.A C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTCCGC_S18_L005_R1_001.fastq.gz 4505798595 FASTQ R1_L005 unaligned CPTAC3 bb829216-c187-4336-84b8-f0f1c64220af aa4a1574d4433bb0c97879fd681ad1c7 { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02142.RNA-Seq.R1_L007.T C3N-02142 LUAD RNA-Seq tumor CPT0118510009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L007_R1_001.fastq.gz 3849498448 FASTQ R1_L007 unaligned CPTAC3 571952bb-c06c-466a-ad6b-5857fc76dde1 28166f3facaeb959f6f12f2e4456e0fe { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02142.RNA-Seq.R2_L005.A C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTCCGC_S18_L005_R2_001.fastq.gz 5018384513 FASTQ R2_L005 unaligned CPTAC3 4be3adf5-e32b-483c-bf8c-653ea7e322e9 a6d21d1dcc803dec69199145b5370e49 { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02142.RNA-Seq.R2_L007.T C3N-02142 LUAD RNA-Seq tumor CPT0118510009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L007_R2_001.fastq.gz 4030858606 FASTQ R2_L007 unaligned CPTAC3 a90f7366-6262-410f-96c7-44efcdef156a 52f623b744d4af23f6cb49ac1fbb4c32 { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02142.RNA-Seq.transcriptome.A.hg38 C3N-02142 LUAD RNA-Seq tissue_normal CPT0118530006 8f3ac38e-831d-4935-9cc2-15b27fba845e.rna_seq.transcriptome.gdc_realn.bam 12210847532 BAM transcriptome harmonized CPTAC3 a9d3c022-1de6-4b6f-b171-6d0bfae30f3e 2c7820be2f830583bf0162d513363b68 { 'aliquot_tag': 'ALQ_ef74b21', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02142.RNA-Seq.transcriptome.T.hg38 C3N-02142 LUAD RNA-Seq tumor CPT0118510009 e3990f94-cee1-4404-ab7e-0a054d1a6897.rna_seq.transcriptome.gdc_realn.bam 10404506004 BAM transcriptome harmonized CPTAC3 69debd30-86ca-43c1-b8a0-092cf2a5eb81 7d4e4389f31eecffc6d3a8c7af53764c { 'aliquot_tag': 'ALQ_e48805d0', 'gdc_sample_type': 'Primary Tumor' } C3N-02142.WGS.A C3N-02142 LUAD WGS tissue_normal CPT0118530009 CPT0118530009.WholeGenome.RP-1303.bam 55619872624 BAM aligned CPTAC3 27631002-af91-42b7-a8fc-9fa029648d81 32cafdd277a0b61492c13ae6bc58b4bc { 'aliquot_tag': 'ALQ_9e4856b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02142.WGS.A.hg38 C3N-02142 LUAD WGS tissue_normal CPT0118530009 98b6469b-5549-4697-9956-9be5af2ed296_wgs_gdc_realn.bam 80413524966 BAM harmonized CPTAC3 42f6ba5b-a57d-45e1-8eb6-1deb9a118b94 21379a9911087f3a6d83765cfa6b4d84 { 'aliquot_tag': 'ALQ_9e4856b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02142.WGS.N C3N-02142 LUAD WGS blood_normal CPT0119750002 CPT0119750002.WholeGenome.RP-1303.bam 58130859670 BAM aligned CPTAC3 58455428-b128-473d-bcde-37bf9570c74e 134761e87aa6bfe0cbc82d48c20a6f93 { 'aliquot_tag': 'ALQ_6d65d027', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29351,16 +31434,16 @@ C3N-02143.miRNA-Seq.A C3N-02143 LUAD miRNA-Seq tissue_normal CPT0213250009 19071 C3N-02143.miRNA-Seq.A.hg38 C3N-02143 LUAD miRNA-Seq tissue_normal CPT0213250009 0618e73e-34d2-4b17-84ac-fe244f57d3d2_mirnaseq_gdc_realn.bam 249973840 BAM harmonized CPTAC3 c8dd0faf-16fa-48b9-9f00-6be322fe1799 f770e8ec4c09dd9f9ec59c2fbfbd7f29 { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02143.miRNA-Seq.T C3N-02143 LUAD miRNA-Seq tumor CPT0213230009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTGGCC_S16_L005_R1_001.unaln.bam 205547753 BAM unaligned CPTAC3 ae04dd1f-33b0-48b6-9198-9816537bd38e 6b3d34b384c079bd9a685df139191174 { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor' } C3N-02143.miRNA-Seq.T.hg38 C3N-02143 LUAD miRNA-Seq tumor CPT0213230009 815a1237-cc0a-4ddc-85fa-d5b4361ba214_mirnaseq_gdc_realn.bam 229185180 BAM harmonized CPTAC3 577f076b-dfb9-488d-af0e-e863d24c7a73 6b6e0107e781679ec37a7258af16b938 { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor' } -C3N-02143.RNA-Seq.chimeric.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 13c005f1-4df7-49d5-be2d-b5f642dcb503.rna_seq.chimeric.gdc_realn.bam 42392545 BAM chimeric harmonized CPTAC3 b0b4bf55-c36b-4a13-bb2a-87ea9e547471 046de5d62226a07051813b71c61f27d8 { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02143.RNA-Seq.chimeric.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 1bd74da8-5a7a-4029-aded-2a0f1a36ddbb.rna_seq.chimeric.gdc_realn.bam 25645180 BAM chimeric harmonized CPTAC3 a4a77450-dcce-4216-b673-ae8b8e1b5942 d205448d4f42f51875eea19901f50200 { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor' } -C3N-02143.RNA-Seq.genomic.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 13c005f1-4df7-49d5-be2d-b5f642dcb503.rna_seq.genomic.gdc_realn.bam 10062199193 BAM genomic harmonized CPTAC3 53f8a0e8-4f78-4a48-a1d2-03d1f0828cfc 4a897b8d92192d35fb4642bbed12c565 { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02143.RNA-Seq.genomic.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 1bd74da8-5a7a-4029-aded-2a0f1a36ddbb.rna_seq.genomic.gdc_realn.bam 11511448692 BAM genomic harmonized CPTAC3 6a34a942-bb3c-4363-9916-d4a72fe832a7 b9fa8109ce6baa803aaf176f8a173e1e { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor' } -C3N-02143.RNA-Seq.R1_L002.T C3N-02143 LUAD RNA-Seq tumor CPT0213230009 190607_UNC32-K00270_0179_BH75W2BBXY_GCACGGAC-GTCTCGCA_S7_L002_R1_001.fastq.gz 3542619521 FASTQ R1_L002 unaligned CPTAC3 9a85fb5a-6bb5-43c2-8ee4-6d1e8139a080 6d56298cf7a79f7a5afbf5eb95c2349f { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor' } -C3N-02143.RNA-Seq.R1_L004.A C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAATACAG-ATATTCAC_S12_L004_R1_001.fastq.gz 4520365189 FASTQ R1_L004 unaligned CPTAC3 c1b5ef04-f445-4b9c-9502-79dc3e160578 ca259288a91720a4887bf48d8f08b522 { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02143.RNA-Seq.R2_L002.T C3N-02143 LUAD RNA-Seq tumor CPT0213230009 190607_UNC32-K00270_0179_BH75W2BBXY_GCACGGAC-GTCTCGCA_S7_L002_R2_001.fastq.gz 4064404369 FASTQ R2_L002 unaligned CPTAC3 8f9ad4da-ea85-48cf-be30-ed1b51ebaefb 79a4ae00b0f41d3a3baf5ac28f8b1019 { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor' } -C3N-02143.RNA-Seq.R2_L004.A C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAATACAG-ATATTCAC_S12_L004_R2_001.fastq.gz 4686036450 FASTQ R2_L004 unaligned CPTAC3 5594487e-11bd-4e77-b933-5ce3d262567e 7cd68af51ae70a5e7e60c0b2365233d0 { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02143.RNA-Seq.transcriptome.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 13c005f1-4df7-49d5-be2d-b5f642dcb503.rna_seq.transcriptome.gdc_realn.bam 9533787700 BAM transcriptome harmonized CPTAC3 3645d7fd-db7d-45e4-9259-3f4f9cf5302b bc347a07e80c205361e081347a34d19e { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02143.RNA-Seq.transcriptome.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 1bd74da8-5a7a-4029-aded-2a0f1a36ddbb.rna_seq.transcriptome.gdc_realn.bam 7692056278 BAM transcriptome harmonized CPTAC3 1449b3ec-4d9b-4f23-bbad-49774c48a514 4aeb9a27e55da46b58f5dbb47520447f { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor' } +C3N-02143.RNA-Seq.chimeric.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 062e0489-aff1-4fcf-bcae-66e6de27ad30.rna_seq.chimeric.gdc_realn.bam 42362471 BAM chimeric harmonized CPTAC3 b50e8dc2-7066-4287-9693-548a66e4833f d46484613c2230d6296cac9464844776 { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02143.RNA-Seq.chimeric.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 ba839ea8-17a4-4fb8-bd6c-873c129b5d10.rna_seq.chimeric.gdc_realn.bam 25643779 BAM chimeric harmonized CPTAC3 89cc83ea-85a9-473c-9308-95316364f368 544a1eeb3261a989d712855eb7e6d298 { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor' } +C3N-02143.RNA-Seq.genomic.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 062e0489-aff1-4fcf-bcae-66e6de27ad30.rna_seq.genomic.gdc_realn.bam 10063332985 BAM genomic harmonized CPTAC3 ac5bb987-3757-4f4d-9e77-a3e0dda6fb5e 4df6c0ac4758e9eeb2adb9a850779d4a { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02143.RNA-Seq.genomic.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 ba839ea8-17a4-4fb8-bd6c-873c129b5d10.rna_seq.genomic.gdc_realn.bam 11512680211 BAM genomic harmonized CPTAC3 c353019a-3a23-4532-adc8-d3331d93fbd4 f741d65214dd446e525aed0b3be2f2cb { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor' } +C3N-02143.RNA-Seq.R1_L002.T C3N-02143 LUAD RNA-Seq tumor CPT0213230009 190607_UNC32-K00270_0179_BH75W2BBXY_GCACGGAC-GTCTCGCA_S7_L002_R1_001.fastq.gz 3542619521 FASTQ R1_L002 unaligned CPTAC3 9a85fb5a-6bb5-43c2-8ee4-6d1e8139a080 6d56298cf7a79f7a5afbf5eb95c2349f { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02143.RNA-Seq.R1_L004.A C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAATACAG-ATATTCAC_S12_L004_R1_001.fastq.gz 4520365189 FASTQ R1_L004 unaligned CPTAC3 c1b5ef04-f445-4b9c-9502-79dc3e160578 ca259288a91720a4887bf48d8f08b522 { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02143.RNA-Seq.R2_L002.T C3N-02143 LUAD RNA-Seq tumor CPT0213230009 190607_UNC32-K00270_0179_BH75W2BBXY_GCACGGAC-GTCTCGCA_S7_L002_R2_001.fastq.gz 4064404369 FASTQ R2_L002 unaligned CPTAC3 8f9ad4da-ea85-48cf-be30-ed1b51ebaefb 79a4ae00b0f41d3a3baf5ac28f8b1019 { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02143.RNA-Seq.R2_L004.A C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 190717_UNC31-K00269_0233_BH7HG5BBXY_TAATACAG-ATATTCAC_S12_L004_R2_001.fastq.gz 4686036450 FASTQ R2_L004 unaligned CPTAC3 5594487e-11bd-4e77-b933-5ce3d262567e 7cd68af51ae70a5e7e60c0b2365233d0 { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02143.RNA-Seq.transcriptome.A.hg38 C3N-02143 LUAD RNA-Seq tissue_normal CPT0213250009 062e0489-aff1-4fcf-bcae-66e6de27ad30.rna_seq.transcriptome.gdc_realn.bam 10860429996 BAM transcriptome harmonized CPTAC3 f0eb1d49-b049-41d8-9e4c-437f77159ee2 af02f9060117f3fa8ef5612be664f430 { 'aliquot_tag': 'ALQ_3787fb97', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02143.RNA-Seq.transcriptome.T.hg38 C3N-02143 LUAD RNA-Seq tumor CPT0213230009 ba839ea8-17a4-4fb8-bd6c-873c129b5d10.rna_seq.transcriptome.gdc_realn.bam 8593571291 BAM transcriptome harmonized CPTAC3 df2703e5-2296-4669-b617-783cb3bb69a3 8fc0a6b834234a1c5e554fba48c3e4f3 { 'aliquot_tag': 'ALQ_b8c70e37', 'gdc_sample_type': 'Primary Tumor' } C3N-02143.WGS.N C3N-02143 LUAD WGS blood_normal CPT0213330002 CPT0213330002.WholeGenome.RP-1303.bam 57404187699 BAM aligned CPTAC3 4da6d60c-7d39-45f3-b787-a1d97495281f c7bb6b50b838bdc8c7e31cc99ef3b52d { 'aliquot_tag': 'ALQ_e449041a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02143.WGS.N.hg38 C3N-02143 LUAD WGS blood_normal CPT0213330002 1fe77e66-a0db-4835-9ca3-811e8199e906_wgs_gdc_realn.bam 83482726053 BAM harmonized CPTAC3 56daee9a-072e-4060-91f4-88403cf18a5e 2af7a5a3a5c7a7c335cef50eb522667d { 'aliquot_tag': 'ALQ_e449041a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02143.WGS.T C3N-02143 LUAD WGS tumor CPT0213230006 CPT0213230006.WholeGenome.RP-1303.bam 69465345124 BAM aligned CPTAC3 c417af26-46dd-427a-8cdd-5a489111cf4c c6517bdd41404e17858019c8563f315f { 'aliquot_tag': 'ALQ_287813a6', 'gdc_sample_type': 'Primary Tumor' } @@ -29379,16 +31462,16 @@ C3N-02144.miRNA-Seq.A C3N-02144 LUAD miRNA-Seq tissue_normal CPT0213430009 19013 C3N-02144.miRNA-Seq.A.hg38 C3N-02144 LUAD miRNA-Seq tissue_normal CPT0213430009 3f357d5d-c2b0-4ade-b518-baa5487d573d_mirnaseq_gdc_realn.bam 284479151 BAM harmonized CPTAC3 7d1b0b4b-8a82-466e-a337-6e6448d0e10c 4c340d784ea6867ff65705892db08806 { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02144.miRNA-Seq.T C3N-02144 LUAD miRNA-Seq tumor CPT0213400006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGGCG_S34_L007_R1_001.unaln.bam 157050378 BAM unaligned CPTAC3 a7e6c91b-0be1-4932-be3a-af742b0de7b1 a0a244f616894d0336122c7cda5ea886 { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor' } C3N-02144.miRNA-Seq.T.hg38 C3N-02144 LUAD miRNA-Seq tumor CPT0213400006 ab2cad16-da9a-42cf-a735-c3792d89f43b_mirnaseq_gdc_realn.bam 169908057 BAM harmonized CPTAC3 3c01c951-0963-4730-a335-8d9b3e293c3a 8c3941591a7162ba62da836fe2afbeac { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02144.RNA-Seq.chimeric.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 65dfe4c5-d627-4c65-b927-ae674b4e7622.rna_seq.chimeric.gdc_realn.bam 38270455 BAM chimeric harmonized CPTAC3 a9b46db8-51f4-45af-9446-8858adecfc54 02c68d177deccd55abaf2a2d1b599da5 { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02144.RNA-Seq.chimeric.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 9b6fc7c5-2b74-47b6-ae5e-318c536a55a7.rna_seq.chimeric.gdc_realn.bam 44654969 BAM chimeric harmonized CPTAC3 d519888f-814c-454c-bf52-1578d7dd6b1e b8173f575d4d9a010d1977a4a099fa36 { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02144.RNA-Seq.genomic.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 65dfe4c5-d627-4c65-b927-ae674b4e7622.rna_seq.genomic.gdc_realn.bam 8369062965 BAM genomic harmonized CPTAC3 d8c5d69e-94a0-42ce-b44e-cab90695642f e7fc9d8808730309108b11d0c906d891 { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02144.RNA-Seq.genomic.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 9b6fc7c5-2b74-47b6-ae5e-318c536a55a7.rna_seq.genomic.gdc_realn.bam 7693280427 BAM genomic harmonized CPTAC3 a96bcf80-3330-4295-8cb5-9bf246efbacf 80cd1c1c07387522147a2aa3ca693b39 { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02144.RNA-Seq.R1_L002.T C3N-02144 LUAD RNA-Seq tumor CPT0213400006 190131_UNC32-K00270_0142_BH3LFYBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3484027388 FASTQ R1_L002 unaligned CPTAC3 5dea3bd7-2f8e-440c-810d-281806b7051b baf75b3fa82747f1d38a3f7c580b71e4 { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02144.RNA-Seq.R1_L003.A C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3543017372 FASTQ R1_L003 unaligned CPTAC3 39aef709-7338-42c2-9a5f-d5a7480416d2 565db775a5efff44092ac54fe2e020ff { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02144.RNA-Seq.R2_L002.T C3N-02144 LUAD RNA-Seq tumor CPT0213400006 190131_UNC32-K00270_0142_BH3LFYBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3766925002 FASTQ R2_L002 unaligned CPTAC3 faa18593-2dff-4a1a-8423-a381f05e86fd 069a27d1e50c911e5a9460055485f5d9 { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02144.RNA-Seq.R2_L003.A C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 3956840810 FASTQ R2_L003 unaligned CPTAC3 6e6d7a13-f59a-4443-a4fa-86fdaf9fac26 cdb92cd57f00c7e9cc185aeccc30c5dd { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02144.RNA-Seq.transcriptome.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 65dfe4c5-d627-4c65-b927-ae674b4e7622.rna_seq.transcriptome.gdc_realn.bam 8523119202 BAM transcriptome harmonized CPTAC3 668636e6-bfd3-481e-8678-ceae7a04b022 ad31311ac73019df568fab654ae73494 { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02144.RNA-Seq.transcriptome.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 9b6fc7c5-2b74-47b6-ae5e-318c536a55a7.rna_seq.transcriptome.gdc_realn.bam 8698284581 BAM transcriptome harmonized CPTAC3 6dcb0413-509d-4173-87f1-98e7a9ea53ac 82b70cad468c192b1557a056556f8014 { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02144.RNA-Seq.chimeric.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 6d84cac6-c2fb-43f9-a54e-159363e4a34f.rna_seq.chimeric.gdc_realn.bam 38255706 BAM chimeric harmonized CPTAC3 c5c254db-0f45-4c7c-8972-4b74a5eb8fd9 d5276d6958d82e2c4e3bfe5783378eb0 { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02144.RNA-Seq.chimeric.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 1d6a3105-dca4-4421-9717-6d3518e90d54.rna_seq.chimeric.gdc_realn.bam 44644956 BAM chimeric harmonized CPTAC3 358c5837-d72f-43ba-beef-2ac301a1ba06 1ff705ba6ba133bd35fdc9700a47c132 { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02144.RNA-Seq.genomic.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 6d84cac6-c2fb-43f9-a54e-159363e4a34f.rna_seq.genomic.gdc_realn.bam 8370147068 BAM genomic harmonized CPTAC3 8a8efd03-95f0-4843-a22d-0483ccc7eef4 594a2daef9c2dc785b572ffc2f98a9e4 { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02144.RNA-Seq.genomic.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 1d6a3105-dca4-4421-9717-6d3518e90d54.rna_seq.genomic.gdc_realn.bam 7694305409 BAM genomic harmonized CPTAC3 367ee2a9-4a24-45ec-831f-fbe24984b5c7 fc021668e15aacb2f087909fdb62f6c2 { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02144.RNA-Seq.R1_L002.T C3N-02144 LUAD RNA-Seq tumor CPT0213400006 190131_UNC32-K00270_0142_BH3LFYBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3484027388 FASTQ R1_L002 unaligned CPTAC3 5dea3bd7-2f8e-440c-810d-281806b7051b baf75b3fa82747f1d38a3f7c580b71e4 { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02144.RNA-Seq.R1_L003.A C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3543017372 FASTQ R1_L003 unaligned CPTAC3 39aef709-7338-42c2-9a5f-d5a7480416d2 565db775a5efff44092ac54fe2e020ff { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02144.RNA-Seq.R2_L002.T C3N-02144 LUAD RNA-Seq tumor CPT0213400006 190131_UNC32-K00270_0142_BH3LFYBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3766925002 FASTQ R2_L002 unaligned CPTAC3 faa18593-2dff-4a1a-8423-a381f05e86fd 069a27d1e50c911e5a9460055485f5d9 { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02144.RNA-Seq.R2_L003.A C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 190201_UNC31-K00269_0190_BH3LFKBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 3956840810 FASTQ R2_L003 unaligned CPTAC3 6e6d7a13-f59a-4443-a4fa-86fdaf9fac26 cdb92cd57f00c7e9cc185aeccc30c5dd { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02144.RNA-Seq.transcriptome.A.hg38 C3N-02144 LUAD RNA-Seq tissue_normal CPT0213430009 6d84cac6-c2fb-43f9-a54e-159363e4a34f.rna_seq.transcriptome.gdc_realn.bam 9600167629 BAM transcriptome harmonized CPTAC3 f48e24c9-eda8-48bf-84b5-a0e59aeb9c7d 052330b39551ae0f82c1c0ccff7eac0f { 'aliquot_tag': 'ALQ_6e9eed2a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02144.RNA-Seq.transcriptome.T.hg38 C3N-02144 LUAD RNA-Seq tumor CPT0213400006 1d6a3105-dca4-4421-9717-6d3518e90d54.rna_seq.transcriptome.gdc_realn.bam 9798540656 BAM transcriptome harmonized CPTAC3 877e89d0-7535-4177-acc7-dc8b67901e2a f921fa6571bf6578dbc634d6dd13e2cf { 'aliquot_tag': 'ALQ_b9818a6b', 'gdc_sample_type': 'Primary Tumor' } C3N-02144.WGS.A C3N-02144 LUAD WGS tissue_normal CPT0213430006 CPT0213430006.WholeGenome.RP-1303.bam 60026135486 BAM aligned CPTAC3 9e3aec60-f247-4e12-a652-643315f2a456 cb4168ff0329612eb256aa076950aa7c { 'aliquot_tag': 'ALQ_fe21f0bb', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02144.WGS.A.hg38 C3N-02144 LUAD WGS tissue_normal CPT0213430006 a12610f8-08ef-4ccf-8867-0b3e81a115cf_wgs_gdc_realn.bam 86874595021 BAM harmonized CPTAC3 c734e1f1-fd9e-4f86-9224-edc90e726f4d b3e7786a28355a94ee3383a23006cc19 { 'aliquot_tag': 'ALQ_fe21f0bb', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02144.WGS.N C3N-02144 LUAD WGS blood_normal CPT0213510002 CPT0213510002.WholeGenome.RP-1303.bam 58616982436 BAM aligned CPTAC3 4c1ffb4a-99be-4b2e-8940-cc59cee822e6 7fcd27635033273acb4ec494f7cbe9f8 { 'aliquot_tag': 'ALQ_48d0b467', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29412,11 +31495,11 @@ C3N-02145.miRNA-Seq.T.hg38 C3N-02145 LUAD miRNA-Seq tumor CPT0118570009 e6f04a8d C3N-02145.RNA-Seq.chimeric.A.hg38 C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 8e061784-782d-4c3e-a67c-8eacced28b1f.rna_seq.chimeric.gdc_realn.bam 132927427 BAM chimeric harmonized CPTAC3 1e9b9880-7fa9-41bc-b714-8012b6d9fdc1 ed6c4c1efa8dca058545958777098ba1 { 'aliquot_tag': 'ALQ_cfc3435f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02145.RNA-Seq.chimeric.T.hg38 C3N-02145 LUAD RNA-Seq tumor CPT0118570009 b650ad4a-1ba7-41eb-b6bb-9ba630694b5e.rna_seq.chimeric.gdc_realn.bam 142856390 BAM chimeric harmonized CPTAC3 9c319a4b-e6d5-4bb7-bbcf-5bb5fc70e9de 0e9743810977e869b5ae79339646bbf6 { 'aliquot_tag': 'ALQ_6bc8f070', 'gdc_sample_type': 'Primary Tumor' } C3N-02145.RNA-Seq.genomic.A.hg38 C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 8e061784-782d-4c3e-a67c-8eacced28b1f.rna_seq.genomic.gdc_realn.bam 8367415124 BAM genomic harmonized CPTAC3 9bfae709-1420-4f7d-84fa-794972ddd474 ef0ff143688eb80274d706d76f391eee { 'aliquot_tag': 'ALQ_cfc3435f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02145.RNA-Seq.genomic.T.hg38 C3N-02145 LUAD RNA-Seq tumor CPT0118570009 b650ad4a-1ba7-41eb-b6bb-9ba630694b5e.rna_seq.genomic.gdc_realn.bam 10460715105 BAM genomic harmonized CPTAC3 0b7ad1f0-44ee-43ce-b5c5-36394428db8f 64686f7b9de36cdbd387f23c974c061f { 'aliquot_tag': 'ALQ_6bc8f070', 'gdc_sample_type': 'Primary Tumor' } -C3N-02145.RNA-Seq.R1_L007.A C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGAAA_S22_L007_R1_001.fastq.gz 4007829372 FASTQ R1_L007 unaligned CPTAC3 849ef78b-5cda-4554-a758-d07240117226 39153f606c5c6e562d9adc658e5c8913 { 'aliquot_tag': 'ALQ_cfc3435f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02145.RNA-Seq.R1_L007.T C3N-02145 LUAD RNA-Seq tumor CPT0118570009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4560885545 FASTQ R1_L007 unaligned CPTAC3 560ee59e-a8eb-4b33-a3c4-e80c56e012f3 569fd6cdca5de14c2eda92757c1bc00a { 'aliquot_tag': 'ALQ_6bc8f070', 'gdc_sample_type': 'Primary Tumor' } -C3N-02145.RNA-Seq.R2_L007.A C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGAAA_S22_L007_R2_001.fastq.gz 4151806539 FASTQ R2_L007 unaligned CPTAC3 c2cf65f7-c9b9-4452-85e9-c2199358cae2 5227b35b6915a792ddb6c6789f5b5f33 { 'aliquot_tag': 'ALQ_cfc3435f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02145.RNA-Seq.R2_L007.T C3N-02145 LUAD RNA-Seq tumor CPT0118570009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4997975061 FASTQ R2_L007 unaligned CPTAC3 67bb9f61-dd97-4785-bb1a-8f046fe57cae 80127fd0425ddc8daa859a8e926999ca { 'aliquot_tag': 'ALQ_6bc8f070', 'gdc_sample_type': 'Primary Tumor' } +C3N-02145.RNA-Seq.genomic.T.hg38 C3N-02145 LUAD RNA-Seq tumor CPT0118570009 b650ad4a-1ba7-41eb-b6bb-9ba630694b5e.rna_seq.genomic.gdc_realn.bam 10460715105 BAM genomic harmonized CPTAC3 30fe7a9f-55b5-4f3b-95ea-fa2ad5ca2054 64686f7b9de36cdbd387f23c974c061f { 'aliquot_tag': 'ALQ_6bc8f070', 'gdc_sample_type': 'Primary Tumor' } +C3N-02145.RNA-Seq.R1_L007.A C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGAAA_S22_L007_R1_001.fastq.gz 4007829372 FASTQ R1_L007 unaligned CPTAC3 849ef78b-5cda-4554-a758-d07240117226 39153f606c5c6e562d9adc658e5c8913 { 'aliquot_tag': 'ALQ_cfc3435f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02145.RNA-Seq.R1_L007.T C3N-02145 LUAD RNA-Seq tumor CPT0118570009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4560885545 FASTQ R1_L007 unaligned CPTAC3 560ee59e-a8eb-4b33-a3c4-e80c56e012f3 569fd6cdca5de14c2eda92757c1bc00a { 'aliquot_tag': 'ALQ_6bc8f070', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02145.RNA-Seq.R2_L007.A C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGAAA_S22_L007_R2_001.fastq.gz 4151806539 FASTQ R2_L007 unaligned CPTAC3 c2cf65f7-c9b9-4452-85e9-c2199358cae2 5227b35b6915a792ddb6c6789f5b5f33 { 'aliquot_tag': 'ALQ_cfc3435f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02145.RNA-Seq.R2_L007.T C3N-02145 LUAD RNA-Seq tumor CPT0118570009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4997975061 FASTQ R2_L007 unaligned CPTAC3 67bb9f61-dd97-4785-bb1a-8f046fe57cae 80127fd0425ddc8daa859a8e926999ca { 'aliquot_tag': 'ALQ_6bc8f070', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02145.RNA-Seq.transcriptome.A.hg38 C3N-02145 LUAD RNA-Seq tissue_normal CPT0118600006 8e061784-782d-4c3e-a67c-8eacced28b1f.rna_seq.transcriptome.gdc_realn.bam 10503889716 BAM transcriptome harmonized CPTAC3 58a9dd9d-4095-433d-a916-9630b6ff9a56 62fa376b17ba52483ddedb829ca48a25 { 'aliquot_tag': 'ALQ_cfc3435f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02145.RNA-Seq.transcriptome.T.hg38 C3N-02145 LUAD RNA-Seq tumor CPT0118570009 b650ad4a-1ba7-41eb-b6bb-9ba630694b5e.rna_seq.transcriptome.gdc_realn.bam 11829743851 BAM transcriptome harmonized CPTAC3 ea66a677-de0e-4403-86be-0ae5402f67f1 4b4433c7daf58f939bbb480a52528968 { 'aliquot_tag': 'ALQ_6bc8f070', 'gdc_sample_type': 'Primary Tumor' } C3N-02145.WGS.A C3N-02145 LUAD WGS tissue_normal CPT0118600008 CPT0118600008.WholeGenome.RP-1303.bam 60454307716 BAM aligned CPTAC3 1c342b77-1ccd-47d6-9d5e-c9bb57687a35 e69a71e108e9039ed4685e2cc4c50081 { 'aliquot_tag': 'ALQ_287b6e58', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -29439,16 +31522,16 @@ C3N-02146.miRNA-Seq.A C3N-02146 LUAD miRNA-Seq tissue_normal CPT0213610009 19013 C3N-02146.miRNA-Seq.A.hg38 C3N-02146 LUAD miRNA-Seq tissue_normal CPT0213610009 da7a2f39-e64c-4fbb-890a-f2376b19546e_mirnaseq_gdc_realn.bam 302400847 BAM harmonized CPTAC3 58b43116-eef1-46bf-b969-6f6c067611ca 6219c4a65b2a5e431d3d2ee3e8f7febf { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02146.miRNA-Seq.T C3N-02146 LUAD miRNA-Seq tumor CPT0213600006 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGAGC_S29_L007_R1_001.unaln.bam 212464348 BAM unaligned CPTAC3 a7ff1a54-1213-4d89-9fb4-17811df07cac d54dabea2c392edf391400162b6c1d16 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor' } C3N-02146.miRNA-Seq.T.hg38 C3N-02146 LUAD miRNA-Seq tumor CPT0213600006 b11aff8f-8275-4e00-bf29-0afcd85a2efe_mirnaseq_gdc_realn.bam 229393465 BAM harmonized CPTAC3 030a362b-9c18-467a-a0d7-c24489b1a581 c9871d24501618a030add714afb4a047 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor' } -C3N-02146.RNA-Seq.chimeric.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 7429210d-b18a-46cc-9528-77fdf7901f4f.rna_seq.chimeric.gdc_realn.bam 40888666 BAM chimeric harmonized CPTAC3 72b5b291-7dda-4147-9076-fabe0d2d4976 11d607ffb8fafe0e70e6362d71abb22e { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02146.RNA-Seq.chimeric.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 43179153-7ac9-4cc8-b703-5011369ed8ea.rna_seq.chimeric.gdc_realn.bam 50690018 BAM chimeric harmonized CPTAC3 a8857e49-87b3-49fb-83cc-75e15b7ef611 476d71e3843b18cf0696b2c9dd0fc30a { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor' } -C3N-02146.RNA-Seq.genomic.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 7429210d-b18a-46cc-9528-77fdf7901f4f.rna_seq.genomic.gdc_realn.bam 9977045611 BAM genomic harmonized CPTAC3 9a961904-9c96-4b1e-8e91-d8ce58ff90cb ba72ec15cc74aae7b8cddd332ac8f928 { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02146.RNA-Seq.genomic.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 43179153-7ac9-4cc8-b703-5011369ed8ea.rna_seq.genomic.gdc_realn.bam 9501338557 BAM genomic harmonized CPTAC3 243343eb-9676-48ad-9a9a-be0ca46fdbb8 9de73bd360a4db9539cd252a22636782 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor' } -C3N-02146.RNA-Seq.R1_L002.A C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L002_R1_001.fastq.gz 4613353599 FASTQ R1_L002 unaligned CPTAC3 9824d156-b308-47e5-819f-b8eef22edab5 259b460bf941125ad9735c14727bbd0f { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02146.RNA-Seq.R1_L008.T C3N-02146 LUAD RNA-Seq tumor CPT0213600006 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L008_R1_001.fastq.gz 3957059737 FASTQ R1_L008 unaligned CPTAC3 5d4d4ccc-ce37-4363-84a2-6558a2c7b796 a0e869ad38becd4ba3f7b1f95deeac11 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor' } -C3N-02146.RNA-Seq.R2_L002.A C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L002_R2_001.fastq.gz 4686371419 FASTQ R2_L002 unaligned CPTAC3 9bdcac28-c86c-4ff3-9711-6c8a95f88051 b5bc8bf421ea544d69ce1f5c58a04774 { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02146.RNA-Seq.R2_L008.T C3N-02146 LUAD RNA-Seq tumor CPT0213600006 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L008_R2_001.fastq.gz 4386323282 FASTQ R2_L008 unaligned CPTAC3 5465f0fb-3df4-47c6-8690-20a5f71e9b0a 57036851d10f83f21e0aa39f2900d5d0 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor' } -C3N-02146.RNA-Seq.transcriptome.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 7429210d-b18a-46cc-9528-77fdf7901f4f.rna_seq.transcriptome.gdc_realn.bam 10127883431 BAM transcriptome harmonized CPTAC3 5bd0e860-9153-4a35-9a1f-0e1199d244b4 394acd05fa6e20b6c2b46918778c03a5 { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02146.RNA-Seq.transcriptome.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 43179153-7ac9-4cc8-b703-5011369ed8ea.rna_seq.transcriptome.gdc_realn.bam 7939552210 BAM transcriptome harmonized CPTAC3 976ad79e-bca2-428c-9ec8-5efc02900d2e 6e791dce45a5a3398285c0c510ac71c9 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor' } +C3N-02146.RNA-Seq.chimeric.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 e393396b-ac51-4a3c-953e-c675943bccef.rna_seq.chimeric.gdc_realn.bam 40885283 BAM chimeric harmonized CPTAC3 d8bc1b3e-ec41-44b0-bc59-3c99402b9f95 7d5333ccbba7dd9d530f48dc42f271cc { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02146.RNA-Seq.chimeric.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 8583e22d-3d94-4185-82b0-7659c09fc51a.rna_seq.chimeric.gdc_realn.bam 50710805 BAM chimeric harmonized CPTAC3 5593ef8f-1d2c-4305-9fc9-7b6ea6d52704 d5a6956953bc332875e681a09afc9171 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor' } +C3N-02146.RNA-Seq.genomic.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 e393396b-ac51-4a3c-953e-c675943bccef.rna_seq.genomic.gdc_realn.bam 9978139725 BAM genomic harmonized CPTAC3 ff1f7439-fb2e-4d1d-876d-9f84f14aaf4b d5646b2ee504e7d687970f2753d3aa7b { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02146.RNA-Seq.genomic.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 8583e22d-3d94-4185-82b0-7659c09fc51a.rna_seq.genomic.gdc_realn.bam 9508193362 BAM genomic harmonized CPTAC3 72c2c989-022f-4bef-a6b9-d78382137efa 5157557512cf49c3d7cc08616c208001 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor' } +C3N-02146.RNA-Seq.R1_L002.A C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L002_R1_001.fastq.gz 4613353599 FASTQ R1_L002 unaligned CPTAC3 9824d156-b308-47e5-819f-b8eef22edab5 259b460bf941125ad9735c14727bbd0f { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02146.RNA-Seq.R1_L008.T C3N-02146 LUAD RNA-Seq tumor CPT0213600006 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L008_R1_001.fastq.gz 3957059737 FASTQ R1_L008 unaligned CPTAC3 5d4d4ccc-ce37-4363-84a2-6558a2c7b796 a0e869ad38becd4ba3f7b1f95deeac11 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02146.RNA-Seq.R2_L002.A C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L002_R2_001.fastq.gz 4686371419 FASTQ R2_L002 unaligned CPTAC3 9bdcac28-c86c-4ff3-9711-6c8a95f88051 b5bc8bf421ea544d69ce1f5c58a04774 { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02146.RNA-Seq.R2_L008.T C3N-02146 LUAD RNA-Seq tumor CPT0213600006 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L008_R2_001.fastq.gz 4386323282 FASTQ R2_L008 unaligned CPTAC3 5465f0fb-3df4-47c6-8690-20a5f71e9b0a 57036851d10f83f21e0aa39f2900d5d0 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02146.RNA-Seq.transcriptome.A.hg38 C3N-02146 LUAD RNA-Seq tissue_normal CPT0213610009 e393396b-ac51-4a3c-953e-c675943bccef.rna_seq.transcriptome.gdc_realn.bam 11442920258 BAM transcriptome harmonized CPTAC3 8fe0ee27-de8a-4a0e-8632-b09d5189ee7e c55674a3c1de250be63b22b39ed759e1 { 'aliquot_tag': 'ALQ_59961f41', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02146.RNA-Seq.transcriptome.T.hg38 C3N-02146 LUAD RNA-Seq tumor CPT0213600006 8583e22d-3d94-4185-82b0-7659c09fc51a.rna_seq.transcriptome.gdc_realn.bam 8873871717 BAM transcriptome harmonized CPTAC3 4b49fa4c-f2c9-4f00-8b79-9c6914719807 1f96dd31a3d6e3e996da62fb48a15213 { 'aliquot_tag': 'ALQ_f4492b60', 'gdc_sample_type': 'Primary Tumor' } C3N-02146.WGS.A C3N-02146 LUAD WGS tissue_normal CPT0213610006 CPT0213610006.WholeGenome.RP-1303.bam 58227869637 BAM aligned CPTAC3 c3a1d2b7-d344-4c44-8b33-f7f2bc3bcdcb 36d10cc8b9094937ebca549549419dec { 'aliquot_tag': 'ALQ_c92902d0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02146.WGS.A.hg38 C3N-02146 LUAD WGS tissue_normal CPT0213610006 646adfc3-9a79-48bd-b65d-b7e3b44901e7_wgs_gdc_realn.bam 85979883907 BAM harmonized CPTAC3 69552701-8340-477e-b652-15fad0989430 ccec0d66301ace893300f4f2cf0e9d56 { 'aliquot_tag': 'ALQ_c92902d0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02146.WGS.N C3N-02146 LUAD WGS blood_normal CPT0213690002 CPT0213690002.WholeGenome.RP-1303.bam 57302327942 BAM aligned CPTAC3 56af6184-5441-4670-9332-86261208b195 4534b173867321363d963b0294de7182 { 'aliquot_tag': 'ALQ_fe348d08', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29472,11 +31555,11 @@ C3N-02149.miRNA-Seq.T.hg38 C3N-02149 LUAD miRNA-Seq tumor CPT0118620009 00766340 C3N-02149.RNA-Seq.chimeric.A.hg38 C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 6cc2f017-7ac6-47ec-ad3f-6a8037aedb80.rna_seq.chimeric.gdc_realn.bam 141987760 BAM chimeric harmonized CPTAC3 a01a6717-2b8b-41c8-9768-86563fa00f21 00a6e076c6cd8a9f63ca41ec3b28d0ce { 'aliquot_tag': 'ALQ_723cc2f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02149.RNA-Seq.chimeric.T.hg38 C3N-02149 LUAD RNA-Seq tumor CPT0118620009 ee1c9749-c3f9-46a9-aa38-6d684e201e67.rna_seq.chimeric.gdc_realn.bam 112408969 BAM chimeric harmonized CPTAC3 14228ccd-572e-4eb2-a3ab-e067b7b7b5e8 46f387a7d7be181cd8e5ea5a6a4a8823 { 'aliquot_tag': 'ALQ_25bc0dae', 'gdc_sample_type': 'Primary Tumor' } C3N-02149.RNA-Seq.genomic.A.hg38 C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 6cc2f017-7ac6-47ec-ad3f-6a8037aedb80.rna_seq.genomic.gdc_realn.bam 9108971482 BAM genomic harmonized CPTAC3 65610ae5-480c-4cec-a39d-b03d29c2ffd4 48899e2428344c6bcebb2426e4ba2e9b { 'aliquot_tag': 'ALQ_723cc2f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02149.RNA-Seq.genomic.T.hg38 C3N-02149 LUAD RNA-Seq tumor CPT0118620009 ee1c9749-c3f9-46a9-aa38-6d684e201e67.rna_seq.genomic.gdc_realn.bam 8587413235 BAM genomic harmonized CPTAC3 d40499e3-b0ca-4e86-a7af-7fdb2b7f0d8d 1c7a5b296ec84d7ac03bcfb8cc707d1b { 'aliquot_tag': 'ALQ_25bc0dae', 'gdc_sample_type': 'Primary Tumor' } -C3N-02149.RNA-Seq.R1_L004.A C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGGCC_S13_L004_R1_001.fastq.gz 4366895728 FASTQ R1_L004 unaligned CPTAC3 12929715-f6fc-463c-9c52-14611d4204e2 2d5ee10fe9e9719d39fdb5fc15d4eb57 { 'aliquot_tag': 'ALQ_723cc2f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02149.RNA-Seq.R1_L007.T C3N-02149 LUAD RNA-Seq tumor CPT0118620009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3631172744 FASTQ R1_L007 unaligned CPTAC3 fa21ff7c-cb3a-4bcd-ac39-b9a69f09f865 88e272b58da7d8e0bb146da619a0cdd2 { 'aliquot_tag': 'ALQ_25bc0dae', 'gdc_sample_type': 'Primary Tumor' } -C3N-02149.RNA-Seq.R2_L004.A C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGGCC_S13_L004_R2_001.fastq.gz 4871950739 FASTQ R2_L004 unaligned CPTAC3 bebb0111-48c4-448d-ac99-487b825baf58 cd707574ef86c518f50c2bc74d28b68c { 'aliquot_tag': 'ALQ_723cc2f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02149.RNA-Seq.R2_L007.T C3N-02149 LUAD RNA-Seq tumor CPT0118620009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 4023468920 FASTQ R2_L007 unaligned CPTAC3 d6193ba0-a0b7-482a-aa76-ab2a9656107b d0c228b6a5ec820825356c19a2c22f4e { 'aliquot_tag': 'ALQ_25bc0dae', 'gdc_sample_type': 'Primary Tumor' } +C3N-02149.RNA-Seq.genomic.T.hg38 C3N-02149 LUAD RNA-Seq tumor CPT0118620009 ee1c9749-c3f9-46a9-aa38-6d684e201e67.rna_seq.genomic.gdc_realn.bam 8587413235 BAM genomic harmonized CPTAC3 2e3fcf51-0d25-4e50-86fb-9c21d965e572 1c7a5b296ec84d7ac03bcfb8cc707d1b { 'aliquot_tag': 'ALQ_25bc0dae', 'gdc_sample_type': 'Primary Tumor' } +C3N-02149.RNA-Seq.R1_L004.A C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGGCC_S13_L004_R1_001.fastq.gz 4366895728 FASTQ R1_L004 unaligned CPTAC3 12929715-f6fc-463c-9c52-14611d4204e2 2d5ee10fe9e9719d39fdb5fc15d4eb57 { 'aliquot_tag': 'ALQ_723cc2f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02149.RNA-Seq.R1_L007.T C3N-02149 LUAD RNA-Seq tumor CPT0118620009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3631172744 FASTQ R1_L007 unaligned CPTAC3 fa21ff7c-cb3a-4bcd-ac39-b9a69f09f865 88e272b58da7d8e0bb146da619a0cdd2 { 'aliquot_tag': 'ALQ_25bc0dae', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02149.RNA-Seq.R2_L004.A C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 180109_UNC31-K00269_0107_AHNHY2BBXX_GTGGCC_S13_L004_R2_001.fastq.gz 4871950739 FASTQ R2_L004 unaligned CPTAC3 bebb0111-48c4-448d-ac99-487b825baf58 cd707574ef86c518f50c2bc74d28b68c { 'aliquot_tag': 'ALQ_723cc2f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02149.RNA-Seq.R2_L007.T C3N-02149 LUAD RNA-Seq tumor CPT0118620009 171116_UNC31-K00269_0093_BHMFKJBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 4023468920 FASTQ R2_L007 unaligned CPTAC3 d6193ba0-a0b7-482a-aa76-ab2a9656107b d0c228b6a5ec820825356c19a2c22f4e { 'aliquot_tag': 'ALQ_25bc0dae', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02149.RNA-Seq.transcriptome.A.hg38 C3N-02149 LUAD RNA-Seq tissue_normal CPT0118650006 6cc2f017-7ac6-47ec-ad3f-6a8037aedb80.rna_seq.transcriptome.gdc_realn.bam 12344189659 BAM transcriptome harmonized CPTAC3 be34e592-f8fb-4b3b-bc5e-e31ee6d602f2 009f7bf42b47ee74b89380b0cb1a634c { 'aliquot_tag': 'ALQ_723cc2f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02149.RNA-Seq.transcriptome.T.hg38 C3N-02149 LUAD RNA-Seq tumor CPT0118620009 ee1c9749-c3f9-46a9-aa38-6d684e201e67.rna_seq.transcriptome.gdc_realn.bam 9837903706 BAM transcriptome harmonized CPTAC3 eeec4588-c87d-4821-b2ea-08cc94342c78 6f02edc45ad1dfcfbf4d095b71ebeffe { 'aliquot_tag': 'ALQ_25bc0dae', 'gdc_sample_type': 'Primary Tumor' } C3N-02149.WGS.A C3N-02149 LUAD WGS tissue_normal CPT0118650009 CPT0118650009.WholeGenome.RP-1303.bam 63484893208 BAM aligned CPTAC3 6bf5cb45-a82b-4c7f-9bd6-3b08ccf8798e 41761a34cb82ae82b53bcba1f06620a9 { 'aliquot_tag': 'ALQ_979cd1be', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -29499,16 +31582,16 @@ C3N-02150.miRNA-Seq.A C3N-02150 LUAD miRNA-Seq tissue_normal CPT0118710006 18110 C3N-02150.miRNA-Seq.A.hg38 C3N-02150 LUAD miRNA-Seq tissue_normal CPT0118710006 0d27d530-2d19-4927-baf1-209c14caeaea_mirnaseq_gdc_realn.bam 230714513 BAM harmonized CPTAC3 a390c88f-65ec-497e-82cd-44d819f12c2a a4bdcea5ef33cfdd7a05e3507ce5baf5 { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02150.miRNA-Seq.T C3N-02150 LUAD miRNA-Seq tumor CPT0118700009 181119_UNC31-K00269_0165_AH27WCBBXY_TACAGC_S19_L004_R1_001.unaln.bam 252409691 BAM unaligned CPTAC3 4c39c0e7-4a5a-4b23-9d09-377b77bcbbc3 c8f116479c59d2755d7568cb0ee65b1c { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor' } C3N-02150.miRNA-Seq.T.hg38 C3N-02150 LUAD miRNA-Seq tumor CPT0118700009 f873c66e-5aaf-4ff5-862a-62b09ce276e6_mirnaseq_gdc_realn.bam 270204599 BAM harmonized CPTAC3 7051a252-d974-406c-af88-a6cac63fc873 b69e38258b8dc1d4ba79e0801eb56a7e { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02150.RNA-Seq.chimeric.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 959c90fe-8247-4e41-8e4a-18952309c319.rna_seq.chimeric.gdc_realn.bam 66202325 BAM chimeric harmonized CPTAC3 a9d4b9c3-7ad8-4345-8e51-795b74aa4302 692a99ad02cb1531387f417c4d77b685 { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02150.RNA-Seq.chimeric.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 fea196ac-b08a-42c9-a9ca-18128ac0850e.rna_seq.chimeric.gdc_realn.bam 126654195 BAM chimeric harmonized CPTAC3 f4ae8370-4dc0-4018-babe-37eca3924123 a079954addaf2dce468dbb23f2e89b6c { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02150.RNA-Seq.genomic.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 959c90fe-8247-4e41-8e4a-18952309c319.rna_seq.genomic.gdc_realn.bam 7875668205 BAM genomic harmonized CPTAC3 5118ec5f-a95a-4ae4-8e78-038288f7fc16 ad1ebbef471b50c87f75d6393915fced { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02150.RNA-Seq.genomic.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 fea196ac-b08a-42c9-a9ca-18128ac0850e.rna_seq.genomic.gdc_realn.bam 8467674537 BAM genomic harmonized CPTAC3 b7d8d0b4-a3b7-485e-8e18-036c79ce05a0 408286a782ffe6677013eac3589bd855 { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02150.RNA-Seq.R1_L006.A C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 180313_UNC32-K00270_0085_BHT2MGBBXX_ACTGAT_S34_L006_R1_001.fastq.gz 4211755416 FASTQ R1_L006 unaligned CPTAC3 022035d9-42be-4313-b98b-f2645f051afb b659c5bdd51cb5ac237c2c9f61b92acd { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02150.RNA-Seq.R1_L006.T C3N-02150 LUAD RNA-Seq tumor CPT0118700009 171116_UNC31-K00269_0093_BHMFKJBBXX_CGTACG_S22_L006_R1_001.fastq.gz 3841420216 FASTQ R1_L006 unaligned CPTAC3 39b210fe-d49c-454e-acc2-5136184d18a4 e98c3f598640cd1cc980ff8bfe03e276 { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02150.RNA-Seq.R2_L006.A C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 180313_UNC32-K00270_0085_BHT2MGBBXX_ACTGAT_S34_L006_R2_001.fastq.gz 4576581981 FASTQ R2_L006 unaligned CPTAC3 150222e9-64f1-4230-b072-c8d7182a6660 b912c0a7fc7d809b2d375ab934bbc7d5 { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02150.RNA-Seq.R2_L006.T C3N-02150 LUAD RNA-Seq tumor CPT0118700009 171116_UNC31-K00269_0093_BHMFKJBBXX_CGTACG_S22_L006_R2_001.fastq.gz 4336286051 FASTQ R2_L006 unaligned CPTAC3 7e4d06e2-8d42-488d-aa53-a9801189552f 81b179c127d8f526893eb9a56a7f6e29 { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02150.RNA-Seq.transcriptome.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 959c90fe-8247-4e41-8e4a-18952309c319.rna_seq.transcriptome.gdc_realn.bam 9492038096 BAM transcriptome harmonized CPTAC3 9a2542eb-bf45-4587-9686-11100bd4425f 182ec02a339da4964c92506e2917c4b6 { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02150.RNA-Seq.transcriptome.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 fea196ac-b08a-42c9-a9ca-18128ac0850e.rna_seq.transcriptome.gdc_realn.bam 10386865394 BAM transcriptome harmonized CPTAC3 0d5aedab-e45e-40be-a843-9f6e0687406f f99754d04f034214f0e74e83cd05a871 { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02150.RNA-Seq.chimeric.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 e64ff57d-0034-49e6-b0fd-bc70425aa047.rna_seq.chimeric.gdc_realn.bam 66174492 BAM chimeric harmonized CPTAC3 58a9f5ed-7c1f-4237-8755-a6030a7e4f72 8ac8c496124fa72aa332c0a5fb62c43d { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02150.RNA-Seq.chimeric.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 a9cfc5cd-29ea-43ca-81a8-3a2b8f467cef.rna_seq.chimeric.gdc_realn.bam 126678513 BAM chimeric harmonized CPTAC3 aaa5969e-f85d-44b7-b9d9-68c3c3ec6eb7 f54d0925122b4d413c43208f06a41a16 { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02150.RNA-Seq.genomic.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 e64ff57d-0034-49e6-b0fd-bc70425aa047.rna_seq.genomic.gdc_realn.bam 7877200058 BAM genomic harmonized CPTAC3 f6b9d8d0-2da9-43c4-9536-d46a3a7ccd53 2aabf91638c551b36f984e66e9dee43f { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02150.RNA-Seq.genomic.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 a9cfc5cd-29ea-43ca-81a8-3a2b8f467cef.rna_seq.genomic.gdc_realn.bam 8469154808 BAM genomic harmonized CPTAC3 2a646780-a2f1-49c6-9210-8fb53927707b d808119858ee8ac1fee8157c3121aeb8 { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02150.RNA-Seq.R1_L006.A C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 180313_UNC32-K00270_0085_BHT2MGBBXX_ACTGAT_S34_L006_R1_001.fastq.gz 4211755416 FASTQ R1_L006 unaligned CPTAC3 022035d9-42be-4313-b98b-f2645f051afb b659c5bdd51cb5ac237c2c9f61b92acd { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02150.RNA-Seq.R1_L006.T C3N-02150 LUAD RNA-Seq tumor CPT0118700009 171116_UNC31-K00269_0093_BHMFKJBBXX_CGTACG_S22_L006_R1_001.fastq.gz 3841420216 FASTQ R1_L006 unaligned CPTAC3 39b210fe-d49c-454e-acc2-5136184d18a4 e98c3f598640cd1cc980ff8bfe03e276 { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02150.RNA-Seq.R2_L006.A C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 180313_UNC32-K00270_0085_BHT2MGBBXX_ACTGAT_S34_L006_R2_001.fastq.gz 4576581981 FASTQ R2_L006 unaligned CPTAC3 150222e9-64f1-4230-b072-c8d7182a6660 b912c0a7fc7d809b2d375ab934bbc7d5 { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02150.RNA-Seq.R2_L006.T C3N-02150 LUAD RNA-Seq tumor CPT0118700009 171116_UNC31-K00269_0093_BHMFKJBBXX_CGTACG_S22_L006_R2_001.fastq.gz 4336286051 FASTQ R2_L006 unaligned CPTAC3 7e4d06e2-8d42-488d-aa53-a9801189552f 81b179c127d8f526893eb9a56a7f6e29 { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02150.RNA-Seq.transcriptome.A.hg38 C3N-02150 LUAD RNA-Seq tissue_normal CPT0118710006 e64ff57d-0034-49e6-b0fd-bc70425aa047.rna_seq.transcriptome.gdc_realn.bam 10808719427 BAM transcriptome harmonized CPTAC3 a2806193-43f5-4f3a-af4e-4c1e0671a3b4 58f0187a075742ece35f6852d50d71cd { 'aliquot_tag': 'ALQ_39ffb94a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02150.RNA-Seq.transcriptome.T.hg38 C3N-02150 LUAD RNA-Seq tumor CPT0118700009 a9cfc5cd-29ea-43ca-81a8-3a2b8f467cef.rna_seq.transcriptome.gdc_realn.bam 11573924570 BAM transcriptome harmonized CPTAC3 d2c73c31-5bfd-4de2-aefc-6cc4dd22759d f98b20d6b60212889fcf3ef33c9b4e9d { 'aliquot_tag': 'ALQ_94208d6b', 'gdc_sample_type': 'Primary Tumor' } C3N-02150.WGS.A C3N-02150 LUAD WGS tissue_normal CPT0118710009 CPT0118710009.WholeGenome.RP-1303.bam 72269981785 BAM aligned CPTAC3 2b55fcb0-32a5-48e0-9063-68eb1c8821c5 571734d29766f8b1e960b50bbbd6f38e { 'aliquot_tag': 'ALQ_a940a4db', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02150.WGS.A.hg38 C3N-02150 LUAD WGS tissue_normal CPT0118710009 90f70141-a933-4a7f-8dcf-d201bbb20119_wgs_gdc_realn.bam 104660057999 BAM harmonized CPTAC3 8b9e546e-c39b-40f7-820a-02a5febe8fec 11796c22a2cc678d566b863202823515 { 'aliquot_tag': 'ALQ_a940a4db', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02150.WGS.N C3N-02150 LUAD WGS blood_normal CPT0119930002 CPT0119930002.WholeGenome.RP-1303.bam 57139921267 BAM aligned CPTAC3 66664976-00c8-4bbe-841e-f939a0b24902 7bb77f26beb6dcc62f1c787ed3e1e3e5 { 'aliquot_tag': 'ALQ_d82f44f7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29529,16 +31612,16 @@ C3N-02152.miRNA-Seq.A C3N-02152 LUAD miRNA-Seq tissue_normal CPT0213790010 19071 C3N-02152.miRNA-Seq.A.hg38 C3N-02152 LUAD miRNA-Seq tissue_normal CPT0213790010 647e3ef5-fe44-4936-bf8e-3363f257299a_mirnaseq_gdc_realn.bam 245052321 BAM harmonized CPTAC3 47506536-55c4-4a6a-8b72-cf2138b54c67 b51a700c055736522590a48e1d836dc0 { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02152.miRNA-Seq.T C3N-02152 LUAD miRNA-Seq tumor CPT0213780010 190828_UNC32-K00270_0200_BH7GVJBBXY_AGTCAA_S140_L008_R1_001.unaln.bam 418453860 BAM unaligned CPTAC3 61567e60-d4eb-4604-8952-0a508e5aa469 867276273d8c47c4d617cb7a482290e1 { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor' } C3N-02152.miRNA-Seq.T.hg38 C3N-02152 LUAD miRNA-Seq tumor CPT0213780010 cb904d55-f0c1-44c5-beef-f8ce5ce41b47_mirnaseq_gdc_realn.bam 451279215 BAM harmonized CPTAC3 ddd10449-97da-4927-80f9-e4397558f3a3 fdf6dc0c9d3b1b206516bf23168b32da { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor' } -C3N-02152.RNA-Seq.chimeric.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 ee48e5c5-ccd7-4dfa-91ce-3a0ba50be00d.rna_seq.chimeric.gdc_realn.bam 26833936 BAM chimeric harmonized CPTAC3 2f137349-59a1-4302-8cde-6426e4150198 d77613a7ac8fbf7c0c321acd53415b74 { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02152.RNA-Seq.chimeric.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0bdfdbf7-43e0-455b-b7c6-187e0a90ceb3.rna_seq.chimeric.gdc_realn.bam 29088862 BAM chimeric harmonized CPTAC3 598c16ca-d0ae-481d-b4b9-4b0ea4f1a969 a31f4edc9c27c57c1f4eac691aee230c { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor' } -C3N-02152.RNA-Seq.genomic.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 ee48e5c5-ccd7-4dfa-91ce-3a0ba50be00d.rna_seq.genomic.gdc_realn.bam 6721833761 BAM genomic harmonized CPTAC3 f557b58d-b20a-4100-b5cc-d1baf50d4fa5 823ce76785434037ed157fbae45e5eed { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02152.RNA-Seq.genomic.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0bdfdbf7-43e0-455b-b7c6-187e0a90ceb3.rna_seq.genomic.gdc_realn.bam 7964243900 BAM genomic harmonized CPTAC3 e6d90553-b72a-42de-8520-fb5b7dc6913b 9eb523386bb7395b70ad64996d26b508 { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor' } -C3N-02152.RNA-Seq.R1_L006.A C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 190621_UNC32-K00270_0185_BH7G72BBXY_TAAGGTCA-TGTCGTAG_S21_L006_R1_001.fastq.gz 3215151593 FASTQ R1_L006 unaligned CPTAC3 fd006dcd-2dbf-477a-9d4a-7a838a7c0f87 fcfc363c457796f58ae680e16d0523ad { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02152.RNA-Seq.R1_L006.T C3N-02152 LUAD RNA-Seq tumor CPT0213780010 190621_UNC32-K00270_0185_BH7G72BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3780577816 FASTQ R1_L006 unaligned CPTAC3 ff6460e8-9b60-464d-812d-fd7a62d1f4f7 91984d2d750fea307b434ec5bd5e8631 { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor' } -C3N-02152.RNA-Seq.R2_L006.A C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 190621_UNC32-K00270_0185_BH7G72BBXY_TAAGGTCA-TGTCGTAG_S21_L006_R2_001.fastq.gz 3423211453 FASTQ R2_L006 unaligned CPTAC3 2c8d43f8-39c1-4d42-861e-733d44c45f55 d39ed16c6de6fe982e79b6522d4bd621 { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02152.RNA-Seq.R2_L006.T C3N-02152 LUAD RNA-Seq tumor CPT0213780010 190621_UNC32-K00270_0185_BH7G72BBXY_CGGAACTG-CACTACGA_S22_L006_R2_001.fastq.gz 4057251399 FASTQ R2_L006 unaligned CPTAC3 ad7d2edd-5cdc-46f9-a31c-9ca68f2eda09 968795a62634a2da0ca4523ec2e41d70 { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor' } -C3N-02152.RNA-Seq.transcriptome.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 ee48e5c5-ccd7-4dfa-91ce-3a0ba50be00d.rna_seq.transcriptome.gdc_realn.bam 6701597678 BAM transcriptome harmonized CPTAC3 11c30e3d-c351-43e6-a672-54e920617b5e f0b56eee5dbb34aef8b73cf4697524b7 { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02152.RNA-Seq.transcriptome.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0bdfdbf7-43e0-455b-b7c6-187e0a90ceb3.rna_seq.transcriptome.gdc_realn.bam 8669610675 BAM transcriptome harmonized CPTAC3 cf4f2278-b543-47c5-acb7-f7362755a981 fd764eb2147f3dc47e85bc1fa78fc233 { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor' } +C3N-02152.RNA-Seq.chimeric.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 c9cd0f68-72fa-40ef-9b37-a01552a14ef5.rna_seq.chimeric.gdc_realn.bam 26824479 BAM chimeric harmonized CPTAC3 23979adb-44b2-43b5-9eba-c377f2c70991 c9a6bb4080a07d51e772b49e8d2c7044 { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02152.RNA-Seq.chimeric.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0b16d572-925a-40ea-85cb-abbead3ada0f.rna_seq.chimeric.gdc_realn.bam 29088869 BAM chimeric harmonized CPTAC3 3dcacbff-0d89-4be9-96f0-92a6ed7ca878 54e6412268f8806070d8a446544c923e { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor' } +C3N-02152.RNA-Seq.genomic.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 c9cd0f68-72fa-40ef-9b37-a01552a14ef5.rna_seq.genomic.gdc_realn.bam 6722834500 BAM genomic harmonized CPTAC3 67f8ab22-7dc9-49e6-8a80-856586d69a0e bd41fcd5db759bd97d3bc46802bede63 { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02152.RNA-Seq.genomic.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0b16d572-925a-40ea-85cb-abbead3ada0f.rna_seq.genomic.gdc_realn.bam 7965194908 BAM genomic harmonized CPTAC3 cc1c9459-aaba-4625-9dd8-2797b1d56c76 81807dcbfd5d4b8ada269166eeaa5a3a { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor' } +C3N-02152.RNA-Seq.R1_L006.A C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 190621_UNC32-K00270_0185_BH7G72BBXY_TAAGGTCA-TGTCGTAG_S21_L006_R1_001.fastq.gz 3215151593 FASTQ R1_L006 unaligned CPTAC3 fd006dcd-2dbf-477a-9d4a-7a838a7c0f87 fcfc363c457796f58ae680e16d0523ad { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02152.RNA-Seq.R1_L006.T C3N-02152 LUAD RNA-Seq tumor CPT0213780010 190621_UNC32-K00270_0185_BH7G72BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3780577816 FASTQ R1_L006 unaligned CPTAC3 ff6460e8-9b60-464d-812d-fd7a62d1f4f7 91984d2d750fea307b434ec5bd5e8631 { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02152.RNA-Seq.R2_L006.A C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 190621_UNC32-K00270_0185_BH7G72BBXY_TAAGGTCA-TGTCGTAG_S21_L006_R2_001.fastq.gz 3423211453 FASTQ R2_L006 unaligned CPTAC3 2c8d43f8-39c1-4d42-861e-733d44c45f55 d39ed16c6de6fe982e79b6522d4bd621 { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02152.RNA-Seq.R2_L006.T C3N-02152 LUAD RNA-Seq tumor CPT0213780010 190621_UNC32-K00270_0185_BH7G72BBXY_CGGAACTG-CACTACGA_S22_L006_R2_001.fastq.gz 4057251399 FASTQ R2_L006 unaligned CPTAC3 ad7d2edd-5cdc-46f9-a31c-9ca68f2eda09 968795a62634a2da0ca4523ec2e41d70 { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02152.RNA-Seq.transcriptome.A.hg38 C3N-02152 LUAD RNA-Seq tissue_normal CPT0213790010 c9cd0f68-72fa-40ef-9b37-a01552a14ef5.rna_seq.transcriptome.gdc_realn.bam 7643707635 BAM transcriptome harmonized CPTAC3 f3a57444-fabb-472e-a77e-78161a700219 09a8c2d6df46d9beaef6637edb5b8664 { 'aliquot_tag': 'ALQ_c27d0ec0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02152.RNA-Seq.transcriptome.T.hg38 C3N-02152 LUAD RNA-Seq tumor CPT0213780010 0b16d572-925a-40ea-85cb-abbead3ada0f.rna_seq.transcriptome.gdc_realn.bam 9853448824 BAM transcriptome harmonized CPTAC3 0f44cc1a-6892-4b04-bfd0-146aa064f3af 80f7098752f4471e442856c1a313546d { 'aliquot_tag': 'ALQ_ff1d2770', 'gdc_sample_type': 'Primary Tumor' } C3N-02152.WGS.N C3N-02152 LUAD WGS blood_normal CPT0213870002 CPT0213870002.WholeGenome.RP-1303.bam 55692279926 BAM aligned CPTAC3 e809edc2-604b-486c-b646-6a28b027b3f9 09e9f21ddc96fbb10fa1b4298ef81043 { 'aliquot_tag': 'ALQ_7b0e5219', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02152.WGS.N.hg38 C3N-02152 LUAD WGS blood_normal CPT0213870002 3299cdaa-f8e7-42b1-b141-c111fed56e3c_wgs_gdc_realn.bam 81505154773 BAM harmonized CPTAC3 85cb595c-9877-4cbd-ae67-27aadd3b195d bcc41cbcc9fff53626ca03cde95dbf4e { 'aliquot_tag': 'ALQ_7b0e5219', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02152.WGS.T C3N-02152 LUAD WGS tumor CPT0213780007 CPT0213780007.WholeGenome.RP-1303.bam 60830350509 BAM aligned CPTAC3 19fd2713-33c9-4f22-ad51-7109448e2b86 054ccfd664a8f7dd0e98052a1e4dc7c8 { 'aliquot_tag': 'ALQ_78628392', 'gdc_sample_type': 'Primary Tumor' } @@ -29557,16 +31640,16 @@ C3N-02153.miRNA-Seq.A C3N-02153 LUAD miRNA-Seq tissue_normal CPT0118770006 18110 C3N-02153.miRNA-Seq.A.hg38 C3N-02153 LUAD miRNA-Seq tissue_normal CPT0118770006 131256f9-325e-47ab-ae58-8f8a0bdc711a_mirnaseq_gdc_realn.bam 219172207 BAM harmonized CPTAC3 5eaf7e92-9d61-45a1-8ae9-1c9174b73c15 0488af8cbcb304ef831e4e31b7295207 { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02153.miRNA-Seq.T C3N-02153 LUAD miRNA-Seq tumor CPT0118740009 181119_UNC31-K00269_0165_AH27WCBBXY_TATAAT_S20_L004_R1_001.unaln.bam 269801150 BAM unaligned CPTAC3 20e8ffd3-2783-4ef6-ae12-dab3c6b405de 7f6899b2e37c94695ef8f0b6031c3748 { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor' } C3N-02153.miRNA-Seq.T.hg38 C3N-02153 LUAD miRNA-Seq tumor CPT0118740009 6cf7025b-7cfb-47c5-80d5-be68b498be64_mirnaseq_gdc_realn.bam 288098789 BAM harmonized CPTAC3 a4205c1f-b8b3-43f1-af22-6f2efcbd3275 026dc4069851d83b5143314026dbd19b { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor' } -C3N-02153.RNA-Seq.chimeric.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 648427cf-958c-4276-9c15-caac05839bd1.rna_seq.chimeric.gdc_realn.bam 119184690 BAM chimeric harmonized CPTAC3 14bf05d4-0015-4073-9995-0d20ea9bcd24 e43f1c14ec70bc24e88a5e88fe14dec7 { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02153.RNA-Seq.chimeric.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 5af50eea-24cc-4651-bb02-4b072ecc9ab0.rna_seq.chimeric.gdc_realn.bam 74156206 BAM chimeric harmonized CPTAC3 665be3f7-3dd5-4e90-954f-f0b178208e0c a8b2037ee3aa8465e10b6aa6468697ee { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor' } -C3N-02153.RNA-Seq.genomic.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 648427cf-958c-4276-9c15-caac05839bd1.rna_seq.genomic.gdc_realn.bam 7443908930 BAM genomic harmonized CPTAC3 2aa5a710-856b-4799-935f-9f28f0c95230 8c52177d7fb8e932fa4885cb7d8c533e { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02153.RNA-Seq.genomic.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 5af50eea-24cc-4651-bb02-4b072ecc9ab0.rna_seq.genomic.gdc_realn.bam 7811002473 BAM genomic harmonized CPTAC3 506c3004-4a76-486a-be41-35ca3e200c48 30530ca79d59d686ca4e54287d17f79c { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor' } -C3N-02153.RNA-Seq.R1_L004.A C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGTACG_S12_L004_R1_001.fastq.gz 3609502695 FASTQ R1_L004 unaligned CPTAC3 e5fe04bc-dd4e-496a-a8ad-11210a10aeaf 3a841f4b525eefbe134c7d5b20dff7fd { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02153.RNA-Seq.R1_L006.T C3N-02153 LUAD RNA-Seq tumor CPT0118740009 171116_UNC31-K00269_0093_BHMFKJBBXX_GAGTGG_S21_L006_R1_001.fastq.gz 3700498060 FASTQ R1_L006 unaligned CPTAC3 c24bfb5f-7d82-4aad-a8ef-3bc0fc68f1f7 ff976d4ee9340cb6f79a1e1c57b39377 { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor' } -C3N-02153.RNA-Seq.R2_L004.A C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGTACG_S12_L004_R2_001.fastq.gz 4014951162 FASTQ R2_L004 unaligned CPTAC3 7fe50e5a-eec1-4fae-825f-8b1797741125 e3ccc3ff751a4a24dd4982dca6af6a58 { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02153.RNA-Seq.R2_L006.T C3N-02153 LUAD RNA-Seq tumor CPT0118740009 171116_UNC31-K00269_0093_BHMFKJBBXX_GAGTGG_S21_L006_R2_001.fastq.gz 4149659004 FASTQ R2_L006 unaligned CPTAC3 eae1810b-311b-4c8a-a687-62a903e0af6f 2e2cffe85608c9da66695fd3e5f3f264 { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor' } -C3N-02153.RNA-Seq.transcriptome.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 648427cf-958c-4276-9c15-caac05839bd1.rna_seq.transcriptome.gdc_realn.bam 8461010080 BAM transcriptome harmonized CPTAC3 8748cd9c-dc76-45c3-a479-bf93395fc69a 177115d52cba4990c7706517fb784cb3 { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02153.RNA-Seq.transcriptome.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 5af50eea-24cc-4651-bb02-4b072ecc9ab0.rna_seq.transcriptome.gdc_realn.bam 9607852605 BAM transcriptome harmonized CPTAC3 77f3e183-25f4-43b8-b670-57f2d2a207a8 086e9d43744bd52b86e85c945bea86cd { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor' } +C3N-02153.RNA-Seq.chimeric.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 19d1b700-c0c1-4482-83df-cb197073b373.rna_seq.chimeric.gdc_realn.bam 119161499 BAM chimeric harmonized CPTAC3 4a4e7102-e8f0-40fd-af3d-c8816e352f14 e3ebcb502a7a9426f58145e4a66b0b49 { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02153.RNA-Seq.chimeric.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 0f26c63f-1e8d-494c-ac23-a07b6b4dd70e.rna_seq.chimeric.gdc_realn.bam 74133855 BAM chimeric harmonized CPTAC3 388e3ef1-4459-40b5-b17c-44eff4d909cb cdf79695f6bf06e1fbd3f72ed786cbe4 { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor' } +C3N-02153.RNA-Seq.genomic.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 19d1b700-c0c1-4482-83df-cb197073b373.rna_seq.genomic.gdc_realn.bam 7445027021 BAM genomic harmonized CPTAC3 e99a5ba8-c303-48be-a0ea-e05eaf57e12f 6af07b54c55c87dc1b4bc784069879dc { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02153.RNA-Seq.genomic.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 0f26c63f-1e8d-494c-ac23-a07b6b4dd70e.rna_seq.genomic.gdc_realn.bam 7812122595 BAM genomic harmonized CPTAC3 51fe509b-51e7-476d-8b08-9b05622f98fb 7313c3d6495d5a97fed4b270129aa22c { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor' } +C3N-02153.RNA-Seq.R1_L004.A C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGTACG_S12_L004_R1_001.fastq.gz 3609502695 FASTQ R1_L004 unaligned CPTAC3 e5fe04bc-dd4e-496a-a8ad-11210a10aeaf 3a841f4b525eefbe134c7d5b20dff7fd { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02153.RNA-Seq.R1_L006.T C3N-02153 LUAD RNA-Seq tumor CPT0118740009 171116_UNC31-K00269_0093_BHMFKJBBXX_GAGTGG_S21_L006_R1_001.fastq.gz 3700498060 FASTQ R1_L006 unaligned CPTAC3 c24bfb5f-7d82-4aad-a8ef-3bc0fc68f1f7 ff976d4ee9340cb6f79a1e1c57b39377 { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02153.RNA-Seq.R2_L004.A C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 180109_UNC31-K00269_0107_AHNHY2BBXX_CGTACG_S12_L004_R2_001.fastq.gz 4014951162 FASTQ R2_L004 unaligned CPTAC3 7fe50e5a-eec1-4fae-825f-8b1797741125 e3ccc3ff751a4a24dd4982dca6af6a58 { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02153.RNA-Seq.R2_L006.T C3N-02153 LUAD RNA-Seq tumor CPT0118740009 171116_UNC31-K00269_0093_BHMFKJBBXX_GAGTGG_S21_L006_R2_001.fastq.gz 4149659004 FASTQ R2_L006 unaligned CPTAC3 eae1810b-311b-4c8a-a687-62a903e0af6f 2e2cffe85608c9da66695fd3e5f3f264 { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02153.RNA-Seq.transcriptome.A.hg38 C3N-02153 LUAD RNA-Seq tissue_normal CPT0118770006 19d1b700-c0c1-4482-83df-cb197073b373.rna_seq.transcriptome.gdc_realn.bam 9597472711 BAM transcriptome harmonized CPTAC3 26ec9f0c-ece1-46d5-b4ed-cac9322a6e51 1ba57fa009dcd530bbc4f3c7d458df99 { 'aliquot_tag': 'ALQ_b6bf4cea', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02153.RNA-Seq.transcriptome.T.hg38 C3N-02153 LUAD RNA-Seq tumor CPT0118740009 0f26c63f-1e8d-494c-ac23-a07b6b4dd70e.rna_seq.transcriptome.gdc_realn.bam 10933785636 BAM transcriptome harmonized CPTAC3 4b75e058-be63-42a4-bc0a-975ca251cf25 016f56c72dc97353561c9a378a3878ac { 'aliquot_tag': 'ALQ_61a02bab', 'gdc_sample_type': 'Primary Tumor' } C3N-02153.WGS.A C3N-02153 LUAD WGS tissue_normal CPT0118770009 CPT0118770009.WholeGenome.RP-1303.bam 60943193860 BAM aligned CPTAC3 d8335af2-daf7-4e06-92f7-c2c36356237a 2346d661f7ae42540e4b44b8b2fa84e9 { 'aliquot_tag': 'ALQ_2600517b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02153.WGS.A.hg38 C3N-02153 LUAD WGS tissue_normal CPT0118770009 6651d0de-376c-4aee-a9bf-c3e4f3133498_wgs_gdc_realn.bam 89378010900 BAM harmonized CPTAC3 a06dfda2-7f30-4ab4-95b1-21adec453ee1 e4534fa6efabb0581bdbcdabf8dded5d { 'aliquot_tag': 'ALQ_2600517b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02153.WGS.N C3N-02153 LUAD WGS blood_normal CPT0119990002 CPT0119990002.WholeGenome.RP-1303.bam 57817291678 BAM aligned CPTAC3 bd7f9bb8-e34f-49ba-a9a7-b3078f99e477 19ac1f2980795d719a006c00f593ecc1 { 'aliquot_tag': 'ALQ_929f5c56', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29589,12 +31672,12 @@ C3N-02155.miRNA-Seq.T C3N-02155 LUAD miRNA-Seq tumor CPT0118810009 181119_UNC31- C3N-02155.miRNA-Seq.T.hg38 C3N-02155 LUAD miRNA-Seq tumor CPT0118810009 67396db5-4715-4c08-8a9b-bf861f8f8c33_mirnaseq_gdc_realn.bam 201458794 BAM harmonized CPTAC3 2f103a3a-298d-49ce-a5d3-2838bf3b48c6 c49db62e2c33f2d4e0969a475364161e { 'aliquot_tag': 'ALQ_5816160e', 'gdc_sample_type': 'Primary Tumor' } C3N-02155.RNA-Seq.chimeric.A.hg38 C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 907ec3ef-36fb-4125-8369-dc1e409f120e.rna_seq.chimeric.gdc_realn.bam 125959932 BAM chimeric harmonized CPTAC3 e25f3f1d-52ba-4b55-81ea-1bfba42a405a dc7f586e834d04a090ca5f94520ff910 { 'aliquot_tag': 'ALQ_b26958ff', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02155.RNA-Seq.chimeric.T.hg38 C3N-02155 LUAD RNA-Seq tumor CPT0118810009 55ee3d0e-2d95-45fb-8ed1-bf4a8cea7382.rna_seq.chimeric.gdc_realn.bam 98515029 BAM chimeric harmonized CPTAC3 59078078-03d5-487c-a641-7723441e3937 1af1f6fed6fe94a3658a971b739571f8 { 'aliquot_tag': 'ALQ_5816160e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02155.RNA-Seq.genomic.A.hg38 C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 907ec3ef-36fb-4125-8369-dc1e409f120e.rna_seq.genomic.gdc_realn.bam 8235149281 BAM genomic harmonized CPTAC3 4c617e95-70d0-4029-813b-91f5396a718a 7a5da4134a4bd243d0c299e81816b8fa { 'aliquot_tag': 'ALQ_b26958ff', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02155.RNA-Seq.genomic.T.hg38 C3N-02155 LUAD RNA-Seq tumor CPT0118810009 55ee3d0e-2d95-45fb-8ed1-bf4a8cea7382.rna_seq.genomic.gdc_realn.bam 9695716565 BAM genomic harmonized CPTAC3 5254325b-0bb1-4f05-9b94-f1f6f92c4344 c81276f9e3293b89806eb912b730e24c { 'aliquot_tag': 'ALQ_5816160e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02155.RNA-Seq.R1_L004.A C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 180109_UNC31-K00269_0107_AHNHY2BBXX_GAGTGG_S11_L004_R1_001.fastq.gz 3886925514 FASTQ R1_L004 unaligned CPTAC3 c03632dd-75be-4d6a-8943-deeb263ec97a b6085bae71f21fec768db5755be8f354 { 'aliquot_tag': 'ALQ_b26958ff', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02155.RNA-Seq.R1_L006.T C3N-02155 LUAD RNA-Seq tumor CPT0118810009 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTGAT_S20_L006_R1_001.fastq.gz 4483392925 FASTQ R1_L006 unaligned CPTAC3 1089cd84-cf1f-4909-9415-def442e739e4 516751c28b729c8ab7ef1732238eae25 { 'aliquot_tag': 'ALQ_5816160e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02155.RNA-Seq.R2_L004.A C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 180109_UNC31-K00269_0107_AHNHY2BBXX_GAGTGG_S11_L004_R2_001.fastq.gz 4271302969 FASTQ R2_L004 unaligned CPTAC3 2e7baf63-9630-4c2b-852c-c93fe3520e4d 03014b582fdfb8633d442a63648824d9 { 'aliquot_tag': 'ALQ_b26958ff', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02155.RNA-Seq.R2_L006.T C3N-02155 LUAD RNA-Seq tumor CPT0118810009 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTGAT_S20_L006_R2_001.fastq.gz 4979758655 FASTQ R2_L006 unaligned CPTAC3 c4f6e3b6-0d28-4f97-9717-597deda328cc 71574ab52e47032173a53d1da198184c { 'aliquot_tag': 'ALQ_5816160e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02155.RNA-Seq.genomic.A.hg38 C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 907ec3ef-36fb-4125-8369-dc1e409f120e.rna_seq.genomic.gdc_realn.bam 8235149281 BAM genomic harmonized CPTAC3 aa2a1638-5dc4-48da-81d0-79071b376a1f 7a5da4134a4bd243d0c299e81816b8fa { 'aliquot_tag': 'ALQ_b26958ff', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02155.RNA-Seq.genomic.T.hg38 C3N-02155 LUAD RNA-Seq tumor CPT0118810009 55ee3d0e-2d95-45fb-8ed1-bf4a8cea7382.rna_seq.genomic.gdc_realn.bam 9695716565 BAM genomic harmonized CPTAC3 b9e55002-5275-4186-abcd-8acb7a63c6dd c81276f9e3293b89806eb912b730e24c { 'aliquot_tag': 'ALQ_5816160e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02155.RNA-Seq.R1_L004.A C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 180109_UNC31-K00269_0107_AHNHY2BBXX_GAGTGG_S11_L004_R1_001.fastq.gz 3886925514 FASTQ R1_L004 unaligned CPTAC3 c03632dd-75be-4d6a-8943-deeb263ec97a b6085bae71f21fec768db5755be8f354 { 'aliquot_tag': 'ALQ_b26958ff', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02155.RNA-Seq.R1_L006.T C3N-02155 LUAD RNA-Seq tumor CPT0118810009 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTGAT_S20_L006_R1_001.fastq.gz 4483392925 FASTQ R1_L006 unaligned CPTAC3 1089cd84-cf1f-4909-9415-def442e739e4 516751c28b729c8ab7ef1732238eae25 { 'aliquot_tag': 'ALQ_5816160e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02155.RNA-Seq.R2_L004.A C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 180109_UNC31-K00269_0107_AHNHY2BBXX_GAGTGG_S11_L004_R2_001.fastq.gz 4271302969 FASTQ R2_L004 unaligned CPTAC3 2e7baf63-9630-4c2b-852c-c93fe3520e4d 03014b582fdfb8633d442a63648824d9 { 'aliquot_tag': 'ALQ_b26958ff', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02155.RNA-Seq.R2_L006.T C3N-02155 LUAD RNA-Seq tumor CPT0118810009 171116_UNC31-K00269_0093_BHMFKJBBXX_ACTGAT_S20_L006_R2_001.fastq.gz 4979758655 FASTQ R2_L006 unaligned CPTAC3 c4f6e3b6-0d28-4f97-9717-597deda328cc 71574ab52e47032173a53d1da198184c { 'aliquot_tag': 'ALQ_5816160e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-02155.RNA-Seq.transcriptome.A.hg38 C3N-02155 LUAD RNA-Seq tissue_normal CPT0118830006 907ec3ef-36fb-4125-8369-dc1e409f120e.rna_seq.transcriptome.gdc_realn.bam 10182580217 BAM transcriptome harmonized CPTAC3 65810de4-d8a1-4623-9371-df90830509e9 d858596f89c2571c1f2c836b62372462 { 'aliquot_tag': 'ALQ_b26958ff', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02155.RNA-Seq.transcriptome.T.hg38 C3N-02155 LUAD RNA-Seq tumor CPT0118810009 55ee3d0e-2d95-45fb-8ed1-bf4a8cea7382.rna_seq.transcriptome.gdc_realn.bam 11616962768 BAM transcriptome harmonized CPTAC3 03e790f8-84ea-4208-8f47-0d3671c8d0ce 394b69221e9710825b7a53931f9d63a3 { 'aliquot_tag': 'ALQ_5816160e', 'gdc_sample_type': 'Primary Tumor' } C3N-02155.WGS.A C3N-02155 LUAD WGS tissue_normal CPT0118830009 CPT0118830009.WholeGenome.RP-1303.bam 52634776484 BAM aligned CPTAC3 2593d748-4e9c-4389-a4b3-25f3ed6e90ab d23111cb13502722df9422538621abc3 { 'aliquot_tag': 'ALQ_22d6456e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -29620,11 +31703,11 @@ C3N-02158.miRNA-Seq.T.hg38 C3N-02158 LUAD miRNA-Seq tumor CPT0118880009 de54dfcb C3N-02158.RNA-Seq.chimeric.A.hg38 C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 f156e501-fd1c-42bc-9ac7-1fdf70e70d08.rna_seq.chimeric.gdc_realn.bam 148160718 BAM chimeric harmonized CPTAC3 b0376378-2110-4100-8ee0-2e6278fb0c69 19aeb74e35f109587773884ac6103642 { 'aliquot_tag': 'ALQ_f8d9405e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02158.RNA-Seq.chimeric.T.hg38 C3N-02158 LUAD RNA-Seq tumor CPT0118880009 c0125ec3-34ef-41b6-9f00-c8733bf2fe1f.rna_seq.chimeric.gdc_realn.bam 40971506 BAM chimeric harmonized CPTAC3 b7b4781c-1ddb-4c7e-9f54-a11270b0e8c1 224057da30f7ca3a020e8f1bced6e9bd { 'aliquot_tag': 'ALQ_5506747f', 'gdc_sample_type': 'Primary Tumor' } C3N-02158.RNA-Seq.genomic.A.hg38 C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 f156e501-fd1c-42bc-9ac7-1fdf70e70d08.rna_seq.genomic.gdc_realn.bam 8963973694 BAM genomic harmonized CPTAC3 055deaf1-b949-42c1-8f7d-380a8db6a339 56d6a04375b0f5b8c532823756c449b2 { 'aliquot_tag': 'ALQ_f8d9405e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02158.RNA-Seq.genomic.T.hg38 C3N-02158 LUAD RNA-Seq tumor CPT0118880009 c0125ec3-34ef-41b6-9f00-c8733bf2fe1f.rna_seq.genomic.gdc_realn.bam 7722666441 BAM genomic harmonized CPTAC3 97d5d803-9524-4bf5-a4c2-2c2dd08d21fa e4425ee19ded64ad90faaf1e458e3eff { 'aliquot_tag': 'ALQ_5506747f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02158.RNA-Seq.R1_L004.A C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTGAT_S14_L004_R1_001.fastq.gz 4455016308 FASTQ R1_L004 unaligned CPTAC3 008de630-33d2-4874-ba58-b5638a251549 4389f9929e21318e6c0c818ad949c6f3 { 'aliquot_tag': 'ALQ_f8d9405e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02158.RNA-Seq.R1_L006.T C3N-02158 LUAD RNA-Seq tumor CPT0118880009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATTCCT_S23_L006_R1_001.fastq.gz 3626537852 FASTQ R1_L006 unaligned CPTAC3 7f8a162d-54b9-4511-96d1-8a3a47a24964 e8f6a7cfefa4b4f6377a43bd007e9506 { 'aliquot_tag': 'ALQ_5506747f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02158.RNA-Seq.R2_L004.A C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTGAT_S14_L004_R2_001.fastq.gz 4865676229 FASTQ R2_L004 unaligned CPTAC3 1e3b88a5-6add-48a0-b1c6-b236f8347f1a 6ddd051bba540a9386459c261550729c { 'aliquot_tag': 'ALQ_f8d9405e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02158.RNA-Seq.R2_L006.T C3N-02158 LUAD RNA-Seq tumor CPT0118880009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATTCCT_S23_L006_R2_001.fastq.gz 4095542003 FASTQ R2_L006 unaligned CPTAC3 ecfcbaf3-fa4d-404c-a7cb-d8ce868b611e 3d13e5979b94c5229f2416127a7cb638 { 'aliquot_tag': 'ALQ_5506747f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02158.RNA-Seq.genomic.T.hg38 C3N-02158 LUAD RNA-Seq tumor CPT0118880009 c0125ec3-34ef-41b6-9f00-c8733bf2fe1f.rna_seq.genomic.gdc_realn.bam 7722666441 BAM genomic harmonized CPTAC3 57ee7913-c0fc-4b4b-aff2-aeb086ae232c e4425ee19ded64ad90faaf1e458e3eff { 'aliquot_tag': 'ALQ_5506747f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02158.RNA-Seq.R1_L004.A C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTGAT_S14_L004_R1_001.fastq.gz 4455016308 FASTQ R1_L004 unaligned CPTAC3 008de630-33d2-4874-ba58-b5638a251549 4389f9929e21318e6c0c818ad949c6f3 { 'aliquot_tag': 'ALQ_f8d9405e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02158.RNA-Seq.R1_L006.T C3N-02158 LUAD RNA-Seq tumor CPT0118880009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATTCCT_S23_L006_R1_001.fastq.gz 3626537852 FASTQ R1_L006 unaligned CPTAC3 7f8a162d-54b9-4511-96d1-8a3a47a24964 e8f6a7cfefa4b4f6377a43bd007e9506 { 'aliquot_tag': 'ALQ_5506747f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02158.RNA-Seq.R2_L004.A C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 180109_UNC31-K00269_0107_AHNHY2BBXX_ACTGAT_S14_L004_R2_001.fastq.gz 4865676229 FASTQ R2_L004 unaligned CPTAC3 1e3b88a5-6add-48a0-b1c6-b236f8347f1a 6ddd051bba540a9386459c261550729c { 'aliquot_tag': 'ALQ_f8d9405e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02158.RNA-Seq.R2_L006.T C3N-02158 LUAD RNA-Seq tumor CPT0118880009 171116_UNC31-K00269_0093_BHMFKJBBXX_ATTCCT_S23_L006_R2_001.fastq.gz 4095542003 FASTQ R2_L006 unaligned CPTAC3 ecfcbaf3-fa4d-404c-a7cb-d8ce868b611e 3d13e5979b94c5229f2416127a7cb638 { 'aliquot_tag': 'ALQ_5506747f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-02158.RNA-Seq.transcriptome.A.hg38 C3N-02158 LUAD RNA-Seq tissue_normal CPT0118890006 f156e501-fd1c-42bc-9ac7-1fdf70e70d08.rna_seq.transcriptome.gdc_realn.bam 11589460194 BAM transcriptome harmonized CPTAC3 382846c0-7db0-466c-bd3a-34a8a3b4ce11 35fac63d9a01a877b71b799cda91c65c { 'aliquot_tag': 'ALQ_f8d9405e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02158.RNA-Seq.transcriptome.T.hg38 C3N-02158 LUAD RNA-Seq tumor CPT0118880009 c0125ec3-34ef-41b6-9f00-c8733bf2fe1f.rna_seq.transcriptome.gdc_realn.bam 10981713037 BAM transcriptome harmonized CPTAC3 89ae2bfe-e9c6-403a-8405-b113d9ec8930 76439d0a8bd954033fd6066afd42b928 { 'aliquot_tag': 'ALQ_5506747f', 'gdc_sample_type': 'Primary Tumor' } C3N-02158.WGS.A C3N-02158 LUAD WGS tissue_normal CPT0118890009 CPT0118890009.WholeGenome.RP-1303.bam 58314843100 BAM aligned CPTAC3 49d3296b-e6b6-42d2-a952-44925b3ac612 d4cf5c66a37e2bc50e9c50e312a279ba { 'aliquot_tag': 'ALQ_68665dcf', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -29647,16 +31730,16 @@ C3N-02160.miRNA-Seq.A C3N-02160 CCRCC miRNA-Seq tissue_normal CPT0213970009 1902 C3N-02160.miRNA-Seq.A.hg38 C3N-02160 CCRCC miRNA-Seq tissue_normal CPT0213970009 52d7413f-e80a-4e0f-a7de-96e4f54fb9a3_mirnaseq_gdc_realn.bam 214761207 BAM harmonized CPTAC3 d99b231e-1725-4750-b289-8937dfd8fdbc 9237de361867ce27fc0461e37ce881ca { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02160.miRNA-Seq.T C3N-02160 CCRCC miRNA-Seq tumor CPT0213960013 190206_UNC31-K00269_0191_AH2WY5BBXY_TTAGGC_S46_L002_R1_001.unaln.bam 202268661 BAM unaligned CPTAC3 dce015cd-a0ef-4b54-98ae-14dd05a54253 9c1d02846e6582abc9f626a89b43eb08 { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor' } C3N-02160.miRNA-Seq.T.hg38 C3N-02160 CCRCC miRNA-Seq tumor CPT0213960013 fb6da363-348c-4ea3-bc93-465cf34a8ee9_mirnaseq_gdc_realn.bam 219537973 BAM harmonized CPTAC3 af4dc7b4-9306-4ebb-98d7-f722bf886ffb 4afee5cf6a9cffbad72f573fdba48162 { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor' } -C3N-02160.RNA-Seq.chimeric.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 54189799-974f-45af-876e-3f79e3823b50.rna_seq.chimeric.gdc_realn.bam 26890809 BAM chimeric harmonized CPTAC3 79987846-5d8f-4827-9fba-eea9802955a7 d55939868606625858db9a7ea0cbe6d6 { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02160.RNA-Seq.chimeric.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 04eca7e9-2ea3-4d0e-9c6b-80d0f551bfce.rna_seq.chimeric.gdc_realn.bam 146676527 BAM chimeric harmonized CPTAC3 ca573ff7-5263-466c-adaf-cf90fadd249b c53ed048b88210fd0784a0b44cd99dc0 { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor' } -C3N-02160.RNA-Seq.genomic.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 54189799-974f-45af-876e-3f79e3823b50.rna_seq.genomic.gdc_realn.bam 5992389160 BAM genomic harmonized CPTAC3 a196f586-0853-45c9-a43e-5659dda82bc4 7ee8e007a84925dd15cc7371749f2399 { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02160.RNA-Seq.genomic.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 04eca7e9-2ea3-4d0e-9c6b-80d0f551bfce.rna_seq.genomic.gdc_realn.bam 6510169611 BAM genomic harmonized CPTAC3 80bdef2c-80d1-4edc-bf29-84ff0e39eea8 acbae133945233814af3dc7134c498ba { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor' } -C3N-02160.RNA-Seq.R1_L003.T C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L003_R1_001.fastq.gz 2583516049 FASTQ R1_L003 unaligned CPTAC3 6311faa9-c7e3-47b5-af45-ee9751856c2e f323cda1957e925e1f5bfc77200a8513 { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor' } -C3N-02160.RNA-Seq.R1_L006.A C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATTCCT_S20_L006_R1_001.fastq.gz 2689274844 FASTQ R1_L006 unaligned CPTAC3 654f49bd-2dc4-4914-a25f-5e5e6a10b989 16aa4b39e7943e892b94e28fd21ba79f { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02160.RNA-Seq.R2_L003.T C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L003_R2_001.fastq.gz 2861016981 FASTQ R2_L003 unaligned CPTAC3 d91ebfcb-32c7-415b-b592-9e65bc58b765 9ed7e25fb176087a0848f5d117555172 { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor' } -C3N-02160.RNA-Seq.R2_L006.A C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATTCCT_S20_L006_R2_001.fastq.gz 2966925408 FASTQ R2_L006 unaligned CPTAC3 aaabdf49-a38f-423c-928d-ba307769224b 3abaa826dcb45ba449cc082e5e08075d { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02160.RNA-Seq.transcriptome.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 54189799-974f-45af-876e-3f79e3823b50.rna_seq.transcriptome.gdc_realn.bam 6050182989 BAM transcriptome harmonized CPTAC3 81019451-e657-4c59-8724-f173c6c0dd3c 036588950eb79543617ffc2cee9decf5 { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02160.RNA-Seq.transcriptome.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 04eca7e9-2ea3-4d0e-9c6b-80d0f551bfce.rna_seq.transcriptome.gdc_realn.bam 6790227895 BAM transcriptome harmonized CPTAC3 0684d073-ff0d-417d-92ee-4a443d009547 7aaa05e55bca851b213bb9a914f6bdfe { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor' } +C3N-02160.RNA-Seq.chimeric.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 627601b7-6a60-4585-ba54-e07f24b9352b.rna_seq.chimeric.gdc_realn.bam 26881827 BAM chimeric harmonized CPTAC3 3c82bba9-b3c0-4382-a1fc-b2204b0079de cc3abfb01915d53f37ab7f615ddf0f6a { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02160.RNA-Seq.chimeric.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 1bd23494-29ea-4f15-9df1-b887486ec533.rna_seq.chimeric.gdc_realn.bam 146640441 BAM chimeric harmonized CPTAC3 82202c27-c3dd-4b26-878d-6fffff8245c5 2db3ed09d6286b1a1971d246f07362da { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor' } +C3N-02160.RNA-Seq.genomic.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 627601b7-6a60-4585-ba54-e07f24b9352b.rna_seq.genomic.gdc_realn.bam 5993147730 BAM genomic harmonized CPTAC3 55e92ae1-5f35-436d-94c3-885066424031 15d7ceed691183a8e6a99201002de563 { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02160.RNA-Seq.genomic.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 1bd23494-29ea-4f15-9df1-b887486ec533.rna_seq.genomic.gdc_realn.bam 6511105230 BAM genomic harmonized CPTAC3 37f72a8d-9260-472b-a308-e1aa625d1a78 f8467f883780cf03f900e16f6e7fb1e5 { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor' } +C3N-02160.RNA-Seq.R1_L003.T C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L003_R1_001.fastq.gz 2583516049 FASTQ R1_L003 unaligned CPTAC3 6311faa9-c7e3-47b5-af45-ee9751856c2e f323cda1957e925e1f5bfc77200a8513 { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02160.RNA-Seq.R1_L006.A C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATTCCT_S20_L006_R1_001.fastq.gz 2689274844 FASTQ R1_L006 unaligned CPTAC3 654f49bd-2dc4-4914-a25f-5e5e6a10b989 16aa4b39e7943e892b94e28fd21ba79f { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02160.RNA-Seq.R2_L003.T C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 190205_UNC32-K00270_0144_BH3M3NBBXY_TTAGGC_S10_L003_R2_001.fastq.gz 2861016981 FASTQ R2_L003 unaligned CPTAC3 d91ebfcb-32c7-415b-b592-9e65bc58b765 9ed7e25fb176087a0848f5d117555172 { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02160.RNA-Seq.R2_L006.A C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATTCCT_S20_L006_R2_001.fastq.gz 2966925408 FASTQ R2_L006 unaligned CPTAC3 aaabdf49-a38f-423c-928d-ba307769224b 3abaa826dcb45ba449cc082e5e08075d { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02160.RNA-Seq.transcriptome.A.hg38 C3N-02160 CCRCC RNA-Seq tissue_normal CPT0213970009 627601b7-6a60-4585-ba54-e07f24b9352b.rna_seq.transcriptome.gdc_realn.bam 6935610412 BAM transcriptome harmonized CPTAC3 ae5891f1-a553-4bd6-ad2a-19b3f7d927e3 cd74cb617782160e9de27d5e44a70df1 { 'aliquot_tag': 'ALQ_27805834', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02160.RNA-Seq.transcriptome.T.hg38 C3N-02160 CCRCC RNA-Seq tumor CPT0213960013 1bd23494-29ea-4f15-9df1-b887486ec533.rna_seq.transcriptome.gdc_realn.bam 7756258287 BAM transcriptome harmonized CPTAC3 585c11e5-1fd5-4b27-b192-666673d7d8f6 0deb620daf109aa9f3fb59692ec7ad73 { 'aliquot_tag': 'ALQ_e32ea9db', 'gdc_sample_type': 'Primary Tumor' } C3N-02160.WGS.A C3N-02160 CCRCC WGS tissue_normal CPT0213970006 CPT0213970006.WholeGenome.RP-1303.bam 61890070939 BAM aligned CPTAC3 75b3b09f-9563-42cb-883e-205ca6fc86b5 50f7dd5e299fe862b60d05563fe8cd1a { 'aliquot_tag': 'ALQ_b73f45a5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02160.WGS.A.hg38 C3N-02160 CCRCC WGS tissue_normal CPT0213970006 f7eb4d17-b505-46f4-89f4-da1c5695a5e2_wgs_gdc_realn.bam 92757430169 BAM harmonized CPTAC3 ceb27de7-e54f-4550-8793-52bae5d871fe b8b2768ae76bbd8a94b8e9825b1f23db { 'aliquot_tag': 'ALQ_b73f45a5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02160.WGS.N C3N-02160 CCRCC WGS blood_normal CPT0214050002 CPT0214050002.WholeGenome.RP-1303.bam 57260754635 BAM aligned CPTAC3 368e382c-eccd-4741-a8b5-ccc2c1c6877e e7b2df7b541552cd0069355542c29665 { 'aliquot_tag': 'ALQ_283abd9a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29674,12 +31757,12 @@ C3N-02181.MethArray.Red.T C3N-02181 GBM Methylation Array tumor CPT0168380006 20 C3N-02181.miRNA-Seq.T C3N-02181 GBM miRNA-Seq tumor CPT0168380009 181119_UNC31-K00269_0165_AH27WCBBXY_GACGAC_S17_L001_R1_001.unaln.bam 252023080 BAM unaligned CPTAC3 c6e3042e-e0ef-4d5c-95fc-04a9f413ce0d 7915fccc3b7146d195b7fa16a50a2f57 { 'aliquot_tag': 'ALQ_35048da5', 'gdc_sample_type': 'Primary Tumor' } C3N-02181.miRNA-Seq.T.hg38 C3N-02181 GBM miRNA-Seq tumor CPT0168380009 c978dbae-6952-4b3c-932f-eaf03b8c80b8_mirnaseq_gdc_realn.bam 286848612 BAM harmonized CPTAC3 197b8779-3929-4e07-9f19-23e3ef205012 4c153e2109c368fb4f1a18df5c682c65 { 'aliquot_tag': 'ALQ_35048da5', 'gdc_sample_type': 'Primary Tumor' } C3N-02181.RNA-Seq.chimeric.T.hg38 C3N-02181 GBM RNA-Seq tumor CPT0168380009 905aab99-b8f4-4769-a3eb-4b5d570fffaf.rna_seq.chimeric.gdc_realn.bam 42912871 BAM chimeric harmonized CPTAC3 d83cb1c0-4cff-4957-87e0-61e60c1aa925 47c48880739391c278218d9ebeeb8534 { 'aliquot_tag': 'ALQ_35048da5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02181.RNA-Seq.genomic.T.hg38 C3N-02181 GBM RNA-Seq tumor CPT0168380009 905aab99-b8f4-4769-a3eb-4b5d570fffaf.rna_seq.genomic.gdc_realn.bam 9332379370 BAM genomic harmonized CPTAC3 21aa2097-bcc8-4be4-9052-0778b8d239e0 ce5108602bcc92ff7258f4d720e5ed3f { 'aliquot_tag': 'ALQ_35048da5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02181.RNA-Seq.R1_L001.T C3N-02181 GBM RNA-Seq tumor CPT0168380009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 4264542017 FASTQ R1_L001 unaligned CPTAC3 cfb8fa20-a639-42fc-873a-9d07271e3122 be7f8c24345c061b57777f7ca4b1bcf8 { 'aliquot_tag': 'ALQ_35048da5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02181.RNA-Seq.R2_L001.T C3N-02181 GBM RNA-Seq tumor CPT0168380009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 4670211980 FASTQ R2_L001 unaligned CPTAC3 b32e9f2c-4aae-4bd8-bc47-7134bc1bb92c 62bb18a19e1f201121b20d9c0a13b22f { 'aliquot_tag': 'ALQ_35048da5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02181.RNA-Seq.genomic.T.hg38 C3N-02181 GBM RNA-Seq tumor CPT0168380009 905aab99-b8f4-4769-a3eb-4b5d570fffaf.rna_seq.genomic.gdc_realn.bam 9332379370 BAM genomic harmonized CPTAC3 0edcbca0-e434-45af-84d3-d13850b051a0 ce5108602bcc92ff7258f4d720e5ed3f { 'aliquot_tag': 'ALQ_35048da5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02181.RNA-Seq.R1_L001.T C3N-02181 GBM RNA-Seq tumor CPT0168380009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L001_R1_001.fastq.gz 4264542017 FASTQ R1_L001 unaligned CPTAC3 cfb8fa20-a639-42fc-873a-9d07271e3122 be7f8c24345c061b57777f7ca4b1bcf8 { 'aliquot_tag': 'ALQ_35048da5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02181.RNA-Seq.R2_L001.T C3N-02181 GBM RNA-Seq tumor CPT0168380009 180516_UNC31-K00269_0130_BHV22JBBXX_GTCCGC_S3_L001_R2_001.fastq.gz 4670211980 FASTQ R2_L001 unaligned CPTAC3 b32e9f2c-4aae-4bd8-bc47-7134bc1bb92c 62bb18a19e1f201121b20d9c0a13b22f { 'aliquot_tag': 'ALQ_35048da5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-02181.RNA-Seq.transcriptome.T.hg38 C3N-02181 GBM RNA-Seq tumor CPT0168380009 905aab99-b8f4-4769-a3eb-4b5d570fffaf.rna_seq.transcriptome.gdc_realn.bam 11885329706 BAM transcriptome harmonized CPTAC3 e2c3d0fc-a230-43ae-ac13-5277f2bd3de7 4214279281cf8bdaf54eda0cbf78550b { 'aliquot_tag': 'ALQ_35048da5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02181.scRNA-Seq.R1_L003.T C3N-02181 GBM scRNA-Seq tumor CPT0168380014 20200611_WUSTL_CPT0168380014_GTGTATTA-TGTGCGGG-ACCATAAC-CAACGCCT_S4_L003_R1_001.fastq.gz 13201477088 FASTQ R1_L003 unaligned CPTAC3 37025c07-5429-415d-97b7-2146c0dea79d 7975a1e42ea5b6028d136606486f7a2b { 'aliquot_tag': 'ALQ_52aec059', 'gdc_sample_type': 'Primary Tumor' } -C3N-02181.scRNA-Seq.R2_L003.T C3N-02181 GBM scRNA-Seq tumor CPT0168380014 20200611_WUSTL_CPT0168380014_GTGTATTA-TGTGCGGG-ACCATAAC-CAACGCCT_S4_L003_R2_001.fastq.gz 31578941138 FASTQ R2_L003 unaligned CPTAC3 dbc7f1b2-21b1-4506-8c2d-fef4951a0b10 82e73bee1aa0fcff8affe78e57ed2aff { 'aliquot_tag': 'ALQ_52aec059', 'gdc_sample_type': 'Primary Tumor' } +C3N-02181.scRNA-Seq.R1_L003.T C3N-02181 GBM scRNA-Seq tumor CPT0168380014 20200611_WUSTL_CPT0168380014_GTGTATTA-TGTGCGGG-ACCATAAC-CAACGCCT_S4_L003_R1_001.fastq.gz 13201477088 FASTQ R1_L003 unaligned CPTAC3 37025c07-5429-415d-97b7-2146c0dea79d 7975a1e42ea5b6028d136606486f7a2b { 'aliquot_tag': 'ALQ_52aec059', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02181.scRNA-Seq.R2_L003.T C3N-02181 GBM scRNA-Seq tumor CPT0168380014 20200611_WUSTL_CPT0168380014_GTGTATTA-TGTGCGGG-ACCATAAC-CAACGCCT_S4_L003_R2_001.fastq.gz 31578941138 FASTQ R2_L003 unaligned CPTAC3 dbc7f1b2-21b1-4506-8c2d-fef4951a0b10 82e73bee1aa0fcff8affe78e57ed2aff { 'aliquot_tag': 'ALQ_52aec059', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-02181.scRNA-Seq.T.hg38 C3N-02181 GBM scRNA-Seq tumor CPT0168380014 possorted_genome_bam.bam 37509207219 BAM harmonized CPTAC3 834eaf46-4552-457c-bd67-b9dfa9161dfa d2a07f4abad92635679a530c69d563d9 { 'aliquot_tag': 'ALQ_52aec059', 'gdc_sample_type': 'Primary Tumor' } C3N-02181.WGS.N C3N-02181 GBM WGS blood_normal CPT0168430002 CPT0168430002.WholeGenome.RP-1303.bam 61662926101 BAM aligned CPTAC3 ddc57c40-b987-4ab8-abcd-3238e31dff72 689a11f1b546d7d392dbc89d22e43694 { 'aliquot_tag': 'ALQ_c8035584', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02181.WGS.N.hg38 C3N-02181 GBM WGS blood_normal CPT0168430002 c1dac155-9fca-4217-893e-8b02a8e95dd4_wgs_gdc_realn.bam 90545302597 BAM harmonized CPTAC3 cfde6003-aa52-42d0-b12c-ec711668f23b b681c09adbebb5d780462d6bd0858923 { 'aliquot_tag': 'ALQ_c8035584', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29695,8 +31778,8 @@ C3N-02183.miRNA-Seq.T C3N-02183 GBM miRNA-Seq tumor CPT0168480009 181119_UNC31-K C3N-02183.miRNA-Seq.T.hg38 C3N-02183 GBM miRNA-Seq tumor CPT0168480009 46f07322-3429-4ed4-9a44-3b08c39482f2_mirnaseq_gdc_realn.bam 224040892 BAM harmonized CPTAC3 17e0f6e7-270f-4c22-93c4-590c49a811a7 a8beb220a5f85c9a7b8bae2780699918 { 'aliquot_tag': 'ALQ_2801bd1d', 'gdc_sample_type': 'Primary Tumor' } C3N-02183.RNA-Seq.chimeric.T.hg38 C3N-02183 GBM RNA-Seq tumor CPT0168480009 5586e0ed-a966-418a-96f8-dbef3c08033f.rna_seq.chimeric.gdc_realn.bam 27988826 BAM chimeric harmonized CPTAC3 9df0c459-f17f-41f6-8c6a-647bc725bd79 ef17d467d483742a0a23b606575b256e { 'aliquot_tag': 'ALQ_2801bd1d', 'gdc_sample_type': 'Primary Tumor' } C3N-02183.RNA-Seq.genomic.T.hg38 C3N-02183 GBM RNA-Seq tumor CPT0168480009 5586e0ed-a966-418a-96f8-dbef3c08033f.rna_seq.genomic.gdc_realn.bam 8150404796 BAM genomic harmonized CPTAC3 c74179fd-daf9-4c81-b450-bd69100b4633 8b794f65e68d12ff1f7adc3332175873 { 'aliquot_tag': 'ALQ_2801bd1d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02183.RNA-Seq.R1_L001.T C3N-02183 GBM RNA-Seq tumor CPT0168480009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 3716036241 FASTQ R1_L001 unaligned CPTAC3 7937d42d-b381-45a1-b45c-935d6359482e 06e065000048f9daad4350c34de19308 { 'aliquot_tag': 'ALQ_2801bd1d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02183.RNA-Seq.R2_L001.T C3N-02183 GBM RNA-Seq tumor CPT0168480009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 3806358030 FASTQ R2_L001 unaligned CPTAC3 76ab475c-3258-41fc-ad50-a91680b3cd9e 907afa6f8bd2bfb9d7f3cd311e544f3e { 'aliquot_tag': 'ALQ_2801bd1d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02183.RNA-Seq.R1_L001.T C3N-02183 GBM RNA-Seq tumor CPT0168480009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 3716036241 FASTQ R1_L001 unaligned CPTAC3 7937d42d-b381-45a1-b45c-935d6359482e 06e065000048f9daad4350c34de19308 { 'aliquot_tag': 'ALQ_2801bd1d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02183.RNA-Seq.R2_L001.T C3N-02183 GBM RNA-Seq tumor CPT0168480009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 3806358030 FASTQ R2_L001 unaligned CPTAC3 76ab475c-3258-41fc-ad50-a91680b3cd9e 907afa6f8bd2bfb9d7f3cd311e544f3e { 'aliquot_tag': 'ALQ_2801bd1d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-02183.RNA-Seq.transcriptome.T.hg38 C3N-02183 GBM RNA-Seq tumor CPT0168480009 5586e0ed-a966-418a-96f8-dbef3c08033f.rna_seq.transcriptome.gdc_realn.bam 10860856447 BAM transcriptome harmonized CPTAC3 9794528a-98be-4856-a376-6bba9f19bdd1 7e862a7c2ec057177e43f5f1be1bec51 { 'aliquot_tag': 'ALQ_2801bd1d', 'gdc_sample_type': 'Primary Tumor' } C3N-02183.WGS.N C3N-02183 GBM WGS blood_normal CPT0168540004 CPT0168540004.WholeGenome.RP-1303.bam 53209010684 BAM aligned CPTAC3 c21fa708-fb23-4c08-a5c9-1a8fc9061ae5 8b1ad49713f06760a295e857b71feffe { 'aliquot_tag': 'ALQ_581cff04', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02183.WGS.N.hg38 C3N-02183 GBM WGS blood_normal CPT0168540004 ede2c262-e52f-4ba3-a802-058195b89e64_wgs_gdc_realn.bam 78172680973 BAM harmonized CPTAC3 226a2938-6b47-4ad8-a6d0-f7e4eb129a14 0283017417a7502107d0b1109196ae89 { 'aliquot_tag': 'ALQ_581cff04', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29711,9 +31794,9 @@ C3N-02185.MethArray.Red.T C3N-02185 GBM Methylation Array tumor CPT0168590006 20 C3N-02185.miRNA-Seq.T C3N-02185 GBM miRNA-Seq tumor CPT0168590009 181119_UNC31-K00269_0165_AH27WCBBXY_TACAGC_S19_L001_R1_001.unaln.bam 210363744 BAM unaligned CPTAC3 41215cb6-08bc-48f5-a21a-9823378c3a7b 50e99f0ce03579bad5dfe51af1ab8503 { 'aliquot_tag': 'ALQ_de3d4708', 'gdc_sample_type': 'Primary Tumor' } C3N-02185.miRNA-Seq.T.hg38 C3N-02185 GBM miRNA-Seq tumor CPT0168590009 3bec02b2-5e83-493d-8ec8-61bc1d06456a_mirnaseq_gdc_realn.bam 240134900 BAM harmonized CPTAC3 b4707c2c-df15-4ba2-8362-eb3a8abacbdd dacd2627886254fceccbed114159e04f { 'aliquot_tag': 'ALQ_de3d4708', 'gdc_sample_type': 'Primary Tumor' } C3N-02185.RNA-Seq.chimeric.T.hg38 C3N-02185 GBM RNA-Seq tumor CPT0168590009 87f34b1f-606e-4e7d-90c4-ed291e89a90d.rna_seq.chimeric.gdc_realn.bam 32247072 BAM chimeric harmonized CPTAC3 f89dec97-55fe-45c2-9ed5-63336d4bde86 273b5dc03825653df2dd2064124d3655 { 'aliquot_tag': 'ALQ_de3d4708', 'gdc_sample_type': 'Primary Tumor' } -C3N-02185.RNA-Seq.genomic.T.hg38 C3N-02185 GBM RNA-Seq tumor CPT0168590009 87f34b1f-606e-4e7d-90c4-ed291e89a90d.rna_seq.genomic.gdc_realn.bam 8917268248 BAM genomic harmonized CPTAC3 15ef39e3-de1d-4dce-ad0c-142edcefe860 e4a42d7134580bd447f684198510654c { 'aliquot_tag': 'ALQ_de3d4708', 'gdc_sample_type': 'Primary Tumor' } -C3N-02185.RNA-Seq.R1_L001.T C3N-02185 GBM RNA-Seq tumor CPT0168590009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4081098049 FASTQ R1_L001 unaligned CPTAC3 9d2fbbc6-40d1-4832-a3bf-f619f4cdbb71 aa8799909db21e55d05a191f10ad7a41 { 'aliquot_tag': 'ALQ_de3d4708', 'gdc_sample_type': 'Primary Tumor' } -C3N-02185.RNA-Seq.R2_L001.T C3N-02185 GBM RNA-Seq tumor CPT0168590009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4373203364 FASTQ R2_L001 unaligned CPTAC3 2e1b3952-7b8a-4b7e-b0e8-e79078c3648e 6d0424f24acf343bb24092bb90d3de6a { 'aliquot_tag': 'ALQ_de3d4708', 'gdc_sample_type': 'Primary Tumor' } +C3N-02185.RNA-Seq.genomic.T.hg38 C3N-02185 GBM RNA-Seq tumor CPT0168590009 87f34b1f-606e-4e7d-90c4-ed291e89a90d.rna_seq.genomic.gdc_realn.bam 8917268248 BAM genomic harmonized CPTAC3 e3a5e97d-6bb3-4280-9f9f-324ef42985f1 e4a42d7134580bd447f684198510654c { 'aliquot_tag': 'ALQ_de3d4708', 'gdc_sample_type': 'Primary Tumor' } +C3N-02185.RNA-Seq.R1_L001.T C3N-02185 GBM RNA-Seq tumor CPT0168590009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L001_R1_001.fastq.gz 4081098049 FASTQ R1_L001 unaligned CPTAC3 9d2fbbc6-40d1-4832-a3bf-f619f4cdbb71 aa8799909db21e55d05a191f10ad7a41 { 'aliquot_tag': 'ALQ_de3d4708', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02185.RNA-Seq.R2_L001.T C3N-02185 GBM RNA-Seq tumor CPT0168590009 180516_UNC31-K00269_0130_BHV22JBBXX_GTGGCC_S1_L001_R2_001.fastq.gz 4373203364 FASTQ R2_L001 unaligned CPTAC3 2e1b3952-7b8a-4b7e-b0e8-e79078c3648e 6d0424f24acf343bb24092bb90d3de6a { 'aliquot_tag': 'ALQ_de3d4708', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-02185.RNA-Seq.transcriptome.T.hg38 C3N-02185 GBM RNA-Seq tumor CPT0168590009 87f34b1f-606e-4e7d-90c4-ed291e89a90d.rna_seq.transcriptome.gdc_realn.bam 11343477657 BAM transcriptome harmonized CPTAC3 c0d3f20b-00b0-4dcd-8bd9-b7ff5f37810d 2e439e9dbfffb87bda491af31e800d61 { 'aliquot_tag': 'ALQ_de3d4708', 'gdc_sample_type': 'Primary Tumor' } C3N-02185.WGS.N C3N-02185 GBM WGS blood_normal CPT0168650002 CPT0168650002.WholeGenome.RP-1303.bam 54313533743 BAM aligned CPTAC3 d40bd842-0e49-4351-a5fd-b0d587115940 d5d2e9ed0b096a6605d40d51b0fdc6b4 { 'aliquot_tag': 'ALQ_a8b012f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02185.WGS.N.hg38 C3N-02185 GBM WGS blood_normal CPT0168650002 ed416ffd-7a75-4a7c-b34c-b0d650cb5115_wgs_gdc_realn.bam 79381413593 BAM harmonized CPTAC3 35c10200-63e3-4aa0-a326-06081c354282 c8340ab7b26d45ec78c88dc283072f22 { 'aliquot_tag': 'ALQ_a8b012f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29728,9 +31811,9 @@ C3N-02186.MethArray.Red.T C3N-02186 GBM Methylation Array tumor CPT0168720006 20 C3N-02186.miRNA-Seq.T C3N-02186 GBM miRNA-Seq tumor CPT0168720009 181119_UNC31-K00269_0165_AH27WCBBXY_TATAAT_S20_L001_R1_001.unaln.bam 231377643 BAM unaligned CPTAC3 0357425e-fb97-43fd-b72e-80d90db79d9d ada82e2e405c0c9244f92ea9d8b2a780 { 'aliquot_tag': 'ALQ_e425d712', 'gdc_sample_type': 'Primary Tumor' } C3N-02186.miRNA-Seq.T.hg38 C3N-02186 GBM miRNA-Seq tumor CPT0168720009 c10bcd3f-2623-4f9a-8c57-ffc6604243a6_mirnaseq_gdc_realn.bam 258439383 BAM harmonized CPTAC3 775ca33e-a4ad-4732-8b15-c184591e6e91 37cac2520b4924592a3a41ad9d26aa8c { 'aliquot_tag': 'ALQ_e425d712', 'gdc_sample_type': 'Primary Tumor' } C3N-02186.RNA-Seq.chimeric.T.hg38 C3N-02186 GBM RNA-Seq tumor CPT0168720009 a499340b-a7e7-46a5-8314-eacf942c0a52.rna_seq.chimeric.gdc_realn.bam 31336797 BAM chimeric harmonized CPTAC3 9abd973a-999e-41e2-9e4f-dc5d13047dda ff652355a6ea9c9b1a2be92027c97059 { 'aliquot_tag': 'ALQ_e425d712', 'gdc_sample_type': 'Primary Tumor' } -C3N-02186.RNA-Seq.genomic.T.hg38 C3N-02186 GBM RNA-Seq tumor CPT0168720009 a499340b-a7e7-46a5-8314-eacf942c0a52.rna_seq.genomic.gdc_realn.bam 8076652000 BAM genomic harmonized CPTAC3 f0e76d48-81a2-4b49-bc8b-78b6c14f195d 2647816e4825dea1c6e7269bc3c97b69 { 'aliquot_tag': 'ALQ_e425d712', 'gdc_sample_type': 'Primary Tumor' } -C3N-02186.RNA-Seq.R1_L001.T C3N-02186 GBM RNA-Seq tumor CPT0168720009 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3677947751 FASTQ R1_L001 unaligned CPTAC3 8a653e18-e4d3-4fe6-837e-4eeec9cb6d8b c408310e6e14ed3d4a1d2fd31cfe4c29 { 'aliquot_tag': 'ALQ_e425d712', 'gdc_sample_type': 'Primary Tumor' } -C3N-02186.RNA-Seq.R2_L001.T C3N-02186 GBM RNA-Seq tumor CPT0168720009 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 4003134154 FASTQ R2_L001 unaligned CPTAC3 fe54e8ec-05e4-4ce4-9223-7604b3651819 3955614f781ae5cf2b057d535f160c15 { 'aliquot_tag': 'ALQ_e425d712', 'gdc_sample_type': 'Primary Tumor' } +C3N-02186.RNA-Seq.genomic.T.hg38 C3N-02186 GBM RNA-Seq tumor CPT0168720009 a499340b-a7e7-46a5-8314-eacf942c0a52.rna_seq.genomic.gdc_realn.bam 8076652000 BAM genomic harmonized CPTAC3 8c4ac4bb-d991-4855-a7e5-5a19b9c81f53 2647816e4825dea1c6e7269bc3c97b69 { 'aliquot_tag': 'ALQ_e425d712', 'gdc_sample_type': 'Primary Tumor' } +C3N-02186.RNA-Seq.R1_L001.T C3N-02186 GBM RNA-Seq tumor CPT0168720009 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 3677947751 FASTQ R1_L001 unaligned CPTAC3 8a653e18-e4d3-4fe6-837e-4eeec9cb6d8b c408310e6e14ed3d4a1d2fd31cfe4c29 { 'aliquot_tag': 'ALQ_e425d712', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02186.RNA-Seq.R2_L001.T C3N-02186 GBM RNA-Seq tumor CPT0168720009 180516_UNC31-K00269_0130_BHV22JBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 4003134154 FASTQ R2_L001 unaligned CPTAC3 fe54e8ec-05e4-4ce4-9223-7604b3651819 3955614f781ae5cf2b057d535f160c15 { 'aliquot_tag': 'ALQ_e425d712', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-02186.RNA-Seq.transcriptome.T.hg38 C3N-02186 GBM RNA-Seq tumor CPT0168720009 a499340b-a7e7-46a5-8314-eacf942c0a52.rna_seq.transcriptome.gdc_realn.bam 10128854833 BAM transcriptome harmonized CPTAC3 539e7626-5bb4-477c-816b-fff0edb4435f 8904c4c3701b66dcf712e98a010b36a0 { 'aliquot_tag': 'ALQ_e425d712', 'gdc_sample_type': 'Primary Tumor' } C3N-02186.WGS.N C3N-02186 GBM WGS blood_normal CPT0168760004 CPT0168760004.WholeGenome.RP-1303.bam 58566308529 BAM aligned CPTAC3 5931a880-12bf-4e57-98c9-f615ec3959b3 b2337bf06a20a1527064b89cb57413d5 { 'aliquot_tag': 'ALQ_6f140d6f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02186.WGS.N.hg38 C3N-02186 GBM WGS blood_normal CPT0168760004 90be4c44-6629-4db7-99be-e6f26416714d_wgs_gdc_realn.bam 83909668555 BAM harmonized CPTAC3 ee0a4490-3d5d-4690-8bed-a38db3e2c1a3 a8d03aebd598a3931ad8fc84171b89ba { 'aliquot_tag': 'ALQ_6f140d6f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29745,12 +31828,12 @@ C3N-02188.MethArray.Red.T C3N-02188 GBM Methylation Array tumor CPT0168830006 20 C3N-02188.miRNA-Seq.T C3N-02188 GBM miRNA-Seq tumor CPT0168830009 181119_UNC31-K00269_0165_AH27WCBBXY_CATGGC_S10_L001_R1_001.unaln.bam 204819171 BAM unaligned CPTAC3 0f3c49cf-fa85-4c4b-8d12-496f4f006dde c67b2be181ceaa9ca667989ce996941c { 'aliquot_tag': 'ALQ_28134c77', 'gdc_sample_type': 'Primary Tumor' } C3N-02188.miRNA-Seq.T.hg38 C3N-02188 GBM miRNA-Seq tumor CPT0168830009 27e394cc-830b-4c41-8db6-c312ee6e40e0_mirnaseq_gdc_realn.bam 227040901 BAM harmonized CPTAC3 b84a4564-09bc-4005-b71b-1315a55c0a28 358180817b58cb8d5989e415a6176821 { 'aliquot_tag': 'ALQ_28134c77', 'gdc_sample_type': 'Primary Tumor' } C3N-02188.RNA-Seq.chimeric.T.hg38 C3N-02188 GBM RNA-Seq tumor CPT0168830009 6a97a580-2e26-4e47-b70f-75e3f85fbdcd.rna_seq.chimeric.gdc_realn.bam 36652642 BAM chimeric harmonized CPTAC3 262e7a3b-afcb-446c-b4b6-30cdf471a6d6 98c196148943dc663a578e8836dba64d { 'aliquot_tag': 'ALQ_28134c77', 'gdc_sample_type': 'Primary Tumor' } -C3N-02188.RNA-Seq.genomic.T.hg38 C3N-02188 GBM RNA-Seq tumor CPT0168830009 6a97a580-2e26-4e47-b70f-75e3f85fbdcd.rna_seq.genomic.gdc_realn.bam 10342663344 BAM genomic harmonized CPTAC3 25c649f4-78de-48b4-8684-e132e396446c c97ce21a9d01240f0b21a6a8556ce7ef { 'aliquot_tag': 'ALQ_28134c77', 'gdc_sample_type': 'Primary Tumor' } -C3N-02188.RNA-Seq.R1_L003.T C3N-02188 GBM RNA-Seq tumor CPT0168830009 180516_UNC31-K00269_0130_BHV22JBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4872445125 FASTQ R1_L003 unaligned CPTAC3 17b19efd-d99c-4431-8975-392be567d955 9d2801672dbdbfe292bc098e3354073c { 'aliquot_tag': 'ALQ_28134c77', 'gdc_sample_type': 'Primary Tumor' } -C3N-02188.RNA-Seq.R2_L003.T C3N-02188 GBM RNA-Seq tumor CPT0168830009 180516_UNC31-K00269_0130_BHV22JBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 5271764250 FASTQ R2_L003 unaligned CPTAC3 9cec104e-e480-4804-a01e-4b3aa2e3b147 8859cf3be99c89e5266aa840c3115789 { 'aliquot_tag': 'ALQ_28134c77', 'gdc_sample_type': 'Primary Tumor' } +C3N-02188.RNA-Seq.genomic.T.hg38 C3N-02188 GBM RNA-Seq tumor CPT0168830009 6a97a580-2e26-4e47-b70f-75e3f85fbdcd.rna_seq.genomic.gdc_realn.bam 10342663344 BAM genomic harmonized CPTAC3 884a30fd-a2d0-4ef3-a0d3-3f82c67f68ad c97ce21a9d01240f0b21a6a8556ce7ef { 'aliquot_tag': 'ALQ_28134c77', 'gdc_sample_type': 'Primary Tumor' } +C3N-02188.RNA-Seq.R1_L003.T C3N-02188 GBM RNA-Seq tumor CPT0168830009 180516_UNC31-K00269_0130_BHV22JBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4872445125 FASTQ R1_L003 unaligned CPTAC3 17b19efd-d99c-4431-8975-392be567d955 9d2801672dbdbfe292bc098e3354073c { 'aliquot_tag': 'ALQ_28134c77', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02188.RNA-Seq.R2_L003.T C3N-02188 GBM RNA-Seq tumor CPT0168830009 180516_UNC31-K00269_0130_BHV22JBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 5271764250 FASTQ R2_L003 unaligned CPTAC3 9cec104e-e480-4804-a01e-4b3aa2e3b147 8859cf3be99c89e5266aa840c3115789 { 'aliquot_tag': 'ALQ_28134c77', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-02188.RNA-Seq.transcriptome.T.hg38 C3N-02188 GBM RNA-Seq tumor CPT0168830009 6a97a580-2e26-4e47-b70f-75e3f85fbdcd.rna_seq.transcriptome.gdc_realn.bam 14177712757 BAM transcriptome harmonized CPTAC3 2e768ccd-1c3f-4618-8a69-8edfb39f0888 7aa6aecdba5b8da1c3c5410d2934346a { 'aliquot_tag': 'ALQ_28134c77', 'gdc_sample_type': 'Primary Tumor' } -C3N-02188.scRNA-Seq.R1_L004.T C3N-02188 GBM scRNA-Seq tumor CPT0168830014 20200603_WUSTL_CPT0168830014_GCATCTCC-TGTAAGGT-CTGCGATG-AACGTCAA_S4_L004_R1_001.fastq.gz 7649283315 FASTQ R1_L004 unaligned CPTAC3 d98e9606-3a55-41ce-a742-013daebff0da 29f2ede89bb12353aea6ac941037099b { 'aliquot_tag': 'ALQ_4fb9018b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02188.scRNA-Seq.R2_L004.T C3N-02188 GBM scRNA-Seq tumor CPT0168830014 20200603_WUSTL_CPT0168830014_GCATCTCC-TGTAAGGT-CTGCGATG-AACGTCAA_S4_L004_R2_001.fastq.gz 18359540278 FASTQ R2_L004 unaligned CPTAC3 60112146-2f56-4df0-ad7e-c8767a6b1e17 3f7c8199ffa5f7cf362f611be42a30ae { 'aliquot_tag': 'ALQ_4fb9018b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02188.scRNA-Seq.R1_L004.T C3N-02188 GBM scRNA-Seq tumor CPT0168830014 20200603_WUSTL_CPT0168830014_GCATCTCC-TGTAAGGT-CTGCGATG-AACGTCAA_S4_L004_R1_001.fastq.gz 7649283315 FASTQ R1_L004 unaligned CPTAC3 d98e9606-3a55-41ce-a742-013daebff0da 29f2ede89bb12353aea6ac941037099b { 'aliquot_tag': 'ALQ_4fb9018b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02188.scRNA-Seq.R2_L004.T C3N-02188 GBM scRNA-Seq tumor CPT0168830014 20200603_WUSTL_CPT0168830014_GCATCTCC-TGTAAGGT-CTGCGATG-AACGTCAA_S4_L004_R2_001.fastq.gz 18359540278 FASTQ R2_L004 unaligned CPTAC3 60112146-2f56-4df0-ad7e-c8767a6b1e17 3f7c8199ffa5f7cf362f611be42a30ae { 'aliquot_tag': 'ALQ_4fb9018b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-02188.scRNA-Seq.T.hg38 C3N-02188 GBM scRNA-Seq tumor CPT0168830014 possorted_genome_bam.bam 22969152976 BAM harmonized CPTAC3 a8bb406b-e9be-468c-bd0b-511c327fcc6c d7b3899e426bbb32cab57df17496ed18 { 'aliquot_tag': 'ALQ_4fb9018b', 'gdc_sample_type': 'Primary Tumor' } C3N-02188.WGS.N C3N-02188 GBM WGS blood_normal CPT0168870002 CPT0168870002.WholeGenome.RP-1303.bam 67438684582 BAM aligned CPTAC3 e7fae748-9aad-44b8-a676-87f91c3812be 4d310f44d7e587f6706f8d68be9dde0d { 'aliquot_tag': 'ALQ_4a41333f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02188.WGS.N.hg38 C3N-02188 GBM WGS blood_normal CPT0168870002 ea611a56-b305-4dcc-9d4b-620f7ff6410a_wgs_gdc_realn.bam 99011112123 BAM harmonized CPTAC3 462ec60f-d9e1-4cca-91e6-6146d9e12243 885082e5643d4b0fd2febc01cb7b51e3 { 'aliquot_tag': 'ALQ_4a41333f', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29766,11 +31849,11 @@ C3N-02190.miRNA-Seq.T C3N-02190 GBM miRNA-Seq tumor CPT0205450010 190228_UNC32-K C3N-02190.miRNA-Seq.T.hg38 C3N-02190 GBM miRNA-Seq tumor CPT0205450010 552cc1f8-5fa6-42b9-86e2-f175ecb1aac7_mirnaseq_gdc_realn.bam 330048229 BAM harmonized CPTAC3 dcd3a301-0a39-4348-9017-393aa8ff2652 e94f89c481d229477bf5f49d1225a85c { 'aliquot_tag': 'ALQ_2e63a4cb', 'gdc_sample_type': 'Primary Tumor' } C3N-02190.RNA-Seq.chimeric.T.hg38 C3N-02190 GBM RNA-Seq tumor CPT0205450010 169d443f-d12e-4104-a2b0-f9e01e300031.rna_seq.chimeric.gdc_realn.bam 42747058 BAM chimeric harmonized CPTAC3 fe7b1fb5-9713-4a4e-9c7a-387c6ed1118b 97b335a807fbbfeab2a115b2c21ed744 { 'aliquot_tag': 'ALQ_2e63a4cb', 'gdc_sample_type': 'Primary Tumor' } C3N-02190.RNA-Seq.genomic.T.hg38 C3N-02190 GBM RNA-Seq tumor CPT0205450010 169d443f-d12e-4104-a2b0-f9e01e300031.rna_seq.genomic.gdc_realn.bam 9558799532 BAM genomic harmonized CPTAC3 9771cda1-da1f-40d9-bc33-c59012550a36 23c18055db129a561ba76b491c697124 { 'aliquot_tag': 'ALQ_2e63a4cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-02190.RNA-Seq.R1_L004.T C3N-02190 GBM RNA-Seq tumor CPT0205450010 180918_UNC31-K00269_0152_AHWNJTBBXX_CGATGT_S14_L004_R1_001.fastq.gz 4577241175 FASTQ R1_L004 unaligned CPTAC3 dff391bb-5ef5-4fe5-b902-a66f7d43af89 c27f8cadc1bfb5c0bb5afb6dd587793f { 'aliquot_tag': 'ALQ_2e63a4cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-02190.RNA-Seq.R2_L004.T C3N-02190 GBM RNA-Seq tumor CPT0205450010 180918_UNC31-K00269_0152_AHWNJTBBXX_CGATGT_S14_L004_R2_001.fastq.gz 4780517006 FASTQ R2_L004 unaligned CPTAC3 bf451c95-8a88-4e2c-bd89-2c4911a90a90 cd58234df9468539d384b40e6ea55133 { 'aliquot_tag': 'ALQ_2e63a4cb', 'gdc_sample_type': 'Primary Tumor' } +C3N-02190.RNA-Seq.R1_L004.T C3N-02190 GBM RNA-Seq tumor CPT0205450010 180918_UNC31-K00269_0152_AHWNJTBBXX_CGATGT_S14_L004_R1_001.fastq.gz 4577241175 FASTQ R1_L004 unaligned CPTAC3 dff391bb-5ef5-4fe5-b902-a66f7d43af89 c27f8cadc1bfb5c0bb5afb6dd587793f { 'aliquot_tag': 'ALQ_2e63a4cb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02190.RNA-Seq.R2_L004.T C3N-02190 GBM RNA-Seq tumor CPT0205450010 180918_UNC31-K00269_0152_AHWNJTBBXX_CGATGT_S14_L004_R2_001.fastq.gz 4780517006 FASTQ R2_L004 unaligned CPTAC3 bf451c95-8a88-4e2c-bd89-2c4911a90a90 cd58234df9468539d384b40e6ea55133 { 'aliquot_tag': 'ALQ_2e63a4cb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-02190.RNA-Seq.transcriptome.T.hg38 C3N-02190 GBM RNA-Seq tumor CPT0205450010 169d443f-d12e-4104-a2b0-f9e01e300031.rna_seq.transcriptome.gdc_realn.bam 14757680771 BAM transcriptome harmonized CPTAC3 6507a9ec-86f7-4172-80f1-a2a88d0cfa8c 3c2391038e2e4ba32aef6174df047afc { 'aliquot_tag': 'ALQ_2e63a4cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-02190.scRNA-Seq.R1_L004.T C3N-02190 GBM scRNA-Seq tumor CPT0205450015 20191030_WUSTL_CPT0205450015_CCACTTAT-AACTGGCG-TTGGCATA-GGTAACGC_S1_L004_R1_001.fastq.gz 8605688275 FASTQ R1_L004 unaligned CPTAC3 a0b8f93d-3c1f-4234-88b7-aa9605fba941 053c7569023b9598d13267480e32b4c9 { 'aliquot_tag': 'ALQ_5e095044', 'gdc_sample_type': 'Primary Tumor' } -C3N-02190.scRNA-Seq.R2_L004.T C3N-02190 GBM scRNA-Seq tumor CPT0205450015 20191030_WUSTL_CPT0205450015_CCACTTAT-AACTGGCG-TTGGCATA-GGTAACGC_S1_L004_R2_001.fastq.gz 18925261781 FASTQ R2_L004 unaligned CPTAC3 d7f6adc2-afc3-47e3-83fb-7110e2e60ef9 06e52eaf9cc7dda9db182ed74b5a6ea5 { 'aliquot_tag': 'ALQ_5e095044', 'gdc_sample_type': 'Primary Tumor' } +C3N-02190.scRNA-Seq.R1_L004.T C3N-02190 GBM scRNA-Seq tumor CPT0205450015 20191030_WUSTL_CPT0205450015_CCACTTAT-AACTGGCG-TTGGCATA-GGTAACGC_S1_L004_R1_001.fastq.gz 8605688275 FASTQ R1_L004 unaligned CPTAC3 a0b8f93d-3c1f-4234-88b7-aa9605fba941 053c7569023b9598d13267480e32b4c9 { 'aliquot_tag': 'ALQ_5e095044', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02190.scRNA-Seq.R2_L004.T C3N-02190 GBM scRNA-Seq tumor CPT0205450015 20191030_WUSTL_CPT0205450015_CCACTTAT-AACTGGCG-TTGGCATA-GGTAACGC_S1_L004_R2_001.fastq.gz 18925261781 FASTQ R2_L004 unaligned CPTAC3 d7f6adc2-afc3-47e3-83fb-7110e2e60ef9 06e52eaf9cc7dda9db182ed74b5a6ea5 { 'aliquot_tag': 'ALQ_5e095044', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-02190.scRNA-Seq.T.hg38 C3N-02190 GBM scRNA-Seq tumor CPT0205450015 possorted_genome_bam.bam 21809890384 BAM harmonized CPTAC3 c720f1da-f739-44f0-b577-073daf6f6ba5 3359a3a1d1035c7f8ee3c1b630a9aec2 { 'aliquot_tag': 'ALQ_5e095044', 'gdc_sample_type': 'Primary Tumor' } C3N-02190.WGS.N C3N-02190 GBM WGS blood_normal CPT0205510002 CPT0205510002.WholeGenome.RP-1303.bam 56523101733 BAM aligned CPTAC3 69044463-d458-4dfd-8fa5-77ace6a4da7e 60f6c0aebba70eb143278fdcb1bfc4b0 { 'aliquot_tag': 'ALQ_e7aa81c3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02190.WGS.N.hg38 C3N-02190 GBM WGS blood_normal CPT0205510002 a6e52347-ea57-438b-963b-26d708da3ad1_wgs_gdc_realn.bam 82619204743 BAM harmonized CPTAC3 1907eba9-edc5-45eb-bf07-21627298553b b43ac86a2d62537f73efcf7fd586649b { 'aliquot_tag': 'ALQ_e7aa81c3', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29786,16 +31869,16 @@ C3N-02192.miRNA-Seq.A C3N-02192 LUAD miRNA-Seq tissue_normal CPT0209910006 19072 C3N-02192.miRNA-Seq.A.hg38 C3N-02192 LUAD miRNA-Seq tissue_normal CPT0209910006 0f763042-4829-4b23-8d32-7e6aa0e78e97_mirnaseq_gdc_realn.bam 159450612 BAM harmonized CPTAC3 181d4717-8d87-49e5-be47-43856f66830e 913f6e6a8c2f022fa44609ac15202ae7 { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02192.miRNA-Seq.T C3N-02192 LUAD miRNA-Seq tumor CPT0209620009 190722_UNC31-K00269_0234_AH7VGTBBXY_CTTGTA_S8_L007_R1_001.unaln.bam 185276226 BAM unaligned CPTAC3 18891f5b-06a0-4ab2-8042-89e811e9be26 478d47a5ad636e619f999e732e02284a { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor' } C3N-02192.miRNA-Seq.T.hg38 C3N-02192 LUAD miRNA-Seq tumor CPT0209620009 9a8c61d5-20a8-48e9-aa92-06ba2a7c595a_mirnaseq_gdc_realn.bam 201692419 BAM harmonized CPTAC3 bcd68a12-8e55-4ff3-88a1-922581fc24b5 9fd9df9e6d6149223f791fd810b4452b { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor' } -C3N-02192.RNA-Seq.chimeric.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 49fcb112-1cca-40d3-b7b6-451d6dc8c0ec.rna_seq.chimeric.gdc_realn.bam 279475191 BAM chimeric harmonized CPTAC3 85b18480-ac76-472f-9935-77845fb8d7a4 54190dda80dac87f9d7b128ecc6348b6 { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02192.RNA-Seq.chimeric.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 5dfe1efb-3a26-431c-8464-2364455a6eb3.rna_seq.chimeric.gdc_realn.bam 30040267 BAM chimeric harmonized CPTAC3 dfbdad46-52da-444e-b762-47c7176fcddf fc9d5f54d9010bda2985042e33962807 { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor' } -C3N-02192.RNA-Seq.genomic.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 49fcb112-1cca-40d3-b7b6-451d6dc8c0ec.rna_seq.genomic.gdc_realn.bam 8633548805 BAM genomic harmonized CPTAC3 b4813d26-4f37-4470-ad31-fc10b52fcd4b ddc0136aa9b59fd7901c82559dd86757 { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02192.RNA-Seq.genomic.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 5dfe1efb-3a26-431c-8464-2364455a6eb3.rna_seq.genomic.gdc_realn.bam 10205138024 BAM genomic harmonized CPTAC3 8466cc76-b358-4100-8efa-94c4102a2809 bffd33f68e488bda6dd82b56c10c75aa { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor' } -C3N-02192.RNA-Seq.R1_L001.T C3N-02192 LUAD RNA-Seq tumor CPT0209620009 190612_UNC31-K00269_0223_BH77CWBBXY_AGCTCGCT-GCAGAATC_S2_L001_R1_001.fastq.gz 3863188115 FASTQ R1_L001 unaligned CPTAC3 4a5ab6a1-31e3-4570-965d-1ebbea599c26 f8e511aefebc51aacdc0a5d84a29db21 { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor' } -C3N-02192.RNA-Seq.R1_L005.A C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 190725_UNC32-K00270_0194_AH7HHFBBXY_GTGTCGGA-GCTTGCGC_S20_L005_R1_001.fastq.gz 3673464858 FASTQ R1_L005 unaligned CPTAC3 9de0693d-f6be-4754-bb22-d139c02c5f7c 78071a5702a67a7892017f3e8bec1228 { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02192.RNA-Seq.R2_L001.T C3N-02192 LUAD RNA-Seq tumor CPT0209620009 190612_UNC31-K00269_0223_BH77CWBBXY_AGCTCGCT-GCAGAATC_S2_L001_R2_001.fastq.gz 4423984869 FASTQ R2_L001 unaligned CPTAC3 697e98cc-45ff-46b6-ac3f-acd4dc40e15d 367563c059e73ce2d981ae0b300a6202 { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor' } -C3N-02192.RNA-Seq.R2_L005.A C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 190725_UNC32-K00270_0194_AH7HHFBBXY_GTGTCGGA-GCTTGCGC_S20_L005_R2_001.fastq.gz 3766184346 FASTQ R2_L005 unaligned CPTAC3 5d604433-ecb0-4567-a1d1-8039fc933014 b31a5020e3cc591eaf8bd896a9901037 { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02192.RNA-Seq.transcriptome.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 49fcb112-1cca-40d3-b7b6-451d6dc8c0ec.rna_seq.transcriptome.gdc_realn.bam 6208884755 BAM transcriptome harmonized CPTAC3 9b16dc88-f0b4-440a-812d-ee7e205d5290 5494749d8e1d8b1dc566ae9aa956cd2b { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02192.RNA-Seq.transcriptome.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 5dfe1efb-3a26-431c-8464-2364455a6eb3.rna_seq.transcriptome.gdc_realn.bam 8164709568 BAM transcriptome harmonized CPTAC3 8ba0a492-e9ea-44fc-affb-3c22f422459f b536a7956d833cc6543933b956659fb8 { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor' } +C3N-02192.RNA-Seq.chimeric.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 24bedf78-07cc-489b-83e8-9508046cd07f.rna_seq.chimeric.gdc_realn.bam 279454314 BAM chimeric harmonized CPTAC3 a68fdb9e-93cc-4c5b-95ac-31096fb7b2da 3d36feec2d69dbffb28402052ab3fb17 { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02192.RNA-Seq.chimeric.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 2bdf22d4-664a-45d7-b562-f5f7a974f1bd.rna_seq.chimeric.gdc_realn.bam 30039520 BAM chimeric harmonized CPTAC3 f36221b7-ff39-4068-931e-704ececa93e7 767d4c64b64c0e9e77e32e640db1bb11 { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor' } +C3N-02192.RNA-Seq.genomic.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 24bedf78-07cc-489b-83e8-9508046cd07f.rna_seq.genomic.gdc_realn.bam 8634090414 BAM genomic harmonized CPTAC3 7b2e23af-e87e-4278-a783-41dc7d1b6e38 c6f8fa0e069a5c7740ee0256d6b69872 { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02192.RNA-Seq.genomic.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 2bdf22d4-664a-45d7-b562-f5f7a974f1bd.rna_seq.genomic.gdc_realn.bam 10207929457 BAM genomic harmonized CPTAC3 5622461e-3afd-40aa-8d77-0083726b63ff c443ec7aac540bee82d5c17cf41931d0 { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor' } +C3N-02192.RNA-Seq.R1_L001.T C3N-02192 LUAD RNA-Seq tumor CPT0209620009 190612_UNC31-K00269_0223_BH77CWBBXY_AGCTCGCT-GCAGAATC_S2_L001_R1_001.fastq.gz 3863188115 FASTQ R1_L001 unaligned CPTAC3 4a5ab6a1-31e3-4570-965d-1ebbea599c26 f8e511aefebc51aacdc0a5d84a29db21 { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02192.RNA-Seq.R1_L005.A C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 190725_UNC32-K00270_0194_AH7HHFBBXY_GTGTCGGA-GCTTGCGC_S20_L005_R1_001.fastq.gz 3673464858 FASTQ R1_L005 unaligned CPTAC3 9de0693d-f6be-4754-bb22-d139c02c5f7c 78071a5702a67a7892017f3e8bec1228 { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02192.RNA-Seq.R2_L001.T C3N-02192 LUAD RNA-Seq tumor CPT0209620009 190612_UNC31-K00269_0223_BH77CWBBXY_AGCTCGCT-GCAGAATC_S2_L001_R2_001.fastq.gz 4423984869 FASTQ R2_L001 unaligned CPTAC3 697e98cc-45ff-46b6-ac3f-acd4dc40e15d 367563c059e73ce2d981ae0b300a6202 { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02192.RNA-Seq.R2_L005.A C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 190725_UNC32-K00270_0194_AH7HHFBBXY_GTGTCGGA-GCTTGCGC_S20_L005_R2_001.fastq.gz 3766184346 FASTQ R2_L005 unaligned CPTAC3 5d604433-ecb0-4567-a1d1-8039fc933014 b31a5020e3cc591eaf8bd896a9901037 { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02192.RNA-Seq.transcriptome.A.hg38 C3N-02192 LUAD RNA-Seq tissue_normal CPT0209910006 24bedf78-07cc-489b-83e8-9508046cd07f.rna_seq.transcriptome.gdc_realn.bam 7018897365 BAM transcriptome harmonized CPTAC3 b9e931ea-e70b-495c-ac48-30d90af8a748 2fe83a6dca1d6c2bad9cce07f6891cfa { 'aliquot_tag': 'ALQ_50a5efd5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02192.RNA-Seq.transcriptome.T.hg38 C3N-02192 LUAD RNA-Seq tumor CPT0209620009 2bdf22d4-664a-45d7-b562-f5f7a974f1bd.rna_seq.transcriptome.gdc_realn.bam 9096046820 BAM transcriptome harmonized CPTAC3 bea2df46-a452-4d27-b8ce-e48baf12afca e890b56b9b0a0055435527fe56b4e115 { 'aliquot_tag': 'ALQ_76ec3a41', 'gdc_sample_type': 'Primary Tumor' } C3N-02192.WGS.N C3N-02192 LUAD WGS blood_normal CPT0209970002 CPT0209970002.WholeGenome.RP-1303.bam 78375975724 BAM aligned CPTAC3 6ac9beba-31e1-4cc7-b8c0-3e4be0c016ce 7130bec14302f399cf22378c1ed28182 { 'aliquot_tag': 'ALQ_d888de6c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02192.WGS.N.hg38 C3N-02192 LUAD WGS blood_normal CPT0209970002 064c040e-c959-4259-9428-eb9879dc555d_wgs_gdc_realn.bam 114502455639 BAM harmonized CPTAC3 5b51df68-1646-457d-ae4e-c12735f71a5e 3e9e427ef59e4ee27f21857217535c73 { 'aliquot_tag': 'ALQ_d888de6c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02192.WGS.T C3N-02192 LUAD WGS tumor CPT0209620006 CPT0209620006.WholeGenome.RP-1303.bam 70862351315 BAM aligned CPTAC3 cad1fa8e-20a6-498e-8861-f8593fbddb84 2b96f6f1b84b20328db2d70a7c6c5286 { 'aliquot_tag': 'ALQ_e65327d0', 'gdc_sample_type': 'Primary Tumor' } @@ -29810,16 +31893,16 @@ C3N-02193.miRNA-Seq.A C3N-02193 LUAD miRNA-Seq tissue_normal CPT0210140007 19072 C3N-02193.miRNA-Seq.A.hg38 C3N-02193 LUAD miRNA-Seq tissue_normal CPT0210140007 2adeb77b-7943-42da-9099-9f81a1ce0223_mirnaseq_gdc_realn.bam 213070576 BAM harmonized CPTAC3 952b980d-7a93-4067-9a04-6156b3641813 b8a3e403c3bdf31dd7778accc5a39b45 { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02193.miRNA-Seq.T C3N-02193 LUAD miRNA-Seq tumor CPT0210110009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTCAA_S9_L007_R1_001.unaln.bam 213163763 BAM unaligned CPTAC3 0d7ed8da-fa16-4ff9-b427-6c9c1d4f2700 4f9365e8a11f42676bfa0193268c264b { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor' } C3N-02193.miRNA-Seq.T.hg38 C3N-02193 LUAD miRNA-Seq tumor CPT0210110009 cb21ba0e-ce4e-4ac7-bedd-683fc0453bfc_mirnaseq_gdc_realn.bam 238797070 BAM harmonized CPTAC3 977ad99b-f743-42ce-b33e-902ecd18ac7f ab19037a4420714d2e1513bd033efbe8 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor' } -C3N-02193.RNA-Seq.chimeric.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 30af356b-124a-43a4-b62a-e034b02ca1e4.rna_seq.chimeric.gdc_realn.bam 29332475 BAM chimeric harmonized CPTAC3 44385698-273d-466e-bc70-dbe9f4df399f 3cd8d015326884c91de72577ce71c9eb { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02193.RNA-Seq.chimeric.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 e86c2ca2-f9f6-4065-9a54-77bac5b32e60.rna_seq.chimeric.gdc_realn.bam 29352402 BAM chimeric harmonized CPTAC3 25b86224-232b-4cc4-af86-e80b98edbce3 d5f5687648b5657df040229e1fa44b49 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor' } -C3N-02193.RNA-Seq.genomic.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 30af356b-124a-43a4-b62a-e034b02ca1e4.rna_seq.genomic.gdc_realn.bam 10149387461 BAM genomic harmonized CPTAC3 d819c12d-c391-41e7-8140-0d54775df7e6 1ed76f4b6da0daaa681614f17a7ffc62 { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02193.RNA-Seq.genomic.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 e86c2ca2-f9f6-4065-9a54-77bac5b32e60.rna_seq.genomic.gdc_realn.bam 10391702216 BAM genomic harmonized CPTAC3 00976b7c-c319-4dae-8af3-a1a4ce428c84 6622f7198648de1dec534c10140cea24 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor' } -C3N-02193.RNA-Seq.R1_L001.A C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 190702_UNC32-K00270_0187_AH7FK2BBXY_GGTCACGA-GTATTATG_S3_L001_R1_001.fastq.gz 3891145669 FASTQ R1_L001 unaligned CPTAC3 08dfb55d-d261-4535-93e4-39823d558f2c 424b17f38e0ddd165ea5b38d6c979ec5 { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02193.RNA-Seq.R1_L001.T C3N-02193 LUAD RNA-Seq tumor CPT0210110009 190612_UNC31-K00269_0223_BH77CWBBXY_CGGAACTG-CACTACGA_S1_L001_R1_001.fastq.gz 3812760463 FASTQ R1_L001 unaligned CPTAC3 9ce56cba-2011-4c22-a107-4315aebb72b6 508828dd6dcfe9aefd255d49bb78ea14 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor' } -C3N-02193.RNA-Seq.R2_L001.A C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 190702_UNC32-K00270_0187_AH7FK2BBXY_GGTCACGA-GTATTATG_S3_L001_R2_001.fastq.gz 4376746336 FASTQ R2_L001 unaligned CPTAC3 a8b71541-e1fc-429d-9307-c712076d2694 741508f2fc4307df3d88f831e96e969a { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02193.RNA-Seq.R2_L001.T C3N-02193 LUAD RNA-Seq tumor CPT0210110009 190612_UNC31-K00269_0223_BH77CWBBXY_CGGAACTG-CACTACGA_S1_L001_R2_001.fastq.gz 4425314745 FASTQ R2_L001 unaligned CPTAC3 086f5206-32a4-4143-9af4-cc87f91ac4e4 fac54a70906d0e774566c3db291ecc87 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor' } -C3N-02193.RNA-Seq.transcriptome.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 30af356b-124a-43a4-b62a-e034b02ca1e4.rna_seq.transcriptome.gdc_realn.bam 7835097288 BAM transcriptome harmonized CPTAC3 cf55924a-061e-4074-9d18-3bc3da5a4ec1 fd03573b1aedb97061f4abe8e810c1b5 { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02193.RNA-Seq.transcriptome.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 e86c2ca2-f9f6-4065-9a54-77bac5b32e60.rna_seq.transcriptome.gdc_realn.bam 7397541110 BAM transcriptome harmonized CPTAC3 4bd75a90-55be-457b-8e6d-0a579026a653 627798102df4af6584c7799608a37843 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor' } +C3N-02193.RNA-Seq.chimeric.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 8b2c2c16-3193-4c6c-a9e4-3e4ddec4bdd8.rna_seq.chimeric.gdc_realn.bam 29326623 BAM chimeric harmonized CPTAC3 ef5209e3-9356-423a-bac2-84b9f605a674 44984c4cf2cdefb1c6ed3ee58f48e025 { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02193.RNA-Seq.chimeric.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 62ed5e96-882a-4762-b011-4281e9a49857.rna_seq.chimeric.gdc_realn.bam 29344300 BAM chimeric harmonized CPTAC3 3b97cf53-079c-43c3-960a-a76933b1c235 200bacf87c55a9ff6d5f8e1f612a4d28 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor' } +C3N-02193.RNA-Seq.genomic.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 8b2c2c16-3193-4c6c-a9e4-3e4ddec4bdd8.rna_seq.genomic.gdc_realn.bam 10150552497 BAM genomic harmonized CPTAC3 f492526d-02b1-4cbb-a269-f7a83ef5f031 0e64e918ae77d350def218f87b6b12d3 { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02193.RNA-Seq.genomic.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 62ed5e96-882a-4762-b011-4281e9a49857.rna_seq.genomic.gdc_realn.bam 10392541644 BAM genomic harmonized CPTAC3 5248ff7c-548f-4ae4-a26f-3d0f49c47add 392e12c4b939c5044477caaf32dd4bf2 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor' } +C3N-02193.RNA-Seq.R1_L001.A C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 190702_UNC32-K00270_0187_AH7FK2BBXY_GGTCACGA-GTATTATG_S3_L001_R1_001.fastq.gz 3891145669 FASTQ R1_L001 unaligned CPTAC3 08dfb55d-d261-4535-93e4-39823d558f2c 424b17f38e0ddd165ea5b38d6c979ec5 { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-02193.RNA-Seq.R1_L001.T C3N-02193 LUAD RNA-Seq tumor CPT0210110009 190612_UNC31-K00269_0223_BH77CWBBXY_CGGAACTG-CACTACGA_S1_L001_R1_001.fastq.gz 3812760463 FASTQ R1_L001 unaligned CPTAC3 9ce56cba-2011-4c22-a107-4315aebb72b6 508828dd6dcfe9aefd255d49bb78ea14 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02193.RNA-Seq.R2_L001.A C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 190702_UNC32-K00270_0187_AH7FK2BBXY_GGTCACGA-GTATTATG_S3_L001_R2_001.fastq.gz 4376746336 FASTQ R2_L001 unaligned CPTAC3 a8b71541-e1fc-429d-9307-c712076d2694 741508f2fc4307df3d88f831e96e969a { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-02193.RNA-Seq.R2_L001.T C3N-02193 LUAD RNA-Seq tumor CPT0210110009 190612_UNC31-K00269_0223_BH77CWBBXY_CGGAACTG-CACTACGA_S1_L001_R2_001.fastq.gz 4425314745 FASTQ R2_L001 unaligned CPTAC3 086f5206-32a4-4143-9af4-cc87f91ac4e4 fac54a70906d0e774566c3db291ecc87 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02193.RNA-Seq.transcriptome.A.hg38 C3N-02193 LUAD RNA-Seq tissue_normal CPT0210140007 8b2c2c16-3193-4c6c-a9e4-3e4ddec4bdd8.rna_seq.transcriptome.gdc_realn.bam 8911215835 BAM transcriptome harmonized CPTAC3 5d8df838-3753-4656-8faa-e2cd78454ef0 89c599d872af50f8e485f0bd91a49304 { 'aliquot_tag': 'ALQ_5a239713', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02193.RNA-Seq.transcriptome.T.hg38 C3N-02193 LUAD RNA-Seq tumor CPT0210110009 62ed5e96-882a-4762-b011-4281e9a49857.rna_seq.transcriptome.gdc_realn.bam 8377524110 BAM transcriptome harmonized CPTAC3 135ec554-b80a-45c0-bf21-77c40e816aff f4ba3b1d8139c1bc9a4919fe1ceb2b58 { 'aliquot_tag': 'ALQ_757b3564', 'gdc_sample_type': 'Primary Tumor' } C3N-02193.WGS.N C3N-02193 LUAD WGS blood_normal CPT0210200002 CPT0210200002.WholeGenome.RP-1303.bam 71263705664 BAM aligned CPTAC3 409fde52-52fd-49be-813b-eb86f041dd2e aa8ad7b6c9f06a7c7c98358f147e4f1e { 'aliquot_tag': 'ALQ_595db7f2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02193.WGS.N.hg38 C3N-02193 LUAD WGS blood_normal CPT0210200002 3a7962e7-ea07-4bfa-b260-9b9ea7a99801_wgs_gdc_realn.bam 102902097453 BAM harmonized CPTAC3 39e4f98c-3ef6-4a53-bd37-a85336483013 eba54fd283acb77e0da830be021b1eb5 { 'aliquot_tag': 'ALQ_595db7f2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02193.WGS.T C3N-02193 LUAD WGS tumor CPT0210110006 CPT0210110006.WholeGenome.RP-1303.bam 68530773458 BAM aligned CPTAC3 642a4fed-9915-4b28-b56c-25e69a59401e 603f00c6f97f122ec64a06241dfe01df { 'aliquot_tag': 'ALQ_e5c428f5', 'gdc_sample_type': 'Primary Tumor' } @@ -29836,16 +31919,16 @@ C3N-02224.miRNA-Seq.A C3N-02224 CCRCC miRNA-Seq tissue_normal CPT0214150009 1902 C3N-02224.miRNA-Seq.A.hg38 C3N-02224 CCRCC miRNA-Seq tissue_normal CPT0214150009 827eeea5-ecc1-42b4-a761-846428719934_mirnaseq_gdc_realn.bam 215086911 BAM harmonized CPTAC3 366c3dd4-df35-42f1-bf9d-79eba8b873e5 96963c86fafbd90a3b1b74918cff68d7 { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02224.miRNA-Seq.T C3N-02224 CCRCC miRNA-Seq tumor CPT0214120009 190206_UNC31-K00269_0191_AH2WY5BBXY_CACGAT_S20_L001_R1_001.unaln.bam 224268926 BAM unaligned CPTAC3 74606d63-cdeb-4c86-a021-8b59d5fdb15b 62c9d1ca36e064c42abb4cf7adb79a8b { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor' } C3N-02224.miRNA-Seq.T.hg38 C3N-02224 CCRCC miRNA-Seq tumor CPT0214120009 89c28432-af9a-4532-ae6f-53235878fbe6_mirnaseq_gdc_realn.bam 254935706 BAM harmonized CPTAC3 4eace275-605d-46fe-a927-579ece9c3702 1a1b2c7e2c3983221e8239cd4166d65f { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02224.RNA-Seq.chimeric.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 5b9fdd56-2106-4278-a595-a59c8aa5bccf.rna_seq.chimeric.gdc_realn.bam 89667021 BAM chimeric harmonized CPTAC3 c64c49a5-ddf9-4774-a90c-b24728ab175f ec32d18bee5e94ea9b208c2b2e65b81a { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02224.RNA-Seq.chimeric.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 b73c5fe0-93d5-48bd-9d8f-0f187692a85a.rna_seq.chimeric.gdc_realn.bam 292571301 BAM chimeric harmonized CPTAC3 9fabf583-bfc3-4b13-bf90-ccf05e0eb403 f963b5c06ffccc5c9a86ea9c4ff9cfc8 { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02224.RNA-Seq.genomic.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 5b9fdd56-2106-4278-a595-a59c8aa5bccf.rna_seq.genomic.gdc_realn.bam 8056443917 BAM genomic harmonized CPTAC3 fd8fba00-a539-42ec-99f1-d5c5626b7ef2 3b9911531c73faa8ac0c3af7af683f64 { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02224.RNA-Seq.genomic.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 b73c5fe0-93d5-48bd-9d8f-0f187692a85a.rna_seq.genomic.gdc_realn.bam 6559120915 BAM genomic harmonized CPTAC3 06a010b3-5ce8-4e02-9342-9f1ee9d1c06a 86313e8a4f1b2d53b6a2200e74adc764 { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02224.RNA-Seq.R1_L006.T C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 190201_UNC31-K00269_0189_AH3L7FBBXY_CAGATC_S21_L006_R1_001.fastq.gz 3023425861 FASTQ R1_L006 unaligned CPTAC3 f81d9ea9-72a8-419a-8036-be08a8c883cf 2cc866af6d6da3ba4b323eb52e07b08a { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02224.RNA-Seq.R1_L007.A C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATCACG_S21_L007_R1_001.fastq.gz 4055737113 FASTQ R1_L007 unaligned CPTAC3 a6afa7e4-48f2-4ea7-999a-415793a08171 be27792928483f42883becfff8609c0f { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02224.RNA-Seq.R2_L006.T C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 190201_UNC31-K00269_0189_AH3L7FBBXY_CAGATC_S21_L006_R2_001.fastq.gz 3278043342 FASTQ R2_L006 unaligned CPTAC3 d3f5e52b-6dce-4796-bf26-e8bcf5489cd4 9f38bfdf5549c2757bdfb41b00fa0ee5 { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02224.RNA-Seq.R2_L007.A C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATCACG_S21_L007_R2_001.fastq.gz 3715042125 FASTQ R2_L007 unaligned CPTAC3 ea76370a-5863-4f4c-bfba-7a6be029d5d6 b74e845b5b79be92c9b14aefbf486687 { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02224.RNA-Seq.transcriptome.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 5b9fdd56-2106-4278-a595-a59c8aa5bccf.rna_seq.transcriptome.gdc_realn.bam 7439947307 BAM transcriptome harmonized CPTAC3 ebe8af34-c6cb-47d5-954a-6324df4ee44a 61884410636d240a1c8768e8af5723d7 { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02224.RNA-Seq.transcriptome.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 b73c5fe0-93d5-48bd-9d8f-0f187692a85a.rna_seq.transcriptome.gdc_realn.bam 6806420711 BAM transcriptome harmonized CPTAC3 d628f1bc-d6af-4679-9ba4-0e87060ec1db 7071c1a6a6244c6b9b693f99db28975d { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02224.RNA-Seq.chimeric.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 c0a52463-5e83-46ec-91b3-f46d5960feea.rna_seq.chimeric.gdc_realn.bam 89635040 BAM chimeric harmonized CPTAC3 7446b72e-a103-4e54-ad26-8dd082c57cde 120cd8f047cabe2888d8f116fdbb7071 { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02224.RNA-Seq.chimeric.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 1adcea04-8606-4e47-a247-ce74bd176c87.rna_seq.chimeric.gdc_realn.bam 292527445 BAM chimeric harmonized CPTAC3 994d2d4d-b5df-42dc-a851-6adf610ece41 a58c39e7e7e2b4dcdc143de1801f7835 { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02224.RNA-Seq.genomic.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 c0a52463-5e83-46ec-91b3-f46d5960feea.rna_seq.genomic.gdc_realn.bam 8057378908 BAM genomic harmonized CPTAC3 e02d9628-b76f-49c5-92e8-26035bea98f5 ed0ae046ee27ff2ec294ee73c12f4060 { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02224.RNA-Seq.genomic.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 1adcea04-8606-4e47-a247-ce74bd176c87.rna_seq.genomic.gdc_realn.bam 6560070173 BAM genomic harmonized CPTAC3 bba9163c-0186-46f4-ad25-33a52943c26b 45189d29452e6a076e68ff7ee1316008 { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02224.RNA-Seq.R1_L006.T C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 190201_UNC31-K00269_0189_AH3L7FBBXY_CAGATC_S21_L006_R1_001.fastq.gz 3023425861 FASTQ R1_L006 unaligned CPTAC3 f81d9ea9-72a8-419a-8036-be08a8c883cf 2cc866af6d6da3ba4b323eb52e07b08a { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02224.RNA-Seq.R1_L007.A C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATCACG_S21_L007_R1_001.fastq.gz 4055737113 FASTQ R1_L007 unaligned CPTAC3 a6afa7e4-48f2-4ea7-999a-415793a08171 be27792928483f42883becfff8609c0f { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02224.RNA-Seq.R2_L006.T C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 190201_UNC31-K00269_0189_AH3L7FBBXY_CAGATC_S21_L006_R2_001.fastq.gz 3278043342 FASTQ R2_L006 unaligned CPTAC3 d3f5e52b-6dce-4796-bf26-e8bcf5489cd4 9f38bfdf5549c2757bdfb41b00fa0ee5 { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02224.RNA-Seq.R2_L007.A C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 190208_UNC32-K00270_0145_AH3VHMBBXY_ATCACG_S21_L007_R2_001.fastq.gz 3715042125 FASTQ R2_L007 unaligned CPTAC3 ea76370a-5863-4f4c-bfba-7a6be029d5d6 b74e845b5b79be92c9b14aefbf486687 { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02224.RNA-Seq.transcriptome.A.hg38 C3N-02224 CCRCC RNA-Seq tissue_normal CPT0214150009 c0a52463-5e83-46ec-91b3-f46d5960feea.rna_seq.transcriptome.gdc_realn.bam 8496117420 BAM transcriptome harmonized CPTAC3 ec1012d8-7ccc-4e8d-9f19-68e6c14025d6 e49baf0702ded758d1b4688e82954d33 { 'aliquot_tag': 'ALQ_74b4b7b7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02224.RNA-Seq.transcriptome.T.hg38 C3N-02224 CCRCC RNA-Seq tumor CPT0214120009 1adcea04-8606-4e47-a247-ce74bd176c87.rna_seq.transcriptome.gdc_realn.bam 7739280853 BAM transcriptome harmonized CPTAC3 c40c11cb-e03b-4f04-aac8-42a1722584ca 1ec287bd4259666a04e71926a495ba26 { 'aliquot_tag': 'ALQ_c6946ba7', 'gdc_sample_type': 'Primary Tumor' } C3N-02224.WGS.A C3N-02224 CCRCC WGS tissue_normal CPT0214150006 CPT0214150006.WholeGenome.RP-1303.bam 64303069433 BAM aligned CPTAC3 b5cc2df9-3572-40be-96f2-7e4e50f0a9d6 1fc491fef3ddf45ab45684f27affff1f { 'aliquot_tag': 'ALQ_e40baa26', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02224.WGS.A.hg38 C3N-02224 CCRCC WGS tissue_normal CPT0214150006 8523baa9-3cf1-453a-bcf5-1e010748eccc_wgs_gdc_realn.bam 95656802351 BAM harmonized CPTAC3 ea2742d4-339b-4b7a-8f17-bfd9d77750fd 4db1139943bc371f4249d399a2a70857 { 'aliquot_tag': 'ALQ_e40baa26', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02224.WGS.N C3N-02224 CCRCC WGS blood_normal CPT0214230002 CPT0214230002.WholeGenome.RP-1303.bam 52756668379 BAM aligned CPTAC3 6d565095-88ea-41da-97c4-a09f9a8d0810 e1c0435d0fe11f6b80b521e994744b0a { 'aliquot_tag': 'ALQ_eab2e931', 'gdc_sample_type': 'Blood Derived Normal' } @@ -29866,16 +31949,16 @@ C3N-02230.miRNA-Seq.A C3N-02230 LUAD miRNA-Seq tissue_normal CPT0214330009 19013 C3N-02230.miRNA-Seq.A.hg38 C3N-02230 LUAD miRNA-Seq tissue_normal CPT0214330009 dc3aa98b-bd0c-4524-90c0-c821070aebd1_mirnaseq_gdc_realn.bam 250456100 BAM harmonized CPTAC3 642de1c3-2f39-4620-9063-17b51b23d6f0 54d4fda4cb9525c5e718da7b9633299e { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02230.miRNA-Seq.T C3N-02230 LUAD miRNA-Seq tumor CPT0214290006 190130_UNC31-K00269_0188_BH2FGCBBXY_ATTCCT_S30_L007_R1_001.unaln.bam 232848664 BAM unaligned CPTAC3 0a5eaeed-6b72-4ca7-b863-a5edc3106578 c61ba5c6ff46de167b52f891a283b369 { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor' } C3N-02230.miRNA-Seq.T.hg38 C3N-02230 LUAD miRNA-Seq tumor CPT0214290006 cd6cc107-a802-4ce3-b883-ea7a662ef16a_mirnaseq_gdc_realn.bam 251480031 BAM harmonized CPTAC3 b84ec850-cee3-450d-8c1c-a245d5d8d733 5f7443b0d636b7a146664601413ec0ed { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor' } -C3N-02230.RNA-Seq.chimeric.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 035052ab-b50a-431e-af26-45960a6c7343.rna_seq.chimeric.gdc_realn.bam 47155353 BAM chimeric harmonized CPTAC3 f1db8b5f-c07d-4a8d-8698-f57e5d31ec7e 9e5a4ffe0ba867679e50ac095e1910a4 { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02230.RNA-Seq.chimeric.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 65f634f6-1712-4ebd-8c78-76fe0a32ddf5.rna_seq.chimeric.gdc_realn.bam 44353899 BAM chimeric harmonized CPTAC3 88de5e6b-e4d3-48d1-b4d1-543e360d3ec5 ab11332d241e86e9eb6403890ba6c450 { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor' } -C3N-02230.RNA-Seq.genomic.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 035052ab-b50a-431e-af26-45960a6c7343.rna_seq.genomic.gdc_realn.bam 7815218255 BAM genomic harmonized CPTAC3 cb0f223c-1eb3-4181-a71e-193c7198e6b8 2b9c941be4643ec2f00cf39ac58ae086 { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02230.RNA-Seq.genomic.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 65f634f6-1712-4ebd-8c78-76fe0a32ddf5.rna_seq.genomic.gdc_realn.bam 8472493284 BAM genomic harmonized CPTAC3 ed1abbda-110f-4812-b333-8786b7bd42c8 bc1d906c3e8985cdb9740fd7ee139e2f { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor' } -C3N-02230.RNA-Seq.R1_L003.A C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTCCGC_S9_L003_R1_001.fastq.gz 3545833130 FASTQ R1_L003 unaligned CPTAC3 fe5e3182-e8d0-4fb4-80de-ccc730cbc497 c93a577c8ea476838482f8e000d2aad8 { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02230.RNA-Seq.R1_L006.T C3N-02230 LUAD RNA-Seq tumor CPT0214290006 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L006_R1_001.fastq.gz 3583343869 FASTQ R1_L006 unaligned CPTAC3 5a8ee235-0c16-4ecc-834c-90a3ebdee4f1 a23cfbde57599ff12b5a8dd04b64c860 { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor' } -C3N-02230.RNA-Seq.R2_L003.A C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTCCGC_S9_L003_R2_001.fastq.gz 3732130630 FASTQ R2_L003 unaligned CPTAC3 b3d5e8f8-aa21-47aa-95ab-be1bd2b346d2 9f38eb8957d0d6095229367512dd5d1b { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02230.RNA-Seq.R2_L006.T C3N-02230 LUAD RNA-Seq tumor CPT0214290006 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L006_R2_001.fastq.gz 4025728760 FASTQ R2_L006 unaligned CPTAC3 ce0bfc02-22b9-40b9-b5d5-76ca5390a92f 4979777d794bc011977011a8c16adedb { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor' } -C3N-02230.RNA-Seq.transcriptome.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 035052ab-b50a-431e-af26-45960a6c7343.rna_seq.transcriptome.gdc_realn.bam 7761120044 BAM transcriptome harmonized CPTAC3 7d7230fe-ea96-4264-b578-6a081c86e377 161db639772be028796775ebe5b46016 { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02230.RNA-Seq.transcriptome.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 65f634f6-1712-4ebd-8c78-76fe0a32ddf5.rna_seq.transcriptome.gdc_realn.bam 7939376575 BAM transcriptome harmonized CPTAC3 37d199c6-e7b6-48c9-8e01-547b7594bdae f133a1aa84c12d46299b6f4313905a41 { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor' } +C3N-02230.RNA-Seq.chimeric.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 9d6e5eb9-b0a4-4017-9507-a51e875ba13f.rna_seq.chimeric.gdc_realn.bam 47138486 BAM chimeric harmonized CPTAC3 7849a20f-b265-42c8-9e86-72ff060accdf e8726f6827f185f643fc82d74ad5d02d { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02230.RNA-Seq.chimeric.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 a8084546-1aa8-4383-805b-684f19cd2625.rna_seq.chimeric.gdc_realn.bam 44352787 BAM chimeric harmonized CPTAC3 77526edc-0905-437a-9cf8-0f4d58418e31 cc7b31b7cd1a8a8fe51f474c824184c3 { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor' } +C3N-02230.RNA-Seq.genomic.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 9d6e5eb9-b0a4-4017-9507-a51e875ba13f.rna_seq.genomic.gdc_realn.bam 7816325706 BAM genomic harmonized CPTAC3 aabe5f02-c8d9-4c44-80a9-3d455135447a 4803bc5d0782b4f78f7e59f2db00d8fd { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02230.RNA-Seq.genomic.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 a8084546-1aa8-4383-805b-684f19cd2625.rna_seq.genomic.gdc_realn.bam 8473945011 BAM genomic harmonized CPTAC3 9076a0d3-32b6-4cfc-a755-153ebe972b7c 4cc6a661b6c8bbc2b29b4f41fa77538b { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor' } +C3N-02230.RNA-Seq.R1_L003.A C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTCCGC_S9_L003_R1_001.fastq.gz 3545833130 FASTQ R1_L003 unaligned CPTAC3 fe5e3182-e8d0-4fb4-80de-ccc730cbc497 c93a577c8ea476838482f8e000d2aad8 { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02230.RNA-Seq.R1_L006.T C3N-02230 LUAD RNA-Seq tumor CPT0214290006 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L006_R1_001.fastq.gz 3583343869 FASTQ R1_L006 unaligned CPTAC3 5a8ee235-0c16-4ecc-834c-90a3ebdee4f1 a23cfbde57599ff12b5a8dd04b64c860 { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02230.RNA-Seq.R2_L003.A C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTCCGC_S9_L003_R2_001.fastq.gz 3732130630 FASTQ R2_L003 unaligned CPTAC3 b3d5e8f8-aa21-47aa-95ab-be1bd2b346d2 9f38eb8957d0d6095229367512dd5d1b { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02230.RNA-Seq.R2_L006.T C3N-02230 LUAD RNA-Seq tumor CPT0214290006 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L006_R2_001.fastq.gz 4025728760 FASTQ R2_L006 unaligned CPTAC3 ce0bfc02-22b9-40b9-b5d5-76ca5390a92f 4979777d794bc011977011a8c16adedb { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02230.RNA-Seq.transcriptome.A.hg38 C3N-02230 LUAD RNA-Seq tissue_normal CPT0214330009 9d6e5eb9-b0a4-4017-9507-a51e875ba13f.rna_seq.transcriptome.gdc_realn.bam 8801447301 BAM transcriptome harmonized CPTAC3 76622706-ac9a-4424-bed0-850b361a8797 46465ec757001320ae86af5d076294f3 { 'aliquot_tag': 'ALQ_b63ce31c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02230.RNA-Seq.transcriptome.T.hg38 C3N-02230 LUAD RNA-Seq tumor CPT0214290006 a8084546-1aa8-4383-805b-684f19cd2625.rna_seq.transcriptome.gdc_realn.bam 8883438383 BAM transcriptome harmonized CPTAC3 e8a5724e-b234-4eba-8b86-77596ea256bf d48fcf7146f011c73efbaa4cb48c3eca { 'aliquot_tag': 'ALQ_a76f3589', 'gdc_sample_type': 'Primary Tumor' } C3N-02230.WGS.N C3N-02230 LUAD WGS blood_normal CPT0214410002 CPT0214410002.WholeGenome.RP-1303.bam 61512559977 BAM aligned CPTAC3 55f9f52f-abcc-415f-9b30-33a0e5fae374 93831936292e3267cc3db8793aa4cba8 { 'aliquot_tag': 'ALQ_462b594c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02230.WGS.N.hg38 C3N-02230 LUAD WGS blood_normal CPT0214410002 0ca57ed0-a023-470f-99a0-c306ca740abc_wgs_gdc_realn.bam 90656504077 BAM harmonized CPTAC3 ddf66698-6201-4fd5-9de4-64ba989609e7 253b3426365aaa7ed9873ae3773aa041 { 'aliquot_tag': 'ALQ_462b594c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02230.WGS.T C3N-02230 LUAD WGS tumor CPT0214290009 CPT0214290009.WholeGenome.RP-1303.bam 57204007092 BAM aligned CPTAC3 cfa52a9d-4acc-4d3a-8b11-4c9cee742382 dd0d34afbdf4cccee6eebcc6dae85337 { 'aliquot_tag': 'ALQ_37d02818', 'gdc_sample_type': 'Primary Tumor' } @@ -29894,16 +31977,16 @@ C3N-02234.miRNA-Seq.A C3N-02234 LUAD miRNA-Seq tissue_normal CPT0214690009 19013 C3N-02234.miRNA-Seq.A.hg38 C3N-02234 LUAD miRNA-Seq tissue_normal CPT0214690009 b5288be2-a09b-4705-a8c5-b81f02432ffa_mirnaseq_gdc_realn.bam 178754100 BAM harmonized CPTAC3 5750c618-aa3d-4331-bf46-f4fe5429589d aca987383c747ba2445dfa5959810bad { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02234.miRNA-Seq.T C3N-02234 LUAD miRNA-Seq tumor CPT0214650006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAAAAG_S22_L007_R1_001.unaln.bam 260084856 BAM unaligned CPTAC3 7d2868f9-9e70-4998-ae20-1cf034e606e1 cd3c1517e0c2569d8041d8b4c7a75c85 { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor' } C3N-02234.miRNA-Seq.T.hg38 C3N-02234 LUAD miRNA-Seq tumor CPT0214650006 02bb5bc8-7889-46a7-9113-84f69a337a64_mirnaseq_gdc_realn.bam 283345623 BAM harmonized CPTAC3 0eb8c77a-9cde-4293-bc7c-060639471393 72908d635a34233b267a54d28a0863e4 { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02234.RNA-Seq.chimeric.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 f9d91a96-919c-4cb0-9053-641620e84a79.rna_seq.chimeric.gdc_realn.bam 36258281 BAM chimeric harmonized CPTAC3 e74e47c7-cc3a-4730-9141-ed1b4d2add7f d109b7395d44aacc851c9b74ccb3047e { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02234.RNA-Seq.chimeric.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 7584afa1-c334-4320-91ee-579892df1e94.rna_seq.chimeric.gdc_realn.bam 52402902 BAM chimeric harmonized CPTAC3 26f951a7-35ab-4dac-b567-e9021ba0f625 fe626f0c0ffb9245e810fbe4a995da7e { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02234.RNA-Seq.genomic.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 f9d91a96-919c-4cb0-9053-641620e84a79.rna_seq.genomic.gdc_realn.bam 7292423772 BAM genomic harmonized CPTAC3 50ae926e-cf1e-43f4-921c-875765c448ed 852384f6eaa694d107bef55ce94e68cf { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02234.RNA-Seq.genomic.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 7584afa1-c334-4320-91ee-579892df1e94.rna_seq.genomic.gdc_realn.bam 10849801425 BAM genomic harmonized CPTAC3 2e53fd22-bfc7-4da6-ba66-c5c74c6df474 77e771f3ca2df7ab472d845457cc6685 { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02234.RNA-Seq.R1_L003.A C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGAAA_S11_L003_R1_001.fastq.gz 3516106052 FASTQ R1_L003 unaligned CPTAC3 4a6243fe-d07c-4b4c-a535-b8d2fcc0ca8e 39b5ffee73996ea864eea2359cf4074e { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02234.RNA-Seq.R1_L008.T C3N-02234 LUAD RNA-Seq tumor CPT0214650006 190201_UNC31-K00269_0190_BH3LFKBBXY_TGACCA_S24_L008_R1_001.fastq.gz 4822647499 FASTQ R1_L008 unaligned CPTAC3 d8d65877-975f-41b9-9cad-765a66ee833b c1c0adfe4d60b930fff512931822da48 { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02234.RNA-Seq.R2_L003.A C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGAAA_S11_L003_R2_001.fastq.gz 3526251602 FASTQ R2_L003 unaligned CPTAC3 b0d03a2f-f12e-485b-a75c-3616eaf5e300 58396b03ab7d5d67370c37c1af56abd7 { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02234.RNA-Seq.R2_L008.T C3N-02234 LUAD RNA-Seq tumor CPT0214650006 190201_UNC31-K00269_0190_BH3LFKBBXY_TGACCA_S24_L008_R2_001.fastq.gz 5178574775 FASTQ R2_L008 unaligned CPTAC3 b4a027e3-051a-4c29-abad-353feacb037f bb8ebdbdff347dc0cfc261a4cf34e185 { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02234.RNA-Seq.transcriptome.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 f9d91a96-919c-4cb0-9053-641620e84a79.rna_seq.transcriptome.gdc_realn.bam 7260034960 BAM transcriptome harmonized CPTAC3 54263d7b-a071-494f-9f36-a69e3527ad73 440285435727eb7bade17feadb31c9b9 { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02234.RNA-Seq.transcriptome.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 7584afa1-c334-4320-91ee-579892df1e94.rna_seq.transcriptome.gdc_realn.bam 11528488217 BAM transcriptome harmonized CPTAC3 93064b23-bb83-4065-b4da-fdc6cf319767 6a705ab4fc00b7b0f589950562dd4df7 { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02234.RNA-Seq.chimeric.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 725f58ae-5424-41d2-b673-015eaf8a35ed.rna_seq.chimeric.gdc_realn.bam 36262698 BAM chimeric harmonized CPTAC3 cd54dfb5-01af-4d96-9eaa-e647e48daa1d 11a5662f3ed2b24e24cdfc7770221706 { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02234.RNA-Seq.chimeric.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 ac1028f4-f9fa-4bf3-9545-4d75d1761527.rna_seq.chimeric.gdc_realn.bam 52397823 BAM chimeric harmonized CPTAC3 9efd5106-9cf3-40c4-aafe-071ce91fc0c4 fca55abbb0755e5509cf5ad3e701934c { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02234.RNA-Seq.genomic.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 725f58ae-5424-41d2-b673-015eaf8a35ed.rna_seq.genomic.gdc_realn.bam 7293590106 BAM genomic harmonized CPTAC3 060bfeae-e166-458c-8180-39c11cc6d134 45b6924e20b28f368d6d0d215cb837fd { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02234.RNA-Seq.genomic.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 ac1028f4-f9fa-4bf3-9545-4d75d1761527.rna_seq.genomic.gdc_realn.bam 10851062794 BAM genomic harmonized CPTAC3 6302768d-195c-46d6-8bd1-682c876d52ff 27addf115bd7c336883e84bb89b06b63 { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02234.RNA-Seq.R1_L003.A C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGAAA_S11_L003_R1_001.fastq.gz 3516106052 FASTQ R1_L003 unaligned CPTAC3 4a6243fe-d07c-4b4c-a535-b8d2fcc0ca8e 39b5ffee73996ea864eea2359cf4074e { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02234.RNA-Seq.R1_L008.T C3N-02234 LUAD RNA-Seq tumor CPT0214650006 190201_UNC31-K00269_0190_BH3LFKBBXY_TGACCA_S24_L008_R1_001.fastq.gz 4822647499 FASTQ R1_L008 unaligned CPTAC3 d8d65877-975f-41b9-9cad-765a66ee833b c1c0adfe4d60b930fff512931822da48 { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02234.RNA-Seq.R2_L003.A C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 190123_UNC31-K00269_0183_BH3L7LBBXY_GTGAAA_S11_L003_R2_001.fastq.gz 3526251602 FASTQ R2_L003 unaligned CPTAC3 b0d03a2f-f12e-485b-a75c-3616eaf5e300 58396b03ab7d5d67370c37c1af56abd7 { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02234.RNA-Seq.R2_L008.T C3N-02234 LUAD RNA-Seq tumor CPT0214650006 190201_UNC31-K00269_0190_BH3LFKBBXY_TGACCA_S24_L008_R2_001.fastq.gz 5178574775 FASTQ R2_L008 unaligned CPTAC3 b4a027e3-051a-4c29-abad-353feacb037f bb8ebdbdff347dc0cfc261a4cf34e185 { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02234.RNA-Seq.transcriptome.A.hg38 C3N-02234 LUAD RNA-Seq tissue_normal CPT0214690009 725f58ae-5424-41d2-b673-015eaf8a35ed.rna_seq.transcriptome.gdc_realn.bam 8191564453 BAM transcriptome harmonized CPTAC3 45f05bf1-6dc8-4fdd-a95c-453860328810 3ea49380cfa6c496578ebafb67195221 { 'aliquot_tag': 'ALQ_ac416a0e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02234.RNA-Seq.transcriptome.T.hg38 C3N-02234 LUAD RNA-Seq tumor CPT0214650006 ac1028f4-f9fa-4bf3-9545-4d75d1761527.rna_seq.transcriptome.gdc_realn.bam 12992602438 BAM transcriptome harmonized CPTAC3 56b1eaf0-cd86-4109-a239-dd7e6401ddd0 312a6df0ad5fe4f01a20e7b966d0ff82 { 'aliquot_tag': 'ALQ_f90e9a9e', 'gdc_sample_type': 'Primary Tumor' } C3N-02234.WGS.N C3N-02234 LUAD WGS blood_normal CPT0214770002 CPT0214770002.WholeGenome.RP-1303.bam 64248195161 BAM aligned CPTAC3 49dfba8f-4dbd-4a0d-b430-136ca38f26e1 acaefb05946798f203134821b11e8798 { 'aliquot_tag': 'ALQ_4fffde42', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02234.WGS.N.hg38 C3N-02234 LUAD WGS blood_normal CPT0214770002 6838033f-fe05-4921-b81c-a2b133e8af47_wgs_gdc_realn.bam 95179674878 BAM harmonized CPTAC3 255c1318-cee3-4bdf-80aa-a707cda68799 908fc7a95123189aa25dcad61aa91476 { 'aliquot_tag': 'ALQ_4fffde42', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02234.WGS.T C3N-02234 LUAD WGS tumor CPT0214650009 CPT0214650009.WholeGenome.RP-1303.bam 58947993796 BAM aligned CPTAC3 4fcdb262-8789-4088-aaf7-3efed8935c8d 93f61d9afb685020e512e2a676d309b8 { 'aliquot_tag': 'ALQ_69b1870f', 'gdc_sample_type': 'Primary Tumor' } @@ -29922,16 +32005,16 @@ C3N-02237.miRNA-Seq.A C3N-02237 LUAD miRNA-Seq tissue_normal CPT0214870009 19013 C3N-02237.miRNA-Seq.A.hg38 C3N-02237 LUAD miRNA-Seq tissue_normal CPT0214870009 85443e0a-0303-4be2-a95c-8315dbff2564_mirnaseq_gdc_realn.bam 270961789 BAM harmonized CPTAC3 914f712d-949c-4b87-b8ed-847799585b35 d3b4a84a5170df53f84459bee05c24a5 { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02237.miRNA-Seq.T C3N-02237 LUAD miRNA-Seq tumor CPT0214850006 190130_UNC31-K00269_0188_BH2FGCBBXY_CAACTA_S31_L007_R1_001.unaln.bam 250449063 BAM unaligned CPTAC3 02da7fe9-e41e-4565-89be-e4b6e67b6c5d b45695ccc757c40ba93659b9374125f2 { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor' } C3N-02237.miRNA-Seq.T.hg38 C3N-02237 LUAD miRNA-Seq tumor CPT0214850006 b5e3da67-3fc9-45b1-ad88-f8f2a5922504_mirnaseq_gdc_realn.bam 280042325 BAM harmonized CPTAC3 8bfae102-6f17-4766-a653-787f12f88192 d0d8bd88b95db0ce8ae0fb2269812dec { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor' } -C3N-02237.RNA-Seq.chimeric.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 18eb6303-70df-4482-801e-df1a7700e6f0.rna_seq.chimeric.gdc_realn.bam 28996227 BAM chimeric harmonized CPTAC3 50f5b524-c8bf-4de3-801e-761fc3db25e5 00614b9754ca8f187fac74548b106387 { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02237.RNA-Seq.chimeric.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 9d67c592-e9fc-4bfd-8b63-e33a0cda2deb.rna_seq.chimeric.gdc_realn.bam 43824551 BAM chimeric harmonized CPTAC3 e6ff46d6-5592-4368-8486-af56a1976a1b 8b07bf29ae0bf3fdaa1e20c56e9c0e0b { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor' } -C3N-02237.RNA-Seq.genomic.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 18eb6303-70df-4482-801e-df1a7700e6f0.rna_seq.genomic.gdc_realn.bam 7009372390 BAM genomic harmonized CPTAC3 7332a8ca-7f76-4a19-a293-48985f3b1336 ff9d1b10c38dbd434811fadba6b7ff1c { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02237.RNA-Seq.genomic.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 9d67c592-e9fc-4bfd-8b63-e33a0cda2deb.rna_seq.genomic.gdc_realn.bam 10607988864 BAM genomic harmonized CPTAC3 7cdee2da-abe5-4818-8658-0a69175b5a42 f712035c231a1040bc16f1e6ec42d53a { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor' } -C3N-02237.RNA-Seq.R1_L001.T C3N-02237 LUAD RNA-Seq tumor CPT0214850006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4145298042 FASTQ R1_L001 unaligned CPTAC3 887287bb-d678-44ff-853b-8cbf65ef6c06 0f55cefea5e9620ba195c98a1cd23932 { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor' } -C3N-02237.RNA-Seq.R1_L005.A C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 190123_UNC31-K00269_0183_BH3L7LBBXY_TGACCA_S20_L005_R1_001.fastq.gz 3173490335 FASTQ R1_L005 unaligned CPTAC3 694de9e3-b42e-4ede-a897-d7343fec5ba7 b3ea96c2bed3bdd6bdb4d6bf7711a64a { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02237.RNA-Seq.R2_L001.T C3N-02237 LUAD RNA-Seq tumor CPT0214850006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 4554668625 FASTQ R2_L001 unaligned CPTAC3 86e384ef-8b7b-4be6-b4f6-d0a2b9451c11 622681ed03094eea86670a84d3f78a9a { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor' } -C3N-02237.RNA-Seq.R2_L005.A C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 190123_UNC31-K00269_0183_BH3L7LBBXY_TGACCA_S20_L005_R2_001.fastq.gz 3261569211 FASTQ R2_L005 unaligned CPTAC3 7548401e-d472-4466-8b44-75e0fac2d182 91f8ceafb0f478906ab184f31598bdf5 { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02237.RNA-Seq.transcriptome.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 18eb6303-70df-4482-801e-df1a7700e6f0.rna_seq.transcriptome.gdc_realn.bam 7241785275 BAM transcriptome harmonized CPTAC3 dba95f60-e2c1-4bdb-8191-7fa0630a71d7 198cb03bc136d7f09cbdf3ed5dd540bc { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02237.RNA-Seq.transcriptome.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 9d67c592-e9fc-4bfd-8b63-e33a0cda2deb.rna_seq.transcriptome.gdc_realn.bam 9541279729 BAM transcriptome harmonized CPTAC3 fad04e81-1ad5-4e05-92da-68f08fe24e8b dd6116933eae6bb2a4a0d663377fd6f6 { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor' } +C3N-02237.RNA-Seq.chimeric.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 c6403bcd-92ba-4236-a376-9a32c9a9516e.rna_seq.chimeric.gdc_realn.bam 28983096 BAM chimeric harmonized CPTAC3 6716a8ab-f524-4357-bd0f-143361bb04f9 b869ab13cc5b2245d02d97ebacb67c0e { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02237.RNA-Seq.chimeric.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 a9c8dbe5-d88f-4ea0-bac3-bca4ff419cb4.rna_seq.chimeric.gdc_realn.bam 43819249 BAM chimeric harmonized CPTAC3 39f7ef15-8059-4d2c-bb0d-fefbdc9b0a04 5636ac2b1035598b9559b3de80ecbc76 { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor' } +C3N-02237.RNA-Seq.genomic.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 c6403bcd-92ba-4236-a376-9a32c9a9516e.rna_seq.genomic.gdc_realn.bam 7010441550 BAM genomic harmonized CPTAC3 2f4fb183-06ad-4217-9116-1bdfadb48070 abfe5f0b395aea8ed7bdc67e9dfd2854 { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02237.RNA-Seq.genomic.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 a9c8dbe5-d88f-4ea0-bac3-bca4ff419cb4.rna_seq.genomic.gdc_realn.bam 10609456850 BAM genomic harmonized CPTAC3 135b914c-5a52-4307-9729-b17d4a295f18 0ae02d648b1225263b06a820c94ac67d { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor' } +C3N-02237.RNA-Seq.R1_L001.T C3N-02237 LUAD RNA-Seq tumor CPT0214850006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4145298042 FASTQ R1_L001 unaligned CPTAC3 887287bb-d678-44ff-853b-8cbf65ef6c06 0f55cefea5e9620ba195c98a1cd23932 { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02237.RNA-Seq.R1_L005.A C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 190123_UNC31-K00269_0183_BH3L7LBBXY_TGACCA_S20_L005_R1_001.fastq.gz 3173490335 FASTQ R1_L005 unaligned CPTAC3 694de9e3-b42e-4ede-a897-d7343fec5ba7 b3ea96c2bed3bdd6bdb4d6bf7711a64a { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02237.RNA-Seq.R2_L001.T C3N-02237 LUAD RNA-Seq tumor CPT0214850006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 4554668625 FASTQ R2_L001 unaligned CPTAC3 86e384ef-8b7b-4be6-b4f6-d0a2b9451c11 622681ed03094eea86670a84d3f78a9a { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02237.RNA-Seq.R2_L005.A C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 190123_UNC31-K00269_0183_BH3L7LBBXY_TGACCA_S20_L005_R2_001.fastq.gz 3261569211 FASTQ R2_L005 unaligned CPTAC3 7548401e-d472-4466-8b44-75e0fac2d182 91f8ceafb0f478906ab184f31598bdf5 { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02237.RNA-Seq.transcriptome.A.hg38 C3N-02237 LUAD RNA-Seq tissue_normal CPT0214870009 c6403bcd-92ba-4236-a376-9a32c9a9516e.rna_seq.transcriptome.gdc_realn.bam 8222068577 BAM transcriptome harmonized CPTAC3 ff8f5c81-343e-40fe-a4d6-b5f21988bbd4 fa04f90aa72260915010ad78490c74c6 { 'aliquot_tag': 'ALQ_297bb51f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02237.RNA-Seq.transcriptome.T.hg38 C3N-02237 LUAD RNA-Seq tumor CPT0214850006 a9c8dbe5-d88f-4ea0-bac3-bca4ff419cb4.rna_seq.transcriptome.gdc_realn.bam 10726415577 BAM transcriptome harmonized CPTAC3 abd12a9b-3b3d-41b0-aa53-22a704b52a39 5e37a71f7e6c311c6b6bf355ef72b49a { 'aliquot_tag': 'ALQ_c304fbee', 'gdc_sample_type': 'Primary Tumor' } C3N-02237.WGS.N C3N-02237 LUAD WGS blood_normal CPT0214950002 CPT0214950002.WholeGenome.RP-1303.bam 66258961744 BAM aligned CPTAC3 46552bba-49e0-456d-aaa1-6de480c7bd9b 2fd33721068803d347946318c7d442b9 { 'aliquot_tag': 'ALQ_f35ec52', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02237.WGS.N.hg38 C3N-02237 LUAD WGS blood_normal CPT0214950002 2b7774ec-ce17-443d-9dc1-b87fa63e7c6c_wgs_gdc_realn.bam 98947404000 BAM harmonized CPTAC3 5bad7877-9282-4204-b341-5ae262074565 b7058561262f4b4b5621ea8e7203583b { 'aliquot_tag': 'ALQ_f35ec52', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02237.WGS.T C3N-02237 LUAD WGS tumor CPT0214850009 CPT0214850009.WholeGenome.RP-1303.bam 60980293132 BAM aligned CPTAC3 321d69bd-6a56-4f18-8c20-5c3fd6be132c 8c9e453a81a5dd2c74eb4d8bd5b4e5d5 { 'aliquot_tag': 'ALQ_53bbe67f', 'gdc_sample_type': 'Primary Tumor' } @@ -29950,16 +32033,16 @@ C3N-02240.miRNA-Seq.A C3N-02240 LUAD miRNA-Seq tissue_normal CPT0215230009 19013 C3N-02240.miRNA-Seq.A.hg38 C3N-02240 LUAD miRNA-Seq tissue_normal CPT0215230009 24cb48ed-97cf-4f19-8668-37c8b06b52f9_mirnaseq_gdc_realn.bam 257206873 BAM harmonized CPTAC3 75b2b73e-de62-47ef-b0d2-78e97763001c b6fcf409c37cbd9e4f88e51daccf41e8 { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02240.miRNA-Seq.T C3N-02240 LUAD miRNA-Seq tumor CPT0215210006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACCGG_S32_L007_R1_001.unaln.bam 236529473 BAM unaligned CPTAC3 a0e02d30-742a-42cc-84ed-a4ad7e47795c c74ec1e924944be4d302cba9b37c663f { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor' } C3N-02240.miRNA-Seq.T.hg38 C3N-02240 LUAD miRNA-Seq tumor CPT0215210006 5fd95431-d397-4566-aba7-85e7b725b0f4_mirnaseq_gdc_realn.bam 257499440 BAM harmonized CPTAC3 9ea0c535-3300-4bd9-812b-b8ebf5868841 9717589ad6eefc6c2ad53cc01685e882 { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02240.RNA-Seq.chimeric.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 b3d5f6d5-80d5-48b1-a012-fceaffcb018d.rna_seq.chimeric.gdc_realn.bam 37105832 BAM chimeric harmonized CPTAC3 560f3f17-0fea-4704-a52e-61b8dc15979d 59457eb15a211e511fb3a2c711139a80 { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02240.RNA-Seq.chimeric.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 59b00be8-bb5c-405e-879c-3778fcfa9091.rna_seq.chimeric.gdc_realn.bam 46469991 BAM chimeric harmonized CPTAC3 db295c98-3401-4a96-9496-26b04366a760 65271e4184e4388dee1bdb3061d4fb76 { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02240.RNA-Seq.genomic.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 b3d5f6d5-80d5-48b1-a012-fceaffcb018d.rna_seq.genomic.gdc_realn.bam 8774881114 BAM genomic harmonized CPTAC3 b7c8ac08-4659-4769-a43c-026e4f1a1838 006035516ee1ffd5a47d465d4943d733 { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02240.RNA-Seq.genomic.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 59b00be8-bb5c-405e-879c-3778fcfa9091.rna_seq.genomic.gdc_realn.bam 10112987148 BAM genomic harmonized CPTAC3 d96b0ca3-989c-4a8a-a356-bd4681bc19f4 883528e0e75f00dbb9426a37cc611ec0 { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02240.RNA-Seq.R1_L001.T C3N-02240 LUAD RNA-Seq tumor CPT0215210006 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 4259265998 FASTQ R1_L001 unaligned CPTAC3 8937d276-3c0e-41d5-bdf7-1fced441027f 93871aed801e11740ae96b4ac0ed78f3 { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02240.RNA-Seq.R1_L006.A C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 4000778700 FASTQ R1_L006 unaligned CPTAC3 86b9c3b7-2f71-4b57-8630-96d33bfcb9f1 328f2ca1e1b65a53b2c69cde66a05d4b { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02240.RNA-Seq.R2_L001.T C3N-02240 LUAD RNA-Seq tumor CPT0215210006 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 4743230676 FASTQ R2_L001 unaligned CPTAC3 9c59f9b1-b728-45eb-93af-e895ae90be4b 932c8bf36863d3fb052333540fa772e0 { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02240.RNA-Seq.R2_L006.A C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 4291228392 FASTQ R2_L006 unaligned CPTAC3 f70ff136-b424-455d-a3f1-20b768878332 24ca4d23534788eb1a8e0ee53b8e149d { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02240.RNA-Seq.transcriptome.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 b3d5f6d5-80d5-48b1-a012-fceaffcb018d.rna_seq.transcriptome.gdc_realn.bam 9228061200 BAM transcriptome harmonized CPTAC3 a569d6b6-df95-4739-a266-1e735428f301 d3a8c9e1e01d140ffcbfa714305f33a1 { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02240.RNA-Seq.transcriptome.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 59b00be8-bb5c-405e-879c-3778fcfa9091.rna_seq.transcriptome.gdc_realn.bam 10510624728 BAM transcriptome harmonized CPTAC3 0dd728fe-055e-4cec-b572-4f7358e4b198 506f36345ee20bfb5e4b11c21794ecf5 { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02240.RNA-Seq.chimeric.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 900118b4-42e6-4190-8d8f-204d7c8c9075.rna_seq.chimeric.gdc_realn.bam 37094708 BAM chimeric harmonized CPTAC3 65a25fb7-4887-46d8-abaa-0d49f41172f1 42437e4f3b1d6b4df5f9ccdedf73cee2 { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02240.RNA-Seq.chimeric.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 28b3b229-8761-4556-b810-0d4ad1af68f0.rna_seq.chimeric.gdc_realn.bam 46471924 BAM chimeric harmonized CPTAC3 b0744ba4-0d3f-4b98-996a-9d737b3f2404 caac02d1618c3c972631fc1b990cde1b { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02240.RNA-Seq.genomic.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 900118b4-42e6-4190-8d8f-204d7c8c9075.rna_seq.genomic.gdc_realn.bam 8776218197 BAM genomic harmonized CPTAC3 2ebbc498-3b9e-4bcb-bec0-d2368dcc4895 d327bbd39dc163620e3bc307cab68e7d { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02240.RNA-Seq.genomic.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 28b3b229-8761-4556-b810-0d4ad1af68f0.rna_seq.genomic.gdc_realn.bam 10112960694 BAM genomic harmonized CPTAC3 1c37a978-06ca-46eb-9d55-4933c73894bc 4050bc29dec1b4b58008d2e22813f337 { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02240.RNA-Seq.R1_L001.T C3N-02240 LUAD RNA-Seq tumor CPT0215210006 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 4259265998 FASTQ R1_L001 unaligned CPTAC3 8937d276-3c0e-41d5-bdf7-1fced441027f 93871aed801e11740ae96b4ac0ed78f3 { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02240.RNA-Seq.R1_L006.A C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 4000778700 FASTQ R1_L006 unaligned CPTAC3 86b9c3b7-2f71-4b57-8630-96d33bfcb9f1 328f2ca1e1b65a53b2c69cde66a05d4b { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02240.RNA-Seq.R2_L001.T C3N-02240 LUAD RNA-Seq tumor CPT0215210006 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 4743230676 FASTQ R2_L001 unaligned CPTAC3 9c59f9b1-b728-45eb-93af-e895ae90be4b 932c8bf36863d3fb052333540fa772e0 { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02240.RNA-Seq.R2_L006.A C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 4291228392 FASTQ R2_L006 unaligned CPTAC3 f70ff136-b424-455d-a3f1-20b768878332 24ca4d23534788eb1a8e0ee53b8e149d { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02240.RNA-Seq.transcriptome.A.hg38 C3N-02240 LUAD RNA-Seq tissue_normal CPT0215230009 900118b4-42e6-4190-8d8f-204d7c8c9075.rna_seq.transcriptome.gdc_realn.bam 10497477501 BAM transcriptome harmonized CPTAC3 a0261caf-c6ae-44c8-99ad-685f9d0f4119 09581b40d6fa21e441c8a8f64b53f842 { 'aliquot_tag': 'ALQ_db173b0d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02240.RNA-Seq.transcriptome.T.hg38 C3N-02240 LUAD RNA-Seq tumor CPT0215210006 28b3b229-8761-4556-b810-0d4ad1af68f0.rna_seq.transcriptome.gdc_realn.bam 11840258562 BAM transcriptome harmonized CPTAC3 e30be0e2-9c62-48d3-b0eb-aa61b51637b6 ec628b14e2756eadf35fd0eb370de9db { 'aliquot_tag': 'ALQ_316875fc', 'gdc_sample_type': 'Primary Tumor' } C3N-02240.WGS.N C3N-02240 LUAD WGS blood_normal CPT0215310002 CPT0215310002.WholeGenome.RP-1303.bam 59855236740 BAM aligned CPTAC3 5216c99a-d97a-4904-8ec6-1ff6fe1e6c0c 53a82779c1cf43ca01703366771fe841 { 'aliquot_tag': 'ALQ_fd596240', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02240.WGS.N.hg38 C3N-02240 LUAD WGS blood_normal CPT0215310002 0d11ebdf-9907-4aff-b8a5-97e754c0caeb_wgs_gdc_realn.bam 87600838568 BAM harmonized CPTAC3 dd21ed09-9849-40a8-b0f9-2ad12e71cefb 6298c6df3be976af6dd339557cd90a7c { 'aliquot_tag': 'ALQ_fd596240', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02240.WGS.T C3N-02240 LUAD WGS tumor CPT0215210009 CPT0215210009.WholeGenome.RP-1303.bam 56594142198 BAM aligned CPTAC3 6a22cc53-1e73-4460-b4a5-623e675b4dee 751d8f4329b3d7864e0a0d03051e9ca3 { 'aliquot_tag': 'ALQ_a1d7686d', 'gdc_sample_type': 'Primary Tumor' } @@ -29978,16 +32061,16 @@ C3N-02242.miRNA-Seq.A C3N-02242 LUAD miRNA-Seq tissue_normal CPT0215410009 19013 C3N-02242.miRNA-Seq.A.hg38 C3N-02242 LUAD miRNA-Seq tissue_normal CPT0215410009 e3ac6364-f3d1-48db-bf9a-6ceb4c0f5fe6_mirnaseq_gdc_realn.bam 235475569 BAM harmonized CPTAC3 8769051b-90ef-4109-8edd-3f9871c4b9e2 997e3a8c6a49af92b01a7539372fba75 { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02242.miRNA-Seq.T C3N-02242 LUAD miRNA-Seq tumor CPT0215400006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACGAT_S33_L007_R1_001.unaln.bam 226192584 BAM unaligned CPTAC3 138fa03e-da6e-4780-ab38-179529a3e3c7 c267961ad444c9b9c5d98e228530d11e { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor' } C3N-02242.miRNA-Seq.T.hg38 C3N-02242 LUAD miRNA-Seq tumor CPT0215400006 81dbab21-ea17-4bef-8451-7cb56ecda8e0_mirnaseq_gdc_realn.bam 247139200 BAM harmonized CPTAC3 6e36b948-3529-4522-a993-6a7f2d2db1e9 75794a8ccb3b0708ac19adfcda9ce356 { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor' } -C3N-02242.RNA-Seq.chimeric.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 c1e81c17-2f88-436b-9dad-98495b129fa5.rna_seq.chimeric.gdc_realn.bam 46881656 BAM chimeric harmonized CPTAC3 a994eff1-870a-498f-9ea7-63c45b2dac75 684783d16f7121a637f5792c9aeb37cb { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02242.RNA-Seq.chimeric.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 73666d2e-a38a-48cb-9026-ccd4b2348e20.rna_seq.chimeric.gdc_realn.bam 42857842 BAM chimeric harmonized CPTAC3 7bc23b3a-0359-48b6-aba6-efbde43a6450 4b927b3f2f7f2d3989e37368581f902f { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor' } -C3N-02242.RNA-Seq.genomic.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 c1e81c17-2f88-436b-9dad-98495b129fa5.rna_seq.genomic.gdc_realn.bam 8796239859 BAM genomic harmonized CPTAC3 16e9c7d2-1e36-4028-8c25-ef6fe1a4a9f6 338b67437fcc747295664155f2f0b1b5 { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02242.RNA-Seq.genomic.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 73666d2e-a38a-48cb-9026-ccd4b2348e20.rna_seq.genomic.gdc_realn.bam 8501874420 BAM genomic harmonized CPTAC3 23cf4770-33bc-4aed-8aa8-13fa459f3b00 d6ba26422c469694d57e4d8a1861cef2 { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor' } -C3N-02242.RNA-Seq.R1_L002.A C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 190201_UNC31-K00269_0190_BH3LFKBBXY_TTAGGC_S7_L002_R1_001.fastq.gz 3893573485 FASTQ R1_L002 unaligned CPTAC3 d92f6349-19c6-4d2e-aaa7-df2b50bf8f97 dc6b04f686c42754d761a6fb02c0a464 { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02242.RNA-Seq.R1_L004.T C3N-02242 LUAD RNA-Seq tumor CPT0215400006 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L004_R1_001.fastq.gz 3724389175 FASTQ R1_L004 unaligned CPTAC3 79c4491e-91af-47b6-82a7-2d51e8fbd39c 416b6b1ead7c4f186088b96f446d05be { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor' } -C3N-02242.RNA-Seq.R2_L002.A C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 190201_UNC31-K00269_0190_BH3LFKBBXY_TTAGGC_S7_L002_R2_001.fastq.gz 4362131709 FASTQ R2_L002 unaligned CPTAC3 7b52e55f-d06b-4402-b2a3-b446eecda4eb e6cea890ad8ee54c1ffada4fee16881f { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02242.RNA-Seq.R2_L004.T C3N-02242 LUAD RNA-Seq tumor CPT0215400006 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L004_R2_001.fastq.gz 4097859326 FASTQ R2_L004 unaligned CPTAC3 c933fbca-dc15-4090-8b59-35979f173e0c 12b2c5501652fd115d1d90f0727a4ced { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor' } -C3N-02242.RNA-Seq.transcriptome.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 c1e81c17-2f88-436b-9dad-98495b129fa5.rna_seq.transcriptome.gdc_realn.bam 7963421877 BAM transcriptome harmonized CPTAC3 a0af944a-5dec-4f95-a072-fed56e44f0b8 4388beb26a72130a39d87db921683427 { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02242.RNA-Seq.transcriptome.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 73666d2e-a38a-48cb-9026-ccd4b2348e20.rna_seq.transcriptome.gdc_realn.bam 9436745905 BAM transcriptome harmonized CPTAC3 3404abdf-6e48-4916-8826-f40125536c46 4b3afae1a7279ba576f3c98a7b1672c0 { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor' } +C3N-02242.RNA-Seq.chimeric.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 d91977b1-46fd-4ffb-a732-1117d74558a0.rna_seq.chimeric.gdc_realn.bam 46865174 BAM chimeric harmonized CPTAC3 84c8ec7d-3f30-4ced-894e-9c7f008496c6 c43703f155f94cfc89bfc64c5353e391 { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02242.RNA-Seq.chimeric.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 735ebe28-664d-4dc5-8d86-1e405e0f0756.rna_seq.chimeric.gdc_realn.bam 42850781 BAM chimeric harmonized CPTAC3 067993cb-e672-4bcd-94ef-c8552314c00e 1b71b9622d3e6a1238b78cdcf9349e64 { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor' } +C3N-02242.RNA-Seq.genomic.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 d91977b1-46fd-4ffb-a732-1117d74558a0.rna_seq.genomic.gdc_realn.bam 8797649961 BAM genomic harmonized CPTAC3 56cce741-1398-4821-9bc1-b8f6ada5555c 0fbcda519ac287581b0ab9b3eb142c60 { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02242.RNA-Seq.genomic.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 735ebe28-664d-4dc5-8d86-1e405e0f0756.rna_seq.genomic.gdc_realn.bam 8503337051 BAM genomic harmonized CPTAC3 87d16c6e-9dbb-48ad-9236-018847726be0 ac966a99f8c1aa0b596ff26f7ad9a657 { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor' } +C3N-02242.RNA-Seq.R1_L002.A C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 190201_UNC31-K00269_0190_BH3LFKBBXY_TTAGGC_S7_L002_R1_001.fastq.gz 3893573485 FASTQ R1_L002 unaligned CPTAC3 d92f6349-19c6-4d2e-aaa7-df2b50bf8f97 dc6b04f686c42754d761a6fb02c0a464 { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02242.RNA-Seq.R1_L004.T C3N-02242 LUAD RNA-Seq tumor CPT0215400006 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L004_R1_001.fastq.gz 3724389175 FASTQ R1_L004 unaligned CPTAC3 79c4491e-91af-47b6-82a7-2d51e8fbd39c 416b6b1ead7c4f186088b96f446d05be { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02242.RNA-Seq.R2_L002.A C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 190201_UNC31-K00269_0190_BH3LFKBBXY_TTAGGC_S7_L002_R2_001.fastq.gz 4362131709 FASTQ R2_L002 unaligned CPTAC3 7b52e55f-d06b-4402-b2a3-b446eecda4eb e6cea890ad8ee54c1ffada4fee16881f { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02242.RNA-Seq.R2_L004.T C3N-02242 LUAD RNA-Seq tumor CPT0215400006 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L004_R2_001.fastq.gz 4097859326 FASTQ R2_L004 unaligned CPTAC3 c933fbca-dc15-4090-8b59-35979f173e0c 12b2c5501652fd115d1d90f0727a4ced { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02242.RNA-Seq.transcriptome.A.hg38 C3N-02242 LUAD RNA-Seq tissue_normal CPT0215410009 d91977b1-46fd-4ffb-a732-1117d74558a0.rna_seq.transcriptome.gdc_realn.bam 9018634921 BAM transcriptome harmonized CPTAC3 384990ba-0367-40f9-a971-ca315ecaeaec 160917b3a5acce36805d3bacb0ca050a { 'aliquot_tag': 'ALQ_778e8b70', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02242.RNA-Seq.transcriptome.T.hg38 C3N-02242 LUAD RNA-Seq tumor CPT0215400006 735ebe28-664d-4dc5-8d86-1e405e0f0756.rna_seq.transcriptome.gdc_realn.bam 10583615377 BAM transcriptome harmonized CPTAC3 b09d5509-99f9-497a-ba78-2736e2213f02 22d2074aec839c7a098e0254a817f427 { 'aliquot_tag': 'ALQ_da51bf51', 'gdc_sample_type': 'Primary Tumor' } C3N-02242.WGS.N C3N-02242 LUAD WGS blood_normal CPT0215490002 CPT0215490002.WholeGenome.RP-1303.bam 52041367855 BAM aligned CPTAC3 100f95dc-898a-48da-bdd0-6c2c77df10dc 16090841828b2c9496bf8b43ed99c160 { 'aliquot_tag': 'ALQ_d02c1939', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02242.WGS.N.hg38 C3N-02242 LUAD WGS blood_normal CPT0215490002 7223aa6b-89c1-4dd1-bb0b-924f7940ae8c_wgs_gdc_realn.bam 76640265740 BAM harmonized CPTAC3 7a1a13b5-6f67-4b57-9e4a-a4abc28f1966 6e4b381514546d178e5a9f3ec5442857 { 'aliquot_tag': 'ALQ_d02c1939', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02242.WGS.T C3N-02242 LUAD WGS tumor CPT0215400009 CPT0215400009.WholeGenome.RP-1303.bam 57588960935 BAM aligned CPTAC3 97aa774b-90ca-44c6-8013-78d8fc08afc9 cdef9558b4bd1f64df154a5f19105e90 { 'aliquot_tag': 'ALQ_4aeea2c0', 'gdc_sample_type': 'Primary Tumor' } @@ -30002,13 +32085,16 @@ C3N-02244.MethArray.Green.T C3N-02244 UCEC Methylation Array tumor CPT0128960006 C3N-02244.MethArray.Red.T C3N-02244 UCEC Methylation Array tumor CPT0128960006 203219640133_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 a5a552fc-ea2c-4774-a349-2468404c64a7 632831767644cfaa24444449e9c6e2cc { 'aliquot_tag': 'ALQ_3f5a03c9', 'gdc_sample_type': 'Primary Tumor' } C3N-02244.miRNA-Seq.T C3N-02244 UCEC miRNA-Seq tumor CPT0128960009 190108_UNC31-K00269_0176_AHYGLVBBXX_CCGTCC_S16_L004_R1_001.unaln.bam 261954688 BAM unaligned CPTAC3 dad53e76-942e-4108-8e36-d64f69c41e5b 839e00bff5f4238e7f2cba5e1239a0dd { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor' } C3N-02244.miRNA-Seq.T.hg38 C3N-02244 UCEC miRNA-Seq tumor CPT0128960009 5f915905-2391-4c45-a92f-f8455bfe205c_mirnaseq_gdc_realn.bam 287458899 BAM harmonized CPTAC3 74e61a6a-0454-4318-99b9-b150ad08c31a f42a308c38417d89195e00908383d2e3 { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor' } -C3N-02244.RNA-Seq.chimeric.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 40eebfe8-4209-4132-8095-1642be85e6e4.rna_seq.chimeric.gdc_realn.bam 51515512 BAM chimeric harmonized CPTAC3 9fd96d54-5590-4d89-a57e-73a6bb15809c ae4b80196991e92c8e7de40a58cc8619 { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor' } -C3N-02244.RNA-Seq.genomic.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 40eebfe8-4209-4132-8095-1642be85e6e4.rna_seq.genomic.gdc_realn.bam 9545786152 BAM genomic harmonized CPTAC3 7a4f4a3b-a886-4fc6-a953-9eac67170007 ea3c8b804a1645109431d90314d5408e { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor' } -C3N-02244.RNA-Seq.R1_L004.T C3N-02244 UCEC RNA-Seq tumor CPT0128960009 190115_UNC31-K00269_0179_BH357YBBXY_CCGTCC_S12_L004_R1_001.fastq.gz 4373165706 FASTQ R1_L004 unaligned CPTAC3 97a680a9-c31f-4139-b119-8d1bed262d43 cb7b4caf8963e7b3df4e292194064615 { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor' } -C3N-02244.RNA-Seq.R1_.T C3N-02244 UCEC RNA-Seq tumor CPT0129000001 20210729_P3_E7_WB7988-Plate3_S55_R1_001.fastq.gz 8929658897 FASTQ R1_ unaligned CPTAC3 a95fb7ee-a459-4581-ae0d-c2f2cf028304 3788d9d05ba71b67f268c75586c171e4 { 'aliquot_tag': 'ALQ_af0639b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02244.RNA-Seq.R2_L004.T C3N-02244 UCEC RNA-Seq tumor CPT0128960009 190115_UNC31-K00269_0179_BH357YBBXY_CCGTCC_S12_L004_R2_001.fastq.gz 4465880356 FASTQ R2_L004 unaligned CPTAC3 a7ba3331-3d0c-4a01-a11e-d1b5628c2d1a 611b56558b301522dbbf4d188f4ee60d { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor' } -C3N-02244.RNA-Seq.R2_.T C3N-02244 UCEC RNA-Seq tumor CPT0129000001 20210729_P3_E7_WB7988-Plate3_S55_R2_001.fastq.gz 9324635698 FASTQ R2_ unaligned CPTAC3 1b379483-2be0-4447-a925-5dc1727b685d 3d3f64c680c43e2d5f0f9982c0a2c09c { 'aliquot_tag': 'ALQ_af0639b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02244.RNA-Seq.transcriptome.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 40eebfe8-4209-4132-8095-1642be85e6e4.rna_seq.transcriptome.gdc_realn.bam 8140426417 BAM transcriptome harmonized CPTAC3 df712198-4f97-4098-b943-98637c34ce50 9eae3deb5347295a3270ec4d99f7a498 { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor' } +C3N-02244.RNA-Seq.chimeric.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 513056fe-4acd-4391-bbe9-6b31c6903170.rna_seq.chimeric.gdc_realn.bam 51503873 BAM chimeric harmonized CPTAC3 105509d4-d51f-4e52-b0f6-07601a93fbde 3c1d591abd31af54e3da17a71aed92d2 { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor' } +C3N-02244.RNA-Seq.chimeric.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0129000001 05519ec4-5fca-4ee4-ab6f-2de5d78bd618.rna_seq.chimeric.gdc_realn.bam 272971354 BAM chimeric harmonized CPTAC3 ec163594-7436-4a82-90fa-03f8f8a2b4f3 17d41f436fe488908a44749692c8b9d0 { 'aliquot_tag': 'ALQ_af0639b6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02244.RNA-Seq.genomic.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 513056fe-4acd-4391-bbe9-6b31c6903170.rna_seq.genomic.gdc_realn.bam 9547138330 BAM genomic harmonized CPTAC3 5c0a32ca-ab5b-4bd9-bfd8-7c0813628129 3e37fea55c3f4a4de96a381845bab97f { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor' } +C3N-02244.RNA-Seq.genomic.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0129000001 05519ec4-5fca-4ee4-ab6f-2de5d78bd618.rna_seq.genomic.gdc_realn.bam 15803971428 BAM genomic harmonized CPTAC3 7041a013-e495-4fce-9b7b-7cdd77459f95 a375d8fc0c3a6ec655f024c6d705e5b4 { 'aliquot_tag': 'ALQ_af0639b6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02244.RNA-Seq.R1_L004.T C3N-02244 UCEC RNA-Seq tumor CPT0128960009 190115_UNC31-K00269_0179_BH357YBBXY_CCGTCC_S12_L004_R1_001.fastq.gz 4373165706 FASTQ R1_L004 unaligned CPTAC3 97a680a9-c31f-4139-b119-8d1bed262d43 cb7b4caf8963e7b3df4e292194064615 { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02244.RNA-Seq.R2_L004.T C3N-02244 UCEC RNA-Seq tumor CPT0128960009 190115_UNC31-K00269_0179_BH357YBBXY_CCGTCC_S12_L004_R2_001.fastq.gz 4465880356 FASTQ R2_L004 unaligned CPTAC3 a7ba3331-3d0c-4a01-a11e-d1b5628c2d1a 611b56558b301522dbbf4d188f4ee60d { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02244.RNA-Seq.T C3N-02244 UCEC RNA-Seq tumor CPT0129000001 20210729_P3_E7_WB7988-Plate3_S55_R1_001.fastq.gz 8929658897 FASTQ unaligned CPTAC3 a95fb7ee-a459-4581-ae0d-c2f2cf028304 3788d9d05ba71b67f268c75586c171e4 +C3N-02244.RNA-Seq.T C3N-02244 UCEC RNA-Seq tumor CPT0129000001 20210729_P3_E7_WB7988-Plate3_S55_R2_001.fastq.gz 9324635698 FASTQ unaligned CPTAC3 1b379483-2be0-4447-a925-5dc1727b685d 3d3f64c680c43e2d5f0f9982c0a2c09c +C3N-02244.RNA-Seq.transcriptome.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0128960009 513056fe-4acd-4391-bbe9-6b31c6903170.rna_seq.transcriptome.gdc_realn.bam 9217387197 BAM transcriptome harmonized CPTAC3 aa2347f3-b4f9-4232-94f6-9f9ea7fa6f56 8ea762e011cb7fefcebbc65394bbab58 { 'aliquot_tag': 'ALQ_afe51e58', 'gdc_sample_type': 'Primary Tumor' } +C3N-02244.RNA-Seq.transcriptome.T.hg38 C3N-02244 UCEC RNA-Seq tumor CPT0129000001 05519ec4-5fca-4ee4-ab6f-2de5d78bd618.rna_seq.transcriptome.gdc_realn.bam 9661130781 BAM transcriptome harmonized CPTAC3 b2625944-283e-4add-b8b3-5458d0a10e6b db0394b6cccddbcb3862fb5966d9cd20 { 'aliquot_tag': 'ALQ_af0639b6', 'gdc_sample_type': 'Primary Tumor' } C3N-02244.WGS.N C3N-02244 UCEC WGS blood_normal CPT0130790002 CPT0130790002.WholeGenome.RP-1303.bam 62808517216 BAM aligned CPTAC3 9b73f5e2-8542-48aa-a37d-32492e26dca1 4f5715f692d55339bfda88cbae3e7fe7 { 'aliquot_tag': 'ALQ_7f287f88', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02244.WGS.N.hg38 C3N-02244 UCEC WGS blood_normal CPT0130790002 dc38f60d-f4cc-4468-aba1-4e164e246570_wgs_gdc_realn.bam 91212059309 BAM harmonized CPTAC3 8e9bba9a-0424-4f69-97be-1c3c9c9a8e18 e38ba07fb7ae5c05096447f3cd3b81e0 { 'aliquot_tag': 'ALQ_7f287f88', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02244.WGS.T C3N-02244 UCEC WGS tumor CPT0128960006 CPT0128960006.WholeGenome.RP-1303.bam 59045166107 BAM aligned CPTAC3 4eeb983a-7654-4a9c-8ee4-fda81d65c786 aea72dca16ea4bf67d847ade475f81ee { 'aliquot_tag': 'ALQ_3f5a03c9', 'gdc_sample_type': 'Primary Tumor' } @@ -30018,17 +32104,21 @@ C3N-02244.WXS.N.hg38 C3N-02244 UCEC WXS blood_normal CPT0130790002 dc38f60d-f4cc C3N-02244.WXS.T C3N-02244 UCEC WXS tumor CPT0128960006 CPT0128960006.WholeExome.RP-1303.bam 24208818106 BAM aligned CPTAC3 23f4c741-ad23-4f4d-9d6b-6fb2fa61336c 86d7ba12e9a65f7e8e1a795f7dec2106 { 'aliquot_tag': 'ALQ_3f5a03c9', 'gdc_sample_type': 'Primary Tumor' } C3N-02244.WXS.T.hg38 C3N-02244 UCEC WXS tumor CPT0128960006 f0508592-8984-40b3-b199-cd49719d56bd_wxs_gdc_realn.bam 32722721438 BAM harmonized CPTAC3 926a9db3-cac7-4f8e-ba11-86d84349b6e8 9ae6e92201c45d5419c7f6f98e39a29c { 'aliquot_tag': 'ALQ_3f5a03c9', 'gdc_sample_type': 'Primary Tumor' } C3N-02247.DUP_3d435967.WGS.T C3N-02247 UCEC WGS tumor CPT0265300006_1 CPT0265300006_1.WholeGenome.RP-1303.bam 85145559916 BAM aligned CPTAC3 4876a270-c55e-443a-9cce-d6e5774d78a7 b85b43977e03b6a47be3fd4d636eb2d1 { 'aliquot_tag': 'DUP_3d435967', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } +C3N-02247.DUP_3d435967.WGS.T.hg38 C3N-02247 UCEC WGS tumor CPT0265300006_1 26202983-46df-480f-b729-c358bbfca65d_wgs_gdc_realn.bam 122224965740 BAM harmonized CPTAC3 2c4f599d-484e-4c84-bd0f-833d53ffc12d 3fd9c4dc7f0ca2c4d31fe6e8a174f393 { 'aliquot_tag': 'DUP_3d435967', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } C3N-02247.MethArray.Green.T C3N-02247 UCEC Methylation Array tumor CPT0265300006 203561450008_R02C01_Grn.idat 13676221 IDAT Green NA CPTAC3 99659b5f-bd2f-465b-91ae-6b1e050c2fab f84633052116defc9f226f253c4e5e8e { 'aliquot_tag': 'ALQ_cd9186f0', 'gdc_sample_type': 'Primary Tumor' } C3N-02247.MethArray.Red.T C3N-02247 UCEC Methylation Array tumor CPT0265300006 203561450008_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 b5684f05-3570-4da3-bb4d-c9d3199ba6af 1a250e20235306ef5117107a4a67d0c4 { 'aliquot_tag': 'ALQ_cd9186f0', 'gdc_sample_type': 'Primary Tumor' } C3N-02247.miRNA-Seq.T C3N-02247 UCEC miRNA-Seq tumor CPT0265300009 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTGAT_S25_L004_R1_001.unaln.bam 264997853 BAM unaligned CPTAC3 418bb62a-38cf-4dd7-a131-a8837b4dee8b 7816c71a4adbedead006c45e27e74f64 { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor' } C3N-02247.miRNA-Seq.T.hg38 C3N-02247 UCEC miRNA-Seq tumor CPT0265300009 c710640f-3189-452e-9d83-bf6ce574a151_mirnaseq_gdc_realn.bam 299673841 BAM harmonized CPTAC3 f18e9cca-4971-4383-9da9-c6776331e81e ee1ff2ec0d51d012691c21c55520ca76 { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor' } -C3N-02247.RNA-Seq.chimeric.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 8d0e06de-5f0f-4a2f-8b82-cc95ba27f913.rna_seq.chimeric.gdc_realn.bam 37914666 BAM chimeric harmonized CPTAC3 37e763db-b717-4af8-a550-0166ed0acae1 75ef0d83c39c6a8671da84c06ee00db9 { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor' } -C3N-02247.RNA-Seq.genomic.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 8d0e06de-5f0f-4a2f-8b82-cc95ba27f913.rna_seq.genomic.gdc_realn.bam 7966279225 BAM genomic harmonized CPTAC3 7bf45c4f-1274-4ae3-81ac-1aa7035a5a5e 1cda198dd849b3d2e20ee3ef707eebcc { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor' } -C3N-02247.RNA-Seq.R1_L004.T C3N-02247 UCEC RNA-Seq tumor CPT0265300009 190523_UNC32-K00270_0176_BH7CW7BBXY_CAATTAAC-CGAGATAT_S15_L004_R1_001.fastq.gz 3816292755 FASTQ R1_L004 unaligned CPTAC3 836bb5d6-7af6-4d04-974c-b93dd4f99701 41c5faa8d0ee85d5716f82b1fe032565 { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor' } -C3N-02247.RNA-Seq.R1_.T C3N-02247 UCEC RNA-Seq tumor CPT0265350001 20210729_P3_A4_WB7988-Plate3_S4_R1_001.fastq.gz 4291621580 FASTQ R1_ unaligned CPTAC3 43ca214e-464d-43ce-a619-607798c07615 b3777f3762b89a0f5592598973bfeb2e { 'aliquot_tag': 'ALQ_9b159c23', 'gdc_sample_type': 'Primary Tumor' } -C3N-02247.RNA-Seq.R2_L004.T C3N-02247 UCEC RNA-Seq tumor CPT0265300009 190523_UNC32-K00270_0176_BH7CW7BBXY_CAATTAAC-CGAGATAT_S15_L004_R2_001.fastq.gz 4179999558 FASTQ R2_L004 unaligned CPTAC3 68f07b2f-c9ae-42d5-8e3c-5259e04e69c3 7588f35ecb130d534f72f9af14c10d87 { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor' } -C3N-02247.RNA-Seq.R2_.T C3N-02247 UCEC RNA-Seq tumor CPT0265350001 20210729_P3_A4_WB7988-Plate3_S4_R2_001.fastq.gz 4404437118 FASTQ R2_ unaligned CPTAC3 78dc7b54-9e26-4998-837f-5f7c6b9d722c 11ba36323130cdb86af1fb4e27cb7e4a { 'aliquot_tag': 'ALQ_9b159c23', 'gdc_sample_type': 'Primary Tumor' } -C3N-02247.RNA-Seq.transcriptome.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 8d0e06de-5f0f-4a2f-8b82-cc95ba27f913.rna_seq.transcriptome.gdc_realn.bam 8550741206 BAM transcriptome harmonized CPTAC3 847ab1f2-eac7-4b35-8731-34511c9e25ab 8daa66714952c1da4af838548cca0ee1 { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor' } +C3N-02247.RNA-Seq.chimeric.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 cd4411af-e2b0-4218-a47e-6e894dbba5ab.rna_seq.chimeric.gdc_realn.bam 37896601 BAM chimeric harmonized CPTAC3 f9e437d4-fecb-4e3f-ab6e-0b5d4534c61b d1ab3504cbd063b2cae7b2f73f728d16 { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor' } +C3N-02247.RNA-Seq.chimeric.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265350001 079e43a8-44ca-4e8f-997b-57a2b6018fd5.rna_seq.chimeric.gdc_realn.bam 192046085 BAM chimeric harmonized CPTAC3 ee07b2e8-33d9-46f8-86f2-5f7ef1e616af ecc1fc2c92333520e5dc804b1fd704d3 { 'aliquot_tag': 'ALQ_9b159c23', 'gdc_sample_type': 'Primary Tumor' } +C3N-02247.RNA-Seq.genomic.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 cd4411af-e2b0-4218-a47e-6e894dbba5ab.rna_seq.genomic.gdc_realn.bam 7967421673 BAM genomic harmonized CPTAC3 b24ffa6c-a527-464c-8b28-b7ec62d6d3a7 58677e619b6c4c9c41c786aaead3d41e { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor' } +C3N-02247.RNA-Seq.genomic.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265350001 079e43a8-44ca-4e8f-997b-57a2b6018fd5.rna_seq.genomic.gdc_realn.bam 7771075924 BAM genomic harmonized CPTAC3 d7763bc3-8fb7-4d6e-a442-12909b63c6f3 3d4b6272771de747764ede1940d992d3 { 'aliquot_tag': 'ALQ_9b159c23', 'gdc_sample_type': 'Primary Tumor' } +C3N-02247.RNA-Seq.R1_L004.T C3N-02247 UCEC RNA-Seq tumor CPT0265300009 190523_UNC32-K00270_0176_BH7CW7BBXY_CAATTAAC-CGAGATAT_S15_L004_R1_001.fastq.gz 3816292755 FASTQ R1_L004 unaligned CPTAC3 836bb5d6-7af6-4d04-974c-b93dd4f99701 41c5faa8d0ee85d5716f82b1fe032565 { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02247.RNA-Seq.R2_L004.T C3N-02247 UCEC RNA-Seq tumor CPT0265300009 190523_UNC32-K00270_0176_BH7CW7BBXY_CAATTAAC-CGAGATAT_S15_L004_R2_001.fastq.gz 4179999558 FASTQ R2_L004 unaligned CPTAC3 68f07b2f-c9ae-42d5-8e3c-5259e04e69c3 7588f35ecb130d534f72f9af14c10d87 { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02247.RNA-Seq.T C3N-02247 UCEC RNA-Seq tumor CPT0265350001 20210729_P3_A4_WB7988-Plate3_S4_R1_001.fastq.gz 4291621580 FASTQ unaligned CPTAC3 43ca214e-464d-43ce-a619-607798c07615 b3777f3762b89a0f5592598973bfeb2e +C3N-02247.RNA-Seq.T C3N-02247 UCEC RNA-Seq tumor CPT0265350001 20210729_P3_A4_WB7988-Plate3_S4_R2_001.fastq.gz 4404437118 FASTQ unaligned CPTAC3 78dc7b54-9e26-4998-837f-5f7c6b9d722c 11ba36323130cdb86af1fb4e27cb7e4a +C3N-02247.RNA-Seq.transcriptome.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265300009 cd4411af-e2b0-4218-a47e-6e894dbba5ab.rna_seq.transcriptome.gdc_realn.bam 9751276941 BAM transcriptome harmonized CPTAC3 3f94e1b6-d87b-4b30-8f0b-fbdb34f0e866 7308e92fb8c9aae28f3f7040df5c0c96 { 'aliquot_tag': 'ALQ_5d2e9b61', 'gdc_sample_type': 'Primary Tumor' } +C3N-02247.RNA-Seq.transcriptome.T.hg38 C3N-02247 UCEC RNA-Seq tumor CPT0265350001 079e43a8-44ca-4e8f-997b-57a2b6018fd5.rna_seq.transcriptome.gdc_realn.bam 2596901484 BAM transcriptome harmonized CPTAC3 d294a50e-734f-4835-81ad-2fc84504f92d eed0e801694a67c7886a7c712c7a5c7b { 'aliquot_tag': 'ALQ_9b159c23', 'gdc_sample_type': 'Primary Tumor' } C3N-02247.WGS.N C3N-02247 UCEC WGS blood_normal CPT0264040002 CPT0264040002.WholeGenome.RP-1303.bam 61370766671 BAM aligned CPTAC3 a2a12f78-677e-4335-8e18-52e4b8179688 0d1eb675ed7a8aa4056828264aa37bf1 { 'aliquot_tag': 'ALQ_1f9f9d33', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02247.WGS.N.hg38 C3N-02247 UCEC WGS blood_normal CPT0264040002 192611c7-f72b-4642-a1b2-adceb62352d2_wgs_gdc_realn.bam 90982321179 BAM harmonized CPTAC3 8f51e91f-aada-4742-956a-5066a2c3ceb5 e1cc4263716f9e07875122411099f9ca { 'aliquot_tag': 'ALQ_1f9f9d33', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02247.WGS.T C3N-02247 UCEC WGS tumor CPT0265300006 CPT0265300006.WholeGenome.RP-1303.bam 28178297608 BAM aligned CPTAC3 c125bbc4-60fd-4db5-8bd2-e66857784f83 31630741c5ff592dd5b557e84db78bf3 { 'aliquot_tag': 'ALQ_cd9186f0', 'gdc_sample_type': 'Primary Tumor' } @@ -30043,16 +32133,16 @@ C3N-02248.miRNA-Seq.A C3N-02248 CCRCC miRNA-Seq tissue_normal CPT0129200006 1901 C3N-02248.miRNA-Seq.A.hg38 C3N-02248 CCRCC miRNA-Seq tissue_normal CPT0129200006 a2612000-2ea3-4c41-b5eb-70885c359b0b_mirnaseq_gdc_realn.bam 238980378 BAM harmonized CPTAC3 1050769f-9840-4038-8e99-b3de14006a37 a3db8c2ecb7067e4df04ed4b7acaff22 { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02248.miRNA-Seq.T C3N-02248 CCRCC miRNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0176_AHYGLVBBXX_CTAGCT_S38_L005_R1_001.unaln.bam 268871621 BAM unaligned CPTAC3 af48f33c-dc4a-445f-8e3e-8f7a9cb0b771 6a85906d93458831f6ef33fb9936bc6e { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor' } C3N-02248.miRNA-Seq.T.hg38 C3N-02248 CCRCC miRNA-Seq tumor CPT0129170010 b8c1c0e5-b373-444e-9ed5-b9bbcdb3455b_mirnaseq_gdc_realn.bam 292632927 BAM harmonized CPTAC3 10f91e91-2b27-46e7-8a90-0c2d41137c7f 1e8b700110c09eec4bde807cc0af7187 { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02248.RNA-Seq.chimeric.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 b80b3ff8-5170-4bda-a89a-3b18a109a074.rna_seq.chimeric.gdc_realn.bam 116269103 BAM chimeric harmonized CPTAC3 3c7a5ca7-ae07-4be1-8876-edea41389b4b d78468562a35ca4500de6e78e0850113 { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02248.RNA-Seq.chimeric.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 b3d7320b-b9d7-4a84-8a21-9dfa65794c85.rna_seq.chimeric.gdc_realn.bam 63019280 BAM chimeric harmonized CPTAC3 a527e799-51b0-4eb6-9e58-76fdf1189935 4474efa952f5ea29404be8ea0fcc5a25 { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02248.RNA-Seq.genomic.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 b80b3ff8-5170-4bda-a89a-3b18a109a074.rna_seq.genomic.gdc_realn.bam 7934954177 BAM genomic harmonized CPTAC3 b79ccbc8-3752-4216-a16f-9144518393c9 1f997b38649db635d2951dec2830c9d8 { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02248.RNA-Seq.genomic.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 b3d7320b-b9d7-4a84-8a21-9dfa65794c85.rna_seq.genomic.gdc_realn.bam 7602461898 BAM genomic harmonized CPTAC3 afde2af8-68de-40d1-9983-29b01ee29a5f e598d155a8477b708519b1980e28b522 { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02248.RNA-Seq.R1_L005.A C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 190125_UNC31-K00269_0184_AH3M32BBXY_TGACCA_S13_L005_R1_001.fastq.gz 3745524961 FASTQ R1_L005 unaligned CPTAC3 9201644c-5926-4dbc-b7d4-cf0c3cbab09f 4f3ad3e702ce1ac37d39fc7136565cf6 { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02248.RNA-Seq.R1_L005.T C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0177_BH32KTBBXY_AGTTCC_S18_L005_R1_001.fastq.gz 3688404973 FASTQ R1_L005 unaligned CPTAC3 493d3dc8-1ad8-4fae-9a6d-5dcd5e4ddb37 f96b95605a981bea09d072344c0f5bdb { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02248.RNA-Seq.R2_L005.A C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 190125_UNC31-K00269_0184_AH3M32BBXY_TGACCA_S13_L005_R2_001.fastq.gz 3872777502 FASTQ R2_L005 unaligned CPTAC3 9de691ea-8c5e-4dce-b2a7-a4aa7cfa378d b745cda025b59f48a7f00f6049be80a2 { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02248.RNA-Seq.R2_L005.T C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0177_BH32KTBBXY_AGTTCC_S18_L005_R2_001.fastq.gz 3814584631 FASTQ R2_L005 unaligned CPTAC3 6a6d5404-1afc-4593-95d3-384984531f95 b7ffce2058307973118c68ab0ee4a766 { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02248.RNA-Seq.transcriptome.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 b80b3ff8-5170-4bda-a89a-3b18a109a074.rna_seq.transcriptome.gdc_realn.bam 7613758300 BAM transcriptome harmonized CPTAC3 8d4eafdd-1179-4fbf-93db-48db6ce1b6ef ebdf92e1e10e1ea848e92f024dc005df { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02248.RNA-Seq.transcriptome.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 b3d7320b-b9d7-4a84-8a21-9dfa65794c85.rna_seq.transcriptome.gdc_realn.bam 8731479701 BAM transcriptome harmonized CPTAC3 42582dcf-f68e-4e5a-a6ad-9d963336c2d9 7078a599b128ad21fa4fb288896dd087 { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02248.RNA-Seq.chimeric.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 7426fb31-900f-4b17-a6d4-ab3214c7b44e.rna_seq.chimeric.gdc_realn.bam 116257427 BAM chimeric harmonized CPTAC3 0d9293be-816b-4f67-b95e-f1ebe54db112 48d8619723ffdbd0b4754dc95163e14f { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02248.RNA-Seq.chimeric.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 f55580cd-cc01-4ec0-bedb-4d3d688a2440.rna_seq.chimeric.gdc_realn.bam 62998600 BAM chimeric harmonized CPTAC3 59ebdfa8-0c66-4a7f-b58a-27749e4d8e2e 65415b8fb824fee34026257539219123 { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02248.RNA-Seq.genomic.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 7426fb31-900f-4b17-a6d4-ab3214c7b44e.rna_seq.genomic.gdc_realn.bam 7935817877 BAM genomic harmonized CPTAC3 4e80aa7c-4fa0-4f8e-9bf1-da9eff9d705b c5fee6136c04e7635f00b1fffc4f9f31 { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02248.RNA-Seq.genomic.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 f55580cd-cc01-4ec0-bedb-4d3d688a2440.rna_seq.genomic.gdc_realn.bam 7603906084 BAM genomic harmonized CPTAC3 dba12368-e4e0-4a36-9c70-c2afe9cbc99c 44899811e62eaab3498d4a4f5576da47 { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02248.RNA-Seq.R1_L005.A C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 190125_UNC31-K00269_0184_AH3M32BBXY_TGACCA_S13_L005_R1_001.fastq.gz 3745524961 FASTQ R1_L005 unaligned CPTAC3 9201644c-5926-4dbc-b7d4-cf0c3cbab09f 4f3ad3e702ce1ac37d39fc7136565cf6 { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02248.RNA-Seq.R1_L005.T C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0177_BH32KTBBXY_AGTTCC_S18_L005_R1_001.fastq.gz 3688404973 FASTQ R1_L005 unaligned CPTAC3 493d3dc8-1ad8-4fae-9a6d-5dcd5e4ddb37 f96b95605a981bea09d072344c0f5bdb { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02248.RNA-Seq.R2_L005.A C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 190125_UNC31-K00269_0184_AH3M32BBXY_TGACCA_S13_L005_R2_001.fastq.gz 3872777502 FASTQ R2_L005 unaligned CPTAC3 9de691ea-8c5e-4dce-b2a7-a4aa7cfa378d b745cda025b59f48a7f00f6049be80a2 { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02248.RNA-Seq.R2_L005.T C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 190108_UNC31-K00269_0177_BH32KTBBXY_AGTTCC_S18_L005_R2_001.fastq.gz 3814584631 FASTQ R2_L005 unaligned CPTAC3 6a6d5404-1afc-4593-95d3-384984531f95 b7ffce2058307973118c68ab0ee4a766 { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02248.RNA-Seq.transcriptome.A.hg38 C3N-02248 CCRCC RNA-Seq tissue_normal CPT0129200006 7426fb31-900f-4b17-a6d4-ab3214c7b44e.rna_seq.transcriptome.gdc_realn.bam 8729877169 BAM transcriptome harmonized CPTAC3 6d8a4f68-251e-45e7-82c0-18c9029139cc bca22416eceaca258dc69a9b25c198d2 { 'aliquot_tag': 'ALQ_7caa0d1e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02248.RNA-Seq.transcriptome.T.hg38 C3N-02248 CCRCC RNA-Seq tumor CPT0129170010 f55580cd-cc01-4ec0-bedb-4d3d688a2440.rna_seq.transcriptome.gdc_realn.bam 9956708494 BAM transcriptome harmonized CPTAC3 ce2ea532-5b1c-47dc-be8b-f1c329eeb9b3 e0b43bb6871832a9e58b677e895f08fb { 'aliquot_tag': 'ALQ_b86637d4', 'gdc_sample_type': 'Primary Tumor' } C3N-02248.WGS.N C3N-02248 CCRCC WGS blood_normal CPT0130830002 CPT0130830002.WholeGenome.RP-1303.bam 54458285622 BAM aligned CPTAC3 59da5a36-c942-4e5d-8985-1f3a91c99e2e 2e0e7d6ab52d67deac00320e89d9136b { 'aliquot_tag': 'ALQ_c4ced5fc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02248.WGS.N.hg38 C3N-02248 CCRCC WGS blood_normal CPT0130830002 bf11277c-5f06-4f58-9429-696e2fdcd6d3_wgs_gdc_realn.bam 78452702010 BAM harmonized CPTAC3 3495329f-943f-4717-818a-0602597272e8 8d271fcf064ef9595439fb24901116b7 { 'aliquot_tag': 'ALQ_c4ced5fc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02248.WGS.T C3N-02248 CCRCC WGS tumor CPT0129170007 CPT0129170007.WholeGenome.RP-1303.bam 55459907416 BAM aligned CPTAC3 06ae9a20-85fe-4584-95bc-6ce23d489016 77d2474db7263a7e6ba74df9fc7a33b4 { 'aliquot_tag': 'ALQ_3f199336', 'gdc_sample_type': 'Primary Tumor' } @@ -30067,18 +32157,21 @@ C3N-02249.miRNA-Seq.A C3N-02249 UCEC miRNA-Seq tissue_normal CPT0129100006 19013 C3N-02249.miRNA-Seq.A.hg38 C3N-02249 UCEC miRNA-Seq tissue_normal CPT0129100006 fdc5bd57-bdaf-4bc5-bf27-1a39bc3c7899_mirnaseq_gdc_realn.bam 314939891 BAM harmonized CPTAC3 2814e83a-769f-4e6b-b785-e0813ff51aa0 fa57f16285542b197ed060305b700fc3 { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02249.miRNA-Seq.T C3N-02249 UCEC miRNA-Seq tumor CPT0129080009 190108_UNC31-K00269_0176_AHYGLVBBXX_GTAGAG_S17_L004_R1_001.unaln.bam 163688300 BAM unaligned CPTAC3 acd52500-7cb8-4acd-b8d3-413042b964f5 938eed547562d2c32d4b675d87c65894 { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor' } C3N-02249.miRNA-Seq.T.hg38 C3N-02249 UCEC miRNA-Seq tumor CPT0129080009 c290e317-d998-46ec-822f-20e66af2713e_mirnaseq_gdc_realn.bam 177697483 BAM harmonized CPTAC3 468ae25a-fa97-45db-a715-197745b35f1f 2773c64fd06f62a8e0ecfebf9bb45039 { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor' } -C3N-02249.RNA-Seq.chimeric.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 265aadd0-260b-4948-94b5-da7046df334b.rna_seq.chimeric.gdc_realn.bam 33700498 BAM chimeric harmonized CPTAC3 1c10a9b0-afb8-45ec-9f33-5f1881662b57 bb44948d09f59e9073a469cda151a779 { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02249.RNA-Seq.chimeric.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 9c3ae795-8f10-4429-95a3-0215962a4018.rna_seq.chimeric.gdc_realn.bam 275630588 BAM chimeric harmonized CPTAC3 ddf5dc05-ee36-4ce7-aec9-3ee24ae5efaa 3627504d51f56dbfa2df5bcdf85cae51 { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor' } -C3N-02249.RNA-Seq.genomic.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 265aadd0-260b-4948-94b5-da7046df334b.rna_seq.genomic.gdc_realn.bam 8888134325 BAM genomic harmonized CPTAC3 0be9d6b0-13e1-4d6b-ab2c-51921a71d672 e0e9792b11e231e612c466de6ceca7dd { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02249.RNA-Seq.genomic.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 9c3ae795-8f10-4429-95a3-0215962a4018.rna_seq.genomic.gdc_realn.bam 8639810631 BAM genomic harmonized CPTAC3 361c193a-b6b5-4f26-8f57-8f3cecb1bdc0 526c299b0e48e4d424aa90536afc6a2d { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor' } -C3N-02249.RNA-Seq.R1_L005.T C3N-02249 UCEC RNA-Seq tumor CPT0129080009 190115_UNC31-K00269_0179_BH357YBBXY_GTCCGC_S13_L005_R1_001.fastq.gz 3833341354 FASTQ R1_L005 unaligned CPTAC3 89405e08-b72d-4189-939f-c18f88f161a8 f26ecd6c0ccc2e22ed07abb34af1e994 { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor' } -C3N-02249.RNA-Seq.R1_L007.A C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 190118_UNC32-K00270_0139_AH3CHKBBXY_TGACCA_S4_L007_R1_001.fastq.gz 3999607005 FASTQ R1_L007 unaligned CPTAC3 bb3060cb-3d7d-4c8e-95d3-6647be70684f 1a36604aca3a8b914be868509861d860 { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02249.RNA-Seq.R1_.T C3N-02249 UCEC RNA-Seq tumor CPT0129110001 20210729_P3_E10_WB7988-Plate3_S58_R1_001.fastq.gz 6627127489 FASTQ R1_ unaligned CPTAC3 c4f8c3d4-d759-4b58-a9f4-3e62be8ebe73 7ec9f515b03f6529a5bbce7d444bb0e7 { 'aliquot_tag': 'ALQ_593ac3a3', 'gdc_sample_type': 'Primary Tumor' } -C3N-02249.RNA-Seq.R2_L005.T C3N-02249 UCEC RNA-Seq tumor CPT0129080009 190115_UNC31-K00269_0179_BH357YBBXY_GTCCGC_S13_L005_R2_001.fastq.gz 4307337781 FASTQ R2_L005 unaligned CPTAC3 8599e40d-9c5e-4ad8-847b-0adc85ff0cfa 7f26f2a0238c0c9e16463fdecea44d0c { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor' } -C3N-02249.RNA-Seq.R2_L007.A C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 190118_UNC32-K00270_0139_AH3CHKBBXY_TGACCA_S4_L007_R2_001.fastq.gz 3872848447 FASTQ R2_L007 unaligned CPTAC3 45c48883-9367-46f1-a9c1-69062f645f0f ae809a2fbf45d4ab06db0ad89b675697 { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02249.RNA-Seq.R2_.T C3N-02249 UCEC RNA-Seq tumor CPT0129110001 20210729_P3_E10_WB7988-Plate3_S58_R2_001.fastq.gz 6998254774 FASTQ R2_ unaligned CPTAC3 507fc5ed-98e0-4627-9195-808f424e2f2a 2a45e88db22c6d913a7e1d9d85cc6e49 { 'aliquot_tag': 'ALQ_593ac3a3', 'gdc_sample_type': 'Primary Tumor' } -C3N-02249.RNA-Seq.transcriptome.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 265aadd0-260b-4948-94b5-da7046df334b.rna_seq.transcriptome.gdc_realn.bam 8158916041 BAM transcriptome harmonized CPTAC3 0e397c7e-c721-4879-96ed-f5ea4cfb854a e26c6946e5d9e696344d9340d0b17e41 { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02249.RNA-Seq.transcriptome.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 9c3ae795-8f10-4429-95a3-0215962a4018.rna_seq.transcriptome.gdc_realn.bam 9551132679 BAM transcriptome harmonized CPTAC3 2f142c33-1a4c-4bee-a42a-eee7dfbd20f6 94d16854eceaff1b969fad448d6eef4e { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor' } +C3N-02249.RNA-Seq.chimeric.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 74333147-f344-4fcb-92cd-5669c3ead55a.rna_seq.chimeric.gdc_realn.bam 33674896 BAM chimeric harmonized CPTAC3 837fe98b-174d-485f-b6e8-25f5c9f19b4d 021d5e42e9bcbddc206514bf1d0cdefc { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02249.RNA-Seq.chimeric.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 4d951313-3084-400f-af53-47f6be51577f.rna_seq.chimeric.gdc_realn.bam 275596259 BAM chimeric harmonized CPTAC3 fce2bab6-0a47-4db0-9452-d33ca3fc4098 a3718ebd3a1a03cd3e3fa0af38432fcd { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor' } +C3N-02249.RNA-Seq.chimeric.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129110001 de426051-5111-4a79-bf5a-0babb3711e84.rna_seq.chimeric.gdc_realn.bam 211272488 BAM chimeric harmonized CPTAC3 b740490d-08c7-4d47-83c5-d2b19b3f6f96 fe22d363c08df87c4ab2a8976bb2b4f6 { 'aliquot_tag': 'ALQ_593ac3a3', 'gdc_sample_type': 'Primary Tumor' } +C3N-02249.RNA-Seq.genomic.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 74333147-f344-4fcb-92cd-5669c3ead55a.rna_seq.genomic.gdc_realn.bam 8888977801 BAM genomic harmonized CPTAC3 a3774a01-f54e-426c-8983-96720ed22196 0d935ba9347fe91086e70b695fbdefba { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02249.RNA-Seq.genomic.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 4d951313-3084-400f-af53-47f6be51577f.rna_seq.genomic.gdc_realn.bam 8640824363 BAM genomic harmonized CPTAC3 411ac7f1-dbfd-40aa-899e-3532239bc893 84e39ac0bcf549c5ac000c0b1b2d7db5 { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor' } +C3N-02249.RNA-Seq.genomic.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129110001 de426051-5111-4a79-bf5a-0babb3711e84.rna_seq.genomic.gdc_realn.bam 10475166913 BAM genomic harmonized CPTAC3 ba3a79d8-13c2-42fc-94ca-543845cf694c 99aaf7658412221e241145f42f65aa3c { 'aliquot_tag': 'ALQ_593ac3a3', 'gdc_sample_type': 'Primary Tumor' } +C3N-02249.RNA-Seq.R1_L005.T C3N-02249 UCEC RNA-Seq tumor CPT0129080009 190115_UNC31-K00269_0179_BH357YBBXY_GTCCGC_S13_L005_R1_001.fastq.gz 3833341354 FASTQ R1_L005 unaligned CPTAC3 89405e08-b72d-4189-939f-c18f88f161a8 f26ecd6c0ccc2e22ed07abb34af1e994 { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02249.RNA-Seq.R1_L007.A C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 190118_UNC32-K00270_0139_AH3CHKBBXY_TGACCA_S4_L007_R1_001.fastq.gz 3999607005 FASTQ R1_L007 unaligned CPTAC3 bb3060cb-3d7d-4c8e-95d3-6647be70684f 1a36604aca3a8b914be868509861d860 { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02249.RNA-Seq.R2_L005.T C3N-02249 UCEC RNA-Seq tumor CPT0129080009 190115_UNC31-K00269_0179_BH357YBBXY_GTCCGC_S13_L005_R2_001.fastq.gz 4307337781 FASTQ R2_L005 unaligned CPTAC3 8599e40d-9c5e-4ad8-847b-0adc85ff0cfa 7f26f2a0238c0c9e16463fdecea44d0c { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02249.RNA-Seq.R2_L007.A C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 190118_UNC32-K00270_0139_AH3CHKBBXY_TGACCA_S4_L007_R2_001.fastq.gz 3872848447 FASTQ R2_L007 unaligned CPTAC3 45c48883-9367-46f1-a9c1-69062f645f0f ae809a2fbf45d4ab06db0ad89b675697 { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02249.RNA-Seq.T C3N-02249 UCEC RNA-Seq tumor CPT0129110001 20210729_P3_E10_WB7988-Plate3_S58_R1_001.fastq.gz 6627127489 FASTQ unaligned CPTAC3 c4f8c3d4-d759-4b58-a9f4-3e62be8ebe73 7ec9f515b03f6529a5bbce7d444bb0e7 +C3N-02249.RNA-Seq.T C3N-02249 UCEC RNA-Seq tumor CPT0129110001 20210729_P3_E10_WB7988-Plate3_S58_R2_001.fastq.gz 6998254774 FASTQ unaligned CPTAC3 507fc5ed-98e0-4627-9195-808f424e2f2a 2a45e88db22c6d913a7e1d9d85cc6e49 +C3N-02249.RNA-Seq.transcriptome.A.hg38 C3N-02249 UCEC RNA-Seq tissue_normal CPT0129100006 74333147-f344-4fcb-92cd-5669c3ead55a.rna_seq.transcriptome.gdc_realn.bam 9378577474 BAM transcriptome harmonized CPTAC3 26c67d64-2d48-43f4-9ec9-33eb6652be1c ec6ff7813e63503e4261694a928ec6e4 { 'aliquot_tag': 'ALQ_fa3e7fb0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02249.RNA-Seq.transcriptome.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129080009 4d951313-3084-400f-af53-47f6be51577f.rna_seq.transcriptome.gdc_realn.bam 11008171552 BAM transcriptome harmonized CPTAC3 c8211f4f-34c3-4962-8af9-1c25c94a9711 08358b2991417cdc6dba42e38465a57f { 'aliquot_tag': 'ALQ_91adfa45', 'gdc_sample_type': 'Primary Tumor' } +C3N-02249.RNA-Seq.transcriptome.T.hg38 C3N-02249 UCEC RNA-Seq tumor CPT0129110001 de426051-5111-4a79-bf5a-0babb3711e84.rna_seq.transcriptome.gdc_realn.bam 6650275329 BAM transcriptome harmonized CPTAC3 971c4651-60cd-485b-8a20-d984e177fa78 9d1e06cbbb424034d7a1aa50397c1382 { 'aliquot_tag': 'ALQ_593ac3a3', 'gdc_sample_type': 'Primary Tumor' } C3N-02249.WGS.N C3N-02249 UCEC WGS blood_normal CPT0130810002 CPT0130810002.WholeGenome.RP-1303.bam 62036226534 BAM aligned CPTAC3 be0e1bfd-d3bd-46c0-8672-83374263a071 bdbd326a215acefa7611884b00ca64ba { 'aliquot_tag': 'ALQ_be0e869c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02249.WGS.N.hg38 C3N-02249 UCEC WGS blood_normal CPT0130810002 5df2768a-0e96-490f-bff2-48589110108f_wgs_gdc_realn.bam 92762852447 BAM harmonized CPTAC3 2caf5ea0-a5fa-453c-8fe5-3a681b989632 91c991e4b519e7da6547c8d45426f1c3 { 'aliquot_tag': 'ALQ_be0e869c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02249.WGS.T C3N-02249 UCEC WGS tumor CPT0129080006 CPT0129080006.WholeGenome.RP-1303.bam 63847827724 BAM aligned CPTAC3 0445ef83-e285-447d-8435-3e10687c0cfa 476a6f9242e59ce5e51e2058936978ec { 'aliquot_tag': 'ALQ_112e7d4', 'gdc_sample_type': 'Primary Tumor' } @@ -30097,12 +32190,12 @@ C3N-02252.miRNA-Seq.T C3N-02252 LSCC miRNA-Seq tumor CPT0128890009 181219_UNC31- C3N-02252.miRNA-Seq.T.hg38 C3N-02252 LSCC miRNA-Seq tumor CPT0128890009 bc3e8791-f273-45a9-be00-b7afc414e491_mirnaseq_gdc_realn.bam 295002464 BAM harmonized CPTAC3 00eccc28-6c40-4bbc-873f-dbdf405bf700 e6dddc9a3b9eef821d0adf794d1fa150 { 'aliquot_tag': 'ALQ_e6e95a2c', 'gdc_sample_type': 'Primary Tumor' } C3N-02252.RNA-Seq.chimeric.A.hg38 C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 0cfccd17-0acd-48fb-8c0d-a06960e62ab4.rna_seq.chimeric.gdc_realn.bam 27006368 BAM chimeric harmonized CPTAC3 e96000ab-c167-48a0-8609-3631a44e1f95 834afc5a1e832c4f85a88a91566f4fcd { 'aliquot_tag': 'ALQ_20a5ebf8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02252.RNA-Seq.chimeric.T.hg38 C3N-02252 LSCC RNA-Seq tumor CPT0128890009 c14748a8-04dc-4836-853e-cbf480520ebd.rna_seq.chimeric.gdc_realn.bam 29333169 BAM chimeric harmonized CPTAC3 3b9cbe96-499c-4e38-a047-7720850581bf ae7b67ceb9b7515c973458b3ef2d6cdc { 'aliquot_tag': 'ALQ_e6e95a2c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02252.RNA-Seq.genomic.A.hg38 C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 0cfccd17-0acd-48fb-8c0d-a06960e62ab4.rna_seq.genomic.gdc_realn.bam 7566955755 BAM genomic harmonized CPTAC3 ae136086-6b5d-47a7-aea5-c35335042844 69b1238831234566f7282d0629e665eb { 'aliquot_tag': 'ALQ_20a5ebf8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02252.RNA-Seq.genomic.T.hg38 C3N-02252 LSCC RNA-Seq tumor CPT0128890009 c14748a8-04dc-4836-853e-cbf480520ebd.rna_seq.genomic.gdc_realn.bam 9441485426 BAM genomic harmonized CPTAC3 d3553246-41e0-41ac-bb8c-b010c5347c4f 5088d18a4acdd8122047917158a02cc2 { 'aliquot_tag': 'ALQ_e6e95a2c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02252.RNA-Seq.R1_L008.A C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 3296410991 FASTQ R1_L008 unaligned CPTAC3 b1be224d-7636-4277-b075-1c6022411068 4e3cff56c74b14257c532c85f820ede9 { 'aliquot_tag': 'ALQ_20a5ebf8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02252.RNA-Seq.R1_L008.T C3N-02252 LSCC RNA-Seq tumor CPT0128890009 180925_UNC32-K00270_0122_BHWNF7BBXX_ATGTCA_S31_L008_R1_001.fastq.gz 3998347361 FASTQ R1_L008 unaligned CPTAC3 0a22da20-b273-4596-a20d-078203ca6af0 d5dec3e669ad83768a3ccc74805d99ab { 'aliquot_tag': 'ALQ_e6e95a2c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02252.RNA-Seq.R2_L008.A C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 3391249468 FASTQ R2_L008 unaligned CPTAC3 8ce1fdd3-9efa-4b03-acea-96306e5a5e05 3ff4fac54a0f96768c1bc8ce99c0b553 { 'aliquot_tag': 'ALQ_20a5ebf8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02252.RNA-Seq.R2_L008.T C3N-02252 LSCC RNA-Seq tumor CPT0128890009 180925_UNC32-K00270_0122_BHWNF7BBXX_ATGTCA_S31_L008_R2_001.fastq.gz 4274121804 FASTQ R2_L008 unaligned CPTAC3 4e9b93f7-0b11-4435-a726-c00303a07aad 3d71de8230414780ea030cb707fa42d1 { 'aliquot_tag': 'ALQ_e6e95a2c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02252.RNA-Seq.genomic.A.hg38 C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 0cfccd17-0acd-48fb-8c0d-a06960e62ab4.rna_seq.genomic.gdc_realn.bam 7566955755 BAM genomic harmonized CPTAC3 536893d0-5137-4250-ae88-612313b9b2af 69b1238831234566f7282d0629e665eb { 'aliquot_tag': 'ALQ_20a5ebf8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02252.RNA-Seq.genomic.T.hg38 C3N-02252 LSCC RNA-Seq tumor CPT0128890009 c14748a8-04dc-4836-853e-cbf480520ebd.rna_seq.genomic.gdc_realn.bam 9441485426 BAM genomic harmonized CPTAC3 eca9cac6-140a-4e8e-8e4c-c9a5cf9ead34 5088d18a4acdd8122047917158a02cc2 { 'aliquot_tag': 'ALQ_e6e95a2c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02252.RNA-Seq.R1_L008.A C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L008_R1_001.fastq.gz 3296410991 FASTQ R1_L008 unaligned CPTAC3 b1be224d-7636-4277-b075-1c6022411068 4e3cff56c74b14257c532c85f820ede9 { 'aliquot_tag': 'ALQ_20a5ebf8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-02252.RNA-Seq.R1_L008.T C3N-02252 LSCC RNA-Seq tumor CPT0128890009 180925_UNC32-K00270_0122_BHWNF7BBXX_ATGTCA_S31_L008_R1_001.fastq.gz 3998347361 FASTQ R1_L008 unaligned CPTAC3 0a22da20-b273-4596-a20d-078203ca6af0 d5dec3e669ad83768a3ccc74805d99ab { 'aliquot_tag': 'ALQ_e6e95a2c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02252.RNA-Seq.R2_L008.A C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L008_R2_001.fastq.gz 3391249468 FASTQ R2_L008 unaligned CPTAC3 8ce1fdd3-9efa-4b03-acea-96306e5a5e05 3ff4fac54a0f96768c1bc8ce99c0b553 { 'aliquot_tag': 'ALQ_20a5ebf8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-02252.RNA-Seq.R2_L008.T C3N-02252 LSCC RNA-Seq tumor CPT0128890009 180925_UNC32-K00270_0122_BHWNF7BBXX_ATGTCA_S31_L008_R2_001.fastq.gz 4274121804 FASTQ R2_L008 unaligned CPTAC3 4e9b93f7-0b11-4435-a726-c00303a07aad 3d71de8230414780ea030cb707fa42d1 { 'aliquot_tag': 'ALQ_e6e95a2c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02252.RNA-Seq.transcriptome.A.hg38 C3N-02252 LSCC RNA-Seq tissue_normal CPT0128900009 0cfccd17-0acd-48fb-8c0d-a06960e62ab4.rna_seq.transcriptome.gdc_realn.bam 8162678110 BAM transcriptome harmonized CPTAC3 de7bc5aa-6cbb-450c-bf9a-e1d56c4e74ff 0026133edab7880ee15195af04adfa0e { 'aliquot_tag': 'ALQ_20a5ebf8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02252.RNA-Seq.transcriptome.T.hg38 C3N-02252 LSCC RNA-Seq tumor CPT0128890009 c14748a8-04dc-4836-853e-cbf480520ebd.rna_seq.transcriptome.gdc_realn.bam 10514509937 BAM transcriptome harmonized CPTAC3 2031e087-3be7-4d20-a443-112df8266820 b85d6deadf0d3ad702d42b91bc4f431f { 'aliquot_tag': 'ALQ_e6e95a2c', 'gdc_sample_type': 'Primary Tumor' } C3N-02252.WGS.A C3N-02252 LSCC WGS tissue_normal CPT0128900006 CPT0128900006.WholeGenome.RP-1303.bam 61334719204 BAM aligned CPTAC3 7029525e-de98-4bf0-a138-f6e01eb64d9b 030705b67f56877eb1ae179596c64cf1 { 'aliquot_tag': 'ALQ_b01af669', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -30123,18 +32216,21 @@ C3N-02253.miRNA-Seq.A C3N-02253 UCEC miRNA-Seq tissue_normal CPT0128800009 19013 C3N-02253.miRNA-Seq.A.hg38 C3N-02253 UCEC miRNA-Seq tissue_normal CPT0128800009 9239fe3a-631d-42a0-b522-8d2996efad50_mirnaseq_gdc_realn.bam 325331554 BAM harmonized CPTAC3 6951d97f-657f-41d5-bd3a-c8e3a499af08 700868f7b9ec089bf97981e6731664a5 { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02253.miRNA-Seq.T C3N-02253 UCEC miRNA-Seq tumor CPT0128770009 190108_UNC31-K00269_0176_AHYGLVBBXX_ATGTCA_S15_L004_R1_001.unaln.bam 177132841 BAM unaligned CPTAC3 a99d00b9-2c9e-4d19-9f44-64cb7d6e2c85 eda35a763a70c15add737ba34616c359 { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor' } C3N-02253.miRNA-Seq.T.hg38 C3N-02253 UCEC miRNA-Seq tumor CPT0128770009 480da82d-c89a-41f8-b993-905ccbb8ccb8_mirnaseq_gdc_realn.bam 192338554 BAM harmonized CPTAC3 1899fb65-90a8-4958-80a7-e4d35114a854 9577d45549da87ca115fc57f9241c6bf { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor' } -C3N-02253.RNA-Seq.chimeric.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 8fbd2430-3da5-40a2-87ee-ea05e57d9d84.rna_seq.chimeric.gdc_realn.bam 39620203 BAM chimeric harmonized CPTAC3 a83bcbfd-28e0-4442-98be-4cb33de3e390 06769f5732cc63ec61dfb49abc170d6c { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02253.RNA-Seq.chimeric.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9f7b1192-25db-4e9f-8d42-598ff2541f0d.rna_seq.chimeric.gdc_realn.bam 39898730 BAM chimeric harmonized CPTAC3 4f977954-3d90-4b12-9a29-7d515a025fb7 79f21f3ef697ea3e20bfb55d61651a7b { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor' } -C3N-02253.RNA-Seq.genomic.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 8fbd2430-3da5-40a2-87ee-ea05e57d9d84.rna_seq.genomic.gdc_realn.bam 9279890284 BAM genomic harmonized CPTAC3 8912346f-b38a-4c74-8a15-dd6916d02b18 606bc0756a5492dcde497cb687df2f18 { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02253.RNA-Seq.genomic.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9f7b1192-25db-4e9f-8d42-598ff2541f0d.rna_seq.genomic.gdc_realn.bam 8301610192 BAM genomic harmonized CPTAC3 76f44d0e-4815-4f48-924d-80efce254c9f 22deb123d7df38b1f4cd58ee960b85c4 { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor' } -C3N-02253.RNA-Seq.R1_L004.T C3N-02253 UCEC RNA-Seq tumor CPT0128770009 190115_UNC31-K00269_0179_BH357YBBXY_ATGTCA_S11_L004_R1_001.fastq.gz 3679101999 FASTQ R1_L004 unaligned CPTAC3 e71a2ecf-dd81-47f5-a063-d79e0bc6e1bf dc2b401cd30ed69c333f16b85aa6dea2 { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor' } -C3N-02253.RNA-Seq.R1_L007.A C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 190118_UNC32-K00270_0139_AH3CHKBBXY_TTAGGC_S1_L007_R1_001.fastq.gz 3856850625 FASTQ R1_L007 unaligned CPTAC3 c57ca5e7-a9e1-429c-8ee6-4bbb2c89cbb2 9eb34101c00f7a77cdae7dfbcd1dcb4f { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02253.RNA-Seq.R1_.T C3N-02253 UCEC RNA-Seq tumor CPT0128810001 20210723_P2_C10_WB7988-plate2_S34_R1_001.fastq.gz 6115737040 FASTQ R1_ unaligned CPTAC3 20508caa-5e1b-4467-b0ce-2aa137fdd866 774df2594c817af8532deaf70a431c1b { 'aliquot_tag': 'ALQ_d84299df', 'gdc_sample_type': 'Primary Tumor' } -C3N-02253.RNA-Seq.R2_L004.T C3N-02253 UCEC RNA-Seq tumor CPT0128770009 190115_UNC31-K00269_0179_BH357YBBXY_ATGTCA_S11_L004_R2_001.fastq.gz 3987206525 FASTQ R2_L004 unaligned CPTAC3 41124954-da18-4aae-84f8-046f67939d4d bf5ec741a794918b7a53a1517823b12a { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor' } -C3N-02253.RNA-Seq.R2_L007.A C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 190118_UNC32-K00270_0139_AH3CHKBBXY_TTAGGC_S1_L007_R2_001.fastq.gz 3785256286 FASTQ R2_L007 unaligned CPTAC3 98a946ed-681d-4a9f-82a1-2bdbdb4a9054 837e74693b353908acdaacef4dfe7ef3 { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02253.RNA-Seq.R2_.T C3N-02253 UCEC RNA-Seq tumor CPT0128810001 20210723_P2_C10_WB7988-plate2_S34_R2_001.fastq.gz 6304294811 FASTQ R2_ unaligned CPTAC3 861aa769-44fc-4901-9225-569323863452 03f2f1528f99ce4487743ceb79a20459 { 'aliquot_tag': 'ALQ_d84299df', 'gdc_sample_type': 'Primary Tumor' } -C3N-02253.RNA-Seq.transcriptome.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 8fbd2430-3da5-40a2-87ee-ea05e57d9d84.rna_seq.transcriptome.gdc_realn.bam 8024656985 BAM transcriptome harmonized CPTAC3 f8c1691c-f0cf-4abd-ba89-eac225959a9a 8a53b4f946bd6d78cefb08c5e35c6098 { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02253.RNA-Seq.transcriptome.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9f7b1192-25db-4e9f-8d42-598ff2541f0d.rna_seq.transcriptome.gdc_realn.bam 8731130612 BAM transcriptome harmonized CPTAC3 baf376bc-ade7-4c83-8b6b-902f20730d82 f69fde0149aeff502f282f3a670b9e68 { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor' } +C3N-02253.RNA-Seq.chimeric.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 e0a9f1a9-2886-4a59-aec1-469494879459.rna_seq.chimeric.gdc_realn.bam 39589055 BAM chimeric harmonized CPTAC3 e60127df-9aac-45c4-a428-d4fc5b60b99f 15351035ba41801de66a2b704e7e1b5a { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02253.RNA-Seq.chimeric.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9597122e-a2f1-44b9-b452-073bab597a6d.rna_seq.chimeric.gdc_realn.bam 39885081 BAM chimeric harmonized CPTAC3 e6fcc2ff-36ac-4efb-808c-5b774f41cc58 41183c80564da5c37c7a3876b8a05c90 { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor' } +C3N-02253.RNA-Seq.chimeric.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128810001 e50a1337-ed21-4385-adad-088cd111d278.rna_seq.chimeric.gdc_realn.bam 204348895 BAM chimeric harmonized CPTAC3 6789eb1a-d256-424c-818f-f624a3deec57 c0734cb6b049e8ab0340a1400b4013a1 { 'aliquot_tag': 'ALQ_d84299df', 'gdc_sample_type': 'Primary Tumor' } +C3N-02253.RNA-Seq.genomic.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 e0a9f1a9-2886-4a59-aec1-469494879459.rna_seq.genomic.gdc_realn.bam 9281535714 BAM genomic harmonized CPTAC3 f99cd6a0-b339-4c45-a922-2f1ae6fa9972 fee26381b9e0745c1d935539d149f86a { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02253.RNA-Seq.genomic.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9597122e-a2f1-44b9-b452-073bab597a6d.rna_seq.genomic.gdc_realn.bam 8303564555 BAM genomic harmonized CPTAC3 053a265c-e798-408a-ac59-734ebf9e340a 161a4a695a9d19093ab237f90e01d351 { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor' } +C3N-02253.RNA-Seq.genomic.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128810001 e50a1337-ed21-4385-adad-088cd111d278.rna_seq.genomic.gdc_realn.bam 10433836124 BAM genomic harmonized CPTAC3 392491e6-0df5-424b-8929-6db795811038 35a8961fc08e82204c908c2b9c382f73 { 'aliquot_tag': 'ALQ_d84299df', 'gdc_sample_type': 'Primary Tumor' } +C3N-02253.RNA-Seq.R1_L004.T C3N-02253 UCEC RNA-Seq tumor CPT0128770009 190115_UNC31-K00269_0179_BH357YBBXY_ATGTCA_S11_L004_R1_001.fastq.gz 3679101999 FASTQ R1_L004 unaligned CPTAC3 e71a2ecf-dd81-47f5-a063-d79e0bc6e1bf dc2b401cd30ed69c333f16b85aa6dea2 { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02253.RNA-Seq.R1_L007.A C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 190118_UNC32-K00270_0139_AH3CHKBBXY_TTAGGC_S1_L007_R1_001.fastq.gz 3856850625 FASTQ R1_L007 unaligned CPTAC3 c57ca5e7-a9e1-429c-8ee6-4bbb2c89cbb2 9eb34101c00f7a77cdae7dfbcd1dcb4f { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02253.RNA-Seq.R2_L004.T C3N-02253 UCEC RNA-Seq tumor CPT0128770009 190115_UNC31-K00269_0179_BH357YBBXY_ATGTCA_S11_L004_R2_001.fastq.gz 3987206525 FASTQ R2_L004 unaligned CPTAC3 41124954-da18-4aae-84f8-046f67939d4d bf5ec741a794918b7a53a1517823b12a { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02253.RNA-Seq.R2_L007.A C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 190118_UNC32-K00270_0139_AH3CHKBBXY_TTAGGC_S1_L007_R2_001.fastq.gz 3785256286 FASTQ R2_L007 unaligned CPTAC3 98a946ed-681d-4a9f-82a1-2bdbdb4a9054 837e74693b353908acdaacef4dfe7ef3 { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02253.RNA-Seq.T C3N-02253 UCEC RNA-Seq tumor CPT0128810001 20210723_P2_C10_WB7988-plate2_S34_R1_001.fastq.gz 6115737040 FASTQ unaligned CPTAC3 20508caa-5e1b-4467-b0ce-2aa137fdd866 774df2594c817af8532deaf70a431c1b +C3N-02253.RNA-Seq.T C3N-02253 UCEC RNA-Seq tumor CPT0128810001 20210723_P2_C10_WB7988-plate2_S34_R2_001.fastq.gz 6304294811 FASTQ unaligned CPTAC3 861aa769-44fc-4901-9225-569323863452 03f2f1528f99ce4487743ceb79a20459 +C3N-02253.RNA-Seq.transcriptome.A.hg38 C3N-02253 UCEC RNA-Seq tissue_normal CPT0128800009 e0a9f1a9-2886-4a59-aec1-469494879459.rna_seq.transcriptome.gdc_realn.bam 9199817027 BAM transcriptome harmonized CPTAC3 8b0b6e12-c8d3-4297-90f5-abb8d658f549 5835924b7c7d95105d869cd1cb6e7182 { 'aliquot_tag': 'ALQ_ebf9385d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02253.RNA-Seq.transcriptome.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128770009 9597122e-a2f1-44b9-b452-073bab597a6d.rna_seq.transcriptome.gdc_realn.bam 9951404581 BAM transcriptome harmonized CPTAC3 6e0e95be-abbf-4ab0-8a6a-7d3ad1467e92 c281660d1c4290fef693399857246614 { 'aliquot_tag': 'ALQ_a88f5698', 'gdc_sample_type': 'Primary Tumor' } +C3N-02253.RNA-Seq.transcriptome.T.hg38 C3N-02253 UCEC RNA-Seq tumor CPT0128810001 e50a1337-ed21-4385-adad-088cd111d278.rna_seq.transcriptome.gdc_realn.bam 5668466188 BAM transcriptome harmonized CPTAC3 747362f5-1ac3-4a5b-933f-b901674e76c4 440cf9ff4f042b05c95dcdab5cf0bf1c { 'aliquot_tag': 'ALQ_d84299df', 'gdc_sample_type': 'Primary Tumor' } C3N-02253.WGS.N C3N-02253 UCEC WGS blood_normal CPT0130760002 CPT0130760002.WholeGenome.RP-1303.bam 65021028979 BAM aligned CPTAC3 fd595034-4369-4135-b6a8-0d80be00d4f6 deb1478032d108cae603d2a1e76cc9c0 { 'aliquot_tag': 'ALQ_fd78e859', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02253.WGS.N.hg38 C3N-02253 UCEC WGS blood_normal CPT0130760002 0ba84a92-8c3f-4d2f-b252-94f19d64ac7f_wgs_gdc_realn.bam 95128194201 BAM harmonized CPTAC3 9593cfb4-8def-403d-a65c-f798f7b9c9b8 334b0a7a55e0f324cb51b546be9d624f { 'aliquot_tag': 'ALQ_fd78e859', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02253.WGS.T C3N-02253 UCEC WGS tumor CPT0128770006 CPT0128770006.WholeGenome.RP-1303.bam 52960537428 BAM aligned CPTAC3 2659fab8-3423-4ace-aebe-307e9bc19cff 3e44650c27ca019dccc7a1abffb5d5f5 { 'aliquot_tag': 'ALQ_38304b09', 'gdc_sample_type': 'Primary Tumor' } @@ -30150,9 +32246,9 @@ C3N-02255.MethArray.Red.T C3N-02255 GBM Methylation Array tumor CPT0182550006 20 C3N-02255.miRNA-Seq.T C3N-02255 GBM miRNA-Seq tumor CPT0182550009 181219_UNC31-K00269_0173_BHYGJJBBXX_ACAGTG_S5_L003_R1_001.unaln.bam 312009928 BAM unaligned CPTAC3 5182d41d-57f1-4726-8c6a-d25544d9a67c 89d5b9bcdde1b9fa47569e2e0d1c7a28 { 'aliquot_tag': 'ALQ_aa37e775', 'gdc_sample_type': 'Primary Tumor' } C3N-02255.miRNA-Seq.T.hg38 C3N-02255 GBM miRNA-Seq tumor CPT0182550009 dcc3b395-59e5-41fa-aacd-d6d634f890d3_mirnaseq_gdc_realn.bam 353657463 BAM harmonized CPTAC3 cea65a8d-f014-48c9-bdea-3b924ae84479 95df2511b179575d1033ce3be20a6443 { 'aliquot_tag': 'ALQ_aa37e775', 'gdc_sample_type': 'Primary Tumor' } C3N-02255.RNA-Seq.chimeric.T.hg38 C3N-02255 GBM RNA-Seq tumor CPT0182550009 f3584614-45c7-412e-abf4-2b18e0a486d2.rna_seq.chimeric.gdc_realn.bam 142383156 BAM chimeric harmonized CPTAC3 7e28cbad-5618-45a0-a0dc-539fd39cd4f9 8a8c664649c98025cd1b16369c973c4b { 'aliquot_tag': 'ALQ_aa37e775', 'gdc_sample_type': 'Primary Tumor' } -C3N-02255.RNA-Seq.genomic.T.hg38 C3N-02255 GBM RNA-Seq tumor CPT0182550009 f3584614-45c7-412e-abf4-2b18e0a486d2.rna_seq.genomic.gdc_realn.bam 7736897389 BAM genomic harmonized CPTAC3 490c67a6-7329-45c3-bccf-04aef02a2149 c46d2e6574f5833e757b49a175521ce4 { 'aliquot_tag': 'ALQ_aa37e775', 'gdc_sample_type': 'Primary Tumor' } -C3N-02255.RNA-Seq.R1_L002.T C3N-02255 GBM RNA-Seq tumor CPT0182550009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3704735928 FASTQ R1_L002 unaligned CPTAC3 6ddd2ee9-f842-40ce-9ae4-9a0a2c165f11 75aa8bfab2a44f54f7f8ae6cc2f7cb06 { 'aliquot_tag': 'ALQ_aa37e775', 'gdc_sample_type': 'Primary Tumor' } -C3N-02255.RNA-Seq.R2_L002.T C3N-02255 GBM RNA-Seq tumor CPT0182550009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 3951356121 FASTQ R2_L002 unaligned CPTAC3 93c7ca01-341f-4072-a3b1-aee0d1b9acda dd1d9e95c40c5c30ba71ed8c13814b8c { 'aliquot_tag': 'ALQ_aa37e775', 'gdc_sample_type': 'Primary Tumor' } +C3N-02255.RNA-Seq.genomic.T.hg38 C3N-02255 GBM RNA-Seq tumor CPT0182550009 f3584614-45c7-412e-abf4-2b18e0a486d2.rna_seq.genomic.gdc_realn.bam 7736897389 BAM genomic harmonized CPTAC3 d417852d-f81d-43f4-8f88-60b672a1be1c c46d2e6574f5833e757b49a175521ce4 { 'aliquot_tag': 'ALQ_aa37e775', 'gdc_sample_type': 'Primary Tumor' } +C3N-02255.RNA-Seq.R1_L002.T C3N-02255 GBM RNA-Seq tumor CPT0182550009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3704735928 FASTQ R1_L002 unaligned CPTAC3 6ddd2ee9-f842-40ce-9ae4-9a0a2c165f11 75aa8bfab2a44f54f7f8ae6cc2f7cb06 { 'aliquot_tag': 'ALQ_aa37e775', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02255.RNA-Seq.R2_L002.T C3N-02255 GBM RNA-Seq tumor CPT0182550009 181002_UNC31-K00269_0156_AHWN3HBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 3951356121 FASTQ R2_L002 unaligned CPTAC3 93c7ca01-341f-4072-a3b1-aee0d1b9acda dd1d9e95c40c5c30ba71ed8c13814b8c { 'aliquot_tag': 'ALQ_aa37e775', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-02255.RNA-Seq.transcriptome.T.hg38 C3N-02255 GBM RNA-Seq tumor CPT0182550009 f3584614-45c7-412e-abf4-2b18e0a486d2.rna_seq.transcriptome.gdc_realn.bam 8285152573 BAM transcriptome harmonized CPTAC3 f1f6f2a4-ca73-4866-9060-b7fca2d60ab8 731e92c31c134944ae14219653fd7442 { 'aliquot_tag': 'ALQ_aa37e775', 'gdc_sample_type': 'Primary Tumor' } C3N-02255.WGS.N C3N-02255 GBM WGS blood_normal CPT0182570002 CPT0182570002.WholeGenome.RP-1303.bam 55148462856 BAM aligned CPTAC3 727a41a7-7dfe-4899-acfa-6a61c64e3343 68e61783c60a1665786eb13c9181e797 { 'aliquot_tag': 'ALQ_47256d9d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02255.WGS.N.hg38 C3N-02255 GBM WGS blood_normal CPT0182570002 49118b25-320a-4b67-abf6-7c7907ee1533_wgs_gdc_realn.bam 80547533085 BAM harmonized CPTAC3 1e62907e-480f-4908-a82d-c54833da83c9 79545754bb61f78d8c48f7921a8a996a { 'aliquot_tag': 'ALQ_47256d9d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -30167,9 +32263,9 @@ C3N-02256.MethArray.Red.T C3N-02256 GBM Methylation Array tumor CPT0182580006 20 C3N-02256.miRNA-Seq.T C3N-02256 GBM miRNA-Seq tumor CPT0182580009 181219_UNC31-K00269_0173_BHYGJJBBXX_GCCAAT_S6_L003_R1_001.unaln.bam 273657756 BAM unaligned CPTAC3 517be51e-f72f-450e-a512-2ca6c3375efc fa366322bb6a684be83b71fa716477b3 { 'aliquot_tag': 'ALQ_52a723c4', 'gdc_sample_type': 'Primary Tumor' } C3N-02256.miRNA-Seq.T.hg38 C3N-02256 GBM miRNA-Seq tumor CPT0182580009 61b363bf-d56a-49c8-b14c-4c6b8c7ddd4c_mirnaseq_gdc_realn.bam 305916167 BAM harmonized CPTAC3 ee6d3343-1de8-4403-a3f5-f34d6d828956 774ac13d34fff6dd5058822de4374a42 { 'aliquot_tag': 'ALQ_52a723c4', 'gdc_sample_type': 'Primary Tumor' } C3N-02256.RNA-Seq.chimeric.T.hg38 C3N-02256 GBM RNA-Seq tumor CPT0182580009 0d7ea8df-2d35-4e15-bbef-4eb3d884d9c7.rna_seq.chimeric.gdc_realn.bam 146882379 BAM chimeric harmonized CPTAC3 a1d8bfa9-39c9-4541-9d39-ef36308442e0 af414fbbacfc01f0bd4a68beba989bd9 { 'aliquot_tag': 'ALQ_52a723c4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02256.RNA-Seq.genomic.T.hg38 C3N-02256 GBM RNA-Seq tumor CPT0182580009 0d7ea8df-2d35-4e15-bbef-4eb3d884d9c7.rna_seq.genomic.gdc_realn.bam 9227007710 BAM genomic harmonized CPTAC3 6fd048ab-9d93-4a33-bcb4-3335801d39d3 e4e37838b3ea463fff78a3799b1b6a27 { 'aliquot_tag': 'ALQ_52a723c4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02256.RNA-Seq.R1_L002.T C3N-02256 GBM RNA-Seq tumor CPT0182580009 181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R1_001.fastq.gz 4445956614 FASTQ R1_L002 unaligned CPTAC3 88d33533-fe80-485b-a2b7-a81ff8729921 3a2a94ceb35a242118341130a39be4f8 { 'aliquot_tag': 'ALQ_52a723c4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02256.RNA-Seq.R2_L002.T C3N-02256 GBM RNA-Seq tumor CPT0182580009 181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R2_001.fastq.gz 4826728081 FASTQ R2_L002 unaligned CPTAC3 7855be61-2390-40e0-8b9a-54eb82b0de93 207325214f7d5425cd7c4e7d8719604d { 'aliquot_tag': 'ALQ_52a723c4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02256.RNA-Seq.genomic.T.hg38 C3N-02256 GBM RNA-Seq tumor CPT0182580009 0d7ea8df-2d35-4e15-bbef-4eb3d884d9c7.rna_seq.genomic.gdc_realn.bam 9227007710 BAM genomic harmonized CPTAC3 82344652-78af-4786-a2d1-aae64753de41 e4e37838b3ea463fff78a3799b1b6a27 { 'aliquot_tag': 'ALQ_52a723c4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02256.RNA-Seq.R1_L002.T C3N-02256 GBM RNA-Seq tumor CPT0182580009 181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R1_001.fastq.gz 4445956614 FASTQ R1_L002 unaligned CPTAC3 88d33533-fe80-485b-a2b7-a81ff8729921 3a2a94ceb35a242118341130a39be4f8 { 'aliquot_tag': 'ALQ_52a723c4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02256.RNA-Seq.R2_L002.T C3N-02256 GBM RNA-Seq tumor CPT0182580009 181002_UNC31-K00269_0156_AHWN3HBBXX_GCCAAT_S8_L002_R2_001.fastq.gz 4826728081 FASTQ R2_L002 unaligned CPTAC3 7855be61-2390-40e0-8b9a-54eb82b0de93 207325214f7d5425cd7c4e7d8719604d { 'aliquot_tag': 'ALQ_52a723c4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-02256.RNA-Seq.transcriptome.T.hg38 C3N-02256 GBM RNA-Seq tumor CPT0182580009 0d7ea8df-2d35-4e15-bbef-4eb3d884d9c7.rna_seq.transcriptome.gdc_realn.bam 11891831094 BAM transcriptome harmonized CPTAC3 d2c10245-d204-4533-8629-17162d73ff7c 86a0107b9773036c080b40801a48e015 { 'aliquot_tag': 'ALQ_52a723c4', 'gdc_sample_type': 'Primary Tumor' } C3N-02256.WGS.N C3N-02256 GBM WGS blood_normal CPT0182600002 CPT0182600002.WholeGenome.RP-1303.bam 62174645424 BAM aligned CPTAC3 30b0e8e5-6cb3-4357-91ef-4cc009a56349 798d5f4ce5ac1e09277e4dfadb973204 { 'aliquot_tag': 'ALQ_7391c323', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02256.WGS.N.hg38 C3N-02256 GBM WGS blood_normal CPT0182600002 75eeaabd-f938-4f59-afb4-31dd6341c6ff_wgs_gdc_realn.bam 90940565795 BAM harmonized CPTAC3 138d8c4d-3a80-49ef-83fd-6bd8d8677c2a 1940dc7397abd8a478171f8295850106 { 'aliquot_tag': 'ALQ_7391c323', 'gdc_sample_type': 'Blood Derived Normal' } @@ -30183,11 +32279,11 @@ C3N-02259.MethArray.Green.T C3N-02259 GBM Methylation Array tumor CPT0244830006 C3N-02259.MethArray.Red.T C3N-02259 GBM Methylation Array tumor CPT0244830006 204372030070_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 6391abdd-786e-4c87-a3fb-afad3b1052ba 1b19c24d2316f9a21c80ff1fce9d0c4d { 'aliquot_tag': 'ALQ_4a4002a', 'gdc_sample_type': 'Primary Tumor' } C3N-02259.miRNA-Seq.T C3N-02259 GBM miRNA-Seq tumor CPT0244830013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTCAGA_S40_L008_R1_001.unaln.bam 167476066 BAM unaligned CPTAC3 aa27227b-33ff-4471-b8dd-1b0e68037e2b 11cfc1a989f3e0986ed2a0436c7808ff { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor' } C3N-02259.miRNA-Seq.T.hg38 C3N-02259 GBM miRNA-Seq tumor CPT0244830013 2229bd80-e569-43c6-a683-c0b2b29de25d_mirnaseq_gdc_realn.bam 184461994 BAM harmonized CPTAC3 97c8d814-ca7e-4c7e-976e-ee8a45b06e39 57d5afcc2fae00d2c0fc72cc41159a99 { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02259.RNA-Seq.chimeric.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 c2747497-7a16-4659-8bc7-ff445c40fd17.rna_seq.chimeric.gdc_realn.bam 29052637 BAM chimeric harmonized CPTAC3 50c92039-e8ae-4a7f-82d3-c8f05728e3d9 428e766c182c19cf6a4338bffbb5c3a1 { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02259.RNA-Seq.genomic.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 c2747497-7a16-4659-8bc7-ff445c40fd17.rna_seq.genomic.gdc_realn.bam 7621239847 BAM genomic harmonized CPTAC3 5e23c3a0-1a7b-4325-b034-8bb41bd1a1e7 d3023b03b49657694c94cc9480e4b175 { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02259.RNA-Seq.R1_L008.T C3N-02259 GBM RNA-Seq tumor CPT0244830013 200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R1_001.fastq.gz 3685625755 FASTQ R1_L008 unaligned CPTAC3 611120e0-9d64-40e8-ad9f-7a7ae8092067 fea2f4e7d6e1c9406c7a22597c1b298e { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02259.RNA-Seq.R2_L008.T C3N-02259 GBM RNA-Seq tumor CPT0244830013 200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R2_001.fastq.gz 3988346570 FASTQ R2_L008 unaligned CPTAC3 11e7d48b-1bfe-4892-8eca-6a22a1b8649a 6f5dee400ccd322466f6252db61a961c { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02259.RNA-Seq.transcriptome.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 c2747497-7a16-4659-8bc7-ff445c40fd17.rna_seq.transcriptome.gdc_realn.bam 8108297559 BAM transcriptome harmonized CPTAC3 d1a55788-718d-4955-a1b4-a3a89203708a 116b918d124c51e150bf045bf07b0943 { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02259.RNA-Seq.chimeric.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 370c4093-a738-4487-8f5f-e96476fc7d28.rna_seq.chimeric.gdc_realn.bam 29036519 BAM chimeric harmonized CPTAC3 45fb311b-80d5-4644-be72-0685ec2832ba cbe488a2e90266efe9f4bf24291c234e { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02259.RNA-Seq.genomic.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 370c4093-a738-4487-8f5f-e96476fc7d28.rna_seq.genomic.gdc_realn.bam 7622139540 BAM genomic harmonized CPTAC3 828f02b1-0b7b-4249-af9e-6d094313676b 68d20bcf5d4d6585fde881ea3bce406e { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02259.RNA-Seq.R1_L008.T C3N-02259 GBM RNA-Seq tumor CPT0244830013 200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R1_001.fastq.gz 3685625755 FASTQ R1_L008 unaligned CPTAC3 611120e0-9d64-40e8-ad9f-7a7ae8092067 fea2f4e7d6e1c9406c7a22597c1b298e { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02259.RNA-Seq.R2_L008.T C3N-02259 GBM RNA-Seq tumor CPT0244830013 200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R2_001.fastq.gz 3988346570 FASTQ R2_L008 unaligned CPTAC3 11e7d48b-1bfe-4892-8eca-6a22a1b8649a 6f5dee400ccd322466f6252db61a961c { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02259.RNA-Seq.transcriptome.T.hg38 C3N-02259 GBM RNA-Seq tumor CPT0244830013 370c4093-a738-4487-8f5f-e96476fc7d28.rna_seq.transcriptome.gdc_realn.bam 9328409186 BAM transcriptome harmonized CPTAC3 41901d5d-dce6-4fe8-8582-d54fb6ae0e3d 17aa8c9dd88f9c1bf6e32c422535c514 { 'aliquot_tag': 'ALQ_6dd5c5e4', 'gdc_sample_type': 'Primary Tumor' } C3N-02259.WGS.N C3N-02259 GBM WGS blood_normal CPT0244850002 CPT0244850002.WholeGenome.RP-2158.bam 22539611729 BAM aligned CPTAC3 651f92d8-0c95-45bc-a251-3dabda9b9c3e fe9cbb6d65312b4df2c3020df2f1feac { 'aliquot_tag': 'ALQ_8c893193', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02259.WGS.N.hg38 C3N-02259 GBM WGS blood_normal CPT0244850002 6ba5ae6a-aa56-4806-b46b-c46b0169f107_wgs_gdc_realn.bam 65671654026 BAM harmonized CPTAC3 80bd2584-7377-4a12-b6e7-e6f329974607 12cb4b76e3a68660e5d8b249761f219a { 'aliquot_tag': 'ALQ_8c893193', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02259.WGS.T C3N-02259 GBM WGS tumor CPT0244830006 CPT0244830006.WholeGenome.RP-2158.bam 22620549920 BAM aligned CPTAC3 ca024786-6ce2-4a4c-9f7d-c54c9d4221c2 3c2ede46a0b1c99900ad79edb284d398 { 'aliquot_tag': 'ALQ_4a4002a', 'gdc_sample_type': 'Primary Tumor' } @@ -30204,16 +32300,16 @@ C3N-02261.miRNA-Seq.A C3N-02261 CCRCC miRNA-Seq tissue_normal CPT0381600006 2101 C3N-02261.miRNA-Seq.A.hg38 C3N-02261 CCRCC miRNA-Seq tissue_normal CPT0381600006 74919460-7a84-446c-b4d1-a87e92f22ebf_mirnaseq_gdc_realn.bam 257740456 BAM harmonized CPTAC3 65996faf-3402-46d2-86ee-b09eeba4858a 910e161f0a38ba3549c04037a2113700 { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02261.miRNA-Seq.T C3N-02261 CCRCC miRNA-Seq tumor CPT0381550006 210111_UNC32-K00270_0270_AHJ5LKBBXY_AGTTCC_S3_L001_R1_001.unaln.bam 290238407 BAM unaligned CPTAC3 2c91d7f9-60b7-42ef-8162-b5bfbd1190a7 07f0c8cf53af77725edc597cc4d3d326 { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor' } C3N-02261.miRNA-Seq.T.hg38 C3N-02261 CCRCC miRNA-Seq tumor CPT0381550006 e954a129-7d0c-4c7f-90e6-760f531c02cf_mirnaseq_gdc_realn.bam 310243974 BAM harmonized CPTAC3 67146395-2ed8-48cd-9bed-4152114bc544 b82ad165fb625a11d1347773de8b3a52 { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor' } -C3N-02261.RNA-Seq.chimeric.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 fa16883f-2fa0-4204-ba8b-c79c4990ea04.rna_seq.chimeric.gdc_realn.bam 393939475 BAM chimeric harmonized CPTAC3 75778627-5f8e-4b19-9396-7ca254cfabd1 7208c9619d5b4c5ff9925f743f3ac067 { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02261.RNA-Seq.chimeric.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 1f616bbe-fa5b-43f5-a6c3-440d81629727.rna_seq.chimeric.gdc_realn.bam 341098331 BAM chimeric harmonized CPTAC3 0cbf0cbe-f124-4fa7-99cf-1bd2abcebd2d c648c4034ffc29bdb6838219e4bd4d94 { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor' } -C3N-02261.RNA-Seq.genomic.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 fa16883f-2fa0-4204-ba8b-c79c4990ea04.rna_seq.genomic.gdc_realn.bam 8127403093 BAM genomic harmonized CPTAC3 2dc4f364-447d-420a-bd3d-bf9ca90012b0 6f30394eabec504c300fe0662481121b { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02261.RNA-Seq.genomic.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 1f616bbe-fa5b-43f5-a6c3-440d81629727.rna_seq.genomic.gdc_realn.bam 7874541532 BAM genomic harmonized CPTAC3 54fc2e15-3d09-426e-b6b0-92cddf4f39ef 62093f72cfcccf5c33f161ea2002af61 { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor' } -C3N-02261.RNA-Seq.R1_L006.A C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCTTAAG-TCGTGACC_S23_L006_R1_001.fastq.gz 3830631847 FASTQ R1_L006 unaligned CPTAC3 815b2149-ece4-4c82-8dfb-63b2d0af96e9 ce603dafd0d871cfd9b1c57fbac98789 { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02261.RNA-Seq.R1_L006.T C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTGGACTC-GGAAGCAG_S24_L006_R1_001.fastq.gz 3759868376 FASTQ R1_L006 unaligned CPTAC3 e42c45c9-4e7a-4ab5-98f0-901f0e838227 8343b1db3bed5c9964dd29c6bf85ea6a { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor' } -C3N-02261.RNA-Seq.R2_L006.A C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCTTAAG-TCGTGACC_S23_L006_R2_001.fastq.gz 4205662996 FASTQ R2_L006 unaligned CPTAC3 c027bd21-be0e-4223-96f4-1289dcdef549 b7fb6fbab81707bdf760b6c49177f8d4 { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02261.RNA-Seq.R2_L006.T C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTGGACTC-GGAAGCAG_S24_L006_R2_001.fastq.gz 4267385037 FASTQ R2_L006 unaligned CPTAC3 86834635-3448-41b6-8b88-90c7ed3edf2c bd699d7792705491314bd80da997c59e { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor' } -C3N-02261.RNA-Seq.transcriptome.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 fa16883f-2fa0-4204-ba8b-c79c4990ea04.rna_seq.transcriptome.gdc_realn.bam 8037158853 BAM transcriptome harmonized CPTAC3 34af4a0e-4fd1-4267-b15b-1a110bd8d5ea fcaf88904e8a01e0357166606f31d481 { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02261.RNA-Seq.transcriptome.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 1f616bbe-fa5b-43f5-a6c3-440d81629727.rna_seq.transcriptome.gdc_realn.bam 7679384756 BAM transcriptome harmonized CPTAC3 4871f909-7c32-48ad-8ca5-0fd8a0702f67 eaba356b42cf5dbbb781827cfe4373fd { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor' } +C3N-02261.RNA-Seq.chimeric.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 bb528b38-5c0a-461e-8dd7-1cc2806dfcf4.rna_seq.chimeric.gdc_realn.bam 393937091 BAM chimeric harmonized CPTAC3 c10d2309-b2d6-4a8b-875e-43cb66ce210d 24b0315e7fd8ff58e2b94009e579420a { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02261.RNA-Seq.chimeric.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 764b5c1a-7045-4beb-a53f-bd74ef4091e8.rna_seq.chimeric.gdc_realn.bam 341106313 BAM chimeric harmonized CPTAC3 93755e53-ed0b-49a2-b067-4b13334dae32 485eb458e9aafb627410930d260d2f4f { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor' } +C3N-02261.RNA-Seq.genomic.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 bb528b38-5c0a-461e-8dd7-1cc2806dfcf4.rna_seq.genomic.gdc_realn.bam 8132970039 BAM genomic harmonized CPTAC3 a123415e-841f-496c-bb99-4665091118ca bf5eee740ab41276071b64bbcb1d4f03 { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02261.RNA-Seq.genomic.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 764b5c1a-7045-4beb-a53f-bd74ef4091e8.rna_seq.genomic.gdc_realn.bam 7880672677 BAM genomic harmonized CPTAC3 873cbba5-d15c-4553-aa75-1024204806db b5b9ea8cf9fb085d1e167d4860328c45 { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor' } +C3N-02261.RNA-Seq.R1_L006.A C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCTTAAG-TCGTGACC_S23_L006_R1_001.fastq.gz 3830631847 FASTQ R1_L006 unaligned CPTAC3 815b2149-ece4-4c82-8dfb-63b2d0af96e9 ce603dafd0d871cfd9b1c57fbac98789 { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02261.RNA-Seq.R1_L006.T C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTGGACTC-GGAAGCAG_S24_L006_R1_001.fastq.gz 3759868376 FASTQ R1_L006 unaligned CPTAC3 e42c45c9-4e7a-4ab5-98f0-901f0e838227 8343b1db3bed5c9964dd29c6bf85ea6a { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02261.RNA-Seq.R2_L006.A C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 210105_UNC32-K00270_0269_BHKN5MBBXY_GGCTTAAG-TCGTGACC_S23_L006_R2_001.fastq.gz 4205662996 FASTQ R2_L006 unaligned CPTAC3 c027bd21-be0e-4223-96f4-1289dcdef549 b7fb6fbab81707bdf760b6c49177f8d4 { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02261.RNA-Seq.R2_L006.T C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 210105_UNC32-K00270_0269_BHKN5MBBXY_TTGGACTC-GGAAGCAG_S24_L006_R2_001.fastq.gz 4267385037 FASTQ R2_L006 unaligned CPTAC3 86834635-3448-41b6-8b88-90c7ed3edf2c bd699d7792705491314bd80da997c59e { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02261.RNA-Seq.transcriptome.A.hg38 C3N-02261 CCRCC RNA-Seq tissue_normal CPT0381600006 bb528b38-5c0a-461e-8dd7-1cc2806dfcf4.rna_seq.transcriptome.gdc_realn.bam 9196583571 BAM transcriptome harmonized CPTAC3 7ac481eb-1107-4472-8c33-bfe4b3012b2e dd04465d739c7a1f05666ad5a36e14b1 { 'aliquot_tag': 'ALQ_6be23521', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02261.RNA-Seq.transcriptome.T.hg38 C3N-02261 CCRCC RNA-Seq tumor CPT0381550006 764b5c1a-7045-4beb-a53f-bd74ef4091e8.rna_seq.transcriptome.gdc_realn.bam 8854136088 BAM transcriptome harmonized CPTAC3 a9cbf911-4245-40dd-a024-4103fe3270bd e33575fc9b5342f5d51e6df85b2fbd17 { 'aliquot_tag': 'ALQ_2596c8ff', 'gdc_sample_type': 'Primary Tumor' } C3N-02261.WGS.N C3N-02261 CCRCC WGS blood_normal CPT0381730002 CPT0381730002.WholeGenome.RP-2158.bam 24137556197 BAM aligned CPTAC3 94c99a5b-90e5-4236-b65b-87a7809b6d84 f8abb11a9cf2cc2fc7610053c932ab05 { 'aliquot_tag': 'ALQ_e073584d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02261.WGS.N.hg38 C3N-02261 CCRCC WGS blood_normal CPT0381730002 06132899-2648-4344-b26a-61e507aaf27c_wgs_gdc_realn.bam 70371090283 BAM harmonized CPTAC3 71556c23-559a-4f70-979b-c2144aa2321a 95c6a899f3ad1a4024a0c5f73850ec69 { 'aliquot_tag': 'ALQ_e073584d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02261.WGS.T C3N-02261 CCRCC WGS tumor CPT0381550009 CPT0381550009.WholeGenome.RP-2158.bam 21913075787 BAM aligned CPTAC3 a40f848a-7aff-4654-b943-d04335d9de1c 4b45574f5baf0727fdb8e7548bc02fbd { 'aliquot_tag': 'ALQ_b529d56e', 'gdc_sample_type': 'Primary Tumor' } @@ -30228,11 +32324,11 @@ C3N-02262.MethArray.Green.T C3N-02262 CCRCC Methylation Array tumor CPT018814001 C3N-02262.MethArray.Red.T C3N-02262 CCRCC Methylation Array tumor CPT0188140011 203219640102_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 ea84492b-2b2d-4330-aa0f-84fb4a13046c 564b330a55805fceefd07bd7f887213c { 'aliquot_tag': 'ALQ_bf766aee', 'gdc_sample_type': 'Primary Tumor' } C3N-02262.miRNA-Seq.T C3N-02262 CCRCC miRNA-Seq tumor CPT0188140009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACGAT_S33_L005_R1_001.unaln.bam 226634328 BAM unaligned CPTAC3 924827c0-8a3c-48c2-ae1e-91858389a065 938acf5ccfcc40fb7fd7b9e371110307 { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor' } C3N-02262.miRNA-Seq.T.hg38 C3N-02262 CCRCC miRNA-Seq tumor CPT0188140009 f21056f2-ea37-4161-9619-ba5343c80624_mirnaseq_gdc_realn.bam 242644297 BAM harmonized CPTAC3 225aef3d-8429-4603-b018-9fd16f90ae91 45ed65a5649563c5059be2774aa23445 { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02262.RNA-Seq.chimeric.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 8a11240e-9bc0-473d-8d25-91c686d70525.rna_seq.chimeric.gdc_realn.bam 30874489 BAM chimeric harmonized CPTAC3 ed7cdeb9-794c-48c1-98bd-4ec217423025 0cf7c3df275b9efede45da232f73675a { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02262.RNA-Seq.genomic.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 8a11240e-9bc0-473d-8d25-91c686d70525.rna_seq.genomic.gdc_realn.bam 7172849760 BAM genomic harmonized CPTAC3 3250f4b5-d9e9-4cf9-8475-8e4721e1d725 1fbf464c4e656fc56d7bb11dd0c9cd76 { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02262.RNA-Seq.R1_L006.T C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 190123_UNC31-K00269_0183_BH3L7LBBXY_CAGATC_S21_L006_R1_001.fastq.gz 3383668401 FASTQ R1_L006 unaligned CPTAC3 5500f194-9b8d-439f-8e66-d8e8c01ce445 4389ccb94eee61a8a97a2bab48075ced { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02262.RNA-Seq.R2_L006.T C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 190123_UNC31-K00269_0183_BH3L7LBBXY_CAGATC_S21_L006_R2_001.fastq.gz 3615632431 FASTQ R2_L006 unaligned CPTAC3 089b6abe-2fc7-4878-97b8-cf6f55a06005 a9e7880ac1f9f06092538f23565bb60b { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02262.RNA-Seq.transcriptome.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 8a11240e-9bc0-473d-8d25-91c686d70525.rna_seq.transcriptome.gdc_realn.bam 8509084561 BAM transcriptome harmonized CPTAC3 928e3bdd-2643-4fc0-831f-aab494b3b9b2 004cb5a95b032dacabbf4c4a36fff667 { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02262.RNA-Seq.chimeric.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 9c8748ce-b7ca-4c56-8975-de2657355531.rna_seq.chimeric.gdc_realn.bam 30853967 BAM chimeric harmonized CPTAC3 95081f2d-b45c-4dd5-a565-d988e0f6ed09 2855cd43fcd05256b398ef8fe9e40dff { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02262.RNA-Seq.genomic.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 9c8748ce-b7ca-4c56-8975-de2657355531.rna_seq.genomic.gdc_realn.bam 7174577689 BAM genomic harmonized CPTAC3 bfb6d370-c46d-4479-8eee-96b09df1a164 91f9081f4dbbee02bff6de3b412c4d59 { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02262.RNA-Seq.R1_L006.T C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 190123_UNC31-K00269_0183_BH3L7LBBXY_CAGATC_S21_L006_R1_001.fastq.gz 3383668401 FASTQ R1_L006 unaligned CPTAC3 5500f194-9b8d-439f-8e66-d8e8c01ce445 4389ccb94eee61a8a97a2bab48075ced { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02262.RNA-Seq.R2_L006.T C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 190123_UNC31-K00269_0183_BH3L7LBBXY_CAGATC_S21_L006_R2_001.fastq.gz 3615632431 FASTQ R2_L006 unaligned CPTAC3 089b6abe-2fc7-4878-97b8-cf6f55a06005 a9e7880ac1f9f06092538f23565bb60b { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02262.RNA-Seq.transcriptome.T.hg38 C3N-02262 CCRCC RNA-Seq tumor CPT0188140009 9c8748ce-b7ca-4c56-8975-de2657355531.rna_seq.transcriptome.gdc_realn.bam 9621366897 BAM transcriptome harmonized CPTAC3 d7c88833-50b3-4c86-a65b-f30bc2491c54 c1d02e77f33d85c8e9492fb7ecaf9d8f { 'aliquot_tag': 'ALQ_a8b6d39d', 'gdc_sample_type': 'Primary Tumor' } C3N-02262.WGS.N C3N-02262 CCRCC WGS blood_normal CPT0188170002 CPT0188170002.WholeGenome.RP-1303.bam 58426763747 BAM aligned CPTAC3 7dc08de4-c05c-4590-9712-fe2f32fcf103 995206aa457e5ef4079f84328b76baa0 { 'aliquot_tag': 'ALQ_78c470c5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02262.WGS.N.hg38 C3N-02262 CCRCC WGS blood_normal CPT0188170002 4b1e0be9-79d2-48bd-bb97-e8539f79c106_wgs_gdc_realn.bam 84665084675 BAM harmonized CPTAC3 b5e3c796-78ce-473f-80ec-55314ba17b06 3c078a95086073eb2be6ca74af6bd3b9 { 'aliquot_tag': 'ALQ_78c470c5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02262.WGS.T C3N-02262 CCRCC WGS tumor CPT0188140011 CPT0188140011.WholeGenome.RP-1303.bam 54859323733 BAM aligned CPTAC3 17e55631-3b41-41b6-93cd-c8ec2f265dea f28cf396eedfece3d8a5e64b5d1596fa { 'aliquot_tag': 'ALQ_bf766aee', 'gdc_sample_type': 'Primary Tumor' } @@ -30249,16 +32345,16 @@ C3N-02263.miRNA-Seq.A C3N-02263 CCRCC miRNA-Seq tissue_normal CPT0188810009 1902 C3N-02263.miRNA-Seq.A.hg38 C3N-02263 CCRCC miRNA-Seq tissue_normal CPT0188810009 e17ab331-5a79-461a-9719-f34e590c0fd3_mirnaseq_gdc_realn.bam 212509525 BAM harmonized CPTAC3 ef4922f8-696c-419b-a7ce-9b7bdfd239d9 529e132eeca1c07e6a474bdef97dc3d1 { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02263.miRNA-Seq.T C3N-02263 CCRCC miRNA-Seq tumor CPT0188180009 190130_UNC31-K00269_0188_BH2FGCBBXY_CACTCA_S23_L005_R1_001.unaln.bam 222888114 BAM unaligned CPTAC3 bc25cd24-09ed-4923-98d9-be60b04ab18f 5de82006ed20f2c8bee4459dde1d438e { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor' } C3N-02263.miRNA-Seq.T.hg38 C3N-02263 CCRCC miRNA-Seq tumor CPT0188180009 9878c9ca-a917-4a84-8fca-34558c18510a_mirnaseq_gdc_realn.bam 244577516 BAM harmonized CPTAC3 45314e17-cdd1-4124-8bfb-db04bcaadb42 3271f0ad20ab17ca024fe15e061fb8ac { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02263.RNA-Seq.chimeric.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 1177b890-b059-4792-a916-af729a102e4b.rna_seq.chimeric.gdc_realn.bam 114306782 BAM chimeric harmonized CPTAC3 e45a949d-cd43-4941-8149-59273c6db1c1 08a0a570f31cb50079f33eb45d681545 { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02263.RNA-Seq.chimeric.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 07556b0b-b379-4c65-a525-653a9f72e40d.rna_seq.chimeric.gdc_realn.bam 34530668 BAM chimeric harmonized CPTAC3 ada757d0-6fa1-488c-91a9-1d96179c3493 93e30fc2923a44b5f30c5636674fd7b9 { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02263.RNA-Seq.genomic.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 1177b890-b059-4792-a916-af729a102e4b.rna_seq.genomic.gdc_realn.bam 9236211304 BAM genomic harmonized CPTAC3 cffc2b85-1968-4e84-ae2b-b988ef8ac4a1 6266d03d5ad4b0e5ca881638d02b2834 { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02263.RNA-Seq.genomic.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 07556b0b-b379-4c65-a525-653a9f72e40d.rna_seq.genomic.gdc_realn.bam 6878395513 BAM genomic harmonized CPTAC3 eee26d7f-dcd1-4480-8304-7072c19593a7 6937d363101358c4a8ffdd37a74abd70 { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02263.RNA-Seq.R1_L001.A C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTGAAA_S4_L001_R1_001.fastq.gz 4198386442 FASTQ R1_L001 unaligned CPTAC3 3756ce64-3671-44a0-9521-5b6fb373bd1a 5ff89d5412ed9ba89d6fbfc36db4e5ce { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02263.RNA-Seq.R1_L006.T C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 3302388212 FASTQ R1_L006 unaligned CPTAC3 fc0b8a08-6cb6-458a-9e2e-85588c256f8c c9592492e364b7ae4525d1a8ff9c098e { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02263.RNA-Seq.R2_L001.A C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTGAAA_S4_L001_R2_001.fastq.gz 4337643022 FASTQ R2_L001 unaligned CPTAC3 311f06c2-9d4b-4d9d-b914-66108d4118f1 3dfdc73d493c8d95c1424eddebf651a5 { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02263.RNA-Seq.R2_L006.T C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 3536214219 FASTQ R2_L006 unaligned CPTAC3 f2bad5e0-e9bb-42ab-bfec-ab8b04efd56f e792c803acb2433cb424e8ccdbb10497 { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02263.RNA-Seq.transcriptome.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 1177b890-b059-4792-a916-af729a102e4b.rna_seq.transcriptome.gdc_realn.bam 8429143747 BAM transcriptome harmonized CPTAC3 5eb23e9f-19e7-4bc4-8d21-7a7c8760cb35 f520d1bf9580329ccabceaa322e0c31c { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02263.RNA-Seq.transcriptome.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 07556b0b-b379-4c65-a525-653a9f72e40d.rna_seq.transcriptome.gdc_realn.bam 8063139327 BAM transcriptome harmonized CPTAC3 452a378f-20ad-4004-b2d6-e625ef7275c8 f3a60b50f8df367813dffe671ac4eb79 { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02263.RNA-Seq.chimeric.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 eeed5d93-7845-4a99-a124-90be94cef2df.rna_seq.chimeric.gdc_realn.bam 114289125 BAM chimeric harmonized CPTAC3 b51038ea-5721-4583-a84a-e00939786095 e5b05e205f6e5c017d0cf95a8522b561 { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02263.RNA-Seq.chimeric.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 20f780cc-1548-4ff7-ad22-54ba71a7692d.rna_seq.chimeric.gdc_realn.bam 34508276 BAM chimeric harmonized CPTAC3 f3d3bd07-ac2d-44be-8c7c-82810811f404 e81d7a62ca0b4114642f28dbeccdf835 { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02263.RNA-Seq.genomic.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 eeed5d93-7845-4a99-a124-90be94cef2df.rna_seq.genomic.gdc_realn.bam 9237415494 BAM genomic harmonized CPTAC3 24d8c628-2045-4b97-873e-7954377900a5 09f6c815904e8e93f2852b3809de9681 { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02263.RNA-Seq.genomic.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 20f780cc-1548-4ff7-ad22-54ba71a7692d.rna_seq.genomic.gdc_realn.bam 6879379309 BAM genomic harmonized CPTAC3 ae9faef0-97bc-433c-8f9d-3b026ba6b927 31056f5559d07a6846dce813ded77d80 { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02263.RNA-Seq.R1_L001.A C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTGAAA_S4_L001_R1_001.fastq.gz 4198386442 FASTQ R1_L001 unaligned CPTAC3 3756ce64-3671-44a0-9521-5b6fb373bd1a 5ff89d5412ed9ba89d6fbfc36db4e5ce { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-02263.RNA-Seq.R1_L006.T C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 3302388212 FASTQ R1_L006 unaligned CPTAC3 fc0b8a08-6cb6-458a-9e2e-85588c256f8c c9592492e364b7ae4525d1a8ff9c098e { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02263.RNA-Seq.R2_L001.A C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 190320_UNC31-K00269_0200_BH5CF5BBXY_GTGAAA_S4_L001_R2_001.fastq.gz 4337643022 FASTQ R2_L001 unaligned CPTAC3 311f06c2-9d4b-4d9d-b914-66108d4118f1 3dfdc73d493c8d95c1424eddebf651a5 { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-02263.RNA-Seq.R2_L006.T C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 190123_UNC31-K00269_0183_BH3L7LBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 3536214219 FASTQ R2_L006 unaligned CPTAC3 f2bad5e0-e9bb-42ab-bfec-ab8b04efd56f e792c803acb2433cb424e8ccdbb10497 { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02263.RNA-Seq.transcriptome.A.hg38 C3N-02263 CCRCC RNA-Seq tissue_normal CPT0188810009 eeed5d93-7845-4a99-a124-90be94cef2df.rna_seq.transcriptome.gdc_realn.bam 9596779878 BAM transcriptome harmonized CPTAC3 0accd542-8561-46e6-bdff-5e65438d1a0b 4696ea9d43aed3019ae3e72b4c178e49 { 'aliquot_tag': 'ALQ_47590d25', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02263.RNA-Seq.transcriptome.T.hg38 C3N-02263 CCRCC RNA-Seq tumor CPT0188180009 20f780cc-1548-4ff7-ad22-54ba71a7692d.rna_seq.transcriptome.gdc_realn.bam 9215618072 BAM transcriptome harmonized CPTAC3 da3ecd54-4f39-4ca7-8836-2a428f54e9f6 c8d803ca8f88b34760a4d4943c31680f { 'aliquot_tag': 'ALQ_6d463e9c', 'gdc_sample_type': 'Primary Tumor' } C3N-02263.WGS.N C3N-02263 CCRCC WGS blood_normal CPT0188840002 CPT0188840002.WholeGenome.RP-1303.bam 61869406783 BAM aligned CPTAC3 41d362bd-e6bc-47b8-a6d0-797f7800596d e19582d99ac5104efb2e1da6d1a30ad8 { 'aliquot_tag': 'ALQ_186b5bdd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02263.WGS.N.hg38 C3N-02263 CCRCC WGS blood_normal CPT0188840002 ae9709b4-e76f-46e6-a19e-b026f678d141_wgs_gdc_realn.bam 90978485038 BAM harmonized CPTAC3 c14b8d75-6020-4939-bb47-d2a719366d87 5319d1fbc2790439e2b634805fd5406f { 'aliquot_tag': 'ALQ_186b5bdd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02263.WGS.T C3N-02263 CCRCC WGS tumor CPT0188180006 CPT0188180006.WholeGenome.RP-1303.bam 58951215721 BAM aligned CPTAC3 0ca56eec-0aac-46e1-9542-fe186cd002ba 18d63f5f91afe2988597a2036662ae5b { 'aliquot_tag': 'ALQ_fdf9230d', 'gdc_sample_type': 'Primary Tumor' } @@ -30273,11 +32369,11 @@ C3N-02264.MethArray.Green.T C3N-02264 CCRCC Methylation Array tumor CPT018885000 C3N-02264.MethArray.Red.T C3N-02264 CCRCC Methylation Array tumor CPT0188850006 203220070100_R07C01_Red.idat 13676226 IDAT Red NA CPTAC3 dad23d5d-b483-455d-a6c4-6e645d0f2fa1 3a11aa0a7214fca159578f6ce2f4c3b0 { 'aliquot_tag': 'ALQ_2266b674', 'gdc_sample_type': 'Primary Tumor' } C3N-02264.miRNA-Seq.T C3N-02264 CCRCC miRNA-Seq tumor CPT0188850009 190130_UNC31-K00269_0188_BH2FGCBBXY_CAGGCG_S34_L005_R1_001.unaln.bam 172412234 BAM unaligned CPTAC3 557bebc5-6df9-48d7-a4ad-eba8b7ea2fa3 b171d57fe090f670e1667b17053aadd8 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor' } C3N-02264.miRNA-Seq.T.hg38 C3N-02264 CCRCC miRNA-Seq tumor CPT0188850009 dfa0a515-1f66-4e82-9467-e7a0ae787ecc_mirnaseq_gdc_realn.bam 193201550 BAM harmonized CPTAC3 2e1064c1-c6be-4aa8-9b86-2a5a2dbeb473 7b1b6bedbdf98471efcb57ddcb3dd4e8 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02264.RNA-Seq.chimeric.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 73c64f72-7112-4332-aed6-7bc2e7738b3a.rna_seq.chimeric.gdc_realn.bam 29735182 BAM chimeric harmonized CPTAC3 e6d77298-3f0b-483b-894b-53ccb81a01cb 49d6f2302a8c29f5f718d5a1d6a3e650 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02264.RNA-Seq.genomic.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 73c64f72-7112-4332-aed6-7bc2e7738b3a.rna_seq.genomic.gdc_realn.bam 6538639611 BAM genomic harmonized CPTAC3 59b91222-b483-4194-96ff-18495fcd02b4 dba0efbd3d839c6ffb739eb198e0a176 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02264.RNA-Seq.R1_L007.T C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L007_R1_001.fastq.gz 2914547264 FASTQ R1_L007 unaligned CPTAC3 3fc70ab6-da5a-4d27-8aa1-e3cdf7829d70 3c62dfc725870db2075449a2252c6f41 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02264.RNA-Seq.R2_L007.T C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L007_R2_001.fastq.gz 3100480885 FASTQ R2_L007 unaligned CPTAC3 38c8d9d6-d958-4753-af11-080eb31b45f9 3ffd3c2d1c59b312fab34cf7c1764597 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02264.RNA-Seq.transcriptome.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 73c64f72-7112-4332-aed6-7bc2e7738b3a.rna_seq.transcriptome.gdc_realn.bam 7380363628 BAM transcriptome harmonized CPTAC3 7d82c0b6-de26-40d4-b400-ac9112c019bb 391a2b1f2ac768194196412d843f2a2a { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02264.RNA-Seq.chimeric.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 81e31e13-0d4b-47af-913e-826f2f925ecf.rna_seq.chimeric.gdc_realn.bam 29722745 BAM chimeric harmonized CPTAC3 82bb73c1-e3fe-45f5-859f-b1d8085e11a7 884c816e409da63b43857253facd8ad0 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02264.RNA-Seq.genomic.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 81e31e13-0d4b-47af-913e-826f2f925ecf.rna_seq.genomic.gdc_realn.bam 6540321472 BAM genomic harmonized CPTAC3 359d42b6-7e7a-41ae-9fb4-793483bd09b8 5e96ecbc94194b5ab5993b4b7062d6f8 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02264.RNA-Seq.R1_L007.T C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L007_R1_001.fastq.gz 2914547264 FASTQ R1_L007 unaligned CPTAC3 3fc70ab6-da5a-4d27-8aa1-e3cdf7829d70 3c62dfc725870db2075449a2252c6f41 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02264.RNA-Seq.R2_L007.T C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 190123_UNC31-K00269_0183_BH3L7LBBXY_GATCAG_S3_L007_R2_001.fastq.gz 3100480885 FASTQ R2_L007 unaligned CPTAC3 38c8d9d6-d958-4753-af11-080eb31b45f9 3ffd3c2d1c59b312fab34cf7c1764597 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02264.RNA-Seq.transcriptome.T.hg38 C3N-02264 CCRCC RNA-Seq tumor CPT0188850009 81e31e13-0d4b-47af-913e-826f2f925ecf.rna_seq.transcriptome.gdc_realn.bam 8290093801 BAM transcriptome harmonized CPTAC3 51cb1b28-746e-4fc7-9ec0-d2318d58918f f4f5b2064e6ee2cc618c95bf64207458 { 'aliquot_tag': 'ALQ_b2d9abe5', 'gdc_sample_type': 'Primary Tumor' } C3N-02264.WGS.N C3N-02264 CCRCC WGS blood_normal CPT0188890002 CPT0188890002.WholeGenome.RP-1303.bam 55335709349 BAM aligned CPTAC3 279ab7f4-6c5c-4548-8d43-09d4a3cb494e f9195f9a9d36f69ce5d8330137474532 { 'aliquot_tag': 'ALQ_e0fb9f6c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02264.WGS.N.hg38 C3N-02264 CCRCC WGS blood_normal CPT0188890002 3ef639b1-6ede-4f5d-9a2b-a461409cb1c4_wgs_gdc_realn.bam 81412544331 BAM harmonized CPTAC3 4b245348-5cf9-4351-a136-3b65a8641f6c d9b7d814d5594005f478f4e7604083ba { 'aliquot_tag': 'ALQ_e0fb9f6c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02264.WGS.T C3N-02264 CCRCC WGS tumor CPT0188850006 CPT0188850006.WholeGenome.RP-1303.bam 119787345990 BAM aligned CPTAC3 0f8509e7-da00-4888-98e2-383d3122dbb6 cf9cdcfb6d7d4a413fc50948006aee3e { 'aliquot_tag': 'ALQ_2266b674', 'gdc_sample_type': 'Primary Tumor' } @@ -30294,16 +32390,16 @@ C3N-02265.miRNA-Seq.A C3N-02265 CCRCC miRNA-Seq tissue_normal CPT0188910006 1902 C3N-02265.miRNA-Seq.A.hg38 C3N-02265 CCRCC miRNA-Seq tissue_normal CPT0188910006 9a50f027-5e54-4ec9-b372-6246419ef1b5_mirnaseq_gdc_realn.bam 189271401 BAM harmonized CPTAC3 08766175-0c34-4225-8b98-b3f7054a44b3 37f52bb677addfa6a2978690e3819536 { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02265.miRNA-Seq.T C3N-02265 CCRCC miRNA-Seq tumor CPT0188900009 190130_UNC31-K00269_0188_BH2FGCBBXY_CATGGC_S24_L005_R1_001.unaln.bam 182542044 BAM unaligned CPTAC3 1bb9a3aa-95b4-4ebe-bf58-06d6c9c72cef bc2bc0bd90518788d294ab8d39231367 { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor' } C3N-02265.miRNA-Seq.T.hg38 C3N-02265 CCRCC miRNA-Seq tumor CPT0188900009 a6e66daa-f52f-4a46-abb9-675bb0fa057d_mirnaseq_gdc_realn.bam 201456997 BAM harmonized CPTAC3 8a3fbc37-84fb-4218-9781-bd27d83987de cece5f8e7af4b8b4cc987bcb3bf99085 { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor' } -C3N-02265.RNA-Seq.chimeric.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 f9424e87-f171-4cab-92ad-1df70931b98d.rna_seq.chimeric.gdc_realn.bam 53406880 BAM chimeric harmonized CPTAC3 7b07e34e-35aa-48a9-bab7-3bca90f99f57 4073de51113ab9c2e7fafc97a2e3df1d { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02265.RNA-Seq.chimeric.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 ee60e66f-4225-41ef-9157-018dd4ae79cd.rna_seq.chimeric.gdc_realn.bam 47745286 BAM chimeric harmonized CPTAC3 7dea6ddb-0ab0-436c-9ed4-70b7184c3113 1d46b27df2833a2f0fcff75c1b5ead6d { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor' } -C3N-02265.RNA-Seq.genomic.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 f9424e87-f171-4cab-92ad-1df70931b98d.rna_seq.genomic.gdc_realn.bam 7596419390 BAM genomic harmonized CPTAC3 f7c0fa2c-ca59-49ab-856b-b87839642525 efb37c3b386dec00348a6a7076607eb9 { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02265.RNA-Seq.genomic.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 ee60e66f-4225-41ef-9157-018dd4ae79cd.rna_seq.genomic.gdc_realn.bam 10416504378 BAM genomic harmonized CPTAC3 7a9cc6f0-ffcb-431a-b8b6-76aea5151123 352ed46f6e8488074f3474772dfe37de { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor' } -C3N-02265.RNA-Seq.R1_L004.A C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACAGTG_S15_L004_R1_001.fastq.gz 3442718189 FASTQ R1_L004 unaligned CPTAC3 473686e3-9e58-4ad7-bd58-24861cb08a95 41eb0107334da9dc81a72dfce6a2445c { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02265.RNA-Seq.R1_L007.T C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L007_R1_001.fastq.gz 5092665356 FASTQ R1_L007 unaligned CPTAC3 8bb415e9-7eae-433f-9559-4ac9d7b7e5c5 af798c7d1281d6cd87b964ac4ebeeb08 { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor' } -C3N-02265.RNA-Seq.R2_L004.A C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACAGTG_S15_L004_R2_001.fastq.gz 3806720586 FASTQ R2_L004 unaligned CPTAC3 c417302d-9f31-4691-adce-8a6e72606cc4 2f0ed449abe1f87f42d3850ae793fd2e { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02265.RNA-Seq.R2_L007.T C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L007_R2_001.fastq.gz 5390866218 FASTQ R2_L007 unaligned CPTAC3 3ed06e16-0850-4521-977d-11412be032c3 c3205dafafb9ad3c47ae843bad90d426 { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor' } -C3N-02265.RNA-Seq.transcriptome.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 f9424e87-f171-4cab-92ad-1df70931b98d.rna_seq.transcriptome.gdc_realn.bam 7358728422 BAM transcriptome harmonized CPTAC3 7168c9b9-9ac7-4678-a3e1-13391a2a2ed6 57d82b1ab1d5c99ad7073a09d38bba6b { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02265.RNA-Seq.transcriptome.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 ee60e66f-4225-41ef-9157-018dd4ae79cd.rna_seq.transcriptome.gdc_realn.bam 11989635313 BAM transcriptome harmonized CPTAC3 a9e62431-8e87-4343-8dd6-7403d44931e0 a7b72d28c151e54ccec53ee85f679187 { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor' } +C3N-02265.RNA-Seq.chimeric.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 0bc23a04-e73f-44ef-ad03-a84343d1d858.rna_seq.chimeric.gdc_realn.bam 53376536 BAM chimeric harmonized CPTAC3 7bd1e49b-dda3-4ec9-a69c-fe00c92ffef0 7a86171ffb7f3641d8a1bf3f7a32416e { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02265.RNA-Seq.chimeric.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 d7f49e06-ab80-4b72-b544-79d55f88f677.rna_seq.chimeric.gdc_realn.bam 47739758 BAM chimeric harmonized CPTAC3 b3222eed-336d-401a-9267-b80e9d16da2a 8f056f0eb8f921407a0c69e4ebfd925a { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor' } +C3N-02265.RNA-Seq.genomic.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 0bc23a04-e73f-44ef-ad03-a84343d1d858.rna_seq.genomic.gdc_realn.bam 7597041692 BAM genomic harmonized CPTAC3 64e016e8-c611-4b3a-bd19-4575d4d86f77 b1b1c0535577abbf77bbbe3c354f7512 { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02265.RNA-Seq.genomic.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 d7f49e06-ab80-4b72-b544-79d55f88f677.rna_seq.genomic.gdc_realn.bam 10418031407 BAM genomic harmonized CPTAC3 dd7b772f-efd7-43a5-b2cc-18c354b5e952 bbbd74fe891c2692e222efde1860d1c4 { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor' } +C3N-02265.RNA-Seq.R1_L004.A C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACAGTG_S15_L004_R1_001.fastq.gz 3442718189 FASTQ R1_L004 unaligned CPTAC3 473686e3-9e58-4ad7-bd58-24861cb08a95 41eb0107334da9dc81a72dfce6a2445c { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02265.RNA-Seq.R1_L007.T C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L007_R1_001.fastq.gz 5092665356 FASTQ R1_L007 unaligned CPTAC3 8bb415e9-7eae-433f-9559-4ac9d7b7e5c5 af798c7d1281d6cd87b964ac4ebeeb08 { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02265.RNA-Seq.R2_L004.A C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACAGTG_S15_L004_R2_001.fastq.gz 3806720586 FASTQ R2_L004 unaligned CPTAC3 c417302d-9f31-4691-adce-8a6e72606cc4 2f0ed449abe1f87f42d3850ae793fd2e { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02265.RNA-Seq.R2_L007.T C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 190123_UNC31-K00269_0183_BH3L7LBBXY_TAGCTT_S2_L007_R2_001.fastq.gz 5390866218 FASTQ R2_L007 unaligned CPTAC3 3ed06e16-0850-4521-977d-11412be032c3 c3205dafafb9ad3c47ae843bad90d426 { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02265.RNA-Seq.transcriptome.A.hg38 C3N-02265 CCRCC RNA-Seq tissue_normal CPT0188910006 0bc23a04-e73f-44ef-ad03-a84343d1d858.rna_seq.transcriptome.gdc_realn.bam 8415930009 BAM transcriptome harmonized CPTAC3 18289c4c-01c6-4928-b8d8-8ade2d079aca a59d6e97331ee989fe05c5392c4b8677 { 'aliquot_tag': 'ALQ_1cbac311', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02265.RNA-Seq.transcriptome.T.hg38 C3N-02265 CCRCC RNA-Seq tumor CPT0188900009 d7f49e06-ab80-4b72-b544-79d55f88f677.rna_seq.transcriptome.gdc_realn.bam 13608146017 BAM transcriptome harmonized CPTAC3 25bb9810-ba09-4ce9-9a66-6b18d2134027 26cbbc101b22f3d20c613134a728b65e { 'aliquot_tag': 'ALQ_b165f730', 'gdc_sample_type': 'Primary Tumor' } C3N-02265.WGS.N C3N-02265 CCRCC WGS blood_normal CPT0188940002 CPT0188940002.WholeGenome.RP-1303.bam 104776168397 BAM aligned CPTAC3 d961c3a9-a812-4115-999a-0b82ac6731a6 01deb20ffdcf1ee3f2023a3555aedcc9 { 'aliquot_tag': 'ALQ_d3378878', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02265.WGS.N.hg38 C3N-02265 CCRCC WGS blood_normal CPT0188940002 40f13e63-757b-43af-a946-8e2bdab7163d_wgs_gdc_realn.bam 151479198582 BAM harmonized CPTAC3 140f3f69-4cdb-4705-9e70-86fe2efc1420 f5fcebae06f175df7affcb101a59375f { 'aliquot_tag': 'ALQ_d3378878', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02265.WGS.T C3N-02265 CCRCC WGS tumor CPT0188900006 CPT0188900006.WholeGenome.RP-1303.bam 125237552249 BAM aligned CPTAC3 f0782c34-97b6-4d07-bf94-b8f8bfc06b1f ae2d7b61c2f45603d45306309d69173c { 'aliquot_tag': 'ALQ_21daeaa1', 'gdc_sample_type': 'Primary Tumor' } @@ -30318,11 +32414,11 @@ C3N-02266.MethArray.Green.T C3N-02266 CCRCC Methylation Array tumor CPT018895000 C3N-02266.MethArray.Red.T C3N-02266 CCRCC Methylation Array tumor CPT0188950006 203219650218_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 ca12c0d2-c3a8-4cfa-9e36-527e5cc9d3ee 51a311f180db82f022728534bee4610a { 'aliquot_tag': 'ALQ_e93a65d1', 'gdc_sample_type': 'Primary Tumor' } C3N-02266.miRNA-Seq.T C3N-02266 CCRCC miRNA-Seq tumor CPT0188950009 190130_UNC31-K00269_0188_BH2FGCBBXY_CATTTT_S35_L005_R1_001.unaln.bam 228513270 BAM unaligned CPTAC3 98422dff-172c-4b4d-b5a9-fe6f3cd455ed ff5e42a1175d6ed12533b5fca9a194df { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor' } C3N-02266.miRNA-Seq.T.hg38 C3N-02266 CCRCC miRNA-Seq tumor CPT0188950009 05a6e966-f900-4977-968a-a46a1fa25446_mirnaseq_gdc_realn.bam 259259934 BAM harmonized CPTAC3 557d80ee-6f16-424f-90a2-304d75709462 b97aba291835bc09a6d982d29c7e0d9c { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor' } -C3N-02266.RNA-Seq.chimeric.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 4800cb63-c403-490b-a653-733c78c47699.rna_seq.chimeric.gdc_realn.bam 41512564 BAM chimeric harmonized CPTAC3 a0bb317f-2ac8-41ca-861c-77c210f4b032 a14333ea966631b5c46d73babae90b65 { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor' } -C3N-02266.RNA-Seq.genomic.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 4800cb63-c403-490b-a653-733c78c47699.rna_seq.genomic.gdc_realn.bam 9970247671 BAM genomic harmonized CPTAC3 e37f9c91-c724-4e99-b4de-26b079a72259 64f59fa3514dfcd90eebdab1a14863f1 { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor' } -C3N-02266.RNA-Seq.R1_L007.T C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L007_R1_001.fastq.gz 4610916562 FASTQ R1_L007 unaligned CPTAC3 29c048f0-71fb-467e-8040-b06b12f03ce5 7d0c0d5b44d0c454d45ccc82361955f8 { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor' } -C3N-02266.RNA-Seq.R2_L007.T C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L007_R2_001.fastq.gz 5111306517 FASTQ R2_L007 unaligned CPTAC3 9415c7d5-4fb8-499b-b03f-e3dcd5ec25e4 88f5a6df0db04349afc55348274a2b92 { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor' } -C3N-02266.RNA-Seq.transcriptome.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 4800cb63-c403-490b-a653-733c78c47699.rna_seq.transcriptome.gdc_realn.bam 10830462149 BAM transcriptome harmonized CPTAC3 085b15ef-c199-4f68-8048-aeb53b0cdedc 5871eff7563037f5a3b2588dc2202492 { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor' } +C3N-02266.RNA-Seq.chimeric.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 cfd94e8c-6a58-4d0a-879c-4d41414f4bea.rna_seq.chimeric.gdc_realn.bam 41515638 BAM chimeric harmonized CPTAC3 7cff4843-a65d-4355-8bdf-17b2f16c8c1c 454abe116c216ce53443c0ad20cd2776 { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor' } +C3N-02266.RNA-Seq.genomic.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 cfd94e8c-6a58-4d0a-879c-4d41414f4bea.rna_seq.genomic.gdc_realn.bam 9971371408 BAM genomic harmonized CPTAC3 881eb0d2-5731-4ba6-8dd1-361739b0e7eb 62253f1b9868699eeb39c37c242c0011 { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor' } +C3N-02266.RNA-Seq.R1_L007.T C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L007_R1_001.fastq.gz 4610916562 FASTQ R1_L007 unaligned CPTAC3 29c048f0-71fb-467e-8040-b06b12f03ce5 7d0c0d5b44d0c454d45ccc82361955f8 { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02266.RNA-Seq.R2_L007.T C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 190123_UNC31-K00269_0183_BH3L7LBBXY_GGCTAC_S1_L007_R2_001.fastq.gz 5111306517 FASTQ R2_L007 unaligned CPTAC3 9415c7d5-4fb8-499b-b03f-e3dcd5ec25e4 88f5a6df0db04349afc55348274a2b92 { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02266.RNA-Seq.transcriptome.T.hg38 C3N-02266 CCRCC RNA-Seq tumor CPT0188950009 cfd94e8c-6a58-4d0a-879c-4d41414f4bea.rna_seq.transcriptome.gdc_realn.bam 12262099065 BAM transcriptome harmonized CPTAC3 f8feea90-3a71-4966-be7e-6d8412db405f a3823345fac1952cab7f0f7c27e4b6da { 'aliquot_tag': 'ALQ_79857840', 'gdc_sample_type': 'Primary Tumor' } C3N-02266.WGS.N C3N-02266 CCRCC WGS blood_normal CPT0188970002 CPT0188970002.WholeGenome.RP-1303.bam 114399327135 BAM aligned CPTAC3 e922214d-6045-49e1-9494-79aa1db485db d98eab735d7127225c26e180ebefe99e { 'aliquot_tag': 'ALQ_9497f2a8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02266.WGS.N.hg38 C3N-02266 CCRCC WGS blood_normal CPT0188970002 66471fe4-e446-4c79-a8fe-283047c13b5a_wgs_gdc_realn.bam 166254112111 BAM harmonized CPTAC3 620a4374-783c-474b-9cb0-383011cdaebb aa79168889c097a233761e51337c4610 { 'aliquot_tag': 'ALQ_9497f2a8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02266.WGS.T C3N-02266 CCRCC WGS tumor CPT0188950006 CPT0188950006.WholeGenome.RP-1303.bam 112154524414 BAM aligned CPTAC3 51ad6ea0-fd91-45d5-935e-ccff98fe1e67 4ac58a4f33f9ffc3c47c7c6329b46f2d { 'aliquot_tag': 'ALQ_e93a65d1', 'gdc_sample_type': 'Primary Tumor' } @@ -30335,13 +32431,16 @@ C3N-02271.MethArray.Green.T C3N-02271 UCEC Methylation Array tumor CPT0181670011 C3N-02271.MethArray.Red.T C3N-02271 UCEC Methylation Array tumor CPT0181670011 203561450073_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 2baf4c42-6876-4aac-ab8a-206980f61fe2 521e6dc2546623e8c296995c1174dd83 { 'aliquot_tag': 'ALQ_704b6555', 'gdc_sample_type': 'Primary Tumor' } C3N-02271.miRNA-Seq.T C3N-02271 UCEC miRNA-Seq tumor CPT0181670014 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTTGA_S8_L003_R1_001.unaln.bam 198650312 BAM unaligned CPTAC3 65f39fa3-a13c-4621-8c2c-d5875f83873c 56794a0cc9d68ee326e6ce4343e6c5e4 { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor' } C3N-02271.miRNA-Seq.T.hg38 C3N-02271 UCEC miRNA-Seq tumor CPT0181670014 74a1a56f-2fc1-4b68-bce0-e20f7068d906_mirnaseq_gdc_realn.bam 224584540 BAM harmonized CPTAC3 13e3debd-1565-41f2-9be6-78b90ab64f79 5a01929529c9fa59711f581d919e14cf { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor' } -C3N-02271.RNA-Seq.chimeric.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 66f7136a-7e86-494d-a7a9-f0a5f825fc0e.rna_seq.chimeric.gdc_realn.bam 47142650 BAM chimeric harmonized CPTAC3 e0abf899-94ec-454f-82e4-d7192605f5fb 458c0c91e13c714709c133bb342637db { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor' } -C3N-02271.RNA-Seq.genomic.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 66f7136a-7e86-494d-a7a9-f0a5f825fc0e.rna_seq.genomic.gdc_realn.bam 8661281156 BAM genomic harmonized CPTAC3 7e2d8298-a0d6-4e3a-bea6-26e857c3b984 c6ced54bffa75df5caa6428134abfa4a { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor' } -C3N-02271.RNA-Seq.R1_L001.T C3N-02271 UCEC RNA-Seq tumor CPT0181670014 190604_UNC32-K00270_0177_AH7F5VBBXY_GAATGAGA-GAGGCATT_S4_L001_R1_001.fastq.gz 4113611353 FASTQ R1_L001 unaligned CPTAC3 a94239b3-71d6-48b0-9f2d-02967507f364 5afd2dc44f31dc1b4616a9caffdd9856 { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor' } -C3N-02271.RNA-Seq.R1_.T C3N-02271 UCEC RNA-Seq tumor CPT0352440001 20210723_P2_C11_WB7988-plate2_S35_R1_001.fastq.gz 6584273526 FASTQ R1_ unaligned CPTAC3 447ba7bf-e183-4b30-896c-815f9d460e20 3ba1e02f9344a5ddaf226d28c6bb6ea9 { 'aliquot_tag': 'ALQ_e723a805', 'gdc_sample_type': 'Primary Tumor' } -C3N-02271.RNA-Seq.R2_L001.T C3N-02271 UCEC RNA-Seq tumor CPT0181670014 190604_UNC32-K00270_0177_AH7F5VBBXY_GAATGAGA-GAGGCATT_S4_L001_R2_001.fastq.gz 4662404266 FASTQ R2_L001 unaligned CPTAC3 eccadfbc-6f7d-497c-a679-c31a2abad9ea 7e1df27bf3a61a0a2fd95b69748ef581 { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor' } -C3N-02271.RNA-Seq.R2_.T C3N-02271 UCEC RNA-Seq tumor CPT0352440001 20210723_P2_C11_WB7988-plate2_S35_R2_001.fastq.gz 6694531573 FASTQ R2_ unaligned CPTAC3 65e2a265-2479-4bb9-8f70-e5308edc77ae 72ec457c29c10475c35e26790906f7da { 'aliquot_tag': 'ALQ_e723a805', 'gdc_sample_type': 'Primary Tumor' } -C3N-02271.RNA-Seq.transcriptome.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 66f7136a-7e86-494d-a7a9-f0a5f825fc0e.rna_seq.transcriptome.gdc_realn.bam 8840771859 BAM transcriptome harmonized CPTAC3 107a7db0-3c5b-4572-84f4-194d2aa5b36b 6c53a337ee1c8a821640ad16393d263b { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor' } +C3N-02271.RNA-Seq.chimeric.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 22b14648-caeb-43c9-914c-cd59e1af6876.rna_seq.chimeric.gdc_realn.bam 47133024 BAM chimeric harmonized CPTAC3 95796dfa-4a32-467d-a965-1391919f626d 61236fa621111face1531a3dcf9ff6f2 { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor' } +C3N-02271.RNA-Seq.chimeric.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0352440001 97c52c3d-dbea-44da-a503-f56e727f00de.rna_seq.chimeric.gdc_realn.bam 236413547 BAM chimeric harmonized CPTAC3 3bec1f19-acf3-4d74-914d-dc1240393684 fd678922b130a7826e5b0ddb36713050 { 'aliquot_tag': 'ALQ_e723a805', 'gdc_sample_type': 'Primary Tumor' } +C3N-02271.RNA-Seq.genomic.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 22b14648-caeb-43c9-914c-cd59e1af6876.rna_seq.genomic.gdc_realn.bam 8662076070 BAM genomic harmonized CPTAC3 c69d467d-e44a-4f77-918a-6dd750b98a8f 254940344e9a3fd965edc3c3a313d71e { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor' } +C3N-02271.RNA-Seq.genomic.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0352440001 97c52c3d-dbea-44da-a503-f56e727f00de.rna_seq.genomic.gdc_realn.bam 11711728967 BAM genomic harmonized CPTAC3 c4c02e1f-e0c0-4836-af69-1f84db456866 6ab87c016f169fc4574c2c7d42929a1f { 'aliquot_tag': 'ALQ_e723a805', 'gdc_sample_type': 'Primary Tumor' } +C3N-02271.RNA-Seq.R1_L001.T C3N-02271 UCEC RNA-Seq tumor CPT0181670014 190604_UNC32-K00270_0177_AH7F5VBBXY_GAATGAGA-GAGGCATT_S4_L001_R1_001.fastq.gz 4113611353 FASTQ R1_L001 unaligned CPTAC3 a94239b3-71d6-48b0-9f2d-02967507f364 5afd2dc44f31dc1b4616a9caffdd9856 { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02271.RNA-Seq.R2_L001.T C3N-02271 UCEC RNA-Seq tumor CPT0181670014 190604_UNC32-K00270_0177_AH7F5VBBXY_GAATGAGA-GAGGCATT_S4_L001_R2_001.fastq.gz 4662404266 FASTQ R2_L001 unaligned CPTAC3 eccadfbc-6f7d-497c-a679-c31a2abad9ea 7e1df27bf3a61a0a2fd95b69748ef581 { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02271.RNA-Seq.T C3N-02271 UCEC RNA-Seq tumor CPT0352440001 20210723_P2_C11_WB7988-plate2_S35_R1_001.fastq.gz 6584273526 FASTQ unaligned CPTAC3 447ba7bf-e183-4b30-896c-815f9d460e20 3ba1e02f9344a5ddaf226d28c6bb6ea9 +C3N-02271.RNA-Seq.T C3N-02271 UCEC RNA-Seq tumor CPT0352440001 20210723_P2_C11_WB7988-plate2_S35_R2_001.fastq.gz 6694531573 FASTQ unaligned CPTAC3 65e2a265-2479-4bb9-8f70-e5308edc77ae 72ec457c29c10475c35e26790906f7da +C3N-02271.RNA-Seq.transcriptome.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0181670014 22b14648-caeb-43c9-914c-cd59e1af6876.rna_seq.transcriptome.gdc_realn.bam 10108492186 BAM transcriptome harmonized CPTAC3 1d020c52-112b-45c5-bfd1-209e0c965413 fd6605b2bb1634f2f97a0f773f802a88 { 'aliquot_tag': 'ALQ_2191da', 'gdc_sample_type': 'Primary Tumor' } +C3N-02271.RNA-Seq.transcriptome.T.hg38 C3N-02271 UCEC RNA-Seq tumor CPT0352440001 97c52c3d-dbea-44da-a503-f56e727f00de.rna_seq.transcriptome.gdc_realn.bam 5580019898 BAM transcriptome harmonized CPTAC3 10095a05-5fad-4ff0-8ba1-f4c6beddba7c b6ac50cc7e8518c9f0e4bb2839a313d7 { 'aliquot_tag': 'ALQ_e723a805', 'gdc_sample_type': 'Primary Tumor' } C3N-02271.WGS.N C3N-02271 UCEC WGS blood_normal CPT0181730002 CPT0181730002.WholeGenome.RP-1303.bam 78746740694 BAM aligned CPTAC3 2b1c3fc6-761d-40fe-9a92-151e7ec63630 9d3e6f800a724661845738e81535619d { 'aliquot_tag': 'ALQ_ce8570cb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02271.WGS.N.hg38 C3N-02271 UCEC WGS blood_normal CPT0181730002 d9b7c46a-b056-40a3-b6a9-5c3018dc1d26_wgs_gdc_realn.bam 115500352900 BAM harmonized CPTAC3 f646282e-40af-441c-8e90-aede75106ba8 bd64a05e50df1a7d02605669f88c6014 { 'aliquot_tag': 'ALQ_ce8570cb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02271.WGS.T C3N-02271 UCEC WGS tumor CPT0181670011 CPT0181670011.WholeGenome.RP-1303.bam 78699894579 BAM aligned CPTAC3 0d28d79f-e63c-40d7-b1a3-4c074e1b1253 a9cf8e24bcca6f1964d742cc04af4f1f { 'aliquot_tag': 'ALQ_704b6555', 'gdc_sample_type': 'Primary Tumor' } @@ -30354,13 +32453,16 @@ C3N-02274.MethArray.Green.T C3N-02274 UCEC Methylation Array tumor CPT0182380007 C3N-02274.MethArray.Red.T C3N-02274 UCEC Methylation Array tumor CPT0182380007 203561620049_R04C01_Red.idat 13676233 IDAT Red NA CPTAC3 2f817dd3-984e-400a-b5e5-1930092c58f9 bffafea51fc1c95e6082e259cb40e061 { 'aliquot_tag': 'ALQ_6346edde', 'gdc_sample_type': 'Primary Tumor' } C3N-02274.miRNA-Seq.T C3N-02274 UCEC miRNA-Seq tumor CPT0182380010 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGTCA_S15_L001_R1_001.unaln.bam 205883780 BAM unaligned CPTAC3 638228c7-80f9-41cb-8c8e-e169a975d820 4eec343aa08c9f460cc6131592f48ad2 { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor' } C3N-02274.miRNA-Seq.T.hg38 C3N-02274 UCEC miRNA-Seq tumor CPT0182380010 e69f931b-8776-4320-9a85-acf1ae139ec1_mirnaseq_gdc_realn.bam 238411768 BAM harmonized CPTAC3 47ba0a10-5388-4359-9beb-ccdbb05ae927 23d05fd93cf7ecf9c3f9adcf42609286 { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02274.RNA-Seq.chimeric.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 16ee12f4-e8da-42f8-83a7-9ff0fdbc1b96.rna_seq.chimeric.gdc_realn.bam 31776769 BAM chimeric harmonized CPTAC3 73dd8770-9207-4da0-8164-f2a83d793b4e f92258da575338a3954abff3ae843bd1 { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02274.RNA-Seq.genomic.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 16ee12f4-e8da-42f8-83a7-9ff0fdbc1b96.rna_seq.genomic.gdc_realn.bam 8362357016 BAM genomic harmonized CPTAC3 b02e019f-2c29-4ecb-b31d-5eac7126ee61 12a56f6d1055ac9602a4e4a8f6ad4b96 { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02274.RNA-Seq.R1_L005.T C3N-02274 UCEC RNA-Seq tumor CPT0182380010 190522_UNC31-K00269_0217_AH7F5MBBXY_GGCTTAAG-TCGTGACC_S33_L005_R1_001.fastq.gz 4082146412 FASTQ R1_L005 unaligned CPTAC3 5be907b3-28a4-48c7-9b52-b779badebd58 3bb81c69e58bfd8db8822074cf86c6ed { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02274.RNA-Seq.R1_.T C3N-02274 UCEC RNA-Seq tumor CPT0352470001 20210729_P3_C10_WB7988-Plate3_S34_R1_001.fastq.gz 4669979169 FASTQ R1_ unaligned CPTAC3 fa2a18f8-f6e5-434a-a47d-92595f328edb 6377ca1c5d3a534c2f3dfb621a411c89 { 'aliquot_tag': 'ALQ_a083d2d5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02274.RNA-Seq.R2_L005.T C3N-02274 UCEC RNA-Seq tumor CPT0182380010 190522_UNC31-K00269_0217_AH7F5MBBXY_GGCTTAAG-TCGTGACC_S33_L005_R2_001.fastq.gz 4594238747 FASTQ R2_L005 unaligned CPTAC3 0ab3da5d-77b9-4e92-9f76-6de8335f806c e352ab48dc933a7486ab6f95471e0aa9 { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02274.RNA-Seq.R2_.T C3N-02274 UCEC RNA-Seq tumor CPT0352470001 20210729_P3_C10_WB7988-Plate3_S34_R2_001.fastq.gz 4905232569 FASTQ R2_ unaligned CPTAC3 3c0a9850-ad52-4df8-8449-cbddde626e78 c8562e1f6a04856a19349211bdda6709 { 'aliquot_tag': 'ALQ_a083d2d5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02274.RNA-Seq.transcriptome.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 16ee12f4-e8da-42f8-83a7-9ff0fdbc1b96.rna_seq.transcriptome.gdc_realn.bam 10292315421 BAM transcriptome harmonized CPTAC3 977c60d3-88c9-4eee-8eb1-a6f8a6c38af4 4cdcdeb5f7791b3cc72c6f1dda54fecd { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02274.RNA-Seq.chimeric.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 f24c8559-a464-4516-9852-990e53673971.rna_seq.chimeric.gdc_realn.bam 31761564 BAM chimeric harmonized CPTAC3 29df9e07-ab41-45d2-87b6-502c6ceed1f5 6ac0ff06d4a59fdfd083d09ae7dbe558 { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02274.RNA-Seq.chimeric.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0352470001 170cbf07-2f9e-420e-ab3d-a0903bc400f4.rna_seq.chimeric.gdc_realn.bam 140402122 BAM chimeric harmonized CPTAC3 a8ed21fb-a693-4ea1-a5b6-6e2780117932 e922ed04614bb597e1e7559e141706a6 { 'aliquot_tag': 'ALQ_a083d2d5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02274.RNA-Seq.genomic.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 f24c8559-a464-4516-9852-990e53673971.rna_seq.genomic.gdc_realn.bam 8363175125 BAM genomic harmonized CPTAC3 31a26787-5a55-4458-ab80-327965103b92 2b5e1e92a6bcfe4a7a9f21f58a268bbf { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02274.RNA-Seq.genomic.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0352470001 170cbf07-2f9e-420e-ab3d-a0903bc400f4.rna_seq.genomic.gdc_realn.bam 7073013886 BAM genomic harmonized CPTAC3 369b9440-5342-4481-b21a-0753743ca707 1d1ddf50c9439dfabc031082c9b3312d { 'aliquot_tag': 'ALQ_a083d2d5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02274.RNA-Seq.R1_L005.T C3N-02274 UCEC RNA-Seq tumor CPT0182380010 190522_UNC31-K00269_0217_AH7F5MBBXY_GGCTTAAG-TCGTGACC_S33_L005_R1_001.fastq.gz 4082146412 FASTQ R1_L005 unaligned CPTAC3 5be907b3-28a4-48c7-9b52-b779badebd58 3bb81c69e58bfd8db8822074cf86c6ed { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02274.RNA-Seq.R2_L005.T C3N-02274 UCEC RNA-Seq tumor CPT0182380010 190522_UNC31-K00269_0217_AH7F5MBBXY_GGCTTAAG-TCGTGACC_S33_L005_R2_001.fastq.gz 4594238747 FASTQ R2_L005 unaligned CPTAC3 0ab3da5d-77b9-4e92-9f76-6de8335f806c e352ab48dc933a7486ab6f95471e0aa9 { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02274.RNA-Seq.T C3N-02274 UCEC RNA-Seq tumor CPT0352470001 20210729_P3_C10_WB7988-Plate3_S34_R1_001.fastq.gz 4669979169 FASTQ unaligned CPTAC3 fa2a18f8-f6e5-434a-a47d-92595f328edb 6377ca1c5d3a534c2f3dfb621a411c89 +C3N-02274.RNA-Seq.T C3N-02274 UCEC RNA-Seq tumor CPT0352470001 20210729_P3_C10_WB7988-Plate3_S34_R2_001.fastq.gz 4905232569 FASTQ unaligned CPTAC3 3c0a9850-ad52-4df8-8449-cbddde626e78 c8562e1f6a04856a19349211bdda6709 +C3N-02274.RNA-Seq.transcriptome.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0182380010 f24c8559-a464-4516-9852-990e53673971.rna_seq.transcriptome.gdc_realn.bam 11820614277 BAM transcriptome harmonized CPTAC3 6a0bc772-928b-4fb9-93ee-7112e22207f3 d1496164951c73c1d9e279992271737f { 'aliquot_tag': 'ALQ_e439493c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02274.RNA-Seq.transcriptome.T.hg38 C3N-02274 UCEC RNA-Seq tumor CPT0352470001 170cbf07-2f9e-420e-ab3d-a0903bc400f4.rna_seq.transcriptome.gdc_realn.bam 3607972004 BAM transcriptome harmonized CPTAC3 80a3e5aa-8b03-4c8b-b703-5a53888975fa e07c9b7d354a71c60b8fa647e4ab0884 { 'aliquot_tag': 'ALQ_a083d2d5', 'gdc_sample_type': 'Primary Tumor' } C3N-02274.WGS.N C3N-02274 UCEC WGS blood_normal CPT0182440002 CPT0182440002.WholeGenome.RP-1303.bam 63746783618 BAM aligned CPTAC3 216bb0b4-f3b2-46ad-b083-f859f84f99f2 de1c63c0dded340d9972b8c0fc3ad60f { 'aliquot_tag': 'ALQ_cbd9c4e8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02274.WGS.N.hg38 C3N-02274 UCEC WGS blood_normal CPT0182440002 c478da9b-c518-4ec9-be48-b5114cabc73e_wgs_gdc_realn.bam 94294832961 BAM harmonized CPTAC3 fdda9b8c-ca7c-4eec-b994-14e6506abfb2 2cd6d0bfd7812e5bccbc733167f49c37 { 'aliquot_tag': 'ALQ_cbd9c4e8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02274.WGS.T C3N-02274 UCEC WGS tumor CPT0182380007 CPT0182380007.WholeGenome.RP-1303.bam 68470778995 BAM aligned CPTAC3 3440cfa4-f5c1-46d6-b816-dfb911a87a3e 9715dece973b91991c183fa0889c8fe0 { 'aliquot_tag': 'ALQ_6346edde', 'gdc_sample_type': 'Primary Tumor' } @@ -30377,16 +32479,19 @@ C3N-02275.miRNA-Seq.T C3N-02275 HNSCC miRNA-Seq tumor CPT0163740013 190228_UNC32 C3N-02275.miRNA-Seq.T.hg38 C3N-02275 HNSCC miRNA-Seq tumor CPT0163740013 a4f118b5-8c7a-4f83-ade6-143704c36fb7_mirnaseq_gdc_realn.bam 296804470 BAM harmonized CPTAC3 b7c21ea3-609f-4e68-95e0-3550c0f9166d b66207c7c18b135f35635793bfda0b0c { 'aliquot_tag': 'ALQ_90acae17', 'gdc_sample_type': 'Primary Tumor' } C3N-02275.RNA-Seq.chimeric.A.hg38 C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 b20c5cf8-1a68-47c9-8735-d68105e4d02e.rna_seq.chimeric.gdc_realn.bam 187621702 BAM chimeric harmonized CPTAC3 2384ce2c-2c28-4405-a4da-942f63c89a8f 11951fa4aaf0bd50ee4f8d5e67fa28a0 { 'aliquot_tag': 'ALQ_769d9e79', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02275.RNA-Seq.chimeric.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 5c7aca3c-7e8b-40ae-945b-c9bbb1e9222f.rna_seq.chimeric.gdc_realn.bam 147591960 BAM chimeric harmonized CPTAC3 d76a2d60-6e9b-4956-9bbb-8dfc64254479 0d00edc17b50bd1c6443586c8bec6308 { 'aliquot_tag': 'ALQ_90acae17', 'gdc_sample_type': 'Primary Tumor' } +C3N-02275.RNA-Seq.chimeric.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 11af45c5-f22d-41f7-80f0-a1a11ba2c90e.rna_seq.chimeric.gdc_realn.bam 283249404 BAM chimeric harmonized CPTAC3 36a0d914-e84f-4bd7-978f-1476299811bf bc9743554e41a858c4264a3400140314 { 'aliquot_tag': 'ALQ_7affa0b7', 'gdc_sample_type': 'Primary Tumor' } C3N-02275.RNA-Seq.genomic.A.hg38 C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 b20c5cf8-1a68-47c9-8735-d68105e4d02e.rna_seq.genomic.gdc_realn.bam 8843741287 BAM genomic harmonized CPTAC3 8eed690d-e359-47cd-a218-2a0bf3dc2d1d af48153a5cc1f58fae3eb7d74fff88e8 { 'aliquot_tag': 'ALQ_769d9e79', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02275.RNA-Seq.genomic.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 5c7aca3c-7e8b-40ae-945b-c9bbb1e9222f.rna_seq.genomic.gdc_realn.bam 6680793373 BAM genomic harmonized CPTAC3 d7176b18-b637-4de5-b5e6-f0ca49ce6883 76dc11239d455456a37ad63b67606f36 { 'aliquot_tag': 'ALQ_90acae17', 'gdc_sample_type': 'Primary Tumor' } -C3N-02275.RNA-Seq.R1_L001.A C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L001_R1_001.fastq.gz 4009322703 FASTQ R1_L001 unaligned CPTAC3 040116b3-617f-4218-8f85-acb108ac7e81 76f2c0f3563ba2f9315f56bc64d007cf { 'aliquot_tag': 'ALQ_769d9e79', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02275.RNA-Seq.R1_L001.T C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L001_R1_001.fastq.gz 2937103692 FASTQ R1_L001 unaligned CPTAC3 398fb651-ba38-45ea-8785-3e8fa30cd8c4 2cbfeebb89635853ef2845ab9d76d08f { 'aliquot_tag': 'ALQ_90acae17', 'gdc_sample_type': 'Primary Tumor' } -C3N-02275.RNA-Seq.R1_.T C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 20210729_P3_G5_WB7988-Plate3_S77_R1_001.fastq.gz 11656395803 FASTQ R1_ unaligned CPTAC3 1de73f95-7b69-44d8-95b6-04acbf709a3a 9d5ca6329c9425a5f9d48b2621a274e5 { 'aliquot_tag': 'ALQ_7affa0b7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02275.RNA-Seq.R2_L001.A C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L001_R2_001.fastq.gz 4279251231 FASTQ R2_L001 unaligned CPTAC3 c71afded-40ae-469f-889e-ecc642a169c6 62743f8fda7ffe00d07c9f474ba2a593 { 'aliquot_tag': 'ALQ_769d9e79', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02275.RNA-Seq.R2_L001.T C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L001_R2_001.fastq.gz 3387393769 FASTQ R2_L001 unaligned CPTAC3 bb5e47dc-06a3-43fc-85e7-d273a0c2a520 3306018f7ba2906cff79ffd5c3531027 { 'aliquot_tag': 'ALQ_90acae17', 'gdc_sample_type': 'Primary Tumor' } -C3N-02275.RNA-Seq.R2_.T C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 20210729_P3_G5_WB7988-Plate3_S77_R2_001.fastq.gz 12073659426 FASTQ R2_ unaligned CPTAC3 3a2a36b9-e3d1-432c-b5be-d199207b3aa2 2a6cb585bb5386620e6e393da63a17cf { 'aliquot_tag': 'ALQ_7affa0b7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02275.RNA-Seq.genomic.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 11af45c5-f22d-41f7-80f0-a1a11ba2c90e.rna_seq.genomic.gdc_realn.bam 15643866834 BAM genomic harmonized CPTAC3 9446adfd-b078-4b38-92b5-6d0b712b3e54 87b3aa790c4faa44fd25f2c9fb0bfae0 { 'aliquot_tag': 'ALQ_7affa0b7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02275.RNA-Seq.R1_L001.A C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L001_R1_001.fastq.gz 4009322703 FASTQ R1_L001 unaligned CPTAC3 040116b3-617f-4218-8f85-acb108ac7e81 76f2c0f3563ba2f9315f56bc64d007cf { 'aliquot_tag': 'ALQ_769d9e79', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-02275.RNA-Seq.R1_L001.T C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L001_R1_001.fastq.gz 2937103692 FASTQ R1_L001 unaligned CPTAC3 398fb651-ba38-45ea-8785-3e8fa30cd8c4 2cbfeebb89635853ef2845ab9d76d08f { 'aliquot_tag': 'ALQ_90acae17', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02275.RNA-Seq.R2_L001.A C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 190215_UNC32-K00270_0147_AH3VGHBBXY_TGACCA_S4_L001_R2_001.fastq.gz 4279251231 FASTQ R2_L001 unaligned CPTAC3 c71afded-40ae-469f-889e-ecc642a169c6 62743f8fda7ffe00d07c9f474ba2a593 { 'aliquot_tag': 'ALQ_769d9e79', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-02275.RNA-Seq.R2_L001.T C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L001_R2_001.fastq.gz 3387393769 FASTQ R2_L001 unaligned CPTAC3 bb5e47dc-06a3-43fc-85e7-d273a0c2a520 3306018f7ba2906cff79ffd5c3531027 { 'aliquot_tag': 'ALQ_90acae17', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02275.RNA-Seq.T C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 20210729_P3_G5_WB7988-Plate3_S77_R1_001.fastq.gz 11656395803 FASTQ unaligned CPTAC3 1de73f95-7b69-44d8-95b6-04acbf709a3a 9d5ca6329c9425a5f9d48b2621a274e5 +C3N-02275.RNA-Seq.T C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 20210729_P3_G5_WB7988-Plate3_S77_R2_001.fastq.gz 12073659426 FASTQ unaligned CPTAC3 3a2a36b9-e3d1-432c-b5be-d199207b3aa2 2a6cb585bb5386620e6e393da63a17cf C3N-02275.RNA-Seq.transcriptome.A.hg38 C3N-02275 HNSCC RNA-Seq tissue_normal CPT0163720006 b20c5cf8-1a68-47c9-8735-d68105e4d02e.rna_seq.transcriptome.gdc_realn.bam 9634510680 BAM transcriptome harmonized CPTAC3 7c4d700c-70e4-4c29-a91f-aa770a7f7b3d 4cba6d636607c36593e4ab36bca51b27 { 'aliquot_tag': 'ALQ_769d9e79', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02275.RNA-Seq.transcriptome.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0163740013 5c7aca3c-7e8b-40ae-945b-c9bbb1e9222f.rna_seq.transcriptome.gdc_realn.bam 8468579301 BAM transcriptome harmonized CPTAC3 24648398-981d-4adc-a69e-e715f28fa62c 5e597dc6653104e2bf2938609f53856f { 'aliquot_tag': 'ALQ_90acae17', 'gdc_sample_type': 'Primary Tumor' } +C3N-02275.RNA-Seq.transcriptome.T.hg38 C3N-02275 HNSCC RNA-Seq tumor CPT0315070001 11af45c5-f22d-41f7-80f0-a1a11ba2c90e.rna_seq.transcriptome.gdc_realn.bam 12006150402 BAM transcriptome harmonized CPTAC3 32c2cb34-e4b0-4593-a60b-3cf9dd0467a3 efd280c62b98b2fb7ba0bebfc6dc97c3 { 'aliquot_tag': 'ALQ_7affa0b7', 'gdc_sample_type': 'Primary Tumor' } C3N-02275.WGS.N C3N-02275 HNSCC WGS blood_normal CPT0163780002 CPT0163780002.WholeGenome.RP-1303.bam 68574069168 BAM aligned CPTAC3 08d0aeab-6217-44af-a7a4-e7e4141bc681 7cbadbfecd4246a66c10b0dffbd33b4f { 'aliquot_tag': 'ALQ_3b4042c1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02275.WGS.N.hg38 C3N-02275 HNSCC WGS blood_normal CPT0163780002 02977102-9859-41f2-a8d4-089f6cff43cd_wgs_gdc_realn.bam 100390524184 BAM harmonized CPTAC3 c47644d9-4c56-4081-9c6a-0f6dad3a6ef5 8e9de5aa8f1a12e9384cb60fd9edcc78 { 'aliquot_tag': 'ALQ_3b4042c1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02275.WGS.T C3N-02275 HNSCC WGS tumor CPT0163740007 CPT0163740007.WholeGenome.RP-1303.bam 80591152209 BAM aligned CPTAC3 2574f176-29ea-486d-aba0-cdaed14d8a58 5f910effda981982df5d017ecd7e76b9 { 'aliquot_tag': 'ALQ_8eda5b4f', 'gdc_sample_type': 'Primary Tumor' } @@ -30405,16 +32510,19 @@ C3N-02279.miRNA-Seq.T C3N-02279 HNSCC miRNA-Seq tumor CPT0163790009 190228_UNC32 C3N-02279.miRNA-Seq.T.hg38 C3N-02279 HNSCC miRNA-Seq tumor CPT0163790009 eb0169ff-a7ad-4604-b4e3-014e2f189350_mirnaseq_gdc_realn.bam 251717006 BAM harmonized CPTAC3 aca6ac17-10e4-4ae4-89f1-197492cb37b4 0fa06f2ea83013560df776885b4871cb { 'aliquot_tag': 'ALQ_91f2b2f9', 'gdc_sample_type': 'Primary Tumor' } C3N-02279.RNA-Seq.chimeric.A.hg38 C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 b6b55841-7aa0-4d6c-a52d-a9b43ab1ae94.rna_seq.chimeric.gdc_realn.bam 166077066 BAM chimeric harmonized CPTAC3 7e6815e9-8d9f-4a85-b21f-e6fb99dce8c3 66fd041a4ea873a4da254fe46c214543 { 'aliquot_tag': 'ALQ_6db4625d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02279.RNA-Seq.chimeric.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 fc08da88-0292-4bc2-b1a1-3052ee6f1358.rna_seq.chimeric.gdc_realn.bam 284209077 BAM chimeric harmonized CPTAC3 aa5cb9a9-1345-4468-bde3-76d52c5fc783 394a860f8825e16c93798f1b6f52ae83 { 'aliquot_tag': 'ALQ_91f2b2f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02279.RNA-Seq.genomic.A.hg38 C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 b6b55841-7aa0-4d6c-a52d-a9b43ab1ae94.rna_seq.genomic.gdc_realn.bam 9455613937 BAM genomic harmonized CPTAC3 72d46c54-b9eb-4fd6-b24d-6a733443e0b5 920e9b3c2e171247f027fa413f56d114 { 'aliquot_tag': 'ALQ_6db4625d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02279.RNA-Seq.genomic.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 fc08da88-0292-4bc2-b1a1-3052ee6f1358.rna_seq.genomic.gdc_realn.bam 7794138345 BAM genomic harmonized CPTAC3 0c656d37-56de-4367-be9a-f4addd27d349 a2b5e9445097494c85b4593e451a97e1 { 'aliquot_tag': 'ALQ_91f2b2f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02279.RNA-Seq.R1_L003.A C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTCCGC_S12_L003_R1_001.fastq.gz 4308676850 FASTQ R1_L003 unaligned CPTAC3 23d0ebbf-e11d-4f60-9feb-4309f33e138d 2893521f5a95151726b34199d4d75ef3 { 'aliquot_tag': 'ALQ_6db4625d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02279.RNA-Seq.R1_L008.T C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3777560170 FASTQ R1_L008 unaligned CPTAC3 5790c14a-7d2c-4d4c-b317-582fdb290e19 d3d2582937b3ca05ad1507e6bc7085ee { 'aliquot_tag': 'ALQ_91f2b2f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02279.RNA-Seq.R1_.T C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 20210714_P1_G1_WB7988_plate1_S72_R1_001.fastq.gz 4679599672 FASTQ R1_ unaligned CPTAC3 8b6f4685-3e00-465f-9bb7-eb7c8486cbdc 49f4058424948d4b7d92fcf122342a6c { 'aliquot_tag': 'ALQ_dcd42f97', 'gdc_sample_type': 'Primary Tumor' } -C3N-02279.RNA-Seq.R2_L003.A C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTCCGC_S12_L003_R2_001.fastq.gz 4922645370 FASTQ R2_L003 unaligned CPTAC3 19859e6c-d4e5-48ed-9b1a-ca851ca52ae4 7ee3f02535279eea93fd9343b819836e { 'aliquot_tag': 'ALQ_6db4625d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02279.RNA-Seq.R2_L008.T C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 4170241292 FASTQ R2_L008 unaligned CPTAC3 61c16e4d-4598-41ad-ace3-a4ef8ecaeaa3 8b527f86a1565a732df619d4712c0e58 { 'aliquot_tag': 'ALQ_91f2b2f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02279.RNA-Seq.R2_.T C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 20210714_P1_G1_WB7988_plate1_S72_R2_001.fastq.gz 4861223681 FASTQ R2_ unaligned CPTAC3 97da9260-a2d7-4733-8992-31d59e7fcdcb 786cc51d4671f1be3bc460cf2c046f58 { 'aliquot_tag': 'ALQ_dcd42f97', 'gdc_sample_type': 'Primary Tumor' } +C3N-02279.RNA-Seq.chimeric.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 27b987fe-03e5-4562-858b-dcc6fb21da5e.rna_seq.chimeric.gdc_realn.bam 85432863 BAM chimeric harmonized CPTAC3 1dcfcace-e898-4f9b-8dbc-6ea0d7fc9450 ec3f6f494872bcebf545901fa6b9fe0a { 'aliquot_tag': 'ALQ_dcd42f97', 'gdc_sample_type': 'Primary Tumor' } +C3N-02279.RNA-Seq.genomic.A.hg38 C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 b6b55841-7aa0-4d6c-a52d-a9b43ab1ae94.rna_seq.genomic.gdc_realn.bam 9455613937 BAM genomic harmonized CPTAC3 ef8ca72c-7c27-4b9f-bae2-a0ba9eeeedc9 920e9b3c2e171247f027fa413f56d114 { 'aliquot_tag': 'ALQ_6db4625d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02279.RNA-Seq.genomic.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 fc08da88-0292-4bc2-b1a1-3052ee6f1358.rna_seq.genomic.gdc_realn.bam 7794138345 BAM genomic harmonized CPTAC3 8abda2b9-172a-4d0a-9117-85be0742dd92 a2b5e9445097494c85b4593e451a97e1 { 'aliquot_tag': 'ALQ_91f2b2f9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02279.RNA-Seq.genomic.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 27b987fe-03e5-4562-858b-dcc6fb21da5e.rna_seq.genomic.gdc_realn.bam 6679630882 BAM genomic harmonized CPTAC3 61a54a0d-43e7-4081-936a-ff241c275a12 9231f2d847e4c2b8cc7be3c176a23c53 { 'aliquot_tag': 'ALQ_dcd42f97', 'gdc_sample_type': 'Primary Tumor' } +C3N-02279.RNA-Seq.R1_L003.A C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTCCGC_S12_L003_R1_001.fastq.gz 4308676850 FASTQ R1_L003 unaligned CPTAC3 23d0ebbf-e11d-4f60-9feb-4309f33e138d 2893521f5a95151726b34199d4d75ef3 { 'aliquot_tag': 'ALQ_6db4625d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02279.RNA-Seq.R1_L008.T C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L008_R1_001.fastq.gz 3777560170 FASTQ R1_L008 unaligned CPTAC3 5790c14a-7d2c-4d4c-b317-582fdb290e19 d3d2582937b3ca05ad1507e6bc7085ee { 'aliquot_tag': 'ALQ_91f2b2f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02279.RNA-Seq.R2_L003.A C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 190215_UNC32-K00270_0147_AH3VGHBBXY_GTCCGC_S12_L003_R2_001.fastq.gz 4922645370 FASTQ R2_L003 unaligned CPTAC3 19859e6c-d4e5-48ed-9b1a-ca851ca52ae4 7ee3f02535279eea93fd9343b819836e { 'aliquot_tag': 'ALQ_6db4625d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02279.RNA-Seq.R2_L008.T C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L008_R2_001.fastq.gz 4170241292 FASTQ R2_L008 unaligned CPTAC3 61c16e4d-4598-41ad-ace3-a4ef8ecaeaa3 8b527f86a1565a732df619d4712c0e58 { 'aliquot_tag': 'ALQ_91f2b2f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02279.RNA-Seq.T C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 20210714_P1_G1_WB7988_plate1_S72_R1_001.fastq.gz 4679599672 FASTQ unaligned CPTAC3 8b6f4685-3e00-465f-9bb7-eb7c8486cbdc 49f4058424948d4b7d92fcf122342a6c +C3N-02279.RNA-Seq.T C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 20210714_P1_G1_WB7988_plate1_S72_R2_001.fastq.gz 4861223681 FASTQ unaligned CPTAC3 97da9260-a2d7-4733-8992-31d59e7fcdcb 786cc51d4671f1be3bc460cf2c046f58 C3N-02279.RNA-Seq.transcriptome.A.hg38 C3N-02279 HNSCC RNA-Seq tissue_normal CPT0163800009 b6b55841-7aa0-4d6c-a52d-a9b43ab1ae94.rna_seq.transcriptome.gdc_realn.bam 13256796003 BAM transcriptome harmonized CPTAC3 a9f96d1c-ebcf-445e-8f2d-a7cef965c1d3 0989096a1c457f965e3c332e3b0f9116 { 'aliquot_tag': 'ALQ_6db4625d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02279.RNA-Seq.transcriptome.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0163790009 fc08da88-0292-4bc2-b1a1-3052ee6f1358.rna_seq.transcriptome.gdc_realn.bam 11357438264 BAM transcriptome harmonized CPTAC3 f5268749-77c5-4144-817b-073a77c87c68 53d96c013461e7aae2386f35d7f75a9d { 'aliquot_tag': 'ALQ_91f2b2f9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02279.RNA-Seq.transcriptome.T.hg38 C3N-02279 HNSCC RNA-Seq tumor CPT0315090011 27b987fe-03e5-4562-858b-dcc6fb21da5e.rna_seq.transcriptome.gdc_realn.bam 6152849827 BAM transcriptome harmonized CPTAC3 40e928d5-d8a5-45a5-81d9-31f403506b30 263f54d55d201f0a4e76db3d21e7c013 { 'aliquot_tag': 'ALQ_dcd42f97', 'gdc_sample_type': 'Primary Tumor' } C3N-02279.WGS.N C3N-02279 HNSCC WGS blood_normal CPT0163830002 CPT0163830002.WholeGenome.RP-1303.bam 58442437684 BAM aligned CPTAC3 50dc9c68-a86e-40c9-bf89-331f2276cb15 1cec86e23ba3fdf11eed458fb839406c { 'aliquot_tag': 'ALQ_bdc6c105', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02279.WGS.N.hg38 C3N-02279 HNSCC WGS blood_normal CPT0163830002 99137d4f-1ecb-4abd-a812-4774f6cf0077_wgs_gdc_realn.bam 85364042656 BAM harmonized CPTAC3 adcc2a18-410c-4048-8135-197da04d8795 4b41418bfbc8d0b54da02dd123763ead { 'aliquot_tag': 'ALQ_bdc6c105', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02279.WGS.T C3N-02279 HNSCC WGS tumor CPT0163790006 CPT0163790006.WholeGenome.RP-1303.bam 68012707910 BAM aligned CPTAC3 15b0e2bd-fe7b-4c39-ba0c-6681668eaa29 ca239a4a6d799cb98422a66ca09e2b1d { 'aliquot_tag': 'ALQ_14daf68', 'gdc_sample_type': 'Primary Tumor' } @@ -30433,16 +32541,16 @@ C3N-02281.miRNA-Seq.A C3N-02281 LUAD miRNA-Seq tissue_normal CPT0125430009 19013 C3N-02281.miRNA-Seq.A.hg38 C3N-02281 LUAD miRNA-Seq tissue_normal CPT0125430009 880c7fa4-4d21-4ddd-944a-93ba863a3e8d_mirnaseq_gdc_realn.bam 247936755 BAM harmonized CPTAC3 56bd5702-9510-4389-87bb-ac725a4480d0 9e1baba8975d8ce85dc3ef85ae6cf94c { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02281.miRNA-Seq.T C3N-02281 LUAD miRNA-Seq tumor CPT0125410010 190108_UNC31-K00269_0176_AHYGLVBBXX_AGTCAA_S13_L004_R1_001.unaln.bam 190110257 BAM unaligned CPTAC3 009eaeab-e392-4c73-9604-c866d63de0f9 a6c92737e780a14fd9ed959796e4c10c { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor' } C3N-02281.miRNA-Seq.T.hg38 C3N-02281 LUAD miRNA-Seq tumor CPT0125410010 4949602d-2dc0-404c-9e3e-8c6da447394a_mirnaseq_gdc_realn.bam 205117376 BAM harmonized CPTAC3 fe2e75df-a976-41a8-a080-e81b8086fe98 a6864a098e0403305f3f0ef4d55502c2 { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor' } -C3N-02281.RNA-Seq.chimeric.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 367471e3-0c03-4717-8d34-71244e390f59.rna_seq.chimeric.gdc_realn.bam 33188678 BAM chimeric harmonized CPTAC3 d4e75089-1449-4912-9fdc-0a49ac9f2c22 89d0d06280eb74f79fdf481d17cba6bc { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02281.RNA-Seq.chimeric.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 b0252ff6-d936-431f-887c-3bf4e16ba344.rna_seq.chimeric.gdc_realn.bam 45032633 BAM chimeric harmonized CPTAC3 85c71dbb-1d57-4c23-b16f-a32e3e145f3d 33f954febd3771076e18851ae740e86a { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor' } -C3N-02281.RNA-Seq.genomic.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 367471e3-0c03-4717-8d34-71244e390f59.rna_seq.genomic.gdc_realn.bam 9886593134 BAM genomic harmonized CPTAC3 b2953397-7d58-4fb8-b6ea-4cc72d93a1c8 a081999b33857efae2a664ee565638b9 { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02281.RNA-Seq.genomic.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 b0252ff6-d936-431f-887c-3bf4e16ba344.rna_seq.genomic.gdc_realn.bam 8202075031 BAM genomic harmonized CPTAC3 c4c8cbbb-c7c5-4492-874e-57d5191b7bcf d10bd0cd11175d35d3f606cdd3613a0f { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor' } -C3N-02281.RNA-Seq.R1_L004.T C3N-02281 LUAD RNA-Seq tumor CPT0125410010 190115_UNC31-K00269_0179_BH357YBBXY_AGTCAA_S9_L004_R1_001.fastq.gz 3430704335 FASTQ R1_L004 unaligned CPTAC3 1da3b0ea-41c6-45f1-baa1-32ff4b3b1296 f66e4fef03cbad90eb45836380b75b32 { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor' } -C3N-02281.RNA-Seq.R1_L007.A C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 190118_UNC32-K00270_0139_AH3CHKBBXY_CGATGT_S2_L007_R1_001.fastq.gz 4032956462 FASTQ R1_L007 unaligned CPTAC3 f685ad18-72c1-485a-88b1-b9e30fc85df8 4e5cbba8e57463b37f145eda515dd8ae { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02281.RNA-Seq.R2_L004.T C3N-02281 LUAD RNA-Seq tumor CPT0125410010 190115_UNC31-K00269_0179_BH357YBBXY_AGTCAA_S9_L004_R2_001.fastq.gz 3682548491 FASTQ R2_L004 unaligned CPTAC3 9fc7e956-14f9-4adf-80d7-3696cc4b3ee4 d35bcfd6a8a9aeabe3494e8ffe239e83 { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor' } -C3N-02281.RNA-Seq.R2_L007.A C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 190118_UNC32-K00270_0139_AH3CHKBBXY_CGATGT_S2_L007_R2_001.fastq.gz 3969347389 FASTQ R2_L007 unaligned CPTAC3 a9293f07-a5f3-4d53-895d-c4a3ed9f51f1 4fd1fc34f2e3578f316ecadc609f0359 { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02281.RNA-Seq.transcriptome.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 367471e3-0c03-4717-8d34-71244e390f59.rna_seq.transcriptome.gdc_realn.bam 8971664073 BAM transcriptome harmonized CPTAC3 3c85c2e5-ec78-411a-bc17-297dea17a8c9 56ace569c791dc9df241a95016846167 { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02281.RNA-Seq.transcriptome.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 b0252ff6-d936-431f-887c-3bf4e16ba344.rna_seq.transcriptome.gdc_realn.bam 8244914571 BAM transcriptome harmonized CPTAC3 c42499ee-759c-436f-ab23-c92b55323444 261fbfe8e0a068ced7fe67d1cac8b8af { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor' } +C3N-02281.RNA-Seq.chimeric.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 d585ac34-4fd8-4f08-bc20-319486569596.rna_seq.chimeric.gdc_realn.bam 33203760 BAM chimeric harmonized CPTAC3 37b88442-6ff0-412f-b63e-a2fff248653f ae22382d5d4eed7bbfdb1aa49745f82f { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02281.RNA-Seq.chimeric.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 14140b5d-8165-4188-a1d7-5df779da410e.rna_seq.chimeric.gdc_realn.bam 45036502 BAM chimeric harmonized CPTAC3 8d490c16-44de-4add-8174-4424d7f62a84 35cbdced3ff64031472c461a9a69b564 { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor' } +C3N-02281.RNA-Seq.genomic.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 d585ac34-4fd8-4f08-bc20-319486569596.rna_seq.genomic.gdc_realn.bam 9888368408 BAM genomic harmonized CPTAC3 cc784c10-1105-4417-b562-7bc35bdea15d a2bf3417c144b7749b184dc53ce02189 { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02281.RNA-Seq.genomic.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 14140b5d-8165-4188-a1d7-5df779da410e.rna_seq.genomic.gdc_realn.bam 8203962418 BAM genomic harmonized CPTAC3 3a84bf68-5f2c-4e13-b6d1-bfa4d0d547e6 8f2ea98ada4882680e4ac609a1454877 { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor' } +C3N-02281.RNA-Seq.R1_L004.T C3N-02281 LUAD RNA-Seq tumor CPT0125410010 190115_UNC31-K00269_0179_BH357YBBXY_AGTCAA_S9_L004_R1_001.fastq.gz 3430704335 FASTQ R1_L004 unaligned CPTAC3 1da3b0ea-41c6-45f1-baa1-32ff4b3b1296 f66e4fef03cbad90eb45836380b75b32 { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02281.RNA-Seq.R1_L007.A C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 190118_UNC32-K00270_0139_AH3CHKBBXY_CGATGT_S2_L007_R1_001.fastq.gz 4032956462 FASTQ R1_L007 unaligned CPTAC3 f685ad18-72c1-485a-88b1-b9e30fc85df8 4e5cbba8e57463b37f145eda515dd8ae { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02281.RNA-Seq.R2_L004.T C3N-02281 LUAD RNA-Seq tumor CPT0125410010 190115_UNC31-K00269_0179_BH357YBBXY_AGTCAA_S9_L004_R2_001.fastq.gz 3682548491 FASTQ R2_L004 unaligned CPTAC3 9fc7e956-14f9-4adf-80d7-3696cc4b3ee4 d35bcfd6a8a9aeabe3494e8ffe239e83 { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02281.RNA-Seq.R2_L007.A C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 190118_UNC32-K00270_0139_AH3CHKBBXY_CGATGT_S2_L007_R2_001.fastq.gz 3969347389 FASTQ R2_L007 unaligned CPTAC3 a9293f07-a5f3-4d53-895d-c4a3ed9f51f1 4fd1fc34f2e3578f316ecadc609f0359 { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02281.RNA-Seq.transcriptome.A.hg38 C3N-02281 LUAD RNA-Seq tissue_normal CPT0125430009 d585ac34-4fd8-4f08-bc20-319486569596.rna_seq.transcriptome.gdc_realn.bam 9954847995 BAM transcriptome harmonized CPTAC3 12e981c9-3bee-4d29-8583-f157fd7c57cb 9d1793eab241ba24d102aa39eac2a195 { 'aliquot_tag': 'ALQ_ba4ce336', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02281.RNA-Seq.transcriptome.T.hg38 C3N-02281 LUAD RNA-Seq tumor CPT0125410010 14140b5d-8165-4188-a1d7-5df779da410e.rna_seq.transcriptome.gdc_realn.bam 9199442095 BAM transcriptome harmonized CPTAC3 7abf7d28-b236-4d5e-8090-bb93ee173fe6 5f4e4899242b9b8e951a86f9a0c36226 { 'aliquot_tag': 'ALQ_a04b39b3', 'gdc_sample_type': 'Primary Tumor' } C3N-02281.WGS.N C3N-02281 LUAD WGS blood_normal CPT0126370002 CPT0126370002.WholeGenome.RP-1303.bam 127725562907 BAM aligned CPTAC3 01b29078-1007-4d5c-8325-722222cb2654 170e258c98d6ecc93dcbac7d12458226 { 'aliquot_tag': 'ALQ_f4f3b65b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02281.WGS.N.hg38 C3N-02281 LUAD WGS blood_normal CPT0126370002 eee93c9f-9262-4282-8d2a-0578765798f1_wgs_gdc_realn.bam 183811379400 BAM harmonized CPTAC3 7f737b76-e356-4e8d-8e69-6cc4cdf24de6 46bde155dff03c8ba7bd056b15e12cc1 { 'aliquot_tag': 'ALQ_f4f3b65b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02281.WGS.T C3N-02281 LUAD WGS tumor CPT0125410007 CPT0125410007.WholeGenome.RP-1303.bam 52336193366 BAM aligned CPTAC3 9729575f-8df3-4af0-9850-e90357b48560 e7110f4e7dc6e215db9c82381f2118c6 { 'aliquot_tag': 'ALQ_27349d51', 'gdc_sample_type': 'Primary Tumor' } @@ -30461,16 +32569,16 @@ C3N-02282.miRNA-Seq.A C3N-02282 LUAD miRNA-Seq tissue_normal CPT0125370009 19013 C3N-02282.miRNA-Seq.A.hg38 C3N-02282 LUAD miRNA-Seq tissue_normal CPT0125370009 5f067cb0-9f61-42a8-96bd-7ccdbe22ab6e_mirnaseq_gdc_realn.bam 206476495 BAM harmonized CPTAC3 15912179-7eca-4f63-9156-d22726841c58 d4b6ab0e0063865a88248b356cdfdb63 { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02282.miRNA-Seq.T C3N-02282 LUAD miRNA-Seq tumor CPT0125360009 190108_UNC31-K00269_0176_AHYGLVBBXX_CTTGTA_S12_L004_R1_001.unaln.bam 254204558 BAM unaligned CPTAC3 ee60f0c2-ad5d-4fdb-b937-540e6b8afc99 9e74e5f9ea0a254f82a839a20930ca12 { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor' } C3N-02282.miRNA-Seq.T.hg38 C3N-02282 LUAD miRNA-Seq tumor CPT0125360009 12a9846f-011b-426a-8826-c49850b9d70a_mirnaseq_gdc_realn.bam 294604144 BAM harmonized CPTAC3 24ce12c4-8277-46dc-a9cd-028bc8ff3f27 72d5dd6a63f2b13e4ed666e6a1b0e701 { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02282.RNA-Seq.chimeric.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 a06e8103-9220-4fa4-819d-3ba31bcf7561.rna_seq.chimeric.gdc_realn.bam 33903244 BAM chimeric harmonized CPTAC3 f64bb787-7a24-40bf-957f-cbfcd0840620 8b3378124661d6c82e2ad134344d1686 { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02282.RNA-Seq.chimeric.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 42f073e0-de61-4281-b5b6-58a0271e5660.rna_seq.chimeric.gdc_realn.bam 57146045 BAM chimeric harmonized CPTAC3 66e7a59a-9de5-416b-9936-a216d2182a55 55c74b1edf8379f38d0f476f0241d96a { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02282.RNA-Seq.genomic.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 a06e8103-9220-4fa4-819d-3ba31bcf7561.rna_seq.genomic.gdc_realn.bam 9096172021 BAM genomic harmonized CPTAC3 ba5b58a0-691d-42b0-86e7-5467026cf787 04b7783f82968ff6c58e7084b28c671c { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02282.RNA-Seq.genomic.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 42f073e0-de61-4281-b5b6-58a0271e5660.rna_seq.genomic.gdc_realn.bam 11005783995 BAM genomic harmonized CPTAC3 93381613-32d1-45f1-a4a4-0b7befb311b4 2487ec4f3a12962114875148d30d4c81 { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02282.RNA-Seq.R1_L001.T C3N-02282 LUAD RNA-Seq tumor CPT0125360009 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L001_R1_001.fastq.gz 4404537471 FASTQ R1_L001 unaligned CPTAC3 6338da8c-f507-48c2-bba4-2af1ac296264 f18aceac96e479584315bf3586aa7639 { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02282.RNA-Seq.R1_L007.A C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 190118_UNC32-K00270_0139_AH3CHKBBXY_ATCACG_S3_L007_R1_001.fastq.gz 4085745493 FASTQ R1_L007 unaligned CPTAC3 16b48db8-7cbb-4af2-94b5-b658404c20e0 27a710cd00cb4049216b327bfbba4439 { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02282.RNA-Seq.R2_L001.T C3N-02282 LUAD RNA-Seq tumor CPT0125360009 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L001_R2_001.fastq.gz 4930252213 FASTQ R2_L001 unaligned CPTAC3 7caa8479-13a6-4636-bc5d-93fec5dfcde2 c520abec2035b8e1b50e25ea924486fb { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02282.RNA-Seq.R2_L007.A C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 190118_UNC32-K00270_0139_AH3CHKBBXY_ATCACG_S3_L007_R2_001.fastq.gz 3741001751 FASTQ R2_L007 unaligned CPTAC3 2cef00bf-87fb-4cc3-9f67-7693145b0e01 51f82b6372d74d5fffe5f0f3f6e5f978 { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02282.RNA-Seq.transcriptome.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 a06e8103-9220-4fa4-819d-3ba31bcf7561.rna_seq.transcriptome.gdc_realn.bam 8235785977 BAM transcriptome harmonized CPTAC3 23799fc5-9e07-4d74-bc1c-5d1abc94ab4b 4b67ba1cd668cd5c8e4560effa311910 { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02282.RNA-Seq.transcriptome.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 42f073e0-de61-4281-b5b6-58a0271e5660.rna_seq.transcriptome.gdc_realn.bam 9930830723 BAM transcriptome harmonized CPTAC3 cf22cf2d-7077-4aee-908d-209117169f35 9e7e91da16d17849c2bde1d67d9bfb31 { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor' } +C3N-02282.RNA-Seq.chimeric.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 96952dc9-bcf1-4998-b622-f1fabd140d8e.rna_seq.chimeric.gdc_realn.bam 33898275 BAM chimeric harmonized CPTAC3 8dd9ed4b-4e90-407b-80e1-92e0dbc7fe76 6155fdedb18f875412dc4d31559a7d7f { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02282.RNA-Seq.chimeric.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 b01ca1ea-6a7e-4563-b297-97b40c71613a.rna_seq.chimeric.gdc_realn.bam 57123237 BAM chimeric harmonized CPTAC3 2028a45b-ee7c-4d7d-a21c-c4dc282dd6a9 9cf5ee016ff99a78781137237979ce3d { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor' } +C3N-02282.RNA-Seq.genomic.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 96952dc9-bcf1-4998-b622-f1fabd140d8e.rna_seq.genomic.gdc_realn.bam 9096918554 BAM genomic harmonized CPTAC3 14c3de9d-31e0-4fe4-9603-bcc328262951 e2c3f19f108601a7fe4b8a0feb9370ee { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02282.RNA-Seq.genomic.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 b01ca1ea-6a7e-4563-b297-97b40c71613a.rna_seq.genomic.gdc_realn.bam 11016665539 BAM genomic harmonized CPTAC3 2284bf8e-21aa-4aaf-8381-e34f4d6ea064 10bb8b1bb6f5d05570973fb76c366ea8 { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor' } +C3N-02282.RNA-Seq.R1_L001.T C3N-02282 LUAD RNA-Seq tumor CPT0125360009 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L001_R1_001.fastq.gz 4404537471 FASTQ R1_L001 unaligned CPTAC3 6338da8c-f507-48c2-bba4-2af1ac296264 f18aceac96e479584315bf3586aa7639 { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02282.RNA-Seq.R1_L007.A C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 190118_UNC32-K00270_0139_AH3CHKBBXY_ATCACG_S3_L007_R1_001.fastq.gz 4085745493 FASTQ R1_L007 unaligned CPTAC3 16b48db8-7cbb-4af2-94b5-b658404c20e0 27a710cd00cb4049216b327bfbba4439 { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02282.RNA-Seq.R2_L001.T C3N-02282 LUAD RNA-Seq tumor CPT0125360009 190117_UNC31-K00269_0180_AH35VKBBXY_CTTGTA_S4_L001_R2_001.fastq.gz 4930252213 FASTQ R2_L001 unaligned CPTAC3 7caa8479-13a6-4636-bc5d-93fec5dfcde2 c520abec2035b8e1b50e25ea924486fb { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02282.RNA-Seq.R2_L007.A C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 190118_UNC32-K00270_0139_AH3CHKBBXY_ATCACG_S3_L007_R2_001.fastq.gz 3741001751 FASTQ R2_L007 unaligned CPTAC3 2cef00bf-87fb-4cc3-9f67-7693145b0e01 51f82b6372d74d5fffe5f0f3f6e5f978 { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02282.RNA-Seq.transcriptome.A.hg38 C3N-02282 LUAD RNA-Seq tissue_normal CPT0125370009 96952dc9-bcf1-4998-b622-f1fabd140d8e.rna_seq.transcriptome.gdc_realn.bam 9240302691 BAM transcriptome harmonized CPTAC3 d46f08ce-3408-4524-946d-51b76419ab4a aa26af1418b367b7602d94dd0ce3f2e6 { 'aliquot_tag': 'ALQ_52c9754e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02282.RNA-Seq.transcriptome.T.hg38 C3N-02282 LUAD RNA-Seq tumor CPT0125360009 b01ca1ea-6a7e-4563-b297-97b40c71613a.rna_seq.transcriptome.gdc_realn.bam 10932743546 BAM transcriptome harmonized CPTAC3 68c728bc-ee85-4217-80b9-fcf52f072950 da3308af60ae7839019f8d4c50fc824f { 'aliquot_tag': 'ALQ_6fa95cfe', 'gdc_sample_type': 'Primary Tumor' } C3N-02282.WGS.N C3N-02282 LUAD WGS blood_normal CPT0125400002 CPT0125400002.WholeGenome.RP-1303.bam 81921335333 BAM aligned CPTAC3 269f1c9d-6156-4912-b4b2-51891c8ce87c 27a577b49036f9fbf9ca4fc76ba13668 { 'aliquot_tag': 'ALQ_6a3e406e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02282.WGS.N.hg38 C3N-02282 LUAD WGS blood_normal CPT0125400002 8b5a5693-cd27-4083-9581-3c748292040a_wgs_gdc_realn.bam 118618949521 BAM harmonized CPTAC3 e2b57e57-7458-491d-89d1-5e89648ff462 4eb8e0ef3162e1ba8291018ecbeafc0b { 'aliquot_tag': 'ALQ_6a3e406e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02282.WGS.T C3N-02282 LUAD WGS tumor CPT0125360006 CPT0125360006.WholeGenome.RP-1303.bam 106521647206 BAM aligned CPTAC3 f917a8a7-04ba-4dbe-af1b-d28201398a7b f4e5dd0d580b511205e66751fef613fb { 'aliquot_tag': 'ALQ_ff16416f', 'gdc_sample_type': 'Primary Tumor' } @@ -30487,8 +32595,8 @@ C3N-02283.miRNA-Seq.T C3N-02283 LSCC miRNA-Seq tumor CPT0126530009 181219_UNC31- C3N-02283.miRNA-Seq.T.hg38 C3N-02283 LSCC miRNA-Seq tumor CPT0126530009 633d890f-672b-4360-85ce-9dcdf33d0da8_mirnaseq_gdc_realn.bam 242378206 BAM harmonized CPTAC3 b3f546a5-5ba4-4a35-a2b5-50884016aab7 497454329f2e7f133cfbe22c82e0010c { 'aliquot_tag': 'ALQ_40f82a0e', 'gdc_sample_type': 'Primary Tumor' } C3N-02283.RNA-Seq.chimeric.T.hg38 C3N-02283 LSCC RNA-Seq tumor CPT0126530009 0254d76e-9318-41d2-8028-60d965d8723a.rna_seq.chimeric.gdc_realn.bam 31831563 BAM chimeric harmonized CPTAC3 c39ee19b-52fc-45a5-a49a-c2cc0597b9fb d4ef16b5afc369952be817e2682759bc { 'aliquot_tag': 'ALQ_40f82a0e', 'gdc_sample_type': 'Primary Tumor' } C3N-02283.RNA-Seq.genomic.T.hg38 C3N-02283 LSCC RNA-Seq tumor CPT0126530009 0254d76e-9318-41d2-8028-60d965d8723a.rna_seq.genomic.gdc_realn.bam 9332805898 BAM genomic harmonized CPTAC3 9c544cbc-4157-45f2-8511-5b6c15b5baed 1a69311934575fe91948c348031cc231 { 'aliquot_tag': 'ALQ_40f82a0e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02283.RNA-Seq.R1_L002.T C3N-02283 LSCC RNA-Seq tumor CPT0126530009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 4460676897 FASTQ R1_L002 unaligned CPTAC3 ebb3c067-6c73-4e96-a828-c824166f7e19 5507d4301c2cebaf87168111ce7018d9 { 'aliquot_tag': 'ALQ_40f82a0e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02283.RNA-Seq.R2_L002.T C3N-02283 LSCC RNA-Seq tumor CPT0126530009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4753976657 FASTQ R2_L002 unaligned CPTAC3 188620f0-3a3d-4484-b78d-b275cd775360 51b15353721216095ee0f4b1aad5e5f5 { 'aliquot_tag': 'ALQ_40f82a0e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02283.RNA-Seq.R1_L002.T C3N-02283 LSCC RNA-Seq tumor CPT0126530009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L002_R1_001.fastq.gz 4460676897 FASTQ R1_L002 unaligned CPTAC3 ebb3c067-6c73-4e96-a828-c824166f7e19 5507d4301c2cebaf87168111ce7018d9 { 'aliquot_tag': 'ALQ_40f82a0e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02283.RNA-Seq.R2_L002.T C3N-02283 LSCC RNA-Seq tumor CPT0126530009 180926_UNC31-K00269_0155_AHWN7WBBXX_ATTCCT_S7_L002_R2_001.fastq.gz 4753976657 FASTQ R2_L002 unaligned CPTAC3 188620f0-3a3d-4484-b78d-b275cd775360 51b15353721216095ee0f4b1aad5e5f5 { 'aliquot_tag': 'ALQ_40f82a0e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-02283.RNA-Seq.transcriptome.T.hg38 C3N-02283 LSCC RNA-Seq tumor CPT0126530009 0254d76e-9318-41d2-8028-60d965d8723a.rna_seq.transcriptome.gdc_realn.bam 12699192149 BAM transcriptome harmonized CPTAC3 d819103e-797a-47f2-88c8-a64b01fb6f24 244792fceaea88d30b5b1157e19c94e7 { 'aliquot_tag': 'ALQ_40f82a0e', 'gdc_sample_type': 'Primary Tumor' } C3N-02283.WGS.N C3N-02283 LSCC WGS blood_normal CPT0126580002 CPT0126580002.WholeGenome.RP-1303.bam 56423682667 BAM aligned CPTAC3 2414d0b0-e2dc-4426-849b-3376f23d2b23 7c269cd4abf789b2ce4f45141719db8c { 'aliquot_tag': 'ALQ_a0fac297', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02283.WGS.N.hg38 C3N-02283 LSCC WGS blood_normal CPT0126580002 19aa271d-2103-4fad-a065-5301809f651f_wgs_gdc_realn.bam 82170772698 BAM harmonized CPTAC3 02d030b5-5b7a-41c9-ba6e-12c6db1eb429 2672bf91fbf6935e5386855fc2c45e48 { 'aliquot_tag': 'ALQ_a0fac297', 'gdc_sample_type': 'Blood Derived Normal' } @@ -30504,8 +32612,8 @@ C3N-02284.miRNA-Seq.T C3N-02284 LSCC miRNA-Seq tumor CPT0126670009 181219_UNC31- C3N-02284.miRNA-Seq.T.hg38 C3N-02284 LSCC miRNA-Seq tumor CPT0126670009 1662a921-df29-47ca-afb6-3140f34d05c8_mirnaseq_gdc_realn.bam 229472610 BAM harmonized CPTAC3 d66c6990-fa00-42b2-b29b-c866291d034c 7c5043bc8231399c7bcf0c97aeab7d48 { 'aliquot_tag': 'ALQ_33ecfe60', 'gdc_sample_type': 'Primary Tumor' } C3N-02284.RNA-Seq.chimeric.T.hg38 C3N-02284 LSCC RNA-Seq tumor CPT0126670009 ed4b7d24-ec7e-41cc-a6cc-86120f5c11d6.rna_seq.chimeric.gdc_realn.bam 22308776 BAM chimeric harmonized CPTAC3 b629f164-5444-48e3-9357-a68d83bc5c1c a99ad0fc0a72f355ba555058f195292b { 'aliquot_tag': 'ALQ_33ecfe60', 'gdc_sample_type': 'Primary Tumor' } C3N-02284.RNA-Seq.genomic.T.hg38 C3N-02284 LSCC RNA-Seq tumor CPT0126670009 ed4b7d24-ec7e-41cc-a6cc-86120f5c11d6.rna_seq.genomic.gdc_realn.bam 5193125932 BAM genomic harmonized CPTAC3 586accd8-e5bc-4746-9f6e-b9b668685f8b d24884c0a13f547d3306c761a021bc6c { 'aliquot_tag': 'ALQ_33ecfe60', 'gdc_sample_type': 'Primary Tumor' } -C3N-02284.RNA-Seq.R1_L001.T C3N-02284 LSCC RNA-Seq tumor CPT0126670009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 2488873957 FASTQ R1_L001 unaligned CPTAC3 81ffa1ef-11cc-46aa-885f-221adaf31d29 ce382177f72b28439b41fe2b19750771 { 'aliquot_tag': 'ALQ_33ecfe60', 'gdc_sample_type': 'Primary Tumor' } -C3N-02284.RNA-Seq.R2_L001.T C3N-02284 LSCC RNA-Seq tumor CPT0126670009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 2647028789 FASTQ R2_L001 unaligned CPTAC3 79b7cc72-625d-4585-872f-acd84a75a90d 6826e8ea5daa4c7b5188f9f99b6084f9 { 'aliquot_tag': 'ALQ_33ecfe60', 'gdc_sample_type': 'Primary Tumor' } +C3N-02284.RNA-Seq.R1_L001.T C3N-02284 LSCC RNA-Seq tumor CPT0126670009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 2488873957 FASTQ R1_L001 unaligned CPTAC3 81ffa1ef-11cc-46aa-885f-221adaf31d29 ce382177f72b28439b41fe2b19750771 { 'aliquot_tag': 'ALQ_33ecfe60', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02284.RNA-Seq.R2_L001.T C3N-02284 LSCC RNA-Seq tumor CPT0126670009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 2647028789 FASTQ R2_L001 unaligned CPTAC3 79b7cc72-625d-4585-872f-acd84a75a90d 6826e8ea5daa4c7b5188f9f99b6084f9 { 'aliquot_tag': 'ALQ_33ecfe60', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-02284.RNA-Seq.transcriptome.T.hg38 C3N-02284 LSCC RNA-Seq tumor CPT0126670009 ed4b7d24-ec7e-41cc-a6cc-86120f5c11d6.rna_seq.transcriptome.gdc_realn.bam 6884290622 BAM transcriptome harmonized CPTAC3 e44117f2-2e4b-48f1-ab76-2095e9e1948a fa1261079f1cc8d288df422b56bf1e14 { 'aliquot_tag': 'ALQ_33ecfe60', 'gdc_sample_type': 'Primary Tumor' } C3N-02284.WGS.N C3N-02284 LSCC WGS blood_normal CPT0126730002 CPT0126730002.WholeGenome.RP-1303.bam 68299075959 BAM aligned CPTAC3 739342b8-92bd-4f17-9227-197c6d5a1744 4b6564a19a3c1e42f27f37c2f36431b9 { 'aliquot_tag': 'ALQ_9ae2528d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02284.WGS.N.hg38 C3N-02284 LSCC WGS blood_normal CPT0126730002 c791c2be-5334-4d7b-9ab0-91a698b7efb9_wgs_gdc_realn.bam 100197693005 BAM harmonized CPTAC3 34c364ee-f9e4-4e0e-8e9a-52de011021b4 3ec1d2fcae05f9fe011e8b447fa6acef { 'aliquot_tag': 'ALQ_9ae2528d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -30526,11 +32634,11 @@ C3N-02285.miRNA-Seq.T.hg38 C3N-02285 LSCC miRNA-Seq tumor CPT0126740009 7dfa1d2f C3N-02285.RNA-Seq.chimeric.A.hg38 C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 565e7e03-2229-40cd-86e6-8cabc225bd21.rna_seq.chimeric.gdc_realn.bam 30892936 BAM chimeric harmonized CPTAC3 7aec2d32-8091-4092-baa6-7ae472808c54 01cbfd51ace14debd69bafa971fd9fdb { 'aliquot_tag': 'ALQ_c5d00475', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02285.RNA-Seq.chimeric.T.hg38 C3N-02285 LSCC RNA-Seq tumor CPT0126740009 6092fdeb-bdf7-49c0-b6e2-fcb5244df186.rna_seq.chimeric.gdc_realn.bam 24907459 BAM chimeric harmonized CPTAC3 02e44361-7c11-4d54-9295-a1c51a4cf541 872d5d7b81007d382763d6d2c1349d0f { 'aliquot_tag': 'ALQ_bf105715', 'gdc_sample_type': 'Primary Tumor' } C3N-02285.RNA-Seq.genomic.A.hg38 C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 565e7e03-2229-40cd-86e6-8cabc225bd21.rna_seq.genomic.gdc_realn.bam 9715431444 BAM genomic harmonized CPTAC3 4903af37-1c1e-419b-bc9b-c27c2da0e8c3 47a85ade5c82cc9a4b6bd8c69dd37032 { 'aliquot_tag': 'ALQ_c5d00475', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02285.RNA-Seq.genomic.T.hg38 C3N-02285 LSCC RNA-Seq tumor CPT0126740009 6092fdeb-bdf7-49c0-b6e2-fcb5244df186.rna_seq.genomic.gdc_realn.bam 7947460672 BAM genomic harmonized CPTAC3 807c6d4b-8a5f-480f-a0c4-760f8b768d11 fbdd7c0f467799611e8ab7a7f61cbad9 { 'aliquot_tag': 'ALQ_bf105715', 'gdc_sample_type': 'Primary Tumor' } -C3N-02285.RNA-Seq.R1_L007.A C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4430878992 FASTQ R1_L007 unaligned CPTAC3 2042bad1-37ed-41c7-892e-5a49fb97a23a 93d176b6c43274618fb6d5d2e25132d9 { 'aliquot_tag': 'ALQ_c5d00475', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02285.RNA-Seq.R1_L008.T C3N-02285 LSCC RNA-Seq tumor CPT0126740009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R1_001.fastq.gz 3403190252 FASTQ R1_L008 unaligned CPTAC3 7a27f21d-0359-4af1-9224-c31b612241b4 4ea0b78523be563070758b630aa28e5c { 'aliquot_tag': 'ALQ_bf105715', 'gdc_sample_type': 'Primary Tumor' } -C3N-02285.RNA-Seq.R2_L007.A C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4534947376 FASTQ R2_L007 unaligned CPTAC3 20060cbc-b291-43b9-b1a2-179d33db94df 77811c65ac976ba51f625f409d7287be { 'aliquot_tag': 'ALQ_c5d00475', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02285.RNA-Seq.R2_L008.T C3N-02285 LSCC RNA-Seq tumor CPT0126740009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R2_001.fastq.gz 3623342067 FASTQ R2_L008 unaligned CPTAC3 5915e9f4-006f-4912-b6e2-681270b493df 753389079f6550a33edfad7a4da0210a { 'aliquot_tag': 'ALQ_bf105715', 'gdc_sample_type': 'Primary Tumor' } +C3N-02285.RNA-Seq.genomic.T.hg38 C3N-02285 LSCC RNA-Seq tumor CPT0126740009 6092fdeb-bdf7-49c0-b6e2-fcb5244df186.rna_seq.genomic.gdc_realn.bam 7947460672 BAM genomic harmonized CPTAC3 f3a3a0b0-9af0-48fb-9b1e-5b4b18351764 fbdd7c0f467799611e8ab7a7f61cbad9 { 'aliquot_tag': 'ALQ_bf105715', 'gdc_sample_type': 'Primary Tumor' } +C3N-02285.RNA-Seq.R1_L007.A C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L007_R1_001.fastq.gz 4430878992 FASTQ R1_L007 unaligned CPTAC3 2042bad1-37ed-41c7-892e-5a49fb97a23a 93d176b6c43274618fb6d5d2e25132d9 { 'aliquot_tag': 'ALQ_c5d00475', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02285.RNA-Seq.R1_L008.T C3N-02285 LSCC RNA-Seq tumor CPT0126740009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R1_001.fastq.gz 3403190252 FASTQ R1_L008 unaligned CPTAC3 7a27f21d-0359-4af1-9224-c31b612241b4 4ea0b78523be563070758b630aa28e5c { 'aliquot_tag': 'ALQ_bf105715', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02285.RNA-Seq.R2_L007.A C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 180926_UNC31-K00269_0155_AHWN7WBBXX_GTGGCC_S1_L007_R2_001.fastq.gz 4534947376 FASTQ R2_L007 unaligned CPTAC3 20060cbc-b291-43b9-b1a2-179d33db94df 77811c65ac976ba51f625f409d7287be { 'aliquot_tag': 'ALQ_c5d00475', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02285.RNA-Seq.R2_L008.T C3N-02285 LSCC RNA-Seq tumor CPT0126740009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTCAA_S29_L008_R2_001.fastq.gz 3623342067 FASTQ R2_L008 unaligned CPTAC3 5915e9f4-006f-4912-b6e2-681270b493df 753389079f6550a33edfad7a4da0210a { 'aliquot_tag': 'ALQ_bf105715', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02285.RNA-Seq.transcriptome.A.hg38 C3N-02285 LSCC RNA-Seq tissue_normal CPT0126760009 565e7e03-2229-40cd-86e6-8cabc225bd21.rna_seq.transcriptome.gdc_realn.bam 12030406071 BAM transcriptome harmonized CPTAC3 6ae96d76-d173-4d93-b082-e347d139f6b8 331335fa9c6005205c3ab02ab0ba4011 { 'aliquot_tag': 'ALQ_c5d00475', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02285.RNA-Seq.transcriptome.T.hg38 C3N-02285 LSCC RNA-Seq tumor CPT0126740009 6092fdeb-bdf7-49c0-b6e2-fcb5244df186.rna_seq.transcriptome.gdc_realn.bam 9064346983 BAM transcriptome harmonized CPTAC3 eb3cf5ce-55f6-43e0-b9e6-e3cacc9059d2 b6effc42607139bccd53e57902e31f73 { 'aliquot_tag': 'ALQ_bf105715', 'gdc_sample_type': 'Primary Tumor' } C3N-02285.WGS.A C3N-02285 LSCC WGS tissue_normal CPT0126760006 CPT0126760006.WholeGenome.RP-1303.bam 65918909815 BAM aligned CPTAC3 864d3bd9-3a89-44e5-a4b1-dac412323a21 b022018fbd46f308be57d939eb0657c9 { 'aliquot_tag': 'ALQ_556f19e4', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -30549,11 +32657,11 @@ C3N-02286.MethArray.Green.T C3N-02286 GBM Methylation Array tumor CPT0244760006 C3N-02286.MethArray.Red.T C3N-02286 GBM Methylation Array tumor CPT0244760006 204367490066_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 8fd80be3-698a-4666-ae92-d05ef75f53e3 0d34990fc116078631487b743076d295 { 'aliquot_tag': 'ALQ_3d123d8f', 'gdc_sample_type': 'Primary Tumor' } C3N-02286.miRNA-Seq.T C3N-02286 GBM miRNA-Seq tumor CPT0244760012 200513_UNC31-K00269_0278_BHH7Y7BBXY_CTATAC_S39_L008_R1_001.unaln.bam 194637823 BAM unaligned CPTAC3 ae5b5cc2-88f4-4583-966d-adb6dea6c265 325c6af91a3cebd3a17591305f10d080 { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor' } C3N-02286.miRNA-Seq.T.hg38 C3N-02286 GBM miRNA-Seq tumor CPT0244760012 89e53779-3952-48e8-96f5-c8cf72c56aef_mirnaseq_gdc_realn.bam 215338304 BAM harmonized CPTAC3 159b1364-2268-4c9e-81b2-82fcd8cd2b33 93cbddfcba5c9007fd381dec7ed2c240 { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02286.RNA-Seq.chimeric.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 38191a5e-e87a-484f-930e-bd437c06efb4.rna_seq.chimeric.gdc_realn.bam 29717036 BAM chimeric harmonized CPTAC3 c3aa5fe6-e9f5-4ca9-b6bb-5deed2727a7c 2b4ce10bbf3868d029d56216ff88f6da { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02286.RNA-Seq.genomic.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 38191a5e-e87a-484f-930e-bd437c06efb4.rna_seq.genomic.gdc_realn.bam 7540226795 BAM genomic harmonized CPTAC3 be8c0783-2239-42d1-8895-f7497e17c9dd c9b4ace7e27b918b822e81c056dfd48a { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02286.RNA-Seq.R1_L008.T C3N-02286 GBM RNA-Seq tumor CPT0244760012 200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R1_001.fastq.gz 3685174247 FASTQ R1_L008 unaligned CPTAC3 02665bb1-0f40-4959-9017-1d20d7a15ced f7102e43015cf6a94651d4512fef2730 { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02286.RNA-Seq.R2_L008.T C3N-02286 GBM RNA-Seq tumor CPT0244760012 200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R2_001.fastq.gz 3994468657 FASTQ R2_L008 unaligned CPTAC3 80bdd1ba-fe88-4d31-b371-bd54b3859722 25ea3c33b8850b377fba3165b009e7bd { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02286.RNA-Seq.transcriptome.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 38191a5e-e87a-484f-930e-bd437c06efb4.rna_seq.transcriptome.gdc_realn.bam 8091503154 BAM transcriptome harmonized CPTAC3 3b650395-81e9-4a12-a3b3-2325b8753ccd 018aa57a6eac771630d25e28a8bc02e3 { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02286.RNA-Seq.chimeric.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 ccd4322c-4b9b-49a9-8c1f-810d0e7c2165.rna_seq.chimeric.gdc_realn.bam 29702691 BAM chimeric harmonized CPTAC3 68190671-6a04-4391-a854-f810353e7ae7 37d6753015dd9be9af25c774b41d01ed { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02286.RNA-Seq.genomic.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 ccd4322c-4b9b-49a9-8c1f-810d0e7c2165.rna_seq.genomic.gdc_realn.bam 7540862865 BAM genomic harmonized CPTAC3 b33378e7-69ac-44fa-bacc-98773c52aabf 828b5c10961bf09e944c8aa71ef7c3bb { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02286.RNA-Seq.R1_L008.T C3N-02286 GBM RNA-Seq tumor CPT0244760012 200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R1_001.fastq.gz 3685174247 FASTQ R1_L008 unaligned CPTAC3 02665bb1-0f40-4959-9017-1d20d7a15ced f7102e43015cf6a94651d4512fef2730 { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02286.RNA-Seq.R2_L008.T C3N-02286 GBM RNA-Seq tumor CPT0244760012 200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R2_001.fastq.gz 3994468657 FASTQ R2_L008 unaligned CPTAC3 80bdd1ba-fe88-4d31-b371-bd54b3859722 25ea3c33b8850b377fba3165b009e7bd { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02286.RNA-Seq.transcriptome.T.hg38 C3N-02286 GBM RNA-Seq tumor CPT0244760012 ccd4322c-4b9b-49a9-8c1f-810d0e7c2165.rna_seq.transcriptome.gdc_realn.bam 9388570427 BAM transcriptome harmonized CPTAC3 fd190401-c359-4f1e-a6af-fc01b27c63cc c4cf1b147675125b6de4e47280253b99 { 'aliquot_tag': 'ALQ_2364c8d7', 'gdc_sample_type': 'Primary Tumor' } C3N-02286.WGS.N C3N-02286 GBM WGS blood_normal CPT0244820002 CPT0244820002.WholeGenome.RP-2158.bam 25059198039 BAM aligned CPTAC3 207b0c66-831f-4fc7-9714-7b9dbc6d286c c51cbf0a58951b20781e066b7f7120f4 { 'aliquot_tag': 'ALQ_3ea9ed83', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02286.WGS.N.hg38 C3N-02286 GBM WGS blood_normal CPT0244820002 ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wgs_gdc_realn.bam 77117048003 BAM harmonized CPTAC3 049469de-687c-4e38-bddb-a16aabc783b1 f2731f07a3012f2cd71dda55bcaa1e69 { 'aliquot_tag': 'ALQ_3ea9ed83', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02286.WGS.T C3N-02286 GBM WGS tumor CPT0244760006 CPT0244760006.WholeGenome.RP-2158.bam 27211004051 BAM aligned CPTAC3 5d4e1b94-0bc1-483b-8d13-f163e3aa239c 6e9f41309d1adfc35c4c07d9a3aee9f0 { 'aliquot_tag': 'ALQ_3d123d8f', 'gdc_sample_type': 'Primary Tumor' } @@ -30572,12 +32680,12 @@ C3N-02288.miRNA-Seq.T C3N-02288 LSCC miRNA-Seq tumor CPT0186130009 181219_UNC31- C3N-02288.miRNA-Seq.T.hg38 C3N-02288 LSCC miRNA-Seq tumor CPT0186130009 0e6cf7d4-670b-4a8b-a394-eab87460fb1e_mirnaseq_gdc_realn.bam 285139256 BAM harmonized CPTAC3 efa7533d-a060-4811-aea9-98de1a2d65b5 0ccdaed971b9f81e27ac4513af579fd5 { 'aliquot_tag': 'ALQ_4aa974d0', 'gdc_sample_type': 'Primary Tumor' } C3N-02288.RNA-Seq.chimeric.A.hg38 C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 f3b928f1-fe62-4790-ba3f-2c866f045aeb.rna_seq.chimeric.gdc_realn.bam 171861783 BAM chimeric harmonized CPTAC3 9919a659-5f8f-4989-8a52-fdb0ab486d46 cd026fda6a9515ad8e5748cb6482f4af { 'aliquot_tag': 'ALQ_6836b551', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02288.RNA-Seq.chimeric.T.hg38 C3N-02288 LSCC RNA-Seq tumor CPT0186130009 fa8b73b6-9b00-4d4f-a283-5f143492881c.rna_seq.chimeric.gdc_realn.bam 194002847 BAM chimeric harmonized CPTAC3 d9fc2e49-0229-4ba4-9bdb-727efc5e2748 1429126908b2cb5a7995ad42c88656a8 { 'aliquot_tag': 'ALQ_4aa974d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02288.RNA-Seq.genomic.A.hg38 C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 f3b928f1-fe62-4790-ba3f-2c866f045aeb.rna_seq.genomic.gdc_realn.bam 7793449514 BAM genomic harmonized CPTAC3 62078bc7-bd92-48e4-a6f4-bf19fcfc6e92 dd55ca2a7537301913261e76d9df0550 { 'aliquot_tag': 'ALQ_6836b551', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02288.RNA-Seq.genomic.T.hg38 C3N-02288 LSCC RNA-Seq tumor CPT0186130009 fa8b73b6-9b00-4d4f-a283-5f143492881c.rna_seq.genomic.gdc_realn.bam 8988142053 BAM genomic harmonized CPTAC3 94e35a98-aa95-4176-8bb5-a1b6a9f445c2 a463f78dc476d8b37106faf160c67cdb { 'aliquot_tag': 'ALQ_4aa974d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02288.RNA-Seq.R1_L003.T C3N-02288 LSCC RNA-Seq tumor CPT0186130009 181002_UNC31-K00269_0156_AHWN3HBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4108950066 FASTQ R1_L003 unaligned CPTAC3 39642b1f-d674-4058-b22d-5448545cbd46 b00c3056566ca04f211815dcf75c1efb { 'aliquot_tag': 'ALQ_4aa974d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02288.RNA-Seq.R1_L007.A C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L007_R1_001.fastq.gz 3836916330 FASTQ R1_L007 unaligned CPTAC3 6cbd08c2-d1b5-4b79-bbdd-123cd1403623 34fe8e405ac19137568836f9b3d5b723 { 'aliquot_tag': 'ALQ_6836b551', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02288.RNA-Seq.R2_L003.T C3N-02288 LSCC RNA-Seq tumor CPT0186130009 181002_UNC31-K00269_0156_AHWN3HBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 4354401745 FASTQ R2_L003 unaligned CPTAC3 86afbf0b-e1b7-486d-b31b-429499453873 2711881c05a79ba40f8ed2454feef2b6 { 'aliquot_tag': 'ALQ_4aa974d0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02288.RNA-Seq.R2_L007.A C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L007_R2_001.fastq.gz 3804114781 FASTQ R2_L007 unaligned CPTAC3 832340aa-ac2d-4625-aeb4-46ef85ee706f 00cd0a5674461a319d8b745fb4d7b987 { 'aliquot_tag': 'ALQ_6836b551', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02288.RNA-Seq.genomic.A.hg38 C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 f3b928f1-fe62-4790-ba3f-2c866f045aeb.rna_seq.genomic.gdc_realn.bam 7793449514 BAM genomic harmonized CPTAC3 0840a2ea-971d-4f0c-862b-635dba0dc411 dd55ca2a7537301913261e76d9df0550 { 'aliquot_tag': 'ALQ_6836b551', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02288.RNA-Seq.genomic.T.hg38 C3N-02288 LSCC RNA-Seq tumor CPT0186130009 fa8b73b6-9b00-4d4f-a283-5f143492881c.rna_seq.genomic.gdc_realn.bam 8988142053 BAM genomic harmonized CPTAC3 4f095c02-6af2-4c31-aba9-346f6f7951d3 a463f78dc476d8b37106faf160c67cdb { 'aliquot_tag': 'ALQ_4aa974d0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02288.RNA-Seq.R1_L003.T C3N-02288 LSCC RNA-Seq tumor CPT0186130009 181002_UNC31-K00269_0156_AHWN3HBBXX_TAGCTT_S11_L003_R1_001.fastq.gz 4108950066 FASTQ R1_L003 unaligned CPTAC3 39642b1f-d674-4058-b22d-5448545cbd46 b00c3056566ca04f211815dcf75c1efb { 'aliquot_tag': 'ALQ_4aa974d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02288.RNA-Seq.R1_L007.A C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L007_R1_001.fastq.gz 3836916330 FASTQ R1_L007 unaligned CPTAC3 6cbd08c2-d1b5-4b79-bbdd-123cd1403623 34fe8e405ac19137568836f9b3d5b723 { 'aliquot_tag': 'ALQ_6836b551', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02288.RNA-Seq.R2_L003.T C3N-02288 LSCC RNA-Seq tumor CPT0186130009 181002_UNC31-K00269_0156_AHWN3HBBXX_TAGCTT_S11_L003_R2_001.fastq.gz 4354401745 FASTQ R2_L003 unaligned CPTAC3 86afbf0b-e1b7-486d-b31b-429499453873 2711881c05a79ba40f8ed2454feef2b6 { 'aliquot_tag': 'ALQ_4aa974d0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02288.RNA-Seq.R2_L007.A C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L007_R2_001.fastq.gz 3804114781 FASTQ R2_L007 unaligned CPTAC3 832340aa-ac2d-4625-aeb4-46ef85ee706f 00cd0a5674461a319d8b745fb4d7b987 { 'aliquot_tag': 'ALQ_6836b551', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-02288.RNA-Seq.transcriptome.A.hg38 C3N-02288 LSCC RNA-Seq tissue_normal CPT0186140006 f3b928f1-fe62-4790-ba3f-2c866f045aeb.rna_seq.transcriptome.gdc_realn.bam 10874547104 BAM transcriptome harmonized CPTAC3 0fb2cd9b-d2af-47ff-8ce5-41887d748bd1 256e97b8861dc2c16c95de649ab404c8 { 'aliquot_tag': 'ALQ_6836b551', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02288.RNA-Seq.transcriptome.T.hg38 C3N-02288 LSCC RNA-Seq tumor CPT0186130009 fa8b73b6-9b00-4d4f-a283-5f143492881c.rna_seq.transcriptome.gdc_realn.bam 10252716605 BAM transcriptome harmonized CPTAC3 71f384f7-540f-4926-a36d-acd2f6ae8c64 c8b55d981c96bccaa573d6822ab7edcc { 'aliquot_tag': 'ALQ_4aa974d0', 'gdc_sample_type': 'Primary Tumor' } C3N-02288.WGS.A C3N-02288 LSCC WGS tissue_normal CPT0186140009 CPT0186140009.WholeGenome.RP-1303.bam 65549342706 BAM aligned CPTAC3 a9d473b6-b610-4a1e-94d8-e14d5cd1c13f b73c198599e6ca032dbc1efa3baea71a { 'aliquot_tag': 'ALQ_f889a8c0', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -30603,11 +32711,11 @@ C3N-02289.miRNA-Seq.T.hg38 C3N-02289 LSCC miRNA-Seq tumor CPT0186180009 7c15a804 C3N-02289.RNA-Seq.chimeric.A.hg38 C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 ad933333-c2db-45eb-a757-12c140a13b85.rna_seq.chimeric.gdc_realn.bam 153690925 BAM chimeric harmonized CPTAC3 f1bc418d-c9e8-4178-8126-2417f5d752b5 46741f63b9f5299de025e84073b4b6b5 { 'aliquot_tag': 'ALQ_2642488f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02289.RNA-Seq.chimeric.T.hg38 C3N-02289 LSCC RNA-Seq tumor CPT0186180009 cd2282ba-4281-4d7f-93ff-dafcd97d8fa6.rna_seq.chimeric.gdc_realn.bam 134169252 BAM chimeric harmonized CPTAC3 2d290c00-fed2-4930-8545-2fba2f3d6040 94ec1f7cbf0fc2e0cfab66b55a1c963b { 'aliquot_tag': 'ALQ_3d7945c1', 'gdc_sample_type': 'Primary Tumor' } C3N-02289.RNA-Seq.genomic.A.hg38 C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 ad933333-c2db-45eb-a757-12c140a13b85.rna_seq.genomic.gdc_realn.bam 10411293073 BAM genomic harmonized CPTAC3 15d7f68f-5227-4cd4-b19f-4ef6dda9c640 7a03af8e49b0a37f8d70807765abd957 { 'aliquot_tag': 'ALQ_2642488f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02289.RNA-Seq.genomic.T.hg38 C3N-02289 LSCC RNA-Seq tumor CPT0186180009 cd2282ba-4281-4d7f-93ff-dafcd97d8fa6.rna_seq.genomic.gdc_realn.bam 8242419388 BAM genomic harmonized CPTAC3 5c7970bc-2c28-4aea-9477-e87614cf75f9 2f0c4f4b4f0894b35cb4fcfde260484f { 'aliquot_tag': 'ALQ_3d7945c1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02289.RNA-Seq.R1_L003.T C3N-02289 LSCC RNA-Seq tumor CPT0186180009 181002_UNC31-K00269_0156_AHWN3HBBXX_GGCTAC_S9_L003_R1_001.fastq.gz 3595918954 FASTQ R1_L003 unaligned CPTAC3 571b4286-222c-4875-811a-e8279e5795c9 4e2402b2ba932f6900bd96befa277789 { 'aliquot_tag': 'ALQ_3d7945c1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02289.RNA-Seq.R1_L007.A C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L007_R1_001.fastq.gz 4566801454 FASTQ R1_L007 unaligned CPTAC3 b569607b-6b14-4fdf-922f-54ffd96052d8 d1180359a760e31fa2fb73f60c9a4b7a { 'aliquot_tag': 'ALQ_2642488f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02289.RNA-Seq.R2_L003.T C3N-02289 LSCC RNA-Seq tumor CPT0186180009 181002_UNC31-K00269_0156_AHWN3HBBXX_GGCTAC_S9_L003_R2_001.fastq.gz 3936810574 FASTQ R2_L003 unaligned CPTAC3 61105949-6c4a-45ca-ab05-87f6e4f36f7f e7af0e6869fc0d2f3f01977de850fdd2 { 'aliquot_tag': 'ALQ_3d7945c1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02289.RNA-Seq.R2_L007.A C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L007_R2_001.fastq.gz 4647899124 FASTQ R2_L007 unaligned CPTAC3 5365e6d1-d92c-4836-9fe8-6bafc8e4783a 53ca5bb70719203944f89e93694227e5 { 'aliquot_tag': 'ALQ_2642488f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02289.RNA-Seq.genomic.T.hg38 C3N-02289 LSCC RNA-Seq tumor CPT0186180009 cd2282ba-4281-4d7f-93ff-dafcd97d8fa6.rna_seq.genomic.gdc_realn.bam 8242419388 BAM genomic harmonized CPTAC3 df8f520a-ceda-43cb-aa92-076bc9aac573 2f0c4f4b4f0894b35cb4fcfde260484f { 'aliquot_tag': 'ALQ_3d7945c1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02289.RNA-Seq.R1_L003.T C3N-02289 LSCC RNA-Seq tumor CPT0186180009 181002_UNC31-K00269_0156_AHWN3HBBXX_GGCTAC_S9_L003_R1_001.fastq.gz 3595918954 FASTQ R1_L003 unaligned CPTAC3 571b4286-222c-4875-811a-e8279e5795c9 4e2402b2ba932f6900bd96befa277789 { 'aliquot_tag': 'ALQ_3d7945c1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02289.RNA-Seq.R1_L007.A C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L007_R1_001.fastq.gz 4566801454 FASTQ R1_L007 unaligned CPTAC3 b569607b-6b14-4fdf-922f-54ffd96052d8 d1180359a760e31fa2fb73f60c9a4b7a { 'aliquot_tag': 'ALQ_2642488f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02289.RNA-Seq.R2_L003.T C3N-02289 LSCC RNA-Seq tumor CPT0186180009 181002_UNC31-K00269_0156_AHWN3HBBXX_GGCTAC_S9_L003_R2_001.fastq.gz 3936810574 FASTQ R2_L003 unaligned CPTAC3 61105949-6c4a-45ca-ab05-87f6e4f36f7f e7af0e6869fc0d2f3f01977de850fdd2 { 'aliquot_tag': 'ALQ_3d7945c1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02289.RNA-Seq.R2_L007.A C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L007_R2_001.fastq.gz 4647899124 FASTQ R2_L007 unaligned CPTAC3 5365e6d1-d92c-4836-9fe8-6bafc8e4783a 53ca5bb70719203944f89e93694227e5 { 'aliquot_tag': 'ALQ_2642488f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-02289.RNA-Seq.transcriptome.A.hg38 C3N-02289 LSCC RNA-Seq tissue_normal CPT0186210006 ad933333-c2db-45eb-a757-12c140a13b85.rna_seq.transcriptome.gdc_realn.bam 13612297468 BAM transcriptome harmonized CPTAC3 d77c709b-f84a-4d0f-8f1b-7a84cd2be74e 86a3859bdb96f9529709b7d29e97bbe6 { 'aliquot_tag': 'ALQ_2642488f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02289.RNA-Seq.transcriptome.T.hg38 C3N-02289 LSCC RNA-Seq tumor CPT0186180009 cd2282ba-4281-4d7f-93ff-dafcd97d8fa6.rna_seq.transcriptome.gdc_realn.bam 10734979923 BAM transcriptome harmonized CPTAC3 e6067bed-9d79-490f-80cb-df6261e2c764 1a868ac9c8e73adbf33799488de3963b { 'aliquot_tag': 'ALQ_3d7945c1', 'gdc_sample_type': 'Primary Tumor' } C3N-02289.WGS.A C3N-02289 LSCC WGS tissue_normal CPT0186210009 CPT0186210009.WholeGenome.RP-1303.bam 61184896525 BAM aligned CPTAC3 fa905caa-3731-4985-aeb5-5ffe5c52b6ca 4db84d811f513ed36be929f5d434a28d { 'aliquot_tag': 'ALQ_b6fd551e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -30630,16 +32738,16 @@ C3N-02290.miRNA-Seq.A C3N-02290 LUAD miRNA-Seq tissue_normal CPT0187030007 19013 C3N-02290.miRNA-Seq.A.hg38 C3N-02290 LUAD miRNA-Seq tissue_normal CPT0187030007 b7a1dfa0-ffc2-4a86-9e8b-85058bc7488d_mirnaseq_gdc_realn.bam 276156920 BAM harmonized CPTAC3 f1370279-eb12-4f6e-a5af-2e75a8b736e0 55bd2ea06bdd2593a81a9005f863f72f { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02290.miRNA-Seq.T C3N-02290 LUAD miRNA-Seq tumor CPT0187010009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATCACG_S2_L008_R1_001.unaln.bam 141555039 BAM unaligned CPTAC3 4d368481-cbcd-47f8-88fb-a98500c2fa59 99d3a54dd4ee33d0945d0e1c9fc301e2 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor' } C3N-02290.miRNA-Seq.T.hg38 C3N-02290 LUAD miRNA-Seq tumor CPT0187010009 20d5558b-3f69-4bf8-8ba4-dec0e365c778_mirnaseq_gdc_realn.bam 153949128 BAM harmonized CPTAC3 5dc5dc46-a129-40ff-85f7-4b21d4df4e65 0167c3bcb52c02382db42326118ab591 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02290.RNA-Seq.chimeric.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 24281180-e768-4014-9b7b-3871214b85bd.rna_seq.chimeric.gdc_realn.bam 61146262 BAM chimeric harmonized CPTAC3 1c4e0fd9-e539-4921-bcb3-5b1ae12abf82 4b1daa95b02cdc0848b38eed0432e627 { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02290.RNA-Seq.chimeric.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8d3bc1a8-555e-4622-a06b-cde04f24d41c.rna_seq.chimeric.gdc_realn.bam 319431104 BAM chimeric harmonized CPTAC3 ea50d0f5-97cf-4fe8-b33d-a7757691ee4a cf67464d82041d888bf8c9a3483f8231 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02290.RNA-Seq.genomic.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 24281180-e768-4014-9b7b-3871214b85bd.rna_seq.genomic.gdc_realn.bam 9965935930 BAM genomic harmonized CPTAC3 ad0026b5-daf8-4801-9454-3c2e1bccf199 b44dee4ce3b75746dd3c2b2a3dd7b417 { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02290.RNA-Seq.genomic.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8d3bc1a8-555e-4622-a06b-cde04f24d41c.rna_seq.genomic.gdc_realn.bam 10315801459 BAM genomic harmonized CPTAC3 392dbecd-ba6d-42c9-96b4-666f8bf0d5f9 c18412ea5c1298c674dd570b086b1a3e { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02290.RNA-Seq.R1_L005.A C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 190201_UNC31-K00269_0190_BH3LFKBBXY_CCGTCC_S16_L005_R1_001.fastq.gz 4595508039 FASTQ R1_L005 unaligned CPTAC3 e3a96a81-b8e8-4b23-ad10-88cea613702b 981263d3e01edbc1467b7d8e58c5ff59 { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02290.RNA-Seq.R1_L007.T C3N-02290 LUAD RNA-Seq tumor CPT0187010009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R1_001.fastq.gz 4690579368 FASTQ R1_L007 unaligned CPTAC3 39d8f0b5-a3db-4a6b-b645-60b28ecdc6b9 7dbf9403dd76cf4b94fa644785f10696 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02290.RNA-Seq.R2_L005.A C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 190201_UNC31-K00269_0190_BH3LFKBBXY_CCGTCC_S16_L005_R2_001.fastq.gz 4678562004 FASTQ R2_L005 unaligned CPTAC3 1a160126-dc86-454c-836f-0a8062bb21ea 1eecce4db886f19b3dad5cea5a2c40e0 { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02290.RNA-Seq.R2_L007.T C3N-02290 LUAD RNA-Seq tumor CPT0187010009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R2_001.fastq.gz 4522792261 FASTQ R2_L007 unaligned CPTAC3 ac88605a-47e9-408e-aca0-7ee694936066 dfb99106cf9c02e003a4dc34f2f10303 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02290.RNA-Seq.transcriptome.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 24281180-e768-4014-9b7b-3871214b85bd.rna_seq.transcriptome.gdc_realn.bam 10490852573 BAM transcriptome harmonized CPTAC3 733bf13c-e3e6-44c0-9358-f6d53191b9d6 3bd1424c669f6e6735ab38d7db202664 { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02290.RNA-Seq.transcriptome.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8d3bc1a8-555e-4622-a06b-cde04f24d41c.rna_seq.transcriptome.gdc_realn.bam 10353001934 BAM transcriptome harmonized CPTAC3 cb5896f9-2be6-4ec1-8596-92b80e38c8bb 513be637eef27767f90a043b373993c8 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02290.RNA-Seq.chimeric.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 9ce43f30-9609-47b1-ab04-850ea0d51fbf.rna_seq.chimeric.gdc_realn.bam 61119857 BAM chimeric harmonized CPTAC3 255a157f-2597-43b3-b4d1-8dd4003263b6 9bde9a3aadd2447e782927736d3c071f { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02290.RNA-Seq.chimeric.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8477c831-1389-4ce6-88d7-199c9d7e5fd4.rna_seq.chimeric.gdc_realn.bam 319390924 BAM chimeric harmonized CPTAC3 f75ed3a2-d693-40e4-8d9f-98607ffa0e8e 7f7caa75df91de98a36f965ecf01f071 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02290.RNA-Seq.genomic.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 9ce43f30-9609-47b1-ab04-850ea0d51fbf.rna_seq.genomic.gdc_realn.bam 9967250337 BAM genomic harmonized CPTAC3 549a1f70-7a5e-4856-b408-10d0c42f4a1e 456ccd387b114b2e2cf9130d1294f4f8 { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02290.RNA-Seq.genomic.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8477c831-1389-4ce6-88d7-199c9d7e5fd4.rna_seq.genomic.gdc_realn.bam 10317323419 BAM genomic harmonized CPTAC3 fccd315f-0ca6-48af-bc29-f1084ef81178 111af0e8e6e7bff92ec6a24823df6f86 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02290.RNA-Seq.R1_L005.A C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 190201_UNC31-K00269_0190_BH3LFKBBXY_CCGTCC_S16_L005_R1_001.fastq.gz 4595508039 FASTQ R1_L005 unaligned CPTAC3 e3a96a81-b8e8-4b23-ad10-88cea613702b 981263d3e01edbc1467b7d8e58c5ff59 { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02290.RNA-Seq.R1_L007.T C3N-02290 LUAD RNA-Seq tumor CPT0187010009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R1_001.fastq.gz 4690579368 FASTQ R1_L007 unaligned CPTAC3 39d8f0b5-a3db-4a6b-b645-60b28ecdc6b9 7dbf9403dd76cf4b94fa644785f10696 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02290.RNA-Seq.R2_L005.A C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 190201_UNC31-K00269_0190_BH3LFKBBXY_CCGTCC_S16_L005_R2_001.fastq.gz 4678562004 FASTQ R2_L005 unaligned CPTAC3 1a160126-dc86-454c-836f-0a8062bb21ea 1eecce4db886f19b3dad5cea5a2c40e0 { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02290.RNA-Seq.R2_L007.T C3N-02290 LUAD RNA-Seq tumor CPT0187010009 190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R2_001.fastq.gz 4522792261 FASTQ R2_L007 unaligned CPTAC3 ac88605a-47e9-408e-aca0-7ee694936066 dfb99106cf9c02e003a4dc34f2f10303 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02290.RNA-Seq.transcriptome.A.hg38 C3N-02290 LUAD RNA-Seq tissue_normal CPT0187030007 9ce43f30-9609-47b1-ab04-850ea0d51fbf.rna_seq.transcriptome.gdc_realn.bam 11848976371 BAM transcriptome harmonized CPTAC3 c2105d71-e9b1-45b9-a380-ee674ff7078c e5eed3fbd15c73fe6e7d6d681c79b880 { 'aliquot_tag': 'ALQ_c03a81c6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02290.RNA-Seq.transcriptome.T.hg38 C3N-02290 LUAD RNA-Seq tumor CPT0187010009 8477c831-1389-4ce6-88d7-199c9d7e5fd4.rna_seq.transcriptome.gdc_realn.bam 11680336882 BAM transcriptome harmonized CPTAC3 b602f2f7-7e81-4041-a75e-325dd5ac76b5 d9dfa5b59c02addf1dd143869f24ddf4 { 'aliquot_tag': 'ALQ_5d42ffa1', 'gdc_sample_type': 'Primary Tumor' } C3N-02290.WGS.N C3N-02290 LUAD WGS blood_normal CPT0187070002 CPT0187070002.WholeGenome.RP-1303.bam 127695492391 BAM aligned CPTAC3 6c5725b5-ccdd-4e10-b320-52f0063105d7 8f3352f176ec125617f8308596ba83b6 { 'aliquot_tag': 'ALQ_45d0d389', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02290.WGS.N.hg38 C3N-02290 LUAD WGS blood_normal CPT0187070002 73ca30a6-3d6a-4c8b-96e5-991564146108_wgs_gdc_realn.bam 184225340399 BAM harmonized CPTAC3 02edb76d-23b0-42b7-a452-b92739131516 e2763438d4d04c73f2d36a649b9cc1eb { 'aliquot_tag': 'ALQ_45d0d389', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02290.WGS.T C3N-02290 LUAD WGS tumor CPT0187010006 CPT0187010006.WholeGenome.RP-1303.bam 87571459270 BAM aligned CPTAC3 ed95c59c-0f3c-4484-bb25-5c0352e6e1a9 af6a1dd0de7c6efa17dcadafc95d9f53 { 'aliquot_tag': 'ALQ_cdfde230', 'gdc_sample_type': 'Primary Tumor' } @@ -30657,9 +32765,9 @@ C3N-02295.MethArray.Red.T C3N-02295 PDA Methylation Array tumor CPT0187550007 20 C3N-02295.miRNA-Seq.T C3N-02295 PDA miRNA-Seq tumor CPT0187550010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGGCA_S48_L006_R1_001.unaln.bam 250372141 BAM unaligned CPTAC3 b3e360a6-1aef-455d-9f51-ac8bcafbd0b1 0829c1552006ba77c78703a90c352038 { 'aliquot_tag': 'ALQ_98c84137', 'gdc_sample_type': 'Primary Tumor' } C3N-02295.miRNA-Seq.T.hg38 C3N-02295 PDA miRNA-Seq tumor CPT0187550010 7888ceea-bbbc-42f7-8272-fc00d123fe3b_mirnaseq_gdc_realn.bam 286565023 BAM harmonized CPTAC3 567d9a17-9cb7-4221-9ca8-164533ddb228 f3795d2ccc8690647b97c6b5792d6a8a { 'aliquot_tag': 'ALQ_98c84137', 'gdc_sample_type': 'Primary Tumor' } C3N-02295.RNA-Seq.chimeric.T.hg38 C3N-02295 PDA RNA-Seq tumor CPT0187550010 75c585cd-05ce-442d-b4b4-4f643681dd1c.rna_seq.chimeric.gdc_realn.bam 153719094 BAM chimeric harmonized CPTAC3 f9c05a89-e6a5-4cba-a302-4efdb9794f62 1f22c35892f4e2cf85c1eec62d4bf5cf { 'aliquot_tag': 'ALQ_98c84137', 'gdc_sample_type': 'Primary Tumor' } -C3N-02295.RNA-Seq.genomic.T.hg38 C3N-02295 PDA RNA-Seq tumor CPT0187550010 75c585cd-05ce-442d-b4b4-4f643681dd1c.rna_seq.genomic.gdc_realn.bam 9069892908 BAM genomic harmonized CPTAC3 95dc96cc-cbe1-4626-adaf-0707ad9ea761 07d9a3f90bd7e5d2a5cc4ef2c07b691e { 'aliquot_tag': 'ALQ_98c84137', 'gdc_sample_type': 'Primary Tumor' } -C3N-02295.RNA-Seq.R1_L006.T C3N-02295 PDA RNA-Seq tumor CPT0187550010 190725_UNC32-K00270_0194_AH7HHFBBXY_ACCTTGGC-GGCCTCAT_S24_L006_R1_001.fastq.gz 3742479935 FASTQ R1_L006 unaligned CPTAC3 14b4b5bd-ba97-4a24-b0d7-0df326984d51 98d16d774f91a9b7de5ad3eb3902b677 { 'aliquot_tag': 'ALQ_98c84137', 'gdc_sample_type': 'Primary Tumor' } -C3N-02295.RNA-Seq.R2_L006.T C3N-02295 PDA RNA-Seq tumor CPT0187550010 190725_UNC32-K00270_0194_AH7HHFBBXY_ACCTTGGC-GGCCTCAT_S24_L006_R2_001.fastq.gz 3883901902 FASTQ R2_L006 unaligned CPTAC3 2511ef1a-6268-4f0f-aa35-53e07ae3ec43 8e9a40a7b3f69c7acece27ec06f197cf { 'aliquot_tag': 'ALQ_98c84137', 'gdc_sample_type': 'Primary Tumor' } +C3N-02295.RNA-Seq.genomic.T.hg38 C3N-02295 PDA RNA-Seq tumor CPT0187550010 75c585cd-05ce-442d-b4b4-4f643681dd1c.rna_seq.genomic.gdc_realn.bam 9069892908 BAM genomic harmonized CPTAC3 ac19d24e-8293-47f2-b031-42740349b60a 07d9a3f90bd7e5d2a5cc4ef2c07b691e { 'aliquot_tag': 'ALQ_98c84137', 'gdc_sample_type': 'Primary Tumor' } +C3N-02295.RNA-Seq.R1_L006.T C3N-02295 PDA RNA-Seq tumor CPT0187550010 190725_UNC32-K00270_0194_AH7HHFBBXY_ACCTTGGC-GGCCTCAT_S24_L006_R1_001.fastq.gz 3742479935 FASTQ R1_L006 unaligned CPTAC3 14b4b5bd-ba97-4a24-b0d7-0df326984d51 98d16d774f91a9b7de5ad3eb3902b677 { 'aliquot_tag': 'ALQ_98c84137', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02295.RNA-Seq.R2_L006.T C3N-02295 PDA RNA-Seq tumor CPT0187550010 190725_UNC32-K00270_0194_AH7HHFBBXY_ACCTTGGC-GGCCTCAT_S24_L006_R2_001.fastq.gz 3883901902 FASTQ R2_L006 unaligned CPTAC3 2511ef1a-6268-4f0f-aa35-53e07ae3ec43 8e9a40a7b3f69c7acece27ec06f197cf { 'aliquot_tag': 'ALQ_98c84137', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-02295.RNA-Seq.transcriptome.T.hg38 C3N-02295 PDA RNA-Seq tumor CPT0187550010 75c585cd-05ce-442d-b4b4-4f643681dd1c.rna_seq.transcriptome.gdc_realn.bam 8576070402 BAM transcriptome harmonized CPTAC3 963572dc-a16f-463f-a811-9388a8255e12 5ea02305c2371a645fb3409ac5b0eb2d { 'aliquot_tag': 'ALQ_98c84137', 'gdc_sample_type': 'Primary Tumor' } C3N-02295.WGS.N C3N-02295 PDA WGS blood_normal CPT0187580002 CPT0187580002.WholeGenome.RP-1303.bam 81020343239 BAM aligned CPTAC3 ed904aab-3df3-44d6-bb02-030cad8ac100 8ce4259c1a75fce3fd56878e6cea7f21 { 'aliquot_tag': 'ALQ_974dd5eb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02295.WGS.N.hg38 C3N-02295 PDA WGS blood_normal CPT0187580002 2b52e0f0-76f7-450b-9111-2b3620ff77ae_wgs_gdc_realn.bam 117148874345 BAM harmonized CPTAC3 254ba69b-cf57-4383-b912-f0eb2e55ed7e fb24613a6ffbee46dec51ca2dd06ba88 { 'aliquot_tag': 'ALQ_974dd5eb', 'gdc_sample_type': 'Blood Derived Normal' } @@ -30675,13 +32783,16 @@ C3N-02296.MethArray.Green.T C3N-02296 UCEC Methylation Array tumor CPT0181750007 C3N-02296.MethArray.Red.T C3N-02296 UCEC Methylation Array tumor CPT0181750007 203561450023_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 f5a3664a-ca1b-4ca6-befb-1892dafbd17d 95979243b907d5a3e746cee00daa9fca { 'aliquot_tag': 'ALQ_31af71e4', 'gdc_sample_type': 'Primary Tumor' } C3N-02296.miRNA-Seq.T C3N-02296 UCEC miRNA-Seq tumor CPT0181750010 190508_UNC31-K00269_0215_BH7FYKBBXY_GGCTAC_S11_L001_R1_001.unaln.bam 222233772 BAM unaligned CPTAC3 f7144f2c-f7c7-410c-8ae7-e38f46696cc2 b2c317f729edbebaa9ab8e57ab6ce78c { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor' } C3N-02296.miRNA-Seq.T.hg38 C3N-02296 UCEC miRNA-Seq tumor CPT0181750010 477834f2-9734-4765-b922-41ce2b541168_mirnaseq_gdc_realn.bam 253176962 BAM harmonized CPTAC3 443bb8b5-caa8-4f50-83ac-bc09bd337da6 e6c60e6e4b51c3c2f895acce200717d8 { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor' } -C3N-02296.RNA-Seq.chimeric.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 386bc567-0f7a-4721-968d-3af5e0341226.rna_seq.chimeric.gdc_realn.bam 27344463 BAM chimeric harmonized CPTAC3 33a4445c-0c5e-4c9f-aba8-901396388596 11ffe0a7e102fe54cc20d2dc6906b99e { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor' } -C3N-02296.RNA-Seq.genomic.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 386bc567-0f7a-4721-968d-3af5e0341226.rna_seq.genomic.gdc_realn.bam 7998067882 BAM genomic harmonized CPTAC3 915f5679-0009-48eb-8aff-d3057fd33a82 d2841345b5fa366ee8f68f2062fc84a4 { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor' } -C3N-02296.RNA-Seq.R1_L005.T C3N-02296 UCEC RNA-Seq tumor CPT0181750010 190426_UNC32-K00270_0167_AH7CK7BBXY_TCTCTACT-CGCGGTTC_S17_L005_R1_001.fastq.gz 3777809552 FASTQ R1_L005 unaligned CPTAC3 d4cb0eb7-5743-419d-bf52-2ecd6584adc5 1e71a327fe1963925d6308885bbe8f34 { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor' } -C3N-02296.RNA-Seq.R1_.T C3N-02296 UCEC RNA-Seq tumor CPT0352770001 20210729_P3_D1_WB7988-Plate3_S37_R1_001.fastq.gz 3925584328 FASTQ R1_ unaligned CPTAC3 fa837b92-9861-4f19-950b-34570bfc26a3 ccc05e9676665f8f54d8eb61708705ee { 'aliquot_tag': 'ALQ_2617a07b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02296.RNA-Seq.R2_L005.T C3N-02296 UCEC RNA-Seq tumor CPT0181750010 190426_UNC32-K00270_0167_AH7CK7BBXY_TCTCTACT-CGCGGTTC_S17_L005_R2_001.fastq.gz 4294075307 FASTQ R2_L005 unaligned CPTAC3 8e279613-4356-438a-bdc4-f2dd0636bfa5 29b035e8644cf14aa8203ef17a5a9b9a { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor' } -C3N-02296.RNA-Seq.R2_.T C3N-02296 UCEC RNA-Seq tumor CPT0352770001 20210729_P3_D1_WB7988-Plate3_S37_R2_001.fastq.gz 4043349505 FASTQ R2_ unaligned CPTAC3 e3589299-e784-4d69-b135-8429b2b9f4dd 73c5166bd517cf1459fe9b9d09c84538 { 'aliquot_tag': 'ALQ_2617a07b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02296.RNA-Seq.transcriptome.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 386bc567-0f7a-4721-968d-3af5e0341226.rna_seq.transcriptome.gdc_realn.bam 7834072879 BAM transcriptome harmonized CPTAC3 045e662e-114a-440f-9d30-b109c8364fe7 76ac56b89929a5a471578738b232b848 { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor' } +C3N-02296.RNA-Seq.chimeric.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 0e980f6e-4690-4a20-bf3d-24eba80ad987.rna_seq.chimeric.gdc_realn.bam 27333199 BAM chimeric harmonized CPTAC3 cab9c7d6-700a-4382-ae41-87bae3f1579b e5cbaebdbb8b4f5a385bfd68d6ba2f59 { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor' } +C3N-02296.RNA-Seq.chimeric.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0352770001 552dcfb5-ee47-4724-ac09-8dca65e99b6f.rna_seq.chimeric.gdc_realn.bam 82008474 BAM chimeric harmonized CPTAC3 543ec380-d4b3-4371-82d4-3529d09cbcc6 33c2224bb33ba4a7245c3168c9d95c0b { 'aliquot_tag': 'ALQ_2617a07b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02296.RNA-Seq.genomic.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 0e980f6e-4690-4a20-bf3d-24eba80ad987.rna_seq.genomic.gdc_realn.bam 8000022800 BAM genomic harmonized CPTAC3 893f8c34-e100-466a-a574-6c0c52857987 e57027aae664409abe9d64720d58845f { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor' } +C3N-02296.RNA-Seq.genomic.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0352770001 552dcfb5-ee47-4724-ac09-8dca65e99b6f.rna_seq.genomic.gdc_realn.bam 6145835613 BAM genomic harmonized CPTAC3 966e69d5-291a-448a-92da-e75c60f8a548 126de7e585cb0c7d41a257653570483f { 'aliquot_tag': 'ALQ_2617a07b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02296.RNA-Seq.R1_L005.T C3N-02296 UCEC RNA-Seq tumor CPT0181750010 190426_UNC32-K00270_0167_AH7CK7BBXY_TCTCTACT-CGCGGTTC_S17_L005_R1_001.fastq.gz 3777809552 FASTQ R1_L005 unaligned CPTAC3 d4cb0eb7-5743-419d-bf52-2ecd6584adc5 1e71a327fe1963925d6308885bbe8f34 { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02296.RNA-Seq.R2_L005.T C3N-02296 UCEC RNA-Seq tumor CPT0181750010 190426_UNC32-K00270_0167_AH7CK7BBXY_TCTCTACT-CGCGGTTC_S17_L005_R2_001.fastq.gz 4294075307 FASTQ R2_L005 unaligned CPTAC3 8e279613-4356-438a-bdc4-f2dd0636bfa5 29b035e8644cf14aa8203ef17a5a9b9a { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02296.RNA-Seq.T C3N-02296 UCEC RNA-Seq tumor CPT0352770001 20210729_P3_D1_WB7988-Plate3_S37_R1_001.fastq.gz 3925584328 FASTQ unaligned CPTAC3 fa837b92-9861-4f19-950b-34570bfc26a3 ccc05e9676665f8f54d8eb61708705ee +C3N-02296.RNA-Seq.T C3N-02296 UCEC RNA-Seq tumor CPT0352770001 20210729_P3_D1_WB7988-Plate3_S37_R2_001.fastq.gz 4043349505 FASTQ unaligned CPTAC3 e3589299-e784-4d69-b135-8429b2b9f4dd 73c5166bd517cf1459fe9b9d09c84538 +C3N-02296.RNA-Seq.transcriptome.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0181750010 0e980f6e-4690-4a20-bf3d-24eba80ad987.rna_seq.transcriptome.gdc_realn.bam 9005006478 BAM transcriptome harmonized CPTAC3 bbe16c89-5b65-46a1-942d-c1d3ca22c1df d6f8b6d973cbfb0b78640bcc2600a53f { 'aliquot_tag': 'ALQ_b6d0d506', 'gdc_sample_type': 'Primary Tumor' } +C3N-02296.RNA-Seq.transcriptome.T.hg38 C3N-02296 UCEC RNA-Seq tumor CPT0352770001 552dcfb5-ee47-4724-ac09-8dca65e99b6f.rna_seq.transcriptome.gdc_realn.bam 3491190138 BAM transcriptome harmonized CPTAC3 e78aea99-5030-47c8-ac79-6f593316cc4b 64dabde4c52272bb63d2b85ee59751fe { 'aliquot_tag': 'ALQ_2617a07b', 'gdc_sample_type': 'Primary Tumor' } C3N-02296.WGS.N C3N-02296 UCEC WGS blood_normal CPT0181800002 CPT0181800002.WholeGenome.RP-1303.bam 67991657844 BAM aligned CPTAC3 e0170187-b9bc-4c22-a231-ac8385394688 0c8a3c17a756215524ec8bbfb25c0d5a { 'aliquot_tag': 'ALQ_7873b8ce', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02296.WGS.N.hg38 C3N-02296 UCEC WGS blood_normal CPT0181800002 38b1683f-1ef5-4461-9b87-8d56ab949bb5_wgs_gdc_realn.bam 101022019618 BAM harmonized CPTAC3 5221bce8-09e9-4a61-a689-239333730b82 687680c11a0b81a256d3e378ac16f765 { 'aliquot_tag': 'ALQ_7873b8ce', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02296.WGS.T C3N-02296 UCEC WGS tumor CPT0181750007 CPT0181750007.WholeGenome.RP-1303.bam 93581911810 BAM aligned CPTAC3 11757ed4-777c-4c80-920d-e92741ca28bf 5f907be9baed5eeeea1939919812c6ce { 'aliquot_tag': 'ALQ_31af71e4', 'gdc_sample_type': 'Primary Tumor' } @@ -30691,17 +32802,21 @@ C3N-02296.WXS.N.hg38 C3N-02296 UCEC WXS blood_normal CPT0181800002 38b1683f-1ef5 C3N-02296.WXS.T C3N-02296 UCEC WXS tumor CPT0181750007 CPT0181750007.WholeExome.RP-1303.bam 25075013315 BAM aligned CPTAC3 ee0e9a22-ea1b-4bbb-876c-8ef889cd1fc5 5cf52d37567fd5bced1377d1c49ad5a7 { 'aliquot_tag': 'ALQ_31af71e4', 'gdc_sample_type': 'Primary Tumor' } C3N-02296.WXS.T.hg38 C3N-02296 UCEC WXS tumor CPT0181750007 868c6a57-64e0-450f-a151-139f5520286d_wxs_gdc_realn.bam 35065589363 BAM harmonized CPTAC3 6e957dcc-be9b-43c6-bfab-bf86027c7bcf 2d56fe66a690d2eb8ff49094684948c7 { 'aliquot_tag': 'ALQ_31af71e4', 'gdc_sample_type': 'Primary Tumor' } C3N-02298.DUP_685702ad.WGS.T C3N-02298 UCEC WGS tumor CPT0181540011_1 CPT0181540011_1.WholeGenome.RP-1303.bam 84904324723 BAM aligned CPTAC3 2b5a4b6e-a856-4dbf-926e-53a8d9c87ac6 25a1e13523d61d22892ac0243756e57c { 'aliquot_tag': 'DUP_685702ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } +C3N-02298.DUP_685702ad.WGS.T.hg38 C3N-02298 UCEC WGS tumor CPT0181540011_1 c4172299-9d30-448b-982f-cea1391d7d05_wgs_gdc_realn.bam 121732677923 BAM harmonized CPTAC3 d1651a46-cc2f-4694-9861-f68ace614190 436625cdeb59cfc4b95932ae414b9513 { 'aliquot_tag': 'DUP_685702ad', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } C3N-02298.MethArray.Green.T C3N-02298 UCEC Methylation Array tumor CPT0181540011 203561450099_R03C01_Grn.idat 13676216 IDAT Green NA CPTAC3 eccafdb3-11a8-49f3-9892-141f085e94b2 a9b91535f927787d71d54124f551b179 { 'aliquot_tag': 'ALQ_b17f6d2b', 'gdc_sample_type': 'Primary Tumor' } C3N-02298.MethArray.Red.T C3N-02298 UCEC Methylation Array tumor CPT0181540011 203561450099_R03C01_Red.idat 13676216 IDAT Red NA CPTAC3 cd149e4d-9e55-47f5-b16e-2aa9bb330598 61f2500e8f1e2d2b645b5729a3cc6652 { 'aliquot_tag': 'ALQ_b17f6d2b', 'gdc_sample_type': 'Primary Tumor' } C3N-02298.miRNA-Seq.T C3N-02298 UCEC miRNA-Seq tumor CPT0181540014 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGATC_S7_L003_R1_001.unaln.bam 266366872 BAM unaligned CPTAC3 bde8c5c2-140f-43cd-81ef-a6ba8dbbfbea 88df98548cd23bb86603a35001e680a4 { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor' } C3N-02298.miRNA-Seq.T.hg38 C3N-02298 UCEC miRNA-Seq tumor CPT0181540014 2878a2b4-7f2c-4a0a-bfc2-f254db7e4d6b_mirnaseq_gdc_realn.bam 301883158 BAM harmonized CPTAC3 2657b327-ba5d-46ac-a69c-5d2c65213504 fbd0c98e44a42e4b1c5e99eaec0542c4 { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02298.RNA-Seq.chimeric.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 d7a6b3aa-c2c1-43a3-811c-4345adf59d71.rna_seq.chimeric.gdc_realn.bam 41094752 BAM chimeric harmonized CPTAC3 332b5c4b-2d98-42d6-8c60-7b57972b6c21 39be98da7ce44e4dc3ef8eb9206c36b3 { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02298.RNA-Seq.genomic.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 d7a6b3aa-c2c1-43a3-811c-4345adf59d71.rna_seq.genomic.gdc_realn.bam 8847857430 BAM genomic harmonized CPTAC3 327a45c1-ba30-473f-8bce-81eb351a09cc a2360df4efc06c24a972289d6ff65a77 { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02298.RNA-Seq.R1_L001.T C3N-02298 UCEC RNA-Seq tumor CPT0181540014 190604_UNC32-K00270_0177_AH7F5VBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 4127484729 FASTQ R1_L001 unaligned CPTAC3 aaca3879-899a-4ddf-b2e9-9024cbda9e71 a1de4415aa2aa4005ea95ac7d5554a0c { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02298.RNA-Seq.R1_.T C3N-02298 UCEC RNA-Seq tumor CPT0352800001 20210723_P2_H10_WB7988-plate2_S94_R1_001.fastq.gz 7356800783 FASTQ R1_ unaligned CPTAC3 9edf50c8-0477-49a3-8d0f-fc0a7c92360c 805d7d252336e826cf020048c64ce599 { 'aliquot_tag': 'ALQ_6561cebe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02298.RNA-Seq.R2_L001.T C3N-02298 UCEC RNA-Seq tumor CPT0181540014 190604_UNC32-K00270_0177_AH7F5VBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 4769707164 FASTQ R2_L001 unaligned CPTAC3 0830ccd3-4258-48b7-835b-cc0fa004644d cf4f2b070042ad9a39dc98824fb8a2b9 { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02298.RNA-Seq.R2_.T C3N-02298 UCEC RNA-Seq tumor CPT0352800001 20210723_P2_H10_WB7988-plate2_S94_R2_001.fastq.gz 7435454526 FASTQ R2_ unaligned CPTAC3 3e5a9b90-f842-4103-b8a6-d13f8c517ddc 08ace21fd1788b76f5e9e54c994966dc { 'aliquot_tag': 'ALQ_6561cebe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02298.RNA-Seq.transcriptome.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 d7a6b3aa-c2c1-43a3-811c-4345adf59d71.rna_seq.transcriptome.gdc_realn.bam 11606751268 BAM transcriptome harmonized CPTAC3 a3bf72af-b656-4b20-8b2c-75299674003a 73bebc4b4a66a5f9a46484b602e9b860 { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02298.RNA-Seq.chimeric.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 fa02ca97-b0b2-45f0-a495-5865a5104d3e.rna_seq.chimeric.gdc_realn.bam 41084848 BAM chimeric harmonized CPTAC3 57ce30bc-b294-4c02-97fa-97ffdd771f2d c36d9a837f2d00c093798e1cb3c6f351 { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02298.RNA-Seq.chimeric.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0352800001 125cd4b1-9156-4e9f-b652-f9db43fec456.rna_seq.chimeric.gdc_realn.bam 205555511 BAM chimeric harmonized CPTAC3 2e781d4b-0c5d-4143-8832-4ea850a1fe89 4008ed7b9e02f27a751a9ac528389fc9 { 'aliquot_tag': 'ALQ_6561cebe', 'gdc_sample_type': 'Primary Tumor' } +C3N-02298.RNA-Seq.genomic.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 fa02ca97-b0b2-45f0-a495-5865a5104d3e.rna_seq.genomic.gdc_realn.bam 8848806046 BAM genomic harmonized CPTAC3 5c7e6c43-2e63-4ea1-af6b-937240b529e9 781f9cbd593d4c3c41899df94d9247d1 { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02298.RNA-Seq.genomic.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0352800001 125cd4b1-9156-4e9f-b652-f9db43fec456.rna_seq.genomic.gdc_realn.bam 10553987540 BAM genomic harmonized CPTAC3 1389c645-113c-499b-bfa9-606e1020ef93 7eaa4e9d0cda4a8b8279195c0527277a { 'aliquot_tag': 'ALQ_6561cebe', 'gdc_sample_type': 'Primary Tumor' } +C3N-02298.RNA-Seq.R1_L001.T C3N-02298 UCEC RNA-Seq tumor CPT0181540014 190604_UNC32-K00270_0177_AH7F5VBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 4127484729 FASTQ R1_L001 unaligned CPTAC3 aaca3879-899a-4ddf-b2e9-9024cbda9e71 a1de4415aa2aa4005ea95ac7d5554a0c { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02298.RNA-Seq.R2_L001.T C3N-02298 UCEC RNA-Seq tumor CPT0181540014 190604_UNC32-K00270_0177_AH7F5VBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 4769707164 FASTQ R2_L001 unaligned CPTAC3 0830ccd3-4258-48b7-835b-cc0fa004644d cf4f2b070042ad9a39dc98824fb8a2b9 { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02298.RNA-Seq.T C3N-02298 UCEC RNA-Seq tumor CPT0352800001 20210723_P2_H10_WB7988-plate2_S94_R1_001.fastq.gz 7356800783 FASTQ unaligned CPTAC3 9edf50c8-0477-49a3-8d0f-fc0a7c92360c 805d7d252336e826cf020048c64ce599 +C3N-02298.RNA-Seq.T C3N-02298 UCEC RNA-Seq tumor CPT0352800001 20210723_P2_H10_WB7988-plate2_S94_R2_001.fastq.gz 7435454526 FASTQ unaligned CPTAC3 3e5a9b90-f842-4103-b8a6-d13f8c517ddc 08ace21fd1788b76f5e9e54c994966dc +C3N-02298.RNA-Seq.transcriptome.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0181540014 fa02ca97-b0b2-45f0-a495-5865a5104d3e.rna_seq.transcriptome.gdc_realn.bam 13295725310 BAM transcriptome harmonized CPTAC3 f6050ca8-8993-4ec4-a506-6f8a479338bb 3281acdfac41f32df05efd3a25089625 { 'aliquot_tag': 'ALQ_c11599a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02298.RNA-Seq.transcriptome.T.hg38 C3N-02298 UCEC RNA-Seq tumor CPT0352800001 125cd4b1-9156-4e9f-b652-f9db43fec456.rna_seq.transcriptome.gdc_realn.bam 6868148317 BAM transcriptome harmonized CPTAC3 d053eb02-2140-4582-92b0-061e6c2fc143 d90b4a8adde611ef6e9d5b150d8c43ac { 'aliquot_tag': 'ALQ_6561cebe', 'gdc_sample_type': 'Primary Tumor' } C3N-02298.WGS.N C3N-02298 UCEC WGS blood_normal CPT0181590002 CPT0181590002.WholeGenome.RP-1303.bam 72470198572 BAM aligned CPTAC3 3ade8387-9a55-4c4e-aba5-b54e7d394bce 803f002a5dcd2cdf231d03c4488b69bc { 'aliquot_tag': 'ALQ_c9fdc961', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02298.WGS.N.hg38 C3N-02298 UCEC WGS blood_normal CPT0181590002 349b2062-2354-4d2c-b73a-a9edc1b9bb8d_wgs_gdc_realn.bam 105695375521 BAM harmonized CPTAC3 e5ed742b-3d0d-4f0c-b809-01d07b7e2fd4 bd015c33f1078a91c3d2ad9de5224d55 { 'aliquot_tag': 'ALQ_c9fdc961', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02298.WGS.T C3N-02298 UCEC WGS tumor CPT0181540011 CPT0181540011.WholeGenome.RP-1303.bam 24798515329 BAM aligned CPTAC3 f0aa6400-2b52-4ace-8cd3-d88a1971204a dd6cfa56a9b8b59bd2d1fcd2cf2035bf { 'aliquot_tag': 'ALQ_b17f6d2b', 'gdc_sample_type': 'Primary Tumor' } @@ -30719,11 +32834,11 @@ C3N-02300.miRNA-Seq.T.hg38 C3N-02300 LSCC miRNA-Seq tumor CPT0126810009 8d551311 C3N-02300.RNA-Seq.chimeric.A.hg38 C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 e1112e85-b136-45cc-89b9-db73db5a490a.rna_seq.chimeric.gdc_realn.bam 25333298 BAM chimeric harmonized CPTAC3 1177e410-c6ef-4555-80b6-30c5e7c0d3f6 085c28325d3e3cd3e72ea7c7b2368286 { 'aliquot_tag': 'ALQ_6cd92441', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02300.RNA-Seq.chimeric.T.hg38 C3N-02300 LSCC RNA-Seq tumor CPT0126810009 525f2502-b433-45e0-aa7b-464af94b3924.rna_seq.chimeric.gdc_realn.bam 31580263 BAM chimeric harmonized CPTAC3 4c99d89b-f49c-41f2-a00d-94708f9fb78e d2dfe47d944f6e1a6c5714086f195c79 { 'aliquot_tag': 'ALQ_86a66ab0', 'gdc_sample_type': 'Primary Tumor' } C3N-02300.RNA-Seq.genomic.A.hg38 C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 e1112e85-b136-45cc-89b9-db73db5a490a.rna_seq.genomic.gdc_realn.bam 7234462231 BAM genomic harmonized CPTAC3 dda2a1ca-60cb-4a47-b396-5f46cdc00219 d43399bd681b0f2d09da69be6fa0bcf7 { 'aliquot_tag': 'ALQ_6cd92441', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02300.RNA-Seq.genomic.T.hg38 C3N-02300 LSCC RNA-Seq tumor CPT0126810009 525f2502-b433-45e0-aa7b-464af94b3924.rna_seq.genomic.gdc_realn.bam 9576947026 BAM genomic harmonized CPTAC3 f10b1d62-2705-4fd3-94af-d9f998434325 54bb1cc024670bfb8e950e88845fd645 { 'aliquot_tag': 'ALQ_86a66ab0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02300.RNA-Seq.R1_L007.A C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3376960138 FASTQ R1_L007 unaligned CPTAC3 1d3721f9-f99a-4c6e-9811-c1355ff4a7bd 4c758ad01624aa3297aff41df47fe0f6 { 'aliquot_tag': 'ALQ_6cd92441', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02300.RNA-Seq.R1_L008.T C3N-02300 LSCC RNA-Seq tumor CPT0126810009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTTCC_S30_L008_R1_001.fastq.gz 4200891062 FASTQ R1_L008 unaligned CPTAC3 a75baa4b-2aa6-4501-acff-d3a7dc1ac6e4 b561faeb7c608f7f97996108832866de { 'aliquot_tag': 'ALQ_86a66ab0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02300.RNA-Seq.R2_L007.A C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 3485988632 FASTQ R2_L007 unaligned CPTAC3 99d881cd-9d4e-43a1-858c-a61d1ad39045 9857be650f56f97529aaa7d2ad19f355 { 'aliquot_tag': 'ALQ_6cd92441', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02300.RNA-Seq.R2_L008.T C3N-02300 LSCC RNA-Seq tumor CPT0126810009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTTCC_S30_L008_R2_001.fastq.gz 4472755987 FASTQ R2_L008 unaligned CPTAC3 ae849cb4-5b50-4e71-bd1f-f70dcb64db77 999f1ee609bbe4789f06d68b56569bbe { 'aliquot_tag': 'ALQ_86a66ab0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02300.RNA-Seq.genomic.T.hg38 C3N-02300 LSCC RNA-Seq tumor CPT0126810009 525f2502-b433-45e0-aa7b-464af94b3924.rna_seq.genomic.gdc_realn.bam 9576947026 BAM genomic harmonized CPTAC3 2ea026e1-eb5b-4872-bf5d-b79463eecb05 54bb1cc024670bfb8e950e88845fd645 { 'aliquot_tag': 'ALQ_86a66ab0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02300.RNA-Seq.R1_L007.A C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L007_R1_001.fastq.gz 3376960138 FASTQ R1_L007 unaligned CPTAC3 1d3721f9-f99a-4c6e-9811-c1355ff4a7bd 4c758ad01624aa3297aff41df47fe0f6 { 'aliquot_tag': 'ALQ_6cd92441', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02300.RNA-Seq.R1_L008.T C3N-02300 LSCC RNA-Seq tumor CPT0126810009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTTCC_S30_L008_R1_001.fastq.gz 4200891062 FASTQ R1_L008 unaligned CPTAC3 a75baa4b-2aa6-4501-acff-d3a7dc1ac6e4 b561faeb7c608f7f97996108832866de { 'aliquot_tag': 'ALQ_86a66ab0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02300.RNA-Seq.R2_L007.A C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L007_R2_001.fastq.gz 3485988632 FASTQ R2_L007 unaligned CPTAC3 99d881cd-9d4e-43a1-858c-a61d1ad39045 9857be650f56f97529aaa7d2ad19f355 { 'aliquot_tag': 'ALQ_6cd92441', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02300.RNA-Seq.R2_L008.T C3N-02300 LSCC RNA-Seq tumor CPT0126810009 180925_UNC32-K00270_0122_BHWNF7BBXX_AGTTCC_S30_L008_R2_001.fastq.gz 4472755987 FASTQ R2_L008 unaligned CPTAC3 ae849cb4-5b50-4e71-bd1f-f70dcb64db77 999f1ee609bbe4789f06d68b56569bbe { 'aliquot_tag': 'ALQ_86a66ab0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02300.RNA-Seq.transcriptome.A.hg38 C3N-02300 LSCC RNA-Seq tissue_normal CPT0126830006 e1112e85-b136-45cc-89b9-db73db5a490a.rna_seq.transcriptome.gdc_realn.bam 9682639614 BAM transcriptome harmonized CPTAC3 165a3b5a-adbb-4b7d-8ed1-747a5a83152e 6806134708ea3d2e7292899a9f52dc38 { 'aliquot_tag': 'ALQ_6cd92441', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02300.RNA-Seq.transcriptome.T.hg38 C3N-02300 LSCC RNA-Seq tumor CPT0126810009 525f2502-b433-45e0-aa7b-464af94b3924.rna_seq.transcriptome.gdc_realn.bam 11779622461 BAM transcriptome harmonized CPTAC3 970a7fcd-8996-4b4d-b0eb-a923d16879ae bbc049e4b8abb682577adce3b2b5605f { 'aliquot_tag': 'ALQ_86a66ab0', 'gdc_sample_type': 'Primary Tumor' } C3N-02300.WGS.N C3N-02300 LSCC WGS blood_normal CPT0126870002 CPT0126870002.WholeGenome.RP-1303.bam 60773893845 BAM aligned CPTAC3 95f80826-653b-47a0-8370-9252ad923397 90a887bc999273b4e10c20b88b5a3a97 { 'aliquot_tag': 'ALQ_9e344698', 'gdc_sample_type': 'Blood Derived Normal' } @@ -30738,13 +32853,16 @@ C3N-02302.MethArray.Green.T C3N-02302 UCEC Methylation Array tumor CPT0181610006 C3N-02302.MethArray.Red.T C3N-02302 UCEC Methylation Array tumor CPT0181610006 203561620040_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 f7b50295-c9c8-4b5e-b419-5005bd71d33d 6bf1d0eebf8cc469ccc8a0cd14915733 { 'aliquot_tag': 'ALQ_78743417', 'gdc_sample_type': 'Primary Tumor' } C3N-02302.miRNA-Seq.T C3N-02302 UCEC miRNA-Seq tumor CPT0181610009 190813_UNC32-K00270_0196_AH5MCWBBXY_CTTGTA_S41_L002_R1_001.unaln.bam 157462933 BAM unaligned CPTAC3 3da87b62-1cae-460b-b066-f0c90c0498ec 99bc78a34677dbc6599051968fdd1c95 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor' } C3N-02302.miRNA-Seq.T.hg38 C3N-02302 UCEC miRNA-Seq tumor CPT0181610009 3db31096-7e50-465e-8b35-65981245d4ba_mirnaseq_gdc_realn.bam 179152113 BAM harmonized CPTAC3 79672171-0d51-435c-b6b2-df79856ce098 cc699929daddb12adcb8ad39b5da65f4 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor' } -C3N-02302.RNA-Seq.chimeric.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 a4a3a6d0-501f-418a-ab10-3f20cac2abe1.rna_seq.chimeric.gdc_realn.bam 237897028 BAM chimeric harmonized CPTAC3 646f9fd8-c905-48e2-8525-6b18b168a0fb 2d98b3c9fbd9f85289d8b383ab0dd366 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor' } -C3N-02302.RNA-Seq.genomic.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 a4a3a6d0-501f-418a-ab10-3f20cac2abe1.rna_seq.genomic.gdc_realn.bam 7305392223 BAM genomic harmonized CPTAC3 2c43f206-0cc5-4a17-b297-2bc2cfc183a7 f943f658814f9fa9f3f65be91ab2156e { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor' } -C3N-02302.RNA-Seq.R1_L006.T C3N-02302 UCEC RNA-Seq tumor CPT0181610009 190717_UNC31-K00269_0233_BH7HG5BBXY_AGCTCGCT-GCAGAATC_S21_L006_R1_001.fastq.gz 2755206862 FASTQ R1_L006 unaligned CPTAC3 b2c0dc56-6c8a-4a26-b1e9-f3516abe3a8c f5d3b9a9b33878f39480a85eea99e265 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor' } -C3N-02302.RNA-Seq.R1_.T C3N-02302 UCEC RNA-Seq tumor CPT0352830001 20210723_P2_A5_WB7988-plate2_S5_R1_001.fastq.gz 3939772528 FASTQ R1_ unaligned CPTAC3 8f01624d-e213-495a-abd8-1641e8f3d1d2 4e9513ffdd261fbe83db7036d261ddcf { 'aliquot_tag': 'ALQ_22c1b46e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02302.RNA-Seq.R2_L006.T C3N-02302 UCEC RNA-Seq tumor CPT0181610009 190717_UNC31-K00269_0233_BH7HG5BBXY_AGCTCGCT-GCAGAATC_S21_L006_R2_001.fastq.gz 2801432321 FASTQ R2_L006 unaligned CPTAC3 6dc0ca31-8311-4a14-b402-78fc7a24c7c6 7a2f36edaad79c2aff68a28b3c87b117 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor' } -C3N-02302.RNA-Seq.R2_.T C3N-02302 UCEC RNA-Seq tumor CPT0352830001 20210723_P2_A5_WB7988-plate2_S5_R2_001.fastq.gz 3988555595 FASTQ R2_ unaligned CPTAC3 6c6ae92a-6fbd-44e9-858a-d436eaac94dc 5a36fd32d037427f6f6370f0919f88c9 { 'aliquot_tag': 'ALQ_22c1b46e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02302.RNA-Seq.transcriptome.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 a4a3a6d0-501f-418a-ab10-3f20cac2abe1.rna_seq.transcriptome.gdc_realn.bam 4688582993 BAM transcriptome harmonized CPTAC3 8d98b388-cb0c-407e-be6f-1cfe7b097075 94885da903c945ec165ca6406632ce20 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor' } +C3N-02302.RNA-Seq.chimeric.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 251f606a-300c-42e6-bebf-9daa4a13dc6a.rna_seq.chimeric.gdc_realn.bam 237868688 BAM chimeric harmonized CPTAC3 099532a6-485e-466a-af19-e2266f26a707 bc60f1532d48c47b174398beabbc25e3 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor' } +C3N-02302.RNA-Seq.chimeric.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0352830001 dfc61faf-4f00-4682-a0a0-d537dd35879b.rna_seq.chimeric.gdc_realn.bam 128963289 BAM chimeric harmonized CPTAC3 3a407b01-a7be-47d3-bda6-669f989eae8c 7be69ac36cad44153913c6c95a9f3429 { 'aliquot_tag': 'ALQ_22c1b46e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02302.RNA-Seq.genomic.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 251f606a-300c-42e6-bebf-9daa4a13dc6a.rna_seq.genomic.gdc_realn.bam 7306421604 BAM genomic harmonized CPTAC3 7b05d470-c65e-4389-9f90-192d59f5872f ef08293301b081cf3c4144055fbf9262 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor' } +C3N-02302.RNA-Seq.genomic.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0352830001 dfc61faf-4f00-4682-a0a0-d537dd35879b.rna_seq.genomic.gdc_realn.bam 8434995849 BAM genomic harmonized CPTAC3 d6527870-bdaf-4e38-af53-107ec6254083 df1f9def973d60f8a38d882428012171 { 'aliquot_tag': 'ALQ_22c1b46e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02302.RNA-Seq.R1_L006.T C3N-02302 UCEC RNA-Seq tumor CPT0181610009 190717_UNC31-K00269_0233_BH7HG5BBXY_AGCTCGCT-GCAGAATC_S21_L006_R1_001.fastq.gz 2755206862 FASTQ R1_L006 unaligned CPTAC3 b2c0dc56-6c8a-4a26-b1e9-f3516abe3a8c f5d3b9a9b33878f39480a85eea99e265 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02302.RNA-Seq.R2_L006.T C3N-02302 UCEC RNA-Seq tumor CPT0181610009 190717_UNC31-K00269_0233_BH7HG5BBXY_AGCTCGCT-GCAGAATC_S21_L006_R2_001.fastq.gz 2801432321 FASTQ R2_L006 unaligned CPTAC3 6dc0ca31-8311-4a14-b402-78fc7a24c7c6 7a2f36edaad79c2aff68a28b3c87b117 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02302.RNA-Seq.T C3N-02302 UCEC RNA-Seq tumor CPT0352830001 20210723_P2_A5_WB7988-plate2_S5_R1_001.fastq.gz 3939772528 FASTQ unaligned CPTAC3 8f01624d-e213-495a-abd8-1641e8f3d1d2 4e9513ffdd261fbe83db7036d261ddcf +C3N-02302.RNA-Seq.T C3N-02302 UCEC RNA-Seq tumor CPT0352830001 20210723_P2_A5_WB7988-plate2_S5_R2_001.fastq.gz 3988555595 FASTQ unaligned CPTAC3 6c6ae92a-6fbd-44e9-858a-d436eaac94dc 5a36fd32d037427f6f6370f0919f88c9 +C3N-02302.RNA-Seq.transcriptome.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0181610009 251f606a-300c-42e6-bebf-9daa4a13dc6a.rna_seq.transcriptome.gdc_realn.bam 5350350022 BAM transcriptome harmonized CPTAC3 b568421b-97f7-4a29-8787-4f3b4cefaaee 519ee4f16c9d33b9f379ec844b0ce3c4 { 'aliquot_tag': 'ALQ_e8cb2986', 'gdc_sample_type': 'Primary Tumor' } +C3N-02302.RNA-Seq.transcriptome.T.hg38 C3N-02302 UCEC RNA-Seq tumor CPT0352830001 dfc61faf-4f00-4682-a0a0-d537dd35879b.rna_seq.transcriptome.gdc_realn.bam 3307183187 BAM transcriptome harmonized CPTAC3 a35ec888-511e-4adc-9081-6130532b59a6 e09b36c26acc08f785652ff696657f08 { 'aliquot_tag': 'ALQ_22c1b46e', 'gdc_sample_type': 'Primary Tumor' } C3N-02302.WGS.N C3N-02302 UCEC WGS blood_normal CPT0181660002 CPT0181660002.WholeGenome.RP-1303.bam 76535186399 BAM aligned CPTAC3 d4c215a5-c635-498d-bb53-0decd657b9ee f40ef772d595e85d5e04f68ef08a4cb6 { 'aliquot_tag': 'ALQ_cd392c1e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02302.WGS.N.hg38 C3N-02302 UCEC WGS blood_normal CPT0181660002 307efc27-4a1a-4bd5-8705-31e1573bd0fb_wgs_gdc_realn.bam 110881040007 BAM harmonized CPTAC3 ae1586f1-701a-4540-9728-5c2f0ab51d19 31535f0a004eb565de8837f561bfa5df { 'aliquot_tag': 'ALQ_cd392c1e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02302.WGS.T C3N-02302 UCEC WGS tumor CPT0181610006 CPT0181610006.WholeGenome.RP-1303.bam 68924090536 BAM aligned CPTAC3 1ea2e473-2b8a-448b-a977-748b5c9e63f8 c638afb8770dbe2d8a69738801e15535 { 'aliquot_tag': 'ALQ_78743417', 'gdc_sample_type': 'Primary Tumor' } @@ -30761,16 +32879,16 @@ C3N-02332.miRNA-Seq.A C3N-02332 CCRCC miRNA-Seq tissue_normal CPT0135770009 1901 C3N-02332.miRNA-Seq.A.hg38 C3N-02332 CCRCC miRNA-Seq tissue_normal CPT0135770009 ba80e56d-05f9-44e9-a5d2-c35ffcbfe2de_mirnaseq_gdc_realn.bam 181680958 BAM harmonized CPTAC3 93cab33c-ce00-4c84-90cb-b27fc13a7186 3ac5271f7dea9cbde82c18e91ac56f5c { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02332.miRNA-Seq.T C3N-02332 CCRCC miRNA-Seq tumor CPT0135740006 190108_UNC31-K00269_0176_AHYGLVBBXX_TCATTC_S45_L005_R1_001.unaln.bam 216096092 BAM unaligned CPTAC3 7054bbd1-02f7-4dab-aad7-49366f0a605a 6baf415763f226a8a91be9508293f369 { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor' } C3N-02332.miRNA-Seq.T.hg38 C3N-02332 CCRCC miRNA-Seq tumor CPT0135740006 b1081533-54c5-4177-abf7-c96e8b4c93af_mirnaseq_gdc_realn.bam 236910776 BAM harmonized CPTAC3 adf38a00-79ff-446b-bc37-e2acbcf583ec 5f0da4da55c4ef277415acad8c6dde3a { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor' } -C3N-02332.RNA-Seq.chimeric.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 b0ecff44-95b1-4c60-b7bc-a825cd04b889.rna_seq.chimeric.gdc_realn.bam 90373545 BAM chimeric harmonized CPTAC3 278b2dfe-b6ee-4014-a302-a2c201474dcd 176199e472ab90a29226a59fed51b9b6 { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02332.RNA-Seq.chimeric.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 4882a51e-a345-43ef-9699-2a832fd22060.rna_seq.chimeric.gdc_realn.bam 34304608 BAM chimeric harmonized CPTAC3 913edd5e-c279-4d50-add3-0ca21fe84f57 6762390ff66e68f24bccaaf9115fff3f { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor' } -C3N-02332.RNA-Seq.genomic.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 b0ecff44-95b1-4c60-b7bc-a825cd04b889.rna_seq.genomic.gdc_realn.bam 8396228667 BAM genomic harmonized CPTAC3 1e62e027-578c-4a11-bfb1-3c8db25a8fa8 dee740af03f846f1a937a327c0417be3 { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02332.RNA-Seq.genomic.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 4882a51e-a345-43ef-9699-2a832fd22060.rna_seq.genomic.gdc_realn.bam 7769925588 BAM genomic harmonized CPTAC3 79d8b760-c997-4cf4-830a-2cad1e63f3de 9869968e583fbaf12ed4a08419c6df8a { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor' } -C3N-02332.RNA-Seq.R1_L005.A C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 190125_UNC31-K00269_0184_AH3M32BBXY_TTAGGC_S12_L005_R1_001.fastq.gz 3819899797 FASTQ R1_L005 unaligned CPTAC3 9f68e3f0-fd45-42b2-97ae-3e321ac596b9 47f9a9c4c71060a236d27e2cd58047a3 { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02332.RNA-Seq.R1_L008.T C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 190104_UNC31-K00269_0175_BH32LHBBXY_CGTACG_S76_L008_R1_001.fastq.gz 3679221495 FASTQ R1_L008 unaligned CPTAC3 16540bbd-fce7-4f83-8dc3-66a7e65c5d8d 1ae8272122c29bc9062678875165b265 { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor' } -C3N-02332.RNA-Seq.R2_L005.A C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 190125_UNC31-K00269_0184_AH3M32BBXY_TTAGGC_S12_L005_R2_001.fastq.gz 4015907335 FASTQ R2_L005 unaligned CPTAC3 1f58a2d8-4839-4469-8f08-6d4b0f06e25d 58db1a78f544b07e93869a31c452adab { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02332.RNA-Seq.R2_L008.T C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 190104_UNC31-K00269_0175_BH32LHBBXY_CGTACG_S76_L008_R2_001.fastq.gz 3943506793 FASTQ R2_L008 unaligned CPTAC3 84d8e419-8b42-4f1e-9e2b-2c899ee9591a 865a7470888f314aece40dcab222f6a5 { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor' } -C3N-02332.RNA-Seq.transcriptome.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 b0ecff44-95b1-4c60-b7bc-a825cd04b889.rna_seq.transcriptome.gdc_realn.bam 8503161472 BAM transcriptome harmonized CPTAC3 8fad78dd-2d03-4db1-81c0-9094d37f1409 0a2ca3f1902e565daff1dabb5d565933 { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02332.RNA-Seq.transcriptome.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 4882a51e-a345-43ef-9699-2a832fd22060.rna_seq.transcriptome.gdc_realn.bam 8606935746 BAM transcriptome harmonized CPTAC3 872763ad-6fc3-49df-8f2d-19345cc2b914 1b287d9d898acd69e61a89d056c3e9b6 { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor' } +C3N-02332.RNA-Seq.chimeric.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 3e28f4ce-0a97-4bb3-a1ce-431277b42b4f.rna_seq.chimeric.gdc_realn.bam 90361985 BAM chimeric harmonized CPTAC3 6d03d99e-ff65-4f73-84e8-b6dfbc412ad9 14ad183cb8884fb9a7aec5ab7ccb2c58 { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02332.RNA-Seq.chimeric.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 eeb33022-ba53-404b-bfb8-0aded905b417.rna_seq.chimeric.gdc_realn.bam 34273899 BAM chimeric harmonized CPTAC3 0df64661-ad88-406c-8bff-483e608b65f6 3d77c813255c77df73d89f801da37e2c { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor' } +C3N-02332.RNA-Seq.genomic.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 3e28f4ce-0a97-4bb3-a1ce-431277b42b4f.rna_seq.genomic.gdc_realn.bam 8397339625 BAM genomic harmonized CPTAC3 7bcffd43-8eba-4f79-9b33-112d2b4f8b29 951aa8679e85f53109601c46ddca382c { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02332.RNA-Seq.genomic.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 eeb33022-ba53-404b-bfb8-0aded905b417.rna_seq.genomic.gdc_realn.bam 7770870244 BAM genomic harmonized CPTAC3 351ca12c-cfbc-4035-b219-3c7f4cb5ba42 74a9f9e643f15c126d7d92b9cdf8465b { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor' } +C3N-02332.RNA-Seq.R1_L005.A C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 190125_UNC31-K00269_0184_AH3M32BBXY_TTAGGC_S12_L005_R1_001.fastq.gz 3819899797 FASTQ R1_L005 unaligned CPTAC3 9f68e3f0-fd45-42b2-97ae-3e321ac596b9 47f9a9c4c71060a236d27e2cd58047a3 { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02332.RNA-Seq.R1_L008.T C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 190104_UNC31-K00269_0175_BH32LHBBXY_CGTACG_S76_L008_R1_001.fastq.gz 3679221495 FASTQ R1_L008 unaligned CPTAC3 16540bbd-fce7-4f83-8dc3-66a7e65c5d8d 1ae8272122c29bc9062678875165b265 { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02332.RNA-Seq.R2_L005.A C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 190125_UNC31-K00269_0184_AH3M32BBXY_TTAGGC_S12_L005_R2_001.fastq.gz 4015907335 FASTQ R2_L005 unaligned CPTAC3 1f58a2d8-4839-4469-8f08-6d4b0f06e25d 58db1a78f544b07e93869a31c452adab { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02332.RNA-Seq.R2_L008.T C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 190104_UNC31-K00269_0175_BH32LHBBXY_CGTACG_S76_L008_R2_001.fastq.gz 3943506793 FASTQ R2_L008 unaligned CPTAC3 84d8e419-8b42-4f1e-9e2b-2c899ee9591a 865a7470888f314aece40dcab222f6a5 { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02332.RNA-Seq.transcriptome.A.hg38 C3N-02332 CCRCC RNA-Seq tissue_normal CPT0135770009 3e28f4ce-0a97-4bb3-a1ce-431277b42b4f.rna_seq.transcriptome.gdc_realn.bam 9740722662 BAM transcriptome harmonized CPTAC3 02fb3a9a-e3cc-4289-abd7-d8f42bf63b31 1c028052b231c7444f9c732b0991d92b { 'aliquot_tag': 'ALQ_5f237c6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02332.RNA-Seq.transcriptome.T.hg38 C3N-02332 CCRCC RNA-Seq tumor CPT0135740006 eeb33022-ba53-404b-bfb8-0aded905b417.rna_seq.transcriptome.gdc_realn.bam 9817022410 BAM transcriptome harmonized CPTAC3 d854a6ed-9ada-41c4-a2e9-e6dda8dc7a7e cf2e30fe3f74cf61190910893cd168fa { 'aliquot_tag': 'ALQ_d2ed5087', 'gdc_sample_type': 'Primary Tumor' } C3N-02332.WGS.N C3N-02332 CCRCC WGS blood_normal CPT0135860002 CPT0135860002.WholeGenome.RP-1303.bam 53106306070 BAM aligned CPTAC3 a9354ce8-f0aa-4006-b43d-1043b3996d1d 7a529e8d5876e0c849c68bd3139c11da { 'aliquot_tag': 'ALQ_5e16752b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02332.WGS.N.hg38 C3N-02332 CCRCC WGS blood_normal CPT0135860002 225b554b-e33a-463e-a6d8-699f7692b126_wgs_gdc_realn.bam 76482193491 BAM harmonized CPTAC3 93e5a295-e6c0-4a31-9c06-258d370e953f d72956281afe31394d1dcf3fb86a97b9 { 'aliquot_tag': 'ALQ_5e16752b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02332.WGS.T C3N-02332 CCRCC WGS tumor CPT0135740009 CPT0135740009.WholeGenome.RP-1303.bam 49163161167 BAM aligned CPTAC3 927ad429-710b-4bb9-bb15-edd653287a74 96b0587150f19fa3f31c4e11c3cce6bc { 'aliquot_tag': 'ALQ_42524d16', 'gdc_sample_type': 'Primary Tumor' } @@ -30791,18 +32909,24 @@ C3N-02333.miRNA-Seq.T C3N-02333 HNSCC miRNA-Seq tumor CPT0176770009 190228_UNC32 C3N-02333.miRNA-Seq.T.hg38 C3N-02333 HNSCC miRNA-Seq tumor CPT0176770009 cf1391e9-db3f-45a3-8f76-73a2c2da72b7_mirnaseq_gdc_realn.bam 255778824 BAM harmonized CPTAC3 f37f0812-ad06-41aa-b071-68fab7be4641 107044c29253488193a05983c2d6eae5 { 'aliquot_tag': 'ALQ_b05023a1', 'gdc_sample_type': 'Primary Tumor' } C3N-02333.RNA-Seq.chimeric.A.hg38 C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 b2f97cd0-3c08-4273-8661-b0ef48f636ea.rna_seq.chimeric.gdc_realn.bam 102767581 BAM chimeric harmonized CPTAC3 11ea64d7-7d34-4d4b-96c0-e98089e8962f 91bec6a90a5ffc553794e569340bbeaf { 'aliquot_tag': 'ALQ_f609dc0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02333.RNA-Seq.chimeric.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 92546e51-b886-496b-bba9-48dcb0a3170f.rna_seq.chimeric.gdc_realn.bam 140879390 BAM chimeric harmonized CPTAC3 8b0c7aa1-6812-4fbc-ad06-ca335bfae314 70cb840b03bd7bfee8f46431ec1f2e1a { 'aliquot_tag': 'ALQ_b05023a1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02333.RNA-Seq.genomic.A.hg38 C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 b2f97cd0-3c08-4273-8661-b0ef48f636ea.rna_seq.genomic.gdc_realn.bam 11777210692 BAM genomic harmonized CPTAC3 4fc9adc9-b4c2-40ac-80de-e5c253b85882 3d958f58f52ad8a32545892a6ff4ebe0 { 'aliquot_tag': 'ALQ_f609dc0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02333.RNA-Seq.genomic.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 92546e51-b886-496b-bba9-48dcb0a3170f.rna_seq.genomic.gdc_realn.bam 6644124768 BAM genomic harmonized CPTAC3 5cdd6d97-5aff-4738-b0e7-68f802ad04e0 efb6461111b687314588d3d51b6e0bca { 'aliquot_tag': 'ALQ_b05023a1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02333.RNA-Seq.R1_L005.A C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 190405_UNC32-K00270_0161_BH55FNBBXY_GTTTCG_S23_L005_R1_001.fastq.gz 5243902991 FASTQ R1_L005 unaligned CPTAC3 ad623de6-4bb8-4f72-b04f-e7f94da8d988 3086688f01a040f68b976432547533ec { 'aliquot_tag': 'ALQ_f609dc0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02333.RNA-Seq.R1_L006.T C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L006_R1_001.fastq.gz 3144995123 FASTQ R1_L006 unaligned CPTAC3 72892728-c7f4-42f1-8fe3-06f5fc6421df 705934d244245ad5f6954d6ea5dfb338 { 'aliquot_tag': 'ALQ_b05023a1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02333.RNA-Seq.R1_.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 20210714_P1_B5_WB7988_plate1_S17_R1_001.fastq.gz 3469816618 FASTQ R1_ unaligned CPTAC3 89feabec-3dac-4706-b306-46630d0e875c c99feb497486e5eada3226c18c8bb7ef { 'aliquot_tag': 'ALQ_d496bfd6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02333.RNA-Seq.R1_.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 20210729_P3_A12_WB7988-Plate3_S12_R1_001.fastq.gz 8777483586 FASTQ R1_ unaligned CPTAC3 5e113935-285d-4294-ad03-07a5bd40dc5c 59a4a2a3439eedcc4bcd66a108e44174 { 'aliquot_tag': 'ALQ_3a98defa', 'gdc_sample_type': 'Primary Tumor' } -C3N-02333.RNA-Seq.R2_L005.A C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 190405_UNC32-K00270_0161_BH55FNBBXY_GTTTCG_S23_L005_R2_001.fastq.gz 5971542451 FASTQ R2_L005 unaligned CPTAC3 955ba682-5d4e-4d77-9609-41b8952797c1 16f05ae94f970927d65ea1f8106b1909 { 'aliquot_tag': 'ALQ_f609dc0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02333.RNA-Seq.R2_L006.T C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L006_R2_001.fastq.gz 3342191721 FASTQ R2_L006 unaligned CPTAC3 22f98aed-8f9d-4011-bbe4-2915a522dee4 f5584c9d4d15b614eb0f89feb73f8d46 { 'aliquot_tag': 'ALQ_b05023a1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02333.RNA-Seq.R2_.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 20210714_P1_B5_WB7988_plate1_S17_R2_001.fastq.gz 3892229327 FASTQ R2_ unaligned CPTAC3 e47fc112-fb5c-44f7-8d3f-5e2294e19e2f b0b12ff9d6fb650398ee8ac5a0686001 { 'aliquot_tag': 'ALQ_d496bfd6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02333.RNA-Seq.R2_.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 20210729_P3_A12_WB7988-Plate3_S12_R2_001.fastq.gz 9235596641 FASTQ R2_ unaligned CPTAC3 84efb119-d52a-4119-acca-4f55fd149f23 5eb40a282d9a04ad87db1f6096b95769 { 'aliquot_tag': 'ALQ_3a98defa', 'gdc_sample_type': 'Primary Tumor' } +C3N-02333.RNA-Seq.chimeric.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 e6ba6398-0e69-4261-9c15-f4807d526554.rna_seq.chimeric.gdc_realn.bam 39193800 BAM chimeric harmonized CPTAC3 e8b0c58d-bf6b-42c3-80d7-d7f16b1f2930 03f6e271bb0749259e8c14a7e75851f6 { 'aliquot_tag': 'ALQ_d496bfd6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02333.RNA-Seq.chimeric.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 3f14cfad-bd48-47b0-998a-03b0c9740925.rna_seq.chimeric.gdc_realn.bam 326425162 BAM chimeric harmonized CPTAC3 578c099e-cff1-4032-8986-d52e2268305f 17d43e46fa0bc67a360e54de84301cbd { 'aliquot_tag': 'ALQ_3a98defa', 'gdc_sample_type': 'Primary Tumor' } +C3N-02333.RNA-Seq.genomic.A.hg38 C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 b2f97cd0-3c08-4273-8661-b0ef48f636ea.rna_seq.genomic.gdc_realn.bam 11777210692 BAM genomic harmonized CPTAC3 e095e00a-69d0-439c-a001-3c96eb87c0d3 3d958f58f52ad8a32545892a6ff4ebe0 { 'aliquot_tag': 'ALQ_f609dc0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02333.RNA-Seq.genomic.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 92546e51-b886-496b-bba9-48dcb0a3170f.rna_seq.genomic.gdc_realn.bam 6644124768 BAM genomic harmonized CPTAC3 7597ce88-0d07-4537-b7f8-b9b1ec89c886 efb6461111b687314588d3d51b6e0bca { 'aliquot_tag': 'ALQ_b05023a1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02333.RNA-Seq.genomic.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 e6ba6398-0e69-4261-9c15-f4807d526554.rna_seq.genomic.gdc_realn.bam 7236103080 BAM genomic harmonized CPTAC3 ffa8cad3-712f-42b0-b319-151538a00a4a 36c9caa0f50b57c4301079724285d2ab { 'aliquot_tag': 'ALQ_d496bfd6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02333.RNA-Seq.genomic.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 3f14cfad-bd48-47b0-998a-03b0c9740925.rna_seq.genomic.gdc_realn.bam 15089170055 BAM genomic harmonized CPTAC3 41303f6a-4940-4541-905f-c93f0fef4336 fdf8999dcc476ace7c462731a36069b9 { 'aliquot_tag': 'ALQ_3a98defa', 'gdc_sample_type': 'Primary Tumor' } +C3N-02333.RNA-Seq.R1_L005.A C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 190405_UNC32-K00270_0161_BH55FNBBXY_GTTTCG_S23_L005_R1_001.fastq.gz 5243902991 FASTQ R1_L005 unaligned CPTAC3 ad623de6-4bb8-4f72-b04f-e7f94da8d988 3086688f01a040f68b976432547533ec { 'aliquot_tag': 'ALQ_f609dc0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02333.RNA-Seq.R1_L006.T C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L006_R1_001.fastq.gz 3144995123 FASTQ R1_L006 unaligned CPTAC3 72892728-c7f4-42f1-8fe3-06f5fc6421df 705934d244245ad5f6954d6ea5dfb338 { 'aliquot_tag': 'ALQ_b05023a1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02333.RNA-Seq.R2_L005.A C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 190405_UNC32-K00270_0161_BH55FNBBXY_GTTTCG_S23_L005_R2_001.fastq.gz 5971542451 FASTQ R2_L005 unaligned CPTAC3 955ba682-5d4e-4d77-9609-41b8952797c1 16f05ae94f970927d65ea1f8106b1909 { 'aliquot_tag': 'ALQ_f609dc0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02333.RNA-Seq.R2_L006.T C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L006_R2_001.fastq.gz 3342191721 FASTQ R2_L006 unaligned CPTAC3 22f98aed-8f9d-4011-bbe4-2915a522dee4 f5584c9d4d15b614eb0f89feb73f8d46 { 'aliquot_tag': 'ALQ_b05023a1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02333.RNA-Seq.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 20210714_P1_B5_WB7988_plate1_S17_R1_001.fastq.gz 3469816618 FASTQ unaligned CPTAC3 89feabec-3dac-4706-b306-46630d0e875c c99feb497486e5eada3226c18c8bb7ef +C3N-02333.RNA-Seq.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 20210714_P1_B5_WB7988_plate1_S17_R2_001.fastq.gz 3892229327 FASTQ unaligned CPTAC3 e47fc112-fb5c-44f7-8d3f-5e2294e19e2f b0b12ff9d6fb650398ee8ac5a0686001 +C3N-02333.RNA-Seq.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 20210729_P3_A12_WB7988-Plate3_S12_R1_001.fastq.gz 8777483586 FASTQ unaligned CPTAC3 5e113935-285d-4294-ad03-07a5bd40dc5c 59a4a2a3439eedcc4bcd66a108e44174 +C3N-02333.RNA-Seq.T C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 20210729_P3_A12_WB7988-Plate3_S12_R2_001.fastq.gz 9235596641 FASTQ unaligned CPTAC3 84efb119-d52a-4119-acca-4f55fd149f23 5eb40a282d9a04ad87db1f6096b95769 C3N-02333.RNA-Seq.transcriptome.A.hg38 C3N-02333 HNSCC RNA-Seq tissue_normal CPT0176790009 b2f97cd0-3c08-4273-8661-b0ef48f636ea.rna_seq.transcriptome.gdc_realn.bam 17329756012 BAM transcriptome harmonized CPTAC3 244f500d-caf2-4a55-bb33-9a96527cb07a 6dc97ed17cb62941f6ae2a65bc3b7b0b { 'aliquot_tag': 'ALQ_f609dc0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02333.RNA-Seq.transcriptome.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176770009 92546e51-b886-496b-bba9-48dcb0a3170f.rna_seq.transcriptome.gdc_realn.bam 8210592953 BAM transcriptome harmonized CPTAC3 99976435-5846-4dba-82b7-34e82db57282 0012c721d94c375047f66be3cb45cbe7 { 'aliquot_tag': 'ALQ_b05023a1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02333.RNA-Seq.transcriptome.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880011 e6ba6398-0e69-4261-9c15-f4807d526554.rna_seq.transcriptome.gdc_realn.bam 4410523443 BAM transcriptome harmonized CPTAC3 e27e6ec6-66c0-4b1b-8c56-27a44805b3f7 55aab5b5a176061b0b8cc1d2776ce97a { 'aliquot_tag': 'ALQ_d496bfd6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02333.RNA-Seq.transcriptome.T.hg38 C3N-02333 HNSCC RNA-Seq tumor CPT0176880013 3f14cfad-bd48-47b0-998a-03b0c9740925.rna_seq.transcriptome.gdc_realn.bam 8807366883 BAM transcriptome harmonized CPTAC3 25542630-ce49-4eb2-af1a-1756804b9d67 cd6ba8852aee88979979b67daa1625b2 { 'aliquot_tag': 'ALQ_3a98defa', 'gdc_sample_type': 'Primary Tumor' } C3N-02333.WGS.N C3N-02333 HNSCC WGS blood_normal CPT0176950002 CPT0176950002.WholeGenome.RP-1303.bam 69498639317 BAM aligned CPTAC3 53175b55-11f0-449c-84a3-3c75cdee3958 e6cbaf926e6695b69332eb700864a563 { 'aliquot_tag': 'ALQ_6748c839', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02333.WGS.N.hg38 C3N-02333 HNSCC WGS blood_normal CPT0176950002 3d3f0c39-ea2c-4909-9119-ebb58f071a66_wgs_gdc_realn.bam 101144654719 BAM harmonized CPTAC3 e55f1c27-beb4-4ef6-80f3-dbf092956a5a d4cb10a7a570c3f8d591a34b077b6e6d { 'aliquot_tag': 'ALQ_6748c839', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02333.WGS.T C3N-02333 HNSCC WGS tumor CPT0176770006 CPT0176770006.WholeGenome.RP-1303.bam 60643187335 BAM aligned CPTAC3 8eeb95d1-ebc9-417f-8ae5-789cf6eba881 11c0f06b520edf4c1d3fa0848ac45e8e { 'aliquot_tag': 'ALQ_20ef3e30', 'gdc_sample_type': 'Primary Tumor' } @@ -30817,13 +32941,16 @@ C3N-02337.MethArray.Green.T C3N-02337 UCEC Methylation Array tumor CPT0136280006 C3N-02337.MethArray.Red.T C3N-02337 UCEC Methylation Array tumor CPT0136280006 203561620043_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 ef4bfbd6-9245-4616-845d-a2bf4a1bda0e 6c9f95502de0952023869dd3ffb02975 { 'aliquot_tag': 'ALQ_763836a8', 'gdc_sample_type': 'Primary Tumor' } C3N-02337.miRNA-Seq.T C3N-02337 UCEC miRNA-Seq tumor CPT0136280009 190813_UNC32-K00270_0196_AH5MCWBBXY_TGACCA_S33_L002_R1_001.unaln.bam 288135954 BAM unaligned CPTAC3 fded1b9b-b12e-41ff-8a2f-598a443d5692 047ebd1a2429f0cf1a3706a5ec64d858 { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor' } C3N-02337.miRNA-Seq.T.hg38 C3N-02337 UCEC miRNA-Seq tumor CPT0136280009 d8d3cb65-05ab-42f7-bb37-247d39e36b46_mirnaseq_gdc_realn.bam 317575556 BAM harmonized CPTAC3 d0aa8602-d359-4302-a7fd-d94b89e3814f 2fbe35a4796246ca95342fe747f81124 { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor' } -C3N-02337.RNA-Seq.chimeric.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 61fb40a5-bf4e-4948-b8db-574910cf9f47.rna_seq.chimeric.gdc_realn.bam 53145265 BAM chimeric harmonized CPTAC3 3b6ba011-637b-4b23-8e65-b8f8578712fc 70cae6dd94d331548ca28b0c88fc54d1 { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor' } -C3N-02337.RNA-Seq.genomic.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 61fb40a5-bf4e-4948-b8db-574910cf9f47.rna_seq.genomic.gdc_realn.bam 8729260471 BAM genomic harmonized CPTAC3 79b67c14-61f2-4ea4-a8d6-75b14b10ef64 69b51d10962d2a0f2c26280735c41513 { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor' } -C3N-02337.RNA-Seq.R1_L002.T C3N-02337 UCEC RNA-Seq tumor CPT0136280009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATATGGAT-CTGTATTA_S6_L002_R1_001.fastq.gz 4476475233 FASTQ R1_L002 unaligned CPTAC3 935a992e-d60f-4c7e-9375-a7ebef77d4fd 5d6301f2bb690c07b63327b39866fa1c { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor' } -C3N-02337.RNA-Seq.R1_.T C3N-02337 UCEC RNA-Seq tumor CPT0136320001 20210714_P1_H5_WB7988_plate1_S88_R1_001.fastq.gz 5863422600 FASTQ R1_ unaligned CPTAC3 d76700f4-6e98-4388-adfe-130a7ce7458a b88e205225c0313fb711a58dedbdb73a { 'aliquot_tag': 'ALQ_69b0680f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02337.RNA-Seq.R2_L002.T C3N-02337 UCEC RNA-Seq tumor CPT0136280009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATATGGAT-CTGTATTA_S6_L002_R2_001.fastq.gz 4656672771 FASTQ R2_L002 unaligned CPTAC3 79a8ed7b-22ad-4bc6-bf48-ff8b25e8e214 84c221f686bafc609d5f30266833dd81 { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor' } -C3N-02337.RNA-Seq.R2_.T C3N-02337 UCEC RNA-Seq tumor CPT0136320001 20210714_P1_H5_WB7988_plate1_S88_R2_001.fastq.gz 6108208077 FASTQ R2_ unaligned CPTAC3 0fdeb0b4-185d-43e9-a228-3cc881bf9967 7642bd0e2fa6460124deadca219d0cb3 { 'aliquot_tag': 'ALQ_69b0680f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02337.RNA-Seq.transcriptome.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 61fb40a5-bf4e-4948-b8db-574910cf9f47.rna_seq.transcriptome.gdc_realn.bam 6762624540 BAM transcriptome harmonized CPTAC3 7f468a13-5f06-4216-8999-d3a463cb4acf bfb40d2ff12449641017d6944c859483 { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor' } +C3N-02337.RNA-Seq.chimeric.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 f973e423-b0cf-49d5-bdc7-743d5a46d995.rna_seq.chimeric.gdc_realn.bam 53132625 BAM chimeric harmonized CPTAC3 516c7930-a3b2-44b8-a24d-4070bc4a8fe3 8b63d0aa04f9d8c94638938154ca670c { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor' } +C3N-02337.RNA-Seq.chimeric.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136320001 18829653-9356-49f3-854b-c6fcfaaaed44.rna_seq.chimeric.gdc_realn.bam 225088005 BAM chimeric harmonized CPTAC3 24451364-d28d-453c-ad82-64c8a09efae9 25d832ebd85139cdd3470aa053c4b48f { 'aliquot_tag': 'ALQ_69b0680f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02337.RNA-Seq.genomic.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 f973e423-b0cf-49d5-bdc7-743d5a46d995.rna_seq.genomic.gdc_realn.bam 8730445667 BAM genomic harmonized CPTAC3 48c6f2a4-43d7-4554-b7d3-e4601cf86175 afc13f07909e3e484a3ebf414ec82e11 { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor' } +C3N-02337.RNA-Seq.genomic.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136320001 18829653-9356-49f3-854b-c6fcfaaaed44.rna_seq.genomic.gdc_realn.bam 9936473736 BAM genomic harmonized CPTAC3 6d3af1d2-b810-4a18-8a49-d2ad5cda5012 99e76046f25d1afe7271d29243777e4f { 'aliquot_tag': 'ALQ_69b0680f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02337.RNA-Seq.R1_L002.T C3N-02337 UCEC RNA-Seq tumor CPT0136280009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATATGGAT-CTGTATTA_S6_L002_R1_001.fastq.gz 4476475233 FASTQ R1_L002 unaligned CPTAC3 935a992e-d60f-4c7e-9375-a7ebef77d4fd 5d6301f2bb690c07b63327b39866fa1c { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02337.RNA-Seq.R2_L002.T C3N-02337 UCEC RNA-Seq tumor CPT0136280009 190715_UNC31-K00269_0232_BH7H7CBBXY_ATATGGAT-CTGTATTA_S6_L002_R2_001.fastq.gz 4656672771 FASTQ R2_L002 unaligned CPTAC3 79a8ed7b-22ad-4bc6-bf48-ff8b25e8e214 84c221f686bafc609d5f30266833dd81 { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02337.RNA-Seq.T C3N-02337 UCEC RNA-Seq tumor CPT0136320001 20210714_P1_H5_WB7988_plate1_S88_R1_001.fastq.gz 5863422600 FASTQ unaligned CPTAC3 d76700f4-6e98-4388-adfe-130a7ce7458a b88e205225c0313fb711a58dedbdb73a +C3N-02337.RNA-Seq.T C3N-02337 UCEC RNA-Seq tumor CPT0136320001 20210714_P1_H5_WB7988_plate1_S88_R2_001.fastq.gz 6108208077 FASTQ unaligned CPTAC3 0fdeb0b4-185d-43e9-a228-3cc881bf9967 7642bd0e2fa6460124deadca219d0cb3 +C3N-02337.RNA-Seq.transcriptome.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136280009 f973e423-b0cf-49d5-bdc7-743d5a46d995.rna_seq.transcriptome.gdc_realn.bam 7736180459 BAM transcriptome harmonized CPTAC3 903be311-5851-4588-947b-4eb071d45a88 3374e2066c77e7335563e37fe3974c5c { 'aliquot_tag': 'ALQ_e6872b39', 'gdc_sample_type': 'Primary Tumor' } +C3N-02337.RNA-Seq.transcriptome.T.hg38 C3N-02337 UCEC RNA-Seq tumor CPT0136320001 18829653-9356-49f3-854b-c6fcfaaaed44.rna_seq.transcriptome.gdc_realn.bam 4531382449 BAM transcriptome harmonized CPTAC3 3ce8dfb8-7bea-4c37-81f6-630c42ba4021 90a8cf7d808aed38b051ff07225579d2 { 'aliquot_tag': 'ALQ_69b0680f', 'gdc_sample_type': 'Primary Tumor' } C3N-02337.WGS.N C3N-02337 UCEC WGS blood_normal CPT0136390002 CPT0136390002.WholeGenome.RP-1303.bam 75885781858 BAM aligned CPTAC3 775129b4-c389-4718-a899-0aa07f12cd3f 679115b5ce0c315d835a235ab9d953c3 { 'aliquot_tag': 'ALQ_876908a4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02337.WGS.N.hg38 C3N-02337 UCEC WGS blood_normal CPT0136390002 a9d85cf4-a820-49ff-8663-0d9279768a5f_wgs_gdc_realn.bam 111122777328 BAM harmonized CPTAC3 4f9d686b-75ee-4d95-9cb4-8adf3904769e 8ef2f70feeb73ccda53d4473393944d7 { 'aliquot_tag': 'ALQ_876908a4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02337.WGS.T C3N-02337 UCEC WGS tumor CPT0136280006 CPT0136280006.WholeGenome.RP-1303.bam 60970978852 BAM aligned CPTAC3 ab5f89f0-3fd2-4f19-a3ac-98e1d6dbcef9 af40ec1fa73e4c0e4b86e6c4d550c64c { 'aliquot_tag': 'ALQ_763836a8', 'gdc_sample_type': 'Primary Tumor' } @@ -30836,11 +32963,11 @@ C3N-02338.MethArray.Green.T C3N-02338 CCRCC Methylation Array tumor CPT013646000 C3N-02338.MethArray.Red.T C3N-02338 CCRCC Methylation Array tumor CPT0136460009 203219670117_R08C01_Red.idat 13676226 IDAT Red NA CPTAC3 cd660857-8398-441c-bcc5-455ddeecaead 1b6618a3696d94f742d5dbeae18c4efe { 'aliquot_tag': 'ALQ_8fee7645', 'gdc_sample_type': 'Primary Tumor' } C3N-02338.miRNA-Seq.T C3N-02338 CCRCC miRNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0176_AHYGLVBBXX_CGGAAT_S37_L005_R1_001.unaln.bam 222914173 BAM unaligned CPTAC3 3ab32028-a93c-4cd9-bef0-3fba2671e2be 9a12c3d76eea0c17db7443741d1f8e55 { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor' } C3N-02338.miRNA-Seq.T.hg38 C3N-02338 CCRCC miRNA-Seq tumor CPT0136460006 46b8c0aa-e140-4ff9-a6df-e9922f511aab_mirnaseq_gdc_realn.bam 239500396 BAM harmonized CPTAC3 538373ec-fb31-4776-9a5e-31e50e5f9902 91b097e5310b9d8c3e19731352f588f3 { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02338.RNA-Seq.chimeric.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 a2742c8a-e2f6-4069-ba70-a672e5089968.rna_seq.chimeric.gdc_realn.bam 28376165 BAM chimeric harmonized CPTAC3 7c88d5e0-d0f5-4162-be0b-0d89191843ff 3b00d51b7928110bcfd8d478896a7aec { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02338.RNA-Seq.genomic.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 a2742c8a-e2f6-4069-ba70-a672e5089968.rna_seq.genomic.gdc_realn.bam 7717759095 BAM genomic harmonized CPTAC3 b684ef4c-3b20-49f1-9917-9bf332d2e44d 97a114dee99ab0087c2cb1d40ad345e9 { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02338.RNA-Seq.R1_L005.T C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0177_BH32KTBBXY_AGTCAA_S19_L005_R1_001.fastq.gz 3666899684 FASTQ R1_L005 unaligned CPTAC3 c1f53a89-c62f-4439-ac6c-2e44984b1967 3e75ca9d036e2c338369ffc7a0d23de0 { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02338.RNA-Seq.R2_L005.T C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0177_BH32KTBBXY_AGTCAA_S19_L005_R2_001.fastq.gz 3754242208 FASTQ R2_L005 unaligned CPTAC3 c6b8067a-67ef-42fb-ab92-7c368e2c8d6e 67fac81e4261f4b05b5c30bf55d54e76 { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02338.RNA-Seq.transcriptome.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 a2742c8a-e2f6-4069-ba70-a672e5089968.rna_seq.transcriptome.gdc_realn.bam 9229750871 BAM transcriptome harmonized CPTAC3 7eab7de4-936b-4c8f-b589-f4bb47c7c3f3 58593147c63502b962ac6c75ecf45120 { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02338.RNA-Seq.chimeric.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 16ff2e77-9bc5-4485-b523-c5fa9eefb399.rna_seq.chimeric.gdc_realn.bam 28372164 BAM chimeric harmonized CPTAC3 ab65e951-39e7-47a4-b11e-110e036035fb 8bb67955ade19f6d0cb6e0fc9560b669 { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02338.RNA-Seq.genomic.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 16ff2e77-9bc5-4485-b523-c5fa9eefb399.rna_seq.genomic.gdc_realn.bam 7719111931 BAM genomic harmonized CPTAC3 8ba8cad6-81b3-4dc4-a80b-4c0047a6e358 d883ac04f29205f4fcb0de340ccbec36 { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02338.RNA-Seq.R1_L005.T C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0177_BH32KTBBXY_AGTCAA_S19_L005_R1_001.fastq.gz 3666899684 FASTQ R1_L005 unaligned CPTAC3 c1f53a89-c62f-4439-ac6c-2e44984b1967 3e75ca9d036e2c338369ffc7a0d23de0 { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02338.RNA-Seq.R2_L005.T C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 190108_UNC31-K00269_0177_BH32KTBBXY_AGTCAA_S19_L005_R2_001.fastq.gz 3754242208 FASTQ R2_L005 unaligned CPTAC3 c6b8067a-67ef-42fb-ab92-7c368e2c8d6e 67fac81e4261f4b05b5c30bf55d54e76 { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02338.RNA-Seq.transcriptome.T.hg38 C3N-02338 CCRCC RNA-Seq tumor CPT0136460006 16ff2e77-9bc5-4485-b523-c5fa9eefb399.rna_seq.transcriptome.gdc_realn.bam 10402922388 BAM transcriptome harmonized CPTAC3 ffdd694b-5db3-4f71-80d2-e6cc4a2b6b3b c35b465c86e73fddbe7db30563f1651a { 'aliquot_tag': 'ALQ_1f516bd4', 'gdc_sample_type': 'Primary Tumor' } C3N-02338.WGS.N C3N-02338 CCRCC WGS blood_normal CPT0136570002 CPT0136570002.WholeGenome.RP-1303.bam 79900866056 BAM aligned CPTAC3 12204de5-f10d-4431-856d-1ce4ab1d8ee3 b00ca4b359a9c33545c4542cd6267642 { 'aliquot_tag': 'ALQ_ee0055d8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02338.WGS.N.hg38 C3N-02338 CCRCC WGS blood_normal CPT0136570002 da606039-6f4f-4d22-bb19-994cd41fddcd_wgs_gdc_realn.bam 118338303050 BAM harmonized CPTAC3 3d858ed2-3ad5-4890-b31e-51250b345ed3 7cf1f30ad17cf1dd91792e42a8a3b81c { 'aliquot_tag': 'ALQ_ee0055d8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02338.WGS.T C3N-02338 CCRCC WGS tumor CPT0136460009 CPT0136460009.WholeGenome.RP-1303.bam 104553360085 BAM aligned CPTAC3 2fb14ff9-2978-4d24-8a9e-a9a41baf06bd 6213c84f012675b5a67debf3eafc7b6e { 'aliquot_tag': 'ALQ_8fee7645', 'gdc_sample_type': 'Primary Tumor' } @@ -30861,10 +32988,10 @@ C3N-02339.RNA-Seq.chimeric.A.hg38 C3N-02339 LSCC RNA-Seq tissue_normal CPT013666 C3N-02339.RNA-Seq.chimeric.T.hg38 C3N-02339 LSCC RNA-Seq tumor CPT0136640013 b79ab29f-8cd6-484e-adbe-34cea4588145.rna_seq.chimeric.gdc_realn.bam 20302205 BAM chimeric harmonized CPTAC3 e30e3725-ed78-4143-8f01-f173e81b354b 8f49afcfbfc4731635261095cc71c6ba { 'aliquot_tag': 'ALQ_41285c71', 'gdc_sample_type': 'Primary Tumor' } C3N-02339.RNA-Seq.genomic.A.hg38 C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 66cc100c-5c8e-4ee8-8670-155031da678e.rna_seq.genomic.gdc_realn.bam 8091103107 BAM genomic harmonized CPTAC3 85b39859-53d5-432e-8de3-6414ba9a8c2d 19b89bac003d271e572f0a8172c6c7c1 { 'aliquot_tag': 'ALQ_c226d74e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02339.RNA-Seq.genomic.T.hg38 C3N-02339 LSCC RNA-Seq tumor CPT0136640013 b79ab29f-8cd6-484e-adbe-34cea4588145.rna_seq.genomic.gdc_realn.bam 8098789573 BAM genomic harmonized CPTAC3 60921e80-aff2-42e4-a08e-cd21d63f97bf ade0b4534f4b94dfda2326e1296b8f2a { 'aliquot_tag': 'ALQ_41285c71', 'gdc_sample_type': 'Primary Tumor' } -C3N-02339.RNA-Seq.R1_L003.T C3N-02339 LSCC RNA-Seq tumor CPT0136640013 180926_UNC31-K00269_0155_AHWN7WBBXX_ATCACG_S9_L003_R1_001.fastq.gz 3354523366 FASTQ R1_L003 unaligned CPTAC3 5e588c16-67a3-4ac9-b85f-691be4bc581d a9ebdb16b7c3affe8d3d0ffb63d5ff44 { 'aliquot_tag': 'ALQ_41285c71', 'gdc_sample_type': 'Primary Tumor' } -C3N-02339.RNA-Seq.R1_L008.A C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3654425055 FASTQ R1_L008 unaligned CPTAC3 085194c0-53be-43de-9f7b-6d3fd07c01b0 2f2b5ecbff032014315c15e1b05dfdbe { 'aliquot_tag': 'ALQ_c226d74e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02339.RNA-Seq.R2_L003.T C3N-02339 LSCC RNA-Seq tumor CPT0136640013 180926_UNC31-K00269_0155_AHWN7WBBXX_ATCACG_S9_L003_R2_001.fastq.gz 3455484024 FASTQ R2_L003 unaligned CPTAC3 14f12e3e-32fa-48db-b3c9-e3127ffc2ba2 86035e53d20fb89d08ecb46bd0d2c2f9 { 'aliquot_tag': 'ALQ_41285c71', 'gdc_sample_type': 'Primary Tumor' } -C3N-02339.RNA-Seq.R2_L008.A C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L008_R2_001.fastq.gz 3797002321 FASTQ R2_L008 unaligned CPTAC3 58917e34-8967-443d-9641-6ea88154f9cb 83bb40da7d62fc557458b667081583ce { 'aliquot_tag': 'ALQ_c226d74e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02339.RNA-Seq.R1_L003.T C3N-02339 LSCC RNA-Seq tumor CPT0136640013 180926_UNC31-K00269_0155_AHWN7WBBXX_ATCACG_S9_L003_R1_001.fastq.gz 3354523366 FASTQ R1_L003 unaligned CPTAC3 5e588c16-67a3-4ac9-b85f-691be4bc581d a9ebdb16b7c3affe8d3d0ffb63d5ff44 { 'aliquot_tag': 'ALQ_41285c71', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02339.RNA-Seq.R1_L008.A C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L008_R1_001.fastq.gz 3654425055 FASTQ R1_L008 unaligned CPTAC3 085194c0-53be-43de-9f7b-6d3fd07c01b0 2f2b5ecbff032014315c15e1b05dfdbe { 'aliquot_tag': 'ALQ_c226d74e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-02339.RNA-Seq.R2_L003.T C3N-02339 LSCC RNA-Seq tumor CPT0136640013 180926_UNC31-K00269_0155_AHWN7WBBXX_ATCACG_S9_L003_R2_001.fastq.gz 3455484024 FASTQ R2_L003 unaligned CPTAC3 14f12e3e-32fa-48db-b3c9-e3127ffc2ba2 86035e53d20fb89d08ecb46bd0d2c2f9 { 'aliquot_tag': 'ALQ_41285c71', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02339.RNA-Seq.R2_L008.A C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L008_R2_001.fastq.gz 3797002321 FASTQ R2_L008 unaligned CPTAC3 58917e34-8967-443d-9641-6ea88154f9cb 83bb40da7d62fc557458b667081583ce { 'aliquot_tag': 'ALQ_c226d74e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-02339.RNA-Seq.transcriptome.A.hg38 C3N-02339 LSCC RNA-Seq tissue_normal CPT0136660009 66cc100c-5c8e-4ee8-8670-155031da678e.rna_seq.transcriptome.gdc_realn.bam 9304743474 BAM transcriptome harmonized CPTAC3 9d54baf0-fa01-43ad-b803-236591c1d0cb 5edc6da0104abac0b234710e5c488b4b { 'aliquot_tag': 'ALQ_c226d74e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02339.RNA-Seq.transcriptome.T.hg38 C3N-02339 LSCC RNA-Seq tumor CPT0136640013 b79ab29f-8cd6-484e-adbe-34cea4588145.rna_seq.transcriptome.gdc_realn.bam 9553570576 BAM transcriptome harmonized CPTAC3 359c0391-a5e0-40c5-9c37-d7b6c50b2688 14e89fc636ce4828fbfc4a527881547c { 'aliquot_tag': 'ALQ_41285c71', 'gdc_sample_type': 'Primary Tumor' } C3N-02339.WGS.A C3N-02339 LSCC WGS tissue_normal CPT0136660006 CPT0136660006.WholeGenome.RP-1303.bam 61360540853 BAM aligned CPTAC3 41658b62-ed56-40af-bc0d-7b268ba8b4e0 d13ac77344120047de38c9b9844cd6aa { 'aliquot_tag': 'ALQ_5299cadf', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -30883,13 +33010,16 @@ C3N-02372.MethArray.Green.T C3N-02372 UCEC Methylation Array tumor CPT0137140011 C3N-02372.MethArray.Red.T C3N-02372 UCEC Methylation Array tumor CPT0137140011 203561450102_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 e0efc784-fd53-451f-93cd-7e6e2d104602 a4601407c1e47ba14e9e58e992b092be { 'aliquot_tag': 'ALQ_14540651', 'gdc_sample_type': 'Primary Tumor' } C3N-02372.miRNA-Seq.T C3N-02372 UCEC miRNA-Seq tumor CPT0137140018 190508_UNC31-K00269_0215_BH7FYKBBXY_CTCAGA_S40_L004_R1_001.unaln.bam 250876986 BAM unaligned CPTAC3 3de97036-a852-4fb6-88f8-40b255875090 96b0751292822e10e21fa7589ce35199 { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor' } C3N-02372.miRNA-Seq.T.hg38 C3N-02372 UCEC miRNA-Seq tumor CPT0137140018 d8fe948e-f60f-46a2-a2da-f7f9eb94cdf6_mirnaseq_gdc_realn.bam 286912787 BAM harmonized CPTAC3 084f09f8-8f3a-4950-a490-e0eeb2e7d329 78028f9cb7ea9deff48282f9c9a4c97b { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02372.RNA-Seq.chimeric.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 d21443cf-5da5-4526-982d-2caebb8546d9.rna_seq.chimeric.gdc_realn.bam 43790801 BAM chimeric harmonized CPTAC3 8b73c3d7-b7d7-4a91-8b3a-e6e33b35f60a 9447ff201394d0e19538a8d54340e546 { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02372.RNA-Seq.genomic.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 d21443cf-5da5-4526-982d-2caebb8546d9.rna_seq.genomic.gdc_realn.bam 9395853144 BAM genomic harmonized CPTAC3 641359c2-76f1-4896-92ac-aee8239a8a67 3731be3e4cb3b992d4d8b6cb372128aa { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02372.RNA-Seq.R1_L001.T C3N-02372 UCEC RNA-Seq tumor CPT0137140018 190523_UNC32-K00270_0176_BH7CW7BBXY_TCTGTTGG-TCGAATGG_S4_L001_R1_001.fastq.gz 4203360368 FASTQ R1_L001 unaligned CPTAC3 3751fab9-a9a6-4244-b11a-4b5ef741449c 418027aa4a8e03a01d02e07b9357e1aa { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02372.RNA-Seq.R1_.T C3N-02372 UCEC RNA-Seq tumor CPT0137180001 20210714_P1_F12_WB7988_plate1_S71_R1_001.fastq.gz 5767955157 FASTQ R1_ unaligned CPTAC3 ddf2ac99-8b99-47ba-8e8a-e4ef4387f7f0 7ef4aca9786631caec5e3e854b0165d4 { 'aliquot_tag': 'ALQ_c8bfda11', 'gdc_sample_type': 'Primary Tumor' } -C3N-02372.RNA-Seq.R2_L001.T C3N-02372 UCEC RNA-Seq tumor CPT0137140018 190523_UNC32-K00270_0176_BH7CW7BBXY_TCTGTTGG-TCGAATGG_S4_L001_R2_001.fastq.gz 4921461291 FASTQ R2_L001 unaligned CPTAC3 d7bd6052-7dc7-4b81-8df5-4e0b455c2f11 4b008f83fb2adedb2ebc73c5f4e32a14 { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02372.RNA-Seq.R2_.T C3N-02372 UCEC RNA-Seq tumor CPT0137180001 20210714_P1_F12_WB7988_plate1_S71_R2_001.fastq.gz 6051316002 FASTQ R2_ unaligned CPTAC3 bfd2c27c-8e33-484a-b097-b02f237d85e5 72f179a5c8020b96764fc258709cc468 { 'aliquot_tag': 'ALQ_c8bfda11', 'gdc_sample_type': 'Primary Tumor' } -C3N-02372.RNA-Seq.transcriptome.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 d21443cf-5da5-4526-982d-2caebb8546d9.rna_seq.transcriptome.gdc_realn.bam 9225914849 BAM transcriptome harmonized CPTAC3 707b4d36-9739-410a-b140-53204c62e0b8 08fce4c977a9f36e789e37e7f7216a2a { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02372.RNA-Seq.chimeric.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 9ed3f7e8-53e2-4471-9271-0889f88a6a85.rna_seq.chimeric.gdc_realn.bam 43779997 BAM chimeric harmonized CPTAC3 889fe4e0-75aa-4665-b1f8-a91c0a9e1a0c 6fc2bb8150bed02967b16763f66d1806 { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02372.RNA-Seq.chimeric.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137180001 06935987-c6ec-44df-bc6e-68fe78351f3b.rna_seq.chimeric.gdc_realn.bam 187106011 BAM chimeric harmonized CPTAC3 2915019b-0061-49c8-8d05-e7ca7c598679 e32f49e16f9d0adac8a7519695e5e26c { 'aliquot_tag': 'ALQ_c8bfda11', 'gdc_sample_type': 'Primary Tumor' } +C3N-02372.RNA-Seq.genomic.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 9ed3f7e8-53e2-4471-9271-0889f88a6a85.rna_seq.genomic.gdc_realn.bam 9397145679 BAM genomic harmonized CPTAC3 17df60ca-9915-4c4e-88ea-c9ead2f0c800 6705f95c6f802b0c1fe84813cf13e12a { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02372.RNA-Seq.genomic.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137180001 06935987-c6ec-44df-bc6e-68fe78351f3b.rna_seq.genomic.gdc_realn.bam 9399482126 BAM genomic harmonized CPTAC3 e695266e-3d5c-40a2-b622-c9b6f9a3876c 53db58ae0d168e6fb5f085fd3faa0754 { 'aliquot_tag': 'ALQ_c8bfda11', 'gdc_sample_type': 'Primary Tumor' } +C3N-02372.RNA-Seq.R1_L001.T C3N-02372 UCEC RNA-Seq tumor CPT0137140018 190523_UNC32-K00270_0176_BH7CW7BBXY_TCTGTTGG-TCGAATGG_S4_L001_R1_001.fastq.gz 4203360368 FASTQ R1_L001 unaligned CPTAC3 3751fab9-a9a6-4244-b11a-4b5ef741449c 418027aa4a8e03a01d02e07b9357e1aa { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02372.RNA-Seq.R2_L001.T C3N-02372 UCEC RNA-Seq tumor CPT0137140018 190523_UNC32-K00270_0176_BH7CW7BBXY_TCTGTTGG-TCGAATGG_S4_L001_R2_001.fastq.gz 4921461291 FASTQ R2_L001 unaligned CPTAC3 d7bd6052-7dc7-4b81-8df5-4e0b455c2f11 4b008f83fb2adedb2ebc73c5f4e32a14 { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02372.RNA-Seq.T C3N-02372 UCEC RNA-Seq tumor CPT0137180001 20210714_P1_F12_WB7988_plate1_S71_R1_001.fastq.gz 5767955157 FASTQ unaligned CPTAC3 ddf2ac99-8b99-47ba-8e8a-e4ef4387f7f0 7ef4aca9786631caec5e3e854b0165d4 +C3N-02372.RNA-Seq.T C3N-02372 UCEC RNA-Seq tumor CPT0137180001 20210714_P1_F12_WB7988_plate1_S71_R2_001.fastq.gz 6051316002 FASTQ unaligned CPTAC3 bfd2c27c-8e33-484a-b097-b02f237d85e5 72f179a5c8020b96764fc258709cc468 +C3N-02372.RNA-Seq.transcriptome.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137140018 9ed3f7e8-53e2-4471-9271-0889f88a6a85.rna_seq.transcriptome.gdc_realn.bam 10475640335 BAM transcriptome harmonized CPTAC3 7e2eed04-0dc2-4059-9edf-40c38836753a a58aaf58fafd93c6bc578cdae199d36d { 'aliquot_tag': 'ALQ_6d88bef5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02372.RNA-Seq.transcriptome.T.hg38 C3N-02372 UCEC RNA-Seq tumor CPT0137180001 06935987-c6ec-44df-bc6e-68fe78351f3b.rna_seq.transcriptome.gdc_realn.bam 7152718012 BAM transcriptome harmonized CPTAC3 0d3206d9-3650-4905-ab8f-0da7fa1faa4c bd39cf203167d0fbb5a17518a38c3546 { 'aliquot_tag': 'ALQ_c8bfda11', 'gdc_sample_type': 'Primary Tumor' } C3N-02372.WGS.N C3N-02372 UCEC WGS blood_normal CPT0137260002 CPT0137260002.WholeGenome.RP-1303.bam 71370609558 BAM aligned CPTAC3 0f256c42-f149-44d4-986d-45e084a1ae89 029c3b9c967637073997a611e8de09c4 { 'aliquot_tag': 'ALQ_68124764', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02372.WGS.N.hg38 C3N-02372 UCEC WGS blood_normal CPT0137260002 081a4e84-b6f6-4f0b-b704-d354949b4730_wgs_gdc_realn.bam 103395445838 BAM harmonized CPTAC3 dc554ad1-c4ea-4b23-9a85-02ac88c77398 eb8cd01be3ef43e4069a9353d3f1292f { 'aliquot_tag': 'ALQ_68124764', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02372.WGS.T C3N-02372 UCEC WGS tumor CPT0137140011 CPT0137140011.WholeGenome.RP-1303.bam 91188488328 BAM aligned CPTAC3 d5b34a42-6bce-46c8-aaf0-b86ace2f5333 1c6bf5c15316d38116b744695b155e92 { 'aliquot_tag': 'ALQ_14540651', 'gdc_sample_type': 'Primary Tumor' } @@ -30908,12 +33038,12 @@ C3N-02374.miRNA-Seq.T C3N-02374 LSCC miRNA-Seq tumor CPT0146380007 181219_UNC31- C3N-02374.miRNA-Seq.T.hg38 C3N-02374 LSCC miRNA-Seq tumor CPT0146380007 25dcf1a0-f5c6-45f3-b774-7fe9ff95b65c_mirnaseq_gdc_realn.bam 246248803 BAM harmonized CPTAC3 4f927a2c-e35b-43d5-a112-4e281a1b396a 25d257e741b23b6a69484825d9b937ed { 'aliquot_tag': 'ALQ_c0a6dc82', 'gdc_sample_type': 'Primary Tumor' } C3N-02374.RNA-Seq.chimeric.A.hg38 C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 6c657e27-3eb5-4cdd-a312-0cfbac01bb71.rna_seq.chimeric.gdc_realn.bam 26299032 BAM chimeric harmonized CPTAC3 de85c4e5-1913-45c5-a79b-7cfa2c1e0568 28698e5f9157102ff61586cf8b4f90e9 { 'aliquot_tag': 'ALQ_a6b8afc', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02374.RNA-Seq.chimeric.T.hg38 C3N-02374 LSCC RNA-Seq tumor CPT0146380007 f2b5ad42-a662-4aa1-98c8-6a33a8483887.rna_seq.chimeric.gdc_realn.bam 17449109 BAM chimeric harmonized CPTAC3 8cb83148-175e-483e-9bc5-1ab9a6cb61db ef792bbb57db2408d6839b6eb01cf715 { 'aliquot_tag': 'ALQ_c0a6dc82', 'gdc_sample_type': 'Primary Tumor' } -C3N-02374.RNA-Seq.genomic.A.hg38 C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 6c657e27-3eb5-4cdd-a312-0cfbac01bb71.rna_seq.genomic.gdc_realn.bam 7694840309 BAM genomic harmonized CPTAC3 ce2fa655-3481-4901-a568-7d84121526c3 ee17a83aa72523e4a11d6bb0673b7705 { 'aliquot_tag': 'ALQ_a6b8afc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02374.RNA-Seq.genomic.T.hg38 C3N-02374 LSCC RNA-Seq tumor CPT0146380007 f2b5ad42-a662-4aa1-98c8-6a33a8483887.rna_seq.genomic.gdc_realn.bam 6542059473 BAM genomic harmonized CPTAC3 57f23878-5139-4522-b1ec-b594c13da9ac 90933f18ce798731684a2df8dcb8b79d { 'aliquot_tag': 'ALQ_c0a6dc82', 'gdc_sample_type': 'Primary Tumor' } -C3N-02374.RNA-Seq.R1_L001.T C3N-02374 LSCC RNA-Seq tumor CPT0146380007 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 2744161249 FASTQ R1_L001 unaligned CPTAC3 d4f2b044-07e4-40e4-bece-b1b724a8eb73 e3651f8333901c9e9a03a512cc468c2c { 'aliquot_tag': 'ALQ_c0a6dc82', 'gdc_sample_type': 'Primary Tumor' } -C3N-02374.RNA-Seq.R1_L005.A C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3462101571 FASTQ R1_L005 unaligned CPTAC3 a627c7dd-6641-4525-b9ab-9eb41bd0430c b6d976b06392bd404ac3598ea3a79f6c { 'aliquot_tag': 'ALQ_a6b8afc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02374.RNA-Seq.R2_L001.T C3N-02374 LSCC RNA-Seq tumor CPT0146380007 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 2942859559 FASTQ R2_L001 unaligned CPTAC3 bda29cc6-f418-4288-9d26-5aab3892b4df 283cfdd925550c28a4054ccf7114ff94 { 'aliquot_tag': 'ALQ_c0a6dc82', 'gdc_sample_type': 'Primary Tumor' } -C3N-02374.RNA-Seq.R2_L005.A C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3624979527 FASTQ R2_L005 unaligned CPTAC3 930774a1-6b67-4e6c-a11f-d6065ffa6d94 bd1d861413686c6627650395de905e19 { 'aliquot_tag': 'ALQ_a6b8afc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02374.RNA-Seq.genomic.A.hg38 C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 6c657e27-3eb5-4cdd-a312-0cfbac01bb71.rna_seq.genomic.gdc_realn.bam 7694840309 BAM genomic harmonized CPTAC3 602a1756-ea03-474f-960b-7dd3a582415c ee17a83aa72523e4a11d6bb0673b7705 { 'aliquot_tag': 'ALQ_a6b8afc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02374.RNA-Seq.genomic.T.hg38 C3N-02374 LSCC RNA-Seq tumor CPT0146380007 f2b5ad42-a662-4aa1-98c8-6a33a8483887.rna_seq.genomic.gdc_realn.bam 6542059473 BAM genomic harmonized CPTAC3 b493c152-9fdf-4ff7-87c7-546db273077b 90933f18ce798731684a2df8dcb8b79d { 'aliquot_tag': 'ALQ_c0a6dc82', 'gdc_sample_type': 'Primary Tumor' } +C3N-02374.RNA-Seq.R1_L001.T C3N-02374 LSCC RNA-Seq tumor CPT0146380007 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L001_R1_001.fastq.gz 2744161249 FASTQ R1_L001 unaligned CPTAC3 d4f2b044-07e4-40e4-bece-b1b724a8eb73 e3651f8333901c9e9a03a512cc468c2c { 'aliquot_tag': 'ALQ_c0a6dc82', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02374.RNA-Seq.R1_L005.A C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GATCAG_S19_L005_R1_001.fastq.gz 3462101571 FASTQ R1_L005 unaligned CPTAC3 a627c7dd-6641-4525-b9ab-9eb41bd0430c b6d976b06392bd404ac3598ea3a79f6c { 'aliquot_tag': 'ALQ_a6b8afc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02374.RNA-Seq.R2_L001.T C3N-02374 LSCC RNA-Seq tumor CPT0146380007 180926_UNC31-K00269_0155_AHWN7WBBXX_GTTTCG_S4_L001_R2_001.fastq.gz 2942859559 FASTQ R2_L001 unaligned CPTAC3 bda29cc6-f418-4288-9d26-5aab3892b4df 283cfdd925550c28a4054ccf7114ff94 { 'aliquot_tag': 'ALQ_c0a6dc82', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02374.RNA-Seq.R2_L005.A C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 180926_UNC31-K00269_0155_AHWN7WBBXX_GATCAG_S19_L005_R2_001.fastq.gz 3624979527 FASTQ R2_L005 unaligned CPTAC3 930774a1-6b67-4e6c-a11f-d6065ffa6d94 bd1d861413686c6627650395de905e19 { 'aliquot_tag': 'ALQ_a6b8afc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-02374.RNA-Seq.transcriptome.A.hg38 C3N-02374 LSCC RNA-Seq tissue_normal CPT0146400009 6c657e27-3eb5-4cdd-a312-0cfbac01bb71.rna_seq.transcriptome.gdc_realn.bam 9018643377 BAM transcriptome harmonized CPTAC3 12139c43-8818-4296-af56-63b818e84a49 36f1da52eadd04281a32e5654e7d18c0 { 'aliquot_tag': 'ALQ_a6b8afc', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02374.RNA-Seq.transcriptome.T.hg38 C3N-02374 LSCC RNA-Seq tumor CPT0146380007 f2b5ad42-a662-4aa1-98c8-6a33a8483887.rna_seq.transcriptome.gdc_realn.bam 8458341995 BAM transcriptome harmonized CPTAC3 8b9125b3-752f-4a71-b0ca-204f0dd71985 e82b31f1e990e92884fd26adb2f6ba2b { 'aliquot_tag': 'ALQ_c0a6dc82', 'gdc_sample_type': 'Primary Tumor' } C3N-02374.WGS.A C3N-02374 LSCC WGS tissue_normal CPT0146400006 CPT0146400006.WholeGenome.RP-1303.bam 60953607452 BAM aligned CPTAC3 316ec992-18bc-4aff-b20f-a8f65e085658 9b32995a8497bec7c7b84935f69bddd6 { 'aliquot_tag': 'ALQ_9ad4976d', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -30938,12 +33068,12 @@ C3N-02375.miRNA-Seq.T C3N-02375 LSCC miRNA-Seq tumor CPT0146480007 181219_UNC31- C3N-02375.miRNA-Seq.T.hg38 C3N-02375 LSCC miRNA-Seq tumor CPT0146480007 2055d83a-87e0-41fa-bfe2-1992c0317442_mirnaseq_gdc_realn.bam 197076046 BAM harmonized CPTAC3 0464945e-bd9d-4d5e-8f73-82b4b8b866d3 863b13c660ec57172ba0e04630d1b74b { 'aliquot_tag': 'ALQ_dda3ec3a', 'gdc_sample_type': 'Primary Tumor' } C3N-02375.RNA-Seq.chimeric.A.hg38 C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 fd869326-ee90-4065-81ab-d38a3c0d7d60.rna_seq.chimeric.gdc_realn.bam 30710775 BAM chimeric harmonized CPTAC3 1365d901-b147-4c5c-bbf3-295c3b4c94ac de989aff8a489c0c0dd69741656bc4ea { 'aliquot_tag': 'ALQ_c1375959', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02375.RNA-Seq.chimeric.T.hg38 C3N-02375 LSCC RNA-Seq tumor CPT0146480007 6d6a1efe-c97c-4fbf-8e35-09414f92f2df.rna_seq.chimeric.gdc_realn.bam 19130371 BAM chimeric harmonized CPTAC3 2be52fe0-5b14-489f-9c1e-aad2bdcc8edc fcee45d6dba454b947318d77c025a155 { 'aliquot_tag': 'ALQ_dda3ec3a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02375.RNA-Seq.genomic.A.hg38 C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 fd869326-ee90-4065-81ab-d38a3c0d7d60.rna_seq.genomic.gdc_realn.bam 8518494206 BAM genomic harmonized CPTAC3 ccdf6243-0400-48ce-a464-04472eefa4d5 3c513ff07d1c994a37ab564a4ba5f10e { 'aliquot_tag': 'ALQ_c1375959', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02375.RNA-Seq.genomic.A.hg38 C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 fd869326-ee90-4065-81ab-d38a3c0d7d60.rna_seq.genomic.gdc_realn.bam 8518494206 BAM genomic harmonized CPTAC3 0ea35eaa-726f-402b-a0aa-db599fd87ff6 3c513ff07d1c994a37ab564a4ba5f10e { 'aliquot_tag': 'ALQ_c1375959', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02375.RNA-Seq.genomic.T.hg38 C3N-02375 LSCC RNA-Seq tumor CPT0146480007 6d6a1efe-c97c-4fbf-8e35-09414f92f2df.rna_seq.genomic.gdc_realn.bam 6804558921 BAM genomic harmonized CPTAC3 daca94c2-f76a-4d48-9998-d5e98287176f 1a6a19edc4d8d0d1077b882964da1110 { 'aliquot_tag': 'ALQ_dda3ec3a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02375.RNA-Seq.R1_L002.T C3N-02375 LSCC RNA-Seq tumor CPT0146480007 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3142352798 FASTQ R1_L002 unaligned CPTAC3 e21ad989-8121-4808-93c6-d07012c3d218 32f2ad1111473c5c277e356a1da2bf81 { 'aliquot_tag': 'ALQ_dda3ec3a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02375.RNA-Seq.R1_L005.A C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 180926_UNC31-K00269_0155_AHWN7WBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 3968971217 FASTQ R1_L005 unaligned CPTAC3 297e37ea-46c3-43d0-a7de-609431e4bde1 332fb581796600e8f94b39912ab32f15 { 'aliquot_tag': 'ALQ_c1375959', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02375.RNA-Seq.R2_L002.T C3N-02375 LSCC RNA-Seq tumor CPT0146480007 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L002_R2_001.fastq.gz 3389401947 FASTQ R2_L002 unaligned CPTAC3 32a83be0-97a7-4e68-a2a8-8a7b722e4697 b203327ad983433885e5612a203b81cf { 'aliquot_tag': 'ALQ_dda3ec3a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02375.RNA-Seq.R2_L005.A C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 180926_UNC31-K00269_0155_AHWN7WBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4154746369 FASTQ R2_L005 unaligned CPTAC3 51f3310d-530d-4684-8697-4e3084bb3d07 a0f4b18628ae0147cb4e014af04232ad { 'aliquot_tag': 'ALQ_c1375959', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02375.RNA-Seq.R1_L002.T C3N-02375 LSCC RNA-Seq tumor CPT0146480007 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L002_R1_001.fastq.gz 3142352798 FASTQ R1_L002 unaligned CPTAC3 e21ad989-8121-4808-93c6-d07012c3d218 32f2ad1111473c5c277e356a1da2bf81 { 'aliquot_tag': 'ALQ_dda3ec3a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02375.RNA-Seq.R1_L005.A C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 180926_UNC31-K00269_0155_AHWN7WBBXX_TAGCTT_S18_L005_R1_001.fastq.gz 3968971217 FASTQ R1_L005 unaligned CPTAC3 297e37ea-46c3-43d0-a7de-609431e4bde1 332fb581796600e8f94b39912ab32f15 { 'aliquot_tag': 'ALQ_c1375959', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02375.RNA-Seq.R2_L002.T C3N-02375 LSCC RNA-Seq tumor CPT0146480007 180926_UNC31-K00269_0155_AHWN7WBBXX_CGTACG_S5_L002_R2_001.fastq.gz 3389401947 FASTQ R2_L002 unaligned CPTAC3 32a83be0-97a7-4e68-a2a8-8a7b722e4697 b203327ad983433885e5612a203b81cf { 'aliquot_tag': 'ALQ_dda3ec3a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02375.RNA-Seq.R2_L005.A C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 180926_UNC31-K00269_0155_AHWN7WBBXX_TAGCTT_S18_L005_R2_001.fastq.gz 4154746369 FASTQ R2_L005 unaligned CPTAC3 51f3310d-530d-4684-8697-4e3084bb3d07 a0f4b18628ae0147cb4e014af04232ad { 'aliquot_tag': 'ALQ_c1375959', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-02375.RNA-Seq.transcriptome.A.hg38 C3N-02375 LSCC RNA-Seq tissue_normal CPT0146500009 fd869326-ee90-4065-81ab-d38a3c0d7d60.rna_seq.transcriptome.gdc_realn.bam 10420796459 BAM transcriptome harmonized CPTAC3 b35756b7-66a5-4a61-bc82-bf60c5e91239 5b17b23398245f0ee078aab0a9a15af8 { 'aliquot_tag': 'ALQ_c1375959', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02375.RNA-Seq.transcriptome.T.hg38 C3N-02375 LSCC RNA-Seq tumor CPT0146480007 6d6a1efe-c97c-4fbf-8e35-09414f92f2df.rna_seq.transcriptome.gdc_realn.bam 9996164720 BAM transcriptome harmonized CPTAC3 eda6489e-62e1-43c2-8045-7c3faa62d984 c18b61f13e49cdf6a374db8d856bc5b3 { 'aliquot_tag': 'ALQ_dda3ec3a', 'gdc_sample_type': 'Primary Tumor' } C3N-02375.WGS.A C3N-02375 LSCC WGS tissue_normal CPT0146500006 CPT0146500006.WholeGenome.RP-1303.bam 58873288250 BAM aligned CPTAC3 24db5348-9cbc-418f-81c1-ead012741303 6d1c6ed27a56676ec51946e424ed336a { 'aliquot_tag': 'ALQ_518844c8', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -30969,11 +33099,11 @@ C3N-02379.miRNA-Seq.T.hg38 C3N-02379 LUAD miRNA-Seq tumor CPT0146580007 d2d0e91b C3N-02379.RNA-Seq.chimeric.A.hg38 C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 96baf43b-d2d8-41d3-91c9-00acde92b6c0.rna_seq.chimeric.gdc_realn.bam 47556607 BAM chimeric harmonized CPTAC3 ba3ee5a5-9804-4d7f-8585-cb4f684054d1 e8f9b116fe51c82a72b6a2857c7b94fc { 'aliquot_tag': 'ALQ_d71c3666', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02379.RNA-Seq.chimeric.T.hg38 C3N-02379 LUAD RNA-Seq tumor CPT0146580007 d835d325-aab8-4505-a1d8-1f9aa194e267.rna_seq.chimeric.gdc_realn.bam 55902629 BAM chimeric harmonized CPTAC3 26fe3009-12b5-4ac0-b6bf-56ee829fe79a 1f9844881fd6b07276bfd69372a39fbe { 'aliquot_tag': 'ALQ_16ff3f9f', 'gdc_sample_type': 'Primary Tumor' } C3N-02379.RNA-Seq.genomic.A.hg38 C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 96baf43b-d2d8-41d3-91c9-00acde92b6c0.rna_seq.genomic.gdc_realn.bam 8438943813 BAM genomic harmonized CPTAC3 fd5efe14-7359-4f61-889c-9ac15869f9be 84282b5281bd2748de75c235429a109c { 'aliquot_tag': 'ALQ_d71c3666', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02379.RNA-Seq.genomic.T.hg38 C3N-02379 LUAD RNA-Seq tumor CPT0146580007 d835d325-aab8-4505-a1d8-1f9aa194e267.rna_seq.genomic.gdc_realn.bam 10008829484 BAM genomic harmonized CPTAC3 d731abf3-03ef-4d4f-a52e-e7e82bbbaa05 2da4389801cf217857c1d05017eb26b0 { 'aliquot_tag': 'ALQ_16ff3f9f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02379.RNA-Seq.R1_L005.A C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATTCCT_S17_L005_R1_001.fastq.gz 3975417083 FASTQ R1_L005 unaligned CPTAC3 4b819950-6a36-4118-a52a-12fe2b163bc6 6988ca1931ff4eb7e3064812ed07f35a { 'aliquot_tag': 'ALQ_d71c3666', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02379.RNA-Seq.R1_L008.T C3N-02379 LUAD RNA-Seq tumor CPT0146580007 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L008_R1_001.fastq.gz 4587162470 FASTQ R1_L008 unaligned CPTAC3 5288ad0d-7c3c-4d0d-b975-ecf62a09a09f ceb58aa4262a05ceb302f68e5ea7298e { 'aliquot_tag': 'ALQ_16ff3f9f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02379.RNA-Seq.R2_L005.A C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATTCCT_S17_L005_R2_001.fastq.gz 4193483753 FASTQ R2_L005 unaligned CPTAC3 9230762d-5acf-4492-855b-fa786e9edfe9 a5578c1afc9e6c25ae315533c4bb29ef { 'aliquot_tag': 'ALQ_d71c3666', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02379.RNA-Seq.R2_L008.T C3N-02379 LUAD RNA-Seq tumor CPT0146580007 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L008_R2_001.fastq.gz 4984677667 FASTQ R2_L008 unaligned CPTAC3 c5c7076f-a207-4abc-a1fb-3a7868d3dab7 d878c8d444a1634bc57c6b16df08af62 { 'aliquot_tag': 'ALQ_16ff3f9f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02379.RNA-Seq.genomic.T.hg38 C3N-02379 LUAD RNA-Seq tumor CPT0146580007 d835d325-aab8-4505-a1d8-1f9aa194e267.rna_seq.genomic.gdc_realn.bam 10008829484 BAM genomic harmonized CPTAC3 8631d872-5d34-403f-a5cc-77eb1f4cddc5 2da4389801cf217857c1d05017eb26b0 { 'aliquot_tag': 'ALQ_16ff3f9f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02379.RNA-Seq.R1_L005.A C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATTCCT_S17_L005_R1_001.fastq.gz 3975417083 FASTQ R1_L005 unaligned CPTAC3 4b819950-6a36-4118-a52a-12fe2b163bc6 6988ca1931ff4eb7e3064812ed07f35a { 'aliquot_tag': 'ALQ_d71c3666', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02379.RNA-Seq.R1_L008.T C3N-02379 LUAD RNA-Seq tumor CPT0146580007 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L008_R1_001.fastq.gz 4587162470 FASTQ R1_L008 unaligned CPTAC3 5288ad0d-7c3c-4d0d-b975-ecf62a09a09f ceb58aa4262a05ceb302f68e5ea7298e { 'aliquot_tag': 'ALQ_16ff3f9f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02379.RNA-Seq.R2_L005.A C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATTCCT_S17_L005_R2_001.fastq.gz 4193483753 FASTQ R2_L005 unaligned CPTAC3 9230762d-5acf-4492-855b-fa786e9edfe9 a5578c1afc9e6c25ae315533c4bb29ef { 'aliquot_tag': 'ALQ_d71c3666', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02379.RNA-Seq.R2_L008.T C3N-02379 LUAD RNA-Seq tumor CPT0146580007 180502_UNC32-K00270_0094_BHTVLMBBXX_TAGCTT_S5_L008_R2_001.fastq.gz 4984677667 FASTQ R2_L008 unaligned CPTAC3 c5c7076f-a207-4abc-a1fb-3a7868d3dab7 d878c8d444a1634bc57c6b16df08af62 { 'aliquot_tag': 'ALQ_16ff3f9f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02379.RNA-Seq.transcriptome.A.hg38 C3N-02379 LUAD RNA-Seq tissue_normal CPT0146600006 96baf43b-d2d8-41d3-91c9-00acde92b6c0.rna_seq.transcriptome.gdc_realn.bam 9358521541 BAM transcriptome harmonized CPTAC3 198b8f17-3f20-4aaa-ace2-4baed9f711d9 7fdf493f666fe08bf09486f97d04cdd8 { 'aliquot_tag': 'ALQ_d71c3666', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02379.RNA-Seq.transcriptome.T.hg38 C3N-02379 LUAD RNA-Seq tumor CPT0146580007 d835d325-aab8-4505-a1d8-1f9aa194e267.rna_seq.transcriptome.gdc_realn.bam 13123674276 BAM transcriptome harmonized CPTAC3 33a147f6-ac3c-416c-98dd-720fff245068 7b21fabd940d7558c0ee737e6e71ba6f { 'aliquot_tag': 'ALQ_16ff3f9f', 'gdc_sample_type': 'Primary Tumor' } C3N-02379.WGS.A C3N-02379 LUAD WGS tissue_normal CPT0146600009 CPT0146600009.WholeGenome.RP-1303.bam 60344229444 BAM aligned CPTAC3 5269fbeb-cf8c-44cd-a368-eb3835fc0ec9 68fc1253c72ae3777ceb4aea110c2225 { 'aliquot_tag': 'ALQ_47a32bf7', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -30998,12 +33128,12 @@ C3N-02380.miRNA-Seq.T C3N-02380 LUAD miRNA-Seq tumor CPT0146680007 181108_UNC31- C3N-02380.miRNA-Seq.T.hg38 C3N-02380 LUAD miRNA-Seq tumor CPT0146680007 cf91c2b0-399e-4113-8434-591d79734509_mirnaseq_gdc_realn.bam 245376478 BAM harmonized CPTAC3 946a7e98-33c1-4c8b-96d6-7c1e7a250fd4 78e71b03e14249dbfbbf2a41ae180756 { 'aliquot_tag': 'ALQ_906b4d31', 'gdc_sample_type': 'Primary Tumor' } C3N-02380.RNA-Seq.chimeric.A.hg38 C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 8e1afc55-fa77-493c-ba9c-05b2eb1157fd.rna_seq.chimeric.gdc_realn.bam 40430403 BAM chimeric harmonized CPTAC3 867885db-cf7f-4bc7-8202-baebe89753b5 1c2506b194db6de1297f6adcc622f419 { 'aliquot_tag': 'ALQ_1c40e5c3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02380.RNA-Seq.chimeric.T.hg38 C3N-02380 LUAD RNA-Seq tumor CPT0146680007 499ca0d4-0d89-47c1-bb74-43b8a76fda86.rna_seq.chimeric.gdc_realn.bam 111940351 BAM chimeric harmonized CPTAC3 623ebf72-fbbf-4448-a045-62376c818b9e 8c68061941119f28da43d08acef50cbd { 'aliquot_tag': 'ALQ_906b4d31', 'gdc_sample_type': 'Primary Tumor' } -C3N-02380.RNA-Seq.genomic.A.hg38 C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 8e1afc55-fa77-493c-ba9c-05b2eb1157fd.rna_seq.genomic.gdc_realn.bam 7434342914 BAM genomic harmonized CPTAC3 bf26ba8e-4acd-4253-963a-cb0428b309cf b5af2f6f50aa5d9e0f039d6b633f70bb { 'aliquot_tag': 'ALQ_1c40e5c3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02380.RNA-Seq.genomic.A.hg38 C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 8e1afc55-fa77-493c-ba9c-05b2eb1157fd.rna_seq.genomic.gdc_realn.bam 7434342914 BAM genomic harmonized CPTAC3 ec1240ee-9a7e-468b-9e6f-9095765f1b64 b5af2f6f50aa5d9e0f039d6b633f70bb { 'aliquot_tag': 'ALQ_1c40e5c3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02380.RNA-Seq.genomic.T.hg38 C3N-02380 LUAD RNA-Seq tumor CPT0146680007 499ca0d4-0d89-47c1-bb74-43b8a76fda86.rna_seq.genomic.gdc_realn.bam 9661045949 BAM genomic harmonized CPTAC3 038184d8-71a9-4808-bdef-a177f3649d25 b6fcb5e78c151d87dc916c4401dac60c { 'aliquot_tag': 'ALQ_906b4d31', 'gdc_sample_type': 'Primary Tumor' } -C3N-02380.RNA-Seq.R1_L005.A C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATCACG_S20_L005_R1_001.fastq.gz 3534442210 FASTQ R1_L005 unaligned CPTAC3 88726cfe-6ed5-45a1-b154-26910cf7dd1a d2efe5adfbd17e59af421aacf803ecce { 'aliquot_tag': 'ALQ_1c40e5c3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02380.RNA-Seq.R1_L008.T C3N-02380 LUAD RNA-Seq tumor CPT0146680007 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L008_R1_001.fastq.gz 4001677751 FASTQ R1_L008 unaligned CPTAC3 9e27348c-6ff2-4e76-9749-fb2cb7322136 15e91ae7fb43b331fe85d4e949ebb0dd { 'aliquot_tag': 'ALQ_906b4d31', 'gdc_sample_type': 'Primary Tumor' } -C3N-02380.RNA-Seq.R2_L005.A C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATCACG_S20_L005_R2_001.fastq.gz 3565209807 FASTQ R2_L005 unaligned CPTAC3 c56bba94-989f-42f1-837b-27fbc10864cb b36fabc09e01845cd8758398be05c15a { 'aliquot_tag': 'ALQ_1c40e5c3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02380.RNA-Seq.R2_L008.T C3N-02380 LUAD RNA-Seq tumor CPT0146680007 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L008_R2_001.fastq.gz 4538250920 FASTQ R2_L008 unaligned CPTAC3 31a19dfa-bc63-4f29-9768-1881ff09d7be 72004073d69a4a3319dff2b68deaa142 { 'aliquot_tag': 'ALQ_906b4d31', 'gdc_sample_type': 'Primary Tumor' } +C3N-02380.RNA-Seq.R1_L005.A C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATCACG_S20_L005_R1_001.fastq.gz 3534442210 FASTQ R1_L005 unaligned CPTAC3 88726cfe-6ed5-45a1-b154-26910cf7dd1a d2efe5adfbd17e59af421aacf803ecce { 'aliquot_tag': 'ALQ_1c40e5c3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02380.RNA-Seq.R1_L008.T C3N-02380 LUAD RNA-Seq tumor CPT0146680007 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L008_R1_001.fastq.gz 4001677751 FASTQ R1_L008 unaligned CPTAC3 9e27348c-6ff2-4e76-9749-fb2cb7322136 15e91ae7fb43b331fe85d4e949ebb0dd { 'aliquot_tag': 'ALQ_906b4d31', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02380.RNA-Seq.R2_L005.A C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 180502_UNC32-K00270_0094_BHTVLMBBXX_ATCACG_S20_L005_R2_001.fastq.gz 3565209807 FASTQ R2_L005 unaligned CPTAC3 c56bba94-989f-42f1-837b-27fbc10864cb b36fabc09e01845cd8758398be05c15a { 'aliquot_tag': 'ALQ_1c40e5c3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02380.RNA-Seq.R2_L008.T C3N-02380 LUAD RNA-Seq tumor CPT0146680007 180502_UNC32-K00270_0094_BHTVLMBBXX_GGCTAC_S6_L008_R2_001.fastq.gz 4538250920 FASTQ R2_L008 unaligned CPTAC3 31a19dfa-bc63-4f29-9768-1881ff09d7be 72004073d69a4a3319dff2b68deaa142 { 'aliquot_tag': 'ALQ_906b4d31', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02380.RNA-Seq.transcriptome.A.hg38 C3N-02380 LUAD RNA-Seq tissue_normal CPT0146700006 8e1afc55-fa77-493c-ba9c-05b2eb1157fd.rna_seq.transcriptome.gdc_realn.bam 8503647780 BAM transcriptome harmonized CPTAC3 d496ed16-fae6-4806-8bab-c39dca323d15 37cad7d4f2a96bf085ff53183af7b1d9 { 'aliquot_tag': 'ALQ_1c40e5c3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02380.RNA-Seq.transcriptome.T.hg38 C3N-02380 LUAD RNA-Seq tumor CPT0146680007 499ca0d4-0d89-47c1-bb74-43b8a76fda86.rna_seq.transcriptome.gdc_realn.bam 9609218443 BAM transcriptome harmonized CPTAC3 448fc971-cd71-4acf-8c63-94b21f5ed11b 5988b6cff045f97c058549f83c101347 { 'aliquot_tag': 'ALQ_906b4d31', 'gdc_sample_type': 'Primary Tumor' } C3N-02380.WGS.A C3N-02380 LUAD WGS tissue_normal CPT0146700009 CPT0146700009.WholeGenome.RP-1303.bam 56730058746 BAM aligned CPTAC3 06cda296-b181-439d-a8f9-043a1a64db0f d0089be448eda58b3e53fd53317791ff { 'aliquot_tag': 'ALQ_8cfff852', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31029,11 +33159,11 @@ C3N-02421.miRNA-Seq.T.hg38 C3N-02421 LUAD miRNA-Seq tumor CPT0146780007 def3054e C3N-02421.RNA-Seq.chimeric.A.hg38 C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 ad461376-a83a-41e2-8185-39e918cb7ee5.rna_seq.chimeric.gdc_realn.bam 161351414 BAM chimeric harmonized CPTAC3 940ba12f-43e6-4ba8-983a-fe9cccb8b7f2 497346069c1900f1a81409f9dc72cf93 { 'aliquot_tag': 'ALQ_ed165716', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02421.RNA-Seq.chimeric.T.hg38 C3N-02421 LUAD RNA-Seq tumor CPT0146780007 ebb0ffef-1ada-40cb-a56c-d91c6ff9e0eb.rna_seq.chimeric.gdc_realn.bam 56379147 BAM chimeric harmonized CPTAC3 b373facd-9ca0-4692-a95a-aedf58609e51 d5ec5ee02935f5b86be4a2804605b0d4 { 'aliquot_tag': 'ALQ_5b379e94', 'gdc_sample_type': 'Primary Tumor' } C3N-02421.RNA-Seq.genomic.A.hg38 C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 ad461376-a83a-41e2-8185-39e918cb7ee5.rna_seq.genomic.gdc_realn.bam 10822918633 BAM genomic harmonized CPTAC3 b61066ce-d956-4ce4-a753-a16ca2ec7326 d8e27c0d25a025fa5cf3afb7259e0676 { 'aliquot_tag': 'ALQ_ed165716', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02421.RNA-Seq.genomic.T.hg38 C3N-02421 LUAD RNA-Seq tumor CPT0146780007 ebb0ffef-1ada-40cb-a56c-d91c6ff9e0eb.rna_seq.genomic.gdc_realn.bam 8271537887 BAM genomic harmonized CPTAC3 544ff6aa-2161-4637-8283-2541eee68542 529c0c665d52e8ef7900cd7b5eb856ce { 'aliquot_tag': 'ALQ_5b379e94', 'gdc_sample_type': 'Primary Tumor' } -C3N-02421.RNA-Seq.R1_L004.A C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 180502_UNC32-K00270_0094_BHTVLMBBXX_CGATGT_S15_L004_R1_001.fastq.gz 5090698736 FASTQ R1_L004 unaligned CPTAC3 cca0b611-f53e-41c5-b1f2-5e0c562592d9 7a179cc4a07c21c8e4ee0ba6455f407d { 'aliquot_tag': 'ALQ_ed165716', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02421.RNA-Seq.R1_L008.T C3N-02421 LUAD RNA-Seq tumor CPT0146780007 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L008_R1_001.fastq.gz 3884046169 FASTQ R1_L008 unaligned CPTAC3 454aea97-0497-450c-b5bc-194cd9c4bcf2 3eaa0c69181d6817974eb3a454aa4783 { 'aliquot_tag': 'ALQ_5b379e94', 'gdc_sample_type': 'Primary Tumor' } -C3N-02421.RNA-Seq.R2_L004.A C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 180502_UNC32-K00270_0094_BHTVLMBBXX_CGATGT_S15_L004_R2_001.fastq.gz 5600672055 FASTQ R2_L004 unaligned CPTAC3 dd03f2a9-0abb-40c1-bb0e-e883675522bc fadf4e2a77608c630342b14cde3dba76 { 'aliquot_tag': 'ALQ_ed165716', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02421.RNA-Seq.R2_L008.T C3N-02421 LUAD RNA-Seq tumor CPT0146780007 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L008_R2_001.fastq.gz 4194831572 FASTQ R2_L008 unaligned CPTAC3 3ec298f3-2bc0-470f-b207-8ea04963659b 5c63d90a36cb87aca622dd4ebd3cfee5 { 'aliquot_tag': 'ALQ_5b379e94', 'gdc_sample_type': 'Primary Tumor' } +C3N-02421.RNA-Seq.genomic.T.hg38 C3N-02421 LUAD RNA-Seq tumor CPT0146780007 ebb0ffef-1ada-40cb-a56c-d91c6ff9e0eb.rna_seq.genomic.gdc_realn.bam 8271537887 BAM genomic harmonized CPTAC3 7a83c36f-0189-4a75-9fa8-9b512432ce5e 529c0c665d52e8ef7900cd7b5eb856ce { 'aliquot_tag': 'ALQ_5b379e94', 'gdc_sample_type': 'Primary Tumor' } +C3N-02421.RNA-Seq.R1_L004.A C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 180502_UNC32-K00270_0094_BHTVLMBBXX_CGATGT_S15_L004_R1_001.fastq.gz 5090698736 FASTQ R1_L004 unaligned CPTAC3 cca0b611-f53e-41c5-b1f2-5e0c562592d9 7a179cc4a07c21c8e4ee0ba6455f407d { 'aliquot_tag': 'ALQ_ed165716', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02421.RNA-Seq.R1_L008.T C3N-02421 LUAD RNA-Seq tumor CPT0146780007 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L008_R1_001.fastq.gz 3884046169 FASTQ R1_L008 unaligned CPTAC3 454aea97-0497-450c-b5bc-194cd9c4bcf2 3eaa0c69181d6817974eb3a454aa4783 { 'aliquot_tag': 'ALQ_5b379e94', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02421.RNA-Seq.R2_L004.A C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 180502_UNC32-K00270_0094_BHTVLMBBXX_CGATGT_S15_L004_R2_001.fastq.gz 5600672055 FASTQ R2_L004 unaligned CPTAC3 dd03f2a9-0abb-40c1-bb0e-e883675522bc fadf4e2a77608c630342b14cde3dba76 { 'aliquot_tag': 'ALQ_ed165716', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02421.RNA-Seq.R2_L008.T C3N-02421 LUAD RNA-Seq tumor CPT0146780007 180502_UNC32-K00270_0094_BHTVLMBBXX_CTTGTA_S8_L008_R2_001.fastq.gz 4194831572 FASTQ R2_L008 unaligned CPTAC3 3ec298f3-2bc0-470f-b207-8ea04963659b 5c63d90a36cb87aca622dd4ebd3cfee5 { 'aliquot_tag': 'ALQ_5b379e94', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02421.RNA-Seq.transcriptome.A.hg38 C3N-02421 LUAD RNA-Seq tissue_normal CPT0146800006 ad461376-a83a-41e2-8185-39e918cb7ee5.rna_seq.transcriptome.gdc_realn.bam 12707960432 BAM transcriptome harmonized CPTAC3 3e41f52e-2d52-459d-9a9b-2f83da9e2ea8 b56532322c9f3689b1b8df225cdd38a1 { 'aliquot_tag': 'ALQ_ed165716', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02421.RNA-Seq.transcriptome.T.hg38 C3N-02421 LUAD RNA-Seq tumor CPT0146780007 ebb0ffef-1ada-40cb-a56c-d91c6ff9e0eb.rna_seq.transcriptome.gdc_realn.bam 9688638603 BAM transcriptome harmonized CPTAC3 320c0459-4afd-4309-9dea-6476c8133e46 ffbea8c9f1c2957bdfed839ba7a6d22a { 'aliquot_tag': 'ALQ_5b379e94', 'gdc_sample_type': 'Primary Tumor' } C3N-02421.WGS.A C3N-02421 LUAD WGS tissue_normal CPT0146800009 CPT0146800009.WholeGenome.RP-1303.bam 64151727026 BAM aligned CPTAC3 1282e4d4-610a-45ab-98e5-b8a71940d02e ab8b12680ed6730a58158b929ad2711b { 'aliquot_tag': 'ALQ_7da94a87', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31053,9 +33183,9 @@ C3N-02422.MethArray.Red.T C3N-02422 LUAD Methylation Array tumor CPT0146880010 2 C3N-02422.miRNA-Seq.T C3N-02422 LUAD miRNA-Seq tumor CPT0146880007 181108_UNC31-K00269_0162_AH255GBBXY_CGGAAT_S13_L003_R1_001.unaln.bam 287838469 BAM unaligned CPTAC3 88a4ef9e-2857-4fa4-b1ca-430b4288791d 9970a1804bae88cba53ac06f3b594d34 { 'aliquot_tag': 'ALQ_aa612c41', 'gdc_sample_type': 'Primary Tumor' } C3N-02422.miRNA-Seq.T.hg38 C3N-02422 LUAD miRNA-Seq tumor CPT0146880007 cdbee926-9a4d-4c0d-8a01-89005a32b6be_mirnaseq_gdc_realn.bam 315524344 BAM harmonized CPTAC3 73125572-e567-46bb-9fd8-47a30375eb96 f108aa6f09584d545ecdb1fc6cd0e961 { 'aliquot_tag': 'ALQ_aa612c41', 'gdc_sample_type': 'Primary Tumor' } C3N-02422.RNA-Seq.chimeric.T.hg38 C3N-02422 LUAD RNA-Seq tumor CPT0146880007 54f100dd-63ef-4f23-b7f1-e492ead3b902.rna_seq.chimeric.gdc_realn.bam 42440802 BAM chimeric harmonized CPTAC3 ce282f7d-9298-48da-b378-a79d1ff3474b a76d8ebb7d5b9ad66356142d515b351f { 'aliquot_tag': 'ALQ_aa612c41', 'gdc_sample_type': 'Primary Tumor' } -C3N-02422.RNA-Seq.genomic.T.hg38 C3N-02422 LUAD RNA-Seq tumor CPT0146880007 54f100dd-63ef-4f23-b7f1-e492ead3b902.rna_seq.genomic.gdc_realn.bam 7358416711 BAM genomic harmonized CPTAC3 060b54ae-a5a5-49f7-bb39-7fc0255092e4 bfe53be42fe6ef774c1356e159268f56 { 'aliquot_tag': 'ALQ_aa612c41', 'gdc_sample_type': 'Primary Tumor' } -C3N-02422.RNA-Seq.R1_L008.T C3N-02422 LUAD RNA-Seq tumor CPT0146880007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L008_R1_001.fastq.gz 3308540565 FASTQ R1_L008 unaligned CPTAC3 147fb7cf-44ef-4499-96d7-54f30d6d6562 4f96558cfe2927590d8a425faa41037e { 'aliquot_tag': 'ALQ_aa612c41', 'gdc_sample_type': 'Primary Tumor' } -C3N-02422.RNA-Seq.R2_L008.T C3N-02422 LUAD RNA-Seq tumor CPT0146880007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L008_R2_001.fastq.gz 3640360440 FASTQ R2_L008 unaligned CPTAC3 8cd424a4-9961-483b-9147-514293b54155 1c06c65dc5d873c89560179d05eb97e7 { 'aliquot_tag': 'ALQ_aa612c41', 'gdc_sample_type': 'Primary Tumor' } +C3N-02422.RNA-Seq.genomic.T.hg38 C3N-02422 LUAD RNA-Seq tumor CPT0146880007 54f100dd-63ef-4f23-b7f1-e492ead3b902.rna_seq.genomic.gdc_realn.bam 7358416711 BAM genomic harmonized CPTAC3 a6b42b3a-0ccc-480c-9c6f-b8ccd4722bdd bfe53be42fe6ef774c1356e159268f56 { 'aliquot_tag': 'ALQ_aa612c41', 'gdc_sample_type': 'Primary Tumor' } +C3N-02422.RNA-Seq.R1_L008.T C3N-02422 LUAD RNA-Seq tumor CPT0146880007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L008_R1_001.fastq.gz 3308540565 FASTQ R1_L008 unaligned CPTAC3 147fb7cf-44ef-4499-96d7-54f30d6d6562 4f96558cfe2927590d8a425faa41037e { 'aliquot_tag': 'ALQ_aa612c41', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02422.RNA-Seq.R2_L008.T C3N-02422 LUAD RNA-Seq tumor CPT0146880007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTCAA_S7_L008_R2_001.fastq.gz 3640360440 FASTQ R2_L008 unaligned CPTAC3 8cd424a4-9961-483b-9147-514293b54155 1c06c65dc5d873c89560179d05eb97e7 { 'aliquot_tag': 'ALQ_aa612c41', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02422.RNA-Seq.transcriptome.T.hg38 C3N-02422 LUAD RNA-Seq tumor CPT0146880007 54f100dd-63ef-4f23-b7f1-e492ead3b902.rna_seq.transcriptome.gdc_realn.bam 8488543674 BAM transcriptome harmonized CPTAC3 d63c5e1e-80d9-46b8-81df-3320f5b6c058 5e4a533ac3d87d72bb4d9b3310bbd079 { 'aliquot_tag': 'ALQ_aa612c41', 'gdc_sample_type': 'Primary Tumor' } C3N-02422.WGS.N C3N-02422 LUAD WGS blood_normal CPT0146910002 CPT0146910002.WholeGenome.RP-1303.bam 58280953535 BAM aligned CPTAC3 05c86947-3dd1-4456-b6e5-3fd973d00d3e a63d235d670e2ccc718c36058674168c { 'aliquot_tag': 'ALQ_1c47691a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02422.WGS.N.hg38 C3N-02422 LUAD WGS blood_normal CPT0146910002 992af5b1-11e4-4fa6-9893-e1f5b46f1855_wgs_gdc_realn.bam 85418823367 BAM harmonized CPTAC3 553a682a-ab16-40b5-a63c-663fd2b8a652 788214eb18013c19208165a4b36ed360 { 'aliquot_tag': 'ALQ_1c47691a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -31075,12 +33205,12 @@ C3N-02423.miRNA-Seq.T C3N-02423 LUAD miRNA-Seq tumor CPT0146980007 181108_UNC31- C3N-02423.miRNA-Seq.T.hg38 C3N-02423 LUAD miRNA-Seq tumor CPT0146980007 5c98ae24-4d99-46d4-8d65-b792a68e34a5_mirnaseq_gdc_realn.bam 269087814 BAM harmonized CPTAC3 f5c44cac-cae8-4745-82a6-7426b5ba469a 9f8d8690e58501e0dabf521d8d343ab3 { 'aliquot_tag': 'ALQ_613dffe4', 'gdc_sample_type': 'Primary Tumor' } C3N-02423.RNA-Seq.chimeric.A.hg38 C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 266c2f15-99fe-4abf-b7bf-089cca9e6baa.rna_seq.chimeric.gdc_realn.bam 136152932 BAM chimeric harmonized CPTAC3 33de3779-597b-4607-ac86-262a932938cd 01611bcae5f5dc97205c416fb5f93487 { 'aliquot_tag': 'ALQ_a732decf', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02423.RNA-Seq.chimeric.T.hg38 C3N-02423 LUAD RNA-Seq tumor CPT0146980007 0e0691d9-27b9-45b3-a857-40eeb3134e9b.rna_seq.chimeric.gdc_realn.bam 64247233 BAM chimeric harmonized CPTAC3 1d774325-34fa-4623-89cf-1a8db2e78f78 3615d2c4c9fcbff47f380db72e9b80d3 { 'aliquot_tag': 'ALQ_613dffe4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02423.RNA-Seq.genomic.A.hg38 C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 266c2f15-99fe-4abf-b7bf-089cca9e6baa.rna_seq.genomic.gdc_realn.bam 8686773264 BAM genomic harmonized CPTAC3 b13c8d9c-3c9e-4dc8-a619-35f1387af13d d2d3426a3509393c44c3e48ea10d9f16 { 'aliquot_tag': 'ALQ_a732decf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02423.RNA-Seq.genomic.T.hg38 C3N-02423 LUAD RNA-Seq tumor CPT0146980007 0e0691d9-27b9-45b3-a857-40eeb3134e9b.rna_seq.genomic.gdc_realn.bam 8666348471 BAM genomic harmonized CPTAC3 3fdf81dd-c3dc-4241-b226-e7be307cfa94 a1acf9512e3347cfd98aff0fb15522ab { 'aliquot_tag': 'ALQ_613dffe4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02423.RNA-Seq.R1_L004.A C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 180502_UNC32-K00270_0094_BHTVLMBBXX_TTAGGC_S14_L004_R1_001.fastq.gz 3989790171 FASTQ R1_L004 unaligned CPTAC3 a4c506c9-e1a9-4c69-99bf-3f9c1c8bb042 a05eec00b00ca57bdbc3c12ae02e7df2 { 'aliquot_tag': 'ALQ_a732decf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02423.RNA-Seq.R1_L007.T C3N-02423 LUAD RNA-Seq tumor CPT0146980007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L007_R1_001.fastq.gz 4010210061 FASTQ R1_L007 unaligned CPTAC3 4fd065e7-2b2a-48ec-a342-c2dd97a38e9f a22449027e8f90d08fc2ff4454236703 { 'aliquot_tag': 'ALQ_613dffe4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02423.RNA-Seq.R2_L004.A C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 180502_UNC32-K00270_0094_BHTVLMBBXX_TTAGGC_S14_L004_R2_001.fastq.gz 4422225843 FASTQ R2_L004 unaligned CPTAC3 694fe6fe-7c01-4060-8626-b01c73ed3a7a 19cf188165100f07bbb6769b5a1430e8 { 'aliquot_tag': 'ALQ_a732decf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02423.RNA-Seq.R2_L007.T C3N-02423 LUAD RNA-Seq tumor CPT0146980007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L007_R2_001.fastq.gz 4258304420 FASTQ R2_L007 unaligned CPTAC3 70f8ae40-6313-4b6b-9a03-c709f96d1ee2 ceffa5459ffee7022547337309fb1037 { 'aliquot_tag': 'ALQ_613dffe4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02423.RNA-Seq.genomic.A.hg38 C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 266c2f15-99fe-4abf-b7bf-089cca9e6baa.rna_seq.genomic.gdc_realn.bam 8686773264 BAM genomic harmonized CPTAC3 f1b25e7d-dc8b-4fb6-a168-3124d31bd35c d2d3426a3509393c44c3e48ea10d9f16 { 'aliquot_tag': 'ALQ_a732decf', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02423.RNA-Seq.genomic.T.hg38 C3N-02423 LUAD RNA-Seq tumor CPT0146980007 0e0691d9-27b9-45b3-a857-40eeb3134e9b.rna_seq.genomic.gdc_realn.bam 8666348471 BAM genomic harmonized CPTAC3 84de0d9a-8b4b-40a5-850e-037e6ebf5082 a1acf9512e3347cfd98aff0fb15522ab { 'aliquot_tag': 'ALQ_613dffe4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02423.RNA-Seq.R1_L004.A C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 180502_UNC32-K00270_0094_BHTVLMBBXX_TTAGGC_S14_L004_R1_001.fastq.gz 3989790171 FASTQ R1_L004 unaligned CPTAC3 a4c506c9-e1a9-4c69-99bf-3f9c1c8bb042 a05eec00b00ca57bdbc3c12ae02e7df2 { 'aliquot_tag': 'ALQ_a732decf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02423.RNA-Seq.R1_L007.T C3N-02423 LUAD RNA-Seq tumor CPT0146980007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L007_R1_001.fastq.gz 4010210061 FASTQ R1_L007 unaligned CPTAC3 4fd065e7-2b2a-48ec-a342-c2dd97a38e9f a22449027e8f90d08fc2ff4454236703 { 'aliquot_tag': 'ALQ_613dffe4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02423.RNA-Seq.R2_L004.A C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 180502_UNC32-K00270_0094_BHTVLMBBXX_TTAGGC_S14_L004_R2_001.fastq.gz 4422225843 FASTQ R2_L004 unaligned CPTAC3 694fe6fe-7c01-4060-8626-b01c73ed3a7a 19cf188165100f07bbb6769b5a1430e8 { 'aliquot_tag': 'ALQ_a732decf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02423.RNA-Seq.R2_L007.T C3N-02423 LUAD RNA-Seq tumor CPT0146980007 180502_UNC32-K00270_0094_BHTVLMBBXX_AGTTCC_S3_L007_R2_001.fastq.gz 4258304420 FASTQ R2_L007 unaligned CPTAC3 70f8ae40-6313-4b6b-9a03-c709f96d1ee2 ceffa5459ffee7022547337309fb1037 { 'aliquot_tag': 'ALQ_613dffe4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02423.RNA-Seq.transcriptome.A.hg38 C3N-02423 LUAD RNA-Seq tissue_normal CPT0147000006 266c2f15-99fe-4abf-b7bf-089cca9e6baa.rna_seq.transcriptome.gdc_realn.bam 9245671347 BAM transcriptome harmonized CPTAC3 7dc88d9c-e8d8-452d-9932-180e77589b1a 41dda30dc09680008ef9ff8d9cd5bcc0 { 'aliquot_tag': 'ALQ_a732decf', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02423.RNA-Seq.transcriptome.T.hg38 C3N-02423 LUAD RNA-Seq tumor CPT0146980007 0e0691d9-27b9-45b3-a857-40eeb3134e9b.rna_seq.transcriptome.gdc_realn.bam 10101956587 BAM transcriptome harmonized CPTAC3 7b14152b-3924-4ff1-acb1-71f98ac899d2 52c10e007982c4273d9a6454567727f4 { 'aliquot_tag': 'ALQ_613dffe4', 'gdc_sample_type': 'Primary Tumor' } C3N-02423.WGS.A C3N-02423 LUAD WGS tissue_normal CPT0147000009 CPT0147000009.WholeGenome.RP-1303.bam 72711987230 BAM aligned CPTAC3 966c074c-90dc-4ec0-ad90-ebcb9e6fb174 8f9d173fbc3464b76975e43d4bee49c9 { 'aliquot_tag': 'ALQ_378dc35e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31107,10 +33237,10 @@ C3N-02424.RNA-Seq.chimeric.A.hg38 C3N-02424 LUAD RNA-Seq tissue_normal CPT014710 C3N-02424.RNA-Seq.chimeric.T.hg38 C3N-02424 LUAD RNA-Seq tumor CPT0147080007 11f78118-17ce-4047-a4a9-cec6e8afbe89.rna_seq.chimeric.gdc_realn.bam 36911713 BAM chimeric harmonized CPTAC3 257e3c39-ae52-436d-8e82-d59a36c163d0 ca5d1a1bc2c65b9d48d5f8ca012d3cf2 { 'aliquot_tag': 'ALQ_e045a598', 'gdc_sample_type': 'Primary Tumor' } C3N-02424.RNA-Seq.genomic.A.hg38 C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 5e14a79e-1efe-49e8-ac47-fd2ead7606c6.rna_seq.genomic.gdc_realn.bam 8254351882 BAM genomic harmonized CPTAC3 102be50a-c187-42c2-b508-91997e667006 1e891ce070c84deffa0fa5f9016d81fd { 'aliquot_tag': 'ALQ_6c6e0d6a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02424.RNA-Seq.genomic.T.hg38 C3N-02424 LUAD RNA-Seq tumor CPT0147080007 11f78118-17ce-4047-a4a9-cec6e8afbe89.rna_seq.genomic.gdc_realn.bam 8264822746 BAM genomic harmonized CPTAC3 8bf22877-329d-4247-a5f8-0792bd175323 6fd0cb1bb72682f68f3217db0b909833 { 'aliquot_tag': 'ALQ_e045a598', 'gdc_sample_type': 'Primary Tumor' } -C3N-02424.RNA-Seq.R1_L004.A C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 180502_UNC32-K00270_0094_BHTVLMBBXX_TGACCA_S13_L004_R1_001.fastq.gz 3700325671 FASTQ R1_L004 unaligned CPTAC3 fe53df08-c9b4-4018-b557-cfb79f8bb720 337f9cd962dba1e171eef9b001528f80 { 'aliquot_tag': 'ALQ_6c6e0d6a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02424.RNA-Seq.R1_L007.T C3N-02424 LUAD RNA-Seq tumor CPT0147080007 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L007_R1_001.fastq.gz 3391799240 FASTQ R1_L007 unaligned CPTAC3 b493e4f4-c695-4b57-949d-688a46a0cd38 aaa32199c7d8bd144c5d56d741517d62 { 'aliquot_tag': 'ALQ_e045a598', 'gdc_sample_type': 'Primary Tumor' } -C3N-02424.RNA-Seq.R2_L004.A C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 180502_UNC32-K00270_0094_BHTVLMBBXX_TGACCA_S13_L004_R2_001.fastq.gz 3993535232 FASTQ R2_L004 unaligned CPTAC3 11a9f07b-2e64-4980-ac70-b1f231e5bfe4 f0f8bfc84fd295a86cbec44073dfd598 { 'aliquot_tag': 'ALQ_6c6e0d6a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02424.RNA-Seq.R2_L007.T C3N-02424 LUAD RNA-Seq tumor CPT0147080007 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L007_R2_001.fastq.gz 3638484505 FASTQ R2_L007 unaligned CPTAC3 7e6247d9-22e0-4d96-85e3-75a9931c5036 7c7da2649c940c6af7583f6e4e20b1c9 { 'aliquot_tag': 'ALQ_e045a598', 'gdc_sample_type': 'Primary Tumor' } +C3N-02424.RNA-Seq.R1_L004.A C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 180502_UNC32-K00270_0094_BHTVLMBBXX_TGACCA_S13_L004_R1_001.fastq.gz 3700325671 FASTQ R1_L004 unaligned CPTAC3 fe53df08-c9b4-4018-b557-cfb79f8bb720 337f9cd962dba1e171eef9b001528f80 { 'aliquot_tag': 'ALQ_6c6e0d6a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02424.RNA-Seq.R1_L007.T C3N-02424 LUAD RNA-Seq tumor CPT0147080007 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L007_R1_001.fastq.gz 3391799240 FASTQ R1_L007 unaligned CPTAC3 b493e4f4-c695-4b57-949d-688a46a0cd38 aaa32199c7d8bd144c5d56d741517d62 { 'aliquot_tag': 'ALQ_e045a598', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02424.RNA-Seq.R2_L004.A C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 180502_UNC32-K00270_0094_BHTVLMBBXX_TGACCA_S13_L004_R2_001.fastq.gz 3993535232 FASTQ R2_L004 unaligned CPTAC3 11a9f07b-2e64-4980-ac70-b1f231e5bfe4 f0f8bfc84fd295a86cbec44073dfd598 { 'aliquot_tag': 'ALQ_6c6e0d6a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02424.RNA-Seq.R2_L007.T C3N-02424 LUAD RNA-Seq tumor CPT0147080007 180502_UNC32-K00270_0094_BHTVLMBBXX_ATGTCA_S2_L007_R2_001.fastq.gz 3638484505 FASTQ R2_L007 unaligned CPTAC3 7e6247d9-22e0-4d96-85e3-75a9931c5036 7c7da2649c940c6af7583f6e4e20b1c9 { 'aliquot_tag': 'ALQ_e045a598', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02424.RNA-Seq.transcriptome.A.hg38 C3N-02424 LUAD RNA-Seq tissue_normal CPT0147100006 5e14a79e-1efe-49e8-ac47-fd2ead7606c6.rna_seq.transcriptome.gdc_realn.bam 9260803495 BAM transcriptome harmonized CPTAC3 8d42f9bb-231d-4091-ac43-779d2e56168c ceeb5500faab975a1d0521c2274c97f9 { 'aliquot_tag': 'ALQ_6c6e0d6a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02424.RNA-Seq.transcriptome.T.hg38 C3N-02424 LUAD RNA-Seq tumor CPT0147080007 11f78118-17ce-4047-a4a9-cec6e8afbe89.rna_seq.transcriptome.gdc_realn.bam 9327213882 BAM transcriptome harmonized CPTAC3 e53e1432-f3d3-47d4-bc97-ca27c3d72e36 5631ce1fade6f59c0186905eab4843a8 { 'aliquot_tag': 'ALQ_e045a598', 'gdc_sample_type': 'Primary Tumor' } C3N-02424.WGS.A C3N-02424 LUAD WGS tissue_normal CPT0147100009 CPT0147100009.WholeGenome.RP-1303.bam 59401001682 BAM aligned CPTAC3 1f4559b3-6d3c-4424-a866-5612f43d53c0 c6340a6c5824de66705187c096331055 { 'aliquot_tag': 'ALQ_fcd110fb', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31135,12 +33265,12 @@ C3N-02425.miRNA-Seq.T C3N-02425 LSCC miRNA-Seq tumor CPT0183250010 181219_UNC31- C3N-02425.miRNA-Seq.T.hg38 C3N-02425 LSCC miRNA-Seq tumor CPT0183250010 519dca7c-1569-4434-8973-895a243ea645_mirnaseq_gdc_realn.bam 243984815 BAM harmonized CPTAC3 9a868cf9-cdb3-48d3-8a55-37af73dc563f 1984799f5f7177795be98a6681367dfc { 'aliquot_tag': 'ALQ_7182559c', 'gdc_sample_type': 'Primary Tumor' } C3N-02425.RNA-Seq.chimeric.A.hg38 C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 be9ccd0d-9c48-435d-8389-330cbd9dcedc.rna_seq.chimeric.gdc_realn.bam 123996928 BAM chimeric harmonized CPTAC3 d2b9a86c-ff09-4d63-aed2-02b44d04b5e8 803da8226c968e29103f8eec942952d1 { 'aliquot_tag': 'ALQ_6b858f19', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02425.RNA-Seq.chimeric.T.hg38 C3N-02425 LSCC RNA-Seq tumor CPT0183250010 65a931e7-d01c-4f9a-992d-6b34ab08c46d.rna_seq.chimeric.gdc_realn.bam 133213494 BAM chimeric harmonized CPTAC3 8dbfe855-69b9-49d9-91b4-a3ee6d99cbc2 1dab12c98551ff9e9527318076982a0c { 'aliquot_tag': 'ALQ_7182559c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02425.RNA-Seq.genomic.A.hg38 C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 be9ccd0d-9c48-435d-8389-330cbd9dcedc.rna_seq.genomic.gdc_realn.bam 9471228877 BAM genomic harmonized CPTAC3 4c06738d-a2cf-4b37-96ed-4230f103702b 6e2312b19f34276ea6196dd7a9967282 { 'aliquot_tag': 'ALQ_6b858f19', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02425.RNA-Seq.genomic.T.hg38 C3N-02425 LSCC RNA-Seq tumor CPT0183250010 65a931e7-d01c-4f9a-992d-6b34ab08c46d.rna_seq.genomic.gdc_realn.bam 7497868509 BAM genomic harmonized CPTAC3 bddbe8cb-d558-4d2a-89d6-1f7eaef74187 09e1db895ced2a129af0ee148cb7644e { 'aliquot_tag': 'ALQ_7182559c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02425.RNA-Seq.R1_L005.A C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 181002_UNC31-K00269_0156_AHWN3HBBXX_CCGTCC_S26_L005_R1_001.fastq.gz 4653520943 FASTQ R1_L005 unaligned CPTAC3 ffa8ad9b-ddb5-4837-a842-7216d5614f91 62a02c63ad9db32c7e126f2064fd92be { 'aliquot_tag': 'ALQ_6b858f19', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02425.RNA-Seq.R1_L005.T C3N-02425 LSCC RNA-Seq tumor CPT0183250010 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTCAA_S25_L005_R1_001.fastq.gz 3469878631 FASTQ R1_L005 unaligned CPTAC3 b6a712b2-6c76-4697-bf02-b1f57d227d94 7e065a79003e33206b2cb45a3328e3ac { 'aliquot_tag': 'ALQ_7182559c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02425.RNA-Seq.R2_L005.A C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 181002_UNC31-K00269_0156_AHWN3HBBXX_CCGTCC_S26_L005_R2_001.fastq.gz 4800071059 FASTQ R2_L005 unaligned CPTAC3 081b2745-ad92-4431-b857-0a88900f49eb 26544825dc82ca24c0a107ef891284cc { 'aliquot_tag': 'ALQ_6b858f19', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02425.RNA-Seq.R2_L005.T C3N-02425 LSCC RNA-Seq tumor CPT0183250010 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTCAA_S25_L005_R2_001.fastq.gz 3619589061 FASTQ R2_L005 unaligned CPTAC3 e7f746b3-1b4d-41e9-b059-a2a72b507717 0dce386f2121042626d20fb60f9288db { 'aliquot_tag': 'ALQ_7182559c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02425.RNA-Seq.genomic.A.hg38 C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 be9ccd0d-9c48-435d-8389-330cbd9dcedc.rna_seq.genomic.gdc_realn.bam 9471228877 BAM genomic harmonized CPTAC3 2a680dc9-e57d-43dd-906a-374c9f6d877c 6e2312b19f34276ea6196dd7a9967282 { 'aliquot_tag': 'ALQ_6b858f19', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02425.RNA-Seq.genomic.T.hg38 C3N-02425 LSCC RNA-Seq tumor CPT0183250010 65a931e7-d01c-4f9a-992d-6b34ab08c46d.rna_seq.genomic.gdc_realn.bam 7497868509 BAM genomic harmonized CPTAC3 ec91f9a5-8ae2-4925-97c4-55f73d407ba3 09e1db895ced2a129af0ee148cb7644e { 'aliquot_tag': 'ALQ_7182559c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02425.RNA-Seq.R1_L005.A C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 181002_UNC31-K00269_0156_AHWN3HBBXX_CCGTCC_S26_L005_R1_001.fastq.gz 4653520943 FASTQ R1_L005 unaligned CPTAC3 ffa8ad9b-ddb5-4837-a842-7216d5614f91 62a02c63ad9db32c7e126f2064fd92be { 'aliquot_tag': 'ALQ_6b858f19', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02425.RNA-Seq.R1_L005.T C3N-02425 LSCC RNA-Seq tumor CPT0183250010 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTCAA_S25_L005_R1_001.fastq.gz 3469878631 FASTQ R1_L005 unaligned CPTAC3 b6a712b2-6c76-4697-bf02-b1f57d227d94 7e065a79003e33206b2cb45a3328e3ac { 'aliquot_tag': 'ALQ_7182559c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02425.RNA-Seq.R2_L005.A C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 181002_UNC31-K00269_0156_AHWN3HBBXX_CCGTCC_S26_L005_R2_001.fastq.gz 4800071059 FASTQ R2_L005 unaligned CPTAC3 081b2745-ad92-4431-b857-0a88900f49eb 26544825dc82ca24c0a107ef891284cc { 'aliquot_tag': 'ALQ_6b858f19', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02425.RNA-Seq.R2_L005.T C3N-02425 LSCC RNA-Seq tumor CPT0183250010 181002_UNC31-K00269_0156_AHWN3HBBXX_AGTCAA_S25_L005_R2_001.fastq.gz 3619589061 FASTQ R2_L005 unaligned CPTAC3 e7f746b3-1b4d-41e9-b059-a2a72b507717 0dce386f2121042626d20fb60f9288db { 'aliquot_tag': 'ALQ_7182559c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-02425.RNA-Seq.transcriptome.A.hg38 C3N-02425 LSCC RNA-Seq tissue_normal CPT0183270009 be9ccd0d-9c48-435d-8389-330cbd9dcedc.rna_seq.transcriptome.gdc_realn.bam 12754217671 BAM transcriptome harmonized CPTAC3 0e65a21b-285f-446f-ab58-9d8575c31737 a2fe6db563b29f2d585cb83f10e8f1d6 { 'aliquot_tag': 'ALQ_6b858f19', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02425.RNA-Seq.transcriptome.T.hg38 C3N-02425 LSCC RNA-Seq tumor CPT0183250010 65a931e7-d01c-4f9a-992d-6b34ab08c46d.rna_seq.transcriptome.gdc_realn.bam 10140660033 BAM transcriptome harmonized CPTAC3 14506509-c395-44cb-b732-5f1d4e4d750a dd175af5cc77f51d708d3f2908d0d05d { 'aliquot_tag': 'ALQ_7182559c', 'gdc_sample_type': 'Primary Tumor' } C3N-02425.WGS.A C3N-02425 LSCC WGS tissue_normal CPT0183270006 CPT0183270006.WholeGenome.RP-1303.bam 68113658987 BAM aligned CPTAC3 4fc9a6a1-4281-4db6-99d5-466e1d3fde02 8bd9563f1f0968e39335370a46849e63 { 'aliquot_tag': 'ALQ_fb3a9288', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31165,12 +33295,12 @@ C3N-02426.miRNA-Seq.T C3N-02426 LSCC miRNA-Seq tumor CPT0147180007 181219_UNC31- C3N-02426.miRNA-Seq.T.hg38 C3N-02426 LSCC miRNA-Seq tumor CPT0147180007 8e948cdc-b15f-4ea9-855d-34036fb52234_mirnaseq_gdc_realn.bam 221040104 BAM harmonized CPTAC3 ba8b2440-d911-4068-8edb-544defd4641f a2a3f9d0f1e47747954adf5d60719965 { 'aliquot_tag': 'ALQ_2b19763d', 'gdc_sample_type': 'Primary Tumor' } C3N-02426.RNA-Seq.chimeric.A.hg38 C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 f61e0f26-a020-4916-945d-6210ceee459a.rna_seq.chimeric.gdc_realn.bam 36200505 BAM chimeric harmonized CPTAC3 58b5e36d-9f1c-4790-8359-490611023006 16f20465db552b14ecbdc4970942817f { 'aliquot_tag': 'ALQ_eafa7fc4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02426.RNA-Seq.chimeric.T.hg38 C3N-02426 LSCC RNA-Seq tumor CPT0147180007 e21b561d-5b18-4ff2-ac57-8196dedefc4f.rna_seq.chimeric.gdc_realn.bam 25680492 BAM chimeric harmonized CPTAC3 37415724-65e6-4525-83b9-aab2b87abf2c d05578da0a1d3f1e5ee41bca03a91621 { 'aliquot_tag': 'ALQ_2b19763d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02426.RNA-Seq.genomic.A.hg38 C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 f61e0f26-a020-4916-945d-6210ceee459a.rna_seq.genomic.gdc_realn.bam 9717814275 BAM genomic harmonized CPTAC3 a9107e90-05dc-4c5e-a8f8-327c43fcb58d ad9a3aaca19c4ab2136a84426e15c9d0 { 'aliquot_tag': 'ALQ_eafa7fc4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02426.RNA-Seq.genomic.T.hg38 C3N-02426 LSCC RNA-Seq tumor CPT0147180007 e21b561d-5b18-4ff2-ac57-8196dedefc4f.rna_seq.genomic.gdc_realn.bam 7574831581 BAM genomic harmonized CPTAC3 02ed58e1-38da-4ea8-8eba-1e45b0ef2313 d857f2054333ea7382fbc81e77484ace { 'aliquot_tag': 'ALQ_2b19763d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02426.RNA-Seq.R1_L007.A C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 180925_UNC32-K00270_0122_BHWNF7BBXX_TAGCTT_S26_L007_R1_001.fastq.gz 4514700457 FASTQ R1_L007 unaligned CPTAC3 46c22361-74ec-42c0-ad46-43c4aba06e89 6ea1f6d4ce53f8abcb253f17c480553c { 'aliquot_tag': 'ALQ_eafa7fc4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02426.RNA-Seq.R1_L007.T C3N-02426 LSCC RNA-Seq tumor CPT0147180007 180925_UNC32-K00270_0122_BHWNF7BBXX_GATCAG_S25_L007_R1_001.fastq.gz 3387627512 FASTQ R1_L007 unaligned CPTAC3 1c4b2b7b-1d51-4b3b-89af-2f8f2b40f915 0222f4bd713642c1d3a54b76c3e67711 { 'aliquot_tag': 'ALQ_2b19763d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02426.RNA-Seq.R2_L007.A C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 180925_UNC32-K00270_0122_BHWNF7BBXX_TAGCTT_S26_L007_R2_001.fastq.gz 4748763277 FASTQ R2_L007 unaligned CPTAC3 8346022d-abce-41d8-a26b-ffc567871e59 92f6752b9c7e2949d24b04367d2792ee { 'aliquot_tag': 'ALQ_eafa7fc4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02426.RNA-Seq.R2_L007.T C3N-02426 LSCC RNA-Seq tumor CPT0147180007 180925_UNC32-K00270_0122_BHWNF7BBXX_GATCAG_S25_L007_R2_001.fastq.gz 3578674027 FASTQ R2_L007 unaligned CPTAC3 e6a00b5b-fb4e-4f9a-b188-517f09f6a6ad 4d93590fc4935c2905dd8938f3089018 { 'aliquot_tag': 'ALQ_2b19763d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02426.RNA-Seq.genomic.A.hg38 C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 f61e0f26-a020-4916-945d-6210ceee459a.rna_seq.genomic.gdc_realn.bam 9717814275 BAM genomic harmonized CPTAC3 1d861f87-97e3-48d5-9428-aba0f9bebb1e ad9a3aaca19c4ab2136a84426e15c9d0 { 'aliquot_tag': 'ALQ_eafa7fc4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02426.RNA-Seq.genomic.T.hg38 C3N-02426 LSCC RNA-Seq tumor CPT0147180007 e21b561d-5b18-4ff2-ac57-8196dedefc4f.rna_seq.genomic.gdc_realn.bam 7574831581 BAM genomic harmonized CPTAC3 1b99b18b-6638-4027-b77f-38f5df312955 d857f2054333ea7382fbc81e77484ace { 'aliquot_tag': 'ALQ_2b19763d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02426.RNA-Seq.R1_L007.A C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 180925_UNC32-K00270_0122_BHWNF7BBXX_TAGCTT_S26_L007_R1_001.fastq.gz 4514700457 FASTQ R1_L007 unaligned CPTAC3 46c22361-74ec-42c0-ad46-43c4aba06e89 6ea1f6d4ce53f8abcb253f17c480553c { 'aliquot_tag': 'ALQ_eafa7fc4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02426.RNA-Seq.R1_L007.T C3N-02426 LSCC RNA-Seq tumor CPT0147180007 180925_UNC32-K00270_0122_BHWNF7BBXX_GATCAG_S25_L007_R1_001.fastq.gz 3387627512 FASTQ R1_L007 unaligned CPTAC3 1c4b2b7b-1d51-4b3b-89af-2f8f2b40f915 0222f4bd713642c1d3a54b76c3e67711 { 'aliquot_tag': 'ALQ_2b19763d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02426.RNA-Seq.R2_L007.A C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 180925_UNC32-K00270_0122_BHWNF7BBXX_TAGCTT_S26_L007_R2_001.fastq.gz 4748763277 FASTQ R2_L007 unaligned CPTAC3 8346022d-abce-41d8-a26b-ffc567871e59 92f6752b9c7e2949d24b04367d2792ee { 'aliquot_tag': 'ALQ_eafa7fc4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02426.RNA-Seq.R2_L007.T C3N-02426 LSCC RNA-Seq tumor CPT0147180007 180925_UNC32-K00270_0122_BHWNF7BBXX_GATCAG_S25_L007_R2_001.fastq.gz 3578674027 FASTQ R2_L007 unaligned CPTAC3 e6a00b5b-fb4e-4f9a-b188-517f09f6a6ad 4d93590fc4935c2905dd8938f3089018 { 'aliquot_tag': 'ALQ_2b19763d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02426.RNA-Seq.transcriptome.A.hg38 C3N-02426 LSCC RNA-Seq tissue_normal CPT0147200006 f61e0f26-a020-4916-945d-6210ceee459a.rna_seq.transcriptome.gdc_realn.bam 12366927083 BAM transcriptome harmonized CPTAC3 1c4ec1ea-de71-4ab8-b165-0a3ee67386a5 a852e44542f234cb0e8a38f5cd270ce1 { 'aliquot_tag': 'ALQ_eafa7fc4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02426.RNA-Seq.transcriptome.T.hg38 C3N-02426 LSCC RNA-Seq tumor CPT0147180007 e21b561d-5b18-4ff2-ac57-8196dedefc4f.rna_seq.transcriptome.gdc_realn.bam 9674806663 BAM transcriptome harmonized CPTAC3 02271f9f-59de-411f-a901-dab7fbdba07d 0c1f94d2011551a067ce1fc68334624a { 'aliquot_tag': 'ALQ_2b19763d', 'gdc_sample_type': 'Primary Tumor' } C3N-02426.WGS.A C3N-02426 LSCC WGS tissue_normal CPT0147200009 CPT0147200009.WholeGenome.RP-1303.bam 69936875814 BAM aligned CPTAC3 6062123c-8635-4572-a011-6617f84bf64a 15f326bd9be2e7cc8f42964cc8575790 { 'aliquot_tag': 'ALQ_7a456255', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31191,16 +33321,16 @@ C3N-02429.miRNA-Seq.A C3N-02429 CCRCC miRNA-Seq tissue_normal CPT0147300006 1901 C3N-02429.miRNA-Seq.A.hg38 C3N-02429 CCRCC miRNA-Seq tissue_normal CPT0147300006 50a60b30-fe26-4015-93cd-d085ad9791b9_mirnaseq_gdc_realn.bam 295785516 BAM harmonized CPTAC3 677b4a36-cfcf-4af0-9f21-92fcf9852faf fedd9cf16221fa42ffc12b6bfad57b87 { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02429.miRNA-Seq.T C3N-02429 CCRCC miRNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0176_AHYGLVBBXX_TAATCG_S42_L005_R1_001.unaln.bam 196560236 BAM unaligned CPTAC3 fcf9819e-476a-4cf9-8548-de89df79361b 8446f2db94cd6e7e970da6c416d319db { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor' } C3N-02429.miRNA-Seq.T.hg38 C3N-02429 CCRCC miRNA-Seq tumor CPT0147280007 58aeeeca-03df-45a2-8685-3d7dadd47aba_mirnaseq_gdc_realn.bam 212208150 BAM harmonized CPTAC3 335cc426-e08f-41bc-865f-f302d148a9d1 688830952be4986f1f2b4fb504e48a73 { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor' } -C3N-02429.RNA-Seq.chimeric.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 ee296497-3c14-4798-af49-9bce1678c856.rna_seq.chimeric.gdc_realn.bam 95871036 BAM chimeric harmonized CPTAC3 00ff5503-0303-4e6a-8238-06815b8b1107 fcaac365a068a08a122074a9423a6e78 { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02429.RNA-Seq.chimeric.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 a3caf835-82e0-4546-8ada-4969b0a37c5a.rna_seq.chimeric.gdc_realn.bam 60032651 BAM chimeric harmonized CPTAC3 26bcef58-7a5c-43f7-83d0-2c540063055c 0028b3bffda19e63dc0b43bfdc2d9cf9 { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor' } -C3N-02429.RNA-Seq.genomic.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 ee296497-3c14-4798-af49-9bce1678c856.rna_seq.genomic.gdc_realn.bam 9961223004 BAM genomic harmonized CPTAC3 c6e93fbd-1187-46e1-9eb5-8b90f82d8ca8 78713eb36c30c89a8fb99e3cc9539d20 { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02429.RNA-Seq.genomic.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 a3caf835-82e0-4546-8ada-4969b0a37c5a.rna_seq.genomic.gdc_realn.bam 8389528542 BAM genomic harmonized CPTAC3 e0ee8910-bce0-4443-a82b-7101aef075f3 9eedf7d8e14ee404ea4a5bbcafdd924f { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor' } -C3N-02429.RNA-Seq.R1_L006.T C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L006_R1_001.fastq.gz 4176818424 FASTQ R1_L006 unaligned CPTAC3 d1aa949a-96ca-4221-907c-cf3fbc0b3ff9 c785aa658226036652516d18e89c197a { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor' } -C3N-02429.RNA-Seq.R1_L007.A C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 190117_UNC31-K00269_0180_AH35VKBBXY_GTGGCC_S19_L007_R1_001.fastq.gz 4345438144 FASTQ R1_L007 unaligned CPTAC3 308c1f98-d5e0-4e59-904c-5b94de80d70d 167ff27c8767c71946f7b318285404fd { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02429.RNA-Seq.R2_L006.T C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L006_R2_001.fastq.gz 4167913017 FASTQ R2_L006 unaligned CPTAC3 c4e77c72-3cc0-4ed1-95a0-0b77db5ae585 dfbe1b500166308063042e458829748b { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor' } -C3N-02429.RNA-Seq.R2_L007.A C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 190117_UNC31-K00269_0180_AH35VKBBXY_GTGGCC_S19_L007_R2_001.fastq.gz 4741614628 FASTQ R2_L007 unaligned CPTAC3 fb6e5799-3f00-4cdf-a04f-3d7aef5103de 07b1b2490701be7d15cac9c98ff4fe81 { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02429.RNA-Seq.transcriptome.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 ee296497-3c14-4798-af49-9bce1678c856.rna_seq.transcriptome.gdc_realn.bam 10130557863 BAM transcriptome harmonized CPTAC3 babe57bf-f4ac-4189-bab4-982268dfc37f c5707bcf56fc8d3d19d05f06519aea2d { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02429.RNA-Seq.transcriptome.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 a3caf835-82e0-4546-8ada-4969b0a37c5a.rna_seq.transcriptome.gdc_realn.bam 10247184581 BAM transcriptome harmonized CPTAC3 87899211-ee53-4056-a5d1-b91fc72a1661 3ed2e3348deb068612c5478d70100f32 { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor' } +C3N-02429.RNA-Seq.chimeric.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 b6e050b2-fb1f-40b1-a15e-e5d828bec4ad.rna_seq.chimeric.gdc_realn.bam 95841647 BAM chimeric harmonized CPTAC3 f465b094-1f54-4c22-a645-756091b46703 885b339e22d5e2bc4da4cfec3330b5f9 { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02429.RNA-Seq.chimeric.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 ed9e64df-6f03-4451-94b0-3f9460da2e86.rna_seq.chimeric.gdc_realn.bam 60019868 BAM chimeric harmonized CPTAC3 975f6ac9-f96d-4962-9d70-dc8c34957c95 81df1becfd259850dd38573295c6f0ac { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor' } +C3N-02429.RNA-Seq.genomic.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 b6e050b2-fb1f-40b1-a15e-e5d828bec4ad.rna_seq.genomic.gdc_realn.bam 9962072914 BAM genomic harmonized CPTAC3 2e2c4036-122e-4d92-a81b-3f1be0c7085c 773589d0fb37caa5ea38851c8d219879 { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02429.RNA-Seq.genomic.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 ed9e64df-6f03-4451-94b0-3f9460da2e86.rna_seq.genomic.gdc_realn.bam 8390892882 BAM genomic harmonized CPTAC3 6f09f414-e13b-4406-809e-b0e374b02f8c 557691d0d9990be40de77ce6fad3e80f { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor' } +C3N-02429.RNA-Seq.R1_L006.T C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L006_R1_001.fastq.gz 4176818424 FASTQ R1_L006 unaligned CPTAC3 d1aa949a-96ca-4221-907c-cf3fbc0b3ff9 c785aa658226036652516d18e89c197a { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02429.RNA-Seq.R1_L007.A C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 190117_UNC31-K00269_0180_AH35VKBBXY_GTGGCC_S19_L007_R1_001.fastq.gz 4345438144 FASTQ R1_L007 unaligned CPTAC3 308c1f98-d5e0-4e59-904c-5b94de80d70d 167ff27c8767c71946f7b318285404fd { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02429.RNA-Seq.R2_L006.T C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 190108_UNC31-K00269_0177_BH32KTBBXY_GTGAAA_S22_L006_R2_001.fastq.gz 4167913017 FASTQ R2_L006 unaligned CPTAC3 c4e77c72-3cc0-4ed1-95a0-0b77db5ae585 dfbe1b500166308063042e458829748b { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02429.RNA-Seq.R2_L007.A C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 190117_UNC31-K00269_0180_AH35VKBBXY_GTGGCC_S19_L007_R2_001.fastq.gz 4741614628 FASTQ R2_L007 unaligned CPTAC3 fb6e5799-3f00-4cdf-a04f-3d7aef5103de 07b1b2490701be7d15cac9c98ff4fe81 { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02429.RNA-Seq.transcriptome.A.hg38 C3N-02429 CCRCC RNA-Seq tissue_normal CPT0147300006 b6e050b2-fb1f-40b1-a15e-e5d828bec4ad.rna_seq.transcriptome.gdc_realn.bam 11614986306 BAM transcriptome harmonized CPTAC3 c01f92ff-9bbf-4f88-872d-2c73516579d3 4bbc4ab3c3a188d69b57aefc9554ae76 { 'aliquot_tag': 'ALQ_21a6ac61', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02429.RNA-Seq.transcriptome.T.hg38 C3N-02429 CCRCC RNA-Seq tumor CPT0147280007 ed9e64df-6f03-4451-94b0-3f9460da2e86.rna_seq.transcriptome.gdc_realn.bam 11566892255 BAM transcriptome harmonized CPTAC3 c02a87c7-9d1b-4e60-89e5-2f1bfe3447e2 1c9aa2f786e031b4a224b354c7cfbb76 { 'aliquot_tag': 'ALQ_ad8d0493', 'gdc_sample_type': 'Primary Tumor' } C3N-02429.WGS.N C3N-02429 CCRCC WGS blood_normal CPT0147310002 CPT0147310002.WholeGenome.RP-1303.bam 104664377280 BAM aligned CPTAC3 419a466d-4c5b-4c2f-a63a-08de046f67d5 b2649e01e9f146a747c0866f64f9d9f4 { 'aliquot_tag': 'ALQ_1bab41c8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02429.WGS.N.hg38 C3N-02429 CCRCC WGS blood_normal CPT0147310002 408bb107-9884-4af4-88df-7e0012ce26d3_wgs_gdc_realn.bam 152219181292 BAM harmonized CPTAC3 a963bf8d-4bf5-4f8c-b9dd-f541dfde772d 2872dc1c1c7af84961a8de527c6db0c3 { 'aliquot_tag': 'ALQ_1bab41c8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02429.WGS.T C3N-02429 CCRCC WGS tumor CPT0147280010 CPT0147280010.WholeGenome.RP-1303.bam 97608013192 BAM aligned CPTAC3 7540d74c-251a-415a-b123-5015a5c93e78 86b86f67a87134b12d3e7feb31cc499a { 'aliquot_tag': 'ALQ_2af2a071', 'gdc_sample_type': 'Primary Tumor' } @@ -31217,16 +33347,16 @@ C3N-02431.miRNA-Seq.A C3N-02431 CCRCC miRNA-Seq tissue_normal CPT0183350009 1901 C3N-02431.miRNA-Seq.A.hg38 C3N-02431 CCRCC miRNA-Seq tissue_normal CPT0183350009 ccf62edc-c023-44eb-abbb-537b657b9efa_mirnaseq_gdc_realn.bam 264827074 BAM harmonized CPTAC3 d4ebc59e-649d-4e5b-a8f1-ede048d0dd5c 02aa7f0e91af8edede497ffcffee4d95 { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02431.miRNA-Seq.T C3N-02431 CCRCC miRNA-Seq tumor CPT0183360010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTATAC_S39_L005_R1_001.unaln.bam 222831874 BAM unaligned CPTAC3 1ff285a5-cd88-468d-a620-556f158b65b8 e25b2cd5a7aeb20263c253f37cdfd304 { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor' } C3N-02431.miRNA-Seq.T.hg38 C3N-02431 CCRCC miRNA-Seq tumor CPT0183360010 0aab963a-cc49-47b3-af0d-13ae08494949_mirnaseq_gdc_realn.bam 246190441 BAM harmonized CPTAC3 eed8656f-8c9c-46ef-9171-2c9f1861fdb7 a57dd602cd8e8f561239892069f093c5 { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02431.RNA-Seq.chimeric.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 d1b5cd2a-c874-468c-af1c-33e54ef9d269.rna_seq.chimeric.gdc_realn.bam 44991863 BAM chimeric harmonized CPTAC3 69c987a8-1386-487a-b328-200fbe3ed286 efe26bc7113770007dd5f98bbe94d895 { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02431.RNA-Seq.chimeric.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 0b5398d7-61f9-4f16-9542-16b0f3963b08.rna_seq.chimeric.gdc_realn.bam 36481923 BAM chimeric harmonized CPTAC3 8ad29fa4-f3b0-43bf-add9-a4ae025e84d7 e500a52b0b39388257755e953dadd50d { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02431.RNA-Seq.genomic.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 d1b5cd2a-c874-468c-af1c-33e54ef9d269.rna_seq.genomic.gdc_realn.bam 9471334115 BAM genomic harmonized CPTAC3 d8817e63-7e7c-4fe9-9d55-d66d5ee48ce5 f08a9e3586fe7605bae45cd6a2aa537b { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02431.RNA-Seq.genomic.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 0b5398d7-61f9-4f16-9542-16b0f3963b08.rna_seq.genomic.gdc_realn.bam 7479800871 BAM genomic harmonized CPTAC3 124a6e53-a96e-4f04-9ca0-498134f89a00 4773e1be9dfad7a78ca38d23e7cda570 { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02431.RNA-Seq.R1_L002.A C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L002_R1_001.fastq.gz 4438705682 FASTQ R1_L002 unaligned CPTAC3 4469beff-be49-4f84-b01e-6755fb50d1dc 041bc6802c8fc7f40c83b0cb248663e7 { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02431.RNA-Seq.R1_L008.T C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L008_R1_001.fastq.gz 3564454984 FASTQ R1_L008 unaligned CPTAC3 5277ce10-1648-495b-9c1f-1bafacfc0edf eb201a20f733b9dd3c1e013b6c60daaa { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02431.RNA-Seq.R2_L002.A C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L002_R2_001.fastq.gz 4303117253 FASTQ R2_L002 unaligned CPTAC3 e7ab8afe-fefa-48b6-a8bf-b9df7fc71c3a ba1bc4dcb52f0ac3dc9d13e184507643 { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02431.RNA-Seq.R2_L008.T C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L008_R2_001.fastq.gz 3801920665 FASTQ R2_L008 unaligned CPTAC3 b2af3af4-1c59-4102-87cd-19bc734654e7 ceddffc7a58b489e395b373946b0417f { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02431.RNA-Seq.transcriptome.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 d1b5cd2a-c874-468c-af1c-33e54ef9d269.rna_seq.transcriptome.gdc_realn.bam 8781994035 BAM transcriptome harmonized CPTAC3 7bc663af-e692-44be-90d4-15ce432e3740 dc35bde1ad6ba5c4680370f96ee78962 { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02431.RNA-Seq.transcriptome.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 0b5398d7-61f9-4f16-9542-16b0f3963b08.rna_seq.transcriptome.gdc_realn.bam 8835999561 BAM transcriptome harmonized CPTAC3 2cf3ae33-3a95-4fca-929a-5373cc994830 2afe6729093281404da59d5409c41006 { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02431.RNA-Seq.chimeric.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 1fa1da9a-4639-4723-9784-fa679726c224.rna_seq.chimeric.gdc_realn.bam 44971291 BAM chimeric harmonized CPTAC3 aaa62b87-6ace-46b4-8f41-f6e1c4e5db78 d183a3b72a3a8e96a403a2e49dfe1a7f { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02431.RNA-Seq.chimeric.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 9fb0806f-3749-4b1f-a798-3946ee5249e0.rna_seq.chimeric.gdc_realn.bam 36451586 BAM chimeric harmonized CPTAC3 85d9c7a3-b7a1-430e-b1b3-8bce88420e4c a6f3f98755974d36ea5c886622bf1bc6 { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02431.RNA-Seq.genomic.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 1fa1da9a-4639-4723-9784-fa679726c224.rna_seq.genomic.gdc_realn.bam 9472440199 BAM genomic harmonized CPTAC3 8b5b3272-62d2-4e6e-9c4c-ce9b475ed314 73910ab62675543f4fad2517b61af3ce { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02431.RNA-Seq.genomic.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 9fb0806f-3749-4b1f-a798-3946ee5249e0.rna_seq.genomic.gdc_realn.bam 7481039104 BAM genomic harmonized CPTAC3 26ee70d9-6bf0-41fa-be5d-d89f88974c41 ced30efa8c2f45a218e15c47ee414340 { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02431.RNA-Seq.R1_L002.A C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L002_R1_001.fastq.gz 4438705682 FASTQ R1_L002 unaligned CPTAC3 4469beff-be49-4f84-b01e-6755fb50d1dc 041bc6802c8fc7f40c83b0cb248663e7 { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02431.RNA-Seq.R1_L008.T C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L008_R1_001.fastq.gz 3564454984 FASTQ R1_L008 unaligned CPTAC3 5277ce10-1648-495b-9c1f-1bafacfc0edf eb201a20f733b9dd3c1e013b6c60daaa { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02431.RNA-Seq.R2_L002.A C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L002_R2_001.fastq.gz 4303117253 FASTQ R2_L002 unaligned CPTAC3 e7ab8afe-fefa-48b6-a8bf-b9df7fc71c3a ba1bc4dcb52f0ac3dc9d13e184507643 { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02431.RNA-Seq.R2_L008.T C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L008_R2_001.fastq.gz 3801920665 FASTQ R2_L008 unaligned CPTAC3 b2af3af4-1c59-4102-87cd-19bc734654e7 ceddffc7a58b489e395b373946b0417f { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02431.RNA-Seq.transcriptome.A.hg38 C3N-02431 CCRCC RNA-Seq tissue_normal CPT0183350009 1fa1da9a-4639-4723-9784-fa679726c224.rna_seq.transcriptome.gdc_realn.bam 10029244047 BAM transcriptome harmonized CPTAC3 3481741b-2c65-48b5-84fd-52de993e85d0 e2dc849d1199da81cb9865930840d68d { 'aliquot_tag': 'ALQ_da190fdc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02431.RNA-Seq.transcriptome.T.hg38 C3N-02431 CCRCC RNA-Seq tumor CPT0183360010 9fb0806f-3749-4b1f-a798-3946ee5249e0.rna_seq.transcriptome.gdc_realn.bam 10100512282 BAM transcriptome harmonized CPTAC3 77118153-1b15-400c-9186-820b8543977a feb9ddc2adafd2d95a11e98cb59e5455 { 'aliquot_tag': 'ALQ_fd7efce9', 'gdc_sample_type': 'Primary Tumor' } C3N-02431.WGS.N C3N-02431 CCRCC WGS blood_normal CPT0183410002 CPT0183410002.WholeGenome.RP-1303.bam 99924278854 BAM aligned CPTAC3 3ce92c10-4c64-4c03-b0b8-1add86e635b3 5014bec9b0f1b82483019e12df879d3d { 'aliquot_tag': 'ALQ_a54e402c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02431.WGS.N.hg38 C3N-02431 CCRCC WGS blood_normal CPT0183410002 8836c002-6b85-4c30-97cf-8ba51924f07a_wgs_gdc_realn.bam 143220227850 BAM harmonized CPTAC3 9e828b23-4d5a-4c78-bee2-e1a6f93ebb64 f67bdd049ba43970593d3721724e4ff3 { 'aliquot_tag': 'ALQ_a54e402c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02431.WGS.T C3N-02431 CCRCC WGS tumor CPT0183360007 CPT0183360007.WholeGenome.RP-1303.bam 103210485964 BAM aligned CPTAC3 d2705e47-74d5-413a-90d8-53e1aa116c61 fa4b91a4a6dbb554be21fe87bf262960 { 'aliquot_tag': 'ALQ_7a01580b', 'gdc_sample_type': 'Primary Tumor' } @@ -31247,12 +33377,12 @@ C3N-02433.miRNA-Seq.T C3N-02433 LUAD miRNA-Seq tumor CPT0147380007 181108_UNC31- C3N-02433.miRNA-Seq.T.hg38 C3N-02433 LUAD miRNA-Seq tumor CPT0147380007 ae6e9617-2369-4201-a9f1-0fbe5e1da88e_mirnaseq_gdc_realn.bam 278051206 BAM harmonized CPTAC3 0f05feff-c57e-4af1-97db-512151c9c2f2 8f8bfdc76b1050c3ba31efee18798ce9 { 'aliquot_tag': 'ALQ_66d1d736', 'gdc_sample_type': 'Primary Tumor' } C3N-02433.RNA-Seq.chimeric.A.hg38 C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 00f101b7-9798-46df-9036-70c7b23c781f.rna_seq.chimeric.gdc_realn.bam 116363936 BAM chimeric harmonized CPTAC3 7801774d-87a9-48c4-805e-7af49bee1d7b b52340c6e19c3b2551cc56e58b3b89bd { 'aliquot_tag': 'ALQ_3ca39cd9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02433.RNA-Seq.chimeric.T.hg38 C3N-02433 LUAD RNA-Seq tumor CPT0147380007 a79e9f55-9c05-4b52-a55c-5f3733af3df8.rna_seq.chimeric.gdc_realn.bam 47217725 BAM chimeric harmonized CPTAC3 f3b82540-3dc3-4e05-8da8-e58311940168 b53773f739e2bf67588c3bbba1dff1b8 { 'aliquot_tag': 'ALQ_66d1d736', 'gdc_sample_type': 'Primary Tumor' } -C3N-02433.RNA-Seq.genomic.A.hg38 C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 00f101b7-9798-46df-9036-70c7b23c781f.rna_seq.genomic.gdc_realn.bam 9735666765 BAM genomic harmonized CPTAC3 bd8cf00d-7d08-40e4-b1ac-e0b9db108ee7 2852b96c1315cdda2d250528f5e350e0 { 'aliquot_tag': 'ALQ_3ca39cd9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02433.RNA-Seq.genomic.T.hg38 C3N-02433 LUAD RNA-Seq tumor CPT0147380007 a79e9f55-9c05-4b52-a55c-5f3733af3df8.rna_seq.genomic.gdc_realn.bam 9701309554 BAM genomic harmonized CPTAC3 1dbc3525-3397-445b-847b-ebb8bd85a6c3 84b7eb5692cfbf39549c58d362b9e324 { 'aliquot_tag': 'ALQ_66d1d736', 'gdc_sample_type': 'Primary Tumor' } -C3N-02433.RNA-Seq.R1_L001.A C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L001_R1_001.fastq.gz 4452697529 FASTQ R1_L001 unaligned CPTAC3 bc1582f7-fa85-430f-beff-420f015df598 c6c9282d5f80c6b0204b7b6bfb643b2f { 'aliquot_tag': 'ALQ_3ca39cd9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02433.RNA-Seq.R1_L007.T C3N-02433 LUAD RNA-Seq tumor CPT0147380007 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L007_R1_001.fastq.gz 4590905055 FASTQ R1_L007 unaligned CPTAC3 97451b25-7512-433e-ab1b-bedbfb04a884 754782571390fd60c588b625ac4cf88f { 'aliquot_tag': 'ALQ_66d1d736', 'gdc_sample_type': 'Primary Tumor' } -C3N-02433.RNA-Seq.R2_L001.A C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L001_R2_001.fastq.gz 4941418364 FASTQ R2_L001 unaligned CPTAC3 7798fd3f-e078-4519-804f-9b41b79de825 bb298fa7cb4f81b71ac8aa7d385bc247 { 'aliquot_tag': 'ALQ_3ca39cd9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02433.RNA-Seq.R2_L007.T C3N-02433 LUAD RNA-Seq tumor CPT0147380007 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L007_R2_001.fastq.gz 4717482758 FASTQ R2_L007 unaligned CPTAC3 a123cddc-0050-460a-a8b6-4c9d24a48d57 507c950c68d35b42e7b29bd161729c8c { 'aliquot_tag': 'ALQ_66d1d736', 'gdc_sample_type': 'Primary Tumor' } +C3N-02433.RNA-Seq.genomic.A.hg38 C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 00f101b7-9798-46df-9036-70c7b23c781f.rna_seq.genomic.gdc_realn.bam 9735666765 BAM genomic harmonized CPTAC3 74d92f06-5512-440e-82a2-e7208877560a 2852b96c1315cdda2d250528f5e350e0 { 'aliquot_tag': 'ALQ_3ca39cd9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02433.RNA-Seq.genomic.T.hg38 C3N-02433 LUAD RNA-Seq tumor CPT0147380007 a79e9f55-9c05-4b52-a55c-5f3733af3df8.rna_seq.genomic.gdc_realn.bam 9701309554 BAM genomic harmonized CPTAC3 34a0b54d-59c8-4530-895e-5c8bd1be2dd9 84b7eb5692cfbf39549c58d362b9e324 { 'aliquot_tag': 'ALQ_66d1d736', 'gdc_sample_type': 'Primary Tumor' } +C3N-02433.RNA-Seq.R1_L001.A C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L001_R1_001.fastq.gz 4452697529 FASTQ R1_L001 unaligned CPTAC3 bc1582f7-fa85-430f-beff-420f015df598 c6c9282d5f80c6b0204b7b6bfb643b2f { 'aliquot_tag': 'ALQ_3ca39cd9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-02433.RNA-Seq.R1_L007.T C3N-02433 LUAD RNA-Seq tumor CPT0147380007 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L007_R1_001.fastq.gz 4590905055 FASTQ R1_L007 unaligned CPTAC3 97451b25-7512-433e-ab1b-bedbfb04a884 754782571390fd60c588b625ac4cf88f { 'aliquot_tag': 'ALQ_66d1d736', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02433.RNA-Seq.R2_L001.A C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 180508_UNC31-K00269_0128_BHTY7KBBXX_CAGATC_S2_L001_R2_001.fastq.gz 4941418364 FASTQ R2_L001 unaligned CPTAC3 7798fd3f-e078-4519-804f-9b41b79de825 bb298fa7cb4f81b71ac8aa7d385bc247 { 'aliquot_tag': 'ALQ_3ca39cd9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-02433.RNA-Seq.R2_L007.T C3N-02433 LUAD RNA-Seq tumor CPT0147380007 180502_UNC32-K00270_0094_BHTVLMBBXX_CCGTCC_S1_L007_R2_001.fastq.gz 4717482758 FASTQ R2_L007 unaligned CPTAC3 a123cddc-0050-460a-a8b6-4c9d24a48d57 507c950c68d35b42e7b29bd161729c8c { 'aliquot_tag': 'ALQ_66d1d736', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02433.RNA-Seq.transcriptome.A.hg38 C3N-02433 LUAD RNA-Seq tissue_normal CPT0147400006 00f101b7-9798-46df-9036-70c7b23c781f.rna_seq.transcriptome.gdc_realn.bam 11606713666 BAM transcriptome harmonized CPTAC3 9640cc2b-8e44-429f-9108-df9beaf55c0e 1efe0a8989e4fbfac95cca3d57a7435e { 'aliquot_tag': 'ALQ_3ca39cd9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02433.RNA-Seq.transcriptome.T.hg38 C3N-02433 LUAD RNA-Seq tumor CPT0147380007 a79e9f55-9c05-4b52-a55c-5f3733af3df8.rna_seq.transcriptome.gdc_realn.bam 11860345844 BAM transcriptome harmonized CPTAC3 756fe12e-1374-407c-ad03-8253c1651f7f af49ddc700f91719ef0e46f1ff1e4158 { 'aliquot_tag': 'ALQ_66d1d736', 'gdc_sample_type': 'Primary Tumor' } C3N-02433.WGS.A C3N-02433 LUAD WGS tissue_normal CPT0147400009 CPT0147400009.WholeGenome.RP-1303.bam 60810496752 BAM aligned CPTAC3 0ee0f175-841c-453f-8a2c-1cebb4b25a9e a7db15ce0f5aaa233a1f89f7e0ddb074 { 'aliquot_tag': 'ALQ_ac1c8148', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31277,12 +33407,12 @@ C3N-02434.miRNA-Seq.T C3N-02434 LSCC miRNA-Seq tumor CPT0115830006 181219_UNC31- C3N-02434.miRNA-Seq.T.hg38 C3N-02434 LSCC miRNA-Seq tumor CPT0115830006 8a40d1e7-758b-4ecc-92db-78a63b1d3645_mirnaseq_gdc_realn.bam 265913623 BAM harmonized CPTAC3 b7c36fef-5fb8-48bd-8def-f4191a08bb76 40bf747bd064f04f863eca0afe7ebdf9 { 'aliquot_tag': 'ALQ_d3be393f', 'gdc_sample_type': 'Primary Tumor' } C3N-02434.RNA-Seq.chimeric.A.hg38 C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 57fdf583-aa52-475c-b951-6652b9c1a957.rna_seq.chimeric.gdc_realn.bam 27492820 BAM chimeric harmonized CPTAC3 720766b3-06ee-4cdb-b8e8-ae9a2526283e 03636166c4fd752dc2c32a6cb22261c4 { 'aliquot_tag': 'ALQ_8be1abde', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02434.RNA-Seq.chimeric.T.hg38 C3N-02434 LSCC RNA-Seq tumor CPT0115830006 48d294db-a4f2-47ce-8765-716750a3e580.rna_seq.chimeric.gdc_realn.bam 30917503 BAM chimeric harmonized CPTAC3 5dc82dff-53fa-4d0d-8913-8ebe3dfcbee8 a9f2b536356532b12cbdfc826f91b5d6 { 'aliquot_tag': 'ALQ_d3be393f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02434.RNA-Seq.genomic.A.hg38 C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 57fdf583-aa52-475c-b951-6652b9c1a957.rna_seq.genomic.gdc_realn.bam 7566054442 BAM genomic harmonized CPTAC3 96a19f21-9202-42d5-b6fb-d0ca681b2d92 a5f69028d9c67e2649ec6e4d372dac43 { 'aliquot_tag': 'ALQ_8be1abde', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02434.RNA-Seq.genomic.T.hg38 C3N-02434 LSCC RNA-Seq tumor CPT0115830006 48d294db-a4f2-47ce-8765-716750a3e580.rna_seq.genomic.gdc_realn.bam 9683575190 BAM genomic harmonized CPTAC3 9f2bac0c-19dc-44d0-85f6-d5203a9b948c 221641d5410c4dab38532edbefa8ef6f { 'aliquot_tag': 'ALQ_d3be393f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02434.RNA-Seq.R1_L004.A C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTTGA_S16_L004_R1_001.fastq.gz 3619815406 FASTQ R1_L004 unaligned CPTAC3 afc88f36-8755-4d30-9c5b-1522cfc1b664 485da95b02f366007256f4db8f88aeaa { 'aliquot_tag': 'ALQ_8be1abde', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02434.RNA-Seq.R1_L005.T C3N-02434 LSCC RNA-Seq tumor CPT0115830006 180925_UNC32-K00270_0122_BHWNF7BBXX_TTAGGC_S17_L005_R1_001.fastq.gz 4325041872 FASTQ R1_L005 unaligned CPTAC3 e4f87c94-a026-4efc-9fcb-3a986805b519 deb9bfc7b96c22c4954380626a70dc08 { 'aliquot_tag': 'ALQ_d3be393f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02434.RNA-Seq.R2_L004.A C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTTGA_S16_L004_R2_001.fastq.gz 3839334209 FASTQ R2_L004 unaligned CPTAC3 791437f7-5d32-4ba3-9cf7-28b1c7a7efa2 fab0843e15b025db953681f4f59e0d82 { 'aliquot_tag': 'ALQ_8be1abde', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02434.RNA-Seq.R2_L005.T C3N-02434 LSCC RNA-Seq tumor CPT0115830006 180925_UNC32-K00270_0122_BHWNF7BBXX_TTAGGC_S17_L005_R2_001.fastq.gz 4503446918 FASTQ R2_L005 unaligned CPTAC3 4f26ed28-b994-4b20-bc67-806e8a36a1ca b614556634ba515bf018728db2cefbb7 { 'aliquot_tag': 'ALQ_d3be393f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02434.RNA-Seq.genomic.A.hg38 C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 57fdf583-aa52-475c-b951-6652b9c1a957.rna_seq.genomic.gdc_realn.bam 7566054442 BAM genomic harmonized CPTAC3 451d87b7-f03b-42c7-b119-df1a6c423513 a5f69028d9c67e2649ec6e4d372dac43 { 'aliquot_tag': 'ALQ_8be1abde', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02434.RNA-Seq.genomic.T.hg38 C3N-02434 LSCC RNA-Seq tumor CPT0115830006 48d294db-a4f2-47ce-8765-716750a3e580.rna_seq.genomic.gdc_realn.bam 9683575190 BAM genomic harmonized CPTAC3 02c3a9e4-bf37-4836-bd2f-ce1a821b95c6 221641d5410c4dab38532edbefa8ef6f { 'aliquot_tag': 'ALQ_d3be393f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02434.RNA-Seq.R1_L004.A C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTTGA_S16_L004_R1_001.fastq.gz 3619815406 FASTQ R1_L004 unaligned CPTAC3 afc88f36-8755-4d30-9c5b-1522cfc1b664 485da95b02f366007256f4db8f88aeaa { 'aliquot_tag': 'ALQ_8be1abde', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02434.RNA-Seq.R1_L005.T C3N-02434 LSCC RNA-Seq tumor CPT0115830006 180925_UNC32-K00270_0122_BHWNF7BBXX_TTAGGC_S17_L005_R1_001.fastq.gz 4325041872 FASTQ R1_L005 unaligned CPTAC3 e4f87c94-a026-4efc-9fcb-3a986805b519 deb9bfc7b96c22c4954380626a70dc08 { 'aliquot_tag': 'ALQ_d3be393f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02434.RNA-Seq.R2_L004.A C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 180926_UNC31-K00269_0155_AHWN7WBBXX_ACTTGA_S16_L004_R2_001.fastq.gz 3839334209 FASTQ R2_L004 unaligned CPTAC3 791437f7-5d32-4ba3-9cf7-28b1c7a7efa2 fab0843e15b025db953681f4f59e0d82 { 'aliquot_tag': 'ALQ_8be1abde', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02434.RNA-Seq.R2_L005.T C3N-02434 LSCC RNA-Seq tumor CPT0115830006 180925_UNC32-K00270_0122_BHWNF7BBXX_TTAGGC_S17_L005_R2_001.fastq.gz 4503446918 FASTQ R2_L005 unaligned CPTAC3 4f26ed28-b994-4b20-bc67-806e8a36a1ca b614556634ba515bf018728db2cefbb7 { 'aliquot_tag': 'ALQ_d3be393f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-02434.RNA-Seq.transcriptome.A.hg38 C3N-02434 LSCC RNA-Seq tissue_normal CPT0115860009 57fdf583-aa52-475c-b951-6652b9c1a957.rna_seq.transcriptome.gdc_realn.bam 9838849058 BAM transcriptome harmonized CPTAC3 13d35420-5c82-4b8b-a04b-04d1786f3b90 b05c049b230ff06963605f24dc743455 { 'aliquot_tag': 'ALQ_8be1abde', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02434.RNA-Seq.transcriptome.T.hg38 C3N-02434 LSCC RNA-Seq tumor CPT0115830006 48d294db-a4f2-47ce-8765-716750a3e580.rna_seq.transcriptome.gdc_realn.bam 12807130496 BAM transcriptome harmonized CPTAC3 f344b546-167e-4926-852f-76fa082f5037 51cfc33368c7afe256a23ba6c50c716e { 'aliquot_tag': 'ALQ_d3be393f', 'gdc_sample_type': 'Primary Tumor' } C3N-02434.WGS.A C3N-02434 LSCC WGS tissue_normal CPT0115860006 CPT0115860006.WholeGenome.RP-1303.bam 56442469056 BAM aligned CPTAC3 884db3a4-1c23-45cd-9296-abba5477c356 8e5a512c9bf1140914cfa9eab50fc6da { 'aliquot_tag': 'ALQ_1b5eb64f', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31307,12 +33437,12 @@ C3N-02435.miRNA-Seq.T C3N-02435 LSCC miRNA-Seq tumor CPT0241170009 190206_UNC31- C3N-02435.miRNA-Seq.T.hg38 C3N-02435 LSCC miRNA-Seq tumor CPT0241170009 d02b2b71-63c2-4fe5-a4b6-3d52de3a9c50_mirnaseq_gdc_realn.bam 168841124 BAM harmonized CPTAC3 3d416495-ceff-4c79-9266-79a62e270d3a 4ae0fa5e5d14f4c8be27d7bcf7e6008d { 'aliquot_tag': 'ALQ_14acc514', 'gdc_sample_type': 'Primary Tumor' } C3N-02435.RNA-Seq.chimeric.A.hg38 C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 3462e061-a698-4cd5-8935-c2871762adcd.rna_seq.chimeric.gdc_realn.bam 302038237 BAM chimeric harmonized CPTAC3 aa503442-8865-48ba-b7e9-0d03019e5b7d e6a77420051fc7f62bb6ecda53e26f6e { 'aliquot_tag': 'ALQ_1d78421a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02435.RNA-Seq.chimeric.T.hg38 C3N-02435 LSCC RNA-Seq tumor CPT0241170009 bf99e767-c3be-4f99-93f5-e96cfb66f2af.rna_seq.chimeric.gdc_realn.bam 296778463 BAM chimeric harmonized CPTAC3 0ed107db-fa7f-4ba7-be1c-9c820819fb81 ea8d0ac35894fff911922ffc563a7c16 { 'aliquot_tag': 'ALQ_14acc514', 'gdc_sample_type': 'Primary Tumor' } -C3N-02435.RNA-Seq.genomic.A.hg38 C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 3462e061-a698-4cd5-8935-c2871762adcd.rna_seq.genomic.gdc_realn.bam 9269548211 BAM genomic harmonized CPTAC3 306e9948-577f-495a-b82b-15886fc9293c 248c249e23d510b429e93477b0aa270d { 'aliquot_tag': 'ALQ_1d78421a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02435.RNA-Seq.genomic.T.hg38 C3N-02435 LSCC RNA-Seq tumor CPT0241170009 bf99e767-c3be-4f99-93f5-e96cfb66f2af.rna_seq.genomic.gdc_realn.bam 9375784424 BAM genomic harmonized CPTAC3 87ba6497-9b9e-4d18-8389-608601a6c77a 92db97c45307a1e25e38d37a9fbc6710 { 'aliquot_tag': 'ALQ_14acc514', 'gdc_sample_type': 'Primary Tumor' } -C3N-02435.RNA-Seq.R1_L003.T C3N-02435 LSCC RNA-Seq tumor CPT0241170009 190208_UNC32-K00270_0146_BH3V2WBBXY_CGTACG_S12_L003_R1_001.fastq.gz 4004442576 FASTQ R1_L003 unaligned CPTAC3 2ae41c77-a9e6-4e72-960c-79883d3f8a7a 5b3614b25db15b58e485aa94471a5961 { 'aliquot_tag': 'ALQ_14acc514', 'gdc_sample_type': 'Primary Tumor' } -C3N-02435.RNA-Seq.R1_L004.A C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 190208_UNC32-K00270_0146_BH3V2WBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3993610118 FASTQ R1_L004 unaligned CPTAC3 059287d2-82b3-416e-80f3-9b010e3a1ad9 10aa3cc299ab8b37d10535a769901e59 { 'aliquot_tag': 'ALQ_1d78421a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02435.RNA-Seq.R2_L003.T C3N-02435 LSCC RNA-Seq tumor CPT0241170009 190208_UNC32-K00270_0146_BH3V2WBBXY_CGTACG_S12_L003_R2_001.fastq.gz 4382828351 FASTQ R2_L003 unaligned CPTAC3 e1bc8ef8-d51f-4002-825a-29d546892fb6 ad8c8a496b599b819e553659a721cb01 { 'aliquot_tag': 'ALQ_14acc514', 'gdc_sample_type': 'Primary Tumor' } -C3N-02435.RNA-Seq.R2_L004.A C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 190208_UNC32-K00270_0146_BH3V2WBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 4446131135 FASTQ R2_L004 unaligned CPTAC3 62eb563b-67c2-4331-93da-f1b672fcc577 72721d3d85227577e73186f9f1406815 { 'aliquot_tag': 'ALQ_1d78421a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02435.RNA-Seq.genomic.A.hg38 C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 3462e061-a698-4cd5-8935-c2871762adcd.rna_seq.genomic.gdc_realn.bam 9269548211 BAM genomic harmonized CPTAC3 b8b2ea67-f831-4e36-bfbe-014adcfd8b5c 248c249e23d510b429e93477b0aa270d { 'aliquot_tag': 'ALQ_1d78421a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02435.RNA-Seq.genomic.T.hg38 C3N-02435 LSCC RNA-Seq tumor CPT0241170009 bf99e767-c3be-4f99-93f5-e96cfb66f2af.rna_seq.genomic.gdc_realn.bam 9375784424 BAM genomic harmonized CPTAC3 ce605d0c-e456-471e-8286-04a112a9b1cd 92db97c45307a1e25e38d37a9fbc6710 { 'aliquot_tag': 'ALQ_14acc514', 'gdc_sample_type': 'Primary Tumor' } +C3N-02435.RNA-Seq.R1_L003.T C3N-02435 LSCC RNA-Seq tumor CPT0241170009 190208_UNC32-K00270_0146_BH3V2WBBXY_CGTACG_S12_L003_R1_001.fastq.gz 4004442576 FASTQ R1_L003 unaligned CPTAC3 2ae41c77-a9e6-4e72-960c-79883d3f8a7a 5b3614b25db15b58e485aa94471a5961 { 'aliquot_tag': 'ALQ_14acc514', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02435.RNA-Seq.R1_L004.A C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 190208_UNC32-K00270_0146_BH3V2WBBXY_GAGTGG_S14_L004_R1_001.fastq.gz 3993610118 FASTQ R1_L004 unaligned CPTAC3 059287d2-82b3-416e-80f3-9b010e3a1ad9 10aa3cc299ab8b37d10535a769901e59 { 'aliquot_tag': 'ALQ_1d78421a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02435.RNA-Seq.R2_L003.T C3N-02435 LSCC RNA-Seq tumor CPT0241170009 190208_UNC32-K00270_0146_BH3V2WBBXY_CGTACG_S12_L003_R2_001.fastq.gz 4382828351 FASTQ R2_L003 unaligned CPTAC3 e1bc8ef8-d51f-4002-825a-29d546892fb6 ad8c8a496b599b819e553659a721cb01 { 'aliquot_tag': 'ALQ_14acc514', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02435.RNA-Seq.R2_L004.A C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 190208_UNC32-K00270_0146_BH3V2WBBXY_GAGTGG_S14_L004_R2_001.fastq.gz 4446131135 FASTQ R2_L004 unaligned CPTAC3 62eb563b-67c2-4331-93da-f1b672fcc577 72721d3d85227577e73186f9f1406815 { 'aliquot_tag': 'ALQ_1d78421a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3N-02435.RNA-Seq.transcriptome.A.hg38 C3N-02435 LSCC RNA-Seq tissue_normal CPT0241210009 3462e061-a698-4cd5-8935-c2871762adcd.rna_seq.transcriptome.gdc_realn.bam 8904478202 BAM transcriptome harmonized CPTAC3 31785b3a-0f70-4a68-a16c-9a052ef03d50 d812ab5f765e5c6966d54d25b96b09b5 { 'aliquot_tag': 'ALQ_1d78421a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02435.RNA-Seq.transcriptome.T.hg38 C3N-02435 LSCC RNA-Seq tumor CPT0241170009 bf99e767-c3be-4f99-93f5-e96cfb66f2af.rna_seq.transcriptome.gdc_realn.bam 8502010166 BAM transcriptome harmonized CPTAC3 b825a72a-b9d8-46ff-a002-93d2be1ba0b6 3b34101e567cd2f9e7cfb4157de80ce3 { 'aliquot_tag': 'ALQ_14acc514', 'gdc_sample_type': 'Primary Tumor' } C3N-02435.WGS.N C3N-02435 LSCC WGS blood_normal CPT0241820002 CPT0241820002.WholeGenome.RP-1303.bam 133068421000 BAM aligned CPTAC3 5cf68ed0-ccaf-4ba7-b534-62d2978fbba1 b9dde028089ba307c8b848774428acd5 { 'aliquot_tag': 'ALQ_6c91c224', 'gdc_sample_type': 'Blood Derived Normal' } @@ -31331,18 +33461,21 @@ C3N-02436.miRNA-Seq.A C3N-02436 UCEC miRNA-Seq tissue_normal CPT0115570006 19013 C3N-02436.miRNA-Seq.A.hg38 C3N-02436 UCEC miRNA-Seq tissue_normal CPT0115570006 7f73650f-20da-4a82-b1eb-f44b4b7375bf_mirnaseq_gdc_realn.bam 404129305 BAM harmonized CPTAC3 d41abdfb-30a9-431c-95e1-76f831208535 f2b1471195a54cb83455dfe3001d7712 { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02436.miRNA-Seq.T C3N-02436 UCEC miRNA-Seq tumor CPT0115530006 190108_UNC31-K00269_0176_AHYGLVBBXX_GTGAAA_S19_L002_R1_001.unaln.bam 159919242 BAM unaligned CPTAC3 1d3db87c-11c3-49a6-b119-e4ec35a1bb79 b38bfc87e541876f2eeaa934124b4814 { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor' } C3N-02436.miRNA-Seq.T.hg38 C3N-02436 UCEC miRNA-Seq tumor CPT0115530006 ba6f79b4-70d3-4c47-8e72-1310df42fc71_mirnaseq_gdc_realn.bam 174974061 BAM harmonized CPTAC3 a8f9cfcc-8719-4a9c-9fe0-e0b973497a67 930808f0679a518b494785e44cb5c6a4 { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02436.RNA-Seq.chimeric.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 d0cdf3c8-f15a-4b20-9d37-402e99c5b03a.rna_seq.chimeric.gdc_realn.bam 144646846 BAM chimeric harmonized CPTAC3 32a76c83-d123-4c66-a55a-7a09679eda7f 3c51a7589e2f120b59a50648a0407eba { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02436.RNA-Seq.chimeric.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 02fab25c-e9e8-4f31-89c4-7e0b1c1d9a14.rna_seq.chimeric.gdc_realn.bam 27388696 BAM chimeric harmonized CPTAC3 90a3362c-50b7-4350-8490-e3e19de1f458 30eaf4954d84be8fecbdc00e7ad1181a { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02436.RNA-Seq.genomic.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 d0cdf3c8-f15a-4b20-9d37-402e99c5b03a.rna_seq.genomic.gdc_realn.bam 9194790178 BAM genomic harmonized CPTAC3 2bfdfdd5-f405-4b59-a4ac-51670e0b39d3 584e412ea07d56cdab3906ae194a670b { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02436.RNA-Seq.genomic.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 02fab25c-e9e8-4f31-89c4-7e0b1c1d9a14.rna_seq.genomic.gdc_realn.bam 8898227505 BAM genomic harmonized CPTAC3 735127ab-fb2f-4b38-9aa3-189753ee0edd 640a3bcf91d1e3a36f9bdf1bf81ff31d { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02436.RNA-Seq.R1_L006.A C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 190125_UNC31-K00269_0184_AH3M32BBXY_CAGATC_S14_L006_R1_001.fastq.gz 4086354403 FASTQ R1_L006 unaligned CPTAC3 7b1e901e-65c0-4029-986e-a12d2087b8a9 4a3fe34ccec30993397ea0e6864d1a75 { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02436.RNA-Seq.R1_L006.T C3N-02436 UCEC RNA-Seq tumor CPT0115530006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 3913669967 FASTQ R1_L006 unaligned CPTAC3 98abadbd-a89b-4179-9fbd-4f881c729e34 af8be990f46ef49da25c07cf430e37fb { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02436.RNA-Seq.R1_.T C3N-02436 UCEC RNA-Seq tumor CPT0115580001 20210723_P2_D8_WB7988-plate2_S44_R1_001.fastq.gz 2568256890 FASTQ R1_ unaligned CPTAC3 d48c4ff4-b2bb-498d-b822-111bab49fc55 771102906a8c6f1e12e5b6c9f9e279da { 'aliquot_tag': 'ALQ_86948e53', 'gdc_sample_type': 'Primary Tumor' } -C3N-02436.RNA-Seq.R2_L006.A C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 190125_UNC31-K00269_0184_AH3M32BBXY_CAGATC_S14_L006_R2_001.fastq.gz 4343787238 FASTQ R2_L006 unaligned CPTAC3 86af161a-1571-472a-abf6-52fa762aa073 8c1147aeed65d79cfff955b2c9a34694 { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02436.RNA-Seq.R2_L006.T C3N-02436 UCEC RNA-Seq tumor CPT0115530006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4264446424 FASTQ R2_L006 unaligned CPTAC3 7e9715d5-2977-4cf1-ac8b-6e18ab2389a6 abc04db6c2366751e30bac28c1745161 { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor' } -C3N-02436.RNA-Seq.R2_.T C3N-02436 UCEC RNA-Seq tumor CPT0115580001 20210723_P2_D8_WB7988-plate2_S44_R2_001.fastq.gz 2844079303 FASTQ R2_ unaligned CPTAC3 55a032f3-1dea-41b8-93ab-c1e4515ebd4a e04acfd4377ec0aa5c906f49a33fd76c { 'aliquot_tag': 'ALQ_86948e53', 'gdc_sample_type': 'Primary Tumor' } -C3N-02436.RNA-Seq.transcriptome.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 d0cdf3c8-f15a-4b20-9d37-402e99c5b03a.rna_seq.transcriptome.gdc_realn.bam 9729098343 BAM transcriptome harmonized CPTAC3 8e7981b1-81a1-4cc7-89d4-e3844a52715c 349d0b7d21a892a99f109b08722b31a1 { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02436.RNA-Seq.transcriptome.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 02fab25c-e9e8-4f31-89c4-7e0b1c1d9a14.rna_seq.transcriptome.gdc_realn.bam 9034097629 BAM transcriptome harmonized CPTAC3 3418e89b-f924-422f-8df4-229306a09110 63912fc3c9705ea941219c063fd7a57c { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02436.RNA-Seq.chimeric.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 62878656-ff21-4a1d-b2b0-0b07d1408131.rna_seq.chimeric.gdc_realn.bam 144619189 BAM chimeric harmonized CPTAC3 cc1ac09b-5bab-49b4-b890-9a8bc837884d 587c0bbb9d9fb6466b9ce60377f2fcb6 { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02436.RNA-Seq.chimeric.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 75b78cb8-c038-41a1-b145-98ca5d8a99b0.rna_seq.chimeric.gdc_realn.bam 27379161 BAM chimeric harmonized CPTAC3 6a86ed40-20b7-4cfc-871c-68c2fbfde9a6 11988330c1a553015eb3de3d3b20b454 { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02436.RNA-Seq.chimeric.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115580001 22f6c2aa-b4fc-4f25-9202-e8d31e11ce26.rna_seq.chimeric.gdc_realn.bam 15813858 BAM chimeric harmonized CPTAC3 efa83d32-ec21-4b18-873f-2c7bfd073d9a fc43679059f5b049e4876a7c57637f77 { 'aliquot_tag': 'ALQ_86948e53', 'gdc_sample_type': 'Primary Tumor' } +C3N-02436.RNA-Seq.genomic.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 62878656-ff21-4a1d-b2b0-0b07d1408131.rna_seq.genomic.gdc_realn.bam 9195871656 BAM genomic harmonized CPTAC3 d5cdea35-6c75-408b-aae9-14a23ca6dddb b1f4a7c9d4913b8a09bc75915208cc42 { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02436.RNA-Seq.genomic.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 75b78cb8-c038-41a1-b145-98ca5d8a99b0.rna_seq.genomic.gdc_realn.bam 8899833740 BAM genomic harmonized CPTAC3 9d6e8b5e-9eec-42f7-9edc-035311c8f85f 90d70719e9ffa583c698a2c10942cee2 { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02436.RNA-Seq.genomic.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115580001 22f6c2aa-b4fc-4f25-9202-e8d31e11ce26.rna_seq.genomic.gdc_realn.bam 5124499507 BAM genomic harmonized CPTAC3 6557b425-07f4-4448-b5d0-b608e94bf3c6 5dedff6f010c937289dbe6fa95aef150 { 'aliquot_tag': 'ALQ_86948e53', 'gdc_sample_type': 'Primary Tumor' } +C3N-02436.RNA-Seq.R1_L006.A C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 190125_UNC31-K00269_0184_AH3M32BBXY_CAGATC_S14_L006_R1_001.fastq.gz 4086354403 FASTQ R1_L006 unaligned CPTAC3 7b1e901e-65c0-4029-986e-a12d2087b8a9 4a3fe34ccec30993397ea0e6864d1a75 { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02436.RNA-Seq.R1_L006.T C3N-02436 UCEC RNA-Seq tumor CPT0115530006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 3913669967 FASTQ R1_L006 unaligned CPTAC3 98abadbd-a89b-4179-9fbd-4f881c729e34 af8be990f46ef49da25c07cf430e37fb { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02436.RNA-Seq.R2_L006.A C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 190125_UNC31-K00269_0184_AH3M32BBXY_CAGATC_S14_L006_R2_001.fastq.gz 4343787238 FASTQ R2_L006 unaligned CPTAC3 86af161a-1571-472a-abf6-52fa762aa073 8c1147aeed65d79cfff955b2c9a34694 { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02436.RNA-Seq.R2_L006.T C3N-02436 UCEC RNA-Seq tumor CPT0115530006 181207_UNC32-K00270_0137_BH2LYCBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4264446424 FASTQ R2_L006 unaligned CPTAC3 7e9715d5-2977-4cf1-ac8b-6e18ab2389a6 abc04db6c2366751e30bac28c1745161 { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02436.RNA-Seq.T C3N-02436 UCEC RNA-Seq tumor CPT0115580001 20210723_P2_D8_WB7988-plate2_S44_R1_001.fastq.gz 2568256890 FASTQ unaligned CPTAC3 d48c4ff4-b2bb-498d-b822-111bab49fc55 771102906a8c6f1e12e5b6c9f9e279da +C3N-02436.RNA-Seq.T C3N-02436 UCEC RNA-Seq tumor CPT0115580001 20210723_P2_D8_WB7988-plate2_S44_R2_001.fastq.gz 2844079303 FASTQ unaligned CPTAC3 55a032f3-1dea-41b8-93ab-c1e4515ebd4a e04acfd4377ec0aa5c906f49a33fd76c +C3N-02436.RNA-Seq.transcriptome.A.hg38 C3N-02436 UCEC RNA-Seq tissue_normal CPT0115570006 62878656-ff21-4a1d-b2b0-0b07d1408131.rna_seq.transcriptome.gdc_realn.bam 11137195544 BAM transcriptome harmonized CPTAC3 df291048-b089-45b5-acfb-4d9aca42123c 3ce14de9ace98c35b6ffc8e4a8f845a2 { 'aliquot_tag': 'ALQ_9aa08c21', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02436.RNA-Seq.transcriptome.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115530006 75b78cb8-c038-41a1-b145-98ca5d8a99b0.rna_seq.transcriptome.gdc_realn.bam 10258279204 BAM transcriptome harmonized CPTAC3 475f4ae0-c951-4460-9f30-be3dd694e2b6 fbb89ffba7486590304564158eb7a3b5 { 'aliquot_tag': 'ALQ_6f202ae1', 'gdc_sample_type': 'Primary Tumor' } +C3N-02436.RNA-Seq.transcriptome.T.hg38 C3N-02436 UCEC RNA-Seq tumor CPT0115580001 22f6c2aa-b4fc-4f25-9202-e8d31e11ce26.rna_seq.transcriptome.gdc_realn.bam 4002843912 BAM transcriptome harmonized CPTAC3 a35fd3c4-103c-4912-86a6-e68d9c7b8a32 9183bc74305d9216a1e3221533011efc { 'aliquot_tag': 'ALQ_86948e53', 'gdc_sample_type': 'Primary Tumor' } C3N-02436.WGS.N C3N-02436 UCEC WGS blood_normal CPT0116420002 CPT0116420002.WholeGenome.RP-1303.bam 116369232209 BAM aligned CPTAC3 f762e07b-fe88-4716-b19f-d6e7eccdbbca add901edef0460b58267c390fbea14ef { 'aliquot_tag': 'ALQ_af990e70', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02436.WGS.N.hg38 C3N-02436 UCEC WGS blood_normal CPT0116420002 ff40e1c4-0a27-4520-98fb-a6785a90c2cf_wgs_gdc_realn.bam 166822187937 BAM harmonized CPTAC3 594f99b7-c9f2-421b-a08a-2e5f131d16ef 1ed6bd72b827c193e01ec260dbccd39b { 'aliquot_tag': 'ALQ_af990e70', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02436.WGS.T C3N-02436 UCEC WGS tumor CPT0115530009 CPT0115530009.WholeGenome.RP-1303.bam 103002774208 BAM aligned CPTAC3 d47fa50c-acd4-45fe-a531-d3e78fadfcfe a2ce089470527d6d17e7dd2342b53a9c { 'aliquot_tag': 'ALQ_ff9f3770', 'gdc_sample_type': 'Primary Tumor' } @@ -31357,13 +33490,16 @@ C3N-02437.MethArray.Green.T C3N-02437 UCEC Methylation Array tumor CPT0159110006 C3N-02437.MethArray.Red.T C3N-02437 UCEC Methylation Array tumor CPT0159110006 203561450030_R04C01_Red.idat 13676216 IDAT Red NA CPTAC3 33f3e4b0-6bed-44d4-b53f-9eec79316274 32fbe7811a21a0363f459a13c2ee7337 { 'aliquot_tag': 'ALQ_cd9b5f19', 'gdc_sample_type': 'Primary Tumor' } C3N-02437.miRNA-Seq.T C3N-02437 UCEC miRNA-Seq tumor CPT0159110009 190813_UNC32-K00270_0196_AH5MCWBBXY_TAGCTT_S39_L002_R1_001.unaln.bam 227191491 BAM unaligned CPTAC3 84e4aa80-6aee-40f6-9b82-7871ecf8ae6f 9dc6c0c1ad6982a2239ea082b56ffacf { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor' } C3N-02437.miRNA-Seq.T.hg38 C3N-02437 UCEC miRNA-Seq tumor CPT0159110009 5997a677-3d7e-4808-8cac-70ed7e1ab7da_mirnaseq_gdc_realn.bam 252701774 BAM harmonized CPTAC3 683a8997-23f0-421a-a685-f807625220bd ba605af2c79c6588cb2f544f605343ff { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor' } -C3N-02437.RNA-Seq.chimeric.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 a4bd5d30-872b-4921-9cc4-230030189f21.rna_seq.chimeric.gdc_realn.bam 36333054 BAM chimeric harmonized CPTAC3 5c63c563-d1c9-44db-b72a-4bd648206bf0 6ffe3a32f6fb54961776d39c041511e9 { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor' } -C3N-02437.RNA-Seq.genomic.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 a4bd5d30-872b-4921-9cc4-230030189f21.rna_seq.genomic.gdc_realn.bam 8667254585 BAM genomic harmonized CPTAC3 ab385c66-074f-49eb-b040-7724301830e8 2a5fb7e197654fe32d5bfdacb3aafe9d { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor' } -C3N-02437.RNA-Seq.R1_L001.T C3N-02437 UCEC RNA-Seq tumor CPT0159110009 190715_UNC31-K00269_0232_BH7H7CBBXY_GTTCCAAT-AATTCTGC_S4_L001_R1_001.fastq.gz 4294390025 FASTQ R1_L001 unaligned CPTAC3 a38f130e-be87-4a00-a7a7-03f323dadcad fdbc2249bf7c2b08276e05496afbf920 { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor' } -C3N-02437.RNA-Seq.R1_.T C3N-02437 UCEC RNA-Seq tumor CPT0159150001 20210729_P3_F2_WB7988-Plate3_S62_R1_001.fastq.gz 3264092318 FASTQ R1_ unaligned CPTAC3 cf132ccc-3ddf-411e-9677-318419393932 b7f1c7a52dc65c68d0590609c614c4ab { 'aliquot_tag': 'ALQ_a67f6c7a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02437.RNA-Seq.R2_L001.T C3N-02437 UCEC RNA-Seq tumor CPT0159110009 190715_UNC31-K00269_0232_BH7H7CBBXY_GTTCCAAT-AATTCTGC_S4_L001_R2_001.fastq.gz 4570939348 FASTQ R2_L001 unaligned CPTAC3 be404685-99b5-4648-aeb9-987f1ed14889 f690267d63775a5b63ba4aa9eebeb3d5 { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor' } -C3N-02437.RNA-Seq.R2_.T C3N-02437 UCEC RNA-Seq tumor CPT0159150001 20210729_P3_F2_WB7988-Plate3_S62_R2_001.fastq.gz 3374962760 FASTQ R2_ unaligned CPTAC3 5d413923-0466-4bf0-ad34-e51e6503ee33 60208a80c0102dec9dc7cdb023888933 { 'aliquot_tag': 'ALQ_a67f6c7a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02437.RNA-Seq.transcriptome.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 a4bd5d30-872b-4921-9cc4-230030189f21.rna_seq.transcriptome.gdc_realn.bam 9118675058 BAM transcriptome harmonized CPTAC3 06a8ac08-2d45-4399-a3ab-648249aed9f1 077c8ff0984158b72e03f1b06e0836db { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor' } +C3N-02437.RNA-Seq.chimeric.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 b1a2442e-c2ab-4023-8a38-ca4717d692a5.rna_seq.chimeric.gdc_realn.bam 36318079 BAM chimeric harmonized CPTAC3 4f0fb03b-3165-4ac3-99ca-cdf3aa656574 11012bfa810800b6a2afaa4b9d771899 { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor' } +C3N-02437.RNA-Seq.chimeric.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159150001 219b63a6-0092-4494-a233-c7b2429c3c51.rna_seq.chimeric.gdc_realn.bam 83538249 BAM chimeric harmonized CPTAC3 207415b4-fb43-40ae-b244-d888154ccc9a 16facd1f96bb303fafd8b277f24ff83a { 'aliquot_tag': 'ALQ_a67f6c7a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02437.RNA-Seq.genomic.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 b1a2442e-c2ab-4023-8a38-ca4717d692a5.rna_seq.genomic.gdc_realn.bam 8668660421 BAM genomic harmonized CPTAC3 f0b83b4a-792a-4298-a457-fa7232df1123 cd8031e335e32414981f592014b75654 { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor' } +C3N-02437.RNA-Seq.genomic.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159150001 219b63a6-0092-4494-a233-c7b2429c3c51.rna_seq.genomic.gdc_realn.bam 5133664645 BAM genomic harmonized CPTAC3 1525af9f-c923-45c0-8fda-cbe8cd623108 438f781c68b613da7f2a611edc00bdc3 { 'aliquot_tag': 'ALQ_a67f6c7a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02437.RNA-Seq.R1_L001.T C3N-02437 UCEC RNA-Seq tumor CPT0159110009 190715_UNC31-K00269_0232_BH7H7CBBXY_GTTCCAAT-AATTCTGC_S4_L001_R1_001.fastq.gz 4294390025 FASTQ R1_L001 unaligned CPTAC3 a38f130e-be87-4a00-a7a7-03f323dadcad fdbc2249bf7c2b08276e05496afbf920 { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02437.RNA-Seq.R2_L001.T C3N-02437 UCEC RNA-Seq tumor CPT0159110009 190715_UNC31-K00269_0232_BH7H7CBBXY_GTTCCAAT-AATTCTGC_S4_L001_R2_001.fastq.gz 4570939348 FASTQ R2_L001 unaligned CPTAC3 be404685-99b5-4648-aeb9-987f1ed14889 f690267d63775a5b63ba4aa9eebeb3d5 { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02437.RNA-Seq.T C3N-02437 UCEC RNA-Seq tumor CPT0159150001 20210729_P3_F2_WB7988-Plate3_S62_R1_001.fastq.gz 3264092318 FASTQ unaligned CPTAC3 cf132ccc-3ddf-411e-9677-318419393932 b7f1c7a52dc65c68d0590609c614c4ab +C3N-02437.RNA-Seq.T C3N-02437 UCEC RNA-Seq tumor CPT0159150001 20210729_P3_F2_WB7988-Plate3_S62_R2_001.fastq.gz 3374962760 FASTQ unaligned CPTAC3 5d413923-0466-4bf0-ad34-e51e6503ee33 60208a80c0102dec9dc7cdb023888933 +C3N-02437.RNA-Seq.transcriptome.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159110009 b1a2442e-c2ab-4023-8a38-ca4717d692a5.rna_seq.transcriptome.gdc_realn.bam 10464729833 BAM transcriptome harmonized CPTAC3 12e3f212-5773-4a93-bbb4-80918a0ec4e2 ee372c5230295a4beebb377b23ce95ad { 'aliquot_tag': 'ALQ_5d244288', 'gdc_sample_type': 'Primary Tumor' } +C3N-02437.RNA-Seq.transcriptome.T.hg38 C3N-02437 UCEC RNA-Seq tumor CPT0159150001 219b63a6-0092-4494-a233-c7b2429c3c51.rna_seq.transcriptome.gdc_realn.bam 2111740819 BAM transcriptome harmonized CPTAC3 157d2dda-c5cd-4748-bd82-68a3c21dce1e 4acc58f1fbddb25f46f647cc2f2c2708 { 'aliquot_tag': 'ALQ_a67f6c7a', 'gdc_sample_type': 'Primary Tumor' } C3N-02437.WGS.N C3N-02437 UCEC WGS blood_normal CPT0159380002 CPT0159380002.WholeGenome.RP-1303.bam 67000945760 BAM aligned CPTAC3 1df3b945-136c-4c56-9dbf-c91c5e756d71 cac294e2ca19b9d83695762b06f111ee { 'aliquot_tag': 'ALQ_8a2e587a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02437.WGS.N.hg38 C3N-02437 UCEC WGS blood_normal CPT0159380002 1f6a7fcf-9360-4258-90e2-daddece83775_wgs_gdc_realn.bam 97354995064 BAM harmonized CPTAC3 06466397-79c9-4f12-8b65-3371db9d467d 30da521dff0600f73f3585d4429edaf1 { 'aliquot_tag': 'ALQ_8a2e587a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02437.WGS.T C3N-02437 UCEC WGS tumor CPT0159110006 CPT0159110006.WholeGenome.RP-1303.bam 74315837136 BAM aligned CPTAC3 6d1ab595-a870-4df4-9a0d-90c43c5b7a16 869bd5b697fd02dfc10307a5c5facf7b { 'aliquot_tag': 'ALQ_cd9b5f19', 'gdc_sample_type': 'Primary Tumor' } @@ -31380,16 +33516,16 @@ C3N-02439.miRNA-Seq.A C3N-02439 CCRCC miRNA-Seq tissue_normal CPT0158690009 1901 C3N-02439.miRNA-Seq.A.hg38 C3N-02439 CCRCC miRNA-Seq tissue_normal CPT0158690009 1329c35a-325a-43e9-8817-b401f79c6aba_mirnaseq_gdc_realn.bam 192847986 BAM harmonized CPTAC3 7989798c-deac-41d2-ae9a-9dce3bb624f5 9e582243ea85710005e0135d98f6a8f5 { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02439.miRNA-Seq.T C3N-02439 CCRCC miRNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0176_AHYGLVBBXX_GACGAC_S41_L005_R1_001.unaln.bam 209572539 BAM unaligned CPTAC3 996a807e-c2bb-4119-81d8-7d854343988d 3c28a4aec331a95b21b80088571f747f { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor' } C3N-02439.miRNA-Seq.T.hg38 C3N-02439 CCRCC miRNA-Seq tumor CPT0158660006 f10d622b-2e99-4231-a592-f2f8f13640e5_mirnaseq_gdc_realn.bam 230671961 BAM harmonized CPTAC3 57205c90-1352-44f4-9c59-f8ebc3719b38 c7c828fc63c02d6c8ea6c7ad083088e1 { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor' } -C3N-02439.RNA-Seq.chimeric.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 60eec7f1-cf22-4b0d-ba1f-43bad93b28f9.rna_seq.chimeric.gdc_realn.bam 58645721 BAM chimeric harmonized CPTAC3 3b580053-1d5d-4957-8953-4979b835594e d2207bdfd7b8713c35c28d57923cc55b { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02439.RNA-Seq.chimeric.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 8358bcdc-c239-4c05-b03e-2472aafc3264.rna_seq.chimeric.gdc_realn.bam 62863474 BAM chimeric harmonized CPTAC3 13d721d4-fdbe-4ae2-a2d5-bcdf63cf4192 3d0ed4cc1a4d6ccdc35d69184d736a63 { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor' } -C3N-02439.RNA-Seq.genomic.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 60eec7f1-cf22-4b0d-ba1f-43bad93b28f9.rna_seq.genomic.gdc_realn.bam 8313725450 BAM genomic harmonized CPTAC3 a7919daf-101f-4b35-a202-c54743b01e33 e7435a52edb8b00d1e1af6a73a4cbd2c { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02439.RNA-Seq.genomic.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 8358bcdc-c239-4c05-b03e-2472aafc3264.rna_seq.genomic.gdc_realn.bam 8811905427 BAM genomic harmonized CPTAC3 cb18d61b-e2e4-4583-a271-17eb1adc258a e41a42ba29ff74b37c5fb6c247753f93 { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor' } -C3N-02439.RNA-Seq.R1_L006.T C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L006_R1_001.fastq.gz 4159334660 FASTQ R1_L006 unaligned CPTAC3 b97e543a-4798-40cb-9eba-9fb31606ba14 55e803e556ce1b099dc50783e3c3cde4 { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor' } -C3N-02439.RNA-Seq.R1_L007.A C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 190117_UNC31-K00269_0180_AH35VKBBXY_GTGAAA_S18_L007_R1_001.fastq.gz 3424139828 FASTQ R1_L007 unaligned CPTAC3 a4d1b56c-a881-4b63-85d6-f09a496fe9d0 2b06944878755ba7a450d52d1598d4f8 { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02439.RNA-Seq.R2_L006.T C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L006_R2_001.fastq.gz 4327501541 FASTQ R2_L006 unaligned CPTAC3 768908dd-e3a0-41a4-b8ab-299b79a254af a95ea1888209ca2458e5b824776593dc { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor' } -C3N-02439.RNA-Seq.R2_L007.A C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 190117_UNC31-K00269_0180_AH35VKBBXY_GTGAAA_S18_L007_R2_001.fastq.gz 3597530871 FASTQ R2_L007 unaligned CPTAC3 51c2c085-8016-4881-a8a1-4cdb23625895 279310e5f666157f9b6660972d2cd19d { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02439.RNA-Seq.transcriptome.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 60eec7f1-cf22-4b0d-ba1f-43bad93b28f9.rna_seq.transcriptome.gdc_realn.bam 7057886684 BAM transcriptome harmonized CPTAC3 b90fa7b9-3b11-4dfe-85a9-252bc062854f 3f95d3d4a5ed97dae6c941e1037da62d { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02439.RNA-Seq.transcriptome.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 8358bcdc-c239-4c05-b03e-2472aafc3264.rna_seq.transcriptome.gdc_realn.bam 9500070308 BAM transcriptome harmonized CPTAC3 c1346b97-c6a4-4140-9c12-287e1686b89b 672025a49fa414675f48fcfc980e1143 { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor' } +C3N-02439.RNA-Seq.chimeric.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 afbbd1f7-b4c5-4514-899e-45ac45cc6d15.rna_seq.chimeric.gdc_realn.bam 58625985 BAM chimeric harmonized CPTAC3 6d053d0b-4acf-42ad-a821-1c50fa04b48a 93b3595e9895c14bfe74a7be6fa5492e { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02439.RNA-Seq.chimeric.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 2ef309e6-05d9-449d-b214-cf383dc7930c.rna_seq.chimeric.gdc_realn.bam 62862523 BAM chimeric harmonized CPTAC3 7c8943f5-2db6-40d7-8f52-beb2b9fa10d6 8e75d2da917c7c3551bba796678b2d93 { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor' } +C3N-02439.RNA-Seq.genomic.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 afbbd1f7-b4c5-4514-899e-45ac45cc6d15.rna_seq.genomic.gdc_realn.bam 8314618545 BAM genomic harmonized CPTAC3 9326fe61-f88a-448f-9901-39ac823292bb 8e1607d2878a6484f97f8bb439a0b4d7 { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02439.RNA-Seq.genomic.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 2ef309e6-05d9-449d-b214-cf383dc7930c.rna_seq.genomic.gdc_realn.bam 8813156660 BAM genomic harmonized CPTAC3 6a595bdf-0dc3-4a76-a1ac-22b019891ec5 122dd0d315a138d19c85e53cbef22ea6 { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor' } +C3N-02439.RNA-Seq.R1_L006.T C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L006_R1_001.fastq.gz 4159334660 FASTQ R1_L006 unaligned CPTAC3 b97e543a-4798-40cb-9eba-9fb31606ba14 55e803e556ce1b099dc50783e3c3cde4 { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02439.RNA-Seq.R1_L007.A C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 190117_UNC31-K00269_0180_AH35VKBBXY_GTGAAA_S18_L007_R1_001.fastq.gz 3424139828 FASTQ R1_L007 unaligned CPTAC3 a4d1b56c-a881-4b63-85d6-f09a496fe9d0 2b06944878755ba7a450d52d1598d4f8 { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02439.RNA-Seq.R2_L006.T C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 190108_UNC31-K00269_0177_BH32KTBBXY_GTCCGC_S23_L006_R2_001.fastq.gz 4327501541 FASTQ R2_L006 unaligned CPTAC3 768908dd-e3a0-41a4-b8ab-299b79a254af a95ea1888209ca2458e5b824776593dc { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02439.RNA-Seq.R2_L007.A C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 190117_UNC31-K00269_0180_AH35VKBBXY_GTGAAA_S18_L007_R2_001.fastq.gz 3597530871 FASTQ R2_L007 unaligned CPTAC3 51c2c085-8016-4881-a8a1-4cdb23625895 279310e5f666157f9b6660972d2cd19d { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02439.RNA-Seq.transcriptome.A.hg38 C3N-02439 CCRCC RNA-Seq tissue_normal CPT0158690009 afbbd1f7-b4c5-4514-899e-45ac45cc6d15.rna_seq.transcriptome.gdc_realn.bam 8021047492 BAM transcriptome harmonized CPTAC3 fdda16cc-8024-4b6d-bdbf-feb2862e6f6e 3ccf42e903a89110f30a2c526461dc06 { 'aliquot_tag': 'ALQ_d6263245', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02439.RNA-Seq.transcriptome.T.hg38 C3N-02439 CCRCC RNA-Seq tumor CPT0158660006 2ef309e6-05d9-449d-b214-cf383dc7930c.rna_seq.transcriptome.gdc_realn.bam 10770900272 BAM transcriptome harmonized CPTAC3 4b2d37d4-665a-4b75-bea8-2f03a56be719 cf53e88a7b8f4ac688dce741906baee2 { 'aliquot_tag': 'ALQ_c4c9b805', 'gdc_sample_type': 'Primary Tumor' } C3N-02439.WGS.N C3N-02439 CCRCC WGS blood_normal CPT0159410002 CPT0159410002.WholeGenome.RP-1303.bam 89426794434 BAM aligned CPTAC3 94e23d33-c558-4d1a-9ec9-19a3f2e60ed9 c7aeb0eb18c6d7ce4164dc241b6ee34a { 'aliquot_tag': 'ALQ_9a3b0ab3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02439.WGS.N.hg38 C3N-02439 CCRCC WGS blood_normal CPT0159410002 849f9c8e-68f7-4be8-95ee-b70828ffa713_wgs_gdc_realn.bam 130294297028 BAM harmonized CPTAC3 d10fd5bf-edb1-45ef-b18c-d4fd21fbb373 676640c7d5989b593c68b2fd9f994807 { 'aliquot_tag': 'ALQ_9a3b0ab3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02439.WGS.T C3N-02439 CCRCC WGS tumor CPT0158660009 CPT0158660009.WholeGenome.RP-1303.bam 101708607952 BAM aligned CPTAC3 09516bc6-155a-4054-b973-0f45334fa533 5b74b40c63221966a90fe8e0bdb421a9 { 'aliquot_tag': 'ALQ_5476a594', 'gdc_sample_type': 'Primary Tumor' } @@ -31408,16 +33544,16 @@ C3N-02440.miRNA-Seq.A C3N-02440 CCRCC miRNA-Seq tissue_normal CPT0384450006 2101 C3N-02440.miRNA-Seq.A.hg38 C3N-02440 CCRCC miRNA-Seq tissue_normal CPT0384450006 5cce5a45-4a8f-471b-b5d9-a9cf6066c7b4_mirnaseq_gdc_realn.bam 274069205 BAM harmonized CPTAC3 7d790060-8336-4131-83cf-b9ea71e9f02c 7969c36f10f448cf18902c0f553c0ba1 { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02440.miRNA-Seq.T C3N-02440 CCRCC miRNA-Seq tumor CPT0384430006 210111_UNC32-K00270_0270_AHJ5LKBBXY_CCGTCC_S9_L001_R1_001.unaln.bam 221068064 BAM unaligned CPTAC3 8435d16f-7017-4c00-91fa-f47f068729e0 6c2fda5972845582a3e8ae4afbcdbb75 { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor' } C3N-02440.miRNA-Seq.T.hg38 C3N-02440 CCRCC miRNA-Seq tumor CPT0384430006 f3600bfc-6584-4b88-a730-dbbde7a398d5_mirnaseq_gdc_realn.bam 236067606 BAM harmonized CPTAC3 d89e7ee7-fffe-4205-a3ce-fe41093bff94 76f405575c8cc1190740a0fd623f3d8a { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02440.RNA-Seq.chimeric.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 c52267d9-6b02-4a97-87be-5e6c8e3b82c7.rna_seq.chimeric.gdc_realn.bam 233474964 BAM chimeric harmonized CPTAC3 a7d9fedc-b612-4c89-b5b4-21aabc5ed8af 7290a1ae0e1fea37e1428eb9ea4566ea { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02440.RNA-Seq.chimeric.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 35d37c58-e6b6-44fb-91f9-90ec7392f933.rna_seq.chimeric.gdc_realn.bam 277224352 BAM chimeric harmonized CPTAC3 7d3c2552-f501-47b4-ac10-b6cd60c2a432 f300a4f9971d6db2dbbb2aec324219d5 { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02440.RNA-Seq.genomic.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 c52267d9-6b02-4a97-87be-5e6c8e3b82c7.rna_seq.genomic.gdc_realn.bam 7689845090 BAM genomic harmonized CPTAC3 540b205f-ca73-4cfc-abd0-2f79a0154fa7 c768a0f40276af49c755fa4ea8b3a887 { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02440.RNA-Seq.genomic.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 35d37c58-e6b6-44fb-91f9-90ec7392f933.rna_seq.genomic.gdc_realn.bam 7512283029 BAM genomic harmonized CPTAC3 1f3fbddc-a3ab-4da2-82ed-4b8b8d63e101 9f1bbd134f1a02ccfb59ec361a0d1d58 { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02440.RNA-Seq.R1_L005.A C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 210105_UNC32-K00270_0269_BHKN5MBBXY_TAATACAG-ATATTCAC_S20_L005_R1_001.fastq.gz 3600454699 FASTQ R1_L005 unaligned CPTAC3 c2dd4f3c-2485-4261-ab43-204060ae3cae a103e5f3d96a257e92d6638a0df9fee6 { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02440.RNA-Seq.R1_L006.T C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATCCGGA-CTACAGTT_S21_L006_R1_001.fastq.gz 3512128406 FASTQ R1_L006 unaligned CPTAC3 5b06be3c-4cc7-4db2-a5f3-d3edec4342a9 e66ebd3cb2c193e13c4cd40f8f0e4351 { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02440.RNA-Seq.R2_L005.A C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 210105_UNC32-K00270_0269_BHKN5MBBXY_TAATACAG-ATATTCAC_S20_L005_R2_001.fastq.gz 4024417229 FASTQ R2_L005 unaligned CPTAC3 26c6d14a-5527-4d67-8db0-99ad8b185bb2 8576ca8a40d5c4dc1ba195d4c2b2c44d { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02440.RNA-Seq.R2_L006.T C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATCCGGA-CTACAGTT_S21_L006_R2_001.fastq.gz 3963528862 FASTQ R2_L006 unaligned CPTAC3 76acf7f1-0f9b-44fd-aa16-d5fe1d950e88 3163f1ab77f9e16ebc72787df5f2614e { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02440.RNA-Seq.transcriptome.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 c52267d9-6b02-4a97-87be-5e6c8e3b82c7.rna_seq.transcriptome.gdc_realn.bam 7886253975 BAM transcriptome harmonized CPTAC3 51e75aab-7d10-46d8-b54e-478da8ded269 1320adb524cdf86a9f19559318369f36 { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02440.RNA-Seq.transcriptome.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 35d37c58-e6b6-44fb-91f9-90ec7392f933.rna_seq.transcriptome.gdc_realn.bam 7120066433 BAM transcriptome harmonized CPTAC3 0a1df937-b85f-48ab-a95f-49faa26bc4bb a17fbd12e0101cf8a059a3d952200c36 { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02440.RNA-Seq.chimeric.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 7a8785b8-897d-4c0d-817f-bfb7da1f940a.rna_seq.chimeric.gdc_realn.bam 233467565 BAM chimeric harmonized CPTAC3 bac222af-580c-4cd4-b114-3ebea02c3602 9241c8fb0abc39878e0c99944f241e67 { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02440.RNA-Seq.chimeric.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 ac27a081-916d-42b2-a00f-7b40c85ae9f3.rna_seq.chimeric.gdc_realn.bam 277230342 BAM chimeric harmonized CPTAC3 947f5515-788a-42b3-a201-f56c2eefa45b 5d8e403ff9239cdb982b5bb896705ad8 { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02440.RNA-Seq.genomic.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 7a8785b8-897d-4c0d-817f-bfb7da1f940a.rna_seq.genomic.gdc_realn.bam 7695730481 BAM genomic harmonized CPTAC3 41dbdd23-822e-4766-b0cd-29eba0bec105 59d01c2ac4f59611ce91642dddfc4d27 { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02440.RNA-Seq.genomic.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 ac27a081-916d-42b2-a00f-7b40c85ae9f3.rna_seq.genomic.gdc_realn.bam 7517816932 BAM genomic harmonized CPTAC3 d6e91e66-b4fd-4fdd-a543-c624f76855cc d223d56797f953442887329bf49cab0b { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02440.RNA-Seq.R1_L005.A C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 210105_UNC32-K00270_0269_BHKN5MBBXY_TAATACAG-ATATTCAC_S20_L005_R1_001.fastq.gz 3600454699 FASTQ R1_L005 unaligned CPTAC3 c2dd4f3c-2485-4261-ab43-204060ae3cae a103e5f3d96a257e92d6638a0df9fee6 { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02440.RNA-Seq.R1_L006.T C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATCCGGA-CTACAGTT_S21_L006_R1_001.fastq.gz 3512128406 FASTQ R1_L006 unaligned CPTAC3 5b06be3c-4cc7-4db2-a5f3-d3edec4342a9 e66ebd3cb2c193e13c4cd40f8f0e4351 { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02440.RNA-Seq.R2_L005.A C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 210105_UNC32-K00270_0269_BHKN5MBBXY_TAATACAG-ATATTCAC_S20_L005_R2_001.fastq.gz 4024417229 FASTQ R2_L005 unaligned CPTAC3 26c6d14a-5527-4d67-8db0-99ad8b185bb2 8576ca8a40d5c4dc1ba195d4c2b2c44d { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02440.RNA-Seq.R2_L006.T C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 210105_UNC32-K00270_0269_BHKN5MBBXY_AATCCGGA-CTACAGTT_S21_L006_R2_001.fastq.gz 3963528862 FASTQ R2_L006 unaligned CPTAC3 76acf7f1-0f9b-44fd-aa16-d5fe1d950e88 3163f1ab77f9e16ebc72787df5f2614e { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02440.RNA-Seq.transcriptome.A.hg38 C3N-02440 CCRCC RNA-Seq tissue_normal CPT0384450006 7a8785b8-897d-4c0d-817f-bfb7da1f940a.rna_seq.transcriptome.gdc_realn.bam 9065523905 BAM transcriptome harmonized CPTAC3 c09a923f-0cf9-4455-aa4b-d932cb3ee0ee f29f8cefc5729cee7df422ad6547543d { 'aliquot_tag': 'ALQ_bcf234fd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02440.RNA-Seq.transcriptome.T.hg38 C3N-02440 CCRCC RNA-Seq tumor CPT0384430006 ac27a081-916d-42b2-a00f-7b40c85ae9f3.rna_seq.transcriptome.gdc_realn.bam 8088195156 BAM transcriptome harmonized CPTAC3 b10ff494-9003-43b9-b6e9-6afdb0e9a7a0 051f734ff4f16d7b2d79a20018e6ca3c { 'aliquot_tag': 'ALQ_33b2c15d', 'gdc_sample_type': 'Primary Tumor' } C3N-02440.WGS.N C3N-02440 CCRCC WGS blood_normal CPT0385420002 CPT0385420002.WholeGenome.RP-2158.bam 28558429313 BAM aligned CPTAC3 027650de-1b5e-4b01-a665-579116df779f f7c0996f99855e642ff948e65c0fc461 { 'aliquot_tag': 'ALQ_afc82740', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02440.WGS.N.hg38 C3N-02440 CCRCC WGS blood_normal CPT0385420002 b3cc5d3f-c66e-48ff-9bfc-b2b4cebe13d4_wgs_gdc_realn.bam 86299120355 BAM harmonized CPTAC3 af990cca-8c0a-4590-a3b7-b17838ecf11f a948eda8080549b45d5e929b31d85692 { 'aliquot_tag': 'ALQ_afc82740', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02440.WGS.T C3N-02440 CCRCC WGS tumor CPT0384430009 CPT0384430009.WholeGenome.RP-2158.bam 28561772726 BAM aligned CPTAC3 3cb67dad-0f73-4413-8a6d-f08b18d80ebf e982dc536bf997a0530c50a44aec9fa8 { 'aliquot_tag': 'ALQ_a30ddccc', 'gdc_sample_type': 'Primary Tumor' } @@ -31436,16 +33572,16 @@ C3N-02451.miRNA-Seq.A C3N-02451 LUAD miRNA-Seq tissue_normal CPT0241050009 19071 C3N-02451.miRNA-Seq.A.hg38 C3N-02451 LUAD miRNA-Seq tissue_normal CPT0241050009 ba633d92-25e7-40bb-8558-6f94d2d7e979_mirnaseq_gdc_realn.bam 212929593 BAM harmonized CPTAC3 dd1c528e-4ca3-4806-b73f-945ad43270bc 0e0817e7cf0689384c9a749591f629da { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02451.miRNA-Seq.T C3N-02451 LUAD miRNA-Seq tumor CPT0241040009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCGGCA_S40_L004_R1_001.unaln.bam 279215550 BAM unaligned CPTAC3 c71b9bc3-cfea-41b9-8c08-d29a6e46ceb0 04622d02eb182bb6295b019d05b1ad09 { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor' } C3N-02451.miRNA-Seq.T.hg38 C3N-02451 LUAD miRNA-Seq tumor CPT0241040009 1d7422fb-654c-4d2c-80e6-0dbb0347175e_mirnaseq_gdc_realn.bam 305344203 BAM harmonized CPTAC3 f3bb8051-c365-4568-9f8d-6405ee12bbda 42f141feab5f8b64976cfb5828a645b7 { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor' } -C3N-02451.RNA-Seq.chimeric.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 1e622a4a-50e4-427b-8411-ded1de3d2555.rna_seq.chimeric.gdc_realn.bam 83522310 BAM chimeric harmonized CPTAC3 0a136119-7b5e-4f0b-bc2b-e1c0573f2abc ea30b4df420d59835e33f9efc51ba417 { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02451.RNA-Seq.chimeric.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 bf1ef3f6-9391-45f8-b487-09398ff274ec.rna_seq.chimeric.gdc_realn.bam 24325778 BAM chimeric harmonized CPTAC3 2bee07ec-51bb-4d72-9c44-377152f33ac3 17e95475fd0f851983b09754fda82da4 { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor' } -C3N-02451.RNA-Seq.genomic.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 1e622a4a-50e4-427b-8411-ded1de3d2555.rna_seq.genomic.gdc_realn.bam 6848043220 BAM genomic harmonized CPTAC3 2ee9925d-eb01-464e-8e64-6ca266381e58 21b43a24f3bb34576602caef95e43078 { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02451.RNA-Seq.genomic.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 bf1ef3f6-9391-45f8-b487-09398ff274ec.rna_seq.genomic.gdc_realn.bam 9633381126 BAM genomic harmonized CPTAC3 f6651fde-32e9-4a34-be7b-0b31e1544567 cf1a59fce000b239da5f74955175314b { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor' } -C3N-02451.RNA-Seq.R1_L004.A C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 190717_UNC31-K00269_0233_BH7HG5BBXY_AACGTTCC-GGAGTACT_S15_L004_R1_001.fastq.gz 3239708041 FASTQ R1_L004 unaligned CPTAC3 178e0d8c-862a-4248-a57c-da48fbcb46c4 6ba626ba5d6409395d3435a5a10a56ff { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02451.RNA-Seq.R1_L008.T C3N-02451 LUAD RNA-Seq tumor CPT0241040009 190607_UNC32-K00270_0179_BH75W2BBXY_ACCTTGGC-GGCCTCAT_S30_L008_R1_001.fastq.gz 3423060283 FASTQ R1_L008 unaligned CPTAC3 3db15939-ea0a-4c22-88ad-c01dabe9cecb 2e4eb6d4e495337d5993e50162c124d4 { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor' } -C3N-02451.RNA-Seq.R2_L004.A C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 190717_UNC31-K00269_0233_BH7HG5BBXY_AACGTTCC-GGAGTACT_S15_L004_R2_001.fastq.gz 3354683837 FASTQ R2_L004 unaligned CPTAC3 487f8e80-d4fe-4b41-b2f8-0a090c0a9fe2 4822dfeba9332c518aca9ad2c6f91b6c { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02451.RNA-Seq.R2_L008.T C3N-02451 LUAD RNA-Seq tumor CPT0241040009 190607_UNC32-K00270_0179_BH75W2BBXY_ACCTTGGC-GGCCTCAT_S30_L008_R2_001.fastq.gz 3908469233 FASTQ R2_L008 unaligned CPTAC3 6a993f42-db9c-436d-9053-c3ff66120ce1 d850ba1f83eda825ac495a8a51aa53fd { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor' } -C3N-02451.RNA-Seq.transcriptome.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 1e622a4a-50e4-427b-8411-ded1de3d2555.rna_seq.transcriptome.gdc_realn.bam 6224120321 BAM transcriptome harmonized CPTAC3 fb90887e-060c-4e62-aa68-453f6b7e19d4 c4ca27c009930739648a9a167d72165d { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02451.RNA-Seq.transcriptome.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 bf1ef3f6-9391-45f8-b487-09398ff274ec.rna_seq.transcriptome.gdc_realn.bam 6666491519 BAM transcriptome harmonized CPTAC3 a5814cda-0584-4cde-80b7-f9ce0b1e31ec 30b97762c22127e6b624be9ccac6c9fc { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor' } +C3N-02451.RNA-Seq.chimeric.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 3a78e999-4a79-4320-8e87-81dfa104be0c.rna_seq.chimeric.gdc_realn.bam 83507774 BAM chimeric harmonized CPTAC3 7fd70443-d2ee-46ef-beaa-7a23c1156436 4244fe42ef08822cde12cea8416292ab { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02451.RNA-Seq.chimeric.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 6bd7dba2-4167-4e4a-9a1b-966ec4753c32.rna_seq.chimeric.gdc_realn.bam 24317778 BAM chimeric harmonized CPTAC3 17410d7d-a705-4ba2-8af1-da0bad507e1c 16617cc9fb4b092457f14099dcb8b8e0 { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor' } +C3N-02451.RNA-Seq.genomic.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 3a78e999-4a79-4320-8e87-81dfa104be0c.rna_seq.genomic.gdc_realn.bam 6848585463 BAM genomic harmonized CPTAC3 6c08c64b-056f-48c2-82d2-542b91b0c95e a2b0f3a2d97a7173c24813750a844e33 { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02451.RNA-Seq.genomic.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 6bd7dba2-4167-4e4a-9a1b-966ec4753c32.rna_seq.genomic.gdc_realn.bam 9634489533 BAM genomic harmonized CPTAC3 65bf549c-c811-4e12-9f49-c7685a76bc56 440ef6e5a360971f3fc70af83a236651 { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor' } +C3N-02451.RNA-Seq.R1_L004.A C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 190717_UNC31-K00269_0233_BH7HG5BBXY_AACGTTCC-GGAGTACT_S15_L004_R1_001.fastq.gz 3239708041 FASTQ R1_L004 unaligned CPTAC3 178e0d8c-862a-4248-a57c-da48fbcb46c4 6ba626ba5d6409395d3435a5a10a56ff { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02451.RNA-Seq.R1_L008.T C3N-02451 LUAD RNA-Seq tumor CPT0241040009 190607_UNC32-K00270_0179_BH75W2BBXY_ACCTTGGC-GGCCTCAT_S30_L008_R1_001.fastq.gz 3423060283 FASTQ R1_L008 unaligned CPTAC3 3db15939-ea0a-4c22-88ad-c01dabe9cecb 2e4eb6d4e495337d5993e50162c124d4 { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02451.RNA-Seq.R2_L004.A C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 190717_UNC31-K00269_0233_BH7HG5BBXY_AACGTTCC-GGAGTACT_S15_L004_R2_001.fastq.gz 3354683837 FASTQ R2_L004 unaligned CPTAC3 487f8e80-d4fe-4b41-b2f8-0a090c0a9fe2 4822dfeba9332c518aca9ad2c6f91b6c { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02451.RNA-Seq.R2_L008.T C3N-02451 LUAD RNA-Seq tumor CPT0241040009 190607_UNC32-K00270_0179_BH75W2BBXY_ACCTTGGC-GGCCTCAT_S30_L008_R2_001.fastq.gz 3908469233 FASTQ R2_L008 unaligned CPTAC3 6a993f42-db9c-436d-9053-c3ff66120ce1 d850ba1f83eda825ac495a8a51aa53fd { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02451.RNA-Seq.transcriptome.A.hg38 C3N-02451 LUAD RNA-Seq tissue_normal CPT0241050009 3a78e999-4a79-4320-8e87-81dfa104be0c.rna_seq.transcriptome.gdc_realn.bam 7087197314 BAM transcriptome harmonized CPTAC3 7eddfec1-40ee-45fa-a7fe-8ef35de97b6f ee0d6bf55d20e77f2ad59a1929e647af { 'aliquot_tag': 'ALQ_a53045d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02451.RNA-Seq.transcriptome.T.hg38 C3N-02451 LUAD RNA-Seq tumor CPT0241040009 6bd7dba2-4167-4e4a-9a1b-966ec4753c32.rna_seq.transcriptome.gdc_realn.bam 7575433567 BAM transcriptome harmonized CPTAC3 f2054ef9-5add-48c7-bfcd-43aae30ad1a3 51c92f389a3fb74b164fd6dab0348873 { 'aliquot_tag': 'ALQ_98506c61', 'gdc_sample_type': 'Primary Tumor' } C3N-02451.WGS.N C3N-02451 LUAD WGS blood_normal CPT0241800002 CPT0241800002.WholeGenome.RP-1303.bam 55742329145 BAM aligned CPTAC3 5a5d2802-ff22-4e73-9a24-8cba3d487430 5a9d9ec405e5b3de9686b350dbaea2d8 { 'aliquot_tag': 'ALQ_16519144', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02451.WGS.N.hg38 C3N-02451 LUAD WGS blood_normal CPT0241800002 63ece0bb-876d-4c0f-9251-1a39216e701e_wgs_gdc_realn.bam 82066438981 BAM harmonized CPTAC3 6c6ba47f-e277-43f5-bb03-4f963e20d946 d0216d22d3524cf27142c841ee8f870f { 'aliquot_tag': 'ALQ_16519144', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02451.WGS.T C3N-02451 LUAD WGS tumor CPT0241040006 CPT0241040006.WholeGenome.RP-1303.bam 56489622276 BAM aligned CPTAC3 c2d0eb4d-a94e-4c3c-bbaf-3ae9b0cc90aa 224f03b8a7b1a1ec75ed18f99774467f { 'aliquot_tag': 'ALQ_8ef71f0', 'gdc_sample_type': 'Primary Tumor' } @@ -31467,11 +33603,11 @@ C3N-02494.miRNA-Seq.T.hg38 C3N-02494 LSCC miRNA-Seq tumor CPT0234790009 9e78336a C3N-02494.RNA-Seq.chimeric.A.hg38 C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 8c279cd6-6bfa-4f39-ac40-d631db50420c.rna_seq.chimeric.gdc_realn.bam 264402110 BAM chimeric harmonized CPTAC3 183bed3e-a046-42b7-85a4-2b6b0ccb4cdb ab9c4886f8308cedf7ca1484b1027154 { 'aliquot_tag': 'ALQ_33012083', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02494.RNA-Seq.chimeric.T.hg38 C3N-02494 LSCC RNA-Seq tumor CPT0234790009 9feb3d25-5a59-412b-bed5-d7f11f82ad70.rna_seq.chimeric.gdc_realn.bam 181686227 BAM chimeric harmonized CPTAC3 43cdef0f-7c93-41da-8538-e4714a66975f a745492fb41511f145ccd19d06e304db { 'aliquot_tag': 'ALQ_2538bed6', 'gdc_sample_type': 'Primary Tumor' } C3N-02494.RNA-Seq.genomic.A.hg38 C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 8c279cd6-6bfa-4f39-ac40-d631db50420c.rna_seq.genomic.gdc_realn.bam 9174103511 BAM genomic harmonized CPTAC3 fed4a49c-274f-49c3-b44b-5d3286760766 05bed9630dc65a6ba64c5ac6539a6bde { 'aliquot_tag': 'ALQ_33012083', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02494.RNA-Seq.genomic.T.hg38 C3N-02494 LSCC RNA-Seq tumor CPT0234790009 9feb3d25-5a59-412b-bed5-d7f11f82ad70.rna_seq.genomic.gdc_realn.bam 9151120983 BAM genomic harmonized CPTAC3 47caf7df-44d6-4513-9759-b976dfafea05 d61cf347740378580f137f0e6f35923d { 'aliquot_tag': 'ALQ_2538bed6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02494.RNA-Seq.R1_L003.T C3N-02494 LSCC RNA-Seq tumor CPT0234790009 190208_UNC32-K00270_0146_BH3V2WBBXY_CCGTCC_S11_L003_R1_001.fastq.gz 4007001137 FASTQ R1_L003 unaligned CPTAC3 ec07c5cb-5d8d-4382-b470-fa95175226d8 edfb0b561a21baa9797de2e677fcf20f { 'aliquot_tag': 'ALQ_2538bed6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02494.RNA-Seq.R1_L005.A C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 190208_UNC32-K00270_0146_BH3V2WBBXY_ATCACG_S19_L005_R1_001.fastq.gz 4363291646 FASTQ R1_L005 unaligned CPTAC3 c5b51e85-bd31-4a9a-a486-3158e4776ea3 9173db9a05122b687a26a1c2b321fcfb { 'aliquot_tag': 'ALQ_33012083', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02494.RNA-Seq.R2_L003.T C3N-02494 LSCC RNA-Seq tumor CPT0234790009 190208_UNC32-K00270_0146_BH3V2WBBXY_CCGTCC_S11_L003_R2_001.fastq.gz 4148284200 FASTQ R2_L003 unaligned CPTAC3 d20fa121-a822-4e90-a5d9-eabe70735afc b011c0f82696a827e28a6e2b4c8f340a { 'aliquot_tag': 'ALQ_2538bed6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02494.RNA-Seq.R2_L005.A C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 190208_UNC32-K00270_0146_BH3V2WBBXY_ATCACG_S19_L005_R2_001.fastq.gz 4301757699 FASTQ R2_L005 unaligned CPTAC3 0f456c69-99d0-4fdb-8bf0-27b41186204a 232a74113d36aaa3ef2d824d9390fac7 { 'aliquot_tag': 'ALQ_33012083', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02494.RNA-Seq.genomic.T.hg38 C3N-02494 LSCC RNA-Seq tumor CPT0234790009 9feb3d25-5a59-412b-bed5-d7f11f82ad70.rna_seq.genomic.gdc_realn.bam 9151120983 BAM genomic harmonized CPTAC3 d989a26b-e041-4cc8-aaee-0cc28c43d8c5 d61cf347740378580f137f0e6f35923d { 'aliquot_tag': 'ALQ_2538bed6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02494.RNA-Seq.R1_L003.T C3N-02494 LSCC RNA-Seq tumor CPT0234790009 190208_UNC32-K00270_0146_BH3V2WBBXY_CCGTCC_S11_L003_R1_001.fastq.gz 4007001137 FASTQ R1_L003 unaligned CPTAC3 ec07c5cb-5d8d-4382-b470-fa95175226d8 edfb0b561a21baa9797de2e677fcf20f { 'aliquot_tag': 'ALQ_2538bed6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02494.RNA-Seq.R1_L005.A C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 190208_UNC32-K00270_0146_BH3V2WBBXY_ATCACG_S19_L005_R1_001.fastq.gz 4363291646 FASTQ R1_L005 unaligned CPTAC3 c5b51e85-bd31-4a9a-a486-3158e4776ea3 9173db9a05122b687a26a1c2b321fcfb { 'aliquot_tag': 'ALQ_33012083', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02494.RNA-Seq.R2_L003.T C3N-02494 LSCC RNA-Seq tumor CPT0234790009 190208_UNC32-K00270_0146_BH3V2WBBXY_CCGTCC_S11_L003_R2_001.fastq.gz 4148284200 FASTQ R2_L003 unaligned CPTAC3 d20fa121-a822-4e90-a5d9-eabe70735afc b011c0f82696a827e28a6e2b4c8f340a { 'aliquot_tag': 'ALQ_2538bed6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02494.RNA-Seq.R2_L005.A C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 190208_UNC32-K00270_0146_BH3V2WBBXY_ATCACG_S19_L005_R2_001.fastq.gz 4301757699 FASTQ R2_L005 unaligned CPTAC3 0f456c69-99d0-4fdb-8bf0-27b41186204a 232a74113d36aaa3ef2d824d9390fac7 { 'aliquot_tag': 'ALQ_33012083', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-02494.RNA-Seq.transcriptome.A.hg38 C3N-02494 LSCC RNA-Seq tissue_normal CPT0234820006 8c279cd6-6bfa-4f39-ac40-d631db50420c.rna_seq.transcriptome.gdc_realn.bam 9553506951 BAM transcriptome harmonized CPTAC3 d8e5db20-cbd4-4471-83ff-d23107c20190 13a16a24ca52fcdd02ec110aeb1bbd67 { 'aliquot_tag': 'ALQ_33012083', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02494.RNA-Seq.transcriptome.T.hg38 C3N-02494 LSCC RNA-Seq tumor CPT0234790009 9feb3d25-5a59-412b-bed5-d7f11f82ad70.rna_seq.transcriptome.gdc_realn.bam 9581532854 BAM transcriptome harmonized CPTAC3 e4b5c49c-e0ab-438c-90c2-c2001bf74de4 e5399d1e5be3525efd609e4947a56bd6 { 'aliquot_tag': 'ALQ_2538bed6', 'gdc_sample_type': 'Primary Tumor' } C3N-02494.WGS.N C3N-02494 LSCC WGS blood_normal CPT0234910002 CPT0234910002.WholeGenome.RP-1303.bam 128130341366 BAM aligned CPTAC3 c89c8bc1-2bb3-4e82-8df0-23688854dd5e 1e52a49ee1bcaf195cdd51e0480d6046 { 'aliquot_tag': 'ALQ_b8904def', 'gdc_sample_type': 'Blood Derived Normal' } @@ -31494,12 +33630,12 @@ C3N-02523.miRNA-Seq.T C3N-02523 LSCC miRNA-Seq tumor CPT0234930010 190206_UNC31- C3N-02523.miRNA-Seq.T.hg38 C3N-02523 LSCC miRNA-Seq tumor CPT0234930010 a2c199ad-7185-449a-b745-bbc169c1eab8_mirnaseq_gdc_realn.bam 200536674 BAM harmonized CPTAC3 cdc9b04c-fe23-49c0-b625-1a31db37921c a73212e532443eaa17e4a8f63ec3b3fd { 'aliquot_tag': 'ALQ_35454ee2', 'gdc_sample_type': 'Primary Tumor' } C3N-02523.RNA-Seq.chimeric.A.hg38 C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 27f60e79-54d1-443a-bdf7-645fda1bde47.rna_seq.chimeric.gdc_realn.bam 354241711 BAM chimeric harmonized CPTAC3 4cb78810-546b-4a2c-8fd7-7d101f2ee17e 24fead17f0a258dd8e0c9e2b077557c1 { 'aliquot_tag': 'ALQ_3d7a1fa0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02523.RNA-Seq.chimeric.T.hg38 C3N-02523 LSCC RNA-Seq tumor CPT0234930010 67a7055f-3804-45b4-b95d-73c4ca6b78d1.rna_seq.chimeric.gdc_realn.bam 169853205 BAM chimeric harmonized CPTAC3 3aca9019-a283-481d-be69-6bcbfc856057 d51fc722c48b61f138656a88d78c7473 { 'aliquot_tag': 'ALQ_35454ee2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02523.RNA-Seq.genomic.A.hg38 C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 27f60e79-54d1-443a-bdf7-645fda1bde47.rna_seq.genomic.gdc_realn.bam 9246631727 BAM genomic harmonized CPTAC3 2e1abb79-717b-4ea9-aa5b-f3fb2463cfc5 506dc0c983edd4bcdc28a628022f80c9 { 'aliquot_tag': 'ALQ_3d7a1fa0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02523.RNA-Seq.genomic.A.hg38 C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 27f60e79-54d1-443a-bdf7-645fda1bde47.rna_seq.genomic.gdc_realn.bam 9246631727 BAM genomic harmonized CPTAC3 423ff3ef-6001-49b4-836d-a5f9d63948d3 506dc0c983edd4bcdc28a628022f80c9 { 'aliquot_tag': 'ALQ_3d7a1fa0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02523.RNA-Seq.genomic.T.hg38 C3N-02523 LSCC RNA-Seq tumor CPT0234930010 67a7055f-3804-45b4-b95d-73c4ca6b78d1.rna_seq.genomic.gdc_realn.bam 9512638289 BAM genomic harmonized CPTAC3 2e8319ca-615e-48a5-94a1-2954213c378c f32a0d07aed30eb6c4cd8687467e91e1 { 'aliquot_tag': 'ALQ_35454ee2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02523.RNA-Seq.R1_L001.T C3N-02523 LSCC RNA-Seq tumor CPT0234930010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L001_R1_001.fastq.gz 4473182327 FASTQ R1_L001 unaligned CPTAC3 7fcf5000-c1b8-40fb-9cad-62e04700cd75 3c2aa91ec4a5ba6c1f02fb3edc9b2074 { 'aliquot_tag': 'ALQ_35454ee2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02523.RNA-Seq.R1_L005.A C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 190208_UNC32-K00270_0146_BH3V2WBBXY_CGATGT_S18_L005_R1_001.fastq.gz 4428688721 FASTQ R1_L005 unaligned CPTAC3 eddb9e49-7438-478e-912b-aa8032c9fcb3 4e3328569bb3e234453cc2124d2aadac { 'aliquot_tag': 'ALQ_3d7a1fa0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02523.RNA-Seq.R2_L001.T C3N-02523 LSCC RNA-Seq tumor CPT0234930010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L001_R2_001.fastq.gz 5144091952 FASTQ R2_L001 unaligned CPTAC3 cb2c0f2f-c163-4515-94a8-93446e8e92d8 44227cc7bfda4e3fd88099cf77a8b937 { 'aliquot_tag': 'ALQ_35454ee2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02523.RNA-Seq.R2_L005.A C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 190208_UNC32-K00270_0146_BH3V2WBBXY_CGATGT_S18_L005_R2_001.fastq.gz 4829470349 FASTQ R2_L005 unaligned CPTAC3 e6379fdb-c1fd-47fe-b7a2-c2932b349cdb ea2b59c96381ff2a547197022c7caaa4 { 'aliquot_tag': 'ALQ_3d7a1fa0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02523.RNA-Seq.R1_L001.T C3N-02523 LSCC RNA-Seq tumor CPT0234930010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L001_R1_001.fastq.gz 4473182327 FASTQ R1_L001 unaligned CPTAC3 7fcf5000-c1b8-40fb-9cad-62e04700cd75 3c2aa91ec4a5ba6c1f02fb3edc9b2074 { 'aliquot_tag': 'ALQ_35454ee2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02523.RNA-Seq.R1_L005.A C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 190208_UNC32-K00270_0146_BH3V2WBBXY_CGATGT_S18_L005_R1_001.fastq.gz 4428688721 FASTQ R1_L005 unaligned CPTAC3 eddb9e49-7438-478e-912b-aa8032c9fcb3 4e3328569bb3e234453cc2124d2aadac { 'aliquot_tag': 'ALQ_3d7a1fa0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02523.RNA-Seq.R2_L001.T C3N-02523 LSCC RNA-Seq tumor CPT0234930010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L001_R2_001.fastq.gz 5144091952 FASTQ R2_L001 unaligned CPTAC3 cb2c0f2f-c163-4515-94a8-93446e8e92d8 44227cc7bfda4e3fd88099cf77a8b937 { 'aliquot_tag': 'ALQ_35454ee2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02523.RNA-Seq.R2_L005.A C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 190208_UNC32-K00270_0146_BH3V2WBBXY_CGATGT_S18_L005_R2_001.fastq.gz 4829470349 FASTQ R2_L005 unaligned CPTAC3 e6379fdb-c1fd-47fe-b7a2-c2932b349cdb ea2b59c96381ff2a547197022c7caaa4 { 'aliquot_tag': 'ALQ_3d7a1fa0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-02523.RNA-Seq.transcriptome.A.hg38 C3N-02523 LSCC RNA-Seq tissue_normal CPT0234950007 27f60e79-54d1-443a-bdf7-645fda1bde47.rna_seq.transcriptome.gdc_realn.bam 10125113506 BAM transcriptome harmonized CPTAC3 bb3874ce-c4e8-448d-aba6-64c633c57e95 f7c68e3ebd2cd6389bfae6a7abc7fe54 { 'aliquot_tag': 'ALQ_3d7a1fa0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02523.RNA-Seq.transcriptome.T.hg38 C3N-02523 LSCC RNA-Seq tumor CPT0234930010 67a7055f-3804-45b4-b95d-73c4ca6b78d1.rna_seq.transcriptome.gdc_realn.bam 11787662070 BAM transcriptome harmonized CPTAC3 084f4ba4-548f-4808-bfdc-96af078f0933 2b854a4f2851a8a69150ea2bf8b312d5 { 'aliquot_tag': 'ALQ_35454ee2', 'gdc_sample_type': 'Primary Tumor' } C3N-02523.WGS.N C3N-02523 LSCC WGS blood_normal CPT0235050002 CPT0235050002.WholeGenome.RP-1303.bam 115887155848 BAM aligned CPTAC3 f460b8a7-65d8-4a6f-8522-14b306c317f1 11f7c50cb5099599e93d55aba829b625 { 'aliquot_tag': 'ALQ_cc68b153', 'gdc_sample_type': 'Blood Derived Normal' } @@ -31522,12 +33658,12 @@ C3N-02529.miRNA-Seq.T C3N-02529 LUAD miRNA-Seq tumor CPT0147480007 181108_UNC31- C3N-02529.miRNA-Seq.T.hg38 C3N-02529 LUAD miRNA-Seq tumor CPT0147480007 e03fb7fd-b1e2-44d6-9dee-97504204be23_mirnaseq_gdc_realn.bam 230001959 BAM harmonized CPTAC3 d9a7bba1-177c-4cc7-8eff-f4ee03ba5784 0613eba3cd332334ac9f225bc2ad5bae { 'aliquot_tag': 'ALQ_7bd4e78e', 'gdc_sample_type': 'Primary Tumor' } C3N-02529.RNA-Seq.chimeric.A.hg38 C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 b6d05718-ee0c-46be-b612-03d2b37662cf.rna_seq.chimeric.gdc_realn.bam 79805748 BAM chimeric harmonized CPTAC3 8f0f675c-648a-4cea-9ba9-101c7a35b2f3 1b48e16af85646119d1c24da2bbc63f1 { 'aliquot_tag': 'ALQ_f7ff4f7c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02529.RNA-Seq.chimeric.T.hg38 C3N-02529 LUAD RNA-Seq tumor CPT0147480007 2743de97-cf9e-47f1-8ad9-691976703802.rna_seq.chimeric.gdc_realn.bam 50359661 BAM chimeric harmonized CPTAC3 8874cd60-73ec-4891-ab6d-cd7cdf4619a7 b9c94cb3f5edbc1b6a385f55119babf9 { 'aliquot_tag': 'ALQ_7bd4e78e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02529.RNA-Seq.genomic.A.hg38 C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 b6d05718-ee0c-46be-b612-03d2b37662cf.rna_seq.genomic.gdc_realn.bam 9016869023 BAM genomic harmonized CPTAC3 88b7bbd4-11b8-435f-af2f-3202e91aa3f9 a72b97eb4c7f7e2a982c7a0df4e887de { 'aliquot_tag': 'ALQ_f7ff4f7c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02529.RNA-Seq.genomic.T.hg38 C3N-02529 LUAD RNA-Seq tumor CPT0147480007 2743de97-cf9e-47f1-8ad9-691976703802.rna_seq.genomic.gdc_realn.bam 8682101727 BAM genomic harmonized CPTAC3 494ffe71-1a8e-4c39-a4b9-4d2a13f536ee 6d443692e3b182a42133c7b3fafa3a8a { 'aliquot_tag': 'ALQ_7bd4e78e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02529.RNA-Seq.R1_L001.A C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L001_R1_001.fastq.gz 4082705048 FASTQ R1_L001 unaligned CPTAC3 0d16714e-8922-46ff-b066-0d0ba69a634c 558fb913912f59273e8450b9f8ab20f1 { 'aliquot_tag': 'ALQ_f7ff4f7c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02529.RNA-Seq.R1_L007.T C3N-02529 LUAD RNA-Seq tumor CPT0147480007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L007_R1_001.fastq.gz 4003752681 FASTQ R1_L007 unaligned CPTAC3 84d3b452-6532-4edb-b8aa-9adb99a90607 1948f8f19ded82963009205720ef8a19 { 'aliquot_tag': 'ALQ_7bd4e78e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02529.RNA-Seq.R2_L001.A C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L001_R2_001.fastq.gz 4519942921 FASTQ R2_L001 unaligned CPTAC3 654448c0-1187-46b9-88cc-ea204b93a332 1bcc55be394d4980884e05af6ffc99a2 { 'aliquot_tag': 'ALQ_f7ff4f7c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02529.RNA-Seq.R2_L007.T C3N-02529 LUAD RNA-Seq tumor CPT0147480007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L007_R2_001.fastq.gz 4348550616 FASTQ R2_L007 unaligned CPTAC3 e95a3b9d-018e-4bc9-98d1-afb241b0d4ba 2a6de991c74267f956bd92faba122187 { 'aliquot_tag': 'ALQ_7bd4e78e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02529.RNA-Seq.genomic.A.hg38 C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 b6d05718-ee0c-46be-b612-03d2b37662cf.rna_seq.genomic.gdc_realn.bam 9016869023 BAM genomic harmonized CPTAC3 5462693c-dd8d-47cb-9812-15b628b414a3 a72b97eb4c7f7e2a982c7a0df4e887de { 'aliquot_tag': 'ALQ_f7ff4f7c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02529.RNA-Seq.genomic.T.hg38 C3N-02529 LUAD RNA-Seq tumor CPT0147480007 2743de97-cf9e-47f1-8ad9-691976703802.rna_seq.genomic.gdc_realn.bam 8682101727 BAM genomic harmonized CPTAC3 a2f44320-2f78-4b91-a8b1-4d225c0aa395 6d443692e3b182a42133c7b3fafa3a8a { 'aliquot_tag': 'ALQ_7bd4e78e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02529.RNA-Seq.R1_L001.A C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L001_R1_001.fastq.gz 4082705048 FASTQ R1_L001 unaligned CPTAC3 0d16714e-8922-46ff-b066-0d0ba69a634c 558fb913912f59273e8450b9f8ab20f1 { 'aliquot_tag': 'ALQ_f7ff4f7c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-02529.RNA-Seq.R1_L007.T C3N-02529 LUAD RNA-Seq tumor CPT0147480007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L007_R1_001.fastq.gz 4003752681 FASTQ R1_L007 unaligned CPTAC3 84d3b452-6532-4edb-b8aa-9adb99a90607 1948f8f19ded82963009205720ef8a19 { 'aliquot_tag': 'ALQ_7bd4e78e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02529.RNA-Seq.R2_L001.A C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACTTGA_S1_L001_R2_001.fastq.gz 4519942921 FASTQ R2_L001 unaligned CPTAC3 654448c0-1187-46b9-88cc-ea204b93a332 1bcc55be394d4980884e05af6ffc99a2 { 'aliquot_tag': 'ALQ_f7ff4f7c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-02529.RNA-Seq.R2_L007.T C3N-02529 LUAD RNA-Seq tumor CPT0147480007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTCCGC_S4_L007_R2_001.fastq.gz 4348550616 FASTQ R2_L007 unaligned CPTAC3 e95a3b9d-018e-4bc9-98d1-afb241b0d4ba 2a6de991c74267f956bd92faba122187 { 'aliquot_tag': 'ALQ_7bd4e78e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02529.RNA-Seq.transcriptome.A.hg38 C3N-02529 LUAD RNA-Seq tissue_normal CPT0147500006 b6d05718-ee0c-46be-b612-03d2b37662cf.rna_seq.transcriptome.gdc_realn.bam 10598106692 BAM transcriptome harmonized CPTAC3 9847ff2b-4e4e-4b35-978a-4f0da72d34ce 046618ca221b80ad700dccf3c6ecfbb1 { 'aliquot_tag': 'ALQ_f7ff4f7c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02529.RNA-Seq.transcriptome.T.hg38 C3N-02529 LUAD RNA-Seq tumor CPT0147480007 2743de97-cf9e-47f1-8ad9-691976703802.rna_seq.transcriptome.gdc_realn.bam 10929931923 BAM transcriptome harmonized CPTAC3 bd4bc38e-8820-4326-b034-c952e8eb5e06 ab1749817ad430a3d5be1be4c3bccbc9 { 'aliquot_tag': 'ALQ_7bd4e78e', 'gdc_sample_type': 'Primary Tumor' } C3N-02529.WGS.A C3N-02529 LUAD WGS tissue_normal CPT0147500009 CPT0147500009.WholeGenome.RP-1303.bam 61312758740 BAM aligned CPTAC3 3ec03c26-4933-41be-b3d0-e6dc60713ab1 22c901aa2b1c9a927302e21e2817ebf8 { 'aliquot_tag': 'ALQ_674052ed', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31552,12 +33688,12 @@ C3N-02572.miRNA-Seq.T C3N-02572 LUAD miRNA-Seq tumor CPT0147580007 181108_UNC31- C3N-02572.miRNA-Seq.T.hg38 C3N-02572 LUAD miRNA-Seq tumor CPT0147580007 7a43a955-f7ac-4c67-ab9c-bac03efaab13_mirnaseq_gdc_realn.bam 237877999 BAM harmonized CPTAC3 c61837c1-ce6a-49bc-abf0-c404509eb42b fb8c91a484fd9d55c8f941b690cb517f { 'aliquot_tag': 'ALQ_b088342b', 'gdc_sample_type': 'Primary Tumor' } C3N-02572.RNA-Seq.chimeric.A.hg38 C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 40ddf736-9f26-4c0c-9fb9-597760188a3e.rna_seq.chimeric.gdc_realn.bam 64434030 BAM chimeric harmonized CPTAC3 bc82bba1-3029-4420-9ff3-b6faef8900bd c735b8894f2376adf4b6dd400c942d92 { 'aliquot_tag': 'ALQ_716b3dd2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02572.RNA-Seq.chimeric.T.hg38 C3N-02572 LUAD RNA-Seq tumor CPT0147580007 8ed26846-12d6-462d-be1a-521ef4bf2c81.rna_seq.chimeric.gdc_realn.bam 42503047 BAM chimeric harmonized CPTAC3 1aed8c56-c11d-4c9f-98bb-155e9a5905d0 00d00e9d2047819f4aa8b23656980b88 { 'aliquot_tag': 'ALQ_b088342b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02572.RNA-Seq.genomic.A.hg38 C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 40ddf736-9f26-4c0c-9fb9-597760188a3e.rna_seq.genomic.gdc_realn.bam 6485207222 BAM genomic harmonized CPTAC3 82f55512-79ce-4d53-a725-436ef8f48667 9f8ed01aea7b0b71c00044cadd5a6f27 { 'aliquot_tag': 'ALQ_716b3dd2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02572.RNA-Seq.genomic.T.hg38 C3N-02572 LUAD RNA-Seq tumor CPT0147580007 8ed26846-12d6-462d-be1a-521ef4bf2c81.rna_seq.genomic.gdc_realn.bam 8651981783 BAM genomic harmonized CPTAC3 f6ce9e88-2f2c-44b3-96c1-26b6a0d8b736 fcf35d756f63ae10ccd2405a7293f476 { 'aliquot_tag': 'ALQ_b088342b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02572.RNA-Seq.R1_L001.A C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L001_R1_001.fastq.gz 3056501435 FASTQ R1_L001 unaligned CPTAC3 be7f9664-ce33-4b9b-aec5-03249a75ea9f 0c1f0062f4a700d95378adc5be680fa8 { 'aliquot_tag': 'ALQ_716b3dd2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02572.RNA-Seq.R1_L006.T C3N-02572 LUAD RNA-Seq tumor CPT0147580007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGAAA_S23_L006_R1_001.fastq.gz 4040981378 FASTQ R1_L006 unaligned CPTAC3 bc10b6b0-67c4-4698-8ec0-ded169a99a3d 1ed85db9dc0bf0b70355e2781177584a { 'aliquot_tag': 'ALQ_b088342b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02572.RNA-Seq.R2_L001.A C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L001_R2_001.fastq.gz 3389884363 FASTQ R2_L001 unaligned CPTAC3 37830f1f-1ff1-41ae-af24-91010de7eb1a 975dccfa514aaff43de359542b502cd1 { 'aliquot_tag': 'ALQ_716b3dd2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02572.RNA-Seq.R2_L006.T C3N-02572 LUAD RNA-Seq tumor CPT0147580007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGAAA_S23_L006_R2_001.fastq.gz 4160211180 FASTQ R2_L006 unaligned CPTAC3 5baffbc9-00eb-43de-9948-317662cc6ed6 8a065674ac25e705f4be61380eed17dc { 'aliquot_tag': 'ALQ_b088342b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02572.RNA-Seq.genomic.A.hg38 C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 40ddf736-9f26-4c0c-9fb9-597760188a3e.rna_seq.genomic.gdc_realn.bam 6485207222 BAM genomic harmonized CPTAC3 9ebf81f1-64c2-48cf-a363-05bbb0a7148c 9f8ed01aea7b0b71c00044cadd5a6f27 { 'aliquot_tag': 'ALQ_716b3dd2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02572.RNA-Seq.genomic.T.hg38 C3N-02572 LUAD RNA-Seq tumor CPT0147580007 8ed26846-12d6-462d-be1a-521ef4bf2c81.rna_seq.genomic.gdc_realn.bam 8651981783 BAM genomic harmonized CPTAC3 2e905be0-f92a-4865-a380-47b2bd7fa45e fcf35d756f63ae10ccd2405a7293f476 { 'aliquot_tag': 'ALQ_b088342b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02572.RNA-Seq.R1_L001.A C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L001_R1_001.fastq.gz 3056501435 FASTQ R1_L001 unaligned CPTAC3 be7f9664-ce33-4b9b-aec5-03249a75ea9f 0c1f0062f4a700d95378adc5be680fa8 { 'aliquot_tag': 'ALQ_716b3dd2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-02572.RNA-Seq.R1_L006.T C3N-02572 LUAD RNA-Seq tumor CPT0147580007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGAAA_S23_L006_R1_001.fastq.gz 4040981378 FASTQ R1_L006 unaligned CPTAC3 bc10b6b0-67c4-4698-8ec0-ded169a99a3d 1ed85db9dc0bf0b70355e2781177584a { 'aliquot_tag': 'ALQ_b088342b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02572.RNA-Seq.R2_L001.A C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 180508_UNC31-K00269_0128_BHTY7KBBXX_GATCAG_S4_L001_R2_001.fastq.gz 3389884363 FASTQ R2_L001 unaligned CPTAC3 37830f1f-1ff1-41ae-af24-91010de7eb1a 975dccfa514aaff43de359542b502cd1 { 'aliquot_tag': 'ALQ_716b3dd2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-02572.RNA-Seq.R2_L006.T C3N-02572 LUAD RNA-Seq tumor CPT0147580007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGAAA_S23_L006_R2_001.fastq.gz 4160211180 FASTQ R2_L006 unaligned CPTAC3 5baffbc9-00eb-43de-9948-317662cc6ed6 8a065674ac25e705f4be61380eed17dc { 'aliquot_tag': 'ALQ_b088342b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-02572.RNA-Seq.transcriptome.A.hg38 C3N-02572 LUAD RNA-Seq tissue_normal CPT0147600006 40ddf736-9f26-4c0c-9fb9-597760188a3e.rna_seq.transcriptome.gdc_realn.bam 7478467209 BAM transcriptome harmonized CPTAC3 da12f96e-02b5-41ee-87f8-0a49bf35bf78 3fff0b96ec3b1aa3730620e166ebc76a { 'aliquot_tag': 'ALQ_716b3dd2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02572.RNA-Seq.transcriptome.T.hg38 C3N-02572 LUAD RNA-Seq tumor CPT0147580007 8ed26846-12d6-462d-be1a-521ef4bf2c81.rna_seq.transcriptome.gdc_realn.bam 9963082517 BAM transcriptome harmonized CPTAC3 ac10974b-8e44-4552-8fc4-b9527530f43d f52bc83083e022588ea7a49f241c7c86 { 'aliquot_tag': 'ALQ_b088342b', 'gdc_sample_type': 'Primary Tumor' } C3N-02572.WGS.A C3N-02572 LUAD WGS tissue_normal CPT0147600009 CPT0147600009.WholeGenome.RP-1303.bam 61272354419 BAM aligned CPTAC3 d2e68eee-60f4-42d7-901f-b7bb5a5f8e91 d91229d3e73c48e10d36624c0cd61d5d { 'aliquot_tag': 'ALQ_e1d42043', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31578,8 +33714,8 @@ C3N-02573.miRNA-Seq.T C3N-02573 PDA miRNA-Seq tumor CPT0183450011 190712_UNC32-K C3N-02573.miRNA-Seq.T.hg38 C3N-02573 PDA miRNA-Seq tumor CPT0183450011 fc47ff09-3067-4751-925a-c6436aac7dab_mirnaseq_gdc_realn.bam 232658937 BAM harmonized CPTAC3 41668b57-5a93-4573-b30b-8b40777594ad b3827e86645e647efce84a6019a4bef0 { 'aliquot_tag': 'ALQ_d0dc8617', 'gdc_sample_type': 'Primary Tumor' } C3N-02573.RNA-Seq.chimeric.T.hg38 C3N-02573 PDA RNA-Seq tumor CPT0183450011 30aea25d-f394-43f7-b9cc-fb4b7b11f441.rna_seq.chimeric.gdc_realn.bam 49773356 BAM chimeric harmonized CPTAC3 06e4f396-21ab-4cf9-a716-cc94606eb3d0 441079725dd93ee9f127e84dff6a4548 { 'aliquot_tag': 'ALQ_d0dc8617', 'gdc_sample_type': 'Primary Tumor' } C3N-02573.RNA-Seq.genomic.T.hg38 C3N-02573 PDA RNA-Seq tumor CPT0183450011 30aea25d-f394-43f7-b9cc-fb4b7b11f441.rna_seq.genomic.gdc_realn.bam 9746990781 BAM genomic harmonized CPTAC3 f07eb643-9b55-4571-84be-e6c1203fa475 39b1d3f943f64677aad8911d31869e6d { 'aliquot_tag': 'ALQ_d0dc8617', 'gdc_sample_type': 'Primary Tumor' } -C3N-02573.RNA-Seq.R1_L003.T C3N-02573 PDA RNA-Seq tumor CPT0183450011 190614_UNC32-K00270_0182_BH7777BBXY_GCGCAAGC-TCACGCCG_S10_L003_R1_001.fastq.gz 3999602643 FASTQ R1_L003 unaligned CPTAC3 55c288e5-b38d-459b-bfef-da66a25b59ec c0227be34c258d1476714bb325afd68f { 'aliquot_tag': 'ALQ_d0dc8617', 'gdc_sample_type': 'Primary Tumor' } -C3N-02573.RNA-Seq.R2_L003.T C3N-02573 PDA RNA-Seq tumor CPT0183450011 190614_UNC32-K00270_0182_BH7777BBXY_GCGCAAGC-TCACGCCG_S10_L003_R2_001.fastq.gz 4446247729 FASTQ R2_L003 unaligned CPTAC3 51cd1a61-40ad-4a11-8a9f-59674a76b4ca 58172d00a3167e17630071a6ac237985 { 'aliquot_tag': 'ALQ_d0dc8617', 'gdc_sample_type': 'Primary Tumor' } +C3N-02573.RNA-Seq.R1_L003.T C3N-02573 PDA RNA-Seq tumor CPT0183450011 190614_UNC32-K00270_0182_BH7777BBXY_GCGCAAGC-TCACGCCG_S10_L003_R1_001.fastq.gz 3999602643 FASTQ R1_L003 unaligned CPTAC3 55c288e5-b38d-459b-bfef-da66a25b59ec c0227be34c258d1476714bb325afd68f { 'aliquot_tag': 'ALQ_d0dc8617', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02573.RNA-Seq.R2_L003.T C3N-02573 PDA RNA-Seq tumor CPT0183450011 190614_UNC32-K00270_0182_BH7777BBXY_GCGCAAGC-TCACGCCG_S10_L003_R2_001.fastq.gz 4446247729 FASTQ R2_L003 unaligned CPTAC3 51cd1a61-40ad-4a11-8a9f-59674a76b4ca 58172d00a3167e17630071a6ac237985 { 'aliquot_tag': 'ALQ_d0dc8617', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-02573.RNA-Seq.transcriptome.T.hg38 C3N-02573 PDA RNA-Seq tumor CPT0183450011 30aea25d-f394-43f7-b9cc-fb4b7b11f441.rna_seq.transcriptome.gdc_realn.bam 10159279857 BAM transcriptome harmonized CPTAC3 a31a1c91-ea22-439a-80e2-0f3ee9ba34dc 08ba2ad0f8b05d5c9d5ac293b344993a { 'aliquot_tag': 'ALQ_d0dc8617', 'gdc_sample_type': 'Primary Tumor' } C3N-02573.WGS.N C3N-02573 PDA WGS blood_normal CPT0183510002 CPT0183510002.WholeGenome.RP-1303.bam 86506713400 BAM aligned CPTAC3 1b57de94-25ec-4dfa-81b8-fd019c919578 f3f929da3e54371a88c6124fcbdfd4e6 { 'aliquot_tag': 'ALQ_6e129389', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02573.WGS.N.hg38 C3N-02573 PDA WGS blood_normal CPT0183510002 935b0c08-6d0d-427b-8161-738fda126ac0_wgs_gdc_realn.bam 125831158753 BAM harmonized CPTAC3 773bac6f-f93d-4725-a0f9-4ea36c8a6f95 f9e20711b91de6964847f5a67f3db782 { 'aliquot_tag': 'ALQ_6e129389', 'gdc_sample_type': 'Blood Derived Normal' } @@ -31597,12 +33733,12 @@ C3N-02575.miRNA-Seq.A C3N-02575 LSCC miRNA-Seq tissue_normal CPT0147700009 18121 C3N-02575.miRNA-Seq.A.hg38 C3N-02575 LSCC miRNA-Seq tissue_normal CPT0147700009 893e211d-de9c-4734-a9c1-470f69e1b876_mirnaseq_gdc_realn.bam 230996275 BAM harmonized CPTAC3 361c57bc-c528-42b8-9719-eb6cc09c5d84 51eb493bb8e151d7d37572f99123bc1d { 'aliquot_tag': 'ALQ_2a88f3e6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02575.RNA-Seq.chimeric.A.hg38 C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 efb23fdd-bbab-405e-a13b-8c12c6a15451.rna_seq.chimeric.gdc_realn.bam 28571309 BAM chimeric harmonized CPTAC3 37def7a5-fae0-4938-83c5-cea7d48c6239 b14216735e8906d6d90b103fca65c10c { 'aliquot_tag': 'ALQ_2a88f3e6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02575.RNA-Seq.chimeric.T.hg38 C3N-02575 LSCC RNA-Seq tumor CPT0147680007 ff244a44-5446-4e93-ae94-221eafd571ec.rna_seq.chimeric.gdc_realn.bam 22555736 BAM chimeric harmonized CPTAC3 2703efa8-b625-42e7-b3e1-3a851c5e0c8c 5c77fb8a57591ad74f22c7abf4b5382b { 'aliquot_tag': 'ALQ_361c4685', 'gdc_sample_type': 'Primary Tumor' } -C3N-02575.RNA-Seq.genomic.A.hg38 C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 efb23fdd-bbab-405e-a13b-8c12c6a15451.rna_seq.genomic.gdc_realn.bam 8212406155 BAM genomic harmonized CPTAC3 1c2f7952-7879-43a9-bf6f-1b5c9faa1167 381e11ba34f54c50315ea00cd6aa868f { 'aliquot_tag': 'ALQ_2a88f3e6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02575.RNA-Seq.genomic.A.hg38 C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 efb23fdd-bbab-405e-a13b-8c12c6a15451.rna_seq.genomic.gdc_realn.bam 8212406155 BAM genomic harmonized CPTAC3 7e3077c3-fcdc-4248-91d3-13dcdc6cd2e3 381e11ba34f54c50315ea00cd6aa868f { 'aliquot_tag': 'ALQ_2a88f3e6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02575.RNA-Seq.genomic.T.hg38 C3N-02575 LSCC RNA-Seq tumor CPT0147680007 ff244a44-5446-4e93-ae94-221eafd571ec.rna_seq.genomic.gdc_realn.bam 6689313713 BAM genomic harmonized CPTAC3 e80000ea-665d-43b5-9cf6-880ee2d8fe28 9e3664ce3c92a5cdbf6601245a65946f { 'aliquot_tag': 'ALQ_361c4685', 'gdc_sample_type': 'Primary Tumor' } -C3N-02575.RNA-Seq.R1_L002.T C3N-02575 LSCC RNA-Seq tumor CPT0147680007 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 3050745078 FASTQ R1_L002 unaligned CPTAC3 4cad37ba-3071-4267-935a-153757a0e8f1 97c09c298363c72d90a4044a445d041a { 'aliquot_tag': 'ALQ_361c4685', 'gdc_sample_type': 'Primary Tumor' } -C3N-02575.RNA-Seq.R1_L006.A C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 180926_UNC31-K00269_0155_AHWN7WBBXX_CCGTCC_S24_L006_R1_001.fastq.gz 3833000070 FASTQ R1_L006 unaligned CPTAC3 ab65576a-9a88-4d65-9e89-261656233b75 055f3afbdce443913978436b8413b4d6 { 'aliquot_tag': 'ALQ_2a88f3e6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02575.RNA-Seq.R2_L002.T C3N-02575 LSCC RNA-Seq tumor CPT0147680007 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 3198833205 FASTQ R2_L002 unaligned CPTAC3 c247ec6d-6d79-41a6-a973-cd44eb7c4457 009f6e9a4434c67de8c691dccd54cde3 { 'aliquot_tag': 'ALQ_361c4685', 'gdc_sample_type': 'Primary Tumor' } -C3N-02575.RNA-Seq.R2_L006.A C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 180926_UNC31-K00269_0155_AHWN7WBBXX_CCGTCC_S24_L006_R2_001.fastq.gz 4008984424 FASTQ R2_L006 unaligned CPTAC3 dc38be81-3952-41c5-afd9-031991bf1733 7981223c2fc95a6b06976d64d24894d4 { 'aliquot_tag': 'ALQ_2a88f3e6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02575.RNA-Seq.R1_L002.T C3N-02575 LSCC RNA-Seq tumor CPT0147680007 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L002_R1_001.fastq.gz 3050745078 FASTQ R1_L002 unaligned CPTAC3 4cad37ba-3071-4267-935a-153757a0e8f1 97c09c298363c72d90a4044a445d041a { 'aliquot_tag': 'ALQ_361c4685', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02575.RNA-Seq.R1_L006.A C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 180926_UNC31-K00269_0155_AHWN7WBBXX_CCGTCC_S24_L006_R1_001.fastq.gz 3833000070 FASTQ R1_L006 unaligned CPTAC3 ab65576a-9a88-4d65-9e89-261656233b75 055f3afbdce443913978436b8413b4d6 { 'aliquot_tag': 'ALQ_2a88f3e6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02575.RNA-Seq.R2_L002.T C3N-02575 LSCC RNA-Seq tumor CPT0147680007 180926_UNC31-K00269_0155_AHWN7WBBXX_GAGTGG_S6_L002_R2_001.fastq.gz 3198833205 FASTQ R2_L002 unaligned CPTAC3 c247ec6d-6d79-41a6-a973-cd44eb7c4457 009f6e9a4434c67de8c691dccd54cde3 { 'aliquot_tag': 'ALQ_361c4685', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02575.RNA-Seq.R2_L006.A C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 180926_UNC31-K00269_0155_AHWN7WBBXX_CCGTCC_S24_L006_R2_001.fastq.gz 4008984424 FASTQ R2_L006 unaligned CPTAC3 dc38be81-3952-41c5-afd9-031991bf1733 7981223c2fc95a6b06976d64d24894d4 { 'aliquot_tag': 'ALQ_2a88f3e6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-02575.RNA-Seq.transcriptome.A.hg38 C3N-02575 LSCC RNA-Seq tissue_normal CPT0147700009 efb23fdd-bbab-405e-a13b-8c12c6a15451.rna_seq.transcriptome.gdc_realn.bam 10186113264 BAM transcriptome harmonized CPTAC3 503d875a-c4f2-4b84-bb29-16dccf4a81b3 c93b8caae93900737e51a0c4daaacb55 { 'aliquot_tag': 'ALQ_2a88f3e6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02575.RNA-Seq.transcriptome.T.hg38 C3N-02575 LSCC RNA-Seq tumor CPT0147680007 ff244a44-5446-4e93-ae94-221eafd571ec.rna_seq.transcriptome.gdc_realn.bam 9307043446 BAM transcriptome harmonized CPTAC3 dc0290a5-fc91-4d0c-bd16-60401079271b cb8af499c6029c078080718cbb3fcd79 { 'aliquot_tag': 'ALQ_361c4685', 'gdc_sample_type': 'Primary Tumor' } C3N-02575.WGS.A C3N-02575 LSCC WGS tissue_normal CPT0147700006 CPT0147700006.WholeGenome.RP-1303.bam 52409448964 BAM aligned CPTAC3 a206d830-86e3-4129-82e5-a29d64450e45 af855aa9642b5951e84b1898c998401c { 'aliquot_tag': 'ALQ_ba37ee77', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31625,16 +33761,16 @@ C3N-02577.miRNA-Seq.A C3N-02577 CCRCC miRNA-Seq tissue_normal CPT0183570009 1901 C3N-02577.miRNA-Seq.A.hg38 C3N-02577 CCRCC miRNA-Seq tissue_normal CPT0183570009 462a4054-514c-489e-9a80-70a7b072e6fc_mirnaseq_gdc_realn.bam 230982850 BAM harmonized CPTAC3 427d96a3-b120-4ca3-974e-57da845e9930 e99abb913a4dca4783e55ad93c8cc4d5 { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02577.miRNA-Seq.T C3N-02577 CCRCC miRNA-Seq tumor CPT0183550010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTCAGA_S40_L005_R1_001.unaln.bam 246691034 BAM unaligned CPTAC3 bad88f81-11c4-4993-9b5b-de7c441bf408 d0b4830a578a6ebb3a8c16fd50221d3f { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor' } C3N-02577.miRNA-Seq.T.hg38 C3N-02577 CCRCC miRNA-Seq tumor CPT0183550010 12327dca-0601-4e0b-83c6-810e0be22fd4_mirnaseq_gdc_realn.bam 277185419 BAM harmonized CPTAC3 fabc66fd-8aa1-45f0-8e12-317618127593 0f193c2c97e36c95db13488f8906c2b6 { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor' } -C3N-02577.RNA-Seq.chimeric.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 ad0457cb-ed93-4242-9f33-8402550f1f07.rna_seq.chimeric.gdc_realn.bam 72947919 BAM chimeric harmonized CPTAC3 c0b6979f-c04b-4ab9-9e60-7859413d0d46 4f92d80b04f12a28f1de21757d158538 { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02577.RNA-Seq.chimeric.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 ca37da37-b3d5-4465-a6f7-4ef432529ea3.rna_seq.chimeric.gdc_realn.bam 31638292 BAM chimeric harmonized CPTAC3 e8b60615-4882-4b10-881c-b198cb6bfe9b f9c086f50f5076c825ab1e98c7c94e8b { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor' } -C3N-02577.RNA-Seq.genomic.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 ad0457cb-ed93-4242-9f33-8402550f1f07.rna_seq.genomic.gdc_realn.bam 11885500328 BAM genomic harmonized CPTAC3 cfa228c3-7c9e-4390-8547-b6b1d00a42b3 f31d93bc4e8646f2c6447f42c0337cf1 { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02577.RNA-Seq.genomic.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 ca37da37-b3d5-4465-a6f7-4ef432529ea3.rna_seq.genomic.gdc_realn.bam 7114707921 BAM genomic harmonized CPTAC3 53331f4e-e699-4631-a28b-50703879d3bf f04ab20a9d0983931b5113d90a807257 { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor' } -C3N-02577.RNA-Seq.R1_L002.A C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L002_R1_001.fastq.gz 5208304399 FASTQ R1_L002 unaligned CPTAC3 469c3d80-5e8e-45b4-94f6-82310ac0be92 d9c24484c09386460fde6538953d204b { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02577.RNA-Seq.R1_L008.T C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L008_R1_001.fastq.gz 3394962825 FASTQ R1_L008 unaligned CPTAC3 985fe40f-089d-45d8-a08f-2010ef64767d 826a2ca7942a66d06b94499fcc7137da { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor' } -C3N-02577.RNA-Seq.R2_L002.A C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L002_R2_001.fastq.gz 5696280574 FASTQ R2_L002 unaligned CPTAC3 9b52a605-7ff2-43f7-92a0-b4bd49e01385 e4f3effae5eb690b7f9e751fb34e0284 { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02577.RNA-Seq.R2_L008.T C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L008_R2_001.fastq.gz 3432400019 FASTQ R2_L008 unaligned CPTAC3 60f7a910-a583-4531-9211-1fc3ee5b0509 9536ace9da86108e926b136ad7cb4e3e { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor' } -C3N-02577.RNA-Seq.transcriptome.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 ad0457cb-ed93-4242-9f33-8402550f1f07.rna_seq.transcriptome.gdc_realn.bam 11831509184 BAM transcriptome harmonized CPTAC3 14e640b0-a784-4217-be6a-c401e16c85ff 5bdbd7006151970b242c2f1092bc490e { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02577.RNA-Seq.transcriptome.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 ca37da37-b3d5-4465-a6f7-4ef432529ea3.rna_seq.transcriptome.gdc_realn.bam 7723794426 BAM transcriptome harmonized CPTAC3 6e9769c4-e156-432d-8a17-62ae1a29af69 5df526796168e4a74b96d168dbd928ec { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor' } +C3N-02577.RNA-Seq.chimeric.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 0e237998-5fcb-44f9-9a5a-f2226ba6e61a.rna_seq.chimeric.gdc_realn.bam 72926643 BAM chimeric harmonized CPTAC3 043ba897-26ec-4535-9ce4-64c7988a2ff4 07f9cf2ea4b89729991a821eb0542039 { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02577.RNA-Seq.chimeric.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 db6ac339-e3dc-4123-9716-175ac374dd4d.rna_seq.chimeric.gdc_realn.bam 31607604 BAM chimeric harmonized CPTAC3 b3ecbe02-70aa-47d1-814c-8b6fa806d351 78692c1f05f1fc1d32dc061642dd7e00 { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor' } +C3N-02577.RNA-Seq.genomic.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 0e237998-5fcb-44f9-9a5a-f2226ba6e61a.rna_seq.genomic.gdc_realn.bam 11886817077 BAM genomic harmonized CPTAC3 68ea9622-a6ed-4ebe-befa-bb9c83fa46d1 d62d194f7260a3894426265ec8bad97d { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02577.RNA-Seq.genomic.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 db6ac339-e3dc-4123-9716-175ac374dd4d.rna_seq.genomic.gdc_realn.bam 7116172794 BAM genomic harmonized CPTAC3 cb76ffa7-434b-479d-a33c-df77a207741a c7f070d8838c4fcff6032feb56dfa29f { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor' } +C3N-02577.RNA-Seq.R1_L002.A C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L002_R1_001.fastq.gz 5208304399 FASTQ R1_L002 unaligned CPTAC3 469c3d80-5e8e-45b4-94f6-82310ac0be92 d9c24484c09386460fde6538953d204b { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02577.RNA-Seq.R1_L008.T C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L008_R1_001.fastq.gz 3394962825 FASTQ R1_L008 unaligned CPTAC3 985fe40f-089d-45d8-a08f-2010ef64767d 826a2ca7942a66d06b94499fcc7137da { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02577.RNA-Seq.R2_L002.A C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGATGT_S8_L002_R2_001.fastq.gz 5696280574 FASTQ R2_L002 unaligned CPTAC3 9b52a605-7ff2-43f7-92a0-b4bd49e01385 e4f3effae5eb690b7f9e751fb34e0284 { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02577.RNA-Seq.R2_L008.T C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 190123_UNC31-K00269_0183_BH3L7LBBXY_CCGTCC_S7_L008_R2_001.fastq.gz 3432400019 FASTQ R2_L008 unaligned CPTAC3 60f7a910-a583-4531-9211-1fc3ee5b0509 9536ace9da86108e926b136ad7cb4e3e { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02577.RNA-Seq.transcriptome.A.hg38 C3N-02577 CCRCC RNA-Seq tissue_normal CPT0183570009 0e237998-5fcb-44f9-9a5a-f2226ba6e61a.rna_seq.transcriptome.gdc_realn.bam 13517842281 BAM transcriptome harmonized CPTAC3 18b1a425-6da9-423a-8318-8511c1cc2bd6 76ccf3f6d8342db674803b4050da2593 { 'aliquot_tag': 'ALQ_7680bfa1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02577.RNA-Seq.transcriptome.T.hg38 C3N-02577 CCRCC RNA-Seq tumor CPT0183550010 db6ac339-e3dc-4123-9716-175ac374dd4d.rna_seq.transcriptome.gdc_realn.bam 8846593670 BAM transcriptome harmonized CPTAC3 2894a9e5-9277-4685-8674-daa54a6acad1 03c85d7cab347a63e044ed73934aaedf { 'aliquot_tag': 'ALQ_6c876524', 'gdc_sample_type': 'Primary Tumor' } C3N-02577.WGS.N C3N-02577 CCRCC WGS blood_normal CPT0183610002 CPT0183610002.WholeGenome.RP-1303.bam 136340418473 BAM aligned CPTAC3 b2b4a119-01ad-4e94-b82f-f5270f286611 84b6e50fbbc9b4eb6dbdcc527dab2bf6 { 'aliquot_tag': 'ALQ_e886e127', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02577.WGS.N.hg38 C3N-02577 CCRCC WGS blood_normal CPT0183610002 bd2b4798-27a5-41ef-9acb-4dea43900385_wgs_gdc_realn.bam 196737925175 BAM harmonized CPTAC3 1b04ece1-4e1c-4959-abc7-06efb5d6e218 715f7bb244ea3da58fbc738e436810b0 { 'aliquot_tag': 'ALQ_e886e127', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02577.WGS.T C3N-02577 CCRCC WGS tumor CPT0183550007 CPT0183550007.WholeGenome.RP-1303.bam 116295753995 BAM aligned CPTAC3 3490e0dd-bffb-4f37-879d-9277af0db3e5 edbd49223f5f34ee2f6b472475ed0f67 { 'aliquot_tag': 'ALQ_ebf8c1c6', 'gdc_sample_type': 'Primary Tumor' } @@ -31650,9 +33786,9 @@ C3N-02579.MethArray.Red.T C3N-02579 PDA Methylation Array tumor CPT0207780010 20 C3N-02579.miRNA-Seq.T C3N-02579 PDA miRNA-Seq tumor CPT0207780007 190712_UNC32-K00270_0192_BH7HL3BBXY_CAACTA_S5_L004_R1_001.unaln.bam 232196825 BAM unaligned CPTAC3 27c10aae-3492-414c-8950-4d47d0bd06ae 829529402204f6af78583c468b96e3d9 { 'aliquot_tag': 'ALQ_4087a71f', 'gdc_sample_type': 'Primary Tumor' } C3N-02579.miRNA-Seq.T.hg38 C3N-02579 PDA miRNA-Seq tumor CPT0207780007 9473b7ab-a305-427e-a3eb-f2b0c420a94e_mirnaseq_gdc_realn.bam 262155140 BAM harmonized CPTAC3 d7fbe228-f9f7-4d4e-aecf-ad2eac91c0ed 2e23245a6f89a290656208d61633f879 { 'aliquot_tag': 'ALQ_4087a71f', 'gdc_sample_type': 'Primary Tumor' } C3N-02579.RNA-Seq.chimeric.T.hg38 C3N-02579 PDA RNA-Seq tumor CPT0207780007 b34d4ed5-e255-4932-bacd-d0bdea424120.rna_seq.chimeric.gdc_realn.bam 42931647 BAM chimeric harmonized CPTAC3 9c9132fb-12b4-4abc-9446-99aecae628e2 c3d36ad7b43073fe5967612fc6137b76 { 'aliquot_tag': 'ALQ_4087a71f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02579.RNA-Seq.genomic.T.hg38 C3N-02579 PDA RNA-Seq tumor CPT0207780007 b34d4ed5-e255-4932-bacd-d0bdea424120.rna_seq.genomic.gdc_realn.bam 11341588191 BAM genomic harmonized CPTAC3 e4619341-4b9c-46ca-982c-e21490557203 87f22f4049eb2c6730d6db85567db247 { 'aliquot_tag': 'ALQ_4087a71f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02579.RNA-Seq.R1_L002.T C3N-02579 PDA RNA-Seq tumor CPT0207780007 190621_UNC32-K00270_0185_BH7G72BBXY_TGCGAGAC-CATTGTTG_S6_L002_R1_001.fastq.gz 5587915144 FASTQ R1_L002 unaligned CPTAC3 3d8af186-ccb3-433d-ad9f-ef605c2874e7 2ab99859e391c1850bbfe47022586d42 { 'aliquot_tag': 'ALQ_4087a71f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02579.RNA-Seq.R2_L002.T C3N-02579 PDA RNA-Seq tumor CPT0207780007 190621_UNC32-K00270_0185_BH7G72BBXY_TGCGAGAC-CATTGTTG_S6_L002_R2_001.fastq.gz 6122364074 FASTQ R2_L002 unaligned CPTAC3 f4f1a9fc-0ab4-4cde-b748-4ec572df878f 92ed95a228218edf6e7b2523fbbbd171 { 'aliquot_tag': 'ALQ_4087a71f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02579.RNA-Seq.genomic.T.hg38 C3N-02579 PDA RNA-Seq tumor CPT0207780007 b34d4ed5-e255-4932-bacd-d0bdea424120.rna_seq.genomic.gdc_realn.bam 11341588191 BAM genomic harmonized CPTAC3 6e767c9f-ed50-46cc-b8ab-8d3536218dc1 87f22f4049eb2c6730d6db85567db247 { 'aliquot_tag': 'ALQ_4087a71f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02579.RNA-Seq.R1_L002.T C3N-02579 PDA RNA-Seq tumor CPT0207780007 190621_UNC32-K00270_0185_BH7G72BBXY_TGCGAGAC-CATTGTTG_S6_L002_R1_001.fastq.gz 5587915144 FASTQ R1_L002 unaligned CPTAC3 3d8af186-ccb3-433d-ad9f-ef605c2874e7 2ab99859e391c1850bbfe47022586d42 { 'aliquot_tag': 'ALQ_4087a71f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02579.RNA-Seq.R2_L002.T C3N-02579 PDA RNA-Seq tumor CPT0207780007 190621_UNC32-K00270_0185_BH7G72BBXY_TGCGAGAC-CATTGTTG_S6_L002_R2_001.fastq.gz 6122364074 FASTQ R2_L002 unaligned CPTAC3 f4f1a9fc-0ab4-4cde-b748-4ec572df878f 92ed95a228218edf6e7b2523fbbbd171 { 'aliquot_tag': 'ALQ_4087a71f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-02579.RNA-Seq.transcriptome.T.hg38 C3N-02579 PDA RNA-Seq tumor CPT0207780007 b34d4ed5-e255-4932-bacd-d0bdea424120.rna_seq.transcriptome.gdc_realn.bam 17374155168 BAM transcriptome harmonized CPTAC3 fb35d596-ae31-4ce3-a850-b166887a03be 5da3cc38557ce874d62cabd30927dab0 { 'aliquot_tag': 'ALQ_4087a71f', 'gdc_sample_type': 'Primary Tumor' } C3N-02579.WGS.N C3N-02579 PDA WGS blood_normal CPT0207830002 CPT0207830002.WholeGenome.RP-1303.bam 67247549025 BAM aligned CPTAC3 9ec064ef-83ba-4131-a3c3-c3b1d0710dd4 de72c606c1e330728cd09aa270225958 { 'aliquot_tag': 'ALQ_b66bd054', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02579.WGS.N.hg38 C3N-02579 PDA WGS blood_normal CPT0207830002 c133d775-d52b-4007-966a-36dc5d716e60_wgs_gdc_realn.bam 97820884023 BAM harmonized CPTAC3 62451390-1083-4e93-a89f-1068fb1c7a98 f26c7d7054762d84bbf492e19a1ab734 { 'aliquot_tag': 'ALQ_b66bd054', 'gdc_sample_type': 'Blood Derived Normal' } @@ -31672,12 +33808,12 @@ C3N-02582.miRNA-Seq.T C3N-02582 LUAD miRNA-Seq tumor CPT0147880007 181108_UNC31- C3N-02582.miRNA-Seq.T.hg38 C3N-02582 LUAD miRNA-Seq tumor CPT0147880007 f3cad331-0314-47f8-8b12-efd6ff1bf038_mirnaseq_gdc_realn.bam 236027438 BAM harmonized CPTAC3 a83d5769-4948-465a-9632-d4a49fd48cf3 70fd4819ffbaad86f10d625105f65517 { 'aliquot_tag': 'ALQ_c1627f5', 'gdc_sample_type': 'Primary Tumor' } C3N-02582.RNA-Seq.chimeric.A.hg38 C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 a6568f67-5ac9-4983-bd59-c8763da61a3c.rna_seq.chimeric.gdc_realn.bam 130329099 BAM chimeric harmonized CPTAC3 81b7f0bb-9748-4f5a-8382-bd3d4b9b13c3 8fbfea9dc785fe446c6cb09c8c2bd7c7 { 'aliquot_tag': 'ALQ_803d8f07', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02582.RNA-Seq.chimeric.T.hg38 C3N-02582 LUAD RNA-Seq tumor CPT0147880007 54b791f4-a455-4048-8506-51739ac85fa8.rna_seq.chimeric.gdc_realn.bam 42638454 BAM chimeric harmonized CPTAC3 55c129cf-a71d-4e7a-9d7e-96ab8ae1fb94 1b6d060f7239508579f149c6456bb08f { 'aliquot_tag': 'ALQ_c1627f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02582.RNA-Seq.genomic.A.hg38 C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 a6568f67-5ac9-4983-bd59-c8763da61a3c.rna_seq.genomic.gdc_realn.bam 8311114015 BAM genomic harmonized CPTAC3 e0453ba6-87a4-445a-978c-c6c58217aa8c 80f9109d83cf96931ba7a4752987b7a3 { 'aliquot_tag': 'ALQ_803d8f07', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02582.RNA-Seq.genomic.T.hg38 C3N-02582 LUAD RNA-Seq tumor CPT0147880007 54b791f4-a455-4048-8506-51739ac85fa8.rna_seq.genomic.gdc_realn.bam 8595966239 BAM genomic harmonized CPTAC3 f5faecde-0f49-4cbf-93a0-c7ce9969e719 b52303e62655df747a0319b4e82c09d3 { 'aliquot_tag': 'ALQ_c1627f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02582.RNA-Seq.R1_L002.A C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L002_R1_001.fastq.gz 3859968597 FASTQ R1_L002 unaligned CPTAC3 542479cd-7439-4759-a586-3e0b172f5dbe 361592809227c93f2a17608e951326fb { 'aliquot_tag': 'ALQ_803d8f07', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02582.RNA-Seq.R1_L005.T C3N-02582 LUAD RNA-Seq tumor CPT0147880007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGGCC_S19_L005_R1_001.fastq.gz 4034976977 FASTQ R1_L005 unaligned CPTAC3 0cfc01dc-f4ef-4d6d-ae11-648bebc65525 558438408de3c51b678140207312619c { 'aliquot_tag': 'ALQ_c1627f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02582.RNA-Seq.R2_L002.A C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4208064449 FASTQ R2_L002 unaligned CPTAC3 397192ae-3fb6-42b9-bcd3-f9c7d7296392 ae23c76504fcf432c996c4cce08f038a { 'aliquot_tag': 'ALQ_803d8f07', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02582.RNA-Seq.R2_L005.T C3N-02582 LUAD RNA-Seq tumor CPT0147880007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGGCC_S19_L005_R2_001.fastq.gz 4311719705 FASTQ R2_L005 unaligned CPTAC3 dac94c84-2d46-49ac-897e-9b77e6f83c33 6c3937e173d77a2a559e465c1226e6d1 { 'aliquot_tag': 'ALQ_c1627f5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02582.RNA-Seq.genomic.A.hg38 C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 a6568f67-5ac9-4983-bd59-c8763da61a3c.rna_seq.genomic.gdc_realn.bam 8311114015 BAM genomic harmonized CPTAC3 b1a29ca4-cf76-4953-9ef1-aba109175aab 80f9109d83cf96931ba7a4752987b7a3 { 'aliquot_tag': 'ALQ_803d8f07', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02582.RNA-Seq.genomic.T.hg38 C3N-02582 LUAD RNA-Seq tumor CPT0147880007 54b791f4-a455-4048-8506-51739ac85fa8.rna_seq.genomic.gdc_realn.bam 8595966239 BAM genomic harmonized CPTAC3 a7e9447c-e821-42e1-8e0a-e207a7fb3718 b52303e62655df747a0319b4e82c09d3 { 'aliquot_tag': 'ALQ_c1627f5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02582.RNA-Seq.R1_L002.A C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L002_R1_001.fastq.gz 3859968597 FASTQ R1_L002 unaligned CPTAC3 542479cd-7439-4759-a586-3e0b172f5dbe 361592809227c93f2a17608e951326fb { 'aliquot_tag': 'ALQ_803d8f07', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02582.RNA-Seq.R1_L005.T C3N-02582 LUAD RNA-Seq tumor CPT0147880007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGGCC_S19_L005_R1_001.fastq.gz 4034976977 FASTQ R1_L005 unaligned CPTAC3 0cfc01dc-f4ef-4d6d-ae11-648bebc65525 558438408de3c51b678140207312619c { 'aliquot_tag': 'ALQ_c1627f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02582.RNA-Seq.R2_L002.A C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 180508_UNC31-K00269_0128_BHTY7KBBXX_CGATGT_S6_L002_R2_001.fastq.gz 4208064449 FASTQ R2_L002 unaligned CPTAC3 397192ae-3fb6-42b9-bcd3-f9c7d7296392 ae23c76504fcf432c996c4cce08f038a { 'aliquot_tag': 'ALQ_803d8f07', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02582.RNA-Seq.R2_L005.T C3N-02582 LUAD RNA-Seq tumor CPT0147880007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTGGCC_S19_L005_R2_001.fastq.gz 4311719705 FASTQ R2_L005 unaligned CPTAC3 dac94c84-2d46-49ac-897e-9b77e6f83c33 6c3937e173d77a2a559e465c1226e6d1 { 'aliquot_tag': 'ALQ_c1627f5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-02582.RNA-Seq.transcriptome.A.hg38 C3N-02582 LUAD RNA-Seq tissue_normal CPT0147900006 a6568f67-5ac9-4983-bd59-c8763da61a3c.rna_seq.transcriptome.gdc_realn.bam 9235235325 BAM transcriptome harmonized CPTAC3 459d1fbc-14f4-4a53-ab11-30fc7efbec0c 02bd99a13239751bd85bb0fd61cb58f7 { 'aliquot_tag': 'ALQ_803d8f07', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02582.RNA-Seq.transcriptome.T.hg38 C3N-02582 LUAD RNA-Seq tumor CPT0147880007 54b791f4-a455-4048-8506-51739ac85fa8.rna_seq.transcriptome.gdc_realn.bam 10627630385 BAM transcriptome harmonized CPTAC3 64902423-48a7-4c8a-bdcb-56323abd2b6d fd9ace38369497db8b7c12ad9b3fe0f9 { 'aliquot_tag': 'ALQ_c1627f5', 'gdc_sample_type': 'Primary Tumor' } C3N-02582.WGS.A C3N-02582 LUAD WGS tissue_normal CPT0147900009 CPT0147900009.WholeGenome.RP-1303.bam 63262648540 BAM aligned CPTAC3 2f5d1181-9c3d-4502-ad3d-fc22aacabbe8 2386c73944ddbed54dd73de3b8c8a098 { 'aliquot_tag': 'ALQ_10829296', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -31699,9 +33835,9 @@ C3N-02585.MethArray.Red.T C3N-02585 PDA Methylation Array tumor CPT0183750008 20 C3N-02585.miRNA-Seq.T C3N-02585 PDA miRNA-Seq tumor CPT0183750011 190712_UNC32-K00270_0192_BH7HL3BBXY_TACAGC_S19_L006_R1_001.unaln.bam 229896015 BAM unaligned CPTAC3 26cea4a4-0920-426c-a199-88970ad1f60b 071b185dc6d70a82edf4aefcff6312f9 { 'aliquot_tag': 'ALQ_5648f4b9', 'gdc_sample_type': 'Primary Tumor' } C3N-02585.miRNA-Seq.T.hg38 C3N-02585 PDA miRNA-Seq tumor CPT0183750011 29419d59-fd49-4dd7-b953-1f8880cae940_mirnaseq_gdc_realn.bam 260606156 BAM harmonized CPTAC3 5e829303-fb20-4579-84f5-c653fba64a6d acd40dd6379a0d481f808112fb29679a { 'aliquot_tag': 'ALQ_5648f4b9', 'gdc_sample_type': 'Primary Tumor' } C3N-02585.RNA-Seq.chimeric.T.hg38 C3N-02585 PDA RNA-Seq tumor CPT0183750011 08e00d58-59bc-4aa5-bc04-1210ea2a0743.rna_seq.chimeric.gdc_realn.bam 42132253 BAM chimeric harmonized CPTAC3 775d6dc2-4258-45b2-92de-afd1206ddb90 f769e78b8df8b8e7c75b71e3b5ee6bcd { 'aliquot_tag': 'ALQ_5648f4b9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02585.RNA-Seq.genomic.T.hg38 C3N-02585 PDA RNA-Seq tumor CPT0183750011 08e00d58-59bc-4aa5-bc04-1210ea2a0743.rna_seq.genomic.gdc_realn.bam 10040837642 BAM genomic harmonized CPTAC3 1cf2e832-a750-4835-bc3c-600cbbd4cf89 cc019ea1ce17aaea3dc2ef1bfa41f99a { 'aliquot_tag': 'ALQ_5648f4b9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02585.RNA-Seq.R1_L003.T C3N-02585 PDA RNA-Seq tumor CPT0183750011 190614_UNC32-K00270_0182_BH7777BBXY_AAGATACT-ACTTACAT_S12_L003_R1_001.fastq.gz 4088387883 FASTQ R1_L003 unaligned CPTAC3 914352fc-ea66-48e9-b538-2dab218aa1d5 fe2e0d563127b17684ef5e2b41f886fc { 'aliquot_tag': 'ALQ_5648f4b9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02585.RNA-Seq.R2_L003.T C3N-02585 PDA RNA-Seq tumor CPT0183750011 190614_UNC32-K00270_0182_BH7777BBXY_AAGATACT-ACTTACAT_S12_L003_R2_001.fastq.gz 4445362518 FASTQ R2_L003 unaligned CPTAC3 e048a588-9c8d-452e-9a53-5cdc3629715e b912534d99305ecbe9fb27d493ac3bed { 'aliquot_tag': 'ALQ_5648f4b9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02585.RNA-Seq.genomic.T.hg38 C3N-02585 PDA RNA-Seq tumor CPT0183750011 08e00d58-59bc-4aa5-bc04-1210ea2a0743.rna_seq.genomic.gdc_realn.bam 10040837642 BAM genomic harmonized CPTAC3 47eb9368-0cba-4b15-9624-f03d957034cb cc019ea1ce17aaea3dc2ef1bfa41f99a { 'aliquot_tag': 'ALQ_5648f4b9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02585.RNA-Seq.R1_L003.T C3N-02585 PDA RNA-Seq tumor CPT0183750011 190614_UNC32-K00270_0182_BH7777BBXY_AAGATACT-ACTTACAT_S12_L003_R1_001.fastq.gz 4088387883 FASTQ R1_L003 unaligned CPTAC3 914352fc-ea66-48e9-b538-2dab218aa1d5 fe2e0d563127b17684ef5e2b41f886fc { 'aliquot_tag': 'ALQ_5648f4b9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02585.RNA-Seq.R2_L003.T C3N-02585 PDA RNA-Seq tumor CPT0183750011 190614_UNC32-K00270_0182_BH7777BBXY_AAGATACT-ACTTACAT_S12_L003_R2_001.fastq.gz 4445362518 FASTQ R2_L003 unaligned CPTAC3 e048a588-9c8d-452e-9a53-5cdc3629715e b912534d99305ecbe9fb27d493ac3bed { 'aliquot_tag': 'ALQ_5648f4b9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-02585.RNA-Seq.transcriptome.T.hg38 C3N-02585 PDA RNA-Seq tumor CPT0183750011 08e00d58-59bc-4aa5-bc04-1210ea2a0743.rna_seq.transcriptome.gdc_realn.bam 10668839475 BAM transcriptome harmonized CPTAC3 134e7865-4c79-4eb7-870d-8008b3d2e34c 8bdaf1c294300125e6d6e1d854c571cb { 'aliquot_tag': 'ALQ_5648f4b9', 'gdc_sample_type': 'Primary Tumor' } C3N-02585.WGS.N C3N-02585 PDA WGS blood_normal CPT0183810002 CPT0183810002.WholeGenome.RP-1303.bam 77667876827 BAM aligned CPTAC3 129b49e0-afab-47d6-994c-dd74db4242a1 72da157de37adc3ede58513a85d67c24 { 'aliquot_tag': 'ALQ_d28c8057', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02585.WGS.N.hg38 C3N-02585 PDA WGS blood_normal CPT0183810002 2d6b05e6-7e99-4cfa-925f-2b617bb26f2b_wgs_gdc_realn.bam 114473097001 BAM harmonized CPTAC3 432c4b20-e467-48f5-bbc2-352c7f2c0f37 1afb499559a3d0ce5c4eac564ada9fb2 { 'aliquot_tag': 'ALQ_d28c8057', 'gdc_sample_type': 'Blood Derived Normal' } @@ -31723,12 +33859,12 @@ C3N-02586.miRNA-Seq.T C3N-02586 LUAD miRNA-Seq tumor CPT0147980007 181108_UNC31- C3N-02586.miRNA-Seq.T.hg38 C3N-02586 LUAD miRNA-Seq tumor CPT0147980007 e0b26f28-1e3d-427c-94aa-8e63c611bea1_mirnaseq_gdc_realn.bam 269092527 BAM harmonized CPTAC3 0bcf0b4e-2980-443e-9ccf-09b319497a6a dc1308690bd3b8f5daa3c5e9b88c6c7a { 'aliquot_tag': 'ALQ_c74af450', 'gdc_sample_type': 'Primary Tumor' } C3N-02586.RNA-Seq.chimeric.A.hg38 C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 049b209c-4afd-4caa-a5cc-ec1299e87ed5.rna_seq.chimeric.gdc_realn.bam 176757432 BAM chimeric harmonized CPTAC3 ab2edff9-0def-48cd-8b94-196796cb8ccd 19a268360138b2aafbf0a2886841139e { 'aliquot_tag': 'ALQ_517aae26', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02586.RNA-Seq.chimeric.T.hg38 C3N-02586 LUAD RNA-Seq tumor CPT0147980007 83c78adc-b912-4872-b291-c438cfe99d1c.rna_seq.chimeric.gdc_realn.bam 35660422 BAM chimeric harmonized CPTAC3 d312252a-46cb-4e7b-a837-f61fafdaab06 dbc8fc4e9a524a8c39135742501b8540 { 'aliquot_tag': 'ALQ_c74af450', 'gdc_sample_type': 'Primary Tumor' } -C3N-02586.RNA-Seq.genomic.A.hg38 C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 049b209c-4afd-4caa-a5cc-ec1299e87ed5.rna_seq.genomic.gdc_realn.bam 10306998518 BAM genomic harmonized CPTAC3 f00724ff-9c55-47c1-860d-8ce3bc3a433c fc1cd7ae46c989e708ac04e80f37777e { 'aliquot_tag': 'ALQ_517aae26', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02586.RNA-Seq.genomic.T.hg38 C3N-02586 LUAD RNA-Seq tumor CPT0147980007 83c78adc-b912-4872-b291-c438cfe99d1c.rna_seq.genomic.gdc_realn.bam 8787308285 BAM genomic harmonized CPTAC3 6065754d-38f8-4a61-85ed-dfcb5e482a78 2b7bc85b054efd77aea692bfb3998be5 { 'aliquot_tag': 'ALQ_c74af450', 'gdc_sample_type': 'Primary Tumor' } -C3N-02586.RNA-Seq.R1_L001.A C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 180801_UNC31-K00269_0142_AHW3HKBBXX_CGTACG_S2_L001_R1_001.fastq.gz 3920057396 FASTQ R1_L001 unaligned CPTAC3 86c667ea-54da-4e8e-9f28-ffda103d0938 0e1a6c1000a0e97b842b82825b7aa027 { 'aliquot_tag': 'ALQ_517aae26', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02586.RNA-Seq.R1_L006.T C3N-02586 LUAD RNA-Seq tumor CPT0147980007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTTTCG_S22_L006_R1_001.fastq.gz 3926303770 FASTQ R1_L006 unaligned CPTAC3 694ee77f-462d-4e97-8391-eedf2593791b 66fa5faad7e7795d6fe48faac0dc152b { 'aliquot_tag': 'ALQ_c74af450', 'gdc_sample_type': 'Primary Tumor' } -C3N-02586.RNA-Seq.R2_L001.A C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 180801_UNC31-K00269_0142_AHW3HKBBXX_CGTACG_S2_L001_R2_001.fastq.gz 4292573803 FASTQ R2_L001 unaligned CPTAC3 d54a8a19-632b-46c6-8d98-35a1634e8c03 b7ede63715625618e6fe1997d360f559 { 'aliquot_tag': 'ALQ_517aae26', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02586.RNA-Seq.R2_L006.T C3N-02586 LUAD RNA-Seq tumor CPT0147980007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTTTCG_S22_L006_R2_001.fastq.gz 4212407561 FASTQ R2_L006 unaligned CPTAC3 cd8b39a5-1ef2-4304-ad2a-bc398a537daf 335a40cd8c0ab8f4cbf9d2ae32900509 { 'aliquot_tag': 'ALQ_c74af450', 'gdc_sample_type': 'Primary Tumor' } +C3N-02586.RNA-Seq.genomic.A.hg38 C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 049b209c-4afd-4caa-a5cc-ec1299e87ed5.rna_seq.genomic.gdc_realn.bam 10306998518 BAM genomic harmonized CPTAC3 44c94cd3-5b17-40ba-96a2-92d966d1a321 fc1cd7ae46c989e708ac04e80f37777e { 'aliquot_tag': 'ALQ_517aae26', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02586.RNA-Seq.genomic.T.hg38 C3N-02586 LUAD RNA-Seq tumor CPT0147980007 83c78adc-b912-4872-b291-c438cfe99d1c.rna_seq.genomic.gdc_realn.bam 8787308285 BAM genomic harmonized CPTAC3 97110172-35bf-4b2b-8f64-887be3bec696 2b7bc85b054efd77aea692bfb3998be5 { 'aliquot_tag': 'ALQ_c74af450', 'gdc_sample_type': 'Primary Tumor' } +C3N-02586.RNA-Seq.R1_L001.A C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 180801_UNC31-K00269_0142_AHW3HKBBXX_CGTACG_S2_L001_R1_001.fastq.gz 3920057396 FASTQ R1_L001 unaligned CPTAC3 86c667ea-54da-4e8e-9f28-ffda103d0938 0e1a6c1000a0e97b842b82825b7aa027 { 'aliquot_tag': 'ALQ_517aae26', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-02586.RNA-Seq.R1_L006.T C3N-02586 LUAD RNA-Seq tumor CPT0147980007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTTTCG_S22_L006_R1_001.fastq.gz 3926303770 FASTQ R1_L006 unaligned CPTAC3 694ee77f-462d-4e97-8391-eedf2593791b 66fa5faad7e7795d6fe48faac0dc152b { 'aliquot_tag': 'ALQ_c74af450', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02586.RNA-Seq.R2_L001.A C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 180801_UNC31-K00269_0142_AHW3HKBBXX_CGTACG_S2_L001_R2_001.fastq.gz 4292573803 FASTQ R2_L001 unaligned CPTAC3 d54a8a19-632b-46c6-8d98-35a1634e8c03 b7ede63715625618e6fe1997d360f559 { 'aliquot_tag': 'ALQ_517aae26', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-02586.RNA-Seq.R2_L006.T C3N-02586 LUAD RNA-Seq tumor CPT0147980007 180502_UNC32-K00270_0094_BHTVLMBBXX_GTTTCG_S22_L006_R2_001.fastq.gz 4212407561 FASTQ R2_L006 unaligned CPTAC3 cd8b39a5-1ef2-4304-ad2a-bc398a537daf 335a40cd8c0ab8f4cbf9d2ae32900509 { 'aliquot_tag': 'ALQ_c74af450', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-02586.RNA-Seq.transcriptome.A.hg38 C3N-02586 LUAD RNA-Seq tissue_normal CPT0148000006 049b209c-4afd-4caa-a5cc-ec1299e87ed5.rna_seq.transcriptome.gdc_realn.bam 9197470229 BAM transcriptome harmonized CPTAC3 6d399c70-7985-4f4b-9f43-5751c3984cbe 93176a13abab115218827f008004db4e { 'aliquot_tag': 'ALQ_517aae26', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02586.RNA-Seq.transcriptome.T.hg38 C3N-02586 LUAD RNA-Seq tumor CPT0147980007 83c78adc-b912-4872-b291-c438cfe99d1c.rna_seq.transcriptome.gdc_realn.bam 10193310393 BAM transcriptome harmonized CPTAC3 4a407c19-a899-4d3b-9f41-f9028b3e0dde 2201da3f5ff4384da37049678ed90a8f { 'aliquot_tag': 'ALQ_c74af450', 'gdc_sample_type': 'Primary Tumor' } C3N-02586.Targeted.T C3N-02586 LUAD Targeted Sequencing tumor CPT0147980010 CPT0147980010.CustomSelection.RP-1303.PDO-18786.bam 4733831323 BAM aligned CPTAC3 b333a01f-8a99-4386-91e6-11c5d4c955ae 70df66c89d3fb1b27ba1bbd74ffa812d { 'aliquot_tag': 'ALQ_403550b2', 'gdc_sample_type': 'Primary Tumor' } @@ -31755,12 +33891,12 @@ C3N-02587.miRNA-Seq.T C3N-02587 LUAD miRNA-Seq tumor CPT0148080007 181108_UNC31- C3N-02587.miRNA-Seq.T.hg38 C3N-02587 LUAD miRNA-Seq tumor CPT0148080007 658dcb94-e542-4ea6-bbd4-7205d980ec4b_mirnaseq_gdc_realn.bam 240605441 BAM harmonized CPTAC3 54603d13-bc13-44be-b921-92b554061215 314f9fc080eb9c32e0df65691f4c5474 { 'aliquot_tag': 'ALQ_160dd571', 'gdc_sample_type': 'Primary Tumor' } C3N-02587.RNA-Seq.chimeric.A.hg38 C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 3e0947dd-e95f-4806-8604-25e89e33e185.rna_seq.chimeric.gdc_realn.bam 107885146 BAM chimeric harmonized CPTAC3 b345786d-aea1-4bdf-a44c-b9a913962691 14f24d52874280e8bd035e1a1547dd4e { 'aliquot_tag': 'ALQ_9a267d83', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02587.RNA-Seq.chimeric.T.hg38 C3N-02587 LUAD RNA-Seq tumor CPT0148080007 57c844d4-c8cf-42ec-9fd9-6d84be220fe6.rna_seq.chimeric.gdc_realn.bam 30839333 BAM chimeric harmonized CPTAC3 5c5978dd-9d69-42b6-be26-5fa00152f130 8b0f3dc824680e92b5eb4c5c0af79fd1 { 'aliquot_tag': 'ALQ_160dd571', 'gdc_sample_type': 'Primary Tumor' } -C3N-02587.RNA-Seq.genomic.A.hg38 C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 3e0947dd-e95f-4806-8604-25e89e33e185.rna_seq.genomic.gdc_realn.bam 9226362658 BAM genomic harmonized CPTAC3 3767e929-4416-4eed-99c1-f8fb09921d0a 54bb53ef92daa1f5f810b6dfb8d2480a { 'aliquot_tag': 'ALQ_9a267d83', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02587.RNA-Seq.genomic.T.hg38 C3N-02587 LUAD RNA-Seq tumor CPT0148080007 57c844d4-c8cf-42ec-9fd9-6d84be220fe6.rna_seq.genomic.gdc_realn.bam 8723142673 BAM genomic harmonized CPTAC3 ca284c1f-efa8-45c8-9352-b3d22f65403d 98f3c625b31b45c58102ba4712b35798 { 'aliquot_tag': 'ALQ_160dd571', 'gdc_sample_type': 'Primary Tumor' } -C3N-02587.RNA-Seq.R1_L002.A C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L002_R1_001.fastq.gz 4456773186 FASTQ R1_L002 unaligned CPTAC3 1db09be6-8c61-4200-bb2d-045c3e4ed414 e4a152dc5c3ff0ed73cb155c02b265cf { 'aliquot_tag': 'ALQ_9a267d83', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02587.RNA-Seq.R1_L006.T C3N-02587 LUAD RNA-Seq tumor CPT0148080007 180502_UNC32-K00270_0094_BHTVLMBBXX_CGTACG_S21_L006_R1_001.fastq.gz 3836963306 FASTQ R1_L006 unaligned CPTAC3 97b059c7-dd4a-4115-9781-ade8fb892063 d249dd1d0e69f24144703d0d542c7efc { 'aliquot_tag': 'ALQ_160dd571', 'gdc_sample_type': 'Primary Tumor' } -C3N-02587.RNA-Seq.R2_L002.A C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4754113558 FASTQ R2_L002 unaligned CPTAC3 d4744049-4d5c-4345-8438-7d75f664df0e d02460e731bc09072102fc784acbb47e { 'aliquot_tag': 'ALQ_9a267d83', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02587.RNA-Seq.R2_L006.T C3N-02587 LUAD RNA-Seq tumor CPT0148080007 180502_UNC32-K00270_0094_BHTVLMBBXX_CGTACG_S21_L006_R2_001.fastq.gz 4148435363 FASTQ R2_L006 unaligned CPTAC3 d94ec4df-9457-4d44-a101-a66fd2ec0e24 af9b7a7448208ce86d01e1fb56aad2ef { 'aliquot_tag': 'ALQ_160dd571', 'gdc_sample_type': 'Primary Tumor' } +C3N-02587.RNA-Seq.genomic.A.hg38 C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 3e0947dd-e95f-4806-8604-25e89e33e185.rna_seq.genomic.gdc_realn.bam 9226362658 BAM genomic harmonized CPTAC3 16801bba-dedd-4181-b71a-54f01999321b 54bb53ef92daa1f5f810b6dfb8d2480a { 'aliquot_tag': 'ALQ_9a267d83', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02587.RNA-Seq.genomic.T.hg38 C3N-02587 LUAD RNA-Seq tumor CPT0148080007 57c844d4-c8cf-42ec-9fd9-6d84be220fe6.rna_seq.genomic.gdc_realn.bam 8723142673 BAM genomic harmonized CPTAC3 c2c61cd8-e2f3-489e-9971-c42a9fa59ad3 98f3c625b31b45c58102ba4712b35798 { 'aliquot_tag': 'ALQ_160dd571', 'gdc_sample_type': 'Primary Tumor' } +C3N-02587.RNA-Seq.R1_L002.A C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L002_R1_001.fastq.gz 4456773186 FASTQ R1_L002 unaligned CPTAC3 1db09be6-8c61-4200-bb2d-045c3e4ed414 e4a152dc5c3ff0ed73cb155c02b265cf { 'aliquot_tag': 'ALQ_9a267d83', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02587.RNA-Seq.R1_L006.T C3N-02587 LUAD RNA-Seq tumor CPT0148080007 180502_UNC32-K00270_0094_BHTVLMBBXX_CGTACG_S21_L006_R1_001.fastq.gz 3836963306 FASTQ R1_L006 unaligned CPTAC3 97b059c7-dd4a-4115-9781-ade8fb892063 d249dd1d0e69f24144703d0d542c7efc { 'aliquot_tag': 'ALQ_160dd571', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02587.RNA-Seq.R2_L002.A C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 180508_UNC31-K00269_0128_BHTY7KBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4754113558 FASTQ R2_L002 unaligned CPTAC3 d4744049-4d5c-4345-8438-7d75f664df0e d02460e731bc09072102fc784acbb47e { 'aliquot_tag': 'ALQ_9a267d83', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02587.RNA-Seq.R2_L006.T C3N-02587 LUAD RNA-Seq tumor CPT0148080007 180502_UNC32-K00270_0094_BHTVLMBBXX_CGTACG_S21_L006_R2_001.fastq.gz 4148435363 FASTQ R2_L006 unaligned CPTAC3 d94ec4df-9457-4d44-a101-a66fd2ec0e24 af9b7a7448208ce86d01e1fb56aad2ef { 'aliquot_tag': 'ALQ_160dd571', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-02587.RNA-Seq.transcriptome.A.hg38 C3N-02587 LUAD RNA-Seq tissue_normal CPT0148100006 3e0947dd-e95f-4806-8604-25e89e33e185.rna_seq.transcriptome.gdc_realn.bam 10615441820 BAM transcriptome harmonized CPTAC3 c335d989-b7aa-47ac-b837-11efc3072e59 9fe52c3dd9839ade97f2a34a473007b8 { 'aliquot_tag': 'ALQ_9a267d83', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02587.RNA-Seq.transcriptome.T.hg38 C3N-02587 LUAD RNA-Seq tumor CPT0148080007 57c844d4-c8cf-42ec-9fd9-6d84be220fe6.rna_seq.transcriptome.gdc_realn.bam 11665338642 BAM transcriptome harmonized CPTAC3 4d2c20c2-80d7-41dd-899e-f454093146b7 d44d1e81b175fac654d4ed72c5253e61 { 'aliquot_tag': 'ALQ_160dd571', 'gdc_sample_type': 'Primary Tumor' } C3N-02587.Targeted.T C3N-02587 LUAD Targeted Sequencing tumor CPT0148080010 CPT0148080010.CustomSelection.RP-1303.PDO-18786.bam 5083127666 BAM aligned CPTAC3 e52d6091-8366-469e-9f8b-e7253b46499e dccf1ce91c96f1498a2808f47ed1308a { 'aliquot_tag': 'ALQ_91727193', 'gdc_sample_type': 'Primary Tumor' } @@ -31788,11 +33924,11 @@ C3N-02588.miRNA-Seq.T.hg38 C3N-02588 LUAD miRNA-Seq tumor CPT0148180007 1024214a C3N-02588.RNA-Seq.chimeric.A.hg38 C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 05bff266-d00c-4c12-bd00-149655f06e7f.rna_seq.chimeric.gdc_realn.bam 163488880 BAM chimeric harmonized CPTAC3 f85d6c35-879d-4f31-8296-7c356130c993 9a49a19e7c86cea08c34c5f5d86577b7 { 'aliquot_tag': 'ALQ_1cb20f2d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02588.RNA-Seq.chimeric.T.hg38 C3N-02588 LUAD RNA-Seq tumor CPT0148180007 b07ea5e9-1230-4234-bdc6-ae17aa213aa7.rna_seq.chimeric.gdc_realn.bam 40883264 BAM chimeric harmonized CPTAC3 91557d4f-2dbd-482d-b7ee-326a552cd707 c33e0b15d6ea571e4c99115ca162c8a0 { 'aliquot_tag': 'ALQ_dd5106d4', 'gdc_sample_type': 'Primary Tumor' } C3N-02588.RNA-Seq.genomic.A.hg38 C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 05bff266-d00c-4c12-bd00-149655f06e7f.rna_seq.genomic.gdc_realn.bam 7749368022 BAM genomic harmonized CPTAC3 9c35b891-4d83-45a8-9039-db0884a5c4eb 05ee58ed7292c354d2e21871c2f981df { 'aliquot_tag': 'ALQ_1cb20f2d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02588.RNA-Seq.genomic.T.hg38 C3N-02588 LUAD RNA-Seq tumor CPT0148180007 b07ea5e9-1230-4234-bdc6-ae17aa213aa7.rna_seq.genomic.gdc_realn.bam 9767832730 BAM genomic harmonized CPTAC3 4eb52563-1900-4e69-883d-3274cc98555c 20ef6818ec13a0c55fca6015ad6abc79 { 'aliquot_tag': 'ALQ_dd5106d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02588.RNA-Seq.R1_L002.A C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3807304647 FASTQ R1_L002 unaligned CPTAC3 5218ecfd-40b8-4a1a-b114-0e9713e3758d 66b3eb6f7bd3032de62825954abca342 { 'aliquot_tag': 'ALQ_1cb20f2d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02588.RNA-Seq.R1_L006.T C3N-02588 LUAD RNA-Seq tumor CPT0148180007 180502_UNC32-K00270_0094_BHTVLMBBXX_GAGTGG_S24_L006_R1_001.fastq.gz 4528492951 FASTQ R1_L006 unaligned CPTAC3 b6b18c65-7d64-413e-8384-ab62d44284eb 4d1e1adf20ce804e1e9b1fb442da7397 { 'aliquot_tag': 'ALQ_dd5106d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02588.RNA-Seq.R2_L002.A C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 4125134372 FASTQ R2_L002 unaligned CPTAC3 7647a638-17b5-4584-8f13-02dcdb31143b 03efdae0bfbe6b419de90e8cca57f42a { 'aliquot_tag': 'ALQ_1cb20f2d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02588.RNA-Seq.R2_L006.T C3N-02588 LUAD RNA-Seq tumor CPT0148180007 180502_UNC32-K00270_0094_BHTVLMBBXX_GAGTGG_S24_L006_R2_001.fastq.gz 4794829253 FASTQ R2_L006 unaligned CPTAC3 3d3d4104-07ff-499d-b7c5-c67f354d8c3c 16d4065594a3b3d3c2784c847dc8a1ba { 'aliquot_tag': 'ALQ_dd5106d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02588.RNA-Seq.genomic.T.hg38 C3N-02588 LUAD RNA-Seq tumor CPT0148180007 b07ea5e9-1230-4234-bdc6-ae17aa213aa7.rna_seq.genomic.gdc_realn.bam 9767832730 BAM genomic harmonized CPTAC3 65ff20f6-804d-41d2-ba39-7664feb0ba39 20ef6818ec13a0c55fca6015ad6abc79 { 'aliquot_tag': 'ALQ_dd5106d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02588.RNA-Seq.R1_L002.A C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L002_R1_001.fastq.gz 3807304647 FASTQ R1_L002 unaligned CPTAC3 5218ecfd-40b8-4a1a-b114-0e9713e3758d 66b3eb6f7bd3032de62825954abca342 { 'aliquot_tag': 'ALQ_1cb20f2d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02588.RNA-Seq.R1_L006.T C3N-02588 LUAD RNA-Seq tumor CPT0148180007 180502_UNC32-K00270_0094_BHTVLMBBXX_GAGTGG_S24_L006_R1_001.fastq.gz 4528492951 FASTQ R1_L006 unaligned CPTAC3 b6b18c65-7d64-413e-8384-ab62d44284eb 4d1e1adf20ce804e1e9b1fb442da7397 { 'aliquot_tag': 'ALQ_dd5106d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02588.RNA-Seq.R2_L002.A C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 180508_UNC31-K00269_0128_BHTY7KBBXX_ACAGTG_S7_L002_R2_001.fastq.gz 4125134372 FASTQ R2_L002 unaligned CPTAC3 7647a638-17b5-4584-8f13-02dcdb31143b 03efdae0bfbe6b419de90e8cca57f42a { 'aliquot_tag': 'ALQ_1cb20f2d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02588.RNA-Seq.R2_L006.T C3N-02588 LUAD RNA-Seq tumor CPT0148180007 180502_UNC32-K00270_0094_BHTVLMBBXX_GAGTGG_S24_L006_R2_001.fastq.gz 4794829253 FASTQ R2_L006 unaligned CPTAC3 3d3d4104-07ff-499d-b7c5-c67f354d8c3c 16d4065594a3b3d3c2784c847dc8a1ba { 'aliquot_tag': 'ALQ_dd5106d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-02588.RNA-Seq.transcriptome.A.hg38 C3N-02588 LUAD RNA-Seq tissue_normal CPT0148200006 05bff266-d00c-4c12-bd00-149655f06e7f.rna_seq.transcriptome.gdc_realn.bam 8514889045 BAM transcriptome harmonized CPTAC3 3ed10dc3-f23c-475a-8f48-b4fe220a9b09 0daef698e2416d288cbef1d8a753541b { 'aliquot_tag': 'ALQ_1cb20f2d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02588.RNA-Seq.transcriptome.T.hg38 C3N-02588 LUAD RNA-Seq tumor CPT0148180007 b07ea5e9-1230-4234-bdc6-ae17aa213aa7.rna_seq.transcriptome.gdc_realn.bam 12440818738 BAM transcriptome harmonized CPTAC3 a2c0358c-a948-4a8c-851b-65fddedb2054 d32e7b100438e11b9eecbba2026b029e { 'aliquot_tag': 'ALQ_dd5106d4', 'gdc_sample_type': 'Primary Tumor' } C3N-02588.Targeted.T C3N-02588 LUAD Targeted Sequencing tumor CPT0148180010 CPT0148180010.CustomSelection.RP-1303.PDO-18786.bam 4664758335 BAM aligned CPTAC3 d7806929-4953-4442-a8c3-c5d8a4645f30 77037f439f4ea16bb636a3d1568327b6 { 'aliquot_tag': 'ALQ_5a2ea236', 'gdc_sample_type': 'Primary Tumor' } @@ -31819,12 +33955,12 @@ C3N-02589.miRNA-Seq.T C3N-02589 PDA miRNA-Seq tumor CPT0162660010 190712_UNC32-K C3N-02589.miRNA-Seq.T.hg38 C3N-02589 PDA miRNA-Seq tumor CPT0162660010 75988f97-542f-410e-89d4-df85dad63b2d_mirnaseq_gdc_realn.bam 246832781 BAM harmonized CPTAC3 f13c3a88-cc3d-4195-9971-48ce3cf10a1e 3ef01f4f2e8ec9b13586fd209e4253c4 { 'aliquot_tag': 'ALQ_1e4e74dc', 'gdc_sample_type': 'Primary Tumor' } C3N-02589.RNA-Seq.chimeric.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 550c8c20-7db8-4611-a353-2ee4a395c27d.rna_seq.chimeric.gdc_realn.bam 47193877 BAM chimeric harmonized CPTAC3 0d2a1787-37d4-4c39-92a4-030e61ee95d1 4f3177718a1485721709388f23a9a73b { 'aliquot_tag': 'ALQ_232e5d6c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02589.RNA-Seq.chimeric.T.hg38 C3N-02589 PDA RNA-Seq tumor CPT0162660010 4f8a2b3c-1456-43f1-949b-4dec6b625e66.rna_seq.chimeric.gdc_realn.bam 37343373 BAM chimeric harmonized CPTAC3 694847b6-db72-4589-91bf-424a29607f14 7cb2499325bce53735fd233f7d521ace { 'aliquot_tag': 'ALQ_1e4e74dc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02589.RNA-Seq.genomic.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 550c8c20-7db8-4611-a353-2ee4a395c27d.rna_seq.genomic.gdc_realn.bam 10123471423 BAM genomic harmonized CPTAC3 c97bd961-5937-4b81-958d-3f6f7eabd25f f2bcec8c98eeb71a8118ede073d02a71 { 'aliquot_tag': 'ALQ_232e5d6c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02589.RNA-Seq.genomic.T.hg38 C3N-02589 PDA RNA-Seq tumor CPT0162660010 4f8a2b3c-1456-43f1-949b-4dec6b625e66.rna_seq.genomic.gdc_realn.bam 8662347769 BAM genomic harmonized CPTAC3 14807820-cbb9-43cf-bd2e-3dadcceeb778 85377c692f935c66337fe730b76a3ec2 { 'aliquot_tag': 'ALQ_1e4e74dc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02589.RNA-Seq.R1_L005.T C3N-02589 PDA RNA-Seq tumor CPT0162660010 190621_UNC32-K00270_0185_BH7G72BBXY_ACACTAAG-ATCCATAT_S18_L005_R1_001.fastq.gz 4244742143 FASTQ R1_L005 unaligned CPTAC3 3f1d0dc3-1de5-42d0-b534-8320064d881f 24a365d73dcf17c110fdf221eec3a54e { 'aliquot_tag': 'ALQ_1e4e74dc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02589.RNA-Seq.R1_L006.A C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 190702_UNC32-K00270_0188_BH7CLJBBXY_ATGAGGCC-GTTAATTG_S23_L006_R1_001.fastq.gz 4518545951 FASTQ R1_L006 unaligned CPTAC3 6cab4697-ccb1-4c67-8e6d-bbe7907f0ef6 9c33fd28acbd07023f59d9f4375b6438 { 'aliquot_tag': 'ALQ_232e5d6c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02589.RNA-Seq.R2_L005.T C3N-02589 PDA RNA-Seq tumor CPT0162660010 190621_UNC32-K00270_0185_BH7G72BBXY_ACACTAAG-ATCCATAT_S18_L005_R2_001.fastq.gz 4545951139 FASTQ R2_L005 unaligned CPTAC3 a5c04d86-8a09-471f-8956-11e6c0c3df8c 63f0a4249c1eb914df02ce0922cba14f { 'aliquot_tag': 'ALQ_1e4e74dc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02589.RNA-Seq.R2_L006.A C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 190702_UNC32-K00270_0188_BH7CLJBBXY_ATGAGGCC-GTTAATTG_S23_L006_R2_001.fastq.gz 5245948103 FASTQ R2_L006 unaligned CPTAC3 76024d1f-9895-461b-8c5c-5e28dd523d4d 497443fd322de1c2c5c44f8effc6b158 { 'aliquot_tag': 'ALQ_232e5d6c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02589.RNA-Seq.genomic.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 550c8c20-7db8-4611-a353-2ee4a395c27d.rna_seq.genomic.gdc_realn.bam 10123471423 BAM genomic harmonized CPTAC3 8cc2dd3e-b5eb-4a81-bfa3-bf11f7437c1e f2bcec8c98eeb71a8118ede073d02a71 { 'aliquot_tag': 'ALQ_232e5d6c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02589.RNA-Seq.genomic.T.hg38 C3N-02589 PDA RNA-Seq tumor CPT0162660010 4f8a2b3c-1456-43f1-949b-4dec6b625e66.rna_seq.genomic.gdc_realn.bam 8662347769 BAM genomic harmonized CPTAC3 26fc9d10-47aa-4675-828b-6c416039bfd7 85377c692f935c66337fe730b76a3ec2 { 'aliquot_tag': 'ALQ_1e4e74dc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02589.RNA-Seq.R1_L005.T C3N-02589 PDA RNA-Seq tumor CPT0162660010 190621_UNC32-K00270_0185_BH7G72BBXY_ACACTAAG-ATCCATAT_S18_L005_R1_001.fastq.gz 4244742143 FASTQ R1_L005 unaligned CPTAC3 3f1d0dc3-1de5-42d0-b534-8320064d881f 24a365d73dcf17c110fdf221eec3a54e { 'aliquot_tag': 'ALQ_1e4e74dc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02589.RNA-Seq.R1_L006.A C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 190702_UNC32-K00270_0188_BH7CLJBBXY_ATGAGGCC-GTTAATTG_S23_L006_R1_001.fastq.gz 4518545951 FASTQ R1_L006 unaligned CPTAC3 6cab4697-ccb1-4c67-8e6d-bbe7907f0ef6 9c33fd28acbd07023f59d9f4375b6438 { 'aliquot_tag': 'ALQ_232e5d6c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02589.RNA-Seq.R2_L005.T C3N-02589 PDA RNA-Seq tumor CPT0162660010 190621_UNC32-K00270_0185_BH7G72BBXY_ACACTAAG-ATCCATAT_S18_L005_R2_001.fastq.gz 4545951139 FASTQ R2_L005 unaligned CPTAC3 a5c04d86-8a09-471f-8956-11e6c0c3df8c 63f0a4249c1eb914df02ce0922cba14f { 'aliquot_tag': 'ALQ_1e4e74dc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02589.RNA-Seq.R2_L006.A C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 190702_UNC32-K00270_0188_BH7CLJBBXY_ATGAGGCC-GTTAATTG_S23_L006_R2_001.fastq.gz 5245948103 FASTQ R2_L006 unaligned CPTAC3 76024d1f-9895-461b-8c5c-5e28dd523d4d 497443fd322de1c2c5c44f8effc6b158 { 'aliquot_tag': 'ALQ_232e5d6c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-02589.RNA-Seq.transcriptome.A.hg38 C3N-02589 PDA RNA-Seq tissue_normal CPT0162670010 550c8c20-7db8-4611-a353-2ee4a395c27d.rna_seq.transcriptome.gdc_realn.bam 12618553534 BAM transcriptome harmonized CPTAC3 032bb4b5-9ff3-4d6d-999d-d44852a5c9f2 bd245a9d7a0e12b9d985f0c51515c9ef { 'aliquot_tag': 'ALQ_232e5d6c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02589.RNA-Seq.transcriptome.T.hg38 C3N-02589 PDA RNA-Seq tumor CPT0162660010 4f8a2b3c-1456-43f1-949b-4dec6b625e66.rna_seq.transcriptome.gdc_realn.bam 12033691608 BAM transcriptome harmonized CPTAC3 fa93ef83-a52a-4ed4-aba6-3105777b583c 69c3a2e00ae4e93cfbf246c024f7286a { 'aliquot_tag': 'ALQ_1e4e74dc', 'gdc_sample_type': 'Primary Tumor' } C3N-02589.WGS.N C3N-02589 PDA WGS blood_normal CPT0162700002 CPT0162700002.WholeGenome.RP-1303.bam 74920388053 BAM aligned CPTAC3 49e4f876-6f21-458b-b8b4-2f8f719c1377 c7b026447eb4d83661da9c72e053c3d6 { 'aliquot_tag': 'ALQ_ad4702b4', 'gdc_sample_type': 'Blood Derived Normal' } @@ -31849,11 +33985,11 @@ C3N-02590.DUP_9f765ac0.WXS.T C3N-02590 PDA WXS tumor CPT0187590026 CPT0187590026 C3N-02590.DUP_9f765ac0.WXS.T.hg38 C3N-02590 PDA WXS tumor CPT0187590026 aa022931-97a5-4a8f-89f0-6acbd1d6fc6c_wxs_gdc_realn.bam 71035417727 BAM harmonized CPTAC3 28c76065-6382-4508-b859-3260f21669b5 57c9b435adbb8c81134a1774c2138cfc { 'aliquot_tag': 'DUP_9f765ac0', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA Pilot - bulk-derived DNA' } C3N-02590.miRNA-Seq.T C3N-02590 PDA miRNA-Seq tumor CPT0187590016 190108_UNC31-K00269_0176_AHYGLVBBXX_GCCAAT_S6_L002_R1_001.unaln.bam 225584374 BAM unaligned CPTAC3 4975d966-ffab-4a24-a2ea-e7f67761bde0 1493104f346b5a308274ab660129bf3f { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor' } C3N-02590.miRNA-Seq.T.hg38 C3N-02590 PDA miRNA-Seq tumor CPT0187590016 67b9fc7b-0477-494e-a59c-e3e905bb245a_mirnaseq_gdc_realn.bam 253829316 BAM harmonized CPTAC3 e5ae3251-d1d6-4ca4-929f-f8bf263ab367 9452c50eb12c6e104ae4101963b04e2f { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor' } -C3N-02590.RNA-Seq.chimeric.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 80e3a050-17e6-404a-adec-7674760b03d2.rna_seq.chimeric.gdc_realn.bam 9486077 BAM chimeric harmonized CPTAC3 d4d1ba91-9e1a-40e1-9ebb-7800ffb8c9f5 66350bbe68505e5578abf65da10f7746 { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor' } -C3N-02590.RNA-Seq.genomic.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 80e3a050-17e6-404a-adec-7674760b03d2.rna_seq.genomic.gdc_realn.bam 12774966356 BAM genomic harmonized CPTAC3 49785b65-2d8c-4671-8dc9-c4965231357c 6c36310774c37ba3fe4866ed01aca5b6 { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor' } -C3N-02590.RNA-Seq.R1_L001.T C3N-02590 PDA RNA-Seq tumor CPT0187590016 190115_UNC31-K00269_0179_BH357YBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 3131688108 FASTQ R1_L001 unaligned CPTAC3 84d73b44-bbb1-4a25-99d4-b8f1b74f571c b119b1ab9d2c23b730f2c95599d9ca31 { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor' } -C3N-02590.RNA-Seq.R2_L001.T C3N-02590 PDA RNA-Seq tumor CPT0187590016 190115_UNC31-K00269_0179_BH357YBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 3483715687 FASTQ R2_L001 unaligned CPTAC3 83fd17f6-28eb-46d2-81b0-2ef839a1a9fd b1709f9b738bdf839f7fd2a4c0b9cc4c { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor' } -C3N-02590.RNA-Seq.transcriptome.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 80e3a050-17e6-404a-adec-7674760b03d2.rna_seq.transcriptome.gdc_realn.bam 6763582791 BAM transcriptome harmonized CPTAC3 7de231ea-13b5-4eef-ae79-886ab3f5ed9e b83fca96f4e0b584d568331bb57d50be { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor' } +C3N-02590.RNA-Seq.chimeric.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 c835f9ef-30b4-415a-b09e-b218f6b04ae4.rna_seq.chimeric.gdc_realn.bam 9483334 BAM chimeric harmonized CPTAC3 3d05644f-7bd5-4a72-b513-e4ee9dbd3617 0c7895b8da0e5712ee3a3fe6b5eb4c03 { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor' } +C3N-02590.RNA-Seq.genomic.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 c835f9ef-30b4-415a-b09e-b218f6b04ae4.rna_seq.genomic.gdc_realn.bam 12776263409 BAM genomic harmonized CPTAC3 7a8f1808-115b-4153-87ae-92ed4db140de 9cbb7a6f0c1a1ba8fa40b7dacd8c7d30 { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor' } +C3N-02590.RNA-Seq.R1_L001.T C3N-02590 PDA RNA-Seq tumor CPT0187590016 190115_UNC31-K00269_0179_BH357YBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 3131688108 FASTQ R1_L001 unaligned CPTAC3 84d73b44-bbb1-4a25-99d4-b8f1b74f571c b119b1ab9d2c23b730f2c95599d9ca31 { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02590.RNA-Seq.R2_L001.T C3N-02590 PDA RNA-Seq tumor CPT0187590016 190115_UNC31-K00269_0179_BH357YBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 3483715687 FASTQ R2_L001 unaligned CPTAC3 83fd17f6-28eb-46d2-81b0-2ef839a1a9fd b1709f9b738bdf839f7fd2a4c0b9cc4c { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02590.RNA-Seq.transcriptome.T.hg38 C3N-02590 PDA RNA-Seq tumor CPT0187590016 c835f9ef-30b4-415a-b09e-b218f6b04ae4.rna_seq.transcriptome.gdc_realn.bam 7164521480 BAM transcriptome harmonized CPTAC3 4bdcb7da-22fe-43b3-b781-a20da5e2b8a3 d3cfe3603f28118fbafe8786d7e2023d { 'aliquot_tag': 'ALQ_b45b0903', 'gdc_sample_type': 'Primary Tumor' } C3N-02590.WGS.N C3N-02590 PDA WGS blood_normal CPT0187630002 CPT0187630002.WholeGenome.RP-1303.bam 62669268624 BAM aligned CPTAC3 a7bdad43-f3fd-4058-a78a-34ef34bd3acd 6802686f28caa189549b0c9b8ebb0af3 { 'aliquot_tag': 'ALQ_66099654', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02590.WGS.N.hg38 C3N-02590 PDA WGS blood_normal CPT0187630002 ade0461b-bf5a-4f6c-8fee-09d43580e9c8_wgs_gdc_realn.bam 90540505781 BAM harmonized CPTAC3 dd10fbb1-dccd-4561-a48b-1ee485a78bef 5b04ef022e8fd357c59c9bd9b6583886 { 'aliquot_tag': 'ALQ_66099654', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02590.WXS.N C3N-02590 PDA WXS blood_normal CPT0187630002 CPT0187630002.WholeExome.RP-1303.bam 30121240731 BAM aligned CPTAC3 39604754-f3a4-46a6-901c-1b2d667ad74a 462a28ae64ecc7220868575add828de9 { 'aliquot_tag': 'ALQ_66099654', 'gdc_sample_type': 'Blood Derived Normal' } @@ -31879,9 +34015,9 @@ C3N-02592.MethArray.Red.T C3N-02592 PDA Methylation Array tumor CPT0162760006 20 C3N-02592.miRNA-Seq.T C3N-02592 PDA miRNA-Seq tumor CPT0162760009 190712_UNC32-K00270_0192_BH7HL3BBXY_CATTTT_S11_L006_R1_001.unaln.bam 240691968 BAM unaligned CPTAC3 030a0ace-f36d-4996-84a7-d9bd06f12293 7be2350b96ead9b8bed8b14305b45441 { 'aliquot_tag': 'ALQ_b5d52e9c', 'gdc_sample_type': 'Primary Tumor' } C3N-02592.miRNA-Seq.T.hg38 C3N-02592 PDA miRNA-Seq tumor CPT0162760009 4670d6ec-b2f7-40d7-ae66-039ad794cc76_mirnaseq_gdc_realn.bam 264587731 BAM harmonized CPTAC3 32f7da4f-457f-439d-a8cf-940c96a30bb7 e5aec24ab824a2ed791d41bc0db52ead { 'aliquot_tag': 'ALQ_b5d52e9c', 'gdc_sample_type': 'Primary Tumor' } C3N-02592.RNA-Seq.chimeric.T.hg38 C3N-02592 PDA RNA-Seq tumor CPT0162760009 d75759ae-3040-4b99-9a90-b691fa0d497c.rna_seq.chimeric.gdc_realn.bam 38988076 BAM chimeric harmonized CPTAC3 07c69c7c-081f-46fa-8bb0-9691946f4a45 1e764756c57b3fa44d0e3a18b3892788 { 'aliquot_tag': 'ALQ_b5d52e9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02592.RNA-Seq.genomic.T.hg38 C3N-02592 PDA RNA-Seq tumor CPT0162760009 d75759ae-3040-4b99-9a90-b691fa0d497c.rna_seq.genomic.gdc_realn.bam 10567659878 BAM genomic harmonized CPTAC3 751b478c-8477-4e3e-8f48-889675c86ae9 8fec6edb8db55c40af06c0627be6c823 { 'aliquot_tag': 'ALQ_b5d52e9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02592.RNA-Seq.R1_L005.T C3N-02592 PDA RNA-Seq tumor CPT0162760009 190614_UNC32-K00270_0182_BH7777BBXY_AGCCTCAT-AGTAGAGA_S20_L005_R1_001.fastq.gz 4240838662 FASTQ R1_L005 unaligned CPTAC3 ebbfc55a-b377-42df-b70d-5afd5caf59c3 f9dc67c01e0408e79c51c5da8cc80ec2 { 'aliquot_tag': 'ALQ_b5d52e9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02592.RNA-Seq.R2_L005.T C3N-02592 PDA RNA-Seq tumor CPT0162760009 190614_UNC32-K00270_0182_BH7777BBXY_AGCCTCAT-AGTAGAGA_S20_L005_R2_001.fastq.gz 4592710542 FASTQ R2_L005 unaligned CPTAC3 2ec7b054-6c3b-4ec8-b5ef-a6cb0c12db87 ecae262283c429462f614704feb38c3e { 'aliquot_tag': 'ALQ_b5d52e9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02592.RNA-Seq.genomic.T.hg38 C3N-02592 PDA RNA-Seq tumor CPT0162760009 d75759ae-3040-4b99-9a90-b691fa0d497c.rna_seq.genomic.gdc_realn.bam 10567659878 BAM genomic harmonized CPTAC3 4f67283c-e362-4bb1-b4d5-852b23a6ae6c 8fec6edb8db55c40af06c0627be6c823 { 'aliquot_tag': 'ALQ_b5d52e9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02592.RNA-Seq.R1_L005.T C3N-02592 PDA RNA-Seq tumor CPT0162760009 190614_UNC32-K00270_0182_BH7777BBXY_AGCCTCAT-AGTAGAGA_S20_L005_R1_001.fastq.gz 4240838662 FASTQ R1_L005 unaligned CPTAC3 ebbfc55a-b377-42df-b70d-5afd5caf59c3 f9dc67c01e0408e79c51c5da8cc80ec2 { 'aliquot_tag': 'ALQ_b5d52e9c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02592.RNA-Seq.R2_L005.T C3N-02592 PDA RNA-Seq tumor CPT0162760009 190614_UNC32-K00270_0182_BH7777BBXY_AGCCTCAT-AGTAGAGA_S20_L005_R2_001.fastq.gz 4592710542 FASTQ R2_L005 unaligned CPTAC3 2ec7b054-6c3b-4ec8-b5ef-a6cb0c12db87 ecae262283c429462f614704feb38c3e { 'aliquot_tag': 'ALQ_b5d52e9c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-02592.RNA-Seq.transcriptome.T.hg38 C3N-02592 PDA RNA-Seq tumor CPT0162760009 d75759ae-3040-4b99-9a90-b691fa0d497c.rna_seq.transcriptome.gdc_realn.bam 10915766366 BAM transcriptome harmonized CPTAC3 86f76124-1443-4262-8f64-a71b55b60b92 e216a81173c70ac8ba8b7e502f9cfeb6 { 'aliquot_tag': 'ALQ_b5d52e9c', 'gdc_sample_type': 'Primary Tumor' } C3N-02592.WGS.N C3N-02592 PDA WGS blood_normal CPT0162820002 CPT0162820002.WholeGenome.RP-1303.bam 55285214824 BAM aligned CPTAC3 b5015ca0-ccba-44c6-9e19-e89399dc8d89 7b6110b19fa22339e488a5321efacf34 { 'aliquot_tag': 'ALQ_26d1e301', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02592.WGS.N.hg38 C3N-02592 PDA WGS blood_normal CPT0162820002 e82ffcee-6ec4-4bfd-b8fd-1e92111a7ec3_wgs_gdc_realn.bam 81831792121 BAM harmonized CPTAC3 0d734c6a-2d89-483a-a2de-a647e6e3fa98 7190b17dc28d3754f617000c8df9bd96 { 'aliquot_tag': 'ALQ_26d1e301', 'gdc_sample_type': 'Blood Derived Normal' } @@ -31891,32 +34027,41 @@ C3N-02592.WXS.N C3N-02592 PDA WXS blood_normal CPT0162820002 CPT0162820002.Whole C3N-02592.WXS.N.hg38 C3N-02592 PDA WXS blood_normal CPT0162820002 e82ffcee-6ec4-4bfd-b8fd-1e92111a7ec3_wxs_gdc_realn.bam 30449199716 BAM harmonized CPTAC3 0bf1b98c-fa49-4fb7-8b8c-edb0059aa775 38d95e27a81389217f2a9e9cf174cc04 { 'aliquot_tag': 'ALQ_26d1e301', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02592.WXS.T C3N-02592 PDA WXS tumor CPT0162760006 CPT0162760006.WholeExome.RP-1303.bam 50433519264 BAM aligned CPTAC3 a5724f15-059d-4dee-982f-e2425bf50421 4378ccb76ee5934ef0b2e3222ffa7733 { 'aliquot_tag': 'ALQ_256a330d', 'gdc_sample_type': 'Primary Tumor' } C3N-02592.WXS.T.hg38 C3N-02592 PDA WXS tumor CPT0162760006 61953ee5-9be4-4e83-abae-1bc34aa7cbb0_wxs_gdc_realn.bam 70267238794 BAM harmonized CPTAC3 bc04e678-67f7-4638-9a99-885776094996 4e6d54986261a035d06c1ca2af5b8389 { 'aliquot_tag': 'ALQ_256a330d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02594.ANN_9675dc49.RNA-Seq.chimeric.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 d5cedef9-e876-4555-90e0-ed622f730a4f.rna_seq.chimeric.gdc_realn.bam 198882545 BAM chimeric harmonized CPTAC3 a21ec9f5-306e-4a5e-b280-887677858abe 2f1050dd659acd6b00cccd35fd185a43 { 'aliquot_tag': 'ANN_9675dc49', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02594.ANN_9675dc49.RNA-Seq.genomic.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 d5cedef9-e876-4555-90e0-ed622f730a4f.rna_seq.genomic.gdc_realn.bam 12694184597 BAM genomic harmonized CPTAC3 648eaf3a-af96-422b-8f8e-4971205a5daa 2017eb0f5a6ceda574de5105cd131fd8 { 'aliquot_tag': 'ANN_9675dc49', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02594.ANN_9675dc49.RNA-Seq.R1_L005.T C3N-02594 PDA RNA-Seq tumor CPT0187640027 200807_UNC32-K00270_0255_AHHY2WBBXY_TGCGAGAC-CATTGTTG_S3_L005_R1_001.fastq.gz 4800841678 FASTQ R1_L005 unaligned CPTAC3 3df2a0b9-0800-444f-a464-382f1eaca300 c14f2ac59b9e263ddcea552e8d0773cb { 'aliquot_tag': 'ANN_9675dc49', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02594.ANN_9675dc49.RNA-Seq.R2_L005.T C3N-02594 PDA RNA-Seq tumor CPT0187640027 200807_UNC32-K00270_0255_AHHY2WBBXY_TGCGAGAC-CATTGTTG_S3_L005_R2_001.fastq.gz 5330813125 FASTQ R2_L005 unaligned CPTAC3 1a53587a-e0d6-41de-971b-1436817632be 642d718dfc6fb7b9b7edbe0f8265a113 { 'aliquot_tag': 'ANN_9675dc49', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02594.ANN_9675dc49.RNA-Seq.transcriptome.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 d5cedef9-e876-4555-90e0-ed622f730a4f.rna_seq.transcriptome.gdc_realn.bam 11829699050 BAM transcriptome harmonized CPTAC3 d035a33c-cab6-4c8e-be11-18e12ee4ff30 c94011e2326d594af33cd54d525b888d { 'aliquot_tag': 'ANN_9675dc49', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02594.ANN_9675dc49.RNA-Seq.chimeric.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 cdf8a945-a960-4783-850a-3aec0960d376.rna_seq.chimeric.gdc_realn.bam 198910292 BAM chimeric harmonized CPTAC3 53a81f89-6a9e-4ce4-8c9b-0558a2e9a083 8b74951e7eb32cc8f6009936dac16528 { 'aliquot_tag': 'ANN_9675dc49', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02594.ANN_9675dc49.RNA-Seq.genomic.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 cdf8a945-a960-4783-850a-3aec0960d376.rna_seq.genomic.gdc_realn.bam 12716389018 BAM genomic harmonized CPTAC3 deed7771-1fd1-4f25-a643-a86979f2d3ab 657944565ed3b3be4cb0077e9af8739f { 'aliquot_tag': 'ANN_9675dc49', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02594.ANN_9675dc49.RNA-Seq.R1_L005.T C3N-02594 PDA RNA-Seq tumor CPT0187640027 200807_UNC32-K00270_0255_AHHY2WBBXY_TGCGAGAC-CATTGTTG_S3_L005_R1_001.fastq.gz 4800841678 FASTQ R1_L005 unaligned CPTAC3 3df2a0b9-0800-444f-a464-382f1eaca300 c14f2ac59b9e263ddcea552e8d0773cb { 'aliquot_tag': 'ANN_9675dc49', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3N-02594.ANN_9675dc49.RNA-Seq.R2_L005.T C3N-02594 PDA RNA-Seq tumor CPT0187640027 200807_UNC32-K00270_0255_AHHY2WBBXY_TGCGAGAC-CATTGTTG_S3_L005_R2_001.fastq.gz 5330813125 FASTQ R2_L005 unaligned CPTAC3 1a53587a-e0d6-41de-971b-1436817632be 642d718dfc6fb7b9b7edbe0f8265a113 { 'aliquot_tag': 'ANN_9675dc49', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3N-02594.ANN_9675dc49.RNA-Seq.transcriptome.T.hg38 C3N-02594 PDA RNA-Seq tumor CPT0187640027 cdf8a945-a960-4783-850a-3aec0960d376.rna_seq.transcriptome.gdc_realn.bam 13067117801 BAM transcriptome harmonized CPTAC3 cf383da8-5e35-4bd5-9f5d-9c3bd80184bc 3a3a668241d703b13b696a9071952cfb { 'aliquot_tag': 'ANN_9675dc49', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } C3N-02594.DUP_110a78ab.WXS.T C3N-02594 PDA WXS tumor CPT0187640030 CPT0187640030.WholeExome.RP-1303.bam 25901101185 BAM aligned CPTAC3 d2511eee-669e-452a-b796-d7e063da27fc 37411912274708ca9dddd4e3bec27143 { 'aliquot_tag': 'DUP_110a78ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02594.DUP_110a78ab.WXS.T.hg38 C3N-02594 PDA WXS tumor CPT0187640030 dde2da8d-74d7-4efe-91a2-9455a8ce0277_wxs_gdc_realn.bam 35790397792 BAM harmonized CPTAC3 3bde91a6-15fc-42ae-989c-ecf18bd66124 d745055aa66add774050f47517a0c7f8 { 'aliquot_tag': 'DUP_110a78ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-02594.DUP_538c8d9a.RNA-Seq.chimeric.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 798083df-dc16-40fe-a32d-d34469f4bd6b.rna_seq.chimeric.gdc_realn.bam 317783491 BAM chimeric harmonized CPTAC3 71d13ba8-e3e9-4809-a013-263ad3ba6e20 408149af3ef5331103625c133b0cea2e { 'aliquot_tag': 'DUP_538c8d9a', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02594.DUP_538c8d9a.RNA-Seq.genomic.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 798083df-dc16-40fe-a32d-d34469f4bd6b.rna_seq.genomic.gdc_realn.bam 7353677296 BAM genomic harmonized CPTAC3 61d4614b-045b-4ecb-be16-2f093a1fb0b6 074370fba400c41bfc069c02c11b1a86 { 'aliquot_tag': 'DUP_538c8d9a', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02594.DUP_538c8d9a.RNA-Seq.R1_L003.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 220126_UNC32-K00270_0314_AHMVJ7BBXY_CGTTAGAA-TTCAGGTC_S10_L003_R1_001.fastq.gz 3380538059 FASTQ R1_L003 unaligned CPTAC3 3d612a4f-4fa0-4ac6-ac4a-1dc01ae3b6e1 c8279166a8685ce73107e52f616ade54 { 'aliquot_tag': 'DUP_538c8d9a', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L003' } +C3N-02594.DUP_538c8d9a.RNA-Seq.R2_L003.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 220126_UNC32-K00270_0314_AHMVJ7BBXY_CGTTAGAA-TTCAGGTC_S10_L003_R2_001.fastq.gz 3693955184 FASTQ R2_L003 unaligned CPTAC3 c5bb9fd2-e3fa-4064-8660-88e7e8500c2f 7936a99eccf8f32ef970f43b4e3c56fc { 'aliquot_tag': 'DUP_538c8d9a', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L003' } +C3N-02594.DUP_538c8d9a.RNA-Seq.transcriptome.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 798083df-dc16-40fe-a32d-d34469f4bd6b.rna_seq.transcriptome.gdc_realn.bam 8109679865 BAM transcriptome harmonized CPTAC3 36a3bd72-203e-4fdf-ad27-55d1d53812e7 d69213018510f1fd29a8a0723a785e5c { 'aliquot_tag': 'DUP_538c8d9a', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02594.DUP_6511a3f9.RNA-Seq.chimeric.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 91657094-deb8-459a-a61a-048a83b1cd39.rna_seq.chimeric.gdc_realn.bam 531914580 BAM chimeric harmonized CPTAC3 3edb1bbb-123c-442c-aa39-17a23463967d d3776c8c7d16056f1045973e3cd26b52 { 'aliquot_tag': 'DUP_6511a3f9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02594.DUP_6511a3f9.RNA-Seq.genomic.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 91657094-deb8-459a-a61a-048a83b1cd39.rna_seq.genomic.gdc_realn.bam 9203055307 BAM genomic harmonized CPTAC3 6de7f96a-a9f2-46a7-8d34-412b6ced2a3d e81b8d60879fcf415918e97761a0a7ee { 'aliquot_tag': 'DUP_6511a3f9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02594.DUP_6511a3f9.RNA-Seq.R1_L006.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 220114_UNC32-K00270_0310_AHMWT5BBXY_GGCTTAAG-TCGTGACC_S19_L006_R1_001.fastq.gz 4202715688 FASTQ R1_L006 unaligned CPTAC3 f0864d29-bcbe-411d-a4b2-642e28a958a3 45deb15487c315693ddb9873605fa3b1 { 'aliquot_tag': 'DUP_6511a3f9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L006' } +C3N-02594.DUP_6511a3f9.RNA-Seq.R2_L006.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 220114_UNC32-K00270_0310_AHMWT5BBXY_GGCTTAAG-TCGTGACC_S19_L006_R2_001.fastq.gz 4465716068 FASTQ R2_L006 unaligned CPTAC3 b35f33fa-faa7-48ad-b608-914bd6e7bf6e 92e17fe43a1ac658351f25885f145045 { 'aliquot_tag': 'DUP_6511a3f9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L006' } +C3N-02594.DUP_6511a3f9.RNA-Seq.transcriptome.A.hg38 C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 91657094-deb8-459a-a61a-048a83b1cd39.rna_seq.transcriptome.gdc_realn.bam 10432131536 BAM transcriptome harmonized CPTAC3 4368b6d7-9c24-4248-80ca-a085fdf2d8ba a2edbb429c4fde869b1a88f55ea67a36 { 'aliquot_tag': 'DUP_6511a3f9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02594.DUP_660d483d.WXS.T C3N-02594 PDA WXS tumor CPT0187640031 CPT0187640031.WholeExome.RP-1303.bam 29400549559 BAM aligned CPTAC3 060f38c1-cd10-44b7-850a-a5de5f0b5479 7b5c67805637e06aaee987e88a34db05 { 'aliquot_tag': 'DUP_660d483d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02594.DUP_660d483d.WXS.T.hg38 C3N-02594 PDA WXS tumor CPT0187640031 8214e73f-5332-4569-9f96-d9099fd112c3_wxs_gdc_realn.bam 40454753839 BAM harmonized CPTAC3 bbc00470-d5dc-4276-b1df-e9dd09dc776d fa0b56339df4fa5f3c3085db05ea7b77 { 'aliquot_tag': 'DUP_660d483d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02594.DUP_eaf53f21.WXS.N C3N-02594 PDA WXS blood_normal CPT0187700002 CPT0187700002.WholeExome.RP-1303.bam 36446945070 BAM aligned CPTAC3 b0f6783b-76a1-4bb5-8f2f-8cb20b494278 c29d2036900792dab7c59c241e8cbd06 { 'aliquot_tag': 'DUP_eaf53f21', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02594.DUP_eaf53f21.WXS.N.hg38 C3N-02594 PDA WXS blood_normal CPT0187700002 254a2cee-22d7-4d03-867a-a78b0ee78afa_wxs_gdc_realn.bam 49806469469 BAM harmonized CPTAC3 3133e6fc-60d7-400f-bc83-0a756ea002fe 463b8b0697380ef48b3ab4903bfeb1d1 { 'aliquot_tag': 'DUP_eaf53f21', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3N-02594.RNA-Seq.R1_L003.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 220126_UNC32-K00270_0314_AHMVJ7BBXY_CGTTAGAA-TTCAGGTC_S10_L003_R1_001.fastq.gz 3380538059 FASTQ R1_L003 unaligned CPTAC3 3d612a4f-4fa0-4ac6-ac4a-1dc01ae3b6e1 c8279166a8685ce73107e52f616ade54 { 'aliquot_tag': 'ALQ_538c8d9a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02594.RNA-Seq.R1_L006.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 220114_UNC32-K00270_0310_AHMWT5BBXY_GGCTTAAG-TCGTGACC_S19_L006_R1_001.fastq.gz 4202715688 FASTQ R1_L006 unaligned CPTAC3 f0864d29-bcbe-411d-a4b2-642e28a958a3 45deb15487c315693ddb9873605fa3b1 { 'aliquot_tag': 'ALQ_6511a3f9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02594.RNA-Seq.R2_L003.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660041 220126_UNC32-K00270_0314_AHMVJ7BBXY_CGTTAGAA-TTCAGGTC_S10_L003_R2_001.fastq.gz 3693955184 FASTQ R2_L003 unaligned CPTAC3 c5bb9fd2-e3fa-4064-8660-88e7e8500c2f 7936a99eccf8f32ef970f43b4e3c56fc { 'aliquot_tag': 'ALQ_538c8d9a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02594.RNA-Seq.R2_L006.A C3N-02594 PDA RNA-Seq tissue_normal CPT0187660038 220114_UNC32-K00270_0310_AHMWT5BBXY_GGCTTAAG-TCGTGACC_S19_L006_R2_001.fastq.gz 4465716068 FASTQ R2_L006 unaligned CPTAC3 b35f33fa-faa7-48ad-b608-914bd6e7bf6e 92e17fe43a1ac658351f25885f145045 { 'aliquot_tag': 'ALQ_6511a3f9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02595.MethArray.Green.T C3N-02595 UCEC Methylation Array tumor CPT0181810007 203561450025_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 b2e81e85-ffe6-4909-83da-5ba3a3002766 4dc55bfac01ec3808f472e341d0ef6f7 { 'aliquot_tag': 'ALQ_357965f1', 'gdc_sample_type': 'Primary Tumor' } C3N-02595.MethArray.Red.T C3N-02595 UCEC Methylation Array tumor CPT0181810007 203561450025_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 967a558a-5b88-4239-aacb-c8b97f73bd44 3bffee10e3f7898b54a5b8330ab39886 { 'aliquot_tag': 'ALQ_357965f1', 'gdc_sample_type': 'Primary Tumor' } C3N-02595.miRNA-Seq.T C3N-02595 UCEC miRNA-Seq tumor CPT0181810010 190508_UNC31-K00269_0215_BH7FYKBBXY_CATTTT_S35_L004_R1_001.unaln.bam 220335067 BAM unaligned CPTAC3 14c1d43b-68c4-4cdd-a1cb-d244d3fcf31f 098968f349d9af630447c4a50400abf6 { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor' } C3N-02595.miRNA-Seq.T.hg38 C3N-02595 UCEC miRNA-Seq tumor CPT0181810010 ce3d96ab-eada-49d1-9a5c-6d31b3eb6170_mirnaseq_gdc_realn.bam 253133999 BAM harmonized CPTAC3 b959229d-d654-4b0e-8a74-9de3985e1532 7802f9306cf03aded75ab17d9198b6fb { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor' } -C3N-02595.RNA-Seq.chimeric.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 72f53953-56bc-48d7-9704-67c310b28a3d.rna_seq.chimeric.gdc_realn.bam 25176817 BAM chimeric harmonized CPTAC3 ae72e040-b2f0-4101-ba09-fbf7f5585f8b 733e06504b204369c202fdb63347c2dc { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor' } -C3N-02595.RNA-Seq.genomic.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 72f53953-56bc-48d7-9704-67c310b28a3d.rna_seq.genomic.gdc_realn.bam 6028742819 BAM genomic harmonized CPTAC3 03a521e2-961c-4dbf-833d-e6642274d45f ab34ab54df45cdbbd32b64de6e1423fa { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor' } -C3N-02595.RNA-Seq.R1_L002.T C3N-02595 UCEC RNA-Seq tumor CPT0181810010 190523_UNC32-K00270_0176_BH7CW7BBXY_CTGCTTCC-GATAGATC_S8_L002_R1_001.fastq.gz 2826989732 FASTQ R1_L002 unaligned CPTAC3 a2db1e76-1ff7-4d03-a36b-e152b29e5bfa 43ca177496ed6c5fedddf67360d36db0 { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor' } -C3N-02595.RNA-Seq.R1_.T C3N-02595 UCEC RNA-Seq tumor CPT0352940001 20210806_P4_6_WB7988-plate4_S31_R1_001.fastq.gz 3512042391 FASTQ R1_ unaligned CPTAC3 e74c340f-5894-4818-8a0a-eb0042b026bc 5b3c4d85ff280281b1765726245d2fc6 { 'aliquot_tag': 'ALQ_5bbdbbdb', 'gdc_sample_type': 'Primary Tumor' } -C3N-02595.RNA-Seq.R2_L002.T C3N-02595 UCEC RNA-Seq tumor CPT0181810010 190523_UNC32-K00270_0176_BH7CW7BBXY_CTGCTTCC-GATAGATC_S8_L002_R2_001.fastq.gz 3269626696 FASTQ R2_L002 unaligned CPTAC3 99c567b0-e990-42e3-b105-821e28c807f6 357e38b02fcddf639faac45c8a483be2 { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor' } -C3N-02595.RNA-Seq.R2_.T C3N-02595 UCEC RNA-Seq tumor CPT0352940001 20210806_P4_6_WB7988-plate4_S31_R2_001.fastq.gz 3379384098 FASTQ R2_ unaligned CPTAC3 726830e3-7b38-447f-8f94-ee5ad3bc2419 44fac08f20c7c55f762bea676077beea { 'aliquot_tag': 'ALQ_5bbdbbdb', 'gdc_sample_type': 'Primary Tumor' } -C3N-02595.RNA-Seq.transcriptome.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 72f53953-56bc-48d7-9704-67c310b28a3d.rna_seq.transcriptome.gdc_realn.bam 6765255811 BAM transcriptome harmonized CPTAC3 afb573e9-f988-4440-a5cb-f29b9acf1554 9ea1c1d4d6b33eab9cc6c9efb9a4d558 { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor' } +C3N-02595.RNA-Seq.chimeric.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 490b7dde-0347-4a38-b49b-e3cf1a4f547a.rna_seq.chimeric.gdc_realn.bam 25164088 BAM chimeric harmonized CPTAC3 7c4bf1fe-a3d6-4abb-a4eb-c19acd7d0976 72bf6ab9561d64e79663fa1496ce64ff { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor' } +C3N-02595.RNA-Seq.chimeric.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0352940001 e626b1c0-aa94-467c-b02a-b00c9f6daaa8.rna_seq.chimeric.gdc_realn.bam 17332744 BAM chimeric harmonized CPTAC3 beda5f5a-4fc5-46f9-bbae-aaa9ea076419 3caa6292ee03d1dcffd474e39a0111d7 { 'aliquot_tag': 'ALQ_5bbdbbdb', 'gdc_sample_type': 'Primary Tumor' } +C3N-02595.RNA-Seq.genomic.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 490b7dde-0347-4a38-b49b-e3cf1a4f547a.rna_seq.genomic.gdc_realn.bam 6029734631 BAM genomic harmonized CPTAC3 9e02cc72-53ef-4693-a771-177ce2dffe28 272ee1cbcff9e95b30fd0dba541436d3 { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor' } +C3N-02595.RNA-Seq.genomic.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0352940001 e626b1c0-aa94-467c-b02a-b00c9f6daaa8.rna_seq.genomic.gdc_realn.bam 11098152717 BAM genomic harmonized CPTAC3 7e2ef1bd-f1c4-424c-841b-77a1aea5c0b2 b1ea87b0c60dc13dc801cdbd89e1e298 { 'aliquot_tag': 'ALQ_5bbdbbdb', 'gdc_sample_type': 'Primary Tumor' } +C3N-02595.RNA-Seq.R1_L002.T C3N-02595 UCEC RNA-Seq tumor CPT0181810010 190523_UNC32-K00270_0176_BH7CW7BBXY_CTGCTTCC-GATAGATC_S8_L002_R1_001.fastq.gz 2826989732 FASTQ R1_L002 unaligned CPTAC3 a2db1e76-1ff7-4d03-a36b-e152b29e5bfa 43ca177496ed6c5fedddf67360d36db0 { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02595.RNA-Seq.R2_L002.T C3N-02595 UCEC RNA-Seq tumor CPT0181810010 190523_UNC32-K00270_0176_BH7CW7BBXY_CTGCTTCC-GATAGATC_S8_L002_R2_001.fastq.gz 3269626696 FASTQ R2_L002 unaligned CPTAC3 99c567b0-e990-42e3-b105-821e28c807f6 357e38b02fcddf639faac45c8a483be2 { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02595.RNA-Seq.T C3N-02595 UCEC RNA-Seq tumor CPT0352940001 20210806_P4_6_WB7988-plate4_S31_R1_001.fastq.gz 3512042391 FASTQ unaligned CPTAC3 e74c340f-5894-4818-8a0a-eb0042b026bc 5b3c4d85ff280281b1765726245d2fc6 +C3N-02595.RNA-Seq.T C3N-02595 UCEC RNA-Seq tumor CPT0352940001 20210806_P4_6_WB7988-plate4_S31_R2_001.fastq.gz 3379384098 FASTQ unaligned CPTAC3 726830e3-7b38-447f-8f94-ee5ad3bc2419 44fac08f20c7c55f762bea676077beea +C3N-02595.RNA-Seq.transcriptome.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0181810010 490b7dde-0347-4a38-b49b-e3cf1a4f547a.rna_seq.transcriptome.gdc_realn.bam 7736082214 BAM transcriptome harmonized CPTAC3 decdc1d1-6984-40e4-8b40-7da87aa13da5 25300ed1cb29efb09a8e7e7f753399a6 { 'aliquot_tag': 'ALQ_b206c113', 'gdc_sample_type': 'Primary Tumor' } +C3N-02595.RNA-Seq.transcriptome.T.hg38 C3N-02595 UCEC RNA-Seq tumor CPT0352940001 e626b1c0-aa94-467c-b02a-b00c9f6daaa8.rna_seq.transcriptome.gdc_realn.bam 3486063938 BAM transcriptome harmonized CPTAC3 35b38fff-480d-4619-a5c0-a666634c1178 f8390fafbec1a877d6434cf209d5e23f { 'aliquot_tag': 'ALQ_5bbdbbdb', 'gdc_sample_type': 'Primary Tumor' } C3N-02595.WGS.N C3N-02595 UCEC WGS blood_normal CPT0181870002 CPT0181870002.WholeGenome.RP-1303.bam 84255972269 BAM aligned CPTAC3 df272482-6602-457e-bb65-5dff204503bf a8d684a83fdd69df38104a49e6062731 { 'aliquot_tag': 'ALQ_ca5364de', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02595.WGS.N.hg38 C3N-02595 UCEC WGS blood_normal CPT0181870002 ef5d49da-558d-4e70-850a-6ab1e14e0391_wgs_gdc_realn.bam 125247712621 BAM harmonized CPTAC3 070e3515-28d4-4825-ac12-adf3000d483b e5892ea1629c01e2d25fb92e28093b89 { 'aliquot_tag': 'ALQ_ca5364de', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02595.WGS.T C3N-02595 UCEC WGS tumor CPT0181810007 CPT0181810007.WholeGenome.RP-1303.bam 67121438251 BAM aligned CPTAC3 9f924144-8772-4059-8260-c4cc788e074b e6f9185477bee5642a2a572909e74882 { 'aliquot_tag': 'ALQ_357965f1', 'gdc_sample_type': 'Primary Tumor' } @@ -31929,13 +34074,16 @@ C3N-02598.MethArray.Green.T C3N-02598 UCEC Methylation Array tumor CPT0187960007 C3N-02598.MethArray.Red.T C3N-02598 UCEC Methylation Array tumor CPT0187960007 203561620086_R02C01_Red.idat 13676236 IDAT Red NA CPTAC3 d0de1503-1209-4fee-87e2-5f7c23417e23 bed5ddb96aa8169ad9260f1589a68466 { 'aliquot_tag': 'ALQ_2fd55f7e', 'gdc_sample_type': 'Primary Tumor' } C3N-02598.miRNA-Seq.T C3N-02598 UCEC miRNA-Seq tumor CPT0187960010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGGCC_S20_L003_R1_001.unaln.bam 234211367 BAM unaligned CPTAC3 e3679da6-8b2d-4d8c-bead-c4cd6b21a0fd 364da1922073e6fbb5c359c0dd0a8d95 { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor' } C3N-02598.miRNA-Seq.T.hg38 C3N-02598 UCEC miRNA-Seq tumor CPT0187960010 72a58292-602e-4022-b008-d2a867a9b1ad_mirnaseq_gdc_realn.bam 269775854 BAM harmonized CPTAC3 8b872b99-f00c-4ca5-a403-664d271db087 402e5f6162294d4c6a03820ca2e92653 { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02598.RNA-Seq.chimeric.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 7a98ab44-b809-4d59-a2af-59c17d9eb82a.rna_seq.chimeric.gdc_realn.bam 30694777 BAM chimeric harmonized CPTAC3 34673e55-9a45-4eb0-91ff-1b5ba4338ec7 ed8c4ea4c24608fadaaa1f0a229e9c40 { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02598.RNA-Seq.genomic.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 7a98ab44-b809-4d59-a2af-59c17d9eb82a.rna_seq.genomic.gdc_realn.bam 7423690190 BAM genomic harmonized CPTAC3 bf3bfc4e-6c62-4a49-b1a6-0cf39b155487 a4b1d61c4c044734c89017717c8ca952 { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02598.RNA-Seq.R1_L006.T C3N-02598 UCEC RNA-Seq tumor CPT0187960010 190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R1_001.fastq.gz 3501334415 FASTQ R1_L006 unaligned CPTAC3 ed069b3a-4f43-4cf7-9618-7146440a4d5a 5f1b5b99bd6eee5f46b01ba747673220 { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02598.RNA-Seq.R1_.T C3N-02598 UCEC RNA-Seq tumor CPT0352970001 20210806_P4_3_WB7988-plate4_S28_R1_001.fastq.gz 4876552121 FASTQ R1_ unaligned CPTAC3 5597d62b-d0ba-41f1-85e5-e0789d4c126e cf8a62d6fb8e90595e8690d7a67cb26f { 'aliquot_tag': 'ALQ_1c1dc10b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02598.RNA-Seq.R2_L006.T C3N-02598 UCEC RNA-Seq tumor CPT0187960010 190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R2_001.fastq.gz 4042694872 FASTQ R2_L006 unaligned CPTAC3 70c7569f-ba60-4436-b121-8e2c7594613c 21b5c930ab9e79be73a646158a4d2ca9 { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02598.RNA-Seq.R2_.T C3N-02598 UCEC RNA-Seq tumor CPT0352970001 20210806_P4_3_WB7988-plate4_S28_R2_001.fastq.gz 4715268363 FASTQ R2_ unaligned CPTAC3 44bcb81f-cda0-42cb-9978-6653067da8ac bcd0c85ef361b8c6f9927694f8b7ae26 { 'aliquot_tag': 'ALQ_1c1dc10b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02598.RNA-Seq.transcriptome.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 7a98ab44-b809-4d59-a2af-59c17d9eb82a.rna_seq.transcriptome.gdc_realn.bam 10137849540 BAM transcriptome harmonized CPTAC3 4227a6ee-ec12-4296-a920-cda60bfb8456 58ef528789829e6cb47cb5fafddd207b { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02598.RNA-Seq.chimeric.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 2be8f73a-13dd-46d7-af7d-5f9cfd192bf1.rna_seq.chimeric.gdc_realn.bam 30681214 BAM chimeric harmonized CPTAC3 ce3c4f85-211f-4d0b-b3ad-a03b6a094ca3 ba206d345c9bebc6180d8de93b1c1875 { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02598.RNA-Seq.chimeric.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0352970001 e06d0df9-e7be-455e-afbd-a5bb55133680.rna_seq.chimeric.gdc_realn.bam 38800441 BAM chimeric harmonized CPTAC3 1479c6e5-f711-42f7-8de0-7c2d9ff63b75 02a72663d054513ebede15d74cf80a26 { 'aliquot_tag': 'ALQ_1c1dc10b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02598.RNA-Seq.genomic.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 2be8f73a-13dd-46d7-af7d-5f9cfd192bf1.rna_seq.genomic.gdc_realn.bam 7425033694 BAM genomic harmonized CPTAC3 13ca9fa7-a589-4c8f-868e-754352b2bc41 3bd27b151000e1b23a988a3ac5810e9a { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02598.RNA-Seq.genomic.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0352970001 e06d0df9-e7be-455e-afbd-a5bb55133680.rna_seq.genomic.gdc_realn.bam 15176021850 BAM genomic harmonized CPTAC3 92e9a23d-3670-4a5f-ab69-4769c0f1d72d 1ffeba00bee70c58bb0a8a3baa29a24a { 'aliquot_tag': 'ALQ_1c1dc10b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02598.RNA-Seq.R1_L006.T C3N-02598 UCEC RNA-Seq tumor CPT0187960010 190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R1_001.fastq.gz 3501334415 FASTQ R1_L006 unaligned CPTAC3 ed069b3a-4f43-4cf7-9618-7146440a4d5a 5f1b5b99bd6eee5f46b01ba747673220 { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02598.RNA-Seq.R2_L006.T C3N-02598 UCEC RNA-Seq tumor CPT0187960010 190523_UNC32-K00270_0176_BH7CW7BBXY_CCTTCACC-GACGCTCC_S24_L006_R2_001.fastq.gz 4042694872 FASTQ R2_L006 unaligned CPTAC3 70c7569f-ba60-4436-b121-8e2c7594613c 21b5c930ab9e79be73a646158a4d2ca9 { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02598.RNA-Seq.T C3N-02598 UCEC RNA-Seq tumor CPT0352970001 20210806_P4_3_WB7988-plate4_S28_R1_001.fastq.gz 4876552121 FASTQ unaligned CPTAC3 5597d62b-d0ba-41f1-85e5-e0789d4c126e cf8a62d6fb8e90595e8690d7a67cb26f +C3N-02598.RNA-Seq.T C3N-02598 UCEC RNA-Seq tumor CPT0352970001 20210806_P4_3_WB7988-plate4_S28_R2_001.fastq.gz 4715268363 FASTQ unaligned CPTAC3 44bcb81f-cda0-42cb-9978-6653067da8ac bcd0c85ef361b8c6f9927694f8b7ae26 +C3N-02598.RNA-Seq.transcriptome.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0187960010 2be8f73a-13dd-46d7-af7d-5f9cfd192bf1.rna_seq.transcriptome.gdc_realn.bam 11662675624 BAM transcriptome harmonized CPTAC3 2fc5cf67-3db6-462e-b801-edb530869a00 ccaacf490d2729f08a8f6a4c882d314e { 'aliquot_tag': 'ALQ_a8aafb9c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02598.RNA-Seq.transcriptome.T.hg38 C3N-02598 UCEC RNA-Seq tumor CPT0352970001 e06d0df9-e7be-455e-afbd-a5bb55133680.rna_seq.transcriptome.gdc_realn.bam 4221987176 BAM transcriptome harmonized CPTAC3 7fa7edcf-7819-4391-b3a6-effe21c5ad5a dfbd7c9ca0e5937a5c8aad12f4dbd917 { 'aliquot_tag': 'ALQ_1c1dc10b', 'gdc_sample_type': 'Primary Tumor' } C3N-02598.WGS.N C3N-02598 UCEC WGS blood_normal CPT0188020002 CPT0188020002.WholeGenome.RP-1303.bam 79205612629 BAM aligned CPTAC3 bb5afaf9-4d7c-48c2-a08f-55067928dc56 c34d8e1eb0dd64049fd8fc0fbeac7445 { 'aliquot_tag': 'ALQ_7b782c10', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02598.WGS.N.hg38 C3N-02598 UCEC WGS blood_normal CPT0188020002 aa9c04dc-d109-4e3c-96d3-814f821ef624_wgs_gdc_realn.bam 116719229925 BAM harmonized CPTAC3 60f817da-3428-402e-87a7-fc81b5f9b243 4ebbed58061c3c2d0de53e7861f2e1dd { 'aliquot_tag': 'ALQ_7b782c10', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02598.WGS.T C3N-02598 UCEC WGS tumor CPT0187960007 CPT0187960007.WholeGenome.RP-1303.bam 72537021823 BAM aligned CPTAC3 3c6c9374-2df9-411c-9e0d-44058621ddb4 da4c2c3be4f3bbe1ecaaf2f2969c8248 { 'aliquot_tag': 'ALQ_2fd55f7e', 'gdc_sample_type': 'Primary Tumor' } @@ -31948,11 +34096,11 @@ C3N-02599.MethArray.Green.T C3N-02599 GBM Methylation Array tumor CPT0224840006 C3N-02599.MethArray.Red.T C3N-02599 GBM Methylation Array tumor CPT0224840006 204367460011_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 f4746f63-04f0-447a-90d5-fe95160b61e4 081bd120d47a555981eefcdbbf2d9298 { 'aliquot_tag': 'ALQ_70ebd5bd', 'gdc_sample_type': 'Primary Tumor' } C3N-02599.miRNA-Seq.T C3N-02599 GBM miRNA-Seq tumor CPT0224840013 200403_UNC31-K00269_0274_AHCF7GBBXY_TCGGCA_S24_L001_R1_001.unaln.bam 195500706 BAM unaligned CPTAC3 e6e5d26d-2f56-46ab-9d8c-e0b5cb2ffd62 6a2878c6f2c3fc8cf621644a76e9ca2e { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor' } C3N-02599.miRNA-Seq.T.hg38 C3N-02599 GBM miRNA-Seq tumor CPT0224840013 ec6c6d0e-2b20-4ad9-9cb1-5c7e7fc03453_mirnaseq_gdc_realn.bam 216716399 BAM harmonized CPTAC3 f8ddc7c6-3319-4b1a-b72d-53c3dd86f395 fc350138b7593157d216570b8fcebdf3 { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor' } -C3N-02599.RNA-Seq.chimeric.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 18d64b7a-d65d-4efa-9adf-014a52ea80a6.rna_seq.chimeric.gdc_realn.bam 24132624 BAM chimeric harmonized CPTAC3 fb55a9b5-e231-4bfb-9f2c-9396b191b40b f3cb4cd9e88cfde861a9e1746122ff98 { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor' } -C3N-02599.RNA-Seq.genomic.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 18d64b7a-d65d-4efa-9adf-014a52ea80a6.rna_seq.genomic.gdc_realn.bam 6978986048 BAM genomic harmonized CPTAC3 5726bd41-7e8c-4e7e-becd-9e077f590c1b beb92a3e26a324352f3637edc0682359 { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor' } -C3N-02599.RNA-Seq.R1_L005.T C3N-02599 GBM RNA-Seq tumor CPT0224840013 200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R1_001.fastq.gz 3286785831 FASTQ R1_L005 unaligned CPTAC3 48cfa054-e4e7-4707-8f4f-1464920cd330 183c5e235a9c00136eb7a9ac4b449744 { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor' } -C3N-02599.RNA-Seq.R2_L005.T C3N-02599 GBM RNA-Seq tumor CPT0224840013 200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R2_001.fastq.gz 3639513940 FASTQ R2_L005 unaligned CPTAC3 f34ce994-d55e-49cb-bb17-93e3a4874810 435d813baa812c7764a77ba5509cf851 { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor' } -C3N-02599.RNA-Seq.transcriptome.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 18d64b7a-d65d-4efa-9adf-014a52ea80a6.rna_seq.transcriptome.gdc_realn.bam 7259954841 BAM transcriptome harmonized CPTAC3 b5dd59c3-c7a0-47aa-88ec-2ea3b0daaacb 3e7444b9230e74c4d42ba0e9c439e2b9 { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor' } +C3N-02599.RNA-Seq.chimeric.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 3f73f935-e281-4705-a6d4-18123ec3a4d9.rna_seq.chimeric.gdc_realn.bam 24116823 BAM chimeric harmonized CPTAC3 8dc0c318-12cc-47da-8fb4-7d7c2ef1daa7 4df725a9bd9f96309ee229c08c6f4f38 { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor' } +C3N-02599.RNA-Seq.genomic.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 3f73f935-e281-4705-a6d4-18123ec3a4d9.rna_seq.genomic.gdc_realn.bam 6979980365 BAM genomic harmonized CPTAC3 267749f0-8796-49d9-9d9d-5640ff45d9d2 b48b9a5fc06d6a847146daec243cc4f0 { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor' } +C3N-02599.RNA-Seq.R1_L005.T C3N-02599 GBM RNA-Seq tumor CPT0224840013 200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R1_001.fastq.gz 3286785831 FASTQ R1_L005 unaligned CPTAC3 48cfa054-e4e7-4707-8f4f-1464920cd330 183c5e235a9c00136eb7a9ac4b449744 { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02599.RNA-Seq.R2_L005.T C3N-02599 GBM RNA-Seq tumor CPT0224840013 200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R2_001.fastq.gz 3639513940 FASTQ R2_L005 unaligned CPTAC3 f34ce994-d55e-49cb-bb17-93e3a4874810 435d813baa812c7764a77ba5509cf851 { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02599.RNA-Seq.transcriptome.T.hg38 C3N-02599 GBM RNA-Seq tumor CPT0224840013 3f73f935-e281-4705-a6d4-18123ec3a4d9.rna_seq.transcriptome.gdc_realn.bam 8384008486 BAM transcriptome harmonized CPTAC3 1a32ba3a-3b5f-4dc4-8d34-e730227e221e 2b6138f7b61d8562fd82a6f47e58e09e { 'aliquot_tag': 'ALQ_199a1073', 'gdc_sample_type': 'Primary Tumor' } C3N-02599.WGS.N C3N-02599 GBM WGS blood_normal CPT0224860002 CPT0224860002.WholeGenome.RP-2158.bam 24996003121 BAM aligned CPTAC3 474416f9-0b17-4e8b-8ebc-f81fbc3f399b 0ee5ef3b4fc3c1daeb44c0036180d6b3 { 'aliquot_tag': 'ALQ_d4642c4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02599.WGS.N.hg38 C3N-02599 GBM WGS blood_normal CPT0224860002 834e776f-c515-46ba-b94e-ae7afe7663ea_wgs_gdc_realn.bam 74853169740 BAM harmonized CPTAC3 68d465da-3999-4a59-8573-fe84d4170d38 53095a2d5416d2e7c9cfce94f52df618 { 'aliquot_tag': 'ALQ_d4642c4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02599.WGS.T C3N-02599 GBM WGS tumor CPT0224840006 CPT0224840006.WholeGenome.RP-2158.bam 23281634761 BAM aligned CPTAC3 632b83d0-1085-4038-a036-946722d426e8 4387845b184a7920ef67383b6b8ba58f { 'aliquot_tag': 'ALQ_70ebd5bd', 'gdc_sample_type': 'Primary Tumor' } @@ -31965,13 +34113,16 @@ C3N-02631.MethArray.Green.T C3N-02631 UCEC Methylation Array tumor CPT0181960007 C3N-02631.MethArray.Red.T C3N-02631 UCEC Methylation Array tumor CPT0181960007 203561450030_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 844c57ea-645a-4c82-b89f-3ce088195a8f d7359aff22f78544089807d810e2806f { 'aliquot_tag': 'ALQ_4c056a44', 'gdc_sample_type': 'Primary Tumor' } C3N-02631.miRNA-Seq.T C3N-02631 UCEC miRNA-Seq tumor CPT0181960010 190508_UNC31-K00269_0215_BH7FYKBBXY_CCAACA_S36_L004_R1_001.unaln.bam 173046508 BAM unaligned CPTAC3 62d16d52-db5d-4d6f-9eec-7da85e22851c 8eb16c55485ff91a3dfdc47130d2fb73 { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor' } C3N-02631.miRNA-Seq.T.hg38 C3N-02631 UCEC miRNA-Seq tumor CPT0181960010 2ad2eb08-3b2d-4025-8030-b3b162877f95_mirnaseq_gdc_realn.bam 197395959 BAM harmonized CPTAC3 522c5e65-3615-40f2-9e0e-7d102f58c06b dfcd5e6edd28a0f98697f85916bfb995 { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02631.RNA-Seq.chimeric.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 bd906c1b-f5fc-49c5-b193-ad99d202c648.rna_seq.chimeric.gdc_realn.bam 50868254 BAM chimeric harmonized CPTAC3 a229cd95-9090-42b0-bbdf-75dc23cad284 4c1f12d0e87e281d275ad2f062988957 { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02631.RNA-Seq.genomic.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 bd906c1b-f5fc-49c5-b193-ad99d202c648.rna_seq.genomic.gdc_realn.bam 10455829972 BAM genomic harmonized CPTAC3 1915a2a0-1471-47a1-ada8-575bffbecd19 9f886a05bfc99f4c14dd2feea8c0b56e { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02631.RNA-Seq.R1_L002.T C3N-02631 UCEC RNA-Seq tumor CPT0181960010 190523_UNC32-K00270_0176_BH7CW7BBXY_TCATCCTT-AGCGAGCT_S7_L002_R1_001.fastq.gz 5128385989 FASTQ R1_L002 unaligned CPTAC3 b817e43b-48e8-4cda-b993-5ea7428bdf5e 09ab6306dc60ea144fc1a77ee3e31f9e { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02631.RNA-Seq.R1_.T C3N-02631 UCEC RNA-Seq tumor CPT0353050001 20210729_P3_B8_WB7988-Plate3_S20_R1_001.fastq.gz 4642136949 FASTQ R1_ unaligned CPTAC3 64680036-719e-49bf-a651-840cc7c87ea7 a1f8a55964511ef54910db93cef08eec { 'aliquot_tag': 'ALQ_e7a5c817', 'gdc_sample_type': 'Primary Tumor' } -C3N-02631.RNA-Seq.R2_L002.T C3N-02631 UCEC RNA-Seq tumor CPT0181960010 190523_UNC32-K00270_0176_BH7CW7BBXY_TCATCCTT-AGCGAGCT_S7_L002_R2_001.fastq.gz 5777961856 FASTQ R2_L002 unaligned CPTAC3 4d7ddade-b86d-4a41-9cd3-27a97288cebe 425a8f3b6e6921c3b4d39bf883c100e5 { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02631.RNA-Seq.R2_.T C3N-02631 UCEC RNA-Seq tumor CPT0353050001 20210729_P3_B8_WB7988-Plate3_S20_R2_001.fastq.gz 4814916254 FASTQ R2_ unaligned CPTAC3 aadd2f47-382b-4aa1-a382-36d1c0d60b16 c2678e7c33c366144f9a89eb1edbba62 { 'aliquot_tag': 'ALQ_e7a5c817', 'gdc_sample_type': 'Primary Tumor' } -C3N-02631.RNA-Seq.transcriptome.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 bd906c1b-f5fc-49c5-b193-ad99d202c648.rna_seq.transcriptome.gdc_realn.bam 10575634198 BAM transcriptome harmonized CPTAC3 2ffb8bcf-7d24-42b7-a826-bd6c8cb598fe e8a863fd64da125b1f904a973d2238e1 { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02631.RNA-Seq.chimeric.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 f516e97b-07b7-434a-8636-1c4b266dffec.rna_seq.chimeric.gdc_realn.bam 50852580 BAM chimeric harmonized CPTAC3 fa77bb3f-1a22-4e31-8a3e-927d5d833a78 3750cbf67490b4205ba99772200dad4c { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02631.RNA-Seq.chimeric.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0353050001 e43a0b27-6cec-4c30-ac89-84c43f358f55.rna_seq.chimeric.gdc_realn.bam 198330909 BAM chimeric harmonized CPTAC3 aec80ae9-009b-453c-8d8b-dd4742e4671d 8cf3b81e925873574ceb37e8b2182e29 { 'aliquot_tag': 'ALQ_e7a5c817', 'gdc_sample_type': 'Primary Tumor' } +C3N-02631.RNA-Seq.genomic.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 f516e97b-07b7-434a-8636-1c4b266dffec.rna_seq.genomic.gdc_realn.bam 10456610181 BAM genomic harmonized CPTAC3 1e14009d-b921-47a0-98e6-f2ad55a5440f 0752b313bf339677cacae3100af2401f { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02631.RNA-Seq.genomic.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0353050001 e43a0b27-6cec-4c30-ac89-84c43f358f55.rna_seq.genomic.gdc_realn.bam 8595821724 BAM genomic harmonized CPTAC3 245c2f7f-c1e5-4f5a-b740-92ce920f0917 bb6e742b38d3c578ceee9a9ec012df39 { 'aliquot_tag': 'ALQ_e7a5c817', 'gdc_sample_type': 'Primary Tumor' } +C3N-02631.RNA-Seq.R1_L002.T C3N-02631 UCEC RNA-Seq tumor CPT0181960010 190523_UNC32-K00270_0176_BH7CW7BBXY_TCATCCTT-AGCGAGCT_S7_L002_R1_001.fastq.gz 5128385989 FASTQ R1_L002 unaligned CPTAC3 b817e43b-48e8-4cda-b993-5ea7428bdf5e 09ab6306dc60ea144fc1a77ee3e31f9e { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02631.RNA-Seq.R2_L002.T C3N-02631 UCEC RNA-Seq tumor CPT0181960010 190523_UNC32-K00270_0176_BH7CW7BBXY_TCATCCTT-AGCGAGCT_S7_L002_R2_001.fastq.gz 5777961856 FASTQ R2_L002 unaligned CPTAC3 4d7ddade-b86d-4a41-9cd3-27a97288cebe 425a8f3b6e6921c3b4d39bf883c100e5 { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02631.RNA-Seq.T C3N-02631 UCEC RNA-Seq tumor CPT0353050001 20210729_P3_B8_WB7988-Plate3_S20_R1_001.fastq.gz 4642136949 FASTQ unaligned CPTAC3 64680036-719e-49bf-a651-840cc7c87ea7 a1f8a55964511ef54910db93cef08eec +C3N-02631.RNA-Seq.T C3N-02631 UCEC RNA-Seq tumor CPT0353050001 20210729_P3_B8_WB7988-Plate3_S20_R2_001.fastq.gz 4814916254 FASTQ unaligned CPTAC3 aadd2f47-382b-4aa1-a382-36d1c0d60b16 c2678e7c33c366144f9a89eb1edbba62 +C3N-02631.RNA-Seq.transcriptome.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0181960010 f516e97b-07b7-434a-8636-1c4b266dffec.rna_seq.transcriptome.gdc_realn.bam 12105429342 BAM transcriptome harmonized CPTAC3 7b6303ee-84c7-4a68-9daf-bcc12d55fc46 0efc6530888979a8f5e1f2728f54528a { 'aliquot_tag': 'ALQ_cb7acea6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02631.RNA-Seq.transcriptome.T.hg38 C3N-02631 UCEC RNA-Seq tumor CPT0353050001 e43a0b27-6cec-4c30-ac89-84c43f358f55.rna_seq.transcriptome.gdc_realn.bam 3403640347 BAM transcriptome harmonized CPTAC3 a4470ceb-db90-4d13-a340-ac678ef61e12 99ba3cdf085c9ba996db694d08f2858c { 'aliquot_tag': 'ALQ_e7a5c817', 'gdc_sample_type': 'Primary Tumor' } C3N-02631.WGS.N C3N-02631 UCEC WGS blood_normal CPT0182010002 CPT0182010002.WholeGenome.RP-1303.bam 71191712013 BAM aligned CPTAC3 4a5a3ff5-b326-4518-877b-13c262344f40 f559eceb8562c237c4f336f8d3401cf2 { 'aliquot_tag': 'ALQ_98a8098e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02631.WGS.N.hg38 C3N-02631 UCEC WGS blood_normal CPT0182010002 e3f73e35-fe83-48f7-9a6a-2d49f4b46a7d_wgs_gdc_realn.bam 103087909289 BAM harmonized CPTAC3 df09c8cd-57a3-4c2e-9449-4178ea2e0a25 ae9e268a34c56261591892eedd362a98 { 'aliquot_tag': 'ALQ_98a8098e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02631.WGS.T C3N-02631 UCEC WGS tumor CPT0181960007 CPT0181960007.WholeGenome.RP-1303.bam 64176906912 BAM aligned CPTAC3 69c75d77-e36f-4f38-acd6-ad646c2fd2ca 98c7a9caef15715a2b540be9e23bbbff { 'aliquot_tag': 'ALQ_4c056a44', 'gdc_sample_type': 'Primary Tumor' } @@ -31984,13 +34135,16 @@ C3N-02632.MethArray.Green.T C3N-02632 UCEC Methylation Array tumor CPT0182020007 C3N-02632.MethArray.Red.T C3N-02632 UCEC Methylation Array tumor CPT0182020007 203561620040_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 d03a4907-4770-4af4-9699-ad0b257b4ca2 604207a442e14b99da9d11980888b85f { 'aliquot_tag': 'ALQ_af6287d1', 'gdc_sample_type': 'Primary Tumor' } C3N-02632.miRNA-Seq.T C3N-02632 UCEC miRNA-Seq tumor CPT0182020010 190508_UNC31-K00269_0215_BH7FYKBBXY_CGGAAT_S37_L004_R1_001.unaln.bam 250826802 BAM unaligned CPTAC3 a82e91f9-aa9a-41c2-82eb-f366a54cd1cb 4a29558524bc48ad9a00f37aac2131c9 { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor' } C3N-02632.miRNA-Seq.T.hg38 C3N-02632 UCEC miRNA-Seq tumor CPT0182020010 fa9642a2-cdca-4e3a-ad10-8089e6d94464_mirnaseq_gdc_realn.bam 289195071 BAM harmonized CPTAC3 6cf34941-4d84-481f-a6ff-5ac8568b5e37 f105dd26b9bcffa367e39cc3983ab3cc { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor' } -C3N-02632.RNA-Seq.chimeric.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 3050fd78-1e24-4399-9675-b326441f5c65.rna_seq.chimeric.gdc_realn.bam 31352225 BAM chimeric harmonized CPTAC3 139fdd53-df65-4399-b86d-e7ed04ea6323 53d2c2e4e3d0a8f1e8a0b18fe228fd6c { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor' } -C3N-02632.RNA-Seq.genomic.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 3050fd78-1e24-4399-9675-b326441f5c65.rna_seq.genomic.gdc_realn.bam 7109222632 BAM genomic harmonized CPTAC3 d674b897-55bd-4dce-bf89-45fd1503e835 0881de73b92d364266969d58e3a75322 { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor' } -C3N-02632.RNA-Seq.R1_L001.T C3N-02632 UCEC RNA-Seq tumor CPT0182020010 190523_UNC32-K00270_0176_BH7CW7BBXY_AGGTTATA-CAGTTCCG_S3_L001_R1_001.fastq.gz 3415264967 FASTQ R1_L001 unaligned CPTAC3 1f16aa6a-8d94-4166-9256-c5feb6f52b4e 2f87697196deee9e8fcfbdf4f8d151de { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor' } -C3N-02632.RNA-Seq.R1_.T C3N-02632 UCEC RNA-Seq tumor CPT0353070001 20210714_P1_A7_WB7988_plate1_S7_R1_001.fastq.gz 4137077202 FASTQ R1_ unaligned CPTAC3 f7689084-6616-4197-bed3-c7a7e7ecc1e5 dc7a48ebab3966eac86c30a0a99d1038 { 'aliquot_tag': 'ALQ_9d659b77', 'gdc_sample_type': 'Primary Tumor' } -C3N-02632.RNA-Seq.R2_L001.T C3N-02632 UCEC RNA-Seq tumor CPT0182020010 190523_UNC32-K00270_0176_BH7CW7BBXY_AGGTTATA-CAGTTCCG_S3_L001_R2_001.fastq.gz 3902068531 FASTQ R2_L001 unaligned CPTAC3 7cc71d12-47fa-4e6d-ba71-c4d73d11bf7b 3337996ee7c102190386beff04d67e16 { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor' } -C3N-02632.RNA-Seq.R2_.T C3N-02632 UCEC RNA-Seq tumor CPT0353070001 20210714_P1_A7_WB7988_plate1_S7_R2_001.fastq.gz 4423394746 FASTQ R2_ unaligned CPTAC3 793f9aac-2b9e-4621-bc29-2ba889130e0a 5939e428d03c86db4ee04972b04c8f30 { 'aliquot_tag': 'ALQ_9d659b77', 'gdc_sample_type': 'Primary Tumor' } -C3N-02632.RNA-Seq.transcriptome.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 3050fd78-1e24-4399-9675-b326441f5c65.rna_seq.transcriptome.gdc_realn.bam 7311519276 BAM transcriptome harmonized CPTAC3 077b6ba7-d595-48c2-84ba-041871ceebac 9117ecce8aec122a54a19a5c1541f01a { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor' } +C3N-02632.RNA-Seq.chimeric.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 0ad71f01-3278-4a44-b08b-d9c65ef7301b.rna_seq.chimeric.gdc_realn.bam 31342399 BAM chimeric harmonized CPTAC3 2be2a066-6eac-414f-8ed6-8c382e5c7ed0 009a1c73852ebaa9b2ccd9b23e386437 { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor' } +C3N-02632.RNA-Seq.chimeric.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0353070001 b98c7f60-7e41-4028-9172-6f7130bb4816.rna_seq.chimeric.gdc_realn.bam 119140328 BAM chimeric harmonized CPTAC3 60271d4d-b1ad-48cc-abc8-7f2569f7c390 565d8693632f4a7f21b47812490078ce { 'aliquot_tag': 'ALQ_9d659b77', 'gdc_sample_type': 'Primary Tumor' } +C3N-02632.RNA-Seq.genomic.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 0ad71f01-3278-4a44-b08b-d9c65ef7301b.rna_seq.genomic.gdc_realn.bam 7110081278 BAM genomic harmonized CPTAC3 59d1000e-5e17-4014-901c-696cc22ffeac b0b388fc8c6fb53094234db2bc4296ba { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor' } +C3N-02632.RNA-Seq.genomic.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0353070001 b98c7f60-7e41-4028-9172-6f7130bb4816.rna_seq.genomic.gdc_realn.bam 7658445606 BAM genomic harmonized CPTAC3 a62b2538-02df-459f-a182-c1231f33c691 77a840c73480c62e86a4b282fc29fbd0 { 'aliquot_tag': 'ALQ_9d659b77', 'gdc_sample_type': 'Primary Tumor' } +C3N-02632.RNA-Seq.R1_L001.T C3N-02632 UCEC RNA-Seq tumor CPT0182020010 190523_UNC32-K00270_0176_BH7CW7BBXY_AGGTTATA-CAGTTCCG_S3_L001_R1_001.fastq.gz 3415264967 FASTQ R1_L001 unaligned CPTAC3 1f16aa6a-8d94-4166-9256-c5feb6f52b4e 2f87697196deee9e8fcfbdf4f8d151de { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02632.RNA-Seq.R2_L001.T C3N-02632 UCEC RNA-Seq tumor CPT0182020010 190523_UNC32-K00270_0176_BH7CW7BBXY_AGGTTATA-CAGTTCCG_S3_L001_R2_001.fastq.gz 3902068531 FASTQ R2_L001 unaligned CPTAC3 7cc71d12-47fa-4e6d-ba71-c4d73d11bf7b 3337996ee7c102190386beff04d67e16 { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02632.RNA-Seq.T C3N-02632 UCEC RNA-Seq tumor CPT0353070001 20210714_P1_A7_WB7988_plate1_S7_R1_001.fastq.gz 4137077202 FASTQ unaligned CPTAC3 f7689084-6616-4197-bed3-c7a7e7ecc1e5 dc7a48ebab3966eac86c30a0a99d1038 +C3N-02632.RNA-Seq.T C3N-02632 UCEC RNA-Seq tumor CPT0353070001 20210714_P1_A7_WB7988_plate1_S7_R2_001.fastq.gz 4423394746 FASTQ unaligned CPTAC3 793f9aac-2b9e-4621-bc29-2ba889130e0a 5939e428d03c86db4ee04972b04c8f30 +C3N-02632.RNA-Seq.transcriptome.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0182020010 0ad71f01-3278-4a44-b08b-d9c65ef7301b.rna_seq.transcriptome.gdc_realn.bam 8431013885 BAM transcriptome harmonized CPTAC3 adcab6f2-1bf5-4ff9-b5cb-7be3f64efd04 e1308e41480c6a5c693cb199fd3c20b5 { 'aliquot_tag': 'ALQ_281d2333', 'gdc_sample_type': 'Primary Tumor' } +C3N-02632.RNA-Seq.transcriptome.T.hg38 C3N-02632 UCEC RNA-Seq tumor CPT0353070001 b98c7f60-7e41-4028-9172-6f7130bb4816.rna_seq.transcriptome.gdc_realn.bam 3883758530 BAM transcriptome harmonized CPTAC3 87759341-cc30-4ce5-b663-9a126409e444 53f17ffaf6c3b858a9afaa481f34005d { 'aliquot_tag': 'ALQ_9d659b77', 'gdc_sample_type': 'Primary Tumor' } C3N-02632.WGS.N C3N-02632 UCEC WGS blood_normal CPT0182060002 CPT0182060002.WholeGenome.RP-1303.bam 55782898233 BAM aligned CPTAC3 43ed19cd-ad45-452c-a9cd-81935661b0ac bdf2c2a8748d75e98f3fddcad1035839 { 'aliquot_tag': 'ALQ_2a88d59e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02632.WGS.N.hg38 C3N-02632 UCEC WGS blood_normal CPT0182060002 fcc5f63d-4c85-41d0-b104-9d2ea5ba075b_wgs_gdc_realn.bam 81865411035 BAM harmonized CPTAC3 8f290dc8-ddeb-469e-a206-e684a6d46bff 63b3051d65557c9c585f905798f5df90 { 'aliquot_tag': 'ALQ_2a88d59e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02632.WGS.T C3N-02632 UCEC WGS tumor CPT0182020007 CPT0182020007.WholeGenome.RP-1303.bam 81508660341 BAM aligned CPTAC3 663d75ad-ff59-41da-a372-fb043e6aad1e c7e4b6f8a2759ee55f6de7fb5b67ca21 { 'aliquot_tag': 'ALQ_af6287d1', 'gdc_sample_type': 'Primary Tumor' } @@ -32003,13 +34157,16 @@ C3N-02635.MethArray.Green.T C3N-02635 UCEC Methylation Array tumor CPT0182070007 C3N-02635.MethArray.Red.T C3N-02635 UCEC Methylation Array tumor CPT0182070007 203561620049_R06C01_Red.idat 13676231 IDAT Red NA CPTAC3 023ac084-13fd-400a-82fd-828a611cbd78 7eb27b987f2901526f7372523d47b5f2 { 'aliquot_tag': 'ALQ_678208a1', 'gdc_sample_type': 'Primary Tumor' } C3N-02635.miRNA-Seq.T C3N-02635 UCEC miRNA-Seq tumor CPT0182070010 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTCAA_S13_L001_R1_001.unaln.bam 209090682 BAM unaligned CPTAC3 10d4e0ce-d873-45ad-bee4-58e0759e6509 c354fee5285dcc87a45d91caaafd653c { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor' } C3N-02635.miRNA-Seq.T.hg38 C3N-02635 UCEC miRNA-Seq tumor CPT0182070010 79340e56-2474-4449-87fd-5b1eb6fd1096_mirnaseq_gdc_realn.bam 232822963 BAM harmonized CPTAC3 6b1e0e65-c63d-4ccb-b038-20ede1fd92bd dbb5891c9d829e0c40979520b56856d0 { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor' } -C3N-02635.RNA-Seq.chimeric.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 c63486b3-d308-4cbf-b98e-0e0a4dc1bbec.rna_seq.chimeric.gdc_realn.bam 41793671 BAM chimeric harmonized CPTAC3 da2d0ea4-4ad9-40b0-8fb4-054e70da1b5c 2ad125aff77f32e25d1754f2bd291415 { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor' } -C3N-02635.RNA-Seq.genomic.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 c63486b3-d308-4cbf-b98e-0e0a4dc1bbec.rna_seq.genomic.gdc_realn.bam 10204250528 BAM genomic harmonized CPTAC3 cd2dd590-f570-43ee-a384-b6fb89b75f0d 5d1297f396398cc062cb9d3a79cd2fdf { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor' } -C3N-02635.RNA-Seq.R1_L005.T C3N-02635 UCEC RNA-Seq tumor CPT0182070010 190522_UNC31-K00269_0217_AH7F5MBBXY_CCAAGTCT-AAGGATGA_S32_L005_R1_001.fastq.gz 4970384764 FASTQ R1_L005 unaligned CPTAC3 9fbae31c-9106-4246-b046-90893a57fc4e 24667d9de62a0a557b28542e55700a29 { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor' } -C3N-02635.RNA-Seq.R1_.T C3N-02635 UCEC RNA-Seq tumor CPT0353110001 20210729_P3_C1_WB7988-Plate3_S25_R1_001.fastq.gz 4371602771 FASTQ R1_ unaligned CPTAC3 ffaaa415-c2e6-4105-8b98-118b251eff9c 818484738635f6216c59396dc351c226 { 'aliquot_tag': 'ALQ_d979bd72', 'gdc_sample_type': 'Primary Tumor' } -C3N-02635.RNA-Seq.R2_L005.T C3N-02635 UCEC RNA-Seq tumor CPT0182070010 190522_UNC31-K00269_0217_AH7F5MBBXY_CCAAGTCT-AAGGATGA_S32_L005_R2_001.fastq.gz 5725054804 FASTQ R2_L005 unaligned CPTAC3 c3a418a6-fe2a-484f-8094-eb9bfb0912c3 8f4288469924b85f411507b56b70ed1e { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor' } -C3N-02635.RNA-Seq.R2_.T C3N-02635 UCEC RNA-Seq tumor CPT0353110001 20210729_P3_C1_WB7988-Plate3_S25_R2_001.fastq.gz 4531988342 FASTQ R2_ unaligned CPTAC3 32b68fb6-e6ff-4fef-a1a8-943c917400e3 9d34da620d0759e07b4c39e50940b4a9 { 'aliquot_tag': 'ALQ_d979bd72', 'gdc_sample_type': 'Primary Tumor' } -C3N-02635.RNA-Seq.transcriptome.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 c63486b3-d308-4cbf-b98e-0e0a4dc1bbec.rna_seq.transcriptome.gdc_realn.bam 12216169289 BAM transcriptome harmonized CPTAC3 339584dc-6b8a-4b1b-ac71-ebec48c2bb9d f981c6d67b30af8da941a5ea372a08c9 { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor' } +C3N-02635.RNA-Seq.chimeric.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 df680e79-f247-4a87-9e2b-81479b781cd9.rna_seq.chimeric.gdc_realn.bam 41777003 BAM chimeric harmonized CPTAC3 769401a5-c77d-471c-8daf-e672102c83af 892987b6e5e8fe57651ada8806fc7f1a { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor' } +C3N-02635.RNA-Seq.chimeric.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0353110001 654ac333-fe7a-4ee9-9f5e-af865f31b0d8.rna_seq.chimeric.gdc_realn.bam 126056275 BAM chimeric harmonized CPTAC3 17689245-4364-4c7e-a5c1-c8595f71e8e9 d1ea5c566a55f7d6bfe1fb28b428617c { 'aliquot_tag': 'ALQ_d979bd72', 'gdc_sample_type': 'Primary Tumor' } +C3N-02635.RNA-Seq.genomic.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 df680e79-f247-4a87-9e2b-81479b781cd9.rna_seq.genomic.gdc_realn.bam 10205714657 BAM genomic harmonized CPTAC3 968393b2-8d06-4ec0-94b7-e2a0a89cbf8a 8817b700ade3a8b16b7cbb5727e3f147 { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor' } +C3N-02635.RNA-Seq.genomic.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0353110001 654ac333-fe7a-4ee9-9f5e-af865f31b0d8.rna_seq.genomic.gdc_realn.bam 6324272588 BAM genomic harmonized CPTAC3 093c597c-8b3a-4082-ae26-12aadae240d2 78aa5617112cc264bc953542e3f05d8b { 'aliquot_tag': 'ALQ_d979bd72', 'gdc_sample_type': 'Primary Tumor' } +C3N-02635.RNA-Seq.R1_L005.T C3N-02635 UCEC RNA-Seq tumor CPT0182070010 190522_UNC31-K00269_0217_AH7F5MBBXY_CCAAGTCT-AAGGATGA_S32_L005_R1_001.fastq.gz 4970384764 FASTQ R1_L005 unaligned CPTAC3 9fbae31c-9106-4246-b046-90893a57fc4e 24667d9de62a0a557b28542e55700a29 { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02635.RNA-Seq.R2_L005.T C3N-02635 UCEC RNA-Seq tumor CPT0182070010 190522_UNC31-K00269_0217_AH7F5MBBXY_CCAAGTCT-AAGGATGA_S32_L005_R2_001.fastq.gz 5725054804 FASTQ R2_L005 unaligned CPTAC3 c3a418a6-fe2a-484f-8094-eb9bfb0912c3 8f4288469924b85f411507b56b70ed1e { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02635.RNA-Seq.T C3N-02635 UCEC RNA-Seq tumor CPT0353110001 20210729_P3_C1_WB7988-Plate3_S25_R1_001.fastq.gz 4371602771 FASTQ unaligned CPTAC3 ffaaa415-c2e6-4105-8b98-118b251eff9c 818484738635f6216c59396dc351c226 +C3N-02635.RNA-Seq.T C3N-02635 UCEC RNA-Seq tumor CPT0353110001 20210729_P3_C1_WB7988-Plate3_S25_R2_001.fastq.gz 4531988342 FASTQ unaligned CPTAC3 32b68fb6-e6ff-4fef-a1a8-943c917400e3 9d34da620d0759e07b4c39e50940b4a9 +C3N-02635.RNA-Seq.transcriptome.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0182070010 df680e79-f247-4a87-9e2b-81479b781cd9.rna_seq.transcriptome.gdc_realn.bam 14011844474 BAM transcriptome harmonized CPTAC3 d670b17f-22a1-4caa-bbb7-56ed1f5e63a4 6f8945aff0fd9dbbf07f3ab1e34611bc { 'aliquot_tag': 'ALQ_e0fdac43', 'gdc_sample_type': 'Primary Tumor' } +C3N-02635.RNA-Seq.transcriptome.T.hg38 C3N-02635 UCEC RNA-Seq tumor CPT0353110001 654ac333-fe7a-4ee9-9f5e-af865f31b0d8.rna_seq.transcriptome.gdc_realn.bam 4373250118 BAM transcriptome harmonized CPTAC3 1db0100a-6174-4c8d-a73f-fa886ab1393d cfa5a00a1d2879475bc915b24cacc8a4 { 'aliquot_tag': 'ALQ_d979bd72', 'gdc_sample_type': 'Primary Tumor' } C3N-02635.WGS.N C3N-02635 UCEC WGS blood_normal CPT0182130002 CPT0182130002.WholeGenome.RP-1303.bam 58388704721 BAM aligned CPTAC3 b7c5f0d6-4923-4170-8d60-b51c7edc7c24 3ab77bbe7de5cef26792de185dd77177 { 'aliquot_tag': 'ALQ_2934894b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02635.WGS.N.hg38 C3N-02635 UCEC WGS blood_normal CPT0182130002 4720b4fd-df6b-43ad-b211-636f3dc15cd3_wgs_gdc_realn.bam 85215921322 BAM harmonized CPTAC3 f2ba4382-5fdf-4ea0-9a3e-547241605603 64b849937f3e64aafc1a8d4bf882a633 { 'aliquot_tag': 'ALQ_2934894b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02635.WGS.T C3N-02635 UCEC WGS tumor CPT0182070007 CPT0182070007.WholeGenome.RP-1303.bam 70186343500 BAM aligned CPTAC3 f16fbf6d-e823-4efb-9618-049412f444db 5815906fadbac013245b1a9d1134e3e2 { 'aliquot_tag': 'ALQ_678208a1', 'gdc_sample_type': 'Primary Tumor' } @@ -32022,13 +34179,16 @@ C3N-02636.MethArray.Green.T C3N-02636 UCEC Methylation Array tumor CPT0182150006 C3N-02636.MethArray.Red.T C3N-02636 UCEC Methylation Array tumor CPT0182150006 203561620012_R04C01_Red.idat 13676211 IDAT Red NA CPTAC3 e04fad7f-cb79-4edf-a98e-29007ff601c5 d112e8c422becf8269920fb175ae8f06 { 'aliquot_tag': 'ALQ_a119b8f2', 'gdc_sample_type': 'Primary Tumor' } C3N-02636.miRNA-Seq.T C3N-02636 UCEC miRNA-Seq tumor CPT0182150009 190813_UNC32-K00270_0196_AH5MCWBBXY_AGTCAA_S42_L002_R1_001.unaln.bam 149722495 BAM unaligned CPTAC3 fb2d6b14-bd65-4a4b-9065-531b7fcc8ced 70ac41fe85d8f4285db4bb3f8eb7d856 { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor' } C3N-02636.miRNA-Seq.T.hg38 C3N-02636 UCEC miRNA-Seq tumor CPT0182150009 eca6d6e9-6c4a-4a13-80f3-edfaf83c246d_mirnaseq_gdc_realn.bam 172033558 BAM harmonized CPTAC3 114f40bc-9112-47f7-8249-8fdd6d915343 bbb5faf367de061890a8687c7b11ea1a { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor' } -C3N-02636.RNA-Seq.chimeric.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 66d3321a-5c7a-42df-aba7-ef2626a4f252.rna_seq.chimeric.gdc_realn.bam 276072270 BAM chimeric harmonized CPTAC3 3c8af5dd-d20b-4569-ba07-3379d93f881a e982c0d42433d8b537994a90c7a766e6 { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor' } -C3N-02636.RNA-Seq.genomic.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 66d3321a-5c7a-42df-aba7-ef2626a4f252.rna_seq.genomic.gdc_realn.bam 8157616589 BAM genomic harmonized CPTAC3 22654c0a-ba6a-4caa-907c-f19688f61efb c0daf069be14148d866eb3d6f3ed7ff9 { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor' } -C3N-02636.RNA-Seq.R1_L006.T C3N-02636 UCEC RNA-Seq tumor CPT0182150009 190717_UNC31-K00269_0233_BH7HG5BBXY_CGGAACTG-CACTACGA_S20_L006_R1_001.fastq.gz 3095148371 FASTQ R1_L006 unaligned CPTAC3 eaf9eb0b-a6d4-46e4-a16b-236286596dac b632dbd12df413c4fc9e12e04cc59685 { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor' } -C3N-02636.RNA-Seq.R1_.T C3N-02636 UCEC RNA-Seq tumor CPT0353150001 20210714_P1_H12_WB7988_plate1_S95_R1_001.fastq.gz 4981876854 FASTQ R1_ unaligned CPTAC3 1327fe93-4b6d-4284-87f2-77eef733ced2 bbc6ac2668246ea33b021cba98e366d6 { 'aliquot_tag': 'ALQ_2cf91bb2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02636.RNA-Seq.R2_L006.T C3N-02636 UCEC RNA-Seq tumor CPT0182150009 190717_UNC31-K00269_0233_BH7HG5BBXY_CGGAACTG-CACTACGA_S20_L006_R2_001.fastq.gz 3181532702 FASTQ R2_L006 unaligned CPTAC3 d22260cd-c12a-4fac-9d4a-a594d060492a 015cdab99527ec9f3709874899c732e9 { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor' } -C3N-02636.RNA-Seq.R2_.T C3N-02636 UCEC RNA-Seq tumor CPT0353150001 20210714_P1_H12_WB7988_plate1_S95_R2_001.fastq.gz 5155550012 FASTQ R2_ unaligned CPTAC3 0335ed15-cc78-4232-806e-3d87e8089054 5a31bbfdbdb6c8a2edd9175f38242d4c { 'aliquot_tag': 'ALQ_2cf91bb2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02636.RNA-Seq.transcriptome.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 66d3321a-5c7a-42df-aba7-ef2626a4f252.rna_seq.transcriptome.gdc_realn.bam 5369571534 BAM transcriptome harmonized CPTAC3 0adc962d-0b46-4e6e-88ea-7d883c0de7b0 b3d485081224ce0c7dea88b040e14438 { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor' } +C3N-02636.RNA-Seq.chimeric.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 c5096331-433e-4020-8a34-c9d6e4963a6e.rna_seq.chimeric.gdc_realn.bam 276032198 BAM chimeric harmonized CPTAC3 d5cae38d-d7a5-4fc6-9b35-93af5a6ac651 f81e6522a98cf71b30bb49c97055a390 { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor' } +C3N-02636.RNA-Seq.chimeric.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0353150001 d3c83da5-d57c-48b6-85a6-32d4bf1905dd.rna_seq.chimeric.gdc_realn.bam 167830669 BAM chimeric harmonized CPTAC3 83db4c6e-9b8d-4ea9-b623-e1c579f649ae 02f6959f42b74bd51c2d02958c0b90b4 { 'aliquot_tag': 'ALQ_2cf91bb2', 'gdc_sample_type': 'Primary Tumor' } +C3N-02636.RNA-Seq.genomic.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 c5096331-433e-4020-8a34-c9d6e4963a6e.rna_seq.genomic.gdc_realn.bam 8158293458 BAM genomic harmonized CPTAC3 019ddb8e-d313-49c5-93e9-7f10b933fe6f bfc9ab3525e8ae7e18a78cc2dd49defa { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor' } +C3N-02636.RNA-Seq.genomic.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0353150001 d3c83da5-d57c-48b6-85a6-32d4bf1905dd.rna_seq.genomic.gdc_realn.bam 7817837155 BAM genomic harmonized CPTAC3 bb803f61-c1f5-4836-8fd9-3169e79ef164 08e4f524779da633eb92c58981e5a3cf { 'aliquot_tag': 'ALQ_2cf91bb2', 'gdc_sample_type': 'Primary Tumor' } +C3N-02636.RNA-Seq.R1_L006.T C3N-02636 UCEC RNA-Seq tumor CPT0182150009 190717_UNC31-K00269_0233_BH7HG5BBXY_CGGAACTG-CACTACGA_S20_L006_R1_001.fastq.gz 3095148371 FASTQ R1_L006 unaligned CPTAC3 eaf9eb0b-a6d4-46e4-a16b-236286596dac b632dbd12df413c4fc9e12e04cc59685 { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02636.RNA-Seq.R2_L006.T C3N-02636 UCEC RNA-Seq tumor CPT0182150009 190717_UNC31-K00269_0233_BH7HG5BBXY_CGGAACTG-CACTACGA_S20_L006_R2_001.fastq.gz 3181532702 FASTQ R2_L006 unaligned CPTAC3 d22260cd-c12a-4fac-9d4a-a594d060492a 015cdab99527ec9f3709874899c732e9 { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02636.RNA-Seq.T C3N-02636 UCEC RNA-Seq tumor CPT0353150001 20210714_P1_H12_WB7988_plate1_S95_R1_001.fastq.gz 4981876854 FASTQ unaligned CPTAC3 1327fe93-4b6d-4284-87f2-77eef733ced2 bbc6ac2668246ea33b021cba98e366d6 +C3N-02636.RNA-Seq.T C3N-02636 UCEC RNA-Seq tumor CPT0353150001 20210714_P1_H12_WB7988_plate1_S95_R2_001.fastq.gz 5155550012 FASTQ unaligned CPTAC3 0335ed15-cc78-4232-806e-3d87e8089054 5a31bbfdbdb6c8a2edd9175f38242d4c +C3N-02636.RNA-Seq.transcriptome.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0182150009 c5096331-433e-4020-8a34-c9d6e4963a6e.rna_seq.transcriptome.gdc_realn.bam 6087641366 BAM transcriptome harmonized CPTAC3 232c9f36-8cd5-4d8f-909e-d6e1231980c7 1c26bce189635d3aca20f0ddbe105b47 { 'aliquot_tag': 'ALQ_31a6a563', 'gdc_sample_type': 'Primary Tumor' } +C3N-02636.RNA-Seq.transcriptome.T.hg38 C3N-02636 UCEC RNA-Seq tumor CPT0353150001 d3c83da5-d57c-48b6-85a6-32d4bf1905dd.rna_seq.transcriptome.gdc_realn.bam 3972745117 BAM transcriptome harmonized CPTAC3 16ad6a2c-149a-46ff-9819-6b86d7339f03 1da480fbb249c371142e1486fe12ba92 { 'aliquot_tag': 'ALQ_2cf91bb2', 'gdc_sample_type': 'Primary Tumor' } C3N-02636.WGS.N C3N-02636 UCEC WGS blood_normal CPT0182200002 CPT0182200002.WholeGenome.RP-1303.bam 64785521804 BAM aligned CPTAC3 e0eb7713-78f8-4356-9ff9-d8b30a90b56c baa4c43093a2b21961754fa465da31d2 { 'aliquot_tag': 'ALQ_e8008135', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02636.WGS.N.hg38 C3N-02636 UCEC WGS blood_normal CPT0182200002 a719c0b5-a7fe-43fb-9701-a4ce7dc1e7c9_wgs_gdc_realn.bam 93196010994 BAM harmonized CPTAC3 1aa1192d-e409-49fc-b05c-043968506b95 f3c6357dc42a10cc3a88bec70111e7d6 { 'aliquot_tag': 'ALQ_e8008135', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02636.WGS.T C3N-02636 UCEC WGS tumor CPT0182150006 CPT0182150006.WholeGenome.RP-1303.bam 67507754105 BAM aligned CPTAC3 2df91048-9845-488a-87cd-b29034a67de1 cd22dfe15adbb657d4ce94acff0b5efe { 'aliquot_tag': 'ALQ_a119b8f2', 'gdc_sample_type': 'Primary Tumor' } @@ -32041,13 +34201,16 @@ C3N-02637.MethArray.Green.T C3N-02637 UCEC Methylation Array tumor CPT0182210007 C3N-02637.MethArray.Red.T C3N-02637 UCEC Methylation Array tumor CPT0182210007 203561450006_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 4b0241d9-1057-4a16-8adb-e54a2f742583 f2d38b6bd5a7b56be469f8b78e4f803f { 'aliquot_tag': 'ALQ_a50a5c0a', 'gdc_sample_type': 'Primary Tumor' } C3N-02637.miRNA-Seq.T C3N-02637 UCEC miRNA-Seq tumor CPT0182210010 190508_UNC31-K00269_0215_BH7FYKBBXY_ATGAGC_S26_L004_R1_001.unaln.bam 181775593 BAM unaligned CPTAC3 b254bb3f-366f-442d-a9d8-8fb193dc04b8 f00b575c37fa144ca9167377bee5248e { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor' } C3N-02637.miRNA-Seq.T.hg38 C3N-02637 UCEC miRNA-Seq tumor CPT0182210010 9d1ec7b1-3121-4e72-bc72-616be92891aa_mirnaseq_gdc_realn.bam 206839585 BAM harmonized CPTAC3 a27cf41d-72ab-4573-b8b6-f545df767631 d13fbf2a8aebe9b16157b3b7a797ca60 { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02637.RNA-Seq.chimeric.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 9e88e48e-ba14-45c3-a380-3441a74ee987.rna_seq.chimeric.gdc_realn.bam 46106671 BAM chimeric harmonized CPTAC3 2244de26-91e3-4dd7-b560-54e9b0cc91d5 161cb9d22c9dfc77858621f97aca9c1f { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02637.RNA-Seq.genomic.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 9e88e48e-ba14-45c3-a380-3441a74ee987.rna_seq.genomic.gdc_realn.bam 10854463859 BAM genomic harmonized CPTAC3 273d1e3f-bba9-437e-8c11-4738a14f17e4 837e340c3b0b4c84626c140ad3b8e736 { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02637.RNA-Seq.R1_L004.T C3N-02637 UCEC RNA-Seq tumor CPT0182210010 190523_UNC32-K00270_0176_BH7CW7BBXY_TGGCCGGT-TAGAGCGC_S14_L004_R1_001.fastq.gz 5134029896 FASTQ R1_L004 unaligned CPTAC3 c180a005-af10-416f-8c52-6a1305d7e7ca acd25610cf9a65a6420f4658ecedbd5a { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02637.RNA-Seq.R1_.T C3N-02637 UCEC RNA-Seq tumor CPT0353170001 20210723_P2_G8_WB7988-plate2_S80_R1_001.fastq.gz 4387379633 FASTQ R1_ unaligned CPTAC3 8f1cf5e9-e989-4e84-a8e3-30a2cb6e3c41 0a3d7f75dc7b19c82611197b48b72e82 { 'aliquot_tag': 'ALQ_563948d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02637.RNA-Seq.R2_L004.T C3N-02637 UCEC RNA-Seq tumor CPT0182210010 190523_UNC32-K00270_0176_BH7CW7BBXY_TGGCCGGT-TAGAGCGC_S14_L004_R2_001.fastq.gz 6015527868 FASTQ R2_L004 unaligned CPTAC3 37c97a88-9e12-48e9-be31-e8d260abcf7d 95cea3b5e54e0c828ca259b6d3fc11cc { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02637.RNA-Seq.R2_.T C3N-02637 UCEC RNA-Seq tumor CPT0353170001 20210723_P2_G8_WB7988-plate2_S80_R2_001.fastq.gz 4489164405 FASTQ R2_ unaligned CPTAC3 3fe94c4e-cec6-4028-9c39-cd22e2fab33a b79eef640d65ca1f940f7a884633cad3 { 'aliquot_tag': 'ALQ_563948d2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02637.RNA-Seq.transcriptome.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 9e88e48e-ba14-45c3-a380-3441a74ee987.rna_seq.transcriptome.gdc_realn.bam 10318362636 BAM transcriptome harmonized CPTAC3 9de9a65f-6e1c-4aa0-a8b6-5a0b7da2c0d8 d01b572cd647ce7c84eddaea02718ec4 { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02637.RNA-Seq.chimeric.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 30347e70-f3d2-4203-96b5-028fcea0c787.rna_seq.chimeric.gdc_realn.bam 46097815 BAM chimeric harmonized CPTAC3 1d0712bb-beba-4f63-bbd5-16f39fa4c905 decf85e6c228dcf071f2c03e48ba4dd0 { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02637.RNA-Seq.chimeric.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0353170001 fb02a008-4926-4b05-8b40-69c111b5446b.rna_seq.chimeric.gdc_realn.bam 165394152 BAM chimeric harmonized CPTAC3 a6a49b8e-3ed2-4d23-86bc-9bf183adbff8 9e944f91a38933bcea37de4ba889d166 { 'aliquot_tag': 'ALQ_563948d2', 'gdc_sample_type': 'Primary Tumor' } +C3N-02637.RNA-Seq.genomic.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 30347e70-f3d2-4203-96b5-028fcea0c787.rna_seq.genomic.gdc_realn.bam 10855000992 BAM genomic harmonized CPTAC3 801a3406-df8d-4c03-a8ab-fcbb918368e8 a936ae67743c7ce414095a9ec17a9704 { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02637.RNA-Seq.genomic.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0353170001 fb02a008-4926-4b05-8b40-69c111b5446b.rna_seq.genomic.gdc_realn.bam 8357025610 BAM genomic harmonized CPTAC3 06e8f2ec-669e-4cd7-bd0f-1756ddb5f0a0 c6667745ab3f7b9da8800653a62e9953 { 'aliquot_tag': 'ALQ_563948d2', 'gdc_sample_type': 'Primary Tumor' } +C3N-02637.RNA-Seq.R1_L004.T C3N-02637 UCEC RNA-Seq tumor CPT0182210010 190523_UNC32-K00270_0176_BH7CW7BBXY_TGGCCGGT-TAGAGCGC_S14_L004_R1_001.fastq.gz 5134029896 FASTQ R1_L004 unaligned CPTAC3 c180a005-af10-416f-8c52-6a1305d7e7ca acd25610cf9a65a6420f4658ecedbd5a { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02637.RNA-Seq.R2_L004.T C3N-02637 UCEC RNA-Seq tumor CPT0182210010 190523_UNC32-K00270_0176_BH7CW7BBXY_TGGCCGGT-TAGAGCGC_S14_L004_R2_001.fastq.gz 6015527868 FASTQ R2_L004 unaligned CPTAC3 37c97a88-9e12-48e9-be31-e8d260abcf7d 95cea3b5e54e0c828ca259b6d3fc11cc { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02637.RNA-Seq.T C3N-02637 UCEC RNA-Seq tumor CPT0353170001 20210723_P2_G8_WB7988-plate2_S80_R1_001.fastq.gz 4387379633 FASTQ unaligned CPTAC3 8f1cf5e9-e989-4e84-a8e3-30a2cb6e3c41 0a3d7f75dc7b19c82611197b48b72e82 +C3N-02637.RNA-Seq.T C3N-02637 UCEC RNA-Seq tumor CPT0353170001 20210723_P2_G8_WB7988-plate2_S80_R2_001.fastq.gz 4489164405 FASTQ unaligned CPTAC3 3fe94c4e-cec6-4028-9c39-cd22e2fab33a b79eef640d65ca1f940f7a884633cad3 +C3N-02637.RNA-Seq.transcriptome.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0182210010 30347e70-f3d2-4203-96b5-028fcea0c787.rna_seq.transcriptome.gdc_realn.bam 11787607555 BAM transcriptome harmonized CPTAC3 fed1bdca-70d1-4017-a986-304258fc8cd3 9235b032493517308730133d87ca23b6 { 'aliquot_tag': 'ALQ_2275f8e8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02637.RNA-Seq.transcriptome.T.hg38 C3N-02637 UCEC RNA-Seq tumor CPT0353170001 fb02a008-4926-4b05-8b40-69c111b5446b.rna_seq.transcriptome.gdc_realn.bam 3341490790 BAM transcriptome harmonized CPTAC3 c6f4d105-a3ed-493a-ab13-8551cb70efc8 c503f5fd8c6246ee28afb7da4443f1c3 { 'aliquot_tag': 'ALQ_563948d2', 'gdc_sample_type': 'Primary Tumor' } C3N-02637.WGS.N C3N-02637 UCEC WGS blood_normal CPT0182270002 CPT0182270002.WholeGenome.RP-1303.bam 81310098707 BAM aligned CPTAC3 16bcb1bb-d388-4e1e-acab-f80b80669674 27f76de11abda9e4971dfacb9710d6db { 'aliquot_tag': 'ALQ_5a205d25', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02637.WGS.N.hg38 C3N-02637 UCEC WGS blood_normal CPT0182270002 00464f90-2e5a-49b5-992a-4e03065e3c5c_wgs_gdc_realn.bam 118629098101 BAM harmonized CPTAC3 17978b7a-21a9-49df-9047-206d146e8c3f ec179c5511e26e72c85c87f72f18a8e0 { 'aliquot_tag': 'ALQ_5a205d25', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02637.WGS.T C3N-02637 UCEC WGS tumor CPT0182210007 CPT0182210007.WholeGenome.RP-1303.bam 66739179719 BAM aligned CPTAC3 95c7eb99-871b-4c55-83c1-7c8e121176c6 739b8b17278e3481cbf605f572a8987e { 'aliquot_tag': 'ALQ_a50a5c0a', 'gdc_sample_type': 'Primary Tumor' } @@ -32060,13 +34223,16 @@ C3N-02639.MethArray.Green.T C3N-02639 UCEC Methylation Array tumor CPT0182290006 C3N-02639.MethArray.Red.T C3N-02639 UCEC Methylation Array tumor CPT0182290006 203561620043_R05C01_Red.idat 13676211 IDAT Red NA CPTAC3 79ee6811-3bf0-428f-afd1-fc9cba6a4591 add761660f9d3bfd206aab7d5378de11 { 'aliquot_tag': 'ALQ_e27d275d', 'gdc_sample_type': 'Primary Tumor' } C3N-02639.miRNA-Seq.T C3N-02639 UCEC miRNA-Seq tumor CPT0182290009 190508_UNC31-K00269_0215_BH7FYKBBXY_ATTCCT_S27_L004_R1_001.unaln.bam 195039462 BAM unaligned CPTAC3 d3d1cb4b-de58-47b7-a564-a12d4db1bbd2 c5be598fc6316ff04475b44d1ff2c7e6 { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor' } C3N-02639.miRNA-Seq.T.hg38 C3N-02639 UCEC miRNA-Seq tumor CPT0182290009 3ca3760d-5b01-4df7-b6b5-b2bde0ee35f4_mirnaseq_gdc_realn.bam 219852798 BAM harmonized CPTAC3 3205929c-c0cd-4d24-aeba-3b2505113ec5 1ad2dd778f312f2248528b7f905d1f43 { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02639.RNA-Seq.chimeric.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 7d0a31d4-c170-44a3-988f-f81b5f3bd505.rna_seq.chimeric.gdc_realn.bam 35253454 BAM chimeric harmonized CPTAC3 a827d5b8-106a-4708-8c03-c96a886c220f ca86fe989315459990be9c88fcd88d95 { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02639.RNA-Seq.genomic.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 7d0a31d4-c170-44a3-988f-f81b5f3bd505.rna_seq.genomic.gdc_realn.bam 7959721135 BAM genomic harmonized CPTAC3 f2b8ab7e-ba18-4e5f-95f1-c94fcf364426 dc6f3575b607bf0598511f20b4fa50f9 { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02639.RNA-Seq.R1_L004.T C3N-02639 UCEC RNA-Seq tumor CPT0182290009 190523_UNC32-K00270_0176_BH7CW7BBXY_AGTACTCC-AACCTGTT_S13_L004_R1_001.fastq.gz 3786757673 FASTQ R1_L004 unaligned CPTAC3 644687d8-1cf5-49bc-abf8-fa6ee85b5823 fd098a3ef460f456dbb6fdd1f89f9038 { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02639.RNA-Seq.R1_.T C3N-02639 UCEC RNA-Seq tumor CPT0353210001 20210723_P2_F12_WB7988-plate2_S72_R1_001.fastq.gz 4430176120 FASTQ R1_ unaligned CPTAC3 acbed472-88e6-4921-ac6c-476d0c6469b4 b57547a05ce18bf0eb682e830216bc3a { 'aliquot_tag': 'ALQ_5fedcfdc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02639.RNA-Seq.R2_L004.T C3N-02639 UCEC RNA-Seq tumor CPT0182290009 190523_UNC32-K00270_0176_BH7CW7BBXY_AGTACTCC-AACCTGTT_S13_L004_R2_001.fastq.gz 4329848029 FASTQ R2_L004 unaligned CPTAC3 1ee14315-40b1-4f71-9ff8-3d5112b9dcb5 584c805889ec06f8a9e1865746c869a3 { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02639.RNA-Seq.R2_.T C3N-02639 UCEC RNA-Seq tumor CPT0353210001 20210723_P2_F12_WB7988-plate2_S72_R2_001.fastq.gz 4588974531 FASTQ R2_ unaligned CPTAC3 dfaeda31-d434-48df-8665-aedb98453038 21d3d717586bb2004c5a7b69f20a848c { 'aliquot_tag': 'ALQ_5fedcfdc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02639.RNA-Seq.transcriptome.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 7d0a31d4-c170-44a3-988f-f81b5f3bd505.rna_seq.transcriptome.gdc_realn.bam 7498735872 BAM transcriptome harmonized CPTAC3 7e695272-a0f6-49d2-ad3d-58e05f0019a8 284c38c27624e0f0e2707da1f005445f { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02639.RNA-Seq.chimeric.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 a8e6b7e3-99a6-4d57-b0c0-2bd2ad554d1a.rna_seq.chimeric.gdc_realn.bam 35239576 BAM chimeric harmonized CPTAC3 145bddec-788c-4d37-954c-d7d78acec83a c1cc55cc86ab1c7b3e515fe4c134cf7c { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02639.RNA-Seq.chimeric.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0353210001 fb9247e9-b1f6-4529-8df1-fc0067b8abef.rna_seq.chimeric.gdc_realn.bam 179723394 BAM chimeric harmonized CPTAC3 dd139be1-59b3-426e-a7a7-a7b6087c7502 76eeb8459a0bfaa85f10035a555da6a0 { 'aliquot_tag': 'ALQ_5fedcfdc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02639.RNA-Seq.genomic.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 a8e6b7e3-99a6-4d57-b0c0-2bd2ad554d1a.rna_seq.genomic.gdc_realn.bam 7960325947 BAM genomic harmonized CPTAC3 ffed25b7-79ad-4540-9da1-3cdb0462e4ab e9473953008ee4af702233f4b83e0a56 { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02639.RNA-Seq.genomic.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0353210001 fb9247e9-b1f6-4529-8df1-fc0067b8abef.rna_seq.genomic.gdc_realn.bam 8233120817 BAM genomic harmonized CPTAC3 324d8bca-0735-45c9-bb76-a734399f7edb 5f00d285f89e1880b591e2d7b12aefd9 { 'aliquot_tag': 'ALQ_5fedcfdc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02639.RNA-Seq.R1_L004.T C3N-02639 UCEC RNA-Seq tumor CPT0182290009 190523_UNC32-K00270_0176_BH7CW7BBXY_AGTACTCC-AACCTGTT_S13_L004_R1_001.fastq.gz 3786757673 FASTQ R1_L004 unaligned CPTAC3 644687d8-1cf5-49bc-abf8-fa6ee85b5823 fd098a3ef460f456dbb6fdd1f89f9038 { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02639.RNA-Seq.R2_L004.T C3N-02639 UCEC RNA-Seq tumor CPT0182290009 190523_UNC32-K00270_0176_BH7CW7BBXY_AGTACTCC-AACCTGTT_S13_L004_R2_001.fastq.gz 4329848029 FASTQ R2_L004 unaligned CPTAC3 1ee14315-40b1-4f71-9ff8-3d5112b9dcb5 584c805889ec06f8a9e1865746c869a3 { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02639.RNA-Seq.T C3N-02639 UCEC RNA-Seq tumor CPT0353210001 20210723_P2_F12_WB7988-plate2_S72_R1_001.fastq.gz 4430176120 FASTQ unaligned CPTAC3 acbed472-88e6-4921-ac6c-476d0c6469b4 b57547a05ce18bf0eb682e830216bc3a +C3N-02639.RNA-Seq.T C3N-02639 UCEC RNA-Seq tumor CPT0353210001 20210723_P2_F12_WB7988-plate2_S72_R2_001.fastq.gz 4588974531 FASTQ unaligned CPTAC3 dfaeda31-d434-48df-8665-aedb98453038 21d3d717586bb2004c5a7b69f20a848c +C3N-02639.RNA-Seq.transcriptome.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0182290009 a8e6b7e3-99a6-4d57-b0c0-2bd2ad554d1a.rna_seq.transcriptome.gdc_realn.bam 8661165640 BAM transcriptome harmonized CPTAC3 8e52b3ba-bf37-4830-bf89-3d876ca7b3db 93c3ce9203007b11543ff6d6d8ed76ac { 'aliquot_tag': 'ALQ_72c23acc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02639.RNA-Seq.transcriptome.T.hg38 C3N-02639 UCEC RNA-Seq tumor CPT0353210001 fb9247e9-b1f6-4529-8df1-fc0067b8abef.rna_seq.transcriptome.gdc_realn.bam 3402349083 BAM transcriptome harmonized CPTAC3 c7e6036e-017a-4442-83df-ac2791769bf2 6c9d996a8cb4805e7177779bc705b1ad { 'aliquot_tag': 'ALQ_5fedcfdc', 'gdc_sample_type': 'Primary Tumor' } C3N-02639.WGS.N C3N-02639 UCEC WGS blood_normal CPT0182320002 CPT0182320002.WholeGenome.RP-1303.bam 71676985544 BAM aligned CPTAC3 24bffbe1-d9c2-43b0-9c73-66d33befbb12 1ff3feae8dd58681f81a4ef7ebdd75d2 { 'aliquot_tag': 'ALQ_599c01f0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02639.WGS.N.hg38 C3N-02639 UCEC WGS blood_normal CPT0182320002 00d8b761-e94f-4271-b616-edc69f702391_wgs_gdc_realn.bam 106034460566 BAM harmonized CPTAC3 1aa94f20-ba8b-4173-a91a-2f820a1f14c9 a88ef69f6a947f7bcea0a86e9736fc07 { 'aliquot_tag': 'ALQ_599c01f0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02639.WGS.T C3N-02639 UCEC WGS tumor CPT0182290006 CPT0182290006.WholeGenome.RP-1303.bam 65516795986 BAM aligned CPTAC3 f7759dcb-32fc-4d91-8e1e-91f7768d2d29 6885f0980bee31a39f2f676626b41a54 { 'aliquot_tag': 'ALQ_e27d275d', 'gdc_sample_type': 'Primary Tumor' } @@ -32083,16 +34249,16 @@ C3N-02672.miRNA-Seq.A C3N-02672 LUAD miRNA-Seq tissue_normal CPT0187150009 19013 C3N-02672.miRNA-Seq.A.hg38 C3N-02672 LUAD miRNA-Seq tissue_normal CPT0187150009 0987a3a5-b193-4e1f-b114-0ac572128f53_mirnaseq_gdc_realn.bam 234470562 BAM harmonized CPTAC3 5a98f12e-fce7-418c-9611-011661a9b927 1e5d4165837f88953787373c76267582 { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02672.miRNA-Seq.T C3N-02672 LUAD miRNA-Seq tumor CPT0187140009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGATGT_S3_L008_R1_001.unaln.bam 275488120 BAM unaligned CPTAC3 5f9d5212-4805-43ae-b273-fe1766746f85 2f97038cdf4c17e6357e44e646370eb1 { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor' } C3N-02672.miRNA-Seq.T.hg38 C3N-02672 LUAD miRNA-Seq tumor CPT0187140009 af74793e-9308-4ca9-83b6-631db6d48ce7_mirnaseq_gdc_realn.bam 298096993 BAM harmonized CPTAC3 541460b4-d9ba-427f-a102-020d2c907036 d1760b7ddd59e4017f7808c146b45806 { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor' } -C3N-02672.RNA-Seq.chimeric.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 5b2b9178-0984-4115-a8a5-dde22ffd96be.rna_seq.chimeric.gdc_realn.bam 48766267 BAM chimeric harmonized CPTAC3 da26b0b4-cbfe-4866-a1ec-def703733a57 a6848e977825b8c05661d4d8f02bf5d7 { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02672.RNA-Seq.chimeric.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 059cd684-44d0-4e53-b2cf-b90ac28b346b.rna_seq.chimeric.gdc_realn.bam 395111690 BAM chimeric harmonized CPTAC3 38661dee-0cf2-4c09-a5ba-350cf6b51f0d f958ad35e866be22f3c30932801cfbfc { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor' } -C3N-02672.RNA-Seq.genomic.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 5b2b9178-0984-4115-a8a5-dde22ffd96be.rna_seq.genomic.gdc_realn.bam 8883953931 BAM genomic harmonized CPTAC3 0e254c43-b43c-4a6f-9f3e-993334a36974 1233de18156ad588b8469f777a79a733 { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02672.RNA-Seq.genomic.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 059cd684-44d0-4e53-b2cf-b90ac28b346b.rna_seq.genomic.gdc_realn.bam 10588447495 BAM genomic harmonized CPTAC3 9392491f-40e2-4b67-afa1-0227605aa0e0 e0280f09599ff6b478d2ece99fb9c051 { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor' } -C3N-02672.RNA-Seq.R1_L006.A C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 190201_UNC31-K00269_0190_BH3LFKBBXY_GATCAG_S22_L006_R1_001.fastq.gz 3892141783 FASTQ R1_L006 unaligned CPTAC3 5618e0a9-eb80-4702-b4f8-4ed3320d8fed 86aa6b12c8296c05240e6578ef8af468 { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02672.RNA-Seq.R1_L007.T C3N-02672 LUAD RNA-Seq tumor CPT0187140009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGATGT_S24_L007_R1_001.fastq.gz 4722651371 FASTQ R1_L007 unaligned CPTAC3 c09ebf88-ef8a-4352-9643-b3589b2d1a5b f811ba0b3e024d8738a901e5d16e4b17 { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor' } -C3N-02672.RNA-Seq.R2_L006.A C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 190201_UNC31-K00269_0190_BH3LFKBBXY_GATCAG_S22_L006_R2_001.fastq.gz 4438018181 FASTQ R2_L006 unaligned CPTAC3 1a8a3b4c-1913-4b5e-a1a0-ecb873b83953 b860489e537c0bbb1818a5eca1294744 { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02672.RNA-Seq.R2_L007.T C3N-02672 LUAD RNA-Seq tumor CPT0187140009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGATGT_S24_L007_R2_001.fastq.gz 5103386418 FASTQ R2_L007 unaligned CPTAC3 ed694d4c-bbf6-4c3e-a250-ae6318f879c3 85f806661f08f8b8d06d6d8b03ebbaa6 { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor' } -C3N-02672.RNA-Seq.transcriptome.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 5b2b9178-0984-4115-a8a5-dde22ffd96be.rna_seq.transcriptome.gdc_realn.bam 8854562053 BAM transcriptome harmonized CPTAC3 e912af77-2dd4-4892-bdc7-8949a9ecd862 30eaa03ad62cf760c3983a6e6c9e8c2d { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02672.RNA-Seq.transcriptome.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 059cd684-44d0-4e53-b2cf-b90ac28b346b.rna_seq.transcriptome.gdc_realn.bam 11262978215 BAM transcriptome harmonized CPTAC3 f49c9f31-5697-4f51-8bc7-ef6fcbcd140e 1d8e9121884af199e3b5370c9effdc7d { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor' } +C3N-02672.RNA-Seq.chimeric.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 d09e76b4-f980-4b9c-a9e1-e97b60e26950.rna_seq.chimeric.gdc_realn.bam 48765280 BAM chimeric harmonized CPTAC3 dffb0c9a-9980-4671-aae9-9fd43a06b55b 09257a9a2184ee9e5cf3d24155e0c0f6 { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02672.RNA-Seq.chimeric.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 514aa2ae-6c49-4b89-9a44-0f87a80bf77f.rna_seq.chimeric.gdc_realn.bam 395137570 BAM chimeric harmonized CPTAC3 a0109033-6edd-4ce8-b3ef-b4e19ebd7b1e 12adab292d223327b8d609c32834a112 { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor' } +C3N-02672.RNA-Seq.genomic.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 d09e76b4-f980-4b9c-a9e1-e97b60e26950.rna_seq.genomic.gdc_realn.bam 8885532899 BAM genomic harmonized CPTAC3 ddd7a635-7772-4ad2-b265-a7269245249a 1e3c9f9463002ac450412c8f407b5263 { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02672.RNA-Seq.genomic.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 514aa2ae-6c49-4b89-9a44-0f87a80bf77f.rna_seq.genomic.gdc_realn.bam 10591219008 BAM genomic harmonized CPTAC3 d182f9b4-6da0-4fb9-a711-dcc15b56b9a0 dcc02d7f60628bd6cfb19631c86cd886 { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor' } +C3N-02672.RNA-Seq.R1_L006.A C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 190201_UNC31-K00269_0190_BH3LFKBBXY_GATCAG_S22_L006_R1_001.fastq.gz 3892141783 FASTQ R1_L006 unaligned CPTAC3 5618e0a9-eb80-4702-b4f8-4ed3320d8fed 86aa6b12c8296c05240e6578ef8af468 { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02672.RNA-Seq.R1_L007.T C3N-02672 LUAD RNA-Seq tumor CPT0187140009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGATGT_S24_L007_R1_001.fastq.gz 4722651371 FASTQ R1_L007 unaligned CPTAC3 c09ebf88-ef8a-4352-9643-b3589b2d1a5b f811ba0b3e024d8738a901e5d16e4b17 { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02672.RNA-Seq.R2_L006.A C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 190201_UNC31-K00269_0190_BH3LFKBBXY_GATCAG_S22_L006_R2_001.fastq.gz 4438018181 FASTQ R2_L006 unaligned CPTAC3 1a8a3b4c-1913-4b5e-a1a0-ecb873b83953 b860489e537c0bbb1818a5eca1294744 { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02672.RNA-Seq.R2_L007.T C3N-02672 LUAD RNA-Seq tumor CPT0187140009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGATGT_S24_L007_R2_001.fastq.gz 5103386418 FASTQ R2_L007 unaligned CPTAC3 ed694d4c-bbf6-4c3e-a250-ae6318f879c3 85f806661f08f8b8d06d6d8b03ebbaa6 { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02672.RNA-Seq.transcriptome.A.hg38 C3N-02672 LUAD RNA-Seq tissue_normal CPT0187150009 d09e76b4-f980-4b9c-a9e1-e97b60e26950.rna_seq.transcriptome.gdc_realn.bam 9964371206 BAM transcriptome harmonized CPTAC3 9bd59659-d680-44e4-82d4-a202b00dcd15 edc9fc767cc36f0ede844136146852b0 { 'aliquot_tag': 'ALQ_639e8ac4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02672.RNA-Seq.transcriptome.T.hg38 C3N-02672 LUAD RNA-Seq tumor CPT0187140009 514aa2ae-6c49-4b89-9a44-0f87a80bf77f.rna_seq.transcriptome.gdc_realn.bam 12660332467 BAM transcriptome harmonized CPTAC3 c2cca0f3-79be-45c0-839d-8d33e4f41528 b36d66e1fd081cad6165a0a863e31f34 { 'aliquot_tag': 'ALQ_5efea374', 'gdc_sample_type': 'Primary Tumor' } C3N-02672.WGS.N C3N-02672 LUAD WGS blood_normal CPT0187310002 CPT0187310002.WholeGenome.RP-1303.bam 109521748483 BAM aligned CPTAC3 bba8c354-02df-4510-b025-c159c8370d2b 6c83446c9cc4261de940e2485408b311 { 'aliquot_tag': 'ALQ_4c045487', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02672.WGS.N.hg38 C3N-02672 LUAD WGS blood_normal CPT0187310002 d6f68369-a57e-4335-bea5-961283563bb4_wgs_gdc_realn.bam 157758081251 BAM harmonized CPTAC3 b420a52b-7f73-41ea-832d-33e76186d2d9 0a46e30f70ba94b3c739a1a9bf190084 { 'aliquot_tag': 'ALQ_4c045487', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02672.WGS.T C3N-02672 LUAD WGS tumor CPT0187140006 CPT0187140006.WholeGenome.RP-1303.bam 95190113646 BAM aligned CPTAC3 ff8348ce-ca28-40cd-be47-f4e4e6752c1a 49811c177f185b9c340a98c678847b07 { 'aliquot_tag': 'ALQ_ce41bee5', 'gdc_sample_type': 'Primary Tumor' } @@ -32112,11 +34278,11 @@ C3N-02675.miRNA-Seq.T.hg38 C3N-02675 LSCC miRNA-Seq tumor CPT0187370009 5076f611 C3N-02675.RNA-Seq.chimeric.A.hg38 C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 efb76d4e-1112-4bd5-aa7a-8c3fa150d127.rna_seq.chimeric.gdc_realn.bam 186708894 BAM chimeric harmonized CPTAC3 e86e4191-9226-4cbe-b02b-3367c9aeb4af 8042983713d5acc699668ef7e75145ab { 'aliquot_tag': 'ALQ_4679f2ef', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02675.RNA-Seq.chimeric.T.hg38 C3N-02675 LSCC RNA-Seq tumor CPT0187370009 d5d1e392-b569-4545-aaa0-2ff0a3d196f2.rna_seq.chimeric.gdc_realn.bam 218309995 BAM chimeric harmonized CPTAC3 4558b346-073b-4970-b508-3d9393e42073 aab5ea7f5739419404b730f3f15dde03 { 'aliquot_tag': 'ALQ_549678af', 'gdc_sample_type': 'Primary Tumor' } C3N-02675.RNA-Seq.genomic.A.hg38 C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 efb76d4e-1112-4bd5-aa7a-8c3fa150d127.rna_seq.genomic.gdc_realn.bam 6608246091 BAM genomic harmonized CPTAC3 2cddb8bf-97f2-4842-8833-cf524a875572 ab8ab4d378319c0dd51dcd0ef4c1e0bc { 'aliquot_tag': 'ALQ_4679f2ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02675.RNA-Seq.genomic.T.hg38 C3N-02675 LSCC RNA-Seq tumor CPT0187370009 d5d1e392-b569-4545-aaa0-2ff0a3d196f2.rna_seq.genomic.gdc_realn.bam 8426223460 BAM genomic harmonized CPTAC3 c5dbf543-5c1c-4b6f-8d63-10028541a590 0da3d4e118fe755dbe24d223db6155ef { 'aliquot_tag': 'ALQ_549678af', 'gdc_sample_type': 'Primary Tumor' } -C3N-02675.RNA-Seq.R1_L003.T C3N-02675 LSCC RNA-Seq tumor CPT0187370009 181002_UNC31-K00269_0156_AHWN3HBBXX_CTTGTA_S10_L003_R1_001.fastq.gz 3957255137 FASTQ R1_L003 unaligned CPTAC3 2a2faead-8ea1-410b-ad2d-ed3164511bbd 5b62708367f294edd2102ac4a45e69e2 { 'aliquot_tag': 'ALQ_549678af', 'gdc_sample_type': 'Primary Tumor' } -C3N-02675.RNA-Seq.R1_L007.A C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L007_R1_001.fastq.gz 2926622604 FASTQ R1_L007 unaligned CPTAC3 b20bef80-016d-49f1-8eea-e5e09bf6d499 93c629f94a04dbc66631e726efe3011c { 'aliquot_tag': 'ALQ_4679f2ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02675.RNA-Seq.R2_L003.T C3N-02675 LSCC RNA-Seq tumor CPT0187370009 181002_UNC31-K00269_0156_AHWN3HBBXX_CTTGTA_S10_L003_R2_001.fastq.gz 4263034307 FASTQ R2_L003 unaligned CPTAC3 3d304ca4-c27b-4541-aabc-37e79b91b03e b9bcab6f669ab92b699dc35cc08d2976 { 'aliquot_tag': 'ALQ_549678af', 'gdc_sample_type': 'Primary Tumor' } -C3N-02675.RNA-Seq.R2_L007.A C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L007_R2_001.fastq.gz 3082829787 FASTQ R2_L007 unaligned CPTAC3 9e8fed1d-63b1-434e-b294-03684885c147 463d5faea493a7c47fee06cf85332779 { 'aliquot_tag': 'ALQ_4679f2ef', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02675.RNA-Seq.genomic.T.hg38 C3N-02675 LSCC RNA-Seq tumor CPT0187370009 d5d1e392-b569-4545-aaa0-2ff0a3d196f2.rna_seq.genomic.gdc_realn.bam 8426223460 BAM genomic harmonized CPTAC3 0f85343c-74dd-4f74-84dc-604e6333c67d 0da3d4e118fe755dbe24d223db6155ef { 'aliquot_tag': 'ALQ_549678af', 'gdc_sample_type': 'Primary Tumor' } +C3N-02675.RNA-Seq.R1_L003.T C3N-02675 LSCC RNA-Seq tumor CPT0187370009 181002_UNC31-K00269_0156_AHWN3HBBXX_CTTGTA_S10_L003_R1_001.fastq.gz 3957255137 FASTQ R1_L003 unaligned CPTAC3 2a2faead-8ea1-410b-ad2d-ed3164511bbd 5b62708367f294edd2102ac4a45e69e2 { 'aliquot_tag': 'ALQ_549678af', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02675.RNA-Seq.R1_L007.A C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L007_R1_001.fastq.gz 2926622604 FASTQ R1_L007 unaligned CPTAC3 b20bef80-016d-49f1-8eea-e5e09bf6d499 93c629f94a04dbc66631e726efe3011c { 'aliquot_tag': 'ALQ_4679f2ef', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02675.RNA-Seq.R2_L003.T C3N-02675 LSCC RNA-Seq tumor CPT0187370009 181002_UNC31-K00269_0156_AHWN3HBBXX_CTTGTA_S10_L003_R2_001.fastq.gz 4263034307 FASTQ R2_L003 unaligned CPTAC3 3d304ca4-c27b-4541-aabc-37e79b91b03e b9bcab6f669ab92b699dc35cc08d2976 { 'aliquot_tag': 'ALQ_549678af', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02675.RNA-Seq.R2_L007.A C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 190108_UNC31-K00269_0177_BH32KTBBXY_GTTTCG_S24_L007_R2_001.fastq.gz 3082829787 FASTQ R2_L007 unaligned CPTAC3 9e8fed1d-63b1-434e-b294-03684885c147 463d5faea493a7c47fee06cf85332779 { 'aliquot_tag': 'ALQ_4679f2ef', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-02675.RNA-Seq.transcriptome.A.hg38 C3N-02675 LSCC RNA-Seq tissue_normal CPT0187380006 efb76d4e-1112-4bd5-aa7a-8c3fa150d127.rna_seq.transcriptome.gdc_realn.bam 8060060193 BAM transcriptome harmonized CPTAC3 bf0192fc-e4b6-4aaf-927f-d7aafe584648 8435b44a5c33483e27a773ed70d28e02 { 'aliquot_tag': 'ALQ_4679f2ef', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02675.RNA-Seq.transcriptome.T.hg38 C3N-02675 LSCC RNA-Seq tumor CPT0187370009 d5d1e392-b569-4545-aaa0-2ff0a3d196f2.rna_seq.transcriptome.gdc_realn.bam 9517931343 BAM transcriptome harmonized CPTAC3 e736904c-d12d-41ec-a1ac-5b557379e82b bec24851295639127c1ca2786430afec { 'aliquot_tag': 'ALQ_549678af', 'gdc_sample_type': 'Primary Tumor' } C3N-02675.WGS.A C3N-02675 LSCC WGS tissue_normal CPT0187380009 CPT0187380009.WholeGenome.RP-1303.bam 57386274745 BAM aligned CPTAC3 921b9a10-c339-4857-9f82-f63862504e41 2d5e701e0f86396c04fe3c00cad16a98 { 'aliquot_tag': 'ALQ_d6c6ef7e', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -32135,13 +34301,16 @@ C3N-02678.MethArray.Green.T C3N-02678 UCEC Methylation Array tumor CPT0182340007 C3N-02678.MethArray.Red.T C3N-02678 UCEC Methylation Array tumor CPT0182340007 203561620072_R05C01_Red.idat 13676226 IDAT Red NA CPTAC3 e7017913-ae91-4d3b-9de2-9b2ed83e9b03 94d0ed7ee1104a787ded20df2689e73b { 'aliquot_tag': 'ALQ_a6b600df', 'gdc_sample_type': 'Primary Tumor' } C3N-02678.miRNA-Seq.T C3N-02678 UCEC miRNA-Seq tumor CPT0182340010 190508_UNC31-K00269_0215_BH7FYKBBXY_AGTTCC_S14_L001_R1_001.unaln.bam 301924540 BAM unaligned CPTAC3 cf1b1095-6b47-43e7-a659-7d2f09ae03f8 db27d1a9d55d92796de8312870f32fa6 { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor' } C3N-02678.miRNA-Seq.T.hg38 C3N-02678 UCEC miRNA-Seq tumor CPT0182340010 e913f0a9-d054-42b1-99ee-001cfdf1e317_mirnaseq_gdc_realn.bam 345208365 BAM harmonized CPTAC3 8c53ab57-068f-4f58-b3be-d60e532889d6 93ce5d07d8cd1e925c90ac2cb4858f1a { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02678.RNA-Seq.chimeric.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 de409bfb-74e1-4782-81c1-1c5ab901e9d4.rna_seq.chimeric.gdc_realn.bam 32223798 BAM chimeric harmonized CPTAC3 e6190c1c-101b-40c1-a39d-5d0505b48a26 357c6d785cb0f6ffb2df006015fa7ea4 { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02678.RNA-Seq.genomic.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 de409bfb-74e1-4782-81c1-1c5ab901e9d4.rna_seq.genomic.gdc_realn.bam 8104846402 BAM genomic harmonized CPTAC3 07201dec-7d93-432f-9d03-a5a836b910f3 48468d5bed7c1de73ee3d7b57484b09d { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02678.RNA-Seq.R1_L005.T C3N-02678 UCEC RNA-Seq tumor CPT0182340010 190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R1_001.fastq.gz 3785854007 FASTQ R1_L005 unaligned CPTAC3 c83686a4-c3bf-4237-ad36-cc4e3a437299 58d643202a969b2e5af01c3b138e8a21 { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02678.RNA-Seq.R1_.T C3N-02678 UCEC RNA-Seq tumor CPT0353280001 20210729_P3_G3_WB7988-Plate3_S75_R1_001.fastq.gz 6626776231 FASTQ R1_ unaligned CPTAC3 421abc67-59ec-46b7-b13a-9bd718ba7208 d7ae8e1757c7fb230e3e401cf10f79fa { 'aliquot_tag': 'ALQ_52fdadad', 'gdc_sample_type': 'Primary Tumor' } -C3N-02678.RNA-Seq.R2_L005.T C3N-02678 UCEC RNA-Seq tumor CPT0182340010 190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R2_001.fastq.gz 4391740200 FASTQ R2_L005 unaligned CPTAC3 12b57388-d7fd-4fa5-962f-4c95af38f9a8 199bff4437aea3967494e5b9ff0cd7ac { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02678.RNA-Seq.R2_.T C3N-02678 UCEC RNA-Seq tumor CPT0353280001 20210729_P3_G3_WB7988-Plate3_S75_R2_001.fastq.gz 6912505116 FASTQ R2_ unaligned CPTAC3 729d183b-67fc-4822-b28f-cdc7728992cd 5cddbe63cadf9f95c2e4d5dabf7f8341 { 'aliquot_tag': 'ALQ_52fdadad', 'gdc_sample_type': 'Primary Tumor' } -C3N-02678.RNA-Seq.transcriptome.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 de409bfb-74e1-4782-81c1-1c5ab901e9d4.rna_seq.transcriptome.gdc_realn.bam 9169605031 BAM transcriptome harmonized CPTAC3 6d9a42ac-1eff-4201-ac7f-c44b0a26ccf0 ed5ad00dbf09cb39e8d6171ca0a27b0a { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02678.RNA-Seq.chimeric.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 735ebf63-cd3f-4245-a4a5-88bcb7b270c6.rna_seq.chimeric.gdc_realn.bam 32215785 BAM chimeric harmonized CPTAC3 93ea17f4-5109-4dc8-806b-cac6dcbe9c66 2b988d94c8186f9d7d4c3471e53c8e31 { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02678.RNA-Seq.chimeric.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0353280001 0aa39df5-d193-4d24-99f8-6ffb41a03099.rna_seq.chimeric.gdc_realn.bam 190228109 BAM chimeric harmonized CPTAC3 d5b75ac4-de33-45c0-8943-f78ac5844c28 adb291af0820587a4dce602aac971645 { 'aliquot_tag': 'ALQ_52fdadad', 'gdc_sample_type': 'Primary Tumor' } +C3N-02678.RNA-Seq.genomic.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 735ebf63-cd3f-4245-a4a5-88bcb7b270c6.rna_seq.genomic.gdc_realn.bam 8105950781 BAM genomic harmonized CPTAC3 0795b2dd-4ad8-4640-9eac-adfe603abbc0 337d5b7ed5b7782d00d1a76204076030 { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02678.RNA-Seq.genomic.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0353280001 0aa39df5-d193-4d24-99f8-6ffb41a03099.rna_seq.genomic.gdc_realn.bam 8625792035 BAM genomic harmonized CPTAC3 9fb93b50-880b-4378-8f22-1ca65736258b baa0735da7eb45895ea1bfd100d0fc71 { 'aliquot_tag': 'ALQ_52fdadad', 'gdc_sample_type': 'Primary Tumor' } +C3N-02678.RNA-Seq.R1_L005.T C3N-02678 UCEC RNA-Seq tumor CPT0182340010 190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R1_001.fastq.gz 3785854007 FASTQ R1_L005 unaligned CPTAC3 c83686a4-c3bf-4237-ad36-cc4e3a437299 58d643202a969b2e5af01c3b138e8a21 { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02678.RNA-Seq.R2_L005.T C3N-02678 UCEC RNA-Seq tumor CPT0182340010 190522_UNC31-K00269_0217_AH7F5MBBXY_TTGGACTC-GGAAGCAG_S31_L005_R2_001.fastq.gz 4391740200 FASTQ R2_L005 unaligned CPTAC3 12b57388-d7fd-4fa5-962f-4c95af38f9a8 199bff4437aea3967494e5b9ff0cd7ac { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02678.RNA-Seq.T C3N-02678 UCEC RNA-Seq tumor CPT0353280001 20210729_P3_G3_WB7988-Plate3_S75_R1_001.fastq.gz 6626776231 FASTQ unaligned CPTAC3 421abc67-59ec-46b7-b13a-9bd718ba7208 d7ae8e1757c7fb230e3e401cf10f79fa +C3N-02678.RNA-Seq.T C3N-02678 UCEC RNA-Seq tumor CPT0353280001 20210729_P3_G3_WB7988-Plate3_S75_R2_001.fastq.gz 6912505116 FASTQ unaligned CPTAC3 729d183b-67fc-4822-b28f-cdc7728992cd 5cddbe63cadf9f95c2e4d5dabf7f8341 +C3N-02678.RNA-Seq.transcriptome.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0182340010 735ebf63-cd3f-4245-a4a5-88bcb7b270c6.rna_seq.transcriptome.gdc_realn.bam 10555973338 BAM transcriptome harmonized CPTAC3 4f0581ce-ce00-40d6-85ec-b2dfc5b5417e 927a102f3cb183cad94486d83ece7ed9 { 'aliquot_tag': 'ALQ_21c9a43d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02678.RNA-Seq.transcriptome.T.hg38 C3N-02678 UCEC RNA-Seq tumor CPT0353280001 0aa39df5-d193-4d24-99f8-6ffb41a03099.rna_seq.transcriptome.gdc_realn.bam 4361804382 BAM transcriptome harmonized CPTAC3 f6f0ce6c-c2a4-437f-9346-fb887b199bc0 1a0663f41b4bda7704fa9daa89cd2952 { 'aliquot_tag': 'ALQ_52fdadad', 'gdc_sample_type': 'Primary Tumor' } C3N-02678.WGS.N C3N-02678 UCEC WGS blood_normal CPT0182370002 CPT0182370002.WholeGenome.RP-1303.bam 75363014340 BAM aligned CPTAC3 d047befe-df1d-434d-9f04-79ae1f3cf426 2118b043e6a46bdc04c5464f1afdf63c { 'aliquot_tag': 'ALQ_917c8e80', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02678.WGS.N.hg38 C3N-02678 UCEC WGS blood_normal CPT0182370002 e63fe275-2c51-449e-805b-1a2447ccb101_wgs_gdc_realn.bam 109977924868 BAM harmonized CPTAC3 c5e83454-c52b-4426-a985-fe9ffdaa710f 87dff55056753581653694ab2e5d52ec { 'aliquot_tag': 'ALQ_917c8e80', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02678.WGS.T C3N-02678 UCEC WGS tumor CPT0182340007 CPT0182340007.WholeGenome.RP-1303.bam 80763839420 BAM aligned CPTAC3 b1f00382-d6bf-4586-baf5-b931bb7a6800 4212f8fde142cf4be7b4a8ea6a16dc45 { 'aliquot_tag': 'ALQ_a6b600df', 'gdc_sample_type': 'Primary Tumor' } @@ -32154,11 +34323,11 @@ C3N-02681.MethArray.Green.T C3N-02681 GBM Methylation Array tumor CPT0224870006 C3N-02681.MethArray.Red.T C3N-02681 GBM Methylation Array tumor CPT0224870006 204367400148_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 f6fb6624-00e6-41ab-b0b6-25d73f02a117 a5d02b9739760b18c4bb9e37cf78e324 { 'aliquot_tag': 'ALQ_374baf6d', 'gdc_sample_type': 'Primary Tumor' } C3N-02681.miRNA-Seq.T C3N-02681 GBM miRNA-Seq tumor CPT0224870009 200526_UNC32-K00270_0248_BHH7WFBBXY_TCGGCA_S20_L001_R1_001.unaln.bam 404126709 BAM unaligned CPTAC3 d3101058-1ae1-4bd5-937c-aa8cb895c8c0 e30def0150579c5234737ce1c34c3c78 { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor' } C3N-02681.miRNA-Seq.T.hg38 C3N-02681 GBM miRNA-Seq tumor CPT0224870009 a1b4b1da-1b16-44a1-89f4-64ea9218c326_mirnaseq_gdc_realn.bam 440358841 BAM harmonized CPTAC3 b32908c3-4bcf-47cb-9b68-002c51ea2866 63e07ca0e1b1a7544a004b8a61a3d277 { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02681.RNA-Seq.chimeric.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 362b386a-b8e1-4b89-b709-cafc2ab29665.rna_seq.chimeric.gdc_realn.bam 33178531 BAM chimeric harmonized CPTAC3 5462dd93-4f27-43b3-886b-e1f60298d5e8 2bc8bcf4d63606fe37ea8329ad1dd83a { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02681.RNA-Seq.genomic.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 362b386a-b8e1-4b89-b709-cafc2ab29665.rna_seq.genomic.gdc_realn.bam 7420626393 BAM genomic harmonized CPTAC3 963319c6-c658-47cf-bfb8-86e4303901ac 6770413aa94a529c7f2982d2a6e45b95 { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02681.RNA-Seq.R1_L003.T C3N-02681 GBM RNA-Seq tumor CPT0224870009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R1_001.fastq.gz 3315991757 FASTQ R1_L003 unaligned CPTAC3 a9a4c580-e93e-4331-bcd2-26bd9f24d024 2ae78b19896ae2a06ee16e04f7e27cfc { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02681.RNA-Seq.R2_L003.T C3N-02681 GBM RNA-Seq tumor CPT0224870009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R2_001.fastq.gz 3893705915 FASTQ R2_L003 unaligned CPTAC3 17f81101-60cd-4f3f-905c-776206e75ed1 a5fd48e9b39ba8a15d982a7792fd8a7f { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor' } -C3N-02681.RNA-Seq.transcriptome.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 362b386a-b8e1-4b89-b709-cafc2ab29665.rna_seq.transcriptome.gdc_realn.bam 6763997414 BAM transcriptome harmonized CPTAC3 bcff99ee-724e-4193-943a-9ea4202490c7 e021fcfee3b4fa588ea2010d0f9bac8f { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02681.RNA-Seq.chimeric.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 895d662e-2515-42e0-855b-f7c23f9d7a53.rna_seq.chimeric.gdc_realn.bam 33161553 BAM chimeric harmonized CPTAC3 206459a2-b872-4d59-922b-1b76e68fb060 2c49e3c1a202796bfad9882fb6ae4608 { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02681.RNA-Seq.genomic.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 895d662e-2515-42e0-855b-f7c23f9d7a53.rna_seq.genomic.gdc_realn.bam 7421482980 BAM genomic harmonized CPTAC3 3fcbdde0-f21d-46fc-aff7-368f2847e3ab 79ce3733b174ea46cee84da925c45306 { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor' } +C3N-02681.RNA-Seq.R1_L003.T C3N-02681 GBM RNA-Seq tumor CPT0224870009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R1_001.fastq.gz 3315991757 FASTQ R1_L003 unaligned CPTAC3 a9a4c580-e93e-4331-bcd2-26bd9f24d024 2ae78b19896ae2a06ee16e04f7e27cfc { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02681.RNA-Seq.R2_L003.T C3N-02681 GBM RNA-Seq tumor CPT0224870009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R2_001.fastq.gz 3893705915 FASTQ R2_L003 unaligned CPTAC3 17f81101-60cd-4f3f-905c-776206e75ed1 a5fd48e9b39ba8a15d982a7792fd8a7f { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02681.RNA-Seq.transcriptome.T.hg38 C3N-02681 GBM RNA-Seq tumor CPT0224870009 895d662e-2515-42e0-855b-f7c23f9d7a53.rna_seq.transcriptome.gdc_realn.bam 7721749236 BAM transcriptome harmonized CPTAC3 6a70da7e-c9c4-4d04-af70-3d09addfb6c5 782e612ed934232cbc3a0e7a0aba1f6f { 'aliquot_tag': 'ALQ_a7f4b2fc', 'gdc_sample_type': 'Primary Tumor' } C3N-02681.WGS.N C3N-02681 GBM WGS blood_normal CPT0224890002 CPT0224890002.WholeGenome.RP-2158.bam 29513597556 BAM aligned CPTAC3 84be52db-65d0-4a40-9707-a7a31938a2b4 93f2092af659e9b5eb036575744cb5c2 { 'aliquot_tag': 'ALQ_8f16d515', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02681.WGS.N.hg38 C3N-02681 GBM WGS blood_normal CPT0224890002 64828d5e-4e40-4ea2-a5ac-8e3c4fd5b345_wgs_gdc_realn.bam 87927682035 BAM harmonized CPTAC3 fc1f6717-d9aa-4711-a859-63dfbebbb225 3d99d1e398ddca1e01cdff813d131f15 { 'aliquot_tag': 'ALQ_8f16d515', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02681.WGS.T C3N-02681 GBM WGS tumor CPT0224870006 CPT0224870006.WholeGenome.RP-2158.bam 21588349176 BAM aligned CPTAC3 d6e95ce9-5c17-42a4-ad5f-7fd62229b2f8 ab991cc28e94d545e479809fe357300d { 'aliquot_tag': 'ALQ_374baf6d', 'gdc_sample_type': 'Primary Tumor' } @@ -32171,11 +34340,11 @@ C3N-02682.MethArray.Green.T C3N-02682 GBM Methylation Array tumor CPT0224900006 C3N-02682.MethArray.Red.T C3N-02682 GBM Methylation Array tumor CPT0224900006 204930630082_R05C01_Red.idat 13677900 IDAT Red NA CPTAC3 ec061ee7-dae9-48d1-b7e8-9540a2592361 a7a62061fba9fdaf752d501897a2947c { 'aliquot_tag': 'ALQ_4e37a0d8', 'gdc_sample_type': 'Primary Tumor' } C3N-02682.miRNA-Seq.T C3N-02682 GBM miRNA-Seq tumor CPT0224900009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTGAAA_S43_L002_R1_001.unaln.bam 222592560 BAM unaligned CPTAC3 9d01dc24-eb15-4c28-bba9-f04775a98168 c8c95be2aeaa145208f2c8fcabbac0e6 { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor' } C3N-02682.miRNA-Seq.T.hg38 C3N-02682 GBM miRNA-Seq tumor CPT0224900009 034ae2ee-d3f8-4256-83c1-089148361759_mirnaseq_gdc_realn.bam 252734628 BAM harmonized CPTAC3 0023dbf5-2b24-4578-9392-180ffe74a898 ed455efe281b1dc88e85725f4bae72e3 { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor' } -C3N-02682.RNA-Seq.chimeric.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 046a7173-367b-48aa-9d9d-983587b46505.rna_seq.chimeric.gdc_realn.bam 37970118 BAM chimeric harmonized CPTAC3 495edcf0-dab4-4d58-992d-0d7ece9ef927 a902fdc0a66712e9d992225689a91b8d { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor' } -C3N-02682.RNA-Seq.genomic.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 046a7173-367b-48aa-9d9d-983587b46505.rna_seq.genomic.gdc_realn.bam 8910794360 BAM genomic harmonized CPTAC3 cc0e65fe-1d19-4938-a144-8ef7ebf8b212 55a2d47e59e74acbec1fb23698bc692b { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor' } -C3N-02682.RNA-Seq.R1_L003.T C3N-02682 GBM RNA-Seq tumor CPT0224900009 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R1_001.fastq.gz 3870461768 FASTQ R1_L003 unaligned CPTAC3 bdabb589-3cd2-4b0d-9710-b951fc336806 78f770e27956e9ee283579768c74539a { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor' } -C3N-02682.RNA-Seq.R2_L003.T C3N-02682 GBM RNA-Seq tumor CPT0224900009 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R2_001.fastq.gz 4641618871 FASTQ R2_L003 unaligned CPTAC3 c36b01fb-a764-4899-8eaa-7df412ad8c7b c0535dc8e09ca2e6d179e20623f904c7 { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor' } -C3N-02682.RNA-Seq.transcriptome.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 046a7173-367b-48aa-9d9d-983587b46505.rna_seq.transcriptome.gdc_realn.bam 8403513286 BAM transcriptome harmonized CPTAC3 db0c3efa-92f3-4477-8abf-f33f538cf0a4 304f3d5e0d7a1def0d7da4e606d767df { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor' } +C3N-02682.RNA-Seq.chimeric.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 648e135c-b905-4eb6-9a13-3ba65e4ad2af.rna_seq.chimeric.gdc_realn.bam 37961281 BAM chimeric harmonized CPTAC3 410039f2-fbff-48a0-a02e-c80dc7418a93 3eaa26db8fc198798d9c75e6e22699ac { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor' } +C3N-02682.RNA-Seq.genomic.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 648e135c-b905-4eb6-9a13-3ba65e4ad2af.rna_seq.genomic.gdc_realn.bam 8912091018 BAM genomic harmonized CPTAC3 3a33af12-883d-434b-b09e-1271e6f5cf1f 6099a23998d9c03570a43cb479b4f040 { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor' } +C3N-02682.RNA-Seq.R1_L003.T C3N-02682 GBM RNA-Seq tumor CPT0224900009 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R1_001.fastq.gz 3870461768 FASTQ R1_L003 unaligned CPTAC3 bdabb589-3cd2-4b0d-9710-b951fc336806 78f770e27956e9ee283579768c74539a { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02682.RNA-Seq.R2_L003.T C3N-02682 GBM RNA-Seq tumor CPT0224900009 200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R2_001.fastq.gz 4641618871 FASTQ R2_L003 unaligned CPTAC3 c36b01fb-a764-4899-8eaa-7df412ad8c7b c0535dc8e09ca2e6d179e20623f904c7 { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02682.RNA-Seq.transcriptome.T.hg38 C3N-02682 GBM RNA-Seq tumor CPT0224900009 648e135c-b905-4eb6-9a13-3ba65e4ad2af.rna_seq.transcriptome.gdc_realn.bam 9478769771 BAM transcriptome harmonized CPTAC3 5908f4c4-c5c4-4f8c-8b07-329ccd08b034 16c0eafa4be5ae37c9eeafba6cbeda1e { 'aliquot_tag': 'ALQ_de88bd49', 'gdc_sample_type': 'Primary Tumor' } C3N-02682.WGS.N C3N-02682 GBM WGS blood_normal CPT0224920002 CPT0224920002.WholeGenome.RP-2158.bam 24539748739 BAM aligned CPTAC3 f0ea8630-6e1c-4904-98a2-7c2772da1ed7 d6ef5422ce8df34f3748fb80f26ff7f2 { 'aliquot_tag': 'ALQ_339a37a1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02682.WGS.N.hg38 C3N-02682 GBM WGS blood_normal CPT0224920002 5854cf9a-665a-48c0-a765-43727b62ae6d_wgs_gdc_realn.bam 73004266622 BAM harmonized CPTAC3 2771f873-7104-4a2f-a186-ee4634ea8b5d 44a5e33f364c39b44562c6f1f5b11f09 { 'aliquot_tag': 'ALQ_339a37a1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02682.WGS.T C3N-02682 GBM WGS tumor CPT0224900006 CPT0224900006.WholeGenome.RP-2158.bam 27140589506 BAM aligned CPTAC3 d07b3f98-fbba-4f88-8cd4-05b6b60fa2f4 6a97998c8531c2a5ed5a647cf81968ae { 'aliquot_tag': 'ALQ_4e37a0d8', 'gdc_sample_type': 'Primary Tumor' } @@ -32188,11 +34357,11 @@ C3N-02683.MethArray.Green.T C3N-02683 GBM Methylation Array tumor CPT0224930006 C3N-02683.MethArray.Red.T C3N-02683 GBM Methylation Array tumor CPT0224930006 204372030079_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 5eedf5aa-57e1-4eda-adfd-8dd190a63470 60cc441b70054e307b51500d9dc95f13 { 'aliquot_tag': 'ALQ_997da08', 'gdc_sample_type': 'Primary Tumor' } C3N-02683.miRNA-Seq.T C3N-02683 GBM miRNA-Seq tumor CPT0224930012 200403_UNC31-K00269_0274_AHCF7GBBXY_CGATGT_S26_L002_R1_001.unaln.bam 268795788 BAM unaligned CPTAC3 9f8c1f79-ac2c-4c9d-91ed-e1300d7c4b0d 179656880a8390577376203eaa89970f { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor' } C3N-02683.miRNA-Seq.T.hg38 C3N-02683 GBM miRNA-Seq tumor CPT0224930012 2cbef5f3-3bc6-474b-942b-4d9928326d28_mirnaseq_gdc_realn.bam 298296964 BAM harmonized CPTAC3 86cb8c5b-f827-4c92-a8ab-fef3d90b8eb3 7ca60f32150713f61f82dbd3444c7e63 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor' } -C3N-02683.RNA-Seq.chimeric.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 4117e044-e07f-49de-b181-7d5b21882782.rna_seq.chimeric.gdc_realn.bam 305428254 BAM chimeric harmonized CPTAC3 f008d6ac-878e-47af-b5be-5e155f643ac7 d1d51e14a11bd0f24c5f8e7bffa51092 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor' } -C3N-02683.RNA-Seq.genomic.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 4117e044-e07f-49de-b181-7d5b21882782.rna_seq.genomic.gdc_realn.bam 9610746029 BAM genomic harmonized CPTAC3 f6e5abf1-16d9-40c1-97b3-1b304d2b7dd0 5871b08200aaa658fd7a75e37c760ea1 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor' } -C3N-02683.RNA-Seq.R1_L007.T C3N-02683 GBM RNA-Seq tumor CPT0224930012 200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R1_001.fastq.gz 4370856638 FASTQ R1_L007 unaligned CPTAC3 f88b71c6-807d-45d8-bb45-d6f1adb722e4 1c21125d789e0e7af18a6e61b0ddcdc4 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor' } -C3N-02683.RNA-Seq.R2_L007.T C3N-02683 GBM RNA-Seq tumor CPT0224930012 200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R2_001.fastq.gz 4456238893 FASTQ R2_L007 unaligned CPTAC3 86f73dc2-f0b2-4857-9873-09673863a96a 82e5a3f4dec70d062ff644403fcbbb17 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor' } -C3N-02683.RNA-Seq.transcriptome.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 4117e044-e07f-49de-b181-7d5b21882782.rna_seq.transcriptome.gdc_realn.bam 8140867059 BAM transcriptome harmonized CPTAC3 2ec5aed4-b193-4d18-834e-47f373db4759 d40e5dd6a5bad9a061e21b6420022a25 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor' } +C3N-02683.RNA-Seq.chimeric.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 bdd09ddd-0307-407b-a83e-256932655994.rna_seq.chimeric.gdc_realn.bam 305392204 BAM chimeric harmonized CPTAC3 f14b214a-5ff1-46a7-883a-c11118856160 f1729b289ab1132542297075bd7dd583 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor' } +C3N-02683.RNA-Seq.genomic.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 bdd09ddd-0307-407b-a83e-256932655994.rna_seq.genomic.gdc_realn.bam 9611745269 BAM genomic harmonized CPTAC3 59c4ddf5-bfae-4be7-a981-43a7a322a121 de551856b7b0612855567d6b3e140108 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor' } +C3N-02683.RNA-Seq.R1_L007.T C3N-02683 GBM RNA-Seq tumor CPT0224930012 200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R1_001.fastq.gz 4370856638 FASTQ R1_L007 unaligned CPTAC3 f88b71c6-807d-45d8-bb45-d6f1adb722e4 1c21125d789e0e7af18a6e61b0ddcdc4 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02683.RNA-Seq.R2_L007.T C3N-02683 GBM RNA-Seq tumor CPT0224930012 200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R2_001.fastq.gz 4456238893 FASTQ R2_L007 unaligned CPTAC3 86f73dc2-f0b2-4857-9873-09673863a96a 82e5a3f4dec70d062ff644403fcbbb17 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02683.RNA-Seq.transcriptome.T.hg38 C3N-02683 GBM RNA-Seq tumor CPT0224930012 bdd09ddd-0307-407b-a83e-256932655994.rna_seq.transcriptome.gdc_realn.bam 9299363306 BAM transcriptome harmonized CPTAC3 3ca3cb9e-adc1-4aee-9de6-b1a6ac357610 7868efe984b36fe6bece09fd8753aa46 { 'aliquot_tag': 'ALQ_17e12f50', 'gdc_sample_type': 'Primary Tumor' } C3N-02683.WGS.N C3N-02683 GBM WGS blood_normal CPT0224950002 CPT0224950002.WholeGenome.RP-2158.bam 22007412977 BAM aligned CPTAC3 2d2be077-64ee-4be0-934e-ffa2f0c44fb0 d1b0a28f94567a0db7f69734383b86a3 { 'aliquot_tag': 'ALQ_81baebb1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02683.WGS.N.hg38 C3N-02683 GBM WGS blood_normal CPT0224950002 63e86eb1-34a0-4930-ab71-1e80bca277ed_wgs_gdc_realn.bam 67714893079 BAM harmonized CPTAC3 61819705-e22c-4d38-9cac-3d53f1d640fa 7f668186c3bb0669ea0983536e887320 { 'aliquot_tag': 'ALQ_81baebb1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02683.WGS.T C3N-02683 GBM WGS tumor CPT0224930006 CPT0224930006.WholeGenome.RP-2158.bam 20774991918 BAM aligned CPTAC3 6eced862-2a89-414c-bc4b-7c0d197bbe49 fec26ca396989f5f58b0a01727584459 { 'aliquot_tag': 'ALQ_997da08', 'gdc_sample_type': 'Primary Tumor' } @@ -32202,10 +34371,16 @@ C3N-02683.WXS.N.hg38 C3N-02683 GBM WXS blood_normal CPT0224950002 63e86eb1-34a0- C3N-02683.WXS.T C3N-02683 GBM WXS tumor CPT0224930006 CPT0224930006.WholeExome.RP-1303.bam 19826009056 BAM aligned CPTAC3 361c9812-014e-44d2-9ecd-453e0f9f99f8 5efb2348fd07a3c61b3aaa6aacb65e68 { 'aliquot_tag': 'ALQ_997da08', 'gdc_sample_type': 'Primary Tumor' } C3N-02683.WXS.T.hg38 C3N-02683 GBM WXS tumor CPT0224930006 17fb3ecc-d825-4e43-a854-3494772f2488_wxs_gdc_realn.bam 27747108695 BAM harmonized CPTAC3 69b5d037-e728-49dc-8fa6-ff955e5ace97 c7e2ce1b86a853afe0a4e01d2ec41a65 { 'aliquot_tag': 'ALQ_997da08', 'gdc_sample_type': 'Primary Tumor' } C3N-02684.miRNA-Seq.A C3N-02684 GBM miRNA-Seq tissue_normal CPT0404570010 210702_UNC32-K00270_0289_AHKJ22BBXY_CATTTT_S32_L005_R1_001.unaln.bam 289271828 BAM unaligned CPTAC3 7c1a1eed-ec0e-4ec1-9247-bbc69e7ab201 882610cb71b88ee61570ff3b4ee9a51a { 'aliquot_tag': 'ALQ_4a925630', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02684.RNA-Seq.R1_L005.A C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R1_001.fastq.gz 3762761739 FASTQ R1_L005 unaligned CPTAC3 e9d5ecfa-3887-4f7c-876b-e7addf0fa54d bd1589694b214bda8f6e3da954073675 { 'aliquot_tag': 'ALQ_4a925630', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02684.RNA-Seq.R2_L005.A C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R2_001.fastq.gz 4022996013 FASTQ R2_L005 unaligned CPTAC3 7513f50c-a395-49c5-8076-da5d97a21a2d c8686b7129d6edb71be27fd13500abce { 'aliquot_tag': 'ALQ_4a925630', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02684.miRNA-Seq.A.hg38 C3N-02684 GBM miRNA-Seq tissue_normal CPT0404570010 093cd092-2e78-41eb-a1c4-9dcfb64cbf72_mirnaseq_gdc_realn.bam 319653613 BAM harmonized CPTAC3 80235cba-341b-47d5-9716-cfb09730b6a2 16c607235d0ae0ffe3ce1f3a2f2554af { 'aliquot_tag': 'ALQ_4a925630', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02684.RNA-Seq.chimeric.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.chimeric.gdc_realn.bam 118849340 BAM chimeric harmonized CPTAC3 ac226bda-fd62-4c36-9059-731a1d562df6 181da6364d9613c57fc4198f1eb69401 { 'aliquot_tag': 'ALQ_4a925630', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02684.RNA-Seq.genomic.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.genomic.gdc_realn.bam 8285546489 BAM genomic harmonized CPTAC3 cd799b7e-354f-40ab-a95a-eb0e62225112 12ed3f21bb131c63f5ee325699f02e84 { 'aliquot_tag': 'ALQ_4a925630', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02684.RNA-Seq.R1_L005.A C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R1_001.fastq.gz 3762761739 FASTQ R1_L005 unaligned CPTAC3 e9d5ecfa-3887-4f7c-876b-e7addf0fa54d bd1589694b214bda8f6e3da954073675 { 'aliquot_tag': 'ALQ_4a925630', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02684.RNA-Seq.R2_L005.A C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 210708_UNC32-K00270_0290_BHLLHHBBXY_CATAGAGT-TGCCACCA_S18_L005_R2_001.fastq.gz 4022996013 FASTQ R2_L005 unaligned CPTAC3 7513f50c-a395-49c5-8076-da5d97a21a2d c8686b7129d6edb71be27fd13500abce { 'aliquot_tag': 'ALQ_4a925630', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02684.RNA-Seq.transcriptome.A.hg38 C3N-02684 GBM RNA-Seq tissue_normal CPT0404570010 a04f3d93-73c6-4bd3-803c-160b3644f979.rna_seq.transcriptome.gdc_realn.bam 9836334658 BAM transcriptome harmonized CPTAC3 4f171781-04c6-4c63-af25-1c69fdebaa63 2e76d5227b0dfe69e5382ab80eca7c70 { 'aliquot_tag': 'ALQ_4a925630', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02684.WXS.A C3N-02684 GBM WXS tissue_normal CPT0404570007 CPT0404570007.WholeExome.RP-1303.bam 27582047056 BAM aligned CPTAC3 d15b182d-611b-41a1-b525-b1debc36c6e4 06fd5b6938a195b1d0113a441ea06cd6 { 'aliquot_tag': 'ALQ_cdedf2d2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02684.WXS.A.hg38 C3N-02684 GBM WXS tissue_normal CPT0404570007 b94f84b6-e892-44f2-96e8-2d8d01b75a83_wxs_gdc_realn.bam 38176829942 BAM harmonized CPTAC3 8b978087-6503-4c83-bad4-b870180bbe95 356c00f9cfe0194e771fc39425119390 { 'aliquot_tag': 'ALQ_cdedf2d2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02684.WXS.N C3N-02684 GBM WXS blood_normal CPT0404640002 CPT0404640002.WholeExome.RP-1303.bam 29153735919 BAM aligned CPTAC3 01198a6c-3221-44f0-97b0-2f583b4b1f54 1f29cd19bc7b3b80490d508d49707bad { 'aliquot_tag': 'ALQ_7cb30e23', 'gdc_sample_type': 'Blood Derived Normal' } +C3N-02684.WXS.N.hg38 C3N-02684 GBM WXS blood_normal CPT0404640002 8e74fbec-acd7-4634-a057-fb7a7fdac99d_wxs_gdc_realn.bam 40509541711 BAM harmonized CPTAC3 36ea9e25-fd16-43e8-a544-62be15bf70c5 0bc2d86b95966b5a82a1e5f457c6712f { 'aliquot_tag': 'ALQ_7cb30e23', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02688.MethArray.Green.A C3N-02688 LSCC Methylation Array tissue_normal CPT0312920006 204372030076_R04C01_Grn.idat 13677890 IDAT Green NA CPTAC3 a1dad805-ac26-4af1-b7ca-571ad271f815 fa6bc94b4d886d9586c275922ca69d9a { 'aliquot_tag': 'ALQ_ced3d522', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02688.MethArray.Green.T C3N-02688 LSCC Methylation Array tumor CPT0312910006 204372030127_R04C01_Grn.idat 13677880 IDAT Green NA CPTAC3 161f8c43-043b-4d18-87e9-4526d98453c5 df1a94012402f599ed268eb01c6bee01 { 'aliquot_tag': 'ALQ_8973aff2', 'gdc_sample_type': 'Primary Tumor' } C3N-02688.MethArray.Red.A C3N-02688 LSCC Methylation Array tissue_normal CPT0312920006 204372030076_R04C01_Red.idat 13677890 IDAT Red NA CPTAC3 15b2c74b-dba2-43b6-b7e2-c578b5eddd7a 000326a874f6e98624bcf4f989dd4314 { 'aliquot_tag': 'ALQ_ced3d522', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -32214,16 +34389,16 @@ C3N-02688.miRNA-Seq.A C3N-02688 LSCC miRNA-Seq tissue_normal CPT0312920009 20051 C3N-02688.miRNA-Seq.A.hg38 C3N-02688 LSCC miRNA-Seq tissue_normal CPT0312920009 d00920ca-4e46-4bb0-aded-5cf69517f27b_mirnaseq_gdc_realn.bam 250886309 BAM harmonized CPTAC3 ebae80d1-2c0b-4b88-8d5f-86c7f31cca8d 3033fc7007bb7a107c51a59fe8e525d8 { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02688.miRNA-Seq.T C3N-02688 LSCC miRNA-Seq tumor CPT0312910009 200224_UNC31-K00269_0267_AHC722BBXY_GGCTAC_S11_L008_R1_001.unaln.bam 236071444 BAM unaligned CPTAC3 235f3879-e620-4693-98e6-2730194e2016 be6a0437c6c74509e07d2ba39ea917fc { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor' } C3N-02688.miRNA-Seq.T.hg38 C3N-02688 LSCC miRNA-Seq tumor CPT0312910009 caa1123b-8a05-4c0c-8a63-f29f2348ba74_mirnaseq_gdc_realn.bam 261205317 BAM harmonized CPTAC3 8846dcfd-79ea-4a17-bed3-85a2209cb2da 13bfdeb615c1f2b3ce1fbefc8e625530 { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor' } -C3N-02688.RNA-Seq.chimeric.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 5601ca6b-ae9e-4c00-9c02-782d3df1abb2.rna_seq.chimeric.gdc_realn.bam 43638452 BAM chimeric harmonized CPTAC3 7ac8a43c-c3d6-4ddc-8b6e-6adc4d211c7e f7f0eab93921dce2cec8960f2f576f3a { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02688.RNA-Seq.chimeric.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 870872b5-7f8d-4da6-aa37-597ad147e25a.rna_seq.chimeric.gdc_realn.bam 31195130 BAM chimeric harmonized CPTAC3 d657995c-2332-4baa-952c-e31783b8a598 c6696251b421cb6c755534f1fc5310cc { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor' } -C3N-02688.RNA-Seq.genomic.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 5601ca6b-ae9e-4c00-9c02-782d3df1abb2.rna_seq.genomic.gdc_realn.bam 9980859605 BAM genomic harmonized CPTAC3 5ef8bfdc-f725-45ec-bfb1-9d1f6af47c00 9b3653348238290234468e8cc69753d2 { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02688.RNA-Seq.genomic.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 870872b5-7f8d-4da6-aa37-597ad147e25a.rna_seq.genomic.gdc_realn.bam 7384566044 BAM genomic harmonized CPTAC3 12eaa6e4-fdbe-4a19-97f8-6d50fe78a928 d16d8c7468c391b3331020c0e755656d { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor' } -C3N-02688.RNA-Seq.R1_L003.T C3N-02688 LSCC RNA-Seq tumor CPT0312910009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L003_R1_001.fastq.gz 3631020778 FASTQ R1_L003 unaligned CPTAC3 c124c4a7-51e6-488f-a793-61b93eb0e118 a2fd520856f22ad7e887edefcfd5b979 { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor' } -C3N-02688.RNA-Seq.R1_L005.A C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L005_R1_001.fastq.gz 5068314421 FASTQ R1_L005 unaligned CPTAC3 c7fc7a30-bc1e-4548-9c65-b57f1ccbc2f8 4698785e852794e60bbd246691f278ef { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02688.RNA-Seq.R2_L003.T C3N-02688 LSCC RNA-Seq tumor CPT0312910009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L003_R2_001.fastq.gz 3918387827 FASTQ R2_L003 unaligned CPTAC3 1d7a49f1-cb96-4a37-8507-0447f00fd37f 3a8e78eab80321592656a81aa7687fd6 { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor' } -C3N-02688.RNA-Seq.R2_L005.A C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L005_R2_001.fastq.gz 5446340967 FASTQ R2_L005 unaligned CPTAC3 a753ba88-e961-4f03-ae0d-9ebc591fb1d3 e162e5125a60d6d9aa9203a83a04721a { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02688.RNA-Seq.transcriptome.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 5601ca6b-ae9e-4c00-9c02-782d3df1abb2.rna_seq.transcriptome.gdc_realn.bam 10794767770 BAM transcriptome harmonized CPTAC3 ca696ba7-35b3-410e-b161-db8fcfcc5a19 caf0c623bc00f5d5cba38241c6b61ea0 { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02688.RNA-Seq.transcriptome.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 870872b5-7f8d-4da6-aa37-597ad147e25a.rna_seq.transcriptome.gdc_realn.bam 9248789696 BAM transcriptome harmonized CPTAC3 e7060b4d-0a3b-4af5-81ee-6831417d4005 35197df81e072ca218a4e84d12fdcb05 { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor' } +C3N-02688.RNA-Seq.chimeric.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 2458738a-2291-4657-b553-ac0ca22c0f98.rna_seq.chimeric.gdc_realn.bam 43614935 BAM chimeric harmonized CPTAC3 4472fc85-234a-43a1-b129-ae80b9f72d57 3edb63a90f03ca4f7315ee0b0d00a37b { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02688.RNA-Seq.chimeric.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 4588538e-4564-486e-9dbe-dfdff2dc7c1b.rna_seq.chimeric.gdc_realn.bam 31188718 BAM chimeric harmonized CPTAC3 5f447095-3d00-4804-bce2-1bd49171cffe e7cd74581eef61e54cccbadc30993cc0 { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor' } +C3N-02688.RNA-Seq.genomic.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 2458738a-2291-4657-b553-ac0ca22c0f98.rna_seq.genomic.gdc_realn.bam 9982348716 BAM genomic harmonized CPTAC3 68571263-2918-4bb6-9ebf-3e2cf212d696 899ac9458f6b90c33c22c47391d413ba { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02688.RNA-Seq.genomic.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 4588538e-4564-486e-9dbe-dfdff2dc7c1b.rna_seq.genomic.gdc_realn.bam 7386428404 BAM genomic harmonized CPTAC3 751a4f5c-fd7a-404f-a0bd-8e383bc2e358 ef54cb73508868fcd65874210337572f { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor' } +C3N-02688.RNA-Seq.R1_L003.T C3N-02688 LSCC RNA-Seq tumor CPT0312910009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L003_R1_001.fastq.gz 3631020778 FASTQ R1_L003 unaligned CPTAC3 c124c4a7-51e6-488f-a793-61b93eb0e118 a2fd520856f22ad7e887edefcfd5b979 { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02688.RNA-Seq.R1_L005.A C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L005_R1_001.fastq.gz 5068314421 FASTQ R1_L005 unaligned CPTAC3 c7fc7a30-bc1e-4548-9c65-b57f1ccbc2f8 4698785e852794e60bbd246691f278ef { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02688.RNA-Seq.R2_L003.T C3N-02688 LSCC RNA-Seq tumor CPT0312910009 200505_UNC32-K00270_0245_AHH5FVBBXY_TCTCTACT-CGCGGTTC_S11_L003_R2_001.fastq.gz 3918387827 FASTQ R2_L003 unaligned CPTAC3 1d7a49f1-cb96-4a37-8507-0447f00fd37f 3a8e78eab80321592656a81aa7687fd6 { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02688.RNA-Seq.R2_L005.A C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L005_R2_001.fastq.gz 5446340967 FASTQ R2_L005 unaligned CPTAC3 a753ba88-e961-4f03-ae0d-9ebc591fb1d3 e162e5125a60d6d9aa9203a83a04721a { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02688.RNA-Seq.transcriptome.A.hg38 C3N-02688 LSCC RNA-Seq tissue_normal CPT0312920009 2458738a-2291-4657-b553-ac0ca22c0f98.rna_seq.transcriptome.gdc_realn.bam 12289175155 BAM transcriptome harmonized CPTAC3 052f51d1-4090-4f33-99e9-31f6c48596d6 b73440a62092ffd04819a9ff924bc44f { 'aliquot_tag': 'ALQ_5e6cc8b3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02688.RNA-Seq.transcriptome.T.hg38 C3N-02688 LSCC RNA-Seq tumor CPT0312910009 4588538e-4564-486e-9dbe-dfdff2dc7c1b.rna_seq.transcriptome.gdc_realn.bam 10379708663 BAM transcriptome harmonized CPTAC3 87150f33-c16c-4119-b4c6-899ca9174d37 068bdc9bd0176eda5650f44c11e1bd79 { 'aliquot_tag': 'ALQ_19ccb263', 'gdc_sample_type': 'Primary Tumor' } C3N-02688.WGS.N C3N-02688 LSCC WGS blood_normal CPT0312930002 CPT0312930002.WholeGenome.RP-2158.bam 24879180435 BAM aligned CPTAC3 19002fae-edee-4df2-90de-0f70b92d726d e00c75b0586af3b9e715e34583848336 { 'aliquot_tag': 'ALQ_f4de388b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02688.WGS.N.hg38 C3N-02688 LSCC WGS blood_normal CPT0312930002 7cd60c64-ed69-43e0-84e6-b067c3a17c7b_wgs_gdc_realn.bam 73583032406 BAM harmonized CPTAC3 3874521a-91da-4fe6-aa99-5c5a25f74594 92d8df89072bbfe4381076b05b490fb1 { 'aliquot_tag': 'ALQ_f4de388b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02688.WGS.T C3N-02688 LSCC WGS tumor CPT0312910006 CPT0312910006.WholeGenome.RP-2158.bam 25085524970 BAM aligned CPTAC3 9915a0e2-3020-4e79-9fc2-ad6176c13c71 a791db082febbf86d9eb63f941ec7e1d { 'aliquot_tag': 'ALQ_8973aff2', 'gdc_sample_type': 'Primary Tumor' } @@ -32239,12 +34414,15 @@ C3N-02693.MethArray.Red.T C3N-02693 HNSCC Methylation Array tumor CPT0226130006 C3N-02693.miRNA-Seq.T C3N-02693 HNSCC miRNA-Seq tumor CPT0226130009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCATTC_S45_L004_R1_001.unaln.bam 164676057 BAM unaligned CPTAC3 28f4bbe1-0a8d-4576-9db5-0d56d055f1ac 4e3fef2fedb109e1d20e9ed4bad655ae { 'aliquot_tag': 'ALQ_e2e454dd', 'gdc_sample_type': 'Primary Tumor' } C3N-02693.miRNA-Seq.T.hg38 C3N-02693 HNSCC miRNA-Seq tumor CPT0226130009 155a4a50-aa68-4e0a-8993-986a2951ebc2_mirnaseq_gdc_realn.bam 188432018 BAM harmonized CPTAC3 b5121d1e-bef0-4b13-a48c-5d2d9508ac07 2cf4aabdd1db96a0f3af8f2faf7d62f0 { 'aliquot_tag': 'ALQ_e2e454dd', 'gdc_sample_type': 'Primary Tumor' } C3N-02693.RNA-Seq.chimeric.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 c824c993-b307-4017-9dc4-4dd37b33e5ba.rna_seq.chimeric.gdc_realn.bam 177560032 BAM chimeric harmonized CPTAC3 ad36e392-2643-4a20-b3c1-da30380327a6 ab36d46f8ed1a18eb58126fe6f0c37be { 'aliquot_tag': 'ALQ_e2e454dd', 'gdc_sample_type': 'Primary Tumor' } -C3N-02693.RNA-Seq.genomic.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 c824c993-b307-4017-9dc4-4dd37b33e5ba.rna_seq.genomic.gdc_realn.bam 8040267838 BAM genomic harmonized CPTAC3 f762af62-336a-45d6-b86b-da3eac8353a4 9bc5d83e829991e964135984a9628603 { 'aliquot_tag': 'ALQ_e2e454dd', 'gdc_sample_type': 'Primary Tumor' } -C3N-02693.RNA-Seq.R1_L001.T C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 190411_UNC31-K00269_0208_BH3W3KBBXY_CGTACG_S4_L001_R1_001.fastq.gz 3871388385 FASTQ R1_L001 unaligned CPTAC3 74e51ef8-289c-4bff-aafc-4ee240cfc193 d55c672d1d02e47fe1e9f1041dac0f0a { 'aliquot_tag': 'ALQ_e2e454dd', 'gdc_sample_type': 'Primary Tumor' } -C3N-02693.RNA-Seq.R1_.T C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 20210729_P3_D12_WB7988-Plate3_S48_R1_001.fastq.gz 4600491071 FASTQ R1_ unaligned CPTAC3 84f10a99-61c7-4dca-b385-cc6a9607bf63 433cad8d23755fae0c4c837094b0d8f5 { 'aliquot_tag': 'ALQ_27f8b7f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-02693.RNA-Seq.R2_L001.T C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 190411_UNC31-K00269_0208_BH3W3KBBXY_CGTACG_S4_L001_R2_001.fastq.gz 4226618980 FASTQ R2_L001 unaligned CPTAC3 9b8d3278-927b-4b52-a93c-bfffa56c06ac af6456927b51bcc063ccf8a95e8a2bfd { 'aliquot_tag': 'ALQ_e2e454dd', 'gdc_sample_type': 'Primary Tumor' } -C3N-02693.RNA-Seq.R2_.T C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 20210729_P3_D12_WB7988-Plate3_S48_R2_001.fastq.gz 4838257828 FASTQ R2_ unaligned CPTAC3 dd5c5576-1205-4307-8461-6ab5077af79b 4e564c016206605b07034addf027cedc { 'aliquot_tag': 'ALQ_27f8b7f3', 'gdc_sample_type': 'Primary Tumor' } +C3N-02693.RNA-Seq.chimeric.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 46d72307-43a9-4cc8-9193-d680dfa7c3a2.rna_seq.chimeric.gdc_realn.bam 99384268 BAM chimeric harmonized CPTAC3 c3d56e1a-a21b-40da-9578-9bc4d4c4de11 16b2a442037b8976baae330e1f5a7e95 { 'aliquot_tag': 'ALQ_27f8b7f3', 'gdc_sample_type': 'Primary Tumor' } +C3N-02693.RNA-Seq.genomic.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 c824c993-b307-4017-9dc4-4dd37b33e5ba.rna_seq.genomic.gdc_realn.bam 8040267838 BAM genomic harmonized CPTAC3 2cf13d19-b301-4a97-8264-59ee2c5716f5 9bc5d83e829991e964135984a9628603 { 'aliquot_tag': 'ALQ_e2e454dd', 'gdc_sample_type': 'Primary Tumor' } +C3N-02693.RNA-Seq.genomic.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 46d72307-43a9-4cc8-9193-d680dfa7c3a2.rna_seq.genomic.gdc_realn.bam 7697301844 BAM genomic harmonized CPTAC3 82a9dc65-077f-4a3c-9d60-a1542f6b30fc 2a0b13a1af12ff982faa86ce581d99a2 { 'aliquot_tag': 'ALQ_27f8b7f3', 'gdc_sample_type': 'Primary Tumor' } +C3N-02693.RNA-Seq.R1_L001.T C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 190411_UNC31-K00269_0208_BH3W3KBBXY_CGTACG_S4_L001_R1_001.fastq.gz 3871388385 FASTQ R1_L001 unaligned CPTAC3 74e51ef8-289c-4bff-aafc-4ee240cfc193 d55c672d1d02e47fe1e9f1041dac0f0a { 'aliquot_tag': 'ALQ_e2e454dd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02693.RNA-Seq.R2_L001.T C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 190411_UNC31-K00269_0208_BH3W3KBBXY_CGTACG_S4_L001_R2_001.fastq.gz 4226618980 FASTQ R2_L001 unaligned CPTAC3 9b8d3278-927b-4b52-a93c-bfffa56c06ac af6456927b51bcc063ccf8a95e8a2bfd { 'aliquot_tag': 'ALQ_e2e454dd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02693.RNA-Seq.T C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 20210729_P3_D12_WB7988-Plate3_S48_R1_001.fastq.gz 4600491071 FASTQ unaligned CPTAC3 84f10a99-61c7-4dca-b385-cc6a9607bf63 433cad8d23755fae0c4c837094b0d8f5 +C3N-02693.RNA-Seq.T C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 20210729_P3_D12_WB7988-Plate3_S48_R2_001.fastq.gz 4838257828 FASTQ unaligned CPTAC3 dd5c5576-1205-4307-8461-6ab5077af79b 4e564c016206605b07034addf027cedc C3N-02693.RNA-Seq.transcriptome.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0226130009 c824c993-b307-4017-9dc4-4dd37b33e5ba.rna_seq.transcriptome.gdc_realn.bam 10307178689 BAM transcriptome harmonized CPTAC3 3951e3ed-37cf-4108-9291-597b5494b7ea 658640a4c77d1bd7b6c333e102bc932a { 'aliquot_tag': 'ALQ_e2e454dd', 'gdc_sample_type': 'Primary Tumor' } +C3N-02693.RNA-Seq.transcriptome.T.hg38 C3N-02693 HNSCC RNA-Seq tumor CPT0315110011 46d72307-43a9-4cc8-9193-d680dfa7c3a2.rna_seq.transcriptome.gdc_realn.bam 5135834467 BAM transcriptome harmonized CPTAC3 c7533ffa-145f-40ee-bcd2-89f304c500f7 1a6669497d09f9b59b67c966b7b6bd8b { 'aliquot_tag': 'ALQ_27f8b7f3', 'gdc_sample_type': 'Primary Tumor' } C3N-02693.WGS.N C3N-02693 HNSCC WGS blood_normal CPT0226170002 CPT0226170002.WholeGenome.RP-1303.bam 62103375088 BAM aligned CPTAC3 00226cb7-c3be-49dc-bd18-5b0c77d6ef9e 92f8ff0122dc40ec41e075344415724e { 'aliquot_tag': 'ALQ_80b62b95', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02693.WGS.N.hg38 C3N-02693 HNSCC WGS blood_normal CPT0226170002 d1579373-d5d8-47b8-9623-c7f97cb20030_wgs_gdc_realn.bam 91781549091 BAM harmonized CPTAC3 fdf282ee-dd34-4bc8-adff-78d331b16b68 10e787e6d0abae2166ba3d3b51c4dcfd { 'aliquot_tag': 'ALQ_80b62b95', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02693.WGS.T C3N-02693 HNSCC WGS tumor CPT0226130006 CPT0226130006.WholeGenome.RP-1303.bam 84613827791 BAM aligned CPTAC3 b53bbc0f-3ebb-43fa-89c8-2b82b67c2265 38979758c694d4eaffc3e7d035a911a1 { 'aliquot_tag': 'ALQ_725b494c', 'gdc_sample_type': 'Primary Tumor' } @@ -32258,12 +34436,15 @@ C3N-02694.MethArray.Red.T C3N-02694 HNSCC Methylation Array tumor CPT0244890010 C3N-02694.miRNA-Seq.T C3N-02694 HNSCC miRNA-Seq tumor CPT0244890007 190228_UNC32-K00270_0151_AHYLY3BBXX_CCGTCC_S16_L005_R1_001.unaln.bam 206425100 BAM unaligned CPTAC3 363b4fcc-a43e-48bc-91b6-eb522a53145a 9ab570bcee0e4c9757d5e6e12a7c7c25 { 'aliquot_tag': 'ALQ_3913281d', 'gdc_sample_type': 'Primary Tumor' } C3N-02694.miRNA-Seq.T.hg38 C3N-02694 HNSCC miRNA-Seq tumor CPT0244890007 861025db-c76e-4fa8-823f-bd6ab238146b_mirnaseq_gdc_realn.bam 231489108 BAM harmonized CPTAC3 32c3524a-e00f-4c66-b6e5-7654a7989a11 d0d470013f29163084b23c047fb85670 { 'aliquot_tag': 'ALQ_3913281d', 'gdc_sample_type': 'Primary Tumor' } C3N-02694.RNA-Seq.chimeric.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 9339834f-687d-497a-836b-f1576aa56752.rna_seq.chimeric.gdc_realn.bam 44366750 BAM chimeric harmonized CPTAC3 174cb6dc-7bf1-4c9d-b6fe-8213f1128202 421bd9b70a021543286b7fadcd0c7705 { 'aliquot_tag': 'ALQ_3913281d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02694.RNA-Seq.genomic.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 9339834f-687d-497a-836b-f1576aa56752.rna_seq.genomic.gdc_realn.bam 9642664716 BAM genomic harmonized CPTAC3 99ef5d47-2047-4d5a-95d6-f54816f33ab2 8c298f58b639b0c9ff2278222b1ab80a { 'aliquot_tag': 'ALQ_3913281d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02694.RNA-Seq.R1_L006.T C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 190411_UNC31-K00269_0208_BH3W3KBBXY_AATCCGGA-CTACAGTT_S28_L006_R1_001.fastq.gz 4412189824 FASTQ R1_L006 unaligned CPTAC3 6f6a88ca-3ce8-48d3-bc9c-3310f29ef266 33665d4dbc96d0607f309e78c721b6bf { 'aliquot_tag': 'ALQ_3913281d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02694.RNA-Seq.R1_.T C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 20210723_P2_A7_WB7988-plate2_S7_R1_001.fastq.gz 6167749121 FASTQ R1_ unaligned CPTAC3 02fb8999-d5d4-42c2-a7de-ebdbb1506fca f55a108ea2463164c8b09d75b1b62d58 { 'aliquot_tag': 'ALQ_2691c069', 'gdc_sample_type': 'Primary Tumor' } -C3N-02694.RNA-Seq.R2_L006.T C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 190411_UNC31-K00269_0208_BH3W3KBBXY_AATCCGGA-CTACAGTT_S28_L006_R2_001.fastq.gz 4977946401 FASTQ R2_L006 unaligned CPTAC3 61d55a69-ceb4-46cd-8fae-36e7df6467d2 d240d4d92807aa25000d26c3b4f8c0a5 { 'aliquot_tag': 'ALQ_3913281d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02694.RNA-Seq.R2_.T C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 20210723_P2_A7_WB7988-plate2_S7_R2_001.fastq.gz 6280012353 FASTQ R2_ unaligned CPTAC3 cd666a5b-e253-4a56-994a-b87b88765d66 988623d606e9c0bd66adf595b3bf94dd { 'aliquot_tag': 'ALQ_2691c069', 'gdc_sample_type': 'Primary Tumor' } +C3N-02694.RNA-Seq.chimeric.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 e8ebc9d1-c84b-4a29-a970-4e70c6f2fbc1.rna_seq.chimeric.gdc_realn.bam 221097051 BAM chimeric harmonized CPTAC3 5bfdf9b2-bf3f-45fc-9178-4c43a721e672 9adc842c3ce731169cbf2d037a77c300 { 'aliquot_tag': 'ALQ_2691c069', 'gdc_sample_type': 'Primary Tumor' } +C3N-02694.RNA-Seq.genomic.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 9339834f-687d-497a-836b-f1576aa56752.rna_seq.genomic.gdc_realn.bam 9642664716 BAM genomic harmonized CPTAC3 1d7fa6a0-98a0-4b55-8e1f-093a249e8c06 8c298f58b639b0c9ff2278222b1ab80a { 'aliquot_tag': 'ALQ_3913281d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02694.RNA-Seq.genomic.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 e8ebc9d1-c84b-4a29-a970-4e70c6f2fbc1.rna_seq.genomic.gdc_realn.bam 10165314798 BAM genomic harmonized CPTAC3 ba8b422e-584b-44db-9e9c-7707ab72f1e6 72b4b6561356ee122c9c92e2d1ff6d42 { 'aliquot_tag': 'ALQ_2691c069', 'gdc_sample_type': 'Primary Tumor' } +C3N-02694.RNA-Seq.R1_L006.T C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 190411_UNC31-K00269_0208_BH3W3KBBXY_AATCCGGA-CTACAGTT_S28_L006_R1_001.fastq.gz 4412189824 FASTQ R1_L006 unaligned CPTAC3 6f6a88ca-3ce8-48d3-bc9c-3310f29ef266 33665d4dbc96d0607f309e78c721b6bf { 'aliquot_tag': 'ALQ_3913281d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02694.RNA-Seq.R2_L006.T C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 190411_UNC31-K00269_0208_BH3W3KBBXY_AATCCGGA-CTACAGTT_S28_L006_R2_001.fastq.gz 4977946401 FASTQ R2_L006 unaligned CPTAC3 61d55a69-ceb4-46cd-8fae-36e7df6467d2 d240d4d92807aa25000d26c3b4f8c0a5 { 'aliquot_tag': 'ALQ_3913281d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02694.RNA-Seq.T C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 20210723_P2_A7_WB7988-plate2_S7_R1_001.fastq.gz 6167749121 FASTQ unaligned CPTAC3 02fb8999-d5d4-42c2-a7de-ebdbb1506fca f55a108ea2463164c8b09d75b1b62d58 +C3N-02694.RNA-Seq.T C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 20210723_P2_A7_WB7988-plate2_S7_R2_001.fastq.gz 6280012353 FASTQ unaligned CPTAC3 cd666a5b-e253-4a56-994a-b87b88765d66 988623d606e9c0bd66adf595b3bf94dd C3N-02694.RNA-Seq.transcriptome.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0244890007 9339834f-687d-497a-836b-f1576aa56752.rna_seq.transcriptome.gdc_realn.bam 12502426721 BAM transcriptome harmonized CPTAC3 3bc315ec-df6c-4813-89f6-3a13aa9f18d5 856afe4b483d4e7ba0822c2d29215ff9 { 'aliquot_tag': 'ALQ_3913281d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02694.RNA-Seq.transcriptome.T.hg38 C3N-02694 HNSCC RNA-Seq tumor CPT0353360001 e8ebc9d1-c84b-4a29-a970-4e70c6f2fbc1.rna_seq.transcriptome.gdc_realn.bam 5419271889 BAM transcriptome harmonized CPTAC3 2705950e-a145-4b04-bb2c-0394985e64d8 2236f09e0e285c55370f1f691cfbfce7 { 'aliquot_tag': 'ALQ_2691c069', 'gdc_sample_type': 'Primary Tumor' } C3N-02694.WGS.N C3N-02694 HNSCC WGS blood_normal CPT0244930002 CPT0244930002.WholeGenome.RP-1303.bam 93171397447 BAM aligned CPTAC3 10aae5db-058f-4c0f-9d1d-752d465a0650 074c2e397743b5069ae4e1e44b125942 { 'aliquot_tag': 'ALQ_c8951796', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02694.WGS.N.hg38 C3N-02694 HNSCC WGS blood_normal CPT0244930002 5032a164-9956-4fa5-acea-46f50f7eb1dd_wgs_gdc_realn.bam 136426212143 BAM harmonized CPTAC3 c8377306-0b3c-4195-b67e-32365368c6e9 b2d7c7a3d299caf39c097729de381d86 { 'aliquot_tag': 'ALQ_c8951796', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02694.WGS.T C3N-02694 HNSCC WGS tumor CPT0244890010 CPT0244890010.WholeGenome.RP-1303.bam 57056337315 BAM aligned CPTAC3 83bf11f5-fd3e-4243-bdc2-5353e0bae0ab c538dcea2d72f029793d594fdc832071 { 'aliquot_tag': 'ALQ_be6c8cff', 'gdc_sample_type': 'Primary Tumor' } @@ -32277,12 +34458,15 @@ C3N-02695.MethArray.Red.T C3N-02695 HNSCC Methylation Array tumor CPT0244940010 C3N-02695.miRNA-Seq.T C3N-02695 HNSCC miRNA-Seq tumor CPT0244940007 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L005_R1_001.unaln.bam 165022965 BAM unaligned CPTAC3 33a8747f-d204-4077-9dd8-1a66a08d3718 471795e6a03d93e9f1ded1a23d39339f { 'aliquot_tag': 'ALQ_adf3f09', 'gdc_sample_type': 'Primary Tumor' } C3N-02695.miRNA-Seq.T.hg38 C3N-02695 HNSCC miRNA-Seq tumor CPT0244940007 ed28d012-5e4d-4e77-a8b1-32daa1992211_mirnaseq_gdc_realn.bam 182293281 BAM harmonized CPTAC3 67bf1c52-f6b2-4a5b-973f-3997ca806e43 85defd3c5a1816cdfa60a5ad0de6dc42 { 'aliquot_tag': 'ALQ_adf3f09', 'gdc_sample_type': 'Primary Tumor' } C3N-02695.RNA-Seq.chimeric.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 00891109-a669-4f4e-b25f-b6bb5ffde417.rna_seq.chimeric.gdc_realn.bam 39583534 BAM chimeric harmonized CPTAC3 8ff5777c-666f-49ee-9b2a-910c646b5e4e 35b063e987dfb0b9413d5afe4f50ec4b { 'aliquot_tag': 'ALQ_adf3f09', 'gdc_sample_type': 'Primary Tumor' } -C3N-02695.RNA-Seq.genomic.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 00891109-a669-4f4e-b25f-b6bb5ffde417.rna_seq.genomic.gdc_realn.bam 10172193440 BAM genomic harmonized CPTAC3 df0e899f-45fa-406c-b19e-fd165bb58516 a91196bb1dbf0265ed221e468c15a9db { 'aliquot_tag': 'ALQ_adf3f09', 'gdc_sample_type': 'Primary Tumor' } -C3N-02695.RNA-Seq.R1_L007.T C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 190411_UNC31-K00269_0208_BH3W3KBBXY_TAATACAG-ATATTCAC_S29_L007_R1_001.fastq.gz 4558496841 FASTQ R1_L007 unaligned CPTAC3 f2ba1302-ceab-42a5-b7e7-01023c19cb88 369274d947660f1edcde3591cc0e08b4 { 'aliquot_tag': 'ALQ_adf3f09', 'gdc_sample_type': 'Primary Tumor' } -C3N-02695.RNA-Seq.R1_.T C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 20210806_P4_2_WB7988-plate4_S27_R1_001.fastq.gz 3935541562 FASTQ R1_ unaligned CPTAC3 8cf5b98a-33d5-4963-b543-4cfccab04b63 66aba162234355d9686083a43ab5ca9b { 'aliquot_tag': 'ALQ_a4c157b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02695.RNA-Seq.R2_L007.T C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 190411_UNC31-K00269_0208_BH3W3KBBXY_TAATACAG-ATATTCAC_S29_L007_R2_001.fastq.gz 5075426698 FASTQ R2_L007 unaligned CPTAC3 6137e440-7a72-42e9-adf9-62473175c411 c53d2b82a30e75fd0cef43c959281a53 { 'aliquot_tag': 'ALQ_adf3f09', 'gdc_sample_type': 'Primary Tumor' } -C3N-02695.RNA-Seq.R2_.T C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 20210806_P4_2_WB7988-plate4_S27_R2_001.fastq.gz 3789177374 FASTQ R2_ unaligned CPTAC3 51cc4873-048b-4623-9115-f64abec58f85 f1b32accaa8e4c219f559dbccad82072 { 'aliquot_tag': 'ALQ_a4c157b8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02695.RNA-Seq.chimeric.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 cb0b6ca6-4f93-4786-b026-1e663b77f855.rna_seq.chimeric.gdc_realn.bam 22780574 BAM chimeric harmonized CPTAC3 825e9b9c-b47b-40b3-a953-b89707aced7c de274a3da1d576382bd28ef40764298a { 'aliquot_tag': 'ALQ_a4c157b8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02695.RNA-Seq.genomic.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 00891109-a669-4f4e-b25f-b6bb5ffde417.rna_seq.genomic.gdc_realn.bam 10172193440 BAM genomic harmonized CPTAC3 b9bad19b-d11e-4701-ba53-1c4a40e60c80 a91196bb1dbf0265ed221e468c15a9db { 'aliquot_tag': 'ALQ_adf3f09', 'gdc_sample_type': 'Primary Tumor' } +C3N-02695.RNA-Seq.genomic.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 cb0b6ca6-4f93-4786-b026-1e663b77f855.rna_seq.genomic.gdc_realn.bam 19181571666 BAM genomic harmonized CPTAC3 c9bef1fb-65cc-48be-b028-63571f7d144f 2e157dbd30a4e0db740c637633123531 { 'aliquot_tag': 'ALQ_a4c157b8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02695.RNA-Seq.R1_L007.T C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 190411_UNC31-K00269_0208_BH3W3KBBXY_TAATACAG-ATATTCAC_S29_L007_R1_001.fastq.gz 4558496841 FASTQ R1_L007 unaligned CPTAC3 f2ba1302-ceab-42a5-b7e7-01023c19cb88 369274d947660f1edcde3591cc0e08b4 { 'aliquot_tag': 'ALQ_adf3f09', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02695.RNA-Seq.R2_L007.T C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 190411_UNC31-K00269_0208_BH3W3KBBXY_TAATACAG-ATATTCAC_S29_L007_R2_001.fastq.gz 5075426698 FASTQ R2_L007 unaligned CPTAC3 6137e440-7a72-42e9-adf9-62473175c411 c53d2b82a30e75fd0cef43c959281a53 { 'aliquot_tag': 'ALQ_adf3f09', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02695.RNA-Seq.T C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 20210806_P4_2_WB7988-plate4_S27_R1_001.fastq.gz 3935541562 FASTQ unaligned CPTAC3 8cf5b98a-33d5-4963-b543-4cfccab04b63 66aba162234355d9686083a43ab5ca9b +C3N-02695.RNA-Seq.T C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 20210806_P4_2_WB7988-plate4_S27_R2_001.fastq.gz 3789177374 FASTQ unaligned CPTAC3 51cc4873-048b-4623-9115-f64abec58f85 f1b32accaa8e4c219f559dbccad82072 C3N-02695.RNA-Seq.transcriptome.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0244940007 00891109-a669-4f4e-b25f-b6bb5ffde417.rna_seq.transcriptome.gdc_realn.bam 14225142264 BAM transcriptome harmonized CPTAC3 41776784-6f55-4995-96f8-1e22bb5a8d1f f83f4a15b517030e2fc54a47f9e85ad6 { 'aliquot_tag': 'ALQ_adf3f09', 'gdc_sample_type': 'Primary Tumor' } +C3N-02695.RNA-Seq.transcriptome.T.hg38 C3N-02695 HNSCC RNA-Seq tumor CPT0353390001 cb0b6ca6-4f93-4786-b026-1e663b77f855.rna_seq.transcriptome.gdc_realn.bam 3304748993 BAM transcriptome harmonized CPTAC3 a8a3d354-0d44-4b81-8471-a6fa9683ecc7 9c196d4eb46575f1f2fa4c3a3df1c962 { 'aliquot_tag': 'ALQ_a4c157b8', 'gdc_sample_type': 'Primary Tumor' } C3N-02695.WGS.N C3N-02695 HNSCC WGS blood_normal CPT0245000002 CPT0245000002.WholeGenome.RP-1303.bam 55578416635 BAM aligned CPTAC3 675ef008-63cb-4c13-933f-a46efe0d1c85 99f5b52cbf1007d79ba4e6e83f08d47b { 'aliquot_tag': 'ALQ_e4d373a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02695.WGS.N.hg38 C3N-02695 HNSCC WGS blood_normal CPT0245000002 280e96da-7858-45c8-9e2b-1cd59b3fa4a5_wgs_gdc_realn.bam 81606449915 BAM harmonized CPTAC3 abe6c00b-6d93-454a-b545-0b39ee75b586 43478cc0434bc03959f524e42ff536a5 { 'aliquot_tag': 'ALQ_e4d373a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02695.WGS.T C3N-02695 HNSCC WGS tumor CPT0244940010 CPT0244940010.WholeGenome.RP-1303.bam 90185006269 BAM aligned CPTAC3 d82d6503-897e-4691-9585-bf1080dc7e86 1f110f2babc0e13847a8a31e67ff51bc { 'aliquot_tag': 'ALQ_8da09beb', 'gdc_sample_type': 'Primary Tumor' } @@ -32291,34 +34475,43 @@ C3N-02695.WXS.N C3N-02695 HNSCC WXS blood_normal CPT0245000002 CPT0245000002.Who C3N-02695.WXS.N.hg38 C3N-02695 HNSCC WXS blood_normal CPT0245000002 280e96da-7858-45c8-9e2b-1cd59b3fa4a5_wxs_gdc_realn.bam 33321790265 BAM harmonized CPTAC3 254a5b1d-3581-4940-a0a6-1f9d0feb4cc6 7eef1e4345ef339c1915948d7b22bb4f { 'aliquot_tag': 'ALQ_e4d373a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02695.WXS.T C3N-02695 HNSCC WXS tumor CPT0244940010 CPT0244940010.WholeExome.RP-1303.bam 48153539053 BAM aligned CPTAC3 2d58c04b-135a-46f5-8e07-78cd8c22e4df 7743fb59f788c3dc1d6293581c25268e { 'aliquot_tag': 'ALQ_8da09beb', 'gdc_sample_type': 'Primary Tumor' } C3N-02695.WXS.T.hg38 C3N-02695 HNSCC WXS tumor CPT0244940010 ed4abe3e-4046-4eb6-9760-036fd53f3af5_wxs_gdc_realn.bam 65755098091 BAM harmonized CPTAC3 652a39ee-ec5d-4f2d-9344-ba1f77d6ae74 bbd99ea38188af28a1671bc2073cb4e6 { 'aliquot_tag': 'ALQ_8da09beb', 'gdc_sample_type': 'Primary Tumor' } -C3N-02696.ANN_35d1d74b.RNA-Seq.chimeric.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 919a79c7-d6c1-4fca-a00c-55b29a3eee7e.rna_seq.chimeric.gdc_realn.bam 527730577 BAM chimeric harmonized CPTAC3 b0e07c5e-a0e9-46ef-9dbb-dbb1188c1067 bfa4f0496fca2145c15d429d82d642d6 { 'aliquot_tag': 'ANN_35d1d74b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02696.ANN_35d1d74b.RNA-Seq.genomic.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 919a79c7-d6c1-4fca-a00c-55b29a3eee7e.rna_seq.genomic.gdc_realn.bam 12805894120 BAM genomic harmonized CPTAC3 da4f629c-78c4-4f0d-8ff9-3f67959e3aba 2ae5ebf4c55dd977899b7ced87475177 { 'aliquot_tag': 'ANN_35d1d74b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02696.ANN_35d1d74b.RNA-Seq.R1_L005.T C3N-02696 PDA RNA-Seq tumor CPT0187720029 200807_UNC32-K00270_0255_AHHY2WBBXY_CATAGAGT-TGCCACCA_S2_L005_R1_001.fastq.gz 5395654595 FASTQ R1_L005 unaligned CPTAC3 d21f8288-6844-4693-9f81-781a52b7c925 19b83578d3544646e37a0408704a5974 { 'aliquot_tag': 'ANN_35d1d74b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02696.ANN_35d1d74b.RNA-Seq.R2_L005.T C3N-02696 PDA RNA-Seq tumor CPT0187720029 200807_UNC32-K00270_0255_AHHY2WBBXY_CATAGAGT-TGCCACCA_S2_L005_R2_001.fastq.gz 6089753546 FASTQ R2_L005 unaligned CPTAC3 6657cbe8-77b7-4d68-a44a-be781736d0a8 50ae117fc3ad64a517528d924a5287d3 { 'aliquot_tag': 'ANN_35d1d74b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02696.ANN_35d1d74b.RNA-Seq.transcriptome.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 919a79c7-d6c1-4fca-a00c-55b29a3eee7e.rna_seq.transcriptome.gdc_realn.bam 12644023039 BAM transcriptome harmonized CPTAC3 d6a0e908-a428-492e-a7c7-ef500c3aef1a abf66addce965ad5be3099a3ef2fe44e { 'aliquot_tag': 'ANN_35d1d74b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02696.ANN_35d1d74b.RNA-Seq.chimeric.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 eef54fd2-9943-44ba-ba48-feb3b138446a.rna_seq.chimeric.gdc_realn.bam 527897923 BAM chimeric harmonized CPTAC3 a9af1c2e-158b-4a48-96b1-9bf297c50706 efe76d5d0a8a8a78bca521d98761be4f { 'aliquot_tag': 'ANN_35d1d74b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02696.ANN_35d1d74b.RNA-Seq.genomic.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 eef54fd2-9943-44ba-ba48-feb3b138446a.rna_seq.genomic.gdc_realn.bam 12821998307 BAM genomic harmonized CPTAC3 ee143b84-6464-4788-b4fd-970f92bcba55 704e7f6e94de63b4d76ca1dfcf15144a { 'aliquot_tag': 'ANN_35d1d74b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02696.ANN_35d1d74b.RNA-Seq.R1_L005.T C3N-02696 PDA RNA-Seq tumor CPT0187720029 200807_UNC32-K00270_0255_AHHY2WBBXY_CATAGAGT-TGCCACCA_S2_L005_R1_001.fastq.gz 5395654595 FASTQ R1_L005 unaligned CPTAC3 d21f8288-6844-4693-9f81-781a52b7c925 19b83578d3544646e37a0408704a5974 { 'aliquot_tag': 'ANN_35d1d74b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3N-02696.ANN_35d1d74b.RNA-Seq.R2_L005.T C3N-02696 PDA RNA-Seq tumor CPT0187720029 200807_UNC32-K00270_0255_AHHY2WBBXY_CATAGAGT-TGCCACCA_S2_L005_R2_001.fastq.gz 6089753546 FASTQ R2_L005 unaligned CPTAC3 6657cbe8-77b7-4d68-a44a-be781736d0a8 50ae117fc3ad64a517528d924a5287d3 { 'aliquot_tag': 'ANN_35d1d74b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3N-02696.ANN_35d1d74b.RNA-Seq.transcriptome.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720029 eef54fd2-9943-44ba-ba48-feb3b138446a.rna_seq.transcriptome.gdc_realn.bam 14240909465 BAM transcriptome harmonized CPTAC3 1b3af2b8-1543-4065-8858-c292dd1118bb dd2047b7cb2fc326c7b584e5083c57f4 { 'aliquot_tag': 'ANN_35d1d74b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02696.DUP_2737e1d9.RNA-Seq.chimeric.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 3475f8e0-a97d-41f5-8144-a85e17630874.rna_seq.chimeric.gdc_realn.bam 533779278 BAM chimeric harmonized CPTAC3 50c0f55b-cf5f-4a84-9304-31a6537b5a15 376b31af19c7af8ae63cd88a13d7098c { 'aliquot_tag': 'DUP_2737e1d9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02696.DUP_2737e1d9.RNA-Seq.genomic.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 3475f8e0-a97d-41f5-8144-a85e17630874.rna_seq.genomic.gdc_realn.bam 8239230714 BAM genomic harmonized CPTAC3 bb3014e0-ada9-4ae0-82a3-185a6c1576be 2e724f165d7349561f8ae83f7e5d2fce { 'aliquot_tag': 'DUP_2737e1d9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02696.DUP_2737e1d9.RNA-Seq.R1_L005.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 220114_UNC32-K00270_0310_AHMWT5BBXY_CTCTCGTC-TATAACCT_S14_L005_R1_001.fastq.gz 3879434642 FASTQ R1_L005 unaligned CPTAC3 fbccd334-cb51-4a83-94cd-ccae217f563d 17bb63ef743a23902e9fbf6efc2a559e { 'aliquot_tag': 'DUP_2737e1d9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3N-02696.DUP_2737e1d9.RNA-Seq.R2_L005.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 220114_UNC32-K00270_0310_AHMWT5BBXY_CTCTCGTC-TATAACCT_S14_L005_R2_001.fastq.gz 4168570690 FASTQ R2_L005 unaligned CPTAC3 2c98d1d4-8184-436b-a163-4d7ceb2b71d2 6c9e378cf5eaccf7bca21ff9f989c190 { 'aliquot_tag': 'DUP_2737e1d9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3N-02696.DUP_2737e1d9.RNA-Seq.transcriptome.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 3475f8e0-a97d-41f5-8144-a85e17630874.rna_seq.transcriptome.gdc_realn.bam 9498415514 BAM transcriptome harmonized CPTAC3 642b28d8-e329-4f38-8bc9-3d7a49922d42 bcf8749ee8098b4068352b308b674f1f { 'aliquot_tag': 'DUP_2737e1d9', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02696.DUP_2ccae60a.RNA-Seq.chimeric.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720039 e70c141d-f705-462e-bd20-987c3cfbab7b.rna_seq.chimeric.gdc_realn.bam 297118867 BAM chimeric harmonized CPTAC3 1609d96f-62fb-4c35-9128-7f72df84bb4d 84ed9795df7f794cf630a9787c11b4a2 { 'aliquot_tag': 'DUP_2ccae60a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02696.DUP_2ccae60a.RNA-Seq.genomic.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720039 e70c141d-f705-462e-bd20-987c3cfbab7b.rna_seq.genomic.gdc_realn.bam 12426252115 BAM genomic harmonized CPTAC3 7518b12c-f457-4759-9f59-a6c2aa3a93bd c0be068ebd656d6f6a2814d7e04b65d3 { 'aliquot_tag': 'DUP_2ccae60a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02696.DUP_2ccae60a.RNA-Seq.R1_L003.T C3N-02696 PDA RNA-Seq tumor CPT0187720039 220126_UNC32-K00270_0314_AHMVJ7BBXY_AGCCTCAT-AGTAGAGA_S9_L003_R1_001.fastq.gz 5674534162 FASTQ R1_L003 unaligned CPTAC3 2d61c60e-e794-459f-84d1-ef96c6629ff3 5062fa2c0b53926c19bb6a19f9ed1a5f { 'aliquot_tag': 'DUP_2ccae60a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L003' } +C3N-02696.DUP_2ccae60a.RNA-Seq.R2_L003.T C3N-02696 PDA RNA-Seq tumor CPT0187720039 220126_UNC32-K00270_0314_AHMVJ7BBXY_AGCCTCAT-AGTAGAGA_S9_L003_R2_001.fastq.gz 6239096360 FASTQ R2_L003 unaligned CPTAC3 f592aca1-a466-4c6b-a2c9-91baf38ff58c 1930a05fa433f714f6ff7beafe4f8f5e { 'aliquot_tag': 'DUP_2ccae60a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L003' } +C3N-02696.DUP_2ccae60a.RNA-Seq.transcriptome.T.hg38 C3N-02696 PDA RNA-Seq tumor CPT0187720039 e70c141d-f705-462e-bd20-987c3cfbab7b.rna_seq.transcriptome.gdc_realn.bam 13294874592 BAM transcriptome harmonized CPTAC3 86b78d1c-656c-43d5-819c-979dc6fca912 e7de4d70ae9bbe293d7a9d16ef0d327c { 'aliquot_tag': 'DUP_2ccae60a', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02696.DUP_527b9ab7.WXS.T C3N-02696 PDA WXS tumor CPT0187720034 CPT0187720034.WholeExome.RP-1303.bam 26525491459 BAM aligned CPTAC3 0e1bf386-d80a-4099-9743-7e5c7416d54a 54c28f3934b6466b81885d01e2a4fc44 { 'aliquot_tag': 'DUP_527b9ab7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02696.DUP_527b9ab7.WXS.T.hg38 C3N-02696 PDA WXS tumor CPT0187720034 3fb95744-5c41-4471-9df3-546ee2b8e71e_wxs_gdc_realn.bam 36400384902 BAM harmonized CPTAC3 ea05ae7a-d363-4851-88ee-4711b46ddecf 0d86f5feac096bf4193d0178c3785307 { 'aliquot_tag': 'DUP_527b9ab7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02696.DUP_58d5e331.WXS.N C3N-02696 PDA WXS blood_normal CPT0187770002 CPT0187770002.WholeExome.RP-1303.bam 30426628672 BAM aligned CPTAC3 2100a057-46d9-405e-a8d1-28fd7e79074b d2e40c042d5fd9932975e453c7d52ab3 { 'aliquot_tag': 'DUP_58d5e331', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02696.DUP_58d5e331.WXS.N.hg38 C3N-02696 PDA WXS blood_normal CPT0187770002 cd44d8e9-d1db-43ee-854d-6482cc2cecc3_wxs_gdc_realn.bam 41477207661 BAM harmonized CPTAC3 7cfa912c-2445-4423-9113-4967da503f4e d72036774f71d8f7ec248faf4b4e76a4 { 'aliquot_tag': 'DUP_58d5e331', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02696.DUP_bb183f82.WXS.T C3N-02696 PDA WXS tumor CPT0187720032 CPT0187720032.WholeExome.RP-1303.bam 26275991837 BAM aligned CPTAC3 b85cc756-a350-4145-8661-76900a626368 9fe25406f53d5d398a47049ca975b627 { 'aliquot_tag': 'DUP_bb183f82', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02696.DUP_bb183f82.WXS.T.hg38 C3N-02696 PDA WXS tumor CPT0187720032 5c1e57f9-b763-4096-8efe-ad4938f28f28_wxs_gdc_realn.bam 37859899802 BAM harmonized CPTAC3 e19f85e5-6493-4350-8805-594adbee928c c5b98435f5b460b82c2afbc19bb2862a { 'aliquot_tag': 'DUP_bb183f82', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-02696.DUP_be3eb063.RNA-Seq.chimeric.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 2df2d281-1011-4fe7-9db4-65362796b208.rna_seq.chimeric.gdc_realn.bam 153590444 BAM chimeric harmonized CPTAC3 63956fcc-723b-45d1-9fac-d45b52ddf737 b08e6956acf263a9ed56f89912e60845 { 'aliquot_tag': 'DUP_be3eb063', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02696.DUP_be3eb063.RNA-Seq.genomic.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 2df2d281-1011-4fe7-9db4-65362796b208.rna_seq.genomic.gdc_realn.bam 6564071542 BAM genomic harmonized CPTAC3 0e70657d-b298-4401-a950-81125c39f6b9 bd607053f1211d18b6e2afee833aa4fd { 'aliquot_tag': 'DUP_be3eb063', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02696.DUP_be3eb063.RNA-Seq.R1_L003.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 220126_UNC32-K00270_0314_AHMVJ7BBXY_GATTCTGC-GACGAGAG_S11_L003_R1_001.fastq.gz 3150886063 FASTQ R1_L003 unaligned CPTAC3 179e310a-ac0b-4117-acc3-2348212cf312 91a4ba94ffe1d7f4a363651ef33bd2db { 'aliquot_tag': 'DUP_be3eb063', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L003' } +C3N-02696.DUP_be3eb063.RNA-Seq.R2_L003.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 220126_UNC32-K00270_0314_AHMVJ7BBXY_GATTCTGC-GACGAGAG_S11_L003_R2_001.fastq.gz 3377145906 FASTQ R2_L003 unaligned CPTAC3 edb35be5-33e0-45ba-b587-b4a5b62b96d4 984fcf990bb017f4e2a87fac9603934c { 'aliquot_tag': 'DUP_be3eb063', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L003' } +C3N-02696.DUP_be3eb063.RNA-Seq.transcriptome.A.hg38 C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 2df2d281-1011-4fe7-9db4-65362796b208.rna_seq.transcriptome.gdc_realn.bam 9617546428 BAM transcriptome harmonized CPTAC3 f25f34aa-e85f-44c9-be6f-94327e62db90 4af403651a18a72191c6b96c1096b34b { 'aliquot_tag': 'DUP_be3eb063', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02696.DUP_cc1f0f14.WXS.T C3N-02696 PDA WXS tumor CPT0187720033 CPT0187720033.WholeExome.RP-1303.bam 24274340836 BAM aligned CPTAC3 7bf03c0c-2177-448a-a58c-9d0f8fe5ab32 0a8e39c5ffd4092f7fe840453089c76f { 'aliquot_tag': 'DUP_cc1f0f14', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02696.DUP_cc1f0f14.WXS.T.hg38 C3N-02696 PDA WXS tumor CPT0187720033 4550480f-f067-49e8-b363-a6ef86e7f3a0_wxs_gdc_realn.bam 33713968747 BAM harmonized CPTAC3 efcfaeab-730f-4a73-abc6-997b95dceaed 1bc70a8881e4ee9ed76ac1b395560bec { 'aliquot_tag': 'DUP_cc1f0f14', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3N-02696.RNA-Seq.R1_L003.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 220126_UNC32-K00270_0314_AHMVJ7BBXY_GATTCTGC-GACGAGAG_S11_L003_R1_001.fastq.gz 3150886063 FASTQ R1_L003 unaligned CPTAC3 179e310a-ac0b-4117-acc3-2348212cf312 91a4ba94ffe1d7f4a363651ef33bd2db { 'aliquot_tag': 'ALQ_be3eb063', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02696.RNA-Seq.R1_L003.T C3N-02696 PDA RNA-Seq tumor CPT0187720039 220126_UNC32-K00270_0314_AHMVJ7BBXY_AGCCTCAT-AGTAGAGA_S9_L003_R1_001.fastq.gz 5674534162 FASTQ R1_L003 unaligned CPTAC3 2d61c60e-e794-459f-84d1-ef96c6629ff3 5062fa2c0b53926c19bb6a19f9ed1a5f { 'aliquot_tag': 'ALQ_2ccae60a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02696.RNA-Seq.R1_L005.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 220114_UNC32-K00270_0310_AHMWT5BBXY_CTCTCGTC-TATAACCT_S14_L005_R1_001.fastq.gz 3879434642 FASTQ R1_L005 unaligned CPTAC3 fbccd334-cb51-4a83-94cd-ccae217f563d 17bb63ef743a23902e9fbf6efc2a559e { 'aliquot_tag': 'ALQ_2737e1d9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02696.RNA-Seq.R2_L003.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730043 220126_UNC32-K00270_0314_AHMVJ7BBXY_GATTCTGC-GACGAGAG_S11_L003_R2_001.fastq.gz 3377145906 FASTQ R2_L003 unaligned CPTAC3 edb35be5-33e0-45ba-b587-b4a5b62b96d4 984fcf990bb017f4e2a87fac9603934c { 'aliquot_tag': 'ALQ_be3eb063', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02696.RNA-Seq.R2_L003.T C3N-02696 PDA RNA-Seq tumor CPT0187720039 220126_UNC32-K00270_0314_AHMVJ7BBXY_AGCCTCAT-AGTAGAGA_S9_L003_R2_001.fastq.gz 6239096360 FASTQ R2_L003 unaligned CPTAC3 f592aca1-a466-4c6b-a2c9-91baf38ff58c 1930a05fa433f714f6ff7beafe4f8f5e { 'aliquot_tag': 'ALQ_2ccae60a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02696.RNA-Seq.R2_L005.A C3N-02696 PDA RNA-Seq tissue_normal CPT0187730040 220114_UNC32-K00270_0310_AHMWT5BBXY_CTCTCGTC-TATAACCT_S14_L005_R2_001.fastq.gz 4168570690 FASTQ R2_L005 unaligned CPTAC3 2c98d1d4-8184-436b-a163-4d7ceb2b71d2 6c9e378cf5eaccf7bca21ff9f989c190 { 'aliquot_tag': 'ALQ_2737e1d9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02697.MethArray.Green.T C3N-02697 PDA Methylation Array tumor CPT0187780007 203561620153_R02C01_Grn.idat 13676211 IDAT Green NA CPTAC3 4814ffc2-1abf-44ca-96a1-10fcb0852a1a 6be61a0ee3cfbd0c2805600bfa5d2ff3 { 'aliquot_tag': 'ALQ_aaef806f', 'gdc_sample_type': 'Primary Tumor' } C3N-02697.MethArray.Red.T C3N-02697 PDA Methylation Array tumor CPT0187780007 203561620153_R02C01_Red.idat 13676211 IDAT Red NA CPTAC3 12bfe7b1-a658-47c6-98f3-625f27ad343d cfdea2962c4bce127a72aa5f76aaa566 { 'aliquot_tag': 'ALQ_aaef806f', 'gdc_sample_type': 'Primary Tumor' } C3N-02697.miRNA-Seq.T C3N-02697 PDA miRNA-Seq tumor CPT0187780010 190712_UNC32-K00270_0192_BH7HL3BBXY_ATGAGC_S2_L004_R1_001.unaln.bam 155578609 BAM unaligned CPTAC3 e70a32ad-5c49-4800-8705-82ed3489cc87 5192a8a730599bcce381c97ea0098e31 { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor' } C3N-02697.miRNA-Seq.T.hg38 C3N-02697 PDA miRNA-Seq tumor CPT0187780010 92678b1a-17a6-4e15-88ea-f2ebd3f1a705_mirnaseq_gdc_realn.bam 175218702 BAM harmonized CPTAC3 dd991044-a44e-42d3-b3e1-b7f7aa9acf05 0bd9538a464325ca8f78004d12cf75db { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02697.RNA-Seq.chimeric.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 c824d73e-8c29-435c-a547-ae8cd35b853b.rna_seq.chimeric.gdc_realn.bam 38143690 BAM chimeric harmonized CPTAC3 b1de50b7-2636-4be2-9bfe-c915dd6abd61 ad95104fde5d08955f1320b1869478d1 { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02697.RNA-Seq.genomic.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 c824d73e-8c29-435c-a547-ae8cd35b853b.rna_seq.genomic.gdc_realn.bam 9108640644 BAM genomic harmonized CPTAC3 f72aaf6f-5bc5-4863-b29e-b6b0f26ae2c8 36d217751e5f68ec1f81641e180d0826 { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02697.RNA-Seq.R1_L003.T C3N-02697 PDA RNA-Seq tumor CPT0187780010 190621_UNC32-K00270_0185_BH7G72BBXY_TGGCCGGT-TAGAGCGC_S10_L003_R1_001.fastq.gz 4039843803 FASTQ R1_L003 unaligned CPTAC3 3af97fc0-6065-4f6a-8721-134c0800f159 e48b2857aa202cb163ab51361041beeb { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02697.RNA-Seq.R2_L003.T C3N-02697 PDA RNA-Seq tumor CPT0187780010 190621_UNC32-K00270_0185_BH7G72BBXY_TGGCCGGT-TAGAGCGC_S10_L003_R2_001.fastq.gz 4601498429 FASTQ R2_L003 unaligned CPTAC3 d2001364-38f0-4745-963b-acefe25a8f22 aa0f91d91eb1cb11008020199581d39b { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02697.RNA-Seq.transcriptome.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 c824d73e-8c29-435c-a547-ae8cd35b853b.rna_seq.transcriptome.gdc_realn.bam 9937064018 BAM transcriptome harmonized CPTAC3 b4ddbe08-9aa4-4d7a-8073-26692ce54c3b c005e75ea1709739b49dd674a9b2ac43 { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02697.RNA-Seq.chimeric.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 6770569b-6644-4a8e-92b7-ab47bb87f478.rna_seq.chimeric.gdc_realn.bam 38129331 BAM chimeric harmonized CPTAC3 c95cde69-587e-4067-a307-0dbe044d4791 77b89f7cc0a330d383ac9ae85c014a26 { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02697.RNA-Seq.genomic.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 6770569b-6644-4a8e-92b7-ab47bb87f478.rna_seq.genomic.gdc_realn.bam 9109969658 BAM genomic harmonized CPTAC3 432d2d4c-c62e-466d-87f4-e5b5ed65c173 4cb7409e1659eee6364d9c944128bc31 { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02697.RNA-Seq.R1_L003.T C3N-02697 PDA RNA-Seq tumor CPT0187780010 190621_UNC32-K00270_0185_BH7G72BBXY_TGGCCGGT-TAGAGCGC_S10_L003_R1_001.fastq.gz 4039843803 FASTQ R1_L003 unaligned CPTAC3 3af97fc0-6065-4f6a-8721-134c0800f159 e48b2857aa202cb163ab51361041beeb { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02697.RNA-Seq.R2_L003.T C3N-02697 PDA RNA-Seq tumor CPT0187780010 190621_UNC32-K00270_0185_BH7G72BBXY_TGGCCGGT-TAGAGCGC_S10_L003_R2_001.fastq.gz 4601498429 FASTQ R2_L003 unaligned CPTAC3 d2001364-38f0-4745-963b-acefe25a8f22 aa0f91d91eb1cb11008020199581d39b { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02697.RNA-Seq.transcriptome.T.hg38 C3N-02697 PDA RNA-Seq tumor CPT0187780010 6770569b-6644-4a8e-92b7-ab47bb87f478.rna_seq.transcriptome.gdc_realn.bam 11255074817 BAM transcriptome harmonized CPTAC3 ecebd7af-834e-43be-9645-b05e397c0fa2 b9eae79ba195d0fe7b6463538f418b69 { 'aliquot_tag': 'ALQ_2d90248d', 'gdc_sample_type': 'Primary Tumor' } C3N-02697.WGS.N C3N-02697 PDA WGS blood_normal CPT0187800002 CPT0187800002.WholeGenome.RP-1303.bam 71530873228 BAM aligned CPTAC3 160c6ba2-2afb-4c8a-a870-8a4ff5ce72ad e67abb62145a1431ffc4e3ed55efee56 { 'aliquot_tag': 'ALQ_1ba38df4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02697.WGS.N.hg38 C3N-02697 PDA WGS blood_normal CPT0187800002 f93936bb-8321-4662-84e8-04ca6bae8841_wgs_gdc_realn.bam 105102884811 BAM harmonized CPTAC3 6a1a0705-71cf-471f-a698-25110c1e7665 960523cec50fa7c8f2eed9f6c40b3f40 { 'aliquot_tag': 'ALQ_1ba38df4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02697.WGS.T C3N-02697 PDA WGS tumor CPT0187780007 CPT0187780007.WholeGenome.RP-1303.bam 135293604911 BAM aligned CPTAC3 a8afd049-ab10-483d-b862-b96e68f048f8 682d0cc9dc86200f78999c062f9f21bb { 'aliquot_tag': 'ALQ_aaef806f', 'gdc_sample_type': 'Primary Tumor' } @@ -32332,12 +34525,15 @@ C3N-02700.MethArray.Red.T C3N-02700 HNSCC Methylation Array tumor CPT0177010006 C3N-02700.miRNA-Seq.T C3N-02700 HNSCC miRNA-Seq tumor CPT0177010009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGATC_S7_L001_R1_001.unaln.bam 243249333 BAM unaligned CPTAC3 9bea4471-5f0c-4ef5-b9a6-901d9b978cd2 918fd72ba5077e38e970a5fe983757bf { 'aliquot_tag': 'ALQ_8462ed0d', 'gdc_sample_type': 'Primary Tumor' } C3N-02700.miRNA-Seq.T.hg38 C3N-02700 HNSCC miRNA-Seq tumor CPT0177010009 b2f73d1f-bebd-472f-86b7-fd8d26a6c74a_mirnaseq_gdc_realn.bam 267872063 BAM harmonized CPTAC3 07ec6e4e-5fc3-46e8-9f68-dd8dd9142a53 f0864f084110fa98810830e3fef03499 { 'aliquot_tag': 'ALQ_8462ed0d', 'gdc_sample_type': 'Primary Tumor' } C3N-02700.RNA-Seq.chimeric.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 05ac3e7c-1b87-4391-83c9-d0e0a95f1a56.rna_seq.chimeric.gdc_realn.bam 333065920 BAM chimeric harmonized CPTAC3 9ec88ca7-b26b-49f5-b7da-ce65e8f53606 a324d5f5a47901ebcf5e6d62a1963cf6 { 'aliquot_tag': 'ALQ_8462ed0d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02700.RNA-Seq.genomic.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 05ac3e7c-1b87-4391-83c9-d0e0a95f1a56.rna_seq.genomic.gdc_realn.bam 8844652422 BAM genomic harmonized CPTAC3 802bedbf-520e-40f2-8371-28e8727be96b 0a6765f0f09a6af6f39c4cab08a2b187 { 'aliquot_tag': 'ALQ_8462ed0d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02700.RNA-Seq.R1_L002.T C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4062433781 FASTQ R1_L002 unaligned CPTAC3 319a077c-3031-4fbe-9958-4577b5919304 8c61dfa9b7b9b335fa27707024bc632c { 'aliquot_tag': 'ALQ_8462ed0d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02700.RNA-Seq.R1_.T C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 20210714_P1_B4_WB7988_plate1_S16_R1_001.fastq.gz 2637938442 FASTQ R1_ unaligned CPTAC3 bffb41d6-19e2-43c6-a0aa-885b8e15bcb5 948bc6b1d7cff07590f8a0d45c53cba3 { 'aliquot_tag': 'ALQ_6622f2be', 'gdc_sample_type': 'Primary Tumor' } -C3N-02700.RNA-Seq.R2_L002.T C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4516828840 FASTQ R2_L002 unaligned CPTAC3 01f59131-90c2-4ae2-bbb2-e18463f8577c 4f4eaaf4872e6071607927d8f4c2b36e { 'aliquot_tag': 'ALQ_8462ed0d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02700.RNA-Seq.R2_.T C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 20210714_P1_B4_WB7988_plate1_S16_R2_001.fastq.gz 2943138635 FASTQ R2_ unaligned CPTAC3 fb953b37-fc0e-49ca-8a6a-07a3b0ef8905 3548b33cebce9c98657319af78b239b3 { 'aliquot_tag': 'ALQ_6622f2be', 'gdc_sample_type': 'Primary Tumor' } +C3N-02700.RNA-Seq.chimeric.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 0290399e-1ee7-4b96-a482-5db47d84b606.rna_seq.chimeric.gdc_realn.bam 2087327 BAM chimeric harmonized CPTAC3 1ec1e2e3-33a3-4aed-99a9-2f0f3c267f38 bfdb0855dcd55e458f30d9bf18b1f6ac { 'aliquot_tag': 'ALQ_6622f2be', 'gdc_sample_type': 'Primary Tumor' } +C3N-02700.RNA-Seq.genomic.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 05ac3e7c-1b87-4391-83c9-d0e0a95f1a56.rna_seq.genomic.gdc_realn.bam 8844652422 BAM genomic harmonized CPTAC3 630a9898-48d9-432b-b8c7-e231ebef5960 0a6765f0f09a6af6f39c4cab08a2b187 { 'aliquot_tag': 'ALQ_8462ed0d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02700.RNA-Seq.genomic.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 0290399e-1ee7-4b96-a482-5db47d84b606.rna_seq.genomic.gdc_realn.bam 5824664527 BAM genomic harmonized CPTAC3 ce425d5c-ab86-4a42-bf5e-09c12d9478ab 7222eeeaab883a6624605ce07fba1278 { 'aliquot_tag': 'ALQ_6622f2be', 'gdc_sample_type': 'Primary Tumor' } +C3N-02700.RNA-Seq.R1_L002.T C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L002_R1_001.fastq.gz 4062433781 FASTQ R1_L002 unaligned CPTAC3 319a077c-3031-4fbe-9958-4577b5919304 8c61dfa9b7b9b335fa27707024bc632c { 'aliquot_tag': 'ALQ_8462ed0d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02700.RNA-Seq.R2_L002.T C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 190215_UNC32-K00270_0147_AH3VGHBBXY_CAGATC_S8_L002_R2_001.fastq.gz 4516828840 FASTQ R2_L002 unaligned CPTAC3 01f59131-90c2-4ae2-bbb2-e18463f8577c 4f4eaaf4872e6071607927d8f4c2b36e { 'aliquot_tag': 'ALQ_8462ed0d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02700.RNA-Seq.T C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 20210714_P1_B4_WB7988_plate1_S16_R1_001.fastq.gz 2637938442 FASTQ unaligned CPTAC3 bffb41d6-19e2-43c6-a0aa-885b8e15bcb5 948bc6b1d7cff07590f8a0d45c53cba3 +C3N-02700.RNA-Seq.T C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 20210714_P1_B4_WB7988_plate1_S16_R2_001.fastq.gz 2943138635 FASTQ unaligned CPTAC3 fb953b37-fc0e-49ca-8a6a-07a3b0ef8905 3548b33cebce9c98657319af78b239b3 C3N-02700.RNA-Seq.transcriptome.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177010009 05ac3e7c-1b87-4391-83c9-d0e0a95f1a56.rna_seq.transcriptome.gdc_realn.bam 10867273856 BAM transcriptome harmonized CPTAC3 45d525d8-4cb6-448c-b28d-8c4f94fc145e ff3e2c1b7422cf019545823b806d1512 { 'aliquot_tag': 'ALQ_8462ed0d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02700.RNA-Seq.transcriptome.T.hg38 C3N-02700 HNSCC RNA-Seq tumor CPT0177050011 0290399e-1ee7-4b96-a482-5db47d84b606.rna_seq.transcriptome.gdc_realn.bam 5317413113 BAM transcriptome harmonized CPTAC3 c47e3231-da5f-4bab-9853-f123d68a236e c0ec2f3239574dc7ac8455b4faa00387 { 'aliquot_tag': 'ALQ_6622f2be', 'gdc_sample_type': 'Primary Tumor' } C3N-02700.WGS.N C3N-02700 HNSCC WGS blood_normal CPT0177130002 CPT0177130002.WholeGenome.RP-1303.bam 65959456085 BAM aligned CPTAC3 7b064650-af3e-42da-b0df-734ccc4990c3 dbc6eb0a1e9498059dda415f933c8d9f { 'aliquot_tag': 'ALQ_a22cb440', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02700.WGS.N.hg38 C3N-02700 HNSCC WGS blood_normal CPT0177130002 c7ba6d5b-3412-4e38-aedc-4a55db1c2449_wgs_gdc_realn.bam 96217644096 BAM harmonized CPTAC3 aeaf78a2-50fd-4520-adac-0f17264cfd93 08027a10e2678394aa3777cdb1320728 { 'aliquot_tag': 'ALQ_a22cb440', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02700.WGS.T C3N-02700 HNSCC WGS tumor CPT0177010006 CPT0177010006.WholeGenome.RP-1303.bam 89825070533 BAM aligned CPTAC3 d62952b7-0b11-4361-a619-9711ee873d3a 616824dd0333afa4bd2ae8f4a361afa8 { 'aliquot_tag': 'ALQ_14ddf09c', 'gdc_sample_type': 'Primary Tumor' } @@ -32356,16 +34552,19 @@ C3N-02713.miRNA-Seq.T C3N-02713 HNSCC miRNA-Seq tumor CPT0190850009 190228_UNC32 C3N-02713.miRNA-Seq.T.hg38 C3N-02713 HNSCC miRNA-Seq tumor CPT0190850009 9fd7d10d-cd94-425a-acda-45ed003a252d_mirnaseq_gdc_realn.bam 262240674 BAM harmonized CPTAC3 ffb61a67-c9a6-43f3-b585-1d4347f30753 7fdb71340962de3d07ed5707c7e1bd16 { 'aliquot_tag': 'ALQ_4d9ce51c', 'gdc_sample_type': 'Primary Tumor' } C3N-02713.RNA-Seq.chimeric.A.hg38 C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 6479d38a-bbdf-4812-b18e-87aa8fe637fe.rna_seq.chimeric.gdc_realn.bam 172294954 BAM chimeric harmonized CPTAC3 72c2d1c4-ec92-4f53-b209-921bddaf7299 0e9f126cfbbba0fce72733dc7956aaf2 { 'aliquot_tag': 'ALQ_9a83825d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02713.RNA-Seq.chimeric.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 7cb7f0b8-d36d-42d5-bf4a-f88aa7fc2bf6.rna_seq.chimeric.gdc_realn.bam 372130879 BAM chimeric harmonized CPTAC3 0b62eb52-5caf-4a0b-b1ca-5792e35d0472 6b89fc9960b12f1648b11d9fe97e5e98 { 'aliquot_tag': 'ALQ_4d9ce51c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02713.RNA-Seq.genomic.A.hg38 C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 6479d38a-bbdf-4812-b18e-87aa8fe637fe.rna_seq.genomic.gdc_realn.bam 8126084783 BAM genomic harmonized CPTAC3 f46c1413-0fe0-49f0-839d-f10aec8b9b40 56715d64a4cc045222458ca66b012e83 { 'aliquot_tag': 'ALQ_9a83825d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02713.RNA-Seq.genomic.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 7cb7f0b8-d36d-42d5-bf4a-f88aa7fc2bf6.rna_seq.genomic.gdc_realn.bam 9069013422 BAM genomic harmonized CPTAC3 08cadee5-fd94-4977-a305-a7fc81eab03c 0b51f9f10a63ec7219a66ad58079694d { 'aliquot_tag': 'ALQ_4d9ce51c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02713.RNA-Seq.R1_L001.T C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 190405_UNC32-K00270_0161_BH55FNBBXY_CAGATC_S3_L001_R1_001.fastq.gz 4245817048 FASTQ R1_L001 unaligned CPTAC3 338d0330-d99c-4bf4-a11e-1db9aa097111 623014745213ed5700415104862b5ac4 { 'aliquot_tag': 'ALQ_4d9ce51c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02713.RNA-Seq.R1_L007.A C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L007_R1_001.fastq.gz 3823210591 FASTQ R1_L007 unaligned CPTAC3 40aa5ffd-45cb-4efc-b9d7-53dd5268d2fa 0bf7a71b7be5e68a500fb25aff3dde3d { 'aliquot_tag': 'ALQ_9a83825d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02713.RNA-Seq.R1_.T C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 20210723_P2_F1_WB7988-plate2_S61_R1_001.fastq.gz 5969543465 FASTQ R1_ unaligned CPTAC3 65bf5c81-1fdf-4e3f-8af1-c5a8b89eba91 f6ba27babb015c4d738ffa1f9a4615ed { 'aliquot_tag': 'ALQ_9facb16e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02713.RNA-Seq.R2_L001.T C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 190405_UNC32-K00270_0161_BH55FNBBXY_CAGATC_S3_L001_R2_001.fastq.gz 4803689580 FASTQ R2_L001 unaligned CPTAC3 d5711786-9237-41be-a275-40a299c3467b 7117c05b39ae41a848c318c9e5d525c4 { 'aliquot_tag': 'ALQ_4d9ce51c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02713.RNA-Seq.R2_L007.A C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L007_R2_001.fastq.gz 3929758484 FASTQ R2_L007 unaligned CPTAC3 b4c28fc1-5a8c-4507-854a-a958fb9c7271 464f0d8179aaf058591d53f71162a007 { 'aliquot_tag': 'ALQ_9a83825d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02713.RNA-Seq.R2_.T C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 20210723_P2_F1_WB7988-plate2_S61_R2_001.fastq.gz 6201097139 FASTQ R2_ unaligned CPTAC3 be7f1837-2a57-43e4-9754-b5bfacf23866 194a900587d9baddac812bc5205d9f43 { 'aliquot_tag': 'ALQ_9facb16e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02713.RNA-Seq.chimeric.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 2153967f-65c4-4760-9b9d-892b937a7b4e.rna_seq.chimeric.gdc_realn.bam 240598868 BAM chimeric harmonized CPTAC3 9873ca29-1c4c-4c33-891e-2a4d952e882d 4048d3c07a9376b93a8a3696ff281fe3 { 'aliquot_tag': 'ALQ_9facb16e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02713.RNA-Seq.genomic.A.hg38 C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 6479d38a-bbdf-4812-b18e-87aa8fe637fe.rna_seq.genomic.gdc_realn.bam 8126084783 BAM genomic harmonized CPTAC3 91ea79b4-5107-4c7f-9b54-fe7c01d7cecb 56715d64a4cc045222458ca66b012e83 { 'aliquot_tag': 'ALQ_9a83825d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02713.RNA-Seq.genomic.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 7cb7f0b8-d36d-42d5-bf4a-f88aa7fc2bf6.rna_seq.genomic.gdc_realn.bam 9069013422 BAM genomic harmonized CPTAC3 3e7b9a2f-f358-46e4-81d6-57c427b64fdc 0b51f9f10a63ec7219a66ad58079694d { 'aliquot_tag': 'ALQ_4d9ce51c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02713.RNA-Seq.genomic.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 2153967f-65c4-4760-9b9d-892b937a7b4e.rna_seq.genomic.gdc_realn.bam 10183591924 BAM genomic harmonized CPTAC3 49286e4b-6945-4042-ab08-ab8e69bca26f 4c7d6471ddf900978410b142276c407f { 'aliquot_tag': 'ALQ_9facb16e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02713.RNA-Seq.R1_L001.T C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 190405_UNC32-K00270_0161_BH55FNBBXY_CAGATC_S3_L001_R1_001.fastq.gz 4245817048 FASTQ R1_L001 unaligned CPTAC3 338d0330-d99c-4bf4-a11e-1db9aa097111 623014745213ed5700415104862b5ac4 { 'aliquot_tag': 'ALQ_4d9ce51c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02713.RNA-Seq.R1_L007.A C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L007_R1_001.fastq.gz 3823210591 FASTQ R1_L007 unaligned CPTAC3 40aa5ffd-45cb-4efc-b9d7-53dd5268d2fa 0bf7a71b7be5e68a500fb25aff3dde3d { 'aliquot_tag': 'ALQ_9a83825d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02713.RNA-Seq.R2_L001.T C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 190405_UNC32-K00270_0161_BH55FNBBXY_CAGATC_S3_L001_R2_001.fastq.gz 4803689580 FASTQ R2_L001 unaligned CPTAC3 d5711786-9237-41be-a275-40a299c3467b 7117c05b39ae41a848c318c9e5d525c4 { 'aliquot_tag': 'ALQ_4d9ce51c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02713.RNA-Seq.R2_L007.A C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGAAA_S4_L007_R2_001.fastq.gz 3929758484 FASTQ R2_L007 unaligned CPTAC3 b4c28fc1-5a8c-4507-854a-a958fb9c7271 464f0d8179aaf058591d53f71162a007 { 'aliquot_tag': 'ALQ_9a83825d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02713.RNA-Seq.T C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 20210723_P2_F1_WB7988-plate2_S61_R1_001.fastq.gz 5969543465 FASTQ unaligned CPTAC3 65bf5c81-1fdf-4e3f-8af1-c5a8b89eba91 f6ba27babb015c4d738ffa1f9a4615ed +C3N-02713.RNA-Seq.T C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 20210723_P2_F1_WB7988-plate2_S61_R2_001.fastq.gz 6201097139 FASTQ unaligned CPTAC3 be7f1837-2a57-43e4-9754-b5bfacf23866 194a900587d9baddac812bc5205d9f43 C3N-02713.RNA-Seq.transcriptome.A.hg38 C3N-02713 HNSCC RNA-Seq tissue_normal CPT0190860006 6479d38a-bbdf-4812-b18e-87aa8fe637fe.rna_seq.transcriptome.gdc_realn.bam 10508551470 BAM transcriptome harmonized CPTAC3 abf52725-40f5-4604-8286-938b5c85b8c4 61aa23a1005874d1c3f5ddf8e87ad7c6 { 'aliquot_tag': 'ALQ_9a83825d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02713.RNA-Seq.transcriptome.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190850009 7cb7f0b8-d36d-42d5-bf4a-f88aa7fc2bf6.rna_seq.transcriptome.gdc_realn.bam 9693312591 BAM transcriptome harmonized CPTAC3 748738b3-a89a-4f56-a846-fe783754d53c 565a48aa414aae5f22986dd8b2ffc929 { 'aliquot_tag': 'ALQ_4d9ce51c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02713.RNA-Seq.transcriptome.T.hg38 C3N-02713 HNSCC RNA-Seq tumor CPT0190890011 2153967f-65c4-4760-9b9d-892b937a7b4e.rna_seq.transcriptome.gdc_realn.bam 4588693820 BAM transcriptome harmonized CPTAC3 ab75b7ab-4509-4b7e-9e17-7e30a6edbdb5 6f272a99921280a6419160dc9ee80414 { 'aliquot_tag': 'ALQ_9facb16e', 'gdc_sample_type': 'Primary Tumor' } C3N-02713.WGS.N C3N-02713 HNSCC WGS blood_normal CPT0190950002 CPT0190950002.WholeGenome.RP-1303.bam 56872296263 BAM aligned CPTAC3 0f7fc2c9-e574-4f99-b220-9b8ff5d3e84e e8af9c7a89379e5d98b92dec61e017cd { 'aliquot_tag': 'ALQ_1112ef31', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02713.WGS.N.hg38 C3N-02713 HNSCC WGS blood_normal CPT0190950002 5561cc3f-6eba-4606-b11d-cf50a92930ca_wgs_gdc_realn.bam 81139399667 BAM harmonized CPTAC3 a1e33b48-f7a4-4841-bf1f-33499361accb 8cfe943600947c3e989450c7d004468e { 'aliquot_tag': 'ALQ_1112ef31', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02713.WGS.T C3N-02713 HNSCC WGS tumor CPT0190850006 CPT0190850006.WholeGenome.RP-1303.bam 62672059516 BAM aligned CPTAC3 1f48d9a4-33f0-420c-baf8-553c9b134d9b f676c9864342ab8efe3e10d0f8ff046c { 'aliquot_tag': 'ALQ_dd23f88d', 'gdc_sample_type': 'Primary Tumor' } @@ -32386,12 +34585,12 @@ C3N-02714.miRNA-Seq.T C3N-02714 HNSCC miRNA-Seq tumor CPT0177200009 190228_UNC32 C3N-02714.miRNA-Seq.T.hg38 C3N-02714 HNSCC miRNA-Seq tumor CPT0177200009 4744e2d1-a1a0-4b50-8170-371a726eb6be_mirnaseq_gdc_realn.bam 268207775 BAM harmonized CPTAC3 e297eaed-0118-40fc-b8b8-cef3bffa0ac3 fbf8bc4a5116dccb03795e18f1108a11 { 'aliquot_tag': 'ALQ_f4ca65b6', 'gdc_sample_type': 'Primary Tumor' } C3N-02714.RNA-Seq.chimeric.A.hg38 C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 66fedd31-256b-451d-8e75-74ec8260fbf9.rna_seq.chimeric.gdc_realn.bam 152572423 BAM chimeric harmonized CPTAC3 e2891fdc-591f-4d87-bab1-e6c9e12e1869 4225f48736435a331b6e5d42f773f3fb { 'aliquot_tag': 'ALQ_8e0a36d6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02714.RNA-Seq.chimeric.T.hg38 C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 d14851b9-a42e-474c-b085-347fa776cb63.rna_seq.chimeric.gdc_realn.bam 105129677 BAM chimeric harmonized CPTAC3 1fa16e5b-6f37-4a60-990a-48f83267d3ae e8b82cb18e76a5849737f946770cdc0d { 'aliquot_tag': 'ALQ_f4ca65b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02714.RNA-Seq.genomic.A.hg38 C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 66fedd31-256b-451d-8e75-74ec8260fbf9.rna_seq.genomic.gdc_realn.bam 8998242915 BAM genomic harmonized CPTAC3 c196265c-9193-4030-a7b1-eddcb1ef41b5 c729afc269715219822f12b8b319d99d { 'aliquot_tag': 'ALQ_8e0a36d6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02714.RNA-Seq.genomic.T.hg38 C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 d14851b9-a42e-474c-b085-347fa776cb63.rna_seq.genomic.gdc_realn.bam 9264380541 BAM genomic harmonized CPTAC3 3afeeabf-6b54-4f3e-ae87-cdda05e2c1cc be129d490d8bf4d665afcadb93cf9a41 { 'aliquot_tag': 'ALQ_f4ca65b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02714.RNA-Seq.R1_L002.T C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 4390081023 FASTQ R1_L002 unaligned CPTAC3 da47ac64-8561-4c91-a9df-284f46f3f992 00de404faef01427e97c31d5a0f29dba { 'aliquot_tag': 'ALQ_f4ca65b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02714.RNA-Seq.R1_L004.A C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L004_R1_001.fastq.gz 4174878368 FASTQ R1_L004 unaligned CPTAC3 e2a0a4ab-0008-45fa-b6eb-f972d5441ce3 095704cdd4d7c7b86cdfc19756012384 { 'aliquot_tag': 'ALQ_8e0a36d6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02714.RNA-Seq.R2_L002.T C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 4792391092 FASTQ R2_L002 unaligned CPTAC3 f0c394e3-0e19-4403-9368-66c2ab88ef5a f940118a1dbd40c4cdca27d9100609e9 { 'aliquot_tag': 'ALQ_f4ca65b6', 'gdc_sample_type': 'Primary Tumor' } -C3N-02714.RNA-Seq.R2_L004.A C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L004_R2_001.fastq.gz 4652175260 FASTQ R2_L004 unaligned CPTAC3 e9c4d1af-a0be-42ab-8900-64ff9b5e96f1 145047b686aa568c95ee0a08dbaf573f { 'aliquot_tag': 'ALQ_8e0a36d6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02714.RNA-Seq.genomic.A.hg38 C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 66fedd31-256b-451d-8e75-74ec8260fbf9.rna_seq.genomic.gdc_realn.bam 8998242915 BAM genomic harmonized CPTAC3 ef7c7a78-82f1-43b4-aa75-9ba44381e3d0 c729afc269715219822f12b8b319d99d { 'aliquot_tag': 'ALQ_8e0a36d6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02714.RNA-Seq.genomic.T.hg38 C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 d14851b9-a42e-474c-b085-347fa776cb63.rna_seq.genomic.gdc_realn.bam 9264380541 BAM genomic harmonized CPTAC3 246adef1-d506-49ee-a894-f8db00eb3ca3 be129d490d8bf4d665afcadb93cf9a41 { 'aliquot_tag': 'ALQ_f4ca65b6', 'gdc_sample_type': 'Primary Tumor' } +C3N-02714.RNA-Seq.R1_L002.T C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L002_R1_001.fastq.gz 4390081023 FASTQ R1_L002 unaligned CPTAC3 da47ac64-8561-4c91-a9df-284f46f3f992 00de404faef01427e97c31d5a0f29dba { 'aliquot_tag': 'ALQ_f4ca65b6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02714.RNA-Seq.R1_L004.A C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L004_R1_001.fastq.gz 4174878368 FASTQ R1_L004 unaligned CPTAC3 e2a0a4ab-0008-45fa-b6eb-f972d5441ce3 095704cdd4d7c7b86cdfc19756012384 { 'aliquot_tag': 'ALQ_8e0a36d6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02714.RNA-Seq.R2_L002.T C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 190215_UNC32-K00270_0147_AH3VGHBBXY_ACTTGA_S7_L002_R2_001.fastq.gz 4792391092 FASTQ R2_L002 unaligned CPTAC3 f0c394e3-0e19-4403-9368-66c2ab88ef5a f940118a1dbd40c4cdca27d9100609e9 { 'aliquot_tag': 'ALQ_f4ca65b6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02714.RNA-Seq.R2_L004.A C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 190405_UNC32-K00270_0161_BH55FNBBXY_CGTACG_S20_L004_R2_001.fastq.gz 4652175260 FASTQ R2_L004 unaligned CPTAC3 e9c4d1af-a0be-42ab-8900-64ff9b5e96f1 145047b686aa568c95ee0a08dbaf573f { 'aliquot_tag': 'ALQ_8e0a36d6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3N-02714.RNA-Seq.transcriptome.A.hg38 C3N-02714 HNSCC RNA-Seq tissue_normal CPT0177220009 66fedd31-256b-451d-8e75-74ec8260fbf9.rna_seq.transcriptome.gdc_realn.bam 12252038594 BAM transcriptome harmonized CPTAC3 ccea9044-f72b-48e6-ac4f-e32561dbdca2 cfdb4717c57714674eb368c69df34565 { 'aliquot_tag': 'ALQ_8e0a36d6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02714.RNA-Seq.transcriptome.T.hg38 C3N-02714 HNSCC RNA-Seq tumor CPT0177200009 d14851b9-a42e-474c-b085-347fa776cb63.rna_seq.transcriptome.gdc_realn.bam 11907079148 BAM transcriptome harmonized CPTAC3 196ed2de-821b-40c4-8784-9e2f19c476c6 44866f4c3d88894c9e2e44d7e4b819f9 { 'aliquot_tag': 'ALQ_f4ca65b6', 'gdc_sample_type': 'Primary Tumor' } C3N-02714.WGS.N C3N-02714 HNSCC WGS blood_normal CPT0177310002 CPT0177310002.WholeGenome.RP-1303.bam 73162848881 BAM aligned CPTAC3 7d5cf71e-56b8-42b5-9ec3-c7b215d19275 b8ece1c2d604b30185075313569dd474 { 'aliquot_tag': 'ALQ_9524462b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -32412,16 +34611,16 @@ C3N-02715.miRNA-Seq.A C3N-02715 LUAD miRNA-Seq tissue_normal CPT0178450009 19013 C3N-02715.miRNA-Seq.A.hg38 C3N-02715 LUAD miRNA-Seq tissue_normal CPT0178450009 aa0841a9-e26c-4612-a3d6-9c40b71a20fa_mirnaseq_gdc_realn.bam 282032028 BAM harmonized CPTAC3 c2204fcb-0337-4303-b338-c9c881f8e4b4 622cf6f7718ca88b0410e9a3a49629c9 { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02715.miRNA-Seq.T C3N-02715 LUAD miRNA-Seq tumor CPT0178430009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAATCG_S42_L007_R1_001.unaln.bam 232159614 BAM unaligned CPTAC3 b076785d-01b2-44a7-86b1-ac739feeb87f 4649d745d64e13f42ff412294b1f3a62 { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor' } C3N-02715.miRNA-Seq.T.hg38 C3N-02715 LUAD miRNA-Seq tumor CPT0178430009 8b5541d7-75e0-4e94-b2d9-ca1a54038201_mirnaseq_gdc_realn.bam 252238038 BAM harmonized CPTAC3 5e750405-84de-4394-b096-8ccab9e4b9ae abef246e16055e3d32ce95b215185529 { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor' } -C3N-02715.RNA-Seq.chimeric.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 d5b3513c-31f6-402e-8432-d4d09225e3fa.rna_seq.chimeric.gdc_realn.bam 584451821 BAM chimeric harmonized CPTAC3 8558a96a-9f76-4d74-9eea-c8b4c5f8a22c 9cf124221a6a668eb2fdcdc4778c2b8b { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02715.RNA-Seq.chimeric.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d763402b-36fb-4b67-b5a0-d8b9a2e42ab1.rna_seq.chimeric.gdc_realn.bam 44700798 BAM chimeric harmonized CPTAC3 83d98864-0b96-44fb-b8a1-ebf0d2dd8f0d 3fc369bffe2c89522825714da3a2a9ee { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor' } -C3N-02715.RNA-Seq.genomic.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 d5b3513c-31f6-402e-8432-d4d09225e3fa.rna_seq.genomic.gdc_realn.bam 7644055400 BAM genomic harmonized CPTAC3 e2de4843-e9c0-42f8-9530-968a39e0f978 ef239f097262f3df7eb38547ddf43173 { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02715.RNA-Seq.genomic.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d763402b-36fb-4b67-b5a0-d8b9a2e42ab1.rna_seq.genomic.gdc_realn.bam 8923774134 BAM genomic harmonized CPTAC3 25d45e4c-9232-4091-a6a4-d37ef3ee1fb9 c3bd26aaccd8d21ec330ad142afb8e15 { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor' } -C3N-02715.RNA-Seq.R1_L003.T C3N-02715 LUAD RNA-Seq tumor CPT0178430009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGAAA_S12_L003_R1_001.fastq.gz 4060589069 FASTQ R1_L003 unaligned CPTAC3 99d5a6fe-cf39-4df4-8a01-a12c30e6a658 dbdd99fcdc486ff75e79f1aa9dff2c34 { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor' } -C3N-02715.RNA-Seq.R1_L004.A C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L004_R1_001.fastq.gz 3325972702 FASTQ R1_L004 unaligned CPTAC3 643a4cde-7533-4e16-bca2-fa6b9c96054d 163e88e3a070ebc865652bfd0c3f5ea8 { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02715.RNA-Seq.R2_L003.T C3N-02715 LUAD RNA-Seq tumor CPT0178430009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGAAA_S12_L003_R2_001.fastq.gz 4075908359 FASTQ R2_L003 unaligned CPTAC3 9bd06bf2-e0b6-409b-a8ee-03d9537ce978 6f41fe3ab20df5f6aeab7f5bdd3e880d { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor' } -C3N-02715.RNA-Seq.R2_L004.A C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L004_R2_001.fastq.gz 3796835263 FASTQ R2_L004 unaligned CPTAC3 4099d089-2604-4093-9bed-ab6b922bc460 21702d95e85cf917fde7ce245deb4144 { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02715.RNA-Seq.transcriptome.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 d5b3513c-31f6-402e-8432-d4d09225e3fa.rna_seq.transcriptome.gdc_realn.bam 6250086131 BAM transcriptome harmonized CPTAC3 49de71fc-9a1e-4a93-8eec-4981f26583ec 53e28c9427fed48ccbeca8fca14775ca { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02715.RNA-Seq.transcriptome.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d763402b-36fb-4b67-b5a0-d8b9a2e42ab1.rna_seq.transcriptome.gdc_realn.bam 8159417476 BAM transcriptome harmonized CPTAC3 36c75819-eedb-467e-b5f8-2efa04849c2b 829dc5450759b5eb92aceebb7544e2fb { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor' } +C3N-02715.RNA-Seq.chimeric.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 9a6969d7-bc3c-43dd-9625-f577eeeca7f0.rna_seq.chimeric.gdc_realn.bam 584400367 BAM chimeric harmonized CPTAC3 bd8f1cd6-d2a6-49d5-a1ea-c91522fc4f91 1e943431ba4834ca63041ef13a300b14 { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02715.RNA-Seq.chimeric.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d4ab39dc-a56b-478a-8498-b1d6ddbde894.rna_seq.chimeric.gdc_realn.bam 44691360 BAM chimeric harmonized CPTAC3 76dffca6-9815-4656-8fd0-02684eb20a6b 7dd629e7fc3d17b13159341e40db7526 { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor' } +C3N-02715.RNA-Seq.genomic.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 9a6969d7-bc3c-43dd-9625-f577eeeca7f0.rna_seq.genomic.gdc_realn.bam 7644860746 BAM genomic harmonized CPTAC3 1cfdfbee-47f6-4619-b1cc-363f04fb84be 78916b1ab243d5aba86c93af46cbefba { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02715.RNA-Seq.genomic.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d4ab39dc-a56b-478a-8498-b1d6ddbde894.rna_seq.genomic.gdc_realn.bam 8924830046 BAM genomic harmonized CPTAC3 2922d2c9-58f1-4113-b55b-fcdd81153ba0 0d66a540e716b61017641ee3a1ac41a2 { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor' } +C3N-02715.RNA-Seq.R1_L003.T C3N-02715 LUAD RNA-Seq tumor CPT0178430009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGAAA_S12_L003_R1_001.fastq.gz 4060589069 FASTQ R1_L003 unaligned CPTAC3 99d5a6fe-cf39-4df4-8a01-a12c30e6a658 dbdd99fcdc486ff75e79f1aa9dff2c34 { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02715.RNA-Seq.R1_L004.A C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L004_R1_001.fastq.gz 3325972702 FASTQ R1_L004 unaligned CPTAC3 643a4cde-7533-4e16-bca2-fa6b9c96054d 163e88e3a070ebc865652bfd0c3f5ea8 { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02715.RNA-Seq.R2_L003.T C3N-02715 LUAD RNA-Seq tumor CPT0178430009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGAAA_S12_L003_R2_001.fastq.gz 4075908359 FASTQ R2_L003 unaligned CPTAC3 9bd06bf2-e0b6-409b-a8ee-03d9537ce978 6f41fe3ab20df5f6aeab7f5bdd3e880d { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02715.RNA-Seq.R2_L004.A C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 190219_UNC31-K00269_0194_AH3V53BBXY_GGCTAC_S1_L004_R2_001.fastq.gz 3796835263 FASTQ R2_L004 unaligned CPTAC3 4099d089-2604-4093-9bed-ab6b922bc460 21702d95e85cf917fde7ce245deb4144 { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02715.RNA-Seq.transcriptome.A.hg38 C3N-02715 LUAD RNA-Seq tissue_normal CPT0178450009 9a6969d7-bc3c-43dd-9625-f577eeeca7f0.rna_seq.transcriptome.gdc_realn.bam 7087001494 BAM transcriptome harmonized CPTAC3 34e1bb4d-a96f-47bc-a878-6c2b8147fd72 0e0b2c6f0faf167da4b7fe9e96bcf265 { 'aliquot_tag': 'ALQ_1c3b7932', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02715.RNA-Seq.transcriptome.T.hg38 C3N-02715 LUAD RNA-Seq tumor CPT0178430009 d4ab39dc-a56b-478a-8498-b1d6ddbde894.rna_seq.transcriptome.gdc_realn.bam 9223332551 BAM transcriptome harmonized CPTAC3 de9fc16a-4fb8-4fef-afc1-773f8418103b bf300a2c4a052bb9759a14fdfc08baad { 'aliquot_tag': 'ALQ_937b8c92', 'gdc_sample_type': 'Primary Tumor' } C3N-02715.WGS.N C3N-02715 LUAD WGS blood_normal CPT0178540002 CPT0178540002.WholeGenome.RP-1303.bam 116204569250 BAM aligned CPTAC3 8f10c6bc-98fc-40d0-bb67-3f6a2d64dbdc 54c2399692144983aada85aefac60c2f { 'aliquot_tag': 'ALQ_7dd55aaf', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02715.WGS.N.hg38 C3N-02715 LUAD WGS blood_normal CPT0178540002 e594cc1c-e76d-45f7-a1bd-9dd1b5a32558_wgs_gdc_realn.bam 169182461756 BAM harmonized CPTAC3 0ece1d84-4e97-4569-bc09-1a6efe7eebbf 4b6af13bf72677d7109a44693a1436aa { 'aliquot_tag': 'ALQ_7dd55aaf', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02715.WGS.T C3N-02715 LUAD WGS tumor CPT0178430006 CPT0178430006.WholeGenome.RP-1303.bam 121427432052 BAM aligned CPTAC3 82f02f22-9b44-4b08-9aef-ab8eacd750e7 6f5b27621952546dc1f941631da38ae6 { 'aliquot_tag': 'ALQ_3c49103', 'gdc_sample_type': 'Primary Tumor' } @@ -32437,12 +34636,15 @@ C3N-02716.MethArray.Red.T C3N-02716 HNSCC Methylation Array tumor CPT0177390006 C3N-02716.miRNA-Seq.T C3N-02716 HNSCC miRNA-Seq tumor CPT0177390009 190228_UNC32-K00270_0151_AHYLY3BBXX_GATCAG_S9_L001_R1_001.unaln.bam 214089735 BAM unaligned CPTAC3 b48518d2-4f00-423c-8e34-41d76b99e39d b584b68ae39dbd65e7bed3964ab9f1e3 { 'aliquot_tag': 'ALQ_3286d462', 'gdc_sample_type': 'Primary Tumor' } C3N-02716.miRNA-Seq.T.hg38 C3N-02716 HNSCC miRNA-Seq tumor CPT0177390009 d624b662-0c8b-46ab-9648-30e6e55c6bfb_mirnaseq_gdc_realn.bam 246357862 BAM harmonized CPTAC3 dc5e121b-412b-4c5d-9348-d01ae77f77d5 6d013493d7ee5bf6b200d9347ba2b401 { 'aliquot_tag': 'ALQ_3286d462', 'gdc_sample_type': 'Primary Tumor' } C3N-02716.RNA-Seq.chimeric.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 7a0f8098-6251-4c7a-874d-c6e636deb88f.rna_seq.chimeric.gdc_realn.bam 204715848 BAM chimeric harmonized CPTAC3 8cffda36-8d58-4f14-bf5f-3061c8efb967 c1e3c2688c6d6f46a653852528921479 { 'aliquot_tag': 'ALQ_3286d462', 'gdc_sample_type': 'Primary Tumor' } -C3N-02716.RNA-Seq.genomic.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 7a0f8098-6251-4c7a-874d-c6e636deb88f.rna_seq.genomic.gdc_realn.bam 8524850451 BAM genomic harmonized CPTAC3 6b3cc1fd-7e1f-4d05-b3f7-94726aad26dd addd04bca295cd65765dc2131ea4bd06 { 'aliquot_tag': 'ALQ_3286d462', 'gdc_sample_type': 'Primary Tumor' } -C3N-02716.RNA-Seq.R1_L003.T C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 190215_UNC32-K00270_0147_AH3VGHBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3966501182 FASTQ R1_L003 unaligned CPTAC3 f055f99e-1633-4ffe-b32e-967bdf12f93d 3291fd0949590c882e45082954ff4d6c { 'aliquot_tag': 'ALQ_3286d462', 'gdc_sample_type': 'Primary Tumor' } -C3N-02716.RNA-Seq.R1_.T C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 20210714_P1_H6_WB7988_plate1_S89_R1_001.fastq.gz 4776207004 FASTQ R1_ unaligned CPTAC3 2d1364f2-e2c9-467f-bd2c-bff4e854418f 41d232321624ac6d76cddfcd5b7289bf { 'aliquot_tag': 'ALQ_4f936cb8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02716.RNA-Seq.R2_L003.T C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 190215_UNC32-K00270_0147_AH3VGHBBXY_GATCAG_S9_L003_R2_001.fastq.gz 4322871554 FASTQ R2_L003 unaligned CPTAC3 49406ea3-f42e-4737-b584-1d03567cf44e 33a0c7384d3f4c197bf70ae991185689 { 'aliquot_tag': 'ALQ_3286d462', 'gdc_sample_type': 'Primary Tumor' } -C3N-02716.RNA-Seq.R2_.T C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 20210714_P1_H6_WB7988_plate1_S89_R2_001.fastq.gz 4881239176 FASTQ R2_ unaligned CPTAC3 89a90b50-c8c5-4a39-88ae-d6821f0d0a1b fac1b90f26df5b7f1803132c5f409cdb { 'aliquot_tag': 'ALQ_4f936cb8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02716.RNA-Seq.chimeric.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 b5f3a015-214d-413d-bf63-fd6f92fde1c9.rna_seq.chimeric.gdc_realn.bam 138529077 BAM chimeric harmonized CPTAC3 b1662126-af39-441a-acf9-537a731e1cb0 402098802f0399908859198681a813ba { 'aliquot_tag': 'ALQ_4f936cb8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02716.RNA-Seq.genomic.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 7a0f8098-6251-4c7a-874d-c6e636deb88f.rna_seq.genomic.gdc_realn.bam 8524850451 BAM genomic harmonized CPTAC3 f0e6875c-bda1-433c-9f18-a838ad14ad5d addd04bca295cd65765dc2131ea4bd06 { 'aliquot_tag': 'ALQ_3286d462', 'gdc_sample_type': 'Primary Tumor' } +C3N-02716.RNA-Seq.genomic.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 b5f3a015-214d-413d-bf63-fd6f92fde1c9.rna_seq.genomic.gdc_realn.bam 8205917103 BAM genomic harmonized CPTAC3 540fbebe-d5be-4edb-a18f-6c21cd53d715 8e894d89e5fcdeb82682b7a05d336212 { 'aliquot_tag': 'ALQ_4f936cb8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02716.RNA-Seq.R1_L003.T C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 190215_UNC32-K00270_0147_AH3VGHBBXY_GATCAG_S9_L003_R1_001.fastq.gz 3966501182 FASTQ R1_L003 unaligned CPTAC3 f055f99e-1633-4ffe-b32e-967bdf12f93d 3291fd0949590c882e45082954ff4d6c { 'aliquot_tag': 'ALQ_3286d462', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02716.RNA-Seq.R2_L003.T C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 190215_UNC32-K00270_0147_AH3VGHBBXY_GATCAG_S9_L003_R2_001.fastq.gz 4322871554 FASTQ R2_L003 unaligned CPTAC3 49406ea3-f42e-4737-b584-1d03567cf44e 33a0c7384d3f4c197bf70ae991185689 { 'aliquot_tag': 'ALQ_3286d462', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02716.RNA-Seq.T C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 20210714_P1_H6_WB7988_plate1_S89_R1_001.fastq.gz 4776207004 FASTQ unaligned CPTAC3 2d1364f2-e2c9-467f-bd2c-bff4e854418f 41d232321624ac6d76cddfcd5b7289bf +C3N-02716.RNA-Seq.T C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 20210714_P1_H6_WB7988_plate1_S89_R2_001.fastq.gz 4881239176 FASTQ unaligned CPTAC3 89a90b50-c8c5-4a39-88ae-d6821f0d0a1b fac1b90f26df5b7f1803132c5f409cdb C3N-02716.RNA-Seq.transcriptome.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177390009 7a0f8098-6251-4c7a-874d-c6e636deb88f.rna_seq.transcriptome.gdc_realn.bam 10858584491 BAM transcriptome harmonized CPTAC3 3c06402f-d668-4671-b9ac-f73954fcc700 c625f10d1144b5bfa770bc28d7ebe3f4 { 'aliquot_tag': 'ALQ_3286d462', 'gdc_sample_type': 'Primary Tumor' } +C3N-02716.RNA-Seq.transcriptome.T.hg38 C3N-02716 HNSCC RNA-Seq tumor CPT0177420011 b5f3a015-214d-413d-bf63-fd6f92fde1c9.rna_seq.transcriptome.gdc_realn.bam 5629009216 BAM transcriptome harmonized CPTAC3 4a6e37c9-8e5d-48de-95b7-836bbf30cd62 f3504e8067fc8177a936b8124299df7d { 'aliquot_tag': 'ALQ_4f936cb8', 'gdc_sample_type': 'Primary Tumor' } C3N-02716.WGS.N C3N-02716 HNSCC WGS blood_normal CPT0177460002 CPT0177460002.WholeGenome.RP-1303.bam 54711236571 BAM aligned CPTAC3 389002d0-a472-4211-877a-ac06ee93287b 45d9034ef70f3e1b305c8ec5634f65bf { 'aliquot_tag': 'ALQ_3a01aa83', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02716.WGS.N.hg38 C3N-02716 HNSCC WGS blood_normal CPT0177460002 bde91dec-8d07-4ee3-99b4-6971f804db5c_wgs_gdc_realn.bam 79666208867 BAM harmonized CPTAC3 f9d79874-b399-49ef-baf0-814d2e91992b 8cf2fbdee2b8c44fcb470b312e18a3fc { 'aliquot_tag': 'ALQ_3a01aa83', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02716.WGS.T C3N-02716 HNSCC WGS tumor CPT0177390006 CPT0177390006.WholeGenome.RP-1303.bam 61396402040 BAM aligned CPTAC3 9d114635-b2f9-48d7-8788-9fad9f6c507f f9c019740ecb074d6ba13f386b01ed5d { 'aliquot_tag': 'ALQ_a239c9f3', 'gdc_sample_type': 'Primary Tumor' } @@ -32459,16 +34661,16 @@ C3N-02718.miRNA-Seq.A C3N-02718 LUAD miRNA-Seq tissue_normal CPT0178630008 19013 C3N-02718.miRNA-Seq.A.hg38 C3N-02718 LUAD miRNA-Seq tissue_normal CPT0178630008 d17bb5b6-8ec1-4d90-a8bd-46cc5b8284d0_mirnaseq_gdc_realn.bam 274779961 BAM harmonized CPTAC3 48d16276-6552-4b3f-bd9e-baa289bdf69c 56db28af56f55c9c612495548764081c { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02718.miRNA-Seq.T C3N-02718 LUAD miRNA-Seq tumor CPT0178620009 190130_UNC31-K00269_0188_BH2FGCBBXY_TACAGC_S43_L007_R1_001.unaln.bam 170289195 BAM unaligned CPTAC3 5d31f8de-663f-42d6-a417-53e92a65403c f18f0078ce93b292b453fde2fe31659c { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor' } C3N-02718.miRNA-Seq.T.hg38 C3N-02718 LUAD miRNA-Seq tumor CPT0178620009 381b34f3-b3b3-46a1-9a2f-ee9e520795a5_mirnaseq_gdc_realn.bam 186840577 BAM harmonized CPTAC3 51e80c0f-7cbf-4a13-bdad-e238e1808f1c fbff89d2997c64dceeedd423b3bbd3a0 { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor' } -C3N-02718.RNA-Seq.chimeric.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 ebdc9cbd-b94d-429a-b559-207382a78f19.rna_seq.chimeric.gdc_realn.bam 344910933 BAM chimeric harmonized CPTAC3 1632c976-478b-4387-b907-e6b6ea8d805c 2ac95230a955997445f5bbe9a11ec83d { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02718.RNA-Seq.chimeric.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 b36ec54b-ae66-48b4-9f74-ea5f2b2dc31d.rna_seq.chimeric.gdc_realn.bam 55915398 BAM chimeric harmonized CPTAC3 ec9c6b58-1311-4895-bdc4-56c2811c760a 30d61af0440d630272592794558cb848 { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor' } -C3N-02718.RNA-Seq.genomic.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 ebdc9cbd-b94d-429a-b559-207382a78f19.rna_seq.genomic.gdc_realn.bam 7586699381 BAM genomic harmonized CPTAC3 d0887ab7-a384-48a4-8175-4350ee392c63 664667ca8cc8bd4972e114100bd1462c { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02718.RNA-Seq.genomic.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 b36ec54b-ae66-48b4-9f74-ea5f2b2dc31d.rna_seq.genomic.gdc_realn.bam 10921732174 BAM genomic harmonized CPTAC3 fdb12f6b-e2b4-4c89-8162-fc6410fc9bcf 6256a3b40f11b6d6d44a7ac7dd84d2bf { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor' } -C3N-02718.RNA-Seq.R1_L002.T C3N-02718 LUAD RNA-Seq tumor CPT0178620009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGGCC_S7_L002_R1_001.fastq.gz 4237221425 FASTQ R1_L002 unaligned CPTAC3 1a459018-a847-4dc6-b916-d26873443a99 041570c614f59118eb7368a5cab5af58 { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor' } -C3N-02718.RNA-Seq.R1_L003.A C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 190201_UNC31-K00269_0189_AH3L7FBBXY_CTTGTA_S9_L003_R1_001.fastq.gz 3216831020 FASTQ R1_L003 unaligned CPTAC3 014c4884-0a7c-499f-b4ea-85745d438e4f 0cd60a55dc2393bddb65ae4ed281a8c4 { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02718.RNA-Seq.R2_L002.T C3N-02718 LUAD RNA-Seq tumor CPT0178620009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGGCC_S7_L002_R2_001.fastq.gz 4592649349 FASTQ R2_L002 unaligned CPTAC3 e7b10c68-31e0-42ed-8e2d-39816e24c52a d85c5fdfcfd264de5449b150fa92f939 { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor' } -C3N-02718.RNA-Seq.R2_L003.A C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 190201_UNC31-K00269_0189_AH3L7FBBXY_CTTGTA_S9_L003_R2_001.fastq.gz 3574959410 FASTQ R2_L003 unaligned CPTAC3 3128bf1d-a5e2-4d72-a542-22c503956735 aba1cb94f9739a9333a0eee10adaf09c { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02718.RNA-Seq.transcriptome.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 ebdc9cbd-b94d-429a-b559-207382a78f19.rna_seq.transcriptome.gdc_realn.bam 7323024559 BAM transcriptome harmonized CPTAC3 2de99ad1-2f22-4218-abb5-50f765606e78 ee88412e288c44d771b3089930064a8a { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02718.RNA-Seq.transcriptome.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 b36ec54b-ae66-48b4-9f74-ea5f2b2dc31d.rna_seq.transcriptome.gdc_realn.bam 8840257229 BAM transcriptome harmonized CPTAC3 f8982a4a-caa5-4521-9b07-3da8d193906b e191253d9280461bfd51162f8067ae1c { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor' } +C3N-02718.RNA-Seq.chimeric.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 efe3690f-06e7-4c84-91f3-60dd2c585c2f.rna_seq.chimeric.gdc_realn.bam 344886195 BAM chimeric harmonized CPTAC3 2b172b4e-6425-4569-aa92-baf7e7661e50 2f330d9d349e07d52c7cc61f0d1aaada { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02718.RNA-Seq.chimeric.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 f2ef991f-dad0-4f81-9f46-e6c59594f178.rna_seq.chimeric.gdc_realn.bam 55944335 BAM chimeric harmonized CPTAC3 c4064db0-7606-4a5d-95ca-1d995484b42a 55ce409741871e69efaad8e9f31aebbc { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor' } +C3N-02718.RNA-Seq.genomic.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 efe3690f-06e7-4c84-91f3-60dd2c585c2f.rna_seq.genomic.gdc_realn.bam 7588693603 BAM genomic harmonized CPTAC3 d1be54ae-968a-4176-8c5d-3f5c3d1aeefc f971f4ec71c84799e02eb9009177bed8 { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02718.RNA-Seq.genomic.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 f2ef991f-dad0-4f81-9f46-e6c59594f178.rna_seq.genomic.gdc_realn.bam 10925758073 BAM genomic harmonized CPTAC3 0549236e-c8a6-492f-be72-b24281d87ca0 326b0ede08e9bdb1716c91e078cbd3bb { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor' } +C3N-02718.RNA-Seq.R1_L002.T C3N-02718 LUAD RNA-Seq tumor CPT0178620009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGGCC_S7_L002_R1_001.fastq.gz 4237221425 FASTQ R1_L002 unaligned CPTAC3 1a459018-a847-4dc6-b916-d26873443a99 041570c614f59118eb7368a5cab5af58 { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02718.RNA-Seq.R1_L003.A C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 190201_UNC31-K00269_0189_AH3L7FBBXY_CTTGTA_S9_L003_R1_001.fastq.gz 3216831020 FASTQ R1_L003 unaligned CPTAC3 014c4884-0a7c-499f-b4ea-85745d438e4f 0cd60a55dc2393bddb65ae4ed281a8c4 { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02718.RNA-Seq.R2_L002.T C3N-02718 LUAD RNA-Seq tumor CPT0178620009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTGGCC_S7_L002_R2_001.fastq.gz 4592649349 FASTQ R2_L002 unaligned CPTAC3 e7b10c68-31e0-42ed-8e2d-39816e24c52a d85c5fdfcfd264de5449b150fa92f939 { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02718.RNA-Seq.R2_L003.A C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 190201_UNC31-K00269_0189_AH3L7FBBXY_CTTGTA_S9_L003_R2_001.fastq.gz 3574959410 FASTQ R2_L003 unaligned CPTAC3 3128bf1d-a5e2-4d72-a542-22c503956735 aba1cb94f9739a9333a0eee10adaf09c { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02718.RNA-Seq.transcriptome.A.hg38 C3N-02718 LUAD RNA-Seq tissue_normal CPT0178630008 efe3690f-06e7-4c84-91f3-60dd2c585c2f.rna_seq.transcriptome.gdc_realn.bam 8212400513 BAM transcriptome harmonized CPTAC3 faf57426-8f30-4fcd-b8ee-aa27610ac48f 0326d1d60a88dcb4c3a9c1190b465c00 { 'aliquot_tag': 'ALQ_a9b41d0f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02718.RNA-Seq.transcriptome.T.hg38 C3N-02718 LUAD RNA-Seq tumor CPT0178620009 f2ef991f-dad0-4f81-9f46-e6c59594f178.rna_seq.transcriptome.gdc_realn.bam 9455351118 BAM transcriptome harmonized CPTAC3 ee16fa09-219c-4bc5-956b-75ddf42aaa03 e1250b2030b576d38b279feae5296fa1 { 'aliquot_tag': 'ALQ_e3d30429', 'gdc_sample_type': 'Primary Tumor' } C3N-02718.WGS.N C3N-02718 LUAD WGS blood_normal CPT0178720002 CPT0178720002.WholeGenome.RP-1303.bam 116130482592 BAM aligned CPTAC3 58fe3455-3fa9-4cf4-adb6-7fb4237b4b9e 26fefc4eeb98dce7abdb2e4e0003a291 { 'aliquot_tag': 'ALQ_bf5d0e04', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02718.WGS.N.hg38 C3N-02718 LUAD WGS blood_normal CPT0178720002 67b74651-4a43-4632-964a-dac9ca7fecd2_wgs_gdc_realn.bam 167722313865 BAM harmonized CPTAC3 9753c811-ad70-4d6e-8c2b-602ce8e18725 02270a16e40e8f226683a4784df10451 { 'aliquot_tag': 'ALQ_bf5d0e04', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02718.WGS.T C3N-02718 LUAD WGS tumor CPT0178620006 CPT0178620006.WholeGenome.RP-1303.bam 49544054043 BAM aligned CPTAC3 7cf9ed95-39a5-4f64-87b9-d82cceef7754 08d6e0f8e8fd9f45f514e85a4e40ca1a { 'aliquot_tag': 'ALQ_736c19b8', 'gdc_sample_type': 'Primary Tumor' } @@ -32487,16 +34689,16 @@ C3N-02721.miRNA-Seq.A C3N-02721 LUAD miRNA-Seq tissue_normal CPT0178810009 19013 C3N-02721.miRNA-Seq.A.hg38 C3N-02721 LUAD miRNA-Seq tissue_normal CPT0178810009 4bfdf094-a8e1-44af-ac38-5230c67ab2d7_mirnaseq_gdc_realn.bam 246845314 BAM harmonized CPTAC3 258ee08a-0d35-4e35-8698-5fa5bd456fd9 f9797062193c932bbeecbc62e5de23f7 { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02721.miRNA-Seq.T C3N-02721 LUAD miRNA-Seq tumor CPT0178800009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTGGCC_S1_L006_R1_001.unaln.bam 203477465 BAM unaligned CPTAC3 496e9b03-4613-44d9-843e-b20224b8e9c9 3b0642f3eba0a743f81238e0604e884f { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor' } C3N-02721.miRNA-Seq.T.hg38 C3N-02721 LUAD miRNA-Seq tumor CPT0178800009 6bc47314-a931-47a1-97b6-90375dc7d2f4_mirnaseq_gdc_realn.bam 224550621 BAM harmonized CPTAC3 a1cd6004-8d70-4834-a198-736f37c7def0 743c132a8d1d1785e3f931d0fc5371ac { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor' } -C3N-02721.RNA-Seq.chimeric.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 63c005c3-abd0-4cbc-b534-887418569e45.rna_seq.chimeric.gdc_realn.bam 393950638 BAM chimeric harmonized CPTAC3 680bc88e-ad62-4165-8096-48ead1b8e5e3 03bcea62f218d10d10e9755be16c0c84 { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02721.RNA-Seq.chimeric.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 ebfe8d77-19cf-4436-9388-0b4e19537c40.rna_seq.chimeric.gdc_realn.bam 46049135 BAM chimeric harmonized CPTAC3 32997875-5d50-4570-9670-81bcd3854284 96bc97b35b43a59a1f797807dd7e7a6c { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor' } -C3N-02721.RNA-Seq.genomic.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 63c005c3-abd0-4cbc-b534-887418569e45.rna_seq.genomic.gdc_realn.bam 7504160441 BAM genomic harmonized CPTAC3 522745ef-60f4-4b56-a2e7-329a380da132 b858ba2d1066045b10bd6cb5a1721a2d { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02721.RNA-Seq.genomic.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 ebfe8d77-19cf-4436-9388-0b4e19537c40.rna_seq.genomic.gdc_realn.bam 9205351414 BAM genomic harmonized CPTAC3 07cd705d-aaa5-4f3a-bbc4-b91ea3d10e61 d5e977f318d2740d80e317fcc51b36f3 { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor' } -C3N-02721.RNA-Seq.R1_L002.A C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTCAA_S5_L002_R1_001.fastq.gz 3311038609 FASTQ R1_L002 unaligned CPTAC3 3c56248a-08ae-4460-8f93-ce4fd74e3406 5c51dd3d75b5bf612a2ec906b0407e10 { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02721.RNA-Seq.R1_L007.T C3N-02721 LUAD RNA-Seq tumor CPT0178800009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTTTCG_S23_L007_R1_001.fastq.gz 3963700474 FASTQ R1_L007 unaligned CPTAC3 8f5345f6-e100-4e0e-bdb2-39ac6d75cd1c 93db658b5cf591a0be47452ad3d60800 { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor' } -C3N-02721.RNA-Seq.R2_L002.A C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTCAA_S5_L002_R2_001.fastq.gz 3569820931 FASTQ R2_L002 unaligned CPTAC3 5eac8375-120f-4fb9-9caf-1e4ecbbc075d ce7f17d5dcf91ba178a15cff01b4e4d0 { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02721.RNA-Seq.R2_L007.T C3N-02721 LUAD RNA-Seq tumor CPT0178800009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTTTCG_S23_L007_R2_001.fastq.gz 4494736949 FASTQ R2_L007 unaligned CPTAC3 0125e60b-4a2c-4158-943c-2bed5fce13e4 623ca1ae2529300955549027ebcfa30c { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor' } -C3N-02721.RNA-Seq.transcriptome.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 63c005c3-abd0-4cbc-b534-887418569e45.rna_seq.transcriptome.gdc_realn.bam 6580552285 BAM transcriptome harmonized CPTAC3 b71cf06a-70e2-42fa-983b-2d42189d3a0f 55fcd35dcb07864248be16d86b020e54 { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02721.RNA-Seq.transcriptome.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 ebfe8d77-19cf-4436-9388-0b4e19537c40.rna_seq.transcriptome.gdc_realn.bam 9714058487 BAM transcriptome harmonized CPTAC3 0141a43e-3289-43a9-861d-90fe1b6c7a4a cf783b5d3e5ed53bfd3d4a9f3ae19641 { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor' } +C3N-02721.RNA-Seq.chimeric.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 38043882-c481-42de-a8ee-97ce0511a24b.rna_seq.chimeric.gdc_realn.bam 393912738 BAM chimeric harmonized CPTAC3 5bd208d1-65ea-4d0d-8400-1f468c69c29c f69aba9850b66c8dd5dbc3797a1e412e { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02721.RNA-Seq.chimeric.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 9eb14ddb-075f-4cdb-a7a8-eac913faaa98.rna_seq.chimeric.gdc_realn.bam 46098537 BAM chimeric harmonized CPTAC3 83ecf2ea-a43b-431e-99a8-d2064cbaa29d 145897c74c5367310a4f989bd639b8ee { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor' } +C3N-02721.RNA-Seq.genomic.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 38043882-c481-42de-a8ee-97ce0511a24b.rna_seq.genomic.gdc_realn.bam 7505596406 BAM genomic harmonized CPTAC3 388f4f96-99fd-4fcc-aa9d-02b94a5af9d6 162f45bad4992e4778b8c2578e8beced { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02721.RNA-Seq.genomic.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 9eb14ddb-075f-4cdb-a7a8-eac913faaa98.rna_seq.genomic.gdc_realn.bam 9209293091 BAM genomic harmonized CPTAC3 0e777352-a175-49e8-90d5-99b25edfd55f 1d004e18c36a0cbc03a504f893522672 { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor' } +C3N-02721.RNA-Seq.R1_L002.A C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTCAA_S5_L002_R1_001.fastq.gz 3311038609 FASTQ R1_L002 unaligned CPTAC3 3c56248a-08ae-4460-8f93-ce4fd74e3406 5c51dd3d75b5bf612a2ec906b0407e10 { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02721.RNA-Seq.R1_L007.T C3N-02721 LUAD RNA-Seq tumor CPT0178800009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTTTCG_S23_L007_R1_001.fastq.gz 3963700474 FASTQ R1_L007 unaligned CPTAC3 8f5345f6-e100-4e0e-bdb2-39ac6d75cd1c 93db658b5cf591a0be47452ad3d60800 { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02721.RNA-Seq.R2_L002.A C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTCAA_S5_L002_R2_001.fastq.gz 3569820931 FASTQ R2_L002 unaligned CPTAC3 5eac8375-120f-4fb9-9caf-1e4ecbbc075d ce7f17d5dcf91ba178a15cff01b4e4d0 { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02721.RNA-Seq.R2_L007.T C3N-02721 LUAD RNA-Seq tumor CPT0178800009 190201_UNC31-K00269_0190_BH3LFKBBXY_GTTTCG_S23_L007_R2_001.fastq.gz 4494736949 FASTQ R2_L007 unaligned CPTAC3 0125e60b-4a2c-4158-943c-2bed5fce13e4 623ca1ae2529300955549027ebcfa30c { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02721.RNA-Seq.transcriptome.A.hg38 C3N-02721 LUAD RNA-Seq tissue_normal CPT0178810009 38043882-c481-42de-a8ee-97ce0511a24b.rna_seq.transcriptome.gdc_realn.bam 7446941841 BAM transcriptome harmonized CPTAC3 5afa0f58-2fc5-4586-8395-632ce50d740b a04f31d32eb76825a2c51e7759d3541c { 'aliquot_tag': 'ALQ_9e791f89', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02721.RNA-Seq.transcriptome.T.hg38 C3N-02721 LUAD RNA-Seq tumor CPT0178800009 9eb14ddb-075f-4cdb-a7a8-eac913faaa98.rna_seq.transcriptome.gdc_realn.bam 10730157312 BAM transcriptome harmonized CPTAC3 4f1957e3-5166-4604-8884-4b9aef3a1a3c 9286728037d354f98bdca4e4988b5fbc { 'aliquot_tag': 'ALQ_a3193639', 'gdc_sample_type': 'Primary Tumor' } C3N-02721.WGS.N C3N-02721 LUAD WGS blood_normal CPT0178900002 CPT0178900002.WholeGenome.RP-1303.bam 116495578059 BAM aligned CPTAC3 25b6180e-7ffd-48be-b421-35a0ad5eabc1 29e50a8c1815bff19a95c2858a96c6b5 { 'aliquot_tag': 'ALQ_ff973c14', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02721.WGS.N.hg38 C3N-02721 LUAD WGS blood_normal CPT0178900002 e5ed6752-7079-41f8-9fd3-2925e8c90155_wgs_gdc_realn.bam 168281135953 BAM harmonized CPTAC3 9b4f943d-df31-4af6-8440-8c050e224e61 41930ffe63a9897e306964ff04103c06 { 'aliquot_tag': 'ALQ_ff973c14', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02721.WGS.T C3N-02721 LUAD WGS tumor CPT0178800006 CPT0178800006.WholeGenome.RP-1303.bam 86979596607 BAM aligned CPTAC3 868c6210-0711-40c0-b4a6-e3c7fa63d4bb ec28664cf0f64ad2be5e92a23b950f48 { 'aliquot_tag': 'ALQ_33a62ba8', 'gdc_sample_type': 'Primary Tumor' } @@ -32515,16 +34717,16 @@ C3N-02723.miRNA-Seq.A C3N-02723 CCRCC miRNA-Seq tissue_normal CPT0176250009 1901 C3N-02723.miRNA-Seq.A.hg38 C3N-02723 CCRCC miRNA-Seq tissue_normal CPT0176250009 3bfd6572-f631-4dbb-8aac-d971b77f0435_mirnaseq_gdc_realn.bam 189341343 BAM harmonized CPTAC3 bdc0a79e-4cb1-4cd3-80e4-93cd19820f84 4b16b45a17cf49a819e034833d01efeb { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02723.miRNA-Seq.T C3N-02723 CCRCC miRNA-Seq tumor CPT0176220009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATGAGC_S29_L005_R1_001.unaln.bam 210180146 BAM unaligned CPTAC3 e00b4c98-cf47-4216-8c78-319a49de4b26 6c83f27236356f0c0a20439f39873fbc { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor' } C3N-02723.miRNA-Seq.T.hg38 C3N-02723 CCRCC miRNA-Seq tumor CPT0176220009 987b69b7-1756-4c38-bf0f-48fb18af13de_mirnaseq_gdc_realn.bam 230806862 BAM harmonized CPTAC3 80d5beac-df81-4f9b-9fac-8dc94e7f7e7a 9665a16a2ae6e61df69c50bda735d362 { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor' } -C3N-02723.RNA-Seq.chimeric.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 c1ae4bbf-defa-4b29-ab4d-38a53068c9a8.rna_seq.chimeric.gdc_realn.bam 27760024 BAM chimeric harmonized CPTAC3 6863684d-634a-488c-a362-466bd88b6ceb d4680ef441ed1a24c6789f7aaa59caa4 { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02723.RNA-Seq.chimeric.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 94160bb2-50b9-4889-9251-5a6878ad1d19.rna_seq.chimeric.gdc_realn.bam 29467442 BAM chimeric harmonized CPTAC3 9ee36e1a-b2c6-4d6d-98a3-81d5810a49d2 5be5355c65db48577930c550b7997091 { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor' } -C3N-02723.RNA-Seq.genomic.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 c1ae4bbf-defa-4b29-ab4d-38a53068c9a8.rna_seq.genomic.gdc_realn.bam 7913777731 BAM genomic harmonized CPTAC3 741f7fc6-0600-46d8-b32e-2a3677342168 bbac7e2eae1b20630a410205694e9557 { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02723.RNA-Seq.genomic.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 94160bb2-50b9-4889-9251-5a6878ad1d19.rna_seq.genomic.gdc_realn.bam 6919880528 BAM genomic harmonized CPTAC3 ca22a9a8-7412-4e75-81e5-74fa9619e19e ed6b2f5c9771596229a68075c4c4f594 { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor' } -C3N-02723.RNA-Seq.R1_L002.A C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L002_R1_001.fastq.gz 3534084095 FASTQ R1_L002 unaligned CPTAC3 f256e9b6-50c3-4e92-9028-3f7c96ae79f2 8c72a8146e744d62f41ef9e6ce75cd9d { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02723.RNA-Seq.R1_L005.T C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGATGT_S18_L005_R1_001.fastq.gz 3178612142 FASTQ R1_L005 unaligned CPTAC3 ad631a15-29ef-46cf-8097-83a519d38ca5 1f27db49e764aed9bae5dc10ba726a6d { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor' } -C3N-02723.RNA-Seq.R2_L002.A C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L002_R2_001.fastq.gz 3726325895 FASTQ R2_L002 unaligned CPTAC3 f8f97778-37d0-4c46-b29b-203e9b4bbd13 b5a58f1b4ea7b6d1483d1ea54d114873 { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02723.RNA-Seq.R2_L005.T C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGATGT_S18_L005_R2_001.fastq.gz 3316996449 FASTQ R2_L005 unaligned CPTAC3 5f293b5e-b90e-4059-938d-ea17328d3681 8bac6bf75547e802c30750898e6fbd45 { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor' } -C3N-02723.RNA-Seq.transcriptome.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 c1ae4bbf-defa-4b29-ab4d-38a53068c9a8.rna_seq.transcriptome.gdc_realn.bam 7705598003 BAM transcriptome harmonized CPTAC3 27aaa14f-f2d3-4e19-af2c-b6ac4b6bc2c7 b9264ba36268311b20a12204f7dd6aec { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02723.RNA-Seq.transcriptome.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 94160bb2-50b9-4889-9251-5a6878ad1d19.rna_seq.transcriptome.gdc_realn.bam 7569727449 BAM transcriptome harmonized CPTAC3 f4d66d01-3249-45ea-be57-9d6f707cdf5f df54cfa34e484974350c623cf6097525 { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor' } +C3N-02723.RNA-Seq.chimeric.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 739eb999-dcfb-4b1b-8e88-af1e17d040bd.rna_seq.chimeric.gdc_realn.bam 27745852 BAM chimeric harmonized CPTAC3 f22007fc-e8a6-4be0-8494-6c416992fc53 d8d7b6eb037735fb950c13a8252e5ad5 { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02723.RNA-Seq.chimeric.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 81817413-9a9e-4061-9b00-dde9a9c4db40.rna_seq.chimeric.gdc_realn.bam 29444514 BAM chimeric harmonized CPTAC3 8e73ff22-2f89-45dd-bfee-6d964670cb16 1fc2b3738e3e57d4c91d0cc85c4199d9 { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor' } +C3N-02723.RNA-Seq.genomic.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 739eb999-dcfb-4b1b-8e88-af1e17d040bd.rna_seq.genomic.gdc_realn.bam 7915146947 BAM genomic harmonized CPTAC3 7912e017-d152-453e-919b-375ce58ce05f b763aa666df051eaf0f34bbc04be7084 { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02723.RNA-Seq.genomic.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 81817413-9a9e-4061-9b00-dde9a9c4db40.rna_seq.genomic.gdc_realn.bam 6921319908 BAM genomic harmonized CPTAC3 919d0cd5-1eb4-4d34-afad-b8ffee752773 ba0821869618f808bcec7ff0fa54b3df { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor' } +C3N-02723.RNA-Seq.R1_L002.A C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L002_R1_001.fastq.gz 3534084095 FASTQ R1_L002 unaligned CPTAC3 f256e9b6-50c3-4e92-9028-3f7c96ae79f2 8c72a8146e744d62f41ef9e6ce75cd9d { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02723.RNA-Seq.R1_L005.T C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGATGT_S18_L005_R1_001.fastq.gz 3178612142 FASTQ R1_L005 unaligned CPTAC3 ad631a15-29ef-46cf-8097-83a519d38ca5 1f27db49e764aed9bae5dc10ba726a6d { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02723.RNA-Seq.R2_L002.A C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L002_R2_001.fastq.gz 3726325895 FASTQ R2_L002 unaligned CPTAC3 f8f97778-37d0-4c46-b29b-203e9b4bbd13 b5a58f1b4ea7b6d1483d1ea54d114873 { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02723.RNA-Seq.R2_L005.T C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 190123_UNC31-K00269_0183_BH3L7LBBXY_CGATGT_S18_L005_R2_001.fastq.gz 3316996449 FASTQ R2_L005 unaligned CPTAC3 5f293b5e-b90e-4059-938d-ea17328d3681 8bac6bf75547e802c30750898e6fbd45 { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02723.RNA-Seq.transcriptome.A.hg38 C3N-02723 CCRCC RNA-Seq tissue_normal CPT0176250009 739eb999-dcfb-4b1b-8e88-af1e17d040bd.rna_seq.transcriptome.gdc_realn.bam 8763341527 BAM transcriptome harmonized CPTAC3 6f33a502-196e-465d-aa18-e8eb615c3b49 4f34f21ad379379517f3311b6381f397 { 'aliquot_tag': 'ALQ_9a5de172', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02723.RNA-Seq.transcriptome.T.hg38 C3N-02723 CCRCC RNA-Seq tumor CPT0176220009 81817413-9a9e-4061-9b00-dde9a9c4db40.rna_seq.transcriptome.gdc_realn.bam 8640669824 BAM transcriptome harmonized CPTAC3 a3f34983-e22f-4a16-ab50-58fb4ee920e4 2821b1878bfebdcc8c67fa9989410863 { 'aliquot_tag': 'ALQ_287d3d62', 'gdc_sample_type': 'Primary Tumor' } C3N-02723.WGS.N C3N-02723 CCRCC WGS blood_normal CPT0176340002 CPT0176340002.WholeGenome.RP-1303.bam 103654504012 BAM aligned CPTAC3 244c32cf-2a6a-4aef-a36f-b94e5e62a99a 9463390a4db73fb1d2b5b1e3f7a13a7e { 'aliquot_tag': 'ALQ_fbb3c2ef', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02723.WGS.N.hg38 C3N-02723 CCRCC WGS blood_normal CPT0176340002 f90c3f68-f919-476c-9f15-7347b79bb752_wgs_gdc_realn.bam 157477429627 BAM harmonized CPTAC3 0b99e49b-b94e-45ae-857c-48ac16d5734b 331bd446c8ec9895a41de916f742143f { 'aliquot_tag': 'ALQ_fbb3c2ef', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02723.WGS.T C3N-02723 CCRCC WGS tumor CPT0176220006 CPT0176220006.WholeGenome.RP-1303.bam 113149926041 BAM aligned CPTAC3 1981c5ff-8bd8-4492-aca9-d8cb9e139543 53de93cf80f16761dfb189cbe97738e3 { 'aliquot_tag': 'ALQ_b8c220f3', 'gdc_sample_type': 'Primary Tumor' } @@ -32543,16 +34745,16 @@ C3N-02726.miRNA-Seq.A C3N-02726 CCRCC miRNA-Seq tissue_normal CPT0176430009 1901 C3N-02726.miRNA-Seq.A.hg38 C3N-02726 CCRCC miRNA-Seq tissue_normal CPT0176430009 a4ce68d9-c359-4c11-b417-16a4b5b93976_mirnaseq_gdc_realn.bam 248879703 BAM harmonized CPTAC3 fe75653c-010b-41c3-be4e-669eba7b2b6e c7f8cc6dc8ee040754f3ca9d114d6479 { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02726.miRNA-Seq.T C3N-02726 CCRCC miRNA-Seq tumor CPT0176400009 190130_UNC31-K00269_0188_BH2FGCBBXY_ATTCCT_S30_L005_R1_001.unaln.bam 251857307 BAM unaligned CPTAC3 651ec5b1-2a3d-4244-bfe9-dddf7ed27331 36345ba54815c34c2c015a915aed5661 { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor' } C3N-02726.miRNA-Seq.T.hg38 C3N-02726 CCRCC miRNA-Seq tumor CPT0176400009 800c19e6-48cb-4f63-b375-cf0ef713795b_mirnaseq_gdc_realn.bam 278128275 BAM harmonized CPTAC3 2400d11e-f497-4681-b72c-211bf6828a58 75059b417e60ed929f73a8d4e6f5f6a8 { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02726.RNA-Seq.chimeric.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 692939ee-4d98-4beb-8c2e-2a8a1456fc4e.rna_seq.chimeric.gdc_realn.bam 34938674 BAM chimeric harmonized CPTAC3 a4a28fbd-ac3a-4105-8347-9159fc1c0092 abbbc6b8a14ae6286fe2610185da8b34 { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02726.RNA-Seq.chimeric.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 ccfe186b-3888-41d6-9f79-32fccc651505.rna_seq.chimeric.gdc_realn.bam 29285755 BAM chimeric harmonized CPTAC3 5e1dc4b2-2d84-430f-8e62-94a905818c42 1ac9783d2a47ff97ab3f0fcecac4e250 { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02726.RNA-Seq.genomic.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 692939ee-4d98-4beb-8c2e-2a8a1456fc4e.rna_seq.genomic.gdc_realn.bam 9619356456 BAM genomic harmonized CPTAC3 2062794c-0cbd-44a1-a3b0-e31e1ec7e264 938971ab773210aacaf3b3ed5efefc1c { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02726.RNA-Seq.genomic.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 ccfe186b-3888-41d6-9f79-32fccc651505.rna_seq.genomic.gdc_realn.bam 6051033697 BAM genomic harmonized CPTAC3 195fba89-53e9-4d73-a87b-59a5bae6efa8 8e417fb6897d5740704ff6b88bac2f44 { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02726.RNA-Seq.R1_L002.A C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L002_R1_001.fastq.gz 4407306906 FASTQ R1_L002 unaligned CPTAC3 13a1cfba-4d90-4fb7-888d-76e1686d23f6 29fe2c496d2ce1d64a8e5e3bc457d1a3 { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02726.RNA-Seq.R1_L005.T C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 190123_UNC31-K00269_0183_BH3L7LBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 2874892214 FASTQ R1_L005 unaligned CPTAC3 9f265f85-0ddc-4b43-8cb7-bb34b3c5d38a c03a2b8a737cf53dceb0e74e8087f2ca { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02726.RNA-Seq.R2_L002.A C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L002_R2_001.fastq.gz 4733610654 FASTQ R2_L002 unaligned CPTAC3 dfe3363a-8d70-4edb-8497-13655ec491b6 31ed55e930fd55946338d412dfde6291 { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02726.RNA-Seq.R2_L005.T C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 190123_UNC31-K00269_0183_BH3L7LBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 3009425769 FASTQ R2_L005 unaligned CPTAC3 988289b1-78bb-4f8b-8a9f-7aeb9f48f04b e504c92e87fa622170426d94f36c9576 { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor' } -C3N-02726.RNA-Seq.transcriptome.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 692939ee-4d98-4beb-8c2e-2a8a1456fc4e.rna_seq.transcriptome.gdc_realn.bam 9896903808 BAM transcriptome harmonized CPTAC3 f659a063-9541-4852-9ddc-3966c023db55 a80c75767b13658de9310a1d8e94f235 { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02726.RNA-Seq.transcriptome.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 ccfe186b-3888-41d6-9f79-32fccc651505.rna_seq.transcriptome.gdc_realn.bam 6500251161 BAM transcriptome harmonized CPTAC3 d29d1361-5567-4ac4-8b34-4a12bbda9c60 1db51077f9f4fe8888685ccf338c311a { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02726.RNA-Seq.chimeric.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 9ba36f98-de94-4619-8d09-648d9e764bce.rna_seq.chimeric.gdc_realn.bam 34912458 BAM chimeric harmonized CPTAC3 9abb83b3-224d-4e6a-9618-d3373be64669 6977762bde1c0ccde6992d21d5d3ae93 { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02726.RNA-Seq.chimeric.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 9e3969bf-2d21-4f19-89db-c184ea509552.rna_seq.chimeric.gdc_realn.bam 29262918 BAM chimeric harmonized CPTAC3 0ea49e56-f252-4309-89dc-02196946fe18 2570f2f41a80d9a47b580a1baf6f80cc { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02726.RNA-Seq.genomic.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 9ba36f98-de94-4619-8d09-648d9e764bce.rna_seq.genomic.gdc_realn.bam 9620370516 BAM genomic harmonized CPTAC3 2d04ee51-94d8-4e0c-b17a-e81c2479a6ad 9e054acb65623209890b2a44aa438446 { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02726.RNA-Seq.genomic.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 9e3969bf-2d21-4f19-89db-c184ea509552.rna_seq.genomic.gdc_realn.bam 6052356723 BAM genomic harmonized CPTAC3 129a6639-d301-4565-809a-ed69d0deba4f 359c84d8000478ed5fc112c8ff45942a { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor' } +C3N-02726.RNA-Seq.R1_L002.A C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L002_R1_001.fastq.gz 4407306906 FASTQ R1_L002 unaligned CPTAC3 13a1cfba-4d90-4fb7-888d-76e1686d23f6 29fe2c496d2ce1d64a8e5e3bc457d1a3 { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02726.RNA-Seq.R1_L005.T C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 190123_UNC31-K00269_0183_BH3L7LBBXY_TTAGGC_S17_L005_R1_001.fastq.gz 2874892214 FASTQ R1_L005 unaligned CPTAC3 9f265f85-0ddc-4b43-8cb7-bb34b3c5d38a c03a2b8a737cf53dceb0e74e8087f2ca { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02726.RNA-Seq.R2_L002.A C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L002_R2_001.fastq.gz 4733610654 FASTQ R2_L002 unaligned CPTAC3 dfe3363a-8d70-4edb-8497-13655ec491b6 31ed55e930fd55946338d412dfde6291 { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02726.RNA-Seq.R2_L005.T C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 190123_UNC31-K00269_0183_BH3L7LBBXY_TTAGGC_S17_L005_R2_001.fastq.gz 3009425769 FASTQ R2_L005 unaligned CPTAC3 988289b1-78bb-4f8b-8a9f-7aeb9f48f04b e504c92e87fa622170426d94f36c9576 { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02726.RNA-Seq.transcriptome.A.hg38 C3N-02726 CCRCC RNA-Seq tissue_normal CPT0176430009 9ba36f98-de94-4619-8d09-648d9e764bce.rna_seq.transcriptome.gdc_realn.bam 11323050005 BAM transcriptome harmonized CPTAC3 e0227ae9-7658-49db-9ae1-d4392232989f 3d5132bc4ac5d5e3b1f360f2bde301d1 { 'aliquot_tag': 'ALQ_c344f7cf', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02726.RNA-Seq.transcriptome.T.hg38 C3N-02726 CCRCC RNA-Seq tumor CPT0176400009 9e3969bf-2d21-4f19-89db-c184ea509552.rna_seq.transcriptome.gdc_realn.bam 7388711096 BAM transcriptome harmonized CPTAC3 75403d9b-0e21-4dce-b8a4-240bdc801063 2af9ac0953f92eb062d2632d029cd28a { 'aliquot_tag': 'ALQ_84e48d1f', 'gdc_sample_type': 'Primary Tumor' } C3N-02726.WGS.N C3N-02726 CCRCC WGS blood_normal CPT0176520002 CPT0176520002.WholeGenome.RP-1303.bam 52013834859 BAM aligned CPTAC3 120abf71-ed9a-4963-abc0-9e8eb02663ab e2a2792b4be9aee2cce10e78155723ae { 'aliquot_tag': 'ALQ_a2aad452', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02726.WGS.N.hg38 C3N-02726 CCRCC WGS blood_normal CPT0176520002 686b4ba1-7506-4db8-b6dd-0596d99f6193_wgs_gdc_realn.bam 74975219505 BAM harmonized CPTAC3 958ba445-a554-433b-ade6-b30f4bb2298f bbb94aac8fe80b73d8e1fb55036ff367 { 'aliquot_tag': 'ALQ_a2aad452', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02726.WGS.T C3N-02726 CCRCC WGS tumor CPT0176400006 CPT0176400006.WholeGenome.RP-1303.bam 108715168377 BAM aligned CPTAC3 e6f807c8-7747-40c7-9629-5d93b42aa102 aaeef6ffd817630354a087863d665bc6 { 'aliquot_tag': 'ALQ_145b908e', 'gdc_sample_type': 'Primary Tumor' } @@ -32571,8 +34773,8 @@ C3N-02727.REP_9967ddb5.miRNA-Seq.T C3N-02727 HNSCC miRNA-Seq tumor CPT0177710009 C3N-02727.REP_9967ddb5.miRNA-Seq.T.hg38 C3N-02727 HNSCC miRNA-Seq tumor CPT0177710009 10f0a2e5-7710-4060-a206-04462e45d8d8_mirnaseq_gdc_realn.bam 191095951 BAM harmonized CPTAC3 a6ab3cf3-fac1-4542-8c18-b83f04ae626e b4cc688698a08aa430be421484537a6d { 'aliquot_tag': 'REP_9967ddb5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-02727.REP_9967ddb5.RNA-Seq.chimeric.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 eb6d765d-210d-48e9-a0d5-4f4f1ac9389f.rna_seq.chimeric.gdc_realn.bam 33869587 BAM chimeric harmonized CPTAC3 719fe3c9-b4b3-4b2f-ae64-cd3f51d5a4bd b1d0ebfa42d6099f06df79ec69000158 { 'aliquot_tag': 'REP_9967ddb5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-02727.REP_9967ddb5.RNA-Seq.genomic.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 eb6d765d-210d-48e9-a0d5-4f4f1ac9389f.rna_seq.genomic.gdc_realn.bam 8718704263 BAM genomic harmonized CPTAC3 cbed9719-64dd-4c31-9cf2-1a94f4f8fd00 789871d3316658a7eb32b373a6dc6bab { 'aliquot_tag': 'REP_9967ddb5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-02727.REP_9967ddb5.RNA-Seq.R1_L004.T C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 190621_UNC32-K00270_0185_BH7G72BBXY_ACTCGTGT-ATTGGAAC_S16_L004_R1_001.fastq.gz 4186447836 FASTQ R1_L004 unaligned CPTAC3 06bcb46c-5165-49cf-aaa8-e1cd7bc0e156 a82551d276c0b7d38ffcef43434fae0d { 'aliquot_tag': 'REP_9967ddb5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-02727.REP_9967ddb5.RNA-Seq.R2_L004.T C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 190621_UNC32-K00270_0185_BH7G72BBXY_ACTCGTGT-ATTGGAAC_S16_L004_R2_001.fastq.gz 4554988535 FASTQ R2_L004 unaligned CPTAC3 54804c92-509a-48fc-9a92-ab8b5376ce66 02b55cf1cc56654a482ef4612e37e9a1 { 'aliquot_tag': 'REP_9967ddb5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3N-02727.REP_9967ddb5.RNA-Seq.R1_L004.T C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 190621_UNC32-K00270_0185_BH7G72BBXY_ACTCGTGT-ATTGGAAC_S16_L004_R1_001.fastq.gz 4186447836 FASTQ R1_L004 unaligned CPTAC3 06bcb46c-5165-49cf-aaa8-e1cd7bc0e156 a82551d276c0b7d38ffcef43434fae0d { 'aliquot_tag': 'REP_9967ddb5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R1', 'lane': 'L004' } +C3N-02727.REP_9967ddb5.RNA-Seq.R2_L004.T C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 190621_UNC32-K00270_0185_BH7G72BBXY_ACTCGTGT-ATTGGAAC_S16_L004_R2_001.fastq.gz 4554988535 FASTQ R2_L004 unaligned CPTAC3 54804c92-509a-48fc-9a92-ab8b5376ce66 02b55cf1cc56654a482ef4612e37e9a1 { 'aliquot_tag': 'REP_9967ddb5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R2', 'lane': 'L004' } C3N-02727.REP_9967ddb5.RNA-Seq.transcriptome.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177710009 eb6d765d-210d-48e9-a0d5-4f4f1ac9389f.rna_seq.transcriptome.gdc_realn.bam 10860838075 BAM transcriptome harmonized CPTAC3 e18c1409-7b68-4628-af87-5906f95eba8e 3245049485e4b69c801569b819e6d4ee { 'aliquot_tag': 'REP_9967ddb5', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-02727.REP_9d8c024.MethArray.Green.T C3N-02727 HNSCC Methylation Array tumor CPT0177710006 203273630261_R05C01_Grn.idat 13676231 IDAT Green NA CPTAC3 892868b5-1d49-440a-b094-587b2c8ef452 65889d0067bd6c8ebeba265b3ce47895 { 'aliquot_tag': 'REP_9d8c024', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } C3N-02727.REP_9d8c024.MethArray.Red.T C3N-02727 HNSCC Methylation Array tumor CPT0177710006 203273630261_R05C01_Red.idat 13676231 IDAT Red NA CPTAC3 8ef49f20-2aec-410a-a36a-dbf8d99788f8 db7e22fc0548e9846c933f8e3705fcab { 'aliquot_tag': 'REP_9d8c024', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } @@ -32581,17 +34783,20 @@ C3N-02727.REP_9d8c024.WGS.T.hg38 C3N-02727 HNSCC WGS tumor CPT0177710006 7d212c5 C3N-02727.REP_9d8c024.WXS.T C3N-02727 HNSCC WXS tumor CPT0177710006 CPT0177710006.WholeExome.RP-1303.bam 24833035485 BAM aligned CPTAC3 3a0f4c9e-a962-48f0-81dd-6837bb2ef128 6c57e5c56ba8c85cee26e38cec66f234 { 'aliquot_tag': 'REP_9d8c024', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } C3N-02727.REP_9d8c024.WXS.T.hg38 C3N-02727 HNSCC WXS tumor CPT0177710006 7d212c59-d44b-4209-baa1-4cc11d663cde_wxs_gdc_realn.bam 34203568393 BAM harmonized CPTAC3 7f254a93-1d05-4de7-81e2-85a5c4218e85 cf7e9ed997a5b8ce99e1e63355833fef { 'aliquot_tag': 'REP_9d8c024', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Distribution - original aliquot failed' } C3N-02727.RNA-Seq.chimeric.A.hg38 C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 7b394a9a-8d54-463c-b021-4d45877f6864.rna_seq.chimeric.gdc_realn.bam 78230818 BAM chimeric harmonized CPTAC3 ac539833-eb29-420e-b8ba-bb8f09645281 a3e2d27c07366c994d0e3bdc2e835928 { 'aliquot_tag': 'ALQ_e3a78ed5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02727.RNA-Seq.chimeric.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 4d0ad197-a619-4fec-9e05-9a0934115c4b.rna_seq.chimeric.gdc_realn.bam 256765935 BAM chimeric harmonized CPTAC3 68d01f56-8aae-4011-98d6-298fbdd587f7 71b79dad3e5a7d289c1e4db76f510199 { 'aliquot_tag': 'ALQ_a407f405', 'gdc_sample_type': 'Primary Tumor' } -C3N-02727.RNA-Seq.genomic.A.hg38 C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 7b394a9a-8d54-463c-b021-4d45877f6864.rna_seq.genomic.gdc_realn.bam 6297858825 BAM genomic harmonized CPTAC3 a832b404-fe24-40bb-b2a9-e8bfd4dbd0c5 14d006aacd75efbd339c77f9afb3b282 { 'aliquot_tag': 'ALQ_e3a78ed5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02727.RNA-Seq.genomic.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 4d0ad197-a619-4fec-9e05-9a0934115c4b.rna_seq.genomic.gdc_realn.bam 8435475390 BAM genomic harmonized CPTAC3 9c3b66f2-0f91-450a-bb65-6f7d9794ef27 e0edef442c17ee3ec55b138212e0f43e { 'aliquot_tag': 'ALQ_a407f405', 'gdc_sample_type': 'Primary Tumor' } -C3N-02727.RNA-Seq.R1_L003.T C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 190215_UNC32-K00270_0147_AH3VGHBBXY_TAGCTT_S11_L003_R1_001.fastq.gz 3866141877 FASTQ R1_L003 unaligned CPTAC3 446b80eb-9e39-45f3-ac5c-cb7c01842aec 7f8934d6d2c834add624b59444ffecb6 { 'aliquot_tag': 'ALQ_a407f405', 'gdc_sample_type': 'Primary Tumor' } -C3N-02727.RNA-Seq.R1_L008.A C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L008_R1_001.fastq.gz 2780571927 FASTQ R1_L008 unaligned CPTAC3 683166fd-ecea-41f8-9eb3-fcb9c6b840c9 b006a4860a900417decb319bdbaccee5 { 'aliquot_tag': 'ALQ_e3a78ed5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02727.RNA-Seq.R1_.T C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 20210723_P2_F6_WB7988-plate2_S66_R1_001.fastq.gz 1987655032 FASTQ R1_ unaligned CPTAC3 d246e913-438e-471d-8398-6acb12ccfc3a 154dcebca10cd67c3541f5cc68e64842 { 'aliquot_tag': 'ALQ_7b27c206', 'gdc_sample_type': 'Primary Tumor' } -C3N-02727.RNA-Seq.R2_L003.T C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 190215_UNC32-K00270_0147_AH3VGHBBXY_TAGCTT_S11_L003_R2_001.fastq.gz 4192346139 FASTQ R2_L003 unaligned CPTAC3 296ca088-9806-4f79-9cae-62bace29aa36 27ff77ec5e06961ca66112ee4dc42676 { 'aliquot_tag': 'ALQ_a407f405', 'gdc_sample_type': 'Primary Tumor' } -C3N-02727.RNA-Seq.R2_L008.A C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L008_R2_001.fastq.gz 2999648177 FASTQ R2_L008 unaligned CPTAC3 19c13f02-2bf0-4c05-b145-17c1b5fa030f dfcea2dcdacfdc6b3a9f174b2ceeba7b { 'aliquot_tag': 'ALQ_e3a78ed5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02727.RNA-Seq.R2_.T C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 20210723_P2_F6_WB7988-plate2_S66_R2_001.fastq.gz 2129472712 FASTQ R2_ unaligned CPTAC3 a788bf2c-28f0-4041-a495-2f6c2ebbd67b b78159363e49302ae1533f3776cd7071 { 'aliquot_tag': 'ALQ_7b27c206', 'gdc_sample_type': 'Primary Tumor' } +C3N-02727.RNA-Seq.chimeric.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 1c049ddb-6dc3-496f-94e9-e8690c7be8ea.rna_seq.chimeric.gdc_realn.bam 256780105 BAM chimeric harmonized CPTAC3 c70980dd-8940-4a59-9ccd-bc6101df387c 872b928e620030a529e5916cfb9e629c { 'aliquot_tag': 'ALQ_a407f405', 'gdc_sample_type': 'Primary Tumor' } +C3N-02727.RNA-Seq.chimeric.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 77cc56f0-b249-4c68-b5b9-5915cb7ba6b7.rna_seq.chimeric.gdc_realn.bam 24682695 BAM chimeric harmonized CPTAC3 c8129d5c-818b-4d8f-b8e0-20c5d813486e 85dc27f1aefcf0c8cc6d0ef8acecebb8 { 'aliquot_tag': 'ALQ_7b27c206', 'gdc_sample_type': 'Primary Tumor' } +C3N-02727.RNA-Seq.genomic.A.hg38 C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 7b394a9a-8d54-463c-b021-4d45877f6864.rna_seq.genomic.gdc_realn.bam 6297858825 BAM genomic harmonized CPTAC3 2288d359-4f22-4ae4-8f57-ad87c53d5afa 14d006aacd75efbd339c77f9afb3b282 { 'aliquot_tag': 'ALQ_e3a78ed5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02727.RNA-Seq.genomic.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 1c049ddb-6dc3-496f-94e9-e8690c7be8ea.rna_seq.genomic.gdc_realn.bam 8437398397 BAM genomic harmonized CPTAC3 db77f422-a7cf-4674-9dc6-6bee23edeb36 88bca8a036c4a3cae97daecf4cdf9291 { 'aliquot_tag': 'ALQ_a407f405', 'gdc_sample_type': 'Primary Tumor' } +C3N-02727.RNA-Seq.genomic.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 77cc56f0-b249-4c68-b5b9-5915cb7ba6b7.rna_seq.genomic.gdc_realn.bam 3736119094 BAM genomic harmonized CPTAC3 5900553f-6bef-46ba-9c87-bf87dae42e07 a54f12b2c46e1cef94b6b2be1b869389 { 'aliquot_tag': 'ALQ_7b27c206', 'gdc_sample_type': 'Primary Tumor' } +C3N-02727.RNA-Seq.R1_L003.T C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 190215_UNC32-K00270_0147_AH3VGHBBXY_TAGCTT_S11_L003_R1_001.fastq.gz 3866141877 FASTQ R1_L003 unaligned CPTAC3 446b80eb-9e39-45f3-ac5c-cb7c01842aec 7f8934d6d2c834add624b59444ffecb6 { 'aliquot_tag': 'ALQ_a407f405', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02727.RNA-Seq.R1_L008.A C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L008_R1_001.fastq.gz 2780571927 FASTQ R1_L008 unaligned CPTAC3 683166fd-ecea-41f8-9eb3-fcb9c6b840c9 b006a4860a900417decb319bdbaccee5 { 'aliquot_tag': 'ALQ_e3a78ed5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-02727.RNA-Seq.R2_L003.T C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 190215_UNC32-K00270_0147_AH3VGHBBXY_TAGCTT_S11_L003_R2_001.fastq.gz 4192346139 FASTQ R2_L003 unaligned CPTAC3 296ca088-9806-4f79-9cae-62bace29aa36 27ff77ec5e06961ca66112ee4dc42676 { 'aliquot_tag': 'ALQ_a407f405', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02727.RNA-Seq.R2_L008.A C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L008_R2_001.fastq.gz 2999648177 FASTQ R2_L008 unaligned CPTAC3 19c13f02-2bf0-4c05-b145-17c1b5fa030f dfcea2dcdacfdc6b3a9f174b2ceeba7b { 'aliquot_tag': 'ALQ_e3a78ed5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-02727.RNA-Seq.T C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 20210723_P2_F6_WB7988-plate2_S66_R1_001.fastq.gz 1987655032 FASTQ unaligned CPTAC3 d246e913-438e-471d-8398-6acb12ccfc3a 154dcebca10cd67c3541f5cc68e64842 +C3N-02727.RNA-Seq.T C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 20210723_P2_F6_WB7988-plate2_S66_R2_001.fastq.gz 2129472712 FASTQ unaligned CPTAC3 a788bf2c-28f0-4041-a495-2f6c2ebbd67b b78159363e49302ae1533f3776cd7071 C3N-02727.RNA-Seq.transcriptome.A.hg38 C3N-02727 HNSCC RNA-Seq tissue_normal CPT0177730009 7b394a9a-8d54-463c-b021-4d45877f6864.rna_seq.transcriptome.gdc_realn.bam 8510397771 BAM transcriptome harmonized CPTAC3 5bcd38b5-9bbe-4b2f-bdee-31e768c61431 705a2df3aa93404c261ab2bccb63dfbd { 'aliquot_tag': 'ALQ_e3a78ed5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02727.RNA-Seq.transcriptome.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 4d0ad197-a619-4fec-9e05-9a0934115c4b.rna_seq.transcriptome.gdc_realn.bam 8851504992 BAM transcriptome harmonized CPTAC3 47ce918f-1cf9-40b8-823e-86a62f856abe 816c79b88bfc0e435d1127a645f18786 { 'aliquot_tag': 'ALQ_a407f405', 'gdc_sample_type': 'Primary Tumor' } +C3N-02727.RNA-Seq.transcriptome.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177700009 1c049ddb-6dc3-496f-94e9-e8690c7be8ea.rna_seq.transcriptome.gdc_realn.bam 9798075402 BAM transcriptome harmonized CPTAC3 525ac003-f4f6-4a93-9bc0-6e7c4a7c18eb 5d5cab2c5ead0fe182d1de0bd943163f { 'aliquot_tag': 'ALQ_a407f405', 'gdc_sample_type': 'Primary Tumor' } +C3N-02727.RNA-Seq.transcriptome.T.hg38 C3N-02727 HNSCC RNA-Seq tumor CPT0177750011 77cc56f0-b249-4c68-b5b9-5915cb7ba6b7.rna_seq.transcriptome.gdc_realn.bam 2239670732 BAM transcriptome harmonized CPTAC3 c6a11ae0-60a4-4703-9335-0cb29cc2dedd cf19cc2d3dc6f60b9d15a08127818d35 { 'aliquot_tag': 'ALQ_7b27c206', 'gdc_sample_type': 'Primary Tumor' } C3N-02727.WGS.N C3N-02727 HNSCC WGS blood_normal CPT0177820002 CPT0177820002.WholeGenome.RP-1303.bam 65291598979 BAM aligned CPTAC3 53d35c55-274d-4b75-97ee-90d349df4a51 b6118756ad07057051ccf999a3d11559 { 'aliquot_tag': 'ALQ_b843cc38', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02727.WGS.N.hg38 C3N-02727 HNSCC WGS blood_normal CPT0177820002 e4e0a7a8-7b08-4410-85c6-b9bf8e6741ad_wgs_gdc_realn.bam 96179092735 BAM harmonized CPTAC3 534a92c0-65c8-4e42-a3bb-b673c4c0c952 a0b1049cb5497da327de4b35b0f30c7d { 'aliquot_tag': 'ALQ_b843cc38', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02727.WXS.A C3N-02727 HNSCC WXS tissue_normal CPT0177730006 CPT0177730006.WholeExome.RP-1303.bam 45036632991 BAM aligned CPTAC3 cb63efb7-a3b1-457a-8e58-3875466072b6 2e9edd006076f15a546a6586d50270fe { 'aliquot_tag': 'ALQ_73189344', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -32608,16 +34813,16 @@ C3N-02728.miRNA-Seq.A C3N-02728 LUAD miRNA-Seq tissue_normal CPT0178990009 19013 C3N-02728.miRNA-Seq.A.hg38 C3N-02728 LUAD miRNA-Seq tissue_normal CPT0178990009 f87afed6-2bca-4201-b0b4-b78db1e6cac1_mirnaseq_gdc_realn.bam 292988204 BAM harmonized CPTAC3 aa65cd45-6f62-4020-84df-a69178551345 46958f80b16508fa9e705adb738dc3c7 { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02728.miRNA-Seq.T C3N-02728 LUAD miRNA-Seq tumor CPT0178980009 190130_UNC31-K00269_0188_BH2FGCBBXY_TATAAT_S44_L007_R1_001.unaln.bam 241009318 BAM unaligned CPTAC3 0a48cc93-2a3d-4bae-af7f-cccce2caedf4 8e564d88090a01d3c11d60e39b131f50 { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor' } C3N-02728.miRNA-Seq.T.hg38 C3N-02728 LUAD miRNA-Seq tumor CPT0178980009 29dde79f-ad8f-4cfa-92ad-da7d3075e150_mirnaseq_gdc_realn.bam 260535843 BAM harmonized CPTAC3 75b5d14c-d0ab-4a80-a218-6f5d74130a38 074b079ecedb4cb72d42f32e74b3f602 { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02728.RNA-Seq.chimeric.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 99429c27-3696-4162-861f-6564c0f4556d.rna_seq.chimeric.gdc_realn.bam 485353703 BAM chimeric harmonized CPTAC3 b2d94933-8365-4ef4-a727-5b1d51996f83 a12b749967b7f2ab8ecaf0bc5fa17a8d { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02728.RNA-Seq.chimeric.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 04c199be-292e-4d69-99eb-61cf4a7996a9.rna_seq.chimeric.gdc_realn.bam 47637306 BAM chimeric harmonized CPTAC3 40e45822-1c70-4fc7-afba-5a7aa516af59 50fdfbb6d6a2058ec166e36ae0714b4b { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02728.RNA-Seq.genomic.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 99429c27-3696-4162-861f-6564c0f4556d.rna_seq.genomic.gdc_realn.bam 8873918079 BAM genomic harmonized CPTAC3 5113c071-abef-44d2-a972-3c3d28ffd2cc 9d6d1c3f103574778816b87f170bd828 { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02728.RNA-Seq.genomic.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 04c199be-292e-4d69-99eb-61cf4a7996a9.rna_seq.genomic.gdc_realn.bam 8342364177 BAM genomic harmonized CPTAC3 e2078f67-5f08-4ede-97b8-cc8626bfa18e 0a0b4d004746a089f816391d362d19f0 { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02728.RNA-Seq.R1_L001.T C3N-02728 LUAD RNA-Seq tumor CPT0178980009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3811397785 FASTQ R1_L001 unaligned CPTAC3 b20387d6-e4c1-4305-ad92-9e379b8c9d64 0d9ca149be8f463ed1146aaf2c633b88 { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02728.RNA-Seq.R1_L003.A C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L003_R1_001.fastq.gz 3857907449 FASTQ R1_L003 unaligned CPTAC3 e1b82508-062d-403f-bb0b-478f4981c22c a6b8611b2ce9c1782d7fbda8ed7bec50 { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02728.RNA-Seq.R2_L001.T C3N-02728 LUAD RNA-Seq tumor CPT0178980009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L001_R2_001.fastq.gz 4356572921 FASTQ R2_L001 unaligned CPTAC3 20ee9b1a-a9fb-4c6a-8030-69eac3cd032a 243ef5e9271cec49bb6fd24e7e7e7ff4 { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02728.RNA-Seq.R2_L003.A C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L003_R2_001.fastq.gz 4248997114 FASTQ R2_L003 unaligned CPTAC3 41014d3e-cd79-4d85-b627-b2e95da7f494 2186ddaa2a02a9addfa4ebc73c95b998 { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02728.RNA-Seq.transcriptome.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 99429c27-3696-4162-861f-6564c0f4556d.rna_seq.transcriptome.gdc_realn.bam 7858153211 BAM transcriptome harmonized CPTAC3 f4e40e3d-0af4-4248-a64a-b7c448fa580c a9b20beb01cc83f5ca2684c356c65561 { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02728.RNA-Seq.transcriptome.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 04c199be-292e-4d69-99eb-61cf4a7996a9.rna_seq.transcriptome.gdc_realn.bam 6701391008 BAM transcriptome harmonized CPTAC3 9f5cc427-47e6-464a-9532-e26ec763ca5b b6b0182884b162c6377ac3bff9938cbc { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02728.RNA-Seq.chimeric.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 d0fff5d6-218b-43ca-9baf-f7a783970cd2.rna_seq.chimeric.gdc_realn.bam 485300665 BAM chimeric harmonized CPTAC3 f30449d6-fc12-4ec1-afcb-877261056594 19917bcbfb2bb9a6379a7ca6df9aae89 { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02728.RNA-Seq.chimeric.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 7cd1846f-6c75-405f-8cf2-ddc03a4e54b2.rna_seq.chimeric.gdc_realn.bam 47627938 BAM chimeric harmonized CPTAC3 9514d3c2-1d81-4475-97ce-b643e8da05d6 5dd7760a4f9593016f1a63f9a62f0084 { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02728.RNA-Seq.genomic.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 d0fff5d6-218b-43ca-9baf-f7a783970cd2.rna_seq.genomic.gdc_realn.bam 8874175553 BAM genomic harmonized CPTAC3 526c5caf-56c9-4051-b6d6-b93cab1fdcfa 3fcfcea38fcb8822342bf9726857bcbf { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02728.RNA-Seq.genomic.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 7cd1846f-6c75-405f-8cf2-ddc03a4e54b2.rna_seq.genomic.gdc_realn.bam 8343152705 BAM genomic harmonized CPTAC3 7f3e03c5-2de2-4460-b457-280ed810613d 2850ff07fbf9a7838918ec05c1b423f3 { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02728.RNA-Seq.R1_L001.T C3N-02728 LUAD RNA-Seq tumor CPT0178980009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3811397785 FASTQ R1_L001 unaligned CPTAC3 b20387d6-e4c1-4305-ad92-9e379b8c9d64 0d9ca149be8f463ed1146aaf2c633b88 { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02728.RNA-Seq.R1_L003.A C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L003_R1_001.fastq.gz 3857907449 FASTQ R1_L003 unaligned CPTAC3 e1b82508-062d-403f-bb0b-478f4981c22c a6b8611b2ce9c1782d7fbda8ed7bec50 { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02728.RNA-Seq.R2_L001.T C3N-02728 LUAD RNA-Seq tumor CPT0178980009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTTTCG_S4_L001_R2_001.fastq.gz 4356572921 FASTQ R2_L001 unaligned CPTAC3 20ee9b1a-a9fb-4c6a-8030-69eac3cd032a 243ef5e9271cec49bb6fd24e7e7e7ff4 { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02728.RNA-Seq.R2_L003.A C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 190201_UNC31-K00269_0189_AH3L7FBBXY_AGTTCC_S11_L003_R2_001.fastq.gz 4248997114 FASTQ R2_L003 unaligned CPTAC3 41014d3e-cd79-4d85-b627-b2e95da7f494 2186ddaa2a02a9addfa4ebc73c95b998 { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02728.RNA-Seq.transcriptome.A.hg38 C3N-02728 LUAD RNA-Seq tissue_normal CPT0178990009 d0fff5d6-218b-43ca-9baf-f7a783970cd2.rna_seq.transcriptome.gdc_realn.bam 8895799505 BAM transcriptome harmonized CPTAC3 28e10b09-caca-4905-8e3c-2c2dcdd845db ec91d95e416e5a8b49812c44c3b0dc03 { 'aliquot_tag': 'ALQ_655587ed', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02728.RNA-Seq.transcriptome.T.hg38 C3N-02728 LUAD RNA-Seq tumor CPT0178980009 7cd1846f-6c75-405f-8cf2-ddc03a4e54b2.rna_seq.transcriptome.gdc_realn.bam 7586485999 BAM transcriptome harmonized CPTAC3 7023aad6-f896-46c7-9c2d-729781472fc5 4f4f705fddc5fd1266448181de271b6d { 'aliquot_tag': 'ALQ_5835ae5d', 'gdc_sample_type': 'Primary Tumor' } C3N-02728.WGS.N C3N-02728 LUAD WGS blood_normal CPT0179080002 CPT0179080002.WholeGenome.RP-1303.bam 109676169284 BAM aligned CPTAC3 0674c28c-bee8-4550-ba5f-6494ef38ce3f 1abdb24fae5d944a0b90d992aafe0ad9 { 'aliquot_tag': 'ALQ_4e9f2da9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02728.WGS.N.hg38 C3N-02728 LUAD WGS blood_normal CPT0179080002 dc701198-9ba3-4d3a-8bdd-237021bb43d7_wgs_gdc_realn.bam 158022893434 BAM harmonized CPTAC3 46a1e8bc-fefa-482a-9ad3-99c3befb6798 fa7c4226941c1725d10cab07fd828b26 { 'aliquot_tag': 'ALQ_4e9f2da9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02728.WGS.T C3N-02728 LUAD WGS tumor CPT0178980006 CPT0178980006.WholeGenome.RP-1303.bam 120412839562 BAM aligned CPTAC3 f73af00b-b882-4572-a745-3bfb8331a770 48024d63753ad4c90c47eeb357ee6a4b { 'aliquot_tag': 'ALQ_c88ab3cc', 'gdc_sample_type': 'Primary Tumor' } @@ -32638,12 +34843,12 @@ C3N-02729.miRNA-Seq.T C3N-02729 LUAD miRNA-Seq tumor CPT0148280007 181108_UNC31- C3N-02729.miRNA-Seq.T.hg38 C3N-02729 LUAD miRNA-Seq tumor CPT0148280007 a3d87bf5-533b-47c1-9cd6-c30c24e04272_mirnaseq_gdc_realn.bam 263862892 BAM harmonized CPTAC3 cd03edc3-0e6d-4f95-be77-d24439da9980 3539da697311f08db77c7bdfcac23e1e { 'aliquot_tag': 'ALQ_5bc5747a', 'gdc_sample_type': 'Primary Tumor' } C3N-02729.RNA-Seq.chimeric.A.hg38 C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 6819c7ed-6f9f-44d4-9cf1-da669c5e60ff.rna_seq.chimeric.gdc_realn.bam 116434645 BAM chimeric harmonized CPTAC3 2ac7b213-5ba3-4fc5-8a8c-282a2cfe0910 64cc51ead322a81ab473053189da8efd { 'aliquot_tag': 'ALQ_d7eedc88', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02729.RNA-Seq.chimeric.T.hg38 C3N-02729 LUAD RNA-Seq tumor CPT0148280007 48444fab-3c39-466c-80f7-26c27b8f9958.rna_seq.chimeric.gdc_realn.bam 42366246 BAM chimeric harmonized CPTAC3 b91fa9a9-f5fb-413c-91a5-2ac1ee99988e e4594fa7e705ca6cbf3250cd5b94d8af { 'aliquot_tag': 'ALQ_5bc5747a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02729.RNA-Seq.genomic.A.hg38 C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 6819c7ed-6f9f-44d4-9cf1-da669c5e60ff.rna_seq.genomic.gdc_realn.bam 9940331865 BAM genomic harmonized CPTAC3 c9ab5985-8ed9-47e0-a62f-8450c79391c0 ba20b22048733250466d2093c7ecbdb8 { 'aliquot_tag': 'ALQ_d7eedc88', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02729.RNA-Seq.genomic.A.hg38 C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 6819c7ed-6f9f-44d4-9cf1-da669c5e60ff.rna_seq.genomic.gdc_realn.bam 9940331865 BAM genomic harmonized CPTAC3 65ecc3ce-ccbe-4d94-93ec-8dc9631ec1d0 ba20b22048733250466d2093c7ecbdb8 { 'aliquot_tag': 'ALQ_d7eedc88', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02729.RNA-Seq.genomic.T.hg38 C3N-02729 LUAD RNA-Seq tumor CPT0148280007 48444fab-3c39-466c-80f7-26c27b8f9958.rna_seq.genomic.gdc_realn.bam 9776086786 BAM genomic harmonized CPTAC3 8cf805f8-dcba-47db-aa9c-f11547f07137 eb3916c9a67c0291818a8f3a50ab92da { 'aliquot_tag': 'ALQ_5bc5747a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02729.RNA-Seq.R1_L001.A C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L001_R1_001.fastq.gz 4709708927 FASTQ R1_L001 unaligned CPTAC3 32fae9bd-f322-43cf-b966-7f945f6d815c bc0ac5880605ed51ce01cb15309b2a05 { 'aliquot_tag': 'ALQ_d7eedc88', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02729.RNA-Seq.R1_L005.T C3N-02729 LUAD RNA-Seq tumor CPT0148280007 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTGAT_S18_L005_R1_001.fastq.gz 4618954572 FASTQ R1_L005 unaligned CPTAC3 21a4e2e2-229b-4fb0-b98b-68415b48b5bf fd2984c8ec1b5d44e73fe8a7e56e1e77 { 'aliquot_tag': 'ALQ_5bc5747a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02729.RNA-Seq.R2_L001.A C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L001_R2_001.fastq.gz 5253045233 FASTQ R2_L001 unaligned CPTAC3 2de00116-b2fe-422f-a628-c413cdd293c8 2d8dd9f424c045701554a99465790add { 'aliquot_tag': 'ALQ_d7eedc88', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02729.RNA-Seq.R2_L005.T C3N-02729 LUAD RNA-Seq tumor CPT0148280007 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTGAT_S18_L005_R2_001.fastq.gz 4871544234 FASTQ R2_L005 unaligned CPTAC3 4f7cda8b-0750-471e-b10f-a3beb7cf8511 1850a521aac0c3f8da2e5fc5ea258866 { 'aliquot_tag': 'ALQ_5bc5747a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02729.RNA-Seq.R1_L001.A C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L001_R1_001.fastq.gz 4709708927 FASTQ R1_L001 unaligned CPTAC3 32fae9bd-f322-43cf-b966-7f945f6d815c bc0ac5880605ed51ce01cb15309b2a05 { 'aliquot_tag': 'ALQ_d7eedc88', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-02729.RNA-Seq.R1_L005.T C3N-02729 LUAD RNA-Seq tumor CPT0148280007 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTGAT_S18_L005_R1_001.fastq.gz 4618954572 FASTQ R1_L005 unaligned CPTAC3 21a4e2e2-229b-4fb0-b98b-68415b48b5bf fd2984c8ec1b5d44e73fe8a7e56e1e77 { 'aliquot_tag': 'ALQ_5bc5747a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02729.RNA-Seq.R2_L001.A C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 180508_UNC31-K00269_0128_BHTY7KBBXX_GCCAAT_S3_L001_R2_001.fastq.gz 5253045233 FASTQ R2_L001 unaligned CPTAC3 2de00116-b2fe-422f-a628-c413cdd293c8 2d8dd9f424c045701554a99465790add { 'aliquot_tag': 'ALQ_d7eedc88', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-02729.RNA-Seq.R2_L005.T C3N-02729 LUAD RNA-Seq tumor CPT0148280007 180502_UNC32-K00270_0094_BHTVLMBBXX_ACTGAT_S18_L005_R2_001.fastq.gz 4871544234 FASTQ R2_L005 unaligned CPTAC3 4f7cda8b-0750-471e-b10f-a3beb7cf8511 1850a521aac0c3f8da2e5fc5ea258866 { 'aliquot_tag': 'ALQ_5bc5747a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-02729.RNA-Seq.transcriptome.A.hg38 C3N-02729 LUAD RNA-Seq tissue_normal CPT0148300006 6819c7ed-6f9f-44d4-9cf1-da669c5e60ff.rna_seq.transcriptome.gdc_realn.bam 11605260004 BAM transcriptome harmonized CPTAC3 98761d74-1ebc-4b3f-90e2-8b2a4ee594ac a895bc68b7fe7df8de94533098536de9 { 'aliquot_tag': 'ALQ_d7eedc88', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02729.RNA-Seq.transcriptome.T.hg38 C3N-02729 LUAD RNA-Seq tumor CPT0148280007 48444fab-3c39-466c-80f7-26c27b8f9958.rna_seq.transcriptome.gdc_realn.bam 12001530207 BAM transcriptome harmonized CPTAC3 cda27bd7-0603-4234-8554-440056164573 781c92364bcee85eef1d60f2f8b15ec1 { 'aliquot_tag': 'ALQ_5bc5747a', 'gdc_sample_type': 'Primary Tumor' } C3N-02729.WGS.A C3N-02729 LUAD WGS tissue_normal CPT0148300009 CPT0148300009.WholeGenome.RP-1303.bam 58815479840 BAM aligned CPTAC3 4e70ab4b-6e2c-4b8e-9d37-531c06d045da a8c8b348a1fa3a9db25dba508a854351 { 'aliquot_tag': 'ALQ_4751c119', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -32663,9 +34868,9 @@ C3N-02730.MethArray.Red.T C3N-02730 HNSCC Methylation Array tumor CPT0207870007 C3N-02730.miRNA-Seq.T C3N-02730 HNSCC miRNA-Seq tumor CPT0207870010 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L003_R1_001.unaln.bam 246676588 BAM unaligned CPTAC3 f30694c8-f9ff-40f9-b0d2-1c05b81ddeac 0a99e2e461d2b2af668e598195fae4d2 { 'aliquot_tag': 'ALQ_b4fe26f9', 'gdc_sample_type': 'Primary Tumor' } C3N-02730.miRNA-Seq.T.hg38 C3N-02730 HNSCC miRNA-Seq tumor CPT0207870010 486b5628-2ec1-4232-b9e9-3ad21e3d6efd_mirnaseq_gdc_realn.bam 272887972 BAM harmonized CPTAC3 21819938-2e92-415c-a2a6-0d534bc4cf39 d260551694bf48f5d1aba0c781a5086d { 'aliquot_tag': 'ALQ_b4fe26f9', 'gdc_sample_type': 'Primary Tumor' } C3N-02730.RNA-Seq.chimeric.T.hg38 C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 e81c43a4-4b5a-49ac-8383-63bea61f2e0e.rna_seq.chimeric.gdc_realn.bam 336773960 BAM chimeric harmonized CPTAC3 9a6650b7-56d9-44b8-882f-e568ea470fa5 e4deb7582aa8d0295ea477f1d4d6c868 { 'aliquot_tag': 'ALQ_b4fe26f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02730.RNA-Seq.genomic.T.hg38 C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 e81c43a4-4b5a-49ac-8383-63bea61f2e0e.rna_seq.genomic.gdc_realn.bam 8924912052 BAM genomic harmonized CPTAC3 d7d9ab11-ae79-4c48-be3b-854360af9b13 6845ff44804cdccca8f3d3707ba49e48 { 'aliquot_tag': 'ALQ_b4fe26f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02730.RNA-Seq.R1_L008.T C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L008_R1_001.fastq.gz 3945936473 FASTQ R1_L008 unaligned CPTAC3 0a9da540-489a-45dd-919c-e7962460dc8b 8609f8789cf05ba11188d015ae523a83 { 'aliquot_tag': 'ALQ_b4fe26f9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02730.RNA-Seq.R2_L008.T C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L008_R2_001.fastq.gz 4699034398 FASTQ R2_L008 unaligned CPTAC3 0ee7c388-3057-4e07-afb9-84ece3aaea54 a0c9bd7b8a208cbd6318434a4a39160c { 'aliquot_tag': 'ALQ_b4fe26f9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02730.RNA-Seq.genomic.T.hg38 C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 e81c43a4-4b5a-49ac-8383-63bea61f2e0e.rna_seq.genomic.gdc_realn.bam 8924912052 BAM genomic harmonized CPTAC3 d59ba3a5-9501-4242-8e4e-a5aafadb97b7 6845ff44804cdccca8f3d3707ba49e48 { 'aliquot_tag': 'ALQ_b4fe26f9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02730.RNA-Seq.R1_L008.T C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L008_R1_001.fastq.gz 3945936473 FASTQ R1_L008 unaligned CPTAC3 0a9da540-489a-45dd-919c-e7962460dc8b 8609f8789cf05ba11188d015ae523a83 { 'aliquot_tag': 'ALQ_b4fe26f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02730.RNA-Seq.R2_L008.T C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L008_R2_001.fastq.gz 4699034398 FASTQ R2_L008 unaligned CPTAC3 0ee7c388-3057-4e07-afb9-84ece3aaea54 a0c9bd7b8a208cbd6318434a4a39160c { 'aliquot_tag': 'ALQ_b4fe26f9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02730.RNA-Seq.transcriptome.T.hg38 C3N-02730 HNSCC RNA-Seq tumor CPT0207870010 e81c43a4-4b5a-49ac-8383-63bea61f2e0e.rna_seq.transcriptome.gdc_realn.bam 11543110949 BAM transcriptome harmonized CPTAC3 9fd9cd27-44f9-4df7-9162-fbe2d9143f39 b6c53d25ea16e65a5de0fdc7d798e942 { 'aliquot_tag': 'ALQ_b4fe26f9', 'gdc_sample_type': 'Primary Tumor' } C3N-02730.WGS.N C3N-02730 HNSCC WGS blood_normal CPT0207930002 CPT0207930002.WholeGenome.RP-1303.bam 76274780633 BAM aligned CPTAC3 80fc096b-71a5-41cb-80f4-8f5c6273e800 77072bd20dd05c052aaf18551b29103a { 'aliquot_tag': 'ALQ_7d3703f1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02730.WGS.N.hg38 C3N-02730 HNSCC WGS blood_normal CPT0207930002 94f56b2c-3b64-4b92-b36c-8e095ce5d28d_wgs_gdc_realn.bam 114074944161 BAM harmonized CPTAC3 7256b713-103f-435d-8f1c-9910aa083afd 9a24efc063f12facea5e8d5388dd3732 { 'aliquot_tag': 'ALQ_7d3703f1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -32675,25 +34880,34 @@ C3N-02730.WXS.N C3N-02730 HNSCC WXS blood_normal CPT0207930002 CPT0207930002.Who C3N-02730.WXS.N.hg38 C3N-02730 HNSCC WXS blood_normal CPT0207930002 94f56b2c-3b64-4b92-b36c-8e095ce5d28d_wxs_gdc_realn.bam 57911338150 BAM harmonized CPTAC3 100e34c1-170c-4dbd-ad63-de812aa9378a 0da7c8abf72b6c66541fe31f241fc67c { 'aliquot_tag': 'ALQ_7d3703f1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02730.WXS.T C3N-02730 HNSCC WXS tumor CPT0207870007 CPT0207870007.WholeExome.RP-1303.bam 23614581238 BAM aligned CPTAC3 5767071e-3ec2-4107-ac66-a48505dcaeff 31fa7ce20515ffc1471e59cfcaa0057c { 'aliquot_tag': 'ALQ_3381821b', 'gdc_sample_type': 'Primary Tumor' } C3N-02730.WXS.T.hg38 C3N-02730 HNSCC WXS tumor CPT0207870007 ac6a9fd3-ca87-4867-94ab-03056f12936a_wxs_gdc_realn.bam 32180334608 BAM harmonized CPTAC3 fb95b973-712c-4c79-ac6e-670018f48c16 e07b8af40a787dcb3cc099ff16358677 { 'aliquot_tag': 'ALQ_3381821b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02754.ANN_7b2645c2.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 73d8b0ea-db74-4c3e-87bb-7c0f0bd713d1.rna_seq.chimeric.gdc_realn.bam 261018696 BAM chimeric harmonized CPTAC3 c97c63fa-0001-4046-b601-6b91f18af089 5f1e5285c7e1691828db64a462d46d9b { 'aliquot_tag': 'ANN_7b2645c2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02754.ANN_7b2645c2.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 73d8b0ea-db74-4c3e-87bb-7c0f0bd713d1.rna_seq.genomic.gdc_realn.bam 11301610832 BAM genomic harmonized CPTAC3 ffa9587f-0d4e-4feb-afd6-88ab8955b8ce 32594a64fc605fb9e624bf754fbc39ae { 'aliquot_tag': 'ANN_7b2645c2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02754.ANN_7b2645c2.RNA-Seq.R1_L006.T C3N-02754 PDA RNA-Seq tumor CPT0183850033 200807_UNC32-K00270_0255_AHHY2WBBXY_AGTACTCC-AACCTGTT_S4_L006_R1_001.fastq.gz 3957470951 FASTQ R1_L006 unaligned CPTAC3 03aaf392-5fdd-4d5e-ad97-60c83afddd7f 905a737a0d4d2fb79fdc648c0bc26d46 { 'aliquot_tag': 'ANN_7b2645c2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02754.ANN_7b2645c2.RNA-Seq.R2_L006.T C3N-02754 PDA RNA-Seq tumor CPT0183850033 200807_UNC32-K00270_0255_AHHY2WBBXY_AGTACTCC-AACCTGTT_S4_L006_R2_001.fastq.gz 4464592514 FASTQ R2_L006 unaligned CPTAC3 821f4055-a8c6-4d89-8d28-0ef2b9a4f43d 74dfd9a890230ab233863336a92962c5 { 'aliquot_tag': 'ANN_7b2645c2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02754.ANN_7b2645c2.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 73d8b0ea-db74-4c3e-87bb-7c0f0bd713d1.rna_seq.transcriptome.gdc_realn.bam 9405451914 BAM transcriptome harmonized CPTAC3 0dbc9141-59e9-4db1-8985-6bf07a271043 6142bda166c54efa46017595c0d4b326 { 'aliquot_tag': 'ANN_7b2645c2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02754.ANN_7b2645c2.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 a51e93e3-a568-4a99-9e95-b67b57a21196.rna_seq.chimeric.gdc_realn.bam 261064318 BAM chimeric harmonized CPTAC3 679c02d9-ec7d-4edb-a20b-4c9df8a759a8 9b86466044f20cf3a171eb3f50b05c94 { 'aliquot_tag': 'ANN_7b2645c2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02754.ANN_7b2645c2.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 a51e93e3-a568-4a99-9e95-b67b57a21196.rna_seq.genomic.gdc_realn.bam 11326125338 BAM genomic harmonized CPTAC3 0c1615e9-4d03-44d1-84ef-eb01cb3524d7 9486731db5072ee9f090c40806fa550b { 'aliquot_tag': 'ANN_7b2645c2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02754.ANN_7b2645c2.RNA-Seq.R1_L006.T C3N-02754 PDA RNA-Seq tumor CPT0183850033 200807_UNC32-K00270_0255_AHHY2WBBXY_AGTACTCC-AACCTGTT_S4_L006_R1_001.fastq.gz 3957470951 FASTQ R1_L006 unaligned CPTAC3 03aaf392-5fdd-4d5e-ad97-60c83afddd7f 905a737a0d4d2fb79fdc648c0bc26d46 { 'aliquot_tag': 'ANN_7b2645c2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L006' } +C3N-02754.ANN_7b2645c2.RNA-Seq.R2_L006.T C3N-02754 PDA RNA-Seq tumor CPT0183850033 200807_UNC32-K00270_0255_AHHY2WBBXY_AGTACTCC-AACCTGTT_S4_L006_R2_001.fastq.gz 4464592514 FASTQ R2_L006 unaligned CPTAC3 821f4055-a8c6-4d89-8d28-0ef2b9a4f43d 74dfd9a890230ab233863336a92962c5 { 'aliquot_tag': 'ANN_7b2645c2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L006' } +C3N-02754.ANN_7b2645c2.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850033 a51e93e3-a568-4a99-9e95-b67b57a21196.rna_seq.transcriptome.gdc_realn.bam 10499728196 BAM transcriptome harmonized CPTAC3 3e2152ac-c577-4e19-8d7a-a2c21ac9caa9 3db743fd2c10a59143dc06daca9a574c { 'aliquot_tag': 'ANN_7b2645c2', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } C3N-02754.DUP_19d053f2.WXS.N C3N-02754 PDA WXS blood_normal CPT0183910002 CPT0183910002.WholeExome.RP-1303.bam 46264227546 BAM aligned CPTAC3 afe77d77-ad47-44cc-8b31-bcb8e10b36d8 73b020fa0490dcc479c05aadbf804b1a { 'aliquot_tag': 'DUP_19d053f2', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02754.DUP_19d053f2.WXS.N.hg38 C3N-02754 PDA WXS blood_normal CPT0183910002 f68d0426-1853-4360-9855-675a07b73fd1_wxs_gdc_realn.bam 63996240523 BAM harmonized CPTAC3 c2310b6d-e8f0-4f16-99d0-2c74edf41bc5 d7952fea90d753f6290efd5828d569cf { 'aliquot_tag': 'DUP_19d053f2', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-02754.DUP_4360e393.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850042 e0349eba-49e3-4f31-b705-32f0f66254f6.rna_seq.chimeric.gdc_realn.bam 565206889 BAM chimeric harmonized CPTAC3 07504c54-b5fc-4e88-8bac-7427e4e6f6fd dde4fe2f23dfa9df751ecbffa334f74e { 'aliquot_tag': 'DUP_4360e393', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02754.DUP_4360e393.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850042 e0349eba-49e3-4f31-b705-32f0f66254f6.rna_seq.genomic.gdc_realn.bam 8030680977 BAM genomic harmonized CPTAC3 e027e760-132c-4c58-b996-cceee4b017ec 41738bc6c17050ff37a68bcae1380087 { 'aliquot_tag': 'DUP_4360e393', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02754.DUP_4360e393.RNA-Seq.R1_L006.T C3N-02754 PDA RNA-Seq tumor CPT0183850042 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGGACTC-GGAAGCAG_S20_L006_R1_001.fastq.gz 3709732207 FASTQ R1_L006 unaligned CPTAC3 02f37a94-0c53-4e40-9295-d1350a36608a 8b6cd00eabedeadebbdd2558cac6c6f8 { 'aliquot_tag': 'DUP_4360e393', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L006' } +C3N-02754.DUP_4360e393.RNA-Seq.R2_L006.T C3N-02754 PDA RNA-Seq tumor CPT0183850042 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGGACTC-GGAAGCAG_S20_L006_R2_001.fastq.gz 3917825948 FASTQ R2_L006 unaligned CPTAC3 108e8b34-73a3-47ee-bd45-11ba0073b59e 72d169513e5e18e5d3991cd483cde375 { 'aliquot_tag': 'DUP_4360e393', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L006' } +C3N-02754.DUP_4360e393.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850042 e0349eba-49e3-4f31-b705-32f0f66254f6.rna_seq.transcriptome.gdc_realn.bam 9751340580 BAM transcriptome harmonized CPTAC3 47d8ead2-800e-405d-b539-fb77042be2e7 b75180faeefee7400f3a2ee959b67a9b { 'aliquot_tag': 'DUP_4360e393', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02754.DUP_718ce22d.RNA-Seq.chimeric.A.hg38 C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 6928c457-682e-4237-ba61-51358700f73e.rna_seq.chimeric.gdc_realn.bam 493706173 BAM chimeric harmonized CPTAC3 1c5db054-a8f6-49d4-b795-79d1401b0650 40da14bd9a7504e537788ab441229178 { 'aliquot_tag': 'DUP_718ce22d', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02754.DUP_718ce22d.RNA-Seq.genomic.A.hg38 C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 6928c457-682e-4237-ba61-51358700f73e.rna_seq.genomic.gdc_realn.bam 9851418426 BAM genomic harmonized CPTAC3 06afa2fb-e3e2-4a6c-888e-b0029f21ff90 4364f3b3b5d84143eed0f597f27ce7bc { 'aliquot_tag': 'DUP_718ce22d', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02754.DUP_718ce22d.RNA-Seq.R1_L004.A C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 220126_UNC32-K00270_0314_AHMVJ7BBXY_TTACAGGA-TGACAAGC_S16_L004_R1_001.fastq.gz 4087946988 FASTQ R1_L004 unaligned CPTAC3 b7ba22fa-f51a-4e7c-805b-9b9ddf71cc60 432b18ea146d45fe07a28632f1ebac78 { 'aliquot_tag': 'DUP_718ce22d', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L004' } +C3N-02754.DUP_718ce22d.RNA-Seq.R2_L004.A C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 220126_UNC32-K00270_0314_AHMVJ7BBXY_TTACAGGA-TGACAAGC_S16_L004_R2_001.fastq.gz 4465191159 FASTQ R2_L004 unaligned CPTAC3 eee114a4-c849-41bc-bc0b-170172f63544 a4246e6fed57e65000f45607bfab5994 { 'aliquot_tag': 'DUP_718ce22d', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L004' } +C3N-02754.DUP_718ce22d.RNA-Seq.transcriptome.A.hg38 C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 6928c457-682e-4237-ba61-51358700f73e.rna_seq.transcriptome.gdc_realn.bam 9558121394 BAM transcriptome harmonized CPTAC3 f4d105f5-0f96-45bb-9752-f5f78fcb5cab 8e13fd22333077e8c6626f77cfb62d49 { 'aliquot_tag': 'DUP_718ce22d', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02754.DUP_7c4b81db.WXS.T C3N-02754 PDA WXS tumor CPT0183850037 CPT0183850037.WholeExome.RP-1303.bam 22401445307 BAM aligned CPTAC3 075bd658-411c-43a1-8511-84071cdd8ddb d2618135af43e21171135997c9e2039a { 'aliquot_tag': 'DUP_7c4b81db', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02754.DUP_7c4b81db.WXS.T.hg38 C3N-02754 PDA WXS tumor CPT0183850037 843d78c3-420d-4bfb-8b5b-5ddcac5ecdf7_wxs_gdc_realn.bam 31661583964 BAM harmonized CPTAC3 a22d0be0-06b9-4d90-9a78-ca9c549017f6 9a9527bb933c961850746648bd2fc2a8 { 'aliquot_tag': 'DUP_7c4b81db', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02754.DUP_9245e0f7.WXS.T C3N-02754 PDA WXS tumor CPT0183850035 CPT0183850035.WholeExome.RP-1303.bam 39693617631 BAM aligned CPTAC3 ffc47d8c-c0bf-47ad-9d9b-3c0ec520f216 1355518509cbc3a0eafbb821842f823e { 'aliquot_tag': 'DUP_9245e0f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02754.DUP_9245e0f7.WXS.T.hg38 C3N-02754 PDA WXS tumor CPT0183850035 ae3d946d-820e-4bb3-a056-c339282f49a5_wxs_gdc_realn.bam 55982343240 BAM harmonized CPTAC3 3f9856b2-b05a-4799-9230-d4507e033e53 58a1d04f976ea08b6d9ab4cf9080563f { 'aliquot_tag': 'DUP_9245e0f7', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02754.DUP_b4cb14d.WXS.T C3N-02754 PDA WXS tumor CPT0183850036 CPT0183850036.WholeExome.RP-1303.bam 28449596643 BAM aligned CPTAC3 b69b6761-e422-450b-923d-79a87678f55e a5427fe6a1e6808067777ffbf250e64c { 'aliquot_tag': 'DUP_b4cb14d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02754.DUP_b4cb14d.WXS.T.hg38 C3N-02754 PDA WXS tumor CPT0183850036 ac4a8e84-c4ae-4b8c-b872-beea3c45fb65_wxs_gdc_realn.bam 38748918776 BAM harmonized CPTAC3 de5a7db9-1fd5-4154-ba79-437029d0a6dd 7745b68bd0e7c2879f109fc324e48360 { 'aliquot_tag': 'DUP_b4cb14d', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3N-02754.RNA-Seq.R1_L004.A C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 220126_UNC32-K00270_0314_AHMVJ7BBXY_TTACAGGA-TGACAAGC_S16_L004_R1_001.fastq.gz 4087946988 FASTQ R1_L004 unaligned CPTAC3 b7ba22fa-f51a-4e7c-805b-9b9ddf71cc60 432b18ea146d45fe07a28632f1ebac78 { 'aliquot_tag': 'ALQ_718ce22d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02754.RNA-Seq.R1_L004.T C3N-02754 PDA RNA-Seq tumor CPT0183850045 220126_UNC32-K00270_0314_AHMVJ7BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R1_001.fastq.gz 3158735118 FASTQ R1_L004 unaligned CPTAC3 0e9f4531-da97-4af8-890e-e08f34f36220 7ac6b445f322c952558f4c678b1560ec { 'aliquot_tag': 'ALQ_dd047630', 'gdc_sample_type': 'Primary Tumor' } -C3N-02754.RNA-Seq.R1_L006.T C3N-02754 PDA RNA-Seq tumor CPT0183850042 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGGACTC-GGAAGCAG_S20_L006_R1_001.fastq.gz 3709732207 FASTQ R1_L006 unaligned CPTAC3 02f37a94-0c53-4e40-9295-d1350a36608a 8b6cd00eabedeadebbdd2558cac6c6f8 { 'aliquot_tag': 'ALQ_4360e393', 'gdc_sample_type': 'Primary Tumor' } -C3N-02754.RNA-Seq.R2_L004.A C3N-02754 PDA RNA-Seq tissue_normal CPT0183870036 220126_UNC32-K00270_0314_AHMVJ7BBXY_TTACAGGA-TGACAAGC_S16_L004_R2_001.fastq.gz 4465191159 FASTQ R2_L004 unaligned CPTAC3 eee114a4-c849-41bc-bc0b-170172f63544 a4246e6fed57e65000f45607bfab5994 { 'aliquot_tag': 'ALQ_718ce22d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02754.RNA-Seq.R2_L004.T C3N-02754 PDA RNA-Seq tumor CPT0183850045 220126_UNC32-K00270_0314_AHMVJ7BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R2_001.fastq.gz 3453435097 FASTQ R2_L004 unaligned CPTAC3 8471959f-8d39-484b-8c4c-d30ef5961985 80058a53dd033a8701b7cc16502089b6 { 'aliquot_tag': 'ALQ_dd047630', 'gdc_sample_type': 'Primary Tumor' } -C3N-02754.RNA-Seq.R2_L006.T C3N-02754 PDA RNA-Seq tumor CPT0183850042 220114_UNC32-K00270_0310_AHMWT5BBXY_TTGGACTC-GGAAGCAG_S20_L006_R2_001.fastq.gz 3917825948 FASTQ R2_L006 unaligned CPTAC3 108e8b34-73a3-47ee-bd45-11ba0073b59e 72d169513e5e18e5d3991cd483cde375 { 'aliquot_tag': 'ALQ_4360e393', 'gdc_sample_type': 'Primary Tumor' } +C3N-02754.DUP_dd047630.RNA-Seq.chimeric.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850045 641e23bf-657a-45b9-8201-b149170224e3.rna_seq.chimeric.gdc_realn.bam 497808158 BAM chimeric harmonized CPTAC3 06e7c4a4-a1b9-40ba-a576-f297193f5886 b03be25b70402ec9c20e6858e0a985f1 { 'aliquot_tag': 'DUP_dd047630', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02754.DUP_dd047630.RNA-Seq.genomic.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850045 641e23bf-657a-45b9-8201-b149170224e3.rna_seq.genomic.gdc_realn.bam 7288102404 BAM genomic harmonized CPTAC3 db192c3b-9a76-406b-a04d-cc22d6f55653 2bae68a26311b432275610cd13cb4229 { 'aliquot_tag': 'DUP_dd047630', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02754.DUP_dd047630.RNA-Seq.R1_L004.T C3N-02754 PDA RNA-Seq tumor CPT0183850045 220126_UNC32-K00270_0314_AHMVJ7BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R1_001.fastq.gz 3158735118 FASTQ R1_L004 unaligned CPTAC3 0e9f4531-da97-4af8-890e-e08f34f36220 7ac6b445f322c952558f4c678b1560ec { 'aliquot_tag': 'DUP_dd047630', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L004' } +C3N-02754.DUP_dd047630.RNA-Seq.R2_L004.T C3N-02754 PDA RNA-Seq tumor CPT0183850045 220126_UNC32-K00270_0314_AHMVJ7BBXY_CCGTGAAG-CAGTGGAT_S14_L004_R2_001.fastq.gz 3453435097 FASTQ R2_L004 unaligned CPTAC3 8471959f-8d39-484b-8c4c-d30ef5961985 80058a53dd033a8701b7cc16502089b6 { 'aliquot_tag': 'DUP_dd047630', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L004' } +C3N-02754.DUP_dd047630.RNA-Seq.transcriptome.T.hg38 C3N-02754 PDA RNA-Seq tumor CPT0183850045 641e23bf-657a-45b9-8201-b149170224e3.rna_seq.transcriptome.gdc_realn.bam 7874163783 BAM transcriptome harmonized CPTAC3 f442be27-a4c8-4290-861c-99afeb5ffb43 6d1cde2e5c823c72c2d13b6838c2dfd5 { 'aliquot_tag': 'DUP_dd047630', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02757.MethArray.Green.A C3N-02757 LUAD Methylation Array tissue_normal CPT0183960006 203028200100_R06C01_Grn.idat 13676221 IDAT Green NA CPTAC3 39a494fe-695f-4cd3-a5cd-4df3cc50625b 3dada41ddcdf117c4f4ea0171e8b0120 { 'aliquot_tag': 'ALQ_ac9d4bfb', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02757.MethArray.Green.T C3N-02757 LUAD Methylation Array tumor CPT0183940007 203219650177_R08C01_Grn.idat 13676221 IDAT Green NA CPTAC3 09af74c8-f13f-440e-89be-7f3cbabc3bfd ee81d572b394fc9276e2fe315b0b5931 { 'aliquot_tag': 'ALQ_a15a280d', 'gdc_sample_type': 'Primary Tumor' } C3N-02757.MethArray.Red.A C3N-02757 LUAD Methylation Array tissue_normal CPT0183960006 203028200100_R06C01_Red.idat 13676221 IDAT Red NA CPTAC3 ab7a09e7-d597-4400-ba2b-362b3303afcb b905e0b88466ee7b945612c3aeeabac0 { 'aliquot_tag': 'ALQ_ac9d4bfb', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -32702,16 +34916,16 @@ C3N-02757.miRNA-Seq.A C3N-02757 LUAD miRNA-Seq tissue_normal CPT0183960009 19013 C3N-02757.miRNA-Seq.A.hg38 C3N-02757 LUAD miRNA-Seq tissue_normal CPT0183960009 e9a2268a-c44f-4bef-95c6-090c983f115f_mirnaseq_gdc_realn.bam 265924767 BAM harmonized CPTAC3 932f2c25-5271-40f4-b527-e3903ae2a7f7 2132057720a1608c0aa0d98e6aca55ae { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02757.miRNA-Seq.T C3N-02757 LUAD miRNA-Seq tumor CPT0183940010 190130_UNC31-K00269_0188_BH2FGCBBXY_CATGGC_S24_L007_R1_001.unaln.bam 208393211 BAM unaligned CPTAC3 e973aa42-0bb2-4a5e-8479-55623bb4d2b6 ecb342c93c3a61bd60d9e1f48ce6232f { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor' } C3N-02757.miRNA-Seq.T.hg38 C3N-02757 LUAD miRNA-Seq tumor CPT0183940010 7287ae53-cd42-40b9-83c9-d21c6421eeac_mirnaseq_gdc_realn.bam 225774645 BAM harmonized CPTAC3 2b656152-02d5-491a-ac4e-78559508cc28 35b3cf73897852a266745751f99aeb4e { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor' } -C3N-02757.RNA-Seq.chimeric.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 bb40e5c3-606c-4cb2-9ff6-8631d860d84c.rna_seq.chimeric.gdc_realn.bam 42414741 BAM chimeric harmonized CPTAC3 a5dc4b98-e046-4064-825a-27d892240500 a3d85623fa14bd7620a03f13c4b9d657 { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02757.RNA-Seq.chimeric.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 3169ccf8-1489-420b-aea1-6dbe5888df89.rna_seq.chimeric.gdc_realn.bam 41475303 BAM chimeric harmonized CPTAC3 9ff21e64-5c62-438c-8d5d-b66b8475369c 682b35c37e5778dcf7aede7f9db7b2d7 { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor' } -C3N-02757.RNA-Seq.genomic.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 bb40e5c3-606c-4cb2-9ff6-8631d860d84c.rna_seq.genomic.gdc_realn.bam 8759567896 BAM genomic harmonized CPTAC3 d5bce019-a42a-4ede-9fd9-8805ea5bc041 40526a65f54109b50b03a303e68fd48e { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02757.RNA-Seq.genomic.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 3169ccf8-1489-420b-aea1-6dbe5888df89.rna_seq.genomic.gdc_realn.bam 8762100447 BAM genomic harmonized CPTAC3 187dc611-3e11-422d-ae72-442db691e030 292c743f7d81297491851b8b064b78c8 { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor' } -C3N-02757.RNA-Seq.R1_L001.A C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L001_R1_001.fastq.gz 4049003402 FASTQ R1_L001 unaligned CPTAC3 25827a14-b2ad-41fb-b8dd-6768b623caf1 ca1672b4ed1135a53b361a6d8f832baf { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02757.RNA-Seq.R1_L002.T C3N-02757 LUAD RNA-Seq tumor CPT0183940010 190131_UNC32-K00270_0142_BH3LFYBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 4010947559 FASTQ R1_L002 unaligned CPTAC3 511c6e23-9d06-4168-9d02-99fb2a748947 2f46949c2da7ca4fcc142014c7edf52e { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor' } -C3N-02757.RNA-Seq.R2_L001.A C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L001_R2_001.fastq.gz 4368896323 FASTQ R2_L001 unaligned CPTAC3 bdd23eab-0f72-4c4e-aacb-24b6eaba8131 62b0999b9aa9e524460fae3eb5c12a81 { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02757.RNA-Seq.R2_L002.T C3N-02757 LUAD RNA-Seq tumor CPT0183940010 190131_UNC32-K00270_0142_BH3LFYBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 4325395313 FASTQ R2_L002 unaligned CPTAC3 3f00c79a-19e8-4faf-ad11-34dab3add995 d6362cb3c264e3cdc3c68191804b0e95 { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor' } -C3N-02757.RNA-Seq.transcriptome.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 bb40e5c3-606c-4cb2-9ff6-8631d860d84c.rna_seq.transcriptome.gdc_realn.bam 9853704490 BAM transcriptome harmonized CPTAC3 ea9beb6c-f4c1-4bdd-9a0f-a40c5fc7cbd9 048ec85138029f2d12de25a2690c5392 { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02757.RNA-Seq.transcriptome.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 3169ccf8-1489-420b-aea1-6dbe5888df89.rna_seq.transcriptome.gdc_realn.bam 8399309912 BAM transcriptome harmonized CPTAC3 8350e801-f3b3-419f-a3c4-85a3ad930587 02ae805cfac46060ef7ba29f7546f582 { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor' } +C3N-02757.RNA-Seq.chimeric.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 1966a71b-dd25-4489-a253-7176758da80b.rna_seq.chimeric.gdc_realn.bam 42395275 BAM chimeric harmonized CPTAC3 1eff8dbd-e758-4e79-8203-6342e9bdc10c 38ca8fd1fa64a9b0d7478c4534f5311d { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02757.RNA-Seq.chimeric.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 55c6c3dd-7a11-4e8a-a231-50a9384759cc.rna_seq.chimeric.gdc_realn.bam 41484467 BAM chimeric harmonized CPTAC3 d062c2ec-a4d0-4379-b6ef-6a37af822b8a 76c9a78876eec1be07bb5db1c48f9295 { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor' } +C3N-02757.RNA-Seq.genomic.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 1966a71b-dd25-4489-a253-7176758da80b.rna_seq.genomic.gdc_realn.bam 8761427203 BAM genomic harmonized CPTAC3 576a65e7-1d54-4a85-bf3d-d1bee800523b f0c0fecf244e4aee1f557d1017ae563c { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02757.RNA-Seq.genomic.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 55c6c3dd-7a11-4e8a-a231-50a9384759cc.rna_seq.genomic.gdc_realn.bam 8762886714 BAM genomic harmonized CPTAC3 0fcd0843-79ed-4bfe-a7a6-4a40795a2b55 51eb93ebd4c752a5dc2682da5c80c8b2 { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor' } +C3N-02757.RNA-Seq.R1_L001.A C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L001_R1_001.fastq.gz 4049003402 FASTQ R1_L001 unaligned CPTAC3 25827a14-b2ad-41fb-b8dd-6768b623caf1 ca1672b4ed1135a53b361a6d8f832baf { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-02757.RNA-Seq.R1_L002.T C3N-02757 LUAD RNA-Seq tumor CPT0183940010 190131_UNC32-K00270_0142_BH3LFYBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 4010947559 FASTQ R1_L002 unaligned CPTAC3 511c6e23-9d06-4168-9d02-99fb2a748947 2f46949c2da7ca4fcc142014c7edf52e { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02757.RNA-Seq.R2_L001.A C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L001_R2_001.fastq.gz 4368896323 FASTQ R2_L001 unaligned CPTAC3 bdd23eab-0f72-4c4e-aacb-24b6eaba8131 62b0999b9aa9e524460fae3eb5c12a81 { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-02757.RNA-Seq.R2_L002.T C3N-02757 LUAD RNA-Seq tumor CPT0183940010 190131_UNC32-K00270_0142_BH3LFYBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 4325395313 FASTQ R2_L002 unaligned CPTAC3 3f00c79a-19e8-4faf-ad11-34dab3add995 d6362cb3c264e3cdc3c68191804b0e95 { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02757.RNA-Seq.transcriptome.A.hg38 C3N-02757 LUAD RNA-Seq tissue_normal CPT0183960009 1966a71b-dd25-4489-a253-7176758da80b.rna_seq.transcriptome.gdc_realn.bam 11169638822 BAM transcriptome harmonized CPTAC3 6723b6d3-bd49-4b6f-93d5-98038ac091fd c6766d989f01fc730ed0cfeaaef242ec { 'aliquot_tag': 'ALQ_3c22566a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02757.RNA-Seq.transcriptome.T.hg38 C3N-02757 LUAD RNA-Seq tumor CPT0183940010 55c6c3dd-7a11-4e8a-a231-50a9384759cc.rna_seq.transcriptome.gdc_realn.bam 9419721038 BAM transcriptome harmonized CPTAC3 d619d0f8-5180-4e05-bc11-af755cd38d64 39d53a11afb5f0ad789c2124aa3b0631 { 'aliquot_tag': 'ALQ_26258cef', 'gdc_sample_type': 'Primary Tumor' } C3N-02757.WGS.N C3N-02757 LUAD WGS blood_normal CPT0184000002 CPT0184000002.WholeGenome.RP-1303.bam 55078150347 BAM aligned CPTAC3 c33094cd-a08b-4e2f-89a9-22decba73274 09b4eece50d53e21c3571bf34652b529 { 'aliquot_tag': 'ALQ_c6181504', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02757.WGS.N.hg38 C3N-02757 LUAD WGS blood_normal CPT0184000002 1d3373a4-7c6e-4b32-8c95-5c5d13732f8f_wgs_gdc_realn.bam 79860273318 BAM harmonized CPTAC3 968912ef-7aff-4502-84d1-0e624131de72 473272ee7ad13cf94f61291525d05d9c { 'aliquot_tag': 'ALQ_c6181504', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02757.WGS.T C3N-02757 LUAD WGS tumor CPT0183940007 CPT0183940007.WholeGenome.RP-1303.bam 125566658657 BAM aligned CPTAC3 5f210d4a-38eb-41b7-807b-ff4e2a973f10 ee9eba6b5ee2f464d32d4fc50d61ff38 { 'aliquot_tag': 'ALQ_a15a280d', 'gdc_sample_type': 'Primary Tumor' } @@ -32730,16 +34944,16 @@ C3N-02758.miRNA-Seq.A C3N-02758 LUAD miRNA-Seq tissue_normal CPT0184060009 19013 C3N-02758.miRNA-Seq.A.hg38 C3N-02758 LUAD miRNA-Seq tissue_normal CPT0184060009 e0a1786a-13de-4b8a-bbf4-6265b75df6c9_mirnaseq_gdc_realn.bam 196932309 BAM harmonized CPTAC3 eed0533b-d330-4977-8c60-fffca12ee7d9 c0adf6826034b157a4f24431a55b3edf { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02758.miRNA-Seq.T C3N-02758 LUAD miRNA-Seq tumor CPT0184040010 190130_UNC31-K00269_0188_BH2FGCBBXY_CATTTT_S35_L007_R1_001.unaln.bam 242404839 BAM unaligned CPTAC3 162906f3-34d6-4d09-bfa8-789af26cd4c1 ce3db5922578105821d56bb3361c3cab { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor' } C3N-02758.miRNA-Seq.T.hg38 C3N-02758 LUAD miRNA-Seq tumor CPT0184040010 bf15b20a-18a1-49b3-9cc8-82595425d8de_mirnaseq_gdc_realn.bam 265237117 BAM harmonized CPTAC3 bc4950cf-21fc-4101-9129-b01a3b4e891c e57b47930f048689b9be3ff8b7542e19 { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02758.RNA-Seq.chimeric.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 55b539f5-3be0-4cce-9ce9-48649dab489d.rna_seq.chimeric.gdc_realn.bam 368303975 BAM chimeric harmonized CPTAC3 77ef0f43-78fb-4e8b-afdb-9fb42d86d118 a122f0a20573e444c41cd515a16ac111 { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02758.RNA-Seq.chimeric.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 0208d31f-3707-4eaa-8ca1-cd4df632dc95.rna_seq.chimeric.gdc_realn.bam 54679472 BAM chimeric harmonized CPTAC3 5c3e21b8-20b6-419b-bb41-c262cad08c51 3cbd402f40c56c18997c8b90a052040e { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02758.RNA-Seq.genomic.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 55b539f5-3be0-4cce-9ce9-48649dab489d.rna_seq.genomic.gdc_realn.bam 8930068914 BAM genomic harmonized CPTAC3 fc24320e-cd94-4fc3-b732-97717b7aa2ee 7f44dbcd2806614c26206078bda3c2b6 { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02758.RNA-Seq.genomic.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 0208d31f-3707-4eaa-8ca1-cd4df632dc95.rna_seq.genomic.gdc_realn.bam 9934009273 BAM genomic harmonized CPTAC3 76f99e6e-eaab-4c06-a3e6-59ab66f829b6 5ccf59270b7d588d2b116ccc36d31775 { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02758.RNA-Seq.R1_L002.T C3N-02758 LUAD RNA-Seq tumor CPT0184040010 190131_UNC32-K00270_0142_BH3LFYBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 4416157129 FASTQ R1_L002 unaligned CPTAC3 46f20b1d-f087-43d0-a706-312864f2bb2d 39891ab0f1a3a4ea093969cca8a184c4 { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02758.RNA-Seq.R1_L008.A C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L008_R1_001.fastq.gz 3802919682 FASTQ R1_L008 unaligned CPTAC3 d1c4f1d6-a577-42ca-aa53-d2b33c30c575 6ee90ecbabbc0d14ed01d08417a25164 { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02758.RNA-Seq.R2_L002.T C3N-02758 LUAD RNA-Seq tumor CPT0184040010 190131_UNC32-K00270_0142_BH3LFYBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 5020616367 FASTQ R2_L002 unaligned CPTAC3 fd7cde66-28d7-4004-8c4c-c10ff1681c6a 2bbead0e27f9e8cdd91c3e9e706fb441 { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02758.RNA-Seq.R2_L008.A C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L008_R2_001.fastq.gz 4225377601 FASTQ R2_L008 unaligned CPTAC3 c5d599ab-174b-4a33-897c-42616b24ebf5 e342a870c99196af08f304f7e0d780a5 { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02758.RNA-Seq.transcriptome.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 55b539f5-3be0-4cce-9ce9-48649dab489d.rna_seq.transcriptome.gdc_realn.bam 7544440347 BAM transcriptome harmonized CPTAC3 71b5d23b-f5f4-47c9-bc3a-cec88bd4df5b 9b0348164724df7dcb32b1339e77e5b4 { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02758.RNA-Seq.transcriptome.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 0208d31f-3707-4eaa-8ca1-cd4df632dc95.rna_seq.transcriptome.gdc_realn.bam 8982651181 BAM transcriptome harmonized CPTAC3 ae7c30a3-97f2-40a9-9268-d2bcb19b29de 042759e3952867d561dab79128927cfa { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02758.RNA-Seq.chimeric.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 f85c648e-595b-4a03-ab86-c0ca7ce38fb8.rna_seq.chimeric.gdc_realn.bam 368282589 BAM chimeric harmonized CPTAC3 9cf40df9-a76e-480d-b793-ce4a332f5e04 27df2b33b1a1aeb17af4a6a47a81c106 { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02758.RNA-Seq.chimeric.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 f6aaf704-ebc5-43b1-8d86-dc7590bd3313.rna_seq.chimeric.gdc_realn.bam 54666016 BAM chimeric harmonized CPTAC3 b239c5f2-6924-45f9-8583-f8d067c8c5ff c4114776ac4501dd3a582c93501646eb { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02758.RNA-Seq.genomic.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 f85c648e-595b-4a03-ab86-c0ca7ce38fb8.rna_seq.genomic.gdc_realn.bam 8931842697 BAM genomic harmonized CPTAC3 de5fa054-86ee-45a1-8bd5-8985962ff0ee 574a6c2b1fc32219a79d59686ac753bc { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02758.RNA-Seq.genomic.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 f6aaf704-ebc5-43b1-8d86-dc7590bd3313.rna_seq.genomic.gdc_realn.bam 9935531951 BAM genomic harmonized CPTAC3 e10ebba3-fb4f-46ff-b00c-635254cf16f7 ddf85a4a8cbf95660c6788e8c3421455 { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02758.RNA-Seq.R1_L002.T C3N-02758 LUAD RNA-Seq tumor CPT0184040010 190131_UNC32-K00270_0142_BH3LFYBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 4416157129 FASTQ R1_L002 unaligned CPTAC3 46f20b1d-f087-43d0-a706-312864f2bb2d 39891ab0f1a3a4ea093969cca8a184c4 { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02758.RNA-Seq.R1_L008.A C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L008_R1_001.fastq.gz 3802919682 FASTQ R1_L008 unaligned CPTAC3 d1c4f1d6-a577-42ca-aa53-d2b33c30c575 6ee90ecbabbc0d14ed01d08417a25164 { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-02758.RNA-Seq.R2_L002.T C3N-02758 LUAD RNA-Seq tumor CPT0184040010 190131_UNC32-K00270_0142_BH3LFYBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 5020616367 FASTQ R2_L002 unaligned CPTAC3 fd7cde66-28d7-4004-8c4c-c10ff1681c6a 2bbead0e27f9e8cdd91c3e9e706fb441 { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02758.RNA-Seq.R2_L008.A C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACAGTG_S3_L008_R2_001.fastq.gz 4225377601 FASTQ R2_L008 unaligned CPTAC3 c5d599ab-174b-4a33-897c-42616b24ebf5 e342a870c99196af08f304f7e0d780a5 { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-02758.RNA-Seq.transcriptome.A.hg38 C3N-02758 LUAD RNA-Seq tissue_normal CPT0184060009 f85c648e-595b-4a03-ab86-c0ca7ce38fb8.rna_seq.transcriptome.gdc_realn.bam 8499803193 BAM transcriptome harmonized CPTAC3 40e9c353-260e-4e0f-a729-d09abd4a2573 7b327965dedacf5e2390a69e43e2abae { 'aliquot_tag': 'ALQ_de8a392c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02758.RNA-Seq.transcriptome.T.hg38 C3N-02758 LUAD RNA-Seq tumor CPT0184040010 f6aaf704-ebc5-43b1-8d86-dc7590bd3313.rna_seq.transcriptome.gdc_realn.bam 10156671059 BAM transcriptome harmonized CPTAC3 e404ae6c-e1aa-4ff3-83de-753d3e1f08ee d7bd7de419d362dca3f31bd5f353681a { 'aliquot_tag': 'ALQ_c48de3a9', 'gdc_sample_type': 'Primary Tumor' } C3N-02758.WGS.N C3N-02758 LUAD WGS blood_normal CPT0184100002 CPT0184100002.WholeGenome.RP-1303.bam 54245059817 BAM aligned CPTAC3 a596b2c4-406a-4f01-93fc-7e426ecddd6c ec79261dae031ce529a06100288dd509 { 'aliquot_tag': 'ALQ_d44c6a1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02758.WGS.N.hg38 C3N-02758 LUAD WGS blood_normal CPT0184100002 05fdd306-6939-4645-b421-896b80d20cc7_wgs_gdc_realn.bam 78545686844 BAM harmonized CPTAC3 36d5e66c-eb4b-4e07-bd17-0eb4cdc08dde 681e3272e25a5173238c1cd1b5c270d1 { 'aliquot_tag': 'ALQ_d44c6a1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02758.WGS.T C3N-02758 LUAD WGS tumor CPT0184040007 CPT0184040007.WholeGenome.RP-1303.bam 118725639041 BAM aligned CPTAC3 05dc4d7e-8dcf-4f52-84ea-7f31ca92b436 cb5c2d2d4827fcd4b1af527199f56218 { 'aliquot_tag': 'ALQ_43f2474b', 'gdc_sample_type': 'Primary Tumor' } @@ -32754,11 +34968,11 @@ C3N-02761.MethArray.Green.T C3N-02761 CCRCC Methylation Array tumor CPT018414000 C3N-02761.MethArray.Red.T C3N-02761 CCRCC Methylation Array tumor CPT0184140007 203219650136_R08C01_Red.idat 13676236 IDAT Red NA CPTAC3 c3395272-d5cc-4ff6-981b-01838e8724db 64cc84d74a54f686b8da6d1859963e72 { 'aliquot_tag': 'ALQ_88ae94ee', 'gdc_sample_type': 'Primary Tumor' } C3N-02761.miRNA-Seq.T C3N-02761 CCRCC miRNA-Seq tumor CPT0184140009 190130_UNC31-K00269_0188_BH2FGCBBXY_TATAAT_S44_L005_R1_001.unaln.bam 260189612 BAM unaligned CPTAC3 567e837d-4038-4e47-a19d-908d78ea537a 5ad55b63831c138537d36adb5628e486 { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor' } C3N-02761.miRNA-Seq.T.hg38 C3N-02761 CCRCC miRNA-Seq tumor CPT0184140009 f897e7ed-f385-4f16-b14b-48fb32b68981_mirnaseq_gdc_realn.bam 290135199 BAM harmonized CPTAC3 ed2852cd-9a02-4c5c-8adc-951d5f9cc19f 96de598f642f292f212a06b368e0c963 { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02761.RNA-Seq.chimeric.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 96be3018-2f13-4632-a853-a90fd52b226d.rna_seq.chimeric.gdc_realn.bam 30572064 BAM chimeric harmonized CPTAC3 38a42eb0-ebed-496f-9240-ce9bcbc921c1 53d699da5a805a46713911e5b59f0d00 { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02761.RNA-Seq.genomic.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 96be3018-2f13-4632-a853-a90fd52b226d.rna_seq.genomic.gdc_realn.bam 6710934235 BAM genomic harmonized CPTAC3 19695a5e-21f0-4783-81db-c532ea308a3f 20d68d4a393e38ca38b30b80b2b0ab07 { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02761.RNA-Seq.R1_L001.T C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3197037971 FASTQ R1_L001 unaligned CPTAC3 3ba9943f-4dac-4963-be8b-586d06e2d2e9 43880c0b69ea012645ad612a27aba3f8 { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02761.RNA-Seq.R2_L001.T C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L001_R2_001.fastq.gz 3505311243 FASTQ R2_L001 unaligned CPTAC3 faf38c61-801e-49cf-b180-441db797ad8d 4b046073d3975ab7b27131b5cf25d0ee { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02761.RNA-Seq.transcriptome.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 96be3018-2f13-4632-a853-a90fd52b226d.rna_seq.transcriptome.gdc_realn.bam 7377184197 BAM transcriptome harmonized CPTAC3 5177139d-a132-4dba-a578-45b968adc94d 22a31f381ed3aabeb2498b39146d5d4c { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02761.RNA-Seq.chimeric.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 dc7570d9-70a1-4671-a93a-edfef8d080fe.rna_seq.chimeric.gdc_realn.bam 30561232 BAM chimeric harmonized CPTAC3 b62c7d4d-d251-4f98-98e6-32ec87e3f132 b067e906cc5626ef13930e2f0e26a065 { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02761.RNA-Seq.genomic.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 dc7570d9-70a1-4671-a93a-edfef8d080fe.rna_seq.genomic.gdc_realn.bam 6712067680 BAM genomic harmonized CPTAC3 b491cbae-6c92-48d0-a9ad-6b32759eab7f 4042a46f67d8f9f4d246f7102e19e6db { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor' } +C3N-02761.RNA-Seq.R1_L001.T C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L001_R1_001.fastq.gz 3197037971 FASTQ R1_L001 unaligned CPTAC3 3ba9943f-4dac-4963-be8b-586d06e2d2e9 43880c0b69ea012645ad612a27aba3f8 { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02761.RNA-Seq.R2_L001.T C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L001_R2_001.fastq.gz 3505311243 FASTQ R2_L001 unaligned CPTAC3 faf38c61-801e-49cf-b180-441db797ad8d 4b046073d3975ab7b27131b5cf25d0ee { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02761.RNA-Seq.transcriptome.T.hg38 C3N-02761 CCRCC RNA-Seq tumor CPT0184140009 dc7570d9-70a1-4671-a93a-edfef8d080fe.rna_seq.transcriptome.gdc_realn.bam 8445666020 BAM transcriptome harmonized CPTAC3 816846b5-0ed7-4e9d-b266-4064aadba8c4 d9715c46dac5897540458765f9f86c31 { 'aliquot_tag': 'ALQ_6f16b9e9', 'gdc_sample_type': 'Primary Tumor' } C3N-02761.WGS.N C3N-02761 CCRCC WGS blood_normal CPT0184200002 CPT0184200002.WholeGenome.RP-1303.bam 84372807761 BAM aligned CPTAC3 72c84c02-360b-47a2-b24c-4abc75fff61a e8837343d340acb0d97c1fabaec4fa1f { 'aliquot_tag': 'ALQ_8bd0b40f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02761.WGS.N.hg38 C3N-02761 CCRCC WGS blood_normal CPT0184200002 8ac61f4c-fbb4-4064-8a3c-6ebb21d820fe_wgs_gdc_realn.bam 121970075617 BAM harmonized CPTAC3 d8f71ee5-3e3c-47ad-a764-513f89e6c472 673423fee832f0adb017e010fad6f47e { 'aliquot_tag': 'ALQ_8bd0b40f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02761.WGS.T C3N-02761 CCRCC WGS tumor CPT0184140007 CPT0184140007.WholeGenome.RP-1303.bam 106341197654 BAM aligned CPTAC3 60013e08-6152-4f58-9b01-0674ab99aca3 2a312af9e848b49b98cf7357841a50b8 { 'aliquot_tag': 'ALQ_88ae94ee', 'gdc_sample_type': 'Primary Tumor' } @@ -32771,11 +34985,11 @@ C3N-02763.MethArray.Green.T C3N-02763 CCRCC Methylation Array tumor CPT018424001 C3N-02763.MethArray.Red.T C3N-02763 CCRCC Methylation Array tumor CPT0184240012 203219650211_R08C01_Red.idat 13676235 IDAT Red NA CPTAC3 f17ec327-67c4-4090-ab33-1d996098508a 727c91ba716ffc5aa0d158e631cf626e { 'aliquot_tag': 'ALQ_674b238e', 'gdc_sample_type': 'Primary Tumor' } C3N-02763.miRNA-Seq.T C3N-02763 CCRCC miRNA-Seq tumor CPT0184240010 190130_UNC31-K00269_0188_BH2FGCBBXY_GACGAC_S41_L005_R1_001.unaln.bam 242322712 BAM unaligned CPTAC3 6777c96b-037b-488d-9de7-0adec155b9f0 c7d51bf4d98e8f320fd02606d5c9fddb { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor' } C3N-02763.miRNA-Seq.T.hg38 C3N-02763 CCRCC miRNA-Seq tumor CPT0184240010 06a9a18d-cf25-4ca0-964d-ee101420a829_mirnaseq_gdc_realn.bam 266581041 BAM harmonized CPTAC3 a6c0bb44-8d70-4ab4-b460-723728542863 5df53c51e0c5f1fe0438d5c4474939ba { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02763.RNA-Seq.chimeric.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 242adce7-4c14-47c2-a740-edd9e9faca2b.rna_seq.chimeric.gdc_realn.bam 48250058 BAM chimeric harmonized CPTAC3 29d69c0b-ea0c-42e2-9041-092f01401aef d92076be28615b5c94a39e62a4a4276e { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02763.RNA-Seq.genomic.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 242adce7-4c14-47c2-a740-edd9e9faca2b.rna_seq.genomic.gdc_realn.bam 8408347042 BAM genomic harmonized CPTAC3 e2707410-6068-4878-bc86-f14c40f125a6 f09ea291d8daea4b4b25c067bc4f949d { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02763.RNA-Seq.R1_L001.T C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 190125_UNC31-K00269_0184_AH3M32BBXY_GTCCGC_S3_L001_R1_001.fastq.gz 3879862953 FASTQ R1_L001 unaligned CPTAC3 cf1b18a5-cede-459e-ba03-1803479e8f5b d0c3fd83465e9827fe98840ec8999635 { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02763.RNA-Seq.R2_L001.T C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 190125_UNC31-K00269_0184_AH3M32BBXY_GTCCGC_S3_L001_R2_001.fastq.gz 4272884821 FASTQ R2_L001 unaligned CPTAC3 76e5e43f-8bcf-4429-9450-7a2d2903eca7 372a0264b66d702b0435b8a480e0269d { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-02763.RNA-Seq.transcriptome.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 242adce7-4c14-47c2-a740-edd9e9faca2b.rna_seq.transcriptome.gdc_realn.bam 9763689749 BAM transcriptome harmonized CPTAC3 82ff3546-091e-4441-8c4e-5f53704eb700 96814f096788318025139bda281e47f8 { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor' } +C3N-02763.RNA-Seq.chimeric.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 ef4aba85-69d0-47c5-9e9b-7f65123f9d5d.rna_seq.chimeric.gdc_realn.bam 48222922 BAM chimeric harmonized CPTAC3 4c0d83e9-fc42-4b64-a5b3-23e8e38222d4 cdad61aa3f0e559dad805c8269d44181 { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor' } +C3N-02763.RNA-Seq.genomic.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 ef4aba85-69d0-47c5-9e9b-7f65123f9d5d.rna_seq.genomic.gdc_realn.bam 8409042230 BAM genomic harmonized CPTAC3 632ba398-bd36-41a3-b477-be9fafc47b18 17cf1b4068e27a92cb627438332886a5 { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor' } +C3N-02763.RNA-Seq.R1_L001.T C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 190125_UNC31-K00269_0184_AH3M32BBXY_GTCCGC_S3_L001_R1_001.fastq.gz 3879862953 FASTQ R1_L001 unaligned CPTAC3 cf1b18a5-cede-459e-ba03-1803479e8f5b d0c3fd83465e9827fe98840ec8999635 { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02763.RNA-Seq.R2_L001.T C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 190125_UNC31-K00269_0184_AH3M32BBXY_GTCCGC_S3_L001_R2_001.fastq.gz 4272884821 FASTQ R2_L001 unaligned CPTAC3 76e5e43f-8bcf-4429-9450-7a2d2903eca7 372a0264b66d702b0435b8a480e0269d { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02763.RNA-Seq.transcriptome.T.hg38 C3N-02763 CCRCC RNA-Seq tumor CPT0184240010 ef4aba85-69d0-47c5-9e9b-7f65123f9d5d.rna_seq.transcriptome.gdc_realn.bam 11211408561 BAM transcriptome harmonized CPTAC3 cf51ae1d-f722-42fe-aca3-f3ae126bef12 c49f9df9bfaf865c3c0b6f2d9421f728 { 'aliquot_tag': 'ALQ_894542a2', 'gdc_sample_type': 'Primary Tumor' } C3N-02763.WGS.N C3N-02763 CCRCC WGS blood_normal CPT0184300002 CPT0184300002.WholeGenome.RP-1303.bam 51487786011 BAM aligned CPTAC3 85bed1c5-72f0-4a5f-83d2-87356d7bc01b a704285d72e1aea0e6de0ad778b78d86 { 'aliquot_tag': 'ALQ_408c67aa', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02763.WGS.N.hg38 C3N-02763 CCRCC WGS blood_normal CPT0184300002 5a2ff964-2739-4720-81e0-a04c493b51c4_wgs_gdc_realn.bam 74913379784 BAM harmonized CPTAC3 2a65e51a-4f6c-464e-89fc-8f4981a7a4dd 3534d50bb8f8b4909400ec9ee439d644 { 'aliquot_tag': 'ALQ_408c67aa', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02763.WGS.T C3N-02763 CCRCC WGS tumor CPT0184240012 CPT0184240012.WholeGenome.RP-1303.bam 88743332934 BAM aligned CPTAC3 87a32114-f55f-4458-9e9c-1324ebf0f149 e2aa27a3b7382af51a4ac41d1874a836 { 'aliquot_tag': 'ALQ_674b238e', 'gdc_sample_type': 'Primary Tumor' } @@ -32792,16 +35006,16 @@ C3N-02764.miRNA-Seq.A C3N-02764 LUAD miRNA-Seq tissue_normal CPT0184340009 19013 C3N-02764.miRNA-Seq.A.hg38 C3N-02764 LUAD miRNA-Seq tissue_normal CPT0184340009 dad34d9b-5343-4854-b1bb-5418dd1daacf_mirnaseq_gdc_realn.bam 241599094 BAM harmonized CPTAC3 d3982410-5c25-4f64-8aad-1d43f3556908 d836db5c038a51b676d54d5c2b0c8050 { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02764.miRNA-Seq.T C3N-02764 LUAD miRNA-Seq tumor CPT0184350007 190130_UNC31-K00269_0188_BH2FGCBBXY_ACTGAT_S28_L007_R1_001.unaln.bam 261053833 BAM unaligned CPTAC3 9e618ba8-05eb-471b-97b8-fa9597569694 829f653756c154759ad7c2818cba36d2 { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor' } C3N-02764.miRNA-Seq.T.hg38 C3N-02764 LUAD miRNA-Seq tumor CPT0184350007 ee7eac4c-5aef-477e-b436-39608532ae54_mirnaseq_gdc_realn.bam 282752311 BAM harmonized CPTAC3 9565ae8f-8350-4d92-8d40-babbe97ca2c3 4d37bc63c83aa69745bf1d0de72006e9 { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor' } -C3N-02764.RNA-Seq.chimeric.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 85bbcb9e-b3c0-446b-80ba-47f8ab713f14.rna_seq.chimeric.gdc_realn.bam 398179423 BAM chimeric harmonized CPTAC3 4500d840-c201-4010-8a94-efa785753f6a b6ac4c556ad9255474925173e8cb1b86 { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02764.RNA-Seq.chimeric.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 8849cdec-e746-4119-8044-dca6069f9923.rna_seq.chimeric.gdc_realn.bam 46506582 BAM chimeric harmonized CPTAC3 96309134-9dbb-47ad-97d6-0aecdf984124 7dd02bc8d5a832923c1147c4c1c909c0 { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor' } -C3N-02764.RNA-Seq.genomic.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 85bbcb9e-b3c0-446b-80ba-47f8ab713f14.rna_seq.genomic.gdc_realn.bam 9436390506 BAM genomic harmonized CPTAC3 8966e17a-2048-4876-817e-54324cc0030a 53fd16cd5e2a899ee210fb75b5ea96fe { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02764.RNA-Seq.genomic.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 8849cdec-e746-4119-8044-dca6069f9923.rna_seq.genomic.gdc_realn.bam 9529474873 BAM genomic harmonized CPTAC3 1c8c7475-2678-4465-aa3c-4c1df5e83ca6 a20a55dd7ae9a80b8dbc8b0a8576a768 { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor' } -C3N-02764.RNA-Seq.R1_L008.A C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L008_R1_001.fastq.gz 3977611664 FASTQ R1_L008 unaligned CPTAC3 5b1e22db-ad4d-48f4-9542-230fbf50adf9 8e9f35578ee484f430d5059f40ea43b1 { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02764.RNA-Seq.R1_L008.T C3N-02764 LUAD RNA-Seq tumor CPT0184350007 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L008_R1_001.fastq.gz 4487412544 FASTQ R1_L008 unaligned CPTAC3 33743fd4-9138-4827-b68d-88929bc34b1a f01f113e5779df17312b8b8829110950 { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor' } -C3N-02764.RNA-Seq.R2_L008.A C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L008_R2_001.fastq.gz 4479486696 FASTQ R2_L008 unaligned CPTAC3 f9876b80-3332-4f2a-9996-075ce2e9810c 70a6f4c1f235a3b65f21f5ad4feafce2 { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02764.RNA-Seq.R2_L008.T C3N-02764 LUAD RNA-Seq tumor CPT0184350007 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L008_R2_001.fastq.gz 4408956570 FASTQ R2_L008 unaligned CPTAC3 a106d61c-210f-4fba-b822-452636328533 45972a920500256c010cf2a9d4c35ce7 { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor' } -C3N-02764.RNA-Seq.transcriptome.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 85bbcb9e-b3c0-446b-80ba-47f8ab713f14.rna_seq.transcriptome.gdc_realn.bam 8629114632 BAM transcriptome harmonized CPTAC3 28bae7de-2594-4780-a7f6-7dd56945cadb aefd71c1566602c7e3c59a5eba38308d { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02764.RNA-Seq.transcriptome.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 8849cdec-e746-4119-8044-dca6069f9923.rna_seq.transcriptome.gdc_realn.bam 9998444096 BAM transcriptome harmonized CPTAC3 c3d6fa23-9d71-4f1e-a0e5-4f8a5bde3e19 f012f793760872f45f9468fea3d080e9 { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor' } +C3N-02764.RNA-Seq.chimeric.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 b4c1824e-8a57-49c8-924d-6669f2a1b21a.rna_seq.chimeric.gdc_realn.bam 398158731 BAM chimeric harmonized CPTAC3 10819cd2-8349-4ad5-8aba-5f097239d81d 4c7f163178a258a9a0e8c0f83f3f143a { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02764.RNA-Seq.chimeric.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 c51737ad-f26b-4ca2-8ac3-44a1f8328258.rna_seq.chimeric.gdc_realn.bam 46503355 BAM chimeric harmonized CPTAC3 837d31f8-31a2-4e67-92f9-a38ce3f723ae f27ca997528dc70ae002c78b2658820a { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor' } +C3N-02764.RNA-Seq.genomic.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 b4c1824e-8a57-49c8-924d-6669f2a1b21a.rna_seq.genomic.gdc_realn.bam 9437111423 BAM genomic harmonized CPTAC3 8112db65-c34e-4a8b-9043-797d05d61d9a d7158e83da613fca34efa9dd16baf63d { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02764.RNA-Seq.genomic.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 c51737ad-f26b-4ca2-8ac3-44a1f8328258.rna_seq.genomic.gdc_realn.bam 9531009107 BAM genomic harmonized CPTAC3 f49dcc74-0d74-4716-a63c-4fcc3612d56c ba24bd293a463f761ff37787b5a75731 { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor' } +C3N-02764.RNA-Seq.R1_L008.A C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L008_R1_001.fastq.gz 3977611664 FASTQ R1_L008 unaligned CPTAC3 5b1e22db-ad4d-48f4-9542-230fbf50adf9 8e9f35578ee484f430d5059f40ea43b1 { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-02764.RNA-Seq.R1_L008.T C3N-02764 LUAD RNA-Seq tumor CPT0184350007 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L008_R1_001.fastq.gz 4487412544 FASTQ R1_L008 unaligned CPTAC3 33743fd4-9138-4827-b68d-88929bc34b1a f01f113e5779df17312b8b8829110950 { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02764.RNA-Seq.R2_L008.A C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 190131_UNC32-K00270_0142_BH3LFYBBXY_GCCAAT_S2_L008_R2_001.fastq.gz 4479486696 FASTQ R2_L008 unaligned CPTAC3 f9876b80-3332-4f2a-9996-075ce2e9810c 70a6f4c1f235a3b65f21f5ad4feafce2 { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-02764.RNA-Seq.R2_L008.T C3N-02764 LUAD RNA-Seq tumor CPT0184350007 190201_UNC31-K00269_0190_BH3LFKBBXY_ATCACG_S6_L008_R2_001.fastq.gz 4408956570 FASTQ R2_L008 unaligned CPTAC3 a106d61c-210f-4fba-b822-452636328533 45972a920500256c010cf2a9d4c35ce7 { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02764.RNA-Seq.transcriptome.A.hg38 C3N-02764 LUAD RNA-Seq tissue_normal CPT0184340009 b4c1824e-8a57-49c8-924d-6669f2a1b21a.rna_seq.transcriptome.gdc_realn.bam 9672833989 BAM transcriptome harmonized CPTAC3 dca699f6-f9c4-4862-97d5-fbd1a1a242fa 3d13786491c91b82327ddaf6beb6e0ba { 'aliquot_tag': 'ALQ_22de18e2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02764.RNA-Seq.transcriptome.T.hg38 C3N-02764 LUAD RNA-Seq tumor CPT0184350007 c51737ad-f26b-4ca2-8ac3-44a1f8328258.rna_seq.transcriptome.gdc_realn.bam 11173237390 BAM transcriptome harmonized CPTAC3 55d826fe-6380-4820-9ac0-947d4f761070 9b3540c02f3688d1cebf4b6dce48daee { 'aliquot_tag': 'ALQ_f8061c55', 'gdc_sample_type': 'Primary Tumor' } C3N-02764.WGS.N C3N-02764 LUAD WGS blood_normal CPT0184400002 CPT0184400002.WholeGenome.RP-1303.bam 52696440353 BAM aligned CPTAC3 086abff8-7d41-44b4-9758-c68b6fca5ba6 5a81a23a0b9d7f280f9a39a7ebeef3ab { 'aliquot_tag': 'ALQ_5d895712', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02764.WGS.N.hg38 C3N-02764 LUAD WGS blood_normal CPT0184400002 668cc3ea-3515-4e22-8c18-23fd22dfbc31_wgs_gdc_realn.bam 75146831636 BAM harmonized CPTAC3 21cfc630-77c8-4a73-b634-aacc83edc896 4a88ae7d5f62464175ce9824e9429e00 { 'aliquot_tag': 'ALQ_5d895712', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02764.WGS.T C3N-02764 LUAD WGS tumor CPT0184350010 CPT0184350010.WholeGenome.RP-1303.bam 50400358434 BAM aligned CPTAC3 c305cb68-65be-4185-a0b0-dd24f23af386 2198059f38361742a56ef6593c185837 { 'aliquot_tag': 'ALQ_7f79b8b7', 'gdc_sample_type': 'Primary Tumor' } @@ -32812,25 +35026,34 @@ C3N-02764.WXS.N C3N-02764 LUAD WXS blood_normal CPT0184400002 CPT0184400002.Whol C3N-02764.WXS.N.hg38 C3N-02764 LUAD WXS blood_normal CPT0184400002 668cc3ea-3515-4e22-8c18-23fd22dfbc31_wxs_gdc_realn.bam 30085370723 BAM harmonized CPTAC3 1d9880d8-f0e9-4c28-ad1e-4b0c121db2bd 0028aaac7d03e158a55f23d246bbe187 { 'aliquot_tag': 'ALQ_5d895712', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02764.WXS.T C3N-02764 LUAD WXS tumor CPT0184350010 CPT0184350010.WholeExome.RP-1303.bam 21853775270 BAM aligned CPTAC3 52e6c6d0-af75-452e-9698-8e594d4ac393 d7b3a8f6efe273f410a72995244e811e { 'aliquot_tag': 'ALQ_7f79b8b7', 'gdc_sample_type': 'Primary Tumor' } C3N-02764.WXS.T.hg38 C3N-02764 LUAD WXS tumor CPT0184350010 eaea7605-ec9f-4634-979f-8b8346388609_wxs_gdc_realn.bam 29818447906 BAM harmonized CPTAC3 f091ceb9-d929-4311-a99e-2d44ff3b90fd ef0d91d72ae453dfae75c441bbe45ce2 { 'aliquot_tag': 'ALQ_7f79b8b7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02765.ANN_66d7c4ee.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 c4214363-c57a-4e9d-8dfe-25360a58a333.rna_seq.chimeric.gdc_realn.bam 212009093 BAM chimeric harmonized CPTAC3 4f4350c2-b9bf-4456-a754-3f99734a9fb5 ae90d98152b71052d1f84c5e077ce542 { 'aliquot_tag': 'ANN_66d7c4ee', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02765.ANN_66d7c4ee.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 c4214363-c57a-4e9d-8dfe-25360a58a333.rna_seq.genomic.gdc_realn.bam 8006351480 BAM genomic harmonized CPTAC3 22ec8346-a8c8-4802-9e0d-0d94f679bc5c 3588d6e909ed969aab0db433fbbc7722 { 'aliquot_tag': 'ANN_66d7c4ee', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02765.ANN_66d7c4ee.RNA-Seq.R1_L007.T C3N-02765 PDA RNA-Seq tumor CPT0184450049 200807_UNC32-K00270_0255_AHHY2WBBXY_GTCTACAC-GCCAAGGT_S11_L007_R1_001.fastq.gz 3476702923 FASTQ R1_L007 unaligned CPTAC3 6ed9b2ec-4ae8-40e3-a76c-a358dc9199c2 2596aa9862d456523691404159005811 { 'aliquot_tag': 'ANN_66d7c4ee', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02765.ANN_66d7c4ee.RNA-Seq.R2_L007.T C3N-02765 PDA RNA-Seq tumor CPT0184450049 200807_UNC32-K00270_0255_AHHY2WBBXY_GTCTACAC-GCCAAGGT_S11_L007_R2_001.fastq.gz 3883224355 FASTQ R2_L007 unaligned CPTAC3 ec78d64b-29ef-457b-a8ef-e1159a06d851 208816663ed0a0d09f47972a77e21144 { 'aliquot_tag': 'ANN_66d7c4ee', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02765.ANN_66d7c4ee.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 c4214363-c57a-4e9d-8dfe-25360a58a333.rna_seq.transcriptome.gdc_realn.bam 8879750105 BAM transcriptome harmonized CPTAC3 94e62b8e-5676-4f8e-8fc4-bc6ee1a2fbb1 c402ca91ee6747ac481d06435299b171 { 'aliquot_tag': 'ANN_66d7c4ee', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02765.ANN_66d7c4ee.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 8094974c-f07b-44ec-b2c4-b1c0f6e4f5ff.rna_seq.chimeric.gdc_realn.bam 212029964 BAM chimeric harmonized CPTAC3 24a6d9bd-1104-4990-9b88-7cd8507623ca 1f86388e7cd34b4a761f6bf179408b90 { 'aliquot_tag': 'ANN_66d7c4ee', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02765.ANN_66d7c4ee.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 8094974c-f07b-44ec-b2c4-b1c0f6e4f5ff.rna_seq.genomic.gdc_realn.bam 8016339044 BAM genomic harmonized CPTAC3 9b6bfe77-e448-456d-abf0-59976de38cdd 67dfe4d4d0e73ccbeea70cc023405da7 { 'aliquot_tag': 'ANN_66d7c4ee', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02765.ANN_66d7c4ee.RNA-Seq.R1_L007.T C3N-02765 PDA RNA-Seq tumor CPT0184450049 200807_UNC32-K00270_0255_AHHY2WBBXY_GTCTACAC-GCCAAGGT_S11_L007_R1_001.fastq.gz 3476702923 FASTQ R1_L007 unaligned CPTAC3 6ed9b2ec-4ae8-40e3-a76c-a358dc9199c2 2596aa9862d456523691404159005811 { 'aliquot_tag': 'ANN_66d7c4ee', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L007' } +C3N-02765.ANN_66d7c4ee.RNA-Seq.R2_L007.T C3N-02765 PDA RNA-Seq tumor CPT0184450049 200807_UNC32-K00270_0255_AHHY2WBBXY_GTCTACAC-GCCAAGGT_S11_L007_R2_001.fastq.gz 3883224355 FASTQ R2_L007 unaligned CPTAC3 ec78d64b-29ef-457b-a8ef-e1159a06d851 208816663ed0a0d09f47972a77e21144 { 'aliquot_tag': 'ANN_66d7c4ee', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L007' } +C3N-02765.ANN_66d7c4ee.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450049 8094974c-f07b-44ec-b2c4-b1c0f6e4f5ff.rna_seq.transcriptome.gdc_realn.bam 10085856004 BAM transcriptome harmonized CPTAC3 23a0dba5-ea8c-415a-ae9a-0a3dddd014ab 76a1ece727575ac091682d5a696ddedb { 'aliquot_tag': 'ANN_66d7c4ee', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } C3N-02765.DUP_17d8912.WXS.T C3N-02765 PDA WXS tumor CPT0184450054 CPT0184450054.WholeExome.RP-1303.bam 37835203105 BAM aligned CPTAC3 3524f979-43dc-4e22-90a7-d940284a03f0 d6b203460146549fbd742f47f73af56f { 'aliquot_tag': 'DUP_17d8912', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02765.DUP_17d8912.WXS.T.hg38 C3N-02765 PDA WXS tumor CPT0184450054 46f39431-79cf-4335-beda-d2eb94b2fd97_wxs_gdc_realn.bam 51745092746 BAM harmonized CPTAC3 48c289b8-9604-45e2-a4f8-117b7e9817b0 22500fa22faa2c433e8de5e9d98539df { 'aliquot_tag': 'DUP_17d8912', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-02765.DUP_2d3d1ec8.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450060 d5494358-19e7-4b54-8c2e-342f547a36e5.rna_seq.chimeric.gdc_realn.bam 82788099 BAM chimeric harmonized CPTAC3 e83e9b63-87dc-4797-8500-eabf72dc3f6f c5f2f3cab7863223dfde812811f6db6c { 'aliquot_tag': 'DUP_2d3d1ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02765.DUP_2d3d1ec8.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450060 d5494358-19e7-4b54-8c2e-342f547a36e5.rna_seq.genomic.gdc_realn.bam 9301308723 BAM genomic harmonized CPTAC3 de8e9fcb-be72-4390-ae3f-f16d4824b304 e4b809522b3bd7ad7c44c8ddd920cc29 { 'aliquot_tag': 'DUP_2d3d1ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02765.DUP_2d3d1ec8.RNA-Seq.R1_L001.T C3N-02765 PDA RNA-Seq tumor CPT0184450060 220126_UNC32-K00270_0314_AHMVJ7BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3329241887 FASTQ R1_L001 unaligned CPTAC3 838bb493-b2e5-4f62-975e-f6ea4ea8eee6 460e6df0617834576ad02e6bfaf31bcb { 'aliquot_tag': 'DUP_2d3d1ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L001' } +C3N-02765.DUP_2d3d1ec8.RNA-Seq.R2_L001.T C3N-02765 PDA RNA-Seq tumor CPT0184450060 220126_UNC32-K00270_0314_AHMVJ7BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 3985436345 FASTQ R2_L001 unaligned CPTAC3 47d05475-2278-4844-81bb-4a30b2cbd3cf a3151146ba3d4dc26c5296d123b358b8 { 'aliquot_tag': 'DUP_2d3d1ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L001' } +C3N-02765.DUP_2d3d1ec8.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450060 d5494358-19e7-4b54-8c2e-342f547a36e5.rna_seq.transcriptome.gdc_realn.bam 9542210581 BAM transcriptome harmonized CPTAC3 03c1bdef-4fe3-40f6-ab04-902349cd07dd 3bb69536fbe7c159930679f1843729c6 { 'aliquot_tag': 'DUP_2d3d1ec8', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02765.DUP_767ab984.WXS.T C3N-02765 PDA WXS tumor CPT0184450055 CPT0184450055.WholeExome.RP-1303.bam 27342164261 BAM aligned CPTAC3 000d31d3-1c1b-489a-aa3d-fb7ca3966905 1afb1b87e76c0ab738528d59b976ce2b { 'aliquot_tag': 'DUP_767ab984', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02765.DUP_767ab984.WXS.T.hg38 C3N-02765 PDA WXS tumor CPT0184450055 3aa9c329-5382-4d4c-86a2-1f313124b4bb_wxs_gdc_realn.bam 37976633564 BAM harmonized CPTAC3 affe7493-8ec2-48f2-8d77-6684ce189f20 e251a0de335dc73fb679ef208ab6ee2b { 'aliquot_tag': 'DUP_767ab984', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02765.DUP_96d584b7.WXS.N C3N-02765 PDA WXS blood_normal CPT0184500002 CPT0184500002.WholeExome.RP-1303.bam 25531276256 BAM aligned CPTAC3 4f8fcbb3-89f2-47f6-9315-d8aa83bfe825 0e03bda4395f17a664cd041d978737bc { 'aliquot_tag': 'DUP_96d584b7', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02765.DUP_96d584b7.WXS.N.hg38 C3N-02765 PDA WXS blood_normal CPT0184500002 0a191209-9e23-48d3-b91e-ca049670f43e_wxs_gdc_realn.bam 36624758075 BAM harmonized CPTAC3 f23b9dea-98a3-4d7a-ae94-4d206805a687 b79529c5600369a397e76bea4010e58d { 'aliquot_tag': 'DUP_96d584b7', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02765.DUP_9f191cb1.WXS.T C3N-02765 PDA WXS tumor CPT0184450053 CPT0184450053.WholeExome.RP-1303.bam 26075201852 BAM aligned CPTAC3 01affcd9-9410-41e9-9f30-f80528dca801 5aa29dbd30e8cdb0250acfa8f81f0c7f { 'aliquot_tag': 'DUP_9f191cb1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02765.DUP_9f191cb1.WXS.T.hg38 C3N-02765 PDA WXS tumor CPT0184450053 b6d39075-48b8-4eff-8838-f4cf2976885d_wxs_gdc_realn.bam 35954402673 BAM harmonized CPTAC3 4bdd173e-8229-40d7-80f9-2dd4b7d63b71 7cd84a4b31f25547a825ae7a936aa512 { 'aliquot_tag': 'DUP_9f191cb1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3N-02765.RNA-Seq.R1_L001.T C3N-02765 PDA RNA-Seq tumor CPT0184450060 220126_UNC32-K00270_0314_AHMVJ7BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3329241887 FASTQ R1_L001 unaligned CPTAC3 838bb493-b2e5-4f62-975e-f6ea4ea8eee6 460e6df0617834576ad02e6bfaf31bcb { 'aliquot_tag': 'ALQ_2d3d1ec8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02765.RNA-Seq.R1_L004.T C3N-02765 PDA RNA-Seq tumor CPT0184450062 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 4010817260 FASTQ R1_L004 unaligned CPTAC3 53cea683-4bc3-49f3-9163-30156838864b 287aefce94294ffa64aee31ea018adc6 { 'aliquot_tag': 'ALQ_c3337fe4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02765.RNA-Seq.R1_L005.A C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 220114_UNC32-K00270_0310_AHMWT5BBXY_GACCTGAA-TTGGTGAG_S15_L005_R1_001.fastq.gz 4512545058 FASTQ R1_L005 unaligned CPTAC3 0cff2469-c2bc-417b-b5ed-6cd331559f9f fd8e36c54ad376c6f2e4be5f6a694824 { 'aliquot_tag': 'ALQ_f9e4f171', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02765.RNA-Seq.R2_L001.T C3N-02765 PDA RNA-Seq tumor CPT0184450060 220126_UNC32-K00270_0314_AHMVJ7BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 3985436345 FASTQ R2_L001 unaligned CPTAC3 47d05475-2278-4844-81bb-4a30b2cbd3cf a3151146ba3d4dc26c5296d123b358b8 { 'aliquot_tag': 'ALQ_2d3d1ec8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02765.RNA-Seq.R2_L004.T C3N-02765 PDA RNA-Seq tumor CPT0184450062 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 4530727151 FASTQ R2_L004 unaligned CPTAC3 2b3616e5-6792-4b8a-9bb2-d2e6cb2b38f3 87a340e152c6d043975898d42653f804 { 'aliquot_tag': 'ALQ_c3337fe4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02765.RNA-Seq.R2_L005.A C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 220114_UNC32-K00270_0310_AHMWT5BBXY_GACCTGAA-TTGGTGAG_S15_L005_R2_001.fastq.gz 4859544750 FASTQ R2_L005 unaligned CPTAC3 916ae392-05d2-4a2d-9b3a-70b0c6d281c4 934d4cc66b3eb9ed7d13eedea83e07b6 { 'aliquot_tag': 'ALQ_f9e4f171', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02765.DUP_c3337fe4.RNA-Seq.chimeric.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450062 89892806-5178-4fb4-8d41-8ceedf934228.rna_seq.chimeric.gdc_realn.bam 373975523 BAM chimeric harmonized CPTAC3 c06416dd-74f8-4251-9488-6a0e004f694f 3482850a3e6954aa47c188f9f45f3edc { 'aliquot_tag': 'DUP_c3337fe4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02765.DUP_c3337fe4.RNA-Seq.genomic.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450062 89892806-5178-4fb4-8d41-8ceedf934228.rna_seq.genomic.gdc_realn.bam 9949122407 BAM genomic harmonized CPTAC3 a2723a26-d0a3-41ef-9036-d45796d3a4b2 ee748db2a8ee7bcde92a7b75b6359379 { 'aliquot_tag': 'DUP_c3337fe4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02765.DUP_c3337fe4.RNA-Seq.R1_L004.T C3N-02765 PDA RNA-Seq tumor CPT0184450062 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGCATTCT-CTAGCTTG_S15_L004_R1_001.fastq.gz 4010817260 FASTQ R1_L004 unaligned CPTAC3 53cea683-4bc3-49f3-9163-30156838864b 287aefce94294ffa64aee31ea018adc6 { 'aliquot_tag': 'DUP_c3337fe4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L004' } +C3N-02765.DUP_c3337fe4.RNA-Seq.R2_L004.T C3N-02765 PDA RNA-Seq tumor CPT0184450062 220126_UNC32-K00270_0314_AHMVJ7BBXY_GGCATTCT-CTAGCTTG_S15_L004_R2_001.fastq.gz 4530727151 FASTQ R2_L004 unaligned CPTAC3 2b3616e5-6792-4b8a-9bb2-d2e6cb2b38f3 87a340e152c6d043975898d42653f804 { 'aliquot_tag': 'DUP_c3337fe4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L004' } +C3N-02765.DUP_c3337fe4.RNA-Seq.transcriptome.T.hg38 C3N-02765 PDA RNA-Seq tumor CPT0184450062 89892806-5178-4fb4-8d41-8ceedf934228.rna_seq.transcriptome.gdc_realn.bam 9716651789 BAM transcriptome harmonized CPTAC3 fcafead0-f9fe-42e2-b7c8-f301ad62a2f2 fc8566744bfb65410fa4437630ecacc4 { 'aliquot_tag': 'DUP_c3337fe4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02765.DUP_f9e4f171.RNA-Seq.chimeric.A.hg38 C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 4b982eb5-dd33-4562-8945-7540c7c85dfd.rna_seq.chimeric.gdc_realn.bam 357842011 BAM chimeric harmonized CPTAC3 ef0952c0-5a50-49d9-bf4e-095c71bb7250 a21e84e381c982ad70543679c38e00c0 { 'aliquot_tag': 'DUP_f9e4f171', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02765.DUP_f9e4f171.RNA-Seq.genomic.A.hg38 C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 4b982eb5-dd33-4562-8945-7540c7c85dfd.rna_seq.genomic.gdc_realn.bam 10610949083 BAM genomic harmonized CPTAC3 568f0d83-5776-4b4c-894c-b618a33ea844 f51358a67f6b30d4585252aac469cce5 { 'aliquot_tag': 'DUP_f9e4f171', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02765.DUP_f9e4f171.RNA-Seq.R1_L005.A C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 220114_UNC32-K00270_0310_AHMWT5BBXY_GACCTGAA-TTGGTGAG_S15_L005_R1_001.fastq.gz 4512545058 FASTQ R1_L005 unaligned CPTAC3 0cff2469-c2bc-417b-b5ed-6cd331559f9f fd8e36c54ad376c6f2e4be5f6a694824 { 'aliquot_tag': 'DUP_f9e4f171', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3N-02765.DUP_f9e4f171.RNA-Seq.R2_L005.A C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 220114_UNC32-K00270_0310_AHMWT5BBXY_GACCTGAA-TTGGTGAG_S15_L005_R2_001.fastq.gz 4859544750 FASTQ R2_L005 unaligned CPTAC3 916ae392-05d2-4a2d-9b3a-70b0c6d281c4 934d4cc66b3eb9ed7d13eedea83e07b6 { 'aliquot_tag': 'DUP_f9e4f171', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3N-02765.DUP_f9e4f171.RNA-Seq.transcriptome.A.hg38 C3N-02765 PDA RNA-Seq tissue_normal CPT0184460032 4b982eb5-dd33-4562-8945-7540c7c85dfd.rna_seq.transcriptome.gdc_realn.bam 12291562333 BAM transcriptome harmonized CPTAC3 e3750c68-9520-474f-9896-30d42bc5274b 52f38701d8eaf2bc05c1c429e3be8bb1 { 'aliquot_tag': 'DUP_f9e4f171', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02768.MethArray.Green.A C3N-02768 PDA Methylation Array tissue_normal CPT0207990007 203561450106_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 49258024-95b7-4330-a311-befb587a75c7 a6bc4e8856db96200598f29b8c3a695a { 'aliquot_tag': 'ALQ_47edefdf', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02768.MethArray.Green.T C3N-02768 PDA Methylation Array tumor CPT0207980008 203561450027_R01C01_Grn.idat 13676221 IDAT Green NA CPTAC3 c7fb07b5-b1f8-4217-ad32-97e5e3787788 ec02ce59cdb9f077de9e219fd90f445b { 'aliquot_tag': 'ALQ_ea32dbfe', 'gdc_sample_type': 'Primary Tumor' } C3N-02768.MethArray.Red.A C3N-02768 PDA Methylation Array tissue_normal CPT0207990007 203561450106_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 795efa34-5e8b-4459-8eca-bf7a61714855 a0ce30ecb5fc6d1d31914f0228d90fd2 { 'aliquot_tag': 'ALQ_47edefdf', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -32841,12 +35064,12 @@ C3N-02768.miRNA-Seq.T C3N-02768 PDA miRNA-Seq tumor CPT0207980011 190712_UNC32-K C3N-02768.miRNA-Seq.T.hg38 C3N-02768 PDA miRNA-Seq tumor CPT0207980011 79a919a6-53da-41e0-8030-b4945f1a8143_mirnaseq_gdc_realn.bam 195297723 BAM harmonized CPTAC3 c369335b-8591-4181-9f67-b5a6951dc60d f2200fd0365a26836b3de0083b0cffa2 { 'aliquot_tag': 'ALQ_8af5521b', 'gdc_sample_type': 'Primary Tumor' } C3N-02768.RNA-Seq.chimeric.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 28d06754-1437-4388-bee4-30d44dfbf246.rna_seq.chimeric.gdc_realn.bam 39850045 BAM chimeric harmonized CPTAC3 1a49b0e8-206a-4f24-8f0a-44c89b00a93c 57f0b69c29ca35fa3b826d96eb6dae5e { 'aliquot_tag': 'ALQ_c0924b3d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02768.RNA-Seq.chimeric.T.hg38 C3N-02768 PDA RNA-Seq tumor CPT0207980011 24b69855-2751-4571-885d-2da06dce24f5.rna_seq.chimeric.gdc_realn.bam 30641190 BAM chimeric harmonized CPTAC3 45ff964e-921a-410c-a822-e2952db19653 b29199f604baf4a6021982d2d5d0a697 { 'aliquot_tag': 'ALQ_8af5521b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02768.RNA-Seq.genomic.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 28d06754-1437-4388-bee4-30d44dfbf246.rna_seq.genomic.gdc_realn.bam 10142194346 BAM genomic harmonized CPTAC3 58e47fc3-f61a-4e79-a94d-84f31895736f 91fadb6aaa7b9f0abcd45ac810d6131f { 'aliquot_tag': 'ALQ_c0924b3d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02768.RNA-Seq.genomic.T.hg38 C3N-02768 PDA RNA-Seq tumor CPT0207980011 24b69855-2751-4571-885d-2da06dce24f5.rna_seq.genomic.gdc_realn.bam 8514757173 BAM genomic harmonized CPTAC3 6bb5bc82-84ba-458f-9007-6067c9cc954e a13b87cb1d9371f6cee4df69d32b2a08 { 'aliquot_tag': 'ALQ_8af5521b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02768.RNA-Seq.R1_L001.T C3N-02768 PDA RNA-Seq tumor CPT0207980011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGAATAT-TCTCATTC_S3_L001_R1_001.fastq.gz 4050847238 FASTQ R1_L001 unaligned CPTAC3 4c83b96a-e1bc-4db8-a84e-36e8b1b4b7d5 872e23c5fb089ff1e1786e8ffb2dac14 { 'aliquot_tag': 'ALQ_8af5521b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02768.RNA-Seq.R1_L005.A C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCCAACGC-TTGGACTT_S19_L005_R1_001.fastq.gz 4770279436 FASTQ R1_L005 unaligned CPTAC3 4e176a56-9f2e-48a9-a58d-e421acfdaa26 c6738b708a5e86d561ed7cab26765dc9 { 'aliquot_tag': 'ALQ_c0924b3d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02768.RNA-Seq.R2_L001.T C3N-02768 PDA RNA-Seq tumor CPT0207980011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGAATAT-TCTCATTC_S3_L001_R2_001.fastq.gz 4337524815 FASTQ R2_L001 unaligned CPTAC3 2b189e60-6209-49cf-8fca-7760c35b17fc d8719a46df4bce0268477daf5255c0e4 { 'aliquot_tag': 'ALQ_8af5521b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02768.RNA-Seq.R2_L005.A C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCCAACGC-TTGGACTT_S19_L005_R2_001.fastq.gz 5361032393 FASTQ R2_L005 unaligned CPTAC3 bc6b55e2-71e6-4ac3-a02b-764326cc2f3f 3b9c34088d8ca805a2c5afd87711a4ae { 'aliquot_tag': 'ALQ_c0924b3d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02768.RNA-Seq.genomic.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 28d06754-1437-4388-bee4-30d44dfbf246.rna_seq.genomic.gdc_realn.bam 10142194346 BAM genomic harmonized CPTAC3 0fca3ff8-76b6-4a80-ac71-e8ae33196cb0 91fadb6aaa7b9f0abcd45ac810d6131f { 'aliquot_tag': 'ALQ_c0924b3d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02768.RNA-Seq.genomic.T.hg38 C3N-02768 PDA RNA-Seq tumor CPT0207980011 24b69855-2751-4571-885d-2da06dce24f5.rna_seq.genomic.gdc_realn.bam 8514757173 BAM genomic harmonized CPTAC3 eb603f25-beae-493d-a6b2-2d535d99d70b a13b87cb1d9371f6cee4df69d32b2a08 { 'aliquot_tag': 'ALQ_8af5521b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02768.RNA-Seq.R1_L001.T C3N-02768 PDA RNA-Seq tumor CPT0207980011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGAATAT-TCTCATTC_S3_L001_R1_001.fastq.gz 4050847238 FASTQ R1_L001 unaligned CPTAC3 4c83b96a-e1bc-4db8-a84e-36e8b1b4b7d5 872e23c5fb089ff1e1786e8ffb2dac14 { 'aliquot_tag': 'ALQ_8af5521b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02768.RNA-Seq.R1_L005.A C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCCAACGC-TTGGACTT_S19_L005_R1_001.fastq.gz 4770279436 FASTQ R1_L005 unaligned CPTAC3 4e176a56-9f2e-48a9-a58d-e421acfdaa26 c6738b708a5e86d561ed7cab26765dc9 { 'aliquot_tag': 'ALQ_c0924b3d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02768.RNA-Seq.R2_L001.T C3N-02768 PDA RNA-Seq tumor CPT0207980011 190621_UNC32-K00270_0185_BH7G72BBXY_GTGAATAT-TCTCATTC_S3_L001_R2_001.fastq.gz 4337524815 FASTQ R2_L001 unaligned CPTAC3 2b189e60-6209-49cf-8fca-7760c35b17fc d8719a46df4bce0268477daf5255c0e4 { 'aliquot_tag': 'ALQ_8af5521b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02768.RNA-Seq.R2_L005.A C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCCAACGC-TTGGACTT_S19_L005_R2_001.fastq.gz 5361032393 FASTQ R2_L005 unaligned CPTAC3 bc6b55e2-71e6-4ac3-a02b-764326cc2f3f 3b9c34088d8ca805a2c5afd87711a4ae { 'aliquot_tag': 'ALQ_c0924b3d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-02768.RNA-Seq.transcriptome.A.hg38 C3N-02768 PDA RNA-Seq tissue_normal CPT0207990010 28d06754-1437-4388-bee4-30d44dfbf246.rna_seq.transcriptome.gdc_realn.bam 11582307489 BAM transcriptome harmonized CPTAC3 607c550f-c958-4300-a999-6205aa41ad55 267ab1c0873eb518f3f2d26fd61cd79c { 'aliquot_tag': 'ALQ_c0924b3d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02768.RNA-Seq.transcriptome.T.hg38 C3N-02768 PDA RNA-Seq tumor CPT0207980011 24b69855-2751-4571-885d-2da06dce24f5.rna_seq.transcriptome.gdc_realn.bam 11873706716 BAM transcriptome harmonized CPTAC3 a827030b-a617-477e-9426-9a1edd1aa98d 099a70f3d94c8f7aa169896de55c6a2e { 'aliquot_tag': 'ALQ_8af5521b', 'gdc_sample_type': 'Primary Tumor' } C3N-02768.WGS.N C3N-02768 PDA WGS blood_normal CPT0208030002 CPT0208030002.WholeGenome.RP-1303.bam 70333882079 BAM aligned CPTAC3 a057c24b-90fc-47dc-80ea-94dc37012f76 06bbc1f49784e41595681b7221270053 { 'aliquot_tag': 'ALQ_ac7022d0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -32864,12 +35087,12 @@ C3N-02769.MethArray.Red.T C3N-02769 GBM Methylation Array tumor CPT0205570009 20 C3N-02769.miRNA-Seq.T C3N-02769 GBM miRNA-Seq tumor CPT0205570006 181219_UNC31-K00269_0173_BHYGJJBBXX_CGTACG_S48_L003_R1_001.unaln.bam 254035039 BAM unaligned CPTAC3 c09925f2-998c-4ff4-a6dd-c00c71cdf053 88df83404114a47dde7105ed942c9393 { 'aliquot_tag': 'ALQ_6f87b07a', 'gdc_sample_type': 'Primary Tumor' } C3N-02769.miRNA-Seq.T.hg38 C3N-02769 GBM miRNA-Seq tumor CPT0205570006 d08d339d-97c4-4ced-b844-de117453286a_mirnaseq_gdc_realn.bam 286581052 BAM harmonized CPTAC3 c701e731-542a-4666-88a6-e9938e05f79b acbddeef25ec5346ede05fc6e6849f73 { 'aliquot_tag': 'ALQ_6f87b07a', 'gdc_sample_type': 'Primary Tumor' } C3N-02769.RNA-Seq.chimeric.T.hg38 C3N-02769 GBM RNA-Seq tumor CPT0205570006 4b05fe2e-87b4-4a0e-9d8f-bca88c29b58e.rna_seq.chimeric.gdc_realn.bam 111023695 BAM chimeric harmonized CPTAC3 63ceaa28-12fc-478a-b04d-3ca175d56ee7 a934ef2794dce3524ea8371b0e79b984 { 'aliquot_tag': 'ALQ_6f87b07a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02769.RNA-Seq.genomic.T.hg38 C3N-02769 GBM RNA-Seq tumor CPT0205570006 4b05fe2e-87b4-4a0e-9d8f-bca88c29b58e.rna_seq.genomic.gdc_realn.bam 8108963815 BAM genomic harmonized CPTAC3 a189b183-f0f2-4558-8f01-da60a44231f1 986791f8e3ad8c63a181bbcf6cfdd4c2 { 'aliquot_tag': 'ALQ_6f87b07a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02769.RNA-Seq.R1_L007.T C3N-02769 GBM RNA-Seq tumor CPT0205570006 181002_UNC31-K00269_0156_AHWN3HBBXX_GAGTGG_S32_L007_R1_001.fastq.gz 3703368298 FASTQ R1_L007 unaligned CPTAC3 cbcec998-f2ef-4566-bf1d-1ba58e3ec41b d3d55f7bd4c11dda8c93673bf83786fc { 'aliquot_tag': 'ALQ_6f87b07a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02769.RNA-Seq.R2_L007.T C3N-02769 GBM RNA-Seq tumor CPT0205570006 181002_UNC31-K00269_0156_AHWN3HBBXX_GAGTGG_S32_L007_R2_001.fastq.gz 3963422980 FASTQ R2_L007 unaligned CPTAC3 40725a01-9dfe-4cc9-b8fd-93e06c474763 4d1b77109b9e88659ce092f3169e6a69 { 'aliquot_tag': 'ALQ_6f87b07a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02769.RNA-Seq.genomic.T.hg38 C3N-02769 GBM RNA-Seq tumor CPT0205570006 4b05fe2e-87b4-4a0e-9d8f-bca88c29b58e.rna_seq.genomic.gdc_realn.bam 8108963815 BAM genomic harmonized CPTAC3 adda3032-4354-46dc-9100-fbec3fdecd12 986791f8e3ad8c63a181bbcf6cfdd4c2 { 'aliquot_tag': 'ALQ_6f87b07a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02769.RNA-Seq.R1_L007.T C3N-02769 GBM RNA-Seq tumor CPT0205570006 181002_UNC31-K00269_0156_AHWN3HBBXX_GAGTGG_S32_L007_R1_001.fastq.gz 3703368298 FASTQ R1_L007 unaligned CPTAC3 cbcec998-f2ef-4566-bf1d-1ba58e3ec41b d3d55f7bd4c11dda8c93673bf83786fc { 'aliquot_tag': 'ALQ_6f87b07a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02769.RNA-Seq.R2_L007.T C3N-02769 GBM RNA-Seq tumor CPT0205570006 181002_UNC31-K00269_0156_AHWN3HBBXX_GAGTGG_S32_L007_R2_001.fastq.gz 3963422980 FASTQ R2_L007 unaligned CPTAC3 40725a01-9dfe-4cc9-b8fd-93e06c474763 4d1b77109b9e88659ce092f3169e6a69 { 'aliquot_tag': 'ALQ_6f87b07a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02769.RNA-Seq.transcriptome.T.hg38 C3N-02769 GBM RNA-Seq tumor CPT0205570006 4b05fe2e-87b4-4a0e-9d8f-bca88c29b58e.rna_seq.transcriptome.gdc_realn.bam 10847506015 BAM transcriptome harmonized CPTAC3 062cfafb-e4c4-4e63-998b-0e1aad22c887 5438c9f764cc085502e964fbfc7aeb2d { 'aliquot_tag': 'ALQ_6f87b07a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02769.scRNA-Seq.R1_L003.T C3N-02769 GBM scRNA-Seq tumor CPT0205570014 20200615_WUSTL_CPT0205570014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L003_R1_001.fastq.gz 11929454541 FASTQ R1_L003 unaligned CPTAC3 2f89a031-595d-48dd-9a51-370d57ac9c6e ff970a9e16d1f4cb6d91cf1c78a439bc { 'aliquot_tag': 'ALQ_9892e017', 'gdc_sample_type': 'Primary Tumor' } -C3N-02769.scRNA-Seq.R2_L003.T C3N-02769 GBM scRNA-Seq tumor CPT0205570014 20200615_WUSTL_CPT0205570014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L003_R2_001.fastq.gz 27196649078 FASTQ R2_L003 unaligned CPTAC3 cba6562b-14a2-4f4c-b4be-0777a59e6481 ab57afb2890b2999b9cb429b48cefac9 { 'aliquot_tag': 'ALQ_9892e017', 'gdc_sample_type': 'Primary Tumor' } +C3N-02769.scRNA-Seq.R1_L003.T C3N-02769 GBM scRNA-Seq tumor CPT0205570014 20200615_WUSTL_CPT0205570014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L003_R1_001.fastq.gz 11929454541 FASTQ R1_L003 unaligned CPTAC3 2f89a031-595d-48dd-9a51-370d57ac9c6e ff970a9e16d1f4cb6d91cf1c78a439bc { 'aliquot_tag': 'ALQ_9892e017', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02769.scRNA-Seq.R2_L003.T C3N-02769 GBM scRNA-Seq tumor CPT0205570014 20200615_WUSTL_CPT0205570014_AATAATGG-CCAGGGCA-TGCCTCAT-GTGTCATC_S1_L003_R2_001.fastq.gz 27196649078 FASTQ R2_L003 unaligned CPTAC3 cba6562b-14a2-4f4c-b4be-0777a59e6481 ab57afb2890b2999b9cb429b48cefac9 { 'aliquot_tag': 'ALQ_9892e017', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-02769.scRNA-Seq.T.hg38 C3N-02769 GBM scRNA-Seq tumor CPT0205570014 possorted_genome_bam.bam 29968048497 BAM harmonized CPTAC3 9fb3b674-788a-4e5b-aca2-1aa637f49ecc 02a4a37e036b58d15a5feaa3570a5d37 { 'aliquot_tag': 'ALQ_9892e017', 'gdc_sample_type': 'Primary Tumor' } C3N-02769.WGS.N C3N-02769 GBM WGS blood_normal CPT0205620002 CPT0205620002.WholeGenome.RP-1303.bam 64625748534 BAM aligned CPTAC3 86e332dd-384a-40f4-b6a1-691c9df72b2f 6a6c7a419bd96bb50105963b763d9bc7 { 'aliquot_tag': 'ALQ_269e89bd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02769.WGS.N.hg38 C3N-02769 GBM WGS blood_normal CPT0205620002 676c0ccc-0273-4827-8d9a-4bf5e7af912c_wgs_gdc_realn.bam 93747243868 BAM harmonized CPTAC3 4c86fc2d-d1dc-44e3-8a3f-a6c8a0ec4811 f5e5e4542f87e7bef7fdd56270052ac1 { 'aliquot_tag': 'ALQ_269e89bd', 'gdc_sample_type': 'Blood Derived Normal' } @@ -32885,8 +35108,8 @@ C3N-02770.miRNA-Seq.T C3N-02770 GBM miRNA-Seq tumor CPT0205670010 190228_UNC32-K C3N-02770.miRNA-Seq.T.hg38 C3N-02770 GBM miRNA-Seq tumor CPT0205670010 dbe3bd7c-a40c-430e-800c-210cf7e14ade_mirnaseq_gdc_realn.bam 230870552 BAM harmonized CPTAC3 fa798133-34e0-4e14-8132-b78d5a4ef489 6972de2872e14549eae94dd82d4ccf81 { 'aliquot_tag': 'ALQ_196b56a0', 'gdc_sample_type': 'Primary Tumor' } C3N-02770.RNA-Seq.chimeric.T.hg38 C3N-02770 GBM RNA-Seq tumor CPT0205670010 50cede27-a601-4fea-9a86-99c2ca67b1f5.rna_seq.chimeric.gdc_realn.bam 37388444 BAM chimeric harmonized CPTAC3 2c90f971-f9b8-474c-a74c-dd68280e2146 097854ff6caea754923d28d3621ae52c { 'aliquot_tag': 'ALQ_196b56a0', 'gdc_sample_type': 'Primary Tumor' } C3N-02770.RNA-Seq.genomic.T.hg38 C3N-02770 GBM RNA-Seq tumor CPT0205670010 50cede27-a601-4fea-9a86-99c2ca67b1f5.rna_seq.genomic.gdc_realn.bam 7634839395 BAM genomic harmonized CPTAC3 fed3fb5b-d5ea-4bc0-9912-29fbf60cc498 e00ab6fdb3a2422a3c17f4f8b4ec7ee4 { 'aliquot_tag': 'ALQ_196b56a0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02770.RNA-Seq.R1_L004.T C3N-02770 GBM RNA-Seq tumor CPT0205670010 180918_UNC31-K00269_0152_AHWNJTBBXX_TGACCA_S16_L004_R1_001.fastq.gz 3798161751 FASTQ R1_L004 unaligned CPTAC3 2f596c58-f44c-4a43-b9f7-f3caad62afda fbf29e304ca783feb67dab5805ad482d { 'aliquot_tag': 'ALQ_196b56a0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02770.RNA-Seq.R2_L004.T C3N-02770 GBM RNA-Seq tumor CPT0205670010 180918_UNC31-K00269_0152_AHWNJTBBXX_TGACCA_S16_L004_R2_001.fastq.gz 3879586459 FASTQ R2_L004 unaligned CPTAC3 30939cd9-df0f-496b-9e3e-72413f3cd919 cba4fab46f5d92a57923b5388f41d98e { 'aliquot_tag': 'ALQ_196b56a0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02770.RNA-Seq.R1_L004.T C3N-02770 GBM RNA-Seq tumor CPT0205670010 180918_UNC31-K00269_0152_AHWNJTBBXX_TGACCA_S16_L004_R1_001.fastq.gz 3798161751 FASTQ R1_L004 unaligned CPTAC3 2f596c58-f44c-4a43-b9f7-f3caad62afda fbf29e304ca783feb67dab5805ad482d { 'aliquot_tag': 'ALQ_196b56a0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02770.RNA-Seq.R2_L004.T C3N-02770 GBM RNA-Seq tumor CPT0205670010 180918_UNC31-K00269_0152_AHWNJTBBXX_TGACCA_S16_L004_R2_001.fastq.gz 3879586459 FASTQ R2_L004 unaligned CPTAC3 30939cd9-df0f-496b-9e3e-72413f3cd919 cba4fab46f5d92a57923b5388f41d98e { 'aliquot_tag': 'ALQ_196b56a0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-02770.RNA-Seq.transcriptome.T.hg38 C3N-02770 GBM RNA-Seq tumor CPT0205670010 50cede27-a601-4fea-9a86-99c2ca67b1f5.rna_seq.transcriptome.gdc_realn.bam 10670501385 BAM transcriptome harmonized CPTAC3 d1951494-85ed-4cb1-98bb-0321d1406421 991e17b652bc361e7b9ac188a7415269 { 'aliquot_tag': 'ALQ_196b56a0', 'gdc_sample_type': 'Primary Tumor' } C3N-02770.WGS.N C3N-02770 GBM WGS blood_normal CPT0205730002 CPT0205730002.WholeGenome.RP-1303.bam 57041246095 BAM aligned CPTAC3 73c2d70d-5406-4628-a331-40bc2f68c62c 54545d285bf85c062a05754767a64b0d { 'aliquot_tag': 'ALQ_d0a273a8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02770.WGS.N.hg38 C3N-02770 GBM WGS blood_normal CPT0205730002 d65d3c63-2d38-4f5d-bc55-24ecea87bd4a_wgs_gdc_realn.bam 82940467860 BAM harmonized CPTAC3 2e5b6969-dfbf-4b57-8d15-d7d1fe9a4e85 5f936c8b0afbb558128c934e8617fadd { 'aliquot_tag': 'ALQ_d0a273a8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -32901,9 +35124,9 @@ C3N-02782.MethArray.Red.T C3N-02782 GBM Methylation Array tumor CPT0205780009 20 C3N-02782.miRNA-Seq.T C3N-02782 GBM miRNA-Seq tumor CPT0205780006 181219_UNC31-K00269_0173_BHYGJJBBXX_GAGTGG_S22_L003_R1_001.unaln.bam 294393905 BAM unaligned CPTAC3 63ab6eff-607c-43e8-9149-c597fbac7b9b 82aa14911adc060b91d5ca7c074fb422 { 'aliquot_tag': 'ALQ_a01f86a0', 'gdc_sample_type': 'Primary Tumor' } C3N-02782.miRNA-Seq.T.hg38 C3N-02782 GBM miRNA-Seq tumor CPT0205780006 a4603ea2-4ce7-42ac-be27-f80bc0f56f16_mirnaseq_gdc_realn.bam 325902182 BAM harmonized CPTAC3 39c4b637-e6fa-4b64-a64a-0d60f34a5463 a6f44fdb84e20e4e0ef782e2b1a958d0 { 'aliquot_tag': 'ALQ_a01f86a0', 'gdc_sample_type': 'Primary Tumor' } C3N-02782.RNA-Seq.chimeric.T.hg38 C3N-02782 GBM RNA-Seq tumor CPT0205780006 74b09f86-ab8e-4486-a6e5-35dc41a7dd63.rna_seq.chimeric.gdc_realn.bam 131933571 BAM chimeric harmonized CPTAC3 5df271bc-bd87-46eb-a247-af68a5ea31b8 379f9a49c1ad3cdd8d9b1cad7b6668d6 { 'aliquot_tag': 'ALQ_a01f86a0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02782.RNA-Seq.genomic.T.hg38 C3N-02782 GBM RNA-Seq tumor CPT0205780006 74b09f86-ab8e-4486-a6e5-35dc41a7dd63.rna_seq.genomic.gdc_realn.bam 8310225994 BAM genomic harmonized CPTAC3 56412f30-8a8d-4947-95fb-cd85b1bbab06 d9e4bc7907864c198691bc37069b4055 { 'aliquot_tag': 'ALQ_a01f86a0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02782.RNA-Seq.R1_L007.T C3N-02782 GBM RNA-Seq tumor CPT0205780006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L007_R1_001.fastq.gz 3897476431 FASTQ R1_L007 unaligned CPTAC3 8d556ee9-fb15-4daf-a9c7-a9aa6ea0363c 06a27ad2266ae027ac3d120e4fb9726b { 'aliquot_tag': 'ALQ_a01f86a0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02782.RNA-Seq.R2_L007.T C3N-02782 GBM RNA-Seq tumor CPT0205780006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4236088268 FASTQ R2_L007 unaligned CPTAC3 4a3cbab9-db7b-4383-be3a-5bcc22259575 e560501f73f413304232d1486923b955 { 'aliquot_tag': 'ALQ_a01f86a0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02782.RNA-Seq.genomic.T.hg38 C3N-02782 GBM RNA-Seq tumor CPT0205780006 74b09f86-ab8e-4486-a6e5-35dc41a7dd63.rna_seq.genomic.gdc_realn.bam 8310225994 BAM genomic harmonized CPTAC3 2c91e52f-55d6-41bb-8f6b-e7e4a4744495 d9e4bc7907864c198691bc37069b4055 { 'aliquot_tag': 'ALQ_a01f86a0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02782.RNA-Seq.R1_L007.T C3N-02782 GBM RNA-Seq tumor CPT0205780006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L007_R1_001.fastq.gz 3897476431 FASTQ R1_L007 unaligned CPTAC3 8d556ee9-fb15-4daf-a9c7-a9aa6ea0363c 06a27ad2266ae027ac3d120e4fb9726b { 'aliquot_tag': 'ALQ_a01f86a0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02782.RNA-Seq.R2_L007.T C3N-02782 GBM RNA-Seq tumor CPT0205780006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L007_R2_001.fastq.gz 4236088268 FASTQ R2_L007 unaligned CPTAC3 4a3cbab9-db7b-4383-be3a-5bcc22259575 e560501f73f413304232d1486923b955 { 'aliquot_tag': 'ALQ_a01f86a0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02782.RNA-Seq.transcriptome.T.hg38 C3N-02782 GBM RNA-Seq tumor CPT0205780006 74b09f86-ab8e-4486-a6e5-35dc41a7dd63.rna_seq.transcriptome.gdc_realn.bam 11563450198 BAM transcriptome harmonized CPTAC3 476d11ee-feb9-40c5-a2ba-b9d9d5a50bd8 5ce31ab9ab318070d0b7d0a7f83c71d1 { 'aliquot_tag': 'ALQ_a01f86a0', 'gdc_sample_type': 'Primary Tumor' } C3N-02782.WGS.N C3N-02782 GBM WGS blood_normal CPT0205800002 CPT0205800002.WholeGenome.RP-1303.bam 61479019998 BAM aligned CPTAC3 2d9ca192-dc4e-4d54-b48e-38b8354cbdca 3e7c7bf839f22d0bb6742cb04a7f4e04 { 'aliquot_tag': 'ALQ_6654bbad', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02782.WGS.N.hg38 C3N-02782 GBM WGS blood_normal CPT0205800002 45512723-7706-4e43-aa40-d483af74b7a9_wgs_gdc_realn.bam 89558603666 BAM harmonized CPTAC3 5e3b93d6-8e8c-4fa4-89a1-004c6d032737 895400f14a600824f6b4ce3947a0a386 { 'aliquot_tag': 'ALQ_6654bbad', 'gdc_sample_type': 'Blood Derived Normal' } @@ -32918,12 +35141,12 @@ C3N-02783.MethArray.Red.T C3N-02783 GBM Methylation Array tumor CPT0205890009 20 C3N-02783.miRNA-Seq.T C3N-02783 GBM miRNA-Seq tumor CPT0205890006 181219_UNC31-K00269_0173_BHYGJJBBXX_GGTAGC_S23_L003_R1_001.unaln.bam 229328168 BAM unaligned CPTAC3 04fb82de-277b-491a-bc65-20fb25ddbae4 27ab2cc7f0ede0a5d7e77f580851a4e7 { 'aliquot_tag': 'ALQ_6c291dc5', 'gdc_sample_type': 'Primary Tumor' } C3N-02783.miRNA-Seq.T.hg38 C3N-02783 GBM miRNA-Seq tumor CPT0205890006 4902e5f2-7c34-4702-bfb7-b13f494510ab_mirnaseq_gdc_realn.bam 255907588 BAM harmonized CPTAC3 e45345a9-10bc-44a5-adb8-b121f2f0881d c53c35a9b556b989a931f887d4a44b5f { 'aliquot_tag': 'ALQ_6c291dc5', 'gdc_sample_type': 'Primary Tumor' } C3N-02783.RNA-Seq.chimeric.T.hg38 C3N-02783 GBM RNA-Seq tumor CPT0205890006 d6221d0f-b177-4380-a987-924dc5d1e99b.rna_seq.chimeric.gdc_realn.bam 80326276 BAM chimeric harmonized CPTAC3 71850072-1a7c-4529-81f7-b0b5bb5c57c0 af48fc05029252dea74ab931c394e62a { 'aliquot_tag': 'ALQ_6c291dc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02783.RNA-Seq.genomic.T.hg38 C3N-02783 GBM RNA-Seq tumor CPT0205890006 d6221d0f-b177-4380-a987-924dc5d1e99b.rna_seq.genomic.gdc_realn.bam 8915454516 BAM genomic harmonized CPTAC3 00d40583-1558-492c-82d4-e3a3cd91063a 6f552834369a4709e0f5d20d9a6abf25 { 'aliquot_tag': 'ALQ_6c291dc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02783.RNA-Seq.R1_L007.T C3N-02783 GBM RNA-Seq tumor CPT0205890006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATTCCT_S33_L007_R1_001.fastq.gz 4153563527 FASTQ R1_L007 unaligned CPTAC3 c3a28258-46f8-4363-98f0-72ce38f840c2 dbe09bf17d337a0f2c32b0b4a38b9d4f { 'aliquot_tag': 'ALQ_6c291dc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02783.RNA-Seq.R2_L007.T C3N-02783 GBM RNA-Seq tumor CPT0205890006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATTCCT_S33_L007_R2_001.fastq.gz 4420035565 FASTQ R2_L007 unaligned CPTAC3 300ad88a-1572-4def-8832-9972ddf4c133 22f30fcbe74b386b3d93b76034f43e7e { 'aliquot_tag': 'ALQ_6c291dc5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02783.RNA-Seq.genomic.T.hg38 C3N-02783 GBM RNA-Seq tumor CPT0205890006 d6221d0f-b177-4380-a987-924dc5d1e99b.rna_seq.genomic.gdc_realn.bam 8915454516 BAM genomic harmonized CPTAC3 1fb40b3e-6dcb-43a1-86ac-94b2cac02d75 6f552834369a4709e0f5d20d9a6abf25 { 'aliquot_tag': 'ALQ_6c291dc5', 'gdc_sample_type': 'Primary Tumor' } +C3N-02783.RNA-Seq.R1_L007.T C3N-02783 GBM RNA-Seq tumor CPT0205890006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATTCCT_S33_L007_R1_001.fastq.gz 4153563527 FASTQ R1_L007 unaligned CPTAC3 c3a28258-46f8-4363-98f0-72ce38f840c2 dbe09bf17d337a0f2c32b0b4a38b9d4f { 'aliquot_tag': 'ALQ_6c291dc5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02783.RNA-Seq.R2_L007.T C3N-02783 GBM RNA-Seq tumor CPT0205890006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATTCCT_S33_L007_R2_001.fastq.gz 4420035565 FASTQ R2_L007 unaligned CPTAC3 300ad88a-1572-4def-8832-9972ddf4c133 22f30fcbe74b386b3d93b76034f43e7e { 'aliquot_tag': 'ALQ_6c291dc5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02783.RNA-Seq.transcriptome.T.hg38 C3N-02783 GBM RNA-Seq tumor CPT0205890006 d6221d0f-b177-4380-a987-924dc5d1e99b.rna_seq.transcriptome.gdc_realn.bam 11971926251 BAM transcriptome harmonized CPTAC3 37791d6e-816c-4f15-b306-ccbdca90c586 645f824872212f2927472f607b8fcffb { 'aliquot_tag': 'ALQ_6c291dc5', 'gdc_sample_type': 'Primary Tumor' } -C3N-02783.scRNA-Seq.R1_L001.T C3N-02783 GBM scRNA-Seq tumor CPT0205890014 20200108_WUSTL_CPT0205890014_GAGGATCT-AGACCATA-TCCTGCGC-CTTATGAG_S3_L001_R1_001.fastq.gz 7681086081 FASTQ R1_L001 unaligned CPTAC3 98e869a4-4485-4e92-a24e-e3edf83fcc1c 2b1ea372edff2273cf2f97521975fa6a { 'aliquot_tag': 'ALQ_9b3c4da8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02783.scRNA-Seq.R2_L001.T C3N-02783 GBM scRNA-Seq tumor CPT0205890014 20200108_WUSTL_CPT0205890014_GAGGATCT-AGACCATA-TCCTGCGC-CTTATGAG_S3_L001_R2_001.fastq.gz 18013082534 FASTQ R2_L001 unaligned CPTAC3 1c44a09d-a35d-404a-8bba-95d59425b678 81e1e82cd0646be44b47804be228f444 { 'aliquot_tag': 'ALQ_9b3c4da8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02783.scRNA-Seq.R1_L001.T C3N-02783 GBM scRNA-Seq tumor CPT0205890014 20200108_WUSTL_CPT0205890014_GAGGATCT-AGACCATA-TCCTGCGC-CTTATGAG_S3_L001_R1_001.fastq.gz 7681086081 FASTQ R1_L001 unaligned CPTAC3 98e869a4-4485-4e92-a24e-e3edf83fcc1c 2b1ea372edff2273cf2f97521975fa6a { 'aliquot_tag': 'ALQ_9b3c4da8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02783.scRNA-Seq.R2_L001.T C3N-02783 GBM scRNA-Seq tumor CPT0205890014 20200108_WUSTL_CPT0205890014_GAGGATCT-AGACCATA-TCCTGCGC-CTTATGAG_S3_L001_R2_001.fastq.gz 18013082534 FASTQ R2_L001 unaligned CPTAC3 1c44a09d-a35d-404a-8bba-95d59425b678 81e1e82cd0646be44b47804be228f444 { 'aliquot_tag': 'ALQ_9b3c4da8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-02783.scRNA-Seq.T.hg38 C3N-02783 GBM scRNA-Seq tumor CPT0205890014 possorted_genome_bam.bam 22655123367 BAM harmonized CPTAC3 134211a0-bc5e-4b42-ab4f-425517ca00dc 0899977c5ebcd214aa05c4f35e687faf { 'aliquot_tag': 'ALQ_9b3c4da8', 'gdc_sample_type': 'Primary Tumor' } C3N-02783.WGS.N C3N-02783 GBM WGS blood_normal CPT0205950002 CPT0205950002.WholeGenome.RP-1303.bam 54585294438 BAM aligned CPTAC3 be13a90f-4a0d-4e5f-aaa6-08f583b3f1eb f2b00ea005f2bf9bd848dd5ca82d63a2 { 'aliquot_tag': 'ALQ_65e8e778', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02783.WGS.N.hg38 C3N-02783 GBM WGS blood_normal CPT0205950002 d3bee3fd-bd2d-4191-ac63-a1f864f33004_wgs_gdc_realn.bam 79064217342 BAM harmonized CPTAC3 0382203c-2b40-4e1c-ba95-a75bfc8347d2 83add3a85b665131dad313f70b44d23d { 'aliquot_tag': 'ALQ_65e8e778', 'gdc_sample_type': 'Blood Derived Normal' } @@ -32939,11 +35162,11 @@ C3N-02784.miRNA-Seq.T C3N-02784 GBM miRNA-Seq tumor CPT0206000010 190228_UNC32-K C3N-02784.miRNA-Seq.T.hg38 C3N-02784 GBM miRNA-Seq tumor CPT0206000010 22be7586-43ec-48f9-aa57-f0de1344df18_mirnaseq_gdc_realn.bam 310486920 BAM harmonized CPTAC3 023b51fa-6d3e-4d6e-8c6f-718390e32428 13a31bd6d86ffe2c57ab66d3e5c68300 { 'aliquot_tag': 'ALQ_4cfa7330', 'gdc_sample_type': 'Primary Tumor' } C3N-02784.RNA-Seq.chimeric.T.hg38 C3N-02784 GBM RNA-Seq tumor CPT0206000010 3f492a04-12ca-4dd8-a1ee-aac7d7fc838a.rna_seq.chimeric.gdc_realn.bam 37170440 BAM chimeric harmonized CPTAC3 f5a1bbaf-61a0-4a1d-af59-d1e8aeceb0f5 45825647b11fe773d187e67311964448 { 'aliquot_tag': 'ALQ_4cfa7330', 'gdc_sample_type': 'Primary Tumor' } C3N-02784.RNA-Seq.genomic.T.hg38 C3N-02784 GBM RNA-Seq tumor CPT0206000010 3f492a04-12ca-4dd8-a1ee-aac7d7fc838a.rna_seq.genomic.gdc_realn.bam 7858724464 BAM genomic harmonized CPTAC3 2eba58a6-82c6-4667-969d-b8e2a1f37fbc 393074f2ca1b730d2c9f6b528b1aa2ac { 'aliquot_tag': 'ALQ_4cfa7330', 'gdc_sample_type': 'Primary Tumor' } -C3N-02784.RNA-Seq.R1_L005.T C3N-02784 GBM RNA-Seq tumor CPT0206000010 180918_UNC31-K00269_0152_AHWNJTBBXX_ACAGTG_S3_L005_R1_001.fastq.gz 3693628695 FASTQ R1_L005 unaligned CPTAC3 94f26cd4-ffba-4908-ba59-695a852622d4 3469606b893c3f594e563bbabb0b5c2e { 'aliquot_tag': 'ALQ_4cfa7330', 'gdc_sample_type': 'Primary Tumor' } -C3N-02784.RNA-Seq.R2_L005.T C3N-02784 GBM RNA-Seq tumor CPT0206000010 180918_UNC31-K00269_0152_AHWNJTBBXX_ACAGTG_S3_L005_R2_001.fastq.gz 3845497765 FASTQ R2_L005 unaligned CPTAC3 e0b6edbc-145e-4aed-b3c0-64db111763c2 a1cca1ee5f0197d07d8c95b2f70e5987 { 'aliquot_tag': 'ALQ_4cfa7330', 'gdc_sample_type': 'Primary Tumor' } +C3N-02784.RNA-Seq.R1_L005.T C3N-02784 GBM RNA-Seq tumor CPT0206000010 180918_UNC31-K00269_0152_AHWNJTBBXX_ACAGTG_S3_L005_R1_001.fastq.gz 3693628695 FASTQ R1_L005 unaligned CPTAC3 94f26cd4-ffba-4908-ba59-695a852622d4 3469606b893c3f594e563bbabb0b5c2e { 'aliquot_tag': 'ALQ_4cfa7330', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02784.RNA-Seq.R2_L005.T C3N-02784 GBM RNA-Seq tumor CPT0206000010 180918_UNC31-K00269_0152_AHWNJTBBXX_ACAGTG_S3_L005_R2_001.fastq.gz 3845497765 FASTQ R2_L005 unaligned CPTAC3 e0b6edbc-145e-4aed-b3c0-64db111763c2 a1cca1ee5f0197d07d8c95b2f70e5987 { 'aliquot_tag': 'ALQ_4cfa7330', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-02784.RNA-Seq.transcriptome.T.hg38 C3N-02784 GBM RNA-Seq tumor CPT0206000010 3f492a04-12ca-4dd8-a1ee-aac7d7fc838a.rna_seq.transcriptome.gdc_realn.bam 11712215630 BAM transcriptome harmonized CPTAC3 ab4c1381-433a-4d1e-a7cc-feb6849f895f 0dceed5de80231f3e194f8a722bf5c9c { 'aliquot_tag': 'ALQ_4cfa7330', 'gdc_sample_type': 'Primary Tumor' } -C3N-02784.scRNA-Seq.R1_L003.T C3N-02784 GBM scRNA-Seq tumor CPT0206000015 20200610_WUSTL_CPT0206000015_TACTCTTC-CCTGTGCG-GGACACGT-ATGAGAAA_S5_L003_R1_001.fastq.gz 10247839581 FASTQ R1_L003 unaligned CPTAC3 82f470cd-a7c4-46dd-ad24-f6ef6ac2fb1f 5be38469d5926812ffec926b76323ee0 { 'aliquot_tag': 'ALQ_3c9087bf', 'gdc_sample_type': 'Primary Tumor' } -C3N-02784.scRNA-Seq.R2_L003.T C3N-02784 GBM scRNA-Seq tumor CPT0206000015 20200610_WUSTL_CPT0206000015_TACTCTTC-CCTGTGCG-GGACACGT-ATGAGAAA_S5_L003_R2_001.fastq.gz 24870065483 FASTQ R2_L003 unaligned CPTAC3 51ff95f6-0a5c-495d-b26c-10cf4f66e95f ed342986a988a6bb271887bd53cadbb4 { 'aliquot_tag': 'ALQ_3c9087bf', 'gdc_sample_type': 'Primary Tumor' } +C3N-02784.scRNA-Seq.R1_L003.T C3N-02784 GBM scRNA-Seq tumor CPT0206000015 20200610_WUSTL_CPT0206000015_TACTCTTC-CCTGTGCG-GGACACGT-ATGAGAAA_S5_L003_R1_001.fastq.gz 10247839581 FASTQ R1_L003 unaligned CPTAC3 82f470cd-a7c4-46dd-ad24-f6ef6ac2fb1f 5be38469d5926812ffec926b76323ee0 { 'aliquot_tag': 'ALQ_3c9087bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02784.scRNA-Seq.R2_L003.T C3N-02784 GBM scRNA-Seq tumor CPT0206000015 20200610_WUSTL_CPT0206000015_TACTCTTC-CCTGTGCG-GGACACGT-ATGAGAAA_S5_L003_R2_001.fastq.gz 24870065483 FASTQ R2_L003 unaligned CPTAC3 51ff95f6-0a5c-495d-b26c-10cf4f66e95f ed342986a988a6bb271887bd53cadbb4 { 'aliquot_tag': 'ALQ_3c9087bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-02784.scRNA-Seq.T.hg38 C3N-02784 GBM scRNA-Seq tumor CPT0206000015 possorted_genome_bam.bam 27855697509 BAM harmonized CPTAC3 4cc00a1b-6ee4-4520-a76e-94ea33e09889 de94c65f41e9cb0b966922dbf278eea2 { 'aliquot_tag': 'ALQ_3c9087bf', 'gdc_sample_type': 'Primary Tumor' } C3N-02784.WGS.N C3N-02784 GBM WGS blood_normal CPT0206060002 CPT0206060002.WholeGenome.RP-1303.bam 59440566323 BAM aligned CPTAC3 31df1c04-e901-4b2d-ad1e-19f9f7f6589d ae32b9769b0b50daa23eb6e2ff1b3c43 { 'aliquot_tag': 'ALQ_34afd6fd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02784.WGS.N.hg38 C3N-02784 GBM WGS blood_normal CPT0206060002 7c5eb1a4-b218-4654-9c46-76f044f69aee_wgs_gdc_realn.bam 86077990346 BAM harmonized CPTAC3 acc13c17-4844-4ecd-88bd-a087db0726d9 c5e0df33a15c810f5d74aa4f213cef14 { 'aliquot_tag': 'ALQ_34afd6fd', 'gdc_sample_type': 'Blood Derived Normal' } @@ -32958,9 +35181,9 @@ C3N-02785.MethArray.Red.T C3N-02785 GBM Methylation Array tumor CPT0206110009 20 C3N-02785.miRNA-Seq.T C3N-02785 GBM miRNA-Seq tumor CPT0206110006 181219_UNC31-K00269_0173_BHYGJJBBXX_ACTGAT_S24_L004_R1_001.unaln.bam 211228057 BAM unaligned CPTAC3 133d3832-5a37-4e1e-bb3d-936b03082ee8 50cd2eec1302a676d543d6109df5d085 { 'aliquot_tag': 'ALQ_4abe1d51', 'gdc_sample_type': 'Primary Tumor' } C3N-02785.miRNA-Seq.T.hg38 C3N-02785 GBM miRNA-Seq tumor CPT0206110006 36b97cc7-fd05-4d87-bdfd-6fed119dbb38_mirnaseq_gdc_realn.bam 240017664 BAM harmonized CPTAC3 ee3a92ac-afa8-4bf1-91e7-4d0d17840ca8 efc8d52a8e23bd4756f2f5e20fe154db { 'aliquot_tag': 'ALQ_4abe1d51', 'gdc_sample_type': 'Primary Tumor' } C3N-02785.RNA-Seq.chimeric.T.hg38 C3N-02785 GBM RNA-Seq tumor CPT0206110006 b3cde840-6a5d-495e-87b3-bd1ffcedd3a0.rna_seq.chimeric.gdc_realn.bam 139193910 BAM chimeric harmonized CPTAC3 e4bafaec-9cb9-4caa-902a-a2865d407ff6 13ef8fbcafff86bca86da60819f21f72 { 'aliquot_tag': 'ALQ_4abe1d51', 'gdc_sample_type': 'Primary Tumor' } -C3N-02785.RNA-Seq.genomic.T.hg38 C3N-02785 GBM RNA-Seq tumor CPT0206110006 b3cde840-6a5d-495e-87b3-bd1ffcedd3a0.rna_seq.genomic.gdc_realn.bam 8403420224 BAM genomic harmonized CPTAC3 53b6cd8f-1292-432c-86ba-551cde66a806 0ed11252865b8eba14de17bde8351a13 { 'aliquot_tag': 'ALQ_4abe1d51', 'gdc_sample_type': 'Primary Tumor' } -C3N-02785.RNA-Seq.R1_L008.T C3N-02785 GBM RNA-Seq tumor CPT0206110006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L008_R1_001.fastq.gz 4034452742 FASTQ R1_L008 unaligned CPTAC3 705ac8ac-ceeb-4500-a7f5-e5dc71df23ca 6183edc73ca2f9c72d1ff87dfe9e0636 { 'aliquot_tag': 'ALQ_4abe1d51', 'gdc_sample_type': 'Primary Tumor' } -C3N-02785.RNA-Seq.R2_L008.T C3N-02785 GBM RNA-Seq tumor CPT0206110006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L008_R2_001.fastq.gz 3955844270 FASTQ R2_L008 unaligned CPTAC3 eb204a8f-a4ac-41da-87dd-661ac14d13cd 1ba568bb12f3248b2ef00efbb4b1e513 { 'aliquot_tag': 'ALQ_4abe1d51', 'gdc_sample_type': 'Primary Tumor' } +C3N-02785.RNA-Seq.genomic.T.hg38 C3N-02785 GBM RNA-Seq tumor CPT0206110006 b3cde840-6a5d-495e-87b3-bd1ffcedd3a0.rna_seq.genomic.gdc_realn.bam 8403420224 BAM genomic harmonized CPTAC3 c78cc904-2983-46df-9d8b-c247f5460ed5 0ed11252865b8eba14de17bde8351a13 { 'aliquot_tag': 'ALQ_4abe1d51', 'gdc_sample_type': 'Primary Tumor' } +C3N-02785.RNA-Seq.R1_L008.T C3N-02785 GBM RNA-Seq tumor CPT0206110006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L008_R1_001.fastq.gz 4034452742 FASTQ R1_L008 unaligned CPTAC3 705ac8ac-ceeb-4500-a7f5-e5dc71df23ca 6183edc73ca2f9c72d1ff87dfe9e0636 { 'aliquot_tag': 'ALQ_4abe1d51', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02785.RNA-Seq.R2_L008.T C3N-02785 GBM RNA-Seq tumor CPT0206110006 181002_UNC31-K00269_0156_AHWN3HBBXX_ATCACG_S1_L008_R2_001.fastq.gz 3955844270 FASTQ R2_L008 unaligned CPTAC3 eb204a8f-a4ac-41da-87dd-661ac14d13cd 1ba568bb12f3248b2ef00efbb4b1e513 { 'aliquot_tag': 'ALQ_4abe1d51', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02785.RNA-Seq.transcriptome.T.hg38 C3N-02785 GBM RNA-Seq tumor CPT0206110006 b3cde840-6a5d-495e-87b3-bd1ffcedd3a0.rna_seq.transcriptome.gdc_realn.bam 11455255282 BAM transcriptome harmonized CPTAC3 5193d74b-4a6e-4008-bead-c80b866a70a0 145a008c64a135ebe41536de2265698c { 'aliquot_tag': 'ALQ_4abe1d51', 'gdc_sample_type': 'Primary Tumor' } C3N-02785.WGS.N C3N-02785 GBM WGS blood_normal CPT0206170002 CPT0206170002.WholeGenome.RP-1303.bam 57158824290 BAM aligned CPTAC3 e96a4030-bab1-4bde-80d5-ec9e5fcd4fcb 0f482af27a118da3d62b70f614119b80 { 'aliquot_tag': 'ALQ_c2932ce8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02785.WGS.N.hg38 C3N-02785 GBM WGS blood_normal CPT0206170002 f5c9474a-3ec0-4252-bcc4-9d4c12ccb733_wgs_gdc_realn.bam 83206373736 BAM harmonized CPTAC3 ac65cceb-d9c0-4837-a9bc-b7bf0540abac edd49d9effd1794dd81ef026bcfafc76 { 'aliquot_tag': 'ALQ_c2932ce8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -32975,9 +35198,9 @@ C3N-02786.MethArray.Red.T C3N-02786 GBM Methylation Array tumor CPT0206230006 20 C3N-02786.miRNA-Seq.T C3N-02786 GBM miRNA-Seq tumor CPT0206230009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAGGCG_S33_L008_R1_001.unaln.bam 123467151 BAM unaligned CPTAC3 fc3d517e-2d36-4d44-a368-3aa8fa15bdda 05608983ef40f579939521dca4d6c140 { 'aliquot_tag': 'ALQ_2655210e', 'gdc_sample_type': 'Primary Tumor' } C3N-02786.miRNA-Seq.T.hg38 C3N-02786 GBM miRNA-Seq tumor CPT0206230009 c5bc20f2-9463-42ae-9764-29da636702b5_mirnaseq_gdc_realn.bam 143375204 BAM harmonized CPTAC3 1ea5c6ed-9348-4172-b93a-415cc10ef27b 4fcc7525d77cac45ec1e28a3e28a3044 { 'aliquot_tag': 'ALQ_2655210e', 'gdc_sample_type': 'Primary Tumor' } C3N-02786.RNA-Seq.chimeric.T.hg38 C3N-02786 GBM RNA-Seq tumor CPT0206230009 599c37da-7569-4f52-9818-5e6ec3757589.rna_seq.chimeric.gdc_realn.bam 44649931 BAM chimeric harmonized CPTAC3 fddb2d18-62cf-4040-80a7-5010c7021fac 3f959030450e22526074ae4eb3c2eb34 { 'aliquot_tag': 'ALQ_2655210e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02786.RNA-Seq.genomic.T.hg38 C3N-02786 GBM RNA-Seq tumor CPT0206230009 599c37da-7569-4f52-9818-5e6ec3757589.rna_seq.genomic.gdc_realn.bam 8848301429 BAM genomic harmonized CPTAC3 a3aa3d2e-dba9-422a-a298-037be421392b 7e236e6bb6b84603e292ca121a0fad71 { 'aliquot_tag': 'ALQ_2655210e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02786.RNA-Seq.R1_L008.T C3N-02786 GBM RNA-Seq tumor CPT0206230009 180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R1_001.fastq.gz 4067842049 FASTQ R1_L008 unaligned CPTAC3 66a24337-0fb5-41bb-bf11-2fcb9a06f88e 82a334f5a30e2a5dc1d354e295627e85 { 'aliquot_tag': 'ALQ_2655210e', 'gdc_sample_type': 'Primary Tumor' } -C3N-02786.RNA-Seq.R2_L008.T C3N-02786 GBM RNA-Seq tumor CPT0206230009 180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R2_001.fastq.gz 4274543264 FASTQ R2_L008 unaligned CPTAC3 6fd2a712-9c61-4898-8ead-f530d7757699 e79a33aba5fc9e82eefb1634529bfb25 { 'aliquot_tag': 'ALQ_2655210e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02786.RNA-Seq.genomic.T.hg38 C3N-02786 GBM RNA-Seq tumor CPT0206230009 599c37da-7569-4f52-9818-5e6ec3757589.rna_seq.genomic.gdc_realn.bam 8848301429 BAM genomic harmonized CPTAC3 51ec9900-90a3-47c2-aa23-25c493fa373c 7e236e6bb6b84603e292ca121a0fad71 { 'aliquot_tag': 'ALQ_2655210e', 'gdc_sample_type': 'Primary Tumor' } +C3N-02786.RNA-Seq.R1_L008.T C3N-02786 GBM RNA-Seq tumor CPT0206230009 180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R1_001.fastq.gz 4067842049 FASTQ R1_L008 unaligned CPTAC3 66a24337-0fb5-41bb-bf11-2fcb9a06f88e 82a334f5a30e2a5dc1d354e295627e85 { 'aliquot_tag': 'ALQ_2655210e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02786.RNA-Seq.R2_L008.T C3N-02786 GBM RNA-Seq tumor CPT0206230009 180918_UNC31-K00269_0153_BHWNFCBBXX_ATTCCT_S32_L008_R2_001.fastq.gz 4274543264 FASTQ R2_L008 unaligned CPTAC3 6fd2a712-9c61-4898-8ead-f530d7757699 e79a33aba5fc9e82eefb1634529bfb25 { 'aliquot_tag': 'ALQ_2655210e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02786.RNA-Seq.transcriptome.T.hg38 C3N-02786 GBM RNA-Seq tumor CPT0206230009 599c37da-7569-4f52-9818-5e6ec3757589.rna_seq.transcriptome.gdc_realn.bam 10253695683 BAM transcriptome harmonized CPTAC3 1abf2e63-a23c-41f9-802e-2d594ef0afae 300238bf4d05de51bd97f5307c9bff1a { 'aliquot_tag': 'ALQ_2655210e', 'gdc_sample_type': 'Primary Tumor' } C3N-02786.WGS.N C3N-02786 GBM WGS blood_normal CPT0206280002 CPT0206280002.WholeGenome.RP-1303.bam 61607903575 BAM aligned CPTAC3 9463ccfb-46b1-4a4a-b78f-ecafd6281e95 a16a0a3241c16594a8cd20f1f47deefe { 'aliquot_tag': 'ALQ_c657c997', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02786.WGS.N.hg38 C3N-02786 GBM WGS blood_normal CPT0206280002 66d7fa25-dd36-444f-be45-50698701694a_wgs_gdc_realn.bam 89406270565 BAM harmonized CPTAC3 8311c988-d841-4323-a7d2-dae23167d9dd ab046d58389160cbbb0b66c62ce3779f { 'aliquot_tag': 'ALQ_c657c997', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33000,14 +35223,14 @@ C3N-02788.REP_7db6ef3a.WXS.T.hg38 C3N-02788 GBM WXS tumor CPT0206330006 7abd92d0 C3N-02788.REP_ed09f2ab.miRNA-Seq.T C3N-02788 GBM miRNA-Seq tumor CPT0206330009 190712_UNC32-K00270_0192_BH7HL3BBXY_TATAAT_S20_L006_R1_001.unaln.bam 249498216 BAM unaligned CPTAC3 25a3e5fd-e370-47a6-966d-0c0383465e5e 57e30b4c2d050098ccc339253078f18b { 'aliquot_tag': 'REP_ed09f2ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-02788.REP_ed09f2ab.miRNA-Seq.T.hg38 C3N-02788 GBM miRNA-Seq tumor CPT0206330009 e9a7f315-2214-4b4e-a9bd-19be335a1d95_mirnaseq_gdc_realn.bam 277630523 BAM harmonized CPTAC3 d861cbe4-15f7-4707-82a0-64f2dc16e953 3b4fe7d1145f776d61de645e627e8db5 { 'aliquot_tag': 'REP_ed09f2ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-02788.REP_ed09f2ab.RNA-Seq.chimeric.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206330009 83c9a6d9-eb15-4393-98a2-9998992f7ed0.rna_seq.chimeric.gdc_realn.bam 59797032 BAM chimeric harmonized CPTAC3 ffbeaa5d-55c2-4337-8cf9-2f6a32503cf4 0ded8ff55853dda49215a5b6ee50a397 { 'aliquot_tag': 'REP_ed09f2ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-02788.REP_ed09f2ab.RNA-Seq.genomic.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206330009 83c9a6d9-eb15-4393-98a2-9998992f7ed0.rna_seq.genomic.gdc_realn.bam 11269058877 BAM genomic harmonized CPTAC3 ac6b0081-766a-4ae5-8cdc-4d8daf839631 db2977eb6e13939b9ad20c585e7ecdbc { 'aliquot_tag': 'REP_ed09f2ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-02788.REP_ed09f2ab.RNA-Seq.R1_L002.T C3N-02788 GBM RNA-Seq tumor CPT0206330009 190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R1_001.fastq.gz 4684053431 FASTQ R1_L002 unaligned CPTAC3 7bf21101-629d-4259-9f38-bfe43c0d53fc c49453e0b5b74b6319d52cc63db777fb { 'aliquot_tag': 'REP_ed09f2ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } -C3N-02788.REP_ed09f2ab.RNA-Seq.R2_L002.T C3N-02788 GBM RNA-Seq tumor CPT0206330009 190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R2_001.fastq.gz 5280082406 FASTQ R2_L002 unaligned CPTAC3 a9dca933-ce7f-4c10-baf2-71e0ac9d55b4 aebec0339799c517d34032a504b8a6d1 { 'aliquot_tag': 'REP_ed09f2ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3N-02788.REP_ed09f2ab.RNA-Seq.genomic.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206330009 83c9a6d9-eb15-4393-98a2-9998992f7ed0.rna_seq.genomic.gdc_realn.bam 11269058877 BAM genomic harmonized CPTAC3 a42a15eb-ecfc-4cb4-8548-5fe25f3e7934 db2977eb6e13939b9ad20c585e7ecdbc { 'aliquot_tag': 'REP_ed09f2ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } +C3N-02788.REP_ed09f2ab.RNA-Seq.R1_L002.T C3N-02788 GBM RNA-Seq tumor CPT0206330009 190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R1_001.fastq.gz 4684053431 FASTQ R1_L002 unaligned CPTAC3 7bf21101-629d-4259-9f38-bfe43c0d53fc c49453e0b5b74b6319d52cc63db777fb { 'aliquot_tag': 'REP_ed09f2ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R1', 'lane': 'L002' } +C3N-02788.REP_ed09f2ab.RNA-Seq.R2_L002.T C3N-02788 GBM RNA-Seq tumor CPT0206330009 190614_UNC32-K00270_0182_BH7777BBXY_GGAGCGTC-GTCCGTGC_S5_L002_R2_001.fastq.gz 5280082406 FASTQ R2_L002 unaligned CPTAC3 a9dca933-ce7f-4c10-baf2-71e0ac9d55b4 aebec0339799c517d34032a504b8a6d1 { 'aliquot_tag': 'REP_ed09f2ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed', 'read': 'R2', 'lane': 'L002' } C3N-02788.REP_ed09f2ab.RNA-Seq.transcriptome.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206330009 83c9a6d9-eb15-4393-98a2-9998992f7ed0.rna_seq.transcriptome.gdc_realn.bam 10855362272 BAM transcriptome harmonized CPTAC3 f75cf70b-6d6e-425a-a5df-8632df0e14c9 76c29e2cb0030eccec04c4c26bde2e97 { 'aliquot_tag': 'REP_ed09f2ab', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Distribution - original aliquot failed' } C3N-02788.RNA-Seq.chimeric.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206350006 5ee2f0ff-a4ef-473e-b4f1-363f157d5def.rna_seq.chimeric.gdc_realn.bam 198910017 BAM chimeric harmonized CPTAC3 ab06f778-5a29-4f14-b75b-298e36d4ebe8 d82bcf72556377cb09553a3fedcb45ff { 'aliquot_tag': 'ALQ_f2f61a9a', 'gdc_sample_type': 'Primary Tumor' } C3N-02788.RNA-Seq.genomic.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206350006 5ee2f0ff-a4ef-473e-b4f1-363f157d5def.rna_seq.genomic.gdc_realn.bam 9975497060 BAM genomic harmonized CPTAC3 62179a40-8513-44ab-82bd-574fe33f0471 d41f1ba9aa358ddcf5f3376b6d2a472f { 'aliquot_tag': 'ALQ_f2f61a9a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02788.RNA-Seq.R1_L008.T C3N-02788 GBM RNA-Seq tumor CPT0206350006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L008_R1_001.fastq.gz 4658025764 FASTQ R1_L008 unaligned CPTAC3 62b1b0ce-4eb2-46d2-94d8-aee595b6d77b 53957fcb41603b6eeaa1b0ed02eff4e6 { 'aliquot_tag': 'ALQ_f2f61a9a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02788.RNA-Seq.R2_L008.T C3N-02788 GBM RNA-Seq tumor CPT0206350006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L008_R2_001.fastq.gz 4762905703 FASTQ R2_L008 unaligned CPTAC3 146465b8-09cb-4b1c-966b-cb5ac56598eb e813c1293b66bca19b82431de76bc308 { 'aliquot_tag': 'ALQ_f2f61a9a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02788.RNA-Seq.R1_L008.T C3N-02788 GBM RNA-Seq tumor CPT0206350006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L008_R1_001.fastq.gz 4658025764 FASTQ R1_L008 unaligned CPTAC3 62b1b0ce-4eb2-46d2-94d8-aee595b6d77b 53957fcb41603b6eeaa1b0ed02eff4e6 { 'aliquot_tag': 'ALQ_f2f61a9a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02788.RNA-Seq.R2_L008.T C3N-02788 GBM RNA-Seq tumor CPT0206350006 181002_UNC31-K00269_0156_AHWN3HBBXX_CGATGT_S2_L008_R2_001.fastq.gz 4762905703 FASTQ R2_L008 unaligned CPTAC3 146465b8-09cb-4b1c-966b-cb5ac56598eb e813c1293b66bca19b82431de76bc308 { 'aliquot_tag': 'ALQ_f2f61a9a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-02788.RNA-Seq.transcriptome.T.hg38 C3N-02788 GBM RNA-Seq tumor CPT0206350006 5ee2f0ff-a4ef-473e-b4f1-363f157d5def.rna_seq.transcriptome.gdc_realn.bam 11075739003 BAM transcriptome harmonized CPTAC3 cada5703-567e-4834-bb3e-8a818122614e b121ffc8ba2e7f0e91d5deeac2246549 { 'aliquot_tag': 'ALQ_f2f61a9a', 'gdc_sample_type': 'Primary Tumor' } C3N-02788.WGS.N C3N-02788 GBM WGS blood_normal CPT0206390002 CPT0206390002.WholeGenome.RP-1303.bam 60760463962 BAM aligned CPTAC3 ade8f2ff-6eb1-4b41-aba0-911969d177c6 cb7beb43aac83f4a7acdba0150a96f78 { 'aliquot_tag': 'ALQ_306b3382', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02788.WGS.N.hg38 C3N-02788 GBM WGS blood_normal CPT0206390002 784b8eee-0d64-4a0c-bb26-694e63127598_wgs_gdc_realn.bam 88933770661 BAM harmonized CPTAC3 9cee893d-bbe8-4f6b-a08f-e20512c97679 169cee23bf7ccae1077aa4a468bef708 { 'aliquot_tag': 'ALQ_306b3382', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33018,17 +35241,21 @@ C3N-02788.WXS.N.hg38 C3N-02788 GBM WXS blood_normal CPT0206390002 784b8eee-0d64- C3N-02788.WXS.T C3N-02788 GBM WXS tumor CPT0206350009 CPT0206350009.WholeExome.RP-1303.bam 23580643355 BAM aligned CPTAC3 00de89fa-7389-4ba6-844d-98f63189499a 42a2d5e7ae3764e6edc20f405213b9ac { 'aliquot_tag': 'ALQ_6249070b', 'gdc_sample_type': 'Primary Tumor' } C3N-02788.WXS.T.hg38 C3N-02788 GBM WXS tumor CPT0206350009 aa167109-bd98-4b3b-99d8-019e11e988f5_wxs_gdc_realn.bam 32212172650 BAM harmonized CPTAC3 34dc6412-ae30-444d-8683-2be9eb0f0924 8695d825ebfba5ea1c91facd86be22b2 { 'aliquot_tag': 'ALQ_6249070b', 'gdc_sample_type': 'Primary Tumor' } C3N-02789.DUP_aadf5570.WGS.T C3N-02789 UCEC WGS tumor CPT0186010007_1 CPT0186010007_1.WholeGenome.RP-1303.bam 64519562640 BAM aligned CPTAC3 803773e3-b365-46f1-89b9-126be88a2364 752af37204382c3cb9b1b3c4fb084d74 { 'aliquot_tag': 'DUP_aadf5570', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } +C3N-02789.DUP_aadf5570.WGS.T.hg38 C3N-02789 UCEC WGS tumor CPT0186010007_1 e9de4564-6c8b-43c7-9f3a-119a8cdc4596_wgs_gdc_realn.bam 96197335427 BAM harmonized CPTAC3 d73392c9-6706-4d86-8623-33af6e9e8311 5dc1ca21d48116b85876da7b009d908a { 'aliquot_tag': 'DUP_aadf5570', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: No new shipment/material. DNA aliquot resubmission for Broad post-harmonization sequencing and sample type mismatch correction.' } C3N-02789.MethArray.Green.T C3N-02789 UCEC Methylation Array tumor CPT0186010007 203561620153_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 194d7685-bab1-430f-b1ad-563694a8225e 89bc9adf7abb44225b56f041eb66ce7b { 'aliquot_tag': 'ALQ_1c8dd912', 'gdc_sample_type': 'Primary Tumor' } C3N-02789.MethArray.Red.T C3N-02789 UCEC Methylation Array tumor CPT0186010007 203561620153_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 bb9d450f-8c89-4f3a-bad8-b9873f5afc07 ba8046f4d434b50dcd2fad83a7f2112e { 'aliquot_tag': 'ALQ_1c8dd912', 'gdc_sample_type': 'Primary Tumor' } C3N-02789.miRNA-Seq.T C3N-02789 UCEC miRNA-Seq tumor CPT0186010010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTGAAA_S19_L003_R1_001.unaln.bam 204083880 BAM unaligned CPTAC3 a6085fa8-9081-4796-9d0a-5252cbf3c3de 37ae8054e5775e6ca66ef4be32934149 { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor' } C3N-02789.miRNA-Seq.T.hg38 C3N-02789 UCEC miRNA-Seq tumor CPT0186010010 01a62d3e-e905-4099-a6e1-247f37119995_mirnaseq_gdc_realn.bam 225741221 BAM harmonized CPTAC3 72ed1975-1adb-4e9b-a6ba-4efa06042e46 fd5a7a61c6d7139aacbbbed2e1351414 { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02789.RNA-Seq.chimeric.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 a34bb464-6efe-4e4d-ab44-c2da0b4dc305.rna_seq.chimeric.gdc_realn.bam 33794572 BAM chimeric harmonized CPTAC3 6973ddda-d636-48b7-8192-d5c0df161767 e72e0a31a4b30a530091324613bb8ba8 { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02789.RNA-Seq.genomic.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 a34bb464-6efe-4e4d-ab44-c2da0b4dc305.rna_seq.genomic.gdc_realn.bam 7961120036 BAM genomic harmonized CPTAC3 94089e72-1c52-4da7-80a1-ad1f2c583c31 4f79fec85cd01aef377452fee14c67aa { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02789.RNA-Seq.R1_L006.T C3N-02789 UCEC RNA-Seq tumor CPT0186010010 190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R1_001.fastq.gz 3840472252 FASTQ R1_L006 unaligned CPTAC3 4353b2fe-1b21-4707-b307-e3d8cadc9c4e f0094d315338c4b3b5d65be9ac6173b2 { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02789.RNA-Seq.R1_.T C3N-02789 UCEC RNA-Seq tumor CPT0186020001 20210729_P3_D7_WB7988-Plate3_S43_R1_001.fastq.gz 4681302026 FASTQ R1_ unaligned CPTAC3 59cad0cc-d9ea-42f5-b61a-2f69b4d8593d e4195f6a44cf447d86914539e4375668 { 'aliquot_tag': 'ALQ_b24e06f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02789.RNA-Seq.R2_L006.T C3N-02789 UCEC RNA-Seq tumor CPT0186010010 190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R2_001.fastq.gz 4376535516 FASTQ R2_L006 unaligned CPTAC3 918aaf2f-e742-4f07-ae31-805fa1810d60 a3fb0f7bbcc71db617ed4fbe88e7ca03 { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02789.RNA-Seq.R2_.T C3N-02789 UCEC RNA-Seq tumor CPT0186020001 20210729_P3_D7_WB7988-Plate3_S43_R2_001.fastq.gz 4906743791 FASTQ R2_ unaligned CPTAC3 def093bb-aae7-4785-87a7-b6379d1a72d2 2f165981905e7b0d450f9c1ceac5da87 { 'aliquot_tag': 'ALQ_b24e06f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-02789.RNA-Seq.transcriptome.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 a34bb464-6efe-4e4d-ab44-c2da0b4dc305.rna_seq.transcriptome.gdc_realn.bam 7810393985 BAM transcriptome harmonized CPTAC3 f15063a8-999e-41e3-94e2-e6e8bf6ffc5b 2197fa4123855aa45a1c598ee7bcfb0d { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02789.RNA-Seq.chimeric.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 5de67b45-6c35-4984-b1ca-386dcbf22cce.rna_seq.chimeric.gdc_realn.bam 33768476 BAM chimeric harmonized CPTAC3 7df404c6-0f75-4b20-97bb-3384d3dbf648 16181001315d9990d438930c2bc0f6f1 { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02789.RNA-Seq.chimeric.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186020001 59a7a5c9-7647-46be-b33a-24073413958e.rna_seq.chimeric.gdc_realn.bam 167624464 BAM chimeric harmonized CPTAC3 0c481972-56d6-405d-9b39-53bc9831f492 39105220c6cad24238dea17864640618 { 'aliquot_tag': 'ALQ_b24e06f7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02789.RNA-Seq.genomic.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 5de67b45-6c35-4984-b1ca-386dcbf22cce.rna_seq.genomic.gdc_realn.bam 7962165720 BAM genomic harmonized CPTAC3 3b96c9f9-0574-4945-b109-00dae4c3ad89 7e6cc52b8ad5954028c459367ebcb81b { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02789.RNA-Seq.genomic.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186020001 59a7a5c9-7647-46be-b33a-24073413958e.rna_seq.genomic.gdc_realn.bam 9689522511 BAM genomic harmonized CPTAC3 5f175c78-95d3-4612-9415-6226141e4c95 7c9bf8e6aeb2df8f12ded89f659f5523 { 'aliquot_tag': 'ALQ_b24e06f7', 'gdc_sample_type': 'Primary Tumor' } +C3N-02789.RNA-Seq.R1_L006.T C3N-02789 UCEC RNA-Seq tumor CPT0186010010 190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R1_001.fastq.gz 3840472252 FASTQ R1_L006 unaligned CPTAC3 4353b2fe-1b21-4707-b307-e3d8cadc9c4e f0094d315338c4b3b5d65be9ac6173b2 { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02789.RNA-Seq.R2_L006.T C3N-02789 UCEC RNA-Seq tumor CPT0186010010 190523_UNC32-K00270_0176_BH7CW7BBXY_TTCCTGTT-AGTATCTT_S21_L006_R2_001.fastq.gz 4376535516 FASTQ R2_L006 unaligned CPTAC3 918aaf2f-e742-4f07-ae31-805fa1810d60 a3fb0f7bbcc71db617ed4fbe88e7ca03 { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02789.RNA-Seq.T C3N-02789 UCEC RNA-Seq tumor CPT0186020001 20210729_P3_D7_WB7988-Plate3_S43_R1_001.fastq.gz 4681302026 FASTQ unaligned CPTAC3 59cad0cc-d9ea-42f5-b61a-2f69b4d8593d e4195f6a44cf447d86914539e4375668 +C3N-02789.RNA-Seq.T C3N-02789 UCEC RNA-Seq tumor CPT0186020001 20210729_P3_D7_WB7988-Plate3_S43_R2_001.fastq.gz 4906743791 FASTQ unaligned CPTAC3 def093bb-aae7-4785-87a7-b6379d1a72d2 2f165981905e7b0d450f9c1ceac5da87 +C3N-02789.RNA-Seq.transcriptome.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186010010 5de67b45-6c35-4984-b1ca-386dcbf22cce.rna_seq.transcriptome.gdc_realn.bam 8986346622 BAM transcriptome harmonized CPTAC3 02964aac-5615-47db-8984-de0c7be713d0 45efba9b76b6c5e70dac328ae73e3083 { 'aliquot_tag': 'ALQ_9bf27df0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02789.RNA-Seq.transcriptome.T.hg38 C3N-02789 UCEC RNA-Seq tumor CPT0186020001 59a7a5c9-7647-46be-b33a-24073413958e.rna_seq.transcriptome.gdc_realn.bam 4315782139 BAM transcriptome harmonized CPTAC3 8b8202c4-26d2-49dc-8972-b025374cfff9 1acbd56025eb82d260cc1e29dfb2e671 { 'aliquot_tag': 'ALQ_b24e06f7', 'gdc_sample_type': 'Primary Tumor' } C3N-02789.WGS.N C3N-02789 UCEC WGS blood_normal CPT0187210002 CPT0187210002.WholeGenome.RP-1303.bam 79142145455 BAM aligned CPTAC3 6d3b1cec-18c2-4257-8d2b-fe521f141e8c 2129a0dc07788c613c10c95deb32b3e0 { 'aliquot_tag': 'ALQ_87588722', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02789.WGS.N.hg38 C3N-02789 UCEC WGS blood_normal CPT0187210002 41120db2-190d-4f48-8307-5840b7e0610d_wgs_gdc_realn.bam 116123753565 BAM harmonized CPTAC3 264e1112-48d6-4989-85da-c03dddc49fa0 2699e880cbd5db607d960e7834130dad { 'aliquot_tag': 'ALQ_87588722', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02789.WGS.T C3N-02789 UCEC WGS tumor CPT0186010007 CPT0186010007.WholeGenome.RP-1303.bam 28213945581 BAM aligned CPTAC3 a0ba6e02-f0fb-49b2-ac43-1bf1c9bc0cb9 3841e3e61ac59c2dd9d549275f92f57a { 'aliquot_tag': 'ALQ_1c8dd912', 'gdc_sample_type': 'Primary Tumor' } @@ -33045,16 +35272,16 @@ C3N-02811.miRNA-Seq.A C3N-02811 CCRCC miRNA-Seq tissue_normal CPT0158410009 1901 C3N-02811.miRNA-Seq.A.hg38 C3N-02811 CCRCC miRNA-Seq tissue_normal CPT0158410009 0f50c5c9-4613-4958-a40b-370bdb019d29_mirnaseq_gdc_realn.bam 300589381 BAM harmonized CPTAC3 daaeb615-efaa-409d-8cc3-0f72a154cd9f 3f4e424ac7c7926a4f4b85feda969cbc { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02811.miRNA-Seq.T C3N-02811 CCRCC miRNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0176_AHYGLVBBXX_CTCAGA_S40_L005_R1_001.unaln.bam 187805973 BAM unaligned CPTAC3 345eba3e-b484-4a34-80b7-7402c65e3768 d102a6705ded0a1b7867c6d522cf3249 { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor' } C3N-02811.miRNA-Seq.T.hg38 C3N-02811 CCRCC miRNA-Seq tumor CPT0158390006 28df4fa1-5aa3-4b2d-96b1-423be0fa872b_mirnaseq_gdc_realn.bam 201259133 BAM harmonized CPTAC3 4af03392-11e9-4708-95f7-7bb87b36c285 48e7586ece76b58d8c160ef83096fb9e { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor' } -C3N-02811.RNA-Seq.chimeric.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 543a7e9e-2a77-47c7-b1fc-ba31fe07f106.rna_seq.chimeric.gdc_realn.bam 31741539 BAM chimeric harmonized CPTAC3 b7b275c2-d332-4a10-a931-7668afc179cb 7e38c592ff8b865b8d6a596c6ab3f089 { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02811.RNA-Seq.chimeric.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 d8e337a9-bad3-42ff-bd6b-c64ac0c54123.rna_seq.chimeric.gdc_realn.bam 44273405 BAM chimeric harmonized CPTAC3 441bacef-374e-40ec-991b-fde0abeb6252 30b1c00efa2d398118eaf111d0e59d25 { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor' } -C3N-02811.RNA-Seq.genomic.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 543a7e9e-2a77-47c7-b1fc-ba31fe07f106.rna_seq.genomic.gdc_realn.bam 7983101942 BAM genomic harmonized CPTAC3 a9ba5d73-5567-4975-99ef-4e41116adbbf 094e13d49a0a71ae12d68dee5d0d3644 { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02811.RNA-Seq.genomic.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 d8e337a9-bad3-42ff-bd6b-c64ac0c54123.rna_seq.genomic.gdc_realn.bam 9499815150 BAM genomic harmonized CPTAC3 32677f77-8a8c-4e2a-b600-4a7c97a1ab9d 13c2b27ec8ca194b7bf38d0720c2ca09 { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor' } -C3N-02811.RNA-Seq.R1_L005.T C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0177_BH32KTBBXY_CCGTCC_S20_L005_R1_001.fastq.gz 4557259586 FASTQ R1_L005 unaligned CPTAC3 a04b4675-67f5-4a91-a37c-169b2428ac2f 2824db59eced80eb7e5055916718fd75 { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor' } -C3N-02811.RNA-Seq.R1_L006.A C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 190123_UNC31-K00269_0183_BH3L7LBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 3677409445 FASTQ R1_L006 unaligned CPTAC3 927aa7e2-0377-4b1c-8415-aacc3446a97a 544826926ca09db9dd98661c58876357 { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02811.RNA-Seq.R2_L005.T C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0177_BH32KTBBXY_CCGTCC_S20_L005_R2_001.fastq.gz 4584500003 FASTQ R2_L005 unaligned CPTAC3 b719c08a-a980-48c4-ad4a-07b6977628a4 801e02259076fdb71c8c22768dd1db22 { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor' } -C3N-02811.RNA-Seq.R2_L006.A C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 190123_UNC31-K00269_0183_BH3L7LBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 3912059478 FASTQ R2_L006 unaligned CPTAC3 c225e3db-6ce8-43d0-a1fe-11fd3669cfa2 652b6627df8413c397d314773b2e0d2e { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02811.RNA-Seq.transcriptome.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 543a7e9e-2a77-47c7-b1fc-ba31fe07f106.rna_seq.transcriptome.gdc_realn.bam 8756343031 BAM transcriptome harmonized CPTAC3 173e059d-e5eb-4384-a674-798a19ab3fa7 6eb595fa2a9a07841858611fc4b87725 { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02811.RNA-Seq.transcriptome.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 d8e337a9-bad3-42ff-bd6b-c64ac0c54123.rna_seq.transcriptome.gdc_realn.bam 11487456853 BAM transcriptome harmonized CPTAC3 3f5b96e5-0c60-4dbc-96d3-8b001a6cfc7e d2ee9d37c3c224fa1a769221dce46ddc { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor' } +C3N-02811.RNA-Seq.chimeric.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 b56eccdf-5602-4f04-8598-5e00e589816b.rna_seq.chimeric.gdc_realn.bam 31730782 BAM chimeric harmonized CPTAC3 e6e9d6f8-c26c-4900-bfe3-12afeed2e7c1 11542fb2a462a5c319cc8939ac32fc1c { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02811.RNA-Seq.chimeric.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 c85e370b-5787-4832-8dff-5138a2052300.rna_seq.chimeric.gdc_realn.bam 44252927 BAM chimeric harmonized CPTAC3 b873906c-b351-4fef-89d9-164a3e100405 571f337b4e698d4e95507ed717ce6d2e { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor' } +C3N-02811.RNA-Seq.genomic.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 b56eccdf-5602-4f04-8598-5e00e589816b.rna_seq.genomic.gdc_realn.bam 7984114021 BAM genomic harmonized CPTAC3 cea9d722-25d6-449f-bed4-14d0dc8b0a9c 449c30c44ce2252f0075cd6b6065859e { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02811.RNA-Seq.genomic.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 c85e370b-5787-4832-8dff-5138a2052300.rna_seq.genomic.gdc_realn.bam 9500027894 BAM genomic harmonized CPTAC3 16e8bee5-4b06-4fdb-91a5-873daae33c91 05ccd03a9e12ee2a80ec74c331b5f83f { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor' } +C3N-02811.RNA-Seq.R1_L005.T C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0177_BH32KTBBXY_CCGTCC_S20_L005_R1_001.fastq.gz 4557259586 FASTQ R1_L005 unaligned CPTAC3 a04b4675-67f5-4a91-a37c-169b2428ac2f 2824db59eced80eb7e5055916718fd75 { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02811.RNA-Seq.R1_L006.A C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 190123_UNC31-K00269_0183_BH3L7LBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 3677409445 FASTQ R1_L006 unaligned CPTAC3 927aa7e2-0377-4b1c-8415-aacc3446a97a 544826926ca09db9dd98661c58876357 { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02811.RNA-Seq.R2_L005.T C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 190108_UNC31-K00269_0177_BH32KTBBXY_CCGTCC_S20_L005_R2_001.fastq.gz 4584500003 FASTQ R2_L005 unaligned CPTAC3 b719c08a-a980-48c4-ad4a-07b6977628a4 801e02259076fdb71c8c22768dd1db22 { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02811.RNA-Seq.R2_L006.A C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 190123_UNC31-K00269_0183_BH3L7LBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 3912059478 FASTQ R2_L006 unaligned CPTAC3 c225e3db-6ce8-43d0-a1fe-11fd3669cfa2 652b6627df8413c397d314773b2e0d2e { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02811.RNA-Seq.transcriptome.A.hg38 C3N-02811 CCRCC RNA-Seq tissue_normal CPT0158410009 b56eccdf-5602-4f04-8598-5e00e589816b.rna_seq.transcriptome.gdc_realn.bam 10007143618 BAM transcriptome harmonized CPTAC3 6e22bb58-31bf-4eb8-968e-1f88d75595a9 b1675a01dfb3d63e0cf3e6b7972de778 { 'aliquot_tag': 'ALQ_ab9ed88f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02811.RNA-Seq.transcriptome.T.hg38 C3N-02811 CCRCC RNA-Seq tumor CPT0158390006 c85e370b-5787-4832-8dff-5138a2052300.rna_seq.transcriptome.gdc_realn.bam 13014056943 BAM transcriptome harmonized CPTAC3 69d1cc66-75aa-4889-9c35-96479bd2c673 9ad3ee0082bca4055f4ed11728869908 { 'aliquot_tag': 'ALQ_1654be67', 'gdc_sample_type': 'Primary Tumor' } C3N-02811.WGS.N C3N-02811 CCRCC WGS blood_normal CPT0159420002 CPT0159420002.WholeGenome.RP-1303.bam 119602612980 BAM aligned CPTAC3 7474c1b1-bfca-4ede-9a45-3e1ec326da5f a787d097be4e1d9b9b8997e19bb79c3c { 'aliquot_tag': 'ALQ_dd9b7063', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02811.WGS.N.hg38 C3N-02811 CCRCC WGS blood_normal CPT0159420002 ad7c9f0f-faad-492c-b2d3-9d5c3d08b19d_wgs_gdc_realn.bam 176045800696 BAM harmonized CPTAC3 c8479063-f347-401d-b0a7-c85a5e696724 4a168439eac553b3152a3a9b94d8d4fa { 'aliquot_tag': 'ALQ_dd9b7063', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02811.WGS.T C3N-02811 CCRCC WGS tumor CPT0158390009 CPT0158390009.WholeGenome.RP-1303.bam 102404679838 BAM aligned CPTAC3 e4f7d866-71d3-4bc1-bb15-20d7561ed861 a31de49e0500f55039a8181d92bab901 { 'aliquot_tag': 'ALQ_86eba3f6', 'gdc_sample_type': 'Primary Tumor' } @@ -33071,16 +35298,16 @@ C3N-02818.miRNA-Seq.A C3N-02818 CCRCC miRNA-Seq tissue_normal CPT0384610006 2101 C3N-02818.miRNA-Seq.A.hg38 C3N-02818 CCRCC miRNA-Seq tissue_normal CPT0384610006 e225c426-0fe3-464c-ac98-04d625fcbce1_mirnaseq_gdc_realn.bam 337761733 BAM harmonized CPTAC3 063534ce-d048-4e9d-abb2-3263c03546de 732c88cee855ffcad2ea42c2754a7570 { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02818.miRNA-Seq.T C3N-02818 CCRCC miRNA-Seq tumor CPT0384570006 210111_UNC32-K00270_0270_AHJ5LKBBXY_GTCCGC_S16_L001_R1_001.unaln.bam 215995441 BAM unaligned CPTAC3 7d8c36ce-c32e-4036-a17b-7bf50b3024c3 6ece375108e18f282668be2890be453c { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor' } C3N-02818.miRNA-Seq.T.hg38 C3N-02818 CCRCC miRNA-Seq tumor CPT0384570006 87abcf75-a32b-4d8c-b5a5-a6e6e5c4e281_mirnaseq_gdc_realn.bam 236636652 BAM harmonized CPTAC3 6a9ac40f-b99d-402a-8b85-2da9bcdd72dc 7b950ee42bbbbc76ebfd1b19693f730c { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor' } -C3N-02818.RNA-Seq.chimeric.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 e840210c-d45a-415b-ae02-591b92861dde.rna_seq.chimeric.gdc_realn.bam 224856267 BAM chimeric harmonized CPTAC3 9b210d2a-e333-48ae-a7b6-271aefa60173 d023e8c4b4c4a1c088c6f1f857ddbb10 { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02818.RNA-Seq.chimeric.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 e3cd6688-6fbf-4596-94a0-c3ff3b3ea37a.rna_seq.chimeric.gdc_realn.bam 434012482 BAM chimeric harmonized CPTAC3 2e770b36-2eb0-4fcf-95a0-c4f1a336ce89 37292b137571a736b226628591d86d1e { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor' } -C3N-02818.RNA-Seq.genomic.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 e840210c-d45a-415b-ae02-591b92861dde.rna_seq.genomic.gdc_realn.bam 9850559690 BAM genomic harmonized CPTAC3 ecd0fb64-f1c3-4f97-a9bc-14a88e808eea abcdf53f2a30c56600fb7fe2584780df { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02818.RNA-Seq.genomic.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 e3cd6688-6fbf-4596-94a0-c3ff3b3ea37a.rna_seq.genomic.gdc_realn.bam 8468872265 BAM genomic harmonized CPTAC3 9ff77224-06d9-44d8-bbc7-bd2a23b26783 4584d4530e96183e0341b122822aa91b { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor' } -C3N-02818.RNA-Seq.R1_L005.A C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGTAAGT-ACTCTATG_S17_L005_R1_001.fastq.gz 4652492930 FASTQ R1_L005 unaligned CPTAC3 008a349f-e929-4ac0-a320-561848d92de1 04daf7a06d2e7414d3565a11acd8af60 { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02818.RNA-Seq.R1_L005.T C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 210105_UNC32-K00270_0269_BHKN5MBBXY_CGGCGTGA-GCGCCTGT_S18_L005_R1_001.fastq.gz 3892192304 FASTQ R1_L005 unaligned CPTAC3 32f88dd1-ca34-4867-9152-377b436b327d 533e4bd41144f62e7ee780063b1e1b91 { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor' } -C3N-02818.RNA-Seq.R2_L005.A C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGTAAGT-ACTCTATG_S17_L005_R2_001.fastq.gz 5208089217 FASTQ R2_L005 unaligned CPTAC3 8aeb4e95-6ee9-409a-a0d7-6690046dbcbb 9c7f4af89ca048cf9f7cd3d13257d2e2 { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02818.RNA-Seq.R2_L005.T C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 210105_UNC32-K00270_0269_BHKN5MBBXY_CGGCGTGA-GCGCCTGT_S18_L005_R2_001.fastq.gz 4470571382 FASTQ R2_L005 unaligned CPTAC3 c9319c6c-68b1-4159-af09-cfb368f3d9d9 e9117d080dda5b7ffaf72733d7dbc975 { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor' } -C3N-02818.RNA-Seq.transcriptome.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 e840210c-d45a-415b-ae02-591b92861dde.rna_seq.transcriptome.gdc_realn.bam 9488979944 BAM transcriptome harmonized CPTAC3 14bef01d-eef5-4408-bfd0-002e515a4635 b87f494d26c1d386fbb208ec7385e650 { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02818.RNA-Seq.transcriptome.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 e3cd6688-6fbf-4596-94a0-c3ff3b3ea37a.rna_seq.transcriptome.gdc_realn.bam 8763312080 BAM transcriptome harmonized CPTAC3 3b7bb86b-5ec2-472c-a3a5-9f231fdaa252 61a2e10c66bba67fc8b778366dc7648f { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor' } +C3N-02818.RNA-Seq.chimeric.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 87eca657-e2ec-433a-b233-4966c8e8920a.rna_seq.chimeric.gdc_realn.bam 224862519 BAM chimeric harmonized CPTAC3 35058dd8-4c03-40f8-b804-3768f28db709 b93f2ddca27b2a75f3c39d866cd4e568 { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02818.RNA-Seq.chimeric.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 c4f79007-50a0-49b3-9dc0-e15559ccacee.rna_seq.chimeric.gdc_realn.bam 434102748 BAM chimeric harmonized CPTAC3 b64fceda-d4fd-4a2d-a1d8-14817a4b4285 22ba2996713d80d86b01107977ae351c { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor' } +C3N-02818.RNA-Seq.genomic.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 87eca657-e2ec-433a-b233-4966c8e8920a.rna_seq.genomic.gdc_realn.bam 9857763682 BAM genomic harmonized CPTAC3 92b133d9-63e9-4d96-9306-7476b5830497 a3f4eb65f78c8a375dc167bbe0c7340c { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02818.RNA-Seq.genomic.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 c4f79007-50a0-49b3-9dc0-e15559ccacee.rna_seq.genomic.gdc_realn.bam 8476752132 BAM genomic harmonized CPTAC3 2e604fe5-33db-47e2-8b1f-bfcd38f875c1 b921a7b418d15fc10699e49b3c4e8cf5 { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor' } +C3N-02818.RNA-Seq.R1_L005.A C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGTAAGT-ACTCTATG_S17_L005_R1_001.fastq.gz 4652492930 FASTQ R1_L005 unaligned CPTAC3 008a349f-e929-4ac0-a320-561848d92de1 04daf7a06d2e7414d3565a11acd8af60 { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02818.RNA-Seq.R1_L005.T C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 210105_UNC32-K00270_0269_BHKN5MBBXY_CGGCGTGA-GCGCCTGT_S18_L005_R1_001.fastq.gz 3892192304 FASTQ R1_L005 unaligned CPTAC3 32f88dd1-ca34-4867-9152-377b436b327d 533e4bd41144f62e7ee780063b1e1b91 { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02818.RNA-Seq.R2_L005.A C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 210105_UNC32-K00270_0269_BHKN5MBBXY_ATGTAAGT-ACTCTATG_S17_L005_R2_001.fastq.gz 5208089217 FASTQ R2_L005 unaligned CPTAC3 8aeb4e95-6ee9-409a-a0d7-6690046dbcbb 9c7f4af89ca048cf9f7cd3d13257d2e2 { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02818.RNA-Seq.R2_L005.T C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 210105_UNC32-K00270_0269_BHKN5MBBXY_CGGCGTGA-GCGCCTGT_S18_L005_R2_001.fastq.gz 4470571382 FASTQ R2_L005 unaligned CPTAC3 c9319c6c-68b1-4159-af09-cfb368f3d9d9 e9117d080dda5b7ffaf72733d7dbc975 { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02818.RNA-Seq.transcriptome.A.hg38 C3N-02818 CCRCC RNA-Seq tissue_normal CPT0384610006 87eca657-e2ec-433a-b233-4966c8e8920a.rna_seq.transcriptome.gdc_realn.bam 10859331897 BAM transcriptome harmonized CPTAC3 c4f67472-83bd-414d-86ab-51b08e99326d dd1e451040d5589658980a9770df4f70 { 'aliquot_tag': 'ALQ_4ba3336', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02818.RNA-Seq.transcriptome.T.hg38 C3N-02818 CCRCC RNA-Seq tumor CPT0384570006 c4f79007-50a0-49b3-9dc0-e15559ccacee.rna_seq.transcriptome.gdc_realn.bam 10018906579 BAM transcriptome harmonized CPTAC3 c717ed2d-6ac2-4a29-baa8-96e5fa81dcc0 575fe1ddce2183579d8d35a3aca27dfe { 'aliquot_tag': 'ALQ_d6eb438', 'gdc_sample_type': 'Primary Tumor' } C3N-02818.WGS.N C3N-02818 CCRCC WGS blood_normal CPT0385440002 CPT0385440002.WholeGenome.RP-2158.bam 23576810784 BAM aligned CPTAC3 a6ca1392-73b2-4e33-880a-73456b8d06cd b64925593b677ec6d84fc58f58d3620e { 'aliquot_tag': 'ALQ_2088d2e0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02818.WGS.N.hg38 C3N-02818 CCRCC WGS blood_normal CPT0385440002 92998ab3-9aab-4c07-9d25-c4208aae1d07_wgs_gdc_realn.bam 72526670197 BAM harmonized CPTAC3 84ffccb6-332d-4cae-98ef-9b28c63857b3 44a0783bd90724f728a43c7d80f8b5ec { 'aliquot_tag': 'ALQ_2088d2e0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02818.WGS.T C3N-02818 CCRCC WGS tumor CPT0384570009 CPT0384570009.WholeGenome.RP-2158.bam 24307267996 BAM aligned CPTAC3 24abdf0a-b891-45f1-b35b-25a6c725ab0a a99e501ee02944d7ce1fd17288a049ae { 'aliquot_tag': 'ALQ_9dd1a9a9', 'gdc_sample_type': 'Primary Tumor' } @@ -33097,16 +35324,16 @@ C3N-02828.miRNA-Seq.A C3N-02828 LUAD miRNA-Seq tissue_normal CPT0215770009 19072 C3N-02828.miRNA-Seq.A.hg38 C3N-02828 LUAD miRNA-Seq tissue_normal CPT0215770009 5c785f87-f11e-4bc7-85eb-119d418676fc_mirnaseq_gdc_realn.bam 300370427 BAM harmonized CPTAC3 fc09b733-222a-411d-b1c1-15c7119e2b6a 6078b4064e82ef48db9ef8b091fc8a7e { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02828.miRNA-Seq.T C3N-02828 LUAD miRNA-Seq tumor CPT0215730009 190828_UNC32-K00270_0200_BH7GVJBBXY_CAAAAG_S150_L007_R1_001.unaln.bam 183391279 BAM unaligned CPTAC3 0de1e184-2af4-47e1-8a91-3c708272ac1d fac8a3c035c703f6af26c3cfdead450e { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor' } C3N-02828.miRNA-Seq.T.hg38 C3N-02828 LUAD miRNA-Seq tumor CPT0215730009 f66892ec-c9bc-4e3d-baf2-ebfc8badf25c_mirnaseq_gdc_realn.bam 199442597 BAM harmonized CPTAC3 8be6e13e-49d1-4441-8c6e-d0c58c41585e a6527b1929a699dd67207a9c7753e663 { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02828.RNA-Seq.chimeric.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 6aef13a0-2f13-4b83-a287-4d89de867042.rna_seq.chimeric.gdc_realn.bam 23307277 BAM chimeric harmonized CPTAC3 daafc482-9e1e-4c26-abde-8c373c719cd2 6cbb60594308d611936353a5b0e6cc98 { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02828.RNA-Seq.chimeric.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 e48ee093-19c0-4295-9829-d1bcc1854854.rna_seq.chimeric.gdc_realn.bam 29891573 BAM chimeric harmonized CPTAC3 3d34feff-ac8d-48ab-8de4-1a75ceafd628 e8f3d9087fff55fc4844c988de4ec5fc { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02828.RNA-Seq.genomic.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 6aef13a0-2f13-4b83-a287-4d89de867042.rna_seq.genomic.gdc_realn.bam 10140178510 BAM genomic harmonized CPTAC3 8f021a35-0cab-40de-8995-c3a1e9b47a04 9bad62176159f425330e696a088a3425 { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02828.RNA-Seq.genomic.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 e48ee093-19c0-4295-9829-d1bcc1854854.rna_seq.genomic.gdc_realn.bam 13031430215 BAM genomic harmonized CPTAC3 30f319db-cc0b-4417-a1c8-5cd375fb61f3 7aefa3d50915adb985c8eb524f8b5e68 { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02828.RNA-Seq.R1_L008.A C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 190614_UNC32-K00270_0182_BH7777BBXY_CTAGCGCT-GTGTAGAC_S29_L008_R1_001.fastq.gz 3160603343 FASTQ R1_L008 unaligned CPTAC3 c63f259a-3fa4-4c94-b105-6ccbe98f5d94 b3c6dd0140757bc8b48fbfce3625cab5 { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02828.RNA-Seq.R1_L008.T C3N-02828 LUAD RNA-Seq tumor CPT0215730009 190604_UNC32-K00270_0177_AH7F5VBBXY_TCCAACGC-TTGGACTT_S32_L008_R1_001.fastq.gz 4182911729 FASTQ R1_L008 unaligned CPTAC3 42a981c7-80d4-446f-9577-60d6271eaa14 26414472431865e40856816773ba8420 { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02828.RNA-Seq.R2_L008.A C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 190614_UNC32-K00270_0182_BH7777BBXY_CTAGCGCT-GTGTAGAC_S29_L008_R2_001.fastq.gz 3441286145 FASTQ R2_L008 unaligned CPTAC3 8a40eb23-2d96-4857-9c58-0dc12467175a ae64ea748312eddbbae46d9e8e9218f9 { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02828.RNA-Seq.R2_L008.T C3N-02828 LUAD RNA-Seq tumor CPT0215730009 190604_UNC32-K00270_0177_AH7F5VBBXY_TCCAACGC-TTGGACTT_S32_L008_R2_001.fastq.gz 4723422530 FASTQ R2_L008 unaligned CPTAC3 43cca998-14a8-4d36-991d-7fa57b7f822f e69af08d06d22b4d39bdf5330f37c79a { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor' } -C3N-02828.RNA-Seq.transcriptome.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 6aef13a0-2f13-4b83-a287-4d89de867042.rna_seq.transcriptome.gdc_realn.bam 5688201136 BAM transcriptome harmonized CPTAC3 6c2d4a86-44f3-4855-a09d-16e7481a2da9 c37d05fb8ca3326c751457943d734c05 { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02828.RNA-Seq.transcriptome.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 e48ee093-19c0-4295-9829-d1bcc1854854.rna_seq.transcriptome.gdc_realn.bam 9475002428 BAM transcriptome harmonized CPTAC3 037a4391-69f0-4eb1-8ec2-5bebb5277932 8acc231a724019477b521ba009bd402a { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor' } +C3N-02828.RNA-Seq.chimeric.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 ba6aa3ec-8b8c-4e81-9c94-1728bb842486.rna_seq.chimeric.gdc_realn.bam 23289245 BAM chimeric harmonized CPTAC3 79e79191-c8b7-4683-a657-e0b4130c86c0 abb8f107f0ffa1a415a7545d579c18cd { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02828.RNA-Seq.chimeric.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 8dab4b96-0be9-4b3b-8bc5-f21494b6d628.rna_seq.chimeric.gdc_realn.bam 29880535 BAM chimeric harmonized CPTAC3 69fbeb94-2f69-4b7e-8899-80024a19dd5f ffc383ab682b7137fe3395ad0e818629 { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor' } +C3N-02828.RNA-Seq.genomic.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 ba6aa3ec-8b8c-4e81-9c94-1728bb842486.rna_seq.genomic.gdc_realn.bam 10141181169 BAM genomic harmonized CPTAC3 38990439-6f45-452e-8f17-661c2b04cfa2 66843c187e1c2bff36b966bb12307e31 { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02828.RNA-Seq.genomic.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 8dab4b96-0be9-4b3b-8bc5-f21494b6d628.rna_seq.genomic.gdc_realn.bam 13031503786 BAM genomic harmonized CPTAC3 62f344c7-8fff-4d6e-8511-8a0dfe3316e4 8a03f49ebe2d1378acc5cf7143857b2e { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor' } +C3N-02828.RNA-Seq.R1_L008.A C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 190614_UNC32-K00270_0182_BH7777BBXY_CTAGCGCT-GTGTAGAC_S29_L008_R1_001.fastq.gz 3160603343 FASTQ R1_L008 unaligned CPTAC3 c63f259a-3fa4-4c94-b105-6ccbe98f5d94 b3c6dd0140757bc8b48fbfce3625cab5 { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-02828.RNA-Seq.R1_L008.T C3N-02828 LUAD RNA-Seq tumor CPT0215730009 190604_UNC32-K00270_0177_AH7F5VBBXY_TCCAACGC-TTGGACTT_S32_L008_R1_001.fastq.gz 4182911729 FASTQ R1_L008 unaligned CPTAC3 42a981c7-80d4-446f-9577-60d6271eaa14 26414472431865e40856816773ba8420 { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02828.RNA-Seq.R2_L008.A C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 190614_UNC32-K00270_0182_BH7777BBXY_CTAGCGCT-GTGTAGAC_S29_L008_R2_001.fastq.gz 3441286145 FASTQ R2_L008 unaligned CPTAC3 8a40eb23-2d96-4857-9c58-0dc12467175a ae64ea748312eddbbae46d9e8e9218f9 { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-02828.RNA-Seq.R2_L008.T C3N-02828 LUAD RNA-Seq tumor CPT0215730009 190604_UNC32-K00270_0177_AH7F5VBBXY_TCCAACGC-TTGGACTT_S32_L008_R2_001.fastq.gz 4723422530 FASTQ R2_L008 unaligned CPTAC3 43cca998-14a8-4d36-991d-7fa57b7f822f e69af08d06d22b4d39bdf5330f37c79a { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02828.RNA-Seq.transcriptome.A.hg38 C3N-02828 LUAD RNA-Seq tissue_normal CPT0215770009 ba6aa3ec-8b8c-4e81-9c94-1728bb842486.rna_seq.transcriptome.gdc_realn.bam 6390313424 BAM transcriptome harmonized CPTAC3 2206c3ca-7963-424e-9cbe-9ad7028de41c 73a1b5cad0951ade51c0a9b07edb458a { 'aliquot_tag': 'ALQ_7e5a0c7e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02828.RNA-Seq.transcriptome.T.hg38 C3N-02828 LUAD RNA-Seq tumor CPT0215730009 8dab4b96-0be9-4b3b-8bc5-f21494b6d628.rna_seq.transcriptome.gdc_realn.bam 10659526208 BAM transcriptome harmonized CPTAC3 0d796210-1a2d-4b73-828b-4fd097ec2b7d cd99095912094e883ab8b2f83d3cdadd { 'aliquot_tag': 'ALQ_8bdaaabe', 'gdc_sample_type': 'Primary Tumor' } C3N-02828.WGS.N C3N-02828 LUAD WGS blood_normal CPT0215850002 CPT0215850002.WholeGenome.RP-1303.bam 62459536553 BAM aligned CPTAC3 8f3c8bbd-9a69-4633-9d07-86f628fa0593 575fdb042460192918d466103cda93cb { 'aliquot_tag': 'ALQ_621e3443', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02828.WGS.N.hg38 C3N-02828 LUAD WGS blood_normal CPT0215850002 6bf07321-701f-41d6-b0da-7d4e4463dd3c_wgs_gdc_realn.bam 91105046734 BAM harmonized CPTAC3 32f69432-cde6-41b3-91d2-3b66eeb81811 44b97b836fe813dff115ca341ea7dfb5 { 'aliquot_tag': 'ALQ_621e3443', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02828.WGS.T C3N-02828 LUAD WGS tumor CPT0215730006 CPT0215730006.WholeGenome.RP-1303.bam 57203844208 BAM aligned CPTAC3 b7b7c9b3-7e90-45ba-92a3-83c58a9a4bbc af4af440333876d84da6521aeb809303 { 'aliquot_tag': 'ALQ_1b65b72f', 'gdc_sample_type': 'Primary Tumor' } @@ -33125,16 +35352,16 @@ C3N-02916.miRNA-Seq.A C3N-02916 LUAD miRNA-Seq tissue_normal CPT0215950009 19071 C3N-02916.miRNA-Seq.A.hg38 C3N-02916 LUAD miRNA-Seq tissue_normal CPT0215950009 7041d936-d106-4263-86f5-fbda25a2addf_mirnaseq_gdc_realn.bam 229484080 BAM harmonized CPTAC3 02147db4-fbd8-4ef9-84f3-a9c2ea26839a b9ce874dca05d186809bf8ff6007df95 { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02916.miRNA-Seq.T C3N-02916 LUAD miRNA-Seq tumor CPT0215930009 190722_UNC31-K00269_0234_AH7VGTBBXY_CAACTA_S24_L004_R1_001.unaln.bam 224456500 BAM unaligned CPTAC3 22fd9325-ce9f-4148-83de-6cabee685507 2fc4c13060d7d92352024db368b19a59 { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor' } C3N-02916.miRNA-Seq.T.hg38 C3N-02916 LUAD miRNA-Seq tumor CPT0215930009 53819102-5f48-441b-b214-c7ec83d44fd9_mirnaseq_gdc_realn.bam 251821548 BAM harmonized CPTAC3 d26fea1d-5376-49bb-af5d-bcbfc0298131 25350a14a3dbeeef06ebd49eb3a78db6 { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor' } -C3N-02916.RNA-Seq.chimeric.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 d96def3f-8546-432b-b792-4b0cab31bffb.rna_seq.chimeric.gdc_realn.bam 33892446 BAM chimeric harmonized CPTAC3 7eeda224-7577-4049-9980-e0402b8cf32f 7c4cd2c1927e4772b520f58170b3d4f2 { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02916.RNA-Seq.chimeric.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 680c6562-a61f-4693-a1fb-f6b450119999.rna_seq.chimeric.gdc_realn.bam 37034592 BAM chimeric harmonized CPTAC3 9ad32aad-00b4-4433-b577-e06cb235741b c3f2026fdab9bfe9a5fad06902ae2749 { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor' } -C3N-02916.RNA-Seq.genomic.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 d96def3f-8546-432b-b792-4b0cab31bffb.rna_seq.genomic.gdc_realn.bam 7007517504 BAM genomic harmonized CPTAC3 44858a0e-aff8-4210-ac87-b3bc3fbc9186 024e030ecb72e631d2b54cc1c5b81e96 { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02916.RNA-Seq.genomic.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 680c6562-a61f-4693-a1fb-f6b450119999.rna_seq.genomic.gdc_realn.bam 12471531336 BAM genomic harmonized CPTAC3 e003aa78-0999-45f5-abea-5f70fb68794c d2a6d06114a4d19cfc39680d6861713c { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor' } -C3N-02916.RNA-Seq.R1_L002.A C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 190621_UNC32-K00270_0184_AH7CLLBBXY_CGGCGTGA-GCGCCTGT_S8_L002_R1_001.fastq.gz 2823535156 FASTQ R1_L002 unaligned CPTAC3 62e5b863-96e9-4cee-885d-62847c273d7a e5dbdb097f0d68bbb3bf57c5ec42a763 { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02916.RNA-Seq.R1_L007.T C3N-02916 LUAD RNA-Seq tumor CPT0215930009 190604_UNC32-K00270_0177_AH7F5VBBXY_CCGTGAAG-CAGTGGAT_S25_L007_R1_001.fastq.gz 4249643387 FASTQ R1_L007 unaligned CPTAC3 a2a8ca66-70e4-4650-a1ad-9671fcb029a6 612ed46e2e74dbed55073dcdcf194577 { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor' } -C3N-02916.RNA-Seq.R2_L002.A C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 190621_UNC32-K00270_0184_AH7CLLBBXY_CGGCGTGA-GCGCCTGT_S8_L002_R2_001.fastq.gz 3355523451 FASTQ R2_L002 unaligned CPTAC3 122fc75e-1587-4cc9-9b32-179cdf23d699 fb5a07b5d813c80d0eb2eddf3d830523 { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02916.RNA-Seq.R2_L007.T C3N-02916 LUAD RNA-Seq tumor CPT0215930009 190604_UNC32-K00270_0177_AH7F5VBBXY_CCGTGAAG-CAGTGGAT_S25_L007_R2_001.fastq.gz 4713666263 FASTQ R2_L007 unaligned CPTAC3 ad61b750-3b70-4238-82b3-d3d7a1f1edaa f92bba2bd0f496611935dfe3f3d059e0 { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor' } -C3N-02916.RNA-Seq.transcriptome.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 d96def3f-8546-432b-b792-4b0cab31bffb.rna_seq.transcriptome.gdc_realn.bam 5698853363 BAM transcriptome harmonized CPTAC3 db2b030e-8593-4728-9965-df4c78298665 7d331b123ff0fc333099029d779db04b { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02916.RNA-Seq.transcriptome.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 680c6562-a61f-4693-a1fb-f6b450119999.rna_seq.transcriptome.gdc_realn.bam 8712257104 BAM transcriptome harmonized CPTAC3 eb39943c-bddf-4132-b00d-6313ee9907d2 2879a164ec28022d7079e9f00592302c { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor' } +C3N-02916.RNA-Seq.chimeric.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 98930097-4cce-4750-8839-156d1075d6ca.rna_seq.chimeric.gdc_realn.bam 33886586 BAM chimeric harmonized CPTAC3 83afeeaa-3c01-46b7-a71f-1bf5cccc04b5 786b9faff7bad4908cd1c2ae1ae73ed6 { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02916.RNA-Seq.chimeric.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 bb046a66-a7ea-48dd-97f7-a22ec7dfcc42.rna_seq.chimeric.gdc_realn.bam 37018701 BAM chimeric harmonized CPTAC3 a5cbfa61-9585-441d-996e-48246ae2a2d9 dc73686c9a8b00e33a025adedffb8e68 { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor' } +C3N-02916.RNA-Seq.genomic.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 98930097-4cce-4750-8839-156d1075d6ca.rna_seq.genomic.gdc_realn.bam 7008480874 BAM genomic harmonized CPTAC3 4afec2f0-3e6a-4bc8-ac42-7f0e2b72775d 21dec993f1de1f4943e9fa5ae179b03e { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02916.RNA-Seq.genomic.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 bb046a66-a7ea-48dd-97f7-a22ec7dfcc42.rna_seq.genomic.gdc_realn.bam 12473098556 BAM genomic harmonized CPTAC3 b5ecb523-b21c-4233-a52b-fc09a13b916b 8e1ad7e406a335d96cc751a6b25be4aa { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor' } +C3N-02916.RNA-Seq.R1_L002.A C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 190621_UNC32-K00270_0184_AH7CLLBBXY_CGGCGTGA-GCGCCTGT_S8_L002_R1_001.fastq.gz 2823535156 FASTQ R1_L002 unaligned CPTAC3 62e5b863-96e9-4cee-885d-62847c273d7a e5dbdb097f0d68bbb3bf57c5ec42a763 { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02916.RNA-Seq.R1_L007.T C3N-02916 LUAD RNA-Seq tumor CPT0215930009 190604_UNC32-K00270_0177_AH7F5VBBXY_CCGTGAAG-CAGTGGAT_S25_L007_R1_001.fastq.gz 4249643387 FASTQ R1_L007 unaligned CPTAC3 a2a8ca66-70e4-4650-a1ad-9671fcb029a6 612ed46e2e74dbed55073dcdcf194577 { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02916.RNA-Seq.R2_L002.A C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 190621_UNC32-K00270_0184_AH7CLLBBXY_CGGCGTGA-GCGCCTGT_S8_L002_R2_001.fastq.gz 3355523451 FASTQ R2_L002 unaligned CPTAC3 122fc75e-1587-4cc9-9b32-179cdf23d699 fb5a07b5d813c80d0eb2eddf3d830523 { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02916.RNA-Seq.R2_L007.T C3N-02916 LUAD RNA-Seq tumor CPT0215930009 190604_UNC32-K00270_0177_AH7F5VBBXY_CCGTGAAG-CAGTGGAT_S25_L007_R2_001.fastq.gz 4713666263 FASTQ R2_L007 unaligned CPTAC3 ad61b750-3b70-4238-82b3-d3d7a1f1edaa f92bba2bd0f496611935dfe3f3d059e0 { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02916.RNA-Seq.transcriptome.A.hg38 C3N-02916 LUAD RNA-Seq tissue_normal CPT0215950009 98930097-4cce-4750-8839-156d1075d6ca.rna_seq.transcriptome.gdc_realn.bam 6434138771 BAM transcriptome harmonized CPTAC3 a9f57008-cbb4-4deb-bd4e-c1189d5d6b3e 87363621dc22fd77461145e7286fec02 { 'aliquot_tag': 'ALQ_3e903e6e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02916.RNA-Seq.transcriptome.T.hg38 C3N-02916 LUAD RNA-Seq tumor CPT0215930009 bb046a66-a7ea-48dd-97f7-a22ec7dfcc42.rna_seq.transcriptome.gdc_realn.bam 9796922354 BAM transcriptome harmonized CPTAC3 05a90a44-f028-4219-9241-498c9045004f 944d303fd153ed2a0ec5f731e9f9f2c1 { 'aliquot_tag': 'ALQ_b1d0cbce', 'gdc_sample_type': 'Primary Tumor' } C3N-02916.WGS.N C3N-02916 LUAD WGS blood_normal CPT0216030002 CPT0216030002.WholeGenome.RP-1303.bam 66651850484 BAM aligned CPTAC3 636e364b-d40c-427b-b620-0e783b089d6e 62e9e6dc45b1b1394a7e286564ac9770 { 'aliquot_tag': 'ALQ_30e55913', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02916.WGS.N.hg38 C3N-02916 LUAD WGS blood_normal CPT0216030002 ad53e3c8-12dd-45ed-80c5-43c6ec9efa20_wgs_gdc_realn.bam 96625085436 BAM harmonized CPTAC3 ff85602f-9761-48a1-836b-21a28938b9c6 d5cbac8b20eff6c1f7055499f8324712 { 'aliquot_tag': 'ALQ_30e55913', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02916.WGS.T C3N-02916 LUAD WGS tumor CPT0215930006 CPT0215930006.WholeGenome.RP-1303.bam 56765471490 BAM aligned CPTAC3 0fc87cf6-1d09-40e0-9ef1-4324104d7ec5 8c12574aa207be79e0fa2eee8df22b13 { 'aliquot_tag': 'ALQ_216fd65f', 'gdc_sample_type': 'Primary Tumor' } @@ -33153,16 +35380,16 @@ C3N-02919.miRNA-Seq.A C3N-02919 LUAD miRNA-Seq tissue_normal CPT0216130010 19071 C3N-02919.miRNA-Seq.A.hg38 C3N-02919 LUAD miRNA-Seq tissue_normal CPT0216130010 5e88d29b-5d45-4d81-b7fd-b53f212c5529_mirnaseq_gdc_realn.bam 234663566 BAM harmonized CPTAC3 c324d625-9b34-4fdb-a970-9fdbc5eab355 03baa8a9251f24ec5d90686806342cd7 { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02919.miRNA-Seq.T C3N-02919 LUAD miRNA-Seq tumor CPT0216100010 190712_UNC32-K00270_0192_BH7HL3BBXY_GGCTAC_S34_L005_R1_001.unaln.bam 163416097 BAM unaligned CPTAC3 87b63c8e-266c-406e-a2fc-4c5e6bd68df3 682d1ab8f215241ab57b4a8ad5a95a16 { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor' } C3N-02919.miRNA-Seq.T.hg38 C3N-02919 LUAD miRNA-Seq tumor CPT0216100010 cca011bd-9171-42bf-8903-c0c1beae8e89_mirnaseq_gdc_realn.bam 181998867 BAM harmonized CPTAC3 ca43d960-67e1-42ea-8136-9fc9289fa3cd a9445eb1f03db6d16de27d0fc7df5a40 { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02919.RNA-Seq.chimeric.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 45d78f96-987c-4655-b11f-767258f05b30.rna_seq.chimeric.gdc_realn.bam 43887283 BAM chimeric harmonized CPTAC3 246f2e48-4af1-4244-abf1-eb82f74da10f 5e75d3bd0ba3417ec217d14e0a842aa3 { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02919.RNA-Seq.chimeric.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 2687af73-2549-47fa-859e-8d4551957b39.rna_seq.chimeric.gdc_realn.bam 28240276 BAM chimeric harmonized CPTAC3 0cd997bb-5ebe-41b0-b8b7-38b8eaca4056 f006a783d348cfc01062afffa36ea88a { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02919.RNA-Seq.genomic.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 45d78f96-987c-4655-b11f-767258f05b30.rna_seq.genomic.gdc_realn.bam 9779510662 BAM genomic harmonized CPTAC3 353244d9-3167-43d7-9d02-25288c553ce6 a99b1c3fd9e30f96b5e2da2e5d47f895 { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02919.RNA-Seq.genomic.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 2687af73-2549-47fa-859e-8d4551957b39.rna_seq.genomic.gdc_realn.bam 7039235708 BAM genomic harmonized CPTAC3 5bb515ad-87fc-4955-955a-6d23d6d001ee 68fce0d756dac066e7b04d8e34669595 { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02919.RNA-Seq.R1_L006.A C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 190621_UNC32-K00270_0185_BH7G72BBXY_AGCTCGCT-GCAGAATC_S23_L006_R1_001.fastq.gz 4836850627 FASTQ R1_L006 unaligned CPTAC3 035d916b-9f18-4500-8476-23c62a245c0e 3fadf4a6a2ffb8745b2b5bd1d43c025a { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02919.RNA-Seq.R1_L008.T C3N-02919 LUAD RNA-Seq tumor CPT0216100010 190702_UNC32-K00270_0188_BH7CLJBBXY_GATCTATC-ATGAGGCT_S32_L008_R1_001.fastq.gz 3009547640 FASTQ R1_L008 unaligned CPTAC3 dd6883bd-1c4e-4463-a454-1fae413f67ff ffea8d99cd53bb2e41659ff4795913b8 { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02919.RNA-Seq.R2_L006.A C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 190621_UNC32-K00270_0185_BH7G72BBXY_AGCTCGCT-GCAGAATC_S23_L006_R2_001.fastq.gz 5163596208 FASTQ R2_L006 unaligned CPTAC3 806d7768-6d24-4976-a789-8be6df07fdba 2baf2346cf45964d0ae18d0a4d880fb2 { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02919.RNA-Seq.R2_L008.T C3N-02919 LUAD RNA-Seq tumor CPT0216100010 190702_UNC32-K00270_0188_BH7CLJBBXY_GATCTATC-ATGAGGCT_S32_L008_R2_001.fastq.gz 3462130922 FASTQ R2_L008 unaligned CPTAC3 d1d44d98-a7a7-45b4-8287-22fc1b7b8c0f c049edc19d6c57e01c0bbdda519de887 { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02919.RNA-Seq.transcriptome.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 45d78f96-987c-4655-b11f-767258f05b30.rna_seq.transcriptome.gdc_realn.bam 10012252994 BAM transcriptome harmonized CPTAC3 dfaa10eb-2b43-4f20-b7ef-225b7fff5d85 e5d5febf295b59ea22ce0e1603e84a90 { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02919.RNA-Seq.transcriptome.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 2687af73-2549-47fa-859e-8d4551957b39.rna_seq.transcriptome.gdc_realn.bam 6838296225 BAM transcriptome harmonized CPTAC3 4a42c137-d02b-4f72-87fd-403152c9a736 70816113e333f2f9b97c50385a15d313 { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02919.RNA-Seq.chimeric.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 0d3d1930-22b1-4c1d-b176-6a40b4686a88.rna_seq.chimeric.gdc_realn.bam 43871233 BAM chimeric harmonized CPTAC3 514f9fe6-9e3f-45cc-9316-db40c70f773e 1ebbca7403a8762e64f6130f1ae0bfe8 { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02919.RNA-Seq.chimeric.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 a8467233-fc18-498f-8ce7-add7286ec7d3.rna_seq.chimeric.gdc_realn.bam 28237731 BAM chimeric harmonized CPTAC3 4ab08eec-79fb-4723-b5c9-cd778b74c8e7 9874a9a22e4895c2370801ff82323bee { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02919.RNA-Seq.genomic.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 0d3d1930-22b1-4c1d-b176-6a40b4686a88.rna_seq.genomic.gdc_realn.bam 9781059279 BAM genomic harmonized CPTAC3 0006f87b-aa44-4ba7-a6e3-2e3be4474700 9e3b4750e0fda3bd1d5ab0bc7ecfe2f1 { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02919.RNA-Seq.genomic.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 a8467233-fc18-498f-8ce7-add7286ec7d3.rna_seq.genomic.gdc_realn.bam 7039798745 BAM genomic harmonized CPTAC3 3ba893e9-7cd4-4151-996d-957a2f1de3ba 0e69a5cfae949f76c3a4ccfe9bda03c5 { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02919.RNA-Seq.R1_L006.A C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 190621_UNC32-K00270_0185_BH7G72BBXY_AGCTCGCT-GCAGAATC_S23_L006_R1_001.fastq.gz 4836850627 FASTQ R1_L006 unaligned CPTAC3 035d916b-9f18-4500-8476-23c62a245c0e 3fadf4a6a2ffb8745b2b5bd1d43c025a { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02919.RNA-Seq.R1_L008.T C3N-02919 LUAD RNA-Seq tumor CPT0216100010 190702_UNC32-K00270_0188_BH7CLJBBXY_GATCTATC-ATGAGGCT_S32_L008_R1_001.fastq.gz 3009547640 FASTQ R1_L008 unaligned CPTAC3 dd6883bd-1c4e-4463-a454-1fae413f67ff ffea8d99cd53bb2e41659ff4795913b8 { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02919.RNA-Seq.R2_L006.A C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 190621_UNC32-K00270_0185_BH7G72BBXY_AGCTCGCT-GCAGAATC_S23_L006_R2_001.fastq.gz 5163596208 FASTQ R2_L006 unaligned CPTAC3 806d7768-6d24-4976-a789-8be6df07fdba 2baf2346cf45964d0ae18d0a4d880fb2 { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02919.RNA-Seq.R2_L008.T C3N-02919 LUAD RNA-Seq tumor CPT0216100010 190702_UNC32-K00270_0188_BH7CLJBBXY_GATCTATC-ATGAGGCT_S32_L008_R2_001.fastq.gz 3462130922 FASTQ R2_L008 unaligned CPTAC3 d1d44d98-a7a7-45b4-8287-22fc1b7b8c0f c049edc19d6c57e01c0bbdda519de887 { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02919.RNA-Seq.transcriptome.A.hg38 C3N-02919 LUAD RNA-Seq tissue_normal CPT0216130010 0d3d1930-22b1-4c1d-b176-6a40b4686a88.rna_seq.transcriptome.gdc_realn.bam 11315553210 BAM transcriptome harmonized CPTAC3 990fbd0b-d08d-4df3-a34e-88a793d353f9 f604e6a8f84d97a9236626fcfa49af6e { 'aliquot_tag': 'ALQ_cacdadb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02919.RNA-Seq.transcriptome.T.hg38 C3N-02919 LUAD RNA-Seq tumor CPT0216100010 a8467233-fc18-498f-8ce7-add7286ec7d3.rna_seq.transcriptome.gdc_realn.bam 7566725579 BAM transcriptome harmonized CPTAC3 93c302eb-c252-48e1-adae-87b431f9acaf 263847b9d891161dfe8a59ac6b43d94c { 'aliquot_tag': 'ALQ_4b0ca00b', 'gdc_sample_type': 'Primary Tumor' } C3N-02919.WGS.N C3N-02919 LUAD WGS blood_normal CPT0216210002 CPT0216210002.WholeGenome.RP-1303.bam 58373119348 BAM aligned CPTAC3 971c40c8-3bff-4f93-a6fd-cd174153e9c6 595861938303dee14df6fba5136521f6 { 'aliquot_tag': 'ALQ_7edab78', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02919.WGS.N.hg38 C3N-02919 LUAD WGS blood_normal CPT0216210002 953b0568-9522-498c-aee6-c1fb78164d87_wgs_gdc_realn.bam 84908614613 BAM harmonized CPTAC3 40c324e5-419d-4c42-be84-6a2a4009bebc 9881465e0b2a59c730d340a512f949f5 { 'aliquot_tag': 'ALQ_7edab78', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02919.WGS.T C3N-02919 LUAD WGS tumor CPT0216100007 CPT0216100007.WholeGenome.RP-1303.bam 69478095156 BAM aligned CPTAC3 eca9774d-5eaa-4c2a-9cc2-95a39e6bbb94 755364999d0f8ef1ef44c9c45e68808d { 'aliquot_tag': 'ALQ_cc7304e9', 'gdc_sample_type': 'Primary Tumor' } @@ -33181,16 +35408,16 @@ C3N-02920.miRNA-Seq.A C3N-02920 LUAD miRNA-Seq tissue_normal CPT0216310009 19071 C3N-02920.miRNA-Seq.A.hg38 C3N-02920 LUAD miRNA-Seq tissue_normal CPT0216310009 4b48994e-1a31-45c2-a2c1-1008190b16ba_mirnaseq_gdc_realn.bam 193145538 BAM harmonized CPTAC3 09996913-c2d5-4e95-8f52-b0ab59088cc4 f7b1fbf8280d76f678f3e0012bccbae0 { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02920.miRNA-Seq.T C3N-02920 LUAD miRNA-Seq tumor CPT0216290009 190722_UNC31-K00269_0234_AH7VGTBBXY_GATCAG_S5_L005_R1_001.unaln.bam 183678300 BAM unaligned CPTAC3 7047d914-598f-4bd5-b821-ebac4e137c83 9664a66c17cd21bd754787a269c62672 { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor' } C3N-02920.miRNA-Seq.T.hg38 C3N-02920 LUAD miRNA-Seq tumor CPT0216290009 75a1ee2e-bcb7-4d26-8f5c-8fd50d955835_mirnaseq_gdc_realn.bam 205659615 BAM harmonized CPTAC3 e4505fe3-97b8-4536-9863-2648b01c4f44 5ff27b16f93680641e1ef2175529dc6b { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor' } -C3N-02920.RNA-Seq.chimeric.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 3ee10eb9-4c43-4bb1-8bb4-9e006936aab6.rna_seq.chimeric.gdc_realn.bam 46897579 BAM chimeric harmonized CPTAC3 8766f6c4-8753-47fa-a3c2-8d9bad4f539b 0b4d9d6474726a45fa849d3340578fc2 { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02920.RNA-Seq.chimeric.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 91ffa7dc-54d4-44a2-a7d9-a4cd06ca0256.rna_seq.chimeric.gdc_realn.bam 33178570 BAM chimeric harmonized CPTAC3 d55d8d63-751e-41de-9f0f-e348e5553038 98d148002d8005bcc1a7fcad787cea1e { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor' } -C3N-02920.RNA-Seq.genomic.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 3ee10eb9-4c43-4bb1-8bb4-9e006936aab6.rna_seq.genomic.gdc_realn.bam 7873673191 BAM genomic harmonized CPTAC3 d2dfdc3e-874c-4404-b419-01b741695962 7a35439d0f0726bff6fa2fee38abd6f8 { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02920.RNA-Seq.genomic.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 91ffa7dc-54d4-44a2-a7d9-a4cd06ca0256.rna_seq.genomic.gdc_realn.bam 11281201172 BAM genomic harmonized CPTAC3 bfedf63e-44e5-484b-bddc-f063ddda8518 fc041232497b5424c0b921831cfab01a { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor' } -C3N-02920.RNA-Seq.R1_L004.A C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 190717_UNC31-K00269_0233_BH7HG5BBXY_GGCTTAAG-TCGTGACC_S14_L004_R1_001.fastq.gz 3585738159 FASTQ R1_L004 unaligned CPTAC3 8dc939d3-9709-4d6e-9ecc-10f93d866946 0c016ae583be8287664dffa7f07fc391 { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02920.RNA-Seq.R1_L004.T C3N-02920 LUAD RNA-Seq tumor CPT0216290009 190607_UNC32-K00270_0179_BH75W2BBXY_AGTTCAGG-CCAACAGA_S15_L004_R1_001.fastq.gz 4054240221 FASTQ R1_L004 unaligned CPTAC3 7bad4bc6-3826-4337-aaee-7fc7b7bdba87 36d695754f8785d02143bba6f57deb9f { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor' } -C3N-02920.RNA-Seq.R2_L004.A C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 190717_UNC31-K00269_0233_BH7HG5BBXY_GGCTTAAG-TCGTGACC_S14_L004_R2_001.fastq.gz 3641266628 FASTQ R2_L004 unaligned CPTAC3 dc2a0bbd-c9ba-4d4c-af0f-a04c16588529 928f05329f6bc8d61e7638cabfe7f46f { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02920.RNA-Seq.R2_L004.T C3N-02920 LUAD RNA-Seq tumor CPT0216290009 190607_UNC32-K00270_0179_BH75W2BBXY_AGTTCAGG-CCAACAGA_S15_L004_R2_001.fastq.gz 4580137441 FASTQ R2_L004 unaligned CPTAC3 ee358250-2f35-46d0-adf9-e3b48f1f147a 58b50bffff1ee964bf2c70a7ac4e66a2 { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor' } -C3N-02920.RNA-Seq.transcriptome.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 3ee10eb9-4c43-4bb1-8bb4-9e006936aab6.rna_seq.transcriptome.gdc_realn.bam 7002631642 BAM transcriptome harmonized CPTAC3 367c8149-595a-4946-8ff6-24f7f6db9e77 520c1b2d684b87aa1c4bd151a4a7459e { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02920.RNA-Seq.transcriptome.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 91ffa7dc-54d4-44a2-a7d9-a4cd06ca0256.rna_seq.transcriptome.gdc_realn.bam 8940901478 BAM transcriptome harmonized CPTAC3 1a124e28-6dc6-4ff4-bdb2-61143f6bc9c6 ecdf09b94cb77d0b9ab871fe8e2c1f48 { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor' } +C3N-02920.RNA-Seq.chimeric.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 05a0f3c7-f92a-4959-8cee-a6ba4f7562e7.rna_seq.chimeric.gdc_realn.bam 46885061 BAM chimeric harmonized CPTAC3 97838c93-6a84-4907-9cfc-f2ea4be2f8cb 0dace3de87f14b9491bcdfbc6abeaeac { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02920.RNA-Seq.chimeric.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 27cef13c-e561-47ee-b8c2-fcf494658ddc.rna_seq.chimeric.gdc_realn.bam 33172104 BAM chimeric harmonized CPTAC3 f70eaddb-6fed-4a93-91b1-a44c1a72fc9c 793a97cb289306f2ea824ae504f4b3e2 { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor' } +C3N-02920.RNA-Seq.genomic.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 05a0f3c7-f92a-4959-8cee-a6ba4f7562e7.rna_seq.genomic.gdc_realn.bam 7874690207 BAM genomic harmonized CPTAC3 d14f86d6-64de-4e6b-8a1e-0dd7510e0939 aa9632723ca8b77a4917b7c20155dea2 { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02920.RNA-Seq.genomic.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 27cef13c-e561-47ee-b8c2-fcf494658ddc.rna_seq.genomic.gdc_realn.bam 11282027719 BAM genomic harmonized CPTAC3 d0fa215a-893f-41af-86e0-740a1c272450 90ef45ac1fe12cc63fd0e8782d1e0815 { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor' } +C3N-02920.RNA-Seq.R1_L004.A C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 190717_UNC31-K00269_0233_BH7HG5BBXY_GGCTTAAG-TCGTGACC_S14_L004_R1_001.fastq.gz 3585738159 FASTQ R1_L004 unaligned CPTAC3 8dc939d3-9709-4d6e-9ecc-10f93d866946 0c016ae583be8287664dffa7f07fc391 { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02920.RNA-Seq.R1_L004.T C3N-02920 LUAD RNA-Seq tumor CPT0216290009 190607_UNC32-K00270_0179_BH75W2BBXY_AGTTCAGG-CCAACAGA_S15_L004_R1_001.fastq.gz 4054240221 FASTQ R1_L004 unaligned CPTAC3 7bad4bc6-3826-4337-aaee-7fc7b7bdba87 36d695754f8785d02143bba6f57deb9f { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02920.RNA-Seq.R2_L004.A C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 190717_UNC31-K00269_0233_BH7HG5BBXY_GGCTTAAG-TCGTGACC_S14_L004_R2_001.fastq.gz 3641266628 FASTQ R2_L004 unaligned CPTAC3 dc2a0bbd-c9ba-4d4c-af0f-a04c16588529 928f05329f6bc8d61e7638cabfe7f46f { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02920.RNA-Seq.R2_L004.T C3N-02920 LUAD RNA-Seq tumor CPT0216290009 190607_UNC32-K00270_0179_BH75W2BBXY_AGTTCAGG-CCAACAGA_S15_L004_R2_001.fastq.gz 4580137441 FASTQ R2_L004 unaligned CPTAC3 ee358250-2f35-46d0-adf9-e3b48f1f147a 58b50bffff1ee964bf2c70a7ac4e66a2 { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02920.RNA-Seq.transcriptome.A.hg38 C3N-02920 LUAD RNA-Seq tissue_normal CPT0216310009 05a0f3c7-f92a-4959-8cee-a6ba4f7562e7.rna_seq.transcriptome.gdc_realn.bam 7969053901 BAM transcriptome harmonized CPTAC3 260f4d86-eed8-4ac6-863a-919007694df8 7a1e0e380a3da6aebda8fbd8309df89c { 'aliquot_tag': 'ALQ_5b63a155', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02920.RNA-Seq.transcriptome.T.hg38 C3N-02920 LUAD RNA-Seq tumor CPT0216290009 27cef13c-e561-47ee-b8c2-fcf494658ddc.rna_seq.transcriptome.gdc_realn.bam 10019765126 BAM transcriptome harmonized CPTAC3 7cf8f7ce-6ee7-4a26-975a-2a26b4bfb5df 1e31c31df40803f934e3260f7a7f9876 { 'aliquot_tag': 'ALQ_a04f3931', 'gdc_sample_type': 'Primary Tumor' } C3N-02920.WGS.N C3N-02920 LUAD WGS blood_normal CPT0216390002 CPT0216390002.WholeGenome.RP-1303.bam 66033213317 BAM aligned CPTAC3 36fdbd6a-5457-40fb-a53e-b5fbd33cca1f a4fa19976db29ff0159e0ebe0c4113fa { 'aliquot_tag': 'ALQ_fcc1331c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02920.WGS.N.hg38 C3N-02920 LUAD WGS blood_normal CPT0216390002 1b1c55fb-ec4d-425b-8341-4b72b1e6fc81_wgs_gdc_realn.bam 98882106593 BAM harmonized CPTAC3 616e2f18-ef37-446e-874e-340c0ee33e81 9401c1fe66400fa91f6b59eb5744cf8f { 'aliquot_tag': 'ALQ_fcc1331c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02920.WGS.T C3N-02920 LUAD WGS tumor CPT0216290006 CPT0216290006.WholeGenome.RP-1303.bam 78577604282 BAM aligned CPTAC3 0a444abd-f237-4b70-a512-f025414434f2 41806ac1786ece94f378842eec8fdcc8 { 'aliquot_tag': 'ALQ_30f024a0', 'gdc_sample_type': 'Primary Tumor' } @@ -33209,16 +35436,16 @@ C3N-02922.miRNA-Seq.A C3N-02922 LUAD miRNA-Seq tissue_normal CPT0216490009 19071 C3N-02922.miRNA-Seq.A.hg38 C3N-02922 LUAD miRNA-Seq tissue_normal CPT0216490009 17e66ba4-b244-4a0d-ac2c-873cf45e9d66_mirnaseq_gdc_realn.bam 261450137 BAM harmonized CPTAC3 ba5bd037-790b-415a-b83c-e88303f4c56e ff5977c81ab4489afbab368bac8c5bad { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02922.miRNA-Seq.T C3N-02922 LUAD miRNA-Seq tumor CPT0216480009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATTCCT_S23_L004_R1_001.unaln.bam 146576186 BAM unaligned CPTAC3 715df405-4404-43f5-92eb-7e9cbac8ef99 11b099f35918b9d96ce2a6b0488223b6 { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor' } C3N-02922.miRNA-Seq.T.hg38 C3N-02922 LUAD miRNA-Seq tumor CPT0216480009 5927fa2e-1461-4f06-beba-146749bd039c_mirnaseq_gdc_realn.bam 162062195 BAM harmonized CPTAC3 50df6007-dec6-4ce9-ac24-c16c19d1bd5a a9bd54bf2abfd156571f92da1fd21116 { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02922.RNA-Seq.chimeric.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 54b716bc-04e2-4466-82cc-a7751e7783e3.rna_seq.chimeric.gdc_realn.bam 41555206 BAM chimeric harmonized CPTAC3 597764cf-e6b8-4b5d-aca1-f4d87b42a6a3 36920bb445a32e8afaaf6b3a1b50d34a { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02922.RNA-Seq.chimeric.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 dbee198d-0751-4b5b-9470-efa7425c3edf.rna_seq.chimeric.gdc_realn.bam 34812297 BAM chimeric harmonized CPTAC3 ac7c9825-fd43-4a2c-878e-29cbbe79d00c 825e1b22cb721fbb5b77c0e160992a0d { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02922.RNA-Seq.genomic.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 54b716bc-04e2-4466-82cc-a7751e7783e3.rna_seq.genomic.gdc_realn.bam 6927601039 BAM genomic harmonized CPTAC3 c74ca659-59b9-4c97-a718-ec5627f40dfb b3d2862874a2885e7226e3b50a366226 { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02922.RNA-Seq.genomic.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 dbee198d-0751-4b5b-9470-efa7425c3edf.rna_seq.genomic.gdc_realn.bam 13614288148 BAM genomic harmonized CPTAC3 7fbf2a77-fcb0-40cc-8248-2974a455b947 789f7ca840a59f4f0bbb13752d7ab3f8 { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02922.RNA-Seq.R1_L004.A C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 190717_UNC31-K00269_0233_BH7HG5BBXY_AATCCGGA-CTACAGTT_S13_L004_R1_001.fastq.gz 2974470329 FASTQ R1_L004 unaligned CPTAC3 38ff721c-4f93-4a74-bfa7-35315250e9c8 1a026c930f8e04153333565f7e601cda { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02922.RNA-Seq.R1_L008.T C3N-02922 LUAD RNA-Seq tumor CPT0216480009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTTGGTAT-CCAAGTCC_S31_L008_R1_001.fastq.gz 4303484567 FASTQ R1_L008 unaligned CPTAC3 44aaf0e6-3695-4824-9dc9-bd53de11c1a6 7bb775e83114efbe57eb44eaef634c98 { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02922.RNA-Seq.R2_L004.A C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 190717_UNC31-K00269_0233_BH7HG5BBXY_AATCCGGA-CTACAGTT_S13_L004_R2_001.fastq.gz 3139821052 FASTQ R2_L004 unaligned CPTAC3 b5751eba-377d-4ec1-b82f-3a3d5197ecfb 1ff192fc02c93383ebe923cd9e63b588 { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02922.RNA-Seq.R2_L008.T C3N-02922 LUAD RNA-Seq tumor CPT0216480009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTTGGTAT-CCAAGTCC_S31_L008_R2_001.fastq.gz 4805757730 FASTQ R2_L008 unaligned CPTAC3 702cdbe5-5824-4df3-b7d6-8f8c6c6b8754 6990ebd55d447761a473f935f0d0eda7 { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02922.RNA-Seq.transcriptome.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 54b716bc-04e2-4466-82cc-a7751e7783e3.rna_seq.transcriptome.gdc_realn.bam 6535465264 BAM transcriptome harmonized CPTAC3 f5bd414b-f2c7-408c-8062-d34bcbc3d138 e599f0ee7d21988f8bf0988fe2741046 { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02922.RNA-Seq.transcriptome.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 dbee198d-0751-4b5b-9470-efa7425c3edf.rna_seq.transcriptome.gdc_realn.bam 9093976787 BAM transcriptome harmonized CPTAC3 396dc1ff-40b5-4039-b97f-c5bae0a472ee 9e72aac947e46ca1a17e419d95e055b9 { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02922.RNA-Seq.chimeric.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 d7a679a5-1500-4bd1-aa63-57fb6d6b956f.rna_seq.chimeric.gdc_realn.bam 41548503 BAM chimeric harmonized CPTAC3 b003629f-dcdb-4489-bc66-f8f624e004b8 1e34230d846f67fe8c754ec12b45bb6c { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02922.RNA-Seq.chimeric.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 5e93cf13-36d0-472c-8819-9b8cd31058d5.rna_seq.chimeric.gdc_realn.bam 34819600 BAM chimeric harmonized CPTAC3 d0a10f1a-8759-41ba-8101-0e01312b9d5d b8f2b834b72efaf92339551503fa52b8 { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02922.RNA-Seq.genomic.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 d7a679a5-1500-4bd1-aa63-57fb6d6b956f.rna_seq.genomic.gdc_realn.bam 6928771810 BAM genomic harmonized CPTAC3 68018dbf-5b4b-49fb-a1b5-decb87e586a6 950652612c9129e4e4e7e31250dbb228 { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02922.RNA-Seq.genomic.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 5e93cf13-36d0-472c-8819-9b8cd31058d5.rna_seq.genomic.gdc_realn.bam 13615418189 BAM genomic harmonized CPTAC3 a7c117d1-61f1-4b0e-a5d3-d2b1f712b694 c3bd44d6ac44f3188389c5edaa3cc89f { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02922.RNA-Seq.R1_L004.A C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 190717_UNC31-K00269_0233_BH7HG5BBXY_AATCCGGA-CTACAGTT_S13_L004_R1_001.fastq.gz 2974470329 FASTQ R1_L004 unaligned CPTAC3 38ff721c-4f93-4a74-bfa7-35315250e9c8 1a026c930f8e04153333565f7e601cda { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02922.RNA-Seq.R1_L008.T C3N-02922 LUAD RNA-Seq tumor CPT0216480009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTTGGTAT-CCAAGTCC_S31_L008_R1_001.fastq.gz 4303484567 FASTQ R1_L008 unaligned CPTAC3 44aaf0e6-3695-4824-9dc9-bd53de11c1a6 7bb775e83114efbe57eb44eaef634c98 { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02922.RNA-Seq.R2_L004.A C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 190717_UNC31-K00269_0233_BH7HG5BBXY_AATCCGGA-CTACAGTT_S13_L004_R2_001.fastq.gz 3139821052 FASTQ R2_L004 unaligned CPTAC3 b5751eba-377d-4ec1-b82f-3a3d5197ecfb 1ff192fc02c93383ebe923cd9e63b588 { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02922.RNA-Seq.R2_L008.T C3N-02922 LUAD RNA-Seq tumor CPT0216480009 190604_UNC32-K00270_0177_AH7F5VBBXY_CTTGGTAT-CCAAGTCC_S31_L008_R2_001.fastq.gz 4805757730 FASTQ R2_L008 unaligned CPTAC3 702cdbe5-5824-4df3-b7d6-8f8c6c6b8754 6990ebd55d447761a473f935f0d0eda7 { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02922.RNA-Seq.transcriptome.A.hg38 C3N-02922 LUAD RNA-Seq tissue_normal CPT0216490009 d7a679a5-1500-4bd1-aa63-57fb6d6b956f.rna_seq.transcriptome.gdc_realn.bam 7431632511 BAM transcriptome harmonized CPTAC3 685a9b5a-0174-4cb7-bde4-804781c98c16 f369ba3292e55856c1ccd9ed4889de5d { 'aliquot_tag': 'ALQ_7616da2c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02922.RNA-Seq.transcriptome.T.hg38 C3N-02922 LUAD RNA-Seq tumor CPT0216480009 5e93cf13-36d0-472c-8819-9b8cd31058d5.rna_seq.transcriptome.gdc_realn.bam 10040943742 BAM transcriptome harmonized CPTAC3 0c71dd9d-18a6-4a38-90d5-1c08476806c2 f5c6edb17fa3791830fc0ffb582c01b6 { 'aliquot_tag': 'ALQ_4b76f39c', 'gdc_sample_type': 'Primary Tumor' } C3N-02922.WGS.N C3N-02922 LUAD WGS blood_normal CPT0216570002 CPT0216570002.WholeGenome.RP-1303.bam 57795022503 BAM aligned CPTAC3 0020ffb6-4666-4f9b-b29c-6163048ce2cf 48fe087ae640701cf9bd54cefb7efa11 { 'aliquot_tag': 'ALQ_95a86e60', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02922.WGS.N.hg38 C3N-02922 LUAD WGS blood_normal CPT0216570002 a7a79960-bf5a-40c2-84d3-d35f0ce571fc_wgs_gdc_realn.bam 83399335233 BAM harmonized CPTAC3 2ad679a0-4b26-4a3e-a8a6-fc4a4f031838 ea2ae9f3ddbfb335b14eba39639ffa35 { 'aliquot_tag': 'ALQ_95a86e60', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02922.WGS.T C3N-02922 LUAD WGS tumor CPT0216480006 CPT0216480006.WholeGenome.RP-1303.bam 75494729026 BAM aligned CPTAC3 72b7e617-4ca1-4704-8e0d-49f224421f3e f76b8feb24f05ca900109a0e3f7fcdbf { 'aliquot_tag': 'ALQ_dbc9ee0d', 'gdc_sample_type': 'Primary Tumor' } @@ -33237,16 +35464,16 @@ C3N-02923.miRNA-Seq.A C3N-02923 LUAD miRNA-Seq tissue_normal CPT0216670009 19013 C3N-02923.miRNA-Seq.A.hg38 C3N-02923 LUAD miRNA-Seq tissue_normal CPT0216670009 238ba219-8364-4a63-b75b-ae6f09726a8f_mirnaseq_gdc_realn.bam 250069863 BAM harmonized CPTAC3 c6352f30-e6ce-4c10-be2b-5cacd2d751cc 90ffed9210f39abcdc312057f05b5ff8 { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02923.miRNA-Seq.T C3N-02923 LUAD miRNA-Seq tumor CPT0216660006 190130_UNC31-K00269_0188_BH2FGCBBXY_CACTCA_S23_L007_R1_001.unaln.bam 234983930 BAM unaligned CPTAC3 8e92c06f-f45c-4d67-b924-b9849736ab97 4c60abe544b9e188b01defecd08f8ba5 { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor' } C3N-02923.miRNA-Seq.T.hg38 C3N-02923 LUAD miRNA-Seq tumor CPT0216660006 019f6b45-71cf-42f8-afa8-f59b6752ee3d_mirnaseq_gdc_realn.bam 257172558 BAM harmonized CPTAC3 04fbfc0b-3faa-43bb-9456-7551de3abed8 46a3156fb8249d31f7238e8bea9e427c { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor' } -C3N-02923.RNA-Seq.chimeric.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 13d97413-3e27-4ffa-aa30-fab10819e1dc.rna_seq.chimeric.gdc_realn.bam 44362531 BAM chimeric harmonized CPTAC3 7ba9ed07-2eb4-4e0a-a0df-b3b61c44c9d3 e2be8217c7eb96e6b49b8cbc33f52e6d { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02923.RNA-Seq.chimeric.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 f85da1dc-cf0e-4428-bdd8-5d0281425b74.rna_seq.chimeric.gdc_realn.bam 47477340 BAM chimeric harmonized CPTAC3 bd0ee8b7-c7f1-4207-a5a4-72372393063b 70f4bdd0d6863393c87124b53098d78d { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor' } -C3N-02923.RNA-Seq.genomic.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 13d97413-3e27-4ffa-aa30-fab10819e1dc.rna_seq.genomic.gdc_realn.bam 8871467842 BAM genomic harmonized CPTAC3 2b1a0281-a893-4779-a6e6-0bcfcd44b4b0 a1a79381f63168c06819093d67cdfd20 { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02923.RNA-Seq.genomic.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 f85da1dc-cf0e-4428-bdd8-5d0281425b74.rna_seq.genomic.gdc_realn.bam 9542172105 BAM genomic harmonized CPTAC3 76356156-f1f5-4556-a33d-023409737992 67c2270d0ae6c6f9cb7e3d34264e8284 { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor' } -C3N-02923.RNA-Seq.R1_L001.T C3N-02923 LUAD RNA-Seq tumor CPT0216660006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L001_R1_001.fastq.gz 4329208839 FASTQ R1_L001 unaligned CPTAC3 970f6e9d-47b6-4953-88ba-56d087050694 8dcd754eb9a94be25419e858fedf63db { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor' } -C3N-02923.RNA-Seq.R1_L006.A C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L006_R1_001.fastq.gz 4054472385 FASTQ R1_L006 unaligned CPTAC3 d3c73b0a-b8cc-4953-8d69-44c28d72a258 9fa002f68dc07ce2bee32b01b4fd0db2 { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02923.RNA-Seq.R2_L001.T C3N-02923 LUAD RNA-Seq tumor CPT0216660006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L001_R2_001.fastq.gz 4755262381 FASTQ R2_L001 unaligned CPTAC3 cc2b7783-aedf-4491-a579-b5f92ef1a4cb df95542ffe93f7bf6164d80eb290b562 { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor' } -C3N-02923.RNA-Seq.R2_L006.A C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L006_R2_001.fastq.gz 4412620722 FASTQ R2_L006 unaligned CPTAC3 33e35314-ef71-47ec-b22a-4e6c450b5213 1e596d8907cbb45fa68bf378ee120943 { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02923.RNA-Seq.transcriptome.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 13d97413-3e27-4ffa-aa30-fab10819e1dc.rna_seq.transcriptome.gdc_realn.bam 9077441333 BAM transcriptome harmonized CPTAC3 0f58e1e7-79f0-4909-9492-9cbc3c182e41 67cdae33955b32f4f83944e967db9dac { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02923.RNA-Seq.transcriptome.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 f85da1dc-cf0e-4428-bdd8-5d0281425b74.rna_seq.transcriptome.gdc_realn.bam 10426102510 BAM transcriptome harmonized CPTAC3 c32f0943-1323-4fa9-87b3-d29dd787cece e77f305ebc0f7495cd43b63da9940959 { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor' } +C3N-02923.RNA-Seq.chimeric.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 5a3f829d-26d2-44f6-98cd-1598a6d0b17c.rna_seq.chimeric.gdc_realn.bam 44344926 BAM chimeric harmonized CPTAC3 ac0239a5-6b13-4724-a4cd-14a5424e2222 59ee6f1591456333ba8cf55f440e95af { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02923.RNA-Seq.chimeric.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 39d86c5d-d407-4893-bdf5-1b984045e0f5.rna_seq.chimeric.gdc_realn.bam 47485573 BAM chimeric harmonized CPTAC3 97645f67-4266-44ed-835d-27aa97a78cc7 100536857c450ea3bbe6342c21f66407 { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor' } +C3N-02923.RNA-Seq.genomic.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 5a3f829d-26d2-44f6-98cd-1598a6d0b17c.rna_seq.genomic.gdc_realn.bam 8872903730 BAM genomic harmonized CPTAC3 366c7d45-4466-4a67-b770-eb9c1dc48e5f ca5a19af6751d410ffb1aa6a026874ea { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02923.RNA-Seq.genomic.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 39d86c5d-d407-4893-bdf5-1b984045e0f5.rna_seq.genomic.gdc_realn.bam 9544341301 BAM genomic harmonized CPTAC3 928e8c92-4317-4925-b398-ddec6921a0da 6b5b66b46f15ad930cb5bab050ae6a9c { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor' } +C3N-02923.RNA-Seq.R1_L001.T C3N-02923 LUAD RNA-Seq tumor CPT0216660006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L001_R1_001.fastq.gz 4329208839 FASTQ R1_L001 unaligned CPTAC3 970f6e9d-47b6-4953-88ba-56d087050694 8dcd754eb9a94be25419e858fedf63db { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02923.RNA-Seq.R1_L006.A C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L006_R1_001.fastq.gz 4054472385 FASTQ R1_L006 unaligned CPTAC3 d3c73b0a-b8cc-4953-8d69-44c28d72a258 9fa002f68dc07ce2bee32b01b4fd0db2 { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-02923.RNA-Seq.R2_L001.T C3N-02923 LUAD RNA-Seq tumor CPT0216660006 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTTGA_S1_L001_R2_001.fastq.gz 4755262381 FASTQ R2_L001 unaligned CPTAC3 cc2b7783-aedf-4491-a579-b5f92ef1a4cb df95542ffe93f7bf6164d80eb290b562 { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02923.RNA-Seq.R2_L006.A C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L006_R2_001.fastq.gz 4412620722 FASTQ R2_L006 unaligned CPTAC3 33e35314-ef71-47ec-b22a-4e6c450b5213 1e596d8907cbb45fa68bf378ee120943 { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-02923.RNA-Seq.transcriptome.A.hg38 C3N-02923 LUAD RNA-Seq tissue_normal CPT0216670009 5a3f829d-26d2-44f6-98cd-1598a6d0b17c.rna_seq.transcriptome.gdc_realn.bam 10271320773 BAM transcriptome harmonized CPTAC3 a0b73264-e4bf-4630-a032-9523f1f782d3 5ac5da6a23a72cd979ae3f2e8d79097b { 'aliquot_tag': 'ALQ_84eec546', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02923.RNA-Seq.transcriptome.T.hg38 C3N-02923 LUAD RNA-Seq tumor CPT0216660006 39d86c5d-d407-4893-bdf5-1b984045e0f5.rna_seq.transcriptome.gdc_realn.bam 11740294404 BAM transcriptome harmonized CPTAC3 f0094369-78df-4097-beaf-1559a06e14c9 ecfb001453e619822b9bda4f0c0a7ecc { 'aliquot_tag': 'ALQ_2931f167', 'gdc_sample_type': 'Primary Tumor' } C3N-02923.WGS.N C3N-02923 LUAD WGS blood_normal CPT0216750002 CPT0216750002.WholeGenome.RP-1303.bam 50849014542 BAM aligned CPTAC3 8dafcd88-c395-43ac-bb37-18c5f12cb212 4622bb217417e52446c64add3542fed2 { 'aliquot_tag': 'ALQ_a2a09c0b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02923.WGS.N.hg38 C3N-02923 LUAD WGS blood_normal CPT0216750002 6e9385a2-99c3-4a0a-9d84-90e7a061ab4a_wgs_gdc_realn.bam 74390063218 BAM harmonized CPTAC3 91445358-8eee-4738-9441-64bdebd62c6d 8a898c97bab2137af731354942c4b0ee { 'aliquot_tag': 'ALQ_a2a09c0b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02923.WGS.T C3N-02923 LUAD WGS tumor CPT0216660009 CPT0216660009.WholeGenome.RP-1303.bam 52440615953 BAM aligned CPTAC3 8162b5da-59bf-4fd4-9009-0e81eb36e341 989e7d9e1454f9e6ed5ce89e55d5d7b0 { 'aliquot_tag': 'ALQ_b98eecf6', 'gdc_sample_type': 'Primary Tumor' } @@ -33269,10 +35496,10 @@ C3N-02925.RNA-Seq.chimeric.A.hg38 C3N-02925 HNSCC RNA-Seq tissue_normal CPT01845 C3N-02925.RNA-Seq.chimeric.T.hg38 C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 0fc3b37c-1ed7-430b-86e5-afd1904c9072.rna_seq.chimeric.gdc_realn.bam 110574015 BAM chimeric harmonized CPTAC3 d125dbc9-693c-401e-9ac5-30518915988f 589754d529600504e85fbd5c2fe82219 { 'aliquot_tag': 'ALQ_46a727ef', 'gdc_sample_type': 'Primary Tumor' } C3N-02925.RNA-Seq.genomic.A.hg38 C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 7460c7a2-89f9-4c1a-ade3-cd7e092fc034.rna_seq.genomic.gdc_realn.bam 5965734235 BAM genomic harmonized CPTAC3 cd9f73fa-d5db-4481-9068-723b83efa28e f09d8025a54a2b9883cf9a8f6c766241 { 'aliquot_tag': 'ALQ_c9e7d24f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02925.RNA-Seq.genomic.T.hg38 C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 0fc3b37c-1ed7-430b-86e5-afd1904c9072.rna_seq.genomic.gdc_realn.bam 10790885733 BAM genomic harmonized CPTAC3 f6a4a2c0-ec7e-41f7-81e2-bf078b62e06b 53fa69df79cf600c2ccd85f670bdde34 { 'aliquot_tag': 'ALQ_46a727ef', 'gdc_sample_type': 'Primary Tumor' } -C3N-02925.RNA-Seq.R1_L004.T C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L004_R1_001.fastq.gz 4902909161 FASTQ R1_L004 unaligned CPTAC3 6e684ad0-928d-4101-ba28-8e18341d9695 114dd188e3a8c340f70051b045743726 { 'aliquot_tag': 'ALQ_46a727ef', 'gdc_sample_type': 'Primary Tumor' } -C3N-02925.RNA-Seq.R1_L008.A C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L008_R1_001.fastq.gz 2986432905 FASTQ R1_L008 unaligned CPTAC3 915028f8-7517-4923-8996-fff79f9784eb 36e801a34365f051dc59f137e3516471 { 'aliquot_tag': 'ALQ_c9e7d24f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02925.RNA-Seq.R2_L004.T C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L004_R2_001.fastq.gz 5455863898 FASTQ R2_L004 unaligned CPTAC3 c9ce9ba8-601f-4b60-bdc3-385c94c73b15 0559fd045a3bb14ba809285fe56d8a6a { 'aliquot_tag': 'ALQ_46a727ef', 'gdc_sample_type': 'Primary Tumor' } -C3N-02925.RNA-Seq.R2_L008.A C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L008_R2_001.fastq.gz 3203480807 FASTQ R2_L008 unaligned CPTAC3 a8c2e00a-5ec4-4508-bc41-f40225e52b81 7cd2cb4e1f60ae98464073b0a33eff71 { 'aliquot_tag': 'ALQ_c9e7d24f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02925.RNA-Seq.R1_L004.T C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L004_R1_001.fastq.gz 4902909161 FASTQ R1_L004 unaligned CPTAC3 6e684ad0-928d-4101-ba28-8e18341d9695 114dd188e3a8c340f70051b045743726 { 'aliquot_tag': 'ALQ_46a727ef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02925.RNA-Seq.R1_L008.A C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L008_R1_001.fastq.gz 2986432905 FASTQ R1_L008 unaligned CPTAC3 915028f8-7517-4923-8996-fff79f9784eb 36e801a34365f051dc59f137e3516471 { 'aliquot_tag': 'ALQ_c9e7d24f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-02925.RNA-Seq.R2_L004.T C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 190405_UNC32-K00270_0161_BH55FNBBXY_GTGGCC_S21_L004_R2_001.fastq.gz 5455863898 FASTQ R2_L004 unaligned CPTAC3 c9ce9ba8-601f-4b60-bdc3-385c94c73b15 0559fd045a3bb14ba809285fe56d8a6a { 'aliquot_tag': 'ALQ_46a727ef', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02925.RNA-Seq.R2_L008.A C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L008_R2_001.fastq.gz 3203480807 FASTQ R2_L008 unaligned CPTAC3 a8c2e00a-5ec4-4508-bc41-f40225e52b81 7cd2cb4e1f60ae98464073b0a33eff71 { 'aliquot_tag': 'ALQ_c9e7d24f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-02925.RNA-Seq.transcriptome.A.hg38 C3N-02925 HNSCC RNA-Seq tissue_normal CPT0184550009 7460c7a2-89f9-4c1a-ade3-cd7e092fc034.rna_seq.transcriptome.gdc_realn.bam 10679455563 BAM transcriptome harmonized CPTAC3 0f9b8d8c-13bf-4b9f-adbf-35a22bada350 7eb2bce67957dc4f293d4fea3c3be595 { 'aliquot_tag': 'ALQ_c9e7d24f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02925.RNA-Seq.transcriptome.T.hg38 C3N-02925 HNSCC RNA-Seq tumor CPT0184530009 0fc3b37c-1ed7-430b-86e5-afd1904c9072.rna_seq.transcriptome.gdc_realn.bam 13892365361 BAM transcriptome harmonized CPTAC3 594e6044-e079-479a-9b29-ba8393d2dca8 933d32e55d51e5cbff8af0cb8bfed69c { 'aliquot_tag': 'ALQ_46a727ef', 'gdc_sample_type': 'Primary Tumor' } C3N-02925.WGS.N C3N-02925 HNSCC WGS blood_normal CPT0184590002 CPT0184590002.WholeGenome.RP-1303.bam 98581209706 BAM aligned CPTAC3 bdebee52-610e-4b84-b43d-90e1e28b00f0 abaa813966349f02a56b5ea55afcc8ca { 'aliquot_tag': 'ALQ_9bc5e6c6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33293,16 +35520,16 @@ C3N-02926.miRNA-Seq.A C3N-02926 LUAD miRNA-Seq tissue_normal CPT0184620009 19013 C3N-02926.miRNA-Seq.A.hg38 C3N-02926 LUAD miRNA-Seq tissue_normal CPT0184620009 51ef2de5-c6ae-4554-915b-840dc7897208_mirnaseq_gdc_realn.bam 283841836 BAM harmonized CPTAC3 3395a05c-8a39-4772-84d9-a817ef8177f2 947fcc3c43f2db34d11c275f43b318ed { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02926.miRNA-Seq.T C3N-02926 LUAD miRNA-Seq tumor CPT0184600010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTAGCT_S38_L007_R1_001.unaln.bam 264232189 BAM unaligned CPTAC3 e95f8467-9e60-4631-bac0-14c379ac827e 6b6d98b8fc65f1e1c465b5b3ee90059e { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor' } C3N-02926.miRNA-Seq.T.hg38 C3N-02926 LUAD miRNA-Seq tumor CPT0184600010 4cc9550c-bc6b-4f1a-a27a-476305c0cf16_mirnaseq_gdc_realn.bam 285978270 BAM harmonized CPTAC3 642f241b-b45d-46af-b8f7-fed3f7c96936 7f8d2d538593aedabb994a1b85901863 { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor' } -C3N-02926.RNA-Seq.chimeric.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 d14a8905-c61d-4c2a-800f-bc216ba858b5.rna_seq.chimeric.gdc_realn.bam 536958284 BAM chimeric harmonized CPTAC3 e98a4760-998a-43dc-90c9-2931fa3940be 9baf28139860afdb277bd440a3fb1aa2 { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02926.RNA-Seq.chimeric.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 3f758a6c-4844-4066-9350-c36b8aa1437b.rna_seq.chimeric.gdc_realn.bam 49209457 BAM chimeric harmonized CPTAC3 df9b8492-13ca-4995-a24a-0e223c50be2f 1894c3f88489f6149a1c0ed177eb3319 { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor' } -C3N-02926.RNA-Seq.genomic.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 d14a8905-c61d-4c2a-800f-bc216ba858b5.rna_seq.genomic.gdc_realn.bam 10419365037 BAM genomic harmonized CPTAC3 d9d7d06d-3e4d-4b5e-ba98-9b15bc8e9ffb 698373375cc24f7f6768c8980f31ce15 { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02926.RNA-Seq.genomic.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 3f758a6c-4844-4066-9350-c36b8aa1437b.rna_seq.genomic.gdc_realn.bam 9004508889 BAM genomic harmonized CPTAC3 817e1c6e-cc07-4399-99fd-b4bf605fc95b 3e1f6ec7365978ba07b2e5248acdb3e9 { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor' } -C3N-02926.RNA-Seq.R1_L003.T C3N-02926 LUAD RNA-Seq tumor CPT0184600010 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTTCC_S9_L003_R1_001.fastq.gz 4227498254 FASTQ R1_L003 unaligned CPTAC3 8c735238-ff8f-4225-9037-c73c9fede880 f159a0eb7234ccd307cb74a2b1b4047c { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor' } -C3N-02926.RNA-Seq.R1_L008.A C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L008_R1_001.fastq.gz 4426188362 FASTQ R1_L008 unaligned CPTAC3 a37360b8-4dc7-47b2-b3e6-586e2c4a63a0 826ad62daad34fc3051489aed7c096e1 { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02926.RNA-Seq.R2_L003.T C3N-02926 LUAD RNA-Seq tumor CPT0184600010 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTTCC_S9_L003_R2_001.fastq.gz 4442365729 FASTQ R2_L003 unaligned CPTAC3 8ece369c-6b17-4704-aa75-e5f5414c41c7 cf7324e92d3568b8a615139d30ef747e { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor' } -C3N-02926.RNA-Seq.R2_L008.A C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L008_R2_001.fastq.gz 4947590374 FASTQ R2_L008 unaligned CPTAC3 f85992a0-482c-4586-8a0b-2fe413c5a1df 70589b5001ee66a578f4998275537578 { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02926.RNA-Seq.transcriptome.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 d14a8905-c61d-4c2a-800f-bc216ba858b5.rna_seq.transcriptome.gdc_realn.bam 9269029381 BAM transcriptome harmonized CPTAC3 3b9c091b-9d23-4e3e-93e9-85207553a6aa 41cd705a9eed1ff08f2a7c410cd92e0e { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02926.RNA-Seq.transcriptome.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 3f758a6c-4844-4066-9350-c36b8aa1437b.rna_seq.transcriptome.gdc_realn.bam 8410995219 BAM transcriptome harmonized CPTAC3 c5971019-9ca6-4a82-94d1-d31573a7ff78 9ce11623c3ea9251c1ba39a228a68d5b { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor' } +C3N-02926.RNA-Seq.chimeric.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 f6262326-7c24-4996-ba9e-5659fd91bfac.rna_seq.chimeric.gdc_realn.bam 536912820 BAM chimeric harmonized CPTAC3 cc88caa6-414d-4b5f-a667-7b8470625ee6 3ca618f049da632d56b257cdc33f9cc1 { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02926.RNA-Seq.chimeric.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 f2400ca6-e481-4678-bff4-23609464bfad.rna_seq.chimeric.gdc_realn.bam 49205626 BAM chimeric harmonized CPTAC3 25231ce7-79ef-4bbb-a307-b260afa8c6c4 5f6a0dd8055476c589d433fedc50da56 { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor' } +C3N-02926.RNA-Seq.genomic.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 f6262326-7c24-4996-ba9e-5659fd91bfac.rna_seq.genomic.gdc_realn.bam 10420755733 BAM genomic harmonized CPTAC3 a2089caf-485f-4bb0-bbd6-2b84fb084b5f b41e442fbef04b63d42d847c2a89be8b { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02926.RNA-Seq.genomic.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 f2400ca6-e481-4678-bff4-23609464bfad.rna_seq.genomic.gdc_realn.bam 9005692680 BAM genomic harmonized CPTAC3 bb035ffe-da7d-400f-a5d5-2ecb3d16908b c7e3277e46a994d08f08ade846b37dce { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor' } +C3N-02926.RNA-Seq.R1_L003.T C3N-02926 LUAD RNA-Seq tumor CPT0184600010 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTTCC_S9_L003_R1_001.fastq.gz 4227498254 FASTQ R1_L003 unaligned CPTAC3 8c735238-ff8f-4225-9037-c73c9fede880 f159a0eb7234ccd307cb74a2b1b4047c { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02926.RNA-Seq.R1_L008.A C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L008_R1_001.fastq.gz 4426188362 FASTQ R1_L008 unaligned CPTAC3 a37360b8-4dc7-47b2-b3e6-586e2c4a63a0 826ad62daad34fc3051489aed7c096e1 { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-02926.RNA-Seq.R2_L003.T C3N-02926 LUAD RNA-Seq tumor CPT0184600010 190131_UNC32-K00270_0142_BH3LFYBBXY_AGTTCC_S9_L003_R2_001.fastq.gz 4442365729 FASTQ R2_L003 unaligned CPTAC3 8ece369c-6b17-4704-aa75-e5f5414c41c7 cf7324e92d3568b8a615139d30ef747e { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02926.RNA-Seq.R2_L008.A C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 190131_UNC32-K00270_0142_BH3LFYBBXY_CAGATC_S15_L008_R2_001.fastq.gz 4947590374 FASTQ R2_L008 unaligned CPTAC3 f85992a0-482c-4586-8a0b-2fe413c5a1df 70589b5001ee66a578f4998275537578 { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-02926.RNA-Seq.transcriptome.A.hg38 C3N-02926 LUAD RNA-Seq tissue_normal CPT0184620009 f6262326-7c24-4996-ba9e-5659fd91bfac.rna_seq.transcriptome.gdc_realn.bam 10433877480 BAM transcriptome harmonized CPTAC3 534fcbf3-03af-4add-a16e-97b7d92c0986 b6bee7f2a287357f5bf0cb625c85f6a0 { 'aliquot_tag': 'ALQ_fd537cf1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02926.RNA-Seq.transcriptome.T.hg38 C3N-02926 LUAD RNA-Seq tumor CPT0184600010 f2400ca6-e481-4678-bff4-23609464bfad.rna_seq.transcriptome.gdc_realn.bam 9517594701 BAM transcriptome harmonized CPTAC3 e254d609-160d-4f1e-be0d-e3ec4c756852 4043211c51bda874c08c19d8c54db298 { 'aliquot_tag': 'ALQ_e754a674', 'gdc_sample_type': 'Primary Tumor' } C3N-02926.WGS.N C3N-02926 LUAD WGS blood_normal CPT0184660002 CPT0184660002.WholeGenome.RP-1303.bam 130000214473 BAM aligned CPTAC3 dcde9761-e0c0-4237-bf90-601a8108d48b 50c410337fe25d5ac9c11fad6ac62f6f { 'aliquot_tag': 'ALQ_9f0103b9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02926.WGS.N.hg38 C3N-02926 LUAD WGS blood_normal CPT0184660002 93551a24-2ecf-45ff-ae4f-f3f79cc7c601_wgs_gdc_realn.bam 188891330736 BAM harmonized CPTAC3 24e2373f-2af0-41a1-a22a-861910f265b6 b77ae51dc9d6f3821c6d38c5ac1495ba { 'aliquot_tag': 'ALQ_9f0103b9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02926.WGS.T C3N-02926 LUAD WGS tumor CPT0184600007 CPT0184600007.WholeGenome.RP-1303.bam 125404030083 BAM aligned CPTAC3 55af6119-01d9-45c2-aa58-a60e0c473eb9 1cba7df019aee52440de1e651f4b3ef4 { 'aliquot_tag': 'ALQ_602b0296', 'gdc_sample_type': 'Primary Tumor' } @@ -33321,16 +35548,16 @@ C3N-02928.miRNA-Seq.A C3N-02928 LUAD miRNA-Seq tissue_normal CPT0184690009 19071 C3N-02928.miRNA-Seq.A.hg38 C3N-02928 LUAD miRNA-Seq tissue_normal CPT0184690009 31f05814-cb07-409a-bfe7-6d15b3cf470d_mirnaseq_gdc_realn.bam 301798891 BAM harmonized CPTAC3 f2caff1f-f3dd-432e-a5e8-627adb5a60b6 56b4f660b0fd91e3f13bfb7eb37fa0ff { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02928.miRNA-Seq.T C3N-02928 LUAD miRNA-Seq tumor CPT0184670010 190722_UNC31-K00269_0234_AH7VGTBBXY_CGTACG_S18_L005_R1_001.unaln.bam 202775023 BAM unaligned CPTAC3 8e039d9a-5a77-4ad8-86e9-31482ae46eb8 da6e500dd4953e26f2c9484f08121790 { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor' } C3N-02928.miRNA-Seq.T.hg38 C3N-02928 LUAD miRNA-Seq tumor CPT0184670010 7c6b4cdb-ee4d-49e1-a071-7159b46216a0_mirnaseq_gdc_realn.bam 225892193 BAM harmonized CPTAC3 cd042563-635d-42f3-8620-ea6c7633570c 09fedf45f038a7ea8ea89ee091a94323 { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor' } -C3N-02928.RNA-Seq.chimeric.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d5a12dda-f75c-4d46-8d68-f6ff0fb422d0.rna_seq.chimeric.gdc_realn.bam 73523328 BAM chimeric harmonized CPTAC3 fad3b44f-a08b-4cdc-89f3-acd4a73e2be6 d65acb67555c9defcb1f34d3a56b4f56 { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02928.RNA-Seq.chimeric.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 02c647d1-1cb7-4c8f-8d15-9de81fa3f5ef.rna_seq.chimeric.gdc_realn.bam 25759271 BAM chimeric harmonized CPTAC3 b0a1670c-02f1-4af2-b06f-b3a7cf430460 d294446767d4fae1b2289a29288eaba0 { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor' } -C3N-02928.RNA-Seq.genomic.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d5a12dda-f75c-4d46-8d68-f6ff0fb422d0.rna_seq.genomic.gdc_realn.bam 9083672308 BAM genomic harmonized CPTAC3 d6f4e067-5289-412a-afcb-5d050e6176b8 bdfa8d32558258b348e327e87d3ee2ad { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02928.RNA-Seq.genomic.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 02c647d1-1cb7-4c8f-8d15-9de81fa3f5ef.rna_seq.genomic.gdc_realn.bam 10644322007 BAM genomic harmonized CPTAC3 64f63020-3f78-4fd0-ad58-86f831149063 f6fe31069d9d783b19d5c054fc4e5e12 { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor' } -C3N-02928.RNA-Seq.R1_L001.T C3N-02928 LUAD RNA-Seq tumor CPT0184670010 190607_UNC32-K00270_0179_BH75W2BBXY_AACGTTCC-GGAGTACT_S2_L001_R1_001.fastq.gz 3232064640 FASTQ R1_L001 unaligned CPTAC3 4c972fd4-0696-4fd5-869c-7beb89674856 031e46f27ac173193e1e0e7961bb2e7f { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor' } -C3N-02928.RNA-Seq.R1_L002.A C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 190702_UNC32-K00270_0187_AH7FK2BBXY_GACCTGAA-TTGGTGAG_S5_L002_R1_001.fastq.gz 3911326573 FASTQ R1_L002 unaligned CPTAC3 9b92e501-dbc4-4f09-b7eb-e9b752a60ecd c4ea496cea7d05e18f13aa0014b18c27 { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02928.RNA-Seq.R2_L001.T C3N-02928 LUAD RNA-Seq tumor CPT0184670010 190607_UNC32-K00270_0179_BH75W2BBXY_AACGTTCC-GGAGTACT_S2_L001_R2_001.fastq.gz 3685834698 FASTQ R2_L001 unaligned CPTAC3 a3f15a80-ecce-40d1-bbd4-5f1d2d7efbde 876b292ba3528b482e2a2ca12665d342 { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor' } -C3N-02928.RNA-Seq.R2_L002.A C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 190702_UNC32-K00270_0187_AH7FK2BBXY_GACCTGAA-TTGGTGAG_S5_L002_R2_001.fastq.gz 4217991316 FASTQ R2_L002 unaligned CPTAC3 8182cae1-45d1-42d4-92b8-523b666bb444 667fb9252babf1dc83a9e401d39b04ca { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02928.RNA-Seq.transcriptome.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d5a12dda-f75c-4d46-8d68-f6ff0fb422d0.rna_seq.transcriptome.gdc_realn.bam 7977573766 BAM transcriptome harmonized CPTAC3 20513318-c926-4b85-bc47-349317c50f9f 39377bea5d9e0b5d11e01b6ed8cb3e39 { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02928.RNA-Seq.transcriptome.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 02c647d1-1cb7-4c8f-8d15-9de81fa3f5ef.rna_seq.transcriptome.gdc_realn.bam 6934677731 BAM transcriptome harmonized CPTAC3 91075a36-628f-4812-9307-f8390f228bd4 2398d9bc8acf482ca516f786bad3f86d { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor' } +C3N-02928.RNA-Seq.chimeric.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d64ef1a2-125c-49a8-a490-07c37701bd95.rna_seq.chimeric.gdc_realn.bam 73507639 BAM chimeric harmonized CPTAC3 01803aa6-d2af-468c-b83f-e982e7f6b1f2 9403240607f1b75030d33e58f9de01cc { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02928.RNA-Seq.chimeric.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 da372d3b-b94e-41b4-97cd-be802b11ad7c.rna_seq.chimeric.gdc_realn.bam 25758965 BAM chimeric harmonized CPTAC3 ea4b99d6-a134-48b4-8974-d2780151acc2 838b9675edad59d45c90dd03ecd12328 { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor' } +C3N-02928.RNA-Seq.genomic.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d64ef1a2-125c-49a8-a490-07c37701bd95.rna_seq.genomic.gdc_realn.bam 9084520765 BAM genomic harmonized CPTAC3 0bad852e-afb0-4325-bd1d-8195ee856e14 65c9ca0dafd4a39f63f3f43fc668b37e { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02928.RNA-Seq.genomic.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 da372d3b-b94e-41b4-97cd-be802b11ad7c.rna_seq.genomic.gdc_realn.bam 10645104083 BAM genomic harmonized CPTAC3 eef71d19-ab5c-44af-bec5-57284de2fa29 47da89a07609d21939ba7d055c82d8c7 { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor' } +C3N-02928.RNA-Seq.R1_L001.T C3N-02928 LUAD RNA-Seq tumor CPT0184670010 190607_UNC32-K00270_0179_BH75W2BBXY_AACGTTCC-GGAGTACT_S2_L001_R1_001.fastq.gz 3232064640 FASTQ R1_L001 unaligned CPTAC3 4c972fd4-0696-4fd5-869c-7beb89674856 031e46f27ac173193e1e0e7961bb2e7f { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02928.RNA-Seq.R1_L002.A C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 190702_UNC32-K00270_0187_AH7FK2BBXY_GACCTGAA-TTGGTGAG_S5_L002_R1_001.fastq.gz 3911326573 FASTQ R1_L002 unaligned CPTAC3 9b92e501-dbc4-4f09-b7eb-e9b752a60ecd c4ea496cea7d05e18f13aa0014b18c27 { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02928.RNA-Seq.R2_L001.T C3N-02928 LUAD RNA-Seq tumor CPT0184670010 190607_UNC32-K00270_0179_BH75W2BBXY_AACGTTCC-GGAGTACT_S2_L001_R2_001.fastq.gz 3685834698 FASTQ R2_L001 unaligned CPTAC3 a3f15a80-ecce-40d1-bbd4-5f1d2d7efbde 876b292ba3528b482e2a2ca12665d342 { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02928.RNA-Seq.R2_L002.A C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 190702_UNC32-K00270_0187_AH7FK2BBXY_GACCTGAA-TTGGTGAG_S5_L002_R2_001.fastq.gz 4217991316 FASTQ R2_L002 unaligned CPTAC3 8182cae1-45d1-42d4-92b8-523b666bb444 667fb9252babf1dc83a9e401d39b04ca { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02928.RNA-Seq.transcriptome.A.hg38 C3N-02928 LUAD RNA-Seq tissue_normal CPT0184690009 d64ef1a2-125c-49a8-a490-07c37701bd95.rna_seq.transcriptome.gdc_realn.bam 9045226050 BAM transcriptome harmonized CPTAC3 f8ae91e0-fcdd-4b42-94f3-211d5dd0587e 705907426b70ba8c3122cc3abdea3299 { 'aliquot_tag': 'ALQ_8a834de0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02928.RNA-Seq.transcriptome.T.hg38 C3N-02928 LUAD RNA-Seq tumor CPT0184670010 da372d3b-b94e-41b4-97cd-be802b11ad7c.rna_seq.transcriptome.gdc_realn.bam 7788787204 BAM transcriptome harmonized CPTAC3 ba1a3a9f-6490-4dd3-839a-aae12836d5a1 9b1489e56c196208565c4dcb5e55d450 { 'aliquot_tag': 'ALQ_55747a64', 'gdc_sample_type': 'Primary Tumor' } C3N-02928.WGS.N C3N-02928 LUAD WGS blood_normal CPT0184730002 CPT0184730002.WholeGenome.RP-1303.bam 61533454482 BAM aligned CPTAC3 c80cd6f3-13a3-4f22-88dc-cd716609a2e6 c49703bf72add2c06bc6b88731b3ff6a { 'aliquot_tag': 'ALQ_9cbd5f6c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02928.WGS.N.hg38 C3N-02928 LUAD WGS blood_normal CPT0184730002 ffa07dac-34a4-4540-9bf0-02dcfb32a04b_wgs_gdc_realn.bam 89222048185 BAM harmonized CPTAC3 66686e8c-66cf-4bb7-a77e-0cafa77c4750 8b804eb2553130fe252de917f9131186 { 'aliquot_tag': 'ALQ_9cbd5f6c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02928.WGS.T C3N-02928 LUAD WGS tumor CPT0184670007 CPT0184670007.WholeGenome.RP-1303.bam 78013736050 BAM aligned CPTAC3 16aed900-5fa1-489b-b48d-e8ab97d5b3fc 4994fb1bf1ccf0c7f16d719a3d2431f5 { 'aliquot_tag': 'ALQ_d20bde86', 'gdc_sample_type': 'Primary Tumor' } @@ -33349,16 +35576,16 @@ C3N-02929.miRNA-Seq.A C3N-02929 LUAD miRNA-Seq tissue_normal CPT0184760009 19013 C3N-02929.miRNA-Seq.A.hg38 C3N-02929 LUAD miRNA-Seq tissue_normal CPT0184760009 bacff72b-35bb-4d68-ac47-cc2fd96a515a_mirnaseq_gdc_realn.bam 235714601 BAM harmonized CPTAC3 c3ff5a38-3872-4633-b380-8268f9166098 8be3bb7b901667fe3e400e61b156ef5b { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02929.miRNA-Seq.T C3N-02929 LUAD miRNA-Seq tumor CPT0184740010 190130_UNC31-K00269_0188_BH2FGCBBXY_CTCAGA_S40_L007_R1_001.unaln.bam 259525760 BAM unaligned CPTAC3 58566506-a61f-470d-a4ae-59b82793c08d 47b1437ce65d34fb1f5ec46b9f9196f7 { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor' } C3N-02929.miRNA-Seq.T.hg38 C3N-02929 LUAD miRNA-Seq tumor CPT0184740010 d42c51a3-93f8-4177-a82b-7a8421c2fad7_mirnaseq_gdc_realn.bam 283480965 BAM harmonized CPTAC3 c52bc40a-cafa-4023-9d50-01eb07f77fb8 71f7baba357df8ef1c8cef7e0de8f630 { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor' } -C3N-02929.RNA-Seq.chimeric.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 8bd151aa-37bc-4636-9dbc-bdc02fc3071d.rna_seq.chimeric.gdc_realn.bam 33876086 BAM chimeric harmonized CPTAC3 e8566bcd-05c6-47cf-9305-315ce0a7fc35 c7810fa1d0cded816e534e5ebeab114d { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02929.RNA-Seq.chimeric.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 9a1aade3-db24-4ec0-b56b-550f950ddfec.rna_seq.chimeric.gdc_realn.bam 34998374 BAM chimeric harmonized CPTAC3 1a78d612-382f-416a-9ae9-ee4453453229 10fe44286a39e9445b0b98c22b5a98cc { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor' } -C3N-02929.RNA-Seq.genomic.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 8bd151aa-37bc-4636-9dbc-bdc02fc3071d.rna_seq.genomic.gdc_realn.bam 7528552510 BAM genomic harmonized CPTAC3 2d6cfac3-3f19-45c2-9af7-db2a2c3f2698 6e2a077b5abda270aafd2d2029adc51a { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02929.RNA-Seq.genomic.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 9a1aade3-db24-4ec0-b56b-550f950ddfec.rna_seq.genomic.gdc_realn.bam 9280876699 BAM genomic harmonized CPTAC3 bff013b7-294b-47be-9086-9d4f8006f208 449aa282b2efd79a38c0d96b1911970d { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor' } -C3N-02929.RNA-Seq.R1_L002.A C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L002_R1_001.fastq.gz 3468743452 FASTQ R1_L002 unaligned CPTAC3 45754be4-970e-4c89-a322-bc9e6890a22f a295ca374813017c5b731076fb4140b4 { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02929.RNA-Seq.R1_L003.T C3N-02929 LUAD RNA-Seq tumor CPT0184740010 190131_UNC32-K00270_0142_BH3LFYBBXY_CCGTCC_S10_L003_R1_001.fastq.gz 4007957697 FASTQ R1_L003 unaligned CPTAC3 8e37dcc6-a449-4543-acbd-05487d6a7552 7c12e212795d4baddaef24f95b8555b1 { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor' } -C3N-02929.RNA-Seq.R2_L002.A C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L002_R2_001.fastq.gz 3684972977 FASTQ R2_L002 unaligned CPTAC3 d85640d9-4b91-4181-a3ee-3e35b31164da e85588d7a3689b84da381b7bb7171f5e { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02929.RNA-Seq.R2_L003.T C3N-02929 LUAD RNA-Seq tumor CPT0184740010 190131_UNC32-K00270_0142_BH3LFYBBXY_CCGTCC_S10_L003_R2_001.fastq.gz 4033348066 FASTQ R2_L003 unaligned CPTAC3 6471a9ad-53c2-440a-bd9e-4fb462b0128d 3e79712d91bd90bac5fd7447e225a1c4 { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor' } -C3N-02929.RNA-Seq.transcriptome.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 8bd151aa-37bc-4636-9dbc-bdc02fc3071d.rna_seq.transcriptome.gdc_realn.bam 7754120337 BAM transcriptome harmonized CPTAC3 0c8fa3ea-93b9-4881-8eaf-5e3145a6c655 7bd2d415f33966991aec9e0e85293347 { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02929.RNA-Seq.transcriptome.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 9a1aade3-db24-4ec0-b56b-550f950ddfec.rna_seq.transcriptome.gdc_realn.bam 7000606704 BAM transcriptome harmonized CPTAC3 e32cada4-372c-4652-9558-042b33a098b2 fc778462cff6c2510b6a59716ce88528 { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor' } +C3N-02929.RNA-Seq.chimeric.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 9fd10ad4-7f78-40c4-a9bc-ea90a959a13e.rna_seq.chimeric.gdc_realn.bam 33863903 BAM chimeric harmonized CPTAC3 6bcb8441-a6e7-4ff5-9031-05f7bb2220f5 71bc3ad59674ead0bdd5b5e117e7a156 { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02929.RNA-Seq.chimeric.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 136c7230-c0f4-48c7-a8cc-678b17dc982b.rna_seq.chimeric.gdc_realn.bam 34986018 BAM chimeric harmonized CPTAC3 84e5ced3-3897-4a85-bcfd-e803913108a7 fc6c4cf77fe9adb34e777a1978af03d7 { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor' } +C3N-02929.RNA-Seq.genomic.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 9fd10ad4-7f78-40c4-a9bc-ea90a959a13e.rna_seq.genomic.gdc_realn.bam 7529693940 BAM genomic harmonized CPTAC3 9f361ebb-d288-4553-9d89-892bd4ffa95c d33feecdf6484ac5b421d22edebf7a4a { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02929.RNA-Seq.genomic.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 136c7230-c0f4-48c7-a8cc-678b17dc982b.rna_seq.genomic.gdc_realn.bam 9282145949 BAM genomic harmonized CPTAC3 21df8a07-bf32-4c09-be3f-9ee21613d65b 23237912abc2a14c308c0a7273297bde { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor' } +C3N-02929.RNA-Seq.R1_L002.A C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L002_R1_001.fastq.gz 3468743452 FASTQ R1_L002 unaligned CPTAC3 45754be4-970e-4c89-a322-bc9e6890a22f a295ca374813017c5b731076fb4140b4 { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-02929.RNA-Seq.R1_L003.T C3N-02929 LUAD RNA-Seq tumor CPT0184740010 190131_UNC32-K00270_0142_BH3LFYBBXY_CCGTCC_S10_L003_R1_001.fastq.gz 4007957697 FASTQ R1_L003 unaligned CPTAC3 8e37dcc6-a449-4543-acbd-05487d6a7552 7c12e212795d4baddaef24f95b8555b1 { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02929.RNA-Seq.R2_L002.A C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 190123_UNC31-K00269_0183_BH3L7LBBXY_ATGTCA_S8_L002_R2_001.fastq.gz 3684972977 FASTQ R2_L002 unaligned CPTAC3 d85640d9-4b91-4181-a3ee-3e35b31164da e85588d7a3689b84da381b7bb7171f5e { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-02929.RNA-Seq.R2_L003.T C3N-02929 LUAD RNA-Seq tumor CPT0184740010 190131_UNC32-K00270_0142_BH3LFYBBXY_CCGTCC_S10_L003_R2_001.fastq.gz 4033348066 FASTQ R2_L003 unaligned CPTAC3 6471a9ad-53c2-440a-bd9e-4fb462b0128d 3e79712d91bd90bac5fd7447e225a1c4 { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-02929.RNA-Seq.transcriptome.A.hg38 C3N-02929 LUAD RNA-Seq tissue_normal CPT0184760009 9fd10ad4-7f78-40c4-a9bc-ea90a959a13e.rna_seq.transcriptome.gdc_realn.bam 8742393326 BAM transcriptome harmonized CPTAC3 05b62da0-9314-4a46-aefc-e152d62fac9c 0ee7faf8e54c6810e96ba8f815a08ed0 { 'aliquot_tag': 'ALQ_c38f0994', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02929.RNA-Seq.transcriptome.T.hg38 C3N-02929 LUAD RNA-Seq tumor CPT0184740010 136c7230-c0f4-48c7-a8cc-678b17dc982b.rna_seq.transcriptome.gdc_realn.bam 7897501868 BAM transcriptome harmonized CPTAC3 5b83f828-9e96-477f-82d3-a13ccf4e1285 eb383e3c21f97ef9459f1ce18976acdb { 'aliquot_tag': 'ALQ_d988d311', 'gdc_sample_type': 'Primary Tumor' } C3N-02929.WGS.N C3N-02929 LUAD WGS blood_normal CPT0184800002 CPT0184800002.WholeGenome.RP-1303.bam 104459068175 BAM aligned CPTAC3 5544adbe-f027-402e-b086-0081d1864c7e 31f099a48fd64d676974861ba0bad74a { 'aliquot_tag': 'ALQ_2a4b9769', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02929.WGS.N.hg38 C3N-02929 LUAD WGS blood_normal CPT0184800002 414fe559-b577-4021-988d-edf42348185d_wgs_gdc_realn.bam 151886995124 BAM harmonized CPTAC3 e1e37906-ac43-42fe-af73-58ceb9e2b10b d088fe6c41fd56d58a0fbcec9664cdc9 { 'aliquot_tag': 'ALQ_2a4b9769', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02929.WGS.T C3N-02929 LUAD WGS tumor CPT0184740007 CPT0184740007.WholeGenome.RP-1303.bam 134531338798 BAM aligned CPTAC3 686ce479-90d8-41e8-8e61-a6554954a257 1f577347d469730c3adf5a744a0ce196 { 'aliquot_tag': 'ALQ_5ef777f3', 'gdc_sample_type': 'Primary Tumor' } @@ -33369,38 +35596,50 @@ C3N-02929.WXS.N C3N-02929 LUAD WXS blood_normal CPT0184800002 CPT0184800002.Whol C3N-02929.WXS.N.hg38 C3N-02929 LUAD WXS blood_normal CPT0184800002 414fe559-b577-4021-988d-edf42348185d_wxs_gdc_realn.bam 32190584639 BAM harmonized CPTAC3 864a3d57-5ac4-4c39-9e16-6720f7985633 a3600f5f8ec2bb38fb5fe319b5279719 { 'aliquot_tag': 'ALQ_2a4b9769', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02929.WXS.T C3N-02929 LUAD WXS tumor CPT0184740007 CPT0184740007.WholeExome.RP-1303.bam 18398967738 BAM aligned CPTAC3 2a247459-970c-47fa-90a5-ae276f4f866a 51dc85176b266b75909efbc690216008 { 'aliquot_tag': 'ALQ_5ef777f3', 'gdc_sample_type': 'Primary Tumor' } C3N-02929.WXS.T.hg38 C3N-02929 LUAD WXS tumor CPT0184740007 94f45d68-628c-4d05-a253-85d4a19284e6_wxs_gdc_realn.bam 25768139029 BAM harmonized CPTAC3 39b71d68-828c-4a9c-a69e-ea091172401e e210fdd93dec879ae72190601fe05f92 { 'aliquot_tag': 'ALQ_5ef777f3', 'gdc_sample_type': 'Primary Tumor' } -C3N-02930.ANN_d565482f.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 5c4a623e-49e5-40d3-9bfd-fef7cefd62ff.rna_seq.chimeric.gdc_realn.bam 244664501 BAM chimeric harmonized CPTAC3 19f3ec7a-c048-4376-a8d3-6b6811cd1d77 64621a06dcf90563b96b19fe88680cc4 { 'aliquot_tag': 'ANN_d565482f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02930.ANN_d565482f.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 5c4a623e-49e5-40d3-9bfd-fef7cefd62ff.rna_seq.genomic.gdc_realn.bam 12917232154 BAM genomic harmonized CPTAC3 87917c12-ed61-47b9-9b1c-8a49ef331085 ee69b9d3fe8246031bf4a1e98b01eaea { 'aliquot_tag': 'ANN_d565482f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02930.ANN_d565482f.RNA-Seq.R1_L006.T C3N-02930 PDA RNA-Seq tumor CPT0184810034 200807_UNC32-K00270_0255_AHHY2WBBXY_CAATTAAC-CGAGATAT_S5_L006_R1_001.fastq.gz 5164758172 FASTQ R1_L006 unaligned CPTAC3 6d20ad09-33cb-4eb3-bd90-a089cdac81f1 f742a976cf1c846ddd3c86d992d57247 { 'aliquot_tag': 'ANN_d565482f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02930.ANN_d565482f.RNA-Seq.R2_L006.T C3N-02930 PDA RNA-Seq tumor CPT0184810034 200807_UNC32-K00270_0255_AHHY2WBBXY_CAATTAAC-CGAGATAT_S5_L006_R2_001.fastq.gz 5580827454 FASTQ R2_L006 unaligned CPTAC3 606995fe-dd65-4648-bffa-23b2b9b37677 45d5f319c2b08d68bc599a927adfbde4 { 'aliquot_tag': 'ANN_d565482f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02930.ANN_d565482f.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 5c4a623e-49e5-40d3-9bfd-fef7cefd62ff.rna_seq.transcriptome.gdc_realn.bam 12824442131 BAM transcriptome harmonized CPTAC3 ac28de93-34d3-45b1-8fb4-2180696cd1d9 06c3ac8bcafe9b85856a5fd8d48c732a { 'aliquot_tag': 'ANN_d565482f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02930.ANN_d565482f.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 15729f08-8e0d-4eda-8f42-d3d4725a49a4.rna_seq.chimeric.gdc_realn.bam 244737706 BAM chimeric harmonized CPTAC3 5964dade-522f-4403-a865-9ee8ba13bce4 f26bb25ee79852f6fa2f6f1cf7e9ebe2 { 'aliquot_tag': 'ANN_d565482f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02930.ANN_d565482f.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 15729f08-8e0d-4eda-8f42-d3d4725a49a4.rna_seq.genomic.gdc_realn.bam 12934957545 BAM genomic harmonized CPTAC3 cc56c7bd-bcfb-4feb-98ba-d70c3d649b9c f526ef70bac4f2aa605e77404ef79480 { 'aliquot_tag': 'ANN_d565482f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02930.ANN_d565482f.RNA-Seq.R1_L006.T C3N-02930 PDA RNA-Seq tumor CPT0184810034 200807_UNC32-K00270_0255_AHHY2WBBXY_CAATTAAC-CGAGATAT_S5_L006_R1_001.fastq.gz 5164758172 FASTQ R1_L006 unaligned CPTAC3 6d20ad09-33cb-4eb3-bd90-a089cdac81f1 f742a976cf1c846ddd3c86d992d57247 { 'aliquot_tag': 'ANN_d565482f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L006' } +C3N-02930.ANN_d565482f.RNA-Seq.R2_L006.T C3N-02930 PDA RNA-Seq tumor CPT0184810034 200807_UNC32-K00270_0255_AHHY2WBBXY_CAATTAAC-CGAGATAT_S5_L006_R2_001.fastq.gz 5580827454 FASTQ R2_L006 unaligned CPTAC3 606995fe-dd65-4648-bffa-23b2b9b37677 45d5f319c2b08d68bc599a927adfbde4 { 'aliquot_tag': 'ANN_d565482f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L006' } +C3N-02930.ANN_d565482f.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810034 15729f08-8e0d-4eda-8f42-d3d4725a49a4.rna_seq.transcriptome.gdc_realn.bam 13975149243 BAM transcriptome harmonized CPTAC3 722b9374-2ec6-4a42-bd68-688fea14d19f 7e61a2c52867eb91fa496a97c79660c0 { 'aliquot_tag': 'ANN_d565482f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } C3N-02930.DUP_3b6b2903.WXS.T C3N-02930 PDA WXS tumor CPT0184810036 CPT0184810036.WholeExome.RP-1303.bam 24027429743 BAM aligned CPTAC3 68d6d8e3-e2bb-45d1-b46a-4a25d0ab45e8 e30640729ebb82042399686c5c50e00c { 'aliquot_tag': 'DUP_3b6b2903', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02930.DUP_3b6b2903.WXS.T.hg38 C3N-02930 PDA WXS tumor CPT0184810036 196d2508-1e9a-4066-852b-db2b6d675026_wxs_gdc_realn.bam 33641984581 BAM harmonized CPTAC3 b2537afb-b18b-41c5-b14f-3e0328300b01 a9fd83cd22fa254f075323ef27645607 { 'aliquot_tag': 'DUP_3b6b2903', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-02930.DUP_4404b4b.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810043 9b9bbcd6-56e4-4517-b3f3-88ebf71f1c24.rna_seq.chimeric.gdc_realn.bam 406730343 BAM chimeric harmonized CPTAC3 2f09aba8-039e-4537-a1df-260b97ea0505 b1a5124bc5246757e9a5e2ae3d18155d { 'aliquot_tag': 'DUP_4404b4b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02930.DUP_4404b4b.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810043 9b9bbcd6-56e4-4517-b3f3-88ebf71f1c24.rna_seq.genomic.gdc_realn.bam 6808360565 BAM genomic harmonized CPTAC3 70c69d58-589e-4ed1-8bd4-27f23e6edb05 ac18130c0b3165cfb4af8408dd76486c { 'aliquot_tag': 'DUP_4404b4b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02930.DUP_4404b4b.RNA-Seq.R1_L005.T C3N-02930 PDA RNA-Seq tumor CPT0184810043 220114_UNC32-K00270_0310_AHMWT5BBXY_AGTTCAGG-CCAACAGA_S13_L005_R1_001.fastq.gz 3132344280 FASTQ R1_L005 unaligned CPTAC3 9ec81a17-9216-47db-8248-fbf2bc09ab44 b5a870a059ee2a0fe53f2db227ff97ba { 'aliquot_tag': 'DUP_4404b4b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3N-02930.DUP_4404b4b.RNA-Seq.R2_L005.T C3N-02930 PDA RNA-Seq tumor CPT0184810043 220114_UNC32-K00270_0310_AHMWT5BBXY_AGTTCAGG-CCAACAGA_S13_L005_R2_001.fastq.gz 3395584601 FASTQ R2_L005 unaligned CPTAC3 f1d2432f-8b7b-4595-90a9-c5f69fc1373f afd248fde572fec3a5a68108e2869f60 { 'aliquot_tag': 'DUP_4404b4b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3N-02930.DUP_4404b4b.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810043 9b9bbcd6-56e4-4517-b3f3-88ebf71f1c24.rna_seq.transcriptome.gdc_realn.bam 8711958378 BAM transcriptome harmonized CPTAC3 c94b25f2-53a2-4d54-abe3-3c3631ad730d 14b33f08dcb4382d2627c2766606dd0b { 'aliquot_tag': 'DUP_4404b4b', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02930.DUP_4c6c1995.WXS.T C3N-02930 PDA WXS tumor CPT0184810037 CPT0184810037.WholeExome.RP-1303.bam 26427797846 BAM aligned CPTAC3 534eb6f6-6d45-421a-9012-7d63e3328c9e 12914a7f98577225005ef77951d22397 { 'aliquot_tag': 'DUP_4c6c1995', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02930.DUP_4c6c1995.WXS.T.hg38 C3N-02930 PDA WXS tumor CPT0184810037 0f5cd2c3-cc7e-46aa-b49f-306ce900c2e6_wxs_gdc_realn.bam 36671323296 BAM harmonized CPTAC3 0b550ac4-314b-48d9-b6c5-529373e75244 0a6e87876cc5d226cb1bd14a0a12cd94 { 'aliquot_tag': 'DUP_4c6c1995', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-02930.DUP_742abfc4.RNA-Seq.chimeric.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810046 ba4aff6a-3378-4b8c-9a2d-5782dc8fab8a.rna_seq.chimeric.gdc_realn.bam 492229252 BAM chimeric harmonized CPTAC3 39803b8d-379a-4a4f-b37a-1553bf7521ea 120d59465175ef594056efdcf6a9bba2 { 'aliquot_tag': 'DUP_742abfc4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02930.DUP_742abfc4.RNA-Seq.genomic.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810046 ba4aff6a-3378-4b8c-9a2d-5782dc8fab8a.rna_seq.genomic.gdc_realn.bam 8791491817 BAM genomic harmonized CPTAC3 cbdde07f-2faa-46cc-a32a-d0d5f30fb598 2de6a2bdade3a2adf7626554521bf464 { 'aliquot_tag': 'DUP_742abfc4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02930.DUP_742abfc4.RNA-Seq.R1_L004.T C3N-02930 PDA RNA-Seq tumor CPT0184810046 220126_UNC32-K00270_0314_AHMVJ7BBXY_AATGCCTC-TCGATCCA_S13_L004_R1_001.fastq.gz 4111601063 FASTQ R1_L004 unaligned CPTAC3 b4128669-cb33-4f8d-ba06-bc95a0ddec89 cd736514144d6737ad71de827ea4045b { 'aliquot_tag': 'DUP_742abfc4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L004' } +C3N-02930.DUP_742abfc4.RNA-Seq.R2_L004.T C3N-02930 PDA RNA-Seq tumor CPT0184810046 220126_UNC32-K00270_0314_AHMVJ7BBXY_AATGCCTC-TCGATCCA_S13_L004_R2_001.fastq.gz 4449924393 FASTQ R2_L004 unaligned CPTAC3 1af7d724-00a6-4f53-976c-2ce4490af71b 9b97a239defcf9a4e8c783517288ebea { 'aliquot_tag': 'DUP_742abfc4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L004' } +C3N-02930.DUP_742abfc4.RNA-Seq.transcriptome.T.hg38 C3N-02930 PDA RNA-Seq tumor CPT0184810046 ba4aff6a-3378-4b8c-9a2d-5782dc8fab8a.rna_seq.transcriptome.gdc_realn.bam 9499263695 BAM transcriptome harmonized CPTAC3 e9278635-e4d7-4e6e-bb84-da357a3528cd 6aaa4e066bdc24f55523e67cf6ca8f6a { 'aliquot_tag': 'DUP_742abfc4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02930.DUP_908e7907.RNA-Seq.chimeric.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 f10b724d-ee5a-4b4f-8240-34623de3b366.rna_seq.chimeric.gdc_realn.bam 71706368 BAM chimeric harmonized CPTAC3 95b09035-52fe-4076-82cf-f36b9d365969 13b5e89e9cd073defb40fc28ed0cfab7 { 'aliquot_tag': 'DUP_908e7907', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02930.DUP_908e7907.RNA-Seq.genomic.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 f10b724d-ee5a-4b4f-8240-34623de3b366.rna_seq.genomic.gdc_realn.bam 7243600398 BAM genomic harmonized CPTAC3 820210cc-d1ef-4fc5-878e-e035062b009a dda5f1148caa912974120b4386c6d8c0 { 'aliquot_tag': 'DUP_908e7907', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02930.DUP_908e7907.RNA-Seq.R1_L003.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 220126_UNC32-K00270_0314_AHMVJ7BBXY_TACCGAGG-CCTGAACT_S12_L003_R1_001.fastq.gz 2560501420 FASTQ R1_L003 unaligned CPTAC3 8264bd80-e4a0-4a2c-8408-2bfd66488507 9095ab32e5484cda0fae03dc07de7d2c { 'aliquot_tag': 'DUP_908e7907', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L003' } +C3N-02930.DUP_908e7907.RNA-Seq.R2_L003.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 220126_UNC32-K00270_0314_AHMVJ7BBXY_TACCGAGG-CCTGAACT_S12_L003_R2_001.fastq.gz 2928252932 FASTQ R2_L003 unaligned CPTAC3 2dc602cb-63e6-4a88-9894-a25db0e1579e d82e3b8b3b38778706aacc100a5709ae { 'aliquot_tag': 'DUP_908e7907', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L003' } +C3N-02930.DUP_908e7907.RNA-Seq.transcriptome.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 f10b724d-ee5a-4b4f-8240-34623de3b366.rna_seq.transcriptome.gdc_realn.bam 6483025551 BAM transcriptome harmonized CPTAC3 e8bae17a-b03d-4d8c-a119-62e1ac9341c9 fc853eb5a64c325538c4003d87ff9252 { 'aliquot_tag': 'DUP_908e7907', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02930.DUP_986b4b79.WXS.N C3N-02930 PDA WXS blood_normal CPT0184870002 CPT0184870002.WholeExome.RP-1303.bam 28812687466 BAM aligned CPTAC3 992a9872-6083-4e55-a965-d1b155e5b40b 119dcad76c636d32f270c3ce7a1b1060 { 'aliquot_tag': 'DUP_986b4b79', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02930.DUP_986b4b79.WXS.N.hg38 C3N-02930 PDA WXS blood_normal CPT0184870002 b784e42c-5dcb-4048-a06b-19e4406b4463_wxs_gdc_realn.bam 40257197690 BAM harmonized CPTAC3 294e7e56-c709-478f-bb12-dfefa496f3a3 0ab7e7097152ca55115a0bd70fa34f4b { 'aliquot_tag': 'DUP_986b4b79', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } +C3N-02930.DUP_a6135764.RNA-Seq.chimeric.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 a23f510f-5501-4013-a089-410d366df852.rna_seq.chimeric.gdc_realn.bam 345596713 BAM chimeric harmonized CPTAC3 a556b7d5-9e13-4618-b684-89c2fed282cc b50e3fdeb47d1e6f9376c6919106369e { 'aliquot_tag': 'DUP_a6135764', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02930.DUP_a6135764.RNA-Seq.genomic.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 a23f510f-5501-4013-a089-410d366df852.rna_seq.genomic.gdc_realn.bam 10492684793 BAM genomic harmonized CPTAC3 69c6b6fd-1380-47d3-9aa7-40072afca3cf fbb95b55cb248220f02611cd714b104b { 'aliquot_tag': 'DUP_a6135764', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02930.DUP_a6135764.RNA-Seq.R1_L005.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 220114_UNC32-K00270_0310_AHMWT5BBXY_TCTCTACT-CGCGGTTC_S16_L005_R1_001.fastq.gz 4406428554 FASTQ R1_L005 unaligned CPTAC3 b9133cec-ed9e-4b9f-8d4e-d850267d26f5 57967178f8112219c79bebf8370e4d21 { 'aliquot_tag': 'DUP_a6135764', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3N-02930.DUP_a6135764.RNA-Seq.R2_L005.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 220114_UNC32-K00270_0310_AHMWT5BBXY_TCTCTACT-CGCGGTTC_S16_L005_R2_001.fastq.gz 4798004933 FASTQ R2_L005 unaligned CPTAC3 fb7abba1-1af9-4e67-b594-70d813cff2c5 7d788eed23310f940bb89b64c3ffdd68 { 'aliquot_tag': 'DUP_a6135764', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3N-02930.DUP_a6135764.RNA-Seq.transcriptome.A.hg38 C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 a23f510f-5501-4013-a089-410d366df852.rna_seq.transcriptome.gdc_realn.bam 11452239027 BAM transcriptome harmonized CPTAC3 504b3cde-fea4-458c-b74d-87523e3a2a29 7177cd6fd4084b1e31dd59fb71f5fd6a { 'aliquot_tag': 'DUP_a6135764', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02930.DUP_dcd30404.WXS.T C3N-02930 PDA WXS tumor CPT0184810038 CPT0184810038.WholeExome.RP-1303.bam 21753554456 BAM aligned CPTAC3 db71c494-050c-426e-b1f4-093bbeea206f d9098346a9e4c41a8a7a01fae36273d6 { 'aliquot_tag': 'DUP_dcd30404', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02930.DUP_dcd30404.WXS.T.hg38 C3N-02930 PDA WXS tumor CPT0184810038 00a57e9e-5c8e-47bc-a71d-d220116d32d0_wxs_gdc_realn.bam 30663764810 BAM harmonized CPTAC3 50ecb347-19a6-4724-9177-fdaa41c061a6 dac3f76e53500431556cf288aa8062ea { 'aliquot_tag': 'DUP_dcd30404', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3N-02930.RNA-Seq.R1_L003.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 220126_UNC32-K00270_0314_AHMVJ7BBXY_TACCGAGG-CCTGAACT_S12_L003_R1_001.fastq.gz 2560501420 FASTQ R1_L003 unaligned CPTAC3 8264bd80-e4a0-4a2c-8408-2bfd66488507 9095ab32e5484cda0fae03dc07de7d2c { 'aliquot_tag': 'ALQ_908e7907', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02930.RNA-Seq.R1_L004.T C3N-02930 PDA RNA-Seq tumor CPT0184810046 220126_UNC32-K00270_0314_AHMVJ7BBXY_AATGCCTC-TCGATCCA_S13_L004_R1_001.fastq.gz 4111601063 FASTQ R1_L004 unaligned CPTAC3 b4128669-cb33-4f8d-ba06-bc95a0ddec89 cd736514144d6737ad71de827ea4045b { 'aliquot_tag': 'ALQ_742abfc4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02930.RNA-Seq.R1_L005.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 220114_UNC32-K00270_0310_AHMWT5BBXY_TCTCTACT-CGCGGTTC_S16_L005_R1_001.fastq.gz 4406428554 FASTQ R1_L005 unaligned CPTAC3 b9133cec-ed9e-4b9f-8d4e-d850267d26f5 57967178f8112219c79bebf8370e4d21 { 'aliquot_tag': 'ALQ_a6135764', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02930.RNA-Seq.R1_L005.T C3N-02930 PDA RNA-Seq tumor CPT0184810043 220114_UNC32-K00270_0310_AHMWT5BBXY_AGTTCAGG-CCAACAGA_S13_L005_R1_001.fastq.gz 3132344280 FASTQ R1_L005 unaligned CPTAC3 9ec81a17-9216-47db-8248-fbf2bc09ab44 b5a870a059ee2a0fe53f2db227ff97ba { 'aliquot_tag': 'ALQ_4404b4b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02930.RNA-Seq.R2_L003.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830041 220126_UNC32-K00270_0314_AHMVJ7BBXY_TACCGAGG-CCTGAACT_S12_L003_R2_001.fastq.gz 2928252932 FASTQ R2_L003 unaligned CPTAC3 2dc602cb-63e6-4a88-9894-a25db0e1579e d82e3b8b3b38778706aacc100a5709ae { 'aliquot_tag': 'ALQ_908e7907', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02930.RNA-Seq.R2_L004.T C3N-02930 PDA RNA-Seq tumor CPT0184810046 220126_UNC32-K00270_0314_AHMVJ7BBXY_AATGCCTC-TCGATCCA_S13_L004_R2_001.fastq.gz 4449924393 FASTQ R2_L004 unaligned CPTAC3 1af7d724-00a6-4f53-976c-2ce4490af71b 9b97a239defcf9a4e8c783517288ebea { 'aliquot_tag': 'ALQ_742abfc4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02930.RNA-Seq.R2_L005.A C3N-02930 PDA RNA-Seq tissue_normal CPT0184830038 220114_UNC32-K00270_0310_AHMWT5BBXY_TCTCTACT-CGCGGTTC_S16_L005_R2_001.fastq.gz 4798004933 FASTQ R2_L005 unaligned CPTAC3 fb7abba1-1af9-4e67-b594-70d813cff2c5 7d788eed23310f940bb89b64c3ffdd68 { 'aliquot_tag': 'ALQ_a6135764', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02930.RNA-Seq.R2_L005.T C3N-02930 PDA RNA-Seq tumor CPT0184810043 220114_UNC32-K00270_0310_AHMWT5BBXY_AGTTCAGG-CCAACAGA_S13_L005_R2_001.fastq.gz 3395584601 FASTQ R2_L005 unaligned CPTAC3 f1d2432f-8b7b-4595-90a9-c5f69fc1373f afd248fde572fec3a5a68108e2869f60 { 'aliquot_tag': 'ALQ_4404b4b', 'gdc_sample_type': 'Primary Tumor' } C3N-02939.MethArray.Green.A C3N-02939 PDA Methylation Array tissue_normal CPT0208500007 203561620159_R07C01_Grn.idat 13676216 IDAT Green NA CPTAC3 ecbf50fb-5c39-43e7-9f03-49129e62f019 635f52bf7e9e3a6f2a4f7caf84863cb3 { 'aliquot_tag': 'ALQ_cb773d3c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02939.MethArray.Green.T C3N-02939 PDA Methylation Array tumor CPT0208480008 203561450008_R01C01_Grn.idat 13676236 IDAT Green NA CPTAC3 b16c21f2-afe6-4136-bf8d-19daee2e44fb 18ea732623ba16b582eaf932a8987b39 { 'aliquot_tag': 'ALQ_a0e4b8c9', 'gdc_sample_type': 'Primary Tumor' } C3N-02939.MethArray.Red.A C3N-02939 PDA Methylation Array tissue_normal CPT0208500007 203561620159_R07C01_Red.idat 13676216 IDAT Red NA CPTAC3 b997ac95-9ad1-44d2-a8fa-08339c85018a 54d80fdf69f2ae5d341651a171e5f568 { 'aliquot_tag': 'ALQ_cb773d3c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02939.MethArray.Red.T C3N-02939 PDA Methylation Array tumor CPT0208480008 203561450008_R01C01_Red.idat 13676236 IDAT Red NA CPTAC3 9fe6f13e-a2b2-4ee9-a630-51adc6429ead 1a3f2c3c2d0c3028e1f940f65377614a { 'aliquot_tag': 'ALQ_a0e4b8c9', 'gdc_sample_type': 'Primary Tumor' } C3N-02939.miRNA-Seq.T C3N-02939 PDA miRNA-Seq tumor CPT0208480011 190712_UNC32-K00270_0192_BH7HL3BBXY_CAGGCG_S9_L004_R1_001.unaln.bam 137446607 BAM unaligned CPTAC3 66779b53-72de-4036-8975-d4c1c9a27edb 4050dbc0804c913f3822d1e76e3b7c82 { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor' } C3N-02939.miRNA-Seq.T.hg38 C3N-02939 PDA miRNA-Seq tumor CPT0208480011 21cc21ff-e338-49c4-871e-60088108aad4_mirnaseq_gdc_realn.bam 156064989 BAM harmonized CPTAC3 e884c325-e6e6-4dab-9f94-ee597aac12b6 886eb96d828c8c51f7cfa6e75c1605c0 { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02939.RNA-Seq.chimeric.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 4c71025e-e2dc-4c32-b97f-24e33f09fcf0.rna_seq.chimeric.gdc_realn.bam 33484015 BAM chimeric harmonized CPTAC3 6f490410-569d-4d12-9770-d2734050e754 5f3d6593534bebf7ac78b1e3f74658de { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02939.RNA-Seq.genomic.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 4c71025e-e2dc-4c32-b97f-24e33f09fcf0.rna_seq.genomic.gdc_realn.bam 8343601462 BAM genomic harmonized CPTAC3 b2be5524-0785-48f4-a9d4-2a335e616a6d 28d7a12989bdf64310f658b7ef9efb6c { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02939.RNA-Seq.R1_L001.T C3N-02939 PDA RNA-Seq tumor CPT0208480011 190621_UNC32-K00270_0185_BH7G72BBXY_AACTGTAG-ACGCCGCA_S2_L001_R1_001.fastq.gz 3906043882 FASTQ R1_L001 unaligned CPTAC3 ffd01218-e59c-4f40-8c84-4c195fd94a62 d6c97ce6930e61dec1808d4a17c9ba44 { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02939.RNA-Seq.R2_L001.T C3N-02939 PDA RNA-Seq tumor CPT0208480011 190621_UNC32-K00270_0185_BH7G72BBXY_AACTGTAG-ACGCCGCA_S2_L001_R2_001.fastq.gz 4221871223 FASTQ R2_L001 unaligned CPTAC3 45a05eb7-ecdc-46f4-98f2-3f832344269f 9a22dd700b15427fbb7541a78ae97699 { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor' } -C3N-02939.RNA-Seq.transcriptome.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 4c71025e-e2dc-4c32-b97f-24e33f09fcf0.rna_seq.transcriptome.gdc_realn.bam 10155007411 BAM transcriptome harmonized CPTAC3 8dd408a0-705f-4617-af4a-c355849c3bb7 d3860ffd37479292a11d6a799cb2fb76 { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02939.RNA-Seq.chimeric.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 ab068e90-f23f-46f8-aa70-d18903824ecf.rna_seq.chimeric.gdc_realn.bam 33470583 BAM chimeric harmonized CPTAC3 20ae67f0-8c0a-4961-af1f-e9c62229c78e 3d815072ceb45a4d0a2cb5ac9b28cbc5 { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02939.RNA-Seq.genomic.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 ab068e90-f23f-46f8-aa70-d18903824ecf.rna_seq.genomic.gdc_realn.bam 8342862575 BAM genomic harmonized CPTAC3 ae55e835-ff8a-4e0b-b3ce-fb5c3ba0ebd8 5902984c673b1f831bcc42e413889cc2 { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor' } +C3N-02939.RNA-Seq.R1_L001.T C3N-02939 PDA RNA-Seq tumor CPT0208480011 190621_UNC32-K00270_0185_BH7G72BBXY_AACTGTAG-ACGCCGCA_S2_L001_R1_001.fastq.gz 3906043882 FASTQ R1_L001 unaligned CPTAC3 ffd01218-e59c-4f40-8c84-4c195fd94a62 d6c97ce6930e61dec1808d4a17c9ba44 { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02939.RNA-Seq.R2_L001.T C3N-02939 PDA RNA-Seq tumor CPT0208480011 190621_UNC32-K00270_0185_BH7G72BBXY_AACTGTAG-ACGCCGCA_S2_L001_R2_001.fastq.gz 4221871223 FASTQ R2_L001 unaligned CPTAC3 45a05eb7-ecdc-46f4-98f2-3f832344269f 9a22dd700b15427fbb7541a78ae97699 { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-02939.RNA-Seq.transcriptome.T.hg38 C3N-02939 PDA RNA-Seq tumor CPT0208480011 ab068e90-f23f-46f8-aa70-d18903824ecf.rna_seq.transcriptome.gdc_realn.bam 11523593974 BAM transcriptome harmonized CPTAC3 102ee5b7-af73-4ba1-92c3-ea4b0dcc5ee7 0a10f1e3f99e0b17a0f5c5ce503a0a4f { 'aliquot_tag': 'ALQ_c023312c', 'gdc_sample_type': 'Primary Tumor' } C3N-02939.WGS.N C3N-02939 PDA WGS blood_normal CPT0208540002 CPT0208540002.WholeGenome.RP-1303.bam 72421600755 BAM aligned CPTAC3 4771a883-04a4-4c46-afcd-5047c6750e0c df67b8132c986870befcbbb7529fc573 { 'aliquot_tag': 'ALQ_4e9d6f73', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02939.WGS.N.hg38 C3N-02939 PDA WGS blood_normal CPT0208540002 786fe640-bffb-4258-9f8e-1fd04e0500bb_wgs_gdc_realn.bam 105810346763 BAM harmonized CPTAC3 9c481c93-8369-4946-b619-4b8e541dbdc1 6c62be682a4ffe872b1a7550db31963c { 'aliquot_tag': 'ALQ_4e9d6f73', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02939.WGS.T C3N-02939 PDA WGS tumor CPT0208480008 CPT0208480008.WholeGenome.RP-1303.bam 114037483343 BAM aligned CPTAC3 d9f127b6-9afc-4337-89e0-8fe83d4751d2 4f3c7e46a2f43c05af742dc099bc3878 { 'aliquot_tag': 'ALQ_a0e4b8c9', 'gdc_sample_type': 'Primary Tumor' } @@ -33416,9 +35655,9 @@ C3N-02940.MethArray.Red.T C3N-02940 PDA Methylation Array tumor CPT0208550008 20 C3N-02940.miRNA-Seq.T C3N-02940 PDA miRNA-Seq tumor CPT0208550011 190712_UNC32-K00270_0192_BH7HL3BBXY_CATGGC_S10_L004_R1_001.unaln.bam 217144472 BAM unaligned CPTAC3 ed9e8e30-267d-4701-b546-3d32dd07d4b5 7fcff98e647194ff127e214ea67c6677 { 'aliquot_tag': 'ALQ_f3ef2638', 'gdc_sample_type': 'Primary Tumor' } C3N-02940.miRNA-Seq.T.hg38 C3N-02940 PDA miRNA-Seq tumor CPT0208550011 ab5cec90-101d-4298-b3a9-b9b262166e74_mirnaseq_gdc_realn.bam 243116604 BAM harmonized CPTAC3 4934fc92-aaf2-4f2e-8040-0b258029e7b4 659e486ae9ab8aab77ba297e6ad68cf1 { 'aliquot_tag': 'ALQ_f3ef2638', 'gdc_sample_type': 'Primary Tumor' } C3N-02940.RNA-Seq.chimeric.T.hg38 C3N-02940 PDA RNA-Seq tumor CPT0208550011 77dd6ad5-7ac2-4cfd-86d7-528dfa3feb39.rna_seq.chimeric.gdc_realn.bam 32706474 BAM chimeric harmonized CPTAC3 bd5cab3d-6f15-4763-bc09-8d8aca111f4c 4e74363ca84ea662f7e1cbff98c445be { 'aliquot_tag': 'ALQ_f3ef2638', 'gdc_sample_type': 'Primary Tumor' } -C3N-02940.RNA-Seq.genomic.T.hg38 C3N-02940 PDA RNA-Seq tumor CPT0208550011 77dd6ad5-7ac2-4cfd-86d7-528dfa3feb39.rna_seq.genomic.gdc_realn.bam 8921882831 BAM genomic harmonized CPTAC3 7621d8fb-55ae-4634-be4e-2f9a36b29ab1 134d9ca3c27b34f6bfd49a9524b810e1 { 'aliquot_tag': 'ALQ_f3ef2638', 'gdc_sample_type': 'Primary Tumor' } -C3N-02940.RNA-Seq.R1_L001.T C3N-02940 PDA RNA-Seq tumor CPT0208550011 190621_UNC32-K00270_0185_BH7G72BBXY_GGTCACGA-GTATTATG_S1_L001_R1_001.fastq.gz 4151583531 FASTQ R1_L001 unaligned CPTAC3 12195ec0-93e5-4954-b0b7-d370a3bb987c f518659fb01684adc09910f33a830dc0 { 'aliquot_tag': 'ALQ_f3ef2638', 'gdc_sample_type': 'Primary Tumor' } -C3N-02940.RNA-Seq.R2_L001.T C3N-02940 PDA RNA-Seq tumor CPT0208550011 190621_UNC32-K00270_0185_BH7G72BBXY_GGTCACGA-GTATTATG_S1_L001_R2_001.fastq.gz 4556358988 FASTQ R2_L001 unaligned CPTAC3 64eb7ddd-348c-47f6-ad53-e7c62b014ee5 588b1a5745dfb40db8c9ba8bb22f4f67 { 'aliquot_tag': 'ALQ_f3ef2638', 'gdc_sample_type': 'Primary Tumor' } +C3N-02940.RNA-Seq.genomic.T.hg38 C3N-02940 PDA RNA-Seq tumor CPT0208550011 77dd6ad5-7ac2-4cfd-86d7-528dfa3feb39.rna_seq.genomic.gdc_realn.bam 8921882831 BAM genomic harmonized CPTAC3 0b787e14-e52c-41da-bb85-b82ff4e326c1 134d9ca3c27b34f6bfd49a9524b810e1 { 'aliquot_tag': 'ALQ_f3ef2638', 'gdc_sample_type': 'Primary Tumor' } +C3N-02940.RNA-Seq.R1_L001.T C3N-02940 PDA RNA-Seq tumor CPT0208550011 190621_UNC32-K00270_0185_BH7G72BBXY_GGTCACGA-GTATTATG_S1_L001_R1_001.fastq.gz 4151583531 FASTQ R1_L001 unaligned CPTAC3 12195ec0-93e5-4954-b0b7-d370a3bb987c f518659fb01684adc09910f33a830dc0 { 'aliquot_tag': 'ALQ_f3ef2638', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-02940.RNA-Seq.R2_L001.T C3N-02940 PDA RNA-Seq tumor CPT0208550011 190621_UNC32-K00270_0185_BH7G72BBXY_GGTCACGA-GTATTATG_S1_L001_R2_001.fastq.gz 4556358988 FASTQ R2_L001 unaligned CPTAC3 64eb7ddd-348c-47f6-ad53-e7c62b014ee5 588b1a5745dfb40db8c9ba8bb22f4f67 { 'aliquot_tag': 'ALQ_f3ef2638', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-02940.RNA-Seq.transcriptome.T.hg38 C3N-02940 PDA RNA-Seq tumor CPT0208550011 77dd6ad5-7ac2-4cfd-86d7-528dfa3feb39.rna_seq.transcriptome.gdc_realn.bam 12395387771 BAM transcriptome harmonized CPTAC3 a094f9e9-1ceb-49c0-b780-de87fc1204a3 c1dab14b4c1b6e0703ec94d029aba75e { 'aliquot_tag': 'ALQ_f3ef2638', 'gdc_sample_type': 'Primary Tumor' } C3N-02940.WGS.N C3N-02940 PDA WGS blood_normal CPT0208610002 CPT0208610002.WholeGenome.RP-1303.bam 84745515077 BAM aligned CPTAC3 500425cd-9ad0-4658-a53c-dcc7bb8b8409 c71cc27266cb39643aec1155b84c617b { 'aliquot_tag': 'ALQ_e992ad', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02940.WGS.N.hg38 C3N-02940 PDA WGS blood_normal CPT0208610002 44b36cfd-aba7-45da-a49a-14d4223dd59c_wgs_gdc_realn.bam 122231007671 BAM harmonized CPTAC3 45b0a730-f9e2-48d5-9f4b-29839c51a300 0541b1489ca6272cee85c84a1c53a8e6 { 'aliquot_tag': 'ALQ_e992ad', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33435,9 +35674,9 @@ C3N-02944.MethArray.Red.T C3N-02944 PDA Methylation Array tumor CPT0208690013 20 C3N-02944.miRNA-Seq.T C3N-02944 PDA miRNA-Seq tumor CPT0208690010 190813_UNC32-K00270_0196_AH5MCWBBXY_CAACTA_S14_L003_R1_001.unaln.bam 272027155 BAM unaligned CPTAC3 ab6865fe-00b0-4589-b19b-9afada7ce28f 8a507e94bff060eb71d8ea2276dd485c { 'aliquot_tag': 'ALQ_c78c8901', 'gdc_sample_type': 'Primary Tumor' } C3N-02944.miRNA-Seq.T.hg38 C3N-02944 PDA miRNA-Seq tumor CPT0208690010 98aa57dc-0f8f-4ce8-97db-bccef77dad07_mirnaseq_gdc_realn.bam 309680936 BAM harmonized CPTAC3 0afc362c-0c67-4c09-8ea3-9919101c5b6e da60daf2f5985027a194f6d129089db7 { 'aliquot_tag': 'ALQ_c78c8901', 'gdc_sample_type': 'Primary Tumor' } C3N-02944.RNA-Seq.chimeric.T.hg38 C3N-02944 PDA RNA-Seq tumor CPT0208690010 c27b795e-3291-4008-9f7a-73cfdd76a76d.rna_seq.chimeric.gdc_realn.bam 39273050 BAM chimeric harmonized CPTAC3 3a044b64-a185-45a8-b63c-2d88ade2e02f df66ff7a715420988fdda90bbfe26c91 { 'aliquot_tag': 'ALQ_c78c8901', 'gdc_sample_type': 'Primary Tumor' } -C3N-02944.RNA-Seq.genomic.T.hg38 C3N-02944 PDA RNA-Seq tumor CPT0208690010 c27b795e-3291-4008-9f7a-73cfdd76a76d.rna_seq.genomic.gdc_realn.bam 7926634596 BAM genomic harmonized CPTAC3 b486cc08-c087-4414-acf2-23a28bbb0e61 c8f9edaf39118db0b2f322ad3f9beba4 { 'aliquot_tag': 'ALQ_c78c8901', 'gdc_sample_type': 'Primary Tumor' } -C3N-02944.RNA-Seq.R1_L007.T C3N-02944 PDA RNA-Seq tumor CPT0208690010 190702_UNC32-K00270_0187_AH7FK2BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R1_001.fastq.gz 3715954933 FASTQ R1_L007 unaligned CPTAC3 a16118f0-9917-462e-9f2b-e0dccad0e451 0cda7e80bd51d38aae619f812743cb97 { 'aliquot_tag': 'ALQ_c78c8901', 'gdc_sample_type': 'Primary Tumor' } -C3N-02944.RNA-Seq.R2_L007.T C3N-02944 PDA RNA-Seq tumor CPT0208690010 190702_UNC32-K00270_0187_AH7FK2BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R2_001.fastq.gz 4190689530 FASTQ R2_L007 unaligned CPTAC3 3742f936-63b0-4d14-a370-6a0f99de9ec3 e25afb246a4bb6855a2d01e25df92513 { 'aliquot_tag': 'ALQ_c78c8901', 'gdc_sample_type': 'Primary Tumor' } +C3N-02944.RNA-Seq.genomic.T.hg38 C3N-02944 PDA RNA-Seq tumor CPT0208690010 c27b795e-3291-4008-9f7a-73cfdd76a76d.rna_seq.genomic.gdc_realn.bam 7926634596 BAM genomic harmonized CPTAC3 8bc97bd1-69e9-4fc1-9d52-c1810ec51ef9 c8f9edaf39118db0b2f322ad3f9beba4 { 'aliquot_tag': 'ALQ_c78c8901', 'gdc_sample_type': 'Primary Tumor' } +C3N-02944.RNA-Seq.R1_L007.T C3N-02944 PDA RNA-Seq tumor CPT0208690010 190702_UNC32-K00270_0187_AH7FK2BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R1_001.fastq.gz 3715954933 FASTQ R1_L007 unaligned CPTAC3 a16118f0-9917-462e-9f2b-e0dccad0e451 0cda7e80bd51d38aae619f812743cb97 { 'aliquot_tag': 'ALQ_c78c8901', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02944.RNA-Seq.R2_L007.T C3N-02944 PDA RNA-Seq tumor CPT0208690010 190702_UNC32-K00270_0187_AH7FK2BBXY_CGGCGTGA-GCGCCTGT_S22_L007_R2_001.fastq.gz 4190689530 FASTQ R2_L007 unaligned CPTAC3 3742f936-63b0-4d14-a370-6a0f99de9ec3 e25afb246a4bb6855a2d01e25df92513 { 'aliquot_tag': 'ALQ_c78c8901', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-02944.RNA-Seq.transcriptome.T.hg38 C3N-02944 PDA RNA-Seq tumor CPT0208690010 c27b795e-3291-4008-9f7a-73cfdd76a76d.rna_seq.transcriptome.gdc_realn.bam 10589680598 BAM transcriptome harmonized CPTAC3 572b6318-0628-40c8-a54e-5b034138ba24 9f8b808926f8f2588960de8ee3864ec5 { 'aliquot_tag': 'ALQ_c78c8901', 'gdc_sample_type': 'Primary Tumor' } C3N-02944.WGS.N C3N-02944 PDA WGS blood_normal CPT0208750002 CPT0208750002.WholeGenome.RP-1303.bam 73333015827 BAM aligned CPTAC3 06aa9719-fb58-48e3-ac5b-f2940b060118 34550eadc3a0bb8a8c13994306f2a450 { 'aliquot_tag': 'ALQ_3e35e7c8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02944.WGS.N.hg38 C3N-02944 PDA WGS blood_normal CPT0208750002 0b0faaf9-f88c-412a-a9b9-6b138aabe624_wgs_gdc_realn.bam 105736994637 BAM harmonized CPTAC3 58123efd-28db-4505-8149-7c5a150f5b3d c8f236796adc671f1fb42a21307e5fab { 'aliquot_tag': 'ALQ_3e35e7c8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33457,16 +35696,16 @@ C3N-02945.miRNA-Seq.A C3N-02945 CCRCC miRNA-Seq tissue_normal CPT0158980009 1901 C3N-02945.miRNA-Seq.A.hg38 C3N-02945 CCRCC miRNA-Seq tissue_normal CPT0158980009 a3839eb3-ad79-41ca-9a53-e34937b2f12f_mirnaseq_gdc_realn.bam 227240011 BAM harmonized CPTAC3 06321102-e38e-449e-85da-2fc7f246a397 a8f9c70bea1de77df1d7265ea999ab8e { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02945.miRNA-Seq.T C3N-02945 CCRCC miRNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0176_AHYGLVBBXX_TACAGC_S43_L005_R1_001.unaln.bam 261991195 BAM unaligned CPTAC3 4c58ae99-f7ce-4f25-a3e8-4ba6d9bb027e f82b0322080dc2db98a98324c2a14bdf { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor' } C3N-02945.miRNA-Seq.T.hg38 C3N-02945 CCRCC miRNA-Seq tumor CPT0158950006 0b46c18b-18a8-4aed-9661-a18ca9111d15_mirnaseq_gdc_realn.bam 284176114 BAM harmonized CPTAC3 3c543e8b-2240-4c96-a32b-f4f7196fcd95 6211d5914585ae4fc7d82edf2aa998a6 { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor' } -C3N-02945.RNA-Seq.chimeric.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 ebc00932-14a1-4e68-b846-6d4f31004238.rna_seq.chimeric.gdc_realn.bam 128346695 BAM chimeric harmonized CPTAC3 5d5a2246-dac3-4e0a-bc52-5962c3585a07 0d2eef662a62dd169bab9110aa0681a2 { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02945.RNA-Seq.chimeric.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 10bebbbe-e9bb-4f4a-a9d8-8636411597fd.rna_seq.chimeric.gdc_realn.bam 55212884 BAM chimeric harmonized CPTAC3 17c2479a-f5af-48a8-bce1-bcc053bb5ed3 e79eac25bb545d701392dea6c8eb7582 { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor' } -C3N-02945.RNA-Seq.genomic.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 ebc00932-14a1-4e68-b846-6d4f31004238.rna_seq.genomic.gdc_realn.bam 8764169101 BAM genomic harmonized CPTAC3 333fd1e1-5fd0-4493-bfc0-234aa499bfae a2476f37ec18c201b62987087ab4fe1f { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02945.RNA-Seq.genomic.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 10bebbbe-e9bb-4f4a-a9d8-8636411597fd.rna_seq.genomic.gdc_realn.bam 8441136487 BAM genomic harmonized CPTAC3 e7e2f933-b23f-43e4-856c-3d5ea34245fd daef467b04aaf17e3362667d9fe23d8d { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor' } -C3N-02945.RNA-Seq.R1_L006.T C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 4114464795 FASTQ R1_L006 unaligned CPTAC3 2232e9a7-eec5-459e-bacb-7de492449159 8b0664029ffe1db736c02d866a1be1d2 { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor' } -C3N-02945.RNA-Seq.R1_L007.A C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 190117_UNC31-K00269_0180_AH35VKBBXY_GTTTCG_S20_L007_R1_001.fastq.gz 3711664566 FASTQ R1_L007 unaligned CPTAC3 09ed5081-1674-47ea-9135-f4de72596214 5fed27f54c9e912a132955f2f9ef1b45 { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02945.RNA-Seq.R2_L006.T C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4198120178 FASTQ R2_L006 unaligned CPTAC3 288b60bc-4549-4319-9761-b001886cc5b6 1468837e70d090c633721b4320a832fe { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor' } -C3N-02945.RNA-Seq.R2_L007.A C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 190117_UNC31-K00269_0180_AH35VKBBXY_GTTTCG_S20_L007_R2_001.fastq.gz 4051310218 FASTQ R2_L007 unaligned CPTAC3 7db8b6f0-4f4a-483d-a7bb-dd3317582474 1460b4e894a23d2d1d8c7b6639211ca6 { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02945.RNA-Seq.transcriptome.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 ebc00932-14a1-4e68-b846-6d4f31004238.rna_seq.transcriptome.gdc_realn.bam 8161989289 BAM transcriptome harmonized CPTAC3 47e5da95-5613-4eb1-8bbe-7473c9315b14 ce9a307244fe5477c31f1f118ae7c39c { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02945.RNA-Seq.transcriptome.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 10bebbbe-e9bb-4f4a-a9d8-8636411597fd.rna_seq.transcriptome.gdc_realn.bam 9829677513 BAM transcriptome harmonized CPTAC3 44aec406-d07d-4e4a-8e54-5713ecbe5107 4c204ca2cc9ab055c4f0c27c08b4d3db { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor' } +C3N-02945.RNA-Seq.chimeric.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 2f511e74-45a4-463d-8e8e-5060a0e7b5e0.rna_seq.chimeric.gdc_realn.bam 128323409 BAM chimeric harmonized CPTAC3 a805319c-dbcd-4f68-afee-1d37684bd22e 73b935eb17a864fa531d493c5a393f9b { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02945.RNA-Seq.chimeric.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 1e7abb00-ed2c-4533-9ead-bae78530cf08.rna_seq.chimeric.gdc_realn.bam 55191554 BAM chimeric harmonized CPTAC3 7c30b84d-41b3-4b7e-bc5d-bcffdfd4fe57 ea16d13a6aabec98d20f1aa5bcd2a440 { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor' } +C3N-02945.RNA-Seq.genomic.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 2f511e74-45a4-463d-8e8e-5060a0e7b5e0.rna_seq.genomic.gdc_realn.bam 8765246942 BAM genomic harmonized CPTAC3 97e22ccc-ce51-4712-9ce3-3968c9663efc f5b66f08d35f233d24e1fb016a3629f6 { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02945.RNA-Seq.genomic.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 1e7abb00-ed2c-4533-9ead-bae78530cf08.rna_seq.genomic.gdc_realn.bam 8442196812 BAM genomic harmonized CPTAC3 9c841274-2030-46c0-b1eb-d4522a5af289 3ca33fd460fb48f9ef9a6818be9b3bf0 { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor' } +C3N-02945.RNA-Seq.R1_L006.T C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 4114464795 FASTQ R1_L006 unaligned CPTAC3 2232e9a7-eec5-459e-bacb-7de492449159 8b0664029ffe1db736c02d866a1be1d2 { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-02945.RNA-Seq.R1_L007.A C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 190117_UNC31-K00269_0180_AH35VKBBXY_GTTTCG_S20_L007_R1_001.fastq.gz 3711664566 FASTQ R1_L007 unaligned CPTAC3 09ed5081-1674-47ea-9135-f4de72596214 5fed27f54c9e912a132955f2f9ef1b45 { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-02945.RNA-Seq.R2_L006.T C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 190108_UNC31-K00269_0177_BH32KTBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4198120178 FASTQ R2_L006 unaligned CPTAC3 288b60bc-4549-4319-9761-b001886cc5b6 1468837e70d090c633721b4320a832fe { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-02945.RNA-Seq.R2_L007.A C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 190117_UNC31-K00269_0180_AH35VKBBXY_GTTTCG_S20_L007_R2_001.fastq.gz 4051310218 FASTQ R2_L007 unaligned CPTAC3 7db8b6f0-4f4a-483d-a7bb-dd3317582474 1460b4e894a23d2d1d8c7b6639211ca6 { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-02945.RNA-Seq.transcriptome.A.hg38 C3N-02945 CCRCC RNA-Seq tissue_normal CPT0158980009 2f511e74-45a4-463d-8e8e-5060a0e7b5e0.rna_seq.transcriptome.gdc_realn.bam 9314084437 BAM transcriptome harmonized CPTAC3 e2c3fa3a-d74e-43a2-b06f-57c9d90d06c4 93303725e4e1f2d171b8179be4100d00 { 'aliquot_tag': 'ALQ_1a10a920', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02945.RNA-Seq.transcriptome.T.hg38 C3N-02945 CCRCC RNA-Seq tumor CPT0158950006 1e7abb00-ed2c-4533-9ead-bae78530cf08.rna_seq.transcriptome.gdc_realn.bam 11157997564 BAM transcriptome harmonized CPTAC3 45a82623-f3f2-4df5-a654-ead5470c7d37 dddae7d7bd84bddaabced9d76cb1c826 { 'aliquot_tag': 'ALQ_723f7000', 'gdc_sample_type': 'Primary Tumor' } C3N-02945.WGS.N C3N-02945 CCRCC WGS blood_normal CPT0159450002 CPT0159450002.WholeGenome.RP-1303.bam 55832259556 BAM aligned CPTAC3 8ac4070d-59e0-4073-8220-132a57aaacc5 fa4dceef400bb9e007d7de5429e2b980 { 'aliquot_tag': 'ALQ_6fbbac73', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02945.WGS.N.hg38 C3N-02945 CCRCC WGS blood_normal CPT0159450002 9f78159f-3ac7-4fb0-8386-48b277ad7a62_wgs_gdc_realn.bam 80830314589 BAM harmonized CPTAC3 55c446e5-fec9-453d-99ba-c651d3a4d102 314a51ce359970c6afce41e7d61d7678 { 'aliquot_tag': 'ALQ_6fbbac73', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02945.WGS.T C3N-02945 CCRCC WGS tumor CPT0158950009 CPT0158950009.WholeGenome.RP-1303.bam 132500056449 BAM aligned CPTAC3 6b1a804d-67e1-4308-8587-baf6a85a61bb a8697be813c988804753681a89d91f3b { 'aliquot_tag': 'ALQ_e2806d91', 'gdc_sample_type': 'Primary Tumor' } @@ -33481,13 +35720,16 @@ C3N-02947.MethArray.Green.T C3N-02947 UCEC Methylation Array tumor CPT0158520011 C3N-02947.MethArray.Red.T C3N-02947 UCEC Methylation Array tumor CPT0158520011 203561450018_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 78626fe4-5ebb-436b-b1c4-3fb9abb9fc9d 2720a8650970bae3c007b856f5aa4c39 { 'aliquot_tag': 'ALQ_30a2c889', 'gdc_sample_type': 'Primary Tumor' } C3N-02947.miRNA-Seq.T C3N-02947 UCEC miRNA-Seq tumor CPT0158520014 190508_UNC31-K00269_0215_BH7FYKBBXY_CCGTCC_S16_L003_R1_001.unaln.bam 191975960 BAM unaligned CPTAC3 cdb5ba2d-55f8-4d52-a3e4-6578e7a5a682 5b3a7fc1347aa30921871fe9ce465217 { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor' } C3N-02947.miRNA-Seq.T.hg38 C3N-02947 UCEC miRNA-Seq tumor CPT0158520014 ca87a91d-325c-4a89-b284-27b977337fbc_mirnaseq_gdc_realn.bam 216797226 BAM harmonized CPTAC3 2e1d0e96-2465-48b3-8bdb-f51b8fb5da81 c804bf5e7e6052b8a2d3c24983a2bf0f { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor' } -C3N-02947.RNA-Seq.chimeric.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 010df37b-d177-4a6f-8072-bf2a846913ca.rna_seq.chimeric.gdc_realn.bam 34795776 BAM chimeric harmonized CPTAC3 6401caa8-4deb-4e8b-9da9-78a5bccf072e 6dfd0198e23046a6d4a436451e4bca03 { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor' } -C3N-02947.RNA-Seq.genomic.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 010df37b-d177-4a6f-8072-bf2a846913ca.rna_seq.genomic.gdc_realn.bam 8704795678 BAM genomic harmonized CPTAC3 0bbf30be-c8ab-48f5-be5d-6870e226b54e b85ea9d3e1d17428d670d09f15ef8718 { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor' } -C3N-02947.RNA-Seq.R1_L007.T C3N-02947 UCEC RNA-Seq tumor CPT0158520014 190523_UNC32-K00270_0176_BH7CW7BBXY_CCATTCGA-GTTGTCCG_S28_L007_R1_001.fastq.gz 3929759241 FASTQ R1_L007 unaligned CPTAC3 d7344ab8-5fc2-4c8c-9d05-d8282f22d3f7 2f353e0faf93274cc1260bf1eadbf704 { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor' } -C3N-02947.RNA-Seq.R1_.T C3N-02947 UCEC RNA-Seq tumor CPT0158570001 20210729_P3_D10_WB7988-Plate3_S46_R1_001.fastq.gz 6142656648 FASTQ R1_ unaligned CPTAC3 b6ae4b9c-1dbf-4a5b-a998-b75a2722b338 595fe13215317ac2804879da6ac375d5 { 'aliquot_tag': 'ALQ_e15976b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02947.RNA-Seq.R2_L007.T C3N-02947 UCEC RNA-Seq tumor CPT0158520014 190523_UNC32-K00270_0176_BH7CW7BBXY_CCATTCGA-GTTGTCCG_S28_L007_R2_001.fastq.gz 4540201390 FASTQ R2_L007 unaligned CPTAC3 6d5aed0d-d8ed-4b7c-8dfe-df4805167f6d 48b3fcadc8abeb67baaf192ce6dd3581 { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor' } -C3N-02947.RNA-Seq.R2_.T C3N-02947 UCEC RNA-Seq tumor CPT0158570001 20210729_P3_D10_WB7988-Plate3_S46_R2_001.fastq.gz 6391118314 FASTQ R2_ unaligned CPTAC3 def1649a-845a-4a01-90a4-ef9d55653ab2 1e6d500173112ea6ab05eee95cc4a8f2 { 'aliquot_tag': 'ALQ_e15976b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02947.RNA-Seq.transcriptome.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 010df37b-d177-4a6f-8072-bf2a846913ca.rna_seq.transcriptome.gdc_realn.bam 10089054662 BAM transcriptome harmonized CPTAC3 77d6577e-4a57-440c-a4f7-73f74f18cbba d4888352fac4f2f580715940bca16100 { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor' } +C3N-02947.RNA-Seq.chimeric.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 9f4d32b3-1226-4ffe-9766-1f7b9e335b31.rna_seq.chimeric.gdc_realn.bam 34785528 BAM chimeric harmonized CPTAC3 2babc294-03fd-4ca2-9109-2f66f637c24e 7478278162add236b66f226b1101357a { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor' } +C3N-02947.RNA-Seq.chimeric.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158570001 b80d95b3-3631-40e9-9b5a-f98e2dea28de.rna_seq.chimeric.gdc_realn.bam 179911515 BAM chimeric harmonized CPTAC3 1dd35833-9fd1-4f7a-b263-dcd7e1d1d4c3 3966cf27a0021c5469333f846cd33306 { 'aliquot_tag': 'ALQ_e15976b8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02947.RNA-Seq.genomic.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 9f4d32b3-1226-4ffe-9766-1f7b9e335b31.rna_seq.genomic.gdc_realn.bam 8705116109 BAM genomic harmonized CPTAC3 dd5f0fa8-db2f-460e-b3b2-cf8dbbb493ba af1e90b16c734c3cdb673b79f3229b59 { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor' } +C3N-02947.RNA-Seq.genomic.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158570001 b80d95b3-3631-40e9-9b5a-f98e2dea28de.rna_seq.genomic.gdc_realn.bam 8845754724 BAM genomic harmonized CPTAC3 e029bf40-4884-4c21-ad59-1ee267ca0a0b f8ef3fc560206a44ba9995422c0a1a98 { 'aliquot_tag': 'ALQ_e15976b8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02947.RNA-Seq.R1_L007.T C3N-02947 UCEC RNA-Seq tumor CPT0158520014 190523_UNC32-K00270_0176_BH7CW7BBXY_CCATTCGA-GTTGTCCG_S28_L007_R1_001.fastq.gz 3929759241 FASTQ R1_L007 unaligned CPTAC3 d7344ab8-5fc2-4c8c-9d05-d8282f22d3f7 2f353e0faf93274cc1260bf1eadbf704 { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-02947.RNA-Seq.R2_L007.T C3N-02947 UCEC RNA-Seq tumor CPT0158520014 190523_UNC32-K00270_0176_BH7CW7BBXY_CCATTCGA-GTTGTCCG_S28_L007_R2_001.fastq.gz 4540201390 FASTQ R2_L007 unaligned CPTAC3 6d5aed0d-d8ed-4b7c-8dfe-df4805167f6d 48b3fcadc8abeb67baaf192ce6dd3581 { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-02947.RNA-Seq.T C3N-02947 UCEC RNA-Seq tumor CPT0158570001 20210729_P3_D10_WB7988-Plate3_S46_R1_001.fastq.gz 6142656648 FASTQ unaligned CPTAC3 b6ae4b9c-1dbf-4a5b-a998-b75a2722b338 595fe13215317ac2804879da6ac375d5 +C3N-02947.RNA-Seq.T C3N-02947 UCEC RNA-Seq tumor CPT0158570001 20210729_P3_D10_WB7988-Plate3_S46_R2_001.fastq.gz 6391118314 FASTQ unaligned CPTAC3 def1649a-845a-4a01-90a4-ef9d55653ab2 1e6d500173112ea6ab05eee95cc4a8f2 +C3N-02947.RNA-Seq.transcriptome.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158520014 9f4d32b3-1226-4ffe-9766-1f7b9e335b31.rna_seq.transcriptome.gdc_realn.bam 11554955482 BAM transcriptome harmonized CPTAC3 b9f8f644-bb79-4480-b724-8bdda804ebe4 9957b28a7d0130024b3576858bc81458 { 'aliquot_tag': 'ALQ_40c83c06', 'gdc_sample_type': 'Primary Tumor' } +C3N-02947.RNA-Seq.transcriptome.T.hg38 C3N-02947 UCEC RNA-Seq tumor CPT0158570001 b80d95b3-3631-40e9-9b5a-f98e2dea28de.rna_seq.transcriptome.gdc_realn.bam 7062899798 BAM transcriptome harmonized CPTAC3 d33c4f77-8f04-4e7e-8cf2-12e615f62610 01a60f708c6fa8d010609bbe9a78bb99 { 'aliquot_tag': 'ALQ_e15976b8', 'gdc_sample_type': 'Primary Tumor' } C3N-02947.WGS.N C3N-02947 UCEC WGS blood_normal CPT0159460002 CPT0159460002.WholeGenome.RP-1303.bam 66925906042 BAM aligned CPTAC3 466f6cf0-f37b-4601-a9f4-309b3c68a1f1 5d81f5666d7ba04daaabb226aa2c19db { 'aliquot_tag': 'ALQ_281bd6a3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02947.WGS.N.hg38 C3N-02947 UCEC WGS blood_normal CPT0159460002 e084a54c-56f3-4760-b98f-16f0b6e7f209_wgs_gdc_realn.bam 97428746518 BAM harmonized CPTAC3 2bcabd4e-2788-4643-9ca4-2250d1d01756 3b922e0fd033048187a72468c1efe9f6 { 'aliquot_tag': 'ALQ_281bd6a3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02947.WGS.T C3N-02947 UCEC WGS tumor CPT0158520011 CPT0158520011.WholeGenome.RP-1303.bam 54502609402 BAM aligned CPTAC3 74578276-4c6e-45ec-8724-c8981d7daec2 9c8e0271aa9ebeea6df90459663b8ad6 { 'aliquot_tag': 'ALQ_30a2c889', 'gdc_sample_type': 'Primary Tumor' } @@ -33504,16 +35746,16 @@ C3N-02948.miRNA-Seq.A C3N-02948 LUAD miRNA-Seq tissue_normal CPT0185650009 19071 C3N-02948.miRNA-Seq.A.hg38 C3N-02948 LUAD miRNA-Seq tissue_normal CPT0185650009 0f175fc8-3935-47ee-a6e4-7fadf7ea340f_mirnaseq_gdc_realn.bam 258577939 BAM harmonized CPTAC3 93dc8575-e0b5-4964-82af-0ad1de0e24f2 ba3036494fea25f78e245b2de944e646 { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02948.miRNA-Seq.T C3N-02948 LUAD miRNA-Seq tumor CPT0185620010 190722_UNC31-K00269_0234_AH7VGTBBXY_ATGAGC_S22_L004_R1_001.unaln.bam 189178718 BAM unaligned CPTAC3 9dd09d20-95fe-4ff0-82aa-3415add1ff5c 7450d9b1c6195f93e86790d283cb311b { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor' } C3N-02948.miRNA-Seq.T.hg38 C3N-02948 LUAD miRNA-Seq tumor CPT0185620010 012f3661-775c-4a28-905e-96ce3f3ac64c_mirnaseq_gdc_realn.bam 207341302 BAM harmonized CPTAC3 3b131dba-2aa1-482e-a179-e9a6b16f9d37 71c1d517c8577c26c05dab95f8fe732f { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02948.RNA-Seq.chimeric.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 3cef9dd8-ddac-43fa-8c0d-ac3774c840fc.rna_seq.chimeric.gdc_realn.bam 39153693 BAM chimeric harmonized CPTAC3 cdd83c9b-1eec-4464-b37b-bc22d43903e3 2369efbb61d7bf2f5c03e7d84a68bc86 { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02948.RNA-Seq.chimeric.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 26d14dfe-8a0f-476a-9f3e-0382ee2200fa.rna_seq.chimeric.gdc_realn.bam 28282326 BAM chimeric harmonized CPTAC3 a1ffc559-9e2c-485e-acf1-ff2449ab86e7 2b063763514d4facb08ee25ac85c2835 { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02948.RNA-Seq.genomic.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 3cef9dd8-ddac-43fa-8c0d-ac3774c840fc.rna_seq.genomic.gdc_realn.bam 8085752676 BAM genomic harmonized CPTAC3 4cd0221f-d6b2-45f5-bc2c-270d7791402b 14a7ba6c98a8968ffc64615cad5d3a65 { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02948.RNA-Seq.genomic.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 26d14dfe-8a0f-476a-9f3e-0382ee2200fa.rna_seq.genomic.gdc_realn.bam 12819605586 BAM genomic harmonized CPTAC3 b243cf7c-feee-4a0a-8943-f7d7529f049e 2f29a7c9df7dffa88eb732777d30146a { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02948.RNA-Seq.R1_L005.A C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGGACTC-GGAAGCAG_S17_L005_R1_001.fastq.gz 3551294006 FASTQ R1_L005 unaligned CPTAC3 b4c4c9e6-b65a-49a2-abb1-4d5a9ef3b75b aaf9b6579fc9842609184ba9f45c8328 { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02948.RNA-Seq.R1_L008.T C3N-02948 LUAD RNA-Seq tumor CPT0185620010 190604_UNC32-K00270_0177_AH7F5VBBXY_GTCGGAGC-GGTTATAA_S30_L008_R1_001.fastq.gz 3708317803 FASTQ R1_L008 unaligned CPTAC3 c7c365e2-62a5-4ecb-9082-98ba487225c8 5888717a88a647878fb532f7ea585f82 { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02948.RNA-Seq.R2_L005.A C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGGACTC-GGAAGCAG_S17_L005_R2_001.fastq.gz 3659272092 FASTQ R2_L005 unaligned CPTAC3 87028c31-f91a-441a-afe7-076d22314769 8287659f04cda706fafcafc66a4c2dc0 { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02948.RNA-Seq.R2_L008.T C3N-02948 LUAD RNA-Seq tumor CPT0185620010 190604_UNC32-K00270_0177_AH7F5VBBXY_GTCGGAGC-GGTTATAA_S30_L008_R2_001.fastq.gz 4185413458 FASTQ R2_L008 unaligned CPTAC3 25ab23a6-374d-4668-ae34-3f02353df9fd 7581a1d7c5475d57dbc6bb0513ea0ce6 { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02948.RNA-Seq.transcriptome.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 3cef9dd8-ddac-43fa-8c0d-ac3774c840fc.rna_seq.transcriptome.gdc_realn.bam 7437405581 BAM transcriptome harmonized CPTAC3 6c9e1fae-a382-4f26-9cf3-421fff3b49cc 53fb1a874cdc5eb3686b7efb59eeedc6 { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02948.RNA-Seq.transcriptome.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 26d14dfe-8a0f-476a-9f3e-0382ee2200fa.rna_seq.transcriptome.gdc_realn.bam 8808465117 BAM transcriptome harmonized CPTAC3 65da9d51-d19f-473e-b718-a113f4ffbe07 51e1177ef426db9e583b1e4ceba2734a { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02948.RNA-Seq.chimeric.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 df6561e1-515d-4033-83f4-d722576ff811.rna_seq.chimeric.gdc_realn.bam 39129540 BAM chimeric harmonized CPTAC3 85b11dfb-bb4f-42a6-b4af-9c8b62f57293 98d4bde868e841bbfba05c97bfb57419 { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02948.RNA-Seq.chimeric.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 0245dddc-1b8b-499e-bb1f-3e4fdcc92ed9.rna_seq.chimeric.gdc_realn.bam 28269583 BAM chimeric harmonized CPTAC3 edeba805-334a-447a-84b8-b4509814fbd7 ff4914d2a31b5af99d33c5745807e004 { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02948.RNA-Seq.genomic.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 df6561e1-515d-4033-83f4-d722576ff811.rna_seq.genomic.gdc_realn.bam 8086442759 BAM genomic harmonized CPTAC3 cd331c65-65af-42aa-8f45-974b9dfb255b b9c4cf76f07f14634a0fc31e861f759a { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02948.RNA-Seq.genomic.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 0245dddc-1b8b-499e-bb1f-3e4fdcc92ed9.rna_seq.genomic.gdc_realn.bam 12820373986 BAM genomic harmonized CPTAC3 f4e913fb-010a-4c45-9ce3-5501c5e9ba62 c640623623b2c8c885f42f39d7ab3505 { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02948.RNA-Seq.R1_L005.A C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGGACTC-GGAAGCAG_S17_L005_R1_001.fastq.gz 3551294006 FASTQ R1_L005 unaligned CPTAC3 b4c4c9e6-b65a-49a2-abb1-4d5a9ef3b75b aaf9b6579fc9842609184ba9f45c8328 { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-02948.RNA-Seq.R1_L008.T C3N-02948 LUAD RNA-Seq tumor CPT0185620010 190604_UNC32-K00270_0177_AH7F5VBBXY_GTCGGAGC-GGTTATAA_S30_L008_R1_001.fastq.gz 3708317803 FASTQ R1_L008 unaligned CPTAC3 c7c365e2-62a5-4ecb-9082-98ba487225c8 5888717a88a647878fb532f7ea585f82 { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02948.RNA-Seq.R2_L005.A C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGGACTC-GGAAGCAG_S17_L005_R2_001.fastq.gz 3659272092 FASTQ R2_L005 unaligned CPTAC3 87028c31-f91a-441a-afe7-076d22314769 8287659f04cda706fafcafc66a4c2dc0 { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-02948.RNA-Seq.R2_L008.T C3N-02948 LUAD RNA-Seq tumor CPT0185620010 190604_UNC32-K00270_0177_AH7F5VBBXY_GTCGGAGC-GGTTATAA_S30_L008_R2_001.fastq.gz 4185413458 FASTQ R2_L008 unaligned CPTAC3 25ab23a6-374d-4668-ae34-3f02353df9fd 7581a1d7c5475d57dbc6bb0513ea0ce6 { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02948.RNA-Seq.transcriptome.A.hg38 C3N-02948 LUAD RNA-Seq tissue_normal CPT0185650009 df6561e1-515d-4033-83f4-d722576ff811.rna_seq.transcriptome.gdc_realn.bam 8337560232 BAM transcriptome harmonized CPTAC3 3fd1fe80-665c-4e39-9d5d-574be67e2894 eaa01ff88d9e799fe7d8416db8075760 { 'aliquot_tag': 'ALQ_e904ab55', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02948.RNA-Seq.transcriptome.T.hg38 C3N-02948 LUAD RNA-Seq tumor CPT0185620010 0245dddc-1b8b-499e-bb1f-3e4fdcc92ed9.rna_seq.transcriptome.gdc_realn.bam 9925918868 BAM transcriptome harmonized CPTAC3 c157653f-0309-4032-983a-5a9adc56dd1f 853127664964c7e47468c879f83af3fa { 'aliquot_tag': 'ALQ_3be3fea0', 'gdc_sample_type': 'Primary Tumor' } C3N-02948.WGS.N C3N-02948 LUAD WGS blood_normal CPT0187250002 CPT0187250002.WholeGenome.RP-1303.bam 77602708506 BAM aligned CPTAC3 d8f328c8-d384-4911-ad97-b27117c08934 10cc204d379c815c9dc2eb06d498aa2f { 'aliquot_tag': 'ALQ_72d821e2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02948.WGS.N.hg38 C3N-02948 LUAD WGS blood_normal CPT0187250002 29d5cb91-d838-44d1-a510-7b9838823be1_wgs_gdc_realn.bam 114951738470 BAM harmonized CPTAC3 bdbf85a0-5ba8-4d35-96df-274af98e9288 d4a9b744a394c7ed7617b594f4411e1e { 'aliquot_tag': 'ALQ_72d821e2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02948.WGS.T C3N-02948 LUAD WGS tumor CPT0185620007 CPT0185620007.WholeGenome.RP-1303.bam 72818149883 BAM aligned CPTAC3 62407993-cd49-4847-b947-63b19d4723ed c67691b6f138fb1918ddb3d35818690e { 'aliquot_tag': 'ALQ_bc9c5a42', 'gdc_sample_type': 'Primary Tumor' } @@ -33530,16 +35772,16 @@ C3N-02950.MethArray.Red.A C3N-02950 LUAD Methylation Array tissue_normal CPT0240 C3N-02950.MethArray.Red.T C3N-02950 LUAD Methylation Array tumor CPT0240910006 203561450102_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 598cb0ae-0ab3-4e3b-80eb-d48738ddfe25 ae2907d4e062cec8782b06e63dfc1689 { 'aliquot_tag': 'ALQ_4177a4fc', 'gdc_sample_type': 'Primary Tumor' } C3N-02950.miRNA-Seq.T C3N-02950 LUAD miRNA-Seq tumor CPT0240910009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCGAAG_S39_L004_R1_001.unaln.bam 204816629 BAM unaligned CPTAC3 9625d2b6-b8a6-447d-be9f-ce47d617ed46 39e7a0d3863b3c8c57d9fed1b67a5a00 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor' } C3N-02950.miRNA-Seq.T.hg38 C3N-02950 LUAD miRNA-Seq tumor CPT0240910009 d98fa8a5-ce62-4083-b405-8d80d3ca147a_mirnaseq_gdc_realn.bam 224788595 BAM harmonized CPTAC3 c2a58361-0ec2-483e-b7aa-36146c797f2a 1ca92f3662eac999ac5a3daaf1490526 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02950.RNA-Seq.chimeric.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 ff0ba453-3b66-4a49-ab10-f099b11f545a.rna_seq.chimeric.gdc_realn.bam 32225400 BAM chimeric harmonized CPTAC3 d39115fb-290d-4c9a-befb-8ff47f139344 25043ebad624121ef31a1e340afd7b05 { 'aliquot_tag': 'ALQ_f6af4a58', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02950.RNA-Seq.chimeric.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 6e6db5ca-1c25-4052-840e-3dc1819e1d1b.rna_seq.chimeric.gdc_realn.bam 26254509 BAM chimeric harmonized CPTAC3 7645449c-44e8-422b-ab68-fa746ed1777d c476f4916a32be616bcacad14b874296 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02950.RNA-Seq.genomic.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 ff0ba453-3b66-4a49-ab10-f099b11f545a.rna_seq.genomic.gdc_realn.bam 7146565185 BAM genomic harmonized CPTAC3 b1bf9bfa-e76c-4bed-ad63-0c6d7fb323fe e9a12e255bbd8f14d5dce61657dab6e3 { 'aliquot_tag': 'ALQ_f6af4a58', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02950.RNA-Seq.genomic.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 6e6db5ca-1c25-4052-840e-3dc1819e1d1b.rna_seq.genomic.gdc_realn.bam 9844268341 BAM genomic harmonized CPTAC3 bdf063b3-c979-454d-b4fe-7d2af58692ee 1727bc0c051cc604479cfa38cc18be05 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02950.RNA-Seq.R1_L003.A C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 190702_UNC32-K00270_0187_AH7FK2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R1_001.fastq.gz 3586732550 FASTQ R1_L003 unaligned CPTAC3 4120f0c1-aad8-4dcc-b07a-01587413a44b 0c1476c054b3154708b0bffac2719683 { 'aliquot_tag': 'ALQ_f6af4a58', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02950.RNA-Seq.R1_L008.T C3N-02950 LUAD RNA-Seq tumor CPT0240910009 190607_UNC32-K00270_0179_BH75W2BBXY_GTTCCAAT-AATTCTGC_S29_L008_R1_001.fastq.gz 3589057668 FASTQ R1_L008 unaligned CPTAC3 cef32c06-5b93-44f0-9038-42d85d25cac8 bb127bc3b71101bf67ce2a744f44aea7 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02950.RNA-Seq.R2_L003.A C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 190702_UNC32-K00270_0187_AH7FK2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R2_001.fastq.gz 3869436944 FASTQ R2_L003 unaligned CPTAC3 c0f6a29e-6657-4040-9001-82372dfa1bd5 d0b96fd58e192525d3006585ebd52e17 { 'aliquot_tag': 'ALQ_f6af4a58', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02950.RNA-Seq.R2_L008.T C3N-02950 LUAD RNA-Seq tumor CPT0240910009 190607_UNC32-K00270_0179_BH75W2BBXY_GTTCCAAT-AATTCTGC_S29_L008_R2_001.fastq.gz 4024516872 FASTQ R2_L008 unaligned CPTAC3 595fc7b1-5409-46be-a102-5e430cf7d252 04d851e88aa7863b9f05e50a6ad012c7 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor' } -C3N-02950.RNA-Seq.transcriptome.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 ff0ba453-3b66-4a49-ab10-f099b11f545a.rna_seq.transcriptome.gdc_realn.bam 7305901839 BAM transcriptome harmonized CPTAC3 30b5f26d-b818-4cb9-b7a0-17a891b90100 aa668d80d8eb4508139f306b782e9bce { 'aliquot_tag': 'ALQ_f6af4a58', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02950.RNA-Seq.transcriptome.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 6e6db5ca-1c25-4052-840e-3dc1819e1d1b.rna_seq.transcriptome.gdc_realn.bam 6606027847 BAM transcriptome harmonized CPTAC3 bb00cb43-74da-485c-b85c-2dab05aff945 89d86763442ea2e7777482bf91918e56 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02950.RNA-Seq.chimeric.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 399689f3-c9d9-41a4-b70f-6f4927c85791.rna_seq.chimeric.gdc_realn.bam 32207451 BAM chimeric harmonized CPTAC3 d8a53cf6-5837-4595-b457-fda5fe74ea58 85c10b3a3ecc3a4f9c278a833de83e28 { 'aliquot_tag': 'ALQ_f6af4a58', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02950.RNA-Seq.chimeric.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 11b2a075-aa65-4704-a35e-61e5528ecfd9.rna_seq.chimeric.gdc_realn.bam 26242453 BAM chimeric harmonized CPTAC3 b9d0c188-8e21-47df-a66a-2c32f8613764 a3f635cf96cec739789a95c8753ee384 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02950.RNA-Seq.genomic.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 399689f3-c9d9-41a4-b70f-6f4927c85791.rna_seq.genomic.gdc_realn.bam 7147464534 BAM genomic harmonized CPTAC3 7e6e9287-b8af-432e-b929-a342489d8c28 0c441a81745a0bbbe6ed7b5ebd03e436 { 'aliquot_tag': 'ALQ_f6af4a58', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02950.RNA-Seq.genomic.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 11b2a075-aa65-4704-a35e-61e5528ecfd9.rna_seq.genomic.gdc_realn.bam 9845052013 BAM genomic harmonized CPTAC3 c853fb94-c580-41af-b766-faed4837b3fb 5ac6e37601a4637acd474a51f7b0a5a2 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor' } +C3N-02950.RNA-Seq.R1_L003.A C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 190702_UNC32-K00270_0187_AH7FK2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R1_001.fastq.gz 3586732550 FASTQ R1_L003 unaligned CPTAC3 4120f0c1-aad8-4dcc-b07a-01587413a44b 0c1476c054b3154708b0bffac2719683 { 'aliquot_tag': 'ALQ_f6af4a58', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-02950.RNA-Seq.R1_L008.T C3N-02950 LUAD RNA-Seq tumor CPT0240910009 190607_UNC32-K00270_0179_BH75W2BBXY_GTTCCAAT-AATTCTGC_S29_L008_R1_001.fastq.gz 3589057668 FASTQ R1_L008 unaligned CPTAC3 cef32c06-5b93-44f0-9038-42d85d25cac8 bb127bc3b71101bf67ce2a744f44aea7 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-02950.RNA-Seq.R2_L003.A C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 190702_UNC32-K00270_0187_AH7FK2BBXY_TTGGACTC-GGAAGCAG_S11_L003_R2_001.fastq.gz 3869436944 FASTQ R2_L003 unaligned CPTAC3 c0f6a29e-6657-4040-9001-82372dfa1bd5 d0b96fd58e192525d3006585ebd52e17 { 'aliquot_tag': 'ALQ_f6af4a58', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-02950.RNA-Seq.R2_L008.T C3N-02950 LUAD RNA-Seq tumor CPT0240910009 190607_UNC32-K00270_0179_BH75W2BBXY_GTTCCAAT-AATTCTGC_S29_L008_R2_001.fastq.gz 4024516872 FASTQ R2_L008 unaligned CPTAC3 595fc7b1-5409-46be-a102-5e430cf7d252 04d851e88aa7863b9f05e50a6ad012c7 { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-02950.RNA-Seq.transcriptome.A.hg38 C3N-02950 LUAD RNA-Seq tissue_normal CPT0240920010 399689f3-c9d9-41a4-b70f-6f4927c85791.rna_seq.transcriptome.gdc_realn.bam 8312548627 BAM transcriptome harmonized CPTAC3 703049b8-2c1b-42e1-a0f1-a4ae51fbf9fd 8533404d0eae790418385d2ef9b5ff8d { 'aliquot_tag': 'ALQ_f6af4a58', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02950.RNA-Seq.transcriptome.T.hg38 C3N-02950 LUAD RNA-Seq tumor CPT0240910009 11b2a075-aa65-4704-a35e-61e5528ecfd9.rna_seq.transcriptome.gdc_realn.bam 7539983771 BAM transcriptome harmonized CPTAC3 cb8a10e5-27cf-4c78-a43c-235d10345721 14b2a795f28a86eff4ae9b54a846f92a { 'aliquot_tag': 'ALQ_d1c8b96d', 'gdc_sample_type': 'Primary Tumor' } C3N-02950.WGS.N C3N-02950 LUAD WGS blood_normal CPT0241780002 CPT0241780002.WholeGenome.RP-1303.bam 56278523062 BAM aligned CPTAC3 5aeb8f3d-1b34-41e6-bf13-91c9124110a4 0f7321309efff3030fc0052442c44cd5 { 'aliquot_tag': 'ALQ_d7776850', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02950.WGS.N.hg38 C3N-02950 LUAD WGS blood_normal CPT0241780002 8db3824d-3953-4244-9a56-695278778c6a_wgs_gdc_realn.bam 82136358474 BAM harmonized CPTAC3 337f6981-3213-4d35-9d42-e180cc32d448 1b62fba8bd6f598d8b40e901be10fde9 { 'aliquot_tag': 'ALQ_d7776850', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02950.WGS.T C3N-02950 LUAD WGS tumor CPT0240910006 CPT0240910006.WholeGenome.RP-1303.bam 72303463868 BAM aligned CPTAC3 e9752a03-7230-4ef0-972d-1c377bcad282 beb1a2dabdb918d1a6686096e978213c { 'aliquot_tag': 'ALQ_4177a4fc', 'gdc_sample_type': 'Primary Tumor' } @@ -33555,9 +35797,9 @@ C3N-02971.MethArray.Red.T C3N-02971 PDA Methylation Array tumor CPT0185920007 20 C3N-02971.miRNA-Seq.T C3N-02971 PDA miRNA-Seq tumor CPT0185920010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGAAG_S23_L006_R1_001.unaln.bam 217059740 BAM unaligned CPTAC3 4540adf0-2dbc-479a-84a9-d6bee606b0f7 4c59831aaa4f5e0c38267b6866f5374b { 'aliquot_tag': 'ALQ_cab54c75', 'gdc_sample_type': 'Primary Tumor' } C3N-02971.miRNA-Seq.T.hg38 C3N-02971 PDA miRNA-Seq tumor CPT0185920010 1712f055-afd7-4a31-bdce-6ea9b55c36a3_mirnaseq_gdc_realn.bam 242812683 BAM harmonized CPTAC3 d94e3bcb-f12d-4b67-b6fd-04765d5c0ef7 6d7c1345998811a2e7569a89195487cd { 'aliquot_tag': 'ALQ_cab54c75', 'gdc_sample_type': 'Primary Tumor' } C3N-02971.RNA-Seq.chimeric.T.hg38 C3N-02971 PDA RNA-Seq tumor CPT0185920010 1b91ef76-87e5-4177-9040-3af94f5bf43f.rna_seq.chimeric.gdc_realn.bam 183418031 BAM chimeric harmonized CPTAC3 b7e0a69d-20b6-44f8-9455-53ff24d66e02 fda5770cc018a3e2583a733338c6ff7e { 'aliquot_tag': 'ALQ_cab54c75', 'gdc_sample_type': 'Primary Tumor' } -C3N-02971.RNA-Seq.genomic.T.hg38 C3N-02971 PDA RNA-Seq tumor CPT0185920010 1b91ef76-87e5-4177-9040-3af94f5bf43f.rna_seq.genomic.gdc_realn.bam 10627923723 BAM genomic harmonized CPTAC3 917ad0d9-7562-4ebb-ab46-46a2797706d1 c848697374921a4a27e6bb2789d5f0d7 { 'aliquot_tag': 'ALQ_cab54c75', 'gdc_sample_type': 'Primary Tumor' } -C3N-02971.RNA-Seq.R1_L002.T C3N-02971 PDA RNA-Seq tumor CPT0185920010 190614_UNC32-K00270_0182_BH7777BBXY_GTTCCAAT-AATTCTGC_S7_L002_R1_001.fastq.gz 4121970006 FASTQ R1_L002 unaligned CPTAC3 f8b3b37d-3f83-4bd1-be99-9f1d32051fd2 280aaf28980c838a861b74d7b371a4ee { 'aliquot_tag': 'ALQ_cab54c75', 'gdc_sample_type': 'Primary Tumor' } -C3N-02971.RNA-Seq.R2_L002.T C3N-02971 PDA RNA-Seq tumor CPT0185920010 190614_UNC32-K00270_0182_BH7777BBXY_GTTCCAAT-AATTCTGC_S7_L002_R2_001.fastq.gz 4638710089 FASTQ R2_L002 unaligned CPTAC3 583bf751-7c4c-449e-b192-7216796ab09b 3d6f0e92ef1fef8a12ae758dbcca0d99 { 'aliquot_tag': 'ALQ_cab54c75', 'gdc_sample_type': 'Primary Tumor' } +C3N-02971.RNA-Seq.genomic.T.hg38 C3N-02971 PDA RNA-Seq tumor CPT0185920010 1b91ef76-87e5-4177-9040-3af94f5bf43f.rna_seq.genomic.gdc_realn.bam 10627923723 BAM genomic harmonized CPTAC3 731788f7-224d-463e-9c98-dc39ebc5222e c848697374921a4a27e6bb2789d5f0d7 { 'aliquot_tag': 'ALQ_cab54c75', 'gdc_sample_type': 'Primary Tumor' } +C3N-02971.RNA-Seq.R1_L002.T C3N-02971 PDA RNA-Seq tumor CPT0185920010 190614_UNC32-K00270_0182_BH7777BBXY_GTTCCAAT-AATTCTGC_S7_L002_R1_001.fastq.gz 4121970006 FASTQ R1_L002 unaligned CPTAC3 f8b3b37d-3f83-4bd1-be99-9f1d32051fd2 280aaf28980c838a861b74d7b371a4ee { 'aliquot_tag': 'ALQ_cab54c75', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02971.RNA-Seq.R2_L002.T C3N-02971 PDA RNA-Seq tumor CPT0185920010 190614_UNC32-K00270_0182_BH7777BBXY_GTTCCAAT-AATTCTGC_S7_L002_R2_001.fastq.gz 4638710089 FASTQ R2_L002 unaligned CPTAC3 583bf751-7c4c-449e-b192-7216796ab09b 3d6f0e92ef1fef8a12ae758dbcca0d99 { 'aliquot_tag': 'ALQ_cab54c75', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-02971.RNA-Seq.transcriptome.T.hg38 C3N-02971 PDA RNA-Seq tumor CPT0185920010 1b91ef76-87e5-4177-9040-3af94f5bf43f.rna_seq.transcriptome.gdc_realn.bam 9981291329 BAM transcriptome harmonized CPTAC3 06af9ac7-5b55-4633-b73c-454b038d596a c27b85a1e4d0c2c83c77326ba565e36d { 'aliquot_tag': 'ALQ_cab54c75', 'gdc_sample_type': 'Primary Tumor' } C3N-02971.WGS.N C3N-02971 PDA WGS blood_normal CPT0187270002 CPT0187270002.WholeGenome.RP-1303.bam 63316143273 BAM aligned CPTAC3 b52ac77b-1227-4e08-bb8c-9abe69061a43 322650965121f8b62a0574af04c27ebe { 'aliquot_tag': 'ALQ_8187282', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02971.WGS.N.hg38 C3N-02971 PDA WGS blood_normal CPT0187270002 fd578434-4744-4277-b26d-75012c4a5918_wgs_gdc_realn.bam 92449047591 BAM harmonized CPTAC3 e79b4170-bdaf-40b0-9ec4-c9253ab925d0 1289704ccfa84deafc12ab108f6e1d6a { 'aliquot_tag': 'ALQ_8187282', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33571,13 +35813,16 @@ C3N-02972.MethArray.Green.T C3N-02972 UCEC Methylation Array tumor CPT0159220011 C3N-02972.MethArray.Red.T C3N-02972 UCEC Methylation Array tumor CPT0159220011 203561450103_R02C01_Red.idat 13676216 IDAT Red NA CPTAC3 b12d4fb2-a33a-4d60-bac2-e01a6320a06a 895227438e0c264353ab8ab53d933109 { 'aliquot_tag': 'ALQ_8bd0f385', 'gdc_sample_type': 'Primary Tumor' } C3N-02972.miRNA-Seq.T C3N-02972 UCEC miRNA-Seq tumor CPT0159220014 190508_UNC31-K00269_0215_BH7FYKBBXY_ATCACG_S1_L001_R1_001.unaln.bam 251959666 BAM unaligned CPTAC3 6cd96684-43e2-4ca2-be89-763fa9e955a6 37040a1be8073bfe74d47362e8d0585c { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor' } C3N-02972.miRNA-Seq.T.hg38 C3N-02972 UCEC miRNA-Seq tumor CPT0159220014 ab03df7e-c232-4c3b-8e33-9730a40d6c45_mirnaseq_gdc_realn.bam 282997263 BAM harmonized CPTAC3 abd52b5b-f5fa-40fb-9387-dca8a0a9cf9c 64d08b4ac4b4b076269d5fbec467e328 { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02972.RNA-Seq.chimeric.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 b3c939ab-6f7a-4102-9d9b-7d62e21733f4.rna_seq.chimeric.gdc_realn.bam 39570707 BAM chimeric harmonized CPTAC3 05062bdd-fd7c-4d5e-a451-7b8c3b47a466 78dd4d999e94f4343bfcac56aa24a216 { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02972.RNA-Seq.genomic.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 b3c939ab-6f7a-4102-9d9b-7d62e21733f4.rna_seq.genomic.gdc_realn.bam 9042566708 BAM genomic harmonized CPTAC3 1e213fc5-0a9b-408d-8f00-dc881ffd824e ba10068cdfb10aeee25e500c3f17a5b2 { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02972.RNA-Seq.R1_L004.T C3N-02972 UCEC RNA-Seq tumor CPT0159220014 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGCGGTT-AGCGCTAG_S11_L004_R1_001.fastq.gz 4357805183 FASTQ R1_L004 unaligned CPTAC3 3c0284c8-93df-4718-a80f-0a9d7beb2895 79771fbfad83a8c4fa8b4b529317a000 { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02972.RNA-Seq.R1_.T C3N-02972 UCEC RNA-Seq tumor CPT0159270001 20210729_P3_A8_WB7988-Plate3_S8_R1_001.fastq.gz 2734251106 FASTQ R1_ unaligned CPTAC3 9dfac3d7-41d7-495b-9ca5-11e7f7593ad1 9af06822fa5cb43c4f307f11b3c5667b { 'aliquot_tag': 'ALQ_5a2b4db4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02972.RNA-Seq.R2_L004.T C3N-02972 UCEC RNA-Seq tumor CPT0159220014 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGCGGTT-AGCGCTAG_S11_L004_R2_001.fastq.gz 4900497558 FASTQ R2_L004 unaligned CPTAC3 2da76d66-af60-45f8-8039-9d85d4ffbf85 8996dca99ac09d3ffc8d91ba64850938 { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02972.RNA-Seq.R2_.T C3N-02972 UCEC RNA-Seq tumor CPT0159270001 20210729_P3_A8_WB7988-Plate3_S8_R2_001.fastq.gz 2992165707 FASTQ R2_ unaligned CPTAC3 01d552fa-f768-4c0b-b91d-77d2c82cc5c8 0ff50325c74804f5b8cc12b2895ca548 { 'aliquot_tag': 'ALQ_5a2b4db4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02972.RNA-Seq.transcriptome.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 b3c939ab-6f7a-4102-9d9b-7d62e21733f4.rna_seq.transcriptome.gdc_realn.bam 10356871761 BAM transcriptome harmonized CPTAC3 9888ef99-f274-4a6a-bf41-36c4a8d40663 a4751e5f75f946a5b343c2c1155a6a7a { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02972.RNA-Seq.chimeric.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 95cb59b1-efd8-4bbb-a848-e8664f66213a.rna_seq.chimeric.gdc_realn.bam 39563596 BAM chimeric harmonized CPTAC3 8447a6e8-a260-4bc0-8020-15340754048d 9057549d476f1840c19de11c322e163d { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02972.RNA-Seq.chimeric.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159270001 c88842b3-ad22-4ed2-9bbb-8f9f06c4b88d.rna_seq.chimeric.gdc_realn.bam 15282155 BAM chimeric harmonized CPTAC3 1e412579-4463-4c42-bd4e-7f8620ed273e ca42c311d2e745b7fb3c9448f59e28d3 { 'aliquot_tag': 'ALQ_5a2b4db4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02972.RNA-Seq.genomic.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 95cb59b1-efd8-4bbb-a848-e8664f66213a.rna_seq.genomic.gdc_realn.bam 9043830734 BAM genomic harmonized CPTAC3 c9dfd1cd-2d91-48bb-a73e-9a6b964cbe4e 4447516d14f1b0e8cc5f1c45b33bd2c6 { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02972.RNA-Seq.genomic.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159270001 c88842b3-ad22-4ed2-9bbb-8f9f06c4b88d.rna_seq.genomic.gdc_realn.bam 4850090298 BAM genomic harmonized CPTAC3 b25cac48-7bf7-4d5b-9a6f-be0ddb185fbe 76825c7ddc4455fe3b9767f32ad0c562 { 'aliquot_tag': 'ALQ_5a2b4db4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02972.RNA-Seq.R1_L004.T C3N-02972 UCEC RNA-Seq tumor CPT0159220014 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGCGGTT-AGCGCTAG_S11_L004_R1_001.fastq.gz 4357805183 FASTQ R1_L004 unaligned CPTAC3 3c0284c8-93df-4718-a80f-0a9d7beb2895 79771fbfad83a8c4fa8b4b529317a000 { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02972.RNA-Seq.R2_L004.T C3N-02972 UCEC RNA-Seq tumor CPT0159220014 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGCGGTT-AGCGCTAG_S11_L004_R2_001.fastq.gz 4900497558 FASTQ R2_L004 unaligned CPTAC3 2da76d66-af60-45f8-8039-9d85d4ffbf85 8996dca99ac09d3ffc8d91ba64850938 { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02972.RNA-Seq.T C3N-02972 UCEC RNA-Seq tumor CPT0159270001 20210729_P3_A8_WB7988-Plate3_S8_R1_001.fastq.gz 2734251106 FASTQ unaligned CPTAC3 9dfac3d7-41d7-495b-9ca5-11e7f7593ad1 9af06822fa5cb43c4f307f11b3c5667b +C3N-02972.RNA-Seq.T C3N-02972 UCEC RNA-Seq tumor CPT0159270001 20210729_P3_A8_WB7988-Plate3_S8_R2_001.fastq.gz 2992165707 FASTQ unaligned CPTAC3 01d552fa-f768-4c0b-b91d-77d2c82cc5c8 0ff50325c74804f5b8cc12b2895ca548 +C3N-02972.RNA-Seq.transcriptome.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159220014 95cb59b1-efd8-4bbb-a848-e8664f66213a.rna_seq.transcriptome.gdc_realn.bam 11846621868 BAM transcriptome harmonized CPTAC3 3d83365e-cfc2-448d-95c7-d9bac62bec16 fd07aff2679d500c76557b032d89e2d9 { 'aliquot_tag': 'ALQ_fbba070a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02972.RNA-Seq.transcriptome.T.hg38 C3N-02972 UCEC RNA-Seq tumor CPT0159270001 c88842b3-ad22-4ed2-9bbb-8f9f06c4b88d.rna_seq.transcriptome.gdc_realn.bam 3959662198 BAM transcriptome harmonized CPTAC3 223ba723-dce6-4bca-97c6-31f01760e7fd 71cc7fb1f20ba0cd98186c78daa2389f { 'aliquot_tag': 'ALQ_5a2b4db4', 'gdc_sample_type': 'Primary Tumor' } C3N-02972.WGS.N C3N-02972 UCEC WGS blood_normal CPT0159480002 CPT0159480002.WholeGenome.RP-1303.bam 60306456058 BAM aligned CPTAC3 49f85e07-8fa5-4cb9-9137-149b57e21c4a 64d6d7084d0b0ac43bb2f3a3c3bf69a1 { 'aliquot_tag': 'ALQ_972b68c2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02972.WGS.N.hg38 C3N-02972 UCEC WGS blood_normal CPT0159480002 5d44d14e-6172-48b0-b4a5-963730083704_wgs_gdc_realn.bam 88324870279 BAM harmonized CPTAC3 f54a437c-1ce6-470a-8665-a3b4a5a6c291 eb2b8b24c3af21dc3a37e3b0ab188f1a { 'aliquot_tag': 'ALQ_972b68c2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02972.WGS.T C3N-02972 UCEC WGS tumor CPT0159220011 CPT0159220011.WholeGenome.RP-1303.bam 73552112421 BAM aligned CPTAC3 374f5b1e-acaa-4ab9-b834-ce2f9b7cba39 b9c3f0e860f872ecf27d2353e5d1bea6 { 'aliquot_tag': 'ALQ_8bd0f385', 'gdc_sample_type': 'Primary Tumor' } @@ -33594,16 +35839,16 @@ C3N-02973.miRNA-Seq.A C3N-02973 LUAD miRNA-Seq tissue_normal CPT0158830009 19013 C3N-02973.miRNA-Seq.A.hg38 C3N-02973 LUAD miRNA-Seq tissue_normal CPT0158830009 fea59635-fc9b-48dd-a526-2d4e89b5dca2_mirnaseq_gdc_realn.bam 174713434 BAM harmonized CPTAC3 ca500532-98fe-467c-bd8c-055d2bf6650e c149af322bed1e4b83c27c3ee0c3c6a3 { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-02973.miRNA-Seq.T C3N-02973 LUAD miRNA-Seq tumor CPT0158800009 190130_UNC31-K00269_0188_BH2FGCBBXY_GACGAC_S41_L007_R1_001.unaln.bam 191567294 BAM unaligned CPTAC3 37fb9554-0da8-4110-ba32-39aff2523ae1 0a539a42e42daf6d66bf13bea703c760 { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor' } C3N-02973.miRNA-Seq.T.hg38 C3N-02973 LUAD miRNA-Seq tumor CPT0158800009 02d35332-5cb6-4910-b3b7-797585f1bd80_mirnaseq_gdc_realn.bam 211221195 BAM harmonized CPTAC3 7f4a72d1-7609-43d2-87c7-432b6a615b92 09ee7e07279c84bf19f74cf5c93ea0a6 { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor' } -C3N-02973.RNA-Seq.chimeric.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 2541799d-1f38-47e9-99d3-218d1bd0f2ff.rna_seq.chimeric.gdc_realn.bam 237886376 BAM chimeric harmonized CPTAC3 52dae8fe-d88c-4e0e-84bd-4bb50cf6d593 dd0ad9367e22001adf35a42277d43ea2 { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02973.RNA-Seq.chimeric.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 51186f2d-8894-4a97-9ab6-f92493084b99.rna_seq.chimeric.gdc_realn.bam 55946750 BAM chimeric harmonized CPTAC3 984064a0-2b9e-40bf-8593-eebf7c5ad1ae d4f9ab759af473db02055bd1272bca5b { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor' } -C3N-02973.RNA-Seq.genomic.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 2541799d-1f38-47e9-99d3-218d1bd0f2ff.rna_seq.genomic.gdc_realn.bam 6558777670 BAM genomic harmonized CPTAC3 b5716c9a-2985-40f9-8e5f-54426b98a0ed 837cf3b83eeb91483279513b101e094e { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02973.RNA-Seq.genomic.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 51186f2d-8894-4a97-9ab6-f92493084b99.rna_seq.genomic.gdc_realn.bam 10832859316 BAM genomic harmonized CPTAC3 f78eaab5-d808-4579-885a-8457afd91440 376554d7229a5cc0e563ae5ea310f95a { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor' } -C3N-02973.RNA-Seq.R1_L004.A C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L004_R1_001.fastq.gz 2757636572 FASTQ R1_L004 unaligned CPTAC3 f48b615f-ea3c-4346-af45-f59438d6dd33 c2d30faa852dc0814ae34388ef25eedd { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02973.RNA-Seq.R1_L004.T C3N-02973 LUAD RNA-Seq tumor CPT0158800009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L004_R1_001.fastq.gz 4812354130 FASTQ R1_L004 unaligned CPTAC3 b17cc448-3b71-4cc4-aa47-d20cad3f7f6b a9e92ea194b75e42cc8f9e4b937cf1e5 { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor' } -C3N-02973.RNA-Seq.R2_L004.A C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L004_R2_001.fastq.gz 2988808092 FASTQ R2_L004 unaligned CPTAC3 15a908e8-10e4-4e68-bb6d-549d3ffc8419 c4ba0b2561c13764eebde3ff033d9e4c { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02973.RNA-Seq.R2_L004.T C3N-02973 LUAD RNA-Seq tumor CPT0158800009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L004_R2_001.fastq.gz 5409184919 FASTQ R2_L004 unaligned CPTAC3 fc89f663-b4ea-407d-8eef-502ce491751f 1c0748e7677b5e2e864f27cfd4e46806 { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor' } -C3N-02973.RNA-Seq.transcriptome.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 2541799d-1f38-47e9-99d3-218d1bd0f2ff.rna_seq.transcriptome.gdc_realn.bam 6103729880 BAM transcriptome harmonized CPTAC3 47b7f92a-9bcc-4458-88d3-110227f19270 d284853fdeec9a4608e4be6387ba461b { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02973.RNA-Seq.transcriptome.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 51186f2d-8894-4a97-9ab6-f92493084b99.rna_seq.transcriptome.gdc_realn.bam 9283971242 BAM transcriptome harmonized CPTAC3 8a7e7492-b0a9-43eb-a56e-c132f7a7303f 64a018fcae66c63bdc05c18bae62181d { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor' } +C3N-02973.RNA-Seq.chimeric.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 281b64f9-39a2-44c8-a10d-7de36ffdeb8b.rna_seq.chimeric.gdc_realn.bam 237879140 BAM chimeric harmonized CPTAC3 8e9e916d-79bd-4876-ad93-63e5071c072e 9dca7d3e880c819036f485bc212aff52 { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02973.RNA-Seq.chimeric.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 4dfeaa93-3f0c-4dd4-8f28-ca5c065e60cd.rna_seq.chimeric.gdc_realn.bam 55937617 BAM chimeric harmonized CPTAC3 9df532b3-6283-46ad-97b0-6cafb83b9840 793633ea82c1d2ecef3ed1c58857f2ea { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor' } +C3N-02973.RNA-Seq.genomic.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 281b64f9-39a2-44c8-a10d-7de36ffdeb8b.rna_seq.genomic.gdc_realn.bam 6559969052 BAM genomic harmonized CPTAC3 63c2b415-9b7c-4d24-bee2-18e044f6e3fe efd87186c942390d28310f54afe41774 { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02973.RNA-Seq.genomic.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 4dfeaa93-3f0c-4dd4-8f28-ca5c065e60cd.rna_seq.genomic.gdc_realn.bam 10834040745 BAM genomic harmonized CPTAC3 1883ceb5-dba8-4fe3-acac-d3cd60000694 66d7d82944e70cbd6615aea50cf724a6 { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor' } +C3N-02973.RNA-Seq.R1_L004.A C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L004_R1_001.fastq.gz 2757636572 FASTQ R1_L004 unaligned CPTAC3 f48b615f-ea3c-4346-af45-f59438d6dd33 c2d30faa852dc0814ae34388ef25eedd { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-02973.RNA-Seq.R1_L004.T C3N-02973 LUAD RNA-Seq tumor CPT0158800009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L004_R1_001.fastq.gz 4812354130 FASTQ R1_L004 unaligned CPTAC3 b17cc448-3b71-4cc4-aa47-d20cad3f7f6b a9e92ea194b75e42cc8f9e4b937cf1e5 { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02973.RNA-Seq.R2_L004.A C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 190219_UNC31-K00269_0194_AH3V53BBXY_GATCAG_S3_L004_R2_001.fastq.gz 2988808092 FASTQ R2_L004 unaligned CPTAC3 15a908e8-10e4-4e68-bb6d-549d3ffc8419 c4ba0b2561c13764eebde3ff033d9e4c { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-02973.RNA-Seq.R2_L004.T C3N-02973 LUAD RNA-Seq tumor CPT0158800009 190131_UNC32-K00270_0142_BH3LFYBBXY_GTCCGC_S16_L004_R2_001.fastq.gz 5409184919 FASTQ R2_L004 unaligned CPTAC3 fc89f663-b4ea-407d-8eef-502ce491751f 1c0748e7677b5e2e864f27cfd4e46806 { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02973.RNA-Seq.transcriptome.A.hg38 C3N-02973 LUAD RNA-Seq tissue_normal CPT0158830009 281b64f9-39a2-44c8-a10d-7de36ffdeb8b.rna_seq.transcriptome.gdc_realn.bam 6877571131 BAM transcriptome harmonized CPTAC3 a1cf8e21-b8d6-4d33-9215-625147f71549 29cdd7d1a5f576a0d7feffadc2f09d35 { 'aliquot_tag': 'ALQ_a69c4b94', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02973.RNA-Seq.transcriptome.T.hg38 C3N-02973 LUAD RNA-Seq tumor CPT0158800009 4dfeaa93-3f0c-4dd4-8f28-ca5c065e60cd.rna_seq.transcriptome.gdc_realn.bam 10499744693 BAM transcriptome harmonized CPTAC3 de4fd987-5ca5-4de2-87aa-2907e4b8f368 05ec2391c1f4afcd41a9cf0c3f026067 { 'aliquot_tag': 'ALQ_e13c3144', 'gdc_sample_type': 'Primary Tumor' } C3N-02973.WGS.N C3N-02973 LUAD WGS blood_normal CPT0159500002 CPT0159500002.WholeGenome.RP-1303.bam 54057109946 BAM aligned CPTAC3 ecf6c674-5e47-483f-b22e-f98966358e14 602e30b18208c617abc3f9f1d44e72ac { 'aliquot_tag': 'ALQ_6c07f0a6', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02973.WGS.N.hg38 C3N-02973 LUAD WGS blood_normal CPT0159500002 9ad39505-46ad-4e09-b88a-b18441670098_wgs_gdc_realn.bam 78887793882 BAM harmonized CPTAC3 16699946-b149-4b02-90f5-e09d98ba2ab8 78ffa1923d6317dfbd2dd9a21e6275ae { 'aliquot_tag': 'ALQ_6c07f0a6', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02973.WGS.T C3N-02973 LUAD WGS tumor CPT0158800006 CPT0158800006.WholeGenome.RP-1303.bam 121515535084 BAM aligned CPTAC3 e2c2f136-0a33-4533-913a-c931231e6680 99e202c36e843f101d6896cefbeed1e6 { 'aliquot_tag': 'ALQ_71832cd5', 'gdc_sample_type': 'Primary Tumor' } @@ -33616,13 +35861,16 @@ C3N-02973.WXS.T C3N-02973 LUAD WXS tumor CPT0158800006 CPT0158800006.WholeExome. C3N-02973.WXS.T.hg38 C3N-02973 LUAD WXS tumor CPT0158800006 7ba6255e-6ab4-40f8-b3a0-944a48972120_wxs_gdc_realn.bam 29708983040 BAM harmonized CPTAC3 dc34c68b-4cf3-4775-9153-9e0d4395d4e5 151b3299ea8168cb2d715462ab06843c { 'aliquot_tag': 'ALQ_71832cd5', 'gdc_sample_type': 'Primary Tumor' } C3N-02976.MethArray.Green.T C3N-02976 UCEC Methylation Array tumor CPT0188030006 203561450048_R07C01_Grn.idat 13676221 IDAT Green NA CPTAC3 eb9c350c-5031-4d6e-8799-177dfdcee9dd 3eddf0173c529803a3b5411cdc680a3f { 'aliquot_tag': 'ALQ_4175c1b9', 'gdc_sample_type': 'Primary Tumor' } C3N-02976.MethArray.Red.T C3N-02976 UCEC Methylation Array tumor CPT0188030006 203561450048_R07C01_Red.idat 13676221 IDAT Red NA CPTAC3 c8fefe7e-4008-4f88-bea6-8208df89178e 1b934544676aba2717f16b49f67e44db { 'aliquot_tag': 'ALQ_4175c1b9', 'gdc_sample_type': 'Primary Tumor' } -C3N-02976.RNA-Seq.chimeric.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 af1c365c-f527-4c48-b71e-d90f0f30d221.rna_seq.chimeric.gdc_realn.bam 38829891 BAM chimeric harmonized CPTAC3 c0c38f3a-37b1-4f5b-a282-e3ad7fe4a326 408bf0bd3de8a0f80822fc7c75377d8e { 'aliquot_tag': 'ALQ_d1cadc28', 'gdc_sample_type': 'Primary Tumor' } -C3N-02976.RNA-Seq.genomic.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 af1c365c-f527-4c48-b71e-d90f0f30d221.rna_seq.genomic.gdc_realn.bam 9602912826 BAM genomic harmonized CPTAC3 ac1b3186-7b7b-417a-9879-1f84c094e554 134a5c5e57718fefe6b3c326a1a14ec5 { 'aliquot_tag': 'ALQ_d1cadc28', 'gdc_sample_type': 'Primary Tumor' } -C3N-02976.RNA-Seq.R1_L005.T C3N-02976 UCEC RNA-Seq tumor CPT0188030009 190702_UNC32-K00270_0188_BH7CLJBBXY_TTACAGGA-TGACAAGC_S17_L005_R1_001.fastq.gz 4562895528 FASTQ R1_L005 unaligned CPTAC3 cd351f85-c471-4600-b1bf-c498f24a1528 74a16eaeb3aa01fc980d55be6fde923e { 'aliquot_tag': 'ALQ_d1cadc28', 'gdc_sample_type': 'Primary Tumor' } -C3N-02976.RNA-Seq.R1_.T C3N-02976 UCEC RNA-Seq tumor CPT0353450001 20210729_P3_G6_WB7988-Plate3_S78_R1_001.fastq.gz 13891695391 FASTQ R1_ unaligned CPTAC3 e5206777-7329-4404-88bd-b482451fd621 3d82c30d7143c78a61db29ac33555220 { 'aliquot_tag': 'ALQ_7c348a01', 'gdc_sample_type': 'Primary Tumor' } -C3N-02976.RNA-Seq.R2_L005.T C3N-02976 UCEC RNA-Seq tumor CPT0188030009 190702_UNC32-K00270_0188_BH7CLJBBXY_TTACAGGA-TGACAAGC_S17_L005_R2_001.fastq.gz 5066100927 FASTQ R2_L005 unaligned CPTAC3 9b7999a6-39fe-4bd6-9ae0-99bb2ba7f7a7 a9749508f457d7d92e46f1d3953c7fe5 { 'aliquot_tag': 'ALQ_d1cadc28', 'gdc_sample_type': 'Primary Tumor' } -C3N-02976.RNA-Seq.R2_.T C3N-02976 UCEC RNA-Seq tumor CPT0353450001 20210729_P3_G6_WB7988-Plate3_S78_R2_001.fastq.gz 14324623373 FASTQ R2_ unaligned CPTAC3 ed50c687-62c5-428a-89e2-6e9a516c6792 8e9ded5d7c5f87ccb4b4d3359aafb72b { 'aliquot_tag': 'ALQ_7c348a01', 'gdc_sample_type': 'Primary Tumor' } -C3N-02976.RNA-Seq.transcriptome.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 af1c365c-f527-4c48-b71e-d90f0f30d221.rna_seq.transcriptome.gdc_realn.bam 10678440535 BAM transcriptome harmonized CPTAC3 f376991e-c4ed-42db-bfb4-c1f37f4196fc 23d02f0c6c18bc4e4bb5342c0d85af12 { 'aliquot_tag': 'ALQ_d1cadc28', 'gdc_sample_type': 'Primary Tumor' } +C3N-02976.RNA-Seq.chimeric.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 6f286f26-ecca-4f77-b99d-1ab767206e81.rna_seq.chimeric.gdc_realn.bam 38813532 BAM chimeric harmonized CPTAC3 5fbffeb4-4b0b-4c22-b964-37e0d3dc9977 3e9dc1931d862150d21d2c54a187f843 { 'aliquot_tag': 'ALQ_d1cadc28', 'gdc_sample_type': 'Primary Tumor' } +C3N-02976.RNA-Seq.chimeric.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0353450001 f5321f13-200c-4271-8ede-f11f362e1e35.rna_seq.chimeric.gdc_realn.bam 436249706 BAM chimeric harmonized CPTAC3 67598aea-9575-4163-87a0-b007fa9a987a c42b95b9fceb2e534c8adea97d20a448 { 'aliquot_tag': 'ALQ_7c348a01', 'gdc_sample_type': 'Primary Tumor' } +C3N-02976.RNA-Seq.genomic.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 6f286f26-ecca-4f77-b99d-1ab767206e81.rna_seq.genomic.gdc_realn.bam 9604229848 BAM genomic harmonized CPTAC3 af117790-256b-43f3-bb98-a250d0c97119 a586f5de20b55de484f2eda8b2ac6d40 { 'aliquot_tag': 'ALQ_d1cadc28', 'gdc_sample_type': 'Primary Tumor' } +C3N-02976.RNA-Seq.genomic.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0353450001 f5321f13-200c-4271-8ede-f11f362e1e35.rna_seq.genomic.gdc_realn.bam 20409457367 BAM genomic harmonized CPTAC3 0ad318d9-d110-4419-b9ab-ae4fa7ae3b54 7a70e57857c649e1a44bd9b73ab83544 { 'aliquot_tag': 'ALQ_7c348a01', 'gdc_sample_type': 'Primary Tumor' } +C3N-02976.RNA-Seq.R1_L005.T C3N-02976 UCEC RNA-Seq tumor CPT0188030009 190702_UNC32-K00270_0188_BH7CLJBBXY_TTACAGGA-TGACAAGC_S17_L005_R1_001.fastq.gz 4562895528 FASTQ R1_L005 unaligned CPTAC3 cd351f85-c471-4600-b1bf-c498f24a1528 74a16eaeb3aa01fc980d55be6fde923e { 'aliquot_tag': 'ALQ_d1cadc28', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02976.RNA-Seq.R2_L005.T C3N-02976 UCEC RNA-Seq tumor CPT0188030009 190702_UNC32-K00270_0188_BH7CLJBBXY_TTACAGGA-TGACAAGC_S17_L005_R2_001.fastq.gz 5066100927 FASTQ R2_L005 unaligned CPTAC3 9b7999a6-39fe-4bd6-9ae0-99bb2ba7f7a7 a9749508f457d7d92e46f1d3953c7fe5 { 'aliquot_tag': 'ALQ_d1cadc28', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02976.RNA-Seq.T C3N-02976 UCEC RNA-Seq tumor CPT0353450001 20210729_P3_G6_WB7988-Plate3_S78_R1_001.fastq.gz 13891695391 FASTQ unaligned CPTAC3 e5206777-7329-4404-88bd-b482451fd621 3d82c30d7143c78a61db29ac33555220 +C3N-02976.RNA-Seq.T C3N-02976 UCEC RNA-Seq tumor CPT0353450001 20210729_P3_G6_WB7988-Plate3_S78_R2_001.fastq.gz 14324623373 FASTQ unaligned CPTAC3 ed50c687-62c5-428a-89e2-6e9a516c6792 8e9ded5d7c5f87ccb4b4d3359aafb72b +C3N-02976.RNA-Seq.transcriptome.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0188030009 6f286f26-ecca-4f77-b99d-1ab767206e81.rna_seq.transcriptome.gdc_realn.bam 12116338912 BAM transcriptome harmonized CPTAC3 b02f331a-35b8-4983-bb12-d00b703fcda7 3b09438e82a0a0eebc0b9cb364d74b28 { 'aliquot_tag': 'ALQ_d1cadc28', 'gdc_sample_type': 'Primary Tumor' } +C3N-02976.RNA-Seq.transcriptome.T.hg38 C3N-02976 UCEC RNA-Seq tumor CPT0353450001 f5321f13-200c-4271-8ede-f11f362e1e35.rna_seq.transcriptome.gdc_realn.bam 10735699493 BAM transcriptome harmonized CPTAC3 ad832e7c-a6fa-41db-ab3d-c0d98e22fb08 e74f08ad452bd7807276e93c989a8616 { 'aliquot_tag': 'ALQ_7c348a01', 'gdc_sample_type': 'Primary Tumor' } C3N-02976.WGS.N C3N-02976 UCEC WGS blood_normal CPT0188090002 CPT0188090002.WholeGenome.RP-1303.bam 63445121214 BAM aligned CPTAC3 da4f69b4-2f83-4d92-bff5-485b9758795e 82a124cf6eb6ab54a44e2996ba577cfa { 'aliquot_tag': 'ALQ_ca81d01', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02976.WGS.N.hg38 C3N-02976 UCEC WGS blood_normal CPT0188090002 ac5b4160-c621-4774-9c85-773ea9a3cfb7_wgs_gdc_realn.bam 91032302379 BAM harmonized CPTAC3 323bdba9-d5dc-4645-a411-a89b97662c8c 9e31f353ade4ad35cef2cb63b5f32ba5 { 'aliquot_tag': 'ALQ_ca81d01', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02976.WGS.T C3N-02976 UCEC WGS tumor CPT0188030006 CPT0188030006.WholeGenome.RP-1303.bam 104793850021 BAM aligned CPTAC3 253723ca-dd15-4062-b3a0-e7a521a7d566 2f8f76c4c2da8302e271e27076929a61 { 'aliquot_tag': 'ALQ_4175c1b9', 'gdc_sample_type': 'Primary Tumor' } @@ -33635,13 +35883,16 @@ C3N-02978.MethArray.Green.T C3N-02978 UCEC Methylation Array tumor CPT0244470006 C3N-02978.MethArray.Red.T C3N-02978 UCEC Methylation Array tumor CPT0244470006 203561450041_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 d17a1a35-c55f-422c-9304-eaacc1073906 0c485e4d575aebc86362dedc6851ac64 { 'aliquot_tag': 'ALQ_86e66691', 'gdc_sample_type': 'Primary Tumor' } C3N-02978.miRNA-Seq.T C3N-02978 UCEC miRNA-Seq tumor CPT0244470009 190508_UNC31-K00269_0215_BH7FYKBBXY_TTAGGC_S3_L001_R1_001.unaln.bam 206913870 BAM unaligned CPTAC3 46a40edd-b9c9-46e3-8bbe-206a76693869 425206dfe7722c7e177d0c07a9276131 { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor' } C3N-02978.miRNA-Seq.T.hg38 C3N-02978 UCEC miRNA-Seq tumor CPT0244470009 04bd8ab7-4b40-44b5-a699-c3b02768a528_mirnaseq_gdc_realn.bam 236421336 BAM harmonized CPTAC3 41503d04-661c-4940-8cda-3af73738a994 3488a35bf4b965e9be2822e132257e88 { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02978.RNA-Seq.chimeric.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 b6f8082e-e687-4eb5-8185-956e0c16ce50.rna_seq.chimeric.gdc_realn.bam 27241086 BAM chimeric harmonized CPTAC3 3d8479dd-0b71-4250-a8e1-73de47916328 a0db30218a91d3d27b6af7bba63aabcf { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02978.RNA-Seq.genomic.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 b6f8082e-e687-4eb5-8185-956e0c16ce50.rna_seq.genomic.gdc_realn.bam 7402798693 BAM genomic harmonized CPTAC3 476ba81a-3842-482d-b19a-079f0ae4c981 4777d26f2742fbcf734fa052b383f295 { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02978.RNA-Seq.R1_L004.T C3N-02978 UCEC RNA-Seq tumor CPT0244470009 190426_UNC32-K00270_0167_AH7CK7BBXY_GGACTTGG-CGCAGACG_S13_L004_R1_001.fastq.gz 3552227283 FASTQ R1_L004 unaligned CPTAC3 a94dd2fe-40de-47bb-a980-49aaa4d2d3b6 855472d39d21e686b742418a4dbaa85c { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02978.RNA-Seq.R1_.T C3N-02978 UCEC RNA-Seq tumor CPT0353480001 20210714_P1_G8_WB7988_plate1_S79_R1_001.fastq.gz 6920812759 FASTQ R1_ unaligned CPTAC3 06316754-64be-4277-a073-6f830c61e9c6 7a3a8d34e45f8a2de1b723f468449625 { 'aliquot_tag': 'ALQ_84a44eb0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02978.RNA-Seq.R2_L004.T C3N-02978 UCEC RNA-Seq tumor CPT0244470009 190426_UNC32-K00270_0167_AH7CK7BBXY_GGACTTGG-CGCAGACG_S13_L004_R2_001.fastq.gz 3992956567 FASTQ R2_L004 unaligned CPTAC3 2041c9b6-0641-48f1-8fc5-1e594031e2d8 c1c1caa3c060ae3a04146d3e0573e3fa { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor' } -C3N-02978.RNA-Seq.R2_.T C3N-02978 UCEC RNA-Seq tumor CPT0353480001 20210714_P1_G8_WB7988_plate1_S79_R2_001.fastq.gz 7160560179 FASTQ R2_ unaligned CPTAC3 c20409fc-f0e4-47f7-8a8f-55600a2047b9 544de996c2172be767c77dbea346c15b { 'aliquot_tag': 'ALQ_84a44eb0', 'gdc_sample_type': 'Primary Tumor' } -C3N-02978.RNA-Seq.transcriptome.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 b6f8082e-e687-4eb5-8185-956e0c16ce50.rna_seq.transcriptome.gdc_realn.bam 10487439318 BAM transcriptome harmonized CPTAC3 ffa96edd-329a-4418-9e74-1a78f6467a59 c42d099e6725327946c189f805a5d43d { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02978.RNA-Seq.chimeric.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 ed91bca2-e541-4c09-83c6-23984fbf4f6b.rna_seq.chimeric.gdc_realn.bam 27223633 BAM chimeric harmonized CPTAC3 64e93287-a219-4158-8f1e-825e696af4bf 4dc245d41793a8ce3bff386c854967f0 { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02978.RNA-Seq.chimeric.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0353480001 96756a8f-85fd-4558-be4a-838dca2f8b41.rna_seq.chimeric.gdc_realn.bam 231891398 BAM chimeric harmonized CPTAC3 8d6bd61e-25af-41a1-8252-217a1d3cc2eb 066e2b7f67a34414737ece2bcbb89af2 { 'aliquot_tag': 'ALQ_84a44eb0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02978.RNA-Seq.genomic.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 ed91bca2-e541-4c09-83c6-23984fbf4f6b.rna_seq.genomic.gdc_realn.bam 7403973356 BAM genomic harmonized CPTAC3 490446b7-81d8-4b1e-bf7a-5ffd2e575072 84c1caa13965e3a7e1b90f351dda591f { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02978.RNA-Seq.genomic.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0353480001 96756a8f-85fd-4558-be4a-838dca2f8b41.rna_seq.genomic.gdc_realn.bam 11128514756 BAM genomic harmonized CPTAC3 49f6af4d-dbcb-4677-8f8c-3da559f063cb 5a14865d0e07a9e8a8a8cc2133183f0d { 'aliquot_tag': 'ALQ_84a44eb0', 'gdc_sample_type': 'Primary Tumor' } +C3N-02978.RNA-Seq.R1_L004.T C3N-02978 UCEC RNA-Seq tumor CPT0244470009 190426_UNC32-K00270_0167_AH7CK7BBXY_GGACTTGG-CGCAGACG_S13_L004_R1_001.fastq.gz 3552227283 FASTQ R1_L004 unaligned CPTAC3 a94dd2fe-40de-47bb-a980-49aaa4d2d3b6 855472d39d21e686b742418a4dbaa85c { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-02978.RNA-Seq.R2_L004.T C3N-02978 UCEC RNA-Seq tumor CPT0244470009 190426_UNC32-K00270_0167_AH7CK7BBXY_GGACTTGG-CGCAGACG_S13_L004_R2_001.fastq.gz 3992956567 FASTQ R2_L004 unaligned CPTAC3 2041c9b6-0641-48f1-8fc5-1e594031e2d8 c1c1caa3c060ae3a04146d3e0573e3fa { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-02978.RNA-Seq.T C3N-02978 UCEC RNA-Seq tumor CPT0353480001 20210714_P1_G8_WB7988_plate1_S79_R1_001.fastq.gz 6920812759 FASTQ unaligned CPTAC3 06316754-64be-4277-a073-6f830c61e9c6 7a3a8d34e45f8a2de1b723f468449625 +C3N-02978.RNA-Seq.T C3N-02978 UCEC RNA-Seq tumor CPT0353480001 20210714_P1_G8_WB7988_plate1_S79_R2_001.fastq.gz 7160560179 FASTQ unaligned CPTAC3 c20409fc-f0e4-47f7-8a8f-55600a2047b9 544de996c2172be767c77dbea346c15b +C3N-02978.RNA-Seq.transcriptome.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0244470009 ed91bca2-e541-4c09-83c6-23984fbf4f6b.rna_seq.transcriptome.gdc_realn.bam 12047110662 BAM transcriptome harmonized CPTAC3 b173d6a1-f012-4c9e-a6cd-efd821714e87 e3a9cf1fa303de1e2c0a881320c56edb { 'aliquot_tag': 'ALQ_16597b00', 'gdc_sample_type': 'Primary Tumor' } +C3N-02978.RNA-Seq.transcriptome.T.hg38 C3N-02978 UCEC RNA-Seq tumor CPT0353480001 96756a8f-85fd-4558-be4a-838dca2f8b41.rna_seq.transcriptome.gdc_realn.bam 5239012890 BAM transcriptome harmonized CPTAC3 e3e92b94-430f-40a0-b6bd-adf4b6b6bbee f3e172a47267a55c6444ef0ce521d024 { 'aliquot_tag': 'ALQ_84a44eb0', 'gdc_sample_type': 'Primary Tumor' } C3N-02978.WGS.N C3N-02978 UCEC WGS blood_normal CPT0244490002 CPT0244490002.WholeGenome.RP-1303.bam 69114889782 BAM aligned CPTAC3 33c9d10d-90c2-4cae-8a5b-b13cf5127ea0 f2325c4bfcf0a9417fa282982e066f5b { 'aliquot_tag': 'ALQ_3ebb1ce9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02978.WGS.N.hg38 C3N-02978 UCEC WGS blood_normal CPT0244490002 c4fa174e-cde5-4659-9d2e-58ed1b380327_wgs_gdc_realn.bam 100831158639 BAM harmonized CPTAC3 daa49700-ac1a-42a5-914f-a8e933761ad8 2581293bf8ddf90b539e5d5a3c01a98b { 'aliquot_tag': 'ALQ_3ebb1ce9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02978.WGS.T C3N-02978 UCEC WGS tumor CPT0244470006 CPT0244470006.WholeGenome.RP-1303.bam 85381652373 BAM aligned CPTAC3 4e289fa4-d13f-41d7-b689-d7f6b9b17b57 4f1245af06136fe98da669781638a3ce { 'aliquot_tag': 'ALQ_86e66691', 'gdc_sample_type': 'Primary Tumor' } @@ -33654,13 +35905,16 @@ C3N-02979.MethArray.Green.T C3N-02979 UCEC Methylation Array tumor CPT0188100007 C3N-02979.MethArray.Red.T C3N-02979 UCEC Methylation Array tumor CPT0188100007 203561620050_R05C01_Red.idat 13676221 IDAT Red NA CPTAC3 66171c33-a6a1-44e2-8e30-b5da7fd21527 168e884c4be593b2d7aa5ff3e439371e { 'aliquot_tag': 'ALQ_ba8e585a', 'gdc_sample_type': 'Primary Tumor' } C3N-02979.miRNA-Seq.T C3N-02979 UCEC miRNA-Seq tumor CPT0188100010 190508_UNC31-K00269_0215_BH7FYKBBXY_GTTTCG_S21_L003_R1_001.unaln.bam 129258275 BAM unaligned CPTAC3 4d5892d2-6e87-43c3-b97d-83aed7d481c0 d59d1a751f6e41b3fd77822964dae1ac { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor' } C3N-02979.miRNA-Seq.T.hg38 C3N-02979 UCEC miRNA-Seq tumor CPT0188100010 108f2af1-af04-4d55-9877-853c7e0c0fb2_mirnaseq_gdc_realn.bam 146879714 BAM harmonized CPTAC3 8930c62f-a0ef-44fb-b9d1-de2ea0358cd8 c0ba73ffff97897bbbce5a1db053519f { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02979.RNA-Seq.chimeric.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 87f9884b-8c0c-46b5-a9c5-38fb6b3ec7a1.rna_seq.chimeric.gdc_realn.bam 45077835 BAM chimeric harmonized CPTAC3 51e80081-932f-4654-a56f-c7636313d524 23568f501ed3829a4e63cfa97e591e59 { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02979.RNA-Seq.genomic.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 87f9884b-8c0c-46b5-a9c5-38fb6b3ec7a1.rna_seq.genomic.gdc_realn.bam 7891359658 BAM genomic harmonized CPTAC3 bf227854-81b1-4f3d-b06c-d99181393967 7de27be7b0108b1e1625d4bcdd874956 { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02979.RNA-Seq.R1_L005.T C3N-02979 UCEC RNA-Seq tumor CPT0188100010 190523_UNC32-K00270_0176_BH7CW7BBXY_GCCACAGG-CATGCCAT_S19_L005_R1_001.fastq.gz 3742141416 FASTQ R1_L005 unaligned CPTAC3 264d55c9-cbb3-4385-b638-960b5669b4d4 32492400738a9f48ad9432c93abfd0e2 { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02979.RNA-Seq.R1_.T C3N-02979 UCEC RNA-Seq tumor CPT0353490001 20210729_P3_E2_WB7988-Plate3_S50_R1_001.fastq.gz 6946570471 FASTQ R1_ unaligned CPTAC3 228e391f-834d-46c4-aa06-d4676d90ff55 45a95e15270e38ef0c45f2b04ba94bf6 { 'aliquot_tag': 'ALQ_b9c46700', 'gdc_sample_type': 'Primary Tumor' } -C3N-02979.RNA-Seq.R2_L005.T C3N-02979 UCEC RNA-Seq tumor CPT0188100010 190523_UNC32-K00270_0176_BH7CW7BBXY_GCCACAGG-CATGCCAT_S19_L005_R2_001.fastq.gz 4278918205 FASTQ R2_L005 unaligned CPTAC3 fc0ac368-29d4-46b9-a358-9eedd311e503 915a099830b77e0f5f68690246f54785 { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor' } -C3N-02979.RNA-Seq.R2_.T C3N-02979 UCEC RNA-Seq tumor CPT0353490001 20210729_P3_E2_WB7988-Plate3_S50_R2_001.fastq.gz 7198005683 FASTQ R2_ unaligned CPTAC3 50f2e324-fc59-4f61-a6bb-fcd96a9e4f91 3f4e05ea21122dde012951d068f71a8f { 'aliquot_tag': 'ALQ_b9c46700', 'gdc_sample_type': 'Primary Tumor' } -C3N-02979.RNA-Seq.transcriptome.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 87f9884b-8c0c-46b5-a9c5-38fb6b3ec7a1.rna_seq.transcriptome.gdc_realn.bam 8954175100 BAM transcriptome harmonized CPTAC3 b771b537-6d55-4c15-a409-c9b71c74218f 21f5964ff27b23d3e70ac1a3beb040d8 { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02979.RNA-Seq.chimeric.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 c01a7875-4de5-45f8-a7c5-84104c869eea.rna_seq.chimeric.gdc_realn.bam 45062566 BAM chimeric harmonized CPTAC3 49e93a4c-f568-4022-a380-a8c8cb723ac4 4bf8f6f5afff92f60e51b15a5fd43a59 { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02979.RNA-Seq.chimeric.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0353490001 69f190d2-f39f-4aee-9b40-166e77b23094.rna_seq.chimeric.gdc_realn.bam 178821108 BAM chimeric harmonized CPTAC3 4b0475cb-43c2-4bb6-8c3b-1272ccc9121b b3471f9e295df692d0cae8a55baf6cd2 { 'aliquot_tag': 'ALQ_b9c46700', 'gdc_sample_type': 'Primary Tumor' } +C3N-02979.RNA-Seq.genomic.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 c01a7875-4de5-45f8-a7c5-84104c869eea.rna_seq.genomic.gdc_realn.bam 7892799825 BAM genomic harmonized CPTAC3 95eb998f-f540-479f-bfd7-750a837aed69 1cf9673d7c6181f5443e443245a7e5d1 { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02979.RNA-Seq.genomic.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0353490001 69f190d2-f39f-4aee-9b40-166e77b23094.rna_seq.genomic.gdc_realn.bam 8599731049 BAM genomic harmonized CPTAC3 d0062090-8620-485b-8cec-70059ccd650e 7ca7b4ea004b7876ced6098bddd71b42 { 'aliquot_tag': 'ALQ_b9c46700', 'gdc_sample_type': 'Primary Tumor' } +C3N-02979.RNA-Seq.R1_L005.T C3N-02979 UCEC RNA-Seq tumor CPT0188100010 190523_UNC32-K00270_0176_BH7CW7BBXY_GCCACAGG-CATGCCAT_S19_L005_R1_001.fastq.gz 3742141416 FASTQ R1_L005 unaligned CPTAC3 264d55c9-cbb3-4385-b638-960b5669b4d4 32492400738a9f48ad9432c93abfd0e2 { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02979.RNA-Seq.R2_L005.T C3N-02979 UCEC RNA-Seq tumor CPT0188100010 190523_UNC32-K00270_0176_BH7CW7BBXY_GCCACAGG-CATGCCAT_S19_L005_R2_001.fastq.gz 4278918205 FASTQ R2_L005 unaligned CPTAC3 fc0ac368-29d4-46b9-a358-9eedd311e503 915a099830b77e0f5f68690246f54785 { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02979.RNA-Seq.T C3N-02979 UCEC RNA-Seq tumor CPT0353490001 20210729_P3_E2_WB7988-Plate3_S50_R1_001.fastq.gz 6946570471 FASTQ unaligned CPTAC3 228e391f-834d-46c4-aa06-d4676d90ff55 45a95e15270e38ef0c45f2b04ba94bf6 +C3N-02979.RNA-Seq.T C3N-02979 UCEC RNA-Seq tumor CPT0353490001 20210729_P3_E2_WB7988-Plate3_S50_R2_001.fastq.gz 7198005683 FASTQ unaligned CPTAC3 50f2e324-fc59-4f61-a6bb-fcd96a9e4f91 3f4e05ea21122dde012951d068f71a8f +C3N-02979.RNA-Seq.transcriptome.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0188100010 c01a7875-4de5-45f8-a7c5-84104c869eea.rna_seq.transcriptome.gdc_realn.bam 10372122157 BAM transcriptome harmonized CPTAC3 81dbd3b6-6b07-44df-afb3-0e5f5935ee6f 476acd35c1efefe6659e0df8ed4f0d68 { 'aliquot_tag': 'ALQ_3df1fcb8', 'gdc_sample_type': 'Primary Tumor' } +C3N-02979.RNA-Seq.transcriptome.T.hg38 C3N-02979 UCEC RNA-Seq tumor CPT0353490001 69f190d2-f39f-4aee-9b40-166e77b23094.rna_seq.transcriptome.gdc_realn.bam 5802091016 BAM transcriptome harmonized CPTAC3 bdd619e2-8e83-412c-a5ed-c4b80ac6ec1b ae31916e89a623ccdb4f3460094ef6ab { 'aliquot_tag': 'ALQ_b9c46700', 'gdc_sample_type': 'Primary Tumor' } C3N-02979.WGS.N C3N-02979 UCEC WGS blood_normal CPT0188120002 CPT0188120002.WholeGenome.RP-1303.bam 84174597332 BAM aligned CPTAC3 a9965c83-1b3d-49a9-988b-8281cd2f9de0 d1018dd1e42a203d68805627f929631f { 'aliquot_tag': 'ALQ_b024ffb5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02979.WGS.N.hg38 C3N-02979 UCEC WGS blood_normal CPT0188120002 89a78c3a-06b4-4949-ac86-9da3271336a6_wgs_gdc_realn.bam 124502640676 BAM harmonized CPTAC3 ece98cec-f6b5-466d-b310-89d2f58b1c04 cde44d4fba9146328bb141895f903fbf { 'aliquot_tag': 'ALQ_b024ffb5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02979.WGS.T C3N-02979 UCEC WGS tumor CPT0188100007 CPT0188100007.WholeGenome.RP-1303.bam 52705746495 BAM aligned CPTAC3 68f7b81e-7995-49bc-a059-851f18ba14d5 ccc18e4496c2899e7756ef112060aca5 { 'aliquot_tag': 'ALQ_ba8e585a', 'gdc_sample_type': 'Primary Tumor' } @@ -33673,13 +35927,16 @@ C3N-02994.MethArray.Green.T C3N-02994 UCEC Methylation Array tumor CPT0248000006 C3N-02994.MethArray.Red.T C3N-02994 UCEC Methylation Array tumor CPT0248000006 203561620064_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 a04dddda-c4d1-49c4-ab00-26103ab06613 afd79d5d5b2a83a0c97caa03311d13b2 { 'aliquot_tag': 'ALQ_68f792e3', 'gdc_sample_type': 'Primary Tumor' } C3N-02994.miRNA-Seq.T C3N-02994 UCEC miRNA-Seq tumor CPT0248000009 190508_UNC31-K00269_0215_BH7FYKBBXY_GATCAG_S9_L001_R1_001.unaln.bam 143642551 BAM unaligned CPTAC3 d3c55920-36ae-48cc-b4cb-b8e21c50384d 78bed0f60adc6c9395c4d6a9cc33de92 { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor' } C3N-02994.miRNA-Seq.T.hg38 C3N-02994 UCEC miRNA-Seq tumor CPT0248000009 cf841356-e0cc-4a71-a79d-e6c40871bd02_mirnaseq_gdc_realn.bam 166062289 BAM harmonized CPTAC3 9b01b34d-2113-47cc-9156-bdbd60e44eb2 054f4d757786917b74328f055f9084b4 { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor' } -C3N-02994.RNA-Seq.chimeric.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 c1e44b12-aee8-44fa-88ca-c2abc4012cbc.rna_seq.chimeric.gdc_realn.bam 31099584 BAM chimeric harmonized CPTAC3 fd786c4f-3ba0-47b3-b0c0-9fb273af26e4 c5536390bb6ec4020c9a1f24bd040cd4 { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor' } -C3N-02994.RNA-Seq.genomic.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 c1e44b12-aee8-44fa-88ca-c2abc4012cbc.rna_seq.genomic.gdc_realn.bam 7746727985 BAM genomic harmonized CPTAC3 02a00de2-73ad-48d5-909c-47a6181ee254 41b0032fdfd4525f93e4b0a9e22b6790 { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor' } -C3N-02994.RNA-Seq.R1_L005.T C3N-02994 UCEC RNA-Seq tumor CPT0248000009 190426_UNC32-K00270_0167_AH7CK7BBXY_AGTTCAGG-CCAACAGA_S15_L005_R1_001.fastq.gz 3661868113 FASTQ R1_L005 unaligned CPTAC3 b995d56d-579a-4300-9ab0-fd334b1ca8a2 2bc863b00397937c5dc200d736ca3127 { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor' } -C3N-02994.RNA-Seq.R1_.T C3N-02994 UCEC RNA-Seq tumor CPT0353500001 20210723_P2_H2_WB7988-plate2_S86_R1_001.fastq.gz 5810227537 FASTQ R1_ unaligned CPTAC3 16a4040d-6cb9-4c99-898a-6a1ccaf44a52 2cbbf7f39dd08dc1e829a13d80ef63ad { 'aliquot_tag': 'ALQ_7f88d6d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02994.RNA-Seq.R2_L005.T C3N-02994 UCEC RNA-Seq tumor CPT0248000009 190426_UNC32-K00270_0167_AH7CK7BBXY_AGTTCAGG-CCAACAGA_S15_L005_R2_001.fastq.gz 4190875867 FASTQ R2_L005 unaligned CPTAC3 dbc375a0-3b7e-4181-a849-6ee5d2d81f16 667935fdc3892fcec0eb5cb672223031 { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor' } -C3N-02994.RNA-Seq.R2_.T C3N-02994 UCEC RNA-Seq tumor CPT0353500001 20210723_P2_H2_WB7988-plate2_S86_R2_001.fastq.gz 5946996502 FASTQ R2_ unaligned CPTAC3 bb7242f9-3e20-4739-a2bd-3268133ff616 91b93323ba8d16da049ceb1cc50af508 { 'aliquot_tag': 'ALQ_7f88d6d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-02994.RNA-Seq.transcriptome.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 c1e44b12-aee8-44fa-88ca-c2abc4012cbc.rna_seq.transcriptome.gdc_realn.bam 9388405380 BAM transcriptome harmonized CPTAC3 8e3b48ac-0c9f-4151-bcb3-68722f6fb65e 606cb4eb3ae97001061178244cc4f15b { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor' } +C3N-02994.RNA-Seq.chimeric.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 554fc3a0-a01f-42a4-ba74-c6368c4a2714.rna_seq.chimeric.gdc_realn.bam 31093657 BAM chimeric harmonized CPTAC3 80ed7ad4-75ee-4173-a677-8ab34de9f8f9 3e40112defc8809cfd118465dbf1719e { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor' } +C3N-02994.RNA-Seq.chimeric.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0353500001 6c86579d-1ee1-4b6a-aaa9-d984bd633f63.rna_seq.chimeric.gdc_realn.bam 135431156 BAM chimeric harmonized CPTAC3 f2cd45e9-e4ce-48bf-b389-71898a313717 ea93575658ef54a98a1f642d410d9e3e { 'aliquot_tag': 'ALQ_7f88d6d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02994.RNA-Seq.genomic.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 554fc3a0-a01f-42a4-ba74-c6368c4a2714.rna_seq.genomic.gdc_realn.bam 7747781352 BAM genomic harmonized CPTAC3 921d9da9-2dfd-4b7b-83a8-8e6a9beb904c 0539504e620b5c313e5360559d5d5431 { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor' } +C3N-02994.RNA-Seq.genomic.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0353500001 6c86579d-1ee1-4b6a-aaa9-d984bd633f63.rna_seq.genomic.gdc_realn.bam 11804494214 BAM genomic harmonized CPTAC3 71c6e126-eaf0-4438-b885-7ab4f8d8b27b 319cec01ef6048ecc180b0c5f93fcaae { 'aliquot_tag': 'ALQ_7f88d6d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-02994.RNA-Seq.R1_L005.T C3N-02994 UCEC RNA-Seq tumor CPT0248000009 190426_UNC32-K00270_0167_AH7CK7BBXY_AGTTCAGG-CCAACAGA_S15_L005_R1_001.fastq.gz 3661868113 FASTQ R1_L005 unaligned CPTAC3 b995d56d-579a-4300-9ab0-fd334b1ca8a2 2bc863b00397937c5dc200d736ca3127 { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-02994.RNA-Seq.R2_L005.T C3N-02994 UCEC RNA-Seq tumor CPT0248000009 190426_UNC32-K00270_0167_AH7CK7BBXY_AGTTCAGG-CCAACAGA_S15_L005_R2_001.fastq.gz 4190875867 FASTQ R2_L005 unaligned CPTAC3 dbc375a0-3b7e-4181-a849-6ee5d2d81f16 667935fdc3892fcec0eb5cb672223031 { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-02994.RNA-Seq.T C3N-02994 UCEC RNA-Seq tumor CPT0353500001 20210723_P2_H2_WB7988-plate2_S86_R1_001.fastq.gz 5810227537 FASTQ unaligned CPTAC3 16a4040d-6cb9-4c99-898a-6a1ccaf44a52 2cbbf7f39dd08dc1e829a13d80ef63ad +C3N-02994.RNA-Seq.T C3N-02994 UCEC RNA-Seq tumor CPT0353500001 20210723_P2_H2_WB7988-plate2_S86_R2_001.fastq.gz 5946996502 FASTQ unaligned CPTAC3 bb7242f9-3e20-4739-a2bd-3268133ff616 91b93323ba8d16da049ceb1cc50af508 +C3N-02994.RNA-Seq.transcriptome.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0248000009 554fc3a0-a01f-42a4-ba74-c6368c4a2714.rna_seq.transcriptome.gdc_realn.bam 10653217237 BAM transcriptome harmonized CPTAC3 1c06f00a-7990-489e-837e-b007070be51d 7264b1338f844d6b90ebb4f2a476065a { 'aliquot_tag': 'ALQ_f8488f72', 'gdc_sample_type': 'Primary Tumor' } +C3N-02994.RNA-Seq.transcriptome.T.hg38 C3N-02994 UCEC RNA-Seq tumor CPT0353500001 6c86579d-1ee1-4b6a-aaa9-d984bd633f63.rna_seq.transcriptome.gdc_realn.bam 6493479917 BAM transcriptome harmonized CPTAC3 1f239cab-3a91-4316-927c-823ac7772386 66662c3826f4740d39fa815cbf19de49 { 'aliquot_tag': 'ALQ_7f88d6d4', 'gdc_sample_type': 'Primary Tumor' } C3N-02994.WGS.N C3N-02994 UCEC WGS blood_normal CPT0248020002 CPT0248020002.WholeGenome.RP-1303.bam 75446524146 BAM aligned CPTAC3 f20e2942-1f19-4d91-98e8-1d8ff73e92b3 90d3f2dd7ba79dfefe7ca13273acce96 { 'aliquot_tag': 'ALQ_155a059a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02994.WGS.N.hg38 C3N-02994 UCEC WGS blood_normal CPT0248020002 817230ce-0900-4cca-b699-52f2934b6c94_wgs_gdc_realn.bam 109568450980 BAM harmonized CPTAC3 68065e5b-2b40-41a8-b04a-aee29df393b2 f9dc5cf6878ea1426b83b2266d73172f { 'aliquot_tag': 'ALQ_155a059a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02994.WGS.T C3N-02994 UCEC WGS tumor CPT0248000006 CPT0248000006.WholeGenome.RP-1303.bam 59644262222 BAM aligned CPTAC3 51a451d9-2212-476d-852e-13825bae19a2 4bfcde5ed26d8468f4e8f9e998ba15b7 { 'aliquot_tag': 'ALQ_68f792e3', 'gdc_sample_type': 'Primary Tumor' } @@ -33688,23 +35945,29 @@ C3N-02994.WXS.N C3N-02994 UCEC WXS blood_normal CPT0248020002 CPT0248020002.Whol C3N-02994.WXS.N.hg38 C3N-02994 UCEC WXS blood_normal CPT0248020002 817230ce-0900-4cca-b699-52f2934b6c94_wxs_gdc_realn.bam 31825877339 BAM harmonized CPTAC3 5461a238-4778-4bea-b005-ccd62f2a1459 4573a5b60490b1902652d76902467854 { 'aliquot_tag': 'ALQ_155a059a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02994.WXS.T C3N-02994 UCEC WXS tumor CPT0248000006 CPT0248000006.WholeExome.RP-1303.bam 25292492968 BAM aligned CPTAC3 3f76a382-98a6-47a7-9af7-6e011526ac0b 5681cada21afba089136ae230e932f38 { 'aliquot_tag': 'ALQ_68f792e3', 'gdc_sample_type': 'Primary Tumor' } C3N-02994.WXS.T.hg38 C3N-02994 UCEC WXS tumor CPT0248000006 6e080613-cb5b-47b4-a1cc-8fb789dd31da_wxs_gdc_realn.bam 35356118056 BAM harmonized CPTAC3 ad9b2102-5fc0-4641-9c45-a00f6ea48f71 200fcf4ee5e25b476e0efe8a880351c0 { 'aliquot_tag': 'ALQ_68f792e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-02996.ANN_c487659e.RNA-Seq.chimeric.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 da94b236-5b10-4ec3-8505-62b90a163765.rna_seq.chimeric.gdc_realn.bam 396281832 BAM chimeric harmonized CPTAC3 4836d1e2-1cb5-4191-8f2a-0b5ce507dac6 9113f9cf8c9c544a34ca34d9931ddb46 { 'aliquot_tag': 'ANN_c487659e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02996.ANN_c487659e.RNA-Seq.genomic.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 da94b236-5b10-4ec3-8505-62b90a163765.rna_seq.genomic.gdc_realn.bam 15020742907 BAM genomic harmonized CPTAC3 074d5d45-df1e-45a0-b63c-ef6d8f681edd 56dc96f48dd6d169c288698e9c0cb279 { 'aliquot_tag': 'ANN_c487659e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02996.ANN_c487659e.RNA-Seq.R1_L005.T C3N-02996 PDA RNA-Seq tumor CPT0187820029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACAGGCGC-CTCTGCCT_S1_L005_R1_001.fastq.gz 5528271075 FASTQ R1_L005 unaligned CPTAC3 7dd43710-d433-4d6d-a13f-00d1b502e41c d0a3efef5b9ccfad8a7aa58d6972fca5 { 'aliquot_tag': 'ANN_c487659e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02996.ANN_c487659e.RNA-Seq.R2_L005.T C3N-02996 PDA RNA-Seq tumor CPT0187820029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACAGGCGC-CTCTGCCT_S1_L005_R2_001.fastq.gz 6280611223 FASTQ R2_L005 unaligned CPTAC3 0f5dcdca-0bd9-4440-8799-ed1e20b15054 055b437704d97a7ad3c6d2872457c419 { 'aliquot_tag': 'ANN_c487659e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } -C3N-02996.ANN_c487659e.RNA-Seq.transcriptome.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 da94b236-5b10-4ec3-8505-62b90a163765.rna_seq.transcriptome.gdc_realn.bam 11673930465 BAM transcriptome harmonized CPTAC3 d610ee9a-6f5e-4868-bc25-49c3eb8ef5e4 e2be02d94767854c55c95b9d3a06bf8e { 'aliquot_tag': 'ANN_c487659e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02996.ANN_c487659e.RNA-Seq.chimeric.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 a83cad1c-c716-4646-be4a-56eb21d62ebb.rna_seq.chimeric.gdc_realn.bam 396343179 BAM chimeric harmonized CPTAC3 a6a19b65-eee7-4ce6-bd2f-0aa6a2249a10 6e91f54a5402fd43e918898a5214cf14 { 'aliquot_tag': 'ANN_c487659e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02996.ANN_c487659e.RNA-Seq.genomic.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 a83cad1c-c716-4646-be4a-56eb21d62ebb.rna_seq.genomic.gdc_realn.bam 15045053170 BAM genomic harmonized CPTAC3 f7079272-e608-4297-ab8a-35b19db0ca62 7d15d844530eed89c5f39d5d15f01356 { 'aliquot_tag': 'ANN_c487659e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } +C3N-02996.ANN_c487659e.RNA-Seq.R1_L005.T C3N-02996 PDA RNA-Seq tumor CPT0187820029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACAGGCGC-CTCTGCCT_S1_L005_R1_001.fastq.gz 5528271075 FASTQ R1_L005 unaligned CPTAC3 7dd43710-d433-4d6d-a13f-00d1b502e41c d0a3efef5b9ccfad8a7aa58d6972fca5 { 'aliquot_tag': 'ANN_c487659e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R1', 'lane': 'L005' } +C3N-02996.ANN_c487659e.RNA-Seq.R2_L005.T C3N-02996 PDA RNA-Seq tumor CPT0187820029 200807_UNC32-K00270_0255_AHHY2WBBXY_ACAGGCGC-CTCTGCCT_S1_L005_R2_001.fastq.gz 6280611223 FASTQ R2_L005 unaligned CPTAC3 0f5dcdca-0bd9-4440-8799-ed1e20b15054 055b437704d97a7ad3c6d2872457c419 { 'aliquot_tag': 'ANN_c487659e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA', 'read': 'R2', 'lane': 'L005' } +C3N-02996.ANN_c487659e.RNA-Seq.transcriptome.T.hg38 C3N-02996 PDA RNA-Seq tumor CPT0187820029 a83cad1c-c716-4646-be4a-56eb21d62ebb.rna_seq.transcriptome.gdc_realn.bam 13046097029 BAM transcriptome harmonized CPTAC3 3b2969fc-6ab7-4f49-ba4e-c4a83442c212 af87157d94e6f9b939baf9841e5d59f7 { 'aliquot_tag': 'ANN_c487659e', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA' } C3N-02996.DUP_3d49bdc1.WXS.T C3N-02996 PDA WXS tumor CPT0187820033 CPT0187820033.WholeExome.RP-1303.bam 37486064868 BAM aligned CPTAC3 1af7be40-3009-47b4-81e0-63e1b75075e5 183d3999101070ee576cff2b4a0f2c5e { 'aliquot_tag': 'DUP_3d49bdc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02996.DUP_3d49bdc1.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820033 6b70063e-2445-4fd2-80d4-7bf0a9d80047_wxs_gdc_realn.bam 51355263780 BAM harmonized CPTAC3 ed5bb7bd-bedf-4585-9849-16526aae512a b3ff7e7c8215f8c438647c99389abe15 { 'aliquot_tag': 'DUP_3d49bdc1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3N-02996.DUP_4a4e8d57.WXS.T C3N-02996 PDA WXS tumor CPT0187820032 CPT0187820032.WholeExome.RP-1303.bam 40229541792 BAM aligned CPTAC3 18f6ca74-b2cd-47df-b639-fcb1fbd070ff f6184797f3ab68650e36bf7809a58bfd { 'aliquot_tag': 'DUP_4a4e8d57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA;Duplicate item: PDA BIOTEXT DNA' } -C3N-02996.DUP_4a4e8d57.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820032 b4ece7ff-2798-4fcd-a761-dd7baa91955e_wxs_gdc_realn.bam 55665090802 BAM harmonized CPTAC3 9f1fd6bd-a647-4e66-ab63-5a393e98cd67 6cfb832f24f09119fc14ae4ee2839302 { 'aliquot_tag': 'DUP_4a4e8d57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'PDA BIOTEXT RNA;Duplicate item: PDA BIOTEXT DNA' } +C3N-02996.DUP_4a4e8d57.WXS.T C3N-02996 PDA WXS tumor CPT0187820032 CPT0187820032.WholeExome.RP-1303.bam 40229541792 BAM aligned CPTAC3 18f6ca74-b2cd-47df-b639-fcb1fbd070ff f6184797f3ab68650e36bf7809a58bfd { 'aliquot_tag': 'DUP_4a4e8d57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA;PDA BIOTEXT RNA' } +C3N-02996.DUP_4a4e8d57.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820032 b4ece7ff-2798-4fcd-a761-dd7baa91955e_wxs_gdc_realn.bam 55665090802 BAM harmonized CPTAC3 9f1fd6bd-a647-4e66-ab63-5a393e98cd67 6cfb832f24f09119fc14ae4ee2839302 { 'aliquot_tag': 'DUP_4a4e8d57', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA;PDA BIOTEXT RNA' } +C3N-02996.DUP_704360fe.RNA-Seq.chimeric.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.chimeric.gdc_realn.bam 29257812 BAM chimeric harmonized CPTAC3 74b6605f-05f5-4a0e-8f44-d17fdb359651 32c31955a5511bd51b674e0914f48ccc { 'aliquot_tag': 'DUP_704360fe', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02996.DUP_704360fe.RNA-Seq.genomic.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.genomic.gdc_realn.bam 10586844730 BAM genomic harmonized CPTAC3 9862cc22-3c6f-4e16-a2e2-df1bb0cba663 822c4910e1ecccd31f020e31f13403a1 { 'aliquot_tag': 'DUP_704360fe', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02996.DUP_704360fe.RNA-Seq.R1_L006.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 220114_UNC32-K00270_0310_AHMWT5BBXY_CCAAGTCT-AAGGATGA_S18_L006_R1_001.fastq.gz 3979442144 FASTQ R1_L006 unaligned CPTAC3 35391da6-589f-420c-80c5-de947f7a2045 80166282b9565b5861e50c3c280c02c0 { 'aliquot_tag': 'DUP_704360fe', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L006' } +C3N-02996.DUP_704360fe.RNA-Seq.R2_L006.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 220114_UNC32-K00270_0310_AHMWT5BBXY_CCAAGTCT-AAGGATGA_S18_L006_R2_001.fastq.gz 4133641460 FASTQ R2_L006 unaligned CPTAC3 1dbfec2a-e020-443f-879e-0fe2c13198e3 ba2be5e6e67230ceb72e862391025a90 { 'aliquot_tag': 'DUP_704360fe', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L006' } +C3N-02996.DUP_704360fe.RNA-Seq.transcriptome.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 804ef640-1ce1-4626-a2d1-1c831dbd9f93.rna_seq.transcriptome.gdc_realn.bam 10304014062 BAM transcriptome harmonized CPTAC3 fdc1b803-c2bc-48ea-93f8-25724399bb0e 1ecf9b48eb6cdb659712300ab75e249e { 'aliquot_tag': 'DUP_704360fe', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02996.DUP_a32d2862.WXS.T C3N-02996 PDA WXS tumor CPT0187820034 CPT0187820034.WholeExome.RP-1303.bam 23045307994 BAM aligned CPTAC3 d29aebf7-b7ff-4241-a3e6-bb0f3dfc54eb 6db4755450dddbbef51206f5dec25926 { 'aliquot_tag': 'DUP_a32d2862', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02996.DUP_a32d2862.WXS.T.hg38 C3N-02996 PDA WXS tumor CPT0187820034 f33b3ac6-a22a-4e63-8480-429e1c2d27ba_wxs_gdc_realn.bam 31875468805 BAM harmonized CPTAC3 b8fc5c89-2d65-40ab-a969-62db1d608896 fb77d5d8f6ec9910a07fe816d6fba9ed { 'aliquot_tag': 'DUP_a32d2862', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02996.DUP_a98351e4.WXS.N C3N-02996 PDA WXS blood_normal CPT0187870002 CPT0187870002.WholeExome.RP-1303.bam 25792249388 BAM aligned CPTAC3 1d2e0ab5-9afb-4531-8965-42ef2dc880e9 668f43d158647e2e1aacd1b5f8f8b353 { 'aliquot_tag': 'DUP_a98351e4', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } C3N-02996.DUP_a98351e4.WXS.N.hg38 C3N-02996 PDA WXS blood_normal CPT0187870002 73505858-157d-4d4f-8e84-359a6344de48_wxs_gdc_realn.bam 35792510687 BAM harmonized CPTAC3 8c1b0bfa-edfc-4d5f-a009-42e5c796dd3f 05ed0c24e0850b51e6d30d74a5d1f74f { 'aliquot_tag': 'DUP_a98351e4', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: PDA BIOTEXT DNA' } -C3N-02996.RNA-Seq.R1_L002.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 220126_UNC32-K00270_0314_AHMVJ7BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 3898361037 FASTQ R1_L002 unaligned CPTAC3 a4d065fa-bb51-4c1d-bb63-6fba6e4bef30 fc2adf292e08f4883c7457282455636d { 'aliquot_tag': 'ALQ_e0fc7d6f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02996.RNA-Seq.R1_L006.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 220114_UNC32-K00270_0310_AHMWT5BBXY_CCAAGTCT-AAGGATGA_S18_L006_R1_001.fastq.gz 3979442144 FASTQ R1_L006 unaligned CPTAC3 35391da6-589f-420c-80c5-de947f7a2045 80166282b9565b5861e50c3c280c02c0 { 'aliquot_tag': 'ALQ_704360fe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02996.RNA-Seq.R2_L002.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 220126_UNC32-K00270_0314_AHMVJ7BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 4472756687 FASTQ R2_L002 unaligned CPTAC3 7601edaa-4619-49bc-8bd5-af3eae2bee25 99c6130bb8857ca06f46ca490dea4a7b { 'aliquot_tag': 'ALQ_e0fc7d6f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-02996.RNA-Seq.R2_L006.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830036 220114_UNC32-K00270_0310_AHMWT5BBXY_CCAAGTCT-AAGGATGA_S18_L006_R2_001.fastq.gz 4133641460 FASTQ R2_L006 unaligned CPTAC3 1dbfec2a-e020-443f-879e-0fe2c13198e3 ba2be5e6e67230ceb72e862391025a90 { 'aliquot_tag': 'ALQ_704360fe', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-02996.DUP_e0fc7d6f.RNA-Seq.chimeric.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 594b84e7-91e3-4204-9949-1483d03781c6.rna_seq.chimeric.gdc_realn.bam 93378285 BAM chimeric harmonized CPTAC3 ac669cdf-37ad-480f-bc7d-2f53b096276c e8f98efd69e86788020a1e5c5b7eb679 { 'aliquot_tag': 'DUP_e0fc7d6f', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02996.DUP_e0fc7d6f.RNA-Seq.genomic.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 594b84e7-91e3-4204-9949-1483d03781c6.rna_seq.genomic.gdc_realn.bam 11340229054 BAM genomic harmonized CPTAC3 14376aa2-e619-4e47-89f7-5c8b19603978 572df67fe41fded4046f89c90345b236 { 'aliquot_tag': 'DUP_e0fc7d6f', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } +C3N-02996.DUP_e0fc7d6f.RNA-Seq.R1_L002.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 220126_UNC32-K00270_0314_AHMVJ7BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 3898361037 FASTQ R1_L002 unaligned CPTAC3 a4d065fa-bb51-4c1d-bb63-6fba6e4bef30 fc2adf292e08f4883c7457282455636d { 'aliquot_tag': 'DUP_e0fc7d6f', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R1', 'lane': 'L002' } +C3N-02996.DUP_e0fc7d6f.RNA-Seq.R2_L002.A C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 220126_UNC32-K00270_0314_AHMVJ7BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 4472756687 FASTQ R2_L002 unaligned CPTAC3 7601edaa-4619-49bc-8bd5-af3eae2bee25 99c6130bb8857ca06f46ca490dea4a7b { 'aliquot_tag': 'DUP_e0fc7d6f', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA', 'read': 'R2', 'lane': 'L002' } +C3N-02996.DUP_e0fc7d6f.RNA-Seq.transcriptome.A.hg38 C3N-02996 PDA RNA-Seq tissue_normal CPT0187830039 594b84e7-91e3-4204-9949-1483d03781c6.rna_seq.transcriptome.gdc_realn.bam 10780795094 BAM transcriptome harmonized CPTAC3 9fc9f7d7-fc45-4ebc-b87b-a06ee1691a7b 4c26bd83f53a21f479df51f943648d1e { 'aliquot_tag': 'DUP_e0fc7d6f', 'gdc_sample_type': 'Solid Tissue Normal', 'aliquot_annotation': 'Duplicate item: PDA BioTEXT RNA' } C3N-02997.DUP_6ee29421.MethArray.Green.T C3N-02997 PDA Methylation Array tumor CPT0187880023 203561450023_R03C01_Grn.idat 13676221 IDAT Green NA CPTAC3 04eb4f3f-1ac9-49b7-beac-ebc4364957c2 e22f79cd5400d6dac6f0c00be930cb3b { 'aliquot_tag': 'DUP_6ee29421', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA Pilot - core-derived DNA' } C3N-02997.DUP_6ee29421.MethArray.Red.T C3N-02997 PDA Methylation Array tumor CPT0187880023 203561450023_R03C01_Red.idat 13676221 IDAT Red NA CPTAC3 4e98b347-eed9-4724-8824-d32228a344f2 58520673375a163f28fdf8461d115f8f { 'aliquot_tag': 'DUP_6ee29421', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA Pilot - core-derived DNA' } C3N-02997.DUP_6ee29421.WGS.T C3N-02997 PDA WGS tumor CPT0187880023 CPT0187880023.WholeGenome.RP-1303.bam 64503080897 BAM aligned CPTAC3 d8ed3017-c630-414c-8193-b31014ef7892 02d78aeff64588b7cc3afd9ea1bdea26 { 'aliquot_tag': 'DUP_6ee29421', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA Pilot - core-derived DNA' } @@ -33717,11 +35980,11 @@ C3N-02997.DUP_8e377d3f.WXS.T C3N-02997 PDA WXS tumor CPT0187880029 CPT0187880029 C3N-02997.DUP_8e377d3f.WXS.T.hg38 C3N-02997 PDA WXS tumor CPT0187880029 f4651bfd-45a2-4d90-a791-3a6ea57fac74_wxs_gdc_realn.bam 61514647521 BAM harmonized CPTAC3 33fbb651-d2ac-491e-9e61-bdaae9adc2db ef27c289f122ddbc50f79dc493243522 { 'aliquot_tag': 'DUP_8e377d3f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: PDA Pilot - bulk-derived DNA' } C3N-02997.miRNA-Seq.T C3N-02997 PDA miRNA-Seq tumor CPT0187880020 190108_UNC31-K00269_0176_AHYGLVBBXX_TGACCA_S4_L002_R1_001.unaln.bam 188904182 BAM unaligned CPTAC3 5fb3c51f-52b9-41eb-b307-2369ec7c2914 55bd82edcadd64481ceda6ba757420a6 { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor' } C3N-02997.miRNA-Seq.T.hg38 C3N-02997 PDA miRNA-Seq tumor CPT0187880020 1eeedacb-6e4e-47fd-a701-7a753afdf83f_mirnaseq_gdc_realn.bam 211693903 BAM harmonized CPTAC3 80dbe77f-da51-46d5-b822-183291d01611 a8fd99ab8139c3f8ea4450770325b3a1 { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02997.RNA-Seq.chimeric.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 06302bba-022f-41a2-8011-8192560a185e.rna_seq.chimeric.gdc_realn.bam 23895552 BAM chimeric harmonized CPTAC3 2369c316-3cd4-41de-9548-72c1915959ba f3943886efacaf3d966342b9ea9476f1 { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02997.RNA-Seq.genomic.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 06302bba-022f-41a2-8011-8192560a185e.rna_seq.genomic.gdc_realn.bam 11075594293 BAM genomic harmonized CPTAC3 d915f15b-1710-4f9d-9a5e-5e818f0dae04 a412c81b49ab523cf43f30fc34c0b524 { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02997.RNA-Seq.R1_L002.T C3N-02997 PDA RNA-Seq tumor CPT0187880020 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R1_001.fastq.gz 3834475097 FASTQ R1_L002 unaligned CPTAC3 d7462092-1df0-412e-b272-60f9e0c9799a 031cac9d31b31e2528eef0e263d5679b { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02997.RNA-Seq.R2_L002.T C3N-02997 PDA RNA-Seq tumor CPT0187880020 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R2_001.fastq.gz 4051846905 FASTQ R2_L002 unaligned CPTAC3 b150cdea-b5b2-4335-a26b-8e94a257c0ca 8f8e320d58655e5fd582d56058a23e6f { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor' } -C3N-02997.RNA-Seq.transcriptome.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 06302bba-022f-41a2-8011-8192560a185e.rna_seq.transcriptome.gdc_realn.bam 8442046583 BAM transcriptome harmonized CPTAC3 aed6e80b-5f66-4ba1-9953-0e369b81702f 39e69cfb1d8a11b29f84a2dbf581c1d3 { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02997.RNA-Seq.chimeric.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 5bdd6a54-4026-4f41-b0db-871011abf77e.rna_seq.chimeric.gdc_realn.bam 23887870 BAM chimeric harmonized CPTAC3 d8d6afa0-0afa-4e4a-887e-2f295692eee7 355f637b63cdb67c7df1ff59460be859 { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02997.RNA-Seq.genomic.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 5bdd6a54-4026-4f41-b0db-871011abf77e.rna_seq.genomic.gdc_realn.bam 11076419875 BAM genomic harmonized CPTAC3 0d5f1a76-9ddc-4535-a3ca-0c357e04925d 29914cbcf93ad951bd753f0b681a83ae { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor' } +C3N-02997.RNA-Seq.R1_L002.T C3N-02997 PDA RNA-Seq tumor CPT0187880020 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R1_001.fastq.gz 3834475097 FASTQ R1_L002 unaligned CPTAC3 d7462092-1df0-412e-b272-60f9e0c9799a 031cac9d31b31e2528eef0e263d5679b { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-02997.RNA-Seq.R2_L002.T C3N-02997 PDA RNA-Seq tumor CPT0187880020 190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R2_001.fastq.gz 4051846905 FASTQ R2_L002 unaligned CPTAC3 b150cdea-b5b2-4335-a26b-8e94a257c0ca 8f8e320d58655e5fd582d56058a23e6f { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-02997.RNA-Seq.transcriptome.T.hg38 C3N-02997 PDA RNA-Seq tumor CPT0187880020 5bdd6a54-4026-4f41-b0db-871011abf77e.rna_seq.transcriptome.gdc_realn.bam 9290512137 BAM transcriptome harmonized CPTAC3 d5f0444f-fbc3-4d1f-a806-95b421164ec4 5704a3fb0fb4e849c8a88e696a6000da { 'aliquot_tag': 'ALQ_f7ebc59b', 'gdc_sample_type': 'Primary Tumor' } C3N-02997.WGS.N C3N-02997 PDA WGS blood_normal CPT0187920002 CPT0187920002.WholeGenome.RP-1303.bam 64560886943 BAM aligned CPTAC3 570d4435-e312-45fe-8488-8f9948aee7df ea2427f42085a60b4d57ebf20c1b1ec7 { 'aliquot_tag': 'ALQ_aa3f0d31', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02997.WGS.N.hg38 C3N-02997 PDA WGS blood_normal CPT0187920002 ec85c30a-c8b0-4610-944a-85e223670cd6_wgs_gdc_realn.bam 92624705727 BAM harmonized CPTAC3 421461bc-6177-4cbb-a9cc-c98cf68b91aa 57c5c2672941fa037759326bb803fea6 { 'aliquot_tag': 'ALQ_aa3f0d31', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02997.WXS.N C3N-02997 PDA WXS blood_normal CPT0187920002 CPT0187920002.WholeExome.RP-1303.bam 24446342493 BAM aligned CPTAC3 1252179f-34e9-4028-bead-bd41a38300b5 70e850f0346ef024b9b3e844a36a0abd { 'aliquot_tag': 'ALQ_aa3f0d31', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33731,9 +35994,9 @@ C3N-02998.MethArray.Red.T C3N-02998 PDA Methylation Array tumor CPT0187930008 20 C3N-02998.miRNA-Seq.T C3N-02998 PDA miRNA-Seq tumor CPT0187930011 190828_UNC32-K00270_0200_BH7GVJBBXY_ATTCCT_S149_L007_R1_001.unaln.bam 193665924 BAM unaligned CPTAC3 4a74c685-8a11-4a7c-ba1e-084219741373 fb846c4cf83b747e087d0fec5db564bd { 'aliquot_tag': 'ALQ_174d447a', 'gdc_sample_type': 'Primary Tumor' } C3N-02998.miRNA-Seq.T.hg38 C3N-02998 PDA miRNA-Seq tumor CPT0187930011 4b55f44e-bf95-4359-854d-0e0fdf888c83_mirnaseq_gdc_realn.bam 212664658 BAM harmonized CPTAC3 d0e5abbc-3db2-495b-ba33-033245459c2b 44bc41597277fd2b7a311f2e4e3c7a41 { 'aliquot_tag': 'ALQ_174d447a', 'gdc_sample_type': 'Primary Tumor' } C3N-02998.RNA-Seq.chimeric.T.hg38 C3N-02998 PDA RNA-Seq tumor CPT0187930011 710ac9f5-3690-4018-8c2f-974e89663f68.rna_seq.chimeric.gdc_realn.bam 34903971 BAM chimeric harmonized CPTAC3 405c51d4-5c37-406b-858d-f7348dcfc295 06f91aca94d560ba696742c109c2c6d9 { 'aliquot_tag': 'ALQ_174d447a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02998.RNA-Seq.genomic.T.hg38 C3N-02998 PDA RNA-Seq tumor CPT0187930011 710ac9f5-3690-4018-8c2f-974e89663f68.rna_seq.genomic.gdc_realn.bam 8124643414 BAM genomic harmonized CPTAC3 d58f807a-737b-4983-be82-44d4804c3e0c e3aeb231c5250d4d7950ddeb62e5c5ff { 'aliquot_tag': 'ALQ_174d447a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02998.RNA-Seq.R1_L003.T C3N-02998 PDA RNA-Seq tumor CPT0187930011 190621_UNC32-K00270_0185_BH7G72BBXY_AGTACTCC-AACCTGTT_S12_L003_R1_001.fastq.gz 3810750341 FASTQ R1_L003 unaligned CPTAC3 bb3f5976-cf4d-48ff-9c8d-114bce4f2979 ce7970dbcdcf5b410043e4ec9a2dbdf1 { 'aliquot_tag': 'ALQ_174d447a', 'gdc_sample_type': 'Primary Tumor' } -C3N-02998.RNA-Seq.R2_L003.T C3N-02998 PDA RNA-Seq tumor CPT0187930011 190621_UNC32-K00270_0185_BH7G72BBXY_AGTACTCC-AACCTGTT_S12_L003_R2_001.fastq.gz 4118885680 FASTQ R2_L003 unaligned CPTAC3 9b05c168-9ae7-4fe1-9edc-1fb442ee2b2c 7ba57736074d55fb014d5d21ffd379d7 { 'aliquot_tag': 'ALQ_174d447a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02998.RNA-Seq.genomic.T.hg38 C3N-02998 PDA RNA-Seq tumor CPT0187930011 710ac9f5-3690-4018-8c2f-974e89663f68.rna_seq.genomic.gdc_realn.bam 8124643414 BAM genomic harmonized CPTAC3 a593751b-30d0-4211-ad2c-7bb0c9d4b26e e3aeb231c5250d4d7950ddeb62e5c5ff { 'aliquot_tag': 'ALQ_174d447a', 'gdc_sample_type': 'Primary Tumor' } +C3N-02998.RNA-Seq.R1_L003.T C3N-02998 PDA RNA-Seq tumor CPT0187930011 190621_UNC32-K00270_0185_BH7G72BBXY_AGTACTCC-AACCTGTT_S12_L003_R1_001.fastq.gz 3810750341 FASTQ R1_L003 unaligned CPTAC3 bb3f5976-cf4d-48ff-9c8d-114bce4f2979 ce7970dbcdcf5b410043e4ec9a2dbdf1 { 'aliquot_tag': 'ALQ_174d447a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-02998.RNA-Seq.R2_L003.T C3N-02998 PDA RNA-Seq tumor CPT0187930011 190621_UNC32-K00270_0185_BH7G72BBXY_AGTACTCC-AACCTGTT_S12_L003_R2_001.fastq.gz 4118885680 FASTQ R2_L003 unaligned CPTAC3 9b05c168-9ae7-4fe1-9edc-1fb442ee2b2c 7ba57736074d55fb014d5d21ffd379d7 { 'aliquot_tag': 'ALQ_174d447a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-02998.RNA-Seq.transcriptome.T.hg38 C3N-02998 PDA RNA-Seq tumor CPT0187930011 710ac9f5-3690-4018-8c2f-974e89663f68.rna_seq.transcriptome.gdc_realn.bam 10615689387 BAM transcriptome harmonized CPTAC3 8ce05acc-b55a-49d6-93fe-73af49c25b74 20f7707fafbdae58263261b315cb1e74 { 'aliquot_tag': 'ALQ_174d447a', 'gdc_sample_type': 'Primary Tumor' } C3N-02998.WGS.N C3N-02998 PDA WGS blood_normal CPT0187950002 CPT0187950002.WholeGenome.RP-1303.bam 60347374885 BAM aligned CPTAC3 05c063fd-8139-441f-8fff-255113106d35 2accd548c175e3ef698e672711b1d450 { 'aliquot_tag': 'ALQ_181fd121', 'gdc_sample_type': 'Blood Derived Normal' } C3N-02998.WGS.N.hg38 C3N-02998 PDA WGS blood_normal CPT0187950002 a04c1a55-7f29-4e6f-96a4-343dcec2a11d_wgs_gdc_realn.bam 86700302599 BAM harmonized CPTAC3 7510d57b-d023-4872-9d5b-71123e9dcc3c e5caeecaf2df0a13e1c6fc3df5050ed9 { 'aliquot_tag': 'ALQ_181fd121', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33746,9 +36009,9 @@ C3N-02998.WXS.T.hg38 C3N-02998 PDA WXS tumor CPT0187930008 42b516fb-b82e-44be-a6 C3N-03000.miRNA-Seq.T C3N-03000 PDA miRNA-Seq tumor CPT0226490010 190712_UNC32-K00270_0192_BH7HL3BBXY_CTCAGA_S16_L004_R1_001.unaln.bam 194981114 BAM unaligned CPTAC3 89fca0d1-10af-4ec3-bb4e-5905fb9b0ded 9e762b76379d591b2588a6d6fec2070e { 'aliquot_tag': 'ALQ_985e542a', 'gdc_sample_type': 'Primary Tumor' } C3N-03000.miRNA-Seq.T.hg38 C3N-03000 PDA miRNA-Seq tumor CPT0226490010 7272726f-32f1-4225-ae3c-73c022a8b785_mirnaseq_gdc_realn.bam 222829273 BAM harmonized CPTAC3 275da72e-dfa7-4a39-aec6-ff40785022d2 5345aad816c9ae25dd99ea9cc9d3faef { 'aliquot_tag': 'ALQ_985e542a', 'gdc_sample_type': 'Primary Tumor' } C3N-03000.RNA-Seq.chimeric.T.hg38 C3N-03000 PDA RNA-Seq tumor CPT0226490010 04ceba25-1785-42ac-b14c-dcea3d7c9175.rna_seq.chimeric.gdc_realn.bam 33155620 BAM chimeric harmonized CPTAC3 218e3540-cf77-4112-ac1c-a0cba76e6c74 533513cbe215ee21c52bd5ab510fbdfd { 'aliquot_tag': 'ALQ_985e542a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03000.RNA-Seq.genomic.T.hg38 C3N-03000 PDA RNA-Seq tumor CPT0226490010 04ceba25-1785-42ac-b14c-dcea3d7c9175.rna_seq.genomic.gdc_realn.bam 8416966449 BAM genomic harmonized CPTAC3 03be5751-b93e-46b4-8859-600055487c23 b93bf371d181e408402735c9d91b7b87 { 'aliquot_tag': 'ALQ_985e542a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03000.RNA-Seq.R1_L002.T C3N-03000 PDA RNA-Seq tumor CPT0226490010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCTGTTGG-TCGAATGG_S5_L002_R1_001.fastq.gz 3869639482 FASTQ R1_L002 unaligned CPTAC3 54a81289-1137-4f78-b8bf-9ecc81dec020 a1f0aa2baee1ef7b8ada7925f9c9aae0 { 'aliquot_tag': 'ALQ_985e542a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03000.RNA-Seq.R2_L002.T C3N-03000 PDA RNA-Seq tumor CPT0226490010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCTGTTGG-TCGAATGG_S5_L002_R2_001.fastq.gz 4496572036 FASTQ R2_L002 unaligned CPTAC3 724184e1-df7b-45a8-a54a-3e06e70cdfac cb65fdfde0143dfc302fcbced1f5bdba { 'aliquot_tag': 'ALQ_985e542a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03000.RNA-Seq.genomic.T.hg38 C3N-03000 PDA RNA-Seq tumor CPT0226490010 04ceba25-1785-42ac-b14c-dcea3d7c9175.rna_seq.genomic.gdc_realn.bam 8416966449 BAM genomic harmonized CPTAC3 df551248-daa8-4f7c-b46e-2c2f4601dcc4 b93bf371d181e408402735c9d91b7b87 { 'aliquot_tag': 'ALQ_985e542a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03000.RNA-Seq.R1_L002.T C3N-03000 PDA RNA-Seq tumor CPT0226490010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCTGTTGG-TCGAATGG_S5_L002_R1_001.fastq.gz 3869639482 FASTQ R1_L002 unaligned CPTAC3 54a81289-1137-4f78-b8bf-9ecc81dec020 a1f0aa2baee1ef7b8ada7925f9c9aae0 { 'aliquot_tag': 'ALQ_985e542a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03000.RNA-Seq.R2_L002.T C3N-03000 PDA RNA-Seq tumor CPT0226490010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCTGTTGG-TCGAATGG_S5_L002_R2_001.fastq.gz 4496572036 FASTQ R2_L002 unaligned CPTAC3 724184e1-df7b-45a8-a54a-3e06e70cdfac cb65fdfde0143dfc302fcbced1f5bdba { 'aliquot_tag': 'ALQ_985e542a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-03000.RNA-Seq.transcriptome.T.hg38 C3N-03000 PDA RNA-Seq tumor CPT0226490010 04ceba25-1785-42ac-b14c-dcea3d7c9175.rna_seq.transcriptome.gdc_realn.bam 11096125265 BAM transcriptome harmonized CPTAC3 8afcb85d-d0fb-49f2-ad56-288eab58e3a2 91caa51d0d568d44e5e6c8d1c104fa7c { 'aliquot_tag': 'ALQ_985e542a', 'gdc_sample_type': 'Primary Tumor' } C3N-03000.WGS.N C3N-03000 PDA WGS blood_normal CPT0226510002 CPT0226510002.WholeGenome.RP-1303.bam 60250350153 BAM aligned CPTAC3 582cb241-469a-45ae-b8b2-720f4ea0876e 331543ae1821180f65a5a3cb532cf4ef { 'aliquot_tag': 'ALQ_94679c23', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03000.WGS.N.hg38 C3N-03000 PDA WGS blood_normal CPT0226510002 7641e92d-11b2-4a00-a7df-73582f959c5f_wgs_gdc_realn.bam 89957250752 BAM harmonized CPTAC3 89f61f41-6102-42d4-9f39-49c9ee23caf6 315275592128e9bab1b18439d54ea64c { 'aliquot_tag': 'ALQ_94679c23', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33762,11 +36025,11 @@ C3N-03001.MethArray.Green.T C3N-03001 GBM Methylation Array tumor CPT0248230006 C3N-03001.MethArray.Red.T C3N-03001 GBM Methylation Array tumor CPT0248230006 204367470132_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 adc9401c-f592-47de-a534-3ca99f3cf183 feac0b28926175b4065ead0396f744f2 { 'aliquot_tag': 'ALQ_629f4938', 'gdc_sample_type': 'Primary Tumor' } C3N-03001.miRNA-Seq.T C3N-03001 GBM miRNA-Seq tumor CPT0248230009 200403_UNC31-K00269_0274_AHCF7GBBXY_GGCTAC_S35_L002_R1_001.unaln.bam 220154090 BAM unaligned CPTAC3 ab9934f5-2e2f-49a7-989f-fc5ce90b0ad2 59f997c0994657e8e603673b0562817e { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor' } C3N-03001.miRNA-Seq.T.hg38 C3N-03001 GBM miRNA-Seq tumor CPT0248230009 f01b3ee3-eb0d-4faf-9431-51078e0bde67_mirnaseq_gdc_realn.bam 246572830 BAM harmonized CPTAC3 24b0e422-f608-4908-a1e5-161e44cb2cad 655f8017e3ff204ada57b6197f581e27 { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03001.RNA-Seq.chimeric.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 78b21879-b6b1-4afe-8917-aab98a9ab088.rna_seq.chimeric.gdc_realn.bam 198713346 BAM chimeric harmonized CPTAC3 0fbd4eae-860d-4c66-9c9e-6b953a0070cc 9fd1d468fdfeb468c248801775361caf { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03001.RNA-Seq.genomic.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 78b21879-b6b1-4afe-8917-aab98a9ab088.rna_seq.genomic.gdc_realn.bam 9160128609 BAM genomic harmonized CPTAC3 a72c06bb-a8cc-4e98-80a2-d725739214ba 6730bad8dc0f2e34ad10d03c94cc9a90 { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03001.RNA-Seq.R1_L001.T C3N-03001 GBM RNA-Seq tumor CPT0248230009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 3761960687 FASTQ R1_L001 unaligned CPTAC3 1b916065-70cc-431f-923f-2e2305f9491b 132eec228d43b24a9fb5092a6d019865 { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03001.RNA-Seq.R2_L001.T C3N-03001 GBM RNA-Seq tumor CPT0248230009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4621533496 FASTQ R2_L001 unaligned CPTAC3 634a6d31-e1f2-40a7-b9ee-b14c1965bb5d 4f47f1399b812130c239f1b39deb5fab { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03001.RNA-Seq.transcriptome.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 78b21879-b6b1-4afe-8917-aab98a9ab088.rna_seq.transcriptome.gdc_realn.bam 7047060694 BAM transcriptome harmonized CPTAC3 aa3e642c-b064-4754-8b68-0d58e84feb5a b2218e5a8d4be0b77396ea80a67d9dac { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03001.RNA-Seq.chimeric.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 4f98b2f7-0c0e-469f-b2df-4a0d29a51b80.rna_seq.chimeric.gdc_realn.bam 198690393 BAM chimeric harmonized CPTAC3 3bcd1232-38fa-4196-9e2d-c8e02e68fd2e f458af4c2a69eae2f7d554a969d2a323 { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03001.RNA-Seq.genomic.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 4f98b2f7-0c0e-469f-b2df-4a0d29a51b80.rna_seq.genomic.gdc_realn.bam 9160804913 BAM genomic harmonized CPTAC3 1b81aa50-f275-4420-bacc-42df6d331f64 a8d5c2b5be48a1b483509fd1dcbff56f { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03001.RNA-Seq.R1_L001.T C3N-03001 GBM RNA-Seq tumor CPT0248230009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 3761960687 FASTQ R1_L001 unaligned CPTAC3 1b916065-70cc-431f-923f-2e2305f9491b 132eec228d43b24a9fb5092a6d019865 { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03001.RNA-Seq.R2_L001.T C3N-03001 GBM RNA-Seq tumor CPT0248230009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4621533496 FASTQ R2_L001 unaligned CPTAC3 634a6d31-e1f2-40a7-b9ee-b14c1965bb5d 4f47f1399b812130c239f1b39deb5fab { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03001.RNA-Seq.transcriptome.T.hg38 C3N-03001 GBM RNA-Seq tumor CPT0248230009 4f98b2f7-0c0e-469f-b2df-4a0d29a51b80.rna_seq.transcriptome.gdc_realn.bam 7901986050 BAM transcriptome harmonized CPTAC3 cc19d3f2-13bf-475c-a2aa-432d3d0f1e04 6373a829540f485a2bba0d8b3c95164a { 'aliquot_tag': 'ALQ_f22054a9', 'gdc_sample_type': 'Primary Tumor' } C3N-03001.WGS.N C3N-03001 GBM WGS blood_normal CPT0248310002 CPT0248310002.WholeGenome.RP-2158.bam 25352497557 BAM aligned CPTAC3 680cef4f-4ec7-41c7-91cf-507eb20e1dc9 248cabe88345469bf9bd013dee2ce580 { 'aliquot_tag': 'ALQ_d46e0de4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03001.WGS.N.hg38 C3N-03001 GBM WGS blood_normal CPT0248310002 b1328107-60b3-4caa-9aeb-4a20ff059f1b_wgs_gdc_realn.bam 74657515788 BAM harmonized CPTAC3 d094a1b6-d186-450d-8cd9-4581a517d22b 5fcb4f8bdc5921fadbae059e670b309c { 'aliquot_tag': 'ALQ_d46e0de4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03001.WGS.T C3N-03001 GBM WGS tumor CPT0248230006 CPT0248230006.WholeGenome.RP-2158.bam 20492866379 BAM aligned CPTAC3 6006e857-617d-4e76-b433-d456e450cc8c aa598b87a110af43b6fa8dff2fdca44b { 'aliquot_tag': 'ALQ_629f4938', 'gdc_sample_type': 'Primary Tumor' } @@ -33779,11 +36042,11 @@ C3N-03003.MethArray.Green.T C3N-03003 GBM Methylation Array tumor CPT0224960006 C3N-03003.MethArray.Red.T C3N-03003 GBM Methylation Array tumor CPT0224960006 204372030106_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 df6da8b9-723f-4194-b38e-9ad587d0a819 4ba04447ab9435ef5346518a0395468d { 'aliquot_tag': 'ALQ_c1775578', 'gdc_sample_type': 'Primary Tumor' } C3N-03003.miRNA-Seq.T C3N-03003 GBM miRNA-Seq tumor CPT0224960009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 242262802 BAM unaligned CPTAC3 77dd96e1-b665-4e7a-b3cb-b336a6907184 0d8fed3e0aa24bc83dbd17fce26efa96 { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor' } C3N-03003.miRNA-Seq.T.hg38 C3N-03003 GBM miRNA-Seq tumor CPT0224960009 29d318a8-fcc5-430d-a734-e0fd1a07c227_mirnaseq_gdc_realn.bam 266042176 BAM harmonized CPTAC3 54d4483f-fa2a-46b0-b9ba-2cc022056c7e f89f2419744618c4816ddb50e88b866b { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03003.RNA-Seq.chimeric.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 4ab07cf6-95b8-409f-8d4e-faff9474ad1d.rna_seq.chimeric.gdc_realn.bam 28231060 BAM chimeric harmonized CPTAC3 fb17d6f2-e250-482b-84e5-3dcc269c897e f68ff9c292f1cf1eac090d6209b8272e { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03003.RNA-Seq.genomic.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 4ab07cf6-95b8-409f-8d4e-faff9474ad1d.rna_seq.genomic.gdc_realn.bam 7300014612 BAM genomic harmonized CPTAC3 79db7ae4-f8e8-4d6e-adde-03594acddb75 fdaedd2f294a54f31ec4f0db3d1c1b31 { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03003.RNA-Seq.R1_L003.T C3N-03003 GBM RNA-Seq tumor CPT0224960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R1_001.fastq.gz 3196550993 FASTQ R1_L003 unaligned CPTAC3 c465924b-72b1-4df5-858a-bdfdc8c0f484 29e93e21fe30da7ea17daf6e76184148 { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03003.RNA-Seq.R2_L003.T C3N-03003 GBM RNA-Seq tumor CPT0224960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R2_001.fastq.gz 3735606264 FASTQ R2_L003 unaligned CPTAC3 b68baa4c-eac8-4981-8f81-936605755b5d 9b878312a5c812b1811c8bfe4519a79c { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03003.RNA-Seq.transcriptome.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 4ab07cf6-95b8-409f-8d4e-faff9474ad1d.rna_seq.transcriptome.gdc_realn.bam 6657244138 BAM transcriptome harmonized CPTAC3 94aa9a39-72bb-477e-93ab-daeda3c2bc36 37520c025bf874444181e8a2cfb53845 { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03003.RNA-Seq.chimeric.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 96255c92-73ff-4d4c-a7cd-e30dfbdac5f6.rna_seq.chimeric.gdc_realn.bam 28223096 BAM chimeric harmonized CPTAC3 382cc3a5-3a05-40df-9148-f0e6709c6acd a25bfd4d6043c52d96e760b2c65de30d { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03003.RNA-Seq.genomic.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 96255c92-73ff-4d4c-a7cd-e30dfbdac5f6.rna_seq.genomic.gdc_realn.bam 7300753571 BAM genomic harmonized CPTAC3 cdc0ec94-b498-4a4c-9d82-7473738d31be aa9ae881d871d4bd6f3a87c860a33f1e { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03003.RNA-Seq.R1_L003.T C3N-03003 GBM RNA-Seq tumor CPT0224960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R1_001.fastq.gz 3196550993 FASTQ R1_L003 unaligned CPTAC3 c465924b-72b1-4df5-858a-bdfdc8c0f484 29e93e21fe30da7ea17daf6e76184148 { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03003.RNA-Seq.R2_L003.T C3N-03003 GBM RNA-Seq tumor CPT0224960009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R2_001.fastq.gz 3735606264 FASTQ R2_L003 unaligned CPTAC3 b68baa4c-eac8-4981-8f81-936605755b5d 9b878312a5c812b1811c8bfe4519a79c { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-03003.RNA-Seq.transcriptome.T.hg38 C3N-03003 GBM RNA-Seq tumor CPT0224960009 96255c92-73ff-4d4c-a7cd-e30dfbdac5f6.rna_seq.transcriptome.gdc_realn.bam 7456818471 BAM transcriptome harmonized CPTAC3 f4e7adf8-4dc6-45a7-b7bd-0f6ca0452964 b89882e9dae70de20ebe48526dec8b16 { 'aliquot_tag': 'ALQ_51c848e9', 'gdc_sample_type': 'Primary Tumor' } C3N-03003.WGS.N C3N-03003 GBM WGS blood_normal CPT0225800002 CPT0225800002.WholeGenome.RP-2158.bam 21861962263 BAM aligned CPTAC3 afaa9fdc-4de9-4cc5-9cfb-9d5203ce917d 3386854f00785cd9febe25f4129d9b9c { 'aliquot_tag': 'ALQ_2471bcd0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03003.WGS.N.hg38 C3N-03003 GBM WGS blood_normal CPT0225800002 201dfe54-d739-488d-9e80-1ced195f0d9b_wgs_gdc_realn.bam 66348324743 BAM harmonized CPTAC3 daaee450-05a7-4451-a8bc-466d4cc6a324 229fb9b7f24b01fcf83b57ed93d99dc7 { 'aliquot_tag': 'ALQ_2471bcd0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03003.WGS.T C3N-03003 GBM WGS tumor CPT0224960006 CPT0224960006.WholeGenome.RP-2158.bam 21329109644 BAM aligned CPTAC3 8f9259aa-8bab-4474-a691-dee8dad78929 222b2e704d7876217d88d8681498942c { 'aliquot_tag': 'ALQ_c1775578', 'gdc_sample_type': 'Primary Tumor' } @@ -33796,13 +36059,16 @@ C3N-03005.MethArray.Green.T C3N-03005 UCEC Methylation Array tumor CPT0247940006 C3N-03005.MethArray.Red.T C3N-03005 UCEC Methylation Array tumor CPT0247940006 203561450073_R02C01_Red.idat 13676221 IDAT Red NA CPTAC3 e5caecbf-010c-4977-8534-6911d7450609 45723368e2050c8948c9f5555c909738 { 'aliquot_tag': 'ALQ_4c301502', 'gdc_sample_type': 'Primary Tumor' } C3N-03005.miRNA-Seq.T C3N-03005 UCEC miRNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0215_BH7FYKBBXY_CAGATC_S7_L001_R1_001.unaln.bam 221844926 BAM unaligned CPTAC3 2551cf95-ff28-4726-ac0c-9821a404d9bc f1374f8930c0f3be7d62ffe604ceaed8 { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor' } C3N-03005.miRNA-Seq.T.hg38 C3N-03005 UCEC miRNA-Seq tumor CPT0247940009 8d630c1c-64dd-4e19-8f55-4270c464729d_mirnaseq_gdc_realn.bam 249197684 BAM harmonized CPTAC3 64261df7-c073-4396-80ba-8db76c0838fd 35b8c668043d2b9a200f9af354b69ccc { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor' } -C3N-03005.RNA-Seq.chimeric.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 4f87d8aa-a76a-4eae-b491-b8a26f8fb9bf.rna_seq.chimeric.gdc_realn.bam 32555749 BAM chimeric harmonized CPTAC3 3334ae81-63a1-4f90-967f-d5e02486f342 34753bbb924b11d3596bdb13344f10e9 { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor' } -C3N-03005.RNA-Seq.genomic.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 4f87d8aa-a76a-4eae-b491-b8a26f8fb9bf.rna_seq.genomic.gdc_realn.bam 8147675775 BAM genomic harmonized CPTAC3 83d8606c-29b2-4b2e-a15e-4de96cd4525c 11eac1f890a6e5c834b25568dc7ab9cb { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor' } -C3N-03005.RNA-Seq.R1_L005.T C3N-03005 UCEC RNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R1_001.fastq.gz 3900170966 FASTQ R1_L005 unaligned CPTAC3 1c1ffe14-00f8-4f81-ac0b-7ef13ed8c1ac 350943c4acec4f0e2ddb9baef388dce8 { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor' } -C3N-03005.RNA-Seq.R1_.T C3N-03005 UCEC RNA-Seq tumor CPT0353620001 20210729_P3_G4_WB7988-Plate3_S76_R1_001.fastq.gz 5615640760 FASTQ R1_ unaligned CPTAC3 2d47901f-2b7d-4329-9061-b3fda249ebde feef6a77fb3f6d9c5f17b8cf16aeeb1c { 'aliquot_tag': 'ALQ_83dcf71a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03005.RNA-Seq.R2_L005.T C3N-03005 UCEC RNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R2_001.fastq.gz 4267444972 FASTQ R2_L005 unaligned CPTAC3 660d46c1-49bb-4bed-9382-5279c22c13f8 5c1a55a1cd0d5e2578c9152b5f41ded3 { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor' } -C3N-03005.RNA-Seq.R2_.T C3N-03005 UCEC RNA-Seq tumor CPT0353620001 20210729_P3_G4_WB7988-Plate3_S76_R2_001.fastq.gz 5783374916 FASTQ R2_ unaligned CPTAC3 e97b3e53-a357-4ca5-ae25-325026a707e6 c78ff111ca289d0493d619bbaf08717f { 'aliquot_tag': 'ALQ_83dcf71a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03005.RNA-Seq.transcriptome.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 4f87d8aa-a76a-4eae-b491-b8a26f8fb9bf.rna_seq.transcriptome.gdc_realn.bam 9693322040 BAM transcriptome harmonized CPTAC3 f7539411-9a6c-46cc-9f6e-bcca11aa8a05 2a98751b009b277bce3c26a40ac41b2b { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor' } +C3N-03005.RNA-Seq.chimeric.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 f4a909cf-37ca-49b7-8fe4-2d15c3806897.rna_seq.chimeric.gdc_realn.bam 32561294 BAM chimeric harmonized CPTAC3 6d6c8fcc-5fb4-4332-acfb-4844f5e16c6d 5d6ddd5e229c51c3f3df878d83615fc8 { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor' } +C3N-03005.RNA-Seq.chimeric.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0353620001 c65dcf9d-873e-4222-af00-71a2eca81bc3.rna_seq.chimeric.gdc_realn.bam 225607764 BAM chimeric harmonized CPTAC3 9cff33db-397b-48fa-91be-b2dc16fa6b1f 46cb8f1a8425d2bc298503a5b4df9cda { 'aliquot_tag': 'ALQ_83dcf71a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03005.RNA-Seq.genomic.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 f4a909cf-37ca-49b7-8fe4-2d15c3806897.rna_seq.genomic.gdc_realn.bam 8149412697 BAM genomic harmonized CPTAC3 0b95ad44-5943-4e69-b0a6-108e72f6a6e9 97f0a7dbf17dd7356a49ad527b658d18 { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor' } +C3N-03005.RNA-Seq.genomic.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0353620001 c65dcf9d-873e-4222-af00-71a2eca81bc3.rna_seq.genomic.gdc_realn.bam 8418364202 BAM genomic harmonized CPTAC3 bb9d8cb6-9909-443e-9526-b37e642b2c3c 695a30a0949af54c9eef5c891ecf8b7f { 'aliquot_tag': 'ALQ_83dcf71a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03005.RNA-Seq.R1_L005.T C3N-03005 UCEC RNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R1_001.fastq.gz 3900170966 FASTQ R1_L005 unaligned CPTAC3 1c1ffe14-00f8-4f81-ac0b-7ef13ed8c1ac 350943c4acec4f0e2ddb9baef388dce8 { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03005.RNA-Seq.R2_L005.T C3N-03005 UCEC RNA-Seq tumor CPT0247940009 190508_UNC31-K00269_0214_AH7FTJBBXY_CAAGCTAG-ACATAGCG_S18_L005_R2_001.fastq.gz 4267444972 FASTQ R2_L005 unaligned CPTAC3 660d46c1-49bb-4bed-9382-5279c22c13f8 5c1a55a1cd0d5e2578c9152b5f41ded3 { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-03005.RNA-Seq.T C3N-03005 UCEC RNA-Seq tumor CPT0353620001 20210729_P3_G4_WB7988-Plate3_S76_R1_001.fastq.gz 5615640760 FASTQ unaligned CPTAC3 2d47901f-2b7d-4329-9061-b3fda249ebde feef6a77fb3f6d9c5f17b8cf16aeeb1c +C3N-03005.RNA-Seq.T C3N-03005 UCEC RNA-Seq tumor CPT0353620001 20210729_P3_G4_WB7988-Plate3_S76_R2_001.fastq.gz 5783374916 FASTQ unaligned CPTAC3 e97b3e53-a357-4ca5-ae25-325026a707e6 c78ff111ca289d0493d619bbaf08717f +C3N-03005.RNA-Seq.transcriptome.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0247940009 f4a909cf-37ca-49b7-8fe4-2d15c3806897.rna_seq.transcriptome.gdc_realn.bam 10965349086 BAM transcriptome harmonized CPTAC3 1ee55a5c-1259-46c0-9a1f-8560a4c3ec14 4cdae2181d46dd76a4f3b43b12fb3335 { 'aliquot_tag': 'ALQ_dc8f0893', 'gdc_sample_type': 'Primary Tumor' } +C3N-03005.RNA-Seq.transcriptome.T.hg38 C3N-03005 UCEC RNA-Seq tumor CPT0353620001 c65dcf9d-873e-4222-af00-71a2eca81bc3.rna_seq.transcriptome.gdc_realn.bam 3478357843 BAM transcriptome harmonized CPTAC3 ce365184-e4e3-4bf4-9a57-6e8e54e1e63a 0be6cc1c5d52844939c5480aa93cdcb1 { 'aliquot_tag': 'ALQ_83dcf71a', 'gdc_sample_type': 'Primary Tumor' } C3N-03005.WGS.N C3N-03005 UCEC WGS blood_normal CPT0247960002 CPT0247960002.WholeGenome.RP-1303.bam 56898050180 BAM aligned CPTAC3 d028fa1b-6ff7-434c-83b8-0cebe1465223 28ca3f6595f420a44e24fb07af11488f { 'aliquot_tag': 'ALQ_319d827b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03005.WGS.N.hg38 C3N-03005 UCEC WGS blood_normal CPT0247960002 1ff09d98-fbb1-4c76-a9b2-89d6d6d611db_wgs_gdc_realn.bam 85141307683 BAM harmonized CPTAC3 d727a80b-069b-4e7d-af2e-efc35e450cc5 6118797b3d15fd968a265be40b163fb3 { 'aliquot_tag': 'ALQ_319d827b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03005.WGS.T C3N-03005 UCEC WGS tumor CPT0247940006 CPT0247940006.WholeGenome.RP-1303.bam 60778731002 BAM aligned CPTAC3 75788105-8153-4da4-8e53-45c2df7e4e5f e64b16b9e103e4828d958a9aaa505fb1 { 'aliquot_tag': 'ALQ_4c301502', 'gdc_sample_type': 'Primary Tumor' } @@ -33816,9 +36082,9 @@ C3N-03006.MethArray.Red.T C3N-03006 PDA Methylation Array tumor CPT0226530007 20 C3N-03006.miRNA-Seq.T C3N-03006 PDA miRNA-Seq tumor CPT0226530014 190813_UNC32-K00270_0196_AH5MCWBBXY_CATGGC_S19_L003_R1_001.unaln.bam 311672891 BAM unaligned CPTAC3 6cd86076-8d56-4f74-a976-46b4d87a4717 4f379e1a299e4ec109ea0078c304f9c9 { 'aliquot_tag': 'ALQ_1edf5b37', 'gdc_sample_type': 'Primary Tumor' } C3N-03006.miRNA-Seq.T.hg38 C3N-03006 PDA miRNA-Seq tumor CPT0226530014 89365744-3b9c-471d-b923-46814e31ff2a_mirnaseq_gdc_realn.bam 353629087 BAM harmonized CPTAC3 60767f56-bed7-4a8d-b937-491775cc9583 bbfded9a66cdc01bc7d63bc5c45aaedf { 'aliquot_tag': 'ALQ_1edf5b37', 'gdc_sample_type': 'Primary Tumor' } C3N-03006.RNA-Seq.chimeric.T.hg38 C3N-03006 PDA RNA-Seq tumor CPT0226530014 40a45e2f-aa1b-4667-a4b4-b4a14d5438e6.rna_seq.chimeric.gdc_realn.bam 38201474 BAM chimeric harmonized CPTAC3 afe67a1c-2111-458a-8766-bc28f35590d0 c2956d1180a07840cfb68e1e6316138c { 'aliquot_tag': 'ALQ_1edf5b37', 'gdc_sample_type': 'Primary Tumor' } -C3N-03006.RNA-Seq.genomic.T.hg38 C3N-03006 PDA RNA-Seq tumor CPT0226530014 40a45e2f-aa1b-4667-a4b4-b4a14d5438e6.rna_seq.genomic.gdc_realn.bam 9531109301 BAM genomic harmonized CPTAC3 aa6842f4-22b4-473b-9003-99cc6421c00f a36f7e01df681c94617b72ea75fea5a0 { 'aliquot_tag': 'ALQ_1edf5b37', 'gdc_sample_type': 'Primary Tumor' } -C3N-03006.RNA-Seq.R1_L007.T C3N-03006 PDA RNA-Seq tumor CPT0226530014 190702_UNC32-K00270_0188_BH7CLJBBXY_GCAGAATT-ACCGGCCA_S28_L007_R1_001.fastq.gz 4371309904 FASTQ R1_L007 unaligned CPTAC3 056f7b6d-efb7-4819-9688-cda521c7f33a fd3bd3ff2736a2e5047f7935b6e6d845 { 'aliquot_tag': 'ALQ_1edf5b37', 'gdc_sample_type': 'Primary Tumor' } -C3N-03006.RNA-Seq.R2_L007.T C3N-03006 PDA RNA-Seq tumor CPT0226530014 190702_UNC32-K00270_0188_BH7CLJBBXY_GCAGAATT-ACCGGCCA_S28_L007_R2_001.fastq.gz 4977189999 FASTQ R2_L007 unaligned CPTAC3 f0543f34-912b-4e61-b5f9-4edb67cd470b 1914a1e5f262a6bebadc9dcb89f8031c { 'aliquot_tag': 'ALQ_1edf5b37', 'gdc_sample_type': 'Primary Tumor' } +C3N-03006.RNA-Seq.genomic.T.hg38 C3N-03006 PDA RNA-Seq tumor CPT0226530014 40a45e2f-aa1b-4667-a4b4-b4a14d5438e6.rna_seq.genomic.gdc_realn.bam 9531109301 BAM genomic harmonized CPTAC3 9a13c97c-b6df-482f-9f2a-718d4622321e a36f7e01df681c94617b72ea75fea5a0 { 'aliquot_tag': 'ALQ_1edf5b37', 'gdc_sample_type': 'Primary Tumor' } +C3N-03006.RNA-Seq.R1_L007.T C3N-03006 PDA RNA-Seq tumor CPT0226530014 190702_UNC32-K00270_0188_BH7CLJBBXY_GCAGAATT-ACCGGCCA_S28_L007_R1_001.fastq.gz 4371309904 FASTQ R1_L007 unaligned CPTAC3 056f7b6d-efb7-4819-9688-cda521c7f33a fd3bd3ff2736a2e5047f7935b6e6d845 { 'aliquot_tag': 'ALQ_1edf5b37', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03006.RNA-Seq.R2_L007.T C3N-03006 PDA RNA-Seq tumor CPT0226530014 190702_UNC32-K00270_0188_BH7CLJBBXY_GCAGAATT-ACCGGCCA_S28_L007_R2_001.fastq.gz 4977189999 FASTQ R2_L007 unaligned CPTAC3 f0543f34-912b-4e61-b5f9-4edb67cd470b 1914a1e5f262a6bebadc9dcb89f8031c { 'aliquot_tag': 'ALQ_1edf5b37', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-03006.RNA-Seq.transcriptome.T.hg38 C3N-03006 PDA RNA-Seq tumor CPT0226530014 40a45e2f-aa1b-4667-a4b4-b4a14d5438e6.rna_seq.transcriptome.gdc_realn.bam 12998677832 BAM transcriptome harmonized CPTAC3 13ac70e8-42cc-4733-891d-008e6a02d22e a4d00e8c3913080383c6c18014fadc17 { 'aliquot_tag': 'ALQ_1edf5b37', 'gdc_sample_type': 'Primary Tumor' } C3N-03006.WGS.N C3N-03006 PDA WGS blood_normal CPT0226560002 CPT0226560002.WholeGenome.RP-1303.bam 61553450356 BAM aligned CPTAC3 63d7cc46-f4f5-475f-aef9-7d507d954ec0 643a38365109b8959fd7f3cda0490668 { 'aliquot_tag': 'ALQ_26474033', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03006.WGS.N.hg38 C3N-03006 PDA WGS blood_normal CPT0226560002 3e7802fb-6c5a-401a-a96b-b4841658da68_wgs_gdc_realn.bam 90395514592 BAM harmonized CPTAC3 46a065d1-0954-45b5-8841-c4fcee9123ee ee267514eaae5045ed8fb86313731a5f { 'aliquot_tag': 'ALQ_26474033', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33833,9 +36099,9 @@ C3N-03007.MethArray.Red.T C3N-03007 PDA Methylation Array tumor CPT0226570013 20 C3N-03007.miRNA-Seq.T C3N-03007 PDA miRNA-Seq tumor CPT0226570010 190813_UNC32-K00270_0196_AH5MCWBBXY_CAAAAG_S13_L003_R1_001.unaln.bam 278175739 BAM unaligned CPTAC3 5c651f4a-468a-4a8f-bbcf-8f2420b371fe a7ee02eb2b8265329d970afb8a3d39ee { 'aliquot_tag': 'ALQ_ec3239ee', 'gdc_sample_type': 'Primary Tumor' } C3N-03007.miRNA-Seq.T.hg38 C3N-03007 PDA miRNA-Seq tumor CPT0226570010 af81d130-156c-49b8-9f30-a388d635207e_mirnaseq_gdc_realn.bam 310069264 BAM harmonized CPTAC3 136bfbc4-ef3f-4010-b8ca-1ddeaa1fad7d 640991e8b3fa9c3d45b9c71a4697506a { 'aliquot_tag': 'ALQ_ec3239ee', 'gdc_sample_type': 'Primary Tumor' } C3N-03007.RNA-Seq.chimeric.T.hg38 C3N-03007 PDA RNA-Seq tumor CPT0226570010 45f898b9-5bf1-4e5d-af64-adc87803cc56.rna_seq.chimeric.gdc_realn.bam 40934806 BAM chimeric harmonized CPTAC3 79b78562-731f-4875-b89a-6f56d579dd82 a8492f69967009b49e5ce5381c2bd309 { 'aliquot_tag': 'ALQ_ec3239ee', 'gdc_sample_type': 'Primary Tumor' } -C3N-03007.RNA-Seq.genomic.T.hg38 C3N-03007 PDA RNA-Seq tumor CPT0226570010 45f898b9-5bf1-4e5d-af64-adc87803cc56.rna_seq.genomic.gdc_realn.bam 7527753144 BAM genomic harmonized CPTAC3 6230244c-5805-48d4-a405-9365650d2b47 26fcb90368c1a0b5e2016d349c9efc95 { 'aliquot_tag': 'ALQ_ec3239ee', 'gdc_sample_type': 'Primary Tumor' } -C3N-03007.RNA-Seq.R1_L007.T C3N-03007 PDA RNA-Seq tumor CPT0226570010 190702_UNC32-K00270_0187_AH7FK2BBXY_TAATACAG-ATATTCAC_S23_L007_R1_001.fastq.gz 3614116156 FASTQ R1_L007 unaligned CPTAC3 38fb3cc4-43a4-4536-8370-94a0ab4538cf d892d6b98224dd4e2cb41a2f7912270e { 'aliquot_tag': 'ALQ_ec3239ee', 'gdc_sample_type': 'Primary Tumor' } -C3N-03007.RNA-Seq.R2_L007.T C3N-03007 PDA RNA-Seq tumor CPT0226570010 190702_UNC32-K00270_0187_AH7FK2BBXY_TAATACAG-ATATTCAC_S23_L007_R2_001.fastq.gz 3904736055 FASTQ R2_L007 unaligned CPTAC3 660046b6-72a3-4f00-9bec-bbc666a277fe 32bf3b3d662a70c7c0807766999edf17 { 'aliquot_tag': 'ALQ_ec3239ee', 'gdc_sample_type': 'Primary Tumor' } +C3N-03007.RNA-Seq.genomic.T.hg38 C3N-03007 PDA RNA-Seq tumor CPT0226570010 45f898b9-5bf1-4e5d-af64-adc87803cc56.rna_seq.genomic.gdc_realn.bam 7527753144 BAM genomic harmonized CPTAC3 34cd1a8a-2d7f-48f6-a876-1c791c43d260 26fcb90368c1a0b5e2016d349c9efc95 { 'aliquot_tag': 'ALQ_ec3239ee', 'gdc_sample_type': 'Primary Tumor' } +C3N-03007.RNA-Seq.R1_L007.T C3N-03007 PDA RNA-Seq tumor CPT0226570010 190702_UNC32-K00270_0187_AH7FK2BBXY_TAATACAG-ATATTCAC_S23_L007_R1_001.fastq.gz 3614116156 FASTQ R1_L007 unaligned CPTAC3 38fb3cc4-43a4-4536-8370-94a0ab4538cf d892d6b98224dd4e2cb41a2f7912270e { 'aliquot_tag': 'ALQ_ec3239ee', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03007.RNA-Seq.R2_L007.T C3N-03007 PDA RNA-Seq tumor CPT0226570010 190702_UNC32-K00270_0187_AH7FK2BBXY_TAATACAG-ATATTCAC_S23_L007_R2_001.fastq.gz 3904736055 FASTQ R2_L007 unaligned CPTAC3 660046b6-72a3-4f00-9bec-bbc666a277fe 32bf3b3d662a70c7c0807766999edf17 { 'aliquot_tag': 'ALQ_ec3239ee', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-03007.RNA-Seq.transcriptome.T.hg38 C3N-03007 PDA RNA-Seq tumor CPT0226570010 45f898b9-5bf1-4e5d-af64-adc87803cc56.rna_seq.transcriptome.gdc_realn.bam 11064023979 BAM transcriptome harmonized CPTAC3 3e7a820b-cfc0-4061-8a22-b306896a920f 06a72f990824e588d2ccbb379075989b { 'aliquot_tag': 'ALQ_ec3239ee', 'gdc_sample_type': 'Primary Tumor' } C3N-03007.WGS.N C3N-03007 PDA WGS blood_normal CPT0226590002 CPT0226590002.WholeGenome.RP-1303.bam 90965485437 BAM aligned CPTAC3 bea3a2cb-4ad8-43b3-8789-be4559224df8 b2785d00f753988212f0c86267397397 { 'aliquot_tag': 'ALQ_a417d7e2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03007.WGS.N.hg38 C3N-03007 PDA WGS blood_normal CPT0226590002 06feccc3-afda-4eb1-91bc-ae59081d8339_wgs_gdc_realn.bam 132571791273 BAM harmonized CPTAC3 9e54b6e9-adfe-423a-b41f-693f408088e5 9acb00594c1f66135f5a0b63be167e85 { 'aliquot_tag': 'ALQ_a417d7e2', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33850,12 +36116,15 @@ C3N-03008.MethArray.Red.T C3N-03008 HNSCC Methylation Array tumor CPT0245010009 C3N-03008.miRNA-Seq.T C3N-03008 HNSCC miRNA-Seq tumor CPT0245010006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTCCGC_S18_L005_R1_001.unaln.bam 236954204 BAM unaligned CPTAC3 54d0c9ee-c935-4690-8217-3d2014d8e5dc 5941a653eea0306f48ca8e21cd0774f9 { 'aliquot_tag': 'ALQ_3440da93', 'gdc_sample_type': 'Primary Tumor' } C3N-03008.miRNA-Seq.T.hg38 C3N-03008 HNSCC miRNA-Seq tumor CPT0245010006 ccfa82a2-b9db-4804-a14b-273a7859ee90_mirnaseq_gdc_realn.bam 265700251 BAM harmonized CPTAC3 c692350f-19b7-4eeb-995c-c6652722bf2b cbf0ae1296b309c66ed42f2a556c8ad3 { 'aliquot_tag': 'ALQ_3440da93', 'gdc_sample_type': 'Primary Tumor' } C3N-03008.RNA-Seq.chimeric.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 5ac381cb-b71e-4436-96b8-1582b0fbcfd2.rna_seq.chimeric.gdc_realn.bam 27987332 BAM chimeric harmonized CPTAC3 de0ae0e8-fce1-45bb-9b3c-de8ff9f87782 fea522a51882c4b39f16b32728c03f10 { 'aliquot_tag': 'ALQ_3440da93', 'gdc_sample_type': 'Primary Tumor' } -C3N-03008.RNA-Seq.genomic.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 5ac381cb-b71e-4436-96b8-1582b0fbcfd2.rna_seq.genomic.gdc_realn.bam 7753794291 BAM genomic harmonized CPTAC3 b8db8e03-ac7a-42ef-bde5-4f7bacabb567 bd1695c02e4249e0dae2e74a17d17c29 { 'aliquot_tag': 'ALQ_3440da93', 'gdc_sample_type': 'Primary Tumor' } -C3N-03008.RNA-Seq.R1_L007.T C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 190411_UNC31-K00269_0208_BH3W3KBBXY_CGGCGTGA-GCGCCTGT_S30_L007_R1_001.fastq.gz 3587409141 FASTQ R1_L007 unaligned CPTAC3 0e8ce9ca-95c9-4acc-81e1-22122cb29d9e e302a9a0583d2705d1b3e562f4abdd34 { 'aliquot_tag': 'ALQ_3440da93', 'gdc_sample_type': 'Primary Tumor' } -C3N-03008.RNA-Seq.R1_.T C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 20210714_P1_C7_WB7988_plate1_S31_R1_001.fastq.gz 4982943277 FASTQ R1_ unaligned CPTAC3 8ca6d9ed-a4b3-487e-b876-f64687a85ce7 1f2a1852982a506822cc9a3850a1848d { 'aliquot_tag': 'ALQ_5d38e493', 'gdc_sample_type': 'Primary Tumor' } -C3N-03008.RNA-Seq.R2_L007.T C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 190411_UNC31-K00269_0208_BH3W3KBBXY_CGGCGTGA-GCGCCTGT_S30_L007_R2_001.fastq.gz 4115598796 FASTQ R2_L007 unaligned CPTAC3 89e20074-6f16-4241-a848-988bf99d0aae 0171f56977fe96d3590f7f6905e27b60 { 'aliquot_tag': 'ALQ_3440da93', 'gdc_sample_type': 'Primary Tumor' } -C3N-03008.RNA-Seq.R2_.T C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 20210714_P1_C7_WB7988_plate1_S31_R2_001.fastq.gz 5139794458 FASTQ R2_ unaligned CPTAC3 e8d8e7e6-8114-4970-ad66-fc1078ba5cac 2f447edad95a036baf3a8025e270b510 { 'aliquot_tag': 'ALQ_5d38e493', 'gdc_sample_type': 'Primary Tumor' } +C3N-03008.RNA-Seq.chimeric.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 e11daef0-5e35-4f08-91af-134d152dc2cc.rna_seq.chimeric.gdc_realn.bam 149384848 BAM chimeric harmonized CPTAC3 900c73a2-de11-4c0f-bbc6-25f3ae4cafc5 7e6108de83f51de087dbfc9132f925a6 { 'aliquot_tag': 'ALQ_5d38e493', 'gdc_sample_type': 'Primary Tumor' } +C3N-03008.RNA-Seq.genomic.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 5ac381cb-b71e-4436-96b8-1582b0fbcfd2.rna_seq.genomic.gdc_realn.bam 7753794291 BAM genomic harmonized CPTAC3 38589697-693c-42db-8a9c-0e17f0f64920 bd1695c02e4249e0dae2e74a17d17c29 { 'aliquot_tag': 'ALQ_3440da93', 'gdc_sample_type': 'Primary Tumor' } +C3N-03008.RNA-Seq.genomic.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 e11daef0-5e35-4f08-91af-134d152dc2cc.rna_seq.genomic.gdc_realn.bam 7695246783 BAM genomic harmonized CPTAC3 44565a7e-1573-4f44-86f4-9fb99f08dafc b17a7cdb9db5a678a9f82c88a8f4fc5b { 'aliquot_tag': 'ALQ_5d38e493', 'gdc_sample_type': 'Primary Tumor' } +C3N-03008.RNA-Seq.R1_L007.T C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 190411_UNC31-K00269_0208_BH3W3KBBXY_CGGCGTGA-GCGCCTGT_S30_L007_R1_001.fastq.gz 3587409141 FASTQ R1_L007 unaligned CPTAC3 0e8ce9ca-95c9-4acc-81e1-22122cb29d9e e302a9a0583d2705d1b3e562f4abdd34 { 'aliquot_tag': 'ALQ_3440da93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03008.RNA-Seq.R2_L007.T C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 190411_UNC31-K00269_0208_BH3W3KBBXY_CGGCGTGA-GCGCCTGT_S30_L007_R2_001.fastq.gz 4115598796 FASTQ R2_L007 unaligned CPTAC3 89e20074-6f16-4241-a848-988bf99d0aae 0171f56977fe96d3590f7f6905e27b60 { 'aliquot_tag': 'ALQ_3440da93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03008.RNA-Seq.T C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 20210714_P1_C7_WB7988_plate1_S31_R1_001.fastq.gz 4982943277 FASTQ unaligned CPTAC3 8ca6d9ed-a4b3-487e-b876-f64687a85ce7 1f2a1852982a506822cc9a3850a1848d +C3N-03008.RNA-Seq.T C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 20210714_P1_C7_WB7988_plate1_S31_R2_001.fastq.gz 5139794458 FASTQ unaligned CPTAC3 e8d8e7e6-8114-4970-ad66-fc1078ba5cac 2f447edad95a036baf3a8025e270b510 C3N-03008.RNA-Seq.transcriptome.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0245010006 5ac381cb-b71e-4436-96b8-1582b0fbcfd2.rna_seq.transcriptome.gdc_realn.bam 11551834441 BAM transcriptome harmonized CPTAC3 40a3842f-462f-491b-a60f-2fe084448db3 26515b341384ec06db0d8a351db0bd43 { 'aliquot_tag': 'ALQ_3440da93', 'gdc_sample_type': 'Primary Tumor' } +C3N-03008.RNA-Seq.transcriptome.T.hg38 C3N-03008 HNSCC RNA-Seq tumor CPT0315130011 e11daef0-5e35-4f08-91af-134d152dc2cc.rna_seq.transcriptome.gdc_realn.bam 4515465903 BAM transcriptome harmonized CPTAC3 a12aa71c-d071-4790-a31c-8fcdf15fd36a a1c154de6260375b136d569e9070b606 { 'aliquot_tag': 'ALQ_5d38e493', 'gdc_sample_type': 'Primary Tumor' } C3N-03008.WGS.N C3N-03008 HNSCC WGS blood_normal CPT0245050002 CPT0245050002.WholeGenome.RP-1303.bam 73019043461 BAM aligned CPTAC3 4934bd05-d9ee-4aae-99e8-556fbf7c50ca 85122749f63c1d0b45a8e0a39b4ca665 { 'aliquot_tag': 'ALQ_c6adb84a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03008.WGS.N.hg38 C3N-03008 HNSCC WGS blood_normal CPT0245050002 53a06935-8741-489c-96b7-746a3038c7aa_wgs_gdc_realn.bam 106357939544 BAM harmonized CPTAC3 5a516ede-33b0-42b4-a6c2-8b82ba9ed60b c2a97e5dffc410d144a8c8899322cf1b { 'aliquot_tag': 'ALQ_c6adb84a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03008.WGS.T C3N-03008 HNSCC WGS tumor CPT0245010009 CPT0245010009.WholeGenome.RP-1303.bam 75485035554 BAM aligned CPTAC3 f0b6a63f-ed37-4abf-a460-dd791c878255 78db113c492dea4616e79fc6a8c34da8 { 'aliquot_tag': 'ALQ_a4ffc702', 'gdc_sample_type': 'Primary Tumor' } @@ -33869,9 +36138,9 @@ C3N-03009.MethArray.Red.T C3N-03009 HNSCC Methylation Array tumor CPT0245060010 C3N-03009.miRNA-Seq.T C3N-03009 HNSCC miRNA-Seq tumor CPT0245060007 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGAAA_S19_L005_R1_001.unaln.bam 234912586 BAM unaligned CPTAC3 b5229a46-623d-49d0-ab0f-52386b87cb8b 301824079e6c9ecfe69a84c5e8490241 { 'aliquot_tag': 'ALQ_f1673615', 'gdc_sample_type': 'Primary Tumor' } C3N-03009.miRNA-Seq.T.hg38 C3N-03009 HNSCC miRNA-Seq tumor CPT0245060007 3fe0b818-da8b-48e8-988e-2f30b7e567ae_mirnaseq_gdc_realn.bam 265313300 BAM harmonized CPTAC3 39689338-99da-4b39-9a6a-d42466c55a01 4e024aeb3560b652bc96118e0628f3f9 { 'aliquot_tag': 'ALQ_f1673615', 'gdc_sample_type': 'Primary Tumor' } C3N-03009.RNA-Seq.chimeric.T.hg38 C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 178c6c17-aeaa-4663-949f-8ddd2ddfe282.rna_seq.chimeric.gdc_realn.bam 41489644 BAM chimeric harmonized CPTAC3 412f735f-ce32-474a-92f2-9b884a2f235a 0fce858fe05f4b9466a9c4ea53ab69cd { 'aliquot_tag': 'ALQ_f1673615', 'gdc_sample_type': 'Primary Tumor' } -C3N-03009.RNA-Seq.genomic.T.hg38 C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 178c6c17-aeaa-4663-949f-8ddd2ddfe282.rna_seq.genomic.gdc_realn.bam 9752931356 BAM genomic harmonized CPTAC3 1499411d-aaf9-4f8f-9b57-2820c523c87a 90308caa58fe9b4041628f687397d2f1 { 'aliquot_tag': 'ALQ_f1673615', 'gdc_sample_type': 'Primary Tumor' } -C3N-03009.RNA-Seq.R1_L007.T C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGTAAGT-ACTCTATG_S31_L007_R1_001.fastq.gz 4512753317 FASTQ R1_L007 unaligned CPTAC3 c354fbe3-7b40-4676-a5dc-3fe883b88172 323341e8adae61706608eed64e5bc2fc { 'aliquot_tag': 'ALQ_f1673615', 'gdc_sample_type': 'Primary Tumor' } -C3N-03009.RNA-Seq.R2_L007.T C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGTAAGT-ACTCTATG_S31_L007_R2_001.fastq.gz 5041716224 FASTQ R2_L007 unaligned CPTAC3 4a882e0c-9422-4179-8107-7021717d674a e65153c5abecf65626a7e6a5f4b06404 { 'aliquot_tag': 'ALQ_f1673615', 'gdc_sample_type': 'Primary Tumor' } +C3N-03009.RNA-Seq.genomic.T.hg38 C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 178c6c17-aeaa-4663-949f-8ddd2ddfe282.rna_seq.genomic.gdc_realn.bam 9752931356 BAM genomic harmonized CPTAC3 19c6bd74-3bd3-4a9b-a5cb-0af4c74af768 90308caa58fe9b4041628f687397d2f1 { 'aliquot_tag': 'ALQ_f1673615', 'gdc_sample_type': 'Primary Tumor' } +C3N-03009.RNA-Seq.R1_L007.T C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGTAAGT-ACTCTATG_S31_L007_R1_001.fastq.gz 4512753317 FASTQ R1_L007 unaligned CPTAC3 c354fbe3-7b40-4676-a5dc-3fe883b88172 323341e8adae61706608eed64e5bc2fc { 'aliquot_tag': 'ALQ_f1673615', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03009.RNA-Seq.R2_L007.T C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGTAAGT-ACTCTATG_S31_L007_R2_001.fastq.gz 5041716224 FASTQ R2_L007 unaligned CPTAC3 4a882e0c-9422-4179-8107-7021717d674a e65153c5abecf65626a7e6a5f4b06404 { 'aliquot_tag': 'ALQ_f1673615', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-03009.RNA-Seq.transcriptome.T.hg38 C3N-03009 HNSCC RNA-Seq tumor CPT0245060007 178c6c17-aeaa-4663-949f-8ddd2ddfe282.rna_seq.transcriptome.gdc_realn.bam 12710443574 BAM transcriptome harmonized CPTAC3 d7533ea7-145d-453b-b9fa-cc5377c3e043 dc775e9cf314cd0dfcaf62e777ae59da { 'aliquot_tag': 'ALQ_f1673615', 'gdc_sample_type': 'Primary Tumor' } C3N-03009.WGS.N C3N-03009 HNSCC WGS blood_normal CPT0245120002 CPT0245120002.WholeGenome.RP-1303.bam 67890003502 BAM aligned CPTAC3 d232340d-265a-4cd9-b70c-11f40a3e0bd2 2bacce0b6ee3a8715b607b72af573716 { 'aliquot_tag': 'ALQ_bfd1b7ff', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03009.WGS.N.hg38 C3N-03009 HNSCC WGS blood_normal CPT0245120002 37895c79-b9a4-477b-944f-4b6bc6ba35fa_wgs_gdc_realn.bam 98582346407 BAM harmonized CPTAC3 e9de8143-0b87-47d8-bded-e64cc9dcf296 0d0c1bb5dfc741f47563c19449d8d5c3 { 'aliquot_tag': 'ALQ_bfd1b7ff', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33887,8 +36156,8 @@ C3N-03011.miRNA-Seq.T C3N-03011 HNSCC miRNA-Seq tumor CPT0226250010 190228_UNC32 C3N-03011.miRNA-Seq.T.hg38 C3N-03011 HNSCC miRNA-Seq tumor CPT0226250010 e7f427f6-091d-431b-945f-12851033aa2e_mirnaseq_gdc_realn.bam 337309315 BAM harmonized CPTAC3 b4dd6558-52bc-468d-aa1a-e14faf364dcd 99b91e6a7ac281e870cca97c4899e95c { 'aliquot_tag': 'ALQ_8bf75a36', 'gdc_sample_type': 'Primary Tumor' } C3N-03011.RNA-Seq.chimeric.T.hg38 C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 f56b3e61-c601-43b4-bed6-449051d2dde1.rna_seq.chimeric.gdc_realn.bam 173068997 BAM chimeric harmonized CPTAC3 1eaba20e-a1fc-4667-afe9-9fd369c53c4c 8692aeb0b5cb4f553b06124515402a19 { 'aliquot_tag': 'ALQ_8bf75a36', 'gdc_sample_type': 'Primary Tumor' } C3N-03011.RNA-Seq.genomic.T.hg38 C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 f56b3e61-c601-43b4-bed6-449051d2dde1.rna_seq.genomic.gdc_realn.bam 8793820542 BAM genomic harmonized CPTAC3 84bfafc7-d3f6-4b63-a34a-20d1ecd93802 ccf53cb58793e344502a5d91e1e2bbdb { 'aliquot_tag': 'ALQ_8bf75a36', 'gdc_sample_type': 'Primary Tumor' } -C3N-03011.RNA-Seq.R1_L007.T C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 190320_UNC31-K00269_0200_BH5CF5BBXY_GAGTGG_S27_L007_R1_001.fastq.gz 4224615040 FASTQ R1_L007 unaligned CPTAC3 bb7fe347-537b-46b3-b300-ea9d775f716a a235337a5262643de52c065b8d94b112 { 'aliquot_tag': 'ALQ_8bf75a36', 'gdc_sample_type': 'Primary Tumor' } -C3N-03011.RNA-Seq.R2_L007.T C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 190320_UNC31-K00269_0200_BH5CF5BBXY_GAGTGG_S27_L007_R2_001.fastq.gz 4739667298 FASTQ R2_L007 unaligned CPTAC3 7b932eed-671e-4b27-89df-8e0357a925c1 9b2b764661a776b14e36b83980eaf75a { 'aliquot_tag': 'ALQ_8bf75a36', 'gdc_sample_type': 'Primary Tumor' } +C3N-03011.RNA-Seq.R1_L007.T C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 190320_UNC31-K00269_0200_BH5CF5BBXY_GAGTGG_S27_L007_R1_001.fastq.gz 4224615040 FASTQ R1_L007 unaligned CPTAC3 bb7fe347-537b-46b3-b300-ea9d775f716a a235337a5262643de52c065b8d94b112 { 'aliquot_tag': 'ALQ_8bf75a36', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03011.RNA-Seq.R2_L007.T C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 190320_UNC31-K00269_0200_BH5CF5BBXY_GAGTGG_S27_L007_R2_001.fastq.gz 4739667298 FASTQ R2_L007 unaligned CPTAC3 7b932eed-671e-4b27-89df-8e0357a925c1 9b2b764661a776b14e36b83980eaf75a { 'aliquot_tag': 'ALQ_8bf75a36', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-03011.RNA-Seq.transcriptome.T.hg38 C3N-03011 HNSCC RNA-Seq tumor CPT0226250010 f56b3e61-c601-43b4-bed6-449051d2dde1.rna_seq.transcriptome.gdc_realn.bam 11011905177 BAM transcriptome harmonized CPTAC3 afac5f5a-fb19-4a4f-9d43-e469b3f023ed 3d19d7eff86f85b94d2119f5f3770eb3 { 'aliquot_tag': 'ALQ_8bf75a36', 'gdc_sample_type': 'Primary Tumor' } C3N-03011.WGS.N C3N-03011 HNSCC WGS blood_normal CPT0226330002 CPT0226330002.WholeGenome.RP-1303.bam 63021848996 BAM aligned CPTAC3 1fe8a988-3b5e-4c6e-ae78-206f6b34eb53 85e7657fafb58c064bce39a2226b41b3 { 'aliquot_tag': 'ALQ_38fe2c5e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03011.WGS.N.hg38 C3N-03011 HNSCC WGS blood_normal CPT0226330002 aef40198-603b-421a-a1e1-e4522062473d_wgs_gdc_realn.bam 89998351315 BAM harmonized CPTAC3 0d675519-2a71-4a42-a87d-3a5713992399 d3819146d0821bcf2b128a8f25c53314 { 'aliquot_tag': 'ALQ_38fe2c5e', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33903,12 +36172,15 @@ C3N-03012.MethArray.Red.T C3N-03012 HNSCC Methylation Array tumor CPT0226340006 C3N-03012.miRNA-Seq.T C3N-03012 HNSCC miRNA-Seq tumor CPT0226340009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L004_R1_001.unaln.bam 245792823 BAM unaligned CPTAC3 1d1b652b-7d8c-4b28-8b97-f47754afa7d1 c59b8cc4d2f6142584a9ed973a89773a { 'aliquot_tag': 'ALQ_1d0c29c6', 'gdc_sample_type': 'Primary Tumor' } C3N-03012.miRNA-Seq.T.hg38 C3N-03012 HNSCC miRNA-Seq tumor CPT0226340009 b33ee650-4a8c-4265-8db9-b20902b90b4c_mirnaseq_gdc_realn.bam 275644427 BAM harmonized CPTAC3 f7284c1b-75ec-4412-aa25-536b8c67e7ce 5e921b1c609d363bffdfff5ce6993733 { 'aliquot_tag': 'ALQ_1d0c29c6', 'gdc_sample_type': 'Primary Tumor' } C3N-03012.RNA-Seq.chimeric.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 2de91600-2e58-445d-b913-73cd12887c67.rna_seq.chimeric.gdc_realn.bam 114614364 BAM chimeric harmonized CPTAC3 7d601f82-93a1-49fe-845a-df4aabf56ce4 f1bbb75341a2a5b0909281c177b80057 { 'aliquot_tag': 'ALQ_1d0c29c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-03012.RNA-Seq.chimeric.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 a7e2f852-f158-43aa-8cda-c928b932bc3b.rna_seq.chimeric.gdc_realn.bam 151799251 BAM chimeric harmonized CPTAC3 bd2fb781-f156-4637-aee9-1e77f4195dcb 4264bc7c4e0b3e80084af08705724163 { 'aliquot_tag': 'ALQ_e6ccbf8d', 'gdc_sample_type': 'Primary Tumor' } C3N-03012.RNA-Seq.genomic.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 2de91600-2e58-445d-b913-73cd12887c67.rna_seq.genomic.gdc_realn.bam 8039228848 BAM genomic harmonized CPTAC3 a9aec893-5323-49e1-a62b-10415ee936d8 cf4c26380afc717d1b2c8d047c01d638 { 'aliquot_tag': 'ALQ_1d0c29c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-03012.RNA-Seq.R1_L007.T C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 190320_UNC31-K00269_0200_BH5CF5BBXY_ACTGAT_S26_L007_R1_001.fastq.gz 3862676144 FASTQ R1_L007 unaligned CPTAC3 7b8853a3-68e3-423b-9a17-e79552c94df5 66dfd71d25f682310b4d933699bceead { 'aliquot_tag': 'ALQ_1d0c29c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-03012.RNA-Seq.R1_.T C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 20210729_P3_D3_WB7988-Plate3_S39_R1_001.fastq.gz 6530123630 FASTQ R1_ unaligned CPTAC3 599c4cf8-e153-4ff3-b1d4-0a34d09888f9 a3718daff1eeb2db0908108ed3835109 { 'aliquot_tag': 'ALQ_e6ccbf8d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03012.RNA-Seq.R2_L007.T C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 190320_UNC31-K00269_0200_BH5CF5BBXY_ACTGAT_S26_L007_R2_001.fastq.gz 4306540242 FASTQ R2_L007 unaligned CPTAC3 eec11126-0d63-40cf-80b0-eac8fd03223f 5f8a0044760ac0c8c417b2d9b5183e06 { 'aliquot_tag': 'ALQ_1d0c29c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-03012.RNA-Seq.R2_.T C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 20210729_P3_D3_WB7988-Plate3_S39_R2_001.fastq.gz 6736363842 FASTQ R2_ unaligned CPTAC3 00d8164d-181a-4bc8-9b44-bac9de3dc8a4 e3b33b4b4eb4b8d6f9f356b3ea980334 { 'aliquot_tag': 'ALQ_e6ccbf8d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03012.RNA-Seq.genomic.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 a7e2f852-f158-43aa-8cda-c928b932bc3b.rna_seq.genomic.gdc_realn.bam 10327327140 BAM genomic harmonized CPTAC3 59bb04fc-5b35-4493-a49f-8629e00a46d4 ab70dd034f6931713d9eeadf91cc94da { 'aliquot_tag': 'ALQ_e6ccbf8d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03012.RNA-Seq.R1_L007.T C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 190320_UNC31-K00269_0200_BH5CF5BBXY_ACTGAT_S26_L007_R1_001.fastq.gz 3862676144 FASTQ R1_L007 unaligned CPTAC3 7b8853a3-68e3-423b-9a17-e79552c94df5 66dfd71d25f682310b4d933699bceead { 'aliquot_tag': 'ALQ_1d0c29c6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03012.RNA-Seq.R2_L007.T C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 190320_UNC31-K00269_0200_BH5CF5BBXY_ACTGAT_S26_L007_R2_001.fastq.gz 4306540242 FASTQ R2_L007 unaligned CPTAC3 eec11126-0d63-40cf-80b0-eac8fd03223f 5f8a0044760ac0c8c417b2d9b5183e06 { 'aliquot_tag': 'ALQ_1d0c29c6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03012.RNA-Seq.T C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 20210729_P3_D3_WB7988-Plate3_S39_R1_001.fastq.gz 6530123630 FASTQ unaligned CPTAC3 599c4cf8-e153-4ff3-b1d4-0a34d09888f9 a3718daff1eeb2db0908108ed3835109 +C3N-03012.RNA-Seq.T C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 20210729_P3_D3_WB7988-Plate3_S39_R2_001.fastq.gz 6736363842 FASTQ unaligned CPTAC3 00d8164d-181a-4bc8-9b44-bac9de3dc8a4 e3b33b4b4eb4b8d6f9f356b3ea980334 C3N-03012.RNA-Seq.transcriptome.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0226340009 2de91600-2e58-445d-b913-73cd12887c67.rna_seq.transcriptome.gdc_realn.bam 12118738451 BAM transcriptome harmonized CPTAC3 2ec5a42e-0b0a-4106-a513-85b680695b41 47ebf792360e069e75ad5cffd52700e6 { 'aliquot_tag': 'ALQ_1d0c29c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-03012.RNA-Seq.transcriptome.T.hg38 C3N-03012 HNSCC RNA-Seq tumor CPT0315220011 a7e2f852-f158-43aa-8cda-c928b932bc3b.rna_seq.transcriptome.gdc_realn.bam 7466501110 BAM transcriptome harmonized CPTAC3 55971f64-9bea-44f8-ada4-d1b8edbcaede 70e7bf6d5969f2fc478ff498ea457a23 { 'aliquot_tag': 'ALQ_e6ccbf8d', 'gdc_sample_type': 'Primary Tumor' } C3N-03012.WGS.N C3N-03012 HNSCC WGS blood_normal CPT0226380002 CPT0226380002.WholeGenome.RP-1303.bam 93790005406 BAM aligned CPTAC3 4b27cd8e-5873-4157-b200-ab2001c1cba6 dece6010de2d96bb08a9dc42a266ab2b { 'aliquot_tag': 'ALQ_4f2e1d4f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03012.WGS.N.hg38 C3N-03012 HNSCC WGS blood_normal CPT0226380002 ebb5f809-802b-4bf2-a197-f89d4f4b68d8_wgs_gdc_realn.bam 137420742281 BAM harmonized CPTAC3 4504d055-56b9-488f-8a26-3f3332621133 59092809b59557bde07ea9d5857814c0 { 'aliquot_tag': 'ALQ_4f2e1d4f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03012.WGS.T C3N-03012 HNSCC WGS tumor CPT0226340006 CPT0226340006.WholeGenome.RP-1303.bam 67534862404 BAM aligned CPTAC3 fecb45fd-8f3d-4e1e-bac6-c6abbe2b447b 1e26bda8bd3a61e76fe612d7d1ca8e07 { 'aliquot_tag': 'ALQ_8db33457', 'gdc_sample_type': 'Primary Tumor' } @@ -33922,12 +36194,15 @@ C3N-03013.MethArray.Red.T C3N-03013 HNSCC Methylation Array tumor CPT0245130009 C3N-03013.miRNA-Seq.T C3N-03013 HNSCC miRNA-Seq tumor CPT0245130006 190228_UNC32-K00270_0151_AHYLY3BBXX_GTGGCC_S20_L005_R1_001.unaln.bam 312232766 BAM unaligned CPTAC3 32198d13-8711-4e90-b60d-f55ddc222b89 227a1375714acb2737980ea0d3d8605b { 'aliquot_tag': 'ALQ_85dc5a56', 'gdc_sample_type': 'Primary Tumor' } C3N-03013.miRNA-Seq.T.hg38 C3N-03013 HNSCC miRNA-Seq tumor CPT0245130006 d895e6e0-7c21-46e6-acf4-a294b1731269_mirnaseq_gdc_realn.bam 344820238 BAM harmonized CPTAC3 d6bb07f5-805e-46c3-9783-a983e2704caa 4d337536d67a4ad0187c8dc6204c58a8 { 'aliquot_tag': 'ALQ_85dc5a56', 'gdc_sample_type': 'Primary Tumor' } C3N-03013.RNA-Seq.chimeric.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 a47eebc9-3568-4784-a121-886bce7246b8.rna_seq.chimeric.gdc_realn.bam 38885348 BAM chimeric harmonized CPTAC3 3b02cc94-2d50-4a45-b609-4389573950ec cfa26d9e7593a410aa5bf372f901bba8 { 'aliquot_tag': 'ALQ_85dc5a56', 'gdc_sample_type': 'Primary Tumor' } -C3N-03013.RNA-Seq.genomic.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 a47eebc9-3568-4784-a121-886bce7246b8.rna_seq.genomic.gdc_realn.bam 9077154671 BAM genomic harmonized CPTAC3 6b9cf778-5521-466d-9e8a-f1ce74580d86 7fa4b16f8e70c23efcd6645f0ae456e5 { 'aliquot_tag': 'ALQ_85dc5a56', 'gdc_sample_type': 'Primary Tumor' } -C3N-03013.RNA-Seq.R1_L007.T C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 190411_UNC31-K00269_0208_BH3W3KBBXY_GCACGGAC-GTCTCGCA_S32_L007_R1_001.fastq.gz 3926269896 FASTQ R1_L007 unaligned CPTAC3 29dc40f9-75ae-46bb-a172-75cc64acebe9 025d8f5da97924ad3f2aa8c1d3db4765 { 'aliquot_tag': 'ALQ_85dc5a56', 'gdc_sample_type': 'Primary Tumor' } -C3N-03013.RNA-Seq.R1_.T C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 20210714_P1_F7_WB7988_plate1_S67_R1_001.fastq.gz 4826217695 FASTQ R1_ unaligned CPTAC3 65b34fe6-430a-44d4-9762-f30ae63d6a1c e075ec41ce3b7e8f3f11258f25d7b3ea { 'aliquot_tag': 'ALQ_698c4a2d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03013.RNA-Seq.R2_L007.T C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 190411_UNC31-K00269_0208_BH3W3KBBXY_GCACGGAC-GTCTCGCA_S32_L007_R2_001.fastq.gz 4488402215 FASTQ R2_L007 unaligned CPTAC3 a08cd494-e2db-4bc1-9a86-dd02f4a262c1 b0543fffdea94f0f3ca8b03e8f6c3d50 { 'aliquot_tag': 'ALQ_85dc5a56', 'gdc_sample_type': 'Primary Tumor' } -C3N-03013.RNA-Seq.R2_.T C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 20210714_P1_F7_WB7988_plate1_S67_R2_001.fastq.gz 4972986140 FASTQ R2_ unaligned CPTAC3 b14bc543-55fc-4117-95ee-51147d0745b4 6421ff8113569a8972c35a6ded802949 { 'aliquot_tag': 'ALQ_698c4a2d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03013.RNA-Seq.chimeric.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 9c68c943-b7ed-4d55-83f5-2fe66465c54c.rna_seq.chimeric.gdc_realn.bam 137250678 BAM chimeric harmonized CPTAC3 551e487e-dd1e-4c76-bf3e-bafd58d19bad e35147dae10ac8b3dc1b994abab3cbf2 { 'aliquot_tag': 'ALQ_698c4a2d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03013.RNA-Seq.genomic.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 a47eebc9-3568-4784-a121-886bce7246b8.rna_seq.genomic.gdc_realn.bam 9077154671 BAM genomic harmonized CPTAC3 b20b2d42-0573-4f9b-86da-9a05ffea5c27 7fa4b16f8e70c23efcd6645f0ae456e5 { 'aliquot_tag': 'ALQ_85dc5a56', 'gdc_sample_type': 'Primary Tumor' } +C3N-03013.RNA-Seq.genomic.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 9c68c943-b7ed-4d55-83f5-2fe66465c54c.rna_seq.genomic.gdc_realn.bam 7050867541 BAM genomic harmonized CPTAC3 23e85add-cbe5-4f2f-8ec0-5d1948551c9d b552ddd276e8f4ec6863496f0cca7113 { 'aliquot_tag': 'ALQ_698c4a2d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03013.RNA-Seq.R1_L007.T C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 190411_UNC31-K00269_0208_BH3W3KBBXY_GCACGGAC-GTCTCGCA_S32_L007_R1_001.fastq.gz 3926269896 FASTQ R1_L007 unaligned CPTAC3 29dc40f9-75ae-46bb-a172-75cc64acebe9 025d8f5da97924ad3f2aa8c1d3db4765 { 'aliquot_tag': 'ALQ_85dc5a56', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03013.RNA-Seq.R2_L007.T C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 190411_UNC31-K00269_0208_BH3W3KBBXY_GCACGGAC-GTCTCGCA_S32_L007_R2_001.fastq.gz 4488402215 FASTQ R2_L007 unaligned CPTAC3 a08cd494-e2db-4bc1-9a86-dd02f4a262c1 b0543fffdea94f0f3ca8b03e8f6c3d50 { 'aliquot_tag': 'ALQ_85dc5a56', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03013.RNA-Seq.T C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 20210714_P1_F7_WB7988_plate1_S67_R1_001.fastq.gz 4826217695 FASTQ unaligned CPTAC3 65b34fe6-430a-44d4-9762-f30ae63d6a1c e075ec41ce3b7e8f3f11258f25d7b3ea +C3N-03013.RNA-Seq.T C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 20210714_P1_F7_WB7988_plate1_S67_R2_001.fastq.gz 4972986140 FASTQ unaligned CPTAC3 b14bc543-55fc-4117-95ee-51147d0745b4 6421ff8113569a8972c35a6ded802949 C3N-03013.RNA-Seq.transcriptome.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0245130006 a47eebc9-3568-4784-a121-886bce7246b8.rna_seq.transcriptome.gdc_realn.bam 11290210726 BAM transcriptome harmonized CPTAC3 f87af881-1a80-48fc-b414-69372fa466b0 e9d9aa4adc80340df7b909f1f189069a { 'aliquot_tag': 'ALQ_85dc5a56', 'gdc_sample_type': 'Primary Tumor' } +C3N-03013.RNA-Seq.transcriptome.T.hg38 C3N-03013 HNSCC RNA-Seq tumor CPT0315240011 9c68c943-b7ed-4d55-83f5-2fe66465c54c.rna_seq.transcriptome.gdc_realn.bam 5634550585 BAM transcriptome harmonized CPTAC3 54836e0b-18d1-4d15-b9bf-573013c4d28d 75fc0ec44dd9c2576c762aabf70dcc57 { 'aliquot_tag': 'ALQ_698c4a2d', 'gdc_sample_type': 'Primary Tumor' } C3N-03013.WGS.N C3N-03013 HNSCC WGS blood_normal CPT0245170002 CPT0245170002.WholeGenome.RP-1303.bam 69588309348 BAM aligned CPTAC3 e9835e48-a5f3-47d8-9bcf-814221cfbef1 53016add9d6b82c7b82102c2afbc4249 { 'aliquot_tag': 'ALQ_7731388f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03013.WGS.N.hg38 C3N-03013 HNSCC WGS blood_normal CPT0245170002 749a385c-3923-4592-af01-602ef6634c09_wgs_gdc_realn.bam 101852858850 BAM harmonized CPTAC3 f2964a4d-eb71-4944-b53b-0cc98448564c 67ca934792a4f63cd43ddfc678c35514 { 'aliquot_tag': 'ALQ_7731388f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03013.WGS.T C3N-03013 HNSCC WGS tumor CPT0245130009 CPT0245130009.WholeGenome.RP-1303.bam 63655208400 BAM aligned CPTAC3 beaec16a-c3c5-47fb-90d9-308a6879eaef dfd3062cf5bea2b4fd3220c486d9b1c4 { 'aliquot_tag': 'ALQ_156347c7', 'gdc_sample_type': 'Primary Tumor' } @@ -33946,12 +36221,12 @@ C3N-03015.miRNA-Seq.T C3N-03015 HNSCC miRNA-Seq tumor CPT0245180006 190228_UNC32 C3N-03015.miRNA-Seq.T.hg38 C3N-03015 HNSCC miRNA-Seq tumor CPT0245180006 a5dd1237-287a-4d2d-9f90-cc5905e0d35e_mirnaseq_gdc_realn.bam 196721385 BAM harmonized CPTAC3 2dabc817-54f9-4199-87ce-9812b0a202a3 4e70adcd30e032b57e4d012a0371c1e5 { 'aliquot_tag': 'ALQ_f20c6b47', 'gdc_sample_type': 'Primary Tumor' } C3N-03015.RNA-Seq.chimeric.A.hg38 C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 12f3c95d-26ef-47d4-ba42-e8c35cbd7d25.rna_seq.chimeric.gdc_realn.bam 24891000 BAM chimeric harmonized CPTAC3 2661ec62-6626-4040-aa45-8b4df93759a9 6ad57f29eeeece46ac7cb284fb68391f { 'aliquot_tag': 'ALQ_cf6c42f7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03015.RNA-Seq.chimeric.T.hg38 C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 594ab534-9266-4d20-95f4-69e0a5837643.rna_seq.chimeric.gdc_realn.bam 40724757 BAM chimeric harmonized CPTAC3 74cb3e2b-5e8d-4c94-897d-3047df22f857 1da318d800f830cea2d5c464f4a8fe51 { 'aliquot_tag': 'ALQ_f20c6b47', 'gdc_sample_type': 'Primary Tumor' } -C3N-03015.RNA-Seq.genomic.A.hg38 C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 12f3c95d-26ef-47d4-ba42-e8c35cbd7d25.rna_seq.genomic.gdc_realn.bam 6978620064 BAM genomic harmonized CPTAC3 77bb401a-0389-4737-b86a-613cc72b2465 ba406e3cb2e9b3d8137c30f47b893a3f { 'aliquot_tag': 'ALQ_cf6c42f7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03015.RNA-Seq.genomic.T.hg38 C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 594ab534-9266-4d20-95f4-69e0a5837643.rna_seq.genomic.gdc_realn.bam 10934380046 BAM genomic harmonized CPTAC3 9cf21d55-3825-42a0-a69f-2b868d20be73 8c8ddd01f5a6cb6db6c4aab2f488f26e { 'aliquot_tag': 'ALQ_f20c6b47', 'gdc_sample_type': 'Primary Tumor' } -C3N-03015.RNA-Seq.R1_L003.A C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 190416_UNC32-K00270_0165_AH5JY2BBXY_GATTCTGC-GACGAGAG_S12_L003_R1_001.fastq.gz 3338583559 FASTQ R1_L003 unaligned CPTAC3 d0aa4bbe-4978-447b-83de-7c30fead2c41 1d98e79d74cdaec6d7cee4db53267715 { 'aliquot_tag': 'ALQ_cf6c42f7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03015.RNA-Seq.R1_L008.T C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGTACCTT-AAGACGTC_S33_L008_R1_001.fastq.gz 4849498926 FASTQ R1_L008 unaligned CPTAC3 96d2dcaf-0369-42ab-8fad-ea6453fbdbc8 78e586dd958d6cd767adfc4d1aa0323d { 'aliquot_tag': 'ALQ_f20c6b47', 'gdc_sample_type': 'Primary Tumor' } -C3N-03015.RNA-Seq.R2_L003.A C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 190416_UNC32-K00270_0165_AH5JY2BBXY_GATTCTGC-GACGAGAG_S12_L003_R2_001.fastq.gz 3728990244 FASTQ R2_L003 unaligned CPTAC3 eab348fb-e04f-4246-94de-a6094d0dc484 e910ef3c0246c3d9e790cd3d8de43197 { 'aliquot_tag': 'ALQ_cf6c42f7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03015.RNA-Seq.R2_L008.T C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGTACCTT-AAGACGTC_S33_L008_R2_001.fastq.gz 5610026313 FASTQ R2_L008 unaligned CPTAC3 3e139705-ff7a-4715-8a37-f409a23606b4 a77d1adb7f682815dbf0a0eceb930715 { 'aliquot_tag': 'ALQ_f20c6b47', 'gdc_sample_type': 'Primary Tumor' } +C3N-03015.RNA-Seq.genomic.A.hg38 C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 12f3c95d-26ef-47d4-ba42-e8c35cbd7d25.rna_seq.genomic.gdc_realn.bam 6978620064 BAM genomic harmonized CPTAC3 13cee554-168a-45eb-bcb2-8a8085c36ac8 ba406e3cb2e9b3d8137c30f47b893a3f { 'aliquot_tag': 'ALQ_cf6c42f7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03015.RNA-Seq.genomic.T.hg38 C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 594ab534-9266-4d20-95f4-69e0a5837643.rna_seq.genomic.gdc_realn.bam 10934380046 BAM genomic harmonized CPTAC3 1183d130-2edd-4eb8-86ee-0dd9315238a4 8c8ddd01f5a6cb6db6c4aab2f488f26e { 'aliquot_tag': 'ALQ_f20c6b47', 'gdc_sample_type': 'Primary Tumor' } +C3N-03015.RNA-Seq.R1_L003.A C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 190416_UNC32-K00270_0165_AH5JY2BBXY_GATTCTGC-GACGAGAG_S12_L003_R1_001.fastq.gz 3338583559 FASTQ R1_L003 unaligned CPTAC3 d0aa4bbe-4978-447b-83de-7c30fead2c41 1d98e79d74cdaec6d7cee4db53267715 { 'aliquot_tag': 'ALQ_cf6c42f7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03015.RNA-Seq.R1_L008.T C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGTACCTT-AAGACGTC_S33_L008_R1_001.fastq.gz 4849498926 FASTQ R1_L008 unaligned CPTAC3 96d2dcaf-0369-42ab-8fad-ea6453fbdbc8 78e586dd958d6cd767adfc4d1aa0323d { 'aliquot_tag': 'ALQ_f20c6b47', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03015.RNA-Seq.R2_L003.A C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 190416_UNC32-K00270_0165_AH5JY2BBXY_GATTCTGC-GACGAGAG_S12_L003_R2_001.fastq.gz 3728990244 FASTQ R2_L003 unaligned CPTAC3 eab348fb-e04f-4246-94de-a6094d0dc484 e910ef3c0246c3d9e790cd3d8de43197 { 'aliquot_tag': 'ALQ_cf6c42f7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03015.RNA-Seq.R2_L008.T C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGTACCTT-AAGACGTC_S33_L008_R2_001.fastq.gz 5610026313 FASTQ R2_L008 unaligned CPTAC3 3e139705-ff7a-4715-8a37-f409a23606b4 a77d1adb7f682815dbf0a0eceb930715 { 'aliquot_tag': 'ALQ_f20c6b47', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-03015.RNA-Seq.transcriptome.A.hg38 C3N-03015 HNSCC RNA-Seq tissue_normal CPT0245190006 12f3c95d-26ef-47d4-ba42-e8c35cbd7d25.rna_seq.transcriptome.gdc_realn.bam 10851561246 BAM transcriptome harmonized CPTAC3 311ae124-d599-4327-a618-5166d64396b4 ff34e6d2bfe0156ae58ca9a7fa0d76f6 { 'aliquot_tag': 'ALQ_cf6c42f7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03015.RNA-Seq.transcriptome.T.hg38 C3N-03015 HNSCC RNA-Seq tumor CPT0245180006 594ab534-9266-4d20-95f4-69e0a5837643.rna_seq.transcriptome.gdc_realn.bam 15573666604 BAM transcriptome harmonized CPTAC3 69408743-ecc2-4ac8-8a7c-208996db20fb cf55d5aaa3e1bddc669d09ef2308d9a8 { 'aliquot_tag': 'ALQ_f20c6b47', 'gdc_sample_type': 'Primary Tumor' } C3N-03015.WGS.N C3N-03015 HNSCC WGS blood_normal CPT0245220002 CPT0245220002.WholeGenome.RP-1303.bam 71135987800 BAM aligned CPTAC3 efa03691-abe1-4a04-9482-f3a4c6c091e0 ab994bb6ff0e86967d424a573e96d889 { 'aliquot_tag': 'ALQ_3945c551', 'gdc_sample_type': 'Blood Derived Normal' } @@ -33972,16 +36247,16 @@ C3N-03018.miRNA-Seq.A C3N-03018 CCRCC miRNA-Seq tissue_normal CPT0188990006 1902 C3N-03018.miRNA-Seq.A.hg38 C3N-03018 CCRCC miRNA-Seq tissue_normal CPT0188990006 b547a548-1875-4247-b617-921844ff1628_mirnaseq_gdc_realn.bam 270737142 BAM harmonized CPTAC3 121f7f9d-02f9-4eef-835b-2d762c186698 219cb99b0357910482221b394a3be6b2 { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03018.miRNA-Seq.T C3N-03018 CCRCC miRNA-Seq tumor CPT0188980009 190130_UNC31-K00269_0188_BH2FGCBBXY_CCAACA_S36_L005_R1_001.unaln.bam 164701257 BAM unaligned CPTAC3 6fd230c8-5813-40ba-8ad4-5d377c8d2f8d 6810b56821d9ec2e4f1aa3b7c4ef520f { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor' } C3N-03018.miRNA-Seq.T.hg38 C3N-03018 CCRCC miRNA-Seq tumor CPT0188980009 eb92ef42-c4c9-4c6e-ad49-728bad7e52de_mirnaseq_gdc_realn.bam 182223645 BAM harmonized CPTAC3 0ce2451b-6ff8-4ca9-8350-c003620cf9dd 83dd6e07a703d70095ebffe7a8ed71cc { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03018.RNA-Seq.chimeric.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 ac799ce8-6176-4c15-a5de-7672902b1afa.rna_seq.chimeric.gdc_realn.bam 70263015 BAM chimeric harmonized CPTAC3 c014118a-6039-4834-a634-87f1a11157db adf3498a5a6c851da0b5bc7f57eedbc8 { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03018.RNA-Seq.chimeric.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 e93c8a42-483a-4f88-af6c-79d83e4dc74b.rna_seq.chimeric.gdc_realn.bam 29806023 BAM chimeric harmonized CPTAC3 0ef85b16-d2f1-4f1c-b712-02079192efcf 2a084d2d2d7db16a29e749f5f1802397 { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03018.RNA-Seq.genomic.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 ac799ce8-6176-4c15-a5de-7672902b1afa.rna_seq.genomic.gdc_realn.bam 9179656615 BAM genomic harmonized CPTAC3 e3ad213b-6ce4-442f-87ed-9ef2e72fe6b2 ec123e4debcf9c1b72f45807aed706d1 { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03018.RNA-Seq.genomic.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 e93c8a42-483a-4f88-af6c-79d83e4dc74b.rna_seq.genomic.gdc_realn.bam 8105642879 BAM genomic harmonized CPTAC3 47a15afd-6380-4a9d-8d40-abc3d2cccd65 66aa8ad49dc4377e99aa42a12e85cf4e { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03018.RNA-Seq.R1_L004.A C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 190205_UNC32-K00270_0144_BH3M3NBBXY_GCCAAT_S14_L004_R1_001.fastq.gz 4236132263 FASTQ R1_L004 unaligned CPTAC3 1613a36c-b449-4dfc-84c0-78232ff07762 3b6b34f2fc83f96bb665e3abc927feb7 { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03018.RNA-Seq.R1_L007.T C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L007_R1_001.fastq.gz 3885272639 FASTQ R1_L007 unaligned CPTAC3 85813afd-2a5f-446f-a6c8-1b8437cae107 0267eb8ddd25e08d2abb69f2e67c1ff4 { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03018.RNA-Seq.R2_L004.A C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 190205_UNC32-K00270_0144_BH3M3NBBXY_GCCAAT_S14_L004_R2_001.fastq.gz 4713458088 FASTQ R2_L004 unaligned CPTAC3 398979c4-d7d7-47a5-a93d-2fb96fc1ad24 6ba05ed49bd76cb060db74762a2f8da7 { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03018.RNA-Seq.R2_L007.T C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L007_R2_001.fastq.gz 4151472889 FASTQ R2_L007 unaligned CPTAC3 2f149e6d-2235-4629-b132-035a60c2a478 08dc41e8f88a641ea6e7f8e1a0940b61 { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03018.RNA-Seq.transcriptome.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 ac799ce8-6176-4c15-a5de-7672902b1afa.rna_seq.transcriptome.gdc_realn.bam 8907202742 BAM transcriptome harmonized CPTAC3 b9584530-dd74-421e-b19e-4adbfe15eb2e c6b5eab88d35941e20d945a6dfde4266 { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03018.RNA-Seq.transcriptome.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 e93c8a42-483a-4f88-af6c-79d83e4dc74b.rna_seq.transcriptome.gdc_realn.bam 10261687310 BAM transcriptome harmonized CPTAC3 333830dd-de21-49e0-a08c-20ba9c3fba83 3e83a1cefbd973ae35a82ec79fd0b17c { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor' } +C3N-03018.RNA-Seq.chimeric.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 abbb6aa3-3fcf-48a3-a1d7-af73a863a069.rna_seq.chimeric.gdc_realn.bam 70255850 BAM chimeric harmonized CPTAC3 2c897022-33fb-489c-9d6d-57d4fd309357 0117e293dff2dfe318c53540f3b5598d { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03018.RNA-Seq.chimeric.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 47eef62b-8347-474f-9202-13b67d3e2d95.rna_seq.chimeric.gdc_realn.bam 29787632 BAM chimeric harmonized CPTAC3 52f89368-3954-44b1-bff2-f17f316bcae9 5dd715ed624222167aee7d6598303025 { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor' } +C3N-03018.RNA-Seq.genomic.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 abbb6aa3-3fcf-48a3-a1d7-af73a863a069.rna_seq.genomic.gdc_realn.bam 9180576302 BAM genomic harmonized CPTAC3 6e9eb4aa-9ef9-42c6-a9c7-8839174b1360 9e6370cbd0dbad844b41e8cf97337668 { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03018.RNA-Seq.genomic.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 47eef62b-8347-474f-9202-13b67d3e2d95.rna_seq.genomic.gdc_realn.bam 8106249496 BAM genomic harmonized CPTAC3 0f3838ed-c43d-4043-810c-e759e3fb543c 60f4def6eeed0fb16dc82d36c30a9be9 { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor' } +C3N-03018.RNA-Seq.R1_L004.A C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 190205_UNC32-K00270_0144_BH3M3NBBXY_GCCAAT_S14_L004_R1_001.fastq.gz 4236132263 FASTQ R1_L004 unaligned CPTAC3 1613a36c-b449-4dfc-84c0-78232ff07762 3b6b34f2fc83f96bb665e3abc927feb7 { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03018.RNA-Seq.R1_L007.T C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L007_R1_001.fastq.gz 3885272639 FASTQ R1_L007 unaligned CPTAC3 85813afd-2a5f-446f-a6c8-1b8437cae107 0267eb8ddd25e08d2abb69f2e67c1ff4 { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03018.RNA-Seq.R2_L004.A C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 190205_UNC32-K00270_0144_BH3M3NBBXY_GCCAAT_S14_L004_R2_001.fastq.gz 4713458088 FASTQ R2_L004 unaligned CPTAC3 398979c4-d7d7-47a5-a93d-2fb96fc1ad24 6ba05ed49bd76cb060db74762a2f8da7 { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-03018.RNA-Seq.R2_L007.T C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 190123_UNC31-K00269_0183_BH3L7LBBXY_CTTGTA_S4_L007_R2_001.fastq.gz 4151472889 FASTQ R2_L007 unaligned CPTAC3 2f149e6d-2235-4629-b132-035a60c2a478 08dc41e8f88a641ea6e7f8e1a0940b61 { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03018.RNA-Seq.transcriptome.A.hg38 C3N-03018 CCRCC RNA-Seq tissue_normal CPT0188990006 abbb6aa3-3fcf-48a3-a1d7-af73a863a069.rna_seq.transcriptome.gdc_realn.bam 10193831790 BAM transcriptome harmonized CPTAC3 56f4cbe4-9bf7-4882-933b-9e3b77cccf1e f423615adc00b60e861a08920b62d28c { 'aliquot_tag': 'ALQ_2cca88d0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03018.RNA-Seq.transcriptome.T.hg38 C3N-03018 CCRCC RNA-Seq tumor CPT0188980009 47eef62b-8347-474f-9202-13b67d3e2d95.rna_seq.transcriptome.gdc_realn.bam 11698328411 BAM transcriptome harmonized CPTAC3 8440aa70-19b4-4183-bf11-2639a99623bc 78042007da4f5165dc305729376b5d64 { 'aliquot_tag': 'ALQ_8115bcf1', 'gdc_sample_type': 'Primary Tumor' } C3N-03018.WGS.N C3N-03018 CCRCC WGS blood_normal CPT0189020002 CPT0189020002.WholeGenome.RP-1303.bam 144361089803 BAM aligned CPTAC3 daff28dd-a0ba-4a6d-a590-58c68194e5bc cfb593376eaa21bccd35328e5982dc6c { 'aliquot_tag': 'ALQ_dd0f27a4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03018.WGS.N.hg38 C3N-03018 CCRCC WGS blood_normal CPT0189020002 8dea3282-81d6-4bd3-8b68-526f8b69f009_wgs_gdc_realn.bam 206770270686 BAM harmonized CPTAC3 fde130bd-1cda-4ed3-9193-0e580161d7ee f3305e9bcd723399fbaa885661c3ddb9 { 'aliquot_tag': 'ALQ_dd0f27a4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03018.WGS.T C3N-03018 CCRCC WGS tumor CPT0188980011 CPT0188980011.WholeGenome.RP-1303.bam 136196967978 BAM aligned CPTAC3 27535746-028f-434d-9180-94463a74672c 888f697217e9733a805f2abcb8f6ef03 { 'aliquot_tag': 'ALQ_96d50582', 'gdc_sample_type': 'Primary Tumor' } @@ -34000,16 +36275,16 @@ C3N-03019.miRNA-Seq.A C3N-03019 CCRCC miRNA-Seq tissue_normal CPT0189040006 1902 C3N-03019.miRNA-Seq.A.hg38 C3N-03019 CCRCC miRNA-Seq tissue_normal CPT0189040006 bfa1c963-a12e-412a-b243-2a856001b073_mirnaseq_gdc_realn.bam 211802550 BAM harmonized CPTAC3 6860d47c-8315-4593-afaa-e09dcfa80a2d e54b82789a6385e3e0fa3258b42894ed { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03019.miRNA-Seq.T C3N-03019 CCRCC miRNA-Seq tumor CPT0189030009 190130_UNC31-K00269_0188_BH2FGCBBXY_CGGAAT_S37_L005_R1_001.unaln.bam 308961444 BAM unaligned CPTAC3 0e1b5e1b-30e3-459f-a9d7-637845cfefc2 008d1340e275e1f8a3b350d6b4c29bf8 { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor' } C3N-03019.miRNA-Seq.T.hg38 C3N-03019 CCRCC miRNA-Seq tumor CPT0189030009 444dc913-e776-43d0-a143-bc297a8e42f2_mirnaseq_gdc_realn.bam 343732308 BAM harmonized CPTAC3 e933fc99-16da-4453-9504-592014aef4de a5ad143515f366dfff5d1317c5a5449b { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03019.RNA-Seq.chimeric.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 1a71426f-4246-4ca7-951e-5d3428e7f0eb.rna_seq.chimeric.gdc_realn.bam 126665720 BAM chimeric harmonized CPTAC3 2c2d659a-332b-4683-b5c3-557962921239 bdfa5a0754cf9ee90e84766ae7467a3a { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03019.RNA-Seq.chimeric.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 eb323c40-0d15-4aae-9d8f-3c56f88a9624.rna_seq.chimeric.gdc_realn.bam 32318868 BAM chimeric harmonized CPTAC3 46b6ceef-f2cb-4d6d-a662-f5acc49791a0 bca8f40b4bb6426ebb86a3580f52b7a7 { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03019.RNA-Seq.genomic.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 1a71426f-4246-4ca7-951e-5d3428e7f0eb.rna_seq.genomic.gdc_realn.bam 8926164989 BAM genomic harmonized CPTAC3 40e6fae2-def5-4561-b5ec-8909ab99e68d f7e4a6e2f84080808a7422602075e9a3 { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03019.RNA-Seq.genomic.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 eb323c40-0d15-4aae-9d8f-3c56f88a9624.rna_seq.genomic.gdc_realn.bam 7170565002 BAM genomic harmonized CPTAC3 72075062-f9bf-4239-822e-87d32ea435ef fb337d0e468f4a9db46c3ea634acddee { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03019.RNA-Seq.R1_L004.A C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 190205_UNC32-K00270_0144_BH3M3NBBXY_CAGATC_S13_L004_R1_001.fastq.gz 4101502023 FASTQ R1_L004 unaligned CPTAC3 398467bc-30da-4d22-90f2-576c928cc6db 2be95be73a73e746cfaaa88e6cbe6b4b { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03019.RNA-Seq.R1_L008.T C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L008_R1_001.fastq.gz 3570715965 FASTQ R1_L008 unaligned CPTAC3 0101c8bc-d732-400b-85ae-045318f8bec7 226f74cbf04137025b3707d429d4a5e7 { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03019.RNA-Seq.R2_L004.A C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 190205_UNC32-K00270_0144_BH3M3NBBXY_CAGATC_S13_L004_R2_001.fastq.gz 4557784067 FASTQ R2_L004 unaligned CPTAC3 4bdcc52d-a58e-40fe-9bfb-bf62c670e53a 97be6649e9b3772290756b1177e742aa { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03019.RNA-Seq.R2_L008.T C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L008_R2_001.fastq.gz 3781214014 FASTQ R2_L008 unaligned CPTAC3 ad158cb1-d670-4443-898b-6fba5c0c15dd 26f6fda50618646f4ea989f6a6da660f { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03019.RNA-Seq.transcriptome.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 1a71426f-4246-4ca7-951e-5d3428e7f0eb.rna_seq.transcriptome.gdc_realn.bam 8611252396 BAM transcriptome harmonized CPTAC3 ae2feef0-6c50-4fd5-b76b-200777f9ac45 35898554884d87128f97937cd5ed39f5 { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03019.RNA-Seq.transcriptome.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 eb323c40-0d15-4aae-9d8f-3c56f88a9624.rna_seq.transcriptome.gdc_realn.bam 8224338681 BAM transcriptome harmonized CPTAC3 b631533e-9242-4024-9f0a-146755b3f63e ab3b185220f8e2dae9446d7ce00f2d6e { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03019.RNA-Seq.chimeric.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 cd808f88-6e6a-417b-ac16-3f8781904a10.rna_seq.chimeric.gdc_realn.bam 126639952 BAM chimeric harmonized CPTAC3 1e8e363d-0ca5-46ac-a180-4627586fcc43 fef0802587c807bfe64d32d286aae85a { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03019.RNA-Seq.chimeric.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 49891de5-a491-4bac-b45d-1ae65b0c8672.rna_seq.chimeric.gdc_realn.bam 32312102 BAM chimeric harmonized CPTAC3 b451d952-7f90-4845-b9c4-19856f101193 2d7a46728237a1a7954b1bc6ddefc9dc { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03019.RNA-Seq.genomic.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 cd808f88-6e6a-417b-ac16-3f8781904a10.rna_seq.genomic.gdc_realn.bam 8927009207 BAM genomic harmonized CPTAC3 bffbf5b5-c50c-4347-a249-0661043a4050 dbc8cd68786cd7e6d0c2782a7e25856c { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03019.RNA-Seq.genomic.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 49891de5-a491-4bac-b45d-1ae65b0c8672.rna_seq.genomic.gdc_realn.bam 7171496116 BAM genomic harmonized CPTAC3 4f7be28b-43b3-4668-8a77-a1925306a139 0bba3ea2ad050980dfd380bfb491ed4c { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03019.RNA-Seq.R1_L004.A C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 190205_UNC32-K00270_0144_BH3M3NBBXY_CAGATC_S13_L004_R1_001.fastq.gz 4101502023 FASTQ R1_L004 unaligned CPTAC3 398467bc-30da-4d22-90f2-576c928cc6db 2be95be73a73e746cfaaa88e6cbe6b4b { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03019.RNA-Seq.R1_L008.T C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L008_R1_001.fastq.gz 3570715965 FASTQ R1_L008 unaligned CPTAC3 0101c8bc-d732-400b-85ae-045318f8bec7 226f74cbf04137025b3707d429d4a5e7 { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03019.RNA-Seq.R2_L004.A C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 190205_UNC32-K00270_0144_BH3M3NBBXY_CAGATC_S13_L004_R2_001.fastq.gz 4557784067 FASTQ R2_L004 unaligned CPTAC3 4bdcc52d-a58e-40fe-9bfb-bf62c670e53a 97be6649e9b3772290756b1177e742aa { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-03019.RNA-Seq.R2_L008.T C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 190123_UNC31-K00269_0183_BH3L7LBBXY_AGTCAA_S5_L008_R2_001.fastq.gz 3781214014 FASTQ R2_L008 unaligned CPTAC3 ad158cb1-d670-4443-898b-6fba5c0c15dd 26f6fda50618646f4ea989f6a6da660f { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03019.RNA-Seq.transcriptome.A.hg38 C3N-03019 CCRCC RNA-Seq tissue_normal CPT0189040006 cd808f88-6e6a-417b-ac16-3f8781904a10.rna_seq.transcriptome.gdc_realn.bam 9870590259 BAM transcriptome harmonized CPTAC3 4991fcdb-ddfc-41ce-b373-c77719c2f42c 97fbda3db12f3a2742f3d0855fe5764d { 'aliquot_tag': 'ALQ_5522161d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03019.RNA-Seq.transcriptome.T.hg38 C3N-03019 CCRCC RNA-Seq tumor CPT0189030009 49891de5-a491-4bac-b45d-1ae65b0c8672.rna_seq.transcriptome.gdc_realn.bam 9391785021 BAM transcriptome harmonized CPTAC3 9863466f-38d6-4e07-ae87-d6c7ad198a2a 99da1c724dc61d9018803d35a4a9b38e { 'aliquot_tag': 'ALQ_77bdd79c', 'gdc_sample_type': 'Primary Tumor' } C3N-03019.WGS.N C3N-03019 CCRCC WGS blood_normal CPT0189070002 CPT0189070002.WholeGenome.RP-1303.bam 88508002820 BAM aligned CPTAC3 442c40e4-bdf0-4ad0-b053-d3e6c949610e 19598dd4d475afa9e9b972f9444fcbb5 { 'aliquot_tag': 'ALQ_15efa8d4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03019.WGS.N.hg38 C3N-03019 CCRCC WGS blood_normal CPT0189070002 6e1b1c10-87e8-47aa-b657-fbe0dc1fc448_wgs_gdc_realn.bam 127976849743 BAM harmonized CPTAC3 d09ff66c-8341-411d-9f80-1911a54424df 5efcd95ada168ae85f75a0246b102d1e { 'aliquot_tag': 'ALQ_15efa8d4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03019.WGS.T C3N-03019 CCRCC WGS tumor CPT0189030006 CPT0189030006.WholeGenome.RP-1303.bam 95549142318 BAM aligned CPTAC3 f500bf5d-8c92-471b-9cd7-337d81433039 f619166aee212489a022741be11db173 { 'aliquot_tag': 'ALQ_e702ca0d', 'gdc_sample_type': 'Primary Tumor' } @@ -34024,11 +36299,11 @@ C3N-03020.MethArray.Green.T C3N-03020 CCRCC Methylation Array tumor CPT018908001 C3N-03020.MethArray.Red.T C3N-03020 CCRCC Methylation Array tumor CPT0189080011 203220070151_R08C01_Red.idat 13676231 IDAT Red NA CPTAC3 6fa21eb2-57b4-40cb-91ac-67528b54cffe c99af308908491d35aefc2b743d1a603 { 'aliquot_tag': 'ALQ_17ad5ffe', 'gdc_sample_type': 'Primary Tumor' } C3N-03020.miRNA-Seq.T C3N-03020 CCRCC miRNA-Seq tumor CPT0189080009 190130_UNC31-K00269_0188_BH2FGCBBXY_TAATCG_S42_L005_R1_001.unaln.bam 170871592 BAM unaligned CPTAC3 e99dc000-8fd4-434a-a4db-f1542912374f 2766dd79d16ca85c6fb060ea455e95bb { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor' } C3N-03020.miRNA-Seq.T.hg38 C3N-03020 CCRCC miRNA-Seq tumor CPT0189080009 e8acf01d-03f5-48c7-8745-7956334c5b8f_mirnaseq_gdc_realn.bam 190636064 BAM harmonized CPTAC3 123a1c23-3a00-445f-b956-b44ba9e8d5b3 d26d5ae91102251bed133f37e156b3bd { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03020.RNA-Seq.chimeric.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 9b6824b8-ea0c-43de-8421-0384fa2acc70.rna_seq.chimeric.gdc_realn.bam 37216560 BAM chimeric harmonized CPTAC3 14cde87f-138c-4109-990a-cb21101f6c50 0cd1348fa79095e99f4382814ea996db { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03020.RNA-Seq.genomic.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 9b6824b8-ea0c-43de-8421-0384fa2acc70.rna_seq.genomic.gdc_realn.bam 7677365209 BAM genomic harmonized CPTAC3 953d3902-8525-4528-8282-99f792cfb8bc 43f48465a4ff2a0be2c810491d20d957 { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03020.RNA-Seq.R1_L001.T C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGAAA_S2_L001_R1_001.fastq.gz 3608929328 FASTQ R1_L001 unaligned CPTAC3 850eedab-8759-45ec-9839-185f0ccd0f4d 7ea4a9c7949dd9f0c7df5c592aac0dc2 { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03020.RNA-Seq.R2_L001.T C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGAAA_S2_L001_R2_001.fastq.gz 3686692454 FASTQ R2_L001 unaligned CPTAC3 ed56c706-12d3-4109-8738-fe891ed8e99f 5a08a0ab735b4646ca1e68e4af2f98fe { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03020.RNA-Seq.transcriptome.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 9b6824b8-ea0c-43de-8421-0384fa2acc70.rna_seq.transcriptome.gdc_realn.bam 8341865289 BAM transcriptome harmonized CPTAC3 af784871-24c2-4d5b-b913-b39bf7185711 1a128a19e24f7f095558d692195a0681 { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03020.RNA-Seq.chimeric.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 0c20378e-f82d-4afc-80bc-efc7df7348a4.rna_seq.chimeric.gdc_realn.bam 37197408 BAM chimeric harmonized CPTAC3 7c576f96-092c-4e8f-b1ba-29f8c1b6403e cc26fcd997756220388773083a41b675 { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03020.RNA-Seq.genomic.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 0c20378e-f82d-4afc-80bc-efc7df7348a4.rna_seq.genomic.gdc_realn.bam 7678429446 BAM genomic harmonized CPTAC3 61d80ab5-1f61-497f-88ac-41e08a5eb91f 65faaa94cd206733b43cdf811af9b626 { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03020.RNA-Seq.R1_L001.T C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGAAA_S2_L001_R1_001.fastq.gz 3608929328 FASTQ R1_L001 unaligned CPTAC3 850eedab-8759-45ec-9839-185f0ccd0f4d 7ea4a9c7949dd9f0c7df5c592aac0dc2 { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03020.RNA-Seq.R2_L001.T C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGAAA_S2_L001_R2_001.fastq.gz 3686692454 FASTQ R2_L001 unaligned CPTAC3 ed56c706-12d3-4109-8738-fe891ed8e99f 5a08a0ab735b4646ca1e68e4af2f98fe { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03020.RNA-Seq.transcriptome.T.hg38 C3N-03020 CCRCC RNA-Seq tumor CPT0189080009 0c20378e-f82d-4afc-80bc-efc7df7348a4.rna_seq.transcriptome.gdc_realn.bam 9489851615 BAM transcriptome harmonized CPTAC3 e7192cb7-4266-42e2-bec5-50186ab65f00 0f44576fc7fff9a313c8e9a8e01536ab { 'aliquot_tag': 'ALQ_6de68d', 'gdc_sample_type': 'Primary Tumor' } C3N-03020.WGS.N C3N-03020 CCRCC WGS blood_normal CPT0189100002 CPT0189100002.WholeGenome.RP-1303.bam 76296759120 BAM aligned CPTAC3 308c6796-4678-4518-b6d8-fa41ef257c7e ae02bca4dd163decc22933d5bbcd071f { 'aliquot_tag': 'ALQ_6c93a761', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03020.WGS.N.hg38 C3N-03020 CCRCC WGS blood_normal CPT0189100002 bf26c019-5a7f-4c24-a45c-593978962201_wgs_gdc_realn.bam 111352753437 BAM harmonized CPTAC3 45243d21-3eea-4d0b-b64a-740753ea401e 76cc19ae594dc2bed320b68e0966183e { 'aliquot_tag': 'ALQ_6c93a761', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03020.WGS.T C3N-03020 CCRCC WGS tumor CPT0189080011 CPT0189080011.WholeGenome.RP-1303.bam 55359168645 BAM aligned CPTAC3 cd661a21-071f-475b-bb7e-29744e80ce61 a40b49a7a5bf787e52af06cb6d5678df { 'aliquot_tag': 'ALQ_17ad5ffe', 'gdc_sample_type': 'Primary Tumor' } @@ -34045,16 +36320,16 @@ C3N-03021.miRNA-Seq.A C3N-03021 CCRCC miRNA-Seq tissue_normal CPT0189120006 1902 C3N-03021.miRNA-Seq.A.hg38 C3N-03021 CCRCC miRNA-Seq tissue_normal CPT0189120006 ce634d6c-fbec-4a3d-a96b-034b8fd3fc17_mirnaseq_gdc_realn.bam 260719789 BAM harmonized CPTAC3 fd82f28a-14b8-4aec-a0cc-7e2c5104bbec 8e0e56b09d44ad035ec80b2d3a1f3445 { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03021.miRNA-Seq.T C3N-03021 CCRCC miRNA-Seq tumor CPT0189110009 190130_UNC31-K00269_0188_BH2FGCBBXY_TACAGC_S43_L005_R1_001.unaln.bam 163276088 BAM unaligned CPTAC3 f008427e-3472-4dc5-8cb3-7b42cbe5c624 f01575e490725cc3a050638f42dda88c { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor' } C3N-03021.miRNA-Seq.T.hg38 C3N-03021 CCRCC miRNA-Seq tumor CPT0189110009 a6f1e532-baae-42d5-8e2d-19c2db219a73_mirnaseq_gdc_realn.bam 179401149 BAM harmonized CPTAC3 9cd0f0d6-4755-4388-94c4-3447a81a009e b45b4e908b5814e51e41fe1214d95e9c { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor' } -C3N-03021.RNA-Seq.chimeric.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 8c199b90-064a-44b8-8e6e-c9ba4599d06d.rna_seq.chimeric.gdc_realn.bam 107395079 BAM chimeric harmonized CPTAC3 011db6df-e973-4ac5-8fcf-85972fe44265 455ef60216ade4013e128d94bc69a5ad { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03021.RNA-Seq.chimeric.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 3e09c2d8-155c-410b-b7c4-356bf7a2d7b9.rna_seq.chimeric.gdc_realn.bam 40447484 BAM chimeric harmonized CPTAC3 4392d01c-af23-4792-868f-e84442112921 13216ff6c1a7d845abc55439357aabba { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor' } -C3N-03021.RNA-Seq.genomic.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 8c199b90-064a-44b8-8e6e-c9ba4599d06d.rna_seq.genomic.gdc_realn.bam 9731269046 BAM genomic harmonized CPTAC3 75422f1c-a6bc-4272-bdcf-f16566a7db18 a880c0c46bb0c0dfdf9f6ef473d51c76 { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03021.RNA-Seq.genomic.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 3e09c2d8-155c-410b-b7c4-356bf7a2d7b9.rna_seq.genomic.gdc_realn.bam 8770217625 BAM genomic harmonized CPTAC3 f585973e-b851-4d51-beea-4fa3443d773c 8569227801c16cdd62e531e970fab290 { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor' } -C3N-03021.RNA-Seq.R1_L001.T C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4423006156 FASTQ R1_L001 unaligned CPTAC3 8fd114d3-7cba-4e69-a64e-21f71e0e3be6 f8442af33ee1a24195147eb2f9564c9a { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor' } -C3N-03021.RNA-Seq.R1_L004.A C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTTGA_S16_L004_R1_001.fastq.gz 4544145184 FASTQ R1_L004 unaligned CPTAC3 419649c5-5daf-48a5-b179-71bee81c3e37 7adcf76d629c56e41afce94a7751dc4a { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03021.RNA-Seq.R2_L001.T C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4770379674 FASTQ R2_L001 unaligned CPTAC3 27aa231e-944d-41fb-9d71-18a2d029842a 2b849af786be3f8b707bbc8e2a310922 { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor' } -C3N-03021.RNA-Seq.R2_L004.A C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTTGA_S16_L004_R2_001.fastq.gz 4999382702 FASTQ R2_L004 unaligned CPTAC3 f5f94a34-6065-4e26-b24c-4786bdabc87d 97315e9ff110b5c355280734b9f230c5 { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03021.RNA-Seq.transcriptome.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 8c199b90-064a-44b8-8e6e-c9ba4599d06d.rna_seq.transcriptome.gdc_realn.bam 9483576538 BAM transcriptome harmonized CPTAC3 7208fee7-9ac8-4acd-b968-17948e82c09c b4a18289e5de8f50a6cab12b555a34f0 { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03021.RNA-Seq.transcriptome.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 3e09c2d8-155c-410b-b7c4-356bf7a2d7b9.rna_seq.transcriptome.gdc_realn.bam 11062961010 BAM transcriptome harmonized CPTAC3 ad3614d2-051d-4302-ad83-6591b1b70f2e bc1eba97c02c015631cf65d344371d09 { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor' } +C3N-03021.RNA-Seq.chimeric.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 4f56a807-0b91-419d-9ef6-9ca236402f61.rna_seq.chimeric.gdc_realn.bam 107375767 BAM chimeric harmonized CPTAC3 aecd657d-89a3-4689-a668-879305658b25 ee128e65695149984e0a0b707d2c9eaf { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03021.RNA-Seq.chimeric.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 a74a503c-5236-4530-b6d2-2832db89a9ff.rna_seq.chimeric.gdc_realn.bam 40447748 BAM chimeric harmonized CPTAC3 2ff06647-dc27-4a28-8dab-56aa5f77ca0b de20ab49c982a0f80162b36eee1b52b8 { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor' } +C3N-03021.RNA-Seq.genomic.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 4f56a807-0b91-419d-9ef6-9ca236402f61.rna_seq.genomic.gdc_realn.bam 9732399630 BAM genomic harmonized CPTAC3 1c09849d-ac18-4082-8d27-cf92e2d3df86 37ad5bdaa655c9c67ff6f9d4f55ffdf4 { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03021.RNA-Seq.genomic.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 a74a503c-5236-4530-b6d2-2832db89a9ff.rna_seq.genomic.gdc_realn.bam 8771857657 BAM genomic harmonized CPTAC3 d567af39-3ecb-485d-9f22-9677bfe617f5 dbb923b64479f0959a0cdb82b1fa5b24 { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor' } +C3N-03021.RNA-Seq.R1_L001.T C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R1_001.fastq.gz 4423006156 FASTQ R1_L001 unaligned CPTAC3 8fd114d3-7cba-4e69-a64e-21f71e0e3be6 f8442af33ee1a24195147eb2f9564c9a { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03021.RNA-Seq.R1_L004.A C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTTGA_S16_L004_R1_001.fastq.gz 4544145184 FASTQ R1_L004 unaligned CPTAC3 419649c5-5daf-48a5-b179-71bee81c3e37 7adcf76d629c56e41afce94a7751dc4a { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03021.RNA-Seq.R2_L001.T C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 190125_UNC31-K00269_0184_AH3M32BBXY_GTGGCC_S1_L001_R2_001.fastq.gz 4770379674 FASTQ R2_L001 unaligned CPTAC3 27aa231e-944d-41fb-9d71-18a2d029842a 2b849af786be3f8b707bbc8e2a310922 { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03021.RNA-Seq.R2_L004.A C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTTGA_S16_L004_R2_001.fastq.gz 4999382702 FASTQ R2_L004 unaligned CPTAC3 f5f94a34-6065-4e26-b24c-4786bdabc87d 97315e9ff110b5c355280734b9f230c5 { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-03021.RNA-Seq.transcriptome.A.hg38 C3N-03021 CCRCC RNA-Seq tissue_normal CPT0189120006 4f56a807-0b91-419d-9ef6-9ca236402f61.rna_seq.transcriptome.gdc_realn.bam 10878897700 BAM transcriptome harmonized CPTAC3 6b964d8a-01eb-49de-aba4-1860f27c6940 c1e5bbf2de16fa6fdeaf8b28709d6a2a { 'aliquot_tag': 'ALQ_113e3018', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03021.RNA-Seq.transcriptome.T.hg38 C3N-03021 CCRCC RNA-Seq tumor CPT0189110009 a74a503c-5236-4530-b6d2-2832db89a9ff.rna_seq.transcriptome.gdc_realn.bam 12642806829 BAM transcriptome harmonized CPTAC3 5fee6850-8035-4a08-a1ae-b7eb85e26a4f 3d0a39cec65aacd5878bbbbbd28b1a92 { 'aliquot_tag': 'ALQ_c6215759', 'gdc_sample_type': 'Primary Tumor' } C3N-03021.WGS.N C3N-03021 CCRCC WGS blood_normal CPT0189150002 CPT0189150002.WholeGenome.RP-1303.bam 133904478666 BAM aligned CPTAC3 1f2b920c-6f2f-4850-a039-0e044d2826a5 e5473de744eb55a1a6146d16d0d26ee6 { 'aliquot_tag': 'ALQ_a4732811', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03021.WGS.N.hg38 C3N-03021 CCRCC WGS blood_normal CPT0189150002 3cd7cad6-a799-402a-864c-fd700781a8d4_wgs_gdc_realn.bam 194355992259 BAM harmonized CPTAC3 27a12993-a3db-4b26-b58a-fddafe23c594 94ce42db82592e21c94017a753415408 { 'aliquot_tag': 'ALQ_a4732811', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03021.WGS.T C3N-03021 CCRCC WGS tumor CPT0189110006 CPT0189110006.WholeGenome.RP-1303.bam 68293717111 BAM aligned CPTAC3 f662d034-475b-4223-9fac-dbf2d4627514 991c91e2d5154df2d0e0589b92f7fb86 { 'aliquot_tag': 'ALQ_569e4ac8', 'gdc_sample_type': 'Primary Tumor' } @@ -34069,11 +36344,11 @@ C3N-03025.MethArray.Green.T C3N-03025 GBM Methylation Array tumor CPT0225840006 C3N-03025.MethArray.Red.T C3N-03025 GBM Methylation Array tumor CPT0225840006 204367490151_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 a4753ba6-da60-4003-add0-76333a79aefd 5a56bb76142cd244c94ce69d31f579eb { 'aliquot_tag': 'ALQ_d69cde09', 'gdc_sample_type': 'Primary Tumor' } C3N-03025.miRNA-Seq.T C3N-03025 GBM miRNA-Seq tumor CPT0225840009 200403_UNC31-K00269_0274_AHCF7GBBXY_GTTTCG_S45_L002_R1_001.unaln.bam 252024670 BAM unaligned CPTAC3 6528718f-4883-44ce-9c34-afa8cd8e42fc 46e396b4211575b784e9786e78295254 { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor' } C3N-03025.miRNA-Seq.T.hg38 C3N-03025 GBM miRNA-Seq tumor CPT0225840009 ea60a154-98b8-4db7-8be8-17e4b8be7d27_mirnaseq_gdc_realn.bam 281649400 BAM harmonized CPTAC3 8595b7ac-8a46-4859-bd04-100da74c51b1 544467b2a4a26d386e2b4159e2932505 { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor' } -C3N-03025.RNA-Seq.chimeric.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 1905799f-934c-49d6-9e41-ba58c4d616f3.rna_seq.chimeric.gdc_realn.bam 26810279 BAM chimeric harmonized CPTAC3 6fcdcc47-24ea-450f-aab3-fbc87c7f19a0 a04f717fd81121d0b4985166aa7fac27 { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor' } -C3N-03025.RNA-Seq.genomic.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 1905799f-934c-49d6-9e41-ba58c4d616f3.rna_seq.genomic.gdc_realn.bam 7021169075 BAM genomic harmonized CPTAC3 0d54b142-2529-414b-aab0-ad024c94ea62 2b17daa9e33e2ccad397b2be8110e51f { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor' } -C3N-03025.RNA-Seq.R1_L004.T C3N-03025 GBM RNA-Seq tumor CPT0225840009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R1_001.fastq.gz 3206199920 FASTQ R1_L004 unaligned CPTAC3 6a12152f-6b09-4e4b-87a2-deac64ea83a1 7af7d029b5f85c979d54acde55db043c { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor' } -C3N-03025.RNA-Seq.R2_L004.T C3N-03025 GBM RNA-Seq tumor CPT0225840009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R2_001.fastq.gz 3689785219 FASTQ R2_L004 unaligned CPTAC3 7ff9e556-fa20-4d91-8dc9-b02275783e96 53f472cb8808a3126bd6f5ce40f7ce57 { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor' } -C3N-03025.RNA-Seq.transcriptome.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 1905799f-934c-49d6-9e41-ba58c4d616f3.rna_seq.transcriptome.gdc_realn.bam 6534951961 BAM transcriptome harmonized CPTAC3 e247ac02-c3d8-4564-b707-403138bf192b 2587c4c98670d59c14a4727505ce0b70 { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor' } +C3N-03025.RNA-Seq.chimeric.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 a2584bf9-babf-4c86-aa11-bb2abb773223.rna_seq.chimeric.gdc_realn.bam 26792283 BAM chimeric harmonized CPTAC3 c618ec8f-070a-4598-8390-f8257d9cf1b4 c775162e08255582a6e9611242201b1b { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor' } +C3N-03025.RNA-Seq.genomic.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 a2584bf9-babf-4c86-aa11-bb2abb773223.rna_seq.genomic.gdc_realn.bam 7021881399 BAM genomic harmonized CPTAC3 f2ea2f6a-ecb8-4e79-94d6-ccb96ae3efdf e280962fd7b31936583fe7cbdba0fd7c { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor' } +C3N-03025.RNA-Seq.R1_L004.T C3N-03025 GBM RNA-Seq tumor CPT0225840009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R1_001.fastq.gz 3206199920 FASTQ R1_L004 unaligned CPTAC3 6a12152f-6b09-4e4b-87a2-deac64ea83a1 7af7d029b5f85c979d54acde55db043c { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03025.RNA-Seq.R2_L004.T C3N-03025 GBM RNA-Seq tumor CPT0225840009 200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R2_001.fastq.gz 3689785219 FASTQ R2_L004 unaligned CPTAC3 7ff9e556-fa20-4d91-8dc9-b02275783e96 53f472cb8808a3126bd6f5ce40f7ce57 { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03025.RNA-Seq.transcriptome.T.hg38 C3N-03025 GBM RNA-Seq tumor CPT0225840009 a2584bf9-babf-4c86-aa11-bb2abb773223.rna_seq.transcriptome.gdc_realn.bam 7483372515 BAM transcriptome harmonized CPTAC3 f392c768-c6de-45ca-8c92-763802c4724a 1710fc539e4046c251a400f042f9fd9a { 'aliquot_tag': 'ALQ_4623c398', 'gdc_sample_type': 'Primary Tumor' } C3N-03025.WGS.N C3N-03025 GBM WGS blood_normal CPT0225860002 CPT0225860002.WholeGenome.RP-2158.bam 25773776013 BAM aligned CPTAC3 59fa4708-fd8f-4566-9d94-f62826f236be a00f5117d3b637515b9b0aa4c2924b89 { 'aliquot_tag': 'ALQ_ab314970', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03025.WGS.N.hg38 C3N-03025 GBM WGS blood_normal CPT0225860002 e7c50500-cae7-47da-be3b-86c64714d880_wgs_gdc_realn.bam 76319967086 BAM harmonized CPTAC3 17dc03a1-1c8b-464e-b09e-4c6824d6ae7d d80f2fcbb813fb1394e0f80d6e7ead9a { 'aliquot_tag': 'ALQ_ab314970', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03025.WGS.T C3N-03025 GBM WGS tumor CPT0225840006 CPT0225840006.WholeGenome.RP-2158.bam 27751823683 BAM aligned CPTAC3 fee1ecb4-d543-4fe1-acca-0bd9270d3a36 2c64fa5e3439eee3a7342734a675b557 { 'aliquot_tag': 'ALQ_d69cde09', 'gdc_sample_type': 'Primary Tumor' } @@ -34085,10 +36360,16 @@ C3N-03025.WXS.T.hg38 C3N-03025 GBM WXS tumor CPT0225840006 db572b5f-fd90-4c8b-86 C3N-03026.MethArray.Green.A C3N-03026 GBM Methylation Array tissue_normal CPT0404650013 205555390119_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 4849d1ac-a065-4486-bdd3-eb2cf61006d8 10c2da8ecbf8f197328ec7aa489a5f78 { 'aliquot_tag': 'ALQ_2fcf2644', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03026.MethArray.Red.A C3N-03026 GBM Methylation Array tissue_normal CPT0404650013 205555390119_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 b422de53-d1ac-4a06-a500-7ba88df3e850 90b431cca9fad09ac303cc353013ac94 { 'aliquot_tag': 'ALQ_2fcf2644', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03026.miRNA-Seq.A C3N-03026 GBM miRNA-Seq tissue_normal CPT0404650017 210702_UNC32-K00270_0289_AHKJ22BBXY_TACAGC_S35_L005_R1_001.unaln.bam 220513139 BAM unaligned CPTAC3 0e6c36db-afd8-4696-9f50-a36274ce757b e29d3fcafa8212de093e7a2326054df8 { 'aliquot_tag': 'ALQ_28a2e25d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03026.RNA-Seq.R1_L004.A C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R1_001.fastq.gz 4582848534 FASTQ R1_L004 unaligned CPTAC3 6cf7ffc2-885e-4bc9-94fb-7d88e689ec88 b8a62a5dc8e5969533713554b3a0959d { 'aliquot_tag': 'ALQ_28a2e25d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03026.RNA-Seq.R2_L004.A C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R2_001.fastq.gz 4747391657 FASTQ R2_L004 unaligned CPTAC3 f826f72f-036c-4802-869d-9f33a5289ab1 1cc240055156257381563c8f511362aa { 'aliquot_tag': 'ALQ_28a2e25d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03026.miRNA-Seq.A.hg38 C3N-03026 GBM miRNA-Seq tissue_normal CPT0404650017 7ceab83d-57f4-46d6-8116-a6c8a2933401_mirnaseq_gdc_realn.bam 239978338 BAM harmonized CPTAC3 cc6695f9-a8e0-4137-bedf-d4a544e6ed53 1e4a7be2999604683407858385017eb5 { 'aliquot_tag': 'ALQ_28a2e25d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03026.RNA-Seq.chimeric.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.chimeric.gdc_realn.bam 365619377 BAM chimeric harmonized CPTAC3 be858ea5-891c-420b-8390-1561f0a51953 87ec29fa0df5f3b24204a30c0eef04f3 { 'aliquot_tag': 'ALQ_28a2e25d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03026.RNA-Seq.genomic.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.genomic.gdc_realn.bam 9699464204 BAM genomic harmonized CPTAC3 c6ecf701-e71d-422a-ad03-e1c1b6795206 fafc49a5dc8ee7ac80f53f599a538c8c { 'aliquot_tag': 'ALQ_28a2e25d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03026.RNA-Seq.R1_L004.A C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R1_001.fastq.gz 4582848534 FASTQ R1_L004 unaligned CPTAC3 6cf7ffc2-885e-4bc9-94fb-7d88e689ec88 b8a62a5dc8e5969533713554b3a0959d { 'aliquot_tag': 'ALQ_28a2e25d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03026.RNA-Seq.R2_L004.A C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 210708_UNC32-K00270_0290_BHLLHHBBXY_AACTGTAG-ACGCCGCA_S13_L004_R2_001.fastq.gz 4747391657 FASTQ R2_L004 unaligned CPTAC3 f826f72f-036c-4802-869d-9f33a5289ab1 1cc240055156257381563c8f511362aa { 'aliquot_tag': 'ALQ_28a2e25d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-03026.RNA-Seq.transcriptome.A.hg38 C3N-03026 GBM RNA-Seq tissue_normal CPT0404650017 104de72f-7f50-416f-9133-78419d64bfd2.rna_seq.transcriptome.gdc_realn.bam 11692960445 BAM transcriptome harmonized CPTAC3 dc1a1002-7cf7-4c09-bbc7-6ea16aa50134 7a4ae39ae9debfe289fffe940a299ea5 { 'aliquot_tag': 'ALQ_28a2e25d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03026.WXS.A C3N-03026 GBM WXS tissue_normal CPT0404650013 CPT0404650013.WholeExome.RP-1303.bam 30030352752 BAM aligned CPTAC3 ce8bd00b-7413-437c-b0cc-06a5aced75dc 97bceeb9941b87bad6bd20879c12fda7 { 'aliquot_tag': 'ALQ_2fcf2644', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03026.WXS.A.hg38 C3N-03026 GBM WXS tissue_normal CPT0404650013 af48f613-b720-40f7-b1b7-24b7b0be0a06_wxs_gdc_realn.bam 41574964277 BAM harmonized CPTAC3 7d2e1f0f-fce0-44d3-b58d-acbeeebb462a 725e43442caedd1daa3c101139cdbe91 { 'aliquot_tag': 'ALQ_2fcf2644', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03026.WXS.N C3N-03026 GBM WXS blood_normal CPT0404820002 CPT0404820002.WholeExome.RP-1303.bam 28972194720 BAM aligned CPTAC3 8bbc8a8e-daa0-4414-afad-656d4b7c1b8a df90041c089251a1044abab53b85f6db { 'aliquot_tag': 'ALQ_c9f99af3', 'gdc_sample_type': 'Blood Derived Normal' } +C3N-03026.WXS.N.hg38 C3N-03026 GBM WXS blood_normal CPT0404820002 5eb34dcc-45f8-4e79-a928-68f21c1e1da2_wxs_gdc_realn.bam 40280714342 BAM harmonized CPTAC3 21123e7d-d623-4cbe-b9dc-78011ba2735a a7ed172c69a873a050a41163b004a527 { 'aliquot_tag': 'ALQ_c9f99af3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03027.MethArray.Green.A C3N-03027 HNSCC Methylation Array tissue_normal CPT0226400006 203273200073_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f565bc41-7c7f-4bd6-8fe8-a35f960803f0 4e0709ed2adc352c4d8fde4aed75ac2b { 'aliquot_tag': 'ALQ_6536a22f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03027.MethArray.Green.T C3N-03027 HNSCC Methylation Array tumor CPT0226390006 203281980258_R05C01_Grn.idat 13676206 IDAT Green NA CPTAC3 b00ab547-4b45-4d7c-8d76-07cbc0ce7153 57946de3e9b9741a641c907d27836a78 { 'aliquot_tag': 'ALQ_7523f0e6', 'gdc_sample_type': 'Primary Tumor' } C3N-03027.MethArray.Red.A C3N-03027 HNSCC Methylation Array tissue_normal CPT0226400006 203273200073_R05C01_Red.idat 13676206 IDAT Red NA CPTAC3 15d1b5e2-aef4-4eef-96f5-f539ae92840a 2eecff86ecf1b02fddb881d2e485f270 { 'aliquot_tag': 'ALQ_6536a22f', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -34099,12 +36380,12 @@ C3N-03027.miRNA-Seq.T C3N-03027 HNSCC miRNA-Seq tumor CPT0226390009 190228_UNC32 C3N-03027.miRNA-Seq.T.hg38 C3N-03027 HNSCC miRNA-Seq tumor CPT0226390009 ea14ce9d-2520-4983-bd7a-db0dad253856_mirnaseq_gdc_realn.bam 235076198 BAM harmonized CPTAC3 5b8314db-4696-4b5f-9e36-be7fcea538c6 b1cc3f92c0dc5f92ac5c9ce65168a95b { 'aliquot_tag': 'ALQ_e59ced77', 'gdc_sample_type': 'Primary Tumor' } C3N-03027.RNA-Seq.chimeric.A.hg38 C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 f46b37ac-9e11-4e8b-b65d-a9b0eb9c7691.rna_seq.chimeric.gdc_realn.bam 90096204 BAM chimeric harmonized CPTAC3 515cc5fa-82c7-40a9-8a43-585ec50df5cc 8c80150b9dd07f0be45d650cba7311fb { 'aliquot_tag': 'ALQ_f589bfbe', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03027.RNA-Seq.chimeric.T.hg38 C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 126e3927-cb78-4708-a9c0-12b9c8471a87.rna_seq.chimeric.gdc_realn.bam 113942877 BAM chimeric harmonized CPTAC3 2c60ad8a-9733-42a7-aaef-d9e3e2ff7906 1cbc3e175db6e189020882dfcfc47867 { 'aliquot_tag': 'ALQ_e59ced77', 'gdc_sample_type': 'Primary Tumor' } -C3N-03027.RNA-Seq.genomic.A.hg38 C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 f46b37ac-9e11-4e8b-b65d-a9b0eb9c7691.rna_seq.genomic.gdc_realn.bam 8448028061 BAM genomic harmonized CPTAC3 f416fe6a-8ae2-4b6f-abf5-ff2690264603 24f944afeeba0793a064c253691739cf { 'aliquot_tag': 'ALQ_f589bfbe', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03027.RNA-Seq.genomic.A.hg38 C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 f46b37ac-9e11-4e8b-b65d-a9b0eb9c7691.rna_seq.genomic.gdc_realn.bam 8448028061 BAM genomic harmonized CPTAC3 74e94848-3611-4bab-a962-b82926d353a0 24f944afeeba0793a064c253691739cf { 'aliquot_tag': 'ALQ_f589bfbe', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03027.RNA-Seq.genomic.T.hg38 C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 126e3927-cb78-4708-a9c0-12b9c8471a87.rna_seq.genomic.gdc_realn.bam 7371910238 BAM genomic harmonized CPTAC3 0d16d629-f4da-4820-8b9d-07853a388516 3d5847bc4b25d8ae6a8e8f395d07420a { 'aliquot_tag': 'ALQ_e59ced77', 'gdc_sample_type': 'Primary Tumor' } -C3N-03027.RNA-Seq.R1_L004.A C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 190411_UNC31-K00269_0208_BH3W3KBBXY_TGGATCGA-GTGCGATA_S19_L004_R1_001.fastq.gz 3993517750 FASTQ R1_L004 unaligned CPTAC3 212c3ae2-25f3-42ff-9df4-567f823a9622 d89c0ac952966a02b3bec271db070193 { 'aliquot_tag': 'ALQ_f589bfbe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03027.RNA-Seq.R1_L007.T C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 190320_UNC31-K00269_0200_BH5CF5BBXY_ATTCCT_S25_L007_R1_001.fastq.gz 3445859327 FASTQ R1_L007 unaligned CPTAC3 d729d0ae-e78c-464b-956e-8447d557d8ad caa99ced6c250314034cabed25e80b9e { 'aliquot_tag': 'ALQ_e59ced77', 'gdc_sample_type': 'Primary Tumor' } -C3N-03027.RNA-Seq.R2_L004.A C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 190411_UNC31-K00269_0208_BH3W3KBBXY_TGGATCGA-GTGCGATA_S19_L004_R2_001.fastq.gz 4507638946 FASTQ R2_L004 unaligned CPTAC3 c5bff23b-a4d8-40b5-8db1-c15a8d8ea583 aa8d061c2033bdaf6c1dc84d356225c7 { 'aliquot_tag': 'ALQ_f589bfbe', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03027.RNA-Seq.R2_L007.T C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 190320_UNC31-K00269_0200_BH5CF5BBXY_ATTCCT_S25_L007_R2_001.fastq.gz 3942588207 FASTQ R2_L007 unaligned CPTAC3 a31eb8da-0b6c-4a97-872c-9ee4869bb9b0 d1df7c7bd2a911f7aa3f2cd17a12bc59 { 'aliquot_tag': 'ALQ_e59ced77', 'gdc_sample_type': 'Primary Tumor' } +C3N-03027.RNA-Seq.R1_L004.A C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 190411_UNC31-K00269_0208_BH3W3KBBXY_TGGATCGA-GTGCGATA_S19_L004_R1_001.fastq.gz 3993517750 FASTQ R1_L004 unaligned CPTAC3 212c3ae2-25f3-42ff-9df4-567f823a9622 d89c0ac952966a02b3bec271db070193 { 'aliquot_tag': 'ALQ_f589bfbe', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03027.RNA-Seq.R1_L007.T C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 190320_UNC31-K00269_0200_BH5CF5BBXY_ATTCCT_S25_L007_R1_001.fastq.gz 3445859327 FASTQ R1_L007 unaligned CPTAC3 d729d0ae-e78c-464b-956e-8447d557d8ad caa99ced6c250314034cabed25e80b9e { 'aliquot_tag': 'ALQ_e59ced77', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03027.RNA-Seq.R2_L004.A C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 190411_UNC31-K00269_0208_BH3W3KBBXY_TGGATCGA-GTGCGATA_S19_L004_R2_001.fastq.gz 4507638946 FASTQ R2_L004 unaligned CPTAC3 c5bff23b-a4d8-40b5-8db1-c15a8d8ea583 aa8d061c2033bdaf6c1dc84d356225c7 { 'aliquot_tag': 'ALQ_f589bfbe', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-03027.RNA-Seq.R2_L007.T C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 190320_UNC31-K00269_0200_BH5CF5BBXY_ATTCCT_S25_L007_R2_001.fastq.gz 3942588207 FASTQ R2_L007 unaligned CPTAC3 a31eb8da-0b6c-4a97-872c-9ee4869bb9b0 d1df7c7bd2a911f7aa3f2cd17a12bc59 { 'aliquot_tag': 'ALQ_e59ced77', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-03027.RNA-Seq.transcriptome.A.hg38 C3N-03027 HNSCC RNA-Seq tissue_normal CPT0226400009 f46b37ac-9e11-4e8b-b65d-a9b0eb9c7691.rna_seq.transcriptome.gdc_realn.bam 11859864076 BAM transcriptome harmonized CPTAC3 a9e62e01-10c6-4e4e-980f-a2c1b7d39820 297663a8574b81d119ac073312c82ad7 { 'aliquot_tag': 'ALQ_f589bfbe', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03027.RNA-Seq.transcriptome.T.hg38 C3N-03027 HNSCC RNA-Seq tumor CPT0226390009 126e3927-cb78-4708-a9c0-12b9c8471a87.rna_seq.transcriptome.gdc_realn.bam 9750475450 BAM transcriptome harmonized CPTAC3 41b8fb07-bfe5-40b4-a67e-6364f8722e92 b9629589318fee8f20a753c1e1d836af { 'aliquot_tag': 'ALQ_e59ced77', 'gdc_sample_type': 'Primary Tumor' } C3N-03027.WGS.N C3N-03027 HNSCC WGS blood_normal CPT0226430002 CPT0226430002.WholeGenome.RP-1303.bam 70198489101 BAM aligned CPTAC3 edced534-7501-4c4b-8b2b-d7f2be9930dc e5637e134c4b551eb698819d9d3fb9b1 { 'aliquot_tag': 'ALQ_25fb1ce6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34127,16 +36408,19 @@ C3N-03028.miRNA-Seq.T C3N-03028 HNSCC miRNA-Seq tumor CPT0226440009 190228_UNC32 C3N-03028.miRNA-Seq.T.hg38 C3N-03028 HNSCC miRNA-Seq tumor CPT0226440009 595a33f3-ab3a-417f-ae4e-ea24e760675c_mirnaseq_gdc_realn.bam 230172761 BAM harmonized CPTAC3 3cc7bc7d-eaa0-42b6-9295-9fd8d1e0726f 0c722df060650cd0b8454f57da70f990 { 'aliquot_tag': 'ALQ_9197e', 'gdc_sample_type': 'Primary Tumor' } C3N-03028.RNA-Seq.chimeric.A.hg38 C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 3f33f7e6-e5ae-429c-bc3f-e6221d9c7e45.rna_seq.chimeric.gdc_realn.bam 40894797 BAM chimeric harmonized CPTAC3 f16022d2-949c-4749-805e-bfead91a4977 00bc5575bbc53fad8ff4bf35df207425 { 'aliquot_tag': 'ALQ_3d6930ce', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03028.RNA-Seq.chimeric.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 9ee95f3c-9ef2-4e61-b023-699e0bc3898a.rna_seq.chimeric.gdc_realn.bam 223304477 BAM chimeric harmonized CPTAC3 11b5cf2e-afce-41f9-bb11-38c7628ad344 5d5bae6466709ecb800ef7afa7f253fe { 'aliquot_tag': 'ALQ_9197e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03028.RNA-Seq.genomic.A.hg38 C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 3f33f7e6-e5ae-429c-bc3f-e6221d9c7e45.rna_seq.genomic.gdc_realn.bam 8875415733 BAM genomic harmonized CPTAC3 765e3048-1044-401f-85ef-c4f3a6d8381a 7dadada6db52dc56688f6387d23cdbaf { 'aliquot_tag': 'ALQ_3d6930ce', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03028.RNA-Seq.genomic.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 9ee95f3c-9ef2-4e61-b023-699e0bc3898a.rna_seq.genomic.gdc_realn.bam 7599782885 BAM genomic harmonized CPTAC3 d88bb4ed-b6d1-43e5-a7b4-60838a06d7a7 a5bcb3b31297a9069bb79543e228164b { 'aliquot_tag': 'ALQ_9197e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03028.RNA-Seq.R1_L001.T C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCC_S3_L001_R1_001.fastq.gz 3688150302 FASTQ R1_L001 unaligned CPTAC3 c55ba245-c1c7-474d-af54-0b0f24340d69 7c0e18a568b05dce0da8bfd974dbb8aa { 'aliquot_tag': 'ALQ_9197e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03028.RNA-Seq.R1_L005.A C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCAGG-CCAACAGA_S23_L005_R1_001.fastq.gz 4292062124 FASTQ R1_L005 unaligned CPTAC3 e589e204-487c-4ad1-9ed0-15ad3d8f565a 00b7f1e9be12803541f136636aba7ff5 { 'aliquot_tag': 'ALQ_3d6930ce', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03028.RNA-Seq.R1_.T C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 20210729_P3_C3_WB7988-Plate3_S27_R1_001.fastq.gz 5413787808 FASTQ R1_ unaligned CPTAC3 3a435eb7-6706-41a1-a5f2-8c6080856d46 017d0182226c6607514f23e397254b9c { 'aliquot_tag': 'ALQ_57503f48', 'gdc_sample_type': 'Primary Tumor' } -C3N-03028.RNA-Seq.R2_L001.T C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCC_S3_L001_R2_001.fastq.gz 4025746235 FASTQ R2_L001 unaligned CPTAC3 42c126a1-fa33-4da7-8ad0-accd65e9eb71 9c02b2d35cb6ac6564127304b9ca2892 { 'aliquot_tag': 'ALQ_9197e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03028.RNA-Seq.R2_L005.A C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCAGG-CCAACAGA_S23_L005_R2_001.fastq.gz 4839193487 FASTQ R2_L005 unaligned CPTAC3 de9b8504-9cad-405e-bffa-edf0edc2e46b fa0a217f34da6de67720920c305b36a5 { 'aliquot_tag': 'ALQ_3d6930ce', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03028.RNA-Seq.R2_.T C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 20210729_P3_C3_WB7988-Plate3_S27_R2_001.fastq.gz 5603673239 FASTQ R2_ unaligned CPTAC3 5957e87c-5970-4b09-b925-00dfeee77970 0c8dd66ee046b421292756c87cf7f607 { 'aliquot_tag': 'ALQ_57503f48', 'gdc_sample_type': 'Primary Tumor' } +C3N-03028.RNA-Seq.chimeric.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 00ed44f5-e994-4897-ac69-c085941b3ae7.rna_seq.chimeric.gdc_realn.bam 116452530 BAM chimeric harmonized CPTAC3 d12777f5-c478-4513-8936-5096b1b84169 493f9997d73cdce10267f57f58142ec1 { 'aliquot_tag': 'ALQ_57503f48', 'gdc_sample_type': 'Primary Tumor' } +C3N-03028.RNA-Seq.genomic.A.hg38 C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 3f33f7e6-e5ae-429c-bc3f-e6221d9c7e45.rna_seq.genomic.gdc_realn.bam 8875415733 BAM genomic harmonized CPTAC3 5e7be264-d857-400c-8258-90ecfc353f69 7dadada6db52dc56688f6387d23cdbaf { 'aliquot_tag': 'ALQ_3d6930ce', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03028.RNA-Seq.genomic.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 9ee95f3c-9ef2-4e61-b023-699e0bc3898a.rna_seq.genomic.gdc_realn.bam 7599782885 BAM genomic harmonized CPTAC3 acf9261b-dd9c-4cf4-8e92-08776663cb6f a5bcb3b31297a9069bb79543e228164b { 'aliquot_tag': 'ALQ_9197e', 'gdc_sample_type': 'Primary Tumor' } +C3N-03028.RNA-Seq.genomic.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 00ed44f5-e994-4897-ac69-c085941b3ae7.rna_seq.genomic.gdc_realn.bam 8426767444 BAM genomic harmonized CPTAC3 b2de53fc-186d-4cf3-87ab-617d9d14baaa c82da4847b5aab56019bb07f67bfe8f3 { 'aliquot_tag': 'ALQ_57503f48', 'gdc_sample_type': 'Primary Tumor' } +C3N-03028.RNA-Seq.R1_L001.T C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCC_S3_L001_R1_001.fastq.gz 3688150302 FASTQ R1_L001 unaligned CPTAC3 c55ba245-c1c7-474d-af54-0b0f24340d69 7c0e18a568b05dce0da8bfd974dbb8aa { 'aliquot_tag': 'ALQ_9197e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03028.RNA-Seq.R1_L005.A C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCAGG-CCAACAGA_S23_L005_R1_001.fastq.gz 4292062124 FASTQ R1_L005 unaligned CPTAC3 e589e204-487c-4ad1-9ed0-15ad3d8f565a 00b7f1e9be12803541f136636aba7ff5 { 'aliquot_tag': 'ALQ_3d6930ce', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03028.RNA-Seq.R2_L001.T C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCC_S3_L001_R2_001.fastq.gz 4025746235 FASTQ R2_L001 unaligned CPTAC3 42c126a1-fa33-4da7-8ad0-accd65e9eb71 9c02b2d35cb6ac6564127304b9ca2892 { 'aliquot_tag': 'ALQ_9197e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03028.RNA-Seq.R2_L005.A C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 190411_UNC31-K00269_0208_BH3W3KBBXY_AGTTCAGG-CCAACAGA_S23_L005_R2_001.fastq.gz 4839193487 FASTQ R2_L005 unaligned CPTAC3 de9b8504-9cad-405e-bffa-edf0edc2e46b fa0a217f34da6de67720920c305b36a5 { 'aliquot_tag': 'ALQ_3d6930ce', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03028.RNA-Seq.T C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 20210729_P3_C3_WB7988-Plate3_S27_R1_001.fastq.gz 5413787808 FASTQ unaligned CPTAC3 3a435eb7-6706-41a1-a5f2-8c6080856d46 017d0182226c6607514f23e397254b9c +C3N-03028.RNA-Seq.T C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 20210729_P3_C3_WB7988-Plate3_S27_R2_001.fastq.gz 5603673239 FASTQ unaligned CPTAC3 5957e87c-5970-4b09-b925-00dfeee77970 0c8dd66ee046b421292756c87cf7f607 C3N-03028.RNA-Seq.transcriptome.A.hg38 C3N-03028 HNSCC RNA-Seq tissue_normal CPT0226450009 3f33f7e6-e5ae-429c-bc3f-e6221d9c7e45.rna_seq.transcriptome.gdc_realn.bam 12544591955 BAM transcriptome harmonized CPTAC3 2e1c659e-e6d4-48ca-bdec-0376449d1831 45803ae88ea92681ebaabb49450ff6bc { 'aliquot_tag': 'ALQ_3d6930ce', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03028.RNA-Seq.transcriptome.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0226440009 9ee95f3c-9ef2-4e61-b023-699e0bc3898a.rna_seq.transcriptome.gdc_realn.bam 10887984366 BAM transcriptome harmonized CPTAC3 da18e694-f46b-475d-a77f-9542d8bfe89e 8de32fdf0ccf2968e002266bd8b61129 { 'aliquot_tag': 'ALQ_9197e', 'gdc_sample_type': 'Primary Tumor' } +C3N-03028.RNA-Seq.transcriptome.T.hg38 C3N-03028 HNSCC RNA-Seq tumor CPT0315300011 00ed44f5-e994-4897-ac69-c085941b3ae7.rna_seq.transcriptome.gdc_realn.bam 7560550611 BAM transcriptome harmonized CPTAC3 1ad3468b-7b10-4616-8ad2-efee47cdcebb a110b79727bd3eee44efcedbe733e272 { 'aliquot_tag': 'ALQ_57503f48', 'gdc_sample_type': 'Primary Tumor' } C3N-03028.WGS.N C3N-03028 HNSCC WGS blood_normal CPT0226480002 CPT0226480002.WholeGenome.RP-1303.bam 64210983743 BAM aligned CPTAC3 d286d0a8-9527-4d7e-a94a-b3923251c602 64da8cd756d9cbcca9396c5f56ac69f5 { 'aliquot_tag': 'ALQ_522b2df7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03028.WGS.N.hg38 C3N-03028 HNSCC WGS blood_normal CPT0226480002 275fae68-cebf-4eb8-bcae-77fecf1ce314_wgs_gdc_realn.bam 94354767367 BAM harmonized CPTAC3 4343c2e2-fc91-4eb6-905c-0215cb187c78 9f57f2565d15948ec2cf90637fa483c0 { 'aliquot_tag': 'ALQ_522b2df7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03028.WGS.T C3N-03028 HNSCC WGS tumor CPT0226440006 CPT0226440006.WholeGenome.RP-1303.bam 79232751776 BAM aligned CPTAC3 5b9a7990-5a0d-4c7c-b419-cbafcefac28d 20fae92ffbd7dd08316bd2db4824c1e0 { 'aliquot_tag': 'ALQ_90b604ef', 'gdc_sample_type': 'Primary Tumor' } @@ -34155,16 +36439,16 @@ C3N-03038.miRNA-Seq.A C3N-03038 LUAD miRNA-Seq tissue_normal CPT0235100009 19071 C3N-03038.miRNA-Seq.A.hg38 C3N-03038 LUAD miRNA-Seq tissue_normal CPT0235100009 a8e86484-a693-42cc-a77e-5920c2aec42a_mirnaseq_gdc_realn.bam 287330560 BAM harmonized CPTAC3 1806aac2-bec7-4961-851b-0b5fc99b81f4 77a85a0247a996c348cc2c1ae5ea670e { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03038.miRNA-Seq.T C3N-03038 LUAD miRNA-Seq tumor CPT0235090009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACTGAT_S21_L004_R1_001.unaln.bam 250753656 BAM unaligned CPTAC3 409d0198-a8a0-455a-a61b-888898707528 c67ff6dd23ab024e16c640734677b436 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor' } C3N-03038.miRNA-Seq.T.hg38 C3N-03038 LUAD miRNA-Seq tumor CPT0235090009 50c58581-6e17-45ab-93bc-cf8dec072d86_mirnaseq_gdc_realn.bam 273365279 BAM harmonized CPTAC3 9ae88f9d-d5c3-4c6a-bb8f-d277a33dddf2 8e3ab14882b7d5f5000dadd0a4200eb6 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor' } -C3N-03038.RNA-Seq.chimeric.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 b9fa04d2-8306-4b92-aba8-81ed83d1ae48.rna_seq.chimeric.gdc_realn.bam 95033033 BAM chimeric harmonized CPTAC3 c2827948-2b07-4aba-ae8c-94a914effe84 bcefdbd6b7a525a9a6d41d08b7eecc80 { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03038.RNA-Seq.chimeric.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 54df4e65-e41d-4de9-9e1b-788b13a36958.rna_seq.chimeric.gdc_realn.bam 31702937 BAM chimeric harmonized CPTAC3 5783da63-bd5e-4513-b1c8-be931b5db7f1 ed38e7f9bd74372424b0331150e9262b { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor' } -C3N-03038.RNA-Seq.genomic.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 b9fa04d2-8306-4b92-aba8-81ed83d1ae48.rna_seq.genomic.gdc_realn.bam 11575663179 BAM genomic harmonized CPTAC3 f0582c24-59fe-455d-b48a-ab4cfe9ed72d feb35d04c5a9cd6f2aa553211def5234 { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03038.RNA-Seq.genomic.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 54df4e65-e41d-4de9-9e1b-788b13a36958.rna_seq.genomic.gdc_realn.bam 13769181361 BAM genomic harmonized CPTAC3 a37119d1-7d4c-4cb0-a558-719bcf53940d 3571dc9ca15b22b20b52e0a71a182fc3 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor' } -C3N-03038.RNA-Seq.R1_L003.A C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 190621_UNC32-K00270_0184_AH7CLLBBXY_CCAAGTCT-AAGGATGA_S11_L003_R1_001.fastq.gz 4435405137 FASTQ R1_L003 unaligned CPTAC3 931a6fb3-85a0-44e0-ad49-9b4d16117981 92e639577547d9ae6096cfc66803c35a { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03038.RNA-Seq.R1_L008.T C3N-03038 LUAD RNA-Seq tumor CPT0235090009 190604_UNC32-K00270_0177_AH7F5VBBXY_ACTAAGAT-AACCGCGG_S29_L008_R1_001.fastq.gz 4244552340 FASTQ R1_L008 unaligned CPTAC3 4239c264-cf13-41ea-b256-fd8c66372843 3a4f40993e6504ccad12c9e124987221 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor' } -C3N-03038.RNA-Seq.R2_L003.A C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 190621_UNC32-K00270_0184_AH7CLLBBXY_CCAAGTCT-AAGGATGA_S11_L003_R2_001.fastq.gz 5074283143 FASTQ R2_L003 unaligned CPTAC3 e764d0bf-3f54-493c-b1d7-96ed53d5cf56 80c875ac3772eec6fdacd8ec12f23c5e { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03038.RNA-Seq.R2_L008.T C3N-03038 LUAD RNA-Seq tumor CPT0235090009 190604_UNC32-K00270_0177_AH7F5VBBXY_ACTAAGAT-AACCGCGG_S29_L008_R2_001.fastq.gz 4650188230 FASTQ R2_L008 unaligned CPTAC3 59826fe8-e4f4-4f9a-9784-a5fccc914fe1 a049d7df49a16963ae6e8acdac52ec64 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor' } -C3N-03038.RNA-Seq.transcriptome.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 b9fa04d2-8306-4b92-aba8-81ed83d1ae48.rna_seq.transcriptome.gdc_realn.bam 9259590321 BAM transcriptome harmonized CPTAC3 7226a920-bd02-4d93-a062-4a87769f410c 360afa37eaff193c9605cbdb95aaa7e9 { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03038.RNA-Seq.transcriptome.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 54df4e65-e41d-4de9-9e1b-788b13a36958.rna_seq.transcriptome.gdc_realn.bam 9103447195 BAM transcriptome harmonized CPTAC3 0b8c7931-aea2-4386-ac11-16a94552e537 b2d42f790acd6cb38ee4045e2beea2b6 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor' } +C3N-03038.RNA-Seq.chimeric.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 bfdbc179-6664-406c-ae75-aadfb7b50e69.rna_seq.chimeric.gdc_realn.bam 95018494 BAM chimeric harmonized CPTAC3 bda3058e-55bb-4dfa-b329-6a3631cdf3ea b4b605dde5281d56b66930a1d2c02347 { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03038.RNA-Seq.chimeric.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 b0f01acd-4031-48df-9db2-2a966018fcab.rna_seq.chimeric.gdc_realn.bam 31696409 BAM chimeric harmonized CPTAC3 9f15e072-12ce-45a8-9f56-ce4e472d085f c9c1135269a93fc64dd490ec7d3e7fd9 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor' } +C3N-03038.RNA-Seq.genomic.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 bfdbc179-6664-406c-ae75-aadfb7b50e69.rna_seq.genomic.gdc_realn.bam 11576999654 BAM genomic harmonized CPTAC3 4ae731c4-807a-4be0-aa39-2b9c1bf917bd 7f59829b2810b9294f3800a28ba3d784 { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03038.RNA-Seq.genomic.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 b0f01acd-4031-48df-9db2-2a966018fcab.rna_seq.genomic.gdc_realn.bam 13770169439 BAM genomic harmonized CPTAC3 412bc08d-c275-4d1b-8917-a04581775cd2 71e3faabcfa3dfce10cc5a96f2df1c81 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor' } +C3N-03038.RNA-Seq.R1_L003.A C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 190621_UNC32-K00270_0184_AH7CLLBBXY_CCAAGTCT-AAGGATGA_S11_L003_R1_001.fastq.gz 4435405137 FASTQ R1_L003 unaligned CPTAC3 931a6fb3-85a0-44e0-ad49-9b4d16117981 92e639577547d9ae6096cfc66803c35a { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03038.RNA-Seq.R1_L008.T C3N-03038 LUAD RNA-Seq tumor CPT0235090009 190604_UNC32-K00270_0177_AH7F5VBBXY_ACTAAGAT-AACCGCGG_S29_L008_R1_001.fastq.gz 4244552340 FASTQ R1_L008 unaligned CPTAC3 4239c264-cf13-41ea-b256-fd8c66372843 3a4f40993e6504ccad12c9e124987221 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03038.RNA-Seq.R2_L003.A C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 190621_UNC32-K00270_0184_AH7CLLBBXY_CCAAGTCT-AAGGATGA_S11_L003_R2_001.fastq.gz 5074283143 FASTQ R2_L003 unaligned CPTAC3 e764d0bf-3f54-493c-b1d7-96ed53d5cf56 80c875ac3772eec6fdacd8ec12f23c5e { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03038.RNA-Seq.R2_L008.T C3N-03038 LUAD RNA-Seq tumor CPT0235090009 190604_UNC32-K00270_0177_AH7F5VBBXY_ACTAAGAT-AACCGCGG_S29_L008_R2_001.fastq.gz 4650188230 FASTQ R2_L008 unaligned CPTAC3 59826fe8-e4f4-4f9a-9784-a5fccc914fe1 a049d7df49a16963ae6e8acdac52ec64 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03038.RNA-Seq.transcriptome.A.hg38 C3N-03038 LUAD RNA-Seq tissue_normal CPT0235100009 bfdbc179-6664-406c-ae75-aadfb7b50e69.rna_seq.transcriptome.gdc_realn.bam 10421659911 BAM transcriptome harmonized CPTAC3 2420294b-108e-433a-8993-668cee7e3f7b dce189b8700dda3830d36535717753a1 { 'aliquot_tag': 'ALQ_5806340e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03038.RNA-Seq.transcriptome.T.hg38 C3N-03038 LUAD RNA-Seq tumor CPT0235090009 b0f01acd-4031-48df-9db2-2a966018fcab.rna_seq.transcriptome.gdc_realn.bam 10139894158 BAM transcriptome harmonized CPTAC3 46379df9-1adb-4486-8bd8-493572d326ba ca1b20a99e7b3964060eaa924a407317 { 'aliquot_tag': 'ALQ_9e4a85da', 'gdc_sample_type': 'Primary Tumor' } C3N-03038.WGS.N C3N-03038 LUAD WGS blood_normal CPT0235210002 CPT0235210002.WholeGenome.RP-1303.bam 84117595905 BAM aligned CPTAC3 b7e1a5fb-c345-477b-a17a-06da3c069be9 b7e16d796e73aa0b23d4da257ed6ff97 { 'aliquot_tag': 'ALQ_7420b698', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03038.WGS.N.hg38 C3N-03038 LUAD WGS blood_normal CPT0235210002 1284ed6e-8d14-4e9a-939c-a4dd56937db9_wgs_gdc_realn.bam 122664877713 BAM harmonized CPTAC3 02c9e8e7-c588-4121-8138-201353f47b76 6aa410ec74d00355a66c1a643e1dd78d { 'aliquot_tag': 'ALQ_7420b698', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03038.WGS.T C3N-03038 LUAD WGS tumor CPT0235090006 CPT0235090006.WholeGenome.RP-1303.bam 77300608562 BAM aligned CPTAC3 eac6fe8d-e5cf-44d9-b17d-dd5c762ae6cc b20ec1d965aa18205e994f588e8f8fe9 { 'aliquot_tag': 'ALQ_ef5984b', 'gdc_sample_type': 'Primary Tumor' } @@ -34182,9 +36466,9 @@ C3N-03039.MethArray.Red.T C3N-03039 PDA Methylation Array tumor CPT0235230007 20 C3N-03039.miRNA-Seq.T C3N-03039 PDA miRNA-Seq tumor CPT0235230010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCCCGA_S22_L006_R1_001.unaln.bam 225601190 BAM unaligned CPTAC3 c6b4737b-c848-47cb-b910-b1076a451b02 cfaf1449a306ad165ce5aca3bc7859ab { 'aliquot_tag': 'ALQ_f9f5b595', 'gdc_sample_type': 'Primary Tumor' } C3N-03039.miRNA-Seq.T.hg38 C3N-03039 PDA miRNA-Seq tumor CPT0235230010 37cfa510-f15c-4ca1-945c-d28a08135833_mirnaseq_gdc_realn.bam 254273453 BAM harmonized CPTAC3 64fe912c-8559-472c-9319-2a13026bb38a e2c828b4d7c4e2e18d65ba4da7fbba7e { 'aliquot_tag': 'ALQ_f9f5b595', 'gdc_sample_type': 'Primary Tumor' } C3N-03039.RNA-Seq.chimeric.T.hg38 C3N-03039 PDA RNA-Seq tumor CPT0235230010 f4b4c86c-e4a0-48da-bebe-425821799f0d.rna_seq.chimeric.gdc_realn.bam 59981106 BAM chimeric harmonized CPTAC3 e27946bf-dfff-48b5-ad46-166327145c5f 3be9cd531ea4d7c923c451847a9b437b { 'aliquot_tag': 'ALQ_f9f5b595', 'gdc_sample_type': 'Primary Tumor' } -C3N-03039.RNA-Seq.genomic.T.hg38 C3N-03039 PDA RNA-Seq tumor CPT0235230010 f4b4c86c-e4a0-48da-bebe-425821799f0d.rna_seq.genomic.gdc_realn.bam 7451327900 BAM genomic harmonized CPTAC3 e5f33fa9-a333-4803-bcc1-337cb7d46c83 39e8d7d605bf5bac797d229a32c531f4 { 'aliquot_tag': 'ALQ_f9f5b595', 'gdc_sample_type': 'Primary Tumor' } -C3N-03039.RNA-Seq.R1_L002.T C3N-03039 PDA RNA-Seq tumor CPT0235230010 190614_UNC32-K00270_0182_BH7777BBXY_GCAATGCA-GGAACGTT_S8_L002_R1_001.fastq.gz 3034627423 FASTQ R1_L002 unaligned CPTAC3 ef84b358-470b-4af0-9dce-4a1dcb142ce6 986d5cbafd5221aeee0624380005d0c0 { 'aliquot_tag': 'ALQ_f9f5b595', 'gdc_sample_type': 'Primary Tumor' } -C3N-03039.RNA-Seq.R2_L002.T C3N-03039 PDA RNA-Seq tumor CPT0235230010 190614_UNC32-K00270_0182_BH7777BBXY_GCAATGCA-GGAACGTT_S8_L002_R2_001.fastq.gz 3375760731 FASTQ R2_L002 unaligned CPTAC3 e128176e-a4ee-41f5-92a0-222c59ba9e61 ba353a95717be65a065bb69ec0091c4c { 'aliquot_tag': 'ALQ_f9f5b595', 'gdc_sample_type': 'Primary Tumor' } +C3N-03039.RNA-Seq.genomic.T.hg38 C3N-03039 PDA RNA-Seq tumor CPT0235230010 f4b4c86c-e4a0-48da-bebe-425821799f0d.rna_seq.genomic.gdc_realn.bam 7451327900 BAM genomic harmonized CPTAC3 3dca0aef-74f0-4056-b437-27cbbaf59c79 39e8d7d605bf5bac797d229a32c531f4 { 'aliquot_tag': 'ALQ_f9f5b595', 'gdc_sample_type': 'Primary Tumor' } +C3N-03039.RNA-Seq.R1_L002.T C3N-03039 PDA RNA-Seq tumor CPT0235230010 190614_UNC32-K00270_0182_BH7777BBXY_GCAATGCA-GGAACGTT_S8_L002_R1_001.fastq.gz 3034627423 FASTQ R1_L002 unaligned CPTAC3 ef84b358-470b-4af0-9dce-4a1dcb142ce6 986d5cbafd5221aeee0624380005d0c0 { 'aliquot_tag': 'ALQ_f9f5b595', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03039.RNA-Seq.R2_L002.T C3N-03039 PDA RNA-Seq tumor CPT0235230010 190614_UNC32-K00270_0182_BH7777BBXY_GCAATGCA-GGAACGTT_S8_L002_R2_001.fastq.gz 3375760731 FASTQ R2_L002 unaligned CPTAC3 e128176e-a4ee-41f5-92a0-222c59ba9e61 ba353a95717be65a065bb69ec0091c4c { 'aliquot_tag': 'ALQ_f9f5b595', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-03039.RNA-Seq.transcriptome.T.hg38 C3N-03039 PDA RNA-Seq tumor CPT0235230010 f4b4c86c-e4a0-48da-bebe-425821799f0d.rna_seq.transcriptome.gdc_realn.bam 8211371181 BAM transcriptome harmonized CPTAC3 9b87bdce-50f1-45f9-babb-125b4218c2af c2db02fddf677f140a091cfbc9354907 { 'aliquot_tag': 'ALQ_f9f5b595', 'gdc_sample_type': 'Primary Tumor' } C3N-03039.WGS.N C3N-03039 PDA WGS blood_normal CPT0235410002 CPT0235410002.WholeGenome.RP-1303.bam 74506743405 BAM aligned CPTAC3 3fd72bc6-b77a-40bb-bfb9-22c2076e9689 8bc92e3c08383a75309b0847dfb828c6 { 'aliquot_tag': 'ALQ_a2795585', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03039.WGS.N.hg38 C3N-03039 PDA WGS blood_normal CPT0235410002 802fa2ab-54ca-4122-b40f-095afe4067f2_wgs_gdc_realn.bam 108088838640 BAM harmonized CPTAC3 f5dceafa-1a22-4787-81f9-466f00d3065a 7972d6e8d0bc9a315f25368a8a71767b { 'aliquot_tag': 'ALQ_a2795585', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34201,12 +36485,15 @@ C3N-03042.MethArray.Red.T C3N-03042 HNSCC Methylation Array tumor CPT0235460006 C3N-03042.miRNA-Seq.T C3N-03042 HNSCC miRNA-Seq tumor CPT0235460009 190228_UNC32-K00270_0151_AHYLY3BBXX_CCAACA_S36_L004_R1_001.unaln.bam 198811768 BAM unaligned CPTAC3 84ee3fac-ff68-447c-9154-bdf1fa5925c6 c887cbeb071c8038706bfb2f7b71fa5c { 'aliquot_tag': 'ALQ_878b501d', 'gdc_sample_type': 'Primary Tumor' } C3N-03042.miRNA-Seq.T.hg38 C3N-03042 HNSCC miRNA-Seq tumor CPT0235460009 02fc3cc1-ca99-4ce9-b646-c6231ad87abe_mirnaseq_gdc_realn.bam 217547855 BAM harmonized CPTAC3 3a636f09-04b2-4181-b587-b729697be674 9592f9375857b3f985f5bec97bcbcf55 { 'aliquot_tag': 'ALQ_878b501d', 'gdc_sample_type': 'Primary Tumor' } C3N-03042.RNA-Seq.chimeric.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 ad4aabec-216f-447c-9810-2e9dae30b7d9.rna_seq.chimeric.gdc_realn.bam 245100968 BAM chimeric harmonized CPTAC3 720cf1e1-621b-4d79-97e9-c8f477f61690 239eda37d2409f8f62b77a393ed609a5 { 'aliquot_tag': 'ALQ_878b501d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03042.RNA-Seq.genomic.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 ad4aabec-216f-447c-9810-2e9dae30b7d9.rna_seq.genomic.gdc_realn.bam 7764578457 BAM genomic harmonized CPTAC3 c78a09bd-d724-4fde-91ba-d9fef88007db 5f1f63bf2cbad2d1e1d08689c158c1ad { 'aliquot_tag': 'ALQ_878b501d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03042.RNA-Seq.R1_L001.T C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L001_R1_001.fastq.gz 3714992070 FASTQ R1_L001 unaligned CPTAC3 a8e7a7c4-a050-4674-a800-478d690f2a78 20df2bc080400e87dd446f0e4d7e5008 { 'aliquot_tag': 'ALQ_878b501d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03042.RNA-Seq.R1_.T C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 20210723_P2_D12_WB7988-plate2_S48_R1_001.fastq.gz 5002596989 FASTQ R1_ unaligned CPTAC3 354207a4-a586-4047-844e-4f8e1ac91c8f 08fb862ba894bef28cf78281faf1088b { 'aliquot_tag': 'ALQ_ae979c0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03042.RNA-Seq.R2_L001.T C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L001_R2_001.fastq.gz 4177672596 FASTQ R2_L001 unaligned CPTAC3 ada7577e-3e5c-4ab5-b817-bbdfbb5a5350 2d689efdf8895d1e2f3d5f0d9ed19e4f { 'aliquot_tag': 'ALQ_878b501d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03042.RNA-Seq.R2_.T C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 20210723_P2_D12_WB7988-plate2_S48_R2_001.fastq.gz 5116311184 FASTQ R2_ unaligned CPTAC3 2e3adfb6-5e78-41c6-9d04-e433ae7a3e6d 70d465020bb43a4be8253c24584d1443 { 'aliquot_tag': 'ALQ_ae979c0b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03042.RNA-Seq.chimeric.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 70c3d358-35d6-4a03-8861-afe610d7586e.rna_seq.chimeric.gdc_realn.bam 177966654 BAM chimeric harmonized CPTAC3 95cec6c5-7204-4136-9655-a46ce40bf83f cfa2cf450c7045f9b8e1d6e7c7faba6a { 'aliquot_tag': 'ALQ_ae979c0b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03042.RNA-Seq.genomic.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 ad4aabec-216f-447c-9810-2e9dae30b7d9.rna_seq.genomic.gdc_realn.bam 7764578457 BAM genomic harmonized CPTAC3 074018e0-3535-430f-a10b-906e7946dc94 5f1f63bf2cbad2d1e1d08689c158c1ad { 'aliquot_tag': 'ALQ_878b501d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03042.RNA-Seq.genomic.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 70c3d358-35d6-4a03-8861-afe610d7586e.rna_seq.genomic.gdc_realn.bam 8468331913 BAM genomic harmonized CPTAC3 82232093-b113-4ff4-a4ec-200f0e0ea84c 18f7d2692ee01eec1300e8be26944374 { 'aliquot_tag': 'ALQ_ae979c0b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03042.RNA-Seq.R1_L001.T C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L001_R1_001.fastq.gz 3714992070 FASTQ R1_L001 unaligned CPTAC3 a8e7a7c4-a050-4674-a800-478d690f2a78 20df2bc080400e87dd446f0e4d7e5008 { 'aliquot_tag': 'ALQ_878b501d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03042.RNA-Seq.R2_L001.T C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 190328_UNC31-K00269_0204_BH5F5NBBXY_CTTGTA_S3_L001_R2_001.fastq.gz 4177672596 FASTQ R2_L001 unaligned CPTAC3 ada7577e-3e5c-4ab5-b817-bbdfbb5a5350 2d689efdf8895d1e2f3d5f0d9ed19e4f { 'aliquot_tag': 'ALQ_878b501d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03042.RNA-Seq.T C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 20210723_P2_D12_WB7988-plate2_S48_R1_001.fastq.gz 5002596989 FASTQ unaligned CPTAC3 354207a4-a586-4047-844e-4f8e1ac91c8f 08fb862ba894bef28cf78281faf1088b +C3N-03042.RNA-Seq.T C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 20210723_P2_D12_WB7988-plate2_S48_R2_001.fastq.gz 5116311184 FASTQ unaligned CPTAC3 2e3adfb6-5e78-41c6-9d04-e433ae7a3e6d 70d465020bb43a4be8253c24584d1443 C3N-03042.RNA-Seq.transcriptome.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235460009 ad4aabec-216f-447c-9810-2e9dae30b7d9.rna_seq.transcriptome.gdc_realn.bam 11380213402 BAM transcriptome harmonized CPTAC3 2c041934-cee6-44d5-8c0c-fe500da61d9d 1f8f7025da7cfab29b95bb58b34f47fb { 'aliquot_tag': 'ALQ_878b501d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03042.RNA-Seq.transcriptome.T.hg38 C3N-03042 HNSCC RNA-Seq tumor CPT0235520011 70c3d358-35d6-4a03-8861-afe610d7586e.rna_seq.transcriptome.gdc_realn.bam 4904081610 BAM transcriptome harmonized CPTAC3 6706bede-ff89-4939-bf7a-d6e1eb277b46 318ef462dbbcd097205c49aafe5d9037 { 'aliquot_tag': 'ALQ_ae979c0b', 'gdc_sample_type': 'Primary Tumor' } C3N-03042.WGS.N C3N-03042 HNSCC WGS blood_normal CPT0235610002 CPT0235610002.WholeGenome.RP-1303.bam 76088853823 BAM aligned CPTAC3 5d3f1a67-596a-4b52-a516-d0205f00545c 851ea8bdd348d4e23d4ef84ba873a416 { 'aliquot_tag': 'ALQ_efb1f48e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03042.WGS.N.hg38 C3N-03042 HNSCC WGS blood_normal CPT0235610002 d48dae04-e90c-461b-a8eb-80722051857c_wgs_gdc_realn.bam 110112924403 BAM harmonized CPTAC3 134fbb2b-6a53-4e4e-ae29-760e6bd8cbf5 f4264a63268a16d33b820f2a7fd333f5 { 'aliquot_tag': 'ALQ_efb1f48e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03042.WGS.T C3N-03042 HNSCC WGS tumor CPT0235460006 CPT0235460006.WholeGenome.RP-1303.bam 84095863726 BAM aligned CPTAC3 ad471ebf-2aac-448c-8af4-bffa7f8658ec 02207c7afb217c0c462d35da458098c6 { 'aliquot_tag': 'ALQ_17344d8c', 'gdc_sample_type': 'Primary Tumor' } @@ -34217,18 +36504,18 @@ C3N-03042.WXS.T C3N-03042 HNSCC WXS tumor CPT0235460006 CPT0235460006.WholeExome C3N-03042.WXS.T.hg38 C3N-03042 HNSCC WXS tumor CPT0235460006 385ba2e4-215b-41d3-898f-70ce3b49122a_wxs_gdc_realn.bam 35970374203 BAM harmonized CPTAC3 78a89d30-eb59-4b4e-a7d5-50435b2c6740 61711870f441841dd49513c5785bdf5f { 'aliquot_tag': 'ALQ_17344d8c', 'gdc_sample_type': 'Primary Tumor' } C3N-03044.DUP_267c0fef.miRNA-Seq.T C3N-03044 UCEC miRNA-Seq tumor CPT0235720023 190508_UNC31-K00269_0215_BH7FYKBBXY_TAATCG_S42_L002_R1_001.unaln.bam 210091631 BAM unaligned CPTAC3 8c82c53b-a983-4195-9cd9-b238829d6631 b171fe7138b57e46389cbe36c352744f { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } C3N-03044.DUP_267c0fef.miRNA-Seq.T.hg38 C3N-03044 UCEC miRNA-Seq tumor CPT0235720023 316f93ad-32ee-4eca-85ad-7624a099254a_mirnaseq_gdc_realn.bam 234302210 BAM harmonized CPTAC3 fee10f49-db41-4b77-bb89-2beb8381b06b 89d119f2572b7be61d26163a9f658824 { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } -C3N-03044.DUP_267c0fef.RNA-Seq.chimeric.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 f8eee64a-3187-472f-ab9a-51092484b354.rna_seq.chimeric.gdc_realn.bam 29644590 BAM chimeric harmonized CPTAC3 aded4537-64a8-4000-8969-ba33b5e02072 7fabad4bc2b6c2b8231ca92f197f63ad { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } -C3N-03044.DUP_267c0fef.RNA-Seq.genomic.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 f8eee64a-3187-472f-ab9a-51092484b354.rna_seq.genomic.gdc_realn.bam 7210106340 BAM genomic harmonized CPTAC3 d489e277-abf3-4ed3-b50f-33b37c7f304d 8b03aa9f3cc72bb644ec2014d32caa93 { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } -C3N-03044.DUP_267c0fef.RNA-Seq.R1_L007.T C3N-03044 UCEC RNA-Seq tumor CPT0235720023 190501_UNC31-K00269_0213_BH5JYFBBXY_GCGCAAGC-TCACGCCG_S28_L007_R1_001.fastq.gz 3372156198 FASTQ R1_L007 unaligned CPTAC3 7b67cfae-f36c-4ca8-9b52-fd13fd009f90 e47b0feab4321b61d7d8c16cfeac2d50 { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } -C3N-03044.DUP_267c0fef.RNA-Seq.R2_L007.T C3N-03044 UCEC RNA-Seq tumor CPT0235720023 190501_UNC31-K00269_0213_BH5JYFBBXY_GCGCAAGC-TCACGCCG_S28_L007_R2_001.fastq.gz 3731757645 FASTQ R2_L007 unaligned CPTAC3 ef49d83c-9edc-4fb2-a2e3-bd7193041582 0ca26d9fc23d30342a125173f7515eaf { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } -C3N-03044.DUP_267c0fef.RNA-Seq.transcriptome.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 f8eee64a-3187-472f-ab9a-51092484b354.rna_seq.transcriptome.gdc_realn.bam 8583159597 BAM transcriptome harmonized CPTAC3 637fb862-949f-4af2-bd42-2854706a0346 1f00a4872387a4d40201b117ba72d78b { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } +C3N-03044.DUP_267c0fef.RNA-Seq.chimeric.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 34b5b847-0341-4880-a179-ccab6cd56893.rna_seq.chimeric.gdc_realn.bam 29624853 BAM chimeric harmonized CPTAC3 a9783d67-3a8f-4d77-8a43-56d01a594b8f 9ae37473d153539b869aa6edfacfb714 { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } +C3N-03044.DUP_267c0fef.RNA-Seq.genomic.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 34b5b847-0341-4880-a179-ccab6cd56893.rna_seq.genomic.gdc_realn.bam 7211090689 BAM genomic harmonized CPTAC3 ffb60aad-8d42-4285-bdbd-ef10dfbd47b6 10b7d5e9a062d91d5a2f72a3903eb318 { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } +C3N-03044.DUP_267c0fef.RNA-Seq.R1_L007.T C3N-03044 UCEC RNA-Seq tumor CPT0235720023 190501_UNC31-K00269_0213_BH5JYFBBXY_GCGCAAGC-TCACGCCG_S28_L007_R1_001.fastq.gz 3372156198 FASTQ R1_L007 unaligned CPTAC3 7b67cfae-f36c-4ca8-9b52-fd13fd009f90 e47b0feab4321b61d7d8c16cfeac2d50 { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot', 'read': 'R1', 'lane': 'L007' } +C3N-03044.DUP_267c0fef.RNA-Seq.R2_L007.T C3N-03044 UCEC RNA-Seq tumor CPT0235720023 190501_UNC31-K00269_0213_BH5JYFBBXY_GCGCAAGC-TCACGCCG_S28_L007_R2_001.fastq.gz 3731757645 FASTQ R2_L007 unaligned CPTAC3 ef49d83c-9edc-4fb2-a2e3-bd7193041582 0ca26d9fc23d30342a125173f7515eaf { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot', 'read': 'R2', 'lane': 'L007' } +C3N-03044.DUP_267c0fef.RNA-Seq.transcriptome.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235720023 34b5b847-0341-4880-a179-ccab6cd56893.rna_seq.transcriptome.gdc_realn.bam 9856639090 BAM transcriptome harmonized CPTAC3 668a34d9-d7d5-43e6-b901-4c1e8cbebc7d 00188dbbf64aaef3d463e12dbf44b185 { 'aliquot_tag': 'DUP_267c0fef', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } C3N-03044.DUP_d44fd063.miRNA-Seq.T C3N-03044 UCEC miRNA-Seq tumor CPT0235730040 190508_UNC31-K00269_0215_BH7FYKBBXY_TACAGC_S43_L002_R1_001.unaln.bam 258538636 BAM unaligned CPTAC3 b0ce47a0-34c1-4f25-8b3e-9e67c9e88b55 0840bfc57b224ec03bc09209398e73aa { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } C3N-03044.DUP_d44fd063.miRNA-Seq.T.hg38 C3N-03044 UCEC miRNA-Seq tumor CPT0235730040 a6ce9d45-7de2-4b03-9e27-8cf03a3c7b19_mirnaseq_gdc_realn.bam 285787402 BAM harmonized CPTAC3 7f99812a-52d1-4cf6-964f-2722684a857d 0fc9f8353e5b91bfd86127b7fb6f0bb3 { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } -C3N-03044.DUP_d44fd063.RNA-Seq.chimeric.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 bae25404-15a6-42bf-bfae-4d247472d2cc.rna_seq.chimeric.gdc_realn.bam 34050783 BAM chimeric harmonized CPTAC3 6f4c3d49-0872-4d6a-a334-332d26249705 233d383afd6d621149ce69ff25f97b89 { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } -C3N-03044.DUP_d44fd063.RNA-Seq.genomic.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 bae25404-15a6-42bf-bfae-4d247472d2cc.rna_seq.genomic.gdc_realn.bam 8214255585 BAM genomic harmonized CPTAC3 e820ccfd-4f69-4d38-b577-aa7e90e05d5b 8b0388fa869ef037b8386a0dfc797069 { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } -C3N-03044.DUP_d44fd063.RNA-Seq.R1_L007.T C3N-03044 UCEC RNA-Seq tumor CPT0235730040 190501_UNC31-K00269_0213_BH5JYFBBXY_AAGATACT-ACTTACAT_S27_L007_R1_001.fastq.gz 4112644391 FASTQ R1_L007 unaligned CPTAC3 635dfd92-32d9-4efd-b888-a90acda562f6 b23ec9e12de44f9b2e52c65e1a32d8c7 { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } -C3N-03044.DUP_d44fd063.RNA-Seq.R2_L007.T C3N-03044 UCEC RNA-Seq tumor CPT0235730040 190501_UNC31-K00269_0213_BH5JYFBBXY_AAGATACT-ACTTACAT_S27_L007_R2_001.fastq.gz 4608523488 FASTQ R2_L007 unaligned CPTAC3 74bc5cee-2633-4d27-ab8b-1ed835be5808 5e4e15f7ec635d3064962e27340b705a { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } -C3N-03044.DUP_d44fd063.RNA-Seq.transcriptome.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 bae25404-15a6-42bf-bfae-4d247472d2cc.rna_seq.transcriptome.gdc_realn.bam 10789164400 BAM transcriptome harmonized CPTAC3 5d8a3bd1-4547-4a6d-a525-baee2e8ee825 82314ba5c9c7241872685a026d3a2ec9 { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } +C3N-03044.DUP_d44fd063.RNA-Seq.chimeric.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 0d85fdd0-f690-4c0a-9e6e-d6683655aeec.rna_seq.chimeric.gdc_realn.bam 34022394 BAM chimeric harmonized CPTAC3 6f5349a7-01ec-4716-9d66-378104707102 d7b247860bce72ebb7b5aca3d584421e { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } +C3N-03044.DUP_d44fd063.RNA-Seq.genomic.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 0d85fdd0-f690-4c0a-9e6e-d6683655aeec.rna_seq.genomic.gdc_realn.bam 8215362411 BAM genomic harmonized CPTAC3 7bbc3259-27db-4c43-9031-c8a09c615c56 bcb70f2e22072f92b175721e081c14f5 { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } +C3N-03044.DUP_d44fd063.RNA-Seq.R1_L007.T C3N-03044 UCEC RNA-Seq tumor CPT0235730040 190501_UNC31-K00269_0213_BH5JYFBBXY_AAGATACT-ACTTACAT_S27_L007_R1_001.fastq.gz 4112644391 FASTQ R1_L007 unaligned CPTAC3 635dfd92-32d9-4efd-b888-a90acda562f6 b23ec9e12de44f9b2e52c65e1a32d8c7 { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot', 'read': 'R1', 'lane': 'L007' } +C3N-03044.DUP_d44fd063.RNA-Seq.R2_L007.T C3N-03044 UCEC RNA-Seq tumor CPT0235730040 190501_UNC31-K00269_0213_BH5JYFBBXY_AAGATACT-ACTTACAT_S27_L007_R2_001.fastq.gz 4608523488 FASTQ R2_L007 unaligned CPTAC3 74bc5cee-2633-4d27-ab8b-1ed835be5808 5e4e15f7ec635d3064962e27340b705a { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot', 'read': 'R2', 'lane': 'L007' } +C3N-03044.DUP_d44fd063.RNA-Seq.transcriptome.T.hg38 C3N-03044 UCEC RNA-Seq tumor CPT0235730040 0d85fdd0-f690-4c0a-9e6e-d6683655aeec.rna_seq.transcriptome.gdc_realn.bam 12466738562 BAM transcriptome harmonized CPTAC3 645f2765-bc00-4732-8a2c-fd3dcfb1504d 8e26d09e4afa244f4c42ccad44f033f1 { 'aliquot_tag': 'DUP_d44fd063', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: UCEC BioTEXT Pilot' } C3N-03045.MethArray.Green.T C3N-03045 HNSCC Methylation Array tumor CPT0235910006 203219650096_R06C01_Grn.idat 13676211 IDAT Green NA CPTAC3 84ea750a-d0b6-428a-9c6a-44b891c44746 a3eb270bedd6dd4c5bd7be6f15339b80 { 'aliquot_tag': 'ALQ_198a8242', 'gdc_sample_type': 'Primary Tumor' } C3N-03045.MethArray.Red.T C3N-03045 HNSCC Methylation Array tumor CPT0235910006 203219650096_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 998daa5c-b485-461a-b7d6-7413156c0116 40948490138a05f063ad3116dfaaba87 { 'aliquot_tag': 'ALQ_198a8242', 'gdc_sample_type': 'Primary Tumor' } C3N-03045.miRNA-Seq.A C3N-03045 HNSCC miRNA-Seq tissue_normal CPT0235920006 190828_UNC32-K00270_0200_BH7GVJBBXY_ATCACG_S138_L007_R1_001.unaln.bam 334514760 BAM unaligned CPTAC3 e494a771-7ef6-43eb-901a-abb9aad58495 a08f6aa3fc980536c117ca9f72d7c3fe { 'aliquot_tag': 'ALQ_5e2af892', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -34237,16 +36524,19 @@ C3N-03045.miRNA-Seq.T C3N-03045 HNSCC miRNA-Seq tumor CPT0235910009 190228_UNC32 C3N-03045.miRNA-Seq.T.hg38 C3N-03045 HNSCC miRNA-Seq tumor CPT0235910009 23232411-e126-4e4a-a591-87b97f95aabf_mirnaseq_gdc_realn.bam 213988587 BAM harmonized CPTAC3 12cc495e-5ec4-424d-9ca4-0cf8779e9273 d7d130b6e7b722f6627e692c30835f9a { 'aliquot_tag': 'ALQ_89359fd3', 'gdc_sample_type': 'Primary Tumor' } C3N-03045.RNA-Seq.chimeric.A.hg38 C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 8fcbf45d-bef1-4af4-a543-0f6d50e0454f.rna_seq.chimeric.gdc_realn.bam 39497922 BAM chimeric harmonized CPTAC3 850081a2-8ff9-4750-8166-3395671f9b69 a1e5becc3be5b610329fbae00242ef6a { 'aliquot_tag': 'ALQ_5e2af892', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03045.RNA-Seq.chimeric.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 bfb3a4ae-1dc8-4bf4-8fdd-13d3878f4d32.rna_seq.chimeric.gdc_realn.bam 190534477 BAM chimeric harmonized CPTAC3 ced596ab-f959-4476-aed7-ea43defb2401 d3ba14364f4647f0b8d43ca7dcfccfc0 { 'aliquot_tag': 'ALQ_89359fd3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03045.RNA-Seq.genomic.A.hg38 C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 8fcbf45d-bef1-4af4-a543-0f6d50e0454f.rna_seq.genomic.gdc_realn.bam 8981648015 BAM genomic harmonized CPTAC3 3ad7f3d0-4636-41d9-81e3-905da16d708a 62ca06a452c4823ede74a63ae688f587 { 'aliquot_tag': 'ALQ_5e2af892', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03045.RNA-Seq.genomic.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 bfb3a4ae-1dc8-4bf4-8fdd-13d3878f4d32.rna_seq.genomic.gdc_realn.bam 7104796286 BAM genomic harmonized CPTAC3 0f8a3a30-c250-493f-a930-71e15e26c977 6e742f402c6ff388273eff25adb625ad { 'aliquot_tag': 'ALQ_89359fd3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03045.RNA-Seq.R1_L001.T C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L001_R1_001.fastq.gz 3378039011 FASTQ R1_L001 unaligned CPTAC3 86e2ae86-9237-4ce6-a60c-c034295c61d9 e89107dceb832300ea18ca38d088d0c0 { 'aliquot_tag': 'ALQ_89359fd3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03045.RNA-Seq.R1_L003.A C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGCGGTT-AGCGCTAG_S14_L003_R1_001.fastq.gz 4300086770 FASTQ R1_L003 unaligned CPTAC3 ad0e1d1d-2add-490c-9b4a-a42cbe1a700d 299eb0ecf37033410b66962ff2a1e644 { 'aliquot_tag': 'ALQ_5e2af892', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03045.RNA-Seq.R1_.T C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 20210723_P2_H12_WB7988-plate2_S96_R1_001.fastq.gz 5494038736 FASTQ R1_ unaligned CPTAC3 84e55c55-19a1-40fc-aa30-6faf596b465b a3c0e5a7d385d78ef74da9a2a2724663 { 'aliquot_tag': 'ALQ_e43575c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03045.RNA-Seq.R2_L001.T C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L001_R2_001.fastq.gz 3750748630 FASTQ R2_L001 unaligned CPTAC3 0c8e7014-ca9c-4c89-a213-3a30d20ebbfe 5b0e4866a05c0f3624f422b6a5dd2873 { 'aliquot_tag': 'ALQ_89359fd3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03045.RNA-Seq.R2_L003.A C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGCGGTT-AGCGCTAG_S14_L003_R2_001.fastq.gz 4758883857 FASTQ R2_L003 unaligned CPTAC3 528003dd-3a6c-47ba-9a80-2edc44c76635 c167ffdc7050c30c4e69c6290456cd73 { 'aliquot_tag': 'ALQ_5e2af892', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03045.RNA-Seq.R2_.T C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 20210723_P2_H12_WB7988-plate2_S96_R2_001.fastq.gz 5655919566 FASTQ R2_ unaligned CPTAC3 392d8056-5d1a-4fb0-9f81-5e93e32ea3f9 127cacba4c1e127e9b361f1eb2d07f8c { 'aliquot_tag': 'ALQ_e43575c0', 'gdc_sample_type': 'Primary Tumor' } +C3N-03045.RNA-Seq.chimeric.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 9bfe1f0c-f85c-4bee-a657-512e3bce8bf1.rna_seq.chimeric.gdc_realn.bam 112401449 BAM chimeric harmonized CPTAC3 342f7790-247b-4790-a959-5310a518e6a4 b032f28da24f90b1a1bd21658a63805e { 'aliquot_tag': 'ALQ_e43575c0', 'gdc_sample_type': 'Primary Tumor' } +C3N-03045.RNA-Seq.genomic.A.hg38 C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 8fcbf45d-bef1-4af4-a543-0f6d50e0454f.rna_seq.genomic.gdc_realn.bam 8981648015 BAM genomic harmonized CPTAC3 842fb05c-af0a-4de6-98d2-92b30d830066 62ca06a452c4823ede74a63ae688f587 { 'aliquot_tag': 'ALQ_5e2af892', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03045.RNA-Seq.genomic.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 bfb3a4ae-1dc8-4bf4-8fdd-13d3878f4d32.rna_seq.genomic.gdc_realn.bam 7104796286 BAM genomic harmonized CPTAC3 b32d1b1b-6682-4a95-bc6a-3770daea0df0 6e742f402c6ff388273eff25adb625ad { 'aliquot_tag': 'ALQ_89359fd3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03045.RNA-Seq.genomic.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 9bfe1f0c-f85c-4bee-a657-512e3bce8bf1.rna_seq.genomic.gdc_realn.bam 10025747332 BAM genomic harmonized CPTAC3 cd414c5d-4d37-4c74-8182-1b87dda1e4a2 2a617e6d6772e70178cbbfb67e27d5f4 { 'aliquot_tag': 'ALQ_e43575c0', 'gdc_sample_type': 'Primary Tumor' } +C3N-03045.RNA-Seq.R1_L001.T C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L001_R1_001.fastq.gz 3378039011 FASTQ R1_L001 unaligned CPTAC3 86e2ae86-9237-4ce6-a60c-c034295c61d9 e89107dceb832300ea18ca38d088d0c0 { 'aliquot_tag': 'ALQ_89359fd3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03045.RNA-Seq.R1_L003.A C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGCGGTT-AGCGCTAG_S14_L003_R1_001.fastq.gz 4300086770 FASTQ R1_L003 unaligned CPTAC3 ad0e1d1d-2add-490c-9b4a-a42cbe1a700d 299eb0ecf37033410b66962ff2a1e644 { 'aliquot_tag': 'ALQ_5e2af892', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03045.RNA-Seq.R2_L001.T C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 190328_UNC31-K00269_0204_BH5F5NBBXY_AGTCAA_S2_L001_R2_001.fastq.gz 3750748630 FASTQ R2_L001 unaligned CPTAC3 0c8e7014-ca9c-4c89-a213-3a30d20ebbfe 5b0e4866a05c0f3624f422b6a5dd2873 { 'aliquot_tag': 'ALQ_89359fd3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03045.RNA-Seq.R2_L003.A C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGCGGTT-AGCGCTAG_S14_L003_R2_001.fastq.gz 4758883857 FASTQ R2_L003 unaligned CPTAC3 528003dd-3a6c-47ba-9a80-2edc44c76635 c167ffdc7050c30c4e69c6290456cd73 { 'aliquot_tag': 'ALQ_5e2af892', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03045.RNA-Seq.T C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 20210723_P2_H12_WB7988-plate2_S96_R1_001.fastq.gz 5494038736 FASTQ unaligned CPTAC3 84e55c55-19a1-40fc-aa30-6faf596b465b a3c0e5a7d385d78ef74da9a2a2724663 +C3N-03045.RNA-Seq.T C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 20210723_P2_H12_WB7988-plate2_S96_R2_001.fastq.gz 5655919566 FASTQ unaligned CPTAC3 392d8056-5d1a-4fb0-9f81-5e93e32ea3f9 127cacba4c1e127e9b361f1eb2d07f8c C3N-03045.RNA-Seq.transcriptome.A.hg38 C3N-03045 HNSCC RNA-Seq tissue_normal CPT0235920006 8fcbf45d-bef1-4af4-a543-0f6d50e0454f.rna_seq.transcriptome.gdc_realn.bam 13070985296 BAM transcriptome harmonized CPTAC3 80382b1d-7630-4f62-8f99-64fb4d2bd862 c78226e771001f5b885d5134bf6bde5a { 'aliquot_tag': 'ALQ_5e2af892', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03045.RNA-Seq.transcriptome.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235910009 bfb3a4ae-1dc8-4bf4-8fdd-13d3878f4d32.rna_seq.transcriptome.gdc_realn.bam 10972706223 BAM transcriptome harmonized CPTAC3 c5392695-267c-4bf3-a229-9b863b6cc7e2 344ace913325caa82a2ea38f770533bb { 'aliquot_tag': 'ALQ_89359fd3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03045.RNA-Seq.transcriptome.T.hg38 C3N-03045 HNSCC RNA-Seq tumor CPT0235930011 9bfe1f0c-f85c-4bee-a657-512e3bce8bf1.rna_seq.transcriptome.gdc_realn.bam 9109063769 BAM transcriptome harmonized CPTAC3 796420e7-93f6-410c-9bb0-72402258edf6 f676a53f2a24ce0898b3095d47530bc3 { 'aliquot_tag': 'ALQ_e43575c0', 'gdc_sample_type': 'Primary Tumor' } C3N-03045.WGS.N C3N-03045 HNSCC WGS blood_normal CPT0235970002 CPT0235970002.WholeGenome.RP-1303.bam 68774900112 BAM aligned CPTAC3 3c7d7521-cab0-4536-8786-b9a982a0e4d5 5644231c4693ea76cc92b19b0f2bbaaf { 'aliquot_tag': 'ALQ_91a7b3fb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03045.WGS.N.hg38 C3N-03045 HNSCC WGS blood_normal CPT0235970002 10aa4de5-0954-48a0-8eb0-79762083515d_wgs_gdc_realn.bam 100490045496 BAM harmonized CPTAC3 e8adbc66-091f-40c5-bb73-d39fa938795a 3e841536b1ccb89f12ff4a7431f85d61 { 'aliquot_tag': 'ALQ_91a7b3fb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03045.WGS.T C3N-03045 HNSCC WGS tumor CPT0235910006 CPT0235910006.WholeGenome.RP-1303.bam 70038779528 BAM aligned CPTAC3 3b8fbddc-0ad5-4214-b892-f4294562cfb8 afaeadb3c42e57562c8bdb91860324de { 'aliquot_tag': 'ALQ_198a8242', 'gdc_sample_type': 'Primary Tumor' } @@ -34267,10 +36557,10 @@ C3N-03051.RNA-Seq.chimeric.A.hg38 C3N-03051 LSCC RNA-Seq tissue_normal CPT020878 C3N-03051.RNA-Seq.chimeric.T.hg38 C3N-03051 LSCC RNA-Seq tumor CPT0208770009 c69aaab4-8a87-4560-a8bd-5373c6cd2748.rna_seq.chimeric.gdc_realn.bam 110730853 BAM chimeric harmonized CPTAC3 f06fc7f1-cf44-4281-bed0-ab9ae4fb0f26 388e70c0daf89946090881bbab33773e { 'aliquot_tag': 'ALQ_d3276d20', 'gdc_sample_type': 'Primary Tumor' } C3N-03051.RNA-Seq.genomic.A.hg38 C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 6e14b4ab-49e6-4aac-b3e2-a88092666049.rna_seq.genomic.gdc_realn.bam 8373570435 BAM genomic harmonized CPTAC3 0cb8acde-7a63-45d5-bfad-810f8895d931 3cc995ca71aff966c0641faf06a46341 { 'aliquot_tag': 'ALQ_5177faf1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03051.RNA-Seq.genomic.T.hg38 C3N-03051 LSCC RNA-Seq tumor CPT0208770009 c69aaab4-8a87-4560-a8bd-5373c6cd2748.rna_seq.genomic.gdc_realn.bam 8860363820 BAM genomic harmonized CPTAC3 29424dd8-53c2-4585-85af-589f43b6a665 5af8516fe57c0971dcd6470010ddc657 { 'aliquot_tag': 'ALQ_d3276d20', 'gdc_sample_type': 'Primary Tumor' } -C3N-03051.RNA-Seq.R1_L001.T C3N-03051 LSCC RNA-Seq tumor CPT0208770009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4016798966 FASTQ R1_L001 unaligned CPTAC3 20589f37-506a-444f-ae0a-75610757188c cb1071549dc0a6be7eaa5adc84bd94e5 { 'aliquot_tag': 'ALQ_d3276d20', 'gdc_sample_type': 'Primary Tumor' } -C3N-03051.RNA-Seq.R1_L008.A C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3960571449 FASTQ R1_L008 unaligned CPTAC3 331e2523-a47e-42a0-8ee6-1604987c2fe5 f30b0cbba70368553c5ee9c10fa3e65e { 'aliquot_tag': 'ALQ_5177faf1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03051.RNA-Seq.R2_L001.T C3N-03051 LSCC RNA-Seq tumor CPT0208770009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4386670675 FASTQ R2_L001 unaligned CPTAC3 f964c01f-7ed0-4593-b885-d6664e66a9d2 806db720e9207738fa3a0150170d8143 { 'aliquot_tag': 'ALQ_d3276d20', 'gdc_sample_type': 'Primary Tumor' } -C3N-03051.RNA-Seq.R2_L008.A C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 4489845502 FASTQ R2_L008 unaligned CPTAC3 cd75c9e7-af96-432c-ac24-191a26c0c321 32fcc6241b0a3fb02796d9878825c801 { 'aliquot_tag': 'ALQ_5177faf1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03051.RNA-Seq.R1_L001.T C3N-03051 LSCC RNA-Seq tumor CPT0208770009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L001_R1_001.fastq.gz 4016798966 FASTQ R1_L001 unaligned CPTAC3 20589f37-506a-444f-ae0a-75610757188c cb1071549dc0a6be7eaa5adc84bd94e5 { 'aliquot_tag': 'ALQ_d3276d20', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03051.RNA-Seq.R1_L008.A C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L008_R1_001.fastq.gz 3960571449 FASTQ R1_L008 unaligned CPTAC3 331e2523-a47e-42a0-8ee6-1604987c2fe5 f30b0cbba70368553c5ee9c10fa3e65e { 'aliquot_tag': 'ALQ_5177faf1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-03051.RNA-Seq.R2_L001.T C3N-03051 LSCC RNA-Seq tumor CPT0208770009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATTCCT_S4_L001_R2_001.fastq.gz 4386670675 FASTQ R2_L001 unaligned CPTAC3 f964c01f-7ed0-4593-b885-d6664e66a9d2 806db720e9207738fa3a0150170d8143 { 'aliquot_tag': 'ALQ_d3276d20', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03051.RNA-Seq.R2_L008.A C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 190208_UNC32-K00270_0145_AH3VHMBBXY_GCCAAT_S6_L008_R2_001.fastq.gz 4489845502 FASTQ R2_L008 unaligned CPTAC3 cd75c9e7-af96-432c-ac24-191a26c0c321 32fcc6241b0a3fb02796d9878825c801 { 'aliquot_tag': 'ALQ_5177faf1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-03051.RNA-Seq.transcriptome.A.hg38 C3N-03051 LSCC RNA-Seq tissue_normal CPT0208780009 6e14b4ab-49e6-4aac-b3e2-a88092666049.rna_seq.transcriptome.gdc_realn.bam 10288730011 BAM transcriptome harmonized CPTAC3 abe6c5ff-36a6-4515-a7a9-462a9834c78b caa6870fdc601a2012bf80df31794ac2 { 'aliquot_tag': 'ALQ_5177faf1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03051.RNA-Seq.transcriptome.T.hg38 C3N-03051 LSCC RNA-Seq tumor CPT0208770009 c69aaab4-8a87-4560-a8bd-5373c6cd2748.rna_seq.transcriptome.gdc_realn.bam 11424113226 BAM transcriptome harmonized CPTAC3 f65c95d3-2b30-4394-9bf2-5f21854d250e 725c1a009f25634eb967b45064cdafbb { 'aliquot_tag': 'ALQ_d3276d20', 'gdc_sample_type': 'Primary Tumor' } C3N-03051.WGS.N C3N-03051 LSCC WGS blood_normal CPT0208820002 CPT0208820002.WholeGenome.RP-1303.bam 119987787419 BAM aligned CPTAC3 207090b0-9d22-493c-87b5-7194211a6170 9436946e9445a83ac2b96eadbc5a00a2 { 'aliquot_tag': 'ALQ_7d43890d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34289,16 +36579,16 @@ C3N-03052.MethArray.Red.A C3N-03052 LUAD Methylation Array tissue_normal CPT0236 C3N-03052.MethArray.Red.T C3N-03052 LUAD Methylation Array tumor CPT0236000012 203561620132_R08C01_Red.idat 13676211 IDAT Red NA CPTAC3 e8e0414b-c21b-4f12-9a43-0de4ae21d8ad 27238b66fb8a8ee587075d948c6f50f9 { 'aliquot_tag': 'ALQ_2c7b15ff', 'gdc_sample_type': 'Primary Tumor' } C3N-03052.miRNA-Seq.T C3N-03052 LUAD miRNA-Seq tumor CPT0236000019 190813_UNC32-K00270_0196_AH5MCWBBXY_CACGAT_S16_L003_R1_001.unaln.bam 293679585 BAM unaligned CPTAC3 e6244bf5-2255-4158-bbae-390c94294047 344396b6b23733df9662df0e01f827fd { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor' } C3N-03052.miRNA-Seq.T.hg38 C3N-03052 LUAD miRNA-Seq tumor CPT0236000019 5d619839-f14c-4c48-97eb-2ea070df4421_mirnaseq_gdc_realn.bam 325382742 BAM harmonized CPTAC3 a6dafdeb-44bb-4ca1-8dfa-85c390fcba45 f5b5c7855d4aa492c1f73e4b9349c7fa { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor' } -C3N-03052.RNA-Seq.chimeric.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 8eabf8d6-aea7-44e5-a1e0-964198d18760.rna_seq.chimeric.gdc_realn.bam 38841703 BAM chimeric harmonized CPTAC3 2c43b908-f613-43c5-909b-72f9d5e2927a 8ad6494925658cf231d5f7ea2dd50594 { 'aliquot_tag': 'ALQ_ff155d63', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03052.RNA-Seq.chimeric.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 9a6a4d20-2b71-41d0-9dc1-45616cd0a89a.rna_seq.chimeric.gdc_realn.bam 41307214 BAM chimeric harmonized CPTAC3 0c5ce83e-b223-46fa-be4e-e20bfba835a4 ce1ef786e6754a62aee836cf7342538d { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor' } -C3N-03052.RNA-Seq.genomic.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 8eabf8d6-aea7-44e5-a1e0-964198d18760.rna_seq.genomic.gdc_realn.bam 8986650161 BAM genomic harmonized CPTAC3 b1257317-f9a5-46fb-b3f6-18b9dc75b2d9 ffe8dbed366ffcbdee632594df4f340d { 'aliquot_tag': 'ALQ_ff155d63', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03052.RNA-Seq.genomic.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 9a6a4d20-2b71-41d0-9dc1-45616cd0a89a.rna_seq.genomic.gdc_realn.bam 10112283997 BAM genomic harmonized CPTAC3 e8575bc8-ea5c-4a79-9bb7-5aa8286ecaff 98d7a430a0adbca64d7917fa6c62133a { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor' } -C3N-03052.RNA-Seq.R1_L003.A C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 190702_UNC32-K00270_0187_AH7FK2BBXY_GGCTTAAG-TCGTGACC_S12_L003_R1_001.fastq.gz 4594305201 FASTQ R1_L003 unaligned CPTAC3 13e423e6-3ec8-4dec-8706-a3c5fbf34991 2009a572201b3ff14ace1ba9f245733f { 'aliquot_tag': 'ALQ_ff155d63', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03052.RNA-Seq.R1_L007.T C3N-03052 LUAD RNA-Seq tumor CPT0236000019 190702_UNC32-K00270_0188_BH7CLJBBXY_GCACGGAC-GTCTCGCA_S25_L007_R1_001.fastq.gz 4687840121 FASTQ R1_L007 unaligned CPTAC3 dc08e710-d5b1-44c2-8fdd-8db211a15026 759a0024f9818c101c17860a3bade904 { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor' } -C3N-03052.RNA-Seq.R2_L003.A C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 190702_UNC32-K00270_0187_AH7FK2BBXY_GGCTTAAG-TCGTGACC_S12_L003_R2_001.fastq.gz 4696624568 FASTQ R2_L003 unaligned CPTAC3 499b8af3-d4ce-4213-8d22-cf84b3a603c6 3830e01d04ac5f03e12519d60e636152 { 'aliquot_tag': 'ALQ_ff155d63', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03052.RNA-Seq.R2_L007.T C3N-03052 LUAD RNA-Seq tumor CPT0236000019 190702_UNC32-K00270_0188_BH7CLJBBXY_GCACGGAC-GTCTCGCA_S25_L007_R2_001.fastq.gz 5478049770 FASTQ R2_L007 unaligned CPTAC3 4375ab09-d71c-478a-bbd8-dea4d7355087 8cab340194f5dca2b283daf82ad296ce { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor' } -C3N-03052.RNA-Seq.transcriptome.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 8eabf8d6-aea7-44e5-a1e0-964198d18760.rna_seq.transcriptome.gdc_realn.bam 9925108060 BAM transcriptome harmonized CPTAC3 4fe3cfed-0339-46c2-802a-4f171fa410fe ed4f30e650ac270fbdf902c1924915da { 'aliquot_tag': 'ALQ_ff155d63', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03052.RNA-Seq.transcriptome.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 9a6a4d20-2b71-41d0-9dc1-45616cd0a89a.rna_seq.transcriptome.gdc_realn.bam 10078362210 BAM transcriptome harmonized CPTAC3 2d52875b-e72f-4cbd-8bcb-c23443d004cd 070307c836b50954d233b12606461c00 { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor' } +C3N-03052.RNA-Seq.chimeric.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 64f996db-6e63-4603-83b5-2635c3c9349f.rna_seq.chimeric.gdc_realn.bam 38816293 BAM chimeric harmonized CPTAC3 b0334e94-b45c-4015-9d60-b95bc9914d13 b388f8597c5b16577a95785759f8d292 { 'aliquot_tag': 'ALQ_ff155d63', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03052.RNA-Seq.chimeric.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 89eefef6-0a4a-4902-baa8-d540cc72b4b5.rna_seq.chimeric.gdc_realn.bam 41299994 BAM chimeric harmonized CPTAC3 4bf3d2fd-eae3-4126-add0-108122bb1e5d 4e7ee1c6fcb0d910cd2cbab27a36033a { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor' } +C3N-03052.RNA-Seq.genomic.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 64f996db-6e63-4603-83b5-2635c3c9349f.rna_seq.genomic.gdc_realn.bam 8988046649 BAM genomic harmonized CPTAC3 043a56ee-d740-4d87-88cb-a7fa5e06d4a2 e32bd1c646232ad4d02fafa516c3dbc4 { 'aliquot_tag': 'ALQ_ff155d63', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03052.RNA-Seq.genomic.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 89eefef6-0a4a-4902-baa8-d540cc72b4b5.rna_seq.genomic.gdc_realn.bam 10113450937 BAM genomic harmonized CPTAC3 d2e99242-7807-43e7-91b2-53874f08f1bd 5f920005fbd78c743783877e83132b76 { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor' } +C3N-03052.RNA-Seq.R1_L003.A C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 190702_UNC32-K00270_0187_AH7FK2BBXY_GGCTTAAG-TCGTGACC_S12_L003_R1_001.fastq.gz 4594305201 FASTQ R1_L003 unaligned CPTAC3 13e423e6-3ec8-4dec-8706-a3c5fbf34991 2009a572201b3ff14ace1ba9f245733f { 'aliquot_tag': 'ALQ_ff155d63', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03052.RNA-Seq.R1_L007.T C3N-03052 LUAD RNA-Seq tumor CPT0236000019 190702_UNC32-K00270_0188_BH7CLJBBXY_GCACGGAC-GTCTCGCA_S25_L007_R1_001.fastq.gz 4687840121 FASTQ R1_L007 unaligned CPTAC3 dc08e710-d5b1-44c2-8fdd-8db211a15026 759a0024f9818c101c17860a3bade904 { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03052.RNA-Seq.R2_L003.A C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 190702_UNC32-K00270_0187_AH7FK2BBXY_GGCTTAAG-TCGTGACC_S12_L003_R2_001.fastq.gz 4696624568 FASTQ R2_L003 unaligned CPTAC3 499b8af3-d4ce-4213-8d22-cf84b3a603c6 3830e01d04ac5f03e12519d60e636152 { 'aliquot_tag': 'ALQ_ff155d63', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03052.RNA-Seq.R2_L007.T C3N-03052 LUAD RNA-Seq tumor CPT0236000019 190702_UNC32-K00270_0188_BH7CLJBBXY_GCACGGAC-GTCTCGCA_S25_L007_R2_001.fastq.gz 5478049770 FASTQ R2_L007 unaligned CPTAC3 4375ab09-d71c-478a-bbd8-dea4d7355087 8cab340194f5dca2b283daf82ad296ce { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03052.RNA-Seq.transcriptome.A.hg38 C3N-03052 LUAD RNA-Seq tissue_normal CPT0236010010 64f996db-6e63-4603-83b5-2635c3c9349f.rna_seq.transcriptome.gdc_realn.bam 11229824504 BAM transcriptome harmonized CPTAC3 b79831af-8d02-41ad-a32b-0ee041947d57 e099c56048cc2687c921ed3085081705 { 'aliquot_tag': 'ALQ_ff155d63', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03052.RNA-Seq.transcriptome.T.hg38 C3N-03052 LUAD RNA-Seq tumor CPT0236000019 89eefef6-0a4a-4902-baa8-d540cc72b4b5.rna_seq.transcriptome.gdc_realn.bam 11361956841 BAM transcriptome harmonized CPTAC3 ab2d2cd7-e890-45aa-98b3-11bdf0b21796 4b707566d5da6d1876d62fb9b5b2f704 { 'aliquot_tag': 'ALQ_bba9cc77', 'gdc_sample_type': 'Primary Tumor' } C3N-03052.WGS.N C3N-03052 LUAD WGS blood_normal CPT0236050002 CPT0236050002.WholeGenome.RP-1303.bam 62386096801 BAM aligned CPTAC3 cb2277bd-3152-4c96-8481-4882be6b8f7e 74d02b0d9326e8305933b2e9c712fcfb { 'aliquot_tag': 'ALQ_fd80abce', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03052.WGS.N.hg38 C3N-03052 LUAD WGS blood_normal CPT0236050002 1339bb46-f48f-4076-9d91-6fe4d07a4829_wgs_gdc_realn.bam 89532965838 BAM harmonized CPTAC3 4af30506-02d5-4cb4-8d62-41bd655953dd 6daa89f32b071ec0693b6e37096ec212 { 'aliquot_tag': 'ALQ_fd80abce', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03052.WGS.T C3N-03052 LUAD WGS tumor CPT0236000012 CPT0236000012.WholeGenome.RP-1303.bam 63935047075 BAM aligned CPTAC3 9dccc65f-6ad3-4ac4-9825-8f74599e13ae 18013f3e01b021ff0d269109d003a7b1 { 'aliquot_tag': 'ALQ_2c7b15ff', 'gdc_sample_type': 'Primary Tumor' } @@ -34317,16 +36607,16 @@ C3N-03054.miRNA-Seq.A C3N-03054 LUAD miRNA-Seq tissue_normal CPT0236080009 19072 C3N-03054.miRNA-Seq.A.hg38 C3N-03054 LUAD miRNA-Seq tissue_normal CPT0236080009 ead04a07-ea49-4cc4-84e8-245109115a40_mirnaseq_gdc_realn.bam 244081600 BAM harmonized CPTAC3 e26f9000-7dfd-4363-a1b1-d24d836a166c 9db9e36496d2e90a4de231e6e3db24d5 { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03054.miRNA-Seq.T C3N-03054 LUAD miRNA-Seq tumor CPT0236060009 190722_UNC31-K00269_0234_AH7VGTBBXY_CAGATC_S3_L007_R1_001.unaln.bam 218856075 BAM unaligned CPTAC3 5d79d89e-10e7-4f9f-a06f-0350a0ee82cf 36f6f7af010ed008b51174224ef83569 { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor' } C3N-03054.miRNA-Seq.T.hg38 C3N-03054 LUAD miRNA-Seq tumor CPT0236060009 8f375b5f-fc4c-4322-baed-c95e4c6403f8_mirnaseq_gdc_realn.bam 250436803 BAM harmonized CPTAC3 c5932700-6a8b-4e3f-99cc-98564dd0eed5 9944defa65d31833cb4ee58423b02adc { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor' } -C3N-03054.RNA-Seq.chimeric.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 697cfeb5-e074-4426-addd-d18ebb645024.rna_seq.chimeric.gdc_realn.bam 24780253 BAM chimeric harmonized CPTAC3 9c5b3172-9849-4222-a43e-d1908b189b1b 51f1b8ef4565449e7d7998d29c99432a { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03054.RNA-Seq.chimeric.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 5fa5365c-575f-40c5-8d24-608c58ed4f59.rna_seq.chimeric.gdc_realn.bam 37616691 BAM chimeric harmonized CPTAC3 f74f94b7-1447-4195-911d-8d004d30d6a8 6a2f63ede000f94271d2937e9777b2f1 { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor' } -C3N-03054.RNA-Seq.genomic.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 697cfeb5-e074-4426-addd-d18ebb645024.rna_seq.genomic.gdc_realn.bam 9283605939 BAM genomic harmonized CPTAC3 d0f3dfda-9159-41bd-a9fa-a9cd584e43ff d8ea183cd8f965fbd1f74bc30eb565b1 { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03054.RNA-Seq.genomic.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 5fa5365c-575f-40c5-8d24-608c58ed4f59.rna_seq.genomic.gdc_realn.bam 8563386822 BAM genomic harmonized CPTAC3 5359773e-cd62-490f-bdc8-bfdb147498f1 a77bd7bb12891cb69cdc7778af7c1254 { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor' } -C3N-03054.RNA-Seq.R1_L002.T C3N-03054 LUAD RNA-Seq tumor CPT0236060009 190612_UNC31-K00269_0223_BH77CWBBXY_AGGCAGAG-AGAATGCC_S5_L002_R1_001.fastq.gz 3824680817 FASTQ R1_L002 unaligned CPTAC3 13f9b89d-4863-4dae-9128-62d14a2411bf b8578cef465f55bb162ddb92c2704ce2 { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor' } -C3N-03054.RNA-Seq.R1_L005.A C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 190607_UNC32-K00270_0178_AH773TBBXY_TGCGAGAC-CATTGTTG_S17_L005_R1_001.fastq.gz 3652802470 FASTQ R1_L005 unaligned CPTAC3 e410c5c9-bd71-433e-a4a4-be0067125c38 b44bfa73d8d3134f4f12ac7df3b9b612 { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03054.RNA-Seq.R2_L002.T C3N-03054 LUAD RNA-Seq tumor CPT0236060009 190612_UNC31-K00269_0223_BH77CWBBXY_AGGCAGAG-AGAATGCC_S5_L002_R2_001.fastq.gz 4347757368 FASTQ R2_L002 unaligned CPTAC3 6c788677-7c36-4449-9689-7fda08e3cdb9 769e9d002cda8f53e5fee09cc8719f6d { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor' } -C3N-03054.RNA-Seq.R2_L005.A C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 190607_UNC32-K00270_0178_AH773TBBXY_TGCGAGAC-CATTGTTG_S17_L005_R2_001.fastq.gz 4053884389 FASTQ R2_L005 unaligned CPTAC3 6a9cea43-16ec-4a2c-a0f6-d6164247b8db 0974de0d1b8229a11e156516e65b6042 { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03054.RNA-Seq.transcriptome.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 697cfeb5-e074-4426-addd-d18ebb645024.rna_seq.transcriptome.gdc_realn.bam 6644617276 BAM transcriptome harmonized CPTAC3 f2f6f065-ce31-4691-8e77-9726c95b7c7a 474542f76bfe7f71ed49676cce30de9f { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03054.RNA-Seq.transcriptome.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 5fa5365c-575f-40c5-8d24-608c58ed4f59.rna_seq.transcriptome.gdc_realn.bam 8338939932 BAM transcriptome harmonized CPTAC3 2a5d17c3-a58b-4184-ab1b-7ebc97034d99 c01658a7f3f9f26ca0e8fc70729da4bc { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor' } +C3N-03054.RNA-Seq.chimeric.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 98bbabd1-f5ff-4619-aece-3aefcedbffb3.rna_seq.chimeric.gdc_realn.bam 24764477 BAM chimeric harmonized CPTAC3 b0b0b8aa-5817-4215-b667-8d085160b5ce be6c097cc3a6ca1ef04fed823c9d2822 { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03054.RNA-Seq.chimeric.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 45cf5e08-ba9a-4ee7-b00c-b531ab7b4f28.rna_seq.chimeric.gdc_realn.bam 37632979 BAM chimeric harmonized CPTAC3 bfc8546a-44f7-4173-8a30-17a819322974 7ea096193ff3fc9f8c1d3027d2781495 { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor' } +C3N-03054.RNA-Seq.genomic.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 98bbabd1-f5ff-4619-aece-3aefcedbffb3.rna_seq.genomic.gdc_realn.bam 9284619401 BAM genomic harmonized CPTAC3 cb5ddba0-abf7-4a03-a36c-c92de1e969b8 f973442f28147d12d7a1c6d45e80f50e { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03054.RNA-Seq.genomic.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 45cf5e08-ba9a-4ee7-b00c-b531ab7b4f28.rna_seq.genomic.gdc_realn.bam 8564235339 BAM genomic harmonized CPTAC3 090cfaf4-7fa3-4224-b5dc-e66770a22542 98b131b14b35dbb72a783ef3c8c93493 { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor' } +C3N-03054.RNA-Seq.R1_L002.T C3N-03054 LUAD RNA-Seq tumor CPT0236060009 190612_UNC31-K00269_0223_BH77CWBBXY_AGGCAGAG-AGAATGCC_S5_L002_R1_001.fastq.gz 3824680817 FASTQ R1_L002 unaligned CPTAC3 13f9b89d-4863-4dae-9128-62d14a2411bf b8578cef465f55bb162ddb92c2704ce2 { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03054.RNA-Seq.R1_L005.A C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 190607_UNC32-K00270_0178_AH773TBBXY_TGCGAGAC-CATTGTTG_S17_L005_R1_001.fastq.gz 3652802470 FASTQ R1_L005 unaligned CPTAC3 e410c5c9-bd71-433e-a4a4-be0067125c38 b44bfa73d8d3134f4f12ac7df3b9b612 { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03054.RNA-Seq.R2_L002.T C3N-03054 LUAD RNA-Seq tumor CPT0236060009 190612_UNC31-K00269_0223_BH77CWBBXY_AGGCAGAG-AGAATGCC_S5_L002_R2_001.fastq.gz 4347757368 FASTQ R2_L002 unaligned CPTAC3 6c788677-7c36-4449-9689-7fda08e3cdb9 769e9d002cda8f53e5fee09cc8719f6d { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03054.RNA-Seq.R2_L005.A C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 190607_UNC32-K00270_0178_AH773TBBXY_TGCGAGAC-CATTGTTG_S17_L005_R2_001.fastq.gz 4053884389 FASTQ R2_L005 unaligned CPTAC3 6a9cea43-16ec-4a2c-a0f6-d6164247b8db 0974de0d1b8229a11e156516e65b6042 { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03054.RNA-Seq.transcriptome.A.hg38 C3N-03054 LUAD RNA-Seq tissue_normal CPT0236080009 98bbabd1-f5ff-4619-aece-3aefcedbffb3.rna_seq.transcriptome.gdc_realn.bam 7455769052 BAM transcriptome harmonized CPTAC3 06f0e212-753b-4411-93ae-65aae197ff44 8edfefae6639ac0d364bc24e7fb7e148 { 'aliquot_tag': 'ALQ_92c2b6f7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03054.RNA-Seq.transcriptome.T.hg38 C3N-03054 LUAD RNA-Seq tumor CPT0236060009 45cf5e08-ba9a-4ee7-b00c-b531ab7b4f28.rna_seq.transcriptome.gdc_realn.bam 9317981648 BAM transcriptome harmonized CPTAC3 197d0eb9-2fa5-4564-8abb-8a7b68335b8e 67f5a1009d8e1ae7a407e85722fac776 { 'aliquot_tag': 'ALQ_2df20896', 'gdc_sample_type': 'Primary Tumor' } C3N-03054.WGS.N C3N-03054 LUAD WGS blood_normal CPT0236120002 CPT0236120002.WholeGenome.RP-1303.bam 56226202704 BAM aligned CPTAC3 c09b3a32-2fd6-4014-80ea-8cac321c5d47 3d55bfba47c6941b39b8e000e71e4892 { 'aliquot_tag': 'ALQ_84fca47b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03054.WGS.N.hg38 C3N-03054 LUAD WGS blood_normal CPT0236120002 4d74aa49-29f0-4033-a036-95b2fef1a5eb_wgs_gdc_realn.bam 81749702103 BAM harmonized CPTAC3 2dfedb7e-a823-4d30-abde-ad168228f0a5 818ee43342dae5cee5f04f36e8156846 { 'aliquot_tag': 'ALQ_84fca47b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03054.WGS.T C3N-03054 LUAD WGS tumor CPT0236060006 CPT0236060006.WholeGenome.RP-1303.bam 76543221622 BAM aligned CPTAC3 2f90603d-0069-4e52-b033-cdaeb34e6db6 0a35dd6ad0e420a6b8f930852e5ad37e { 'aliquot_tag': 'ALQ_bd4d1507', 'gdc_sample_type': 'Primary Tumor' } @@ -34341,11 +36631,11 @@ C3N-03057.MethArray.Green.T C3N-03057 LUAD Methylation Array tumor CPT0236210006 C3N-03057.MethArray.Red.T C3N-03057 LUAD Methylation Array tumor CPT0236210006 203561620086_R03C01_Red.idat 13676236 IDAT Red NA CPTAC3 732013b8-8d19-4385-b6fc-60c4f81911b5 cc216f61bc30f459e7ba3f1e1c90896d { 'aliquot_tag': 'ALQ_42a5681c', 'gdc_sample_type': 'Primary Tumor' } C3N-03057.miRNA-Seq.T C3N-03057 LUAD miRNA-Seq tumor CPT0236210009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACTTGA_S4_L007_R1_001.unaln.bam 189491000 BAM unaligned CPTAC3 5b73ff17-7b20-40e8-b56d-2bcefe5de810 362e1dde63774b5d603064d6fd1563c0 { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor' } C3N-03057.miRNA-Seq.T.hg38 C3N-03057 LUAD miRNA-Seq tumor CPT0236210009 3dca75b2-5007-48fb-bf31-c8bdd6bd66f1_mirnaseq_gdc_realn.bam 210955119 BAM harmonized CPTAC3 facadada-b03d-4d1a-8537-af5dece95301 b0212653ec891f9cfd8258a01f5782e0 { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03057.RNA-Seq.chimeric.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 dc19cf4e-af90-4ca6-95dc-3865bb2ad5ca.rna_seq.chimeric.gdc_realn.bam 47103118 BAM chimeric harmonized CPTAC3 dbb6e5b9-c5d2-4f75-913e-ab080f913e45 011a273cd51bc9787868755f2b60b69c { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03057.RNA-Seq.genomic.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 dc19cf4e-af90-4ca6-95dc-3865bb2ad5ca.rna_seq.genomic.gdc_realn.bam 8871822151 BAM genomic harmonized CPTAC3 2499b8d1-b679-4e46-a50e-bc1e2c3f29c3 e3252ebcd9760fd1e371c44a25b54d60 { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03057.RNA-Seq.R1_L002.T C3N-03057 LUAD RNA-Seq tumor CPT0236210009 190612_UNC31-K00269_0223_BH77CWBBXY_GAATGAGA-GAGGCATT_S6_L002_R1_001.fastq.gz 4117551387 FASTQ R1_L002 unaligned CPTAC3 62175043-4989-4b17-b924-984a6039dc5a fa09cb9528f4c5e681948bdbbd311029 { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03057.RNA-Seq.R2_L002.T C3N-03057 LUAD RNA-Seq tumor CPT0236210009 190612_UNC31-K00269_0223_BH77CWBBXY_GAATGAGA-GAGGCATT_S6_L002_R2_001.fastq.gz 4572043529 FASTQ R2_L002 unaligned CPTAC3 167417a5-fae3-4559-93f0-b79a71b966ed 9d04185d9a9598d0b709a7fe4b85b4ad { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03057.RNA-Seq.transcriptome.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 dc19cf4e-af90-4ca6-95dc-3865bb2ad5ca.rna_seq.transcriptome.gdc_realn.bam 7967005592 BAM transcriptome harmonized CPTAC3 fbca37c1-514d-4916-a453-f7c2463cf7ef 62e9c7102c0ffbd43e53e6a7a6f46490 { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03057.RNA-Seq.chimeric.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 83e461c5-1e19-4ff9-a9be-00a8e322cf98.rna_seq.chimeric.gdc_realn.bam 47103982 BAM chimeric harmonized CPTAC3 eed70960-f0d4-4dcb-8e7e-987a62fb99bb 14f16acf463bae8973110dc902add05e { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03057.RNA-Seq.genomic.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 83e461c5-1e19-4ff9-a9be-00a8e322cf98.rna_seq.genomic.gdc_realn.bam 8872915038 BAM genomic harmonized CPTAC3 4fe2c93b-fc93-4020-8b95-960a5d372ff2 357f29be6286024c531e27f4824937a6 { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03057.RNA-Seq.R1_L002.T C3N-03057 LUAD RNA-Seq tumor CPT0236210009 190612_UNC31-K00269_0223_BH77CWBBXY_GAATGAGA-GAGGCATT_S6_L002_R1_001.fastq.gz 4117551387 FASTQ R1_L002 unaligned CPTAC3 62175043-4989-4b17-b924-984a6039dc5a fa09cb9528f4c5e681948bdbbd311029 { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03057.RNA-Seq.R2_L002.T C3N-03057 LUAD RNA-Seq tumor CPT0236210009 190612_UNC31-K00269_0223_BH77CWBBXY_GAATGAGA-GAGGCATT_S6_L002_R2_001.fastq.gz 4572043529 FASTQ R2_L002 unaligned CPTAC3 167417a5-fae3-4559-93f0-b79a71b966ed 9d04185d9a9598d0b709a7fe4b85b4ad { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03057.RNA-Seq.transcriptome.T.hg38 C3N-03057 LUAD RNA-Seq tumor CPT0236210009 83e461c5-1e19-4ff9-a9be-00a8e322cf98.rna_seq.transcriptome.gdc_realn.bam 9041238320 BAM transcriptome harmonized CPTAC3 bf796fb3-25c6-44ec-b0af-d38e617b964f 967ebdc0bdc6a35ffdf04bf7d380f745 { 'aliquot_tag': 'ALQ_d21a758d', 'gdc_sample_type': 'Primary Tumor' } C3N-03057.WGS.N C3N-03057 LUAD WGS blood_normal CPT0236260002 CPT0236260002.WholeGenome.RP-1303.bam 95013890438 BAM aligned CPTAC3 c1bc7ccb-2389-4a58-ac3b-801ee5d9194d 01ca684b9a83ad939cb5f188b736988f { 'aliquot_tag': 'ALQ_f7e87015', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03057.WGS.N.hg38 C3N-03057 LUAD WGS blood_normal CPT0236260002 dbc78993-2b74-482d-88be-8085ea35fee9_wgs_gdc_realn.bam 139535062846 BAM harmonized CPTAC3 5f6401d7-dd48-4d0b-9e30-47566d382272 9c54425c8e698984b7aeb1ef75db7dbb { 'aliquot_tag': 'ALQ_f7e87015', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03057.WGS.T C3N-03057 LUAD WGS tumor CPT0236210006 CPT0236210006.WholeGenome.RP-1303.bam 65345440613 BAM aligned CPTAC3 7cba86f7-1983-47e7-a449-9d985527fcec 8d1e44762631a08fdcec43264a42e073 { 'aliquot_tag': 'ALQ_42a5681c', 'gdc_sample_type': 'Primary Tumor' } @@ -34359,9 +36649,9 @@ C3N-03061.MethArray.Red.T C3N-03061 PDA Methylation Array tumor CPT0208840014 20 C3N-03061.miRNA-Seq.T C3N-03061 PDA miRNA-Seq tumor CPT0208840010 190813_UNC32-K00270_0196_AH5MCWBBXY_CACCGG_S15_L003_R1_001.unaln.bam 265404178 BAM unaligned CPTAC3 5834b137-aefe-4645-a0e8-8fbf192b428b fcefe28a4d1e8b41cf38945417f6fe98 { 'aliquot_tag': 'ALQ_5162cc0', 'gdc_sample_type': 'Primary Tumor' } C3N-03061.miRNA-Seq.T.hg38 C3N-03061 PDA miRNA-Seq tumor CPT0208840010 3df01264-380e-438a-819b-776cc5352a71_mirnaseq_gdc_realn.bam 296386745 BAM harmonized CPTAC3 15730021-257b-4556-a6c9-571aea8709a2 65de5dd5bd08c57a958e8d1ce258cdc8 { 'aliquot_tag': 'ALQ_5162cc0', 'gdc_sample_type': 'Primary Tumor' } C3N-03061.RNA-Seq.chimeric.T.hg38 C3N-03061 PDA RNA-Seq tumor CPT0208840010 315a953e-2f0d-4676-ac65-d4868307604b.rna_seq.chimeric.gdc_realn.bam 37536249 BAM chimeric harmonized CPTAC3 7eed3106-9a4d-411d-9fbc-fb1bc219d15b 1c0d6c73f24c001a18cc61fe3035dc55 { 'aliquot_tag': 'ALQ_5162cc0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03061.RNA-Seq.genomic.T.hg38 C3N-03061 PDA RNA-Seq tumor CPT0208840010 315a953e-2f0d-4676-ac65-d4868307604b.rna_seq.genomic.gdc_realn.bam 8824851869 BAM genomic harmonized CPTAC3 db66a39e-240b-4e03-a077-0efb48e6b714 8c0188c1f4f1b245762691cfb08b5d5d { 'aliquot_tag': 'ALQ_5162cc0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03061.RNA-Seq.R1_L007.T C3N-03061 PDA RNA-Seq tumor CPT0208840010 190702_UNC32-K00270_0187_AH7FK2BBXY_ATGTAAGT-ACTCTATG_S21_L007_R1_001.fastq.gz 4295719121 FASTQ R1_L007 unaligned CPTAC3 5e04a667-9083-4d39-9933-57dab9a65fd0 991af89cc0d25240e22aa89de3f93905 { 'aliquot_tag': 'ALQ_5162cc0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03061.RNA-Seq.R2_L007.T C3N-03061 PDA RNA-Seq tumor CPT0208840010 190702_UNC32-K00270_0187_AH7FK2BBXY_ATGTAAGT-ACTCTATG_S21_L007_R2_001.fastq.gz 4700486391 FASTQ R2_L007 unaligned CPTAC3 aa4e1900-2a03-4fa4-a3ad-64e9640d8160 6ce35f0c32875fde940a0b3e0e068242 { 'aliquot_tag': 'ALQ_5162cc0', 'gdc_sample_type': 'Primary Tumor' } +C3N-03061.RNA-Seq.genomic.T.hg38 C3N-03061 PDA RNA-Seq tumor CPT0208840010 315a953e-2f0d-4676-ac65-d4868307604b.rna_seq.genomic.gdc_realn.bam 8824851869 BAM genomic harmonized CPTAC3 8f7f2473-6938-46f4-b2fc-71fc59512f5e 8c0188c1f4f1b245762691cfb08b5d5d { 'aliquot_tag': 'ALQ_5162cc0', 'gdc_sample_type': 'Primary Tumor' } +C3N-03061.RNA-Seq.R1_L007.T C3N-03061 PDA RNA-Seq tumor CPT0208840010 190702_UNC32-K00270_0187_AH7FK2BBXY_ATGTAAGT-ACTCTATG_S21_L007_R1_001.fastq.gz 4295719121 FASTQ R1_L007 unaligned CPTAC3 5e04a667-9083-4d39-9933-57dab9a65fd0 991af89cc0d25240e22aa89de3f93905 { 'aliquot_tag': 'ALQ_5162cc0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03061.RNA-Seq.R2_L007.T C3N-03061 PDA RNA-Seq tumor CPT0208840010 190702_UNC32-K00270_0187_AH7FK2BBXY_ATGTAAGT-ACTCTATG_S21_L007_R2_001.fastq.gz 4700486391 FASTQ R2_L007 unaligned CPTAC3 aa4e1900-2a03-4fa4-a3ad-64e9640d8160 6ce35f0c32875fde940a0b3e0e068242 { 'aliquot_tag': 'ALQ_5162cc0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-03061.RNA-Seq.transcriptome.T.hg38 C3N-03061 PDA RNA-Seq tumor CPT0208840010 315a953e-2f0d-4676-ac65-d4868307604b.rna_seq.transcriptome.gdc_realn.bam 12109701943 BAM transcriptome harmonized CPTAC3 5ee84d2d-96a9-481d-afa0-f2ef6580ebc8 d00f71e1585bc1890ba47ad6824cefc0 { 'aliquot_tag': 'ALQ_5162cc0', 'gdc_sample_type': 'Primary Tumor' } C3N-03061.WGS.N C3N-03061 PDA WGS blood_normal CPT0208890002 CPT0208890002.WholeGenome.RP-1303.bam 62473669927 BAM aligned CPTAC3 254f9980-94a6-4943-b695-9cd3916dc1d3 64b72b2fa0dd71a2beb7ff3540ddceb9 { 'aliquot_tag': 'ALQ_a93b81c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03061.WGS.N.hg38 C3N-03061 PDA WGS blood_normal CPT0208890002 6998726a-ed10-46cb-b237-c8d6e332e5e7_wgs_gdc_realn.bam 89283803102 BAM harmonized CPTAC3 6534b876-1ab0-4dad-83c2-261af7341360 cc7fd8075f63ae589b0f02d3ba51d4c6 { 'aliquot_tag': 'ALQ_a93b81c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34379,16 +36669,16 @@ C3N-03063.miRNA-Seq.A C3N-03063 LUAD miRNA-Seq tissue_normal CPT0208920010 19082 C3N-03063.miRNA-Seq.A.hg38 C3N-03063 LUAD miRNA-Seq tissue_normal CPT0208920010 b6314644-a5b5-46fc-84cb-800d8dfcdfe9_mirnaseq_gdc_realn.bam 247863467 BAM harmonized CPTAC3 0562e8d9-ad83-4535-b1f7-3165d69781ca e3eb935d959ee6e9931d0a38c4151d70 { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03063.miRNA-Seq.T C3N-03063 LUAD miRNA-Seq tumor CPT0208910010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCATTC_S21_L006_R1_001.unaln.bam 147526955 BAM unaligned CPTAC3 d2ce06f2-6809-456a-aa76-1901cf4abd6a 177419d35e7833968df92d49c2a5c5f9 { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor' } C3N-03063.miRNA-Seq.T.hg38 C3N-03063 LUAD miRNA-Seq tumor CPT0208910010 2e7cb65b-db54-47b6-8ee3-ec100030a81b_mirnaseq_gdc_realn.bam 163917559 BAM harmonized CPTAC3 6312e993-1688-415c-a868-9a3e20b45f70 d0e4cf38f17b7a925e5226e5d3172baa { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor' } -C3N-03063.RNA-Seq.chimeric.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 9ffb7d82-4284-426c-b201-c97baaf04a6f.rna_seq.chimeric.gdc_realn.bam 68867943 BAM chimeric harmonized CPTAC3 e28f2b95-2f6e-4062-963f-56c98341016e d1d2051ea0994622c21b0c54fa8f2185 { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03063.RNA-Seq.chimeric.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 403cc3d1-ca7d-480c-914b-596c4772b390.rna_seq.chimeric.gdc_realn.bam 167792790 BAM chimeric harmonized CPTAC3 7f5c4ff7-ccf6-49fe-b54f-37347669161d acbe03751120434f44711a28b43fecd8 { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor' } -C3N-03063.RNA-Seq.genomic.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 9ffb7d82-4284-426c-b201-c97baaf04a6f.rna_seq.genomic.gdc_realn.bam 11148213748 BAM genomic harmonized CPTAC3 0ca841fd-87ea-4142-80a9-002d96113119 eaae609563a2ed1aeea5f852f828a4e1 { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03063.RNA-Seq.genomic.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 403cc3d1-ca7d-480c-914b-596c4772b390.rna_seq.genomic.gdc_realn.bam 10133110624 BAM genomic harmonized CPTAC3 bde59eed-9af5-4c1b-82bd-dd73f6f4061e c93439bdfc78abd32cb75eebeaeec7f3 { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor' } -C3N-03063.RNA-Seq.R1_L002.T C3N-03063 LUAD RNA-Seq tumor CPT0208910010 190614_UNC32-K00270_0182_BH7777BBXY_ATGGCATG-AAGGTACC_S6_L002_R1_001.fastq.gz 4109342753 FASTQ R1_L002 unaligned CPTAC3 6679fa70-dcae-4a8a-aec2-8bcf61fade91 302be9adbe9a6d1a7f7b1743be9c5b24 { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor' } -C3N-03063.RNA-Seq.R1_L007.A C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 190614_UNC32-K00270_0182_BH7777BBXY_ATGAGGCC-GTTAATTG_S25_L007_R1_001.fastq.gz 4806652605 FASTQ R1_L007 unaligned CPTAC3 b34eac8c-0f66-4a29-adaa-93b00a34356f 0290129186317ce5ca3320d18640bfb1 { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03063.RNA-Seq.R2_L002.T C3N-03063 LUAD RNA-Seq tumor CPT0208910010 190614_UNC32-K00270_0182_BH7777BBXY_ATGGCATG-AAGGTACC_S6_L002_R2_001.fastq.gz 4602913912 FASTQ R2_L002 unaligned CPTAC3 21ed5b07-a68c-4208-86c3-1ccc03374349 fd239be26851bea0717dfeb51ccfac2c { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor' } -C3N-03063.RNA-Seq.R2_L007.A C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 190614_UNC32-K00270_0182_BH7777BBXY_ATGAGGCC-GTTAATTG_S25_L007_R2_001.fastq.gz 5341927050 FASTQ R2_L007 unaligned CPTAC3 fa0a60df-c8c2-4710-8d1e-1434c60d0512 c7525919064ffce6e74416058040d1ee { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03063.RNA-Seq.transcriptome.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 9ffb7d82-4284-426c-b201-c97baaf04a6f.rna_seq.transcriptome.gdc_realn.bam 10377743768 BAM transcriptome harmonized CPTAC3 5beee796-28a7-44fb-a0dd-fab99d456a36 adf7eef9a3ce9f5729a88dc521f0065f { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03063.RNA-Seq.transcriptome.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 403cc3d1-ca7d-480c-914b-596c4772b390.rna_seq.transcriptome.gdc_realn.bam 9752700890 BAM transcriptome harmonized CPTAC3 507d0b69-bbf4-4b50-8bef-812f1b598a79 24abac61d42d3b5e24dfc1a3b0c3f498 { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor' } +C3N-03063.RNA-Seq.chimeric.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 eda9eff4-53cc-4605-9443-c9cbccfc0efb.rna_seq.chimeric.gdc_realn.bam 68857941 BAM chimeric harmonized CPTAC3 7a014b6b-9b76-401a-a6f2-b829a0e8535e 13d2d6855fb7e904116a92f99e18ade0 { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03063.RNA-Seq.chimeric.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 7c4b77b4-56b8-4b17-8670-0e0915e18ebf.rna_seq.chimeric.gdc_realn.bam 167767332 BAM chimeric harmonized CPTAC3 d479b632-bb3b-40ee-9f1d-a450c70a9ca9 a5d19eed0586ab44f090b678d0a566b6 { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor' } +C3N-03063.RNA-Seq.genomic.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 eda9eff4-53cc-4605-9443-c9cbccfc0efb.rna_seq.genomic.gdc_realn.bam 11149527663 BAM genomic harmonized CPTAC3 22249665-a46d-4106-9e42-c0cdf3585337 ab954792f634ed6ff88456e98a5fd2f3 { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03063.RNA-Seq.genomic.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 7c4b77b4-56b8-4b17-8670-0e0915e18ebf.rna_seq.genomic.gdc_realn.bam 10134629284 BAM genomic harmonized CPTAC3 4eebffe6-d390-446b-a0f6-0759e319e07a fc5e5d1ba7bf7078378bc7c4f2e4da5a { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor' } +C3N-03063.RNA-Seq.R1_L002.T C3N-03063 LUAD RNA-Seq tumor CPT0208910010 190614_UNC32-K00270_0182_BH7777BBXY_ATGGCATG-AAGGTACC_S6_L002_R1_001.fastq.gz 4109342753 FASTQ R1_L002 unaligned CPTAC3 6679fa70-dcae-4a8a-aec2-8bcf61fade91 302be9adbe9a6d1a7f7b1743be9c5b24 { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03063.RNA-Seq.R1_L007.A C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 190614_UNC32-K00270_0182_BH7777BBXY_ATGAGGCC-GTTAATTG_S25_L007_R1_001.fastq.gz 4806652605 FASTQ R1_L007 unaligned CPTAC3 b34eac8c-0f66-4a29-adaa-93b00a34356f 0290129186317ce5ca3320d18640bfb1 { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-03063.RNA-Seq.R2_L002.T C3N-03063 LUAD RNA-Seq tumor CPT0208910010 190614_UNC32-K00270_0182_BH7777BBXY_ATGGCATG-AAGGTACC_S6_L002_R2_001.fastq.gz 4602913912 FASTQ R2_L002 unaligned CPTAC3 21ed5b07-a68c-4208-86c3-1ccc03374349 fd239be26851bea0717dfeb51ccfac2c { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03063.RNA-Seq.R2_L007.A C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 190614_UNC32-K00270_0182_BH7777BBXY_ATGAGGCC-GTTAATTG_S25_L007_R2_001.fastq.gz 5341927050 FASTQ R2_L007 unaligned CPTAC3 fa0a60df-c8c2-4710-8d1e-1434c60d0512 c7525919064ffce6e74416058040d1ee { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } +C3N-03063.RNA-Seq.transcriptome.A.hg38 C3N-03063 LUAD RNA-Seq tissue_normal CPT0208920010 eda9eff4-53cc-4605-9443-c9cbccfc0efb.rna_seq.transcriptome.gdc_realn.bam 11755174981 BAM transcriptome harmonized CPTAC3 aa40d1c3-a95b-4ee8-b7a5-a01678b90cc3 fb6118c6cd1f9f2a28e653ca19b1bb94 { 'aliquot_tag': 'ALQ_410a0ac5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03063.RNA-Seq.transcriptome.T.hg38 C3N-03063 LUAD RNA-Seq tumor CPT0208910010 7c4b77b4-56b8-4b17-8670-0e0915e18ebf.rna_seq.transcriptome.gdc_realn.bam 11093088150 BAM transcriptome harmonized CPTAC3 baabf1a6-2661-4ae7-b99b-5e917be63da6 7e2f5a42bb5c44d827bb1b4e21f93b1c { 'aliquot_tag': 'ALQ_6aa7015', 'gdc_sample_type': 'Primary Tumor' } C3N-03063.WGS.N C3N-03063 LUAD WGS blood_normal CPT0208960002 CPT0208960002.WholeGenome.RP-1303.bam 65764363394 BAM aligned CPTAC3 bc694793-1d0b-4772-b8d7-c43fadd1e843 c0a0a89c0b1e9653400b96187f09e669 { 'aliquot_tag': 'ALQ_439ffc68', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03063.WGS.N.hg38 C3N-03063 LUAD WGS blood_normal CPT0208960002 e875c90b-d033-49a9-9159-6e539fa1d1c8_wgs_gdc_realn.bam 97163534453 BAM harmonized CPTAC3 d0dd4cfa-981e-4a0f-a4bb-ecc7b7d0326e 096dd19a9d32193d09ae7bf4f82a5a1c { 'aliquot_tag': 'ALQ_439ffc68', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03063.WGS.T C3N-03063 LUAD WGS tumor CPT0208910007 CPT0208910007.WholeGenome.RP-1303.bam 75325203299 BAM aligned CPTAC3 51153f88-f123-49ad-b797-429dcc767ff6 e2a399c39a5dbe8df2787d66f2efcd68 { 'aliquot_tag': 'ALQ_81d5d4f7', 'gdc_sample_type': 'Primary Tumor' } @@ -34407,12 +36697,12 @@ C3N-03069.miRNA-Seq.T C3N-03069 PDA miRNA-Seq tumor CPT0236340010 190712_UNC32-K C3N-03069.miRNA-Seq.T.hg38 C3N-03069 PDA miRNA-Seq tumor CPT0236340010 79cfcd8f-1f31-4e76-a801-3d13c9b4b4ed_mirnaseq_gdc_realn.bam 221535698 BAM harmonized CPTAC3 faa62ea7-b86c-4fea-8612-653486806a1e 1e0b66d6a2a5295174269b4d66e63a3e { 'aliquot_tag': 'ALQ_b161a0bd', 'gdc_sample_type': 'Primary Tumor' } C3N-03069.RNA-Seq.chimeric.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 805c05cf-3170-45cf-9cc1-7672cd281e01.rna_seq.chimeric.gdc_realn.bam 26334876 BAM chimeric harmonized CPTAC3 d99bdd41-88da-418f-bc7f-b5457ee24e03 de032e7a6c18a4539156a2f82d377b39 { 'aliquot_tag': 'ALQ_cba1f3dd', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03069.RNA-Seq.chimeric.T.hg38 C3N-03069 PDA RNA-Seq tumor CPT0236340010 7bf349b8-18c7-4880-8357-a49ab1e8fcc9.rna_seq.chimeric.gdc_realn.bam 27898218 BAM chimeric harmonized CPTAC3 75125184-1958-4b37-9617-3d98b696718b aefb6fc80654422dea20141609ef72a3 { 'aliquot_tag': 'ALQ_b161a0bd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03069.RNA-Seq.genomic.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 805c05cf-3170-45cf-9cc1-7672cd281e01.rna_seq.genomic.gdc_realn.bam 8410414316 BAM genomic harmonized CPTAC3 aaed942f-9eea-4f69-b757-d4a40dcc4f6b 3779f4f4155e3195e2c7612e1bdddb0a { 'aliquot_tag': 'ALQ_cba1f3dd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03069.RNA-Seq.genomic.T.hg38 C3N-03069 PDA RNA-Seq tumor CPT0236340010 7bf349b8-18c7-4880-8357-a49ab1e8fcc9.rna_seq.genomic.gdc_realn.bam 7172746382 BAM genomic harmonized CPTAC3 05cbf547-14e6-44f6-9df3-98f25b50c8b7 1140d705749eb340de292394c0f01dad { 'aliquot_tag': 'ALQ_b161a0bd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03069.RNA-Seq.R1_L006.A C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTTGGTAT-CCAAGTCC_S24_L006_R1_001.fastq.gz 3605633432 FASTQ R1_L006 unaligned CPTAC3 e8194392-ef54-460f-8e23-380d7510dba5 5479de698484af899645faf31186a474 { 'aliquot_tag': 'ALQ_cba1f3dd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03069.RNA-Seq.R1_L006.T C3N-03069 PDA RNA-Seq tumor CPT0236340010 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAGAGT-TGCCACCA_S25_L006_R1_001.fastq.gz 3608441806 FASTQ R1_L006 unaligned CPTAC3 96d96f8a-5cee-44ff-a47f-c9ea645e95c9 bcb398a0e8b7d87b0e29e6f9c0a119f8 { 'aliquot_tag': 'ALQ_b161a0bd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03069.RNA-Seq.R2_L006.A C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTTGGTAT-CCAAGTCC_S24_L006_R2_001.fastq.gz 4142580685 FASTQ R2_L006 unaligned CPTAC3 43e21637-48dd-473a-8f19-70708526f37d e33f09c824ea3a74ff254b83f1aa5f71 { 'aliquot_tag': 'ALQ_cba1f3dd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03069.RNA-Seq.R2_L006.T C3N-03069 PDA RNA-Seq tumor CPT0236340010 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAGAGT-TGCCACCA_S25_L006_R2_001.fastq.gz 3702202882 FASTQ R2_L006 unaligned CPTAC3 6d8a21ab-6059-4d0c-ad2e-db57b6574401 e61bb734c47112cf9e956e17a08b645f { 'aliquot_tag': 'ALQ_b161a0bd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03069.RNA-Seq.genomic.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 805c05cf-3170-45cf-9cc1-7672cd281e01.rna_seq.genomic.gdc_realn.bam 8410414316 BAM genomic harmonized CPTAC3 400a7f1b-ded3-42ca-ad20-1acca6f14fbd 3779f4f4155e3195e2c7612e1bdddb0a { 'aliquot_tag': 'ALQ_cba1f3dd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03069.RNA-Seq.genomic.T.hg38 C3N-03069 PDA RNA-Seq tumor CPT0236340010 7bf349b8-18c7-4880-8357-a49ab1e8fcc9.rna_seq.genomic.gdc_realn.bam 7172746382 BAM genomic harmonized CPTAC3 c7303887-8b9c-4a52-a77a-aba76f68cf25 1140d705749eb340de292394c0f01dad { 'aliquot_tag': 'ALQ_b161a0bd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03069.RNA-Seq.R1_L006.A C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTTGGTAT-CCAAGTCC_S24_L006_R1_001.fastq.gz 3605633432 FASTQ R1_L006 unaligned CPTAC3 e8194392-ef54-460f-8e23-380d7510dba5 5479de698484af899645faf31186a474 { 'aliquot_tag': 'ALQ_cba1f3dd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03069.RNA-Seq.R1_L006.T C3N-03069 PDA RNA-Seq tumor CPT0236340010 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAGAGT-TGCCACCA_S25_L006_R1_001.fastq.gz 3608441806 FASTQ R1_L006 unaligned CPTAC3 96d96f8a-5cee-44ff-a47f-c9ea645e95c9 bcb398a0e8b7d87b0e29e6f9c0a119f8 { 'aliquot_tag': 'ALQ_b161a0bd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03069.RNA-Seq.R2_L006.A C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 190702_UNC32-K00270_0188_BH7CLJBBXY_CTTGGTAT-CCAAGTCC_S24_L006_R2_001.fastq.gz 4142580685 FASTQ R2_L006 unaligned CPTAC3 43e21637-48dd-473a-8f19-70708526f37d e33f09c824ea3a74ff254b83f1aa5f71 { 'aliquot_tag': 'ALQ_cba1f3dd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-03069.RNA-Seq.R2_L006.T C3N-03069 PDA RNA-Seq tumor CPT0236340010 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAGAGT-TGCCACCA_S25_L006_R2_001.fastq.gz 3702202882 FASTQ R2_L006 unaligned CPTAC3 6d8a21ab-6059-4d0c-ad2e-db57b6574401 e61bb734c47112cf9e956e17a08b645f { 'aliquot_tag': 'ALQ_b161a0bd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-03069.RNA-Seq.transcriptome.A.hg38 C3N-03069 PDA RNA-Seq tissue_normal CPT0236360010 805c05cf-3170-45cf-9cc1-7672cd281e01.rna_seq.transcriptome.gdc_realn.bam 10611324381 BAM transcriptome harmonized CPTAC3 15a949d8-e07a-429c-9f1c-79a90779a68c 435181f15558ea6bffe188ee24040f36 { 'aliquot_tag': 'ALQ_cba1f3dd', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03069.RNA-Seq.transcriptome.T.hg38 C3N-03069 PDA RNA-Seq tumor CPT0236340010 7bf349b8-18c7-4880-8357-a49ab1e8fcc9.rna_seq.transcriptome.gdc_realn.bam 10932211854 BAM transcriptome harmonized CPTAC3 8e614409-fb33-46ed-a56c-0be5f0e63481 b44959cdf0c32bf6e77936e0a2c1daae { 'aliquot_tag': 'ALQ_b161a0bd', 'gdc_sample_type': 'Primary Tumor' } C3N-03069.WGS.N C3N-03069 PDA WGS blood_normal CPT0236400002 CPT0236400002.WholeGenome.RP-1303.bam 75260652979 BAM aligned CPTAC3 d4ecce44-d5a2-4c1d-960f-267b860c8765 3a0b448c960498f1a79655b26a777e92 { 'aliquot_tag': 'ALQ_aef166a8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34430,9 +36720,9 @@ C3N-03070.MethArray.Red.T C3N-03070 GBM Methylation Array tumor CPT0208980006 20 C3N-03070.miRNA-Seq.T C3N-03070 GBM miRNA-Seq tumor CPT0208980009 190228_UNC32-K00270_0151_AHYLY3BBXX_CATGGC_S34_L008_R1_001.unaln.bam 223702156 BAM unaligned CPTAC3 844fcaef-1192-4374-b269-79a0978dbf50 9f55f021acdcfad01f83df993cd5c27f { 'aliquot_tag': 'ALQ_6b7d9b81', 'gdc_sample_type': 'Primary Tumor' } C3N-03070.miRNA-Seq.T.hg38 C3N-03070 GBM miRNA-Seq tumor CPT0208980009 91cd5d29-e69b-4c71-9acd-3dd8cf7408c0_mirnaseq_gdc_realn.bam 258444867 BAM harmonized CPTAC3 7ff0dad7-4467-4755-8a51-e2ed5381225f 72dc97fb299d85011c235ba7af7f84ee { 'aliquot_tag': 'ALQ_6b7d9b81', 'gdc_sample_type': 'Primary Tumor' } C3N-03070.RNA-Seq.chimeric.T.hg38 C3N-03070 GBM RNA-Seq tumor CPT0208980009 a875d8c4-b0b2-485f-80e5-b05d27f7c405.rna_seq.chimeric.gdc_realn.bam 64797960 BAM chimeric harmonized CPTAC3 5aedc181-b02b-41bc-8058-b83205c22fb9 b4eb21945072436f3a2b59ddd164a319 { 'aliquot_tag': 'ALQ_6b7d9b81', 'gdc_sample_type': 'Primary Tumor' } -C3N-03070.RNA-Seq.genomic.T.hg38 C3N-03070 GBM RNA-Seq tumor CPT0208980009 a875d8c4-b0b2-485f-80e5-b05d27f7c405.rna_seq.genomic.gdc_realn.bam 9364809591 BAM genomic harmonized CPTAC3 2b15d893-14f9-4338-921f-dea4c601a3b8 492d022f360b7dc7c46a80f30d296bde { 'aliquot_tag': 'ALQ_6b7d9b81', 'gdc_sample_type': 'Primary Tumor' } -C3N-03070.RNA-Seq.R1_L004.T C3N-03070 GBM RNA-Seq tumor CPT0208980009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R1_001.fastq.gz 4511670372 FASTQ R1_L004 unaligned CPTAC3 66d938ca-8d17-45b9-834d-a289ed685049 e75d54b9f328dcb4bc9cbf02d2a33ccd { 'aliquot_tag': 'ALQ_6b7d9b81', 'gdc_sample_type': 'Primary Tumor' } -C3N-03070.RNA-Seq.R2_L004.T C3N-03070 GBM RNA-Seq tumor CPT0208980009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R2_001.fastq.gz 4305537656 FASTQ R2_L004 unaligned CPTAC3 6058cf7c-7895-4c9e-b6ca-3b7b0edfeaff b08b10490f6ae39798bd90b364984d19 { 'aliquot_tag': 'ALQ_6b7d9b81', 'gdc_sample_type': 'Primary Tumor' } +C3N-03070.RNA-Seq.genomic.T.hg38 C3N-03070 GBM RNA-Seq tumor CPT0208980009 a875d8c4-b0b2-485f-80e5-b05d27f7c405.rna_seq.genomic.gdc_realn.bam 9364809591 BAM genomic harmonized CPTAC3 ea7d19fc-959e-46ac-bbeb-dfd20afb1198 492d022f360b7dc7c46a80f30d296bde { 'aliquot_tag': 'ALQ_6b7d9b81', 'gdc_sample_type': 'Primary Tumor' } +C3N-03070.RNA-Seq.R1_L004.T C3N-03070 GBM RNA-Seq tumor CPT0208980009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R1_001.fastq.gz 4511670372 FASTQ R1_L004 unaligned CPTAC3 66d938ca-8d17-45b9-834d-a289ed685049 e75d54b9f328dcb4bc9cbf02d2a33ccd { 'aliquot_tag': 'ALQ_6b7d9b81', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03070.RNA-Seq.R2_L004.T C3N-03070 GBM RNA-Seq tumor CPT0208980009 190125_UNC31-K00269_0184_AH3M32BBXY_ATCACG_S10_L004_R2_001.fastq.gz 4305537656 FASTQ R2_L004 unaligned CPTAC3 6058cf7c-7895-4c9e-b6ca-3b7b0edfeaff b08b10490f6ae39798bd90b364984d19 { 'aliquot_tag': 'ALQ_6b7d9b81', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-03070.RNA-Seq.transcriptome.T.hg38 C3N-03070 GBM RNA-Seq tumor CPT0208980009 a875d8c4-b0b2-485f-80e5-b05d27f7c405.rna_seq.transcriptome.gdc_realn.bam 10809388036 BAM transcriptome harmonized CPTAC3 a8e1ba08-e261-4c50-b2af-fe057d352178 4212f020b0c5bfaf0767356072639f79 { 'aliquot_tag': 'ALQ_6b7d9b81', 'gdc_sample_type': 'Primary Tumor' } C3N-03070.WGS.N C3N-03070 GBM WGS blood_normal CPT0209010002 CPT0209010002.WholeGenome.RP-1303.bam 60352253574 BAM aligned CPTAC3 ec5a3f84-7596-43cf-9be4-b0b4908694c7 e72b51c6260da53fd27bbf963d25436c { 'aliquot_tag': 'ALQ_70c77a04', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03070.WGS.N.hg38 C3N-03070 GBM WGS blood_normal CPT0209010002 13ce4e2e-17f9-4cb4-bb07-afb6bf8e042d_wgs_gdc_realn.bam 87863624867 BAM harmonized CPTAC3 3b25f0f8-dc89-4946-ac13-cdde820a8595 91c2cf86e41a19383b0223561ec9558c { 'aliquot_tag': 'ALQ_70c77a04', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34447,9 +36737,9 @@ C3N-03072.MethArray.Red.T C3N-03072 LSCC Methylation Array tumor CPT0209020007 2 C3N-03072.miRNA-Seq.T C3N-03072 LSCC miRNA-Seq tumor CPT0209020010 190206_UNC31-K00269_0191_AH2WY5BBXY_ATCACG_S25_L002_R1_001.unaln.bam 143815935 BAM unaligned CPTAC3 8b0acf86-f94c-4910-b6e9-2534708ea9c5 da1429a3f68959d065c9cfed85988b76 { 'aliquot_tag': 'ALQ_c07250b9', 'gdc_sample_type': 'Primary Tumor' } C3N-03072.miRNA-Seq.T.hg38 C3N-03072 LSCC miRNA-Seq tumor CPT0209020010 b9d63ad5-3c70-412f-a3fa-d1b3296e76e9_mirnaseq_gdc_realn.bam 165437252 BAM harmonized CPTAC3 6187717e-e2cd-45b3-9957-252ecb61cd39 edf5be064252b9e7f6dccbd18f9fcbdc { 'aliquot_tag': 'ALQ_c07250b9', 'gdc_sample_type': 'Primary Tumor' } C3N-03072.RNA-Seq.chimeric.T.hg38 C3N-03072 LSCC RNA-Seq tumor CPT0209020010 a0a2b3a8-9e0f-422e-893a-8fb3ae2f0b6b.rna_seq.chimeric.gdc_realn.bam 89114912 BAM chimeric harmonized CPTAC3 84f45dda-e6cb-41e1-b7e6-432d43142806 41b3ba99e4cd48e1e7b25bc0559260cd { 'aliquot_tag': 'ALQ_c07250b9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03072.RNA-Seq.genomic.T.hg38 C3N-03072 LSCC RNA-Seq tumor CPT0209020010 a0a2b3a8-9e0f-422e-893a-8fb3ae2f0b6b.rna_seq.genomic.gdc_realn.bam 6422475185 BAM genomic harmonized CPTAC3 bdca77f6-3b64-48ba-95df-84b546ab2a20 a4aae70fb914814b01c4f36c15d6c43d { 'aliquot_tag': 'ALQ_c07250b9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03072.RNA-Seq.R1_L003.T C3N-03072 LSCC RNA-Seq tumor CPT0209020010 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L003_R1_001.fastq.gz 3100065422 FASTQ R1_L003 unaligned CPTAC3 64aababb-a390-4737-9537-19167b6cba6a 4f676388ac4440f043d5c8a6dbd60c73 { 'aliquot_tag': 'ALQ_c07250b9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03072.RNA-Seq.R2_L003.T C3N-03072 LSCC RNA-Seq tumor CPT0209020010 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L003_R2_001.fastq.gz 3084681041 FASTQ R2_L003 unaligned CPTAC3 3afce0c4-ac82-4f80-b237-1a5fd859f8d6 73f1b7e9731f6a676742ee5c24c29389 { 'aliquot_tag': 'ALQ_c07250b9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03072.RNA-Seq.genomic.T.hg38 C3N-03072 LSCC RNA-Seq tumor CPT0209020010 a0a2b3a8-9e0f-422e-893a-8fb3ae2f0b6b.rna_seq.genomic.gdc_realn.bam 6422475185 BAM genomic harmonized CPTAC3 15e14059-7090-4f66-b9e2-d8ca154aa3ec a4aae70fb914814b01c4f36c15d6c43d { 'aliquot_tag': 'ALQ_c07250b9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03072.RNA-Seq.R1_L003.T C3N-03072 LSCC RNA-Seq tumor CPT0209020010 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L003_R1_001.fastq.gz 3100065422 FASTQ R1_L003 unaligned CPTAC3 64aababb-a390-4737-9537-19167b6cba6a 4f676388ac4440f043d5c8a6dbd60c73 { 'aliquot_tag': 'ALQ_c07250b9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03072.RNA-Seq.R2_L003.T C3N-03072 LSCC RNA-Seq tumor CPT0209020010 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L003_R2_001.fastq.gz 3084681041 FASTQ R2_L003 unaligned CPTAC3 3afce0c4-ac82-4f80-b237-1a5fd859f8d6 73f1b7e9731f6a676742ee5c24c29389 { 'aliquot_tag': 'ALQ_c07250b9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-03072.RNA-Seq.transcriptome.T.hg38 C3N-03072 LSCC RNA-Seq tumor CPT0209020010 a0a2b3a8-9e0f-422e-893a-8fb3ae2f0b6b.rna_seq.transcriptome.gdc_realn.bam 7554135157 BAM transcriptome harmonized CPTAC3 9e31f1fe-e3fb-4668-a501-90af96c42df2 776055c9ed03d828e060399f765b5274 { 'aliquot_tag': 'ALQ_c07250b9', 'gdc_sample_type': 'Primary Tumor' } C3N-03072.WGS.N C3N-03072 LSCC WGS blood_normal CPT0209080002 CPT0209080002.WholeGenome.RP-1303.bam 104519418611 BAM aligned CPTAC3 150ba2e5-484c-4fd3-8667-d9c6bd66fd81 c1de09dd5637afa0df1203b6f9cad72e { 'aliquot_tag': 'ALQ_7dd71875', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03072.WGS.N.hg38 C3N-03072 LSCC WGS blood_normal CPT0209080002 d1fe7625-edef-4de3-8580-c5a1e327b334_wgs_gdc_realn.bam 151186957717 BAM harmonized CPTAC3 82aa30c0-3cbe-44f9-a5f3-48e3a5561b8f e04c43be840b2df4f2952321c92cdbf4 { 'aliquot_tag': 'ALQ_7dd71875', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34467,16 +36757,16 @@ C3N-03073.miRNA-Seq.A C3N-03073 LUAD miRNA-Seq tissue_normal CPT0209110009 19072 C3N-03073.miRNA-Seq.A.hg38 C3N-03073 LUAD miRNA-Seq tissue_normal CPT0209110009 ffbdabd5-324e-4056-a7f3-6431d450f9b9_mirnaseq_gdc_realn.bam 228036783 BAM harmonized CPTAC3 9ae2eda7-27ae-424f-bf0d-5eab2a473b1c 8ce946d9729702a60b0f94e54fe85112 { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03073.miRNA-Seq.T C3N-03073 LUAD miRNA-Seq tumor CPT0209100009 190722_UNC31-K00269_0234_AH7VGTBBXY_GATCAG_S5_L007_R1_001.unaln.bam 170217266 BAM unaligned CPTAC3 18b12ad5-0a48-44b0-968f-591fb185fdd2 8b1a42d611e97eda7ebc1f6a62ac43ed { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor' } C3N-03073.miRNA-Seq.T.hg38 C3N-03073 LUAD miRNA-Seq tumor CPT0209100009 e34f41ee-9783-4baf-8d2d-fc7805d96c18_mirnaseq_gdc_realn.bam 188336343 BAM harmonized CPTAC3 738af13e-57ad-4e5c-b246-ab70bdabd56d 5660f0d2176d918c04d894de78f028c0 { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor' } -C3N-03073.RNA-Seq.chimeric.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.chimeric.gdc_realn.bam 27902519 BAM chimeric harmonized CPTAC3 f2909109-8da9-46e8-a5f2-abadacd79050 5b3a80b9adca9956027b53b5d7722e0b { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03073.RNA-Seq.chimeric.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 6b33c662-14e5-4798-a1a3-3e0b35c2a67a.rna_seq.chimeric.gdc_realn.bam 33240074 BAM chimeric harmonized CPTAC3 6fc3067a-004b-4e8d-a635-7d6497202a4f 3652c36e1d412c01a10e3146e1e4470f { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor' } -C3N-03073.RNA-Seq.genomic.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.genomic.gdc_realn.bam 9932261725 BAM genomic harmonized CPTAC3 502ecb1d-0704-4c7c-8a43-745d6edde462 2e7a565793375f4fa3ba51a19df139a8 { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03073.RNA-Seq.genomic.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 6b33c662-14e5-4798-a1a3-3e0b35c2a67a.rna_seq.genomic.gdc_realn.bam 11466419583 BAM genomic harmonized CPTAC3 807a8856-820f-49c3-b544-c4e93ec0aca4 860aba33cdf05f915474aa94470c6508 { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor' } -C3N-03073.RNA-Seq.R1_L002.T C3N-03073 LUAD RNA-Seq tumor CPT0209100009 190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R1_001.fastq.gz 4110997799 FASTQ R1_L002 unaligned CPTAC3 9d4ad6ac-66af-4216-8aa2-40531e6b3c32 014ad50c2ad11b2e7c2efc343a053957 { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor' } -C3N-03073.RNA-Seq.R1_L005.A C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R1_001.fastq.gz 3911246975 FASTQ R1_L005 unaligned CPTAC3 b203accd-ac6f-4096-8b45-578c7365a462 d170a586b02bbee5b6f5024e1fa0f099 { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03073.RNA-Seq.R2_L002.T C3N-03073 LUAD RNA-Seq tumor CPT0209100009 190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R2_001.fastq.gz 4794736220 FASTQ R2_L002 unaligned CPTAC3 7a4ecbb4-b7db-4bef-8933-bcee1d84a4d0 c710d856664107b9375d7de6cfc793f5 { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor' } -C3N-03073.RNA-Seq.R2_L005.A C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R2_001.fastq.gz 4309621063 FASTQ R2_L005 unaligned CPTAC3 9af1321e-4672-466f-b1b3-8365ead84c06 67ca931174ca001eb9035638ef01e72f { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03073.RNA-Seq.transcriptome.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.transcriptome.gdc_realn.bam 7839735437 BAM transcriptome harmonized CPTAC3 c7e11f29-b5be-4b4d-a310-214ffdbc10bb 946909c7d79754b7154dc570a5a04bb1 { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03073.RNA-Seq.transcriptome.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 6b33c662-14e5-4798-a1a3-3e0b35c2a67a.rna_seq.transcriptome.gdc_realn.bam 8071449783 BAM transcriptome harmonized CPTAC3 808b91fa-48fc-4893-84bc-a45350ec1a85 9b6f48cce55b11e29d3acb625049841a { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor' } +C3N-03073.RNA-Seq.chimeric.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 46a4ba0d-0b16-4c58-839a-4a38eabc6657.rna_seq.chimeric.gdc_realn.bam 27899026 BAM chimeric harmonized CPTAC3 dc607152-916f-47a1-8b24-3ab84f5d68a9 541814f518a906c21b561d6e034022f2 { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03073.RNA-Seq.chimeric.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 78537d48-e056-476a-a4d1-fcf284189c46.rna_seq.chimeric.gdc_realn.bam 33236511 BAM chimeric harmonized CPTAC3 64d95282-ad18-45f6-843d-c94b0a3951d4 94ea88efc08f3f7f5ef483fc894c30a1 { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor' } +C3N-03073.RNA-Seq.genomic.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 46a4ba0d-0b16-4c58-839a-4a38eabc6657.rna_seq.genomic.gdc_realn.bam 9933597174 BAM genomic harmonized CPTAC3 007b4be0-dbf1-4bc9-99d3-eafb1a55024b d6b2ef939f30e77ec5bf8c6cd1afe581 { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03073.RNA-Seq.genomic.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 78537d48-e056-476a-a4d1-fcf284189c46.rna_seq.genomic.gdc_realn.bam 11466962894 BAM genomic harmonized CPTAC3 286b437a-a5f7-4a00-a748-12827962e427 ed7736f1c0dbb0d6f5614427f4433233 { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor' } +C3N-03073.RNA-Seq.R1_L002.T C3N-03073 LUAD RNA-Seq tumor CPT0209100009 190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R1_001.fastq.gz 4110997799 FASTQ R1_L002 unaligned CPTAC3 9d4ad6ac-66af-4216-8aa2-40531e6b3c32 014ad50c2ad11b2e7c2efc343a053957 { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03073.RNA-Seq.R1_L005.A C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R1_001.fastq.gz 3911246975 FASTQ R1_L005 unaligned CPTAC3 b203accd-ac6f-4096-8b45-578c7365a462 d170a586b02bbee5b6f5024e1fa0f099 { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03073.RNA-Seq.R2_L002.T C3N-03073 LUAD RNA-Seq tumor CPT0209100009 190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R2_001.fastq.gz 4794736220 FASTQ R2_L002 unaligned CPTAC3 7a4ecbb4-b7db-4bef-8933-bcee1d84a4d0 c710d856664107b9375d7de6cfc793f5 { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03073.RNA-Seq.R2_L005.A C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R2_001.fastq.gz 4309621063 FASTQ R2_L005 unaligned CPTAC3 9af1321e-4672-466f-b1b3-8365ead84c06 67ca931174ca001eb9035638ef01e72f { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03073.RNA-Seq.transcriptome.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 46a4ba0d-0b16-4c58-839a-4a38eabc6657.rna_seq.transcriptome.gdc_realn.bam 8816259472 BAM transcriptome harmonized CPTAC3 b1a22f4d-1b5d-4aef-894f-cf83f04beba9 a59833a0f149bb70b318f7b92be644db { 'aliquot_tag': 'ALQ_2c497029', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03073.RNA-Seq.transcriptome.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 78537d48-e056-476a-a4d1-fcf284189c46.rna_seq.transcriptome.gdc_realn.bam 9114675396 BAM transcriptome harmonized CPTAC3 e807f199-ce40-4f5f-891b-3672b2b3b7f0 d32bbae5cd76a9cbd2fa5ebb183f2697 { 'aliquot_tag': 'ALQ_11295999', 'gdc_sample_type': 'Primary Tumor' } C3N-03073.WGS.N C3N-03073 LUAD WGS blood_normal CPT0209150002 CPT0209150002.WholeGenome.RP-1303.bam 75684433012 BAM aligned CPTAC3 fcc128a4-b9ac-4ac5-80b9-9189c034e456 0d90f2da059479499497f4d4a52eab77 { 'aliquot_tag': 'ALQ_4e1b0f61', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03073.WGS.N.hg38 C3N-03073 LUAD WGS blood_normal CPT0209150002 d640799e-ed19-4c36-bb6c-7642f28e080a_wgs_gdc_realn.bam 109719914284 BAM harmonized CPTAC3 da91d771-6aa6-477a-8ebf-0e8922f3955b 3befd9b660d625308b62ae041be39d05 { 'aliquot_tag': 'ALQ_4e1b0f61', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03073.WGS.T C3N-03073 LUAD WGS tumor CPT0209100006 CPT0209100006.WholeGenome.RP-1303.bam 80741529480 BAM aligned CPTAC3 92c2a453-112d-4d60-a320-f7b81fad9d15 5188320261e8f7c3b46836fea2c28c77 { 'aliquot_tag': 'ALQ_81964408', 'gdc_sample_type': 'Primary Tumor' } @@ -34495,16 +36785,16 @@ C3N-03074.miRNA-Seq.A C3N-03074 LUAD miRNA-Seq tissue_normal CPT0209180009 19072 C3N-03074.miRNA-Seq.A.hg38 C3N-03074 LUAD miRNA-Seq tissue_normal CPT0209180009 b9eda05c-0b15-4a7c-8102-0e68a6678c55_mirnaseq_gdc_realn.bam 235210508 BAM harmonized CPTAC3 31e5bf53-49fd-4418-a8a4-7fcc3c1c1925 f80b7e8e27c450d0e67319288600fb4f { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03074.miRNA-Seq.T C3N-03074 LUAD miRNA-Seq tumor CPT0209170009 190722_UNC31-K00269_0234_AH7VGTBBXY_TAGCTT_S6_L007_R1_001.unaln.bam 192041758 BAM unaligned CPTAC3 8f1dacf8-e6cf-46f9-bb9e-69e2f2207807 8c91e2041a55041383079daded65023f { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor' } C3N-03074.miRNA-Seq.T.hg38 C3N-03074 LUAD miRNA-Seq tumor CPT0209170009 d0422da4-aa0a-46e6-81eb-9242f5e6c894_mirnaseq_gdc_realn.bam 214810185 BAM harmonized CPTAC3 d9e0c3da-f70a-49f5-87f4-092ac3640a0d 795490028c102d5f40aa104216825d6d { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor' } -C3N-03074.RNA-Seq.chimeric.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 4679bfb7-fe68-4df1-8d6d-e95ce9c9170a.rna_seq.chimeric.gdc_realn.bam 30799492 BAM chimeric harmonized CPTAC3 998207a2-2e7e-4f42-b1c9-df689fab5f62 c04eac9a3e7e746169c57f478cb346a0 { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03074.RNA-Seq.chimeric.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 2d3fe4ce-09eb-48c4-adb7-08720350b18d.rna_seq.chimeric.gdc_realn.bam 31116622 BAM chimeric harmonized CPTAC3 91d87105-fb47-4db3-aa77-5589c2f375e6 f645d2731bc67d1ea18182b93e73930a { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor' } -C3N-03074.RNA-Seq.genomic.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 4679bfb7-fe68-4df1-8d6d-e95ce9c9170a.rna_seq.genomic.gdc_realn.bam 9184045386 BAM genomic harmonized CPTAC3 28a71cdb-9fec-4b84-ba7f-4cff48a1f8cf 571b1d0108ee04864186d86873ff360a { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03074.RNA-Seq.genomic.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 2d3fe4ce-09eb-48c4-adb7-08720350b18d.rna_seq.genomic.gdc_realn.bam 12964128853 BAM genomic harmonized CPTAC3 6c48aafd-68f1-434f-b5fa-bc14cb5a6174 62129c24c6d05cd0212f84fd789c6302 { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor' } -C3N-03074.RNA-Seq.R1_L001.A C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 190702_UNC32-K00270_0187_AH7FK2BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R1_001.fastq.gz 3794109313 FASTQ R1_L001 unaligned CPTAC3 8f4c0806-05ff-4a2e-bddf-0536970bb83a 8cb13d466d5dff87677b06d3595a3dae { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03074.RNA-Seq.R1_L002.T C3N-03074 LUAD RNA-Seq tumor CPT0209170009 190612_UNC31-K00269_0223_BH77CWBBXY_CATAATAC-TTCTAACG_S8_L002_R1_001.fastq.gz 4490953808 FASTQ R1_L002 unaligned CPTAC3 3ae242c5-e591-4e09-b4df-b36c90d9045b 19a4e43eeb2bde20d839dd4ba379d52f { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor' } -C3N-03074.RNA-Seq.R2_L001.A C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 190702_UNC32-K00270_0187_AH7FK2BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R2_001.fastq.gz 4389053383 FASTQ R2_L001 unaligned CPTAC3 357f1496-fdf7-4cb8-af26-a3f6764def24 4bed21a3d3ee83280920c650cf9c18bb { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03074.RNA-Seq.R2_L002.T C3N-03074 LUAD RNA-Seq tumor CPT0209170009 190612_UNC31-K00269_0223_BH77CWBBXY_CATAATAC-TTCTAACG_S8_L002_R2_001.fastq.gz 5068296542 FASTQ R2_L002 unaligned CPTAC3 92a8f144-e2fe-44a0-9ebd-b739f67bacc2 acb6d551810e1727c1e892510825efbc { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor' } -C3N-03074.RNA-Seq.transcriptome.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 4679bfb7-fe68-4df1-8d6d-e95ce9c9170a.rna_seq.transcriptome.gdc_realn.bam 7718181921 BAM transcriptome harmonized CPTAC3 c5ea149b-0cab-4622-b424-2cc600b20526 c23de524b85f64f2fe2d3956a1cdca27 { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03074.RNA-Seq.transcriptome.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 2d3fe4ce-09eb-48c4-adb7-08720350b18d.rna_seq.transcriptome.gdc_realn.bam 10664633834 BAM transcriptome harmonized CPTAC3 cc2a887d-ebc1-444c-811d-2c75e06443ee cd81facb2c9b083f1241e0ada20150da { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor' } +C3N-03074.RNA-Seq.chimeric.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 da756699-bdaf-476c-9a35-24d40fd09fe8.rna_seq.chimeric.gdc_realn.bam 30784633 BAM chimeric harmonized CPTAC3 9c785892-c352-468a-b79d-84e7179d095b 12275cd2d5f4d36237f7c6c0253bf903 { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03074.RNA-Seq.chimeric.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 e923b40d-a40d-47c6-ab3d-ac07bc3cba0f.rna_seq.chimeric.gdc_realn.bam 31114227 BAM chimeric harmonized CPTAC3 7db9cabe-2fcb-4054-829a-dacd64a307dd 2190189e6df4866c360844ae8541ad48 { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor' } +C3N-03074.RNA-Seq.genomic.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 da756699-bdaf-476c-9a35-24d40fd09fe8.rna_seq.genomic.gdc_realn.bam 9185051440 BAM genomic harmonized CPTAC3 28a88dca-16c5-4dae-bab2-5d298b541686 5a3441d09d0986ad1ff7c4c18887f2fa { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03074.RNA-Seq.genomic.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 e923b40d-a40d-47c6-ab3d-ac07bc3cba0f.rna_seq.genomic.gdc_realn.bam 12966177421 BAM genomic harmonized CPTAC3 af1da9d1-dc9d-41e5-bcdd-73bbd01f0eaf 936d8806ebf29fd966d353ddb2454bb8 { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor' } +C3N-03074.RNA-Seq.R1_L001.A C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 190702_UNC32-K00270_0187_AH7FK2BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R1_001.fastq.gz 3794109313 FASTQ R1_L001 unaligned CPTAC3 8f4c0806-05ff-4a2e-bddf-0536970bb83a 8cb13d466d5dff87677b06d3595a3dae { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-03074.RNA-Seq.R1_L002.T C3N-03074 LUAD RNA-Seq tumor CPT0209170009 190612_UNC31-K00269_0223_BH77CWBBXY_CATAATAC-TTCTAACG_S8_L002_R1_001.fastq.gz 4490953808 FASTQ R1_L002 unaligned CPTAC3 3ae242c5-e591-4e09-b4df-b36c90d9045b 19a4e43eeb2bde20d839dd4ba379d52f { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03074.RNA-Seq.R2_L001.A C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 190702_UNC32-K00270_0187_AH7FK2BBXY_ACAGGCGC-CTCTGCCT_S1_L001_R2_001.fastq.gz 4389053383 FASTQ R2_L001 unaligned CPTAC3 357f1496-fdf7-4cb8-af26-a3f6764def24 4bed21a3d3ee83280920c650cf9c18bb { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-03074.RNA-Seq.R2_L002.T C3N-03074 LUAD RNA-Seq tumor CPT0209170009 190612_UNC31-K00269_0223_BH77CWBBXY_CATAATAC-TTCTAACG_S8_L002_R2_001.fastq.gz 5068296542 FASTQ R2_L002 unaligned CPTAC3 92a8f144-e2fe-44a0-9ebd-b739f67bacc2 acb6d551810e1727c1e892510825efbc { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03074.RNA-Seq.transcriptome.A.hg38 C3N-03074 LUAD RNA-Seq tissue_normal CPT0209180009 da756699-bdaf-476c-9a35-24d40fd09fe8.rna_seq.transcriptome.gdc_realn.bam 8763522837 BAM transcriptome harmonized CPTAC3 24d3be2e-fa09-46ea-9bad-2437bb9e5624 4130826fa752f3166764b82fb42dc3ae { 'aliquot_tag': 'ALQ_21591258', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03074.RNA-Seq.transcriptome.T.hg38 C3N-03074 LUAD RNA-Seq tumor CPT0209170009 e923b40d-a40d-47c6-ab3d-ac07bc3cba0f.rna_seq.transcriptome.gdc_realn.bam 12068779649 BAM transcriptome harmonized CPTAC3 2ee5637e-e34f-4b34-8471-ff5c58172bf8 222ee265c37f911ad6765e38736f228e { 'aliquot_tag': 'ALQ_a3098589', 'gdc_sample_type': 'Primary Tumor' } C3N-03074.WGS.N C3N-03074 LUAD WGS blood_normal CPT0209220002 CPT0209220002.WholeGenome.RP-1303.bam 56749986644 BAM aligned CPTAC3 83baf41c-333f-4983-9e18-91c0597987a2 87832c1e34c4c2850f8d2fcd2356d288 { 'aliquot_tag': 'ALQ_7aafa1df', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03074.WGS.N.hg38 C3N-03074 LUAD WGS blood_normal CPT0209220002 8f87622c-43e3-4176-849f-8334b1a8eefa_wgs_gdc_realn.bam 81937168422 BAM harmonized CPTAC3 9cc38e27-d6da-4b5b-ba25-c39f54c4fc3e 596e85c52395897d35710c823cf157e1 { 'aliquot_tag': 'ALQ_7aafa1df', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03074.WGS.T C3N-03074 LUAD WGS tumor CPT0209170006 CPT0209170006.WholeGenome.RP-1303.bam 77270373127 BAM aligned CPTAC3 2f460243-5887-4451-b7c7-c75d9e38a484 2030e1d591de29a56842af643c43ced5 { 'aliquot_tag': 'ALQ_33b69818', 'gdc_sample_type': 'Primary Tumor' } @@ -34525,12 +36815,12 @@ C3N-03076.miRNA-Seq.T C3N-03076 LSCC miRNA-Seq tumor CPT0236420009 190206_UNC31- C3N-03076.miRNA-Seq.T.hg38 C3N-03076 LSCC miRNA-Seq tumor CPT0236420009 45475ad6-f20c-4898-ad2e-8009094f8007_mirnaseq_gdc_realn.bam 207419802 BAM harmonized CPTAC3 3565414e-e943-46d2-95a8-c1b070b280d6 f43fb610a131b508b85265e7a3126fba { 'aliquot_tag': 'ALQ_43e3ec40', 'gdc_sample_type': 'Primary Tumor' } C3N-03076.RNA-Seq.chimeric.A.hg38 C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 6d6d2f52-d8dc-4f1a-904b-b8a472af2af2.rna_seq.chimeric.gdc_realn.bam 233176306 BAM chimeric harmonized CPTAC3 a6ecae89-75c2-4883-ab53-8fcf945b18f1 638917fb422b6df1ba237bda1142cb25 { 'aliquot_tag': 'ALQ_ee3cd861', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03076.RNA-Seq.chimeric.T.hg38 C3N-03076 LSCC RNA-Seq tumor CPT0236420009 14b6c3f0-9c15-41ec-a71f-7cb88b6d5433.rna_seq.chimeric.gdc_realn.bam 150663677 BAM chimeric harmonized CPTAC3 0fd3be3d-4097-41fd-b300-d34622f785fc 8dc85a7794da0ce38faf85818a186809 { 'aliquot_tag': 'ALQ_43e3ec40', 'gdc_sample_type': 'Primary Tumor' } -C3N-03076.RNA-Seq.genomic.A.hg38 C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 6d6d2f52-d8dc-4f1a-904b-b8a472af2af2.rna_seq.genomic.gdc_realn.bam 8731433766 BAM genomic harmonized CPTAC3 d9fab9bf-b96a-41dd-848a-a58ae97f08bf 4560d16ca0f4c3fc39a93a26c495f492 { 'aliquot_tag': 'ALQ_ee3cd861', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03076.RNA-Seq.genomic.T.hg38 C3N-03076 LSCC RNA-Seq tumor CPT0236420009 14b6c3f0-9c15-41ec-a71f-7cb88b6d5433.rna_seq.genomic.gdc_realn.bam 9035335308 BAM genomic harmonized CPTAC3 eb624398-cb78-47d1-a3c1-3ff9f3843411 414cda7e6acb139017d12c0c62da4089 { 'aliquot_tag': 'ALQ_43e3ec40', 'gdc_sample_type': 'Primary Tumor' } -C3N-03076.RNA-Seq.R1_L002.T C3N-03076 LSCC RNA-Seq tumor CPT0236420009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L002_R1_001.fastq.gz 4328238119 FASTQ R1_L002 unaligned CPTAC3 7395d897-f8bf-4128-a34d-ef3377758429 7c62fc4fd360bd196be0c2bb12845ba8 { 'aliquot_tag': 'ALQ_43e3ec40', 'gdc_sample_type': 'Primary Tumor' } -C3N-03076.RNA-Seq.R1_L005.A C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 190208_UNC32-K00270_0146_BH3V2WBBXY_TGACCA_S20_L005_R1_001.fastq.gz 4227933734 FASTQ R1_L005 unaligned CPTAC3 5ee88db7-c799-43d9-9578-ff5566d16417 4f6b6bd22bccc97bbe8631771df3a08b { 'aliquot_tag': 'ALQ_ee3cd861', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03076.RNA-Seq.R2_L002.T C3N-03076 LSCC RNA-Seq tumor CPT0236420009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L002_R2_001.fastq.gz 4736270009 FASTQ R2_L002 unaligned CPTAC3 309c50cf-2f39-4052-b219-bae8da306732 bc6d09d2791b8f830f4a7768433909bb { 'aliquot_tag': 'ALQ_43e3ec40', 'gdc_sample_type': 'Primary Tumor' } -C3N-03076.RNA-Seq.R2_L005.A C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 190208_UNC32-K00270_0146_BH3V2WBBXY_TGACCA_S20_L005_R2_001.fastq.gz 4525794989 FASTQ R2_L005 unaligned CPTAC3 3d0d598c-b5ed-439f-996e-952992e8d2af ebde4e7fb57855e8d8aa36227cad780b { 'aliquot_tag': 'ALQ_ee3cd861', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03076.RNA-Seq.genomic.A.hg38 C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 6d6d2f52-d8dc-4f1a-904b-b8a472af2af2.rna_seq.genomic.gdc_realn.bam 8731433766 BAM genomic harmonized CPTAC3 909e344b-5a0c-4192-822c-c39e838b65ea 4560d16ca0f4c3fc39a93a26c495f492 { 'aliquot_tag': 'ALQ_ee3cd861', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03076.RNA-Seq.genomic.T.hg38 C3N-03076 LSCC RNA-Seq tumor CPT0236420009 14b6c3f0-9c15-41ec-a71f-7cb88b6d5433.rna_seq.genomic.gdc_realn.bam 9035335308 BAM genomic harmonized CPTAC3 55b77a73-72f7-455b-904f-083638014cf6 414cda7e6acb139017d12c0c62da4089 { 'aliquot_tag': 'ALQ_43e3ec40', 'gdc_sample_type': 'Primary Tumor' } +C3N-03076.RNA-Seq.R1_L002.T C3N-03076 LSCC RNA-Seq tumor CPT0236420009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L002_R1_001.fastq.gz 4328238119 FASTQ R1_L002 unaligned CPTAC3 7395d897-f8bf-4128-a34d-ef3377758429 7c62fc4fd360bd196be0c2bb12845ba8 { 'aliquot_tag': 'ALQ_43e3ec40', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03076.RNA-Seq.R1_L005.A C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 190208_UNC32-K00270_0146_BH3V2WBBXY_TGACCA_S20_L005_R1_001.fastq.gz 4227933734 FASTQ R1_L005 unaligned CPTAC3 5ee88db7-c799-43d9-9578-ff5566d16417 4f6b6bd22bccc97bbe8631771df3a08b { 'aliquot_tag': 'ALQ_ee3cd861', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03076.RNA-Seq.R2_L002.T C3N-03076 LSCC RNA-Seq tumor CPT0236420009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L002_R2_001.fastq.gz 4736270009 FASTQ R2_L002 unaligned CPTAC3 309c50cf-2f39-4052-b219-bae8da306732 bc6d09d2791b8f830f4a7768433909bb { 'aliquot_tag': 'ALQ_43e3ec40', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03076.RNA-Seq.R2_L005.A C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 190208_UNC32-K00270_0146_BH3V2WBBXY_TGACCA_S20_L005_R2_001.fastq.gz 4525794989 FASTQ R2_L005 unaligned CPTAC3 3d0d598c-b5ed-439f-996e-952992e8d2af ebde4e7fb57855e8d8aa36227cad780b { 'aliquot_tag': 'ALQ_ee3cd861', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-03076.RNA-Seq.transcriptome.A.hg38 C3N-03076 LSCC RNA-Seq tissue_normal CPT0236430006 6d6d2f52-d8dc-4f1a-904b-b8a472af2af2.rna_seq.transcriptome.gdc_realn.bam 10252350165 BAM transcriptome harmonized CPTAC3 622ffe04-3eed-469b-9ffd-59d923c64ebd dc1c3cbb82a89d3f7d60af100d7a134b { 'aliquot_tag': 'ALQ_ee3cd861', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03076.RNA-Seq.transcriptome.T.hg38 C3N-03076 LSCC RNA-Seq tumor CPT0236420009 14b6c3f0-9c15-41ec-a71f-7cb88b6d5433.rna_seq.transcriptome.gdc_realn.bam 11059712276 BAM transcriptome harmonized CPTAC3 3c6c1ba5-4759-4c8a-9720-6b2bb3848ed0 6ead5aac64a4618396247f04370f94a0 { 'aliquot_tag': 'ALQ_43e3ec40', 'gdc_sample_type': 'Primary Tumor' } C3N-03076.WGS.N C3N-03076 LSCC WGS blood_normal CPT0236470002 CPT0236470002.WholeGenome.RP-1303.bam 99289397934 BAM aligned CPTAC3 cdeefe38-0102-49ec-853e-f8332817d2e2 e772814d63980ed415355c27dd181f39 { 'aliquot_tag': 'ALQ_1cd1bab8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34551,16 +36841,16 @@ C3N-03080.miRNA-Seq.A C3N-03080 LUAD miRNA-Seq tissue_normal CPT0209250009 19072 C3N-03080.miRNA-Seq.A.hg38 C3N-03080 LUAD miRNA-Seq tissue_normal CPT0209250009 a417e5f4-a52d-4840-9c68-40d46d600efe_mirnaseq_gdc_realn.bam 243596760 BAM harmonized CPTAC3 a7a1f91f-8378-498e-9c3a-67634a003e5c f85f77d32a55437761d674e9b034f948 { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03080.miRNA-Seq.T C3N-03080 LUAD miRNA-Seq tumor CPT0209240009 190722_UNC31-K00269_0234_AH7VGTBBXY_GGCTAC_S7_L007_R1_001.unaln.bam 200236995 BAM unaligned CPTAC3 0d555002-c695-4718-a764-13fa8f70e966 14734344530ede8a3237142d4b9cf95a { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor' } C3N-03080.miRNA-Seq.T.hg38 C3N-03080 LUAD miRNA-Seq tumor CPT0209240009 b0459e96-05ee-4005-9375-33053d937313_mirnaseq_gdc_realn.bam 220852438 BAM harmonized CPTAC3 db01b4e7-daf3-499e-828e-3a73ff98fdfd 382e846674ea831733ba9fee1ee0c7bd { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03080.RNA-Seq.chimeric.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 67ff931c-a522-463b-8050-8a1eb4097a2d.rna_seq.chimeric.gdc_realn.bam 37347440 BAM chimeric harmonized CPTAC3 497c6d35-27dc-4de0-baa7-75c59aab0294 3631cc2ea12afb25a32caa7b837baf79 { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03080.RNA-Seq.chimeric.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 2557b1d5-930b-499e-953d-eae7f77c3aaf.rna_seq.chimeric.gdc_realn.bam 34381945 BAM chimeric harmonized CPTAC3 51f8076c-55c7-4701-aa4f-55fec48d3c9b 5563d066961430f72475868283b20607 { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03080.RNA-Seq.genomic.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 67ff931c-a522-463b-8050-8a1eb4097a2d.rna_seq.genomic.gdc_realn.bam 10545590282 BAM genomic harmonized CPTAC3 62064c5d-9c03-4cff-aedd-4af16e6e8909 de1464799661b8eb6c15620b311bdd89 { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03080.RNA-Seq.genomic.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 2557b1d5-930b-499e-953d-eae7f77c3aaf.rna_seq.genomic.gdc_realn.bam 10960745319 BAM genomic harmonized CPTAC3 838c907d-3f60-4399-9a6c-a01cb8d81395 4b354a0574a3bfacbb4db51553dbcae8 { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03080.RNA-Seq.R1_L001.A C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 190702_UNC32-K00270_0187_AH7FK2BBXY_GTGAATAT-TCTCATTC_S2_L001_R1_001.fastq.gz 4690559849 FASTQ R1_L001 unaligned CPTAC3 734aef7a-3a16-4318-b0d5-772fea337fed e46aa8dd62f7f2b4a472adb278ddf965 { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03080.RNA-Seq.R1_L001.T C3N-03080 LUAD RNA-Seq tumor CPT0209240009 190612_UNC31-K00269_0223_BH77CWBBXY_GATCTATC-ATGAGGCT_S3_L001_R1_001.fastq.gz 4263271081 FASTQ R1_L001 unaligned CPTAC3 ad807ed1-3df7-4eb8-ae63-cbb6c2ecd6e1 2a34dd2ce610e66922a3b64f8cd06dd9 { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03080.RNA-Seq.R2_L001.A C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 190702_UNC32-K00270_0187_AH7FK2BBXY_GTGAATAT-TCTCATTC_S2_L001_R2_001.fastq.gz 5156485456 FASTQ R2_L001 unaligned CPTAC3 70282169-1f00-49ac-85ee-7e1fa15aa4b8 a11765661f98a7f9a4b588036ce2fe1b { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03080.RNA-Seq.R2_L001.T C3N-03080 LUAD RNA-Seq tumor CPT0209240009 190612_UNC31-K00269_0223_BH77CWBBXY_GATCTATC-ATGAGGCT_S3_L001_R2_001.fastq.gz 4860372361 FASTQ R2_L001 unaligned CPTAC3 3ef0e286-5822-416d-9edc-551b84c60d8a 3c069f6e07d8b5ac3c9b50863a7b2981 { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03080.RNA-Seq.transcriptome.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 67ff931c-a522-463b-8050-8a1eb4097a2d.rna_seq.transcriptome.gdc_realn.bam 9107877758 BAM transcriptome harmonized CPTAC3 578b9a56-7aae-4027-ac2d-168f0cfa8a97 0b39dda2510d58944d5c767e9d2db4bf { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03080.RNA-Seq.transcriptome.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 2557b1d5-930b-499e-953d-eae7f77c3aaf.rna_seq.transcriptome.gdc_realn.bam 8648699052 BAM transcriptome harmonized CPTAC3 481c0705-d70e-4fc1-8055-2a8fc59fea3f eacd1985043140cb31b2b1e9e8dd4dbb { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03080.RNA-Seq.chimeric.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 a3b71e9c-4eee-43fb-a38b-34d9fca2897b.rna_seq.chimeric.gdc_realn.bam 37338669 BAM chimeric harmonized CPTAC3 f39fe48b-c328-4497-9feb-c4da2d76d3af 72deb8f5183f4e1df5385c5828c5cc83 { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03080.RNA-Seq.chimeric.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 8b41143b-35e2-428b-924d-d57ddfdddb8b.rna_seq.chimeric.gdc_realn.bam 34381938 BAM chimeric harmonized CPTAC3 02a9fa67-a3f0-42fa-9583-8a76a6a06060 ba957c7bf38d58e19ea99c01456f0eac { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03080.RNA-Seq.genomic.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 a3b71e9c-4eee-43fb-a38b-34d9fca2897b.rna_seq.genomic.gdc_realn.bam 10546395059 BAM genomic harmonized CPTAC3 70a510df-9deb-4e1d-81b8-98c85d772502 8922511380a64c2035045f9a6dd9afb6 { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03080.RNA-Seq.genomic.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 8b41143b-35e2-428b-924d-d57ddfdddb8b.rna_seq.genomic.gdc_realn.bam 10961859757 BAM genomic harmonized CPTAC3 3d9772e3-5320-4937-a441-908dbdb66e7e ce789d55b32c3d80cbd48ebc0756b1d0 { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03080.RNA-Seq.R1_L001.A C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 190702_UNC32-K00270_0187_AH7FK2BBXY_GTGAATAT-TCTCATTC_S2_L001_R1_001.fastq.gz 4690559849 FASTQ R1_L001 unaligned CPTAC3 734aef7a-3a16-4318-b0d5-772fea337fed e46aa8dd62f7f2b4a472adb278ddf965 { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-03080.RNA-Seq.R1_L001.T C3N-03080 LUAD RNA-Seq tumor CPT0209240009 190612_UNC31-K00269_0223_BH77CWBBXY_GATCTATC-ATGAGGCT_S3_L001_R1_001.fastq.gz 4263271081 FASTQ R1_L001 unaligned CPTAC3 ad807ed1-3df7-4eb8-ae63-cbb6c2ecd6e1 2a34dd2ce610e66922a3b64f8cd06dd9 { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03080.RNA-Seq.R2_L001.A C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 190702_UNC32-K00270_0187_AH7FK2BBXY_GTGAATAT-TCTCATTC_S2_L001_R2_001.fastq.gz 5156485456 FASTQ R2_L001 unaligned CPTAC3 70282169-1f00-49ac-85ee-7e1fa15aa4b8 a11765661f98a7f9a4b588036ce2fe1b { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-03080.RNA-Seq.R2_L001.T C3N-03080 LUAD RNA-Seq tumor CPT0209240009 190612_UNC31-K00269_0223_BH77CWBBXY_GATCTATC-ATGAGGCT_S3_L001_R2_001.fastq.gz 4860372361 FASTQ R2_L001 unaligned CPTAC3 3ef0e286-5822-416d-9edc-551b84c60d8a 3c069f6e07d8b5ac3c9b50863a7b2981 { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03080.RNA-Seq.transcriptome.A.hg38 C3N-03080 LUAD RNA-Seq tissue_normal CPT0209250009 a3b71e9c-4eee-43fb-a38b-34d9fca2897b.rna_seq.transcriptome.gdc_realn.bam 10343962817 BAM transcriptome harmonized CPTAC3 5d9b0c4e-b8c4-43bb-bb0a-d5d54a531927 c7770b6979069eb72c3ef52d5670dff8 { 'aliquot_tag': 'ALQ_5f5da447', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03080.RNA-Seq.transcriptome.T.hg38 C3N-03080 LUAD RNA-Seq tumor CPT0209240009 8b41143b-35e2-428b-924d-d57ddfdddb8b.rna_seq.transcriptome.gdc_realn.bam 9826052008 BAM transcriptome harmonized CPTAC3 c8505154-d83b-4819-8653-ae433af3c14f 9500929c45c8b5fb9ee2271b323cc6e3 { 'aliquot_tag': 'ALQ_623d8df7', 'gdc_sample_type': 'Primary Tumor' } C3N-03080.WGS.N C3N-03080 LUAD WGS blood_normal CPT0209290002 CPT0209290002.WholeGenome.RP-1303.bam 67946220095 BAM aligned CPTAC3 087630ba-8b4a-4d81-a66c-f2a9aa03df96 a483b027248228ed559acb42462bf03d { 'aliquot_tag': 'ALQ_d7f90ce', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03080.WGS.N.hg38 C3N-03080 LUAD WGS blood_normal CPT0209290002 98e20abb-8675-4c58-b729-d4e6c6c0a2ac_wgs_gdc_realn.bam 100146822480 BAM harmonized CPTAC3 50165bf1-3e52-4800-ad78-eb7ba887f5be 330a644ee325778fc7bd8e1c2199cd24 { 'aliquot_tag': 'ALQ_d7f90ce', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03080.WGS.T C3N-03080 LUAD WGS tumor CPT0209240006 CPT0209240006.WholeGenome.RP-1303.bam 98359550521 BAM aligned CPTAC3 0940f0e8-0674-44c6-a506-7123c825591f f83204d41c27c0504adffda181207b91 { 'aliquot_tag': 'ALQ_f2829066', 'gdc_sample_type': 'Primary Tumor' } @@ -34578,9 +36868,9 @@ C3N-03086.MethArray.Red.T C3N-03086 PDA Methylation Array tumor CPT0209310007 20 C3N-03086.miRNA-Seq.T C3N-03086 PDA miRNA-Seq tumor CPT0209310014 190828_UNC32-K00270_0200_BH7GVJBBXY_CAGGCG_S170_L007_R1_001.unaln.bam 173825437 BAM unaligned CPTAC3 8976eca8-a185-4a17-b96a-fd06a0c4279a 2ac40a28375cebb131a2dd4e767a7f20 { 'aliquot_tag': 'ALQ_62b9cde', 'gdc_sample_type': 'Primary Tumor' } C3N-03086.miRNA-Seq.T.hg38 C3N-03086 PDA miRNA-Seq tumor CPT0209310014 dc12593f-588d-48c9-a871-409bfd080502_mirnaseq_gdc_realn.bam 199187558 BAM harmonized CPTAC3 f3d73cc1-ac98-4a4a-8958-4c41feac147c 63aa8f5fd7af0c39938f2a609a6e0567 { 'aliquot_tag': 'ALQ_62b9cde', 'gdc_sample_type': 'Primary Tumor' } C3N-03086.RNA-Seq.chimeric.T.hg38 C3N-03086 PDA RNA-Seq tumor CPT0209310014 e5d89f91-87dc-4ab9-94a2-60fa6cb6d023.rna_seq.chimeric.gdc_realn.bam 35433110 BAM chimeric harmonized CPTAC3 b9f7e672-a29d-4984-b44e-a420a52b2b02 b8c0f9ee78693b6f166ce62220d6b942 { 'aliquot_tag': 'ALQ_62b9cde', 'gdc_sample_type': 'Primary Tumor' } -C3N-03086.RNA-Seq.genomic.T.hg38 C3N-03086 PDA RNA-Seq tumor CPT0209310014 e5d89f91-87dc-4ab9-94a2-60fa6cb6d023.rna_seq.genomic.gdc_realn.bam 7700780094 BAM genomic harmonized CPTAC3 e12638d8-5801-4423-841b-4598623da1ee 94f7fadce5f2b2ef4a6fed6a01e1e3d2 { 'aliquot_tag': 'ALQ_62b9cde', 'gdc_sample_type': 'Primary Tumor' } -C3N-03086.RNA-Seq.R1_L007.T C3N-03086 PDA RNA-Seq tumor CPT0209310014 190702_UNC32-K00270_0188_BH7CLJBBXY_AACGTTCC-GGAGTACT_S27_L007_R1_001.fastq.gz 3663477057 FASTQ R1_L007 unaligned CPTAC3 3d918449-c522-4a4e-8846-8d8f61ff618d 40e530a7e89ad6222439c9d293ba2e92 { 'aliquot_tag': 'ALQ_62b9cde', 'gdc_sample_type': 'Primary Tumor' } -C3N-03086.RNA-Seq.R2_L007.T C3N-03086 PDA RNA-Seq tumor CPT0209310014 190702_UNC32-K00270_0188_BH7CLJBBXY_AACGTTCC-GGAGTACT_S27_L007_R2_001.fastq.gz 4207928137 FASTQ R2_L007 unaligned CPTAC3 761a3cf3-5ad7-4353-877e-19aee8358299 a32a5cc43697408ace84005c9b4bfa59 { 'aliquot_tag': 'ALQ_62b9cde', 'gdc_sample_type': 'Primary Tumor' } +C3N-03086.RNA-Seq.genomic.T.hg38 C3N-03086 PDA RNA-Seq tumor CPT0209310014 e5d89f91-87dc-4ab9-94a2-60fa6cb6d023.rna_seq.genomic.gdc_realn.bam 7700780094 BAM genomic harmonized CPTAC3 b5dc248e-b83d-43cc-a13d-cfd6a271ad67 94f7fadce5f2b2ef4a6fed6a01e1e3d2 { 'aliquot_tag': 'ALQ_62b9cde', 'gdc_sample_type': 'Primary Tumor' } +C3N-03086.RNA-Seq.R1_L007.T C3N-03086 PDA RNA-Seq tumor CPT0209310014 190702_UNC32-K00270_0188_BH7CLJBBXY_AACGTTCC-GGAGTACT_S27_L007_R1_001.fastq.gz 3663477057 FASTQ R1_L007 unaligned CPTAC3 3d918449-c522-4a4e-8846-8d8f61ff618d 40e530a7e89ad6222439c9d293ba2e92 { 'aliquot_tag': 'ALQ_62b9cde', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03086.RNA-Seq.R2_L007.T C3N-03086 PDA RNA-Seq tumor CPT0209310014 190702_UNC32-K00270_0188_BH7CLJBBXY_AACGTTCC-GGAGTACT_S27_L007_R2_001.fastq.gz 4207928137 FASTQ R2_L007 unaligned CPTAC3 761a3cf3-5ad7-4353-877e-19aee8358299 a32a5cc43697408ace84005c9b4bfa59 { 'aliquot_tag': 'ALQ_62b9cde', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-03086.RNA-Seq.transcriptome.T.hg38 C3N-03086 PDA RNA-Seq tumor CPT0209310014 e5d89f91-87dc-4ab9-94a2-60fa6cb6d023.rna_seq.transcriptome.gdc_realn.bam 10429293572 BAM transcriptome harmonized CPTAC3 2dabb98a-c9b0-4873-ad26-fd03fa1897b5 1b9ff233da8eb5e67541a34b6ea61c78 { 'aliquot_tag': 'ALQ_62b9cde', 'gdc_sample_type': 'Primary Tumor' } C3N-03086.WGS.N C3N-03086 PDA WGS blood_normal CPT0209360002 CPT0209360002.WholeGenome.RP-1303.bam 57486339521 BAM aligned CPTAC3 b1b50ed4-87ed-4357-a380-0750e05ebb9f c5be797a01593d260a03d67eef8c1007 { 'aliquot_tag': 'ALQ_4473d4ba', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03086.WGS.N.hg38 C3N-03086 PDA WGS blood_normal CPT0209360002 881588b7-980f-441f-af50-97129183b0e4_wgs_gdc_realn.bam 82665510544 BAM harmonized CPTAC3 b9ec89f1-e299-418c-9c70-c2ca6a7e563b 31f2f6291841521690ead7119a0b3b8e { 'aliquot_tag': 'ALQ_4473d4ba', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34597,9 +36887,9 @@ C3N-03088.MethArray.Red.T C3N-03088 GBM Methylation Array tumor CPT0209440005 20 C3N-03088.miRNA-Seq.T C3N-03088 GBM miRNA-Seq tumor CPT0209440008 190228_UNC32-K00270_0151_AHYLY3BBXX_CATTTT_S35_L008_R1_001.unaln.bam 215618509 BAM unaligned CPTAC3 449f2617-ed59-40d4-9091-6d3d52f30ebe 6e052aa0be1ce9354e5b7b1e35e91716 { 'aliquot_tag': 'ALQ_c3635e7c', 'gdc_sample_type': 'Primary Tumor' } C3N-03088.miRNA-Seq.T.hg38 C3N-03088 GBM miRNA-Seq tumor CPT0209440008 099a1c9a-18ad-4cd6-aff8-469e21502f3d_mirnaseq_gdc_realn.bam 243581270 BAM harmonized CPTAC3 5cb21c7c-62d1-4051-89e5-43732341df34 954f5d55ff69d7931b2c55ae833d93a8 { 'aliquot_tag': 'ALQ_c3635e7c', 'gdc_sample_type': 'Primary Tumor' } C3N-03088.RNA-Seq.chimeric.T.hg38 C3N-03088 GBM RNA-Seq tumor CPT0209440008 cc47934d-2a0e-4e67-8654-253ac517dc81.rna_seq.chimeric.gdc_realn.bam 48495600 BAM chimeric harmonized CPTAC3 70b17963-8b5f-4c99-a7f7-f26967d8a6e4 8ca6eb04223bd0d2a2f59273036af660 { 'aliquot_tag': 'ALQ_c3635e7c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03088.RNA-Seq.genomic.T.hg38 C3N-03088 GBM RNA-Seq tumor CPT0209440008 cc47934d-2a0e-4e67-8654-253ac517dc81.rna_seq.genomic.gdc_realn.bam 9622206522 BAM genomic harmonized CPTAC3 18cd27ff-bad3-4ee3-b0fa-08342bd6ed0f a1532d6b20f99f17f676e5e710b5431e { 'aliquot_tag': 'ALQ_c3635e7c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03088.RNA-Seq.R1_L004.T C3N-03088 GBM RNA-Seq tumor CPT0209440008 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L004_R1_001.fastq.gz 4440225897 FASTQ R1_L004 unaligned CPTAC3 6a007bb3-c970-4fc3-80d3-4511ef0c140c c1529f9849adb88ddba70392b6409e77 { 'aliquot_tag': 'ALQ_c3635e7c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03088.RNA-Seq.R2_L004.T C3N-03088 GBM RNA-Seq tumor CPT0209440008 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L004_R2_001.fastq.gz 4652682779 FASTQ R2_L004 unaligned CPTAC3 c28802fe-5b81-45ae-878d-deaab3c7e4b7 d2df709eb8d32501f70a120b34de3267 { 'aliquot_tag': 'ALQ_c3635e7c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03088.RNA-Seq.genomic.T.hg38 C3N-03088 GBM RNA-Seq tumor CPT0209440008 cc47934d-2a0e-4e67-8654-253ac517dc81.rna_seq.genomic.gdc_realn.bam 9622206522 BAM genomic harmonized CPTAC3 82252a48-4fcc-49d9-a037-ebacd078d343 a1532d6b20f99f17f676e5e710b5431e { 'aliquot_tag': 'ALQ_c3635e7c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03088.RNA-Seq.R1_L004.T C3N-03088 GBM RNA-Seq tumor CPT0209440008 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L004_R1_001.fastq.gz 4440225897 FASTQ R1_L004 unaligned CPTAC3 6a007bb3-c970-4fc3-80d3-4511ef0c140c c1529f9849adb88ddba70392b6409e77 { 'aliquot_tag': 'ALQ_c3635e7c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03088.RNA-Seq.R2_L004.T C3N-03088 GBM RNA-Seq tumor CPT0209440008 190125_UNC31-K00269_0184_AH3M32BBXY_CGATGT_S9_L004_R2_001.fastq.gz 4652682779 FASTQ R2_L004 unaligned CPTAC3 c28802fe-5b81-45ae-878d-deaab3c7e4b7 d2df709eb8d32501f70a120b34de3267 { 'aliquot_tag': 'ALQ_c3635e7c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-03088.RNA-Seq.transcriptome.T.hg38 C3N-03088 GBM RNA-Seq tumor CPT0209440008 cc47934d-2a0e-4e67-8654-253ac517dc81.rna_seq.transcriptome.gdc_realn.bam 13332652063 BAM transcriptome harmonized CPTAC3 d1081d74-c000-412f-a029-8b999c8b4c5e 3e2ff51f4ef1a89b4308ed333615c469 { 'aliquot_tag': 'ALQ_c3635e7c', 'gdc_sample_type': 'Primary Tumor' } C3N-03088.WGS.N C3N-03088 GBM WGS blood_normal CPT0209480002 CPT0209480002.WholeGenome.RP-1303.bam 65777731967 BAM aligned CPTAC3 a00e6ef8-f6d9-4b54-b112-e7382e9e44fb f361d35df042ee4e8595cab2f089aca6 { 'aliquot_tag': 'ALQ_e6465a63', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03088.WGS.N.hg38 C3N-03088 GBM WGS blood_normal CPT0209480002 36c1c91c-84e9-4021-819e-ccb9d6f8f637_wgs_gdc_realn.bam 97201246792 BAM harmonized CPTAC3 9238b256-117e-46b9-9f38-b6a08a09cc30 150a5e3a4bef4fcb3dbf7458c84f7a9d { 'aliquot_tag': 'ALQ_e6465a63', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34619,12 +36909,12 @@ C3N-03092.miRNA-Seq.T C3N-03092 LSCC miRNA-Seq tumor CPT0197480009 190206_UNC31- C3N-03092.miRNA-Seq.T.hg38 C3N-03092 LSCC miRNA-Seq tumor CPT0197480009 94f4b8a4-e3e0-402c-8c77-ea0d95857a0f_mirnaseq_gdc_realn.bam 199707174 BAM harmonized CPTAC3 f24c26a1-4edc-454f-bbe9-466e27506c43 85848f08757782815e10a934aeb75706 { 'aliquot_tag': 'ALQ_769df58', 'gdc_sample_type': 'Primary Tumor' } C3N-03092.RNA-Seq.chimeric.A.hg38 C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 c530fdd2-c4cb-4df5-8b5e-1ce0fc44ea6f.rna_seq.chimeric.gdc_realn.bam 63731568 BAM chimeric harmonized CPTAC3 af7a0459-90b7-415b-bce1-fc95802390d1 d5689265053b6a8a322a7de34e42fd7f { 'aliquot_tag': 'ALQ_8685145c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03092.RNA-Seq.chimeric.T.hg38 C3N-03092 LSCC RNA-Seq tumor CPT0197480009 ec8f8dd0-6583-4584-ab50-45641d308cb1.rna_seq.chimeric.gdc_realn.bam 70117071 BAM chimeric harmonized CPTAC3 6889e0a8-57db-4b7d-ad0d-87bbf1a2074f 6e0337e6ae70439820400b60df44073d { 'aliquot_tag': 'ALQ_769df58', 'gdc_sample_type': 'Primary Tumor' } -C3N-03092.RNA-Seq.genomic.A.hg38 C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 c530fdd2-c4cb-4df5-8b5e-1ce0fc44ea6f.rna_seq.genomic.gdc_realn.bam 8094632776 BAM genomic harmonized CPTAC3 b08334a1-5e37-4364-8968-2ee23022def6 d5ada8a44115ce1a8aac72481455ac79 { 'aliquot_tag': 'ALQ_8685145c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03092.RNA-Seq.genomic.T.hg38 C3N-03092 LSCC RNA-Seq tumor CPT0197480009 ec8f8dd0-6583-4584-ab50-45641d308cb1.rna_seq.genomic.gdc_realn.bam 8925108618 BAM genomic harmonized CPTAC3 701a9b5f-5f6a-4773-8acd-84f2bb3999d2 3809a702bdbb9827bbd3bf0dd13a6586 { 'aliquot_tag': 'ALQ_769df58', 'gdc_sample_type': 'Primary Tumor' } -C3N-03092.RNA-Seq.R1_L001.T C3N-03092 LSCC RNA-Seq tumor CPT0197480009 190320_UNC31-K00269_0200_BH5CF5BBXY_CTTGTA_S3_L001_R1_001.fastq.gz 3774654674 FASTQ R1_L001 unaligned CPTAC3 d5399bad-144d-41e8-85bb-d6fffb1c0576 a706ccf2b917729a33e578cf59d5d3c0 { 'aliquot_tag': 'ALQ_769df58', 'gdc_sample_type': 'Primary Tumor' } -C3N-03092.RNA-Seq.R1_L003.A C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 190208_UNC32-K00270_0145_AH3VHMBBXY_TAGCTT_S11_L003_R1_001.fastq.gz 3744159218 FASTQ R1_L003 unaligned CPTAC3 0433577e-e787-4c63-adc1-2ef179880630 facc1344800f3a5c49287788a405b42e { 'aliquot_tag': 'ALQ_8685145c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03092.RNA-Seq.R2_L001.T C3N-03092 LSCC RNA-Seq tumor CPT0197480009 190320_UNC31-K00269_0200_BH5CF5BBXY_CTTGTA_S3_L001_R2_001.fastq.gz 4180670027 FASTQ R2_L001 unaligned CPTAC3 69c838f2-50ed-4ef2-8916-36e907fa0c7d d1c9e61acd4203042e2a37eee22bbc67 { 'aliquot_tag': 'ALQ_769df58', 'gdc_sample_type': 'Primary Tumor' } -C3N-03092.RNA-Seq.R2_L003.A C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 190208_UNC32-K00270_0145_AH3VHMBBXY_TAGCTT_S11_L003_R2_001.fastq.gz 4132832278 FASTQ R2_L003 unaligned CPTAC3 a1708f79-7f69-4f43-a21c-c33ae1360110 b05bff5b5aec7d0f4b563aed9b5623ad { 'aliquot_tag': 'ALQ_8685145c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03092.RNA-Seq.genomic.A.hg38 C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 c530fdd2-c4cb-4df5-8b5e-1ce0fc44ea6f.rna_seq.genomic.gdc_realn.bam 8094632776 BAM genomic harmonized CPTAC3 ce068033-7936-4751-84d5-7949117385cf d5ada8a44115ce1a8aac72481455ac79 { 'aliquot_tag': 'ALQ_8685145c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03092.RNA-Seq.genomic.T.hg38 C3N-03092 LSCC RNA-Seq tumor CPT0197480009 ec8f8dd0-6583-4584-ab50-45641d308cb1.rna_seq.genomic.gdc_realn.bam 8925108618 BAM genomic harmonized CPTAC3 8c13a432-d758-4249-b3e9-360b70863b87 3809a702bdbb9827bbd3bf0dd13a6586 { 'aliquot_tag': 'ALQ_769df58', 'gdc_sample_type': 'Primary Tumor' } +C3N-03092.RNA-Seq.R1_L001.T C3N-03092 LSCC RNA-Seq tumor CPT0197480009 190320_UNC31-K00269_0200_BH5CF5BBXY_CTTGTA_S3_L001_R1_001.fastq.gz 3774654674 FASTQ R1_L001 unaligned CPTAC3 d5399bad-144d-41e8-85bb-d6fffb1c0576 a706ccf2b917729a33e578cf59d5d3c0 { 'aliquot_tag': 'ALQ_769df58', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03092.RNA-Seq.R1_L003.A C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 190208_UNC32-K00270_0145_AH3VHMBBXY_TAGCTT_S11_L003_R1_001.fastq.gz 3744159218 FASTQ R1_L003 unaligned CPTAC3 0433577e-e787-4c63-adc1-2ef179880630 facc1344800f3a5c49287788a405b42e { 'aliquot_tag': 'ALQ_8685145c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03092.RNA-Seq.R2_L001.T C3N-03092 LSCC RNA-Seq tumor CPT0197480009 190320_UNC31-K00269_0200_BH5CF5BBXY_CTTGTA_S3_L001_R2_001.fastq.gz 4180670027 FASTQ R2_L001 unaligned CPTAC3 69c838f2-50ed-4ef2-8916-36e907fa0c7d d1c9e61acd4203042e2a37eee22bbc67 { 'aliquot_tag': 'ALQ_769df58', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03092.RNA-Seq.R2_L003.A C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 190208_UNC32-K00270_0145_AH3VHMBBXY_TAGCTT_S11_L003_R2_001.fastq.gz 4132832278 FASTQ R2_L003 unaligned CPTAC3 a1708f79-7f69-4f43-a21c-c33ae1360110 b05bff5b5aec7d0f4b563aed9b5623ad { 'aliquot_tag': 'ALQ_8685145c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3N-03092.RNA-Seq.transcriptome.A.hg38 C3N-03092 LSCC RNA-Seq tissue_normal CPT0197520009 c530fdd2-c4cb-4df5-8b5e-1ce0fc44ea6f.rna_seq.transcriptome.gdc_realn.bam 9095532531 BAM transcriptome harmonized CPTAC3 e8a6523b-8e05-42ce-b13e-48b75a7d2418 0250f57d0d98f0a09faa94cc90188ddb { 'aliquot_tag': 'ALQ_8685145c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03092.RNA-Seq.transcriptome.T.hg38 C3N-03092 LSCC RNA-Seq tumor CPT0197480009 ec8f8dd0-6583-4584-ab50-45641d308cb1.rna_seq.transcriptome.gdc_realn.bam 10706445565 BAM transcriptome harmonized CPTAC3 840d8afc-1b9d-4a19-b01f-bf0b8df37d9b 86c9790efd14eb89db6a065def442085 { 'aliquot_tag': 'ALQ_769df58', 'gdc_sample_type': 'Primary Tumor' } C3N-03092.WGS.N C3N-03092 LSCC WGS blood_normal CPT0197660002 CPT0197660002.WholeGenome.RP-1303.bam 50233346465 BAM aligned CPTAC3 9fe71701-59bd-4f07-9841-db4779f54690 08f8f41a08f8996b0eb5459a2125942b { 'aliquot_tag': 'ALQ_624319ba', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34647,12 +36937,12 @@ C3N-03093.miRNA-Seq.T C3N-03093 LSCC miRNA-Seq tumor CPT0197740009 190206_UNC31- C3N-03093.miRNA-Seq.T.hg38 C3N-03093 LSCC miRNA-Seq tumor CPT0197740009 d3c94de2-dbbe-46f2-aacf-d848be1593ad_mirnaseq_gdc_realn.bam 226913614 BAM harmonized CPTAC3 71116b93-46bd-4249-84ca-941f90994626 e055492594a45604d302714713988c93 { 'aliquot_tag': 'ALQ_440d40f7', 'gdc_sample_type': 'Primary Tumor' } C3N-03093.RNA-Seq.chimeric.A.hg38 C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 3762a9a6-7e21-44f9-b973-f0a99ee4d763.rna_seq.chimeric.gdc_realn.bam 78901141 BAM chimeric harmonized CPTAC3 30db42c8-4131-47cd-bd29-59a28ac67354 04e42136ea45e66852a47061e21dfca4 { 'aliquot_tag': 'ALQ_cf9ba142', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03093.RNA-Seq.chimeric.T.hg38 C3N-03093 LSCC RNA-Seq tumor CPT0197740009 261f486a-bcd4-4c37-a812-f2cc6ef7cc7b.rna_seq.chimeric.gdc_realn.bam 92014497 BAM chimeric harmonized CPTAC3 b8324c4d-7865-49dc-9a76-e8e5740cff5d 5059f0f7f23831062c95e5b708154dbc { 'aliquot_tag': 'ALQ_440d40f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03093.RNA-Seq.genomic.A.hg38 C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 3762a9a6-7e21-44f9-b973-f0a99ee4d763.rna_seq.genomic.gdc_realn.bam 8252152052 BAM genomic harmonized CPTAC3 3f77184d-61e0-4fa3-8da0-0709a7929363 2b264f48de500374609400f2b6f40a2a { 'aliquot_tag': 'ALQ_cf9ba142', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03093.RNA-Seq.genomic.T.hg38 C3N-03093 LSCC RNA-Seq tumor CPT0197740009 261f486a-bcd4-4c37-a812-f2cc6ef7cc7b.rna_seq.genomic.gdc_realn.bam 8690914086 BAM genomic harmonized CPTAC3 57c37e22-fdbd-4031-8b92-087e8397413d cd083bf06cdff53ccd0e5319eaf8a19a { 'aliquot_tag': 'ALQ_440d40f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03093.RNA-Seq.R1_L001.T C3N-03093 LSCC RNA-Seq tumor CPT0197740009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L001_R1_001.fastq.gz 3533510834 FASTQ R1_L001 unaligned CPTAC3 bc716734-dbf0-4fa5-9a37-c104857a9766 4355436716648b087235bd1a66925ba1 { 'aliquot_tag': 'ALQ_440d40f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03093.RNA-Seq.R1_L003.A C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 190208_UNC32-K00270_0145_AH3VHMBBXY_GGCTAC_S10_L003_R1_001.fastq.gz 3623811658 FASTQ R1_L003 unaligned CPTAC3 4bd91bf6-09b1-46a9-b033-f3b3656523e1 607d454dfd724801cc890711d3659300 { 'aliquot_tag': 'ALQ_cf9ba142', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03093.RNA-Seq.R2_L001.T C3N-03093 LSCC RNA-Seq tumor CPT0197740009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L001_R2_001.fastq.gz 3865247948 FASTQ R2_L001 unaligned CPTAC3 9916c1f0-9378-4125-bb73-5cd18096344e cbd69e06b1d447f486407dc8d44d4f2e { 'aliquot_tag': 'ALQ_440d40f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03093.RNA-Seq.R2_L003.A C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 190208_UNC32-K00270_0145_AH3VHMBBXY_GGCTAC_S10_L003_R2_001.fastq.gz 4199432680 FASTQ R2_L003 unaligned CPTAC3 5f53ce1f-acdf-4108-b789-819849706795 e6f220fd50135b995d9fc10561616dda { 'aliquot_tag': 'ALQ_cf9ba142', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03093.RNA-Seq.genomic.A.hg38 C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 3762a9a6-7e21-44f9-b973-f0a99ee4d763.rna_seq.genomic.gdc_realn.bam 8252152052 BAM genomic harmonized CPTAC3 e68e4b72-f6c3-4073-94cd-d7a190f5c9da 2b264f48de500374609400f2b6f40a2a { 'aliquot_tag': 'ALQ_cf9ba142', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03093.RNA-Seq.genomic.T.hg38 C3N-03093 LSCC RNA-Seq tumor CPT0197740009 261f486a-bcd4-4c37-a812-f2cc6ef7cc7b.rna_seq.genomic.gdc_realn.bam 8690914086 BAM genomic harmonized CPTAC3 bf45da6d-1596-4dd3-a337-4305dcc05e6e cd083bf06cdff53ccd0e5319eaf8a19a { 'aliquot_tag': 'ALQ_440d40f7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03093.RNA-Seq.R1_L001.T C3N-03093 LSCC RNA-Seq tumor CPT0197740009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L001_R1_001.fastq.gz 3533510834 FASTQ R1_L001 unaligned CPTAC3 bc716734-dbf0-4fa5-9a37-c104857a9766 4355436716648b087235bd1a66925ba1 { 'aliquot_tag': 'ALQ_440d40f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03093.RNA-Seq.R1_L003.A C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 190208_UNC32-K00270_0145_AH3VHMBBXY_GGCTAC_S10_L003_R1_001.fastq.gz 3623811658 FASTQ R1_L003 unaligned CPTAC3 4bd91bf6-09b1-46a9-b033-f3b3656523e1 607d454dfd724801cc890711d3659300 { 'aliquot_tag': 'ALQ_cf9ba142', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03093.RNA-Seq.R2_L001.T C3N-03093 LSCC RNA-Seq tumor CPT0197740009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L001_R2_001.fastq.gz 3865247948 FASTQ R2_L001 unaligned CPTAC3 9916c1f0-9378-4125-bb73-5cd18096344e cbd69e06b1d447f486407dc8d44d4f2e { 'aliquot_tag': 'ALQ_440d40f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03093.RNA-Seq.R2_L003.A C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 190208_UNC32-K00270_0145_AH3VHMBBXY_GGCTAC_S10_L003_R2_001.fastq.gz 4199432680 FASTQ R2_L003 unaligned CPTAC3 5f53ce1f-acdf-4108-b789-819849706795 e6f220fd50135b995d9fc10561616dda { 'aliquot_tag': 'ALQ_cf9ba142', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3N-03093.RNA-Seq.transcriptome.A.hg38 C3N-03093 LSCC RNA-Seq tissue_normal CPT0197860009 3762a9a6-7e21-44f9-b973-f0a99ee4d763.rna_seq.transcriptome.gdc_realn.bam 8702290298 BAM transcriptome harmonized CPTAC3 85805904-9937-49ed-924f-bf31c0f3403f 6572a4404f848aa5d08008cd2a09d50e { 'aliquot_tag': 'ALQ_cf9ba142', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03093.RNA-Seq.transcriptome.T.hg38 C3N-03093 LSCC RNA-Seq tumor CPT0197740009 261f486a-bcd4-4c37-a812-f2cc6ef7cc7b.rna_seq.transcriptome.gdc_realn.bam 9061350565 BAM transcriptome harmonized CPTAC3 0794f029-9280-47a1-be14-315e9730d2e6 92e83b60837af5ab3b37b164a31ca635 { 'aliquot_tag': 'ALQ_440d40f7', 'gdc_sample_type': 'Primary Tumor' } C3N-03093.WGS.N C3N-03093 LSCC WGS blood_normal CPT0198000002 CPT0198000002.WholeGenome.RP-1303.bam 109740346429 BAM aligned CPTAC3 f1d0e8a9-55a2-4be0-b5f0-af2364106ba7 b57b3dc8632d12b7a65f3e9707ccf5e1 { 'aliquot_tag': 'ALQ_cd127fee', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34675,12 +36965,12 @@ C3N-03173.miRNA-Seq.T C3N-03173 PDA miRNA-Seq tumor CPT0186040010 190813_UNC32-K C3N-03173.miRNA-Seq.T.hg38 C3N-03173 PDA miRNA-Seq tumor CPT0186040010 68f10894-282e-4a7f-b33d-a090c9441f08_mirnaseq_gdc_realn.bam 244402869 BAM harmonized CPTAC3 4962433c-8282-418d-a7b7-9b8030e67397 c5deec91e61b1824eb51f3ce7a879b61 { 'aliquot_tag': 'ALQ_5312f280', 'gdc_sample_type': 'Primary Tumor' } C3N-03173.RNA-Seq.chimeric.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 fa404154-7ff0-41f6-9ce3-81412c8578b1.rna_seq.chimeric.gdc_realn.bam 34844426 BAM chimeric harmonized CPTAC3 28e93704-ad30-438c-9e49-4aaf86b5544b 51e6c51ca8dad5779bd0a7e9f6a307ff { 'aliquot_tag': 'ALQ_6e72db30', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03173.RNA-Seq.chimeric.T.hg38 C3N-03173 PDA RNA-Seq tumor CPT0186040010 c489a45e-719a-4659-82e5-03dfa2cd477a.rna_seq.chimeric.gdc_realn.bam 42694648 BAM chimeric harmonized CPTAC3 3d8efe19-4e8f-4282-b577-e417bab1fbd9 0acd000d86999ab4325979e390f7ecdf { 'aliquot_tag': 'ALQ_5312f280', 'gdc_sample_type': 'Primary Tumor' } -C3N-03173.RNA-Seq.genomic.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 fa404154-7ff0-41f6-9ce3-81412c8578b1.rna_seq.genomic.gdc_realn.bam 7141937358 BAM genomic harmonized CPTAC3 1732cebf-daab-4efd-a135-f90cddd7f849 b83958275cec54a447f640cafdf976a7 { 'aliquot_tag': 'ALQ_6e72db30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03173.RNA-Seq.genomic.T.hg38 C3N-03173 PDA RNA-Seq tumor CPT0186040010 c489a45e-719a-4659-82e5-03dfa2cd477a.rna_seq.genomic.gdc_realn.bam 9054039193 BAM genomic harmonized CPTAC3 f3ef3f31-fcd0-4c38-aa99-85746812ff5c 2e8fb7a63929f531c3a5558543d9cdc3 { 'aliquot_tag': 'ALQ_5312f280', 'gdc_sample_type': 'Primary Tumor' } -C3N-03173.RNA-Seq.R1_L006.A C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 190702_UNC32-K00270_0188_BH7CLJBBXY_GTCGGAGC-GGTTATAA_S21_L006_R1_001.fastq.gz 3156533483 FASTQ R1_L006 unaligned CPTAC3 3cc111fa-a35b-4d22-9537-d26f91788b33 edae608f77cacdd7747e2b18e6d2c7c7 { 'aliquot_tag': 'ALQ_6e72db30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03173.RNA-Seq.R1_L007.T C3N-03173 PDA RNA-Seq tumor CPT0186040010 190702_UNC32-K00270_0187_AH7FK2BBXY_AATCCGGA-CTACAGTT_S24_L007_R1_001.fastq.gz 4243130759 FASTQ R1_L007 unaligned CPTAC3 9b57c2ff-046e-4890-b297-78b781681c4c 0d60a65ba39fabbaaada54ebeb3f8ba5 { 'aliquot_tag': 'ALQ_5312f280', 'gdc_sample_type': 'Primary Tumor' } -C3N-03173.RNA-Seq.R2_L006.A C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 190702_UNC32-K00270_0188_BH7CLJBBXY_GTCGGAGC-GGTTATAA_S21_L006_R2_001.fastq.gz 3695447076 FASTQ R2_L006 unaligned CPTAC3 214d357b-8e8e-4fa9-ac51-e0543c1b85cb e23af47a11772f763065fe73cf7abf4c { 'aliquot_tag': 'ALQ_6e72db30', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03173.RNA-Seq.R2_L007.T C3N-03173 PDA RNA-Seq tumor CPT0186040010 190702_UNC32-K00270_0187_AH7FK2BBXY_AATCCGGA-CTACAGTT_S24_L007_R2_001.fastq.gz 4810406574 FASTQ R2_L007 unaligned CPTAC3 5c17c0fe-363f-4d67-b655-e6113c9e375d c7b4682a9b3fb2a946d33a4b2f69c9a6 { 'aliquot_tag': 'ALQ_5312f280', 'gdc_sample_type': 'Primary Tumor' } +C3N-03173.RNA-Seq.genomic.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 fa404154-7ff0-41f6-9ce3-81412c8578b1.rna_seq.genomic.gdc_realn.bam 7141937358 BAM genomic harmonized CPTAC3 29aa6471-1d8e-4a84-9d80-9a774761d1a9 b83958275cec54a447f640cafdf976a7 { 'aliquot_tag': 'ALQ_6e72db30', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03173.RNA-Seq.genomic.T.hg38 C3N-03173 PDA RNA-Seq tumor CPT0186040010 c489a45e-719a-4659-82e5-03dfa2cd477a.rna_seq.genomic.gdc_realn.bam 9054039193 BAM genomic harmonized CPTAC3 4cd36f6a-3e56-4712-97b3-32356d25ef8d 2e8fb7a63929f531c3a5558543d9cdc3 { 'aliquot_tag': 'ALQ_5312f280', 'gdc_sample_type': 'Primary Tumor' } +C3N-03173.RNA-Seq.R1_L006.A C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 190702_UNC32-K00270_0188_BH7CLJBBXY_GTCGGAGC-GGTTATAA_S21_L006_R1_001.fastq.gz 3156533483 FASTQ R1_L006 unaligned CPTAC3 3cc111fa-a35b-4d22-9537-d26f91788b33 edae608f77cacdd7747e2b18e6d2c7c7 { 'aliquot_tag': 'ALQ_6e72db30', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03173.RNA-Seq.R1_L007.T C3N-03173 PDA RNA-Seq tumor CPT0186040010 190702_UNC32-K00270_0187_AH7FK2BBXY_AATCCGGA-CTACAGTT_S24_L007_R1_001.fastq.gz 4243130759 FASTQ R1_L007 unaligned CPTAC3 9b57c2ff-046e-4890-b297-78b781681c4c 0d60a65ba39fabbaaada54ebeb3f8ba5 { 'aliquot_tag': 'ALQ_5312f280', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03173.RNA-Seq.R2_L006.A C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 190702_UNC32-K00270_0188_BH7CLJBBXY_GTCGGAGC-GGTTATAA_S21_L006_R2_001.fastq.gz 3695447076 FASTQ R2_L006 unaligned CPTAC3 214d357b-8e8e-4fa9-ac51-e0543c1b85cb e23af47a11772f763065fe73cf7abf4c { 'aliquot_tag': 'ALQ_6e72db30', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-03173.RNA-Seq.R2_L007.T C3N-03173 PDA RNA-Seq tumor CPT0186040010 190702_UNC32-K00270_0187_AH7FK2BBXY_AATCCGGA-CTACAGTT_S24_L007_R2_001.fastq.gz 4810406574 FASTQ R2_L007 unaligned CPTAC3 5c17c0fe-363f-4d67-b655-e6113c9e375d c7b4682a9b3fb2a946d33a4b2f69c9a6 { 'aliquot_tag': 'ALQ_5312f280', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } C3N-03173.RNA-Seq.transcriptome.A.hg38 C3N-03173 PDA RNA-Seq tissue_normal CPT0186050010 fa404154-7ff0-41f6-9ce3-81412c8578b1.rna_seq.transcriptome.gdc_realn.bam 7648761470 BAM transcriptome harmonized CPTAC3 6662ebd3-6290-4136-94b4-53a6fafb4f21 e5c95cb95b1ec1621555e54dfd21a06e { 'aliquot_tag': 'ALQ_6e72db30', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03173.RNA-Seq.transcriptome.T.hg38 C3N-03173 PDA RNA-Seq tumor CPT0186040010 c489a45e-719a-4659-82e5-03dfa2cd477a.rna_seq.transcriptome.gdc_realn.bam 10998079787 BAM transcriptome harmonized CPTAC3 2c4d4b8e-7bf8-4acc-b216-6f79d5e48d60 78478613fc3a39d404e0c4549776ef29 { 'aliquot_tag': 'ALQ_5312f280', 'gdc_sample_type': 'Primary Tumor' } C3N-03173.WGS.N C3N-03173 PDA WGS blood_normal CPT0187290002 CPT0187290002.WholeGenome.RP-1303.bam 69827861271 BAM aligned CPTAC3 f915aeee-76fe-497d-b1cb-fe1ef56d99d0 f4fe4cf8dc77140f49ba8f174eacb245 { 'aliquot_tag': 'ALQ_b728cce3', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34696,9 +36986,9 @@ C3N-03173.WXS.T.hg38 C3N-03173 PDA WXS tumor CPT0186040013 73bca6e6-5f02-4756-af C3N-03180.miRNA-Seq.T C3N-03180 GBM miRNA-Seq tumor CPT0206450006 181219_UNC31-K00269_0173_BHYGJJBBXX_ATTCCT_S26_L004_R1_001.unaln.bam 223446234 BAM unaligned CPTAC3 183a90a4-4aba-4093-9b8c-6d86a2531b8c b0984982dae06887de29e7ad4d5cf96b { 'aliquot_tag': 'ALQ_eff32a22', 'gdc_sample_type': 'Primary Tumor' } C3N-03180.miRNA-Seq.T.hg38 C3N-03180 GBM miRNA-Seq tumor CPT0206450006 0ab9fc8a-85de-4243-aa5b-818673c699b2_mirnaseq_gdc_realn.bam 246204106 BAM harmonized CPTAC3 a9069373-e397-4664-ac66-483b6fddcd57 6e9684f4f5255680363d731299bb5947 { 'aliquot_tag': 'ALQ_eff32a22', 'gdc_sample_type': 'Primary Tumor' } C3N-03180.RNA-Seq.chimeric.T.hg38 C3N-03180 GBM RNA-Seq tumor CPT0206450006 37b52f8c-1c83-489b-9332-c498cb889414.rna_seq.chimeric.gdc_realn.bam 179304429 BAM chimeric harmonized CPTAC3 30ca3c79-f0b2-4356-a5a8-1a595f320174 7a1a747a6d637b26063b5590d48fca70 { 'aliquot_tag': 'ALQ_eff32a22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03180.RNA-Seq.genomic.T.hg38 C3N-03180 GBM RNA-Seq tumor CPT0206450006 37b52f8c-1c83-489b-9332-c498cb889414.rna_seq.genomic.gdc_realn.bam 7595872394 BAM genomic harmonized CPTAC3 1e8a1c86-dac0-47b1-97f5-9e3b98f8a2ac 34d179fad3c40acaeca4b931f8b99649 { 'aliquot_tag': 'ALQ_eff32a22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03180.RNA-Seq.R1_L008.T C3N-03180 GBM RNA-Seq tumor CPT0206450006 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L008_R1_001.fastq.gz 3432824481 FASTQ R1_L008 unaligned CPTAC3 94910b4a-6541-4491-af24-64b4b5209f4e 09a5e42306ffc12f21d903b8ee5b9bda { 'aliquot_tag': 'ALQ_eff32a22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03180.RNA-Seq.R2_L008.T C3N-03180 GBM RNA-Seq tumor CPT0206450006 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L008_R2_001.fastq.gz 3531880668 FASTQ R2_L008 unaligned CPTAC3 3935ae0d-87c0-4ed0-88bd-fc1e45733f11 b557382ffe9c7004f42e17d543db8154 { 'aliquot_tag': 'ALQ_eff32a22', 'gdc_sample_type': 'Primary Tumor' } +C3N-03180.RNA-Seq.genomic.T.hg38 C3N-03180 GBM RNA-Seq tumor CPT0206450006 37b52f8c-1c83-489b-9332-c498cb889414.rna_seq.genomic.gdc_realn.bam 7595872394 BAM genomic harmonized CPTAC3 d4c46bf2-296f-4d4a-9a8d-6ecb164c3cb6 34d179fad3c40acaeca4b931f8b99649 { 'aliquot_tag': 'ALQ_eff32a22', 'gdc_sample_type': 'Primary Tumor' } +C3N-03180.RNA-Seq.R1_L008.T C3N-03180 GBM RNA-Seq tumor CPT0206450006 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L008_R1_001.fastq.gz 3432824481 FASTQ R1_L008 unaligned CPTAC3 94910b4a-6541-4491-af24-64b4b5209f4e 09a5e42306ffc12f21d903b8ee5b9bda { 'aliquot_tag': 'ALQ_eff32a22', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03180.RNA-Seq.R2_L008.T C3N-03180 GBM RNA-Seq tumor CPT0206450006 181002_UNC31-K00269_0156_AHWN3HBBXX_TTAGGC_S3_L008_R2_001.fastq.gz 3531880668 FASTQ R2_L008 unaligned CPTAC3 3935ae0d-87c0-4ed0-88bd-fc1e45733f11 b557382ffe9c7004f42e17d543db8154 { 'aliquot_tag': 'ALQ_eff32a22', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-03180.RNA-Seq.transcriptome.T.hg38 C3N-03180 GBM RNA-Seq tumor CPT0206450006 37b52f8c-1c83-489b-9332-c498cb889414.rna_seq.transcriptome.gdc_realn.bam 10231904319 BAM transcriptome harmonized CPTAC3 f49d2e00-e6e0-456b-b0c1-60ad4abd5894 65d515c19a803de79c34cb9c8a51ff72 { 'aliquot_tag': 'ALQ_eff32a22', 'gdc_sample_type': 'Primary Tumor' } C3N-03180.WGS.N C3N-03180 GBM WGS blood_normal CPT0206500002 CPT0206500002.WholeGenome.RP-1303.bam 56557163572 BAM aligned CPTAC3 2a46c639-a598-441f-a78c-1b8b7226f35a f7c601cc05c05e36e029665f90d6df70 { 'aliquot_tag': 'ALQ_eb22b2ee', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03180.WGS.N.hg38 C3N-03180 GBM WGS blood_normal CPT0206500002 edf472d8-84a9-455a-86a1-2b6c5c087389_wgs_gdc_realn.bam 83598139567 BAM harmonized CPTAC3 dd46c594-18fb-4f74-8dc4-89ed1ebede3e 7e9d17ef52d45ddc17ecabf63f496ba7 { 'aliquot_tag': 'ALQ_eb22b2ee', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34713,9 +37003,9 @@ C3N-03182.MethArray.Red.T C3N-03182 GBM Methylation Array tumor CPT0206560009 20 C3N-03182.miRNA-Seq.T C3N-03182 GBM miRNA-Seq tumor CPT0206560006 181219_UNC31-K00269_0173_BHYGJJBBXX_CAAAAG_S27_L004_R1_001.unaln.bam 175667733 BAM unaligned CPTAC3 b0dd487d-f40c-4af4-aa81-72f5c711b72f 6627f236d5d8354c0c11efec15ec251f { 'aliquot_tag': 'ALQ_630f8357', 'gdc_sample_type': 'Primary Tumor' } C3N-03182.miRNA-Seq.T.hg38 C3N-03182 GBM miRNA-Seq tumor CPT0206560006 dfe44706-7cfd-4717-b360-6264b2dd71e9_mirnaseq_gdc_realn.bam 196370648 BAM harmonized CPTAC3 c913ec73-04a4-4dc9-81d3-b63e67250dfc e891bcee4c8a09f976797ca6da829934 { 'aliquot_tag': 'ALQ_630f8357', 'gdc_sample_type': 'Primary Tumor' } C3N-03182.RNA-Seq.chimeric.T.hg38 C3N-03182 GBM RNA-Seq tumor CPT0206560006 6baf3bf3-ff4d-44be-8e17-4357aa0c7649.rna_seq.chimeric.gdc_realn.bam 125819892 BAM chimeric harmonized CPTAC3 9962c0bf-62b6-4926-a733-c2e790acfc74 5a69760e998e5b17fde74aaac1ad4a71 { 'aliquot_tag': 'ALQ_630f8357', 'gdc_sample_type': 'Primary Tumor' } -C3N-03182.RNA-Seq.genomic.T.hg38 C3N-03182 GBM RNA-Seq tumor CPT0206560006 6baf3bf3-ff4d-44be-8e17-4357aa0c7649.rna_seq.genomic.gdc_realn.bam 7988922287 BAM genomic harmonized CPTAC3 4774fd92-1ac7-40f0-aaf6-7242c7cb736c d182fe2c241a973eaaa5d5c9b8e68ab0 { 'aliquot_tag': 'ALQ_630f8357', 'gdc_sample_type': 'Primary Tumor' } -C3N-03182.RNA-Seq.R1_L008.T C3N-03182 GBM RNA-Seq tumor CPT0206560006 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L008_R1_001.fastq.gz 3741947645 FASTQ R1_L008 unaligned CPTAC3 16b89fae-b4cd-46f4-b073-7f97adf79742 54a76510ea4833768a07e1c6127416d1 { 'aliquot_tag': 'ALQ_630f8357', 'gdc_sample_type': 'Primary Tumor' } -C3N-03182.RNA-Seq.R2_L008.T C3N-03182 GBM RNA-Seq tumor CPT0206560006 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L008_R2_001.fastq.gz 3772103440 FASTQ R2_L008 unaligned CPTAC3 aa16efac-5164-4f11-986e-76fbdd660b5e 6dc99ddbb8aa68306fd55ee5ff7b5c1b { 'aliquot_tag': 'ALQ_630f8357', 'gdc_sample_type': 'Primary Tumor' } +C3N-03182.RNA-Seq.genomic.T.hg38 C3N-03182 GBM RNA-Seq tumor CPT0206560006 6baf3bf3-ff4d-44be-8e17-4357aa0c7649.rna_seq.genomic.gdc_realn.bam 7988922287 BAM genomic harmonized CPTAC3 5860fc27-8c81-40a4-a8e6-a49ae231b762 d182fe2c241a973eaaa5d5c9b8e68ab0 { 'aliquot_tag': 'ALQ_630f8357', 'gdc_sample_type': 'Primary Tumor' } +C3N-03182.RNA-Seq.R1_L008.T C3N-03182 GBM RNA-Seq tumor CPT0206560006 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L008_R1_001.fastq.gz 3741947645 FASTQ R1_L008 unaligned CPTAC3 16b89fae-b4cd-46f4-b073-7f97adf79742 54a76510ea4833768a07e1c6127416d1 { 'aliquot_tag': 'ALQ_630f8357', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03182.RNA-Seq.R2_L008.T C3N-03182 GBM RNA-Seq tumor CPT0206560006 181002_UNC31-K00269_0156_AHWN3HBBXX_TGACCA_S4_L008_R2_001.fastq.gz 3772103440 FASTQ R2_L008 unaligned CPTAC3 aa16efac-5164-4f11-986e-76fbdd660b5e 6dc99ddbb8aa68306fd55ee5ff7b5c1b { 'aliquot_tag': 'ALQ_630f8357', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-03182.RNA-Seq.transcriptome.T.hg38 C3N-03182 GBM RNA-Seq tumor CPT0206560006 6baf3bf3-ff4d-44be-8e17-4357aa0c7649.rna_seq.transcriptome.gdc_realn.bam 10636329658 BAM transcriptome harmonized CPTAC3 418666ec-9248-43f7-a804-a290e2a0a6c7 824c5ca7a008f7b73471a7452c989da1 { 'aliquot_tag': 'ALQ_630f8357', 'gdc_sample_type': 'Primary Tumor' } C3N-03182.WGS.N C3N-03182 GBM WGS blood_normal CPT0206610002 CPT0206610002.WholeGenome.RP-1303.bam 61463466398 BAM aligned CPTAC3 40083d23-e053-4774-a150-cd1bac2e5983 289c2bce3b83f52f8770cfa206022c17 { 'aliquot_tag': 'ALQ_50d6e9f0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03182.WGS.N.hg38 C3N-03182 GBM WGS blood_normal CPT0206610002 169a9157-ea3d-4d12-896d-093c39862823_wgs_gdc_realn.bam 91728345679 BAM harmonized CPTAC3 2ad31616-457b-466a-8225-106e6be6b948 52e6a93631360987edd87e0f125a7924 { 'aliquot_tag': 'ALQ_50d6e9f0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34731,8 +37021,8 @@ C3N-03183.miRNA-Seq.T C3N-03183 GBM miRNA-Seq tumor CPT0206670013 190228_UNC32-K C3N-03183.miRNA-Seq.T.hg38 C3N-03183 GBM miRNA-Seq tumor CPT0206670013 e9bbd3e8-30df-47d1-9745-d97f68416d1d_mirnaseq_gdc_realn.bam 343984027 BAM harmonized CPTAC3 8d46208b-8901-436d-96d1-395c2d0fe5c9 5e8bfb99562a33251b0d41c025639f72 { 'aliquot_tag': 'ALQ_b18a1d87', 'gdc_sample_type': 'Primary Tumor' } C3N-03183.RNA-Seq.chimeric.T.hg38 C3N-03183 GBM RNA-Seq tumor CPT0206670013 3c9d8427-5b18-4743-b004-93c6a128f988.rna_seq.chimeric.gdc_realn.bam 46886078 BAM chimeric harmonized CPTAC3 a2db7931-93ac-41bf-a547-c39a9e1ca04c 4e3b501c67c8ab988da244f3de4f634b { 'aliquot_tag': 'ALQ_b18a1d87', 'gdc_sample_type': 'Primary Tumor' } C3N-03183.RNA-Seq.genomic.T.hg38 C3N-03183 GBM RNA-Seq tumor CPT0206670013 3c9d8427-5b18-4743-b004-93c6a128f988.rna_seq.genomic.gdc_realn.bam 9112682666 BAM genomic harmonized CPTAC3 7630181b-15d5-4b6d-875e-a063171dd69d be982fec38868bdc1f6f3b67096edbd9 { 'aliquot_tag': 'ALQ_b18a1d87', 'gdc_sample_type': 'Primary Tumor' } -C3N-03183.RNA-Seq.R1_L006.T C3N-03183 GBM RNA-Seq tumor CPT0206670013 180918_UNC31-K00269_0152_AHWNJTBBXX_TAGCTT_S6_L006_R1_001.fastq.gz 4413991517 FASTQ R1_L006 unaligned CPTAC3 f18a4ee8-66b3-4796-9788-794458cfee84 e36de1c76723a10a8df57b2d0da6946d { 'aliquot_tag': 'ALQ_b18a1d87', 'gdc_sample_type': 'Primary Tumor' } -C3N-03183.RNA-Seq.R2_L006.T C3N-03183 GBM RNA-Seq tumor CPT0206670013 180918_UNC31-K00269_0152_AHWNJTBBXX_TAGCTT_S6_L006_R2_001.fastq.gz 4612215164 FASTQ R2_L006 unaligned CPTAC3 e28d3399-6017-40b8-848e-83f9a99aceb1 43324c2c01fa2b3bec628d5bbc09212e { 'aliquot_tag': 'ALQ_b18a1d87', 'gdc_sample_type': 'Primary Tumor' } +C3N-03183.RNA-Seq.R1_L006.T C3N-03183 GBM RNA-Seq tumor CPT0206670013 180918_UNC31-K00269_0152_AHWNJTBBXX_TAGCTT_S6_L006_R1_001.fastq.gz 4413991517 FASTQ R1_L006 unaligned CPTAC3 f18a4ee8-66b3-4796-9788-794458cfee84 e36de1c76723a10a8df57b2d0da6946d { 'aliquot_tag': 'ALQ_b18a1d87', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03183.RNA-Seq.R2_L006.T C3N-03183 GBM RNA-Seq tumor CPT0206670013 180918_UNC31-K00269_0152_AHWNJTBBXX_TAGCTT_S6_L006_R2_001.fastq.gz 4612215164 FASTQ R2_L006 unaligned CPTAC3 e28d3399-6017-40b8-848e-83f9a99aceb1 43324c2c01fa2b3bec628d5bbc09212e { 'aliquot_tag': 'ALQ_b18a1d87', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-03183.RNA-Seq.transcriptome.T.hg38 C3N-03183 GBM RNA-Seq tumor CPT0206670013 3c9d8427-5b18-4743-b004-93c6a128f988.rna_seq.transcriptome.gdc_realn.bam 12247439400 BAM transcriptome harmonized CPTAC3 ce3ee5e9-7a8f-4113-995d-8c8af5d892ae 6c9649a442803fdc64254e8bc9392243 { 'aliquot_tag': 'ALQ_b18a1d87', 'gdc_sample_type': 'Primary Tumor' } C3N-03183.WGS.N C3N-03183 GBM WGS blood_normal CPT0206720002 CPT0206720002.WholeGenome.RP-1303.bam 71629700578 BAM aligned CPTAC3 024a0a62-fed0-416e-8de9-a6631482c173 1f8dcb400f28e3fc923017a15e3726ca { 'aliquot_tag': 'ALQ_dc2a4085', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03183.WGS.N.hg38 C3N-03183 GBM WGS blood_normal CPT0206720002 294ad51c-8885-4fd9-9437-80f6d8f8c0d8_wgs_gdc_realn.bam 109199626484 BAM harmonized CPTAC3 91e318ce-cf46-4d6e-9e6a-dcf893614ca8 d7b378e5e307126d5ee6e2309b43411e { 'aliquot_tag': 'ALQ_dc2a4085', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34747,12 +37037,12 @@ C3N-03184.MethArray.Red.T C3N-03184 GBM Methylation Array tumor CPT0206780009 20 C3N-03184.miRNA-Seq.T C3N-03184 GBM miRNA-Seq tumor CPT0206780006 181219_UNC31-K00269_0173_BHYGJJBBXX_CAACTA_S28_L004_R1_001.unaln.bam 260920979 BAM unaligned CPTAC3 8104e91a-f2fa-49d7-88df-9cf463364904 4cff8b52d7d6f10b6677f9e7a6943ee5 { 'aliquot_tag': 'ALQ_91f79c3d', 'gdc_sample_type': 'Primary Tumor' } C3N-03184.miRNA-Seq.T.hg38 C3N-03184 GBM miRNA-Seq tumor CPT0206780006 573253ad-5a46-4764-bf1a-608401b1b498_mirnaseq_gdc_realn.bam 300169458 BAM harmonized CPTAC3 bf19717c-4904-4359-87c1-283f469eb03f ad5778cd002b0925fca58b56b7160263 { 'aliquot_tag': 'ALQ_91f79c3d', 'gdc_sample_type': 'Primary Tumor' } C3N-03184.RNA-Seq.chimeric.T.hg38 C3N-03184 GBM RNA-Seq tumor CPT0206780006 77ee6d80-f2f8-4fc1-ad07-f7446e46764d.rna_seq.chimeric.gdc_realn.bam 291038627 BAM chimeric harmonized CPTAC3 df166173-5790-49c7-99ef-72458498dca8 2bcb7510ec953e551c1c840d0548b7f4 { 'aliquot_tag': 'ALQ_91f79c3d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03184.RNA-Seq.genomic.T.hg38 C3N-03184 GBM RNA-Seq tumor CPT0206780006 77ee6d80-f2f8-4fc1-ad07-f7446e46764d.rna_seq.genomic.gdc_realn.bam 9048442267 BAM genomic harmonized CPTAC3 c31fb093-6541-4dc9-8454-72ed420059ae 561211b320d2d3426d340e75de6e195a { 'aliquot_tag': 'ALQ_91f79c3d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03184.RNA-Seq.R1_L001.T C3N-03184 GBM RNA-Seq tumor CPT0206780006 181207_UNC32-K00270_0136_AH2N7LBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4144799085 FASTQ R1_L001 unaligned CPTAC3 5c5ae7fc-2183-47f7-af45-9c07dc35bae7 19330c2f638500c3ac10d9a304a738b7 { 'aliquot_tag': 'ALQ_91f79c3d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03184.RNA-Seq.R2_L001.T C3N-03184 GBM RNA-Seq tumor CPT0206780006 181207_UNC32-K00270_0136_AH2N7LBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 4535735535 FASTQ R2_L001 unaligned CPTAC3 ae17a1e8-ee58-47dd-987c-ae79b11f38e2 3cbe3f84148ac2902e18719b60225ebb { 'aliquot_tag': 'ALQ_91f79c3d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03184.RNA-Seq.genomic.T.hg38 C3N-03184 GBM RNA-Seq tumor CPT0206780006 77ee6d80-f2f8-4fc1-ad07-f7446e46764d.rna_seq.genomic.gdc_realn.bam 9048442267 BAM genomic harmonized CPTAC3 06d76886-ad9f-472f-8f8a-b707952ab5f6 561211b320d2d3426d340e75de6e195a { 'aliquot_tag': 'ALQ_91f79c3d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03184.RNA-Seq.R1_L001.T C3N-03184 GBM RNA-Seq tumor CPT0206780006 181207_UNC32-K00270_0136_AH2N7LBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4144799085 FASTQ R1_L001 unaligned CPTAC3 5c5ae7fc-2183-47f7-af45-9c07dc35bae7 19330c2f638500c3ac10d9a304a738b7 { 'aliquot_tag': 'ALQ_91f79c3d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03184.RNA-Seq.R2_L001.T C3N-03184 GBM RNA-Seq tumor CPT0206780006 181207_UNC32-K00270_0136_AH2N7LBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 4535735535 FASTQ R2_L001 unaligned CPTAC3 ae17a1e8-ee58-47dd-987c-ae79b11f38e2 3cbe3f84148ac2902e18719b60225ebb { 'aliquot_tag': 'ALQ_91f79c3d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-03184.RNA-Seq.transcriptome.T.hg38 C3N-03184 GBM RNA-Seq tumor CPT0206780006 77ee6d80-f2f8-4fc1-ad07-f7446e46764d.rna_seq.transcriptome.gdc_realn.bam 10497646301 BAM transcriptome harmonized CPTAC3 b7566257-b4e4-400f-ab8d-beb68ea1385d 9181e9efaf055f6e83ffdc14d3f50508 { 'aliquot_tag': 'ALQ_91f79c3d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03184.scRNA-Seq.R1_L004.T C3N-03184 GBM scRNA-Seq tumor CPT0206770002 20191030_WUSTL_CPT0206770002_CCTAGACC-ATCTCTGT-TAGCTCTA-GGAGAGAG_S2_L004_R1_001.fastq.gz 10712601524 FASTQ R1_L004 unaligned CPTAC3 8f1fa942-150a-4023-b33a-ae9a9ea3ef79 99689b02ff750265f06090c65a96738d { 'aliquot_tag': 'ALQ_14cacff5', 'gdc_sample_type': 'Primary Tumor' } -C3N-03184.scRNA-Seq.R2_L004.T C3N-03184 GBM scRNA-Seq tumor CPT0206770002 20191030_WUSTL_CPT0206770002_CCTAGACC-ATCTCTGT-TAGCTCTA-GGAGAGAG_S2_L004_R2_001.fastq.gz 24360054740 FASTQ R2_L004 unaligned CPTAC3 fe6efe38-2f32-4fef-9ce3-6cd4e9de3744 ba4224ec64bcbcd50ce56ac2871bcff2 { 'aliquot_tag': 'ALQ_14cacff5', 'gdc_sample_type': 'Primary Tumor' } +C3N-03184.scRNA-Seq.R1_L004.T C3N-03184 GBM scRNA-Seq tumor CPT0206770002 20191030_WUSTL_CPT0206770002_CCTAGACC-ATCTCTGT-TAGCTCTA-GGAGAGAG_S2_L004_R1_001.fastq.gz 10712601524 FASTQ R1_L004 unaligned CPTAC3 8f1fa942-150a-4023-b33a-ae9a9ea3ef79 99689b02ff750265f06090c65a96738d { 'aliquot_tag': 'ALQ_14cacff5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03184.scRNA-Seq.R2_L004.T C3N-03184 GBM scRNA-Seq tumor CPT0206770002 20191030_WUSTL_CPT0206770002_CCTAGACC-ATCTCTGT-TAGCTCTA-GGAGAGAG_S2_L004_R2_001.fastq.gz 24360054740 FASTQ R2_L004 unaligned CPTAC3 fe6efe38-2f32-4fef-9ce3-6cd4e9de3744 ba4224ec64bcbcd50ce56ac2871bcff2 { 'aliquot_tag': 'ALQ_14cacff5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-03184.scRNA-Seq.T.hg38 C3N-03184 GBM scRNA-Seq tumor CPT0206770002 possorted_genome_bam.bam 27748877601 BAM harmonized CPTAC3 81af3f7d-1e43-47cb-88f9-07fdb39b7cd3 6fc463f522df04b5194fd0fb91c8b836 { 'aliquot_tag': 'ALQ_14cacff5', 'gdc_sample_type': 'Primary Tumor' } C3N-03184.WGS.N C3N-03184 GBM WGS blood_normal CPT0206830002 CPT0206830002.WholeGenome.RP-1303.bam 60404443966 BAM aligned CPTAC3 6901c856-f491-4b7d-84af-604abea50477 57112c05adb29bb0b38134929f1fe591 { 'aliquot_tag': 'ALQ_101cdbe0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03184.WGS.N.hg38 C3N-03184 GBM WGS blood_normal CPT0206830002 e5a7f2ee-15f8-4c5b-8ea8-c0f57ab8f65d_wgs_gdc_realn.bam 90129244059 BAM harmonized CPTAC3 6555a211-793e-44aa-8a93-5e82c66f40b4 bc146fd46f8af5a813c0cddeeb674f04 { 'aliquot_tag': 'ALQ_101cdbe0', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34767,12 +37057,12 @@ C3N-03186.MethArray.Red.T C3N-03186 GBM Methylation Array tumor CPT0206880009 20 C3N-03186.miRNA-Seq.T C3N-03186 GBM miRNA-Seq tumor CPT0206880006 181219_UNC31-K00269_0173_BHYGJJBBXX_CACCGG_S29_L004_R1_001.unaln.bam 259425117 BAM unaligned CPTAC3 577d0ce4-014e-4129-85ad-5a794eb4bf8c f04b95605c64621b2669b77935f8d74e { 'aliquot_tag': 'ALQ_60a12ee8', 'gdc_sample_type': 'Primary Tumor' } C3N-03186.miRNA-Seq.T.hg38 C3N-03186 GBM miRNA-Seq tumor CPT0206880006 29864ea3-196b-4701-89d5-7874215d93c3_mirnaseq_gdc_realn.bam 297013313 BAM harmonized CPTAC3 ddf8725a-b232-4d1a-90f7-13916203189b b757637a75fa814a6fbc07f760cd1551 { 'aliquot_tag': 'ALQ_60a12ee8', 'gdc_sample_type': 'Primary Tumor' } C3N-03186.RNA-Seq.chimeric.T.hg38 C3N-03186 GBM RNA-Seq tumor CPT0206880006 25121daf-8087-42a4-a445-9fe2557431e0.rna_seq.chimeric.gdc_realn.bam 224449155 BAM chimeric harmonized CPTAC3 aed12378-e82a-4e43-be20-4aee2ee534e4 513c2244a9728b19f527f072d26566d6 { 'aliquot_tag': 'ALQ_60a12ee8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03186.RNA-Seq.genomic.T.hg38 C3N-03186 GBM RNA-Seq tumor CPT0206880006 25121daf-8087-42a4-a445-9fe2557431e0.rna_seq.genomic.gdc_realn.bam 8808409337 BAM genomic harmonized CPTAC3 87c75aa4-0688-4ec8-b473-d2d7b807c001 26380014d73c0adb44d71fa2232b976c { 'aliquot_tag': 'ALQ_60a12ee8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03186.RNA-Seq.R1_L001.T C3N-03186 GBM RNA-Seq tumor CPT0206880006 181207_UNC32-K00270_0136_AH2N7LBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 3759023432 FASTQ R1_L001 unaligned CPTAC3 87bab1d0-10a6-491d-8199-c5edd2946f2b 5f194eec615c5ca976d3a64bd0106c35 { 'aliquot_tag': 'ALQ_60a12ee8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03186.RNA-Seq.R2_L001.T C3N-03186 GBM RNA-Seq tumor CPT0206880006 181207_UNC32-K00270_0136_AH2N7LBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 4161674954 FASTQ R2_L001 unaligned CPTAC3 9d47e501-79d8-4891-9c5c-8fb876837447 7f03c4090cfd22a7bee82458fecd6c4c { 'aliquot_tag': 'ALQ_60a12ee8', 'gdc_sample_type': 'Primary Tumor' } +C3N-03186.RNA-Seq.genomic.T.hg38 C3N-03186 GBM RNA-Seq tumor CPT0206880006 25121daf-8087-42a4-a445-9fe2557431e0.rna_seq.genomic.gdc_realn.bam 8808409337 BAM genomic harmonized CPTAC3 1ea8c9ee-6bcf-4253-b1ee-0e2c9e265b88 26380014d73c0adb44d71fa2232b976c { 'aliquot_tag': 'ALQ_60a12ee8', 'gdc_sample_type': 'Primary Tumor' } +C3N-03186.RNA-Seq.R1_L001.T C3N-03186 GBM RNA-Seq tumor CPT0206880006 181207_UNC32-K00270_0136_AH2N7LBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 3759023432 FASTQ R1_L001 unaligned CPTAC3 87bab1d0-10a6-491d-8199-c5edd2946f2b 5f194eec615c5ca976d3a64bd0106c35 { 'aliquot_tag': 'ALQ_60a12ee8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03186.RNA-Seq.R2_L001.T C3N-03186 GBM RNA-Seq tumor CPT0206880006 181207_UNC32-K00270_0136_AH2N7LBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 4161674954 FASTQ R2_L001 unaligned CPTAC3 9d47e501-79d8-4891-9c5c-8fb876837447 7f03c4090cfd22a7bee82458fecd6c4c { 'aliquot_tag': 'ALQ_60a12ee8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-03186.RNA-Seq.transcriptome.T.hg38 C3N-03186 GBM RNA-Seq tumor CPT0206880006 25121daf-8087-42a4-a445-9fe2557431e0.rna_seq.transcriptome.gdc_realn.bam 10416378361 BAM transcriptome harmonized CPTAC3 a4de6238-89a7-4daa-bb0c-179f2d64ab53 f7c85c4bf1506fca693386a96281fe92 { 'aliquot_tag': 'ALQ_60a12ee8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03186.scRNA-Seq.R1_L001.T C3N-03186 GBM scRNA-Seq tumor CPT0206880004 20200622_WUSTL_CPT0206880004_TCTCAGTG-GAGACTAT-CGCTTAGC-ATAGGCCA_S4_L001_R1_001.fastq.gz 10703766166 FASTQ R1_L001 unaligned CPTAC3 9df1cb87-32b3-4477-982b-9af04c3f4ccd 047d7739b6a6ebeface55d18c487b02a { 'aliquot_tag': 'ALQ_8eaf4fc4', 'gdc_sample_type': 'Primary Tumor' } -C3N-03186.scRNA-Seq.R2_L001.T C3N-03186 GBM scRNA-Seq tumor CPT0206880004 20200622_WUSTL_CPT0206880004_TCTCAGTG-GAGACTAT-CGCTTAGC-ATAGGCCA_S4_L001_R2_001.fastq.gz 24638505648 FASTQ R2_L001 unaligned CPTAC3 25dd41d3-2be1-46c4-9630-443e70d3fbd3 fd3d03b1ea01950154acb863c658a6d4 { 'aliquot_tag': 'ALQ_8eaf4fc4', 'gdc_sample_type': 'Primary Tumor' } +C3N-03186.scRNA-Seq.R1_L001.T C3N-03186 GBM scRNA-Seq tumor CPT0206880004 20200622_WUSTL_CPT0206880004_TCTCAGTG-GAGACTAT-CGCTTAGC-ATAGGCCA_S4_L001_R1_001.fastq.gz 10703766166 FASTQ R1_L001 unaligned CPTAC3 9df1cb87-32b3-4477-982b-9af04c3f4ccd 047d7739b6a6ebeface55d18c487b02a { 'aliquot_tag': 'ALQ_8eaf4fc4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03186.scRNA-Seq.R2_L001.T C3N-03186 GBM scRNA-Seq tumor CPT0206880004 20200622_WUSTL_CPT0206880004_TCTCAGTG-GAGACTAT-CGCTTAGC-ATAGGCCA_S4_L001_R2_001.fastq.gz 24638505648 FASTQ R2_L001 unaligned CPTAC3 25dd41d3-2be1-46c4-9630-443e70d3fbd3 fd3d03b1ea01950154acb863c658a6d4 { 'aliquot_tag': 'ALQ_8eaf4fc4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-03186.scRNA-Seq.T.hg38 C3N-03186 GBM scRNA-Seq tumor CPT0206880004 possorted_genome_bam.bam 24794207809 BAM harmonized CPTAC3 cb7f2b9f-026c-474c-8597-d255f446da18 a8d615564506880e1594a12ed51befc1 { 'aliquot_tag': 'ALQ_8eaf4fc4', 'gdc_sample_type': 'Primary Tumor' } C3N-03186.WGS.N C3N-03186 GBM WGS blood_normal CPT0206940002 CPT0206940002.WholeGenome.RP-1303.bam 65040645125 BAM aligned CPTAC3 9f5d33fa-acdf-44fe-b14f-ece6991eb1bf 155895ce934cf3f649541e1a26eba8d7 { 'aliquot_tag': 'ALQ_6960d455', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03186.WGS.N.hg38 C3N-03186 GBM WGS blood_normal CPT0206940002 6e67dba7-0c71-4c45-9d0b-d93b5a185421_wgs_gdc_realn.bam 97634516512 BAM harmonized CPTAC3 b30947ce-f48f-4950-a79b-c14d5b5f8260 528850f8287a1fb0c30349d3bc5ef967 { 'aliquot_tag': 'ALQ_6960d455', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34787,12 +37077,12 @@ C3N-03188.MethArray.Red.T C3N-03188 GBM Methylation Array tumor CPT0207030009 20 C3N-03188.miRNA-Seq.T C3N-03188 GBM miRNA-Seq tumor CPT0207030013 190228_UNC32-K00270_0151_AHYLY3BBXX_CCGTCC_S16_L008_R1_001.unaln.bam 251151360 BAM unaligned CPTAC3 d37842f6-bd70-4a7a-b673-e64fa1f236d9 2d071b7dcbfe9f5b390386c354176813 { 'aliquot_tag': 'ALQ_342453ee', 'gdc_sample_type': 'Primary Tumor' } C3N-03188.miRNA-Seq.T.hg38 C3N-03188 GBM miRNA-Seq tumor CPT0207030013 797da332-0a38-4ba6-80be-e5abce2060e7_mirnaseq_gdc_realn.bam 282463571 BAM harmonized CPTAC3 2a3d62cf-320b-43d6-ac42-8a52f9e62786 886f0f764ed74fe6f5ca03748c361b14 { 'aliquot_tag': 'ALQ_342453ee', 'gdc_sample_type': 'Primary Tumor' } C3N-03188.RNA-Seq.chimeric.T.hg38 C3N-03188 GBM RNA-Seq tumor CPT0207030013 bbf9ac2f-d194-4299-ba75-53a84cbe4950.rna_seq.chimeric.gdc_realn.bam 41839644 BAM chimeric harmonized CPTAC3 62bb2cc9-2a28-4b7d-b94f-73c162f176e9 e2aed35c686814198739f6f54b0e6c27 { 'aliquot_tag': 'ALQ_342453ee', 'gdc_sample_type': 'Primary Tumor' } -C3N-03188.RNA-Seq.genomic.T.hg38 C3N-03188 GBM RNA-Seq tumor CPT0207030013 bbf9ac2f-d194-4299-ba75-53a84cbe4950.rna_seq.genomic.gdc_realn.bam 8040292847 BAM genomic harmonized CPTAC3 e5539fef-b4cc-451a-b54b-a84379c2ff91 1c52eba9955332dfd8317dec28c818aa { 'aliquot_tag': 'ALQ_342453ee', 'gdc_sample_type': 'Primary Tumor' } -C3N-03188.RNA-Seq.R1_L005.T C3N-03188 GBM RNA-Seq tumor CPT0207030013 180918_UNC31-K00269_0152_AHWNJTBBXX_CAGATC_S1_L005_R1_001.fastq.gz 3834393988 FASTQ R1_L005 unaligned CPTAC3 76ca9742-918c-4db7-ac65-e842a937121e 58246b1060892a74edbe26414d1c3db0 { 'aliquot_tag': 'ALQ_342453ee', 'gdc_sample_type': 'Primary Tumor' } -C3N-03188.RNA-Seq.R2_L005.T C3N-03188 GBM RNA-Seq tumor CPT0207030013 180918_UNC31-K00269_0152_AHWNJTBBXX_CAGATC_S1_L005_R2_001.fastq.gz 3998796827 FASTQ R2_L005 unaligned CPTAC3 00da971e-c069-4aaf-a9b5-80a313d7b0bf 927cd31201275b9bc1050ebeed63e981 { 'aliquot_tag': 'ALQ_342453ee', 'gdc_sample_type': 'Primary Tumor' } +C3N-03188.RNA-Seq.genomic.T.hg38 C3N-03188 GBM RNA-Seq tumor CPT0207030013 bbf9ac2f-d194-4299-ba75-53a84cbe4950.rna_seq.genomic.gdc_realn.bam 8040292847 BAM genomic harmonized CPTAC3 dd2295a7-1762-4ec2-a84c-5ad4653f64aa 1c52eba9955332dfd8317dec28c818aa { 'aliquot_tag': 'ALQ_342453ee', 'gdc_sample_type': 'Primary Tumor' } +C3N-03188.RNA-Seq.R1_L005.T C3N-03188 GBM RNA-Seq tumor CPT0207030013 180918_UNC31-K00269_0152_AHWNJTBBXX_CAGATC_S1_L005_R1_001.fastq.gz 3834393988 FASTQ R1_L005 unaligned CPTAC3 76ca9742-918c-4db7-ac65-e842a937121e 58246b1060892a74edbe26414d1c3db0 { 'aliquot_tag': 'ALQ_342453ee', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03188.RNA-Seq.R2_L005.T C3N-03188 GBM RNA-Seq tumor CPT0207030013 180918_UNC31-K00269_0152_AHWNJTBBXX_CAGATC_S1_L005_R2_001.fastq.gz 3998796827 FASTQ R2_L005 unaligned CPTAC3 00da971e-c069-4aaf-a9b5-80a313d7b0bf 927cd31201275b9bc1050ebeed63e981 { 'aliquot_tag': 'ALQ_342453ee', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-03188.RNA-Seq.transcriptome.T.hg38 C3N-03188 GBM RNA-Seq tumor CPT0207030013 bbf9ac2f-d194-4299-ba75-53a84cbe4950.rna_seq.transcriptome.gdc_realn.bam 10378849587 BAM transcriptome harmonized CPTAC3 f2470f17-e00c-4376-adfc-9b2a59d8ef08 5f98711717fed3307f1f8efabef54d57 { 'aliquot_tag': 'ALQ_342453ee', 'gdc_sample_type': 'Primary Tumor' } -C3N-03188.scRNA-Seq.R1_L003.T C3N-03188 GBM scRNA-Seq tumor CPT0207030018 20191113_WUSTL_CPT0207030018_CTAGGTGA-TCGTTCAG-AGCCAATT-GATACGCC_S4_L003_R1_001.fastq.gz 13652430515 FASTQ R1_L003 unaligned CPTAC3 50bf9d3e-e44e-43e2-ac84-82d515902fff d8907a5af8b8102c9c7d7c663f4c3d2d { 'aliquot_tag': 'ALQ_a3f68a66', 'gdc_sample_type': 'Primary Tumor' } -C3N-03188.scRNA-Seq.R2_L003.T C3N-03188 GBM scRNA-Seq tumor CPT0207030018 20191113_WUSTL_CPT0207030018_CTAGGTGA-TCGTTCAG-AGCCAATT-GATACGCC_S4_L003_R2_001.fastq.gz 33711334298 FASTQ R2_L003 unaligned CPTAC3 4839997b-24aa-4d29-939a-7bf9c2cb44c6 ac48fd16a0effaab4ea46ad0fc5e0020 { 'aliquot_tag': 'ALQ_a3f68a66', 'gdc_sample_type': 'Primary Tumor' } +C3N-03188.scRNA-Seq.R1_L003.T C3N-03188 GBM scRNA-Seq tumor CPT0207030018 20191113_WUSTL_CPT0207030018_CTAGGTGA-TCGTTCAG-AGCCAATT-GATACGCC_S4_L003_R1_001.fastq.gz 13652430515 FASTQ R1_L003 unaligned CPTAC3 50bf9d3e-e44e-43e2-ac84-82d515902fff d8907a5af8b8102c9c7d7c663f4c3d2d { 'aliquot_tag': 'ALQ_a3f68a66', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03188.scRNA-Seq.R2_L003.T C3N-03188 GBM scRNA-Seq tumor CPT0207030018 20191113_WUSTL_CPT0207030018_CTAGGTGA-TCGTTCAG-AGCCAATT-GATACGCC_S4_L003_R2_001.fastq.gz 33711334298 FASTQ R2_L003 unaligned CPTAC3 4839997b-24aa-4d29-939a-7bf9c2cb44c6 ac48fd16a0effaab4ea46ad0fc5e0020 { 'aliquot_tag': 'ALQ_a3f68a66', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-03188.scRNA-Seq.T.hg38 C3N-03188 GBM scRNA-Seq tumor CPT0207030018 possorted_genome_bam.bam 40023051443 BAM harmonized CPTAC3 a06d7756-5df6-475c-89bd-bd1dd1555104 c23494e630462c2d3fd9e74451e4b181 { 'aliquot_tag': 'ALQ_a3f68a66', 'gdc_sample_type': 'Primary Tumor' } C3N-03188.WGS.N C3N-03188 GBM WGS blood_normal CPT0207080002 CPT0207080002.WholeGenome.RP-1303.bam 53507871721 BAM aligned CPTAC3 cf3b8ee2-a68e-4b14-a0ef-5a49db68a16d 501732d96e90137806e96abd2132ee91 { 'aliquot_tag': 'ALQ_2de86328', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03188.WGS.N.hg38 C3N-03188 GBM WGS blood_normal CPT0207080002 d018b972-f90c-490c-a9f4-da37c18224e0_wgs_gdc_realn.bam 79411908145 BAM harmonized CPTAC3 b735008d-191e-43a9-9185-e6385b53018c cdc78e6518e4c7403b05d8954beb71c2 { 'aliquot_tag': 'ALQ_2de86328', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34807,9 +37097,9 @@ C3N-03190.MethArray.Red.T C3N-03190 PDA Methylation Array tumor CPT0236560007 20 C3N-03190.miRNA-Seq.T C3N-03190 PDA miRNA-Seq tumor CPT0236560010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGAAG_S23_L004_R1_001.unaln.bam 192681943 BAM unaligned CPTAC3 8b60b59b-8718-4e7f-9834-3ced073cc7b1 9ed5f9e83f5e71917b47410250e1a633 { 'aliquot_tag': 'ALQ_1df810c0', 'gdc_sample_type': 'Primary Tumor' } C3N-03190.miRNA-Seq.T.hg38 C3N-03190 PDA miRNA-Seq tumor CPT0236560010 1dc57242-3126-4af2-90e6-b033762c408a_mirnaseq_gdc_realn.bam 218002181 BAM harmonized CPTAC3 204b0607-bff2-413d-8541-02f7e55fbbff 678884d54befc32cfb34792fcb50f298 { 'aliquot_tag': 'ALQ_1df810c0', 'gdc_sample_type': 'Primary Tumor' } C3N-03190.RNA-Seq.chimeric.T.hg38 C3N-03190 PDA RNA-Seq tumor CPT0236560010 a715622e-7524-4c9f-869b-e3e047eb337e.rna_seq.chimeric.gdc_realn.bam 35137200 BAM chimeric harmonized CPTAC3 33a84489-ac22-4cc6-832b-c47b885117f5 d33bdba46cbb23733fad5f59919e381d { 'aliquot_tag': 'ALQ_1df810c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03190.RNA-Seq.genomic.T.hg38 C3N-03190 PDA RNA-Seq tumor CPT0236560010 a715622e-7524-4c9f-869b-e3e047eb337e.rna_seq.genomic.gdc_realn.bam 10162809253 BAM genomic harmonized CPTAC3 f33f6995-1edd-4df0-9a7a-728b19033b87 b12b27d03bb3598c6bf60a1cdfcea25f { 'aliquot_tag': 'ALQ_1df810c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03190.RNA-Seq.R1_L001.T C3N-03190 PDA RNA-Seq tumor CPT0236560010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4889574051 FASTQ R1_L001 unaligned CPTAC3 054f03c6-579f-4f81-9e49-70c7e4267788 05572edb298a0d35ca031bb0425860ca { 'aliquot_tag': 'ALQ_1df810c0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03190.RNA-Seq.R2_L001.T C3N-03190 PDA RNA-Seq tumor CPT0236560010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 5017397148 FASTQ R2_L001 unaligned CPTAC3 51bf57de-5b73-41a0-8d32-ff476c13a1e8 3c98cb32f7e9341f01f93709989e179f { 'aliquot_tag': 'ALQ_1df810c0', 'gdc_sample_type': 'Primary Tumor' } +C3N-03190.RNA-Seq.genomic.T.hg38 C3N-03190 PDA RNA-Seq tumor CPT0236560010 a715622e-7524-4c9f-869b-e3e047eb337e.rna_seq.genomic.gdc_realn.bam 10162809253 BAM genomic harmonized CPTAC3 5e5297f4-6137-496b-b183-9ca7e9da1b72 b12b27d03bb3598c6bf60a1cdfcea25f { 'aliquot_tag': 'ALQ_1df810c0', 'gdc_sample_type': 'Primary Tumor' } +C3N-03190.RNA-Seq.R1_L001.T C3N-03190 PDA RNA-Seq tumor CPT0236560010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 4889574051 FASTQ R1_L001 unaligned CPTAC3 054f03c6-579f-4f81-9e49-70c7e4267788 05572edb298a0d35ca031bb0425860ca { 'aliquot_tag': 'ALQ_1df810c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03190.RNA-Seq.R2_L001.T C3N-03190 PDA RNA-Seq tumor CPT0236560010 190702_UNC32-K00270_0188_BH7CLJBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 5017397148 FASTQ R2_L001 unaligned CPTAC3 51bf57de-5b73-41a0-8d32-ff476c13a1e8 3c98cb32f7e9341f01f93709989e179f { 'aliquot_tag': 'ALQ_1df810c0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-03190.RNA-Seq.transcriptome.T.hg38 C3N-03190 PDA RNA-Seq tumor CPT0236560010 a715622e-7524-4c9f-869b-e3e047eb337e.rna_seq.transcriptome.gdc_realn.bam 13485932532 BAM transcriptome harmonized CPTAC3 4d07db7f-301a-4794-a2cc-1eaa04ca9bf1 69fb35bb64b8294420a98435f491e144 { 'aliquot_tag': 'ALQ_1df810c0', 'gdc_sample_type': 'Primary Tumor' } C3N-03190.WGS.N C3N-03190 PDA WGS blood_normal CPT0236610002 CPT0236610002.WholeGenome.RP-1303.bam 73518655440 BAM aligned CPTAC3 31e0d81f-ad9b-410a-9b57-f98fc5955593 92070da07777c0d93381e2af332f50ca { 'aliquot_tag': 'ALQ_de59ee13', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03190.WGS.N.hg38 C3N-03190 PDA WGS blood_normal CPT0236610002 15ca8061-9d8f-47c8-aa4f-a5ecc3445d8d_wgs_gdc_realn.bam 108902893542 BAM harmonized CPTAC3 bdb9597c-08fe-4092-a1cc-228a8327d750 32910341e543e49a0188f99414771cd2 { 'aliquot_tag': 'ALQ_de59ee13', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34827,16 +37117,16 @@ C3N-03202.miRNA-Seq.A C3N-03202 LUAD miRNA-Seq tissue_normal CPT0185040009 19071 C3N-03202.miRNA-Seq.A.hg38 C3N-03202 LUAD miRNA-Seq tissue_normal CPT0185040009 f25a7def-3c10-4b65-a212-597cd605c8a6_mirnaseq_gdc_realn.bam 255080938 BAM harmonized CPTAC3 2fea1e9a-cae8-485c-8395-9041dc2c4eac d1a83069420945640c902b4e0759f5e5 { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03202.miRNA-Seq.T C3N-03202 LUAD miRNA-Seq tumor CPT0185020010 190722_UNC31-K00269_0234_AH7VGTBBXY_GAGTGG_S19_L005_R1_001.unaln.bam 208177575 BAM unaligned CPTAC3 2cb58137-5477-447b-beb5-0fa64f9c8419 f776d9fc230ed363b9368e8cf77d1bb9 { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor' } C3N-03202.miRNA-Seq.T.hg38 C3N-03202 LUAD miRNA-Seq tumor CPT0185020010 edca62a0-2796-4074-8b48-9bc3d6111ea1_mirnaseq_gdc_realn.bam 229492060 BAM harmonized CPTAC3 f860b83a-9a53-4e10-bb71-84bf9c3c65e1 0ff37ba93be176005dea730a022cc810 { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03202.RNA-Seq.chimeric.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 6730fe6e-21f0-48b6-ba14-25167d66a293.rna_seq.chimeric.gdc_realn.bam 75680901 BAM chimeric harmonized CPTAC3 58b698be-5c0a-415b-8c04-67846b456594 2e8faf789eee979548469a5efcbb726c { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03202.RNA-Seq.chimeric.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 f707c56d-decd-4ed1-b67e-ca3630d2b5c0.rna_seq.chimeric.gdc_realn.bam 38430042 BAM chimeric harmonized CPTAC3 9906b7a5-4fe6-4464-9b39-9097dae2c12f e1672cc8ff5e18351e22b71a1937a8cb { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03202.RNA-Seq.genomic.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 6730fe6e-21f0-48b6-ba14-25167d66a293.rna_seq.genomic.gdc_realn.bam 8922242193 BAM genomic harmonized CPTAC3 61dc5a9a-1889-41c6-ba13-dfe3c96e5575 97fc3e97c76cfd43884779adf1e89be9 { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03202.RNA-Seq.genomic.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 f707c56d-decd-4ed1-b67e-ca3630d2b5c0.rna_seq.genomic.gdc_realn.bam 15588882606 BAM genomic harmonized CPTAC3 46af46f4-417d-452e-9f86-985bbc71f30d b9bcd64d86c0046e1f5bde588963ab1a { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03202.RNA-Seq.R1_L001.T C3N-03202 LUAD RNA-Seq tumor CPT0185020010 190607_UNC32-K00270_0179_BH75W2BBXY_GCAGAATT-ACCGGCCA_S1_L001_R1_001.fastq.gz 4587829806 FASTQ R1_L001 unaligned CPTAC3 183e8bbe-746b-42e7-934a-8a397997e1e4 2738262dc07c7d3c5b6a38f674490c73 { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03202.RNA-Seq.R1_L002.A C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 190702_UNC32-K00270_0187_AH7FK2BBXY_TCTCTACT-CGCGGTTC_S8_L002_R1_001.fastq.gz 3506657711 FASTQ R1_L002 unaligned CPTAC3 8bee3267-ddf6-4203-8344-ff0ba4dfda0a e2c45123e268cfee8d5233f6bd8cc443 { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03202.RNA-Seq.R2_L001.T C3N-03202 LUAD RNA-Seq tumor CPT0185020010 190607_UNC32-K00270_0179_BH75W2BBXY_GCAGAATT-ACCGGCCA_S1_L001_R2_001.fastq.gz 5216133093 FASTQ R2_L001 unaligned CPTAC3 7f22ed33-7dcb-4014-ab1a-c41bf68dd1f1 fef6ce9c4c97e379a8e806690a7e6cba { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03202.RNA-Seq.R2_L002.A C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 190702_UNC32-K00270_0187_AH7FK2BBXY_TCTCTACT-CGCGGTTC_S8_L002_R2_001.fastq.gz 3902942117 FASTQ R2_L002 unaligned CPTAC3 f21461d0-82d6-4fc5-a031-c50cdbbc3a85 3804364a72afef04883795e92c9cb03e { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03202.RNA-Seq.transcriptome.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 6730fe6e-21f0-48b6-ba14-25167d66a293.rna_seq.transcriptome.gdc_realn.bam 8067762640 BAM transcriptome harmonized CPTAC3 e1ca162d-5d5b-4742-8861-f9929368f9ba 11f21ebb358dea14e41fd6d345b6a16d { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03202.RNA-Seq.transcriptome.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 f707c56d-decd-4ed1-b67e-ca3630d2b5c0.rna_seq.transcriptome.gdc_realn.bam 10188498604 BAM transcriptome harmonized CPTAC3 800526a3-949a-4b2d-b191-9b1f0ec63aa2 1e4d82c068522d39cc80de411f912a48 { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03202.RNA-Seq.chimeric.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 233c3164-1b1a-41e0-9897-738545c10607.rna_seq.chimeric.gdc_realn.bam 75659643 BAM chimeric harmonized CPTAC3 4ff44f72-ed7c-4885-a5d7-b506a223c83e 023c70d5189e954da5b5183632e54617 { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03202.RNA-Seq.chimeric.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 ada63890-c4ed-4c3c-a1fc-2c7c1c77aaf8.rna_seq.chimeric.gdc_realn.bam 38553401 BAM chimeric harmonized CPTAC3 c9a4b841-bb60-4b55-b308-a0c489cde981 a44f5e04001379dacabc295dc5b9097d { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03202.RNA-Seq.genomic.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 233c3164-1b1a-41e0-9897-738545c10607.rna_seq.genomic.gdc_realn.bam 8923127837 BAM genomic harmonized CPTAC3 4c265305-e3cd-4aea-ad3b-24e6b5741177 2e9cde01d05ba5247c2a16abf5184fd2 { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03202.RNA-Seq.genomic.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 ada63890-c4ed-4c3c-a1fc-2c7c1c77aaf8.rna_seq.genomic.gdc_realn.bam 15594861101 BAM genomic harmonized CPTAC3 3a4157b8-b1f4-4e57-a99a-35c7277385d3 ebd118acbc6e3711b3b0dc5d3c474a6a { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03202.RNA-Seq.R1_L001.T C3N-03202 LUAD RNA-Seq tumor CPT0185020010 190607_UNC32-K00270_0179_BH75W2BBXY_GCAGAATT-ACCGGCCA_S1_L001_R1_001.fastq.gz 4587829806 FASTQ R1_L001 unaligned CPTAC3 183e8bbe-746b-42e7-934a-8a397997e1e4 2738262dc07c7d3c5b6a38f674490c73 { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03202.RNA-Seq.R1_L002.A C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 190702_UNC32-K00270_0187_AH7FK2BBXY_TCTCTACT-CGCGGTTC_S8_L002_R1_001.fastq.gz 3506657711 FASTQ R1_L002 unaligned CPTAC3 8bee3267-ddf6-4203-8344-ff0ba4dfda0a e2c45123e268cfee8d5233f6bd8cc443 { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-03202.RNA-Seq.R2_L001.T C3N-03202 LUAD RNA-Seq tumor CPT0185020010 190607_UNC32-K00270_0179_BH75W2BBXY_GCAGAATT-ACCGGCCA_S1_L001_R2_001.fastq.gz 5216133093 FASTQ R2_L001 unaligned CPTAC3 7f22ed33-7dcb-4014-ab1a-c41bf68dd1f1 fef6ce9c4c97e379a8e806690a7e6cba { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03202.RNA-Seq.R2_L002.A C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 190702_UNC32-K00270_0187_AH7FK2BBXY_TCTCTACT-CGCGGTTC_S8_L002_R2_001.fastq.gz 3902942117 FASTQ R2_L002 unaligned CPTAC3 f21461d0-82d6-4fc5-a031-c50cdbbc3a85 3804364a72afef04883795e92c9cb03e { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-03202.RNA-Seq.transcriptome.A.hg38 C3N-03202 LUAD RNA-Seq tissue_normal CPT0185040009 233c3164-1b1a-41e0-9897-738545c10607.rna_seq.transcriptome.gdc_realn.bam 9148436707 BAM transcriptome harmonized CPTAC3 950fcae8-da88-411d-bdc7-d0c673e4dda8 3d306ee7bd6d1bfda466eaa61993963d { 'aliquot_tag': 'ALQ_23d61f8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03202.RNA-Seq.transcriptome.T.hg38 C3N-03202 LUAD RNA-Seq tumor CPT0185020010 ada63890-c4ed-4c3c-a1fc-2c7c1c77aaf8.rna_seq.transcriptome.gdc_realn.bam 10679579404 BAM transcriptome harmonized CPTAC3 55e2cfd1-b339-4759-b20e-f9fad65f6d67 e41f0e16d1cf7afbac842b853cbf1e1d { 'aliquot_tag': 'ALQ_edba1dbd', 'gdc_sample_type': 'Primary Tumor' } C3N-03202.WGS.N C3N-03202 LUAD WGS blood_normal CPT0185080002 CPT0185080002.WholeGenome.RP-1303.bam 78760049301 BAM aligned CPTAC3 971be281-e3d7-4a18-9d05-a3fa370da414 b0afc8c30a9d1bcc4780cfc24d155571 { 'aliquot_tag': 'ALQ_501f5571', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03202.WGS.N.hg38 C3N-03202 LUAD WGS blood_normal CPT0185080002 fab521c6-60cf-4a16-b32f-d066d19c3bc1_wgs_gdc_realn.bam 116730769917 BAM harmonized CPTAC3 0542bf96-1726-465e-9fcb-a5ca090e2832 7bd0b8983b4299fed08e6d11af25e243 { 'aliquot_tag': 'ALQ_501f5571', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03202.WGS.T C3N-03202 LUAD WGS tumor CPT0185020007 CPT0185020007.WholeGenome.RP-1303.bam 63428256020 BAM aligned CPTAC3 a962abbc-6301-411c-a919-68330df04bf8 f3ff3d56887e7f2801719de34d3566a5 { 'aliquot_tag': 'ALQ_6ac5b95f', 'gdc_sample_type': 'Primary Tumor' } @@ -34857,12 +37147,12 @@ C3N-03204.miRNA-Seq.T C3N-03204 LSCC miRNA-Seq tumor CPT0209490009 190206_UNC31- C3N-03204.miRNA-Seq.T.hg38 C3N-03204 LSCC miRNA-Seq tumor CPT0209490009 7cf0816e-0f9f-434a-8557-53c90b7670bd_mirnaseq_gdc_realn.bam 256304041 BAM harmonized CPTAC3 4cbf5823-71ab-4568-8fb4-921c98234ac8 9e2ea7a4cab0530d1464a4dc87d73c80 { 'aliquot_tag': 'ALQ_4cf4aa5b', 'gdc_sample_type': 'Primary Tumor' } C3N-03204.RNA-Seq.chimeric.A.hg38 C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 e10c5b2c-a9c6-4810-9119-14436ffa1eff.rna_seq.chimeric.gdc_realn.bam 191125691 BAM chimeric harmonized CPTAC3 f4c89f5c-84be-4847-8d9a-4d9bc8475110 1e6a59c786b99ebb0f8aacc471ca5cf0 { 'aliquot_tag': 'ALQ_b7d8323f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03204.RNA-Seq.chimeric.T.hg38 C3N-03204 LSCC RNA-Seq tumor CPT0209490009 32ea0563-1fe9-40e2-8262-bd117b410d2d.rna_seq.chimeric.gdc_realn.bam 64096427 BAM chimeric harmonized CPTAC3 d4044162-d935-40ef-a81d-c36f613ea66d eff38a18ac065e8d850de96e425513c3 { 'aliquot_tag': 'ALQ_4cf4aa5b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03204.RNA-Seq.genomic.A.hg38 C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 e10c5b2c-a9c6-4810-9119-14436ffa1eff.rna_seq.genomic.gdc_realn.bam 8032314548 BAM genomic harmonized CPTAC3 a3040e17-dcb3-44dc-9c37-ea1a66c4e8ba a4cc19c2803cf3cc414928f9903277d6 { 'aliquot_tag': 'ALQ_b7d8323f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03204.RNA-Seq.genomic.T.hg38 C3N-03204 LSCC RNA-Seq tumor CPT0209490009 32ea0563-1fe9-40e2-8262-bd117b410d2d.rna_seq.genomic.gdc_realn.bam 8423202625 BAM genomic harmonized CPTAC3 d031d171-f685-494b-8f7a-96443938686d 2d974462333f21925eb3dab80552e736 { 'aliquot_tag': 'ALQ_4cf4aa5b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03204.RNA-Seq.R1_L003.T C3N-03204 LSCC RNA-Seq tumor CPT0209490009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L003_R1_001.fastq.gz 3938256386 FASTQ R1_L003 unaligned CPTAC3 d5277c63-b4be-4f9b-87ea-9ac078f04936 e7fc94b9afc6a2d9afd559e95320acc0 { 'aliquot_tag': 'ALQ_4cf4aa5b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03204.RNA-Seq.R1_L008.A C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L008_R1_001.fastq.gz 3748428248 FASTQ R1_L008 unaligned CPTAC3 83661a30-ad05-431c-af51-b787c34110c3 4be282a577ad28cdf79b93b49df87637 { 'aliquot_tag': 'ALQ_b7d8323f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03204.RNA-Seq.R2_L003.T C3N-03204 LSCC RNA-Seq tumor CPT0209490009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L003_R2_001.fastq.gz 4253842043 FASTQ R2_L003 unaligned CPTAC3 f295e7c3-82a0-4938-ada6-1aebcee8ab85 c2e9b7c5f6f74b1a722c4d1ac35d93df { 'aliquot_tag': 'ALQ_4cf4aa5b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03204.RNA-Seq.R2_L008.A C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L008_R2_001.fastq.gz 4250342811 FASTQ R2_L008 unaligned CPTAC3 f103cbba-4c2f-43f7-8712-a7b3552039f0 80c957df01a09345f7663231242ac7ec { 'aliquot_tag': 'ALQ_b7d8323f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03204.RNA-Seq.genomic.A.hg38 C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 e10c5b2c-a9c6-4810-9119-14436ffa1eff.rna_seq.genomic.gdc_realn.bam 8032314548 BAM genomic harmonized CPTAC3 8e9addd8-5ac5-4599-95d9-b0ee628f0d31 a4cc19c2803cf3cc414928f9903277d6 { 'aliquot_tag': 'ALQ_b7d8323f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03204.RNA-Seq.genomic.T.hg38 C3N-03204 LSCC RNA-Seq tumor CPT0209490009 32ea0563-1fe9-40e2-8262-bd117b410d2d.rna_seq.genomic.gdc_realn.bam 8423202625 BAM genomic harmonized CPTAC3 fdf48999-96dd-48b6-89dc-3a43afe4a61b 2d974462333f21925eb3dab80552e736 { 'aliquot_tag': 'ALQ_4cf4aa5b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03204.RNA-Seq.R1_L003.T C3N-03204 LSCC RNA-Seq tumor CPT0209490009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L003_R1_001.fastq.gz 3938256386 FASTQ R1_L003 unaligned CPTAC3 d5277c63-b4be-4f9b-87ea-9ac078f04936 e7fc94b9afc6a2d9afd559e95320acc0 { 'aliquot_tag': 'ALQ_4cf4aa5b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03204.RNA-Seq.R1_L008.A C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L008_R1_001.fastq.gz 3748428248 FASTQ R1_L008 unaligned CPTAC3 83661a30-ad05-431c-af51-b787c34110c3 4be282a577ad28cdf79b93b49df87637 { 'aliquot_tag': 'ALQ_b7d8323f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-03204.RNA-Seq.R2_L003.T C3N-03204 LSCC RNA-Seq tumor CPT0209490009 190205_UNC32-K00270_0144_BH3M3NBBXY_CGATGT_S11_L003_R2_001.fastq.gz 4253842043 FASTQ R2_L003 unaligned CPTAC3 f295e7c3-82a0-4938-ada6-1aebcee8ab85 c2e9b7c5f6f74b1a722c4d1ac35d93df { 'aliquot_tag': 'ALQ_4cf4aa5b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-03204.RNA-Seq.R2_L008.A C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 190208_UNC32-K00270_0145_AH3VHMBBXY_CAGATC_S8_L008_R2_001.fastq.gz 4250342811 FASTQ R2_L008 unaligned CPTAC3 f103cbba-4c2f-43f7-8712-a7b3552039f0 80c957df01a09345f7663231242ac7ec { 'aliquot_tag': 'ALQ_b7d8323f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-03204.RNA-Seq.transcriptome.A.hg38 C3N-03204 LSCC RNA-Seq tissue_normal CPT0209510009 e10c5b2c-a9c6-4810-9119-14436ffa1eff.rna_seq.transcriptome.gdc_realn.bam 9993155660 BAM transcriptome harmonized CPTAC3 42355b3b-9335-4760-a55e-8beae58ea145 4ae1842babd63ac351b863561bbc5720 { 'aliquot_tag': 'ALQ_b7d8323f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03204.RNA-Seq.transcriptome.T.hg38 C3N-03204 LSCC RNA-Seq tumor CPT0209490009 32ea0563-1fe9-40e2-8262-bd117b410d2d.rna_seq.transcriptome.gdc_realn.bam 12215688496 BAM transcriptome harmonized CPTAC3 31f33ed3-490e-4402-95be-bbdae7e33d27 6c23ebc127a8ab4f0010e0ede36c40e3 { 'aliquot_tag': 'ALQ_4cf4aa5b', 'gdc_sample_type': 'Primary Tumor' } C3N-03204.WGS.N C3N-03204 LSCC WGS blood_normal CPT0209550002 CPT0209550002.WholeGenome.RP-1303.bam 57086367827 BAM aligned CPTAC3 4b39c604-73cb-44f6-80cd-ecd8d0501001 3b9b9d19eb56abce5844796b9d643e4e { 'aliquot_tag': 'ALQ_d58a4d77', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34883,16 +37173,16 @@ C3N-03205.miRNA-Seq.A C3N-03205 LUAD miRNA-Seq tissue_normal CPT0185110009 19013 C3N-03205.miRNA-Seq.A.hg38 C3N-03205 LUAD miRNA-Seq tissue_normal CPT0185110009 5d3be101-31c2-4409-b087-afec8fb3951b_mirnaseq_gdc_realn.bam 363524209 BAM harmonized CPTAC3 e90d8440-0d81-4dad-83dd-6f63c66dc7ea 1c33fd2e1fbae632988e233fd15bad29 { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03205.miRNA-Seq.T C3N-03205 LUAD miRNA-Seq tumor CPT0185090009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCCCGA_S46_L007_R1_001.unaln.bam 276816917 BAM unaligned CPTAC3 e0e97964-6c85-4166-b231-982b96281da4 7f66489c8a08a9c7ebd0f2413d6e9f97 { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor' } C3N-03205.miRNA-Seq.T.hg38 C3N-03205 LUAD miRNA-Seq tumor CPT0185090009 96a4d324-d8c0-4890-afbc-0660d9fc65d0_mirnaseq_gdc_realn.bam 303447320 BAM harmonized CPTAC3 b460e2c8-e933-4a47-b29c-383a1029cc35 f46d322b544ada12646d418f6af6cee7 { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor' } -C3N-03205.RNA-Seq.chimeric.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 2bd4aa95-220b-4a01-8329-bdc5947a34f5.rna_seq.chimeric.gdc_realn.bam 49683635 BAM chimeric harmonized CPTAC3 a1648ca0-8553-4b75-bf77-5dd039557a97 4d7b354176b73146fe26dd14bdcf1b1f { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03205.RNA-Seq.chimeric.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 329642bf-431e-4b1b-886f-4065f46ef569.rna_seq.chimeric.gdc_realn.bam 53677561 BAM chimeric harmonized CPTAC3 c95d6236-1561-4ef0-85b7-e751ce359a55 969f6b6281d5597d8ea8495b2f3307de { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor' } -C3N-03205.RNA-Seq.genomic.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 2bd4aa95-220b-4a01-8329-bdc5947a34f5.rna_seq.genomic.gdc_realn.bam 9397678549 BAM genomic harmonized CPTAC3 2da46c16-dc16-4ae5-8616-b123471992a8 b57dfb28e504ce26f869f37b11ad3945 { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03205.RNA-Seq.genomic.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 329642bf-431e-4b1b-886f-4065f46ef569.rna_seq.genomic.gdc_realn.bam 9082848428 BAM genomic harmonized CPTAC3 027dae3e-3b08-4c6b-953a-a139957eb4ca f3badba675c733bc2370128c08a2a445 { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor' } -C3N-03205.RNA-Seq.R1_L003.A C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 190201_UNC31-K00269_0190_BH3LFKBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4175361887 FASTQ R1_L003 unaligned CPTAC3 43b0ebd2-bca9-4192-b868-28e2c828fc8c c4361793f6dbf151d272d3a7ff4bc079 { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03205.RNA-Seq.R1_L005.T C3N-03205 LUAD RNA-Seq tumor CPT0185090009 190131_UNC32-K00270_0142_BH3LFYBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 4206041848 FASTQ R1_L005 unaligned CPTAC3 fd859ae0-a877-493d-b6c1-4eb9eeb1d491 404a8764fb2b41c1e249d3bff61c5aa4 { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor' } -C3N-03205.RNA-Seq.R2_L003.A C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 190201_UNC31-K00269_0190_BH3LFKBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4676252143 FASTQ R2_L003 unaligned CPTAC3 a38ce374-5eca-4b8a-866f-a5a0e590a169 60531edb6b258edf79db3497ba7a15fe { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03205.RNA-Seq.R2_L005.T C3N-03205 LUAD RNA-Seq tumor CPT0185090009 190131_UNC32-K00270_0142_BH3LFYBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4582864920 FASTQ R2_L005 unaligned CPTAC3 41635ab5-5d6f-4ac9-b20b-74107d9062b5 85d7bd68ae7fbdf1bde13d65e673becd { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor' } -C3N-03205.RNA-Seq.transcriptome.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 2bd4aa95-220b-4a01-8329-bdc5947a34f5.rna_seq.transcriptome.gdc_realn.bam 8727499911 BAM transcriptome harmonized CPTAC3 38bf9f79-a849-4ca5-b659-0a19dabc625f e0ece575c078f8d08ff3c96c23e122b4 { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03205.RNA-Seq.transcriptome.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 329642bf-431e-4b1b-886f-4065f46ef569.rna_seq.transcriptome.gdc_realn.bam 9708615561 BAM transcriptome harmonized CPTAC3 cead4141-a274-4a74-a3bd-2f93fb9f23d9 bfba897880e8ae514c132360baa6c1bb { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor' } +C3N-03205.RNA-Seq.chimeric.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 59cbee8a-cfba-4604-ba97-99a7d2f9b67d.rna_seq.chimeric.gdc_realn.bam 49680713 BAM chimeric harmonized CPTAC3 9222be3b-8d8a-4428-a6cd-2d1d0faec7c7 29a032932afc8089e5ce1c3728876e0e { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03205.RNA-Seq.chimeric.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 eabcb5f9-1ab5-48f2-b731-4890e51b1ce4.rna_seq.chimeric.gdc_realn.bam 53683644 BAM chimeric harmonized CPTAC3 b7d0cf5a-b91a-4c7e-880a-f1a4aa277008 83de1bf28b4d2b58fe6a99a79b6d6191 { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor' } +C3N-03205.RNA-Seq.genomic.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 59cbee8a-cfba-4604-ba97-99a7d2f9b67d.rna_seq.genomic.gdc_realn.bam 9399058888 BAM genomic harmonized CPTAC3 f9e2b0fe-9679-43cc-9173-ef84211796cf ff2be1a7acfe5e17f0001adef51c4b0d { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03205.RNA-Seq.genomic.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 eabcb5f9-1ab5-48f2-b731-4890e51b1ce4.rna_seq.genomic.gdc_realn.bam 9084646275 BAM genomic harmonized CPTAC3 872032ca-1ea6-47d3-bfda-0e27f075346b ea6023a6bd27f534bbd82338fc0b2dc2 { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor' } +C3N-03205.RNA-Seq.R1_L003.A C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 190201_UNC31-K00269_0190_BH3LFKBBXY_GCCAAT_S11_L003_R1_001.fastq.gz 4175361887 FASTQ R1_L003 unaligned CPTAC3 43b0ebd2-bca9-4192-b868-28e2c828fc8c c4361793f6dbf151d272d3a7ff4bc079 { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03205.RNA-Seq.R1_L005.T C3N-03205 LUAD RNA-Seq tumor CPT0185090009 190131_UNC32-K00270_0142_BH3LFYBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 4206041848 FASTQ R1_L005 unaligned CPTAC3 fd859ae0-a877-493d-b6c1-4eb9eeb1d491 404a8764fb2b41c1e249d3bff61c5aa4 { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03205.RNA-Seq.R2_L003.A C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 190201_UNC31-K00269_0190_BH3LFKBBXY_GCCAAT_S11_L003_R2_001.fastq.gz 4676252143 FASTQ R2_L003 unaligned CPTAC3 a38ce374-5eca-4b8a-866f-a5a0e590a169 60531edb6b258edf79db3497ba7a15fe { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03205.RNA-Seq.R2_L005.T C3N-03205 LUAD RNA-Seq tumor CPT0185090009 190131_UNC32-K00270_0142_BH3LFYBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4582864920 FASTQ R2_L005 unaligned CPTAC3 41635ab5-5d6f-4ac9-b20b-74107d9062b5 85d7bd68ae7fbdf1bde13d65e673becd { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-03205.RNA-Seq.transcriptome.A.hg38 C3N-03205 LUAD RNA-Seq tissue_normal CPT0185110009 59cbee8a-cfba-4604-ba97-99a7d2f9b67d.rna_seq.transcriptome.gdc_realn.bam 9882832390 BAM transcriptome harmonized CPTAC3 41379734-6383-40d0-beb3-ce7e8ad2f577 7bd0a7d94dc548193155a671faab183b { 'aliquot_tag': 'ALQ_1813d2d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03205.RNA-Seq.transcriptome.T.hg38 C3N-03205 LUAD RNA-Seq tumor CPT0185090009 eabcb5f9-1ab5-48f2-b731-4890e51b1ce4.rna_seq.transcriptome.gdc_realn.bam 10876995331 BAM transcriptome harmonized CPTAC3 2fa0fe6f-c642-43b8-b6a3-17301a20482e d9f73432bc8d5e047cf23d382e0de755 { 'aliquot_tag': 'ALQ_faada549', 'gdc_sample_type': 'Primary Tumor' } C3N-03205.WGS.N C3N-03205 LUAD WGS blood_normal CPT0185150002 CPT0185150002.WholeGenome.RP-1303.bam 108528834101 BAM aligned CPTAC3 9b8755ce-f53e-4dc1-aca8-cd268f1d7dea 3912d0f2bae9368cf1021e05773bfdfd { 'aliquot_tag': 'ALQ_63d34265', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03205.WGS.N.hg38 C3N-03205 LUAD WGS blood_normal CPT0185150002 d7bd333c-9f0c-4452-9d22-21e5bf68b70b_wgs_gdc_realn.bam 156231455930 BAM harmonized CPTAC3 65e7d4fb-79c2-48bd-be83-b39a7b2c2c97 ab13a57a128ba9a7f2f9ee31e0f810b1 { 'aliquot_tag': 'ALQ_63d34265', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03205.WGS.T C3N-03205 LUAD WGS tumor CPT0185090006 CPT0185090006.WholeGenome.RP-1303.bam 122312535120 BAM aligned CPTAC3 732f80c9-520c-43f1-9995-bacdbedf2e36 42349f519cf1d2adf66e89a43f594bcf { 'aliquot_tag': 'ALQ_6a12b8d8', 'gdc_sample_type': 'Primary Tumor' } @@ -34911,16 +37201,16 @@ C3N-03210.miRNA-Seq.A C3N-03210 LUAD miRNA-Seq tissue_normal CPT0185180009 19071 C3N-03210.miRNA-Seq.A.hg38 C3N-03210 LUAD miRNA-Seq tissue_normal CPT0185180009 cc1bc389-f542-46f4-8c62-f6522aa084b4_mirnaseq_gdc_realn.bam 235466337 BAM harmonized CPTAC3 a79631da-2ba3-4c54-8ceb-48a36f31bd5d 2812506ab97df7368368fade42712b58 { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03210.miRNA-Seq.T C3N-03210 LUAD miRNA-Seq tumor CPT0185170009 190722_UNC31-K00269_0234_AH7VGTBBXY_GGTAGC_S20_L005_R1_001.unaln.bam 174209740 BAM unaligned CPTAC3 5a9816d4-1959-42e8-abb1-326b3a89f7e6 b75205c5e9ea299c9a17744ee1991836 { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor' } C3N-03210.miRNA-Seq.T.hg38 C3N-03210 LUAD miRNA-Seq tumor CPT0185170009 90366784-4620-410c-b4eb-a3f6a9f36673_mirnaseq_gdc_realn.bam 194023045 BAM harmonized CPTAC3 19736ca2-b4f8-49bc-a9fe-b96a627f6ca3 34dbae602646837d32f5c6c3c4309a5d { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03210.RNA-Seq.chimeric.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 644646c9-db50-41dd-a569-54af13ce6f69.rna_seq.chimeric.gdc_realn.bam 68513436 BAM chimeric harmonized CPTAC3 07c9c651-b74a-41ef-b96e-df625fd07a3e bec65177655dab392de9b42d926d35c5 { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03210.RNA-Seq.chimeric.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 4ceb3708-0a39-48f8-ae99-f6861892d90b.rna_seq.chimeric.gdc_realn.bam 46450809 BAM chimeric harmonized CPTAC3 4fe1dd97-dd67-427c-ae63-ddcb583775fc 777ad36b2d4738633b29e687f511ea46 { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03210.RNA-Seq.genomic.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 644646c9-db50-41dd-a569-54af13ce6f69.rna_seq.genomic.gdc_realn.bam 10685363595 BAM genomic harmonized CPTAC3 d2ed502c-b252-411a-9bd9-dbbce3043ec6 2c9c6c223955eb67ae5a27a4de334bfc { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03210.RNA-Seq.genomic.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 4ceb3708-0a39-48f8-ae99-f6861892d90b.rna_seq.genomic.gdc_realn.bam 13160486073 BAM genomic harmonized CPTAC3 c78d2b2d-678f-467b-b2be-04169a863f4e eac1687a598207d341f5221e0e93acb0 { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03210.RNA-Seq.R1_L001.T C3N-03210 LUAD RNA-Seq tumor CPT0185170009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGAGGCC-GTTAATTG_S4_L001_R1_001.fastq.gz 4455352989 FASTQ R1_L001 unaligned CPTAC3 b3fcb1e2-deb3-4705-898a-b803f70309ac a00ecc08fb041db6320efbd2586e1f58 { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03210.RNA-Seq.R1_L006.A C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 190725_UNC32-K00270_0194_AH7HHFBBXY_CTCTCGTC-TATAACCT_S23_L006_R1_001.fastq.gz 4826334971 FASTQ R1_L006 unaligned CPTAC3 7a53c7bd-25d4-456f-868e-9a7406df1656 df3ac7dc957ebd7549e9b0ea0ad9abdc { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03210.RNA-Seq.R2_L001.T C3N-03210 LUAD RNA-Seq tumor CPT0185170009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGAGGCC-GTTAATTG_S4_L001_R2_001.fastq.gz 5116449263 FASTQ R2_L001 unaligned CPTAC3 a02fcc2e-4533-47e9-8c30-831d8aba8439 a83ad11c968e057dc9aba32f8b544660 { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03210.RNA-Seq.R2_L006.A C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 190725_UNC32-K00270_0194_AH7HHFBBXY_CTCTCGTC-TATAACCT_S23_L006_R2_001.fastq.gz 4985608615 FASTQ R2_L006 unaligned CPTAC3 a851467b-e5c4-4a41-8462-5f9567e7a3e4 f4de378055892e0ac33b1447f0e16ad1 { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03210.RNA-Seq.transcriptome.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 644646c9-db50-41dd-a569-54af13ce6f69.rna_seq.transcriptome.gdc_realn.bam 10339240467 BAM transcriptome harmonized CPTAC3 018d00f2-e0fd-4e9c-b458-a9488ee0c961 d0ea2e03c8d029743d0b275765bf7b01 { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03210.RNA-Seq.transcriptome.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 4ceb3708-0a39-48f8-ae99-f6861892d90b.rna_seq.transcriptome.gdc_realn.bam 9044960074 BAM transcriptome harmonized CPTAC3 1d6448c1-2281-4457-9bb6-02872c22efb8 42af41f1f0dc2f3bf4f9e4074ae87a37 { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03210.RNA-Seq.chimeric.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 5d7bb4b9-3598-4bcf-b68e-87b1bf35c69c.rna_seq.chimeric.gdc_realn.bam 68494430 BAM chimeric harmonized CPTAC3 b817a199-6a32-412d-85f3-975a1558db19 f0731bf82142b229348eeda9a7306094 { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03210.RNA-Seq.chimeric.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 7c38cbf6-22f4-45c5-bbb4-bd5dcbc60fc1.rna_seq.chimeric.gdc_realn.bam 46467576 BAM chimeric harmonized CPTAC3 4a6c8f28-ddd3-4fb8-9dd2-8b265bd0837d 4bc83dfe78b801ae47594e3bff37ad13 { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03210.RNA-Seq.genomic.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 5d7bb4b9-3598-4bcf-b68e-87b1bf35c69c.rna_seq.genomic.gdc_realn.bam 10686766694 BAM genomic harmonized CPTAC3 49d0523e-3529-476c-a43e-3abb76f26c30 ecad6df05e2b5ea33849b5247c495bb8 { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03210.RNA-Seq.genomic.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 7c38cbf6-22f4-45c5-bbb4-bd5dcbc60fc1.rna_seq.genomic.gdc_realn.bam 13161415704 BAM genomic harmonized CPTAC3 aa754e98-96f5-48b6-9a71-0d0cf5f8475a b168e64172ccb51dfbe562ef187eacf9 { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03210.RNA-Seq.R1_L001.T C3N-03210 LUAD RNA-Seq tumor CPT0185170009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGAGGCC-GTTAATTG_S4_L001_R1_001.fastq.gz 4455352989 FASTQ R1_L001 unaligned CPTAC3 b3fcb1e2-deb3-4705-898a-b803f70309ac a00ecc08fb041db6320efbd2586e1f58 { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03210.RNA-Seq.R1_L006.A C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 190725_UNC32-K00270_0194_AH7HHFBBXY_CTCTCGTC-TATAACCT_S23_L006_R1_001.fastq.gz 4826334971 FASTQ R1_L006 unaligned CPTAC3 7a53c7bd-25d4-456f-868e-9a7406df1656 df3ac7dc957ebd7549e9b0ea0ad9abdc { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03210.RNA-Seq.R2_L001.T C3N-03210 LUAD RNA-Seq tumor CPT0185170009 190607_UNC32-K00270_0179_BH75W2BBXY_ATGAGGCC-GTTAATTG_S4_L001_R2_001.fastq.gz 5116449263 FASTQ R2_L001 unaligned CPTAC3 a02fcc2e-4533-47e9-8c30-831d8aba8439 a83ad11c968e057dc9aba32f8b544660 { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03210.RNA-Seq.R2_L006.A C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 190725_UNC32-K00270_0194_AH7HHFBBXY_CTCTCGTC-TATAACCT_S23_L006_R2_001.fastq.gz 4985608615 FASTQ R2_L006 unaligned CPTAC3 a851467b-e5c4-4a41-8462-5f9567e7a3e4 f4de378055892e0ac33b1447f0e16ad1 { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-03210.RNA-Seq.transcriptome.A.hg38 C3N-03210 LUAD RNA-Seq tissue_normal CPT0185180009 5d7bb4b9-3598-4bcf-b68e-87b1bf35c69c.rna_seq.transcriptome.gdc_realn.bam 11743420705 BAM transcriptome harmonized CPTAC3 4b70be4d-20ee-4a18-be16-cc97310388aa 9ea58b3c858409c7c5de3204edcc5e10 { 'aliquot_tag': 'ALQ_c915f5c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03210.RNA-Seq.transcriptome.T.hg38 C3N-03210 LUAD RNA-Seq tumor CPT0185170009 7c38cbf6-22f4-45c5-bbb4-bd5dcbc60fc1.rna_seq.transcriptome.gdc_realn.bam 10140439306 BAM transcriptome harmonized CPTAC3 d2ee4007-25ac-44e9-b555-b192c897068c 6f69b8f4549c5b27699f9b54809d06ed { 'aliquot_tag': 'ALQ_8ec1c88d', 'gdc_sample_type': 'Primary Tumor' } C3N-03210.WGS.N C3N-03210 LUAD WGS blood_normal CPT0185220002 CPT0185220002.WholeGenome.RP-1303.bam 71731958410 BAM aligned CPTAC3 9b8c993c-fbab-4b5d-8268-a7ffc56bdcc8 24167b2c8c3cf3ed13e7cdc5f0eece12 { 'aliquot_tag': 'ALQ_5767ecdb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03210.WGS.N.hg38 C3N-03210 LUAD WGS blood_normal CPT0185220002 dd92c831-83c8-43a7-a2ae-6096acc30f44_wgs_gdc_realn.bam 105128649484 BAM harmonized CPTAC3 93a3331f-17c6-41a1-835d-e7e096c82f05 b04709ef90bcdf1229abc001b7fc6f13 { 'aliquot_tag': 'ALQ_5767ecdb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03210.WGS.T C3N-03210 LUAD WGS tumor CPT0185170006 CPT0185170006.WholeGenome.RP-1303.bam 61421911127 BAM aligned CPTAC3 483a1d99-f850-42e7-8cba-2ff7b6a3895d 02f80a2839949bb59d5a893ea62d10d3 { 'aliquot_tag': 'ALQ_1e7ed51c', 'gdc_sample_type': 'Primary Tumor' } @@ -34938,9 +37228,9 @@ C3N-03211.MethArray.Red.T C3N-03211 PDA Methylation Array tumor CPT0209640008 20 C3N-03211.miRNA-Seq.T C3N-03211 PDA miRNA-Seq tumor CPT0209640011 190813_UNC32-K00270_0196_AH5MCWBBXY_ATCACG_S30_L004_R1_001.unaln.bam 174449374 BAM unaligned CPTAC3 2dc8da72-4ee2-43ac-b0fd-d32210479b31 eb93caa88ba103d4c85167fbf551b112 { 'aliquot_tag': 'ALQ_ee6c7692', 'gdc_sample_type': 'Primary Tumor' } C3N-03211.miRNA-Seq.T.hg38 C3N-03211 PDA miRNA-Seq tumor CPT0209640011 3be3f8d3-4a87-4406-8b32-342ac6aa234a_mirnaseq_gdc_realn.bam 202061520 BAM harmonized CPTAC3 3f5d769b-652c-464d-b488-95ae2b69227c bc0885d388bdfdc6d0fc233367b9f206 { 'aliquot_tag': 'ALQ_ee6c7692', 'gdc_sample_type': 'Primary Tumor' } C3N-03211.RNA-Seq.chimeric.T.hg38 C3N-03211 PDA RNA-Seq tumor CPT0209640011 271af2f6-64bb-46e9-a3f8-5c1b8e268bdd.rna_seq.chimeric.gdc_realn.bam 173925371 BAM chimeric harmonized CPTAC3 87090459-9a51-4c27-bf5c-1476a4f05bec 2f31d5e5b1e9b1a447c1d7fe89abfe86 { 'aliquot_tag': 'ALQ_ee6c7692', 'gdc_sample_type': 'Primary Tumor' } -C3N-03211.RNA-Seq.genomic.T.hg38 C3N-03211 PDA RNA-Seq tumor CPT0209640011 271af2f6-64bb-46e9-a3f8-5c1b8e268bdd.rna_seq.genomic.gdc_realn.bam 11866304330 BAM genomic harmonized CPTAC3 7d4aaf93-8952-4646-a413-1ab46245100b 5bcc7e3acfbd4166f2902293d6c510b6 { 'aliquot_tag': 'ALQ_ee6c7692', 'gdc_sample_type': 'Primary Tumor' } -C3N-03211.RNA-Seq.R1_L008.T C3N-03211 PDA RNA-Seq tumor CPT0209640011 190717_UNC31-K00269_0233_BH7HG5BBXY_ATATCTCG-ATCTTAGT_S31_L008_R1_001.fastq.gz 4364728335 FASTQ R1_L008 unaligned CPTAC3 94e12957-beef-4ee5-8b65-012c89f8d49e 946114bb920762c5edb030da8e3af952 { 'aliquot_tag': 'ALQ_ee6c7692', 'gdc_sample_type': 'Primary Tumor' } -C3N-03211.RNA-Seq.R2_L008.T C3N-03211 PDA RNA-Seq tumor CPT0209640011 190717_UNC31-K00269_0233_BH7HG5BBXY_ATATCTCG-ATCTTAGT_S31_L008_R2_001.fastq.gz 4563789886 FASTQ R2_L008 unaligned CPTAC3 7de4094f-10c7-4de4-987f-6c73577e720f 8d1dce54de2f392602b6dac38d91c58c { 'aliquot_tag': 'ALQ_ee6c7692', 'gdc_sample_type': 'Primary Tumor' } +C3N-03211.RNA-Seq.genomic.T.hg38 C3N-03211 PDA RNA-Seq tumor CPT0209640011 271af2f6-64bb-46e9-a3f8-5c1b8e268bdd.rna_seq.genomic.gdc_realn.bam 11866304330 BAM genomic harmonized CPTAC3 830e97c2-6202-434d-ae24-652e328e9783 5bcc7e3acfbd4166f2902293d6c510b6 { 'aliquot_tag': 'ALQ_ee6c7692', 'gdc_sample_type': 'Primary Tumor' } +C3N-03211.RNA-Seq.R1_L008.T C3N-03211 PDA RNA-Seq tumor CPT0209640011 190717_UNC31-K00269_0233_BH7HG5BBXY_ATATCTCG-ATCTTAGT_S31_L008_R1_001.fastq.gz 4364728335 FASTQ R1_L008 unaligned CPTAC3 94e12957-beef-4ee5-8b65-012c89f8d49e 946114bb920762c5edb030da8e3af952 { 'aliquot_tag': 'ALQ_ee6c7692', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03211.RNA-Seq.R2_L008.T C3N-03211 PDA RNA-Seq tumor CPT0209640011 190717_UNC31-K00269_0233_BH7HG5BBXY_ATATCTCG-ATCTTAGT_S31_L008_R2_001.fastq.gz 4563789886 FASTQ R2_L008 unaligned CPTAC3 7de4094f-10c7-4de4-987f-6c73577e720f 8d1dce54de2f392602b6dac38d91c58c { 'aliquot_tag': 'ALQ_ee6c7692', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-03211.RNA-Seq.transcriptome.T.hg38 C3N-03211 PDA RNA-Seq tumor CPT0209640011 271af2f6-64bb-46e9-a3f8-5c1b8e268bdd.rna_seq.transcriptome.gdc_realn.bam 9934075596 BAM transcriptome harmonized CPTAC3 50a6a125-3307-49ef-a747-ff4c6fc90dc0 2290179f6eac71a74c15de877b5df144 { 'aliquot_tag': 'ALQ_ee6c7692', 'gdc_sample_type': 'Primary Tumor' } C3N-03211.WGS.N C3N-03211 PDA WGS blood_normal CPT0209690002 CPT0209690002.WholeGenome.RP-1303.bam 64317613401 BAM aligned CPTAC3 b67e70c3-b014-4e38-8939-4f9c63dde2eb 792aa4e86153ca830993123d11540a1c { 'aliquot_tag': 'ALQ_96eed2d8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03211.WGS.N.hg38 C3N-03211 PDA WGS blood_normal CPT0209690002 e989c046-a885-4bfd-a2a5-666bd6577e3a_wgs_gdc_realn.bam 94566685096 BAM harmonized CPTAC3 3ecf3417-d869-4012-aa60-e0b8e73f745a c93c362a9b1fd02e076d2731179107e9 { 'aliquot_tag': 'ALQ_96eed2d8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34958,16 +37248,16 @@ C3N-03212.miRNA-Seq.A C3N-03212 LUAD miRNA-Seq tissue_normal CPT0185250009 19013 C3N-03212.miRNA-Seq.A.hg38 C3N-03212 LUAD miRNA-Seq tissue_normal CPT0185250009 db99eab2-213a-4586-a1ba-3a05edc7f49f_mirnaseq_gdc_realn.bam 264438696 BAM harmonized CPTAC3 4628a2e3-fb83-4c66-a123-0587be468c85 9ed19588317ec2f9380e63833ca824e8 { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03212.miRNA-Seq.T C3N-03212 LUAD miRNA-Seq tumor CPT0185230009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCGAAG_S47_L007_R1_001.unaln.bam 194942531 BAM unaligned CPTAC3 e21c0681-2c7c-4a7e-b717-c0a21a6b1470 06d22a0cb561bb52bf591d8e132f3518 { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor' } C3N-03212.miRNA-Seq.T.hg38 C3N-03212 LUAD miRNA-Seq tumor CPT0185230009 11132687-690f-4240-9579-f9c024a0242e_mirnaseq_gdc_realn.bam 215491168 BAM harmonized CPTAC3 7016cd99-edba-4def-a725-d8dc1666d8c4 bcbb72675dfaf2ee5815b4aaa83ab8ba { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03212.RNA-Seq.chimeric.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 faddc4c2-efc6-4045-9811-b8503cc75fa4.rna_seq.chimeric.gdc_realn.bam 86328302 BAM chimeric harmonized CPTAC3 d6057acb-b1fd-4e22-98f7-f2100df454a9 18373ba574fa5354ba20965ff4b83b8c { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03212.RNA-Seq.chimeric.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 91c9102b-b20f-4fe7-b4e0-83774a1c9bbe.rna_seq.chimeric.gdc_realn.bam 67347624 BAM chimeric harmonized CPTAC3 abdc7f16-d580-4e25-80ce-b29547df5fdf 689b5f4591c4d239ab7434e23ad957e3 { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03212.RNA-Seq.genomic.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 faddc4c2-efc6-4045-9811-b8503cc75fa4.rna_seq.genomic.gdc_realn.bam 10959481726 BAM genomic harmonized CPTAC3 180cfb39-dd7f-4416-bd85-277a14434945 37a0b5ffd1da04fb5ff8b1a9c032b123 { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03212.RNA-Seq.genomic.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 91c9102b-b20f-4fe7-b4e0-83774a1c9bbe.rna_seq.genomic.gdc_realn.bam 10504293415 BAM genomic harmonized CPTAC3 bd366f51-a08c-4549-8786-480b25335b47 014fc82aa90f58a27078e5add4ee5957 { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03212.RNA-Seq.R1_L003.A C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 190201_UNC31-K00269_0190_BH3LFKBBXY_CAGATC_S10_L003_R1_001.fastq.gz 5029004974 FASTQ R1_L003 unaligned CPTAC3 442830a1-16e0-4a52-9c30-c8b9e06e4756 be12b8d82b31de91925c514db12fd752 { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03212.RNA-Seq.R1_L005.T C3N-03212 LUAD RNA-Seq tumor CPT0185230009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4969583207 FASTQ R1_L005 unaligned CPTAC3 ce93bb1f-bb32-4346-8bb8-e8f8354a3f98 46335f8df39a73e0e269712f1cafe48c { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03212.RNA-Seq.R2_L003.A C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 190201_UNC31-K00269_0190_BH3LFKBBXY_CAGATC_S10_L003_R2_001.fastq.gz 5648598919 FASTQ R2_L003 unaligned CPTAC3 1fe294c0-dc14-452b-8d9d-2df13b28c230 c15bb2379c8c8ebb18412b8fa3fdb3fd { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03212.RNA-Seq.R2_L005.T C3N-03212 LUAD RNA-Seq tumor CPT0185230009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 5320519602 FASTQ R2_L005 unaligned CPTAC3 f06ed433-6d34-4733-9e57-ecb3cd73e819 d3f60f20e7be87296e06582a0c404b90 { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03212.RNA-Seq.transcriptome.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 faddc4c2-efc6-4045-9811-b8503cc75fa4.rna_seq.transcriptome.gdc_realn.bam 11592335860 BAM transcriptome harmonized CPTAC3 868bd276-f0ed-4fbb-880a-25be0adc8541 4ef2f262814ebe3a36906661830e31b4 { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03212.RNA-Seq.transcriptome.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 91c9102b-b20f-4fe7-b4e0-83774a1c9bbe.rna_seq.transcriptome.gdc_realn.bam 10236887123 BAM transcriptome harmonized CPTAC3 11147935-b9c6-483a-8a97-1c4a5eeca15c 69cdebf67539004bfe1d15b0abcde266 { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03212.RNA-Seq.chimeric.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 96ec5d49-0218-48ad-9e63-ac2e408d2d32.rna_seq.chimeric.gdc_realn.bam 86300962 BAM chimeric harmonized CPTAC3 e450a75b-db64-4cd1-b9ce-7a01a1e91007 31945eacff537d70f717cbe9ea70a1cf { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03212.RNA-Seq.chimeric.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 30beb182-316e-4f27-983c-c95d7cae3b90.rna_seq.chimeric.gdc_realn.bam 67326607 BAM chimeric harmonized CPTAC3 270caa2f-994b-49cf-b422-5cd9dece0516 c054bb9d90f325387caa6e841b37702b { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03212.RNA-Seq.genomic.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 96ec5d49-0218-48ad-9e63-ac2e408d2d32.rna_seq.genomic.gdc_realn.bam 10961070390 BAM genomic harmonized CPTAC3 908e207a-0689-453a-9f37-993625c2e43f 6d2cad5465c44f8ac838fe5fcd414528 { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03212.RNA-Seq.genomic.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 30beb182-316e-4f27-983c-c95d7cae3b90.rna_seq.genomic.gdc_realn.bam 10506039541 BAM genomic harmonized CPTAC3 db1948c7-5fea-414b-9a6b-9c7256a31a01 8dc28f858a1985efd07165c5aa3ab8c3 { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03212.RNA-Seq.R1_L003.A C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 190201_UNC31-K00269_0190_BH3LFKBBXY_CAGATC_S10_L003_R1_001.fastq.gz 5029004974 FASTQ R1_L003 unaligned CPTAC3 442830a1-16e0-4a52-9c30-c8b9e06e4756 be12b8d82b31de91925c514db12fd752 { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03212.RNA-Seq.R1_L005.T C3N-03212 LUAD RNA-Seq tumor CPT0185230009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4969583207 FASTQ R1_L005 unaligned CPTAC3 ce93bb1f-bb32-4346-8bb8-e8f8354a3f98 46335f8df39a73e0e269712f1cafe48c { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03212.RNA-Seq.R2_L003.A C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 190201_UNC31-K00269_0190_BH3LFKBBXY_CAGATC_S10_L003_R2_001.fastq.gz 5648598919 FASTQ R2_L003 unaligned CPTAC3 1fe294c0-dc14-452b-8d9d-2df13b28c230 c15bb2379c8c8ebb18412b8fa3fdb3fd { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03212.RNA-Seq.R2_L005.T C3N-03212 LUAD RNA-Seq tumor CPT0185230009 190131_UNC32-K00270_0142_BH3LFYBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 5320519602 FASTQ R2_L005 unaligned CPTAC3 f06ed433-6d34-4733-9e57-ecb3cd73e819 d3f60f20e7be87296e06582a0c404b90 { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-03212.RNA-Seq.transcriptome.A.hg38 C3N-03212 LUAD RNA-Seq tissue_normal CPT0185250009 96ec5d49-0218-48ad-9e63-ac2e408d2d32.rna_seq.transcriptome.gdc_realn.bam 13092771972 BAM transcriptome harmonized CPTAC3 aad3aedf-ad25-4d6c-b299-4b54e36e8fe1 c5589402f04ae816851b1b90f1397ab4 { 'aliquot_tag': 'ALQ_7295e943', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03212.RNA-Seq.transcriptome.T.hg38 C3N-03212 LUAD RNA-Seq tumor CPT0185230009 30beb182-316e-4f27-983c-c95d7cae3b90.rna_seq.transcriptome.gdc_realn.bam 11565219838 BAM transcriptome harmonized CPTAC3 bc7de4b2-7f8d-4793-bd94-0d761372a79b 4f69a031308fd5824d2665c94ced334d { 'aliquot_tag': 'ALQ_fdd51ce3', 'gdc_sample_type': 'Primary Tumor' } C3N-03212.WGS.A C3N-03212 LUAD WGS tissue_normal CPT0185250006 CPT0185250006.WholeGenome.RP-1303.bam 97920197583 BAM aligned CPTAC3 0a3e54a4-ea27-41a6-8013-e5cee8d8acfa 8cd7c81f8b90f8efb136b526b355cac4 { 'aliquot_tag': 'ALQ_e22af4d2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03212.WGS.A.hg38 C3N-03212 LUAD WGS tissue_normal CPT0185250006 b0dcebe1-2a7c-4b57-9103-daa736375506_wgs_gdc_realn.bam 145543588512 BAM harmonized CPTAC3 39a27b02-690a-4dd3-9046-3ef5289189b2 86d8413524a4d4e071f08ca96ffd25b5 { 'aliquot_tag': 'ALQ_e22af4d2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03212.WGS.N C3N-03212 LUAD WGS blood_normal CPT0185290002 CPT0185290002.WholeGenome.RP-1303.bam 103048902661 BAM aligned CPTAC3 6863aa6b-c1d9-4a49-a4d7-ed8308764ff5 e58b6ac1b87d3852cc34643bc51175e5 { 'aliquot_tag': 'ALQ_20b7ddca', 'gdc_sample_type': 'Blood Derived Normal' } @@ -34988,16 +37278,16 @@ C3N-03222.miRNA-Seq.A C3N-03222 LUAD miRNA-Seq tissue_normal CPT0179170008 19013 C3N-03222.miRNA-Seq.A.hg38 C3N-03222 LUAD miRNA-Seq tissue_normal CPT0179170008 4194ccd7-af0f-4764-9463-77617afe52f5_mirnaseq_gdc_realn.bam 252502803 BAM harmonized CPTAC3 77756e53-1545-49d3-aa1b-b1948d091b28 b8f41819b7ac6a914c560b3059e6201c { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03222.miRNA-Seq.T C3N-03222 LUAD miRNA-Seq tumor CPT0179140009 190130_UNC31-K00269_0188_BH2FGCBBXY_GTTTCG_S21_L006_R1_001.unaln.bam 169827738 BAM unaligned CPTAC3 df5be827-6274-4041-bf6a-fa57c19a9895 75567ae34b88cb9efb91c8b897582428 { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor' } C3N-03222.miRNA-Seq.T.hg38 C3N-03222 LUAD miRNA-Seq tumor CPT0179140009 2f23c7ea-134f-42fe-94ca-0ebe4475e531_mirnaseq_gdc_realn.bam 185070694 BAM harmonized CPTAC3 e7655853-2af8-4f0f-b0a3-dea71ddba454 2c8cf99e88d5d22fb2c3def09439b54f { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor' } -C3N-03222.RNA-Seq.chimeric.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 691a6009-c745-459f-a579-2abd2cdf2ad8.rna_seq.chimeric.gdc_realn.bam 319472771 BAM chimeric harmonized CPTAC3 76bb1948-dbe6-4ad2-b97a-d932e2d51528 eb1aaf2d578770c8c244fd8a09402049 { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03222.RNA-Seq.chimeric.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 6ca10182-9a10-409e-aeaa-fd68d20c3c8e.rna_seq.chimeric.gdc_realn.bam 47436879 BAM chimeric harmonized CPTAC3 b1f459e8-b404-4f6e-8094-484094671191 b914c4483d955d85845f1eee503e47c6 { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor' } -C3N-03222.RNA-Seq.genomic.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 691a6009-c745-459f-a579-2abd2cdf2ad8.rna_seq.genomic.gdc_realn.bam 6369326784 BAM genomic harmonized CPTAC3 3bc7db9d-a62c-4b34-8732-ba885784aa1c 09dfc683f03c845173633efddd4c10ec { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03222.RNA-Seq.genomic.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 6ca10182-9a10-409e-aeaa-fd68d20c3c8e.rna_seq.genomic.gdc_realn.bam 8930249906 BAM genomic harmonized CPTAC3 52cf3319-5b8e-4276-a548-d31a34bda759 336da7beab4d20ace084fa4dd1d82e37 { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor' } -C3N-03222.RNA-Seq.R1_L002.A C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L002_R1_001.fastq.gz 2835925840 FASTQ R1_L002 unaligned CPTAC3 792f6b68-bda6-433f-8f65-8e4be86cf50c 252c749cddc4d85c03819f2b239a2564 { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03222.RNA-Seq.R1_L006.T C3N-03222 LUAD RNA-Seq tumor CPT0179140009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L006_R1_001.fastq.gz 3854407920 FASTQ R1_L006 unaligned CPTAC3 c0834c76-fcc6-401f-9fac-37340fa7ff63 a9012b32ba1bf74fd04f837c6def6d1f { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor' } -C3N-03222.RNA-Seq.R2_L002.A C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L002_R2_001.fastq.gz 3043831856 FASTQ R2_L002 unaligned CPTAC3 29f0fe72-de72-4f11-8471-14b319c9702b 9cc8ef435aa0d6b94dd3f8e386cca77d { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03222.RNA-Seq.R2_L006.T C3N-03222 LUAD RNA-Seq tumor CPT0179140009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L006_R2_001.fastq.gz 4355889607 FASTQ R2_L006 unaligned CPTAC3 53e83de2-1ceb-4d09-a74c-c9da4e976c19 27fd0b01025ae0706fe3d5773779b910 { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor' } -C3N-03222.RNA-Seq.transcriptome.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 691a6009-c745-459f-a579-2abd2cdf2ad8.rna_seq.transcriptome.gdc_realn.bam 6294561014 BAM transcriptome harmonized CPTAC3 f125dffe-0b05-4365-a86f-2820b0244da9 eb0039ba16107a419c78e05a889ec5c0 { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03222.RNA-Seq.transcriptome.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 6ca10182-9a10-409e-aeaa-fd68d20c3c8e.rna_seq.transcriptome.gdc_realn.bam 9261302743 BAM transcriptome harmonized CPTAC3 7c8164df-8046-4b8e-b088-e091ce04829b 6ebe5e85f713be14efc9eea1870a8cb4 { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor' } +C3N-03222.RNA-Seq.chimeric.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 e6037dc0-d2a6-47c4-86f3-98ae6a2890a2.rna_seq.chimeric.gdc_realn.bam 319445876 BAM chimeric harmonized CPTAC3 786d5695-273d-48ce-8771-f4e4e60be4bc 602e867b622b3b375527a1094bea31a6 { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03222.RNA-Seq.chimeric.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 67565271-a5a4-48a6-865d-e862dd445f51.rna_seq.chimeric.gdc_realn.bam 47434448 BAM chimeric harmonized CPTAC3 c7853177-ab65-4d0d-9b6b-ee6740357edc be51aad60dae613202f26f5909a945f8 { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor' } +C3N-03222.RNA-Seq.genomic.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 e6037dc0-d2a6-47c4-86f3-98ae6a2890a2.rna_seq.genomic.gdc_realn.bam 6370148329 BAM genomic harmonized CPTAC3 a1152f62-9cda-431e-99bb-33e8e6ed538a 98a82b65f2c776ea27377abde3a57edf { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03222.RNA-Seq.genomic.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 67565271-a5a4-48a6-865d-e862dd445f51.rna_seq.genomic.gdc_realn.bam 8932097818 BAM genomic harmonized CPTAC3 1ac35540-2c5f-4e76-be58-cda0b958947a ec898847aa4827bc9362772f6dbe354b { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor' } +C3N-03222.RNA-Seq.R1_L002.A C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L002_R1_001.fastq.gz 2835925840 FASTQ R1_L002 unaligned CPTAC3 792f6b68-bda6-433f-8f65-8e4be86cf50c 252c749cddc4d85c03819f2b239a2564 { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-03222.RNA-Seq.R1_L006.T C3N-03222 LUAD RNA-Seq tumor CPT0179140009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L006_R1_001.fastq.gz 3854407920 FASTQ R1_L006 unaligned CPTAC3 c0834c76-fcc6-401f-9fac-37340fa7ff63 a9012b32ba1bf74fd04f837c6def6d1f { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03222.RNA-Seq.R2_L002.A C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 190201_UNC31-K00269_0189_AH3L7FBBXY_ATGTCA_S6_L002_R2_001.fastq.gz 3043831856 FASTQ R2_L002 unaligned CPTAC3 29f0fe72-de72-4f11-8471-14b319c9702b 9cc8ef435aa0d6b94dd3f8e386cca77d { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-03222.RNA-Seq.R2_L006.T C3N-03222 LUAD RNA-Seq tumor CPT0179140009 190201_UNC31-K00269_0190_BH3LFKBBXY_CGTACG_S3_L006_R2_001.fastq.gz 4355889607 FASTQ R2_L006 unaligned CPTAC3 53e83de2-1ceb-4d09-a74c-c9da4e976c19 27fd0b01025ae0706fe3d5773779b910 { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-03222.RNA-Seq.transcriptome.A.hg38 C3N-03222 LUAD RNA-Seq tissue_normal CPT0179170008 e6037dc0-d2a6-47c4-86f3-98ae6a2890a2.rna_seq.transcriptome.gdc_realn.bam 7119253924 BAM transcriptome harmonized CPTAC3 7b6fac1c-f783-4486-8c20-d27047090f1b 58ccb9bdfbf26d1956e771a1141df723 { 'aliquot_tag': 'ALQ_e74680c3', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03222.RNA-Seq.transcriptome.T.hg38 C3N-03222 LUAD RNA-Seq tumor CPT0179140009 67565271-a5a4-48a6-865d-e862dd445f51.rna_seq.transcriptome.gdc_realn.bam 10345582557 BAM transcriptome harmonized CPTAC3 52820dfe-ac50-4e61-ba40-c3b52886ca8a 8f6641f09dec9dbf4d494d3e153dfc4a { 'aliquot_tag': 'ALQ_d7e1ca85', 'gdc_sample_type': 'Primary Tumor' } C3N-03222.WGS.N C3N-03222 LUAD WGS blood_normal CPT0179260002 CPT0179260002.WholeGenome.RP-1303.bam 108708819593 BAM aligned CPTAC3 af2a62c5-ebc9-49ee-9f32-9050163a79c3 15036f84af744a931627255f4ce4e0fb { 'aliquot_tag': 'ALQ_bc6732c3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03222.WGS.N.hg38 C3N-03222 LUAD WGS blood_normal CPT0179260002 28e97771-3bef-407b-9870-47d5cfee49b4_wgs_gdc_realn.bam 159064453363 BAM harmonized CPTAC3 5eb9110a-e4da-47b3-ba6e-f3df28598241 fbdff5351c14a66f45fe29410831e9ad { 'aliquot_tag': 'ALQ_bc6732c3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03222.WGS.T C3N-03222 LUAD WGS tumor CPT0179140006 CPT0179140006.WholeGenome.RP-1303.bam 113654482621 BAM aligned CPTAC3 dc3bdaa1-d595-4c5d-9806-ea84d32c0387 2111ac5be6e6e9f1bb5b7e1df8b2a6ce { 'aliquot_tag': 'ALQ_475ed714', 'gdc_sample_type': 'Primary Tumor' } @@ -35014,11 +37304,11 @@ C3N-03225.MethArray.Red.A C3N-03225 LUAD Methylation Array tissue_normal CPT0191 C3N-03225.MethArray.Red.T C3N-03225 LUAD Methylation Array tumor CPT0191570006 203561620095_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 00f26457-1e61-4bed-bedc-787c3821d8fb 830f5afa5fe4fde5b950c83cdd9cd85f { 'aliquot_tag': 'ALQ_bd0ab387', 'gdc_sample_type': 'Primary Tumor' } C3N-03225.miRNA-Seq.T C3N-03225 LUAD miRNA-Seq tumor CPT0191570009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACCGG_S46_L004_R1_001.unaln.bam 203106095 BAM unaligned CPTAC3 9b9d0d43-defc-4dcb-a903-8119e985df33 a915514b75ec605adc92854d2123624c { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor' } C3N-03225.miRNA-Seq.T.hg38 C3N-03225 LUAD miRNA-Seq tumor CPT0191570009 d7bd3002-bb3d-48f5-9ea6-0167b9a632d6_mirnaseq_gdc_realn.bam 224384268 BAM harmonized CPTAC3 aa64caa5-ef95-4ed0-a973-6674cdf2ab3f 95aed854e548c0e2ce611be618f832a2 { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor' } -C3N-03225.RNA-Seq.chimeric.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 d9c3c307-1f97-4efe-9814-b42330cf955e.rna_seq.chimeric.gdc_realn.bam 47426336 BAM chimeric harmonized CPTAC3 59c0c437-3994-4953-86ba-4356d5b8247a 9999a5e5e799ed8eafbaf807cda70239 { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor' } -C3N-03225.RNA-Seq.genomic.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 d9c3c307-1f97-4efe-9814-b42330cf955e.rna_seq.genomic.gdc_realn.bam 10979980297 BAM genomic harmonized CPTAC3 bf21b10c-bd9d-4586-b0c6-1de593d536d2 58a7f1e3f9c4514faf957473b2f77cfd { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor' } -C3N-03225.RNA-Seq.R1_L007.T C3N-03225 LUAD RNA-Seq tumor CPT0191570009 190604_UNC32-K00270_0177_AH7F5VBBXY_TTACAGGA-TGACAAGC_S26_L007_R1_001.fastq.gz 4012128500 FASTQ R1_L007 unaligned CPTAC3 c7ac4fd6-6579-4ff7-a7f4-0cf092ea97d1 fcd9cd0a8f784bd3eaa47f0a9178008e { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor' } -C3N-03225.RNA-Seq.R2_L007.T C3N-03225 LUAD RNA-Seq tumor CPT0191570009 190604_UNC32-K00270_0177_AH7F5VBBXY_TTACAGGA-TGACAAGC_S26_L007_R2_001.fastq.gz 4474190291 FASTQ R2_L007 unaligned CPTAC3 f32ff77c-b1e3-41fe-9996-9bed1ed8742a 7979d6625dce1a7b608fb9e49d2b6b6e { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor' } -C3N-03225.RNA-Seq.transcriptome.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 d9c3c307-1f97-4efe-9814-b42330cf955e.rna_seq.transcriptome.gdc_realn.bam 8043287564 BAM transcriptome harmonized CPTAC3 250bb0d4-00b6-40ce-b8b7-18dc0c73a5d2 eb483ea46398a164c7026507b41bdb4f { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor' } +C3N-03225.RNA-Seq.chimeric.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 dac3ff39-1b87-4be4-8d11-a50e2356e189.rna_seq.chimeric.gdc_realn.bam 47426715 BAM chimeric harmonized CPTAC3 12618c88-39ce-4e35-8a32-27e883c1a927 fe8c51a381b0912b099778806db6844b { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor' } +C3N-03225.RNA-Seq.genomic.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 dac3ff39-1b87-4be4-8d11-a50e2356e189.rna_seq.genomic.gdc_realn.bam 10981323545 BAM genomic harmonized CPTAC3 63f346a1-4110-4787-a893-986528433509 6fe2a473dd1aecd4657d2fab302cd09b { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor' } +C3N-03225.RNA-Seq.R1_L007.T C3N-03225 LUAD RNA-Seq tumor CPT0191570009 190604_UNC32-K00270_0177_AH7F5VBBXY_TTACAGGA-TGACAAGC_S26_L007_R1_001.fastq.gz 4012128500 FASTQ R1_L007 unaligned CPTAC3 c7ac4fd6-6579-4ff7-a7f4-0cf092ea97d1 fcd9cd0a8f784bd3eaa47f0a9178008e { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03225.RNA-Seq.R2_L007.T C3N-03225 LUAD RNA-Seq tumor CPT0191570009 190604_UNC32-K00270_0177_AH7F5VBBXY_TTACAGGA-TGACAAGC_S26_L007_R2_001.fastq.gz 4474190291 FASTQ R2_L007 unaligned CPTAC3 f32ff77c-b1e3-41fe-9996-9bed1ed8742a 7979d6625dce1a7b608fb9e49d2b6b6e { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03225.RNA-Seq.transcriptome.T.hg38 C3N-03225 LUAD RNA-Seq tumor CPT0191570009 dac3ff39-1b87-4be4-8d11-a50e2356e189.rna_seq.transcriptome.gdc_realn.bam 8991275655 BAM transcriptome harmonized CPTAC3 98355be6-e599-4203-b0e3-8d87a2a9a66a 2292ee622b3c58e67f7e8c2d6b29e707 { 'aliquot_tag': 'ALQ_2db5ae16', 'gdc_sample_type': 'Primary Tumor' } C3N-03225.WGS.N C3N-03225 LUAD WGS blood_normal CPT0193270002 CPT0193270002.WholeGenome.RP-1303.bam 78573255202 BAM aligned CPTAC3 c443432b-4168-4781-b03a-1bd87acba675 2e8071719ec5c4d92461f794d76a878c { 'aliquot_tag': 'ALQ_30fd560f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03225.WGS.N.hg38 C3N-03225 LUAD WGS blood_normal CPT0193270002 83e0ecc7-e856-40e6-abd9-f5bc5377442d_wgs_gdc_realn.bam 115388705849 BAM harmonized CPTAC3 ed9f5f70-e453-4995-b7de-5f2ac584207a 3108b23926863e0cbc22c2e78d3dce0d { 'aliquot_tag': 'ALQ_30fd560f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03225.WGS.T C3N-03225 LUAD WGS tumor CPT0191570006 CPT0191570006.WholeGenome.RP-1303.bam 65733495847 BAM aligned CPTAC3 1460c894-60c6-4cf7-a0ba-9541428e7e22 6ce24f3d68c3f99c1e4e697c01178978 { 'aliquot_tag': 'ALQ_bd0ab387', 'gdc_sample_type': 'Primary Tumor' } @@ -35039,18 +37329,24 @@ C3N-03226.miRNA-Seq.T C3N-03226 HNSCC miRNA-Seq tumor CPT0194420013 190228_UNC32 C3N-03226.miRNA-Seq.T.hg38 C3N-03226 HNSCC miRNA-Seq tumor CPT0194420013 ffb76a0a-0389-40f3-91d2-f90311de734b_mirnaseq_gdc_realn.bam 223332790 BAM harmonized CPTAC3 bc1c46fd-6eaa-456c-909d-d0aa1721a4b7 c2c900d2073946110d63ad17d404e320 { 'aliquot_tag': 'ALQ_85ff053b', 'gdc_sample_type': 'Primary Tumor' } C3N-03226.RNA-Seq.chimeric.A.hg38 C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 5c790ebb-b618-4c3b-8b4c-e3b17e343629.rna_seq.chimeric.gdc_realn.bam 232497609 BAM chimeric harmonized CPTAC3 52a0de48-6258-4040-890c-c12f06c4fb55 7eb576ba2afc012c34d3d8a2cac40217 { 'aliquot_tag': 'ALQ_63ce3555', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03226.RNA-Seq.chimeric.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 bf684da4-4753-42a5-bc5c-991db9bdb8f9.rna_seq.chimeric.gdc_realn.bam 165316392 BAM chimeric harmonized CPTAC3 9e1ef9aa-dce3-4f5d-8735-9b39ac24c2e6 176de5cfb3f5f1e467b157554815a1a8 { 'aliquot_tag': 'ALQ_85ff053b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03226.RNA-Seq.genomic.A.hg38 C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 5c790ebb-b618-4c3b-8b4c-e3b17e343629.rna_seq.genomic.gdc_realn.bam 7364502693 BAM genomic harmonized CPTAC3 7d7aa754-211e-4964-a9f6-39c3aaecbcfa 75bcd03bc38a1e1fbc2d37a78704717b { 'aliquot_tag': 'ALQ_63ce3555', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03226.RNA-Seq.genomic.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 bf684da4-4753-42a5-bc5c-991db9bdb8f9.rna_seq.genomic.gdc_realn.bam 8067981694 BAM genomic harmonized CPTAC3 8f4ac9f6-0790-4f0e-8b54-66b744ea67c5 dfb6f07e98ba31ac00f061ed8a6ad1b2 { 'aliquot_tag': 'ALQ_85ff053b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03226.RNA-Seq.R1_L005.A C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTTTCG_S19_L005_R1_001.fastq.gz 3337682029 FASTQ R1_L005 unaligned CPTAC3 4b11c02d-2d13-4ffe-a059-a46a13014c83 8f169bb34d7ee902f1214cfd10ad3530 { 'aliquot_tag': 'ALQ_63ce3555', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03226.RNA-Seq.R1_L008.T C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L008_R1_001.fastq.gz 3751670872 FASTQ R1_L008 unaligned CPTAC3 4decb474-0fad-43d5-afb4-cc2bfd005db0 2bb1cfadea0634ba032313fa80c1334f { 'aliquot_tag': 'ALQ_85ff053b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03226.RNA-Seq.R1_.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 20210714_P1_D10_WB7988_plate1_S46_R1_001.fastq.gz 5112067959 FASTQ R1_ unaligned CPTAC3 6f752364-f87a-410a-8512-db763c674b86 1e241cf7f69b57f2aef8b95cef583ad8 { 'aliquot_tag': 'ALQ_9e71c2d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03226.RNA-Seq.R1_.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 20210729_P3_G11_WB7988-Plate3_S83_R1_001.fastq.gz 5781448110 FASTQ R1_ unaligned CPTAC3 76f9991e-87af-468f-b1fa-b2b274c8ae91 165e7f35bdd57b38e61c274871fcbf35 { 'aliquot_tag': 'ALQ_707fa3fb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03226.RNA-Seq.R2_L005.A C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTTTCG_S19_L005_R2_001.fastq.gz 3798138932 FASTQ R2_L005 unaligned CPTAC3 596e4a21-29ea-47bc-acf9-65a113623de6 ec89cd533a6ad19cfe5339adadf972b3 { 'aliquot_tag': 'ALQ_63ce3555', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03226.RNA-Seq.R2_L008.T C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L008_R2_001.fastq.gz 4236361947 FASTQ R2_L008 unaligned CPTAC3 2041837d-d9c8-4926-82ba-1e45620b9459 16cd7f4bf86d479c46101edfdae2af59 { 'aliquot_tag': 'ALQ_85ff053b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03226.RNA-Seq.R2_.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 20210714_P1_D10_WB7988_plate1_S46_R2_001.fastq.gz 6309454142 FASTQ R2_ unaligned CPTAC3 3406a254-a751-47ab-9d61-aa21767cc1b9 0da84b011069310e0bd735f3151805d2 { 'aliquot_tag': 'ALQ_9e71c2d7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03226.RNA-Seq.R2_.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 20210729_P3_G11_WB7988-Plate3_S83_R2_001.fastq.gz 5971307518 FASTQ R2_ unaligned CPTAC3 16dc21a3-1cd9-412f-8728-96ae5855ffee 49b7f1b1643dba0a4091f74a5bc11422 { 'aliquot_tag': 'ALQ_707fa3fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03226.RNA-Seq.chimeric.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 028311d8-11c1-409c-975c-2c1694bd8788.rna_seq.chimeric.gdc_realn.bam 27552740 BAM chimeric harmonized CPTAC3 e87ec417-cea2-43aa-98bd-1fe6d82f4a75 62693be15e53ba24a24847af10ef12ce { 'aliquot_tag': 'ALQ_9e71c2d7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03226.RNA-Seq.chimeric.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 624c6fdb-d67c-41bc-81d9-f22d97f773a7.rna_seq.chimeric.gdc_realn.bam 155378516 BAM chimeric harmonized CPTAC3 f45ea8c4-4ab1-44d3-8d1f-22c43d728f64 e83a6dc5a83b5b4e58ec29a9f000f8af { 'aliquot_tag': 'ALQ_707fa3fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03226.RNA-Seq.genomic.A.hg38 C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 5c790ebb-b618-4c3b-8b4c-e3b17e343629.rna_seq.genomic.gdc_realn.bam 7364502693 BAM genomic harmonized CPTAC3 efd07ae7-5c16-40b3-81dc-c94c6a8f1b5c 75bcd03bc38a1e1fbc2d37a78704717b { 'aliquot_tag': 'ALQ_63ce3555', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03226.RNA-Seq.genomic.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 bf684da4-4753-42a5-bc5c-991db9bdb8f9.rna_seq.genomic.gdc_realn.bam 8067981694 BAM genomic harmonized CPTAC3 42758160-3ad8-46fe-af42-3b3b8a6d5830 dfb6f07e98ba31ac00f061ed8a6ad1b2 { 'aliquot_tag': 'ALQ_85ff053b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03226.RNA-Seq.genomic.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 028311d8-11c1-409c-975c-2c1694bd8788.rna_seq.genomic.gdc_realn.bam 11636148223 BAM genomic harmonized CPTAC3 f661b426-e37e-4819-9911-f29852fdf1cd 7b688c1c36c24efad4489a1d2db4350a { 'aliquot_tag': 'ALQ_9e71c2d7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03226.RNA-Seq.genomic.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 624c6fdb-d67c-41bc-81d9-f22d97f773a7.rna_seq.genomic.gdc_realn.bam 7868796328 BAM genomic harmonized CPTAC3 0d537fcd-7694-4997-8307-dc086585ded0 6a128d2ba41eef56063bce2838f07e56 { 'aliquot_tag': 'ALQ_707fa3fb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03226.RNA-Seq.R1_L005.A C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTTTCG_S19_L005_R1_001.fastq.gz 3337682029 FASTQ R1_L005 unaligned CPTAC3 4b11c02d-2d13-4ffe-a059-a46a13014c83 8f169bb34d7ee902f1214cfd10ad3530 { 'aliquot_tag': 'ALQ_63ce3555', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03226.RNA-Seq.R1_L008.T C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L008_R1_001.fastq.gz 3751670872 FASTQ R1_L008 unaligned CPTAC3 4decb474-0fad-43d5-afb4-cc2bfd005db0 2bb1cfadea0634ba032313fa80c1334f { 'aliquot_tag': 'ALQ_85ff053b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03226.RNA-Seq.R2_L005.A C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTTTCG_S19_L005_R2_001.fastq.gz 3798138932 FASTQ R2_L005 unaligned CPTAC3 596e4a21-29ea-47bc-acf9-65a113623de6 ec89cd533a6ad19cfe5339adadf972b3 { 'aliquot_tag': 'ALQ_63ce3555', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03226.RNA-Seq.R2_L008.T C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L008_R2_001.fastq.gz 4236361947 FASTQ R2_L008 unaligned CPTAC3 2041837d-d9c8-4926-82ba-1e45620b9459 16cd7f4bf86d479c46101edfdae2af59 { 'aliquot_tag': 'ALQ_85ff053b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03226.RNA-Seq.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 20210714_P1_D10_WB7988_plate1_S46_R1_001.fastq.gz 5112067959 FASTQ unaligned CPTAC3 6f752364-f87a-410a-8512-db763c674b86 1e241cf7f69b57f2aef8b95cef583ad8 +C3N-03226.RNA-Seq.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 20210714_P1_D10_WB7988_plate1_S46_R2_001.fastq.gz 6309454142 FASTQ unaligned CPTAC3 3406a254-a751-47ab-9d61-aa21767cc1b9 0da84b011069310e0bd735f3151805d2 +C3N-03226.RNA-Seq.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 20210729_P3_G11_WB7988-Plate3_S83_R1_001.fastq.gz 5781448110 FASTQ unaligned CPTAC3 76f9991e-87af-468f-b1fa-b2b274c8ae91 165e7f35bdd57b38e61c274871fcbf35 +C3N-03226.RNA-Seq.T C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 20210729_P3_G11_WB7988-Plate3_S83_R2_001.fastq.gz 5971307518 FASTQ unaligned CPTAC3 16dc21a3-1cd9-412f-8728-96ae5855ffee 49b7f1b1643dba0a4091f74a5bc11422 C3N-03226.RNA-Seq.transcriptome.A.hg38 C3N-03226 HNSCC RNA-Seq tissue_normal CPT0194440006 5c790ebb-b618-4c3b-8b4c-e3b17e343629.rna_seq.transcriptome.gdc_realn.bam 10217225460 BAM transcriptome harmonized CPTAC3 4f0cb60f-9f9f-4b25-9b24-9a6823ce62b4 c9286e90ae0d921570728f17ba53d627 { 'aliquot_tag': 'ALQ_63ce3555', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03226.RNA-Seq.transcriptome.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194420013 bf684da4-4753-42a5-bc5c-991db9bdb8f9.rna_seq.transcriptome.gdc_realn.bam 11970378937 BAM transcriptome harmonized CPTAC3 9854edd5-ced4-4a18-a063-83df8b3ffb56 92ee54c727246b9279b3ce06b13714b0 { 'aliquot_tag': 'ALQ_85ff053b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03226.RNA-Seq.transcriptome.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460011 028311d8-11c1-409c-975c-2c1694bd8788.rna_seq.transcriptome.gdc_realn.bam 9495132097 BAM transcriptome harmonized CPTAC3 1c40fccf-bb01-4019-bf33-3b64d8e58c81 a913525e0897521caa1945bb3f1e7141 { 'aliquot_tag': 'ALQ_9e71c2d7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03226.RNA-Seq.transcriptome.T.hg38 C3N-03226 HNSCC RNA-Seq tumor CPT0194460013 624c6fdb-d67c-41bc-81d9-f22d97f773a7.rna_seq.transcriptome.gdc_realn.bam 7479534732 BAM transcriptome harmonized CPTAC3 b98b898b-9c11-4f8d-acd7-bef7c0efceae 6ddf7f4f9c4c7ffe593870ee2d7372e3 { 'aliquot_tag': 'ALQ_707fa3fb', 'gdc_sample_type': 'Primary Tumor' } C3N-03226.WGS.N C3N-03226 HNSCC WGS blood_normal CPT0194530002 CPT0194530002.WholeGenome.RP-1303.bam 83787425758 BAM aligned CPTAC3 acfb912c-3207-47e9-b6a4-e23bb9484be9 1f566c2209472fdbd26176d71636f042 { 'aliquot_tag': 'ALQ_1ddffef9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03226.WGS.N.hg38 C3N-03226 HNSCC WGS blood_normal CPT0194530002 8de2dbc8-c6e1-4920-877f-00ac954e87cc_wgs_gdc_realn.bam 120821825260 BAM harmonized CPTAC3 e82e4a19-d2b0-4e3e-96f2-f31efa5e939d 24666c6c6a1512f851cbaf0af81ce8a0 { 'aliquot_tag': 'ALQ_1ddffef9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03226.WGS.T C3N-03226 HNSCC WGS tumor CPT0194420009 CPT0194420009.WholeGenome.RP-1303.bam 85835402790 BAM aligned CPTAC3 bd36e052-f33d-4dec-85f4-20e2b6121097 5780e918f8102b67d637f08f3a178278 { 'aliquot_tag': 'ALQ_7c31dd64', 'gdc_sample_type': 'Primary Tumor' } @@ -35065,11 +37361,11 @@ C3N-03230.MethArray.Green.T C3N-03230 SAR Methylation Array tumor CPT0180420006 C3N-03230.MethArray.Red.T C3N-03230 SAR Methylation Array tumor CPT0180420006 203027390034_R06C01_Red.idat 13676226 IDAT Red NA CPTAC3 794eb51e-10db-4211-bb49-4078d7804696 a472a100d567ed2bf3a014ba2c3d4de3 { 'aliquot_tag': 'ALQ_d46be478', 'gdc_sample_type': 'Primary Tumor' } C3N-03230.miRNA-Seq.T C3N-03230 SAR miRNA-Seq tumor CPT0180420009 181119_UNC31-K00269_0165_AH27WCBBXY_GTTTCG_S45_L002_R1_001.unaln.bam 202860230 BAM unaligned CPTAC3 cfc9d0a5-d6c6-4071-ac49-a2ddc0f904b8 39a8cd71457b092691241082d2c21683 { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor' } C3N-03230.miRNA-Seq.T.hg38 C3N-03230 SAR miRNA-Seq tumor CPT0180420009 4d81c5c1-a4f5-4e63-befc-06078482822c_mirnaseq_gdc_realn.bam 231945075 BAM harmonized CPTAC3 00399bbf-ddec-4b7b-843c-915a9f7baa49 764bbf531fbda16893f32b46865ca8a6 { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03230.RNA-Seq.chimeric.T.hg38 C3N-03230 SAR RNA-Seq tumor CPT0180420009 2262b38e-8957-46c6-9844-e54fbce60574.rna_seq.chimeric.gdc_realn.bam 43005673 BAM chimeric harmonized CPTAC3 9af26a3c-f663-4f00-868c-30ecd9aef2fe 27226eb97c5b355dbd889569baf9a81c { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03230.RNA-Seq.genomic.T.hg38 C3N-03230 SAR RNA-Seq tumor CPT0180420009 2262b38e-8957-46c6-9844-e54fbce60574.rna_seq.genomic.gdc_realn.bam 9564497948 BAM genomic harmonized CPTAC3 e2dda68e-946e-407d-8e79-f1925a68ff23 4b1d16a6513dd02fddc1324671f189ee { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03230.RNA-Seq.R1_L006.T C3N-03230 SAR RNA-Seq tumor CPT0180420009 180516_UNC31-K00269_0130_BHV22JBBXX_CGTACG_S23_L006_R1_001.fastq.gz 4411942338 FASTQ R1_L006 unaligned CPTAC3 b939816b-b6d7-4e00-a367-ae3d0899d1d0 9829f8d14044dd9aef315f7001014b2d { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03230.RNA-Seq.R2_L006.T C3N-03230 SAR RNA-Seq tumor CPT0180420009 180516_UNC31-K00269_0130_BHV22JBBXX_CGTACG_S23_L006_R2_001.fastq.gz 4837089707 FASTQ R2_L006 unaligned CPTAC3 07992eb1-9a08-49bf-98d1-27178c8db00d 19d876c3fceede242464a3391e109da0 { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor' } -C3N-03230.RNA-Seq.transcriptome.T.hg38 C3N-03230 SAR RNA-Seq tumor CPT0180420009 2262b38e-8957-46c6-9844-e54fbce60574.rna_seq.transcriptome.gdc_realn.bam 11595628835 BAM transcriptome harmonized CPTAC3 dc7cd287-d653-4d01-af37-fb0a063ed17c 21b03a12315e849204db9bc677e7f540 { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03230.RNA-Seq.chimeric.T.hg38 C3N-03230 SAR RNA-Seq tumor CPT0180420009 249cadf3-8d8e-4ee0-8f43-c99f71edfe68.rna_seq.chimeric.gdc_realn.bam 42993587 BAM chimeric harmonized CPTAC3 24c94ce5-4702-46af-8ab9-dad0b8ab4894 154315b0322f2797ce4a63facec861a6 { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03230.RNA-Seq.genomic.T.hg38 C3N-03230 SAR RNA-Seq tumor CPT0180420009 249cadf3-8d8e-4ee0-8f43-c99f71edfe68.rna_seq.genomic.gdc_realn.bam 9566522292 BAM genomic harmonized CPTAC3 77ab5bcf-d706-49b7-87b0-dc8d321ecb0d 099d1dd2883b1044c17b88522e7a3421 { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor' } +C3N-03230.RNA-Seq.R1_L006.T C3N-03230 SAR RNA-Seq tumor CPT0180420009 180516_UNC31-K00269_0130_BHV22JBBXX_CGTACG_S23_L006_R1_001.fastq.gz 4411942338 FASTQ R1_L006 unaligned CPTAC3 b939816b-b6d7-4e00-a367-ae3d0899d1d0 9829f8d14044dd9aef315f7001014b2d { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03230.RNA-Seq.R2_L006.T C3N-03230 SAR RNA-Seq tumor CPT0180420009 180516_UNC31-K00269_0130_BHV22JBBXX_CGTACG_S23_L006_R2_001.fastq.gz 4837089707 FASTQ R2_L006 unaligned CPTAC3 07992eb1-9a08-49bf-98d1-27178c8db00d 19d876c3fceede242464a3391e109da0 { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-03230.RNA-Seq.transcriptome.T.hg38 C3N-03230 SAR RNA-Seq tumor CPT0180420009 249cadf3-8d8e-4ee0-8f43-c99f71edfe68.rna_seq.transcriptome.gdc_realn.bam 13117603227 BAM transcriptome harmonized CPTAC3 5133e5ab-6f3f-43cf-809c-dfe15241273d 4db89a6d22146805dd289c88176a936e { 'aliquot_tag': 'ALQ_44d4f9e9', 'gdc_sample_type': 'Primary Tumor' } C3N-03230.WGS.A C3N-03230 SAR WGS tissue_normal CPT0180440006 CPT0180440006.WholeGenome.RP-1303.bam 60227065173 BAM aligned CPTAC3 809124af-1a73-433c-b9c2-b63c20b6c9ba 3bd38a65e28210f82eaffc6cd9eaae91 { 'aliquot_tag': 'ALQ_5b2b11d8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03230.WGS.A.hg38 C3N-03230 SAR WGS tissue_normal CPT0180440006 18f767a1-e405-439b-ae72-0b744eedceac_wgs_gdc_realn.bam 88171561722 BAM harmonized CPTAC3 75f8ec9c-61c9-461b-8717-1038524de38b e854e154db0922f981129518dce88100 { 'aliquot_tag': 'ALQ_5b2b11d8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03230.WGS.N C3N-03230 SAR WGS blood_normal CPT0180530002 CPT0180530002.WholeGenome.RP-1303.bam 63072421093 BAM aligned CPTAC3 ec2f2bde-522a-4a88-b32f-f0d8aaf086c2 145bacbae6def10843329a25aa4dddb8 { 'aliquot_tag': 'ALQ_253ada74', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35090,16 +37386,16 @@ C3N-03233.miRNA-Seq.A C3N-03233 LUAD miRNA-Seq tissue_normal CPT0180740009 19013 C3N-03233.miRNA-Seq.A.hg38 C3N-03233 LUAD miRNA-Seq tissue_normal CPT0180740009 4a6a178a-0fa1-4348-9f10-fafa4606af97_mirnaseq_gdc_realn.bam 224994182 BAM harmonized CPTAC3 614dbbf1-edbc-443d-a002-3acfcb125080 6d98b6848703c2bd8dcb2370a8103fc8 { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03233.miRNA-Seq.T C3N-03233 LUAD miRNA-Seq tumor CPT0180730009 190130_UNC31-K00269_0188_BH2FGCBBXY_TCATTC_S45_L007_R1_001.unaln.bam 181656693 BAM unaligned CPTAC3 41d81d94-710f-4f0f-9adf-b97fa886cd97 e3cc82e75e109aabff92b714790a6e00 { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor' } C3N-03233.miRNA-Seq.T.hg38 C3N-03233 LUAD miRNA-Seq tumor CPT0180730009 6ab746e5-c9e0-47e8-889b-3e06f70bb9c4_mirnaseq_gdc_realn.bam 198334621 BAM harmonized CPTAC3 a650acb6-4da2-4732-8844-192b4b83cfdc 58bc1c3d93041797e256b9a6095be4f4 { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03233.RNA-Seq.chimeric.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 a34363d5-d7df-48c6-aac1-a160e81575a7.rna_seq.chimeric.gdc_realn.bam 209217192 BAM chimeric harmonized CPTAC3 762a361f-88f0-4ed2-9b8f-ef05c3094f2b 34209be85d3dd7e611c658a7004effb5 { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03233.RNA-Seq.chimeric.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 dfc46ec9-900e-4fa6-8683-2c374af35eea.rna_seq.chimeric.gdc_realn.bam 56570908 BAM chimeric harmonized CPTAC3 c896e57c-57c9-4732-8069-26122c56f6e5 0180ac0b9d12eb70a8e19372f928921d { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03233.RNA-Seq.genomic.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 a34363d5-d7df-48c6-aac1-a160e81575a7.rna_seq.genomic.gdc_realn.bam 6538105062 BAM genomic harmonized CPTAC3 8e972616-db23-41ef-a2fd-f5f05e32b2a3 f0b5dec9bfee1ece749435a251f76cba { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03233.RNA-Seq.genomic.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 dfc46ec9-900e-4fa6-8683-2c374af35eea.rna_seq.genomic.gdc_realn.bam 10093072993 BAM genomic harmonized CPTAC3 41967398-eae4-4520-af69-fe8422cdc9f8 b4b23d55e388cf3d19af19530a710407 { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03233.RNA-Seq.R1_L002.A C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L002_R1_001.fastq.gz 2969720597 FASTQ R1_L002 unaligned CPTAC3 9f50a476-f013-4261-8add-8414f62ddc93 8f00b2ad398359333fa069b3e0dda95b { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03233.RNA-Seq.R1_L006.T C3N-03233 LUAD RNA-Seq tumor CPT0180730009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGTACG_S22_L006_R1_001.fastq.gz 4398868393 FASTQ R1_L006 unaligned CPTAC3 ab692eb9-6f56-495b-8ba5-5c472daa1a88 4bee877dcf1d2f362ca6f98c796ecb01 { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03233.RNA-Seq.R2_L002.A C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L002_R2_001.fastq.gz 2950322321 FASTQ R2_L002 unaligned CPTAC3 1b6ffd9d-8602-402e-b67b-d7a7ce0ac722 ea921770be9fa73680cf22d8ede2638e { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03233.RNA-Seq.R2_L006.T C3N-03233 LUAD RNA-Seq tumor CPT0180730009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGTACG_S22_L006_R2_001.fastq.gz 4853859544 FASTQ R2_L006 unaligned CPTAC3 e29e0ecb-5dac-4434-964a-490376a85281 8f4b0a6007e26fa002468729a53ddf23 { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03233.RNA-Seq.transcriptome.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 a34363d5-d7df-48c6-aac1-a160e81575a7.rna_seq.transcriptome.gdc_realn.bam 5788954626 BAM transcriptome harmonized CPTAC3 5b751fda-703a-47cb-9641-dd542cc97b7c 263caeaa1d53de48c60022450228aa25 { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03233.RNA-Seq.transcriptome.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 dfc46ec9-900e-4fa6-8683-2c374af35eea.rna_seq.transcriptome.gdc_realn.bam 8802746284 BAM transcriptome harmonized CPTAC3 27e4140b-2290-484e-a531-7e03afea4013 b2370101fe4051e5faf866df12981718 { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03233.RNA-Seq.chimeric.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 9fe8a9eb-ee3c-4c10-8f5f-01e120c43b6f.rna_seq.chimeric.gdc_realn.bam 209193687 BAM chimeric harmonized CPTAC3 8d5def53-65f6-4680-8eba-8c549ed2b004 9a42fb53d5d9adacc5354c969ea269f4 { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03233.RNA-Seq.chimeric.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 eae9027b-5bdc-48ed-845a-4743128f8adf.rna_seq.chimeric.gdc_realn.bam 56558535 BAM chimeric harmonized CPTAC3 228dea37-aa56-4085-bc2a-0c00afefca49 5b35844656bd8c5149513a0377c2ed4a { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03233.RNA-Seq.genomic.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 9fe8a9eb-ee3c-4c10-8f5f-01e120c43b6f.rna_seq.genomic.gdc_realn.bam 6539163199 BAM genomic harmonized CPTAC3 fa1444cd-c008-4a3f-8f8c-c1a737e5f782 3421ea16c8600a31d54aa86a9bf78ba6 { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03233.RNA-Seq.genomic.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 eae9027b-5bdc-48ed-845a-4743128f8adf.rna_seq.genomic.gdc_realn.bam 10094018077 BAM genomic harmonized CPTAC3 2581d791-5743-48fb-826e-38020a9f2431 1227d7a2cbb8ed9591866eb26369be94 { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03233.RNA-Seq.R1_L002.A C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L002_R1_001.fastq.gz 2969720597 FASTQ R1_L002 unaligned CPTAC3 9f50a476-f013-4261-8add-8414f62ddc93 8f00b2ad398359333fa069b3e0dda95b { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-03233.RNA-Seq.R1_L006.T C3N-03233 LUAD RNA-Seq tumor CPT0180730009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGTACG_S22_L006_R1_001.fastq.gz 4398868393 FASTQ R1_L006 unaligned CPTAC3 ab692eb9-6f56-495b-8ba5-5c472daa1a88 4bee877dcf1d2f362ca6f98c796ecb01 { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03233.RNA-Seq.R2_L002.A C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 190201_UNC31-K00269_0189_AH3L7FBBXY_CCGTCC_S8_L002_R2_001.fastq.gz 2950322321 FASTQ R2_L002 unaligned CPTAC3 1b6ffd9d-8602-402e-b67b-d7a7ce0ac722 ea921770be9fa73680cf22d8ede2638e { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-03233.RNA-Seq.R2_L006.T C3N-03233 LUAD RNA-Seq tumor CPT0180730009 190131_UNC32-K00270_0142_BH3LFYBBXY_CGTACG_S22_L006_R2_001.fastq.gz 4853859544 FASTQ R2_L006 unaligned CPTAC3 e29e0ecb-5dac-4434-964a-490376a85281 8f4b0a6007e26fa002468729a53ddf23 { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-03233.RNA-Seq.transcriptome.A.hg38 C3N-03233 LUAD RNA-Seq tissue_normal CPT0180740009 9fe8a9eb-ee3c-4c10-8f5f-01e120c43b6f.rna_seq.transcriptome.gdc_realn.bam 6503589886 BAM transcriptome harmonized CPTAC3 7c2e6772-5f41-4c2a-bef4-03bdde88d581 29e55ffe0165ce5c1192d34555af27e7 { 'aliquot_tag': 'ALQ_4d007ee7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03233.RNA-Seq.transcriptome.T.hg38 C3N-03233 LUAD RNA-Seq tumor CPT0180730009 eae9027b-5bdc-48ed-845a-4743128f8adf.rna_seq.transcriptome.gdc_realn.bam 9946907669 BAM transcriptome harmonized CPTAC3 1ed28dbf-0652-482f-9e9f-fd58f0e82fc9 f00d575292d56df6ac9901f0946e99f5 { 'aliquot_tag': 'ALQ_ff20a2f7', 'gdc_sample_type': 'Primary Tumor' } C3N-03233.WGS.N C3N-03233 LUAD WGS blood_normal CPT0180830002 CPT0180830002.WholeGenome.RP-1303.bam 61241495192 BAM aligned CPTAC3 f518d261-79d4-4d57-8273-2b8f37fa89a9 9f4d695e3651ba5ecc923434f583778b { 'aliquot_tag': 'ALQ_99a4c9aa', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03233.WGS.N.hg38 C3N-03233 LUAD WGS blood_normal CPT0180830002 636b36de-3e38-4ecb-8d7e-48ca57d0e105_wgs_gdc_realn.bam 89231500591 BAM harmonized CPTAC3 e41a62b8-cd92-40da-8a77-98df052dfb6b a0fc51b04aea8d92ac8a8c81416adc9e { 'aliquot_tag': 'ALQ_99a4c9aa', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03233.WGS.T C3N-03233 LUAD WGS tumor CPT0180730006 CPT0180730006.WholeGenome.RP-1303.bam 106550781126 BAM aligned CPTAC3 c7695f8e-7a09-4400-8f60-8529f7ce0522 d80c1955f6e25f5760fa08da449d3f47 { 'aliquot_tag': 'ALQ_6f9fbf66', 'gdc_sample_type': 'Primary Tumor' } @@ -35118,16 +37414,16 @@ C3N-03238.miRNA-Seq.A C3N-03238 LUAD miRNA-Seq tissue_normal CPT0193900009 19013 C3N-03238.miRNA-Seq.A.hg38 C3N-03238 LUAD miRNA-Seq tissue_normal CPT0193900009 4df1f42a-3bcf-4190-a07d-9d2f81d53684_mirnaseq_gdc_realn.bam 275423474 BAM harmonized CPTAC3 53dcecd1-f014-435e-a0a3-28ae316c29ff 8d5e553a0f94d7c4b9136063139c0168 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03238.miRNA-Seq.T C3N-03238 LUAD miRNA-Seq tumor CPT0193870009 190130_UNC31-K00269_0188_BH2FGCBBXY_TTAGGC_S4_L008_R1_001.unaln.bam 185720836 BAM unaligned CPTAC3 ed84e3a2-868c-4a54-907c-6f4b6246a6e4 26fd73c4aa636af003ddacad3106d448 { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor' } C3N-03238.miRNA-Seq.T.hg38 C3N-03238 LUAD miRNA-Seq tumor CPT0193870009 819165ed-9ec3-4c05-a16e-b058e05f2c1d_mirnaseq_gdc_realn.bam 204664693 BAM harmonized CPTAC3 2b1ee678-ae93-46e9-a63b-92da3e11efcd eb3e5e13647f85fec741c8d516c6bcc3 { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03238.RNA-Seq.chimeric.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 57c06145-ed1b-4947-9097-cc8df88c9555.rna_seq.chimeric.gdc_realn.bam 50344936 BAM chimeric harmonized CPTAC3 3669a452-eb62-447d-8467-11262822b0b6 6b1fa9b558502bf25631d81a3adaada9 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03238.RNA-Seq.chimeric.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 8767aa04-2bb9-45b2-ac73-5c8e317581ea.rna_seq.chimeric.gdc_realn.bam 376643475 BAM chimeric harmonized CPTAC3 59f66465-a2e2-4580-9f4b-a8125fa08b1e 78be80315e83599040ef46decf341cdf { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03238.RNA-Seq.genomic.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 57c06145-ed1b-4947-9097-cc8df88c9555.rna_seq.genomic.gdc_realn.bam 9696155471 BAM genomic harmonized CPTAC3 1818b768-1f07-46c4-818a-0ba8b7fb9a16 229660a5b0c2cef2c17bf1f18d417f38 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03238.RNA-Seq.genomic.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 8767aa04-2bb9-45b2-ac73-5c8e317581ea.rna_seq.genomic.gdc_realn.bam 8902746952 BAM genomic harmonized CPTAC3 db6cc115-8be1-49f9-bfa8-b51ad04f6fb6 1e2b90eaff9e1bb25ee00b0b51758006 { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03238.RNA-Seq.R1_L005.A C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTCAA_S18_L005_R1_001.fastq.gz 4405329523 FASTQ R1_L005 unaligned CPTAC3 0e991771-8719-4273-a2de-f665f2a9e1e2 5432568e50df19d1cc7bfcc5cc980818 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03238.RNA-Seq.R1_L007.T C3N-03238 LUAD RNA-Seq tumor CPT0193870009 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L007_R1_001.fastq.gz 3677865161 FASTQ R1_L007 unaligned CPTAC3 64b860fe-c284-4da3-b37e-4843827fab04 1a6436cac17ad26910a392355a4e668e { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03238.RNA-Seq.R2_L005.A C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTCAA_S18_L005_R2_001.fastq.gz 4711576990 FASTQ R2_L005 unaligned CPTAC3 44bb94a1-eebb-46a7-bb46-897f5c4f0c51 b11c36c07257123503a38c8c86e60b65 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03238.RNA-Seq.R2_L007.T C3N-03238 LUAD RNA-Seq tumor CPT0193870009 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L007_R2_001.fastq.gz 3999895913 FASTQ R2_L007 unaligned CPTAC3 4ba73c09-93fa-4b37-93f3-0035192a4bf0 bb2d9ad4a6c39a64bfc26555a21cf034 { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03238.RNA-Seq.transcriptome.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 57c06145-ed1b-4947-9097-cc8df88c9555.rna_seq.transcriptome.gdc_realn.bam 10111491568 BAM transcriptome harmonized CPTAC3 65e6191a-71e8-45a2-9287-ada795bb6013 8d9f83ba016d1711c0121326bbdd33a5 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03238.RNA-Seq.transcriptome.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 8767aa04-2bb9-45b2-ac73-5c8e317581ea.rna_seq.transcriptome.gdc_realn.bam 8156198686 BAM transcriptome harmonized CPTAC3 1f47109d-a9f3-43d8-a603-f72376b0c8cd b9702c76c2fe94f5d4f1d47449cbaef8 { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor' } +C3N-03238.RNA-Seq.chimeric.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 fab544ef-eb84-4c36-a5c6-3cec096d2d06.rna_seq.chimeric.gdc_realn.bam 50328154 BAM chimeric harmonized CPTAC3 647279e1-2412-4215-8d6f-62b675abba5f ebe3648b61fdacda4b0eb8a1aad507f4 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03238.RNA-Seq.chimeric.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 e726fba0-bdd5-44e3-88fd-94e0ff261e9d.rna_seq.chimeric.gdc_realn.bam 376616615 BAM chimeric harmonized CPTAC3 dc49edb4-af31-417d-bc9a-b07a215a4691 434573771895a016e5748fd32b3b79fe { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor' } +C3N-03238.RNA-Seq.genomic.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 fab544ef-eb84-4c36-a5c6-3cec096d2d06.rna_seq.genomic.gdc_realn.bam 9697550628 BAM genomic harmonized CPTAC3 be495263-a550-422f-ae3a-3ceb66805261 1fb743faf076ad29e73501a49e86ef16 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03238.RNA-Seq.genomic.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 e726fba0-bdd5-44e3-88fd-94e0ff261e9d.rna_seq.genomic.gdc_realn.bam 8903315406 BAM genomic harmonized CPTAC3 94246398-3920-432e-8a67-03abdc2cb038 b3aca8a63fe3a93e2635810aaba0fc2d { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor' } +C3N-03238.RNA-Seq.R1_L005.A C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTCAA_S18_L005_R1_001.fastq.gz 4405329523 FASTQ R1_L005 unaligned CPTAC3 0e991771-8719-4273-a2de-f665f2a9e1e2 5432568e50df19d1cc7bfcc5cc980818 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03238.RNA-Seq.R1_L007.T C3N-03238 LUAD RNA-Seq tumor CPT0193870009 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L007_R1_001.fastq.gz 3677865161 FASTQ R1_L007 unaligned CPTAC3 64b860fe-c284-4da3-b37e-4843827fab04 1a6436cac17ad26910a392355a4e668e { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03238.RNA-Seq.R2_L005.A C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 190201_UNC31-K00269_0190_BH3LFKBBXY_AGTCAA_S18_L005_R2_001.fastq.gz 4711576990 FASTQ R2_L005 unaligned CPTAC3 44bb94a1-eebb-46a7-bb46-897f5c4f0c51 b11c36c07257123503a38c8c86e60b65 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03238.RNA-Seq.R2_L007.T C3N-03238 LUAD RNA-Seq tumor CPT0193870009 190131_UNC32-K00270_0142_BH3LFYBBXY_TTAGGC_S20_L007_R2_001.fastq.gz 3999895913 FASTQ R2_L007 unaligned CPTAC3 4ba73c09-93fa-4b37-93f3-0035192a4bf0 bb2d9ad4a6c39a64bfc26555a21cf034 { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03238.RNA-Seq.transcriptome.A.hg38 C3N-03238 LUAD RNA-Seq tissue_normal CPT0193900009 fab544ef-eb84-4c36-a5c6-3cec096d2d06.rna_seq.transcriptome.gdc_realn.bam 11458092213 BAM transcriptome harmonized CPTAC3 20d8bb06-9551-4580-a835-3a9ca4366b9f e61de93d589ee267e012deee6f298795 { 'aliquot_tag': 'ALQ_7fc8a354', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03238.RNA-Seq.transcriptome.T.hg38 C3N-03238 LUAD RNA-Seq tumor CPT0193870009 e726fba0-bdd5-44e3-88fd-94e0ff261e9d.rna_seq.transcriptome.gdc_realn.bam 9129897901 BAM transcriptome harmonized CPTAC3 7ea0305f-20e8-4302-acd6-f6c6ac219456 436fd74c41bd50e35001d193c2bbd936 { 'aliquot_tag': 'ALQ_6b4ace1', 'gdc_sample_type': 'Primary Tumor' } C3N-03238.WGS.N C3N-03238 LUAD WGS blood_normal CPT0193990002 CPT0193990002.WholeGenome.RP-1303.bam 56392344919 BAM aligned CPTAC3 7278781c-533f-4144-8494-7f0f1a814aab b7ce8c10bd733207d94626be69085c56 { 'aliquot_tag': 'ALQ_e50a18ad', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03238.WGS.N.hg38 C3N-03238 LUAD WGS blood_normal CPT0193990002 72e2855c-e53f-494e-a1c7-98cfb3ae3d80_wgs_gdc_realn.bam 81996900039 BAM harmonized CPTAC3 f6d93cb6-f4f3-4485-a5e3-ee8007c76f74 f6275f14df3728cd5346baecfe7a7af1 { 'aliquot_tag': 'ALQ_e50a18ad', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03238.WGS.T C3N-03238 LUAD WGS tumor CPT0193870006 CPT0193870006.WholeGenome.RP-1303.bam 62284551098 BAM aligned CPTAC3 a975941c-0d94-45d9-9868-1df58fefc8b6 6ada8d46928b17325b70ffc03ee36d4c { 'aliquot_tag': 'ALQ_960bb170', 'gdc_sample_type': 'Primary Tumor' } @@ -35142,13 +37438,16 @@ C3N-03415.MethArray.Green.T C3N-03415 UCEC Methylation Array tumor CPT0247910006 C3N-03415.MethArray.Red.T C3N-03415 UCEC Methylation Array tumor CPT0247910006 203561620091_R06C01_Red.idat 13676211 IDAT Red NA CPTAC3 0d4d1d08-1478-4d72-8ef9-7b85805c8521 6f07a1cadff8616bc089922f67cc1544 { 'aliquot_tag': 'ALQ_84d09a72', 'gdc_sample_type': 'Primary Tumor' } C3N-03415.miRNA-Seq.T C3N-03415 UCEC miRNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0215_BH7FYKBBXY_GCCAAT_S6_L001_R1_001.unaln.bam 200579286 BAM unaligned CPTAC3 5f4b4196-dd3c-4529-8489-3eec2b246fba b66b7c7986a86e08f39778cef7594285 { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor' } C3N-03415.miRNA-Seq.T.hg38 C3N-03415 UCEC miRNA-Seq tumor CPT0247910009 fa94fe98-ee4e-4dac-b452-efb70d7351ff_mirnaseq_gdc_realn.bam 233648168 BAM harmonized CPTAC3 84bbb569-5365-453b-a52b-e7a9560f1e93 4c905997fb52fb1c1855262dab0a470b { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03415.RNA-Seq.chimeric.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 f150c2d2-6ef2-4f5e-b5cf-b87422563dd2.rna_seq.chimeric.gdc_realn.bam 26987458 BAM chimeric harmonized CPTAC3 a1c2b44b-016d-4d13-9587-69d82a70620f 65e67ee62b0e31426aebc17444e8a2dc { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03415.RNA-Seq.genomic.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 f150c2d2-6ef2-4f5e-b5cf-b87422563dd2.rna_seq.genomic.gdc_realn.bam 7159952532 BAM genomic harmonized CPTAC3 eb392a80-8f3d-474a-b346-e2d67d1f0486 8e4e1a3105c81a6b6705fecab353cd43 { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03415.RNA-Seq.R1_L005.T C3N-03415 UCEC RNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0214_AH7FTJBBXY_GCTTGTCA-GAACATAC_S19_L005_R1_001.fastq.gz 3511526323 FASTQ R1_L005 unaligned CPTAC3 8c5d0868-cd21-475d-bbf7-92889d251ee3 8e4b13eb99f07896c07ea4274076658c { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03415.RNA-Seq.R1_.T C3N-03415 UCEC RNA-Seq tumor CPT0353680001 20210723_P2_D10_WB7988-plate2_S46_R1_001.fastq.gz 3848372346 FASTQ R1_ unaligned CPTAC3 92308208-4da3-4147-8caa-e1678ca5301d 585607aa63e2ad0ceb5e0becb2d643a9 { 'aliquot_tag': 'ALQ_c96cefbb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03415.RNA-Seq.R2_L005.T C3N-03415 UCEC RNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0214_AH7FTJBBXY_GCTTGTCA-GAACATAC_S19_L005_R2_001.fastq.gz 3789275913 FASTQ R2_L005 unaligned CPTAC3 8e57165b-a410-4ef9-9157-b63dff799061 2f83f61f19504deef482bb0152139fd8 { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03415.RNA-Seq.R2_.T C3N-03415 UCEC RNA-Seq tumor CPT0353680001 20210723_P2_D10_WB7988-plate2_S46_R2_001.fastq.gz 3841117633 FASTQ R2_ unaligned CPTAC3 a6e3cb93-7cd5-46d4-b6b7-d02cc86fc8e8 e991749bff7651b69bd53bc5d4bf5a23 { 'aliquot_tag': 'ALQ_c96cefbb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03415.RNA-Seq.transcriptome.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 f150c2d2-6ef2-4f5e-b5cf-b87422563dd2.rna_seq.transcriptome.gdc_realn.bam 9254135840 BAM transcriptome harmonized CPTAC3 19c84db3-82c9-44d5-81a4-e167592930ab a41b3bc42e45190355c9782d1912544d { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03415.RNA-Seq.chimeric.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 2a3af529-1cb9-4b16-a9c6-9ceb1dda1b3e.rna_seq.chimeric.gdc_realn.bam 26971950 BAM chimeric harmonized CPTAC3 647fea5e-5196-41ae-bf48-669d7a4dd9e1 c8703a5eaeec9069eb2ba387b23e055e { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03415.RNA-Seq.chimeric.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0353680001 490fa68e-5462-415a-b7bc-4c5de8745abe.rna_seq.chimeric.gdc_realn.bam 95731469 BAM chimeric harmonized CPTAC3 0669ab65-816b-4ef9-816a-9296b916ecf8 e526f9b49fc9e86321509cad09659a2f { 'aliquot_tag': 'ALQ_c96cefbb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03415.RNA-Seq.genomic.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 2a3af529-1cb9-4b16-a9c6-9ceb1dda1b3e.rna_seq.genomic.gdc_realn.bam 7160960203 BAM genomic harmonized CPTAC3 367fbe82-ff1a-41d3-a266-4b77424bf906 8277fdefb4cb3ecb1d3431481adacc72 { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03415.RNA-Seq.genomic.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0353680001 490fa68e-5462-415a-b7bc-4c5de8745abe.rna_seq.genomic.gdc_realn.bam 5768285296 BAM genomic harmonized CPTAC3 17935cef-0311-4470-bcf7-a9bd066c6b51 1a3259306855eb90aee3e0d3f749c7e8 { 'aliquot_tag': 'ALQ_c96cefbb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03415.RNA-Seq.R1_L005.T C3N-03415 UCEC RNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0214_AH7FTJBBXY_GCTTGTCA-GAACATAC_S19_L005_R1_001.fastq.gz 3511526323 FASTQ R1_L005 unaligned CPTAC3 8c5d0868-cd21-475d-bbf7-92889d251ee3 8e4b13eb99f07896c07ea4274076658c { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03415.RNA-Seq.R2_L005.T C3N-03415 UCEC RNA-Seq tumor CPT0247910009 190508_UNC31-K00269_0214_AH7FTJBBXY_GCTTGTCA-GAACATAC_S19_L005_R2_001.fastq.gz 3789275913 FASTQ R2_L005 unaligned CPTAC3 8e57165b-a410-4ef9-9157-b63dff799061 2f83f61f19504deef482bb0152139fd8 { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-03415.RNA-Seq.T C3N-03415 UCEC RNA-Seq tumor CPT0353680001 20210723_P2_D10_WB7988-plate2_S46_R1_001.fastq.gz 3848372346 FASTQ unaligned CPTAC3 92308208-4da3-4147-8caa-e1678ca5301d 585607aa63e2ad0ceb5e0becb2d643a9 +C3N-03415.RNA-Seq.T C3N-03415 UCEC RNA-Seq tumor CPT0353680001 20210723_P2_D10_WB7988-plate2_S46_R2_001.fastq.gz 3841117633 FASTQ unaligned CPTAC3 a6e3cb93-7cd5-46d4-b6b7-d02cc86fc8e8 e991749bff7651b69bd53bc5d4bf5a23 +C3N-03415.RNA-Seq.transcriptome.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0247910009 2a3af529-1cb9-4b16-a9c6-9ceb1dda1b3e.rna_seq.transcriptome.gdc_realn.bam 10603160436 BAM transcriptome harmonized CPTAC3 6609db36-0ffe-4172-8bc0-4d1ec9f3209f a9e99b1327e921b2b3f56204204b0c55 { 'aliquot_tag': 'ALQ_146f87e3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03415.RNA-Seq.transcriptome.T.hg38 C3N-03415 UCEC RNA-Seq tumor CPT0353680001 490fa68e-5462-415a-b7bc-4c5de8745abe.rna_seq.transcriptome.gdc_realn.bam 3506468536 BAM transcriptome harmonized CPTAC3 241be3bc-be8a-4277-9e5c-206bb2913cc2 3a59698d98c2b772fcd25e8f17c4a702 { 'aliquot_tag': 'ALQ_c96cefbb', 'gdc_sample_type': 'Primary Tumor' } C3N-03415.WGS.N C3N-03415 UCEC WGS blood_normal CPT0247930002 CPT0247930002.WholeGenome.RP-1303.bam 59890855103 BAM aligned CPTAC3 db13787e-c756-4201-b2b0-915e4d7f82b4 c86632ecd0e3b5c8e83f14e5b97195d7 { 'aliquot_tag': 'ALQ_f97d0d0b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03415.WGS.N.hg38 C3N-03415 UCEC WGS blood_normal CPT0247930002 96e6a040-9758-4be9-998f-70ed0e638962_wgs_gdc_realn.bam 88191041833 BAM harmonized CPTAC3 7b6b6bc6-cb5c-40e7-a8a7-82ed6d17b6e6 72cdbfae0a031ba12211ea42e84889b1 { 'aliquot_tag': 'ALQ_f97d0d0b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03415.WGS.T C3N-03415 UCEC WGS tumor CPT0247910006 CPT0247910006.WholeGenome.RP-1303.bam 71300698411 BAM aligned CPTAC3 adf31d9d-aee4-4767-95aa-5ab0a3135d46 f5d823ab955da058e79b84fd2f454ec1 { 'aliquot_tag': 'ALQ_84d09a72', 'gdc_sample_type': 'Primary Tumor' } @@ -35161,13 +37460,16 @@ C3N-03417.MethArray.Green.T C3N-03417 UCEC Methylation Array tumor CPT0247880006 C3N-03417.MethArray.Red.T C3N-03417 UCEC Methylation Array tumor CPT0247880006 203561450103_R05C01_Red.idat 13676216 IDAT Red NA CPTAC3 faaf9897-f510-4cbe-b7ae-c9483e45418f 128af30d7d5d53b68cbd37867a2800e5 { 'aliquot_tag': 'ALQ_429c2ba6', 'gdc_sample_type': 'Primary Tumor' } C3N-03417.miRNA-Seq.T C3N-03417 UCEC miRNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0215_BH7FYKBBXY_ACAGTG_S5_L001_R1_001.unaln.bam 185106814 BAM unaligned CPTAC3 fc5d0359-5833-4936-9818-4a3ab1fc035e 270de8d8ae98901ccc6ad3bfa1df6e09 { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor' } C3N-03417.miRNA-Seq.T.hg38 C3N-03417 UCEC miRNA-Seq tumor CPT0247880009 69932396-89bf-42df-b27e-35d0093d4108_mirnaseq_gdc_realn.bam 210131557 BAM harmonized CPTAC3 0e8fd441-a489-46c7-9159-6219c8f0dee6 b50b687ad0ff65e57cbaeff0a1c1a2bf { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor' } -C3N-03417.RNA-Seq.chimeric.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 1fda7ebe-069d-4e35-b76c-e7b487797836.rna_seq.chimeric.gdc_realn.bam 31071544 BAM chimeric harmonized CPTAC3 7fbfd0ef-dfd4-4ba5-9913-8b6c9974c0aa c636d4e5da7261044f3b744b2a741974 { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor' } -C3N-03417.RNA-Seq.genomic.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 1fda7ebe-069d-4e35-b76c-e7b487797836.rna_seq.genomic.gdc_realn.bam 8122551017 BAM genomic harmonized CPTAC3 fbfccd01-0364-4b04-b32f-38948a3c01e5 16d1e0f000789c19daeea6991227d7b2 { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor' } -C3N-03417.RNA-Seq.R1_L005.T C3N-03417 UCEC RNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0214_AH7FTJBBXY_ATCCACTG-AGGTGCGT_S16_L005_R1_001.fastq.gz 4070988146 FASTQ R1_L005 unaligned CPTAC3 2a4cc097-989c-4932-834d-3f9ce6bf34a4 38950fc3c8698827168d2734a2e2a601 { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor' } -C3N-03417.RNA-Seq.R1_.T C3N-03417 UCEC RNA-Seq tumor CPT0353690001 20210806_P4_4_WB7988-plate4_S29_R1_001.fastq.gz 3999600997 FASTQ R1_ unaligned CPTAC3 533a2514-6c8d-4800-9c34-7956f713b403 66a4ff7f901ca444b0b29d8d6db1875f { 'aliquot_tag': 'ALQ_f40cc60b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03417.RNA-Seq.R2_L005.T C3N-03417 UCEC RNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0214_AH7FTJBBXY_ATCCACTG-AGGTGCGT_S16_L005_R2_001.fastq.gz 4464777277 FASTQ R2_L005 unaligned CPTAC3 e2da6754-1fa0-4355-a146-66fc98f6e99c 1a6bf8914cfdce4c9dabe499d8c59986 { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor' } -C3N-03417.RNA-Seq.R2_.T C3N-03417 UCEC RNA-Seq tumor CPT0353690001 20210806_P4_4_WB7988-plate4_S29_R2_001.fastq.gz 3834711249 FASTQ R2_ unaligned CPTAC3 5584f042-9cdb-4a5f-840c-7485ffb152de 5af6c21774e04a0b7c7a5b005a178564 { 'aliquot_tag': 'ALQ_f40cc60b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03417.RNA-Seq.transcriptome.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 1fda7ebe-069d-4e35-b76c-e7b487797836.rna_seq.transcriptome.gdc_realn.bam 11896245747 BAM transcriptome harmonized CPTAC3 829d415b-4cbf-444f-a8dc-8779da21fdf2 3795648707df84bd48cf939fd83d991a { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor' } +C3N-03417.RNA-Seq.chimeric.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 6a7e2d00-d9dd-4447-9ade-07835ad7ff7c.rna_seq.chimeric.gdc_realn.bam 31066764 BAM chimeric harmonized CPTAC3 74191c15-3b0a-406a-8be6-4ea4f147ba73 67bef9d21182fa269d5ad99187b60a73 { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor' } +C3N-03417.RNA-Seq.chimeric.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0353690001 e737e5a2-768e-425d-9c9b-1abb833d576a.rna_seq.chimeric.gdc_realn.bam 35955255 BAM chimeric harmonized CPTAC3 b91666c8-e0dd-4e07-8287-f68da2ea8beb 758e6c27cc9dae34df9eeda62cc5a1ac { 'aliquot_tag': 'ALQ_f40cc60b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03417.RNA-Seq.genomic.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 6a7e2d00-d9dd-4447-9ade-07835ad7ff7c.rna_seq.genomic.gdc_realn.bam 8123581923 BAM genomic harmonized CPTAC3 c6bb5cff-c7c0-42d6-a5e6-dacc95aec80e 37cb4ede9c4ac1e15271263616b6ec40 { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor' } +C3N-03417.RNA-Seq.genomic.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0353690001 e737e5a2-768e-425d-9c9b-1abb833d576a.rna_seq.genomic.gdc_realn.bam 11578742427 BAM genomic harmonized CPTAC3 1c61ca8b-708d-4f65-9a45-81ca80dd397e 207a9670cfc096fe59eba99ebf8960da { 'aliquot_tag': 'ALQ_f40cc60b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03417.RNA-Seq.R1_L005.T C3N-03417 UCEC RNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0214_AH7FTJBBXY_ATCCACTG-AGGTGCGT_S16_L005_R1_001.fastq.gz 4070988146 FASTQ R1_L005 unaligned CPTAC3 2a4cc097-989c-4932-834d-3f9ce6bf34a4 38950fc3c8698827168d2734a2e2a601 { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03417.RNA-Seq.R2_L005.T C3N-03417 UCEC RNA-Seq tumor CPT0247880009 190508_UNC31-K00269_0214_AH7FTJBBXY_ATCCACTG-AGGTGCGT_S16_L005_R2_001.fastq.gz 4464777277 FASTQ R2_L005 unaligned CPTAC3 e2da6754-1fa0-4355-a146-66fc98f6e99c 1a6bf8914cfdce4c9dabe499d8c59986 { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-03417.RNA-Seq.T C3N-03417 UCEC RNA-Seq tumor CPT0353690001 20210806_P4_4_WB7988-plate4_S29_R1_001.fastq.gz 3999600997 FASTQ unaligned CPTAC3 533a2514-6c8d-4800-9c34-7956f713b403 66a4ff7f901ca444b0b29d8d6db1875f +C3N-03417.RNA-Seq.T C3N-03417 UCEC RNA-Seq tumor CPT0353690001 20210806_P4_4_WB7988-plate4_S29_R2_001.fastq.gz 3834711249 FASTQ unaligned CPTAC3 5584f042-9cdb-4a5f-840c-7485ffb152de 5af6c21774e04a0b7c7a5b005a178564 +C3N-03417.RNA-Seq.transcriptome.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0247880009 6a7e2d00-d9dd-4447-9ade-07835ad7ff7c.rna_seq.transcriptome.gdc_realn.bam 13820352739 BAM transcriptome harmonized CPTAC3 313e3f81-97b6-4642-bbb5-9a5c241204cc dcb2115ed0f3bc01758c7561b029b15f { 'aliquot_tag': 'ALQ_d2233637', 'gdc_sample_type': 'Primary Tumor' } +C3N-03417.RNA-Seq.transcriptome.T.hg38 C3N-03417 UCEC RNA-Seq tumor CPT0353690001 e737e5a2-768e-425d-9c9b-1abb833d576a.rna_seq.transcriptome.gdc_realn.bam 4373245971 BAM transcriptome harmonized CPTAC3 24fc8872-a93b-4ea8-833c-753facb8ba07 f47553b7a4ca0c6d0cc2dfc5488af714 { 'aliquot_tag': 'ALQ_f40cc60b', 'gdc_sample_type': 'Primary Tumor' } C3N-03417.WGS.N C3N-03417 UCEC WGS blood_normal CPT0247900002 CPT0247900002.WholeGenome.RP-1303.bam 66344728708 BAM aligned CPTAC3 cd8241ea-ab6d-46fb-a980-1d025846bbfb 91f42349b7d48ae827bc01a34559b8cb { 'aliquot_tag': 'ALQ_bedd77db', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03417.WGS.N.hg38 C3N-03417 UCEC WGS blood_normal CPT0247900002 af45b7d1-1622-428a-8d4b-807203076c65_wgs_gdc_realn.bam 97103645547 BAM harmonized CPTAC3 e222d9bb-8c36-4cf8-b3e0-a30723177dd6 616d54a77b992773f092ad5758fde43e { 'aliquot_tag': 'ALQ_bedd77db', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03417.WGS.T C3N-03417 UCEC WGS tumor CPT0247880006 CPT0247880006.WholeGenome.RP-1303.bam 77961109286 BAM aligned CPTAC3 41ecf88f-b275-4e39-a6ba-52a7a8cc0c04 e881120557bb928854318997d9ef32e6 { 'aliquot_tag': 'ALQ_429c2ba6', 'gdc_sample_type': 'Primary Tumor' } @@ -35184,16 +37486,16 @@ C3N-03420.miRNA-Seq.A C3N-03420 LUAD miRNA-Seq tissue_normal CPT0187440009 19013 C3N-03420.miRNA-Seq.A.hg38 C3N-03420 LUAD miRNA-Seq tissue_normal CPT0187440009 aeb86433-b421-4a57-b600-6fdcdad2b658_mirnaseq_gdc_realn.bam 273609668 BAM harmonized CPTAC3 f7bc31a9-3dce-4715-9229-9ec24398ba4c 35f071058efd77204e284bece1269787 { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03420.miRNA-Seq.T C3N-03420 LUAD miRNA-Seq tumor CPT0187430009 190206_UNC31-K00269_0191_AH2WY5BBXY_GAGTGG_S48_L002_R1_001.unaln.bam 187990145 BAM unaligned CPTAC3 8cf62662-68ee-4dd5-a4ae-62c86d9c09ce 0cf5f0e04ea738ba2715b859b309d3f6 { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor' } C3N-03420.miRNA-Seq.T.hg38 C3N-03420 LUAD miRNA-Seq tumor CPT0187430009 8113f521-a29c-40af-bc97-d04ee41ab116_mirnaseq_gdc_realn.bam 210031123 BAM harmonized CPTAC3 2a412e46-2269-4360-8f29-487a4bd002fc 07d40f5e5251307b7ef65f52d53c3635 { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03420.RNA-Seq.chimeric.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2a785253-de9b-4535-85c8-c116ea9d90e6.rna_seq.chimeric.gdc_realn.bam 58093539 BAM chimeric harmonized CPTAC3 8354bbc7-b5e1-43a2-b9c6-b259deb4ebdd 4a9ea0bff54f64da1669d90b76b966a5 { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03420.RNA-Seq.chimeric.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 0981cf2a-e242-463f-bdd7-323c5991d78e.rna_seq.chimeric.gdc_realn.bam 91333519 BAM chimeric harmonized CPTAC3 a021419c-8fcd-4ddf-b73f-554b39d68134 8011770a6d3b738b07d9dfc5dc3fb0e0 { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03420.RNA-Seq.genomic.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2a785253-de9b-4535-85c8-c116ea9d90e6.rna_seq.genomic.gdc_realn.bam 9960031699 BAM genomic harmonized CPTAC3 8c6287de-ce01-4b35-897c-7e3d51fc971b 3aa83313b1ea6d8940ac8a42f78c9576 { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03420.RNA-Seq.genomic.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 0981cf2a-e242-463f-bdd7-323c5991d78e.rna_seq.genomic.gdc_realn.bam 9238259941 BAM genomic harmonized CPTAC3 a9fa993b-4f0b-4d9f-ac5f-b2715d06ecc2 24f7870a8f4c159129acfd9af22f9a15 { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03420.RNA-Seq.R1_L004.A C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 190201_UNC31-K00269_0190_BH3LFKBBXY_TAGCTT_S15_L004_R1_001.fastq.gz 4501646774 FASTQ R1_L004 unaligned CPTAC3 9d56ac18-6cf8-4a90-8d41-7854c93a5ff0 21d378e9fc0e38e8c45350076e4d0d6f { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03420.RNA-Seq.R1_L007.T C3N-03420 LUAD RNA-Seq tumor CPT0187430009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L007_R1_001.fastq.gz 4197313421 FASTQ R1_L007 unaligned CPTAC3 d344e5c3-d58a-435c-9b94-6e73ab8c27e7 0cce3f6765c7cc93e36e50be88a2d95a { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03420.RNA-Seq.R2_L004.A C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 190201_UNC31-K00269_0190_BH3LFKBBXY_TAGCTT_S15_L004_R2_001.fastq.gz 4934314819 FASTQ R2_L004 unaligned CPTAC3 7b211823-2dd4-427b-b0c0-64a491ea091f ac7cd1ab15e66584f58917dbd13d59d4 { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03420.RNA-Seq.R2_L007.T C3N-03420 LUAD RNA-Seq tumor CPT0187430009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L007_R2_001.fastq.gz 4532118716 FASTQ R2_L007 unaligned CPTAC3 5b85fc15-b362-4f45-a1c6-7d5d47d2ed3f 139ba85d1bee264e293f21a3b0ab6a26 { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03420.RNA-Seq.transcriptome.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2a785253-de9b-4535-85c8-c116ea9d90e6.rna_seq.transcriptome.gdc_realn.bam 9408265649 BAM transcriptome harmonized CPTAC3 9891cfa4-509d-4d76-8986-fec3dba16d8e a13cbd0a49ff22b88e8f580a51e08773 { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03420.RNA-Seq.transcriptome.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 0981cf2a-e242-463f-bdd7-323c5991d78e.rna_seq.transcriptome.gdc_realn.bam 7243232167 BAM transcriptome harmonized CPTAC3 939be4fd-184f-411f-b6ad-83e6e20c6f1e 959aaaad7c4f61a51666a0bcbc11d29b { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03420.RNA-Seq.chimeric.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2bb7066c-2629-432a-a972-91da79264296.rna_seq.chimeric.gdc_realn.bam 58073273 BAM chimeric harmonized CPTAC3 7b75797f-eaab-4775-bc39-a37149fbbe48 3f69f36412cac3635f30a609b0d6370f { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03420.RNA-Seq.chimeric.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 6f4d373d-8613-4f2d-b8f6-2d5facdee01f.rna_seq.chimeric.gdc_realn.bam 91327574 BAM chimeric harmonized CPTAC3 af760099-e500-4723-a48c-1f2c377b93ca f28182f5151ccdb7b818a54d72b6f1d9 { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03420.RNA-Seq.genomic.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2bb7066c-2629-432a-a972-91da79264296.rna_seq.genomic.gdc_realn.bam 9961804172 BAM genomic harmonized CPTAC3 7e10a9bc-3755-4b87-bf98-7e268da6bb53 e62679d5f8b8e07b2bc0073dffc2afa5 { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03420.RNA-Seq.genomic.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 6f4d373d-8613-4f2d-b8f6-2d5facdee01f.rna_seq.genomic.gdc_realn.bam 9239368558 BAM genomic harmonized CPTAC3 ed97d2f8-f92e-4500-b192-a444e5596fd5 0538e21c6cb7707acb6559028274fea3 { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03420.RNA-Seq.R1_L004.A C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 190201_UNC31-K00269_0190_BH3LFKBBXY_TAGCTT_S15_L004_R1_001.fastq.gz 4501646774 FASTQ R1_L004 unaligned CPTAC3 9d56ac18-6cf8-4a90-8d41-7854c93a5ff0 21d378e9fc0e38e8c45350076e4d0d6f { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03420.RNA-Seq.R1_L007.T C3N-03420 LUAD RNA-Seq tumor CPT0187430009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L007_R1_001.fastq.gz 4197313421 FASTQ R1_L007 unaligned CPTAC3 d344e5c3-d58a-435c-9b94-6e73ab8c27e7 0cce3f6765c7cc93e36e50be88a2d95a { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03420.RNA-Seq.R2_L004.A C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 190201_UNC31-K00269_0190_BH3LFKBBXY_TAGCTT_S15_L004_R2_001.fastq.gz 4934314819 FASTQ R2_L004 unaligned CPTAC3 7b211823-2dd4-427b-b0c0-64a491ea091f ac7cd1ab15e66584f58917dbd13d59d4 { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-03420.RNA-Seq.R2_L007.T C3N-03420 LUAD RNA-Seq tumor CPT0187430009 190205_UNC32-K00270_0144_BH3M3NBBXY_ACTGAT_S7_L007_R2_001.fastq.gz 4532118716 FASTQ R2_L007 unaligned CPTAC3 5b85fc15-b362-4f45-a1c6-7d5d47d2ed3f 139ba85d1bee264e293f21a3b0ab6a26 { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03420.RNA-Seq.transcriptome.A.hg38 C3N-03420 LUAD RNA-Seq tissue_normal CPT0187440009 2bb7066c-2629-432a-a972-91da79264296.rna_seq.transcriptome.gdc_realn.bam 10629187415 BAM transcriptome harmonized CPTAC3 da6e37a1-dfdd-4b18-aa6c-67d8709b9a0f ac16abf8856324175d5d5bbe8b558b50 { 'aliquot_tag': 'ALQ_e3332c7', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03420.RNA-Seq.transcriptome.T.hg38 C3N-03420 LUAD RNA-Seq tumor CPT0187430009 6f4d373d-8613-4f2d-b8f6-2d5facdee01f.rna_seq.transcriptome.gdc_realn.bam 8191505195 BAM transcriptome harmonized CPTAC3 1185680d-c0ed-4a3d-acb9-2c33b2bcf9dd 88da551fcb000173fd832587a4c94426 { 'aliquot_tag': 'ALQ_bc13eed7', 'gdc_sample_type': 'Primary Tumor' } C3N-03420.WGS.N C3N-03420 LUAD WGS blood_normal CPT0187480002 CPT0187480002.WholeGenome.RP-1303.bam 58848048353 BAM aligned CPTAC3 1843c367-11ff-41bc-be14-f70a13aa1224 e512f1d01104037d01fd6309a1c170c9 { 'aliquot_tag': 'ALQ_5c11064e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03420.WGS.N.hg38 C3N-03420 LUAD WGS blood_normal CPT0187480002 12e9b5ca-92a6-44bb-8690-98dbfde28bda_wgs_gdc_realn.bam 84727109368 BAM harmonized CPTAC3 1da5a6bd-2abc-4497-b00b-56113b9bbbce a41eef8707b4fac80c18f3db1e52efd5 { 'aliquot_tag': 'ALQ_5c11064e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03420.WGS.T C3N-03420 LUAD WGS tumor CPT0187430006 CPT0187430006.WholeGenome.RP-1303.bam 69333999031 BAM aligned CPTAC3 1ed2b6e5-7c98-4796-8a46-9dc360bfe811 cee20f0d19ccded829e13d079666dfe5 { 'aliquot_tag': 'ALQ_2cacf346', 'gdc_sample_type': 'Primary Tumor' } @@ -35214,12 +37516,12 @@ C3N-03424.miRNA-Seq.T C3N-03424 LSCC miRNA-Seq tumor CPT0245780009 190228_UNC32- C3N-03424.miRNA-Seq.T.hg38 C3N-03424 LSCC miRNA-Seq tumor CPT0245780009 cd301c86-5942-426c-9a18-d82324c3b785_mirnaseq_gdc_realn.bam 192348732 BAM harmonized CPTAC3 732d8e9b-6878-48ac-83ff-c030b1034aa4 11b5c72e2fed6d5af34a92306a9e3c3a { 'aliquot_tag': 'ALQ_b4ea95cb', 'gdc_sample_type': 'Primary Tumor' } C3N-03424.RNA-Seq.chimeric.A.hg38 C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 b06b8fa6-1dbd-4ba6-b61e-93f31386a625.rna_seq.chimeric.gdc_realn.bam 62521078 BAM chimeric harmonized CPTAC3 53190851-b5c4-4137-918a-26cd18d89749 dc38548e79a55dccfa2ec81375d95293 { 'aliquot_tag': 'ALQ_898abc7b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03424.RNA-Seq.chimeric.T.hg38 C3N-03424 LSCC RNA-Seq tumor CPT0245780009 1781905a-d90e-4d45-97ed-837d7b177846.rna_seq.chimeric.gdc_realn.bam 67971795 BAM chimeric harmonized CPTAC3 b11f2e9f-5bdb-4eee-bf9a-6b48046c6c55 7d1678cb4a72761e5d32d98093eaf73e { 'aliquot_tag': 'ALQ_b4ea95cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03424.RNA-Seq.genomic.A.hg38 C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 b06b8fa6-1dbd-4ba6-b61e-93f31386a625.rna_seq.genomic.gdc_realn.bam 9226318348 BAM genomic harmonized CPTAC3 75fbe086-0119-40e4-976a-3700502d1a67 03ebad9ac22466ea2a123ef1bbca922e { 'aliquot_tag': 'ALQ_898abc7b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03424.RNA-Seq.genomic.A.hg38 C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 b06b8fa6-1dbd-4ba6-b61e-93f31386a625.rna_seq.genomic.gdc_realn.bam 9226318348 BAM genomic harmonized CPTAC3 e19fe19d-d336-4997-b004-7e2e4803904f 03ebad9ac22466ea2a123ef1bbca922e { 'aliquot_tag': 'ALQ_898abc7b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03424.RNA-Seq.genomic.T.hg38 C3N-03424 LSCC RNA-Seq tumor CPT0245780009 1781905a-d90e-4d45-97ed-837d7b177846.rna_seq.genomic.gdc_realn.bam 7997204055 BAM genomic harmonized CPTAC3 686f3b72-0d31-4787-9911-85be92d01ee5 a14218de63b803702b0ec262d10e5a8a { 'aliquot_tag': 'ALQ_b4ea95cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03424.RNA-Seq.R1_L003.A C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L003_R1_001.fastq.gz 4281360338 FASTQ R1_L003 unaligned CPTAC3 08126d76-9242-4201-882a-4d88b862acbf 04f229308b5bb437e49606daa16b62ae { 'aliquot_tag': 'ALQ_898abc7b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03424.RNA-Seq.R1_L004.T C3N-03424 LSCC RNA-Seq tumor CPT0245780009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L004_R1_001.fastq.gz 3703824715 FASTQ R1_L004 unaligned CPTAC3 fb14510e-355d-4f8a-b0ac-a0611c639e60 bed63612dfac9d80891191e80c743816 { 'aliquot_tag': 'ALQ_b4ea95cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03424.RNA-Seq.R2_L003.A C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L003_R2_001.fastq.gz 4643006421 FASTQ R2_L003 unaligned CPTAC3 6aeaf104-1e4e-4d23-a1a9-0121601c8035 4aaeafa70883e1d6e4cdf89353bc22b4 { 'aliquot_tag': 'ALQ_898abc7b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03424.RNA-Seq.R2_L004.T C3N-03424 LSCC RNA-Seq tumor CPT0245780009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L004_R2_001.fastq.gz 3956937706 FASTQ R2_L004 unaligned CPTAC3 932af614-1b0a-4a9a-8008-bba4abc8646f 3a1732316dffe5dba71e5bc001613928 { 'aliquot_tag': 'ALQ_b4ea95cb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03424.RNA-Seq.R1_L003.A C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L003_R1_001.fastq.gz 4281360338 FASTQ R1_L003 unaligned CPTAC3 08126d76-9242-4201-882a-4d88b862acbf 04f229308b5bb437e49606daa16b62ae { 'aliquot_tag': 'ALQ_898abc7b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03424.RNA-Seq.R1_L004.T C3N-03424 LSCC RNA-Seq tumor CPT0245780009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L004_R1_001.fastq.gz 3703824715 FASTQ R1_L004 unaligned CPTAC3 fb14510e-355d-4f8a-b0ac-a0611c639e60 bed63612dfac9d80891191e80c743816 { 'aliquot_tag': 'ALQ_b4ea95cb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03424.RNA-Seq.R2_L003.A C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 190125_UNC31-K00269_0184_AH3M32BBXY_GAGTGG_S6_L003_R2_001.fastq.gz 4643006421 FASTQ R2_L003 unaligned CPTAC3 6aeaf104-1e4e-4d23-a1a9-0121601c8035 4aaeafa70883e1d6e4cdf89353bc22b4 { 'aliquot_tag': 'ALQ_898abc7b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03424.RNA-Seq.R2_L004.T C3N-03424 LSCC RNA-Seq tumor CPT0245780009 190125_UNC31-K00269_0184_AH3M32BBXY_GTTTCG_S4_L004_R2_001.fastq.gz 3956937706 FASTQ R2_L004 unaligned CPTAC3 932af614-1b0a-4a9a-8008-bba4abc8646f 3a1732316dffe5dba71e5bc001613928 { 'aliquot_tag': 'ALQ_b4ea95cb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } C3N-03424.RNA-Seq.transcriptome.A.hg38 C3N-03424 LSCC RNA-Seq tissue_normal CPT0245790009 b06b8fa6-1dbd-4ba6-b61e-93f31386a625.rna_seq.transcriptome.gdc_realn.bam 11245597389 BAM transcriptome harmonized CPTAC3 f37dfcaa-4881-460e-b1fe-7be9506c68bb 1f3c2d3fca3846c291a210abd84d180c { 'aliquot_tag': 'ALQ_898abc7b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03424.RNA-Seq.transcriptome.T.hg38 C3N-03424 LSCC RNA-Seq tumor CPT0245780009 1781905a-d90e-4d45-97ed-837d7b177846.rna_seq.transcriptome.gdc_realn.bam 10302121848 BAM transcriptome harmonized CPTAC3 c4b94028-6642-4471-a3b4-6fb0a12904fe def770205349ae607797506889572e62 { 'aliquot_tag': 'ALQ_b4ea95cb', 'gdc_sample_type': 'Primary Tumor' } C3N-03424.WGS.N C3N-03424 LSCC WGS blood_normal CPT0245820002 CPT0245820002.WholeGenome.RP-1303.bam 62890909963 BAM aligned CPTAC3 d19a73fc-1fa3-43e3-ba49-67a5ef252228 3d96cb74a5e956f1184907a1a40102aa { 'aliquot_tag': 'ALQ_98dee637', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35242,12 +37544,12 @@ C3N-03425.miRNA-Seq.T C3N-03425 LSCC miRNA-Seq tumor CPT0245830009 190228_UNC32- C3N-03425.miRNA-Seq.T.hg38 C3N-03425 LSCC miRNA-Seq tumor CPT0245830009 eebfb1f2-0cef-47d9-88dd-17bd1cecd292_mirnaseq_gdc_realn.bam 238780158 BAM harmonized CPTAC3 2545207f-2614-4bf3-897f-cc5ca9c5645e f2275f932530c2ec07ae458a9b56f19a { 'aliquot_tag': 'ALQ_326c160f', 'gdc_sample_type': 'Primary Tumor' } C3N-03425.RNA-Seq.chimeric.A.hg38 C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 87d29acf-2bc9-4ca9-9954-beddd5f49e3d.rna_seq.chimeric.gdc_realn.bam 56348693 BAM chimeric harmonized CPTAC3 cbdd1546-29c3-4ec4-b196-9f74607da8c3 2a63c71d5c1ba571c0387eb829f7216d { 'aliquot_tag': 'ALQ_804cca1f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03425.RNA-Seq.chimeric.T.hg38 C3N-03425 LSCC RNA-Seq tumor CPT0245830009 6c46fd25-e6f3-43e4-8676-d2d7de8858a8.rna_seq.chimeric.gdc_realn.bam 36975905 BAM chimeric harmonized CPTAC3 7f4c727e-4979-47d5-9d30-c1fc782cbe9c db6bf86018373c2f63128f019a5a0325 { 'aliquot_tag': 'ALQ_326c160f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03425.RNA-Seq.genomic.A.hg38 C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 87d29acf-2bc9-4ca9-9954-beddd5f49e3d.rna_seq.genomic.gdc_realn.bam 8045797073 BAM genomic harmonized CPTAC3 4236d8d3-c57b-41ba-98c3-a09aa42400df 922ff2fd7b3e80ba8a37c7cf82e0b615 { 'aliquot_tag': 'ALQ_804cca1f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03425.RNA-Seq.genomic.T.hg38 C3N-03425 LSCC RNA-Seq tumor CPT0245830009 6c46fd25-e6f3-43e4-8676-d2d7de8858a8.rna_seq.genomic.gdc_realn.bam 7460685409 BAM genomic harmonized CPTAC3 8f7a7661-0feb-44f2-ba2f-75d422e5d069 42a7fe293aff1bb7bfe974037aef91a7 { 'aliquot_tag': 'ALQ_326c160f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03425.RNA-Seq.R1_L003.A C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L003_R1_001.fastq.gz 3927624892 FASTQ R1_L003 unaligned CPTAC3 6dc9b0b2-01c2-4f73-8beb-cfb794f6b555 2c756073b78c7635bdf492e7605036d8 { 'aliquot_tag': 'ALQ_804cca1f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03425.RNA-Seq.R1_L003.T C3N-03425 LSCC RNA-Seq tumor CPT0245830009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L003_R1_001.fastq.gz 3551251612 FASTQ R1_L003 unaligned CPTAC3 72ed9436-a381-4055-b785-68a9352ab86e c173e91723f83208aa731dd7af10c338 { 'aliquot_tag': 'ALQ_326c160f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03425.RNA-Seq.R2_L003.A C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L003_R2_001.fastq.gz 4257501212 FASTQ R2_L003 unaligned CPTAC3 3ca827ca-cee9-4417-b20c-8e537eade377 c56207ea9071bbabd39d20798fb96eb0 { 'aliquot_tag': 'ALQ_804cca1f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03425.RNA-Seq.R2_L003.T C3N-03425 LSCC RNA-Seq tumor CPT0245830009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L003_R2_001.fastq.gz 3786048537 FASTQ R2_L003 unaligned CPTAC3 b43f757a-58b7-4b23-9f86-d485ba357aa1 bd00c1f01e506b18a881ee6db6941632 { 'aliquot_tag': 'ALQ_326c160f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03425.RNA-Seq.genomic.A.hg38 C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 87d29acf-2bc9-4ca9-9954-beddd5f49e3d.rna_seq.genomic.gdc_realn.bam 8045797073 BAM genomic harmonized CPTAC3 5f15563f-c3b5-4aa0-ba15-e1f2a18e0c26 922ff2fd7b3e80ba8a37c7cf82e0b615 { 'aliquot_tag': 'ALQ_804cca1f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03425.RNA-Seq.genomic.T.hg38 C3N-03425 LSCC RNA-Seq tumor CPT0245830009 6c46fd25-e6f3-43e4-8676-d2d7de8858a8.rna_seq.genomic.gdc_realn.bam 7460685409 BAM genomic harmonized CPTAC3 bf087956-2bb7-4e97-ae61-a097b98e77c2 42a7fe293aff1bb7bfe974037aef91a7 { 'aliquot_tag': 'ALQ_326c160f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03425.RNA-Seq.R1_L003.A C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L003_R1_001.fastq.gz 3927624892 FASTQ R1_L003 unaligned CPTAC3 6dc9b0b2-01c2-4f73-8beb-cfb794f6b555 2c756073b78c7635bdf492e7605036d8 { 'aliquot_tag': 'ALQ_804cca1f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03425.RNA-Seq.R1_L003.T C3N-03425 LSCC RNA-Seq tumor CPT0245830009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L003_R1_001.fastq.gz 3551251612 FASTQ R1_L003 unaligned CPTAC3 72ed9436-a381-4055-b785-68a9352ab86e c173e91723f83208aa731dd7af10c338 { 'aliquot_tag': 'ALQ_326c160f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03425.RNA-Seq.R2_L003.A C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 190125_UNC31-K00269_0184_AH3M32BBXY_ATTCCT_S7_L003_R2_001.fastq.gz 4257501212 FASTQ R2_L003 unaligned CPTAC3 3ca827ca-cee9-4417-b20c-8e537eade377 c56207ea9071bbabd39d20798fb96eb0 { 'aliquot_tag': 'ALQ_804cca1f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03425.RNA-Seq.R2_L003.T C3N-03425 LSCC RNA-Seq tumor CPT0245830009 190125_UNC31-K00269_0184_AH3M32BBXY_ACTGAT_S8_L003_R2_001.fastq.gz 3786048537 FASTQ R2_L003 unaligned CPTAC3 b43f757a-58b7-4b23-9f86-d485ba357aa1 bd00c1f01e506b18a881ee6db6941632 { 'aliquot_tag': 'ALQ_326c160f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-03425.RNA-Seq.transcriptome.A.hg38 C3N-03425 LSCC RNA-Seq tissue_normal CPT0245840009 87d29acf-2bc9-4ca9-9954-beddd5f49e3d.rna_seq.transcriptome.gdc_realn.bam 10038441569 BAM transcriptome harmonized CPTAC3 798f70a2-0278-4a9a-9043-f5f8daea89e3 1ced025c0a50c72f7355fdef17db084b { 'aliquot_tag': 'ALQ_804cca1f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03425.RNA-Seq.transcriptome.T.hg38 C3N-03425 LSCC RNA-Seq tumor CPT0245830009 6c46fd25-e6f3-43e4-8676-d2d7de8858a8.rna_seq.transcriptome.gdc_realn.bam 9059953874 BAM transcriptome harmonized CPTAC3 f059512f-ce9c-4c00-ab16-1febfddeebcf c4966c6434731739a15a4b29cd9bd071 { 'aliquot_tag': 'ALQ_326c160f', 'gdc_sample_type': 'Primary Tumor' } C3N-03425.WGS.N C3N-03425 LSCC WGS blood_normal CPT0245870002 CPT0245870002.WholeGenome.RP-1303.bam 64709659788 BAM aligned CPTAC3 8f9bb9b0-dcf5-493e-8a5b-d965134f2ec8 c7e6b70668e9061aff04c44b6b626166 { 'aliquot_tag': 'ALQ_503e6947', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35265,9 +37567,9 @@ C3N-03426.MethArray.Red.T C3N-03426 PDA Methylation Array tumor CPT0226600007 20 C3N-03426.miRNA-Seq.T C3N-03426 PDA miRNA-Seq tumor CPT0226600010 190813_UNC32-K00270_0196_AH5MCWBBXY_GCCAAT_S35_L004_R1_001.unaln.bam 327467507 BAM unaligned CPTAC3 9af93e9c-37e2-47a8-9fec-0223d659a78c f2e6c1e8a2473f6538985312f1a6355b { 'aliquot_tag': 'ALQ_d8869750', 'gdc_sample_type': 'Primary Tumor' } C3N-03426.miRNA-Seq.T.hg38 C3N-03426 PDA miRNA-Seq tumor CPT0226600010 b38c77d7-c235-44cf-925b-b86e74077cae_mirnaseq_gdc_realn.bam 381428449 BAM harmonized CPTAC3 de921739-5ea5-43a2-8bad-f02b12cd5306 7099362bff7a9c0a98f744adb8abd0a3 { 'aliquot_tag': 'ALQ_d8869750', 'gdc_sample_type': 'Primary Tumor' } C3N-03426.RNA-Seq.chimeric.T.hg38 C3N-03426 PDA RNA-Seq tumor CPT0226600010 f6cf2c91-ef8f-4c0d-a8cf-0c04b7df13ac.rna_seq.chimeric.gdc_realn.bam 94105415 BAM chimeric harmonized CPTAC3 e63d625a-2acd-4027-a8ae-ae1912542a7c dee8d7a1fc2b5f9fa1106dc6a8c09f98 { 'aliquot_tag': 'ALQ_d8869750', 'gdc_sample_type': 'Primary Tumor' } -C3N-03426.RNA-Seq.genomic.T.hg38 C3N-03426 PDA RNA-Seq tumor CPT0226600010 f6cf2c91-ef8f-4c0d-a8cf-0c04b7df13ac.rna_seq.genomic.gdc_realn.bam 7909506972 BAM genomic harmonized CPTAC3 095fd565-eda7-4e7f-bbd1-129d5a76822b 89d988c5573c5639de58b0bb845cdeaf { 'aliquot_tag': 'ALQ_d8869750', 'gdc_sample_type': 'Primary Tumor' } -C3N-03426.RNA-Seq.R1_L001.T C3N-03426 PDA RNA-Seq tumor CPT0226600010 190725_UNC32-K00270_0194_AH7HHFBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R1_001.fastq.gz 2605705670 FASTQ R1_L001 unaligned CPTAC3 10689c80-11c6-4f26-b1bc-4bc6d9028ab8 354d097c8abc62af67c5072e64a3eb3d { 'aliquot_tag': 'ALQ_d8869750', 'gdc_sample_type': 'Primary Tumor' } -C3N-03426.RNA-Seq.R2_L001.T C3N-03426 PDA RNA-Seq tumor CPT0226600010 190725_UNC32-K00270_0194_AH7HHFBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R2_001.fastq.gz 2581212895 FASTQ R2_L001 unaligned CPTAC3 addcd074-4774-4cdf-b543-b7d8cbefb8f7 0f56eebb9a31a101770ff4b6fb87869b { 'aliquot_tag': 'ALQ_d8869750', 'gdc_sample_type': 'Primary Tumor' } +C3N-03426.RNA-Seq.genomic.T.hg38 C3N-03426 PDA RNA-Seq tumor CPT0226600010 f6cf2c91-ef8f-4c0d-a8cf-0c04b7df13ac.rna_seq.genomic.gdc_realn.bam 7909506972 BAM genomic harmonized CPTAC3 1d3fc52f-2cde-414f-97e7-5175d7699fb6 89d988c5573c5639de58b0bb845cdeaf { 'aliquot_tag': 'ALQ_d8869750', 'gdc_sample_type': 'Primary Tumor' } +C3N-03426.RNA-Seq.R1_L001.T C3N-03426 PDA RNA-Seq tumor CPT0226600010 190725_UNC32-K00270_0194_AH7HHFBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R1_001.fastq.gz 2605705670 FASTQ R1_L001 unaligned CPTAC3 10689c80-11c6-4f26-b1bc-4bc6d9028ab8 354d097c8abc62af67c5072e64a3eb3d { 'aliquot_tag': 'ALQ_d8869750', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03426.RNA-Seq.R2_L001.T C3N-03426 PDA RNA-Seq tumor CPT0226600010 190725_UNC32-K00270_0194_AH7HHFBBXY_TGGTGGCA-TCCTGTAA_S2_L001_R2_001.fastq.gz 2581212895 FASTQ R2_L001 unaligned CPTAC3 addcd074-4774-4cdf-b543-b7d8cbefb8f7 0f56eebb9a31a101770ff4b6fb87869b { 'aliquot_tag': 'ALQ_d8869750', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-03426.RNA-Seq.transcriptome.T.hg38 C3N-03426 PDA RNA-Seq tumor CPT0226600010 f6cf2c91-ef8f-4c0d-a8cf-0c04b7df13ac.rna_seq.transcriptome.gdc_realn.bam 5790967635 BAM transcriptome harmonized CPTAC3 08ce4983-1839-4e45-84b7-2711b1a3396f 8bccc9266dfd947801ba7205dddaa830 { 'aliquot_tag': 'ALQ_d8869750', 'gdc_sample_type': 'Primary Tumor' } C3N-03426.WGS.N C3N-03426 PDA WGS blood_normal CPT0226640002 CPT0226640002.WholeGenome.RP-1303.bam 56099262908 BAM aligned CPTAC3 1db21dd5-0c3e-4ff5-945f-7a56bd17e0c6 1a1ca2ee375e12fe3bb066b4b607d357 { 'aliquot_tag': 'ALQ_da1361fd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03426.WGS.N.hg38 C3N-03426 PDA WGS blood_normal CPT0226640002 e1401e98-8f02-415f-a1bf-b72c4bbcac6d_wgs_gdc_realn.bam 83027741213 BAM harmonized CPTAC3 c69c0d6e-891a-4d2b-9969-2983e1159e26 44ec8a0587a51d27d92c01562daedd91 { 'aliquot_tag': 'ALQ_da1361fd', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35282,9 +37584,9 @@ C3N-03428.MethArray.Red.T C3N-03428 PDA Methylation Array tumor CPT0226680008 20 C3N-03428.miRNA-Seq.T C3N-03428 PDA miRNA-Seq tumor CPT0226680011 190712_UNC32-K00270_0192_BH7HL3BBXY_GCCAAT_S29_L005_R1_001.unaln.bam 256151116 BAM unaligned CPTAC3 e4b21eb7-e2b0-4964-b321-efe09cabc0a8 d145adb995125386a82d66c4d5cedfc6 { 'aliquot_tag': 'ALQ_9ff1ec07', 'gdc_sample_type': 'Primary Tumor' } C3N-03428.miRNA-Seq.T.hg38 C3N-03428 PDA miRNA-Seq tumor CPT0226680011 86f5958b-f491-408e-a9f1-6d79fb4cb40d_mirnaseq_gdc_realn.bam 284249769 BAM harmonized CPTAC3 f8207596-f3ec-4fa9-a843-015006f95ef3 bd75045199f13c568776bd9f7242ee8f { 'aliquot_tag': 'ALQ_9ff1ec07', 'gdc_sample_type': 'Primary Tumor' } C3N-03428.RNA-Seq.chimeric.T.hg38 C3N-03428 PDA RNA-Seq tumor CPT0226680011 d6ec9651-473a-4e09-b857-7ee87e9ece95.rna_seq.chimeric.gdc_realn.bam 32739224 BAM chimeric harmonized CPTAC3 194b64be-8c68-4a9e-89cf-df9cd544ad82 5f4fa78f22055baf22bc7ae95eadfb24 { 'aliquot_tag': 'ALQ_9ff1ec07', 'gdc_sample_type': 'Primary Tumor' } -C3N-03428.RNA-Seq.genomic.T.hg38 C3N-03428 PDA RNA-Seq tumor CPT0226680011 d6ec9651-473a-4e09-b857-7ee87e9ece95.rna_seq.genomic.gdc_realn.bam 8069722755 BAM genomic harmonized CPTAC3 40e3090d-a24e-4195-8ac4-3aad8a3f12fe e4d90128f63f25bdfe9e092a092d6ba5 { 'aliquot_tag': 'ALQ_9ff1ec07', 'gdc_sample_type': 'Primary Tumor' } -C3N-03428.RNA-Seq.R1_L008.T C3N-03428 PDA RNA-Seq tumor CPT0226680011 190621_UNC32-K00270_0185_BH7G72BBXY_TGGTGGCA-TCCTGTAA_S31_L008_R1_001.fastq.gz 3720892004 FASTQ R1_L008 unaligned CPTAC3 d4ac5776-aedd-417d-acfd-936a62bd5b7d a16dc63f2f96d241c51d09915decb5a5 { 'aliquot_tag': 'ALQ_9ff1ec07', 'gdc_sample_type': 'Primary Tumor' } -C3N-03428.RNA-Seq.R2_L008.T C3N-03428 PDA RNA-Seq tumor CPT0226680011 190621_UNC32-K00270_0185_BH7G72BBXY_TGGTGGCA-TCCTGTAA_S31_L008_R2_001.fastq.gz 3974453516 FASTQ R2_L008 unaligned CPTAC3 deab0ab5-9f7c-44e6-85ee-ac6a9a7cab11 b046df42ee9751a29771a21d077d9f96 { 'aliquot_tag': 'ALQ_9ff1ec07', 'gdc_sample_type': 'Primary Tumor' } +C3N-03428.RNA-Seq.genomic.T.hg38 C3N-03428 PDA RNA-Seq tumor CPT0226680011 d6ec9651-473a-4e09-b857-7ee87e9ece95.rna_seq.genomic.gdc_realn.bam 8069722755 BAM genomic harmonized CPTAC3 52316ee4-0af6-4f8f-8183-5a9d7c6d74cd e4d90128f63f25bdfe9e092a092d6ba5 { 'aliquot_tag': 'ALQ_9ff1ec07', 'gdc_sample_type': 'Primary Tumor' } +C3N-03428.RNA-Seq.R1_L008.T C3N-03428 PDA RNA-Seq tumor CPT0226680011 190621_UNC32-K00270_0185_BH7G72BBXY_TGGTGGCA-TCCTGTAA_S31_L008_R1_001.fastq.gz 3720892004 FASTQ R1_L008 unaligned CPTAC3 d4ac5776-aedd-417d-acfd-936a62bd5b7d a16dc63f2f96d241c51d09915decb5a5 { 'aliquot_tag': 'ALQ_9ff1ec07', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03428.RNA-Seq.R2_L008.T C3N-03428 PDA RNA-Seq tumor CPT0226680011 190621_UNC32-K00270_0185_BH7G72BBXY_TGGTGGCA-TCCTGTAA_S31_L008_R2_001.fastq.gz 3974453516 FASTQ R2_L008 unaligned CPTAC3 deab0ab5-9f7c-44e6-85ee-ac6a9a7cab11 b046df42ee9751a29771a21d077d9f96 { 'aliquot_tag': 'ALQ_9ff1ec07', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-03428.RNA-Seq.transcriptome.T.hg38 C3N-03428 PDA RNA-Seq tumor CPT0226680011 d6ec9651-473a-4e09-b857-7ee87e9ece95.rna_seq.transcriptome.gdc_realn.bam 9925576945 BAM transcriptome harmonized CPTAC3 c9db942a-f4f9-480b-ba8c-de25ab68a0fa ce938a86c82ac55e645578edeb21d0d8 { 'aliquot_tag': 'ALQ_9ff1ec07', 'gdc_sample_type': 'Primary Tumor' } C3N-03428.WGS.N C3N-03428 PDA WGS blood_normal CPT0226720002 CPT0226720002.WholeGenome.RP-1303.bam 64105818552 BAM aligned CPTAC3 689cbb5c-de24-4211-a92c-74b7c42ed346 0e755d1f57852195102a03df30c8d483 { 'aliquot_tag': 'ALQ_9e0f47f8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03428.WGS.N.hg38 C3N-03428 PDA WGS blood_normal CPT0226720002 df3d862b-c249-43df-a730-792e40c866de_wgs_gdc_realn.bam 93356081387 BAM harmonized CPTAC3 98404d6e-1b67-4609-bac9-b26d04eff976 58f84264482b709ce5d9746b55c4286a { 'aliquot_tag': 'ALQ_9e0f47f8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35299,9 +37601,9 @@ C3N-03430.MethArray.Red.T C3N-03430 PDA Methylation Array tumor CPT0226650007 20 C3N-03430.miRNA-Seq.T C3N-03430 PDA miRNA-Seq tumor CPT0226650010 190813_UNC32-K00270_0196_AH5MCWBBXY_CAGATC_S36_L004_R1_001.unaln.bam 311889008 BAM unaligned CPTAC3 06aab8c5-097f-46a8-8997-ced55c40b803 b0e0f136b2ced0bbd27ba2f33ef13dc1 { 'aliquot_tag': 'ALQ_10661820', 'gdc_sample_type': 'Primary Tumor' } C3N-03430.miRNA-Seq.T.hg38 C3N-03430 PDA miRNA-Seq tumor CPT0226650010 c284beff-1380-4156-a90c-ba1d022f1e03_mirnaseq_gdc_realn.bam 348498633 BAM harmonized CPTAC3 3474adb1-bf9c-4dda-8527-33fef24a3d55 661711d54db9000f9525f889847b1d27 { 'aliquot_tag': 'ALQ_10661820', 'gdc_sample_type': 'Primary Tumor' } C3N-03430.RNA-Seq.chimeric.T.hg38 C3N-03430 PDA RNA-Seq tumor CPT0226650010 25c6d6bb-d2e7-4a87-9b9f-e42144618fd3.rna_seq.chimeric.gdc_realn.bam 111312047 BAM chimeric harmonized CPTAC3 479bcf08-6d36-4b84-b170-0e9a7ac17e21 5ffbec6dc535eaaa7b2a5e775067cd30 { 'aliquot_tag': 'ALQ_10661820', 'gdc_sample_type': 'Primary Tumor' } -C3N-03430.RNA-Seq.genomic.T.hg38 C3N-03430 PDA RNA-Seq tumor CPT0226650010 25c6d6bb-d2e7-4a87-9b9f-e42144618fd3.rna_seq.genomic.gdc_realn.bam 6631079726 BAM genomic harmonized CPTAC3 6bb132ba-fbfb-4c29-bcff-40bb68b50728 4549a0b784d3b3ecc2a94bf2f2427382 { 'aliquot_tag': 'ALQ_10661820', 'gdc_sample_type': 'Primary Tumor' } -C3N-03430.RNA-Seq.R1_L001.T C3N-03430 PDA RNA-Seq tumor CPT0226650010 190725_UNC32-K00270_0194_AH7HHFBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 2397546168 FASTQ R1_L001 unaligned CPTAC3 48bd5073-acb2-4ba5-8c6c-e0bea42b7012 3f8c62f879e28e558f9a7649ce5d2db0 { 'aliquot_tag': 'ALQ_10661820', 'gdc_sample_type': 'Primary Tumor' } -C3N-03430.RNA-Seq.R2_L001.T C3N-03430 PDA RNA-Seq tumor CPT0226650010 190725_UNC32-K00270_0194_AH7HHFBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 2370816951 FASTQ R2_L001 unaligned CPTAC3 8fe1f59a-76c6-42f0-b83e-8eeb928a0851 4981a0995db4a4229a7f4fb0d5fc8361 { 'aliquot_tag': 'ALQ_10661820', 'gdc_sample_type': 'Primary Tumor' } +C3N-03430.RNA-Seq.genomic.T.hg38 C3N-03430 PDA RNA-Seq tumor CPT0226650010 25c6d6bb-d2e7-4a87-9b9f-e42144618fd3.rna_seq.genomic.gdc_realn.bam 6631079726 BAM genomic harmonized CPTAC3 6d76451b-e7cc-4431-8cf1-bb574452022b 4549a0b784d3b3ecc2a94bf2f2427382 { 'aliquot_tag': 'ALQ_10661820', 'gdc_sample_type': 'Primary Tumor' } +C3N-03430.RNA-Seq.R1_L001.T C3N-03430 PDA RNA-Seq tumor CPT0226650010 190725_UNC32-K00270_0194_AH7HHFBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 2397546168 FASTQ R1_L001 unaligned CPTAC3 48bd5073-acb2-4ba5-8c6c-e0bea42b7012 3f8c62f879e28e558f9a7649ce5d2db0 { 'aliquot_tag': 'ALQ_10661820', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03430.RNA-Seq.R2_L001.T C3N-03430 PDA RNA-Seq tumor CPT0226650010 190725_UNC32-K00270_0194_AH7HHFBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 2370816951 FASTQ R2_L001 unaligned CPTAC3 8fe1f59a-76c6-42f0-b83e-8eeb928a0851 4981a0995db4a4229a7f4fb0d5fc8361 { 'aliquot_tag': 'ALQ_10661820', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-03430.RNA-Seq.transcriptome.T.hg38 C3N-03430 PDA RNA-Seq tumor CPT0226650010 25c6d6bb-d2e7-4a87-9b9f-e42144618fd3.rna_seq.transcriptome.gdc_realn.bam 5641096665 BAM transcriptome harmonized CPTAC3 3b933097-e6fb-4f90-9bae-a0d77d2c4108 691778ec7fb97c7d28dff9502eae84e6 { 'aliquot_tag': 'ALQ_10661820', 'gdc_sample_type': 'Primary Tumor' } C3N-03430.WGS.N C3N-03430 PDA WGS blood_normal CPT0226670002 CPT0226670002.WholeGenome.RP-1303.bam 67159181105 BAM aligned CPTAC3 e84df314-9b75-46d6-83c8-344559dcd0b8 30a72a01fcda87be57c5249b42f1eced { 'aliquot_tag': 'ALQ_9db31b2d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03430.WGS.N.hg38 C3N-03430 PDA WGS blood_normal CPT0226670002 d830fd81-eac7-4f0d-b5fa-c51509daf431_wgs_gdc_realn.bam 97642542361 BAM harmonized CPTAC3 7f08857f-fc3d-41c5-82af-28edd49df44b 77c496db585ca72d57fc98e708d66fbc { 'aliquot_tag': 'ALQ_9db31b2d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35316,12 +37618,15 @@ C3N-03433.MethArray.Red.T C3N-03433 HNSCC Methylation Array tumor CPT0246540006 C3N-03433.miRNA-Seq.T C3N-03433 HNSCC miRNA-Seq tumor CPT0246540009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCCCGA_S46_L007_R1_001.unaln.bam 154690817 BAM unaligned CPTAC3 580c152f-0bf9-44bc-b980-6598d4e7e533 b4aa28776988225aaa56a8ae887569e6 { 'aliquot_tag': 'ALQ_d3ac35c', 'gdc_sample_type': 'Primary Tumor' } C3N-03433.miRNA-Seq.T.hg38 C3N-03433 HNSCC miRNA-Seq tumor CPT0246540009 a962a8dd-31dc-4489-a272-455822f6b5ba_mirnaseq_gdc_realn.bam 176192367 BAM harmonized CPTAC3 29eba54f-25ca-485b-99bc-e9ea311f4640 b19e3a7528671918cd66ded1b730e7bf { 'aliquot_tag': 'ALQ_d3ac35c', 'gdc_sample_type': 'Primary Tumor' } C3N-03433.RNA-Seq.chimeric.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 6f059824-e488-46ce-84a2-b0523c9c9136.rna_seq.chimeric.gdc_realn.bam 29788071 BAM chimeric harmonized CPTAC3 633ff37c-9313-4da2-960f-0156a8329878 9d12d300c3814f965cac81f573c4cbdf { 'aliquot_tag': 'ALQ_d3ac35c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03433.RNA-Seq.chimeric.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 9f9b5cf1-f8cb-44b3-83df-c0904150b34b.rna_seq.chimeric.gdc_realn.bam 65873853 BAM chimeric harmonized CPTAC3 f7ef5403-705e-4a9f-b9e9-ae0d929a9dc9 ccf2ce8bb60909bbf5eaf0d3428af1ca { 'aliquot_tag': 'ALQ_2d906c28', 'gdc_sample_type': 'Primary Tumor' } C3N-03433.RNA-Seq.genomic.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 6f059824-e488-46ce-84a2-b0523c9c9136.rna_seq.genomic.gdc_realn.bam 7979331765 BAM genomic harmonized CPTAC3 aa8c0a9b-7405-4c24-9147-1a55616d6757 f03a1ca0110caf97d12af98f86a4836c { 'aliquot_tag': 'ALQ_d3ac35c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03433.RNA-Seq.R1_L006.T C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 190416_UNC32-K00270_0165_AH5JY2BBXY_GCAATGCA-GGAACGTT_S22_L006_R1_001.fastq.gz 3708802195 FASTQ R1_L006 unaligned CPTAC3 ed013c48-952a-4f72-ba08-175e6da76a1a 7aeea3c6ffc3ea4fbea9977c56d46be4 { 'aliquot_tag': 'ALQ_d3ac35c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03433.RNA-Seq.R1_.T C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 20210723_P2_E12_WB7988-plate2_S60_R1_001.fastq.gz 3721069148 FASTQ R1_ unaligned CPTAC3 3bceb11f-7a0f-404d-82bd-8807c6e2996d 2d6ed45c651aaa5ecd9f23417fa70349 { 'aliquot_tag': 'ALQ_2d906c28', 'gdc_sample_type': 'Primary Tumor' } -C3N-03433.RNA-Seq.R2_L006.T C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 190416_UNC32-K00270_0165_AH5JY2BBXY_GCAATGCA-GGAACGTT_S22_L006_R2_001.fastq.gz 4197303956 FASTQ R2_L006 unaligned CPTAC3 49070be9-0373-416d-9be7-d4940215d243 5e7ba1b92b76c3d1f80c7f17f0c6566d { 'aliquot_tag': 'ALQ_d3ac35c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03433.RNA-Seq.R2_.T C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 20210723_P2_E12_WB7988-plate2_S60_R2_001.fastq.gz 3972555233 FASTQ R2_ unaligned CPTAC3 d7ef5f90-8ea4-4ba3-822c-7c3c6cd85f0c 232239c0ab975ec71b0d166d49a267a7 { 'aliquot_tag': 'ALQ_2d906c28', 'gdc_sample_type': 'Primary Tumor' } +C3N-03433.RNA-Seq.genomic.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 9f9b5cf1-f8cb-44b3-83df-c0904150b34b.rna_seq.genomic.gdc_realn.bam 6731952855 BAM genomic harmonized CPTAC3 f5a33d09-baa5-4f09-aac7-ace9f92b407f fdf5fac8be8aa08e9f15c95948e588c0 { 'aliquot_tag': 'ALQ_2d906c28', 'gdc_sample_type': 'Primary Tumor' } +C3N-03433.RNA-Seq.R1_L006.T C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 190416_UNC32-K00270_0165_AH5JY2BBXY_GCAATGCA-GGAACGTT_S22_L006_R1_001.fastq.gz 3708802195 FASTQ R1_L006 unaligned CPTAC3 ed013c48-952a-4f72-ba08-175e6da76a1a 7aeea3c6ffc3ea4fbea9977c56d46be4 { 'aliquot_tag': 'ALQ_d3ac35c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03433.RNA-Seq.R2_L006.T C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 190416_UNC32-K00270_0165_AH5JY2BBXY_GCAATGCA-GGAACGTT_S22_L006_R2_001.fastq.gz 4197303956 FASTQ R2_L006 unaligned CPTAC3 49070be9-0373-416d-9be7-d4940215d243 5e7ba1b92b76c3d1f80c7f17f0c6566d { 'aliquot_tag': 'ALQ_d3ac35c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-03433.RNA-Seq.T C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 20210723_P2_E12_WB7988-plate2_S60_R1_001.fastq.gz 3721069148 FASTQ unaligned CPTAC3 3bceb11f-7a0f-404d-82bd-8807c6e2996d 2d6ed45c651aaa5ecd9f23417fa70349 +C3N-03433.RNA-Seq.T C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 20210723_P2_E12_WB7988-plate2_S60_R2_001.fastq.gz 3972555233 FASTQ unaligned CPTAC3 d7ef5f90-8ea4-4ba3-822c-7c3c6cd85f0c 232239c0ab975ec71b0d166d49a267a7 C3N-03433.RNA-Seq.transcriptome.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0246540009 6f059824-e488-46ce-84a2-b0523c9c9136.rna_seq.transcriptome.gdc_realn.bam 9747723758 BAM transcriptome harmonized CPTAC3 7f97baca-fd0c-4045-9150-f8336245d206 c2447a9ba58869bd5428006e32a0b32b { 'aliquot_tag': 'ALQ_d3ac35c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03433.RNA-Seq.transcriptome.T.hg38 C3N-03433 HNSCC RNA-Seq tumor CPT0315320011 9f9b5cf1-f8cb-44b3-83df-c0904150b34b.rna_seq.transcriptome.gdc_realn.bam 5721998501 BAM transcriptome harmonized CPTAC3 a103372c-5db1-4ad0-a149-14d15d5637d3 7ea7a47fbd4d744ba8be525b72d59278 { 'aliquot_tag': 'ALQ_2d906c28', 'gdc_sample_type': 'Primary Tumor' } C3N-03433.WGS.N C3N-03433 HNSCC WGS blood_normal CPT0246580002 CPT0246580002.WholeGenome.RP-1303.bam 62828333389 BAM aligned CPTAC3 b665f9e7-ed8b-4cdd-a99d-4adac88a6281 bb70d43d85fe8a2f2825b3915f88efd7 { 'aliquot_tag': 'ALQ_5f18f7d5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03433.WGS.N.hg38 C3N-03433 HNSCC WGS blood_normal CPT0246580002 f6da68ae-560b-4c3b-9491-3de4f4e258eb_wgs_gdc_realn.bam 92639762512 BAM harmonized CPTAC3 7b2b52f2-aa0c-4549-8517-79b95b8ae273 9ed15abbc79de596a338e694694f0928 { 'aliquot_tag': 'ALQ_5f18f7d5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03433.WGS.T C3N-03433 HNSCC WGS tumor CPT0246540006 CPT0246540006.WholeGenome.RP-1303.bam 85106433978 BAM aligned CPTAC3 3b3f354b-1b91-4286-a239-ba41ead91886 e4dc0cf326a12a1c5905ab5d5d7a9af8 { 'aliquot_tag': 'ALQ_9d85decd', 'gdc_sample_type': 'Primary Tumor' } @@ -35330,16 +37635,19 @@ C3N-03433.WXS.N C3N-03433 HNSCC WXS blood_normal CPT0246580002 CPT0246580002.Who C3N-03433.WXS.N.hg38 C3N-03433 HNSCC WXS blood_normal CPT0246580002 f6da68ae-560b-4c3b-9491-3de4f4e258eb_wxs_gdc_realn.bam 33418519250 BAM harmonized CPTAC3 699303ee-1e27-4e62-b7cb-d9988bd24dda b50667517b56abf92ec37634ba195da7 { 'aliquot_tag': 'ALQ_5f18f7d5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03433.WXS.T C3N-03433 HNSCC WXS tumor CPT0246540006 CPT0246540006.WholeExome.RP-1303.bam 33681589011 BAM aligned CPTAC3 758ba410-a829-4d2c-9339-504a69ca8d2f 812389a3e816114327e811a30e8c55c0 { 'aliquot_tag': 'ALQ_9d85decd', 'gdc_sample_type': 'Primary Tumor' } C3N-03433.WXS.T.hg38 C3N-03433 HNSCC WXS tumor CPT0246540006 9b9514c9-9703-4749-8826-8e416ab90086_wxs_gdc_realn.bam 45754644843 BAM harmonized CPTAC3 6296db9d-c596-4368-a5b2-0da9decc468c 680e3ae05a0cab4a5ebb9c2acc7ddc15 { 'aliquot_tag': 'ALQ_9d85decd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03438.RNA-Seq.R1_.T C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 20210729_P3_H5_WB7988-Plate3_S89_R1_001.fastq.gz 3607910603 FASTQ R1_ unaligned CPTAC3 a81bd3fe-db96-4afd-9bab-fc3ac0b8ba30 e9499c0bc4448c311103768f3c994275 { 'aliquot_tag': 'ALQ_b9d6966a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03438.RNA-Seq.R2_.T C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 20210729_P3_H5_WB7988-Plate3_S89_R2_001.fastq.gz 3739843122 FASTQ R2_ unaligned CPTAC3 acbe8b30-2dff-4b1d-a4c9-8d8c2a66af6c 8b08674c1e0da00396803b4b9f3693dd { 'aliquot_tag': 'ALQ_b9d6966a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03438.RNA-Seq.chimeric.T.hg38 C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 3dc24ec9-a433-49b4-b558-44d651b2059a.rna_seq.chimeric.gdc_realn.bam 117622750 BAM chimeric harmonized CPTAC3 9ab97120-b3c5-45f8-b86d-9f8a0eea6937 5cb6c5a791824ca85f954b631502f4ce { 'aliquot_tag': 'ALQ_b9d6966a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03438.RNA-Seq.genomic.T.hg38 C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 3dc24ec9-a433-49b4-b558-44d651b2059a.rna_seq.genomic.gdc_realn.bam 5435031485 BAM genomic harmonized CPTAC3 26981751-e14c-40ae-b174-ef0c2b2b0ca2 aab7f10bfae165a0b41603c7869863df { 'aliquot_tag': 'ALQ_b9d6966a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03438.RNA-Seq.T C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 20210729_P3_H5_WB7988-Plate3_S89_R1_001.fastq.gz 3607910603 FASTQ unaligned CPTAC3 a81bd3fe-db96-4afd-9bab-fc3ac0b8ba30 e9499c0bc4448c311103768f3c994275 +C3N-03438.RNA-Seq.T C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 20210729_P3_H5_WB7988-Plate3_S89_R2_001.fastq.gz 3739843122 FASTQ unaligned CPTAC3 acbe8b30-2dff-4b1d-a4c9-8d8c2a66af6c 8b08674c1e0da00396803b4b9f3693dd +C3N-03438.RNA-Seq.transcriptome.T.hg38 C3N-03438 HNSCC RNA-Seq tumor CPT0353820001 3dc24ec9-a433-49b4-b558-44d651b2059a.rna_seq.transcriptome.gdc_realn.bam 3896982230 BAM transcriptome harmonized CPTAC3 8fce4ff2-a367-4086-837a-e4097270001f 78183288e3292cff1640239a6fd77959 { 'aliquot_tag': 'ALQ_b9d6966a', 'gdc_sample_type': 'Primary Tumor' } C3N-03439.MethArray.Green.T C3N-03439 PDA Methylation Array tumor CPT0246260010 203561620095_R01C01_Grn.idat 13676216 IDAT Green NA CPTAC3 bf67fc59-9188-4e92-9c69-c0c635be60e7 e55ee7ed28efb444def17b1b48694592 { 'aliquot_tag': 'ALQ_a382961', 'gdc_sample_type': 'Primary Tumor' } C3N-03439.MethArray.Red.T C3N-03439 PDA Methylation Array tumor CPT0246260010 203561620095_R01C01_Red.idat 13676216 IDAT Red NA CPTAC3 dd25ef84-d242-4962-815c-9a76bc282df3 e14d6ad029d2b7a39466bb9c9fdec9b7 { 'aliquot_tag': 'ALQ_a382961', 'gdc_sample_type': 'Primary Tumor' } C3N-03439.miRNA-Seq.T C3N-03439 PDA miRNA-Seq tumor CPT0246260007 190712_UNC32-K00270_0192_BH7HL3BBXY_TACAGC_S19_L004_R1_001.unaln.bam 209647151 BAM unaligned CPTAC3 6a6f1bdf-3399-4258-98b3-af71700678fe f900c8c198016e788890901b72ec90c3 { 'aliquot_tag': 'ALQ_8d478d83', 'gdc_sample_type': 'Primary Tumor' } C3N-03439.miRNA-Seq.T.hg38 C3N-03439 PDA miRNA-Seq tumor CPT0246260007 cfe81935-c97e-464c-bf66-e21e3856757e_mirnaseq_gdc_realn.bam 241526043 BAM harmonized CPTAC3 a51e8bae-1604-4095-91cb-0a21c9bdd62d 0d045e02b0a5a6b27f4195944865c61c { 'aliquot_tag': 'ALQ_8d478d83', 'gdc_sample_type': 'Primary Tumor' } C3N-03439.RNA-Seq.chimeric.T.hg38 C3N-03439 PDA RNA-Seq tumor CPT0246260007 c9503ca7-e20f-46c9-92a4-6a6f637adfc5.rna_seq.chimeric.gdc_realn.bam 29189824 BAM chimeric harmonized CPTAC3 bcc48430-2bc7-43c0-8ead-f4a821a1cbce 16ca99c4bc07bb32910edf71fb41a510 { 'aliquot_tag': 'ALQ_8d478d83', 'gdc_sample_type': 'Primary Tumor' } -C3N-03439.RNA-Seq.genomic.T.hg38 C3N-03439 PDA RNA-Seq tumor CPT0246260007 c9503ca7-e20f-46c9-92a4-6a6f637adfc5.rna_seq.genomic.gdc_realn.bam 7904147192 BAM genomic harmonized CPTAC3 54e0f6c9-cab0-441f-8921-714f742aa764 f7a522e04ebca410f887d4e2b05a72fa { 'aliquot_tag': 'ALQ_8d478d83', 'gdc_sample_type': 'Primary Tumor' } -C3N-03439.RNA-Seq.R1_L002.T C3N-03439 PDA RNA-Seq tumor CPT0246260007 190702_UNC32-K00270_0188_BH7CLJBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3651426360 FASTQ R1_L002 unaligned CPTAC3 733cff74-fce8-4ca0-8419-345f3b8f9e32 8b55ae2102ca748c115b4d94a7c10a8e { 'aliquot_tag': 'ALQ_8d478d83', 'gdc_sample_type': 'Primary Tumor' } -C3N-03439.RNA-Seq.R2_L002.T C3N-03439 PDA RNA-Seq tumor CPT0246260007 190702_UNC32-K00270_0188_BH7CLJBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 4218278823 FASTQ R2_L002 unaligned CPTAC3 8dba4a07-6c9f-435d-a734-c00d9700b809 33253889f7e0463873e069deb5e75f00 { 'aliquot_tag': 'ALQ_8d478d83', 'gdc_sample_type': 'Primary Tumor' } +C3N-03439.RNA-Seq.genomic.T.hg38 C3N-03439 PDA RNA-Seq tumor CPT0246260007 c9503ca7-e20f-46c9-92a4-6a6f637adfc5.rna_seq.genomic.gdc_realn.bam 7904147192 BAM genomic harmonized CPTAC3 50b35bf4-cb86-4dc0-b8f7-2ec4563cc2ac f7a522e04ebca410f887d4e2b05a72fa { 'aliquot_tag': 'ALQ_8d478d83', 'gdc_sample_type': 'Primary Tumor' } +C3N-03439.RNA-Seq.R1_L002.T C3N-03439 PDA RNA-Seq tumor CPT0246260007 190702_UNC32-K00270_0188_BH7CLJBBXY_GTATGTTC-AACAGGAA_S7_L002_R1_001.fastq.gz 3651426360 FASTQ R1_L002 unaligned CPTAC3 733cff74-fce8-4ca0-8419-345f3b8f9e32 8b55ae2102ca748c115b4d94a7c10a8e { 'aliquot_tag': 'ALQ_8d478d83', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03439.RNA-Seq.R2_L002.T C3N-03439 PDA RNA-Seq tumor CPT0246260007 190702_UNC32-K00270_0188_BH7CLJBBXY_GTATGTTC-AACAGGAA_S7_L002_R2_001.fastq.gz 4218278823 FASTQ R2_L002 unaligned CPTAC3 8dba4a07-6c9f-435d-a734-c00d9700b809 33253889f7e0463873e069deb5e75f00 { 'aliquot_tag': 'ALQ_8d478d83', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-03439.RNA-Seq.transcriptome.T.hg38 C3N-03439 PDA RNA-Seq tumor CPT0246260007 c9503ca7-e20f-46c9-92a4-6a6f637adfc5.rna_seq.transcriptome.gdc_realn.bam 10727802900 BAM transcriptome harmonized CPTAC3 76a5a913-1b84-44ce-80f0-aea9f28a3d5d b533e02942fe6995c38ef7fd285c50f8 { 'aliquot_tag': 'ALQ_8d478d83', 'gdc_sample_type': 'Primary Tumor' } C3N-03439.WGS.N C3N-03439 PDA WGS blood_normal CPT0246300002 CPT0246300002.WholeGenome.RP-1303.bam 70732851662 BAM aligned CPTAC3 f97075a3-df6a-4208-ac02-2f9e7719ec33 86f90934f5be4583726ce59fd1b42b15 { 'aliquot_tag': 'ALQ_b9315f09', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03439.WGS.N.hg38 C3N-03439 PDA WGS blood_normal CPT0246300002 b16d1725-592b-4706-8e06-3f82e29aa80f_wgs_gdc_realn.bam 103714929548 BAM harmonized CPTAC3 95dd370f-fc32-48c8-b01d-b2ef95a3dd8f cc1efde267e1621281a727949d24efc0 { 'aliquot_tag': 'ALQ_b9315f09', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35359,12 +37667,12 @@ C3N-03440.miRNA-Seq.T C3N-03440 PDA miRNA-Seq tumor CPT0246210007 190712_UNC32-K C3N-03440.miRNA-Seq.T.hg38 C3N-03440 PDA miRNA-Seq tumor CPT0246210007 84854605-fa1e-4b14-9786-0de6323df9a4_mirnaseq_gdc_realn.bam 244230165 BAM harmonized CPTAC3 a9581d80-c6f2-45b5-b969-460af965bd3b de9907a2436d9afbb51978bb976d14c9 { 'aliquot_tag': 'ALQ_3f675193', 'gdc_sample_type': 'Primary Tumor' } C3N-03440.RNA-Seq.chimeric.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 f7a96787-1062-42a9-9339-36e2836000d0.rna_seq.chimeric.gdc_realn.bam 17972583 BAM chimeric harmonized CPTAC3 c92d36a7-2f0b-4ae5-8c43-498e44e1ede5 528a8a5d502b248564f7f157281ee06f { 'aliquot_tag': 'ALQ_ffb88fa1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03440.RNA-Seq.chimeric.T.hg38 C3N-03440 PDA RNA-Seq tumor CPT0246210007 dbe35910-dcc4-4443-ba50-06193bf108f9.rna_seq.chimeric.gdc_realn.bam 34078626 BAM chimeric harmonized CPTAC3 1c90094f-757e-4c86-a22a-35bdc731f7e0 31a984b945fa42a2d1447bdf1b3d86e9 { 'aliquot_tag': 'ALQ_3f675193', 'gdc_sample_type': 'Primary Tumor' } -C3N-03440.RNA-Seq.genomic.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 f7a96787-1062-42a9-9339-36e2836000d0.rna_seq.genomic.gdc_realn.bam 6120920674 BAM genomic harmonized CPTAC3 13b3c685-0681-43b8-8e7b-ceb9a2818430 6ad7935c8c6bca96c4b24bbb1a6f5ce9 { 'aliquot_tag': 'ALQ_ffb88fa1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03440.RNA-Seq.genomic.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 f7a96787-1062-42a9-9339-36e2836000d0.rna_seq.genomic.gdc_realn.bam 6120920674 BAM genomic harmonized CPTAC3 35c76e83-8cd6-4063-ab84-62a887a3197f 6ad7935c8c6bca96c4b24bbb1a6f5ce9 { 'aliquot_tag': 'ALQ_ffb88fa1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03440.RNA-Seq.genomic.T.hg38 C3N-03440 PDA RNA-Seq tumor CPT0246210007 dbe35910-dcc4-4443-ba50-06193bf108f9.rna_seq.genomic.gdc_realn.bam 9811573427 BAM genomic harmonized CPTAC3 058f4a41-89d7-480f-89d1-0327e8d278df 63569727f0cb626352cb32b3c0c7e983 { 'aliquot_tag': 'ALQ_3f675193', 'gdc_sample_type': 'Primary Tumor' } -C3N-03440.RNA-Seq.R1_L002.T C3N-03440 PDA RNA-Seq tumor CPT0246210007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGCTATGT-TCCGACAC_S8_L002_R1_001.fastq.gz 4462547960 FASTQ R1_L002 unaligned CPTAC3 4ad2b663-f29f-4a07-a7a9-f8875933d4c6 35f54179ca8176fa1ea3166332cfdab9 { 'aliquot_tag': 'ALQ_3f675193', 'gdc_sample_type': 'Primary Tumor' } -C3N-03440.RNA-Seq.R1_L003.A C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 190715_UNC31-K00269_0232_BH7H7CBBXY_TCGTAGTG-AGACTTGG_S10_L003_R1_001.fastq.gz 2696677218 FASTQ R1_L003 unaligned CPTAC3 f74f07bc-dcde-4f6e-a8e6-97dccda7aaaa a284295ea46ca4c306207a3cd4279ec9 { 'aliquot_tag': 'ALQ_ffb88fa1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03440.RNA-Seq.R2_L002.T C3N-03440 PDA RNA-Seq tumor CPT0246210007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGCTATGT-TCCGACAC_S8_L002_R2_001.fastq.gz 5131330458 FASTQ R2_L002 unaligned CPTAC3 37012691-a5d6-461e-b40f-39ea45f9d68a 9929dbe871a50c7de6c9af8d400e3593 { 'aliquot_tag': 'ALQ_3f675193', 'gdc_sample_type': 'Primary Tumor' } -C3N-03440.RNA-Seq.R2_L003.A C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 190715_UNC31-K00269_0232_BH7H7CBBXY_TCGTAGTG-AGACTTGG_S10_L003_R2_001.fastq.gz 2942208621 FASTQ R2_L003 unaligned CPTAC3 4b27f03b-37e8-4cd4-bb29-6f9dd2f88a49 0bc62fed98f156868a3f41e293673b1e { 'aliquot_tag': 'ALQ_ffb88fa1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03440.RNA-Seq.R1_L002.T C3N-03440 PDA RNA-Seq tumor CPT0246210007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGCTATGT-TCCGACAC_S8_L002_R1_001.fastq.gz 4462547960 FASTQ R1_L002 unaligned CPTAC3 4ad2b663-f29f-4a07-a7a9-f8875933d4c6 35f54179ca8176fa1ea3166332cfdab9 { 'aliquot_tag': 'ALQ_3f675193', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03440.RNA-Seq.R1_L003.A C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 190715_UNC31-K00269_0232_BH7H7CBBXY_TCGTAGTG-AGACTTGG_S10_L003_R1_001.fastq.gz 2696677218 FASTQ R1_L003 unaligned CPTAC3 f74f07bc-dcde-4f6e-a8e6-97dccda7aaaa a284295ea46ca4c306207a3cd4279ec9 { 'aliquot_tag': 'ALQ_ffb88fa1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03440.RNA-Seq.R2_L002.T C3N-03440 PDA RNA-Seq tumor CPT0246210007 190702_UNC32-K00270_0188_BH7CLJBBXY_CGCTATGT-TCCGACAC_S8_L002_R2_001.fastq.gz 5131330458 FASTQ R2_L002 unaligned CPTAC3 37012691-a5d6-461e-b40f-39ea45f9d68a 9929dbe871a50c7de6c9af8d400e3593 { 'aliquot_tag': 'ALQ_3f675193', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03440.RNA-Seq.R2_L003.A C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 190715_UNC31-K00269_0232_BH7H7CBBXY_TCGTAGTG-AGACTTGG_S10_L003_R2_001.fastq.gz 2942208621 FASTQ R2_L003 unaligned CPTAC3 4b27f03b-37e8-4cd4-bb29-6f9dd2f88a49 0bc62fed98f156868a3f41e293673b1e { 'aliquot_tag': 'ALQ_ffb88fa1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3N-03440.RNA-Seq.transcriptome.A.hg38 C3N-03440 PDA RNA-Seq tissue_normal CPT0246220010 f7a96787-1062-42a9-9339-36e2836000d0.rna_seq.transcriptome.gdc_realn.bam 7359376506 BAM transcriptome harmonized CPTAC3 b242e4d6-c20f-40fb-907a-560ab72a8d34 ec15a52aead2d1d38074b04f78a24749 { 'aliquot_tag': 'ALQ_ffb88fa1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03440.RNA-Seq.transcriptome.T.hg38 C3N-03440 PDA RNA-Seq tumor CPT0246210007 dbe35910-dcc4-4443-ba50-06193bf108f9.rna_seq.transcriptome.gdc_realn.bam 13467255123 BAM transcriptome harmonized CPTAC3 6d290755-02a3-4116-9d29-674a00336157 d9342c75999370d5ffeca16eae45a9f4 { 'aliquot_tag': 'ALQ_3f675193', 'gdc_sample_type': 'Primary Tumor' } C3N-03440.WGS.N C3N-03440 PDA WGS blood_normal CPT0246250002 CPT0246250002.WholeGenome.RP-1303.bam 62651712138 BAM aligned CPTAC3 8356683a-24bf-4f4f-ac01-7a256165f422 8f69b7517ea52abec65f5fc07da84133 { 'aliquot_tag': 'ALQ_ba8d03dc', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35387,12 +37695,12 @@ C3N-03441.miRNA-Seq.T C3N-03441 LSCC miRNA-Seq tumor CPT0245880009 190206_UNC31- C3N-03441.miRNA-Seq.T.hg38 C3N-03441 LSCC miRNA-Seq tumor CPT0245880009 741a2a7a-3f4e-4b72-bb89-fedb87a19526_mirnaseq_gdc_realn.bam 192020106 BAM harmonized CPTAC3 6fddab11-686d-4c9c-85fb-b55bed6a66d1 33045f30de0ec387d3590d1ef4dc46cc { 'aliquot_tag': 'ALQ_45bc271e', 'gdc_sample_type': 'Primary Tumor' } C3N-03441.RNA-Seq.chimeric.A.hg38 C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 b860d6fe-ca15-4f58-9617-beea194d2129.rna_seq.chimeric.gdc_realn.bam 213189618 BAM chimeric harmonized CPTAC3 be23c486-6448-4617-bf0c-5f9a30aa5b10 502091f4a0380c76c95a8b03a672ef36 { 'aliquot_tag': 'ALQ_78dc0eae', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03441.RNA-Seq.chimeric.T.hg38 C3N-03441 LSCC RNA-Seq tumor CPT0245880009 e4497d02-59d3-40b9-8188-06052a40f38f.rna_seq.chimeric.gdc_realn.bam 238270411 BAM chimeric harmonized CPTAC3 befbb703-172d-43c6-b5f8-e624b5c546bc 4eca5a693753c31f88ca7a5438db8f5e { 'aliquot_tag': 'ALQ_45bc271e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03441.RNA-Seq.genomic.A.hg38 C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 b860d6fe-ca15-4f58-9617-beea194d2129.rna_seq.genomic.gdc_realn.bam 7729759537 BAM genomic harmonized CPTAC3 212d980a-6f31-438c-84c5-5cdaf72e9b4c c210efd59f05e6be35fd8ebbe40d386f { 'aliquot_tag': 'ALQ_78dc0eae', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03441.RNA-Seq.genomic.A.hg38 C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 b860d6fe-ca15-4f58-9617-beea194d2129.rna_seq.genomic.gdc_realn.bam 7729759537 BAM genomic harmonized CPTAC3 e17f08bd-a155-4317-bef8-485fc12b6586 c210efd59f05e6be35fd8ebbe40d386f { 'aliquot_tag': 'ALQ_78dc0eae', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03441.RNA-Seq.genomic.T.hg38 C3N-03441 LSCC RNA-Seq tumor CPT0245880009 e4497d02-59d3-40b9-8188-06052a40f38f.rna_seq.genomic.gdc_realn.bam 10003188284 BAM genomic harmonized CPTAC3 5d47b10f-b838-4bb0-acf5-84a82a0b70c0 6bc223012113825440c5e8318e53646a { 'aliquot_tag': 'ALQ_45bc271e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03441.RNA-Seq.R1_L003.T C3N-03441 LSCC RNA-Seq tumor CPT0245880009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGGCC_S10_L003_R1_001.fastq.gz 4845477485 FASTQ R1_L003 unaligned CPTAC3 f1885822-bba2-4b9d-be2d-ff1092f16edf 49ebb917a6bccdc17af1828a816d501e { 'aliquot_tag': 'ALQ_45bc271e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03441.RNA-Seq.R1_L004.A C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTTTCG_S15_L004_R1_001.fastq.gz 3544778049 FASTQ R1_L004 unaligned CPTAC3 211d898b-61a9-44a6-9eda-23a3f4397456 7d5f140c3cc5ebb0e54bac29466cc795 { 'aliquot_tag': 'ALQ_78dc0eae', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03441.RNA-Seq.R2_L003.T C3N-03441 LSCC RNA-Seq tumor CPT0245880009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGGCC_S10_L003_R2_001.fastq.gz 5285164029 FASTQ R2_L003 unaligned CPTAC3 5ade9763-0f5d-46d5-93bc-8dab152f682d 586fd37271d79428e449c5de7d595e6b { 'aliquot_tag': 'ALQ_45bc271e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03441.RNA-Seq.R2_L004.A C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTTTCG_S15_L004_R2_001.fastq.gz 4021739315 FASTQ R2_L004 unaligned CPTAC3 be7e2f2d-13b5-4a91-b15b-4f9e3aeec7f6 a666fd447f20b110df2e06b29e6717c6 { 'aliquot_tag': 'ALQ_78dc0eae', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03441.RNA-Seq.R1_L003.T C3N-03441 LSCC RNA-Seq tumor CPT0245880009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGGCC_S10_L003_R1_001.fastq.gz 4845477485 FASTQ R1_L003 unaligned CPTAC3 f1885822-bba2-4b9d-be2d-ff1092f16edf 49ebb917a6bccdc17af1828a816d501e { 'aliquot_tag': 'ALQ_45bc271e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03441.RNA-Seq.R1_L004.A C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTTTCG_S15_L004_R1_001.fastq.gz 3544778049 FASTQ R1_L004 unaligned CPTAC3 211d898b-61a9-44a6-9eda-23a3f4397456 7d5f140c3cc5ebb0e54bac29466cc795 { 'aliquot_tag': 'ALQ_78dc0eae', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03441.RNA-Seq.R2_L003.T C3N-03441 LSCC RNA-Seq tumor CPT0245880009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGGCC_S10_L003_R2_001.fastq.gz 5285164029 FASTQ R2_L003 unaligned CPTAC3 5ade9763-0f5d-46d5-93bc-8dab152f682d 586fd37271d79428e449c5de7d595e6b { 'aliquot_tag': 'ALQ_45bc271e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-03441.RNA-Seq.R2_L004.A C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTTTCG_S15_L004_R2_001.fastq.gz 4021739315 FASTQ R2_L004 unaligned CPTAC3 be7e2f2d-13b5-4a91-b15b-4f9e3aeec7f6 a666fd447f20b110df2e06b29e6717c6 { 'aliquot_tag': 'ALQ_78dc0eae', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3N-03441.RNA-Seq.transcriptome.A.hg38 C3N-03441 LSCC RNA-Seq tissue_normal CPT0245890009 b860d6fe-ca15-4f58-9617-beea194d2129.rna_seq.transcriptome.gdc_realn.bam 8738975040 BAM transcriptome harmonized CPTAC3 e280cf77-97c7-463f-bd05-d2195ae5d31f 0d0dbc0a8ef55f18291f414fb9a2a01c { 'aliquot_tag': 'ALQ_78dc0eae', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03441.RNA-Seq.transcriptome.T.hg38 C3N-03441 LSCC RNA-Seq tumor CPT0245880009 e4497d02-59d3-40b9-8188-06052a40f38f.rna_seq.transcriptome.gdc_realn.bam 11925607780 BAM transcriptome harmonized CPTAC3 879c1719-2a1b-4138-8f22-90b9c7069f1d c87045bfcc6f0b217f7034017ac70254 { 'aliquot_tag': 'ALQ_45bc271e', 'gdc_sample_type': 'Primary Tumor' } C3N-03441.WGS.N C3N-03441 LSCC WGS blood_normal CPT0245920002 CPT0245920002.WholeGenome.RP-1303.bam 59342808443 BAM aligned CPTAC3 a4c31365-e18a-485d-af8e-9a50fe6d2929 abe7f354f2676bb1a5f5dc928c7fcc2b { 'aliquot_tag': 'ALQ_53823592', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35408,18 +37716,23 @@ C3N-03441.WXS.T.hg38 C3N-03441 LSCC WXS tumor CPT0245880006 32dd99c7-d21a-4c9d-9 C3N-03446.MethArray.Green.A C3N-03446 GBM Methylation Array tissue_normal CPT0404840014 205555390119_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 88d36cbf-69a2-4b05-ab54-8493bf8b254c b5dac09dd7986296fb538705cb293b38 { 'aliquot_tag': 'ALQ_b6c1fb27', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03446.MethArray.Red.A C3N-03446 GBM Methylation Array tissue_normal CPT0404840014 205555390119_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 22efb14e-4b7e-4e1e-8a0a-4ead7b9d513e 27789f0a5e69044fb22353e0d1773e83 { 'aliquot_tag': 'ALQ_b6c1fb27', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03446.miRNA-Seq.A C3N-03446 GBM miRNA-Seq tissue_normal CPT0404840017 210702_UNC32-K00270_0289_AHKJ22BBXY_TATAAT_S36_L005_R1_001.unaln.bam 316093048 BAM unaligned CPTAC3 26c61e95-8e69-4aac-8093-f950400fac1e 3ce29dce686d5d5a92493516b4475564 { 'aliquot_tag': 'ALQ_2fc8aa9d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03446.RNA-Seq.R1_L004.A C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R1_001.fastq.gz 3964234824 FASTQ R1_L004 unaligned CPTAC3 5a9e30f7-2202-4950-a643-61f2b2a1579d d80f04a2683316e2659b06508edc4196 { 'aliquot_tag': 'ALQ_2fc8aa9d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03446.RNA-Seq.R2_L004.A C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R2_001.fastq.gz 4086584855 FASTQ R2_L004 unaligned CPTAC3 2c66f195-9484-4900-9338-d02c9392ee59 bd04445d03281a0ef5a319f077c4fc8a { 'aliquot_tag': 'ALQ_2fc8aa9d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03446.miRNA-Seq.A.hg38 C3N-03446 GBM miRNA-Seq tissue_normal CPT0404840017 49b74a33-dcd8-4fe6-ac80-93633aeefa24_mirnaseq_gdc_realn.bam 338824392 BAM harmonized CPTAC3 3dabf648-bda9-45e7-b7dd-35dd422dbba5 fb93f1f2bb9cf90ec2e016e19bfdaa36 { 'aliquot_tag': 'ALQ_2fc8aa9d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03446.RNA-Seq.chimeric.A.hg38 C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 f1df7d1c-907e-4644-ae52-a0b2f208b86f.rna_seq.chimeric.gdc_realn.bam 344655729 BAM chimeric harmonized CPTAC3 1c88c488-f89d-49cf-a806-2b01bb1bc07c 73c61e0a58771825b098a3441b14d84d { 'aliquot_tag': 'ALQ_2fc8aa9d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03446.RNA-Seq.genomic.A.hg38 C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 f1df7d1c-907e-4644-ae52-a0b2f208b86f.rna_seq.genomic.gdc_realn.bam 8685139216 BAM genomic harmonized CPTAC3 1fc41680-8893-44e4-9c54-4d3eda319053 0c369044438f39893f67321c36760dc1 { 'aliquot_tag': 'ALQ_2fc8aa9d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03446.RNA-Seq.R1_L004.A C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R1_001.fastq.gz 3964234824 FASTQ R1_L004 unaligned CPTAC3 5a9e30f7-2202-4950-a643-61f2b2a1579d d80f04a2683316e2659b06508edc4196 { 'aliquot_tag': 'ALQ_2fc8aa9d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03446.RNA-Seq.R2_L004.A C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R2_001.fastq.gz 4086584855 FASTQ R2_L004 unaligned CPTAC3 2c66f195-9484-4900-9338-d02c9392ee59 bd04445d03281a0ef5a319f077c4fc8a { 'aliquot_tag': 'ALQ_2fc8aa9d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-03446.RNA-Seq.transcriptome.A.hg38 C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 f1df7d1c-907e-4644-ae52-a0b2f208b86f.rna_seq.transcriptome.gdc_realn.bam 8553390343 BAM transcriptome harmonized CPTAC3 aca75e9b-0f8d-4dfc-a4be-aee908746d60 05b9e0f61fe11eca3d83888d2f519541 { 'aliquot_tag': 'ALQ_2fc8aa9d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03446.WXS.A C3N-03446 GBM WXS tissue_normal CPT0404840014 CPT0404840014.WholeExome.RP-1303.bam 22291412082 BAM aligned CPTAC3 faf88db0-b0df-4b2b-9dfa-4bcd0b1ba7af 96990bbca730a0929138c7ebf0f03f09 { 'aliquot_tag': 'ALQ_b6c1fb27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03446.WXS.A.hg38 C3N-03446 GBM WXS tissue_normal CPT0404840014 2ffb059e-abc1-48e4-8d8f-de903f6cabe3_wxs_gdc_realn.bam 31302407798 BAM harmonized CPTAC3 6bc6c3bf-8a28-46ab-9f0c-188e00dc39b7 711f48de972f17317d486ef53ef94519 { 'aliquot_tag': 'ALQ_b6c1fb27', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03448.MethArray.Green.T C3N-03448 GBM Methylation Array tumor CPT0225870006 204372030127_R02C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0695eb5d-f8ff-4fa1-88ea-e2b4348583f1 8748ce07993cb7e7e05e622a8502101a { 'aliquot_tag': 'ALQ_913ca4d9', 'gdc_sample_type': 'Primary Tumor' } C3N-03448.MethArray.Red.T C3N-03448 GBM Methylation Array tumor CPT0225870006 204372030127_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 58b8baf0-e2d0-4d78-b683-175aa024940f ce8441014e6623091a86ab6082bf0661 { 'aliquot_tag': 'ALQ_913ca4d9', 'gdc_sample_type': 'Primary Tumor' } C3N-03448.miRNA-Seq.T C3N-03448 GBM miRNA-Seq tumor CPT0225870013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATTTT_S35_L008_R1_001.unaln.bam 301304798 BAM unaligned CPTAC3 ed576d30-32bf-49ac-8c9e-578a83e34954 0248c4f80b6d477a2c8a02d234b212b9 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor' } C3N-03448.miRNA-Seq.T.hg38 C3N-03448 GBM miRNA-Seq tumor CPT0225870013 eeec2ff6-2b25-402c-ad52-d9ab89e5ede0_mirnaseq_gdc_realn.bam 327854229 BAM harmonized CPTAC3 640768a1-ee61-4959-8019-5b652de1bec9 e7975942bb304e5ed73ff7b4ceb777a2 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor' } -C3N-03448.RNA-Seq.chimeric.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 00fbcb5c-f942-4ccd-9fd4-462356517cd6.rna_seq.chimeric.gdc_realn.bam 38116887 BAM chimeric harmonized CPTAC3 0a6c4f9e-fc14-4862-a7e2-ffa7cc42c807 fbb13015071b3a994d47655d3cae0b55 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor' } -C3N-03448.RNA-Seq.genomic.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 00fbcb5c-f942-4ccd-9fd4-462356517cd6.rna_seq.genomic.gdc_realn.bam 7963651361 BAM genomic harmonized CPTAC3 8b141f16-e5be-48cf-b553-8bde4492d514 c2b216a3f6228cac11d4da32dbcb94f0 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor' } -C3N-03448.RNA-Seq.R1_L004.T C3N-03448 GBM RNA-Seq tumor CPT0225870013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R1_001.fastq.gz 3327309748 FASTQ R1_L004 unaligned CPTAC3 3338a3d1-7dfb-47eb-a5f9-d95dce211972 b62fac399efece5dcebd0e2a1cfe2d27 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor' } -C3N-03448.RNA-Seq.R2_L004.T C3N-03448 GBM RNA-Seq tumor CPT0225870013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ R2_L004 unaligned CPTAC3 1ed68c0c-2d05-45a3-8479-5b09081e06b3 94ff1c499b7dc256f52514e33feb9ae1 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor' } -C3N-03448.RNA-Seq.transcriptome.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 00fbcb5c-f942-4ccd-9fd4-462356517cd6.rna_seq.transcriptome.gdc_realn.bam 7468350482 BAM transcriptome harmonized CPTAC3 f3e717af-1841-4c69-8100-f44b46cca3aa b925928b3b3d69b07c3ac610227d54f6 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor' } +C3N-03448.RNA-Seq.chimeric.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 2b9cea64-a54a-42c9-82c2-be1cc4d319cb.rna_seq.chimeric.gdc_realn.bam 38113010 BAM chimeric harmonized CPTAC3 9969c214-7d4c-4c69-b007-0b5ee9487b64 f2c0a23bcb115933f45e770e197597d7 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor' } +C3N-03448.RNA-Seq.genomic.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 2b9cea64-a54a-42c9-82c2-be1cc4d319cb.rna_seq.genomic.gdc_realn.bam 7964790003 BAM genomic harmonized CPTAC3 e9cef254-fb6d-4f96-b126-3e948521ae22 9c4b4191944aaeed83d28d67b140ed52 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor' } +C3N-03448.RNA-Seq.R1_L004.T C3N-03448 GBM RNA-Seq tumor CPT0225870013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R1_001.fastq.gz 3327309748 FASTQ R1_L004 unaligned CPTAC3 3338a3d1-7dfb-47eb-a5f9-d95dce211972 b62fac399efece5dcebd0e2a1cfe2d27 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03448.RNA-Seq.R2_L004.T C3N-03448 GBM RNA-Seq tumor CPT0225870013 200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ R2_L004 unaligned CPTAC3 1ed68c0c-2d05-45a3-8479-5b09081e06b3 94ff1c499b7dc256f52514e33feb9ae1 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03448.RNA-Seq.transcriptome.T.hg38 C3N-03448 GBM RNA-Seq tumor CPT0225870013 2b9cea64-a54a-42c9-82c2-be1cc4d319cb.rna_seq.transcriptome.gdc_realn.bam 8207362335 BAM transcriptome harmonized CPTAC3 8b245a9b-9541-4be6-8f9c-6bbbec54becf 3dd74a2ad8405d919c34fc55b40643b8 { 'aliquot_tag': 'ALQ_f84d6117', 'gdc_sample_type': 'Primary Tumor' } C3N-03448.WGS.N C3N-03448 GBM WGS blood_normal CPT0225890002 CPT0225890002.WholeGenome.RP-2158.bam 26717378576 BAM aligned CPTAC3 28bef61d-1ebb-4e66-8d27-9c253535c98c a7e086d03fa73f5efbdf2b968ffd3413 { 'aliquot_tag': 'ALQ_2961dea1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03448.WGS.N.hg38 C3N-03448 GBM WGS blood_normal CPT0225890002 cc3fdea7-e732-40b1-a3c8-76a0a704400b_wgs_gdc_realn.bam 78736410378 BAM harmonized CPTAC3 38086ca8-0290-41a9-8ed4-b7db18d6022f 7d99607de5bfbd14b3bfbf5ea1784ecb { 'aliquot_tag': 'ALQ_2961dea1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03448.WGS.T C3N-03448 GBM WGS tumor CPT0225870006 CPT0225870006.WholeGenome.RP-2158.bam 27006538735 BAM aligned CPTAC3 56676a0e-5175-45ec-ad15-48766365d3d9 a21b029924ff3bdce7f04cf947d5bf46 { 'aliquot_tag': 'ALQ_913ca4d9', 'gdc_sample_type': 'Primary Tumor' } @@ -35432,11 +37745,11 @@ C3N-03449.MethArray.Green.T C3N-03449 GBM Methylation Array tumor CPT0225900006 C3N-03449.MethArray.Red.T C3N-03449 GBM Methylation Array tumor CPT0225900006 204372030161_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 b56d60b0-d2b6-4aa5-abf5-a748290a9987 d4664862318d7784b09efab7c58b640a { 'aliquot_tag': 'ALQ_e840ab6c', 'gdc_sample_type': 'Primary Tumor' } C3N-03449.miRNA-Seq.T C3N-03449 GBM miRNA-Seq tumor CPT0225900009 200403_UNC31-K00269_0274_AHCF7GBBXY_CGTACG_S46_L002_R1_001.unaln.bam 195887899 BAM unaligned CPTAC3 ecaf2935-c115-48e2-95b7-cdb322278f82 5aa6f3e0016d098ac3acdcd40fa10b19 { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor' } C3N-03449.miRNA-Seq.T.hg38 C3N-03449 GBM miRNA-Seq tumor CPT0225900009 4cc2f843-c740-42b7-967a-6a4d834c3d1a_mirnaseq_gdc_realn.bam 212546070 BAM harmonized CPTAC3 22ac38ed-4b1e-4075-9ad1-2b3cbb456f1e c2fa16b573e496b393e44a6bdc8b6c69 { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03449.RNA-Seq.chimeric.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 434322c0-d497-4c03-831a-0e133bfc376f.rna_seq.chimeric.gdc_realn.bam 21315902 BAM chimeric harmonized CPTAC3 37b28820-e43a-4123-8d8e-1034a58acd9a 6b6bffb76bf4dceadc175ea7fbba0fc7 { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03449.RNA-Seq.genomic.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 434322c0-d497-4c03-831a-0e133bfc376f.rna_seq.genomic.gdc_realn.bam 6493713308 BAM genomic harmonized CPTAC3 be8e1c93-d8ff-4f12-88f1-c0ef46827b45 12091783d6cd40accf4a7777fa4cc58b { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03449.RNA-Seq.R1_L004.T C3N-03449 GBM RNA-Seq tumor CPT0225900009 200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R1_001.fastq.gz 2970863888 FASTQ R1_L004 unaligned CPTAC3 d8df9e03-10b6-41a3-972f-b6038ca02881 e6dc54aa448f276e4089d1ead66c8871 { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03449.RNA-Seq.R2_L004.T C3N-03449 GBM RNA-Seq tumor CPT0225900009 200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R2_001.fastq.gz 3464598047 FASTQ R2_L004 unaligned CPTAC3 289921b1-b467-487e-ad93-095bdb3834ce a20a1070426b794a2829f22d7259bf6d { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03449.RNA-Seq.transcriptome.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 434322c0-d497-4c03-831a-0e133bfc376f.rna_seq.transcriptome.gdc_realn.bam 7973254320 BAM transcriptome harmonized CPTAC3 177b1d99-bb3a-4717-9588-b69b5289516c a6b861c0653b1e4aaf4cedd4cdafc1e9 { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03449.RNA-Seq.chimeric.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 7128c285-2433-4682-9191-ae3741e0da2c.rna_seq.chimeric.gdc_realn.bam 21300651 BAM chimeric harmonized CPTAC3 73575e3c-6fb2-47ff-a820-c71a1e426705 6e7a8193ce252460b6b8d88ffac14308 { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03449.RNA-Seq.genomic.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 7128c285-2433-4682-9191-ae3741e0da2c.rna_seq.genomic.gdc_realn.bam 6494197788 BAM genomic harmonized CPTAC3 b06b2113-f39e-4a75-ad96-e95dde4398c8 5e6990e7e88f50ad78822249dfbd8570 { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03449.RNA-Seq.R1_L004.T C3N-03449 GBM RNA-Seq tumor CPT0225900009 200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R1_001.fastq.gz 2970863888 FASTQ R1_L004 unaligned CPTAC3 d8df9e03-10b6-41a3-972f-b6038ca02881 e6dc54aa448f276e4089d1ead66c8871 { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03449.RNA-Seq.R2_L004.T C3N-03449 GBM RNA-Seq tumor CPT0225900009 200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R2_001.fastq.gz 3464598047 FASTQ R2_L004 unaligned CPTAC3 289921b1-b467-487e-ad93-095bdb3834ce a20a1070426b794a2829f22d7259bf6d { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03449.RNA-Seq.transcriptome.T.hg38 C3N-03449 GBM RNA-Seq tumor CPT0225900009 7128c285-2433-4682-9191-ae3741e0da2c.rna_seq.transcriptome.gdc_realn.bam 8873967452 BAM transcriptome harmonized CPTAC3 8b9343b6-c0be-47cb-960f-c5b776fae50a ff26a2f8b3f34c9cc9f2ae3f34ea76ef { 'aliquot_tag': 'ALQ_78ffb6fd', 'gdc_sample_type': 'Primary Tumor' } C3N-03449.WGS.N C3N-03449 GBM WGS blood_normal CPT0225920002 CPT0225920002.WholeGenome.RP-2158.bam 20948538145 BAM aligned CPTAC3 de4e7d48-94d5-4d04-b1f0-54961182666b 528e6538115761445f72a8fb7f8c816d { 'aliquot_tag': 'ALQ_95ed3c15', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03449.WGS.N.hg38 C3N-03449 GBM WGS blood_normal CPT0225920002 42736975-7e8e-49ed-b85f-298eab5e784c_wgs_gdc_realn.bam 63629727764 BAM harmonized CPTAC3 12254d50-a4ec-4853-9b55-6e923e7ad99a 291df2c963457d4e6eaed5edd2cd1712 { 'aliquot_tag': 'ALQ_95ed3c15', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03449.WGS.T C3N-03449 GBM WGS tumor CPT0225900006 CPT0225900006.WholeGenome.RP-2158.bam 27759977402 BAM aligned CPTAC3 dee71466-6729-4791-8938-13ae43573976 852ee2c6f47a4683394a11a52dac8e87 { 'aliquot_tag': 'ALQ_e840ab6c', 'gdc_sample_type': 'Primary Tumor' } @@ -35448,26 +37761,36 @@ C3N-03449.WXS.T.hg38 C3N-03449 GBM WXS tumor CPT0225900006 95344601-8d6d-4b58-b2 C3N-03450.MethArray.Green.A C3N-03450 GBM Methylation Array tissue_normal CPT0405020008 205555390176_R06C01_Grn.idat 13677955 IDAT Green NA CPTAC3 02525a6c-2a58-4f70-8f60-85830a087f06 a98e2a1afb45d65b0583efe2db565eb9 { 'aliquot_tag': 'ALQ_6308fa34', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03450.MethArray.Red.A C3N-03450 GBM Methylation Array tissue_normal CPT0405020008 205555390176_R06C01_Red.idat 13677955 IDAT Red NA CPTAC3 5c22a10c-66de-4495-869b-009f24631542 fb62472ac967fe7df6c574ef1ff34c6a { 'aliquot_tag': 'ALQ_6308fa34', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03450.miRNA-Seq.A C3N-03450 GBM miRNA-Seq tissue_normal CPT0405020011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCCCGA_S38_L005_R1_001.unaln.bam 256334598 BAM unaligned CPTAC3 d2b8b521-7e0c-42d6-a8e2-c43bdd7d1c56 69691bed2249a38919ca3a963cfebd41 { 'aliquot_tag': 'ALQ_3cf73d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03450.RNA-Seq.R1_L004.A C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ R1_L004 unaligned CPTAC3 81a63cde-b0d0-40d8-bd21-4ac99c45f504 2d11f9f036bddf4e4561edcc4a4ece93 { 'aliquot_tag': 'ALQ_3cf73d1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03450.RNA-Seq.R2_L004.A C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R2_001.fastq.gz 4014228979 FASTQ R2_L004 unaligned CPTAC3 d26762d9-9ed0-4411-85a1-8a6ecfa904a0 99f90c343e5a58fbfdffe3b13f207ab5 { 'aliquot_tag': 'ALQ_3cf73d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03450.miRNA-Seq.A.hg38 C3N-03450 GBM miRNA-Seq tissue_normal CPT0405020011 862a48ba-3668-49f2-b179-334cb7943742_mirnaseq_gdc_realn.bam 274951978 BAM harmonized CPTAC3 9045da98-68c0-48dc-bac4-aa656956a136 2292473f0135ce568adbb89b1ceb5070 { 'aliquot_tag': 'ALQ_3cf73d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03450.RNA-Seq.chimeric.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.chimeric.gdc_realn.bam 332427868 BAM chimeric harmonized CPTAC3 bbf38c9c-8d71-4398-a707-a6dbfa8a6ce1 c922f38bbf10cf1b68703e806e81b85a { 'aliquot_tag': 'ALQ_3cf73d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03450.RNA-Seq.genomic.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.genomic.gdc_realn.bam 8170300984 BAM genomic harmonized CPTAC3 d3d499c6-ea9b-4b21-ac90-e9b702caef84 fceea54fd137ba677693c4700284051a { 'aliquot_tag': 'ALQ_3cf73d1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03450.RNA-Seq.R1_L004.A C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ R1_L004 unaligned CPTAC3 81a63cde-b0d0-40d8-bd21-4ac99c45f504 2d11f9f036bddf4e4561edcc4a4ece93 { 'aliquot_tag': 'ALQ_3cf73d1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03450.RNA-Seq.R2_L004.A C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R2_001.fastq.gz 4014228979 FASTQ R2_L004 unaligned CPTAC3 d26762d9-9ed0-4411-85a1-8a6ecfa904a0 99f90c343e5a58fbfdffe3b13f207ab5 { 'aliquot_tag': 'ALQ_3cf73d1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-03450.RNA-Seq.transcriptome.A.hg38 C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 c8398298-5e40-406e-b2c9-b8bf5b165d21.rna_seq.transcriptome.gdc_realn.bam 9261744425 BAM transcriptome harmonized CPTAC3 c13bc37a-77f0-49e1-b8a8-f17f31ca5937 9dadb23e87050705e5033e76a7ba238e { 'aliquot_tag': 'ALQ_3cf73d1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03450.WXS.A C3N-03450 GBM WXS tissue_normal CPT0405020008 CPT0405020008.WholeExome.RP-1303.bam 22154672056 BAM aligned CPTAC3 7498e01b-ef12-4dee-99a0-ab79f64e0119 1f933140b7b02d898638a8279e35d057 { 'aliquot_tag': 'ALQ_6308fa34', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03450.WXS.A.hg38 C3N-03450 GBM WXS tissue_normal CPT0405020008 ef8782dc-a720-4655-beda-b3b3e47c0772_wxs_gdc_realn.bam 30755140808 BAM harmonized CPTAC3 fddeeebd-f11f-4532-bc45-1a948cac1499 c68e939a32e7f1df5150323f7a69be7c { 'aliquot_tag': 'ALQ_6308fa34', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03452.MethArray.Green.T C3N-03452 GBM Methylation Array tumor CPT0225960006 204372030076_R02C01_Grn.idat 13677890 IDAT Green NA CPTAC3 bc8ab5ba-51f4-4ff2-9616-8708f899897e 3b21f01780991f8a065b8b6b2eee2574 { 'aliquot_tag': 'ALQ_67005ecc', 'gdc_sample_type': 'Primary Tumor' } C3N-03452.MethArray.Red.T C3N-03452 GBM Methylation Array tumor CPT0225960006 204372030076_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 8e4a41b8-214c-475b-b807-329b14932312 cedfee86c5e2ea8066655cbd30a67eba { 'aliquot_tag': 'ALQ_67005ecc', 'gdc_sample_type': 'Primary Tumor' } C3N-03452.miRNA-Seq.A C3N-03452 GBM miRNA-Seq tissue_normal CPT0405170011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCGAAG_S39_L005_R1_001.unaln.bam 419837604 BAM unaligned CPTAC3 1397533b-5753-41d0-b907-ae1a3166f07e 3fc014cf0f0afbd510c37c1280e20b3c { 'aliquot_tag': 'ALQ_732f04', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03452.miRNA-Seq.A.hg38 C3N-03452 GBM miRNA-Seq tissue_normal CPT0405170011 222a1db8-6a56-40a4-824d-93c65e620b7c_mirnaseq_gdc_realn.bam 463966780 BAM harmonized CPTAC3 419627a1-8834-4ca4-8d33-b16b8097cf2d efc540d033bd4ade3cb6dc03b7e38e63 { 'aliquot_tag': 'ALQ_732f04', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03452.miRNA-Seq.T C3N-03452 GBM miRNA-Seq tumor CPT0225960013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CGGAAT_S37_L008_R1_001.unaln.bam 550754421 BAM unaligned CPTAC3 414331cd-a344-4884-b014-b3a7e7a3d082 5eaabd04c5e6fad466731b1c452b2bb5 { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor' } C3N-03452.miRNA-Seq.T.hg38 C3N-03452 GBM miRNA-Seq tumor CPT0225960013 43f66e46-99a8-446a-ae78-9fdd0d0e5b4d_mirnaseq_gdc_realn.bam 608275622 BAM harmonized CPTAC3 44aafc75-b3f5-4fff-b65f-c8119d490480 ba1efe868bcb2b37710b3f8f15a54e00 { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor' } -C3N-03452.RNA-Seq.chimeric.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 47c059a7-46d4-4262-840a-0260f6fa0efc.rna_seq.chimeric.gdc_realn.bam 36374201 BAM chimeric harmonized CPTAC3 7b02ba20-0ba4-4555-a954-68fb662e553a 2a4e06e17d4a9367a14096471893453d { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor' } -C3N-03452.RNA-Seq.genomic.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 47c059a7-46d4-4262-840a-0260f6fa0efc.rna_seq.genomic.gdc_realn.bam 8861650534 BAM genomic harmonized CPTAC3 be9c22f9-1c15-46a5-be0f-4925c7e480bf b31bb665a16c42d053429e1de23b47c5 { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor' } -C3N-03452.RNA-Seq.R1_L003.A C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R1_001.fastq.gz 5208353618 FASTQ R1_L003 unaligned CPTAC3 0556e930-1904-4780-bf80-cdfba5c577b7 0d1ba4b879fe690597ca4d5dad28c105 { 'aliquot_tag': 'ALQ_732f04', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03452.RNA-Seq.R1_L004.T C3N-03452 GBM RNA-Seq tumor CPT0225960013 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R1_001.fastq.gz 4124764165 FASTQ R1_L004 unaligned CPTAC3 bcb5374d-d91f-4617-9a0b-33efb9238a3f e0a81f77e3650dda5d720b648bab8bf4 { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor' } -C3N-03452.RNA-Seq.R2_L003.A C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R2_001.fastq.gz 5389856687 FASTQ R2_L003 unaligned CPTAC3 c582f341-273b-490f-9e51-725a98439835 d529cf707545470193394c0d11e8b02d { 'aliquot_tag': 'ALQ_732f04', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03452.RNA-Seq.R2_L004.T C3N-03452 GBM RNA-Seq tumor CPT0225960013 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R2_001.fastq.gz 4459558489 FASTQ R2_L004 unaligned CPTAC3 1b82dc44-54ea-4dcb-8e7c-5b0167c478f0 97c74b84f8570811e77ebd4bf33662bd { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor' } -C3N-03452.RNA-Seq.transcriptome.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 47c059a7-46d4-4262-840a-0260f6fa0efc.rna_seq.transcriptome.gdc_realn.bam 8506367075 BAM transcriptome harmonized CPTAC3 2df119b0-f84c-4d81-bc67-ffd656b53518 929486f4a9332b9069f7c86e258aa51f { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor' } +C3N-03452.RNA-Seq.chimeric.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.chimeric.gdc_realn.bam 565072800 BAM chimeric harmonized CPTAC3 7dd13965-d725-479e-a677-2d23d62a4bea 5a3b315a09e3612652103932c33df224 { 'aliquot_tag': 'ALQ_732f04', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03452.RNA-Seq.chimeric.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 05f392ef-b100-4565-8009-d41e03f1223f.rna_seq.chimeric.gdc_realn.bam 36351452 BAM chimeric harmonized CPTAC3 bbc78eb7-e149-4bc6-9119-26ad006bb79e 121dc7fe3b4fd5a6ac8e64ba9b9205dc { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor' } +C3N-03452.RNA-Seq.genomic.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.genomic.gdc_realn.bam 10990858822 BAM genomic harmonized CPTAC3 110b1509-b14a-4783-abd1-c8da615a301b 05dd02a168c1c76e8fa7aa49c2a2dd6c { 'aliquot_tag': 'ALQ_732f04', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03452.RNA-Seq.genomic.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 05f392ef-b100-4565-8009-d41e03f1223f.rna_seq.genomic.gdc_realn.bam 8863092903 BAM genomic harmonized CPTAC3 7e7c1a8b-1673-4d45-aa5a-3f456c9f2eec 906074ed05d89e531e3fb44b26c0b710 { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor' } +C3N-03452.RNA-Seq.R1_L003.A C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R1_001.fastq.gz 5208353618 FASTQ R1_L003 unaligned CPTAC3 0556e930-1904-4780-bf80-cdfba5c577b7 0d1ba4b879fe690597ca4d5dad28c105 { 'aliquot_tag': 'ALQ_732f04', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03452.RNA-Seq.R1_L004.T C3N-03452 GBM RNA-Seq tumor CPT0225960013 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R1_001.fastq.gz 4124764165 FASTQ R1_L004 unaligned CPTAC3 bcb5374d-d91f-4617-9a0b-33efb9238a3f e0a81f77e3650dda5d720b648bab8bf4 { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03452.RNA-Seq.R2_L003.A C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 210708_UNC32-K00270_0290_BHLLHHBBXY_AGGTTATA-CAGTTCCG_S9_L003_R2_001.fastq.gz 5389856687 FASTQ R2_L003 unaligned CPTAC3 c582f341-273b-490f-9e51-725a98439835 d529cf707545470193394c0d11e8b02d { 'aliquot_tag': 'ALQ_732f04', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03452.RNA-Seq.R2_L004.T C3N-03452 GBM RNA-Seq tumor CPT0225960013 200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R2_001.fastq.gz 4459558489 FASTQ R2_L004 unaligned CPTAC3 1b82dc44-54ea-4dcb-8e7c-5b0167c478f0 97c74b84f8570811e77ebd4bf33662bd { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03452.RNA-Seq.transcriptome.A.hg38 C3N-03452 GBM RNA-Seq tissue_normal CPT0405170011 5cea239b-1e6b-4c38-9c0a-f8166cd3924c.rna_seq.transcriptome.gdc_realn.bam 12657134542 BAM transcriptome harmonized CPTAC3 b7eeccde-2059-47ca-a581-8046e7f2bf24 cdcf785fcab621107ddf9f14adff4ad0 { 'aliquot_tag': 'ALQ_732f04', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03452.RNA-Seq.transcriptome.T.hg38 C3N-03452 GBM RNA-Seq tumor CPT0225960013 05f392ef-b100-4565-8009-d41e03f1223f.rna_seq.transcriptome.gdc_realn.bam 9890880373 BAM transcriptome harmonized CPTAC3 76a0988d-9708-4c9e-bea2-f33194659a35 1d14989f417ee008299933c051c9c846 { 'aliquot_tag': 'ALQ_e719b02', 'gdc_sample_type': 'Primary Tumor' } C3N-03452.WGS.N C3N-03452 GBM WGS blood_normal CPT0225980002 CPT0225980002.WholeGenome.RP-2158.bam 22971225120 BAM aligned CPTAC3 68708734-7e8f-4ab9-88bb-310161053f46 fce54004bf972fdcd867e312b954dd2e { 'aliquot_tag': 'ALQ_df5d24b4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03452.WGS.N.hg38 C3N-03452 GBM WGS blood_normal CPT0225980002 3d82230b-c081-4c11-9e1f-aed013981520_wgs_gdc_realn.bam 68800975416 BAM harmonized CPTAC3 cd7df227-d920-4949-8ab7-191412252216 4f4f27e2b036896d32d61b21a4ece33c { 'aliquot_tag': 'ALQ_df5d24b4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03452.WGS.T C3N-03452 GBM WGS tumor CPT0225960006 CPT0225960006.WholeGenome.RP-2158.bam 28423091199 BAM aligned CPTAC3 1c720dd8-6b46-4f2f-a8a2-603d62919edf 07408cbcfd520563687e50048c7991f2 { 'aliquot_tag': 'ALQ_67005ecc', 'gdc_sample_type': 'Primary Tumor' } C3N-03452.WGS.T.hg38 C3N-03452 GBM WGS tumor CPT0225960006 c2109dc6-60b3-4bbe-b997-c781791a92c2_wgs_gdc_realn.bam 80891834156 BAM harmonized CPTAC3 285e6dc0-38fe-4ca5-a01c-d4ea82565353 eebaa2495a49ff880a2d89e04eea7897 { 'aliquot_tag': 'ALQ_67005ecc', 'gdc_sample_type': 'Primary Tumor' } C3N-03452.WXS.A C3N-03452 GBM WXS tissue_normal CPT0405170007 CPT0405170007.WholeExome.RP-1303.bam 29785107966 BAM aligned CPTAC3 85461ad1-223c-4001-b20f-2e1046f69e0c 9c6c1bf56facbbabf0d0af77c9df65d9 { 'aliquot_tag': 'ALQ_f00bbb70', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03452.WXS.A.hg38 C3N-03452 GBM WXS tissue_normal CPT0405170007 c8b69625-dc76-479e-a092-44803759e648_wxs_gdc_realn.bam 40848147125 BAM harmonized CPTAC3 852d9345-0a27-41a1-b83a-e25e2bf16e18 dece18a32b98d2aca8e69f85775c7f67 { 'aliquot_tag': 'ALQ_f00bbb70', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03452.WXS.N C3N-03452 GBM WXS blood_normal CPT0225980002 CPT0225980002.WholeExome.RP-1303.bam 22176413678 BAM aligned CPTAC3 58d9dc12-c34c-4698-b5f3-c3f0feb17aaf a550ab37b09fd9a08c96fc532b0a9076 { 'aliquot_tag': 'ALQ_df5d24b4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03452.WXS.N.hg38 C3N-03452 GBM WXS blood_normal CPT0225980002 3d82230b-c081-4c11-9e1f-aed013981520_wxs_gdc_realn.bam 29962435389 BAM harmonized CPTAC3 72713898-819e-4775-b6e7-8e81a8d14e9e eb94edc5469aa92a993f70a7b0d785c2 { 'aliquot_tag': 'ALQ_df5d24b4', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03452.WXS.T C3N-03452 GBM WXS tumor CPT0225960006 CPT0225960006.WholeExome.RP-1303.bam 22236745714 BAM aligned CPTAC3 24342f75-a181-44f5-8cbc-d85dd5e52dd7 0dff0b2e53bb774a6483acd19ef4c87e { 'aliquot_tag': 'ALQ_67005ecc', 'gdc_sample_type': 'Primary Tumor' } @@ -35476,11 +37799,11 @@ C3N-03453.MethArray.Green.T C3N-03453 GBM Methylation Array tumor CPT0225990006 C3N-03453.MethArray.Red.T C3N-03453 GBM Methylation Array tumor CPT0225990006 204372030074_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 efbbbef3-a8fd-412f-9c08-0c0fd72ea9b5 8db90441f98f19fff5bef6c25fb29ee1 { 'aliquot_tag': 'ALQ_e550c91d', 'gdc_sample_type': 'Primary Tumor' } C3N-03453.miRNA-Seq.T C3N-03453 GBM miRNA-Seq tumor CPT0225990009 200403_UNC31-K00269_0274_AHCF7GBBXY_GAGTGG_S47_L002_R1_001.unaln.bam 223237672 BAM unaligned CPTAC3 6217d0df-86ef-4370-83b8-14a0cbb79c93 e021dda425a7f1253dfd46b062384f68 { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor' } C3N-03453.miRNA-Seq.T.hg38 C3N-03453 GBM miRNA-Seq tumor CPT0225990009 31f7f397-5252-408c-9d42-f5b47fb792a2_mirnaseq_gdc_realn.bam 251493832 BAM harmonized CPTAC3 934da61a-31c6-4721-b765-fa396d4d6fb9 d43bef71ce179990a5cb07ebb01a937a { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03453.RNA-Seq.chimeric.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 d6165227-d57d-46a6-81d2-c1c81b634c7c.rna_seq.chimeric.gdc_realn.bam 30643229 BAM chimeric harmonized CPTAC3 1bd2dd93-3659-493a-bb3b-d9c6d1b630e5 11c536a6418786c4dc69b1806da364db { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03453.RNA-Seq.genomic.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 d6165227-d57d-46a6-81d2-c1c81b634c7c.rna_seq.genomic.gdc_realn.bam 7272445834 BAM genomic harmonized CPTAC3 f0d49129-272e-4fa8-abf7-dd07f11e0c6a 83bf8db0f9d563f56a1b1f13a430254a { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03453.RNA-Seq.R1_L004.T C3N-03453 GBM RNA-Seq tumor CPT0225990009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 3276064888 FASTQ R1_L004 unaligned CPTAC3 a3a1d4f8-d8b2-4e47-be49-bfd4d235448f 079d99c882bd6b518f785c2443b2f67d { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03453.RNA-Seq.R2_L004.T C3N-03453 GBM RNA-Seq tumor CPT0225990009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 3711563895 FASTQ R2_L004 unaligned CPTAC3 d643ac36-a2be-46bd-bcf4-eac66dfe9253 4c3cc69b20daee63f04557ea5545831d { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03453.RNA-Seq.transcriptome.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 d6165227-d57d-46a6-81d2-c1c81b634c7c.rna_seq.transcriptome.gdc_realn.bam 6820845669 BAM transcriptome harmonized CPTAC3 2c238590-cfa2-45b7-b145-38cf539f87c4 215c4e931bd158a6933d50bbf6c65ab3 { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03453.RNA-Seq.chimeric.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 476eaea9-6477-420e-ba9c-b6c361f867e0.rna_seq.chimeric.gdc_realn.bam 30638775 BAM chimeric harmonized CPTAC3 907291f4-a335-4e75-82cd-806b2861c583 bdf81043a5d92b8b22c0edda9dbd3186 { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03453.RNA-Seq.genomic.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 476eaea9-6477-420e-ba9c-b6c361f867e0.rna_seq.genomic.gdc_realn.bam 7273227313 BAM genomic harmonized CPTAC3 e710115f-f3c4-413d-a74b-094c0ff42b29 d7483e96beb0ad86d99bfc145b9e6791 { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03453.RNA-Seq.R1_L004.T C3N-03453 GBM RNA-Seq tumor CPT0225990009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 3276064888 FASTQ R1_L004 unaligned CPTAC3 a3a1d4f8-d8b2-4e47-be49-bfd4d235448f 079d99c882bd6b518f785c2443b2f67d { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03453.RNA-Seq.R2_L004.T C3N-03453 GBM RNA-Seq tumor CPT0225990009 200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 3711563895 FASTQ R2_L004 unaligned CPTAC3 d643ac36-a2be-46bd-bcf4-eac66dfe9253 4c3cc69b20daee63f04557ea5545831d { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03453.RNA-Seq.transcriptome.T.hg38 C3N-03453 GBM RNA-Seq tumor CPT0225990009 476eaea9-6477-420e-ba9c-b6c361f867e0.rna_seq.transcriptome.gdc_realn.bam 7785020997 BAM transcriptome harmonized CPTAC3 5c112587-aacb-4c44-af44-44b548d602df 8ce21ac5fd3102b372e0bb8a38837ae5 { 'aliquot_tag': 'ALQ_75efd48c', 'gdc_sample_type': 'Primary Tumor' } C3N-03453.WGS.N C3N-03453 GBM WGS blood_normal CPT0226010002 CPT0226010002.WholeGenome.RP-2158.bam 22150234243 BAM aligned CPTAC3 684bad64-e371-4a9d-8370-e390a5d037fc d34c8ba3d9adb274621976f47cd2df08 { 'aliquot_tag': 'ALQ_c4aa0d90', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03453.WGS.N.hg38 C3N-03453 GBM WGS blood_normal CPT0226010002 883e62e0-05c1-4b41-9315-d32aa83e8990_wgs_gdc_realn.bam 66079008259 BAM harmonized CPTAC3 668c831a-265b-418f-8444-303ea0d612f0 ada18c68aa85826a9007bd0e69d171dc { 'aliquot_tag': 'ALQ_c4aa0d90', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03453.WGS.T C3N-03453 GBM WGS tumor CPT0225990006 CPT0225990006.WholeGenome.RP-2158.bam 21511984237 BAM aligned CPTAC3 67e71faf-078b-4b6b-881c-7411be49f4c9 eb0027bbb09bbec77ee849d56c6a43dd { 'aliquot_tag': 'ALQ_e550c91d', 'gdc_sample_type': 'Primary Tumor' } @@ -35494,12 +37817,15 @@ C3N-03456.MethArray.Red.T C3N-03456 HNSCC Methylation Array tumor CPT0246590006 C3N-03456.miRNA-Seq.T C3N-03456 HNSCC miRNA-Seq tumor CPT0246590009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGAAG_S47_L007_R1_001.unaln.bam 164485506 BAM unaligned CPTAC3 b778c9a0-444f-401f-874d-b7b0a7d19561 5a072745d88998827c4ae55cf85d6c73 { 'aliquot_tag': 'ALQ_f5aa07ed', 'gdc_sample_type': 'Primary Tumor' } C3N-03456.miRNA-Seq.T.hg38 C3N-03456 HNSCC miRNA-Seq tumor CPT0246590009 486470c4-9376-4bd6-b49a-79331c742a1d_mirnaseq_gdc_realn.bam 186279149 BAM harmonized CPTAC3 b1f3be00-2c7c-4a52-8487-48b3bfa447f1 9fd0e85bf8d337e141886e8f40607538 { 'aliquot_tag': 'ALQ_f5aa07ed', 'gdc_sample_type': 'Primary Tumor' } C3N-03456.RNA-Seq.chimeric.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 f3c0a696-de6d-424d-b684-186956bb9472.rna_seq.chimeric.gdc_realn.bam 35001821 BAM chimeric harmonized CPTAC3 66bbc23a-ff92-47d2-90ae-05ac4a3fc1a1 d0f5d8c99b7b55644fcf24d24016a025 { 'aliquot_tag': 'ALQ_f5aa07ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-03456.RNA-Seq.genomic.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 f3c0a696-de6d-424d-b684-186956bb9472.rna_seq.genomic.gdc_realn.bam 9820755619 BAM genomic harmonized CPTAC3 24cdaf26-f3a5-4b79-94a4-24e278f69faa 53decffc3a36c41b7fe64a951cf60816 { 'aliquot_tag': 'ALQ_f5aa07ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-03456.RNA-Seq.R1_L006.T C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTTCCAAT-AATTCTGC_S21_L006_R1_001.fastq.gz 4617184550 FASTQ R1_L006 unaligned CPTAC3 6085a9b1-f8e8-4e81-ba00-08c1af1349ac d132cf9292feb803e63ed9bb81a39731 { 'aliquot_tag': 'ALQ_f5aa07ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-03456.RNA-Seq.R1_.T C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 20210729_P3_D6_WB7988-Plate3_S42_R1_001.fastq.gz 6182276232 FASTQ R1_ unaligned CPTAC3 64dc83e5-eee7-4133-b485-c7f306d12a54 3b0ce3f67aa53d434e457fa3ef44e64a { 'aliquot_tag': 'ALQ_a2d09988', 'gdc_sample_type': 'Primary Tumor' } -C3N-03456.RNA-Seq.R2_L006.T C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTTCCAAT-AATTCTGC_S21_L006_R2_001.fastq.gz 5265494179 FASTQ R2_L006 unaligned CPTAC3 5c8b2f32-7a81-4d56-9858-3807d2936aeb be672979bdf42b2f83aad24d32f8ca4a { 'aliquot_tag': 'ALQ_f5aa07ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-03456.RNA-Seq.R2_.T C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 20210729_P3_D6_WB7988-Plate3_S42_R2_001.fastq.gz 6412251487 FASTQ R2_ unaligned CPTAC3 fa4b3bd0-d77d-4d69-8dd4-2e9daea25b3b 672dea212b235b94face9b63836e8a5f { 'aliquot_tag': 'ALQ_a2d09988', 'gdc_sample_type': 'Primary Tumor' } +C3N-03456.RNA-Seq.chimeric.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 a49fcd9d-3daa-4b12-83e9-d9f63c0caf16.rna_seq.chimeric.gdc_realn.bam 186625232 BAM chimeric harmonized CPTAC3 49ae5a04-96e1-4fe1-8277-b267649cbe1b e5640e56333e49beef81364bf99593c4 { 'aliquot_tag': 'ALQ_a2d09988', 'gdc_sample_type': 'Primary Tumor' } +C3N-03456.RNA-Seq.genomic.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 f3c0a696-de6d-424d-b684-186956bb9472.rna_seq.genomic.gdc_realn.bam 9820755619 BAM genomic harmonized CPTAC3 dc6ebbe0-caaf-405e-b281-13b6b909aa59 53decffc3a36c41b7fe64a951cf60816 { 'aliquot_tag': 'ALQ_f5aa07ed', 'gdc_sample_type': 'Primary Tumor' } +C3N-03456.RNA-Seq.genomic.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 a49fcd9d-3daa-4b12-83e9-d9f63c0caf16.rna_seq.genomic.gdc_realn.bam 11418276490 BAM genomic harmonized CPTAC3 6d2c0116-094e-4b83-be25-20108e59cbb6 5751b54e2c146c7c65e1c267323c117a { 'aliquot_tag': 'ALQ_a2d09988', 'gdc_sample_type': 'Primary Tumor' } +C3N-03456.RNA-Seq.R1_L006.T C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTTCCAAT-AATTCTGC_S21_L006_R1_001.fastq.gz 4617184550 FASTQ R1_L006 unaligned CPTAC3 6085a9b1-f8e8-4e81-ba00-08c1af1349ac d132cf9292feb803e63ed9bb81a39731 { 'aliquot_tag': 'ALQ_f5aa07ed', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03456.RNA-Seq.R2_L006.T C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTTCCAAT-AATTCTGC_S21_L006_R2_001.fastq.gz 5265494179 FASTQ R2_L006 unaligned CPTAC3 5c8b2f32-7a81-4d56-9858-3807d2936aeb be672979bdf42b2f83aad24d32f8ca4a { 'aliquot_tag': 'ALQ_f5aa07ed', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-03456.RNA-Seq.T C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 20210729_P3_D6_WB7988-Plate3_S42_R1_001.fastq.gz 6182276232 FASTQ unaligned CPTAC3 64dc83e5-eee7-4133-b485-c7f306d12a54 3b0ce3f67aa53d434e457fa3ef44e64a +C3N-03456.RNA-Seq.T C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 20210729_P3_D6_WB7988-Plate3_S42_R2_001.fastq.gz 6412251487 FASTQ unaligned CPTAC3 fa4b3bd0-d77d-4d69-8dd4-2e9daea25b3b 672dea212b235b94face9b63836e8a5f C3N-03456.RNA-Seq.transcriptome.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0246590009 f3c0a696-de6d-424d-b684-186956bb9472.rna_seq.transcriptome.gdc_realn.bam 12325674557 BAM transcriptome harmonized CPTAC3 c2bd6155-14b0-4b1e-b741-f31b9679eeeb 3df3a6630a4c84201fd6800f7d02e6c7 { 'aliquot_tag': 'ALQ_f5aa07ed', 'gdc_sample_type': 'Primary Tumor' } +C3N-03456.RNA-Seq.transcriptome.T.hg38 C3N-03456 HNSCC RNA-Seq tumor CPT0315340011 a49fcd9d-3daa-4b12-83e9-d9f63c0caf16.rna_seq.transcriptome.gdc_realn.bam 6282617376 BAM transcriptome harmonized CPTAC3 890b2c8f-d5e8-4b75-ad3b-8f194bc70537 85cc14ebc62474e3449a08d03188fe62 { 'aliquot_tag': 'ALQ_a2d09988', 'gdc_sample_type': 'Primary Tumor' } C3N-03456.WGS.N C3N-03456 HNSCC WGS blood_normal CPT0246610002 CPT0246610002.WholeGenome.RP-1303.bam 58166684155 BAM aligned CPTAC3 935cc056-bf48-4b8d-b2b1-a8d5ecac6f23 49cbaaf420a7e84893eea95b7fbc3436 { 'aliquot_tag': 'ALQ_d49ce70a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03456.WGS.N.hg38 C3N-03456 HNSCC WGS blood_normal CPT0246610002 055a4b03-332d-40b4-ac7e-eb2e3b16fa1d_wgs_gdc_realn.bam 85813441679 BAM harmonized CPTAC3 447c307a-c8bd-45ef-aaac-b7c10fa8b9e8 6190075a90bc067f28fab249a9d56ed9 { 'aliquot_tag': 'ALQ_d49ce70a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03456.WGS.T C3N-03456 HNSCC WGS tumor CPT0246590006 CPT0246590006.WholeGenome.RP-1303.bam 66859792967 BAM aligned CPTAC3 e960e706-54ac-4fb9-a67d-c9fc9587c0cf edfdf3eaa1a1c9813116f12aeb4f6746 { 'aliquot_tag': 'ALQ_65151a7c', 'gdc_sample_type': 'Primary Tumor' } @@ -35513,9 +37839,9 @@ C3N-03457.MethArray.Red.T C3N-03457 HNSCC Methylation Array tumor CPT0246620006 C3N-03457.miRNA-Seq.T C3N-03457 HNSCC miRNA-Seq tumor CPT0246620009 190228_UNC32-K00270_0151_AHYLY3BBXX_TCGGCA_S48_L007_R1_001.unaln.bam 227965242 BAM unaligned CPTAC3 31f2163e-fdff-4bff-bab8-4d8564b9a2c8 aab960e4f3b19bda51afbea3dd498dee { 'aliquot_tag': 'ALQ_4ee4452', 'gdc_sample_type': 'Primary Tumor' } C3N-03457.miRNA-Seq.T.hg38 C3N-03457 HNSCC miRNA-Seq tumor CPT0246620009 00aae4f8-a1e3-4267-8fc2-fa3d65da7eed_mirnaseq_gdc_realn.bam 256784656 BAM harmonized CPTAC3 0cdff7b3-a296-43a9-bf1e-1dfd8c744328 41c4bfd9c1245d31bdacbef19b8b0b75 { 'aliquot_tag': 'ALQ_4ee4452', 'gdc_sample_type': 'Primary Tumor' } C3N-03457.RNA-Seq.chimeric.T.hg38 C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 0c511ffd-edbb-4679-b57e-cd1abd96c081.rna_seq.chimeric.gdc_realn.bam 30504430 BAM chimeric harmonized CPTAC3 eb61e4f5-0799-4c58-8533-a79d2a353fa0 8fb081168cb01f1a5d83f2b5ae4a7bd7 { 'aliquot_tag': 'ALQ_4ee4452', 'gdc_sample_type': 'Primary Tumor' } -C3N-03457.RNA-Seq.genomic.T.hg38 C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 0c511ffd-edbb-4679-b57e-cd1abd96c081.rna_seq.genomic.gdc_realn.bam 8771237936 BAM genomic harmonized CPTAC3 84983a4e-5952-4578-aa2d-27feddda8bd2 7bbea65952d26a8a2b71d1d6c6b34e97 { 'aliquot_tag': 'ALQ_4ee4452', 'gdc_sample_type': 'Primary Tumor' } -C3N-03457.RNA-Seq.R1_L006.T C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACCTTGGC-GGCCTCAT_S24_L006_R1_001.fastq.gz 3748215230 FASTQ R1_L006 unaligned CPTAC3 f7af8364-202b-466a-b987-dcbc6df0dec0 0cccbc147fc0ef89287bd22b8b72d8ac { 'aliquot_tag': 'ALQ_4ee4452', 'gdc_sample_type': 'Primary Tumor' } -C3N-03457.RNA-Seq.R2_L006.T C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACCTTGGC-GGCCTCAT_S24_L006_R2_001.fastq.gz 4399821792 FASTQ R2_L006 unaligned CPTAC3 1b5893e7-fe61-4378-8ca9-12d8ef625be6 c30057e7644bdb7dcae35372f5776dd9 { 'aliquot_tag': 'ALQ_4ee4452', 'gdc_sample_type': 'Primary Tumor' } +C3N-03457.RNA-Seq.genomic.T.hg38 C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 0c511ffd-edbb-4679-b57e-cd1abd96c081.rna_seq.genomic.gdc_realn.bam 8771237936 BAM genomic harmonized CPTAC3 80059542-75d4-422e-8709-8a666cb31296 7bbea65952d26a8a2b71d1d6c6b34e97 { 'aliquot_tag': 'ALQ_4ee4452', 'gdc_sample_type': 'Primary Tumor' } +C3N-03457.RNA-Seq.R1_L006.T C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACCTTGGC-GGCCTCAT_S24_L006_R1_001.fastq.gz 3748215230 FASTQ R1_L006 unaligned CPTAC3 f7af8364-202b-466a-b987-dcbc6df0dec0 0cccbc147fc0ef89287bd22b8b72d8ac { 'aliquot_tag': 'ALQ_4ee4452', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03457.RNA-Seq.R2_L006.T C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACCTTGGC-GGCCTCAT_S24_L006_R2_001.fastq.gz 4399821792 FASTQ R2_L006 unaligned CPTAC3 1b5893e7-fe61-4378-8ca9-12d8ef625be6 c30057e7644bdb7dcae35372f5776dd9 { 'aliquot_tag': 'ALQ_4ee4452', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-03457.RNA-Seq.transcriptome.T.hg38 C3N-03457 HNSCC RNA-Seq tumor CPT0246620009 0c511ffd-edbb-4679-b57e-cd1abd96c081.rna_seq.transcriptome.gdc_realn.bam 9839170819 BAM transcriptome harmonized CPTAC3 ccc6dafb-2ae6-4b62-a5ea-f5e2335b61f7 ab55212916dc912125551999bfbaa8ed { 'aliquot_tag': 'ALQ_4ee4452', 'gdc_sample_type': 'Primary Tumor' } C3N-03457.WGS.N C3N-03457 HNSCC WGS blood_normal CPT0246660002 CPT0246660002.WholeGenome.RP-1303.bam 69172588605 BAM aligned CPTAC3 5872afd7-a53c-4b24-ba62-7603baf1a162 75967ac760604750227b28b37613556b { 'aliquot_tag': 'ALQ_66bc3b1a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03457.WGS.N.hg38 C3N-03457 HNSCC WGS blood_normal CPT0246660002 782f1f40-ac9f-4746-9394-6fbbedbbd497_wgs_gdc_realn.bam 100076827056 BAM harmonized CPTAC3 1ed44b0b-1953-4fd4-9277-ff6cefa026b6 46688d6b5a8ed4a78f23d99284155f26 { 'aliquot_tag': 'ALQ_66bc3b1a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35530,9 +37856,9 @@ C3N-03458.MethArray.Red.T C3N-03458 HNSCC Methylation Array tumor CPT0246670006 C3N-03458.miRNA-Seq.T C3N-03458 HNSCC miRNA-Seq tumor CPT0246670009 190828_UNC32-K00270_0200_BH7GVJBBXY_ATCACG_S138_L008_R1_001.unaln.bam 331841482 BAM unaligned CPTAC3 c258fa3a-534f-4227-b953-17e4c822dda0 0bc041eeec670f547572cc7e8e502812 { 'aliquot_tag': 'ALQ_cc0ecb22', 'gdc_sample_type': 'Primary Tumor' } C3N-03458.miRNA-Seq.T.hg38 C3N-03458 HNSCC miRNA-Seq tumor CPT0246670009 399432c2-1352-4506-87a4-17cf3855b284_mirnaseq_gdc_realn.bam 362078155 BAM harmonized CPTAC3 eecec5ca-bf3c-4a73-ab36-ca63704b3ad0 e479d4e3a314b2a077dda71c8624373b { 'aliquot_tag': 'ALQ_cc0ecb22', 'gdc_sample_type': 'Primary Tumor' } C3N-03458.RNA-Seq.chimeric.T.hg38 C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 f150e4c9-6f6e-4f7a-9e90-248ce34744db.rna_seq.chimeric.gdc_realn.bam 23496198 BAM chimeric harmonized CPTAC3 7a679e02-355b-403d-b418-43b6f033037a 00232c39697f2f5adf63095707a8e92c { 'aliquot_tag': 'ALQ_cc0ecb22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03458.RNA-Seq.genomic.T.hg38 C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 f150e4c9-6f6e-4f7a-9e90-248ce34744db.rna_seq.genomic.gdc_realn.bam 6970501903 BAM genomic harmonized CPTAC3 f843bdcf-6aaf-4865-be16-20a9ce9680ad 7b6b0f6f3af072999e406feb09c16b5b { 'aliquot_tag': 'ALQ_cc0ecb22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03458.RNA-Seq.R1_L008.T C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 190522_UNC31-K00269_0217_AH7F5MBBXY_GTATGTTC-AACAGGAA_S46_L008_R1_001.fastq.gz 3395284766 FASTQ R1_L008 unaligned CPTAC3 47bc105c-a6cc-4b35-bfef-3332376921aa c4c55ab0554e6bf1be0765439d966ed1 { 'aliquot_tag': 'ALQ_cc0ecb22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03458.RNA-Seq.R2_L008.T C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 190522_UNC31-K00269_0217_AH7F5MBBXY_GTATGTTC-AACAGGAA_S46_L008_R2_001.fastq.gz 3766041512 FASTQ R2_L008 unaligned CPTAC3 cd09e850-f5ef-483a-9508-981fe9bf29d4 a5bc971d52722f95bb226957775de659 { 'aliquot_tag': 'ALQ_cc0ecb22', 'gdc_sample_type': 'Primary Tumor' } +C3N-03458.RNA-Seq.genomic.T.hg38 C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 f150e4c9-6f6e-4f7a-9e90-248ce34744db.rna_seq.genomic.gdc_realn.bam 6970501903 BAM genomic harmonized CPTAC3 80bc30c7-15e5-4cdc-976f-ba4bd71d01db 7b6b0f6f3af072999e406feb09c16b5b { 'aliquot_tag': 'ALQ_cc0ecb22', 'gdc_sample_type': 'Primary Tumor' } +C3N-03458.RNA-Seq.R1_L008.T C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 190522_UNC31-K00269_0217_AH7F5MBBXY_GTATGTTC-AACAGGAA_S46_L008_R1_001.fastq.gz 3395284766 FASTQ R1_L008 unaligned CPTAC3 47bc105c-a6cc-4b35-bfef-3332376921aa c4c55ab0554e6bf1be0765439d966ed1 { 'aliquot_tag': 'ALQ_cc0ecb22', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03458.RNA-Seq.R2_L008.T C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 190522_UNC31-K00269_0217_AH7F5MBBXY_GTATGTTC-AACAGGAA_S46_L008_R2_001.fastq.gz 3766041512 FASTQ R2_L008 unaligned CPTAC3 cd09e850-f5ef-483a-9508-981fe9bf29d4 a5bc971d52722f95bb226957775de659 { 'aliquot_tag': 'ALQ_cc0ecb22', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-03458.RNA-Seq.transcriptome.T.hg38 C3N-03458 HNSCC RNA-Seq tumor CPT0246670009 f150e4c9-6f6e-4f7a-9e90-248ce34744db.rna_seq.transcriptome.gdc_realn.bam 10688708421 BAM transcriptome harmonized CPTAC3 8832b0a1-9947-4ae7-83c1-b028ead9afa9 cf133e4004d26d26622e4c7da121c3ef { 'aliquot_tag': 'ALQ_cc0ecb22', 'gdc_sample_type': 'Primary Tumor' } C3N-03458.WGS.N C3N-03458 HNSCC WGS blood_normal CPT0246710002 CPT0246710002.WholeGenome.RP-1303.bam 66045519817 BAM aligned CPTAC3 dc9950a2-7958-4ad1-9f20-afaa95c71543 374d1586876fc23f648861214b9a6c27 { 'aliquot_tag': 'ALQ_1fc034af', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03458.WGS.N.hg38 C3N-03458 HNSCC WGS blood_normal CPT0246710002 dfd8f485-55b8-4973-9abb-f79f190eddb3_wgs_gdc_realn.bam 96138335271 BAM harmonized CPTAC3 32e5ae7d-3837-4869-91fd-3b2d8fe81e47 92f90bdbd312c5716be7cc52584803ee { 'aliquot_tag': 'ALQ_1fc034af', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35547,9 +37873,9 @@ C3N-03473.MethArray.Red.T C3N-03473 GBM Methylation Array tumor CPT0207090009 20 C3N-03473.miRNA-Seq.T C3N-03473 GBM miRNA-Seq tumor CPT0207090013 190228_UNC32-K00270_0151_AHYLY3BBXX_GTAGAG_S17_L008_R1_001.unaln.bam 291905505 BAM unaligned CPTAC3 862a751e-660a-4e52-b883-a75db29c282f 6fe2e09f4ed3613360ee0aba814a0593 { 'aliquot_tag': 'ALQ_7e944b4f', 'gdc_sample_type': 'Primary Tumor' } C3N-03473.miRNA-Seq.T.hg38 C3N-03473 GBM miRNA-Seq tumor CPT0207090013 90374924-d0c7-4af0-a381-c7eae572c0f7_mirnaseq_gdc_realn.bam 328145277 BAM harmonized CPTAC3 b0b694b2-1706-4210-9a09-e24b4a8436b0 7bab682da603e55ba5132d461152ba97 { 'aliquot_tag': 'ALQ_7e944b4f', 'gdc_sample_type': 'Primary Tumor' } C3N-03473.RNA-Seq.chimeric.T.hg38 C3N-03473 GBM RNA-Seq tumor CPT0207090013 6e91f74d-38d4-4372-a625-6e1703184624.rna_seq.chimeric.gdc_realn.bam 43292689 BAM chimeric harmonized CPTAC3 81f3694c-aa79-4eda-a3c8-78583f676a39 7172089730f41ea0a96366a18e26917e { 'aliquot_tag': 'ALQ_7e944b4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03473.RNA-Seq.genomic.T.hg38 C3N-03473 GBM RNA-Seq tumor CPT0207090013 6e91f74d-38d4-4372-a625-6e1703184624.rna_seq.genomic.gdc_realn.bam 7262570903 BAM genomic harmonized CPTAC3 914695f1-e712-4621-b632-cfc8a9b0743f 0b687fe47d80cf0ad0422f59b9c4fe32 { 'aliquot_tag': 'ALQ_7e944b4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03473.RNA-Seq.R1_L005.T C3N-03473 GBM RNA-Seq tumor CPT0207090013 180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R1_001.fastq.gz 3530475490 FASTQ R1_L005 unaligned CPTAC3 4bd3819d-93da-4567-928b-f5927ac9e1d4 2790e589d9d98a1f10cbfe140ef63176 { 'aliquot_tag': 'ALQ_7e944b4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03473.RNA-Seq.R2_L005.T C3N-03473 GBM RNA-Seq tumor CPT0207090013 180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R2_001.fastq.gz 3668610618 FASTQ R2_L005 unaligned CPTAC3 47023c29-a0d9-44e4-9ee0-c508be560e14 2d01c9b451d54c8e1bab206b7cbec5f2 { 'aliquot_tag': 'ALQ_7e944b4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03473.RNA-Seq.genomic.T.hg38 C3N-03473 GBM RNA-Seq tumor CPT0207090013 6e91f74d-38d4-4372-a625-6e1703184624.rna_seq.genomic.gdc_realn.bam 7262570903 BAM genomic harmonized CPTAC3 b22810fd-6f7a-4fd6-a053-48c78f5ed8d5 0b687fe47d80cf0ad0422f59b9c4fe32 { 'aliquot_tag': 'ALQ_7e944b4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03473.RNA-Seq.R1_L005.T C3N-03473 GBM RNA-Seq tumor CPT0207090013 180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R1_001.fastq.gz 3530475490 FASTQ R1_L005 unaligned CPTAC3 4bd3819d-93da-4567-928b-f5927ac9e1d4 2790e589d9d98a1f10cbfe140ef63176 { 'aliquot_tag': 'ALQ_7e944b4f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03473.RNA-Seq.R2_L005.T C3N-03473 GBM RNA-Seq tumor CPT0207090013 180918_UNC31-K00269_0152_AHWNJTBBXX_ACTTGA_S4_L005_R2_001.fastq.gz 3668610618 FASTQ R2_L005 unaligned CPTAC3 47023c29-a0d9-44e4-9ee0-c508be560e14 2d01c9b451d54c8e1bab206b7cbec5f2 { 'aliquot_tag': 'ALQ_7e944b4f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-03473.RNA-Seq.transcriptome.T.hg38 C3N-03473 GBM RNA-Seq tumor CPT0207090013 6e91f74d-38d4-4372-a625-6e1703184624.rna_seq.transcriptome.gdc_realn.bam 8840394260 BAM transcriptome harmonized CPTAC3 c3abbcaf-c4a8-4883-9d3c-b5e7818152ea 41cc6d39e043f020288b63e1448567f7 { 'aliquot_tag': 'ALQ_7e944b4f', 'gdc_sample_type': 'Primary Tumor' } C3N-03473.WGS.N C3N-03473 GBM WGS blood_normal CPT0207150002 CPT0207150002.WholeGenome.RP-1303.bam 89608667206 BAM aligned CPTAC3 1e0af5ee-49ae-4f50-ba39-2746bd64d86c 6a46748f7eb8b576c087890ca53a7042 { 'aliquot_tag': 'ALQ_1e24743c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03473.WGS.N.hg38 C3N-03473 GBM WGS blood_normal CPT0207150002 badc8643-2e9d-453d-aaaf-2b0d5e7c602d_wgs_gdc_realn.bam 135635714293 BAM harmonized CPTAC3 b7bfcf0c-933e-4354-baba-4ef357a7a93e 7aa7b18d1a622ae74df95397c552cf5a { 'aliquot_tag': 'ALQ_1e24743c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35563,11 +37889,11 @@ C3N-03480.MethArray.Green.T C3N-03480 GBM Methylation Array tumor CPT0285090006 C3N-03480.MethArray.Red.T C3N-03480 GBM Methylation Array tumor CPT0285090006 204367470127_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 2bf886bd-d727-4cc4-aba6-d4389067e5b7 44517774a99c20c55c7932a4a0a98b74 { 'aliquot_tag': 'ALQ_539f841d', 'gdc_sample_type': 'Primary Tumor' } C3N-03480.miRNA-Seq.T C3N-03480 GBM miRNA-Seq tumor CPT0285090009 200403_UNC31-K00269_0274_AHCF7GBBXY_CACTCA_S8_L001_R1_001.unaln.bam 218234486 BAM unaligned CPTAC3 6d08ac4e-9ef8-42f5-bd4b-e1ff48f71064 f4566f1a0a0c9299df660ae347f52059 { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor' } C3N-03480.miRNA-Seq.T.hg38 C3N-03480 GBM miRNA-Seq tumor CPT0285090009 0ac9c4aa-8860-43ac-987e-ea5c74700679_mirnaseq_gdc_realn.bam 241747354 BAM harmonized CPTAC3 acf6192c-1d46-4746-a7fb-06f192c055ad b5a25a91ad10ad8b4dd31135171ecaa1 { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03480.RNA-Seq.chimeric.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 a228c839-3f3f-4e57-9082-818d81fa8ff0.rna_seq.chimeric.gdc_realn.bam 21623773 BAM chimeric harmonized CPTAC3 13c3b558-5d61-4866-9854-51b72241e626 d9acdc05c9b1c81dcbf6aef48b39fd4f { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03480.RNA-Seq.genomic.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 a228c839-3f3f-4e57-9082-818d81fa8ff0.rna_seq.genomic.gdc_realn.bam 5714497173 BAM genomic harmonized CPTAC3 28255bde-fa86-4529-9edb-66439d7753e3 1a3d0cc30ea90a6352303d792e987606 { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03480.RNA-Seq.R1_L006.T C3N-03480 GBM RNA-Seq tumor CPT0285090009 200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R1_001.fastq.gz 2521737632 FASTQ R1_L006 unaligned CPTAC3 f76e24bf-2452-4f99-8d37-8cbe2327cfbc 932e71315f55429ab7f6664487fe1235 { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03480.RNA-Seq.R2_L006.T C3N-03480 GBM RNA-Seq tumor CPT0285090009 200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R2_001.fastq.gz 2906005713 FASTQ R2_L006 unaligned CPTAC3 4dc1a8c2-6c07-43e4-9901-b5885da43e33 8462769cb3622ada2925b32052e4721e { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03480.RNA-Seq.transcriptome.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 a228c839-3f3f-4e57-9082-818d81fa8ff0.rna_seq.transcriptome.gdc_realn.bam 5518702289 BAM transcriptome harmonized CPTAC3 da9dd9d3-57e6-473c-8bab-466ec6d8c839 7ef1f153566a2fc7d81e8fa330491403 { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03480.RNA-Seq.chimeric.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 5e1f5493-31aa-467b-b783-9da91bee8ed5.rna_seq.chimeric.gdc_realn.bam 21609922 BAM chimeric harmonized CPTAC3 4ae5049f-0d45-487f-8e12-44d6d02a25a6 4bb5ff48f00de97c205002bb2ca03a70 { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03480.RNA-Seq.genomic.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 5e1f5493-31aa-467b-b783-9da91bee8ed5.rna_seq.genomic.gdc_realn.bam 5715243811 BAM genomic harmonized CPTAC3 30378aa4-b360-4fc5-baeb-c4b5f43ec26c 8bbbea4ca4794ed90708e8285d6c3e70 { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03480.RNA-Seq.R1_L006.T C3N-03480 GBM RNA-Seq tumor CPT0285090009 200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R1_001.fastq.gz 2521737632 FASTQ R1_L006 unaligned CPTAC3 f76e24bf-2452-4f99-8d37-8cbe2327cfbc 932e71315f55429ab7f6664487fe1235 { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03480.RNA-Seq.R2_L006.T C3N-03480 GBM RNA-Seq tumor CPT0285090009 200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R2_001.fastq.gz 2906005713 FASTQ R2_L006 unaligned CPTAC3 4dc1a8c2-6c07-43e4-9901-b5885da43e33 8462769cb3622ada2925b32052e4721e { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-03480.RNA-Seq.transcriptome.T.hg38 C3N-03480 GBM RNA-Seq tumor CPT0285090009 5e1f5493-31aa-467b-b783-9da91bee8ed5.rna_seq.transcriptome.gdc_realn.bam 6301692350 BAM transcriptome harmonized CPTAC3 0b45a1f3-f1e2-4afd-950e-f0335bbc54d1 3d781d3435abe8547b292a87774db899 { 'aliquot_tag': 'ALQ_c320998c', 'gdc_sample_type': 'Primary Tumor' } C3N-03480.WGS.N C3N-03480 GBM WGS blood_normal CPT0285120002 CPT0285120002.WholeGenome.RP-2158.bam 22643381148 BAM aligned CPTAC3 106b7fd7-a720-49cb-9c8a-4bc96ff0ff72 dd734b7f0fbf58402388634782c5341b { 'aliquot_tag': 'ALQ_e87ea2b0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03480.WGS.N.hg38 C3N-03480 GBM WGS blood_normal CPT0285120002 8546651a-1f37-4289-8c55-d588c65768e2_wgs_gdc_realn.bam 69550902854 BAM harmonized CPTAC3 2e9debd8-9891-4238-bea9-3329317f7f86 3a72aae9d4bd8657aee2a1704a43d4d1 { 'aliquot_tag': 'ALQ_e87ea2b0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03480.WGS.T C3N-03480 GBM WGS tumor CPT0285090006 CPT0285090006.WholeGenome.RP-2158.bam 23801172742 BAM aligned CPTAC3 b08961ab-c5d2-4a32-8072-78e42d543d91 5d1096c6409612d8b6f437883c77d847 { 'aliquot_tag': 'ALQ_539f841d', 'gdc_sample_type': 'Primary Tumor' } @@ -35580,11 +37906,11 @@ C3N-03484.MethArray.Green.T C3N-03484 GBM Methylation Array tumor CPT0285140006 C3N-03484.MethArray.Red.T C3N-03484 GBM Methylation Array tumor CPT0285140006 204367490082_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 b26e4c8c-e830-4c8a-a64a-fb25a223e253 94f01aa74732ae3cc37935509d154d7e { 'aliquot_tag': 'ALQ_60539309', 'gdc_sample_type': 'Primary Tumor' } C3N-03484.miRNA-Seq.T C3N-03484 GBM miRNA-Seq tumor CPT0285140009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAGGCG_S9_L001_R1_001.unaln.bam 182189713 BAM unaligned CPTAC3 c2af4430-bc61-4c52-9467-3594592c364c 23683843adb24c2a85f7f30777c68cac { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor' } C3N-03484.miRNA-Seq.T.hg38 C3N-03484 GBM miRNA-Seq tumor CPT0285140009 386b1cd0-36e9-4c81-994f-1bf017803701_mirnaseq_gdc_realn.bam 208439388 BAM harmonized CPTAC3 bccef22b-a159-45a2-ab4f-e61e30f1938f 88383fb95ae40dc1c06614bd9480255e { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor' } -C3N-03484.RNA-Seq.chimeric.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 0c6a7c2c-d793-4320-ac99-59dd56c48027.rna_seq.chimeric.gdc_realn.bam 24777042 BAM chimeric harmonized CPTAC3 ce5c70ab-3ca3-4d74-9256-4c8cefac20c4 bfa112266f42031e8a91368b11c257d8 { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor' } -C3N-03484.RNA-Seq.genomic.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 0c6a7c2c-d793-4320-ac99-59dd56c48027.rna_seq.genomic.gdc_realn.bam 6547337417 BAM genomic harmonized CPTAC3 b20641d2-793d-4233-b3fb-843015c93997 b74e0a9e97d9a5238339472bace37bc2 { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor' } -C3N-03484.RNA-Seq.R1_L007.T C3N-03484 GBM RNA-Seq tumor CPT0285140009 200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R1_001.fastq.gz 2974015739 FASTQ R1_L007 unaligned CPTAC3 43c7c7da-6399-4ecb-b5e9-7bd1481fd3af 642c44b9a5e2ebc892d941de95d8fdee { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor' } -C3N-03484.RNA-Seq.R2_L007.T C3N-03484 GBM RNA-Seq tumor CPT0285140009 200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R2_001.fastq.gz 3472658451 FASTQ R2_L007 unaligned CPTAC3 f10504f3-e9a4-4e87-9cda-7b7d225d0b17 85cab8bec0009082ed2f99c046fbbbe3 { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor' } -C3N-03484.RNA-Seq.transcriptome.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 0c6a7c2c-d793-4320-ac99-59dd56c48027.rna_seq.transcriptome.gdc_realn.bam 6282801605 BAM transcriptome harmonized CPTAC3 65ded1dd-7d92-4bc7-8c5d-ac855c485ad0 c084d6b52daef9c1b3b4df65e21fad26 { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor' } +C3N-03484.RNA-Seq.chimeric.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 86fcf407-28f7-481d-bc6d-760736228a70.rna_seq.chimeric.gdc_realn.bam 24773061 BAM chimeric harmonized CPTAC3 4288fbe7-9490-4fd2-bbbc-be756229e19a 1fac73c45df6c4fa062eaf3dbfd55842 { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor' } +C3N-03484.RNA-Seq.genomic.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 86fcf407-28f7-481d-bc6d-760736228a70.rna_seq.genomic.gdc_realn.bam 6548116675 BAM genomic harmonized CPTAC3 49d8de3a-7a23-4aa1-9053-7bccc30249e8 b3fea09631fce9e12b2bb5e3ab638949 { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor' } +C3N-03484.RNA-Seq.R1_L007.T C3N-03484 GBM RNA-Seq tumor CPT0285140009 200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R1_001.fastq.gz 2974015739 FASTQ R1_L007 unaligned CPTAC3 43c7c7da-6399-4ecb-b5e9-7bd1481fd3af 642c44b9a5e2ebc892d941de95d8fdee { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03484.RNA-Seq.R2_L007.T C3N-03484 GBM RNA-Seq tumor CPT0285140009 200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R2_001.fastq.gz 3472658451 FASTQ R2_L007 unaligned CPTAC3 f10504f3-e9a4-4e87-9cda-7b7d225d0b17 85cab8bec0009082ed2f99c046fbbbe3 { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03484.RNA-Seq.transcriptome.T.hg38 C3N-03484 GBM RNA-Seq tumor CPT0285140009 86fcf407-28f7-481d-bc6d-760736228a70.rna_seq.transcriptome.gdc_realn.bam 7265273801 BAM transcriptome harmonized CPTAC3 a22b57ff-b701-444c-b733-56b6ad544820 9d2bfccff5237cb702d13e29dcda7d7a { 'aliquot_tag': 'ALQ_f0ec8e98', 'gdc_sample_type': 'Primary Tumor' } C3N-03484.WGS.N C3N-03484 GBM WGS blood_normal CPT0285150002 CPT0285150002.WholeGenome.RP-2158.bam 29465818741 BAM aligned CPTAC3 1123e65d-b1d8-4090-9660-a5b192325c5d 9aa4f6135fe7b71553ee013bb2d0b8cb { 'aliquot_tag': 'ALQ_5a5e7ea0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03484.WGS.N.hg38 C3N-03484 GBM WGS blood_normal CPT0285150002 258921c4-2923-423e-baae-2d7c9530872c_wgs_gdc_realn.bam 87200070473 BAM harmonized CPTAC3 9b795115-1bc6-4f21-96c6-53a3249ce701 ffa87c7023b32f9163508f6c96a1a623 { 'aliquot_tag': 'ALQ_5a5e7ea0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03484.WGS.T C3N-03484 GBM WGS tumor CPT0285140006 CPT0285140006.WholeGenome.RP-2158.bam 20856065528 BAM aligned CPTAC3 d4e3ab41-533f-487c-b10e-ee7bc793d949 e40cd7d46a37881d1c44ff4401b025d3 { 'aliquot_tag': 'ALQ_60539309', 'gdc_sample_type': 'Primary Tumor' } @@ -35601,12 +37927,12 @@ C3N-03486.miRNA-Seq.T C3N-03486 LSCC miRNA-Seq tumor CPT0195510006 181219_UNC31- C3N-03486.miRNA-Seq.T.hg38 C3N-03486 LSCC miRNA-Seq tumor CPT0195510006 1145714d-53f2-46cd-b6c4-0cce6036d200_mirnaseq_gdc_realn.bam 198472726 BAM harmonized CPTAC3 d71a0057-33ec-477e-8836-e7e6b184abc3 6856f2ebebe612c0ca78a96ac973cadf { 'aliquot_tag': 'ALQ_c6056234', 'gdc_sample_type': 'Primary Tumor' } C3N-03486.RNA-Seq.chimeric.A.hg38 C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 a6d4e0d6-3c76-4ee3-a68e-a9ad6ae425aa.rna_seq.chimeric.gdc_realn.bam 143317166 BAM chimeric harmonized CPTAC3 7672ee0d-61b0-4c99-964c-2ceaa32d2791 ee3726254fc18994c49b4817dc633c57 { 'aliquot_tag': 'ALQ_81a518e4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03486.RNA-Seq.chimeric.T.hg38 C3N-03486 LSCC RNA-Seq tumor CPT0195510006 25a66f0f-dbb0-4c43-98b9-a05dc3899a15.rna_seq.chimeric.gdc_realn.bam 115609723 BAM chimeric harmonized CPTAC3 e61fd2c4-6349-4ce0-befc-ad1d45f02e14 16280c4c7eee4c1fb636e44871ca68a4 { 'aliquot_tag': 'ALQ_c6056234', 'gdc_sample_type': 'Primary Tumor' } -C3N-03486.RNA-Seq.genomic.A.hg38 C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 a6d4e0d6-3c76-4ee3-a68e-a9ad6ae425aa.rna_seq.genomic.gdc_realn.bam 6622354629 BAM genomic harmonized CPTAC3 ee0fcf0a-f910-4c5d-902e-00732b866043 0f56910fb8cd7e1c2a8ffa0292351b00 { 'aliquot_tag': 'ALQ_81a518e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03486.RNA-Seq.genomic.T.hg38 C3N-03486 LSCC RNA-Seq tumor CPT0195510006 25a66f0f-dbb0-4c43-98b9-a05dc3899a15.rna_seq.genomic.gdc_realn.bam 9685969267 BAM genomic harmonized CPTAC3 76b94daf-1187-4522-8f03-a6d52bf1fbf0 09a16c09cd4f092559cc0b591ff939e4 { 'aliquot_tag': 'ALQ_c6056234', 'gdc_sample_type': 'Primary Tumor' } -C3N-03486.RNA-Seq.R1_L005.A C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 2878895786 FASTQ R1_L005 unaligned CPTAC3 e344fc2b-0a01-4b88-9d6e-3030b6535de0 8e4159303df7c57b77f5df49e9b714f9 { 'aliquot_tag': 'ALQ_81a518e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03486.RNA-Seq.R1_L006.T C3N-03486 LSCC RNA-Seq tumor CPT0195510006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTCCGC_S29_L006_R1_001.fastq.gz 4475166605 FASTQ R1_L006 unaligned CPTAC3 46b4e742-4b02-485c-a4c6-746de574c222 35f4dfe9a63c7e1787d1f1fd1ef1e76b { 'aliquot_tag': 'ALQ_c6056234', 'gdc_sample_type': 'Primary Tumor' } -C3N-03486.RNA-Seq.R2_L005.A C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 3076716774 FASTQ R2_L005 unaligned CPTAC3 1ea088f4-3643-4395-8d81-683409b4c2bb ba0bd4a248fb37dc2c0f9f67521ef1a4 { 'aliquot_tag': 'ALQ_81a518e4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03486.RNA-Seq.R2_L006.T C3N-03486 LSCC RNA-Seq tumor CPT0195510006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTCCGC_S29_L006_R2_001.fastq.gz 4685089915 FASTQ R2_L006 unaligned CPTAC3 3686409a-862f-46d5-b5c3-51c05146f90e 57500faec2ed05daf63f9a815967af1f { 'aliquot_tag': 'ALQ_c6056234', 'gdc_sample_type': 'Primary Tumor' } +C3N-03486.RNA-Seq.genomic.A.hg38 C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 a6d4e0d6-3c76-4ee3-a68e-a9ad6ae425aa.rna_seq.genomic.gdc_realn.bam 6622354629 BAM genomic harmonized CPTAC3 1b750683-4c33-41a6-beb9-8f48f1642c10 0f56910fb8cd7e1c2a8ffa0292351b00 { 'aliquot_tag': 'ALQ_81a518e4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03486.RNA-Seq.genomic.T.hg38 C3N-03486 LSCC RNA-Seq tumor CPT0195510006 25a66f0f-dbb0-4c43-98b9-a05dc3899a15.rna_seq.genomic.gdc_realn.bam 9685969267 BAM genomic harmonized CPTAC3 e083e983-adaf-4793-a88b-f3f58624aac1 09a16c09cd4f092559cc0b591ff939e4 { 'aliquot_tag': 'ALQ_c6056234', 'gdc_sample_type': 'Primary Tumor' } +C3N-03486.RNA-Seq.R1_L005.A C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 2878895786 FASTQ R1_L005 unaligned CPTAC3 e344fc2b-0a01-4b88-9d6e-3030b6535de0 8e4159303df7c57b77f5df49e9b714f9 { 'aliquot_tag': 'ALQ_81a518e4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03486.RNA-Seq.R1_L006.T C3N-03486 LSCC RNA-Seq tumor CPT0195510006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTCCGC_S29_L006_R1_001.fastq.gz 4475166605 FASTQ R1_L006 unaligned CPTAC3 46b4e742-4b02-485c-a4c6-746de574c222 35f4dfe9a63c7e1787d1f1fd1ef1e76b { 'aliquot_tag': 'ALQ_c6056234', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03486.RNA-Seq.R2_L005.A C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 181207_UNC32-K00270_0136_AH2N7LBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 3076716774 FASTQ R2_L005 unaligned CPTAC3 1ea088f4-3643-4395-8d81-683409b4c2bb ba0bd4a248fb37dc2c0f9f67521ef1a4 { 'aliquot_tag': 'ALQ_81a518e4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03486.RNA-Seq.R2_L006.T C3N-03486 LSCC RNA-Seq tumor CPT0195510006 181002_UNC31-K00269_0156_AHWN3HBBXX_GTCCGC_S29_L006_R2_001.fastq.gz 4685089915 FASTQ R2_L006 unaligned CPTAC3 3686409a-862f-46d5-b5c3-51c05146f90e 57500faec2ed05daf63f9a815967af1f { 'aliquot_tag': 'ALQ_c6056234', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-03486.RNA-Seq.transcriptome.A.hg38 C3N-03486 LSCC RNA-Seq tissue_normal CPT0195520006 a6d4e0d6-3c76-4ee3-a68e-a9ad6ae425aa.rna_seq.transcriptome.gdc_realn.bam 7857932420 BAM transcriptome harmonized CPTAC3 86be8641-bfef-4f16-8d94-7eb59f45414f 4408e4c036c309803c6d71dbd960e179 { 'aliquot_tag': 'ALQ_81a518e4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03486.RNA-Seq.transcriptome.T.hg38 C3N-03486 LSCC RNA-Seq tumor CPT0195510006 25a66f0f-dbb0-4c43-98b9-a05dc3899a15.rna_seq.transcriptome.gdc_realn.bam 13236343331 BAM transcriptome harmonized CPTAC3 2dca1f70-643f-42fc-8eed-ab4daff26ba8 ceedd94a9754e7780d447b300016ae5a { 'aliquot_tag': 'ALQ_c6056234', 'gdc_sample_type': 'Primary Tumor' } C3N-03486.WGS.A C3N-03486 LSCC WGS tissue_normal CPT0195520009 CPT0195520009.WholeGenome.RP-1303.bam 56006825846 BAM aligned CPTAC3 5eaf1435-a050-4e40-9084-ae45ea8c4b8f d8af56fee672aed7260362304309133e { 'aliquot_tag': 'ALQ_111a0575', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -35631,16 +37957,19 @@ C3N-03487.miRNA-Seq.T C3N-03487 HNSCC miRNA-Seq tumor CPT0194960013 190228_UNC32 C3N-03487.miRNA-Seq.T.hg38 C3N-03487 HNSCC miRNA-Seq tumor CPT0194960013 454adf8d-1535-4012-a4ec-d310ad01dc0d_mirnaseq_gdc_realn.bam 267280389 BAM harmonized CPTAC3 18e04e01-72ec-4009-a6f9-8d46e550fc93 8d2468109d6de74772391de5e84d2797 { 'aliquot_tag': 'ALQ_cce1b025', 'gdc_sample_type': 'Primary Tumor' } C3N-03487.RNA-Seq.chimeric.A.hg38 C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 4b7e2f7a-9b9b-4e30-8fd3-afc4748c85ee.rna_seq.chimeric.gdc_realn.bam 251637810 BAM chimeric harmonized CPTAC3 7b37bdcb-8ae0-47e3-9cf7-15a16bde7d97 ee09c8a525457248343b8cfadd8fa8c1 { 'aliquot_tag': 'ALQ_1aa0cb8a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03487.RNA-Seq.chimeric.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 80cd7e58-d390-4e55-8036-f2c3d997a56c.rna_seq.chimeric.gdc_realn.bam 309428583 BAM chimeric harmonized CPTAC3 0fca3aff-d56d-430b-9a17-0ac5ba669e2c c9e4102b14c9a1a408d9aa49656c3243 { 'aliquot_tag': 'ALQ_cce1b025', 'gdc_sample_type': 'Primary Tumor' } +C3N-03487.RNA-Seq.chimeric.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 d053e53e-efee-4bcb-b156-bf2fd86192ea.rna_seq.chimeric.gdc_realn.bam 201906217 BAM chimeric harmonized CPTAC3 3ad3f35f-bb21-40df-949a-1c486bad9235 96c2d633589a438ed3f648a510d6ea04 { 'aliquot_tag': 'ALQ_2cd77ed5', 'gdc_sample_type': 'Primary Tumor' } C3N-03487.RNA-Seq.genomic.A.hg38 C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 4b7e2f7a-9b9b-4e30-8fd3-afc4748c85ee.rna_seq.genomic.gdc_realn.bam 7753094858 BAM genomic harmonized CPTAC3 51c57310-ab85-4f50-b0c2-fdab860d63a8 505d7a5989d2ffa82f04181beb90e8e1 { 'aliquot_tag': 'ALQ_1aa0cb8a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03487.RNA-Seq.genomic.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 80cd7e58-d390-4e55-8036-f2c3d997a56c.rna_seq.genomic.gdc_realn.bam 7030015830 BAM genomic harmonized CPTAC3 c9e73e7c-8e89-40a5-a8be-c1e558c58307 19c6377e27be54bd2c271de5f40f46d2 { 'aliquot_tag': 'ALQ_cce1b025', 'gdc_sample_type': 'Primary Tumor' } -C3N-03487.RNA-Seq.R1_L005.A C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 190328_UNC31-K00269_0204_BH5F5NBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 3595332583 FASTQ R1_L005 unaligned CPTAC3 e3db7125-d6bf-4004-84b2-6f9f495bb77d 2620041fe3b28602ffe208135ca65ed0 { 'aliquot_tag': 'ALQ_1aa0cb8a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03487.RNA-Seq.R1_L008.T C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L008_R1_001.fastq.gz 3344472700 FASTQ R1_L008 unaligned CPTAC3 5ce91bbc-6d15-4c90-b514-ed2c1f72f7b1 4e0343ce9dfa0492c699b9028e37ce6c { 'aliquot_tag': 'ALQ_cce1b025', 'gdc_sample_type': 'Primary Tumor' } -C3N-03487.RNA-Seq.R1_.T C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 20210723_P2_E4_WB7988-plate2_S52_R1_001.fastq.gz 5352292883 FASTQ R1_ unaligned CPTAC3 df1c6a5f-5c79-40c2-a2ca-ad35245dbc24 616cc763622e788dd8f16090659f6c30 { 'aliquot_tag': 'ALQ_2cd77ed5', 'gdc_sample_type': 'Primary Tumor' } -C3N-03487.RNA-Seq.R2_L005.A C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 190328_UNC31-K00269_0204_BH5F5NBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4023377319 FASTQ R2_L005 unaligned CPTAC3 1efae587-8f83-47c6-a8c5-b311163629a9 e7e35660bde87f2bfe0584235225c699 { 'aliquot_tag': 'ALQ_1aa0cb8a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03487.RNA-Seq.R2_L008.T C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L008_R2_001.fastq.gz 3899458231 FASTQ R2_L008 unaligned CPTAC3 fc15a27e-1e62-4d26-a05b-f7a0c4cc1bc5 68a29f6eac637bec502ebe302cb0d413 { 'aliquot_tag': 'ALQ_cce1b025', 'gdc_sample_type': 'Primary Tumor' } -C3N-03487.RNA-Seq.R2_.T C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 20210723_P2_E4_WB7988-plate2_S52_R2_001.fastq.gz 5511221398 FASTQ R2_ unaligned CPTAC3 9b781148-60bc-48b8-89a0-1ab8d734cba3 611640d229be33d4989e3cb3821051bf { 'aliquot_tag': 'ALQ_2cd77ed5', 'gdc_sample_type': 'Primary Tumor' } +C3N-03487.RNA-Seq.genomic.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 80cd7e58-d390-4e55-8036-f2c3d997a56c.rna_seq.genomic.gdc_realn.bam 7030015830 BAM genomic harmonized CPTAC3 e5ee9734-18b1-47d6-87b5-9f90bde4c7d4 19c6377e27be54bd2c271de5f40f46d2 { 'aliquot_tag': 'ALQ_cce1b025', 'gdc_sample_type': 'Primary Tumor' } +C3N-03487.RNA-Seq.genomic.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 d053e53e-efee-4bcb-b156-bf2fd86192ea.rna_seq.genomic.gdc_realn.bam 11140036334 BAM genomic harmonized CPTAC3 4ea8ed99-b58e-4c51-a071-df9c23ed8961 b22d8943401c06e2c88a1164e3ad1fc7 { 'aliquot_tag': 'ALQ_2cd77ed5', 'gdc_sample_type': 'Primary Tumor' } +C3N-03487.RNA-Seq.R1_L005.A C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 190328_UNC31-K00269_0204_BH5F5NBBXY_GAGTGG_S18_L005_R1_001.fastq.gz 3595332583 FASTQ R1_L005 unaligned CPTAC3 e3db7125-d6bf-4004-84b2-6f9f495bb77d 2620041fe3b28602ffe208135ca65ed0 { 'aliquot_tag': 'ALQ_1aa0cb8a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03487.RNA-Seq.R1_L008.T C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L008_R1_001.fastq.gz 3344472700 FASTQ R1_L008 unaligned CPTAC3 5ce91bbc-6d15-4c90-b514-ed2c1f72f7b1 4e0343ce9dfa0492c699b9028e37ce6c { 'aliquot_tag': 'ALQ_cce1b025', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03487.RNA-Seq.R2_L005.A C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 190328_UNC31-K00269_0204_BH5F5NBBXY_GAGTGG_S18_L005_R2_001.fastq.gz 4023377319 FASTQ R2_L005 unaligned CPTAC3 1efae587-8f83-47c6-a8c5-b311163629a9 e7e35660bde87f2bfe0584235225c699 { 'aliquot_tag': 'ALQ_1aa0cb8a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03487.RNA-Seq.R2_L008.T C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L008_R2_001.fastq.gz 3899458231 FASTQ R2_L008 unaligned CPTAC3 fc15a27e-1e62-4d26-a05b-f7a0c4cc1bc5 68a29f6eac637bec502ebe302cb0d413 { 'aliquot_tag': 'ALQ_cce1b025', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03487.RNA-Seq.T C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 20210723_P2_E4_WB7988-plate2_S52_R1_001.fastq.gz 5352292883 FASTQ unaligned CPTAC3 df1c6a5f-5c79-40c2-a2ca-ad35245dbc24 616cc763622e788dd8f16090659f6c30 +C3N-03487.RNA-Seq.T C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 20210723_P2_E4_WB7988-plate2_S52_R2_001.fastq.gz 5511221398 FASTQ unaligned CPTAC3 9b781148-60bc-48b8-89a0-1ab8d734cba3 611640d229be33d4989e3cb3821051bf C3N-03487.RNA-Seq.transcriptome.A.hg38 C3N-03487 HNSCC RNA-Seq tissue_normal CPT0194980006 4b7e2f7a-9b9b-4e30-8fd3-afc4748c85ee.rna_seq.transcriptome.gdc_realn.bam 9409315881 BAM transcriptome harmonized CPTAC3 82efa606-e1a0-456f-967f-aeff53044d91 7c37eed5c033389e4f01668f996c6a46 { 'aliquot_tag': 'ALQ_1aa0cb8a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03487.RNA-Seq.transcriptome.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0194960013 80cd7e58-d390-4e55-8036-f2c3d997a56c.rna_seq.transcriptome.gdc_realn.bam 9257322239 BAM transcriptome harmonized CPTAC3 cb43f0a4-53e5-423d-aabe-d5efb2c4917a 135adac4ba6ad753406def5e7631e3bc { 'aliquot_tag': 'ALQ_cce1b025', 'gdc_sample_type': 'Primary Tumor' } +C3N-03487.RNA-Seq.transcriptome.T.hg38 C3N-03487 HNSCC RNA-Seq tumor CPT0195000011 d053e53e-efee-4bcb-b156-bf2fd86192ea.rna_seq.transcriptome.gdc_realn.bam 5158626363 BAM transcriptome harmonized CPTAC3 c6c80a00-ed28-4681-818d-18c47c37948a 9a9af1231611a7d932756fe226cd3743 { 'aliquot_tag': 'ALQ_2cd77ed5', 'gdc_sample_type': 'Primary Tumor' } C3N-03487.WGS.N C3N-03487 HNSCC WGS blood_normal CPT0195070002 CPT0195070002.WholeGenome.RP-1303.bam 62548499532 BAM aligned CPTAC3 8dda8e2b-0df3-4677-bcfb-1a78c4e2c68c 172c3d49cc027421f2d48f62b7a39013 { 'aliquot_tag': 'ALQ_1ee5c23e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03487.WGS.N.hg38 C3N-03487 HNSCC WGS blood_normal CPT0195070002 5952f6d2-9a74-4404-9a00-1239265dc7d9_wgs_gdc_realn.bam 89691918518 BAM harmonized CPTAC3 b20d74b7-52a9-4641-96ce-2c4eb414de31 3b2cc686901e2efa888b17d200339208 { 'aliquot_tag': 'ALQ_1ee5c23e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03487.WGS.T C3N-03487 HNSCC WGS tumor CPT0194960009 CPT0194960009.WholeGenome.RP-1303.bam 60531736043 BAM aligned CPTAC3 4eeb0f2f-a006-4a88-a925-f7bf32dc4cb1 f58df91c90cde0d517aca95dcbcb74b1 { 'aliquot_tag': 'ALQ_352f687a', 'gdc_sample_type': 'Primary Tumor' } @@ -35661,16 +37990,19 @@ C3N-03488.miRNA-Seq.T C3N-03488 HNSCC miRNA-Seq tumor CPT0194250013 190228_UNC32 C3N-03488.miRNA-Seq.T.hg38 C3N-03488 HNSCC miRNA-Seq tumor CPT0194250013 0811d9fa-0627-439e-ab9b-be88ff4c14f9_mirnaseq_gdc_realn.bam 243432661 BAM harmonized CPTAC3 08ccac6a-54d4-4eac-9675-f4151adc7df5 78a3d25bc8ca93f54c8be232e9c06c78 { 'aliquot_tag': 'ALQ_e1863a36', 'gdc_sample_type': 'Primary Tumor' } C3N-03488.RNA-Seq.chimeric.A.hg38 C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 645ed983-48cb-4eea-ac3f-5da66d5b81d8.rna_seq.chimeric.gdc_realn.bam 361267019 BAM chimeric harmonized CPTAC3 3935941d-7e40-47e8-a6b8-b548b798df1d 40e0ec3c836a3c28dcc54ebaafa5cdca { 'aliquot_tag': 'ALQ_cf578528', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03488.RNA-Seq.chimeric.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 e639308c-2adb-4a18-9cf8-a3df9b0fb0d7.rna_seq.chimeric.gdc_realn.bam 340925531 BAM chimeric harmonized CPTAC3 96b78a6c-7481-48f8-9ffe-6ce06183e027 6e15da43ad0a78a61d94d18a11456bb1 { 'aliquot_tag': 'ALQ_e1863a36', 'gdc_sample_type': 'Primary Tumor' } -C3N-03488.RNA-Seq.genomic.A.hg38 C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 645ed983-48cb-4eea-ac3f-5da66d5b81d8.rna_seq.genomic.gdc_realn.bam 9258219343 BAM genomic harmonized CPTAC3 8c7d5c24-7cbb-4466-96ea-b436006afbcd 8045e3fbc0c89afd7c182190fd5bbd08 { 'aliquot_tag': 'ALQ_cf578528', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03488.RNA-Seq.genomic.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 e639308c-2adb-4a18-9cf8-a3df9b0fb0d7.rna_seq.genomic.gdc_realn.bam 8800054513 BAM genomic harmonized CPTAC3 3d793e90-2bff-4f2f-9d9b-9b126859392f b12789ad7519a0f97c6a7d6b4e1bb5a9 { 'aliquot_tag': 'ALQ_e1863a36', 'gdc_sample_type': 'Primary Tumor' } -C3N-03488.RNA-Seq.R1_L001.T C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 190405_UNC32-K00270_0161_BH55FNBBXY_ACTTGA_S2_L001_R1_001.fastq.gz 4195953922 FASTQ R1_L001 unaligned CPTAC3 2b388b80-b84f-4a89-943e-e13e05469504 84ef94645bb0a189e0dbece517b014dc { 'aliquot_tag': 'ALQ_e1863a36', 'gdc_sample_type': 'Primary Tumor' } -C3N-03488.RNA-Seq.R1_L006.A C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 4278259141 FASTQ R1_L006 unaligned CPTAC3 d25245be-5718-4f6b-92a7-ddb81b277592 833ee8d3d2cf3b3ce47e0756b1ec83bb { 'aliquot_tag': 'ALQ_cf578528', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03488.RNA-Seq.R1_.T C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 20210714_P1_E5_WB7988_plate1_S53_R1_001.fastq.gz 8993429563 FASTQ R1_ unaligned CPTAC3 3719256b-3359-441d-a387-765a7aa6d214 9094ac33d1057a776a939403937eddff { 'aliquot_tag': 'ALQ_ca78b61b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03488.RNA-Seq.R2_L001.T C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 190405_UNC32-K00270_0161_BH55FNBBXY_ACTTGA_S2_L001_R2_001.fastq.gz 4758724724 FASTQ R2_L001 unaligned CPTAC3 5dcdb168-82db-4792-90d9-0d0f84b03cc4 775a45cba584780fa0866cf37819d589 { 'aliquot_tag': 'ALQ_e1863a36', 'gdc_sample_type': 'Primary Tumor' } -C3N-03488.RNA-Seq.R2_L006.A C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4682112501 FASTQ R2_L006 unaligned CPTAC3 8a68abd7-3487-49a1-93bc-601e5cf3626b 481c7c2e5950cce661b829d1d75335f6 { 'aliquot_tag': 'ALQ_cf578528', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03488.RNA-Seq.R2_.T C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 20210714_P1_E5_WB7988_plate1_S53_R2_001.fastq.gz 9236181115 FASTQ R2_ unaligned CPTAC3 d5c7b590-8f6d-4e0e-b43e-1f2cca3bf7c7 dbfaf509d0c64f6c44bb7de87c031363 { 'aliquot_tag': 'ALQ_ca78b61b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03488.RNA-Seq.chimeric.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 db43c1aa-039d-4a01-b82f-52f9e6412a15.rna_seq.chimeric.gdc_realn.bam 155811769 BAM chimeric harmonized CPTAC3 d2857233-ffc1-42cd-925c-a5d29992d928 f5eec91127a1d96919836b7471ba1c76 { 'aliquot_tag': 'ALQ_ca78b61b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03488.RNA-Seq.genomic.A.hg38 C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 645ed983-48cb-4eea-ac3f-5da66d5b81d8.rna_seq.genomic.gdc_realn.bam 9258219343 BAM genomic harmonized CPTAC3 a4245775-f491-458d-bab1-da73588ade4e 8045e3fbc0c89afd7c182190fd5bbd08 { 'aliquot_tag': 'ALQ_cf578528', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03488.RNA-Seq.genomic.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 e639308c-2adb-4a18-9cf8-a3df9b0fb0d7.rna_seq.genomic.gdc_realn.bam 8800054513 BAM genomic harmonized CPTAC3 4a79ee64-38c7-411b-8935-87126a90203e b12789ad7519a0f97c6a7d6b4e1bb5a9 { 'aliquot_tag': 'ALQ_e1863a36', 'gdc_sample_type': 'Primary Tumor' } +C3N-03488.RNA-Seq.genomic.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 db43c1aa-039d-4a01-b82f-52f9e6412a15.rna_seq.genomic.gdc_realn.bam 14821132192 BAM genomic harmonized CPTAC3 791cd084-d0ad-4683-b864-396810e964f3 418ae84dc5f6acb6976a68f841f2eb2c { 'aliquot_tag': 'ALQ_ca78b61b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03488.RNA-Seq.R1_L001.T C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 190405_UNC32-K00270_0161_BH55FNBBXY_ACTTGA_S2_L001_R1_001.fastq.gz 4195953922 FASTQ R1_L001 unaligned CPTAC3 2b388b80-b84f-4a89-943e-e13e05469504 84ef94645bb0a189e0dbece517b014dc { 'aliquot_tag': 'ALQ_e1863a36', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03488.RNA-Seq.R1_L006.A C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGGCC_S21_L006_R1_001.fastq.gz 4278259141 FASTQ R1_L006 unaligned CPTAC3 d25245be-5718-4f6b-92a7-ddb81b277592 833ee8d3d2cf3b3ce47e0756b1ec83bb { 'aliquot_tag': 'ALQ_cf578528', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03488.RNA-Seq.R2_L001.T C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 190405_UNC32-K00270_0161_BH55FNBBXY_ACTTGA_S2_L001_R2_001.fastq.gz 4758724724 FASTQ R2_L001 unaligned CPTAC3 5dcdb168-82db-4792-90d9-0d0f84b03cc4 775a45cba584780fa0866cf37819d589 { 'aliquot_tag': 'ALQ_e1863a36', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03488.RNA-Seq.R2_L006.A C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 190328_UNC31-K00269_0204_BH5F5NBBXY_GTGGCC_S21_L006_R2_001.fastq.gz 4682112501 FASTQ R2_L006 unaligned CPTAC3 8a68abd7-3487-49a1-93bc-601e5cf3626b 481c7c2e5950cce661b829d1d75335f6 { 'aliquot_tag': 'ALQ_cf578528', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-03488.RNA-Seq.T C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 20210714_P1_E5_WB7988_plate1_S53_R1_001.fastq.gz 8993429563 FASTQ unaligned CPTAC3 3719256b-3359-441d-a387-765a7aa6d214 9094ac33d1057a776a939403937eddff +C3N-03488.RNA-Seq.T C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 20210714_P1_E5_WB7988_plate1_S53_R2_001.fastq.gz 9236181115 FASTQ unaligned CPTAC3 d5c7b590-8f6d-4e0e-b43e-1f2cca3bf7c7 dbfaf509d0c64f6c44bb7de87c031363 C3N-03488.RNA-Seq.transcriptome.A.hg38 C3N-03488 HNSCC RNA-Seq tissue_normal CPT0194260006 645ed983-48cb-4eea-ac3f-5da66d5b81d8.rna_seq.transcriptome.gdc_realn.bam 12479106416 BAM transcriptome harmonized CPTAC3 62c554ba-0dcf-496c-ae97-8f2002d78070 bc7aec0a2abcd8ac21d281d0b73b6d14 { 'aliquot_tag': 'ALQ_cf578528', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03488.RNA-Seq.transcriptome.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194250013 e639308c-2adb-4a18-9cf8-a3df9b0fb0d7.rna_seq.transcriptome.gdc_realn.bam 12159401913 BAM transcriptome harmonized CPTAC3 583ed60f-f0bf-42e1-a78f-4beb84efb00e 468d7a8e1ab43e3d2ef9402ab487c6b8 { 'aliquot_tag': 'ALQ_e1863a36', 'gdc_sample_type': 'Primary Tumor' } +C3N-03488.RNA-Seq.transcriptome.T.hg38 C3N-03488 HNSCC RNA-Seq tumor CPT0194290011 db43c1aa-039d-4a01-b82f-52f9e6412a15.rna_seq.transcriptome.gdc_realn.bam 10727269329 BAM transcriptome harmonized CPTAC3 77a6947d-9642-471e-a102-4de23fd37900 546ca390701619ed075dcb9a6106a717 { 'aliquot_tag': 'ALQ_ca78b61b', 'gdc_sample_type': 'Primary Tumor' } C3N-03488.WGS.N C3N-03488 HNSCC WGS blood_normal CPT0194350002 CPT0194350002.WholeGenome.RP-1303.bam 64193374117 BAM aligned CPTAC3 101e9347-a2ee-42f4-aae5-9159a8733977 c3debf6adcc688ff778f9f2647f36a54 { 'aliquot_tag': 'ALQ_44c6e844', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03488.WGS.N.hg38 C3N-03488 HNSCC WGS blood_normal CPT0194350002 5e7082da-c685-4905-98d7-a95507755ab3_wgs_gdc_realn.bam 92342619730 BAM harmonized CPTAC3 1bfb4160-6b19-406d-948d-8205be21b509 9ce0203936c00185f75b6f3d2b78ac27 { 'aliquot_tag': 'ALQ_44c6e844', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03488.WGS.T C3N-03488 HNSCC WGS tumor CPT0194250009 CPT0194250009.WholeGenome.RP-1303.bam 74949739248 BAM aligned CPTAC3 4c5d0deb-01fd-4063-b406-84389245fb9f 5ea9832eb83d3ae12e1314d46716d9b2 { 'aliquot_tag': 'ALQ_1848e269', 'gdc_sample_type': 'Primary Tumor' } @@ -35691,16 +38023,19 @@ C3N-03490.miRNA-Seq.T C3N-03490 HNSCC miRNA-Seq tumor CPT0195680006 190228_UNC32 C3N-03490.miRNA-Seq.T.hg38 C3N-03490 HNSCC miRNA-Seq tumor CPT0195680006 9af36d0b-6d21-474b-a70e-88892d0fbc1a_mirnaseq_gdc_realn.bam 203223081 BAM harmonized CPTAC3 28b487c2-61b6-4b98-a033-e5bf6b1326be 2ee12a10ae9d23a4c09db2823753ad4f { 'aliquot_tag': 'ALQ_4d8172eb', 'gdc_sample_type': 'Primary Tumor' } C3N-03490.RNA-Seq.chimeric.A.hg38 C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 ba31b492-6d7d-4890-bd48-10be7faa27fd.rna_seq.chimeric.gdc_realn.bam 222340632 BAM chimeric harmonized CPTAC3 5ccbefad-c6a8-4dd4-a91b-90d8eefa3e09 d8b25c775aa0c97f86b93693bdf2c9be { 'aliquot_tag': 'ALQ_b6adea8f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03490.RNA-Seq.chimeric.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 b17dce49-b28f-433e-b5c9-31d7c26c84b4.rna_seq.chimeric.gdc_realn.bam 169400394 BAM chimeric harmonized CPTAC3 01c101be-6a5d-4327-8e0a-0a419b436707 8c37bb3d0272f3b5a86cd04610799e4c { 'aliquot_tag': 'ALQ_4d8172eb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03490.RNA-Seq.genomic.A.hg38 C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 ba31b492-6d7d-4890-bd48-10be7faa27fd.rna_seq.genomic.gdc_realn.bam 9487497382 BAM genomic harmonized CPTAC3 655aa516-d983-4aa8-9c52-acb41b369747 4f74a620d4b91dbb55811c734670bd03 { 'aliquot_tag': 'ALQ_b6adea8f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03490.RNA-Seq.genomic.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 b17dce49-b28f-433e-b5c9-31d7c26c84b4.rna_seq.genomic.gdc_realn.bam 5995620242 BAM genomic harmonized CPTAC3 41e6c555-3778-473b-a167-f72a4c8e19e6 7aaa7f9b3d0bdce33fe877889c80cfd9 { 'aliquot_tag': 'ALQ_4d8172eb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03490.RNA-Seq.R1_L005.A C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4569437576 FASTQ R1_L005 unaligned CPTAC3 86d45950-0eb6-41c1-a687-f2b4a3d3153a 36749fcd985362d5f53ab2ab6099a9a2 { 'aliquot_tag': 'ALQ_b6adea8f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03490.RNA-Seq.R1_L008.T C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L008_R1_001.fastq.gz 2692564309 FASTQ R1_L008 unaligned CPTAC3 65900e87-8781-4a1d-a933-6ec5e5b92410 636d1f1f9c000382e5064b013702b951 { 'aliquot_tag': 'ALQ_4d8172eb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03490.RNA-Seq.R1_.T C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 20210723_P2_G1_WB7988-plate2_S73_R1_001.fastq.gz 6583537995 FASTQ R1_ unaligned CPTAC3 fb86a691-9b2e-4072-8484-5e3a8d4be15d 43fa606c612b1216822b75e2ebfba58c { 'aliquot_tag': 'ALQ_4b121d0d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03490.RNA-Seq.R2_L005.A C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 5058158415 FASTQ R2_L005 unaligned CPTAC3 93b85877-4e25-446e-822b-e7b58e2827e6 32d5500f6149e83a78a7e1a26c117a01 { 'aliquot_tag': 'ALQ_b6adea8f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03490.RNA-Seq.R2_L008.T C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L008_R2_001.fastq.gz 2915925896 FASTQ R2_L008 unaligned CPTAC3 5996f568-5955-4a29-b3e9-81f0cc3d868b e05939cd7cbc45ddc795262036ef8a23 { 'aliquot_tag': 'ALQ_4d8172eb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03490.RNA-Seq.R2_.T C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 20210723_P2_G1_WB7988-plate2_S73_R2_001.fastq.gz 6753931081 FASTQ R2_ unaligned CPTAC3 2ccffb64-0bc0-4480-8498-dc158f79e1e1 6e4eb51447f5119393460f8d0dd24ac0 { 'aliquot_tag': 'ALQ_4b121d0d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03490.RNA-Seq.chimeric.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 fe811d03-e73a-41b7-a98b-d1af3f4b32ef.rna_seq.chimeric.gdc_realn.bam 194493673 BAM chimeric harmonized CPTAC3 e34501f7-3e48-4a45-93dc-73490a94b8dd 6e83a6754ab8524043b94d5a16230d37 { 'aliquot_tag': 'ALQ_4b121d0d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03490.RNA-Seq.genomic.A.hg38 C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 ba31b492-6d7d-4890-bd48-10be7faa27fd.rna_seq.genomic.gdc_realn.bam 9487497382 BAM genomic harmonized CPTAC3 cb19d7b0-bc3a-48a1-ab09-c90bdfae9c17 4f74a620d4b91dbb55811c734670bd03 { 'aliquot_tag': 'ALQ_b6adea8f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03490.RNA-Seq.genomic.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 b17dce49-b28f-433e-b5c9-31d7c26c84b4.rna_seq.genomic.gdc_realn.bam 5995620242 BAM genomic harmonized CPTAC3 3f0d7288-a13f-4cad-861e-b3c49936b300 7aaa7f9b3d0bdce33fe877889c80cfd9 { 'aliquot_tag': 'ALQ_4d8172eb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03490.RNA-Seq.genomic.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 fe811d03-e73a-41b7-a98b-d1af3f4b32ef.rna_seq.genomic.gdc_realn.bam 11294754405 BAM genomic harmonized CPTAC3 ca5b8f24-34f7-430e-ab5f-56eff54c27b3 1024921c6ce8ee036d6bef313ba4f9da { 'aliquot_tag': 'ALQ_4b121d0d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03490.RNA-Seq.R1_L005.A C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTGAT_S17_L005_R1_001.fastq.gz 4569437576 FASTQ R1_L005 unaligned CPTAC3 86d45950-0eb6-41c1-a687-f2b4a3d3153a 36749fcd985362d5f53ab2ab6099a9a2 { 'aliquot_tag': 'ALQ_b6adea8f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03490.RNA-Seq.R1_L008.T C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L008_R1_001.fastq.gz 2692564309 FASTQ R1_L008 unaligned CPTAC3 65900e87-8781-4a1d-a933-6ec5e5b92410 636d1f1f9c000382e5064b013702b951 { 'aliquot_tag': 'ALQ_4d8172eb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03490.RNA-Seq.R2_L005.A C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTGAT_S17_L005_R2_001.fastq.gz 5058158415 FASTQ R2_L005 unaligned CPTAC3 93b85877-4e25-446e-822b-e7b58e2827e6 32d5500f6149e83a78a7e1a26c117a01 { 'aliquot_tag': 'ALQ_b6adea8f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03490.RNA-Seq.R2_L008.T C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L008_R2_001.fastq.gz 2915925896 FASTQ R2_L008 unaligned CPTAC3 5996f568-5955-4a29-b3e9-81f0cc3d868b e05939cd7cbc45ddc795262036ef8a23 { 'aliquot_tag': 'ALQ_4d8172eb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03490.RNA-Seq.T C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 20210723_P2_G1_WB7988-plate2_S73_R1_001.fastq.gz 6583537995 FASTQ unaligned CPTAC3 fb86a691-9b2e-4072-8484-5e3a8d4be15d 43fa606c612b1216822b75e2ebfba58c +C3N-03490.RNA-Seq.T C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 20210723_P2_G1_WB7988-plate2_S73_R2_001.fastq.gz 6753931081 FASTQ unaligned CPTAC3 2ccffb64-0bc0-4480-8498-dc158f79e1e1 6e4eb51447f5119393460f8d0dd24ac0 C3N-03490.RNA-Seq.transcriptome.A.hg38 C3N-03490 HNSCC RNA-Seq tissue_normal CPT0195700006 ba31b492-6d7d-4890-bd48-10be7faa27fd.rna_seq.transcriptome.gdc_realn.bam 14378965528 BAM transcriptome harmonized CPTAC3 78d1786e-ca80-42ac-b28a-0b6bce73fb81 f5cb1d36add019e23082be0f7b3e18e7 { 'aliquot_tag': 'ALQ_b6adea8f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03490.RNA-Seq.transcriptome.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195680006 b17dce49-b28f-433e-b5c9-31d7c26c84b4.rna_seq.transcriptome.gdc_realn.bam 7024047485 BAM transcriptome harmonized CPTAC3 1ecc91d3-d033-4d3e-827f-5f1178f00648 b133eba541d7d600f1d11f393ba0022a { 'aliquot_tag': 'ALQ_4d8172eb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03490.RNA-Seq.transcriptome.T.hg38 C3N-03490 HNSCC RNA-Seq tumor CPT0195720011 fe811d03-e73a-41b7-a98b-d1af3f4b32ef.rna_seq.transcriptome.gdc_realn.bam 6392194679 BAM transcriptome harmonized CPTAC3 858dc62f-7936-45ac-bbd9-a9f6b67534e7 fca267bc019a1e7f081d5a037bf58821 { 'aliquot_tag': 'ALQ_4b121d0d', 'gdc_sample_type': 'Primary Tumor' } C3N-03490.WGS.N C3N-03490 HNSCC WGS blood_normal CPT0195790002 CPT0195790002.WholeGenome.RP-1303.bam 71140815108 BAM aligned CPTAC3 2eb1fabf-527f-431b-9b69-e6e617cbe020 ce85cc29d7b1519649d92d31082cebf2 { 'aliquot_tag': 'ALQ_bcd04ce7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03490.WGS.N.hg38 C3N-03490 HNSCC WGS blood_normal CPT0195790002 f000ac5e-b381-4539-bf2b-64b0d92319a2_wgs_gdc_realn.bam 103586674651 BAM harmonized CPTAC3 73946e3d-9ee0-49d1-ac9c-12f70831258f e7d3ece2b8314af141a575217ffcb685 { 'aliquot_tag': 'ALQ_bcd04ce7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03490.WGS.T C3N-03490 HNSCC WGS tumor CPT0195680009 CPT0195680009.WholeGenome.RP-1303.bam 64039305631 BAM aligned CPTAC3 a115e510-476b-48d4-825d-670db9cfc4a7 9f3b83c50a2e11d8dd1466211303d13a { 'aliquot_tag': 'ALQ_dd3e6f7a', 'gdc_sample_type': 'Primary Tumor' } @@ -35721,16 +38056,19 @@ C3N-03612.miRNA-Seq.T C3N-03612 HNSCC miRNA-Seq tumor CPT0194790013 190228_UNC32 C3N-03612.miRNA-Seq.T.hg38 C3N-03612 HNSCC miRNA-Seq tumor CPT0194790013 06e62279-fa76-438b-8552-0235b572e75c_mirnaseq_gdc_realn.bam 255539055 BAM harmonized CPTAC3 0e040661-411f-40cd-a91c-b7484ef5f68c 18e89cb17d69f44158693b820a87d67a { 'aliquot_tag': 'ALQ_74bb4684', 'gdc_sample_type': 'Primary Tumor' } C3N-03612.RNA-Seq.chimeric.A.hg38 C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 82d637dd-e5d3-4919-9255-897330b0b19d.rna_seq.chimeric.gdc_realn.bam 274794213 BAM chimeric harmonized CPTAC3 41dbccc6-df42-4365-9b04-0a01fff18207 a740afc972d3a72c9106aec2ce257fda { 'aliquot_tag': 'ALQ_e18c53ee', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03612.RNA-Seq.chimeric.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 0243bbd9-028a-4f49-979b-b3a01e8aacc0.rna_seq.chimeric.gdc_realn.bam 212910732 BAM chimeric harmonized CPTAC3 ac660a3b-0c99-484e-bcff-444b58ec9d3d 993a2c55c285faf72796028d5bd63048 { 'aliquot_tag': 'ALQ_74bb4684', 'gdc_sample_type': 'Primary Tumor' } -C3N-03612.RNA-Seq.genomic.A.hg38 C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 82d637dd-e5d3-4919-9255-897330b0b19d.rna_seq.genomic.gdc_realn.bam 7413563082 BAM genomic harmonized CPTAC3 9c28c8c7-2224-4101-8c71-8a46dd588e21 561f2f6590c7b8cbd4d191033e3bc902 { 'aliquot_tag': 'ALQ_e18c53ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03612.RNA-Seq.genomic.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 0243bbd9-028a-4f49-979b-b3a01e8aacc0.rna_seq.genomic.gdc_realn.bam 8678217569 BAM genomic harmonized CPTAC3 024d645f-eae8-42d9-bf85-a824a4580af5 a67bd361fc1e33439765a819308b8e85 { 'aliquot_tag': 'ALQ_74bb4684', 'gdc_sample_type': 'Primary Tumor' } -C3N-03612.RNA-Seq.R1_L006.A C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 190328_UNC31-K00269_0204_BH5F5NBBXY_CGTACG_S24_L006_R1_001.fastq.gz 3453599567 FASTQ R1_L006 unaligned CPTAC3 e31308a3-1e28-4348-942a-c93ef9a984e8 fdc61e8e1fe3c2baafcc46fd4b3170ef { 'aliquot_tag': 'ALQ_e18c53ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03612.RNA-Seq.R1_L008.T C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L008_R1_001.fastq.gz 4040392179 FASTQ R1_L008 unaligned CPTAC3 e896cd56-c671-43d9-b4c1-89832620b660 fed3b2a8b57da78abe2c163bfc1e343a { 'aliquot_tag': 'ALQ_74bb4684', 'gdc_sample_type': 'Primary Tumor' } -C3N-03612.RNA-Seq.R1_.T C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 20210714_P1_C5_WB7988_plate1_S29_R1_001.fastq.gz 8100142083 FASTQ R1_ unaligned CPTAC3 ab3319b7-e017-4811-9977-4a9c7afdf333 14d844d049385ef4b6e20af97fa7b251 { 'aliquot_tag': 'ALQ_21538ddc', 'gdc_sample_type': 'Primary Tumor' } -C3N-03612.RNA-Seq.R2_L006.A C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 190328_UNC31-K00269_0204_BH5F5NBBXY_CGTACG_S24_L006_R2_001.fastq.gz 3807189701 FASTQ R2_L006 unaligned CPTAC3 7be1ccd8-b95f-413f-9664-ac3cac74dbbe 8b88c511b629e4cf2364861c6ed2c68f { 'aliquot_tag': 'ALQ_e18c53ee', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03612.RNA-Seq.R2_L008.T C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L008_R2_001.fastq.gz 4548405210 FASTQ R2_L008 unaligned CPTAC3 c46b1fc3-e786-42b0-8895-a002273e5280 19d2ca3d6668b865445037b80a0c0d99 { 'aliquot_tag': 'ALQ_74bb4684', 'gdc_sample_type': 'Primary Tumor' } -C3N-03612.RNA-Seq.R2_.T C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 20210714_P1_C5_WB7988_plate1_S29_R2_001.fastq.gz 8344890773 FASTQ R2_ unaligned CPTAC3 bea7126c-85c5-46f6-92d4-6aedca968aa7 9e6a732911e33b4a599a7a973a61f40b { 'aliquot_tag': 'ALQ_21538ddc', 'gdc_sample_type': 'Primary Tumor' } +C3N-03612.RNA-Seq.chimeric.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 e06c5542-5d65-4aec-bbce-b380963abdf2.rna_seq.chimeric.gdc_realn.bam 211774418 BAM chimeric harmonized CPTAC3 201e334d-31e6-4e3e-b1f0-3018b89e1e1c eb230677c51de030ad8d975236f9ac29 { 'aliquot_tag': 'ALQ_21538ddc', 'gdc_sample_type': 'Primary Tumor' } +C3N-03612.RNA-Seq.genomic.A.hg38 C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 82d637dd-e5d3-4919-9255-897330b0b19d.rna_seq.genomic.gdc_realn.bam 7413563082 BAM genomic harmonized CPTAC3 0c9f41e7-9185-4932-b27d-5870a2b0c641 561f2f6590c7b8cbd4d191033e3bc902 { 'aliquot_tag': 'ALQ_e18c53ee', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03612.RNA-Seq.genomic.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 0243bbd9-028a-4f49-979b-b3a01e8aacc0.rna_seq.genomic.gdc_realn.bam 8678217569 BAM genomic harmonized CPTAC3 f6c436a9-ae2e-4e0c-ae86-8fa836a767f5 a67bd361fc1e33439765a819308b8e85 { 'aliquot_tag': 'ALQ_74bb4684', 'gdc_sample_type': 'Primary Tumor' } +C3N-03612.RNA-Seq.genomic.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 e06c5542-5d65-4aec-bbce-b380963abdf2.rna_seq.genomic.gdc_realn.bam 11619410759 BAM genomic harmonized CPTAC3 fad9d08c-3cd8-4f2c-b513-a913e66210ca 4d4734aeaeea5d0600f6cd46233cca73 { 'aliquot_tag': 'ALQ_21538ddc', 'gdc_sample_type': 'Primary Tumor' } +C3N-03612.RNA-Seq.R1_L006.A C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 190328_UNC31-K00269_0204_BH5F5NBBXY_CGTACG_S24_L006_R1_001.fastq.gz 3453599567 FASTQ R1_L006 unaligned CPTAC3 e31308a3-1e28-4348-942a-c93ef9a984e8 fdc61e8e1fe3c2baafcc46fd4b3170ef { 'aliquot_tag': 'ALQ_e18c53ee', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03612.RNA-Seq.R1_L008.T C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L008_R1_001.fastq.gz 4040392179 FASTQ R1_L008 unaligned CPTAC3 e896cd56-c671-43d9-b4c1-89832620b660 fed3b2a8b57da78abe2c163bfc1e343a { 'aliquot_tag': 'ALQ_74bb4684', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03612.RNA-Seq.R2_L006.A C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 190328_UNC31-K00269_0204_BH5F5NBBXY_CGTACG_S24_L006_R2_001.fastq.gz 3807189701 FASTQ R2_L006 unaligned CPTAC3 7be1ccd8-b95f-413f-9664-ac3cac74dbbe 8b88c511b629e4cf2364861c6ed2c68f { 'aliquot_tag': 'ALQ_e18c53ee', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-03612.RNA-Seq.R2_L008.T C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L008_R2_001.fastq.gz 4548405210 FASTQ R2_L008 unaligned CPTAC3 c46b1fc3-e786-42b0-8895-a002273e5280 19d2ca3d6668b865445037b80a0c0d99 { 'aliquot_tag': 'ALQ_74bb4684', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03612.RNA-Seq.T C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 20210714_P1_C5_WB7988_plate1_S29_R1_001.fastq.gz 8100142083 FASTQ unaligned CPTAC3 ab3319b7-e017-4811-9977-4a9c7afdf333 14d844d049385ef4b6e20af97fa7b251 +C3N-03612.RNA-Seq.T C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 20210714_P1_C5_WB7988_plate1_S29_R2_001.fastq.gz 8344890773 FASTQ unaligned CPTAC3 bea7126c-85c5-46f6-92d4-6aedca968aa7 9e6a732911e33b4a599a7a973a61f40b C3N-03612.RNA-Seq.transcriptome.A.hg38 C3N-03612 HNSCC RNA-Seq tissue_normal CPT0194800006 82d637dd-e5d3-4919-9255-897330b0b19d.rna_seq.transcriptome.gdc_realn.bam 10293730718 BAM transcriptome harmonized CPTAC3 65520f79-19ce-4445-9504-f5ac60540e5e 6615bdd04a169bf05b976afe9cf57009 { 'aliquot_tag': 'ALQ_e18c53ee', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03612.RNA-Seq.transcriptome.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194790013 0243bbd9-028a-4f49-979b-b3a01e8aacc0.rna_seq.transcriptome.gdc_realn.bam 10116996303 BAM transcriptome harmonized CPTAC3 65ba8356-3553-4ecc-8452-9ec986f1fdfd e6413afb53b4363a2dd2286dbd8314fd { 'aliquot_tag': 'ALQ_74bb4684', 'gdc_sample_type': 'Primary Tumor' } +C3N-03612.RNA-Seq.transcriptome.T.hg38 C3N-03612 HNSCC RNA-Seq tumor CPT0194830011 e06c5542-5d65-4aec-bbce-b380963abdf2.rna_seq.transcriptome.gdc_realn.bam 8696601420 BAM transcriptome harmonized CPTAC3 60a4b304-540e-48b0-8de5-322c5f7e49b3 dee4ae455024263750aa91a7983cfbfd { 'aliquot_tag': 'ALQ_21538ddc', 'gdc_sample_type': 'Primary Tumor' } C3N-03612.WGS.N C3N-03612 HNSCC WGS blood_normal CPT0194890002 CPT0194890002.WholeGenome.RP-1303.bam 63702308352 BAM aligned CPTAC3 b7ef698b-15b1-4cc3-a251-71c64991526e b283436315f4ddb1d87cc0fedafd60ad { 'aliquot_tag': 'ALQ_ebf1f586', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03612.WGS.N.hg38 C3N-03612 HNSCC WGS blood_normal CPT0194890002 e8c264c5-c50c-44a4-86e4-97500b965dfd_wgs_gdc_realn.bam 92886518200 BAM harmonized CPTAC3 3adad855-acfe-47c7-86ca-2dca60c49929 f96d57a52cd51090e5da87411f62d6ba { 'aliquot_tag': 'ALQ_ebf1f586', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03612.WGS.T C3N-03612 HNSCC WGS tumor CPT0194790009 CPT0194790009.WholeGenome.RP-1303.bam 70177125578 BAM aligned CPTAC3 ad6eb4a1-e4ef-4263-86dd-a974f7e2af29 efc1c539d72ae86ccbeb2c39bb2702eb { 'aliquot_tag': 'ALQ_8d759edb', 'gdc_sample_type': 'Primary Tumor' } @@ -35751,16 +38089,19 @@ C3N-03619.miRNA-Seq.T C3N-03619 HNSCC miRNA-Seq tumor CPT0195860006 190228_UNC32 C3N-03619.miRNA-Seq.T.hg38 C3N-03619 HNSCC miRNA-Seq tumor CPT0195860006 50e05b42-2f62-4884-8467-5a9cb3331154_mirnaseq_gdc_realn.bam 193120099 BAM harmonized CPTAC3 75c8d8e7-037a-4ad0-b087-5aa828124ff1 50d327da3813401e598f5885cb6c19a5 { 'aliquot_tag': 'ALQ_c8bbadfa', 'gdc_sample_type': 'Primary Tumor' } C3N-03619.RNA-Seq.chimeric.A.hg38 C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 573ed713-ce22-445e-a77a-ba0a2a79644f.rna_seq.chimeric.gdc_realn.bam 143919506 BAM chimeric harmonized CPTAC3 ae0cf5c3-f8e3-425d-957c-1cd67f01a030 03a71b47b7b4254c9fea58e7619d21b5 { 'aliquot_tag': 'ALQ_778b139b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03619.RNA-Seq.chimeric.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 5d1a3afa-5b54-4cb2-8040-dff428cd91c2.rna_seq.chimeric.gdc_realn.bam 346557287 BAM chimeric harmonized CPTAC3 199c8d30-8f7a-4f60-a7e0-60fb4a1803d4 2e17aef9f0fe7dd2bed91536e85fe13e { 'aliquot_tag': 'ALQ_c8bbadfa', 'gdc_sample_type': 'Primary Tumor' } -C3N-03619.RNA-Seq.genomic.A.hg38 C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 573ed713-ce22-445e-a77a-ba0a2a79644f.rna_seq.genomic.gdc_realn.bam 8140726365 BAM genomic harmonized CPTAC3 8ec7d9f1-9d75-4dd3-9707-06a69ea9d522 252cd3ee1343f06263377ca600973eda { 'aliquot_tag': 'ALQ_778b139b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03619.RNA-Seq.chimeric.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 853d0733-e6bb-4eba-85d1-1409e99a5992.rna_seq.chimeric.gdc_realn.bam 19727007 BAM chimeric harmonized CPTAC3 b406fba0-320f-4484-84b3-fdc0022fc23d 958d3bd64dc2111d8d086adc79cac407 { 'aliquot_tag': 'ALQ_bd82f1d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03619.RNA-Seq.genomic.A.hg38 C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 573ed713-ce22-445e-a77a-ba0a2a79644f.rna_seq.genomic.gdc_realn.bam 8140726365 BAM genomic harmonized CPTAC3 78aacc0b-8fa9-4b74-a9d6-20eec217abc4 252cd3ee1343f06263377ca600973eda { 'aliquot_tag': 'ALQ_778b139b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03619.RNA-Seq.genomic.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 5d1a3afa-5b54-4cb2-8040-dff428cd91c2.rna_seq.genomic.gdc_realn.bam 10071719463 BAM genomic harmonized CPTAC3 8277c156-7d5c-422d-911f-80ccd656514c 8524b8c5ec90eea2c2c4a3fa06a9e9c2 { 'aliquot_tag': 'ALQ_c8bbadfa', 'gdc_sample_type': 'Primary Tumor' } -C3N-03619.RNA-Seq.R1_L002.T C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 190405_UNC32-K00270_0161_BH55FNBBXY_ATCACG_S8_L002_R1_001.fastq.gz 4808070607 FASTQ R1_L002 unaligned CPTAC3 45f180f1-f34b-44cd-9d5b-966078330dcf a28528da62515aa3cc5698d71cbce76c { 'aliquot_tag': 'ALQ_c8bbadfa', 'gdc_sample_type': 'Primary Tumor' } -C3N-03619.RNA-Seq.R1_L005.A C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 190328_UNC31-K00269_0204_BH5F5NBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 3884614029 FASTQ R1_L005 unaligned CPTAC3 26426145-5d8e-4bd5-91f4-fd0067a030b4 894d3b3f81cf42e5509b2374ca439173 { 'aliquot_tag': 'ALQ_778b139b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03619.RNA-Seq.R1_.T C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 20210714_P1_A12_WB7988_plate1_S12_R1_001.fastq.gz 4413849755 FASTQ R1_ unaligned CPTAC3 2342b369-0752-4115-b300-e95f111028ed a9e6604d3c287bba7932dd3652166254 { 'aliquot_tag': 'ALQ_bd82f1d', 'gdc_sample_type': 'Primary Tumor' } -C3N-03619.RNA-Seq.R2_L002.T C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 190405_UNC32-K00270_0161_BH55FNBBXY_ATCACG_S8_L002_R2_001.fastq.gz 4772200498 FASTQ R2_L002 unaligned CPTAC3 57ce3495-0c41-4d75-9766-bcad787552a4 4d4e8efef625ba46fff4e61a09122f96 { 'aliquot_tag': 'ALQ_c8bbadfa', 'gdc_sample_type': 'Primary Tumor' } -C3N-03619.RNA-Seq.R2_L005.A C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 190328_UNC31-K00269_0204_BH5F5NBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 4380707783 FASTQ R2_L005 unaligned CPTAC3 655fd063-4b4f-44bd-af52-db6a730a6e85 461a0a5e286ed907727dcf1d637b1aee { 'aliquot_tag': 'ALQ_778b139b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03619.RNA-Seq.R2_.T C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 20210714_P1_A12_WB7988_plate1_S12_R2_001.fastq.gz 5348584965 FASTQ R2_ unaligned CPTAC3 63e6f6cd-a573-4122-82a2-af1d4406b2f5 906e65d76022728f57088ccab0cd30f5 { 'aliquot_tag': 'ALQ_bd82f1d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03619.RNA-Seq.genomic.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 853d0733-e6bb-4eba-85d1-1409e99a5992.rna_seq.genomic.gdc_realn.bam 9703965831 BAM genomic harmonized CPTAC3 af3a8f33-49bb-469f-b049-64386b3d2a8c a716a80d956d86bc5be456d4f4546fdd { 'aliquot_tag': 'ALQ_bd82f1d', 'gdc_sample_type': 'Primary Tumor' } +C3N-03619.RNA-Seq.R1_L002.T C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 190405_UNC32-K00270_0161_BH55FNBBXY_ATCACG_S8_L002_R1_001.fastq.gz 4808070607 FASTQ R1_L002 unaligned CPTAC3 45f180f1-f34b-44cd-9d5b-966078330dcf a28528da62515aa3cc5698d71cbce76c { 'aliquot_tag': 'ALQ_c8bbadfa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03619.RNA-Seq.R1_L005.A C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 190328_UNC31-K00269_0204_BH5F5NBBXY_ATTCCT_S20_L005_R1_001.fastq.gz 3884614029 FASTQ R1_L005 unaligned CPTAC3 26426145-5d8e-4bd5-91f4-fd0067a030b4 894d3b3f81cf42e5509b2374ca439173 { 'aliquot_tag': 'ALQ_778b139b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03619.RNA-Seq.R2_L002.T C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 190405_UNC32-K00270_0161_BH55FNBBXY_ATCACG_S8_L002_R2_001.fastq.gz 4772200498 FASTQ R2_L002 unaligned CPTAC3 57ce3495-0c41-4d75-9766-bcad787552a4 4d4e8efef625ba46fff4e61a09122f96 { 'aliquot_tag': 'ALQ_c8bbadfa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03619.RNA-Seq.R2_L005.A C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 190328_UNC31-K00269_0204_BH5F5NBBXY_ATTCCT_S20_L005_R2_001.fastq.gz 4380707783 FASTQ R2_L005 unaligned CPTAC3 655fd063-4b4f-44bd-af52-db6a730a6e85 461a0a5e286ed907727dcf1d637b1aee { 'aliquot_tag': 'ALQ_778b139b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03619.RNA-Seq.T C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 20210714_P1_A12_WB7988_plate1_S12_R1_001.fastq.gz 4413849755 FASTQ unaligned CPTAC3 2342b369-0752-4115-b300-e95f111028ed a9e6604d3c287bba7932dd3652166254 +C3N-03619.RNA-Seq.T C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 20210714_P1_A12_WB7988_plate1_S12_R2_001.fastq.gz 5348584965 FASTQ unaligned CPTAC3 63e6f6cd-a573-4122-82a2-af1d4406b2f5 906e65d76022728f57088ccab0cd30f5 C3N-03619.RNA-Seq.transcriptome.A.hg38 C3N-03619 HNSCC RNA-Seq tissue_normal CPT0195880006 573ed713-ce22-445e-a77a-ba0a2a79644f.rna_seq.transcriptome.gdc_realn.bam 13453709642 BAM transcriptome harmonized CPTAC3 44e58ede-2f32-4802-af4d-e8bcee0f7239 3d610b886d7081c90531125b8a339877 { 'aliquot_tag': 'ALQ_778b139b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03619.RNA-Seq.transcriptome.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195860006 5d1a3afa-5b54-4cb2-8040-dff428cd91c2.rna_seq.transcriptome.gdc_realn.bam 12549264193 BAM transcriptome harmonized CPTAC3 de8f99ec-8fc8-499f-a82e-07bef001e450 03051d6cb8b6a3b64f028947568dc507 { 'aliquot_tag': 'ALQ_c8bbadfa', 'gdc_sample_type': 'Primary Tumor' } +C3N-03619.RNA-Seq.transcriptome.T.hg38 C3N-03619 HNSCC RNA-Seq tumor CPT0195900011 853d0733-e6bb-4eba-85d1-1409e99a5992.rna_seq.transcriptome.gdc_realn.bam 7954604119 BAM transcriptome harmonized CPTAC3 c9ff6380-4884-4055-a4ed-03a0806052c9 42cc54d00ff4d8ea06cd7cdc49556452 { 'aliquot_tag': 'ALQ_bd82f1d', 'gdc_sample_type': 'Primary Tumor' } C3N-03619.WGS.N C3N-03619 HNSCC WGS blood_normal CPT0195970002 CPT0195970002.WholeGenome.RP-1303.bam 80539719519 BAM aligned CPTAC3 faf6c913-1b41-4749-965d-bf04390b0588 570a7d840ed9e0979cb81f8678f3a40e { 'aliquot_tag': 'ALQ_39ea93f6', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03619.WGS.N.hg38 C3N-03619 HNSCC WGS blood_normal CPT0195970002 43c3ebac-27fa-44dd-960c-59b5836294ae_wgs_gdc_realn.bam 116930583599 BAM harmonized CPTAC3 37263e71-1eea-45d3-8e06-49ea20949b3e 1c8f82608150091bfd9b76a57d147bc0 { 'aliquot_tag': 'ALQ_39ea93f6', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03619.WGS.T C3N-03619 HNSCC WGS tumor CPT0195860009 CPT0195860009.WholeGenome.RP-1303.bam 64407262242 BAM aligned CPTAC3 185626de-667b-4b50-aa37-71b450e01487 a3662fa081a3c2cfc4463c5544ae3949 { 'aliquot_tag': 'ALQ_5804b06b', 'gdc_sample_type': 'Primary Tumor' } @@ -35781,16 +38122,19 @@ C3N-03620.miRNA-Seq.T C3N-03620 HNSCC miRNA-Seq tumor CPT0196040006 190228_UNC32 C3N-03620.miRNA-Seq.T.hg38 C3N-03620 HNSCC miRNA-Seq tumor CPT0196040006 6809cfbd-961f-4c61-8ef8-ba373224d3fd_mirnaseq_gdc_realn.bam 306171844 BAM harmonized CPTAC3 ecb16fce-591c-49ff-a929-f9478ba99513 8b59eabd1ed867e0b28efe6fe8758e7a { 'aliquot_tag': 'ALQ_6fc0666a', 'gdc_sample_type': 'Primary Tumor' } C3N-03620.RNA-Seq.chimeric.A.hg38 C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 43a16e20-5897-4620-ae0d-c06c549ace82.rna_seq.chimeric.gdc_realn.bam 106201699 BAM chimeric harmonized CPTAC3 10393522-aabf-47b2-89c8-e8927091963d caf7903b615d5ad81575664cecdfc8c7 { 'aliquot_tag': 'ALQ_85bf289b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03620.RNA-Seq.chimeric.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 60c5c209-418b-4ac6-a29d-1d9e8478a2c1.rna_seq.chimeric.gdc_realn.bam 341112205 BAM chimeric harmonized CPTAC3 8aac3009-a874-4044-b78c-a6bb1d525df5 353ddfd216ae738982843ba920c23582 { 'aliquot_tag': 'ALQ_6fc0666a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03620.RNA-Seq.chimeric.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 4be3c348-2d0d-439c-ac9f-b72ddb5f63cf.rna_seq.chimeric.gdc_realn.bam 44729177 BAM chimeric harmonized CPTAC3 9147a272-5433-4347-a44f-be7291bc2cdd d1d34873bc2eb8af5bf465a209ca7db3 { 'aliquot_tag': 'ALQ_2d4f2f89', 'gdc_sample_type': 'Primary Tumor' } C3N-03620.RNA-Seq.genomic.A.hg38 C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 43a16e20-5897-4620-ae0d-c06c549ace82.rna_seq.genomic.gdc_realn.bam 9086424289 BAM genomic harmonized CPTAC3 92536091-c436-4f76-9c6a-e443c419435f 13170a39d936a10d0f136800bee3d42e { 'aliquot_tag': 'ALQ_85bf289b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03620.RNA-Seq.genomic.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 60c5c209-418b-4ac6-a29d-1d9e8478a2c1.rna_seq.genomic.gdc_realn.bam 8803420795 BAM genomic harmonized CPTAC3 05dc0508-5958-4d89-8885-5f60fcf50fec 222b9cdc029b960072ce6148d6044ad0 { 'aliquot_tag': 'ALQ_6fc0666a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03620.RNA-Seq.R1_L002.T C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 190405_UNC32-K00270_0161_BH55FNBBXY_CGATGT_S7_L002_R1_001.fastq.gz 4201795294 FASTQ R1_L002 unaligned CPTAC3 f9182b2a-3f82-4cb2-9fce-04d4ec52d12c 734832dbfb7116d1a8bdabd169fdac39 { 'aliquot_tag': 'ALQ_6fc0666a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03620.RNA-Seq.R1_L006.A C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 190328_UNC31-K00269_0204_BH5F5NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4474669107 FASTQ R1_L006 unaligned CPTAC3 c6c8ddb3-8b66-44ad-af9d-b431a1160455 ab0be6fccbd59abd74dda9f2267239fe { 'aliquot_tag': 'ALQ_85bf289b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03620.RNA-Seq.R1_.T C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 20210729_P3_C8_WB7988-Plate3_S32_R1_001.fastq.gz 4438347595 FASTQ R1_ unaligned CPTAC3 d3ac1a9d-1e0b-4dc6-a67b-624659a500d1 0234675d9a532020aaa8de264cd4900c { 'aliquot_tag': 'ALQ_2d4f2f89', 'gdc_sample_type': 'Primary Tumor' } -C3N-03620.RNA-Seq.R2_L002.T C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 190405_UNC32-K00270_0161_BH55FNBBXY_CGATGT_S7_L002_R2_001.fastq.gz 4618291871 FASTQ R2_L002 unaligned CPTAC3 b1e05041-835d-4a7c-9ed4-6c26cfcec65d 45f85d3fe2d364eb93c9e845a8949929 { 'aliquot_tag': 'ALQ_6fc0666a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03620.RNA-Seq.R2_L006.A C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 190328_UNC31-K00269_0204_BH5F5NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4558418470 FASTQ R2_L006 unaligned CPTAC3 5eee2bc0-0147-4040-a102-ad2b48914fd5 b418936bb657cc3e373578161923459f { 'aliquot_tag': 'ALQ_85bf289b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03620.RNA-Seq.R2_.T C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 20210729_P3_C8_WB7988-Plate3_S32_R2_001.fastq.gz 4680024141 FASTQ R2_ unaligned CPTAC3 cbfacd37-5f5c-4541-bc38-70fbdd73c3d7 6c1ef86141d15165733c55a378068eef { 'aliquot_tag': 'ALQ_2d4f2f89', 'gdc_sample_type': 'Primary Tumor' } +C3N-03620.RNA-Seq.genomic.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 60c5c209-418b-4ac6-a29d-1d9e8478a2c1.rna_seq.genomic.gdc_realn.bam 8803420795 BAM genomic harmonized CPTAC3 590224ab-eac6-47e7-88d3-c41f36dbf423 222b9cdc029b960072ce6148d6044ad0 { 'aliquot_tag': 'ALQ_6fc0666a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03620.RNA-Seq.genomic.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 4be3c348-2d0d-439c-ac9f-b72ddb5f63cf.rna_seq.genomic.gdc_realn.bam 8394680505 BAM genomic harmonized CPTAC3 3d4b0d69-f2ad-499b-92e9-7218b4c19719 34730347c70fe9782896b9fee25abab8 { 'aliquot_tag': 'ALQ_2d4f2f89', 'gdc_sample_type': 'Primary Tumor' } +C3N-03620.RNA-Seq.R1_L002.T C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 190405_UNC32-K00270_0161_BH55FNBBXY_CGATGT_S7_L002_R1_001.fastq.gz 4201795294 FASTQ R1_L002 unaligned CPTAC3 f9182b2a-3f82-4cb2-9fce-04d4ec52d12c 734832dbfb7116d1a8bdabd169fdac39 { 'aliquot_tag': 'ALQ_6fc0666a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03620.RNA-Seq.R1_L006.A C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 190328_UNC31-K00269_0204_BH5F5NBBXY_CCGTCC_S22_L006_R1_001.fastq.gz 4474669107 FASTQ R1_L006 unaligned CPTAC3 c6c8ddb3-8b66-44ad-af9d-b431a1160455 ab0be6fccbd59abd74dda9f2267239fe { 'aliquot_tag': 'ALQ_85bf289b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03620.RNA-Seq.R2_L002.T C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 190405_UNC32-K00270_0161_BH55FNBBXY_CGATGT_S7_L002_R2_001.fastq.gz 4618291871 FASTQ R2_L002 unaligned CPTAC3 b1e05041-835d-4a7c-9ed4-6c26cfcec65d 45f85d3fe2d364eb93c9e845a8949929 { 'aliquot_tag': 'ALQ_6fc0666a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03620.RNA-Seq.R2_L006.A C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 190328_UNC31-K00269_0204_BH5F5NBBXY_CCGTCC_S22_L006_R2_001.fastq.gz 4558418470 FASTQ R2_L006 unaligned CPTAC3 5eee2bc0-0147-4040-a102-ad2b48914fd5 b418936bb657cc3e373578161923459f { 'aliquot_tag': 'ALQ_85bf289b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-03620.RNA-Seq.T C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 20210729_P3_C8_WB7988-Plate3_S32_R1_001.fastq.gz 4438347595 FASTQ unaligned CPTAC3 d3ac1a9d-1e0b-4dc6-a67b-624659a500d1 0234675d9a532020aaa8de264cd4900c +C3N-03620.RNA-Seq.T C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 20210729_P3_C8_WB7988-Plate3_S32_R2_001.fastq.gz 4680024141 FASTQ unaligned CPTAC3 cbfacd37-5f5c-4541-bc38-70fbdd73c3d7 6c1ef86141d15165733c55a378068eef C3N-03620.RNA-Seq.transcriptome.A.hg38 C3N-03620 HNSCC RNA-Seq tissue_normal CPT0196060009 43a16e20-5897-4620-ae0d-c06c549ace82.rna_seq.transcriptome.gdc_realn.bam 12956692466 BAM transcriptome harmonized CPTAC3 e00d1560-0a8c-4b05-9707-7972479d3679 77d6965e74b6b14c77de75cf1171adcd { 'aliquot_tag': 'ALQ_85bf289b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03620.RNA-Seq.transcriptome.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196040006 60c5c209-418b-4ac6-a29d-1d9e8478a2c1.rna_seq.transcriptome.gdc_realn.bam 11697653369 BAM transcriptome harmonized CPTAC3 6e4b0938-be83-4098-83a9-f4b6c27036a8 e3fd54e1a6dda1b6b3169a48df8862e7 { 'aliquot_tag': 'ALQ_6fc0666a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03620.RNA-Seq.transcriptome.T.hg38 C3N-03620 HNSCC RNA-Seq tumor CPT0196080011 4be3c348-2d0d-439c-ac9f-b72ddb5f63cf.rna_seq.transcriptome.gdc_realn.bam 5238719378 BAM transcriptome harmonized CPTAC3 e9444cb8-6a1e-41a2-9ea8-10f88252b587 f22e2e4832bfe6efe94be8536893d092 { 'aliquot_tag': 'ALQ_2d4f2f89', 'gdc_sample_type': 'Primary Tumor' } C3N-03620.WGS.N C3N-03620 HNSCC WGS blood_normal CPT0196150002 CPT0196150002.WholeGenome.RP-1303.bam 69775404033 BAM aligned CPTAC3 6eb12754-b0f6-4b8d-aabb-40106db5f7da 73beed9e2b1088bf4a69295ef814d62d { 'aliquot_tag': 'ALQ_9e915866', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03620.WGS.N.hg38 C3N-03620 HNSCC WGS blood_normal CPT0196150002 ef04af76-839e-4c25-865a-2d38baa77ab2_wgs_gdc_realn.bam 103195179411 BAM harmonized CPTAC3 2697fc85-d00b-43cf-947e-52ef825d7970 a56f98643333f1d363d4afa9c2fb2b54 { 'aliquot_tag': 'ALQ_9e915866', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03620.WGS.T C3N-03620 HNSCC WGS tumor CPT0196040009 CPT0196040009.WholeGenome.RP-1303.bam 77825353336 BAM aligned CPTAC3 404bde09-2cdc-458f-92cd-d53d3aa9c452 a042be1b128848c98875376285ffbec5 { 'aliquot_tag': 'ALQ_ff7f7bfb', 'gdc_sample_type': 'Primary Tumor' } @@ -35806,9 +38150,9 @@ C3N-03662.MethArray.Red.T C3N-03662 LSCC Methylation Array tumor CPT0219360006 2 C3N-03662.miRNA-Seq.T C3N-03662 LSCC miRNA-Seq tumor CPT0219360009 190206_UNC31-K00269_0191_AH2WY5BBXY_ACTGAT_S1_L003_R1_001.unaln.bam 156706673 BAM unaligned CPTAC3 4afbe82e-1024-4102-98b8-705aca20a693 a974ad96bf21a7cc66d6e9600d92dd66 { 'aliquot_tag': 'ALQ_1f0b0dac', 'gdc_sample_type': 'Primary Tumor' } C3N-03662.miRNA-Seq.T.hg38 C3N-03662 LSCC miRNA-Seq tumor CPT0219360009 e06766bd-6776-461a-b1f4-3992cb06bc5e_mirnaseq_gdc_realn.bam 174889646 BAM harmonized CPTAC3 1e74f949-bbb5-4dc7-9c51-b878c67b3d47 ff4388df5f94ecca3fad84ef991f3e01 { 'aliquot_tag': 'ALQ_1f0b0dac', 'gdc_sample_type': 'Primary Tumor' } C3N-03662.RNA-Seq.chimeric.T.hg38 C3N-03662 LSCC RNA-Seq tumor CPT0219360009 2b000b8d-c9dc-4d75-bfba-33f585d48474.rna_seq.chimeric.gdc_realn.bam 185627489 BAM chimeric harmonized CPTAC3 4774a773-1519-43d9-9d93-e9520cc8795d 4d0a0304e06589add0533915013c2b54 { 'aliquot_tag': 'ALQ_1f0b0dac', 'gdc_sample_type': 'Primary Tumor' } -C3N-03662.RNA-Seq.genomic.T.hg38 C3N-03662 LSCC RNA-Seq tumor CPT0219360009 2b000b8d-c9dc-4d75-bfba-33f585d48474.rna_seq.genomic.gdc_realn.bam 8220417261 BAM genomic harmonized CPTAC3 f1ece5e6-384d-4533-9a05-cd61d80f3db2 d007679c7f7214aab4ae988dcfe42e5e { 'aliquot_tag': 'ALQ_1f0b0dac', 'gdc_sample_type': 'Primary Tumor' } -C3N-03662.RNA-Seq.R1_L008.T C3N-03662 LSCC RNA-Seq tumor CPT0219360009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L008_R1_001.fastq.gz 3708953372 FASTQ R1_L008 unaligned CPTAC3 240c7214-e86d-4c8b-aaa2-e18fd1b9ba99 584e38215fdf1ac84f65135dd6ed8ff8 { 'aliquot_tag': 'ALQ_1f0b0dac', 'gdc_sample_type': 'Primary Tumor' } -C3N-03662.RNA-Seq.R2_L008.T C3N-03662 LSCC RNA-Seq tumor CPT0219360009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L008_R2_001.fastq.gz 3671554318 FASTQ R2_L008 unaligned CPTAC3 74607372-0396-4558-b39b-64c0b5a93226 607f7c29000bc9e67bb852ad14baca80 { 'aliquot_tag': 'ALQ_1f0b0dac', 'gdc_sample_type': 'Primary Tumor' } +C3N-03662.RNA-Seq.genomic.T.hg38 C3N-03662 LSCC RNA-Seq tumor CPT0219360009 2b000b8d-c9dc-4d75-bfba-33f585d48474.rna_seq.genomic.gdc_realn.bam 8220417261 BAM genomic harmonized CPTAC3 60dcb910-968c-41ae-88c8-02f6f2761aba d007679c7f7214aab4ae988dcfe42e5e { 'aliquot_tag': 'ALQ_1f0b0dac', 'gdc_sample_type': 'Primary Tumor' } +C3N-03662.RNA-Seq.R1_L008.T C3N-03662 LSCC RNA-Seq tumor CPT0219360009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L008_R1_001.fastq.gz 3708953372 FASTQ R1_L008 unaligned CPTAC3 240c7214-e86d-4c8b-aaa2-e18fd1b9ba99 584e38215fdf1ac84f65135dd6ed8ff8 { 'aliquot_tag': 'ALQ_1f0b0dac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03662.RNA-Seq.R2_L008.T C3N-03662 LSCC RNA-Seq tumor CPT0219360009 190205_UNC32-K00270_0144_BH3M3NBBXY_ATCACG_S9_L008_R2_001.fastq.gz 3671554318 FASTQ R2_L008 unaligned CPTAC3 74607372-0396-4558-b39b-64c0b5a93226 607f7c29000bc9e67bb852ad14baca80 { 'aliquot_tag': 'ALQ_1f0b0dac', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-03662.RNA-Seq.transcriptome.T.hg38 C3N-03662 LSCC RNA-Seq tumor CPT0219360009 2b000b8d-c9dc-4d75-bfba-33f585d48474.rna_seq.transcriptome.gdc_realn.bam 7633633734 BAM transcriptome harmonized CPTAC3 7fb60673-ef38-433a-bdd7-06cdeb2213f9 ac2231638d786d6b77cc7d5779331037 { 'aliquot_tag': 'ALQ_1f0b0dac', 'gdc_sample_type': 'Primary Tumor' } C3N-03662.WGS.N C3N-03662 LSCC WGS blood_normal CPT0219480002 CPT0219480002.WholeGenome.RP-1303.bam 60839750259 BAM aligned CPTAC3 9d2c118b-d451-4a19-a394-24e3b96c333b 94ec631a5cd3b44222d3a634edc39981 { 'aliquot_tag': 'ALQ_2aec5afd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03662.WGS.N.hg38 C3N-03662 LSCC WGS blood_normal CPT0219480002 eea6f712-9bd3-4c3e-af23-f9e3ad5e012e_wgs_gdc_realn.bam 88929296282 BAM harmonized CPTAC3 2ced49b5-6daa-47a3-985c-0f1837fed681 050222b829d752557ee0998f99da31ce { 'aliquot_tag': 'ALQ_2aec5afd', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35823,12 +38167,15 @@ C3N-03664.MethArray.Red.T C3N-03664 HNSCC Methylation Array tumor CPT0196210009 C3N-03664.miRNA-Seq.T C3N-03664 HNSCC miRNA-Seq tumor CPT0196210006 190228_UNC32-K00270_0151_AHYLY3BBXX_TTAGGC_S3_L003_R1_001.unaln.bam 216720616 BAM unaligned CPTAC3 737e5013-b4db-4ca9-9f6f-d3121875798b 9bc30b261f235a8c7d24231abcde9dff { 'aliquot_tag': 'ALQ_eae84811', 'gdc_sample_type': 'Primary Tumor' } C3N-03664.miRNA-Seq.T.hg38 C3N-03664 HNSCC miRNA-Seq tumor CPT0196210006 d43771b5-fe0e-4c5a-9ec0-d6bdfa4c6108_mirnaseq_gdc_realn.bam 238724317 BAM harmonized CPTAC3 6f6c61f0-a6d1-42c6-94f5-ff9b62897af6 f369541220f7016582a098af83c9213c { 'aliquot_tag': 'ALQ_eae84811', 'gdc_sample_type': 'Primary Tumor' } C3N-03664.RNA-Seq.chimeric.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 72cc7035-01db-41a4-830a-247eb875df40.rna_seq.chimeric.gdc_realn.bam 313182026 BAM chimeric harmonized CPTAC3 e2a7294f-4ce7-442c-8a80-b64229d3979f 599437fd5d933a8b637317520a61090b { 'aliquot_tag': 'ALQ_eae84811', 'gdc_sample_type': 'Primary Tumor' } -C3N-03664.RNA-Seq.genomic.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 72cc7035-01db-41a4-830a-247eb875df40.rna_seq.genomic.gdc_realn.bam 8517599165 BAM genomic harmonized CPTAC3 5927e66a-ec1f-4fb4-88fa-64e3580d60a2 31fb0c7cfc1f95ebd620c2f51c54f5fc { 'aliquot_tag': 'ALQ_eae84811', 'gdc_sample_type': 'Primary Tumor' } -C3N-03664.RNA-Seq.R1_L002.T C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 190405_UNC32-K00270_0161_BH55FNBBXY_TTAGGC_S6_L002_R1_001.fastq.gz 3996768137 FASTQ R1_L002 unaligned CPTAC3 0b6603c5-2b74-4ac3-baf2-a198861141cc 31b0b7903a454f56c702bb7f177be73a { 'aliquot_tag': 'ALQ_eae84811', 'gdc_sample_type': 'Primary Tumor' } -C3N-03664.RNA-Seq.R1_.T C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 20210714_P1_B7_WB7988_plate1_S19_R1_001.fastq.gz 4210695987 FASTQ R1_ unaligned CPTAC3 431c6831-fb98-4b46-adbc-870923a81a7a b48981f0520f5ec0921943427aaffd53 { 'aliquot_tag': 'ALQ_98174a33', 'gdc_sample_type': 'Primary Tumor' } -C3N-03664.RNA-Seq.R2_L002.T C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 190405_UNC32-K00270_0161_BH55FNBBXY_TTAGGC_S6_L002_R2_001.fastq.gz 4427155254 FASTQ R2_L002 unaligned CPTAC3 f10b2fb9-e10b-4d85-b43d-04af9bbf70fc cea23030bc7b72624b941eba24d0036d { 'aliquot_tag': 'ALQ_eae84811', 'gdc_sample_type': 'Primary Tumor' } -C3N-03664.RNA-Seq.R2_.T C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 20210714_P1_B7_WB7988_plate1_S19_R2_001.fastq.gz 4313743776 FASTQ R2_ unaligned CPTAC3 9c03fb3f-0d0e-448e-af0e-a05027feda71 45a2fc3b99faf27c76ac5aa58460ed93 { 'aliquot_tag': 'ALQ_98174a33', 'gdc_sample_type': 'Primary Tumor' } +C3N-03664.RNA-Seq.chimeric.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 aa8d4ceb-8024-4c6b-b1a8-e848e900edeb.rna_seq.chimeric.gdc_realn.bam 104375043 BAM chimeric harmonized CPTAC3 37b45ea4-6558-4f22-8763-c8255dd55b91 b70fde331b1d0e7417868677cc309400 { 'aliquot_tag': 'ALQ_98174a33', 'gdc_sample_type': 'Primary Tumor' } +C3N-03664.RNA-Seq.genomic.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 72cc7035-01db-41a4-830a-247eb875df40.rna_seq.genomic.gdc_realn.bam 8517599165 BAM genomic harmonized CPTAC3 38c631a8-7d57-4512-8c66-7a051a278bd4 31fb0c7cfc1f95ebd620c2f51c54f5fc { 'aliquot_tag': 'ALQ_eae84811', 'gdc_sample_type': 'Primary Tumor' } +C3N-03664.RNA-Seq.genomic.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 aa8d4ceb-8024-4c6b-b1a8-e848e900edeb.rna_seq.genomic.gdc_realn.bam 6727955624 BAM genomic harmonized CPTAC3 09d6300b-4c7c-49bd-bea8-1e25204bfcc3 1fea0569580552b1d436d933edd67842 { 'aliquot_tag': 'ALQ_98174a33', 'gdc_sample_type': 'Primary Tumor' } +C3N-03664.RNA-Seq.R1_L002.T C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 190405_UNC32-K00270_0161_BH55FNBBXY_TTAGGC_S6_L002_R1_001.fastq.gz 3996768137 FASTQ R1_L002 unaligned CPTAC3 0b6603c5-2b74-4ac3-baf2-a198861141cc 31b0b7903a454f56c702bb7f177be73a { 'aliquot_tag': 'ALQ_eae84811', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03664.RNA-Seq.R2_L002.T C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 190405_UNC32-K00270_0161_BH55FNBBXY_TTAGGC_S6_L002_R2_001.fastq.gz 4427155254 FASTQ R2_L002 unaligned CPTAC3 f10b2fb9-e10b-4d85-b43d-04af9bbf70fc cea23030bc7b72624b941eba24d0036d { 'aliquot_tag': 'ALQ_eae84811', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03664.RNA-Seq.T C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 20210714_P1_B7_WB7988_plate1_S19_R1_001.fastq.gz 4210695987 FASTQ unaligned CPTAC3 431c6831-fb98-4b46-adbc-870923a81a7a b48981f0520f5ec0921943427aaffd53 +C3N-03664.RNA-Seq.T C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 20210714_P1_B7_WB7988_plate1_S19_R2_001.fastq.gz 4313743776 FASTQ unaligned CPTAC3 9c03fb3f-0d0e-448e-af0e-a05027feda71 45a2fc3b99faf27c76ac5aa58460ed93 C3N-03664.RNA-Seq.transcriptome.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196210006 72cc7035-01db-41a4-830a-247eb875df40.rna_seq.transcriptome.gdc_realn.bam 11540362774 BAM transcriptome harmonized CPTAC3 50476465-c470-423b-8c39-c02b9ed39d5d 757bd4e10185cb22417272a05cb9a02b { 'aliquot_tag': 'ALQ_eae84811', 'gdc_sample_type': 'Primary Tumor' } +C3N-03664.RNA-Seq.transcriptome.T.hg38 C3N-03664 HNSCC RNA-Seq tumor CPT0196250011 aa8d4ceb-8024-4c6b-b1a8-e848e900edeb.rna_seq.transcriptome.gdc_realn.bam 4277971072 BAM transcriptome harmonized CPTAC3 e19e7eca-e8f2-40a4-ae10-a1c9c3db0f55 bf0482eb40b02e38709228327f3a54cd { 'aliquot_tag': 'ALQ_98174a33', 'gdc_sample_type': 'Primary Tumor' } C3N-03664.WGS.N C3N-03664 HNSCC WGS blood_normal CPT0196330002 CPT0196330002.WholeGenome.RP-1303.bam 67737829626 BAM aligned CPTAC3 0f503909-d6f8-4b98-9ed4-6da82f2bbe23 c8aec7f17a4ca9459db4f31f46d76ec3 { 'aliquot_tag': 'ALQ_5c190ccd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03664.WGS.N.hg38 C3N-03664 HNSCC WGS blood_normal CPT0196330002 87278be5-880b-403e-96ef-4556bc85a926_wgs_gdc_realn.bam 97245040114 BAM harmonized CPTAC3 ce108c0f-e488-4b39-bd3d-1614c8e4e9f2 e1b5317fc1f8ab7f423d3b5b1c10b657 { 'aliquot_tag': 'ALQ_5c190ccd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03664.WGS.T C3N-03664 HNSCC WGS tumor CPT0196210009 CPT0196210009.WholeGenome.RP-1303.bam 78907430986 BAM aligned CPTAC3 c55a97c7-50fb-4fd1-9d58-34a7f6204c3c c55dece2394b5a455f4f6a580910d247 { 'aliquot_tag': 'ALQ_7a575580', 'gdc_sample_type': 'Primary Tumor' } @@ -35842,9 +38189,9 @@ C3N-03665.MethArray.Red.T C3N-03665 PDA Methylation Array tumor CPT0226760007 20 C3N-03665.miRNA-Seq.T C3N-03665 PDA miRNA-Seq tumor CPT0226760010 190813_UNC32-K00270_0196_AH5MCWBBXY_ACTTGA_S37_L004_R1_001.unaln.bam 529849778 BAM unaligned CPTAC3 901b4de0-6074-46f0-8a37-1814179588cc 275d1b5b7c0da9ae4ffef7ac2f1e5431 { 'aliquot_tag': 'ALQ_9c9ab155', 'gdc_sample_type': 'Primary Tumor' } C3N-03665.miRNA-Seq.T.hg38 C3N-03665 PDA miRNA-Seq tumor CPT0226760010 f267e13b-6548-4b97-9fab-0c90044775d8_mirnaseq_gdc_realn.bam 590655875 BAM harmonized CPTAC3 6146e431-ad3b-424f-9499-851aa31d4e24 523998ab7057032d0c8e05192ef38284 { 'aliquot_tag': 'ALQ_9c9ab155', 'gdc_sample_type': 'Primary Tumor' } C3N-03665.RNA-Seq.chimeric.T.hg38 C3N-03665 PDA RNA-Seq tumor CPT0226760010 1ba4d369-449e-4361-b121-018fccc655a6.rna_seq.chimeric.gdc_realn.bam 114374577 BAM chimeric harmonized CPTAC3 c8f98cce-cbb5-47f3-8d9f-a9ec26b68db2 c53f44c80301689039b92c1cfe56b6bc { 'aliquot_tag': 'ALQ_9c9ab155', 'gdc_sample_type': 'Primary Tumor' } -C3N-03665.RNA-Seq.genomic.T.hg38 C3N-03665 PDA RNA-Seq tumor CPT0226760010 1ba4d369-449e-4361-b121-018fccc655a6.rna_seq.genomic.gdc_realn.bam 6276418354 BAM genomic harmonized CPTAC3 a7598a4c-3a19-4f95-b1d5-ec5030e8d6a8 2c456162d11c9fd1f1baf8126ffadbfe { 'aliquot_tag': 'ALQ_9c9ab155', 'gdc_sample_type': 'Primary Tumor' } -C3N-03665.RNA-Seq.R1_L002.T C3N-03665 PDA RNA-Seq tumor CPT0226760010 190725_UNC32-K00270_0194_AH7HHFBBXY_GAATGAGA-GAGGCATT_S5_L002_R1_001.fastq.gz 2196094856 FASTQ R1_L002 unaligned CPTAC3 a8afbdde-3a80-43ee-acc6-e5a39caa4a94 521057f419d8fd4c058b91e1f6138164 { 'aliquot_tag': 'ALQ_9c9ab155', 'gdc_sample_type': 'Primary Tumor' } -C3N-03665.RNA-Seq.R2_L002.T C3N-03665 PDA RNA-Seq tumor CPT0226760010 190725_UNC32-K00270_0194_AH7HHFBBXY_GAATGAGA-GAGGCATT_S5_L002_R2_001.fastq.gz 2177876854 FASTQ R2_L002 unaligned CPTAC3 26a833e9-1895-4c79-b299-a64162b49ee2 764d369e05046a22a3b8b5793698b037 { 'aliquot_tag': 'ALQ_9c9ab155', 'gdc_sample_type': 'Primary Tumor' } +C3N-03665.RNA-Seq.genomic.T.hg38 C3N-03665 PDA RNA-Seq tumor CPT0226760010 1ba4d369-449e-4361-b121-018fccc655a6.rna_seq.genomic.gdc_realn.bam 6276418354 BAM genomic harmonized CPTAC3 37b10f77-306f-4b1a-9ef7-355a17c705ee 2c456162d11c9fd1f1baf8126ffadbfe { 'aliquot_tag': 'ALQ_9c9ab155', 'gdc_sample_type': 'Primary Tumor' } +C3N-03665.RNA-Seq.R1_L002.T C3N-03665 PDA RNA-Seq tumor CPT0226760010 190725_UNC32-K00270_0194_AH7HHFBBXY_GAATGAGA-GAGGCATT_S5_L002_R1_001.fastq.gz 2196094856 FASTQ R1_L002 unaligned CPTAC3 a8afbdde-3a80-43ee-acc6-e5a39caa4a94 521057f419d8fd4c058b91e1f6138164 { 'aliquot_tag': 'ALQ_9c9ab155', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03665.RNA-Seq.R2_L002.T C3N-03665 PDA RNA-Seq tumor CPT0226760010 190725_UNC32-K00270_0194_AH7HHFBBXY_GAATGAGA-GAGGCATT_S5_L002_R2_001.fastq.gz 2177876854 FASTQ R2_L002 unaligned CPTAC3 26a833e9-1895-4c79-b299-a64162b49ee2 764d369e05046a22a3b8b5793698b037 { 'aliquot_tag': 'ALQ_9c9ab155', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-03665.RNA-Seq.transcriptome.T.hg38 C3N-03665 PDA RNA-Seq tumor CPT0226760010 1ba4d369-449e-4361-b121-018fccc655a6.rna_seq.transcriptome.gdc_realn.bam 4928449211 BAM transcriptome harmonized CPTAC3 bd07199d-ec91-418b-856f-1e6d6b16ccc1 5bd10e4715944d9bfe6d7546f33aa5ef { 'aliquot_tag': 'ALQ_9c9ab155', 'gdc_sample_type': 'Primary Tumor' } C3N-03665.WGS.N C3N-03665 PDA WGS blood_normal CPT0226800002 CPT0226800002.WholeGenome.RP-1303.bam 75055670922 BAM aligned CPTAC3 0c9b85ac-0698-45f3-826f-96e9cb83a4ea c2ee090850bdb4720d0de6c5206209d5 { 'aliquot_tag': 'ALQ_1599a64d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03665.WGS.N.hg38 C3N-03665 PDA WGS blood_normal CPT0226800002 1cdbcb35-ccb2-4bbe-9adb-1ac5f24201c2_wgs_gdc_realn.bam 111106725361 BAM harmonized CPTAC3 c014d68a-265f-49a4-bc80-b378e2593931 33ac58df80d5edcedf98c4be74ca4729 { 'aliquot_tag': 'ALQ_1599a64d', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35860,8 +38207,8 @@ C3N-03666.miRNA-Seq.T C3N-03666 PDA miRNA-Seq tumor CPT0246720009 190813_UNC32-K C3N-03666.miRNA-Seq.T.hg38 C3N-03666 PDA miRNA-Seq tumor CPT0246720009 ffca87bf-40ec-444f-b020-6d7e9131e27a_mirnaseq_gdc_realn.bam 128370410 BAM harmonized CPTAC3 30122042-6ade-4181-9390-4195edd77a0d 341b11aae97c53aec7fb6d2624034bae { 'aliquot_tag': 'ALQ_cfb297f7', 'gdc_sample_type': 'Primary Tumor' } C3N-03666.RNA-Seq.chimeric.T.hg38 C3N-03666 PDA RNA-Seq tumor CPT0246720009 1662474e-d419-418d-942c-b696b6bdb97b.rna_seq.chimeric.gdc_realn.bam 194242212 BAM chimeric harmonized CPTAC3 9cbf529f-8ec7-402a-9cb4-10fbef44ba6b 6c0f3d799d76489a6b8b7f0bc87391c0 { 'aliquot_tag': 'ALQ_cfb297f7', 'gdc_sample_type': 'Primary Tumor' } C3N-03666.RNA-Seq.genomic.T.hg38 C3N-03666 PDA RNA-Seq tumor CPT0246720009 1662474e-d419-418d-942c-b696b6bdb97b.rna_seq.genomic.gdc_realn.bam 9583938271 BAM genomic harmonized CPTAC3 1d72cd14-a769-4d61-a211-51be7b29445c 608773a7e0753cbfabbbb5b3c7c61161 { 'aliquot_tag': 'ALQ_cfb297f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03666.RNA-Seq.R1_L002.T C3N-03666 PDA RNA-Seq tumor CPT0246720009 190725_UNC32-K00270_0194_AH7HHFBBXY_TGCGGCGT-CCTCGGTA_S6_L002_R1_001.fastq.gz 3500155043 FASTQ R1_L002 unaligned CPTAC3 3c57a676-0929-41e7-990d-ebbaddcac4ac 6a5c08f98704bc684083bd042c09e1eb { 'aliquot_tag': 'ALQ_cfb297f7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03666.RNA-Seq.R2_L002.T C3N-03666 PDA RNA-Seq tumor CPT0246720009 190725_UNC32-K00270_0194_AH7HHFBBXY_TGCGGCGT-CCTCGGTA_S6_L002_R2_001.fastq.gz 3550554483 FASTQ R2_L002 unaligned CPTAC3 fdc0fe85-8190-465c-8fa0-e567516bbcb0 2d4bd8db25cefed54dc5d241d70a6fc3 { 'aliquot_tag': 'ALQ_cfb297f7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03666.RNA-Seq.R1_L002.T C3N-03666 PDA RNA-Seq tumor CPT0246720009 190725_UNC32-K00270_0194_AH7HHFBBXY_TGCGGCGT-CCTCGGTA_S6_L002_R1_001.fastq.gz 3500155043 FASTQ R1_L002 unaligned CPTAC3 3c57a676-0929-41e7-990d-ebbaddcac4ac 6a5c08f98704bc684083bd042c09e1eb { 'aliquot_tag': 'ALQ_cfb297f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03666.RNA-Seq.R2_L002.T C3N-03666 PDA RNA-Seq tumor CPT0246720009 190725_UNC32-K00270_0194_AH7HHFBBXY_TGCGGCGT-CCTCGGTA_S6_L002_R2_001.fastq.gz 3550554483 FASTQ R2_L002 unaligned CPTAC3 fdc0fe85-8190-465c-8fa0-e567516bbcb0 2d4bd8db25cefed54dc5d241d70a6fc3 { 'aliquot_tag': 'ALQ_cfb297f7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-03666.RNA-Seq.transcriptome.T.hg38 C3N-03666 PDA RNA-Seq tumor CPT0246720009 1662474e-d419-418d-942c-b696b6bdb97b.rna_seq.transcriptome.gdc_realn.bam 8585105528 BAM transcriptome harmonized CPTAC3 7bcb326d-3dd5-4a70-8d2c-a0969d87f52f 58823040e11f57d046c7599db8c7e53b { 'aliquot_tag': 'ALQ_cfb297f7', 'gdc_sample_type': 'Primary Tumor' } C3N-03666.WGS.N C3N-03666 PDA WGS blood_normal CPT0246740002 CPT0246740002.WholeGenome.RP-1303.bam 88931873947 BAM aligned CPTAC3 f392cacb-eb4c-43c1-a249-5c5ef52f9f35 b5190464e77ac1989a58568a9c9b74d8 { 'aliquot_tag': 'ALQ_d720bbdf', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03666.WGS.N.hg38 C3N-03666 PDA WGS blood_normal CPT0246740002 57b9c161-c170-4d92-b1e7-9aa2076a3620_wgs_gdc_realn.bam 131263793197 BAM harmonized CPTAC3 375a0b1a-aa78-4da8-b09e-fd6c0f11c2a2 36bc03488c1ddf11dd74534a52fa6d75 { 'aliquot_tag': 'ALQ_d720bbdf', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35878,9 +38225,9 @@ C3N-03670.MethArray.Red.T C3N-03670 PDA Methylation Array tumor CPT0246840006 20 C3N-03670.miRNA-Seq.T C3N-03670 PDA miRNA-Seq tumor CPT0246840013 190813_UNC32-K00270_0196_AH5MCWBBXY_CCGTCC_S45_L002_R1_001.unaln.bam 172881467 BAM unaligned CPTAC3 31ee2725-b9b6-46a6-871f-627b7f6e209b 416ad9ed9c23bd3e2b4299c0f9d53fc6 { 'aliquot_tag': 'ALQ_486a08dd', 'gdc_sample_type': 'Primary Tumor' } C3N-03670.miRNA-Seq.T.hg38 C3N-03670 PDA miRNA-Seq tumor CPT0246840013 31bed28f-8560-4e83-b187-c8446056d700_mirnaseq_gdc_realn.bam 196558200 BAM harmonized CPTAC3 537a274e-fad7-4b73-a7bc-c5c74c37f986 5bc52cc3912c17a39757bcbc716783e6 { 'aliquot_tag': 'ALQ_486a08dd', 'gdc_sample_type': 'Primary Tumor' } C3N-03670.RNA-Seq.chimeric.T.hg38 C3N-03670 PDA RNA-Seq tumor CPT0246840013 5a72b8a0-c606-408f-876a-27e192dac260.rna_seq.chimeric.gdc_realn.bam 307129724 BAM chimeric harmonized CPTAC3 6c87f9fb-5c26-47f3-8e50-9a70a736b75d ae251909a6b18a786cefea27ce61507d { 'aliquot_tag': 'ALQ_486a08dd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03670.RNA-Seq.genomic.T.hg38 C3N-03670 PDA RNA-Seq tumor CPT0246840013 5a72b8a0-c606-408f-876a-27e192dac260.rna_seq.genomic.gdc_realn.bam 10729266074 BAM genomic harmonized CPTAC3 296b30a6-3cab-44e0-9c62-e5e68c01c1e6 a128e2b7a79a618c09cb7dc4f6a82037 { 'aliquot_tag': 'ALQ_486a08dd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03670.RNA-Seq.R1_L005.T C3N-03670 PDA RNA-Seq tumor CPT0246840013 190717_UNC31-K00269_0233_BH7HG5BBXY_CCATTCGA-GTTGTCCG_S18_L005_R1_001.fastq.gz 4364268270 FASTQ R1_L005 unaligned CPTAC3 f7dbacf3-01dc-48c9-b9a2-87c26c8a7174 bdb5c850f56727d9dfda4bee6bca1826 { 'aliquot_tag': 'ALQ_486a08dd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03670.RNA-Seq.R2_L005.T C3N-03670 PDA RNA-Seq tumor CPT0246840013 190717_UNC31-K00269_0233_BH7HG5BBXY_CCATTCGA-GTTGTCCG_S18_L005_R2_001.fastq.gz 4521112708 FASTQ R2_L005 unaligned CPTAC3 e07b6519-b4db-4cb9-b73d-2e5779e5f8b8 83ec8534f530e9a50ebc588701a394c6 { 'aliquot_tag': 'ALQ_486a08dd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03670.RNA-Seq.genomic.T.hg38 C3N-03670 PDA RNA-Seq tumor CPT0246840013 5a72b8a0-c606-408f-876a-27e192dac260.rna_seq.genomic.gdc_realn.bam 10729266074 BAM genomic harmonized CPTAC3 d46b4236-1774-4536-99b2-a4eae25bdf20 a128e2b7a79a618c09cb7dc4f6a82037 { 'aliquot_tag': 'ALQ_486a08dd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03670.RNA-Seq.R1_L005.T C3N-03670 PDA RNA-Seq tumor CPT0246840013 190717_UNC31-K00269_0233_BH7HG5BBXY_CCATTCGA-GTTGTCCG_S18_L005_R1_001.fastq.gz 4364268270 FASTQ R1_L005 unaligned CPTAC3 f7dbacf3-01dc-48c9-b9a2-87c26c8a7174 bdb5c850f56727d9dfda4bee6bca1826 { 'aliquot_tag': 'ALQ_486a08dd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03670.RNA-Seq.R2_L005.T C3N-03670 PDA RNA-Seq tumor CPT0246840013 190717_UNC31-K00269_0233_BH7HG5BBXY_CCATTCGA-GTTGTCCG_S18_L005_R2_001.fastq.gz 4521112708 FASTQ R2_L005 unaligned CPTAC3 e07b6519-b4db-4cb9-b73d-2e5779e5f8b8 83ec8534f530e9a50ebc588701a394c6 { 'aliquot_tag': 'ALQ_486a08dd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-03670.RNA-Seq.transcriptome.T.hg38 C3N-03670 PDA RNA-Seq tumor CPT0246840013 5a72b8a0-c606-408f-876a-27e192dac260.rna_seq.transcriptome.gdc_realn.bam 10034474191 BAM transcriptome harmonized CPTAC3 2d6c2d0e-c31d-440f-85eb-1a5da3c71082 190d39f819b743234b47fe9865f02ffc { 'aliquot_tag': 'ALQ_486a08dd', 'gdc_sample_type': 'Primary Tumor' } C3N-03670.WGS.N C3N-03670 PDA WGS blood_normal CPT0246880002 CPT0246880002.WholeGenome.RP-1303.bam 64325394775 BAM aligned CPTAC3 0c9769de-17a6-4958-bbeb-73a5c567289d 165005776c1ad2858eb691ca4749ed05 { 'aliquot_tag': 'ALQ_e386e40b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03670.WGS.N.hg38 C3N-03670 PDA WGS blood_normal CPT0246880002 c23854b5-45f9-401f-a1b1-c0ac92ee4218_wgs_gdc_realn.bam 93012518314 BAM harmonized CPTAC3 d043299a-cfda-453b-856f-d1d1b9340163 857122b585ba786bb0f6e18deff64db5 { 'aliquot_tag': 'ALQ_e386e40b', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35897,9 +38244,9 @@ C3N-03754.MethArray.Red.T C3N-03754 PDA Methylation Array tumor CPT0246810006 20 C3N-03754.miRNA-Seq.T C3N-03754 PDA miRNA-Seq tumor CPT0246810013 190813_UNC32-K00270_0196_AH5MCWBBXY_ATGTCA_S44_L002_R1_001.unaln.bam 142850165 BAM unaligned CPTAC3 fea0f9a6-bb02-462d-ab92-259fa6940239 4d6f9fa4044b150ce7658631d2ba05c6 { 'aliquot_tag': 'ALQ_808a87ad', 'gdc_sample_type': 'Primary Tumor' } C3N-03754.miRNA-Seq.T.hg38 C3N-03754 PDA miRNA-Seq tumor CPT0246810013 79feb52c-1046-41ef-80f0-7f615c208bac_mirnaseq_gdc_realn.bam 159875379 BAM harmonized CPTAC3 24be9d9e-c424-42b6-b8b0-0d8cf21d75ce 58d4f46920a730e8ccc76072f1d1be81 { 'aliquot_tag': 'ALQ_808a87ad', 'gdc_sample_type': 'Primary Tumor' } C3N-03754.RNA-Seq.chimeric.T.hg38 C3N-03754 PDA RNA-Seq tumor CPT0246810013 a445b599-2aa0-4160-ba57-8355e176d063.rna_seq.chimeric.gdc_realn.bam 260918233 BAM chimeric harmonized CPTAC3 6a86fa71-9b3b-48b6-87a9-34478b586dfe c901836a8989589d7ea41bfbeab3f867 { 'aliquot_tag': 'ALQ_808a87ad', 'gdc_sample_type': 'Primary Tumor' } -C3N-03754.RNA-Seq.genomic.T.hg38 C3N-03754 PDA RNA-Seq tumor CPT0246810013 a445b599-2aa0-4160-ba57-8355e176d063.rna_seq.genomic.gdc_realn.bam 10074202536 BAM genomic harmonized CPTAC3 cfa67262-558a-4ba0-aa1f-1109585d3188 226c999f0fbe9dee1a0594e8754a016d { 'aliquot_tag': 'ALQ_808a87ad', 'gdc_sample_type': 'Primary Tumor' } -C3N-03754.RNA-Seq.R1_L005.T C3N-03754 PDA RNA-Seq tumor CPT0246810013 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGCCTAG-ACCACTTA_S16_L005_R1_001.fastq.gz 4015495748 FASTQ R1_L005 unaligned CPTAC3 29f82aea-74fc-4ecf-8fda-ef41bb9616ec a274019bd1515c9068707a2548295479 { 'aliquot_tag': 'ALQ_808a87ad', 'gdc_sample_type': 'Primary Tumor' } -C3N-03754.RNA-Seq.R2_L005.T C3N-03754 PDA RNA-Seq tumor CPT0246810013 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGCCTAG-ACCACTTA_S16_L005_R2_001.fastq.gz 4148066863 FASTQ R2_L005 unaligned CPTAC3 9cd965aa-d307-403c-87ba-f695cabbaf9a 43796513dd1bdd6e06d8d02904cc52fd { 'aliquot_tag': 'ALQ_808a87ad', 'gdc_sample_type': 'Primary Tumor' } +C3N-03754.RNA-Seq.genomic.T.hg38 C3N-03754 PDA RNA-Seq tumor CPT0246810013 a445b599-2aa0-4160-ba57-8355e176d063.rna_seq.genomic.gdc_realn.bam 10074202536 BAM genomic harmonized CPTAC3 bc5bb2e5-a1ef-42a0-834c-dbfd24050815 226c999f0fbe9dee1a0594e8754a016d { 'aliquot_tag': 'ALQ_808a87ad', 'gdc_sample_type': 'Primary Tumor' } +C3N-03754.RNA-Seq.R1_L005.T C3N-03754 PDA RNA-Seq tumor CPT0246810013 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGCCTAG-ACCACTTA_S16_L005_R1_001.fastq.gz 4015495748 FASTQ R1_L005 unaligned CPTAC3 29f82aea-74fc-4ecf-8fda-ef41bb9616ec a274019bd1515c9068707a2548295479 { 'aliquot_tag': 'ALQ_808a87ad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03754.RNA-Seq.R2_L005.T C3N-03754 PDA RNA-Seq tumor CPT0246810013 190717_UNC31-K00269_0233_BH7HG5BBXY_TTGCCTAG-ACCACTTA_S16_L005_R2_001.fastq.gz 4148066863 FASTQ R2_L005 unaligned CPTAC3 9cd965aa-d307-403c-87ba-f695cabbaf9a 43796513dd1bdd6e06d8d02904cc52fd { 'aliquot_tag': 'ALQ_808a87ad', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-03754.RNA-Seq.transcriptome.T.hg38 C3N-03754 PDA RNA-Seq tumor CPT0246810013 a445b599-2aa0-4160-ba57-8355e176d063.rna_seq.transcriptome.gdc_realn.bam 9943714621 BAM transcriptome harmonized CPTAC3 8315b446-7653-48fd-bcca-9a2328b43354 e8669e6e964bac490c384235c1e79823 { 'aliquot_tag': 'ALQ_808a87ad', 'gdc_sample_type': 'Primary Tumor' } C3N-03754.WGS.N C3N-03754 PDA WGS blood_normal CPT0246830002 CPT0246830002.WholeGenome.RP-1303.bam 70034050100 BAM aligned CPTAC3 9b4f5b14-f971-44ec-adcf-225ec70c6046 202f78643db911fe26d6c03ae8e59ce4 { 'aliquot_tag': 'ALQ_9456d51a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03754.WGS.N.hg38 C3N-03754 PDA WGS blood_normal CPT0246830002 0b6cef8c-b642-4576-bb89-8a8a534064b7_wgs_gdc_realn.bam 101906454360 BAM harmonized CPTAC3 4de225d4-005b-4c18-9132-a4e1c5106a50 78afabd226990c705ff62c0bd8039653 { 'aliquot_tag': 'ALQ_9456d51a', 'gdc_sample_type': 'Blood Derived Normal' } @@ -35913,11 +38260,11 @@ C3N-03755.MethArray.Green.T C3N-03755 GBM Methylation Array tumor CPT0248080006 C3N-03755.MethArray.Red.T C3N-03755 GBM Methylation Array tumor CPT0248080006 204367490090_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 23877301-42b9-48b0-bd53-ac21f17fff1a 6c4d2209470cdb4c62797a7e93faed50 { 'aliquot_tag': 'ALQ_5887d922', 'gdc_sample_type': 'Primary Tumor' } C3N-03755.miRNA-Seq.T C3N-03755 GBM miRNA-Seq tumor CPT0248080009 200403_UNC31-K00269_0274_AHCF7GBBXY_ACTTGA_S32_L002_R1_001.unaln.bam 205351927 BAM unaligned CPTAC3 800060ad-d37e-49bd-82c9-99afe8462146 13ede4f16546d4b233b5f1a4e9d23d28 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor' } C3N-03755.miRNA-Seq.T.hg38 C3N-03755 GBM miRNA-Seq tumor CPT0248080009 05fdecb5-b154-4c51-be6a-4ab26d0ef0ac_mirnaseq_gdc_realn.bam 227839068 BAM harmonized CPTAC3 34fe4f31-bd59-4ee0-b450-71b440bb2c5f 64e124fe00583634e650afaf98f60848 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03755.RNA-Seq.chimeric.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 b6755e19-dda2-42e0-8a39-9fcb35b50e5b.rna_seq.chimeric.gdc_realn.bam 178360912 BAM chimeric harmonized CPTAC3 3d6dafaf-0981-41ba-ae48-cad2ecaf9c45 6cf9b9f9d19a8a81960e41132e32e7e3 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03755.RNA-Seq.genomic.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 b6755e19-dda2-42e0-8a39-9fcb35b50e5b.rna_seq.genomic.gdc_realn.bam 8050677390 BAM genomic harmonized CPTAC3 019bf36b-ebdf-4331-9dff-1e8db6e7fc7f 7fd4ac629de8d0cb80bdc33bf34efb4d { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03755.RNA-Seq.R1_L008.T C3N-03755 GBM RNA-Seq tumor CPT0248080009 200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R1_001.fastq.gz 3404251189 FASTQ R1_L008 unaligned CPTAC3 b845241e-88cb-4f0c-9247-637536d1a2af 4facde3709a6078e7ace78543bf766d0 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03755.RNA-Seq.R2_L008.T C3N-03755 GBM RNA-Seq tumor CPT0248080009 200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R2_001.fastq.gz 3855275179 FASTQ R2_L008 unaligned CPTAC3 76548cbb-338c-4415-83dd-81b50d9ec658 c0a4204b5e54bd6c5c696decee768a27 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03755.RNA-Seq.transcriptome.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 b6755e19-dda2-42e0-8a39-9fcb35b50e5b.rna_seq.transcriptome.gdc_realn.bam 8086689737 BAM transcriptome harmonized CPTAC3 3f45228e-bda2-433a-8d0a-2022f1680c80 abd42e79375c67e23a9891f2f078a120 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03755.RNA-Seq.chimeric.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 fb35a846-ba5d-42e3-9465-b6acb4e724ce.rna_seq.chimeric.gdc_realn.bam 178324940 BAM chimeric harmonized CPTAC3 8fc4dcc1-ea4b-4c6b-928d-37f903075a37 ab0e4caf99666ce2ed1de6dd54e75bb9 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03755.RNA-Seq.genomic.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 fb35a846-ba5d-42e3-9465-b6acb4e724ce.rna_seq.genomic.gdc_realn.bam 8051490711 BAM genomic harmonized CPTAC3 00a5fa0d-04ad-4c99-93ea-64804e60c5cf 8200d8863df85d4e686b03f1d3fdef75 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03755.RNA-Seq.R1_L008.T C3N-03755 GBM RNA-Seq tumor CPT0248080009 200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R1_001.fastq.gz 3404251189 FASTQ R1_L008 unaligned CPTAC3 b845241e-88cb-4f0c-9247-637536d1a2af 4facde3709a6078e7ace78543bf766d0 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03755.RNA-Seq.R2_L008.T C3N-03755 GBM RNA-Seq tumor CPT0248080009 200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R2_001.fastq.gz 3855275179 FASTQ R2_L008 unaligned CPTAC3 76548cbb-338c-4415-83dd-81b50d9ec658 c0a4204b5e54bd6c5c696decee768a27 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03755.RNA-Seq.transcriptome.T.hg38 C3N-03755 GBM RNA-Seq tumor CPT0248080009 fb35a846-ba5d-42e3-9465-b6acb4e724ce.rna_seq.transcriptome.gdc_realn.bam 9191232631 BAM transcriptome harmonized CPTAC3 2de08e61-a2f8-4427-bd5c-b851083ee6e8 6add89307bc6b4846f1c80686a4664b9 { 'aliquot_tag': 'ALQ_c838c4b3', 'gdc_sample_type': 'Primary Tumor' } C3N-03755.WGS.N C3N-03755 GBM WGS blood_normal CPT0248100002 CPT0248100002.WholeGenome.RP-2158.bam 22211557499 BAM aligned CPTAC3 e29350af-b032-4737-bb26-93bc812e18e9 5605784aebae86d2ea2b381aa5600bb9 { 'aliquot_tag': 'ALQ_a4c6855f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03755.WGS.N.hg38 C3N-03755 GBM WGS blood_normal CPT0248100002 50fce217-0cc7-4115-8100-8251b2e1dbe8_wgs_gdc_realn.bam 66609631094 BAM harmonized CPTAC3 dbdb5f5a-a6ce-4299-9a44-e0ea85c470a6 5883ee296ed86131d4af56ac4beb6232 { 'aliquot_tag': 'ALQ_a4c6855f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03755.WGS.T C3N-03755 GBM WGS tumor CPT0248080006 CPT0248080006.WholeGenome.RP-2158.bam 25993185932 BAM aligned CPTAC3 5ab180dc-d608-4f96-8b61-02cda9280ef7 dbf71b95b8ec11bf91fa650e6676d544 { 'aliquot_tag': 'ALQ_5887d922', 'gdc_sample_type': 'Primary Tumor' } @@ -35930,11 +38277,11 @@ C3N-03756.MethArray.Green.T C3N-03756 GBM Methylation Array tumor CPT0248110006 C3N-03756.MethArray.Red.T C3N-03756 GBM Methylation Array tumor CPT0248110006 204367460011_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 848db9be-9afd-4aa2-973b-76f9b61082cf 0e1c87ae1b048426f226420e0e475ef7 { 'aliquot_tag': 'ALQ_9ecb68f6', 'gdc_sample_type': 'Primary Tumor' } C3N-03756.miRNA-Seq.T C3N-03756 GBM miRNA-Seq tumor CPT0248110009 200403_UNC31-K00269_0274_AHCF7GBBXY_GATCAG_S33_L002_R1_001.unaln.bam 177102291 BAM unaligned CPTAC3 410550af-6a72-4a8b-8ffc-d101ef5458ba 9320443e61b220f6b3f1afae72eeb3c9 { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor' } C3N-03756.miRNA-Seq.T.hg38 C3N-03756 GBM miRNA-Seq tumor CPT0248110009 2e4b0676-8a92-47e5-8e9a-8bef3b29fccd_mirnaseq_gdc_realn.bam 199862148 BAM harmonized CPTAC3 33bbf501-79d7-4b50-8df8-8c8ce30d0aca a1c120077ffdcf962a6027dbab7c535f { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor' } -C3N-03756.RNA-Seq.chimeric.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 f46180a6-2ec1-443b-88b4-a22e621c088f.rna_seq.chimeric.gdc_realn.bam 294061153 BAM chimeric harmonized CPTAC3 3fc68491-017f-42fb-919d-ce8ea7e29bc8 655ea9c6e741cefa49f5ab3a74f2186b { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor' } -C3N-03756.RNA-Seq.genomic.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 f46180a6-2ec1-443b-88b4-a22e621c088f.rna_seq.genomic.gdc_realn.bam 8992693465 BAM genomic harmonized CPTAC3 0fa14dd0-05dc-46b2-8eac-18b6ebb4cc66 5617c1bf97f47456612d8ae7e72e5316 { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor' } -C3N-03756.RNA-Seq.R1_L003.T C3N-03756 GBM RNA-Seq tumor CPT0248110009 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R1_001.fastq.gz 3540889062 FASTQ R1_L003 unaligned CPTAC3 e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50 35aa2d5983f4681549daf407deedb456 { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor' } -C3N-03756.RNA-Seq.R2_L003.T C3N-03756 GBM RNA-Seq tumor CPT0248110009 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R2_001.fastq.gz 4271619467 FASTQ R2_L003 unaligned CPTAC3 d5a6f477-3888-416d-bbe8-c6110091e40e 7b582c55da00b403970b29128324978c { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor' } -C3N-03756.RNA-Seq.transcriptome.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 f46180a6-2ec1-443b-88b4-a22e621c088f.rna_seq.transcriptome.gdc_realn.bam 7444896110 BAM transcriptome harmonized CPTAC3 d17846ea-7eda-496f-831c-aea2870ff75a 36da4c692a9a6f8023fadb5f06561848 { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor' } +C3N-03756.RNA-Seq.chimeric.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 ec62970a-b36f-4924-b508-af1903c66383.rna_seq.chimeric.gdc_realn.bam 294029170 BAM chimeric harmonized CPTAC3 83aadae9-ad4c-4c4f-82e3-9e11f40c531c c58bb446631651895a43eb04d5c9996f { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor' } +C3N-03756.RNA-Seq.genomic.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 ec62970a-b36f-4924-b508-af1903c66383.rna_seq.genomic.gdc_realn.bam 8993512795 BAM genomic harmonized CPTAC3 0496cb54-800a-494e-9876-3db71357579c 7cbba67516b08d0a0df734434a47b937 { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor' } +C3N-03756.RNA-Seq.R1_L003.T C3N-03756 GBM RNA-Seq tumor CPT0248110009 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R1_001.fastq.gz 3540889062 FASTQ R1_L003 unaligned CPTAC3 e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50 35aa2d5983f4681549daf407deedb456 { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03756.RNA-Seq.R2_L003.T C3N-03756 GBM RNA-Seq tumor CPT0248110009 200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R2_001.fastq.gz 4271619467 FASTQ R2_L003 unaligned CPTAC3 d5a6f477-3888-416d-bbe8-c6110091e40e 7b582c55da00b403970b29128324978c { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-03756.RNA-Seq.transcriptome.T.hg38 C3N-03756 GBM RNA-Seq tumor CPT0248110009 ec62970a-b36f-4924-b508-af1903c66383.rna_seq.transcriptome.gdc_realn.bam 8386071195 BAM transcriptome harmonized CPTAC3 1e308929-74c6-4f57-a6ba-f9d8b8be54d3 ff8160b88b5c62ee03a7e3420121d9a5 { 'aliquot_tag': 'ALQ_e747567', 'gdc_sample_type': 'Primary Tumor' } C3N-03756.WGS.N C3N-03756 GBM WGS blood_normal CPT0248150002 CPT0248150002.WholeGenome.RP-2158.bam 21131293979 BAM aligned CPTAC3 1cd96b5e-db11-4c2d-a9b2-d768a15a1cdb 4dc37405ba4c2e374fbc5269d2f20d53 { 'aliquot_tag': 'ALQ_6c260a2f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03756.WGS.N.hg38 C3N-03756 GBM WGS blood_normal CPT0248150002 66e454ec-e406-4636-ac39-6f866a915a54_wgs_gdc_realn.bam 62889344302 BAM harmonized CPTAC3 e7091cde-15c0-427a-ab8c-f4260501dd7d 8489814decfa6167c8954159f5e422f2 { 'aliquot_tag': 'ALQ_6c260a2f', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03756.WGS.T C3N-03756 GBM WGS tumor CPT0248110006 CPT0248110006.WholeGenome.RP-2158.bam 26962179175 BAM aligned CPTAC3 3ef22001-f398-4ea5-8f12-ee2e72f00c6d 12b0cda91ea1307d25d984d8ee465db9 { 'aliquot_tag': 'ALQ_9ecb68f6', 'gdc_sample_type': 'Primary Tumor' } @@ -35947,11 +38294,11 @@ C3N-03757.MethArray.Green.T C3N-03757 GBM Methylation Array tumor CPT0248040006 C3N-03757.MethArray.Red.T C3N-03757 GBM Methylation Array tumor CPT0248040006 204367470127_R03C01_Red.idat 13677890 IDAT Red NA CPTAC3 221b8a7f-9dd8-4267-9507-71f710d09832 68ad245cdeb70a1eb4ca4e33434fd503 { 'aliquot_tag': 'ALQ_9d773423', 'gdc_sample_type': 'Primary Tumor' } C3N-03757.miRNA-Seq.T C3N-03757 GBM miRNA-Seq tumor CPT0248040009 200403_UNC31-K00269_0274_AHCF7GBBXY_CAGATC_S31_L002_R1_001.unaln.bam 223881370 BAM unaligned CPTAC3 0e40ba4c-ff44-476b-90d5-1b994bcb16be 174e2b21c1b0a33102b94fa231f9297e { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor' } C3N-03757.miRNA-Seq.T.hg38 C3N-03757 GBM miRNA-Seq tumor CPT0248040009 cd63d63e-0b6e-4e86-96bc-f5168390c5e4_mirnaseq_gdc_realn.bam 248543913 BAM harmonized CPTAC3 5eaa3845-65e0-4267-a04f-2514b3166463 2b51fae08dba9ac803337fb0c8ef4c0f { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor' } -C3N-03757.RNA-Seq.chimeric.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 3d633190-310d-43e9-b678-cb1910f0de71.rna_seq.chimeric.gdc_realn.bam 200743643 BAM chimeric harmonized CPTAC3 8c4131ab-6172-4b80-941e-8f05cab61b88 a7dd619298065347ca981f08f9c75597 { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor' } -C3N-03757.RNA-Seq.genomic.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 3d633190-310d-43e9-b678-cb1910f0de71.rna_seq.genomic.gdc_realn.bam 12105003297 BAM genomic harmonized CPTAC3 f81738e9-199a-4b10-86bb-3cca538cb012 71e7019153726e668ce63b2b7fe7946d { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor' } -C3N-03757.RNA-Seq.R1_L006.T C3N-03757 GBM RNA-Seq tumor CPT0248040009 200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R1_001.fastq.gz 5283446961 FASTQ R1_L006 unaligned CPTAC3 4a00f13f-802b-479a-9c10-208b3158248a 8e10728c639d1fad5884770ad5fb33d9 { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor' } -C3N-03757.RNA-Seq.R2_L006.T C3N-03757 GBM RNA-Seq tumor CPT0248040009 200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R2_001.fastq.gz 5903094218 FASTQ R2_L006 unaligned CPTAC3 973c3d9c-0686-4288-a83d-725e7d2d0488 d9c65c130c0f72548cbd93bf5f9c029d { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor' } -C3N-03757.RNA-Seq.transcriptome.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 3d633190-310d-43e9-b678-cb1910f0de71.rna_seq.transcriptome.gdc_realn.bam 13111529623 BAM transcriptome harmonized CPTAC3 a765f62e-8240-47b0-ae16-51f6c765bfde fd4c485730f3c4f38c169ccfc6d88b0f { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor' } +C3N-03757.RNA-Seq.chimeric.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 24c3cadc-355f-43b7-a8a3-d8b5b1c3fe30.rna_seq.chimeric.gdc_realn.bam 200720575 BAM chimeric harmonized CPTAC3 59b5f03d-128e-4ec7-b677-b113888faef9 eb3edec934b324159884ea1821df1072 { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor' } +C3N-03757.RNA-Seq.genomic.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 24c3cadc-355f-43b7-a8a3-d8b5b1c3fe30.rna_seq.genomic.gdc_realn.bam 12106412003 BAM genomic harmonized CPTAC3 4788415e-9a6a-4ea2-b7c3-5d6d312fbbbd 3205972a5acf5eb62f55d1fd75edfecb { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor' } +C3N-03757.RNA-Seq.R1_L006.T C3N-03757 GBM RNA-Seq tumor CPT0248040009 200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R1_001.fastq.gz 5283446961 FASTQ R1_L006 unaligned CPTAC3 4a00f13f-802b-479a-9c10-208b3158248a 8e10728c639d1fad5884770ad5fb33d9 { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03757.RNA-Seq.R2_L006.T C3N-03757 GBM RNA-Seq tumor CPT0248040009 200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R2_001.fastq.gz 5903094218 FASTQ R2_L006 unaligned CPTAC3 973c3d9c-0686-4288-a83d-725e7d2d0488 d9c65c130c0f72548cbd93bf5f9c029d { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-03757.RNA-Seq.transcriptome.T.hg38 C3N-03757 GBM RNA-Seq tumor CPT0248040009 24c3cadc-355f-43b7-a8a3-d8b5b1c3fe30.rna_seq.transcriptome.gdc_realn.bam 14832133507 BAM transcriptome harmonized CPTAC3 50dbacaa-8163-4763-b133-a0140858adb0 f9d82da8d306880adba851c9d783e5f1 { 'aliquot_tag': 'ALQ_dc829b2', 'gdc_sample_type': 'Primary Tumor' } C3N-03757.WGS.N C3N-03757 GBM WGS blood_normal CPT0248070002 CPT0248070002.WholeGenome.RP-2158.bam 24748606890 BAM aligned CPTAC3 bcc3251e-5b36-4ca6-bac9-212dd4dd5d9a 2a0748c11f3db41deb1d479a6f903e0f { 'aliquot_tag': 'ALQ_ddba8aea', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03757.WGS.N.hg38 C3N-03757 GBM WGS blood_normal CPT0248070002 8d894511-5d1c-4e1d-9276-2652042bb730_wgs_gdc_realn.bam 74844179183 BAM harmonized CPTAC3 8bbe506e-60c3-4df6-af3d-f7713d49b0dc 57f11f8c6528f5b1bdfc812ee89bb361 { 'aliquot_tag': 'ALQ_ddba8aea', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03757.WGS.T C3N-03757 GBM WGS tumor CPT0248040006 CPT0248040006.WholeGenome.RP-2158.bam 21315382528 BAM aligned CPTAC3 412452bc-414e-4ffc-aa7b-af95b5e0dabc 70eb73fe2a7599529b2ec7bdb9434d27 { 'aliquot_tag': 'ALQ_9d773423', 'gdc_sample_type': 'Primary Tumor' } @@ -35968,16 +38315,16 @@ C3N-03762.miRNA-Seq.A C3N-03762 LSCC miRNA-Seq tissue_normal CPT0247250009 20032 C3N-03762.miRNA-Seq.A.hg38 C3N-03762 LSCC miRNA-Seq tissue_normal CPT0247250009 9cb853a3-c3af-46cb-bcf1-84962b366419_mirnaseq_gdc_realn.bam 357051636 BAM harmonized CPTAC3 5cb067e1-3d7f-47a6-b5d3-ac4444c83c40 6bb9abe7d6dd9ce932dce129c0495377 { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03762.miRNA-Seq.T C3N-03762 LSCC miRNA-Seq tumor CPT0247240009 200224_UNC31-K00269_0267_AHC722BBXY_ACAGTG_S5_L008_R1_001.unaln.bam 256720337 BAM unaligned CPTAC3 f5b5c460-b34c-4c0d-8783-ccf4e3ad6bba 33f7a6d0752596f921d1ee6553453748 { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor' } C3N-03762.miRNA-Seq.T.hg38 C3N-03762 LSCC miRNA-Seq tumor CPT0247240009 851089c1-577f-446d-83fd-df501d1f89d7_mirnaseq_gdc_realn.bam 283692596 BAM harmonized CPTAC3 d7c7db8d-2148-41ea-a277-d45cebb56298 6df4c42f38ce1568826171d81b721c43 { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor' } -C3N-03762.RNA-Seq.chimeric.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 4b62639d-cc68-48ad-b53d-b1a251b462cc.rna_seq.chimeric.gdc_realn.bam 88611365 BAM chimeric harmonized CPTAC3 57fb85ca-5697-4f5a-8f08-93087ce8490e 89a885dd73a9315fe843ada19a0e798a { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03762.RNA-Seq.chimeric.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 fad360c3-c9bb-4867-8e12-83a7c967b398.rna_seq.chimeric.gdc_realn.bam 28255749 BAM chimeric harmonized CPTAC3 dea63481-644b-4f36-ba13-d6df99cd21ea 9f80cdfb7f9944e7a7c4d4eb9f28fc26 { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor' } -C3N-03762.RNA-Seq.genomic.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 4b62639d-cc68-48ad-b53d-b1a251b462cc.rna_seq.genomic.gdc_realn.bam 8307494074 BAM genomic harmonized CPTAC3 c3c3ba2b-0052-49f5-8b55-dae8a8d0a54f 47cdfb0c5875a8621b035c005b47deba { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03762.RNA-Seq.genomic.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 fad360c3-c9bb-4867-8e12-83a7c967b398.rna_seq.genomic.gdc_realn.bam 6864466275 BAM genomic harmonized CPTAC3 cac6fc6e-22d0-4dab-b1d2-e17846410945 550a2f50d8af0aa65fb7ade08b6b7d43 { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor' } -C3N-03762.RNA-Seq.R1_L002.T C3N-03762 LSCC RNA-Seq tumor CPT0247240009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L002_R1_001.fastq.gz 3340458440 FASTQ R1_L002 unaligned CPTAC3 eedce802-aab1-49aa-9611-c3a4f3b214b7 51b51b9bf5e15ece7db6b66efaf4c99b { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor' } -C3N-03762.RNA-Seq.R1_L004.A C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACAGGCGC-CTCTGCCT_S15_L004_R1_001.fastq.gz 4073473721 FASTQ R1_L004 unaligned CPTAC3 2d8aace6-dfbe-405a-a72d-0e7aad158a73 9e91b5ca4abf9c34a9df1216eb622ae4 { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03762.RNA-Seq.R2_L002.T C3N-03762 LSCC RNA-Seq tumor CPT0247240009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L002_R2_001.fastq.gz 3596102940 FASTQ R2_L002 unaligned CPTAC3 60ece175-202c-4e59-bab5-3acbc69cc22d 3bb00cef5a52ef615aadcee48ed97303 { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor' } -C3N-03762.RNA-Seq.R2_L004.A C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACAGGCGC-CTCTGCCT_S15_L004_R2_001.fastq.gz 4341685544 FASTQ R2_L004 unaligned CPTAC3 1c6eaab0-e5b4-43e4-92c0-cc63d9ea92e8 e548606f23b2c83bbff8e1177d6d3682 { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03762.RNA-Seq.transcriptome.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 4b62639d-cc68-48ad-b53d-b1a251b462cc.rna_seq.transcriptome.gdc_realn.bam 10131984104 BAM transcriptome harmonized CPTAC3 70f33ba7-5cbd-4e6d-9b3e-342bcb69e36f d4e35852e7d2844e33f15495a500edee { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03762.RNA-Seq.transcriptome.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 fad360c3-c9bb-4867-8e12-83a7c967b398.rna_seq.transcriptome.gdc_realn.bam 8712893421 BAM transcriptome harmonized CPTAC3 7382a011-8554-4d5e-8c3e-ef70c285ae1e 79d831cf31629979ec96913da0412c4c { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor' } +C3N-03762.RNA-Seq.chimeric.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 02abdde1-1d66-4d33-ab8a-889b5b4cf263.rna_seq.chimeric.gdc_realn.bam 88593336 BAM chimeric harmonized CPTAC3 3ffa01bd-d800-4ece-9384-973d5a0afa65 05e63cda5a0b63ab52c53afc00145a67 { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03762.RNA-Seq.chimeric.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 d7855c6a-f5a6-45c1-9091-ca0fe503f5de.rna_seq.chimeric.gdc_realn.bam 28277960 BAM chimeric harmonized CPTAC3 c75e6109-652e-40e7-89eb-eb21748c40d0 2bed1aa72de457c8fb421e4edd4e2f20 { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor' } +C3N-03762.RNA-Seq.genomic.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 02abdde1-1d66-4d33-ab8a-889b5b4cf263.rna_seq.genomic.gdc_realn.bam 8311813636 BAM genomic harmonized CPTAC3 860bf7af-4d99-465d-ad25-d25d50fcb432 51cbe81ca65c38409e2b5dfc7b6c58b5 { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03762.RNA-Seq.genomic.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 d7855c6a-f5a6-45c1-9091-ca0fe503f5de.rna_seq.genomic.gdc_realn.bam 6867389783 BAM genomic harmonized CPTAC3 fb08abb0-0ef7-4d7e-92f4-60ca768872f6 86dd1037de530e73b2c1f58ed2ba67dd { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor' } +C3N-03762.RNA-Seq.R1_L002.T C3N-03762 LSCC RNA-Seq tumor CPT0247240009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L002_R1_001.fastq.gz 3340458440 FASTQ R1_L002 unaligned CPTAC3 eedce802-aab1-49aa-9611-c3a4f3b214b7 51b51b9bf5e15ece7db6b66efaf4c99b { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03762.RNA-Seq.R1_L004.A C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACAGGCGC-CTCTGCCT_S15_L004_R1_001.fastq.gz 4073473721 FASTQ R1_L004 unaligned CPTAC3 2d8aace6-dfbe-405a-a72d-0e7aad158a73 9e91b5ca4abf9c34a9df1216eb622ae4 { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03762.RNA-Seq.R2_L002.T C3N-03762 LSCC RNA-Seq tumor CPT0247240009 200505_UNC32-K00270_0245_AHH5FVBBXY_ATCCACTG-AGGTGCGT_S5_L002_R2_001.fastq.gz 3596102940 FASTQ R2_L002 unaligned CPTAC3 60ece175-202c-4e59-bab5-3acbc69cc22d 3bb00cef5a52ef615aadcee48ed97303 { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03762.RNA-Seq.R2_L004.A C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 200428_UNC31-K00269_0275_AHGCJVBBXY_ACAGGCGC-CTCTGCCT_S15_L004_R2_001.fastq.gz 4341685544 FASTQ R2_L004 unaligned CPTAC3 1c6eaab0-e5b4-43e4-92c0-cc63d9ea92e8 e548606f23b2c83bbff8e1177d6d3682 { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-03762.RNA-Seq.transcriptome.A.hg38 C3N-03762 LSCC RNA-Seq tissue_normal CPT0247250009 02abdde1-1d66-4d33-ab8a-889b5b4cf263.rna_seq.transcriptome.gdc_realn.bam 11281568734 BAM transcriptome harmonized CPTAC3 c6ba9e81-6cd7-4a9f-89fb-da13b5c5e69f dad417b4f0dd81123ce5c1849d243eb3 { 'aliquot_tag': 'ALQ_8b28d1e0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03762.RNA-Seq.transcriptome.T.hg38 C3N-03762 LSCC RNA-Seq tumor CPT0247240009 d7855c6a-f5a6-45c1-9091-ca0fe503f5de.rna_seq.transcriptome.gdc_realn.bam 9651716509 BAM transcriptome harmonized CPTAC3 6ca8a5c1-16ed-42f2-9f5b-e846b2c67df2 77421ca846fad762d2c3f763c22e6bbb { 'aliquot_tag': 'ALQ_b648f850', 'gdc_sample_type': 'Primary Tumor' } C3N-03762.WGS.N C3N-03762 LSCC WGS blood_normal CPT0247280008 CPT0247280008.WholeGenome.RP-2158.bam 24860619632 BAM aligned CPTAC3 85fcd93a-688b-402c-8e14-9217d80e090a 217703e1535fa4de4337728271e998c8 { 'aliquot_tag': 'ALQ_4bf25c7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03762.WGS.N.hg38 C3N-03762 LSCC WGS blood_normal CPT0247280008 f8c7c04c-bf1e-4a8c-9d49-d43de0279a39_wgs_gdc_realn.bam 75682384584 BAM harmonized CPTAC3 83a064b6-a934-408d-93ee-ab41545c75c5 77b00fa54e38d16c99d2d5609a8c5952 { 'aliquot_tag': 'ALQ_4bf25c7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03762.WGS.T C3N-03762 LSCC WGS tumor CPT0247240006 CPT0247240006.WholeGenome.RP-2158.bam 22764221099 BAM aligned CPTAC3 32fd25df-344a-464d-8c7c-0bafe85055ec 0257f8fa5c697a3bec7e5f7a907328e4 { 'aliquot_tag': 'ALQ_26f7e5c1', 'gdc_sample_type': 'Primary Tumor' } @@ -35996,16 +38343,16 @@ C3N-03764.miRNA-Seq.A C3N-03764 LUAD miRNA-Seq tissue_normal CPT0246040009 19071 C3N-03764.miRNA-Seq.A.hg38 C3N-03764 LUAD miRNA-Seq tissue_normal CPT0246040009 1bde88c1-2ed0-4142-be07-0ba40d2948a0_mirnaseq_gdc_realn.bam 254516986 BAM harmonized CPTAC3 05779cdd-24fb-4287-89b5-7b18873fb688 839bbedc677823dd8017daff8cae77a0 { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03764.miRNA-Seq.T C3N-03764 LUAD miRNA-Seq tumor CPT0246030009 190828_UNC32-K00270_0200_BH7GVJBBXY_TCATTC_S146_L007_R1_001.unaln.bam 180554577 BAM unaligned CPTAC3 296ffecd-04d0-4c8f-bd1f-4c001ed1e90c 8bd5ebc2a275f989a777713528f705e3 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor' } C3N-03764.miRNA-Seq.T.hg38 C3N-03764 LUAD miRNA-Seq tumor CPT0246030009 0e59d975-0e9f-4064-9998-859c218462c3_mirnaseq_gdc_realn.bam 199331989 BAM harmonized CPTAC3 8cb50e62-8920-4b1a-9b7c-e1e25d2d8768 9cf26072ad97851d3ade8e70abce9ffa { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor' } -C3N-03764.RNA-Seq.chimeric.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 36472f63-8ee7-48e2-822c-c201e14ccb72.rna_seq.chimeric.gdc_realn.bam 36125566 BAM chimeric harmonized CPTAC3 b8a71115-e557-4a47-bff6-a95a780a955c 5a55c4137d3f2628487ac9aa29df2c92 { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03764.RNA-Seq.chimeric.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 c0f530e7-f9ff-4c47-a140-d410ce6357d8.rna_seq.chimeric.gdc_realn.bam 20872378 BAM chimeric harmonized CPTAC3 fd98c506-3192-444a-8824-f00c98e263a6 47527b74371dd2ae9a73f2fa7a6750a9 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor' } -C3N-03764.RNA-Seq.genomic.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 36472f63-8ee7-48e2-822c-c201e14ccb72.rna_seq.genomic.gdc_realn.bam 7781861051 BAM genomic harmonized CPTAC3 54c21196-5214-4919-97fc-27dbac91b4a7 11a43e52207eca2702576b1b33e309e8 { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03764.RNA-Seq.genomic.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 c0f530e7-f9ff-4c47-a140-d410ce6357d8.rna_seq.genomic.gdc_realn.bam 12644131143 BAM genomic harmonized CPTAC3 6f13266c-f67c-4996-8ea5-a415441f416b 700c5d3229769aa164c35dbaf52a9c72 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor' } -C3N-03764.RNA-Seq.R1_L001.A C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCACGGAC-GTCTCGCA_S3_L001_R1_001.fastq.gz 3030574716 FASTQ R1_L001 unaligned CPTAC3 746c6586-5eee-4009-9f7b-ad0ecbc3d7e1 cef42e7ab7bd0b473aaf6ca58bbe0d12 { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03764.RNA-Seq.R1_L003.T C3N-03764 LUAD RNA-Seq tumor CPT0246030009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATGGCATG-AAGGTACC_S10_L003_R1_001.fastq.gz 3318022252 FASTQ R1_L003 unaligned CPTAC3 91751b20-d366-4f86-b744-0d697d0a38db 78f822294c5fc4973c8385dd4efda317 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor' } -C3N-03764.RNA-Seq.R2_L001.A C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCACGGAC-GTCTCGCA_S3_L001_R2_001.fastq.gz 3628983578 FASTQ R2_L001 unaligned CPTAC3 eb8206f8-4a64-4e92-96b2-820c0be176f9 25eab66c63138702d6710b163ef1e5ab { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03764.RNA-Seq.R2_L003.T C3N-03764 LUAD RNA-Seq tumor CPT0246030009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATGGCATG-AAGGTACC_S10_L003_R2_001.fastq.gz 3789747377 FASTQ R2_L003 unaligned CPTAC3 19321d88-2e65-4487-8543-35536d48bd3b c7717afba1122648fe40402fd8112d64 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor' } -C3N-03764.RNA-Seq.transcriptome.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 36472f63-8ee7-48e2-822c-c201e14ccb72.rna_seq.transcriptome.gdc_realn.bam 7044375794 BAM transcriptome harmonized CPTAC3 8fe4030a-ae64-47b3-a7c3-917e558b0c56 d79ae7237266d1f9fcd7b0d5028d9faf { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03764.RNA-Seq.transcriptome.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 c0f530e7-f9ff-4c47-a140-d410ce6357d8.rna_seq.transcriptome.gdc_realn.bam 7734139398 BAM transcriptome harmonized CPTAC3 63ee9954-12d8-48ff-a0c4-fc308992bc43 60f98740d96cb314f720401cd8cc6771 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor' } +C3N-03764.RNA-Seq.chimeric.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 6a7c7dd7-ba60-4968-8c25-2708b3936348.rna_seq.chimeric.gdc_realn.bam 36114609 BAM chimeric harmonized CPTAC3 2e178b91-f4a6-4154-bbdd-401259553bd5 67d59bc88c93ec2d8dd21bf228c8c3d5 { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03764.RNA-Seq.chimeric.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 152fb4a9-b54c-4578-b349-f845b2dcafb1.rna_seq.chimeric.gdc_realn.bam 20885227 BAM chimeric harmonized CPTAC3 6cc40666-fdae-48bc-86f5-594bbf62b14e 82ae87dfc0366babc6dd215a604c75b7 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor' } +C3N-03764.RNA-Seq.genomic.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 6a7c7dd7-ba60-4968-8c25-2708b3936348.rna_seq.genomic.gdc_realn.bam 7782960355 BAM genomic harmonized CPTAC3 ea8d5406-accd-4287-8184-4753af827d9a c93e7ef86a038f46eec1747765513594 { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03764.RNA-Seq.genomic.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 152fb4a9-b54c-4578-b349-f845b2dcafb1.rna_seq.genomic.gdc_realn.bam 12644170522 BAM genomic harmonized CPTAC3 66f18147-198d-4a60-9114-7ff9ba7cd75d ba7dd51975fe6faaa65fe00874433146 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor' } +C3N-03764.RNA-Seq.R1_L001.A C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCACGGAC-GTCTCGCA_S3_L001_R1_001.fastq.gz 3030574716 FASTQ R1_L001 unaligned CPTAC3 746c6586-5eee-4009-9f7b-ad0ecbc3d7e1 cef42e7ab7bd0b473aaf6ca58bbe0d12 { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-03764.RNA-Seq.R1_L003.T C3N-03764 LUAD RNA-Seq tumor CPT0246030009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATGGCATG-AAGGTACC_S10_L003_R1_001.fastq.gz 3318022252 FASTQ R1_L003 unaligned CPTAC3 91751b20-d366-4f86-b744-0d697d0a38db 78f822294c5fc4973c8385dd4efda317 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03764.RNA-Seq.R2_L001.A C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 190621_UNC32-K00270_0184_AH7CLLBBXY_GCACGGAC-GTCTCGCA_S3_L001_R2_001.fastq.gz 3628983578 FASTQ R2_L001 unaligned CPTAC3 eb8206f8-4a64-4e92-96b2-820c0be176f9 25eab66c63138702d6710b163ef1e5ab { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-03764.RNA-Seq.R2_L003.T C3N-03764 LUAD RNA-Seq tumor CPT0246030009 190604_UNC32-K00270_0177_AH7F5VBBXY_ATGGCATG-AAGGTACC_S10_L003_R2_001.fastq.gz 3789747377 FASTQ R2_L003 unaligned CPTAC3 19321d88-2e65-4487-8543-35536d48bd3b c7717afba1122648fe40402fd8112d64 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-03764.RNA-Seq.transcriptome.A.hg38 C3N-03764 LUAD RNA-Seq tissue_normal CPT0246040009 6a7c7dd7-ba60-4968-8c25-2708b3936348.rna_seq.transcriptome.gdc_realn.bam 7987634173 BAM transcriptome harmonized CPTAC3 f92e8034-d631-4c43-975a-8b9f453b7bb3 a4ada6f555b1d55d8a7f06b64d1d7323 { 'aliquot_tag': 'ALQ_5df752ef', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03764.RNA-Seq.transcriptome.T.hg38 C3N-03764 LUAD RNA-Seq tumor CPT0246030009 152fb4a9-b54c-4578-b349-f845b2dcafb1.rna_seq.transcriptome.gdc_realn.bam 8483973742 BAM transcriptome harmonized CPTAC3 afebc08a-3853-4d6f-837d-61b8887aa59d e5dc25f3d01559c3f630b61889a7ea06 { 'aliquot_tag': 'ALQ_efd78eff', 'gdc_sample_type': 'Primary Tumor' } C3N-03764.WGS.N C3N-03764 LUAD WGS blood_normal CPT0246070002 CPT0246070002.WholeGenome.RP-1303.bam 68558131283 BAM aligned CPTAC3 353bfd86-90f5-48af-b4eb-c1b0debc2bef 5be56079b734c4522884d1c627bfc4d2 { 'aliquot_tag': 'ALQ_8d85f1b7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03764.WGS.N.hg38 C3N-03764 LUAD WGS blood_normal CPT0246070002 6fd426f8-0858-4065-98e6-df2c1651774b_wgs_gdc_realn.bam 99778126754 BAM harmonized CPTAC3 4334fe61-4e0f-46bb-81ed-f1bf83fba41b 410dc04a6cfbcff38a5a1a400fe9d2ff { 'aliquot_tag': 'ALQ_8d85f1b7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03764.WGS.T C3N-03764 LUAD WGS tumor CPT0246030006 CPT0246030006.WholeGenome.RP-1303.bam 76288762672 BAM aligned CPTAC3 896b718b-9b15-43c7-9caa-ba83e4256a1e bd0195a8457f26d30642079007908059 { 'aliquot_tag': 'ALQ_7f68936e', 'gdc_sample_type': 'Primary Tumor' } @@ -36024,16 +38371,16 @@ C3N-03765.miRNA-Seq.A C3N-03765 LUAD miRNA-Seq tissue_normal CPT0247200009 19072 C3N-03765.miRNA-Seq.A.hg38 C3N-03765 LUAD miRNA-Seq tissue_normal CPT0247200009 31113c3f-ff40-42e8-863e-b75dfb0c7ff3_mirnaseq_gdc_realn.bam 277765805 BAM harmonized CPTAC3 aa6a030d-3073-42f2-9d10-cdc63d81fdb7 08fff1d000d4969213a9bf999eaf2992 { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03765.miRNA-Seq.T C3N-03765 LUAD miRNA-Seq tumor CPT0247190009 190722_UNC31-K00269_0234_AH7VGTBBXY_TAATCG_S35_L004_R1_001.unaln.bam 203104741 BAM unaligned CPTAC3 fb75cd8b-09b3-49c2-a2f1-c558725b4196 243fa191ad56a5c5d469c14a45724b11 { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor' } C3N-03765.miRNA-Seq.T.hg38 C3N-03765 LUAD miRNA-Seq tumor CPT0247190009 db7a6af3-754c-4a99-ae31-c1d13bbe08c1_mirnaseq_gdc_realn.bam 222978776 BAM harmonized CPTAC3 a09bf700-1bc0-4f72-b404-3bb964f1ba93 36167127b4856da2192f7eca32c73447 { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03765.RNA-Seq.chimeric.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 8ddfc5d0-c8e1-4434-a9d6-e211b2de2260.rna_seq.chimeric.gdc_realn.bam 40741698 BAM chimeric harmonized CPTAC3 5af25ebe-8ff7-4863-acfc-fc9c719aaa2a 4b30eb25499c793cfd7b6cafc3b47b41 { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03765.RNA-Seq.chimeric.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 02b4344b-1138-4407-9694-a145578328e0.rna_seq.chimeric.gdc_realn.bam 28559871 BAM chimeric harmonized CPTAC3 0b278a3b-3325-43c9-984d-3f310d12980a 0aab6d8f0a9a7ca160ed2ac569377d1d { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03765.RNA-Seq.genomic.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 8ddfc5d0-c8e1-4434-a9d6-e211b2de2260.rna_seq.genomic.gdc_realn.bam 12296950358 BAM genomic harmonized CPTAC3 a757140b-1e29-45b3-9a47-e153ae4cb7fd 6e4c7d7b8395b46cbb335874fad289c6 { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03765.RNA-Seq.genomic.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 02b4344b-1138-4407-9694-a145578328e0.rna_seq.genomic.gdc_realn.bam 13399091936 BAM genomic harmonized CPTAC3 92cc69e9-657a-4c58-bc91-b5d2d9a482d0 78daf8dea5a87847c0cbcd9043320f26 { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03765.RNA-Seq.R1_L004.T C3N-03765 LUAD RNA-Seq tumor CPT0247190009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCAAGC-TCACGCCG_S14_L004_R1_001.fastq.gz 4116993420 FASTQ R1_L004 unaligned CPTAC3 295cd9a0-a958-4712-8537-cf9f29c46657 68c525fa29464225015e5be8b6896649 { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03765.RNA-Seq.R1_L005.A C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 190607_UNC32-K00270_0179_BH75W2BBXY_CAAGCTAG-ACATAGCG_S17_L005_R1_001.fastq.gz 4020199598 FASTQ R1_L005 unaligned CPTAC3 9ffe5ebe-6755-4cce-a8a3-f78a8dfe4a60 aa2808dec856d34059b074c7b7708388 { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03765.RNA-Seq.R2_L004.T C3N-03765 LUAD RNA-Seq tumor CPT0247190009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCAAGC-TCACGCCG_S14_L004_R2_001.fastq.gz 4693410122 FASTQ R2_L004 unaligned CPTAC3 7d1a1e74-f916-4eaf-9f92-63f2052bf10f 914cc51b3ceea15a2b29f9ea446ee24e { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03765.RNA-Seq.R2_L005.A C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 190607_UNC32-K00270_0179_BH75W2BBXY_CAAGCTAG-ACATAGCG_S17_L005_R2_001.fastq.gz 4493721084 FASTQ R2_L005 unaligned CPTAC3 9a4769fa-9da5-4b48-8bae-cd3c3ae4a321 f9d7c3ddf6711d825165d13454f74147 { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03765.RNA-Seq.transcriptome.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 8ddfc5d0-c8e1-4434-a9d6-e211b2de2260.rna_seq.transcriptome.gdc_realn.bam 7978328318 BAM transcriptome harmonized CPTAC3 d7de507b-de8b-4013-81f5-729ac758287a 03da66bba555734320e1cd9877e4d3ea { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03765.RNA-Seq.transcriptome.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 02b4344b-1138-4407-9694-a145578328e0.rna_seq.transcriptome.gdc_realn.bam 8891784375 BAM transcriptome harmonized CPTAC3 9a5d8d8c-ffce-4e65-9556-267708258f52 9034b4482317c2429afb5e4983b1712e { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03765.RNA-Seq.chimeric.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 d3233f05-dbe9-4c98-8619-d7ec668b7229.rna_seq.chimeric.gdc_realn.bam 40729552 BAM chimeric harmonized CPTAC3 32c980df-1563-4664-a501-15d42695fc75 423174ad2cb97a4bb65c163a067346d4 { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03765.RNA-Seq.chimeric.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 9f179afe-41e7-4f43-95ea-6c7dc84e1989.rna_seq.chimeric.gdc_realn.bam 28558648 BAM chimeric harmonized CPTAC3 b5a4a810-67fe-4bd5-861c-dd0df1988032 8ba573f7ec86ffbfc6e77724f0644f02 { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03765.RNA-Seq.genomic.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 d3233f05-dbe9-4c98-8619-d7ec668b7229.rna_seq.genomic.gdc_realn.bam 12297778340 BAM genomic harmonized CPTAC3 e210e3ad-a591-41f9-8190-3d1b92c8b829 c34dfdad6ee787128aa8f243eadb2da7 { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03765.RNA-Seq.genomic.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 9f179afe-41e7-4f43-95ea-6c7dc84e1989.rna_seq.genomic.gdc_realn.bam 13400865327 BAM genomic harmonized CPTAC3 f77f13f3-54b7-453e-86b3-a300faec4435 8068c2b064f573315df84502f12fd421 { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03765.RNA-Seq.R1_L004.T C3N-03765 LUAD RNA-Seq tumor CPT0247190009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCAAGC-TCACGCCG_S14_L004_R1_001.fastq.gz 4116993420 FASTQ R1_L004 unaligned CPTAC3 295cd9a0-a958-4712-8537-cf9f29c46657 68c525fa29464225015e5be8b6896649 { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03765.RNA-Seq.R1_L005.A C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 190607_UNC32-K00270_0179_BH75W2BBXY_CAAGCTAG-ACATAGCG_S17_L005_R1_001.fastq.gz 4020199598 FASTQ R1_L005 unaligned CPTAC3 9ffe5ebe-6755-4cce-a8a3-f78a8dfe4a60 aa2808dec856d34059b074c7b7708388 { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03765.RNA-Seq.R2_L004.T C3N-03765 LUAD RNA-Seq tumor CPT0247190009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCGCAAGC-TCACGCCG_S14_L004_R2_001.fastq.gz 4693410122 FASTQ R2_L004 unaligned CPTAC3 7d1a1e74-f916-4eaf-9f92-63f2052bf10f 914cc51b3ceea15a2b29f9ea446ee24e { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03765.RNA-Seq.R2_L005.A C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 190607_UNC32-K00270_0179_BH75W2BBXY_CAAGCTAG-ACATAGCG_S17_L005_R2_001.fastq.gz 4493721084 FASTQ R2_L005 unaligned CPTAC3 9a4769fa-9da5-4b48-8bae-cd3c3ae4a321 f9d7c3ddf6711d825165d13454f74147 { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03765.RNA-Seq.transcriptome.A.hg38 C3N-03765 LUAD RNA-Seq tissue_normal CPT0247200009 d3233f05-dbe9-4c98-8619-d7ec668b7229.rna_seq.transcriptome.gdc_realn.bam 8933045027 BAM transcriptome harmonized CPTAC3 fc46fa86-8ceb-4004-aa7e-13b7ba3cf5f8 619ecfb8c4de52267855a90621df35b0 { 'aliquot_tag': 'ALQ_43c85e90', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03765.RNA-Seq.transcriptome.T.hg38 C3N-03765 LUAD RNA-Seq tumor CPT0247190009 9f179afe-41e7-4f43-95ea-6c7dc84e1989.rna_seq.transcriptome.gdc_realn.bam 9973484739 BAM transcriptome harmonized CPTAC3 b16fa310-58f0-4090-b61e-d067944f654b 06699d5cbb74eb4e0395b608b23399f6 { 'aliquot_tag': 'ALQ_c84c4e4f', 'gdc_sample_type': 'Primary Tumor' } C3N-03765.WGS.N C3N-03765 LUAD WGS blood_normal CPT0247230002 CPT0247230002.WholeGenome.RP-1303.bam 69883287120 BAM aligned CPTAC3 9ddae3ef-7094-4eef-a077-b65f39b90efb 82deb10b7a7c9b379561986f0f06bb87 { 'aliquot_tag': 'ALQ_93bafdc8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03765.WGS.N.hg38 C3N-03765 LUAD WGS blood_normal CPT0247230002 34da4eaa-aea2-4b64-b944-99f5f726926e_wgs_gdc_realn.bam 101718894326 BAM harmonized CPTAC3 5fe7f154-ec05-4c4d-ac14-6305dcf27d4e 8892befbfe315f30869e070518ec577f { 'aliquot_tag': 'ALQ_93bafdc8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03765.WGS.T C3N-03765 LUAD WGS tumor CPT0247190006 CPT0247190006.WholeGenome.RP-1303.bam 62203165112 BAM aligned CPTAC3 2bfcd397-dd79-423f-bde9-fd38ed90d106 f4cdfa82a770295b56259b6b6fa53b9b { 'aliquot_tag': 'ALQ_58f353de', 'gdc_sample_type': 'Primary Tumor' } @@ -36048,13 +38395,16 @@ C3N-03767.MethArray.Green.T C3N-03767 UCEC Methylation Array tumor CPT0247970006 C3N-03767.MethArray.Red.T C3N-03767 UCEC Methylation Array tumor CPT0247970006 203561620077_R08C01_Red.idat 13676221 IDAT Red NA CPTAC3 b554dcaa-e494-496d-a188-e21bbdddfbcd c7f95b5433df6f10de299c71080a104e { 'aliquot_tag': 'ALQ_b906fd2', 'gdc_sample_type': 'Primary Tumor' } C3N-03767.miRNA-Seq.T C3N-03767 UCEC miRNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0215_BH7FYKBBXY_ACTTGA_S8_L001_R1_001.unaln.bam 238996539 BAM unaligned CPTAC3 d11de997-e34f-496b-9297-91f04e56df92 515501920160ad98cda1094f22f5a75d { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor' } C3N-03767.miRNA-Seq.T.hg38 C3N-03767 UCEC miRNA-Seq tumor CPT0247970009 f49402bc-efc2-49ab-9925-9b4b1decabb7_mirnaseq_gdc_realn.bam 265433972 BAM harmonized CPTAC3 d6892e25-142a-4d11-aa54-85da8e05cbdb 892a0e75384a95593fbf0d30242aeb27 { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor' } -C3N-03767.RNA-Seq.chimeric.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 653b3b0f-a3e2-453d-99e0-64de0782e669.rna_seq.chimeric.gdc_realn.bam 34783342 BAM chimeric harmonized CPTAC3 b75da403-520d-456b-9f7d-ed8cf87ccc5f 435c915c5933b45bdfcd506cee19b858 { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor' } -C3N-03767.RNA-Seq.genomic.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 653b3b0f-a3e2-453d-99e0-64de0782e669.rna_seq.genomic.gdc_realn.bam 8120220374 BAM genomic harmonized CPTAC3 5e76d094-8f84-476e-8b37-c41c431c0528 5686aed5201c9ede709962c2f6ee8b2e { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor' } -C3N-03767.RNA-Seq.R1_L005.T C3N-03767 UCEC RNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0214_AH7FTJBBXY_TGGATCGA-GTGCGATA_S17_L005_R1_001.fastq.gz 4133180720 FASTQ R1_L005 unaligned CPTAC3 c908803c-3935-4016-950c-87170439cf92 9f2383e26805c3de59eb2e70dcaa7f6a { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor' } -C3N-03767.RNA-Seq.R1_.T C3N-03767 UCEC RNA-Seq tumor CPT0354100001 20210729_P3_E12_WB7988-Plate3_S60_R1_001.fastq.gz 5241227135 FASTQ R1_ unaligned CPTAC3 333794c4-d00b-4ba4-b1e2-965d03cde411 3658ba752d68606cc550f24707419bc9 { 'aliquot_tag': 'ALQ_21beaa4c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03767.RNA-Seq.R2_L005.T C3N-03767 UCEC RNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0214_AH7FTJBBXY_TGGATCGA-GTGCGATA_S17_L005_R2_001.fastq.gz 4499270582 FASTQ R2_L005 unaligned CPTAC3 3e24a777-67f7-4371-bf56-f5ab2a8dc9b2 53f732c5495839b5b9966feab3f1f401 { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor' } -C3N-03767.RNA-Seq.R2_.T C3N-03767 UCEC RNA-Seq tumor CPT0354100001 20210729_P3_E12_WB7988-Plate3_S60_R2_001.fastq.gz 5434732832 FASTQ R2_ unaligned CPTAC3 e76352e6-b50c-4f8e-bf35-0bb459e223b5 63f6469fca19dca6fd32a5883f4f1321 { 'aliquot_tag': 'ALQ_21beaa4c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03767.RNA-Seq.transcriptome.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 653b3b0f-a3e2-453d-99e0-64de0782e669.rna_seq.transcriptome.gdc_realn.bam 11086330454 BAM transcriptome harmonized CPTAC3 8dc53ddb-dbf2-4fbd-b927-7499294be09d 496ff7319aa63e131cb2016b2824f67e { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor' } +C3N-03767.RNA-Seq.chimeric.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 b422217b-da80-44a5-b196-6c85b2de35cd.rna_seq.chimeric.gdc_realn.bam 34760137 BAM chimeric harmonized CPTAC3 02e98a26-ffbe-424a-a438-1caec7898e37 033cd094f2b6969d1df7ce780c3e7420 { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor' } +C3N-03767.RNA-Seq.chimeric.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0354100001 68bbbaea-a17b-4993-8214-736321251aa8.rna_seq.chimeric.gdc_realn.bam 89186223 BAM chimeric harmonized CPTAC3 571344aa-7eec-4a9c-9f1f-5d5651871e60 f38d97d71df87e9dec932fc30be890f6 { 'aliquot_tag': 'ALQ_21beaa4c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03767.RNA-Seq.genomic.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 b422217b-da80-44a5-b196-6c85b2de35cd.rna_seq.genomic.gdc_realn.bam 8121193570 BAM genomic harmonized CPTAC3 d0fda6fc-2ab2-4268-ab69-1ad263bcedfc 92b0ef32c6e9ad8cc1b9ff7b4fecc095 { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor' } +C3N-03767.RNA-Seq.genomic.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0354100001 68bbbaea-a17b-4993-8214-736321251aa8.rna_seq.genomic.gdc_realn.bam 7124132949 BAM genomic harmonized CPTAC3 f1f0da13-4fa5-4040-bc7e-71c48d471498 c629b595d4d02ec1f37fbd577af136f5 { 'aliquot_tag': 'ALQ_21beaa4c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03767.RNA-Seq.R1_L005.T C3N-03767 UCEC RNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0214_AH7FTJBBXY_TGGATCGA-GTGCGATA_S17_L005_R1_001.fastq.gz 4133180720 FASTQ R1_L005 unaligned CPTAC3 c908803c-3935-4016-950c-87170439cf92 9f2383e26805c3de59eb2e70dcaa7f6a { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03767.RNA-Seq.R2_L005.T C3N-03767 UCEC RNA-Seq tumor CPT0247970009 190508_UNC31-K00269_0214_AH7FTJBBXY_TGGATCGA-GTGCGATA_S17_L005_R2_001.fastq.gz 4499270582 FASTQ R2_L005 unaligned CPTAC3 3e24a777-67f7-4371-bf56-f5ab2a8dc9b2 53f732c5495839b5b9966feab3f1f401 { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-03767.RNA-Seq.T C3N-03767 UCEC RNA-Seq tumor CPT0354100001 20210729_P3_E12_WB7988-Plate3_S60_R1_001.fastq.gz 5241227135 FASTQ unaligned CPTAC3 333794c4-d00b-4ba4-b1e2-965d03cde411 3658ba752d68606cc550f24707419bc9 +C3N-03767.RNA-Seq.T C3N-03767 UCEC RNA-Seq tumor CPT0354100001 20210729_P3_E12_WB7988-Plate3_S60_R2_001.fastq.gz 5434732832 FASTQ unaligned CPTAC3 e76352e6-b50c-4f8e-bf35-0bb459e223b5 63f6469fca19dca6fd32a5883f4f1321 +C3N-03767.RNA-Seq.transcriptome.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0247970009 b422217b-da80-44a5-b196-6c85b2de35cd.rna_seq.transcriptome.gdc_realn.bam 12650539887 BAM transcriptome harmonized CPTAC3 80021664-1948-47cc-a89b-4ecd231b1805 08b48416bda29194393c22c04156a08d { 'aliquot_tag': 'ALQ_9b2f7243', 'gdc_sample_type': 'Primary Tumor' } +C3N-03767.RNA-Seq.transcriptome.T.hg38 C3N-03767 UCEC RNA-Seq tumor CPT0354100001 68bbbaea-a17b-4993-8214-736321251aa8.rna_seq.transcriptome.gdc_realn.bam 6127456768 BAM transcriptome harmonized CPTAC3 f85cc2a9-e9eb-4985-8bd0-cea4db7637d4 5976bee5e45ff2c4299dacdfb6e57cde { 'aliquot_tag': 'ALQ_21beaa4c', 'gdc_sample_type': 'Primary Tumor' } C3N-03767.WGS.N C3N-03767 UCEC WGS blood_normal CPT0247990002 CPT0247990002.WholeGenome.RP-1303.bam 80851906879 BAM aligned CPTAC3 1017a00f-e2db-49f0-b50e-5f23ebb7e222 13fb9a19f357c331a427e6d2a1e15ff6 { 'aliquot_tag': 'ALQ_b3cd15aa', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03767.WGS.N.hg38 C3N-03767 UCEC WGS blood_normal CPT0247990002 87e2f29e-c115-408e-88e6-6f3baa0f4c1a_wgs_gdc_realn.bam 119337073391 BAM harmonized CPTAC3 ed956fcc-1f64-47dc-acaa-530cf90cbce7 8f72ca46944223c975f6e41fe44b550f { 'aliquot_tag': 'ALQ_b3cd15aa', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03767.WGS.T C3N-03767 UCEC WGS tumor CPT0247970006 CPT0247970006.WholeGenome.RP-1303.bam 78588737004 BAM aligned CPTAC3 ac7e93ef-6643-4c14-84de-5f6248c4e068 2bba2dfdc2b80595fcbc7f58d354a236 { 'aliquot_tag': 'ALQ_b906fd2', 'gdc_sample_type': 'Primary Tumor' } @@ -36069,11 +38419,11 @@ C3N-03778.MethArray.Red.A C3N-03778 PDA Methylation Array tissue_normal CPT02469 C3N-03778.MethArray.Red.T C3N-03778 PDA Methylation Array tumor CPT0246890006 203561620153_R01C01_Red.idat 13676211 IDAT Red NA CPTAC3 aeaaf74d-7228-4af6-9123-114427e2f887 376c8e648045023f1e2a2549417834f1 { 'aliquot_tag': 'ALQ_d98b09a2', 'gdc_sample_type': 'Primary Tumor' } C3N-03778.miRNA-Seq.T C3N-03778 PDA miRNA-Seq tumor CPT0246890009 190813_UNC32-K00270_0196_AH5MCWBBXY_TAGCTT_S39_L004_R1_001.unaln.bam 289370923 BAM unaligned CPTAC3 53cab8d5-e5dc-4a9f-87f3-59eada94071b 4fdfb5b6b7294be3261a634825812258 { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor' } C3N-03778.miRNA-Seq.T.hg38 C3N-03778 PDA miRNA-Seq tumor CPT0246890009 29558d21-bd5a-4266-b99e-c6e0d17e4023_mirnaseq_gdc_realn.bam 322001244 BAM harmonized CPTAC3 c3701090-ae6a-4590-a4bc-25ae3bd43b82 1afe7e1f906b80ca0899dc0a51ffd1a9 { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor' } -C3N-03778.RNA-Seq.chimeric.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 1ea24a8a-a114-4dd3-b3be-8b1aab9a80d8.rna_seq.chimeric.gdc_realn.bam 204941767 BAM chimeric harmonized CPTAC3 62c090fe-1e16-42aa-bd78-15662f251d43 a67f5026d09c410bbc6676e7188b0cc5 { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor' } -C3N-03778.RNA-Seq.genomic.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 1ea24a8a-a114-4dd3-b3be-8b1aab9a80d8.rna_seq.genomic.gdc_realn.bam 9627492553 BAM genomic harmonized CPTAC3 9695eae4-5566-4699-aa1a-b2dc361a1d48 f4acdd59ea7fcbdb6fcb8d29471e266a { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor' } -C3N-03778.RNA-Seq.R1_L002.T C3N-03778 PDA RNA-Seq tumor CPT0246890009 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAATAC-TTCTAACG_S7_L002_R1_001.fastq.gz 3534292099 FASTQ R1_L002 unaligned CPTAC3 d7e0f140-c87d-4ea7-98a5-5b7da9618454 6903490e4d363e009439b464b67a81d6 { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor' } -C3N-03778.RNA-Seq.R2_L002.T C3N-03778 PDA RNA-Seq tumor CPT0246890009 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAATAC-TTCTAACG_S7_L002_R2_001.fastq.gz 3526112851 FASTQ R2_L002 unaligned CPTAC3 ba8b7185-1e3a-43ed-bf0a-7d82c45f4a36 69d9a77920bfa7b65deca29592f3a0ea { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor' } -C3N-03778.RNA-Seq.transcriptome.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 1ea24a8a-a114-4dd3-b3be-8b1aab9a80d8.rna_seq.transcriptome.gdc_realn.bam 6490825083 BAM transcriptome harmonized CPTAC3 553e678e-1e6f-4a66-b1bd-32ff9ab86c92 09ee3b50c77648c5eee39a703194700d { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor' } +C3N-03778.RNA-Seq.chimeric.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 0a75dbff-12eb-4e72-a169-329c9983436f.rna_seq.chimeric.gdc_realn.bam 204927441 BAM chimeric harmonized CPTAC3 9ba5d2f8-990d-4956-ad4e-7083ae082135 9864d971fc74a9f3a87ae11a3b11b099 { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor' } +C3N-03778.RNA-Seq.genomic.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 0a75dbff-12eb-4e72-a169-329c9983436f.rna_seq.genomic.gdc_realn.bam 9628306782 BAM genomic harmonized CPTAC3 a86e3026-a318-4ed5-b0e2-9a9bed8e603b 84bec7d0307be02cffbd8ed6533ee705 { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor' } +C3N-03778.RNA-Seq.R1_L002.T C3N-03778 PDA RNA-Seq tumor CPT0246890009 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAATAC-TTCTAACG_S7_L002_R1_001.fastq.gz 3534292099 FASTQ R1_L002 unaligned CPTAC3 d7e0f140-c87d-4ea7-98a5-5b7da9618454 6903490e4d363e009439b464b67a81d6 { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03778.RNA-Seq.R2_L002.T C3N-03778 PDA RNA-Seq tumor CPT0246890009 190725_UNC32-K00270_0194_AH7HHFBBXY_CATAATAC-TTCTAACG_S7_L002_R2_001.fastq.gz 3526112851 FASTQ R2_L002 unaligned CPTAC3 ba8b7185-1e3a-43ed-bf0a-7d82c45f4a36 69d9a77920bfa7b65deca29592f3a0ea { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03778.RNA-Seq.transcriptome.T.hg38 C3N-03778 PDA RNA-Seq tumor CPT0246890009 0a75dbff-12eb-4e72-a169-329c9983436f.rna_seq.transcriptome.gdc_realn.bam 7299198706 BAM transcriptome harmonized CPTAC3 b0d238f1-268f-4c73-8c48-6137b6637db4 42f40f3de86d1cfd73b0046e290d8e7c { 'aliquot_tag': 'ALQ_49341433', 'gdc_sample_type': 'Primary Tumor' } C3N-03778.WGS.N C3N-03778 PDA WGS blood_normal CPT0246930002 CPT0246930002.WholeGenome.RP-1303.bam 62952665777 BAM aligned CPTAC3 0f4d1b52-b733-49e7-bc05-c006ca2d27d9 3cc868de22fe860a04f85a3f541c3088 { 'aliquot_tag': 'ALQ_5f0a06bf', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03778.WGS.N.hg38 C3N-03778 PDA WGS blood_normal CPT0246930002 d67e4443-bcf8-4f42-9722-9411f15f1254_wgs_gdc_realn.bam 91696186683 BAM harmonized CPTAC3 30b95e68-12f4-4533-9da9-24bf70dbd1ab 74b606c05d61d6873ee73e93252d5e3a { 'aliquot_tag': 'ALQ_5f0a06bf', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03778.WGS.T C3N-03778 PDA WGS tumor CPT0246890006 CPT0246890006.WholeGenome.RP-1303.bam 131310222249 BAM aligned CPTAC3 108ebdf9-6be0-4f3f-84d1-4f469ff1b4ea 52e4d77d38d3e8edd2fa3b763dd906b1 { 'aliquot_tag': 'ALQ_d98b09a2', 'gdc_sample_type': 'Primary Tumor' } @@ -36094,12 +38444,12 @@ C3N-03780.miRNA-Seq.T C3N-03780 PDA miRNA-Seq tumor CPT0246940009 190828_UNC32-K C3N-03780.miRNA-Seq.T.hg38 C3N-03780 PDA miRNA-Seq tumor CPT0246940009 17319d5e-7745-4f16-89d6-faefe5c5cd34_mirnaseq_gdc_realn.bam 483301628 BAM harmonized CPTAC3 7177ad7e-3dbd-4a40-a672-213f91d96edf 4f1199f89cbcef326907e000f64dd50b { 'aliquot_tag': 'ALQ_7af80327', 'gdc_sample_type': 'Primary Tumor' } C3N-03780.RNA-Seq.chimeric.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 7b8a9778-899c-4c51-8814-99b8c94e0c5b.rna_seq.chimeric.gdc_realn.bam 226483136 BAM chimeric harmonized CPTAC3 4640acad-b36b-40d5-9f6f-3d6ea1b2b3d6 cc8a7157c57f8908dcb5423c64440bd3 { 'aliquot_tag': 'ALQ_47982a97', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03780.RNA-Seq.chimeric.T.hg38 C3N-03780 PDA RNA-Seq tumor CPT0246940009 316f8f14-f228-482c-a54d-03b476620630.rna_seq.chimeric.gdc_realn.bam 167253304 BAM chimeric harmonized CPTAC3 0b24c636-262a-4886-92d1-3410da853b7c 67b58ed4d67dfd4b0b4fe9894f3fee22 { 'aliquot_tag': 'ALQ_7af80327', 'gdc_sample_type': 'Primary Tumor' } -C3N-03780.RNA-Seq.genomic.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 7b8a9778-899c-4c51-8814-99b8c94e0c5b.rna_seq.genomic.gdc_realn.bam 11547427393 BAM genomic harmonized CPTAC3 c88ff507-9a49-4f78-b266-46914e6ecc12 c296e6618e1fdb12506a5d841ed93cb2 { 'aliquot_tag': 'ALQ_47982a97', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03780.RNA-Seq.genomic.T.hg38 C3N-03780 PDA RNA-Seq tumor CPT0246940009 316f8f14-f228-482c-a54d-03b476620630.rna_seq.genomic.gdc_realn.bam 7016295415 BAM genomic harmonized CPTAC3 047b941d-c519-407e-b3f4-0ac2f6272cc3 6547eef93477cae145ef5c63560a60fc { 'aliquot_tag': 'ALQ_7af80327', 'gdc_sample_type': 'Primary Tumor' } -C3N-03780.RNA-Seq.R1_L002.T C3N-03780 PDA RNA-Seq tumor CPT0246940009 190725_UNC32-K00270_0194_AH7HHFBBXY_GATCTATC-ATGAGGCT_S8_L002_R1_001.fastq.gz 2545110771 FASTQ R1_L002 unaligned CPTAC3 7a4726d6-a4ec-4223-8097-7a98ac3eb16d 3c2d82d25c3e3f8da7d8d2043228c299 { 'aliquot_tag': 'ALQ_7af80327', 'gdc_sample_type': 'Primary Tumor' } -C3N-03780.RNA-Seq.R1_L005.A C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 190725_UNC32-K00270_0194_AH7HHFBBXY_ACACTAAG-ATCCATAT_S22_L005_R1_001.fastq.gz 4567717714 FASTQ R1_L005 unaligned CPTAC3 8108edeb-bd18-486f-be0f-772a1af60742 35937ccdccaea166c209cc232f38a9a5 { 'aliquot_tag': 'ALQ_47982a97', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03780.RNA-Seq.R2_L002.T C3N-03780 PDA RNA-Seq tumor CPT0246940009 190725_UNC32-K00270_0194_AH7HHFBBXY_GATCTATC-ATGAGGCT_S8_L002_R2_001.fastq.gz 2534465613 FASTQ R2_L002 unaligned CPTAC3 67b965f0-79ad-41e6-bbfe-d0901c2b7e7e b2d77ed0d84542a20327117406a9acc3 { 'aliquot_tag': 'ALQ_7af80327', 'gdc_sample_type': 'Primary Tumor' } -C3N-03780.RNA-Seq.R2_L005.A C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 190725_UNC32-K00270_0194_AH7HHFBBXY_ACACTAAG-ATCCATAT_S22_L005_R2_001.fastq.gz 4637049645 FASTQ R2_L005 unaligned CPTAC3 ba1a9248-3c0d-42a8-86a6-4c34d80ce349 203a960d8f3376d3d2a2c9be635318f7 { 'aliquot_tag': 'ALQ_47982a97', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03780.RNA-Seq.genomic.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 7b8a9778-899c-4c51-8814-99b8c94e0c5b.rna_seq.genomic.gdc_realn.bam 11547427393 BAM genomic harmonized CPTAC3 708e847e-6938-4f9f-b75f-c1fc00f96bee c296e6618e1fdb12506a5d841ed93cb2 { 'aliquot_tag': 'ALQ_47982a97', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03780.RNA-Seq.genomic.T.hg38 C3N-03780 PDA RNA-Seq tumor CPT0246940009 316f8f14-f228-482c-a54d-03b476620630.rna_seq.genomic.gdc_realn.bam 7016295415 BAM genomic harmonized CPTAC3 17878623-f468-4d8a-9a50-8af180376310 6547eef93477cae145ef5c63560a60fc { 'aliquot_tag': 'ALQ_7af80327', 'gdc_sample_type': 'Primary Tumor' } +C3N-03780.RNA-Seq.R1_L002.T C3N-03780 PDA RNA-Seq tumor CPT0246940009 190725_UNC32-K00270_0194_AH7HHFBBXY_GATCTATC-ATGAGGCT_S8_L002_R1_001.fastq.gz 2545110771 FASTQ R1_L002 unaligned CPTAC3 7a4726d6-a4ec-4223-8097-7a98ac3eb16d 3c2d82d25c3e3f8da7d8d2043228c299 { 'aliquot_tag': 'ALQ_7af80327', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03780.RNA-Seq.R1_L005.A C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 190725_UNC32-K00270_0194_AH7HHFBBXY_ACACTAAG-ATCCATAT_S22_L005_R1_001.fastq.gz 4567717714 FASTQ R1_L005 unaligned CPTAC3 8108edeb-bd18-486f-be0f-772a1af60742 35937ccdccaea166c209cc232f38a9a5 { 'aliquot_tag': 'ALQ_47982a97', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03780.RNA-Seq.R2_L002.T C3N-03780 PDA RNA-Seq tumor CPT0246940009 190725_UNC32-K00270_0194_AH7HHFBBXY_GATCTATC-ATGAGGCT_S8_L002_R2_001.fastq.gz 2534465613 FASTQ R2_L002 unaligned CPTAC3 67b965f0-79ad-41e6-bbfe-d0901c2b7e7e b2d77ed0d84542a20327117406a9acc3 { 'aliquot_tag': 'ALQ_7af80327', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03780.RNA-Seq.R2_L005.A C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 190725_UNC32-K00270_0194_AH7HHFBBXY_ACACTAAG-ATCCATAT_S22_L005_R2_001.fastq.gz 4637049645 FASTQ R2_L005 unaligned CPTAC3 ba1a9248-3c0d-42a8-86a6-4c34d80ce349 203a960d8f3376d3d2a2c9be635318f7 { 'aliquot_tag': 'ALQ_47982a97', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-03780.RNA-Seq.transcriptome.A.hg38 C3N-03780 PDA RNA-Seq tissue_normal CPT0246950009 7b8a9778-899c-4c51-8814-99b8c94e0c5b.rna_seq.transcriptome.gdc_realn.bam 11409848911 BAM transcriptome harmonized CPTAC3 5d82d6a6-9447-4b40-9e8e-802549ace4e0 af0711a4d4eab50fc53bbc4420ab9e9a { 'aliquot_tag': 'ALQ_47982a97', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03780.RNA-Seq.transcriptome.T.hg38 C3N-03780 PDA RNA-Seq tumor CPT0246940009 316f8f14-f228-482c-a54d-03b476620630.rna_seq.transcriptome.gdc_realn.bam 5395483709 BAM transcriptome harmonized CPTAC3 7f0ec245-fbdb-4d55-80de-319f223fc59f 8407caa38eb0e2325f181458c7f3c9e2 { 'aliquot_tag': 'ALQ_7af80327', 'gdc_sample_type': 'Primary Tumor' } C3N-03780.WGS.N C3N-03780 PDA WGS blood_normal CPT0246980002 CPT0246980002.WholeGenome.RP-1303.bam 61941393923 BAM aligned CPTAC3 7b255e10-6cad-46c0-9e3f-013902837ca4 8126b294dbfc603e728d7890051daf58 { 'aliquot_tag': 'ALQ_28da37ae', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36117,9 +38467,9 @@ C3N-03781.MethArray.Red.T C3N-03781 HNSCC Methylation Array tumor CPT0245550006 C3N-03781.miRNA-Seq.T C3N-03781 HNSCC miRNA-Seq tumor CPT0245550009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATGAGC_S26_L006_R1_001.unaln.bam 220688043 BAM unaligned CPTAC3 9c371ebe-d16f-4639-a186-7a9d3fe28aac 7c12d0eda38cdefd9c73887c00b2de1e { 'aliquot_tag': 'ALQ_1b2f071', 'gdc_sample_type': 'Primary Tumor' } C3N-03781.miRNA-Seq.T.hg38 C3N-03781 HNSCC miRNA-Seq tumor CPT0245550009 13d66803-a089-402e-9fd0-ba56b9c65db4_mirnaseq_gdc_realn.bam 247705905 BAM harmonized CPTAC3 d281c923-3a88-4f06-a5f3-25f318a9218b 700ecd08416fec06a843bd769ad8a1bf { 'aliquot_tag': 'ALQ_1b2f071', 'gdc_sample_type': 'Primary Tumor' } C3N-03781.RNA-Seq.chimeric.T.hg38 C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 72bc7462-f76d-410b-91b4-76bd54955810.rna_seq.chimeric.gdc_realn.bam 43487493 BAM chimeric harmonized CPTAC3 8e783832-b27b-48f2-9df5-d5d844eb8a4a 1a98b4e38018eef90598c7689e51d203 { 'aliquot_tag': 'ALQ_1b2f071', 'gdc_sample_type': 'Primary Tumor' } -C3N-03781.RNA-Seq.genomic.T.hg38 C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 72bc7462-f76d-410b-91b4-76bd54955810.rna_seq.genomic.gdc_realn.bam 8136915180 BAM genomic harmonized CPTAC3 3258b7d5-25f3-4a80-add9-2cbf632b3f4f 12233dbc56325b7191cc0a045cb8c1a5 { 'aliquot_tag': 'ALQ_1b2f071', 'gdc_sample_type': 'Primary Tumor' } -C3N-03781.RNA-Seq.R1_L001.T C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTCGGAGC-GGTTATAA_S2_L001_R1_001.fastq.gz 3731117687 FASTQ R1_L001 unaligned CPTAC3 7f75da62-f780-4bc8-96e8-0e6a45a99642 86a27f50a94ad7b58771f3576c0e4d4c { 'aliquot_tag': 'ALQ_1b2f071', 'gdc_sample_type': 'Primary Tumor' } -C3N-03781.RNA-Seq.R2_L001.T C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTCGGAGC-GGTTATAA_S2_L001_R2_001.fastq.gz 4368607346 FASTQ R2_L001 unaligned CPTAC3 63228bd7-68ca-4c11-98fb-32628703e58d 6a844311f548fad96699bfd181351bd6 { 'aliquot_tag': 'ALQ_1b2f071', 'gdc_sample_type': 'Primary Tumor' } +C3N-03781.RNA-Seq.genomic.T.hg38 C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 72bc7462-f76d-410b-91b4-76bd54955810.rna_seq.genomic.gdc_realn.bam 8136915180 BAM genomic harmonized CPTAC3 909ec9db-4cec-441d-a62a-0c56d5d2ee67 12233dbc56325b7191cc0a045cb8c1a5 { 'aliquot_tag': 'ALQ_1b2f071', 'gdc_sample_type': 'Primary Tumor' } +C3N-03781.RNA-Seq.R1_L001.T C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTCGGAGC-GGTTATAA_S2_L001_R1_001.fastq.gz 3731117687 FASTQ R1_L001 unaligned CPTAC3 7f75da62-f780-4bc8-96e8-0e6a45a99642 86a27f50a94ad7b58771f3576c0e4d4c { 'aliquot_tag': 'ALQ_1b2f071', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03781.RNA-Seq.R2_L001.T C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 190416_UNC32-K00270_0165_AH5JY2BBXY_GTCGGAGC-GGTTATAA_S2_L001_R2_001.fastq.gz 4368607346 FASTQ R2_L001 unaligned CPTAC3 63228bd7-68ca-4c11-98fb-32628703e58d 6a844311f548fad96699bfd181351bd6 { 'aliquot_tag': 'ALQ_1b2f071', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-03781.RNA-Seq.transcriptome.T.hg38 C3N-03781 HNSCC RNA-Seq tumor CPT0245550009 72bc7462-f76d-410b-91b4-76bd54955810.rna_seq.transcriptome.gdc_realn.bam 11387626215 BAM transcriptome harmonized CPTAC3 355d12e8-6c53-4b9a-b0e8-031c1c6b7a32 3090c5a39b7ef8778683d8f8e1b9ed37 { 'aliquot_tag': 'ALQ_1b2f071', 'gdc_sample_type': 'Primary Tumor' } C3N-03781.WGS.N C3N-03781 HNSCC WGS blood_normal CPT0245590002 CPT0245590002.WholeGenome.RP-1303.bam 76246355753 BAM aligned CPTAC3 2cb7e358-1a35-47a8-8512-e556c216cae0 48e0575083aee515c8330048a63acd05 { 'aliquot_tag': 'ALQ_5390c4f8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03781.WGS.N.hg38 C3N-03781 HNSCC WGS blood_normal CPT0245590002 9ca2769b-5034-4bc2-a214-fb6bf2e96184_wgs_gdc_realn.bam 110363614978 BAM harmonized CPTAC3 dbaf6575-d447-4364-b983-a0529932bf63 4d53fb01f3e99496c957ffa6c8a71d08 { 'aliquot_tag': 'ALQ_5390c4f8', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36134,12 +38484,15 @@ C3N-03782.MethArray.Red.T C3N-03782 HNSCC Methylation Array tumor CPT0245630006 C3N-03782.miRNA-Seq.T C3N-03782 HNSCC miRNA-Seq tumor CPT0245630009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAAAAG_S28_L006_R1_001.unaln.bam 159496986 BAM unaligned CPTAC3 46abb0cb-1719-44ab-ac24-d9bf8d77b64e 19e2d4171a0ad10d28a5366d8ba9eda0 { 'aliquot_tag': 'ALQ_866777f', 'gdc_sample_type': 'Primary Tumor' } C3N-03782.miRNA-Seq.T.hg38 C3N-03782 HNSCC miRNA-Seq tumor CPT0245630009 10348a52-e334-45e7-ab0d-7a6bb5757cdf_mirnaseq_gdc_realn.bam 179911915 BAM harmonized CPTAC3 1acde2ec-93de-42ce-8883-c2a505f3eba5 4519741ef414e346f00967566914f392 { 'aliquot_tag': 'ALQ_866777f', 'gdc_sample_type': 'Primary Tumor' } C3N-03782.RNA-Seq.chimeric.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 3d7b05ab-8781-44f9-9ae7-881bfdf01e08.rna_seq.chimeric.gdc_realn.bam 38009683 BAM chimeric harmonized CPTAC3 b7cf3608-43ed-4715-8ca1-0c7e7125aa7c 03531cccdd80dcf4f14057863610f8f9 { 'aliquot_tag': 'ALQ_866777f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03782.RNA-Seq.genomic.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 3d7b05ab-8781-44f9-9ae7-881bfdf01e08.rna_seq.genomic.gdc_realn.bam 8571982926 BAM genomic harmonized CPTAC3 d0e83c84-9e27-4a88-a831-a9165e56ae4f 8897e2d12b0b13379d018a1c33e139d9 { 'aliquot_tag': 'ALQ_866777f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03782.RNA-Seq.R1_L001.T C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 190416_UNC32-K00270_0165_AH5JY2BBXY_TCCAACGC-TTGGACTT_S4_L001_R1_001.fastq.gz 4055189847 FASTQ R1_L001 unaligned CPTAC3 01883ecf-95e9-432e-bddf-fd32b9b11267 704bc646a6d27cd6925d7ba33e7cabeb { 'aliquot_tag': 'ALQ_866777f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03782.RNA-Seq.R1_.T C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 20210723_P2_B12_WB7988-plate2_S24_R1_001.fastq.gz 5732325261 FASTQ R1_ unaligned CPTAC3 516f4b11-c4ab-404c-a73e-0a90acad0003 0e25f9f014c2b94f246ba37d53db7691 { 'aliquot_tag': 'ALQ_77352640', 'gdc_sample_type': 'Primary Tumor' } -C3N-03782.RNA-Seq.R2_L001.T C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 190416_UNC32-K00270_0165_AH5JY2BBXY_TCCAACGC-TTGGACTT_S4_L001_R2_001.fastq.gz 4711666865 FASTQ R2_L001 unaligned CPTAC3 3b56629d-27c6-4e77-a1a8-02033a0346e0 18eef57a301dc072c237ebd6a6c5203e { 'aliquot_tag': 'ALQ_866777f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03782.RNA-Seq.R2_.T C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 20210723_P2_B12_WB7988-plate2_S24_R2_001.fastq.gz 5990609361 FASTQ R2_ unaligned CPTAC3 5bfd3bf9-5ca2-4442-889c-b154faca3dff c25de015c66678ecc511557903857940 { 'aliquot_tag': 'ALQ_77352640', 'gdc_sample_type': 'Primary Tumor' } +C3N-03782.RNA-Seq.chimeric.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 115f6eaf-76fa-43a7-8bda-9a2f83d1613a.rna_seq.chimeric.gdc_realn.bam 45096173 BAM chimeric harmonized CPTAC3 2881f2c3-ba3f-463c-86e2-c220adce2aa3 aca97be18bb0630916cc9ee5b16fd071 { 'aliquot_tag': 'ALQ_77352640', 'gdc_sample_type': 'Primary Tumor' } +C3N-03782.RNA-Seq.genomic.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 3d7b05ab-8781-44f9-9ae7-881bfdf01e08.rna_seq.genomic.gdc_realn.bam 8571982926 BAM genomic harmonized CPTAC3 d8e95530-9c58-4e4d-8294-d299b8805da9 8897e2d12b0b13379d018a1c33e139d9 { 'aliquot_tag': 'ALQ_866777f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03782.RNA-Seq.genomic.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 115f6eaf-76fa-43a7-8bda-9a2f83d1613a.rna_seq.genomic.gdc_realn.bam 11103380969 BAM genomic harmonized CPTAC3 7714a7f6-98cf-491c-8818-e251c56c5634 5c29917239f2599320be6aa5f48fb166 { 'aliquot_tag': 'ALQ_77352640', 'gdc_sample_type': 'Primary Tumor' } +C3N-03782.RNA-Seq.R1_L001.T C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 190416_UNC32-K00270_0165_AH5JY2BBXY_TCCAACGC-TTGGACTT_S4_L001_R1_001.fastq.gz 4055189847 FASTQ R1_L001 unaligned CPTAC3 01883ecf-95e9-432e-bddf-fd32b9b11267 704bc646a6d27cd6925d7ba33e7cabeb { 'aliquot_tag': 'ALQ_866777f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03782.RNA-Seq.R2_L001.T C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 190416_UNC32-K00270_0165_AH5JY2BBXY_TCCAACGC-TTGGACTT_S4_L001_R2_001.fastq.gz 4711666865 FASTQ R2_L001 unaligned CPTAC3 3b56629d-27c6-4e77-a1a8-02033a0346e0 18eef57a301dc072c237ebd6a6c5203e { 'aliquot_tag': 'ALQ_866777f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03782.RNA-Seq.T C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 20210723_P2_B12_WB7988-plate2_S24_R1_001.fastq.gz 5732325261 FASTQ unaligned CPTAC3 516f4b11-c4ab-404c-a73e-0a90acad0003 0e25f9f014c2b94f246ba37d53db7691 +C3N-03782.RNA-Seq.T C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 20210723_P2_B12_WB7988-plate2_S24_R2_001.fastq.gz 5990609361 FASTQ unaligned CPTAC3 5bfd3bf9-5ca2-4442-889c-b154faca3dff c25de015c66678ecc511557903857940 C3N-03782.RNA-Seq.transcriptome.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0245630009 3d7b05ab-8781-44f9-9ae7-881bfdf01e08.rna_seq.transcriptome.gdc_realn.bam 12706262172 BAM transcriptome harmonized CPTAC3 921ed707-6ea4-4dbf-9222-ff698660510c 0710dcd2a27612e537e0d00e0729f009 { 'aliquot_tag': 'ALQ_866777f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03782.RNA-Seq.transcriptome.T.hg38 C3N-03782 HNSCC RNA-Seq tumor CPT0315410011 115f6eaf-76fa-43a7-8bda-9a2f83d1613a.rna_seq.transcriptome.gdc_realn.bam 10548371176 BAM transcriptome harmonized CPTAC3 eb41f00f-93e5-4268-9a38-1cb2275b72b5 260a005291ab1006bbfdf9d1e3f7eb7b { 'aliquot_tag': 'ALQ_77352640', 'gdc_sample_type': 'Primary Tumor' } C3N-03782.WGS.N C3N-03782 HNSCC WGS blood_normal CPT0245670002 CPT0245670002.WholeGenome.RP-1303.bam 69160197471 BAM aligned CPTAC3 862f1d23-93eb-43fd-b83f-d1eeba14213e a3ae13faa858c825980780397a9107d8 { 'aliquot_tag': 'ALQ_6a340837', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03782.WGS.N.hg38 C3N-03782 HNSCC WGS blood_normal CPT0245670002 050dfd8d-facd-4fc7-ac6a-0d19885cd64d_wgs_gdc_realn.bam 99971026031 BAM harmonized CPTAC3 802567d7-1975-49fc-bb47-5d403f1df38e 6b315e5b98a0c962e1c3e419ed016f5b { 'aliquot_tag': 'ALQ_6a340837', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03782.WGS.T C3N-03782 HNSCC WGS tumor CPT0245630006 CPT0245630006.WholeGenome.RP-1303.bam 66558324478 BAM aligned CPTAC3 daba88af-2e4c-43ff-a405-2b39381da0c0 eda61152f71122663cd1250b7b838159 { 'aliquot_tag': 'ALQ_98d96aee', 'gdc_sample_type': 'Primary Tumor' } @@ -36153,12 +38506,15 @@ C3N-03783.MethArray.Red.T C3N-03783 HNSCC Methylation Array tumor CPT0245730006 C3N-03783.miRNA-Seq.T C3N-03783 HNSCC miRNA-Seq tumor CPT0245730009 190228_UNC32-K00270_0151_AHYLY3BBXX_CACCGG_S30_L006_R1_001.unaln.bam 186281546 BAM unaligned CPTAC3 45f7e3a2-5184-44d2-8eae-8a393dc7b33a a539c7d5b9e67d70b9b09d6a164965ac { 'aliquot_tag': 'ALQ_c33aa4da', 'gdc_sample_type': 'Primary Tumor' } C3N-03783.miRNA-Seq.T.hg38 C3N-03783 HNSCC miRNA-Seq tumor CPT0245730009 df1b38fb-069d-44f9-a6fa-a8d460ec33ec_mirnaseq_gdc_realn.bam 208183504 BAM harmonized CPTAC3 62c86bea-8355-4cb5-989a-d22062aba85c 143849a1e2b181dc320df1428ba4baf6 { 'aliquot_tag': 'ALQ_c33aa4da', 'gdc_sample_type': 'Primary Tumor' } C3N-03783.RNA-Seq.chimeric.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 daa92392-c0c0-4248-902c-43ab616bbdf9.rna_seq.chimeric.gdc_realn.bam 47955896 BAM chimeric harmonized CPTAC3 e23685df-44bc-448d-a320-8d50e7485316 8e4c902025d6f255d61e45654ffb46ea { 'aliquot_tag': 'ALQ_c33aa4da', 'gdc_sample_type': 'Primary Tumor' } -C3N-03783.RNA-Seq.genomic.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 daa92392-c0c0-4248-902c-43ab616bbdf9.rna_seq.genomic.gdc_realn.bam 9195298582 BAM genomic harmonized CPTAC3 8fe8172d-6a13-4b7d-8db5-8613359a02c2 599db3c7a7759b08f599fd73d9e6bc1e { 'aliquot_tag': 'ALQ_c33aa4da', 'gdc_sample_type': 'Primary Tumor' } -C3N-03783.RNA-Seq.R1_L001.T C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L001_R1_001.fastq.gz 4390779195 FASTQ R1_L001 unaligned CPTAC3 8d84740f-c498-4448-9c93-026f120190ba b5db0acb6b348e48935d4f1a5d37b52c { 'aliquot_tag': 'ALQ_c33aa4da', 'gdc_sample_type': 'Primary Tumor' } -C3N-03783.RNA-Seq.R1_.T C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 20210729_P3_E5_WB7988-Plate3_S53_R1_001.fastq.gz 8797443848 FASTQ R1_ unaligned CPTAC3 c2c7a172-05a7-4be2-9d17-dfae7010d969 2e4e5c50559e3ba42cc82941ae5e7650 { 'aliquot_tag': 'ALQ_df57520', 'gdc_sample_type': 'Primary Tumor' } -C3N-03783.RNA-Seq.R2_L001.T C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L001_R2_001.fastq.gz 4889416199 FASTQ R2_L001 unaligned CPTAC3 aaea44c9-7660-4445-8160-d22b946eca15 1e118aeb2355eab7140173e0cd5ddb0f { 'aliquot_tag': 'ALQ_c33aa4da', 'gdc_sample_type': 'Primary Tumor' } -C3N-03783.RNA-Seq.R2_.T C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 20210729_P3_E5_WB7988-Plate3_S53_R2_001.fastq.gz 9073985197 FASTQ R2_ unaligned CPTAC3 3abec326-06bf-40a9-a627-2f1051098ddb 861e28e3433417bb68a3e2860a2770fd { 'aliquot_tag': 'ALQ_df57520', 'gdc_sample_type': 'Primary Tumor' } +C3N-03783.RNA-Seq.chimeric.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 49fa9961-1d30-49f3-8fe4-552f99416b5d.rna_seq.chimeric.gdc_realn.bam 195123286 BAM chimeric harmonized CPTAC3 9a3084e0-0dfd-481b-9089-3e75826618d6 83b4646cd32d35aac406799015fa23be { 'aliquot_tag': 'ALQ_df57520', 'gdc_sample_type': 'Primary Tumor' } +C3N-03783.RNA-Seq.genomic.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 daa92392-c0c0-4248-902c-43ab616bbdf9.rna_seq.genomic.gdc_realn.bam 9195298582 BAM genomic harmonized CPTAC3 af9f5b14-6fc8-4dac-8ef4-8d54093219ca 599db3c7a7759b08f599fd73d9e6bc1e { 'aliquot_tag': 'ALQ_c33aa4da', 'gdc_sample_type': 'Primary Tumor' } +C3N-03783.RNA-Seq.genomic.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 49fa9961-1d30-49f3-8fe4-552f99416b5d.rna_seq.genomic.gdc_realn.bam 10773898624 BAM genomic harmonized CPTAC3 b97939b7-9851-4e30-b588-55e7545cbe80 67a25f3238100a26a80556f70fa926c1 { 'aliquot_tag': 'ALQ_df57520', 'gdc_sample_type': 'Primary Tumor' } +C3N-03783.RNA-Seq.R1_L001.T C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L001_R1_001.fastq.gz 4390779195 FASTQ R1_L001 unaligned CPTAC3 8d84740f-c498-4448-9c93-026f120190ba b5db0acb6b348e48935d4f1a5d37b52c { 'aliquot_tag': 'ALQ_c33aa4da', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03783.RNA-Seq.R2_L001.T C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 190426_UNC32-K00270_0167_AH7CK7BBXY_TTACAGGA-TGACAAGC_S1_L001_R2_001.fastq.gz 4889416199 FASTQ R2_L001 unaligned CPTAC3 aaea44c9-7660-4445-8160-d22b946eca15 1e118aeb2355eab7140173e0cd5ddb0f { 'aliquot_tag': 'ALQ_c33aa4da', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03783.RNA-Seq.T C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 20210729_P3_E5_WB7988-Plate3_S53_R1_001.fastq.gz 8797443848 FASTQ unaligned CPTAC3 c2c7a172-05a7-4be2-9d17-dfae7010d969 2e4e5c50559e3ba42cc82941ae5e7650 +C3N-03783.RNA-Seq.T C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 20210729_P3_E5_WB7988-Plate3_S53_R2_001.fastq.gz 9073985197 FASTQ unaligned CPTAC3 3abec326-06bf-40a9-a627-2f1051098ddb 861e28e3433417bb68a3e2860a2770fd C3N-03783.RNA-Seq.transcriptome.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0245730009 daa92392-c0c0-4248-902c-43ab616bbdf9.rna_seq.transcriptome.gdc_realn.bam 13310816514 BAM transcriptome harmonized CPTAC3 f645f0c8-6286-4f9c-9f08-aef9b1139dde 1bc984474867e1ee5954ae1478c95303 { 'aliquot_tag': 'ALQ_c33aa4da', 'gdc_sample_type': 'Primary Tumor' } +C3N-03783.RNA-Seq.transcriptome.T.hg38 C3N-03783 HNSCC RNA-Seq tumor CPT0315430011 49fa9961-1d30-49f3-8fe4-552f99416b5d.rna_seq.transcriptome.gdc_realn.bam 6900169699 BAM transcriptome harmonized CPTAC3 ba65f528-491d-4da5-9732-b3d2b284a1fb 74b44d5280656fbaa0d24e6a42182857 { 'aliquot_tag': 'ALQ_df57520', 'gdc_sample_type': 'Primary Tumor' } C3N-03783.WGS.N C3N-03783 HNSCC WGS blood_normal CPT0245770002 CPT0245770002.WholeGenome.RP-1303.bam 66951127096 BAM aligned CPTAC3 e0345b04-c29f-4b66-92d4-eff47dfc985c 71cfd0af396fe18e53dff937245643d2 { 'aliquot_tag': 'ALQ_a168db92', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03783.WGS.N.hg38 C3N-03783 HNSCC WGS blood_normal CPT0245770002 64224eeb-53e4-45e7-9cd8-4c0f7d2af027_wgs_gdc_realn.bam 95893849570 BAM harmonized CPTAC3 50c68c62-9e46-4bc9-92f5-0ca527c593db 59dd6cfb67488ec7e86bc95def6fa4a7 { 'aliquot_tag': 'ALQ_a168db92', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03783.WGS.T C3N-03783 HNSCC WGS tumor CPT0245730006 CPT0245730006.WholeGenome.RP-1303.bam 67021780356 BAM aligned CPTAC3 521945c7-9ac8-4f6e-8d7b-3426ae408bf6 f273e26d220905ba72af4549da839883 { 'aliquot_tag': 'ALQ_5385b94b', 'gdc_sample_type': 'Primary Tumor' } @@ -36172,12 +38528,15 @@ C3N-03785.MethArray.Red.T C3N-03785 HNSCC Methylation Array tumor CPT0245680006 C3N-03785.miRNA-Seq.T C3N-03785 HNSCC miRNA-Seq tumor CPT0245680009 190228_UNC32-K00270_0151_AHYLY3BBXX_CAACTA_S29_L006_R1_001.unaln.bam 202538382 BAM unaligned CPTAC3 60fb927a-def1-4d00-bb59-1cc2d4a2576b 17c3e852656c945e88e28ee5d819e0a1 { 'aliquot_tag': 'ALQ_7fb6466e', 'gdc_sample_type': 'Primary Tumor' } C3N-03785.miRNA-Seq.T.hg38 C3N-03785 HNSCC miRNA-Seq tumor CPT0245680009 6932485f-b504-4ea3-8b35-5c5ab8ac3d9d_mirnaseq_gdc_realn.bam 227908611 BAM harmonized CPTAC3 5d182dfa-fe9b-4a2a-8d8f-fa184e3c69fe 249ca38f314839a112991f69384e02e0 { 'aliquot_tag': 'ALQ_7fb6466e', 'gdc_sample_type': 'Primary Tumor' } C3N-03785.RNA-Seq.chimeric.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 e8492f2f-a11a-42e3-b2c1-a727d16144ed.rna_seq.chimeric.gdc_realn.bam 43435694 BAM chimeric harmonized CPTAC3 2214c24e-3842-4e28-8307-f2f804f0907c 043dbedcd38fefc6ad78935b3b7d6706 { 'aliquot_tag': 'ALQ_7fb6466e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03785.RNA-Seq.genomic.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 e8492f2f-a11a-42e3-b2c1-a727d16144ed.rna_seq.genomic.gdc_realn.bam 8621214730 BAM genomic harmonized CPTAC3 c755fad4-f367-4017-8315-8d3aa924eed0 e10c34c319d7241d0d96789abb25a58e { 'aliquot_tag': 'ALQ_7fb6466e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03785.RNA-Seq.R1_L001.T C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R1_001.fastq.gz 4188448557 FASTQ R1_L001 unaligned CPTAC3 20175374-0734-4641-854c-024ae0497cac 98f24e34c16d49f9607d1288e7900e6b { 'aliquot_tag': 'ALQ_7fb6466e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03785.RNA-Seq.R1_.T C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 20210723_P2_E9_WB7988-plate2_S57_R1_001.fastq.gz 7681162215 FASTQ R1_ unaligned CPTAC3 f0ff1012-7fea-4576-a2bf-f23a8c483ad5 d5d9a9a24948bafa3e2fda50bd129566 { 'aliquot_tag': 'ALQ_82b58080', 'gdc_sample_type': 'Primary Tumor' } -C3N-03785.RNA-Seq.R2_L001.T C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R2_001.fastq.gz 4640347212 FASTQ R2_L001 unaligned CPTAC3 d7bc6f70-e6b1-4dec-980e-8aac75250ae6 4354258b969adc0e458da9733f95e2bb { 'aliquot_tag': 'ALQ_7fb6466e', 'gdc_sample_type': 'Primary Tumor' } -C3N-03785.RNA-Seq.R2_.T C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 20210723_P2_E9_WB7988-plate2_S57_R2_001.fastq.gz 7946218093 FASTQ R2_ unaligned CPTAC3 e2809076-3d8e-4a38-b328-4cd384377e7a c4a761e360467c46fe15793cc7fd25d8 { 'aliquot_tag': 'ALQ_82b58080', 'gdc_sample_type': 'Primary Tumor' } +C3N-03785.RNA-Seq.chimeric.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 3e315cd5-50e5-4282-8631-16327b31d564.rna_seq.chimeric.gdc_realn.bam 210104300 BAM chimeric harmonized CPTAC3 9969fd85-0778-4fc6-bc7b-98e1e6cdd55f 30b143496855868f87832c4cfd528870 { 'aliquot_tag': 'ALQ_82b58080', 'gdc_sample_type': 'Primary Tumor' } +C3N-03785.RNA-Seq.genomic.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 e8492f2f-a11a-42e3-b2c1-a727d16144ed.rna_seq.genomic.gdc_realn.bam 8621214730 BAM genomic harmonized CPTAC3 32312923-c2cb-4d7e-be0a-b935f2a78103 e10c34c319d7241d0d96789abb25a58e { 'aliquot_tag': 'ALQ_7fb6466e', 'gdc_sample_type': 'Primary Tumor' } +C3N-03785.RNA-Seq.genomic.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 3e315cd5-50e5-4282-8631-16327b31d564.rna_seq.genomic.gdc_realn.bam 11684072769 BAM genomic harmonized CPTAC3 1c122ebe-f0fd-4d64-9033-fd096c18acbd cf5600f8319a9cf77866386b7208e65f { 'aliquot_tag': 'ALQ_82b58080', 'gdc_sample_type': 'Primary Tumor' } +C3N-03785.RNA-Seq.R1_L001.T C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R1_001.fastq.gz 4188448557 FASTQ R1_L001 unaligned CPTAC3 20175374-0734-4641-854c-024ae0497cac 98f24e34c16d49f9607d1288e7900e6b { 'aliquot_tag': 'ALQ_7fb6466e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03785.RNA-Seq.R2_L001.T C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 190426_UNC32-K00270_0167_AH7CK7BBXY_CCGTGAAG-CAGTGGAT_S2_L001_R2_001.fastq.gz 4640347212 FASTQ R2_L001 unaligned CPTAC3 d7bc6f70-e6b1-4dec-980e-8aac75250ae6 4354258b969adc0e458da9733f95e2bb { 'aliquot_tag': 'ALQ_7fb6466e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03785.RNA-Seq.T C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 20210723_P2_E9_WB7988-plate2_S57_R1_001.fastq.gz 7681162215 FASTQ unaligned CPTAC3 f0ff1012-7fea-4576-a2bf-f23a8c483ad5 d5d9a9a24948bafa3e2fda50bd129566 +C3N-03785.RNA-Seq.T C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 20210723_P2_E9_WB7988-plate2_S57_R2_001.fastq.gz 7946218093 FASTQ unaligned CPTAC3 e2809076-3d8e-4a38-b328-4cd384377e7a c4a761e360467c46fe15793cc7fd25d8 C3N-03785.RNA-Seq.transcriptome.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0245680009 e8492f2f-a11a-42e3-b2c1-a727d16144ed.rna_seq.transcriptome.gdc_realn.bam 11018516213 BAM transcriptome harmonized CPTAC3 ed3dcb38-f829-4685-ab1a-7aca7520b216 ddc785ff3c446c88d12940b744e59f25 { 'aliquot_tag': 'ALQ_7fb6466e', 'gdc_sample_type': 'Primary Tumor' } +C3N-03785.RNA-Seq.transcriptome.T.hg38 C3N-03785 HNSCC RNA-Seq tumor CPT0315450011 3e315cd5-50e5-4282-8631-16327b31d564.rna_seq.transcriptome.gdc_realn.bam 6225811419 BAM transcriptome harmonized CPTAC3 54b8edf9-46f1-4c95-a48b-07e8cbff7337 bb5291d79c89db33f06f4970b42d5bcf { 'aliquot_tag': 'ALQ_82b58080', 'gdc_sample_type': 'Primary Tumor' } C3N-03785.WGS.N C3N-03785 HNSCC WGS blood_normal CPT0245720002 CPT0245720002.WholeGenome.RP-1303.bam 98079670435 BAM aligned CPTAC3 1cac1b43-3190-4658-9f5d-7cc642a5da3b 6af63babae6446bf28c6179fae2f2ddb { 'aliquot_tag': 'ALQ_698854e2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03785.WGS.N.hg38 C3N-03785 HNSCC WGS blood_normal CPT0245720002 89026d9b-b739-4d8f-8bf1-81541034c417_wgs_gdc_realn.bam 142615149954 BAM harmonized CPTAC3 4db256f6-bad6-403d-905b-716335777259 baaeb998b886b09dd4b40c48804b0b05 { 'aliquot_tag': 'ALQ_698854e2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03785.WGS.T C3N-03785 HNSCC WGS tumor CPT0245680006 CPT0245680006.WholeGenome.RP-1303.bam 69022650723 BAM aligned CPTAC3 cabe110a-4e85-436c-a9c9-57413d61a345 73dede16fd29582e7cd344b7ccee229a { 'aliquot_tag': 'ALQ_ef095bff', 'gdc_sample_type': 'Primary Tumor' } @@ -36186,15 +38545,16 @@ C3N-03785.WXS.N C3N-03785 HNSCC WXS blood_normal CPT0245720002 CPT0245720002.Who C3N-03785.WXS.N.hg38 C3N-03785 HNSCC WXS blood_normal CPT0245720002 89026d9b-b739-4d8f-8bf1-81541034c417_wxs_gdc_realn.bam 34737306129 BAM harmonized CPTAC3 215dc24d-7f8b-4bb7-b7c2-4c25980ff0c0 9f66127233d88ca8ac2071c42f3a4501 { 'aliquot_tag': 'ALQ_698854e2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03785.WXS.T C3N-03785 HNSCC WXS tumor CPT0245680006 CPT0245680006.WholeExome.RP-1303.bam 23064821578 BAM aligned CPTAC3 9e7b5bab-8679-4354-9489-149e07df005d 04f7d520ced79614a1817896884a9b46 { 'aliquot_tag': 'ALQ_ef095bff', 'gdc_sample_type': 'Primary Tumor' } C3N-03785.WXS.T.hg38 C3N-03785 HNSCC WXS tumor CPT0245680006 58d9cb22-cc39-4db7-b889-647d69bed821_wxs_gdc_realn.bam 31718463963 BAM harmonized CPTAC3 c93c4841-5d45-4476-b6a2-935ba9c20f82 34917359501902f86f17dc1cea7d97e5 { 'aliquot_tag': 'ALQ_ef095bff', 'gdc_sample_type': 'Primary Tumor' } +C3N-03788.miRNA-Seq.T C3N-03788 GBM miRNA-Seq tumor CPT0457770008 220505_UNC32-K00270_0319_AHMV2KBBXY_CTCAGA_S8_L003_R1_001.unaln.bam 381775024 BAM unaligned CPTAC3 df8726e2-4517-4a7a-bdaf-9289ab6ad3f5 3ecb5f14597b720c4de18afc61cf8f8a { 'aliquot_tag': 'ALQ_69925ab1', 'gdc_sample_type': 'Primary Tumor' } C3N-03789.MethArray.Green.T C3N-03789 GBM Methylation Array tumor CPT0244860006 204372030022_R06C01_Grn.idat 13677905 IDAT Green NA CPTAC3 36949622-9245-4639-adbb-5d3825974411 b2699c6a827038d7e364e088d58b08b0 { 'aliquot_tag': 'ALQ_cc448f5a', 'gdc_sample_type': 'Primary Tumor' } C3N-03789.MethArray.Red.T C3N-03789 GBM Methylation Array tumor CPT0244860006 204372030022_R06C01_Red.idat 13677905 IDAT Red NA CPTAC3 801da269-0c53-48e6-9335-e70300569747 4458434e8c9e1e9ee42b9674d717f239 { 'aliquot_tag': 'ALQ_cc448f5a', 'gdc_sample_type': 'Primary Tumor' } C3N-03789.miRNA-Seq.T C3N-03789 GBM miRNA-Seq tumor CPT0244860009 200403_UNC31-K00269_0274_AHCF7GBBXY_TTAGGC_S27_L002_R1_001.unaln.bam 225451718 BAM unaligned CPTAC3 b660df27-cdb3-4bb7-960c-cd23e8296233 ff52890e8305588e649255f692288db9 { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor' } C3N-03789.miRNA-Seq.T.hg38 C3N-03789 GBM miRNA-Seq tumor CPT0244860009 534a589d-dc25-4c71-85fc-d65334cd27ea_mirnaseq_gdc_realn.bam 249583825 BAM harmonized CPTAC3 11545c89-0bfc-4d34-adcb-c5ad211f73f2 27ddc12b2ad3a7604b1eae155f39dfa1 { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03789.RNA-Seq.chimeric.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 d73757f2-11e6-4efa-a6bc-150da1f49b37.rna_seq.chimeric.gdc_realn.bam 257951764 BAM chimeric harmonized CPTAC3 036e1c2f-0847-4952-831a-9c991df21c09 028178dcb7d2e5265adee8f873698dcb { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03789.RNA-Seq.genomic.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 d73757f2-11e6-4efa-a6bc-150da1f49b37.rna_seq.genomic.gdc_realn.bam 9898615548 BAM genomic harmonized CPTAC3 d068a4da-df52-4e8f-9a46-2b355dad6603 e5dc39b462b090b9fb79cd7e3a9fa4de { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03789.RNA-Seq.R1_L006.T C3N-03789 GBM RNA-Seq tumor CPT0244860009 200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R1_001.fastq.gz 4214876403 FASTQ R1_L006 unaligned CPTAC3 de40a9c3-603d-44e2-a76e-9b4a98d3f482 885cf101d94c47ab398d0a77b062ba57 { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03789.RNA-Seq.R2_L006.T C3N-03789 GBM RNA-Seq tumor CPT0244860009 200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R2_001.fastq.gz 4685616893 FASTQ R2_L006 unaligned CPTAC3 0f25e421-ff9d-41ab-bef9-2503901bdb40 8492a7c7df0b07c7410a3373f05e1322 { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor' } -C3N-03789.RNA-Seq.transcriptome.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 d73757f2-11e6-4efa-a6bc-150da1f49b37.rna_seq.transcriptome.gdc_realn.bam 9651937413 BAM transcriptome harmonized CPTAC3 922154f0-53bb-41ae-83cd-0b92e26edd04 099cadf6fe8e45353c07aa47a7fa559e { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03789.RNA-Seq.chimeric.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 94ead061-1dea-4473-b9b6-913d624dc1e9.rna_seq.chimeric.gdc_realn.bam 257911886 BAM chimeric harmonized CPTAC3 c08fb656-b40e-4d2f-b57f-1158801b27cf fb82e204766eb2970edbe0aac7e5506a { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03789.RNA-Seq.genomic.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 94ead061-1dea-4473-b9b6-913d624dc1e9.rna_seq.genomic.gdc_realn.bam 9898430734 BAM genomic harmonized CPTAC3 3a8ad91f-6b6d-41a8-9eba-6b92e87e5efd 24d28fea3b68fe075268e05dcaea8fc9 { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor' } +C3N-03789.RNA-Seq.R1_L006.T C3N-03789 GBM RNA-Seq tumor CPT0244860009 200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R1_001.fastq.gz 4214876403 FASTQ R1_L006 unaligned CPTAC3 de40a9c3-603d-44e2-a76e-9b4a98d3f482 885cf101d94c47ab398d0a77b062ba57 { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03789.RNA-Seq.R2_L006.T C3N-03789 GBM RNA-Seq tumor CPT0244860009 200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R2_001.fastq.gz 4685616893 FASTQ R2_L006 unaligned CPTAC3 0f25e421-ff9d-41ab-bef9-2503901bdb40 8492a7c7df0b07c7410a3373f05e1322 { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-03789.RNA-Seq.transcriptome.T.hg38 C3N-03789 GBM RNA-Seq tumor CPT0244860009 94ead061-1dea-4473-b9b6-913d624dc1e9.rna_seq.transcriptome.gdc_realn.bam 10918795234 BAM transcriptome harmonized CPTAC3 cedb4de6-ea54-4ec8-8aad-16aa836a10cb 6f601acf8394bf923f17dd4226cad072 { 'aliquot_tag': 'ALQ_5cfb92cb', 'gdc_sample_type': 'Primary Tumor' } C3N-03789.WGS.N C3N-03789 GBM WGS blood_normal CPT0244880002 CPT0244880002.WholeGenome.RP-2158.bam 32902918385 BAM aligned CPTAC3 f5c73bfd-9555-4862-bdc0-e05493aa48fb 8be505ed8103b58a1d3b473b30a60c50 { 'aliquot_tag': 'ALQ_7419f522', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03789.WGS.N.hg38 C3N-03789 GBM WGS blood_normal CPT0244880002 d3ab454b-9464-48cf-abf5-4c8ab909b5c0_wgs_gdc_realn.bam 100034438784 BAM harmonized CPTAC3 c300354a-780b-4904-91d1-54e08b324a01 ac8e480fdfec3292c6bd2d26777f821b { 'aliquot_tag': 'ALQ_7419f522', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03789.WGS.T C3N-03789 GBM WGS tumor CPT0244860006 CPT0244860006.WholeGenome.RP-2158.bam 21896768790 BAM aligned CPTAC3 8ecd6587-05f6-42d4-b7a5-bd592a8ecef5 702a7d0055057a49f9dd5e7008888e66 { 'aliquot_tag': 'ALQ_cc448f5a', 'gdc_sample_type': 'Primary Tumor' } @@ -36207,11 +38567,11 @@ C3N-03791.MethArray.Green.T C3N-03791 GBM Methylation Array tumor CPT0248160007 C3N-03791.MethArray.Red.T C3N-03791 GBM Methylation Array tumor CPT0248160007 204367490061_R02C01_Red.idat 13677885 IDAT Red NA CPTAC3 fa4361ca-a50e-4b54-9184-70aeb4ff399e cac71cd107673a14bc856f8017dab04f { 'aliquot_tag': 'ALQ_5bec8470', 'gdc_sample_type': 'Primary Tumor' } C3N-03791.miRNA-Seq.T C3N-03791 GBM miRNA-Seq tumor CPT0248160010 200403_UNC31-K00269_0274_AHCF7GBBXY_TAGCTT_S34_L002_R1_001.unaln.bam 211919722 BAM unaligned CPTAC3 c7ef9ccf-ea0f-4031-a4ba-e3ba563aa40d ef97f7ca01896cc149c083d9fbbea688 { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor' } C3N-03791.miRNA-Seq.T.hg38 C3N-03791 GBM miRNA-Seq tumor CPT0248160010 0b734a68-df90-40a5-8f66-54703e80d84c_mirnaseq_gdc_realn.bam 234465379 BAM harmonized CPTAC3 fd2bd498-1128-45d6-9d50-b1cd46a7690f 5d659a786d1fb7aa021c9a6abeda814f { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor' } -C3N-03791.RNA-Seq.chimeric.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 7450c76a-71a3-444b-af29-d2fa83a25518.rna_seq.chimeric.gdc_realn.bam 166250602 BAM chimeric harmonized CPTAC3 c1736f44-662e-441f-b9c7-dc4ed373f991 a133d28a125a12801ec447701843d330 { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor' } -C3N-03791.RNA-Seq.genomic.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 7450c76a-71a3-444b-af29-d2fa83a25518.rna_seq.genomic.gdc_realn.bam 8036950320 BAM genomic harmonized CPTAC3 db31acee-9a1a-4080-b9af-e1fe1102edde 09ffd12b71508ac43edfd55e05ebc204 { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor' } -C3N-03791.RNA-Seq.R1_L001.T C3N-03791 GBM RNA-Seq tumor CPT0248160010 200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 3230332173 FASTQ R1_L001 unaligned CPTAC3 278403a7-7c34-4b9e-97d5-98df7b34b730 7a8bbaed21fdf9861045ff00de5b66c9 { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor' } -C3N-03791.RNA-Seq.R2_L001.T C3N-03791 GBM RNA-Seq tumor CPT0248160010 200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 3886086941 FASTQ R2_L001 unaligned CPTAC3 e0f0a291-d112-4eac-affa-355d24b03424 cf3d615df0f2b5f6c1e6b9cde957dbd7 { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor' } -C3N-03791.RNA-Seq.transcriptome.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 7450c76a-71a3-444b-af29-d2fa83a25518.rna_seq.transcriptome.gdc_realn.bam 6820212267 BAM transcriptome harmonized CPTAC3 ce8e8d29-fd47-485c-adcf-d62d39ba303b 94e5124e6c2f12c5c1abe4c77b30d538 { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor' } +C3N-03791.RNA-Seq.chimeric.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 51c4f34b-7858-4d32-8740-06fcd215c96b.rna_seq.chimeric.gdc_realn.bam 166237444 BAM chimeric harmonized CPTAC3 5b9a2d99-63a3-43e5-bd3d-beabddc82f34 f83693eaec3a3d5d5ec8f1c1da59eacf { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor' } +C3N-03791.RNA-Seq.genomic.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 51c4f34b-7858-4d32-8740-06fcd215c96b.rna_seq.genomic.gdc_realn.bam 8037991660 BAM genomic harmonized CPTAC3 fab3845a-5041-4bf2-aff3-3173f8e8d1c5 bfe716e7b502eb0abf5c1b19fd07d838 { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor' } +C3N-03791.RNA-Seq.R1_L001.T C3N-03791 GBM RNA-Seq tumor CPT0248160010 200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 3230332173 FASTQ R1_L001 unaligned CPTAC3 278403a7-7c34-4b9e-97d5-98df7b34b730 7a8bbaed21fdf9861045ff00de5b66c9 { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03791.RNA-Seq.R2_L001.T C3N-03791 GBM RNA-Seq tumor CPT0248160010 200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 3886086941 FASTQ R2_L001 unaligned CPTAC3 e0f0a291-d112-4eac-affa-355d24b03424 cf3d615df0f2b5f6c1e6b9cde957dbd7 { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03791.RNA-Seq.transcriptome.T.hg38 C3N-03791 GBM RNA-Seq tumor CPT0248160010 51c4f34b-7858-4d32-8740-06fcd215c96b.rna_seq.transcriptome.gdc_realn.bam 7697110943 BAM transcriptome harmonized CPTAC3 fc747ae7-24bb-4879-9459-c2941a2896e3 9e1d4620401f9b0264386e22f5f6195b { 'aliquot_tag': 'ALQ_dc932092', 'gdc_sample_type': 'Primary Tumor' } C3N-03791.WGS.N C3N-03791 GBM WGS blood_normal CPT0248220002 CPT0248220002.WholeGenome.RP-2158.bam 26498624553 BAM aligned CPTAC3 3ba6512e-5785-4e32-bce6-13f8b80aad3a 7a926e3c57879ea3f616ed361b6606ad { 'aliquot_tag': 'ALQ_5892a491', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03791.WGS.N.hg38 C3N-03791 GBM WGS blood_normal CPT0248220002 2b68f934-9910-4dc6-adc3-1cf82764a7a0_wgs_gdc_realn.bam 74021298457 BAM harmonized CPTAC3 dbb9edea-f9d6-4add-b71f-a6229f36db20 99d38b70852f3893163262003da66183 { 'aliquot_tag': 'ALQ_5892a491', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03791.WGS.T C3N-03791 GBM WGS tumor CPT0248160007 CPT0248160007.WholeGenome.RP-2158.bam 21814922440 BAM aligned CPTAC3 e8b7da1d-caf4-465b-871e-bd7d05cbc406 45206d11406eeeb9a7d1093a8edb4517 { 'aliquot_tag': 'ALQ_5bec8470', 'gdc_sample_type': 'Primary Tumor' } @@ -36224,11 +38584,11 @@ C3N-03792.MethArray.Green.T C3N-03792 GBM Methylation Array tumor CPT0292720006 C3N-03792.MethArray.Red.T C3N-03792 GBM Methylation Array tumor CPT0292720006 204930640083_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 42e1721b-639e-41a9-9da0-69edce27749f def05517ac31cc5ae7d13d18cec96ddd { 'aliquot_tag': 'ALQ_3047bba4', 'gdc_sample_type': 'Primary Tumor' } C3N-03792.miRNA-Seq.T C3N-03792 GBM miRNA-Seq tumor CPT0292720009 201209_UNC32-K00270_0265_AHJ55WBBXY_TGACCA_S39_L007_R1_001.unaln.bam 244313348 BAM unaligned CPTAC3 3a95afa8-0cee-4b25-ae66-30901cbe1a34 8c8174ab15872e79256ee95566f44dd3 { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor' } C3N-03792.miRNA-Seq.T.hg38 C3N-03792 GBM miRNA-Seq tumor CPT0292720009 83e55470-176d-4404-aef6-3d00b8b883b9_mirnaseq_gdc_realn.bam 273353919 BAM harmonized CPTAC3 64f2837e-ac5b-4b05-83db-cff8a7e202b3 36ecf70a4363c54b20eef640f49a758a { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor' } -C3N-03792.RNA-Seq.chimeric.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 ddeb674b-4086-4bf5-a6b0-3ce3b69c1612.rna_seq.chimeric.gdc_realn.bam 779780101 BAM chimeric harmonized CPTAC3 804b49ff-7c77-4347-8fef-43c8419ac760 29e8af6e7f3ecd1aadddadeb2d03b6b0 { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor' } -C3N-03792.RNA-Seq.genomic.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 ddeb674b-4086-4bf5-a6b0-3ce3b69c1612.rna_seq.genomic.gdc_realn.bam 8629686101 BAM genomic harmonized CPTAC3 d47c78f3-9fc1-498d-8274-b1e5a5bfeb8e d554cff37279480164c79b7787ab7c11 { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor' } -C3N-03792.RNA-Seq.R1_L003.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R1_001.fastq.gz 4211537598 FASTQ R1_L003 unaligned CPTAC3 dc36ac00-dcf4-4714-9a22-e1b19e708b23 61a607b7d255f541e9c5b6f656a0be25 { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor' } -C3N-03792.RNA-Seq.R2_L003.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R2_001.fastq.gz 4697922147 FASTQ R2_L003 unaligned CPTAC3 a7b201e1-89f6-4622-b6d8-a6271f6ab253 a0f10daed3f37e74ae2c5b7b15f29aee { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor' } -C3N-03792.RNA-Seq.transcriptome.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 ddeb674b-4086-4bf5-a6b0-3ce3b69c1612.rna_seq.transcriptome.gdc_realn.bam 8242890032 BAM transcriptome harmonized CPTAC3 7abbdcb9-2516-4d8b-8446-ee0b4eedf9bd e5c514ab9dd429a96f7ba61e39c966c4 { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor' } +C3N-03792.RNA-Seq.chimeric.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.chimeric.gdc_realn.bam 779969154 BAM chimeric harmonized CPTAC3 ccf89515-8469-45ac-8aac-2c03c029a903 ee2070cdd063419b586d65eee2b6aec0 { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor' } +C3N-03792.RNA-Seq.genomic.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.genomic.gdc_realn.bam 8634408522 BAM genomic harmonized CPTAC3 d32ab761-f74c-4264-b248-f792d99173e5 35966c147e5440caa1b61013f79483a3 { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor' } +C3N-03792.RNA-Seq.R1_L003.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R1_001.fastq.gz 4211537598 FASTQ R1_L003 unaligned CPTAC3 dc36ac00-dcf4-4714-9a22-e1b19e708b23 61a607b7d255f541e9c5b6f656a0be25 { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03792.RNA-Seq.R2_L003.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R2_001.fastq.gz 4697922147 FASTQ R2_L003 unaligned CPTAC3 a7b201e1-89f6-4622-b6d8-a6271f6ab253 a0f10daed3f37e74ae2c5b7b15f29aee { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-03792.RNA-Seq.transcriptome.T.hg38 C3N-03792 GBM RNA-Seq tumor CPT0292720009 1bcf2631-5447-4e4f-bbac-c43dcc55131e.rna_seq.transcriptome.gdc_realn.bam 9436978940 BAM transcriptome harmonized CPTAC3 56f182b1-225f-4cf7-8c05-bd42c91609b5 e62e82dfe41ff3a02c6030b8f455690a { 'aliquot_tag': 'ALQ_a0f8a635', 'gdc_sample_type': 'Primary Tumor' } C3N-03792.WGS.N C3N-03792 GBM WGS blood_normal CPT0292740002 CPT0292740002.WholeGenome.RP-2158.bam 26554543598 BAM aligned CPTAC3 9f010cbf-7023-41b0-b6d8-60d9f7ddc4c4 89b222f52c79b6526d36d48ec8b6417f { 'aliquot_tag': 'ALQ_b86a8a1d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03792.WGS.N.hg38 C3N-03792 GBM WGS blood_normal CPT0292740002 3d7cbf18-a043-454f-8905-cd5f885c8585_wgs_gdc_realn.bam 82016915053 BAM harmonized CPTAC3 c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6 b6ad168816423f3dd004758f59764d6f { 'aliquot_tag': 'ALQ_b86a8a1d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03792.WGS.T C3N-03792 GBM WGS tumor CPT0292720006 CPT0292720006.WholeGenome.RP-2158.bam 24306496119 BAM aligned CPTAC3 53615a7a-6378-4b4f-804c-266c02f512f1 7aee45e623770016561c477b8774c8c3 { 'aliquot_tag': 'ALQ_3047bba4', 'gdc_sample_type': 'Primary Tumor' } @@ -36241,11 +38601,11 @@ C3N-03796.MethArray.Green.T C3N-03796 GBM Methylation Array tumor CPT0285160006 C3N-03796.MethArray.Red.T C3N-03796 GBM Methylation Array tumor CPT0285160006 204930640082_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 1b6cc960-ee6a-438a-858a-ef3fcd464304 e62b66b0649b8fdde0624bf2df96d814 { 'aliquot_tag': 'ALQ_1a93c069', 'gdc_sample_type': 'Primary Tumor' } C3N-03796.miRNA-Seq.T C3N-03796 GBM miRNA-Seq tumor CPT0285160009 201209_UNC32-K00270_0265_AHJ55WBBXY_TTAGGC_S40_L007_R1_001.unaln.bam 218247021 BAM unaligned CPTAC3 c8ea651a-1acd-4d2d-9eeb-ba9b6b431dba da3281ca424a165f206878cc53ad5d31 { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor' } C3N-03796.miRNA-Seq.T.hg38 C3N-03796 GBM miRNA-Seq tumor CPT0285160009 405473ee-4448-4b51-a15e-3f161b90d61b_mirnaseq_gdc_realn.bam 243404378 BAM harmonized CPTAC3 1605bf51-0676-46de-b9e0-3a010f67e1db 39d8b84a38546962c340b56a8360908a { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03796.RNA-Seq.chimeric.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 e10b8f2c-5995-46e3-ae32-86bf7c807773.rna_seq.chimeric.gdc_realn.bam 860034440 BAM chimeric harmonized CPTAC3 25c9ee46-95ac-45c6-81f7-25bab3caa383 deb484fbbc9e534444c9f5445fe4e43f { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03796.RNA-Seq.genomic.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 e10b8f2c-5995-46e3-ae32-86bf7c807773.rna_seq.genomic.gdc_realn.bam 12050085530 BAM genomic harmonized CPTAC3 e935d295-97b5-4d35-95af-4e173ffba7fb e3b1de8be9235b285234cfbc17156685 { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03796.RNA-Seq.R1_L003.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R1_001.fastq.gz 5946520512 FASTQ R1_L003 unaligned CPTAC3 b454290d-cc02-4dba-9054-63f52ec8be2c da3b180947ae187d9f4913ac73b86a7e { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03796.RNA-Seq.R2_L003.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R2_001.fastq.gz 6290102156 FASTQ R2_L003 unaligned CPTAC3 a8e13d55-81ac-4ea7-bdf8-4113326e7051 43fc642d3589af3fbc6fcefddf6b6ff3 { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03796.RNA-Seq.transcriptome.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 e10b8f2c-5995-46e3-ae32-86bf7c807773.rna_seq.transcriptome.gdc_realn.bam 11542142003 BAM transcriptome harmonized CPTAC3 d9c92020-5474-49a3-b52c-f69dd3c5d7e3 0235172e31a30e7684fa882a29428260 { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor' } +C3N-03796.RNA-Seq.chimeric.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 16f12031-c4a4-46e1-98a2-2c20dbadf3d9.rna_seq.chimeric.gdc_realn.bam 860171610 BAM chimeric harmonized CPTAC3 d43e6ae8-74e0-4cb9-8220-f709d0672c9b ef3644e3a47c5c8ab447a9168c364038 { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor' } +C3N-03796.RNA-Seq.genomic.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 16f12031-c4a4-46e1-98a2-2c20dbadf3d9.rna_seq.genomic.gdc_realn.bam 12060009459 BAM genomic harmonized CPTAC3 ae9438f6-91dd-4097-b5b5-d042c7453049 dd5c43d8e6c1ce0b5ca33e119b379b88 { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor' } +C3N-03796.RNA-Seq.R1_L003.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R1_001.fastq.gz 5946520512 FASTQ R1_L003 unaligned CPTAC3 b454290d-cc02-4dba-9054-63f52ec8be2c da3b180947ae187d9f4913ac73b86a7e { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03796.RNA-Seq.R2_L003.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R2_001.fastq.gz 6290102156 FASTQ R2_L003 unaligned CPTAC3 a8e13d55-81ac-4ea7-bdf8-4113326e7051 43fc642d3589af3fbc6fcefddf6b6ff3 { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-03796.RNA-Seq.transcriptome.T.hg38 C3N-03796 GBM RNA-Seq tumor CPT0285160009 16f12031-c4a4-46e1-98a2-2c20dbadf3d9.rna_seq.transcriptome.gdc_realn.bam 13364653290 BAM transcriptome harmonized CPTAC3 5b0d57a9-1278-4895-972b-47b5ddab33b0 c3c22f672159d7d3abd94bd152dadb76 { 'aliquot_tag': 'ALQ_8a2cddf8', 'gdc_sample_type': 'Primary Tumor' } C3N-03796.WGS.N C3N-03796 GBM WGS blood_normal CPT0285170002 CPT0285170002.WholeGenome.RP-2158.bam 26251928465 BAM aligned CPTAC3 0886d2a8-bb29-46eb-98f3-46981d11faf8 e4159fbe70eac8dd22a81cc854a476b9 { 'aliquot_tag': 'ALQ_209e2dc0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03796.WGS.N.hg38 C3N-03796 GBM WGS blood_normal CPT0285170002 108e1690-f144-4cef-a077-4bf4a30f3205_wgs_gdc_realn.bam 75789850346 BAM harmonized CPTAC3 44090d4f-41a1-4a1c-840a-f1c20832adde 6124b6309417a093df21c6587dc921b9 { 'aliquot_tag': 'ALQ_209e2dc0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03796.WGS.T C3N-03796 GBM WGS tumor CPT0285160006 CPT0285160006.WholeGenome.RP-2158.bam 19793089386 BAM aligned CPTAC3 79fd3ccf-6a9f-403d-9bc8-55212dc9ad1a 446a1f2dfb79766993216a4de9d98a8a { 'aliquot_tag': 'ALQ_1a93c069', 'gdc_sample_type': 'Primary Tumor' } @@ -36258,11 +38618,11 @@ C3N-03797.MethArray.Green.T C3N-03797 GBM Methylation Array tumor CPT0285180007 C3N-03797.MethArray.Red.T C3N-03797 GBM Methylation Array tumor CPT0285180007 204367470127_R02C01_Red.idat 13677892 IDAT Red NA CPTAC3 95850a31-5aff-402d-bbf2-dc2477ef5d54 5736191af39a7966368b996ce6130960 { 'aliquot_tag': 'ALQ_d2a44e9e', 'gdc_sample_type': 'Primary Tumor' } C3N-03797.miRNA-Seq.T C3N-03797 GBM miRNA-Seq tumor CPT0285180013 200403_UNC31-K00269_0274_AHCF7GBBXY_TATAAT_S20_L001_R1_001.unaln.bam 232799984 BAM unaligned CPTAC3 83d7e3cc-9300-442b-8d38-4359db921f46 a0e1bbf76c3a11bf8c58a26939b0c577 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor' } C3N-03797.miRNA-Seq.T.hg38 C3N-03797 GBM miRNA-Seq tumor CPT0285180013 bb234d6a-efd6-4e21-ac76-757818f99f98_mirnaseq_gdc_realn.bam 251406345 BAM harmonized CPTAC3 24ac0596-02b4-4e6f-be96-aca82d40294f 9d09f3c2af288eebb19b1b710cf2f713 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor' } -C3N-03797.RNA-Seq.chimeric.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 00bc7b27-8e28-4744-b44c-d33d5a7393e2.rna_seq.chimeric.gdc_realn.bam 23217581 BAM chimeric harmonized CPTAC3 3a5f1112-0497-40a3-bcec-744cba47d7d0 c999c86af6d44726c130d15117de2935 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor' } -C3N-03797.RNA-Seq.genomic.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 00bc7b27-8e28-4744-b44c-d33d5a7393e2.rna_seq.genomic.gdc_realn.bam 5976167291 BAM genomic harmonized CPTAC3 8cffef0d-cfd7-4699-a317-b199b3bbb85f 7bc76fde75314b1abdbd87c9b4e340e9 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor' } -C3N-03797.RNA-Seq.R1_L004.T C3N-03797 GBM RNA-Seq tumor CPT0285180013 200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R1_001.fastq.gz 2749145746 FASTQ R1_L004 unaligned CPTAC3 ed5077a5-706a-4d83-a70f-6ec809c30895 d368f649f1a0eaf81a5e439a3ac25d08 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor' } -C3N-03797.RNA-Seq.R2_L004.T C3N-03797 GBM RNA-Seq tumor CPT0285180013 200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R2_001.fastq.gz 3139697205 FASTQ R2_L004 unaligned CPTAC3 4e0d0413-eaf2-4b81-9784-5f28d36b9eb3 73746e532f724f0f9cf7042b01af74a4 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor' } -C3N-03797.RNA-Seq.transcriptome.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 00bc7b27-8e28-4744-b44c-d33d5a7393e2.rna_seq.transcriptome.gdc_realn.bam 5799685146 BAM transcriptome harmonized CPTAC3 e5c16a23-8647-4e2a-8839-834252d5e6ca 579a475a94fbddae67ab1013c08070b1 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor' } +C3N-03797.RNA-Seq.chimeric.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 32efa7e7-4263-47f6-ad05-f96b45c5c8af.rna_seq.chimeric.gdc_realn.bam 23194323 BAM chimeric harmonized CPTAC3 baf59b82-2cd1-40d7-ad73-4de9e29c5496 c076f80477c479626b52ac37da973afe { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor' } +C3N-03797.RNA-Seq.genomic.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 32efa7e7-4263-47f6-ad05-f96b45c5c8af.rna_seq.genomic.gdc_realn.bam 5976909642 BAM genomic harmonized CPTAC3 52b60043-0b24-4968-989d-27507c80dee5 860f3e34809cf73e762c43a5e624b420 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor' } +C3N-03797.RNA-Seq.R1_L004.T C3N-03797 GBM RNA-Seq tumor CPT0285180013 200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R1_001.fastq.gz 2749145746 FASTQ R1_L004 unaligned CPTAC3 ed5077a5-706a-4d83-a70f-6ec809c30895 d368f649f1a0eaf81a5e439a3ac25d08 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03797.RNA-Seq.R2_L004.T C3N-03797 GBM RNA-Seq tumor CPT0285180013 200129_UNC31-K00269_0261_AHG2CLBBXY_GGAGCGTC-GTCCGTGC_S4_L004_R2_001.fastq.gz 3139697205 FASTQ R2_L004 unaligned CPTAC3 4e0d0413-eaf2-4b81-9784-5f28d36b9eb3 73746e532f724f0f9cf7042b01af74a4 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03797.RNA-Seq.transcriptome.T.hg38 C3N-03797 GBM RNA-Seq tumor CPT0285180013 32efa7e7-4263-47f6-ad05-f96b45c5c8af.rna_seq.transcriptome.gdc_realn.bam 6630470859 BAM transcriptome harmonized CPTAC3 70896e31-3dc7-4512-bba7-8399a0f76b5f b8449876395680e501a8984699806c98 { 'aliquot_tag': 'ALQ_ccd2bbc6', 'gdc_sample_type': 'Primary Tumor' } C3N-03797.WGS.N C3N-03797 GBM WGS blood_normal CPT0285210002 CPT0285210002.WholeGenome.RP-2158.bam 35420074575 BAM aligned CPTAC3 c55e1798-2951-4cf7-abe0-790e9cb25eeb 9eb84ab8cbb2de729d29a4e3634be507 { 'aliquot_tag': 'ALQ_294aaace', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03797.WGS.N.hg38 C3N-03797 GBM WGS blood_normal CPT0285210002 966c6951-4f60-4deb-8ffe-9c5954afab8e_wgs_gdc_realn.bam 109141152803 BAM harmonized CPTAC3 c8df50e5-603b-4afa-987d-53514939e122 c0ecff19fd3602fa2b85e5c976b2ee1d { 'aliquot_tag': 'ALQ_294aaace', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03797.WGS.T C3N-03797 GBM WGS tumor CPT0285180007 CPT0285180007.WholeGenome.RP-2158.bam 22181936172 BAM aligned CPTAC3 496997c1-269b-4d43-9b29-26a24935dc5e 5d4c9b29feecffd081bfc429a5fad227 { 'aliquot_tag': 'ALQ_d2a44e9e', 'gdc_sample_type': 'Primary Tumor' } @@ -36275,11 +38635,11 @@ C3N-03800.MethArray.Green.T C3N-03800 GBM Methylation Array tumor CPT0285220006 C3N-03800.MethArray.Red.T C3N-03800 GBM Methylation Array tumor CPT0285220006 204372030011_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 e909c3bc-d014-4596-aa0a-ee0c815a6aaa 4dbb7606fed65e267b928ba47f2a7dac { 'aliquot_tag': 'ALQ_69871407', 'gdc_sample_type': 'Primary Tumor' } C3N-03800.miRNA-Seq.T C3N-03800 GBM miRNA-Seq tumor CPT0285220009 200403_UNC31-K00269_0274_AHCF7GBBXY_CATGGC_S10_L001_R1_001.unaln.bam 227672680 BAM unaligned CPTAC3 91e5c405-fb73-4322-b077-c2ee020debeb a4eb3caf4804ee66eb18af1ad5721209 { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor' } C3N-03800.miRNA-Seq.T.hg38 C3N-03800 GBM miRNA-Seq tumor CPT0285220009 e4d4f4aa-b06c-4b4c-b6ec-49b28f16ad90_mirnaseq_gdc_realn.bam 249300125 BAM harmonized CPTAC3 62cde963-7d9c-42c2-a937-4aa15ca5eb2c 36b8e4dcda888ee9e79d71d8af75c43e { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor' } -C3N-03800.RNA-Seq.chimeric.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 eef9627f-d358-4f82-92e9-8ff56dd847b2.rna_seq.chimeric.gdc_realn.bam 22706325 BAM chimeric harmonized CPTAC3 76fac8fe-b912-4243-840a-0d8079312972 a75c4b808a6e9db764e5abe8be245945 { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor' } -C3N-03800.RNA-Seq.genomic.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 eef9627f-d358-4f82-92e9-8ff56dd847b2.rna_seq.genomic.gdc_realn.bam 7194841756 BAM genomic harmonized CPTAC3 e5b33759-4fc3-4d3a-b2a7-118eafb67d04 efacf9a814529f6bc4112bc0c9f9e54e { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor' } -C3N-03800.RNA-Seq.R1_L007.T C3N-03800 GBM RNA-Seq tumor CPT0285220009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R1_001.fastq.gz 3213517172 FASTQ R1_L007 unaligned CPTAC3 a6980cb7-4d87-452d-ace8-f2419ef4d665 e5a36974625fcaa1574073eaadcef995 { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor' } -C3N-03800.RNA-Seq.R2_L007.T C3N-03800 GBM RNA-Seq tumor CPT0285220009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R2_001.fastq.gz 3740273114 FASTQ R2_L007 unaligned CPTAC3 9082c1c1-5abd-4a0e-8f6e-750b5dff16e8 9a8d15f812faccb1b08f3b0d29e38b05 { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor' } -C3N-03800.RNA-Seq.transcriptome.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 eef9627f-d358-4f82-92e9-8ff56dd847b2.rna_seq.transcriptome.gdc_realn.bam 9372417349 BAM transcriptome harmonized CPTAC3 5abf192e-2169-4dfa-ae7e-b2be74a2aede a4cf96ddd26181e125779ea186412562 { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor' } +C3N-03800.RNA-Seq.chimeric.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 437aec8f-423e-47a2-b129-6b4ba114f3ee.rna_seq.chimeric.gdc_realn.bam 22689799 BAM chimeric harmonized CPTAC3 e4a56981-fa1b-4bae-8a50-e1feb1e14882 53e8b0a6fcc1a6e04140c348d6dd7dea { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor' } +C3N-03800.RNA-Seq.genomic.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 437aec8f-423e-47a2-b129-6b4ba114f3ee.rna_seq.genomic.gdc_realn.bam 7196064905 BAM genomic harmonized CPTAC3 3f4a7b13-2e41-41a4-98f5-0d7d927c063e 03b4647fccd17ca1d7a3a13ee089846a { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor' } +C3N-03800.RNA-Seq.R1_L007.T C3N-03800 GBM RNA-Seq tumor CPT0285220009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R1_001.fastq.gz 3213517172 FASTQ R1_L007 unaligned CPTAC3 a6980cb7-4d87-452d-ace8-f2419ef4d665 e5a36974625fcaa1574073eaadcef995 { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03800.RNA-Seq.R2_L007.T C3N-03800 GBM RNA-Seq tumor CPT0285220009 200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R2_001.fastq.gz 3740273114 FASTQ R2_L007 unaligned CPTAC3 9082c1c1-5abd-4a0e-8f6e-750b5dff16e8 9a8d15f812faccb1b08f3b0d29e38b05 { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03800.RNA-Seq.transcriptome.T.hg38 C3N-03800 GBM RNA-Seq tumor CPT0285220009 437aec8f-423e-47a2-b129-6b4ba114f3ee.rna_seq.transcriptome.gdc_realn.bam 10619622715 BAM transcriptome harmonized CPTAC3 378f7baa-58da-4c0f-867f-d8b969590e53 2ce0b5f48e970b15cd5e2b3eeeeab7ba { 'aliquot_tag': 'ALQ_f9380996', 'gdc_sample_type': 'Primary Tumor' } C3N-03800.WGS.N C3N-03800 GBM WGS blood_normal CPT0285250002 CPT0285250002.WholeGenome.RP-2158.bam 25301880952 BAM aligned CPTAC3 bc71a97b-75d5-48b8-a5e2-a91bf65f43df 7f673a599cb0ffd0a0f13c2bd045c2b5 { 'aliquot_tag': 'ALQ_dcca0c0e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03800.WGS.N.hg38 C3N-03800 GBM WGS blood_normal CPT0285250002 74161594-9926-4852-9bef-076363ce5266_wgs_gdc_realn.bam 75210206981 BAM harmonized CPTAC3 c6e99476-96a8-4730-89ef-026f274e9488 ff8463a5b7fe6934eba67313c65dfbfe { 'aliquot_tag': 'ALQ_dcca0c0e', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03800.WGS.T C3N-03800 GBM WGS tumor CPT0285220006 CPT0285220006.WholeGenome.RP-2158.bam 26028547154 BAM aligned CPTAC3 c7aec4a6-89a7-4e53-a246-d7c5fe230c7f c70782de695d9fb2803d8c4a55154d3e { 'aliquot_tag': 'ALQ_69871407', 'gdc_sample_type': 'Primary Tumor' } @@ -36292,11 +38652,11 @@ C3N-03802.MethArray.Green.T C3N-03802 GBM Methylation Array tumor CPT0285260006 C3N-03802.MethArray.Red.T C3N-03802 GBM Methylation Array tumor CPT0285260006 204930630109_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 fa78e33a-ded8-4ded-b582-0fc9c1d06c8e 1fafe1e362094bfa98f8b09dc9955aeb { 'aliquot_tag': 'ALQ_9c07b2c7', 'gdc_sample_type': 'Primary Tumor' } C3N-03802.miRNA-Seq.T C3N-03802 GBM miRNA-Seq tumor CPT0285260009 200403_UNC31-K00269_0274_AHCF7GBBXY_CATTTT_S11_L001_R1_001.unaln.bam 268580490 BAM unaligned CPTAC3 f7d03e56-e8df-4d26-a669-966b95205b69 ed841d0243324dd55ef11873eaf967bd { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor' } C3N-03802.miRNA-Seq.T.hg38 C3N-03802 GBM miRNA-Seq tumor CPT0285260009 39665888-ab29-4c21-9429-f4ad8cca7352_mirnaseq_gdc_realn.bam 301143625 BAM harmonized CPTAC3 a46ceaa3-5238-4715-a632-3cb7851204df 84b32c58146c4b38cd1c48a28c2eb4a8 { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor' } -C3N-03802.RNA-Seq.chimeric.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 f34848a1-a8e1-4b4e-8f79-aa8658fe0540.rna_seq.chimeric.gdc_realn.bam 29831799 BAM chimeric harmonized CPTAC3 cb06566b-33c3-42c0-ad73-5aef884939bd f41fe13e4f81de0c5f01eb1c861ad930 { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor' } -C3N-03802.RNA-Seq.genomic.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 f34848a1-a8e1-4b4e-8f79-aa8658fe0540.rna_seq.genomic.gdc_realn.bam 8278884007 BAM genomic harmonized CPTAC3 0c959ab7-3d98-4f8b-a928-6b1e93b343e2 4c89280bbfccdce0f6141725f4a0d13f { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor' } -C3N-03802.RNA-Seq.R1_L007.T C3N-03802 GBM RNA-Seq tumor CPT0285260009 200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R1_001.fastq.gz 3772884953 FASTQ R1_L007 unaligned CPTAC3 255a8e1c-dc69-4ec7-a76f-1877b51b4f23 b0a7c76277d6adc6cb0ec59607e40ee6 { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor' } -C3N-03802.RNA-Seq.R2_L007.T C3N-03802 GBM RNA-Seq tumor CPT0285260009 200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R2_001.fastq.gz 4271333174 FASTQ R2_L007 unaligned CPTAC3 f86f26d6-0c6b-4120-b71f-4fd632f2ec9c 46cbf58d39d0711362c538637932909c { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor' } -C3N-03802.RNA-Seq.transcriptome.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 f34848a1-a8e1-4b4e-8f79-aa8658fe0540.rna_seq.transcriptome.gdc_realn.bam 8991369025 BAM transcriptome harmonized CPTAC3 e4cea524-56c4-42c8-82cc-12c35763c34d cc45dc10ee44c34b43f02a3cdc69b68d { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor' } +C3N-03802.RNA-Seq.chimeric.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 87e36301-fe72-41da-bea6-759eb9c481a6.rna_seq.chimeric.gdc_realn.bam 29810577 BAM chimeric harmonized CPTAC3 822847f2-37f9-400a-b5ad-218c891e5ca8 1f4eb372646e7b9fbafaddf7ad5ad1d7 { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor' } +C3N-03802.RNA-Seq.genomic.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 87e36301-fe72-41da-bea6-759eb9c481a6.rna_seq.genomic.gdc_realn.bam 8279487166 BAM genomic harmonized CPTAC3 374499cd-c493-431e-83b8-10bfbf72d51b 6547876e98d54fd6c7fe274d35f0e84a { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor' } +C3N-03802.RNA-Seq.R1_L007.T C3N-03802 GBM RNA-Seq tumor CPT0285260009 200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R1_001.fastq.gz 3772884953 FASTQ R1_L007 unaligned CPTAC3 255a8e1c-dc69-4ec7-a76f-1877b51b4f23 b0a7c76277d6adc6cb0ec59607e40ee6 { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03802.RNA-Seq.R2_L007.T C3N-03802 GBM RNA-Seq tumor CPT0285260009 200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R2_001.fastq.gz 4271333174 FASTQ R2_L007 unaligned CPTAC3 f86f26d6-0c6b-4120-b71f-4fd632f2ec9c 46cbf58d39d0711362c538637932909c { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03802.RNA-Seq.transcriptome.T.hg38 C3N-03802 GBM RNA-Seq tumor CPT0285260009 87e36301-fe72-41da-bea6-759eb9c481a6.rna_seq.transcriptome.gdc_realn.bam 10436169930 BAM transcriptome harmonized CPTAC3 50c8eae9-7e4e-4ada-b4dd-e7bf9892dffc 7eacdfa284f9b177ada6824f4b3edd73 { 'aliquot_tag': 'ALQ_cb8af56', 'gdc_sample_type': 'Primary Tumor' } C3N-03802.WGS.N C3N-03802 GBM WGS blood_normal CPT0280960002 CPT0280960002.WholeGenome.RP-2158.bam 24435679576 BAM aligned CPTAC3 34fbd34a-ba89-4557-a705-0ced6d0cb40d 28a44f5f957c7a011ddf6e7a9bfbe06e { 'aliquot_tag': 'ALQ_a395a9ba', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03802.WGS.N.hg38 C3N-03802 GBM WGS blood_normal CPT0280960002 21f596c1-4a26-44b2-8c1b-4697d7884d6f_wgs_gdc_realn.bam 70976473049 BAM harmonized CPTAC3 d5ac4339-e870-47cf-99c4-4c305dfbcae8 59a26ed57e48b264f26e2ad6976d4c9a { 'aliquot_tag': 'ALQ_a395a9ba', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03802.WGS.T C3N-03802 GBM WGS tumor CPT0285260006 CPT0285260006.WholeGenome.RP-2158.bam 31983690940 BAM aligned CPTAC3 a04948ca-045f-407f-9740-559e4f672f82 053041f7537d16320cc9ed9fb935300a { 'aliquot_tag': 'ALQ_9c07b2c7', 'gdc_sample_type': 'Primary Tumor' } @@ -36309,11 +38669,11 @@ C3N-03810.MethArray.Green.T C3N-03810 GBM Methylation Array tumor CPT0285300006 C3N-03810.MethArray.Red.T C3N-03810 GBM Methylation Array tumor CPT0285300006 204930640083_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 ef992acc-6d0f-41bf-8739-44298c4c9a7d 88dd0cc6b840c65c919f15d42c60682e { 'aliquot_tag': 'ALQ_d81b94c2', 'gdc_sample_type': 'Primary Tumor' } C3N-03810.miRNA-Seq.T C3N-03810 GBM miRNA-Seq tumor CPT0285300009 200403_UNC31-K00269_0274_AHCF7GBBXY_CCAACA_S12_L001_R1_001.unaln.bam 232539673 BAM unaligned CPTAC3 5c539aec-8211-452a-9eac-e95a863225db b4eec004d08918547749156c9a8ee684 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor' } C3N-03810.miRNA-Seq.T.hg38 C3N-03810 GBM miRNA-Seq tumor CPT0285300009 cfb72048-a42f-4dab-aa46-f58122a9257a_mirnaseq_gdc_realn.bam 257461966 BAM harmonized CPTAC3 bdf12979-375d-45de-bb02-d9cc3c93ddb4 494c7ddf751236c7db354a7ea386e14f { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor' } -C3N-03810.RNA-Seq.chimeric.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 95ee1649-488a-4a26-8d2c-cb7561501a12.rna_seq.chimeric.gdc_realn.bam 23182441 BAM chimeric harmonized CPTAC3 c0b43e39-7683-40e6-8e98-59dbbd2d1101 c7bcf3eb70f7cdc7ae5bf1483774ad06 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor' } -C3N-03810.RNA-Seq.genomic.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 95ee1649-488a-4a26-8d2c-cb7561501a12.rna_seq.genomic.gdc_realn.bam 6546815301 BAM genomic harmonized CPTAC3 ba921b15-2e85-43f2-b048-37475e95b54f 90e790fb9d6b7d4785e6b49a8bbdce06 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor' } -C3N-03810.RNA-Seq.R1_L007.T C3N-03810 GBM RNA-Seq tumor CPT0285300009 200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R1_001.fastq.gz 3007935186 FASTQ R1_L007 unaligned CPTAC3 8fbe432e-3582-4d23-ae52-931b334f2112 7ce943248cb178104c31b5b6fcbc5b44 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor' } -C3N-03810.RNA-Seq.R2_L007.T C3N-03810 GBM RNA-Seq tumor CPT0285300009 200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R2_001.fastq.gz 3415547135 FASTQ R2_L007 unaligned CPTAC3 c9bb314d-81a3-4b4a-b3c8-935f7db8d048 ca24c94d1f399d3a988e280690b67547 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor' } -C3N-03810.RNA-Seq.transcriptome.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 95ee1649-488a-4a26-8d2c-cb7561501a12.rna_seq.transcriptome.gdc_realn.bam 7781969114 BAM transcriptome harmonized CPTAC3 ffc62ac9-f83c-45b1-b140-19fd22a251ef 055f65d8fe29f1235fd3effc880beb72 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor' } +C3N-03810.RNA-Seq.chimeric.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 ec2d0058-a74a-46f2-a30b-b840c7195da0.rna_seq.chimeric.gdc_realn.bam 23161039 BAM chimeric harmonized CPTAC3 e366aafd-72ef-4a07-9af1-12ff5e30b954 f59b7750dc3e99fde6052199dfeef226 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor' } +C3N-03810.RNA-Seq.genomic.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 ec2d0058-a74a-46f2-a30b-b840c7195da0.rna_seq.genomic.gdc_realn.bam 6547827409 BAM genomic harmonized CPTAC3 06d81ee4-b619-4231-940f-ffc784ccda41 0a2e2c4bfbc5cb1f265f15314851aac7 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor' } +C3N-03810.RNA-Seq.R1_L007.T C3N-03810 GBM RNA-Seq tumor CPT0285300009 200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R1_001.fastq.gz 3007935186 FASTQ R1_L007 unaligned CPTAC3 8fbe432e-3582-4d23-ae52-931b334f2112 7ce943248cb178104c31b5b6fcbc5b44 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03810.RNA-Seq.R2_L007.T C3N-03810 GBM RNA-Seq tumor CPT0285300009 200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R2_001.fastq.gz 3415547135 FASTQ R2_L007 unaligned CPTAC3 c9bb314d-81a3-4b4a-b3c8-935f7db8d048 ca24c94d1f399d3a988e280690b67547 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03810.RNA-Seq.transcriptome.T.hg38 C3N-03810 GBM RNA-Seq tumor CPT0285300009 ec2d0058-a74a-46f2-a30b-b840c7195da0.rna_seq.transcriptome.gdc_realn.bam 9021127186 BAM transcriptome harmonized CPTAC3 b144fc02-d13a-4abb-979e-948e36635791 0b4dd8c3495691d9a94c36d1e38ae259 { 'aliquot_tag': 'ALQ_48a48953', 'gdc_sample_type': 'Primary Tumor' } C3N-03810.WGS.N C3N-03810 GBM WGS blood_normal CPT0285330002 CPT0285330002.WholeGenome.RP-2158.bam 23111061366 BAM aligned CPTAC3 2e2c679f-7b26-4015-b244-45267471f2e2 583735d6fb9f3ff6ae6165c48a6602c9 { 'aliquot_tag': 'ALQ_98d62a0b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03810.WGS.N.hg38 C3N-03810 GBM WGS blood_normal CPT0285330002 ca49ed01-ced5-4674-95c9-b77361506dbc_wgs_gdc_realn.bam 70217504692 BAM harmonized CPTAC3 4f081684-661c-4114-87e5-3ea5943244f4 7e406f1fc1cb5552f9b4498f62a6398b { 'aliquot_tag': 'ALQ_98d62a0b', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03810.WGS.T C3N-03810 GBM WGS tumor CPT0285300006 CPT0285300006.WholeGenome.RP-2158.bam 28905896477 BAM aligned CPTAC3 1ea41311-ec81-4ccb-b505-ffe1817637e1 c07f6d3bd529760c08cb9cbd4a035ebf { 'aliquot_tag': 'ALQ_d81b94c2', 'gdc_sample_type': 'Primary Tumor' } @@ -36328,12 +38688,12 @@ C3N-03837.miRNA-Seq.A C3N-03837 HNSCC miRNA-Seq tissue_normal CPT0236640006 1902 C3N-03837.miRNA-Seq.A.hg38 C3N-03837 HNSCC miRNA-Seq tissue_normal CPT0236640006 d6191851-c4dd-4b0a-8f9a-fb2a1176dbc3_mirnaseq_gdc_realn.bam 242919448 BAM harmonized CPTAC3 cfbb1a61-1b75-41cd-8745-0ecdeb7bdf66 edce6f249524cdfe214c1e8c5fcaf356 { 'aliquot_tag': 'ALQ_11d4a57a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03837.RNA-Seq.chimeric.A.hg38 C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 6438f9b5-7635-487f-b70f-452d44a8a4a6.rna_seq.chimeric.gdc_realn.bam 58766115 BAM chimeric harmonized CPTAC3 218e278c-66c7-4a43-b421-f1116cc24137 e180282dd5bad51dac43a33cc2edad0b { 'aliquot_tag': 'ALQ_11d4a57a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03837.RNA-Seq.chimeric.T.hg38 C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 035d78f3-db08-46a3-a202-1b3bebd1b4f0.rna_seq.chimeric.gdc_realn.bam 221615835 BAM chimeric harmonized CPTAC3 468d3841-946a-4302-9c82-537f4ec88399 c50d6319690902cb8f13a9879ec2d872 { 'aliquot_tag': 'ALQ_e2b4d4b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03837.RNA-Seq.genomic.A.hg38 C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 6438f9b5-7635-487f-b70f-452d44a8a4a6.rna_seq.genomic.gdc_realn.bam 11344314559 BAM genomic harmonized CPTAC3 b6b0cdff-db19-4805-8391-fff5bec4c465 ad376b5df59b757eaf2f928e58388948 { 'aliquot_tag': 'ALQ_11d4a57a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03837.RNA-Seq.genomic.T.hg38 C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 035d78f3-db08-46a3-a202-1b3bebd1b4f0.rna_seq.genomic.gdc_realn.bam 7001857355 BAM genomic harmonized CPTAC3 46fedba3-1cc3-4b6f-a82c-7ec168ba87de 1927d5e7840ae877e8e079dc48a725ad { 'aliquot_tag': 'ALQ_e2b4d4b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03837.RNA-Seq.R1_L002.T C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3292865459 FASTQ R1_L002 unaligned CPTAC3 91df6fd0-bb82-42e3-a4cc-94acc3a2dac5 6c91ebcf6e7f386fa56f4f48762a9bd6 { 'aliquot_tag': 'ALQ_e2b4d4b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03837.RNA-Seq.R1_L003.A C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R1_001.fastq.gz 5232135560 FASTQ R1_L003 unaligned CPTAC3 7d4ad5fe-4cb8-4fd8-9c60-cfa087fb3a7c 3e370611f896ea9b7723ad642dbbd469 { 'aliquot_tag': 'ALQ_11d4a57a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03837.RNA-Seq.R2_L002.T C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3723913348 FASTQ R2_L002 unaligned CPTAC3 f0b82c84-e1cf-4703-9a71-9996f4c7149a 7c42532119f09023f1135aca231b35ff { 'aliquot_tag': 'ALQ_e2b4d4b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03837.RNA-Seq.R2_L003.A C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R2_001.fastq.gz 5292215494 FASTQ R2_L003 unaligned CPTAC3 19e36b22-9eed-4846-9fe7-ae1df2d2183d 919be9289329a92dab6df8ecab00c5b0 { 'aliquot_tag': 'ALQ_11d4a57a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03837.RNA-Seq.genomic.A.hg38 C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 6438f9b5-7635-487f-b70f-452d44a8a4a6.rna_seq.genomic.gdc_realn.bam 11344314559 BAM genomic harmonized CPTAC3 aaf2c3d0-bce4-4f1b-9bc0-b8950227b1a7 ad376b5df59b757eaf2f928e58388948 { 'aliquot_tag': 'ALQ_11d4a57a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03837.RNA-Seq.genomic.T.hg38 C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 035d78f3-db08-46a3-a202-1b3bebd1b4f0.rna_seq.genomic.gdc_realn.bam 7001857355 BAM genomic harmonized CPTAC3 01400e6b-5364-4188-8ebc-7a75b952c36e 1927d5e7840ae877e8e079dc48a725ad { 'aliquot_tag': 'ALQ_e2b4d4b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03837.RNA-Seq.R1_L002.T C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R1_001.fastq.gz 3292865459 FASTQ R1_L002 unaligned CPTAC3 91df6fd0-bb82-42e3-a4cc-94acc3a2dac5 6c91ebcf6e7f386fa56f4f48762a9bd6 { 'aliquot_tag': 'ALQ_e2b4d4b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03837.RNA-Seq.R1_L003.A C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R1_001.fastq.gz 5232135560 FASTQ R1_L003 unaligned CPTAC3 7d4ad5fe-4cb8-4fd8-9c60-cfa087fb3a7c 3e370611f896ea9b7723ad642dbbd469 { 'aliquot_tag': 'ALQ_11d4a57a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03837.RNA-Seq.R2_L002.T C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 190328_UNC31-K00269_0204_BH5F5NBBXY_GATCAG_S5_L002_R2_001.fastq.gz 3723913348 FASTQ R2_L002 unaligned CPTAC3 f0b82c84-e1cf-4703-9a71-9996f4c7149a 7c42532119f09023f1135aca231b35ff { 'aliquot_tag': 'ALQ_e2b4d4b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03837.RNA-Seq.R2_L003.A C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 190411_UNC31-K00269_0208_BH3W3KBBXY_TTATAACC-GATATCGA_S13_L003_R2_001.fastq.gz 5292215494 FASTQ R2_L003 unaligned CPTAC3 19e36b22-9eed-4846-9fe7-ae1df2d2183d 919be9289329a92dab6df8ecab00c5b0 { 'aliquot_tag': 'ALQ_11d4a57a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3N-03837.RNA-Seq.transcriptome.A.hg38 C3N-03837 HNSCC RNA-Seq tissue_normal CPT0236640006 6438f9b5-7635-487f-b70f-452d44a8a4a6.rna_seq.transcriptome.gdc_realn.bam 14336780033 BAM transcriptome harmonized CPTAC3 c5562a00-2d71-4bd2-bd03-db41dcdadaae 751ba0fc56b19c629fbe6bc2b75d018c { 'aliquot_tag': 'ALQ_11d4a57a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03837.RNA-Seq.transcriptome.T.hg38 C3N-03837 HNSCC RNA-Seq tumor CPT0236620009 035d78f3-db08-46a3-a202-1b3bebd1b4f0.rna_seq.transcriptome.gdc_realn.bam 9891991058 BAM transcriptome harmonized CPTAC3 e7c38702-2613-4880-b1f5-25b6bbd65cd8 4863b279863177112ef0cb24ad963fe9 { 'aliquot_tag': 'ALQ_e2b4d4b', 'gdc_sample_type': 'Primary Tumor' } C3N-03837.WGS.N C3N-03837 HNSCC WGS blood_normal CPT0236680002 CPT0236680002.WholeGenome.RP-1303.bam 82569751510 BAM aligned CPTAC3 97880c85-4669-44f5-88e6-4a3300504cdc a43973858f6cc59228e7a92be6c052af { 'aliquot_tag': 'ALQ_d3498c62', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36350,8 +38710,8 @@ C3N-03839.miRNA-Seq.T C3N-03839 PDA miRNA-Seq tumor CPT0236700011 190712_UNC32-K C3N-03839.miRNA-Seq.T.hg38 C3N-03839 PDA miRNA-Seq tumor CPT0236700011 5d3c4a12-3ee3-47ec-a6ca-9ed6e4184bdf_mirnaseq_gdc_realn.bam 321090712 BAM harmonized CPTAC3 b99c875c-d45d-4f35-9e62-d80c5144a65a 7950ac5eee326acf758d3ee5ce74005e { 'aliquot_tag': 'ALQ_a87774fd', 'gdc_sample_type': 'Primary Tumor' } C3N-03839.RNA-Seq.chimeric.T.hg38 C3N-03839 PDA RNA-Seq tumor CPT0236700011 8ece5ec1-88c8-4d50-942c-11be8ca9b8c9.rna_seq.chimeric.gdc_realn.bam 32431027 BAM chimeric harmonized CPTAC3 a4a24fb0-4ed0-43ee-8d03-2cab311f7a40 3b544b5466532acd9cd03c45fb386eae { 'aliquot_tag': 'ALQ_a87774fd', 'gdc_sample_type': 'Primary Tumor' } C3N-03839.RNA-Seq.genomic.T.hg38 C3N-03839 PDA RNA-Seq tumor CPT0236700011 8ece5ec1-88c8-4d50-942c-11be8ca9b8c9.rna_seq.genomic.gdc_realn.bam 8203912249 BAM genomic harmonized CPTAC3 fa27d52d-79e7-474a-a0ae-418af31657ec 445dadd14cbf4b90e3d266fd519ef99c { 'aliquot_tag': 'ALQ_a87774fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03839.RNA-Seq.R1_L002.T C3N-03839 PDA RNA-Seq tumor CPT0236700011 190621_UNC32-K00270_0185_BH7G72BBXY_ACAGGCGC-CTCTGCCT_S7_L002_R1_001.fastq.gz 3838586486 FASTQ R1_L002 unaligned CPTAC3 56fe9c85-1d66-4676-a4ae-b27a67bdb36b 2835213af45a1577aefba16d18ff8c41 { 'aliquot_tag': 'ALQ_a87774fd', 'gdc_sample_type': 'Primary Tumor' } -C3N-03839.RNA-Seq.R2_L002.T C3N-03839 PDA RNA-Seq tumor CPT0236700011 190621_UNC32-K00270_0185_BH7G72BBXY_ACAGGCGC-CTCTGCCT_S7_L002_R2_001.fastq.gz 4280739338 FASTQ R2_L002 unaligned CPTAC3 bf2313fd-9f78-485d-be5a-58bd48fe3f4f 40b110a6ffc186ad33dcf1cff91812cc { 'aliquot_tag': 'ALQ_a87774fd', 'gdc_sample_type': 'Primary Tumor' } +C3N-03839.RNA-Seq.R1_L002.T C3N-03839 PDA RNA-Seq tumor CPT0236700011 190621_UNC32-K00270_0185_BH7G72BBXY_ACAGGCGC-CTCTGCCT_S7_L002_R1_001.fastq.gz 3838586486 FASTQ R1_L002 unaligned CPTAC3 56fe9c85-1d66-4676-a4ae-b27a67bdb36b 2835213af45a1577aefba16d18ff8c41 { 'aliquot_tag': 'ALQ_a87774fd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03839.RNA-Seq.R2_L002.T C3N-03839 PDA RNA-Seq tumor CPT0236700011 190621_UNC32-K00270_0185_BH7G72BBXY_ACAGGCGC-CTCTGCCT_S7_L002_R2_001.fastq.gz 4280739338 FASTQ R2_L002 unaligned CPTAC3 bf2313fd-9f78-485d-be5a-58bd48fe3f4f 40b110a6ffc186ad33dcf1cff91812cc { 'aliquot_tag': 'ALQ_a87774fd', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-03839.RNA-Seq.transcriptome.T.hg38 C3N-03839 PDA RNA-Seq tumor CPT0236700011 8ece5ec1-88c8-4d50-942c-11be8ca9b8c9.rna_seq.transcriptome.gdc_realn.bam 11222943471 BAM transcriptome harmonized CPTAC3 721ec1e9-8e81-4efd-9c9b-28d133ac56bf 9d866fec361b326168565d14da4803c6 { 'aliquot_tag': 'ALQ_a87774fd', 'gdc_sample_type': 'Primary Tumor' } C3N-03839.WGS.N C3N-03839 PDA WGS blood_normal CPT0236770002 CPT0236770002.WholeGenome.RP-1303.bam 64401178895 BAM aligned CPTAC3 5cff73b6-f957-4eff-b739-4ee785dda967 475e52c48e9bce5e3de288d42ec478e2 { 'aliquot_tag': 'ALQ_9a45c816', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03839.WGS.N.hg38 C3N-03839 PDA WGS blood_normal CPT0236770002 1039286f-054d-4248-9d88-ea57a0168b1a_wgs_gdc_realn.bam 95852254845 BAM harmonized CPTAC3 50e458bc-fb18-4bb9-b0bc-cc0770458159 e1a484f37157edc2801157cdb184f1b1 { 'aliquot_tag': 'ALQ_9a45c816', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36369,8 +38729,8 @@ C3N-03840.miRNA-Seq.T C3N-03840 PDA miRNA-Seq tumor CPT0236780011 190712_UNC32-K C3N-03840.miRNA-Seq.T.hg38 C3N-03840 PDA miRNA-Seq tumor CPT0236780011 1651b695-c146-475c-b6fc-eeca00702fdd_mirnaseq_gdc_realn.bam 250347903 BAM harmonized CPTAC3 0f65ab84-519f-4b16-8618-f8e60ee5f319 655f1c2688fc5bb8c7b3e9d89e982ce5 { 'aliquot_tag': 'ALQ_98073f3c', 'gdc_sample_type': 'Primary Tumor' } C3N-03840.RNA-Seq.chimeric.T.hg38 C3N-03840 PDA RNA-Seq tumor CPT0236780011 712d7c9f-f3d5-457b-9c8f-9ade469f5c3f.rna_seq.chimeric.gdc_realn.bam 27361691 BAM chimeric harmonized CPTAC3 9753439b-1f63-4552-8e9c-97f1f9028745 24b253aec813f5e0966e1e5f537fd845 { 'aliquot_tag': 'ALQ_98073f3c', 'gdc_sample_type': 'Primary Tumor' } C3N-03840.RNA-Seq.genomic.T.hg38 C3N-03840 PDA RNA-Seq tumor CPT0236780011 712d7c9f-f3d5-457b-9c8f-9ade469f5c3f.rna_seq.genomic.gdc_realn.bam 7067452295 BAM genomic harmonized CPTAC3 87116042-5481-48d1-b2c7-e467bc95a332 8c1a6fabd6407ae8ec2686295518b1d8 { 'aliquot_tag': 'ALQ_98073f3c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03840.RNA-Seq.R1_L006.T C3N-03840 PDA RNA-Seq tumor CPT0236780011 190702_UNC32-K00270_0187_AH7FK2BBXY_CTAGCGCT-GTGTAGAC_S19_L006_R1_001.fastq.gz 3427969856 FASTQ R1_L006 unaligned CPTAC3 0f99208f-7c99-4c60-9700-e2f270009f77 ebd484d66dedde60c84bffce2580d11a { 'aliquot_tag': 'ALQ_98073f3c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03840.RNA-Seq.R2_L006.T C3N-03840 PDA RNA-Seq tumor CPT0236780011 190702_UNC32-K00270_0187_AH7FK2BBXY_CTAGCGCT-GTGTAGAC_S19_L006_R2_001.fastq.gz 3695037407 FASTQ R2_L006 unaligned CPTAC3 08696071-b690-42cc-97dd-ea0d068a034b 76ab7a6835614ef09c6db515f7076463 { 'aliquot_tag': 'ALQ_98073f3c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03840.RNA-Seq.R1_L006.T C3N-03840 PDA RNA-Seq tumor CPT0236780011 190702_UNC32-K00270_0187_AH7FK2BBXY_CTAGCGCT-GTGTAGAC_S19_L006_R1_001.fastq.gz 3427969856 FASTQ R1_L006 unaligned CPTAC3 0f99208f-7c99-4c60-9700-e2f270009f77 ebd484d66dedde60c84bffce2580d11a { 'aliquot_tag': 'ALQ_98073f3c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03840.RNA-Seq.R2_L006.T C3N-03840 PDA RNA-Seq tumor CPT0236780011 190702_UNC32-K00270_0187_AH7FK2BBXY_CTAGCGCT-GTGTAGAC_S19_L006_R2_001.fastq.gz 3695037407 FASTQ R2_L006 unaligned CPTAC3 08696071-b690-42cc-97dd-ea0d068a034b 76ab7a6835614ef09c6db515f7076463 { 'aliquot_tag': 'ALQ_98073f3c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-03840.RNA-Seq.transcriptome.T.hg38 C3N-03840 PDA RNA-Seq tumor CPT0236780011 712d7c9f-f3d5-457b-9c8f-9ade469f5c3f.rna_seq.transcriptome.gdc_realn.bam 9810008498 BAM transcriptome harmonized CPTAC3 b61d0590-7642-4766-b18d-0fad143de133 ab952a2686607489a432d397b215598e { 'aliquot_tag': 'ALQ_98073f3c', 'gdc_sample_type': 'Primary Tumor' } C3N-03840.WGS.N C3N-03840 PDA WGS blood_normal CPT0236840002 CPT0236840002.WholeGenome.RP-1303.bam 66186275812 BAM aligned CPTAC3 c16f0ba9-ca9d-4db4-baa5-ad30fe6317e2 4e49d57e72df91a71574c49280673ad6 { 'aliquot_tag': 'ALQ_2cb30013', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03840.WGS.N.hg38 C3N-03840 PDA WGS blood_normal CPT0236840002 dbcb1072-3b41-4a75-9ba1-267a7b85db21_wgs_gdc_realn.bam 97670561709 BAM harmonized CPTAC3 9a21e1aa-6072-40a7-9ecd-453e7ba0ff63 d2a7f74aefb86497c5b9c8016c7683b8 { 'aliquot_tag': 'ALQ_2cb30013', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36393,11 +38753,11 @@ C3N-03841.miRNA-Seq.T.hg38 C3N-03841 HNSCC miRNA-Seq tumor CPT0236850010 c8e7981 C3N-03841.RNA-Seq.chimeric.A.hg38 C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 5ce1c097-df52-480d-b88e-26b692d4b351.rna_seq.chimeric.gdc_realn.bam 43529745 BAM chimeric harmonized CPTAC3 b7b8a0e6-b372-419e-af4a-aace2e1b76b3 b789ca368d4043794017efa44dc07e27 { 'aliquot_tag': 'ALQ_6c7ebeda', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03841.RNA-Seq.chimeric.T.hg38 C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 e23d4b77-1701-4977-a23c-947b3021f1d9.rna_seq.chimeric.gdc_realn.bam 208487017 BAM chimeric harmonized CPTAC3 999d6285-ed76-403e-9e03-9c1f84a77b6f 186d3d30cc13a43949390e5482d49d35 { 'aliquot_tag': 'ALQ_e6c679ce', 'gdc_sample_type': 'Primary Tumor' } C3N-03841.RNA-Seq.genomic.A.hg38 C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 5ce1c097-df52-480d-b88e-26b692d4b351.rna_seq.genomic.gdc_realn.bam 7783288816 BAM genomic harmonized CPTAC3 bd7cca37-b5d3-4e4b-9662-772ffef3ecd6 fd7411ced6632295c9d10be9bb63e879 { 'aliquot_tag': 'ALQ_6c7ebeda', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03841.RNA-Seq.genomic.T.hg38 C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 e23d4b77-1701-4977-a23c-947b3021f1d9.rna_seq.genomic.gdc_realn.bam 7702449243 BAM genomic harmonized CPTAC3 cf583286-b35e-4104-9cd7-dc8005f2095d 697815d414574159ed48fe17090d47df { 'aliquot_tag': 'ALQ_e6c679ce', 'gdc_sample_type': 'Primary Tumor' } -C3N-03841.RNA-Seq.R1_L002.T C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 3549375907 FASTQ R1_L002 unaligned CPTAC3 83a78534-e8d3-4666-bea6-4e3b400853bf a9f424a6ed6dbf6ffeda183bdd6422ef { 'aliquot_tag': 'ALQ_e6c679ce', 'gdc_sample_type': 'Primary Tumor' } -C3N-03841.RNA-Seq.R1_L003.A C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGACTTGG-CGCAGACG_S15_L003_R1_001.fastq.gz 3550970262 FASTQ R1_L003 unaligned CPTAC3 10c05c73-0d70-475e-bac0-5dcf5bf85d17 0b52bebe65785a8e3180fb9d54c474bf { 'aliquot_tag': 'ALQ_6c7ebeda', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03841.RNA-Seq.R2_L002.T C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 3973248182 FASTQ R2_L002 unaligned CPTAC3 1cb6ed3c-8679-4136-92fb-c67fb5769e88 e6cf5fcbc775d90ac1775b47729aa213 { 'aliquot_tag': 'ALQ_e6c679ce', 'gdc_sample_type': 'Primary Tumor' } -C3N-03841.RNA-Seq.R2_L003.A C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGACTTGG-CGCAGACG_S15_L003_R2_001.fastq.gz 3947291636 FASTQ R2_L003 unaligned CPTAC3 da96e246-ab71-40a5-b74e-9866c2337b60 14415981bbb4fffe522db298a24f807d { 'aliquot_tag': 'ALQ_6c7ebeda', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03841.RNA-Seq.genomic.T.hg38 C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 e23d4b77-1701-4977-a23c-947b3021f1d9.rna_seq.genomic.gdc_realn.bam 7702449243 BAM genomic harmonized CPTAC3 0240e958-1701-4c93-bf5c-cb30247c36de 697815d414574159ed48fe17090d47df { 'aliquot_tag': 'ALQ_e6c679ce', 'gdc_sample_type': 'Primary Tumor' } +C3N-03841.RNA-Seq.R1_L002.T C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L002_R1_001.fastq.gz 3549375907 FASTQ R1_L002 unaligned CPTAC3 83a78534-e8d3-4666-bea6-4e3b400853bf a9f424a6ed6dbf6ffeda183bdd6422ef { 'aliquot_tag': 'ALQ_e6c679ce', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03841.RNA-Seq.R1_L003.A C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGACTTGG-CGCAGACG_S15_L003_R1_001.fastq.gz 3550970262 FASTQ R1_L003 unaligned CPTAC3 10c05c73-0d70-475e-bac0-5dcf5bf85d17 0b52bebe65785a8e3180fb9d54c474bf { 'aliquot_tag': 'ALQ_6c7ebeda', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03841.RNA-Seq.R2_L002.T C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 190328_UNC31-K00269_0204_BH5F5NBBXY_TAGCTT_S6_L002_R2_001.fastq.gz 3973248182 FASTQ R2_L002 unaligned CPTAC3 1cb6ed3c-8679-4136-92fb-c67fb5769e88 e6cf5fcbc775d90ac1775b47729aa213 { 'aliquot_tag': 'ALQ_e6c679ce', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03841.RNA-Seq.R2_L003.A C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 190411_UNC31-K00269_0208_BH3W3KBBXY_GGACTTGG-CGCAGACG_S15_L003_R2_001.fastq.gz 3947291636 FASTQ R2_L003 unaligned CPTAC3 da96e246-ab71-40a5-b74e-9866c2337b60 14415981bbb4fffe522db298a24f807d { 'aliquot_tag': 'ALQ_6c7ebeda', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3N-03841.RNA-Seq.transcriptome.A.hg38 C3N-03841 HNSCC RNA-Seq tissue_normal CPT0236870006 5ce1c097-df52-480d-b88e-26b692d4b351.rna_seq.transcriptome.gdc_realn.bam 10637905808 BAM transcriptome harmonized CPTAC3 4e36c269-6112-4763-aafd-7c5d647033ae 0e176cb22f0daf1f83555d404d301902 { 'aliquot_tag': 'ALQ_6c7ebeda', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03841.RNA-Seq.transcriptome.T.hg38 C3N-03841 HNSCC RNA-Seq tumor CPT0236850010 e23d4b77-1701-4977-a23c-947b3021f1d9.rna_seq.transcriptome.gdc_realn.bam 9604896690 BAM transcriptome harmonized CPTAC3 5fc39563-d7e7-4449-a5fa-f2240198ee6c b2aeb5f0165f840e3795655d23b4419a { 'aliquot_tag': 'ALQ_e6c679ce', 'gdc_sample_type': 'Primary Tumor' } C3N-03841.WGS.N C3N-03841 HNSCC WGS blood_normal CPT0236910002 CPT0236910002.WholeGenome.RP-1303.bam 73153340369 BAM aligned CPTAC3 c594ebc8-21d7-477d-a1ba-db3ea322f000 0d158c28d56b5f5938e3e9e7142ad212 { 'aliquot_tag': 'ALQ_2f0f5cc6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36420,12 +38780,12 @@ C3N-03848.miRNA-Seq.T C3N-03848 LSCC miRNA-Seq tumor CPT0237060010 190206_UNC31- C3N-03848.miRNA-Seq.T.hg38 C3N-03848 LSCC miRNA-Seq tumor CPT0237060010 bc02b4cf-7071-4f2d-8c58-b57d8d5f6a93_mirnaseq_gdc_realn.bam 202289915 BAM harmonized CPTAC3 6f4d76e0-1e65-4084-9af5-25159cea6141 fc6480918f8cf2ee46920d8c43d78649 { 'aliquot_tag': 'ALQ_eb428ac7', 'gdc_sample_type': 'Primary Tumor' } C3N-03848.RNA-Seq.chimeric.A.hg38 C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 4f51011c-4b50-419d-b18c-ea503b2afc75.rna_seq.chimeric.gdc_realn.bam 307226795 BAM chimeric harmonized CPTAC3 33167ba4-13a7-4251-bc6d-810679cd0d3a e4c32c8319b332732487e1422fdd5629 { 'aliquot_tag': 'ALQ_a40aa0d2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03848.RNA-Seq.chimeric.T.hg38 C3N-03848 LSCC RNA-Seq tumor CPT0237060010 d7d328a3-18bc-4106-88be-cf62e1be9d45.rna_seq.chimeric.gdc_realn.bam 147531806 BAM chimeric harmonized CPTAC3 d6a10a6a-0dea-476e-8eb5-6bfaf6271c8e aec5c92921048eca2774afec265b8a9f { 'aliquot_tag': 'ALQ_eb428ac7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03848.RNA-Seq.genomic.A.hg38 C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 4f51011c-4b50-419d-b18c-ea503b2afc75.rna_seq.genomic.gdc_realn.bam 8345081835 BAM genomic harmonized CPTAC3 d518c430-edbf-49a8-b2f2-8ebad26b5afc 258703702796a2636f9ea55cd770b1f8 { 'aliquot_tag': 'ALQ_a40aa0d2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03848.RNA-Seq.genomic.T.hg38 C3N-03848 LSCC RNA-Seq tumor CPT0237060010 d7d328a3-18bc-4106-88be-cf62e1be9d45.rna_seq.genomic.gdc_realn.bam 8160515905 BAM genomic harmonized CPTAC3 cf30d235-c9c9-4fdc-8582-5c5cff92713b 69a68ade426830f3ae65da72e4747832 { 'aliquot_tag': 'ALQ_eb428ac7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03848.RNA-Seq.R1_L003.T C3N-03848 LSCC RNA-Seq tumor CPT0237060010 190208_UNC32-K00270_0146_BH3V2WBBXY_ATGTCA_S9_L003_R1_001.fastq.gz 3588982693 FASTQ R1_L003 unaligned CPTAC3 caf344ba-b89a-4c5e-8f44-e3e7699a7988 ec2ab3d87523c790d111824cc3219652 { 'aliquot_tag': 'ALQ_eb428ac7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03848.RNA-Seq.R1_L006.A C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 190208_UNC32-K00270_0146_BH3V2WBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 3783211123 FASTQ R1_L006 unaligned CPTAC3 de23d600-f38b-451b-a74e-3e4de1d7d127 83f27879083cd98459ad0ba44de85154 { 'aliquot_tag': 'ALQ_a40aa0d2', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03848.RNA-Seq.R2_L003.T C3N-03848 LSCC RNA-Seq tumor CPT0237060010 190208_UNC32-K00270_0146_BH3V2WBBXY_ATGTCA_S9_L003_R2_001.fastq.gz 3900758585 FASTQ R2_L003 unaligned CPTAC3 ff9867f3-3c78-4a82-9870-5e942377c57a 11716e471407667e886d58c2ca643a8c { 'aliquot_tag': 'ALQ_eb428ac7', 'gdc_sample_type': 'Primary Tumor' } -C3N-03848.RNA-Seq.R2_L006.A C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 190208_UNC32-K00270_0146_BH3V2WBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 4239869487 FASTQ R2_L006 unaligned CPTAC3 21d3047a-3217-4c7d-bd89-2b5473199e14 f3c4a2b838f998856e2f36c756ca5579 { 'aliquot_tag': 'ALQ_a40aa0d2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03848.RNA-Seq.genomic.A.hg38 C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 4f51011c-4b50-419d-b18c-ea503b2afc75.rna_seq.genomic.gdc_realn.bam 8345081835 BAM genomic harmonized CPTAC3 a0fe70a6-83c0-4e65-a68d-363e48568666 258703702796a2636f9ea55cd770b1f8 { 'aliquot_tag': 'ALQ_a40aa0d2', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03848.RNA-Seq.genomic.T.hg38 C3N-03848 LSCC RNA-Seq tumor CPT0237060010 d7d328a3-18bc-4106-88be-cf62e1be9d45.rna_seq.genomic.gdc_realn.bam 8160515905 BAM genomic harmonized CPTAC3 b034869e-b2ce-4735-9ae5-19d9e0dc4327 69a68ade426830f3ae65da72e4747832 { 'aliquot_tag': 'ALQ_eb428ac7', 'gdc_sample_type': 'Primary Tumor' } +C3N-03848.RNA-Seq.R1_L003.T C3N-03848 LSCC RNA-Seq tumor CPT0237060010 190208_UNC32-K00270_0146_BH3V2WBBXY_ATGTCA_S9_L003_R1_001.fastq.gz 3588982693 FASTQ R1_L003 unaligned CPTAC3 caf344ba-b89a-4c5e-8f44-e3e7699a7988 ec2ab3d87523c790d111824cc3219652 { 'aliquot_tag': 'ALQ_eb428ac7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03848.RNA-Seq.R1_L006.A C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 190208_UNC32-K00270_0146_BH3V2WBBXY_ACAGTG_S23_L006_R1_001.fastq.gz 3783211123 FASTQ R1_L006 unaligned CPTAC3 de23d600-f38b-451b-a74e-3e4de1d7d127 83f27879083cd98459ad0ba44de85154 { 'aliquot_tag': 'ALQ_a40aa0d2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03848.RNA-Seq.R2_L003.T C3N-03848 LSCC RNA-Seq tumor CPT0237060010 190208_UNC32-K00270_0146_BH3V2WBBXY_ATGTCA_S9_L003_R2_001.fastq.gz 3900758585 FASTQ R2_L003 unaligned CPTAC3 ff9867f3-3c78-4a82-9870-5e942377c57a 11716e471407667e886d58c2ca643a8c { 'aliquot_tag': 'ALQ_eb428ac7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-03848.RNA-Seq.R2_L006.A C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 190208_UNC32-K00270_0146_BH3V2WBBXY_ACAGTG_S23_L006_R2_001.fastq.gz 4239869487 FASTQ R2_L006 unaligned CPTAC3 21d3047a-3217-4c7d-bd89-2b5473199e14 f3c4a2b838f998856e2f36c756ca5579 { 'aliquot_tag': 'ALQ_a40aa0d2', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-03848.RNA-Seq.transcriptome.A.hg38 C3N-03848 LSCC RNA-Seq tissue_normal CPT0237080006 4f51011c-4b50-419d-b18c-ea503b2afc75.rna_seq.transcriptome.gdc_realn.bam 8269488321 BAM transcriptome harmonized CPTAC3 735224a4-2ba4-453c-aced-2ff0bdf139aa d95144b0923447176735f40919bf6a55 { 'aliquot_tag': 'ALQ_a40aa0d2', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03848.RNA-Seq.transcriptome.T.hg38 C3N-03848 LSCC RNA-Seq tumor CPT0237060010 d7d328a3-18bc-4106-88be-cf62e1be9d45.rna_seq.transcriptome.gdc_realn.bam 8636811657 BAM transcriptome harmonized CPTAC3 d39b6fdf-886d-4de1-82ab-96391dce1c2b 898538bc099dab45f820afd6475240d0 { 'aliquot_tag': 'ALQ_eb428ac7', 'gdc_sample_type': 'Primary Tumor' } C3N-03848.WGS.N C3N-03848 LSCC WGS blood_normal CPT0237120002 CPT0237120002.WholeGenome.RP-1303.bam 55342381377 BAM aligned CPTAC3 e61169b2-2da7-4f6e-ae92-b99bdd5382f0 1ee9fb0970de9c9fe2c0b78f260eaa6d { 'aliquot_tag': 'ALQ_228bafcf', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36448,12 +38808,12 @@ C3N-03849.miRNA-Seq.T C3N-03849 HNSCC miRNA-Seq tumor CPT0237130010 190228_UNC32 C3N-03849.miRNA-Seq.T.hg38 C3N-03849 HNSCC miRNA-Seq tumor CPT0237130010 dae74986-4350-4915-9e62-860604ac81f1_mirnaseq_gdc_realn.bam 232818892 BAM harmonized CPTAC3 dbb5f042-b814-4dc9-bc8d-1c4a17e6ec71 0ee757a4d4af70ac4de62f36c3a8beb4 { 'aliquot_tag': 'ALQ_e8fed612', 'gdc_sample_type': 'Primary Tumor' } C3N-03849.RNA-Seq.chimeric.A.hg38 C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 10f7642e-5e43-49c8-b9a2-b3b67e87a286.rna_seq.chimeric.gdc_realn.bam 42250271 BAM chimeric harmonized CPTAC3 a83d2a31-9285-493f-8c8c-e57dcef53e5e 59afc138595dcf46ffbd33c3a2db159e { 'aliquot_tag': 'ALQ_97c6b7c6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03849.RNA-Seq.chimeric.T.hg38 C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 dc96d36d-3343-47cb-8111-f75e97f21539.rna_seq.chimeric.gdc_realn.bam 213785879 BAM chimeric harmonized CPTAC3 53e19a78-bbe5-418f-92b1-abccb59e5d35 46936f8a8cc36e1d91a727588d3e2dde { 'aliquot_tag': 'ALQ_e8fed612', 'gdc_sample_type': 'Primary Tumor' } -C3N-03849.RNA-Seq.genomic.A.hg38 C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 10f7642e-5e43-49c8-b9a2-b3b67e87a286.rna_seq.genomic.gdc_realn.bam 9031546935 BAM genomic harmonized CPTAC3 b6cc9a36-5d3a-488a-9aaa-e1f276e25fe1 9edb73100bbd75dcfc885d21175942a9 { 'aliquot_tag': 'ALQ_97c6b7c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03849.RNA-Seq.genomic.T.hg38 C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 dc96d36d-3343-47cb-8111-f75e97f21539.rna_seq.genomic.gdc_realn.bam 8379285734 BAM genomic harmonized CPTAC3 285f1cf3-c7e1-41fc-95f5-88fad0d66f6f e34b677370843efad45fcd0e961957d8 { 'aliquot_tag': 'ALQ_e8fed612', 'gdc_sample_type': 'Primary Tumor' } -C3N-03849.RNA-Seq.R1_L002.T C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 3824969966 FASTQ R1_L002 unaligned CPTAC3 9d031428-fca4-4514-a8ed-12e452afb4d3 5abe4f9e2f04887131e22aacc3e6db0a { 'aliquot_tag': 'ALQ_e8fed612', 'gdc_sample_type': 'Primary Tumor' } -C3N-03849.RNA-Seq.R1_L003.A C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 190411_UNC31-K00269_0208_BH3W3KBBXY_AAGTCCAA-TATGAGTA_S16_L003_R1_001.fastq.gz 4146821128 FASTQ R1_L003 unaligned CPTAC3 5deac991-e30d-46e4-a1e2-3c542e1724c1 ab71711d7822b19be0dd8b018bf6c0ae { 'aliquot_tag': 'ALQ_97c6b7c6', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03849.RNA-Seq.R2_L002.T C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 4423454652 FASTQ R2_L002 unaligned CPTAC3 2f645ebf-aff3-4e1e-a0cf-46cc3430bc65 09b5796dd65a19fa6b1e1a8fd6dc5ca7 { 'aliquot_tag': 'ALQ_e8fed612', 'gdc_sample_type': 'Primary Tumor' } -C3N-03849.RNA-Seq.R2_L003.A C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 190411_UNC31-K00269_0208_BH3W3KBBXY_AAGTCCAA-TATGAGTA_S16_L003_R2_001.fastq.gz 4496258668 FASTQ R2_L003 unaligned CPTAC3 dbe529ee-d8de-42b6-9706-0281444c1e06 055ec52e8ac283106ad583a1fa55b76a { 'aliquot_tag': 'ALQ_97c6b7c6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03849.RNA-Seq.genomic.A.hg38 C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 10f7642e-5e43-49c8-b9a2-b3b67e87a286.rna_seq.genomic.gdc_realn.bam 9031546935 BAM genomic harmonized CPTAC3 2a588b21-9c01-4f75-b05d-137750b44c79 9edb73100bbd75dcfc885d21175942a9 { 'aliquot_tag': 'ALQ_97c6b7c6', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03849.RNA-Seq.genomic.T.hg38 C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 dc96d36d-3343-47cb-8111-f75e97f21539.rna_seq.genomic.gdc_realn.bam 8379285734 BAM genomic harmonized CPTAC3 4d9c5be3-cd3e-47d3-9632-8a98ff7547df e34b677370843efad45fcd0e961957d8 { 'aliquot_tag': 'ALQ_e8fed612', 'gdc_sample_type': 'Primary Tumor' } +C3N-03849.RNA-Seq.R1_L002.T C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L002_R1_001.fastq.gz 3824969966 FASTQ R1_L002 unaligned CPTAC3 9d031428-fca4-4514-a8ed-12e452afb4d3 5abe4f9e2f04887131e22aacc3e6db0a { 'aliquot_tag': 'ALQ_e8fed612', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03849.RNA-Seq.R1_L003.A C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 190411_UNC31-K00269_0208_BH3W3KBBXY_AAGTCCAA-TATGAGTA_S16_L003_R1_001.fastq.gz 4146821128 FASTQ R1_L003 unaligned CPTAC3 5deac991-e30d-46e4-a1e2-3c542e1724c1 ab71711d7822b19be0dd8b018bf6c0ae { 'aliquot_tag': 'ALQ_97c6b7c6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03849.RNA-Seq.R2_L002.T C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 190328_UNC31-K00269_0204_BH5F5NBBXY_GGCTAC_S8_L002_R2_001.fastq.gz 4423454652 FASTQ R2_L002 unaligned CPTAC3 2f645ebf-aff3-4e1e-a0cf-46cc3430bc65 09b5796dd65a19fa6b1e1a8fd6dc5ca7 { 'aliquot_tag': 'ALQ_e8fed612', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03849.RNA-Seq.R2_L003.A C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 190411_UNC31-K00269_0208_BH3W3KBBXY_AAGTCCAA-TATGAGTA_S16_L003_R2_001.fastq.gz 4496258668 FASTQ R2_L003 unaligned CPTAC3 dbe529ee-d8de-42b6-9706-0281444c1e06 055ec52e8ac283106ad583a1fa55b76a { 'aliquot_tag': 'ALQ_97c6b7c6', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } C3N-03849.RNA-Seq.transcriptome.A.hg38 C3N-03849 HNSCC RNA-Seq tissue_normal CPT0237150006 10f7642e-5e43-49c8-b9a2-b3b67e87a286.rna_seq.transcriptome.gdc_realn.bam 11948208244 BAM transcriptome harmonized CPTAC3 8362d3fe-2435-4be0-b702-7b88c75bfea9 51acfde8e54a2ea75cf1c670c9b1549e { 'aliquot_tag': 'ALQ_97c6b7c6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03849.RNA-Seq.transcriptome.T.hg38 C3N-03849 HNSCC RNA-Seq tumor CPT0237130010 dc96d36d-3343-47cb-8111-f75e97f21539.rna_seq.transcriptome.gdc_realn.bam 10671266014 BAM transcriptome harmonized CPTAC3 adcace2f-32ad-4f6a-aab8-c4bb9f12649d 2dcec49c2603166caaaa00a142b40f95 { 'aliquot_tag': 'ALQ_e8fed612', 'gdc_sample_type': 'Primary Tumor' } C3N-03849.WGS.N C3N-03849 HNSCC WGS blood_normal CPT0237190002 CPT0237190002.WholeGenome.RP-1303.bam 66545871731 BAM aligned CPTAC3 f69cc680-c556-48e1-9cf9-290c437ee504 cf3a9c488a5af4bbf2d44ef3d9cccc56 { 'aliquot_tag': 'ALQ_555b9ede', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36474,12 +38834,12 @@ C3N-03851.miRNA-Seq.T C3N-03851 LSCC miRNA-Seq tumor CPT0237200010 190828_UNC32- C3N-03851.miRNA-Seq.T.hg38 C3N-03851 LSCC miRNA-Seq tumor CPT0237200010 71a324d9-03cf-44ec-b32f-3ea5c211370c_mirnaseq_gdc_realn.bam 312783754 BAM harmonized CPTAC3 2cb77047-c3f4-45f7-984a-4311a819ec57 fa4f3ffb392cbccefa5ae3051f014441 { 'aliquot_tag': 'ALQ_29cade6c', 'gdc_sample_type': 'Primary Tumor' } C3N-03851.RNA-Seq.chimeric.A.hg38 C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 24ff2c43-f475-4f6a-a505-1f1b1044193d.rna_seq.chimeric.gdc_realn.bam 296163808 BAM chimeric harmonized CPTAC3 87af9b8e-e26b-43e7-9079-a268d51758c3 90f1de4780efdd0c1aba7ac41d910239 { 'aliquot_tag': 'ALQ_e4d263a8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03851.RNA-Seq.chimeric.T.hg38 C3N-03851 LSCC RNA-Seq tumor CPT0237200010 bcf1e872-480a-4f7e-80d5-a20ac6b47a62.rna_seq.chimeric.gdc_realn.bam 127426417 BAM chimeric harmonized CPTAC3 5add4b32-8cb2-4f28-a713-a8babe82eef3 f3a40b715fb8faf61e9ad38453592816 { 'aliquot_tag': 'ALQ_29cade6c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03851.RNA-Seq.genomic.A.hg38 C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 24ff2c43-f475-4f6a-a505-1f1b1044193d.rna_seq.genomic.gdc_realn.bam 9077719472 BAM genomic harmonized CPTAC3 29765de5-f055-4a18-a44c-578d3d9b3429 24b923bf12dd011ad314e8e235d162c7 { 'aliquot_tag': 'ALQ_e4d263a8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03851.RNA-Seq.genomic.T.hg38 C3N-03851 LSCC RNA-Seq tumor CPT0237200010 bcf1e872-480a-4f7e-80d5-a20ac6b47a62.rna_seq.genomic.gdc_realn.bam 8105698646 BAM genomic harmonized CPTAC3 61b44e3e-9a7a-48d9-ac4c-62bb673b8e0a ff529b8819fccc7497cf48a8832b0a56 { 'aliquot_tag': 'ALQ_29cade6c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03851.RNA-Seq.R1_L001.T C3N-03851 LSCC RNA-Seq tumor CPT0237200010 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3646899211 FASTQ R1_L001 unaligned CPTAC3 093e9037-e025-4003-aef6-63b023192ac8 1ce8676996b6da9b43676688a5a68b3f { 'aliquot_tag': 'ALQ_29cade6c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03851.RNA-Seq.R1_L006.A C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 190208_UNC32-K00270_0146_BH3V2WBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 4216508872 FASTQ R1_L006 unaligned CPTAC3 be70d456-8e6f-446b-b4cd-0c017301a18a dcadbbc087c9981d3ad4837124bc667d { 'aliquot_tag': 'ALQ_e4d263a8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03851.RNA-Seq.R2_L001.T C3N-03851 LSCC RNA-Seq tumor CPT0237200010 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L001_R2_001.fastq.gz 4079259403 FASTQ R2_L001 unaligned CPTAC3 c2a93566-f7c3-40ae-acfc-8a164752cfe2 6ac5bc12cbf691e975d3c21d5c4e9c0b { 'aliquot_tag': 'ALQ_29cade6c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03851.RNA-Seq.R2_L006.A C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 190208_UNC32-K00270_0146_BH3V2WBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 4724113570 FASTQ R2_L006 unaligned CPTAC3 f46106ca-b640-4caa-ae6a-633020d2cb97 a746a4d23ca1e2906fbd85fcedf4f88f { 'aliquot_tag': 'ALQ_e4d263a8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03851.RNA-Seq.genomic.A.hg38 C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 24ff2c43-f475-4f6a-a505-1f1b1044193d.rna_seq.genomic.gdc_realn.bam 9077719472 BAM genomic harmonized CPTAC3 f7773471-3f8b-40df-8f56-b9a1c92320ad 24b923bf12dd011ad314e8e235d162c7 { 'aliquot_tag': 'ALQ_e4d263a8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03851.RNA-Seq.genomic.T.hg38 C3N-03851 LSCC RNA-Seq tumor CPT0237200010 bcf1e872-480a-4f7e-80d5-a20ac6b47a62.rna_seq.genomic.gdc_realn.bam 8105698646 BAM genomic harmonized CPTAC3 4d0ad8f7-c23d-4148-b11e-46fcdf5a8221 ff529b8819fccc7497cf48a8832b0a56 { 'aliquot_tag': 'ALQ_29cade6c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03851.RNA-Seq.R1_L001.T C3N-03851 LSCC RNA-Seq tumor CPT0237200010 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L001_R1_001.fastq.gz 3646899211 FASTQ R1_L001 unaligned CPTAC3 093e9037-e025-4003-aef6-63b023192ac8 1ce8676996b6da9b43676688a5a68b3f { 'aliquot_tag': 'ALQ_29cade6c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03851.RNA-Seq.R1_L006.A C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 190208_UNC32-K00270_0146_BH3V2WBBXY_GCCAAT_S22_L006_R1_001.fastq.gz 4216508872 FASTQ R1_L006 unaligned CPTAC3 be70d456-8e6f-446b-b4cd-0c017301a18a dcadbbc087c9981d3ad4837124bc667d { 'aliquot_tag': 'ALQ_e4d263a8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03851.RNA-Seq.R2_L001.T C3N-03851 LSCC RNA-Seq tumor CPT0237200010 190208_UNC32-K00270_0146_BH3V2WBBXY_GATCAG_S3_L001_R2_001.fastq.gz 4079259403 FASTQ R2_L001 unaligned CPTAC3 c2a93566-f7c3-40ae-acfc-8a164752cfe2 6ac5bc12cbf691e975d3c21d5c4e9c0b { 'aliquot_tag': 'ALQ_29cade6c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03851.RNA-Seq.R2_L006.A C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 190208_UNC32-K00270_0146_BH3V2WBBXY_GCCAAT_S22_L006_R2_001.fastq.gz 4724113570 FASTQ R2_L006 unaligned CPTAC3 f46106ca-b640-4caa-ae6a-633020d2cb97 a746a4d23ca1e2906fbd85fcedf4f88f { 'aliquot_tag': 'ALQ_e4d263a8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-03851.RNA-Seq.transcriptome.A.hg38 C3N-03851 LSCC RNA-Seq tissue_normal CPT0237210006 24ff2c43-f475-4f6a-a505-1f1b1044193d.rna_seq.transcriptome.gdc_realn.bam 10985805435 BAM transcriptome harmonized CPTAC3 e62befa0-cb04-4d7c-8e6a-d724ead1e935 291f8b9a8b30d3612c704651eb08fa8f { 'aliquot_tag': 'ALQ_e4d263a8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03851.RNA-Seq.transcriptome.T.hg38 C3N-03851 LSCC RNA-Seq tumor CPT0237200010 bcf1e872-480a-4f7e-80d5-a20ac6b47a62.rna_seq.transcriptome.gdc_realn.bam 9746416279 BAM transcriptome harmonized CPTAC3 5876bc9a-c278-4615-92f7-5177b0a8ed9f 4b34958eb9a0bec9ba0ce56ac26ed680 { 'aliquot_tag': 'ALQ_29cade6c', 'gdc_sample_type': 'Primary Tumor' } C3N-03851.WGS.N C3N-03851 LSCC WGS blood_normal CPT0237260002 CPT0237260002.WholeGenome.RP-1303.bam 61953955529 BAM aligned CPTAC3 f0dd829c-f73f-49b4-a623-e64d63653083 4bf5611b8b9aab1717329fbd4dbf6dcc { 'aliquot_tag': 'ALQ_519f7ba1', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36495,9 +38855,9 @@ C3N-03853.MethArray.Red.T C3N-03853 PDA Methylation Array tumor CPT0237270011 20 C3N-03853.miRNA-Seq.T C3N-03853 PDA miRNA-Seq tumor CPT0237270008 190712_UNC32-K00270_0192_BH7HL3BBXY_CAAAAG_S4_L004_R1_001.unaln.bam 175892230 BAM unaligned CPTAC3 5e030674-df69-46bf-bb40-0625bd852b7d 43bc750d3985f221a93e72863c8242e0 { 'aliquot_tag': 'ALQ_8c2abb0f', 'gdc_sample_type': 'Primary Tumor' } C3N-03853.miRNA-Seq.T.hg38 C3N-03853 PDA miRNA-Seq tumor CPT0237270008 b4aa1028-91f8-4791-a666-711da8f22bf7_mirnaseq_gdc_realn.bam 196908814 BAM harmonized CPTAC3 3e20566f-3938-45e7-8677-69b23abf5ca0 33a7a1cb8ff9a4238f7ee15469a95d34 { 'aliquot_tag': 'ALQ_8c2abb0f', 'gdc_sample_type': 'Primary Tumor' } C3N-03853.RNA-Seq.chimeric.T.hg38 C3N-03853 PDA RNA-Seq tumor CPT0237270008 98d2b2b4-80d2-4cb1-9b15-dfdbb96ba2d4.rna_seq.chimeric.gdc_realn.bam 25056443 BAM chimeric harmonized CPTAC3 afd6bd07-959c-490f-b1ee-836ff541667c e326cd40b6b556d0403e18303232f83a { 'aliquot_tag': 'ALQ_8c2abb0f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03853.RNA-Seq.genomic.T.hg38 C3N-03853 PDA RNA-Seq tumor CPT0237270008 98d2b2b4-80d2-4cb1-9b15-dfdbb96ba2d4.rna_seq.genomic.gdc_realn.bam 6329248607 BAM genomic harmonized CPTAC3 ad0ea188-0ad8-4bee-a357-c47b13e26483 a0079b1e27028eab65c04cab7d2c1697 { 'aliquot_tag': 'ALQ_8c2abb0f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03853.RNA-Seq.R1_L002.T C3N-03853 PDA RNA-Seq tumor CPT0237270008 190621_UNC32-K00270_0185_BH7G72BBXY_GACGTCTT-GGTTCACC_S5_L002_R1_001.fastq.gz 2916729014 FASTQ R1_L002 unaligned CPTAC3 54598abb-f151-46c9-bbcd-83996abfbff9 f4d648826df99e7e8f4e7aa531a1edce { 'aliquot_tag': 'ALQ_8c2abb0f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03853.RNA-Seq.R2_L002.T C3N-03853 PDA RNA-Seq tumor CPT0237270008 190621_UNC32-K00270_0185_BH7G72BBXY_GACGTCTT-GGTTCACC_S5_L002_R2_001.fastq.gz 3187026718 FASTQ R2_L002 unaligned CPTAC3 8fa2a977-6346-4929-b0ac-7dec7a2c6c85 404132c89161bfb036c9d190446c7118 { 'aliquot_tag': 'ALQ_8c2abb0f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03853.RNA-Seq.genomic.T.hg38 C3N-03853 PDA RNA-Seq tumor CPT0237270008 98d2b2b4-80d2-4cb1-9b15-dfdbb96ba2d4.rna_seq.genomic.gdc_realn.bam 6329248607 BAM genomic harmonized CPTAC3 f6bfea9a-236c-4c86-b4a9-fb81dd46ae47 a0079b1e27028eab65c04cab7d2c1697 { 'aliquot_tag': 'ALQ_8c2abb0f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03853.RNA-Seq.R1_L002.T C3N-03853 PDA RNA-Seq tumor CPT0237270008 190621_UNC32-K00270_0185_BH7G72BBXY_GACGTCTT-GGTTCACC_S5_L002_R1_001.fastq.gz 2916729014 FASTQ R1_L002 unaligned CPTAC3 54598abb-f151-46c9-bbcd-83996abfbff9 f4d648826df99e7e8f4e7aa531a1edce { 'aliquot_tag': 'ALQ_8c2abb0f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03853.RNA-Seq.R2_L002.T C3N-03853 PDA RNA-Seq tumor CPT0237270008 190621_UNC32-K00270_0185_BH7G72BBXY_GACGTCTT-GGTTCACC_S5_L002_R2_001.fastq.gz 3187026718 FASTQ R2_L002 unaligned CPTAC3 8fa2a977-6346-4929-b0ac-7dec7a2c6c85 404132c89161bfb036c9d190446c7118 { 'aliquot_tag': 'ALQ_8c2abb0f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-03853.RNA-Seq.transcriptome.T.hg38 C3N-03853 PDA RNA-Seq tumor CPT0237270008 98d2b2b4-80d2-4cb1-9b15-dfdbb96ba2d4.rna_seq.transcriptome.gdc_realn.bam 7684355976 BAM transcriptome harmonized CPTAC3 41f69ac7-ca2c-4e9b-ad7a-4f3ea62d6858 acde885d90d39bd02c23f3c304cdee57 { 'aliquot_tag': 'ALQ_8c2abb0f', 'gdc_sample_type': 'Primary Tumor' } C3N-03853.WGS.N C3N-03853 PDA WGS blood_normal CPT0237330002 CPT0237330002.WholeGenome.RP-1303.bam 68719328743 BAM aligned CPTAC3 23766041-2920-4634-ba6e-d757023e6a31 eb65d55161445c515e49b5b3bbfadbfc { 'aliquot_tag': 'ALQ_52232774', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03853.WGS.N.hg38 C3N-03853 PDA WGS blood_normal CPT0237330002 d9f1ee6b-0467-460b-b46d-ccd105ebb600_wgs_gdc_realn.bam 100567856315 BAM harmonized CPTAC3 f303165c-97a2-41a3-9c6c-b8f1478dab75 7a029d03aab90f8b3d9b5f776478f8d3 { 'aliquot_tag': 'ALQ_52232774', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36517,12 +38877,12 @@ C3N-03875.miRNA-Seq.T C3N-03875 LSCC miRNA-Seq tumor CPT0237410010 190206_UNC31- C3N-03875.miRNA-Seq.T.hg38 C3N-03875 LSCC miRNA-Seq tumor CPT0237410010 2f6cde2e-83c6-4a23-98cb-3c29d4ce27ee_mirnaseq_gdc_realn.bam 216958901 BAM harmonized CPTAC3 fed436ae-daff-4304-a460-5ef302d83c4e c190e0d67c4724a5bee7cf88d161c1e1 { 'aliquot_tag': 'ALQ_c2f314c1', 'gdc_sample_type': 'Primary Tumor' } C3N-03875.RNA-Seq.chimeric.A.hg38 C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 04d33a43-a092-495f-9ef1-84f4dc9da674.rna_seq.chimeric.gdc_realn.bam 417408545 BAM chimeric harmonized CPTAC3 6ca93cf0-6f28-4436-9913-e50d70ed93dc c16500c06b9144058715f8903f3101e5 { 'aliquot_tag': 'ALQ_484bd3d5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03875.RNA-Seq.chimeric.T.hg38 C3N-03875 LSCC RNA-Seq tumor CPT0237410010 46e5fcfa-f201-4a69-a389-b260be795d38.rna_seq.chimeric.gdc_realn.bam 239199837 BAM chimeric harmonized CPTAC3 a7e6a9b5-00b9-42a9-8c40-de6d82919b3b 5d31d2adeeab4302f11aeb13ac99d3e9 { 'aliquot_tag': 'ALQ_c2f314c1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03875.RNA-Seq.genomic.A.hg38 C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 04d33a43-a092-495f-9ef1-84f4dc9da674.rna_seq.genomic.gdc_realn.bam 9183303739 BAM genomic harmonized CPTAC3 89d40de3-2cd0-4374-9884-74c35ab42047 0df69260248ecfd6b8252781fbb2d994 { 'aliquot_tag': 'ALQ_484bd3d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03875.RNA-Seq.genomic.T.hg38 C3N-03875 LSCC RNA-Seq tumor CPT0237410010 46e5fcfa-f201-4a69-a389-b260be795d38.rna_seq.genomic.gdc_realn.bam 9416029934 BAM genomic harmonized CPTAC3 52f66b1d-b36a-4615-81f3-f8eebce21d38 a7cafe8a6fc668baf89e7488ff945c89 { 'aliquot_tag': 'ALQ_c2f314c1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03875.RNA-Seq.R1_L001.T C3N-03875 LSCC RNA-Seq tumor CPT0237410010 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 4410463611 FASTQ R1_L001 unaligned CPTAC3 85b882c0-75f5-48e0-9181-5bb320ef4a70 ef6ef1f182d8533bccde4517e245cc24 { 'aliquot_tag': 'ALQ_c2f314c1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03875.RNA-Seq.R1_L006.A C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 190208_UNC32-K00270_0146_BH3V2WBBXY_CAGATC_S21_L006_R1_001.fastq.gz 4159579810 FASTQ R1_L006 unaligned CPTAC3 8d00e1c4-c513-48f6-a19e-d87365f1f746 e7646f1d784ef3be98106f2fc6674957 { 'aliquot_tag': 'ALQ_484bd3d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03875.RNA-Seq.R2_L001.T C3N-03875 LSCC RNA-Seq tumor CPT0237410010 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4913417551 FASTQ R2_L001 unaligned CPTAC3 872b4b83-35e7-482c-8f05-c100b5a70785 d73eeef3a1ebe6bc358c4e29b31d5a6f { 'aliquot_tag': 'ALQ_c2f314c1', 'gdc_sample_type': 'Primary Tumor' } -C3N-03875.RNA-Seq.R2_L006.A C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 190208_UNC32-K00270_0146_BH3V2WBBXY_CAGATC_S21_L006_R2_001.fastq.gz 4677409539 FASTQ R2_L006 unaligned CPTAC3 2f211c5a-93f2-47e7-b29a-ba350245cabc 58e5c7877d1ab858ad983f02ddb2bb48 { 'aliquot_tag': 'ALQ_484bd3d5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03875.RNA-Seq.genomic.A.hg38 C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 04d33a43-a092-495f-9ef1-84f4dc9da674.rna_seq.genomic.gdc_realn.bam 9183303739 BAM genomic harmonized CPTAC3 0dbec24c-7ac2-4b1d-876d-1db550ddcd19 0df69260248ecfd6b8252781fbb2d994 { 'aliquot_tag': 'ALQ_484bd3d5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03875.RNA-Seq.genomic.T.hg38 C3N-03875 LSCC RNA-Seq tumor CPT0237410010 46e5fcfa-f201-4a69-a389-b260be795d38.rna_seq.genomic.gdc_realn.bam 9416029934 BAM genomic harmonized CPTAC3 05d88198-13f3-4124-8f16-b2cfbb10d216 a7cafe8a6fc668baf89e7488ff945c89 { 'aliquot_tag': 'ALQ_c2f314c1', 'gdc_sample_type': 'Primary Tumor' } +C3N-03875.RNA-Seq.R1_L001.T C3N-03875 LSCC RNA-Seq tumor CPT0237410010 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L001_R1_001.fastq.gz 4410463611 FASTQ R1_L001 unaligned CPTAC3 85b882c0-75f5-48e0-9181-5bb320ef4a70 ef6ef1f182d8533bccde4517e245cc24 { 'aliquot_tag': 'ALQ_c2f314c1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03875.RNA-Seq.R1_L006.A C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 190208_UNC32-K00270_0146_BH3V2WBBXY_CAGATC_S21_L006_R1_001.fastq.gz 4159579810 FASTQ R1_L006 unaligned CPTAC3 8d00e1c4-c513-48f6-a19e-d87365f1f746 e7646f1d784ef3be98106f2fc6674957 { 'aliquot_tag': 'ALQ_484bd3d5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03875.RNA-Seq.R2_L001.T C3N-03875 LSCC RNA-Seq tumor CPT0237410010 190208_UNC32-K00270_0146_BH3V2WBBXY_TAGCTT_S2_L001_R2_001.fastq.gz 4913417551 FASTQ R2_L001 unaligned CPTAC3 872b4b83-35e7-482c-8f05-c100b5a70785 d73eeef3a1ebe6bc358c4e29b31d5a6f { 'aliquot_tag': 'ALQ_c2f314c1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03875.RNA-Seq.R2_L006.A C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 190208_UNC32-K00270_0146_BH3V2WBBXY_CAGATC_S21_L006_R2_001.fastq.gz 4677409539 FASTQ R2_L006 unaligned CPTAC3 2f211c5a-93f2-47e7-b29a-ba350245cabc 58e5c7877d1ab858ad983f02ddb2bb48 { 'aliquot_tag': 'ALQ_484bd3d5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-03875.RNA-Seq.transcriptome.A.hg38 C3N-03875 LSCC RNA-Seq tissue_normal CPT0237430006 04d33a43-a092-495f-9ef1-84f4dc9da674.rna_seq.transcriptome.gdc_realn.bam 9152823260 BAM transcriptome harmonized CPTAC3 92b68f53-f87b-428a-9560-e42a2168cee1 c47616025b39151eab62809ef96802bd { 'aliquot_tag': 'ALQ_484bd3d5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03875.RNA-Seq.transcriptome.T.hg38 C3N-03875 LSCC RNA-Seq tumor CPT0237410010 46e5fcfa-f201-4a69-a389-b260be795d38.rna_seq.transcriptome.gdc_realn.bam 11736816056 BAM transcriptome harmonized CPTAC3 a62cab78-755e-48d4-8b59-288d71b4db3f 48a6f11eaadfeedce5cba9eb86a7b860 { 'aliquot_tag': 'ALQ_c2f314c1', 'gdc_sample_type': 'Primary Tumor' } C3N-03875.WGS.N C3N-03875 LSCC WGS blood_normal CPT0237470002 CPT0237470002.WholeGenome.RP-1303.bam 54198714257 BAM aligned CPTAC3 221b0d1a-3964-414d-9323-a8b2dfbbef96 a444d93357229b723195e00a86f2972b { 'aliquot_tag': 'ALQ_baa6b10c', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36543,12 +38903,12 @@ C3N-03876.miRNA-Seq.T C3N-03876 HNSCC miRNA-Seq tumor CPT0237480010 190228_UNC32 C3N-03876.miRNA-Seq.T.hg38 C3N-03876 HNSCC miRNA-Seq tumor CPT0237480010 7f20e14b-6029-41ac-9b35-9b63a2e37966_mirnaseq_gdc_realn.bam 253452516 BAM harmonized CPTAC3 37a9df3b-f421-455e-9ba8-66e2a769dc85 822f0900378ea5eb232ccc2c7f3e677a { 'aliquot_tag': 'ALQ_cfe376b0', 'gdc_sample_type': 'Primary Tumor' } C3N-03876.RNA-Seq.chimeric.A.hg38 C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 ca13bd6d-09fa-4bfc-a60e-e30486c9bf77.rna_seq.chimeric.gdc_realn.bam 37765291 BAM chimeric harmonized CPTAC3 d92eb879-77c7-49f2-91a0-27952ea60404 5b21dad28778d02250dd7e1745980f9c { 'aliquot_tag': 'ALQ_c4b77aa0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03876.RNA-Seq.chimeric.T.hg38 C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 0496eb1a-fcc5-4d38-af63-9156a800301b.rna_seq.chimeric.gdc_realn.bam 185234089 BAM chimeric harmonized CPTAC3 21b5f82f-8e32-4c13-92d5-176aea97c320 9c1aca35ad66931c86bf935398345f9a { 'aliquot_tag': 'ALQ_cfe376b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03876.RNA-Seq.genomic.A.hg38 C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 ca13bd6d-09fa-4bfc-a60e-e30486c9bf77.rna_seq.genomic.gdc_realn.bam 7645174843 BAM genomic harmonized CPTAC3 a3ed1830-96be-4030-b758-fbb6cf83ff42 54a3717bfb6df826a0f52942aba379ea { 'aliquot_tag': 'ALQ_c4b77aa0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03876.RNA-Seq.genomic.T.hg38 C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 0496eb1a-fcc5-4d38-af63-9156a800301b.rna_seq.genomic.gdc_realn.bam 8869779246 BAM genomic harmonized CPTAC3 ba7e5893-2bc6-401b-b660-72c594dd4cc1 04dba564b425a5825051b7b053632eb1 { 'aliquot_tag': 'ALQ_cfe376b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03876.RNA-Seq.R1_L003.T C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 3978691428 FASTQ R1_L003 unaligned CPTAC3 875f49db-1e95-411e-85c9-d270f883ac7f 60871aa233d15db994a4ef53479eac6d { 'aliquot_tag': 'ALQ_cfe376b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03876.RNA-Seq.R1_L004.A C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 190411_UNC31-K00269_0208_BH3W3KBBXY_ATCCACTG-AGGTGCGT_S17_L004_R1_001.fastq.gz 3483156993 FASTQ R1_L004 unaligned CPTAC3 45caa150-b63a-44f2-9a2e-008f0dc75a94 a347a0825a0b90fc8f2528bf6b64e4db { 'aliquot_tag': 'ALQ_c4b77aa0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03876.RNA-Seq.R2_L003.T C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4490877642 FASTQ R2_L003 unaligned CPTAC3 eb1de813-8c68-4a16-8c75-b25aa51eaa31 922e5c8c84480164d66637a58cc03ef3 { 'aliquot_tag': 'ALQ_cfe376b0', 'gdc_sample_type': 'Primary Tumor' } -C3N-03876.RNA-Seq.R2_L004.A C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 190411_UNC31-K00269_0208_BH3W3KBBXY_ATCCACTG-AGGTGCGT_S17_L004_R2_001.fastq.gz 3878085860 FASTQ R2_L004 unaligned CPTAC3 cb3176ad-f36b-42e6-80d4-73cd73605177 f481108781df26f69e237fa59bc8338c { 'aliquot_tag': 'ALQ_c4b77aa0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03876.RNA-Seq.genomic.A.hg38 C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 ca13bd6d-09fa-4bfc-a60e-e30486c9bf77.rna_seq.genomic.gdc_realn.bam 7645174843 BAM genomic harmonized CPTAC3 3d43b4d6-0076-45eb-ac8f-31d00d2df2b7 54a3717bfb6df826a0f52942aba379ea { 'aliquot_tag': 'ALQ_c4b77aa0', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03876.RNA-Seq.genomic.T.hg38 C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 0496eb1a-fcc5-4d38-af63-9156a800301b.rna_seq.genomic.gdc_realn.bam 8869779246 BAM genomic harmonized CPTAC3 3b7110bf-5aa5-449f-8a93-35e0bd6046de 04dba564b425a5825051b7b053632eb1 { 'aliquot_tag': 'ALQ_cfe376b0', 'gdc_sample_type': 'Primary Tumor' } +C3N-03876.RNA-Seq.R1_L003.T C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTTGA_S12_L003_R1_001.fastq.gz 3978691428 FASTQ R1_L003 unaligned CPTAC3 875f49db-1e95-411e-85c9-d270f883ac7f 60871aa233d15db994a4ef53479eac6d { 'aliquot_tag': 'ALQ_cfe376b0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03876.RNA-Seq.R1_L004.A C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 190411_UNC31-K00269_0208_BH3W3KBBXY_ATCCACTG-AGGTGCGT_S17_L004_R1_001.fastq.gz 3483156993 FASTQ R1_L004 unaligned CPTAC3 45caa150-b63a-44f2-9a2e-008f0dc75a94 a347a0825a0b90fc8f2528bf6b64e4db { 'aliquot_tag': 'ALQ_c4b77aa0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03876.RNA-Seq.R2_L003.T C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 190328_UNC31-K00269_0204_BH5F5NBBXY_ACTTGA_S12_L003_R2_001.fastq.gz 4490877642 FASTQ R2_L003 unaligned CPTAC3 eb1de813-8c68-4a16-8c75-b25aa51eaa31 922e5c8c84480164d66637a58cc03ef3 { 'aliquot_tag': 'ALQ_cfe376b0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-03876.RNA-Seq.R2_L004.A C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 190411_UNC31-K00269_0208_BH3W3KBBXY_ATCCACTG-AGGTGCGT_S17_L004_R2_001.fastq.gz 3878085860 FASTQ R2_L004 unaligned CPTAC3 cb3176ad-f36b-42e6-80d4-73cd73605177 f481108781df26f69e237fa59bc8338c { 'aliquot_tag': 'ALQ_c4b77aa0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } C3N-03876.RNA-Seq.transcriptome.A.hg38 C3N-03876 HNSCC RNA-Seq tissue_normal CPT0237500006 ca13bd6d-09fa-4bfc-a60e-e30486c9bf77.rna_seq.transcriptome.gdc_realn.bam 9971679794 BAM transcriptome harmonized CPTAC3 30391703-9941-4718-bc05-e47bd55b2183 821638a8796935caacba13fcd7cf4894 { 'aliquot_tag': 'ALQ_c4b77aa0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03876.RNA-Seq.transcriptome.T.hg38 C3N-03876 HNSCC RNA-Seq tumor CPT0237480010 0496eb1a-fcc5-4d38-af63-9156a800301b.rna_seq.transcriptome.gdc_realn.bam 11971328567 BAM transcriptome harmonized CPTAC3 adfbf81d-502f-4ebb-ac1b-10f5d45e8f5b bf52bb9deae17bc76f88881e4c4a4216 { 'aliquot_tag': 'ALQ_cfe376b0', 'gdc_sample_type': 'Primary Tumor' } C3N-03876.WGS.N C3N-03876 HNSCC WGS blood_normal CPT0237540002 CPT0237540002.WholeGenome.RP-1303.bam 62549034482 BAM aligned CPTAC3 fc20e056-a0e0-4e3a-9e58-1029bf5ea6cc c011700cc74d2b8bbe71d93b1a7093c7 { 'aliquot_tag': 'ALQ_365a1879', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36569,12 +38929,12 @@ C3N-03877.miRNA-Seq.T C3N-03877 LSCC miRNA-Seq tumor CPT0237550007 190206_UNC31- C3N-03877.miRNA-Seq.T.hg38 C3N-03877 LSCC miRNA-Seq tumor CPT0237550007 44d86c1c-172b-4194-b636-82c46523e015_mirnaseq_gdc_realn.bam 185926571 BAM harmonized CPTAC3 f84b7386-046d-45b2-ba2e-5f46dc16f9f8 3489be7f0be041bbd1d422ab54ff604b { 'aliquot_tag': 'ALQ_7b50c546', 'gdc_sample_type': 'Primary Tumor' } C3N-03877.RNA-Seq.chimeric.A.hg38 C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 d9c920d7-47c1-48ca-bc66-8115ea58acfd.rna_seq.chimeric.gdc_realn.bam 224294823 BAM chimeric harmonized CPTAC3 87b077c2-d6f2-41e0-98ec-02baacf56971 0ca1fa6da39b5efdaea7f36ed2e0fc36 { 'aliquot_tag': 'ALQ_e628bb21', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03877.RNA-Seq.chimeric.T.hg38 C3N-03877 LSCC RNA-Seq tumor CPT0237550007 12257b3a-20f1-4ab4-a811-77ab63870e1e.rna_seq.chimeric.gdc_realn.bam 187002611 BAM chimeric harmonized CPTAC3 647360bb-1d3f-4d0d-b5ed-c32de5f63045 8af538c7e0c9042e346f45b975d6f21d { 'aliquot_tag': 'ALQ_7b50c546', 'gdc_sample_type': 'Primary Tumor' } -C3N-03877.RNA-Seq.genomic.A.hg38 C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 d9c920d7-47c1-48ca-bc66-8115ea58acfd.rna_seq.genomic.gdc_realn.bam 9107443734 BAM genomic harmonized CPTAC3 8b6ff470-8632-4cf2-b677-b02d4ccdc0b1 78e5045540b8cbf2222b6b45468aadbe { 'aliquot_tag': 'ALQ_e628bb21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03877.RNA-Seq.genomic.T.hg38 C3N-03877 LSCC RNA-Seq tumor CPT0237550007 12257b3a-20f1-4ab4-a811-77ab63870e1e.rna_seq.genomic.gdc_realn.bam 7628291978 BAM genomic harmonized CPTAC3 8018ba48-faea-413b-b6ff-519e04d566d5 69024d7bcbb1ef007092ad7c3da98c13 { 'aliquot_tag': 'ALQ_7b50c546', 'gdc_sample_type': 'Primary Tumor' } -C3N-03877.RNA-Seq.R1_L003.T C3N-03877 LSCC RNA-Seq tumor CPT0237550007 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L003_R1_001.fastq.gz 3478384505 FASTQ R1_L003 unaligned CPTAC3 093f7f54-5358-45f0-820c-97a593a0c06e 59842dab18a5465fe87c3ce750d97afb { 'aliquot_tag': 'ALQ_7b50c546', 'gdc_sample_type': 'Primary Tumor' } -C3N-03877.RNA-Seq.R1_L006.A C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 4122614708 FASTQ R1_L006 unaligned CPTAC3 977ecbfb-a56f-4580-abf5-674a53a184b4 3352a8ce27f1541ab02b1ca75d9e0e0d { 'aliquot_tag': 'ALQ_e628bb21', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03877.RNA-Seq.R2_L003.T C3N-03877 LSCC RNA-Seq tumor CPT0237550007 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L003_R2_001.fastq.gz 3807066291 FASTQ R2_L003 unaligned CPTAC3 f25e0ad3-ac3f-44d1-8276-5cd0a0ee5770 54c0a7f9a8b85fc897d88f6bc0ef1e93 { 'aliquot_tag': 'ALQ_7b50c546', 'gdc_sample_type': 'Primary Tumor' } -C3N-03877.RNA-Seq.R2_L006.A C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 4580895911 FASTQ R2_L006 unaligned CPTAC3 39478aaa-3dc2-4a0f-b836-c263c85995df 309553994d8c231833147011a2218ed3 { 'aliquot_tag': 'ALQ_e628bb21', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03877.RNA-Seq.genomic.A.hg38 C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 d9c920d7-47c1-48ca-bc66-8115ea58acfd.rna_seq.genomic.gdc_realn.bam 9107443734 BAM genomic harmonized CPTAC3 21809ec3-4ae7-467a-ba6a-4b940fa04669 78e5045540b8cbf2222b6b45468aadbe { 'aliquot_tag': 'ALQ_e628bb21', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03877.RNA-Seq.genomic.T.hg38 C3N-03877 LSCC RNA-Seq tumor CPT0237550007 12257b3a-20f1-4ab4-a811-77ab63870e1e.rna_seq.genomic.gdc_realn.bam 7628291978 BAM genomic harmonized CPTAC3 be040f8a-f805-4443-ae4e-883a54c5be64 69024d7bcbb1ef007092ad7c3da98c13 { 'aliquot_tag': 'ALQ_7b50c546', 'gdc_sample_type': 'Primary Tumor' } +C3N-03877.RNA-Seq.R1_L003.T C3N-03877 LSCC RNA-Seq tumor CPT0237550007 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L003_R1_001.fastq.gz 3478384505 FASTQ R1_L003 unaligned CPTAC3 093f7f54-5358-45f0-820c-97a593a0c06e 59842dab18a5465fe87c3ce750d97afb { 'aliquot_tag': 'ALQ_7b50c546', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-03877.RNA-Seq.R1_L006.A C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTTGA_S24_L006_R1_001.fastq.gz 4122614708 FASTQ R1_L006 unaligned CPTAC3 977ecbfb-a56f-4580-abf5-674a53a184b4 3352a8ce27f1541ab02b1ca75d9e0e0d { 'aliquot_tag': 'ALQ_e628bb21', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03877.RNA-Seq.R2_L003.T C3N-03877 LSCC RNA-Seq tumor CPT0237550007 190219_UNC31-K00269_0194_AH3V53BBXY_GAGTGG_S11_L003_R2_001.fastq.gz 3807066291 FASTQ R2_L003 unaligned CPTAC3 f25e0ad3-ac3f-44d1-8276-5cd0a0ee5770 54c0a7f9a8b85fc897d88f6bc0ef1e93 { 'aliquot_tag': 'ALQ_7b50c546', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-03877.RNA-Seq.R2_L006.A C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 190208_UNC32-K00270_0146_BH3V2WBBXY_ACTTGA_S24_L006_R2_001.fastq.gz 4580895911 FASTQ R2_L006 unaligned CPTAC3 39478aaa-3dc2-4a0f-b836-c263c85995df 309553994d8c231833147011a2218ed3 { 'aliquot_tag': 'ALQ_e628bb21', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } C3N-03877.RNA-Seq.transcriptome.A.hg38 C3N-03877 LSCC RNA-Seq tissue_normal CPT0237570009 d9c920d7-47c1-48ca-bc66-8115ea58acfd.rna_seq.transcriptome.gdc_realn.bam 10449994110 BAM transcriptome harmonized CPTAC3 9ed07303-a0e7-4fa0-8876-3e428a121a91 042108aa96dcc29800fa7973cda5916e { 'aliquot_tag': 'ALQ_e628bb21', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03877.RNA-Seq.transcriptome.T.hg38 C3N-03877 LSCC RNA-Seq tumor CPT0237550007 12257b3a-20f1-4ab4-a811-77ab63870e1e.rna_seq.transcriptome.gdc_realn.bam 8270131608 BAM transcriptome harmonized CPTAC3 a052a090-9ab2-4ea8-88ff-73e5bcae435b 5a90c1254a181d27a9c55ab394601065 { 'aliquot_tag': 'ALQ_7b50c546', 'gdc_sample_type': 'Primary Tumor' } C3N-03877.WGS.N C3N-03877 LSCC WGS blood_normal CPT0237610002 CPT0237610002.WholeGenome.RP-1303.bam 55048526954 BAM aligned CPTAC3 375ccf0d-8064-429e-8a6d-e000f9df40e6 ab1fe89ade56757fe2813505b4625430 { 'aliquot_tag': 'ALQ_782ee5a7', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36598,11 +38958,11 @@ C3N-03878.miRNA-Seq.T.hg38 C3N-03878 HNSCC miRNA-Seq tumor CPT0237620007 77a1cbe C3N-03878.RNA-Seq.chimeric.A.hg38 C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 d8e37316-4377-4d9c-bcce-ef831d2e2f33.rna_seq.chimeric.gdc_realn.bam 77070435 BAM chimeric harmonized CPTAC3 bc8a3791-f95c-415a-a061-2e4028d5feef 672bc4fef5cb1ac7a8a5165e1ff73b0a { 'aliquot_tag': 'ALQ_271cb35f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03878.RNA-Seq.chimeric.T.hg38 C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 5019b83b-2247-42f7-a0fc-abbf13c93bf7.rna_seq.chimeric.gdc_realn.bam 34128239 BAM chimeric harmonized CPTAC3 810fb1fb-ac3e-450f-a3db-c106be7ab81b 0942be39b763d9611e0269b902c61bc7 { 'aliquot_tag': 'ALQ_4fe46bf8', 'gdc_sample_type': 'Primary Tumor' } C3N-03878.RNA-Seq.genomic.A.hg38 C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 d8e37316-4377-4d9c-bcce-ef831d2e2f33.rna_seq.genomic.gdc_realn.bam 9595053815 BAM genomic harmonized CPTAC3 d8cc17c2-8cc0-4388-bdb3-589e355f4101 bb171f007a693e76f4de533bd89f8f42 { 'aliquot_tag': 'ALQ_271cb35f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03878.RNA-Seq.genomic.T.hg38 C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 5019b83b-2247-42f7-a0fc-abbf13c93bf7.rna_seq.genomic.gdc_realn.bam 8212561737 BAM genomic harmonized CPTAC3 7a4b601b-6c92-4826-8439-5fc26097efbb 1815bace9d05cb2dcd13563b2c922755 { 'aliquot_tag': 'ALQ_4fe46bf8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03878.RNA-Seq.R1_L004.A C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCTTGTCA-GAACATAC_S18_L004_R1_001.fastq.gz 4526848324 FASTQ R1_L004 unaligned CPTAC3 b394fa19-bdfc-4dd9-a1a7-2b877e8d1a5f 502f4851e787feaf96e26ac311003267 { 'aliquot_tag': 'ALQ_271cb35f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03878.RNA-Seq.R1_L006.T C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 190411_UNC31-K00269_0208_BH3W3KBBXY_GGCTTAAG-TCGTGACC_S25_L006_R1_001.fastq.gz 3836135291 FASTQ R1_L006 unaligned CPTAC3 f567f329-24f9-4d8d-a487-2ff897ce1832 a7863102a61f0245bf0ca23aa45a9c5d { 'aliquot_tag': 'ALQ_4fe46bf8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03878.RNA-Seq.R2_L004.A C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCTTGTCA-GAACATAC_S18_L004_R2_001.fastq.gz 5042659351 FASTQ R2_L004 unaligned CPTAC3 4994e721-129a-4b4a-a27b-74a77ca935d2 ce30720727d157b0490a2340b6e08ba7 { 'aliquot_tag': 'ALQ_271cb35f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03878.RNA-Seq.R2_L006.T C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 190411_UNC31-K00269_0208_BH3W3KBBXY_GGCTTAAG-TCGTGACC_S25_L006_R2_001.fastq.gz 3966219637 FASTQ R2_L006 unaligned CPTAC3 120b2b07-94b3-453c-be52-a28ea49bcafc 80c7fd154d85a34503e64e5527ce77aa { 'aliquot_tag': 'ALQ_4fe46bf8', 'gdc_sample_type': 'Primary Tumor' } +C3N-03878.RNA-Seq.genomic.T.hg38 C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 5019b83b-2247-42f7-a0fc-abbf13c93bf7.rna_seq.genomic.gdc_realn.bam 8212561737 BAM genomic harmonized CPTAC3 3b989ae7-bb31-48fc-97cc-b36edd9c59d3 1815bace9d05cb2dcd13563b2c922755 { 'aliquot_tag': 'ALQ_4fe46bf8', 'gdc_sample_type': 'Primary Tumor' } +C3N-03878.RNA-Seq.R1_L004.A C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCTTGTCA-GAACATAC_S18_L004_R1_001.fastq.gz 4526848324 FASTQ R1_L004 unaligned CPTAC3 b394fa19-bdfc-4dd9-a1a7-2b877e8d1a5f 502f4851e787feaf96e26ac311003267 { 'aliquot_tag': 'ALQ_271cb35f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-03878.RNA-Seq.R1_L006.T C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 190411_UNC31-K00269_0208_BH3W3KBBXY_GGCTTAAG-TCGTGACC_S25_L006_R1_001.fastq.gz 3836135291 FASTQ R1_L006 unaligned CPTAC3 f567f329-24f9-4d8d-a487-2ff897ce1832 a7863102a61f0245bf0ca23aa45a9c5d { 'aliquot_tag': 'ALQ_4fe46bf8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-03878.RNA-Seq.R2_L004.A C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCTTGTCA-GAACATAC_S18_L004_R2_001.fastq.gz 5042659351 FASTQ R2_L004 unaligned CPTAC3 4994e721-129a-4b4a-a27b-74a77ca935d2 ce30720727d157b0490a2340b6e08ba7 { 'aliquot_tag': 'ALQ_271cb35f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-03878.RNA-Seq.R2_L006.T C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 190411_UNC31-K00269_0208_BH3W3KBBXY_GGCTTAAG-TCGTGACC_S25_L006_R2_001.fastq.gz 3966219637 FASTQ R2_L006 unaligned CPTAC3 120b2b07-94b3-453c-be52-a28ea49bcafc 80c7fd154d85a34503e64e5527ce77aa { 'aliquot_tag': 'ALQ_4fe46bf8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-03878.RNA-Seq.transcriptome.A.hg38 C3N-03878 HNSCC RNA-Seq tissue_normal CPT0237640009 d8e37316-4377-4d9c-bcce-ef831d2e2f33.rna_seq.transcriptome.gdc_realn.bam 12932520499 BAM transcriptome harmonized CPTAC3 90de5d0e-e75b-4754-8274-b28c810a586a 102c3ad6c6fa19b6d468ade9f2bd0e27 { 'aliquot_tag': 'ALQ_271cb35f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03878.RNA-Seq.transcriptome.T.hg38 C3N-03878 HNSCC RNA-Seq tumor CPT0237620007 5019b83b-2247-42f7-a0fc-abbf13c93bf7.rna_seq.transcriptome.gdc_realn.bam 9903156816 BAM transcriptome harmonized CPTAC3 84d10225-1516-4d2a-83e5-a3da37cdb5b6 644dfdf836bcbb3e74a23393de011eb9 { 'aliquot_tag': 'ALQ_4fe46bf8', 'gdc_sample_type': 'Primary Tumor' } C3N-03878.WGS.N C3N-03878 HNSCC WGS blood_normal CPT0237680002 CPT0237680002.WholeGenome.RP-1303.bam 83684450921 BAM aligned CPTAC3 1853b5bd-cc1e-466a-8cbb-ad11f2b8008e fb3b466a87a97a8c2a97e7378c37bdd1 { 'aliquot_tag': 'ALQ_753e87d6', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36625,12 +38985,12 @@ C3N-03880.miRNA-Seq.T C3N-03880 LSCC miRNA-Seq tumor CPT0237690010 190206_UNC31- C3N-03880.miRNA-Seq.T.hg38 C3N-03880 LSCC miRNA-Seq tumor CPT0237690010 1b27161f-526e-4f0e-a65d-a010a1c3ffeb_mirnaseq_gdc_realn.bam 166456396 BAM harmonized CPTAC3 f0572e50-8b4a-49fa-8770-610b75b50e88 41f20d2d52405de3a3786dd578369f48 { 'aliquot_tag': 'ALQ_bf4bfe0b', 'gdc_sample_type': 'Primary Tumor' } C3N-03880.RNA-Seq.chimeric.A.hg38 C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 d67685f2-4ac5-4f98-a1ce-5dce88cd68b9.rna_seq.chimeric.gdc_realn.bam 167908367 BAM chimeric harmonized CPTAC3 3735407d-c9e9-4496-9a39-bbc86e2683b3 94954f411862bfba9f145e97952febe1 { 'aliquot_tag': 'ALQ_24a0ef8a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03880.RNA-Seq.chimeric.T.hg38 C3N-03880 LSCC RNA-Seq tumor CPT0237690010 4d8ad610-39d0-4a67-a00f-27ce2f995aea.rna_seq.chimeric.gdc_realn.bam 222330521 BAM chimeric harmonized CPTAC3 0087e612-9de7-489b-9b54-225b2c78ba7d 02ada2fb7e5724a15b9b3374040d8c23 { 'aliquot_tag': 'ALQ_bf4bfe0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03880.RNA-Seq.genomic.A.hg38 C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 d67685f2-4ac5-4f98-a1ce-5dce88cd68b9.rna_seq.genomic.gdc_realn.bam 8713045991 BAM genomic harmonized CPTAC3 2abe0ed8-84d2-4d90-922e-030d7a97d7f3 c90a499b63289d526ee1b8d6464aea78 { 'aliquot_tag': 'ALQ_24a0ef8a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03880.RNA-Seq.genomic.A.hg38 C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 d67685f2-4ac5-4f98-a1ce-5dce88cd68b9.rna_seq.genomic.gdc_realn.bam 8713045991 BAM genomic harmonized CPTAC3 0210d27f-d87c-41f4-a6c5-83afe2948cb0 c90a499b63289d526ee1b8d6464aea78 { 'aliquot_tag': 'ALQ_24a0ef8a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03880.RNA-Seq.genomic.T.hg38 C3N-03880 LSCC RNA-Seq tumor CPT0237690010 4d8ad610-39d0-4a67-a00f-27ce2f995aea.rna_seq.genomic.gdc_realn.bam 9161723257 BAM genomic harmonized CPTAC3 94ad7b87-6da0-43b9-912e-2a72322c853f ea3d7171d96675ac82787661b391702b { 'aliquot_tag': 'ALQ_bf4bfe0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03880.RNA-Seq.R1_L002.T C3N-03880 LSCC RNA-Seq tumor CPT0237690010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L002_R1_001.fastq.gz 4346690127 FASTQ R1_L002 unaligned CPTAC3 0d0eeb9c-9b8e-4a0b-be7f-131b97fa53b4 7102eae9849af5d6a88fe830750130e7 { 'aliquot_tag': 'ALQ_bf4bfe0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03880.RNA-Seq.R1_L008.A C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L008_R1_001.fastq.gz 4077191215 FASTQ R1_L008 unaligned CPTAC3 971a92e1-7067-4c8f-ae62-b854cd51c737 23137f973ee0b62f4151c423c972ea24 { 'aliquot_tag': 'ALQ_24a0ef8a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03880.RNA-Seq.R2_L002.T C3N-03880 LSCC RNA-Seq tumor CPT0237690010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L002_R2_001.fastq.gz 4514924090 FASTQ R2_L002 unaligned CPTAC3 7ec5ed01-9084-4884-b9ba-7aeaa93957d2 2dbf186759601ace2a61a4eadd57a5de { 'aliquot_tag': 'ALQ_bf4bfe0b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03880.RNA-Seq.R2_L008.A C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L008_R2_001.fastq.gz 4589515737 FASTQ R2_L008 unaligned CPTAC3 94a02b67-3175-49c3-ab57-511580a3e972 158239d3c6bd3b7960ad0962509373cf { 'aliquot_tag': 'ALQ_24a0ef8a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03880.RNA-Seq.R1_L002.T C3N-03880 LSCC RNA-Seq tumor CPT0237690010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L002_R1_001.fastq.gz 4346690127 FASTQ R1_L002 unaligned CPTAC3 0d0eeb9c-9b8e-4a0b-be7f-131b97fa53b4 7102eae9849af5d6a88fe830750130e7 { 'aliquot_tag': 'ALQ_bf4bfe0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03880.RNA-Seq.R1_L008.A C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L008_R1_001.fastq.gz 4077191215 FASTQ R1_L008 unaligned CPTAC3 971a92e1-7067-4c8f-ae62-b854cd51c737 23137f973ee0b62f4151c423c972ea24 { 'aliquot_tag': 'ALQ_24a0ef8a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-03880.RNA-Seq.R2_L002.T C3N-03880 LSCC RNA-Seq tumor CPT0237690010 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L002_R2_001.fastq.gz 4514924090 FASTQ R2_L002 unaligned CPTAC3 7ec5ed01-9084-4884-b9ba-7aeaa93957d2 2dbf186759601ace2a61a4eadd57a5de { 'aliquot_tag': 'ALQ_bf4bfe0b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-03880.RNA-Seq.R2_L008.A C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 190208_UNC32-K00270_0146_BH3V2WBBXY_AGTTCC_S8_L008_R2_001.fastq.gz 4589515737 FASTQ R2_L008 unaligned CPTAC3 94a02b67-3175-49c3-ab57-511580a3e972 158239d3c6bd3b7960ad0962509373cf { 'aliquot_tag': 'ALQ_24a0ef8a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-03880.RNA-Seq.transcriptome.A.hg38 C3N-03880 LSCC RNA-Seq tissue_normal CPT0237710009 d67685f2-4ac5-4f98-a1ce-5dce88cd68b9.rna_seq.transcriptome.gdc_realn.bam 10526166682 BAM transcriptome harmonized CPTAC3 b3b0ce53-fb38-41a1-b043-b7a62a8a1eda 885cb19b40beed1f9a816094f193125e { 'aliquot_tag': 'ALQ_24a0ef8a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03880.RNA-Seq.transcriptome.T.hg38 C3N-03880 LSCC RNA-Seq tumor CPT0237690010 4d8ad610-39d0-4a67-a00f-27ce2f995aea.rna_seq.transcriptome.gdc_realn.bam 9975333425 BAM transcriptome harmonized CPTAC3 a5dd8c98-42aa-4270-ab4a-a15fb2ed5284 8eadb6a2ef465864235410534c63630f { 'aliquot_tag': 'ALQ_bf4bfe0b', 'gdc_sample_type': 'Primary Tumor' } C3N-03880.WGS.N C3N-03880 LSCC WGS blood_normal CPT0237750002 CPT0237750002.WholeGenome.RP-1303.bam 55023818043 BAM aligned CPTAC3 6ea399f6-c6fe-411a-abc4-475195474297 13742542ddb1980ad7817b02f7772417 { 'aliquot_tag': 'ALQ_46f290c2', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36653,12 +39013,12 @@ C3N-03882.miRNA-Seq.T C3N-03882 LSCC miRNA-Seq tumor CPT0237760009 190206_UNC31- C3N-03882.miRNA-Seq.T.hg38 C3N-03882 LSCC miRNA-Seq tumor CPT0237760009 6e76c17d-c46d-4fbc-9c6c-f76251148c77_mirnaseq_gdc_realn.bam 200481127 BAM harmonized CPTAC3 d392c493-6975-45ce-8e19-12b078401d91 86942fa93e9694a4156e6a6393b81e4b { 'aliquot_tag': 'ALQ_9680339a', 'gdc_sample_type': 'Primary Tumor' } C3N-03882.RNA-Seq.chimeric.A.hg38 C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 07dcc7bc-f8ab-40f7-b141-5a9723ddff47.rna_seq.chimeric.gdc_realn.bam 256240369 BAM chimeric harmonized CPTAC3 9ec3d138-6165-47ed-a20d-be415cd6e749 697db6c1ce4d6f8d9ceb43ec00144b51 { 'aliquot_tag': 'ALQ_29b08dfb', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03882.RNA-Seq.chimeric.T.hg38 C3N-03882 LSCC RNA-Seq tumor CPT0237760009 89f2f554-2f35-480d-9f6e-2b28bb3f81cf.rna_seq.chimeric.gdc_realn.bam 196211898 BAM chimeric harmonized CPTAC3 7a98ff20-b386-4ea9-9945-db05b57f049a 0feb1b60d44963b290d02d2946563117 { 'aliquot_tag': 'ALQ_9680339a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03882.RNA-Seq.genomic.A.hg38 C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 07dcc7bc-f8ab-40f7-b141-5a9723ddff47.rna_seq.genomic.gdc_realn.bam 5933635986 BAM genomic harmonized CPTAC3 cc7ecd6a-6951-4a5c-8324-53b98a4a4830 83e1fddd5f44e8813e00b9eaa71d0a93 { 'aliquot_tag': 'ALQ_29b08dfb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03882.RNA-Seq.genomic.T.hg38 C3N-03882 LSCC RNA-Seq tumor CPT0237760009 89f2f554-2f35-480d-9f6e-2b28bb3f81cf.rna_seq.genomic.gdc_realn.bam 8357248813 BAM genomic harmonized CPTAC3 f2f9d823-9911-443a-b9aa-28815660db09 3b1fd112c62a175f6b750f68fe78c096 { 'aliquot_tag': 'ALQ_9680339a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03882.RNA-Seq.R1_L002.A C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L002_R1_001.fastq.gz 2776063190 FASTQ R1_L002 unaligned CPTAC3 b0d640ca-cb22-4a66-ba1f-69b8fe7ad785 70c480bda998fbaef61626184fea524c { 'aliquot_tag': 'ALQ_29b08dfb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03882.RNA-Seq.R1_L002.T C3N-03882 LSCC RNA-Seq tumor CPT0237760009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L002_R1_001.fastq.gz 4025580142 FASTQ R1_L002 unaligned CPTAC3 c9262a6c-7dcf-424d-83aa-67ca0302dabd 5f5b5b5696ed8873cf47bab4af8d0aa8 { 'aliquot_tag': 'ALQ_9680339a', 'gdc_sample_type': 'Primary Tumor' } -C3N-03882.RNA-Seq.R2_L002.A C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L002_R2_001.fastq.gz 3022014343 FASTQ R2_L002 unaligned CPTAC3 11677d95-4d86-4bcb-88e8-1f3ad3ee47db ef6529892cce781fed286859439ab2e9 { 'aliquot_tag': 'ALQ_29b08dfb', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03882.RNA-Seq.R2_L002.T C3N-03882 LSCC RNA-Seq tumor CPT0237760009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L002_R2_001.fastq.gz 4428893679 FASTQ R2_L002 unaligned CPTAC3 4aef951a-5c9b-4958-8087-7c984ed73fc0 8da7b85be21e8adc1f4eb5c2e28f83b7 { 'aliquot_tag': 'ALQ_9680339a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03882.RNA-Seq.genomic.A.hg38 C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 07dcc7bc-f8ab-40f7-b141-5a9723ddff47.rna_seq.genomic.gdc_realn.bam 5933635986 BAM genomic harmonized CPTAC3 43f0afd7-d8ae-4eed-bde9-e89ae1f04647 83e1fddd5f44e8813e00b9eaa71d0a93 { 'aliquot_tag': 'ALQ_29b08dfb', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03882.RNA-Seq.genomic.T.hg38 C3N-03882 LSCC RNA-Seq tumor CPT0237760009 89f2f554-2f35-480d-9f6e-2b28bb3f81cf.rna_seq.genomic.gdc_realn.bam 8357248813 BAM genomic harmonized CPTAC3 766e578a-85be-4ba5-a4c4-2299a600bd16 3b1fd112c62a175f6b750f68fe78c096 { 'aliquot_tag': 'ALQ_9680339a', 'gdc_sample_type': 'Primary Tumor' } +C3N-03882.RNA-Seq.R1_L002.A C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L002_R1_001.fastq.gz 2776063190 FASTQ R1_L002 unaligned CPTAC3 b0d640ca-cb22-4a66-ba1f-69b8fe7ad785 70c480bda998fbaef61626184fea524c { 'aliquot_tag': 'ALQ_29b08dfb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-03882.RNA-Seq.R1_L002.T C3N-03882 LSCC RNA-Seq tumor CPT0237760009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L002_R1_001.fastq.gz 4025580142 FASTQ R1_L002 unaligned CPTAC3 c9262a6c-7dcf-424d-83aa-67ca0302dabd 5f5b5b5696ed8873cf47bab4af8d0aa8 { 'aliquot_tag': 'ALQ_9680339a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-03882.RNA-Seq.R2_L002.A C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 190219_UNC31-K00269_0194_AH3V53BBXY_ATGTCA_S5_L002_R2_001.fastq.gz 3022014343 FASTQ R2_L002 unaligned CPTAC3 11677d95-4d86-4bcb-88e8-1f3ad3ee47db ef6529892cce781fed286859439ab2e9 { 'aliquot_tag': 'ALQ_29b08dfb', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-03882.RNA-Seq.R2_L002.T C3N-03882 LSCC RNA-Seq tumor CPT0237760009 190208_UNC32-K00270_0146_BH3V2WBBXY_CTTGTA_S5_L002_R2_001.fastq.gz 4428893679 FASTQ R2_L002 unaligned CPTAC3 4aef951a-5c9b-4958-8087-7c984ed73fc0 8da7b85be21e8adc1f4eb5c2e28f83b7 { 'aliquot_tag': 'ALQ_9680339a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-03882.RNA-Seq.transcriptome.A.hg38 C3N-03882 LSCC RNA-Seq tissue_normal CPT0237780009 07dcc7bc-f8ab-40f7-b141-5a9723ddff47.rna_seq.transcriptome.gdc_realn.bam 6301660694 BAM transcriptome harmonized CPTAC3 5b25cc74-293d-460d-a09b-f26abded9a5e 916e5d665670de63307af39300a1ad21 { 'aliquot_tag': 'ALQ_29b08dfb', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03882.RNA-Seq.transcriptome.T.hg38 C3N-03882 LSCC RNA-Seq tumor CPT0237760009 89f2f554-2f35-480d-9f6e-2b28bb3f81cf.rna_seq.transcriptome.gdc_realn.bam 10545806269 BAM transcriptome harmonized CPTAC3 7c9fbb50-1229-40b7-a8dd-65b8011284d1 3cb13cf86bd0562e2bc9c0676169b968 { 'aliquot_tag': 'ALQ_9680339a', 'gdc_sample_type': 'Primary Tumor' } C3N-03882.WGS.N C3N-03882 LSCC WGS blood_normal CPT0237820002 CPT0237820002.WholeGenome.RP-1303.bam 60661657819 BAM aligned CPTAC3 4961ce53-fea1-4a27-84a9-dfdb2070ead0 db477b8427b96f16cbe140410aad4cb6 { 'aliquot_tag': 'ALQ_584fe07', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36679,8 +39039,8 @@ C3N-03884.miRNA-Seq.T C3N-03884 PDA miRNA-Seq tumor CPT0237840010 190828_UNC32-K C3N-03884.miRNA-Seq.T.hg38 C3N-03884 PDA miRNA-Seq tumor CPT0237840010 d16eea16-2b24-4890-a3c8-968292edaa85_mirnaseq_gdc_realn.bam 437245397 BAM harmonized CPTAC3 957f6599-ebef-40ed-80e5-30e0fed4c3b6 b3991b534230bc6e23788a184baff489 { 'aliquot_tag': 'ALQ_7dd15bca', 'gdc_sample_type': 'Primary Tumor' } C3N-03884.RNA-Seq.chimeric.T.hg38 C3N-03884 PDA RNA-Seq tumor CPT0237840010 48c47bf1-90db-4783-ad31-42eb9ef1c10f.rna_seq.chimeric.gdc_realn.bam 120544865 BAM chimeric harmonized CPTAC3 bb0a6ece-dd31-4453-adcd-157887792f1b 525757ef8f1926e4ca4003c061b71f73 { 'aliquot_tag': 'ALQ_7dd15bca', 'gdc_sample_type': 'Primary Tumor' } C3N-03884.RNA-Seq.genomic.T.hg38 C3N-03884 PDA RNA-Seq tumor CPT0237840010 48c47bf1-90db-4783-ad31-42eb9ef1c10f.rna_seq.genomic.gdc_realn.bam 7514768956 BAM genomic harmonized CPTAC3 101259b3-52fa-42cb-b837-e8a8636c67b7 8243b120ed3407f106c465ffb9588466 { 'aliquot_tag': 'ALQ_7dd15bca', 'gdc_sample_type': 'Primary Tumor' } -C3N-03884.RNA-Seq.R1_L001.T C3N-03884 PDA RNA-Seq tumor CPT0237840010 190725_UNC32-K00270_0194_AH7HHFBBXY_CAACAATG-CTTCACGG_S4_L001_R1_001.fastq.gz 2696062533 FASTQ R1_L001 unaligned CPTAC3 1678b0d3-790a-47c6-8932-84b97d78b646 50000a1bf8a43f5cfb02604be9a2f068 { 'aliquot_tag': 'ALQ_7dd15bca', 'gdc_sample_type': 'Primary Tumor' } -C3N-03884.RNA-Seq.R2_L001.T C3N-03884 PDA RNA-Seq tumor CPT0237840010 190725_UNC32-K00270_0194_AH7HHFBBXY_CAACAATG-CTTCACGG_S4_L001_R2_001.fastq.gz 2709463050 FASTQ R2_L001 unaligned CPTAC3 a8a094fa-5246-43bc-8935-4df5619244bc 953848572f69b52ac023b83c1080d1a9 { 'aliquot_tag': 'ALQ_7dd15bca', 'gdc_sample_type': 'Primary Tumor' } +C3N-03884.RNA-Seq.R1_L001.T C3N-03884 PDA RNA-Seq tumor CPT0237840010 190725_UNC32-K00270_0194_AH7HHFBBXY_CAACAATG-CTTCACGG_S4_L001_R1_001.fastq.gz 2696062533 FASTQ R1_L001 unaligned CPTAC3 1678b0d3-790a-47c6-8932-84b97d78b646 50000a1bf8a43f5cfb02604be9a2f068 { 'aliquot_tag': 'ALQ_7dd15bca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03884.RNA-Seq.R2_L001.T C3N-03884 PDA RNA-Seq tumor CPT0237840010 190725_UNC32-K00270_0194_AH7HHFBBXY_CAACAATG-CTTCACGG_S4_L001_R2_001.fastq.gz 2709463050 FASTQ R2_L001 unaligned CPTAC3 a8a094fa-5246-43bc-8935-4df5619244bc 953848572f69b52ac023b83c1080d1a9 { 'aliquot_tag': 'ALQ_7dd15bca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-03884.RNA-Seq.transcriptome.T.hg38 C3N-03884 PDA RNA-Seq tumor CPT0237840010 48c47bf1-90db-4783-ad31-42eb9ef1c10f.rna_seq.transcriptome.gdc_realn.bam 6134701698 BAM transcriptome harmonized CPTAC3 8472f05f-572b-40b9-bb13-5e01fe6746db bfb4636a0326b32350513039d7ceef10 { 'aliquot_tag': 'ALQ_7dd15bca', 'gdc_sample_type': 'Primary Tumor' } C3N-03884.WGS.N C3N-03884 PDA WGS blood_normal CPT0237890002 CPT0237890002.WholeGenome.RP-1303.bam 56628943971 BAM aligned CPTAC3 27da3126-fd91-4fd3-94a6-435ad06e2001 c1377b33d934b96c57b202cec5352277 { 'aliquot_tag': 'ALQ_7254cf16', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03884.WGS.N.hg38 C3N-03884 PDA WGS blood_normal CPT0237890002 5ba8387a-5795-4b55-8f83-9d3440b657f2_wgs_gdc_realn.bam 81522284921 BAM harmonized CPTAC3 94c56c37-9798-4a89-9078-f02d4a2f44d4 fb57f320d5c94e105278e68f17d658a3 { 'aliquot_tag': 'ALQ_7254cf16', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36699,9 +39059,9 @@ C3N-03886.MethArray.Red.T C3N-03886 LSCC Methylation Array tumor CPT0221650006 2 C3N-03886.miRNA-Seq.T C3N-03886 LSCC miRNA-Seq tumor CPT0221650009 190206_UNC31-K00269_0191_AH2WY5BBXY_GGCTAC_S38_L002_R1_001.unaln.bam 172303621 BAM unaligned CPTAC3 dca7c184-a415-4cf2-93dd-2c22957e7067 67e57a2177b23a1a117094421d6f4614 { 'aliquot_tag': 'ALQ_b506af4b', 'gdc_sample_type': 'Primary Tumor' } C3N-03886.miRNA-Seq.T.hg38 C3N-03886 LSCC miRNA-Seq tumor CPT0221650009 246fb493-3c11-410a-a37b-ea57dad4ad8d_mirnaseq_gdc_realn.bam 191671121 BAM harmonized CPTAC3 bf92552a-1335-48b5-a11b-1ce07c39b5b4 2f0bd3e78c05f692571290308668b0ca { 'aliquot_tag': 'ALQ_b506af4b', 'gdc_sample_type': 'Primary Tumor' } C3N-03886.RNA-Seq.chimeric.T.hg38 C3N-03886 LSCC RNA-Seq tumor CPT0221650009 bf964b60-61d7-47dd-9073-9aeaf97dd8ea.rna_seq.chimeric.gdc_realn.bam 45463265 BAM chimeric harmonized CPTAC3 232186f6-9195-4b80-b031-f769f402acb2 7ac6087f5788e553f2ced0b988e712a3 { 'aliquot_tag': 'ALQ_b506af4b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03886.RNA-Seq.genomic.T.hg38 C3N-03886 LSCC RNA-Seq tumor CPT0221650009 bf964b60-61d7-47dd-9073-9aeaf97dd8ea.rna_seq.genomic.gdc_realn.bam 15865791292 BAM genomic harmonized CPTAC3 5f5e831d-7db9-4e80-993f-9e7a90437da3 41ca848c6dd16f35ce3725af0f238429 { 'aliquot_tag': 'ALQ_b506af4b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03886.RNA-Seq.R1_L005.T C3N-03886 LSCC RNA-Seq tumor CPT0221650009 190205_UNC32-K00270_0144_BH3M3NBBXY_GGCTAC_S17_L005_R1_001.fastq.gz 4178740767 FASTQ R1_L005 unaligned CPTAC3 de33e2bb-7c5c-4f98-9b87-bec139d5e995 51b17fea925e3ebb6a4750eede56e6b1 { 'aliquot_tag': 'ALQ_b506af4b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03886.RNA-Seq.R2_L005.T C3N-03886 LSCC RNA-Seq tumor CPT0221650009 190205_UNC32-K00270_0144_BH3M3NBBXY_GGCTAC_S17_L005_R2_001.fastq.gz 4758890971 FASTQ R2_L005 unaligned CPTAC3 d58be8b5-b6c7-4bb2-b5da-d2d15d69e7e8 5f8b8c83417b0789391c784fcad2c150 { 'aliquot_tag': 'ALQ_b506af4b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03886.RNA-Seq.genomic.T.hg38 C3N-03886 LSCC RNA-Seq tumor CPT0221650009 bf964b60-61d7-47dd-9073-9aeaf97dd8ea.rna_seq.genomic.gdc_realn.bam 15865791292 BAM genomic harmonized CPTAC3 3266560c-3c0e-4bbd-a0e7-8871b63afab5 41ca848c6dd16f35ce3725af0f238429 { 'aliquot_tag': 'ALQ_b506af4b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03886.RNA-Seq.R1_L005.T C3N-03886 LSCC RNA-Seq tumor CPT0221650009 190205_UNC32-K00270_0144_BH3M3NBBXY_GGCTAC_S17_L005_R1_001.fastq.gz 4178740767 FASTQ R1_L005 unaligned CPTAC3 de33e2bb-7c5c-4f98-9b87-bec139d5e995 51b17fea925e3ebb6a4750eede56e6b1 { 'aliquot_tag': 'ALQ_b506af4b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03886.RNA-Seq.R2_L005.T C3N-03886 LSCC RNA-Seq tumor CPT0221650009 190205_UNC32-K00270_0144_BH3M3NBBXY_GGCTAC_S17_L005_R2_001.fastq.gz 4758890971 FASTQ R2_L005 unaligned CPTAC3 d58be8b5-b6c7-4bb2-b5da-d2d15d69e7e8 5f8b8c83417b0789391c784fcad2c150 { 'aliquot_tag': 'ALQ_b506af4b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } C3N-03886.RNA-Seq.transcriptome.T.hg38 C3N-03886 LSCC RNA-Seq tumor CPT0221650009 bf964b60-61d7-47dd-9073-9aeaf97dd8ea.rna_seq.transcriptome.gdc_realn.bam 7834382134 BAM transcriptome harmonized CPTAC3 aaa0f769-cae2-48ad-ba5f-b49f0d9555d0 3a4febaa20837ed9812745ff0028a38f { 'aliquot_tag': 'ALQ_b506af4b', 'gdc_sample_type': 'Primary Tumor' } C3N-03886.WGS.N C3N-03886 LSCC WGS blood_normal CPT0221750002 CPT0221750002.WholeGenome.RP-1303.bam 60925070171 BAM aligned CPTAC3 263085d9-f508-4475-8499-3b81d88f9904 5c87561c329cf78bfd493384715b8fe2 { 'aliquot_tag': 'ALQ_e988a566', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03886.WGS.N.hg38 C3N-03886 LSCC WGS blood_normal CPT0221750002 b3179798-a286-4505-b913-4b922716565c_wgs_gdc_realn.bam 88759881829 BAM harmonized CPTAC3 2718410a-0a35-41b7-81e0-c5ddc8fa8c31 76f1ec591272d81b8f48fa385f114212 { 'aliquot_tag': 'ALQ_e988a566', 'gdc_sample_type': 'Blood Derived Normal' } @@ -36723,16 +39083,19 @@ C3N-03888.miRNA-Seq.T C3N-03888 HNSCC miRNA-Seq tumor CPT0222180009 190228_UNC32 C3N-03888.miRNA-Seq.T.hg38 C3N-03888 HNSCC miRNA-Seq tumor CPT0222180009 2452b2f3-1b5b-4ac2-84bd-228b7b292fcc_mirnaseq_gdc_realn.bam 226713649 BAM harmonized CPTAC3 1321b9ca-bc13-4b17-a135-841d75caa5b0 bb2c6b5b631d724030487170f1084223 { 'aliquot_tag': 'ALQ_617b41df', 'gdc_sample_type': 'Primary Tumor' } C3N-03888.RNA-Seq.chimeric.A.hg38 C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 9b8d5e17-6ea7-42fe-9eff-f2c13ac24f61.rna_seq.chimeric.gdc_realn.bam 156733050 BAM chimeric harmonized CPTAC3 08bf9e2c-f376-46fb-b695-418251ae304c c8e3cfb76997861618ab89a0a93b6c8b { 'aliquot_tag': 'ALQ_d79f78b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03888.RNA-Seq.chimeric.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 2758c96d-c865-4c40-bb6b-2112716f382c.rna_seq.chimeric.gdc_realn.bam 247290708 BAM chimeric harmonized CPTAC3 42bfb5c6-c29e-44ac-9957-fd757b08357f 0c26510b366e494b7c3b84100fab839f { 'aliquot_tag': 'ALQ_617b41df', 'gdc_sample_type': 'Primary Tumor' } +C3N-03888.RNA-Seq.chimeric.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 3ed686c4-ad3d-4889-b667-6ced4cae4585.rna_seq.chimeric.gdc_realn.bam 75591505 BAM chimeric harmonized CPTAC3 73c53183-60b7-4aa1-a0cd-ea746bdcfe4b 4c56d8a8590e5a9844ed72a88af74c05 { 'aliquot_tag': 'ALQ_ba9f92a3', 'gdc_sample_type': 'Primary Tumor' } C3N-03888.RNA-Seq.genomic.A.hg38 C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 9b8d5e17-6ea7-42fe-9eff-f2c13ac24f61.rna_seq.genomic.gdc_realn.bam 6599835204 BAM genomic harmonized CPTAC3 a218d75a-5610-425e-b693-91cc200dee5d a3cf78ed26e039634f671f711d6217ad { 'aliquot_tag': 'ALQ_d79f78b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03888.RNA-Seq.genomic.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 2758c96d-c865-4c40-bb6b-2112716f382c.rna_seq.genomic.gdc_realn.bam 9766914846 BAM genomic harmonized CPTAC3 5845da8e-98db-4a44-a146-ce0a097e5237 6b4a25757e72c1b5d91d454392870857 { 'aliquot_tag': 'ALQ_617b41df', 'gdc_sample_type': 'Primary Tumor' } -C3N-03888.RNA-Seq.R1_L003.A C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 190328_UNC31-K00269_0204_BH5F5NBBXY_CAGATC_S10_L003_R1_001.fastq.gz 3030883408 FASTQ R1_L003 unaligned CPTAC3 fcc77279-5b11-48ef-a3dd-b8f405001db8 3ce1358dcb9b79668f390eeb70bfa6f3 { 'aliquot_tag': 'ALQ_d79f78b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03888.RNA-Seq.R1_L004.T C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 190328_UNC31-K00269_0204_BH5F5NBBXY_CGATGT_S14_L004_R1_001.fastq.gz 4553645416 FASTQ R1_L004 unaligned CPTAC3 17188511-f16d-405d-89fb-ed2ca75347f7 8e6a4fdad2cc5393ba888c39e47aa19e { 'aliquot_tag': 'ALQ_617b41df', 'gdc_sample_type': 'Primary Tumor' } -C3N-03888.RNA-Seq.R1_.T C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 20210714_P1_H9_WB7988_plate1_S92_R1_001.fastq.gz 3503178804 FASTQ R1_ unaligned CPTAC3 cebe98a9-1182-4016-af99-a4a2e46a85c1 f4839edd581684c751d417b1cb214173 { 'aliquot_tag': 'ALQ_ba9f92a3', 'gdc_sample_type': 'Primary Tumor' } -C3N-03888.RNA-Seq.R2_L003.A C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 190328_UNC31-K00269_0204_BH5F5NBBXY_CAGATC_S10_L003_R2_001.fastq.gz 3442612036 FASTQ R2_L003 unaligned CPTAC3 3c012358-3cb4-48ff-8d59-6f9569938efb 0b4237a627a62d42eb45e93ad7cb37e3 { 'aliquot_tag': 'ALQ_d79f78b0', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03888.RNA-Seq.R2_L004.T C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 190328_UNC31-K00269_0204_BH5F5NBBXY_CGATGT_S14_L004_R2_001.fastq.gz 4928814920 FASTQ R2_L004 unaligned CPTAC3 b765e30c-be42-4c21-a619-b408c14917a4 2807fb9668a6b0117649b96c4ce84206 { 'aliquot_tag': 'ALQ_617b41df', 'gdc_sample_type': 'Primary Tumor' } -C3N-03888.RNA-Seq.R2_.T C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 20210714_P1_H9_WB7988_plate1_S92_R2_001.fastq.gz 3694628358 FASTQ R2_ unaligned CPTAC3 09fe03e6-8b5e-4f61-8f56-e021b63f1dab bd333058683d32fc08237a8b19cdb785 { 'aliquot_tag': 'ALQ_ba9f92a3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03888.RNA-Seq.genomic.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 2758c96d-c865-4c40-bb6b-2112716f382c.rna_seq.genomic.gdc_realn.bam 9766914846 BAM genomic harmonized CPTAC3 70d7e6f4-2d37-4532-9a5b-ff2519e8fc5a 6b4a25757e72c1b5d91d454392870857 { 'aliquot_tag': 'ALQ_617b41df', 'gdc_sample_type': 'Primary Tumor' } +C3N-03888.RNA-Seq.genomic.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 3ed686c4-ad3d-4889-b667-6ced4cae4585.rna_seq.genomic.gdc_realn.bam 5649968948 BAM genomic harmonized CPTAC3 d7e4f485-6dba-4ac2-9d03-47cb3f1caded 93d40c51443272607cdffa77e9842259 { 'aliquot_tag': 'ALQ_ba9f92a3', 'gdc_sample_type': 'Primary Tumor' } +C3N-03888.RNA-Seq.R1_L003.A C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 190328_UNC31-K00269_0204_BH5F5NBBXY_CAGATC_S10_L003_R1_001.fastq.gz 3030883408 FASTQ R1_L003 unaligned CPTAC3 fcc77279-5b11-48ef-a3dd-b8f405001db8 3ce1358dcb9b79668f390eeb70bfa6f3 { 'aliquot_tag': 'ALQ_d79f78b0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03888.RNA-Seq.R1_L004.T C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 190328_UNC31-K00269_0204_BH5F5NBBXY_CGATGT_S14_L004_R1_001.fastq.gz 4553645416 FASTQ R1_L004 unaligned CPTAC3 17188511-f16d-405d-89fb-ed2ca75347f7 8e6a4fdad2cc5393ba888c39e47aa19e { 'aliquot_tag': 'ALQ_617b41df', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03888.RNA-Seq.R2_L003.A C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 190328_UNC31-K00269_0204_BH5F5NBBXY_CAGATC_S10_L003_R2_001.fastq.gz 3442612036 FASTQ R2_L003 unaligned CPTAC3 3c012358-3cb4-48ff-8d59-6f9569938efb 0b4237a627a62d42eb45e93ad7cb37e3 { 'aliquot_tag': 'ALQ_d79f78b0', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03888.RNA-Seq.R2_L004.T C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 190328_UNC31-K00269_0204_BH5F5NBBXY_CGATGT_S14_L004_R2_001.fastq.gz 4928814920 FASTQ R2_L004 unaligned CPTAC3 b765e30c-be42-4c21-a619-b408c14917a4 2807fb9668a6b0117649b96c4ce84206 { 'aliquot_tag': 'ALQ_617b41df', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03888.RNA-Seq.T C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 20210714_P1_H9_WB7988_plate1_S92_R1_001.fastq.gz 3503178804 FASTQ unaligned CPTAC3 cebe98a9-1182-4016-af99-a4a2e46a85c1 f4839edd581684c751d417b1cb214173 +C3N-03888.RNA-Seq.T C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 20210714_P1_H9_WB7988_plate1_S92_R2_001.fastq.gz 3694628358 FASTQ unaligned CPTAC3 09fe03e6-8b5e-4f61-8f56-e021b63f1dab bd333058683d32fc08237a8b19cdb785 C3N-03888.RNA-Seq.transcriptome.A.hg38 C3N-03888 HNSCC RNA-Seq tissue_normal CPT0222200009 9b8d5e17-6ea7-42fe-9eff-f2c13ac24f61.rna_seq.transcriptome.gdc_realn.bam 9418310106 BAM transcriptome harmonized CPTAC3 3a78d2cc-a7ae-4b9a-a583-0e889ec2ad79 043008e4882544abe32bc7b290d6f61b { 'aliquot_tag': 'ALQ_d79f78b0', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03888.RNA-Seq.transcriptome.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222180009 2758c96d-c865-4c40-bb6b-2112716f382c.rna_seq.transcriptome.gdc_realn.bam 13384821203 BAM transcriptome harmonized CPTAC3 c7f65f1c-4c2c-4307-a93d-4a204b740caf 1bd47433eb091a26cec610910ab85366 { 'aliquot_tag': 'ALQ_617b41df', 'gdc_sample_type': 'Primary Tumor' } +C3N-03888.RNA-Seq.transcriptome.T.hg38 C3N-03888 HNSCC RNA-Seq tumor CPT0222220011 3ed686c4-ad3d-4889-b667-6ced4cae4585.rna_seq.transcriptome.gdc_realn.bam 3873275061 BAM transcriptome harmonized CPTAC3 d76c908a-0374-4d3a-bca9-1685ff704c1e 77270d7fb60f9c50f8ceee9c6df7b9b2 { 'aliquot_tag': 'ALQ_ba9f92a3', 'gdc_sample_type': 'Primary Tumor' } C3N-03888.WGS.N C3N-03888 HNSCC WGS blood_normal CPT0222290002 CPT0222290002.WholeGenome.RP-1303.bam 90258196023 BAM aligned CPTAC3 c37f5e9e-4c06-4de4-874b-3d66cbfb99c8 98434f2cb51e00a82afe9dcc6e3a3a0c { 'aliquot_tag': 'ALQ_4d5dc349', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03888.WGS.N.hg38 C3N-03888 HNSCC WGS blood_normal CPT0222290002 86c78340-b7f1-4b1d-928e-86ce8f3894b3_wgs_gdc_realn.bam 131686408082 BAM harmonized CPTAC3 87a40420-6df6-4d45-a135-da580355a587 9552f9473cc334bdb5727bb451d71983 { 'aliquot_tag': 'ALQ_4d5dc349', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03888.WGS.T C3N-03888 HNSCC WGS tumor CPT0222180006 CPT0222180006.WholeGenome.RP-1303.bam 66960707763 BAM aligned CPTAC3 2d6dd5c7-8e55-4425-85d9-3988c2a1e086 9cfa4f227562f3e299560386cfefaec8 { 'aliquot_tag': 'ALQ_f1c45c4e', 'gdc_sample_type': 'Primary Tumor' } @@ -36753,16 +39116,19 @@ C3N-03889.miRNA-Seq.T C3N-03889 HNSCC miRNA-Seq tumor CPT0222360009 190228_UNC32 C3N-03889.miRNA-Seq.T.hg38 C3N-03889 HNSCC miRNA-Seq tumor CPT0222360009 dd3b5059-ee17-4418-b926-487464175aad_mirnaseq_gdc_realn.bam 287837655 BAM harmonized CPTAC3 6fdeab76-41c1-4664-8f46-6f9ce9a59ec4 c27185643e5df2cedf0600a64675cfc8 { 'aliquot_tag': 'ALQ_93835eb5', 'gdc_sample_type': 'Primary Tumor' } C3N-03889.RNA-Seq.chimeric.A.hg38 C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 52722565-916f-4657-bf0a-827c8935bdd8.rna_seq.chimeric.gdc_realn.bam 32679148 BAM chimeric harmonized CPTAC3 1c170672-dd11-4592-b87e-5ca02d516bc2 bfc67e0df034117dcf2f9f978c96c4be { 'aliquot_tag': 'ALQ_2cb3e0d4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03889.RNA-Seq.chimeric.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 4df44bd0-831c-4b4e-8c65-d118dec61087.rna_seq.chimeric.gdc_realn.bam 263211272 BAM chimeric harmonized CPTAC3 aa6e1c92-3145-4ce0-b566-2d8e73fd930b c4c671d21850f67ff6025433d14cc9e8 { 'aliquot_tag': 'ALQ_93835eb5', 'gdc_sample_type': 'Primary Tumor' } -C3N-03889.RNA-Seq.genomic.A.hg38 C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 52722565-916f-4657-bf0a-827c8935bdd8.rna_seq.genomic.gdc_realn.bam 9151960888 BAM genomic harmonized CPTAC3 f5f587bb-db3e-4076-b0df-864b6d35a313 fc6690035d8c571fe6b67956148cd294 { 'aliquot_tag': 'ALQ_2cb3e0d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03889.RNA-Seq.genomic.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 4df44bd0-831c-4b4e-8c65-d118dec61087.rna_seq.genomic.gdc_realn.bam 7612100018 BAM genomic harmonized CPTAC3 e42b1adc-93cd-41c2-9514-89ca71e7f6a0 ea9c63b354cc215614258eb04ea892d7 { 'aliquot_tag': 'ALQ_93835eb5', 'gdc_sample_type': 'Primary Tumor' } -C3N-03889.RNA-Seq.R1_L004.T C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 190328_UNC31-K00269_0204_BH5F5NBBXY_TTAGGC_S13_L004_R1_001.fastq.gz 3629732826 FASTQ R1_L004 unaligned CPTAC3 2221c762-196d-4b8b-ba2c-f4bdc53afd93 59d1bfe392776cfa1b75ae724c5960a8 { 'aliquot_tag': 'ALQ_93835eb5', 'gdc_sample_type': 'Primary Tumor' } -C3N-03889.RNA-Seq.R1_L005.A C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 190411_UNC31-K00269_0208_BH3W3KBBXY_TCTCTACT-CGCGGTTC_S21_L005_R1_001.fastq.gz 4036130771 FASTQ R1_L005 unaligned CPTAC3 f7e2adee-d8e3-4c03-b60e-ac195c5c288b 43396bf5e3c7ae3d96ddc6e0874b4ad0 { 'aliquot_tag': 'ALQ_2cb3e0d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03889.RNA-Seq.R1_.T C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 20210714_P1_B10_WB7988_plate1_S22_R1_001.fastq.gz 3729113005 FASTQ R1_ unaligned CPTAC3 ed2a9f0d-bfdf-4349-9bfe-df245ac6cccb 9250592a445668b043cb0c192f4e613a { 'aliquot_tag': 'ALQ_160622de', 'gdc_sample_type': 'Primary Tumor' } -C3N-03889.RNA-Seq.R2_L004.T C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 190328_UNC31-K00269_0204_BH5F5NBBXY_TTAGGC_S13_L004_R2_001.fastq.gz 3975259091 FASTQ R2_L004 unaligned CPTAC3 cacbff5a-955b-414d-a704-d6ec3a743d7a c2f1c21ef0e813f69a8dc679e319ef16 { 'aliquot_tag': 'ALQ_93835eb5', 'gdc_sample_type': 'Primary Tumor' } -C3N-03889.RNA-Seq.R2_L005.A C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 190411_UNC31-K00269_0208_BH3W3KBBXY_TCTCTACT-CGCGGTTC_S21_L005_R2_001.fastq.gz 4522765754 FASTQ R2_L005 unaligned CPTAC3 af496696-82f4-498d-8992-601da5f26bfc 5fa7abdd680c5402b26f0ee01a822908 { 'aliquot_tag': 'ALQ_2cb3e0d4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03889.RNA-Seq.R2_.T C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 20210714_P1_B10_WB7988_plate1_S22_R2_001.fastq.gz 3990982392 FASTQ R2_ unaligned CPTAC3 785c8c78-71a9-4323-894a-ca12b22f91bd a4b990da1171147e43c23ade27a4741d { 'aliquot_tag': 'ALQ_160622de', 'gdc_sample_type': 'Primary Tumor' } +C3N-03889.RNA-Seq.chimeric.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 e4c0db3d-1759-4db9-939f-f69fc274d161.rna_seq.chimeric.gdc_realn.bam 87999035 BAM chimeric harmonized CPTAC3 583933ad-d66c-4ca8-87c8-ac9e0fb5f379 5eef62e7887da275b9151092280ff1e9 { 'aliquot_tag': 'ALQ_160622de', 'gdc_sample_type': 'Primary Tumor' } +C3N-03889.RNA-Seq.genomic.A.hg38 C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 52722565-916f-4657-bf0a-827c8935bdd8.rna_seq.genomic.gdc_realn.bam 9151960888 BAM genomic harmonized CPTAC3 afe2ffe6-e9fd-4e96-9493-1a0f269ae0cf fc6690035d8c571fe6b67956148cd294 { 'aliquot_tag': 'ALQ_2cb3e0d4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03889.RNA-Seq.genomic.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 4df44bd0-831c-4b4e-8c65-d118dec61087.rna_seq.genomic.gdc_realn.bam 7612100018 BAM genomic harmonized CPTAC3 d1f6235f-379a-4ac9-b376-2e5f4690a28d ea9c63b354cc215614258eb04ea892d7 { 'aliquot_tag': 'ALQ_93835eb5', 'gdc_sample_type': 'Primary Tumor' } +C3N-03889.RNA-Seq.genomic.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 e4c0db3d-1759-4db9-939f-f69fc274d161.rna_seq.genomic.gdc_realn.bam 6363825981 BAM genomic harmonized CPTAC3 b4bf2783-f50f-490d-9639-00ce93ab506a b46acf67a48923600e28cf19bd3cc03a { 'aliquot_tag': 'ALQ_160622de', 'gdc_sample_type': 'Primary Tumor' } +C3N-03889.RNA-Seq.R1_L004.T C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 190328_UNC31-K00269_0204_BH5F5NBBXY_TTAGGC_S13_L004_R1_001.fastq.gz 3629732826 FASTQ R1_L004 unaligned CPTAC3 2221c762-196d-4b8b-ba2c-f4bdc53afd93 59d1bfe392776cfa1b75ae724c5960a8 { 'aliquot_tag': 'ALQ_93835eb5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03889.RNA-Seq.R1_L005.A C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 190411_UNC31-K00269_0208_BH3W3KBBXY_TCTCTACT-CGCGGTTC_S21_L005_R1_001.fastq.gz 4036130771 FASTQ R1_L005 unaligned CPTAC3 f7e2adee-d8e3-4c03-b60e-ac195c5c288b 43396bf5e3c7ae3d96ddc6e0874b4ad0 { 'aliquot_tag': 'ALQ_2cb3e0d4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03889.RNA-Seq.R2_L004.T C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 190328_UNC31-K00269_0204_BH5F5NBBXY_TTAGGC_S13_L004_R2_001.fastq.gz 3975259091 FASTQ R2_L004 unaligned CPTAC3 cacbff5a-955b-414d-a704-d6ec3a743d7a c2f1c21ef0e813f69a8dc679e319ef16 { 'aliquot_tag': 'ALQ_93835eb5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03889.RNA-Seq.R2_L005.A C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 190411_UNC31-K00269_0208_BH3W3KBBXY_TCTCTACT-CGCGGTTC_S21_L005_R2_001.fastq.gz 4522765754 FASTQ R2_L005 unaligned CPTAC3 af496696-82f4-498d-8992-601da5f26bfc 5fa7abdd680c5402b26f0ee01a822908 { 'aliquot_tag': 'ALQ_2cb3e0d4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03889.RNA-Seq.T C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 20210714_P1_B10_WB7988_plate1_S22_R1_001.fastq.gz 3729113005 FASTQ unaligned CPTAC3 ed2a9f0d-bfdf-4349-9bfe-df245ac6cccb 9250592a445668b043cb0c192f4e613a +C3N-03889.RNA-Seq.T C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 20210714_P1_B10_WB7988_plate1_S22_R2_001.fastq.gz 3990982392 FASTQ unaligned CPTAC3 785c8c78-71a9-4323-894a-ca12b22f91bd a4b990da1171147e43c23ade27a4741d C3N-03889.RNA-Seq.transcriptome.A.hg38 C3N-03889 HNSCC RNA-Seq tissue_normal CPT0222380009 52722565-916f-4657-bf0a-827c8935bdd8.rna_seq.transcriptome.gdc_realn.bam 9388371473 BAM transcriptome harmonized CPTAC3 f09ac40c-ac0e-4193-9c2f-f94338799e1a 1c10be29eadac4e47359ef9f3deb7569 { 'aliquot_tag': 'ALQ_2cb3e0d4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03889.RNA-Seq.transcriptome.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222360009 4df44bd0-831c-4b4e-8c65-d118dec61087.rna_seq.transcriptome.gdc_realn.bam 10126858979 BAM transcriptome harmonized CPTAC3 b62bcad8-e467-4002-adc0-d2246def818a c4c957a1f448210fef950957bcba923f { 'aliquot_tag': 'ALQ_93835eb5', 'gdc_sample_type': 'Primary Tumor' } +C3N-03889.RNA-Seq.transcriptome.T.hg38 C3N-03889 HNSCC RNA-Seq tumor CPT0222400011 e4c0db3d-1759-4db9-939f-f69fc274d161.rna_seq.transcriptome.gdc_realn.bam 5356521464 BAM transcriptome harmonized CPTAC3 f18c21c7-5560-414b-ba11-bf8e41a12f21 006862222afdea02f3f96464968c247f { 'aliquot_tag': 'ALQ_160622de', 'gdc_sample_type': 'Primary Tumor' } C3N-03889.WGS.N C3N-03889 HNSCC WGS blood_normal CPT0222470002 CPT0222470002.WholeGenome.RP-1303.bam 71054681959 BAM aligned CPTAC3 4c231465-15c4-41ec-b0f9-111611d8233f df2c66612ede5e913c99d20e74e8a853 { 'aliquot_tag': 'ALQ_24349e35', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03889.WGS.N.hg38 C3N-03889 HNSCC WGS blood_normal CPT0222470002 f7210b31-9dd5-48f5-b101-dd58e93f7dc0_wgs_gdc_realn.bam 102403966142 BAM harmonized CPTAC3 41ed5788-2219-4055-9e2e-c432891610c3 bebae1be7a3280a09b2282c28c427280 { 'aliquot_tag': 'ALQ_24349e35', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03889.WGS.T C3N-03889 HNSCC WGS tumor CPT0222360006 CPT0222360006.WholeGenome.RP-1303.bam 90507531333 BAM aligned CPTAC3 c3e4d20a-57c4-4565-9adc-20759fd796aa 7f4ae4dc2c80c7aeb01eb255b299f01e { 'aliquot_tag': 'ALQ_33c4324', 'gdc_sample_type': 'Primary Tumor' } @@ -36781,16 +39147,16 @@ C3N-03890.miRNA-Seq.A C3N-03890 LUAD miRNA-Seq tissue_normal CPT0221380009 19072 C3N-03890.miRNA-Seq.A.hg38 C3N-03890 LUAD miRNA-Seq tissue_normal CPT0221380009 62c51923-643e-4aae-9c48-6c13dac1be39_mirnaseq_gdc_realn.bam 235313305 BAM harmonized CPTAC3 a4b8f018-a6ed-4bc5-99cd-6dd23b39ead9 95b080f6e427a7213da97aecaa954688 { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03890.miRNA-Seq.T C3N-03890 LUAD miRNA-Seq tumor CPT0221310009 190722_UNC31-K00269_0234_AH7VGTBBXY_CCGTCC_S12_L007_R1_001.unaln.bam 161722924 BAM unaligned CPTAC3 9d3aadc0-d369-4040-86fa-9524dfd16711 ec66f4e1a315805feddc11727e03c459 { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor' } C3N-03890.miRNA-Seq.T.hg38 C3N-03890 LUAD miRNA-Seq tumor CPT0221310009 c450929c-3b2a-4495-91dd-a52cd6f2bf5b_mirnaseq_gdc_realn.bam 177514108 BAM harmonized CPTAC3 a0b6e533-7141-4c30-b920-b025825152a2 326bd6f0f6d1a9c0c49f3b12f1b9db69 { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor' } -C3N-03890.RNA-Seq.chimeric.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 af62d84f-c366-47d9-b41e-37aa66c1f9e2.rna_seq.chimeric.gdc_realn.bam 39942351 BAM chimeric harmonized CPTAC3 aebfb18f-3410-4ef3-a4eb-4b9b4a4907ae 324950c9f622aa3d0223cf43c779783e { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03890.RNA-Seq.chimeric.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 780d9e7d-ea6c-418a-a805-3845d3e60875.rna_seq.chimeric.gdc_realn.bam 28052558 BAM chimeric harmonized CPTAC3 22167121-3c5a-4868-8c43-a7cd480d2264 f4d6d1047e8cbd4f1a2e573263674722 { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor' } -C3N-03890.RNA-Seq.genomic.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 af62d84f-c366-47d9-b41e-37aa66c1f9e2.rna_seq.genomic.gdc_realn.bam 13915711411 BAM genomic harmonized CPTAC3 2e6a5350-2c26-4413-813e-34d35122a617 8d1c34cec01591f5d37e74769b8c9fb5 { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03890.RNA-Seq.genomic.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 780d9e7d-ea6c-418a-a805-3845d3e60875.rna_seq.genomic.gdc_realn.bam 9546361641 BAM genomic harmonized CPTAC3 1758163b-2d0a-487d-9273-185ac804a882 ca0544a7730d5ad7bdc0b6fbbe28b852 { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor' } -C3N-03890.RNA-Seq.R1_L006.A C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 190607_UNC32-K00270_0179_BH75W2BBXY_CCGCGGTT-AGCGCTAG_S23_L006_R1_001.fastq.gz 4773370680 FASTQ R1_L006 unaligned CPTAC3 11ce8013-1cdf-4669-94a2-ba54b3b438bb 20205530ca128c6d9d86f01af77a3c9b { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03890.RNA-Seq.R1_L008.T C3N-03890 LUAD RNA-Seq tumor CPT0221310009 190607_UNC32-K00270_0178_AH773TBBXY_CCATTCGA-GTTGTCCG_S30_L008_R1_001.fastq.gz 3627021987 FASTQ R1_L008 unaligned CPTAC3 aa2582cc-7725-4526-b8aa-7efbace71be6 cc335c33ac18a6543a107036676c564e { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor' } -C3N-03890.RNA-Seq.R2_L006.A C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 190607_UNC32-K00270_0179_BH75W2BBXY_CCGCGGTT-AGCGCTAG_S23_L006_R2_001.fastq.gz 5362843017 FASTQ R2_L006 unaligned CPTAC3 da3734ae-be56-401f-bb22-b89c6fd0ff8b 00162898366b32f06f51878676a9c4ca { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03890.RNA-Seq.R2_L008.T C3N-03890 LUAD RNA-Seq tumor CPT0221310009 190607_UNC32-K00270_0178_AH773TBBXY_CCATTCGA-GTTGTCCG_S30_L008_R2_001.fastq.gz 4024876278 FASTQ R2_L008 unaligned CPTAC3 8cc02255-1420-4f2d-9cc8-9f3ffdc52225 a91ae6a94618d31e916f1ff1f4b940b2 { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor' } -C3N-03890.RNA-Seq.transcriptome.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 af62d84f-c366-47d9-b41e-37aa66c1f9e2.rna_seq.transcriptome.gdc_realn.bam 8700900555 BAM transcriptome harmonized CPTAC3 4ea3e42d-3039-464d-ad6b-5b765356b924 aac2f74afa040ad1a6bc32f3a86b8c1b { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03890.RNA-Seq.transcriptome.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 780d9e7d-ea6c-418a-a805-3845d3e60875.rna_seq.transcriptome.gdc_realn.bam 6465460945 BAM transcriptome harmonized CPTAC3 9f3c1d0e-fc47-473d-93d8-9431200e4056 96f59708e645af5cd805e0e4b5550cf6 { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor' } +C3N-03890.RNA-Seq.chimeric.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 ca52d85f-cc95-43f7-9bf4-7d4ee30a007c.rna_seq.chimeric.gdc_realn.bam 39929627 BAM chimeric harmonized CPTAC3 23c56b38-3d79-47a7-a02f-a0825fbde505 3ea0b203b09914f5a8d268f1e3f91eb1 { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03890.RNA-Seq.chimeric.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 d6137777-b252-4166-9298-041eccc6f1da.rna_seq.chimeric.gdc_realn.bam 28053030 BAM chimeric harmonized CPTAC3 e615b15a-69cb-417f-bb8d-e737aa13f146 61de9350a5654b33fb6137e96aea955c { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor' } +C3N-03890.RNA-Seq.genomic.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 ca52d85f-cc95-43f7-9bf4-7d4ee30a007c.rna_seq.genomic.gdc_realn.bam 13916360259 BAM genomic harmonized CPTAC3 71f9cb07-5d7d-44d8-a541-90e35d49ffde 585d557dab872eb00531a4527c7b75f4 { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03890.RNA-Seq.genomic.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 d6137777-b252-4166-9298-041eccc6f1da.rna_seq.genomic.gdc_realn.bam 9547444686 BAM genomic harmonized CPTAC3 54fb3d25-6d68-4b89-a6d9-5beb1b12de30 6402002f3cd692f4b458113b4e001ce1 { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor' } +C3N-03890.RNA-Seq.R1_L006.A C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 190607_UNC32-K00270_0179_BH75W2BBXY_CCGCGGTT-AGCGCTAG_S23_L006_R1_001.fastq.gz 4773370680 FASTQ R1_L006 unaligned CPTAC3 11ce8013-1cdf-4669-94a2-ba54b3b438bb 20205530ca128c6d9d86f01af77a3c9b { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03890.RNA-Seq.R1_L008.T C3N-03890 LUAD RNA-Seq tumor CPT0221310009 190607_UNC32-K00270_0178_AH773TBBXY_CCATTCGA-GTTGTCCG_S30_L008_R1_001.fastq.gz 3627021987 FASTQ R1_L008 unaligned CPTAC3 aa2582cc-7725-4526-b8aa-7efbace71be6 cc335c33ac18a6543a107036676c564e { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03890.RNA-Seq.R2_L006.A C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 190607_UNC32-K00270_0179_BH75W2BBXY_CCGCGGTT-AGCGCTAG_S23_L006_R2_001.fastq.gz 5362843017 FASTQ R2_L006 unaligned CPTAC3 da3734ae-be56-401f-bb22-b89c6fd0ff8b 00162898366b32f06f51878676a9c4ca { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-03890.RNA-Seq.R2_L008.T C3N-03890 LUAD RNA-Seq tumor CPT0221310009 190607_UNC32-K00270_0178_AH773TBBXY_CCATTCGA-GTTGTCCG_S30_L008_R2_001.fastq.gz 4024876278 FASTQ R2_L008 unaligned CPTAC3 8cc02255-1420-4f2d-9cc8-9f3ffdc52225 a91ae6a94618d31e916f1ff1f4b940b2 { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03890.RNA-Seq.transcriptome.A.hg38 C3N-03890 LUAD RNA-Seq tissue_normal CPT0221380009 ca52d85f-cc95-43f7-9bf4-7d4ee30a007c.rna_seq.transcriptome.gdc_realn.bam 9813883645 BAM transcriptome harmonized CPTAC3 5a5eff19-12ea-4120-89af-a50dc1b3701a eaaa924b3465bdd94c37bd7ef8741187 { 'aliquot_tag': 'ALQ_1d5bfa49', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03890.RNA-Seq.transcriptome.T.hg38 C3N-03890 LUAD RNA-Seq tumor CPT0221310009 d6137777-b252-4166-9298-041eccc6f1da.rna_seq.transcriptome.gdc_realn.bam 7285341880 BAM transcriptome harmonized CPTAC3 6fe41965-a28f-456b-8543-ff3262493652 5a8ca94199f353cd485ed1ca625b7ecd { 'aliquot_tag': 'ALQ_104b9838', 'gdc_sample_type': 'Primary Tumor' } C3N-03890.WGS.N C3N-03890 LUAD WGS blood_normal CPT0221560002 CPT0221560002.WholeGenome.RP-1303.bam 81732490427 BAM aligned CPTAC3 cc9cfe88-937d-45b5-8c56-ce4f2e39eaa2 a85d4791c6095adc1d266faa67225d73 { 'aliquot_tag': 'ALQ_e3e07ebd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03890.WGS.N.hg38 C3N-03890 LUAD WGS blood_normal CPT0221560002 7dd43c6c-2f91-4bec-92e4-be52d8a1700f_wgs_gdc_realn.bam 118835828080 BAM harmonized CPTAC3 dc291ec4-2f8d-4969-8c91-42fbdb5c0119 ac426b58d5d0db108e96d35ac9ec048b { 'aliquot_tag': 'ALQ_e3e07ebd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03890.WGS.T C3N-03890 LUAD WGS tumor CPT0221310006 CPT0221310006.WholeGenome.RP-1303.bam 76421517824 BAM aligned CPTAC3 11b43de6-fc0a-46a1-9ca6-87b917eab8fc a1c3a9acbf7e3dfd1dccde349f9572ab { 'aliquot_tag': 'ALQ_80f485a9', 'gdc_sample_type': 'Primary Tumor' } @@ -36809,16 +39175,16 @@ C3N-03911.miRNA-Seq.A C3N-03911 LUAD miRNA-Seq tissue_normal CPT0223640006 19072 C3N-03911.miRNA-Seq.A.hg38 C3N-03911 LUAD miRNA-Seq tissue_normal CPT0223640006 a3bd6655-2ce2-4eb3-b10c-22dae5b754ce_mirnaseq_gdc_realn.bam 196498005 BAM harmonized CPTAC3 c16019cd-77c6-46fe-940d-fd5f367f5274 c3a14275cd78df840ff0fca0c9973d7f { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03911.miRNA-Seq.T C3N-03911 LUAD miRNA-Seq tumor CPT0223610009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACTCA_S26_L004_R1_001.unaln.bam 247283715 BAM unaligned CPTAC3 ed3ef7be-8630-472b-9d30-d325b9c9bd62 242e6af4977e36fd2a685c8b752941b3 { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor' } C3N-03911.miRNA-Seq.T.hg38 C3N-03911 LUAD miRNA-Seq tumor CPT0223610009 ff2741b1-bd2d-4437-8421-629a53b19b6c_mirnaseq_gdc_realn.bam 278278728 BAM harmonized CPTAC3 6d83cd1b-ff37-437c-b330-84c557600d5e 8d0edd8c934a65d1ed3d50a624a640b9 { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-03911.RNA-Seq.chimeric.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 722e9600-6802-4f42-abfa-312287369e86.rna_seq.chimeric.gdc_realn.bam 26050890 BAM chimeric harmonized CPTAC3 2b9d0d67-5116-4c1b-8c9d-82057e9f7f0d 85a88302d3e62e3b4c4f53004654383e { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03911.RNA-Seq.chimeric.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 885e10e3-5fa0-4514-9334-ece568fec908.rna_seq.chimeric.gdc_realn.bam 40908976 BAM chimeric harmonized CPTAC3 7811a7c6-e49c-48dd-badc-3d4049306a99 0cf0259ff68e004bdad547a450ed56a5 { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-03911.RNA-Seq.genomic.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 722e9600-6802-4f42-abfa-312287369e86.rna_seq.genomic.gdc_realn.bam 9528837951 BAM genomic harmonized CPTAC3 057d06c4-6533-4a51-8e8e-ad8fa47cad61 35e51e2d0456f8963de50d76664f0928 { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03911.RNA-Seq.genomic.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 885e10e3-5fa0-4514-9334-ece568fec908.rna_seq.genomic.gdc_realn.bam 14941857300 BAM genomic harmonized CPTAC3 65b7ba98-da13-44b7-9b2a-e5c48093dcb9 a42c09cc6f209fcad0395dc582a5d882 { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-03911.RNA-Seq.R1_L007.T C3N-03911 LUAD RNA-Seq tumor CPT0223610009 190604_UNC32-K00270_0177_AH7F5VBBXY_AATGCCTC-TCGATCCA_S28_L007_R1_001.fastq.gz 5205141169 FASTQ R1_L007 unaligned CPTAC3 98425bec-6e8e-4116-9059-200a44880bd3 17983b0086309b8aba0c74e1e067928f { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-03911.RNA-Seq.R1_L008.A C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 190607_UNC32-K00270_0178_AH773TBBXY_GTGTCGGA-GCTTGCGC_S32_L008_R1_001.fastq.gz 3394815688 FASTQ R1_L008 unaligned CPTAC3 926f1f32-f11b-48f4-ba04-a70f3d66a3d6 f3073f51ac9033cfdc7f079b18807b16 { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03911.RNA-Seq.R2_L007.T C3N-03911 LUAD RNA-Seq tumor CPT0223610009 190604_UNC32-K00270_0177_AH7F5VBBXY_AATGCCTC-TCGATCCA_S28_L007_R2_001.fastq.gz 5733156960 FASTQ R2_L007 unaligned CPTAC3 ee3fa35f-834a-4a2e-be95-6700b485b7fd 9ce9586faa9d9c2e2a114d6d981f7ed7 { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor' } -C3N-03911.RNA-Seq.R2_L008.A C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 190607_UNC32-K00270_0178_AH773TBBXY_GTGTCGGA-GCTTGCGC_S32_L008_R2_001.fastq.gz 3902481764 FASTQ R2_L008 unaligned CPTAC3 84fc593b-48ad-4e4b-bc97-9e6432fa21ea b73bd5c9b4dd722d0a64a689426c876d { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03911.RNA-Seq.transcriptome.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 722e9600-6802-4f42-abfa-312287369e86.rna_seq.transcriptome.gdc_realn.bam 7090043139 BAM transcriptome harmonized CPTAC3 dfd950da-5f96-45a2-9c31-6802fd35f859 903a3fbeebaa3d8b1bafe5201b3b14e0 { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03911.RNA-Seq.transcriptome.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 885e10e3-5fa0-4514-9334-ece568fec908.rna_seq.transcriptome.gdc_realn.bam 11623163472 BAM transcriptome harmonized CPTAC3 a13bfefc-bb89-49d8-9cc5-acc87b817644 a9dede50e998f1b2eba2f1dee94084e7 { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor' } +C3N-03911.RNA-Seq.chimeric.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 8dbdbb8d-cb43-42b3-a653-e8575a22daf5.rna_seq.chimeric.gdc_realn.bam 26028369 BAM chimeric harmonized CPTAC3 ed96b321-0dcf-42e2-821f-ffb726f355b5 49cb6f3bd78645da0ab53d4f13fd51c0 { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03911.RNA-Seq.chimeric.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 88d816d0-b308-4255-a6d9-e71133850bb0.rna_seq.chimeric.gdc_realn.bam 40900399 BAM chimeric harmonized CPTAC3 f65dff08-8324-4cbd-a0d3-ec7862645d2b ac06477b83698cc833366edd1a83b059 { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor' } +C3N-03911.RNA-Seq.genomic.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 8dbdbb8d-cb43-42b3-a653-e8575a22daf5.rna_seq.genomic.gdc_realn.bam 9529977879 BAM genomic harmonized CPTAC3 32da2cc3-b99f-4c09-8314-caf9d42fb28d e2a47ef5ccd1c620c0dec9563cd0e6d2 { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03911.RNA-Seq.genomic.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 88d816d0-b308-4255-a6d9-e71133850bb0.rna_seq.genomic.gdc_realn.bam 14943562001 BAM genomic harmonized CPTAC3 40de78a4-3c9e-4488-bff6-556dddbb51d2 963bc9f78f5036811eca60b6ab9b605c { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor' } +C3N-03911.RNA-Seq.R1_L007.T C3N-03911 LUAD RNA-Seq tumor CPT0223610009 190604_UNC32-K00270_0177_AH7F5VBBXY_AATGCCTC-TCGATCCA_S28_L007_R1_001.fastq.gz 5205141169 FASTQ R1_L007 unaligned CPTAC3 98425bec-6e8e-4116-9059-200a44880bd3 17983b0086309b8aba0c74e1e067928f { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-03911.RNA-Seq.R1_L008.A C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 190607_UNC32-K00270_0178_AH773TBBXY_GTGTCGGA-GCTTGCGC_S32_L008_R1_001.fastq.gz 3394815688 FASTQ R1_L008 unaligned CPTAC3 926f1f32-f11b-48f4-ba04-a70f3d66a3d6 f3073f51ac9033cfdc7f079b18807b16 { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-03911.RNA-Seq.R2_L007.T C3N-03911 LUAD RNA-Seq tumor CPT0223610009 190604_UNC32-K00270_0177_AH7F5VBBXY_AATGCCTC-TCGATCCA_S28_L007_R2_001.fastq.gz 5733156960 FASTQ R2_L007 unaligned CPTAC3 ee3fa35f-834a-4a2e-be95-6700b485b7fd 9ce9586faa9d9c2e2a114d6d981f7ed7 { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-03911.RNA-Seq.R2_L008.A C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 190607_UNC32-K00270_0178_AH773TBBXY_GTGTCGGA-GCTTGCGC_S32_L008_R2_001.fastq.gz 3902481764 FASTQ R2_L008 unaligned CPTAC3 84fc593b-48ad-4e4b-bc97-9e6432fa21ea b73bd5c9b4dd722d0a64a689426c876d { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-03911.RNA-Seq.transcriptome.A.hg38 C3N-03911 LUAD RNA-Seq tissue_normal CPT0223640006 8dbdbb8d-cb43-42b3-a653-e8575a22daf5.rna_seq.transcriptome.gdc_realn.bam 8022797660 BAM transcriptome harmonized CPTAC3 fb91c457-4fd7-4aab-8fc9-911dc15059ef 716cfc7c3e8fb7b40e5d1eebff5ceaca { 'aliquot_tag': 'ALQ_8f468a43', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03911.RNA-Seq.transcriptome.T.hg38 C3N-03911 LUAD RNA-Seq tumor CPT0223610009 88d816d0-b308-4255-a6d9-e71133850bb0.rna_seq.transcriptome.gdc_realn.bam 13067933414 BAM transcriptome harmonized CPTAC3 70592869-e23b-4c3e-b3e0-dfc023638a94 f1ca5cf59218b98065b6ed0e3de53f4b { 'aliquot_tag': 'ALQ_d71918a2', 'gdc_sample_type': 'Primary Tumor' } C3N-03911.WGS.N C3N-03911 LUAD WGS blood_normal CPT0223730002 CPT0223730002.WholeGenome.RP-1303.bam 67350523077 BAM aligned CPTAC3 97bbd555-86dc-40c6-9cd0-c4c0628f1569 a299da55405fc8485ace67b36d3eac32 { 'aliquot_tag': 'ALQ_f15741ef', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03911.WGS.N.hg38 C3N-03911 LUAD WGS blood_normal CPT0223730002 db2d715b-de33-4265-9e4f-6b6d06bbcf77_wgs_gdc_realn.bam 98466515208 BAM harmonized CPTAC3 42cd263e-ee58-4d10-bd75-8437810ef8db edde4b809a6876cdd30761cd37eeb362 { 'aliquot_tag': 'ALQ_f15741ef', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03911.WGS.T C3N-03911 LUAD WGS tumor CPT0223610006 CPT0223610006.WholeGenome.RP-1303.bam 52525817199 BAM aligned CPTAC3 93735a47-615f-4744-a4a9-b4d847aa56a4 ca2a147d0eb8a36e4bfb98733d9e27a2 { 'aliquot_tag': 'ALQ_47a60533', 'gdc_sample_type': 'Primary Tumor' } @@ -36837,16 +39203,16 @@ C3N-03921.miRNA-Seq.A C3N-03921 LUAD miRNA-Seq tissue_normal CPT0223280009 19072 C3N-03921.miRNA-Seq.A.hg38 C3N-03921 LUAD miRNA-Seq tissue_normal CPT0223280009 eb98f7d1-d002-46b3-8276-1fac3538f6c1_mirnaseq_gdc_realn.bam 290854687 BAM harmonized CPTAC3 b4209503-995c-4572-82d9-684fbc338b21 8cf4866d03900d16f63eef61053c83c2 { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03921.miRNA-Seq.T C3N-03921 LUAD miRNA-Seq tumor CPT0223260009 190722_UNC31-K00269_0234_AH7VGTBBXY_GTAGAG_S13_L007_R1_001.unaln.bam 178601708 BAM unaligned CPTAC3 4a37b01b-4ddb-4431-9eec-f20c9fe54824 dd17325589c1b2465a0b26def2b1adbe { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor' } C3N-03921.miRNA-Seq.T.hg38 C3N-03921 LUAD miRNA-Seq tumor CPT0223260009 bb417eb3-e59d-44ed-a7a9-6294c94c4a69_mirnaseq_gdc_realn.bam 196094028 BAM harmonized CPTAC3 a7988fb9-65fe-4623-83af-ce689c458ed5 947f24bcf9d461b2855d9a862cd4e94a { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-03921.RNA-Seq.chimeric.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 1a7ccd88-29a6-4946-bdb2-cb61e3f08163.rna_seq.chimeric.gdc_realn.bam 44041796 BAM chimeric harmonized CPTAC3 aba83484-bee9-4ed3-8dc4-7af70d2ca08d 121abae7568e53ee66c5bbf1be2aafeb { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03921.RNA-Seq.chimeric.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 934c141c-5177-4386-b961-0cc249496648.rna_seq.chimeric.gdc_realn.bam 35421757 BAM chimeric harmonized CPTAC3 915adc25-1350-4bda-94a0-41e8c1bdb3cf 6b21b01000c8e74e821cc48c31fb1ed3 { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-03921.RNA-Seq.genomic.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 1a7ccd88-29a6-4946-bdb2-cb61e3f08163.rna_seq.genomic.gdc_realn.bam 13406945204 BAM genomic harmonized CPTAC3 4add7489-02b9-438c-9986-38b8ed11c6ec 2ee95b71e6f7c9b071bad53ba981a653 { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03921.RNA-Seq.genomic.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 934c141c-5177-4386-b961-0cc249496648.rna_seq.genomic.gdc_realn.bam 12499851720 BAM genomic harmonized CPTAC3 4aec53c0-fdf6-4773-9eef-88af8aca2bb8 c5b0226226cca0422d271f9a09f5539f { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-03921.RNA-Seq.R1_L006.A C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 190607_UNC32-K00270_0179_BH75W2BBXY_TTATAACC-GATATCGA_S22_L006_R1_001.fastq.gz 4759625511 FASTQ R1_L006 unaligned CPTAC3 367ab8a5-931b-41d4-9144-ae59e09b9c0a 972900174e5c4c17356a868e26d81596 { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03921.RNA-Seq.R1_L008.T C3N-03921 LUAD RNA-Seq tumor CPT0223260009 190607_UNC32-K00270_0178_AH773TBBXY_ACACTAAG-ATCCATAT_S31_L008_R1_001.fastq.gz 4740602776 FASTQ R1_L008 unaligned CPTAC3 7881cf5e-17a2-412c-ad03-c1738c003666 ee69d2111bd851c723ef43a41e624fae { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-03921.RNA-Seq.R2_L006.A C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 190607_UNC32-K00270_0179_BH75W2BBXY_TTATAACC-GATATCGA_S22_L006_R2_001.fastq.gz 4906699320 FASTQ R2_L006 unaligned CPTAC3 77fac69d-a38b-4b26-8928-d9385eae7070 e90dab656fbac7b34a002ec76fd70a9e { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03921.RNA-Seq.R2_L008.T C3N-03921 LUAD RNA-Seq tumor CPT0223260009 190607_UNC32-K00270_0178_AH773TBBXY_ACACTAAG-ATCCATAT_S31_L008_R2_001.fastq.gz 5200451436 FASTQ R2_L008 unaligned CPTAC3 1b90d3b5-254f-4f2e-83b2-aa2d5cd5d654 1ce0915f56da3450cd8cbb0c948a900a { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor' } -C3N-03921.RNA-Seq.transcriptome.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 1a7ccd88-29a6-4946-bdb2-cb61e3f08163.rna_seq.transcriptome.gdc_realn.bam 8688039022 BAM transcriptome harmonized CPTAC3 0c9e6b15-4d1d-4290-924e-442fb823f60b 01f08fc12f8ef5462af15e209619916c { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03921.RNA-Seq.transcriptome.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 934c141c-5177-4386-b961-0cc249496648.rna_seq.transcriptome.gdc_realn.bam 9577588552 BAM transcriptome harmonized CPTAC3 0d56091e-1e14-4f04-b363-b6475f728786 dffd037b120265561ee5c9fe6357d1a1 { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-03921.RNA-Seq.chimeric.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 994a0fa9-fe92-446e-b26c-0096498e75e1.rna_seq.chimeric.gdc_realn.bam 44027776 BAM chimeric harmonized CPTAC3 6bca6c95-cc4c-48da-9354-7d1e2d4a6925 7d4bcca24c8d948e2b1dd21da858e7cc { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03921.RNA-Seq.chimeric.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 27799e8d-10dc-43dc-916e-d7baef36167a.rna_seq.chimeric.gdc_realn.bam 35423904 BAM chimeric harmonized CPTAC3 1ff55b2f-23f7-44b6-a1c6-ec92549e44ee 6044223f1c28395fec2408eb3300e866 { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-03921.RNA-Seq.genomic.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 994a0fa9-fe92-446e-b26c-0096498e75e1.rna_seq.genomic.gdc_realn.bam 13407903930 BAM genomic harmonized CPTAC3 3d77009d-409b-45f0-8d5f-5cdcbe7a4c0f 986495fd3f6f1ee01f65f704f7e3f259 { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03921.RNA-Seq.genomic.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 27799e8d-10dc-43dc-916e-d7baef36167a.rna_seq.genomic.gdc_realn.bam 12501241921 BAM genomic harmonized CPTAC3 e3dee240-24d4-4a74-b23b-7d36f86cbfae e007aff8f38403ed74b1284288fcbf4e { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor' } +C3N-03921.RNA-Seq.R1_L006.A C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 190607_UNC32-K00270_0179_BH75W2BBXY_TTATAACC-GATATCGA_S22_L006_R1_001.fastq.gz 4759625511 FASTQ R1_L006 unaligned CPTAC3 367ab8a5-931b-41d4-9144-ae59e09b9c0a 972900174e5c4c17356a868e26d81596 { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-03921.RNA-Seq.R1_L008.T C3N-03921 LUAD RNA-Seq tumor CPT0223260009 190607_UNC32-K00270_0178_AH773TBBXY_ACACTAAG-ATCCATAT_S31_L008_R1_001.fastq.gz 4740602776 FASTQ R1_L008 unaligned CPTAC3 7881cf5e-17a2-412c-ad03-c1738c003666 ee69d2111bd851c723ef43a41e624fae { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03921.RNA-Seq.R2_L006.A C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 190607_UNC32-K00270_0179_BH75W2BBXY_TTATAACC-GATATCGA_S22_L006_R2_001.fastq.gz 4906699320 FASTQ R2_L006 unaligned CPTAC3 77fac69d-a38b-4b26-8928-d9385eae7070 e90dab656fbac7b34a002ec76fd70a9e { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-03921.RNA-Seq.R2_L008.T C3N-03921 LUAD RNA-Seq tumor CPT0223260009 190607_UNC32-K00270_0178_AH773TBBXY_ACACTAAG-ATCCATAT_S31_L008_R2_001.fastq.gz 5200451436 FASTQ R2_L008 unaligned CPTAC3 1b90d3b5-254f-4f2e-83b2-aa2d5cd5d654 1ce0915f56da3450cd8cbb0c948a900a { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03921.RNA-Seq.transcriptome.A.hg38 C3N-03921 LUAD RNA-Seq tissue_normal CPT0223280009 994a0fa9-fe92-446e-b26c-0096498e75e1.rna_seq.transcriptome.gdc_realn.bam 9788432401 BAM transcriptome harmonized CPTAC3 c2878bde-0da1-4458-871e-3978886c8715 aec05eae1bc6c3803c8e2e649c7226a4 { 'aliquot_tag': 'ALQ_419838c5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03921.RNA-Seq.transcriptome.T.hg38 C3N-03921 LUAD RNA-Seq tumor CPT0223260009 27799e8d-10dc-43dc-916e-d7baef36167a.rna_seq.transcriptome.gdc_realn.bam 10869984062 BAM transcriptome harmonized CPTAC3 f39d42fe-9006-49ad-b54b-c560c918b8ca 91b050c8ff48e34eaa1465353cb6a5d3 { 'aliquot_tag': 'ALQ_fea886a4', 'gdc_sample_type': 'Primary Tumor' } C3N-03921.WGS.N C3N-03921 LUAD WGS blood_normal CPT0223370002 CPT0223370002.WholeGenome.RP-1303.bam 57889869359 BAM aligned CPTAC3 c5069d8b-dc94-4176-b2ec-78c98c0f9efa 7e9bb5ad60f1c6d8dad633a9b3c98d93 { 'aliquot_tag': 'ALQ_9f46a539', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03921.WGS.N.hg38 C3N-03921 LUAD WGS blood_normal CPT0223370002 999fc728-4e24-4737-9daf-55eb19ded472_wgs_gdc_realn.bam 82731236019 BAM harmonized CPTAC3 e35a5b94-ed10-489e-81eb-fe73e8229013 5169e9b5d0e09d42f297a30da19be599 { 'aliquot_tag': 'ALQ_9f46a539', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03921.WGS.T C3N-03921 LUAD WGS tumor CPT0223260006 CPT0223260006.WholeGenome.RP-1303.bam 70561800278 BAM aligned CPTAC3 420b4a4a-4d81-406b-8eea-b5276fd7a58c 66bcac0fb03387fcfbb510b3d708d2db { 'aliquot_tag': 'ALQ_6e179b35', 'gdc_sample_type': 'Primary Tumor' } @@ -36865,16 +39231,16 @@ C3N-03923.miRNA-Seq.A C3N-03923 LSCC miRNA-Seq tissue_normal CPT0256410009 20051 C3N-03923.miRNA-Seq.A.hg38 C3N-03923 LSCC miRNA-Seq tissue_normal CPT0256410009 e3adc27c-befd-4dd9-bcdd-ab2f292f450b_mirnaseq_gdc_realn.bam 289685102 BAM harmonized CPTAC3 adbb2fb7-5245-4239-ad48-470a581284e0 d581b416706bd97cd0b6054a9ef8bbd8 { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03923.miRNA-Seq.T C3N-03923 LSCC miRNA-Seq tumor CPT0256400013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTGAAA_S19_L007_R1_001.unaln.bam 229732290 BAM unaligned CPTAC3 5cf50621-f395-4671-aafe-515f039a7b4f e83c931c872e86048e8c487f11c06fef { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor' } C3N-03923.miRNA-Seq.T.hg38 C3N-03923 LSCC miRNA-Seq tumor CPT0256400013 6e4d0579-0295-48b1-af3c-b7b5279a15af_mirnaseq_gdc_realn.bam 257360022 BAM harmonized CPTAC3 a4545431-007f-4335-a7bb-ea1fde57573f 0b4e31eab37ab0d08393306c030e2ed4 { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03923.RNA-Seq.chimeric.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 0317ac96-d284-4f52-a8cc-b4c23d76d9ee.rna_seq.chimeric.gdc_realn.bam 81585531 BAM chimeric harmonized CPTAC3 46f8984e-f838-4d21-ad7a-9b825fd73544 9fcf1310366718e422452ab715c57589 { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03923.RNA-Seq.chimeric.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 dac1b131-9f86-4c3e-bf2d-65db48994b83.rna_seq.chimeric.gdc_realn.bam 111147592 BAM chimeric harmonized CPTAC3 57e77954-0efa-4f1f-a293-f2d327e5109a adbf1744f971456f12aa5e6bb7b3d173 { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03923.RNA-Seq.genomic.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 0317ac96-d284-4f52-a8cc-b4c23d76d9ee.rna_seq.genomic.gdc_realn.bam 6716370137 BAM genomic harmonized CPTAC3 178dd965-2a98-4040-8369-7d1a4c80b7b5 c80cd08bf352cc20e17a3d2990cc9467 { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03923.RNA-Seq.genomic.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 dac1b131-9f86-4c3e-bf2d-65db48994b83.rna_seq.genomic.gdc_realn.bam 8647007053 BAM genomic harmonized CPTAC3 e1ee19cf-889b-46be-affe-6486a39bedcc afccdc556d150c7dd419bac6d7715695 { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03923.RNA-Seq.R1_L003.A C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 200505_UNC31-K00269_0277_AHGFKNBBXY_GATCTATC-ATGAGGCT_S11_L003_R1_001.fastq.gz 3205216925 FASTQ R1_L003 unaligned CPTAC3 57455e4c-b3e0-42e8-b777-7b62a4e7ee1c 7dc25e8c92dd7a54632ac0b94140a9d4 { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03923.RNA-Seq.R1_L005.T C3N-03923 LSCC RNA-Seq tumor CPT0256400013 200505_UNC31-K00269_0277_AHGFKNBBXY_TTCCTGTT-AGTATCTT_S20_L005_R1_001.fastq.gz 4258161393 FASTQ R1_L005 unaligned CPTAC3 1472ec3e-ccbe-4215-96fe-fed9126c9492 f84f508a8faae228e311adc5d94643bc { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03923.RNA-Seq.R2_L003.A C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 200505_UNC31-K00269_0277_AHGFKNBBXY_GATCTATC-ATGAGGCT_S11_L003_R2_001.fastq.gz 3557318303 FASTQ R2_L003 unaligned CPTAC3 cbbe8629-44f7-4ad4-9386-0070b1995efe c103a56b60614a8574aac694649a040c { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03923.RNA-Seq.R2_L005.T C3N-03923 LSCC RNA-Seq tumor CPT0256400013 200505_UNC31-K00269_0277_AHGFKNBBXY_TTCCTGTT-AGTATCTT_S20_L005_R2_001.fastq.gz 4751061138 FASTQ R2_L005 unaligned CPTAC3 b0051816-8cfc-4fc9-bff8-e02a112a6740 bf076ecb443ecf800cb547b430234ec8 { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor' } -C3N-03923.RNA-Seq.transcriptome.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 0317ac96-d284-4f52-a8cc-b4c23d76d9ee.rna_seq.transcriptome.gdc_realn.bam 7321825207 BAM transcriptome harmonized CPTAC3 b103447e-b9b2-430d-bec8-10228cf4261d 9cb3a1de40221082dd0734021d0268ce { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03923.RNA-Seq.transcriptome.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 dac1b131-9f86-4c3e-bf2d-65db48994b83.rna_seq.transcriptome.gdc_realn.bam 8961961733 BAM transcriptome harmonized CPTAC3 6f17603d-9140-4dcd-b776-e38d93ce46b9 16d2eae5f671cf53b856cc10a5bcc9d9 { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor' } +C3N-03923.RNA-Seq.chimeric.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 e2b8d801-420e-43af-b291-37f4193186a3.rna_seq.chimeric.gdc_realn.bam 81573846 BAM chimeric harmonized CPTAC3 238af855-75f5-4e54-a402-78e089387245 215b926eb820f448c5492907f5b40272 { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03923.RNA-Seq.chimeric.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 165ea35c-f4fd-40e5-89cd-91dfc0d1e948.rna_seq.chimeric.gdc_realn.bam 111146283 BAM chimeric harmonized CPTAC3 c08c09d4-236d-4c7c-a381-5b3b9f2de70b ea042a13261497be523c60fc04b00448 { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor' } +C3N-03923.RNA-Seq.genomic.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 e2b8d801-420e-43af-b291-37f4193186a3.rna_seq.genomic.gdc_realn.bam 6717430392 BAM genomic harmonized CPTAC3 d98f530d-a7de-40b5-9dda-a279b75c0ef0 2dc8cbdb718bccdc608d99e80e7fe241 { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03923.RNA-Seq.genomic.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 165ea35c-f4fd-40e5-89cd-91dfc0d1e948.rna_seq.genomic.gdc_realn.bam 8648889274 BAM genomic harmonized CPTAC3 090c845c-1364-4801-96a8-d4c2a4e5e2bf 69d18f76fb171f5bbb516e078353b1a8 { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor' } +C3N-03923.RNA-Seq.R1_L003.A C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 200505_UNC31-K00269_0277_AHGFKNBBXY_GATCTATC-ATGAGGCT_S11_L003_R1_001.fastq.gz 3205216925 FASTQ R1_L003 unaligned CPTAC3 57455e4c-b3e0-42e8-b777-7b62a4e7ee1c 7dc25e8c92dd7a54632ac0b94140a9d4 { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-03923.RNA-Seq.R1_L005.T C3N-03923 LSCC RNA-Seq tumor CPT0256400013 200505_UNC31-K00269_0277_AHGFKNBBXY_TTCCTGTT-AGTATCTT_S20_L005_R1_001.fastq.gz 4258161393 FASTQ R1_L005 unaligned CPTAC3 1472ec3e-ccbe-4215-96fe-fed9126c9492 f84f508a8faae228e311adc5d94643bc { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-03923.RNA-Seq.R2_L003.A C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 200505_UNC31-K00269_0277_AHGFKNBBXY_GATCTATC-ATGAGGCT_S11_L003_R2_001.fastq.gz 3557318303 FASTQ R2_L003 unaligned CPTAC3 cbbe8629-44f7-4ad4-9386-0070b1995efe c103a56b60614a8574aac694649a040c { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-03923.RNA-Seq.R2_L005.T C3N-03923 LSCC RNA-Seq tumor CPT0256400013 200505_UNC31-K00269_0277_AHGFKNBBXY_TTCCTGTT-AGTATCTT_S20_L005_R2_001.fastq.gz 4751061138 FASTQ R2_L005 unaligned CPTAC3 b0051816-8cfc-4fc9-bff8-e02a112a6740 bf076ecb443ecf800cb547b430234ec8 { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-03923.RNA-Seq.transcriptome.A.hg38 C3N-03923 LSCC RNA-Seq tissue_normal CPT0256410009 e2b8d801-420e-43af-b291-37f4193186a3.rna_seq.transcriptome.gdc_realn.bam 8327787486 BAM transcriptome harmonized CPTAC3 2d88c119-6a4a-4887-8117-886f1cd8e29e 9ee17e87f10a9ddadcb1a3d864b7c59e { 'aliquot_tag': 'ALQ_c22c9f17', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03923.RNA-Seq.transcriptome.T.hg38 C3N-03923 LSCC RNA-Seq tumor CPT0256400013 165ea35c-f4fd-40e5-89cd-91dfc0d1e948.rna_seq.transcriptome.gdc_realn.bam 10204617976 BAM transcriptome harmonized CPTAC3 464a1c8e-b3c2-40ed-8c8d-10311c2b7271 15497f7b34dff25c1a3dbf6b849570f4 { 'aliquot_tag': 'ALQ_6826ef8', 'gdc_sample_type': 'Primary Tumor' } C3N-03923.WGS.N C3N-03923 LSCC WGS blood_normal CPT0256500002 CPT0256500002.WholeGenome.RP-2158.bam 22952793307 BAM aligned CPTAC3 c1e957ff-ee81-4d7f-bc37-674de50806bc 9132c33222f896c8f20e05a1639de98e { 'aliquot_tag': 'ALQ_a3c2bc8a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03923.WGS.N.hg38 C3N-03923 LSCC WGS blood_normal CPT0256500002 5b4a4a97-1ca6-43c7-ae59-d4de15fcbd74_wgs_gdc_realn.bam 68819258297 BAM harmonized CPTAC3 d0933bbc-e62a-41b2-bd12-be1d63e53836 33d4e4f4bdfbcbfc62cd696e0ca787f8 { 'aliquot_tag': 'ALQ_a3c2bc8a', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03923.WGS.T C3N-03923 LSCC WGS tumor CPT0256400006 CPT0256400006.WholeGenome.RP-2158.bam 22798062723 BAM aligned CPTAC3 94131131-3a7c-437c-ac22-997e893751c2 08f681135fd003c5134499bb6b6b50ab { 'aliquot_tag': 'ALQ_6ff3ab36', 'gdc_sample_type': 'Primary Tumor' } @@ -36895,16 +39261,19 @@ C3N-03928.miRNA-Seq.T C3N-03928 HNSCC miRNA-Seq tumor CPT0223450009 190228_UNC32 C3N-03928.miRNA-Seq.T.hg38 C3N-03928 HNSCC miRNA-Seq tumor CPT0223450009 e740f8e4-61be-4c70-82b6-5bd6255dbb68_mirnaseq_gdc_realn.bam 231339187 BAM harmonized CPTAC3 081fd7ec-e69d-4f37-9daa-e83d00b6b672 5fc5420c801011ffa9ce31683733471f { 'aliquot_tag': 'ALQ_6f511f69', 'gdc_sample_type': 'Primary Tumor' } C3N-03928.RNA-Seq.chimeric.A.hg38 C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 70c8169f-5a36-4241-8d16-e5945f4fd4db.rna_seq.chimeric.gdc_realn.bam 43989295 BAM chimeric harmonized CPTAC3 e3171348-b14c-45a2-8523-d6ca26b7b916 233004d359356919f1b9178d1292cdd2 { 'aliquot_tag': 'ALQ_28f165b9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03928.RNA-Seq.chimeric.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 ec4209ea-d27e-4cd1-8f92-61908f981576.rna_seq.chimeric.gdc_realn.bam 213902410 BAM chimeric harmonized CPTAC3 76ae54cd-86e2-4937-aad3-f90e0f0ae25b a22b54d8007713ff2d3bbb2548b8c2ba { 'aliquot_tag': 'ALQ_6f511f69', 'gdc_sample_type': 'Primary Tumor' } +C3N-03928.RNA-Seq.chimeric.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 8317ba9e-f39a-4783-a541-d318d513b18d.rna_seq.chimeric.gdc_realn.bam 6854951 BAM chimeric harmonized CPTAC3 ff1405a8-916a-436d-a6aa-d73e1018359b 35de8a786424ec2e745f9c4654828b73 { 'aliquot_tag': 'ALQ_bd614b1b', 'gdc_sample_type': 'Primary Tumor' } C3N-03928.RNA-Seq.genomic.A.hg38 C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 70c8169f-5a36-4241-8d16-e5945f4fd4db.rna_seq.genomic.gdc_realn.bam 8542541691 BAM genomic harmonized CPTAC3 0d8ed636-a303-4fcc-9bba-eec95d558e16 c417f464de43e0416f603c1bb22c03fd { 'aliquot_tag': 'ALQ_28f165b9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03928.RNA-Seq.genomic.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 ec4209ea-d27e-4cd1-8f92-61908f981576.rna_seq.genomic.gdc_realn.bam 8153597747 BAM genomic harmonized CPTAC3 72f76193-2b91-46ed-997e-a9c47d5e4ede 740d1976e038d29d5abcda4948d36451 { 'aliquot_tag': 'ALQ_6f511f69', 'gdc_sample_type': 'Primary Tumor' } -C3N-03928.RNA-Seq.R1_L004.T C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 190328_UNC31-K00269_0204_BH5F5NBBXY_TGACCA_S16_L004_R1_001.fastq.gz 3837025506 FASTQ R1_L004 unaligned CPTAC3 0176e888-4ebb-4a42-b6a4-67c44c5fb1c8 d17bc447e8808d00dbd3b1e8cb8eb47f { 'aliquot_tag': 'ALQ_6f511f69', 'gdc_sample_type': 'Primary Tumor' } -C3N-03928.RNA-Seq.R1_L005.A C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 190411_UNC31-K00269_0208_BH3W3KBBXY_CTCTCGTC-TATAACCT_S24_L005_R1_001.fastq.gz 4139135637 FASTQ R1_L005 unaligned CPTAC3 47a58947-9f20-4cb8-9b63-3592510547d2 586b748c1ee8d907d4d84c0f067a1507 { 'aliquot_tag': 'ALQ_28f165b9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03928.RNA-Seq.R1_.T C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 20210723_P2_B4_WB7988-plate2_S16_R1_001.fastq.gz 2525598438 FASTQ R1_ unaligned CPTAC3 a05c6296-f275-4d3e-a4d8-80fdfaf285a4 81fe16bda6e7668c2a0ef7e032e17527 { 'aliquot_tag': 'ALQ_bd614b1b', 'gdc_sample_type': 'Primary Tumor' } -C3N-03928.RNA-Seq.R2_L004.T C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 190328_UNC31-K00269_0204_BH5F5NBBXY_TGACCA_S16_L004_R2_001.fastq.gz 4113640477 FASTQ R2_L004 unaligned CPTAC3 1a65fad3-3abe-471c-814d-e5857ef2953f db3233c6e3c50e8c77fba7ee3850c960 { 'aliquot_tag': 'ALQ_6f511f69', 'gdc_sample_type': 'Primary Tumor' } -C3N-03928.RNA-Seq.R2_L005.A C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 190411_UNC31-K00269_0208_BH3W3KBBXY_CTCTCGTC-TATAACCT_S24_L005_R2_001.fastq.gz 4660118469 FASTQ R2_L005 unaligned CPTAC3 a09dca26-cf2b-4011-9547-39040fa13483 1860e4760d7c3b36c49db75d9a21b553 { 'aliquot_tag': 'ALQ_28f165b9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03928.RNA-Seq.R2_.T C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 20210723_P2_B4_WB7988-plate2_S16_R2_001.fastq.gz 2612357568 FASTQ R2_ unaligned CPTAC3 0a5db27b-544d-478c-9328-80f8a8d6bffc c10bdcd90ddf9cc7354c01cf2e742c8b { 'aliquot_tag': 'ALQ_bd614b1b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03928.RNA-Seq.genomic.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 ec4209ea-d27e-4cd1-8f92-61908f981576.rna_seq.genomic.gdc_realn.bam 8153597747 BAM genomic harmonized CPTAC3 6529a0cd-9bef-48a2-b94b-a19a5c878119 740d1976e038d29d5abcda4948d36451 { 'aliquot_tag': 'ALQ_6f511f69', 'gdc_sample_type': 'Primary Tumor' } +C3N-03928.RNA-Seq.genomic.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 8317ba9e-f39a-4783-a541-d318d513b18d.rna_seq.genomic.gdc_realn.bam 5238124945 BAM genomic harmonized CPTAC3 93748b45-89d1-4f0c-8250-24d3367a0389 53d8031938205388f913acd18c047394 { 'aliquot_tag': 'ALQ_bd614b1b', 'gdc_sample_type': 'Primary Tumor' } +C3N-03928.RNA-Seq.R1_L004.T C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 190328_UNC31-K00269_0204_BH5F5NBBXY_TGACCA_S16_L004_R1_001.fastq.gz 3837025506 FASTQ R1_L004 unaligned CPTAC3 0176e888-4ebb-4a42-b6a4-67c44c5fb1c8 d17bc447e8808d00dbd3b1e8cb8eb47f { 'aliquot_tag': 'ALQ_6f511f69', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03928.RNA-Seq.R1_L005.A C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 190411_UNC31-K00269_0208_BH3W3KBBXY_CTCTCGTC-TATAACCT_S24_L005_R1_001.fastq.gz 4139135637 FASTQ R1_L005 unaligned CPTAC3 47a58947-9f20-4cb8-9b63-3592510547d2 586b748c1ee8d907d4d84c0f067a1507 { 'aliquot_tag': 'ALQ_28f165b9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03928.RNA-Seq.R2_L004.T C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 190328_UNC31-K00269_0204_BH5F5NBBXY_TGACCA_S16_L004_R2_001.fastq.gz 4113640477 FASTQ R2_L004 unaligned CPTAC3 1a65fad3-3abe-471c-814d-e5857ef2953f db3233c6e3c50e8c77fba7ee3850c960 { 'aliquot_tag': 'ALQ_6f511f69', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03928.RNA-Seq.R2_L005.A C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 190411_UNC31-K00269_0208_BH3W3KBBXY_CTCTCGTC-TATAACCT_S24_L005_R2_001.fastq.gz 4660118469 FASTQ R2_L005 unaligned CPTAC3 a09dca26-cf2b-4011-9547-39040fa13483 1860e4760d7c3b36c49db75d9a21b553 { 'aliquot_tag': 'ALQ_28f165b9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03928.RNA-Seq.T C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 20210723_P2_B4_WB7988-plate2_S16_R1_001.fastq.gz 2525598438 FASTQ unaligned CPTAC3 a05c6296-f275-4d3e-a4d8-80fdfaf285a4 81fe16bda6e7668c2a0ef7e032e17527 +C3N-03928.RNA-Seq.T C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 20210723_P2_B4_WB7988-plate2_S16_R2_001.fastq.gz 2612357568 FASTQ unaligned CPTAC3 0a5db27b-544d-478c-9328-80f8a8d6bffc c10bdcd90ddf9cc7354c01cf2e742c8b C3N-03928.RNA-Seq.transcriptome.A.hg38 C3N-03928 HNSCC RNA-Seq tissue_normal CPT0223460009 70c8169f-5a36-4241-8d16-e5945f4fd4db.rna_seq.transcriptome.gdc_realn.bam 12563867397 BAM transcriptome harmonized CPTAC3 323a0cdb-027b-40fc-b7ae-0bddd2ec541b 5fc97b397edda29959afb278e0ef1d5c { 'aliquot_tag': 'ALQ_28f165b9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03928.RNA-Seq.transcriptome.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223450009 ec4209ea-d27e-4cd1-8f92-61908f981576.rna_seq.transcriptome.gdc_realn.bam 11147226211 BAM transcriptome harmonized CPTAC3 520aa9ac-ee05-426e-b4f6-f85470552268 7ce63b085117437dc78181ebc76c5cdf { 'aliquot_tag': 'ALQ_6f511f69', 'gdc_sample_type': 'Primary Tumor' } +C3N-03928.RNA-Seq.transcriptome.T.hg38 C3N-03928 HNSCC RNA-Seq tumor CPT0223490011 8317ba9e-f39a-4783-a541-d318d513b18d.rna_seq.transcriptome.gdc_realn.bam 4135179406 BAM transcriptome harmonized CPTAC3 142f4c1a-dc84-47e1-b934-bb4e566ccadb 2d4ca23abdca0b1452d323fdb2a5caaf { 'aliquot_tag': 'ALQ_bd614b1b', 'gdc_sample_type': 'Primary Tumor' } C3N-03928.WGS.N C3N-03928 HNSCC WGS blood_normal CPT0223550002 CPT0223550002.WholeGenome.RP-1303.bam 63920687389 BAM aligned CPTAC3 e53b0336-cc04-4e09-9e65-20f6f7920980 bbe2d3c4421a108074f35c7d0eb9bdbc { 'aliquot_tag': 'ALQ_33df1544', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03928.WGS.N.hg38 C3N-03928 HNSCC WGS blood_normal CPT0223550002 d52c7050-d9d6-4c27-941d-49f3c0986bc7_wgs_gdc_realn.bam 91894127964 BAM harmonized CPTAC3 3b342f53-0196-4733-b37b-74d26d87db26 2e88298d309f7989a45c535d87fa9dc2 { 'aliquot_tag': 'ALQ_33df1544', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03928.WGS.T C3N-03928 HNSCC WGS tumor CPT0223450006 CPT0223450006.WholeGenome.RP-1303.bam 83995772319 BAM aligned CPTAC3 1956ec9f-f220-4486-b2f5-847f977d3b2e b407f1bf64cc6acb13b953b39f5648d3 { 'aliquot_tag': 'ALQ_ffee02f8', 'gdc_sample_type': 'Primary Tumor' } @@ -36923,16 +39292,16 @@ C3N-03929.miRNA-Seq.A C3N-03929 LUAD miRNA-Seq tissue_normal CPT0219930009 19072 C3N-03929.miRNA-Seq.A.hg38 C3N-03929 LUAD miRNA-Seq tissue_normal CPT0219930009 d7b9db56-9d50-4f58-bc1d-af1631e7e3c5_mirnaseq_gdc_realn.bam 199214581 BAM harmonized CPTAC3 dc47d7fa-e22a-452d-b738-93583699ea2f 24035945e92996fe0d59a43558d14ce8 { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03929.miRNA-Seq.T C3N-03929 LUAD miRNA-Seq tumor CPT0219780009 190722_UNC31-K00269_0234_AH7VGTBBXY_AGTTCC_S10_L007_R1_001.unaln.bam 208737992 BAM unaligned CPTAC3 438ae58a-ea72-473c-916e-60882368e16b 664547cb230415431b9c32c1e57fb5c1 { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor' } C3N-03929.miRNA-Seq.T.hg38 C3N-03929 LUAD miRNA-Seq tumor CPT0219780009 6382bc10-de64-4d2b-aa81-7c16183a8d3f_mirnaseq_gdc_realn.bam 229689056 BAM harmonized CPTAC3 3ae761bb-1948-4697-8d4a-56f6ea6668ec 7c65097f591964dee5005924e49a33b3 { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor' } -C3N-03929.RNA-Seq.chimeric.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 624af312-4b63-4c3e-89e0-83c6d646c927.rna_seq.chimeric.gdc_realn.bam 32810017 BAM chimeric harmonized CPTAC3 80f60d5f-6b3c-4464-b91f-ffd67d8ddcd9 370e2d8191276837f5a98ef84894ddd8 { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03929.RNA-Seq.chimeric.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 cec5e7b6-2a9d-4478-a410-60cfd3e89578.rna_seq.chimeric.gdc_realn.bam 33054499 BAM chimeric harmonized CPTAC3 a5cfa44b-8aa9-4caa-88d0-3a629480cb03 da19d2e6797b23a4a493c9e856ec1ddd { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor' } -C3N-03929.RNA-Seq.genomic.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 624af312-4b63-4c3e-89e0-83c6d646c927.rna_seq.genomic.gdc_realn.bam 9908184777 BAM genomic harmonized CPTAC3 300a8f9f-a240-4395-9704-17318c610a72 b2d1e3d490407095be2ea0dc3735a2df { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03929.RNA-Seq.genomic.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 cec5e7b6-2a9d-4478-a410-60cfd3e89578.rna_seq.genomic.gdc_realn.bam 11831399252 BAM genomic harmonized CPTAC3 bd1d325e-b08a-49d2-9a3d-c30b7aa6e61a 7beb945c387bbf3cfc4506d81e139e5c { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor' } -C3N-03929.RNA-Seq.R1_L001.A C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 190702_UNC32-K00270_0187_AH7FK2BBXY_CTGCTTCC-GATAGATC_S4_L001_R1_001.fastq.gz 3944633762 FASTQ R1_L001 unaligned CPTAC3 797bc491-d17f-42f7-b207-69f734412c7a ae52ca5a6f48818298e761336cd5ff32 { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03929.RNA-Seq.R1_L001.T C3N-03929 LUAD RNA-Seq tumor CPT0219780009 190612_UNC31-K00269_0223_BH77CWBBXY_TAAGGTCA-TGTCGTAG_S4_L001_R1_001.fastq.gz 4400507914 FASTQ R1_L001 unaligned CPTAC3 b378549b-9541-4f47-915b-1ea031f34aff 19047ab113c169916705098ffbef3891 { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor' } -C3N-03929.RNA-Seq.R2_L001.A C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 190702_UNC32-K00270_0187_AH7FK2BBXY_CTGCTTCC-GATAGATC_S4_L001_R2_001.fastq.gz 4469374292 FASTQ R2_L001 unaligned CPTAC3 dba50817-cfc3-4aa9-8fb4-0fa6c0cba16f 2f76ccb006f0cbe8dc8347c889e41041 { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03929.RNA-Seq.R2_L001.T C3N-03929 LUAD RNA-Seq tumor CPT0219780009 190612_UNC31-K00269_0223_BH77CWBBXY_TAAGGTCA-TGTCGTAG_S4_L001_R2_001.fastq.gz 5003271371 FASTQ R2_L001 unaligned CPTAC3 b2b0d389-b8e7-4131-b5c7-2c812b0a75c1 087b95654bf2f8f53a65c0d7120885f5 { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor' } -C3N-03929.RNA-Seq.transcriptome.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 624af312-4b63-4c3e-89e0-83c6d646c927.rna_seq.transcriptome.gdc_realn.bam 7250621002 BAM transcriptome harmonized CPTAC3 6ca96f66-8ebb-434b-9189-2ef142f8b6f5 bc8a2e5b7937cad3cec0b1e8967eaffa { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03929.RNA-Seq.transcriptome.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 cec5e7b6-2a9d-4478-a410-60cfd3e89578.rna_seq.transcriptome.gdc_realn.bam 9314914068 BAM transcriptome harmonized CPTAC3 e822b3df-e15c-4322-9d04-2eb6d22aa06b 2def91a2a7bacbafb3217768f1e09fab { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor' } +C3N-03929.RNA-Seq.chimeric.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 8089ca36-60a9-4ff6-8b0c-8a897c9099d2.rna_seq.chimeric.gdc_realn.bam 32802395 BAM chimeric harmonized CPTAC3 bba6577c-15aa-4e26-9f27-2f2bbeb637c7 c1d075b43d5b9f1d7615c56271209b2e { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03929.RNA-Seq.chimeric.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 20e0c605-b30b-427d-9fd1-e3181cf266d9.rna_seq.chimeric.gdc_realn.bam 33051238 BAM chimeric harmonized CPTAC3 d9de789c-8986-4d4e-af00-b047c37b321d 54d634de485f8508d699923b1ccb97fe { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor' } +C3N-03929.RNA-Seq.genomic.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 8089ca36-60a9-4ff6-8b0c-8a897c9099d2.rna_seq.genomic.gdc_realn.bam 9909479026 BAM genomic harmonized CPTAC3 f87f47da-9b0f-4d11-a0dc-cad9bce7f6c1 adbcd7e82636befe76050f19a94c63d3 { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03929.RNA-Seq.genomic.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 20e0c605-b30b-427d-9fd1-e3181cf266d9.rna_seq.genomic.gdc_realn.bam 11832520823 BAM genomic harmonized CPTAC3 8bf2d0ce-0958-4e71-a9d2-67b7aa102ebb 449be1115390b47dc3443f470fe18c66 { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor' } +C3N-03929.RNA-Seq.R1_L001.A C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 190702_UNC32-K00270_0187_AH7FK2BBXY_CTGCTTCC-GATAGATC_S4_L001_R1_001.fastq.gz 3944633762 FASTQ R1_L001 unaligned CPTAC3 797bc491-d17f-42f7-b207-69f734412c7a ae52ca5a6f48818298e761336cd5ff32 { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-03929.RNA-Seq.R1_L001.T C3N-03929 LUAD RNA-Seq tumor CPT0219780009 190612_UNC31-K00269_0223_BH77CWBBXY_TAAGGTCA-TGTCGTAG_S4_L001_R1_001.fastq.gz 4400507914 FASTQ R1_L001 unaligned CPTAC3 b378549b-9541-4f47-915b-1ea031f34aff 19047ab113c169916705098ffbef3891 { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-03929.RNA-Seq.R2_L001.A C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 190702_UNC32-K00270_0187_AH7FK2BBXY_CTGCTTCC-GATAGATC_S4_L001_R2_001.fastq.gz 4469374292 FASTQ R2_L001 unaligned CPTAC3 dba50817-cfc3-4aa9-8fb4-0fa6c0cba16f 2f76ccb006f0cbe8dc8347c889e41041 { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-03929.RNA-Seq.R2_L001.T C3N-03929 LUAD RNA-Seq tumor CPT0219780009 190612_UNC31-K00269_0223_BH77CWBBXY_TAAGGTCA-TGTCGTAG_S4_L001_R2_001.fastq.gz 5003271371 FASTQ R2_L001 unaligned CPTAC3 b2b0d389-b8e7-4131-b5c7-2c812b0a75c1 087b95654bf2f8f53a65c0d7120885f5 { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-03929.RNA-Seq.transcriptome.A.hg38 C3N-03929 LUAD RNA-Seq tissue_normal CPT0219930009 8089ca36-60a9-4ff6-8b0c-8a897c9099d2.rna_seq.transcriptome.gdc_realn.bam 8205895863 BAM transcriptome harmonized CPTAC3 cf3d406c-d166-4d53-8cd5-455bc2358eec cb76a6578bb01eb6c2a11e6e1a84439c { 'aliquot_tag': 'ALQ_7670a1ba', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03929.RNA-Seq.transcriptome.T.hg38 C3N-03929 LUAD RNA-Seq tumor CPT0219780009 20e0c605-b30b-427d-9fd1-e3181cf266d9.rna_seq.transcriptome.gdc_realn.bam 10548857985 BAM transcriptome harmonized CPTAC3 0239e5b8-a659-40d9-aaf9-e0a0ccee09b3 20521a8880326873f88a38a4c3f966c9 { 'aliquot_tag': 'ALQ_3baaf1db', 'gdc_sample_type': 'Primary Tumor' } C3N-03929.WGS.N C3N-03929 LUAD WGS blood_normal CPT0220060002 CPT0220060002.WholeGenome.RP-1303.bam 66045742511 BAM aligned CPTAC3 dea67ad2-b27c-42a6-8219-70782be114ff d447b783ebc363564987e164d8bfafa3 { 'aliquot_tag': 'ALQ_155ae4ba', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03929.WGS.N.hg38 C3N-03929 LUAD WGS blood_normal CPT0220060002 6844c215-74c9-4279-92a7-7bd760aedaf2_wgs_gdc_realn.bam 96353498289 BAM harmonized CPTAC3 ddfdbe51-fc93-411d-be38-da554a7cef3d dcd7c1fed2f1f3460d3566ed03288747 { 'aliquot_tag': 'ALQ_155ae4ba', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03929.WGS.T C3N-03929 LUAD WGS tumor CPT0219780006 CPT0219780006.WholeGenome.RP-1303.bam 72014353249 BAM aligned CPTAC3 04b6c73c-4bc1-4f06-8921-88d0564dda86 235b0364c3d9f544acb4ec026d9c9915 { 'aliquot_tag': 'ALQ_ab15ec4a', 'gdc_sample_type': 'Primary Tumor' } @@ -36953,16 +39322,19 @@ C3N-03933.miRNA-Seq.T C3N-03933 HNSCC miRNA-Seq tumor CPT0220610009 190228_UNC32 C3N-03933.miRNA-Seq.T.hg38 C3N-03933 HNSCC miRNA-Seq tumor CPT0220610009 fd105c6e-39db-4a51-a70b-d65f5a985fa0_mirnaseq_gdc_realn.bam 256413294 BAM harmonized CPTAC3 e1111762-d20c-4ffe-b021-daad6f5cadcc 0b1a316b5565533e1c0913ff7593aed2 { 'aliquot_tag': 'ALQ_e6f1023f', 'gdc_sample_type': 'Primary Tumor' } C3N-03933.RNA-Seq.chimeric.A.hg38 C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 57443e9a-1907-4269-81bc-0a768fc2d0ec.rna_seq.chimeric.gdc_realn.bam 27432231 BAM chimeric harmonized CPTAC3 c35c6df9-5e3b-43a2-9e92-b870be815b00 05c6dd143bf387f68a8c0fe88f5aa7ef { 'aliquot_tag': 'ALQ_a15178ef', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03933.RNA-Seq.chimeric.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 941fab72-d48d-46d4-8aeb-f395141c31c6.rna_seq.chimeric.gdc_realn.bam 508022546 BAM chimeric harmonized CPTAC3 d9301909-9d6f-42f2-915e-a3d42bcf047d b9b48cd191762f60a27af294525fe32c { 'aliquot_tag': 'ALQ_e6f1023f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03933.RNA-Seq.genomic.A.hg38 C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 57443e9a-1907-4269-81bc-0a768fc2d0ec.rna_seq.genomic.gdc_realn.bam 8396260787 BAM genomic harmonized CPTAC3 f4455ace-070e-418c-8e20-c80cf1290028 e554fe747c3d3b987cf748494f3c94c8 { 'aliquot_tag': 'ALQ_a15178ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03933.RNA-Seq.genomic.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 941fab72-d48d-46d4-8aeb-f395141c31c6.rna_seq.genomic.gdc_realn.bam 8429589321 BAM genomic harmonized CPTAC3 15df584c-4090-48c6-91e1-b14acf556cf2 1afb36d654a570e28332155bd85fbe5d { 'aliquot_tag': 'ALQ_e6f1023f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03933.RNA-Seq.R1_L004.T C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATCACG_S15_L004_R1_001.fastq.gz 4100140757 FASTQ R1_L004 unaligned CPTAC3 1551efe9-d971-49e8-b106-97529a3bc83f f838fbf6959f2ee0620a81f1a0d9ccaa { 'aliquot_tag': 'ALQ_e6f1023f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03933.RNA-Seq.R1_L005.A C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 190411_UNC31-K00269_0208_BH3W3KBBXY_GACCTGAA-TTGGTGAG_S22_L005_R1_001.fastq.gz 3964533067 FASTQ R1_L005 unaligned CPTAC3 d3d388e2-79e4-4f88-8337-43c48bc5afc3 9edb742df5706d39335de1a1e22f132f { 'aliquot_tag': 'ALQ_a15178ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03933.RNA-Seq.R1_.T C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 20210723_P2_A2_WB7988-plate2_S2_R1_001.fastq.gz 5127154253 FASTQ R1_ unaligned CPTAC3 d52e8a47-7228-4773-8aad-1161900b961e 0eb33c34d64b66455894edbe4b9eb1b1 { 'aliquot_tag': 'ALQ_4b11d8c', 'gdc_sample_type': 'Primary Tumor' } -C3N-03933.RNA-Seq.R2_L004.T C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATCACG_S15_L004_R2_001.fastq.gz 3937845323 FASTQ R2_L004 unaligned CPTAC3 dd399b5f-07c0-49b2-bd2a-40ecb455382c 2400e6538a850a460d4f96f1228c81c2 { 'aliquot_tag': 'ALQ_e6f1023f', 'gdc_sample_type': 'Primary Tumor' } -C3N-03933.RNA-Seq.R2_L005.A C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 190411_UNC31-K00269_0208_BH3W3KBBXY_GACCTGAA-TTGGTGAG_S22_L005_R2_001.fastq.gz 4314337980 FASTQ R2_L005 unaligned CPTAC3 4ce107ec-5214-4e15-9f89-d8384bfe344b 7be65d71c3e2d807cb62f7f1b78fdff1 { 'aliquot_tag': 'ALQ_a15178ef', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-03933.RNA-Seq.R2_.T C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 20210723_P2_A2_WB7988-plate2_S2_R2_001.fastq.gz 5209190246 FASTQ R2_ unaligned CPTAC3 470782ea-f98a-458f-a619-42beeee414af 3601941acae108a1c7a4d6212a753952 { 'aliquot_tag': 'ALQ_4b11d8c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03933.RNA-Seq.chimeric.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 2a9a5320-b45b-4a69-a9ad-0f56139d719c.rna_seq.chimeric.gdc_realn.bam 143341777 BAM chimeric harmonized CPTAC3 3cab17e2-0f9e-4086-bd7d-993fadd51672 87e6446b9b0a38d442aa58bcfca972eb { 'aliquot_tag': 'ALQ_4b11d8c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03933.RNA-Seq.genomic.A.hg38 C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 57443e9a-1907-4269-81bc-0a768fc2d0ec.rna_seq.genomic.gdc_realn.bam 8396260787 BAM genomic harmonized CPTAC3 ace8976d-ce14-4bf9-b982-628e88bf2856 e554fe747c3d3b987cf748494f3c94c8 { 'aliquot_tag': 'ALQ_a15178ef', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-03933.RNA-Seq.genomic.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 941fab72-d48d-46d4-8aeb-f395141c31c6.rna_seq.genomic.gdc_realn.bam 8429589321 BAM genomic harmonized CPTAC3 d088efbc-7368-4204-bbed-ec8f2c2ec523 1afb36d654a570e28332155bd85fbe5d { 'aliquot_tag': 'ALQ_e6f1023f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03933.RNA-Seq.genomic.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 2a9a5320-b45b-4a69-a9ad-0f56139d719c.rna_seq.genomic.gdc_realn.bam 8474617684 BAM genomic harmonized CPTAC3 8b521896-7bef-43c0-98bd-cbf32ebfc874 8eb66bc6c2a89bdc256ef7ea1f416f93 { 'aliquot_tag': 'ALQ_4b11d8c', 'gdc_sample_type': 'Primary Tumor' } +C3N-03933.RNA-Seq.R1_L004.T C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATCACG_S15_L004_R1_001.fastq.gz 4100140757 FASTQ R1_L004 unaligned CPTAC3 1551efe9-d971-49e8-b106-97529a3bc83f f838fbf6959f2ee0620a81f1a0d9ccaa { 'aliquot_tag': 'ALQ_e6f1023f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-03933.RNA-Seq.R1_L005.A C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 190411_UNC31-K00269_0208_BH3W3KBBXY_GACCTGAA-TTGGTGAG_S22_L005_R1_001.fastq.gz 3964533067 FASTQ R1_L005 unaligned CPTAC3 d3d388e2-79e4-4f88-8337-43c48bc5afc3 9edb742df5706d39335de1a1e22f132f { 'aliquot_tag': 'ALQ_a15178ef', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-03933.RNA-Seq.R2_L004.T C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 190328_UNC31-K00269_0204_BH5F5NBBXY_ATCACG_S15_L004_R2_001.fastq.gz 3937845323 FASTQ R2_L004 unaligned CPTAC3 dd399b5f-07c0-49b2-bd2a-40ecb455382c 2400e6538a850a460d4f96f1228c81c2 { 'aliquot_tag': 'ALQ_e6f1023f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-03933.RNA-Seq.R2_L005.A C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 190411_UNC31-K00269_0208_BH3W3KBBXY_GACCTGAA-TTGGTGAG_S22_L005_R2_001.fastq.gz 4314337980 FASTQ R2_L005 unaligned CPTAC3 4ce107ec-5214-4e15-9f89-d8384bfe344b 7be65d71c3e2d807cb62f7f1b78fdff1 { 'aliquot_tag': 'ALQ_a15178ef', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-03933.RNA-Seq.T C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 20210723_P2_A2_WB7988-plate2_S2_R1_001.fastq.gz 5127154253 FASTQ unaligned CPTAC3 d52e8a47-7228-4773-8aad-1161900b961e 0eb33c34d64b66455894edbe4b9eb1b1 +C3N-03933.RNA-Seq.T C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 20210723_P2_A2_WB7988-plate2_S2_R2_001.fastq.gz 5209190246 FASTQ unaligned CPTAC3 470782ea-f98a-458f-a619-42beeee414af 3601941acae108a1c7a4d6212a753952 C3N-03933.RNA-Seq.transcriptome.A.hg38 C3N-03933 HNSCC RNA-Seq tissue_normal CPT0220620009 57443e9a-1907-4269-81bc-0a768fc2d0ec.rna_seq.transcriptome.gdc_realn.bam 12566829813 BAM transcriptome harmonized CPTAC3 7cfff12f-b806-49ff-8842-95bf2d42b60c 690798b74531690c09d3e22594b8903c { 'aliquot_tag': 'ALQ_a15178ef', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-03933.RNA-Seq.transcriptome.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220610009 941fab72-d48d-46d4-8aeb-f395141c31c6.rna_seq.transcriptome.gdc_realn.bam 10418933188 BAM transcriptome harmonized CPTAC3 666a82b1-de99-4370-ae48-6616f98fe6c4 27566525828e0300381b4021999eba52 { 'aliquot_tag': 'ALQ_e6f1023f', 'gdc_sample_type': 'Primary Tumor' } +C3N-03933.RNA-Seq.transcriptome.T.hg38 C3N-03933 HNSCC RNA-Seq tumor CPT0220650011 2a9a5320-b45b-4a69-a9ad-0f56139d719c.rna_seq.transcriptome.gdc_realn.bam 7025915841 BAM transcriptome harmonized CPTAC3 6914ccfb-ce19-4991-b5e6-4e4462d9e4f9 e76745c85eb374806e4a2767fad6b0b4 { 'aliquot_tag': 'ALQ_4b11d8c', 'gdc_sample_type': 'Primary Tumor' } C3N-03933.WGS.N C3N-03933 HNSCC WGS blood_normal CPT0220710002 CPT0220710002.WholeGenome.RP-1303.bam 71725820849 BAM aligned CPTAC3 870433f0-51df-42d2-bce9-ec6ad1c49bc3 0902bfa86275190ee1b5c63e2a5dc5a3 { 'aliquot_tag': 'ALQ_ba7f0812', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03933.WGS.N.hg38 C3N-03933 HNSCC WGS blood_normal CPT0220710002 66668ae5-3dca-4c21-b69d-946610b983cb_wgs_gdc_realn.bam 103653416516 BAM harmonized CPTAC3 fea437c3-bce1-48d3-b215-c8dcc4cfd6c0 5b56e32c22328fef9166d846ba980bd7 { 'aliquot_tag': 'ALQ_ba7f0812', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03933.WGS.T C3N-03933 HNSCC WGS tumor CPT0220610006 CPT0220610006.WholeGenome.RP-1303.bam 69133706222 BAM aligned CPTAC3 656bb6dc-555f-4202-80f1-e9f2d69d7d24 5331576993644f3378e9b112d4c497b6 { 'aliquot_tag': 'ALQ_764e1fae', 'gdc_sample_type': 'Primary Tumor' } @@ -36977,11 +39349,11 @@ C3N-03935.MethArray.Green.T C3N-03935 GBM Methylation Array tumor CPT0285340006 C3N-03935.MethArray.Red.T C3N-03935 GBM Methylation Array tumor CPT0285340006 204367490029_R01C01_Red.idat 13677885 IDAT Red NA CPTAC3 64108981-a48e-464f-9e82-4ee2c2ca448d 63527f45cc13a92708b3e7cce3c0e89d { 'aliquot_tag': 'ALQ_2d9b3202', 'gdc_sample_type': 'Primary Tumor' } C3N-03935.miRNA-Seq.T C3N-03935 GBM miRNA-Seq tumor CPT0285340009 200403_UNC31-K00269_0274_AHCF7GBBXY_CGGAAT_S13_L001_R1_001.unaln.bam 286598162 BAM unaligned CPTAC3 c0113773-3e21-4991-82ca-7f9be7a7fbde 37b763363fc4ac2b5bf9f3023414a0e2 { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor' } C3N-03935.miRNA-Seq.T.hg38 C3N-03935 GBM miRNA-Seq tumor CPT0285340009 d866761c-b106-45a7-a5ca-af2b3bf16c14_mirnaseq_gdc_realn.bam 329521659 BAM harmonized CPTAC3 d5b0b9d3-3fc2-46c7-8d17-ed8cd9b6a9b1 c4f33e1711a5e8e744efc7c43ab19ef7 { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor' } -C3N-03935.RNA-Seq.chimeric.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 4bf98cbc-d1de-40c9-847c-9d473ec60715.rna_seq.chimeric.gdc_realn.bam 21975148 BAM chimeric harmonized CPTAC3 432f8d43-a9a2-4194-905f-e572effbd484 ed40362e0d8c8be2664fe63246a8fe57 { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor' } -C3N-03935.RNA-Seq.genomic.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 4bf98cbc-d1de-40c9-847c-9d473ec60715.rna_seq.genomic.gdc_realn.bam 6998797356 BAM genomic harmonized CPTAC3 17317aae-3315-4630-a481-3cc3d0dd9246 962dc3765ef4baa973cbecb2dba5978b { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor' } -C3N-03935.RNA-Seq.R1_L008.T C3N-03935 GBM RNA-Seq tumor CPT0285340009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3111435295 FASTQ R1_L008 unaligned CPTAC3 4c91740e-2276-47a4-9b32-c7720ab51594 6207b00bd1f4df987ac214c6de4366c0 { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor' } -C3N-03935.RNA-Seq.R2_L008.T C3N-03935 GBM RNA-Seq tumor CPT0285340009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3603920661 FASTQ R2_L008 unaligned CPTAC3 87079c71-53a8-4bf0-925d-e914da7bfd96 e253a53c0ef2eedb1d4ffe272a685192 { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor' } -C3N-03935.RNA-Seq.transcriptome.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 4bf98cbc-d1de-40c9-847c-9d473ec60715.rna_seq.transcriptome.gdc_realn.bam 6043623919 BAM transcriptome harmonized CPTAC3 4e54ec8d-d1a5-42cf-b649-b0a025fffd1c ae05016b6ec3e13709ba6b5b875d8f88 { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor' } +C3N-03935.RNA-Seq.chimeric.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 f4cd99ac-f7e2-4b64-9b4a-010fbcadd971.rna_seq.chimeric.gdc_realn.bam 21960147 BAM chimeric harmonized CPTAC3 3ecf537d-f410-4880-b0ea-2e4d3c5ff666 c82116427a4fec6b2eb4b0f7f06b3a6d { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor' } +C3N-03935.RNA-Seq.genomic.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 f4cd99ac-f7e2-4b64-9b4a-010fbcadd971.rna_seq.genomic.gdc_realn.bam 6999609466 BAM genomic harmonized CPTAC3 93b9b907-2322-4836-bab9-49ae62bac304 e90ca19648bac5b67881008a133e4945 { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor' } +C3N-03935.RNA-Seq.R1_L008.T C3N-03935 GBM RNA-Seq tumor CPT0285340009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R1_001.fastq.gz 3111435295 FASTQ R1_L008 unaligned CPTAC3 4c91740e-2276-47a4-9b32-c7720ab51594 6207b00bd1f4df987ac214c6de4366c0 { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03935.RNA-Seq.R2_L008.T C3N-03935 GBM RNA-Seq tumor CPT0285340009 200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3603920661 FASTQ R2_L008 unaligned CPTAC3 87079c71-53a8-4bf0-925d-e914da7bfd96 e253a53c0ef2eedb1d4ffe272a685192 { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03935.RNA-Seq.transcriptome.T.hg38 C3N-03935 GBM RNA-Seq tumor CPT0285340009 f4cd99ac-f7e2-4b64-9b4a-010fbcadd971.rna_seq.transcriptome.gdc_realn.bam 6875036624 BAM transcriptome harmonized CPTAC3 57c4f4ff-ad6a-4a1e-8d54-90fa2d10c866 83a8931d75698ed83ab48df8c1ab741a { 'aliquot_tag': 'ALQ_bd242f93', 'gdc_sample_type': 'Primary Tumor' } C3N-03935.WGS.N C3N-03935 GBM WGS blood_normal CPT0285370002 CPT0285370002.WholeGenome.RP-2158.bam 22774513143 BAM aligned CPTAC3 d680c188-bf02-4929-8ce0-aaceb1c9d6d6 9583443718a3e2cd7c682f9827ce7e3d { 'aliquot_tag': 'ALQ_6d568ccb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03935.WGS.N.hg38 C3N-03935 GBM WGS blood_normal CPT0285370002 6d9e79c5-a520-4b3b-bae8-a483281851f4_wgs_gdc_realn.bam 65995432537 BAM harmonized CPTAC3 8d17e3f0-ff4c-4b01-a090-2dc7d653f96e 113dde5c3d411817995ede6350b87eb3 { 'aliquot_tag': 'ALQ_6d568ccb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03935.WGS.T C3N-03935 GBM WGS tumor CPT0285340006 CPT0285340006.WholeGenome.RP-2158.bam 24454872786 BAM aligned CPTAC3 a7426cb5-a1d7-4401-a1bc-ddd7d9ec45ee faf0457669fb6285f208f1dd86aa0e8b { 'aliquot_tag': 'ALQ_2d9b3202', 'gdc_sample_type': 'Primary Tumor' } @@ -36994,11 +39366,11 @@ C3N-03939.MethArray.Green.T C3N-03939 GBM Methylation Array tumor CPT0285390006 C3N-03939.MethArray.Red.T C3N-03939 GBM Methylation Array tumor CPT0285390006 204372030076_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 a9362c30-c06e-4bae-acb9-a6ee2cf24f8e 156bc292815fe7a48d4a2b53beadad1c { 'aliquot_tag': 'ALQ_d50bf6b3', 'gdc_sample_type': 'Primary Tumor' } C3N-03939.miRNA-Seq.T C3N-03939 GBM miRNA-Seq tumor CPT0285390009 200403_UNC31-K00269_0274_AHCF7GBBXY_CTAGCT_S14_L001_R1_001.unaln.bam 245524484 BAM unaligned CPTAC3 f61d0b3c-0939-49f5-9038-3a4e0363e06f bf2686dba8542b7a8ee8aed745253095 { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor' } C3N-03939.miRNA-Seq.T.hg38 C3N-03939 GBM miRNA-Seq tumor CPT0285390009 c7dd3a3c-1814-4218-9edb-45c98aa846a8_mirnaseq_gdc_realn.bam 270906743 BAM harmonized CPTAC3 484956df-24ec-46be-96c9-79a50bc2041d 2d66bebf22009c8cd58daecaac2b86f7 { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03939.RNA-Seq.chimeric.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 fa20e0dc-e995-42d9-ab5f-9664b8a545d1.rna_seq.chimeric.gdc_realn.bam 19398587 BAM chimeric harmonized CPTAC3 f1cebedc-2024-47a0-8565-ea4ed239fcb8 318ed782412898adbc49ffeb3b022836 { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03939.RNA-Seq.genomic.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 fa20e0dc-e995-42d9-ab5f-9664b8a545d1.rna_seq.genomic.gdc_realn.bam 6356066293 BAM genomic harmonized CPTAC3 893bf981-cafd-4379-a69e-9af20603aa28 58438a5c84c9aeba13cbc038c01fd2fe { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03939.RNA-Seq.R1_L008.T C3N-03939 GBM RNA-Seq tumor CPT0285390009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R1_001.fastq.gz 2881386932 FASTQ R1_L008 unaligned CPTAC3 3f4dd232-5cba-4b97-bd63-f47967a5436a c9acc87c1e32d5a307249b6fe38e447f { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03939.RNA-Seq.R2_L008.T C3N-03939 GBM RNA-Seq tumor CPT0285390009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R2_001.fastq.gz 3302047909 FASTQ R2_L008 unaligned CPTAC3 452a0caf-f993-41ba-9f18-1a1180aeb710 8c18199b770ebbb65a9b55a6aace1b68 { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor' } -C3N-03939.RNA-Seq.transcriptome.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 fa20e0dc-e995-42d9-ab5f-9664b8a545d1.rna_seq.transcriptome.gdc_realn.bam 7357632309 BAM transcriptome harmonized CPTAC3 8ea5c712-a807-498e-a8bc-e9a54670de19 5953e6dda881bb7b64398d79d485eb8e { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor' } +C3N-03939.RNA-Seq.chimeric.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 84976428-d754-441f-9564-8a693513d44d.rna_seq.chimeric.gdc_realn.bam 19392687 BAM chimeric harmonized CPTAC3 33d4ecf9-f53f-4c6a-a671-3fdb1243ae46 42a033450ee7c03f9abb9610ec06ea09 { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor' } +C3N-03939.RNA-Seq.genomic.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 84976428-d754-441f-9564-8a693513d44d.rna_seq.genomic.gdc_realn.bam 6357210576 BAM genomic harmonized CPTAC3 4217f956-1d52-4f25-a2ca-5e14858f9c7c 77e4891808c737cb7eb11445e42ad65f { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor' } +C3N-03939.RNA-Seq.R1_L008.T C3N-03939 GBM RNA-Seq tumor CPT0285390009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R1_001.fastq.gz 2881386932 FASTQ R1_L008 unaligned CPTAC3 3f4dd232-5cba-4b97-bd63-f47967a5436a c9acc87c1e32d5a307249b6fe38e447f { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-03939.RNA-Seq.R2_L008.T C3N-03939 GBM RNA-Seq tumor CPT0285390009 200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R2_001.fastq.gz 3302047909 FASTQ R2_L008 unaligned CPTAC3 452a0caf-f993-41ba-9f18-1a1180aeb710 8c18199b770ebbb65a9b55a6aace1b68 { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-03939.RNA-Seq.transcriptome.T.hg38 C3N-03939 GBM RNA-Seq tumor CPT0285390009 84976428-d754-441f-9564-8a693513d44d.rna_seq.transcriptome.gdc_realn.bam 8358938403 BAM transcriptome harmonized CPTAC3 b67aa98e-7156-4f73-a8be-905f562cb6a2 a5ee8f21077cdc0f3b585fab7f7f64a2 { 'aliquot_tag': 'ALQ_45b4eb22', 'gdc_sample_type': 'Primary Tumor' } C3N-03939.WGS.N C3N-03939 GBM WGS blood_normal CPT0285410002 CPT0285410002.WholeGenome.RP-2158.bam 27430682246 BAM aligned CPTAC3 719de53d-9cb1-4d43-8b73-bc277df19224 7f4513d241c5df965c9be0434562c316 { 'aliquot_tag': 'ALQ_ff1349d3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03939.WGS.N.hg38 C3N-03939 GBM WGS blood_normal CPT0285410002 6895aee0-3fa1-49d9-9d49-2e22f2f3743b_wgs_gdc_realn.bam 81852016126 BAM harmonized CPTAC3 c84d71d0-5ca9-4237-bab1-93228f81c37e 7acb24f258bd2d11eddb67290f1dcfc3 { 'aliquot_tag': 'ALQ_ff1349d3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-03939.WGS.T C3N-03939 GBM WGS tumor CPT0285390006 CPT0285390006.WholeGenome.RP-2158.bam 25775708475 BAM aligned CPTAC3 ba5428f4-d7c6-479a-9214-d7e1a4947ecf ea8ec285146eb2733f18adfa12fa2403 { 'aliquot_tag': 'ALQ_d50bf6b3', 'gdc_sample_type': 'Primary Tumor' } @@ -37011,11 +39383,11 @@ C3N-04092.MethArray.Green.T C3N-04092 GBM Methylation Array tumor CPT0285440006 C3N-04092.MethArray.Red.T C3N-04092 GBM Methylation Array tumor CPT0285440006 204372030072_R01C01_Red.idat 13677880 IDAT Red NA CPTAC3 cab1d1c1-60c4-40f0-8558-8773ca36b8f1 d77e44bcc32b7a698642b2e32a0d53a1 { 'aliquot_tag': 'ALQ_309e02ba', 'gdc_sample_type': 'Primary Tumor' } C3N-04092.miRNA-Seq.T C3N-04092 GBM miRNA-Seq tumor CPT0285440009 200403_UNC31-K00269_0274_AHCF7GBBXY_CTATAC_S15_L001_R1_001.unaln.bam 247318813 BAM unaligned CPTAC3 91b1bd12-b236-4f6c-911d-7db6a9a672af 5e8d424c1233a731e08bad1e213cf549 { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor' } C3N-04092.miRNA-Seq.T.hg38 C3N-04092 GBM miRNA-Seq tumor CPT0285440009 b8e7d110-81d4-488f-a6ac-88818105d58c_mirnaseq_gdc_realn.bam 274868455 BAM harmonized CPTAC3 5fc1f505-741a-4c21-977e-a69c068dddf4 fdee458d6d3a8b3c005b47914f926afd { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04092.RNA-Seq.chimeric.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 ef67c8c2-c41f-4d37-aea9-2e6647143478.rna_seq.chimeric.gdc_realn.bam 26126676 BAM chimeric harmonized CPTAC3 dd36112c-5df5-460c-a839-f693d8f9d72c 34937752736be942ade7228661e82f00 { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04092.RNA-Seq.genomic.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 ef67c8c2-c41f-4d37-aea9-2e6647143478.rna_seq.genomic.gdc_realn.bam 6338099922 BAM genomic harmonized CPTAC3 54609a39-70f6-4662-ae7e-dcc1c6037970 340f7428b441562ae48f985855bc14e1 { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04092.RNA-Seq.R1_L008.T C3N-04092 GBM RNA-Seq tumor CPT0285440009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R1_001.fastq.gz 2896844741 FASTQ R1_L008 unaligned CPTAC3 34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39 096b63e1e02fadb2964865f85145f210 { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04092.RNA-Seq.R2_L008.T C3N-04092 GBM RNA-Seq tumor CPT0285440009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R2_001.fastq.gz 3312390931 FASTQ R2_L008 unaligned CPTAC3 07a3bbdc-69c2-485b-98b2-82ada22cae69 381c644f9e1d582e1d7238a5cfd0065c { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04092.RNA-Seq.transcriptome.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 ef67c8c2-c41f-4d37-aea9-2e6647143478.rna_seq.transcriptome.gdc_realn.bam 5985265945 BAM transcriptome harmonized CPTAC3 755b99b8-6ce0-4401-8e4f-334848f42864 892af4094a1eb01f4f0379afac9877a3 { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04092.RNA-Seq.chimeric.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 f9c72d96-55ce-48f9-a0ab-ec19a00e8017.rna_seq.chimeric.gdc_realn.bam 26117157 BAM chimeric harmonized CPTAC3 ac623e92-a549-42e6-af8a-e217bd6eb31c d2aea394c3695c8819b65b35edfaa339 { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04092.RNA-Seq.genomic.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 f9c72d96-55ce-48f9-a0ab-ec19a00e8017.rna_seq.genomic.gdc_realn.bam 6339005273 BAM genomic harmonized CPTAC3 62103b7c-375e-4d4b-9527-397101cacfd4 d9155e9bae961e9e32f6c87fcacf807d { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04092.RNA-Seq.R1_L008.T C3N-04092 GBM RNA-Seq tumor CPT0285440009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R1_001.fastq.gz 2896844741 FASTQ R1_L008 unaligned CPTAC3 34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39 096b63e1e02fadb2964865f85145f210 { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-04092.RNA-Seq.R2_L008.T C3N-04092 GBM RNA-Seq tumor CPT0285440009 200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R2_001.fastq.gz 3312390931 FASTQ R2_L008 unaligned CPTAC3 07a3bbdc-69c2-485b-98b2-82ada22cae69 381c644f9e1d582e1d7238a5cfd0065c { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-04092.RNA-Seq.transcriptome.T.hg38 C3N-04092 GBM RNA-Seq tumor CPT0285440009 f9c72d96-55ce-48f9-a0ab-ec19a00e8017.rna_seq.transcriptome.gdc_realn.bam 6845484963 BAM transcriptome harmonized CPTAC3 5479e396-2db3-455b-b611-d797db731225 5eb38a350d72f6cb7c358823bdf55bc3 { 'aliquot_tag': 'ALQ_a0211f2b', 'gdc_sample_type': 'Primary Tumor' } C3N-04092.WGS.N C3N-04092 GBM WGS blood_normal CPT0285450002 CPT0285450002.WholeGenome.RP-2158.bam 24498698839 BAM aligned CPTAC3 566f7b48-65df-4fb3-87bc-8586884af4f1 4163c5eed29b6e10dcb8b8a00961bafd { 'aliquot_tag': 'ALQ_a93ef13', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04092.WGS.N.hg38 C3N-04092 GBM WGS blood_normal CPT0285450002 79ce8e10-2d6f-4d92-a58c-a34c06af7677_wgs_gdc_realn.bam 74020875117 BAM harmonized CPTAC3 4c77804a-0e1e-449d-affb-55a849b06bc3 3f195251abf1d37de6e5480af6240e0f { 'aliquot_tag': 'ALQ_a93ef13', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04092.WGS.T C3N-04092 GBM WGS tumor CPT0285440006 CPT0285440006.WholeGenome.RP-2158.bam 24504031508 BAM aligned CPTAC3 2bf06983-aea2-41c2-adf3-ff62afc65962 065d7f442c1dd8244cbc7acf702d09e3 { 'aliquot_tag': 'ALQ_309e02ba', 'gdc_sample_type': 'Primary Tumor' } @@ -37028,11 +39400,11 @@ C3N-04094.MethArray.Green.T C3N-04094 GBM Methylation Array tumor CPT0285460007 C3N-04094.MethArray.Red.T C3N-04094 GBM Methylation Array tumor CPT0285460007 204367470131_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 87a4544c-b6d3-4560-aaf8-81719f14b3eb 5c9d3a1f850764061ce770c389085aef { 'aliquot_tag': 'ALQ_3d59614c', 'gdc_sample_type': 'Primary Tumor' } C3N-04094.miRNA-Seq.T C3N-04094 GBM miRNA-Seq tumor CPT0285460010 200403_UNC31-K00269_0274_AHCF7GBBXY_CTCAGA_S16_L001_R1_001.unaln.bam 149874462 BAM unaligned CPTAC3 a8e314a0-82cb-467d-8341-0d0069bb2b0e 67045085535b61b9aea205dd5f731436 { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor' } C3N-04094.miRNA-Seq.T.hg38 C3N-04094 GBM miRNA-Seq tumor CPT0285460010 16e7f672-0451-45e7-b0a8-a5a62491ea99_mirnaseq_gdc_realn.bam 165882365 BAM harmonized CPTAC3 ab2a0a68-a90a-454d-86ad-b9bc2aaf99dc dcd88526e635e2263dd3d42d34e6dbed { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor' } -C3N-04094.RNA-Seq.chimeric.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 7838974d-342d-4684-acce-3afb87900843.rna_seq.chimeric.gdc_realn.bam 51390132 BAM chimeric harmonized CPTAC3 bce4a7e7-28f2-47b3-a1ca-e26997c4beff 233017d9ddbd256bf76aca6c7218fdd8 { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor' } -C3N-04094.RNA-Seq.genomic.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 7838974d-342d-4684-acce-3afb87900843.rna_seq.genomic.gdc_realn.bam 11461072129 BAM genomic harmonized CPTAC3 077ecaaf-5bbd-46fa-a12f-3482bb0a6480 adce8ea4cb6d6df19a5787345485ce67 { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor' } -C3N-04094.RNA-Seq.R1_L006.T C3N-04094 GBM RNA-Seq tumor CPT0285460010 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R1_001.fastq.gz 5489923938 FASTQ R1_L006 unaligned CPTAC3 fa31d2b3-82b2-4734-8c22-ac89b732e8a2 cdfe6c623bfababea2e868a4ae59f0d7 { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor' } -C3N-04094.RNA-Seq.R2_L006.T C3N-04094 GBM RNA-Seq tumor CPT0285460010 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R2_001.fastq.gz 6031283932 FASTQ R2_L006 unaligned CPTAC3 254472af-7bd3-4dfb-9014-c2dc90560859 de8e1f778e080b5809fefcbc804cdcc0 { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor' } -C3N-04094.RNA-Seq.transcriptome.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 7838974d-342d-4684-acce-3afb87900843.rna_seq.transcriptome.gdc_realn.bam 11914753625 BAM transcriptome harmonized CPTAC3 b3516291-741d-4922-a24c-85c31b8277ab 1a31cbd1cdae5badb0dd9e1d2ad548c6 { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor' } +C3N-04094.RNA-Seq.chimeric.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 d2c9c292-43c8-4d64-8b4a-5d1d06e4a781.rna_seq.chimeric.gdc_realn.bam 51375356 BAM chimeric harmonized CPTAC3 419c5b79-8c1b-4122-9d86-118b4c9d2b1d 79d5214644e13930124126b05e0628fa { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor' } +C3N-04094.RNA-Seq.genomic.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 d2c9c292-43c8-4d64-8b4a-5d1d06e4a781.rna_seq.genomic.gdc_realn.bam 11462263435 BAM genomic harmonized CPTAC3 de26d2cc-6297-4625-8bb8-11911c9f1e8f a8149f059c9fdf05f7d98b22e11b541f { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor' } +C3N-04094.RNA-Seq.R1_L006.T C3N-04094 GBM RNA-Seq tumor CPT0285460010 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R1_001.fastq.gz 5489923938 FASTQ R1_L006 unaligned CPTAC3 fa31d2b3-82b2-4734-8c22-ac89b732e8a2 cdfe6c623bfababea2e868a4ae59f0d7 { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-04094.RNA-Seq.R2_L006.T C3N-04094 GBM RNA-Seq tumor CPT0285460010 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R2_001.fastq.gz 6031283932 FASTQ R2_L006 unaligned CPTAC3 254472af-7bd3-4dfb-9014-c2dc90560859 de8e1f778e080b5809fefcbc804cdcc0 { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-04094.RNA-Seq.transcriptome.T.hg38 C3N-04094 GBM RNA-Seq tumor CPT0285460010 d2c9c292-43c8-4d64-8b4a-5d1d06e4a781.rna_seq.transcriptome.gdc_realn.bam 13753296993 BAM transcriptome harmonized CPTAC3 a4edf812-4a4c-4f05-ac9a-22f4040ff901 5c76a547efa773dc39094922b930e1e0 { 'aliquot_tag': 'ALQ_ba26c5ae', 'gdc_sample_type': 'Primary Tumor' } C3N-04094.WGS.N C3N-04094 GBM WGS blood_normal CPT0285490002 CPT0285490002.WholeGenome.RP-2158.bam 32209259574 BAM aligned CPTAC3 96edcb35-53eb-4666-b388-713a74542f88 3dda872bd2942f35fabb36e1c84148b7 { 'aliquot_tag': 'ALQ_cf630212', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04094.WGS.N.hg38 C3N-04094 GBM WGS blood_normal CPT0285490002 1890659f-5698-4b8f-a0bf-1da6b3791731_wgs_gdc_realn.bam 94794094970 BAM harmonized CPTAC3 9f93ec20-1c38-41a0-8f96-28457caad083 4509d1b328ecd668f7f22457f604e4f9 { 'aliquot_tag': 'ALQ_cf630212', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04094.WGS.T C3N-04094 GBM WGS tumor CPT0285460007 CPT0285460007.WholeGenome.RP-2158.bam 22517447803 BAM aligned CPTAC3 8574b1b2-a42e-4fae-9300-61ae76f62d00 0b15efca7c6bac108588e65712c37f99 { 'aliquot_tag': 'ALQ_3d59614c', 'gdc_sample_type': 'Primary Tumor' } @@ -37045,11 +39417,11 @@ C3N-04097.MethArray.Green.T C3N-04097 GBM Methylation Array tumor CPT0285500006 C3N-04097.MethArray.Red.T C3N-04097 GBM Methylation Array tumor CPT0285500006 204372030164_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 343a7d43-de13-4bb2-9b70-c6fba43a1c06 a6f9d2a70038e18c02d622f0d11b3feb { 'aliquot_tag': 'ALQ_e4277df', 'gdc_sample_type': 'Primary Tumor' } C3N-04097.miRNA-Seq.T C3N-04097 GBM miRNA-Seq tumor CPT0285500009 200403_UNC31-K00269_0274_AHCF7GBBXY_GACGAC_S17_L001_R1_001.unaln.bam 259764215 BAM unaligned CPTAC3 a9428f90-fc78-4575-b8cb-96de3e36296f bbcf7fc25087244596d20e732ad5f913 { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor' } C3N-04097.miRNA-Seq.T.hg38 C3N-04097 GBM miRNA-Seq tumor CPT0285500009 7370bed1-5db7-4796-9763-d586cd61377e_mirnaseq_gdc_realn.bam 291557531 BAM harmonized CPTAC3 7055fdfe-5233-425f-9ed6-24158dcc0afd d931adbc27b0322a0f5d6d12d7e9d19a { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04097.RNA-Seq.chimeric.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 55972dfa-522e-412f-9929-2b381be14a72.rna_seq.chimeric.gdc_realn.bam 27580623 BAM chimeric harmonized CPTAC3 56492d7d-d835-4a7b-b2e6-6512863e501a 8d1a9ec3623b82353091be614ffd8245 { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04097.RNA-Seq.genomic.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 55972dfa-522e-412f-9929-2b381be14a72.rna_seq.genomic.gdc_realn.bam 6663444282 BAM genomic harmonized CPTAC3 f4942758-0812-4030-86e4-bc3ab9240bbf 9a3a9418dc7267f8aad2c2fd8a8ed20c { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04097.RNA-Seq.R1_L004.T C3N-04097 GBM RNA-Seq tumor CPT0285500009 200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R1_001.fastq.gz 3206768037 FASTQ R1_L004 unaligned CPTAC3 9e14644a-eeec-4d36-a439-d7defafab519 0984770fa06a36ea6ea3e9a65080a01a { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04097.RNA-Seq.R2_L004.T C3N-04097 GBM RNA-Seq tumor CPT0285500009 200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R2_001.fastq.gz 3546803900 FASTQ R2_L004 unaligned CPTAC3 f1b1a394-d643-496b-b856-60147ea00c1a 82bb59dd2209eb45feae2645291434b5 { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04097.RNA-Seq.transcriptome.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 55972dfa-522e-412f-9929-2b381be14a72.rna_seq.transcriptome.gdc_realn.bam 6928588116 BAM transcriptome harmonized CPTAC3 968839ab-91b1-40d3-8489-6ea6fac6ba5c 471a592cfc4e33321c0a6bd5d4c2f5db { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04097.RNA-Seq.chimeric.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 61166de5-e801-4ee5-88b7-1a9a085c1dc4.rna_seq.chimeric.gdc_realn.bam 27565623 BAM chimeric harmonized CPTAC3 6e5914c8-c63a-42c4-911a-33419acf253d 4247b4f14edc4a42493fdb60c97c4b40 { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04097.RNA-Seq.genomic.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 61166de5-e801-4ee5-88b7-1a9a085c1dc4.rna_seq.genomic.gdc_realn.bam 6664163855 BAM genomic harmonized CPTAC3 d750825b-4fde-4bca-a2ff-c87bb4ca22c1 58c0f857500d6fec9f2d0451f1fbefb3 { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04097.RNA-Seq.R1_L004.T C3N-04097 GBM RNA-Seq tumor CPT0285500009 200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R1_001.fastq.gz 3206768037 FASTQ R1_L004 unaligned CPTAC3 9e14644a-eeec-4d36-a439-d7defafab519 0984770fa06a36ea6ea3e9a65080a01a { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-04097.RNA-Seq.R2_L004.T C3N-04097 GBM RNA-Seq tumor CPT0285500009 200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R2_001.fastq.gz 3546803900 FASTQ R2_L004 unaligned CPTAC3 f1b1a394-d643-496b-b856-60147ea00c1a 82bb59dd2209eb45feae2645291434b5 { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-04097.RNA-Seq.transcriptome.T.hg38 C3N-04097 GBM RNA-Seq tumor CPT0285500009 61166de5-e801-4ee5-88b7-1a9a085c1dc4.rna_seq.transcriptome.gdc_realn.bam 8025555743 BAM transcriptome harmonized CPTAC3 65aa658f-ef1f-4d59-9326-30702028052d 1a5b012bac73e8c20b2375aa2de10050 { 'aliquot_tag': 'ALQ_9efd6a4e', 'gdc_sample_type': 'Primary Tumor' } C3N-04097.WGS.N C3N-04097 GBM WGS blood_normal CPT0285530002 CPT0285530002.WholeGenome.RP-2158.bam 29954202898 BAM aligned CPTAC3 fc560399-532f-4dd8-b751-b8918dce92a0 677983628c2001d417bd3e165463bfbe { 'aliquot_tag': 'ALQ_4e8fc916', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04097.WGS.N.hg38 C3N-04097 GBM WGS blood_normal CPT0285530002 926063e7-fbde-4313-8074-4ca104eef182_wgs_gdc_realn.bam 89113536785 BAM harmonized CPTAC3 4784a3d9-c761-4a61-9dac-3d84eb853c59 5b048f201405f108765411ce5db2bbc2 { 'aliquot_tag': 'ALQ_4e8fc916', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04097.WGS.T C3N-04097 GBM WGS tumor CPT0285500006 CPT0285500006.WholeGenome.RP-2158.bam 28363607419 BAM aligned CPTAC3 f9c5426f-dacd-426f-9a0f-897ccad93344 e2ab05ff6917d412f766e6f5e948d6fa { 'aliquot_tag': 'ALQ_e4277df', 'gdc_sample_type': 'Primary Tumor' } @@ -37062,11 +39434,11 @@ C3N-04098.MethArray.Green.T C3N-04098 GBM Methylation Array tumor CPT0285540007 C3N-04098.MethArray.Red.T C3N-04098 GBM Methylation Array tumor CPT0285540007 204372030085_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 3c91d6ac-4127-44bc-9f33-d58a07e3887d 4b613e2bf977fc871d488f79c5c40871 { 'aliquot_tag': 'ALQ_8cc5e189', 'gdc_sample_type': 'Primary Tumor' } C3N-04098.miRNA-Seq.T C3N-04098 GBM miRNA-Seq tumor CPT0285540010 200403_UNC31-K00269_0274_AHCF7GBBXY_TAATCG_S18_L001_R1_001.unaln.bam 257392272 BAM unaligned CPTAC3 a42fe332-87d4-4a16-a2ad-de9c84e8cee1 bad4e0983479bac0f19571e392f20a6f { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor' } C3N-04098.miRNA-Seq.T.hg38 C3N-04098 GBM miRNA-Seq tumor CPT0285540010 f8ef438d-5435-410c-981e-3c637c1a913b_mirnaseq_gdc_realn.bam 288457553 BAM harmonized CPTAC3 76804205-4e1a-44fc-b05b-c7db2d525060 405f3bc4f2797c9dfc1eabef7cee027e { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04098.RNA-Seq.chimeric.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 5ff73cba-906f-4e07-a584-8eea6c8bb0e2.rna_seq.chimeric.gdc_realn.bam 23266927 BAM chimeric harmonized CPTAC3 d91a68d2-07f0-410d-8f8e-3f38e7911492 184c2b7e38ec8c0750e8eb8182e420d6 { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04098.RNA-Seq.genomic.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 5ff73cba-906f-4e07-a584-8eea6c8bb0e2.rna_seq.genomic.gdc_realn.bam 5854312850 BAM genomic harmonized CPTAC3 f3ccc68e-a92d-49dd-a6ac-7f9a636490da c59757edf711ccd2e66d95678a7a4e8d { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04098.RNA-Seq.R1_L004.T C3N-04098 GBM RNA-Seq tumor CPT0285540010 200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R1_001.fastq.gz 2769564498 FASTQ R1_L004 unaligned CPTAC3 e4772d8e-0ded-4236-8602-1b1dfe51e8df a2c47ebaa52301b2b649605b70283058 { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04098.RNA-Seq.R2_L004.T C3N-04098 GBM RNA-Seq tumor CPT0285540010 200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R2_001.fastq.gz 3112888700 FASTQ R2_L004 unaligned CPTAC3 129e4b38-443f-4cf9-8e20-f98ccef517c8 ca8808351719f9cebd4bfb9948814dfc { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04098.RNA-Seq.transcriptome.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 5ff73cba-906f-4e07-a584-8eea6c8bb0e2.rna_seq.transcriptome.gdc_realn.bam 6051345098 BAM transcriptome harmonized CPTAC3 781407ce-a5dd-4d0a-967d-ae47d632412a 7b5bc6b0ce0ebf95d07ef6807b741c24 { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04098.RNA-Seq.chimeric.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 da4abc56-9541-4b76-998e-2ba601fbe9fb.rna_seq.chimeric.gdc_realn.bam 23255846 BAM chimeric harmonized CPTAC3 9e1617d6-f327-4336-b709-639504f8fcd3 b0b0fbcb5fd625c556cacc16aea91d50 { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04098.RNA-Seq.genomic.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 da4abc56-9541-4b76-998e-2ba601fbe9fb.rna_seq.genomic.gdc_realn.bam 5855104607 BAM genomic harmonized CPTAC3 816ed8e8-b4a6-4f2b-8433-b5a020ab7b48 de7fdf70fe1264245cd681aacaf0549c { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04098.RNA-Seq.R1_L004.T C3N-04098 GBM RNA-Seq tumor CPT0285540010 200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R1_001.fastq.gz 2769564498 FASTQ R1_L004 unaligned CPTAC3 e4772d8e-0ded-4236-8602-1b1dfe51e8df a2c47ebaa52301b2b649605b70283058 { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-04098.RNA-Seq.R2_L004.T C3N-04098 GBM RNA-Seq tumor CPT0285540010 200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R2_001.fastq.gz 3112888700 FASTQ R2_L004 unaligned CPTAC3 129e4b38-443f-4cf9-8e20-f98ccef517c8 ca8808351719f9cebd4bfb9948814dfc { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-04098.RNA-Seq.transcriptome.T.hg38 C3N-04098 GBM RNA-Seq tumor CPT0285540010 da4abc56-9541-4b76-998e-2ba601fbe9fb.rna_seq.transcriptome.gdc_realn.bam 6937643241 BAM transcriptome harmonized CPTAC3 5fa1a184-e36e-4d47-8387-2f6104b37f99 e4efb4c667354848dbab301d83b8e131 { 'aliquot_tag': 'ALQ_bba456b', 'gdc_sample_type': 'Primary Tumor' } C3N-04098.WGS.N C3N-04098 GBM WGS blood_normal CPT0285570002 CPT0285570002.WholeGenome.RP-2158.bam 27310844142 BAM aligned CPTAC3 7750f7a5-f900-492e-bfe8-8eb204bb32c3 b38d23906173f49262d77fe7ea08d538 { 'aliquot_tag': 'ALQ_bb0f6fd6', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04098.WGS.N.hg38 C3N-04098 GBM WGS blood_normal CPT0285570002 6416d98a-0117-48ec-a6ea-0875e22f55aa_wgs_gdc_realn.bam 81502245485 BAM harmonized CPTAC3 4cf31016-4283-4728-a22e-b353f72b2ae7 a969ee7707fea38c2e8d3421a0ee312c { 'aliquot_tag': 'ALQ_bb0f6fd6', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04098.WGS.T C3N-04098 GBM WGS tumor CPT0285540007 CPT0285540007.WholeGenome.RP-2158.bam 24939569712 BAM aligned CPTAC3 d866896c-45d0-4928-8193-ad1e2aca0b4a 7ba1ba31d7a085a5d73b71b63ca6518b { 'aliquot_tag': 'ALQ_8cc5e189', 'gdc_sample_type': 'Primary Tumor' } @@ -37079,11 +39451,11 @@ C3N-04100.MethArray.Green.T C3N-04100 GBM Methylation Array tumor CPT0285590006 C3N-04100.MethArray.Red.T C3N-04100 GBM Methylation Array tumor CPT0285590006 204372030087_R02C01_Red.idat 13677880 IDAT Red NA CPTAC3 0081743c-0dc3-40b7-9c2d-3ed5bb447a98 315bad76f550028acbbdcb2d68143c4d { 'aliquot_tag': 'ALQ_35215ae', 'gdc_sample_type': 'Primary Tumor' } C3N-04100.miRNA-Seq.T C3N-04100 GBM miRNA-Seq tumor CPT0285590013 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCCCGA_S46_L008_R1_001.unaln.bam 177661367 BAM unaligned CPTAC3 601c2e37-5f34-490e-9d23-b35b0666b729 5efaffbc62c746d941ef22dbbb28571e { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor' } C3N-04100.miRNA-Seq.T.hg38 C3N-04100 GBM miRNA-Seq tumor CPT0285590013 9cbac332-c8ef-4f04-af5b-d1ef073c17e4_mirnaseq_gdc_realn.bam 196890022 BAM harmonized CPTAC3 4332b035-f3ff-425c-97d5-04c51097867c 23384249754801601ea4a09c62c6f440 { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor' } -C3N-04100.RNA-Seq.chimeric.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 ef63c4d5-ecac-4b0b-84c4-bbe60711a8d9.rna_seq.chimeric.gdc_realn.bam 27865624 BAM chimeric harmonized CPTAC3 bcbc9452-b482-41e5-8621-f0d01687fb08 14317827cfdade4e2e612bafe054fd12 { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor' } -C3N-04100.RNA-Seq.genomic.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 ef63c4d5-ecac-4b0b-84c4-bbe60711a8d9.rna_seq.genomic.gdc_realn.bam 7196019444 BAM genomic harmonized CPTAC3 e228574c-3267-45f4-95a2-cb35f048a799 085d5bc44798b37c43b6d4b31010ea5a { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor' } -C3N-04100.RNA-Seq.R1_L005.T C3N-04100 GBM RNA-Seq tumor CPT0285590013 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R1_001.fastq.gz 3439688996 FASTQ R1_L005 unaligned CPTAC3 d5d4dee6-5523-43c9-902b-c019c3a29533 00c4fd479a32cf9cb27e1dd76c87e47c { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor' } -C3N-04100.RNA-Seq.R2_L005.T C3N-04100 GBM RNA-Seq tumor CPT0285590013 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R2_001.fastq.gz 3823577433 FASTQ R2_L005 unaligned CPTAC3 92f769cc-3b94-4805-bef6-3de96959e898 bb91595c586526f3a8a51ddb8f2c94e8 { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor' } -C3N-04100.RNA-Seq.transcriptome.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 ef63c4d5-ecac-4b0b-84c4-bbe60711a8d9.rna_seq.transcriptome.gdc_realn.bam 7335197081 BAM transcriptome harmonized CPTAC3 c6de7588-ceed-4830-b16c-8d658ba10364 ddae8f7cc88641a139cfc8199a65aceb { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor' } +C3N-04100.RNA-Seq.chimeric.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 13dfadb6-2008-4e91-9b54-35441d1d0035.rna_seq.chimeric.gdc_realn.bam 27851232 BAM chimeric harmonized CPTAC3 3882af7b-59f3-49c5-aca5-771266b38ba0 b64ee998348b8e63492f255b45847bfa { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor' } +C3N-04100.RNA-Seq.genomic.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 13dfadb6-2008-4e91-9b54-35441d1d0035.rna_seq.genomic.gdc_realn.bam 7196840849 BAM genomic harmonized CPTAC3 6eb4e682-2784-4f2d-8250-496a40f3aeb2 79a1dbf1ef7deddf71d7c4b0692d1637 { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor' } +C3N-04100.RNA-Seq.R1_L005.T C3N-04100 GBM RNA-Seq tumor CPT0285590013 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R1_001.fastq.gz 3439688996 FASTQ R1_L005 unaligned CPTAC3 d5d4dee6-5523-43c9-902b-c019c3a29533 00c4fd479a32cf9cb27e1dd76c87e47c { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-04100.RNA-Seq.R2_L005.T C3N-04100 GBM RNA-Seq tumor CPT0285590013 200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R2_001.fastq.gz 3823577433 FASTQ R2_L005 unaligned CPTAC3 92f769cc-3b94-4805-bef6-3de96959e898 bb91595c586526f3a8a51ddb8f2c94e8 { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-04100.RNA-Seq.transcriptome.T.hg38 C3N-04100 GBM RNA-Seq tumor CPT0285590013 13dfadb6-2008-4e91-9b54-35441d1d0035.rna_seq.transcriptome.gdc_realn.bam 8494219540 BAM transcriptome harmonized CPTAC3 64fb89ba-1729-4c24-acc0-e0ef0993887f 71b88336166adbc38108f3c1114b435a { 'aliquot_tag': 'ALQ_6a23d060', 'gdc_sample_type': 'Primary Tumor' } C3N-04100.WGS.N C3N-04100 GBM WGS blood_normal CPT0285610002 CPT0285610002.WholeGenome.RP-2158.bam 21930007345 BAM aligned CPTAC3 7f74ed3f-e21c-4b44-84ad-49124953f987 3c9ea2075bac8d7319958b79fa0d44a5 { 'aliquot_tag': 'ALQ_b2dbe8d8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04100.WGS.N.hg38 C3N-04100 GBM WGS blood_normal CPT0285610002 e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wgs_gdc_realn.bam 66740897940 BAM harmonized CPTAC3 4d339a11-7fe1-4768-9bce-01c4d959a1b5 3047418fcddb4de262e2224aad8db920 { 'aliquot_tag': 'ALQ_b2dbe8d8', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04100.WGS.T C3N-04100 GBM WGS tumor CPT0285590006 CPT0285590006.WholeGenome.RP-2158.bam 26982190290 BAM aligned CPTAC3 51d10bc6-e276-4f15-8be4-8f45643913a0 5cb342ee12bdf68d10b8816071c2c7b6 { 'aliquot_tag': 'ALQ_35215ae', 'gdc_sample_type': 'Primary Tumor' } @@ -37101,16 +39473,22 @@ C3N-04113.miRNA-Seq.T.hg38 C3N-04113 GBM miRNA-Seq tumor CPT0285620009 cea639d4- C3N-04113.REP_7d56a3b1.MethArray.Green.T C3N-04113 GBM Methylation Array tumor CPT0285640006 205555390176_R05C01_Grn.idat 13677955 IDAT Green NA CPTAC3 75e8ad59-7e4e-4212-9e10-cc1650e4d469 a6ad99dea8e0330c9d418ed888135da5 { 'aliquot_tag': 'REP_7d56a3b1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } C3N-04113.REP_7d56a3b1.MethArray.Red.T C3N-04113 GBM Methylation Array tumor CPT0285640006 205555390176_R05C01_Red.idat 13677955 IDAT Red NA CPTAC3 01e08033-624d-46a3-a4de-b19d5a804ee5 05507d1faaaa0b674c092bbe4f943940 { 'aliquot_tag': 'REP_7d56a3b1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } C3N-04113.REP_7d56a3b1.WGS.T C3N-04113 GBM WGS tumor CPT0285640006 CPT0285640006.WholeGenome.RP-2158.bam 28355549625 BAM aligned CPTAC3 ab315250-4cd5-431b-84e7-483d1db2b003 3c8d11f094f03f4df52ac934bcab5db3 { 'aliquot_tag': 'REP_7d56a3b1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } +C3N-04113.REP_7d56a3b1.WGS.T.hg38 C3N-04113 GBM WGS tumor CPT0285640006 1ac39c4d-4742-4eea-ac1a-074503b7b5a4_wgs_gdc_realn.bam 84901748163 BAM harmonized CPTAC3 316589c0-c980-491c-85cb-ed6085aa0239 c57f6aba5619f0fb1460eef684b1656f { 'aliquot_tag': 'REP_7d56a3b1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } C3N-04113.REP_7d56a3b1.WXS.T C3N-04113 GBM WXS tumor CPT0285640006 CPT0285640006.WholeExome.RP-1303.bam 23107973738 BAM aligned CPTAC3 96d34906-3b49-43f7-b624-7575ad5611ec c2f0d49eea3427fd0f075fab674f96f2 { 'aliquot_tag': 'REP_7d56a3b1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } +C3N-04113.REP_7d56a3b1.WXS.T.hg38 C3N-04113 GBM WXS tumor CPT0285640006 1ac39c4d-4742-4eea-ac1a-074503b7b5a4_wxs_gdc_realn.bam 32633163767 BAM harmonized CPTAC3 e4493502-3425-4529-96af-414aae684e99 c851ea0c3cf38982b87ddc572fa1f855 { 'aliquot_tag': 'REP_7d56a3b1', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } C3N-04113.REP_ede9be20.miRNA-Seq.T C3N-04113 GBM miRNA-Seq tumor CPT0285640009 210702_UNC32-K00270_0289_AHKJ22BBXY_CTTGTA_S10_L005_R1_001.unaln.bam 144320274 BAM unaligned CPTAC3 10503913-3b14-490a-a103-7941a0d25454 dfa01d539dc19fdc75abadb6b3a98984 { 'aliquot_tag': 'REP_ede9be20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Aliquot ' } C3N-04113.REP_ede9be20.miRNA-Seq.T C3N-04113 GBM miRNA-Seq tumor CPT0285640009 210817_UNC31-K00269_0302_AHLCTHBBXY_CTTGTA_S28_L003_R1_001.unaln.bam 94443326 BAM unaligned CPTAC3 8c9c36e0-88de-4c2a-b050-381af131c584 231b766d5cee0439829924fcb672c53c { 'aliquot_tag': 'REP_ede9be20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Aliquot ' } -C3N-04113.REP_ede9be20.RNA-Seq.R1_L008.T C3N-04113 GBM RNA-Seq tumor CPT0285640009 210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R1_001.fastq.gz 3959065989 FASTQ R1_L008 unaligned CPTAC3 69aa2a6b-6027-49f3-8e36-3103637b7cb1 f586ef1488c669bd02c714c1c2d03b51 { 'aliquot_tag': 'REP_ede9be20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Aliquot ' } -C3N-04113.REP_ede9be20.RNA-Seq.R2_L008.T C3N-04113 GBM RNA-Seq tumor CPT0285640009 210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R2_001.fastq.gz 4395049863 FASTQ R2_L008 unaligned CPTAC3 57e66976-7cfd-4dc7-960f-61b01cf53055 73c04986bc63d9b19b1f402db7a33eba { 'aliquot_tag': 'REP_ede9be20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Aliquot ' } -C3N-04113.RNA-Seq.chimeric.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 61995342-294e-42a9-9617-9e9c4434f209.rna_seq.chimeric.gdc_realn.bam 30034866 BAM chimeric harmonized CPTAC3 39ee3002-d298-405f-8d2b-28c494d5fa16 c6aeaf751c275f83d66c2b59ab4b187f { 'aliquot_tag': 'ALQ_62a94b80', 'gdc_sample_type': 'Primary Tumor' } -C3N-04113.RNA-Seq.genomic.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 61995342-294e-42a9-9617-9e9c4434f209.rna_seq.genomic.gdc_realn.bam 7256320457 BAM genomic harmonized CPTAC3 d99876e3-bb14-47a6-b2d3-aea6816f4e0b d67a06ebfae175922cfa861cbee92a06 { 'aliquot_tag': 'ALQ_62a94b80', 'gdc_sample_type': 'Primary Tumor' } -C3N-04113.RNA-Seq.R1_L004.T C3N-04113 GBM RNA-Seq tumor CPT0285620009 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R1_001.fastq.gz 3523637381 FASTQ R1_L004 unaligned CPTAC3 9f0d3283-518d-4cbe-ac56-7f4cff984a77 2f081d269ba4839f78a1af74095b73b1 { 'aliquot_tag': 'ALQ_62a94b80', 'gdc_sample_type': 'Primary Tumor' } -C3N-04113.RNA-Seq.R2_L004.T C3N-04113 GBM RNA-Seq tumor CPT0285620009 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R2_001.fastq.gz 3851534424 FASTQ R2_L004 unaligned CPTAC3 1ce40d45-b6a8-43a9-8aa1-82b4ed1f4a95 99f25205d09e2947c289dc0c34d3a98a { 'aliquot_tag': 'ALQ_62a94b80', 'gdc_sample_type': 'Primary Tumor' } -C3N-04113.RNA-Seq.transcriptome.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 61995342-294e-42a9-9617-9e9c4434f209.rna_seq.transcriptome.gdc_realn.bam 7020351587 BAM transcriptome harmonized CPTAC3 3c444484-2b24-44be-8407-009dd500381b 0ffac080e10102c7c34b9709f9d77492 { 'aliquot_tag': 'ALQ_62a94b80', 'gdc_sample_type': 'Primary Tumor' } +C3N-04113.REP_ede9be20.miRNA-Seq.T.hg38 C3N-04113 GBM miRNA-Seq tumor CPT0285640009 23c43fdb-733e-4927-9051-476c5eebfef6_mirnaseq_gdc_realn.bam 263608949 BAM harmonized CPTAC3 42ecff0b-6285-4019-8aab-be9148e5e484 363721ad955b57d7029f4d847e96c716 { 'aliquot_tag': 'REP_ede9be20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Aliquot ' } +C3N-04113.REP_ede9be20.RNA-Seq.chimeric.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285640009 9bf0796c-24fe-4c86-9947-a4fac2083ed3.rna_seq.chimeric.gdc_realn.bam 281328247 BAM chimeric harmonized CPTAC3 8d629461-d2d2-4c24-aed0-c1fa410e1244 acf8fc97b051def75c9186feb226ac86 { 'aliquot_tag': 'REP_ede9be20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Aliquot ' } +C3N-04113.REP_ede9be20.RNA-Seq.genomic.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285640009 9bf0796c-24fe-4c86-9947-a4fac2083ed3.rna_seq.genomic.gdc_realn.bam 8496679012 BAM genomic harmonized CPTAC3 54eee2ab-eb37-42ac-9240-dd66f9914ee0 dee1f251904178cdc0080719b7c5c22c { 'aliquot_tag': 'REP_ede9be20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Aliquot ' } +C3N-04113.REP_ede9be20.RNA-Seq.R1_L008.T C3N-04113 GBM RNA-Seq tumor CPT0285640009 210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R1_001.fastq.gz 3959065989 FASTQ R1_L008 unaligned CPTAC3 69aa2a6b-6027-49f3-8e36-3103637b7cb1 f586ef1488c669bd02c714c1c2d03b51 { 'aliquot_tag': 'REP_ede9be20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Aliquot ', 'read': 'R1', 'lane': 'L008' } +C3N-04113.REP_ede9be20.RNA-Seq.R2_L008.T C3N-04113 GBM RNA-Seq tumor CPT0285640009 210615_UNC31-K00269_0299_BHLFTYBBXY_AGTACTCC-AACCTGTT_S75_L008_R2_001.fastq.gz 4395049863 FASTQ R2_L008 unaligned CPTAC3 57e66976-7cfd-4dc7-960f-61b01cf53055 73c04986bc63d9b19b1f402db7a33eba { 'aliquot_tag': 'REP_ede9be20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Aliquot ', 'read': 'R2', 'lane': 'L008' } +C3N-04113.REP_ede9be20.RNA-Seq.transcriptome.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285640009 9bf0796c-24fe-4c86-9947-a4fac2083ed3.rna_seq.transcriptome.gdc_realn.bam 11134146453 BAM transcriptome harmonized CPTAC3 4cde65d1-ae2e-48f9-a702-c3e8297ce67f 33c754e614dd098f7de431a68e50082d { 'aliquot_tag': 'REP_ede9be20', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate item: Replacement RNA Aliquot ' } +C3N-04113.RNA-Seq.chimeric.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 c020f721-434a-4463-9044-9b6778864596.rna_seq.chimeric.gdc_realn.bam 30020882 BAM chimeric harmonized CPTAC3 a6b7bb5f-2cb9-4802-a2bf-04b099fe6fd8 bd42281aab61d67a75d9320f54f96516 { 'aliquot_tag': 'ALQ_62a94b80', 'gdc_sample_type': 'Primary Tumor' } +C3N-04113.RNA-Seq.genomic.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 c020f721-434a-4463-9044-9b6778864596.rna_seq.genomic.gdc_realn.bam 7257351546 BAM genomic harmonized CPTAC3 201c17d4-8c5f-4c8c-8fa4-829c9f0dbe0c 35d54c7703ced563e74531de43a3e077 { 'aliquot_tag': 'ALQ_62a94b80', 'gdc_sample_type': 'Primary Tumor' } +C3N-04113.RNA-Seq.R1_L004.T C3N-04113 GBM RNA-Seq tumor CPT0285620009 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R1_001.fastq.gz 3523637381 FASTQ R1_L004 unaligned CPTAC3 9f0d3283-518d-4cbe-ac56-7f4cff984a77 2f081d269ba4839f78a1af74095b73b1 { 'aliquot_tag': 'ALQ_62a94b80', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-04113.RNA-Seq.R2_L004.T C3N-04113 GBM RNA-Seq tumor CPT0285620009 200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R2_001.fastq.gz 3851534424 FASTQ R2_L004 unaligned CPTAC3 1ce40d45-b6a8-43a9-8aa1-82b4ed1f4a95 99f25205d09e2947c289dc0c34d3a98a { 'aliquot_tag': 'ALQ_62a94b80', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-04113.RNA-Seq.transcriptome.T.hg38 C3N-04113 GBM RNA-Seq tumor CPT0285620009 c020f721-434a-4463-9044-9b6778864596.rna_seq.transcriptome.gdc_realn.bam 8067312754 BAM transcriptome harmonized CPTAC3 9cc14cb9-79f2-4ddf-af13-ee6ae1c90e66 ed8209e2f8ce60d78a1b44744aefa540 { 'aliquot_tag': 'ALQ_62a94b80', 'gdc_sample_type': 'Primary Tumor' } C3N-04113.WGS.N C3N-04113 GBM WGS blood_normal CPT0285650002 CPT0285650002.WholeGenome.RP-2158.bam 29591689611 BAM aligned CPTAC3 88491985-2778-4634-b8ed-32a17626ad72 c9b4212007523ca3edf8027e82338068 { 'aliquot_tag': 'ALQ_475b4e18', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04113.WGS.N.hg38 C3N-04113 GBM WGS blood_normal CPT0285650002 48f76814-e8a6-4689-ae08-37a3da4fbccf_wgs_gdc_realn.bam 91183903789 BAM harmonized CPTAC3 8a56868d-6456-4125-bd94-c89e0afdaeff fb7343f4e4926483b47990f66b663bd0 { 'aliquot_tag': 'ALQ_475b4e18', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04113.WGS.T C3N-04113 GBM WGS tumor CPT0285620006 CPT0285620006.WholeGenome.RP-2158.bam 27745088896 BAM aligned CPTAC3 80115334-9ece-488f-b05f-03c26f207441 a09f615b04e741e7315b3f5d8bcfd439 { 'aliquot_tag': 'ALQ_f2165611', 'gdc_sample_type': 'Primary Tumor' } @@ -37125,8 +39503,8 @@ C3N-04119.miRNA-Seq.T C3N-04119 PDA miRNA-Seq tumor CPT0237910010 190712_UNC32-K C3N-04119.miRNA-Seq.T.hg38 C3N-04119 PDA miRNA-Seq tumor CPT0237910010 b0ecf8cb-8488-41b2-9307-9b0fa9e88da3_mirnaseq_gdc_realn.bam 407416981 BAM harmonized CPTAC3 1389286c-e645-49b2-ba4b-b1851dc9a64a 82a005ac6d5555c4246f7fc8bb054687 { 'aliquot_tag': 'ALQ_7e6d071f', 'gdc_sample_type': 'Primary Tumor' } C3N-04119.RNA-Seq.chimeric.T.hg38 C3N-04119 PDA RNA-Seq tumor CPT0237910010 8bf1fa7b-b71f-40b9-8841-cb2e6061ce54.rna_seq.chimeric.gdc_realn.bam 29830003 BAM chimeric harmonized CPTAC3 e197cb7e-a520-4e4f-b77c-25379314cfdf ac005f7bca0d213aea818676d4f273d8 { 'aliquot_tag': 'ALQ_7e6d071f', 'gdc_sample_type': 'Primary Tumor' } C3N-04119.RNA-Seq.genomic.T.hg38 C3N-04119 PDA RNA-Seq tumor CPT0237910010 8bf1fa7b-b71f-40b9-8841-cb2e6061ce54.rna_seq.genomic.gdc_realn.bam 8114440100 BAM genomic harmonized CPTAC3 ca6322ce-f6c8-44d7-bf7a-532bfda010ec b7b6f0f84518f68e82bd2999c9aa4963 { 'aliquot_tag': 'ALQ_7e6d071f', 'gdc_sample_type': 'Primary Tumor' } -C3N-04119.RNA-Seq.R1_L003.T C3N-04119 PDA RNA-Seq tumor CPT0237910010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGGTTATA-CAGTTCCG_S11_L003_R1_001.fastq.gz 3762694137 FASTQ R1_L003 unaligned CPTAC3 b8acb834-0c9a-426c-9a01-e28264df125e 2e519a5b9e715b1fc6d5b4b74af9e81f { 'aliquot_tag': 'ALQ_7e6d071f', 'gdc_sample_type': 'Primary Tumor' } -C3N-04119.RNA-Seq.R2_L003.T C3N-04119 PDA RNA-Seq tumor CPT0237910010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGGTTATA-CAGTTCCG_S11_L003_R2_001.fastq.gz 4189091389 FASTQ R2_L003 unaligned CPTAC3 e56a5b19-b947-4c5a-a590-c6dc5851a6d7 c4a1c7969b5f5b45bf259df399387c32 { 'aliquot_tag': 'ALQ_7e6d071f', 'gdc_sample_type': 'Primary Tumor' } +C3N-04119.RNA-Seq.R1_L003.T C3N-04119 PDA RNA-Seq tumor CPT0237910010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGGTTATA-CAGTTCCG_S11_L003_R1_001.fastq.gz 3762694137 FASTQ R1_L003 unaligned CPTAC3 b8acb834-0c9a-426c-9a01-e28264df125e 2e519a5b9e715b1fc6d5b4b74af9e81f { 'aliquot_tag': 'ALQ_7e6d071f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-04119.RNA-Seq.R2_L003.T C3N-04119 PDA RNA-Seq tumor CPT0237910010 190702_UNC32-K00270_0188_BH7CLJBBXY_AGGTTATA-CAGTTCCG_S11_L003_R2_001.fastq.gz 4189091389 FASTQ R2_L003 unaligned CPTAC3 e56a5b19-b947-4c5a-a590-c6dc5851a6d7 c4a1c7969b5f5b45bf259df399387c32 { 'aliquot_tag': 'ALQ_7e6d071f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-04119.RNA-Seq.transcriptome.T.hg38 C3N-04119 PDA RNA-Seq tumor CPT0237910010 8bf1fa7b-b71f-40b9-8841-cb2e6061ce54.rna_seq.transcriptome.gdc_realn.bam 10657869193 BAM transcriptome harmonized CPTAC3 a3900c02-d514-4b04-a8a3-21cbbb94b9fd 7c07875161970812801d74c9dd23edab { 'aliquot_tag': 'ALQ_7e6d071f', 'gdc_sample_type': 'Primary Tumor' } C3N-04119.WGS.N C3N-04119 PDA WGS blood_normal CPT0237960002 CPT0237960002.WholeGenome.RP-1303.bam 71311817107 BAM aligned CPTAC3 4fdcf32b-0fba-4159-a1ca-a7e911ecdece 01dce3165a605481ab9504e9f67e713d { 'aliquot_tag': 'ALQ_3b588b62', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04119.WGS.N.hg38 C3N-04119 PDA WGS blood_normal CPT0237960002 bfe5b115-f317-44bc-ae72-595d9a0fe7ad_wgs_gdc_realn.bam 103986103989 BAM harmonized CPTAC3 b8610c14-73e9-485b-9f23-36594cc52aaf c25a3e2db71f54b9b01648fe6bef3c17 { 'aliquot_tag': 'ALQ_3b588b62', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37148,12 +39526,12 @@ C3N-04124.miRNA-Seq.T C3N-04124 LSCC miRNA-Seq tumor CPT0237970007 190206_UNC31- C3N-04124.miRNA-Seq.T.hg38 C3N-04124 LSCC miRNA-Seq tumor CPT0237970007 b45e99ad-e3ed-4528-9875-2082923fba8b_mirnaseq_gdc_realn.bam 159372384 BAM harmonized CPTAC3 aeca6b53-14e5-492e-acc6-bfa5d3b9df8d cb472c70813778fb8f5de1d93d4813fe { 'aliquot_tag': 'ALQ_7652565d', 'gdc_sample_type': 'Primary Tumor' } C3N-04124.RNA-Seq.chimeric.A.hg38 C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 49516f62-6147-4d2e-9b83-778d6c376ede.rna_seq.chimeric.gdc_realn.bam 67436184 BAM chimeric harmonized CPTAC3 d27582ad-38bb-4146-a147-766f5c4a72da 850a3905932a7d8c743b64e8ec5b20ce { 'aliquot_tag': 'ALQ_2edac53b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04124.RNA-Seq.chimeric.T.hg38 C3N-04124 LSCC RNA-Seq tumor CPT0237970007 3397bad7-a39c-4de4-84dc-e95a5187a55e.rna_seq.chimeric.gdc_realn.bam 81305870 BAM chimeric harmonized CPTAC3 7576aa30-7371-47ae-ad87-19f799492afa 996a472420f9a6e674e6a479c91539ac { 'aliquot_tag': 'ALQ_7652565d', 'gdc_sample_type': 'Primary Tumor' } -C3N-04124.RNA-Seq.genomic.A.hg38 C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 49516f62-6147-4d2e-9b83-778d6c376ede.rna_seq.genomic.gdc_realn.bam 6279010419 BAM genomic harmonized CPTAC3 56134c2b-101c-43de-8b4e-8bd9edc70569 b3c3168abce27f3033337ad25480b235 { 'aliquot_tag': 'ALQ_2edac53b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04124.RNA-Seq.genomic.T.hg38 C3N-04124 LSCC RNA-Seq tumor CPT0237970007 3397bad7-a39c-4de4-84dc-e95a5187a55e.rna_seq.genomic.gdc_realn.bam 7504027970 BAM genomic harmonized CPTAC3 dc15fe9f-3a40-48ce-b39b-601f0a15378e a680def1c0f0161f65b1a9a2ce7dfde3 { 'aliquot_tag': 'ALQ_7652565d', 'gdc_sample_type': 'Primary Tumor' } -C3N-04124.RNA-Seq.R1_L002.A C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 190219_UNC31-K00269_0194_AH3V53BBXY_CCGTCC_S6_L002_R1_001.fastq.gz 3030908637 FASTQ R1_L002 unaligned CPTAC3 50e5a385-7c1b-407e-adff-0ded34d28d49 1066e63a38510967d3d51d4f566c6d19 { 'aliquot_tag': 'ALQ_2edac53b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04124.RNA-Seq.R1_L003.T C3N-04124 LSCC RNA-Seq tumor CPT0237970007 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L003_R1_001.fastq.gz 3424985645 FASTQ R1_L003 unaligned CPTAC3 e91f5b56-8457-4d6e-9318-67ee1dd7e479 c4eda7fc49ae4728772355cd9751a37b { 'aliquot_tag': 'ALQ_7652565d', 'gdc_sample_type': 'Primary Tumor' } -C3N-04124.RNA-Seq.R2_L002.A C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 190219_UNC31-K00269_0194_AH3V53BBXY_CCGTCC_S6_L002_R2_001.fastq.gz 3048395136 FASTQ R2_L002 unaligned CPTAC3 22917d3e-dcaf-42ad-9fb1-47ea45c06f21 85397e2d07a28f33e74a95eee6501b33 { 'aliquot_tag': 'ALQ_2edac53b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04124.RNA-Seq.R2_L003.T C3N-04124 LSCC RNA-Seq tumor CPT0237970007 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L003_R2_001.fastq.gz 3710808570 FASTQ R2_L003 unaligned CPTAC3 bf6eca83-92e5-4d01-9c37-9251246c999f 87b86c2bdab6bd64e9e29832c4523502 { 'aliquot_tag': 'ALQ_7652565d', 'gdc_sample_type': 'Primary Tumor' } +C3N-04124.RNA-Seq.genomic.A.hg38 C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 49516f62-6147-4d2e-9b83-778d6c376ede.rna_seq.genomic.gdc_realn.bam 6279010419 BAM genomic harmonized CPTAC3 e6e9400d-914e-4766-b909-4e8f081393e6 b3c3168abce27f3033337ad25480b235 { 'aliquot_tag': 'ALQ_2edac53b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04124.RNA-Seq.genomic.T.hg38 C3N-04124 LSCC RNA-Seq tumor CPT0237970007 3397bad7-a39c-4de4-84dc-e95a5187a55e.rna_seq.genomic.gdc_realn.bam 7504027970 BAM genomic harmonized CPTAC3 a802d1fc-df18-4531-9ed6-bcf57db44bd4 a680def1c0f0161f65b1a9a2ce7dfde3 { 'aliquot_tag': 'ALQ_7652565d', 'gdc_sample_type': 'Primary Tumor' } +C3N-04124.RNA-Seq.R1_L002.A C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 190219_UNC31-K00269_0194_AH3V53BBXY_CCGTCC_S6_L002_R1_001.fastq.gz 3030908637 FASTQ R1_L002 unaligned CPTAC3 50e5a385-7c1b-407e-adff-0ded34d28d49 1066e63a38510967d3d51d4f566c6d19 { 'aliquot_tag': 'ALQ_2edac53b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-04124.RNA-Seq.R1_L003.T C3N-04124 LSCC RNA-Seq tumor CPT0237970007 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L003_R1_001.fastq.gz 3424985645 FASTQ R1_L003 unaligned CPTAC3 e91f5b56-8457-4d6e-9318-67ee1dd7e479 c4eda7fc49ae4728772355cd9751a37b { 'aliquot_tag': 'ALQ_7652565d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-04124.RNA-Seq.R2_L002.A C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 190219_UNC31-K00269_0194_AH3V53BBXY_CCGTCC_S6_L002_R2_001.fastq.gz 3048395136 FASTQ R2_L002 unaligned CPTAC3 22917d3e-dcaf-42ad-9fb1-47ea45c06f21 85397e2d07a28f33e74a95eee6501b33 { 'aliquot_tag': 'ALQ_2edac53b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-04124.RNA-Seq.R2_L003.T C3N-04124 LSCC RNA-Seq tumor CPT0237970007 190219_UNC31-K00269_0194_AH3V53BBXY_ACTGAT_S10_L003_R2_001.fastq.gz 3710808570 FASTQ R2_L003 unaligned CPTAC3 bf6eca83-92e5-4d01-9c37-9251246c999f 87b86c2bdab6bd64e9e29832c4523502 { 'aliquot_tag': 'ALQ_7652565d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-04124.RNA-Seq.transcriptome.A.hg38 C3N-04124 LSCC RNA-Seq tissue_normal CPT0237990009 49516f62-6147-4d2e-9b83-778d6c376ede.rna_seq.transcriptome.gdc_realn.bam 7081252380 BAM transcriptome harmonized CPTAC3 72d72512-9419-4c01-9389-809abc704abf df8e5d86d542a36a67a00e91d44e4d4c { 'aliquot_tag': 'ALQ_2edac53b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04124.RNA-Seq.transcriptome.T.hg38 C3N-04124 LSCC RNA-Seq tumor CPT0237970007 3397bad7-a39c-4de4-84dc-e95a5187a55e.rna_seq.transcriptome.gdc_realn.bam 8448184012 BAM transcriptome harmonized CPTAC3 bc05b469-09a6-4030-8f5f-ecb0b4b06b29 1388ffc6ff0042f127283eb4f66a0745 { 'aliquot_tag': 'ALQ_7652565d', 'gdc_sample_type': 'Primary Tumor' } C3N-04124.WGS.N C3N-04124 LSCC WGS blood_normal CPT0238030002 CPT0238030002.WholeGenome.RP-1303.bam 59391008128 BAM aligned CPTAC3 dac2b680-c4e7-4cd6-a0d8-7fc03fa01ede afc9ec51dcb46b46d45aa318dd45912a { 'aliquot_tag': 'ALQ_22ff2533', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37174,16 +39552,16 @@ C3N-04125.miRNA-Seq.A C3N-04125 LSCC miRNA-Seq tissue_normal CPT0330820009 20120 C3N-04125.miRNA-Seq.A.hg38 C3N-04125 LSCC miRNA-Seq tissue_normal CPT0330820009 abf649e2-0f4c-42f4-a964-a35cb20be110_mirnaseq_gdc_realn.bam 259225378 BAM harmonized CPTAC3 765ab5e6-a4e3-4744-adf9-7e4ceb9d7776 0d721493bc2e8c869a379a707008723b { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04125.miRNA-Seq.T C3N-04125 LSCC miRNA-Seq tumor CPT0330800010 201209_UNC32-K00270_0265_AHJ55WBBXY_AGTTCC_S25_L007_R1_001.unaln.bam 346270654 BAM unaligned CPTAC3 cf729db9-03ae-4db8-a5c9-a9468f1fb0bd 69d9dac7d93933b53155578f2eaf0949 { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor' } C3N-04125.miRNA-Seq.T.hg38 C3N-04125 LSCC miRNA-Seq tumor CPT0330800010 ca62a282-1699-4bcb-8b96-35a13cc1a2c6_mirnaseq_gdc_realn.bam 382619328 BAM harmonized CPTAC3 1917b218-3fad-4250-88a4-ae9f669ca623 190bc741176fc58870974dd7ae0c619b { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor' } -C3N-04125.RNA-Seq.chimeric.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 8af919ed-8f2e-41b9-9f60-27306d1b6a2f.rna_seq.chimeric.gdc_realn.bam 242803720 BAM chimeric harmonized CPTAC3 a2e9d4c8-3cd4-4304-9cf1-36e6dc194a49 1a8bcf337772843946ad96535d2eb965 { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04125.RNA-Seq.chimeric.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 ae47cd36-85a9-485a-8d2e-e3667997d9fe.rna_seq.chimeric.gdc_realn.bam 271683582 BAM chimeric harmonized CPTAC3 332c1b44-90a3-4f82-bf39-5fd1305c0523 5ad12880136314b81dceaa6d8db7e727 { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor' } -C3N-04125.RNA-Seq.genomic.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 8af919ed-8f2e-41b9-9f60-27306d1b6a2f.rna_seq.genomic.gdc_realn.bam 6241771700 BAM genomic harmonized CPTAC3 f541cf0b-f423-40c8-8d6d-77aff25e6c58 287759436a6df1f2d77df15399487104 { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04125.RNA-Seq.genomic.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 ae47cd36-85a9-485a-8d2e-e3667997d9fe.rna_seq.genomic.gdc_realn.bam 7567662699 BAM genomic harmonized CPTAC3 213254fc-5103-4912-8285-a63327e6c434 26512dabd2b4ca590ac2c95afa0d7a65 { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor' } -C3N-04125.RNA-Seq.R1_L003.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R1_001.fastq.gz 3093237294 FASTQ R1_L003 unaligned CPTAC3 702ac9ca-7e6e-48ee-a162-13536b0378b6 8c682323deee4e1105e34700b9686249 { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04125.RNA-Seq.R1_L007.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R1_001.fastq.gz 3905362326 FASTQ R1_L007 unaligned CPTAC3 4f5333d2-f5e8-4238-93cc-a43a1d94750e 65ad4f909f5752d94e987520e4809bea { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor' } -C3N-04125.RNA-Seq.R2_L003.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 3271914743 FASTQ R2_L003 unaligned CPTAC3 2fdfef3a-5922-4158-81fc-d9c462eb95e6 2a98d09075e8e73f0a532c0456946567 { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04125.RNA-Seq.R2_L007.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R2_001.fastq.gz 4220282539 FASTQ R2_L007 unaligned CPTAC3 e72caf0c-fb26-4d24-b284-a15ed7df1ed0 231c9af82aeb330b50ede11dfa74e3ca { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor' } -C3N-04125.RNA-Seq.transcriptome.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 8af919ed-8f2e-41b9-9f60-27306d1b6a2f.rna_seq.transcriptome.gdc_realn.bam 5927931378 BAM transcriptome harmonized CPTAC3 6cb73237-44e1-4d73-b4ae-a9e7ce0e505d c070f78fe65a1abb68b2accc364beb7f { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04125.RNA-Seq.transcriptome.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 ae47cd36-85a9-485a-8d2e-e3667997d9fe.rna_seq.transcriptome.gdc_realn.bam 12201017582 BAM transcriptome harmonized CPTAC3 61fe2b70-a720-426a-8fa5-29a2266fd619 903fe3ea5e6bc267002c4c7ee26474c1 { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor' } +C3N-04125.RNA-Seq.chimeric.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 b0539cce-34f7-40e6-a9f3-d9efaa677fb7.rna_seq.chimeric.gdc_realn.bam 242779375 BAM chimeric harmonized CPTAC3 d16dbce1-88ba-4580-a1eb-14e6ef745bbe d836d77485f4e13f47cd9fb259eb834a { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04125.RNA-Seq.chimeric.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 f1e92aa1-56c0-41cb-b025-dff373c5b2bc.rna_seq.chimeric.gdc_realn.bam 271729178 BAM chimeric harmonized CPTAC3 de83dfd7-65c4-4aa3-b2c2-09d0de84f91e ab662e7dc195ba5dd3a75a588901469a { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor' } +C3N-04125.RNA-Seq.genomic.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 b0539cce-34f7-40e6-a9f3-d9efaa677fb7.rna_seq.genomic.gdc_realn.bam 6246682953 BAM genomic harmonized CPTAC3 a2cf4d60-0d3c-4640-91f8-10015599cd24 709d48e3225ed7dffc911189d031ef1b { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04125.RNA-Seq.genomic.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 f1e92aa1-56c0-41cb-b025-dff373c5b2bc.rna_seq.genomic.gdc_realn.bam 7579152848 BAM genomic harmonized CPTAC3 40057ec1-87db-4e6c-af78-728a0191957f 643b8988323d62c8c6872f55f2f64959 { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor' } +C3N-04125.RNA-Seq.R1_L003.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R1_001.fastq.gz 3093237294 FASTQ R1_L003 unaligned CPTAC3 702ac9ca-7e6e-48ee-a162-13536b0378b6 8c682323deee4e1105e34700b9686249 { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-04125.RNA-Seq.R1_L007.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R1_001.fastq.gz 3905362326 FASTQ R1_L007 unaligned CPTAC3 4f5333d2-f5e8-4238-93cc-a43a1d94750e 65ad4f909f5752d94e987520e4809bea { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-04125.RNA-Seq.R2_L003.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 3271914743 FASTQ R2_L003 unaligned CPTAC3 2fdfef3a-5922-4158-81fc-d9c462eb95e6 2a98d09075e8e73f0a532c0456946567 { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-04125.RNA-Seq.R2_L007.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R2_001.fastq.gz 4220282539 FASTQ R2_L007 unaligned CPTAC3 e72caf0c-fb26-4d24-b284-a15ed7df1ed0 231c9af82aeb330b50ede11dfa74e3ca { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-04125.RNA-Seq.transcriptome.A.hg38 C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 b0539cce-34f7-40e6-a9f3-d9efaa677fb7.rna_seq.transcriptome.gdc_realn.bam 6708889573 BAM transcriptome harmonized CPTAC3 6fe2941b-a2de-42f3-a59f-d6b623a78d94 579d5411c6be779d143171a3e67d90cf { 'aliquot_tag': 'ALQ_408a0d42', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04125.RNA-Seq.transcriptome.T.hg38 C3N-04125 LSCC RNA-Seq tumor CPT0330800010 f1e92aa1-56c0-41cb-b025-dff373c5b2bc.rna_seq.transcriptome.gdc_realn.bam 13733886163 BAM transcriptome harmonized CPTAC3 74d87c9a-4519-45b2-88cf-daea7d6dbd17 258737f25c5563276a27191845b78837 { 'aliquot_tag': 'ALQ_5a8dd7c7', 'gdc_sample_type': 'Primary Tumor' } C3N-04125.WGS.N C3N-04125 LSCC WGS blood_normal CPT0330890002 CPT0330890002.WholeGenome.RP-2158.bam 23494158499 BAM aligned CPTAC3 9090021d-c5a0-4767-bfbb-cbe66143f9a5 45f2e2d633cd65ea929e79119aeff56b { 'aliquot_tag': 'ALQ_a088e5db', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04125.WGS.N.hg38 C3N-04125 LSCC WGS blood_normal CPT0330890002 f7e61ace-2364-4c15-922a-027505c69855_wgs_gdc_realn.bam 69948689386 BAM harmonized CPTAC3 df89fa76-416d-4b99-923e-f200c4e7d39b a7adb3d0741e81576dab67c7c75443b1 { 'aliquot_tag': 'ALQ_a088e5db', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04125.WGS.T C3N-04125 LSCC WGS tumor CPT0330800007 CPT0330800007.WholeGenome.RP-2158.bam 22713160615 BAM aligned CPTAC3 7c9b9f19-1419-4c85-99ce-14da8c77a074 54121c197ba837f0a22c892f6c324dc5 { 'aliquot_tag': 'ALQ_ddf27325', 'gdc_sample_type': 'Primary Tumor' } @@ -37199,9 +39577,9 @@ C3N-04126.MethArray.Red.T C3N-04126 PDA Methylation Array tumor CPT0238040008 20 C3N-04126.miRNA-Seq.T C3N-04126 PDA miRNA-Seq tumor CPT0238040011 190712_UNC32-K00270_0192_BH7HL3BBXY_CTAGCT_S14_L004_R1_001.unaln.bam 262982977 BAM unaligned CPTAC3 45a79f8a-05be-4e50-b742-a1894c6a19ab 298792ef813e5cb355e8e0b98c7f0d63 { 'aliquot_tag': 'ALQ_10cd99d8', 'gdc_sample_type': 'Primary Tumor' } C3N-04126.miRNA-Seq.T.hg38 C3N-04126 PDA miRNA-Seq tumor CPT0238040011 ea3d05c5-d103-44f7-bfbf-1b204471753d_mirnaseq_gdc_realn.bam 296371313 BAM harmonized CPTAC3 60a39e27-347b-4d29-83ad-89235bd5b4b0 970cd2bd1a755cbcabe4557544b52d79 { 'aliquot_tag': 'ALQ_10cd99d8', 'gdc_sample_type': 'Primary Tumor' } C3N-04126.RNA-Seq.chimeric.T.hg38 C3N-04126 PDA RNA-Seq tumor CPT0238040011 6d3731d0-8c2c-4ba7-a477-720cebcac57b.rna_seq.chimeric.gdc_realn.bam 42726772 BAM chimeric harmonized CPTAC3 4fa21603-a840-4565-a14d-99d765def56c c9163ea880673a5151f8cfeeabf6e7ea { 'aliquot_tag': 'ALQ_10cd99d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-04126.RNA-Seq.genomic.T.hg38 C3N-04126 PDA RNA-Seq tumor CPT0238040011 6d3731d0-8c2c-4ba7-a477-720cebcac57b.rna_seq.genomic.gdc_realn.bam 10206979343 BAM genomic harmonized CPTAC3 d27a0700-673e-4461-9b9e-86506c8af419 340287636b43103fed0ead7fbcc5e30b { 'aliquot_tag': 'ALQ_10cd99d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-04126.RNA-Seq.R1_L003.T C3N-04126 PDA RNA-Seq tumor CPT0238040011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAACCGCG-TGACCTTA_S10_L003_R1_001.fastq.gz 4684069459 FASTQ R1_L003 unaligned CPTAC3 35bc239c-6aff-408b-afa3-dcebcb5e3f05 220dd64d49f7e5ecc78dc03b31d29be3 { 'aliquot_tag': 'ALQ_10cd99d8', 'gdc_sample_type': 'Primary Tumor' } -C3N-04126.RNA-Seq.R2_L003.T C3N-04126 PDA RNA-Seq tumor CPT0238040011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAACCGCG-TGACCTTA_S10_L003_R2_001.fastq.gz 5065805986 FASTQ R2_L003 unaligned CPTAC3 0c465402-f38f-49cb-9c73-bcc141ded2cf 9fc41b3323ea7f349a82592f9400e661 { 'aliquot_tag': 'ALQ_10cd99d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-04126.RNA-Seq.genomic.T.hg38 C3N-04126 PDA RNA-Seq tumor CPT0238040011 6d3731d0-8c2c-4ba7-a477-720cebcac57b.rna_seq.genomic.gdc_realn.bam 10206979343 BAM genomic harmonized CPTAC3 ffaa3ec7-af96-48af-ae09-27e22c35b21f 340287636b43103fed0ead7fbcc5e30b { 'aliquot_tag': 'ALQ_10cd99d8', 'gdc_sample_type': 'Primary Tumor' } +C3N-04126.RNA-Seq.R1_L003.T C3N-04126 PDA RNA-Seq tumor CPT0238040011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAACCGCG-TGACCTTA_S10_L003_R1_001.fastq.gz 4684069459 FASTQ R1_L003 unaligned CPTAC3 35bc239c-6aff-408b-afa3-dcebcb5e3f05 220dd64d49f7e5ecc78dc03b31d29be3 { 'aliquot_tag': 'ALQ_10cd99d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-04126.RNA-Seq.R2_L003.T C3N-04126 PDA RNA-Seq tumor CPT0238040011 190702_UNC32-K00270_0188_BH7CLJBBXY_GAACCGCG-TGACCTTA_S10_L003_R2_001.fastq.gz 5065805986 FASTQ R2_L003 unaligned CPTAC3 0c465402-f38f-49cb-9c73-bcc141ded2cf 9fc41b3323ea7f349a82592f9400e661 { 'aliquot_tag': 'ALQ_10cd99d8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-04126.RNA-Seq.transcriptome.T.hg38 C3N-04126 PDA RNA-Seq tumor CPT0238040011 6d3731d0-8c2c-4ba7-a477-720cebcac57b.rna_seq.transcriptome.gdc_realn.bam 11749325788 BAM transcriptome harmonized CPTAC3 829037c3-a4d4-4706-8677-1269b564f35a 2a77b72852cca541b45668f1f8b9212f { 'aliquot_tag': 'ALQ_10cd99d8', 'gdc_sample_type': 'Primary Tumor' } C3N-04126.WGS.N C3N-04126 PDA WGS blood_normal CPT0238100002 CPT0238100002.WholeGenome.RP-1303.bam 60905500633 BAM aligned CPTAC3 c323fa59-8454-48c4-bdb6-dec49fee1680 19a83a083b9db1f7ffc53292b7800691 { 'aliquot_tag': 'ALQ_ae038c46', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04126.WGS.N.hg38 C3N-04126 PDA WGS blood_normal CPT0238100002 7ca1a7f0-7de3-4ac6-9b56-af840d83d463_wgs_gdc_realn.bam 88803296322 BAM harmonized CPTAC3 e6899c13-9355-4f15-92c0-af79b70fcdf6 d341705ce3287295eebc4ea031a79695 { 'aliquot_tag': 'ALQ_ae038c46', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37221,12 +39599,12 @@ C3N-04127.miRNA-Seq.T C3N-04127 LSCC miRNA-Seq tumor CPT0238110007 190206_UNC31- C3N-04127.miRNA-Seq.T.hg38 C3N-04127 LSCC miRNA-Seq tumor CPT0238110007 befe36fc-543d-445b-af9d-e4794497aa2e_mirnaseq_gdc_realn.bam 162460971 BAM harmonized CPTAC3 2c2319e5-118f-4cac-93f3-c6a07ecfeef8 8ded7aca8bfb74ab71c577fba45f784f { 'aliquot_tag': 'ALQ_e3095179', 'gdc_sample_type': 'Primary Tumor' } C3N-04127.RNA-Seq.chimeric.A.hg38 C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 a9d9411a-9932-44f4-9fe4-86e1f6086595.rna_seq.chimeric.gdc_realn.bam 79246141 BAM chimeric harmonized CPTAC3 4a02f239-ea77-4e05-8595-d183bd0889b7 b83392cbfad9d64d6301a85be7c2770c { 'aliquot_tag': 'ALQ_7e712f1e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04127.RNA-Seq.chimeric.T.hg38 C3N-04127 LSCC RNA-Seq tumor CPT0238110007 c2575d99-556e-4efb-9e14-4f387a043607.rna_seq.chimeric.gdc_realn.bam 72920468 BAM chimeric harmonized CPTAC3 39e2337b-976c-4e46-a264-5cc90f36ed78 4cb53e57fab4110552396a6c6962b233 { 'aliquot_tag': 'ALQ_e3095179', 'gdc_sample_type': 'Primary Tumor' } -C3N-04127.RNA-Seq.genomic.A.hg38 C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 a9d9411a-9932-44f4-9fe4-86e1f6086595.rna_seq.genomic.gdc_realn.bam 9910411638 BAM genomic harmonized CPTAC3 0bea29dc-b689-41ee-808d-08e260cd47f2 609a068a444dddfd9d769c8efd5af217 { 'aliquot_tag': 'ALQ_7e712f1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04127.RNA-Seq.genomic.T.hg38 C3N-04127 LSCC RNA-Seq tumor CPT0238110007 c2575d99-556e-4efb-9e14-4f387a043607.rna_seq.genomic.gdc_realn.bam 7550047180 BAM genomic harmonized CPTAC3 5d82be35-89e3-4900-b88b-5ec791b6982c 2a8de2c76714270a86022bf7ea233627 { 'aliquot_tag': 'ALQ_e3095179', 'gdc_sample_type': 'Primary Tumor' } -C3N-04127.RNA-Seq.R1_L003.T C3N-04127 LSCC RNA-Seq tumor CPT0238110007 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L003_R1_001.fastq.gz 3356194614 FASTQ R1_L003 unaligned CPTAC3 6d3b1cb1-6867-4e56-9338-2ac8c1bf659d 0afe2bf4ece2da589e3643fd1436b9d0 { 'aliquot_tag': 'ALQ_e3095179', 'gdc_sample_type': 'Primary Tumor' } -C3N-04127.RNA-Seq.R1_L007.A C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L007_R1_001.fastq.gz 4534378721 FASTQ R1_L007 unaligned CPTAC3 ae07e32e-d225-422d-859a-71d95ae2ad13 832505c37c171e21e178309ced605c69 { 'aliquot_tag': 'ALQ_7e712f1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04127.RNA-Seq.R2_L003.T C3N-04127 LSCC RNA-Seq tumor CPT0238110007 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L003_R2_001.fastq.gz 3700840039 FASTQ R2_L003 unaligned CPTAC3 3ab3cd4e-9ade-47ac-9a1b-242050f0d731 cb65a5d2de89878f8ca154bb9709f6b6 { 'aliquot_tag': 'ALQ_e3095179', 'gdc_sample_type': 'Primary Tumor' } -C3N-04127.RNA-Seq.R2_L007.A C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L007_R2_001.fastq.gz 5236762817 FASTQ R2_L007 unaligned CPTAC3 9c5814c9-8297-4011-9036-c8f311ff7c0a c6e642eb2bd11615849448c811f2ce65 { 'aliquot_tag': 'ALQ_7e712f1e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04127.RNA-Seq.genomic.A.hg38 C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 a9d9411a-9932-44f4-9fe4-86e1f6086595.rna_seq.genomic.gdc_realn.bam 9910411638 BAM genomic harmonized CPTAC3 e2d258fd-a677-48d2-b1d0-c508f82450c6 609a068a444dddfd9d769c8efd5af217 { 'aliquot_tag': 'ALQ_7e712f1e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04127.RNA-Seq.genomic.T.hg38 C3N-04127 LSCC RNA-Seq tumor CPT0238110007 c2575d99-556e-4efb-9e14-4f387a043607.rna_seq.genomic.gdc_realn.bam 7550047180 BAM genomic harmonized CPTAC3 9cf1bc14-fb91-41c5-bbc1-847d72211a08 2a8de2c76714270a86022bf7ea233627 { 'aliquot_tag': 'ALQ_e3095179', 'gdc_sample_type': 'Primary Tumor' } +C3N-04127.RNA-Seq.R1_L003.T C3N-04127 LSCC RNA-Seq tumor CPT0238110007 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L003_R1_001.fastq.gz 3356194614 FASTQ R1_L003 unaligned CPTAC3 6d3b1cb1-6867-4e56-9338-2ac8c1bf659d 0afe2bf4ece2da589e3643fd1436b9d0 { 'aliquot_tag': 'ALQ_e3095179', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-04127.RNA-Seq.R1_L007.A C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L007_R1_001.fastq.gz 4534378721 FASTQ R1_L007 unaligned CPTAC3 ae07e32e-d225-422d-859a-71d95ae2ad13 832505c37c171e21e178309ced605c69 { 'aliquot_tag': 'ALQ_7e712f1e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L007' } +C3N-04127.RNA-Seq.R2_L003.T C3N-04127 LSCC RNA-Seq tumor CPT0238110007 190219_UNC31-K00269_0194_AH3V53BBXY_ATTCCT_S12_L003_R2_001.fastq.gz 3700840039 FASTQ R2_L003 unaligned CPTAC3 3ab3cd4e-9ade-47ac-9a1b-242050f0d731 cb65a5d2de89878f8ca154bb9709f6b6 { 'aliquot_tag': 'ALQ_e3095179', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-04127.RNA-Seq.R2_L007.A C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 190208_UNC32-K00270_0146_BH3V2WBBXY_GTCCGC_S4_L007_R2_001.fastq.gz 5236762817 FASTQ R2_L007 unaligned CPTAC3 9c5814c9-8297-4011-9036-c8f311ff7c0a c6e642eb2bd11615849448c811f2ce65 { 'aliquot_tag': 'ALQ_7e712f1e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L007' } C3N-04127.RNA-Seq.transcriptome.A.hg38 C3N-04127 LSCC RNA-Seq tissue_normal CPT0238130009 a9d9411a-9932-44f4-9fe4-86e1f6086595.rna_seq.transcriptome.gdc_realn.bam 11293387427 BAM transcriptome harmonized CPTAC3 a52545de-5467-4e7b-ac8f-aee523eacf38 96cd6d99c09e30ccf978f05aa1a30c94 { 'aliquot_tag': 'ALQ_7e712f1e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04127.RNA-Seq.transcriptome.T.hg38 C3N-04127 LSCC RNA-Seq tumor CPT0238110007 c2575d99-556e-4efb-9e14-4f387a043607.rna_seq.transcriptome.gdc_realn.bam 9999790850 BAM transcriptome harmonized CPTAC3 3f03960e-6fd6-44a1-a1bb-4a5efec21803 0a51af3bc88c92921633d0ee4ebcba47 { 'aliquot_tag': 'ALQ_e3095179', 'gdc_sample_type': 'Primary Tumor' } C3N-04127.WGS.N C3N-04127 LSCC WGS blood_normal CPT0238170002 CPT0238170002.WholeGenome.RP-1303.bam 54195489488 BAM aligned CPTAC3 4dd0fcef-d27e-4ac1-b947-88adfa1581db 10251931ce9b0acb55541e05009b03cb { 'aliquot_tag': 'ALQ_1c235056', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37245,16 +39623,16 @@ C3N-04138.miRNA-Seq.A C3N-04138 LSCC miRNA-Seq tissue_normal CPT0331020006 20120 C3N-04138.miRNA-Seq.A.hg38 C3N-04138 LSCC miRNA-Seq tissue_normal CPT0331020006 ec1541d4-bfe8-466b-9b48-ee5e6230a261_mirnaseq_gdc_realn.bam 362181419 BAM harmonized CPTAC3 df46f43e-24b2-4a04-b799-408dce3ec502 8feb65c5a64055c585efb38db38bb756 { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04138.miRNA-Seq.T C3N-04138 LSCC miRNA-Seq tumor CPT0331000010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGTCA_S26_L007_R1_001.unaln.bam 265870736 BAM unaligned CPTAC3 c395220d-eea6-4cf2-ac5e-247384b3e3aa e3ec0c5d350fe3bda4f994ffae358aa7 { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor' } C3N-04138.miRNA-Seq.T.hg38 C3N-04138 LSCC miRNA-Seq tumor CPT0331000010 917361fd-a3b9-48ec-a961-72cf33c124b9_mirnaseq_gdc_realn.bam 282197753 BAM harmonized CPTAC3 f24f22ab-b573-4ff4-aa46-166513346b75 07bfd2e3a337bc113962d98edb0ed27d { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04138.RNA-Seq.chimeric.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 61a023d2-6580-4d1c-a81b-caa916cc9e58.rna_seq.chimeric.gdc_realn.bam 129316320 BAM chimeric harmonized CPTAC3 e637ab16-2eaf-48b8-b816-a413fe0350b1 9dd4bd37dc248dd16e6f63504d7d18ef { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04138.RNA-Seq.chimeric.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 121ac9e0-95d7-432a-a6c5-5685a17fcc61.rna_seq.chimeric.gdc_realn.bam 267447119 BAM chimeric harmonized CPTAC3 932a29f6-12dc-48b1-8ac4-e34e250e6824 02ab667d861a3c5be4a94e531b04045e { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04138.RNA-Seq.genomic.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 61a023d2-6580-4d1c-a81b-caa916cc9e58.rna_seq.genomic.gdc_realn.bam 5777184391 BAM genomic harmonized CPTAC3 121859ca-335a-4a5c-a5fa-efd928baed24 3fbb13898b75bf0ad9b4fe7afe3ff8ba { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04138.RNA-Seq.genomic.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 121ac9e0-95d7-432a-a6c5-5685a17fcc61.rna_seq.genomic.gdc_realn.bam 8051045416 BAM genomic harmonized CPTAC3 31089825-221a-432f-8dee-1f60057dfaf6 28b5b4c6dc0523c1e104db2e5ad63b6e { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04138.RNA-Seq.R1_L003.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R1_001.fastq.gz 2765503985 FASTQ R1_L003 unaligned CPTAC3 3e115e28-d175-4c14-ae40-3ccba22fab84 4c71f58330c7f6a52202857c7e0dc5be { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04138.RNA-Seq.R1_L007.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R1_001.fastq.gz 4031983308 FASTQ R1_L007 unaligned CPTAC3 3fc427a9-70d7-4182-a316-f528f080ccd8 ad91378fc02c95b5ab020ae3ca55e853 { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04138.RNA-Seq.R2_L003.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R2_001.fastq.gz 2970136492 FASTQ R2_L003 unaligned CPTAC3 3b79257c-871d-4e0e-99e7-3024bc78d0e1 cf1c9299608146bd271bcbd02438864f { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04138.RNA-Seq.R2_L007.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R2_001.fastq.gz 4378549451 FASTQ R2_L007 unaligned CPTAC3 12eebe5b-3249-49a2-9394-4cb8c0151e21 57abdf95bfe917a4a985a0ae9e3f2131 { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04138.RNA-Seq.transcriptome.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 61a023d2-6580-4d1c-a81b-caa916cc9e58.rna_seq.transcriptome.gdc_realn.bam 5500332465 BAM transcriptome harmonized CPTAC3 c017aba5-af7a-443d-8744-a9d136ae18db 9558453af0cb76d921f87c9b4c826628 { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04138.RNA-Seq.transcriptome.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 121ac9e0-95d7-432a-a6c5-5685a17fcc61.rna_seq.transcriptome.gdc_realn.bam 10946588776 BAM transcriptome harmonized CPTAC3 2401327f-e9ec-4627-8245-4b2d8ace0ab1 76c05f6e93ea635cbfe0ae414874c916 { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04138.RNA-Seq.chimeric.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 f7b4997e-c9f7-48e7-80b3-aa333c37fe9d.rna_seq.chimeric.gdc_realn.bam 129300260 BAM chimeric harmonized CPTAC3 82525903-dd8c-4251-858a-02371efb07e5 f419f3889048dbbd8869904bcc7f55fa { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04138.RNA-Seq.chimeric.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 498c8699-b0e4-44a9-8b07-a626f7e54b93.rna_seq.chimeric.gdc_realn.bam 267487878 BAM chimeric harmonized CPTAC3 30be77c4-0c0d-4a89-8a39-674af1482398 e0edcf79a6ec5625f2edc988656a0cdf { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04138.RNA-Seq.genomic.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 f7b4997e-c9f7-48e7-80b3-aa333c37fe9d.rna_seq.genomic.gdc_realn.bam 5782022234 BAM genomic harmonized CPTAC3 fd251ce0-a9c6-4a9a-a080-c3cb0bc14e1e 69781f4dc4f9e2e2ac3baeffbba5b2f6 { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04138.RNA-Seq.genomic.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 498c8699-b0e4-44a9-8b07-a626f7e54b93.rna_seq.genomic.gdc_realn.bam 8061105047 BAM genomic harmonized CPTAC3 48326000-1d18-48c1-ba2d-f42ef09bda00 23cc31b0616b051288793278a2a73569 { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04138.RNA-Seq.R1_L003.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R1_001.fastq.gz 2765503985 FASTQ R1_L003 unaligned CPTAC3 3e115e28-d175-4c14-ae40-3ccba22fab84 4c71f58330c7f6a52202857c7e0dc5be { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-04138.RNA-Seq.R1_L007.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R1_001.fastq.gz 4031983308 FASTQ R1_L007 unaligned CPTAC3 3fc427a9-70d7-4182-a316-f528f080ccd8 ad91378fc02c95b5ab020ae3ca55e853 { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-04138.RNA-Seq.R2_L003.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R2_001.fastq.gz 2970136492 FASTQ R2_L003 unaligned CPTAC3 3b79257c-871d-4e0e-99e7-3024bc78d0e1 cf1c9299608146bd271bcbd02438864f { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-04138.RNA-Seq.R2_L007.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R2_001.fastq.gz 4378549451 FASTQ R2_L007 unaligned CPTAC3 12eebe5b-3249-49a2-9394-4cb8c0151e21 57abdf95bfe917a4a985a0ae9e3f2131 { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-04138.RNA-Seq.transcriptome.A.hg38 C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 f7b4997e-c9f7-48e7-80b3-aa333c37fe9d.rna_seq.transcriptome.gdc_realn.bam 6237704256 BAM transcriptome harmonized CPTAC3 397c388b-557a-41e0-8b49-c99fbfea0f69 6101427e637c22bc1ee1e3bb9699e126 { 'aliquot_tag': 'ALQ_9a11990a', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04138.RNA-Seq.transcriptome.T.hg38 C3N-04138 LSCC RNA-Seq tumor CPT0331000010 498c8699-b0e4-44a9-8b07-a626f7e54b93.rna_seq.transcriptome.gdc_realn.bam 12309782023 BAM transcriptome harmonized CPTAC3 205fd9fa-671b-4a14-818f-d0f3a09562c2 3f63d294e4aff705c2b402546af0ce6c { 'aliquot_tag': 'ALQ_10a95e1e', 'gdc_sample_type': 'Primary Tumor' } C3N-04138.WGS.N C3N-04138 LSCC WGS blood_normal CPT0331090002 CPT0331090002.WholeGenome.RP-2158.bam 21805976070 BAM aligned CPTAC3 dbc67567-3103-4284-80aa-b3f6bf3b0a65 811d1c1d9ef54ed3d57705133760d7ba { 'aliquot_tag': 'ALQ_eaac6c02', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04138.WGS.N.hg38 C3N-04138 LSCC WGS blood_normal CPT0331090002 3ad5fe5b-a89a-459a-8e95-3d324e6018b1_wgs_gdc_realn.bam 64174428871 BAM harmonized CPTAC3 f3c3ad85-139b-44ab-993e-71819c0e8aed ed65c0ceecc3a03702cf2a464072171a { 'aliquot_tag': 'ALQ_eaac6c02', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04138.WGS.T C3N-04138 LSCC WGS tumor CPT0331000007 CPT0331000007.WholeGenome.RP-2158.bam 27914789343 BAM aligned CPTAC3 ef545b12-556c-4747-9567-1d471b7315f1 67d2d120b6842abc306d1d23010af99e { 'aliquot_tag': 'ALQ_97d6fafc', 'gdc_sample_type': 'Primary Tumor' } @@ -37263,8 +39641,11 @@ C3N-04138.WXS.N C3N-04138 LSCC WXS blood_normal CPT0331090002 CPT0331090002.Whol C3N-04138.WXS.N.hg38 C3N-04138 LSCC WXS blood_normal CPT0331090002 3ad5fe5b-a89a-459a-8e95-3d324e6018b1_wxs_gdc_realn.bam 40369608923 BAM harmonized CPTAC3 fb6ee426-38fc-461a-b08f-dc6ba3fc6d53 a54f7f11a203362d83a50770cd69383c { 'aliquot_tag': 'ALQ_eaac6c02', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04138.WXS.T C3N-04138 LSCC WXS tumor CPT0331000007 CPT0331000007.WholeExome.RP-1303.bam 19694203636 BAM aligned CPTAC3 4d3904df-d98f-425b-902d-1d83fd6e3a1b 2083839e8ab1cbcbaa3b0c49bf5f9b9b { 'aliquot_tag': 'ALQ_97d6fafc', 'gdc_sample_type': 'Primary Tumor' } C3N-04138.WXS.T.hg38 C3N-04138 LSCC WXS tumor CPT0331000007 643307d3-9e81-4b95-9874-c43004fd1203_wxs_gdc_realn.bam 27641153087 BAM harmonized CPTAC3 4cc82681-a96f-4cf5-88fb-17fe9301efc5 6f299b925e22a8609014f10e83f0319a { 'aliquot_tag': 'ALQ_97d6fafc', 'gdc_sample_type': 'Primary Tumor' } -C3N-04151.RNA-Seq.R1_.T C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 20210714_P1_D4_WB7988_plate1_S40_R1_001.fastq.gz 5881869402 FASTQ R1_ unaligned CPTAC3 1d703603-8fb9-4fa5-b995-6c362b4c63bd 931204979bdfc0a588e7ba7a7e0de572 { 'aliquot_tag': 'ALQ_2d5ce63e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04151.RNA-Seq.R2_.T C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 20210714_P1_D4_WB7988_plate1_S40_R2_001.fastq.gz 6165305786 FASTQ R2_ unaligned CPTAC3 eda55b2a-4104-4793-8da2-e79b4826e144 c31b4d4cf95b297bf11644d2cca7f729 { 'aliquot_tag': 'ALQ_2d5ce63e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04151.RNA-Seq.chimeric.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.chimeric.gdc_realn.bam 201299357 BAM chimeric harmonized CPTAC3 10305f60-0348-4c62-a527-ec17f842558d 33125b511db82795aab443c8deff3083 { 'aliquot_tag': 'ALQ_2d5ce63e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04151.RNA-Seq.genomic.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.genomic.gdc_realn.bam 9613176271 BAM genomic harmonized CPTAC3 beeb8b6e-fa5f-4470-9b67-725b4831f61b 43a7a584c0ff42fed62b31ea091660f1 { 'aliquot_tag': 'ALQ_2d5ce63e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04151.RNA-Seq.T C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 20210714_P1_D4_WB7988_plate1_S40_R1_001.fastq.gz 5881869402 FASTQ unaligned CPTAC3 1d703603-8fb9-4fa5-b995-6c362b4c63bd 931204979bdfc0a588e7ba7a7e0de572 +C3N-04151.RNA-Seq.T C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 20210714_P1_D4_WB7988_plate1_S40_R2_001.fastq.gz 6165305786 FASTQ unaligned CPTAC3 eda55b2a-4104-4793-8da2-e79b4826e144 c31b4d4cf95b297bf11644d2cca7f729 +C3N-04151.RNA-Seq.transcriptome.T.hg38 C3N-04151 HNSCC RNA-Seq tumor CPT0249280001 b1696fe8-2f44-431c-9e61-76132774b521.rna_seq.transcriptome.gdc_realn.bam 6174806206 BAM transcriptome harmonized CPTAC3 f408c514-33e0-4856-a57d-abefce025e52 938ce0ba9b7734b89bec39f9992edf50 { 'aliquot_tag': 'ALQ_2d5ce63e', 'gdc_sample_type': 'Primary Tumor' } C3N-04152.MethArray.Green.A C3N-04152 HNSCC Methylation Array tissue_normal CPT0224000006 203271740111_R03C01_Grn.idat 13676206 IDAT Green NA CPTAC3 6a9d95d0-966f-4036-8ed8-980e9f25367c aa7a73beb38782b71f16bdf78c3f9167 { 'aliquot_tag': 'ALQ_6938f110', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04152.MethArray.Green.T C3N-04152 HNSCC Methylation Array tumor CPT0223970006 203271750083_R04C01_Grn.idat 13676206 IDAT Green NA CPTAC3 f70db15c-d972-4771-a19f-e6cfe4fce5fc 55ddcaa2380adad074a79310c6a93f9e { 'aliquot_tag': 'ALQ_39b04246', 'gdc_sample_type': 'Primary Tumor' } C3N-04152.MethArray.Red.A C3N-04152 HNSCC Methylation Array tissue_normal CPT0224000006 203271740111_R03C01_Red.idat 13676206 IDAT Red NA CPTAC3 665b88f0-7e75-46ef-a394-52c77c818da1 099af1c28ef8daaeae486b76ae8e5dab { 'aliquot_tag': 'ALQ_6938f110', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -37275,16 +39656,19 @@ C3N-04152.miRNA-Seq.T C3N-04152 HNSCC miRNA-Seq tumor CPT0223970009 190228_UNC32 C3N-04152.miRNA-Seq.T.hg38 C3N-04152 HNSCC miRNA-Seq tumor CPT0223970009 47293791-e73b-4c9b-af0c-9094d632517d_mirnaseq_gdc_realn.bam 174631420 BAM harmonized CPTAC3 1ff1bfdf-5efb-41ef-9d58-708459dddc34 880e7dd7443690d7ddb0de5bb4725736 { 'aliquot_tag': 'ALQ_a90f5fd7', 'gdc_sample_type': 'Primary Tumor' } C3N-04152.RNA-Seq.chimeric.A.hg38 C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 c39411e8-f391-4fc1-895e-fe0338975550.rna_seq.chimeric.gdc_realn.bam 29140297 BAM chimeric harmonized CPTAC3 12120245-0de2-4219-a570-1ce78a2e63ab ea19b3bb9fbce7573beb4f9d444493b9 { 'aliquot_tag': 'ALQ_f987ec81', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04152.RNA-Seq.chimeric.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 3cab240e-1014-410a-b627-81ddbe16643a.rna_seq.chimeric.gdc_realn.bam 258737460 BAM chimeric harmonized CPTAC3 400850e8-37b3-47e5-975f-424cd88d3ff3 fef811c92587d7f94c5d568746bd80d8 { 'aliquot_tag': 'ALQ_a90f5fd7', 'gdc_sample_type': 'Primary Tumor' } -C3N-04152.RNA-Seq.genomic.A.hg38 C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 c39411e8-f391-4fc1-895e-fe0338975550.rna_seq.genomic.gdc_realn.bam 8650690199 BAM genomic harmonized CPTAC3 7edf6e69-6a0d-4698-8494-c09b87ac2874 17804308b6806fbcc47e8d0e6d4839ae { 'aliquot_tag': 'ALQ_f987ec81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04152.RNA-Seq.genomic.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 3cab240e-1014-410a-b627-81ddbe16643a.rna_seq.genomic.gdc_realn.bam 8789726788 BAM genomic harmonized CPTAC3 641d5ea8-f4a5-4cbd-96ca-0f4522b0bd0d efdb874f66714c1e780ecca03a55076d { 'aliquot_tag': 'ALQ_a90f5fd7', 'gdc_sample_type': 'Primary Tumor' } -C3N-04152.RNA-Seq.R1_L003.T C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 190328_UNC31-K00269_0204_BH5F5NBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3915129007 FASTQ R1_L003 unaligned CPTAC3 592d75c4-07b3-4b9f-9256-b3b8419d5b35 8c6de182cd3eb541b5d13c102086d8ad { 'aliquot_tag': 'ALQ_a90f5fd7', 'gdc_sample_type': 'Primary Tumor' } -C3N-04152.RNA-Seq.R1_L006.A C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCAAGTCT-AAGGATGA_S27_L006_R1_001.fastq.gz 4194048409 FASTQ R1_L006 unaligned CPTAC3 0996e53b-0079-4766-84a8-fd2930e6c7e0 ef795f2ba7ac431a16c5f3ff17d9e403 { 'aliquot_tag': 'ALQ_f987ec81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04152.RNA-Seq.R1_.T C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 20210714_P1_G3_WB7988_plate1_S74_R1_001.fastq.gz 5124447192 FASTQ R1_ unaligned CPTAC3 ca9e9400-2b81-401b-a309-cfd1526a881a f7ded11042b7bd727db017f4bb8f22f9 { 'aliquot_tag': 'ALQ_d3277c42', 'gdc_sample_type': 'Primary Tumor' } -C3N-04152.RNA-Seq.R2_L003.T C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 190328_UNC31-K00269_0204_BH5F5NBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 4453728627 FASTQ R2_L003 unaligned CPTAC3 4f30070d-b7da-464c-abe7-92bb0cbfc671 db41ef7b319f4e22e5a40a75f8dd5611 { 'aliquot_tag': 'ALQ_a90f5fd7', 'gdc_sample_type': 'Primary Tumor' } -C3N-04152.RNA-Seq.R2_L006.A C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCAAGTCT-AAGGATGA_S27_L006_R2_001.fastq.gz 4605646955 FASTQ R2_L006 unaligned CPTAC3 6d81b875-ee76-4cb8-8e1d-2d8e8338800d d1791abfac19980fcf227d01d52d0469 { 'aliquot_tag': 'ALQ_f987ec81', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04152.RNA-Seq.R2_.T C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 20210714_P1_G3_WB7988_plate1_S74_R2_001.fastq.gz 5360897002 FASTQ R2_ unaligned CPTAC3 617da4f7-6fc4-4ea9-bc81-c637d7670400 d0b57a15f400f8e10f4d63825de358d4 { 'aliquot_tag': 'ALQ_d3277c42', 'gdc_sample_type': 'Primary Tumor' } +C3N-04152.RNA-Seq.chimeric.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 3a430c14-6124-4a8d-9090-d5182295debf.rna_seq.chimeric.gdc_realn.bam 162896427 BAM chimeric harmonized CPTAC3 6dcb6efb-2668-450b-b94f-e9aca3bdf384 dd0eb48a072a78b2658dcc2879411f2e { 'aliquot_tag': 'ALQ_d3277c42', 'gdc_sample_type': 'Primary Tumor' } +C3N-04152.RNA-Seq.genomic.A.hg38 C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 c39411e8-f391-4fc1-895e-fe0338975550.rna_seq.genomic.gdc_realn.bam 8650690199 BAM genomic harmonized CPTAC3 ab8382cb-505f-4050-8247-1d01fa93477e 17804308b6806fbcc47e8d0e6d4839ae { 'aliquot_tag': 'ALQ_f987ec81', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04152.RNA-Seq.genomic.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 3cab240e-1014-410a-b627-81ddbe16643a.rna_seq.genomic.gdc_realn.bam 8789726788 BAM genomic harmonized CPTAC3 66094884-d08a-49a0-a61c-27e7b16c8533 efdb874f66714c1e780ecca03a55076d { 'aliquot_tag': 'ALQ_a90f5fd7', 'gdc_sample_type': 'Primary Tumor' } +C3N-04152.RNA-Seq.genomic.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 3a430c14-6124-4a8d-9090-d5182295debf.rna_seq.genomic.gdc_realn.bam 8284010310 BAM genomic harmonized CPTAC3 b6c32021-f064-4367-ab0a-202242a3c1bf 66926e97895b17fbc6427954266a3ee6 { 'aliquot_tag': 'ALQ_d3277c42', 'gdc_sample_type': 'Primary Tumor' } +C3N-04152.RNA-Seq.R1_L003.T C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 190328_UNC31-K00269_0204_BH5F5NBBXY_ACAGTG_S9_L003_R1_001.fastq.gz 3915129007 FASTQ R1_L003 unaligned CPTAC3 592d75c4-07b3-4b9f-9256-b3b8419d5b35 8c6de182cd3eb541b5d13c102086d8ad { 'aliquot_tag': 'ALQ_a90f5fd7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-04152.RNA-Seq.R1_L006.A C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCAAGTCT-AAGGATGA_S27_L006_R1_001.fastq.gz 4194048409 FASTQ R1_L006 unaligned CPTAC3 0996e53b-0079-4766-84a8-fd2930e6c7e0 ef795f2ba7ac431a16c5f3ff17d9e403 { 'aliquot_tag': 'ALQ_f987ec81', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-04152.RNA-Seq.R2_L003.T C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 190328_UNC31-K00269_0204_BH5F5NBBXY_ACAGTG_S9_L003_R2_001.fastq.gz 4453728627 FASTQ R2_L003 unaligned CPTAC3 4f30070d-b7da-464c-abe7-92bb0cbfc671 db41ef7b319f4e22e5a40a75f8dd5611 { 'aliquot_tag': 'ALQ_a90f5fd7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-04152.RNA-Seq.R2_L006.A C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCAAGTCT-AAGGATGA_S27_L006_R2_001.fastq.gz 4605646955 FASTQ R2_L006 unaligned CPTAC3 6d81b875-ee76-4cb8-8e1d-2d8e8338800d d1791abfac19980fcf227d01d52d0469 { 'aliquot_tag': 'ALQ_f987ec81', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-04152.RNA-Seq.T C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 20210714_P1_G3_WB7988_plate1_S74_R1_001.fastq.gz 5124447192 FASTQ unaligned CPTAC3 ca9e9400-2b81-401b-a309-cfd1526a881a f7ded11042b7bd727db017f4bb8f22f9 +C3N-04152.RNA-Seq.T C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 20210714_P1_G3_WB7988_plate1_S74_R2_001.fastq.gz 5360897002 FASTQ unaligned CPTAC3 617da4f7-6fc4-4ea9-bc81-c637d7670400 d0b57a15f400f8e10f4d63825de358d4 C3N-04152.RNA-Seq.transcriptome.A.hg38 C3N-04152 HNSCC RNA-Seq tissue_normal CPT0224000009 c39411e8-f391-4fc1-895e-fe0338975550.rna_seq.transcriptome.gdc_realn.bam 12816884414 BAM transcriptome harmonized CPTAC3 9684b0b7-b469-472e-80bf-301ac6cfbabb 338537260c889f85fad3c317ce71a723 { 'aliquot_tag': 'ALQ_f987ec81', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04152.RNA-Seq.transcriptome.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0223970009 3cab240e-1014-410a-b627-81ddbe16643a.rna_seq.transcriptome.gdc_realn.bam 11645886355 BAM transcriptome harmonized CPTAC3 94988e7a-2c1f-4aaa-94bd-5498a6eb252e 30607943f95b36f8e95fb4a94640c7d3 { 'aliquot_tag': 'ALQ_a90f5fd7', 'gdc_sample_type': 'Primary Tumor' } +C3N-04152.RNA-Seq.transcriptome.T.hg38 C3N-04152 HNSCC RNA-Seq tumor CPT0224010011 3a430c14-6124-4a8d-9090-d5182295debf.rna_seq.transcriptome.gdc_realn.bam 4731182657 BAM transcriptome harmonized CPTAC3 42d1e38a-48bd-43cc-8519-954a182f19c9 8b2d4e43371e5e86d89836095634c6c4 { 'aliquot_tag': 'ALQ_d3277c42', 'gdc_sample_type': 'Primary Tumor' } C3N-04152.WGS.N C3N-04152 HNSCC WGS blood_normal CPT0224090002 CPT0224090002.WholeGenome.RP-1303.bam 78306707451 BAM aligned CPTAC3 99cc4072-31ef-42e4-9fed-953a43db1706 be950352c585ba4dd6b5117e38c87882 { 'aliquot_tag': 'ALQ_63455778', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04152.WGS.N.hg38 C3N-04152 HNSCC WGS blood_normal CPT0224090002 1f4958f2-2798-46a9-962a-d4b79ab8cb9e_wgs_gdc_realn.bam 114941800553 BAM harmonized CPTAC3 cf5b4b80-e867-49b7-b668-6791a9c78a12 75abd5ad7fb6fd86aa154da0a0b6c27a { 'aliquot_tag': 'ALQ_63455778', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04152.WGS.T C3N-04152 HNSCC WGS tumor CPT0223970006 CPT0223970006.WholeGenome.RP-1303.bam 66052492900 BAM aligned CPTAC3 511c3e3b-1223-4f21-86f6-5a377854ee72 a8e92f87b3c6cee81de45c6b38e06d66 { 'aliquot_tag': 'ALQ_39b04246', 'gdc_sample_type': 'Primary Tumor' } @@ -37295,8 +39679,11 @@ C3N-04152.WXS.N C3N-04152 HNSCC WXS blood_normal CPT0224090002 CPT0224090002.Who C3N-04152.WXS.N.hg38 C3N-04152 HNSCC WXS blood_normal CPT0224090002 1f4958f2-2798-46a9-962a-d4b79ab8cb9e_wxs_gdc_realn.bam 31011742430 BAM harmonized CPTAC3 d182cfa9-ce18-41e1-a75e-9012d3a4d590 8d1a00300506a2b4f87dababb7a42266 { 'aliquot_tag': 'ALQ_63455778', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04152.WXS.T C3N-04152 HNSCC WXS tumor CPT0223970006 CPT0223970006.WholeExome.RP-1303.bam 22800065161 BAM aligned CPTAC3 921dcac7-6f04-4d81-8479-6d1d01a66a21 6b16a80d57bd6ef0457adb4ab6cb238a { 'aliquot_tag': 'ALQ_39b04246', 'gdc_sample_type': 'Primary Tumor' } C3N-04152.WXS.T.hg38 C3N-04152 HNSCC WXS tumor CPT0223970006 a6669705-0fcf-4d00-bb0e-d04dac02ec6f_wxs_gdc_realn.bam 31866404405 BAM harmonized CPTAC3 2c751d69-412d-462c-b1b5-8b25e6b6f9cd 6666e0c150271c38a13bc2d1ac4f2409 { 'aliquot_tag': 'ALQ_39b04246', 'gdc_sample_type': 'Primary Tumor' } -C3N-04153.RNA-Seq.R1_.T C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 20210714_P1_C12_WB7988_plate1_S36_R1_001.fastq.gz 4814166545 FASTQ R1_ unaligned CPTAC3 1951dd3d-b3bd-4373-bd66-c9d8e031b122 6ec89c448bedc1e34f26181db6b991a6 { 'aliquot_tag': 'ALQ_6ac53e74', 'gdc_sample_type': 'Primary Tumor' } -C3N-04153.RNA-Seq.R2_.T C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 20210714_P1_C12_WB7988_plate1_S36_R2_001.fastq.gz 5061610434 FASTQ R2_ unaligned CPTAC3 02683534-5fb5-4446-9fbf-3f71a7d1eb28 a402ca2a002ecfd874d99088d8fd0020 { 'aliquot_tag': 'ALQ_6ac53e74', 'gdc_sample_type': 'Primary Tumor' } +C3N-04153.RNA-Seq.chimeric.T.hg38 C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 c1e98d96-7c74-444a-a0c3-53858eeb0a13.rna_seq.chimeric.gdc_realn.bam 130018895 BAM chimeric harmonized CPTAC3 5f9f085b-4a8e-42fe-9bf3-0985f13d05bf a9ff1a1197de92326964988c1b1bbbbf { 'aliquot_tag': 'ALQ_6ac53e74', 'gdc_sample_type': 'Primary Tumor' } +C3N-04153.RNA-Seq.genomic.T.hg38 C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 c1e98d96-7c74-444a-a0c3-53858eeb0a13.rna_seq.genomic.gdc_realn.bam 7698188775 BAM genomic harmonized CPTAC3 d1eab65e-1b37-479b-a3c7-fc38c53e9295 95680ebb3230407b94af5331be847b0a { 'aliquot_tag': 'ALQ_6ac53e74', 'gdc_sample_type': 'Primary Tumor' } +C3N-04153.RNA-Seq.T C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 20210714_P1_C12_WB7988_plate1_S36_R1_001.fastq.gz 4814166545 FASTQ unaligned CPTAC3 1951dd3d-b3bd-4373-bd66-c9d8e031b122 6ec89c448bedc1e34f26181db6b991a6 +C3N-04153.RNA-Seq.T C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 20210714_P1_C12_WB7988_plate1_S36_R2_001.fastq.gz 5061610434 FASTQ unaligned CPTAC3 02683534-5fb5-4446-9fbf-3f71a7d1eb28 a402ca2a002ecfd874d99088d8fd0020 +C3N-04153.RNA-Seq.transcriptome.T.hg38 C3N-04153 HNSCC RNA-Seq tumor CPT0250860001 c1e98d96-7c74-444a-a0c3-53858eeb0a13.rna_seq.transcriptome.gdc_realn.bam 5118912427 BAM transcriptome harmonized CPTAC3 c127de33-3dca-4f06-92e3-d051416fb966 ac705d24f9fc4f5c8d6c77ddde81f08e { 'aliquot_tag': 'ALQ_6ac53e74', 'gdc_sample_type': 'Primary Tumor' } C3N-04155.MethArray.Green.A C3N-04155 LSCC Methylation Array tissue_normal CPT0223820006 203219650065_R04C01_Grn.idat 13676226 IDAT Green NA CPTAC3 ca5763bf-5d1e-43d6-990c-82f43d5ce9fc 7a61814d6f9f51e70ccf785734d46867 { 'aliquot_tag': 'ALQ_3a0c1e93', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04155.MethArray.Green.T C3N-04155 LSCC Methylation Array tumor CPT0223790006 203219650065_R06C01_Grn.idat 13676226 IDAT Green NA CPTAC3 25002167-92d7-47aa-975a-499008b3ae01 f43d5264d1fe09be2f650d6d05012867 { 'aliquot_tag': 'ALQ_bc8a9d57', 'gdc_sample_type': 'Primary Tumor' } C3N-04155.MethArray.Red.A C3N-04155 LSCC Methylation Array tissue_normal CPT0223820006 203219650065_R04C01_Red.idat 13676226 IDAT Red NA CPTAC3 fd9accea-5209-4d83-b3e9-231ca109eb80 4d28f52c3e29de24a32ba072fbde9fc4 { 'aliquot_tag': 'ALQ_3a0c1e93', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -37304,9 +39691,9 @@ C3N-04155.MethArray.Red.T C3N-04155 LSCC Methylation Array tumor CPT0223790006 2 C3N-04155.miRNA-Seq.T C3N-04155 LSCC miRNA-Seq tumor CPT0223790009 190228_UNC32-K00270_0151_AHYLY3BBXX_AGTCAA_S13_L006_R1_001.unaln.bam 224315099 BAM unaligned CPTAC3 e1dafc40-9e2d-4383-a3b2-1453656accc8 ce7b2380f598eb284f66ff9e5529f7a1 { 'aliquot_tag': 'ALQ_2c3580c6', 'gdc_sample_type': 'Primary Tumor' } C3N-04155.miRNA-Seq.T.hg38 C3N-04155 LSCC miRNA-Seq tumor CPT0223790009 da5d0274-376c-4cfe-a1ca-236b93a9b32d_mirnaseq_gdc_realn.bam 261978344 BAM harmonized CPTAC3 f5d2bb65-b200-4f4c-8ff5-f119aa9cce53 f7fe54f4465a043ffeff975a45ffa658 { 'aliquot_tag': 'ALQ_2c3580c6', 'gdc_sample_type': 'Primary Tumor' } C3N-04155.RNA-Seq.chimeric.T.hg38 C3N-04155 LSCC RNA-Seq tumor CPT0223790009 3bd6a524-577b-4ff6-9b92-c9ff2c856773.rna_seq.chimeric.gdc_realn.bam 60361160 BAM chimeric harmonized CPTAC3 953b7cea-b24c-4de5-b326-46e9f6d2a295 7148785525a0b1293b8a2a0498d46992 { 'aliquot_tag': 'ALQ_2c3580c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04155.RNA-Seq.genomic.T.hg38 C3N-04155 LSCC RNA-Seq tumor CPT0223790009 3bd6a524-577b-4ff6-9b92-c9ff2c856773.rna_seq.genomic.gdc_realn.bam 9081337661 BAM genomic harmonized CPTAC3 1d457e0a-1a57-4b85-ae9b-4a9fd12a1a30 87d32423e487e44a55db52a2a6019a2d { 'aliquot_tag': 'ALQ_2c3580c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04155.RNA-Seq.R1_L006.T C3N-04155 LSCC RNA-Seq tumor CPT0223790009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L006_R1_001.fastq.gz 4223748945 FASTQ R1_L006 unaligned CPTAC3 45c5331a-3808-400a-84a7-b7032b7d45de 985b5231d5e087e2de0e3232071f6b91 { 'aliquot_tag': 'ALQ_2c3580c6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04155.RNA-Seq.R2_L006.T C3N-04155 LSCC RNA-Seq tumor CPT0223790009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L006_R2_001.fastq.gz 4485362072 FASTQ R2_L006 unaligned CPTAC3 8269e2b1-5920-47e5-b852-0ec27bd2d29e 2a01618e73f40544ffab034dfa2535aa { 'aliquot_tag': 'ALQ_2c3580c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-04155.RNA-Seq.genomic.T.hg38 C3N-04155 LSCC RNA-Seq tumor CPT0223790009 3bd6a524-577b-4ff6-9b92-c9ff2c856773.rna_seq.genomic.gdc_realn.bam 9081337661 BAM genomic harmonized CPTAC3 862f40c9-a587-412f-89a0-e65a7ff7312f 87d32423e487e44a55db52a2a6019a2d { 'aliquot_tag': 'ALQ_2c3580c6', 'gdc_sample_type': 'Primary Tumor' } +C3N-04155.RNA-Seq.R1_L006.T C3N-04155 LSCC RNA-Seq tumor CPT0223790009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L006_R1_001.fastq.gz 4223748945 FASTQ R1_L006 unaligned CPTAC3 45c5331a-3808-400a-84a7-b7032b7d45de 985b5231d5e087e2de0e3232071f6b91 { 'aliquot_tag': 'ALQ_2c3580c6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-04155.RNA-Seq.R2_L006.T C3N-04155 LSCC RNA-Seq tumor CPT0223790009 190205_UNC32-K00270_0144_BH3M3NBBXY_AGTCAA_S2_L006_R2_001.fastq.gz 4485362072 FASTQ R2_L006 unaligned CPTAC3 8269e2b1-5920-47e5-b852-0ec27bd2d29e 2a01618e73f40544ffab034dfa2535aa { 'aliquot_tag': 'ALQ_2c3580c6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } C3N-04155.RNA-Seq.transcriptome.T.hg38 C3N-04155 LSCC RNA-Seq tumor CPT0223790009 3bd6a524-577b-4ff6-9b92-c9ff2c856773.rna_seq.transcriptome.gdc_realn.bam 11466747049 BAM transcriptome harmonized CPTAC3 1ad65ff5-f3ff-41bd-9874-ba246549de5f cd97a900c66c3794ffc6a4110ddf9da1 { 'aliquot_tag': 'ALQ_2c3580c6', 'gdc_sample_type': 'Primary Tumor' } C3N-04155.WGS.N C3N-04155 LSCC WGS blood_normal CPT0223910002 CPT0223910002.WholeGenome.RP-1303.bam 53210378576 BAM aligned CPTAC3 c743421e-44e7-4da0-a7be-8644ae05dd79 5d766b91369b8d2f11507fbd813813cd { 'aliquot_tag': 'ALQ_b19d73ff', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04155.WGS.N.hg38 C3N-04155 LSCC WGS blood_normal CPT0223910002 4bd327be-a61d-42a5-8a4f-f2bbd3a7503e_wgs_gdc_realn.bam 77919095694 BAM harmonized CPTAC3 cad85f10-c277-4559-99fb-32517840e29a 6724a2a8136774493143394a89638efa { 'aliquot_tag': 'ALQ_b19d73ff', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37326,16 +39713,16 @@ C3N-04157.miRNA-Seq.A C3N-04157 LUAD miRNA-Seq tissue_normal CPT0251200009 19072 C3N-04157.miRNA-Seq.A.hg38 C3N-04157 LUAD miRNA-Seq tissue_normal CPT0251200009 2707c58f-6966-4a2d-a985-2e8e1601c7d8_mirnaseq_gdc_realn.bam 243508556 BAM harmonized CPTAC3 d27940f3-e678-495e-a34d-3c5d832898bc 2f0ab54a9b26188d8d099877ba86b097 { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04157.miRNA-Seq.T C3N-04157 LUAD miRNA-Seq tumor CPT0251180013 190712_UNC32-K00270_0192_BH7HL3BBXY_TATAAT_S20_L004_R1_001.unaln.bam 206201655 BAM unaligned CPTAC3 1a63221d-85f5-48cd-8930-054f90ef2744 9a92a4c92db2979984c542ac310219ae { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor' } C3N-04157.miRNA-Seq.T.hg38 C3N-04157 LUAD miRNA-Seq tumor CPT0251180013 13a152b0-3ccf-4886-91cb-340a59bff3c3_mirnaseq_gdc_realn.bam 227056931 BAM harmonized CPTAC3 9a370143-301d-4574-8150-bc9ae101eab9 b738a0aadd6c8f34342eb5479dbfcde3 { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor' } -C3N-04157.RNA-Seq.chimeric.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 10d96189-91b0-4451-a547-1873296665db.rna_seq.chimeric.gdc_realn.bam 28731470 BAM chimeric harmonized CPTAC3 6e26865d-d206-4d7d-98a7-63ee50bdc3f3 7233326e5979123857973609cedcf25f { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04157.RNA-Seq.chimeric.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 09e53fe0-5d16-4f3c-b410-35db7cc165f2.rna_seq.chimeric.gdc_realn.bam 26946658 BAM chimeric harmonized CPTAC3 491cbdb8-4d47-4f26-af0b-3d3d1748477d 8b59e1266f2c5418786b7289e845232f { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor' } -C3N-04157.RNA-Seq.genomic.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 10d96189-91b0-4451-a547-1873296665db.rna_seq.genomic.gdc_realn.bam 12804834810 BAM genomic harmonized CPTAC3 101f5f32-99e4-4761-ab49-f70368a37466 e4590368d73a4550177ba6c5f2e1b83d { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04157.RNA-Seq.genomic.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 09e53fe0-5d16-4f3c-b410-35db7cc165f2.rna_seq.genomic.gdc_realn.bam 7583252523 BAM genomic harmonized CPTAC3 9b9944dd-cf1f-40ae-a99f-291e18fec0f4 61362579be36bf599f9ff8a0674f177f { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor' } -C3N-04157.RNA-Seq.R1_L001.A C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 190607_UNC32-K00270_0178_AH773TBBXY_ACGCACCT-GGTGAAGG_S3_L001_R1_001.fastq.gz 4038517228 FASTQ R1_L001 unaligned CPTAC3 ce00ba5d-0966-409c-9374-f87417c13f43 f35d9cf023038ce353c27d8f97f3975a { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04157.RNA-Seq.R1_L001.T C3N-04157 LUAD RNA-Seq tumor CPT0251180013 190702_UNC32-K00270_0188_BH7CLJBBXY_ACGCACCT-GGTGAAGG_S3_L001_R1_001.fastq.gz 3537356620 FASTQ R1_L001 unaligned CPTAC3 17c4c6e0-c720-42a4-9468-1ff583b77600 716078a913798027f1feb6f40d7ee137 { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor' } -C3N-04157.RNA-Seq.R2_L001.A C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 190607_UNC32-K00270_0178_AH773TBBXY_ACGCACCT-GGTGAAGG_S3_L001_R2_001.fastq.gz 4543386407 FASTQ R2_L001 unaligned CPTAC3 48e7303d-c4cd-4b51-a2da-3b6270f5c3cc 982b026392d3a9dc4f6bee0d68eb2f09 { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04157.RNA-Seq.R2_L001.T C3N-04157 LUAD RNA-Seq tumor CPT0251180013 190702_UNC32-K00270_0188_BH7CLJBBXY_ACGCACCT-GGTGAAGG_S3_L001_R2_001.fastq.gz 3873947965 FASTQ R2_L001 unaligned CPTAC3 c87793ec-46b5-4d9c-badf-c8067bfa0597 edb11e4df7a7611434c4192ef783b0f9 { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor' } -C3N-04157.RNA-Seq.transcriptome.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 10d96189-91b0-4451-a547-1873296665db.rna_seq.transcriptome.gdc_realn.bam 7901548401 BAM transcriptome harmonized CPTAC3 138aeb26-f340-4192-8f41-d7aa3a810e31 de735d0457d539041603db8a25399ab0 { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04157.RNA-Seq.transcriptome.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 09e53fe0-5d16-4f3c-b410-35db7cc165f2.rna_seq.transcriptome.gdc_realn.bam 7973983359 BAM transcriptome harmonized CPTAC3 f4829bb6-e734-41bb-adb8-a9d57b2e7e68 efbc5f8436a94b33175fa9884f0cb4f9 { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor' } +C3N-04157.RNA-Seq.chimeric.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 b7e1945e-b5d5-4357-bac0-6db45ab516db.rna_seq.chimeric.gdc_realn.bam 28712752 BAM chimeric harmonized CPTAC3 68d2f8e7-94ae-43f8-9350-60b2b7023f2f db2ba3c56c96d0a1d28d9777d85f19b4 { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04157.RNA-Seq.chimeric.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 3d7bfce7-47cc-431e-bc59-bf54529b7c3c.rna_seq.chimeric.gdc_realn.bam 26941313 BAM chimeric harmonized CPTAC3 ded10bdb-88cc-417c-a5b6-3d3bca4dd94c e3f765bb2eddec61122222c3ec1f57c4 { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor' } +C3N-04157.RNA-Seq.genomic.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 b7e1945e-b5d5-4357-bac0-6db45ab516db.rna_seq.genomic.gdc_realn.bam 12804974156 BAM genomic harmonized CPTAC3 b4d9cb6f-d0b0-4328-9650-3c20b3233c3e eca574097f2f220b7d034c04b578327b { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04157.RNA-Seq.genomic.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 3d7bfce7-47cc-431e-bc59-bf54529b7c3c.rna_seq.genomic.gdc_realn.bam 7584667596 BAM genomic harmonized CPTAC3 06eee5e5-c418-40aa-b7c8-e84e6370cff7 72deba56c2d417eb48eb99d84f1699c5 { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor' } +C3N-04157.RNA-Seq.R1_L001.A C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 190607_UNC32-K00270_0178_AH773TBBXY_ACGCACCT-GGTGAAGG_S3_L001_R1_001.fastq.gz 4038517228 FASTQ R1_L001 unaligned CPTAC3 ce00ba5d-0966-409c-9374-f87417c13f43 f35d9cf023038ce353c27d8f97f3975a { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-04157.RNA-Seq.R1_L001.T C3N-04157 LUAD RNA-Seq tumor CPT0251180013 190702_UNC32-K00270_0188_BH7CLJBBXY_ACGCACCT-GGTGAAGG_S3_L001_R1_001.fastq.gz 3537356620 FASTQ R1_L001 unaligned CPTAC3 17c4c6e0-c720-42a4-9468-1ff583b77600 716078a913798027f1feb6f40d7ee137 { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-04157.RNA-Seq.R2_L001.A C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 190607_UNC32-K00270_0178_AH773TBBXY_ACGCACCT-GGTGAAGG_S3_L001_R2_001.fastq.gz 4543386407 FASTQ R2_L001 unaligned CPTAC3 48e7303d-c4cd-4b51-a2da-3b6270f5c3cc 982b026392d3a9dc4f6bee0d68eb2f09 { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-04157.RNA-Seq.R2_L001.T C3N-04157 LUAD RNA-Seq tumor CPT0251180013 190702_UNC32-K00270_0188_BH7CLJBBXY_ACGCACCT-GGTGAAGG_S3_L001_R2_001.fastq.gz 3873947965 FASTQ R2_L001 unaligned CPTAC3 c87793ec-46b5-4d9c-badf-c8067bfa0597 edb11e4df7a7611434c4192ef783b0f9 { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-04157.RNA-Seq.transcriptome.A.hg38 C3N-04157 LUAD RNA-Seq tissue_normal CPT0251200009 b7e1945e-b5d5-4357-bac0-6db45ab516db.rna_seq.transcriptome.gdc_realn.bam 8865049646 BAM transcriptome harmonized CPTAC3 7545efab-dbd0-43d8-851d-182245fbb563 40d822282544291ac0a27cfae311522c { 'aliquot_tag': 'ALQ_ecb26b34', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04157.RNA-Seq.transcriptome.T.hg38 C3N-04157 LUAD RNA-Seq tumor CPT0251180013 3d7bfce7-47cc-431e-bc59-bf54529b7c3c.rna_seq.transcriptome.gdc_realn.bam 8993669239 BAM transcriptome harmonized CPTAC3 4063b478-ecd1-4594-89df-3c92df28098e 122cb07d82b2ed5edb1c5b726e8867c5 { 'aliquot_tag': 'ALQ_a3988a04', 'gdc_sample_type': 'Primary Tumor' } C3N-04157.WGS.N C3N-04157 LUAD WGS blood_normal CPT0251290002 CPT0251290002.WholeGenome.RP-1303.bam 63029138165 BAM aligned CPTAC3 168f26f4-b3d5-40f1-b5ca-84127cbaac70 54802477d009d95e9da401d6aa2827c4 { 'aliquot_tag': 'ALQ_7670d0cd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04157.WGS.N.hg38 C3N-04157 LUAD WGS blood_normal CPT0251290002 fee32560-8cce-466c-abf6-1a732c5ed2a0_wgs_gdc_realn.bam 91231808613 BAM harmonized CPTAC3 84153e0f-0b09-40db-b5b7-d65fe981258f 53154f2f54ca7f5a14822b01734459bf { 'aliquot_tag': 'ALQ_7670d0cd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04157.WGS.T C3N-04157 LUAD WGS tumor CPT0251180006 CPT0251180006.WholeGenome.RP-1303.bam 59828491320 BAM aligned CPTAC3 c1fb8d89-d91a-4419-91ec-65d293b9821b 053feeba465532e38d9f83629feb91a6 { 'aliquot_tag': 'ALQ_cae94fca', 'gdc_sample_type': 'Primary Tumor' } @@ -37354,12 +39741,12 @@ C3N-04162.miRNA-Seq.T C3N-04162 LSCC miRNA-Seq tumor CPT0222730009 190206_UNC31- C3N-04162.miRNA-Seq.T.hg38 C3N-04162 LSCC miRNA-Seq tumor CPT0222730009 dd091697-f395-4671-95e2-b2bf2133a8ff_mirnaseq_gdc_realn.bam 164381081 BAM harmonized CPTAC3 cafe578d-6189-4c83-8deb-888401cbdc57 27069d7dc013620602a5c48c5a6276a7 { 'aliquot_tag': 'ALQ_c0f293d3', 'gdc_sample_type': 'Primary Tumor' } C3N-04162.RNA-Seq.chimeric.A.hg38 C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 92c0d55d-f36f-43ae-9ee6-90f23fcd5e83.rna_seq.chimeric.gdc_realn.bam 147601459 BAM chimeric harmonized CPTAC3 0c30f0a6-f85a-4b6a-8bd6-44c649d668bc 12aa3ef7e8eed06148c1b9e170767921 { 'aliquot_tag': 'ALQ_e26d5252', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04162.RNA-Seq.chimeric.T.hg38 C3N-04162 LSCC RNA-Seq tumor CPT0222730009 ea8eaf97-b88c-4d25-a682-acdddefc24d9.rna_seq.chimeric.gdc_realn.bam 58014560 BAM chimeric harmonized CPTAC3 7b319e58-af09-42af-8228-35c5f3373b02 0ae5047698a2423f6dfaed297c352560 { 'aliquot_tag': 'ALQ_c0f293d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-04162.RNA-Seq.genomic.A.hg38 C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 92c0d55d-f36f-43ae-9ee6-90f23fcd5e83.rna_seq.genomic.gdc_realn.bam 10129008281 BAM genomic harmonized CPTAC3 766b3538-6c74-459b-8031-70cf7a28d7a3 ec2a79108ea4c31278515dc2cd8567ac { 'aliquot_tag': 'ALQ_e26d5252', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04162.RNA-Seq.genomic.T.hg38 C3N-04162 LSCC RNA-Seq tumor CPT0222730009 ea8eaf97-b88c-4d25-a682-acdddefc24d9.rna_seq.genomic.gdc_realn.bam 8841113738 BAM genomic harmonized CPTAC3 4ee4a318-eea1-47bb-bea9-845ea2e14754 827395cb0255cbb78c68fcfdee22df94 { 'aliquot_tag': 'ALQ_c0f293d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-04162.RNA-Seq.R1_L005.T C3N-04162 LSCC RNA-Seq tumor CPT0222730009 190205_UNC32-K00270_0144_BH3M3NBBXY_CTTGTA_S19_L005_R1_001.fastq.gz 3922357305 FASTQ R1_L005 unaligned CPTAC3 ed1ec1fe-03c0-47b4-9922-147935abb916 d3663e2e9708bf7ed901b0b562a42144 { 'aliquot_tag': 'ALQ_c0f293d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-04162.RNA-Seq.R1_L008.A C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L008_R1_001.fastq.gz 4231764884 FASTQ R1_L008 unaligned CPTAC3 76a3f97a-3352-4be2-bed3-bdef4fd3596e b8b919b059876d7c6079323900e2b6be { 'aliquot_tag': 'ALQ_e26d5252', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04162.RNA-Seq.R2_L005.T C3N-04162 LSCC RNA-Seq tumor CPT0222730009 190205_UNC32-K00270_0144_BH3M3NBBXY_CTTGTA_S19_L005_R2_001.fastq.gz 4239447924 FASTQ R2_L005 unaligned CPTAC3 386d1cec-0df1-448c-a907-6c9967e1d7a6 f281fdb7f63b112e2099b041aa2e1555 { 'aliquot_tag': 'ALQ_c0f293d3', 'gdc_sample_type': 'Primary Tumor' } -C3N-04162.RNA-Seq.R2_L008.A C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L008_R2_001.fastq.gz 4513521442 FASTQ R2_L008 unaligned CPTAC3 5473c738-dafa-4387-8108-b66d7ae02c66 3b66c06012aed495e2401dae660f411c { 'aliquot_tag': 'ALQ_e26d5252', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04162.RNA-Seq.genomic.A.hg38 C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 92c0d55d-f36f-43ae-9ee6-90f23fcd5e83.rna_seq.genomic.gdc_realn.bam 10129008281 BAM genomic harmonized CPTAC3 ccb539c4-8567-4c3e-93aa-d8ffd4736003 ec2a79108ea4c31278515dc2cd8567ac { 'aliquot_tag': 'ALQ_e26d5252', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04162.RNA-Seq.genomic.T.hg38 C3N-04162 LSCC RNA-Seq tumor CPT0222730009 ea8eaf97-b88c-4d25-a682-acdddefc24d9.rna_seq.genomic.gdc_realn.bam 8841113738 BAM genomic harmonized CPTAC3 7105963b-4879-42fd-9387-100b21c5462b 827395cb0255cbb78c68fcfdee22df94 { 'aliquot_tag': 'ALQ_c0f293d3', 'gdc_sample_type': 'Primary Tumor' } +C3N-04162.RNA-Seq.R1_L005.T C3N-04162 LSCC RNA-Seq tumor CPT0222730009 190205_UNC32-K00270_0144_BH3M3NBBXY_CTTGTA_S19_L005_R1_001.fastq.gz 3922357305 FASTQ R1_L005 unaligned CPTAC3 ed1ec1fe-03c0-47b4-9922-147935abb916 d3663e2e9708bf7ed901b0b562a42144 { 'aliquot_tag': 'ALQ_c0f293d3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-04162.RNA-Seq.R1_L008.A C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L008_R1_001.fastq.gz 4231764884 FASTQ R1_L008 unaligned CPTAC3 76a3f97a-3352-4be2-bed3-bdef4fd3596e b8b919b059876d7c6079323900e2b6be { 'aliquot_tag': 'ALQ_e26d5252', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-04162.RNA-Seq.R2_L005.T C3N-04162 LSCC RNA-Seq tumor CPT0222730009 190205_UNC32-K00270_0144_BH3M3NBBXY_CTTGTA_S19_L005_R2_001.fastq.gz 4239447924 FASTQ R2_L005 unaligned CPTAC3 386d1cec-0df1-448c-a907-6c9967e1d7a6 f281fdb7f63b112e2099b041aa2e1555 { 'aliquot_tag': 'ALQ_c0f293d3', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-04162.RNA-Seq.R2_L008.A C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 190208_UNC32-K00270_0146_BH3V2WBBXY_GTGAAA_S7_L008_R2_001.fastq.gz 4513521442 FASTQ R2_L008 unaligned CPTAC3 5473c738-dafa-4387-8108-b66d7ae02c66 3b66c06012aed495e2401dae660f411c { 'aliquot_tag': 'ALQ_e26d5252', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } C3N-04162.RNA-Seq.transcriptome.A.hg38 C3N-04162 LSCC RNA-Seq tissue_normal CPT0222740006 92c0d55d-f36f-43ae-9ee6-90f23fcd5e83.rna_seq.transcriptome.gdc_realn.bam 9174118949 BAM transcriptome harmonized CPTAC3 d6ef0f6d-14c4-4108-a999-5bf7eeafe8ab bfcf60836e89349444a746f38f7f1783 { 'aliquot_tag': 'ALQ_e26d5252', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04162.RNA-Seq.transcriptome.T.hg38 C3N-04162 LSCC RNA-Seq tumor CPT0222730009 ea8eaf97-b88c-4d25-a682-acdddefc24d9.rna_seq.transcriptome.gdc_realn.bam 9213107903 BAM transcriptome harmonized CPTAC3 8d0ee8e1-6681-4a29-839b-ff8a85e8bc8b d70d94747070f5887cb1cbc2cd6de6b9 { 'aliquot_tag': 'ALQ_c0f293d3', 'gdc_sample_type': 'Primary Tumor' } C3N-04162.WGS.N C3N-04162 LSCC WGS blood_normal CPT0222830002 CPT0222830002.WholeGenome.RP-1303.bam 56410315192 BAM aligned CPTAC3 45c41b0d-5fc2-4420-bba3-04a77a59d642 fc4dd58a035e16ddabb2315d5c0b7ce1 { 'aliquot_tag': 'ALQ_a676f88e', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37374,11 +39761,11 @@ C3N-04167.MethArray.Green.T C3N-04167 LSCC Methylation Array tumor CPT0249050006 C3N-04167.MethArray.Red.T C3N-04167 LSCC Methylation Array tumor CPT0249050006 204367490029_R06C01_Red.idat 13677885 IDAT Red NA CPTAC3 4f2951e2-0f1a-483f-8c7a-913ee489ad59 98c3f65db7414c7f7dcc6289b1595da6 { 'aliquot_tag': 'ALQ_6601627', 'gdc_sample_type': 'Primary Tumor' } C3N-04167.miRNA-Seq.T C3N-04167 LSCC miRNA-Seq tumor CPT0249050009 200224_UNC31-K00269_0267_AHC722BBXY_GGCTAC_S11_L006_R1_001.unaln.bam 238350119 BAM unaligned CPTAC3 d05a452a-7015-46a6-a29a-3bda5e4f8a46 b18fd522683602cec0ff65f5e71353f2 { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor' } C3N-04167.miRNA-Seq.T.hg38 C3N-04167 LSCC miRNA-Seq tumor CPT0249050009 f12c1f2e-078a-43d4-b1b6-798d34beb3d5_mirnaseq_gdc_realn.bam 260298458 BAM harmonized CPTAC3 f4cd913a-0692-406f-8c71-7705e4065cc0 e77511bba62d83f5c334d7f851d678fc { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04167.RNA-Seq.chimeric.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 e1997553-0d34-4fc5-bf11-c83c2f9fc125.rna_seq.chimeric.gdc_realn.bam 68565953 BAM chimeric harmonized CPTAC3 acb27354-97e4-4869-8a59-6105b5c4a1b5 e6ce080b70d7538f63e5efb3ebb47e66 { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04167.RNA-Seq.genomic.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 e1997553-0d34-4fc5-bf11-c83c2f9fc125.rna_seq.genomic.gdc_realn.bam 7682036847 BAM genomic harmonized CPTAC3 bd419893-18f6-4dd9-b264-e96aaafd9b56 09047a8113cd80d549b15c62e11e0460 { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04167.RNA-Seq.R1_L007.T C3N-04167 LSCC RNA-Seq tumor CPT0249050009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATCTATC-ATGAGGCT_S27_L007_R1_001.fastq.gz 3708412646 FASTQ R1_L007 unaligned CPTAC3 8fa96e75-2009-4b73-a20a-689d08d646dd e36c118d4314e5f896600fbdcff434aa { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04167.RNA-Seq.R2_L007.T C3N-04167 LSCC RNA-Seq tumor CPT0249050009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATCTATC-ATGAGGCT_S27_L007_R2_001.fastq.gz 3918445251 FASTQ R2_L007 unaligned CPTAC3 b52c5dd8-978c-4368-9368-102a5cac3a4a faaf72850759eebe788f28d0467a7f7d { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04167.RNA-Seq.transcriptome.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 e1997553-0d34-4fc5-bf11-c83c2f9fc125.rna_seq.transcriptome.gdc_realn.bam 8638782057 BAM transcriptome harmonized CPTAC3 c699a3d3-1684-42c8-a237-7ef66d44c100 14c75c1aba83479eb8210af8d4965afd { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor' } +C3N-04167.RNA-Seq.chimeric.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 9f32907b-1e4b-4b55-8f73-b4798c28ff84.rna_seq.chimeric.gdc_realn.bam 68556969 BAM chimeric harmonized CPTAC3 d95ce2d6-bc36-45d4-b121-a93ebb7b9a87 94c704e31cc45107a0cf169b4176579e { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor' } +C3N-04167.RNA-Seq.genomic.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 9f32907b-1e4b-4b55-8f73-b4798c28ff84.rna_seq.genomic.gdc_realn.bam 7683098486 BAM genomic harmonized CPTAC3 9cea4674-8212-43ac-a9c6-d0687ed787b7 51150a9fdd6024a270eff7d8b4a89408 { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor' } +C3N-04167.RNA-Seq.R1_L007.T C3N-04167 LSCC RNA-Seq tumor CPT0249050009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATCTATC-ATGAGGCT_S27_L007_R1_001.fastq.gz 3708412646 FASTQ R1_L007 unaligned CPTAC3 8fa96e75-2009-4b73-a20a-689d08d646dd e36c118d4314e5f896600fbdcff434aa { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-04167.RNA-Seq.R2_L007.T C3N-04167 LSCC RNA-Seq tumor CPT0249050009 200428_UNC32-K00270_0243_AHG3Y3BBXY_GATCTATC-ATGAGGCT_S27_L007_R2_001.fastq.gz 3918445251 FASTQ R2_L007 unaligned CPTAC3 b52c5dd8-978c-4368-9368-102a5cac3a4a faaf72850759eebe788f28d0467a7f7d { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-04167.RNA-Seq.transcriptome.T.hg38 C3N-04167 LSCC RNA-Seq tumor CPT0249050009 9f32907b-1e4b-4b55-8f73-b4798c28ff84.rna_seq.transcriptome.gdc_realn.bam 9697583744 BAM transcriptome harmonized CPTAC3 f14d0f04-a3e9-4f1e-89ca-154ecd4f09b2 2dffb56df6cb71442dd8fb386cb38193 { 'aliquot_tag': 'ALQ_96df0bb6', 'gdc_sample_type': 'Primary Tumor' } C3N-04167.WGS.N C3N-04167 LSCC WGS blood_normal CPT0249170002 CPT0249170002.WholeGenome.RP-2158.bam 24039273983 BAM aligned CPTAC3 e70f6494-f6c6-4a38-92ca-be988a887e1d 086eb339ffbe20bae163b653bf7343fe { 'aliquot_tag': 'ALQ_b09152fb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04167.WGS.N.hg38 C3N-04167 LSCC WGS blood_normal CPT0249170002 0675bc40-c123-4b18-a757-d78c4b35e44d_wgs_gdc_realn.bam 70803984910 BAM harmonized CPTAC3 2771a10d-8489-46ac-8cc4-3b167f93421f c1d739e0c13289d798cbdf914c5f388c { 'aliquot_tag': 'ALQ_b09152fb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04167.WGS.T C3N-04167 LSCC WGS tumor CPT0249050006 CPT0249050006.WholeGenome.RP-2158.bam 26382517132 BAM aligned CPTAC3 8e427eb2-b52e-4407-b5a1-5ab59953505d 032b6b8753fe22d298e5a97d0c506548 { 'aliquot_tag': 'ALQ_6601627', 'gdc_sample_type': 'Primary Tumor' } @@ -37395,16 +39782,16 @@ C3N-04168.miRNA-Seq.A C3N-04168 LUAD miRNA-Seq tissue_normal CPT0255870009 19072 C3N-04168.miRNA-Seq.A.hg38 C3N-04168 LUAD miRNA-Seq tissue_normal CPT0255870009 98232ab3-22e9-4d5c-b623-3a4feddd6395_mirnaseq_gdc_realn.bam 153258812 BAM harmonized CPTAC3 a2226e10-9cef-44c1-ac5b-5cc09a206801 c1b4096bb4793e2f08b662f57a7d0b4e { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04168.miRNA-Seq.T C3N-04168 LUAD miRNA-Seq tumor CPT0251530009 190722_UNC31-K00269_0234_AH7VGTBBXY_ACAGTG_S1_L007_R1_001.unaln.bam 197260928 BAM unaligned CPTAC3 aaa8871f-2fa2-4714-99d0-b178d22d76e5 c3c28fd11b9a5793197afcd8b20a767e { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor' } C3N-04168.miRNA-Seq.T.hg38 C3N-04168 LUAD miRNA-Seq tumor CPT0251530009 a66827c8-6062-448e-9d0f-4dc6b74342c3_mirnaseq_gdc_realn.bam 212858167 BAM harmonized CPTAC3 cea39111-6713-4a77-a6d8-2b8ef719ab9a aaacf98502e331df907b03e4b737dbf9 { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04168.RNA-Seq.chimeric.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 7356583d-96e8-4dc4-9384-b7279317aff9.rna_seq.chimeric.gdc_realn.bam 26979673 BAM chimeric harmonized CPTAC3 bd5cfc6d-0bc0-4c80-83b7-fbc696a4dddd fc88bf1834abc454eb5fdf760499ee70 { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04168.RNA-Seq.chimeric.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 46bd90cb-6bba-476c-83cd-d36adbce3e92.rna_seq.chimeric.gdc_realn.bam 32347699 BAM chimeric harmonized CPTAC3 c3de5aeb-fd02-4444-8143-c15706b971b0 3748800f4a6fbac92747049fa676eb83 { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04168.RNA-Seq.genomic.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 7356583d-96e8-4dc4-9384-b7279317aff9.rna_seq.genomic.gdc_realn.bam 14195644235 BAM genomic harmonized CPTAC3 299bc77c-07da-4f54-aaa9-6ad6da51ef03 51c6412ae71baa6cae7c5b835fe55534 { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04168.RNA-Seq.genomic.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 46bd90cb-6bba-476c-83cd-d36adbce3e92.rna_seq.genomic.gdc_realn.bam 8058242610 BAM genomic harmonized CPTAC3 643a1594-232b-4f45-8c09-7f3195a11d0d ed3df51030c565db46153bae7eff9643 { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04168.RNA-Seq.R1_L001.A C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 190607_UNC32-K00270_0178_AH773TBBXY_TACTCATA-CCTGTGGC_S2_L001_R1_001.fastq.gz 3998146335 FASTQ R1_L001 unaligned CPTAC3 3bc28001-7c13-427c-9cb1-a67a8d22dcab af85fed4d1dd80f7f56d6f0598230fd2 { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04168.RNA-Seq.R1_L007.T C3N-04168 LUAD RNA-Seq tumor CPT0251530009 190607_UNC32-K00270_0179_BH75W2BBXY_CAACAATG-CTTCACGG_S27_L007_R1_001.fastq.gz 3597156312 FASTQ R1_L007 unaligned CPTAC3 5044e0aa-a4ab-48ef-8dd6-4b1ff5ddb63d 8cc54f782145ed591bce3fca520c40b9 { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04168.RNA-Seq.R2_L001.A C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 190607_UNC32-K00270_0178_AH773TBBXY_TACTCATA-CCTGTGGC_S2_L001_R2_001.fastq.gz 4639537646 FASTQ R2_L001 unaligned CPTAC3 e61e8d4d-d2ba-4554-91a9-1cbb7ea9ee19 1a03c9869586670b8c973347debbf350 { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04168.RNA-Seq.R2_L007.T C3N-04168 LUAD RNA-Seq tumor CPT0251530009 190607_UNC32-K00270_0179_BH75W2BBXY_CAACAATG-CTTCACGG_S27_L007_R2_001.fastq.gz 4026174764 FASTQ R2_L007 unaligned CPTAC3 46dafde9-7d56-4a80-afa6-4f284eedeb8f 9d16535648b7d0f19eccfe081825fadc { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04168.RNA-Seq.transcriptome.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 7356583d-96e8-4dc4-9384-b7279317aff9.rna_seq.transcriptome.gdc_realn.bam 7114814464 BAM transcriptome harmonized CPTAC3 c0746123-8201-497f-a026-0b2802492267 c711c9f4ec21bac9a66c54ddda4ae667 { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04168.RNA-Seq.transcriptome.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 46bd90cb-6bba-476c-83cd-d36adbce3e92.rna_seq.transcriptome.gdc_realn.bam 8343266546 BAM transcriptome harmonized CPTAC3 f6b24f65-43c1-4159-873c-b74a66eea8b4 1393bccc9d5168e766e30aa141546aba { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor' } +C3N-04168.RNA-Seq.chimeric.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 2e075ebe-3620-4fcb-be37-196a914b4a6c.rna_seq.chimeric.gdc_realn.bam 26962421 BAM chimeric harmonized CPTAC3 6096df10-da21-4041-943a-de273e5dd5e0 e9809d8faf56278ee8cb5c18aa296ace { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04168.RNA-Seq.chimeric.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 8b251540-87e8-4ff0-a8ba-4d08c4d3b326.rna_seq.chimeric.gdc_realn.bam 32373395 BAM chimeric harmonized CPTAC3 279dd400-eb01-4517-8be6-ed2686cc531c aee21ab685160026bc7861e0cd466766 { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor' } +C3N-04168.RNA-Seq.genomic.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 2e075ebe-3620-4fcb-be37-196a914b4a6c.rna_seq.genomic.gdc_realn.bam 14196147836 BAM genomic harmonized CPTAC3 b0bb9f70-471a-4c2e-9d81-1b4b8fa3910f ab276efcad25ba31d359e7d9882b240d { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04168.RNA-Seq.genomic.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 8b251540-87e8-4ff0-a8ba-4d08c4d3b326.rna_seq.genomic.gdc_realn.bam 8060226168 BAM genomic harmonized CPTAC3 4a3881c2-1512-4d9c-b990-628a1955ccf9 b58cd8313cb597a19def9a0c92bcb168 { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor' } +C3N-04168.RNA-Seq.R1_L001.A C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 190607_UNC32-K00270_0178_AH773TBBXY_TACTCATA-CCTGTGGC_S2_L001_R1_001.fastq.gz 3998146335 FASTQ R1_L001 unaligned CPTAC3 3bc28001-7c13-427c-9cb1-a67a8d22dcab af85fed4d1dd80f7f56d6f0598230fd2 { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-04168.RNA-Seq.R1_L007.T C3N-04168 LUAD RNA-Seq tumor CPT0251530009 190607_UNC32-K00270_0179_BH75W2BBXY_CAACAATG-CTTCACGG_S27_L007_R1_001.fastq.gz 3597156312 FASTQ R1_L007 unaligned CPTAC3 5044e0aa-a4ab-48ef-8dd6-4b1ff5ddb63d 8cc54f782145ed591bce3fca520c40b9 { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-04168.RNA-Seq.R2_L001.A C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 190607_UNC32-K00270_0178_AH773TBBXY_TACTCATA-CCTGTGGC_S2_L001_R2_001.fastq.gz 4639537646 FASTQ R2_L001 unaligned CPTAC3 e61e8d4d-d2ba-4554-91a9-1cbb7ea9ee19 1a03c9869586670b8c973347debbf350 { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-04168.RNA-Seq.R2_L007.T C3N-04168 LUAD RNA-Seq tumor CPT0251530009 190607_UNC32-K00270_0179_BH75W2BBXY_CAACAATG-CTTCACGG_S27_L007_R2_001.fastq.gz 4026174764 FASTQ R2_L007 unaligned CPTAC3 46dafde9-7d56-4a80-afa6-4f284eedeb8f 9d16535648b7d0f19eccfe081825fadc { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-04168.RNA-Seq.transcriptome.A.hg38 C3N-04168 LUAD RNA-Seq tissue_normal CPT0255870009 2e075ebe-3620-4fcb-be37-196a914b4a6c.rna_seq.transcriptome.gdc_realn.bam 7948045599 BAM transcriptome harmonized CPTAC3 75ffd267-89b9-45e1-8fef-8922ba5b2518 033a21a366e35f34d581508aa4eb50b3 { 'aliquot_tag': 'ALQ_b46b051', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04168.RNA-Seq.transcriptome.T.hg38 C3N-04168 LUAD RNA-Seq tumor CPT0251530009 8b251540-87e8-4ff0-a8ba-4d08c4d3b326.rna_seq.transcriptome.gdc_realn.bam 9253029936 BAM transcriptome harmonized CPTAC3 3815b424-9ade-48c6-b1b4-ede4fbf8db1c c206a41a1f3c16b604763efe6bf7eb1b { 'aliquot_tag': 'ALQ_b617215c', 'gdc_sample_type': 'Primary Tumor' } C3N-04168.WGS.N C3N-04168 LUAD WGS blood_normal CPT0255960002 CPT0255960002.WholeGenome.RP-1303.bam 81801441893 BAM aligned CPTAC3 34d1eb6b-dfc6-4bfb-b4d5-aad2db8942b9 b938a26c528dd60f6c4cfb15591a938e { 'aliquot_tag': 'ALQ_6aa893cc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04168.WGS.N.hg38 C3N-04168 LUAD WGS blood_normal CPT0255960002 0d3002e7-e715-44ac-9774-c07ee75d5d0a_wgs_gdc_realn.bam 120071170304 BAM harmonized CPTAC3 bb82aeb6-da15-4bec-9405-137957c2cc81 e56fca9c923baaeba0d942fe89dc0bad { 'aliquot_tag': 'ALQ_6aa893cc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04168.WGS.T C3N-04168 LUAD WGS tumor CPT0251530006 CPT0251530006.WholeGenome.RP-1303.bam 66127822657 BAM aligned CPTAC3 f4cded34-8c70-4f65-b885-dacfb84c23a5 761b8972a33d3849e327659ff829a736 { 'aliquot_tag': 'ALQ_26a83ccd', 'gdc_sample_type': 'Primary Tumor' } @@ -37423,16 +39810,16 @@ C3N-04169.miRNA-Seq.A C3N-04169 LSCC miRNA-Seq tissue_normal CPT0247300009 20032 C3N-04169.miRNA-Seq.A.hg38 C3N-04169 LSCC miRNA-Seq tissue_normal CPT0247300009 e90391c1-7cf0-4a2b-a09f-06f057ee520e_mirnaseq_gdc_realn.bam 316359797 BAM harmonized CPTAC3 248b19a7-04e8-4c40-ae09-52dc35d082b6 7a1deb74b731fcf11728d84ee7c1bd47 { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04169.miRNA-Seq.T C3N-04169 LSCC miRNA-Seq tumor CPT0247290009 200224_UNC31-K00269_0267_AHC722BBXY_GCCAAT_S6_L008_R1_001.unaln.bam 269880160 BAM unaligned CPTAC3 62b32a9f-b600-4aee-a5c5-36f9e3ae9505 3835ce426a47f250fe83ea79023ec7f4 { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor' } C3N-04169.miRNA-Seq.T.hg38 C3N-04169 LSCC miRNA-Seq tumor CPT0247290009 f4fd6ccc-2285-40e9-b747-89fb171fd276_mirnaseq_gdc_realn.bam 304470695 BAM harmonized CPTAC3 03c02385-3090-405c-a365-71122d03a7f0 bc6c738c29d339d476d078169dbb56a5 { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor' } -C3N-04169.RNA-Seq.chimeric.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 040d29e5-8d9e-4039-8913-747fc436acd9.rna_seq.chimeric.gdc_realn.bam 122269977 BAM chimeric harmonized CPTAC3 e34264ef-004f-4278-a796-73c16018196d f4d931e8db37693887ecde84348885c5 { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04169.RNA-Seq.chimeric.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 c268e52d-71c7-478f-b783-9a67b7d7cead.rna_seq.chimeric.gdc_realn.bam 31539871 BAM chimeric harmonized CPTAC3 2764e558-5c4d-4dca-ba64-43f3ed332d0c d1c9b38d1907adc775adb5238bc5d926 { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor' } -C3N-04169.RNA-Seq.genomic.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 040d29e5-8d9e-4039-8913-747fc436acd9.rna_seq.genomic.gdc_realn.bam 8643860508 BAM genomic harmonized CPTAC3 5aeaa7e4-3f31-4525-9356-a314965f4293 650587642cb7b9d7868cb978b785e3e4 { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04169.RNA-Seq.genomic.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 c268e52d-71c7-478f-b783-9a67b7d7cead.rna_seq.genomic.gdc_realn.bam 7374664538 BAM genomic harmonized CPTAC3 637cbfd7-74b5-4ccc-9632-8c3e84fc6ab6 b3995fd228e86f5c995d89003226d7b2 { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor' } -C3N-04169.RNA-Seq.R1_L002.T C3N-04169 LSCC RNA-Seq tumor CPT0247290009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L002_R1_001.fastq.gz 3690580584 FASTQ R1_L002 unaligned CPTAC3 97479f3b-6532-460a-a0ab-10b872618b99 56f7a0572544ba1d5ebeb5a3485df335 { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor' } -C3N-04169.RNA-Seq.R1_L004.A C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGAATAT-TCTCATTC_S16_L004_R1_001.fastq.gz 4472375634 FASTQ R1_L004 unaligned CPTAC3 f863296d-78d7-438d-8bb2-300c515dda44 271cf5fe0aab959a36831d604620ba3c { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04169.RNA-Seq.R2_L002.T C3N-04169 LSCC RNA-Seq tumor CPT0247290009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L002_R2_001.fastq.gz 3928710079 FASTQ R2_L002 unaligned CPTAC3 0dd2c9f0-e996-43d9-bf63-520d9935099d 36cbaf7a3223820833f4e166f3c04c6f { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor' } -C3N-04169.RNA-Seq.R2_L004.A C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGAATAT-TCTCATTC_S16_L004_R2_001.fastq.gz 4663229052 FASTQ R2_L004 unaligned CPTAC3 b12930f4-cac7-4a0d-a0b8-5e76154adf3f 7bbe8b68b272eac50aca5caa701d9055 { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04169.RNA-Seq.transcriptome.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 040d29e5-8d9e-4039-8913-747fc436acd9.rna_seq.transcriptome.gdc_realn.bam 9663779247 BAM transcriptome harmonized CPTAC3 7ea2b908-1af8-4efc-b6f5-24d281b52d83 dee80a68a2c2b4fb7f58737597d685e8 { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04169.RNA-Seq.transcriptome.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 c268e52d-71c7-478f-b783-9a67b7d7cead.rna_seq.transcriptome.gdc_realn.bam 9747567682 BAM transcriptome harmonized CPTAC3 08352338-f8d8-47dc-a0f0-2cad398ab6b5 c487e5870aa3be4519d133ba92cd5fe8 { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor' } +C3N-04169.RNA-Seq.chimeric.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 848cc15c-05ab-4904-aff9-a3b3d53e6955.rna_seq.chimeric.gdc_realn.bam 122244915 BAM chimeric harmonized CPTAC3 bca20687-b0a6-456e-9214-498ca9b548e4 df585c23c6b3eeeee9002eb29c208c52 { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04169.RNA-Seq.chimeric.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 0efccc2e-c3db-4d23-ad88-ac241c2a08d2.rna_seq.chimeric.gdc_realn.bam 31540082 BAM chimeric harmonized CPTAC3 5b8624ff-3786-4570-ba9e-364509cd7f85 fc6ad8788b7046df91d82d8760b92867 { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor' } +C3N-04169.RNA-Seq.genomic.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 848cc15c-05ab-4904-aff9-a3b3d53e6955.rna_seq.genomic.gdc_realn.bam 8645510934 BAM genomic harmonized CPTAC3 ec3dcde0-f159-4484-9c63-022b40cc8282 ec7787541aa83aad058718a8c5913113 { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04169.RNA-Seq.genomic.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 0efccc2e-c3db-4d23-ad88-ac241c2a08d2.rna_seq.genomic.gdc_realn.bam 7375827388 BAM genomic harmonized CPTAC3 e510a21f-b2c4-476f-9e64-b3db08beff9b deddd65e4c48fae4d93bb4fba7593240 { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor' } +C3N-04169.RNA-Seq.R1_L002.T C3N-04169 LSCC RNA-Seq tumor CPT0247290009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L002_R1_001.fastq.gz 3690580584 FASTQ R1_L002 unaligned CPTAC3 97479f3b-6532-460a-a0ab-10b872618b99 56f7a0572544ba1d5ebeb5a3485df335 { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-04169.RNA-Seq.R1_L004.A C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGAATAT-TCTCATTC_S16_L004_R1_001.fastq.gz 4472375634 FASTQ R1_L004 unaligned CPTAC3 f863296d-78d7-438d-8bb2-300c515dda44 271cf5fe0aab959a36831d604620ba3c { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-04169.RNA-Seq.R2_L002.T C3N-04169 LSCC RNA-Seq tumor CPT0247290009 200505_UNC32-K00270_0245_AHH5FVBBXY_GCTTGTCA-GAACATAC_S6_L002_R2_001.fastq.gz 3928710079 FASTQ R2_L002 unaligned CPTAC3 0dd2c9f0-e996-43d9-bf63-520d9935099d 36cbaf7a3223820833f4e166f3c04c6f { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-04169.RNA-Seq.R2_L004.A C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 200428_UNC31-K00269_0275_AHGCJVBBXY_GTGAATAT-TCTCATTC_S16_L004_R2_001.fastq.gz 4663229052 FASTQ R2_L004 unaligned CPTAC3 b12930f4-cac7-4a0d-a0b8-5e76154adf3f 7bbe8b68b272eac50aca5caa701d9055 { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-04169.RNA-Seq.transcriptome.A.hg38 C3N-04169 LSCC RNA-Seq tissue_normal CPT0247300009 848cc15c-05ab-4904-aff9-a3b3d53e6955.rna_seq.transcriptome.gdc_realn.bam 11040351546 BAM transcriptome harmonized CPTAC3 f67143b3-f9cf-4f26-a64e-292d83efa32f 8d1c4beae589137346c1818b9da22c82 { 'aliquot_tag': 'ALQ_88948d35', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04169.RNA-Seq.transcriptome.T.hg38 C3N-04169 LSCC RNA-Seq tumor CPT0247290009 0efccc2e-c3db-4d23-ad88-ac241c2a08d2.rna_seq.transcriptome.gdc_realn.bam 11046710189 BAM transcriptome harmonized CPTAC3 d5a33594-91b5-4722-b655-217c08a43545 0cc14a8804b4890e96247b5503ba79a4 { 'aliquot_tag': 'ALQ_4ed83ce1', 'gdc_sample_type': 'Primary Tumor' } C3N-04169.WGS.N C3N-04169 LSCC WGS blood_normal CPT0247330002 CPT0247330002.WholeGenome.RP-2158.bam 24715128796 BAM aligned CPTAC3 7667bb36-7936-45d5-a1c7-7e8ec9e84a15 ad2e7db42e775726e0d41a322e9e2c88 { 'aliquot_tag': 'ALQ_58e62e6d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04169.WGS.N.hg38 C3N-04169 LSCC WGS blood_normal CPT0247330002 54e2e9f0-9524-4e55-9d51-57a4fb7cce60_wgs_gdc_realn.bam 73463581136 BAM harmonized CPTAC3 d3718f3b-2fda-4bdc-a5ad-37575d052825 44aa69a30fe82723b48e2778fb8312ba { 'aliquot_tag': 'ALQ_58e62e6d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04169.WGS.T C3N-04169 LSCC WGS tumor CPT0247290006 CPT0247290006.WholeGenome.RP-2158.bam 22090184946 BAM aligned CPTAC3 2eaa7890-61af-4285-9981-816aa9a78e64 264043421f9de8bbea648404bcb7fdbe { 'aliquot_tag': 'ALQ_de672170', 'gdc_sample_type': 'Primary Tumor' } @@ -37451,16 +39838,16 @@ C3N-04173.miRNA-Seq.A C3N-04173 LUAD miRNA-Seq tissue_normal CPT0246090009 19082 C3N-04173.miRNA-Seq.A.hg38 C3N-04173 LUAD miRNA-Seq tissue_normal CPT0246090009 24c7d702-a27f-4c1e-8f92-7ecde2495b41_mirnaseq_gdc_realn.bam 309336299 BAM harmonized CPTAC3 47fe5afe-5781-4733-babb-dd4c8883166f 14ed4f63b6e02e38ff225177f6b61e29 { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04173.miRNA-Seq.T C3N-04173 LUAD miRNA-Seq tumor CPT0246080009 190722_UNC31-K00269_0234_AH7VGTBBXY_TCCCGA_S48_L004_R1_001.unaln.bam 203996060 BAM unaligned CPTAC3 fb2df4c3-43c2-4ee7-9817-ff2eec7697c8 15c81888efbe221bc00cbd1e73c5afb5 { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor' } C3N-04173.miRNA-Seq.T.hg38 C3N-04173 LUAD miRNA-Seq tumor CPT0246080009 d418909a-5fac-464e-a6cd-a5a36a407fc5_mirnaseq_gdc_realn.bam 224627793 BAM harmonized CPTAC3 8a06e741-83b6-45c6-828b-3d23cd764674 3ddfc571720aeb933debe37d4f5ced3d { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor' } -C3N-04173.RNA-Seq.chimeric.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 13460261-b396-4d2f-b88d-93c634ee6d8c.rna_seq.chimeric.gdc_realn.bam 41951060 BAM chimeric harmonized CPTAC3 8f50687a-bb84-4f71-8ec9-a77cdc47a383 1dac77a823758422eba2a92b2fbbb255 { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04173.RNA-Seq.chimeric.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 71906f9f-4eb1-45af-9f56-89463a46750b.rna_seq.chimeric.gdc_realn.bam 18958296 BAM chimeric harmonized CPTAC3 59afd094-dcb1-48ca-996a-72fb112c51d4 9b9cce51e4651b6982a424e9be596d47 { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor' } -C3N-04173.RNA-Seq.genomic.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 13460261-b396-4d2f-b88d-93c634ee6d8c.rna_seq.genomic.gdc_realn.bam 9999354854 BAM genomic harmonized CPTAC3 599fbc92-9535-4c15-9882-cb727e0693aa 7f5d082a9aa4951083cf7b385bc77658 { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04173.RNA-Seq.genomic.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 71906f9f-4eb1-45af-9f56-89463a46750b.rna_seq.genomic.gdc_realn.bam 11487131339 BAM genomic harmonized CPTAC3 d856c306-5c36-46e0-8fc5-3336f4e9ffca b07b6272c9b94f473e7a2dd9059ebc31 { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor' } -C3N-04173.RNA-Seq.R1_L001.A C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 190621_UNC32-K00270_0184_AH7CLLBBXY_GGTACCTT-AAGACGTC_S2_L001_R1_001.fastq.gz 3749168083 FASTQ R1_L001 unaligned CPTAC3 f644207c-d22d-4d40-863f-5c827de3a073 7dacf279e4bf9be314ba09533b82dbea { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04173.RNA-Seq.R1_L003.T C3N-04173 LUAD RNA-Seq tumor CPT0246080009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCAATGCA-GGAACGTT_S12_L003_R1_001.fastq.gz 3120659218 FASTQ R1_L003 unaligned CPTAC3 1d86a491-47f9-4d87-96a6-7b455f441fa5 c6a5ebe729c338edb170d8b8c541c715 { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor' } -C3N-04173.RNA-Seq.R2_L001.A C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 190621_UNC32-K00270_0184_AH7CLLBBXY_GGTACCTT-AAGACGTC_S2_L001_R2_001.fastq.gz 4467000810 FASTQ R2_L001 unaligned CPTAC3 8ad61b6a-e091-4134-b3d0-ab5843c5bd04 a3877923bdf446cda12526773f13878e { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04173.RNA-Seq.R2_L003.T C3N-04173 LUAD RNA-Seq tumor CPT0246080009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCAATGCA-GGAACGTT_S12_L003_R2_001.fastq.gz 3527276567 FASTQ R2_L003 unaligned CPTAC3 4c01e88d-7212-4c8b-8724-4cc97209c184 becbb54929424ee36e3e34caafcd98ba { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor' } -C3N-04173.RNA-Seq.transcriptome.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 13460261-b396-4d2f-b88d-93c634ee6d8c.rna_seq.transcriptome.gdc_realn.bam 8124912592 BAM transcriptome harmonized CPTAC3 c342868d-bef0-41de-9b09-54c7c716e1e9 b040ccf8fdde66f68237c408e60dc601 { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04173.RNA-Seq.transcriptome.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 71906f9f-4eb1-45af-9f56-89463a46750b.rna_seq.transcriptome.gdc_realn.bam 7568587288 BAM transcriptome harmonized CPTAC3 c5563185-16f3-47ad-b09a-5362db5d2fa0 14ac712cf29b009cb8f992f7541c55a3 { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor' } +C3N-04173.RNA-Seq.chimeric.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 e5bc5c19-861f-4705-8a6a-3e4cd015057d.rna_seq.chimeric.gdc_realn.bam 41931808 BAM chimeric harmonized CPTAC3 c52f739a-5783-48f7-9666-ec1044a5dc0f 96ad60cc64bc2ddebf9bdef3a748bfbb { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04173.RNA-Seq.chimeric.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 2c933b04-5fb3-4500-8ee8-70fee015aa81.rna_seq.chimeric.gdc_realn.bam 18943551 BAM chimeric harmonized CPTAC3 7ef79980-0143-4894-a099-a4528f60491a 955a686bb5678cef833c3c4675918d56 { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor' } +C3N-04173.RNA-Seq.genomic.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 e5bc5c19-861f-4705-8a6a-3e4cd015057d.rna_seq.genomic.gdc_realn.bam 10000547612 BAM genomic harmonized CPTAC3 a01db665-d90b-449d-94e3-1feaf0a834ca 85109c19e82605e1f1392b35bd6cee5b { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04173.RNA-Seq.genomic.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 2c933b04-5fb3-4500-8ee8-70fee015aa81.rna_seq.genomic.gdc_realn.bam 11488546265 BAM genomic harmonized CPTAC3 4440b71e-5ec6-4c4e-aa6a-13304fff7ae1 65ad2f5259ca342110242c114365d46f { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor' } +C3N-04173.RNA-Seq.R1_L001.A C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 190621_UNC32-K00270_0184_AH7CLLBBXY_GGTACCTT-AAGACGTC_S2_L001_R1_001.fastq.gz 3749168083 FASTQ R1_L001 unaligned CPTAC3 f644207c-d22d-4d40-863f-5c827de3a073 7dacf279e4bf9be314ba09533b82dbea { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-04173.RNA-Seq.R1_L003.T C3N-04173 LUAD RNA-Seq tumor CPT0246080009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCAATGCA-GGAACGTT_S12_L003_R1_001.fastq.gz 3120659218 FASTQ R1_L003 unaligned CPTAC3 1d86a491-47f9-4d87-96a6-7b455f441fa5 c6a5ebe729c338edb170d8b8c541c715 { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-04173.RNA-Seq.R2_L001.A C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 190621_UNC32-K00270_0184_AH7CLLBBXY_GGTACCTT-AAGACGTC_S2_L001_R2_001.fastq.gz 4467000810 FASTQ R2_L001 unaligned CPTAC3 8ad61b6a-e091-4134-b3d0-ab5843c5bd04 a3877923bdf446cda12526773f13878e { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-04173.RNA-Seq.R2_L003.T C3N-04173 LUAD RNA-Seq tumor CPT0246080009 190604_UNC32-K00270_0177_AH7F5VBBXY_GCAATGCA-GGAACGTT_S12_L003_R2_001.fastq.gz 3527276567 FASTQ R2_L003 unaligned CPTAC3 4c01e88d-7212-4c8b-8724-4cc97209c184 becbb54929424ee36e3e34caafcd98ba { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-04173.RNA-Seq.transcriptome.A.hg38 C3N-04173 LUAD RNA-Seq tissue_normal CPT0246090009 e5bc5c19-861f-4705-8a6a-3e4cd015057d.rna_seq.transcriptome.gdc_realn.bam 9196387903 BAM transcriptome harmonized CPTAC3 6a7adb32-b4ef-4969-b6f7-a9b225576e4c 5037106d3f708dd5121da81a10e0a292 { 'aliquot_tag': 'ALQ_a567965e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04173.RNA-Seq.transcriptome.T.hg38 C3N-04173 LUAD RNA-Seq tumor CPT0246080009 2c933b04-5fb3-4500-8ee8-70fee015aa81.rna_seq.transcriptome.gdc_realn.bam 8348042887 BAM transcriptome harmonized CPTAC3 925f55c3-00d1-429a-a41f-129b68f80f3c a71b9161e6d20100c55afdf882605ff3 { 'aliquot_tag': 'ALQ_9807bfee', 'gdc_sample_type': 'Primary Tumor' } C3N-04173.WGS.N C3N-04173 LUAD WGS blood_normal CPT0246120002 CPT0246120002.WholeGenome.RP-1303.bam 75179611230 BAM aligned CPTAC3 c856049e-22e9-48f1-a62c-3ea21743b1b1 40aeb5b4e1600cf18289163d6e59ccbc { 'aliquot_tag': 'ALQ_8e39ad62', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04173.WGS.N.hg38 C3N-04173 LUAD WGS blood_normal CPT0246120002 298cc0c8-3f3f-4aa4-8e65-1ea7069ce7e9_wgs_gdc_realn.bam 110496917927 BAM harmonized CPTAC3 3ad93279-c460-4e39-8791-0e83339a9121 55283e8bab647b51af71ddd4b7832cdd { 'aliquot_tag': 'ALQ_8e39ad62', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04173.WGS.T C3N-04173 LUAD WGS tumor CPT0246080006 CPT0246080006.WholeGenome.RP-1303.bam 75419405100 BAM aligned CPTAC3 50ca4688-b5f5-420f-9e1d-233a43522022 327a90fc13c9000a7f950a5f22b87ce3 { 'aliquot_tag': 'ALQ_8b8a27f', 'gdc_sample_type': 'Primary Tumor' } @@ -37477,16 +39864,16 @@ C3N-04176.miRNA-Seq.A C3N-04176 LUAD miRNA-Seq tissue_normal CPT0247400006 19072 C3N-04176.miRNA-Seq.A.hg38 C3N-04176 LUAD miRNA-Seq tissue_normal CPT0247400006 c9a7d572-6de8-4cca-875e-74a7340ddf74_mirnaseq_gdc_realn.bam 218949382 BAM harmonized CPTAC3 308f5c5c-da3d-48cf-a5b7-3052c0fbada2 5021a17ae16fa598d24a708d1d960b3a { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04176.miRNA-Seq.T C3N-04176 LUAD miRNA-Seq tumor CPT0247390009 190722_UNC31-K00269_0234_AH7VGTBBXY_TACAGC_S36_L004_R1_001.unaln.bam 205775996 BAM unaligned CPTAC3 f40bc171-02e5-4c82-8f10-22a8068866c3 acc0e70e408ca0ecc60426fc0926c8da { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor' } C3N-04176.miRNA-Seq.T.hg38 C3N-04176 LUAD miRNA-Seq tumor CPT0247390009 a922aa7c-f74b-4f49-a01c-cb7415264a2c_mirnaseq_gdc_realn.bam 227355761 BAM harmonized CPTAC3 3a3a0188-3691-4a35-aae9-9a04fc45549a 52e394cac6dc09020b6c2bb5f4e79a9b { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor' } -C3N-04176.RNA-Seq.chimeric.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 b0a54762-ee33-4124-b6de-10bc9ce30606.rna_seq.chimeric.gdc_realn.bam 39032129 BAM chimeric harmonized CPTAC3 745c1e4e-86ea-45f6-a65e-6d62110ef78b f28c3fe05a30cb9edfbb9c5813c576da { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04176.RNA-Seq.chimeric.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 82eb024e-b57a-49a6-9458-dc1d7239cdd3.rna_seq.chimeric.gdc_realn.bam 30825640 BAM chimeric harmonized CPTAC3 363d77b9-3f69-4f96-a429-0ac7f407b4b3 1a1715520f0122180972c4468e0c0a70 { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor' } -C3N-04176.RNA-Seq.genomic.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 b0a54762-ee33-4124-b6de-10bc9ce30606.rna_seq.genomic.gdc_realn.bam 17164022933 BAM genomic harmonized CPTAC3 1a947dc4-37c6-431f-8bc3-e769edc7fcf5 fd9f8f5e6b6c947c0ac72e9b428d26dd { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04176.RNA-Seq.genomic.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 82eb024e-b57a-49a6-9458-dc1d7239cdd3.rna_seq.genomic.gdc_realn.bam 13942394148 BAM genomic harmonized CPTAC3 b491b310-a42a-4490-a476-7423bed099f1 fccf3e84a73d72d97121048442903205 { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor' } -C3N-04176.RNA-Seq.R1_L004.T C3N-04176 LUAD RNA-Seq tumor CPT0247390009 190604_UNC32-K00270_0177_AH7F5VBBXY_AAGATACT-ACTTACAT_S13_L004_R1_001.fastq.gz 4430014065 FASTQ R1_L004 unaligned CPTAC3 e6ff39a8-6d38-4ec9-a9e5-ff056ddc4fd2 62c92689c1545f444073cf9dfc969825 { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor' } -C3N-04176.RNA-Seq.R1_L005.A C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 190607_UNC32-K00270_0179_BH75W2BBXY_TGGATCGA-GTGCGATA_S20_L005_R1_001.fastq.gz 5543734528 FASTQ R1_L005 unaligned CPTAC3 9009eb6a-1e4e-4655-a421-422064664c48 f3f029ed271f4be4755403316b688ecd { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04176.RNA-Seq.R2_L004.T C3N-04176 LUAD RNA-Seq tumor CPT0247390009 190604_UNC32-K00270_0177_AH7F5VBBXY_AAGATACT-ACTTACAT_S13_L004_R2_001.fastq.gz 4975836044 FASTQ R2_L004 unaligned CPTAC3 2d860b31-bf4a-4281-8d83-caa955b6c03b 187867ff8dae06feba67eb0889dd562e { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor' } -C3N-04176.RNA-Seq.R2_L005.A C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 190607_UNC32-K00270_0179_BH75W2BBXY_TGGATCGA-GTGCGATA_S20_L005_R2_001.fastq.gz 6230360073 FASTQ R2_L005 unaligned CPTAC3 f8232df5-1cb0-44a3-972b-3466d16438f4 e1d3a74b3cba26e19979c9a176c77e08 { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04176.RNA-Seq.transcriptome.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 b0a54762-ee33-4124-b6de-10bc9ce30606.rna_seq.transcriptome.gdc_realn.bam 11098417522 BAM transcriptome harmonized CPTAC3 d21c3b67-fc14-4f35-ac16-012458ea7f44 c9eb8f7e658d2e86811ba2d2daa81335 { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04176.RNA-Seq.transcriptome.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 82eb024e-b57a-49a6-9458-dc1d7239cdd3.rna_seq.transcriptome.gdc_realn.bam 9319884292 BAM transcriptome harmonized CPTAC3 8227573d-1f6a-46af-a69c-4ec7b0616d3c 4a0a674f1526920e3ff2b0f69f6c0abf { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor' } +C3N-04176.RNA-Seq.chimeric.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 8af7bef7-0923-4431-b7e0-9cecbb7579fa.rna_seq.chimeric.gdc_realn.bam 39019042 BAM chimeric harmonized CPTAC3 4d91648e-0031-46ee-88c5-2ece72f9fbdf 76ab2a0757697dd4dd6028377b0036f3 { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04176.RNA-Seq.chimeric.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 4c4dea45-471e-4008-a99c-f438a0cc2e9f.rna_seq.chimeric.gdc_realn.bam 30826164 BAM chimeric harmonized CPTAC3 3c7f3d14-70e7-457e-8e1e-1da2c0f85894 a33ef0e721d86efd2d6312c34aea526f { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor' } +C3N-04176.RNA-Seq.genomic.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 8af7bef7-0923-4431-b7e0-9cecbb7579fa.rna_seq.genomic.gdc_realn.bam 17164577058 BAM genomic harmonized CPTAC3 0f3cb140-19c5-4591-b35f-c67aaf833944 c2f9c2556d46a89e56daf97d2c0d5e87 { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04176.RNA-Seq.genomic.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 4c4dea45-471e-4008-a99c-f438a0cc2e9f.rna_seq.genomic.gdc_realn.bam 13943763689 BAM genomic harmonized CPTAC3 296355d6-3ef8-412f-8954-a04e74ea33d9 a61fe86c06ae7584314ee1c5a491b528 { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor' } +C3N-04176.RNA-Seq.R1_L004.T C3N-04176 LUAD RNA-Seq tumor CPT0247390009 190604_UNC32-K00270_0177_AH7F5VBBXY_AAGATACT-ACTTACAT_S13_L004_R1_001.fastq.gz 4430014065 FASTQ R1_L004 unaligned CPTAC3 e6ff39a8-6d38-4ec9-a9e5-ff056ddc4fd2 62c92689c1545f444073cf9dfc969825 { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-04176.RNA-Seq.R1_L005.A C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 190607_UNC32-K00270_0179_BH75W2BBXY_TGGATCGA-GTGCGATA_S20_L005_R1_001.fastq.gz 5543734528 FASTQ R1_L005 unaligned CPTAC3 9009eb6a-1e4e-4655-a421-422064664c48 f3f029ed271f4be4755403316b688ecd { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-04176.RNA-Seq.R2_L004.T C3N-04176 LUAD RNA-Seq tumor CPT0247390009 190604_UNC32-K00270_0177_AH7F5VBBXY_AAGATACT-ACTTACAT_S13_L004_R2_001.fastq.gz 4975836044 FASTQ R2_L004 unaligned CPTAC3 2d860b31-bf4a-4281-8d83-caa955b6c03b 187867ff8dae06feba67eb0889dd562e { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-04176.RNA-Seq.R2_L005.A C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 190607_UNC32-K00270_0179_BH75W2BBXY_TGGATCGA-GTGCGATA_S20_L005_R2_001.fastq.gz 6230360073 FASTQ R2_L005 unaligned CPTAC3 f8232df5-1cb0-44a3-972b-3466d16438f4 e1d3a74b3cba26e19979c9a176c77e08 { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-04176.RNA-Seq.transcriptome.A.hg38 C3N-04176 LUAD RNA-Seq tissue_normal CPT0247400006 8af7bef7-0923-4431-b7e0-9cecbb7579fa.rna_seq.transcriptome.gdc_realn.bam 12373181591 BAM transcriptome harmonized CPTAC3 80ca4e7a-e74f-4db0-a534-14d431537aa9 6f36128d5654a39a988635f6de47f31f { 'aliquot_tag': 'ALQ_52ea01c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04176.RNA-Seq.transcriptome.T.hg38 C3N-04176 LUAD RNA-Seq tumor CPT0247390009 4c4dea45-471e-4008-a99c-f438a0cc2e9f.rna_seq.transcriptome.gdc_realn.bam 10554142558 BAM transcriptome harmonized CPTAC3 1565f04a-d6ad-41e7-bf03-760a8413dbaa e8e40273de6df663083dab7b3fc97313 { 'aliquot_tag': 'ALQ_8584ef44', 'gdc_sample_type': 'Primary Tumor' } C3N-04176.WGS.N C3N-04176 LUAD WGS blood_normal CPT0247790002 CPT0247790002.WholeGenome.RP-1303.bam 70914497366 BAM aligned CPTAC3 c7311b42-94d5-45d4-91dc-ff272aa9a897 4c50213e9af7087e1c0331685a853bf6 { 'aliquot_tag': 'ALQ_89c774da', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04176.WGS.N.hg38 C3N-04176 LUAD WGS blood_normal CPT0247790002 960a6dc6-8f50-404f-ace3-e26c2c0218d1_wgs_gdc_realn.bam 105503865522 BAM harmonized CPTAC3 8738f461-b775-4a75-a555-003c1e83b643 8c83007762a9af9afb065a4764b8b71a { 'aliquot_tag': 'ALQ_89c774da', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04176.WGS.T C3N-04176 LUAD WGS tumor CPT0247390006 CPT0247390006.WholeGenome.RP-1303.bam 63557063063 BAM aligned CPTAC3 f1d13016-f7d1-4e45-a9d0-227b5586d52d 8091b2b6fa056990e99a03517650e985 { 'aliquot_tag': 'ALQ_153bf2d5', 'gdc_sample_type': 'Primary Tumor' } @@ -37503,16 +39890,16 @@ C3N-04180.miRNA-Seq.A C3N-04180 LUAD miRNA-Seq tissue_normal CPT0247810009 19071 C3N-04180.miRNA-Seq.A.hg38 C3N-04180 LUAD miRNA-Seq tissue_normal CPT0247810009 bf41ea70-1640-4704-9415-6231dc23bf25_mirnaseq_gdc_realn.bam 300303067 BAM harmonized CPTAC3 754bab63-e922-489b-bf84-f474f7e88bb3 be0bf227ab5a9f002e3eedba12922c24 { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04180.miRNA-Seq.T C3N-04180 LUAD miRNA-Seq tumor CPT0247800009 190722_UNC31-K00269_0234_AH7VGTBBXY_TATAAT_S37_L004_R1_001.unaln.bam 197664837 BAM unaligned CPTAC3 8a7b9926-84f8-4842-9764-d0f4b95b3756 505ee37ec798d31e161ee4c659d06036 { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor' } C3N-04180.miRNA-Seq.T.hg38 C3N-04180 LUAD miRNA-Seq tumor CPT0247800009 966e5511-bfd2-47ba-8639-298f759905f2_mirnaseq_gdc_realn.bam 219837464 BAM harmonized CPTAC3 3f9e3821-7a68-46e3-9a1b-46f178d96697 bc2a413ff7a8c26e59d384cffd591ddc { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04180.RNA-Seq.chimeric.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 c3f43fac-e73a-4510-b8b3-71998f51c260.rna_seq.chimeric.gdc_realn.bam 34734467 BAM chimeric harmonized CPTAC3 6390ffd3-b8bc-4bff-b8da-24769040aa31 c71896d20d60f32578ea3e8fdc2ed33a { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04180.RNA-Seq.chimeric.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 a9184a04-4f5c-43c5-bb8a-d2ad6794c9ea.rna_seq.chimeric.gdc_realn.bam 27075148 BAM chimeric harmonized CPTAC3 aa27a298-ba97-46f4-9ca2-ddd00e2d60c8 e6e127a7f33e86979a22771400a25ef9 { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04180.RNA-Seq.genomic.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 c3f43fac-e73a-4510-b8b3-71998f51c260.rna_seq.genomic.gdc_realn.bam 8356905093 BAM genomic harmonized CPTAC3 7e35d890-2704-4c1f-84a3-2290e7f04ed2 3c0a084bfb4cc4a473b27241ad6b5635 { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04180.RNA-Seq.genomic.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 a9184a04-4f5c-43c5-bb8a-d2ad6794c9ea.rna_seq.genomic.gdc_realn.bam 12126792793 BAM genomic harmonized CPTAC3 5c94086b-dc30-4ca7-ba9e-80254d4cd69a 72a9feb461dc30077521e60583f8d1d2 { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04180.RNA-Seq.R1_L002.A C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 190621_UNC32-K00270_0184_AH7CLLBBXY_ATGTAAGT-ACTCTATG_S7_L002_R1_001.fastq.gz 3210841174 FASTQ R1_L002 unaligned CPTAC3 c76d540f-e83e-4512-bbb3-88a52442ee0e f8187ac834865b29a4283c30c6fe67f5 { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04180.RNA-Seq.R1_L004.T C3N-04180 LUAD RNA-Seq tumor CPT0247800009 190604_UNC32-K00270_0177_AH7F5VBBXY_GGAGCGTC-GTCCGTGC_S16_L004_R1_001.fastq.gz 3688431524 FASTQ R1_L004 unaligned CPTAC3 079aa97e-3ca0-4252-a5c2-dc08802378f6 b6629f6bdd3c5d57dc0e711494dc06e9 { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04180.RNA-Seq.R2_L002.A C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 190621_UNC32-K00270_0184_AH7CLLBBXY_ATGTAAGT-ACTCTATG_S7_L002_R2_001.fastq.gz 3689260719 FASTQ R2_L002 unaligned CPTAC3 f8858c65-c35d-420a-a449-4354faa801a5 c99eca9275182382b679e8dd55973fb0 { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04180.RNA-Seq.R2_L004.T C3N-04180 LUAD RNA-Seq tumor CPT0247800009 190604_UNC32-K00270_0177_AH7F5VBBXY_GGAGCGTC-GTCCGTGC_S16_L004_R2_001.fastq.gz 4310951410 FASTQ R2_L004 unaligned CPTAC3 cb9c2592-b706-4c4f-a395-3c5eefbab73a 26e1e9ed8ad95e1c47c9468f746c9b4a { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor' } -C3N-04180.RNA-Seq.transcriptome.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 c3f43fac-e73a-4510-b8b3-71998f51c260.rna_seq.transcriptome.gdc_realn.bam 6811097407 BAM transcriptome harmonized CPTAC3 c4731b68-ad99-4b90-b07e-71e042c7c094 c12202497ba00daa3a4265a1a1376ed3 { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04180.RNA-Seq.transcriptome.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 a9184a04-4f5c-43c5-bb8a-d2ad6794c9ea.rna_seq.transcriptome.gdc_realn.bam 9453578013 BAM transcriptome harmonized CPTAC3 42a973a8-d890-4296-b7b9-c84467df47d0 085bb80d4824f215e4b9aeac2c265720 { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor' } +C3N-04180.RNA-Seq.chimeric.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 ccd9209a-18c2-406b-aae6-e5e0144cf434.rna_seq.chimeric.gdc_realn.bam 34723369 BAM chimeric harmonized CPTAC3 93c1ecc2-3afc-43c1-a125-4289e894e858 9d7aada4f823a0ba8e0cfc881ad87aad { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04180.RNA-Seq.chimeric.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 18203930-8da9-421a-b98c-65c410da5497.rna_seq.chimeric.gdc_realn.bam 27066093 BAM chimeric harmonized CPTAC3 add3c2c4-cb1a-4b6a-b158-12070a90e86a 74973575786328a868b09a980496b69c { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor' } +C3N-04180.RNA-Seq.genomic.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 ccd9209a-18c2-406b-aae6-e5e0144cf434.rna_seq.genomic.gdc_realn.bam 8358142306 BAM genomic harmonized CPTAC3 b74c1fb8-caa7-4699-8e8a-f75ccf4751f4 f90ccc6bde9bc7dc12e3a1662ffb11ce { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04180.RNA-Seq.genomic.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 18203930-8da9-421a-b98c-65c410da5497.rna_seq.genomic.gdc_realn.bam 12127235623 BAM genomic harmonized CPTAC3 fde35541-b3cb-4e9c-bbdc-a289ee0500f3 6e23351b46f52e1d89992653c1b92a19 { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor' } +C3N-04180.RNA-Seq.R1_L002.A C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 190621_UNC32-K00270_0184_AH7CLLBBXY_ATGTAAGT-ACTCTATG_S7_L002_R1_001.fastq.gz 3210841174 FASTQ R1_L002 unaligned CPTAC3 c76d540f-e83e-4512-bbb3-88a52442ee0e f8187ac834865b29a4283c30c6fe67f5 { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-04180.RNA-Seq.R1_L004.T C3N-04180 LUAD RNA-Seq tumor CPT0247800009 190604_UNC32-K00270_0177_AH7F5VBBXY_GGAGCGTC-GTCCGTGC_S16_L004_R1_001.fastq.gz 3688431524 FASTQ R1_L004 unaligned CPTAC3 079aa97e-3ca0-4252-a5c2-dc08802378f6 b6629f6bdd3c5d57dc0e711494dc06e9 { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-04180.RNA-Seq.R2_L002.A C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 190621_UNC32-K00270_0184_AH7CLLBBXY_ATGTAAGT-ACTCTATG_S7_L002_R2_001.fastq.gz 3689260719 FASTQ R2_L002 unaligned CPTAC3 f8858c65-c35d-420a-a449-4354faa801a5 c99eca9275182382b679e8dd55973fb0 { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-04180.RNA-Seq.R2_L004.T C3N-04180 LUAD RNA-Seq tumor CPT0247800009 190604_UNC32-K00270_0177_AH7F5VBBXY_GGAGCGTC-GTCCGTGC_S16_L004_R2_001.fastq.gz 4310951410 FASTQ R2_L004 unaligned CPTAC3 cb9c2592-b706-4c4f-a395-3c5eefbab73a 26e1e9ed8ad95e1c47c9468f746c9b4a { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-04180.RNA-Seq.transcriptome.A.hg38 C3N-04180 LUAD RNA-Seq tissue_normal CPT0247810009 ccd9209a-18c2-406b-aae6-e5e0144cf434.rna_seq.transcriptome.gdc_realn.bam 7719051864 BAM transcriptome harmonized CPTAC3 fa113753-ba3c-4ee6-bda4-b136732a6a74 fdd0eb71fc5f9972ccce1bd28206bce0 { 'aliquot_tag': 'ALQ_df335446', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04180.RNA-Seq.transcriptome.T.hg38 C3N-04180 LUAD RNA-Seq tumor CPT0247800009 18203930-8da9-421a-b98c-65c410da5497.rna_seq.transcriptome.gdc_realn.bam 10656251697 BAM transcriptome harmonized CPTAC3 428c8369-3f90-4bf3-b7a7-9e49e6a62130 7a15171a975af2c8e7314f47ac469f98 { 'aliquot_tag': 'ALQ_e2537df6', 'gdc_sample_type': 'Primary Tumor' } C3N-04180.WGS.N C3N-04180 LUAD WGS blood_normal CPT0247840002 CPT0247840002.WholeGenome.RP-1303.bam 72897946606 BAM aligned CPTAC3 7da2864d-4f96-47c7-939a-25b582df183f bc70c909f87457c4c6aceb0fdfd4a8d3 { 'aliquot_tag': 'ALQ_800102be', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04180.WGS.N.hg38 C3N-04180 LUAD WGS blood_normal CPT0247840002 c1986a60-76f3-47a3-959e-a5e616741443_wgs_gdc_realn.bam 105901682399 BAM harmonized CPTAC3 02584fea-efe1-4648-8e01-7f337a32c2d6 e9ededfb019fc399cacaf871fb6c563d { 'aliquot_tag': 'ALQ_800102be', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04180.WGS.T C3N-04180 LUAD WGS tumor CPT0247800006 CPT0247800006.WholeGenome.RP-1303.bam 58623111455 BAM aligned CPTAC3 46dca979-c9d5-41cf-be09-d7a748a53735 9c1f056b10b098f200aa8d108ce70f59 { 'aliquot_tag': 'ALQ_72ec6067', 'gdc_sample_type': 'Primary Tumor' } @@ -37528,9 +39915,9 @@ C3N-04273.MethArray.Red.T C3N-04273 HNSCC Methylation Array tumor CPT0245230010 C3N-04273.miRNA-Seq.T C3N-04273 HNSCC miRNA-Seq tumor CPT0245230007 190228_UNC32-K00270_0151_AHYLY3BBXX_CGTACG_S22_L006_R1_001.unaln.bam 217298749 BAM unaligned CPTAC3 4ca9688f-dac7-41a7-9aa7-1479008e1668 41ea18c5647e675bb1720441003e42c4 { 'aliquot_tag': 'ALQ_744f186e', 'gdc_sample_type': 'Primary Tumor' } C3N-04273.miRNA-Seq.T.hg38 C3N-04273 HNSCC miRNA-Seq tumor CPT0245230007 ffc63a82-f0bb-4ea4-87ed-078abb7f673c_mirnaseq_gdc_realn.bam 247110656 BAM harmonized CPTAC3 ecdc0c13-801c-4dec-a9db-06373376f611 578791f2194c0179dcce90b0a73c8752 { 'aliquot_tag': 'ALQ_744f186e', 'gdc_sample_type': 'Primary Tumor' } C3N-04273.RNA-Seq.chimeric.T.hg38 C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 f8d148a6-90d6-4dc0-b15c-faa619cc56d7.rna_seq.chimeric.gdc_realn.bam 35816179 BAM chimeric harmonized CPTAC3 80dcf74b-4e0b-4e80-80f5-90439e6067cd 6755b454dc92180fa40f1e6cb83e5f82 { 'aliquot_tag': 'ALQ_744f186e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04273.RNA-Seq.genomic.T.hg38 C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 f8d148a6-90d6-4dc0-b15c-faa619cc56d7.rna_seq.genomic.gdc_realn.bam 7672545062 BAM genomic harmonized CPTAC3 de41901d-0647-4ce5-a429-39008092891e 7eca67d272a74c67906e10694267a9bd { 'aliquot_tag': 'ALQ_744f186e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04273.RNA-Seq.R1_L008.T C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 190411_UNC31-K00269_0208_BH3W3KBBXY_AACGTTCC-GGAGTACT_S35_L008_R1_001.fastq.gz 3540715562 FASTQ R1_L008 unaligned CPTAC3 efe2a881-2ece-4dad-8c4a-593a18039330 dd3008e2862adde61773c19baff1c5e5 { 'aliquot_tag': 'ALQ_744f186e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04273.RNA-Seq.R2_L008.T C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 190411_UNC31-K00269_0208_BH3W3KBBXY_AACGTTCC-GGAGTACT_S35_L008_R2_001.fastq.gz 4041339544 FASTQ R2_L008 unaligned CPTAC3 7894fce1-8f49-40bd-a1be-8245cd4eea40 d01c5d9a788825e284111a5786a4220a { 'aliquot_tag': 'ALQ_744f186e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04273.RNA-Seq.genomic.T.hg38 C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 f8d148a6-90d6-4dc0-b15c-faa619cc56d7.rna_seq.genomic.gdc_realn.bam 7672545062 BAM genomic harmonized CPTAC3 966e623a-880d-4cf3-a8a1-822e9f70b051 7eca67d272a74c67906e10694267a9bd { 'aliquot_tag': 'ALQ_744f186e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04273.RNA-Seq.R1_L008.T C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 190411_UNC31-K00269_0208_BH3W3KBBXY_AACGTTCC-GGAGTACT_S35_L008_R1_001.fastq.gz 3540715562 FASTQ R1_L008 unaligned CPTAC3 efe2a881-2ece-4dad-8c4a-593a18039330 dd3008e2862adde61773c19baff1c5e5 { 'aliquot_tag': 'ALQ_744f186e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-04273.RNA-Seq.R2_L008.T C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 190411_UNC31-K00269_0208_BH3W3KBBXY_AACGTTCC-GGAGTACT_S35_L008_R2_001.fastq.gz 4041339544 FASTQ R2_L008 unaligned CPTAC3 7894fce1-8f49-40bd-a1be-8245cd4eea40 d01c5d9a788825e284111a5786a4220a { 'aliquot_tag': 'ALQ_744f186e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-04273.RNA-Seq.transcriptome.T.hg38 C3N-04273 HNSCC RNA-Seq tumor CPT0245230007 f8d148a6-90d6-4dc0-b15c-faa619cc56d7.rna_seq.transcriptome.gdc_realn.bam 8649353055 BAM transcriptome harmonized CPTAC3 b3c0cd57-58c0-4fe6-a422-9c2e6773e0e2 3232c80a1df56c2ccd6bdf4fe892113e { 'aliquot_tag': 'ALQ_744f186e', 'gdc_sample_type': 'Primary Tumor' } C3N-04273.WGS.N C3N-04273 HNSCC WGS blood_normal CPT0245290002 CPT0245290002.WholeGenome.RP-1303.bam 78492721832 BAM aligned CPTAC3 28b5661b-a20f-4897-beb4-68bc631be9a8 b42f739ee7f2c282279fb6b5f8546d51 { 'aliquot_tag': 'ALQ_4e95f440', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04273.WGS.N.hg38 C3N-04273 HNSCC WGS blood_normal CPT0245290002 431aadcb-c498-4e4a-8684-1e78ad4edfc8_wgs_gdc_realn.bam 112427816978 BAM harmonized CPTAC3 b5d8733d-85e6-41cf-8bcb-45b0cc18b693 1c0707b57031e7584f0f8c000c24ab67 { 'aliquot_tag': 'ALQ_4e95f440', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37545,9 +39932,9 @@ C3N-04275.MethArray.Red.T C3N-04275 HNSCC Methylation Array tumor CPT0245300006 C3N-04275.miRNA-Seq.T C3N-04275 HNSCC miRNA-Seq tumor CPT0245300009 190228_UNC32-K00270_0151_AHYLY3BBXX_CTCAGA_S40_L004_R1_001.unaln.bam 224241674 BAM unaligned CPTAC3 7db78c63-06dd-473a-b4b4-85ac3830ceab 7cb4545822183f81e254995eae599537 { 'aliquot_tag': 'ALQ_1f0b9c1c', 'gdc_sample_type': 'Primary Tumor' } C3N-04275.miRNA-Seq.T.hg38 C3N-04275 HNSCC miRNA-Seq tumor CPT0245300009 8d82c1f9-5395-49c3-a71e-2524f9843a69_mirnaseq_gdc_realn.bam 249970448 BAM harmonized CPTAC3 e4892bdf-6697-484e-9f80-a221c94f1ec5 18beefa2bf3b717a96ec5439d6df1dd3 { 'aliquot_tag': 'ALQ_1f0b9c1c', 'gdc_sample_type': 'Primary Tumor' } C3N-04275.RNA-Seq.chimeric.T.hg38 C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 08344e57-0163-468c-9763-548e134ea91a.rna_seq.chimeric.gdc_realn.bam 136059173 BAM chimeric harmonized CPTAC3 078eab4b-de93-47a9-8d65-28a91e30f05a 821bf57b7fefa7734f1999ae425e6ee9 { 'aliquot_tag': 'ALQ_1f0b9c1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04275.RNA-Seq.genomic.T.hg38 C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 08344e57-0163-468c-9763-548e134ea91a.rna_seq.genomic.gdc_realn.bam 9738467964 BAM genomic harmonized CPTAC3 2f03a918-43d5-4472-bbed-f93b20f02e4a 5e8dcfaf39e771e9bd54a9816f478d27 { 'aliquot_tag': 'ALQ_1f0b9c1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04275.RNA-Seq.R1_L001.T C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGTCC_S2_L001_R1_001.fastq.gz 4699080068 FASTQ R1_L001 unaligned CPTAC3 b85da967-79cd-45d7-87ba-33b89769eccb f72accf6229c40199e9476cd5c4f0102 { 'aliquot_tag': 'ALQ_1f0b9c1c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04275.RNA-Seq.R2_L001.T C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGTCC_S2_L001_R2_001.fastq.gz 4633503877 FASTQ R2_L001 unaligned CPTAC3 e00fecd0-b271-4618-91a9-35e85f2b8a66 24508f1233e069dd74c8224a02f6c8e4 { 'aliquot_tag': 'ALQ_1f0b9c1c', 'gdc_sample_type': 'Primary Tumor' } +C3N-04275.RNA-Seq.genomic.T.hg38 C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 08344e57-0163-468c-9763-548e134ea91a.rna_seq.genomic.gdc_realn.bam 9738467964 BAM genomic harmonized CPTAC3 16f4b7a1-00fa-4089-8bff-922f32c6cce2 5e8dcfaf39e771e9bd54a9816f478d27 { 'aliquot_tag': 'ALQ_1f0b9c1c', 'gdc_sample_type': 'Primary Tumor' } +C3N-04275.RNA-Seq.R1_L001.T C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGTCC_S2_L001_R1_001.fastq.gz 4699080068 FASTQ R1_L001 unaligned CPTAC3 b85da967-79cd-45d7-87ba-33b89769eccb f72accf6229c40199e9476cd5c4f0102 { 'aliquot_tag': 'ALQ_1f0b9c1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-04275.RNA-Seq.R2_L001.T C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 190411_UNC31-K00269_0208_BH3W3KBBXY_CCGTCC_S2_L001_R2_001.fastq.gz 4633503877 FASTQ R2_L001 unaligned CPTAC3 e00fecd0-b271-4618-91a9-35e85f2b8a66 24508f1233e069dd74c8224a02f6c8e4 { 'aliquot_tag': 'ALQ_1f0b9c1c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-04275.RNA-Seq.transcriptome.T.hg38 C3N-04275 HNSCC RNA-Seq tumor CPT0245300009 08344e57-0163-468c-9763-548e134ea91a.rna_seq.transcriptome.gdc_realn.bam 11156856445 BAM transcriptome harmonized CPTAC3 3fb6604e-ba69-48f6-92c6-3b8a7b74e566 3487535d811331809d9aa0741bea8ac4 { 'aliquot_tag': 'ALQ_1f0b9c1c', 'gdc_sample_type': 'Primary Tumor' } C3N-04275.WGS.N C3N-04275 HNSCC WGS blood_normal CPT0245340002 CPT0245340002.WholeGenome.RP-1303.bam 72376442414 BAM aligned CPTAC3 5dfa26fa-9e3a-4d58-b97e-5e09231ae4c9 ab93f198bcdc33384c4d2d7ca9a42c41 { 'aliquot_tag': 'ALQ_7d59e354', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04275.WGS.N.hg38 C3N-04275 HNSCC WGS blood_normal CPT0245340002 599c5049-fd3c-4556-983a-f53a845dca2b_wgs_gdc_realn.bam 110480523844 BAM harmonized CPTAC3 99b26ff9-3e31-4920-9ea0-ccb2ab7cc9f4 b8fcf779efb2497d3b6e2d7ac3f8fb0f { 'aliquot_tag': 'ALQ_7d59e354', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37562,9 +39949,9 @@ C3N-04276.MethArray.Red.T C3N-04276 HNSCC Methylation Array tumor CPT0245350012 C3N-04276.miRNA-Seq.T C3N-04276 HNSCC miRNA-Seq tumor CPT0245350009 190228_UNC32-K00270_0151_AHYLY3BBXX_GACGAC_S41_L004_R1_001.unaln.bam 250283338 BAM unaligned CPTAC3 a243eb71-bdfe-4278-82f7-ecbe6fc11e63 9fd0244c8569c43a4ff7946692b4c7fd { 'aliquot_tag': 'ALQ_d7eb136c', 'gdc_sample_type': 'Primary Tumor' } C3N-04276.miRNA-Seq.T.hg38 C3N-04276 HNSCC miRNA-Seq tumor CPT0245350009 170b159b-425f-4bd2-bfed-36d5b92686ca_mirnaseq_gdc_realn.bam 284325461 BAM harmonized CPTAC3 2206881f-1611-4e84-8dbc-37a183795a64 349feaa3958705be33e346d3fa83bf58 { 'aliquot_tag': 'ALQ_d7eb136c', 'gdc_sample_type': 'Primary Tumor' } C3N-04276.RNA-Seq.chimeric.T.hg38 C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 3ca0ddaf-b51b-4818-8c22-f435764737f1.rna_seq.chimeric.gdc_realn.bam 284551815 BAM chimeric harmonized CPTAC3 bcc6b27b-6dcf-4e80-bb94-a183600924e9 46e23bdc8114fd3bb6c9e8bff45b9bb1 { 'aliquot_tag': 'ALQ_d7eb136c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04276.RNA-Seq.genomic.T.hg38 C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 3ca0ddaf-b51b-4818-8c22-f435764737f1.rna_seq.genomic.gdc_realn.bam 9412975036 BAM genomic harmonized CPTAC3 567ca9b7-fe95-4123-88a0-828bdbdb0f10 1680fb177f6117e55fad1241c78860b7 { 'aliquot_tag': 'ALQ_d7eb136c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04276.RNA-Seq.R1_L002.T C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L002_R1_001.fastq.gz 4328601606 FASTQ R1_L002 unaligned CPTAC3 d1323de1-30ee-4d4e-8ea3-14da93af8015 c5730f9c848e662568f5b36d2fcae493 { 'aliquot_tag': 'ALQ_d7eb136c', 'gdc_sample_type': 'Primary Tumor' } -C3N-04276.RNA-Seq.R2_L002.T C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L002_R2_001.fastq.gz 5031131849 FASTQ R2_L002 unaligned CPTAC3 e323b48c-f22c-4f0c-8715-8647c21c71b1 f15bb0b0880cc1bbd973113c7659a0a8 { 'aliquot_tag': 'ALQ_d7eb136c', 'gdc_sample_type': 'Primary Tumor' } +C3N-04276.RNA-Seq.genomic.T.hg38 C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 3ca0ddaf-b51b-4818-8c22-f435764737f1.rna_seq.genomic.gdc_realn.bam 9412975036 BAM genomic harmonized CPTAC3 84c1b73e-c79c-49db-a665-f22b4cec8bc1 1680fb177f6117e55fad1241c78860b7 { 'aliquot_tag': 'ALQ_d7eb136c', 'gdc_sample_type': 'Primary Tumor' } +C3N-04276.RNA-Seq.R1_L002.T C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L002_R1_001.fastq.gz 4328601606 FASTQ R1_L002 unaligned CPTAC3 d1323de1-30ee-4d4e-8ea3-14da93af8015 c5730f9c848e662568f5b36d2fcae493 { 'aliquot_tag': 'ALQ_d7eb136c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-04276.RNA-Seq.R2_L002.T C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 190328_UNC31-K00269_0204_BH5F5NBBXY_GTCCGC_S7_L002_R2_001.fastq.gz 5031131849 FASTQ R2_L002 unaligned CPTAC3 e323b48c-f22c-4f0c-8715-8647c21c71b1 f15bb0b0880cc1bbd973113c7659a0a8 { 'aliquot_tag': 'ALQ_d7eb136c', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } C3N-04276.RNA-Seq.transcriptome.T.hg38 C3N-04276 HNSCC RNA-Seq tumor CPT0245350009 3ca0ddaf-b51b-4818-8c22-f435764737f1.rna_seq.transcriptome.gdc_realn.bam 9059906864 BAM transcriptome harmonized CPTAC3 736ea983-14f2-4e29-b05b-634d07d39163 268f058087404b043d30bdd6718cdd33 { 'aliquot_tag': 'ALQ_d7eb136c', 'gdc_sample_type': 'Primary Tumor' } C3N-04276.WGS.N C3N-04276 HNSCC WGS blood_normal CPT0245390002 CPT0245390002.WholeGenome.RP-1303.bam 63259704019 BAM aligned CPTAC3 77503410-57ab-4c0f-8111-3a7e02b36a54 4130b9565901b00b5790d3ed0b8f32dd { 'aliquot_tag': 'ALQ_85c927e5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04276.WGS.N.hg38 C3N-04276 HNSCC WGS blood_normal CPT0245390002 5b45e606-7f98-4778-9582-30f6b3c7de78_wgs_gdc_realn.bam 92038755481 BAM harmonized CPTAC3 f2302355-fdf5-430d-9751-2c6199089e99 00f92f3d8a3ea5a715dd6a9d1b8bf7eb { 'aliquot_tag': 'ALQ_85c927e5', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37582,16 +39969,19 @@ C3N-04277.miRNA-Seq.T C3N-04277 HNSCC miRNA-Seq tumor CPT0245400009 190228_UNC32 C3N-04277.miRNA-Seq.T.hg38 C3N-04277 HNSCC miRNA-Seq tumor CPT0245400009 51da119c-1747-4158-9242-e00a79cf80e9_mirnaseq_gdc_realn.bam 190140639 BAM harmonized CPTAC3 6d1c59ec-c889-4569-a98d-65ad3cdd8b9a 19c19257848fb113c6f206204508444f { 'aliquot_tag': 'ALQ_20eaca4', 'gdc_sample_type': 'Primary Tumor' } C3N-04277.RNA-Seq.chimeric.A.hg38 C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 1a041bfa-a18e-4bf0-afa6-e13308c3ed71.rna_seq.chimeric.gdc_realn.bam 28610641 BAM chimeric harmonized CPTAC3 8eb3c400-5e06-4bac-992d-e84b43f290dd 144a1dad813d38ea6771cf000c36edf4 { 'aliquot_tag': 'ALQ_afd19885', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04277.RNA-Seq.chimeric.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 e2833812-6956-4a73-beba-4bc833069a07.rna_seq.chimeric.gdc_realn.bam 35549232 BAM chimeric harmonized CPTAC3 d69ef686-55f3-4674-9ece-3b8e58db45e4 b2b1659b4cbd8f9b607c9826495ec338 { 'aliquot_tag': 'ALQ_20eaca4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04277.RNA-Seq.genomic.A.hg38 C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 1a041bfa-a18e-4bf0-afa6-e13308c3ed71.rna_seq.genomic.gdc_realn.bam 8309447314 BAM genomic harmonized CPTAC3 3e9d050e-e336-4c47-9207-1ee48bea5ca2 f73fba62fe0978cdfe07748ed436de9c { 'aliquot_tag': 'ALQ_afd19885', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04277.RNA-Seq.genomic.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 e2833812-6956-4a73-beba-4bc833069a07.rna_seq.genomic.gdc_realn.bam 9775788617 BAM genomic harmonized CPTAC3 10612f49-c6f1-4cab-96da-8d5a69f1979d 5540a5667610c307b440b03d777804dd { 'aliquot_tag': 'ALQ_20eaca4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04277.RNA-Seq.R1_L004.A C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 190416_UNC32-K00270_0165_AH5JY2BBXY_TCGTAGTG-AGACTTGG_S15_L004_R1_001.fastq.gz 3952174166 FASTQ R1_L004 unaligned CPTAC3 fc30b03c-1648-4a7f-8e34-d327a5538c66 4f6f397f6170aafdef564a0d859db2bb { 'aliquot_tag': 'ALQ_afd19885', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04277.RNA-Seq.R1_L008.T C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCAGAATT-ACCGGCCA_S34_L008_R1_001.fastq.gz 4177180141 FASTQ R1_L008 unaligned CPTAC3 fa35aaf1-1460-423c-b1d2-130e3f34dec7 7f359846189077740f1435fb0e4a1ba6 { 'aliquot_tag': 'ALQ_20eaca4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04277.RNA-Seq.R1_.T C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 20210723_P2_C12_WB7988-plate2_S36_R1_001.fastq.gz 7078273403 FASTQ R1_ unaligned CPTAC3 c27a6295-f422-4b05-9ff7-585de5f2503e b3c3dc6d9f91157878a0c9f35f1531ce { 'aliquot_tag': 'ALQ_74897a95', 'gdc_sample_type': 'Primary Tumor' } -C3N-04277.RNA-Seq.R2_L004.A C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 190416_UNC32-K00270_0165_AH5JY2BBXY_TCGTAGTG-AGACTTGG_S15_L004_R2_001.fastq.gz 4610350558 FASTQ R2_L004 unaligned CPTAC3 038c716a-d778-4625-9aa5-ac21960d828b 48f5c4e00f82120009c7e25c6454a5bc { 'aliquot_tag': 'ALQ_afd19885', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04277.RNA-Seq.R2_L008.T C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCAGAATT-ACCGGCCA_S34_L008_R2_001.fastq.gz 4758977709 FASTQ R2_L008 unaligned CPTAC3 84b1689d-1d99-4461-9aef-400ef5fde5d1 6fa0a6a5b2ca3ff6a4f77964f4736b54 { 'aliquot_tag': 'ALQ_20eaca4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04277.RNA-Seq.R2_.T C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 20210723_P2_C12_WB7988-plate2_S36_R2_001.fastq.gz 7340442869 FASTQ R2_ unaligned CPTAC3 a409cfc6-525a-469f-8ba3-d81b2dee59cf cd2e1eb12e3e8a6ce28ff17ce77a2318 { 'aliquot_tag': 'ALQ_74897a95', 'gdc_sample_type': 'Primary Tumor' } +C3N-04277.RNA-Seq.chimeric.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 73e334f3-fe29-478a-aaf3-12e7010ecfb0.rna_seq.chimeric.gdc_realn.bam 189491325 BAM chimeric harmonized CPTAC3 2d728144-9ea0-49f4-a5fd-dfc08cd51723 84035eebc20654d9773cbd9ab533bf78 { 'aliquot_tag': 'ALQ_74897a95', 'gdc_sample_type': 'Primary Tumor' } +C3N-04277.RNA-Seq.genomic.A.hg38 C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 1a041bfa-a18e-4bf0-afa6-e13308c3ed71.rna_seq.genomic.gdc_realn.bam 8309447314 BAM genomic harmonized CPTAC3 b9114f83-525e-402b-ba2f-eabe551e7e5e f73fba62fe0978cdfe07748ed436de9c { 'aliquot_tag': 'ALQ_afd19885', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04277.RNA-Seq.genomic.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 e2833812-6956-4a73-beba-4bc833069a07.rna_seq.genomic.gdc_realn.bam 9775788617 BAM genomic harmonized CPTAC3 6dcd26d9-d7cd-4b2a-9cc4-40f025791ab8 5540a5667610c307b440b03d777804dd { 'aliquot_tag': 'ALQ_20eaca4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04277.RNA-Seq.genomic.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 73e334f3-fe29-478a-aaf3-12e7010ecfb0.rna_seq.genomic.gdc_realn.bam 12064687960 BAM genomic harmonized CPTAC3 e236dff9-e4b9-4667-a473-9d373bf9063e a36971cabac47bae85c665328b4bce7f { 'aliquot_tag': 'ALQ_74897a95', 'gdc_sample_type': 'Primary Tumor' } +C3N-04277.RNA-Seq.R1_L004.A C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 190416_UNC32-K00270_0165_AH5JY2BBXY_TCGTAGTG-AGACTTGG_S15_L004_R1_001.fastq.gz 3952174166 FASTQ R1_L004 unaligned CPTAC3 fc30b03c-1648-4a7f-8e34-d327a5538c66 4f6f397f6170aafdef564a0d859db2bb { 'aliquot_tag': 'ALQ_afd19885', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-04277.RNA-Seq.R1_L008.T C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCAGAATT-ACCGGCCA_S34_L008_R1_001.fastq.gz 4177180141 FASTQ R1_L008 unaligned CPTAC3 fa35aaf1-1460-423c-b1d2-130e3f34dec7 7f359846189077740f1435fb0e4a1ba6 { 'aliquot_tag': 'ALQ_20eaca4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-04277.RNA-Seq.R2_L004.A C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 190416_UNC32-K00270_0165_AH5JY2BBXY_TCGTAGTG-AGACTTGG_S15_L004_R2_001.fastq.gz 4610350558 FASTQ R2_L004 unaligned CPTAC3 038c716a-d778-4625-9aa5-ac21960d828b 48f5c4e00f82120009c7e25c6454a5bc { 'aliquot_tag': 'ALQ_afd19885', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-04277.RNA-Seq.R2_L008.T C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 190411_UNC31-K00269_0208_BH3W3KBBXY_GCAGAATT-ACCGGCCA_S34_L008_R2_001.fastq.gz 4758977709 FASTQ R2_L008 unaligned CPTAC3 84b1689d-1d99-4461-9aef-400ef5fde5d1 6fa0a6a5b2ca3ff6a4f77964f4736b54 { 'aliquot_tag': 'ALQ_20eaca4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-04277.RNA-Seq.T C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 20210723_P2_C12_WB7988-plate2_S36_R1_001.fastq.gz 7078273403 FASTQ unaligned CPTAC3 c27a6295-f422-4b05-9ff7-585de5f2503e b3c3dc6d9f91157878a0c9f35f1531ce +C3N-04277.RNA-Seq.T C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 20210723_P2_C12_WB7988-plate2_S36_R2_001.fastq.gz 7340442869 FASTQ unaligned CPTAC3 a409cfc6-525a-469f-8ba3-d81b2dee59cf cd2e1eb12e3e8a6ce28ff17ce77a2318 C3N-04277.RNA-Seq.transcriptome.A.hg38 C3N-04277 HNSCC RNA-Seq tissue_normal CPT0245410006 1a041bfa-a18e-4bf0-afa6-e13308c3ed71.rna_seq.transcriptome.gdc_realn.bam 12123400658 BAM transcriptome harmonized CPTAC3 74112966-e6bb-47f5-8101-c77e6af950e2 674b51d39bb808544e06477c9a294a8c { 'aliquot_tag': 'ALQ_afd19885', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04277.RNA-Seq.transcriptome.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0245400009 e2833812-6956-4a73-beba-4bc833069a07.rna_seq.transcriptome.gdc_realn.bam 12146968352 BAM transcriptome harmonized CPTAC3 2a6dd467-441f-41de-b641-b5ed664a7d0e a970dfad805dced618acc1def65cd24d { 'aliquot_tag': 'ALQ_20eaca4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04277.RNA-Seq.transcriptome.T.hg38 C3N-04277 HNSCC RNA-Seq tumor CPT0315540011 73e334f3-fe29-478a-aaf3-12e7010ecfb0.rna_seq.transcriptome.gdc_realn.bam 6930648272 BAM transcriptome harmonized CPTAC3 a927cd11-b71f-4814-bbae-fa5326dac325 c822b41c22e991e44873a4bfbd77c834 { 'aliquot_tag': 'ALQ_74897a95', 'gdc_sample_type': 'Primary Tumor' } C3N-04277.WGS.N C3N-04277 HNSCC WGS blood_normal CPT0245440002 CPT0245440002.WholeGenome.RP-1303.bam 80571265488 BAM aligned CPTAC3 4d681d4d-1a43-4203-bdc0-bf7d3b3ac588 8850783af7086dec7c7b36c4715f97c2 { 'aliquot_tag': 'ALQ_605cd3ec', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04277.WGS.N.hg38 C3N-04277 HNSCC WGS blood_normal CPT0245440002 ded41cd7-4f29-4c29-b3b3-0a88e5b36ce3_wgs_gdc_realn.bam 116942366055 BAM harmonized CPTAC3 a005d77e-4d3b-4266-a034-d87b3f806230 70d58080eca8ce6236c93490f1377864 { 'aliquot_tag': 'ALQ_605cd3ec', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04277.WGS.T C3N-04277 HNSCC WGS tumor CPT0245400006 CPT0245400006.WholeGenome.RP-1303.bam 91014384486 BAM aligned CPTAC3 bb413b01-d4ac-4e64-bb50-9a666b094f42 0ecafd124374e4cdbe5a2fbcd2a531ab { 'aliquot_tag': 'ALQ_92b1b135', 'gdc_sample_type': 'Primary Tumor' } @@ -37610,16 +40000,19 @@ C3N-04278.miRNA-Seq.T C3N-04278 HNSCC miRNA-Seq tumor CPT0245450009 190228_UNC32 C3N-04278.miRNA-Seq.T.hg38 C3N-04278 HNSCC miRNA-Seq tumor CPT0245450009 7df1e38d-96c9-4fe4-a77e-f5e7b816f1ba_mirnaseq_gdc_realn.bam 180876809 BAM harmonized CPTAC3 8d0fabf3-2486-4352-90f3-e390764957e3 640b51c5f28e6356331af76cd01c26a8 { 'aliquot_tag': 'ALQ_caee23d4', 'gdc_sample_type': 'Primary Tumor' } C3N-04278.RNA-Seq.chimeric.A.hg38 C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 603d7732-1de1-46ac-ba9d-1fdfa145c856.rna_seq.chimeric.gdc_realn.bam 25841884 BAM chimeric harmonized CPTAC3 5eb4445c-3835-4a72-9a46-4a6118ff9c87 1e00a4745566006be81e60fc4939a598 { 'aliquot_tag': 'ALQ_1df14495', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04278.RNA-Seq.chimeric.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 c9b176e7-8866-467b-80e2-7a5c7f65f1ca.rna_seq.chimeric.gdc_realn.bam 37952639 BAM chimeric harmonized CPTAC3 ef36a33a-c83e-45c0-82f8-3b4481002442 ea64597bc295f56570952c95c6cdd08f { 'aliquot_tag': 'ALQ_caee23d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04278.RNA-Seq.genomic.A.hg38 C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 603d7732-1de1-46ac-ba9d-1fdfa145c856.rna_seq.genomic.gdc_realn.bam 7912702425 BAM genomic harmonized CPTAC3 76d183f0-bd25-4d92-9eac-25fff232dab0 11f5773fac0e63390af8e0a3c501eb74 { 'aliquot_tag': 'ALQ_1df14495', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04278.RNA-Seq.genomic.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 c9b176e7-8866-467b-80e2-7a5c7f65f1ca.rna_seq.genomic.gdc_realn.bam 8745461994 BAM genomic harmonized CPTAC3 04b50646-84a9-4c86-9d34-de93e258f5b4 b9536694c9fc8507d89bf0c4d35bf100 { 'aliquot_tag': 'ALQ_caee23d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04278.RNA-Seq.R1_L004.A C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 190416_UNC32-K00270_0165_AH5JY2BBXY_CTACGACA-GAGTCCAA_S14_L004_R1_001.fastq.gz 3786960941 FASTQ R1_L004 unaligned CPTAC3 f116ba9a-6ffc-4e62-b9e9-41d02186ec2f 12620cf421ce72c82d48f3ca1f7cf1ba { 'aliquot_tag': 'ALQ_1df14495', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04278.RNA-Seq.R1_L008.T C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGAGGCC-GTTAATTG_S36_L008_R1_001.fastq.gz 4006013754 FASTQ R1_L008 unaligned CPTAC3 e93328cd-f431-4fe7-aea0-a58c7f07d5b6 7c33f75da312028897d59d4b7abddd51 { 'aliquot_tag': 'ALQ_caee23d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04278.RNA-Seq.R1_.T C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 20210729_P3_A3_WB7988-Plate3_S3_R1_001.fastq.gz 3195072942 FASTQ R1_ unaligned CPTAC3 26c90ee3-5dd2-4143-b84b-3bc562492edf 49ffe57d4e6b9265d31c2b8511b62f27 { 'aliquot_tag': 'ALQ_e4929f5', 'gdc_sample_type': 'Primary Tumor' } -C3N-04278.RNA-Seq.R2_L004.A C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 190416_UNC32-K00270_0165_AH5JY2BBXY_CTACGACA-GAGTCCAA_S14_L004_R2_001.fastq.gz 4346845116 FASTQ R2_L004 unaligned CPTAC3 f377d00d-66c1-474f-84ec-80b073a8d44f 9e1a67d180921b0c98788889ab6a9548 { 'aliquot_tag': 'ALQ_1df14495', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04278.RNA-Seq.R2_L008.T C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGAGGCC-GTTAATTG_S36_L008_R2_001.fastq.gz 4609375882 FASTQ R2_L008 unaligned CPTAC3 48978f66-2b5d-44d0-b70f-1ef3ed77511c d1d2a8fc1ba9d5056e674e28a3bcfb4b { 'aliquot_tag': 'ALQ_caee23d4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04278.RNA-Seq.R2_.T C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 20210729_P3_A3_WB7988-Plate3_S3_R2_001.fastq.gz 3308412929 FASTQ R2_ unaligned CPTAC3 ae3e9d1f-d4a3-4ca9-b91d-d4d5514bc475 4999d515e7992870b0746e2e3639c4b3 { 'aliquot_tag': 'ALQ_e4929f5', 'gdc_sample_type': 'Primary Tumor' } +C3N-04278.RNA-Seq.chimeric.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 99b7c3b4-ad94-4736-850e-2533d0f3d31f.rna_seq.chimeric.gdc_realn.bam 61225362 BAM chimeric harmonized CPTAC3 e76d177f-b3c8-4c69-baaf-71834b568286 d7809ff81d071811593f46c361065565 { 'aliquot_tag': 'ALQ_e4929f5', 'gdc_sample_type': 'Primary Tumor' } +C3N-04278.RNA-Seq.genomic.A.hg38 C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 603d7732-1de1-46ac-ba9d-1fdfa145c856.rna_seq.genomic.gdc_realn.bam 7912702425 BAM genomic harmonized CPTAC3 f10e016a-5e35-4ea4-9728-5aa419225ada 11f5773fac0e63390af8e0a3c501eb74 { 'aliquot_tag': 'ALQ_1df14495', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04278.RNA-Seq.genomic.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 c9b176e7-8866-467b-80e2-7a5c7f65f1ca.rna_seq.genomic.gdc_realn.bam 8745461994 BAM genomic harmonized CPTAC3 833bca11-0ae4-4e59-b16b-d720aeb98fa9 b9536694c9fc8507d89bf0c4d35bf100 { 'aliquot_tag': 'ALQ_caee23d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04278.RNA-Seq.genomic.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 99b7c3b4-ad94-4736-850e-2533d0f3d31f.rna_seq.genomic.gdc_realn.bam 4998805159 BAM genomic harmonized CPTAC3 d867d212-e2ea-4894-8ca5-30a65238d8c5 2819c001e14870548a48ad4cb1443a5d { 'aliquot_tag': 'ALQ_e4929f5', 'gdc_sample_type': 'Primary Tumor' } +C3N-04278.RNA-Seq.R1_L004.A C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 190416_UNC32-K00270_0165_AH5JY2BBXY_CTACGACA-GAGTCCAA_S14_L004_R1_001.fastq.gz 3786960941 FASTQ R1_L004 unaligned CPTAC3 f116ba9a-6ffc-4e62-b9e9-41d02186ec2f 12620cf421ce72c82d48f3ca1f7cf1ba { 'aliquot_tag': 'ALQ_1df14495', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-04278.RNA-Seq.R1_L008.T C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGAGGCC-GTTAATTG_S36_L008_R1_001.fastq.gz 4006013754 FASTQ R1_L008 unaligned CPTAC3 e93328cd-f431-4fe7-aea0-a58c7f07d5b6 7c33f75da312028897d59d4b7abddd51 { 'aliquot_tag': 'ALQ_caee23d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-04278.RNA-Seq.R2_L004.A C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 190416_UNC32-K00270_0165_AH5JY2BBXY_CTACGACA-GAGTCCAA_S14_L004_R2_001.fastq.gz 4346845116 FASTQ R2_L004 unaligned CPTAC3 f377d00d-66c1-474f-84ec-80b073a8d44f 9e1a67d180921b0c98788889ab6a9548 { 'aliquot_tag': 'ALQ_1df14495', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-04278.RNA-Seq.R2_L008.T C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 190411_UNC31-K00269_0208_BH3W3KBBXY_ATGAGGCC-GTTAATTG_S36_L008_R2_001.fastq.gz 4609375882 FASTQ R2_L008 unaligned CPTAC3 48978f66-2b5d-44d0-b70f-1ef3ed77511c d1d2a8fc1ba9d5056e674e28a3bcfb4b { 'aliquot_tag': 'ALQ_caee23d4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-04278.RNA-Seq.T C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 20210729_P3_A3_WB7988-Plate3_S3_R1_001.fastq.gz 3195072942 FASTQ unaligned CPTAC3 26c90ee3-5dd2-4143-b84b-3bc562492edf 49ffe57d4e6b9265d31c2b8511b62f27 +C3N-04278.RNA-Seq.T C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 20210729_P3_A3_WB7988-Plate3_S3_R2_001.fastq.gz 3308412929 FASTQ unaligned CPTAC3 ae3e9d1f-d4a3-4ca9-b91d-d4d5514bc475 4999d515e7992870b0746e2e3639c4b3 C3N-04278.RNA-Seq.transcriptome.A.hg38 C3N-04278 HNSCC RNA-Seq tissue_normal CPT0245460006 603d7732-1de1-46ac-ba9d-1fdfa145c856.rna_seq.transcriptome.gdc_realn.bam 11773338645 BAM transcriptome harmonized CPTAC3 f756de53-1cd3-4a0c-b5f6-b2289d575d30 0bd4c4c4e1f5a2724cae373440d68224 { 'aliquot_tag': 'ALQ_1df14495', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04278.RNA-Seq.transcriptome.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0245450009 c9b176e7-8866-467b-80e2-7a5c7f65f1ca.rna_seq.transcriptome.gdc_realn.bam 10819062167 BAM transcriptome harmonized CPTAC3 73df4564-dbd0-4554-a4be-a1524bc0e9ac c928768b1b55e6c337d137db32aa862a { 'aliquot_tag': 'ALQ_caee23d4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04278.RNA-Seq.transcriptome.T.hg38 C3N-04278 HNSCC RNA-Seq tumor CPT0315560011 99b7c3b4-ad94-4736-850e-2533d0f3d31f.rna_seq.transcriptome.gdc_realn.bam 2797667556 BAM transcriptome harmonized CPTAC3 fbed7a04-7716-4404-9174-727017076efd 4de8e0f12f62c25d87c51e47acfc6e06 { 'aliquot_tag': 'ALQ_e4929f5', 'gdc_sample_type': 'Primary Tumor' } C3N-04278.WGS.N C3N-04278 HNSCC WGS blood_normal CPT0245490002 CPT0245490002.WholeGenome.RP-1303.bam 88789519937 BAM aligned CPTAC3 c12b8c7e-aabb-4271-a583-568ddb53167b 93ae1fa4ac02cf2aef1256a6dc1b5b25 { 'aliquot_tag': 'ALQ_98cc175d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04278.WGS.N.hg38 C3N-04278 HNSCC WGS blood_normal CPT0245490002 1698bc58-9a69-423e-b393-b4cdf0838070_wgs_gdc_realn.bam 128708036498 BAM harmonized CPTAC3 c5ba06ee-14fc-4800-b977-bdbafe91c878 f5baf990efbb18c72235cfc8cf9f7599 { 'aliquot_tag': 'ALQ_98cc175d', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04278.WGS.T C3N-04278 HNSCC WGS tumor CPT0245450006 CPT0245450006.WholeGenome.RP-1303.bam 80738739921 BAM aligned CPTAC3 f4a86786-c506-4ccc-a40e-f79f3b724f3e e476cdd591a141e04c494cc22ac2b9da { 'aliquot_tag': 'ALQ_5a513e45', 'gdc_sample_type': 'Primary Tumor' } @@ -37635,9 +40028,9 @@ C3N-04279.MethArray.Red.T C3N-04279 HNSCC Methylation Array tumor CPT0245500006 C3N-04279.miRNA-Seq.T C3N-04279 HNSCC miRNA-Seq tumor CPT0245500009 190228_UNC32-K00270_0151_AHYLY3BBXX_ACTGAT_S25_L006_R1_001.unaln.bam 244751801 BAM unaligned CPTAC3 6ac6f941-9d08-4dd9-ba5d-20335bcfb165 0181acdbc766873e67a251602f75612b { 'aliquot_tag': 'ALQ_c9527f01', 'gdc_sample_type': 'Primary Tumor' } C3N-04279.miRNA-Seq.T.hg38 C3N-04279 HNSCC miRNA-Seq tumor CPT0245500009 1b064c7f-d3db-40d4-b4e2-6ff0249c93c7_mirnaseq_gdc_realn.bam 272663647 BAM harmonized CPTAC3 ad8656e3-e04c-4d0f-be34-54b536ecfad0 a1e3ce203afdc183640ab6a34022a01a { 'aliquot_tag': 'ALQ_c9527f01', 'gdc_sample_type': 'Primary Tumor' } C3N-04279.RNA-Seq.chimeric.T.hg38 C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 622b128a-ad56-4121-b304-b3433e6a2871.rna_seq.chimeric.gdc_realn.bam 49783521 BAM chimeric harmonized CPTAC3 6924b4f4-f122-42c0-8a73-546c146426c4 32b1e729ac866d7b683aee6ad50b99ac { 'aliquot_tag': 'ALQ_c9527f01', 'gdc_sample_type': 'Primary Tumor' } -C3N-04279.RNA-Seq.genomic.T.hg38 C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 622b128a-ad56-4121-b304-b3433e6a2871.rna_seq.genomic.gdc_realn.bam 10500000357 BAM genomic harmonized CPTAC3 bf6e6734-21ca-4b1e-93ec-14fa6206dbf4 3af4a8096ec72a360dd792440719b05c { 'aliquot_tag': 'ALQ_c9527f01', 'gdc_sample_type': 'Primary Tumor' } -C3N-04279.RNA-Seq.R1_L001.T C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACTAAGAT-AACCGCGG_S3_L001_R1_001.fastq.gz 5067816097 FASTQ R1_L001 unaligned CPTAC3 e18cc86d-418f-4b3e-b147-a5d3ff1a666d ec2444a22912a24171ca72a460415d5a { 'aliquot_tag': 'ALQ_c9527f01', 'gdc_sample_type': 'Primary Tumor' } -C3N-04279.RNA-Seq.R2_L001.T C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACTAAGAT-AACCGCGG_S3_L001_R2_001.fastq.gz 5664734231 FASTQ R2_L001 unaligned CPTAC3 5913e13e-6f12-424d-aa77-b133749389ef c1dba02702783155b889147e3492ef7a { 'aliquot_tag': 'ALQ_c9527f01', 'gdc_sample_type': 'Primary Tumor' } +C3N-04279.RNA-Seq.genomic.T.hg38 C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 622b128a-ad56-4121-b304-b3433e6a2871.rna_seq.genomic.gdc_realn.bam 10500000357 BAM genomic harmonized CPTAC3 414ed355-5100-47c6-b986-b92e9423856d 3af4a8096ec72a360dd792440719b05c { 'aliquot_tag': 'ALQ_c9527f01', 'gdc_sample_type': 'Primary Tumor' } +C3N-04279.RNA-Seq.R1_L001.T C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACTAAGAT-AACCGCGG_S3_L001_R1_001.fastq.gz 5067816097 FASTQ R1_L001 unaligned CPTAC3 e18cc86d-418f-4b3e-b147-a5d3ff1a666d ec2444a22912a24171ca72a460415d5a { 'aliquot_tag': 'ALQ_c9527f01', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-04279.RNA-Seq.R2_L001.T C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 190416_UNC32-K00270_0165_AH5JY2BBXY_ACTAAGAT-AACCGCGG_S3_L001_R2_001.fastq.gz 5664734231 FASTQ R2_L001 unaligned CPTAC3 5913e13e-6f12-424d-aa77-b133749389ef c1dba02702783155b889147e3492ef7a { 'aliquot_tag': 'ALQ_c9527f01', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } C3N-04279.RNA-Seq.transcriptome.T.hg38 C3N-04279 HNSCC RNA-Seq tumor CPT0245500009 622b128a-ad56-4121-b304-b3433e6a2871.rna_seq.transcriptome.gdc_realn.bam 14648698623 BAM transcriptome harmonized CPTAC3 00bd3adf-ef1a-44f3-93ae-4853ac38c440 93def6d74b8aea1e856b3e40fc864a05 { 'aliquot_tag': 'ALQ_c9527f01', 'gdc_sample_type': 'Primary Tumor' } C3N-04279.WGS.N C3N-04279 HNSCC WGS blood_normal CPT0245540002 CPT0245540002.WholeGenome.RP-1303.bam 63904079590 BAM aligned CPTAC3 58a16719-c89d-4928-99e1-79c2ef3b91cb d7998d1cadf84be353a9887df770dc89 { 'aliquot_tag': 'ALQ_ab000049', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04279.WGS.N.hg38 C3N-04279 HNSCC WGS blood_normal CPT0245540002 480b4742-a7e3-48ca-bf31-53b40d1456f0_wgs_gdc_realn.bam 92540253839 BAM harmonized CPTAC3 9fe2769e-a458-4a2e-b017-4c80ca2f097e 88b2e02e24427a8366804c31389b61cf { 'aliquot_tag': 'ALQ_ab000049', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37652,12 +40045,15 @@ C3N-04280.MethArray.Red.T C3N-04280 HNSCC Methylation Array tumor CPT0245600006 C3N-04280.miRNA-Seq.T C3N-04280 HNSCC miRNA-Seq tumor CPT0245600009 190228_UNC32-K00270_0151_AHYLY3BBXX_ATTCCT_S27_L006_R1_001.unaln.bam 194265845 BAM unaligned CPTAC3 ec878cc4-39e0-40cb-9532-1c1ad537c67e 199b802976f07fc3798e7e2029f0b4dc { 'aliquot_tag': 'ALQ_4fc60daf', 'gdc_sample_type': 'Primary Tumor' } C3N-04280.miRNA-Seq.T.hg38 C3N-04280 HNSCC miRNA-Seq tumor CPT0245600009 66cfccf2-5cf0-4b5d-9a06-aeba36c1361a_mirnaseq_gdc_realn.bam 222701478 BAM harmonized CPTAC3 495ed7e8-a134-470e-8e6e-1f3cf409be37 1609048b09d847765fcb83b1f33532ec { 'aliquot_tag': 'ALQ_4fc60daf', 'gdc_sample_type': 'Primary Tumor' } C3N-04280.RNA-Seq.chimeric.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 a1f0fad9-c1ea-40d4-86c7-b11dd79a6e40.rna_seq.chimeric.gdc_realn.bam 36842183 BAM chimeric harmonized CPTAC3 eac4efcb-3e53-411c-8275-ce823cf8a5c2 ac5f76c2f0d082b9b18f7294a063ee27 { 'aliquot_tag': 'ALQ_4fc60daf', 'gdc_sample_type': 'Primary Tumor' } +C3N-04280.RNA-Seq.chimeric.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 75f58791-a6d1-4a91-9d62-9b0aa982c24e.rna_seq.chimeric.gdc_realn.bam 259489468 BAM chimeric harmonized CPTAC3 75e08857-4280-4e6b-8f2a-13ce2eca5cdc 26c24dd03302de3b39345e94194ee9b2 { 'aliquot_tag': 'ALQ_79daefb', 'gdc_sample_type': 'Primary Tumor' } C3N-04280.RNA-Seq.genomic.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 a1f0fad9-c1ea-40d4-86c7-b11dd79a6e40.rna_seq.genomic.gdc_realn.bam 8180793267 BAM genomic harmonized CPTAC3 bc0998dc-9a0f-4af9-a7ba-e50ffb8c055f d6741b83a703032099b92765a49e7c56 { 'aliquot_tag': 'ALQ_4fc60daf', 'gdc_sample_type': 'Primary Tumor' } -C3N-04280.RNA-Seq.R1_L001.T C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 190416_UNC32-K00270_0165_AH5JY2BBXY_CTTGGTAT-CCAAGTCC_S1_L001_R1_001.fastq.gz 3717916985 FASTQ R1_L001 unaligned CPTAC3 891ebcec-52f4-4ca9-ba9c-66030838f59f 3487acfe3780026ee44e6c4a3702591e { 'aliquot_tag': 'ALQ_4fc60daf', 'gdc_sample_type': 'Primary Tumor' } -C3N-04280.RNA-Seq.R1_.T C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 20210729_P3_C6_WB7988-Plate3_S30_R1_001.fastq.gz 9905839657 FASTQ R1_ unaligned CPTAC3 745c0577-a2df-4088-bfb7-e9cafae61616 12b95bc629c082dccca64816156db09b { 'aliquot_tag': 'ALQ_79daefb', 'gdc_sample_type': 'Primary Tumor' } -C3N-04280.RNA-Seq.R2_L001.T C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 190416_UNC32-K00270_0165_AH5JY2BBXY_CTTGGTAT-CCAAGTCC_S1_L001_R2_001.fastq.gz 4278515231 FASTQ R2_L001 unaligned CPTAC3 bb6805d0-d597-4650-b2fa-2b49d5f94e07 e8e696182987b45ab10e070369c006ac { 'aliquot_tag': 'ALQ_4fc60daf', 'gdc_sample_type': 'Primary Tumor' } -C3N-04280.RNA-Seq.R2_.T C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 20210729_P3_C6_WB7988-Plate3_S30_R2_001.fastq.gz 10266132413 FASTQ R2_ unaligned CPTAC3 f8be5a53-0cec-43c9-89ff-6313ea3f1424 7f0a2c2fe5298d75a8713d8a04deae3a { 'aliquot_tag': 'ALQ_79daefb', 'gdc_sample_type': 'Primary Tumor' } +C3N-04280.RNA-Seq.genomic.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 75f58791-a6d1-4a91-9d62-9b0aa982c24e.rna_seq.genomic.gdc_realn.bam 13752443573 BAM genomic harmonized CPTAC3 d5925d26-32ef-4501-acf6-a3fea534a2ef d781113754a0f604367e800cc6a9a587 { 'aliquot_tag': 'ALQ_79daefb', 'gdc_sample_type': 'Primary Tumor' } +C3N-04280.RNA-Seq.R1_L001.T C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 190416_UNC32-K00270_0165_AH5JY2BBXY_CTTGGTAT-CCAAGTCC_S1_L001_R1_001.fastq.gz 3717916985 FASTQ R1_L001 unaligned CPTAC3 891ebcec-52f4-4ca9-ba9c-66030838f59f 3487acfe3780026ee44e6c4a3702591e { 'aliquot_tag': 'ALQ_4fc60daf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-04280.RNA-Seq.R2_L001.T C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 190416_UNC32-K00270_0165_AH5JY2BBXY_CTTGGTAT-CCAAGTCC_S1_L001_R2_001.fastq.gz 4278515231 FASTQ R2_L001 unaligned CPTAC3 bb6805d0-d597-4650-b2fa-2b49d5f94e07 e8e696182987b45ab10e070369c006ac { 'aliquot_tag': 'ALQ_4fc60daf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-04280.RNA-Seq.T C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 20210729_P3_C6_WB7988-Plate3_S30_R1_001.fastq.gz 9905839657 FASTQ unaligned CPTAC3 745c0577-a2df-4088-bfb7-e9cafae61616 12b95bc629c082dccca64816156db09b +C3N-04280.RNA-Seq.T C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 20210729_P3_C6_WB7988-Plate3_S30_R2_001.fastq.gz 10266132413 FASTQ unaligned CPTAC3 f8be5a53-0cec-43c9-89ff-6313ea3f1424 7f0a2c2fe5298d75a8713d8a04deae3a C3N-04280.RNA-Seq.transcriptome.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0245600009 a1f0fad9-c1ea-40d4-86c7-b11dd79a6e40.rna_seq.transcriptome.gdc_realn.bam 11934457478 BAM transcriptome harmonized CPTAC3 0760ec2c-7efd-4e95-b3af-4bfc33a084ce 0818877828ac8d3954a5455ab84e2602 { 'aliquot_tag': 'ALQ_4fc60daf', 'gdc_sample_type': 'Primary Tumor' } +C3N-04280.RNA-Seq.transcriptome.T.hg38 C3N-04280 HNSCC RNA-Seq tumor CPT0315600011 75f58791-a6d1-4a91-9d62-9b0aa982c24e.rna_seq.transcriptome.gdc_realn.bam 8986638798 BAM transcriptome harmonized CPTAC3 ab052b98-4d65-4380-b009-24b024333692 6bef34b7046a6c7f923b854ad1a97628 { 'aliquot_tag': 'ALQ_79daefb', 'gdc_sample_type': 'Primary Tumor' } C3N-04280.WGS.N C3N-04280 HNSCC WGS blood_normal CPT0245620002 CPT0245620002.WholeGenome.RP-1303.bam 67963317267 BAM aligned CPTAC3 186f0782-06f3-4a56-a135-8b83a0bbb2d2 4d639e0562a08efde7168e3e5e58d654 { 'aliquot_tag': 'ALQ_a2d48747', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04280.WGS.N.hg38 C3N-04280 HNSCC WGS blood_normal CPT0245620002 ddd24fc1-29d9-4388-9e4f-df69a9ba3818_wgs_gdc_realn.bam 98820582386 BAM harmonized CPTAC3 a0c3c495-4c00-4b9d-8a1e-5c18e1e26354 c950605e60f9e0d37dc4d1d3ccfaa114 { 'aliquot_tag': 'ALQ_a2d48747', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04280.WGS.T C3N-04280 HNSCC WGS tumor CPT0245600006 CPT0245600006.WholeGenome.RP-1303.bam 79439042933 BAM aligned CPTAC3 9c1a26c2-ab4a-4709-b28d-1a30349228fb 859c2e3016cf9d03db052ecac375a303 { 'aliquot_tag': 'ALQ_df79103e', 'gdc_sample_type': 'Primary Tumor' } @@ -37671,9 +40067,9 @@ C3N-04282.MethArray.Red.T C3N-04282 PDA Methylation Array tumor CPT0246990006 20 C3N-04282.miRNA-Seq.T C3N-04282 PDA miRNA-Seq tumor CPT0246990009 190712_UNC32-K00270_0192_BH7HL3BBXY_CAGATC_S30_L005_R1_001.unaln.bam 257103157 BAM unaligned CPTAC3 ec35cf8d-05b6-4010-8dc9-457c3a634436 96acbaad5c056dea97f679c47d9d0b14 { 'aliquot_tag': 'ALQ_8268c796', 'gdc_sample_type': 'Primary Tumor' } C3N-04282.miRNA-Seq.T.hg38 C3N-04282 PDA miRNA-Seq tumor CPT0246990009 8c18775f-8108-49de-a460-79a1c78effb0_mirnaseq_gdc_realn.bam 294680142 BAM harmonized CPTAC3 8f1e49e1-087a-4b8a-b007-7f13a667c47e 4e694905f9b89679db95287d50cd3ca6 { 'aliquot_tag': 'ALQ_8268c796', 'gdc_sample_type': 'Primary Tumor' } C3N-04282.RNA-Seq.chimeric.T.hg38 C3N-04282 PDA RNA-Seq tumor CPT0246990009 a2888422-d15e-46be-aa7a-19d02c9601c5.rna_seq.chimeric.gdc_realn.bam 36220855 BAM chimeric harmonized CPTAC3 13f149fc-c9e5-4242-a4a0-c13cc22a22b0 b6aa4acc9978a2bd863e20d3b70d2dd6 { 'aliquot_tag': 'ALQ_8268c796', 'gdc_sample_type': 'Primary Tumor' } -C3N-04282.RNA-Seq.genomic.T.hg38 C3N-04282 PDA RNA-Seq tumor CPT0246990009 a2888422-d15e-46be-aa7a-19d02c9601c5.rna_seq.genomic.gdc_realn.bam 8354009656 BAM genomic harmonized CPTAC3 e1866c82-70ce-47c7-86f1-b871ad39f3e2 e62eebaa286d8151df338e24de6f07ba { 'aliquot_tag': 'ALQ_8268c796', 'gdc_sample_type': 'Primary Tumor' } -C3N-04282.RNA-Seq.R1_L008.T C3N-04282 PDA RNA-Seq tumor CPT0246990009 190621_UNC32-K00270_0185_BH7G72BBXY_AGGCAGAG-AGAATGCC_S32_L008_R1_001.fastq.gz 4063994812 FASTQ R1_L008 unaligned CPTAC3 48f5ca48-36ca-489c-a76e-2623665b37c3 2204a5fcd3bbc865f7a206c9438e8d93 { 'aliquot_tag': 'ALQ_8268c796', 'gdc_sample_type': 'Primary Tumor' } -C3N-04282.RNA-Seq.R2_L008.T C3N-04282 PDA RNA-Seq tumor CPT0246990009 190621_UNC32-K00270_0185_BH7G72BBXY_AGGCAGAG-AGAATGCC_S32_L008_R2_001.fastq.gz 4277690135 FASTQ R2_L008 unaligned CPTAC3 8fdb2cd9-06ab-4ce2-8a7f-505bf4301343 6597b8cfab9743a46d62afa8159a2b05 { 'aliquot_tag': 'ALQ_8268c796', 'gdc_sample_type': 'Primary Tumor' } +C3N-04282.RNA-Seq.genomic.T.hg38 C3N-04282 PDA RNA-Seq tumor CPT0246990009 a2888422-d15e-46be-aa7a-19d02c9601c5.rna_seq.genomic.gdc_realn.bam 8354009656 BAM genomic harmonized CPTAC3 660ffc8b-0133-42e3-90bd-1e29aec1b2b3 e62eebaa286d8151df338e24de6f07ba { 'aliquot_tag': 'ALQ_8268c796', 'gdc_sample_type': 'Primary Tumor' } +C3N-04282.RNA-Seq.R1_L008.T C3N-04282 PDA RNA-Seq tumor CPT0246990009 190621_UNC32-K00270_0185_BH7G72BBXY_AGGCAGAG-AGAATGCC_S32_L008_R1_001.fastq.gz 4063994812 FASTQ R1_L008 unaligned CPTAC3 48f5ca48-36ca-489c-a76e-2623665b37c3 2204a5fcd3bbc865f7a206c9438e8d93 { 'aliquot_tag': 'ALQ_8268c796', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-04282.RNA-Seq.R2_L008.T C3N-04282 PDA RNA-Seq tumor CPT0246990009 190621_UNC32-K00270_0185_BH7G72BBXY_AGGCAGAG-AGAATGCC_S32_L008_R2_001.fastq.gz 4277690135 FASTQ R2_L008 unaligned CPTAC3 8fdb2cd9-06ab-4ce2-8a7f-505bf4301343 6597b8cfab9743a46d62afa8159a2b05 { 'aliquot_tag': 'ALQ_8268c796', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } C3N-04282.RNA-Seq.transcriptome.T.hg38 C3N-04282 PDA RNA-Seq tumor CPT0246990009 a2888422-d15e-46be-aa7a-19d02c9601c5.rna_seq.transcriptome.gdc_realn.bam 12017077144 BAM transcriptome harmonized CPTAC3 99743a01-3836-4db2-b811-a8cc6d2b7672 b0937b767eed61cbe88599376dee1f8f { 'aliquot_tag': 'ALQ_8268c796', 'gdc_sample_type': 'Primary Tumor' } C3N-04282.WGS.N C3N-04282 PDA WGS blood_normal CPT0247030002 CPT0247030002.WholeGenome.RP-1303.bam 73489342106 BAM aligned CPTAC3 f46215cf-6a46-4762-9d48-07d2a88de5ce 28c6d25eabf77dd830d337f6a5386c3b { 'aliquot_tag': 'ALQ_de725cc3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04282.WGS.N.hg38 C3N-04282 PDA WGS blood_normal CPT0247030002 855b4f54-6be8-4afb-bbd3-ee97f4f24be0_wgs_gdc_realn.bam 106703114601 BAM harmonized CPTAC3 fa9b3384-b318-4c8e-99d9-f3eff1da3b0b d4ca040fff8455eb3e8592fec6353ab2 { 'aliquot_tag': 'ALQ_de725cc3', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37693,12 +40089,12 @@ C3N-04283.miRNA-Seq.T C3N-04283 PDA miRNA-Seq tumor CPT0247040006 190712_UNC32-K C3N-04283.miRNA-Seq.T.hg38 C3N-04283 PDA miRNA-Seq tumor CPT0247040006 ed60922c-bb9c-46f8-b289-c7dea5afe5fd_mirnaseq_gdc_realn.bam 243853128 BAM harmonized CPTAC3 81eaf3a9-719b-4e99-83c9-b7addfe9e5c6 c061b7f336f8a532bbe55f4093218e2e { 'aliquot_tag': 'ALQ_6b3f44ca', 'gdc_sample_type': 'Primary Tumor' } C3N-04283.RNA-Seq.chimeric.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 489e748d-89a5-4e86-8324-f4e190d9465d.rna_seq.chimeric.gdc_realn.bam 35945383 BAM chimeric harmonized CPTAC3 e9a63f53-7337-4e4f-9687-ebd9dcb6faa0 279e40045cd635ec95c77b64cc81f8b0 { 'aliquot_tag': 'ALQ_b1e7407d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04283.RNA-Seq.chimeric.T.hg38 C3N-04283 PDA RNA-Seq tumor CPT0247040006 2cf79d6d-274a-4e2f-a163-df77b63f188c.rna_seq.chimeric.gdc_realn.bam 30557595 BAM chimeric harmonized CPTAC3 075cb67b-06aa-4526-a7b3-2caff7f8dc6c bcbb1829143952cee6892095968899d2 { 'aliquot_tag': 'ALQ_6b3f44ca', 'gdc_sample_type': 'Primary Tumor' } -C3N-04283.RNA-Seq.genomic.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 489e748d-89a5-4e86-8324-f4e190d9465d.rna_seq.genomic.gdc_realn.bam 8989527794 BAM genomic harmonized CPTAC3 1d4786b5-415e-4620-826d-a147d0d0344d 84c3021d65964eb10f087d59301ef18e { 'aliquot_tag': 'ALQ_b1e7407d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04283.RNA-Seq.genomic.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 489e748d-89a5-4e86-8324-f4e190d9465d.rna_seq.genomic.gdc_realn.bam 8989527794 BAM genomic harmonized CPTAC3 ae59050d-76e0-4c42-a4ef-8a8871ac76df 84c3021d65964eb10f087d59301ef18e { 'aliquot_tag': 'ALQ_b1e7407d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04283.RNA-Seq.genomic.T.hg38 C3N-04283 PDA RNA-Seq tumor CPT0247040006 2cf79d6d-274a-4e2f-a163-df77b63f188c.rna_seq.genomic.gdc_realn.bam 8780238700 BAM genomic harmonized CPTAC3 c2fe4d94-3c59-4dd5-b640-56eddc127024 11c4675136fb4812b10851f0c39164a8 { 'aliquot_tag': 'ALQ_6b3f44ca', 'gdc_sample_type': 'Primary Tumor' } -C3N-04283.RNA-Seq.R1_L002.T C3N-04283 PDA RNA-Seq tumor CPT0247040006 190702_UNC32-K00270_0188_BH7CLJBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 3966628698 FASTQ R1_L002 unaligned CPTAC3 3c3a6510-d2eb-4e12-88f5-5ed58b63d965 c9cc02d326cd90324d5e4d29f655ce7a { 'aliquot_tag': 'ALQ_6b3f44ca', 'gdc_sample_type': 'Primary Tumor' } -C3N-04283.RNA-Seq.R1_L005.A C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 190702_UNC32-K00270_0187_AH7FK2BBXY_ATCCACTG-AGGTGCGT_S14_L005_R1_001.fastq.gz 4132845700 FASTQ R1_L005 unaligned CPTAC3 8ed41278-1ed2-43c8-862c-5a7f96cec395 3c0152f24a6a3a113d250c379b6549a8 { 'aliquot_tag': 'ALQ_b1e7407d', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04283.RNA-Seq.R2_L002.T C3N-04283 PDA RNA-Seq tumor CPT0247040006 190702_UNC32-K00270_0188_BH7CLJBBXY_TATCGCAC-CTTAGTGT_S6_L002_R2_001.fastq.gz 4636411008 FASTQ R2_L002 unaligned CPTAC3 fabcefa5-c60a-4ebc-8840-b9709950055a c1b8220494a00ba90e84c1e2c2a6335b { 'aliquot_tag': 'ALQ_6b3f44ca', 'gdc_sample_type': 'Primary Tumor' } -C3N-04283.RNA-Seq.R2_L005.A C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 190702_UNC32-K00270_0187_AH7FK2BBXY_ATCCACTG-AGGTGCGT_S14_L005_R2_001.fastq.gz 4510226646 FASTQ R2_L005 unaligned CPTAC3 e029eda1-f5a9-4e79-8ba3-65c0d6c76042 c28fd26f03e834d7ba24db21f25fe561 { 'aliquot_tag': 'ALQ_b1e7407d', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04283.RNA-Seq.R1_L002.T C3N-04283 PDA RNA-Seq tumor CPT0247040006 190702_UNC32-K00270_0188_BH7CLJBBXY_TATCGCAC-CTTAGTGT_S6_L002_R1_001.fastq.gz 3966628698 FASTQ R1_L002 unaligned CPTAC3 3c3a6510-d2eb-4e12-88f5-5ed58b63d965 c9cc02d326cd90324d5e4d29f655ce7a { 'aliquot_tag': 'ALQ_6b3f44ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-04283.RNA-Seq.R1_L005.A C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 190702_UNC32-K00270_0187_AH7FK2BBXY_ATCCACTG-AGGTGCGT_S14_L005_R1_001.fastq.gz 4132845700 FASTQ R1_L005 unaligned CPTAC3 8ed41278-1ed2-43c8-862c-5a7f96cec395 3c0152f24a6a3a113d250c379b6549a8 { 'aliquot_tag': 'ALQ_b1e7407d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-04283.RNA-Seq.R2_L002.T C3N-04283 PDA RNA-Seq tumor CPT0247040006 190702_UNC32-K00270_0188_BH7CLJBBXY_TATCGCAC-CTTAGTGT_S6_L002_R2_001.fastq.gz 4636411008 FASTQ R2_L002 unaligned CPTAC3 fabcefa5-c60a-4ebc-8840-b9709950055a c1b8220494a00ba90e84c1e2c2a6335b { 'aliquot_tag': 'ALQ_6b3f44ca', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-04283.RNA-Seq.R2_L005.A C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 190702_UNC32-K00270_0187_AH7FK2BBXY_ATCCACTG-AGGTGCGT_S14_L005_R2_001.fastq.gz 4510226646 FASTQ R2_L005 unaligned CPTAC3 e029eda1-f5a9-4e79-8ba3-65c0d6c76042 c28fd26f03e834d7ba24db21f25fe561 { 'aliquot_tag': 'ALQ_b1e7407d', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } C3N-04283.RNA-Seq.transcriptome.A.hg38 C3N-04283 PDA RNA-Seq tissue_normal CPT0247050008 489e748d-89a5-4e86-8324-f4e190d9465d.rna_seq.transcriptome.gdc_realn.bam 12502097571 BAM transcriptome harmonized CPTAC3 2dbd1601-994b-4857-a9ea-27f65e6c894b 538452b38a36496cdba906fe1ce59e09 { 'aliquot_tag': 'ALQ_b1e7407d', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04283.RNA-Seq.transcriptome.T.hg38 C3N-04283 PDA RNA-Seq tumor CPT0247040006 2cf79d6d-274a-4e2f-a163-df77b63f188c.rna_seq.transcriptome.gdc_realn.bam 12159907215 BAM transcriptome harmonized CPTAC3 55c55916-1175-49e2-8cab-b1525c18c432 de2c516f842c04514562026cb5aa662a { 'aliquot_tag': 'ALQ_6b3f44ca', 'gdc_sample_type': 'Primary Tumor' } C3N-04283.WGS.N C3N-04283 PDA WGS blood_normal CPT0247080002 CPT0247080002.WholeGenome.RP-1303.bam 57701659368 BAM aligned CPTAC3 62cf2fdb-aa4d-4f53-8435-4cd397e61c9c be4a2455786cd4b4fa05fac67818a965 { 'aliquot_tag': 'ALQ_a9a26dd2', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37716,9 +40112,9 @@ C3N-04284.MethArray.Red.T C3N-04284 PDA Methylation Array tumor CPT0247090006 20 C3N-04284.miRNA-Seq.T C3N-04284 PDA miRNA-Seq tumor CPT0247090013 190813_UNC32-K00270_0196_AH5MCWBBXY_TCGAAG_S23_L003_R1_001.unaln.bam 149310583 BAM unaligned CPTAC3 8ec06311-31b1-48db-b0fb-1e7b9a03451d 0bab03d9b6f99e2e2c43e2361c3296b1 { 'aliquot_tag': 'ALQ_fade45b5', 'gdc_sample_type': 'Primary Tumor' } C3N-04284.miRNA-Seq.T.hg38 C3N-04284 PDA miRNA-Seq tumor CPT0247090013 477e974f-bc22-441e-9b64-f15b6e2c8cdb_mirnaseq_gdc_realn.bam 170870153 BAM harmonized CPTAC3 ce8350c3-ca82-497b-b1f6-13e6d9e90cca 93f849e47a1b260c02c7f14c7d3399e0 { 'aliquot_tag': 'ALQ_fade45b5', 'gdc_sample_type': 'Primary Tumor' } C3N-04284.RNA-Seq.chimeric.T.hg38 C3N-04284 PDA RNA-Seq tumor CPT0247090013 722f42d4-1a30-4785-84b6-3ecbbb444829.rna_seq.chimeric.gdc_realn.bam 28773705 BAM chimeric harmonized CPTAC3 3c7b0dc0-0ae4-4a49-a82c-f7a9be7f6ddf b6e2a1f50a792ceecebc64c570baafce { 'aliquot_tag': 'ALQ_fade45b5', 'gdc_sample_type': 'Primary Tumor' } -C3N-04284.RNA-Seq.genomic.T.hg38 C3N-04284 PDA RNA-Seq tumor CPT0247090013 722f42d4-1a30-4785-84b6-3ecbbb444829.rna_seq.genomic.gdc_realn.bam 7886783443 BAM genomic harmonized CPTAC3 64107c48-e3fb-4553-b492-1898a8734437 b57f79fcf326af37ed9e7bfa10a926f9 { 'aliquot_tag': 'ALQ_fade45b5', 'gdc_sample_type': 'Primary Tumor' } -C3N-04284.RNA-Seq.R1_L003.T C3N-04284 PDA RNA-Seq tumor CPT0247090013 190715_UNC31-K00269_0232_BH7H7CBBXY_GATTCTGC-GACGAGAG_S9_L003_R1_001.fastq.gz 3752966426 FASTQ R1_L003 unaligned CPTAC3 54995544-cea1-42b1-9af1-0c6fd5b2727d 1c6b47f1c52286e384f5bc3960f8c7eb { 'aliquot_tag': 'ALQ_fade45b5', 'gdc_sample_type': 'Primary Tumor' } -C3N-04284.RNA-Seq.R2_L003.T C3N-04284 PDA RNA-Seq tumor CPT0247090013 190715_UNC31-K00269_0232_BH7H7CBBXY_GATTCTGC-GACGAGAG_S9_L003_R2_001.fastq.gz 3852584043 FASTQ R2_L003 unaligned CPTAC3 c7f1226b-4f3f-46c0-9361-c778198eff96 0a37b57ce1804d8a8423339843949c0d { 'aliquot_tag': 'ALQ_fade45b5', 'gdc_sample_type': 'Primary Tumor' } +C3N-04284.RNA-Seq.genomic.T.hg38 C3N-04284 PDA RNA-Seq tumor CPT0247090013 722f42d4-1a30-4785-84b6-3ecbbb444829.rna_seq.genomic.gdc_realn.bam 7886783443 BAM genomic harmonized CPTAC3 43f8c6d4-7317-4efc-9aa5-631d11354b23 b57f79fcf326af37ed9e7bfa10a926f9 { 'aliquot_tag': 'ALQ_fade45b5', 'gdc_sample_type': 'Primary Tumor' } +C3N-04284.RNA-Seq.R1_L003.T C3N-04284 PDA RNA-Seq tumor CPT0247090013 190715_UNC31-K00269_0232_BH7H7CBBXY_GATTCTGC-GACGAGAG_S9_L003_R1_001.fastq.gz 3752966426 FASTQ R1_L003 unaligned CPTAC3 54995544-cea1-42b1-9af1-0c6fd5b2727d 1c6b47f1c52286e384f5bc3960f8c7eb { 'aliquot_tag': 'ALQ_fade45b5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-04284.RNA-Seq.R2_L003.T C3N-04284 PDA RNA-Seq tumor CPT0247090013 190715_UNC31-K00269_0232_BH7H7CBBXY_GATTCTGC-GACGAGAG_S9_L003_R2_001.fastq.gz 3852584043 FASTQ R2_L003 unaligned CPTAC3 c7f1226b-4f3f-46c0-9361-c778198eff96 0a37b57ce1804d8a8423339843949c0d { 'aliquot_tag': 'ALQ_fade45b5', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } C3N-04284.RNA-Seq.transcriptome.T.hg38 C3N-04284 PDA RNA-Seq tumor CPT0247090013 722f42d4-1a30-4785-84b6-3ecbbb444829.rna_seq.transcriptome.gdc_realn.bam 10906831101 BAM transcriptome harmonized CPTAC3 d90ac12b-5f40-402a-b07d-7654cb98aa9f 4e6a6636146a8126a52c173b81ee77b0 { 'aliquot_tag': 'ALQ_fade45b5', 'gdc_sample_type': 'Primary Tumor' } C3N-04284.WGS.N C3N-04284 PDA WGS blood_normal CPT0247130002 CPT0247130002.WholeGenome.RP-1303.bam 64323938003 BAM aligned CPTAC3 375b14c1-a31d-4a1e-81ba-2004483156bb 2f1e3652b618562d04e14bc37d119312 { 'aliquot_tag': 'ALQ_152e8f66', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04284.WGS.N.hg38 C3N-04284 PDA WGS blood_normal CPT0247130002 267e0dfc-7fad-4927-9713-c9930f88228e_wgs_gdc_realn.bam 92759383551 BAM harmonized CPTAC3 1159f63b-46c4-4644-9f13-31db06ddda11 908e762a2c2b8823f0f3eaa59d619e3a { 'aliquot_tag': 'ALQ_152e8f66', 'gdc_sample_type': 'Blood Derived Normal' } @@ -37728,17 +40124,20 @@ C3N-04284.WXS.N C3N-04284 PDA WXS blood_normal CPT0247130002 CPT0247130002.Whole C3N-04284.WXS.N.hg38 C3N-04284 PDA WXS blood_normal CPT0247130002 267e0dfc-7fad-4927-9713-c9930f88228e_wxs_gdc_realn.bam 31901277566 BAM harmonized CPTAC3 dad34357-4344-40ce-b9e5-794565a9c387 faca712c5b1553fcde076d0ae0ccec06 { 'aliquot_tag': 'ALQ_152e8f66', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04284.WXS.T C3N-04284 PDA WXS tumor CPT0247090006 CPT0247090006.WholeExome.RP-1303.bam 30050208600 BAM aligned CPTAC3 2ed8b8e0-b440-47ee-98ba-6229fdaecf6d 8d599e7e3337050c76360c3621bfa07a { 'aliquot_tag': 'ALQ_93af807b', 'gdc_sample_type': 'Primary Tumor' } C3N-04284.WXS.T.hg38 C3N-04284 PDA WXS tumor CPT0247090006 57a37074-e98a-44e8-bd51-641dce6ec71a_wxs_gdc_realn.bam 40765262197 BAM harmonized CPTAC3 5bedf850-c4c7-4223-bb3e-5bc9eb227787 7572343c3e123379a98a67744dce0711 { 'aliquot_tag': 'ALQ_93af807b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04288.RNA-Seq.R1_.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R1_001.fastq.gz 6458078126 FASTQ R1_ unaligned CPTAC3 739c7d8c-9cf6-42fe-ac40-e9aa4e714697 56bad53ac19dd1f71bd6c2805eb57215 { 'aliquot_tag': 'ALQ_36d3412f', 'gdc_sample_type': 'Primary Tumor' } -C3N-04288.RNA-Seq.R2_.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R2_001.fastq.gz 6736441288 FASTQ R2_ unaligned CPTAC3 7769ab5f-e80e-4d7c-b204-e26c8dd7a925 552ba651ed1778af39bcd44d024bbf98 { 'aliquot_tag': 'ALQ_36d3412f', 'gdc_sample_type': 'Primary Tumor' } +C3N-04288.RNA-Seq.chimeric.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.chimeric.gdc_realn.bam 117514977 BAM chimeric harmonized CPTAC3 f3fcc9c9-14c1-46a6-85bb-a35e583cd2be 67e0c843105b4c580733c3de0cfea430 { 'aliquot_tag': 'ALQ_36d3412f', 'gdc_sample_type': 'Primary Tumor' } +C3N-04288.RNA-Seq.genomic.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.genomic.gdc_realn.bam 8642687385 BAM genomic harmonized CPTAC3 1c0f9685-9856-4611-af95-532f95b957c6 ea8b872b83f5b56ea4bafe6afca8b2bd { 'aliquot_tag': 'ALQ_36d3412f', 'gdc_sample_type': 'Primary Tumor' } +C3N-04288.RNA-Seq.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R1_001.fastq.gz 6458078126 FASTQ unaligned CPTAC3 739c7d8c-9cf6-42fe-ac40-e9aa4e714697 56bad53ac19dd1f71bd6c2805eb57215 +C3N-04288.RNA-Seq.T C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 20210729_P3_E8_WB7988-Plate3_S56_R2_001.fastq.gz 6736441288 FASTQ unaligned CPTAC3 7769ab5f-e80e-4d7c-b204-e26c8dd7a925 552ba651ed1778af39bcd44d024bbf98 +C3N-04288.RNA-Seq.transcriptome.T.hg38 C3N-04288 HNSCC RNA-Seq tumor CPT0354430001 b929d527-b920-4373-9428-0e763506774e.rna_seq.transcriptome.gdc_realn.bam 6327404540 BAM transcriptome harmonized CPTAC3 b18906aa-c9fa-4b98-8d86-781dd3abf6dd 76c48f78c8f261f1dd0404545fb19964 { 'aliquot_tag': 'ALQ_36d3412f', 'gdc_sample_type': 'Primary Tumor' } C3N-04312.MethArray.Green.T C3N-04312 GBM Methylation Array tumor CPT0285670006 204372030011_R01C01_Grn.idat 13677890 IDAT Green NA CPTAC3 66bf3820-3c75-417b-863f-86e0b1e44443 3f5ce1fad8fd5c4893cd42647606cca8 { 'aliquot_tag': 'ALQ_3af6d961', 'gdc_sample_type': 'Primary Tumor' } C3N-04312.MethArray.Red.T C3N-04312 GBM Methylation Array tumor CPT0285670006 204372030011_R01C01_Red.idat 13677890 IDAT Red NA CPTAC3 0d747cb9-cda6-4975-af25-5e0b39b351c7 67254b80bea4828ea03573eab55d48e8 { 'aliquot_tag': 'ALQ_3af6d961', 'gdc_sample_type': 'Primary Tumor' } C3N-04312.miRNA-Seq.T C3N-04312 GBM miRNA-Seq tumor CPT0285670009 200403_UNC31-K00269_0274_AHCF7GBBXY_AGTCAA_S37_L002_R1_001.unaln.bam 273660927 BAM unaligned CPTAC3 e7f6effd-e817-4e2b-8c06-576689dab185 3db8326fa4fc6c21832b4c4dc62c531d { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor' } C3N-04312.miRNA-Seq.T.hg38 C3N-04312 GBM miRNA-Seq tumor CPT0285670009 51030b5e-f536-41d9-acf7-8908bfc76d55_mirnaseq_gdc_realn.bam 307510606 BAM harmonized CPTAC3 5421b9bc-b81d-4d9d-97f9-c80fc5dd5b3f d6b98cce43056b89d0ccd3f7abe72722 { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor' } -C3N-04312.RNA-Seq.chimeric.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 fa1d1462-eb84-45be-aa85-7c6f26715516.rna_seq.chimeric.gdc_realn.bam 412061985 BAM chimeric harmonized CPTAC3 f56ad2d1-818e-4aad-929f-2a343a8c3391 14ffc9f1ec607132b52cd3c7a986b9eb { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor' } -C3N-04312.RNA-Seq.genomic.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 fa1d1462-eb84-45be-aa85-7c6f26715516.rna_seq.genomic.gdc_realn.bam 9520488499 BAM genomic harmonized CPTAC3 7b07bc1e-7ebd-4960-ac94-8b6fb6c213a0 38acca72566b361b7c5dc49015ad1243 { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor' } -C3N-04312.RNA-Seq.R1_L002.T C3N-04312 GBM RNA-Seq tumor CPT0285670009 200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R1_001.fastq.gz 4121966646 FASTQ R1_L002 unaligned CPTAC3 b9ffa766-00b4-43fc-9cdd-d894a2cdce9c 58c978bf02f4306e6d0708151bb8e7ea { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor' } -C3N-04312.RNA-Seq.R2_L002.T C3N-04312 GBM RNA-Seq tumor CPT0285670009 200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R2_001.fastq.gz 4900993669 FASTQ R2_L002 unaligned CPTAC3 7db80f50-b30d-44fc-9bc6-e03eb048a892 d6edbf143dafb72e6519f0966e519dce { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor' } -C3N-04312.RNA-Seq.transcriptome.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 fa1d1462-eb84-45be-aa85-7c6f26715516.rna_seq.transcriptome.gdc_realn.bam 8801171783 BAM transcriptome harmonized CPTAC3 e6ef7b9c-b6f5-4bb6-897e-d24c63147ac9 e34e94ded61b91d8ded5112943febfb2 { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor' } +C3N-04312.RNA-Seq.chimeric.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 c951618d-5ab1-4874-bb87-d3c16a28d791.rna_seq.chimeric.gdc_realn.bam 412012482 BAM chimeric harmonized CPTAC3 cbfd8fb4-027b-4a99-9615-b342027635b2 a26b016688ab93f240b2307fc37cabe7 { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor' } +C3N-04312.RNA-Seq.genomic.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 c951618d-5ab1-4874-bb87-d3c16a28d791.rna_seq.genomic.gdc_realn.bam 9522050418 BAM genomic harmonized CPTAC3 c8516ebf-2636-4711-9258-85b2abba1685 4759239345abb0c614c62a8145de8205 { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor' } +C3N-04312.RNA-Seq.R1_L002.T C3N-04312 GBM RNA-Seq tumor CPT0285670009 200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R1_001.fastq.gz 4121966646 FASTQ R1_L002 unaligned CPTAC3 b9ffa766-00b4-43fc-9cdd-d894a2cdce9c 58c978bf02f4306e6d0708151bb8e7ea { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-04312.RNA-Seq.R2_L002.T C3N-04312 GBM RNA-Seq tumor CPT0285670009 200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R2_001.fastq.gz 4900993669 FASTQ R2_L002 unaligned CPTAC3 7db80f50-b30d-44fc-9bc6-e03eb048a892 d6edbf143dafb72e6519f0966e519dce { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-04312.RNA-Seq.transcriptome.T.hg38 C3N-04312 GBM RNA-Seq tumor CPT0285670009 c951618d-5ab1-4874-bb87-d3c16a28d791.rna_seq.transcriptome.gdc_realn.bam 10048761309 BAM transcriptome harmonized CPTAC3 5a3e0587-83cd-4786-9d56-a28f288e7bc4 c035e3933ce4733c9639cb466d408fa8 { 'aliquot_tag': 'ALQ_aa49c4f0', 'gdc_sample_type': 'Primary Tumor' } C3N-04312.WGS.N C3N-04312 GBM WGS blood_normal CPT0280980002 CPT0280980002.WholeGenome.RP-2158.bam 23874939224 BAM aligned CPTAC3 9a3c3468-1221-4b91-bc33-9b090e555ab5 97a8ffb0f4066f0a6e88edb4b40cdbe6 { 'aliquot_tag': 'ALQ_1ca517db', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04312.WGS.N.hg38 C3N-04312 GBM WGS blood_normal CPT0280980002 37205469-4d6f-486b-905f-c54392d21b4f_wgs_gdc_realn.bam 71335743020 BAM harmonized CPTAC3 014f16a2-6c7b-4b66-b1a8-2e5579964f02 c062b3939d85c8d8449078c2a5bbe569 { 'aliquot_tag': 'ALQ_1ca517db', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04312.WGS.T C3N-04312 GBM WGS tumor CPT0285670006 CPT0285670006.WholeGenome.RP-2158.bam 26413654675 BAM aligned CPTAC3 74fffef0-59b5-41fd-8d10-2d385a875c65 93de20b937fb1e1a47c73b2b0af4e071 { 'aliquot_tag': 'ALQ_3af6d961', 'gdc_sample_type': 'Primary Tumor' } @@ -37755,16 +40154,16 @@ C3N-04382.miRNA-Seq.A C3N-04382 LUAD miRNA-Seq tissue_normal CPT0240680009 19072 C3N-04382.miRNA-Seq.A.hg38 C3N-04382 LUAD miRNA-Seq tissue_normal CPT0240680009 e2ada810-c2fc-401d-872d-1da25a151bf7_mirnaseq_gdc_realn.bam 217549822 BAM harmonized CPTAC3 eccd96b5-22f2-4460-a442-43874b5996db b7ea0942b234b7f37e02ec413a827319 { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04382.miRNA-Seq.T C3N-04382 LUAD miRNA-Seq tumor CPT0240670009 190722_UNC31-K00269_0234_AH7VGTBBXY_ATGTCA_S11_L007_R1_001.unaln.bam 209901696 BAM unaligned CPTAC3 dfc231e6-2717-49d4-ab55-66d28dd069df 2395a4c6ca6c63b6ccfa52122c8dbb44 { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor' } C3N-04382.miRNA-Seq.T.hg38 C3N-04382 LUAD miRNA-Seq tumor CPT0240670009 b9672af0-e3e2-4d29-bfb7-869e2cfd4ae8_mirnaseq_gdc_realn.bam 229685023 BAM harmonized CPTAC3 234930ac-bc75-42fb-af7c-4a1113c792be f486c0e56a4e3b9ce310b6b893035701 { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor' } -C3N-04382.RNA-Seq.chimeric.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 44b73019-73fa-4b87-979c-19ae610ea1cf.rna_seq.chimeric.gdc_realn.bam 34009216 BAM chimeric harmonized CPTAC3 3d03f26b-5b75-4cc2-8c37-1e6c3bb1e894 6fb4c4f474ba865ae874332b9a8cbc4d { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04382.RNA-Seq.chimeric.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 789068ab-c110-445e-bbdf-f16cdbee11c7.rna_seq.chimeric.gdc_realn.bam 35101960 BAM chimeric harmonized CPTAC3 aa587e31-5608-4de0-919a-c232b49ff1f6 744235aee0d236cc6de892909f2683db { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor' } -C3N-04382.RNA-Seq.genomic.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 44b73019-73fa-4b87-979c-19ae610ea1cf.rna_seq.genomic.gdc_realn.bam 11370595578 BAM genomic harmonized CPTAC3 3f218a11-7465-4d6d-a008-ec3f60012b9b f054e299496ea70e27ac68768bbc0bdd { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04382.RNA-Seq.genomic.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 789068ab-c110-445e-bbdf-f16cdbee11c7.rna_seq.genomic.gdc_realn.bam 10901508338 BAM genomic harmonized CPTAC3 0abceb39-0294-45b5-b7b1-0da90625fcc8 6ebc933247bd99619f468fe768d4bc9c { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor' } -C3N-04382.RNA-Seq.R1_L003.A C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 190607_UNC32-K00270_0178_AH773TBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4485057847 FASTQ R1_L003 unaligned CPTAC3 00b5e191-d32c-4209-8035-5d23acfffb95 75f0e085dc60a16bcb2bdefbcbf35c25 { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04382.RNA-Seq.R1_L008.T C3N-04382 LUAD RNA-Seq tumor CPT0240670009 190607_UNC32-K00270_0178_AH773TBBXY_TTGCCTAG-ACCACTTA_S29_L008_R1_001.fastq.gz 4348621087 FASTQ R1_L008 unaligned CPTAC3 413aaa51-c49d-4e56-a205-ec549d3edc8a 38d29d8bfd4e6f4fb6b10cef19a99d57 { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor' } -C3N-04382.RNA-Seq.R2_L003.A C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 190607_UNC32-K00270_0178_AH773TBBXY_TCATCCTT-AGCGAGCT_S9_L003_R2_001.fastq.gz 4643808549 FASTQ R2_L003 unaligned CPTAC3 453f8f6e-e73a-4c27-be16-4fe12ebe015c a81cdec946d036a9de0f522a955cf943 { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04382.RNA-Seq.R2_L008.T C3N-04382 LUAD RNA-Seq tumor CPT0240670009 190607_UNC32-K00270_0178_AH773TBBXY_TTGCCTAG-ACCACTTA_S29_L008_R2_001.fastq.gz 4813764072 FASTQ R2_L008 unaligned CPTAC3 872c5cfa-f7cd-4c40-abc0-b4f395034fa7 15814f17234aa23d4fa2f05151e4dba2 { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor' } -C3N-04382.RNA-Seq.transcriptome.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 44b73019-73fa-4b87-979c-19ae610ea1cf.rna_seq.transcriptome.gdc_realn.bam 7922503290 BAM transcriptome harmonized CPTAC3 7762020c-3f8a-44f9-a6ca-7c70e08d8742 924d6b490c6dd255309ab0e5bbaa531e { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04382.RNA-Seq.transcriptome.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 789068ab-c110-445e-bbdf-f16cdbee11c7.rna_seq.transcriptome.gdc_realn.bam 9665950362 BAM transcriptome harmonized CPTAC3 6a6721fa-afff-4992-a3a5-893455c20a5d 62813763e2401c2ce0e19eef7bc4c6de { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor' } +C3N-04382.RNA-Seq.chimeric.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 1d1b383f-1527-403c-b03c-dfef3a10ff5d.rna_seq.chimeric.gdc_realn.bam 34007452 BAM chimeric harmonized CPTAC3 eee24bcb-68b8-44b6-aa12-2964f29d4b7a 1a54259ce26ad3a08edc4175bfd21d2c { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04382.RNA-Seq.chimeric.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 7a39e845-71f4-4f7f-982a-8872d1862799.rna_seq.chimeric.gdc_realn.bam 35129982 BAM chimeric harmonized CPTAC3 91291122-e6c4-4304-8f47-93f6930adfb7 53b69aa8c3b28903a6da8ab213160a25 { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor' } +C3N-04382.RNA-Seq.genomic.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 1d1b383f-1527-403c-b03c-dfef3a10ff5d.rna_seq.genomic.gdc_realn.bam 11371395291 BAM genomic harmonized CPTAC3 5c3c0d7b-772b-4a7c-8e27-57c27389a34a fb0f97980ef5f601291e60ff8f4b1c1c { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04382.RNA-Seq.genomic.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 7a39e845-71f4-4f7f-982a-8872d1862799.rna_seq.genomic.gdc_realn.bam 10902825782 BAM genomic harmonized CPTAC3 451c3f20-879e-4a5b-827d-afa2a6078e26 3cfca24428bca4fb6e61740b9aabd2a7 { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor' } +C3N-04382.RNA-Seq.R1_L003.A C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 190607_UNC32-K00270_0178_AH773TBBXY_TCATCCTT-AGCGAGCT_S9_L003_R1_001.fastq.gz 4485057847 FASTQ R1_L003 unaligned CPTAC3 00b5e191-d32c-4209-8035-5d23acfffb95 75f0e085dc60a16bcb2bdefbcbf35c25 { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-04382.RNA-Seq.R1_L008.T C3N-04382 LUAD RNA-Seq tumor CPT0240670009 190607_UNC32-K00270_0178_AH773TBBXY_TTGCCTAG-ACCACTTA_S29_L008_R1_001.fastq.gz 4348621087 FASTQ R1_L008 unaligned CPTAC3 413aaa51-c49d-4e56-a205-ec549d3edc8a 38d29d8bfd4e6f4fb6b10cef19a99d57 { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L008' } +C3N-04382.RNA-Seq.R2_L003.A C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 190607_UNC32-K00270_0178_AH773TBBXY_TCATCCTT-AGCGAGCT_S9_L003_R2_001.fastq.gz 4643808549 FASTQ R2_L003 unaligned CPTAC3 453f8f6e-e73a-4c27-be16-4fe12ebe015c a81cdec946d036a9de0f522a955cf943 { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-04382.RNA-Seq.R2_L008.T C3N-04382 LUAD RNA-Seq tumor CPT0240670009 190607_UNC32-K00270_0178_AH773TBBXY_TTGCCTAG-ACCACTTA_S29_L008_R2_001.fastq.gz 4813764072 FASTQ R2_L008 unaligned CPTAC3 872c5cfa-f7cd-4c40-abc0-b4f395034fa7 15814f17234aa23d4fa2f05151e4dba2 { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L008' } +C3N-04382.RNA-Seq.transcriptome.A.hg38 C3N-04382 LUAD RNA-Seq tissue_normal CPT0240680009 1d1b383f-1527-403c-b03c-dfef3a10ff5d.rna_seq.transcriptome.gdc_realn.bam 8922710202 BAM transcriptome harmonized CPTAC3 0a1fa6bc-b28b-421d-bf3c-d235af553b13 20c3e8151138a2518fcc37c1deeede2a { 'aliquot_tag': 'ALQ_2d8e69c9', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04382.RNA-Seq.transcriptome.T.hg38 C3N-04382 LUAD RNA-Seq tumor CPT0240670009 7a39e845-71f4-4f7f-982a-8872d1862799.rna_seq.transcriptome.gdc_realn.bam 10945797223 BAM transcriptome harmonized CPTAC3 a6b4312a-51b8-4af8-8da8-a6f1ed6ecf3b aafd680f997f33b036fae9d6ff5325f6 { 'aliquot_tag': 'ALQ_afdefe18', 'gdc_sample_type': 'Primary Tumor' } C3N-04382.WGS.N C3N-04382 LUAD WGS blood_normal CPT0241700002 CPT0241700002.WholeGenome.RP-1303.bam 63447764583 BAM aligned CPTAC3 3ed2e15b-3c20-41b4-b551-4c5f113f7974 59fa2f81925567f50896b6bf74d5705f { 'aliquot_tag': 'ALQ_e7072391', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04382.WGS.N.hg38 C3N-04382 LUAD WGS blood_normal CPT0241700002 88cf49b3-0b2d-4a5e-afa5-aaae77123c55_wgs_gdc_realn.bam 92048733883 BAM harmonized CPTAC3 ca3a7c80-24b2-4eef-a824-158c4f53e2af 10fd3e822356e9cfd3c5e837df83d1b3 { 'aliquot_tag': 'ALQ_e7072391', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04382.WGS.T C3N-04382 LUAD WGS tumor CPT0240670006 CPT0240670006.WholeGenome.RP-1303.bam 77762274116 BAM aligned CPTAC3 490a91c9-0bca-4e29-ba25-473dfac13069 ee2b4bcb8992164126ad8365f06de6f6 { 'aliquot_tag': 'ALQ_3f61e389', 'gdc_sample_type': 'Primary Tumor' } @@ -37783,16 +40182,16 @@ C3N-04384.miRNA-Seq.A C3N-04384 LSCC miRNA-Seq tissue_normal CPT0331120009 20120 C3N-04384.miRNA-Seq.A.hg38 C3N-04384 LSCC miRNA-Seq tissue_normal CPT0331120009 fad742ef-f6b8-4f67-a941-d673c5574b23_mirnaseq_gdc_realn.bam 338703151 BAM harmonized CPTAC3 f21a3722-0862-41db-a821-97d481ac8f4e 2563230ea0b0ab17914ade6a720d91b4 { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04384.miRNA-Seq.T C3N-04384 LSCC miRNA-Seq tumor CPT0331100010 201209_UNC32-K00270_0265_AHJ55WBBXY_CCGTCC_S28_L007_R1_001.unaln.bam 270836115 BAM unaligned CPTAC3 5238c193-62a3-4b0a-9a58-8ea6ac5426a3 b485351d70d7e25ffcfb8fa2dcf5cfe5 { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor' } C3N-04384.miRNA-Seq.T.hg38 C3N-04384 LSCC miRNA-Seq tumor CPT0331100010 0e7c356b-26f7-4382-adca-df99e755f4cb_mirnaseq_gdc_realn.bam 295928689 BAM harmonized CPTAC3 714cc74c-33ac-4d07-a082-ce26ad43bfd2 9aa277a683e8e9d863abcacc01c4fb40 { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor' } -C3N-04384.RNA-Seq.chimeric.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 39e1fc23-aca7-41ea-aae6-acb63b8f63f8.rna_seq.chimeric.gdc_realn.bam 142203260 BAM chimeric harmonized CPTAC3 e0b88c91-a6d3-416b-a8b4-ac8d05278dd3 5c6c73c6303f8b6f0caad8a186c74ac4 { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04384.RNA-Seq.chimeric.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 8a596c1f-8e63-4414-a759-9b23228af451.rna_seq.chimeric.gdc_realn.bam 88692849 BAM chimeric harmonized CPTAC3 07a3eebf-8e29-477b-974a-7c46a79d8a64 02deae2d01917273ca1a59d18db74732 { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor' } -C3N-04384.RNA-Seq.genomic.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 39e1fc23-aca7-41ea-aae6-acb63b8f63f8.rna_seq.genomic.gdc_realn.bam 8046310678 BAM genomic harmonized CPTAC3 a7eae7e8-da77-44d9-a8fe-cffaa7567842 d3012158dbff119194bb50349d14dbe2 { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04384.RNA-Seq.genomic.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 8a596c1f-8e63-4414-a759-9b23228af451.rna_seq.genomic.gdc_realn.bam 6228735243 BAM genomic harmonized CPTAC3 c408e420-a390-4a46-a93c-a6d5d7a2a388 0c98265937ce84836de20c334eb5ca78 { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor' } -C3N-04384.RNA-Seq.R1_L001.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R1_001.fastq.gz 4089256863 FASTQ R1_L001 unaligned CPTAC3 b2be76d3-2780-4b37-ac3d-00b8275570a3 eada057439b909e6f2b92bf272dbd2b9 { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04384.RNA-Seq.R1_L007.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R1_001.fastq.gz 3161150739 FASTQ R1_L007 unaligned CPTAC3 2efb8b86-7963-494b-8cf8-070601581e4c 86a5337cd914c1c3d1d949e9668515f4 { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor' } -C3N-04384.RNA-Seq.R2_L001.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R2_001.fastq.gz 4544440132 FASTQ R2_L001 unaligned CPTAC3 54e12111-0171-43cc-bc0a-2258d1d9baa8 b35dc57faa81321f6b37ed33a7f0166c { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04384.RNA-Seq.R2_L007.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R2_001.fastq.gz 3461343173 FASTQ R2_L007 unaligned CPTAC3 e5cb1010-199f-44cf-b523-6fcade44dda5 2b05c5641b920de75ee424bfd51dfe22 { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor' } -C3N-04384.RNA-Seq.transcriptome.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 39e1fc23-aca7-41ea-aae6-acb63b8f63f8.rna_seq.transcriptome.gdc_realn.bam 8830465777 BAM transcriptome harmonized CPTAC3 5b8388fd-6981-4628-b05f-e189e6e7a95c f971afdb4039d704306a56532d4e86de { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04384.RNA-Seq.transcriptome.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 8a596c1f-8e63-4414-a759-9b23228af451.rna_seq.transcriptome.gdc_realn.bam 9540848532 BAM transcriptome harmonized CPTAC3 928bb7a3-9e8c-4775-9abf-1ed5b279d516 9fcb0933e6a16ff1e5d26c6ed876792e { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor' } +C3N-04384.RNA-Seq.chimeric.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 4f3fa9fd-9643-480c-9487-dc087bc38198.rna_seq.chimeric.gdc_realn.bam 142193468 BAM chimeric harmonized CPTAC3 f3bfe56d-c950-4bc8-a3d1-da3fbfaee0fe 47b4f8a9c4a86361d52c9c43842ad174 { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04384.RNA-Seq.chimeric.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 951ca347-eee0-4592-9ca0-9b2ba30c8b58.rna_seq.chimeric.gdc_realn.bam 88693789 BAM chimeric harmonized CPTAC3 2fd5f7d1-2909-4f0c-a6a5-a23cd35ae95b 497510e9c300facd4c1a47d5cccd9237 { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor' } +C3N-04384.RNA-Seq.genomic.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 4f3fa9fd-9643-480c-9487-dc087bc38198.rna_seq.genomic.gdc_realn.bam 8054413168 BAM genomic harmonized CPTAC3 6ff08ff4-f786-4e93-b1e6-4161dae46b8f b4da4d210301463fb393c23807e991eb { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04384.RNA-Seq.genomic.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 951ca347-eee0-4592-9ca0-9b2ba30c8b58.rna_seq.genomic.gdc_realn.bam 6236355045 BAM genomic harmonized CPTAC3 3184f16b-cd86-41bf-bcea-e397bb169127 bc1acd1cefbe744ade064178383dab49 { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor' } +C3N-04384.RNA-Seq.R1_L001.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R1_001.fastq.gz 4089256863 FASTQ R1_L001 unaligned CPTAC3 b2be76d3-2780-4b37-ac3d-00b8275570a3 eada057439b909e6f2b92bf272dbd2b9 { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L001' } +C3N-04384.RNA-Seq.R1_L007.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R1_001.fastq.gz 3161150739 FASTQ R1_L007 unaligned CPTAC3 2efb8b86-7963-494b-8cf8-070601581e4c 86a5337cd914c1c3d1d949e9668515f4 { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-04384.RNA-Seq.R2_L001.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R2_001.fastq.gz 4544440132 FASTQ R2_L001 unaligned CPTAC3 54e12111-0171-43cc-bc0a-2258d1d9baa8 b35dc57faa81321f6b37ed33a7f0166c { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L001' } +C3N-04384.RNA-Seq.R2_L007.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R2_001.fastq.gz 3461343173 FASTQ R2_L007 unaligned CPTAC3 e5cb1010-199f-44cf-b523-6fcade44dda5 2b05c5641b920de75ee424bfd51dfe22 { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-04384.RNA-Seq.transcriptome.A.hg38 C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 4f3fa9fd-9643-480c-9487-dc087bc38198.rna_seq.transcriptome.gdc_realn.bam 10056724903 BAM transcriptome harmonized CPTAC3 0fd86dd2-72c1-47ed-99ed-5972c813eb7e 2cefe7fe59ac22c3f5ada0b36a2ded75 { 'aliquot_tag': 'ALQ_c1f2573e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04384.RNA-Seq.transcriptome.T.hg38 C3N-04384 LSCC RNA-Seq tumor CPT0331100010 951ca347-eee0-4592-9ca0-9b2ba30c8b58.rna_seq.transcriptome.gdc_realn.bam 10790719891 BAM transcriptome harmonized CPTAC3 d11abf2c-b4a7-4a8a-bd7b-f202e3eb3f1a ac0d0ddd44bebc7af8c83f553caa183d { 'aliquot_tag': 'ALQ_dbf58dbb', 'gdc_sample_type': 'Primary Tumor' } C3N-04384.WGS.N C3N-04384 LSCC WGS blood_normal CPT0332110002 CPT0332110002.WholeGenome.RP-2158.bam 26808051879 BAM aligned CPTAC3 f2d7d0be-9e8e-4b4b-a101-c7ad831863e8 5ac075b829135c6c5deef4f472bd5370 { 'aliquot_tag': 'ALQ_2068eefb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04384.WGS.N.hg38 C3N-04384 LSCC WGS blood_normal CPT0332110002 1ea9100f-68e8-426c-8762-c3a317838e91_wgs_gdc_realn.bam 78453947533 BAM harmonized CPTAC3 ca53426a-b4f8-4919-9a13-ab0c1fb2c613 ebd91640375e411aac935ecfd31a9ca5 { 'aliquot_tag': 'ALQ_2068eefb', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04384.WGS.T C3N-04384 LSCC WGS tumor CPT0331100007 CPT0331100007.WholeGenome.RP-2158.bam 24242977076 BAM aligned CPTAC3 d41e33d2-4f07-4464-af9e-85e6a9dfb964 1691ca01b9754b7e55fa40bc21f538b1 { 'aliquot_tag': 'ALQ_5c8a2959', 'gdc_sample_type': 'Primary Tumor' } @@ -37811,16 +40210,16 @@ C3N-04445.miRNA-Seq.A C3N-04445 LSCC miRNA-Seq tissue_normal CPT0332540009 20120 C3N-04445.miRNA-Seq.A.hg38 C3N-04445 LSCC miRNA-Seq tissue_normal CPT0332540009 90ba4852-f665-4035-9ac9-074ea01ab6cc_mirnaseq_gdc_realn.bam 339224928 BAM harmonized CPTAC3 50221f14-2a74-4358-837d-334ed81737c6 ec573249ba146fa152fa2a0545530f27 { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04445.miRNA-Seq.T C3N-04445 LSCC miRNA-Seq tumor CPT0332520010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTCCGC_S34_L007_R1_001.unaln.bam 282240822 BAM unaligned CPTAC3 0fcbaf7f-cc5f-4ef4-9883-5dc7580149d3 2c575a96049594f54772d16d5b322652 { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor' } C3N-04445.miRNA-Seq.T.hg38 C3N-04445 LSCC miRNA-Seq tumor CPT0332520010 07e501ec-8f57-4271-90f0-911fea16a5fc_mirnaseq_gdc_realn.bam 305741236 BAM harmonized CPTAC3 48a371d6-30f2-4795-943c-b50bb6b71bae 352a137a119ea095ed6d19b8e8ff9c0d { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor' } -C3N-04445.RNA-Seq.chimeric.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 67fb25c2-85e6-4487-a678-b7aaf9249979.rna_seq.chimeric.gdc_realn.bam 187889936 BAM chimeric harmonized CPTAC3 23e14b4a-f4e1-4057-9602-7838ea07144b b18495c44623fc520ab815c6e2471a43 { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04445.RNA-Seq.chimeric.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 6a817e30-484d-487d-b3b1-733e2b52c86a.rna_seq.chimeric.gdc_realn.bam 466425652 BAM chimeric harmonized CPTAC3 a30637d8-82f4-4a9a-a0b0-d1ea5abd6ca0 2ddc8debfd91633acc55da84398860ef { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor' } -C3N-04445.RNA-Seq.genomic.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 67fb25c2-85e6-4487-a678-b7aaf9249979.rna_seq.genomic.gdc_realn.bam 6922769709 BAM genomic harmonized CPTAC3 217b560a-10ec-48c8-8b8f-c815f7e811c2 7a91ab47fb6ca5b5c2a3d547ce37a916 { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04445.RNA-Seq.genomic.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 6a817e30-484d-487d-b3b1-733e2b52c86a.rna_seq.genomic.gdc_realn.bam 8639991171 BAM genomic harmonized CPTAC3 205d3557-7f00-4e29-9271-bb08a0a7822b ed613b60d2232ebecb713d4771face8e { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor' } -C3N-04445.RNA-Seq.R1_L003.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R1_001.fastq.gz 3367376011 FASTQ R1_L003 unaligned CPTAC3 799ebf27-76fc-441b-a909-acdd6ac3b457 6d2e0eaac75bfa4fd6b207a795196551 { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04445.RNA-Seq.R1_L006.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R1_001.fastq.gz 4184341827 FASTQ R1_L006 unaligned CPTAC3 765a6172-1c0f-4bad-b7a8-da971e31402d c34c1bb187a1f89d0f3f0e7426004123 { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor' } -C3N-04445.RNA-Seq.R2_L003.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R2_001.fastq.gz 3560512926 FASTQ R2_L003 unaligned CPTAC3 2dd3b8ff-9556-4d0f-9a0d-32232c124842 bb36286628aa267a9bfa458c9bf2189a { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04445.RNA-Seq.R2_L006.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R2_001.fastq.gz 4696197419 FASTQ R2_L006 unaligned CPTAC3 843e3841-e979-4135-b0dc-1b7f97be3091 4118d1a7d47f3e932f2e8e35afb34524 { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor' } -C3N-04445.RNA-Seq.transcriptome.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 67fb25c2-85e6-4487-a678-b7aaf9249979.rna_seq.transcriptome.gdc_realn.bam 8574046841 BAM transcriptome harmonized CPTAC3 3833b441-a331-424f-abfc-081f16ab1315 794134c5a6a5695040e05ad63a74c4af { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04445.RNA-Seq.transcriptome.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 6a817e30-484d-487d-b3b1-733e2b52c86a.rna_seq.transcriptome.gdc_realn.bam 9272749074 BAM transcriptome harmonized CPTAC3 8eaf41e0-993b-4a01-9c85-e89a17353582 9b2c2df90efef241e23aa716f05142ba { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor' } +C3N-04445.RNA-Seq.chimeric.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 b6e8a6f3-01fe-498d-975b-5896656a1bf5.rna_seq.chimeric.gdc_realn.bam 187884085 BAM chimeric harmonized CPTAC3 0ce0f8ef-17cc-4e74-a0df-7329f240cce7 c9faa37be1c4150410214d850d0f6f7f { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04445.RNA-Seq.chimeric.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 8041f635-85f3-4078-ad0a-5079ceda0e5c.rna_seq.chimeric.gdc_realn.bam 466483724 BAM chimeric harmonized CPTAC3 570c9972-7f81-43dc-9adb-f3f05af590d4 73b4b17d7a911829e37e798df97bd94f { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor' } +C3N-04445.RNA-Seq.genomic.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 b6e8a6f3-01fe-498d-975b-5896656a1bf5.rna_seq.genomic.gdc_realn.bam 6931970388 BAM genomic harmonized CPTAC3 a58d8145-8406-4812-9bf4-a3517de9e478 8b4673cca7365957f17d62044e6d2894 { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04445.RNA-Seq.genomic.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 8041f635-85f3-4078-ad0a-5079ceda0e5c.rna_seq.genomic.gdc_realn.bam 8646989811 BAM genomic harmonized CPTAC3 1df864de-7a57-4514-b212-0f93c6d8a7cb 21d745fa5ab8a8b7ed4520bc7b58a875 { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor' } +C3N-04445.RNA-Seq.R1_L003.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R1_001.fastq.gz 3367376011 FASTQ R1_L003 unaligned CPTAC3 799ebf27-76fc-441b-a909-acdd6ac3b457 6d2e0eaac75bfa4fd6b207a795196551 { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-04445.RNA-Seq.R1_L006.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R1_001.fastq.gz 4184341827 FASTQ R1_L006 unaligned CPTAC3 765a6172-1c0f-4bad-b7a8-da971e31402d c34c1bb187a1f89d0f3f0e7426004123 { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-04445.RNA-Seq.R2_L003.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R2_001.fastq.gz 3560512926 FASTQ R2_L003 unaligned CPTAC3 2dd3b8ff-9556-4d0f-9a0d-32232c124842 bb36286628aa267a9bfa458c9bf2189a { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-04445.RNA-Seq.R2_L006.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R2_001.fastq.gz 4696197419 FASTQ R2_L006 unaligned CPTAC3 843e3841-e979-4135-b0dc-1b7f97be3091 4118d1a7d47f3e932f2e8e35afb34524 { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-04445.RNA-Seq.transcriptome.A.hg38 C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 b6e8a6f3-01fe-498d-975b-5896656a1bf5.rna_seq.transcriptome.gdc_realn.bam 9768041159 BAM transcriptome harmonized CPTAC3 1922fcfa-e174-445a-9cf8-02fea26c2885 8bba9aae18528b6ccdcf6ed23e5430cb { 'aliquot_tag': 'ALQ_e4cbfa15', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04445.RNA-Seq.transcriptome.T.hg38 C3N-04445 LSCC RNA-Seq tumor CPT0332520010 8041f635-85f3-4078-ad0a-5079ceda0e5c.rna_seq.transcriptome.gdc_realn.bam 10537913755 BAM transcriptome harmonized CPTAC3 a7a05d37-db91-4199-9966-e27a4f28c2cb e4b6b29074cab75cdcd2c3473cc3d001 { 'aliquot_tag': 'ALQ_b4c8650', 'gdc_sample_type': 'Primary Tumor' } C3N-04445.WGS.N C3N-04445 LSCC WGS blood_normal CPT0332610002 CPT0332610002.WholeGenome.RP-2158.bam 25594571712 BAM aligned CPTAC3 90cc388f-ca4b-4602-a62c-b307b6360204 a37a6c7948ce33d42067a3c5e8c0d883 { 'aliquot_tag': 'ALQ_3d6dde43', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04445.WGS.N.hg38 C3N-04445 LSCC WGS blood_normal CPT0332610002 8a821d56-7c74-4f7a-95ee-471dc379af7e_wgs_gdc_realn.bam 79378403146 BAM harmonized CPTAC3 b45fb418-a93c-4bc5-a0e5-552665c85f13 6ce9132cb22e6827add7765879d79867 { 'aliquot_tag': 'ALQ_3d6dde43', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04445.WGS.T C3N-04445 LSCC WGS tumor CPT0332520007 CPT0332520007.WholeGenome.RP-2158.bam 24290785613 BAM aligned CPTAC3 be2e7d9f-666e-440a-a149-803b96dddea3 8e8b53714a0be8143ce55baf1c8589af { 'aliquot_tag': 'ALQ_8c3322b2', 'gdc_sample_type': 'Primary Tumor' } @@ -37839,16 +40238,16 @@ C3N-04449.miRNA-Seq.A C3N-04449 LSCC miRNA-Seq tissue_normal CPT0332740009 20120 C3N-04449.miRNA-Seq.A.hg38 C3N-04449 LSCC miRNA-Seq tissue_normal CPT0332740009 3b56e75a-a0b1-4ea7-9fcb-e9a2d57a3390_mirnaseq_gdc_realn.bam 291715755 BAM harmonized CPTAC3 ac1a46f3-2103-41ad-8afa-b8be369b81d0 8a2195dab8fb8076a06ce99afba2f44f { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04449.miRNA-Seq.T C3N-04449 LSCC miRNA-Seq tumor CPT0332720010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTGAAA_S35_L007_R1_001.unaln.bam 268242791 BAM unaligned CPTAC3 1fe4b221-de07-4a90-b9ec-d752c14c05c5 89c6febd3e39cd1539e2bb92b22975df { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor' } C3N-04449.miRNA-Seq.T.hg38 C3N-04449 LSCC miRNA-Seq tumor CPT0332720010 fa41f2d5-16a2-48bd-8c0f-005d198afe31_mirnaseq_gdc_realn.bam 297093426 BAM harmonized CPTAC3 472e8c5a-069a-4c5e-8c51-db8b7d2eaf84 59d381fa87275676c434824ef10932bf { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04449.RNA-Seq.chimeric.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 1701e619-ffd7-4bc5-afc9-b38b56b81217.rna_seq.chimeric.gdc_realn.bam 253702565 BAM chimeric harmonized CPTAC3 42f1fb11-eca9-443e-a812-5fd26ed395a9 6d00330430b6da0a3e6fbfef06b73bd6 { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04449.RNA-Seq.chimeric.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 9f6ca44a-f71e-4f0c-811d-3b0f91679597.rna_seq.chimeric.gdc_realn.bam 449335824 BAM chimeric harmonized CPTAC3 18e9e32f-97c6-41c3-8ac2-8448b2c5c7df 8d3478d30e33bb520967f26b2af9434e { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04449.RNA-Seq.genomic.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 1701e619-ffd7-4bc5-afc9-b38b56b81217.rna_seq.genomic.gdc_realn.bam 9539190205 BAM genomic harmonized CPTAC3 02f87e0e-a651-48e8-a0de-c498e20488ad 2fdd503214df8ba6df81c11e79761586 { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04449.RNA-Seq.genomic.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 9f6ca44a-f71e-4f0c-811d-3b0f91679597.rna_seq.genomic.gdc_realn.bam 7695826216 BAM genomic harmonized CPTAC3 d1ee9dd4-421e-4d1d-95fa-9bb66931526c 3b1d81d5d6b5b6872620edfdc1b7d5d3 { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04449.RNA-Seq.R1_L003.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R1_001.fastq.gz 4691535789 FASTQ R1_L003 unaligned CPTAC3 a9eddd7c-e293-40f3-9bdc-ffe657565d83 5baa4bf04d9b48579ff426c04b58273b { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04449.RNA-Seq.R1_L006.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R1_001.fastq.gz 3838291981 FASTQ R1_L006 unaligned CPTAC3 c10721f5-e95f-40de-8b5d-908d955cead2 4fb04572c6568299728933bdf9eea9fd { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04449.RNA-Seq.R2_L003.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R2_001.fastq.gz 4910314542 FASTQ R2_L003 unaligned CPTAC3 b04a1909-634a-4fce-8ed4-9224e26ccbda f4da99cbea5205f9f854f342319c4487 { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04449.RNA-Seq.R2_L006.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R2_001.fastq.gz 4245083460 FASTQ R2_L006 unaligned CPTAC3 1c1d820c-2e0a-449d-8d17-d6c10f2f732b 41be9a98fed6d4fdb7f44a3fed019329 { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04449.RNA-Seq.transcriptome.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 1701e619-ffd7-4bc5-afc9-b38b56b81217.rna_seq.transcriptome.gdc_realn.bam 11220089271 BAM transcriptome harmonized CPTAC3 2dc2733a-8366-44b5-8614-f01555f9d3e8 a7c0100b01cbf7822560c4527d9a6cfd { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04449.RNA-Seq.transcriptome.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 9f6ca44a-f71e-4f0c-811d-3b0f91679597.rna_seq.transcriptome.gdc_realn.bam 10179198963 BAM transcriptome harmonized CPTAC3 afebf724-f81c-4462-8ca4-b1c2d642d7f6 605f949bd35dac293f95041d5acabbbe { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04449.RNA-Seq.chimeric.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 b99b5457-9f9d-4df6-bf68-a8deb63d410f.rna_seq.chimeric.gdc_realn.bam 253683544 BAM chimeric harmonized CPTAC3 02b37543-b80f-4ee4-b0e5-6a8ef479cdc4 cc12e51f36099409a4894a4fb9732e27 { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04449.RNA-Seq.chimeric.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 c8eee25a-3df9-4549-947a-f1b673a09eb3.rna_seq.chimeric.gdc_realn.bam 449454651 BAM chimeric harmonized CPTAC3 72a36d7b-acde-41be-a263-112ad2d3e1a1 435c565e91b7129f023697957f427a56 { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04449.RNA-Seq.genomic.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 b99b5457-9f9d-4df6-bf68-a8deb63d410f.rna_seq.genomic.gdc_realn.bam 9550268902 BAM genomic harmonized CPTAC3 f1239973-435f-4634-9eba-50263a4c321c 0ca69dbf4a5a4aa7a5a5f9bdd0d8005a { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04449.RNA-Seq.genomic.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 c8eee25a-3df9-4549-947a-f1b673a09eb3.rna_seq.genomic.gdc_realn.bam 7704178222 BAM genomic harmonized CPTAC3 6f58e790-fdf0-4020-b1f3-375748636382 076795197cb623eaa3a37e29e20c2b47 { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04449.RNA-Seq.R1_L003.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R1_001.fastq.gz 4691535789 FASTQ R1_L003 unaligned CPTAC3 a9eddd7c-e293-40f3-9bdc-ffe657565d83 5baa4bf04d9b48579ff426c04b58273b { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-04449.RNA-Seq.R1_L006.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R1_001.fastq.gz 3838291981 FASTQ R1_L006 unaligned CPTAC3 c10721f5-e95f-40de-8b5d-908d955cead2 4fb04572c6568299728933bdf9eea9fd { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-04449.RNA-Seq.R2_L003.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R2_001.fastq.gz 4910314542 FASTQ R2_L003 unaligned CPTAC3 b04a1909-634a-4fce-8ed4-9224e26ccbda f4da99cbea5205f9f854f342319c4487 { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-04449.RNA-Seq.R2_L006.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R2_001.fastq.gz 4245083460 FASTQ R2_L006 unaligned CPTAC3 1c1d820c-2e0a-449d-8d17-d6c10f2f732b 41be9a98fed6d4fdb7f44a3fed019329 { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-04449.RNA-Seq.transcriptome.A.hg38 C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 b99b5457-9f9d-4df6-bf68-a8deb63d410f.rna_seq.transcriptome.gdc_realn.bam 12770362025 BAM transcriptome harmonized CPTAC3 d4f58cf8-9a5c-44d0-8665-e62b05eedf25 50ca9c31815fae8b55c362d9814612d6 { 'aliquot_tag': 'ALQ_a9035b1e', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04449.RNA-Seq.transcriptome.T.hg38 C3N-04449 LSCC RNA-Seq tumor CPT0332720010 c8eee25a-3df9-4549-947a-f1b673a09eb3.rna_seq.transcriptome.gdc_realn.bam 11444686392 BAM transcriptome harmonized CPTAC3 6e2cd636-3fce-4001-aedc-a59a3a016d29 28848f89d0a5fa4270111bfca9d81ed5 { 'aliquot_tag': 'ALQ_4684275b', 'gdc_sample_type': 'Primary Tumor' } C3N-04449.WGS.N C3N-04449 LSCC WGS blood_normal CPT0332810002 CPT0332810002.WholeGenome.RP-2158.bam 30070111755 BAM aligned CPTAC3 ce8a6ac8-7c3f-454e-848e-326805f4d3ee ecdba8c3304b730fea4e2c8f4f5a659c { 'aliquot_tag': 'ALQ_767bf33', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04449.WGS.N.hg38 C3N-04449 LSCC WGS blood_normal CPT0332810002 bd038019-338b-4341-b111-d76b682045c5_wgs_gdc_realn.bam 94230223745 BAM harmonized CPTAC3 c5d44044-34bb-4ca1-beb1-299a24a41cff c46ae39b85002ca20d890044c8b99f88 { 'aliquot_tag': 'ALQ_767bf33', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04449.WGS.T C3N-04449 LSCC WGS tumor CPT0332720007 CPT0332720007.WholeGenome.RP-2158.bam 25102344713 BAM aligned CPTAC3 f8ac2ef3-76ea-4c5b-9a94-6cb3fed3911d ade87a169eb9b5d4b732d42a70ff284e { 'aliquot_tag': 'ALQ_c1fb83b9', 'gdc_sample_type': 'Primary Tumor' } @@ -37867,16 +40266,16 @@ C3N-04457.miRNA-Seq.A C3N-04457 LSCC miRNA-Seq tissue_normal CPT0260800009 20051 C3N-04457.miRNA-Seq.A.hg38 C3N-04457 LSCC miRNA-Seq tissue_normal CPT0260800009 d2a4bcf5-ead1-4fa4-aae1-e0aa0aa35535_mirnaseq_gdc_realn.bam 287817777 BAM harmonized CPTAC3 bcf61519-0bed-4b7c-b409-7067bd5533ea b192ea56d05a9c8b493caba28ebc90dd { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04457.miRNA-Seq.T C3N-04457 LSCC miRNA-Seq tumor CPT0259530009 200224_UNC31-K00269_0267_AHC722BBXY_CTTGTA_S12_L006_R1_001.unaln.bam 215997748 BAM unaligned CPTAC3 7b219143-5964-40ed-9049-d656a163dc6e dbbdba059fd3a6d3406289b12e5c718e { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor' } C3N-04457.miRNA-Seq.T.hg38 C3N-04457 LSCC miRNA-Seq tumor CPT0259530009 c639be6a-5009-4d92-b78f-2e57b12894c7_mirnaseq_gdc_realn.bam 251350569 BAM harmonized CPTAC3 ad4b750d-512f-4edc-ab4e-2a0c318ea16e 34e712d7d527eb1e361ddefb2c957718 { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04457.RNA-Seq.chimeric.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 5a01ccb5-d3b5-4cfa-a65a-257f4b2c79c9.rna_seq.chimeric.gdc_realn.bam 98711064 BAM chimeric harmonized CPTAC3 c7fb4163-a906-45eb-9a38-24f71361d0d0 7eaaf5073ad68565d9be16e5d3a110bf { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04457.RNA-Seq.chimeric.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 eb711f2f-cf83-4b3d-b13e-8d9b4de5a11e.rna_seq.chimeric.gdc_realn.bam 73110403 BAM chimeric harmonized CPTAC3 a65dde12-c96c-4264-9e8d-a5f5398383d8 4009e190c11c3a9834c1eff9e29e72ed { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04457.RNA-Seq.genomic.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 5a01ccb5-d3b5-4cfa-a65a-257f4b2c79c9.rna_seq.genomic.gdc_realn.bam 6890071059 BAM genomic harmonized CPTAC3 01dc9489-cc72-4259-b3cd-e62199dd1b1c c51a69dcfc30bbad5ec9a20dbc590223 { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04457.RNA-Seq.genomic.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 eb711f2f-cf83-4b3d-b13e-8d9b4de5a11e.rna_seq.genomic.gdc_realn.bam 7888079033 BAM genomic harmonized CPTAC3 3c217b1c-2024-404b-99d5-8edbeeca0bde a268445e76a3e2ab3693963c3bb4c51a { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04457.RNA-Seq.R1_L003.A C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 200505_UNC31-K00269_0277_AHGFKNBBXY_AGCTCGCT-GCAGAATC_S9_L003_R1_001.fastq.gz 3326306536 FASTQ R1_L003 unaligned CPTAC3 df26ed72-b1f1-4914-9c11-eb8480bf930e 57cdb3668f9a5301f02b6aff8289da54 { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04457.RNA-Seq.R1_L007.T C3N-04457 LSCC RNA-Seq tumor CPT0259530009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCTCGCT-GCAGAATC_S28_L007_R1_001.fastq.gz 3961330401 FASTQ R1_L007 unaligned CPTAC3 898b5235-d088-45e4-8efe-ba6402926ccd b3569ec2f3ca6144b08de16ccfc0057b { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04457.RNA-Seq.R2_L003.A C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 200505_UNC31-K00269_0277_AHGFKNBBXY_AGCTCGCT-GCAGAATC_S9_L003_R2_001.fastq.gz 3699273678 FASTQ R2_L003 unaligned CPTAC3 563583e0-0013-45cd-b118-b3647d97e36c 932f4be16365aec5b7b84a9e3b860dbb { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04457.RNA-Seq.R2_L007.T C3N-04457 LSCC RNA-Seq tumor CPT0259530009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCTCGCT-GCAGAATC_S28_L007_R2_001.fastq.gz 4195125717 FASTQ R2_L007 unaligned CPTAC3 57a6f36d-d47f-489a-a05e-1067ecc7d2c3 c3b506a288be10f4ac582eff779e7942 { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04457.RNA-Seq.transcriptome.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 5a01ccb5-d3b5-4cfa-a65a-257f4b2c79c9.rna_seq.transcriptome.gdc_realn.bam 7192544555 BAM transcriptome harmonized CPTAC3 f0371d8e-cbe4-4a2a-90c8-b3180b81d42d fb29a294a6e5113af3dc4431d8b91697 { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04457.RNA-Seq.transcriptome.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 eb711f2f-cf83-4b3d-b13e-8d9b4de5a11e.rna_seq.transcriptome.gdc_realn.bam 10100454710 BAM transcriptome harmonized CPTAC3 8725e04d-fe8b-46d4-b333-9d3a3311da0e 5341dc3711de8720246e2bc7987adfad { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04457.RNA-Seq.chimeric.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 33b2b386-c6e1-4701-accf-23ab3e76a316.rna_seq.chimeric.gdc_realn.bam 98688423 BAM chimeric harmonized CPTAC3 ae829ef1-0e16-417e-8439-12bfc4123541 9d977a9610e8ada55d45f0d8562660af { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04457.RNA-Seq.chimeric.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 22b30d8c-fe5f-497b-bfb4-ef59fca7dc02.rna_seq.chimeric.gdc_realn.bam 73088075 BAM chimeric harmonized CPTAC3 744890ea-d5a1-4da6-b597-8e06182ea7f2 ee5e82c1278ccb5b691bf9584cf459fe { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04457.RNA-Seq.genomic.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 33b2b386-c6e1-4701-accf-23ab3e76a316.rna_seq.genomic.gdc_realn.bam 6890794108 BAM genomic harmonized CPTAC3 5e3ced65-f207-4639-bbee-40d84638a17a 10dc4b8a0e75120f4858e2db9001ec92 { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04457.RNA-Seq.genomic.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 22b30d8c-fe5f-497b-bfb4-ef59fca7dc02.rna_seq.genomic.gdc_realn.bam 7889453832 BAM genomic harmonized CPTAC3 19b5ff75-4865-42e5-912a-6401c1112817 cdd77adc40b241cc9d74debb54b0f0e8 { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04457.RNA-Seq.R1_L003.A C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 200505_UNC31-K00269_0277_AHGFKNBBXY_AGCTCGCT-GCAGAATC_S9_L003_R1_001.fastq.gz 3326306536 FASTQ R1_L003 unaligned CPTAC3 df26ed72-b1f1-4914-9c11-eb8480bf930e 57cdb3668f9a5301f02b6aff8289da54 { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +C3N-04457.RNA-Seq.R1_L007.T C3N-04457 LSCC RNA-Seq tumor CPT0259530009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCTCGCT-GCAGAATC_S28_L007_R1_001.fastq.gz 3961330401 FASTQ R1_L007 unaligned CPTAC3 898b5235-d088-45e4-8efe-ba6402926ccd b3569ec2f3ca6144b08de16ccfc0057b { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-04457.RNA-Seq.R2_L003.A C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 200505_UNC31-K00269_0277_AHGFKNBBXY_AGCTCGCT-GCAGAATC_S9_L003_R2_001.fastq.gz 3699273678 FASTQ R2_L003 unaligned CPTAC3 563583e0-0013-45cd-b118-b3647d97e36c 932f4be16365aec5b7b84a9e3b860dbb { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +C3N-04457.RNA-Seq.R2_L007.T C3N-04457 LSCC RNA-Seq tumor CPT0259530009 200428_UNC32-K00270_0243_AHG3Y3BBXY_AGCTCGCT-GCAGAATC_S28_L007_R2_001.fastq.gz 4195125717 FASTQ R2_L007 unaligned CPTAC3 57a6f36d-d47f-489a-a05e-1067ecc7d2c3 c3b506a288be10f4ac582eff779e7942 { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-04457.RNA-Seq.transcriptome.A.hg38 C3N-04457 LSCC RNA-Seq tissue_normal CPT0260800009 33b2b386-c6e1-4701-accf-23ab3e76a316.rna_seq.transcriptome.gdc_realn.bam 8200530140 BAM transcriptome harmonized CPTAC3 e2710b9c-4889-48fd-a08d-c54c7d4dfc14 15dcedecd0b826099c51764dbc26cd74 { 'aliquot_tag': 'ALQ_65d14405', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04457.RNA-Seq.transcriptome.T.hg38 C3N-04457 LSCC RNA-Seq tumor CPT0259530009 22b30d8c-fe5f-497b-bfb4-ef59fca7dc02.rna_seq.transcriptome.gdc_realn.bam 11495069316 BAM transcriptome harmonized CPTAC3 039bd586-d07f-4587-ba46-147da4059117 6f3dc02aa1df4aff3dfa8d5e1acd564c { 'aliquot_tag': 'ALQ_85f86f3b', 'gdc_sample_type': 'Primary Tumor' } C3N-04457.WGS.N C3N-04457 LSCC WGS blood_normal CPT0260890002 CPT0260890002.WholeGenome.RP-2158.bam 22722416510 BAM aligned CPTAC3 d476de98-3d45-4779-b4dc-106df9fc41d2 89135bf228e5d3a0f8210ab41c8674cd { 'aliquot_tag': 'ALQ_ff13fffc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04457.WGS.N.hg38 C3N-04457 LSCC WGS blood_normal CPT0260890002 0f0cf4d8-bb22-4f10-a486-5277dc30f309_wgs_gdc_realn.bam 67836384995 BAM harmonized CPTAC3 0fbcbb37-b611-468e-bd5a-ffa8a2c24894 ae1f46c1a4978752655934dab3088db3 { 'aliquot_tag': 'ALQ_ff13fffc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04457.WGS.T C3N-04457 LSCC WGS tumor CPT0259530006 CPT0259530006.WholeGenome.RP-2158.bam 26804357960 BAM aligned CPTAC3 bc9cbbde-681f-4653-9ee8-535cae46babc a81b63d713cd2f7253b5a1ca1a415dcb { 'aliquot_tag': 'ALQ_154772aa', 'gdc_sample_type': 'Primary Tumor' } @@ -37895,16 +40294,16 @@ C3N-04609.miRNA-Seq.A C3N-04609 LSCC miRNA-Seq tissue_normal CPT0261370008 20051 C3N-04609.miRNA-Seq.A.hg38 C3N-04609 LSCC miRNA-Seq tissue_normal CPT0261370008 235a0352-a0b2-456e-95f2-7390ddb349d4_mirnaseq_gdc_realn.bam 247973059 BAM harmonized CPTAC3 9fee42d0-3240-4c38-af8b-c8b1c26f5eca 005ad79879245b35c2edd676cb98bf99 { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04609.miRNA-Seq.T C3N-04609 LSCC miRNA-Seq tumor CPT0261340013 200513_UNC31-K00269_0278_BHH7Y7BBXY_GTGGCC_S20_L007_R1_001.unaln.bam 248674397 BAM unaligned CPTAC3 71eec4ad-17eb-4c09-8273-6a55a9e597da 3cc8a3ce2bc51ac887b3ee6afbca93b4 { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor' } C3N-04609.miRNA-Seq.T.hg38 C3N-04609 LSCC miRNA-Seq tumor CPT0261340013 06cea557-a625-4731-8a18-b619aa9934ee_mirnaseq_gdc_realn.bam 284213287 BAM harmonized CPTAC3 3bc28b79-e066-4b4c-9a90-640e29cfba46 81fef8f04593a5310e1931ab7277a10f { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-04609.RNA-Seq.chimeric.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 11e9e1a5-ab63-4552-a1aa-eeff73296b38.rna_seq.chimeric.gdc_realn.bam 100274916 BAM chimeric harmonized CPTAC3 6bb1d520-3769-4d9a-8525-059a6726196b 7ebe8c6f665145287e7948ac8e7b9adc { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04609.RNA-Seq.chimeric.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 ff2eda5b-6421-4fdc-811d-19e750348f24.rna_seq.chimeric.gdc_realn.bam 145368552 BAM chimeric harmonized CPTAC3 4a905bc2-d93e-43b8-b9c5-7f718dcd73cc 0c5258a525704c5d8c0cb20ebe2ebd01 { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-04609.RNA-Seq.genomic.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 11e9e1a5-ab63-4552-a1aa-eeff73296b38.rna_seq.genomic.gdc_realn.bam 7695038407 BAM genomic harmonized CPTAC3 85ca987e-473a-43d8-87a6-069cfd892d03 9933b9c2bb0a8215124a28b36ff8ae4b { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04609.RNA-Seq.genomic.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 ff2eda5b-6421-4fdc-811d-19e750348f24.rna_seq.genomic.gdc_realn.bam 7332022765 BAM genomic harmonized CPTAC3 67240d31-82a7-433d-9599-051ef46f6e25 2a00b371d652183f7557c2810afd7d8f { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-04609.RNA-Seq.R1_L004.A C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 200505_UNC31-K00269_0277_AHGFKNBBXY_CGGAACTG-CACTACGA_S14_L004_R1_001.fastq.gz 3732982453 FASTQ R1_L004 unaligned CPTAC3 ce4b672d-2986-4efd-8b6d-86426216b967 6bf08b364fc611a2bdb675b0c05fa2d0 { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04609.RNA-Seq.R1_L005.T C3N-04609 LSCC RNA-Seq tumor CPT0261340013 200505_UNC31-K00269_0277_AHGFKNBBXY_CCTTCACC-GACGCTCC_S18_L005_R1_001.fastq.gz 3478636597 FASTQ R1_L005 unaligned CPTAC3 b52cfbeb-ce98-48a7-846c-1a2ff673ab54 6b0162b209f91ac0d79cb9186062a5b3 { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-04609.RNA-Seq.R2_L004.A C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 200505_UNC31-K00269_0277_AHGFKNBBXY_CGGAACTG-CACTACGA_S14_L004_R2_001.fastq.gz 4210861214 FASTQ R2_L004 unaligned CPTAC3 f5303b74-aadb-4250-b358-5c3d17ff55d6 3d9237e82a479d1b8d3e0dd53fd5f861 { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04609.RNA-Seq.R2_L005.T C3N-04609 LSCC RNA-Seq tumor CPT0261340013 200505_UNC31-K00269_0277_AHGFKNBBXY_CCTTCACC-GACGCTCC_S18_L005_R2_001.fastq.gz 3987460969 FASTQ R2_L005 unaligned CPTAC3 7f1a4de6-bc03-4692-a9f8-34013cafe9c4 6ba9759f70b3e4c02b4e329e6fadef84 { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor' } -C3N-04609.RNA-Seq.transcriptome.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 11e9e1a5-ab63-4552-a1aa-eeff73296b38.rna_seq.transcriptome.gdc_realn.bam 8561872255 BAM transcriptome harmonized CPTAC3 84d4dc98-7f15-41dc-96ca-f1923cc14eeb 3691b3af378c19f6f1b75bd10cbe3a48 { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04609.RNA-Seq.transcriptome.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 ff2eda5b-6421-4fdc-811d-19e750348f24.rna_seq.transcriptome.gdc_realn.bam 9281085892 BAM transcriptome harmonized CPTAC3 e346e0ad-c876-45d4-bb03-277ef4a7750e 41ebaa9385488c69e3a8d51f1b056903 { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor' } +C3N-04609.RNA-Seq.chimeric.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 a26f3856-d0b0-4e73-914f-6fc5778f82d1.rna_seq.chimeric.gdc_realn.bam 100244173 BAM chimeric harmonized CPTAC3 e9095320-324f-4cd1-a631-4f2bd4cde944 4250e82f8114b1954ad6d3b95825a31b { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04609.RNA-Seq.chimeric.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 c4bc19f2-38a5-4715-8a22-f7d6cd927f29.rna_seq.chimeric.gdc_realn.bam 145338376 BAM chimeric harmonized CPTAC3 b35ab5bf-8c69-48a8-91f9-b42b3215d62c e60846dca205293aa09a355bc9596c92 { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor' } +C3N-04609.RNA-Seq.genomic.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 a26f3856-d0b0-4e73-914f-6fc5778f82d1.rna_seq.genomic.gdc_realn.bam 7696537226 BAM genomic harmonized CPTAC3 57df5867-4a6f-47eb-9217-bb442795c9c4 cc2fe293ecac3dbb12f0ca8d4ef4ccc4 { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04609.RNA-Seq.genomic.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 c4bc19f2-38a5-4715-8a22-f7d6cd927f29.rna_seq.genomic.gdc_realn.bam 7333750961 BAM genomic harmonized CPTAC3 7d990998-e227-40e3-99d6-0a29d26423da 16c7465a1bb794f21e441926e33ac030 { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor' } +C3N-04609.RNA-Seq.R1_L004.A C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 200505_UNC31-K00269_0277_AHGFKNBBXY_CGGAACTG-CACTACGA_S14_L004_R1_001.fastq.gz 3732982453 FASTQ R1_L004 unaligned CPTAC3 ce4b672d-2986-4efd-8b6d-86426216b967 6bf08b364fc611a2bdb675b0c05fa2d0 { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-04609.RNA-Seq.R1_L005.T C3N-04609 LSCC RNA-Seq tumor CPT0261340013 200505_UNC31-K00269_0277_AHGFKNBBXY_CCTTCACC-GACGCTCC_S18_L005_R1_001.fastq.gz 3478636597 FASTQ R1_L005 unaligned CPTAC3 b52cfbeb-ce98-48a7-846c-1a2ff673ab54 6b0162b209f91ac0d79cb9186062a5b3 { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-04609.RNA-Seq.R2_L004.A C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 200505_UNC31-K00269_0277_AHGFKNBBXY_CGGAACTG-CACTACGA_S14_L004_R2_001.fastq.gz 4210861214 FASTQ R2_L004 unaligned CPTAC3 f5303b74-aadb-4250-b358-5c3d17ff55d6 3d9237e82a479d1b8d3e0dd53fd5f861 { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-04609.RNA-Seq.R2_L005.T C3N-04609 LSCC RNA-Seq tumor CPT0261340013 200505_UNC31-K00269_0277_AHGFKNBBXY_CCTTCACC-GACGCTCC_S18_L005_R2_001.fastq.gz 3987460969 FASTQ R2_L005 unaligned CPTAC3 7f1a4de6-bc03-4692-a9f8-34013cafe9c4 6ba9759f70b3e4c02b4e329e6fadef84 { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-04609.RNA-Seq.transcriptome.A.hg38 C3N-04609 LSCC RNA-Seq tissue_normal CPT0261370008 a26f3856-d0b0-4e73-914f-6fc5778f82d1.rna_seq.transcriptome.gdc_realn.bam 9850449084 BAM transcriptome harmonized CPTAC3 873a48a5-b8bb-47e5-abd7-c619e3322eec 93700f8248e0ed11a90bb6d666f1f17a { 'aliquot_tag': 'ALQ_6c4653f4', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04609.RNA-Seq.transcriptome.T.hg38 C3N-04609 LSCC RNA-Seq tumor CPT0261340013 c4bc19f2-38a5-4715-8a22-f7d6cd927f29.rna_seq.transcriptome.gdc_realn.bam 10487858821 BAM transcriptome harmonized CPTAC3 d62e666d-d736-4e51-9b60-8327272333a6 63e097771729b64ce6482d0f8644f334 { 'aliquot_tag': 'ALQ_a52fc1ed', 'gdc_sample_type': 'Primary Tumor' } C3N-04609.WGS.N C3N-04609 LSCC WGS blood_normal CPT0261460002 CPT0261460002.WholeGenome.RP-2158.bam 20516376113 BAM aligned CPTAC3 99a29d84-e542-46e3-9b4c-7fad31274873 b8688214ae6c19834cb8cc2644105e15 { 'aliquot_tag': 'ALQ_acf6a3e2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04609.WGS.N.hg38 C3N-04609 LSCC WGS blood_normal CPT0261460002 d2aedfb1-8888-46fa-b2a6-ed9137cf7761_wgs_gdc_realn.bam 61426023203 BAM harmonized CPTAC3 ec37fbbc-6add-431e-813d-367d21742608 e1e5dd18467951818360e477849d5b6e { 'aliquot_tag': 'ALQ_acf6a3e2', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04609.WGS.T C3N-04609 LSCC WGS tumor CPT0261340006 CPT0261340006.WholeGenome.RP-2158.bam 26715338323 BAM aligned CPTAC3 1a065183-b1a7-4217-9868-8d9609052dcc c9f774ef88c4570b1a8b2f9f986fbfdc { 'aliquot_tag': 'ALQ_cc5e0423', 'gdc_sample_type': 'Primary Tumor' } @@ -37925,18 +40324,24 @@ C3N-04611.miRNA-Seq.T C3N-04611 HNSCC miRNA-Seq tumor CPT0261520009 190228_UNC32 C3N-04611.miRNA-Seq.T.hg38 C3N-04611 HNSCC miRNA-Seq tumor CPT0261520009 6c5b146f-e3bf-426e-9dac-3a9417aea65c_mirnaseq_gdc_realn.bam 276042224 BAM harmonized CPTAC3 4b6da654-a4ff-4966-aad4-3d6ed09bc85e 6af838857a4605525ac0267ba21075b0 { 'aliquot_tag': 'ALQ_5f80f0f', 'gdc_sample_type': 'Primary Tumor' } C3N-04611.RNA-Seq.chimeric.A.hg38 C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 2f89f181-27f0-44db-81eb-cd3d43fb4565.rna_seq.chimeric.gdc_realn.bam 26289525 BAM chimeric harmonized CPTAC3 36778899-38ab-407e-b946-5031f9015e6d 5e27e119d1c9f626a76ddddf75459d78 { 'aliquot_tag': 'ALQ_b7d8d31f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04611.RNA-Seq.chimeric.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 b5bf29b3-e474-45ba-adfc-c20b79dcee41.rna_seq.chimeric.gdc_realn.bam 32126651 BAM chimeric harmonized CPTAC3 a41eb75a-7143-4a7b-afca-f4206bcec6c2 8ecbfdba3043818b824c16916b43486e { 'aliquot_tag': 'ALQ_5f80f0f', 'gdc_sample_type': 'Primary Tumor' } -C3N-04611.RNA-Seq.genomic.A.hg38 C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 2f89f181-27f0-44db-81eb-cd3d43fb4565.rna_seq.genomic.gdc_realn.bam 7216776524 BAM genomic harmonized CPTAC3 51a8f332-bb60-4fc5-9819-9a3f6720c23e e360d63a2c1d82e746805e7b7fb30f27 { 'aliquot_tag': 'ALQ_b7d8d31f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04611.RNA-Seq.genomic.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 b5bf29b3-e474-45ba-adfc-c20b79dcee41.rna_seq.genomic.gdc_realn.bam 8449222301 BAM genomic harmonized CPTAC3 4dd4e54b-44b0-49cc-af3b-3c7d9be79a5e 03bd0208df4944162e4418d426759447 { 'aliquot_tag': 'ALQ_5f80f0f', 'gdc_sample_type': 'Primary Tumor' } -C3N-04611.RNA-Seq.R1_L005.T C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATATGGAT-CTGTATTA_S19_L005_R1_001.fastq.gz 3953220535 FASTQ R1_L005 unaligned CPTAC3 f2c5478b-00ef-43ec-918c-5900238c2537 2a1fb30b226db4b83f463047ee90dc2e { 'aliquot_tag': 'ALQ_5f80f0f', 'gdc_sample_type': 'Primary Tumor' } -C3N-04611.RNA-Seq.R1_L008.A C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 190522_UNC31-K00269_0217_AH7F5MBBXY_CGTCTGCG-TTCACAAT_S43_L008_R1_001.fastq.gz 3576223355 FASTQ R1_L008 unaligned CPTAC3 456b4e27-5d07-42a6-b098-81361e72d703 d4b851825866fa52550236e1a2809cd5 { 'aliquot_tag': 'ALQ_b7d8d31f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04611.RNA-Seq.R1_.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 20210723_P2_A1_WB7988-plate2_S1_R1_001.fastq.gz 5609407969 FASTQ R1_ unaligned CPTAC3 bf0a1f26-a232-4ec6-9ac7-199bdf589b02 90fabcd9748accafae93b1c3fc25c51d { 'aliquot_tag': 'ALQ_e7b810bc', 'gdc_sample_type': 'Primary Tumor' } -C3N-04611.RNA-Seq.R1_.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 20210729_P3_H11_WB7988-Plate3_S95_R1_001.fastq.gz 4996674187 FASTQ R1_ unaligned CPTAC3 3fdce399-670d-4a00-bb99-8c56f913fbb3 82109447645354f2561255e66bb2f953 { 'aliquot_tag': 'ALQ_9b67190', 'gdc_sample_type': 'Primary Tumor' } -C3N-04611.RNA-Seq.R2_L005.T C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATATGGAT-CTGTATTA_S19_L005_R2_001.fastq.gz 4420408338 FASTQ R2_L005 unaligned CPTAC3 85606e14-df05-44d8-8a65-c208cfb10b9a 8495c3024955313141a6e2701855ecc5 { 'aliquot_tag': 'ALQ_5f80f0f', 'gdc_sample_type': 'Primary Tumor' } -C3N-04611.RNA-Seq.R2_L008.A C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 190522_UNC31-K00269_0217_AH7F5MBBXY_CGTCTGCG-TTCACAAT_S43_L008_R2_001.fastq.gz 3868045676 FASTQ R2_L008 unaligned CPTAC3 76f05057-3a1b-4919-af2b-b334855a4e4e b515a61038ab8b5369386a0f3d06452d { 'aliquot_tag': 'ALQ_b7d8d31f', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04611.RNA-Seq.R2_.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 20210723_P2_A1_WB7988-plate2_S1_R2_001.fastq.gz 5811772273 FASTQ R2_ unaligned CPTAC3 ddd5fbf3-0e37-413c-863f-04bc8c661076 aca0a0a60cd9eb75aa705be4f352de5f { 'aliquot_tag': 'ALQ_e7b810bc', 'gdc_sample_type': 'Primary Tumor' } -C3N-04611.RNA-Seq.R2_.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 20210729_P3_H11_WB7988-Plate3_S95_R2_001.fastq.gz 5114594767 FASTQ R2_ unaligned CPTAC3 d64294f5-f9cd-4f2a-a46b-a158f31b0303 592372952fff018fd661afbac3d08cad { 'aliquot_tag': 'ALQ_9b67190', 'gdc_sample_type': 'Primary Tumor' } +C3N-04611.RNA-Seq.chimeric.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 ee856111-d8b1-41f3-9193-47ebfef9ef29.rna_seq.chimeric.gdc_realn.bam 181488207 BAM chimeric harmonized CPTAC3 97e13161-f66f-4e21-8bb2-41eeacd4838d 7bde389272e903c6a7bce25366a65265 { 'aliquot_tag': 'ALQ_e7b810bc', 'gdc_sample_type': 'Primary Tumor' } +C3N-04611.RNA-Seq.chimeric.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 19cc24e1-37a8-4be2-bc29-808179691693.rna_seq.chimeric.gdc_realn.bam 145200515 BAM chimeric harmonized CPTAC3 5cae3303-9e2a-48df-b757-b99136ff8e30 a00e7adaa7f280bd71f0f5fc3dd6f8ef { 'aliquot_tag': 'ALQ_9b67190', 'gdc_sample_type': 'Primary Tumor' } +C3N-04611.RNA-Seq.genomic.A.hg38 C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 2f89f181-27f0-44db-81eb-cd3d43fb4565.rna_seq.genomic.gdc_realn.bam 7216776524 BAM genomic harmonized CPTAC3 9b370ce7-5c17-4274-8636-4a2cf2007ab4 e360d63a2c1d82e746805e7b7fb30f27 { 'aliquot_tag': 'ALQ_b7d8d31f', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04611.RNA-Seq.genomic.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 b5bf29b3-e474-45ba-adfc-c20b79dcee41.rna_seq.genomic.gdc_realn.bam 8449222301 BAM genomic harmonized CPTAC3 bc536368-0520-4089-a4cb-ad5f9afd5093 03bd0208df4944162e4418d426759447 { 'aliquot_tag': 'ALQ_5f80f0f', 'gdc_sample_type': 'Primary Tumor' } +C3N-04611.RNA-Seq.genomic.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 ee856111-d8b1-41f3-9193-47ebfef9ef29.rna_seq.genomic.gdc_realn.bam 11351270900 BAM genomic harmonized CPTAC3 330a6b8b-4f3c-4607-a958-4c0fadd2edf5 1e3053ebe04eba10a88f958d71760ab9 { 'aliquot_tag': 'ALQ_e7b810bc', 'gdc_sample_type': 'Primary Tumor' } +C3N-04611.RNA-Seq.genomic.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 19cc24e1-37a8-4be2-bc29-808179691693.rna_seq.genomic.gdc_realn.bam 7551235008 BAM genomic harmonized CPTAC3 680f8b66-54bf-4649-97dd-55ba2dcfb17d 1935865b022e7b3ce3b67e9be64244e3 { 'aliquot_tag': 'ALQ_9b67190', 'gdc_sample_type': 'Primary Tumor' } +C3N-04611.RNA-Seq.R1_L005.T C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATATGGAT-CTGTATTA_S19_L005_R1_001.fastq.gz 3953220535 FASTQ R1_L005 unaligned CPTAC3 f2c5478b-00ef-43ec-918c-5900238c2537 2a1fb30b226db4b83f463047ee90dc2e { 'aliquot_tag': 'ALQ_5f80f0f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-04611.RNA-Seq.R1_L008.A C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 190522_UNC31-K00269_0217_AH7F5MBBXY_CGTCTGCG-TTCACAAT_S43_L008_R1_001.fastq.gz 3576223355 FASTQ R1_L008 unaligned CPTAC3 456b4e27-5d07-42a6-b098-81361e72d703 d4b851825866fa52550236e1a2809cd5 { 'aliquot_tag': 'ALQ_b7d8d31f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-04611.RNA-Seq.R2_L005.T C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 190416_UNC32-K00270_0165_AH5JY2BBXY_ATATGGAT-CTGTATTA_S19_L005_R2_001.fastq.gz 4420408338 FASTQ R2_L005 unaligned CPTAC3 85606e14-df05-44d8-8a65-c208cfb10b9a 8495c3024955313141a6e2701855ecc5 { 'aliquot_tag': 'ALQ_5f80f0f', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-04611.RNA-Seq.R2_L008.A C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 190522_UNC31-K00269_0217_AH7F5MBBXY_CGTCTGCG-TTCACAAT_S43_L008_R2_001.fastq.gz 3868045676 FASTQ R2_L008 unaligned CPTAC3 76f05057-3a1b-4919-af2b-b334855a4e4e b515a61038ab8b5369386a0f3d06452d { 'aliquot_tag': 'ALQ_b7d8d31f', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-04611.RNA-Seq.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 20210723_P2_A1_WB7988-plate2_S1_R1_001.fastq.gz 5609407969 FASTQ unaligned CPTAC3 bf0a1f26-a232-4ec6-9ac7-199bdf589b02 90fabcd9748accafae93b1c3fc25c51d +C3N-04611.RNA-Seq.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 20210723_P2_A1_WB7988-plate2_S1_R2_001.fastq.gz 5811772273 FASTQ unaligned CPTAC3 ddd5fbf3-0e37-413c-863f-04bc8c661076 aca0a0a60cd9eb75aa705be4f352de5f +C3N-04611.RNA-Seq.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 20210729_P3_H11_WB7988-Plate3_S95_R1_001.fastq.gz 4996674187 FASTQ unaligned CPTAC3 3fdce399-670d-4a00-bb99-8c56f913fbb3 82109447645354f2561255e66bb2f953 +C3N-04611.RNA-Seq.T C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 20210729_P3_H11_WB7988-Plate3_S95_R2_001.fastq.gz 5114594767 FASTQ unaligned CPTAC3 d64294f5-f9cd-4f2a-a46b-a158f31b0303 592372952fff018fd661afbac3d08cad C3N-04611.RNA-Seq.transcriptome.A.hg38 C3N-04611 HNSCC RNA-Seq tissue_normal CPT0261550009 2f89f181-27f0-44db-81eb-cd3d43fb4565.rna_seq.transcriptome.gdc_realn.bam 9201801952 BAM transcriptome harmonized CPTAC3 7475b49a-d767-4a4e-b311-d1a1b80b1753 58db904031e1895967aceb80be601118 { 'aliquot_tag': 'ALQ_b7d8d31f', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04611.RNA-Seq.transcriptome.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261520009 b5bf29b3-e474-45ba-adfc-c20b79dcee41.rna_seq.transcriptome.gdc_realn.bam 11321138154 BAM transcriptome harmonized CPTAC3 6b34cdb5-6df2-466b-bd27-415d65c8151d b460efc49de4c37ca3222c615293bddb { 'aliquot_tag': 'ALQ_5f80f0f', 'gdc_sample_type': 'Primary Tumor' } +C3N-04611.RNA-Seq.transcriptome.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560011 ee856111-d8b1-41f3-9193-47ebfef9ef29.rna_seq.transcriptome.gdc_realn.bam 3844250138 BAM transcriptome harmonized CPTAC3 fd71036a-6f45-4cca-a142-1e98dad699e1 2ad418312d3d8d99170763db84d43614 { 'aliquot_tag': 'ALQ_e7b810bc', 'gdc_sample_type': 'Primary Tumor' } +C3N-04611.RNA-Seq.transcriptome.T.hg38 C3N-04611 HNSCC RNA-Seq tumor CPT0261560013 19cc24e1-37a8-4be2-bc29-808179691693.rna_seq.transcriptome.gdc_realn.bam 2992092348 BAM transcriptome harmonized CPTAC3 8fea22ef-765a-4b7b-82a9-1a895933ad49 2655b6e9538368e792ff3a772c1c20b0 { 'aliquot_tag': 'ALQ_9b67190', 'gdc_sample_type': 'Primary Tumor' } C3N-04611.WGS.N C3N-04611 HNSCC WGS blood_normal CPT0261640002 CPT0261640002.WholeGenome.RP-1303.bam 69388797335 BAM aligned CPTAC3 30907803-55ef-4277-982c-4d596fdd57db 1061f1030c64074686cbf23e354a7a81 { 'aliquot_tag': 'ALQ_9bfe5189', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04611.WGS.N.hg38 C3N-04611 HNSCC WGS blood_normal CPT0261640002 dda4c83b-732e-4465-9f7d-f790f7328218_wgs_gdc_realn.bam 100987767759 BAM harmonized CPTAC3 1df12409-b1af-4c1a-9fe8-2a494f27c4ab 8b87d7d14c83be0d5a03676c047f401f { 'aliquot_tag': 'ALQ_9bfe5189', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04611.WGS.T C3N-04611 HNSCC WGS tumor CPT0261520006 CPT0261520006.WholeGenome.RP-1303.bam 81497922288 BAM aligned CPTAC3 292b35dd-9326-4bc4-8bda-387fafb9874f b22a7d3c42fdc05e6f83aee3a74dffe5 { 'aliquot_tag': 'ALQ_9547129e', 'gdc_sample_type': 'Primary Tumor' } @@ -37953,16 +40358,16 @@ C3N-04660.miRNA-Seq.A C3N-04660 LSCC miRNA-Seq tissue_normal CPT0333140006 20120 C3N-04660.miRNA-Seq.A.hg38 C3N-04660 LSCC miRNA-Seq tissue_normal CPT0333140006 715cb626-024c-4085-b91d-5c9a60cbe8e8_mirnaseq_gdc_realn.bam 285786722 BAM harmonized CPTAC3 aa45b1be-5599-408b-8268-187f207d072f 66b7990154361c94da17bbaa2753670c { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04660.miRNA-Seq.T C3N-04660 LSCC miRNA-Seq tumor CPT0333120010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTGGCC_S36_L007_R1_001.unaln.bam 218098122 BAM unaligned CPTAC3 de4eaf61-8ff7-41a2-b6fb-3e3979ab2f01 68d56134bd3c76894af21938c8635115 { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor' } C3N-04660.miRNA-Seq.T.hg38 C3N-04660 LSCC miRNA-Seq tumor CPT0333120010 2f49ffe2-3e11-40e9-882d-7e372b0da4e8_mirnaseq_gdc_realn.bam 241041016 BAM harmonized CPTAC3 203cdb5f-eec9-4844-92f3-3126ebb46989 299c4861277334b1d68e1d73452652b2 { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor' } -C3N-04660.RNA-Seq.chimeric.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 0dd4cba1-de4e-4c31-9563-bced7adbb067.rna_seq.chimeric.gdc_realn.bam 394347740 BAM chimeric harmonized CPTAC3 1765e2a4-fcce-4904-a7b7-6118ea824ee1 80bd625fdadea396db84d3668295b83a { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04660.RNA-Seq.chimeric.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 c7eb7e1b-a086-49d9-9299-ed720b572417.rna_seq.chimeric.gdc_realn.bam 416708427 BAM chimeric harmonized CPTAC3 78e580af-a9bb-4b85-b517-fc0da9ea706a 9af8dae1e4787e05222ff9d9f0e17cb3 { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor' } -C3N-04660.RNA-Seq.genomic.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 0dd4cba1-de4e-4c31-9563-bced7adbb067.rna_seq.genomic.gdc_realn.bam 7709239435 BAM genomic harmonized CPTAC3 d5e365c8-e71a-4545-aa2a-6042fee8b358 8f00e0051e5d400537d5bae5120ece63 { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04660.RNA-Seq.genomic.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 c7eb7e1b-a086-49d9-9299-ed720b572417.rna_seq.genomic.gdc_realn.bam 7116938071 BAM genomic harmonized CPTAC3 1a45da6a-f975-486d-8193-24de519d59ee 7b44d4f88563ae3efd3fcd4795215303 { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor' } -C3N-04660.RNA-Seq.R1_L002.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R1_001.fastq.gz 3909228727 FASTQ R1_L002 unaligned CPTAC3 f2c7e58e-88ab-4532-a94c-c6df1b052c8e 3b209090e61165ca225e4d898ded19d6 { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04660.RNA-Seq.R1_L006.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R1_001.fastq.gz 3491128050 FASTQ R1_L006 unaligned CPTAC3 f040cd6f-bca4-4219-90ce-79bb548ff258 95c536a656e0f8bc39014ff12a0ab182 { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor' } -C3N-04660.RNA-Seq.R2_L002.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R2_001.fastq.gz 4232579809 FASTQ R2_L002 unaligned CPTAC3 d1ebe51b-7462-45de-af90-e037d6289775 df00fdd9d9a6ca33f8f1dfd90aa9aac9 { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04660.RNA-Seq.R2_L006.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R2_001.fastq.gz 3876810533 FASTQ R2_L006 unaligned CPTAC3 1ffd9fe7-3bef-45ce-a22d-76d05d3429a6 d29a67badd82392e680792d342f91748 { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor' } -C3N-04660.RNA-Seq.transcriptome.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 0dd4cba1-de4e-4c31-9563-bced7adbb067.rna_seq.transcriptome.gdc_realn.bam 8219293811 BAM transcriptome harmonized CPTAC3 b43fe8a2-b8a0-4eca-af9b-8f9ce636d99f 221b7ede69b194ea0ba01b99c0ab439e { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04660.RNA-Seq.transcriptome.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 c7eb7e1b-a086-49d9-9299-ed720b572417.rna_seq.transcriptome.gdc_realn.bam 9400241872 BAM transcriptome harmonized CPTAC3 e41f3b4c-bad0-446d-999f-f6fe21b0a0e9 4636d23b928ecd5aa3975e2556f80c4c { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor' } +C3N-04660.RNA-Seq.chimeric.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 7d36b323-5b64-4c58-b0fb-203d816a7730.rna_seq.chimeric.gdc_realn.bam 394372773 BAM chimeric harmonized CPTAC3 47b0d964-1ef5-413a-b91b-88a368b9dbc9 4690de66967f24159bb973738a91e4a2 { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04660.RNA-Seq.chimeric.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 e98f7413-7740-4ba0-b7d7-7c4e6d93cd82.rna_seq.chimeric.gdc_realn.bam 416831460 BAM chimeric harmonized CPTAC3 ccb0ce93-c767-4dda-8d2b-3752f74c68f8 de01392e4d9acc2505dc1dccc44134d8 { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor' } +C3N-04660.RNA-Seq.genomic.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 7d36b323-5b64-4c58-b0fb-203d816a7730.rna_seq.genomic.gdc_realn.bam 7715664213 BAM genomic harmonized CPTAC3 bc778135-4f78-48fc-b43e-0d2c6c32d44b d663a59264230e8fc0efb1656c903f53 { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04660.RNA-Seq.genomic.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 e98f7413-7740-4ba0-b7d7-7c4e6d93cd82.rna_seq.genomic.gdc_realn.bam 7125312238 BAM genomic harmonized CPTAC3 73abdfa9-1285-4e1e-8661-997380d9e430 08477ba222629e89f86c12893ca6a5fc { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor' } +C3N-04660.RNA-Seq.R1_L002.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R1_001.fastq.gz 3909228727 FASTQ R1_L002 unaligned CPTAC3 f2c7e58e-88ab-4532-a94c-c6df1b052c8e 3b209090e61165ca225e4d898ded19d6 { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-04660.RNA-Seq.R1_L006.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R1_001.fastq.gz 3491128050 FASTQ R1_L006 unaligned CPTAC3 f040cd6f-bca4-4219-90ce-79bb548ff258 95c536a656e0f8bc39014ff12a0ab182 { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-04660.RNA-Seq.R2_L002.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R2_001.fastq.gz 4232579809 FASTQ R2_L002 unaligned CPTAC3 d1ebe51b-7462-45de-af90-e037d6289775 df00fdd9d9a6ca33f8f1dfd90aa9aac9 { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-04660.RNA-Seq.R2_L006.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R2_001.fastq.gz 3876810533 FASTQ R2_L006 unaligned CPTAC3 1ffd9fe7-3bef-45ce-a22d-76d05d3429a6 d29a67badd82392e680792d342f91748 { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-04660.RNA-Seq.transcriptome.A.hg38 C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 7d36b323-5b64-4c58-b0fb-203d816a7730.rna_seq.transcriptome.gdc_realn.bam 9344688192 BAM transcriptome harmonized CPTAC3 c514c463-8b19-439b-9f92-7821a1f11269 1e8eb03bff7486584d81ea8d7b41fc2e { 'aliquot_tag': 'ALQ_4992ae26', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04660.RNA-Seq.transcriptome.T.hg38 C3N-04660 LSCC RNA-Seq tumor CPT0333120010 e98f7413-7740-4ba0-b7d7-7c4e6d93cd82.rna_seq.transcriptome.gdc_realn.bam 10508493121 BAM transcriptome harmonized CPTAC3 c25c3fc4-d3b0-4c3f-abdd-f8e47f2ab67f 36a1bfa0168270d2b301586f4e90850d { 'aliquot_tag': 'ALQ_36aacff2', 'gdc_sample_type': 'Primary Tumor' } C3N-04660.WGS.N C3N-04660 LSCC WGS blood_normal CPT0333210002 CPT0333210002.WholeGenome.RP-2158.bam 23692882633 BAM aligned CPTAC3 702de41c-f45c-4111-bad1-03264dd01574 e0dce14acb2ece32b622500e04cfd275 { 'aliquot_tag': 'ALQ_8b97e1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04660.WGS.N.hg38 C3N-04660 LSCC WGS blood_normal CPT0333210002 b5493d9b-8080-415f-bc7d-3a19c9aa7685_wgs_gdc_realn.bam 69250956663 BAM harmonized CPTAC3 719e10b8-ca89-4b4b-af1e-abc64649587d 8516be70df3c0319e535f643f875b085 { 'aliquot_tag': 'ALQ_8b97e1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04660.WGS.T C3N-04660 LSCC WGS tumor CPT0333120007 CPT0333120007.WholeGenome.RP-2158.bam 24834974591 BAM aligned CPTAC3 a8ef9313-a212-407a-a2a4-ef6d38afbda3 fda47cdece3bca876455334e8a35083e { 'aliquot_tag': 'ALQ_b1d56b10', 'gdc_sample_type': 'Primary Tumor' } @@ -37979,16 +40384,16 @@ C3N-04662.miRNA-Seq.A C3N-04662 LSCC miRNA-Seq tissue_normal CPT0333340009 20120 C3N-04662.miRNA-Seq.A.hg38 C3N-04662 LSCC miRNA-Seq tissue_normal CPT0333340009 b44ac144-a0ab-458c-9b23-90e9115cc7be_mirnaseq_gdc_realn.bam 373857070 BAM harmonized CPTAC3 444433b2-76cb-4492-94cd-0f52eb83d84d acb087f1f1c76ad7c8618592071c3409 { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04662.miRNA-Seq.T C3N-04662 LSCC miRNA-Seq tumor CPT0333320010 201209_UNC32-K00270_0265_AHJ55WBBXY_GTTTCG_S37_L007_R1_001.unaln.bam 280025904 BAM unaligned CPTAC3 4ba3830c-642a-46f5-bdac-b0bca79f15f7 72fa1578a807859c05eff650aea233ec { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor' } C3N-04662.miRNA-Seq.T.hg38 C3N-04662 LSCC miRNA-Seq tumor CPT0333320010 30b8806e-7738-4358-95eb-7233e1b43af6_mirnaseq_gdc_realn.bam 306286432 BAM harmonized CPTAC3 4575f552-e653-493b-b327-f568fe3ca552 08f8bfb1c798cb58676cefc2915b53aa { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor' } -C3N-04662.RNA-Seq.chimeric.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 a86b88db-00db-4033-8636-e09f8dd14629.rna_seq.chimeric.gdc_realn.bam 194251372 BAM chimeric harmonized CPTAC3 89ad3910-6025-4dac-8812-daacde39ab8d f16fbd050d497ab3168372dd8280f649 { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04662.RNA-Seq.chimeric.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 9a720904-1ea0-45ea-ac22-92e8a89b9932.rna_seq.chimeric.gdc_realn.bam 375697393 BAM chimeric harmonized CPTAC3 9d6db7ad-5db6-47a1-b78d-60898ce31136 e989560b09542b5883ba6d1fa6690016 { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor' } -C3N-04662.RNA-Seq.genomic.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 a86b88db-00db-4033-8636-e09f8dd14629.rna_seq.genomic.gdc_realn.bam 6365746832 BAM genomic harmonized CPTAC3 185b1986-72d6-4841-b0fc-3f86d6e1aef3 33e1221e474aa9b10a4ee8e2e4f2f3c8 { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04662.RNA-Seq.genomic.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 9a720904-1ea0-45ea-ac22-92e8a89b9932.rna_seq.genomic.gdc_realn.bam 8167623697 BAM genomic harmonized CPTAC3 98793a44-38e6-48fb-a4ba-5d2b713584a6 3ca884e7bc5d661e9d968c5af3b2b1f1 { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor' } -C3N-04662.RNA-Seq.R1_L002.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R1_001.fastq.gz 2954081817 FASTQ R1_L002 unaligned CPTAC3 9d3d2907-4b0b-420d-bbaa-33de825bd2d8 4a84e8d1cdea12f929bcfe60d3354e1c { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04662.RNA-Seq.R1_L005.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R1_001.fastq.gz 4078146955 FASTQ R1_L005 unaligned CPTAC3 b0910594-ba39-4b73-9c92-87889032b3df 9f0a777b86beabfc81b55a2b5b15f100 { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor' } -C3N-04662.RNA-Seq.R2_L002.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R2_001.fastq.gz 3225243949 FASTQ R2_L002 unaligned CPTAC3 cf2fb946-7a89-4be7-bcf1-3dbefd88c208 37822a8be538071c3dc8c4047ae26f6f { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04662.RNA-Seq.R2_L005.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R2_001.fastq.gz 4470105933 FASTQ R2_L005 unaligned CPTAC3 18d596f5-5d39-4ae3-9538-45967468203f 0c32737f44323b86dceffff3efbdbf54 { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor' } -C3N-04662.RNA-Seq.transcriptome.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 a86b88db-00db-4033-8636-e09f8dd14629.rna_seq.transcriptome.gdc_realn.bam 7586054866 BAM transcriptome harmonized CPTAC3 20062646-c1b6-475c-bd2c-b1661c4cf77c 0346a18661fe8c800a9f45ea07b71aed { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04662.RNA-Seq.transcriptome.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 9a720904-1ea0-45ea-ac22-92e8a89b9932.rna_seq.transcriptome.gdc_realn.bam 10163355494 BAM transcriptome harmonized CPTAC3 b4141715-63d4-4633-ac3d-8f216058096b 02634f7cc19be1a863cb8cf010f2cd72 { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor' } +C3N-04662.RNA-Seq.chimeric.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 eb6a84f3-1c9e-4e4e-bd66-3ef0c4a231aa.rna_seq.chimeric.gdc_realn.bam 194255095 BAM chimeric harmonized CPTAC3 81a8b067-3bfc-4443-9689-e2d547e6c8e4 e202f371944d7398c866f971d594f80f { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04662.RNA-Seq.chimeric.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 187d9db9-90ff-41a1-ad3a-2409d663b264.rna_seq.chimeric.gdc_realn.bam 375735046 BAM chimeric harmonized CPTAC3 823d5bed-89b2-478b-a663-c9621bf37f66 7688ce23a4bc3ec1b1d5e86c3265ad31 { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor' } +C3N-04662.RNA-Seq.genomic.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 eb6a84f3-1c9e-4e4e-bd66-3ef0c4a231aa.rna_seq.genomic.gdc_realn.bam 6375840251 BAM genomic harmonized CPTAC3 b24dfc08-1438-4605-9867-2c3ef7d0ef2a 46e0850cf456fbf8835b14e45049d769 { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04662.RNA-Seq.genomic.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 187d9db9-90ff-41a1-ad3a-2409d663b264.rna_seq.genomic.gdc_realn.bam 8177926663 BAM genomic harmonized CPTAC3 cab38c17-a3f9-4412-83aa-7a1fb4fbbf73 7c08c043fca21487e2d70f499f0c24ab { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor' } +C3N-04662.RNA-Seq.R1_L002.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R1_001.fastq.gz 2954081817 FASTQ R1_L002 unaligned CPTAC3 9d3d2907-4b0b-420d-bbaa-33de825bd2d8 4a84e8d1cdea12f929bcfe60d3354e1c { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-04662.RNA-Seq.R1_L005.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R1_001.fastq.gz 4078146955 FASTQ R1_L005 unaligned CPTAC3 b0910594-ba39-4b73-9c92-87889032b3df 9f0a777b86beabfc81b55a2b5b15f100 { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-04662.RNA-Seq.R2_L002.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R2_001.fastq.gz 3225243949 FASTQ R2_L002 unaligned CPTAC3 cf2fb946-7a89-4be7-bcf1-3dbefd88c208 37822a8be538071c3dc8c4047ae26f6f { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-04662.RNA-Seq.R2_L005.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R2_001.fastq.gz 4470105933 FASTQ R2_L005 unaligned CPTAC3 18d596f5-5d39-4ae3-9538-45967468203f 0c32737f44323b86dceffff3efbdbf54 { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-04662.RNA-Seq.transcriptome.A.hg38 C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 eb6a84f3-1c9e-4e4e-bd66-3ef0c4a231aa.rna_seq.transcriptome.gdc_realn.bam 8668220822 BAM transcriptome harmonized CPTAC3 26734ac2-b2b1-46ba-93ab-38af64739fd9 ddcd89488460fcfd49e5d8f8d50da9f2 { 'aliquot_tag': 'ALQ_94e512bc', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04662.RNA-Seq.transcriptome.T.hg38 C3N-04662 LSCC RNA-Seq tumor CPT0333320010 187d9db9-90ff-41a1-ad3a-2409d663b264.rna_seq.transcriptome.gdc_realn.bam 11535902333 BAM transcriptome harmonized CPTAC3 b4ccaffb-1adb-4c9e-9b99-58416030c1e1 a454ce8db2d669b1eb23dd0d9b21d70d { 'aliquot_tag': 'ALQ_7b626ef9', 'gdc_sample_type': 'Primary Tumor' } C3N-04662.WGS.N C3N-04662 LSCC WGS blood_normal CPT0333410002 CPT0333410002.WholeGenome.RP-2158.bam 26911219456 BAM aligned CPTAC3 54e8f619-de40-4efc-95bb-9de7a2f02084 311500a9c6cb2c7bc448d0603c361e47 { 'aliquot_tag': 'ALQ_d6d274fc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04662.WGS.N.hg38 C3N-04662 LSCC WGS blood_normal CPT0333410002 b3f467bd-e6f5-4a05-830e-efff563e1830_wgs_gdc_realn.bam 80842847804 BAM harmonized CPTAC3 f326c8cb-0016-46ed-942e-7cb72363307b e744761fe355515947eee58606fec0fb { 'aliquot_tag': 'ALQ_d6d274fc', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04662.WGS.T C3N-04662 LSCC WGS tumor CPT0333320007 CPT0333320007.WholeGenome.RP-2158.bam 26925350380 BAM aligned CPTAC3 7293efa6-b4c4-4660-a400-79126a9f9892 f3cd1fe56e4224dc173f2d364e5b373f { 'aliquot_tag': 'ALQ_fc1dca1b', 'gdc_sample_type': 'Primary Tumor' } @@ -38007,16 +40412,16 @@ C3N-04665.miRNA-Seq.A C3N-04665 LSCC miRNA-Seq tissue_normal CPT0333540009 20120 C3N-04665.miRNA-Seq.A.hg38 C3N-04665 LSCC miRNA-Seq tissue_normal CPT0333540009 d75e5a5b-2475-4e92-8feb-e7f78b36afb6_mirnaseq_gdc_realn.bam 235057631 BAM harmonized CPTAC3 eb348191-33cf-4e1e-8df0-00e9130ae2f6 a194c6057f05ad604b5702ebbff29cd6 { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04665.miRNA-Seq.T C3N-04665 LSCC miRNA-Seq tumor CPT0333520010 201209_UNC32-K00270_0265_AHJ55WBBXY_CGTACG_S11_L006_R1_001.unaln.bam 304496074 BAM unaligned CPTAC3 1980e0cd-8f60-43b9-9018-4307eefd41c5 ee69005ce83b9c76bbe077059577adb4 { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor' } C3N-04665.miRNA-Seq.T.hg38 C3N-04665 LSCC miRNA-Seq tumor CPT0333520010 45d3b3a8-999f-4aba-8bdc-e6c37b7a3b82_mirnaseq_gdc_realn.bam 330656629 BAM harmonized CPTAC3 c571ff62-a952-4948-a60c-d9ab1ce8f677 342ececac2e5ac981525abe311ad12bc { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04665.RNA-Seq.chimeric.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 208c3c05-e8bc-49e0-8261-1c525c2d8a7e.rna_seq.chimeric.gdc_realn.bam 255939600 BAM chimeric harmonized CPTAC3 b40b6852-96c2-4a05-969b-183f8a99553a 65dbdabe3e23bf53c362e92caa49439e { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04665.RNA-Seq.chimeric.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 3f07253a-86e5-4704-9d43-c4cf4dcb2d33.rna_seq.chimeric.gdc_realn.bam 296962535 BAM chimeric harmonized CPTAC3 51e0e95a-6894-4e70-a472-372761295b39 03731605b359bd25eec666859ed1998b { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04665.RNA-Seq.genomic.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 208c3c05-e8bc-49e0-8261-1c525c2d8a7e.rna_seq.genomic.gdc_realn.bam 7658898534 BAM genomic harmonized CPTAC3 7972fa5a-5222-4125-b762-ba2ca884780e 0af498865ce8eac3b3cff00d99ea148f { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04665.RNA-Seq.genomic.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 3f07253a-86e5-4704-9d43-c4cf4dcb2d33.rna_seq.genomic.gdc_realn.bam 6600247607 BAM genomic harmonized CPTAC3 c41d1405-93d2-404c-8993-7d844e2961a8 98b1e12a89ae64d730d1b1140fb1d932 { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04665.RNA-Seq.R1_L001.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 3282015159 FASTQ R1_L001 unaligned CPTAC3 81481aff-e1d8-45ab-8755-17a61ff5915c 1cf9728e014a5efe458e0094a9e0325f { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04665.RNA-Seq.R1_L002.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R1_001.fastq.gz 3747629000 FASTQ R1_L002 unaligned CPTAC3 1db3ad6b-515d-4fc3-ab1b-ae3fabdcc438 dc197baca7f1b32f20d197ce286022f1 { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04665.RNA-Seq.R2_L001.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3724470408 FASTQ R2_L001 unaligned CPTAC3 a2b99b44-8278-422c-addc-0cbab637d56d 28a78fa66492a53a138f310ef7a03685 { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04665.RNA-Seq.R2_L002.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R2_001.fastq.gz 4142893674 FASTQ R2_L002 unaligned CPTAC3 f2a6a325-7b60-442e-8b7c-397a990da879 1ab9dc07bb33783a726d1db8ba9f8450 { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04665.RNA-Seq.transcriptome.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 208c3c05-e8bc-49e0-8261-1c525c2d8a7e.rna_seq.transcriptome.gdc_realn.bam 8991822357 BAM transcriptome harmonized CPTAC3 759759a3-89e2-4d77-b249-02e912276054 b82bb1b54790e6a861a42fafa61efd28 { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04665.RNA-Seq.transcriptome.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 3f07253a-86e5-4704-9d43-c4cf4dcb2d33.rna_seq.transcriptome.gdc_realn.bam 8805607983 BAM transcriptome harmonized CPTAC3 4e3bd350-0059-4848-9efd-fd7210198dfb 16d4447af510a54ea0cbc6fe16401d07 { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04665.RNA-Seq.chimeric.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 a304f3ae-58b9-41a5-b69a-5cca2e6271e2.rna_seq.chimeric.gdc_realn.bam 255926204 BAM chimeric harmonized CPTAC3 635fba03-571f-4a75-891a-8053164e8045 7b42b2d47b3c999beecb8c2833ebb8f0 { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04665.RNA-Seq.chimeric.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 918d6389-24b0-47e9-99fb-01c25c025d36.rna_seq.chimeric.gdc_realn.bam 296969041 BAM chimeric harmonized CPTAC3 5706ec4c-275a-4fae-8158-67aa58f05306 23c39bc064a41065dd1a26131bce4e1a { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04665.RNA-Seq.genomic.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 a304f3ae-58b9-41a5-b69a-5cca2e6271e2.rna_seq.genomic.gdc_realn.bam 7667196025 BAM genomic harmonized CPTAC3 e5c7c433-7a68-427e-9b78-dd6c1b0b544f abeeff3a48e536034cf9506180a959f0 { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04665.RNA-Seq.genomic.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 918d6389-24b0-47e9-99fb-01c25c025d36.rna_seq.genomic.gdc_realn.bam 6607150847 BAM genomic harmonized CPTAC3 06037433-3e3c-4a0c-8a87-79c109046628 9805b140296201c3db939b3cea3f2d10 { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04665.RNA-Seq.R1_L001.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 3282015159 FASTQ R1_L001 unaligned CPTAC3 81481aff-e1d8-45ab-8755-17a61ff5915c 1cf9728e014a5efe458e0094a9e0325f { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-04665.RNA-Seq.R1_L002.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R1_001.fastq.gz 3747629000 FASTQ R1_L002 unaligned CPTAC3 1db3ad6b-515d-4fc3-ab1b-ae3fabdcc438 dc197baca7f1b32f20d197ce286022f1 { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-04665.RNA-Seq.R2_L001.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3724470408 FASTQ R2_L001 unaligned CPTAC3 a2b99b44-8278-422c-addc-0cbab637d56d 28a78fa66492a53a138f310ef7a03685 { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-04665.RNA-Seq.R2_L002.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R2_001.fastq.gz 4142893674 FASTQ R2_L002 unaligned CPTAC3 f2a6a325-7b60-442e-8b7c-397a990da879 1ab9dc07bb33783a726d1db8ba9f8450 { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-04665.RNA-Seq.transcriptome.A.hg38 C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 a304f3ae-58b9-41a5-b69a-5cca2e6271e2.rna_seq.transcriptome.gdc_realn.bam 10272208561 BAM transcriptome harmonized CPTAC3 dd810f2f-b990-481d-9942-1ad45b5879ea b11d6cd4651e398a8aebe2544d97e3c5 { 'aliquot_tag': 'ALQ_42bcf1a1', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04665.RNA-Seq.transcriptome.T.hg38 C3N-04665 LSCC RNA-Seq tumor CPT0333520010 918d6389-24b0-47e9-99fb-01c25c025d36.rna_seq.transcriptome.gdc_realn.bam 10066549910 BAM transcriptome harmonized CPTAC3 1aa37309-5578-4361-9d59-a0caeb4d612d 0a5371aedad1f33f780824212d4eb78f { 'aliquot_tag': 'ALQ_ad3b8de4', 'gdc_sample_type': 'Primary Tumor' } C3N-04665.WGS.N C3N-04665 LSCC WGS blood_normal CPT0333610002 CPT0333610002.WholeGenome.RP-2158.bam 25078124633 BAM aligned CPTAC3 7820c333-a662-4225-82e4-4b2e5df506bc 6b07674da95dc32561c228bb6cc0f8f8 { 'aliquot_tag': 'ALQ_9b1ad5f7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04665.WGS.N.hg38 C3N-04665 LSCC WGS blood_normal CPT0333610002 dd6ddc5f-e564-4258-aca4-fc8114d10eba_wgs_gdc_realn.bam 73831542731 BAM harmonized CPTAC3 7e34ed9f-21f1-483e-b904-094a98a12227 b944a3d5ad9894269df63c2b965b6f04 { 'aliquot_tag': 'ALQ_9b1ad5f7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04665.WGS.T C3N-04665 LSCC WGS tumor CPT0333520007 CPT0333520007.WholeGenome.RP-2158.bam 25184916025 BAM aligned CPTAC3 4792ea11-97a4-4ec9-a4eb-4d9ff70d9070 b00ce85e4028eee427dd042e1cf1378c { 'aliquot_tag': 'ALQ_2a442906', 'gdc_sample_type': 'Primary Tumor' } @@ -38031,11 +40436,11 @@ C3N-04673.MethArray.Green.T C3N-04673 LSCC Methylation Array tumor CPT0293380006 C3N-04673.MethArray.Red.T C3N-04673 LSCC Methylation Array tumor CPT0293380006 204367490082_R06C01_Red.idat 13677900 IDAT Red NA CPTAC3 2aa33831-946e-4150-8559-f858ec460128 193a6688f7c743798f7bfa4d621906ea { 'aliquot_tag': 'ALQ_4711eaa7', 'gdc_sample_type': 'Primary Tumor' } C3N-04673.miRNA-Seq.T C3N-04673 LSCC miRNA-Seq tumor CPT0293380009 200224_UNC31-K00269_0267_AHC722BBXY_ACTTGA_S8_L008_R1_001.unaln.bam 215568975 BAM unaligned CPTAC3 191d1827-ac93-4b43-8b01-2158ab10754e dfa2cf4e23d4b83034dc00ac57630798 { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor' } C3N-04673.miRNA-Seq.T.hg38 C3N-04673 LSCC miRNA-Seq tumor CPT0293380009 b714587e-749d-4596-9125-9b9986813c78_mirnaseq_gdc_realn.bam 247746274 BAM harmonized CPTAC3 e0bbd290-f0b8-45e3-89cc-24d8dd7e37f9 b3edff0bcb794db5a3d5b0047d6f41d6 { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor' } -C3N-04673.RNA-Seq.chimeric.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 db0529cc-651b-46fc-a592-44d6565e5cb8.rna_seq.chimeric.gdc_realn.bam 37780376 BAM chimeric harmonized CPTAC3 9462e4cd-27ff-44c9-9367-1dbbdcfae034 b4ecb61e5813d487c5b97020d3cbae8c { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor' } -C3N-04673.RNA-Seq.genomic.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 db0529cc-651b-46fc-a592-44d6565e5cb8.rna_seq.genomic.gdc_realn.bam 8730765950 BAM genomic harmonized CPTAC3 772f4060-51a5-4455-a480-1b0c57b4ce1c 4979fafe8ea78d1903f8b2f631ee4717 { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor' } -C3N-04673.RNA-Seq.R1_L002.T C3N-04673 LSCC RNA-Seq tumor CPT0293380009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L002_R1_001.fastq.gz 4368884839 FASTQ R1_L002 unaligned CPTAC3 6275c4d1-faa2-413a-b706-87387c66a97f b9d8c6a0dd3cd476c124a44236b9536c { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor' } -C3N-04673.RNA-Seq.R2_L002.T C3N-04673 LSCC RNA-Seq tumor CPT0293380009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L002_R2_001.fastq.gz 4697890786 FASTQ R2_L002 unaligned CPTAC3 78930632-295f-491b-b11a-b6464128ac8b c6ce4647ab18358e2e78480da45d590d { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor' } -C3N-04673.RNA-Seq.transcriptome.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 db0529cc-651b-46fc-a592-44d6565e5cb8.rna_seq.transcriptome.gdc_realn.bam 11864602749 BAM transcriptome harmonized CPTAC3 8b8e6ae2-5451-49cb-9f91-50b36aaf5df4 08dc479028c13631ce437df35ae635e9 { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor' } +C3N-04673.RNA-Seq.chimeric.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 cf96121c-a6fb-4b60-8bf6-022f0d77b7ae.rna_seq.chimeric.gdc_realn.bam 37786283 BAM chimeric harmonized CPTAC3 718eb02a-5181-4ffe-9000-ea6789ff3e10 e2200c9bb0361d75e17b6a902a582c44 { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor' } +C3N-04673.RNA-Seq.genomic.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 cf96121c-a6fb-4b60-8bf6-022f0d77b7ae.rna_seq.genomic.gdc_realn.bam 8732647620 BAM genomic harmonized CPTAC3 61714169-0609-4d03-b830-7c0321fbd479 1b3f3e484a4a350a7ea7d75587f209ec { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor' } +C3N-04673.RNA-Seq.R1_L002.T C3N-04673 LSCC RNA-Seq tumor CPT0293380009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L002_R1_001.fastq.gz 4368884839 FASTQ R1_L002 unaligned CPTAC3 6275c4d1-faa2-413a-b706-87387c66a97f b9d8c6a0dd3cd476c124a44236b9536c { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-04673.RNA-Seq.R2_L002.T C3N-04673 LSCC RNA-Seq tumor CPT0293380009 200505_UNC32-K00270_0245_AHH5FVBBXY_TGGATCGA-GTGCGATA_S8_L002_R2_001.fastq.gz 4697890786 FASTQ R2_L002 unaligned CPTAC3 78930632-295f-491b-b11a-b6464128ac8b c6ce4647ab18358e2e78480da45d590d { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-04673.RNA-Seq.transcriptome.T.hg38 C3N-04673 LSCC RNA-Seq tumor CPT0293380009 cf96121c-a6fb-4b60-8bf6-022f0d77b7ae.rna_seq.transcriptome.gdc_realn.bam 13397484474 BAM transcriptome harmonized CPTAC3 d625d26e-6f37-41cc-bac7-6d0e11f03450 0a8f08ec3be8ded38991a666db7289bc { 'aliquot_tag': 'ALQ_d7aef736', 'gdc_sample_type': 'Primary Tumor' } C3N-04673.WGS.N C3N-04673 LSCC WGS blood_normal CPT0293420002 CPT0293420002.WholeGenome.RP-2158.bam 25389182238 BAM aligned CPTAC3 de2b554f-e7c2-493a-819e-81233c40c120 02f4c4e38c678dcfb370eca8c35ece8e { 'aliquot_tag': 'ALQ_17c906a7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04673.WGS.N.hg38 C3N-04673 LSCC WGS blood_normal CPT0293420002 2146b731-6763-48fb-a3eb-b18ee89cfb73_wgs_gdc_realn.bam 74356314911 BAM harmonized CPTAC3 e54044d4-1010-4a9d-a0ae-fcc4b14d8126 2ebe242be637818d173ea615896d95f0 { 'aliquot_tag': 'ALQ_17c906a7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04673.WGS.T C3N-04673 LSCC WGS tumor CPT0293380006 CPT0293380006.WholeGenome.RP-2158.bam 26421022844 BAM aligned CPTAC3 1d027ec3-4a87-4b62-ad91-a760d6e8c94c e9fe1621062bf623a383ec6232054691 { 'aliquot_tag': 'ALQ_4711eaa7', 'gdc_sample_type': 'Primary Tumor' } @@ -38048,11 +40453,11 @@ C3N-04683.MethArray.Green.T C3N-04683 GBM Methylation Array tumor CPT0293480006 C3N-04683.MethArray.Red.T C3N-04683 GBM Methylation Array tumor CPT0293480006 204372030013_R02C01_Red.idat 13677895 IDAT Red NA CPTAC3 218867cf-8cd8-43a3-ab6c-6459ee4a842a 2fbba98dc38ec29189f346e85cda4fe4 { 'aliquot_tag': 'ALQ_5a14da1f', 'gdc_sample_type': 'Primary Tumor' } C3N-04683.miRNA-Seq.T C3N-04683 GBM miRNA-Seq tumor CPT0293480009 200513_UNC31-K00269_0278_BHH7Y7BBXY_TCATTC_S45_L008_R1_001.unaln.bam 221888762 BAM unaligned CPTAC3 4cb38538-f774-49dd-b1f9-6cd0752fc269 fe119ff3ceb7c359bc555044bbd9affa { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor' } C3N-04683.miRNA-Seq.T.hg38 C3N-04683 GBM miRNA-Seq tumor CPT0293480009 16109734-8b9d-4364-9c77-bacca3460cf4_mirnaseq_gdc_realn.bam 246174415 BAM harmonized CPTAC3 311a4ebe-7e72-4e55-a502-bd47c7a135a1 cae4d98340d45be7130a7ea7db450491 { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04683.RNA-Seq.chimeric.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 e51007a0-16e8-482d-8613-f61b190956d4.rna_seq.chimeric.gdc_realn.bam 31651483 BAM chimeric harmonized CPTAC3 39b1622b-e8bb-425f-8e5f-a0c4864f7dde 7ac88dac4054d6a4b4f1b40439e39f1d { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04683.RNA-Seq.genomic.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 e51007a0-16e8-482d-8613-f61b190956d4.rna_seq.genomic.gdc_realn.bam 7373172926 BAM genomic harmonized CPTAC3 1a7ec92e-ca6b-49f3-a959-6e3505b4f4b2 871c7cf1468e045d7b55d16415471d86 { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04683.RNA-Seq.R1_L007.T C3N-04683 GBM RNA-Seq tumor CPT0293480009 200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R1_001.fastq.gz 3540596161 FASTQ R1_L007 unaligned CPTAC3 4501fe75-7e04-4fc8-9b96-80dc695086b6 0e4cf879fa33f40b221ceb74689ecf6e { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04683.RNA-Seq.R2_L007.T C3N-04683 GBM RNA-Seq tumor CPT0293480009 200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R2_001.fastq.gz 3777387208 FASTQ R2_L007 unaligned CPTAC3 e7334afa-2cbe-448d-9768-0bff2678dec7 6b87dfb9970d0cf2e5316a174e6d8577 { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor' } -C3N-04683.RNA-Seq.transcriptome.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 e51007a0-16e8-482d-8613-f61b190956d4.rna_seq.transcriptome.gdc_realn.bam 7485209919 BAM transcriptome harmonized CPTAC3 74be4497-5558-4d0e-b954-b761c3215800 e2ac104891ed7b313baf4a5fe49498c2 { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04683.RNA-Seq.chimeric.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 40c42d4f-60c8-4732-b8f0-22bf4773305d.rna_seq.chimeric.gdc_realn.bam 31617774 BAM chimeric harmonized CPTAC3 b31a92cf-9062-44d8-8751-8cc5cd81f972 d6ab1e329e19a6684f8db9853bb3bf04 { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04683.RNA-Seq.genomic.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 40c42d4f-60c8-4732-b8f0-22bf4773305d.rna_seq.genomic.gdc_realn.bam 7374346290 BAM genomic harmonized CPTAC3 4437ef66-d3f6-4442-a058-e446f580b3cd 130a697ca4b70e881cbb1061dd803eb9 { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor' } +C3N-04683.RNA-Seq.R1_L007.T C3N-04683 GBM RNA-Seq tumor CPT0293480009 200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R1_001.fastq.gz 3540596161 FASTQ R1_L007 unaligned CPTAC3 4501fe75-7e04-4fc8-9b96-80dc695086b6 0e4cf879fa33f40b221ceb74689ecf6e { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-04683.RNA-Seq.R2_L007.T C3N-04683 GBM RNA-Seq tumor CPT0293480009 200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R2_001.fastq.gz 3777387208 FASTQ R2_L007 unaligned CPTAC3 e7334afa-2cbe-448d-9768-0bff2678dec7 6b87dfb9970d0cf2e5316a174e6d8577 { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-04683.RNA-Seq.transcriptome.T.hg38 C3N-04683 GBM RNA-Seq tumor CPT0293480009 40c42d4f-60c8-4732-b8f0-22bf4773305d.rna_seq.transcriptome.gdc_realn.bam 8737814989 BAM transcriptome harmonized CPTAC3 ff11363d-4ef7-403b-a223-7ead34a39590 3af3be81a150497b3402dd1902b6d969 { 'aliquot_tag': 'ALQ_caabc78e', 'gdc_sample_type': 'Primary Tumor' } C3N-04683.WGS.N C3N-04683 GBM WGS blood_normal CPT0293500002 CPT0293500002.WholeGenome.RP-2158.bam 23861570825 BAM aligned CPTAC3 069f7c09-b676-4e5a-ba82-2a9a294626e4 ccc32d0f3fc0645e429797f55e51564f { 'aliquot_tag': 'ALQ_a6558662', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04683.WGS.N.hg38 C3N-04683 GBM WGS blood_normal CPT0293500002 83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wgs_gdc_realn.bam 71643728765 BAM harmonized CPTAC3 f3bee196-c66b-45c1-92f3-fb04a65c0b65 ccdfbbaeb5ce4a4620f1005631128dee { 'aliquot_tag': 'ALQ_a6558662', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04683.WGS.T C3N-04683 GBM WGS tumor CPT0293480006 CPT0293480006.WholeGenome.RP-2158.bam 26158848666 BAM aligned CPTAC3 d33daf31-0425-4a15-8b2f-481a5eb955d3 7e58ca71df02cbbaff91ea66fdefc4c1 { 'aliquot_tag': 'ALQ_5a14da1f', 'gdc_sample_type': 'Primary Tumor' } @@ -38065,11 +40470,11 @@ C3N-04686.MethArray.Green.T C3N-04686 GBM Methylation Array tumor CPT0293570006 C3N-04686.MethArray.Red.T C3N-04686 GBM Methylation Array tumor CPT0293570006 204367490084_R02C01_Red.idat 13677890 IDAT Red NA CPTAC3 b80b6883-9978-4079-83f6-221061a28c57 2c7736cb9a6f9eb1613fc473f56fc5ff { 'aliquot_tag': 'ALQ_13189e6b', 'gdc_sample_type': 'Primary Tumor' } C3N-04686.miRNA-Seq.T C3N-04686 GBM miRNA-Seq tumor CPT0293570009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CCAACA_S36_L008_R1_001.unaln.bam 258556529 BAM unaligned CPTAC3 caf47f87-2541-49f0-ad07-f4c0332f823c 1fb2bda6ad5031c47939141caab55161 { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor' } C3N-04686.miRNA-Seq.T.hg38 C3N-04686 GBM miRNA-Seq tumor CPT0293570009 4ea5c927-9285-40e9-b09b-04885b88f969_mirnaseq_gdc_realn.bam 290410092 BAM harmonized CPTAC3 549a369e-c652-493b-a59b-a2ed261aa15f adeafb633053955ac290bdbe2310e9e1 { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-04686.RNA-Seq.chimeric.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 bbff1013-b568-4778-87fd-f10612d2afbb.rna_seq.chimeric.gdc_realn.bam 29756415 BAM chimeric harmonized CPTAC3 15582f05-5664-4ea4-8bc8-b6d9b060106f 127aa3b72fb0ffcadb5b9be74b7daecc { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-04686.RNA-Seq.genomic.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 bbff1013-b568-4778-87fd-f10612d2afbb.rna_seq.genomic.gdc_realn.bam 8201751030 BAM genomic harmonized CPTAC3 99375aa8-7f55-4a27-897d-854cf51bafd8 1c807c3eaca2e22c64030dd8898a6c91 { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-04686.RNA-Seq.R1_L004.T C3N-04686 GBM RNA-Seq tumor CPT0293570009 200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R1_001.fastq.gz 4034400313 FASTQ R1_L004 unaligned CPTAC3 157280cb-210f-407f-997c-cbd5fbd18578 e0f8294a1eb035c954a3fbc05b11716d { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-04686.RNA-Seq.R2_L004.T C3N-04686 GBM RNA-Seq tumor CPT0293570009 200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R2_001.fastq.gz 4294925927 FASTQ R2_L004 unaligned CPTAC3 6d47e078-6b42-4a7e-abcc-5a82b3dfd843 1721a99d2d7018e1c7e25d1ea23ff2ef { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor' } -C3N-04686.RNA-Seq.transcriptome.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 bbff1013-b568-4778-87fd-f10612d2afbb.rna_seq.transcriptome.gdc_realn.bam 8560997000 BAM transcriptome harmonized CPTAC3 deec8791-d42f-42d4-9bea-26b2a8123d4a d9b7129af4f4d9b947e25e18d44df6cb { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor' } +C3N-04686.RNA-Seq.chimeric.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 506811f1-4beb-4696-852f-df0d9f928ef9.rna_seq.chimeric.gdc_realn.bam 29743783 BAM chimeric harmonized CPTAC3 31126ba1-8293-471b-b815-262d1e328b23 346356e7e24eaa08ce523ee50f5f309f { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor' } +C3N-04686.RNA-Seq.genomic.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 506811f1-4beb-4696-852f-df0d9f928ef9.rna_seq.genomic.gdc_realn.bam 8202374839 BAM genomic harmonized CPTAC3 01349435-6f3c-49d4-af02-17a528fffac2 488e603b5703b00166a65fc75743f0c0 { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor' } +C3N-04686.RNA-Seq.R1_L004.T C3N-04686 GBM RNA-Seq tumor CPT0293570009 200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R1_001.fastq.gz 4034400313 FASTQ R1_L004 unaligned CPTAC3 157280cb-210f-407f-997c-cbd5fbd18578 e0f8294a1eb035c954a3fbc05b11716d { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-04686.RNA-Seq.R2_L004.T C3N-04686 GBM RNA-Seq tumor CPT0293570009 200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R2_001.fastq.gz 4294925927 FASTQ R2_L004 unaligned CPTAC3 6d47e078-6b42-4a7e-abcc-5a82b3dfd843 1721a99d2d7018e1c7e25d1ea23ff2ef { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-04686.RNA-Seq.transcriptome.T.hg38 C3N-04686 GBM RNA-Seq tumor CPT0293570009 506811f1-4beb-4696-852f-df0d9f928ef9.rna_seq.transcriptome.gdc_realn.bam 9892164091 BAM transcriptome harmonized CPTAC3 01f4dfba-1e37-4677-af80-e1367363ef1d 39e6af1a221a8eca8de191d57de4c37f { 'aliquot_tag': 'ALQ_83a783fa', 'gdc_sample_type': 'Primary Tumor' } C3N-04686.WGS.N C3N-04686 GBM WGS blood_normal CPT0293620002 CPT0293620002.WholeGenome.RP-2158.bam 22070360060 BAM aligned CPTAC3 e8306e62-ec47-4ca0-b8ba-9fa4b7a668e7 b77b1506c350d139b34023b8960abd87 { 'aliquot_tag': 'ALQ_5a01a7ac', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04686.WGS.N.hg38 C3N-04686 GBM WGS blood_normal CPT0293620002 04d7ff8e-1924-477d-a04b-5eaef2815a7d_wgs_gdc_realn.bam 66143723882 BAM harmonized CPTAC3 1617d7cd-32d7-40c4-92a8-c7d33265aeea 980bdbd23325fd3b1145f84b10c00cc6 { 'aliquot_tag': 'ALQ_5a01a7ac', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04686.WGS.T C3N-04686 GBM WGS tumor CPT0293570006 CPT0293570006.WholeGenome.RP-2158.bam 26806647950 BAM aligned CPTAC3 224d7c26-b579-4717-864d-ea58579ea40f f4dc76a7a066aa6b0f1e837e42b51d66 { 'aliquot_tag': 'ALQ_13189e6b', 'gdc_sample_type': 'Primary Tumor' } @@ -38082,11 +40487,11 @@ C3N-04687.MethArray.Green.T C3N-04687 GBM Methylation Array tumor CPT0293640006 C3N-04687.MethArray.Red.T C3N-04687 GBM Methylation Array tumor CPT0293640006 204930630082_R07C01_Red.idat 13677900 IDAT Red NA CPTAC3 be21d657-eedf-4d89-8883-cb7eb242f3f6 077bd220d44cce7bf8eebc72752a790d { 'aliquot_tag': 'ALQ_d22c9615', 'gdc_sample_type': 'Primary Tumor' } C3N-04687.miRNA-Seq.T C3N-04687 GBM miRNA-Seq tumor CPT0293640009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACAGTG_S22_L007_R1_001.unaln.bam 208503100 BAM unaligned CPTAC3 2cf5871c-e227-4a62-a47f-4f7b400d3b9f 2f4d1d2017eb4ebd438b63f8b0ee945d { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor' } C3N-04687.miRNA-Seq.T.hg38 C3N-04687 GBM miRNA-Seq tumor CPT0293640009 7a186112-57f4-4454-8e2b-e1cb78dabdf4_mirnaseq_gdc_realn.bam 228891390 BAM harmonized CPTAC3 f420bc48-fe3b-4717-b2fa-79faed28c2ca ec6cdaca9cf9e6c064182f096b3d0c66 { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor' } -C3N-04687.RNA-Seq.chimeric.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 967189c9-3801-48cf-8f66-5a3778ae8f27.rna_seq.chimeric.gdc_realn.bam 616236730 BAM chimeric harmonized CPTAC3 44cc36ce-5251-410a-9032-7f28ff2c604d 6a89dabf7060d16f434ebbf5382e4625 { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor' } -C3N-04687.RNA-Seq.genomic.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 967189c9-3801-48cf-8f66-5a3778ae8f27.rna_seq.genomic.gdc_realn.bam 11863165641 BAM genomic harmonized CPTAC3 16e82122-8071-438c-9845-599931d9b669 6a686e0926d3b74a408000e19dbf6a85 { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor' } -C3N-04687.RNA-Seq.R1_L002.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R1_001.fastq.gz 5821355811 FASTQ R1_L002 unaligned CPTAC3 5813883a-bd76-4717-b554-85107c414177 42954edf1fc37e2a6a1190c29ca3837d { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor' } -C3N-04687.RNA-Seq.R2_L002.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R2_001.fastq.gz 6394634933 FASTQ R2_L002 unaligned CPTAC3 88fe2168-5fc0-4f42-87f2-19dceb47c4e3 77cd363131876e03e6634aa1c5909f27 { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor' } -C3N-04687.RNA-Seq.transcriptome.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 967189c9-3801-48cf-8f66-5a3778ae8f27.rna_seq.transcriptome.gdc_realn.bam 11190342929 BAM transcriptome harmonized CPTAC3 97637600-9261-41d1-8efc-0b8c611b5007 32782c735dc89d2747d27ee5e7fd6c66 { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor' } +C3N-04687.RNA-Seq.chimeric.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.chimeric.gdc_realn.bam 616341390 BAM chimeric harmonized CPTAC3 5ae2757b-4012-4eca-9163-3e0faae2265f b151c39e6c99350b0d43b89adabcb1a8 { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor' } +C3N-04687.RNA-Seq.genomic.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.genomic.gdc_realn.bam 11869610513 BAM genomic harmonized CPTAC3 18d53c42-543f-40cd-a958-3d1a1437b8bc af017e3e462dea9f897a747e104e1331 { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor' } +C3N-04687.RNA-Seq.R1_L002.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R1_001.fastq.gz 5821355811 FASTQ R1_L002 unaligned CPTAC3 5813883a-bd76-4717-b554-85107c414177 42954edf1fc37e2a6a1190c29ca3837d { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-04687.RNA-Seq.R2_L002.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R2_001.fastq.gz 6394634933 FASTQ R2_L002 unaligned CPTAC3 88fe2168-5fc0-4f42-87f2-19dceb47c4e3 77cd363131876e03e6634aa1c5909f27 { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-04687.RNA-Seq.transcriptome.T.hg38 C3N-04687 GBM RNA-Seq tumor CPT0293640009 a301ef61-2edf-4ac5-983f-abf02d821bee.rna_seq.transcriptome.gdc_realn.bam 12890932666 BAM transcriptome harmonized CPTAC3 a54a1eb3-b948-4cbd-ba01-813bd331e9f8 31f74ebe6dcff3e540e42e4e97713666 { 'aliquot_tag': 'ALQ_42938b84', 'gdc_sample_type': 'Primary Tumor' } C3N-04687.WGS.N C3N-04687 GBM WGS blood_normal CPT0293690002 CPT0293690002.WholeGenome.RP-2158.bam 27529329254 BAM aligned CPTAC3 5168a4c1-d7bf-4315-9416-7ca03219f455 676212b8c52b9fca93a8b6f6abd90b97 { 'aliquot_tag': 'ALQ_2dd196bd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04687.WGS.N.hg38 C3N-04687 GBM WGS blood_normal CPT0293690002 89cc8a15-7059-48f4-b028-36add2ef000e_wgs_gdc_realn.bam 82172701135 BAM harmonized CPTAC3 a12ebbd1-84fa-441b-8b7e-019cbde83059 cf407141f3a1121e2ce622324dadb69b { 'aliquot_tag': 'ALQ_2dd196bd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04687.WGS.T C3N-04687 GBM WGS tumor CPT0293640006 CPT0293640006.WholeGenome.RP-2158.bam 24215834475 BAM aligned CPTAC3 78c0a239-fa60-437f-9f48-deed8e1bdf75 329a9eaead33c085c72a82db6584a92a { 'aliquot_tag': 'ALQ_d22c9615', 'gdc_sample_type': 'Primary Tumor' } @@ -38095,19 +40500,25 @@ C3N-04687.WXS.N C3N-04687 GBM WXS blood_normal CPT0293690002 CPT0293690002.Whole C3N-04687.WXS.N.hg38 C3N-04687 GBM WXS blood_normal CPT0293690002 89cc8a15-7059-48f4-b028-36add2ef000e_wxs_gdc_realn.bam 34658403577 BAM harmonized CPTAC3 24cdf0cb-e910-4e7b-854d-88a58b9fc6cd 9f3cb128be754dc46090c14466277e77 { 'aliquot_tag': 'ALQ_2dd196bd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04687.WXS.T C3N-04687 GBM WXS tumor CPT0293640006 CPT0293640006.WholeExome.RP-1303.bam 18900010222 BAM aligned CPTAC3 612866d9-7349-4e34-a5df-b9b8974ceba4 f7ebadc8f54cfecfd93a5923b4b351a8 { 'aliquot_tag': 'ALQ_d22c9615', 'gdc_sample_type': 'Primary Tumor' } C3N-04687.WXS.T.hg38 C3N-04687 GBM WXS tumor CPT0293640006 8d5b75ae-e777-4df1-8837-4a71d060d681_wxs_gdc_realn.bam 25765521874 BAM harmonized CPTAC3 56d88fed-d037-4804-a093-b009c714bd85 540e21342eab6e05f6fc70fef7e7b119 { 'aliquot_tag': 'ALQ_d22c9615', 'gdc_sample_type': 'Primary Tumor' } -C3N-04688.RNA-Seq.R1_.T C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 20210729_P3_A6_WB7988-Plate3_S6_R1_001.fastq.gz 4495689608 FASTQ R1_ unaligned CPTAC3 3dfcb302-6978-4bfa-9986-d63485bffa00 141d3074cd55b2046be94e1da8f5e1d2 { 'aliquot_tag': 'ALQ_8a5fa39b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04688.RNA-Seq.R2_.T C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 20210729_P3_A6_WB7988-Plate3_S6_R2_001.fastq.gz 4665353178 FASTQ R2_ unaligned CPTAC3 f4aee9ea-7564-4b34-b48a-6b075d30ac05 f540d35465674bb365a544283e840565 { 'aliquot_tag': 'ALQ_8a5fa39b', 'gdc_sample_type': 'Primary Tumor' } -C3N-04689.RNA-Seq.R1_.T C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 20210729_P3_E6_WB7988-Plate3_S54_R1_001.fastq.gz 3966281016 FASTQ R1_ unaligned CPTAC3 b6b7d197-cd63-443b-94a4-6bbf901f93b9 574e76ed5540a49687018d17a6b59d8c { 'aliquot_tag': 'ALQ_3cbb9af4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04689.RNA-Seq.R2_.T C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 20210729_P3_E6_WB7988-Plate3_S54_R2_001.fastq.gz 4071577972 FASTQ R2_ unaligned CPTAC3 380cf5f9-c798-449a-953f-f746c14a527c 0301c71e8650587f8c2cb0acbb885f17 { 'aliquot_tag': 'ALQ_3cbb9af4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04688.RNA-Seq.chimeric.T.hg38 C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 ce0991a5-1dbf-41b2-9d81-9a248cee559c.rna_seq.chimeric.gdc_realn.bam 82810764 BAM chimeric harmonized CPTAC3 85686f00-7d26-49b8-b0bb-8f992536671d 8e3e8e44b37daf3e2e3b791d576de1b0 { 'aliquot_tag': 'ALQ_8a5fa39b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04688.RNA-Seq.genomic.T.hg38 C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 ce0991a5-1dbf-41b2-9d81-9a248cee559c.rna_seq.genomic.gdc_realn.bam 7562646517 BAM genomic harmonized CPTAC3 22fa1665-8d52-4b87-88e5-bf69f7652fad 12e28695303067b58648cc77169a984d { 'aliquot_tag': 'ALQ_8a5fa39b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04688.RNA-Seq.T C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 20210729_P3_A6_WB7988-Plate3_S6_R1_001.fastq.gz 4495689608 FASTQ unaligned CPTAC3 3dfcb302-6978-4bfa-9986-d63485bffa00 141d3074cd55b2046be94e1da8f5e1d2 +C3N-04688.RNA-Seq.T C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 20210729_P3_A6_WB7988-Plate3_S6_R2_001.fastq.gz 4665353178 FASTQ unaligned CPTAC3 f4aee9ea-7564-4b34-b48a-6b075d30ac05 f540d35465674bb365a544283e840565 +C3N-04688.RNA-Seq.transcriptome.T.hg38 C3N-04688 HNSCC RNA-Seq tumor CPT0354580001 ce0991a5-1dbf-41b2-9d81-9a248cee559c.rna_seq.transcriptome.gdc_realn.bam 6471833677 BAM transcriptome harmonized CPTAC3 e1abff5c-441d-4d5c-8a32-544f168c61b5 358ea9b57f2d8b9a0e026bddda0d2bb6 { 'aliquot_tag': 'ALQ_8a5fa39b', 'gdc_sample_type': 'Primary Tumor' } +C3N-04689.RNA-Seq.chimeric.T.hg38 C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 339867a3-a921-4dbf-b0fb-fc13e80e1216.rna_seq.chimeric.gdc_realn.bam 102857264 BAM chimeric harmonized CPTAC3 54a5a599-d3a6-44b6-8aa3-661d4f14df2d 8d5373f0180e57539bf3702fba04d385 { 'aliquot_tag': 'ALQ_3cbb9af4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04689.RNA-Seq.genomic.T.hg38 C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 339867a3-a921-4dbf-b0fb-fc13e80e1216.rna_seq.genomic.gdc_realn.bam 5977554989 BAM genomic harmonized CPTAC3 8bf77e51-8f61-4c7b-aa1c-837c8d0ed78c 88fc3fd2ef2b99d718cc39c29191c043 { 'aliquot_tag': 'ALQ_3cbb9af4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04689.RNA-Seq.T C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 20210729_P3_E6_WB7988-Plate3_S54_R1_001.fastq.gz 3966281016 FASTQ unaligned CPTAC3 b6b7d197-cd63-443b-94a4-6bbf901f93b9 574e76ed5540a49687018d17a6b59d8c +C3N-04689.RNA-Seq.T C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 20210729_P3_E6_WB7988-Plate3_S54_R2_001.fastq.gz 4071577972 FASTQ unaligned CPTAC3 380cf5f9-c798-449a-953f-f746c14a527c 0301c71e8650587f8c2cb0acbb885f17 +C3N-04689.RNA-Seq.transcriptome.T.hg38 C3N-04689 HNSCC RNA-Seq tumor CPT0354600001 339867a3-a921-4dbf-b0fb-fc13e80e1216.rna_seq.transcriptome.gdc_realn.bam 4742032571 BAM transcriptome harmonized CPTAC3 2e231368-70eb-43d8-ab8c-d2e3beb8ada0 756d7cf9cf563dbe193de4652222fb9f { 'aliquot_tag': 'ALQ_3cbb9af4', 'gdc_sample_type': 'Primary Tumor' } C3N-04691.MethArray.Green.T C3N-04691 GBM Methylation Array tumor CPT0293770006 204372030087_R03C01_Grn.idat 13677880 IDAT Green NA CPTAC3 e6ee78a8-883c-4e1e-b06a-fd6adba317a5 c2c7fec8024b412ccdac55b4483d1280 { 'aliquot_tag': 'ALQ_5ed03f60', 'gdc_sample_type': 'Primary Tumor' } C3N-04691.MethArray.Red.T C3N-04691 GBM Methylation Array tumor CPT0293770006 204372030087_R03C01_Red.idat 13677880 IDAT Red NA CPTAC3 c93601c7-11a6-48c9-abd0-438d65809d42 164f5511997b9881a45830151f569c28 { 'aliquot_tag': 'ALQ_5ed03f60', 'gdc_sample_type': 'Primary Tumor' } C3N-04691.miRNA-Seq.T C3N-04691 GBM miRNA-Seq tumor CPT0293770009 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATGGC_S34_L008_R1_001.unaln.bam 281130791 BAM unaligned CPTAC3 6d5df380-8272-4933-856f-c8c14cddf5ab 73e7bbc759479d193fc3c9f07a9bd616 { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor' } C3N-04691.miRNA-Seq.T.hg38 C3N-04691 GBM miRNA-Seq tumor CPT0293770009 b802112b-e57a-481c-b292-a6560fb62db4_mirnaseq_gdc_realn.bam 306479091 BAM harmonized CPTAC3 4f19e4ce-59e2-4562-a3a7-d871d430abbe 7ec6c46dc0f0105dd46e9845cf1ef9eb { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-04691.RNA-Seq.chimeric.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 3681fe8e-06ac-4060-9234-5e6f83141e7a.rna_seq.chimeric.gdc_realn.bam 22738549 BAM chimeric harmonized CPTAC3 d30af018-5b37-437b-b32f-5d21e2a3e6bd 82206598fdca270a7c171d6368dde9d5 { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-04691.RNA-Seq.genomic.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 3681fe8e-06ac-4060-9234-5e6f83141e7a.rna_seq.genomic.gdc_realn.bam 7182569300 BAM genomic harmonized CPTAC3 b2dd8a2e-26a8-4550-a48b-35a95513eb7f d54753359b14b04cde455999b8a04193 { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-04691.RNA-Seq.R1_L004.T C3N-04691 GBM RNA-Seq tumor CPT0293770009 200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R1_001.fastq.gz 3454065249 FASTQ R1_L004 unaligned CPTAC3 8b611a73-3ec3-456e-95fd-6f25ee476c28 b987b9f75087bfbda8af2a1dc31860fe { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-04691.RNA-Seq.R2_L004.T C3N-04691 GBM RNA-Seq tumor CPT0293770009 200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R2_001.fastq.gz 3703572856 FASTQ R2_L004 unaligned CPTAC3 0a016bfe-4773-486e-be6e-af9ed353c9b5 b0f5d363b67f3f3bace1ca7b157c7bc9 { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor' } -C3N-04691.RNA-Seq.transcriptome.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 3681fe8e-06ac-4060-9234-5e6f83141e7a.rna_seq.transcriptome.gdc_realn.bam 8272569453 BAM transcriptome harmonized CPTAC3 17a856f3-7015-4faa-9039-04fb6083bc58 6c9e63d7792e58dff6e437b783aaa5d3 { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor' } +C3N-04691.RNA-Seq.chimeric.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 8ed436d4-a871-492b-aead-92d2bd0ae626.rna_seq.chimeric.gdc_realn.bam 22719015 BAM chimeric harmonized CPTAC3 16bdd14b-9643-46a7-aa41-fae95268c477 4dddc0c1c446da18173409cd0c54f828 { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor' } +C3N-04691.RNA-Seq.genomic.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 8ed436d4-a871-492b-aead-92d2bd0ae626.rna_seq.genomic.gdc_realn.bam 7183697291 BAM genomic harmonized CPTAC3 771e6bd6-9373-44f7-b866-1caab8fa613c 75df748b1cbbc31a321aa03eb1c8a349 { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor' } +C3N-04691.RNA-Seq.R1_L004.T C3N-04691 GBM RNA-Seq tumor CPT0293770009 200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R1_001.fastq.gz 3454065249 FASTQ R1_L004 unaligned CPTAC3 8b611a73-3ec3-456e-95fd-6f25ee476c28 b987b9f75087bfbda8af2a1dc31860fe { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-04691.RNA-Seq.R2_L004.T C3N-04691 GBM RNA-Seq tumor CPT0293770009 200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R2_001.fastq.gz 3703572856 FASTQ R2_L004 unaligned CPTAC3 0a016bfe-4773-486e-be6e-af9ed353c9b5 b0f5d363b67f3f3bace1ca7b157c7bc9 { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-04691.RNA-Seq.transcriptome.T.hg38 C3N-04691 GBM RNA-Seq tumor CPT0293770009 8ed436d4-a871-492b-aead-92d2bd0ae626.rna_seq.transcriptome.gdc_realn.bam 9423599268 BAM transcriptome harmonized CPTAC3 dc240c9c-4410-49f6-9a0b-7dc80b3b8dce d7bf4a982584ab518bf40089defbc6a9 { 'aliquot_tag': 'ALQ_ce6f22f1', 'gdc_sample_type': 'Primary Tumor' } C3N-04691.WGS.N C3N-04691 GBM WGS blood_normal CPT0293790002 CPT0293790002.WholeGenome.RP-2158.bam 22737036630 BAM aligned CPTAC3 9861bacf-115c-4f88-8afd-217c8e872070 9824c46fe95cd1ae4f8c42efc543be38 { 'aliquot_tag': 'ALQ_e68d4518', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04691.WGS.N.hg38 C3N-04691 GBM WGS blood_normal CPT0293790002 cdd22aae-ff9d-430d-a275-1da5f8befaab_wgs_gdc_realn.bam 69525083202 BAM harmonized CPTAC3 7a1f5582-fc6d-4c7f-9da4-b605a67108ea 912fe36f73fd4c48ce1501cf7a2ab55a { 'aliquot_tag': 'ALQ_e68d4518', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04691.WGS.T C3N-04691 GBM WGS tumor CPT0293770006 CPT0293770006.WholeGenome.RP-2158.bam 26615436611 BAM aligned CPTAC3 5b36d3a4-75cd-4f1d-bd42-a4465f2d1aaf 566348b7e5d3b25a08530ead22d3ce5c { 'aliquot_tag': 'ALQ_5ed03f60', 'gdc_sample_type': 'Primary Tumor' } @@ -38120,11 +40531,11 @@ C3N-04693.MethArray.Green.T C3N-04693 GBM Methylation Array tumor CPT0293800006 C3N-04693.MethArray.Red.T C3N-04693 GBM Methylation Array tumor CPT0293800006 204367460011_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 9dd8897c-937f-4c68-9ed1-5150a59bbb16 854fbe168baaf4ef8f0407977f1ac04b { 'aliquot_tag': 'ALQ_1da651a5', 'gdc_sample_type': 'Primary Tumor' } C3N-04693.miRNA-Seq.T C3N-04693 GBM miRNA-Seq tumor CPT0293800009 200224_UNC31-K00269_0267_AHC722BBXY_ATCACG_S1_L008_R1_001.unaln.bam 220351053 BAM unaligned CPTAC3 81b73edc-26ae-4642-9dd0-84e7340fd485 9d6e3626af40742d214c9e36908398d8 { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor' } C3N-04693.miRNA-Seq.T.hg38 C3N-04693 GBM miRNA-Seq tumor CPT0293800009 307ae310-cd8b-4c18-aad1-2953d96267b7_mirnaseq_gdc_realn.bam 245401329 BAM harmonized CPTAC3 c2efe5e4-452b-4071-a687-3f86307753dd 94d97309aab24a056fb28904502c2cb8 { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor' } -C3N-04693.RNA-Seq.chimeric.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 d2582994-d682-4d05-97cd-82ef307e6b13.rna_seq.chimeric.gdc_realn.bam 52451683 BAM chimeric harmonized CPTAC3 57631e80-97d1-4163-ad9a-79b51d0c8a20 4391711395676b60ada37b463406acb3 { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor' } -C3N-04693.RNA-Seq.genomic.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 d2582994-d682-4d05-97cd-82ef307e6b13.rna_seq.genomic.gdc_realn.bam 11330739789 BAM genomic harmonized CPTAC3 6631fd2e-2bd5-4a50-a92e-88d3897c6ca9 59c04029ffeaa7a099e42cbed5b71e9b { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor' } -C3N-04693.RNA-Seq.R1_L001.T C3N-04693 GBM RNA-Seq tumor CPT0293800009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R1_001.fastq.gz 5469084994 FASTQ R1_L001 unaligned CPTAC3 95e19f64-f558-4704-b020-3cc06287e7f4 ebc4a382c65532a43ce9ee0e2293f80d { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor' } -C3N-04693.RNA-Seq.R2_L001.T C3N-04693 GBM RNA-Seq tumor CPT0293800009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R2_001.fastq.gz 6147478036 FASTQ R2_L001 unaligned CPTAC3 7144248c-c457-48a8-bd20-e742f014d9bd f527f436ba9c7a431eee4a2d0727cd91 { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor' } -C3N-04693.RNA-Seq.transcriptome.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 d2582994-d682-4d05-97cd-82ef307e6b13.rna_seq.transcriptome.gdc_realn.bam 13528436735 BAM transcriptome harmonized CPTAC3 5e51acac-933b-4f9f-9235-6bf644bc0d58 0e3f05806d8cecff1134b1f8fd674cf2 { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor' } +C3N-04693.RNA-Seq.chimeric.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 03313b31-f1a5-4379-bad9-9e46eea470d6.rna_seq.chimeric.gdc_realn.bam 52422897 BAM chimeric harmonized CPTAC3 4a6155a0-ca05-4ec1-ad7b-27e3f43dc7c3 f23d36c5108e3a9e0eb25e534d49c728 { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor' } +C3N-04693.RNA-Seq.genomic.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 03313b31-f1a5-4379-bad9-9e46eea470d6.rna_seq.genomic.gdc_realn.bam 11331977929 BAM genomic harmonized CPTAC3 864dd29c-c2f7-4d60-840f-ca4b51a80cb1 db1d92f0913d807711266a6226040020 { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor' } +C3N-04693.RNA-Seq.R1_L001.T C3N-04693 GBM RNA-Seq tumor CPT0293800009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R1_001.fastq.gz 5469084994 FASTQ R1_L001 unaligned CPTAC3 95e19f64-f558-4704-b020-3cc06287e7f4 ebc4a382c65532a43ce9ee0e2293f80d { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-04693.RNA-Seq.R2_L001.T C3N-04693 GBM RNA-Seq tumor CPT0293800009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R2_001.fastq.gz 6147478036 FASTQ R2_L001 unaligned CPTAC3 7144248c-c457-48a8-bd20-e742f014d9bd f527f436ba9c7a431eee4a2d0727cd91 { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-04693.RNA-Seq.transcriptome.T.hg38 C3N-04693 GBM RNA-Seq tumor CPT0293800009 03313b31-f1a5-4379-bad9-9e46eea470d6.rna_seq.transcriptome.gdc_realn.bam 15477885391 BAM transcriptome harmonized CPTAC3 96aeadbf-ce1d-471e-a984-b066d67d9b84 ffe13e00d08b739005602b073ff2d067 { 'aliquot_tag': 'ALQ_8d194c34', 'gdc_sample_type': 'Primary Tumor' } C3N-04693.WGS.N C3N-04693 GBM WGS blood_normal CPT0293830004 CPT0293830004.WholeGenome.RP-2158.bam 21452981251 BAM aligned CPTAC3 7c393eae-279f-43bc-abec-5f4e84caa34c 5c1d1dcaa658498d07c25ca230c99c73 { 'aliquot_tag': 'ALQ_b4084a59', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04693.WGS.N.hg38 C3N-04693 GBM WGS blood_normal CPT0293830004 b996ab8e-ae14-42ed-ac60-b74d932c0460_wgs_gdc_realn.bam 63795296473 BAM harmonized CPTAC3 de5ee410-fb28-490e-81a9-60d05e4039f8 cf9ca1f955a3d39f484b2b8c719ccdbe { 'aliquot_tag': 'ALQ_b4084a59', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04693.WGS.T C3N-04693 GBM WGS tumor CPT0293800006 CPT0293800006.WholeGenome.RP-2158.bam 29358675954 BAM aligned CPTAC3 3c2a3429-a00b-4aa5-958d-bdcadca1ac38 61683978f1356b0ec83cbd1ab98684ec { 'aliquot_tag': 'ALQ_1da651a5', 'gdc_sample_type': 'Primary Tumor' } @@ -38137,11 +40548,11 @@ C3N-04695.MethArray.Green.T C3N-04695 GBM Methylation Array tumor CPT0293870006 C3N-04695.MethArray.Red.T C3N-04695 GBM Methylation Array tumor CPT0293870006 204930630111_R07C01_Red.idat 13677885 IDAT Red NA CPTAC3 bb5c6094-2ff4-4b49-8acd-a64c53d38105 2f9361c00e031ed99a98c29eb65e3947 { 'aliquot_tag': 'ALQ_af868db5', 'gdc_sample_type': 'Primary Tumor' } C3N-04695.miRNA-Seq.T C3N-04695 GBM miRNA-Seq tumor CPT0293870009 201209_UNC32-K00270_0265_AHJ55WBBXY_GCCAAT_S31_L007_R1_001.unaln.bam 254636701 BAM unaligned CPTAC3 116a4933-a918-4b62-be94-f8dd406d55e0 2bad041d5acecccb2f27be5e41b4b947 { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor' } C3N-04695.miRNA-Seq.T.hg38 C3N-04695 GBM miRNA-Seq tumor CPT0293870009 8ffc0ec3-0cbc-45a3-bf2f-978b97a6cf9a_mirnaseq_gdc_realn.bam 278835217 BAM harmonized CPTAC3 b96ad40b-b6ee-425e-b039-0b7b5f79c219 3412bd76feaf0f516c65b36f468f00a4 { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor' } -C3N-04695.RNA-Seq.chimeric.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 d648ff08-14d2-4c31-ac7e-37f616277f63.rna_seq.chimeric.gdc_realn.bam 545842225 BAM chimeric harmonized CPTAC3 fa1e26d1-7a63-4b3f-a17a-e1947f9a6966 be9543401e2a9f315037fd2946dd4832 { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor' } -C3N-04695.RNA-Seq.genomic.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 d648ff08-14d2-4c31-ac7e-37f616277f63.rna_seq.genomic.gdc_realn.bam 9685136847 BAM genomic harmonized CPTAC3 c892103c-2215-46fb-8cb8-469ddcc483ca 79e29f7802cc9c44ce1120f7c803c38f { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor' } -C3N-04695.RNA-Seq.R1_L002.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R1_001.fastq.gz 4693950174 FASTQ R1_L002 unaligned CPTAC3 192aec81-2351-4e27-88b7-36549fbf6d8d 72a7715debc655f045322ddaa760a31c { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor' } -C3N-04695.RNA-Seq.R2_L002.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R2_001.fastq.gz 5315597387 FASTQ R2_L002 unaligned CPTAC3 37a18500-3aa6-42ad-99ed-e1c041194c48 147f923d871392c37cbf9babe53dbf9f { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor' } -C3N-04695.RNA-Seq.transcriptome.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 d648ff08-14d2-4c31-ac7e-37f616277f63.rna_seq.transcriptome.gdc_realn.bam 9780473207 BAM transcriptome harmonized CPTAC3 318149c7-6793-47c7-bc75-37ddc5ced76a 43328fa82df72d192004ece483f909f3 { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor' } +C3N-04695.RNA-Seq.chimeric.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.chimeric.gdc_realn.bam 545947210 BAM chimeric harmonized CPTAC3 e1ea7fc3-4615-4e8e-b377-e666128bf67e 1e0a7fe537acfed9e1f8b47d10300123 { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor' } +C3N-04695.RNA-Seq.genomic.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.genomic.gdc_realn.bam 9691045980 BAM genomic harmonized CPTAC3 2fb3d725-8f6c-477e-a9bf-b2e58ae5fa98 c4b001ed1db437200c385ceafac4237f { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor' } +C3N-04695.RNA-Seq.R1_L002.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R1_001.fastq.gz 4693950174 FASTQ R1_L002 unaligned CPTAC3 192aec81-2351-4e27-88b7-36549fbf6d8d 72a7715debc655f045322ddaa760a31c { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-04695.RNA-Seq.R2_L002.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R2_001.fastq.gz 5315597387 FASTQ R2_L002 unaligned CPTAC3 37a18500-3aa6-42ad-99ed-e1c041194c48 147f923d871392c37cbf9babe53dbf9f { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-04695.RNA-Seq.transcriptome.T.hg38 C3N-04695 GBM RNA-Seq tumor CPT0293870009 747955e9-73b8-4760-831a-aedcca1f388a.rna_seq.transcriptome.gdc_realn.bam 11250955216 BAM transcriptome harmonized CPTAC3 cf1e6599-68b5-4420-b24e-7da566bf9acd 1754110c08e54978c49b3823e4c41c26 { 'aliquot_tag': 'ALQ_3f399024', 'gdc_sample_type': 'Primary Tumor' } C3N-04695.WGS.N C3N-04695 GBM WGS blood_normal CPT0293890002 CPT0293890002.WholeGenome.RP-2158.bam 22732109080 BAM aligned CPTAC3 6adf632a-fedb-456f-aad9-67b5c4cd8a7a 829513d0bef0cdc6e691e191e7eccb84 { 'aliquot_tag': 'ALQ_17dbf7cd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04695.WGS.N.hg38 C3N-04695 GBM WGS blood_normal CPT0293890002 dc406b2d-e0c8-49bf-b1b1-7e1929833382_wgs_gdc_realn.bam 66383764365 BAM harmonized CPTAC3 fab7e8e1-714b-4798-9ef7-1612394e55d5 604d52502306f04af036456747113049 { 'aliquot_tag': 'ALQ_17dbf7cd', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04695.WGS.T C3N-04695 GBM WGS tumor CPT0293870006 CPT0293870006.WholeGenome.RP-2158.bam 27471116027 BAM aligned CPTAC3 6dd2b329-91e9-4246-ba46-b15996db89b0 0b1fcd14a9a7e467ea2bc27ff06adda0 { 'aliquot_tag': 'ALQ_af868db5', 'gdc_sample_type': 'Primary Tumor' } @@ -38158,16 +40569,16 @@ C3N-04701.miRNA-Seq.A C3N-04701 LSCC miRNA-Seq tissue_normal CPT0293910009 20032 C3N-04701.miRNA-Seq.A.hg38 C3N-04701 LSCC miRNA-Seq tissue_normal CPT0293910009 19a5f0a4-547c-44f3-bb29-9ea1a7da6e18_mirnaseq_gdc_realn.bam 264517897 BAM harmonized CPTAC3 f130baa5-9fa6-43f2-9a93-03c16aa58ce8 1fcc290a73e354a615777b127e3cbeca { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04701.miRNA-Seq.T C3N-04701 LSCC miRNA-Seq tumor CPT0293900009 200224_UNC31-K00269_0267_AHC722BBXY_CAGATC_S7_L008_R1_001.unaln.bam 222982001 BAM unaligned CPTAC3 b6e6e43a-7bcf-4366-b957-c2f084445703 be347253d6799a052f916aebabe5e5fe { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor' } C3N-04701.miRNA-Seq.T.hg38 C3N-04701 LSCC miRNA-Seq tumor CPT0293900009 4e931765-e13d-42d2-ab5a-6c2535bf7202_mirnaseq_gdc_realn.bam 242228306 BAM harmonized CPTAC3 b085f6cd-7cbb-4030-9071-44462b03cd5b e628d0e52ec171481f046e774aa3dc18 { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor' } -C3N-04701.RNA-Seq.chimeric.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 7d5d8c98-7f76-4d37-bcc7-6eb9cd5d5226.rna_seq.chimeric.gdc_realn.bam 72392004 BAM chimeric harmonized CPTAC3 d45fe06b-d31c-4732-a1d7-3831b4133cbe 30aa722c9c1784daabffe1b3ca61abef { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04701.RNA-Seq.chimeric.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 cd125eca-3fca-4a8d-b3bd-322f3a2af919.rna_seq.chimeric.gdc_realn.bam 44173507 BAM chimeric harmonized CPTAC3 1ea431ab-2004-4ac2-84ed-b953476a682d ea755d3f7f85b517467e9050c4ac343c { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor' } -C3N-04701.RNA-Seq.genomic.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 7d5d8c98-7f76-4d37-bcc7-6eb9cd5d5226.rna_seq.genomic.gdc_realn.bam 8983743273 BAM genomic harmonized CPTAC3 f3c8e41c-0ffe-4d5d-94f0-556d57b38684 291246453f45eb7a6304f4194a2eab6c { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04701.RNA-Seq.genomic.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 cd125eca-3fca-4a8d-b3bd-322f3a2af919.rna_seq.genomic.gdc_realn.bam 9357675414 BAM genomic harmonized CPTAC3 7f5f097f-5fe7-4eb2-abf2-d704183d446e fc4aaeb259846cd4add7a37cf5ade02c { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor' } -C3N-04701.RNA-Seq.R1_L002.T C3N-04701 LSCC RNA-Seq tumor CPT0293900009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L002_R1_001.fastq.gz 4667721275 FASTQ R1_L002 unaligned CPTAC3 57aa2d40-9195-48bf-b4a7-0b78a10f0d63 23558d866156b8caebc26d3d81327f8a { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor' } -C3N-04701.RNA-Seq.R1_L008.A C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCGATATC-ACACGAGT_S31_L008_R1_001.fastq.gz 4704619016 FASTQ R1_L008 unaligned CPTAC3 b03b01be-db81-4ec8-b893-b790fcf1e565 11f722aed074c49688c3b841acdf82a3 { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04701.RNA-Seq.R2_L002.T C3N-04701 LSCC RNA-Seq tumor CPT0293900009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L002_R2_001.fastq.gz 4981914719 FASTQ R2_L002 unaligned CPTAC3 5b256c5e-2b30-4b00-8625-fe4cbd0945ff ab036cbf86edd457647abdcb2f334780 { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor' } -C3N-04701.RNA-Seq.R2_L008.A C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCGATATC-ACACGAGT_S31_L008_R2_001.fastq.gz 4833254640 FASTQ R2_L008 unaligned CPTAC3 b5b589c7-bfd5-4bcd-ab33-1fdc83c57369 1f44389ee5686e091e2bd94020d26866 { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04701.RNA-Seq.transcriptome.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 7d5d8c98-7f76-4d37-bcc7-6eb9cd5d5226.rna_seq.transcriptome.gdc_realn.bam 10825563863 BAM transcriptome harmonized CPTAC3 596e339c-1f2b-4f16-82b6-b8492150d679 1a6d91be6e8969380fd488b39ff3ffe6 { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04701.RNA-Seq.transcriptome.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 cd125eca-3fca-4a8d-b3bd-322f3a2af919.rna_seq.transcriptome.gdc_realn.bam 11457903841 BAM transcriptome harmonized CPTAC3 18164e34-6359-40f4-a120-16df724bf728 1a7dcdfc8d47c03057e7cf693904c4e9 { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor' } +C3N-04701.RNA-Seq.chimeric.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 76f06fe9-dd6d-4d1a-a503-fee3f89334ba.rna_seq.chimeric.gdc_realn.bam 72376885 BAM chimeric harmonized CPTAC3 cf39f0eb-35e4-4bf6-ae94-c184a800da12 5dcae9a9f986c5029594736ed255900f { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04701.RNA-Seq.chimeric.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 00f5166b-1026-4eef-b86f-c317e6ac67c5.rna_seq.chimeric.gdc_realn.bam 44157595 BAM chimeric harmonized CPTAC3 3f773d9a-8ef6-4cd6-880b-000e871a7f6f b22c4d3558f79b32773dd0aaa5887413 { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor' } +C3N-04701.RNA-Seq.genomic.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 76f06fe9-dd6d-4d1a-a503-fee3f89334ba.rna_seq.genomic.gdc_realn.bam 8985496669 BAM genomic harmonized CPTAC3 e7fb4a2c-cb17-448b-850e-87f082f80bc5 8a67b306ea3ad4eb5b6b13b54d28414c { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04701.RNA-Seq.genomic.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 00f5166b-1026-4eef-b86f-c317e6ac67c5.rna_seq.genomic.gdc_realn.bam 9359265956 BAM genomic harmonized CPTAC3 75472f2f-b05c-435f-8bd1-34a1c6659d95 5a48bad70f7ea2522a6468576231891f { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor' } +C3N-04701.RNA-Seq.R1_L002.T C3N-04701 LSCC RNA-Seq tumor CPT0293900009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L002_R1_001.fastq.gz 4667721275 FASTQ R1_L002 unaligned CPTAC3 57aa2d40-9195-48bf-b4a7-0b78a10f0d63 23558d866156b8caebc26d3d81327f8a { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-04701.RNA-Seq.R1_L008.A C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCGATATC-ACACGAGT_S31_L008_R1_001.fastq.gz 4704619016 FASTQ R1_L008 unaligned CPTAC3 b03b01be-db81-4ec8-b893-b790fcf1e565 11f722aed074c49688c3b841acdf82a3 { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L008' } +C3N-04701.RNA-Seq.R2_L002.T C3N-04701 LSCC RNA-Seq tumor CPT0293900009 200505_UNC32-K00270_0245_AHH5FVBBXY_CAAGCTAG-ACATAGCG_S7_L002_R2_001.fastq.gz 4981914719 FASTQ R2_L002 unaligned CPTAC3 5b256c5e-2b30-4b00-8625-fe4cbd0945ff ab036cbf86edd457647abdcb2f334780 { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-04701.RNA-Seq.R2_L008.A C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCGATATC-ACACGAGT_S31_L008_R2_001.fastq.gz 4833254640 FASTQ R2_L008 unaligned CPTAC3 b5b589c7-bfd5-4bcd-ab33-1fdc83c57369 1f44389ee5686e091e2bd94020d26866 { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L008' } +C3N-04701.RNA-Seq.transcriptome.A.hg38 C3N-04701 LSCC RNA-Seq tissue_normal CPT0293910009 76f06fe9-dd6d-4d1a-a503-fee3f89334ba.rna_seq.transcriptome.gdc_realn.bam 12306895545 BAM transcriptome harmonized CPTAC3 ee570fa8-55a6-46bd-ab59-edae8b88eb19 4196028eba7457d7dea06abe35598149 { 'aliquot_tag': 'ALQ_7b25b621', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04701.RNA-Seq.transcriptome.T.hg38 C3N-04701 LSCC RNA-Seq tumor CPT0293900009 00f5166b-1026-4eef-b86f-c317e6ac67c5.rna_seq.transcriptome.gdc_realn.bam 12964416634 BAM transcriptome harmonized CPTAC3 8fda6a29-e85e-4d48-b93c-4c24cd8160a8 b61ca60491105ea99aa1dd249b4f4f08 { 'aliquot_tag': 'ALQ_46459f91', 'gdc_sample_type': 'Primary Tumor' } C3N-04701.WGS.N C3N-04701 LSCC WGS blood_normal CPT0293940002 CPT0293940002.WholeGenome.RP-2158.bam 26367282623 BAM aligned CPTAC3 a5aff2c6-4bad-4e55-a2ae-95b3a1b565ce 2503592f22bd4e4a6c9eb2e7cbf6d0e4 { 'aliquot_tag': 'ALQ_2417e0d9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04701.WGS.N.hg38 C3N-04701 LSCC WGS blood_normal CPT0293940002 dea222cc-4710-482a-b1b9-12cfc82f8bb2_wgs_gdc_realn.bam 78569442278 BAM harmonized CPTAC3 ff0ab924-09a0-4169-af5a-304760c894ed 523eac379f87f7c22d7c3d14839a504a { 'aliquot_tag': 'ALQ_2417e0d9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04701.WGS.T C3N-04701 LSCC WGS tumor CPT0293900006 CPT0293900006.WholeGenome.RP-2158.bam 20944610111 BAM aligned CPTAC3 ee31857c-0abf-46b9-a02d-8f2744756492 44cbe31ff5815cab8cfdae4fb8c76e30 { 'aliquot_tag': 'ALQ_d6fa8200', 'gdc_sample_type': 'Primary Tumor' } @@ -38178,17 +40589,20 @@ C3N-04701.WXS.N C3N-04701 LSCC WXS blood_normal CPT0293940002 CPT0293940002.Whol C3N-04701.WXS.N.hg38 C3N-04701 LSCC WXS blood_normal CPT0293940002 dea222cc-4710-482a-b1b9-12cfc82f8bb2_wxs_gdc_realn.bam 32040419742 BAM harmonized CPTAC3 1c58affb-da1d-4b10-9c6a-6803194220bb 7615fd53eed6c425f5862a4b637b16bb { 'aliquot_tag': 'ALQ_2417e0d9', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04701.WXS.T C3N-04701 LSCC WXS tumor CPT0293900006 CPT0293900006.WholeExome.RP-1303.bam 19440348653 BAM aligned CPTAC3 8f8f06d4-9072-4a56-93af-f0e315413f67 8393e5004d89e59c0f3d1f83a776081f { 'aliquot_tag': 'ALQ_d6fa8200', 'gdc_sample_type': 'Primary Tumor' } C3N-04701.WXS.T.hg38 C3N-04701 LSCC WXS tumor CPT0293900006 a5c1bd98-d6d5-4c56-9678-10c596b60c35_wxs_gdc_realn.bam 27388540159 BAM harmonized CPTAC3 e6c146b0-db16-45a0-90ef-d5755873522c c26811f5f908694e3f51e255457ca0b5 { 'aliquot_tag': 'ALQ_d6fa8200', 'gdc_sample_type': 'Primary Tumor' } -C3N-04708.RNA-Seq.R1_.T C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 20210714_P1_G7_WB7988_plate1_S78_R1_001.fastq.gz 5314900702 FASTQ R1_ unaligned CPTAC3 bcbeeb17-f994-4a13-b86e-162d6b0c4145 e9696d462410148b45b5f26a0b08a87f { 'aliquot_tag': 'ALQ_8e9b46e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-04708.RNA-Seq.R2_.T C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 20210714_P1_G7_WB7988_plate1_S78_R2_001.fastq.gz 5524224361 FASTQ R2_ unaligned CPTAC3 aef4958a-80ca-46c1-aeb4-942f06d6550b e244ef801796022c3e18ef2a0ff020cd { 'aliquot_tag': 'ALQ_8e9b46e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04708.RNA-Seq.chimeric.T.hg38 C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 44d99543-9385-414d-b0f3-44a72d78547d.rna_seq.chimeric.gdc_realn.bam 150549078 BAM chimeric harmonized CPTAC3 e4dcdaa1-b79b-4e22-8553-b69009749a4a d7635a73ec9d7ee474ea1c325913e658 { 'aliquot_tag': 'ALQ_8e9b46e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04708.RNA-Seq.genomic.T.hg38 C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 44d99543-9385-414d-b0f3-44a72d78547d.rna_seq.genomic.gdc_realn.bam 8876759047 BAM genomic harmonized CPTAC3 f9fc5141-0536-4310-ac30-013629d2eee5 fe45f02851dca62f3945238867e02739 { 'aliquot_tag': 'ALQ_8e9b46e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-04708.RNA-Seq.T C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 20210714_P1_G7_WB7988_plate1_S78_R1_001.fastq.gz 5314900702 FASTQ unaligned CPTAC3 bcbeeb17-f994-4a13-b86e-162d6b0c4145 e9696d462410148b45b5f26a0b08a87f +C3N-04708.RNA-Seq.T C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 20210714_P1_G7_WB7988_plate1_S78_R2_001.fastq.gz 5524224361 FASTQ unaligned CPTAC3 aef4958a-80ca-46c1-aeb4-942f06d6550b e244ef801796022c3e18ef2a0ff020cd +C3N-04708.RNA-Seq.transcriptome.T.hg38 C3N-04708 HNSCC RNA-Seq tumor CPT0354670001 44d99543-9385-414d-b0f3-44a72d78547d.rna_seq.transcriptome.gdc_realn.bam 5804266018 BAM transcriptome harmonized CPTAC3 fb7a30d2-2dc2-435a-985f-e4c114f2f687 b8b31d45ddbef40b807a49c27243ffed { 'aliquot_tag': 'ALQ_8e9b46e4', 'gdc_sample_type': 'Primary Tumor' } C3N-04713.MethArray.Green.T C3N-04713 LSCC Methylation Array tumor CPT0313120006 204367490029_R05C01_Grn.idat 13677885 IDAT Green NA CPTAC3 1bd8fef2-ccc4-4c6e-8d4b-04ad094720a3 e554ef86789865be10aacc7e9b5dafae { 'aliquot_tag': 'ALQ_84f75cfb', 'gdc_sample_type': 'Primary Tumor' } C3N-04713.MethArray.Red.T C3N-04713 LSCC Methylation Array tumor CPT0313120006 204367490029_R05C01_Red.idat 13677885 IDAT Red NA CPTAC3 1dbe1684-18a0-4adc-ae51-e4cde5c0571c 511a036ef1935f0ed46ed5e836ce8cf5 { 'aliquot_tag': 'ALQ_84f75cfb', 'gdc_sample_type': 'Primary Tumor' } C3N-04713.miRNA-Seq.T C3N-04713 LSCC miRNA-Seq tumor CPT0313120009 200224_UNC31-K00269_0267_AHC722BBXY_CTTGTA_S12_L008_R1_001.unaln.bam 230288131 BAM unaligned CPTAC3 ec558bf0-e1bc-4bcc-9b1c-bc4a92624846 f68672e2c21ca79c6a5938aa404ab012 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor' } C3N-04713.miRNA-Seq.T.hg38 C3N-04713 LSCC miRNA-Seq tumor CPT0313120009 9894658b-47b8-4e37-85af-90fd8f09d0fa_mirnaseq_gdc_realn.bam 264922655 BAM harmonized CPTAC3 a68a15f4-733e-48d1-ad81-d21e9c20ff95 34adab5e5b45e0e6c3eadcc6d429ce41 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor' } -C3N-04713.RNA-Seq.chimeric.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 434d0b9c-71ef-4b2b-a922-984c33b42bd2.rna_seq.chimeric.gdc_realn.bam 25340028 BAM chimeric harmonized CPTAC3 aba0cb07-df34-420f-8e53-2d8a36822dee 7d7f8f659e170f1cbea2d5a7b8dac780 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor' } -C3N-04713.RNA-Seq.genomic.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 434d0b9c-71ef-4b2b-a922-984c33b42bd2.rna_seq.genomic.gdc_realn.bam 6507100217 BAM genomic harmonized CPTAC3 1f5dd187-ffe8-4404-b486-db0960cc1da4 7eec8e34af78dbe1acaf68a1605312f2 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor' } -C3N-04713.RNA-Seq.R1_L003.T C3N-04713 LSCC RNA-Seq tumor CPT0313120009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L003_R1_001.fastq.gz 3134777188 FASTQ R1_L003 unaligned CPTAC3 43d99717-abff-4560-9f61-c08b6ad51e3c a2fd337c2f186558dba29c41bcbd3c21 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor' } -C3N-04713.RNA-Seq.R2_L003.T C3N-04713 LSCC RNA-Seq tumor CPT0313120009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L003_R2_001.fastq.gz 3376812959 FASTQ R2_L003 unaligned CPTAC3 8e7a02ce-e64b-4058-89be-1e8bffab56b3 5bf32b14eb8341d3dcef56d5a9a18d15 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor' } -C3N-04713.RNA-Seq.transcriptome.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 434d0b9c-71ef-4b2b-a922-984c33b42bd2.rna_seq.transcriptome.gdc_realn.bam 7478651846 BAM transcriptome harmonized CPTAC3 96946050-a12b-44d7-9a89-c641c1682ec6 2a459386abd67cbb28ce36ce2320af82 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor' } +C3N-04713.RNA-Seq.chimeric.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 01e6b859-7437-4901-a1ce-2b3ff75ed603.rna_seq.chimeric.gdc_realn.bam 25349719 BAM chimeric harmonized CPTAC3 f9126ebf-5827-4cb3-9efe-51554dbeec21 6d0de03df135d1cbb282fb2a0d4f2891 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor' } +C3N-04713.RNA-Seq.genomic.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 01e6b859-7437-4901-a1ce-2b3ff75ed603.rna_seq.genomic.gdc_realn.bam 6509753911 BAM genomic harmonized CPTAC3 375a34f0-bf33-4acb-8a96-7ebad8739261 460fad573fbb4959c61b0d1034d04d16 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor' } +C3N-04713.RNA-Seq.R1_L003.T C3N-04713 LSCC RNA-Seq tumor CPT0313120009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L003_R1_001.fastq.gz 3134777188 FASTQ R1_L003 unaligned CPTAC3 43d99717-abff-4560-9f61-c08b6ad51e3c a2fd337c2f186558dba29c41bcbd3c21 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-04713.RNA-Seq.R2_L003.T C3N-04713 LSCC RNA-Seq tumor CPT0313120009 200505_UNC32-K00270_0245_AHH5FVBBXY_CTCTCGTC-TATAACCT_S12_L003_R2_001.fastq.gz 3376812959 FASTQ R2_L003 unaligned CPTAC3 8e7a02ce-e64b-4058-89be-1e8bffab56b3 5bf32b14eb8341d3dcef56d5a9a18d15 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-04713.RNA-Seq.transcriptome.T.hg38 C3N-04713 LSCC RNA-Seq tumor CPT0313120009 01e6b859-7437-4901-a1ce-2b3ff75ed603.rna_seq.transcriptome.gdc_realn.bam 8337734649 BAM transcriptome harmonized CPTAC3 ee1f334d-221b-4e5d-a6a0-66bd14921404 f65f1a3002677cf0acc6e7971d8b42f5 { 'aliquot_tag': 'ALQ_1448416a', 'gdc_sample_type': 'Primary Tumor' } C3N-04713.WGS.N C3N-04713 LSCC WGS blood_normal CPT0313130002 CPT0313130002.WholeGenome.RP-2158.bam 23276517655 BAM aligned CPTAC3 7a2bb22e-a421-459d-ac87-babf1cbd4c70 8498886175fdaf22c554ea90796b9c7c { 'aliquot_tag': 'ALQ_befab152', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04713.WGS.N.hg38 C3N-04713 LSCC WGS blood_normal CPT0313130002 abcb9f24-8fc3-4847-81c8-9ba7a653708b_wgs_gdc_realn.bam 67710228475 BAM harmonized CPTAC3 fe118dcc-3a00-4479-a4cb-afe06060bf5f 1bcb0fddf572e26d10c14e9a6ff632da { 'aliquot_tag': 'ALQ_befab152', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04713.WGS.T C3N-04713 LSCC WGS tumor CPT0313120006 CPT0313120006.WholeGenome.RP-2158.bam 23404441371 BAM aligned CPTAC3 0d21369d-2dc9-4a55-99d8-8492870d4d99 fcf5bcfae633043b8ac059e0791f0a84 { 'aliquot_tag': 'ALQ_84f75cfb', 'gdc_sample_type': 'Primary Tumor' } @@ -38205,16 +40619,16 @@ C3N-04944.miRNA-Seq.A C3N-04944 LSCC miRNA-Seq tissue_normal CPT0333940008 20120 C3N-04944.miRNA-Seq.A.hg38 C3N-04944 LSCC miRNA-Seq tissue_normal CPT0333940008 92129990-191d-467a-a8f2-7a04945dac03_mirnaseq_gdc_realn.bam 291791665 BAM harmonized CPTAC3 824d9621-2178-40ee-b94d-80abf1151377 16d0d750c7363e74ba0be36a3743d1dc { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04944.miRNA-Seq.T C3N-04944 LSCC miRNA-Seq tumor CPT0333920009 201209_UNC32-K00270_0265_AHJ55WBBXY_GAGTGG_S13_L006_R1_001.unaln.bam 288371914 BAM unaligned CPTAC3 634bdeb0-031c-47e5-b8be-213580b45fe2 6fa4fdfb2ba4fb937bdfc01475878621 { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor' } C3N-04944.miRNA-Seq.T.hg38 C3N-04944 LSCC miRNA-Seq tumor CPT0333920009 02bcbfb0-e7d7-4baa-9bd4-8c7dbf149b9d_mirnaseq_gdc_realn.bam 315009718 BAM harmonized CPTAC3 49a27b8c-733b-4566-8d1b-c130b4c8fb05 f296131448e6df21456ca488d62a9de1 { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor' } -C3N-04944.RNA-Seq.chimeric.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 67f56a65-fc7f-4a65-8423-207471b7254b.rna_seq.chimeric.gdc_realn.bam 330301814 BAM chimeric harmonized CPTAC3 c35e8365-c5e6-4999-b645-076ae75c4f0c b9e8c16346296d9e0b71d87361fed88b { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04944.RNA-Seq.chimeric.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 46c88849-3ba7-4857-8369-fe6bf3bedccd.rna_seq.chimeric.gdc_realn.bam 186732670 BAM chimeric harmonized CPTAC3 b293a60d-728e-49f6-9df3-e968dadf4855 fe0e5537a74016a24f223f58903b52dc { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor' } -C3N-04944.RNA-Seq.genomic.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 67f56a65-fc7f-4a65-8423-207471b7254b.rna_seq.genomic.gdc_realn.bam 7910913635 BAM genomic harmonized CPTAC3 662e7773-57fb-496f-a81b-ae55d1b07181 75bed4527aff8dc28077e4d06d426c0b { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04944.RNA-Seq.genomic.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 46c88849-3ba7-4857-8369-fe6bf3bedccd.rna_seq.genomic.gdc_realn.bam 7613532927 BAM genomic harmonized CPTAC3 f1705b6b-dc27-41d2-9589-7e738fe9172b 44b4c74e43913fd8e03d2d594c5b37b5 { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor' } -C3N-04944.RNA-Seq.R1_L004.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R1_001.fastq.gz 3962578034 FASTQ R1_L004 unaligned CPTAC3 c9343469-52cf-4565-80db-90ebdeaa13b4 d6dfa4afa1d3f1d39beedc64d9f9c26f { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04944.RNA-Seq.R1_L005.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R1_001.fastq.gz 4003847490 FASTQ R1_L005 unaligned CPTAC3 ebd08a10-5fbf-4821-8d0e-c4e5579df561 ab5d738f8ab8887cd8d4d8a9a89ae465 { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor' } -C3N-04944.RNA-Seq.R2_L004.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R2_001.fastq.gz 4355974170 FASTQ R2_L004 unaligned CPTAC3 2e0be108-dd9a-4c54-818c-00de20ce1c66 99954d8bbbff51ddd79111623f26078b { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04944.RNA-Seq.R2_L005.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R2_001.fastq.gz 4301679556 FASTQ R2_L005 unaligned CPTAC3 827f415a-03aa-471c-91a4-82c5a6cf0e1d 83c50218676650d521be00e4ea3e5f4f { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor' } -C3N-04944.RNA-Seq.transcriptome.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 67f56a65-fc7f-4a65-8423-207471b7254b.rna_seq.transcriptome.gdc_realn.bam 8392092405 BAM transcriptome harmonized CPTAC3 43724f64-0163-4e2a-805f-ff1c5d81c255 8a653996b7062e3f8c559ca5afbd26d2 { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04944.RNA-Seq.transcriptome.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 46c88849-3ba7-4857-8369-fe6bf3bedccd.rna_seq.transcriptome.gdc_realn.bam 10793606761 BAM transcriptome harmonized CPTAC3 686e56ce-d0f0-4dad-a0a8-1c969ecfcf6c 2d11ae61a863a41c080046d34802bd95 { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor' } +C3N-04944.RNA-Seq.chimeric.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 b06f1ea9-9c90-42b7-9fd7-d6027a085cc2.rna_seq.chimeric.gdc_realn.bam 330307505 BAM chimeric harmonized CPTAC3 e7c9fc22-6f09-4441-8c93-a72625450230 efc84e3056af2914c1e6cb60d4c1bb2a { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04944.RNA-Seq.chimeric.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 c573e93e-2c4e-434b-9b20-076e392691a8.rna_seq.chimeric.gdc_realn.bam 186745784 BAM chimeric harmonized CPTAC3 98777754-78be-4a23-a6ab-fcdab7d11cd3 1be83dcde60c351479455f4aad8e03e2 { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor' } +C3N-04944.RNA-Seq.genomic.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 b06f1ea9-9c90-42b7-9fd7-d6027a085cc2.rna_seq.genomic.gdc_realn.bam 7917656092 BAM genomic harmonized CPTAC3 0350165c-1e00-4eda-ac7f-f24e48af7f94 50d9b2bf39722abb060884824ecd8f3a { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04944.RNA-Seq.genomic.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 c573e93e-2c4e-434b-9b20-076e392691a8.rna_seq.genomic.gdc_realn.bam 7620852888 BAM genomic harmonized CPTAC3 f5f864e5-d29b-43f3-86de-03c3cb8588ea 0d689f10b685d5152f805f9cffe17453 { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor' } +C3N-04944.RNA-Seq.R1_L004.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R1_001.fastq.gz 3962578034 FASTQ R1_L004 unaligned CPTAC3 c9343469-52cf-4565-80db-90ebdeaa13b4 d6dfa4afa1d3f1d39beedc64d9f9c26f { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-04944.RNA-Seq.R1_L005.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R1_001.fastq.gz 4003847490 FASTQ R1_L005 unaligned CPTAC3 ebd08a10-5fbf-4821-8d0e-c4e5579df561 ab5d738f8ab8887cd8d4d8a9a89ae465 { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-04944.RNA-Seq.R2_L004.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R2_001.fastq.gz 4355974170 FASTQ R2_L004 unaligned CPTAC3 2e0be108-dd9a-4c54-818c-00de20ce1c66 99954d8bbbff51ddd79111623f26078b { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-04944.RNA-Seq.R2_L005.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R2_001.fastq.gz 4301679556 FASTQ R2_L005 unaligned CPTAC3 827f415a-03aa-471c-91a4-82c5a6cf0e1d 83c50218676650d521be00e4ea3e5f4f { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-04944.RNA-Seq.transcriptome.A.hg38 C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 b06f1ea9-9c90-42b7-9fd7-d6027a085cc2.rna_seq.transcriptome.gdc_realn.bam 9580091527 BAM transcriptome harmonized CPTAC3 b24ad7f9-e9ce-4b42-be7a-b353348b5d76 9422c824973bd76b3d2760ce8c9e4e9a { 'aliquot_tag': 'ALQ_4279014c', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04944.RNA-Seq.transcriptome.T.hg38 C3N-04944 LSCC RNA-Seq tumor CPT0333920009 c573e93e-2c4e-434b-9b20-076e392691a8.rna_seq.transcriptome.gdc_realn.bam 12366800359 BAM transcriptome harmonized CPTAC3 62843aa8-09e7-495a-9295-aa6e2d6f886a 5009c244c8d338ba0dad41db9b659907 { 'aliquot_tag': 'ALQ_ba3ec47a', 'gdc_sample_type': 'Primary Tumor' } C3N-04944.WGS.N C3N-04944 LSCC WGS blood_normal CPT0334010002 CPT0334010002.WholeGenome.RP-2158.bam 24693379292 BAM aligned CPTAC3 38226f1f-13be-4604-b711-f7a39e5e11c8 8d82d28cc92d6df87c8ef6ed679cd9e2 { 'aliquot_tag': 'ALQ_88e40864', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04944.WGS.N.hg38 C3N-04944 LSCC WGS blood_normal CPT0334010002 b82c5fe0-411c-4b2d-917b-6d67c4c6d750_wgs_gdc_realn.bam 74386232386 BAM harmonized CPTAC3 5e61d33c-775d-485a-8eef-100b9d973938 ae0ff94e6ad5504f67fe853b06737e06 { 'aliquot_tag': 'ALQ_88e40864', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04944.WGS.T C3N-04944 LSCC WGS tumor CPT0333920006 CPT0333920006.WholeGenome.RP-2158.bam 22296538949 BAM aligned CPTAC3 fe21c720-f9ff-4562-9481-e327cacccfc5 a7a26d400473ad8051ca557dcb35619e { 'aliquot_tag': 'ALQ_2a81d9eb', 'gdc_sample_type': 'Primary Tumor' } @@ -38233,16 +40647,16 @@ C3N-04982.miRNA-Seq.A C3N-04982 LSCC miRNA-Seq tissue_normal CPT0334340009 20120 C3N-04982.miRNA-Seq.A.hg38 C3N-04982 LSCC miRNA-Seq tissue_normal CPT0334340009 fc53e5e5-3c7a-4a91-a4ac-3a31e88ed9a4_mirnaseq_gdc_realn.bam 244576993 BAM harmonized CPTAC3 bf3cf179-0833-4f1c-ae74-8f45c22bc8f8 cc7cd2c7906dd9eb37482d04303bc0f2 { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-04982.miRNA-Seq.T C3N-04982 LSCC miRNA-Seq tumor CPT0334320009 201209_UNC32-K00270_0265_AHJ55WBBXY_GGTAGC_S14_L006_R1_001.unaln.bam 307441852 BAM unaligned CPTAC3 9b16e7a3-ef9f-4349-a9bc-30a4ac66a3a3 7ef9eab7e7f7731a3c2dca49bd911e22 { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor' } C3N-04982.miRNA-Seq.T.hg38 C3N-04982 LSCC miRNA-Seq tumor CPT0334320009 9072b24d-8a42-464e-9d45-b908cb718eed_mirnaseq_gdc_realn.bam 347790561 BAM harmonized CPTAC3 9e9590b4-152a-4943-8b36-6b9e23872e60 2cabc753dfbf1d5d344d4627b2fa4ace { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor' } -C3N-04982.RNA-Seq.chimeric.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 43659df3-0686-4caf-8bc1-8f5b116e5b1b.rna_seq.chimeric.gdc_realn.bam 386695884 BAM chimeric harmonized CPTAC3 8165d30d-0267-4a93-8985-14681e911abf ecf893017a14a9fbef5e19686a3c72c9 { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04982.RNA-Seq.chimeric.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 c16e6151-c879-4357-801c-9de63fb9b4e9.rna_seq.chimeric.gdc_realn.bam 143138338 BAM chimeric harmonized CPTAC3 9d66823f-72de-40c9-920d-1882ce852bbd e17f01d5cc29dc963a291688546d5784 { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor' } -C3N-04982.RNA-Seq.genomic.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 43659df3-0686-4caf-8bc1-8f5b116e5b1b.rna_seq.genomic.gdc_realn.bam 9573773385 BAM genomic harmonized CPTAC3 1651a4c6-ac35-4fbb-b815-82872fa31d0e f25b51f00435ed263aac91a10bb9d311 { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04982.RNA-Seq.genomic.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 c16e6151-c879-4357-801c-9de63fb9b4e9.rna_seq.genomic.gdc_realn.bam 5890418564 BAM genomic harmonized CPTAC3 645ffda0-0230-43e1-908e-6d4f83fc6991 5194b2c2db7efbb9d34ffb1a3d7500c6 { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor' } -C3N-04982.RNA-Seq.R1_L002.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 4757949761 FASTQ R1_L002 unaligned CPTAC3 60b48130-b657-492c-9839-2a8236f5b752 cd413147711efc8cc25a401e3a71504e { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04982.RNA-Seq.R1_L005.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3026911232 FASTQ R1_L005 unaligned CPTAC3 8ca5fa21-48e5-4126-a630-8d5d067831e7 14da63ac1a7f18357d25a1410aaf7d12 { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor' } -C3N-04982.RNA-Seq.R2_L002.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 5297286576 FASTQ R2_L002 unaligned CPTAC3 9b338fa6-70b4-4384-a81e-302d3d66da03 d2d9b88d8064446462e8166df0fe62b3 { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04982.RNA-Seq.R2_L005.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3308248274 FASTQ R2_L005 unaligned CPTAC3 5ad5ffec-1888-46b6-9b5c-c9b84c406aa9 7a3a4e2ea80c5e2f48867a477d8853bc { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor' } -C3N-04982.RNA-Seq.transcriptome.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 43659df3-0686-4caf-8bc1-8f5b116e5b1b.rna_seq.transcriptome.gdc_realn.bam 10222250322 BAM transcriptome harmonized CPTAC3 0e1863be-29ec-41c6-a621-3c3f6249a340 5c19578e8b894f10938f3bb75dd49052 { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-04982.RNA-Seq.transcriptome.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 c16e6151-c879-4357-801c-9de63fb9b4e9.rna_seq.transcriptome.gdc_realn.bam 8083905836 BAM transcriptome harmonized CPTAC3 54717ef9-72e4-42e9-bc23-bcb4f049a3d9 c641f60bbde0abaf5e7291d3996d50a9 { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor' } +C3N-04982.RNA-Seq.chimeric.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 1bc35a2f-b77e-4177-a9ed-d3039d216957.rna_seq.chimeric.gdc_realn.bam 386692119 BAM chimeric harmonized CPTAC3 f6a1f257-a7b4-4efe-8ab6-58ff36a06621 bbf65a62107049da3bc2a8b32f811c69 { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04982.RNA-Seq.chimeric.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 153bc73d-3197-4f7a-a83a-fad42b16aff4.rna_seq.chimeric.gdc_realn.bam 143124640 BAM chimeric harmonized CPTAC3 68700fde-a670-4dce-bf54-c9fb2d0dbef0 83e7ad53b0bb23df06bcde6ed98235e5 { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor' } +C3N-04982.RNA-Seq.genomic.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 1bc35a2f-b77e-4177-a9ed-d3039d216957.rna_seq.genomic.gdc_realn.bam 9581158464 BAM genomic harmonized CPTAC3 f745803a-bf46-4597-91cb-ec8623157ccd 1b3805da33c9954ca14c1dbcf9a9b013 { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04982.RNA-Seq.genomic.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 153bc73d-3197-4f7a-a83a-fad42b16aff4.rna_seq.genomic.gdc_realn.bam 5896144523 BAM genomic harmonized CPTAC3 3e58610e-b1ab-4c22-a2fe-b84c003cbe9a c0d9398541484cbe39134b63c276b132 { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor' } +C3N-04982.RNA-Seq.R1_L002.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R1_001.fastq.gz 4757949761 FASTQ R1_L002 unaligned CPTAC3 60b48130-b657-492c-9839-2a8236f5b752 cd413147711efc8cc25a401e3a71504e { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-04982.RNA-Seq.R1_L005.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3026911232 FASTQ R1_L005 unaligned CPTAC3 8ca5fa21-48e5-4126-a630-8d5d067831e7 14da63ac1a7f18357d25a1410aaf7d12 { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-04982.RNA-Seq.R2_L002.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 5297286576 FASTQ R2_L002 unaligned CPTAC3 9b338fa6-70b4-4384-a81e-302d3d66da03 d2d9b88d8064446462e8166df0fe62b3 { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-04982.RNA-Seq.R2_L005.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3308248274 FASTQ R2_L005 unaligned CPTAC3 5ad5ffec-1888-46b6-9b5c-c9b84c406aa9 7a3a4e2ea80c5e2f48867a477d8853bc { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-04982.RNA-Seq.transcriptome.A.hg38 C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 1bc35a2f-b77e-4177-a9ed-d3039d216957.rna_seq.transcriptome.gdc_realn.bam 11622572154 BAM transcriptome harmonized CPTAC3 f5595dea-7b3f-450f-8dde-3fb286778235 99f64b749e5c06c5294d1cc8fb26eae9 { 'aliquot_tag': 'ALQ_51422c32', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-04982.RNA-Seq.transcriptome.T.hg38 C3N-04982 LSCC RNA-Seq tumor CPT0334320009 153bc73d-3197-4f7a-a83a-fad42b16aff4.rna_seq.transcriptome.gdc_realn.bam 9246187410 BAM transcriptome harmonized CPTAC3 c4a21c49-12f1-496b-8dfc-a2d56536bca1 a4d7e8d3246274a2a5ab37ca91d7ec8f { 'aliquot_tag': 'ALQ_de02d992', 'gdc_sample_type': 'Primary Tumor' } C3N-04982.WGS.N C3N-04982 LSCC WGS blood_normal CPT0334410002 CPT0334410002.WholeGenome.RP-2158.bam 24182065112 BAM aligned CPTAC3 08fa0a40-cbfe-42d6-8b88-e17c4b75d461 f077b3b5231e04b08d449bb798b37058 { 'aliquot_tag': 'ALQ_13754a72', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04982.WGS.N.hg38 C3N-04982 LSCC WGS blood_normal CPT0334410002 b7d87f7b-30be-4cde-a718-3d1eff3a47e2_wgs_gdc_realn.bam 72893984984 BAM harmonized CPTAC3 4ba0591d-3c73-4e01-99e4-7f123807a869 dc6f67b5593105d0d3bb9919843c2e67 { 'aliquot_tag': 'ALQ_13754a72', 'gdc_sample_type': 'Blood Derived Normal' } C3N-04982.WGS.T C3N-04982 LSCC WGS tumor CPT0334320006 CPT0334320006.WholeGenome.RP-2158.bam 26185475216 BAM aligned CPTAC3 b2cc65c4-7c17-43c9-9c61-0f46e6ca171f 2ddf4706a64c57df05eb7c9348ab1050 { 'aliquot_tag': 'ALQ_4ebdc403', 'gdc_sample_type': 'Primary Tumor' } @@ -38257,11 +40671,11 @@ C3N-05039.MethArray.Green.T C3N-05039 GBM Methylation Array tumor CPT0375550007 C3N-05039.MethArray.Red.T C3N-05039 GBM Methylation Array tumor CPT0375550007 205555380179_R08C01_Red.idat 13677960 IDAT Red NA CPTAC3 b1dab8f3-b85c-4582-a2f8-cd872fd00719 656a7312aebdb2491cc1e26a46887cd6 { 'aliquot_tag': 'ALQ_7ffeced6', 'gdc_sample_type': 'Primary Tumor' } C3N-05039.miRNA-Seq.T C3N-05039 GBM miRNA-Seq tumor CPT0375550010 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTGAT_S1_L006_R1_001.unaln.bam 339916115 BAM unaligned CPTAC3 216cd2e0-5dd6-45e7-a80b-229e2904b2b5 5e90186684cd07c0f67c25f6e35794a7 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor' } C3N-05039.miRNA-Seq.T.hg38 C3N-05039 GBM miRNA-Seq tumor CPT0375550010 9b54f050-596d-4330-a614-d4114efbc541_mirnaseq_gdc_realn.bam 368781524 BAM harmonized CPTAC3 83cb7915-658a-43ea-8a36-9282a80da07a f466bcb01db3086432a8bd31c48604a9 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor' } -C3N-05039.RNA-Seq.chimeric.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 9f390cac-b07c-4e6c-8707-1e0576ea8ef7.rna_seq.chimeric.gdc_realn.bam 318750367 BAM chimeric harmonized CPTAC3 4845134d-a149-45ca-a832-069806bfebf5 6c81162c193947918f5854c6701ecbf5 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor' } -C3N-05039.RNA-Seq.genomic.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 9f390cac-b07c-4e6c-8707-1e0576ea8ef7.rna_seq.genomic.gdc_realn.bam 8258799612 BAM genomic harmonized CPTAC3 d89fee5c-6a24-4d3d-9c62-6f144847b5b4 f14e4949ebe9dca908fdaa67b8307173 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor' } -C3N-05039.RNA-Seq.R1_L005.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 4115334516 FASTQ R1_L005 unaligned CPTAC3 6ab25656-a131-45dd-8109-b25ff504557b 217e7c4eb1e1aec3d0823ff9fadd0323 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor' } -C3N-05039.RNA-Seq.R2_L005.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4446311730 FASTQ R2_L005 unaligned CPTAC3 65389fb7-97ce-4735-bc64-6092b9173a2a 21cc7ed3109046088483706b8b9ac3d7 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor' } -C3N-05039.RNA-Seq.transcriptome.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 9f390cac-b07c-4e6c-8707-1e0576ea8ef7.rna_seq.transcriptome.gdc_realn.bam 10911307777 BAM transcriptome harmonized CPTAC3 2d9649a1-7f4a-41d4-9b83-f42cab6928cb 0b8d6102aa23bf9e3fb98940d2332a02 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor' } +C3N-05039.RNA-Seq.chimeric.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 8dd168cd-a6d5-47bc-861f-706285f3eedc.rna_seq.chimeric.gdc_realn.bam 318784757 BAM chimeric harmonized CPTAC3 b33c24d0-d7a5-40b6-98ee-abdc68a5f77d d75ce2cbc5ec1d960db55b49c074bf82 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor' } +C3N-05039.RNA-Seq.genomic.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 8dd168cd-a6d5-47bc-861f-706285f3eedc.rna_seq.genomic.gdc_realn.bam 8268764824 BAM genomic harmonized CPTAC3 cee0c9b9-adef-4af8-8563-e1729eb1b26e 344b471bd97603b9ae8ce8ef7bd0bb5d { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor' } +C3N-05039.RNA-Seq.R1_L005.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 4115334516 FASTQ R1_L005 unaligned CPTAC3 6ab25656-a131-45dd-8109-b25ff504557b 217e7c4eb1e1aec3d0823ff9fadd0323 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C3N-05039.RNA-Seq.R2_L005.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4446311730 FASTQ R2_L005 unaligned CPTAC3 65389fb7-97ce-4735-bc64-6092b9173a2a 21cc7ed3109046088483706b8b9ac3d7 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C3N-05039.RNA-Seq.transcriptome.T.hg38 C3N-05039 GBM RNA-Seq tumor CPT0375550010 8dd168cd-a6d5-47bc-861f-706285f3eedc.rna_seq.transcriptome.gdc_realn.bam 12531294067 BAM transcriptome harmonized CPTAC3 ada7b210-accb-4645-8e6c-074e32bb35de 6a13445f9e53e824494acdc8b4859d49 { 'aliquot_tag': 'ALQ_f8816a34', 'gdc_sample_type': 'Primary Tumor' } C3N-05039.WGS.N C3N-05039 GBM WGS blood_normal CPT0375610002 CPT0375610002.WholeGenome.RP-2158.bam 23424241762 BAM aligned CPTAC3 a018a950-4966-4f64-a4ef-d417ddf5ca0a c74d72c2dccb0f5d16bb3476728303bd { 'aliquot_tag': 'ALQ_7c80ee37', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05039.WGS.N.hg38 C3N-05039 GBM WGS blood_normal CPT0375610002 e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wgs_gdc_realn.bam 69461606241 BAM harmonized CPTAC3 05fa37fb-0df8-498f-8f7f-14f9a735c215 ed160f977b663eea7389ee63244699d5 { 'aliquot_tag': 'ALQ_7c80ee37', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05039.WGS.T C3N-05039 GBM WGS tumor CPT0375550007 CPT0375550007.WholeGenome.RP-2158.bam 27433556193 BAM aligned CPTAC3 4428d05f-66c0-4500-b0d6-b31bf646ba74 855321130f5c1c0df497900fae841dd0 { 'aliquot_tag': 'ALQ_7ffeced6', 'gdc_sample_type': 'Primary Tumor' } @@ -38270,17 +40684,20 @@ C3N-05039.WXS.N C3N-05039 GBM WXS blood_normal CPT0375610002 CPT0375610002.Whole C3N-05039.WXS.N.hg38 C3N-05039 GBM WXS blood_normal CPT0375610002 e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wxs_gdc_realn.bam 41040654784 BAM harmonized CPTAC3 b528bf8e-bae9-4d91-8d62-1746ba1a1ac0 6d00bd229849df2394c9c68f65f15b1a { 'aliquot_tag': 'ALQ_7c80ee37', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05039.WXS.T C3N-05039 GBM WXS tumor CPT0375550007 CPT0375550007.WholeExome.RP-1303.bam 23372925491 BAM aligned CPTAC3 2c3692de-a4a4-42ad-b89b-279b35f07e0f 7bf242a732e39af260b4d1a2e25fbd42 { 'aliquot_tag': 'ALQ_7ffeced6', 'gdc_sample_type': 'Primary Tumor' } C3N-05039.WXS.T.hg38 C3N-05039 GBM WXS tumor CPT0375550007 fe17632c-e4bd-4c42-aa43-255206b1a97b_wxs_gdc_realn.bam 32616896013 BAM harmonized CPTAC3 9b5da686-f797-4f86-b29f-790686e55120 a5980997344df3b781c6fb2f966f68d9 { 'aliquot_tag': 'ALQ_7ffeced6', 'gdc_sample_type': 'Primary Tumor' } -C3N-05069.RNA-Seq.R1_.T C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 20210729_P3_A1_WB7988-Plate3_S1_R1_001.fastq.gz 3349966026 FASTQ R1_ unaligned CPTAC3 133e5128-d1a6-494f-8057-5664f0e6290e 3f65598fdab94e045c04dec386068a3e { 'aliquot_tag': 'ALQ_f7e74951', 'gdc_sample_type': 'Primary Tumor' } -C3N-05069.RNA-Seq.R2_.T C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 20210729_P3_A1_WB7988-Plate3_S1_R2_001.fastq.gz 3492595143 FASTQ R2_ unaligned CPTAC3 579f7c4f-e670-42c0-85e1-6d60b1ea8e41 24621d200b6d0e16fc460e4943d3b67b { 'aliquot_tag': 'ALQ_f7e74951', 'gdc_sample_type': 'Primary Tumor' } +C3N-05069.RNA-Seq.chimeric.T.hg38 C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 1f8d2d7f-6723-4196-b78b-6917d82dcd50.rna_seq.chimeric.gdc_realn.bam 45321058 BAM chimeric harmonized CPTAC3 932fe7f4-4b27-4577-a75b-b162b0bb54c5 576f0cfe68d6c2fd8940e1675a552965 { 'aliquot_tag': 'ALQ_f7e74951', 'gdc_sample_type': 'Primary Tumor' } +C3N-05069.RNA-Seq.genomic.T.hg38 C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 1f8d2d7f-6723-4196-b78b-6917d82dcd50.rna_seq.genomic.gdc_realn.bam 5587340062 BAM genomic harmonized CPTAC3 c9b9d47c-b924-4e5f-8361-dbf880e6a99b 2c71530765e85adc9ade5de7a48b5543 { 'aliquot_tag': 'ALQ_f7e74951', 'gdc_sample_type': 'Primary Tumor' } +C3N-05069.RNA-Seq.T C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 20210729_P3_A1_WB7988-Plate3_S1_R1_001.fastq.gz 3349966026 FASTQ unaligned CPTAC3 133e5128-d1a6-494f-8057-5664f0e6290e 3f65598fdab94e045c04dec386068a3e +C3N-05069.RNA-Seq.T C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 20210729_P3_A1_WB7988-Plate3_S1_R2_001.fastq.gz 3492595143 FASTQ unaligned CPTAC3 579f7c4f-e670-42c0-85e1-6d60b1ea8e41 24621d200b6d0e16fc460e4943d3b67b +C3N-05069.RNA-Seq.transcriptome.T.hg38 C3N-05069 HNSCC RNA-Seq tumor CPT0354700001 1f8d2d7f-6723-4196-b78b-6917d82dcd50.rna_seq.transcriptome.gdc_realn.bam 4097890065 BAM transcriptome harmonized CPTAC3 83d7fa9f-f552-4c3d-9fa8-2b638a926ed6 34ea3549f9411cefc56f9bb25aed2d54 { 'aliquot_tag': 'ALQ_f7e74951', 'gdc_sample_type': 'Primary Tumor' } C3N-05078.MethArray.Green.T C3N-05078 LSCC Methylation Array tumor CPT0313250006 204372030072_R05C01_Grn.idat 13677880 IDAT Green NA CPTAC3 0c5941e4-5d8b-4982-8232-976f7da14e88 71b4df69a73b6f9a2a46730bd40bdbbf { 'aliquot_tag': 'ALQ_b043f245', 'gdc_sample_type': 'Primary Tumor' } C3N-05078.MethArray.Red.T C3N-05078 LSCC Methylation Array tumor CPT0313250006 204372030072_R05C01_Red.idat 13677880 IDAT Red NA CPTAC3 d685cbb0-0bc3-40aa-b0e4-a8c665b49e05 312d5c4d1ceb0f8b2e71d36c9901b104 { 'aliquot_tag': 'ALQ_b043f245', 'gdc_sample_type': 'Primary Tumor' } C3N-05078.miRNA-Seq.T C3N-05078 LSCC miRNA-Seq tumor CPT0313250009 200224_UNC31-K00269_0267_AHC722BBXY_AGTCAA_S13_L008_R1_001.unaln.bam 173285033 BAM unaligned CPTAC3 b3646701-9a49-4df4-be37-c3a957a369e3 536bd3440d3fbbc05d480d627cc3f141 { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor' } C3N-05078.miRNA-Seq.T.hg38 C3N-05078 LSCC miRNA-Seq tumor CPT0313250009 752c3d6f-ac79-4792-88f3-cc9159fe73db_mirnaseq_gdc_realn.bam 200095100 BAM harmonized CPTAC3 03d24c1d-c3df-4a47-b78a-4706f7c0a947 cbb3f952207203f3d5f3a7bed6d53031 { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-05078.RNA-Seq.chimeric.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 ef0fef51-7988-4e96-a65b-0a3476fadf0e.rna_seq.chimeric.gdc_realn.bam 36505011 BAM chimeric harmonized CPTAC3 d6bdc3b5-b1c3-47f7-8f5c-21df7ea83cac 2ac1b33e3ff824cde98288fdcebf8528 { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-05078.RNA-Seq.genomic.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 ef0fef51-7988-4e96-a65b-0a3476fadf0e.rna_seq.genomic.gdc_realn.bam 9149905252 BAM genomic harmonized CPTAC3 a8b40bac-d691-4f4f-a247-5db92d5bccb0 bd5fca171bedefc07338ca35d8a3c8b3 { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-05078.RNA-Seq.R1_L004.T C3N-05078 LSCC RNA-Seq tumor CPT0313250009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L004_R1_001.fastq.gz 4598103896 FASTQ R1_L004 unaligned CPTAC3 7b355ee0-226f-49a8-8e17-2063e5db5be2 6a312d28221324009efbb8bc04c12bd2 { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-05078.RNA-Seq.R2_L004.T C3N-05078 LSCC RNA-Seq tumor CPT0313250009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L004_R2_001.fastq.gz 4948992963 FASTQ R2_L004 unaligned CPTAC3 b207acd5-27e6-4f5e-ab9a-7e1188acef4c 0a53af8cf611af23e5524a7a36e2800d { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor' } -C3N-05078.RNA-Seq.transcriptome.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 ef0fef51-7988-4e96-a65b-0a3476fadf0e.rna_seq.transcriptome.gdc_realn.bam 11454950066 BAM transcriptome harmonized CPTAC3 7f952c89-b9f0-4b07-90e6-d1ee18581554 884130f18d017b81b7fe2bf32f06f525 { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor' } +C3N-05078.RNA-Seq.chimeric.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 6608c58a-30ab-4cc4-8fbe-b8884bae83d2.rna_seq.chimeric.gdc_realn.bam 36509504 BAM chimeric harmonized CPTAC3 0c2fc4fa-4fd9-409d-a5ba-42b1803e3ecf 5cedc3fb598af53ef8e389f47c285bc9 { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor' } +C3N-05078.RNA-Seq.genomic.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 6608c58a-30ab-4cc4-8fbe-b8884bae83d2.rna_seq.genomic.gdc_realn.bam 9151158328 BAM genomic harmonized CPTAC3 4fe71196-6dd2-463c-904e-d71773063f2a 01c445a80cf485e5d5e6aa53ebfdd8f4 { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor' } +C3N-05078.RNA-Seq.R1_L004.T C3N-05078 LSCC RNA-Seq tumor CPT0313250009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L004_R1_001.fastq.gz 4598103896 FASTQ R1_L004 unaligned CPTAC3 7b355ee0-226f-49a8-8e17-2063e5db5be2 6a312d28221324009efbb8bc04c12bd2 { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-05078.RNA-Seq.R2_L004.T C3N-05078 LSCC RNA-Seq tumor CPT0313250009 200505_UNC32-K00270_0245_AHH5FVBBXY_CCAAGTCT-AAGGATGA_S13_L004_R2_001.fastq.gz 4948992963 FASTQ R2_L004 unaligned CPTAC3 b207acd5-27e6-4f5e-ab9a-7e1188acef4c 0a53af8cf611af23e5524a7a36e2800d { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-05078.RNA-Seq.transcriptome.T.hg38 C3N-05078 LSCC RNA-Seq tumor CPT0313250009 6608c58a-30ab-4cc4-8fbe-b8884bae83d2.rna_seq.transcriptome.gdc_realn.bam 13025134872 BAM transcriptome harmonized CPTAC3 af359602-81e7-4cfc-96ff-daea26d26f9e c0953d561bfc94a80b207c71ef6a19df { 'aliquot_tag': 'ALQ_20fcefd4', 'gdc_sample_type': 'Primary Tumor' } C3N-05078.WGS.N C3N-05078 LSCC WGS blood_normal CPT0313270002 CPT0313270002.WholeGenome.RP-2158.bam 25476411907 BAM aligned CPTAC3 e64690b9-1ba0-4053-9664-0ed131d25e4e 723f9ba41a473f4c9541d6ec1073c1c8 { 'aliquot_tag': 'ALQ_cdee653c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05078.WGS.N.hg38 C3N-05078 LSCC WGS blood_normal CPT0313270002 0f680ce2-70af-4ffd-a3de-f38fd6d35eb2_wgs_gdc_realn.bam 75564564438 BAM harmonized CPTAC3 aaca2d93-2662-44b2-b37b-e819c5a0d346 7441a14e68f85020222639949a63a972 { 'aliquot_tag': 'ALQ_cdee653c', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05078.WGS.T C3N-05078 LSCC WGS tumor CPT0313250006 CPT0313250006.WholeGenome.RP-2158.bam 22801546627 BAM aligned CPTAC3 d7d6fa47-c740-429e-b4e6-cb93f424e743 d30fd66a44eb18fb8d5f3143026e63ba { 'aliquot_tag': 'ALQ_b043f245', 'gdc_sample_type': 'Primary Tumor' } @@ -38297,16 +40714,16 @@ C3N-05079.miRNA-Seq.A C3N-05079 LSCC miRNA-Seq tissue_normal CPT0313290009 20051 C3N-05079.miRNA-Seq.A.hg38 C3N-05079 LSCC miRNA-Seq tissue_normal CPT0313290009 898fa3e8-e46f-4ac8-b2d2-9c9698b7deb7_mirnaseq_gdc_realn.bam 303461761 BAM harmonized CPTAC3 8b28f514-b3b9-4107-b077-d82a26dfb180 b3472dceec668303b0d856ffab3b4bac { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-05079.miRNA-Seq.T C3N-05079 LSCC miRNA-Seq tumor CPT0313280009 200224_UNC31-K00269_0267_AHC722BBXY_AGTTCC_S14_L008_R1_001.unaln.bam 204307764 BAM unaligned CPTAC3 00e7ab76-7ea4-4b8a-8a84-483719bdb7d9 f848d0c7db846aff188a6e8837d8266c { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor' } C3N-05079.miRNA-Seq.T.hg38 C3N-05079 LSCC miRNA-Seq tumor CPT0313280009 183f2d4c-8ad9-4d96-8cb8-8ae2bab551ba_mirnaseq_gdc_realn.bam 224251650 BAM harmonized CPTAC3 ae68948d-311c-4f27-aded-43f77773e2ff 2145971f4011d47da589395c52d7b5fa { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor' } -C3N-05079.RNA-Seq.chimeric.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 fd128388-cb6a-4c3c-8075-05745fa63b15.rna_seq.chimeric.gdc_realn.bam 30713145 BAM chimeric harmonized CPTAC3 64c22a8a-d256-4fab-bb7c-b26a898ada77 eda2e984fe52631504429bb2d7e06184 { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05079.RNA-Seq.chimeric.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 9503fd1e-362e-4155-b5c1-44bc18201495.rna_seq.chimeric.gdc_realn.bam 32662786 BAM chimeric harmonized CPTAC3 9903bad3-21da-45ab-9f0f-2d2540d9cefa 09f77a75dcd79f21096e71f7d19f07ea { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor' } -C3N-05079.RNA-Seq.genomic.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 fd128388-cb6a-4c3c-8075-05745fa63b15.rna_seq.genomic.gdc_realn.bam 7842932115 BAM genomic harmonized CPTAC3 b7fd6111-9f7f-48b5-8379-5809e8673f2d 27f2f27d1d253aa91550c82666430b59 { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05079.RNA-Seq.genomic.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 9503fd1e-362e-4155-b5c1-44bc18201495.rna_seq.genomic.gdc_realn.bam 7639969492 BAM genomic harmonized CPTAC3 2b24dda1-b58c-4216-8d10-f508e8a15892 acc3a1b5a57f22c63c5300e9db78c7db { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor' } -C3N-05079.RNA-Seq.R1_L004.T C3N-05079 LSCC RNA-Seq tumor CPT0313280009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L004_R1_001.fastq.gz 3676782114 FASTQ R1_L004 unaligned CPTAC3 2ed19366-78ac-416b-9c74-585b2c05069d b6542365b97ae4ccbc910dd7189d5b76 { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor' } -C3N-05079.RNA-Seq.R1_L005.A C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTATAACC-GATATCGA_S2_L005_R1_001.fastq.gz 4002383357 FASTQ R1_L005 unaligned CPTAC3 f049a6c4-3d7d-4ef7-8b6c-388e6e91cbeb defa00bd94225a35335802ca666bc3d4 { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05079.RNA-Seq.R2_L004.T C3N-05079 LSCC RNA-Seq tumor CPT0313280009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L004_R2_001.fastq.gz 3908549524 FASTQ R2_L004 unaligned CPTAC3 b52bc76f-30d1-40fc-a3d0-c30e7c35fa05 e9a049f694bac4b45937c372c5bd59f5 { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor' } -C3N-05079.RNA-Seq.R2_L005.A C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTATAACC-GATATCGA_S2_L005_R2_001.fastq.gz 4136253059 FASTQ R2_L005 unaligned CPTAC3 f24ce64f-02cc-40a6-a3ea-150c7dd88dae e1fd5408f037976109d4025bde5aa1f2 { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05079.RNA-Seq.transcriptome.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 fd128388-cb6a-4c3c-8075-05745fa63b15.rna_seq.transcriptome.gdc_realn.bam 8894243363 BAM transcriptome harmonized CPTAC3 b5acd07e-530b-4ee8-a91c-907275c0413b 3bf2bf0a31d7bed9c8bbdc497d0633f5 { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05079.RNA-Seq.transcriptome.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 9503fd1e-362e-4155-b5c1-44bc18201495.rna_seq.transcriptome.gdc_realn.bam 8939390553 BAM transcriptome harmonized CPTAC3 370e0813-9709-4d8c-bdd9-0803be3b5e4a 043425c6ee8743c9d118ce8abbecfadc { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor' } +C3N-05079.RNA-Seq.chimeric.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 87435d04-1372-494f-8e2b-f330a8f4f2ef.rna_seq.chimeric.gdc_realn.bam 30706269 BAM chimeric harmonized CPTAC3 fdb05485-e9b6-406a-8f2a-2e31dfc86737 31f35cdd024532b7d4bd8dee2d161676 { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05079.RNA-Seq.chimeric.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 fb414ea0-85e1-4940-b871-ca9b1f6938fa.rna_seq.chimeric.gdc_realn.bam 32671820 BAM chimeric harmonized CPTAC3 7df01112-84a6-4d1d-84c0-bb41cacdabd6 f33d6abc9ef3878e432659478ceabfc0 { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor' } +C3N-05079.RNA-Seq.genomic.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 87435d04-1372-494f-8e2b-f330a8f4f2ef.rna_seq.genomic.gdc_realn.bam 7843889901 BAM genomic harmonized CPTAC3 eae3dc40-746c-455e-87d8-dba7aae0b280 a72f00f7f46b8321d4e3507c54e8289a { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05079.RNA-Seq.genomic.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 fb414ea0-85e1-4940-b871-ca9b1f6938fa.rna_seq.genomic.gdc_realn.bam 7641407302 BAM genomic harmonized CPTAC3 e4c7eb31-c1b7-4eab-8d65-e24802aaf1e0 d0a2f5deb19384da24e731e5a906e301 { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor' } +C3N-05079.RNA-Seq.R1_L004.T C3N-05079 LSCC RNA-Seq tumor CPT0313280009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L004_R1_001.fastq.gz 3676782114 FASTQ R1_L004 unaligned CPTAC3 2ed19366-78ac-416b-9c74-585b2c05069d b6542365b97ae4ccbc910dd7189d5b76 { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-05079.RNA-Seq.R1_L005.A C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTATAACC-GATATCGA_S2_L005_R1_001.fastq.gz 4002383357 FASTQ R1_L005 unaligned CPTAC3 f049a6c4-3d7d-4ef7-8b6c-388e6e91cbeb defa00bd94225a35335802ca666bc3d4 { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-05079.RNA-Seq.R2_L004.T C3N-05079 LSCC RNA-Seq tumor CPT0313280009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTGGACTC-GGAAGCAG_S14_L004_R2_001.fastq.gz 3908549524 FASTQ R2_L004 unaligned CPTAC3 b52bc76f-30d1-40fc-a3d0-c30e7c35fa05 e9a049f694bac4b45937c372c5bd59f5 { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-05079.RNA-Seq.R2_L005.A C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 200505_UNC32-K00270_0245_AHH5FVBBXY_TTATAACC-GATATCGA_S2_L005_R2_001.fastq.gz 4136253059 FASTQ R2_L005 unaligned CPTAC3 f24ce64f-02cc-40a6-a3ea-150c7dd88dae e1fd5408f037976109d4025bde5aa1f2 { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-05079.RNA-Seq.transcriptome.A.hg38 C3N-05079 LSCC RNA-Seq tissue_normal CPT0313290009 87435d04-1372-494f-8e2b-f330a8f4f2ef.rna_seq.transcriptome.gdc_realn.bam 10085239384 BAM transcriptome harmonized CPTAC3 2b474d6b-cd36-46e8-9b92-16f03852d266 0b18f78199887c2850ff5e0534e3da84 { 'aliquot_tag': 'ALQ_e50c02d5', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05079.RNA-Seq.transcriptome.T.hg38 C3N-05079 LSCC RNA-Seq tumor CPT0313280009 fb414ea0-85e1-4940-b871-ca9b1f6938fa.rna_seq.transcriptome.gdc_realn.bam 9978722154 BAM transcriptome harmonized CPTAC3 223624f8-75ef-45a0-80fb-9c09d471c9ed daa35937df0e1a900266b352a8b7b508 { 'aliquot_tag': 'ALQ_d86c2b65', 'gdc_sample_type': 'Primary Tumor' } C3N-05079.WGS.N C3N-05079 LSCC WGS blood_normal CPT0313300002 CPT0313300002.WholeGenome.RP-2158.bam 21731961742 BAM aligned CPTAC3 2d317f20-578a-4417-9c62-9e1610973ac0 9e94f25c9b3a13eeb1fd48fd3237099d { 'aliquot_tag': 'ALQ_b4926a89', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05079.WGS.N.hg38 C3N-05079 LSCC WGS blood_normal CPT0313300002 cc6e30e4-a477-48c7-b201-528211f3d5df_wgs_gdc_realn.bam 65080632447 BAM harmonized CPTAC3 77f97a94-18b9-4cb0-8b97-498eb2a9b441 ec8ff425188cb19f5281626876224c89 { 'aliquot_tag': 'ALQ_b4926a89', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05079.WGS.T C3N-05079 LSCC WGS tumor CPT0313280006 CPT0313280006.WholeGenome.RP-2158.bam 24614136960 BAM aligned CPTAC3 a82cf098-ab13-4cd1-ae24-cff89ea736e3 06bdcfd8363d42f4b3e4439e0276ea4f { 'aliquot_tag': 'ALQ_48d336f4', 'gdc_sample_type': 'Primary Tumor' } @@ -38321,11 +40738,11 @@ C3N-05080.MethArray.Green.T C3N-05080 LSCC Methylation Array tumor CPT0321640006 C3N-05080.MethArray.Red.T C3N-05080 LSCC Methylation Array tumor CPT0321640006 204372030085_R06C01_Red.idat 13677880 IDAT Red NA CPTAC3 252d6d54-d5ce-4a9c-bfb8-a9d3a6c95c5e 7123562e6f9dcf5643387bdd0b67c494 { 'aliquot_tag': 'ALQ_fa28f29', 'gdc_sample_type': 'Primary Tumor' } C3N-05080.miRNA-Seq.T C3N-05080 LSCC miRNA-Seq tumor CPT0321640009 200224_UNC31-K00269_0267_AHC722BBXY_GACGAC_S41_L007_R1_001.unaln.bam 234621804 BAM unaligned CPTAC3 d41874e9-10da-4c02-94f0-03b3caee5931 2df4bc97021a5d0f9f4d5cad0fa0d585 { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor' } C3N-05080.miRNA-Seq.T.hg38 C3N-05080 LSCC miRNA-Seq tumor CPT0321640009 73f1bc52-433a-4a9b-a3fd-37d871f3dfd0_mirnaseq_gdc_realn.bam 260564259 BAM harmonized CPTAC3 2f921283-151e-4282-a1bf-16c4226cb0b8 9759d158dad57a31e4eb7a404616d36e { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-05080.RNA-Seq.chimeric.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 8996b3e2-c136-4d2d-9929-d6fba39cb063.rna_seq.chimeric.gdc_realn.bam 43468199 BAM chimeric harmonized CPTAC3 284b013c-6552-4a7b-84ae-17d98c25ca54 8e0a09e0657c3e7c7834f6c027a5fcea { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-05080.RNA-Seq.genomic.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 8996b3e2-c136-4d2d-9929-d6fba39cb063.rna_seq.genomic.gdc_realn.bam 10723392752 BAM genomic harmonized CPTAC3 0ace8117-e4a0-4a37-971b-422058dd9c8f f016a5279137ec6cf4d0abab0a758713 { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-05080.RNA-Seq.R1_L003.T C3N-05080 LSCC RNA-Seq tumor CPT0321640009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATGGAT-CTGTATTA_S9_L003_R1_001.fastq.gz 5320575999 FASTQ R1_L003 unaligned CPTAC3 b5efa31d-accd-4914-9142-7e7b1a89170e 51b3b22e41e48c08e5639527dcf76398 { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-05080.RNA-Seq.R2_L003.T C3N-05080 LSCC RNA-Seq tumor CPT0321640009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATGGAT-CTGTATTA_S9_L003_R2_001.fastq.gz 5656817918 FASTQ R2_L003 unaligned CPTAC3 a7e0434d-6689-4831-b5ff-0df17c1f3191 b1a505b0feb29a82f72fd98ccd236cd5 { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor' } -C3N-05080.RNA-Seq.transcriptome.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 8996b3e2-c136-4d2d-9929-d6fba39cb063.rna_seq.transcriptome.gdc_realn.bam 13343612357 BAM transcriptome harmonized CPTAC3 c83859fa-1090-4f6f-9077-6cf61ef3e354 54b359283b0bc70b4e8ba44a372c6d23 { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor' } +C3N-05080.RNA-Seq.chimeric.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 be36c7c6-0666-445d-8d3d-6f784df5041d.rna_seq.chimeric.gdc_realn.bam 43479221 BAM chimeric harmonized CPTAC3 ed66ae15-8b54-4070-b523-69b99cf71885 3915f2a9b1a174885b86b91af8266f39 { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor' } +C3N-05080.RNA-Seq.genomic.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 be36c7c6-0666-445d-8d3d-6f784df5041d.rna_seq.genomic.gdc_realn.bam 10726704439 BAM genomic harmonized CPTAC3 607682c6-3c33-4684-ad6e-5f1f82518efa 5b1d6b9173cb8b04cc6fc00bf826b50e { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor' } +C3N-05080.RNA-Seq.R1_L003.T C3N-05080 LSCC RNA-Seq tumor CPT0321640009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATGGAT-CTGTATTA_S9_L003_R1_001.fastq.gz 5320575999 FASTQ R1_L003 unaligned CPTAC3 b5efa31d-accd-4914-9142-7e7b1a89170e 51b3b22e41e48c08e5639527dcf76398 { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-05080.RNA-Seq.R2_L003.T C3N-05080 LSCC RNA-Seq tumor CPT0321640009 200428_UNC32-K00270_0243_AHG3Y3BBXY_ATATGGAT-CTGTATTA_S9_L003_R2_001.fastq.gz 5656817918 FASTQ R2_L003 unaligned CPTAC3 a7e0434d-6689-4831-b5ff-0df17c1f3191 b1a505b0feb29a82f72fd98ccd236cd5 { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-05080.RNA-Seq.transcriptome.T.hg38 C3N-05080 LSCC RNA-Seq tumor CPT0321640009 be36c7c6-0666-445d-8d3d-6f784df5041d.rna_seq.transcriptome.gdc_realn.bam 14941845517 BAM transcriptome harmonized CPTAC3 5ad4b6e4-5d69-4165-8db9-9144d22d7623 f8a41f8ef9bc349076edceb0f084f6f6 { 'aliquot_tag': 'ALQ_9f1d92b8', 'gdc_sample_type': 'Primary Tumor' } C3N-05080.WGS.N C3N-05080 LSCC WGS blood_normal CPT0321670002 CPT0321670002.WholeGenome.RP-2158.bam 32117416863 BAM aligned CPTAC3 1065f29d-90b1-4b01-80a4-bc728f1f4480 e9b11e9fa5b8c48977f4905232e86df6 { 'aliquot_tag': 'ALQ_4f6f31e0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05080.WGS.N.hg38 C3N-05080 LSCC WGS blood_normal CPT0321670002 7ab7860a-416f-40a9-ad13-90c49c392507_wgs_gdc_realn.bam 94869815892 BAM harmonized CPTAC3 fede5ded-dfdb-46d0-a96c-db681ead09da e9262813c7f03216fdb139f28853b5e6 { 'aliquot_tag': 'ALQ_4f6f31e0', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05080.WGS.T C3N-05080 LSCC WGS tumor CPT0321640006 CPT0321640006.WholeGenome.RP-2158.bam 23242180231 BAM aligned CPTAC3 5dbde3eb-5a93-4395-93c2-bff51e805c81 7ab44b26d1dfbea222fc3d631b677fbf { 'aliquot_tag': 'ALQ_fa28f29', 'gdc_sample_type': 'Primary Tumor' } @@ -38343,37 +40760,54 @@ C3N-05085.miRNA-Seq.A.hg38 C3N-05085 LSCC miRNA-Seq tissue_normal CPT0313370006 C3N-05085.miRNA-Seq.T C3N-05085 LSCC miRNA-Seq tumor CPT0384250009 201209_UNC32-K00270_0265_AHJ55WBBXY_CTTGTA_S29_L007_R1_001.unaln.bam 265183032 BAM unaligned CPTAC3 caca83ea-6ccb-4748-9a67-8f571a34199b 5ae07305fea0b299591e28fbbf8072c9 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor' } C3N-05085.miRNA-Seq.T.hg38 C3N-05085 LSCC miRNA-Seq tumor CPT0384250009 3f2cf33c-9f15-45a7-a205-58a1efb2011c_mirnaseq_gdc_realn.bam 285799429 BAM harmonized CPTAC3 cced8d3f-f594-4492-b53f-58f57348eb59 d993f618265558cc305ff64a1a9ad044 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor' } C3N-05085.REP_5496184.WGS.N C3N-05085 LSCC WGS blood_normal CPT0405320002 CPT0405320002.WholeGenome.RP-2158.bam 25924162058 BAM aligned CPTAC3 1d116097-e964-4e1a-8137-0bc7c2d82b3b c1fe3ef5b481e0439096dec04de52c78 { 'aliquot_tag': 'REP_5496184', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } +C3N-05085.REP_5496184.WGS.N.hg38 C3N-05085 LSCC WGS blood_normal CPT0405320002 791d45d2-e9bf-4c89-ab17-19af53f62009_wgs_gdc_realn.bam 75592846564 BAM harmonized CPTAC3 7ed0a11a-aff9-436c-88ce-3b5cdc834dd3 8732fe297ccfb82fa46096baff6cc2bc { 'aliquot_tag': 'REP_5496184', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } C3N-05085.REP_5496184.WXS.N C3N-05085 LSCC WXS blood_normal CPT0405320002 CPT0405320002.WholeExome.RP-1303.bam 20178949836 BAM aligned CPTAC3 3adc4457-fa35-48a2-b840-fb8eaf8896be 40296d7290a7bcb9012738d76b39df8d { 'aliquot_tag': 'REP_5496184', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } -C3N-05085.RNA-Seq.chimeric.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.chimeric.gdc_realn.bam 438394741 BAM chimeric harmonized CPTAC3 8b525d74-78f5-437a-8756-e279fc79ff86 c0cac62f2834bc8cf462f411c2e8d007 { 'aliquot_tag': 'ALQ_1df7280', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05085.RNA-Seq.chimeric.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.chimeric.gdc_realn.bam 479205123 BAM chimeric harmonized CPTAC3 913acfba-a2ab-4c66-9d2a-527f3aea5b8a ac35bc33d8b449545eb2b9bfdb2bafa9 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor' } -C3N-05085.RNA-Seq.genomic.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.genomic.gdc_realn.bam 8029161656 BAM genomic harmonized CPTAC3 801e758c-a4d0-46eb-80ad-66955ab24c0b c78fb0775e5825e5972e2676e60bc58b { 'aliquot_tag': 'ALQ_1df7280', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05085.RNA-Seq.genomic.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.genomic.gdc_realn.bam 8657791455 BAM genomic harmonized CPTAC3 cca77182-8040-47df-8a12-0067398f6c1b 5cfa13675d5f2f3068ef2a9e167e1079 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor' } -C3N-05085.RNA-Seq.R1_L004.A C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R1_001.fastq.gz 4017555811 FASTQ R1_L004 unaligned CPTAC3 8be64a46-9b70-4522-9aa3-3b130369eefd 1c0b8662223c4eed8dc911658545583c { 'aliquot_tag': 'ALQ_1df7280', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05085.RNA-Seq.R1_L007.T C3N-05085 LSCC RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 4419596280 FASTQ R1_L007 unaligned CPTAC3 dfdbf338-11c7-4894-bacb-ff03cdedd459 fd61bb5f9863a8009b45e95c60cac2c1 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor' } -C3N-05085.RNA-Seq.R2_L004.A C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R2_001.fastq.gz 4426414996 FASTQ R2_L004 unaligned CPTAC3 5591ec5f-9a25-44cf-98a6-bab87a2d8707 d92e1d89d9fc564f303d7fc459ec2fe4 { 'aliquot_tag': 'ALQ_1df7280', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05085.RNA-Seq.R2_L007.T C3N-05085 LSCC RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4829793715 FASTQ R2_L007 unaligned CPTAC3 75d4f8b1-11c7-4a0f-beac-ba3ab8286040 1582dc7cddc90b715ac6b7b9b752b620 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor' } -C3N-05085.RNA-Seq.transcriptome.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 e1b990d6-8ad2-440b-b28e-ebe8c8506da4.rna_seq.transcriptome.gdc_realn.bam 8180973134 BAM transcriptome harmonized CPTAC3 ca83d9a4-37ee-4132-99f6-c6e532ff0e34 495a6140112aa9c6531a3ad052c98223 { 'aliquot_tag': 'ALQ_1df7280', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05085.RNA-Seq.transcriptome.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 7eee2b53-2f7b-4606-b4b5-9fa380bb08ff.rna_seq.transcriptome.gdc_realn.bam 11130397782 BAM transcriptome harmonized CPTAC3 b4f27b74-7c86-4722-9e74-4f46cf656602 1a75e24e752836fc261eadf4be245242 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor' } +C3N-05085.REP_5496184.WXS.N.hg38 C3N-05085 LSCC WXS blood_normal CPT0405320002 791d45d2-e9bf-4c89-ab17-19af53f62009_wxs_gdc_realn.bam 27814762150 BAM harmonized CPTAC3 49dd8a0f-953c-4132-a09a-c1eddd5fd528 2869981e7a4b4ff34ff2759ca82aab09 { 'aliquot_tag': 'REP_5496184', 'gdc_sample_type': 'Blood Derived Normal', 'aliquot_annotation': 'Duplicate item: Replacement DNA Aliquot ' } +C3N-05085.RNA-Seq.chimeric.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 09c6b4b1-92c3-4395-ab3b-ffbb7fae2a95.rna_seq.chimeric.gdc_realn.bam 438404072 BAM chimeric harmonized CPTAC3 e4089443-0221-4eba-b170-e65df5a5b8b0 5ac9e5d0f42308346f6244b8377be8f5 { 'aliquot_tag': 'ALQ_1df7280', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05085.RNA-Seq.chimeric.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 a6755119-45f4-49d0-a2be-3d630f5e30f5.rna_seq.chimeric.gdc_realn.bam 479257045 BAM chimeric harmonized CPTAC3 94f25820-e2e2-4996-859f-59b29d9ed510 89589ea7a10325d11af8d21f8c3bafa7 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor' } +C3N-05085.RNA-Seq.genomic.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 09c6b4b1-92c3-4395-ab3b-ffbb7fae2a95.rna_seq.genomic.gdc_realn.bam 8034870087 BAM genomic harmonized CPTAC3 55123a6b-8493-457f-8c12-111b48370630 8c827fc6984c5fd0105939b1a84121a2 { 'aliquot_tag': 'ALQ_1df7280', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05085.RNA-Seq.genomic.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 a6755119-45f4-49d0-a2be-3d630f5e30f5.rna_seq.genomic.gdc_realn.bam 8666268565 BAM genomic harmonized CPTAC3 63991276-cbfd-4056-884e-6a90d09f6e4e 68d8e9808189abe340efc7e50ca3dfd1 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor' } +C3N-05085.RNA-Seq.R1_L004.A C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R1_001.fastq.gz 4017555811 FASTQ R1_L004 unaligned CPTAC3 8be64a46-9b70-4522-9aa3-3b130369eefd 1c0b8662223c4eed8dc911658545583c { 'aliquot_tag': 'ALQ_1df7280', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +C3N-05085.RNA-Seq.R1_L007.T C3N-05085 LSCC RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R1_001.fastq.gz 4419596280 FASTQ R1_L007 unaligned CPTAC3 dfdbf338-11c7-4894-bacb-ff03cdedd459 fd61bb5f9863a8009b45e95c60cac2c1 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L007' } +C3N-05085.RNA-Seq.R2_L004.A C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 201103_UNC31-K00269_0292_AHJ772BBXY_TCCAACGC-TTGGACTT_S16_L004_R2_001.fastq.gz 4426414996 FASTQ R2_L004 unaligned CPTAC3 5591ec5f-9a25-44cf-98a6-bab87a2d8707 d92e1d89d9fc564f303d7fc459ec2fe4 { 'aliquot_tag': 'ALQ_1df7280', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } +C3N-05085.RNA-Seq.R2_L007.T C3N-05085 LSCC RNA-Seq tumor CPT0384250009 201103_UNC31-K00269_0292_AHJ772BBXY_CTCTCGTC-TATAACCT_S26_L007_R2_001.fastq.gz 4829793715 FASTQ R2_L007 unaligned CPTAC3 75d4f8b1-11c7-4a0f-beac-ba3ab8286040 1582dc7cddc90b715ac6b7b9b752b620 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L007' } +C3N-05085.RNA-Seq.transcriptome.A.hg38 C3N-05085 LSCC RNA-Seq tissue_normal CPT0313370006 09c6b4b1-92c3-4395-ab3b-ffbb7fae2a95.rna_seq.transcriptome.gdc_realn.bam 9313298244 BAM transcriptome harmonized CPTAC3 8216c670-da05-4fe0-bb2b-5c319408b58f 2af9a673f824e216ff767eb05b5911b9 { 'aliquot_tag': 'ALQ_1df7280', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05085.RNA-Seq.transcriptome.T.hg38 C3N-05085 LSCC RNA-Seq tumor CPT0384250009 a6755119-45f4-49d0-a2be-3d630f5e30f5.rna_seq.transcriptome.gdc_realn.bam 12743935850 BAM transcriptome harmonized CPTAC3 ab3f20e8-e31f-48a0-ad8e-e0d20cd5b3af ea025bd3ffca5d6c4211b865718298b2 { 'aliquot_tag': 'ALQ_fa14ca71', 'gdc_sample_type': 'Primary Tumor' } C3N-05085.WGS.T C3N-05085 LSCC WGS tumor CPT0384250006 CPT0384250006.WholeGenome.RP-2158.bam 21211133335 BAM aligned CPTAC3 412d0c18-22a9-4147-8e19-a25d81f8c0ae 762a2a11059fd33a495ac7f242c50247 { 'aliquot_tag': 'ALQ_6aabd7e0', 'gdc_sample_type': 'Primary Tumor' } +C3N-05085.WGS.T.hg38 C3N-05085 LSCC WGS tumor CPT0384250006 9ebe410e-0b99-4c9e-9022-6a721a498140_wgs_gdc_realn.bam 64551572586 BAM harmonized CPTAC3 5cb9a5ae-237f-41b0-9f23-2b3189a6fccd a0cdc729537a58fba6013faa4c510bc9 { 'aliquot_tag': 'ALQ_6aabd7e0', 'gdc_sample_type': 'Primary Tumor' } C3N-05085.WXS.A C3N-05085 LSCC WXS tissue_normal CPT0313370009 CPT0313370009.WholeExome.RP-1303.bam 21481632964 BAM aligned CPTAC3 34e0b32d-349d-404d-a76d-4d4ed7a903a7 86cede8f1fe10904fe4b708d1b1f643f { 'aliquot_tag': 'ALQ_91606f11', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05085.WXS.A.hg38 C3N-05085 LSCC WXS tissue_normal CPT0313370009 1a21506d-9b28-460a-8c27-8d35cfd1e3ba_wxs_gdc_realn.bam 29561603186 BAM harmonized CPTAC3 a984f9dd-ba41-4d8c-8dfe-dad9a3ceb3ad bab73de8fca3cfd6a48f7f5ab06541db { 'aliquot_tag': 'ALQ_91606f11', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-05085.WXS.T C3N-05085 LSCC WXS tumor CPT0384250006 CPT0384250006.WholeExome.RP-1303.bam 18477809952 BAM aligned CPTAC3 38996dd7-ff1b-4837-a18f-4d15c318f6a3 ae0663dd14825e5ca0f5c8613c5e333a { 'aliquot_tag': 'ALQ_6aabd7e0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05093.RNA-Seq.R1_.T C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 20210729_P3_C5_WB7988-Plate3_S29_R1_001.fastq.gz 4607138936 FASTQ R1_ unaligned CPTAC3 fc8f4596-2078-4645-b283-341feb6454ec 4e3f0ec226c40496c00e83856dfe59ce { 'aliquot_tag': 'ALQ_6b1fb84', 'gdc_sample_type': 'Primary Tumor' } -C3N-05093.RNA-Seq.R2_.T C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 20210729_P3_C5_WB7988-Plate3_S29_R2_001.fastq.gz 4716010063 FASTQ R2_ unaligned CPTAC3 548edcb4-222d-4c8b-aa4c-f47f3dd7c251 4e18f91c2542417e6e4c60b96d52dd75 { 'aliquot_tag': 'ALQ_6b1fb84', 'gdc_sample_type': 'Primary Tumor' } -C3N-05097.RNA-Seq.R1_.T C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 20210729_P3_D5_WB7988-Plate3_S41_R1_001.fastq.gz 5042843421 FASTQ R1_ unaligned CPTAC3 bb58cb9f-4672-4053-ace5-6fe7465c8b95 bdc69d85697b37cac140769f2c33ab8c { 'aliquot_tag': 'ALQ_7c71a8e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-05097.RNA-Seq.R2_.T C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 20210729_P3_D5_WB7988-Plate3_S41_R2_001.fastq.gz 5145457253 FASTQ R2_ unaligned CPTAC3 c7a4c4e6-bb74-4557-8063-da980cead096 f8bf6cd78d662182ab059c4fac06f92a { 'aliquot_tag': 'ALQ_7c71a8e4', 'gdc_sample_type': 'Primary Tumor' } -C3N-05098.RNA-Seq.R1_.T C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 20210714_P1_D7_WB7988_plate1_S43_R1_001.fastq.gz 3423487170 FASTQ R1_ unaligned CPTAC3 ea740f15-a73a-486b-9ba9-0658e445d549 70ddb46b677ee3cdfc3f4fe859177aad { 'aliquot_tag': 'ALQ_f3315d44', 'gdc_sample_type': 'Primary Tumor' } -C3N-05098.RNA-Seq.R2_.T C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 20210714_P1_D7_WB7988_plate1_S43_R2_001.fastq.gz 3615603410 FASTQ R2_ unaligned CPTAC3 6b76e88e-71f4-44f5-9be6-03662e92b514 4b3c0df0155b9bfc1d4fe19a56db9823 { 'aliquot_tag': 'ALQ_f3315d44', 'gdc_sample_type': 'Primary Tumor' } -C3N-05099.RNA-Seq.R1_.T C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 20210729_P3_B3_WB7988-Plate3_S15_R1_001.fastq.gz 4731151101 FASTQ R1_ unaligned CPTAC3 d05d7bf3-cb2b-442b-b220-71c2786c30b4 c16f5a72714c76ed1ed75ce3e1a7e7a5 { 'aliquot_tag': 'ALQ_89f10e24', 'gdc_sample_type': 'Primary Tumor' } -C3N-05099.RNA-Seq.R2_.T C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 20210729_P3_B3_WB7988-Plate3_S15_R2_001.fastq.gz 4806018097 FASTQ R2_ unaligned CPTAC3 f7ed7d7b-4897-41f2-b774-709dc3ad0d8a ae0f695c744d26f81540cdada5339c55 { 'aliquot_tag': 'ALQ_89f10e24', 'gdc_sample_type': 'Primary Tumor' } +C3N-05085.WXS.T.hg38 C3N-05085 LSCC WXS tumor CPT0384250006 9ebe410e-0b99-4c9e-9022-6a721a498140_wxs_gdc_realn.bam 25516484420 BAM harmonized CPTAC3 15db306e-ca5c-4db6-8100-ecff5341b449 a49df19fbd583e7b51f3f9375b2dbf1d { 'aliquot_tag': 'ALQ_6aabd7e0', 'gdc_sample_type': 'Primary Tumor' } +C3N-05093.RNA-Seq.chimeric.T.hg38 C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 4930d4ae-a4c3-4927-8498-5146caa1619a.rna_seq.chimeric.gdc_realn.bam 108199374 BAM chimeric harmonized CPTAC3 8cc546b6-b107-4511-b46a-0c8a8663f444 b850530d0996412ed65af505aeba80d6 { 'aliquot_tag': 'ALQ_6b1fb84', 'gdc_sample_type': 'Primary Tumor' } +C3N-05093.RNA-Seq.genomic.T.hg38 C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 4930d4ae-a4c3-4927-8498-5146caa1619a.rna_seq.genomic.gdc_realn.bam 6137995366 BAM genomic harmonized CPTAC3 d9cd0ab8-82c7-4b5e-9f9d-96f700cd2df0 5dbdea6d66440b4e5de66d48a2946cd3 { 'aliquot_tag': 'ALQ_6b1fb84', 'gdc_sample_type': 'Primary Tumor' } +C3N-05093.RNA-Seq.T C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 20210729_P3_C5_WB7988-Plate3_S29_R1_001.fastq.gz 4607138936 FASTQ unaligned CPTAC3 fc8f4596-2078-4645-b283-341feb6454ec 4e3f0ec226c40496c00e83856dfe59ce +C3N-05093.RNA-Seq.T C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 20210729_P3_C5_WB7988-Plate3_S29_R2_001.fastq.gz 4716010063 FASTQ unaligned CPTAC3 548edcb4-222d-4c8b-aa4c-f47f3dd7c251 4e18f91c2542417e6e4c60b96d52dd75 +C3N-05093.RNA-Seq.transcriptome.T.hg38 C3N-05093 HNSCC RNA-Seq tumor CPT0354800001 4930d4ae-a4c3-4927-8498-5146caa1619a.rna_seq.transcriptome.gdc_realn.bam 3796501198 BAM transcriptome harmonized CPTAC3 29ae4afc-8f92-4786-89b2-140553d9b1c3 aa6fca900dc8cdc0f2a6893ab2bca858 { 'aliquot_tag': 'ALQ_6b1fb84', 'gdc_sample_type': 'Primary Tumor' } +C3N-05097.RNA-Seq.chimeric.T.hg38 C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 da2b3e7a-dca8-406a-8849-c67f0f238a6c.rna_seq.chimeric.gdc_realn.bam 138631748 BAM chimeric harmonized CPTAC3 63160a48-2a46-4a53-b1bd-a0bec26aa935 293f0e525305d9c4ffe72d1a27e37065 { 'aliquot_tag': 'ALQ_7c71a8e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-05097.RNA-Seq.genomic.T.hg38 C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 da2b3e7a-dca8-406a-8849-c67f0f238a6c.rna_seq.genomic.gdc_realn.bam 7718870447 BAM genomic harmonized CPTAC3 7f1a8eb0-70f4-48a1-a4ea-4aff792ce136 7bc040f3c7333e433393f1e67badf222 { 'aliquot_tag': 'ALQ_7c71a8e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-05097.RNA-Seq.T C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 20210729_P3_D5_WB7988-Plate3_S41_R1_001.fastq.gz 5042843421 FASTQ unaligned CPTAC3 bb58cb9f-4672-4053-ace5-6fe7465c8b95 bdc69d85697b37cac140769f2c33ab8c +C3N-05097.RNA-Seq.T C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 20210729_P3_D5_WB7988-Plate3_S41_R2_001.fastq.gz 5145457253 FASTQ unaligned CPTAC3 c7a4c4e6-bb74-4557-8063-da980cead096 f8bf6cd78d662182ab059c4fac06f92a +C3N-05097.RNA-Seq.transcriptome.T.hg38 C3N-05097 HNSCC RNA-Seq tumor CPT0354820001 da2b3e7a-dca8-406a-8849-c67f0f238a6c.rna_seq.transcriptome.gdc_realn.bam 4455931015 BAM transcriptome harmonized CPTAC3 93d8dcfc-2378-4adc-8f3c-d80ecd9472fa 70a708a3f195245114a1c11171702d76 { 'aliquot_tag': 'ALQ_7c71a8e4', 'gdc_sample_type': 'Primary Tumor' } +C3N-05098.RNA-Seq.chimeric.T.hg38 C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 371e341d-74f4-4016-9a2b-fe728721c1c8.rna_seq.chimeric.gdc_realn.bam 49516818 BAM chimeric harmonized CPTAC3 211ed634-27f9-4b57-9a91-31d1cd6cf41d 7fa2a5e94f7a70560ca79875a651fd15 { 'aliquot_tag': 'ALQ_f3315d44', 'gdc_sample_type': 'Primary Tumor' } +C3N-05098.RNA-Seq.genomic.T.hg38 C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 371e341d-74f4-4016-9a2b-fe728721c1c8.rna_seq.genomic.gdc_realn.bam 6450987247 BAM genomic harmonized CPTAC3 b2ddc8da-5622-4239-ad1f-c8e8e9288832 362bb377693e66ffb7c674cf5b05214b { 'aliquot_tag': 'ALQ_f3315d44', 'gdc_sample_type': 'Primary Tumor' } +C3N-05098.RNA-Seq.T C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 20210714_P1_D7_WB7988_plate1_S43_R1_001.fastq.gz 3423487170 FASTQ unaligned CPTAC3 ea740f15-a73a-486b-9ba9-0658e445d549 70ddb46b677ee3cdfc3f4fe859177aad +C3N-05098.RNA-Seq.T C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 20210714_P1_D7_WB7988_plate1_S43_R2_001.fastq.gz 3615603410 FASTQ unaligned CPTAC3 6b76e88e-71f4-44f5-9be6-03662e92b514 4b3c0df0155b9bfc1d4fe19a56db9823 +C3N-05098.RNA-Seq.transcriptome.T.hg38 C3N-05098 HNSCC RNA-Seq tumor CPT0354840001 371e341d-74f4-4016-9a2b-fe728721c1c8.rna_seq.transcriptome.gdc_realn.bam 4512430992 BAM transcriptome harmonized CPTAC3 cdcede9c-3811-4031-871b-d2da63b4d2ec 817b38976b5ebee53dd95b66124e36be { 'aliquot_tag': 'ALQ_f3315d44', 'gdc_sample_type': 'Primary Tumor' } +C3N-05099.RNA-Seq.chimeric.T.hg38 C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 fb571b36-b4b9-4ab4-b0f8-64cbff354497.rna_seq.chimeric.gdc_realn.bam 136136053 BAM chimeric harmonized CPTAC3 19bae85a-2c25-471e-8419-93fed7962041 9c6d031a92a4ba58a95ad2bf927ed220 { 'aliquot_tag': 'ALQ_89f10e24', 'gdc_sample_type': 'Primary Tumor' } +C3N-05099.RNA-Seq.genomic.T.hg38 C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 fb571b36-b4b9-4ab4-b0f8-64cbff354497.rna_seq.genomic.gdc_realn.bam 7461347703 BAM genomic harmonized CPTAC3 0e86b18d-4298-48cf-9618-9c6218b83fe1 3ef4ba8a7f7e08bd34ddb7d9ca31a707 { 'aliquot_tag': 'ALQ_89f10e24', 'gdc_sample_type': 'Primary Tumor' } +C3N-05099.RNA-Seq.T C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 20210729_P3_B3_WB7988-Plate3_S15_R1_001.fastq.gz 4731151101 FASTQ unaligned CPTAC3 d05d7bf3-cb2b-442b-b220-71c2786c30b4 c16f5a72714c76ed1ed75ce3e1a7e7a5 +C3N-05099.RNA-Seq.T C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 20210729_P3_B3_WB7988-Plate3_S15_R2_001.fastq.gz 4806018097 FASTQ unaligned CPTAC3 f7ed7d7b-4897-41f2-b774-709dc3ad0d8a ae0f695c744d26f81540cdada5339c55 +C3N-05099.RNA-Seq.transcriptome.T.hg38 C3N-05099 HNSCC RNA-Seq tumor CPT0354860001 fb571b36-b4b9-4ab4-b0f8-64cbff354497.rna_seq.transcriptome.gdc_realn.bam 5960974803 BAM transcriptome harmonized CPTAC3 92548086-6437-4cdc-8c50-5d6f5ff33222 80a917a1d79ff78cc7263171e377c711 { 'aliquot_tag': 'ALQ_89f10e24', 'gdc_sample_type': 'Primary Tumor' } C3N-05100.MethArray.Green.T C3N-05100 LSCC Methylation Array tumor CPT0321680006 204372030023_R06C01_Grn.idat 13677895 IDAT Green NA CPTAC3 42ea3db3-7878-4d91-b7df-10969ada1006 30a9c32459d689e4e3daf2fc43b3e232 { 'aliquot_tag': 'ALQ_ca526228', 'gdc_sample_type': 'Primary Tumor' } C3N-05100.MethArray.Red.T C3N-05100 LSCC Methylation Array tumor CPT0321680006 204372030023_R06C01_Red.idat 13677895 IDAT Red NA CPTAC3 a42733c2-680c-48ae-9dc9-05063e929cb7 f7361203d4e0e9e65e189cfa3b49a2d1 { 'aliquot_tag': 'ALQ_ca526228', 'gdc_sample_type': 'Primary Tumor' } C3N-05100.miRNA-Seq.T C3N-05100 LSCC miRNA-Seq tumor CPT0321680009 200224_UNC31-K00269_0267_AHC722BBXY_GTTTCG_S21_L008_R1_001.unaln.bam 205266159 BAM unaligned CPTAC3 089f3849-cf1f-43fa-ac2a-5f52e90983be 0473fd72d896d6cf03b9da1e588a24c9 { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor' } C3N-05100.miRNA-Seq.T.hg38 C3N-05100 LSCC miRNA-Seq tumor CPT0321680009 0337b011-ac73-49e8-b392-60604c3a9de4_mirnaseq_gdc_realn.bam 229694116 BAM harmonized CPTAC3 1c629d09-b8d4-4947-aba8-87570144fc1f 1b41bf24675d60bc5438d6d5b1cf8863 { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor' } -C3N-05100.RNA-Seq.chimeric.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 44a27b7b-0d0f-46bc-a486-105a1992ad78.rna_seq.chimeric.gdc_realn.bam 29146998 BAM chimeric harmonized CPTAC3 af910c13-3db1-47b6-88ed-ad28bc232f6a 62139b57d980acdd0e64098fd3590f56 { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor' } -C3N-05100.RNA-Seq.genomic.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 44a27b7b-0d0f-46bc-a486-105a1992ad78.rna_seq.genomic.gdc_realn.bam 7832391488 BAM genomic harmonized CPTAC3 18c8bd08-50de-41d1-a3bc-14e49f0b695e 23e9267a375b06a53e3e58a258ecd956 { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor' } -C3N-05100.RNA-Seq.R1_L002.T C3N-05100 LSCC RNA-Seq tumor CPT0321680009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGTACCTT-AAGACGTC_S5_L002_R1_001.fastq.gz 3707066529 FASTQ R1_L002 unaligned CPTAC3 94e80fa3-c4d8-4da0-97e7-da399c4939a1 d1815b8fb5167b5a84f3678434acaee4 { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor' } -C3N-05100.RNA-Seq.R2_L002.T C3N-05100 LSCC RNA-Seq tumor CPT0321680009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGTACCTT-AAGACGTC_S5_L002_R2_001.fastq.gz 4036803940 FASTQ R2_L002 unaligned CPTAC3 b2c5daa7-707a-4c87-bf16-6b740134c2d1 f045608be98f734a412867a6c1c2c96a { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor' } -C3N-05100.RNA-Seq.transcriptome.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 44a27b7b-0d0f-46bc-a486-105a1992ad78.rna_seq.transcriptome.gdc_realn.bam 10248914267 BAM transcriptome harmonized CPTAC3 e55f81e9-6fba-4a8d-8297-d21c9146ad2b 9e9b5fa712cc870f7435be964cee3229 { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor' } +C3N-05100.RNA-Seq.chimeric.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 f9bb6299-0989-4067-bb91-76534af83fb1.rna_seq.chimeric.gdc_realn.bam 29143412 BAM chimeric harmonized CPTAC3 6b3f355e-3464-4154-adb4-2aa21f428d77 9b5cda3de2da81d37f24dd388af9e6bb { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor' } +C3N-05100.RNA-Seq.genomic.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 f9bb6299-0989-4067-bb91-76534af83fb1.rna_seq.genomic.gdc_realn.bam 7833790111 BAM genomic harmonized CPTAC3 8b10d7f4-8290-46db-bbb7-2d396ae3005a 68d236480d5fa48132b2302d4a9d3076 { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor' } +C3N-05100.RNA-Seq.R1_L002.T C3N-05100 LSCC RNA-Seq tumor CPT0321680009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGTACCTT-AAGACGTC_S5_L002_R1_001.fastq.gz 3707066529 FASTQ R1_L002 unaligned CPTAC3 94e80fa3-c4d8-4da0-97e7-da399c4939a1 d1815b8fb5167b5a84f3678434acaee4 { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-05100.RNA-Seq.R2_L002.T C3N-05100 LSCC RNA-Seq tumor CPT0321680009 200428_UNC31-K00269_0276_BHH5TMBBXY_GGTACCTT-AAGACGTC_S5_L002_R2_001.fastq.gz 4036803940 FASTQ R2_L002 unaligned CPTAC3 b2c5daa7-707a-4c87-bf16-6b740134c2d1 f045608be98f734a412867a6c1c2c96a { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-05100.RNA-Seq.transcriptome.T.hg38 C3N-05100 LSCC RNA-Seq tumor CPT0321680009 f9bb6299-0989-4067-bb91-76534af83fb1.rna_seq.transcriptome.gdc_realn.bam 11720859979 BAM transcriptome harmonized CPTAC3 91b41102-cdb5-4de7-b897-0324ba85eed4 71de4ce1be44b01dbfc3f8b6bfff5cc4 { 'aliquot_tag': 'ALQ_5aed7fb9', 'gdc_sample_type': 'Primary Tumor' } C3N-05100.WGS.N C3N-05100 LSCC WGS blood_normal CPT0321700002 CPT0321700002.WholeGenome.RP-2158.bam 21048768435 BAM aligned CPTAC3 c101d28b-617b-4116-9e7a-fd62285e618c a11eb31e2ab754c9d7d9a06e58ec231f { 'aliquot_tag': 'ALQ_36133e55', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05100.WGS.N.hg38 C3N-05100 LSCC WGS blood_normal CPT0321700002 39264da6-4d0b-43d6-acb1-0bbfa21ffd9e_wgs_gdc_realn.bam 62286351996 BAM harmonized CPTAC3 b8b94e9d-6a7a-4761-8bdc-bff67dd8fb8f d84c0504175233379452d1717621ef46 { 'aliquot_tag': 'ALQ_36133e55', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05100.WGS.T C3N-05100 LSCC WGS tumor CPT0321680006 CPT0321680006.WholeGenome.RP-2158.bam 19457716420 BAM aligned CPTAC3 9d0e5861-56dd-4a2f-9116-5b46bca16e5a 9fa589440659bfbc2af17a9bedc8624b { 'aliquot_tag': 'ALQ_ca526228', 'gdc_sample_type': 'Primary Tumor' } @@ -38386,11 +40820,11 @@ C3N-05114.MethArray.Green.T C3N-05114 GBM Methylation Array tumor CPT0375840007 C3N-05114.MethArray.Red.T C3N-05114 GBM Methylation Array tumor CPT0375840007 204930640011_R08C01_Red.idat 13677900 IDAT Red NA CPTAC3 586fbbda-3b4b-408b-866b-3580f9ae5566 d805011d60c2a087189977be59e8b37a { 'aliquot_tag': 'ALQ_fe00f4b8', 'gdc_sample_type': 'Primary Tumor' } C3N-05114.miRNA-Seq.T C3N-05114 GBM miRNA-Seq tumor CPT0375840010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGAGC_S3_L006_R1_001.unaln.bam 238207174 BAM unaligned CPTAC3 b607ed44-4dd4-4dbe-9e3a-6053a2daf518 46edec62acab3aa914eb6356b98a11b0 { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor' } C3N-05114.miRNA-Seq.T.hg38 C3N-05114 GBM miRNA-Seq tumor CPT0375840010 36569e13-7688-4fce-8fd0-4d0cedb599b3_mirnaseq_gdc_realn.bam 266581230 BAM harmonized CPTAC3 a8655809-53a8-4e3e-8f82-1f31ad01e9b8 5ab56f1b64ab8cdbb0d37b1e132346b8 { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor' } -C3N-05114.RNA-Seq.chimeric.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 a6c1bf60-b285-4f97-aa77-717232cf0af1.rna_seq.chimeric.gdc_realn.bam 382193505 BAM chimeric harmonized CPTAC3 daeb987f-ea05-401c-a93f-a60e9d3905d7 4bd92111c1215c9d2d93e239b08c65dc { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor' } -C3N-05114.RNA-Seq.genomic.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 a6c1bf60-b285-4f97-aa77-717232cf0af1.rna_seq.genomic.gdc_realn.bam 7575656426 BAM genomic harmonized CPTAC3 57c00592-8859-417e-8ce8-cfda50845047 7b22bb6eb4936057643358633775082f { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor' } -C3N-05114.RNA-Seq.R1_L004.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R1_001.fastq.gz 3709732833 FASTQ R1_L004 unaligned CPTAC3 0a01510e-f773-49bb-b942-ed13ac1e72a2 7ccb79cf4feb43cb7a11de2c17862a64 { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor' } -C3N-05114.RNA-Seq.R2_L004.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R2_001.fastq.gz 4060729232 FASTQ R2_L004 unaligned CPTAC3 23d53980-2023-4c74-bb48-ff2282011226 6809a81e2988793b41f3ec0b1f4cf963 { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor' } -C3N-05114.RNA-Seq.transcriptome.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 a6c1bf60-b285-4f97-aa77-717232cf0af1.rna_seq.transcriptome.gdc_realn.bam 10033628893 BAM transcriptome harmonized CPTAC3 cd738c27-65f4-4d5c-b358-c4068d7f2188 aa67f3c940c8a0fc2991f14191675c39 { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor' } +C3N-05114.RNA-Seq.chimeric.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 b8975a21-cacf-4df2-bdf2-40ac859d84a2.rna_seq.chimeric.gdc_realn.bam 382265048 BAM chimeric harmonized CPTAC3 fe01c20a-8021-4b17-a2b5-4bac8c2294e8 eae251992eb1dd60af52c918d2da9108 { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor' } +C3N-05114.RNA-Seq.genomic.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 b8975a21-cacf-4df2-bdf2-40ac859d84a2.rna_seq.genomic.gdc_realn.bam 7585267874 BAM genomic harmonized CPTAC3 1c395db0-995b-4a65-93f0-026b54b12aaa d4deff61e01f8985e04a8a59850be894 { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor' } +C3N-05114.RNA-Seq.R1_L004.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R1_001.fastq.gz 3709732833 FASTQ R1_L004 unaligned CPTAC3 0a01510e-f773-49bb-b942-ed13ac1e72a2 7ccb79cf4feb43cb7a11de2c17862a64 { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-05114.RNA-Seq.R2_L004.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R2_001.fastq.gz 4060729232 FASTQ R2_L004 unaligned CPTAC3 23d53980-2023-4c74-bb48-ff2282011226 6809a81e2988793b41f3ec0b1f4cf963 { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-05114.RNA-Seq.transcriptome.T.hg38 C3N-05114 GBM RNA-Seq tumor CPT0375840010 b8975a21-cacf-4df2-bdf2-40ac859d84a2.rna_seq.transcriptome.gdc_realn.bam 11492121319 BAM transcriptome harmonized CPTAC3 a4886476-606d-494e-a7b6-e6d4f87ae822 f353f4ed16c2cec7620b6cf453463ae4 { 'aliquot_tag': 'ALQ_797f505a', 'gdc_sample_type': 'Primary Tumor' } C3N-05114.WGS.N C3N-05114 GBM WGS blood_normal CPT0375900002 CPT0375900002.WholeGenome.RP-2158.bam 23591039617 BAM aligned CPTAC3 38162097-8649-4ff4-b8c4-c53b803608a5 ffaa27d9cfbcf74be380a13bcf015b81 { 'aliquot_tag': 'ALQ_b0b67552', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05114.WGS.N.hg38 C3N-05114 GBM WGS blood_normal CPT0375900002 e8446ae9-fcf6-48e3-8073-0b0ba6396588_wgs_gdc_realn.bam 69989761070 BAM harmonized CPTAC3 ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae c8a12e347e6a8c8d117f11f16ae325e0 { 'aliquot_tag': 'ALQ_b0b67552', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05114.WGS.T C3N-05114 GBM WGS tumor CPT0375840007 CPT0375840007.WholeGenome.RP-2158.bam 29844175746 BAM aligned CPTAC3 0d57def0-92d4-4b0f-8e0b-a73387c3674b 38179ed8709560da2a7c0f0b1d4e1139 { 'aliquot_tag': 'ALQ_fe00f4b8', 'gdc_sample_type': 'Primary Tumor' } @@ -38403,11 +40837,11 @@ C3N-05135.MethArray.Green.T C3N-05135 GBM Methylation Array tumor CPT0376380005 C3N-05135.MethArray.Red.T C3N-05135 GBM Methylation Array tumor CPT0376380005 204930640064_R08C01_Red.idat 13677885 IDAT Red NA CPTAC3 79b850bd-e2d2-4036-8c50-d93460a66c95 fb9822ceea3e307aca9050d6df6d88b6 { 'aliquot_tag': 'ALQ_8ed192cb', 'gdc_sample_type': 'Primary Tumor' } C3N-05135.miRNA-Seq.T C3N-05135 GBM miRNA-Seq tumor CPT0376380009 201209_UNC32-K00270_0265_AHJ55WBBXY_ATTCCT_S4_L007_R1_001.unaln.bam 212589586 BAM unaligned CPTAC3 42853fb5-69b7-4547-8a07-662ee45a6ff1 9ec463c4505a174611276ec332863211 { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor' } C3N-05135.miRNA-Seq.T.hg38 C3N-05135 GBM miRNA-Seq tumor CPT0376380009 61831f48-b9d2-418c-83e1-abccebef1bc5_mirnaseq_gdc_realn.bam 236078424 BAM harmonized CPTAC3 3280de74-19ac-4d09-b76b-63377904592e a22c6d823d26b91d176f0c936405138d { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05135.RNA-Seq.chimeric.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 50ad93ec-ffaa-40b8-8681-426d14a934dc.rna_seq.chimeric.gdc_realn.bam 646749898 BAM chimeric harmonized CPTAC3 504e657a-358e-471e-a720-d896872a9bb5 88e160d44c45cd384232b17bdba21802 { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05135.RNA-Seq.genomic.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 50ad93ec-ffaa-40b8-8681-426d14a934dc.rna_seq.genomic.gdc_realn.bam 7831052761 BAM genomic harmonized CPTAC3 8bc2cff2-bad5-4f1a-a690-a15cd20bbb98 e42b41068d90849e0f71cd14a4f4b3f3 { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05135.RNA-Seq.R1_L004.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R1_001.fastq.gz 3712731109 FASTQ R1_L004 unaligned CPTAC3 f923cf94-4f61-4f33-8cab-5328f7853280 d2d92fa1c53cb23b60d1b41b5d4dbed5 { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05135.RNA-Seq.R2_L004.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R2_001.fastq.gz 4163557208 FASTQ R2_L004 unaligned CPTAC3 bba10325-9b48-47e2-8983-b3687f010e06 3466d03aec58e9bb0ce0a17601332f9a { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05135.RNA-Seq.transcriptome.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 50ad93ec-ffaa-40b8-8681-426d14a934dc.rna_seq.transcriptome.gdc_realn.bam 7167337730 BAM transcriptome harmonized CPTAC3 1db5d39d-c945-4f5f-b990-95300e074e42 ee33d1c2c44fe6d0ddc4f048681a1cd1 { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor' } +C3N-05135.RNA-Seq.chimeric.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 4626c11e-e217-483c-94b2-7000f3afe2f6.rna_seq.chimeric.gdc_realn.bam 646868456 BAM chimeric harmonized CPTAC3 d30d77cb-a85d-4617-9207-ddf50e849c3c f45692ba8f60948bf6488501860423a7 { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor' } +C3N-05135.RNA-Seq.genomic.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 4626c11e-e217-483c-94b2-7000f3afe2f6.rna_seq.genomic.gdc_realn.bam 7837920975 BAM genomic harmonized CPTAC3 ca7e72d4-c212-400f-b47d-735fd40e4dce 606e6785bdc6eb6a37d9ef10cc3cf94a { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor' } +C3N-05135.RNA-Seq.R1_L004.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R1_001.fastq.gz 3712731109 FASTQ R1_L004 unaligned CPTAC3 f923cf94-4f61-4f33-8cab-5328f7853280 d2d92fa1c53cb23b60d1b41b5d4dbed5 { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L004' } +C3N-05135.RNA-Seq.R2_L004.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R2_001.fastq.gz 4163557208 FASTQ R2_L004 unaligned CPTAC3 bba10325-9b48-47e2-8983-b3687f010e06 3466d03aec58e9bb0ce0a17601332f9a { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L004' } +C3N-05135.RNA-Seq.transcriptome.T.hg38 C3N-05135 GBM RNA-Seq tumor CPT0376380009 4626c11e-e217-483c-94b2-7000f3afe2f6.rna_seq.transcriptome.gdc_realn.bam 8284987096 BAM transcriptome harmonized CPTAC3 c317bbb9-01b9-4c01-843c-7a51dd57309e f5bfa0259dfa1478081006723ba7ea8c { 'aliquot_tag': 'ALQ_8767dee0', 'gdc_sample_type': 'Primary Tumor' } C3N-05135.WGS.N C3N-05135 GBM WGS blood_normal CPT0376440002 CPT0376440002.WholeGenome.RP-2158.bam 23324063857 BAM aligned CPTAC3 645e182c-a2ad-4329-8e06-7b7798b1b827 9e38921d6dae8efa715300066372cefb { 'aliquot_tag': 'ALQ_c840dad1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05135.WGS.N.hg38 C3N-05135 GBM WGS blood_normal CPT0376440002 d69369cc-a994-4e4f-af13-4948398b347b_wgs_gdc_realn.bam 68301546626 BAM harmonized CPTAC3 5dc48332-6ed2-417b-958f-c1595135fa9e fb78af873c3353c51b4c3adffe081ec9 { 'aliquot_tag': 'ALQ_c840dad1', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05135.WGS.T C3N-05135 GBM WGS tumor CPT0376380005 CPT0376380005.WholeGenome.RP-2158.bam 26465673099 BAM aligned CPTAC3 bcb1ec0a-99ac-4ca9-961a-4b5ab271f384 4c2676dd4e90a86bdfd2aba23a19a69a { 'aliquot_tag': 'ALQ_8ed192cb', 'gdc_sample_type': 'Primary Tumor' } @@ -38424,16 +40858,16 @@ C3N-05629.miRNA-Seq.A C3N-05629 LSCC miRNA-Seq tissue_normal CPT0321770009 20032 C3N-05629.miRNA-Seq.A.hg38 C3N-05629 LSCC miRNA-Seq tissue_normal CPT0321770009 b2973002-6eba-4812-8ab4-d07288040c7f_mirnaseq_gdc_realn.bam 286232027 BAM harmonized CPTAC3 93aff772-d665-49d9-9065-0e34c106c1f2 be634416488ca5d3192b5af9a04a9660 { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-05629.miRNA-Seq.T C3N-05629 LSCC miRNA-Seq tumor CPT0321760009 200224_UNC31-K00269_0267_AHC722BBXY_CGTACG_S22_L008_R1_001.unaln.bam 173798048 BAM unaligned CPTAC3 5514129f-9993-4002-83a2-ddeeeed401d7 ef606d3f015f18f809c0de4d154e4c64 { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor' } C3N-05629.miRNA-Seq.T.hg38 C3N-05629 LSCC miRNA-Seq tumor CPT0321760009 1028ebdd-8b23-4022-9c09-5bebcf3c748c_mirnaseq_gdc_realn.bam 198771303 BAM harmonized CPTAC3 a4946480-8392-418f-af8b-807af46b7059 f0176290212ef0c1f4b3360101f04243 { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor' } -C3N-05629.RNA-Seq.chimeric.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 d05c9d1a-61f8-4b32-974f-f551874c8d35.rna_seq.chimeric.gdc_realn.bam 138690971 BAM chimeric harmonized CPTAC3 e1f6ef9f-19ff-4d5c-ae01-3cfcab3a181d cc020c8d8e8da50f66c838457155faa0 { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05629.RNA-Seq.chimeric.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 11cb357a-0777-45a4-af66-2897cd581f25.rna_seq.chimeric.gdc_realn.bam 21174931 BAM chimeric harmonized CPTAC3 b4910c94-5e49-41c1-b9fc-0321d7158d99 1fd0957cba9c2f09b0e9cb5fdc95491d { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor' } -C3N-05629.RNA-Seq.genomic.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 d05c9d1a-61f8-4b32-974f-f551874c8d35.rna_seq.genomic.gdc_realn.bam 7593268718 BAM genomic harmonized CPTAC3 13c74851-5e66-4887-b68e-dc8ee7812414 091c43370f7bb188ce603f6917fea4ca { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05629.RNA-Seq.genomic.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 11cb357a-0777-45a4-af66-2897cd581f25.rna_seq.genomic.gdc_realn.bam 5104037904 BAM genomic harmonized CPTAC3 61169c64-de08-4fe0-bd77-764dd4e23aea 583bfe6903ded76670ffba98a6e2f0ba { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor' } -C3N-05629.RNA-Seq.R1_L002.T C3N-05629 LSCC RNA-Seq tumor CPT0321760009 200428_UNC31-K00269_0276_BHH5TMBBXY_AACGTTCC-GGAGTACT_S6_L002_R1_001.fastq.gz 2467086846 FASTQ R1_L002 unaligned CPTAC3 7f49c621-13e9-4e66-90e3-afc5545d86de de49766cbe860c648571c50083ee6fd3 { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor' } -C3N-05629.RNA-Seq.R1_L005.A C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GGTCACGA-GTATTATG_S18_L005_R1_001.fastq.gz 3782320688 FASTQ R1_L005 unaligned CPTAC3 1a8f0eef-c9ac-4a60-bb7f-d7898d725906 a062246f5bc7b5accf678c4f7a64e6bf { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05629.RNA-Seq.R2_L002.T C3N-05629 LSCC RNA-Seq tumor CPT0321760009 200428_UNC31-K00269_0276_BHH5TMBBXY_AACGTTCC-GGAGTACT_S6_L002_R2_001.fastq.gz 2680135041 FASTQ R2_L002 unaligned CPTAC3 8da05c95-0d72-4ac1-84f7-439baa0626f7 792bb14235051c7cc28529648f2e0c67 { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor' } -C3N-05629.RNA-Seq.R2_L005.A C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GGTCACGA-GTATTATG_S18_L005_R2_001.fastq.gz 3985887125 FASTQ R2_L005 unaligned CPTAC3 720bf299-c055-4193-98ef-eb0a651454bc 374a2a135288bb590ec601cb6dd22e81 { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05629.RNA-Seq.transcriptome.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 d05c9d1a-61f8-4b32-974f-f551874c8d35.rna_seq.transcriptome.gdc_realn.bam 8650230836 BAM transcriptome harmonized CPTAC3 07196d8f-e10c-4777-8ae8-5286d84496e1 81e25bf8ac77b2c0de5a2aa5e9af6ba2 { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05629.RNA-Seq.transcriptome.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 11cb357a-0777-45a4-af66-2897cd581f25.rna_seq.transcriptome.gdc_realn.bam 6623025458 BAM transcriptome harmonized CPTAC3 4eccf2d3-2080-4b19-97f3-b939f0585b76 1c0c22a4edc13f9778a59c74a0147dd7 { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor' } +C3N-05629.RNA-Seq.chimeric.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 fdf62937-c1de-4dc0-9f65-4f626cd60b28.rna_seq.chimeric.gdc_realn.bam 138675380 BAM chimeric harmonized CPTAC3 98cf8e88-ce0f-425b-8b68-ffe0fcf16479 864d42f073f6146746196732fec44326 { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05629.RNA-Seq.chimeric.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 54655ba2-e9ec-4e22-a88e-e2da2eb32e4e.rna_seq.chimeric.gdc_realn.bam 21157110 BAM chimeric harmonized CPTAC3 13a5856e-dbf1-473b-986c-b04505db208f b279b4c3753880630ac380e13ee4b200 { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor' } +C3N-05629.RNA-Seq.genomic.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 fdf62937-c1de-4dc0-9f65-4f626cd60b28.rna_seq.genomic.gdc_realn.bam 7593938163 BAM genomic harmonized CPTAC3 c5d4328f-15dc-4c1e-8ee3-b2e283ba4016 4d6ecc20d95cc5cf8855bd5bfa1dbafd { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05629.RNA-Seq.genomic.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 54655ba2-e9ec-4e22-a88e-e2da2eb32e4e.rna_seq.genomic.gdc_realn.bam 5104897290 BAM genomic harmonized CPTAC3 d253e112-22d6-4668-8263-14ee9d20b286 5da48197bf58e3beb7ae96bc91534dcf { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor' } +C3N-05629.RNA-Seq.R1_L002.T C3N-05629 LSCC RNA-Seq tumor CPT0321760009 200428_UNC31-K00269_0276_BHH5TMBBXY_AACGTTCC-GGAGTACT_S6_L002_R1_001.fastq.gz 2467086846 FASTQ R1_L002 unaligned CPTAC3 7f49c621-13e9-4e66-90e3-afc5545d86de de49766cbe860c648571c50083ee6fd3 { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-05629.RNA-Seq.R1_L005.A C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GGTCACGA-GTATTATG_S18_L005_R1_001.fastq.gz 3782320688 FASTQ R1_L005 unaligned CPTAC3 1a8f0eef-c9ac-4a60-bb7f-d7898d725906 a062246f5bc7b5accf678c4f7a64e6bf { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-05629.RNA-Seq.R2_L002.T C3N-05629 LSCC RNA-Seq tumor CPT0321760009 200428_UNC31-K00269_0276_BHH5TMBBXY_AACGTTCC-GGAGTACT_S6_L002_R2_001.fastq.gz 2680135041 FASTQ R2_L002 unaligned CPTAC3 8da05c95-0d72-4ac1-84f7-439baa0626f7 792bb14235051c7cc28529648f2e0c67 { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-05629.RNA-Seq.R2_L005.A C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 200428_UNC31-K00269_0275_AHGCJVBBXY_GGTCACGA-GTATTATG_S18_L005_R2_001.fastq.gz 3985887125 FASTQ R2_L005 unaligned CPTAC3 720bf299-c055-4193-98ef-eb0a651454bc 374a2a135288bb590ec601cb6dd22e81 { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-05629.RNA-Seq.transcriptome.A.hg38 C3N-05629 LSCC RNA-Seq tissue_normal CPT0321770009 fdf62937-c1de-4dc0-9f65-4f626cd60b28.rna_seq.transcriptome.gdc_realn.bam 9859804329 BAM transcriptome harmonized CPTAC3 688c0d05-523c-4e6d-ab35-b53a434ac188 9865a5c4ce5b7ea5c7d6e8b0b0190bd0 { 'aliquot_tag': 'ALQ_13e13bcd', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05629.RNA-Seq.transcriptome.T.hg38 C3N-05629 LSCC RNA-Seq tumor CPT0321760009 54655ba2-e9ec-4e22-a88e-e2da2eb32e4e.rna_seq.transcriptome.gdc_realn.bam 7492736514 BAM transcriptome harmonized CPTAC3 a241bd02-8323-45bf-b45d-3cf23e06568d ed83d7345ee7fd47fe625af5947a768b { 'aliquot_tag': 'ALQ_2e81127d', 'gdc_sample_type': 'Primary Tumor' } C3N-05629.WGS.N C3N-05629 LSCC WGS blood_normal CPT0321800002 CPT0321800002.WholeGenome.RP-2158.bam 25902474734 BAM aligned CPTAC3 b584ba5a-f4cf-45db-a416-bde48302c251 2c9e475210c1fc1695d7e8a9dcec44ad { 'aliquot_tag': 'ALQ_c7458c80', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05629.WGS.N.hg38 C3N-05629 LSCC WGS blood_normal CPT0321800002 52e2a19b-f6a8-4484-86b7-fed2cb4438e9_wgs_gdc_realn.bam 75748276047 BAM harmonized CPTAC3 f50609fc-9226-4f82-a225-48e4491d6e1a 9a6061f78f38ceb4c5d5eb36dbd2da82 { 'aliquot_tag': 'ALQ_c7458c80', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05629.WGS.T C3N-05629 LSCC WGS tumor CPT0321760006 CPT0321760006.WholeGenome.RP-2158.bam 21989426422 BAM aligned CPTAC3 05d48fce-fcee-410e-a1c2-1eee0b197061 4f4736a09da0381d54c31b059942db96 { 'aliquot_tag': 'ALQ_be3e0fec', 'gdc_sample_type': 'Primary Tumor' } @@ -38452,16 +40886,16 @@ C3N-05911.miRNA-Seq.A C3N-05911 LSCC miRNA-Seq tissue_normal CPT0321870009 20120 C3N-05911.miRNA-Seq.A.hg38 C3N-05911 LSCC miRNA-Seq tissue_normal CPT0321870009 8bbcbd7c-552f-4614-beb1-784a612d7a45_mirnaseq_gdc_realn.bam 229055485 BAM harmonized CPTAC3 47330cbc-de15-4de1-8354-2b54d3874d3c c9b363256874422940d5b30522885544 { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-05911.miRNA-Seq.T C3N-05911 LSCC miRNA-Seq tumor CPT0384280009 201209_UNC32-K00270_0265_AHJ55WBBXY_AGTCAA_S24_L007_R1_001.unaln.bam 335161236 BAM unaligned CPTAC3 50689b11-63be-4b1b-aa4e-0bc0c1cbb938 44d4de901708dbca725a4c31f0c14135 { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor' } C3N-05911.miRNA-Seq.T.hg38 C3N-05911 LSCC miRNA-Seq tumor CPT0384280009 982cb22a-ef85-47bb-ac67-3681731e6110_mirnaseq_gdc_realn.bam 359864120 BAM harmonized CPTAC3 cef06ca3-dc8e-4834-b757-e323a3abada9 a46f78f678929cac2590fec4db3d97e1 { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05911.RNA-Seq.chimeric.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.chimeric.gdc_realn.bam 430945174 BAM chimeric harmonized CPTAC3 fd457577-d86b-43ab-81ba-8a8bfe6bf28c 55e695332cec1440bf2e6e4d8473dbd2 { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05911.RNA-Seq.chimeric.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.chimeric.gdc_realn.bam 348072812 BAM chimeric harmonized CPTAC3 ef9e948e-b96e-4c7f-a527-3aedab670897 898c44bc83b274658910780a9ac42dbb { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05911.RNA-Seq.genomic.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.genomic.gdc_realn.bam 10513969798 BAM genomic harmonized CPTAC3 3e31edf8-9755-470f-9baa-d47207876dca 6cb75c3ddacdf33d87d0f64d897003ff { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05911.RNA-Seq.genomic.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.genomic.gdc_realn.bam 6768653975 BAM genomic harmonized CPTAC3 71263301-3c68-4ba8-b9a4-916e685587ce 739a37a3712dcc62665680df39b43bed { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05911.RNA-Seq.R1_L001.T C3N-05911 LSCC RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R1_001.fastq.gz 3359173562 FASTQ R1_L001 unaligned CPTAC3 55b515c6-94b3-498d-976f-9dc0d115a9d1 ab60cee05725e8724e68252437511497 { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05911.RNA-Seq.R1_L002.A C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 5346921141 FASTQ R1_L002 unaligned CPTAC3 a0f2d25e-3679-4976-a59f-b73553463131 5d56182edf28334b2142d3262555ea1c { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05911.RNA-Seq.R2_L001.T C3N-05911 LSCC RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R2_001.fastq.gz 3854658963 FASTQ R2_L001 unaligned CPTAC3 7a0defb3-5e5d-44b1-9180-9fef6f7a98a7 8b1429a749546721cfbee833ca1a4d6d { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor' } -C3N-05911.RNA-Seq.R2_L002.A C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 6015069834 FASTQ R2_L002 unaligned CPTAC3 5e575152-25ec-41df-b95a-d44c63fb4774 3072700083ecfb0a0039345d0c3ad1b7 { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05911.RNA-Seq.transcriptome.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 2b42bc5a-947a-406b-ac08-f87e1cb54f89.rna_seq.transcriptome.gdc_realn.bam 12383098108 BAM transcriptome harmonized CPTAC3 2697aa4c-c744-425f-bcf2-726c5ecbac48 3372397ca905a1f828a956eff9333174 { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05911.RNA-Seq.transcriptome.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 755a407e-3556-49b7-9783-265d7b1f4af6.rna_seq.transcriptome.gdc_realn.bam 10776331017 BAM transcriptome harmonized CPTAC3 d83b7d15-a641-48c2-aa9c-f1d5c270befd 4aff046bcd49e6d61adb39a976f033ab { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor' } +C3N-05911.RNA-Seq.chimeric.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 7f61d900-7445-4668-846f-321545b324b7.rna_seq.chimeric.gdc_realn.bam 431008863 BAM chimeric harmonized CPTAC3 b5aedd37-216f-4914-b920-e28be9faaba0 18fbde517880a9263748b07f104a4725 { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05911.RNA-Seq.chimeric.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 7735b1ed-6add-478e-95ed-cbff4e658fc9.rna_seq.chimeric.gdc_realn.bam 348158223 BAM chimeric harmonized CPTAC3 1d8c14b3-fc56-475d-884d-ac9fc9cc0590 3dadb17d4350c32c0600c8d9d041fbd2 { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor' } +C3N-05911.RNA-Seq.genomic.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 7f61d900-7445-4668-846f-321545b324b7.rna_seq.genomic.gdc_realn.bam 10520732225 BAM genomic harmonized CPTAC3 9df5e8d2-2149-4f64-bda1-448835f49feb 5ef008a620c785764273c4a16b11aa1f { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05911.RNA-Seq.genomic.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 7735b1ed-6add-478e-95ed-cbff4e658fc9.rna_seq.genomic.gdc_realn.bam 6778537793 BAM genomic harmonized CPTAC3 2f380c4a-a557-4be3-89cc-cf3bfc986c79 60e370d9dcf9de802a1ab32e09b63c9b { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor' } +C3N-05911.RNA-Seq.R1_L001.T C3N-05911 LSCC RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R1_001.fastq.gz 3359173562 FASTQ R1_L001 unaligned CPTAC3 55b515c6-94b3-498d-976f-9dc0d115a9d1 ab60cee05725e8724e68252437511497 { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C3N-05911.RNA-Seq.R1_L002.A C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R1_001.fastq.gz 5346921141 FASTQ R1_L002 unaligned CPTAC3 a0f2d25e-3679-4976-a59f-b73553463131 5d56182edf28334b2142d3262555ea1c { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L002' } +C3N-05911.RNA-Seq.R2_L001.T C3N-05911 LSCC RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R2_001.fastq.gz 3854658963 FASTQ R2_L001 unaligned CPTAC3 7a0defb3-5e5d-44b1-9180-9fef6f7a98a7 8b1429a749546721cfbee833ca1a4d6d { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C3N-05911.RNA-Seq.R2_L002.A C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 6015069834 FASTQ R2_L002 unaligned CPTAC3 5e575152-25ec-41df-b95a-d44c63fb4774 3072700083ecfb0a0039345d0c3ad1b7 { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L002' } +C3N-05911.RNA-Seq.transcriptome.A.hg38 C3N-05911 LSCC RNA-Seq tissue_normal CPT0321870009 7f61d900-7445-4668-846f-321545b324b7.rna_seq.transcriptome.gdc_realn.bam 14060414532 BAM transcriptome harmonized CPTAC3 53b33e29-fa56-4557-9429-367a8244e238 9a34daeb90a2a84bef8c37f161a9f6a7 { 'aliquot_tag': 'ALQ_e2b78918', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05911.RNA-Seq.transcriptome.T.hg38 C3N-05911 LSCC RNA-Seq tumor CPT0384280009 7735b1ed-6add-478e-95ed-cbff4e658fc9.rna_seq.transcriptome.gdc_realn.bam 12220646917 BAM transcriptome harmonized CPTAC3 7a679205-3909-4152-9e18-ee23ce3e32cf 9f59655ba10889672857b945da48e9ac { 'aliquot_tag': 'ALQ_2840ec0', 'gdc_sample_type': 'Primary Tumor' } C3N-05911.WGS.N C3N-05911 LSCC WGS blood_normal CPT0321900002 CPT0321900002.WholeGenome.RP-2158.bam 25580109842 BAM aligned CPTAC3 8add1311-5ba7-4fa2-8591-ef551f8ea960 d061d6989aa02ee2496acc890a65d836 { 'aliquot_tag': 'ALQ_c195f25', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05911.WGS.N.hg38 C3N-05911 LSCC WGS blood_normal CPT0321900002 03bad097-34d3-4e30-ad80-825f378201a6_wgs_gdc_realn.bam 76481181886 BAM harmonized CPTAC3 f9f9435b-e4de-4034-90ef-6bc10e3ec92f 29e91ba7f23f27e64706e93083be9ddf { 'aliquot_tag': 'ALQ_c195f25', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05911.WGS.T C3N-05911 LSCC WGS tumor CPT0384280006 CPT0384280006.WholeGenome.RP-2158.bam 23760701955 BAM aligned CPTAC3 4b245764-6fae-4ee4-8f8a-5ea6a7da4a7f 6d6be5a3643206b7ea437f2390ebf2d5 { 'aliquot_tag': 'ALQ_923b1351', 'gdc_sample_type': 'Primary Tumor' } @@ -38480,16 +40914,16 @@ C3N-05914.miRNA-Seq.A C3N-05914 LSCC miRNA-Seq tissue_normal CPT0322020009 20032 C3N-05914.miRNA-Seq.A.hg38 C3N-05914 LSCC miRNA-Seq tissue_normal CPT0322020009 1d7e1bbf-cfaa-4c41-a5aa-9421e23a7bb4_mirnaseq_gdc_realn.bam 280267722 BAM harmonized CPTAC3 80f93150-ede2-4400-ad96-b084ef83c68b b15e69eb9b1878a44291cc74cbfc24a2 { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-05914.miRNA-Seq.T C3N-05914 LSCC miRNA-Seq tumor CPT0322010009 200224_UNC31-K00269_0267_AHC722BBXY_GAGTGG_S23_L008_R1_001.unaln.bam 198641139 BAM unaligned CPTAC3 3e90ad97-3e9f-4f35-b740-8dffbed311e6 b7f82613524d32ae6ab63b4377483c0e { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor' } C3N-05914.miRNA-Seq.T.hg38 C3N-05914 LSCC miRNA-Seq tumor CPT0322010009 62f8f709-a6e7-4603-b9c3-30bd40db2b18_mirnaseq_gdc_realn.bam 221125816 BAM harmonized CPTAC3 82538b6f-3a7c-4ff6-90f8-d353d6c692a6 04a019c5d388f33d5ba33c10eae93d93 { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor' } -C3N-05914.RNA-Seq.chimeric.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 3f0e0c62-930e-42c5-b528-bce8f31c4b1b.rna_seq.chimeric.gdc_realn.bam 92178702 BAM chimeric harmonized CPTAC3 b125a200-63b4-4c9a-9005-cc9b1de121c2 863f3edacceea1f3f993e29f046f4882 { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05914.RNA-Seq.chimeric.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 c358b7fc-ca70-431e-8936-c3d9cbdace5b.rna_seq.chimeric.gdc_realn.bam 51184900 BAM chimeric harmonized CPTAC3 f414f104-c6e0-4433-95d2-8066cbc2afd4 afda5fd0bf71959dea1e7c64c1f76d04 { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor' } -C3N-05914.RNA-Seq.genomic.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 3f0e0c62-930e-42c5-b528-bce8f31c4b1b.rna_seq.genomic.gdc_realn.bam 6935675395 BAM genomic harmonized CPTAC3 d0c1e53b-5146-42a9-a646-f9fe8a51c863 19487a7f017df269efabe7d2ced5cb18 { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05914.RNA-Seq.genomic.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 c358b7fc-ca70-431e-8936-c3d9cbdace5b.rna_seq.genomic.gdc_realn.bam 10905623553 BAM genomic harmonized CPTAC3 4c2a1fd8-fb25-4b1d-9736-38e75f10b496 88ba71a47b299059ead2b9f17b0fcfd2 { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor' } -C3N-05914.RNA-Seq.R1_L002.T C3N-05914 LSCC RNA-Seq tumor CPT0322010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCAGAATT-ACCGGCCA_S7_L002_R1_001.fastq.gz 5267685992 FASTQ R1_L002 unaligned CPTAC3 42619f5f-391a-4775-a515-1b5714a90f1b 42e685f48158091e501cd860d394ce0b { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor' } -C3N-05914.RNA-Seq.R1_L005.A C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTGCTTCC-GATAGATC_S19_L005_R1_001.fastq.gz 3400862397 FASTQ R1_L005 unaligned CPTAC3 58847338-77fa-4225-ae9a-d7cabe9abcc3 cd894b5a439454dc9fe082165420865d { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05914.RNA-Seq.R2_L002.T C3N-05914 LSCC RNA-Seq tumor CPT0322010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCAGAATT-ACCGGCCA_S7_L002_R2_001.fastq.gz 5750197657 FASTQ R2_L002 unaligned CPTAC3 3931c065-87df-472d-9583-a9be46390ee2 9d1cb10fc438db736a910c8425929c5f { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor' } -C3N-05914.RNA-Seq.R2_L005.A C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTGCTTCC-GATAGATC_S19_L005_R2_001.fastq.gz 3556116993 FASTQ R2_L005 unaligned CPTAC3 a2209efe-30e2-43b0-88d0-736412de5aaa a1133fdf11e9e86422bd6148babb595c { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05914.RNA-Seq.transcriptome.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 3f0e0c62-930e-42c5-b528-bce8f31c4b1b.rna_seq.transcriptome.gdc_realn.bam 8826114955 BAM transcriptome harmonized CPTAC3 295dc3b1-e863-4db1-8b1f-41653033460f a3d2419a26de3677e55ffa6c89a8974f { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05914.RNA-Seq.transcriptome.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 c358b7fc-ca70-431e-8936-c3d9cbdace5b.rna_seq.transcriptome.gdc_realn.bam 12317300440 BAM transcriptome harmonized CPTAC3 69422d0c-92dc-41f5-9c26-00c4b72991c5 59cbda3c9678cc162c64c8ab4a3b1329 { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor' } +C3N-05914.RNA-Seq.chimeric.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 e07f663b-dab8-49c1-b52e-383bfa7228ad.rna_seq.chimeric.gdc_realn.bam 92153015 BAM chimeric harmonized CPTAC3 4b6d974b-c7cd-4a22-b08a-eb378dcd612e f5d99ca424e82a71047a27d3fbbf0818 { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05914.RNA-Seq.chimeric.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 e7126500-83b9-43f5-91ed-8f714c16f6ab.rna_seq.chimeric.gdc_realn.bam 51184185 BAM chimeric harmonized CPTAC3 0efb96f4-6376-46ff-9339-e72bb6d8e355 b5544c4a6f324dae1c503dca7273cb16 { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor' } +C3N-05914.RNA-Seq.genomic.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 e07f663b-dab8-49c1-b52e-383bfa7228ad.rna_seq.genomic.gdc_realn.bam 6937340639 BAM genomic harmonized CPTAC3 ea140e7b-bbb9-45cf-bd32-7cdbafc81b64 db4b851e0c32c5108dd3eb0c6b36747d { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05914.RNA-Seq.genomic.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 e7126500-83b9-43f5-91ed-8f714c16f6ab.rna_seq.genomic.gdc_realn.bam 10907929736 BAM genomic harmonized CPTAC3 f147d42e-11a3-4081-a0c4-62f6e1726f9e ebfa067ad466bb9ab2c60ad33ec756dc { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor' } +C3N-05914.RNA-Seq.R1_L002.T C3N-05914 LSCC RNA-Seq tumor CPT0322010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCAGAATT-ACCGGCCA_S7_L002_R1_001.fastq.gz 5267685992 FASTQ R1_L002 unaligned CPTAC3 42619f5f-391a-4775-a515-1b5714a90f1b 42e685f48158091e501cd860d394ce0b { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-05914.RNA-Seq.R1_L005.A C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTGCTTCC-GATAGATC_S19_L005_R1_001.fastq.gz 3400862397 FASTQ R1_L005 unaligned CPTAC3 58847338-77fa-4225-ae9a-d7cabe9abcc3 cd894b5a439454dc9fe082165420865d { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-05914.RNA-Seq.R2_L002.T C3N-05914 LSCC RNA-Seq tumor CPT0322010009 200428_UNC31-K00269_0276_BHH5TMBBXY_GCAGAATT-ACCGGCCA_S7_L002_R2_001.fastq.gz 5750197657 FASTQ R2_L002 unaligned CPTAC3 3931c065-87df-472d-9583-a9be46390ee2 9d1cb10fc438db736a910c8425929c5f { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-05914.RNA-Seq.R2_L005.A C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 200428_UNC31-K00269_0275_AHGCJVBBXY_CTGCTTCC-GATAGATC_S19_L005_R2_001.fastq.gz 3556116993 FASTQ R2_L005 unaligned CPTAC3 a2209efe-30e2-43b0-88d0-736412de5aaa a1133fdf11e9e86422bd6148babb595c { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-05914.RNA-Seq.transcriptome.A.hg38 C3N-05914 LSCC RNA-Seq tissue_normal CPT0322020009 e07f663b-dab8-49c1-b52e-383bfa7228ad.rna_seq.transcriptome.gdc_realn.bam 10082282876 BAM transcriptome harmonized CPTAC3 dac5a4b7-675e-40bc-a97c-9e8d99c680e3 9329e961518a9e5398fa394531d72bf4 { 'aliquot_tag': 'ALQ_f7ec9e98', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05914.RNA-Seq.transcriptome.T.hg38 C3N-05914 LSCC RNA-Seq tumor CPT0322010009 e7126500-83b9-43f5-91ed-8f714c16f6ab.rna_seq.transcriptome.gdc_realn.bam 13983768268 BAM transcriptome harmonized CPTAC3 8aedb480-0860-4300-a50f-155b72675a8a b082aab384c8c6b0586d9dc4ddd367b3 { 'aliquot_tag': 'ALQ_b04ce448', 'gdc_sample_type': 'Primary Tumor' } C3N-05914.WGS.N C3N-05914 LSCC WGS blood_normal CPT0322050002 CPT0322050002.WholeGenome.RP-2158.bam 23229715209 BAM aligned CPTAC3 ed727cd1-4f92-4f4a-8de5-b393ef901fa5 c34e9e068a7f6d8675285ee98ea1ae61 { 'aliquot_tag': 'ALQ_d21e9b00', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05914.WGS.N.hg38 C3N-05914 LSCC WGS blood_normal CPT0322050002 8f68f68a-13a5-4085-a115-17a6701ab6fd_wgs_gdc_realn.bam 67977021003 BAM harmonized CPTAC3 a5b9dad9-61b5-4b00-b76e-d1964d9932bb a842e826b2363e2677297c5c90a14f69 { 'aliquot_tag': 'ALQ_d21e9b00', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05914.WGS.T C3N-05914 LSCC WGS tumor CPT0322010006 CPT0322010006.WholeGenome.RP-2158.bam 22813058414 BAM aligned CPTAC3 43e756e2-8ea2-4a9e-ba9b-81afc437782d 21a6f1c0b18a3ffb0180b59c02663bf6 { 'aliquot_tag': 'ALQ_20f3f9d9', 'gdc_sample_type': 'Primary Tumor' } @@ -38508,16 +40942,16 @@ C3N-05915.miRNA-Seq.A C3N-05915 LSCC miRNA-Seq tissue_normal CPT0322070009 20032 C3N-05915.miRNA-Seq.A.hg38 C3N-05915 LSCC miRNA-Seq tissue_normal CPT0322070009 85f8793d-2436-44cc-a6be-cb2f443896b8_mirnaseq_gdc_realn.bam 257121883 BAM harmonized CPTAC3 b61bdd84-a1f5-44b4-b65f-772becd8b2ae 017bc6503f9670661277fe34471c20f7 { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-05915.miRNA-Seq.T C3N-05915 LSCC miRNA-Seq tumor CPT0322060009 200224_UNC31-K00269_0267_AHC722BBXY_GGTAGC_S24_L008_R1_001.unaln.bam 179125540 BAM unaligned CPTAC3 b2f36d14-f9c2-4410-b7d6-15ea391ba8e1 f05f4845dfa1d6c005534ce9a515007a { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor' } C3N-05915.miRNA-Seq.T.hg38 C3N-05915 LSCC miRNA-Seq tumor CPT0322060009 9e4e0903-c9f8-4cde-af37-8db1b1be8582_mirnaseq_gdc_realn.bam 197900557 BAM harmonized CPTAC3 c64ae0a9-1bc5-4048-9947-81f73debe2bf 801ff1439af5f64bcc3bb818867f78db { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor' } -C3N-05915.RNA-Seq.chimeric.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 3786ba34-23f0-44fb-8383-c413802fff2f.rna_seq.chimeric.gdc_realn.bam 119547661 BAM chimeric harmonized CPTAC3 499c6c38-b814-488c-be25-e046e28282fe e8089f61fed8e6051a61e5f61dbe29d4 { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05915.RNA-Seq.chimeric.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 25402f97-a2cf-4658-a561-f505fb043e76.rna_seq.chimeric.gdc_realn.bam 34723116 BAM chimeric harmonized CPTAC3 f06e5673-cddd-41f8-8527-cfd180739f47 77c09333b53b028c2dcc12861079bbc3 { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor' } -C3N-05915.RNA-Seq.genomic.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 3786ba34-23f0-44fb-8383-c413802fff2f.rna_seq.genomic.gdc_realn.bam 9197044791 BAM genomic harmonized CPTAC3 0e35106a-d8f9-4df2-a2b5-248b021a33a9 5b2d4a6e803903816affa24778c357ee { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05915.RNA-Seq.genomic.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 25402f97-a2cf-4658-a561-f505fb043e76.rna_seq.genomic.gdc_realn.bam 7905599156 BAM genomic harmonized CPTAC3 475005c1-09f5-4750-a626-2745af2c0b51 7dbdd28ad8341be193493098a95cf223 { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor' } -C3N-05915.RNA-Seq.R1_L002.T C3N-05915 LSCC RNA-Seq tumor CPT0322060009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGAGGCC-GTTAATTG_S8_L002_R1_001.fastq.gz 3825956607 FASTQ R1_L002 unaligned CPTAC3 75bdae0c-f147-4087-8fed-495747727c5a be9b707db66e2c34acd26a0b94f61c27 { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor' } -C3N-05915.RNA-Seq.R1_L005.A C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCATCCTT-AGCGAGCT_S20_L005_R1_001.fastq.gz 4785620358 FASTQ R1_L005 unaligned CPTAC3 2eb48e82-c9fb-49f0-8b86-8bfc59f07970 7b2906ab1ffb41a17fce3448c8bb540e { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05915.RNA-Seq.R2_L002.T C3N-05915 LSCC RNA-Seq tumor CPT0322060009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGAGGCC-GTTAATTG_S8_L002_R2_001.fastq.gz 4176622628 FASTQ R2_L002 unaligned CPTAC3 2275b000-ab63-41d0-9239-28c5b2296c46 36d5d92c9beef9dbba0720a2cef36cdf { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor' } -C3N-05915.RNA-Seq.R2_L005.A C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCATCCTT-AGCGAGCT_S20_L005_R2_001.fastq.gz 4970327192 FASTQ R2_L005 unaligned CPTAC3 feb2ffa1-b685-4ffb-a7b7-871bc446a2bb 5cb9adee585c1e71c515c4aa62765d9f { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05915.RNA-Seq.transcriptome.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 3786ba34-23f0-44fb-8383-c413802fff2f.rna_seq.transcriptome.gdc_realn.bam 10981670621 BAM transcriptome harmonized CPTAC3 e2434742-0c1f-40e0-b03c-12d1e70f0f24 de880f65058e8cb2024579244da7c22c { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05915.RNA-Seq.transcriptome.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 25402f97-a2cf-4658-a561-f505fb043e76.rna_seq.transcriptome.gdc_realn.bam 9597943597 BAM transcriptome harmonized CPTAC3 713ee633-bc1d-484e-a58c-57dfbafc8cf2 05b0a8ba24cbb882063f666638c207bc { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor' } +C3N-05915.RNA-Seq.chimeric.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 01c83dc1-cbb7-45c5-b023-f69b77ca7b5e.rna_seq.chimeric.gdc_realn.bam 119521512 BAM chimeric harmonized CPTAC3 fd2758d9-6dc6-4f9e-b7cb-066b6dcfde70 3ffa0c503e575f6f8a54c9e15225570f { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05915.RNA-Seq.chimeric.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 94cc9462-a7b3-4f1b-a47f-12c102d396fa.rna_seq.chimeric.gdc_realn.bam 34731555 BAM chimeric harmonized CPTAC3 e4e5e752-c1e0-4bbf-8abb-9a35ce6db365 ac1570509c143945a55ab00c63cf6f0b { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor' } +C3N-05915.RNA-Seq.genomic.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 01c83dc1-cbb7-45c5-b023-f69b77ca7b5e.rna_seq.genomic.gdc_realn.bam 9198530696 BAM genomic harmonized CPTAC3 fc8b791b-d63a-47bf-987c-98c45971f926 573a187742a71aa248b55059335935af { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05915.RNA-Seq.genomic.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 94cc9462-a7b3-4f1b-a47f-12c102d396fa.rna_seq.genomic.gdc_realn.bam 7907000354 BAM genomic harmonized CPTAC3 93c0703c-7486-47d4-8668-fa1df6319baf 2f8e8125f77771c4818b009841f8f7d3 { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor' } +C3N-05915.RNA-Seq.R1_L002.T C3N-05915 LSCC RNA-Seq tumor CPT0322060009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGAGGCC-GTTAATTG_S8_L002_R1_001.fastq.gz 3825956607 FASTQ R1_L002 unaligned CPTAC3 75bdae0c-f147-4087-8fed-495747727c5a be9b707db66e2c34acd26a0b94f61c27 { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C3N-05915.RNA-Seq.R1_L005.A C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCATCCTT-AGCGAGCT_S20_L005_R1_001.fastq.gz 4785620358 FASTQ R1_L005 unaligned CPTAC3 2eb48e82-c9fb-49f0-8b86-8bfc59f07970 7b2906ab1ffb41a17fce3448c8bb540e { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +C3N-05915.RNA-Seq.R2_L002.T C3N-05915 LSCC RNA-Seq tumor CPT0322060009 200428_UNC31-K00269_0276_BHH5TMBBXY_ATGAGGCC-GTTAATTG_S8_L002_R2_001.fastq.gz 4176622628 FASTQ R2_L002 unaligned CPTAC3 2275b000-ab63-41d0-9239-28c5b2296c46 36d5d92c9beef9dbba0720a2cef36cdf { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C3N-05915.RNA-Seq.R2_L005.A C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 200428_UNC31-K00269_0275_AHGCJVBBXY_TCATCCTT-AGCGAGCT_S20_L005_R2_001.fastq.gz 4970327192 FASTQ R2_L005 unaligned CPTAC3 feb2ffa1-b685-4ffb-a7b7-871bc446a2bb 5cb9adee585c1e71c515c4aa62765d9f { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } +C3N-05915.RNA-Seq.transcriptome.A.hg38 C3N-05915 LSCC RNA-Seq tissue_normal CPT0322070009 01c83dc1-cbb7-45c5-b023-f69b77ca7b5e.rna_seq.transcriptome.gdc_realn.bam 12490361166 BAM transcriptome harmonized CPTAC3 cf7a4cbd-210f-4112-adae-9970e06c60ae 876d35e2df9a6b1ec40312d281aaafeb { 'aliquot_tag': 'ALQ_3f0c11e8', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05915.RNA-Seq.transcriptome.T.hg38 C3N-05915 LSCC RNA-Seq tumor CPT0322060009 94cc9462-a7b3-4f1b-a47f-12c102d396fa.rna_seq.transcriptome.gdc_realn.bam 10760464255 BAM transcriptome harmonized CPTAC3 65be7d6c-868b-4523-b3b2-dcf2dbf9c671 c366b4759dc48cf3f4961b9ad1f5dc87 { 'aliquot_tag': 'ALQ_26c3858', 'gdc_sample_type': 'Primary Tumor' } C3N-05915.WGS.N C3N-05915 LSCC WGS blood_normal CPT0322100002 CPT0322100002.WholeGenome.RP-2158.bam 24168918360 BAM aligned CPTAC3 4d992dd8-4561-44c4-9c73-502480f9ddd4 8d11c040902754b63c412a5d2bfb646f { 'aliquot_tag': 'ALQ_d1a2c7d5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05915.WGS.N.hg38 C3N-05915 LSCC WGS blood_normal CPT0322100002 559686d4-6154-46cb-9117-0f8891718a04_wgs_gdc_realn.bam 70275815907 BAM harmonized CPTAC3 e12e825f-4ce5-4a46-8f95-1c68bc93eb39 10f36d55587937a2d9c1bf4f0f9903db { 'aliquot_tag': 'ALQ_d1a2c7d5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05915.WGS.T C3N-05915 LSCC WGS tumor CPT0322060006 CPT0322060006.WholeGenome.RP-2158.bam 25921492516 BAM aligned CPTAC3 31afeab1-a2f4-461a-9540-a0158665c47d 5d3fa4285d4b39b4b7929281d7a0290e { 'aliquot_tag': 'ALQ_92d325c9', 'gdc_sample_type': 'Primary Tumor' } @@ -38528,8 +40962,11 @@ C3N-05915.WXS.N C3N-05915 LSCC WXS blood_normal CPT0322100002 CPT0322100002.Whol C3N-05915.WXS.N.hg38 C3N-05915 LSCC WXS blood_normal CPT0322100002 559686d4-6154-46cb-9117-0f8891718a04_wxs_gdc_realn.bam 31382017809 BAM harmonized CPTAC3 6a2f9466-fbdb-46f9-b42b-4df45a6af31f 5bb9548ddc4dfbb5bee4c9a2b0d5cd6e { 'aliquot_tag': 'ALQ_d1a2c7d5', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05915.WXS.T C3N-05915 LSCC WXS tumor CPT0322060006 CPT0322060006.WholeExome.RP-1303.bam 40773877575 BAM aligned CPTAC3 6efec94b-63d6-41f1-b6ed-227d61a4847e 801de8a7014d3dc15f0385e10f168d84 { 'aliquot_tag': 'ALQ_92d325c9', 'gdc_sample_type': 'Primary Tumor' } C3N-05915.WXS.T.hg38 C3N-05915 LSCC WXS tumor CPT0322060006 3c742abb-e129-49e8-92cf-6af9ce1804eb_wxs_gdc_realn.bam 56671609756 BAM harmonized CPTAC3 ab428707-e067-4fd9-9212-ba45fb831ea0 db7b4a1d130e7053b6bd31586b226418 { 'aliquot_tag': 'ALQ_92d325c9', 'gdc_sample_type': 'Primary Tumor' } -C3N-05919.RNA-Seq.R1_.T C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 20210714_P1_C1_WB7988_plate1_S25_R1_001.fastq.gz 4290202054 FASTQ R1_ unaligned CPTAC3 4b77fd39-4481-4d90-9eb3-bfa97b3b8c8c 4ee1759a952c3f5877c46416aa0b1c1a { 'aliquot_tag': 'ALQ_3655213d', 'gdc_sample_type': 'Primary Tumor' } -C3N-05919.RNA-Seq.R2_.T C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 20210714_P1_C1_WB7988_plate1_S25_R2_001.fastq.gz 4440463017 FASTQ R2_ unaligned CPTAC3 c6435c1d-d80e-45c6-aeac-0b56a4cbd776 ae102947aeca231522eb29252b19fcc4 { 'aliquot_tag': 'ALQ_3655213d', 'gdc_sample_type': 'Primary Tumor' } +C3N-05919.RNA-Seq.chimeric.T.hg38 C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 ec3faf84-21b2-4362-95d3-c7c1dcdc40f3.rna_seq.chimeric.gdc_realn.bam 86175370 BAM chimeric harmonized CPTAC3 b4de08d8-514f-40fd-9f79-0f8930bca1ea 093b1ad4fc6c4500e351c1557bd06105 { 'aliquot_tag': 'ALQ_3655213d', 'gdc_sample_type': 'Primary Tumor' } +C3N-05919.RNA-Seq.genomic.T.hg38 C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 ec3faf84-21b2-4362-95d3-c7c1dcdc40f3.rna_seq.genomic.gdc_realn.bam 6556954948 BAM genomic harmonized CPTAC3 d41715a4-7109-4d1a-99f6-896fa4f180a7 f706bbe8edf201c88357d375208855cf { 'aliquot_tag': 'ALQ_3655213d', 'gdc_sample_type': 'Primary Tumor' } +C3N-05919.RNA-Seq.T C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 20210714_P1_C1_WB7988_plate1_S25_R1_001.fastq.gz 4290202054 FASTQ unaligned CPTAC3 4b77fd39-4481-4d90-9eb3-bfa97b3b8c8c 4ee1759a952c3f5877c46416aa0b1c1a +C3N-05919.RNA-Seq.T C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 20210714_P1_C1_WB7988_plate1_S25_R2_001.fastq.gz 4440463017 FASTQ unaligned CPTAC3 c6435c1d-d80e-45c6-aeac-0b56a4cbd776 ae102947aeca231522eb29252b19fcc4 +C3N-05919.RNA-Seq.transcriptome.T.hg38 C3N-05919 HNSCC RNA-Seq tumor CPT0355020001 ec3faf84-21b2-4362-95d3-c7c1dcdc40f3.rna_seq.transcriptome.gdc_realn.bam 5951335402 BAM transcriptome harmonized CPTAC3 cf2e2a5e-330f-45fc-85d0-f8671a96afaf 09623ee186dffb5a3d1d62abbbfe8caa { 'aliquot_tag': 'ALQ_3655213d', 'gdc_sample_type': 'Primary Tumor' } C3N-05923.MethArray.Green.A C3N-05923 LSCC Methylation Array tissue_normal CPT0322390006 204367490084_R07C01_Grn.idat 13677890 IDAT Green NA CPTAC3 956ee02e-a209-466f-b9dc-fba625fd1e5f 483fc33fc8ae0908c19b35f3ab72d006 { 'aliquot_tag': 'ALQ_9617c0b6', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-05923.MethArray.Green.T C3N-05923 LSCC Methylation Array tumor CPT0322380006 204367400148_R01C01_Grn.idat 13677880 IDAT Green NA CPTAC3 de90dddf-3cec-4c35-a334-4fc28caba173 3d0d263cbd0abbd6fa80401085e7dc59 { 'aliquot_tag': 'ALQ_ab77e906', 'gdc_sample_type': 'Primary Tumor' } C3N-05923.MethArray.Red.A C3N-05923 LSCC Methylation Array tissue_normal CPT0322390006 204367490084_R07C01_Red.idat 13677890 IDAT Red NA CPTAC3 c31849cd-29c0-4ff0-85fb-e351e35ef81e 151c751b0332006d6e1519482da577fa { 'aliquot_tag': 'ALQ_9617c0b6', 'gdc_sample_type': 'Solid Tissue Normal' } @@ -38538,16 +40975,16 @@ C3N-05923.miRNA-Seq.A C3N-05923 LSCC miRNA-Seq tissue_normal CPT0322390009 20032 C3N-05923.miRNA-Seq.A.hg38 C3N-05923 LSCC miRNA-Seq tissue_normal CPT0322390009 a9fbb10b-f3c0-4b09-a69f-b0d801a91b67_mirnaseq_gdc_realn.bam 347724053 BAM harmonized CPTAC3 bf3183e3-2933-4d85-a6dd-220e06371af4 02a3a6695886e0087e7b4c913e2cf787 { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-05923.miRNA-Seq.T C3N-05923 LSCC miRNA-Seq tumor CPT0322380009 200224_UNC31-K00269_0267_AHC722BBXY_ACTGAT_S25_L007_R1_001.unaln.bam 224888474 BAM unaligned CPTAC3 e17c359f-1ae2-4368-af53-bda0db877ae1 4e74529e85d26ea997bcbbe640a4fa04 { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor' } C3N-05923.miRNA-Seq.T.hg38 C3N-05923 LSCC miRNA-Seq tumor CPT0322380009 dcb10878-d254-428e-8de9-ad94d6729a25_mirnaseq_gdc_realn.bam 246121106 BAM harmonized CPTAC3 ba455b79-338d-4da7-944d-81f1f6482a9e c43594c34e5780d2915e010f42d4117c { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor' } -C3N-05923.RNA-Seq.chimeric.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 2e24bdd3-7508-46ea-9663-9de3eb469812.rna_seq.chimeric.gdc_realn.bam 56479237 BAM chimeric harmonized CPTAC3 35f4313e-6d5f-49bd-b462-e1848b975d39 323f71a7e221cac83551cbb00ef9690d { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05923.RNA-Seq.chimeric.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 7f3fba2e-3b20-47c9-a9a3-70afa9f41b98.rna_seq.chimeric.gdc_realn.bam 43177534 BAM chimeric harmonized CPTAC3 e1adc5e0-0ff2-40f9-b9a6-4df4d4353092 a7160a15158ddb49c817ad2267af6e0f { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor' } -C3N-05923.RNA-Seq.genomic.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 2e24bdd3-7508-46ea-9663-9de3eb469812.rna_seq.genomic.gdc_realn.bam 6631044262 BAM genomic harmonized CPTAC3 6bc11343-30b1-4faf-bfb1-7ed6ebd85404 556a65057ce5789f310e970a2b587b87 { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05923.RNA-Seq.genomic.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 7f3fba2e-3b20-47c9-a9a3-70afa9f41b98.rna_seq.genomic.gdc_realn.bam 9022099680 BAM genomic harmonized CPTAC3 d6f3aaff-a7dd-44ad-b0f4-e5376b4ac0a6 341b72e96582caf49e320f0ee6829488 { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor' } -C3N-05923.RNA-Seq.R1_L003.T C3N-05923 LSCC RNA-Seq tumor CPT0322380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 4494548642 FASTQ R1_L003 unaligned CPTAC3 90004f61-49e4-496c-9a0b-f1bdf504c25f 30629344159280d005291b178b60764a { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor' } -C3N-05923.RNA-Seq.R1_L006.A C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGGTTATA-CAGTTCCG_S21_L006_R1_001.fastq.gz 3354127044 FASTQ R1_L006 unaligned CPTAC3 ee71d79c-d2b9-465c-9991-f983ec6ddb35 356bf90bcb8667fc649d6e3ca034623e { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05923.RNA-Seq.R2_L003.T C3N-05923 LSCC RNA-Seq tumor CPT0322380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 4862205138 FASTQ R2_L003 unaligned CPTAC3 8ba0686a-4c85-4ffa-a7dc-113295780a61 67289665fe5f4553f0bc84e774d93b1d { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor' } -C3N-05923.RNA-Seq.R2_L006.A C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGGTTATA-CAGTTCCG_S21_L006_R2_001.fastq.gz 3498431789 FASTQ R2_L006 unaligned CPTAC3 cce57f46-dee9-4d01-a95b-c25c7a52247c 2cb1a56bf88b16e827b08035d3cbe35a { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05923.RNA-Seq.transcriptome.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 2e24bdd3-7508-46ea-9663-9de3eb469812.rna_seq.transcriptome.gdc_realn.bam 8142597752 BAM transcriptome harmonized CPTAC3 20693025-15a7-4ba1-b7d9-b171815825eb f1bcdb1777362e9902f6f621dc33f2c5 { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05923.RNA-Seq.transcriptome.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 7f3fba2e-3b20-47c9-a9a3-70afa9f41b98.rna_seq.transcriptome.gdc_realn.bam 11205959681 BAM transcriptome harmonized CPTAC3 c5f0ca60-17b8-4aba-8b91-012b77a036c5 be84f2730d233b8d4574bb96eb29cc33 { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor' } +C3N-05923.RNA-Seq.chimeric.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 68b92dd9-ac9f-4b31-ae39-cd4837107e4a.rna_seq.chimeric.gdc_realn.bam 56468768 BAM chimeric harmonized CPTAC3 86958c49-4aca-47e1-83d8-5b5a00237a92 8a3e221097655ac0463ecf41468e6559 { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05923.RNA-Seq.chimeric.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 529fcf8c-e99b-4ff7-b5d9-8842cd6259b7.rna_seq.chimeric.gdc_realn.bam 43187938 BAM chimeric harmonized CPTAC3 0cdcf0a8-b207-4f72-b78e-dc99e41ea2bf e595d40ab1a7ae5d9af239efad1582f5 { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor' } +C3N-05923.RNA-Seq.genomic.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 68b92dd9-ac9f-4b31-ae39-cd4837107e4a.rna_seq.genomic.gdc_realn.bam 6632162384 BAM genomic harmonized CPTAC3 4530b0b4-e78e-4613-acf2-26303aee1ada 7809bf0553a145b36b27f17dc6654319 { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05923.RNA-Seq.genomic.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 529fcf8c-e99b-4ff7-b5d9-8842cd6259b7.rna_seq.genomic.gdc_realn.bam 9024575022 BAM genomic harmonized CPTAC3 debafeb8-d9bb-4c8a-879e-05b58cf14f2c ecd7298540bbd90871083e80ba24e496 { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor' } +C3N-05923.RNA-Seq.R1_L003.T C3N-05923 LSCC RNA-Seq tumor CPT0322380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ACTAAGAT-AACCGCGG_S9_L003_R1_001.fastq.gz 4494548642 FASTQ R1_L003 unaligned CPTAC3 90004f61-49e4-496c-9a0b-f1bdf504c25f 30629344159280d005291b178b60764a { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-05923.RNA-Seq.R1_L006.A C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGGTTATA-CAGTTCCG_S21_L006_R1_001.fastq.gz 3354127044 FASTQ R1_L006 unaligned CPTAC3 ee71d79c-d2b9-465c-9991-f983ec6ddb35 356bf90bcb8667fc649d6e3ca034623e { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-05923.RNA-Seq.R2_L003.T C3N-05923 LSCC RNA-Seq tumor CPT0322380009 200428_UNC31-K00269_0276_BHH5TMBBXY_ACTAAGAT-AACCGCGG_S9_L003_R2_001.fastq.gz 4862205138 FASTQ R2_L003 unaligned CPTAC3 8ba0686a-4c85-4ffa-a7dc-113295780a61 67289665fe5f4553f0bc84e774d93b1d { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-05923.RNA-Seq.R2_L006.A C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 200428_UNC31-K00269_0275_AHGCJVBBXY_AGGTTATA-CAGTTCCG_S21_L006_R2_001.fastq.gz 3498431789 FASTQ R2_L006 unaligned CPTAC3 cce57f46-dee9-4d01-a95b-c25c7a52247c 2cb1a56bf88b16e827b08035d3cbe35a { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-05923.RNA-Seq.transcriptome.A.hg38 C3N-05923 LSCC RNA-Seq tissue_normal CPT0322390009 68b92dd9-ac9f-4b31-ae39-cd4837107e4a.rna_seq.transcriptome.gdc_realn.bam 9256406149 BAM transcriptome harmonized CPTAC3 7d7a9877-39e3-462e-abcd-35e208a51fca 54b0776505b3abcd7eab207a77bc6cd0 { 'aliquot_tag': 'ALQ_6a8dd27', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05923.RNA-Seq.transcriptome.T.hg38 C3N-05923 LSCC RNA-Seq tumor CPT0322380009 529fcf8c-e99b-4ff7-b5d9-8842cd6259b7.rna_seq.transcriptome.gdc_realn.bam 12663647383 BAM transcriptome harmonized CPTAC3 893ea809-8f61-4c7e-a1d9-94138f614d22 a7668273d8797db8ac2108cef18cd32b { 'aliquot_tag': 'ALQ_3bc8f497', 'gdc_sample_type': 'Primary Tumor' } C3N-05923.WGS.N C3N-05923 LSCC WGS blood_normal CPT0322420002 CPT0322420002.WholeGenome.RP-2158.bam 22247182076 BAM aligned CPTAC3 7db87f17-02a0-420f-8c8e-f850d21b4ab2 8f67aad530decb3015ae9daef4626791 { 'aliquot_tag': 'ALQ_fbaf0506', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05923.WGS.N C3N-05923 LSCC WGS blood_normal CPT0322420002 CPT0322420002.WholeGenome.RP-2158.bam 22277769516 BAM aligned CPTAC3 892869e2-683c-4db0-aec6-f1a626258b3b 597f1ae298e61d6135c7735f990a1d54 { 'aliquot_tag': 'ALQ_fbaf0506', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05923.WGS.N.hg38 C3N-05923 LSCC WGS blood_normal CPT0322420002 e7d93998-6d00-4922-885b-9cbf6087243a_wgs_gdc_realn.bam 66415570499 BAM harmonized CPTAC3 97e58f07-e0c8-401b-8cc0-ca458145607e 63e724ca8dda564470aec53949c1c7ce { 'aliquot_tag': 'ALQ_fbaf0506', 'gdc_sample_type': 'Blood Derived Normal' } @@ -38568,16 +41005,16 @@ C3N-05929.miRNA-Seq.A C3N-05929 LSCC miRNA-Seq tissue_normal CPT0322540009 20032 C3N-05929.miRNA-Seq.A.hg38 C3N-05929 LSCC miRNA-Seq tissue_normal CPT0322540009 0cc8fee9-3beb-49c3-bc66-9a1684575608_mirnaseq_gdc_realn.bam 280114513 BAM harmonized CPTAC3 863c69ce-0329-4b1b-92a3-cd5980b4a794 0f6fb699100c3608b9f196ae4bb3fc90 { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal' } C3N-05929.miRNA-Seq.T C3N-05929 LSCC miRNA-Seq tumor CPT0322530009 200224_UNC31-K00269_0267_AHC722BBXY_ATGAGC_S26_L007_R1_001.unaln.bam 193939181 BAM unaligned CPTAC3 a54ddf21-1e74-46d0-b623-0442f8a0ec8e c26f3fdb12b7bf7cdb00e22f555290b9 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor' } C3N-05929.miRNA-Seq.T.hg38 C3N-05929 LSCC miRNA-Seq tumor CPT0322530009 4670cbb0-ebc9-4f28-a779-68fdb88be0b8_mirnaseq_gdc_realn.bam 218315510 BAM harmonized CPTAC3 c86d52ea-94a8-41b1-96a0-54edd2804dc7 6a005a756dcf208c5b583103449a91d3 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor' } -C3N-05929.RNA-Seq.chimeric.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 73827402-e9ab-4121-b21f-70a834fec44b.rna_seq.chimeric.gdc_realn.bam 72855652 BAM chimeric harmonized CPTAC3 f0058e40-b756-47c7-aa93-35d8577740e0 424abf36e8c5ad08a5a94d9806051170 { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05929.RNA-Seq.chimeric.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 330729e0-f535-4141-8522-d57d8769a221.rna_seq.chimeric.gdc_realn.bam 34479734 BAM chimeric harmonized CPTAC3 273da93b-cfd7-48cf-adea-7a18009fee1e d3c88a69072109e888d98ae8ac05a509 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor' } -C3N-05929.RNA-Seq.genomic.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 73827402-e9ab-4121-b21f-70a834fec44b.rna_seq.genomic.gdc_realn.bam 9309479409 BAM genomic harmonized CPTAC3 bc11fa1e-b9ad-438c-95ca-22bfb990fb4b b5513f7eeac723c732d49f0bce61213e { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05929.RNA-Seq.genomic.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 330729e0-f535-4141-8522-d57d8769a221.rna_seq.genomic.gdc_realn.bam 7275422480 BAM genomic harmonized CPTAC3 e83ad4a0-ed84-4430-be4c-aab894f5f437 855407af73e12bc631085f4859c3b9e6 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor' } -C3N-05929.RNA-Seq.R1_L003.T C3N-05929 LSCC RNA-Seq tumor CPT0322530009 200428_UNC31-K00269_0276_BHH5TMBBXY_GTCGGAGC-GGTTATAA_S10_L003_R1_001.fastq.gz 3571465475 FASTQ R1_L003 unaligned CPTAC3 d22afb8c-5cf5-4e98-b58b-39798d2cbae3 11d4edad3bcee1bd7b2361240a66b8c9 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor' } -C3N-05929.RNA-Seq.R1_L006.A C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 200428_UNC31-K00269_0275_AHGCJVBBXY_GAACCGCG-TGACCTTA_S22_L006_R1_001.fastq.gz 4806108331 FASTQ R1_L006 unaligned CPTAC3 9cbe6635-995a-411f-883c-d8bcfaed58d2 6cca2a8f4caebb22319876f09fa0bd44 { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05929.RNA-Seq.R2_L003.T C3N-05929 LSCC RNA-Seq tumor CPT0322530009 200428_UNC31-K00269_0276_BHH5TMBBXY_GTCGGAGC-GGTTATAA_S10_L003_R2_001.fastq.gz 3893882529 FASTQ R2_L003 unaligned CPTAC3 200ade6e-45a6-4b14-b570-23c1adc6d051 68ad2bb5603cbbb5a26f3ede5a45cbd1 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor' } -C3N-05929.RNA-Seq.R2_L006.A C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 200428_UNC31-K00269_0275_AHGCJVBBXY_GAACCGCG-TGACCTTA_S22_L006_R2_001.fastq.gz 5032367135 FASTQ R2_L006 unaligned CPTAC3 374007a8-1849-4b79-be60-5bd503d26be3 5faeb707c72344111832a35e080aa426 { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05929.RNA-Seq.transcriptome.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 73827402-e9ab-4121-b21f-70a834fec44b.rna_seq.transcriptome.gdc_realn.bam 11938000420 BAM transcriptome harmonized CPTAC3 4e8e96b2-7d2a-4815-90fd-e5feb9c0a87c 15dc6271f70c748fd90a906b1c8ba56f { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal' } -C3N-05929.RNA-Seq.transcriptome.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 330729e0-f535-4141-8522-d57d8769a221.rna_seq.transcriptome.gdc_realn.bam 8389357861 BAM transcriptome harmonized CPTAC3 77f3942f-ae23-4439-a3ba-fa3d65456193 9e1a236eb5fbb38ae411a853bb7ebbd4 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor' } +C3N-05929.RNA-Seq.chimeric.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 05879e55-d8c9-472a-a67c-434c552e7f62.rna_seq.chimeric.gdc_realn.bam 72864518 BAM chimeric harmonized CPTAC3 5ad43e57-dff4-4223-bb03-23a8250e8fbf c98343d5f977bb1de9411ea75fd2bfde { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05929.RNA-Seq.chimeric.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 78b733a6-69d9-4f7b-b487-e8b1b4d6fd4d.rna_seq.chimeric.gdc_realn.bam 34475110 BAM chimeric harmonized CPTAC3 3768fa94-17c2-4bdd-b1b9-8ca818aa313d be662e0dc4143572b5c914bf15475189 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor' } +C3N-05929.RNA-Seq.genomic.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 05879e55-d8c9-472a-a67c-434c552e7f62.rna_seq.genomic.gdc_realn.bam 9311387050 BAM genomic harmonized CPTAC3 7e659049-b57c-4afa-b2b0-5f4824bd2231 57b82b3e4ca32d8f7c13c16e2b6a2575 { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05929.RNA-Seq.genomic.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 78b733a6-69d9-4f7b-b487-e8b1b4d6fd4d.rna_seq.genomic.gdc_realn.bam 7277075094 BAM genomic harmonized CPTAC3 937cf40f-56e0-424f-a413-05258a0623d4 aa7b2720dfd5db75bf77d653cea5a2f8 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor' } +C3N-05929.RNA-Seq.R1_L003.T C3N-05929 LSCC RNA-Seq tumor CPT0322530009 200428_UNC31-K00269_0276_BHH5TMBBXY_GTCGGAGC-GGTTATAA_S10_L003_R1_001.fastq.gz 3571465475 FASTQ R1_L003 unaligned CPTAC3 d22afb8c-5cf5-4e98-b58b-39798d2cbae3 11d4edad3bcee1bd7b2361240a66b8c9 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L003' } +C3N-05929.RNA-Seq.R1_L006.A C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 200428_UNC31-K00269_0275_AHGCJVBBXY_GAACCGCG-TGACCTTA_S22_L006_R1_001.fastq.gz 4806108331 FASTQ R1_L006 unaligned CPTAC3 9cbe6635-995a-411f-883c-d8bcfaed58d2 6cca2a8f4caebb22319876f09fa0bd44 { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +C3N-05929.RNA-Seq.R2_L003.T C3N-05929 LSCC RNA-Seq tumor CPT0322530009 200428_UNC31-K00269_0276_BHH5TMBBXY_GTCGGAGC-GGTTATAA_S10_L003_R2_001.fastq.gz 3893882529 FASTQ R2_L003 unaligned CPTAC3 200ade6e-45a6-4b14-b570-23c1adc6d051 68ad2bb5603cbbb5a26f3ede5a45cbd1 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L003' } +C3N-05929.RNA-Seq.R2_L006.A C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 200428_UNC31-K00269_0275_AHGCJVBBXY_GAACCGCG-TGACCTTA_S22_L006_R2_001.fastq.gz 5032367135 FASTQ R2_L006 unaligned CPTAC3 374007a8-1849-4b79-be60-5bd503d26be3 5faeb707c72344111832a35e080aa426 { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } +C3N-05929.RNA-Seq.transcriptome.A.hg38 C3N-05929 LSCC RNA-Seq tissue_normal CPT0322540009 05879e55-d8c9-472a-a67c-434c552e7f62.rna_seq.transcriptome.gdc_realn.bam 13515620244 BAM transcriptome harmonized CPTAC3 26bc131a-3f56-4978-959a-9bd5a93d149b ad19a8e8612c723673d5e640c2093721 { 'aliquot_tag': 'ALQ_2861fa8b', 'gdc_sample_type': 'Solid Tissue Normal' } +C3N-05929.RNA-Seq.transcriptome.T.hg38 C3N-05929 LSCC RNA-Seq tumor CPT0322530009 78b733a6-69d9-4f7b-b487-e8b1b4d6fd4d.rna_seq.transcriptome.gdc_realn.bam 9463435440 BAM transcriptome harmonized CPTAC3 a7038143-8667-466f-a668-ecec7c56fa26 4bcfe09462f5ca8020dd6bdf8131d003 { 'aliquot_tag': 'ALQ_9a41269b', 'gdc_sample_type': 'Primary Tumor' } C3N-05929.WGS.N C3N-05929 LSCC WGS blood_normal CPT0322570002 CPT0322570002.WholeGenome.RP-2158.bam 22255632877 BAM aligned CPTAC3 4541b197-1013-4503-8f42-4a85fb176f20 e780fde0db80098dd0d8793ee4b8262b { 'aliquot_tag': 'ALQ_f81359d3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05929.WGS.N C3N-05929 LSCC WGS blood_normal CPT0322570002 CPT0322570002.WholeGenome.RP-2158.bam 22283419425 BAM aligned CPTAC3 2c32ce90-3d11-4bce-9c54-6fee6f91d558 a8c1f85a57740a9d92bc8daaf40bf598 { 'aliquot_tag': 'ALQ_f81359d3', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05929.WGS.N.hg38 C3N-05929 LSCC WGS blood_normal CPT0322570002 e3bf416b-3d08-4d1b-bec4-808e55c7788c_wgs_gdc_realn.bam 67323248287 BAM harmonized CPTAC3 823dda5b-ff15-4a66-b28b-de0632850623 89a756316e1456f058be89545b988157 { 'aliquot_tag': 'ALQ_f81359d3', 'gdc_sample_type': 'Blood Derived Normal' } @@ -38594,11 +41031,11 @@ C3N-05991.MethArray.Green.T C3N-05991 GBM Methylation Array tumor CPT0378550006 C3N-05991.MethArray.Red.T C3N-05991 GBM Methylation Array tumor CPT0378550006 205555390157_R08C01_Red.idat 13677955 IDAT Red NA CPTAC3 32afbfd3-a0a5-4a19-8323-a110da686f9e ae187eb0e08c2e84707259fad3c03129 { 'aliquot_tag': 'ALQ_692e9f80', 'gdc_sample_type': 'Primary Tumor' } C3N-05991.miRNA-Seq.T C3N-05991 GBM miRNA-Seq tumor CPT0378550009 201209_UNC32-K00270_0265_AHJ55WBBXY_GTAGAG_S33_L007_R1_001.unaln.bam 330675528 BAM unaligned CPTAC3 2063c44a-250e-4eb9-86ec-0fb033ec0fc3 8b4351e5a1b9d02a3fd68719d50b104e { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor' } C3N-05991.miRNA-Seq.T.hg38 C3N-05991 GBM miRNA-Seq tumor CPT0378550009 abd9c74f-2f86-4d33-a671-88896aec0509_mirnaseq_gdc_realn.bam 377206395 BAM harmonized CPTAC3 d802bdcc-83a8-4d67-a3b5-51d07dae66c1 bcda18ea5b1b731f3bbc42149e7a1ebf { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor' } -C3N-05991.RNA-Seq.chimeric.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 dd394b89-44a8-460a-8b64-7cbf0204720d.rna_seq.chimeric.gdc_realn.bam 357373653 BAM chimeric harmonized CPTAC3 04890910-890f-4c9f-9241-6002bd061854 314d16971f0fd74b307f3070d7c45bd3 { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor' } -C3N-05991.RNA-Seq.genomic.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 dd394b89-44a8-460a-8b64-7cbf0204720d.rna_seq.genomic.gdc_realn.bam 7693983214 BAM genomic harmonized CPTAC3 f28badf7-14df-46d3-a7fb-b442cd884c4a c58900b2d62a1542c4eab0d9d9005ec2 { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor' } -C3N-05991.RNA-Seq.R1_L006.T C3N-05991 GBM RNA-Seq tumor CPT0378550009 201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R1_001.fastq.gz 3791627858 FASTQ R1_L006 unaligned CPTAC3 f3fdfc5e-7311-4d86-ac76-83d954c22674 1d0265548cd94912e5ec5ba36bd713f6 { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor' } -C3N-05991.RNA-Seq.R2_L006.T C3N-05991 GBM RNA-Seq tumor CPT0378550009 201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R2_001.fastq.gz 4075268377 FASTQ R2_L006 unaligned CPTAC3 8f4a08f1-2571-471f-9eac-c774275f33f4 fc645b0cbf17515a41a187a5ecb9018c { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor' } -C3N-05991.RNA-Seq.transcriptome.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 dd394b89-44a8-460a-8b64-7cbf0204720d.rna_seq.transcriptome.gdc_realn.bam 6749409553 BAM transcriptome harmonized CPTAC3 a5d7e741-122c-42d1-9a3a-f6c544f2dfe5 19f1df63be2409d4df73f12fa2326963 { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor' } +C3N-05991.RNA-Seq.chimeric.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 30901dfb-5d00-42d0-bf04-22194bba73d7.rna_seq.chimeric.gdc_realn.bam 357388540 BAM chimeric harmonized CPTAC3 fd79f425-5690-4046-8e42-967c58119955 ead5b9312579cc65d0e98a34c52d3cf7 { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor' } +C3N-05991.RNA-Seq.genomic.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 30901dfb-5d00-42d0-bf04-22194bba73d7.rna_seq.genomic.gdc_realn.bam 7699962451 BAM genomic harmonized CPTAC3 5584991c-ac0e-4df5-add0-4f2303223862 27c4973201f1d1b05881a0165310bf25 { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor' } +C3N-05991.RNA-Seq.R1_L006.T C3N-05991 GBM RNA-Seq tumor CPT0378550009 201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R1_001.fastq.gz 3791627858 FASTQ R1_L006 unaligned CPTAC3 f3fdfc5e-7311-4d86-ac76-83d954c22674 1d0265548cd94912e5ec5ba36bd713f6 { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C3N-05991.RNA-Seq.R2_L006.T C3N-05991 GBM RNA-Seq tumor CPT0378550009 201103_UNC31-K00269_0292_AHJ772BBXY_TAATACAG-ATATTCAC_S24_L006_R2_001.fastq.gz 4075268377 FASTQ R2_L006 unaligned CPTAC3 8f4a08f1-2571-471f-9eac-c774275f33f4 fc645b0cbf17515a41a187a5ecb9018c { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C3N-05991.RNA-Seq.transcriptome.T.hg38 C3N-05991 GBM RNA-Seq tumor CPT0378550009 30901dfb-5d00-42d0-bf04-22194bba73d7.rna_seq.transcriptome.gdc_realn.bam 7843415219 BAM transcriptome harmonized CPTAC3 63be8b58-ce8a-4abf-b8b0-f010e1268ee1 effbd4a0fe748b03a1672c9dda690524 { 'aliquot_tag': 'ALQ_f9918211', 'gdc_sample_type': 'Primary Tumor' } C3N-05991.WGS.N C3N-05991 GBM WGS blood_normal CPT0378610002 CPT0378610002.WholeGenome.RP-2158.bam 23981701662 BAM aligned CPTAC3 f5795e82-aba0-48f6-8047-c5c550426671 300e104dd130cac4fa652133a388e26b { 'aliquot_tag': 'ALQ_1d578ff7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05991.WGS.N.hg38 C3N-05991 GBM WGS blood_normal CPT0378610002 099752ff-7fa5-4eb0-831a-09e5a211d5c3_wgs_gdc_realn.bam 71819625554 BAM harmonized CPTAC3 39243f84-1aee-49d4-8a00-32c396a850f3 c0b6bcaf135ae44980f7501e4341fa0c { 'aliquot_tag': 'ALQ_1d578ff7', 'gdc_sample_type': 'Blood Derived Normal' } C3N-05991.WGS.T C3N-05991 GBM WGS tumor CPT0378550006 CPT0378550006.WholeGenome.RP-2158.bam 29842642374 BAM aligned CPTAC3 28a48366-c183-4b4b-ab8b-bdb8b3cc5b82 5c107443e870154fe136067aeb95f675 { 'aliquot_tag': 'ALQ_692e9f80', 'gdc_sample_type': 'Primary Tumor' } @@ -38610,204 +41047,325 @@ C3N-05991.WXS.T.hg38 C3N-05991 GBM WXS tumor CPT0378550006 0ca72fda-2cdf-415a-b5 C464694.DUP_7319b796.MethArray.Green.T C464694 GBM Methylation Array tumor 7316UP-1220 205854140144_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 212c2e15-a962-429c-bd1f-9f5f1177282d 50b3c3adde4024bdf3b8376f048cfcaf { 'aliquot_tag': 'DUP_7319b796', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C464694.DUP_7319b796.MethArray.Red.T C464694 GBM Methylation Array tumor 7316UP-1220 205854140144_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 4321c33c-0477-4178-8f26-4035aa8920e3 53a5efeb91fec196485c5d818b20cdf7 { 'aliquot_tag': 'DUP_7319b796', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C464694.DUP_7319b796.WGS.T C464694 GBM WGS tumor 7316UP-1220 7316UP-1220.WholeGenome.RP-2158.bam 50906731344 BAM aligned CPTAC3 2cfe9f7d-a40a-4b0d-92de-8dd2e369dfe9 5839ad43a00ff69295864978d1bfba47 { 'aliquot_tag': 'DUP_7319b796', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C464694.DUP_7319b796.WGS.T.hg38 C464694 GBM WGS tumor 7316UP-1220 737a37b7-31a5-4187-a4fa-5e7171bb6569_wgs_gdc_realn.bam 150532430539 BAM harmonized CPTAC3 77c6fb07-df6b-4048-a13a-4dd4df35c0e2 bc8ca27c36b93e32f2b52d9175adfd56 { 'aliquot_tag': 'DUP_7319b796', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C464694.DUP_7319b796.WXS.T C464694 GBM WXS tumor 7316UP-1220 7316UP-1220.WholeExome.RP-1303.bam 22942475909 BAM aligned CPTAC3 1b1eb9c9-e46d-4867-8ca9-7b90245fb6ac 023d4b7af206ae23cf22b1cef24f44e6 { 'aliquot_tag': 'DUP_7319b796', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C464694.DUP_7319b796.WXS.T.hg38 C464694 GBM WXS tumor 7316UP-1220 737a37b7-31a5-4187-a4fa-5e7171bb6569_wxs_gdc_realn.bam 31018496566 BAM harmonized CPTAC3 00eb9000-e8b4-4b57-8f08-45b92aaba916 b5f769d8312eda67025f8c777f7dab7b { 'aliquot_tag': 'DUP_7319b796', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C464694.MethArray.Green.R C464694 GBM Methylation Array recurrent_tumor 7316UP-2165 205854140148_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 1d5b76d6-61d0-4d7e-b5f3-f9d1f6032a9b 26d0cb9fa695b6c5c1bee1d6fe1404af { 'aliquot_tag': 'ALQ_77ec97aa', 'gdc_sample_type': 'Recurrent Tumor' } C464694.MethArray.Red.R C464694 GBM Methylation Array recurrent_tumor 7316UP-2165 205854140148_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 ce4c594a-0bee-4a5f-b1be-4a8e5ee49bdb 88c6ccf21a239c159ac3a398483b3227 { 'aliquot_tag': 'ALQ_77ec97aa', 'gdc_sample_type': 'Recurrent Tumor' } C464694.miRNA-Seq.T C464694 GBM miRNA-Seq tumor 7316UP-1220-1104806 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGAAA_S19_L003_R1_001.unaln.bam 369818581 BAM unaligned CPTAC3 c199d8d6-379a-4af8-a9d4-ed6e4b614fb0 ea112e1b36fed716827ebd89f58efe16 { 'aliquot_tag': 'ALQ_b4191726', 'gdc_sample_type': 'Primary Tumor' } -C464694.RNA-Seq.R1_L005.T C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R1_001.fastq.gz 4211420045 FASTQ R1_L005 unaligned CPTAC3 e953a951-3a91-442e-ad44-8ebde2357ba1 5233571714b1ad08855987a0e21637bf { 'aliquot_tag': 'ALQ_b4191726', 'gdc_sample_type': 'Primary Tumor' } -C464694.RNA-Seq.R2_L005.T C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R2_001.fastq.gz 4535404399 FASTQ R2_L005 unaligned CPTAC3 dfd4d083-3696-4f1a-9a7b-9613cb26d82d 40639d47dfecbf5ca2bf8b47b9bb8e1a { 'aliquot_tag': 'ALQ_b4191726', 'gdc_sample_type': 'Primary Tumor' } +C464694.miRNA-Seq.T.hg38 C464694 GBM miRNA-Seq tumor 7316UP-1220-1104806 207cc3a9-ce33-45cd-ae40-b736dfee9de2_mirnaseq_gdc_realn.bam 450526376 BAM harmonized CPTAC3 497bbdbd-6e1b-40a6-b101-541d27a5a22c 61480a9842dbf1edc62578fb947ad66e { 'aliquot_tag': 'ALQ_b4191726', 'gdc_sample_type': 'Primary Tumor' } +C464694.RNA-Seq.chimeric.T.hg38 C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 7011b243-964d-43f0-978a-97fa3a0eec4b.rna_seq.chimeric.gdc_realn.bam 87309393 BAM chimeric harmonized CPTAC3 e7928408-7006-428e-9833-d169af22ef92 718ce263befc7d86f9f63d16bf528d81 { 'aliquot_tag': 'ALQ_b4191726', 'gdc_sample_type': 'Primary Tumor' } +C464694.RNA-Seq.genomic.T.hg38 C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 7011b243-964d-43f0-978a-97fa3a0eec4b.rna_seq.genomic.gdc_realn.bam 9062562582 BAM genomic harmonized CPTAC3 cd31d639-0b9c-406d-9849-bfef9baefc0a 195eedd31a17bed3a37067d36e755505 { 'aliquot_tag': 'ALQ_b4191726', 'gdc_sample_type': 'Primary Tumor' } +C464694.RNA-Seq.R1_L005.T C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R1_001.fastq.gz 4211420045 FASTQ R1_L005 unaligned CPTAC3 e953a951-3a91-442e-ad44-8ebde2357ba1 5233571714b1ad08855987a0e21637bf { 'aliquot_tag': 'ALQ_b4191726', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L005' } +C464694.RNA-Seq.R2_L005.T C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 210713_UNC32-K00270_0291_AHLK5VBBXY_AATCCGGA-CTACAGTT_S17_L005_R2_001.fastq.gz 4535404399 FASTQ R2_L005 unaligned CPTAC3 dfd4d083-3696-4f1a-9a7b-9613cb26d82d 40639d47dfecbf5ca2bf8b47b9bb8e1a { 'aliquot_tag': 'ALQ_b4191726', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L005' } +C464694.RNA-Seq.transcriptome.T.hg38 C464694 GBM RNA-Seq tumor 7316UP-1220-1104806 7011b243-964d-43f0-978a-97fa3a0eec4b.rna_seq.transcriptome.gdc_realn.bam 13857049571 BAM transcriptome harmonized CPTAC3 d7f8e5ba-68aa-421c-9c66-850b4d543f88 5e3e0cf4a2edf4bf941561b037f973cc { 'aliquot_tag': 'ALQ_b4191726', 'gdc_sample_type': 'Primary Tumor' } C464694.WGS.N C464694 GBM WGS blood_normal 7316UP-1220-1105273 7316UP-1220-1105273.WholeGenome.RP-2158.bam 58056642254 BAM aligned CPTAC3 8de7ce32-b53a-4bd8-83f9-e8584ffa7bd4 5c2d8a5c6b7e42314c9f21c2f30ebe68 { 'aliquot_tag': 'ALQ_3e1997dd', 'gdc_sample_type': 'Blood Derived Normal' } +C464694.WGS.N.hg38 C464694 GBM WGS blood_normal 7316UP-1220-1105273 79ab7960-710a-4fb4-b7fb-d8d374ac0273_wgs_gdc_realn.bam 171009546064 BAM harmonized CPTAC3 bd0412f4-6d85-4fde-a8da-4da9f281836f 70005d6b3f73fc939c811e7938fc4e91 { 'aliquot_tag': 'ALQ_3e1997dd', 'gdc_sample_type': 'Blood Derived Normal' } C464694.WGS.R C464694 GBM WGS recurrent_tumor 7316UP-2165 7316UP-2165.WholeGenome.RP-2158.bam 59730720406 BAM aligned CPTAC3 49907439-eaca-4bc0-bb26-e5cf4ef4b055 824010f782891f63355558dcd5d5afe4 { 'aliquot_tag': 'ALQ_77ec97aa', 'gdc_sample_type': 'Recurrent Tumor' } +C464694.WGS.R.hg38 C464694 GBM WGS recurrent_tumor 7316UP-2165 21f8608a-3452-4c72-be68-f12c4c3ec33a_wgs_gdc_realn.bam 180690918935 BAM harmonized CPTAC3 1de50e6a-57e7-497f-a6fb-33d85aeda79a 138f245ecf718706592d724eb90b87ad { 'aliquot_tag': 'ALQ_77ec97aa', 'gdc_sample_type': 'Recurrent Tumor' } C464694.WXS.N C464694 GBM WXS blood_normal 7316UP-1220-1105273 7316UP-1220-1105273.WholeExome.RP-1303.bam 34171762075 BAM aligned CPTAC3 ae674995-a428-4617-a594-a46bd0a14690 d4813def900172a4870d1e6c6d0701c9 { 'aliquot_tag': 'ALQ_3e1997dd', 'gdc_sample_type': 'Blood Derived Normal' } +C464694.WXS.N.hg38 C464694 GBM WXS blood_normal 7316UP-1220-1105273 79ab7960-710a-4fb4-b7fb-d8d374ac0273_wxs_gdc_realn.bam 46629574666 BAM harmonized CPTAC3 51e69507-c1db-4630-bbd3-dfb6e176132b ed215e962448dd6047279570cd656868 { 'aliquot_tag': 'ALQ_3e1997dd', 'gdc_sample_type': 'Blood Derived Normal' } C464694.WXS.R C464694 GBM WXS recurrent_tumor 7316UP-2165 7316UP-2165.WholeExome.RP-1303.bam 21435410858 BAM aligned CPTAC3 e065a5af-faad-4155-aebc-d191be6cc1fa 3e72c6c922523d3be5cb85fd89bcc47e { 'aliquot_tag': 'ALQ_77ec97aa', 'gdc_sample_type': 'Recurrent Tumor' } +C464694.WXS.R.hg38 C464694 GBM WXS recurrent_tumor 7316UP-2165 21f8608a-3452-4c72-be68-f12c4c3ec33a_wxs_gdc_realn.bam 29259564952 BAM harmonized CPTAC3 14392cb7-f165-4b08-8caf-bfd9a7875b72 16f16685f362bb5aa9303c0cdafe727d { 'aliquot_tag': 'ALQ_77ec97aa', 'gdc_sample_type': 'Recurrent Tumor' } C464694.WXS.T C464694 GBM WXS tumor 7316UP-1220-1105271 7316UP-1220-1105271.WholeExome.RP-1303.bam 23752991278 BAM aligned CPTAC3 680f0ed2-f4b3-4831-afb6-1758fa985db4 188d88b682c63fd90a1737d0a62f4710 { 'aliquot_tag': 'ALQ_d017f6f1', 'gdc_sample_type': 'Primary Tumor' } +C464694.WXS.T.hg38 C464694 GBM WXS tumor 7316UP-1220-1105271 31b51dd4-c4fe-4d97-ae09-698217519667_wxs_gdc_realn.bam 32446858344 BAM harmonized CPTAC3 44dd95c6-0058-43cc-8f40-781d00ea6f46 1daeb9e1a5ca1de2c08b2905e5489b11 { 'aliquot_tag': 'ALQ_d017f6f1', 'gdc_sample_type': 'Primary Tumor' } C524103.DUP_aee3de0f.MethArray.Green.T C524103 GBM Methylation Array tumor 7316UP-1302 205705520032_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 3304fdae-a424-42d5-b3a5-334d3f317c40 98f2561f12646c2454d007919c8b6410 { 'aliquot_tag': 'DUP_aee3de0f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C524103.DUP_aee3de0f.MethArray.Red.T C524103 GBM Methylation Array tumor 7316UP-1302 205705520032_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 53deb417-0eb3-46a7-a244-8f0be240118c 309ebf6b6e6a476d7ecf43744a1a5ace { 'aliquot_tag': 'DUP_aee3de0f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C524103.DUP_aee3de0f.WGS.T C524103 GBM WGS tumor 7316UP-1302 7316UP-1302.WholeGenome.RP-2158.bam 55198852451 BAM aligned CPTAC3 fd71f293-e7f0-4982-abd7-1a510b432306 040393ee5d9d38028577bacd01834b1f { 'aliquot_tag': 'DUP_aee3de0f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C524103.DUP_aee3de0f.WGS.T.hg38 C524103 GBM WGS tumor 7316UP-1302 4c95a675-d17a-40a7-b77f-a2389895f7fe_wgs_gdc_realn.bam 171540870167 BAM harmonized CPTAC3 a6ec178b-fa93-4486-9b6f-3d1f0392fa4e d25074048cea82003311bbdf8de284bf { 'aliquot_tag': 'DUP_aee3de0f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C524103.DUP_aee3de0f.WXS.T C524103 GBM WXS tumor 7316UP-1302 7316UP-1302.WholeExome.RP-1303.bam 26476635087 BAM aligned CPTAC3 b9850345-daa3-4b02-af56-35927a4b6bab 4be8f0c6f0f30dba18708c1659351f58 { 'aliquot_tag': 'DUP_aee3de0f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C524103.DUP_aee3de0f.WXS.T.hg38 C524103 GBM WXS tumor 7316UP-1302 4c95a675-d17a-40a7-b77f-a2389895f7fe_wxs_gdc_realn.bam 35777446418 BAM harmonized CPTAC3 35d02b21-b274-4b7c-ac81-9f4a5dd1176d 8ba56fb7f694a2c4c8571ccb88d9f37a { 'aliquot_tag': 'DUP_aee3de0f', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C524103.DUP_d3942a4a.MethArray.Green.R C524103 GBM Methylation Array recurrent_tumor 7316UP-1352 205555380005_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 56256210-86b4-458e-b7b2-b827e6be87d4 3e939bf3a12cd6f231f3c0cc6b3d5d48 { 'aliquot_tag': 'DUP_d3942a4a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C524103.DUP_d3942a4a.MethArray.Red.R C524103 GBM Methylation Array recurrent_tumor 7316UP-1352 205555380005_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a819416b-204f-4b9f-ab2a-1f5cc4a5f5f5 d566d25faf9aaa6b4fab62f83556690a { 'aliquot_tag': 'DUP_d3942a4a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C524103.DUP_d3942a4a.WGS.R C524103 GBM WGS recurrent_tumor 7316UP-1352 7316UP-1352.WholeGenome.RP-2158.bam 59412790773 BAM aligned CPTAC3 2806f70f-3e38-44d6-9b0a-fde23338695e e7cfeb715ac64f4da7a9af13eef31124 { 'aliquot_tag': 'DUP_d3942a4a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C524103.DUP_d3942a4a.WGS.R.hg38 C524103 GBM WGS recurrent_tumor 7316UP-1352 262ba396-1da5-4506-87a1-7f1c057067fd_wgs_gdc_realn.bam 175620533085 BAM harmonized CPTAC3 aeca55f7-fffe-481c-aec4-b35c0c520f17 90718821e3665c31c5c8270c419562d8 { 'aliquot_tag': 'DUP_d3942a4a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C524103.DUP_d3942a4a.WXS.R C524103 GBM WXS recurrent_tumor 7316UP-1352 7316UP-1352.WholeExome.RP-1303.bam 31780811964 BAM aligned CPTAC3 8cf5d4a7-4910-4ebf-867d-53de994c51e9 4dcf76068de8dc456650925b21daa7c6 { 'aliquot_tag': 'DUP_d3942a4a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C524103.DUP_d3942a4a.WXS.R.hg38 C524103 GBM WXS recurrent_tumor 7316UP-1352 262ba396-1da5-4506-87a1-7f1c057067fd_wxs_gdc_realn.bam 43148865520 BAM harmonized CPTAC3 90cbaa83-0603-40d1-82ad-5e0fe0328c15 3f57e83f5728156ddd6131ed7e4db023 { 'aliquot_tag': 'DUP_d3942a4a', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C524103.miRNA-Seq.R C524103 GBM miRNA-Seq recurrent_tumor 7316UP-1352-1104794 210817_UNC31-K00269_0302_AHLCTHBBXY_CAGATC_S26_L002_R1_001.unaln.bam 208885492 BAM unaligned CPTAC3 9c405e8f-aa7c-485a-8e25-06319707110f 1e0bb4246702c71b19016c72d50ff083 { 'aliquot_tag': 'ALQ_8d2d6641', 'gdc_sample_type': 'Recurrent Tumor' } +C524103.miRNA-Seq.R.hg38 C524103 GBM miRNA-Seq recurrent_tumor 7316UP-1352-1104794 2998ae4a-6249-4433-9396-64b6397ebc6f_mirnaseq_gdc_realn.bam 247802653 BAM harmonized CPTAC3 1b94a53a-0ef3-4a71-afa5-d2f214097cdc dbe1d8db3b86d44b5d0e460b8848830b { 'aliquot_tag': 'ALQ_8d2d6641', 'gdc_sample_type': 'Recurrent Tumor' } C524103.miRNA-Seq.T C524103 GBM miRNA-Seq tumor 7316UP-1302-1104811 210817_UNC31-K00269_0302_AHLCTHBBXY_GGTAGC_S47_L003_R1_001.unaln.bam 327472214 BAM unaligned CPTAC3 5d1e8951-7217-4a8c-8496-0c768deb3a80 14a020f5a81d7f56d1ea795881eac01d { 'aliquot_tag': 'ALQ_d8eb94bf', 'gdc_sample_type': 'Primary Tumor' } -C524103.RNA-Seq.R1_L005.R C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R1_001.fastq.gz 2870086974 FASTQ R1_L005 unaligned CPTAC3 22a329b1-e16e-4f74-9776-f89111085a6e 75b51918415f8d52a6669e2a84032240 { 'aliquot_tag': 'ALQ_8d2d6641', 'gdc_sample_type': 'Recurrent Tumor' } -C524103.RNA-Seq.R1_L006.T C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R1_001.fastq.gz 3191813062 FASTQ R1_L006 unaligned CPTAC3 afe00443-10de-4f18-b3cc-feda64a0ed5b 72421a542953b915705122033d30641b { 'aliquot_tag': 'ALQ_d8eb94bf', 'gdc_sample_type': 'Primary Tumor' } -C524103.RNA-Seq.R2_L005.R C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R2_001.fastq.gz 3112261192 FASTQ R2_L005 unaligned CPTAC3 1c2a8eae-a280-4bda-8053-bd1f73695d64 e28ce306b4b78cb6397887d886fce547 { 'aliquot_tag': 'ALQ_8d2d6641', 'gdc_sample_type': 'Recurrent Tumor' } -C524103.RNA-Seq.R2_L006.T C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R2_001.fastq.gz 3472543146 FASTQ R2_L006 unaligned CPTAC3 bbbc3545-1937-4afe-9d74-28e653c9f64d c76216a3140723e8a1bc386bfda0c766 { 'aliquot_tag': 'ALQ_d8eb94bf', 'gdc_sample_type': 'Primary Tumor' } +C524103.miRNA-Seq.T.hg38 C524103 GBM miRNA-Seq tumor 7316UP-1302-1104811 d8eec5bf-4983-4450-ade1-13008e3fab41_mirnaseq_gdc_realn.bam 364888323 BAM harmonized CPTAC3 5733b734-1d9e-4f9d-960e-fc0bb59e3f24 db5f162c7682f5a306426f0469263908 { 'aliquot_tag': 'ALQ_d8eb94bf', 'gdc_sample_type': 'Primary Tumor' } +C524103.RNA-Seq.chimeric.R.hg38 C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 fc90de75-4ef2-414d-8786-bf4c5aeb26ac.rna_seq.chimeric.gdc_realn.bam 29885194 BAM chimeric harmonized CPTAC3 8608c7fd-502d-487c-aff5-c3a208f761fe 6c3370dd204fede6e8bd5df63680ec9b { 'aliquot_tag': 'ALQ_8d2d6641', 'gdc_sample_type': 'Recurrent Tumor' } +C524103.RNA-Seq.chimeric.T.hg38 C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 6c62b846-0606-4a11-9266-27e1c7d8ea47.rna_seq.chimeric.gdc_realn.bam 23427159 BAM chimeric harmonized CPTAC3 eafef641-2356-4ff5-a189-76d635dd90c9 fde72fcc9525162e915efde7542aafac { 'aliquot_tag': 'ALQ_d8eb94bf', 'gdc_sample_type': 'Primary Tumor' } +C524103.RNA-Seq.genomic.R.hg38 C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 fc90de75-4ef2-414d-8786-bf4c5aeb26ac.rna_seq.genomic.gdc_realn.bam 6665188457 BAM genomic harmonized CPTAC3 86de2fe4-4f4c-473a-9b3c-3ad8304105a2 54745cb7cc2aa266f0900a81d7836cec { 'aliquot_tag': 'ALQ_8d2d6641', 'gdc_sample_type': 'Recurrent Tumor' } +C524103.RNA-Seq.genomic.T.hg38 C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 6c62b846-0606-4a11-9266-27e1c7d8ea47.rna_seq.genomic.gdc_realn.bam 9347625606 BAM genomic harmonized CPTAC3 b563f90b-b773-4b13-b4cf-a219780019ac 99451fbaf0bfa429dab40d1dc67694d0 { 'aliquot_tag': 'ALQ_d8eb94bf', 'gdc_sample_type': 'Primary Tumor' } +C524103.RNA-Seq.R1_L005.R C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R1_001.fastq.gz 2870086974 FASTQ R1_L005 unaligned CPTAC3 22a329b1-e16e-4f74-9776-f89111085a6e 75b51918415f8d52a6669e2a84032240 { 'aliquot_tag': 'ALQ_8d2d6641', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L005' } +C524103.RNA-Seq.R1_L006.T C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R1_001.fastq.gz 3191813062 FASTQ R1_L006 unaligned CPTAC3 afe00443-10de-4f18-b3cc-feda64a0ed5b 72421a542953b915705122033d30641b { 'aliquot_tag': 'ALQ_d8eb94bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L006' } +C524103.RNA-Seq.R2_L005.R C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 210811_UNC31-K00269_0301_AHLLC5BBXY_CATAATAC-TTCTAACG_S18_L005_R2_001.fastq.gz 3112261192 FASTQ R2_L005 unaligned CPTAC3 1c2a8eae-a280-4bda-8053-bd1f73695d64 e28ce306b4b78cb6397887d886fce547 { 'aliquot_tag': 'ALQ_8d2d6641', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L005' } +C524103.RNA-Seq.R2_L006.T C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 210713_UNC32-K00270_0291_AHLK5VBBXY_GCTTGTCA-GAACATAC_S23_L006_R2_001.fastq.gz 3472543146 FASTQ R2_L006 unaligned CPTAC3 bbbc3545-1937-4afe-9d74-28e653c9f64d c76216a3140723e8a1bc386bfda0c766 { 'aliquot_tag': 'ALQ_d8eb94bf', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L006' } +C524103.RNA-Seq.transcriptome.R.hg38 C524103 GBM RNA-Seq recurrent_tumor 7316UP-1352-1104794 fc90de75-4ef2-414d-8786-bf4c5aeb26ac.rna_seq.transcriptome.gdc_realn.bam 14190096130 BAM transcriptome harmonized CPTAC3 11c689c7-8067-4932-80bc-954d9e41d076 7c6350a67434da864e9e972fc3acc3f5 { 'aliquot_tag': 'ALQ_8d2d6641', 'gdc_sample_type': 'Recurrent Tumor' } +C524103.RNA-Seq.transcriptome.T.hg38 C524103 GBM RNA-Seq tumor 7316UP-1302-1104811 6c62b846-0606-4a11-9266-27e1c7d8ea47.rna_seq.transcriptome.gdc_realn.bam 13208122277 BAM transcriptome harmonized CPTAC3 c0490bff-0058-40ff-8392-4e820eff1acd 90259b5a439958c02641dc1f4082209a { 'aliquot_tag': 'ALQ_d8eb94bf', 'gdc_sample_type': 'Primary Tumor' } C524103.WGS.N C524103 GBM WGS blood_normal 7316UP-1302-1105274 7316UP-1302-1105274.WholeGenome.RP-2158.bam 48734475668 BAM aligned CPTAC3 19ffaaad-e881-46e2-9a11-aecc70e586e9 26e89fab98de5e8d3edf3405a9444fef { 'aliquot_tag': 'ALQ_4bf02505', 'gdc_sample_type': 'Blood Derived Normal' } +C524103.WGS.N.hg38 C524103 GBM WGS blood_normal 7316UP-1302-1105274 38c9ec6a-22fe-4fc1-a8b7-1f34921007e1_wgs_gdc_realn.bam 145571506954 BAM harmonized CPTAC3 9e1d34a0-bb29-454f-846b-28c073c1adcf edfaa4cbf7deaacf4cbed9e8dbdd647f { 'aliquot_tag': 'ALQ_4bf02505', 'gdc_sample_type': 'Blood Derived Normal' } C524103.WGS.R C524103 GBM WGS recurrent_tumor 7316UP-1352-1105258 7316UP-1352-1105258.WholeGenome.RP-2158.bam 42916365920 BAM aligned CPTAC3 d25caa5c-4a24-45b8-8a75-10961ce9a232 4eb9b6ec7ff3656a7aed711fe6811069 { 'aliquot_tag': 'ALQ_9659c0e8', 'gdc_sample_type': 'Recurrent Tumor' } +C524103.WGS.R.hg38 C524103 GBM WGS recurrent_tumor 7316UP-1352-1105258 10c4c618-6b30-457c-8637-f9d771de41a6_wgs_gdc_realn.bam 128584101381 BAM harmonized CPTAC3 da74e522-7f6e-4a08-9e1d-30fb7c10dae8 2a11d7917486075522f3843b056ed56c { 'aliquot_tag': 'ALQ_9659c0e8', 'gdc_sample_type': 'Recurrent Tumor' } C524103.WXS.N C524103 GBM WXS blood_normal 7316UP-1302-1105274 7316UP-1302-1105274.WholeExome.RP-1303.bam 27656891961 BAM aligned CPTAC3 6eaa6ac2-44b3-4444-8c0d-a25e08e96978 d10ea801452598fef6324db044192b52 { 'aliquot_tag': 'ALQ_4bf02505', 'gdc_sample_type': 'Blood Derived Normal' } +C524103.WXS.N.hg38 C524103 GBM WXS blood_normal 7316UP-1302-1105274 38c9ec6a-22fe-4fc1-a8b7-1f34921007e1_wxs_gdc_realn.bam 37550402224 BAM harmonized CPTAC3 bb991570-6c92-416b-a859-6ead7c509eb3 2df2ddc06d31500b958c921489aea6ce { 'aliquot_tag': 'ALQ_4bf02505', 'gdc_sample_type': 'Blood Derived Normal' } C524103.WXS.R C524103 GBM WXS recurrent_tumor 7316UP-1352-1105258 7316UP-1352-1105258.WholeExome.RP-1303.bam 28254822885 BAM aligned CPTAC3 a987daf4-a1a0-4054-a9f2-53ef20187d07 9108f5e635dc411d943db3d5326f3667 { 'aliquot_tag': 'ALQ_9659c0e8', 'gdc_sample_type': 'Recurrent Tumor' } +C524103.WXS.R.hg38 C524103 GBM WXS recurrent_tumor 7316UP-1352-1105258 10c4c618-6b30-457c-8637-f9d771de41a6_wxs_gdc_realn.bam 38174594649 BAM harmonized CPTAC3 8c893ed0-d3bf-4019-8b73-afc8a5ab818f 895dc6884b5f3b7672dc37f3a9629757 { 'aliquot_tag': 'ALQ_9659c0e8', 'gdc_sample_type': 'Recurrent Tumor' } C524103.WXS.T C524103 GBM WXS tumor 7316UP-1302-1105204 7316UP-1302-1105204.WholeExome.RP-1303.bam 24692723272 BAM aligned CPTAC3 cd8edce2-d841-4514-8c43-806379e3926f 150ea7817acf2a33804500465fc789aa { 'aliquot_tag': 'ALQ_4b1b3c2', 'gdc_sample_type': 'Primary Tumor' } +C524103.WXS.T.hg38 C524103 GBM WXS tumor 7316UP-1302-1105204 ffd6163a-085f-4213-89e4-5bbc68bca404_wxs_gdc_realn.bam 33667946602 BAM harmonized CPTAC3 2b0b81ce-7556-4be8-bf5f-6f359239cc39 cdbcfd33ec885b6a35e8b42d775c8b9a { 'aliquot_tag': 'ALQ_4b1b3c2', 'gdc_sample_type': 'Primary Tumor' } C621273.DUP_58508890.MethArray.Green.R C621273 GBM Methylation Array recurrent_tumor 7316UP-1614 205854150039_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 d8cfbfe2-4d7c-44f0-9511-db0c4f24acbf d48c9598695f205531feb9e92ff05102 { 'aliquot_tag': 'DUP_58508890', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C621273.DUP_58508890.MethArray.Red.R C621273 GBM Methylation Array recurrent_tumor 7316UP-1614 205854150039_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 a045d8ec-2939-4ab0-9efa-cf0136842163 f0b0c6cdca68232696d668581e0519cf { 'aliquot_tag': 'DUP_58508890', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C621273.DUP_58508890.WGS.R C621273 GBM WGS recurrent_tumor 7316UP-1614 7316UP-1614.WholeGenome.RP-2158.bam 49320276389 BAM aligned CPTAC3 8b170826-9dea-4e38-89df-f3e04a145981 a267e6fe122f985c0e268f6907294475 { 'aliquot_tag': 'DUP_58508890', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C621273.DUP_58508890.WGS.R.hg38 C621273 GBM WGS recurrent_tumor 7316UP-1614 e9d2de13-33cd-4d7a-b218-763b81e81f25_wgs_gdc_realn.bam 143277667858 BAM harmonized CPTAC3 ec5d09c4-8da5-4e53-b3d9-5f2448acdff5 7085e87fbb69f5f127d646ff6f8129b7 { 'aliquot_tag': 'DUP_58508890', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C621273.DUP_58508890.WXS.R C621273 GBM WXS recurrent_tumor 7316UP-1614 7316UP-1614.WholeExome.RP-1303.bam 22247999080 BAM aligned CPTAC3 5743f054-3db2-40c1-8933-1e6cf7f0f395 f6715fec951aacd2d79117970bd01189 { 'aliquot_tag': 'DUP_58508890', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C621273.DUP_58508890.WXS.R.hg38 C621273 GBM WXS recurrent_tumor 7316UP-1614 e9d2de13-33cd-4d7a-b218-763b81e81f25_wxs_gdc_realn.bam 30296335794 BAM harmonized CPTAC3 8de145d0-7789-4cbe-bbc3-3c00a03d9daf 078a75a6e5baa58b3efe405f25ab972d { 'aliquot_tag': 'DUP_58508890', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C621273.miRNA-Seq.R C621273 GBM miRNA-Seq recurrent_tumor 7316UP-1614-1104792 210817_UNC31-K00269_0302_AHLCTHBBXY_ACAGTG_S22_L002_R1_001.unaln.bam 252996380 BAM unaligned CPTAC3 f854017d-3c0d-4e9e-9095-1cd25132dc95 ca4397fd5e5e20411f44fd0006020d2e { 'aliquot_tag': 'ALQ_6fe8b6c6', 'gdc_sample_type': 'Recurrent Tumor' } -C621273.RNA-Seq.R1_L005.R C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R1_001.fastq.gz 3601840825 FASTQ R1_L005 unaligned CPTAC3 d2076f19-ae18-4b0f-90c0-009d307bac68 808a29599743ca7aa0440a43576f0c72 { 'aliquot_tag': 'ALQ_6fe8b6c6', 'gdc_sample_type': 'Recurrent Tumor' } -C621273.RNA-Seq.R2_L005.R C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R2_001.fastq.gz 3751660538 FASTQ R2_L005 unaligned CPTAC3 208f978b-38ac-480f-ba8b-10672e7acf9d 5aaf59378fb20e4f5aaec8332e344222 { 'aliquot_tag': 'ALQ_6fe8b6c6', 'gdc_sample_type': 'Recurrent Tumor' } +C621273.miRNA-Seq.R.hg38 C621273 GBM miRNA-Seq recurrent_tumor 7316UP-1614-1104792 a10e0ee5-451e-4614-a438-6719a57b9dbf_mirnaseq_gdc_realn.bam 299013874 BAM harmonized CPTAC3 b3bd0565-6ef0-4f02-8e32-5b9e2241fe6e 52ebbc3a76573a7cfa65da88924740c7 { 'aliquot_tag': 'ALQ_6fe8b6c6', 'gdc_sample_type': 'Recurrent Tumor' } +C621273.RNA-Seq.chimeric.R.hg38 C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 d45c7c9e-7bb9-415f-8a3d-fd3cad323e5e.rna_seq.chimeric.gdc_realn.bam 56654506 BAM chimeric harmonized CPTAC3 b19f9043-8552-4f42-9290-a04f22d0242a 6e11c9fa1af40c8d15d1bc59a8746f4c { 'aliquot_tag': 'ALQ_6fe8b6c6', 'gdc_sample_type': 'Recurrent Tumor' } +C621273.RNA-Seq.genomic.R.hg38 C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 d45c7c9e-7bb9-415f-8a3d-fd3cad323e5e.rna_seq.genomic.gdc_realn.bam 7690057852 BAM genomic harmonized CPTAC3 5e634914-b72e-4e9c-ad83-1f7894b8bfa4 54a5a0a8cd018298f45a01549146463e { 'aliquot_tag': 'ALQ_6fe8b6c6', 'gdc_sample_type': 'Recurrent Tumor' } +C621273.RNA-Seq.R1_L005.R C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R1_001.fastq.gz 3601840825 FASTQ R1_L005 unaligned CPTAC3 d2076f19-ae18-4b0f-90c0-009d307bac68 808a29599743ca7aa0440a43576f0c72 { 'aliquot_tag': 'ALQ_6fe8b6c6', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L005' } +C621273.RNA-Seq.R2_L005.R C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 210713_UNC32-K00270_0291_AHLK5VBBXY_TTGGACTC-GGAAGCAG_S20_L005_R2_001.fastq.gz 3751660538 FASTQ R2_L005 unaligned CPTAC3 208f978b-38ac-480f-ba8b-10672e7acf9d 5aaf59378fb20e4f5aaec8332e344222 { 'aliquot_tag': 'ALQ_6fe8b6c6', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L005' } +C621273.RNA-Seq.transcriptome.R.hg38 C621273 GBM RNA-Seq recurrent_tumor 7316UP-1614-1104792 d45c7c9e-7bb9-415f-8a3d-fd3cad323e5e.rna_seq.transcriptome.gdc_realn.bam 16518723618 BAM transcriptome harmonized CPTAC3 02c38852-7cca-4f7e-acb9-22680509bc3f 0604d55eee6716b4cad532b366c437f1 { 'aliquot_tag': 'ALQ_6fe8b6c6', 'gdc_sample_type': 'Recurrent Tumor' } C621273.WGS.N C621273 GBM WGS blood_normal 7316UP-1614-1105218 7316UP-1614-1105218.WholeGenome.RP-2158.bam 45901157027 BAM aligned CPTAC3 b9e0471e-bc5a-4f34-97ff-974f2200a169 d5cc3843ccc56f0d3f496611d8315419 { 'aliquot_tag': 'ALQ_f993705e', 'gdc_sample_type': 'Blood Derived Normal' } +C621273.WGS.N.hg38 C621273 GBM WGS blood_normal 7316UP-1614-1105218 75a887df-8b85-437d-9a2f-de23f833d084_wgs_gdc_realn.bam 132767966103 BAM harmonized CPTAC3 206b98ac-4f65-4b9e-9466-df037d335fda 1fee0ccd1a5d5f758760d9b1191f9743 { 'aliquot_tag': 'ALQ_f993705e', 'gdc_sample_type': 'Blood Derived Normal' } C621273.WXS.N C621273 GBM WXS blood_normal 7316UP-1614-1105218 7316UP-1614-1105218.WholeExome.RP-1303.bam 20276203956 BAM aligned CPTAC3 5d3d6d7b-cca4-4002-837e-bad86e3a1a18 2e091433109db1addf0c857446f74279 { 'aliquot_tag': 'ALQ_f993705e', 'gdc_sample_type': 'Blood Derived Normal' } +C621273.WXS.N.hg38 C621273 GBM WXS blood_normal 7316UP-1614-1105218 75a887df-8b85-437d-9a2f-de23f833d084_wxs_gdc_realn.bam 27908882843 BAM harmonized CPTAC3 45c86f82-bcfc-4617-88fe-057ddca20656 21ad5fde86ef1197421daa92747e05af { 'aliquot_tag': 'ALQ_f993705e', 'gdc_sample_type': 'Blood Derived Normal' } C621273.WXS.R C621273 GBM WXS recurrent_tumor 7316UP-1614-1105255 7316UP-1614-1105255.WholeExome.RP-1303.bam 25207962561 BAM aligned CPTAC3 682ffb5a-c41d-481c-890e-4eadbc23fb23 f55e27e3724705428c4e861319df1d0f { 'aliquot_tag': 'ALQ_e34ec9e7', 'gdc_sample_type': 'Recurrent Tumor' } +C621273.WXS.R.hg38 C621273 GBM WXS recurrent_tumor 7316UP-1614-1105255 4d9473f9-d9c4-4760-9eb4-4d1d2fad1300_wxs_gdc_realn.bam 34314709584 BAM harmonized CPTAC3 5b9fddc3-220e-4e53-ad75-a91acf6a54b8 a9032614cd87d4495467de4434917b29 { 'aliquot_tag': 'ALQ_e34ec9e7', 'gdc_sample_type': 'Recurrent Tumor' } C621273.WXS.T C621273 GBM WXS tumor 7316UP-1405 7316UP-1405.WholeExome.RP-1303.bam 32756236316 BAM aligned CPTAC3 38c4cb2f-7d97-42b1-b7e5-7623a5c63d4c 52b9a5c73234edf7a6d3726c6d1c8f94 { 'aliquot_tag': 'ALQ_35c85d29', 'gdc_sample_type': 'Primary Tumor' } +C621273.WXS.T.hg38 C621273 GBM WXS tumor 7316UP-1405 3f83ce79-0cd9-4e7e-9352-726042aff7c8_wxs_gdc_realn.bam 44359010942 BAM harmonized CPTAC3 4daf5e7f-6a2a-4c49-a2cb-abb712bacfae 7a8d36bc1a00c6519bbc2bde6496ee0c { 'aliquot_tag': 'ALQ_35c85d29', 'gdc_sample_type': 'Primary Tumor' } C685110.DUP_1d688b70.MethArray.Green.R C685110 GBM Methylation Array recurrent_tumor 7316UP-1883 205707890115_R01C01_Grn.idat 13677900 IDAT Green NA CPTAC3 6a427e14-fd5d-408b-9e77-5829b1b658c6 fa958101b2ec015965e541c6d1490a5c { 'aliquot_tag': 'DUP_1d688b70', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C685110.DUP_1d688b70.MethArray.Red.R C685110 GBM Methylation Array recurrent_tumor 7316UP-1883 205707890115_R01C01_Red.idat 13677900 IDAT Red NA CPTAC3 459707ac-4a86-4040-af4f-e26d1e5d17aa 8c445ad6b9fddc448039c0d7b34bd044 { 'aliquot_tag': 'DUP_1d688b70', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C685110.DUP_1d688b70.WGS.R C685110 GBM WGS recurrent_tumor 7316UP-1883 7316UP-1883.WholeGenome.RP-2158.bam 45089603892 BAM aligned CPTAC3 a0633e65-c728-4b6f-82f1-d7a2cbbe5463 2b848756f864d1a8c4df51d0c893a141 { 'aliquot_tag': 'DUP_1d688b70', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C685110.DUP_1d688b70.WGS.R.hg38 C685110 GBM WGS recurrent_tumor 7316UP-1883 8b9f135a-a4e8-4710-9e29-d7f8884e9931_wgs_gdc_realn.bam 136525178503 BAM harmonized CPTAC3 b9284c83-5df4-4457-9b4d-287385ba3ca2 d7a50e8cd6334102e59e87903c2ea799 { 'aliquot_tag': 'DUP_1d688b70', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C685110.DUP_1d688b70.WXS.R C685110 GBM WXS recurrent_tumor 7316UP-1883 7316UP-1883.WholeExome.RP-1303.bam 30500869483 BAM aligned CPTAC3 04600742-4a51-4ad6-a18d-d4265c0dfad8 442d8d242df1c9b1fc51c4cd2b950340 { 'aliquot_tag': 'DUP_1d688b70', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C685110.DUP_1d688b70.WXS.R.hg38 C685110 GBM WXS recurrent_tumor 7316UP-1883 8b9f135a-a4e8-4710-9e29-d7f8884e9931_wxs_gdc_realn.bam 41309267209 BAM harmonized CPTAC3 ac908356-15d9-4fe6-8300-4d6bfcbc4062 142a51ed7c2bf25f0fa579fe211600e5 { 'aliquot_tag': 'DUP_1d688b70', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C685110.DUP_224ab8cc.MethArray.Green.T C685110 GBM Methylation Array tumor 7316UP-1640 205705520087_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 8517fdba-174e-4f15-8672-b5a9af370395 98ae986e4fd87ad603d438819ebb9ea6 { 'aliquot_tag': 'DUP_224ab8cc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C685110.DUP_224ab8cc.MethArray.Red.T C685110 GBM Methylation Array tumor 7316UP-1640 205705520087_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 8ce88b9b-065b-43ee-a50c-f11f75e60388 0b8faab7f4750ae4c1a72977e764a413 { 'aliquot_tag': 'DUP_224ab8cc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C685110.DUP_224ab8cc.WGS.T C685110 GBM WGS tumor 7316UP-1640 7316UP-1640.WholeGenome.RP-2158.bam 52036892496 BAM aligned CPTAC3 bed75ef0-4e54-4a9d-99f5-ec221870fc82 7814414b25f3467cc474d853de8d0dc1 { 'aliquot_tag': 'DUP_224ab8cc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C685110.DUP_224ab8cc.WGS.T.hg38 C685110 GBM WGS tumor 7316UP-1640 9cd89b80-7f2d-4caf-9599-4457c80de4cd_wgs_gdc_realn.bam 151360159146 BAM harmonized CPTAC3 8f94f328-8cf9-41b8-b087-10e5793ddcb8 016db991aebfd5173231b3dc684d2f24 { 'aliquot_tag': 'DUP_224ab8cc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C685110.DUP_224ab8cc.WXS.T C685110 GBM WXS tumor 7316UP-1640 7316UP-1640.WholeExome.RP-1303.bam 31383164675 BAM aligned CPTAC3 e7d41a50-8623-40d3-8aed-23c140a7f820 bd7f3715c003c9664e481252d508b07d { 'aliquot_tag': 'DUP_224ab8cc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C685110.DUP_224ab8cc.WXS.T.hg38 C685110 GBM WXS tumor 7316UP-1640 9cd89b80-7f2d-4caf-9599-4457c80de4cd_wxs_gdc_realn.bam 42219310210 BAM harmonized CPTAC3 0da7ee04-c471-488a-900b-44c538d9b274 1a94c4f20680bd7907feb9c01765ea65 { 'aliquot_tag': 'DUP_224ab8cc', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C685110.miRNA-Seq.R C685110 GBM miRNA-Seq recurrent_tumor 7316UP-1883-1104817 210817_UNC31-K00269_0302_AHLCTHBBXY_CACCGG_S5_L003_R1_001.unaln.bam 299614913 BAM unaligned CPTAC3 d362451e-c2ab-4bef-8d40-dcb37e87c4d1 4908088df251ed4ae27ddcbfd7a86e96 { 'aliquot_tag': 'ALQ_1605e279', 'gdc_sample_type': 'Recurrent Tumor' } +C685110.miRNA-Seq.R.hg38 C685110 GBM miRNA-Seq recurrent_tumor 7316UP-1883-1104817 f03d7cbf-e849-42ad-8f5d-67e3822191ee_mirnaseq_gdc_realn.bam 349281951 BAM harmonized CPTAC3 81402dca-0775-4e8c-85fb-24f045f8d530 3b1ec58d4e2852c7f84554316f6ab472 { 'aliquot_tag': 'ALQ_1605e279', 'gdc_sample_type': 'Recurrent Tumor' } C685110.miRNA-Seq.T C685110 GBM miRNA-Seq tumor 7316UP-1640-1104801 210817_UNC31-K00269_0302_AHLCTHBBXY_AGTTCC_S44_L003_R1_001.unaln.bam 206155138 BAM unaligned CPTAC3 dc4fd1b7-bf4d-43e5-89f2-478dde46ec37 b159dd6b7790632e3ff66ebdaa945528 { 'aliquot_tag': 'ALQ_97ba8140', 'gdc_sample_type': 'Primary Tumor' } -C685110.RNA-Seq.R1_L001.T C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R1_001.fastq.gz 4410505069 FASTQ R1_L001 unaligned CPTAC3 519a2bd8-5dba-4d6a-9ca0-3cc6855d0045 84e0bc351d31f9b4993e48be4fa21ef9 { 'aliquot_tag': 'ALQ_97ba8140', 'gdc_sample_type': 'Primary Tumor' } -C685110.RNA-Seq.R1_L007.R C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 3583102105 FASTQ R1_L007 unaligned CPTAC3 0ff23a92-6ade-4e6b-9867-2c64eb28c3de 0617ae40b2cca440a40a1fe8dc272127 { 'aliquot_tag': 'ALQ_1605e279', 'gdc_sample_type': 'Recurrent Tumor' } -C685110.RNA-Seq.R2_L001.T C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R2_001.fastq.gz 4760327779 FASTQ R2_L001 unaligned CPTAC3 131ac7f3-1651-4192-83cb-6f9a97cbc981 bb48a6309cb400fb8d671dfdc2012903 { 'aliquot_tag': 'ALQ_97ba8140', 'gdc_sample_type': 'Primary Tumor' } -C685110.RNA-Seq.R2_L007.R C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R2_001.fastq.gz 3728372708 FASTQ R2_L007 unaligned CPTAC3 3652dfbb-4928-4636-9f9a-16069dc753ca c2b8a12c902c9d544c8f557f247faa15 { 'aliquot_tag': 'ALQ_1605e279', 'gdc_sample_type': 'Recurrent Tumor' } +C685110.miRNA-Seq.T.hg38 C685110 GBM miRNA-Seq tumor 7316UP-1640-1104801 b0dcdc07-8305-4ab3-806d-f52eef38497c_mirnaseq_gdc_realn.bam 230886665 BAM harmonized CPTAC3 1dec6b08-d950-4aef-88a4-f953d384c9db e51517a4e110820c0e53ff04a26f7068 { 'aliquot_tag': 'ALQ_97ba8140', 'gdc_sample_type': 'Primary Tumor' } +C685110.RNA-Seq.chimeric.R.hg38 C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 876e5e74-240b-4070-877c-d99ff7ea80cc.rna_seq.chimeric.gdc_realn.bam 45307028 BAM chimeric harmonized CPTAC3 6a7c419e-1639-4ed4-8475-39b042237fb2 6909c0002f72e7e660766c0b787ee2c1 { 'aliquot_tag': 'ALQ_1605e279', 'gdc_sample_type': 'Recurrent Tumor' } +C685110.RNA-Seq.chimeric.T.hg38 C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 e5d7982b-1d21-420c-a081-27f9ae98adb6.rna_seq.chimeric.gdc_realn.bam 116658331 BAM chimeric harmonized CPTAC3 8171d7d7-d344-4458-a039-2ced955f5f02 cd36e3bc7556ee4c24072bf861025ce1 { 'aliquot_tag': 'ALQ_97ba8140', 'gdc_sample_type': 'Primary Tumor' } +C685110.RNA-Seq.genomic.R.hg38 C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 876e5e74-240b-4070-877c-d99ff7ea80cc.rna_seq.genomic.gdc_realn.bam 9672838007 BAM genomic harmonized CPTAC3 14d4bd12-48b5-4981-8c3d-9119a9a216c7 38a4f91682a5ff9dbf1e4e1e73d2ba6d { 'aliquot_tag': 'ALQ_1605e279', 'gdc_sample_type': 'Recurrent Tumor' } +C685110.RNA-Seq.genomic.T.hg38 C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 e5d7982b-1d21-420c-a081-27f9ae98adb6.rna_seq.genomic.gdc_realn.bam 8861269527 BAM genomic harmonized CPTAC3 2de6ee3b-51f5-4670-8a32-c6e5242c61ad 530cabd580efe772e1c59a44771ca566 { 'aliquot_tag': 'ALQ_97ba8140', 'gdc_sample_type': 'Primary Tumor' } +C685110.RNA-Seq.R1_L001.T C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R1_001.fastq.gz 4410505069 FASTQ R1_L001 unaligned CPTAC3 519a2bd8-5dba-4d6a-9ca0-3cc6855d0045 84e0bc351d31f9b4993e48be4fa21ef9 { 'aliquot_tag': 'ALQ_97ba8140', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C685110.RNA-Seq.R1_L007.R C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R1_001.fastq.gz 3583102105 FASTQ R1_L007 unaligned CPTAC3 0ff23a92-6ade-4e6b-9867-2c64eb28c3de 0617ae40b2cca440a40a1fe8dc272127 { 'aliquot_tag': 'ALQ_1605e279', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L007' } +C685110.RNA-Seq.R2_L001.T C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 210713_UNC32-K00270_0291_AHLK5VBBXY_AATGCCTC-TCGATCCA_S1_L001_R2_001.fastq.gz 4760327779 FASTQ R2_L001 unaligned CPTAC3 131ac7f3-1651-4192-83cb-6f9a97cbc981 bb48a6309cb400fb8d671dfdc2012903 { 'aliquot_tag': 'ALQ_97ba8140', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C685110.RNA-Seq.R2_L007.R C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 210713_UNC32-K00270_0291_AHLK5VBBXY_AGTTCAGG-CCAACAGA_S25_L007_R2_001.fastq.gz 3728372708 FASTQ R2_L007 unaligned CPTAC3 3652dfbb-4928-4636-9f9a-16069dc753ca c2b8a12c902c9d544c8f557f247faa15 { 'aliquot_tag': 'ALQ_1605e279', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L007' } +C685110.RNA-Seq.transcriptome.R.hg38 C685110 GBM RNA-Seq recurrent_tumor 7316UP-1883-1104817 876e5e74-240b-4070-877c-d99ff7ea80cc.rna_seq.transcriptome.gdc_realn.bam 13118774964 BAM transcriptome harmonized CPTAC3 27472be8-b1e4-44e3-bbe4-9010d686d585 e1da09031fb04370c01ffc94a3cca09f { 'aliquot_tag': 'ALQ_1605e279', 'gdc_sample_type': 'Recurrent Tumor' } +C685110.RNA-Seq.transcriptome.T.hg38 C685110 GBM RNA-Seq tumor 7316UP-1640-1104801 e5d7982b-1d21-420c-a081-27f9ae98adb6.rna_seq.transcriptome.gdc_realn.bam 20035746462 BAM transcriptome harmonized CPTAC3 2922cc31-d43a-42e3-9eb2-79fa8376db87 b2a87983ec8ce320ed558c23cd8a0b08 { 'aliquot_tag': 'ALQ_97ba8140', 'gdc_sample_type': 'Primary Tumor' } C685110.WGS.N C685110 GBM WGS blood_normal 7316UP-1640-1105277 7316UP-1640-1105277.WholeGenome.RP-2158.bam 46238585989 BAM aligned CPTAC3 fbea3bb4-541a-4972-ac52-526e12b87ed2 77edcf03df4527c3a8be2a3f11e49ea2 { 'aliquot_tag': 'ALQ_84b35001', 'gdc_sample_type': 'Blood Derived Normal' } +C685110.WGS.N.hg38 C685110 GBM WGS blood_normal 7316UP-1640-1105277 6ff375e3-b12b-4613-b2fa-92050083e4d4_wgs_gdc_realn.bam 137528306793 BAM harmonized CPTAC3 e25543a2-1b16-473c-880f-e6958968eaa9 1370a7932626ad488f113f966541c60f { 'aliquot_tag': 'ALQ_84b35001', 'gdc_sample_type': 'Blood Derived Normal' } C685110.WGS.T C685110 GBM WGS tumor 7316UP-1640-1105266 7316UP-1640-1105266.WholeGenome.RP-2158.bam 52796552329 BAM aligned CPTAC3 b081720c-6818-4299-916b-e2895fa2bb0e 5b86bf9d2e253af28c91c58f920a8626 { 'aliquot_tag': 'ALQ_eaaf51d6', 'gdc_sample_type': 'Primary Tumor' } +C685110.WGS.T.hg38 C685110 GBM WGS tumor 7316UP-1640-1105266 1e2e1134-2810-4845-91cb-feed8c0cb7af_wgs_gdc_realn.bam 146654906111 BAM harmonized CPTAC3 fbd79a73-b732-40ef-a0f4-958216263a3c a7d12620ecb52452d39acba5eedf1187 { 'aliquot_tag': 'ALQ_eaaf51d6', 'gdc_sample_type': 'Primary Tumor' } C685110.WXS.N C685110 GBM WXS blood_normal 7316UP-1640-1105277 7316UP-1640-1105277.WholeExome.RP-1303.bam 26076619092 BAM aligned CPTAC3 b5898748-110f-4c82-b9d6-1fcb24a9253c 2a9122df46791d6874c664830397fee6 { 'aliquot_tag': 'ALQ_84b35001', 'gdc_sample_type': 'Blood Derived Normal' } +C685110.WXS.N.hg38 C685110 GBM WXS blood_normal 7316UP-1640-1105277 6ff375e3-b12b-4613-b2fa-92050083e4d4_wxs_gdc_realn.bam 35274824769 BAM harmonized CPTAC3 5d4f21f6-d0a3-479d-a3fe-b84b1c27cfa4 d8cde9b75dacbca7b897eff91009ccc7 { 'aliquot_tag': 'ALQ_84b35001', 'gdc_sample_type': 'Blood Derived Normal' } C685110.WXS.T C685110 GBM WXS tumor 7316UP-1640-1105266 7316UP-1640-1105266.WholeExome.RP-1303.bam 24916908755 BAM aligned CPTAC3 9d0a809c-159d-4108-bd85-d202c3174aa9 1d0e55a63658aba3ebbf261099d1cb60 { 'aliquot_tag': 'ALQ_eaaf51d6', 'gdc_sample_type': 'Primary Tumor' } +C685110.WXS.T.hg38 C685110 GBM WXS tumor 7316UP-1640-1105266 1e2e1134-2810-4845-91cb-feed8c0cb7af_wxs_gdc_realn.bam 34019804973 BAM harmonized CPTAC3 533ec6cf-ac77-4d87-ad54-c8f34025c447 25588b15abcd9fb17d63e76733c6934b { 'aliquot_tag': 'ALQ_eaaf51d6', 'gdc_sample_type': 'Primary Tumor' } C760878.DUP_8e047fa6.MethArray.Green.R C760878 GBM Methylation Array recurrent_tumor 7316UP-2726 205705520154_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 35679230-1353-4e92-865c-2923a832f0ee 195673c04662146069558851d1c79c3e { 'aliquot_tag': 'DUP_8e047fa6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C760878.DUP_8e047fa6.MethArray.Red.R C760878 GBM Methylation Array recurrent_tumor 7316UP-2726 205705520154_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 81c07275-a44f-4484-a191-7b6f69aa2856 2c9d85d67aa6fbfc85f71935defd8c65 { 'aliquot_tag': 'DUP_8e047fa6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C760878.DUP_8e047fa6.WGS.R C760878 GBM WGS recurrent_tumor 7316UP-2726 7316UP-2726.WholeGenome.RP-2158.bam 51148367936 BAM aligned CPTAC3 86ad293f-7896-44da-b5ee-6136091f3ec1 a1f97f8051cd3de27ac0568c1889ea40 { 'aliquot_tag': 'DUP_8e047fa6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C760878.DUP_8e047fa6.WGS.R.hg38 C760878 GBM WGS recurrent_tumor 7316UP-2726 9952742f-5995-4aa6-8b29-737ef9b7e3b3_wgs_gdc_realn.bam 153565762186 BAM harmonized CPTAC3 040387a5-52ee-4943-a357-5cfce917bdc4 0ae3f193c0f43b8c3b95ee2545eb7e45 { 'aliquot_tag': 'DUP_8e047fa6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C760878.DUP_8e047fa6.WXS.R C760878 GBM WXS recurrent_tumor 7316UP-2726 7316UP-2726.WholeExome.RP-1303.bam 34826010175 BAM aligned CPTAC3 09bdc2a5-d466-4c7c-a812-a04762110d28 71f476c6099292d96fb9c2fe959bda31 { 'aliquot_tag': 'DUP_8e047fa6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C760878.DUP_8e047fa6.WXS.R.hg38 C760878 GBM WXS recurrent_tumor 7316UP-2726 9952742f-5995-4aa6-8b29-737ef9b7e3b3_wxs_gdc_realn.bam 47319708005 BAM harmonized CPTAC3 803642be-4348-4ebb-93d9-8b74d13f6bf2 59ec82faec890a31abd94f7f234b00f4 { 'aliquot_tag': 'DUP_8e047fa6', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C760878.DUP_b1ddc47c.MethArray.Green.T C760878 GBM Methylation Array tumor 7316UP-1843 205705520083_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 4996fa9a-a666-4f7b-a843-9be2a298d8dd 82332fa3845df5188180e0ef3087552f { 'aliquot_tag': 'DUP_b1ddc47c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C760878.DUP_b1ddc47c.MethArray.Red.T C760878 GBM Methylation Array tumor 7316UP-1843 205705520083_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 997ff62d-c2d5-4ce6-8aa1-7ed60e89724b a1702b5f70235508c5e7d911854b7d78 { 'aliquot_tag': 'DUP_b1ddc47c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C760878.DUP_b1ddc47c.WGS.T C760878 GBM WGS tumor 7316UP-1843 7316UP-1843.WholeGenome.RP-2158.bam 52659142864 BAM aligned CPTAC3 3521f7d5-7f2f-49a4-a056-677cf68534cf 13eed2638a303910faba6a6124bedd92 { 'aliquot_tag': 'DUP_b1ddc47c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C760878.DUP_b1ddc47c.WGS.T.hg38 C760878 GBM WGS tumor 7316UP-1843 9efda7a7-d54a-492b-9158-88f2644e909f_wgs_gdc_realn.bam 156692335603 BAM harmonized CPTAC3 76cfa23a-9aa9-41dd-945e-7806a9faa235 c420e8da770f1d5bb26651cbbdd26c44 { 'aliquot_tag': 'DUP_b1ddc47c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C760878.DUP_b1ddc47c.WXS.T C760878 GBM WXS tumor 7316UP-1843 7316UP-1843.WholeExome.RP-1303.bam 27174083246 BAM aligned CPTAC3 ccb3f38a-9134-4fc4-8a72-71f766a29c9d 156582dd20a1d821292563bf63984d9f { 'aliquot_tag': 'DUP_b1ddc47c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C760878.DUP_b1ddc47c.WXS.T.hg38 C760878 GBM WXS tumor 7316UP-1843 9efda7a7-d54a-492b-9158-88f2644e909f_wxs_gdc_realn.bam 36863375757 BAM harmonized CPTAC3 dae070e2-2c6a-49ba-ae92-6f2319325e2a a6aaa3e042802eb411fef68ecd390913 { 'aliquot_tag': 'DUP_b1ddc47c', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C760878.miRNA-Seq.R C760878 GBM miRNA-Seq recurrent_tumor 7316UP-2726-1104803 210817_UNC31-K00269_0302_AHLCTHBBXY_CCGTCC_S46_L003_R1_001.unaln.bam 279335716 BAM unaligned CPTAC3 ba3e5fc9-e21d-4a7f-8dd8-ea9f4c476948 23fcadd519ecce30ed2a049b7bf24f89 { 'aliquot_tag': 'ALQ_b1a0e491', 'gdc_sample_type': 'Recurrent Tumor' } +C760878.miRNA-Seq.R.hg38 C760878 GBM miRNA-Seq recurrent_tumor 7316UP-2726-1104803 e49855a4-003c-4264-9715-435c165ac24a_mirnaseq_gdc_realn.bam 322496254 BAM harmonized CPTAC3 89d11119-3e93-4197-8d57-6e3547e7bb77 ad82887f5280c62bfcc88391f35911fc { 'aliquot_tag': 'ALQ_b1a0e491', 'gdc_sample_type': 'Recurrent Tumor' } C760878.miRNA-Seq.T C760878 GBM miRNA-Seq tumor 7316UP-1843-1104791 210817_UNC31-K00269_0302_AHLCTHBBXY_TGACCA_S41_L002_R1_001.unaln.bam 169727575 BAM unaligned CPTAC3 90bc24a4-cc91-42cf-9b26-4efacc9fac14 38b53d8a54763bd5af39b8fc092f4483 { 'aliquot_tag': 'ALQ_26df6af7', 'gdc_sample_type': 'Primary Tumor' } -C760878.RNA-Seq.R1_L002.T C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3428466031 FASTQ R1_L002 unaligned CPTAC3 86b299c6-96ce-4d99-b32b-76a4bcd9ee4c f6b0d9add39f2e7b0c9e526595f213ee { 'aliquot_tag': 'ALQ_26df6af7', 'gdc_sample_type': 'Primary Tumor' } -C760878.RNA-Seq.R1_L006.R C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3626934770 FASTQ R1_L006 unaligned CPTAC3 c47b1200-7652-4875-9681-8bdcd0de7ac0 b4060c099fd3e7d50b945e2d3892b080 { 'aliquot_tag': 'ALQ_b1a0e491', 'gdc_sample_type': 'Recurrent Tumor' } -C760878.RNA-Seq.R2_L002.T C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 3707998190 FASTQ R2_L002 unaligned CPTAC3 51ca63ce-fa0b-4327-b258-dc34abd61afc c48910bc1037cfc3a36fb2eb3bb1dd7e { 'aliquot_tag': 'ALQ_26df6af7', 'gdc_sample_type': 'Primary Tumor' } -C760878.RNA-Seq.R2_L006.R C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R2_001.fastq.gz 3977519333 FASTQ R2_L006 unaligned CPTAC3 b8645040-f99b-4031-88bb-231e179d10f0 98e22a784083a347faf55086f7ec6455 { 'aliquot_tag': 'ALQ_b1a0e491', 'gdc_sample_type': 'Recurrent Tumor' } +C760878.miRNA-Seq.T.hg38 C760878 GBM miRNA-Seq tumor 7316UP-1843-1104791 b863722f-46c4-4aa5-a36f-c052b7c9822a_mirnaseq_gdc_realn.bam 193027906 BAM harmonized CPTAC3 1fb72deb-c4b8-4713-abdf-e8c2512da083 9e37bb0868d39278a328210c250b22a5 { 'aliquot_tag': 'ALQ_26df6af7', 'gdc_sample_type': 'Primary Tumor' } +C760878.RNA-Seq.chimeric.R.hg38 C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 ab34b939-54f1-4c1b-b657-2fc0d6815323.rna_seq.chimeric.gdc_realn.bam 111407017 BAM chimeric harmonized CPTAC3 8b6d8957-5d0c-4c14-a23e-5f525ec51563 0f78dba424a5a2c931402f128e04b265 { 'aliquot_tag': 'ALQ_b1a0e491', 'gdc_sample_type': 'Recurrent Tumor' } +C760878.RNA-Seq.chimeric.T.hg38 C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 2863e605-60a9-4210-a3ac-7bebee7f1017.rna_seq.chimeric.gdc_realn.bam 157411492 BAM chimeric harmonized CPTAC3 a643cc1e-9e00-4060-a13c-98d361d982da 84c2e42eb7ec4ad487c29ed219f098ce { 'aliquot_tag': 'ALQ_26df6af7', 'gdc_sample_type': 'Primary Tumor' } +C760878.RNA-Seq.genomic.R.hg38 C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 ab34b939-54f1-4c1b-b657-2fc0d6815323.rna_seq.genomic.gdc_realn.bam 7958016593 BAM genomic harmonized CPTAC3 28620a9c-d98c-49c7-86e3-c1219b7851ba 2d1d3e8168bd0875ad959a815521a684 { 'aliquot_tag': 'ALQ_b1a0e491', 'gdc_sample_type': 'Recurrent Tumor' } +C760878.RNA-Seq.genomic.T.hg38 C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 2863e605-60a9-4210-a3ac-7bebee7f1017.rna_seq.genomic.gdc_realn.bam 7122744863 BAM genomic harmonized CPTAC3 7a62d98d-5e1a-4bc5-81df-3e4ab96ca6e6 4449cc45acf2469538173fe8250ed877 { 'aliquot_tag': 'ALQ_26df6af7', 'gdc_sample_type': 'Primary Tumor' } +C760878.RNA-Seq.R1_L002.T C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R1_001.fastq.gz 3428466031 FASTQ R1_L002 unaligned CPTAC3 86b299c6-96ce-4d99-b32b-76a4bcd9ee4c f6b0d9add39f2e7b0c9e526595f213ee { 'aliquot_tag': 'ALQ_26df6af7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C760878.RNA-Seq.R1_L006.R C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R1_001.fastq.gz 3626934770 FASTQ R1_L006 unaligned CPTAC3 c47b1200-7652-4875-9681-8bdcd0de7ac0 b4060c099fd3e7d50b945e2d3892b080 { 'aliquot_tag': 'ALQ_b1a0e491', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L006' } +C760878.RNA-Seq.R2_L002.T C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 210713_UNC32-K00270_0291_AHLK5VBBXY_CCGTGAAG-CAGTGGAT_S6_L002_R2_001.fastq.gz 3707998190 FASTQ R2_L002 unaligned CPTAC3 51ca63ce-fa0b-4327-b258-dc34abd61afc c48910bc1037cfc3a36fb2eb3bb1dd7e { 'aliquot_tag': 'ALQ_26df6af7', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C760878.RNA-Seq.R2_L006.R C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 210811_UNC31-K00269_0301_AHLLC5BBXY_CGGAACTG-CACTACGA_S22_L006_R2_001.fastq.gz 3977519333 FASTQ R2_L006 unaligned CPTAC3 b8645040-f99b-4031-88bb-231e179d10f0 98e22a784083a347faf55086f7ec6455 { 'aliquot_tag': 'ALQ_b1a0e491', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L006' } +C760878.RNA-Seq.transcriptome.R.hg38 C760878 GBM RNA-Seq recurrent_tumor 7316UP-2726-1104803 ab34b939-54f1-4c1b-b657-2fc0d6815323.rna_seq.transcriptome.gdc_realn.bam 11373368602 BAM transcriptome harmonized CPTAC3 10efdc1b-8d45-42d1-95c0-01a7fcbf57aa 3b0b8854f28f9377ae002afb129be1ef { 'aliquot_tag': 'ALQ_b1a0e491', 'gdc_sample_type': 'Recurrent Tumor' } +C760878.RNA-Seq.transcriptome.T.hg38 C760878 GBM RNA-Seq tumor 7316UP-1843-1104791 2863e605-60a9-4210-a3ac-7bebee7f1017.rna_seq.transcriptome.gdc_realn.bam 14763470994 BAM transcriptome harmonized CPTAC3 c1fdcf21-75e0-412b-8f47-f4f9e01d4aa2 72f89b1128c1fba16068848d84597223 { 'aliquot_tag': 'ALQ_26df6af7', 'gdc_sample_type': 'Primary Tumor' } C760878.WGS.R C760878 GBM WGS recurrent_tumor 7316UP-2726-1105268 7316UP-2726-1105268.WholeGenome.RP-2158.bam 43181516048 BAM aligned CPTAC3 e87422a4-53c4-4a78-b552-e769f2560d10 952a50dc22c514c8d1324c81ad2ff0e3 { 'aliquot_tag': 'ALQ_c503782c', 'gdc_sample_type': 'Recurrent Tumor' } +C760878.WGS.R.hg38 C760878 GBM WGS recurrent_tumor 7316UP-2726-1105268 109d765d-2923-47ce-b9bc-cce594d1512c_wgs_gdc_realn.bam 126333949057 BAM harmonized CPTAC3 a01eb922-248a-40e9-9fe1-731c18c8cd9a 98abe63ee266261f6e627dd12adeafe2 { 'aliquot_tag': 'ALQ_c503782c', 'gdc_sample_type': 'Recurrent Tumor' } C760878.WGS.T C760878 GBM WGS tumor 7316UP-1843-1105254 7316UP-1843-1105254.WholeGenome.RP-2158.bam 64521345577 BAM aligned CPTAC3 1450f6a2-0de0-4974-81fd-c7d489cee875 6291e068006afcd5a6b4637dc958717a { 'aliquot_tag': 'ALQ_447774fa', 'gdc_sample_type': 'Primary Tumor' } +C760878.WGS.T.hg38 C760878 GBM WGS tumor 7316UP-1843-1105254 ad3ce926-8ffc-46c4-87c9-64fba596ac12_wgs_gdc_realn.bam 181254456613 BAM harmonized CPTAC3 f90f44ce-8e3a-4a48-9595-0f118b7d2136 d70103eba72415ed913d2864a7dd026b { 'aliquot_tag': 'ALQ_447774fa', 'gdc_sample_type': 'Primary Tumor' } C760878.WXS.N C760878 GBM WXS blood_normal 7316UP-1843-1105278 7316UP-1843-1105278.WholeExome.RP-1303.bam 25612276094 BAM aligned CPTAC3 4254f062-9dc7-489e-816a-23711fe63892 3cb3084c36f9c4044fcbcd4758015b57 { 'aliquot_tag': 'ALQ_7ff75a53', 'gdc_sample_type': 'Blood Derived Normal' } +C760878.WXS.N.hg38 C760878 GBM WXS blood_normal 7316UP-1843-1105278 0d3f7051-f710-4f75-801e-a163b2a7c958_wxs_gdc_realn.bam 34942652944 BAM harmonized CPTAC3 26a2fe79-198a-45a6-9329-ac32ed951da4 b63f9e35509de826d11dae0fd4b0f5c6 { 'aliquot_tag': 'ALQ_7ff75a53', 'gdc_sample_type': 'Blood Derived Normal' } C760878.WXS.R C760878 GBM WXS recurrent_tumor 7316UP-2726-1105268 7316UP-2726-1105268.WholeExome.RP-1303.bam 36649596530 BAM aligned CPTAC3 4d2157f1-28d9-4e05-8f9d-a4424b09c858 8f124c78ab2e85e2f8312c3d32f3762b { 'aliquot_tag': 'ALQ_c503782c', 'gdc_sample_type': 'Recurrent Tumor' } +C760878.WXS.R.hg38 C760878 GBM WXS recurrent_tumor 7316UP-2726-1105268 109d765d-2923-47ce-b9bc-cce594d1512c_wxs_gdc_realn.bam 50407336546 BAM harmonized CPTAC3 6c4e1c9b-a2e2-4502-8e26-82b89fad92ae 61d385dfed7a1efec00331d0403e1dfd { 'aliquot_tag': 'ALQ_c503782c', 'gdc_sample_type': 'Recurrent Tumor' } C760878.WXS.T C760878 GBM WXS tumor 7316UP-1843-1105254 7316UP-1843-1105254.WholeExome.RP-1303.bam 24231661236 BAM aligned CPTAC3 ae2999a1-41b5-4226-b4c7-47045e937235 5a40c541dfe91688a386b9c6050dd688 { 'aliquot_tag': 'ALQ_447774fa', 'gdc_sample_type': 'Primary Tumor' } +C760878.WXS.T.hg38 C760878 GBM WXS tumor 7316UP-1843-1105254 ad3ce926-8ffc-46c4-87c9-64fba596ac12_wxs_gdc_realn.bam 34062192234 BAM harmonized CPTAC3 5495a6ee-951b-4613-b9d3-3344fe76a916 9850ea6c26bdb95ab720a8ed7d6898e2 { 'aliquot_tag': 'ALQ_447774fa', 'gdc_sample_type': 'Primary Tumor' } C761370.DUP_260f1df4.MethArray.Green.T C761370 GBM Methylation Array tumor 7316UP-1848 205854150177_R07C01_Grn.idat 13677893 IDAT Green NA CPTAC3 79ce9446-5aad-4f6e-800c-870d5c7c856d 6e9b8ee86d408604c6a278d111065a6c { 'aliquot_tag': 'DUP_260f1df4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C761370.DUP_260f1df4.MethArray.Red.T C761370 GBM Methylation Array tumor 7316UP-1848 205854150177_R07C01_Red.idat 13677893 IDAT Red NA CPTAC3 b80ed94e-d5cb-43c0-9a9a-f697c73912d8 dcba89c93fbc81b5cc8ee006f88a7880 { 'aliquot_tag': 'DUP_260f1df4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C761370.DUP_260f1df4.WGS.T C761370 GBM WGS tumor 7316UP-1848 7316UP-1848.WholeGenome.RP-2158.bam 51644080684 BAM aligned CPTAC3 3ff9d2fc-c389-4747-8648-f030c20b2c18 412c1506cb1068fc73b87256ba3d05e4 { 'aliquot_tag': 'DUP_260f1df4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C761370.DUP_260f1df4.WGS.T.hg38 C761370 GBM WGS tumor 7316UP-1848 59ba09c2-abf4-46dd-b566-c703d8da80e5_wgs_gdc_realn.bam 153860990638 BAM harmonized CPTAC3 f5979a9a-e1e5-4b1e-8a6d-971a8619cdb2 ce9ca6d3af470190eb668840c3e77d89 { 'aliquot_tag': 'DUP_260f1df4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C761370.DUP_260f1df4.WXS.T C761370 GBM WXS tumor 7316UP-1848 7316UP-1848.WholeExome.RP-1303.bam 31981438733 BAM aligned CPTAC3 6dce99c6-b5a5-4ee0-8ee6-1e02ebf260a2 6c5be4d787070125a99a4f6e292b78bd { 'aliquot_tag': 'DUP_260f1df4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C761370.DUP_260f1df4.WXS.T.hg38 C761370 GBM WXS tumor 7316UP-1848 59ba09c2-abf4-46dd-b566-c703d8da80e5_wxs_gdc_realn.bam 44821987147 BAM harmonized CPTAC3 fd66e1f9-ce3b-4a76-9e48-23bf78568f41 a94ee7e68570950dc20cb0048c899e3e { 'aliquot_tag': 'DUP_260f1df4', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C761370.DUP_4b43218c.MethArray.Green.R C761370 GBM Methylation Array recurrent_tumor 7316UP-2310 205854150169_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 ff58beb8-e646-41a6-a815-0b18fb8a2519 5359f544f75f1d27c9ac8d6216c5abcd { 'aliquot_tag': 'DUP_4b43218c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C761370.DUP_4b43218c.MethArray.Red.R C761370 GBM Methylation Array recurrent_tumor 7316UP-2310 205854150169_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 6a560bdc-9c45-48d1-aeba-0eeb3791ebb9 45c50335b876517e3110b2bf981e5554 { 'aliquot_tag': 'DUP_4b43218c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C761370.DUP_4b43218c.WGS.R C761370 GBM WGS recurrent_tumor 7316UP-2310 7316UP-2310.WholeGenome.RP-2158.bam 47338708829 BAM aligned CPTAC3 953902f7-b5d0-4995-b32c-744a5d69fd57 f1596834fd222bd076253d02243d81bb { 'aliquot_tag': 'DUP_4b43218c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } +C761370.DUP_4b43218c.WGS.R.hg38 C761370 GBM WGS recurrent_tumor 7316UP-2310 5ac7956a-d521-4b91-9211-8b98765fa4b0_wgs_gdc_realn.bam 139056330460 BAM harmonized CPTAC3 35de409f-b939-48b7-a446-1f71686bd915 b166f1579ba45d00ff5fc46aef8c77ce { 'aliquot_tag': 'DUP_4b43218c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C761370.DUP_4b43218c.WXS.R C761370 GBM WXS recurrent_tumor 7316UP-2310 7316UP-2310.WholeExome.RP-1303.bam 47745759188 BAM aligned CPTAC3 7f3a3a5d-557b-4af6-aed2-7e7b2c9ddfed 98949ae96661939248fd4c79723bf6d6 { 'aliquot_tag': 'DUP_4b43218c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } +C761370.DUP_4b43218c.WXS.R.hg38 C761370 GBM WXS recurrent_tumor 7316UP-2310 5ac7956a-d521-4b91-9211-8b98765fa4b0_wxs_gdc_realn.bam 65618004180 BAM harmonized CPTAC3 59bd5a44-f128-4533-b8ee-41b318cebae9 7cc2edd115a612685126fede965b217b { 'aliquot_tag': 'DUP_4b43218c', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C761370.DUP_d11a2397.WGS.R C761370 GBM WGS recurrent_tumor 7316UP-2310-1105240 7316UP-2310-1105240.WholeGenome.RP-2158.bam 50186159916 BAM aligned CPTAC3 541eba21-ad2a-4c21-ba54-688ccbd3ae91 a2248078c0926f5e5c00cb4e544f3f74 { 'aliquot_tag': 'DUP_d11a2397', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C761370.DUP_d11a2397.WGS.R.hg38 C761370 GBM WGS recurrent_tumor 7316UP-2310-1105240 f90fe2dd-2e89-4710-b776-511427fa2a84_wgs_gdc_realn.bam 152510216231 BAM harmonized CPTAC3 7b3c75af-189f-4135-a095-4c8d7b85b34f bf4223e5267bb399b3a7b400cf3a803a { 'aliquot_tag': 'DUP_d11a2397', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C761370.DUP_d11a2397.WXS.R C761370 GBM WXS recurrent_tumor 7316UP-2310-1105240 7316UP-2310-1105240.WholeExome.RP-1303.bam 24522804264 BAM aligned CPTAC3 2f90a34c-c645-448d-a51b-b45d398c728a 3450f62644b64e0faf890f9c6101da2f { 'aliquot_tag': 'DUP_d11a2397', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C761370.DUP_d11a2397.WXS.R.hg38 C761370 GBM WXS recurrent_tumor 7316UP-2310-1105240 f90fe2dd-2e89-4710-b776-511427fa2a84_wxs_gdc_realn.bam 33109931762 BAM harmonized CPTAC3 6b5e7c63-dd7e-474b-bb0b-1ac39be42e15 7256e2b172dc9abb2e6bf464a3cf81d8 { 'aliquot_tag': 'DUP_d11a2397', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C761370.miRNA-Seq.R C761370 GBM miRNA-Seq recurrent_tumor 7316UP-2310-1104757 210817_UNC31-K00269_0302_AHLCTHBBXY_GTCCGC_S18_L001_R1_001.unaln.bam 277481764 BAM unaligned CPTAC3 d0acb96c-704f-4db7-b5df-116d52c68891 0bf880c98874ff6c5f8264ccbd6ec313 { 'aliquot_tag': 'ALQ_e81222fb', 'gdc_sample_type': 'Recurrent Tumor' } +C761370.miRNA-Seq.R.hg38 C761370 GBM miRNA-Seq recurrent_tumor 7316UP-2310-1104757 b133437a-b37d-429b-97c6-0c4af7d9b477_mirnaseq_gdc_realn.bam 317162321 BAM harmonized CPTAC3 e92f2767-6478-436b-99db-188911216cfc 21ea679eacd2b09ce52d90ef8d20447d { 'aliquot_tag': 'ALQ_e81222fb', 'gdc_sample_type': 'Recurrent Tumor' } C761370.miRNA-Seq.T C761370 GBM miRNA-Seq tumor 7316UP-1848-1104789 210817_UNC31-K00269_0302_AHLCTHBBXY_CGATGT_S27_L002_R1_001.unaln.bam 90036960 BAM unaligned CPTAC3 45a78742-a2e6-4c38-bb44-be65912f364c d63f00e1f669d2a6b3bb636b52ca1c44 { 'aliquot_tag': 'ALQ_b34a4d59', 'gdc_sample_type': 'Primary Tumor' } -C761370.RNA-Seq.R1_L002.T C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R1_001.fastq.gz 3676602157 FASTQ R1_L002 unaligned CPTAC3 dca91fcb-3f8f-44de-965d-65e921a02fd5 6e0e66b1e873676662e18e10ca06e71e { 'aliquot_tag': 'ALQ_b34a4d59', 'gdc_sample_type': 'Primary Tumor' } -C761370.RNA-Seq.R1_L004.R C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R1_001.fastq.gz 3749935230 FASTQ R1_L004 unaligned CPTAC3 5888865b-8b1c-409f-849d-a969b1c7d9f1 ab0f425080e0a1aba0f09caabed29e1c { 'aliquot_tag': 'ALQ_e81222fb', 'gdc_sample_type': 'Recurrent Tumor' } -C761370.RNA-Seq.R2_L002.T C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R2_001.fastq.gz 4065964829 FASTQ R2_L002 unaligned CPTAC3 f0d9622c-b439-4941-94bb-29baf4448bed 54876ba181e25a5bd27b37a8b70b60b5 { 'aliquot_tag': 'ALQ_b34a4d59', 'gdc_sample_type': 'Primary Tumor' } -C761370.RNA-Seq.R2_L004.R C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R2_001.fastq.gz 4064864677 FASTQ R2_L004 unaligned CPTAC3 31f61c3a-670a-4635-b769-0a5f9dd7d8f2 f2c7ffd07e321d8cf6672c240e01938e { 'aliquot_tag': 'ALQ_e81222fb', 'gdc_sample_type': 'Recurrent Tumor' } +C761370.miRNA-Seq.T.hg38 C761370 GBM miRNA-Seq tumor 7316UP-1848-1104789 fd0a2cb3-a195-4905-b5b5-ec1be9a356a7_mirnaseq_gdc_realn.bam 106309257 BAM harmonized CPTAC3 69589c0f-8265-4baf-b8ac-22282d21cda2 9ba3f193adf8025f7a072028faaeef82 { 'aliquot_tag': 'ALQ_b34a4d59', 'gdc_sample_type': 'Primary Tumor' } +C761370.RNA-Seq.chimeric.R.hg38 C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 a7838bd4-3d34-4433-8e2b-e0c1407f55bc.rna_seq.chimeric.gdc_realn.bam 79588049 BAM chimeric harmonized CPTAC3 af913e01-10a5-4b7f-943a-b16ff81cbd2d 5ddc882ef783108d47cb6cc26366b34e { 'aliquot_tag': 'ALQ_e81222fb', 'gdc_sample_type': 'Recurrent Tumor' } +C761370.RNA-Seq.chimeric.T.hg38 C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 7e43cd55-3d6f-4fe8-bf9d-ab2dffc0d97d.rna_seq.chimeric.gdc_realn.bam 46178356 BAM chimeric harmonized CPTAC3 a2f556c0-75e5-47d1-b992-3e3dcbe4ce60 f832495810a9ffa921cd908c3ab6e9de { 'aliquot_tag': 'ALQ_b34a4d59', 'gdc_sample_type': 'Primary Tumor' } +C761370.RNA-Seq.genomic.R.hg38 C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 a7838bd4-3d34-4433-8e2b-e0c1407f55bc.rna_seq.genomic.gdc_realn.bam 9445323463 BAM genomic harmonized CPTAC3 6dcdcbe6-7208-4d07-b5c1-ef5fa8dda187 54a854be1c871fc2a2d2b8db3a0c9c6c { 'aliquot_tag': 'ALQ_e81222fb', 'gdc_sample_type': 'Recurrent Tumor' } +C761370.RNA-Seq.genomic.T.hg38 C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 7e43cd55-3d6f-4fe8-bf9d-ab2dffc0d97d.rna_seq.genomic.gdc_realn.bam 9319554993 BAM genomic harmonized CPTAC3 151c4db5-7e2f-449f-b91d-1086a6ace6a5 270e958a0a4fff398b2c2c24180aaf6a { 'aliquot_tag': 'ALQ_b34a4d59', 'gdc_sample_type': 'Primary Tumor' } +C761370.RNA-Seq.R1_L002.T C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R1_001.fastq.gz 3676602157 FASTQ R1_L002 unaligned CPTAC3 dca91fcb-3f8f-44de-965d-65e921a02fd5 6e0e66b1e873676662e18e10ca06e71e { 'aliquot_tag': 'ALQ_b34a4d59', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L002' } +C761370.RNA-Seq.R1_L004.R C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R1_001.fastq.gz 3749935230 FASTQ R1_L004 unaligned CPTAC3 5888865b-8b1c-409f-849d-a969b1c7d9f1 ab0f425080e0a1aba0f09caabed29e1c { 'aliquot_tag': 'ALQ_e81222fb', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L004' } +C761370.RNA-Seq.R2_L002.T C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 210811_UNC31-K00269_0301_AHLLC5BBXY_ACCTTGGC-GGCCTCAT_S5_L002_R2_001.fastq.gz 4065964829 FASTQ R2_L002 unaligned CPTAC3 f0d9622c-b439-4941-94bb-29baf4448bed 54876ba181e25a5bd27b37a8b70b60b5 { 'aliquot_tag': 'ALQ_b34a4d59', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L002' } +C761370.RNA-Seq.R2_L004.R C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 210811_UNC31-K00269_0301_AHLLC5BBXY_CAACAATG-CTTCACGG_S14_L004_R2_001.fastq.gz 4064864677 FASTQ R2_L004 unaligned CPTAC3 31f61c3a-670a-4635-b769-0a5f9dd7d8f2 f2c7ffd07e321d8cf6672c240e01938e { 'aliquot_tag': 'ALQ_e81222fb', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L004' } +C761370.RNA-Seq.transcriptome.R.hg38 C761370 GBM RNA-Seq recurrent_tumor 7316UP-2310-1104757 a7838bd4-3d34-4433-8e2b-e0c1407f55bc.rna_seq.transcriptome.gdc_realn.bam 13559423868 BAM transcriptome harmonized CPTAC3 a39c3e40-b755-4233-9e4e-bb9b3728e6c6 8ec20e16a45144fd6a277ee1c6a5878a { 'aliquot_tag': 'ALQ_e81222fb', 'gdc_sample_type': 'Recurrent Tumor' } +C761370.RNA-Seq.transcriptome.T.hg38 C761370 GBM RNA-Seq tumor 7316UP-1848-1104789 7e43cd55-3d6f-4fe8-bf9d-ab2dffc0d97d.rna_seq.transcriptome.gdc_realn.bam 12614732431 BAM transcriptome harmonized CPTAC3 e8abab16-c4a5-4d7a-9c03-4b05fa76ddac f81880dc354e7a4253504eaa0dfe64c8 { 'aliquot_tag': 'ALQ_b34a4d59', 'gdc_sample_type': 'Primary Tumor' } C761370.WGS.N C761370 GBM WGS blood_normal 7316UP-1848-1105210 7316UP-1848-1105210.WholeGenome.RP-2158.bam 59941947727 BAM aligned CPTAC3 7d7f64b0-e6ca-4440-b1cb-408cc666bf7f c104956c161dc565fd1a656736d3b956 { 'aliquot_tag': 'ALQ_a523eb3a', 'gdc_sample_type': 'Blood Derived Normal' } +C761370.WGS.N.hg38 C761370 GBM WGS blood_normal 7316UP-1848-1105210 bb429402-6251-49ac-a5e1-ec64c0707765_wgs_gdc_realn.bam 180943302646 BAM harmonized CPTAC3 8d798315-d251-4b30-9ae8-46eef4166aaf 1e703bbbabe17a4029592c1015dd76a4 { 'aliquot_tag': 'ALQ_a523eb3a', 'gdc_sample_type': 'Blood Derived Normal' } C761370.WGS.T C761370 GBM WGS tumor 7316UP-1848-1105252 7316UP-1848-1105252.WholeGenome.RP-2158.bam 52242174534 BAM aligned CPTAC3 b7a46c7c-1369-4b72-b781-d5b05e0c5d67 a1d299f96de11b27c06ca49d4ec7d30b { 'aliquot_tag': 'ALQ_2f414f12', 'gdc_sample_type': 'Primary Tumor' } +C761370.WGS.T.hg38 C761370 GBM WGS tumor 7316UP-1848-1105252 94dc4f39-5f41-450e-bc88-b5efb574ab4b_wgs_gdc_realn.bam 155112892361 BAM harmonized CPTAC3 f6231081-86d3-4b91-9b78-69de532a74ef 5463218bb3d0c95d2e7ff92e4ce38405 { 'aliquot_tag': 'ALQ_2f414f12', 'gdc_sample_type': 'Primary Tumor' } C761370.WXS.N C761370 GBM WXS blood_normal 7316UP-1848-1105210 7316UP-1848-1105210.WholeExome.RP-1303.bam 25632609658 BAM aligned CPTAC3 8c32252a-765b-4a13-9be9-59adf0e39899 e88ecda84eb4c45dd039ce33c101a0ae { 'aliquot_tag': 'ALQ_a523eb3a', 'gdc_sample_type': 'Blood Derived Normal' } +C761370.WXS.N.hg38 C761370 GBM WXS blood_normal 7316UP-1848-1105210 bb429402-6251-49ac-a5e1-ec64c0707765_wxs_gdc_realn.bam 35051751247 BAM harmonized CPTAC3 a3f91b31-1981-4536-bea9-8789c28a0305 5bf375786759bbd98bb80bce2fe7d6b9 { 'aliquot_tag': 'ALQ_a523eb3a', 'gdc_sample_type': 'Blood Derived Normal' } C761370.WXS.R C761370 GBM WXS recurrent_tumor 7316UP-2310-1105220 7316UP-2310-1105220.WholeExome.RP-1303.bam 22328978006 BAM aligned CPTAC3 f382759e-25f0-4a31-8f29-81ad8af13155 da7740d4ac4f7d4cd6f9188c4473522a { 'aliquot_tag': 'ALQ_87408411', 'gdc_sample_type': 'Recurrent Tumor' } +C761370.WXS.R.hg38 C761370 GBM WXS recurrent_tumor 7316UP-2310-1105220 b14b1e47-08b6-42b7-bd19-383cbdd4d943_wxs_gdc_realn.bam 30196177408 BAM harmonized CPTAC3 37c7127f-01a5-43e3-8c85-dd62630aaf80 ec73e1342597494a8a0fed23adb516a3 { 'aliquot_tag': 'ALQ_87408411', 'gdc_sample_type': 'Recurrent Tumor' } C761370.WXS.T C761370 GBM WXS tumor 7316UP-1848-1105252 7316UP-1848-1105252.WholeExome.RP-1303.bam 25751689208 BAM aligned CPTAC3 910901e4-d63f-41b2-b866-a602bc9a17d5 fa4331a6ad767ad0960dd52536ca5c71 { 'aliquot_tag': 'ALQ_2f414f12', 'gdc_sample_type': 'Primary Tumor' } +C761370.WXS.T.hg38 C761370 GBM WXS tumor 7316UP-1848-1105252 94dc4f39-5f41-450e-bc88-b5efb574ab4b_wxs_gdc_realn.bam 34824648092 BAM harmonized CPTAC3 8541768d-a439-4abf-987e-d08039a4ec1d fc07bdda5aeda5dd9c8d189601c84f86 { 'aliquot_tag': 'ALQ_2f414f12', 'gdc_sample_type': 'Primary Tumor' } C827913.DUP_97c68cdd.miRNA-Seq.R C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2527-1104816 210817_UNC31-K00269_0302_AHLCTHBBXY_CAACTA_S4_L003_R1_001.unaln.bam 177299449 BAM unaligned CPTAC3 4809d41d-5cde-4587-b4c2-9cb160f50336 c88e1d18a82236a93e8d230203365288 { 'aliquot_tag': 'DUP_97c68cdd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } -C827913.DUP_97c68cdd.RNA-Seq.R1_L002.R C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R1_001.fastq.gz 4131847766 FASTQ R1_L002 unaligned CPTAC3 7d9d1934-c881-4f7f-868e-7ff2720591ce ce1a6ef739ee98aa460df864d4b29cc3 { 'aliquot_tag': 'DUP_97c68cdd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } -C827913.DUP_97c68cdd.RNA-Seq.R2_L002.R C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R2_001.fastq.gz 4505545231 FASTQ R2_L002 unaligned CPTAC3 81cfe120-ec7e-48d7-8468-c407c8fef01e 7dcd43d256201d30395355847bb0affe { 'aliquot_tag': 'DUP_97c68cdd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C827913.DUP_97c68cdd.miRNA-Seq.R.hg38 C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2527-1104816 a0414d6e-dfae-41ef-af95-8ada454e42bc_mirnaseq_gdc_realn.bam 201335189 BAM harmonized CPTAC3 39926bff-5c62-490b-9a58-cae66e2f2fce 2ed59e9f3af50280cf7c07fa586c9439 { 'aliquot_tag': 'DUP_97c68cdd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C827913.DUP_97c68cdd.RNA-Seq.chimeric.R.hg38 C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 1245b825-e644-4e49-ab63-12d51d491fbf.rna_seq.chimeric.gdc_realn.bam 80665175 BAM chimeric harmonized CPTAC3 3bcb2523-bd25-4dee-bf24-9eb1d57a6626 ca028e3e9bf431e279ecf3a35706be5f { 'aliquot_tag': 'DUP_97c68cdd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C827913.DUP_97c68cdd.RNA-Seq.genomic.R.hg38 C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 1245b825-e644-4e49-ab63-12d51d491fbf.rna_seq.genomic.gdc_realn.bam 10532417541 BAM genomic harmonized CPTAC3 bd9ede12-b516-4d3a-abec-5c7781905508 a0bf21c1af1f611171485026d194c8cb { 'aliquot_tag': 'DUP_97c68cdd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } +C827913.DUP_97c68cdd.RNA-Seq.R1_L002.R C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R1_001.fastq.gz 4131847766 FASTQ R1_L002 unaligned CPTAC3 7d9d1934-c881-4f7f-868e-7ff2720591ce ce1a6ef739ee98aa460df864d4b29cc3 { 'aliquot_tag': 'DUP_97c68cdd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot', 'read': 'R1', 'lane': 'L002' } +C827913.DUP_97c68cdd.RNA-Seq.R2_L002.R C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 210811_UNC31-K00269_0301_AHLLC5BBXY_GTTCCAAT-AATTCTGC_S8_L002_R2_001.fastq.gz 4505545231 FASTQ R2_L002 unaligned CPTAC3 81cfe120-ec7e-48d7-8468-c407c8fef01e 7dcd43d256201d30395355847bb0affe { 'aliquot_tag': 'DUP_97c68cdd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot', 'read': 'R2', 'lane': 'L002' } +C827913.DUP_97c68cdd.RNA-Seq.transcriptome.R.hg38 C827913 GBM RNA-Seq recurrent_tumor 7316UP-2527-1104816 1245b825-e644-4e49-ab63-12d51d491fbf.rna_seq.transcriptome.gdc_realn.bam 13825377767 BAM transcriptome harmonized CPTAC3 a343ed39-7d5d-43f7-a056-b4308ef98195 fd3f146a1cd82080689ce362a44ccc29 { 'aliquot_tag': 'DUP_97c68cdd', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor RNA Aliquot' } C827913.DUP_cd3f587f.WGS.R C827913 GBM WGS recurrent_tumor 7316UP-2333-1105221 7316UP-2333-1105221.WholeGenome.RP-2158.bam 50801966508 BAM aligned CPTAC3 49589c76-14e2-4739-a8ae-697ffa6e766d d76147ab25723eacbf809e74fe7626ce { 'aliquot_tag': 'DUP_cd3f587f', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C827913.DUP_cd3f587f.WGS.R.hg38 C827913 GBM WGS recurrent_tumor 7316UP-2333-1105221 90f0199a-aa4c-4d48-8997-f1c9eae013ef_wgs_gdc_realn.bam 146875053843 BAM harmonized CPTAC3 34fb7b33-5986-4a1c-bb81-d599e1689a6a 427f719e6ca33c72708882d39aa2e41b { 'aliquot_tag': 'DUP_cd3f587f', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C827913.DUP_cd3f587f.WXS.R C827913 GBM WXS recurrent_tumor 7316UP-2333-1105221 7316UP-2333-1105221.WholeExome.RP-1303.bam 25737528247 BAM aligned CPTAC3 e2e74c07-30bd-46c6-8342-53602855857b 1802d1a1cea35c6220e56e6521f5df6b { 'aliquot_tag': 'DUP_cd3f587f', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C827913.DUP_cd3f587f.WXS.R.hg38 C827913 GBM WXS recurrent_tumor 7316UP-2333-1105221 90f0199a-aa4c-4d48-8997-f1c9eae013ef_wxs_gdc_realn.bam 35071520204 BAM harmonized CPTAC3 f4a1b799-9800-4149-b46e-8a07674ea891 2096675d9019402f616d0bbb7d848eab { 'aliquot_tag': 'DUP_cd3f587f', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C827913.DUP_fa879b5e.MethArray.Green.R C827913 GBM Methylation Array recurrent_tumor 7316UP-2527 205705520162_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 2202b70f-e796-4046-908c-1ae86bc0fb59 e62e38f42b78fa26957401ae6f0649ce { 'aliquot_tag': 'DUP_fa879b5e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C827913.DUP_fa879b5e.MethArray.Red.R C827913 GBM Methylation Array recurrent_tumor 7316UP-2527 205705520162_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 22a9dc44-12b0-4423-a48c-a6ecad43c9a8 ea36ad1427e8d2875ffa17c638a0f82c { 'aliquot_tag': 'DUP_fa879b5e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C827913.DUP_fa879b5e.WGS.R C827913 GBM WGS recurrent_tumor 7316UP-2527 7316UP-2527.WholeGenome.RP-2158.bam 52154368925 BAM aligned CPTAC3 de2c3484-c0cb-4e24-942a-23f0a8eb2ed3 e875aee1e02d798e798d3f890ee3383f { 'aliquot_tag': 'DUP_fa879b5e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } +C827913.DUP_fa879b5e.WGS.R.hg38 C827913 GBM WGS recurrent_tumor 7316UP-2527 67934a81-f8c6-4acd-a3b3-40049799a709_wgs_gdc_realn.bam 156529037966 BAM harmonized CPTAC3 defb223c-cd77-4d8c-baec-bae879fc10b8 82e2b5dea032f57305cc7eb0305783a8 { 'aliquot_tag': 'DUP_fa879b5e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C827913.DUP_fa879b5e.WXS.R C827913 GBM WXS recurrent_tumor 7316UP-2527 7316UP-2527.WholeExome.RP-1303.bam 26171566550 BAM aligned CPTAC3 06e0be11-40ec-4fd8-a9c5-bb169e9f21b1 e10f6c5d6d3772135983786d4459e1b5 { 'aliquot_tag': 'DUP_fa879b5e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } +C827913.DUP_fa879b5e.WXS.R.hg38 C827913 GBM WXS recurrent_tumor 7316UP-2527 67934a81-f8c6-4acd-a3b3-40049799a709_wxs_gdc_realn.bam 35289714577 BAM harmonized CPTAC3 cc70d409-ca55-4291-86ea-42a6392b7a38 701e3f2d79ce78dc71eee3c363d56e9d { 'aliquot_tag': 'DUP_fa879b5e', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Triplicate Recurrent Tumor DNA Aliquot' } C827913.MethArray.Green.T C827913 GBM Methylation Array tumor 7316UP-2058 205854150177_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 4576ef53-7a29-474c-b907-952e6af9d66e a5efa335b556449c9b57b4a0865f9f09 { 'aliquot_tag': 'ALQ_23b2d2e3', 'gdc_sample_type': 'Primary Tumor' } C827913.MethArray.Red.T C827913 GBM Methylation Array tumor 7316UP-2058 205854150177_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 20855ccc-7abe-48f3-bb76-223aa6dfc3cb 5fe1002571cb0ba8fbb4fe3a41f15d07 { 'aliquot_tag': 'ALQ_23b2d2e3', 'gdc_sample_type': 'Primary Tumor' } C827913.miRNA-Seq.R C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2333-1104758 210817_UNC31-K00269_0302_AHLCTHBBXY_GTGAAA_S19_L001_R1_001.unaln.bam 230796185 BAM unaligned CPTAC3 b0c18c39-a865-464f-92bb-9182e0dd93bf bac1108e0a0f5b959487f7bfca1bd088 { 'aliquot_tag': 'ALQ_45d5d392', 'gdc_sample_type': 'Recurrent Tumor' } +C827913.miRNA-Seq.R.hg38 C827913 GBM miRNA-Seq recurrent_tumor 7316UP-2333-1104758 906f97f4-bb26-4ae1-b1f0-9f56545b18b7_mirnaseq_gdc_realn.bam 256262620 BAM harmonized CPTAC3 2deaa3d3-59c6-4c0e-be74-87d39b9c7daa 773f581c1df4d7be0ec21ca6ccd58b10 { 'aliquot_tag': 'ALQ_45d5d392', 'gdc_sample_type': 'Recurrent Tumor' } C827913.WGS.N C827913 GBM WGS blood_normal 7316UP-2058-1105217 7316UP-2058-1105217.WholeGenome.RP-2158.bam 66390255486 BAM aligned CPTAC3 b77d8996-e5d1-4181-8115-bdb50a062ab5 c5760db656ccec3d5d74cfeee2f86ede { 'aliquot_tag': 'ALQ_19d82612', 'gdc_sample_type': 'Blood Derived Normal' } +C827913.WGS.N.hg38 C827913 GBM WGS blood_normal 7316UP-2058-1105217 d9f92625-c0ca-4040-bdda-9dfdbb0d898c_wgs_gdc_realn.bam 185504306702 BAM harmonized CPTAC3 f261a842-13a0-46c7-a457-6044eb7312a9 3735c87f2f1565ad2fb1121008842e3d { 'aliquot_tag': 'ALQ_19d82612', 'gdc_sample_type': 'Blood Derived Normal' } C827913.WGS.T C827913 GBM WGS tumor 7316UP-2058 7316UP-2058.WholeGenome.RP-2158.bam 57079724828 BAM aligned CPTAC3 64c68951-6295-4e75-8222-6a09e134fab5 c8721c32734a6f9227bc0e4e28eb42c2 { 'aliquot_tag': 'ALQ_23b2d2e3', 'gdc_sample_type': 'Primary Tumor' } +C827913.WGS.T.hg38 C827913 GBM WGS tumor 7316UP-2058 04ca4248-176f-4eda-89af-30230af7817d_wgs_gdc_realn.bam 169228846020 BAM harmonized CPTAC3 7fa9454f-837a-4544-a1d8-091244567425 2c937d120be7056541f59b44c5c73f31 { 'aliquot_tag': 'ALQ_23b2d2e3', 'gdc_sample_type': 'Primary Tumor' } C827913.WXS.N C827913 GBM WXS blood_normal 7316UP-2058-1105217 7316UP-2058-1105217.WholeExome.RP-1303.bam 27986255546 BAM aligned CPTAC3 f7344d7a-80b3-4e8c-8244-471c07ad98e8 8bd4d5c5bf0a6fa84b49156ce2b68e04 { 'aliquot_tag': 'ALQ_19d82612', 'gdc_sample_type': 'Blood Derived Normal' } +C827913.WXS.N.hg38 C827913 GBM WXS blood_normal 7316UP-2058-1105217 d9f92625-c0ca-4040-bdda-9dfdbb0d898c_wxs_gdc_realn.bam 38198004026 BAM harmonized CPTAC3 2dd56dbe-e71c-40cd-8c48-c799ef53aa66 50b9bba59f2900472573d46f720908e0 { 'aliquot_tag': 'ALQ_19d82612', 'gdc_sample_type': 'Blood Derived Normal' } C827913.WXS.R C827913 GBM WXS recurrent_tumor 7316UP-2527-1105195 7316UP-2527-1105195.WholeExome.RP-1303.bam 24327000092 BAM aligned CPTAC3 53703239-f5a5-411e-a5ce-e239614380ce 57fb3d0d8e8383f562a5d722be746910 { 'aliquot_tag': 'ALQ_717b0b85', 'gdc_sample_type': 'Recurrent Tumor' } +C827913.WXS.R.hg38 C827913 GBM WXS recurrent_tumor 7316UP-2527-1105195 8454ea62-6eaf-4365-9615-865f92181d00_wxs_gdc_realn.bam 32879863913 BAM harmonized CPTAC3 5b5e4d0b-4639-4fc2-8fdc-4c72efdd3b52 6a5aebddb43c876b93ff42d8ddf30732 { 'aliquot_tag': 'ALQ_717b0b85', 'gdc_sample_type': 'Recurrent Tumor' } C827913.WXS.T C827913 GBM WXS tumor 7316UP-2058 7316UP-2058.WholeExome.RP-1303.bam 23498711738 BAM aligned CPTAC3 25e176fc-33df-4190-85fd-515ccfde7a96 2dcda56718006e351e610e43408386f0 { 'aliquot_tag': 'ALQ_23b2d2e3', 'gdc_sample_type': 'Primary Tumor' } +C827913.WXS.T.hg38 C827913 GBM WXS tumor 7316UP-2058 04ca4248-176f-4eda-89af-30230af7817d_wxs_gdc_realn.bam 31571237792 BAM harmonized CPTAC3 295d757c-a37e-49f5-9d26-65dff2dbbf13 c13745f2971101900b58802e5e91278b { 'aliquot_tag': 'ALQ_23b2d2e3', 'gdc_sample_type': 'Primary Tumor' } C846363.DUP_51dcc4a3.MethArray.Green.T C846363 GBM Methylation Array tumor 7316UP-2100 205555380097_R02C01_Grn.idat 13677900 IDAT Green NA CPTAC3 35b93fcc-0db4-42fe-ae51-9b32bc6ae301 e36cedc96fdb37c5c6e0e73f95fe7c26 { 'aliquot_tag': 'DUP_51dcc4a3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C846363.DUP_51dcc4a3.MethArray.Red.T C846363 GBM Methylation Array tumor 7316UP-2100 205555380097_R02C01_Red.idat 13677900 IDAT Red NA CPTAC3 cadfb4ac-bc7a-4031-a17f-5c472255c296 3192c6758d68302e6c24de278757d65e { 'aliquot_tag': 'DUP_51dcc4a3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C846363.DUP_51dcc4a3.WGS.T C846363 GBM WGS tumor 7316UP-2100 7316UP-2100.WholeGenome.RP-2158.bam 52394539987 BAM aligned CPTAC3 a94539e9-b4fb-4d53-b3a5-9bbede2615ff b1fd2ab0b4b6f62482e46532b56ca23f { 'aliquot_tag': 'DUP_51dcc4a3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C846363.DUP_51dcc4a3.WGS.T.hg38 C846363 GBM WGS tumor 7316UP-2100 9dd34d93-e75b-4bc5-b49a-b095ba8daf3e_wgs_gdc_realn.bam 156855734828 BAM harmonized CPTAC3 f5321ae8-799c-4684-9c96-c41090f687d0 d5d75a4b88b098a6468ab0d6a402b5f0 { 'aliquot_tag': 'DUP_51dcc4a3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C846363.DUP_51dcc4a3.WXS.T C846363 GBM WXS tumor 7316UP-2100 7316UP-2100.WholeExome.RP-1303.bam 35056319324 BAM aligned CPTAC3 12336b79-920e-441d-b2cb-de3f75f31fdd 1e7f2f490f374c9e9693c1ea22ce3d1c { 'aliquot_tag': 'DUP_51dcc4a3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } +C846363.DUP_51dcc4a3.WXS.T.hg38 C846363 GBM WXS tumor 7316UP-2100 9dd34d93-e75b-4bc5-b49a-b095ba8daf3e_wxs_gdc_realn.bam 47361689745 BAM harmonized CPTAC3 83a989e8-836e-42b2-a240-f87f0858d189 aba7b19465de752e29e3ac56cf490885 { 'aliquot_tag': 'DUP_51dcc4a3', 'gdc_sample_type': 'Primary Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Primary Tumor DNA Aliquot' } C846363.DUP_a3686b92.MethArray.Green.R C846363 GBM Methylation Array recurrent_tumor 7316UP-2843 205828590002_R01C01_Grn.idat 13677905 IDAT Green NA CPTAC3 92f2414a-b6c1-41fe-874d-1ac6b51d3438 837f6503ca67b082eea484065e5615fa { 'aliquot_tag': 'DUP_a3686b92', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C846363.DUP_a3686b92.MethArray.Red.R C846363 GBM Methylation Array recurrent_tumor 7316UP-2843 205828590002_R01C01_Red.idat 13677905 IDAT Red NA CPTAC3 ed169a03-fe11-4a60-ad81-dc345c430957 5318857f34c3a46b97a06677a86994a6 { 'aliquot_tag': 'DUP_a3686b92', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C846363.DUP_a3686b92.WGS.R C846363 GBM WGS recurrent_tumor 7316UP-2843 7316UP-2843.WholeGenome.RP-2158.bam 50765217165 BAM aligned CPTAC3 e7fc300f-d2ee-4eea-ab56-ddfb38150ba5 6c8994fe35d097a49c2a58ee2f9721ba { 'aliquot_tag': 'DUP_a3686b92', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C846363.DUP_a3686b92.WGS.R.hg38 C846363 GBM WGS recurrent_tumor 7316UP-2843 d879e30f-9892-4e5e-aafb-30cfe792f307_wgs_gdc_realn.bam 152173646997 BAM harmonized CPTAC3 27d4f02b-2288-42fb-98fb-020481d1a25f 993440c2ab0109581dcfe0c2653d80bc { 'aliquot_tag': 'DUP_a3686b92', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C846363.DUP_a3686b92.WXS.R C846363 GBM WXS recurrent_tumor 7316UP-2843 7316UP-2843.WholeExome.RP-1303.bam 33943432437 BAM aligned CPTAC3 31af42c6-e11c-49c5-ab77-dd8dd863bdcc 4b7a30c10f231ec886e6de47edd91a3a { 'aliquot_tag': 'DUP_a3686b92', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } +C846363.DUP_a3686b92.WXS.R.hg38 C846363 GBM WXS recurrent_tumor 7316UP-2843 d879e30f-9892-4e5e-aafb-30cfe792f307_wxs_gdc_realn.bam 46267651279 BAM harmonized CPTAC3 6fa6f528-cbe2-436f-8ae6-0e2c6fda665e 47b0f765b9f5a022864a1e51e0d86690 { 'aliquot_tag': 'DUP_a3686b92', 'gdc_sample_type': 'Recurrent Tumor', 'aliquot_annotation': 'Duplicate Item: CHOP GBM Duplicate Recurrent Tumor DNA Aliquot' } C846363.miRNA-Seq.R C846363 GBM miRNA-Seq recurrent_tumor 7316UP-2843-1104781 220125_UNC32-K00270_0311_AHMNYYBBXY_CGGAAT_S10_L002_R1_001.unaln.bam 324967490 BAM unaligned CPTAC3 26a84bda-5a37-4951-8a78-f77b7babb8da cb2ba09a4a8a243c4c12568701bb4d29 { 'aliquot_tag': 'ALQ_485a8946', 'gdc_sample_type': 'Recurrent Tumor' } +C846363.miRNA-Seq.R.hg38 C846363 GBM miRNA-Seq recurrent_tumor 7316UP-2843-1104781 6b9a74ef-7985-4b9c-b9ef-b9c04336797a_mirnaseq_gdc_realn.bam 363780993 BAM harmonized CPTAC3 f8bc6740-78b9-454f-bf61-36bb005d2b4f 247d15d262568def382dab4672c56014 { 'aliquot_tag': 'ALQ_485a8946', 'gdc_sample_type': 'Recurrent Tumor' } C846363.miRNA-Seq.T C846363 GBM miRNA-Seq tumor 7316UP-2100-1104756 210817_UNC31-K00269_0302_AHLCTHBBXY_GTAGAG_S17_L001_R1_001.unaln.bam 206124662 BAM unaligned CPTAC3 2178becd-560c-4622-a785-7e4cc3f4f170 240fc2203bff324b9826013bfceb2c87 { 'aliquot_tag': 'ALQ_28bbc092', 'gdc_sample_type': 'Primary Tumor' } -C846363.RNA-Seq.R1_L001.T C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R1_001.fastq.gz 3798490040 FASTQ R1_L001 unaligned CPTAC3 05606bfc-9000-4aa7-a4d1-694fc9ad6410 2534e9e52e34bae5f5e46e835aa08896 { 'aliquot_tag': 'ALQ_28bbc092', 'gdc_sample_type': 'Primary Tumor' } -C846363.RNA-Seq.R1_L005.R C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R1_001.fastq.gz 3998179847 FASTQ R1_L005 unaligned CPTAC3 ed500025-1eaf-4dde-8174-8803c579bb73 8631c4f69148ceb691f1273b8bfe69b7 { 'aliquot_tag': 'ALQ_485a8946', 'gdc_sample_type': 'Recurrent Tumor' } -C846363.RNA-Seq.R2_L001.T C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R2_001.fastq.gz 4184403140 FASTQ R2_L001 unaligned CPTAC3 347ecdcb-c3a6-4292-9e5c-cf7f6e0c58ca cade5e883571d9a24519dc92a3cb5d0b { 'aliquot_tag': 'ALQ_28bbc092', 'gdc_sample_type': 'Primary Tumor' } -C846363.RNA-Seq.R2_L005.R C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R2_001.fastq.gz 4319818318 FASTQ R2_L005 unaligned CPTAC3 f3c87ab0-01ca-4b90-8c82-bd999d775e65 070bd09e55b4e5f039cdabb69404ea58 { 'aliquot_tag': 'ALQ_485a8946', 'gdc_sample_type': 'Recurrent Tumor' } +C846363.miRNA-Seq.T.hg38 C846363 GBM miRNA-Seq tumor 7316UP-2100-1104756 50823f6f-290b-40cd-abda-b32f1b01a411_mirnaseq_gdc_realn.bam 241255644 BAM harmonized CPTAC3 e485b3c8-2d9d-4bf2-95ae-42c6b8cd1bdc f6a512354ea10d2ad63b865a7171493f { 'aliquot_tag': 'ALQ_28bbc092', 'gdc_sample_type': 'Primary Tumor' } +C846363.RNA-Seq.chimeric.R.hg38 C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 3c21f319-f324-48a7-bce9-d3b5f9b76993.rna_seq.chimeric.gdc_realn.bam 98350894 BAM chimeric harmonized CPTAC3 99393235-61e6-4aa4-bb28-5d13771fd425 4566aec83559d0e7a8222794e054aff5 { 'aliquot_tag': 'ALQ_485a8946', 'gdc_sample_type': 'Recurrent Tumor' } +C846363.RNA-Seq.chimeric.T.hg38 C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 d34bd8f0-1550-4be0-a5c7-4421e171ed00.rna_seq.chimeric.gdc_realn.bam 91119681 BAM chimeric harmonized CPTAC3 f99b08f6-acf4-4354-8ac7-1cebb0d8f95a f86cde1bc330198725cef5f9f4c21a82 { 'aliquot_tag': 'ALQ_28bbc092', 'gdc_sample_type': 'Primary Tumor' } +C846363.RNA-Seq.genomic.R.hg38 C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 3c21f319-f324-48a7-bce9-d3b5f9b76993.rna_seq.genomic.gdc_realn.bam 8713657595 BAM genomic harmonized CPTAC3 ca8264d0-25c2-409e-b8ea-59f81acace26 c49c629716b727caa3e2af34f824317c { 'aliquot_tag': 'ALQ_485a8946', 'gdc_sample_type': 'Recurrent Tumor' } +C846363.RNA-Seq.genomic.T.hg38 C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 d34bd8f0-1550-4be0-a5c7-4421e171ed00.rna_seq.genomic.gdc_realn.bam 7913953929 BAM genomic harmonized CPTAC3 36b7e9af-4115-4929-84b9-4a1fc44144bf 439d9f75e85bb8d939c38354c7f7300f { 'aliquot_tag': 'ALQ_28bbc092', 'gdc_sample_type': 'Primary Tumor' } +C846363.RNA-Seq.R1_L001.T C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R1_001.fastq.gz 3798490040 FASTQ R1_L001 unaligned CPTAC3 05606bfc-9000-4aa7-a4d1-694fc9ad6410 2534e9e52e34bae5f5e46e835aa08896 { 'aliquot_tag': 'ALQ_28bbc092', 'gdc_sample_type': 'Primary Tumor', 'read': 'R1', 'lane': 'L001' } +C846363.RNA-Seq.R1_L005.R C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R1_001.fastq.gz 3998179847 FASTQ R1_L005 unaligned CPTAC3 ed500025-1eaf-4dde-8174-8803c579bb73 8631c4f69148ceb691f1273b8bfe69b7 { 'aliquot_tag': 'ALQ_485a8946', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R1', 'lane': 'L005' } +C846363.RNA-Seq.R2_L001.T C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 210713_UNC32-K00270_0291_AHLK5VBBXY_TACCGAGG-CCTGAACT_S3_L001_R2_001.fastq.gz 4184403140 FASTQ R2_L001 unaligned CPTAC3 347ecdcb-c3a6-4292-9e5c-cf7f6e0c58ca cade5e883571d9a24519dc92a3cb5d0b { 'aliquot_tag': 'ALQ_28bbc092', 'gdc_sample_type': 'Primary Tumor', 'read': 'R2', 'lane': 'L001' } +C846363.RNA-Seq.R2_L005.R C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 210811_UNC31-K00269_0301_AHLLC5BBXY_AGCTCGCT-GCAGAATC_S17_L005_R2_001.fastq.gz 4319818318 FASTQ R2_L005 unaligned CPTAC3 f3c87ab0-01ca-4b90-8c82-bd999d775e65 070bd09e55b4e5f039cdabb69404ea58 { 'aliquot_tag': 'ALQ_485a8946', 'gdc_sample_type': 'Recurrent Tumor', 'read': 'R2', 'lane': 'L005' } +C846363.RNA-Seq.transcriptome.R.hg38 C846363 GBM RNA-Seq recurrent_tumor 7316UP-2843-1104781 3c21f319-f324-48a7-bce9-d3b5f9b76993.rna_seq.transcriptome.gdc_realn.bam 14593630517 BAM transcriptome harmonized CPTAC3 8a16d438-af31-4412-abb1-edf3892531db b1d8d9f216a64dba0ce32e4525485599 { 'aliquot_tag': 'ALQ_485a8946', 'gdc_sample_type': 'Recurrent Tumor' } +C846363.RNA-Seq.transcriptome.T.hg38 C846363 GBM RNA-Seq tumor 7316UP-2100-1104756 d34bd8f0-1550-4be0-a5c7-4421e171ed00.rna_seq.transcriptome.gdc_realn.bam 17800881750 BAM transcriptome harmonized CPTAC3 de568fae-4c3e-4133-b1a3-f85ead385635 7356bc5bcd574372727e2bbe6625a67a { 'aliquot_tag': 'ALQ_28bbc092', 'gdc_sample_type': 'Primary Tumor' } C846363.WGS.N C846363 GBM WGS blood_normal 7316UP-2100-1105216 7316UP-2100-1105216.WholeGenome.RP-2158.bam 45438721378 BAM aligned CPTAC3 42975547-bcff-41fb-a890-cc0fbe1b30c9 065d5dfc7f7234624c2d3eb7ee4a4647 { 'aliquot_tag': 'ALQ_f2a0a018', 'gdc_sample_type': 'Blood Derived Normal' } +C846363.WGS.N.hg38 C846363 GBM WGS blood_normal 7316UP-2100-1105216 1c7ec3f4-e1ac-4861-a0b3-7b9590b20b76_wgs_gdc_realn.bam 134274366455 BAM harmonized CPTAC3 31163cb8-7e0a-4bee-b601-eac65a5f9ba8 4833ba43a257ff64f5ab6adf293caba3 { 'aliquot_tag': 'ALQ_f2a0a018', 'gdc_sample_type': 'Blood Derived Normal' } C846363.WGS.T C846363 GBM WGS tumor 7316UP-2100-1105219 7316UP-2100-1105219.WholeGenome.RP-2158.bam 51804323984 BAM aligned CPTAC3 7fdcdd36-e083-470f-a770-6a005da83f68 682c7d43a1a8f2b5f53bf38d22eefcbd { 'aliquot_tag': 'ALQ_621fbd89', 'gdc_sample_type': 'Primary Tumor' } +C846363.WGS.T.hg38 C846363 GBM WGS tumor 7316UP-2100-1105219 d895aa40-8999-4f0b-be15-694f1bdb380c_wgs_gdc_realn.bam 148362374967 BAM harmonized CPTAC3 0189a0e1-989c-4c4f-bac9-347ea63ce6d9 d6b84549d3efdff96a5823072f8c46b7 { 'aliquot_tag': 'ALQ_621fbd89', 'gdc_sample_type': 'Primary Tumor' } C846363.WXS.N C846363 GBM WXS blood_normal 7316UP-2100-1105216 7316UP-2100-1105216.WholeExome.RP-1303.bam 29207285501 BAM aligned CPTAC3 bd45cd04-f40e-405e-9bc2-1c42e8614cb1 4b81d4fab0d67c8ccd13a92280b158a9 { 'aliquot_tag': 'ALQ_f2a0a018', 'gdc_sample_type': 'Blood Derived Normal' } +C846363.WXS.N.hg38 C846363 GBM WXS blood_normal 7316UP-2100-1105216 1c7ec3f4-e1ac-4861-a0b3-7b9590b20b76_wxs_gdc_realn.bam 40366873272 BAM harmonized CPTAC3 1a0e8e5c-708a-45fd-853f-e8d2ceed7813 720a491d2c097a57f7f8a5693e4b72fe { 'aliquot_tag': 'ALQ_f2a0a018', 'gdc_sample_type': 'Blood Derived Normal' } C846363.WXS.R C846363 GBM WXS recurrent_tumor 7316UP-2843-1105244 7316UP-2843-1105244.WholeExome.RP-1303.bam 23343495743 BAM aligned CPTAC3 b8590e83-d959-46b0-90aa-88bc644962fc f99e05802a978632cdb7d8a20b23ba84 { 'aliquot_tag': 'ALQ_2af2974b', 'gdc_sample_type': 'Recurrent Tumor' } +C846363.WXS.R.hg38 C846363 GBM WXS recurrent_tumor 7316UP-2843-1105244 c26c57b3-b748-4436-bc41-50eb6f46fcc2_wxs_gdc_realn.bam 31313947714 BAM harmonized CPTAC3 7137ecfb-10ec-467f-9073-534ae0f3b688 66737f31a1626d567422b78d8a6ad6e5 { 'aliquot_tag': 'ALQ_2af2974b', 'gdc_sample_type': 'Recurrent Tumor' } C846363.WXS.T C846363 GBM WXS tumor 7316UP-2100-1105219 7316UP-2100-1105219.WholeExome.RP-1303.bam 15815239997 BAM aligned CPTAC3 57b43f3a-59cf-4057-9240-5c0965ff2f09 caa81a2c6b3a25623daaf3b4e3918b00 { 'aliquot_tag': 'ALQ_621fbd89', 'gdc_sample_type': 'Primary Tumor' } +C846363.WXS.T.hg38 C846363 GBM WXS tumor 7316UP-2100-1105219 d895aa40-8999-4f0b-be15-694f1bdb380c_wxs_gdc_realn.bam 22124861490 BAM harmonized CPTAC3 e3e1eeb8-e749-4520-83e2-3ae1091a7207 464cfbd7492f2719709a8776d6c340ad { 'aliquot_tag': 'ALQ_621fbd89', 'gdc_sample_type': 'Primary Tumor' } GTEX-NPJ7-0011-R10A-SM-HAKXW.miRNA-Seq.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM miRNA-Seq tissue_normal CPT0286590000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTAGAG_S46_L004_R1_001.unaln.bam 164935939 BAM unaligned CPTAC3 b04dd504-b320-4b74-8b55-245d542a1591 99204b51c7bca4b47061d2e1b9ab03a7 { 'aliquot_tag': 'ALQ_dbd9aa06', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-NPJ7-0011-R10A-SM-HAKXW.miRNA-Seq.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM miRNA-Seq tissue_normal CPT0286590000 59a32933-dcc8-4347-b3ea-ac4f0b41a1ed_mirnaseq_gdc_realn.bam 186345250 BAM harmonized CPTAC3 8d438eb7-7ede-4df3-9f1e-47063e2c0428 5297814bbb233db6b16068da94dcac73 { 'aliquot_tag': 'ALQ_dbd9aa06', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.chimeric.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.chimeric.gdc_realn.bam 59007709 BAM chimeric harmonized CPTAC3 391ac2fa-396b-4067-86fa-fdb010f0f8d5 8d99f60cef1dc655309732b42f26461f { 'aliquot_tag': 'ALQ_dbd9aa06', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.genomic.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.genomic.gdc_realn.bam 8042385019 BAM genomic harmonized CPTAC3 a1238f4c-c75e-43ab-a581-1885834de46a 001e5954f3d632b0259a5a1fdf36a286 { 'aliquot_tag': 'ALQ_dbd9aa06', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.R1_L005.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R1_001.fastq.gz 3765743130 FASTQ R1_L005 unaligned CPTAC3 bc06c745-5e1d-4360-98b5-5932622e5ad6 f8bdda1f1e5572a24b4ee3ce7b40fcd2 { 'aliquot_tag': 'ALQ_dbd9aa06', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.R2_L005.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R2_001.fastq.gz 4079829284 FASTQ R2_L005 unaligned CPTAC3 0c2c947c-f8b3-4cf4-aa09-c4a484c21efc 293130ebc12c8588458aa3f0f66623e9 { 'aliquot_tag': 'ALQ_dbd9aa06', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.genomic.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.genomic.gdc_realn.bam 8042385019 BAM genomic harmonized CPTAC3 cabfadbd-5245-4403-8315-10e6982d9c8e 001e5954f3d632b0259a5a1fdf36a286 { 'aliquot_tag': 'ALQ_dbd9aa06', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.R1_L005.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R1_001.fastq.gz 3765743130 FASTQ R1_L005 unaligned CPTAC3 bc06c745-5e1d-4360-98b5-5932622e5ad6 f8bdda1f1e5572a24b4ee3ce7b40fcd2 { 'aliquot_tag': 'ALQ_dbd9aa06', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.R2_L005.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R2_001.fastq.gz 4079829284 FASTQ R2_L005 unaligned CPTAC3 0c2c947c-f8b3-4cf4-aa09-c4a484c21efc 293130ebc12c8588458aa3f0f66623e9 { 'aliquot_tag': 'ALQ_dbd9aa06', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.transcriptome.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 7bd0a15f-202f-44c4-8947-8ba06fa2e9a2.rna_seq.transcriptome.gdc_realn.bam 10109767872 BAM transcriptome harmonized CPTAC3 0a27c83b-fa20-4694-92d9-07edc67cce35 32d6f2eafa0146bd48ff813ac59b89da { 'aliquot_tag': 'ALQ_dbd9aa06', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-P44H-0011-R10A-SM-HAKXX.miRNA-Seq.A GTEX-P44H-0011-R10A-SM-HAKXX GBM miRNA-Seq tissue_normal CPT0286600000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTGGCC_S5_L004_R1_001.unaln.bam 232944125 BAM unaligned CPTAC3 9215c9ae-265c-4863-b79c-2cefb9211a3b c4a772d8bfe747d235d6b36ef231b54f { 'aliquot_tag': 'ALQ_505dbad9', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-P44H-0011-R10A-SM-HAKXX.miRNA-Seq.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM miRNA-Seq tissue_normal CPT0286600000 a1dfef8b-8633-4127-8bf3-ffb0038d94c3_mirnaseq_gdc_realn.bam 255528989 BAM harmonized CPTAC3 043612f4-af3a-4875-9e05-73a0cca6e184 3e850f62007829c7133df2f20422b51c { 'aliquot_tag': 'ALQ_505dbad9', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.chimeric.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.chimeric.gdc_realn.bam 66511632 BAM chimeric harmonized CPTAC3 65568bf2-5e87-4828-8e9c-468db769f3e6 b0ac031872ef8c6f5adae5f2c7068798 { 'aliquot_tag': 'ALQ_505dbad9', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.genomic.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.genomic.gdc_realn.bam 7999492501 BAM genomic harmonized CPTAC3 7885a051-26a0-449a-a512-3fe6499b1096 cdecada683893afcab3540dfa0701a06 { 'aliquot_tag': 'ALQ_505dbad9', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.R1_L004.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R1_001.fastq.gz 3585455144 FASTQ R1_L004 unaligned CPTAC3 eaee871f-6c1c-4b68-ae45-c02b26e03112 e43d9aa30db9773c7ec59aa287f8987c { 'aliquot_tag': 'ALQ_505dbad9', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.R2_L004.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R2_001.fastq.gz 3823964368 FASTQ R2_L004 unaligned CPTAC3 ac5d5942-5109-443b-a92f-a2cc70ea4764 03b608c12f6090518048609ae436d54a { 'aliquot_tag': 'ALQ_505dbad9', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.genomic.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.genomic.gdc_realn.bam 7999492501 BAM genomic harmonized CPTAC3 aade6614-661a-4070-87ef-938205656ddb cdecada683893afcab3540dfa0701a06 { 'aliquot_tag': 'ALQ_505dbad9', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.R1_L004.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R1_001.fastq.gz 3585455144 FASTQ R1_L004 unaligned CPTAC3 eaee871f-6c1c-4b68-ae45-c02b26e03112 e43d9aa30db9773c7ec59aa287f8987c { 'aliquot_tag': 'ALQ_505dbad9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.R2_L004.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R2_001.fastq.gz 3823964368 FASTQ R2_L004 unaligned CPTAC3 ac5d5942-5109-443b-a92f-a2cc70ea4764 03b608c12f6090518048609ae436d54a { 'aliquot_tag': 'ALQ_505dbad9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.transcriptome.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 5c5b231f-5f96-4a4e-8020-a48218ec780a.rna_seq.transcriptome.gdc_realn.bam 12363677026 BAM transcriptome harmonized CPTAC3 75842b27-96ac-4018-b1f3-469c4cc01c5f 17f4e1e58187c93d76a5ddd50f58932e { 'aliquot_tag': 'ALQ_505dbad9', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.chimeric.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.chimeric.gdc_realn.bam 42694127 BAM chimeric harmonized CPTAC3 530ad5b6-dc87-4324-8628-f3e99b5a3e1d 275c0dc3b6882a09cb12a493aeebd86e { 'aliquot_tag': 'ALQ_59893dd7', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.genomic.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.genomic.gdc_realn.bam 7209390016 BAM genomic harmonized CPTAC3 418b0298-8f34-4ab4-97aa-317bbd2820ec fdbd922682763dc88b9408d8a77bd7ef { 'aliquot_tag': 'ALQ_59893dd7', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.R1_L006.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R1_001.fastq.gz 3415853912 FASTQ R1_L006 unaligned CPTAC3 3c47d5e3-b037-4bc6-80c2-eba31eeb58e0 1142a485efe83ea669c4dc28c77eeae2 { 'aliquot_tag': 'ALQ_59893dd7', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.R2_L006.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R2_001.fastq.gz 3709398511 FASTQ R2_L006 unaligned CPTAC3 222a2d66-7b96-4170-bf35-7b9c23d8953f 14cbbfc67bde2f79877cd7e8c927d607 { 'aliquot_tag': 'ALQ_59893dd7', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.genomic.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.genomic.gdc_realn.bam 7209390016 BAM genomic harmonized CPTAC3 03bd5ecf-022b-46b9-bf66-e39566aa5944 fdbd922682763dc88b9408d8a77bd7ef { 'aliquot_tag': 'ALQ_59893dd7', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.R1_L006.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R1_001.fastq.gz 3415853912 FASTQ R1_L006 unaligned CPTAC3 3c47d5e3-b037-4bc6-80c2-eba31eeb58e0 1142a485efe83ea669c4dc28c77eeae2 { 'aliquot_tag': 'ALQ_59893dd7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.R2_L006.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R2_001.fastq.gz 3709398511 FASTQ R2_L006 unaligned CPTAC3 222a2d66-7b96-4170-bf35-7b9c23d8953f 14cbbfc67bde2f79877cd7e8c927d607 { 'aliquot_tag': 'ALQ_59893dd7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.transcriptome.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 f1543bac-5876-406f-9c2d-9e21399ece17.rna_seq.transcriptome.gdc_realn.bam 8434383621 BAM transcriptome harmonized CPTAC3 a6dddff1-421e-4f4d-a2a9-162d370ce2da f154eb13a3657e23f809d783d9d6e10b { 'aliquot_tag': 'ALQ_59893dd7', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-R55F-0011-R10A-SM-HAKXY.miRNA-Seq.A GTEX-R55F-0011-R10A-SM-HAKXY GBM miRNA-Seq tissue_normal CPT0286550000 190813_UNC32-K00270_0196_AH5MCWBBXY_AGTCAA_S42_L004_R1_001.unaln.bam 353147146 BAM unaligned CPTAC3 46fdcb55-7313-4293-981a-ee424abf1681 57cbe3e56107a6921f3f3651e96ba6c4 { 'aliquot_tag': 'ALQ_1e294707', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-R55F-0011-R10A-SM-HAKXY.miRNA-Seq.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM miRNA-Seq tissue_normal CPT0286550000 fd4e6d5f-3714-4791-9122-7a56650788b5_mirnaseq_gdc_realn.bam 403589976 BAM harmonized CPTAC3 a51bec4b-ffa3-4c69-ac7d-d35fc070a93f 50f6f67ce92a34daa193d2f63f30514c { 'aliquot_tag': 'ALQ_1e294707', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.chimeric.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.chimeric.gdc_realn.bam 104086707 BAM chimeric harmonized CPTAC3 43efe9fa-08c0-4002-b79b-5c8fc5703098 ee0849b993110e33df96332fc428f02b { 'aliquot_tag': 'ALQ_1e294707', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.genomic.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.genomic.gdc_realn.bam 9804688719 BAM genomic harmonized CPTAC3 51fb0ea4-9050-40a5-8813-9f10e5a63949 9671438ae68c85c36c409f7fa98dac34 { 'aliquot_tag': 'ALQ_1e294707', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.R1_L006.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R1_001.fastq.gz 4465868783 FASTQ R1_L006 unaligned CPTAC3 ebbf052b-938b-4978-87bb-e203ecd9ea8d e0733607fd2f05ad4932dd4d8cc6f597 { 'aliquot_tag': 'ALQ_1e294707', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.R2_L006.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R2_001.fastq.gz 4376071746 FASTQ R2_L006 unaligned CPTAC3 5493009c-4e84-42d1-845e-f597e8538bdf aaec4180b35509ed2ed4785de4a4a201 { 'aliquot_tag': 'ALQ_1e294707', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.genomic.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.genomic.gdc_realn.bam 9804688719 BAM genomic harmonized CPTAC3 45c87aac-c1fa-4852-b50b-e9159328c34d 9671438ae68c85c36c409f7fa98dac34 { 'aliquot_tag': 'ALQ_1e294707', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.R1_L006.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R1_001.fastq.gz 4465868783 FASTQ R1_L006 unaligned CPTAC3 ebbf052b-938b-4978-87bb-e203ecd9ea8d e0733607fd2f05ad4932dd4d8cc6f597 { 'aliquot_tag': 'ALQ_1e294707', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.R2_L006.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R2_001.fastq.gz 4376071746 FASTQ R2_L006 unaligned CPTAC3 5493009c-4e84-42d1-845e-f597e8538bdf aaec4180b35509ed2ed4785de4a4a201 { 'aliquot_tag': 'ALQ_1e294707', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.transcriptome.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 dce9a213-293c-475f-8cdd-68146abd8269.rna_seq.transcriptome.gdc_realn.bam 10575695024 BAM transcriptome harmonized CPTAC3 865815aa-c9ea-4e3b-addd-cf113af77ac7 21c123a30d80e484dd094d68c0190327 { 'aliquot_tag': 'ALQ_1e294707', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-RN5K-0011-R10A-SM-HAKXU.miRNA-Seq.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM miRNA-Seq tissue_normal CPT0286540000 190813_UNC32-K00270_0196_AH5MCWBBXY_CTTGTA_S41_L004_R1_001.unaln.bam 362426253 BAM unaligned CPTAC3 206ee6f5-9a67-413f-bf39-6973090d9318 a32c794f0004c67d13834a8a4ec2d67a { 'aliquot_tag': 'ALQ_23496eb7', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-RN5K-0011-R10A-SM-HAKXU.miRNA-Seq.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM miRNA-Seq tissue_normal CPT0286540000 bec258dd-30cd-4908-b5f9-e00bf74e3cb9_mirnaseq_gdc_realn.bam 402752717 BAM harmonized CPTAC3 4ba89b6f-5b90-4449-987b-9ffaf6553cf2 16544569a2c93fbf721ae36eec78a069 { 'aliquot_tag': 'ALQ_23496eb7', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.chimeric.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.chimeric.gdc_realn.bam 157294935 BAM chimeric harmonized CPTAC3 0cb12c33-b3f1-4f16-926b-0cccd6f1a0db 05d132a3c99d4b6a27e5c9278c87df48 { 'aliquot_tag': 'ALQ_23496eb7', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.genomic.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.genomic.gdc_realn.bam 11745035991 BAM genomic harmonized CPTAC3 e31a79b0-956a-4a6d-a4dd-5c7ae7306b94 b905abf4116596eef7bcb486ff946db1 { 'aliquot_tag': 'ALQ_23496eb7', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.R1_L006.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R1_001.fastq.gz 5085066252 FASTQ R1_L006 unaligned CPTAC3 ae85444e-59ad-43b5-bab7-4c138b7291af ad92a12cdcb9075829349f6c7ae37196 { 'aliquot_tag': 'ALQ_23496eb7', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.R2_L006.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R2_001.fastq.gz 5392721495 FASTQ R2_L006 unaligned CPTAC3 41592dab-9730-40dc-8c7a-1c164445e2fc c83c21e32099a08875aa8a1c13fee84e { 'aliquot_tag': 'ALQ_23496eb7', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.genomic.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.genomic.gdc_realn.bam 11745035991 BAM genomic harmonized CPTAC3 3c625917-2193-428f-b5fe-55ed7673ed57 b905abf4116596eef7bcb486ff946db1 { 'aliquot_tag': 'ALQ_23496eb7', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.R1_L006.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R1_001.fastq.gz 5085066252 FASTQ R1_L006 unaligned CPTAC3 ae85444e-59ad-43b5-bab7-4c138b7291af ad92a12cdcb9075829349f6c7ae37196 { 'aliquot_tag': 'ALQ_23496eb7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L006' } +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.R2_L006.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R2_001.fastq.gz 5392721495 FASTQ R2_L006 unaligned CPTAC3 41592dab-9730-40dc-8c7a-1c164445e2fc c83c21e32099a08875aa8a1c13fee84e { 'aliquot_tag': 'ALQ_23496eb7', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L006' } GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.transcriptome.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 3f5e42a8-7295-4a29-9bca-771a361324ab.rna_seq.transcriptome.gdc_realn.bam 10901357061 BAM transcriptome harmonized CPTAC3 76fa07ec-8149-46d7-b1d7-5c97f55d6d4f 00d0da525632444e34fc0205b99fad69 { 'aliquot_tag': 'ALQ_23496eb7', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-RU72-0011-R10A-SM-HAKXS.miRNA-Seq.A GTEX-RU72-0011-R10A-SM-HAKXS GBM miRNA-Seq tissue_normal CPT0286620000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTCCGC_S3_L004_R1_001.unaln.bam 216076917 BAM unaligned CPTAC3 f8569758-ef9d-4d7c-bc10-2b2e8278dc5e bd6f1b1e46ab00c5a272389f9b35c476 { 'aliquot_tag': 'ALQ_2a9de9b9', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-RU72-0011-R10A-SM-HAKXS.miRNA-Seq.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM miRNA-Seq tissue_normal CPT0286620000 6d2665ea-80dc-47cc-86ee-0689f34bacac_mirnaseq_gdc_realn.bam 241146961 BAM harmonized CPTAC3 73a5dc2c-3604-4360-a23c-c417a43b8f52 e891e693b2cbc468fb1d0097d16e7c20 { 'aliquot_tag': 'ALQ_2a9de9b9', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.chimeric.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.chimeric.gdc_realn.bam 66673576 BAM chimeric harmonized CPTAC3 375818fa-9ca9-45d6-a320-85dd98be6fc0 25baa2227f406ec047f92f5bee8913d0 { 'aliquot_tag': 'ALQ_2a9de9b9', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.genomic.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.genomic.gdc_realn.bam 9466463129 BAM genomic harmonized CPTAC3 78fa9ba5-7a01-4e97-814f-01992e3d5ce1 68b4578e14c4adb2a3fc0ea945735710 { 'aliquot_tag': 'ALQ_2a9de9b9', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.R1_L005.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R1_001.fastq.gz 4343747954 FASTQ R1_L005 unaligned CPTAC3 991c731a-f70e-46c6-82f8-fe5b1c4f2014 4e46a4a777ab0eaaf2339dd94a0ac815 { 'aliquot_tag': 'ALQ_2a9de9b9', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.R2_L005.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R2_001.fastq.gz 4681867735 FASTQ R2_L005 unaligned CPTAC3 169530bc-e43c-40b8-938d-55fc0c5afbb2 191d575dd05a76e0f293cdb4474a4c83 { 'aliquot_tag': 'ALQ_2a9de9b9', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.genomic.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.genomic.gdc_realn.bam 9466463129 BAM genomic harmonized CPTAC3 52ac11b4-a30d-41af-a451-98d8fb381068 68b4578e14c4adb2a3fc0ea945735710 { 'aliquot_tag': 'ALQ_2a9de9b9', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.R1_L005.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R1_001.fastq.gz 4343747954 FASTQ R1_L005 unaligned CPTAC3 991c731a-f70e-46c6-82f8-fe5b1c4f2014 4e46a4a777ab0eaaf2339dd94a0ac815 { 'aliquot_tag': 'ALQ_2a9de9b9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.R2_L005.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R2_001.fastq.gz 4681867735 FASTQ R2_L005 unaligned CPTAC3 169530bc-e43c-40b8-938d-55fc0c5afbb2 191d575dd05a76e0f293cdb4474a4c83 { 'aliquot_tag': 'ALQ_2a9de9b9', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.transcriptome.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 62a23bb9-be3e-4e5b-8faf-ece06c60a4d9.rna_seq.transcriptome.gdc_realn.bam 10306678253 BAM transcriptome harmonized CPTAC3 3b0ada5c-2071-4b17-91cf-0062a7bf1e81 8f0e68f2f86e1b51c6df72abbe958936 { 'aliquot_tag': 'ALQ_2a9de9b9', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-UTHO-0011-R10A-SM-HAKY2.miRNA-Seq.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM miRNA-Seq tissue_normal CPT0286570000 190813_UNC32-K00270_0196_AH5MCWBBXY_ATGTCA_S44_L004_R1_001.unaln.bam 222201696 BAM unaligned CPTAC3 88011b61-b19a-4364-92dc-6bc5016b3431 4154040b94c7f71641e1e34aeb3df546 { 'aliquot_tag': 'ALQ_64e91467', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-UTHO-0011-R10A-SM-HAKY2.miRNA-Seq.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM miRNA-Seq tissue_normal CPT0286570000 9b53c058-3e78-447b-bf8a-3ebd67b36176_mirnaseq_gdc_realn.bam 261541459 BAM harmonized CPTAC3 4a26be34-750c-41cf-ab2e-db70e3b1343f 93f7413eb052a2026331584c8ce2b968 { 'aliquot_tag': 'ALQ_64e91467', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.chimeric.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.chimeric.gdc_realn.bam 44368182 BAM chimeric harmonized CPTAC3 caf4913a-c5a1-4c4a-9075-2513d1399728 c1c3d86d5e32c6c16482fac57a53e43a { 'aliquot_tag': 'ALQ_64e91467', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.genomic.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.genomic.gdc_realn.bam 6966540778 BAM genomic harmonized CPTAC3 870fe78e-642e-4530-ae5a-8f17e3568b16 acc22dca3fad8ea277759185b1b9bbda { 'aliquot_tag': 'ALQ_64e91467', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.R1_L005.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R1_001.fastq.gz 3264885576 FASTQ R1_L005 unaligned CPTAC3 440b3a6f-55b1-4a6e-b60f-875dff4a1648 9096833e0ea58b49e95ffd713f9cc04c { 'aliquot_tag': 'ALQ_64e91467', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.R2_L005.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R2_001.fastq.gz 3488807105 FASTQ R2_L005 unaligned CPTAC3 f64b4605-5731-4f25-b62a-c0bb5e52402e e3f6403767708b7208df0fed4d20452a { 'aliquot_tag': 'ALQ_64e91467', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.genomic.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.genomic.gdc_realn.bam 6966540778 BAM genomic harmonized CPTAC3 d8688d61-cba6-44a2-a06e-9213e8ab7775 acc22dca3fad8ea277759185b1b9bbda { 'aliquot_tag': 'ALQ_64e91467', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.R1_L005.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R1_001.fastq.gz 3264885576 FASTQ R1_L005 unaligned CPTAC3 440b3a6f-55b1-4a6e-b60f-875dff4a1648 9096833e0ea58b49e95ffd713f9cc04c { 'aliquot_tag': 'ALQ_64e91467', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L005' } +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.R2_L005.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R2_001.fastq.gz 3488807105 FASTQ R2_L005 unaligned CPTAC3 f64b4605-5731-4f25-b62a-c0bb5e52402e e3f6403767708b7208df0fed4d20452a { 'aliquot_tag': 'ALQ_64e91467', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L005' } GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.transcriptome.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 0fdb2f1a-f0d9-4ae6-9de4-98aa7b846330.rna_seq.transcriptome.gdc_realn.bam 7406868324 BAM transcriptome harmonized CPTAC3 fc3db4af-b992-4f88-8592-e98b37feded8 c699844f816f139a144d16f68bf168a7 { 'aliquot_tag': 'ALQ_64e91467', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-WVLH-0011-R10A-SM-HAKXZ.miRNA-Seq.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM miRNA-Seq tissue_normal CPT0286610000 190828_UNC32-K00270_0200_BH7GVJBBXY_GTTTCG_S143_L008_R1_001.unaln.bam 283348378 BAM unaligned CPTAC3 a47b8637-33a3-4e49-8897-a5b08fec15de b0c874e7cb87ae81397803412e1d0c0a { 'aliquot_tag': 'ALQ_6d3d9369', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-WVLH-0011-R10A-SM-HAKXZ.miRNA-Seq.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM miRNA-Seq tissue_normal CPT0286610000 34c82ef7-3cfc-4161-89b4-9b20f770af83_mirnaseq_gdc_realn.bam 320278768 BAM harmonized CPTAC3 e9c05438-5dc3-4a20-8256-2086a96ef3e6 08b53e7ff898f19df423240b3614f853 { 'aliquot_tag': 'ALQ_6d3d9369', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.chimeric.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.chimeric.gdc_realn.bam 69113219 BAM chimeric harmonized CPTAC3 985b268b-bb9e-4164-8e5b-f3d86092c5d6 0cd3bba3f6cec799f1692aadb1780049 { 'aliquot_tag': 'ALQ_6d3d9369', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.genomic.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.genomic.gdc_realn.bam 8913744384 BAM genomic harmonized CPTAC3 00d80415-b707-4782-af80-052a4248f02a 2022f1892b6a1686639155ba3034bb4c { 'aliquot_tag': 'ALQ_6d3d9369', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.R1_L004.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R1_001.fastq.gz 4306549496 FASTQ R1_L004 unaligned CPTAC3 cdf168a3-2eb6-4368-bf54-f23950626b10 b747d1bfc7eae3c1a2398a28dd15b788 { 'aliquot_tag': 'ALQ_6d3d9369', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.R2_L004.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R2_001.fastq.gz 4425085797 FASTQ R2_L004 unaligned CPTAC3 aec464aa-f28d-407d-a76f-869a3121d472 d079a6542e3381afde42c39e4e43dacf { 'aliquot_tag': 'ALQ_6d3d9369', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.genomic.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.genomic.gdc_realn.bam 8913744384 BAM genomic harmonized CPTAC3 7eb17d7f-4774-4f4d-ab20-29f6b93aff6e 2022f1892b6a1686639155ba3034bb4c { 'aliquot_tag': 'ALQ_6d3d9369', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.R1_L004.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R1_001.fastq.gz 4306549496 FASTQ R1_L004 unaligned CPTAC3 cdf168a3-2eb6-4368-bf54-f23950626b10 b747d1bfc7eae3c1a2398a28dd15b788 { 'aliquot_tag': 'ALQ_6d3d9369', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.R2_L004.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R2_001.fastq.gz 4425085797 FASTQ R2_L004 unaligned CPTAC3 aec464aa-f28d-407d-a76f-869a3121d472 d079a6542e3381afde42c39e4e43dacf { 'aliquot_tag': 'ALQ_6d3d9369', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.transcriptome.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 dd262648-2f73-4b4f-aac5-5a2c5f2c6dc5.rna_seq.transcriptome.gdc_realn.bam 18132165211 BAM transcriptome harmonized CPTAC3 12e50a13-341d-4b55-8407-9e6b3531c2af 9c12b6a62f1785b8647671617a17e8e0 { 'aliquot_tag': 'ALQ_6d3d9369', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-Y8DK-0011-R10A-SM-HAKY1.miRNA-Seq.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM miRNA-Seq tissue_normal CPT0286630000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTGAAA_S4_L004_R1_001.unaln.bam 352802300 BAM unaligned CPTAC3 14842e9b-1fa3-423c-9e35-8a3ab1163b20 c72b90870ab495f5969953ea1103d188 { 'aliquot_tag': 'ALQ_17fdc009', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-Y8DK-0011-R10A-SM-HAKY1.miRNA-Seq.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM miRNA-Seq tissue_normal CPT0286630000 5be949d3-314a-4699-8cfc-c62cbbc00736_mirnaseq_gdc_realn.bam 421417241 BAM harmonized CPTAC3 fcbf1822-3a29-4f5f-b6f0-0bcb37d8b165 82ec6745b18d8b671eb1f25d5a08c81c { 'aliquot_tag': 'ALQ_17fdc009', 'gdc_sample_type': 'Solid Tissue Normal' } GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.chimeric.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.chimeric.gdc_realn.bam 92430606 BAM chimeric harmonized CPTAC3 1f26118d-f64a-42dd-b9c1-df63307eb0ef 9357f486ac5631b62a87f88ad7a65f97 { 'aliquot_tag': 'ALQ_17fdc009', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.genomic.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.genomic.gdc_realn.bam 10268900215 BAM genomic harmonized CPTAC3 3839513b-357c-47cd-81bb-4bb40aaf397e e49d4383ac60be77bce84d837e5c7f23 { 'aliquot_tag': 'ALQ_17fdc009', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.R1_L004.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R1_001.fastq.gz 4854888143 FASTQ R1_L004 unaligned CPTAC3 682b4036-c822-40d0-9662-2c18077f8493 eb02f8ffcd30f1698dfff8249c6f1e4e { 'aliquot_tag': 'ALQ_17fdc009', 'gdc_sample_type': 'Solid Tissue Normal' } -GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.R2_L004.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R2_001.fastq.gz 5090597822 FASTQ R2_L004 unaligned CPTAC3 43e9394a-420b-4a99-907a-2f0a293a9f1c 18d6aeee1c0f9ee6f99474eb9695c62b { 'aliquot_tag': 'ALQ_17fdc009', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.genomic.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.genomic.gdc_realn.bam 10268900215 BAM genomic harmonized CPTAC3 245574d1-0a50-4757-918d-e7bb7975c8db e49d4383ac60be77bce84d837e5c7f23 { 'aliquot_tag': 'ALQ_17fdc009', 'gdc_sample_type': 'Solid Tissue Normal' } +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.R1_L004.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R1_001.fastq.gz 4854888143 FASTQ R1_L004 unaligned CPTAC3 682b4036-c822-40d0-9662-2c18077f8493 eb02f8ffcd30f1698dfff8249c6f1e4e { 'aliquot_tag': 'ALQ_17fdc009', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L004' } +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.R2_L004.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R2_001.fastq.gz 5090597822 FASTQ R2_L004 unaligned CPTAC3 43e9394a-420b-4a99-907a-2f0a293a9f1c 18d6aeee1c0f9ee6f99474eb9695c62b { 'aliquot_tag': 'ALQ_17fdc009', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L004' } GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.transcriptome.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 382d5298-8c0d-40bf-9391-b962f037c04a.rna_seq.transcriptome.gdc_realn.bam 19120343598 BAM transcriptome harmonized CPTAC3 8f6a015f-cec5-44a4-b75d-647c3776794f 993d91df8b613f317a1bd48eeaaa5c40 { 'aliquot_tag': 'ALQ_17fdc009', 'gdc_sample_type': 'Solid Tissue Normal' } -PT-Q2AG.RNA-Seq.chimeric.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 71d17708-12a4-41ef-8258-a65c5cb01c57.rna_seq.chimeric.gdc_realn.bam 520151066 BAM chimeric harmonized CPTAC3 bafd4b94-94e6-4e1f-8b6e-05330da3362c 9a13707828ab03751b781c2946e9f019 { 'aliquot_tag': 'ALQ_879c0898', 'gdc_sample_type': 'Solid Tissue Normal' } -PT-Q2AG.RNA-Seq.genomic.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 71d17708-12a4-41ef-8258-a65c5cb01c57.rna_seq.genomic.gdc_realn.bam 13360810828 BAM genomic harmonized CPTAC3 4393dcd0-75c6-42e6-8db6-3d8321d724bd c41c144ea11705e4e393473a5a9f3003 { 'aliquot_tag': 'ALQ_879c0898', 'gdc_sample_type': 'Solid Tissue Normal' } -PT-Q2AG.RNA-Seq.R1_L003.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R1_001.fastq.gz 5898206072 FASTQ R1_L003 unaligned CPTAC3 624298d8-62b5-48e2-8dbb-114aa81b99b3 daa12bbc628c67bbe970376515961d18 { 'aliquot_tag': 'ALQ_879c0898', 'gdc_sample_type': 'Solid Tissue Normal' } -PT-Q2AG.RNA-Seq.R2_L003.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R2_001.fastq.gz 6587430382 FASTQ R2_L003 unaligned CPTAC3 0fce5ae6-0a02-4802-8167-dd6405540e55 ad0d73b84334fddc373c6386f45998d8 { 'aliquot_tag': 'ALQ_879c0898', 'gdc_sample_type': 'Solid Tissue Normal' } -PT-Q2AG.RNA-Seq.transcriptome.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 71d17708-12a4-41ef-8258-a65c5cb01c57.rna_seq.transcriptome.gdc_realn.bam 21046952385 BAM transcriptome harmonized CPTAC3 a3231b5e-b6ed-464b-bff1-4d370cb8cc9e 8e3a0ad7a991e352c1d9a98d27303c9b { 'aliquot_tag': 'ALQ_879c0898', 'gdc_sample_type': 'Solid Tissue Normal' } +PT-Q2AG.RNA-Seq.chimeric.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 5a345e23-495c-4556-a169-426655ad39df.rna_seq.chimeric.gdc_realn.bam 520499169 BAM chimeric harmonized CPTAC3 1aeffca0-c5c1-4fdf-8fd9-6e1fd5e27c80 0403e2a1e7493091610853067e8ffd0e { 'aliquot_tag': 'ALQ_879c0898', 'gdc_sample_type': 'Solid Tissue Normal' } +PT-Q2AG.RNA-Seq.genomic.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 5a345e23-495c-4556-a169-426655ad39df.rna_seq.genomic.gdc_realn.bam 13387407531 BAM genomic harmonized CPTAC3 bee133f1-204b-43e5-a0a4-cc48750a983a f4fdaaf7cb394d13133753db100982c5 { 'aliquot_tag': 'ALQ_879c0898', 'gdc_sample_type': 'Solid Tissue Normal' } +PT-Q2AG.RNA-Seq.R1_L003.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R1_001.fastq.gz 5898206072 FASTQ R1_L003 unaligned CPTAC3 624298d8-62b5-48e2-8dbb-114aa81b99b3 daa12bbc628c67bbe970376515961d18 { 'aliquot_tag': 'ALQ_879c0898', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R1', 'lane': 'L003' } +PT-Q2AG.RNA-Seq.R2_L003.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R2_001.fastq.gz 6587430382 FASTQ R2_L003 unaligned CPTAC3 0fce5ae6-0a02-4802-8167-dd6405540e55 ad0d73b84334fddc373c6386f45998d8 { 'aliquot_tag': 'ALQ_879c0898', 'gdc_sample_type': 'Solid Tissue Normal', 'read': 'R2', 'lane': 'L003' } +PT-Q2AG.RNA-Seq.transcriptome.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 5a345e23-495c-4556-a169-426655ad39df.rna_seq.transcriptome.gdc_realn.bam 24323053743 BAM transcriptome harmonized CPTAC3 53b425a2-f98f-4a42-89bb-a9d1aa8d96c6 4e4bb8671642eaee0296da2766eaa009 { 'aliquot_tag': 'ALQ_879c0898', 'gdc_sample_type': 'Solid Tissue Normal' }